cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23502372.v3
title: ORDerly supplementary datasets

description: Supplementary datasets used in ORDerly (i.e. the non-benchmark datasets)Condition prediction datasets: Contains parquet files for each of the four flavours of ORDerly-condition datasets that we used in the ORDerly paper. Condition prediction datasets config: Contains the .log and .json files showing the parameters used in cleaning and the impact on dataset size after each cleaning step.Transformer datasets: Contains plain txt files with the six transformer-ready datasets that were used for training/testing with Molecular Transformer. Non uspto data: Contains the datasets created with ORDerly from non-USPTO data in ORD. These datasets were used as test sets for forward prediction and retrosynthesis prediction.Preprint: https://chemrxiv.org/engage/chemrxiv/article-details/64ca5d3e4a3f7d0c0d78ca42Neurips workshop paper: https://openreview.net/forum?id=R8FQMsECISCode: https://github.com/sustainable-processes/orderlyThe ORDerly benchmark datasets can be found here: https://figshare.com/articles/dataset/ORDerly_chemical_reactions_condition_benchmarks/23298467Please feel free to contact me, Daniel Wigh, at dsw46@cam.ac.uk in case of any questions.
DOI: 10.6084/m9.figshare.24274780.v3
title: Annealed CoCrNi

description: Four annealed CoCrNi APT demo data along &lt;002&gt; and &lt;111&gt;. The relevant rrng files are also provided.
DOI: 10.17632/fky6dkhmb3
title: Data S1: Technical drawings of adaptive light-sheet microscope, computational tools for image analysis, and dynamic cellular atlas of mouse development

description: This data file contains the following resources: 1) A complete blueprint of the adaptive multi-view light-sheet microscope for mouse imaging, including technical drawings of the microscope’s 77 types of custom mechanical components, assembly illustrations for the microscope’s 28 types of multi-part assemblies, and parts list of all custom and commercial mechanical microscope components. 2) Computational tools for image analysis, including software modules for KLB image compression, block-matching multi-view/time-lapse image registration, multi-view image deconvolution, division detection with a convolutional neural network, TGMM 2.0 cell tracking with a machine-learning module, statistical vector flow (SVF) analysis, interactive 4D visualization of SVF databases, spatiotemporal registration of multiple embryos with TARDIS, and average embryo database query using external label masks. 3) Dynamic cellular atlas of mouse development, including databases of cell tracks with tissue annotations for four embryos (TARDIS embryos A-D), an interactive visualization of annotated cell tracks for TARDIS embryo A, database of cell divisions for TARDIS embryo A, landmark annotations in the average embryo, TARDIS statistical fate map (statistical integration of four embryos), the average embryo (statistical integration of four embryos), database of tissue morphodynamics for TARDIS embryo A, and the TARDIS database of tissue morphodynamics (statistical integration of four embryos).
DOI: 10.17632/ts8tgpmxkf
title: DETERMINANTS OF FOREIGN DIRECT INVESTMENT IN SOUTH ASIAN COUNTRIES: A SYSTEMATIC REVIEW OF THE LITERATURE

description: This paper aims to study the Literature relating to determinants of foreign direct investment particularly for South Asian Countries, by identifying empirical studies focused on the selected theme. This paper employs qualitative research method through a systematic review of literature, which looks at the terms, ‘Foreign Direct Investment determinants’ and ‘South Asia’, aimed at studying the factors influencing the Foreign Direct Investment inflows to South Asian countries. For this purpose, databases like Science Direct, Sage Journals, Emerald Insight and Search Engine Google Scholar were checked with. This paper presents a broad framework on the most recent and relevant research articles on Foreign Direct Investment Determinants of South Asia.
DOI: 10.6084/m9.figshare.28826882.v1
title: Interview Mi PA2.docx

description: This is the interview transcription
DOI: 10.6084/m9.figshare.4806496.v2
title: 100% Renewable Power Generation in 2040: The Case of Java-Bali Region, Indonesia

description: A sustainable and dependable electricity is needed to continue the economic significance of Java-Bali (JB) region in the future. This paper summarizes the renewable resources in JB region from literatures available in peer-reviewed journals, publicly available government documents, and international agencies reports, then projects it to meet current and 2040 system stability.Renewable energy resources in the region are identified in the form of geothermal, hydropower, biomass, solar PV, and wind energy. If it is available by now, renewable energy resources can reach 2016 system stability, but extensive increase in solar PV capacity and efficiency measures in all sector is needed to meet 2040 demand. Political commitment from national to subnational level is also needed for the transition to happen.<br>The datasets for the graphs and tables are available in the supplied Excel file.
DOI: 10.6084/m9.figshare.7825748.v1
title: SI Methods and Tables from Evidence for non-colligative function of small cryoprotectants in a freeze-tolerant insect

description: Additional details on methods and results of statistical tests
DOI: 10.6084/m9.figshare.14035829.v2
title: SUDDEN INFANT DEATH SYNDROME

description: Sudden infant death syndrome (SIDS) is one of the primary causes of death of infants in the first year of life. According to the WHO's data, the global infant mortality rate is 0.64–2 per 1,000 live-born children. Molecular and cellular aspects of SIDS development have not been identified so far. The purpose of this paper is to verify and analyze the expression of melatonin 1 and 2 receptors, serotonin (as a melatonin precursor), and CD34 molecules (as hematopoietic and endothelial markers of cardiovascular damage) in the medulla, heart, and aorta in infants who died from SIDS. An immunohistochemical method was used to investigate samples of medulla, heart, and aorta tissues of infants 3 to 9 months of age who died from SIDS. The control group included children who died from accidents. It has been shown that the expression of melatonin receptors as well as serotonin and CD34 angiogenesis markers in tissues of the medulla, heart, and aorta of infants who died from SIDS is statistically lower as compared with their expression in the same tissues in children who died from accidents. The obtained data allows to clarify in detail the role of melatonin and such signaling molecules as serotonin and CD34 in SIDS pathogenesis, which can open new prospects for devising novel methods for predictive diagnosis of development and targeted prophylaxis of SIDS.
DOI: 10.6084/m9.figshare.15032169.v4
title: Field bathymetry data collected from 24/01/2017 to 23/02/2017 at Tamandaré - Pernambuco, Brazil

description: The bathymetric surveys were conducted during January and February 2017 using a single-beam echo sounder (SonarMite BT-TM System). Survey tracks totalled 200 km, corresponding to a 22.5-km<sup>2</sup> area. All surveys were conducted on high tide time to allow maximum water depth.<br>Duplicated points were identified and deleted, and a correction of transducer depth was performed. Tidal height correction was performed based on tide charts provided by the Brazilian Hydrographic Authority for the closest harbour, Suape–Imbituba vertical datum—reference level RN5-DHN (estimated error = 0.1 m). Tide data from these tables were merged and interpolated using spline method to fit the bathymetric data to a tide value of 0.0 m. <br><br>
DOI: 10.6084/m9.figshare.17468546.v2
title: Data availability-BIOCOMPATIBILITY.xlsx

description: Two ratios of HDDMA/TEGDMA resin were researched: exp-1 (70/30 wt%) and exp-2 (50/50 wt%) with two <i>bis</i>-GMA resin control groups (<i>bis</i>-GMA/MMA and <i>bis</i>-GMA/TEGDMA resins, both 70/30 wt%). E-glass fibers were embedded into the resins to prepare FRCs specimens. Biocompatibility was assessed for cytotoviability and biofilm formation with <i>Streptococcus mutans</i>, <i>Streptococcus sanguinis</i>, <i>Enterococcus faecalis, </i>and<i> Candida albicans</i>. Biomechanical properties were evaluated for flexural strength and hardness (24 h, water storage 1 and 28 days), water sorption (1, 7, 14, and 28 days), contact angle, and surface roughness.
DOI: 10.6084/m9.figshare.26142709.v1
title: Malaria Fanteakwa South_13012024.xlsx

description: Effects of artisanal mining activities on the <i>Plasmodium falciparum</i> load: the case of asymptomatic people in the Fanteakwa South district of Ghana
DOI: 10.6084/m9.figshare.5231053.v3
title: MAMEM Phase I Dataset - A dataset for multimodal human-computer interaction using biosignals and eye tracking information

description: This dataset combines multimodal biosignals and eye tracking information gathered under a human-computer interaction framework. The dataset was developed in the vein of the MAMEM project that aims to endow people with motor disabilities with the ability to edit and author multimedia content through mental commands and gaze activity. The dataset includes EEG, eye-tracking, and physiological (GSR and Heart rate) signals along with demographic, clinical and behavioral data collected from 36 individuals (18 able-bodied and 18 motor-impaired). Data were collected during the interaction with specifically designed interface for web browsing and multimedia content manipulation and during imaginary movement tasks. Alongside these data we also include evaluation reports both from the subjects and the experimenters as far as the experimental procedure and collected dataset are concerned. We believe that the presented dataset will contribute towards the development and evaluation of modern human-computer interaction systems that would foster the integration of people with severe motor impairments back into society.<br>Please use the following citation: Nikolopoulos, Spiros, Georgiadis, Kostas, Kalaganis, Fotis, Liaros, Georgios, Lazarou, Ioulietta, Adam, Katerina, Papazoglou – Chalikias, Anastasios, Chatzilari, Elisavet , Oikonomou, Vangelis P., Petrantonakis, Panagiotis C., Kompatsiaris, Ioannis, Kumar, Chandan, Menges, Raphael, Staab, Steffen, Müller, Daniel, Sengupta, Korok, Bostantjopoulou, Sevasti, Zoe, Katsarou , Zeilig, Gabi, Plotnik, Meir, Gottlieb, Amihai, Fountoukidou, Sofia, Ham, Jaap, Athanasiou, Dimitrios, Mariakaki, Agnes, Comanducci, Dario, Sabatini, Edoardo, Nistico, Walter & Plank, Markus. (2017). The MAMEM Project - A dataset for multimodal human-computer interaction using biosignals and eye tracking information. Zenodo. http://doi.org/10.5281/zenodo.834154<br>Read/analyze using the following software:https://github.com/MAMEM/eeg-processing-toolbox<br><br>
DOI: 10.6084/m9.figshare.7734767.v2
title: A multimodal dataset of human gait at different walking speeds established on healthy and injured free adult participants

description: Human motion capture is used in various fields to analyse, understand and reproduce the diversity of movements that are required during daily-life activities. The proposed dataset of human gait has been established on 50 adults injury-free for lower and upper extremities in the most recent six months, with no lower and upper extremity surgery in the last two years. Participants were asked to walk on a straight level walkway at 5 speeds during one unique session: 0–0.4 m.s-1, 0.4–0.8 m.s-1, 0.8–1.2 m.s-1, self-selected spontaneous and fast speeds. Three dimensional trajectories of 52 reflective markers spread over the whole body, 3D ground reaction forces and moment, and electromyographic signals were simultaneously recorded. For each participants, a minimum of 3 trials per condition have been made available in the dataset for a total of 1.145 trials. This dataset could lead to increase the sample size of similar datasets, analyse the effect of walking speed on gait, or conduce unusual analysis of gait thanks to the full body markerset used. <br>
DOI: 10.6084/m9.figshare.11605398.v1
title: Functional trait model estimates for 56 understory plant species of coastal Douglas-fir forests in western Oregon

description: Continuous and categorical trait data for 56 understory plant species of coastal Douglas-fir forests in western Oregon analyzed in Burton, J.I., Perakis, S.S., Brooks, J.R. & Puettmann, K.J. (2020) Trait integration and functional differentiation among co-existing plant species. American Journal of Botany, 107, 628-638. <br>Traits were estimated using models developed in Burton, J. I., Perakis, S. S., McKenzie, S. C., Lawrence, C. E. & Puettmann, K. J. (2017) Intraspecific variability and reaction norms of forest understorey plant species traits. Functional Ecology, 31, 1881-1893. These estimates control for intraspecific trait variability associated with variation in environmental conditions (i.e., light, soil N, moisture, associated vegetation).
DOI: 10.17632/3vhvyzyt7n
title: N-body potential for simulation of α and β phases of zirconium

description: The supplemetary materials to the article "N-body potential for simulation of α and β phases of zirconium"
DOI: 10.6084/m9.figshare.1164585_d4
title: REDOS_1.0_1994.tar.bz2: An ocean reanalysis dataset of the South China Sea (REDOS) in 1994

description: An ocean reanalysis dataset of the South China Sea (REDOS) in 1994
DOI: 10.6084/m9.figshare.13487676.v1
title: Data on termite diversity, abondance and varietal resistance in maize fields in the Republic of Benin

description: This is data on the diversity and abundance of termites collected in 60 maize fields in 30 villages (2 fields surveyed per village) across 5 agro-ecological zones in the Republic of Benin. Data were collected between August 2018 and September 2019. The data also presented the screening of resistance of five local maize varieties (Elèkpèrè, Igbado tchakpa, Forkui , Agbadé kouin winiwini, and Korga) against termite attacks. <br>
DOI: 10.6084/m9.figshare.19470185.v1
title: IoT

description: Materi ke 2
DOI: 10.6084/m9.figshare.28512767.v1
title: Global Yearly Leaf Area Index (LAI) in 2000-2020

description: Leaf Area Index (LAI) is a critical parameter in ecology and agriculture that represents the total one-sided green leaf area per unit ground surface area. It is typically expressed in square meters of leaf area per square meter of ground area (m²/m²). LAI is an essential indicator for understanding plant canopy structure, photosynthetic capacity, and the overall health of vegetation.The product integrates three LAI datasets—NOAA CDR, MODIS LAI, and ERA5—using the inverse distance weighted error theory to generate a global 1-kilometer annual LAI product for the period 2000-2020.
DOI: 10.6084/m9.figshare.4754302.v1
title: Table S2 from How (much) do flowers vary?: unbalanced disparity among flower functional modules and a mosaic pattern of morphospace occupation in the order Ericales

description: Dataset
DOI: 10.17632/5vb27x4fxk
title: Datasets and R code for Bottini et al. (2022) Effects of methylmercury and food stress on migratory activity in song sparrows, Melospiza melodia

description: This folder contains all the datasets and R code needed to reproduce the analysis of manuscript from Bottini et al. 2022 “Effects of methylmercury and food stress on migratory activity in song sparrows, Melospiza melodia”, published in Hormones and Behavior journal.
Link to the article is provided below.
Article's Highlights: 
 • Exposure to contaminants and/or stressors can hinder songbirds' migration.
 • Carry-over effects of MeHg exposure and food stress on song sparrows were assessed.
 • Nocturnal activity increased in MeHg-exposed birds and varied with food stress.
 • Treatments and time affected corticosterone and body mass, but not thyroxine.
 • Fecal corticosterone was positively correlated with nocturnal activity.
DOI: 10.25392/leicester.data.9860807.v1
title: Data for Kidney Failure Risk Equation, Major et al PLOS Medicine 2019

description: Data used to perform analysis for manuscript "The Kidney Failure Risk Equation for prediction of end stage renal disease in UK primary care: an external validation and clinical impact projection cohort study" (Major et al, PLOS Medicine 2019)
DOI: 10.6084/m9.figshare.25036706.v1
title: The Telomere-to-Telomere Gap-Free Reference Genome of Horsegram (<i>Macrotyloma uniflorum</i>)

description: The Telomere-to-Telomere Gap-Free Reference Genome of Horsegram (<i>Macrotyloma uniflorum</i>)
DOI: 10.6084/m9.figshare.5808405.v1
title: Figure 7b.xlsx

description: Data for Figure 7b.
DOI: 10.6084/m9.figshare.6797951.v1
title: Supplementary Material for: Repeat Thoracentesis in Hepatic Hydrothorax and Non-Hepatic Hydrothorax Effusions: A Case-Control Study

description: <b><i>Background:</i></b> Repeat thoracentesis for symptom control is offered to patients with refractory hepatic hydrothorax (HH) but the risk profile for this management strategy remains unclear. <b><i>Objectives:</i></b> This study aimed to compare complication frequency and nature during repeat thoracentesis in patients with and without HH. <b><i>Methods:</i></b> Complication rates in patients undergoing repeat thoracentesis for symptom relief was compared between patients with HH and a control group (non-HH group) at a single center from 2010 to 2015. Records were reviewed for demographics, laboratory values, number of thoracentesis, and associated complications with each procedure. <b><i>Results:</i></b> 82 patients with HH (274 thoracenteses) and 100 control patients (188 thoracenteses) were included. A complication was noted in 17/462 (0.03%) procedures in the entire cohort. There was a higher overall complication rate with repeat thoracentesis in the HH group (8 vs. 0%, <i>p</i> = 0.016, 95% CI = 1.5–14.6). In the HH group, the cumulative risk of complications increased with sequential thoracenteses; a complication occurring in the preceding intervention was the strongest predictor for subsequent complication (OR = 17.1, <i>p</i> = 0.0013) and more than 1 previous complication was associated with a 15-fold increased risk of a subsequent complication (<i>p</i> &lt; 0.001). In multivariate analysis within the HH group, the Model for End-Stage Liver Disease (MELD) score was an independent predictor of hemothorax (OR = 1.19, 95% CI = 1.03–1.36, <i>p</i> = 0.012). <b><i>Conclusions:</i></b> Repeat thoracentesis is an overall low-risk procedure, although a higher complication rate is observed in HH compared with non-HH patients. The presence of a previous complication significantly increases the risk of future complications in the HH population.
DOI: 10.6084/m9.figshare.8107895.v1
title: data

description: Input data for the SysMalVac project.
DOI: 10.17632/7fnfbtsgrn
title: Improved CUDA programs for GPU computing of Swendsen–Wang multi-cluster spin flip algorithm: 2D and 3D Ising, Potts, and XY models

description: Abstract We present new versions of sample CUDA programs for the GPU computing of the Swendsen–Wang multi-cluster spin flip algorithm. In this update, we add the method of GPU-based cluster-labeling algorithm without the use of conventional iteration (Komura, 2015) to those programs. For high-precision calculations, we also add a random-number generator in the cuRAND library. Moreover, we fix several bugs and remove the extra usage of shared memory in the kernel functions. Title of program: SWspin_v2_0 Catalogue Id: AERM_v2_0 Nature of problem Monte Carlo simulation of classical spin systems. Ising, q-state Potts model, and the classical XY model are treated for both two-dimensional and three-dimensional lattices. Versions of this program held in the CPC repository in Mendeley Data AERM_v1_0; SWspin; 10.1016/j.cpc.2013.10.029 AERM_v2_0; SWspin_v2_0; 10.1016/j.cpc.2015.10.003 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/gy4hfbm9x9
title: Dataset for Role of Autoconversion Parameterization in Coupled Climate Model for Simulating Monsoon Subseasonal Oscillations

description: The datasets are obtained through the model simulation of CFSv2. The data are processed by using different analytical softwares e.g., Ferret, NCL, CDO and GrADS. 
1. CFS stands for NCEP Climate Forecast System Model.
2. t126 stands for resolution of 100 km datasets.
3. t382 stands for resolution of ~38 km datasets
4. ppt stands for precipitation files
5. olr stands for outgoing longwave radiation
6. cloud data contains cloud fraction
7. omega data contains the pressure vertical velocity.
8. active and break composite data are provided. They are calculated applying time average after selecting active and break spell.
DOI: 10.17632/nv4hdnvhzd
title: In silico FRET from simulated dye dynamics

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract Single molecule fluorescence resonance energy transfer (smFRET) experiments probe molecular distances on the nanometer scale. In such experiments, distances are recorded from FRET transfer efficiencies via the Förster formula, E = 1 / ( 1 + ( R / R 0 ) 6 ) . The energy transfer however also depends on the mutual orientation of the two dyes used as distance reporter. Since this information is typically inaccessible in FRET experiments, one has to rely on approximations, which reduce the accura... Title of program: md2fret Catalogue Id: AENV_v1_0 Nature of problem Simulation and interpretation of single molecule FRET experiments. Versions of this program held in the CPC repository in Mendeley Data AENV_v1_0; md2fret; 10.1016/j.cpc.2012.10.018
DOI: 10.17632/x7h2jt4dbm
title: Data: Seasonal activity patterns of a Kalahari mammal community: trade-offs between environmental heat load and predation pressure

description: Mammals in arid zones have to trade-off thermal stress, predation pressure, and time spent foraging in a complex thermal landscape. We quantified the relationship between the environmental heat load and activity of a mammal community in the hot, arid Kalahari Desert. We deployed miniature black globe thermometers within the existing Snapshot Safari camera trap grid on Tswalu Kalahari Reserve, South Africa. Using the camera traps to record species activity throughout the 24-hour cycle we quantified changes in the activity patterns of mammal species in relation to heat loads in their local environment. We compared the heat load during which species were active between two sites with differing predator guilds. In the presence of lion (Panthera leo) prey species were generally active under significantly higher heat loads, especially during the hot and dry spring. We suggest that increased foraging under high heat loads highlights the need to meet nutritional requirements while avoiding nocturnal activity when predatory pressures are high. Such a trade-off may become increasingly costly under the hotter and drier conditions predicted to become more prevalent as a result of climate change within the arid and semi-arid regions of southern Africa.
DOI: 10.17632/xfwfyv74pr
title: Behavioural measures during PMd and A5 cooling

description: This file contains behavioural measures during PMd and A5 cooling in two macaque monkeys.
DOI: 10.17632/ycxy9jn87r
title: Microtopography-mediated hydrologic environment controls organic sulfur mineralization in soils of sub-tropical monsoon climate

description: Research data is related to: Microtopography-mediated hydrologic environment controls organic sulfur mineralization in soils of sub-tropical monsoon climate