cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.zkh1893jk
title: 2023 NSF Research Master File

description: SP MS70 drive - Master file of all years 2021-2024 activities linked to
 publication, "Scouring for Prehistory" - An Opportunistic
 Methodology for Sea Floor Archaeology, Georgia, USA.
 https://doi.org/10.3390/heritage7070161
description: geophysics, GIS, ROV, sediment grabs and cores, divng
 PSA, pollen analysis, DNA, UV/blue light, loss on ignition, XRD,
 SEM-EDS, photogrammetry
description: # 2023 NSF Research Master File Copy 4-15-16-2023 & 4-21 cruise
 videos, Lab and Pool videos, Lenovo QGC videos, MATE ROV 2023, NSF Copy
 4-15-16-2023 & 4-21 cruise videos, Reef CCA, Reef KC-Motherlode, Reef
 SAV, RV Savannah ## Description of the data and file structure Copy
 4-15-16-2023 & 4-21 cruise videos are in .mp4, .jpg, and .mov file
 formats. Lab and Pool videos are in .mp4 file format. Lenovo QGC videos
 are in .mkv, .txt, and .tlog file formats and PingViewer is needed to view
 .tlog files. PingViewer is proprietary software and can be purchased
 through [https://bluerobotics.com](https://bluerobotics.com). This data is
 not able to be published in this archive but can be accessed upon request.
 MATE ROV 2023 are in .mp4 and .mkv file formats. NSF Copy 4-15-16-2023
 & 4-21 cruise videos are in .jpg and .mov file formats. Reef CCA is in
 .mp4 file format. Reef KC-Motherlode are in .mkv and .mp4 file formats.
 Reef SAV are in .jpg, .mov, .mp4, and .png file formats. RV Savannah is in
 .mov file format. ## Related Works 2021 NSF Research Master File - DOI
 10.5061/dryad.c2fqz61hw 2022 NSF Research Master File - DOI:
 10.5061/dryad.j6q573np8 "Scouring for Prehistory" - An
 Opportunistic Methodology for Sea Floor Archaeology, Atlantic continental
 shelf, Georgia USA. - DOI:
 [https://doi.org/10.3390/heritage7070161](https://doi.org/10.3390/heritage7070161) "Moats & comets" - A methodology to explore for submerged prehistory at sea floor erosional features formed at artificial reefs, Atlantic continental shelf, GeorgiaUSA. - DOI: [https://doi.org/10.1016/j.quascirev.2024.108725](https://doi.org/10.1016/j.quascirev.2024.108725)
DOI: 10.15468/dl.yvttpq
title: Occurrence Download

description: A dataset containing 341677 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((34 34, 34 75, -15 75, -15 34, 34 34))",
 "SpeciesKey is one of (Bombus lapidarius, Bombus sylvestris, Bombus quadricolor, Bombus haematurus, Bombus muscorum, Bombus lapponicus, Bombus distinguendus, Bombus laesus, Bombus variabilis, Bombus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 341677 records from 812 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003994-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.z08kprrp2
title: prg-1 longevity germline nucleoli: Piwi mutant germ cells transmit a form of heritable stress that promotes longevity

description: The C. elegans Argonaute protein PRG-1/Piwi and associated piRNAs protect
 metazoan genomes by silencing transposons and other types of foreign DNA.
 As prg-1 mutants are propagated, their fertility deteriorates prior to the
 onset of a reproductive arrest phenotype that resembles a
 starvation-induced stress response. We found that late-generation prg-1
 mutants with substantially reduced fertility were long-lived, whereas
 early- or mid-generation prg-1 mutants had normal lifespans. Loss of the
 stress response transcription factor DAF-16 caused mid- or late-generation
 prg-1 mutants to live very short lives, whereas overexpression of DAF-16
 enabled both mid- and late-generation prg-1 mutants to live long.
 Cytoplasmic P-bodies that respond to stress increased in long-lived
 late-generation prg-1 mutants and were transmitted to F1 but not F2
 cross-progeny. Moreover, moderate levels of heritable stress shorten
 late-generation prg-1 mutant longevity when DAF-16 or P bodies are
 deficient. Together, these results suggest that the longevity of
 late-generation prg-1 mutants is a hormetic stress response. However,
 dauer larvae that occur in response to stress were not observed in
 late-generation prg-1 mutants. Small germ cell nucleoli that depended on
 germline DAF-16 were present in late-generation prg-1 mutants but were not
 necessary for their longevity. We propose that prg-1 mutant germ cells
 transmit a form of heritable stress, high levels of which promote
 longevity and strongly reduce fertility. The heritable stress transmitted
 by PRG-1/Piwi mutant germ cells may be generally relevant to epigenetic
 inheritance of longevity.
description: This data was collected on a widefield microscope using DIC
 microscopy and a 60X objective. Measurements of nucleolar and nuclear size
 were made using FIJI image analysis software.
description: # prg-1 longevity germline nucleoli: Piwi mutant germ cells transmit a
 form of heritable stress that promotes longevity
 [https://doi.org/10.5061/dryad.z08kprrp2](https://doi.org/10.5061/dryad.z08kprrp2) Raw image files of germline nucleoli in *C. elegans* young adult animals deficient for Piwi/piRNA-mediated silencing, along with controls and other experimental conditions. Analysis of germline nucleolar size was performed to test for a connection to somatic aging.  ## Description of the data and file structure .dv and .nd2 file types are large image files generated by the DeltaVision and Nikon image acquisition software, respectively. Similarly to TIFFs, they can be opened using FIJI or similar image analysis software.  ## Sharing/Access information Data was derived from the following sources: * DeltaVision and Nikon Ti2 widefield microscopes.
DOI: 10.15468/dl.g34q2q
title: Occurrence Download

description: A dataset containing 584 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "Country is Chile",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cephalorhynchus eutropia"
 ]
}

 The dataset includes 584 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004068-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.5qfttdzfw
title: ACCESS model outputs for FW simulations under PI and LIG boundary conditions

description: The modelling dataset presented here corresponds to the manuscript
 entitled "Australasian hydroclimate response to the collapse of the
 Atlantic Meridional Overturning Circulation under pre-industrial and Last
 Interglacial climates".   Over the last 50 years, the AMOC
 has weakened and is projected to weaken further or even collapse this
 century due to freshwater influx from melting glaciers and ice sheets,
 under climate warming driven by rising greenhouse gas concentrations.
 Despite numerous modelling studies investigating the climatic impacts of
 an AMOC shutdown, little is known about its impact on Australasian
 hydroclimate, particularly under climatic conditions warmer than the
 pre-industrial (PI). Here, using the ACCESS-ESM1.5 model, we assess the
 processes impacting seasonal hydroclimate in the Australasian region in
 response to an AMOC shutdown under PI and Last Interglacial (LIG) climatic
 background conditions.
description: This data is generated by peforming numerical simulations with
 the Australian Community Climate and Earth System Simulator Earth System
 Model Version 1.5 climate model. It was processed using software such as
 national climate operator (NCO), climate data operator (CDO), and ferret
 to generate monthly means of simulations used in this study. 
  
description: # ACCESS model outputs for FW simulations under PI and LIG boundary
 conditions
 [https://doi.org/10.5061/dryad.5qfttdzfw](https://doi.org/10.5061/dryad.5qfttdzfw) The data files pi.nc, pifw.nc, lig.nc, ligfw.nc contains monthly mean values to recreate all the plots in the manuscript.  ## Code/Software All the final data is in .nc or netcdf format, which can be opened and read by free/open software applications such as Panoply, HDFview, ferret, NCO (ncview) and Python. ## Description of the data and file structure The data files are in netcdf format. Below is the description for all the variables. The units are provided in brackets. amocts: Atlantic Meridional Overturning Circulation time series (Sv) uwind: surface zonal wind (m/s) vwind: surface meridional wind (m/s) sat: surface air temperature (K) precip: precipitation (kg m-2 s-1) psl: mean sea level pressure (Pa) zg: geopotential height (m) evap: evaporation (kg m-2 s-1) sice: sea ice (fractional values). ## Sharing/Access information Data was derived from the model outputs of simulations present at the National Computational Infrastructure. The model code is available at [https://access-hive.org.au/models/run-a-model/run-access-esm/#prerequisites](https://access-hive.org.au/models/run-a-model/run-access-esm/#prerequisites)
DOI: 10.5281/zenodo.18406682
title: Table 1 in A phylogenomic analysis of the genus Auyantepuia (Scorpiones: Chactidae) in French Guiana with the descriptions of two new species

description: Table 1. Percentage identity matrix (in percent) of the complete COI gene.
JCAUCRE 17JCAUTRI 19JCAUITO 22JCAUSAU 22JCAUCAM 22JCAUELA 22JCAUNOU 22JCAUTAM 22JCAUTRE 18JCAUJAV 22JCAUSAB 17JCAUGRO 22JCAUSIN 22JCAUTOU 22JCAUCRE 1793.791.092.190.089.989.589.588.693.191.991.091.391.4JCAUTRI 1993.790.390.689.889.589.089.287.892.091.791.490.690.7JCAUITO 2291.090.392.989.089.089.088.888.291.491.791.390.490.5JCAUSAU 2292.190.692.989.389.488.689.088.691.892.092.290.690.7JCAUCAM 2290.089.889.089.396.797.696.289.890.390.889.889.689.6JCAUELA 2289.989.589.089.496.796.196.489.090.090.489.989.289.2JCAUNOU 2289.589.089.088.697.696.195.989.390.190.789.289.389.3JCAUTAM 2289.589.288.889.096.296.495.989.089.889.989.489.189.2JCAUTRE 1888.687.888.288.689.889.089.389.089.389.188.588.888.8JCAUJAV 2293.192.091.491.890.390.090.189.889.394.192.391.491.4JCAUSAB 1791.991.791.792.090.890.490.789.989.194.191.891.291.1JCAUGRO 2291.091.491.392.289.889.989.289.488.592.391.890.590.6JCAUSIN 2291.390.690.490.689.689.289.389.188.891.491.290.599.9JCAUTOU 2291.490.790.590.789.689.289.389.288.891.491.190.699.9
description: Published as part of Ythier, Eric, Chevalier, Johan, Moreau, Lucie & Murienne, Jérôme, 2026, A phylogenomic analysis of the genus Auyantepuia (Scorpiones: Chactidae) in French Guiana with the descriptions of two new species, pp. 36 in European Journal of Taxonomy 1034 on page 36, DOI: 10.5852/ejt.2026.1034.3147, http://zenodo.org/record/18406674
DOI: 10.5281/zenodo.18406681
title: Table 1 in A phylogenomic analysis of the genus Auyantepuia (Scorpiones: Chactidae) in French Guiana with the descriptions of two new species

description: Table 1. Percentage identity matrix (in percent) of the complete COI gene.
JCAUCRE 17JCAUTRI 19JCAUITO 22JCAUSAU 22JCAUCAM 22JCAUELA 22JCAUNOU 22JCAUTAM 22JCAUTRE 18JCAUJAV 22JCAUSAB 17JCAUGRO 22JCAUSIN 22JCAUTOU 22JCAUCRE 1793.791.092.190.089.989.589.588.693.191.991.091.391.4JCAUTRI 1993.790.390.689.889.589.089.287.892.091.791.490.690.7JCAUITO 2291.090.392.989.089.089.088.888.291.491.791.390.490.5JCAUSAU 2292.190.692.989.389.488.689.088.691.892.092.290.690.7JCAUCAM 2290.089.889.089.396.797.696.289.890.390.889.889.689.6JCAUELA 2289.989.589.089.496.796.196.489.090.090.489.989.289.2JCAUNOU 2289.589.089.088.697.696.195.989.390.190.789.289.389.3JCAUTAM 2289.589.288.889.096.296.495.989.089.889.989.489.189.2JCAUTRE 1888.687.888.288.689.889.089.389.089.389.188.588.888.8JCAUJAV 2293.192.091.491.890.390.090.189.889.394.192.391.491.4JCAUSAB 1791.991.791.792.090.890.490.789.989.194.191.891.291.1JCAUGRO 2291.091.491.392.289.889.989.289.488.592.391.890.590.6JCAUSIN 2291.390.690.490.689.689.289.389.188.891.491.290.599.9JCAUTOU 2291.490.790.590.789.689.289.389.288.891.491.190.699.9
description: Published as part of Ythier, Eric, Chevalier, Johan, Moreau, Lucie & Murienne, Jérôme, 2026, A phylogenomic analysis of the genus Auyantepuia (Scorpiones: Chactidae) in French Guiana with the descriptions of two new species, pp. 36 in European Journal of Taxonomy 1034 on page 36, DOI: 10.5852/ejt.2026.1034.3147, http://zenodo.org/record/18406674
DOI: 10.5061/dryad.g1jwstr06
title: Data from: Assessing temporal transition between microgranular and hyaline tests of calcareous microplankton during the Late Jurassic

description: Calcareous microplankton increased in abundance during the latest
 Jurassic, coinciding with the increase in abundance of calcareous
 nannofossils and with the onset of deposition of pelagic calcareous oozes.
 However, the timing and causes of the shift from microgranular tests of
 the earliest microplankton (chitinoidellids) to hyaline tests of
 calpionellids are obscured because the ultrastructure of two-layered
 praecalpionellids that occur during the Tithonian is poorly documented.
 Here, we investigate the ultrastructure of chitinoidellids and
 praecalpionellids from Upper Tithonian deposits in the Western
 Carpathians. We show that (1) the chitinoidellid microgranular layer is
 formed by elongated, euhedral, densely-packed, nanometric needles rather
 than by fragments of calcareous nannofossils, (2) two-layered
 chitinoidellids (Semichitinoidella) are formed by an internal
 microgranular layer (identical to that of Chitinoidella) and by
 an external hyaline prismatic layer, and (3)
 two-layered Praetintinnopsella exhibits an internal
 hyaline layer (with densely-packed, equant microcrystals) and an external
 layer formed by a dark organic rim. The external layer
 in Praetintinnopsella thus does not have any relation to
 the microgranular layer in chitinoidellids and the external hyaline layer
 of Semichitinoidella is not equivalent in structure to
 the hyaline layer of Praetintinnopsella. As both single-layer and
 two-layered chitinoidellids appear prior to the first appearance
 of Praetintinnopsella but still co-occur with this genus
 in the lowermost Upper Tithonian deposits, the origin of
 two-layered Praetintinnopsella either reflects a major
 transformation in biomineralization towards larger and more packed
 crystals during their earlier divergence from the chitinoidellid lineage
 or an origination of two-layered tests with a hyaline layer from
 an independent non-chitinoidellid ancestor.
description: # Assessing temporal transition between microgranular and hyaline tests of
 calcareous microplankton during the Late Jurassic
 [https://doi.org/10.5061/dryad.g1jwstr06](https://doi.org/10.5061/dryad.g1jwstr06) ## Description of the data and file structure The measurements of crystal length and width (in micrometers) and the length/width ratio in test layers of three genera (Semichitinoidella, Chitinoidella, Praetintinnopsella). Each specimen is characterized by a unique combination of sample ID (bed number) and specimen ID. The length and width was measured on ten crystals in each specimen (and each specimen is thus represented by ten rows). Source refers to the imaging method (SEM - scanning electron microscopy, BSE - back-scattered electrons). File name refers to the image number and Preservation refers to the quality of specimen preservation (poor - tests are markedly affected by diagenetic alteration).
DOI: 10.5061/dryad.rn8pk0pm8
title: Uncertainties in greenhouse gas emission factors: A comprehensive analysis of switchgrass-based biofuel production

description: This study investigates uncertainties in greenhouse gas (GHG) emission
 factors related to switchgrass-based biofuel production in Michigan. Using
 three life cycle assessment (LCA) databases— US lifecycle inventory
 database (USLCI), GREET, and Ecoinvent—each with multiple versions, we
 recalculated the global warming intensity (GWI) and GHG mitigation
 potential in a static calculation. Employing Monte Carlo simulations along
 with local and global sensitivity analyses, we assess uncertainties and
 pinpoint key parameters influencing GWI. The convergence of results across
 our previous study, static calculations, and Monte Carlo simulations
 enhances the credibility of estimated GWI values. Static calculations,
 validated by Monte Carlo simulations, offer reasonable central tendencies,
 providing a robust foundation for policy considerations. However, the
 wider range observed in Monte Carlo simulations underscores the importance
 of potential variations and uncertainties in real-world applications.
 Sensitivity analyses identify biofuel yield, GHG emissions of electricity,
 and soil organic carbon (SOC) change as pivotal parameters influencing
 GWI. Decreasing uncertainties in GWI may be achieved by making greater
 efforts to acquire more precise data on these parameters. Our study
 emphasizes the significance of considering diverse GHG factors and
 databases in GWI assessments and stresses the need for accurate
 electricity fuel mixes, crucial information for refining GWI assessments
 and informing strategies for sustainable biofuel production.
description: # Uncertainties in Greenhouse Gas Emission Factors: A Comprehensive
 Analysis of Switchgrass-Based Biofuel Production
 [https://doi.org/10.5061/dryad.rn8pk0pm8](https://doi.org/10.5061/dryad.rn8pk0pm8) ## Description of the Data and file structure Monte Carlo results.xlsx The Monte Carlo results.xlsx file contains comprehensive data derived from Monte Carlo simulations and distribution functions used for GHG emission factors and input parameters. The file is organized into two primary sheets: Sheet 1: "Monte Carlo Simulation" This sheet presents the results of the Monte Carlo simulations. Sheet 2: "Distribution" This sheet includes the distribution functions used for GHG emission factors and input parameters.
DOI: 10.15468/dl.bhpuvb
title: Occurrence Download

description: A dataset containing 415 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tachinidae"
 ]
}

 The dataset includes 415 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004071-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5cj88056
title: MassIVE MSV000100628 - Metabolic Remodeling of the Parkinson Disease Frontal Cortex Revealed by LC-MS/MS Metabolomics
title: Here, we applied LC-MS/MS-based untargeted metabolomics to post-mortem frontal cortex tissue from PD and neurologically normal control donors, with statistical models adjusted for age, sex, and post-mortem interval. Complementary Ingenuity Pathway Analysis supported activation of oxidative stress and inflammatory processes.
DOI: 10.6084/m9.figshare.31173784
title: EL RASTRO DE LA

description: La explicaci´on dominante de la cognici´on asume una ruptura efectiva entre la din´ami-ca f´ısica fundamental y la organizaci´on biol´ogica de alto nivel, atribuyendo la emergenciade la mente a propiedades colectivas irreductibles del tejido neuronal. En este trabajose propone una hip´otesis alternativa basada en el principio de continuidad operativa: losprocesos cognitivos no introducen nuevas leyes, sino que constituyen una reorganizaci´onjer´arquica de operaciones informacionales preexistentes en los campos f´ısicos fundamen-tales. Partiendo de la no-separabilidad ontol´ogica entre materia y campo, se argumentaque la actividad neuronal (incluyendo las fluctuaciones tradicionalmente clasificadas comoruido) puede interpretarse como la proyecci´on macrosc´opica de din´amicas informacionalessubyacentes, conservadas a trav´es de escalas mediante transformaciones no unitarias peroestructuralmente coherentes.Se introduce el concepto de informaci´on operativa como magnitud conservada en sen-tido funcional, aun en presencia de decoherencia t´ermica, y se discute su papel en laestabilidad de la raz´on l´ogica y matem´atica. Finalmente, se propone un marco emp´ıricobasado en aprendizaje autom´atico y an´alisis de patrones para evaluar la existencia de iso-morfismos estad´ısticos entre estructuras presentes en sistemas f´ısicos fundamentales y enla actividad neuronal subumbral. Este enfoque no postula mecanismos ex´oticos ni excep-ciones biol´ogicas a la f´ısica conocida, sino que explora las consecuencias a´un no agotadasde su aplicaci´on consistente a la cognici´on
DOI: 10.6084/m9.figshare.31173784.v1
title: EL RASTRO DE LA

description: La explicaci´on dominante de la cognici´on asume una ruptura efectiva entre la din´ami-ca f´ısica fundamental y la organizaci´on biol´ogica de alto nivel, atribuyendo la emergenciade la mente a propiedades colectivas irreductibles del tejido neuronal. En este trabajose propone una hip´otesis alternativa basada en el principio de continuidad operativa: losprocesos cognitivos no introducen nuevas leyes, sino que constituyen una reorganizaci´onjer´arquica de operaciones informacionales preexistentes en los campos f´ısicos fundamen-tales. Partiendo de la no-separabilidad ontol´ogica entre materia y campo, se argumentaque la actividad neuronal (incluyendo las fluctuaciones tradicionalmente clasificadas comoruido) puede interpretarse como la proyecci´on macrosc´opica de din´amicas informacionalessubyacentes, conservadas a trav´es de escalas mediante transformaciones no unitarias peroestructuralmente coherentes.Se introduce el concepto de informaci´on operativa como magnitud conservada en sen-tido funcional, aun en presencia de decoherencia t´ermica, y se discute su papel en laestabilidad de la raz´on l´ogica y matem´atica. Finalmente, se propone un marco emp´ıricobasado en aprendizaje autom´atico y an´alisis de patrones para evaluar la existencia de iso-morfismos estad´ısticos entre estructuras presentes en sistemas f´ısicos fundamentales y enla actividad neuronal subumbral. Este enfoque no postula mecanismos ex´oticos ni excep-ciones biol´ogicas a la f´ısica conocida, sino que explora las consecuencias a´un no agotadasde su aplicaci´on consistente a la cognici´on
DOI: 10.15468/dl.d8xgxa
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-67 44.82,-65.5 44.82,-65.5 46,-67 46,-67 44.82))",
 "IucnRedListCategory is VU",
 "OccurrenceStatus is Present",
 "TaxonKey is Fringillidae",
 "Year 2013-2023"
 ]
}

 The dataset includes 91 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004073-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.