cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.79cnp5j4h
title: Data from: Carrier density crossover and quasiparticle mass enhancement in a doped 5d Mott insulator

description: High-temperature superconductivity in cuprates emerges upon doping the
 parent Mott insulator. Key features of the low-doped cuprate
 superconductors include an effective carrier density that tracks the
 number of doped holes, the emergence of an anisotropic pseudogap that is
 characterized by disconnected Fermi arcs, and the closure of the gap at a
 critical doping level. In Sr2IrO4, a spin–orbit-coupled Mott insulator
 often regarded as a 5d analog of the cuprates, surface probes have also
 revealed the emergence of an anisotropic pseudogap and Fermi arcs under
 electron doping. However, neither the corresponding critical doping nor
 the bulk signatures of pseudogap closure have yet been observed. Here we
 demonstrate that electron-doped Sr2IrO4 exhibits a critical doping level
 with a marked crossover in the effective carrier density at low
 temperatures. This is accompanied by a five-orders-of-magnitude increase
 in conductivity and a sixfold enhancement in the electronic-specific heat.
 These collective findings resemble the bulk pseudogap phenomenology in
 cuprates. However, given that electron-doped Sr2IrO4 is
 non-superconducting, it suggests that the pseudogap may not be a state of
 precursor pairing. Therefore, our results narrow the search for the key
 ingredient underpinning the formation of the superconducting condensate in
 doped Mott insulators.
description: # Source figure data for research article "Carrier density crossover
 and quasiparticle mass enhancement in a doped 5d Mott insulator" This
 dataset contains four Excel files with the raw data used to create the
 main figures in the manuscript. Variables accompanied by units are
 contained within the Excel worksheets. The contents of each data file are
 explained below. HSU_SourceDataFig1: Hall resistivity (rho_yx) as a
 function of the magnetic field at a constant temperature as specified. The
 first three tabs contained data for three doping levels: x = 0, x = 0.122,
 and x = 0.196. The fourth tab summarises the calculated Hall coefficient
 as a function of temperature at a constant magnetic field (8 T) for all
 the doping levels studied. HSU_SourceDataFig2: First tab: resistivity
 (rhoxx) as a function of temperature (T) for specified doping level (x).
 Second tab: Hall mobility (mu_H) versus T for specified doping level (x).
 Third tab: conductivity (sigma) extrapolated to 2 K versus doping level
 (x). All numbers quoted are in SI units. HSU_SourceDataFig3: Specific heat
 (C/T) as a function of T-squared (T^2) for the doping level specified.
 HSU_SourceDataFig4: Effective Hall carrier density per unit cell (nH*Vuc)
 and zero-temperature intercept of Specific heat (C/T) versus doping level
 (x). Corresponding errors are specified with a preceding "d".
DOI: 10.5061/dryad.cvdncjtc0
title: Data from: Range size variably predicts genetic diversity in Gehyra geckos

description: Genetic diversity is a fundamental population genetic parameter, and
 predicts adaptive capacity. Neutral theory predicts a positive correlation
 between population (or range) size and genetic diversity, but this can be
 confounded by other demographic processes. To investigate the role of
 range size, population fluctuation and introgression in determining
 genetic diversity, we generate and analyse population-level, genomic-scale
 SNP data from 21 species of Australian Gehyra geckos (769 samples) that
 vary in range size over three orders of magnitude. Using a best-practice
 approach to estimate SNP-based heterozygosity, we found a significantly
 positive overall correlation between range size and heterozygosity,
 although with a shallow slope (R2 = 0.30), consistent with Lewontin’s
 Paradox. At a clade level, we show a stronger relationship between range
 size and heterozygosity in the australis group (R2 = 0.74, p &lt;
 0.01) than the nana group (R2 = 0.15, n.s.). A significantly negative
 correlation between Tajima’s D and range size in both groups, and evidence
 for introgression in the nana group, suggest a role for both population
 fluctuation and introgression in driving deviations from theoretical
 expectations. Our results provide insight into the biological and
 demographic processes that influence genetic diversity, in addition to
 neutral expectations.
description: # Data from: Range size variably predicts genetic diversity in *Gehyra*
 geckos
 [https://doi.org/10.5061/dryad.cvdncjtc0](https://doi.org/10.5061/dryad.cvdncjtc0) Raw data and processed final .vcf files underlying the analysis for Lau et al. 'Range size variably predicts genetic diversity in *Gehyra* geckos'. Metadata and geographical information for each sample ID are provided in Supplementary Table 1 of the manuscript. ## Description of the data and file structure **Population genomic data** *DArT_raw_data.zip* - contains raw DArT reads for each sample, named as according to IDs provided in Supplementary Table 1 *expanded_aus_gvcf.zip* - contains single-sample, expanded gvcf files for each sample in the *Gehyra australis* group, as used for individual heterozygosity calculations *expanded_nana_gvcf.zip* - contains single-sample, expanded gvcf files for each sample in the *Gehyra nana* group, as used for individual heterozygosity calculations *cohort_vcf.zip* - contains cohort-genotyped files (by species, clades and sympatric groups), underlying Tajima's D and introgression analyses **Species tree data** *starbeast_tree_alignments_100loci.zip* - contains 100 gene tree alignments of two haplotypes from 62 species or lineages, underlying the Starbeast2 species tree reconstruction *Gehyra_62species_Starbeast2_100loci_renamed2024.tre* - is the final 62-species Starbeast2 species tree underlying phylogenetic comparative analysis
DOI: 10.82294/dvnqkmt3w
title: Citas testimoniales: Gráficos Sankye. Territorio: Todos. Sector: Todos. Año: 2023

description: De acuerdo con las tendencias identificadas en cómo se configuran y adquieren sentido las tendencias discursivas de los educadores artísticos, estos gráficos presentan la consolidación de las acciones observadas mediante el protocolo de ejes medulares durante el año 2023 en los territorios atendidos. Asimismo, se incluye una sumatoria general que integra todas las entrevistas realizadas.
A diferencia de los años posteriores, se presentan todos los gráficos Sankey asociados a la estrategia de triangulación y unidad de análisis: 1) Desarrollo de herramientas curriculares y didácticas; 2) Identififación de currículos existentes; 3) Investigación en comunidad; 4) Maestros con aulas transformadas y transformadoras; 5) Procesos interdisciplinares de integración curricular.
DOI: 10.5061/dryad.p5hqbzkxp
title: Scavengers in the human-dominated landscape dataset

description: Rapid urbanization is a major cause of habitat and biodiversity loss and
 human-animal conflict. While urbanization is inevitable, we need to
 develop a good understanding of the urban ecosystem and the urban-adapted
 species, in order to ensure sustainable cities for our future. Scavengers
 play a major role in urban ecosystems, and often, urban adaptation
 involves a shift towards scavenging behaviour in wild animals. We carried
 out an experimented at different sites in the state of West Bengal, India,
 to identify the scavenging guild within urban habitats, in response to
 human-provided food. Our study found a total of 17 different vertebrate
 species across 15 sites, over 498 sessions of observations. We carried out
 network analysis to understand the dynamics of the system, and found that
 the free-ranging dog and common myna were key species within the
 scavenging networks. This study revealed the complexity of scavenging
 networks within human-dominated habitats.
description: The data was collected through video recordings and
 observations. 
description: ### Title: Scavengers in the human-dominated landscape dataset |
 **Variable** | **Definition** | | :-------------------- |
 :-------------------------------------------------------------------------------- | | Day\_order | The day of the experiment from day 1 | | Date | Date on which the experiment was performed (DD/MM/YY) | | Session | Morning/afternoon | | Habitat | Urban/ rural/ sub-urban | | Habitat\_food | The combination of habitat of the experiment and the type of food provided | | Place | Identity of the site | | Food | veg or non-veg | | Scv | scavenging species | | Scv\_code | code given to the species | | Latency | time taken for the species to respond, from the start of the experiment (seconds) | | Order | The order of arrival of the species to the site | | Sniff | sniffing of the food if observed (yes/no) | | Eat | Eating of the food (yes/no) | | Column N to column AE | counts of individuals of a species observed | | Temp | Local temperature during the time of the experiment (deg Celsius) | | Wind | wind speed (km/h) | | Rain | in mm | | Cloud | cloud cover in percentage, converted to proportion | | Ses\_div | session diversity | | Ses\_divn | normalised session diversity |
DOI: 10.82294/dvntlubtt
title: COPUS Visualización Gráfico de barras. Territorio: Todos. Sector: Educación y Cultura. Año: 2023

description: De acuerdo con las tendencias identificadas en las interacciones entre educadores y estudiantes, estos gráficos presentan la consolidación de las acciones observadas mediante el protocolo COPUS durante el año 2023 en los territorios atendidos. Asimismo, se incluye una sumatoria general que integra todas las observaciones realizadas.
DOI: 10.15468/dl.2x2dgq
title: Occurrence Download

description: A dataset containing 1141 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oarisma poweshiek"
 ]
}

 The dataset includes 1141 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004064-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.k6djh9wg4
title: Data from: Genome-wide association study for traits related to cold tolerance and recovery during seedling stage in rice

description: Rice (Oryza sativa L.), due to its tropical and sub-tropical origin, is
 adversely affected by low temperatures below 15°C, restricting growth and
 yield. During the seedling and vegetative stage, cold stress causes curled
 leaves, fewer tillers, retarded growth, chlorosis, and necrosis. Due to
 the significance of this trait, exploring the wealth of genetic resources
 from a wider pool of germplasm to identify new sources of tolerance will
 be a crucial step. Toward this goal, we performed a genome-wide
 association study on a novel diversity panel of 238 rice accessions using
 the C7AIR SNP array. The experiment was conducted in controlled growth
 conditions, and rice accessions were evaluated for seven traits and four
 indices, which were recorded at three different time points, i.e., prior
 to cold treatment, after cold treatment and post-recovery phase. A total
 of 77 significant GWAS-QTLs were identified for 21 cold tolerance and
 related traits of interest. Out of these, 34 were detected after cold
 stress, and 43 were detected during the post-recovery phase. A total of 42
 QTL regions were significant at FDR&lt;0.001 and -log10(P-values)
 &gt; 5. In addition, 31 novel GWAS-QTLs, three colocalized GWAS-QTL
 hotspots, and eight colocalized GWAS-QTLs for two traits sharing the same
 genomic location were also identified. The results of this study may help
 in further elucidating the molecular mechanisms underlying cold tolerance
 as well as aid in developing climate-smart rice varieties for chilling
 stress conditions.
description: # Data from: Genome-wide association study for traits related to cold
 tolerance and recovery during seedling stage in rice
 [https://doi.org/10.5061/dryad.k6djh9wg4](https://doi.org/10.5061/dryad.k6djh9wg4) SNP matrix file of genotypic data for GWAS for rice cold tolerance (SNP markers are rows, rice accessions are columns). Gentoype data obtained from the Cornell_7K_Array_Infinium_Rice Array (C7AIR; Morales et al., 2020) comprising 7,098 SNPs was used.  ## Description of the data and file structure To access the genotypic data for the 238 rice accessions, the Cornell_7K_Array_Infinium_Rice Array (C7AIR; Morales et al., 2020) comprising 7,098 SNPs was used. After filtering for the minor allele frequency (MAF) criterion of 5% and SNP call rate of ≥90%, only a total of 4,902 SNPs were used for GWAS analysis (Supplemental Table S3). ## Sharing/Access information Data was derived from the following sources: * [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7224494/](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7224494/) Contact Endang Septiningsih ([eseptiningsih@tamu.edu](mailto:eseptiningsih@tamu.edu)) with any questions. This manuscript has been published: Rastogi, K., Mankar, S. P., & Septiningsih, E. M. (2025). Genome‐wide association study for traits related to cold tolerance and recovery during seedling stage in rice. *Crop Science*, *65*(1), e70003. [https://doi.org/10.1002/csc2.70003](https://doi.org/10.1002/csc2.70003)
DOI: 10.5061/dryad.hx3ffbgp1
title: RNAseq data relating to manuscript: Prior Fc Receptor activation primes macrophages for increased sensitivity to IgG via long term and short term mechanisms.

description: Macrophages measure the ‘eat-me’ signal IgG to identify targets for
 phagocytosis. We tested if prior encounters with IgG influence mouse
 bone-marrow-derived macrophage appetite. IgG is recognized by the Fc
 Receptor. To temporally control Fc Receptor activation, we engineered an
 Fc Receptor that is activated by light-induced oligomerization of Cry2,
 triggering phagocytosis. Using this tool, we demonstrate that subthreshold
 Fc Receptor activation primes macrophages to be more sensitive to IgG in
 future encounters. Macrophages that have previously experienced
 subthreshold Fc Receptor activation eat more IgG-bound cancer cells.
 Increased phagocytosis occurs by two discrete mechanisms – a short- and
 long-term priming. Long-term priming requires new protein synthesis and
 Erk activity. These long-term transcriptional changes show an increase in
 immune response genes and a reprogramming of macrophages towards an M2
 polarization. Short-term priming does not require new protein synthesis
 and correlates with an increase in Fc Receptor mobility. Our work
 demonstrates that IgG primes macrophages for increased phagocytosis,
 suggesting that therapeutic antibodies may become more effective after
 initial priming doses. This dataset relates to the included RNAseq data in
 the Developmental Cell manuscript entitled: Prior Fc Receptor activation
 primes macrophages for increased sensitivity to IgG via long term and
 short term mechanisms.
description: # RNAseq data Data are RNAseq FASTQ files relating to figures 5a,b; S4a,b
 in the manuscript entitled Prior Fc Rceptor activation primes macrophages
 for increased sensitivity to IgG via long term and short term mechanisms.
 Data were analyzed using code initially described in Atkins el al 2024
 doi: [10.1021/acsbiomaterials.3c01079](https://doi.org/10.1021/acsbiomaterials.3c01079 "DOI URL") ## Description of the data and file structure Each sample has 2 individual .fq files per replicate. Sample names are included below. AB_1_1 & AB_2_1 = stimulated optoFcR (in fig 5a, S4a) AB_1_3 & AB_2_3 = stimulated control (in fig 5a, S4a) AB_1_9 & AB_2_9 = M1 polarized (in fig 5b, S4b) AB_1_10 & AB_2_10 = M2 polarized (in fig 5b, S4b) AB_1_11 & AB_2_11 = stimulated optoFcR (in fig 5b, S4b) AB_2_5 = unstimulated optoFcR (in fig 5a, S4a, S4b) AB_2_7 = unstimulated control (in fig 5a, S4a, S4b)
DOI: 10.82294/dvnrs3nto
title: Datos consolidados de COPUS. Territorio: Cundinamarca, Cali, Guainía, Norte de Santander, Caquetá, Amazonas, Barrancabermeja, Todos. Sector: Cultura, Educación, Total. Año: 2024

description: En este apartado se presentan los datos consolidados a partir de las observaciones semiestructuradas realizadas en 2024, esta vez analizadas bajo los criterios del protocolo de observación estructurada COPUS. Este dataset contiene la sumatoria de todas las observaciones COPUS por territorio y una sumatoria de todos los territorios.
DOI: 10.15468/dl.u682dq
title: Occurrence Download

description: A dataset containing 3080 records in GBIF matching the query:
SELECT
 '492' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 46.479780028101516
 AND decimalLatitude &lt;= 51.21395264452012
 AND decimalLongitude &gt;= 125.88796183592417
 AND decimalLongitude &lt;= 140.31019834420974
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 3080 records were derived from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004047-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.c2fqz61jc
title: Plant trait matrix for fire-prone Mediterranean chronosequences

description: A database of 23 traits for 117 Mediterranean plant species. It includes
 three groups of traits: i) four whole-plant traits (bud height,
 sclerophylly, xerophily and resprouting ability), ii) ten above-ground
 traits (plant height, flowering time and span, leaf size, area, weight,
 thickness, specific leaf area, seed size and dispersal distance), and iii)
 nine below-ground traits (root length, depth, laterality, root
 depth:laterality ratio, root weight, specific root length, root C and N
 concentration and the root CN ratio).
description: # Plant trait matrix for fire-prone Mediterranean chronosequences
 [https://doi.org/10.5061/dryad.c2fqz61jc](https://doi.org/10.5061/dryad.c2fqz61jc) A database of 23 traits for the 117 species found in three fire chronosequences in Mediterranean ecosystems. ## Description of the data and file structure We included three groups of traits: i) four whole-plant traits (bud height, sclerophylly, xerophily and resprouting ability), ii) ten above-ground traits (plant height, flowering time and span, leaf size, area, weight, thickness, specific leaf area, seed size and dispersal distance), and iii) nine below-ground traits (root length, depth, laterality, root depth:laterality ratio, root weight, specific root length, root C and N concentration and the root CN ratio).
DOI: 10.82294/dvnspjaac
title: Datos consolidados de COPUS. Territorio: Cundinamarca, Cali, Norte de Santander, Todos. Sector: Cultura, Educación, Total. Año: 2023

description: En este apartado se presentan los datos consolidados a partir de las observaciones semiestructuradas realizadas en 2023, esta vez analizadas bajo los criterios del protocolo de observación estructurada COPUS. Este dataset contiene la sumatoria de todas las observaciones COPUS por territorio y una sumatoria de todos los territorios.
DOI: 10.5517/ccdc.csd.cc2g6l6h
title: CCDC 2270446: Experimental Crystal Structure Determination

description: Related Article: Jan Romano-deGea, Irina Sinenko, Peter M. F. Pânzar, Adriana Neves Vieira, Lindsey E. K. Frederiksen, Kseniya Glinkina, Farzaneh Fadaei Tirani, Rosario Scopelliti, Fabien Kuttler, Kelvin Lau, Paul Dyson|2026|Chemical Science|||doi:10.1039/D5SC05555E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g6l7j
title: CCDC 2270447: Experimental Crystal Structure Determination

description: Related Article: Jan Romano-deGea, Irina Sinenko, Peter M. F. Pânzar, Adriana Neves Vieira, Lindsey E. K. Frederiksen, Kseniya Glinkina, Farzaneh Fadaei Tirani, Rosario Scopelliti, Fabien Kuttler, Kelvin Lau, Paul Dyson|2026|Chemical Science|||doi:10.1039/D5SC05555E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g6l8k
title: CCDC 2270448: Experimental Crystal Structure Determination

description: Related Article: Jan Romano-deGea, Irina Sinenko, Peter M. F. Pânzar, Adriana Neves Vieira, Lindsey E. K. Frederiksen, Kseniya Glinkina, Farzaneh Fadaei Tirani, Rosario Scopelliti, Fabien Kuttler, Kelvin Lau, Paul Dyson|2026|Chemical Science|||doi:10.1039/D5SC05555E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g6l9l
title: CCDC 2270449: Experimental Crystal Structure Determination

description: Related Article: Jan Romano-deGea, Irina Sinenko, Peter M. F. Pânzar, Adriana Neves Vieira, Lindsey E. K. Frederiksen, Kseniya Glinkina, Farzaneh Fadaei Tirani, Rosario Scopelliti, Fabien Kuttler, Kelvin Lau, Paul Dyson|2026|Chemical Science|||doi:10.1039/D5SC05555E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g6lbm
title: CCDC 2270450: Experimental Crystal Structure Determination

description: Related Article: Jan Romano-deGea, Irina Sinenko, Peter M. F. Pânzar, Adriana Neves Vieira, Lindsey E. K. Frederiksen, Kseniya Glinkina, Farzaneh Fadaei Tirani, Rosario Scopelliti, Fabien Kuttler, Kelvin Lau, Paul Dyson|2026|Chemical Science|||doi:10.1039/D5SC05555E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gg7sz
title: CCDC 2277811: Experimental Crystal Structure Determination

description: Related Article: A. M. Khabibrakhmanova, R. G. Faizova, D. P. Gerasimova, E. Y. Trizna, O. A. Lodochnikova, A. R. Kayumov, L. Z. Latypova, A. R. Kurbangalieva|2024|Uch. Zap. Kazan. Univ., Ser. Estestv. Nauki|166|563|doi:10.26907/2542-064X.2024.4.563-589
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.