cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rfu36n
title: Occurrence Download

description: A dataset containing 3819 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Continent is Antarctica",
 "Continent is Asia",
 "Continent is Europe",
 "Continent is North America"
 ]
 },
 "Geometry POLYGON((-170.33203 27.07031,185.80078 27.07031,185.80078 89.29688,-170.33203 89.29688,-170.33203 27.07031))",
 "TaxonKey is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 3819 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168680-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.igitzx
title: Occurrence Download

description: A dataset containing 2755 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Schoenoplectus triqueter (L.) Palla"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2755 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019139-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5gr6nw
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Lewis Creek fish surveys 2016"
 ]
}

 The dataset includes 176 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000796-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lmykkw
title: Occurrence Download

description: A dataset containing 478 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Notoscopelus elongatus (Costa, 1844)"
 ]
}

 The dataset includes 478 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019141-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6dwvk3
title: Occurrence Download

description: A dataset containing 1941 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Prosopis juliflora (Sw.) DC."
 ]
}

 The dataset includes 1941 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168686-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jutkhc
title: Occurrence Download

description: A dataset containing 83176874 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 83176874 records from 6142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019141-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtrmg8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fugu vermicularis (Temminck & Schlegel, 1850)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036031-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3632342_d5.v1
title: Additional file 3:  of RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress

description: KEGG_classification. (XLS 264 kb)
DOI: 10.6084/m9.figshare.c.3632156_d9.v1
title: Additional file 2: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

description: Comparison of TE components between individual subtypes of lncRNAs and mRNAs. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3632156_d7.v1
title: Additional file 4: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

description: The protein-coding genes within 10 k and 100Â k upstream and downstream of an lncRNA. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.c.3632156_d6.v1
title: Additional file 8: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

description: LncRNA-protein coding gene pairs with both co-localization and correlation relationships. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.c.3632156_d5.v1
title: Additional file 6: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

description: Pearson correlations between protein-coding genes and lncRNAs. (LIST 1829Â kb)
DOI: 10.6084/m9.figshare.c.3632150_d5.v1
title: Additional file 5: of Role of plant MicroRNA in cross-species regulatory networks of humans

description: The result of grouping generic GO categories for Arabidopsis and human individually by CateGOrizer. (XLS 23 kb)
DOI: 10.6084/m9.figshare.c.3632156_d4.v1
title: Additional file 3: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

description: Comparison of TE components among three subtypes of lncRNAs. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3632156_d3.v1
title: Additional file 9: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

description: Primers used in quantitative PCR analysis. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3632150_d3.v1
title: Additional file 4: of Role of plant MicroRNA in cross-species regulatory networks of humans

description: The technical details and p-values to describe the enrichment of GO terms for human. (XLS 96 kb)
DOI: 10.6084/m9.figshare.c.3632165_d2.v1
title: Additional file 3: of Serotonin-1A receptor alterations in depression: a meta-analysis of molecular imaging studies

description: Study Quality Assessment. The quality assessment for each article included. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3632165_d1.v1
title: Additional file 2: of Serotonin-1A receptor alterations in depression: a meta-analysis of molecular imaging studies

description: Primary Data. Data extracted from the articles that met the inclusion criteria. (XLSX 25 kb)
DOI: 10.15468/dl.69jb2e
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buccinum isaotakii Kira, 1959",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036033-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3631874_d2.v1
title: MOESM2 of Genomic and secretomic insight into lignocellulolytic system of an endophytic bacterium Pantoea ananatis Sd-1

description: Additional file 2: Table S2. Carbohydrate-active enzymes identified in the Pantoea ananatis Sd-1 genome.xlsx.
DOI: 10.6084/m9.figshare.c.3631778_d1.v1
title: Additional file 3: of “Hit-and-Run” transcription: de novo transcription initiated by a transient bZIP1 “hit” persists after the “run”

description: Dataset S1. Gene lists of bZIP1 targets identified in 4tU-labeled fractions and ChIP-Seq replications. (XLSX 204 kb)
DOI: 10.6084/m9.figshare.c.3631670_d1.v1
title: Additional file 1: of Usefulness of ascitic fluid lactoferrin levels in patients with liver cirrhosis

description: The raw data of this study. All study materials and data are available. (XLS 74Â kb)
DOI: 10.6084/m9.figshare.c.3631715_d1.v1
title: Additional file 1. of Comparative morphology and development of extra-ocular muscles in the lamprey and gnathostomes reveal the ancestral state and developmental patterns of the vertebrate head

description: Homology and developmental patterning of EOMs. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3631577_d1.v1
title: Additional file 2: of Evaluation of a comprehensive intervention with a behavioural modification strategy for childhood obesity prevention: a nonrandomized cluster controlled trial

description: Individual prescription. (XLS 71 kb)
DOI: 10.15468/dl.9c6c34
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pasiphaea japonica Omori, 1976",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036034-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sr3dxt
title: Occurrence Download

description: A dataset containing 1221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (IDN.23_1, IDN.23.21_1)",
 "IucnRedListCategory is VU",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1221 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036035-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3631091_d6.v1
title: Additional file 1: Table S1: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The top 20 most represented GO terms of DEG in the biological process category at the 5â  7 DAF (S1-G1). (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3631091_d7.v1
title: Additional file 3: Table S3: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The top 20 most represented GO terms of DEG in the biological process category at the 25â  27 DAF (S3-G3). (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3631091_d4.v1
title: Additional file 7: Table S7: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: Lipid-related DEGs in Brassica napus and their lipid-related homologous genes in arabidopsis. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3631091_d5.v1
title: Additional file 5: Table S5: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The lipid-related homologous genes in arabidopsis for the genes in QTL regions. (XLS 24 kb)
DOI: 10.6084/m9.figshare.28033040
title: Impact of App Based Mobile Banking

description: This study has policy implications to promote App-based mobile banking to increase the adoption of digital payment options without increasing security concerns.
DOI: 10.6084/m9.figshare.c.3631091_d3.v1
title: Additional file 6: Table S6: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The gi number of genes in NR database homologous with DEGs between varieties in QTL regions. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3631091_d2.v1
title: Additional file 4: Table S4: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The physical location of the oil related QTLs. (XLS 21 kb)
DOI: 10.6084/m9.figshare.c.3631091_d1.v1
title: Additional file 2: Table S2: of Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

description: The top 20 most represented GO terms of DEG in the biological process category at the 15â  17 DAF (S2-G2). (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3630986_d2.v1
title: Additional file 1: of Genome-wide identification and evolutionary analyses of bZIP transcription factors in wheat and its relatives and expression profiles of anther development related TabZIP genes

description: Table S1. Nomenclature and chromosomal location of bZIP family genes in wheat, T.urartu, Ae.tauschii, barley and Brachypodium. Table S2. Orthologs and in-paralogs in bZIP family between each pair of wheat and its relatives. Table S3. Numbers of differentially expressed bZIP genes in five comparison groups. Table S4. Lists of differentially expressed bZIP genes in five comparison groups. Table S5. In-paralog pairs within 23 TabZIP proteins we studied. Table S6. Distribution of cis-acting elements in promoter regions of TabZIP genes. Table S7. Functions of cis-acting elements in promoter regions of TabZIP genes. Table S8. Wheat lines, growth conditions, and sampling timepoints for microarray data analysis. The sample features were represented by the wheat line name and a letter (A, B, E or F) followed by a number referring to the anther length when samples were taken. The letters ‘A’, ‘B’, ‘E’ and ‘F’ indicated the growth conditions of wheat lines. ‘A’: 10 °C with a 12 h-light/12 h-dark photoperiod; ‘B’: 10 °C with a 14 h-light/10 h-dark photoperiod; ‘E’: 20 °C with a 12 h-light/12 h-dark photoperiod; ‘F’: 20 °C with a 14 h-light/10 h-dark photoperiod. (ZIP 146 kb)
DOI: 10.6084/m9.figshare.c.3630983_d2.v1
title: Additional file 2: of Enhancers reside in a unique epigenetic environment during early zebrafish development

description: An excel file listing the primers used in the 4C-Seq analysis. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3630983_d3.v1
title: Additional file 3: of Enhancers reside in a unique epigenetic environment during early zebrafish development

description: An excel file listing the primers used to clone the enhancers in the transgenic assays. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3630986_d1.v1
title: Additional file 2: of Genome-wide identification and evolutionary analyses of bZIP transcription factors in wheat and its relatives and expression profiles of anther development related TabZIP genes

description: Figure S1. Orthologous bZIP genes between T.urartu and Ae.tauschii. Figure S2. Distribution of bZIP family genes in subgroups and clades. bZIP family genes of wheat, T.urantu, Ae.tauschii, rice and Arabidopsis were divided into 10 subgroups and 4 clades. The number in the bracket indicated the total number of bZIP family genes in the corresponding genome. Figure S3. Phylogenetic relationship of 23 TabZIP proteins and 8 known floral development related bZIP proteins. Figure S4. Distribution of conserved motifs in 23 TabZIP and 8 known floral development related bZIP proteins. Figure S5. Morphological characteristics of floral organs and pollen iodine staining. The wheat materials were taken from Fuyang (Anhui Province), where Jing411, TY806 and F1 were male-fertile while BS366 was male-sterile. The first row showed the stamen and pistils before blooming; The second row showed anthers after blooming; The third row showed iodine staining results of pollen grains; The fourth row showed the statistical data of pollen iodine staining. The total pollen count used for data statistics was about 250 in four wheat lines. A, B, C and D meant 4 different kinds of shape-color types for pollen grains after iodine staining: (A) circular, opaque and dark brown-black; (B) circular, opaque or partially transparent and light brown-black; (C) circular, transparent and light yellow; (D) transparent in an irregular shape and light yellow. Figure S6. Number of bZIP family members in each genome (or sub-genome) and number of ortholog pairs between each pair of genomes and sub-genomes. Each box presented a genome or sub-genome, and the numbers in the boxes referred to the sums of bZIP family members in respective genomes. The number besides the straight line connecting each pair of genomes and sub-genomes indicated the sum of ortholog pairs between them. (ZIP 2480 kb)
DOI: 10.6084/m9.figshare.c.3630983_d1.v1
title: Additional file 1: of Enhancers reside in a unique epigenetic environment during early zebrafish development

description: Figures S1â  S6. (ZIP 3593 kb)
DOI: 10.6084/m9.figshare.c.3630905_d2.v1
title: MOESM2 of Identification of acetyltransferase genes (HAT1 and KAT8) regulating HBV replication by RNAi screening

description: Additional file 2: Table S2. Primers for pgRNA and qRT-PCR.
DOI: 10.15468/dl.z5cvxs
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pasiphaea gracilis Hayashi, 1999",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036036-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkjzav
title: Occurrence Download

description: A dataset containing 448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Teucrium lusitanicum Schreb."
 ]
}

 The dataset includes 448 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036037-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21335/nmdc-662948296
title: Norwegian West Coast OA Timeseries 2024

description: Ocean acidification timeseries of full water depth stations at the Norwegian west coast. Discrete samples of inorganic carbon (DIC), total alkalinity (TA), nutrients, and hydrography. The data are collected during the period December 2023 to October 2024. The data represent a continuation of timeseries started in 2007. The research vessel Hans Brattstrøm has been used to collect the water samples, which are analysed for DIC, TA, and nutrients. Dicrete samples for salinity and oxygen are also collected from teh deepest water and used to calibrate the hydrography and oxygen sensors. An RBR sensor is used for hydrographic measurements.
DOI: 10.5281/zenodo.13773228
title: Quantum Data Centres in the Presence of Noise data

description: This dataset contains all of the raw data needed to reproduce the work in 




arXiv:2407.10769




and any future publications of that work. It also includes data on a variety of edge cases and related investigations that could not be included in the main paper.

The file names and directory names are verbose and intended to indicate what they contain.

The terms F_werner and F_w refer to the Werner state fidelity and are used interchangeably. p_error and p_depolar_error_cnot, etc are also interchangeable and refer to the error probability of imperfect two-qubit gate operation (this appears as \epsilon_{cnot} in the aforementioned paper). 

alpha, where it appears, refers to the coefficient of |0> in the input state of the control qubit when a single remote CNOT gate is considered. Phase refers to the relative phase between the coefficients of |0> and |1> in the same context. These parameters also appears in some of the data from larger circuits (marked MQT bench after the benchmarking suite that the circuits come from) but should be ignored as they do not influence the result in that case and are instead indicative only of certain (now deprecated) simulator settings (indicating the possibility of creating the relevant input state) when the data was taken. The inclusion of those parameters in the data files was erroneous. The input state indicated by the parameters in that context was not inputted to the circuit. Instead the circuits were initialised as described in the relevant circuit description. The relevant QASM files can be found on the MQT bench website, which is formally referenced in the work cited above.
DOI: 10.5281/zenodo.13773229
title: Quantum Data Centres in the Presence of Noise data

description: This dataset contains all of the raw data needed to reproduce the work in 




arXiv:2407.10769




and any future publications of that work. It also includes data on a variety of edge cases and related investigations that could not be included in the main paper.

The file names and directory names are verbose and intended to indicate what they contain.

The terms F_werner and F_w refer to the Werner state fidelity and are used interchangeably. p_error and p_depolar_error_cnot, etc are also interchangeable and refer to the error probability of imperfect two-qubit gate operation (this appears as \epsilon_{cnot} in the aforementioned paper). 

alpha, where it appears, refers to the coefficient of |0> in the input state of the control qubit when a single remote CNOT gate is considered. Phase refers to the relative phase between the coefficients of |0> and |1> in the same context. These parameters also appears in some of the data from larger circuits (marked MQT bench after the benchmarking suite that the circuits come from) but should be ignored as they do not influence the result in that case and are instead indicative only of certain (now deprecated) simulator settings (indicating the possibility of creating the relevant input state) when the data was taken. The inclusion of those parameters in the data files was erroneous. The input state indicated by the parameters in that context was not inputted to the circuit. Instead the circuits were initialised as described in the relevant circuit description. The relevant QASM files can be found on the MQT bench website, which is formally referenced in the work cited above.
DOI: 10.5281/zenodo.10829019
title: Global extinction probabilities of terrestrial, freshwater, and marine species groups

description: This is the updated dataset presented in the manuscript titled "Global extinction probabilities of terrestrial, freshwater, and marine species groups".

The dataset gives the code (R code), as well as the resulting raster files for the suggested Global extinction probabilities for different taxonomic groups, for use in Life Cycle Impact Assessment (LCIA). We supply the results on 5arc minute resolution, aggregated for relevant spatial scales (e.g. terrestrial ecoregions or watersheds), as well as at country scale.

For application in LCIA, we recommend applying GEPs to CFs with corresponding species groups and spatial scales. If the species group of the CFs do not match any of the provided GEPs, see (1); if the spatial scale of the CFs do not match any of the provided GEPs, see (2).



If the species groups of the CFs do not match any of the provided sets of GEPs, we recommend recalculating GEPs for corresponding species groups and spatial scales based on the provided R scripts (e.g., see the R script for the freshwater heterotroph GEPs). Alternatively, GEPs can be aggregated to species group combinations by calculating species number-weighted GEP averages of the existing GEPs (see Table 4 in the article for species numbers per species group). In case of the latter approach, we recommend calculate GEP averages for all regions across the world (and not just those included in the analysis) and normalise the region-level average GEPs by the sum of the region-level average GEPs for consistency with the GEP concept.

In addition to species group aggregation, GEPs can be aggregated to different spatial scales by calculating the sum of the cell-level GEPs contained per region (e.g., see R scripts).


 

Updates: corrected mistakes in cnidarians. Removedcpiuntry GEPs for marine species groups.