cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8289877
title: Quantification of multiple environmental controls on lipid biomarkers in common marine diatoms and dinoflagellates

description: In the monocultures of two algal species, i.e., <em>Phaeodactylum tricornutum</em> (Bacillariophyceae; strain MACC/B254) and <em>Prorocentrum minimum</em> (Dinophyceae; strain HYESL63), we investigated responses of lipid biomarkers (sterols and fatty acids (FAs)) to different temperatures (12, 18 and 24℃), nitrogen and phosphorus concentrations and their molar ratios (N:P ratios) of 10:1, 24:1 and 63:1. Algal cells were counted daily with an improved Neubauer hemacytometer (Glaswarenfabrik Karl Hecht GmbH) under a microscope (Olympus CX41). To analyze particulate organic carbon (POC), sterols and FAs, algal cells at steady-state conditions were harvested on pre-combusted GF/F filters (Whatman) after filtering 15-30 mL of cultures depending on cell density in the culture flask and the parameters to be determined. Samples were kept at − 80℃ after filtration. POC was determined by an elemental analyzer (Thermo Flash 2000) (Sharp 1974, https://doi.org/10.4319/lo.1974.19.6.0984). Sterols and FAs were analyzed according to the methods in Eglinton et al. (1996 https://doi.org/10.1021/ac9508513), Galy et al. (2011, https://doi.org/10.1016/j.epsl.2011.02.003) and Zhao et al. (2006, https://doi.org/10.1016/j.orggeochem.2005.08.022). The trimethylsilyl ether derivatives of sterols and fatty acid methyl esters (FAMEs) were analyzed in a gas chromatograph (Agilent Technologies 8890A) equipped with a flame ionization detector, and a HP-1 column (50 m, 0.32 mm i.d., 0.17 μm film; Agilent J&W) and a SP-2560 column (100 m, 0.25 mm i.d., 0.20 μm film; Supelco) for sterol and FAME analysis, respectively. The identification of sterols was performed by gas chromatography-mass spectrometry (GC-MS) analysis at 70 eV using an Agilent 7890B GC (HP-5MS column; 30 m, 0.25 mm i.d., 0.25 μm film; Agilent J&W) connected to an Agilent MSD 5977B mass selective detector (ion source temperature 230℃). Sterols were identified be comparison of the mass spectra of their trimethylsilyl ether derivatives to those of published GC-MS values (Lisboa et al. 1982, https://doi.org/10.1016/0305-0491(82)90281-4; Taipale et al. 2016, https://doi.org/10.3389/fpls.2016.00212), based on the molecular ion and prominent ions. The following sterols were identified: brassicasterol/epi-brassicasterol,and dinosterol. FAs were identified with reference to the standard Supelco 37 component FAME mixture. C-normalized (on a per POC basis; μg mg C-1) and per-cell (pg cell-1) contents of sterols and FAs were presented, and FA proportions (% of total fatty acids (TFAs)) were also reported in the dataset.
description: This study was financially supported by Laoshan Laboratory (grant number LSKJ202204005) and the National Natural Science Foundation of China (grant numbers 41876118).
DOI: 10.5281/zenodo.8293788
title: Quantification of multiple environmental controls on lipid biomarkers in common marine diatoms and dinoflagellates

description: In the monocultures of two algal species, i.e., <em>Phaeodactylum tricornutum</em> (Bacillariophyceae; strain MACC/B254) and <em>Prorocentrum minimum</em> (Dinophyceae; strain HYESL63), we investigated responses of lipid biomarkers (sterols and fatty acids (FAs)) to different temperatures (12, 18 and 24℃), nitrogen and phosphorus concentrations and their molar ratios (N:P ratios) of 10:1, 24:1 and 63:1. Algal cells were counted daily with an improved Neubauer hemacytometer (Glaswarenfabrik Karl Hecht GmbH) under a microscope (Olympus CX41). To analyze particulate organic carbon (POC), sterols and FAs, algal cells at steady-state conditions were harvested on pre-combusted GF/F filters (Whatman) after filtering 15-30 mL of cultures depending on cell density in the culture flask and the parameters to be determined. Samples were kept at − 80℃ after filtration. POC was determined by an elemental analyzer (Thermo Flash 2000) (Sharp 1974, https://doi.org/10.4319/lo.1974.19.6.0984). Sterols and FAs were analyzed according to the methods in Eglinton et al. (1996 https://doi.org/10.1021/ac9508513), Galy et al. (2011, https://doi.org/10.1016/j.epsl.2011.02.003) and Zhao et al. (2006, https://doi.org/10.1016/j.orggeochem.2005.08.022). The trimethylsilyl ether derivatives of sterols and fatty acid methyl esters (FAMEs) were analyzed in a gas chromatograph (Agilent Technologies 8890A) equipped with a flame ionization detector, and a HP-1 column (50 m, 0.32 mm i.d., 0.17 μm film; Agilent J&W) and a SP-2560 column (100 m, 0.25 mm i.d., 0.20 μm film; Supelco) for sterol and FAME analysis, respectively. The identification of sterols was performed by gas chromatography-mass spectrometry (GC-MS) analysis at 70 eV using an Agilent 7890B GC (HP-5MS column; 30 m, 0.25 mm i.d., 0.25 μm film; Agilent J&W) connected to an Agilent MSD 5977B mass selective detector (ion source temperature 230℃). Sterols were identified be comparison of the mass spectra of their trimethylsilyl ether derivatives to those of published GC-MS values (Lisboa et al. 1982, https://doi.org/10.1016/0305-0491(82)90281-4; Taipale et al. 2016, https://doi.org/10.3389/fpls.2016.00212), based on the molecular ion and prominent ions. The following sterols were identified: brassicasterol/epi-brassicasterol,and dinosterol. FAs were identified with reference to the standard Supelco 37 component FAME mixture. C-normalized (on a per POC basis; μg mg C-1) and per-cell (pg cell-1) contents of sterols and FAs were presented, and FA proportions (% of total fatty acids (TFAs)) were also reported in the dataset.
description: This study was financially supported by Laoshan Laboratory (grant number LSKJ202204005) and the National Natural Science Foundation of China (grant numbers 41876118).
DOI: 10.4121/22096397.v1
title: Data presented in the paper: Subsidence reveals potential impacts of future sea level rise on inhabited mangrove coasts

description: To shed light on the future of low-lying rural areas in the face of sea level rise, we studied a 20 km long rural coastline neighbouring a sinking city in Indonesia (8 – 20 cm yr-1), hereafter called studyarea. Through the collection of data across 7 main topics, we show that villages experienced significant RSLR near the city. Mangroves also experienced RSLR near the city, although to a lesser degree, and were able to respond to RSLR rates 4.3 cm yr-1 through various root adaptations. The seven main investigated topics, and their respective datasets: <br>0. village population migration1. village house experienced RSLR2. mangrove experienced RSLR2a. mangrove experienced RSLR2b. rainfall data3. foreshore dynamics4. mangrove bed-level dynamics based on pneumatophore markings5. mangrove root acclimation5.1. pneumatophore markings (same dataset as 4.)5.2. rootmat formation5.3. sedimentation experiment6. lateral mangrove die-back6.1. dead trees and summary of all datasets as used in Figure 4 of the manuscript6.2. pneumatophore mortality (same dataset as 4.)<br><br>
DOI: 10.6084/m9.figshare.24042843.v1
title: One-year dataset of hourly air quality parameters from 100 air purifiers used in China residential buildings

description: Household air purifiers have been widely used as an effective approach to improving indoor air quality. Air purifiers can automatically record indoor air quality parameters, providing valuable data resources for in-depth data-driven analysis. This work presents a one-year hourly indoor air quality dataset collected by household air purifiers in 100 residential homes in 18 provinces across 4 different climate zones in China. The data were collected from July 1, 2021, to July 1, 2022. The concentrations of formaldehyde, PM<sub>2.5</sub>, TVOC, temperature, relative humidity, on/off status and the airflow rate of air purifiers during operations were recorded hourly.
DOI: 10.6084/m9.figshare.24032061.v1
title: Ahn (2013) [ Table 2&3 ]

description: Table 2 & 3 in the manuscript
DOI: 10.6084/m9.figshare.24046965
title: <b>Analysis of chromosomal structural variations in patients with </b><b>recurrent</b><b> </b><b>spontaneous</b><b> </b><b>abortion</b><b> using optical genome mapping</b>

description: The results of OGM, ONT, Sanger sequencing and karyotypes of seven patients.
DOI: 10.5281/zenodo.8288259
title: Recalibration of the lunar chronology due to spatial cratering-rate variability - Data and code

description: CR_moon.csv: Relative cratering rate shown in Fig.2. The<strong> </strong>data are provided over the full range of latitudes and longitudes, with a 1-degree bin. cr_lefeuvre2011.txt: Relative cratering rate proposed by Le Feuvre and Wieczorek (2011). The<strong> </strong>data are provided over the full range of latitudes and longitudes, with a 1-degree bin. lunar_calib_points.csv: Table summarising the lunar chronology calibration points used in this study. Lagain_AA_convert_age.m: Matlab code converting model ages of Plutarch and Kirkwood craters from Neukum et al. (2001) chronology into the one presented in this study. The code also computes the chronology model from Le Feuvre and Wieczorek (2011) and the one presented in this study for different locations, and compares it with the Neukum et al. (2001) chronology.
DOI: 10.5281/zenodo.8288258
title: Recalibration of the lunar chronology due to spatial cratering-rate variability - Data and code

description: CR_moon.csv: Relative cratering rate shown in Fig.2. The<strong> </strong>data are provided over the full range of latitudes and longitudes, with a 1-degree bin. cr_lefeuvre2011.txt: Relative cratering rate proposed by Le Feuvre and Wieczorek (2011). The<strong> </strong>data are provided over the full range of latitudes and longitudes, with a 1-degree bin. lunar_calib_points.csv: Table summarising the lunar chronology calibration points used in this study. Lagain_AA_convert_age.m: Matlab code converting model ages of Plutarch and Kirkwood craters from Neukum et al. (2001) chronology into the one presented in this study. The code also computes the chronology model from Le Feuvre and Wieczorek (2011) and the one presented in this study for different locations, and compares it with the Neukum et al. (2001) chronology.
DOI: 10.6084/m9.figshare.24046305
title: Two exogenous genome introgression strategies in silver carp (Hypophthalmichthys molitrix): horizontal gene transfer from gut microbiome and inter-family introgression from common carp

description: Table of metagenome gene annotation in 11 <i>species</i> of <i>fish</i> with <i>different</i> feeding habits
DOI: 10.6084/m9.figshare.24046305.v1
title: Two exogenous genome introgression strategies in silver carp (Hypophthalmichthys molitrix): horizontal gene transfer from gut microbiome and inter-family introgression from common carp

description: Table of metagenome gene annotation in 11 <i>species</i> of <i>fish</i> with <i>different</i> feeding habits
DOI: 10.5281/zenodo.4362697
title: Confocal and micro-CT data of Notocupes denticollis, holotype, STJ311

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Notocupes denticollis</em> (STJ311) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "New species of <em>Notocupes </em>from the Middle Jurassic Daohugou beds, with discussion on the circumscription of the genus" (DOI:10.11646/palaeoentomology.6.4.11). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software. Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 16.916 μm; power, 4 W; acceleration voltage, 50 kV; exposure time, 2 s; projections, 2001. The TIFF stack is provided.
DOI: 10.5281/zenodo.4362696
title: Confocal and micro-CT data of Notocupes denticollis, holotype, STJ311

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Notocupes denticollis</em> (STJ311) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "New species of <em>Notocupes </em>from the Middle Jurassic Daohugou beds, with discussion on the circumscription of the genus" (DOI:10.11646/palaeoentomology.6.4.11). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software. Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 16.916 μm; power, 4 W; acceleration voltage, 50 kV; exposure time, 2 s; projections, 2001. The TIFF stack is provided.
DOI: 10.5281/zenodo.4737035
title: Confocal and micro-CT data of Notocupes sp., BA202101

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the specimen of <em>Notocupes</em> sp. (BA202101) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "New species of <em>Notocupes </em>from the Middle Jurassic Daohugou beds, with discussion on the circumscription of the genus" (DOI:10.11646/palaeoentomology.6.4.11). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software. Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 14.096 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 4 s; projections, 2001. The TIFF stack is provided.
DOI: 10.5281/zenodo.4737034
title: Confocal and micro-CT data of Notocupes sp., BA202101

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the specimen of <em>Notocupes</em> sp. (BA202101) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "New species of <em>Notocupes </em>from the Middle Jurassic Daohugou beds, with discussion on the circumscription of the genus" (DOI:10.11646/palaeoentomology.6.4.11). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software. Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 14.096 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 4 s; projections, 2001. The TIFF stack is provided.
DOI: 10.6084/m9.figshare.22492834
title: Supplementary File 20

description: Compressed folder containing alignments, MCMCtree control files and calibrations used for dating genome duplications in vertebrates.
DOI: 10.6084/m9.figshare.22492834.v1
title: Supplementary File 20

description: Compressed folder containing alignments, MCMCtree control files and calibrations used for dating genome duplications in vertebrates.
DOI: 10.6084/m9.figshare.24047022
title: FINAL REPORT

description: The document contains the final report that student'teachers submitted at the end of the of the process of te teaching practicum.
DOI: 10.6084/m9.figshare.24046986
title: ACTION PLAN

description: This document contains one of the partial action plan charts that was designed by student-teachers to develop the pedagogical project during the teaching practicum .
DOI: 10.6084/m9.figshare.24046959
title: INTERVIEW PROTOCOL

description: This document contains the questions that oriented the interview to the English student-teachers.
DOI: 10.6084/m9.figshare.24030210
title: INTERVIEW TRANSCRIPTS

description: This documents contain transcripts of the student-teachers' interviews.
DOI: 10.6084/m9.figshare.24030201
title: REFLECTIVE JOURNALS.pdf

description: Here the reader can find some of the reflective journals that student-teachers wrote during the teaching practicum.
DOI: 10.6084/m9.figshare.24040563.v6
title: <b>BigDataAD Benchmark Dataset</b>

description: The largest real-world dataset for multivariate time series anomaly detection (MTSAD) from the Hologres AIOps system in the Alibaba Cloud platform.All the metrics and labels in our dataset are derived from real-world scenarios. All metrics were obtained from the Hologres instance monitoring system and cover a rich variety of metric types, including <b>CPU usage, queries per second (QPS) and latency</b>, which are related to many important modules within Hologres. We obtain labels from the ticket system, which integrates three main sources of instance anomalies: user service requests, instance unavailability and fault simulations . User service requests refer to tickets that are submitted directly by users, whereas instance unavailability is typically detected through existing monitoring tools or discovered by Site Reliability Engineers (SREs). Since the system is usually very stable, we augment the anomaly samples by conducting fault simulations. Fault simulation refers to a special type of anomaly, planned beforehand, which is introduced to the system to test its performance under extreme conditions. All records in the ticket system are subject to follow-up processing by engineers, who meticulously mark the start and end times of each ticket. This rigorous approach ensures the accuracy of the labels in our dataset.
DOI: 10.6084/m9.figshare.24047076
title: The combination of curcumin and berberine inhibits the progression of hepatocellular carcinoma.zip

description: <b>These data are the supporting data for paper "The combination of curcumin and berberine inhibits the progression of hepatocellular carcinoma</b><b>".</b>
DOI: 10.6084/m9.figshare.24047076.v1
title: The combination of curcumin and berberine inhibits the progression of hepatocellular carcinoma.zip

description: <b>These data are the supporting data for paper "The combination of curcumin and berberine inhibits the progression of hepatocellular carcinoma</b><b>".</b>
DOI: 10.6084/m9.figshare.11339042
title: swu sequences for SDATA-19-01017.txt

description: List of markers with forward and reverse sequences alongwith start and stop positions<br>
DOI: 10.6084/m9.figshare.11339042.v1
title: swu sequences for SDATA-19-01017.txt

description: List of markers with forward and reverse sequences alongwith start and stop positions<br>
DOI: 10.25345/c5280586f
title: MassIVE MSV000092777 - Acute to prolonged lif cycle proteomic profiling of heat shock SGs
title: time-resolved proteomic profiling of SGs from cultured human U2OS cells over a prolonged heat-shock (HS) and a successive recovery period, sampling at the 6 time points of HS exposure (10, 20, 30, 60, 120, 180 min), as well as 2 time points of recovery (5, 10 min). From the sampled cells, we prepared SG samples using a differential centrifugation plus endogenous G3BP1 immunoprecipitation protocol. Peptides were subsequently TMT-labeled and analyzed by quantitative LC-MS/MS. In G3BP1 dataset, rep1-rep3, HS-10, 20, 30, 60, 120, 180, re5, re10, SG-ls, G3BP1-IP samples were labeled with TMT-126, 127N, 127C, 128N, 128C,129N, 129C, 130N, 130C, 131 label Reagents, respectively; In G3BP1_HS0, HS-0_rep1, HS-0_rep2, HS-0_rep3, HS-10_rep1, HS-10_rep2, HS-10_rep3, HS-60_rep1, HS-60_rep2, HS-60_rep3 samples were labeled with TMT-126, 127N, 127C, 128N, 128C,129N, 129C, 130N, 130C label Reagents, respectively. In CAPRIN1 dataset, rep1-rep3, HS-0, 10, 20, 30, 60, 120, 180, re5, re10 samples were labeled with TMT-126, 127N, 127C, 128N, 128C,129N, 129C, 130N, 130C label Reagents, respectively
DOI: 10.6084/m9.figshare.24047130
title: Design and Validation of a Questionnaire to Measure the Attitudes of Health Professionals Towards Immigrants (AHPI) - DATASET and CODEBOOK

description: The aim of the article is to describe the validation process of a research tool used to measure the intensity and direction of medical personnel's attitudes towards immigrant patients. An instrument validation design with a cross-sectional survey was conducted. The validation process was carried out in two phases. In phase 1, the content validity of the tool was analyzed. The competent judges method was used. The reliability of the judges was verified in terms of the consistency of evaluations (the I-CVI index was calculated). In phase 2, the questionnaire was tested among 340 healthcare professionals who have professional contact with immigrants, in terms of its factorial validity (exploratory and confirmatory factor analysis) and internal consistency (reliability measured by Cronbach's alpha coefficient) and absolute stability (measured by the test-retest method).
DOI: 10.5281/zenodo.8289730
title: MD simulations of the Sec61/TRAP/ribosome complex Amber force fields

description: Simulation data for the Sec61/TRAP/ribosome complex embedded in an ER membrane mimic. Simulations are performed using GROMACS and with the all-atom Amber family of force fields. The uploaded trajectory (xtc) contains the coordinates stored every 2 ns of the 2-µs-long simulations. The output energy file (edr), run input file (tpr), and the continue point (cpt) at 2 µs are provided. All required input files are also provided to regenerate the run input file: initial structures (gro), index files (ndx), topologies (top and itp), and the simulation parameter file (mdp). Details of the setup, simulation, and analysis of the systems is available in the preprint: https://doi.org/10.1101/2022.09.30.510141
DOI: 10.5281/zenodo.8289729
title: MD simulations of the Sec61/TRAP/ribosome complex Amber force fields

description: Simulation data for the Sec61/TRAP/ribosome complex embedded in an ER membrane mimic. Simulations are performed using GROMACS and with the all-atom Amber family of force fields. The uploaded trajectory (xtc) contains the coordinates stored every 2 ns of the 2-µs-long simulations. The output energy file (edr), run input file (tpr), and the continue point (cpt) at 2 µs are provided. All required input files are also provided to regenerate the run input file: initial structures (gro), index files (ndx), topologies (top and itp), and the simulation parameter file (mdp). Details of the setup, simulation, and analysis of the systems is available in the preprint: https://doi.org/10.1101/2022.09.30.510141
DOI: 10.6084/m9.figshare.24046011
title: Figures

description: The model output data are shown in Figures 2, S2, and S5, together with the MATLAB scripts used to create the plots.
DOI: 10.5281/zenodo.8205692
title: ToF-RGB Fusion Dataset

description: This dataset contains depth maps recorded by an ESPROS epc635 Time-of-Flight camera and RGB images from a Raspberry Pi camera module V2, for use in the fusion of these sensors to increase the resolution and framerate of the ToF camera. The dataset contains three scenes, one of a paper dodecahedron and two of a wooden grid with holes of various sizes, with between 86 and 230 consecutive video frames. In each scene, the camera moves toward the object. Ground truth depth maps were created in Blender and are provided alongside the recorded images. The framerate of the RGB camera is 24 fps. The ToF images are captured at 12 fps but show large fluctuations and are not synchronized with the RGB camera. The content of the included files are: ToF Dataset: Recorded HDR ToF camera depth maps (160x60), ground truth depth maps (2560x960), and recorded RGB images (2560x960). The depth maps contain the depth values in millimeters, stored as 16-bit PNG files. RGB and ground truth depth maps are named continuously by their frame number. The ToF depth maps are named with a frame number, based on the closest RGB image in the time domain. Additional Data: All data used in the creation of the ToF dataset (All recorded depth maps and color images, calibration images of a 4x5 checkerboard calibration pattern with a square size of 43mm, calibration parameters, Blender files)