cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26598362.v1
title: Additional file 6 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 6: Supplemental Table 6. Correlations between clinical and pathological traits and gene modules in the male and female gene co-expression networks in the PHG of the MSBB cohort and the PFC of the ROSMAP cohort. Spearman’s rank correlation was used. Nominal correlation p values and corrected p values by the Benjamini–Hochberg’s method were reported for A) female and B) male gene co-expression network modules in the PHG brain region from the MSBB cohort, as well as C) female and D) male gene co-expression network modules in the PFC brain region from the ROSMAP cohort.
DOI: 10.6084/m9.figshare.26598374.v1
title: Additional file 10 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 10: Supplemental Table 10. The top network drivers of female AD. Candidate genes of the top AD-associated modules in the gene network of the PHG from the female AD subjects in the MSBB cohort and in the gene network of the PFC from the female AD subjects in the ROSMAP cohort. Genes that met any of three selection criteria were selected and further rank-ordered based on the strength of association with AD. The rank order was calculated based on multiple p values calculated from module-trait correlation and module-DEG enrichment analyses with a candidate score which ranges from 0 to 1. Number of the published literature on each specific candidate gene was also shown.
DOI: 10.6084/m9.figshare.26598368
title: Additional file 8 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 8: Supplemental Table 8. Module hubs genes in the male and female gene co-expression networks in the PHG of MSBB cohort and the PFC of the ROSMAP cohort. A) female and B) male AD subjects in the PHG of the MSBB cohort. C) female and D) male AD subjects in the ROSMAP cohort.
DOI: 10.6084/m9.figshare.26598353.v1
title: Additional file 3 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 3: Supplemental Table 3. Jonckheere Trend analysis to identify genes correlated with each clinical trait and APOE genotype in each sex in the PHG of MSBB and the PFC of ROSMAP. Multiple tests were adjusted using the Benjamini–Hochberg’s FDR method. Differences in trend between males and females were assessed as well. A-B) the PHG of MSBB cohort and C-D) the PFC of ROSMAP cohort. E) Intersection among the Jonckheere based DTG signatures in the PHG of the MSBB cohort. F) Intersection of the known AD risk genes and the Jonckheere based DTG signatures in the PHG of the MSBB cohort.
DOI: 10.6084/m9.figshare.26598389.v1
title: Additional file 15 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 15: Supplemental Table 15. Number of differentially expressed genesin DAM and HAM induced by LRP10 Overexpression. In each microglia subtype, differential expression was performed on four comparisons including Female LRP10 OE E4FAD versus Female E4FAD ctrl, Female LRP10 OE E3FAD versus Female E3FAD ctrl, Male LRP10 OE E4FAD versus Male E4FAD ctrl, and Male LRP10 OE E3FAD versus Male E3FAD ctrl.
DOI: 10.6084/m9.figshare.26598350
title: Additional file 2 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 2: Supplemental Table 2. Differential expression analysis of the comparisons of various groups as the combinations of sex, disease status, and APOE genotype. Multiple tests were adjusted using the Benjamini–Hochberg’sFDR method. Genes with an FDR adjusted p value less than 0.05 and fold changegreater than 1.2 were considered significant. A) Summary of the numbers of DEGsfrom different comparisons in different brain regionsreported in 2B and 2C. B) The DEGs in the PHG of the MSBB cohort from the comparisons of sex specific and APOE genotype specific AD versus control subjects as well as disease status and APOE genotype specific males versus females. C) The DEGs in the PFC from the ROSMAP cohort from the comparisons of sex and APOE genotype specific AD versus control subjects as well as disease status and APOE genotype specific males versus females.
DOI: 10.6084/m9.figshare.26598356
title: Additional file 4 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 4: Supplemental Table 4. Module assignment for the genes in the male and female gene coexpression networks in the PHG and PFC brain regions. A-B) the PHG of MSBB cohort and C-D) the PFC of ROSMAP cohort.
DOI: 10.6084/m9.figshare.26598359.v1
title: Additional file 5 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 5: Supplemental Table 5. The top ranked modules and their enriched pathways in the male and female gene co-expression networks in the PHG and PFC brain regions. Fold enrichment and Fisher’s Exact Test based enrichment significance were reported. The top ranked 100 modules from A) female and B) male gene co-expression networks in the PHG brain regions, as well as the top ranked 50 modules from C) female and D) male gene co-expression networks in the PFC from the ROSMAP cohort.
DOI: 10.6084/m9.figshare.26598365
title: Additional file 7 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 7: Supplemental Table 7. Cell type specificity of gene modules in the male and female gene co-expression networks in the PHG of MSBB cohort and the PFC of the ROSMAP cohort. A) female and B) male AD subjects in the PHG of the MSBB cohort. C) female and D) male AD subjects in the ROSMAP cohort.
DOI: 10.6084/m9.figshare.26598374
title: Additional file 10 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 10: Supplemental Table 10. The top network drivers of female AD. Candidate genes of the top AD-associated modules in the gene network of the PHG from the female AD subjects in the MSBB cohort and in the gene network of the PFC from the female AD subjects in the ROSMAP cohort. Genes that met any of three selection criteria were selected and further rank-ordered based on the strength of association with AD. The rank order was calculated based on multiple p values calculated from module-trait correlation and module-DEG enrichment analyses with a candidate score which ranges from 0 to 1. Number of the published literature on each specific candidate gene was also shown.
DOI: 10.6084/m9.figshare.26598389
title: Additional file 15 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 15: Supplemental Table 15. Number of differentially expressed genesin DAM and HAM induced by LRP10 Overexpression. In each microglia subtype, differential expression was performed on four comparisons including Female LRP10 OE E4FAD versus Female E4FAD ctrl, Female LRP10 OE E3FAD versus Female E3FAD ctrl, Male LRP10 OE E4FAD versus Male E4FAD ctrl, and Male LRP10 OE E3FAD versus Male E3FAD ctrl.
DOI: 10.6084/m9.figshare.26598347
title: Additional file 1 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 1: Supplemental Table 1. Sample information for the human brain cohorts. The information of individual samples in the ROSMAPMSBBand cohorts was provided including sex, ApoE genotype, age of death, Braak score, plaque burdenor cognitive diagnostic score, CDRor MMSE, PMI and diagnosis based on CERAD and Braak scores. C) Summary statistics for various sex-ApoE-genotype subgroups.
DOI: 10.6084/m9.figshare.26598347.v1
title: Additional file 1 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 1: Supplemental Table 1. Sample information for the human brain cohorts. The information of individual samples in the ROSMAPMSBBand cohorts was provided including sex, ApoE genotype, age of death, Braak score, plaque burdenor cognitive diagnostic score, CDRor MMSE, PMI and diagnosis based on CERAD and Braak scores. C) Summary statistics for various sex-ApoE-genotype subgroups.
DOI: 10.6084/m9.figshare.26598368.v1
title: Additional file 8 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 8: Supplemental Table 8. Module hubs genes in the male and female gene co-expression networks in the PHG of MSBB cohort and the PFC of the ROSMAP cohort. A) female and B) male AD subjects in the PHG of the MSBB cohort. C) female and D) male AD subjects in the ROSMAP cohort.
DOI: 10.6084/m9.figshare.26598365.v1
title: Additional file 7 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 7: Supplemental Table 7. Cell type specificity of gene modules in the male and female gene co-expression networks in the PHG of MSBB cohort and the PFC of the ROSMAP cohort. A) female and B) male AD subjects in the PHG of the MSBB cohort. C) female and D) male AD subjects in the ROSMAP cohort.
DOI: 10.6084/m9.figshare.26598371.v1
title: Additional file 9 of Sex specific molecular networks and key drivers of Alzheimer’s disease

description: Additional file 9: Supplemental Table 9. Modular differential connectivity analysis of male and female specific co-expression networks. MDC was calculated as the ratio of the mean module connectivity in one network to that for the same set of genes in another network. FDRs were calculated by two methods, sample-based permutation and gene-based permutation. The greater one of the two FDRs for each gene was taken as the final FDR for MDC of a module. The MDC analysis of A) female AD network modules versus male network in the PHG of the MSBB cohort, B) male AD network modules versus female network in the PHG of the MSBB cohort, C) female AD network modules versus male network in the PFC of the ROSMAP cohort, D) male AD network modules versus female network in the PFC of the ROSMAP cohort.
DOI: 10.15468/dl.wdvewb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.258838 -32.443344, 149.258838 -32.450082, 149.26333 -32.450082, 149.26333 -32.443344, 149.258838 -32.443344))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066454-240626123714530/datasets/export for details.
DOI: 10.17632/hm2m2rz45r.1
title: Experimental warming effects on microbial community growth and mortality during the cold season in coastal waters of Taiwan and Japan

description: The study hypothesizes that viral lysis and grazing by microzooplankton significantly influence the net growth rates of bacterial populations, Synechococcus spp., and picoeukaryotes in marine environments. These processes may vary under different temperature conditions, particularly with ambient versus warming temperatures, and across different sample locations. The data comprises net growth rates of four microbial groups—bacteria, Synechococcus spp., picoeukaryotes, and picoeukaryotes—obtained from dilution series experiments. These experiments were conducted at three stations, T, J1 and J2, over two incubation periods (day 2 and day 5) and under two temperature regimes (ambient and warming). The seawater samples were filtered to two different levels: 0.2μm (removes large grazers) and 30 kDa (removes all microorganisms including virus) filtered seawater. The former retains small viruses and dissolved organic matter, while the latter is nearly sterile, removing even the smallest viruses and bacteria. The data indicates that warming temperatures generally enhance the net growth rates of bacteria and picoeukaryotes over time. This could be due to increased metabolic rates or a reduction in viral and grazing pressures at higher temperatures. These findings are crucial for understanding microbial dynamics in marine environments, particularly in the context of climate change. The differential responses of bacterial, cyanobacterial (Synechococcus spp.), and picoeukaryotic populations to viral lysis, grazing, and temperature changes can inform predictive models of microbial community structure and function under future oceanic conditions. This understanding is essential for managing marine ecosystems and predicting their responses to global warming.
DOI: 10.15468/dl.fambn2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron cockburnii (Argent, A.Lamb & Phillipps) Craven"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066455-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13314102
title: Impacts of Potential Investments on Electricity Resource Adequacy and Emissions in Texas
DOI: 10.5281/zenodo.13314103
title: Impacts of Potential Investments on Electricity Resource Adequacy and Emissions in Texas
DOI: 10.17632/gg8c7t3v54.1
title: Montreal Road Collision Dataset (2012-2021)

description: This dataset is derived from the public dataset of road collisions that occurred in Montreal, which is accessible at https://www.donneesquebec.ca/recherche/dataset/vmtl-collisions-routieres. Unlike the original dataset, this dataset has been preprocessed (handling of missing data, data rebalancing via the SMOTE-ENN algorithm, etc.), and categorical variables have been encoded, making it ready for machine learning and other tasks. The .pkl file containing the encoding and the notebook demonstrating how to use the .pkl file are provided. For more details, please refer to the table below, which represents the data dictionary of this dataset. This dataset is shared under the Attribution License (CC-BY 4.0).

If you use this dataset for publication, please cite the following reference: Muktar, B.; Fono, V. Toward Safer Roads: Predicting the Severity of Traffic Accidents in Montreal Using Machine Learning. Electronics 2024, 13, 3036. https://doi.org/10.3390/electronics13153036
DOI: 10.6084/m9.figshare.26598467
title: Additional file 1 of Methodological considerations on real-world evidence studies of monoclonal antibodies against the CGRP-pathway for migraine: a systematic review

description: Additional file 1.
DOI: 10.6084/m9.figshare.26598467.v1
title: Additional file 1 of Methodological considerations on real-world evidence studies of monoclonal antibodies against the CGRP-pathway for migraine: a systematic review

description: Additional file 1.
DOI: 10.15468/dl.73qsld
title: Occurrence Download

description: A dataset containing 2018 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asclepias oenotheroides Cham. & Schltdl."
 ]
}

 The dataset includes 2018 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005091-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxtgjh
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtandra pulgarensis Elmer ex H.J.Atkins & Cronk"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160422-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wx5v45
title: Occurrence Download

description: A dataset containing 447862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Human Observation, Material sample, Specimen)",
 "Geometry POLYGON((55.14176 -21.45391,55.90808 -21.45391,55.90808 -20.78453,55.14176 -20.78453,55.14176 -21.45391))",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 447862 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017131-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5rq5i
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Guillenia lemmonii (S. Wats.) R. Buck",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 23 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005092-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.982tc8
title: Occurrence Download

description: A dataset containing 95891 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithobates catesbeianus (Shaw, 1802)"
 ]
}

 The dataset includes 95891 records from 281 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160452-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.27nud4
title: Occurrence Download

description: A dataset containing 365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Lithobates catesbeianus (Shaw, 1802)"
 ]
}

 The dataset includes 365 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160460-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqz7je
title: Occurrence Download

description: A dataset containing 16006 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ministerio de Medio Ambiente, y Medio Rural y Marino. Dirección General de Medio Natural y Política Forestal. Inventario Nacional de Biodiversidad 2007, Peces Continentales"
 ]
}

 The dataset includes 16006 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005092-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2019-07.1806258/2367128
title: Data for EMSL Project 49692 from July 2019
DOI: 10.15468/dl.osbklv
title: Occurrence Download

description: A dataset containing 1156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is French Polynesia",
 "Year is 2006",
 "DatasetKey is The fishes collection (IC) of the Muséum national d'Histoire naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 1156 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010249-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2019-07.1806259/2367129
title: Data for EMSL Project 49692 from July 2019
DOI: 10.15468/dl.k5sxvy
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buccinanops monilifer (Kiener, 1834)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 139 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043861-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u68t3m
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dichaetanthera articulata Endl."
 ]
}

 The dataset includes 81 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030458-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xuhmqo
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ascoseira Skottsberg, 1907",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013792-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2019-07.1804446/2367130
title: Data for EMSL Project 49692 from July 2019
DOI: 10.15468/dl.guunes
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fumaria indica (Hausskn.) Pugsley"
 ]
}

 The dataset includes 229 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052236-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2019-07.1806225/2367131
title: Data for EMSL Project 49692 from July 2019
DOI: 10.15468/dl.f5hrd3
title: Occurrence Download

description: A dataset containing 495 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dyschoriste trichocalyx (Oliv.) Lindau"
 ]
}

 The dataset includes 495 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030457-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgfo0s
title: Occurrence Download

description: A dataset containing 2989 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Asparagopsis armata Harv.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2989 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013798-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2019-07.1806253/2367132
title: Data for EMSL Project 49692 from July 2019
DOI: 10.15468/dl.sg5tda
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Oophaga anchicayensis Posso-Terranova & Andrés, 2018"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043843-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.