cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sapvy9
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((27.00893 11.30761,72.99107 11.30761,72.99107 29.69239,27.00893 29.69239,27.00893 11.30761))",
 "HasCoordinate is true",
 "TaxonKey is Bufo arabicus Heyden, 1827",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 59 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022605-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzqy2a
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Darwinia hortiorum K.R.Thiele"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153325-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byymfd
title: Occurrence Download

description: A dataset containing 2109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is CAN.1_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Botaurus lentiginosus (Rackett, 1813)"
 ]
}

 The dataset includes 2109 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238730-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7823d
title: Occurrence Download

description: A dataset containing 174872 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ptilonorhynchus violaceus (Vieillot, 1816)"
 ]
}

 The dataset includes 174872 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083438-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kdprwk
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "TaxonKey is Theobroma cacao L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 145 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011782-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ex52wt
title: Occurrence Download

description: A dataset containing 28011 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((67.41211 23.88584,77.7832 6.14055,98.34961 29.84064,79.89258 35.88905,74.0918 35.88905,67.41211 23.88584))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Actinopterygii"
 ]
}

 The dataset includes 28011 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271483-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4w3dv
title: Occurrence Download

description: A dataset containing 21502 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Cameroon, Central African Republic, Congo, Democratic Republic of the, Congo, Gabon, Angola, Nigeria, Equatorial Guinea)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Orchidaceae"
 ]
}

 The dataset includes 21502 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083404-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ixkrch
title: Occurrence Download

description: A dataset containing 5406 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diospyros mespiliformis Hochst. ex A.DC."
 ]
}

 The dataset includes 5406 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011791-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9akxj
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "TaxonKey is Polygonum cuspidatum Siebold & Zucc."
 ]
}

 The dataset includes 162 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0275384-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7wxevu
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005864-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txfi6o
title: Occurrence Download

description: A dataset containing 501 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parnassius tianschanicus Oberthür, 1879"
 ]
}

 The dataset includes 501 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022610-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.439gyb
title: Occurrence Download

description: A dataset containing 898 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Korea, Republic of, Korea (Democratic People’s Republic of), Russian Federation)",
 "TaxonKey is Populus davidiana Dode"
 ]
}

 The dataset includes 898 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013072-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wdh85
title: Occurrence Download

description: A dataset containing 56620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Petrorhagia prolifera (L.) P.W.Ball & Heywood",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 56620 records from 761 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005826-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqqrvu
title: Occurrence Download

description: A dataset containing 20389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Negaprion brevirostris (Poey, 1868)"
 ]
}

 The dataset includes 20389 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171433-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.483yvb
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004377-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgg3gr
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cololejeunea longifolia (Mitt.) Benedix ex Mizut."
 ]
}

 The dataset includes 306 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0326351-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ae67ef
title: Occurrence Download

description: A dataset containing 4880 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((23.41619 -34.00678,23.48431 -34.00678,23.48431 -33.95303,23.41619 -33.95303,23.41619 -34.00678))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 4880 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171436-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cr422e
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Knodus gamma Géry, 1972"
 ]
}

 The dataset includes 80 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0326325-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krty6x
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004385-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33brwn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cardamine clematitis Shuttlew. ex A.Gray",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0269049-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8jbgw
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ghatsa montana (Herre, 1945)"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0326355-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6wu5b
title: Occurrence Download

description: A dataset containing 6193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "Country is Senegal",
 "IucnRedListCategory is one of (VU, EN, CR)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 1000-2023"
 ]
}

 The dataset includes 6193 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013323-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtyknt
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Draba incana L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 231 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0269074-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35vns4
title: Occurrence Download

description: A dataset containing 2050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Rotheca myricoides (Hochst.) Steane & Mabb."
 ]
}

 The dataset includes 2050 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013358-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gg29uf
title: Occurrence Download

description: A dataset containing 28217 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eichhornia crassipes (Mart.) Solms"
 ]
}

 The dataset includes 28217 records from 515 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0266496-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7jdvf
title: Occurrence Download

description: A dataset listing the 61 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Sightings Map of Invasive Plants in Portugal"
 ]
}

 The dataset's 61 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0326333-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jrtpg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mesotrichia chapini LeVeque, 1928"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015960-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.98yd84
title: Occurrence Download

description: A dataset containing 1621 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phaeoclavulina abietina (Pers.) Giachini, Calocybe naucoria (Murrill) Singer)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 1621 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166388-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kmd5xc
title: Occurrence Download

description: A dataset containing 1411 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Scolopendra subspinipes Leach, 1815"
 ]
}

 The dataset includes 1411 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005290-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4skcc
title: Occurrence Download

description: A dataset containing 87596 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Veronica anagallis-aquatica L."
 ]
}

 The dataset includes 87596 records from 1148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013363-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wsx3t
title: Occurrence Download

description: A dataset containing 448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caryota urens L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 448 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035228-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fq9skk
title: Occurrence Download

description: A dataset containing 9972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cassytha filiformis L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 9972 records from 319 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035230-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lvuays
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005468-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kd1b27
title: Occurrence Download

description: A dataset listing the 681 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus Latreille, 1802"
 ]
}

 The dataset's 681 records were derived from 801 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005370-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12804641
title: Cell features for "Datasets for "Predicting microsatellite instabilitiy from histology images with a three-level hierarchical graph fusion model""

description: This repository contains features and corresponding coordinates of cells extracted from 430 and 326 histologic images from patients with colorectal and gastric cancers from the TCGA cohort (original whole section SVS images are freely available at https://portal.gdc.cancer.gov/). All images in this library are from formalin-fixed paraffin-embedded (FFPE) diagnostic sections (“DX” on the GDC Data Portal). This blog explains this in detail: http://www.andrewjanowczyk.com/download-tcga-digital-pathology-images-ffpe/

Preprocessing.

All SVS slices were pre-processed as follows.

According to “Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer” these histology images were categorized into “MSS” (microsatellite stable) or “MSIMUT” (microsatellite unstable or highly mutated) and corresponded to the article dividing the training and test sets.

The features of all cells were extracted by Hovernet and Transnuseg at 40x objective magnification for extraction masking and further feature extraction
DOI: 10.5281/zenodo.12804642
title: Cell features for "Datasets for "Predicting microsatellite instabilitiy from histology images with a three-level hierarchical graph fusion model""

description: This repository contains features and corresponding coordinates of cells extracted from 430 and 326 histologic images from patients with colorectal and gastric cancers from the TCGA cohort (original whole section SVS images are freely available at https://portal.gdc.cancer.gov/). All images in this library are from formalin-fixed paraffin-embedded (FFPE) diagnostic sections (“DX” on the GDC Data Portal). This blog explains this in detail: http://www.andrewjanowczyk.com/download-tcga-digital-pathology-images-ffpe/

Preprocessing.

All SVS slices were pre-processed as follows.

According to “Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer” these histology images were categorized into “MSS” (microsatellite stable) or “MSIMUT” (microsatellite unstable or highly mutated) and corresponded to the article dividing the training and test sets.

The features of all cells were extracted by Hovernet and Transnuseg at 40x objective magnification for extraction masking and further feature extraction
DOI: 10.15468/dl.apd7c4
title: Occurrence Download

description: A dataset containing 8212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Casuarina equisetifolia L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 8212 records from 323 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035231-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5fr3w
title: Occurrence Download

description: A dataset containing 3732228 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Anas acuta Linnaeus, 1758)"
 ]
}

 The dataset includes 3732228 records from 1200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035227-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17876/musewide/dr.1/10497
title: Object GUO_ID 10497 in candels-cdfs-25

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.17876/musewide/dr.1/10498
title: Object GUO_ID 10498 in candels-cdfs-33

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.