cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2m1k2
title: Data from: Short-term herbivory has long-term consequences in warmed and ambient high Arctic tundra

description: Climate change is occurring across the world, with effects varying by
 ecosystem and region but already occurring quickly in high-latitude and
 high-altitude regions. Biotic interactions are important in determining
 ecosystem response to such changes, but few studies have been long-term in
 nature, especially in the High Arctic. Mesic tundra plots on Svalbard,
 Norway, were subjected to grazing at two different intensities by captive
 Barnacle geese from 2003–2005, in a factorial design with warming by Open
 Top Chambers. Warming manipulations were continued through 2014, when we
 measured vegetation structure and composition as well as growth and
 reproduction of three dominant species in the mesic meadow. Significantly
 more dead vascular plant material was found in warmed compared to ambient
 plots, regardless of grazing history, but in contrast to many short-term
 experiments no difference in the amount of living material was found. This
 has strong implications for nutrient and carbon cycling and could feed
 back into community productivity. Dominant species showed increased
 flowering in warmed plots, especially in those plots where grazing had
 been applied. However, this added sexual reproduction did not translate to
 substantial shifts in vegetative cover. Forbs and rushes increased
 slightly in warmed plots regardless of grazing, while the dominant shrub,
 Salix polaris, generally declined with effects dependent on grazing, and
 the evergreen shrub Dryas octopetala declined with previous intensive
 grazing. There were no treatment effects on community diversity or
 evenness. Thus despite no changes in total live abundance, a typical
 short-term response to environmental conditions, we found pronounced
 changes in dead biomass indicating that tundra ecosystem processes respond
 to medium- to long-term changes in conditions caused by 12 seasons of
 summer warming. We suggest that while high arctic tundra plant communities
 are fairly resistant to current levels of climate warming, underlying
 ecosystem processes are beginning to change. In addition, even short bouts
 of intense herbivory can have long-term consequences for some species in
 these communities.
description: Adventdalen_mesic_2014_communityData was collected at mesic meadow site in Adventdalen valley (78.19ºN, 15.93ºE) of Svalbard in July 2014. A warming treatment by Open Top Chambers (OTCs) was initiated on the site in 2003. Every year between 2003 and 2014, OTCs were placed at the site in late spring and removed each autumn. Within each block, plots were also randomly distributed between three levels of a grazing treatment by captive Barnacle Geese in 2003-2005: no grazing (UG), intermediate (low) grazing (LG), and high grazing, (HG). Grazing treatments were discontinued after 2005. Site setup and treatments are further described in Cooper et al 2004, 2006. For details of community and species-specific measurements taken in 2014, see ReadMe file.
DOI: 10.5061/dryad.2sn57
title: Data from: Increased novel single nucleotide polymorphisms in weedy rice populations associated with the change of farming styles: Implications in adaptive mutation and evolution

description: Substantial genetic variation is found in weedy rice (Oryza sativa f.
 spontanea Roshev.) populations from different rice-planting regions with
 the change of farming styles. To determine the association of such genetic
 variation with rice farming changes is critical for understanding the
 adaptive evolution of weedy rice. We studied weedy-rice specific novel
 SNPs by genome-wide comparison between DNA sequences of weedy and
 cultivated rice, in addition to PCR fingerprinting at 22 selected novel
 SNP loci in weedy rice populations. A great number of novel SNPs were
 identified across the weedy rice genome. High frequencies of the novel
 SNPs were determined at the 22 selected loci, although with considerable
 variation among weedy rice populations in different rice-planting regions.
 The highest frequency (~57%) of novel SNPs was identified in weedy rice
 populations from Jiangsu that experienced the most dramatic changes in
 rice farming styles, including the shift from transplanting to direct
 seeding, and from indica to japonica varieties. The lowest frequency
 (~29%) was detected in weedy rice populations from Northeast China where
 rice farming has a relatively less change. The association between
 frequencies of novel SNPs in weedy rice populations and the extent of
 changes in rice farming styles suggests the critical role of adaptive
 mutation and accumulation of the mutation influenced by human activities
 in the rapid evolution of weedy rice.
description: Table
 S1The
 average frequency (%) of novel SNPs (single nucleotide polymorphisms) at
 22 loci (L1-L22) determined in 15 weedy rice populations from Jiangsu
 (JS1-JS6), Guangdong (GD1-GD3) provinces, and northeastern China
 (NE1-NE6). Numbers in parenthesis indicate standard
 errors.
DOI: 10.15468/dl.9fktqx
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sigmodontomys aphrastus"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001259-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.92kg0
title: Data from: Frugivores and cheap fruits make fruiting fruitful

description: Animal seed dispersal provides an important ecosystem service by strongly
 benefiting plant communities. There are several theoretical studies on the
 ecology of plant-animal seed-disperser interactions, but few studies have
 explored the evolution of this mutualism. Moreover, these studies ignore
 plant life-history and frugivore foraging behavior. Thus, it remains an
 open question what the conditions for the diversification of fruit traits
 are, in spite of the multitude of empirical studies on fruit trait
 diversity. Here we study the evolution of fruit traits using a
 spatially-explicit individual-based model, which considers the costs
 associated with adaptations inducing dispersal by frugivory, as well as
 frugivore foraging behavior and abundance. Our model predicts that these
 costs are the main determinants of the evolution of fruit traits, and that
 when the costs are not very high, the evolution of larger fruit traits
 (e.g. fleshy/colorful fruits) is controlled by the choosiness and response
 thresholds of the frugivores as well as their numerical abundance.
description: Simulation code of the
 evolution of frugivory without discriminationThis is a python script
 to do the simulations of the evolution of frugivory without
 frugivore's discrimination. This means that frugivores disperse seeds
 to any patch (occupied or empty). The approximate time for one simulation
 is 2 hours in a 50x50 lattice.simulation_frugivory_nodiscrimination.pySimulation code of the evolution of frugivory with frugivore's discriminationThis is a Python script to do the simulations of the evolution of frugivory when frugivores disperse only to empty patches. Approximate time of each simulation is 2 hours in a 50x50 lattice.simulation_frugivory_withdiscrimination.py
DOI: 10.5061/dryad.313hd
title: Data from: Body-size trends in Peromyscus (Rodentia: Cricetidae) on Vancouver Island, Canada, with comments on relictual gigantism

description: Large body size in Keen’s mouse, Peromyscus keeni, has been regarded as a
 relictual character that developed in times of geographic separation from
 P. maniculatus. However, body-size changes in Keen’s mouse have not been
 studied in detail. To address this problem the present paper compares the
 size of ancient and modern Peromyscus specimens from Vancouver Island.
 Results indicate that Late Pleistocene Peromyscus from Arch-2 Cave and
 early Holocene Peromyscus from Pellucidar Cave are significantly larger
 than those of modern P. maniculatus and P. keeni. Morphology and linear
 discriminant analyses support tentative assignment of several ancient
 specimens to P. keeni. Radiocarbon age estimates of 11,960±45 BP
 (14,004–13,637 cal BP) on a small mammal bone and 12,370±35 BP
 (14,695–14,148 cal BP) on Ursus arctos from Arch-2 Cave place these faunas
 on the island as relative sea level fell from a postglacial highstand,
 suggesting a local source for faunas with limited over-water dispersal
 capacities. Results of this study are consistent with insular relictual
 gigantism in Keen’s mouse, although some modification of the original
 hypothesis is needed to explain the smaller size of modern than ancient
 mice.
description: Supplementary Table
 1Supplementary Table 1.
 List of bone specimens from Arch-2 Cave, Vancouver Island,
 Canada.Steffen_Supplementary_Table_1.pdf
DOI: 10.15468/dl.q6kfmw
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyathopsis floribunda",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 60 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001260-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3929/ethz-b-000681924
title: Sea lice management in marine-based salmon farming: Public perceptions and acceptance in England and Scotland - Dataset
DOI: 10.3929/ethz-b-000721621
title: Industry stakeholders attitudes and beliefs about tail biting and docking in pigs – A case study in Switzerland and Spain - DATA
DOI: 10.5061/dryad.2362q
title: Data from: When to reproduce? A new answer to an old question

description: We present a life-history model based on the assumptions that juvenile
 survival follows a negative exponential function and that fecundity gain
 increases linearly with time to maturity. This model predicts that the
 optimal fitness is achieved when survival at maturity is 0.368 (e−1).
 Survival at the time of maturity is therefore an invariant. We tested this
 prediction by using published data from infection experiments with
 mammalian nematodes, where both the initial number of juveniles colonizing
 a habitat (host) and the numbers surviving at the time of maturation were
 known. We found that the mean survival at maturity, both across and within
 species, was remarkably close to our predicted mean. As a control, we also
 looked at studies where the parasite species was adapted to a host species
 other than the one used in the reported experiment. In these experiments
 the mean survival at maturity differed from what our model predicted.
 Maturation at a fixed survival probability therefore appears as an
 adaptive trait evolved in a predictable environment, in this case, a host
 species. Our result further suggests that measures designed to increase
 juvenile parasite mortality, such as drugs or vaccines, will select for
 faster developmental rates.
description: Data used in the
 literature surveydata.for.model.csv
DOI: 10.3929/ethz-b-000478194
title: Dataset for publication "The comparability of consumers’ behavior in virtual reality and real life: A validation study of virtual reality based on a ranking task"
DOI: 10.3929/ethz-b-000721328
title: Data recording and use of data tools for pig health management: perspectives of stakeholders in pig farming_Dataset
DOI: 10.5061/dryad.vp34f2q
title: Data from: Socioeconomic determinants of outcome after childhood arterial ischemic stroke

description: Objective: To determine whether lower socioeconomic status (SES) is
 associated with worse one-year neurological outcomes and reduced access to
 rehabilitation services in children with arterial ischemic stroke (AIS).
 Methods: From 2010-2014, Vascular Effects of Infection in Pediatric Stroke
 observational study prospectively enrolled and confirmed 355 children (29
 days -18 years) with AIS at 37 international centers. SES markers measured
 via parental interview included annual household income (US dollars (USD))
 at time of enrollment, maternal education level, and rural/suburban/urban
 residence. Receipt of rehabilitation services was measured by parental
 report. Pediatric Stroke Outcome Measure (PSOM) scores were categorized as
 0-1, 1.5-3, 3.5-6, 6.5-10. Univariate and multivariable ordinal logistic
 regression models examined potential predictors of outcome. Results: At
 12±3 months post-stroke, 320 children had documented outcome measurements,
 including 15 who had died. In univariate analysis, very low income
 (&lt;$10,000 USD), but not other markers of SES, was associated with
 worse outcomes (OR 3.13, 95% CI:1.43-6.88; p=0.004). In multivariable
 analysis, including adjustment for stroke etiology, this association
 persisted (OR 3.17, 95% CI:1.18-8.47; p=0.02). Income did not correlate
 with receiving rehabilitation services at one-year post-stroke; however,
 quality and quantity of services were not assessed. Conclusions: In a
 large multinational, prospective cohort of children with AIS, low income
 was associated with worse neurological outcomes when compared to those
 with higher income levels. This difference was not explained by stroke
 type, neurological comorbidities, or reported use of rehabilitation
 services. The root causes of this disparity are not clear, and warrant
 further investigation.
description: eTables
 SupplementalSupplemental tables for
 Socioeconomic Determinants of Outcome after Childhood Arterial Ischemic
 StrokeR1
 eTables_Supplemental_rev.docx
DOI: 10.3929/ethz-b-000527437
title: People’s perceptions of, willingness-to-take preventive remedies and their willingness-to-vaccinate during times of heightened health threats
DOI: 10.5061/dryad.4544k
title: Data from: Woody encroachment over 70 years in South African savannas: overgrazing, global change or extinction aftershock?

description: Woody encroachment in “open” biomes like grasslands and savannas is
 occurring globally.Both local and global drivers, including elevated CO2,
 have been implicated in these increases. The relative importance of
 different processes is unresolved as there are few multisite, multi
 land-use, evaluations of woody plant encroachment. We measured 70 years of
 woody cover changes over a 1020km2 area covering four land uses
 (commercial ranching, conservation with elephants, conservation without
 elephants and communal rangelands) across a rainfall gradient in South
 African savannas. Different directions of woody cover change would be
 expected for each different landuse, unless a global factor is causing the
 increases. Woody cover change was measured between 1940 and 2010 using the
 aerial photo record. Detection of woody cover from each aerial photograph
 was automated using eCognitions’ Object based image analysis (OBIA). Woody
 cover doubled in all land uses across the rainfall gradient, except in
 conservation areas with elephants in low rainfall savannas. Woody cover in
 2010 in low rainfall savannas frequently exceeded the maximum woody cover
 threshold predicted for African savannas. The results indicate that a
 global factor, of which elevated CO2 is the likely candidate, may be
 driving encroachment. Elephants in low rainfall savannas prevent
 encroachment and localized megafaunal extinction is a probable additional
 cause of encroachment.
description: Tree cover change
 data%
 woody cover as measured from aerial photographs using Definiens ECognition
 between 1940 - 2010. Each data point represents cover measured across 4
 common land uses (conservation areas without elephants, conservation areas
 with elephants, communal rangelands, and cattle ranches) in untransformed
 savannas sites across north-eastern South Africa.
DOI: 10.5061/dryad.v60jk42
title: Data from: Modeling the impact of Plasmodium falciparum sexual stage immunity on the composition and dynamics of the human infectious reservoir for malaria in natural settings

description: Malaria transmission remains high in Sub-Saharan Africa despite
 large-scale implementation of malaria control interventions. A
 comprehensive understanding of the transmissibility of infections to
 mosquitoes may guide the design of more effective transmission reducing
 strategies. The impact of P. falciparum sexual stage immunity on the
 infectious reservoir for malaria has never been studied in natural
 settings. Repeated measurements were carried out at start-wet, peak-wet
 and dry season, and provided data on antibody responses against
 gametocyte/gamete antigens Pfs48/45 and Pfs230 as anti-gametocyte
 immunity. Data on high and low-density infections and their infectiousness
 to anopheline mosquitoes were obtained using quantitative molecular
 methods and mosquito feeding assays, respectively. An event-driven model
 for P. falciparum sexual stage immunity was developed and fit to data
 using an agent based malaria model infrastructure. We found that Pfs48/45
 and Pfs230 antibody densities increased with increasing concurrent
 gametocyte densities; associated with 55–70% reduction in oocyst intensity
 and achieved up to 44% reduction in proportions of infected mosquitoes. We
 showed that P. falciparum sexual stage immunity significantly reduces
 transmission of microscopic (p &lt; 0.001) but not submicroscopic (p =
 0.937) gametocyte infections to mosquitoes and that incorporating sexual
 stage immunity into mathematical models had a considerable impact on the
 contribution of different age groups to the infectious reservoir of
 malaria. Human antibody responses to gametocyte antigens are likely to be
 dependent on recent and concurrent high-density gametocyte exposure and
 have a pronounced impact on the likelihood of onward transmission of
 microscopic gametocyte densities compared to low density infections. Our
 mathematical simulations indicate that anti-gametocyte immunity is an
 important factor for predicting and understanding the composition and
 dynamics of the human infectious reservoir for malaria.
description: IndividualHumanbased_datasetThis csv_file contains study participant information (anonymous ID, demographics such as age), serological data, parasite data (microscopy and molecular method), mosquito data (fed mosquito, dissected mosquitoes and oocyst) per participant etc...Dataset_dryadrepo.csv
DOI: 10.5061/dryad.mf122
title: Data from: Clinal variation in seed traits influencing life cycle timing in Arabidopsis thaliana.

description: Early life history transitions are crucial determining lifetime survival
 and fecundity. Adaptive evolution in early life history traits involves a
 complex interplay between the developing plant and its current and future
 environments. We examined the plant’s earliest life history traits,
 dissecting an integrated suite of pre-germination processes: primary
 dormancy, thermal induction of secondary dormancy, and seasonal
 germination response. We examined genetic variation in the three
 processes, genetic correlations among the processes, and the scaling of
 germination phenology with the source populations’ climates. A spring
 annual life-history was associated with genetic propensities toward both
 strong primary dormancy and heat-induced secondary dormancy, alone or in
 combination. Lineages with similar winter and spring annual life-history
 have both weak primary dormancy and weak thermal dormancy induction. A
 genetic bias to adopt a spring annual strategy mediated by rapid loss of
 primary dormancy, and high thermal dormancy induction is associated with a
 climatic gradient characterized by increasing temperature in summer and
 rainfall in winter. This study highlights the importance of considering
 combinations of multiple genetically-based traits along a climatic
 gradient as adaptive strategies differentiating annual plant life-history
 strategies. Despite the genetic-climatic cline, there is polymorphism for
 life-history strategies within population, classically interpreted as
 bet-hedging in an unpredictable world.
description: data_by_lineagecannonical_corrs_by_populationMETADATA
DOI: 10.5281/zenodo.17877160
title: SHM_120897_HST_3D

description: Photogrammetric 3D model of a black earthenware bucket with a curved handle and a rounded base. The bucket was collected in Kalmar, Sweden and is currently held in the collections of the National Historical Museums in Stockholm. 

 

Link to the Dynamic Collection platform 

https://dyncolldev.ht.lu.se/plus/artifact_view.php?item=516

Link to Sök I Samlingarna  

https://samlingar.shm.se/object/6D0AFCE5-378A-4ABE-96B2-5FE955F245A8
DOI: 10.5281/zenodo.17877159
title: SHM_120897_HST_3D

description: Photogrammetric 3D model of a black earthenware bucket with a curved handle and a rounded base. The bucket was collected in Kalmar, Sweden and is currently held in the collections of the National Historical Museums in Stockholm. 

 

Link to the Dynamic Collection platform 

https://dyncolldev.ht.lu.se/plus/artifact_view.php?item=516

Link to Sök I Samlingarna  

https://samlingar.shm.se/object/6D0AFCE5-378A-4ABE-96B2-5FE955F245A8
DOI: 10.5061/dryad.82j1g
title: Data from: Mechanisms of biotic resistance across complex life cycles

description: 1. Biotic resistance is the ability of communities to inhibit the
 establishment, spread or impact of novel species. However, the
 interactions that underlie biotic resistance depend heavily on the
 contexts in which species interact. Consequently, studies of biotic
 resistance that consider single processes, patches, species or
 life-history stages may provide an incomplete picture of the capacity for
 communities to resist invasion. 2. Many organisms have multiphasic life
 cycles, where individuals can occupy distinct niches at different stages
 of the life-history. Generally, studies of biotic resistance focus on
 interactions within a single life-history stage, and interactions at other
 life-history stages are overlooked. Here, we demonstrate that different
 mechanisms of biotic resistance occur across the life history and together
 limit the invasion success of an introduced marine invertebrate (Ciona
 intestinalis) in northern California. 3. We tested the role of
 interactions (competition and predation) with the resident community in
 limiting the abundance of Ciona through experiments conducted on
 fertilization, larval survival, settlement, early post-settlement
 survival, and the survival of juveniles and adults. 4. Under some
 circumstances, Ciona became abundant in mid-successional stages and showed
 more rapid growth rates than a morphologically similar native species,
 Ascidia ceratodes. However, predators reduced Ciona abundance much more
 than that of Ascidia at several life stages. 5. Furthermore, Ciona
 appeared to be a weaker competitor at the adult stage. Early life-history
 interactions with other sessile species at the fertilization, larval and
 recruit stages had modest to no effects on Ciona abundance. 6. The
 presence of biotic resistance mechanisms acting at multiple life stages,
 and potentially under different conditions, suggests that different
 components of biotic resistance interact to enhance the resident
 community's resistance to invasion.
description: Fig.
 2aFig.
 2bFig. 3Fig. 4Fig. 5Fig.
 S1aFig.
 S1bFig.
 S2Fig.
 S3Fig.
 S4Fig.
 S5