cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15515586
title: Dataset for manuscript "Intense Isopycnal Stirring and Double-Diffusion Contributing to Microscale Variance in the Kuroshio extension Front"

description: Data and codes for manuscript "Intense Isopycnal Stirring and Double-Diffusion Contributing to Microscale Variance in the Kuroshio extension Front" by Yuki Ikeda and Takeyoshi Nagai.
DOI: 10.5281/zenodo.15526026
title: Digital transformation ESG and EPU

description: Digital transformation ESG and EPU for analysis
DOI: 10.5281/zenodo.15526027
title: Digital transformation ESG and EPU

description: Digital transformation ESG and EPU for analysis
DOI: 10.15468/dl.gbfhuf
title: Occurrence Download

description: A dataset containing 1616 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xiphorhynchus atlanticus (Cory, 1916)"
 ]
}

 The dataset includes 1616 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003192-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mc6af
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-230.95933 -10.18413,-219.5972 -10.18413,-219.5972 2.14211,-230.95933 2.14211,-230.95933 -10.18413))",
 "Geometry POLYGON((130.33856 -6.97043,140.7044 -9.00961,140.73272 0.03926,130.33856 0.19503,130.33856 -6.97043))"
 ]
 },
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Casuarius casuarius (Linnaeus, 1758)",
 "Year 2020-2025"
 ]
}

 The dataset includes 24 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003191-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.utcpku
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Living Specimen)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Alcimandra cathcartii (Hook.f. & Thomson) Dandy"
 ]
}

 The dataset includes 34 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003193-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ex8txs
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron laetum J.J.Sm."
 ]
}

 The dataset includes 84 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003194-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xkwsc
title: Occurrence Download

description: A dataset containing 674 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea acanthogene Rusby"
 ]
}

 The dataset includes 674 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003195-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15526020
title: How do urban-dwelling bats cope with urbanisation? Sex-dependent plasticity of stress, microbiome and pathogen shedding

description: Dataset for the manuscript "How do urban-dwelling bats cope with urbanisation? Sex-dependent plasticity of stress, microbiome and pathogen shedding". This dataset includes :



a README.md file

the metadata of the bat samples (CSV file)
DOI: 10.5281/zenodo.15526021
title: How do urban-dwelling bats cope with urbanisation? Sex-dependent plasticity of stress, microbiome and pathogen shedding

description: Dataset for the manuscript "How do urban-dwelling bats cope with urbanisation? Sex-dependent plasticity of stress, microbiome and pathogen shedding". This dataset includes :



a README.md file

the metadata of the bat samples (CSV file)
DOI: 10.6084/m9.figshare.24259573
title: OpenDengue: data from the OpenDengue database

description: The OpenDengue project aims to build and maintain a database of dengue case counts for every dengue-affected country worldwide since 1990 or earlier. We collate data from a range of publicly available sources including ministry of health websites, peer-reviewed publications and other disease databases.The complete details, methodologies, and findings associated with this dataset are available in our research paper (https://doi.org/10.1038/s41597-024-03120-7).The latest database is available on our OpenDengue website (https://opendengue.org/data.html). Past and current versions are also available in the Opendengue Github repository (https://github.com/OpenDengue/master-repo).<b>File descriptor</b><b>Global summaries of data</b>: We provide three global summaries of the data in OpenDengue. We provide the best national estimate (<b>National_extract.csv</b>), the best temporal resolution (<b>Temporal_extract.csv</b>) and the best spatial resolution (<b>Spatial_extract.csv</b>). This allows users to customise their data extraction based on their research question. Each row in the data table contains a unique, non-overlapping location and time period with the associated dengue case data. The below codebook describes each variable.adm_0_name : administrative level 0/country nameadm_1_name : administrative level 1 nameadm_2_name : administrative level 2 namefull_name : full place nameISO_A0 : ISO country codeFAO_GAUL_code : Food and Agricultural Organization Global Administrative Unit Layer CodeRNE_iso_code : RNaturalEarth ISO codeIBGE_code : Brazilian Instituto Brasileiro de Geografia e Estatística (IBGE) codecalendar_start_date : the start date in calendar time with the format YYYY-mm-ddcalendar_end_date : the end date in calendar time with the format YYYY-mm-ddYear : yeardengue_total : the total dengue case count relating to the period and place (see dengue classification protocol and dengue double count protocol)case_definition_standardised : case definition after standardisationS_res : spatial resolutionT_res : temporal resolutionUUID : Universal Unique Identifier relating to the source file from which the data originates<br>
DOI: 10.57841/casdc.0005600
title: 东北大学先进金属材料组织性能与基因工程团队轻质合金数据集
DOI: 10.15468/dl.5ed2ex
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((131.20237 -0.50207,131.17359 -2.40143,134.32479 -2.3007,135.49031 -2.11364,134.48307 -0.89057,134.22407 0.04472,132.45421 0.50517,131.20237 -0.50207))",
 "TaxonKey is Rhododendron macgregoriae F.Muell."
 ]
}

 The dataset includes 21 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003197-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57841/casdc.0005601
title: 东北大学先进金属材料组织性能与基因工程团队大模型数据
DOI: 10.5281/zenodo.11203571
title: Time-current characteristics of ZrO2/Si photodetector

description: The text files contain data regarding the time-current characteristics of photodetectors comprised of a zirconium oxide (ZrO2) layer on top of a p-type silicon (Si) substrate. The thickness of the layer is approximately 5 nm. The bottom electrode of the device was made of aluminum, while the top contact consisted of tin indium oxide (ITO).

During the measurement, the samples were illuminated with light pulses of the frequency specified in the filename. The light source used, whether a laser with a wavelength of 1064 nm or an LED with a wavelength of 940 nm, was also indicated in the filename. Additionally, if the sample was poled before the measurement, it is specified in the filename.

One distinctive file, "ZrO2_TV_Remote.dat," contains data collected by the photodetector while illuminated with a conventional TV remote. The light spectra of the TV remote are available in the file named "TV_remote_spectra.dat". The wavelength of the maximum intensity is approximately 932 nm. The power of the light is approximately 2 mW, and the signal frequency is approximately 36 kHz. The remote operates under the standard RC5 protocol. This file provides specific information about the response of the photodetector to the signals emitted by a TV remote.
DOI: 10.5281/zenodo.11203572
title: Time-current characteristics of ZrO2/Si photodetector

description: The text files contain data regarding the time-current characteristics of photodetectors comprised of a zirconium oxide (ZrO2) layer on top of a p-type silicon (Si) substrate. The thickness of the layer is approximately 5 nm. The bottom electrode of the device was made of aluminum, while the top contact consisted of tin indium oxide (ITO).

During the measurement, the samples were illuminated with light pulses of the frequency specified in the filename. The light source used, whether a laser with a wavelength of 1064 nm or an LED with a wavelength of 940 nm, was also indicated in the filename. Additionally, if the sample was poled before the measurement, it is specified in the filename.

One distinctive file, "ZrO2_TV_Remote.dat," contains data collected by the photodetector while illuminated with a conventional TV remote. The light spectra of the TV remote are available in the file named "TV_remote_spectra.dat". The wavelength of the maximum intensity is approximately 932 nm. The power of the light is approximately 2 mW, and the signal frequency is approximately 36 kHz. The remote operates under the standard RC5 protocol. This file provides specific information about the response of the photodetector to the signals emitted by a TV remote.
DOI: 10.5281/zenodo.15321494
title: kbo paper sources and code for reproducing analyses

description:  kbo paper sources

Files

- `experiments.tar.gz`: files used to generate the use cases and figures.- `paper.tar.gz`: manuscript files.

Manuscript files are also available from GitHub: https://github.com/tmaklin/kbo-paper

Changelog



27 May 2025: first public version.


References

kbo

Sequence alignment with k-bounded matching statisticsTommi Mäklin, Jarno N Alanko, Elena Biagi, Simon J PuglisibioRxiv 2025: doi: 10.1101/2025.05.19.654936

Are reads required? dataset

Are reads required? High-precision variant calling from bacterial genome assembliesRyan R Wick, Louise M Judd, Timothy P Stinear, Ian R MonkAccess microbiology 2025, doi: 10.1099/acmi.0.001025.v2

Escherichia coli genomes

Plasmid-driven strategies for clone success in Escherichia coliSergio Arredondo-Alonso, Anna K Pöntinen, João A. Gama Rebecca A Gladstone et al.Nature communications 2025, doi: 10.1038/s41467-025-57940-1
DOI: 10.5281/zenodo.15321495
title: kbo paper sources and code for reproducing analyses

description:  kbo paper sources

Files

- `experiments.tar.gz`: files used to generate the use cases and figures.- `paper.tar.gz`: manuscript files.

Manuscript files are also available from GitHub: https://github.com/tmaklin/kbo-paper

Changelog



27 May 2025: first public version.


References

kbo

Sequence alignment with k-bounded matching statisticsTommi Mäklin, Jarno N Alanko, Elena Biagi, Simon J PuglisibioRxiv 2025: doi: 10.1101/2025.05.19.654936

Are reads required? dataset

Are reads required? High-precision variant calling from bacterial genome assembliesRyan R Wick, Louise M Judd, Timothy P Stinear, Ian R MonkAccess microbiology 2025, doi: 10.1099/acmi.0.001025.v2

Escherichia coli genomes

Plasmid-driven strategies for clone success in Escherichia coliSergio Arredondo-Alonso, Anna K Pöntinen, João A. Gama Rebecca A Gladstone et al.Nature communications 2025, doi: 10.1038/s41467-025-57940-1
DOI: 10.57841/casdc.0005602
title: 东北大学先进金属材料组织性能与基因工程团队钢铁数值型数据
DOI: 10.15468/9vcs8x
title: 1974 Biological Conservation. Isles of Scilly and Cornwall. Population survey of Grey seal (Halichoerus grypus).

description: Cornwall and the Isles of Scilly were explored for grey seal breeding locations during the 1973 breeding season. The primary aim of this study was to revisit these recorded breeding sites, locate new ones and obtain an up-to-date estimate of the population. a secondary objective was to tag as many pups as possible to investigate relationships between different populations of seals. The database includes abundance of seals found and location according to National Grid Reference
DOI: 10.15468/dl.ne8h92
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "Geometry POLYGON((112.78104 7.49023,128.68246 7.49023,128.68246 13.85419,112.78104 13.85419,112.78104 7.49023))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dugong dugon (Müller, 1776)"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003198-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29149031.v1
title: <b>Reimagining AI Integration in Higher Education through a Motivational-Cognitive Model for AI-Augmented Learning.</b>

description: This study introduces a new motivational-cognitive framework that examines how perceived intelligence and cognitive trust mediate the relationship between AI tool usage and AI-augmented learning. Drawing from expectancy-value theory and cognitive trust literature, we surveyed 356 university students across three developing countries (North Cyprus, the Democratic Republic of Congo and Nigeria).
DOI: 10.35097/bkb38p6juhxffxhp
title: The electrochemical Shono oxidation of N-formylpyrrolidin: Mechanistic insights from the computational ferrocene electrode model and cyclic voltammetry: SI

description: Optimized geometries of molecules and complexes, 
example of ORCA-input file,
detailed experimental data and description of experimental setup.
DOI: 10.15468/dl.6s678j
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron angiense J.J.Sm."
 ]
}

 The dataset includes 34 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003200-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ajfd24
title: Occurrence Download

description: A dataset containing 36817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36817 records from 429 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003196-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27918468
title: Intra and inter -decadal scale variability in kelp population structure reveal both stability and decline in a critical foundation species

description: Raw data for "Intra and inter -decadal scale variability in kelp population structure reveal both stability and decline in a critical foundation species"
DOI: 10.34808/y450-6773
title: OntoValidate: OntoNotes 5.0 NER validation dataset

description: OntoValidate dataset consists of 603 randomly chosen raw textsfrom the original OntoNote 5.0 dataset (3637 raw texts in total).
All raw texts are split into 13 subsets. Each subset was manuallyannotated with named entities by at least 10 people. Each annotator followed the official annotation guidelines (OntoNotes Named Entity Guidelines VERSION 14.0)that are distributed together with the OntoNotes 5.0 dataset. 
The OntoValidate dataset allows for a comparison of how different peopleunderstand the named entity recognition task. On the other hand, it also gave ussome insights about the precision of annotation guidelines itself.
Format
Each directory of the OntoValidate dataset represents a separate annotator.The first number in the directory name is the sequence number of the subset, the second isthe sequence number of the annotator. Each directory contains the JSON files that containthe annotations in spaCy JSON format. 
All annotations were created using the NER Text Annotator tool (https://tecoholic.github.io/ner-annotator/).
DOI: 10.15468/dl.2w7npn
title: Occurrence Download

description: A dataset containing 346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Morus alba",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 346 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018444-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/j2f-1vd-gzq
title: Ammonites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xm3-667-wd9
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l8b-sck-vsy
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mnk-ksa-61r
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0m8-tsr-2fc
title: †Palaeonucula W. Quenstedt, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6s7-xr4-mdn
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s1f-m9x-qt3
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wz6-lpr-1w0
title: Solidobalanus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3jp-mwt-fga
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l9z-y7q-08d
title: Odontaspis

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aec-jzp-c4f
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2mr-wve-avv
title: Elephas Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cwc-lpr-g50
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nkd-q8p-61x
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qdz-vc0-ntz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/azb-mhg-ftd
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/knz-z7w-n7j
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z6r-456-bhx
title: †Convexastrea d'Orbigny, 1849

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2bb-s6y-atk
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dcm-3n0-sxn
title: †Montastraea irradians (Milne Edwards & Haime, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16893429
title: India Patent Filing 2025
DOI: 10.5281/zenodo.16893430
title: India Patent Filing 2025
DOI: 10.3535/667-jaz-rj6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vsz-q21-wqs
title: †Trochocyathus armatus (Michelotti, 1838)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/adr-f2a-hzb
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ays-hcg-ebl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5zh-8bm-x9d
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f73-c1x-d7r
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/41n-7zm-dsc
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9ln-qyl-wbf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m72-s1d-xhe
title: Pholadomya G. B. Sowerby I, 1823

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c6w-8e0-mvp
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c8z-4er-22n
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.896krp
title: Occurrence Download

description: A dataset containing 1835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Pinus armandii"
 ]
}

 The dataset includes 1835 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018443-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/0wl-1ch-cmk
title: Gadiculus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d93-861-dxl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t8k-p71-zrj
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ype-l15-0a8
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dx1-enw-r1v
title: †Alveolina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k75-vnr-xdf
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dvn-f28-38d
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q2b-h23-1pw
title: Lopha Röding, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yg1-zx2-keg
title: Pholadomya G. B. Sowerby I, 1823

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k8m-mzb-3ra
title: †Hoernesia Laube, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.