cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6938270.v1
title: First microbial-archaeocyathan boundstone record from early Cambrian erratic cobbles in glacial diamictite deposits of Namibia (Dwyka Group, Carboniferous)

description: This study records the first occurrence of a lower Cambrian archaeocyathan fauna in limestone cobbles from Carboniferous glacigenic deposits of the Dwyka Group of the Aranos Basin in Namibia. Petrographic and microfacies analysis of 17 large, middle and standard thin sections reveals two distinctive limestone cobble facies: (a) bioclastic wackestone-packstone (hyoliths, trilobites, chancelloriids, crinoids and archaeocyaths); and (b) microbial-archaeocyathan boundstone dominated by calcimicrobes (<i>Epiphyton</i> and <i>Renalcis</i>), neomorphosed microbial crusts and crypto-fibrous calcite crusts around mainly regular archaeocyaths such as <i>Polycoscinus scutatus</i>, where encrusting ?sponges are accessory. The published stratigraphical and palaeocurrent data from the Dwyka Group, as well as published ages and the tectonothermal history of the underlying Nama Group, have been used in this study to establish the provenance of these lower Cambrian cobbles. The archaeocyaths from the Aranos Basin are: <i>Favilynthus contractus</i>, <i>Ajacicyathus aequitriens</i>, <i>Kisasacyathus subacutus</i>, <i>Plicocyathus</i> sp., <i>Erismacoscinus endutus</i>, <i>Erismacoscinus ganigobisensis</i> sp. nov., <i>Erismacoscinus</i> cf. <i>stephensoni</i>, <i>Polycoscinus scutatus</i>, <i>Chabakovicyathus</i> sp., Loculicyathidae gen. et sp. indet., <i>Dictyocyathus aranosensis</i> sp. nov., <i>Graphoscyphia</i> sp., <i>Archaeopharetra irregularis</i> and <i>Syringocnema favus</i>. The presence of <i>Syringocnema favus</i> and other species allows us to determine a precise upper Stage 3 or early-mid Botoman age for the erratic cobbles of the Dwyka Group from the Aranos Basin. The Namibian fauna reported here provides a key record in Cambrian palaeobiogeography based on archaeocyathan assemblages. The archaeocyath faunal assemblage from the Dwyka cobbles is diverse and has an analogous richness to allochthonous assemblages from Permo-Carboniferous glacigenic deposits of other localities in south-western Gondwana. Thus, the archaeocyath-bearing cobbles from the Dwyka Group of Namibia could provide a better understanding of the different palaeo-ice flow direction models of the Permo-Carboniferous glacial deposits in future palaeogeographical reconstructions of south-western Gondwana. http://zoobank.org/urn:lsid:zoobank.org:pub:0365EE4C-D7FA-4C09-89DF-27C9E1F55511
DOI: 10.6084/m9.figshare.6938249
title: circadian.tar.gz

description: Sequences are from a live animal (chicken) study where birds were raised under two photoperiod treatments - normal lighting versus extended lighting. After a three week entrainment and microbiota acquision phases, the microbiota were characterized and compared.
DOI: 10.6084/m9.figshare.6938249.v1
title: circadian.tar.gz

description: Sequences are from a live animal (chicken) study where birds were raised under two photoperiod treatments - normal lighting versus extended lighting. After a three week entrainment and microbiota acquision phases, the microbiota were characterized and compared.
DOI: 10.6084/m9.figshare.6938252.v2
title: JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states

description: The bromodomain and extra-terminal domain (BET) proteins are promising drug targets for cancer and immune diseases. However, BET inhibition effects have been studied more in the context of bromodomain-containing protein 4 (BRD4) than BRD2, and the BET protein association to histone H4-hyperacetylated chromatin is not understood at the genome-wide level. Here, we report transcription start site (TSS)-resolution integrative analyses of ChIP-seq and transcriptome profiles in human non-small cell lung cancer (NSCLC) cell line H23. We show that di-acetylation at K5 and K8 of histone H4 (H4K5acK8ac) co-localizes with H3K27ac and BRD2 in the majority of active enhancers and promoters, where BRD2 has a stronger association with H4K5acK8ac than H3K27ac. Although BET inhibition by JQ1 led to complete reduction of BRD2 binding to chromatin, only local changes of H4K5acK8ac levels were observed, suggesting that recruitment of BRD2 does not influence global histone H4 hyperacetylation levels. This finding supports a model in which recruitment of BET proteins via histone H4 hyperacetylation is predominant over hyperacetylation of histone H4 by BET protein-associated acetyltransferases. In addition, we found that a remarkable number of BRD2-bound genes, including MYC and its downstream target genes, were transcriptionally upregulated upon JQ1 treatment. Using BRD2-enriched sites and transcriptional activity analysis, we identified candidate transcription factors potentially involved in the JQ1 response in BRD2-dependent and -independent manner.
DOI: 10.6084/m9.figshare.6938252.v1
title: JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states

description: The bromodomain and extra-terminal domain (BET) proteins are promising drug targets for cancer and immune diseases. However, BET inhibition effects have been studied more in the context of bromodomain-containing protein 4 (BRD4) than BRD2, and the BET protein association to histone H4-hyperacetylated chromatin is not understood at the genome-wide level. Here, we report transcription start site (TSS)-resolution integrative analyses of ChIP-seq and transcriptome profiles in human non-small cell lung cancer (NSCLC) cell line H23. We show that di-acetylation at K5 and K8 of histone H4 (H4K5acK8ac) co-localizes with H3K27ac and BRD2 in the majority of active enhancers and promoters, where BRD2 has a stronger association with H4K5acK8ac than H3K27ac. Although BET inhibition by JQ1 led to complete reduction of BRD2 binding to chromatin, only local changes of H4K5acK8ac levels were observed, suggesting that recruitment of BRD2 does not influence global histone H4 hyperacetylation levels. This finding supports a model in which recruitment of BET proteins via histone H4 hyperacetylation is predominant over hyperacetylation of histone H4 by BET protein-associated acetyltransferases. In addition, we found that a remarkable number of BRD2-bound genes, including MYC and its downstream target genes, were transcriptionally upregulated upon JQ1 treatment. Using BRD2-enriched sites and transcriptional activity analysis, we identified candidate transcription factors potentially involved in the JQ1 response in BRD2-dependent and -independent manner.
DOI: 10.6084/m9.figshare.6938138
title: Teaching & Learning Team Text Mining Workshop

description: Materials from Voyant workshop conducted for library liaisons as part of TLT/Faculty Development/Digital Scholarship. Objectives:<br>-Analyze text with Voyant-Identify uses for text mining in instruction-Design accessible instruction for working with text<br>Associated Research Guide: http://researchguides.loyno.edu/text_workshop
DOI: 10.6084/m9.figshare.6938138.v1
title: Teaching & Learning Team Text Mining Workshop

description: Materials from Voyant workshop conducted for library liaisons as part of TLT/Faculty Development/Digital Scholarship. Objectives:<br>-Analyze text with Voyant-Identify uses for text mining in instruction-Design accessible instruction for working with text<br>Associated Research Guide: http://researchguides.loyno.edu/text_workshop
DOI: 10.6084/m9.figshare.6937736
title: stky_elk_fire.rdata

description: Data used to fit discrete-choice models testing the response of female elk (<i>Cervus canadensis</i>) to prescribed burns within Starkey Experimental Forest and Range, NE OR, USA. For further details see "Fire history influences large-herbivore behavior at circadian, seasonal, and successional scales", Spitz et al. 2018 in Ecological Applications. <br>The US Forest Service are currently in the process of making an expanded version of this dataset publicly available through the US Forest Service Research Data Archive (https://www.fs.usda.gov/rds/archive/, search "Starkey"). The expanded data set will include comprehensive telemetry data from this study and related research (spanning approximately 30 years and multiple ungulate species) as well as more detailed metadata and documentation. Release of these additional data is scheduled for November 2018.<br>
DOI: 10.6084/m9.figshare.6937736.v1
title: stky_elk_fire.rdata

description: Data used to fit discrete-choice models testing the response of female elk (<i>Cervus canadensis</i>) to prescribed burns within Starkey Experimental Forest and Range, NE OR, USA. For further details see "Fire history influences large-herbivore behavior at circadian, seasonal, and successional scales", Spitz et al. 2018 in Ecological Applications. <br>The US Forest Service are currently in the process of making an expanded version of this dataset publicly available through the US Forest Service Research Data Archive (https://www.fs.usda.gov/rds/archive/, search "Starkey"). The expanded data set will include comprehensive telemetry data from this study and related research (spanning approximately 30 years and multiple ungulate species) as well as more detailed metadata and documentation. Release of these additional data is scheduled for November 2018.<br>
DOI: 10.6084/m9.figshare.6936437
title: outcrop-point-cloud

description: Example Outcrop Point Cloud for Estimating Historical Shear Deformations.
DOI: 10.6084/m9.figshare.6936437.v1
title: outcrop-point-cloud

description: Example Outcrop Point Cloud for Estimating Historical Shear Deformations.
DOI: 10.6084/m9.figshare.6936389
title: SDB_Breast cancer database.sav

description: Sleep-dispordered breathing and breast cancer aggressiveness
DOI: 10.6084/m9.figshare.6936389.v1
title: SDB_Breast cancer database.sav

description: Sleep-dispordered breathing and breast cancer aggressiveness
DOI: 10.15128/r1gh93gz505
title: Controlling the ac Stark effect of RbCs with dc electric and magnetic fields [data and software]

description: We investigate the effects of static electric and magnetic fields on the differential ac Stark shifts for microwave transitions in ultracold bosonic 87Rb133Cs molecules, for light of wavelength λ=1064 nm. Near this wavelength we observe unexpected two-photon transitions that may cause trap loss. We measure the ac Stark effect in external magnetic and electric fields, using microwave spectroscopy of the first rotational transition. We quantify the isotropic and anisotropic parts of the molecular polarizability at this wavelength. We demonstrate that a modest electric field can decouple the nuclear spins from the rotational angular momentum, greatly simplifying the ac Stark effect. We use this simplification to control the ac Stark shift using the polarization angle of the trapping laser.
DOI: 10.6084/m9.figshare.6936227.v1
title: Station-based Growing Season Length values across Europe calculated using EEMD and ETCCDI methods

description: Growing Season Length (GSL) indices have been calculated at stations across Europe using both the ETCCDI definition and a definition based on an EEMD time-series decomposition using daily mean temperature values. These files contain values of the GSL at European stations, taken from the ECA&D repository, and at three sites (Central England Temperature [CET], Stockholm and St. Peterburg) which provide data, over a much longer period (1772 in the case of the CET series). These data are used in a paper published in the International Journal of Climatology (doi:10.1002/joc.5913).
DOI: 10.6084/m9.figshare.6936221
title: Calidad del sistema de información en salud: análisis comparativo de indicadores reportados México OCDE 2010-2016

description: <b><i>Cuadro Anexo 1. Indicadores Nunca reportado por México por Grupo</i></b><i></i> Indicadores Nunca reportados por México en el periodo 2010-2016, <b>calculo del porcentaje sobre el total de indicadores contemplados por la OCDE, en total y dentro de cada uno de los</b> 11 grupos definidos por OCDE 2016: 1) <i>Estado de salud</i>; 2) <i>Determinantes no médicos de la salud</i>; 3) <i>Recursos de la atención</i>; 4) <i>Migración de trabajadores en salud</i>; 5) <i>Uso de la atención en salud</i>; 6) <i>Indicadores de calidad de la atención</i>; 7) <i>Mercado farmacéutico</i>; 8) <i>Uso y recursos de cuidados prolongados</i>; 9) <i>Protección social</i>; 10) <i>Referencias demográficas</i>; y 11) <i>Referencias económicas</i>. <i> </i> <i>Cuadro Anexo 2. <b>Indicadores con defecto de calidad, México por Grupo</b></i> Se analizó <b>en cada indicador</b> <b>reportado,</b> el número y tipo de defecto <b>(problemas de calidad de la información)</b> identificado<b> en los reportes de la</b> <b><i>OECD Health Database</i></b>,<b> resumiendo los resultados como porcentaje de indicadores con defectos, en total y dentro de cada grupo y subgrupo de indicadores</b>. <b>Los defectos</b> <b>se clasifican siguiendo las indicaciones de</b> <b>la propia</b> OCDE: i) <i>interrupción o cambio de método en la serie de tiempo, </i><b>que dificulta comparabilidad</b>; ii) <i>valor estimado de otras fuentes, </i><b>dando lugar a valores aproximados</b>; iii) <i>diferente metodología <b>de cálculo</b> que <b>la propuesta por</b> OCDE</i>; y iv) <i>desviación de la definición original <b>del indicador</b></i>. <b>Para el cálculo de los porcentajes de indicadores con defectos de calidad identificados</b> en la información reportada por México, <b>distinguimos</b> 4 categorías para el numerador: <b>1.</b> Calidad óptima de información, se reporta sin defectos; <b>2</b>. Calidad óptima discontinuada, se reporta sin defectos pero de forma discontinua en el tiempo; <b>3.</b> Calidad subóptima, se ha reportado con al menos un defecto <b>de los</b> <b>identificados por OCDE</b>; 4. Calidad subóptima discontinuada , se ha reportado con al menos un defecto y de forma discontinua en el tiempo.
DOI: 10.6084/m9.figshare.6936221.v1
title: Calidad del sistema de información en salud: análisis comparativo de indicadores reportados México OCDE 2010-2016

description: <b><i>Cuadro Anexo 1. Indicadores Nunca reportado por México por Grupo</i></b><i></i> Indicadores Nunca reportados por México en el periodo 2010-2016, <b>calculo del porcentaje sobre el total de indicadores contemplados por la OCDE, en total y dentro de cada uno de los</b> 11 grupos definidos por OCDE 2016: 1) <i>Estado de salud</i>; 2) <i>Determinantes no médicos de la salud</i>; 3) <i>Recursos de la atención</i>; 4) <i>Migración de trabajadores en salud</i>; 5) <i>Uso de la atención en salud</i>; 6) <i>Indicadores de calidad de la atención</i>; 7) <i>Mercado farmacéutico</i>; 8) <i>Uso y recursos de cuidados prolongados</i>; 9) <i>Protección social</i>; 10) <i>Referencias demográficas</i>; y 11) <i>Referencias económicas</i>. <i> </i> <i>Cuadro Anexo 2. <b>Indicadores con defecto de calidad, México por Grupo</b></i> Se analizó <b>en cada indicador</b> <b>reportado,</b> el número y tipo de defecto <b>(problemas de calidad de la información)</b> identificado<b> en los reportes de la</b> <b><i>OECD Health Database</i></b>,<b> resumiendo los resultados como porcentaje de indicadores con defectos, en total y dentro de cada grupo y subgrupo de indicadores</b>. <b>Los defectos</b> <b>se clasifican siguiendo las indicaciones de</b> <b>la propia</b> OCDE: i) <i>interrupción o cambio de método en la serie de tiempo, </i><b>que dificulta comparabilidad</b>; ii) <i>valor estimado de otras fuentes, </i><b>dando lugar a valores aproximados</b>; iii) <i>diferente metodología <b>de cálculo</b> que <b>la propuesta por</b> OCDE</i>; y iv) <i>desviación de la definición original <b>del indicador</b></i>. <b>Para el cálculo de los porcentajes de indicadores con defectos de calidad identificados</b> en la información reportada por México, <b>distinguimos</b> 4 categorías para el numerador: <b>1.</b> Calidad óptima de información, se reporta sin defectos; <b>2</b>. Calidad óptima discontinuada, se reporta sin defectos pero de forma discontinua en el tiempo; <b>3.</b> Calidad subóptima, se ha reportado con al menos un defecto <b>de los</b> <b>identificados por OCDE</b>; 4. Calidad subóptima discontinuada , se ha reportado con al menos un defecto y de forma discontinua en el tiempo.
DOI: 10.6084/m9.figshare.6936158.v1
title: SolarPanels_California

description: Data set including test, training and validation images and labels from aerial images from California, taken from the data set from Bradbury, 2016.
DOI: 10.6084/m9.figshare.6936053.v1
title: test_images_AcMüDüHo.npy

description: Data set including test, training and validation images and labels from the German region of North-Rhine-Westphalia.
DOI: 10.6084/m9.figshare.6936038
title: Laboratory observations on predator–prey interactions between the bearded fireworm (<i>Hermodice carunculata</i>) and Mediterranean benthic invertebrates

description: The bearded fireworm (<i>Hermodice carunculata</i>) is an amphinomid polychaete with a circumtropical Atlantic-Mediterranean distribution. In the Mediterranean Sea, very little information is available on its feeding habits and ecological functions. Here, its increasing abundance and the ability to actively prey on a keystone sea urchin species suggest potential repercussions for the structure and functioning of benthic communities. We performed laboratory feeding experiments to investigate interactions between Mediterranean <i>H. carunculata</i> and 12 species of sessile or sedentary invertebrates. <i>H. carunculata</i> preyed efficiently on 9 of the species offered. In particular, active predation of a polychaete upon nudibranchs, colonial ascidians and chitons was reported for the first time. Fireworms’ predatory ability may be due to a combination of several ‘weapons’ (large size, motility, stinging chaetae and eversible, sucking pharynx) which seems to be unique among marine worms, and could enable <i>H. carunculata</i> to persist also after radical changes in prey community composition and withstand selective pressures associated with ongoing environmental changes.
DOI: 10.6084/m9.figshare.6936038.v1
title: Laboratory observations on predator–prey interactions between the bearded fireworm (<i>Hermodice carunculata</i>) and Mediterranean benthic invertebrates

description: The bearded fireworm (<i>Hermodice carunculata</i>) is an amphinomid polychaete with a circumtropical Atlantic-Mediterranean distribution. In the Mediterranean Sea, very little information is available on its feeding habits and ecological functions. Here, its increasing abundance and the ability to actively prey on a keystone sea urchin species suggest potential repercussions for the structure and functioning of benthic communities. We performed laboratory feeding experiments to investigate interactions between Mediterranean <i>H. carunculata</i> and 12 species of sessile or sedentary invertebrates. <i>H. carunculata</i> preyed efficiently on 9 of the species offered. In particular, active predation of a polychaete upon nudibranchs, colonial ascidians and chitons was reported for the first time. Fireworms’ predatory ability may be due to a combination of several ‘weapons’ (large size, motility, stinging chaetae and eversible, sucking pharynx) which seems to be unique among marine worms, and could enable <i>H. carunculata</i> to persist also after radical changes in prey community composition and withstand selective pressures associated with ongoing environmental changes.
DOI: 10.6084/m9.figshare.6935882
title: Decision Analysis to Support Agriculture for Nutrition

description: Research supporting development decisions related to agriculture for nutrition often fails to consider the range of ecological, socioeconomic, cultural and political factors that influence agriculture. This often limits decision makers’ ability to rationally decide on the best course of action in developing and implementing agriculture for nutrition interventions. The basic steps in the Decision Analysis process aim to address both why and how decisions are formulated and decision-relevant factors are measured. This approach follows the basic premise that if something has an effect, this effect must be observable and if it is observable, it must be measurable. Through the stochastic and iterative modelling process Decision Analysis can supply decision makers with information about probable impact pathways of agricultural interventions and thereby help them prioritize for the best nutrition outcomes.
DOI: 10.6084/m9.figshare.6935867
title: ELP_data.zip

description: This file contains the data recorded during the study "Age-related changes in spinal and lower limb kinematics and trunk muscle activity during gait"<br>Once opened, the .zip file reveals one individual folder per subject. Each folders contains .sig files (EMG data) and .qtm files (kinematic data). <br>
DOI: 10.6084/m9.figshare.6935864
title: Additional file1

description: A videotaped example of performing in the On-Site setting Level 1 4 targets
DOI: 10.6084/m9.figshare.6935864.v2
title: Additional file1

description: A videotaped example of performing in the On-Site setting Level 1 4 targets
DOI: 10.6084/m9.figshare.6935810
title: Modelling Extremes of the Johannesburg Stock Exchange Industrial Index (J520) using the Generalised Pareto Distribution.

description: Financial Index for the Johannesburg Stock Exchange Industrial Index (J520) period 1995 to 2018
DOI: 10.6084/m9.figshare.6935792
title: Pressure driven flow (H2O into dry) - sample IGSN: IEETV0003 intact

description: - High speed neutron tomography (1 minute) of imbibition process into deformed sample- Water Front detected every 2 minutes- Flow speed calculated from distance maps (values in µm/s)
DOI: 10.6084/m9.figshare.6935792.v1
title: Pressure driven flow (H2O into dry) - sample IEETV0003 intact

description: - High speed neutron tomography (1 minute) of imbibition process into deformed sample
DOI: 10.6084/m9.figshare.6935792.v2
title: Pressure driven flow (H2O into dry) - sample IEETV0003 intact

description: - High speed neutron tomography (1 minute) of imbibition process into deformed sample
DOI: 10.6084/m9.figshare.6935792.v3
title: Pressure driven flow (H2O into dry) - sample IEETV0003 intact

description: - High speed neutron tomography (1 minute) of imbibition process into deformed sample- Water Front detected every 2 minutes- Flow speed calculated from distance maps
DOI: 10.6084/m9.figshare.6935792.v4
title: Pressure driven flow (H2O into dry) - sample IGSN: IEETV0003 intact

description: - High speed neutron tomography (1 minute) of imbibition process into deformed sample- Water Front detected every 2 minutes- Flow speed calculated from distance maps (values in µm/s)
DOI: 10.6084/m9.figshare.6935708.v2
title: 2 DoF saddle-center local dynamics

description: Local phase space structure about a saddle-center fixed point