cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3854996
title: Data Sets for Measuring and Modeling the Performance Configurations of Distributed DBMS

description: These data sets contain the performance measurements and additional metadata as accompanying material for the research paper <strong>Baloo: Measuring and Modeling the Performance Configurations of Distributed DBMS</strong><em> </em>that is published in the <em>Symposium on Modelling, Analysis, and Simulation of Computer and Telecommunication Systems (MASCOTS) 2020.</em> The attached readme describes the data set structure.
description: The research leading to these results has received funding from the Federal Ministry of Education and Research of Germany under grant agreement 01IS18068 (SORRIR).
DOI: 10.5281/zenodo.3854995
title: Data Sets for Measuring and Modeling the Performance Configurations of Distributed DBMS

description: These data sets contain the performance measurements and additional metadata as accompanying material for the research paper <strong>Baloo: Measuring and Modeling the Performance Configurations of Distributed DBMS</strong><em> </em>that is published in the <em>Symposium on Modelling, Analysis, and Simulation of Computer and Telecommunication Systems (MASCOTS) 2020.</em> The attached readme describes the data set structure.
description: The research leading to these results has received funding from the Federal Ministry of Education and Research of Germany under grant agreement 01IS18068 (SORRIR).
DOI: 10.5281/zenodo.3588415
title: Human Methylene- tetrahydrofolate reductase (MTHFR) A Target Enabling Package (TEP)

description: The folate and methionine cycles are essential metabolic pathways for life, involved respectively in DNA synthesis and generation of the ubiquitous methyl donor S-adenosylmethionine (SAM). The enzyme 5,10-methylenetetrahydrofolate reductase (MTHFR) represents a key regulatory connection between these cycles, hence exerting a strong influence on an array of diseases. This TEP presents the first structures for any eukaryotic MTHFR, revealing a novel SAM-binding fold. The TEP provides additional mass spectrometry, activity assay and biophysical binding methods yielding mechanistic insights into how phosphorylation and allosteric binding of SAM act in concert to inhibit MTHFR activity. This work further provides the starting point for the design of tool molecules (e.g. SAM-analogues) aimed at disrupting the SAM-induced inhibition of MTHFR activity.
DOI: 10.5281/zenodo.3584528
title: Human Methylene- tetrahydrofolate reductase (MTHFR) A Target Enabling Package (TEP)

description: The folate and methionine cycles are essential metabolic pathways for life, involved respectively in DNA synthesis and generation of the ubiquitous methyl donor S-adenosylmethionine (SAM). The enzyme 5,10-methylenetetrahydrofolate reductase (MTHFR) represents a key regulatory connection between these cycles, hence exerting a strong influence on an array of diseases. This TEP presents the first structures for any eukaryotic MTHFR, revealing a novel SAM-binding fold. The TEP provides additional mass spectrometry, activity assay and biophysical binding methods yielding mechanistic insights into how phosphorylation and allosteric binding of SAM act in concert to inhibit MTHFR activity. This work further provides the starting point for the design of tool molecules (e.g. SAM-analogues) aimed at disrupting the SAM-induced inhibition of MTHFR activity.
DOI: 10.6084/m9.figshare.13160264
title: Not for preview.xlsx

description: Not for preview
DOI: 10.6084/m9.figshare.13160264.v3
title: Not for preview.xlsx

description: Not for preview
DOI: 10.5517/ccdc.csd.cc25mwb1
title: CCDC 2015103: Experimental Crystal Structure Determination

description: Related Article: Jacob R. Prat, Carlo A. Gaggioli, Ryan C. Cammarota, Eckhard Bill, Laura Gagliardi, Connie C. Lu|2020|Inorg.Chem.|59|14251|doi:10.1021/acs.inorgchem.0c02041
DOI: 10.6084/m9.figshare.13160264.v2
title: Tencent cultural policy entrepreneur_Dataset.xlsx

description: The chronological events timeline of Tencent Neo-Culture Creativity and relevant cultural policy changes in China between 2011 and 2019
DOI: 10.5517/ccdc.csd.cc25mwc2
title: CCDC 2015104: Experimental Crystal Structure Determination

description: Related Article: Jacob R. Prat, Carlo A. Gaggioli, Ryan C. Cammarota, Eckhard Bill, Laura Gagliardi, Connie C. Lu|2020|Inorg.Chem.|59|14251|doi:10.1021/acs.inorgchem.0c02041
DOI: 10.5517/ccdc.csd.cc25mwd3
title: CCDC 2015105: Experimental Crystal Structure Determination

description: Related Article: Jacob R. Prat, Carlo A. Gaggioli, Ryan C. Cammarota, Eckhard Bill, Laura Gagliardi, Connie C. Lu|2020|Inorg.Chem.|59|14251|doi:10.1021/acs.inorgchem.0c02041
DOI: 10.5517/ccdc.csd.cc25mwf4
title: CCDC 2015106: Experimental Crystal Structure Determination

description: Related Article: Jacob R. Prat, Carlo A. Gaggioli, Ryan C. Cammarota, Eckhard Bill, Laura Gagliardi, Connie C. Lu|2020|Inorg.Chem.|59|14251|doi:10.1021/acs.inorgchem.0c02041
DOI: 10.5517/ccdc.csd.cc25n9ms
title: CCDC 2015515: Experimental Crystal Structure Determination

description: Related Article: Jacob R. Prat, Carlo A. Gaggioli, Ryan C. Cammarota, Eckhard Bill, Laura Gagliardi, Connie C. Lu|2020|Inorg.Chem.|59|14251|doi:10.1021/acs.inorgchem.0c02041
DOI: 10.5517/ccdc.csd.cc25nclt
title: CCDC 2015576: Experimental Crystal Structure Determination

description: Related Article: Christian D. Buch, Dmitri Mitcov, Stergios Piligkos|2020|Dalton Trans.|49|13557|doi:10.1039/D0DT02448A
DOI: 10.5517/ccdc.csd.cc25s6nv
title: CCDC 2019267: Experimental Crystal Structure Determination

description: Related Article: Benjamin L. L. Réant, Victoria E. J. Berryman, John A. Seed, Annabel R. Basford, Alasdair Formanuik, Ashley J. Wooles, Nikolas Kaltsoyannis, Stephen T. Liddle, David P. Mills|2020|Chem.Commun.|56|12620|doi:10.1039/D0CC06044E
DOI: 10.5517/ccdc.csd.cc25s6pw
title: CCDC 2019268: Experimental Crystal Structure Determination

description: Related Article: Benjamin L. L. Réant, Victoria E. J. Berryman, John A. Seed, Annabel R. Basford, Alasdair Formanuik, Ashley J. Wooles, Nikolas Kaltsoyannis, Stephen T. Liddle, David P. Mills|2020|Chem.Commun.|56|12620|doi:10.1039/D0CC06044E
DOI: 10.5517/ccdc.csd.cc25s6qx
title: CCDC 2019269: Experimental Crystal Structure Determination

description: Related Article: Benjamin L. L. Réant, Victoria E. J. Berryman, John A. Seed, Annabel R. Basford, Alasdair Formanuik, Ashley J. Wooles, Nikolas Kaltsoyannis, Stephen T. Liddle, David P. Mills|2020|Chem.Commun.|56|12620|doi:10.1039/D0CC06044E
DOI: 10.5517/ccdc.csd.cc23pzrk
title: CCDC 1957549: Experimental Crystal Structure Determination

description: Related Article: Di Qu, Xiaoting Liu, Fengxue Duan, Rong Xue, Bao Li, Lixin Wu|2020|Dalton Trans.|49|12950|doi:10.1039/D0DT02506B
DOI: 10.5517/ccdc.csd.cc23pzsl
title: CCDC 1957550: Experimental Crystal Structure Determination

description: Related Article: Di Qu, Xiaoting Liu, Fengxue Duan, Rong Xue, Bao Li, Lixin Wu|2020|Dalton Trans.|49|12950|doi:10.1039/D0DT02506B
DOI: 10.5517/ccdc.csd.cc23pztm
title: CCDC 1957551: Experimental Crystal Structure Determination

description: Related Article: Di Qu, Xiaoting Liu, Fengxue Duan, Rong Xue, Bao Li, Lixin Wu|2020|Dalton Trans.|49|12950|doi:10.1039/D0DT02506B
DOI: 10.5281/zenodo.4153803
title: Model inputs and results from FastScape landscape evolution model runs for southern Africa

description: These are the input files and results for the models presented in a paper "Constraining plateau uplift in southern Africa by combining thermochronology, sediment flux, topography, and landscape evolution modeling" submitted to JGR:Solid Earth in October 2020. The corresponding code needed to run the inputs can be found here: http://doi.org/10.5281/zenodo.4150333. The readme.txt file contained here explains the included data and results, as well as simple instructions for how to run the models.
DOI: 10.17179/excli2020-2940/supplementary_data
title: Interleukin-6 is associated with tryptophan metabolism and signs of depression in individuals with carbohydrate malabsorption

description: The aim of the present study was to investigate possible associations between interleukin-6 (IL-6), interferon-gamma (INF-γ), tumor necrosis factor-alpha (TNF-α), lactoferrin and lipopolysaccharide binding protein (LBP) with TRP metabolism and signs of depression in a large cohort of outpatients referred for carbohydrate malabsorption testing. Serum concentrations of IL-6, INF-γ, TNF-α, lactoferrin, LBP, tryptophan (TRP), kynurenine (KYN) and kynuric acid were determined in 250 adults referred for lactose and fructose malabsorption testing. All participants filled out the Beck Depression Inventory (BDI). Serum IL-6 levels were positively correlated with the BDI score (p = 0.001, ρ = 0.205) and indicators of TRP metabolism (KYN/TRP ratio, KYN) (P-values &lt; 0.05, ρ = 0.176 and 0.136). Ninety-five individuals with a BDI score &gt; 13 showed significantly higher IL-6 serum levels (1.7 [1.0 – 2.8] vs. 1.1 [0.8 – 1.7] pg/mL, p &lt; 0.001) compared to 115 individuals with a BDI score ≤ 13. LBP showed a positive correlation with the KYN/TRP ratio (p = 0.005, ρ = 0.177). IL-6 and LBP were associated with indicators of TRP metabolism. IL-6 was found to be linked to signs of depression. Individuals with the presence of depressive symptoms showed higher serum IL-6 levels compared to individuals without depressive symptoms.
description: EXCLI Journal; 19:Doc1414; ISSN 1611-2156
DOI: 10.6084/m9.figshare.12931754
title: Novel biological functions of the NsdC transcription factor in Aspergillus fumigatus

description: The fungal zinc finger transcription factor NsdC is named after, and is best known for, its essential role in sexual reproduction (never in sexual development). In previous studies with <i>Aspergillus nidulans </i>it was also shown to have roles in promotion of vegetative growth and suppression of asexual conidiation. In this study the function of the <i>nsdC </i>homologue in the opportunistic human pathogen <i>A. fumigatus</i> was investigated. NsdC was again found to be essential for sexual development, with deletion of the <i>nsdC </i>gene in both <i>MAT1-1 </i>and <i>MAT1-2 </i>mating partners of a cross leading to complete loss of fertility. However, a functional copy of <i>nsdC</i> in one mating partner was sufficient to allow sexual reproduction. Deletion of <i>nsdC </i>also led to decreased vegetative growth and allowed conidiation in liquid cultures, again consistent with previous findings. However, NsdC in <i>A. fumigatus </i>was shown to have additional biological functions including response to calcium stress, correct organization of cell wall structure and response to the cell wall stressors. Furthermore, virulence and host immune recognition was affected. Gene expression studies involving chromatin immunoprecipitation (ChIP) of RNA polymerase II (PolII) coupled to sequencing (Seq) revealed that deletion of <i>nsdC </i>resulted in changes in expression of over 620 genes under basal growth conditions. This demonstrated that this transcription factor mediates the activity of a wide variety of signalling and metabolic pathways and indicates that despite the naming of the gene, the promotion of sexual reproduction is just one among multiple roles of NsdC.
DOI: 10.6084/m9.figshare.12931754.v2
title: Novel biological functions for the Aspergillus fumigatus NsdC transcription factor homologue involved in sexual development

description: The fungal zinc finger transcription factor NsdC is named after, and is best known for, its essential role in sexual reproduction (never in sexual development). In previous studies with <i>Aspergillus nidulans </i>it was also shown to have roles in promotion of vegetative growth and suppression of asexual conidiation. In this study the function of the <i>nsdC </i>homologue in the opportunistic human pathogen <i>A. fumigatus</i> was investigated. NsdC was again found to be essential for sexual development, with deletion of the <i>nsdC </i>gene in both <i>MAT1-1 </i>and <i>MAT1-2 </i>mating partners of a cross leading to complete loss of fertility. However, a functional copy of <i>nsdC</i> in one mating partner was sufficient to allow sexual reproduction. Deletion of <i>nsdC </i>also led to decreased vegetative growth and allowed conidiation in liquid cultures, again consistent with previous findings. However, NsdC in <i>A. fumigatus </i>was shown to have additional biological functions including response to calcium stress, correct organization of cell wall structure and response to the cell wall stressors. Furthermore, virulence and host immune recognition was affected. Gene expression studies involving chromatin immunoprecipitation (ChIP) of RNA polymerase II (PolII) coupled to sequencing (Seq) revealed that deletion of <i>nsdC </i>resulted in changes in expression of over 620 genes under basal growth conditions. This demonstrated that this transcription factor mediates the activity of a wide variety of signalling and metabolic pathways and indicates that despite the naming of the gene, the promotion of sexual reproduction is just one among multiple roles of NsdC.
DOI: 10.5281/zenodo.4154108
title: Social media statistics_v2

description: These data were collected/ generated through the periodic monitoring of the project’s social media statistics (including Facebook, Twitter and LinkedIn) with a view to measuring and assessing the performance and results of the project’s social media activity in terms of dissemination and communication.
DOI: 10.5281/zenodo.4154107
title: Social media statistics_v2

description: These data were collected/ generated through the periodic monitoring of the project’s social media statistics (including Facebook, Twitter and LinkedIn) with a view to measuring and assessing the performance and results of the project’s social media activity in terms of dissemination and communication.
DOI: 10.21227/wsec-2q16
title: Baseline 13

description: Baseline12 + ignore zeros
DOI: 10.21227/nq4j-ag79
title: 3D-FLARE DB: Two subjects

description: "The friction ridge pattern is a 3D structure which, in its natural state, is not deformed by contact with a surface''. Building upon this rather trivial observation, the present work constitutes a first solid step towards a paradigm shift in fingerprint recognition from its very foundations. We explore and evaluate the feasibility to move from current technology operating on 2D images of elastically deformed impressions of the ridge pattern, to a new generation of systems based on full-3D models of the natural nondeformed ridge pattern itself. There are already a small number of previous studies that have already started scratching the surface of 3D fingerprint recognition and that should not go overlooked. However, the vast majority of these few successful approaches published so far, are based on the reconstruction of fingerprints from multiple 2D images acquired with different lighting conditions (photometric stereo 3D reconstruction) or acquired from different angles (stereo vision 3D reconstruction). Such reconstruction methods lead in general to 2D fingerprints wrapped over the overall volume of the finger. These volumetric fingerprints have shown some promising performance, but still miss the real depth information of the ridge pattern, which, in the best case scenario, is coarsely estimated during the error-prone reconstruction process. In the present work we take one step further, directly acquiring for the first time in a consistent and repeatable manner, full-3D fingerprint models stored as point-clouds, where each point is defined by its [x; y; z] coordinates. This way, the 3D data is directly measured by the sensor, with no post-processing reconstruction stage required. The complete recognition system developed represents as well an alternative to traditional technology based on minutiae detection. It shows that image-based processing algorithms and descriptors can be successfully applied to the new full-3D data, reaching very competitive results and confirming the high distinctiveness of the model.
DOI: 10.6084/m9.figshare.13160855
title: dataset.rar

description: Dataset covering the entire development history of four open-source systems from different domains, covering a total of 37500 commits from up to 20 years of development, which can serve as a source of information for new studies on the evolution of systems in space and time.
DOI: 10.6084/m9.figshare.13160855.v1
title: dataset.rar

description: Dataset covering the entire development history of four open-source systems from different domains, covering a total of 37500 commits from up to 20 years of development, which can serve as a source of information for new studies on the evolution of systems in space and time.
DOI: 10.6084/m9.figshare.13160348
title: Antibacterial activities of methanolic extract of some plant against the isolates BS1 and BS2

description: Antibacterial activities of <i>Allium sativum,</i><i> Hibiscus rosa sinensis,</i><i> Ocimum sanctum,</i> <i>Allium cepa,</i><i> </i><i>Zingiper montanum, </i><i>Psidium guajava </i>plants extract against the isolates BS1 and BS2, methanol was used as solvent, Bacteria was cultured in LB, plated were incubated at 37 <sup>o</sup>C for 16 hours
DOI: 10.6084/m9.figshare.13160348.v2
title: Antibacterial activities of methanolic extract of some plant against the isolates BS1 and BS2

description: Antibacterial activities of <i>Allium sativum,</i><i> Hibiscus rosa sinensis,</i><i> Ocimum sanctum,</i> <i>Allium cepa,</i><i> </i><i>Zingiper montanum, </i><i>Psidium guajava </i>plants extract against the isolates BS1 and BS2, methanol was used as solvent, Bacteria was cultured in LB, plated were incubated at 37 <sup>o</sup>C for 16 hours
DOI: 10.6084/m9.figshare.13160348.v1
title: Antibacterial activities of methanolic extract of some plant against the isolates BS1 and BS2

description: Antibacterial activities of <i>Allium sativum,</i><i> Hibiscus rosa sinensis,</i><i> Ocimum sanctum,</i> <i>Allium cepa,</i><i> </i><i>Zingiper montanum, </i><i>Psidium guajava </i>plants extract against the isolates BS1 and BS2, methanol was used as solvent, Bacteria was cultured in LB, plated were incubated at 37 <sup>o</sup>C for 16 hours
DOI: 10.5281/zenodo.4154395
title: A complete dietary review of Japanese birds with special focus on molluscs

description: We present a new database reviewing dietary information for all Japanese bird species. The information within this database was collected through intense literary review to provide a complete look at bird species historically present around the country.
DOI: 10.5281/zenodo.3988930
title: MontoloSHACLStats

description: This dataset contains a small corpus of SHACL shapes (raw-* directories)<br> which were downloaded using the NodeJS script get-content.js and the config files of the download-config directory from GitHub and web resources. Constraint use statistics (stats-* directories) were generated using montolo (https://w3id.org/montolo) and a ptyhon script (https://zenodo.org/record/3989145).<br> These statistics are described in RDF following the montolo vocabulary (https://zenodo.org/record/3343335).
DOI: 10.6084/m9.figshare.13161000.v1
title: Additional file 2 of Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts

description: Additional file 2. Transcript IDs by 9 DEG methods for case/control study.
DOI: 10.6084/m9.figshare.13161000
title: Additional file 2 of Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts

description: Additional file 2. Transcript IDs by 9 DEG methods for case/control study.
DOI: 10.6084/m9.figshare.13161009
title: Additional file 5 of Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts

description: Additional file 5. Discordant twins paired T-test 505 transcripts.
DOI: 10.6084/m9.figshare.13161009.v1
title: Additional file 5 of Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts

description: Additional file 5. Discordant twins paired T-test 505 transcripts.
DOI: 10.6084/m9.figshare.13161012
title: Additional file 6 of Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts

description: Additional file 6. Discordance DEG correlation.
DOI: 10.6084/m9.figshare.13161015.v1
title: Additional file 7 of Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts

description: Additional file 7. Detailed methods.
DOI: 10.6084/m9.figshare.13161018.v1
title: Additional file 8 of Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts

description: Additional file 8. DEG Concordance between methods.
DOI: 10.6084/m9.figshare.13161015
title: Additional file 7 of Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts

description: Additional file 7. Detailed methods.
DOI: 10.6084/m9.figshare.13161012.v1
title: Additional file 6 of Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts

description: Additional file 6. Discordance DEG correlation.
DOI: 10.21227/mr59-cq93
title: Baseline

description: Baseline
DOI: 10.5281/zenodo.4154456
title: MontoloSHACLStats

description: This dataset contains a small corpus of SHACL shapes (raw-* directories)<br> which were downloaded using the NodeJS script get-content.js and the config files of the download-config directory from GitHub and web resources. Constraint use statistics (stats-* directories) were generated using montolo (https://w3id.org/montolo) and a ptyhon script (https://zenodo.org/record/3989145).<br> These statistics are described in RDF following the montolo vocabulary (https://zenodo.org/record/3343335). Changelog: v1.0.1: added more sources added statistics for the SHACL constraint type sh:nodeKind
DOI: 10.5281/zenodo.3988929
title: MontoloSHACLStats

description: This dataset contains a small corpus of SHACL shapes (raw-* directories)<br> which were downloaded using the NodeJS script get-content.js and the config files of the download-config directory from GitHub and web resources. Constraint use statistics (stats-* directories) were generated using montolo (https://w3id.org/montolo) and a ptyhon script (https://zenodo.org/record/3989145).<br> These statistics are described in RDF following the montolo vocabulary (https://zenodo.org/record/3343335). Changelog: v1.0.1: added more sources added statistics for the SHACL constraint type sh:nodeKind
DOI: 10.5281/zenodo.4154657
title: input files for " Martini bead form factors for nucleic-acids and their application in the refinement of protein/nucleic-acid complexes against SAXS data".

description: input files for " Martini bead form factors for nucleic-acids and their application in the refinement of protein/nucleic-acid complexes against SAXS data", cf plumed-nest
DOI: 10.13012/b2idb-8212056_v1
title: Included Articles from Cochrane Reviews

description: The data file contains a list of included studies with their detailed metadata, taken from Cochrane reviews which were used in a project associated with the manuscript "An in-situ evaluation of the RCT Tagger using 7413 articles included in 570 Cochrane reviews with RCT-only inclusion criteria".
DOI: 10.6084/m9.figshare.13161164.v1
title: Additional file 10 of Multi-tissue transcriptome analysis using hybrid-sequencing reveals potential genes and biological pathways associated with azadirachtin A biosynthesis in neem (azadirachta indica)

description: Additional file 10 Table S8. Potential active sites identified on the CYP450s.