cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13237076.v2
title: DepMap 20Q4 Public

description: This dataset contains the results of Avana library CRISPR-Cas9 genome-scale knockout (prefixed with Achilles) as well as mutation, copy number and gene expression data (prefixed with CCLE) for cancer cell lines as part of the Broad Institute’s Cancer Dependency Map project. We have repackaged our fileset to include all quarterly-updating datasets produced by DepMap.<br>The Avana CRISPR-Cas9 genome-scale knockout data has expanded to include 808 cell lines, the RNAseq data includes 1376 cell lines, and the copy number data includes 1753 cell lines. Please see the README files for details regarding data processing pipeline procedures updates.<br>As our screening efforts continue, we will be releasing additional cancer dependency data on a quarterly basis for unrestricted use. For the latest datasets available, further analyses, and to subscribe to our mailing list visit https://depmap.org.<br>Descriptions of the experimental methods and the CERES algorithm are published in http://dx.doi.org/10.1038/ng.3984. Some cell lines were process using copy number data based on the Sanger Institute whole exome sequencing data (COSMIC: http://cancer.sanger.ac.uk.cell_lines, EGA accession number: EGAD00001001039) reprocessed using CCLE pipelines. A detailed description of the pipelines and tool versions for CCLE expression can be found here: https://github.com/broadinstitute/gtex-pipeline/blob/v9/TOPMed_RNAseq_pipeline.md.<br>v2 changes: The README file in version 1 for the Expression pipeline. Version 2 corrects this.
DOI: 10.6084/m9.figshare.14750652.v1
title: Data and Code to replicate analysis on passerine diversification across elevation

description: Data and Code to replicate analysis on passerine diversification across elevation
DOI: 10.6084/m9.figshare.25326385.v1
title: Supplementary material nr. 3

description: Supplementary material nr. 3 for research involving LLM and generating clinical score sheets for preclinical in vivo studies.
DOI: 10.15468/dl.zr3f5d
title: Occurrence Download

description: A dataset containing 3611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Phyla nodiflora (L.) Greene",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 3611 records from 237 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013149-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/4mn2g8cnsf
title: IIITDMJ_Smoke

description: In view of the scarcity of satellite image datasets for smoke classification under normal and challenging environment, 'IIITDMJ Smoke' dataset was collected that contains satellite images from MODIS satellite. The dataset consists of 23, 644 images divided into four categories: ‘smoke’, ‘non-smoke’, ‘smoke with fog’ and ‘non-smoke with fog’. Total of 4784 smoke, and 6820 non-smoke images were collected from different regions of Russia, Australia, United States, Canada, Amazon rainforest, etc.
DOI: 10.6084/m9.figshare.19350533.v2
title: Data and Code for: Genomic Signatures of Mitonuclear Coevolution in Mammals

description: All of the sequences, files, and code to necessary to reproduce the findings presented in the manuscript.<br>
DOI: 10.6084/m9.figshare.3840696.v2
title: GWAS summary statistics on Major Depressive Disorder

description: This file contains the summary statistics from genome wide association study of Major Depressive Disorder in 10,640 Han Chinese women in the CONVERGE Consortium<br>The columns are: <br>chr: ChromosomeSNP: PositionRSID: RSIDA1: Effect allele (usually minor) A2: Other allele (usually major)FRQ: frequency of effect allele OR: Odds ratio from logistic regression (with 10 PCs as covariates)SE: Standard error of ORP: P value of association from logistic regressionfrq_1kgp: Minor allele frequency at this locus in 1000 Genomes Phase 1 ASN hwe_p: P value for HWE info: Imputation information score at this locus <br>Note: This page has been updated to provide summary stats from logistic regression as odds ratios from logistic regression have proven to be more useful and less prone to ascertainment bias in a number of downstream analyses such as heritability and genetic correlation estimation. This is particularly the case for ascertained case-control data like CONVERGE. Previous summary stats from FastLMM are removed from this site to prevent confusion, but can be requested through email. The P values of association between the two sets are comparable (see Cai et al, Nature 2015 for details). <br>
DOI: 10.17632/tyy7jrth6y
title: Datacost Fusion: Big Data-Driven Efficiency for Production and Advertising

description: This dataset used in this study encompasses a comprehensive collection of records detailing production and advertising.

Key Attributes:
Clustering data
Date: Timestamp of each record, allowing for temporal analysis.
Product_ID: Unique identifier for each product.
Production_Quantity: Number of units produced on each day.
Advertising_Channel: The medium used for advertising (e.g., social media, television, print).
Ad_Spend: Amount of money spent on advertising for each channel.
Sales: Number of units sold per day.
Customer_Demographics: Information on customer segments, including age, gender, and location.
Page_Views: Number of page views generated by the advertisement.
Clicks: Number of clicks on the advertisements.
Data Preprocessing:
To prepare the dataset for analysis, several preprocessing steps were undertaken:

Data Cleaning: Removal of duplicate entries and handling of missing values through imputation.
Normalization: Scaling of numerical features to ensure uniformity.
Categorical Encoding: Conversion of categorical variables (e.g., Advertising_Channel) into numerical format using one-hot encoding.
Usage in Study:
This dataset facilitated the development and validation of our budget allocation algorithms and predictive models. By analyzing historical performance data, we were able to derive insights into optimal budget distribution and forecast future advertising impacts on sales and production efficiency.
DOI: 10.6084/m9.figshare.13522625.v1
title: Müller_et_al_FJSP_Instances

description: Random instance sets used in the paper "An algorithm selection approach for the flexible job shop scheduling problem: choosing constraint programming solvers through machine learning" by Müller, D., Müller, M. G., Kress, D. and Pesch, E.<br>
DOI: 10.6084/m9.figshare.28828721.v3
title: <b>rfb</b><b> gene in virulence and ecological fitness of </b><b>Aeromonas dhakensis </b><b>C4-1</b>

description: <i>Aeromonas dhakensis</i> is a rare aquatic pathogen can cause crocodile bacteremia with high mortality, but the pathogenesis of the species remains unclear. The aim of this study is to describe the virulence of C4-1, a high virulent isolate of <i>A. dhakensis</i> from crocodiles by comprehensive genomic annotation. A unique virulence gene, <i>rfb</i> (ctg_00167) was identified from C4-1 via comparative genomic analysis with the isolates of <i>A. dhakensis</i> from the other aquatic animals, which encodes an NAD-dependent epimerase critical for lipopolysaccharide (LPS) biosynthesis, a key factor in immune evasion and pathogenicity.
DOI: 10.6084/m9.figshare.4205226.v4
title: Photo-Identification Catalogue of Norwegian killer whales 2007-2021

description: The identification catalogue presents an overview of individual killer whales identified between 2007 and 2021 in Norwegian coastal and offshore waters.<br>
DOI: 10.17632/fp46m4gvps
title: A Semiotics Analysis Found on Music Video of You Belong with Me by Taylor Swift

description: This research entitles “A Semiotics Analysis Found on Music Vidio of You Belong with Me”.The aim of this research was to investigate and analyze the verbal and visual signs and the meaning itself in the music video of “You Belong with Me” by Taylor Swift. The type of this research was qualitative research. In collecting data, the writer used the method of observation and documentation by classifying videos into pictures in the form of sequences.The results of this study indicate that the semiotic signs contained in this music video are in the form of visual displays contained in body language in the music video which tells about a male friend that Swift likes who actually has a lover, and verbal signs contained in the music video is a paper that contains writing that is used to communicate. Based on the result of the analysis,it can be concluded as there are two classifications,namely: verbal sign and visual sign. In verbal sign, it was found eight data. In visual sign, it was found seven data. The concept of music video of You Belong With Me describe someone who is in love with someone where that person has been with a lover who doesn't appreciate it at all. In the data found, verbal and visual sign explained about caring, disappointment, jealousy, and express feelings.
DOI: 10.17632/nnmg5v5rjt
title: Data regarding classical eyeblink conditioning in mouse treated with metabotropic glutamate receptor 1 antagonist JNJ16259685.

description: We present  data on whether  JNJ16259685, a selective antagonist of mGlu1 receptor, affects cerebellum-dependent motor learning in the wild-type mice (C57BL/6J strain) . Two-month-old wild-type (C57/BL6J) mice were performed in delay eyeblinik conditioning by administered PBS (control group; n = 11) or JNJ16259685 (10 mg/kg/day, s.c.; Treated group; n = 11) 30 min before the each training session.
Raw data from individual mice on conditioned response (CR) rate (Table 1), CR peak latency (Table 2), CR onset latency  (Table 3), and eyelid electromyography (EMG)  (Table 4) were presented in detail for each group.
DOI: 10.17632/w4vcz2434r
title: Phospholipid acyl chain diversity controls the tissue-specific assembly of mitochondrial cardiolipins

description: Supplementary datasets for the publication "Phospholipid acyl chain diversity controls the tissue-specific assembly of mitochondrial cardiolipins "
DOI: 10.6084/m9.figshare.3803172.v1
title: Supplementary Material for: Thyroid Function and High-Sensitivity C-Reactive Protein in Cross-Sectional Results from the Brazilian Longitudinal Study of Adult Health (ELSA-Brasil): Effect of Adiposity and Insulin Resistance

description: <i>Background:</i> Subclinical hypothyroidism (SCH) is associated with an increased cardiovascular risk, but little information is available about its association with high-sensitivity C-reactive protein (hs-CRP). <i>Objectives:</i> This study aims to analyze the association between SCH and hs-CRP using baseline data from the Brazilian Longitudinal Study of Adult Health (ELSA-Brasil). <i>Methods:</i> The study has a cross-sectional design. We included subjects with normal thyroid function (thyroid-stimulating hormone, TSH, 0.4-4.0 μIU/ml and normal free thyroxine, fT4, 10.3-24.45 pmol/l) and SCH (TSH &gt;4.0 μIU/ml and normal fT4) who were evaluated for hs-CRP. We excluded individuals on medications that affect thyroid function and those who had prevalent cardiovascular disease. Multivariate linear regression evaluated hs-CRP and TSH as continuous variables, and logistic regression models assessed hs-CRP ≥19.05 nmol/l as the dependent variable and crescent quintiles of TSH as the independent variables adjusted for demographic and cardiovascular risk factors. <i>Results:</i> We included 12,284 subjects with a median age of 50 years (interquartile range = 45-57); 6,408 (52.2%) were female, 11,589 (94.3%) were euthyroid, and 695 (5.7%) had SCH. Bivariate analyses of participants stratified into quintiles of TSH revealed differences according to hs-CRP but not the Framingham risk score. The fifth quintile of TSH was not associated with elevated hs-CRP, odds ratio = 1.11 (95% confidence interval = 0.98-1.26), p = 0.102, in a fully adjusted logistic model, also consistent with the linear model (β = 0.024, p = 0.145). <i>Conclusions:</i> TSH is not associated with hs-CRP. Obesity and insulin resistance are very important confounders in the study of the association between SCH and hs-CRP.
DOI: 10.17632/7pdyztxr73
title: Data on Sentiment Analysis of determinant factors for Airbnb accommodation by Continents

description: Airbnb is a peer-to-peer accommodation website in the sharing economy. Sentiment analysis is to identify expressions in a text to determine polarity. Intrigued by how natural language influences consumer’s choice, this study aims to examine how consumer’s contexts differ across different geographical area. A total of 8740 tweets were collected in a period of 1 month (March to April 2019) from Twitter Archiver and are classified under 6 continents; Africa, Asia, Europe, North America, South America and Oceania. Tweets were analyzed and assisted with the corpus analysis tool, WMatrix. Our main goal is to test the 8 motivations and also address the gap of existing literatures, who tend to ignore the importance of culture in choosing accommodation. Findings confirm that Airbnb users tend to consider motivations like price, social interaction, location, opinion, materialism, photo, demographic and communication while choosing Airbnb accommodation. Surprisingly, Animals (dogs, cats) and cultural differences were also identified as a strong motivation for certain users. Yet, negative sentiment from tweets was mostly caused by noise. Our results give an insight to Airbnb hosts in order to analyze their current market situation and improve their revenue. The paper also shows imperative motivations that hosts might need to consider in a guideline prototype.
DOI: 10.25403/upresearchdata.14160593.v1
title: An assessment of indoor environmental performance of rooftop greenhouses in South Africa: a call for improved design solutions

description: These are basic environmental measures of rooftop greenhouses, documented in 2019 and 2020. The measures include Ambient temperatures, Globe Temperatures, and Relative Humidity.
DOI: 10.6084/m9.figshare.17303789.v1
title: SEM.rar

description: Structural Equation Modeling <br>
DOI: 10.6084/m9.figshare.9250508.v1
title: Drugs to prevent fractures in postmenopausal women

description: Supplementary files for a network meta-analysis
DOI: 10.17632/5583hf2fxn
title: Cyberbullying and its effects

description: Cyberbullying is a form of bullying that takes place online or through digital communication platforms. It involves the use of technology, such as social media, messaging apps, or online forums, to harass, intimidate, or harm individuals. Cyberbullying can have severe negative effects on the victims, as well as on bystanders and the bullies themselves.
DOI: 10.17632/j7cncgsvr5
title: Public Speaking Anxiety

description: Public speaking anxiety VR project raw data
DOI: 10.17632/p55vhxcpgz
title: Data for：Tectonic evolution and paleo-position of the Baoshan and Lincang blocks of West Yunnan during the Paleozoic

description: In order to reveal the paleogeography and tectonic affinity of Baoshan and Lincang blocks during the Paleozoic, We presented new detrital zircon U-Pb and Hf isotopic results of detrital zircons from the Paleozoic (mata-)sedimentary rocks within the Baoshan and Lincang blocks. Meanwhile, we compiled lot of geochronological and geochemical data of Cambrian-Ordovician and Silurian-Devonian arc-liked igneous rocks along the East Gondwana margin. We also summarized some geochronological data of C-P1 mantle plume-related basalts around the North Gondwana margin.
DOI: 10.6084/m9.figshare.22229827.v1
title: Numerical source data for "Definitive Endodermal Cells Supply an in vitro Source of Mesenchymal Stem/Stromal Cells”

description: Numerical source data for RT-qPCR, flow cytometry, mouse weight, ELISA assay and mouse colon length. <br> <br>
DOI: 10.6084/m9.figshare.28287992.v1
title: Supplementary Material for: Long term abdominal drains as a therapeutic option in refractory ascites – a systematic review

description: Introduction: Refractory ascites (RA) is the most common complication of end-stage liver disease (ESLD) with a significant burden in terms of symptoms and overall quality of life (QoL). There are limited therapeutic options available for this population and most ultimately undergo serial large-volume paracentesis (LVP). Long-term abdominal drains (LTAD) are commonly used for malignant ascites drainage but not for ascites related to ESLD, due to concerns about kidney injury and infection. 
Objectives: This review aims to describe the safety, effectiveness, and impact on the QoL of LTAD in ESLD-related ascites.
Methods: Using systematic review methodology, PubMed-MEDLINE, Embase and Google Scholar databases were searched for studies published between January 1, 2001, to June 1, 2024, combining medical subject headings (MeSH) [(«cirrhosis» OR «chronic liver disease») AND «refractory ascites» AND («permanent-tunneled peritoneal catheter» OR «tunneled catheter» OR «indwelling catheter» OR «long-term abdominal drains»)]. Inclusion and exclusion criteria were applied to the results.
Results: One hundred thirty-nine studies were identified, with 16 deemed eligible for final analysis, including three randomized clinical trials. The studies varied in design, included different types of LTAD, and were generally of low quality, with many lacking statistical power due to small sample sizes. In terms of effectiveness, technical success was 100%, and as long as LTAD remains in situ, no need for additional LVP is required. Overall, the catheters remained in situ for periods ranging from 3 to 436 days. In terms of safety, kidney injury occurred in 17 to 50% of patients, but only if &gt;1.5 liters/day were drained. Infections including cellulitis and peritonitis, occurred in 7 to 58% of patients and were generally resolved with antibiotic therapy and/or device removal. LTAD do not appear to have a negative impact on mortality. Regarding QoL, the data are contradictory with most studies reporting an overall neutral effect. 
Conclusion: LTAD should be considered as an option in RA from ESLD in the future, but more quality studies are needed to confirm their safety and benefits in controlling symptoms. This could be an important step in terms of improving the palliative needs of this population.
DOI: 10.6084/m9.figshare.9791366.v2
title: Table S1 from Fluctuating fortunes: genomes and habitat reconstructions reveal global climate-mediated changes in bats' genetic diversity.

description: Details of raw genome data, sampling, diet, forearm length and body mass for each study species
DOI: 10.6084/m9.figshare.1301044.v1
title: Subsyndromal states in bipolar disorder

description: Background: Despite adequate treatment, patients with bipolar disorder suffer from subsyndromal symptoms. This study has been done to see the association of subsyndromal symptoms with age of onset, duration of illness, duration of episodes, and number of episodes.<br>Aims: To know the prevalence of subsyndromal symptoms and their relationship with age of onset, total duration of illness, number of episodes, and duration of episodes in patients with bipolar disorder in remission.<br>Materials and Methods: The study was cross sectional and hospital based. One hundred patients, aged between 18 and 65 years, diagnosed as bipolar disorder according to Research Diagnostic Criteria of ICD-10, and with good compliance with the prophylactic medications, score of ≤5 on Beck's Mania Rating Scale (BMRS) and score ≤8 on Hamilton Depression Rating Scale (HDRS) were recruited by the purposive sampling method. Descriptive statistics were used to describe various sample characteristics. Group differences for categorical variables were examined with the chi-square test, whereas an independent 't' test was used for continuous variables.<br>Results: The most common manic symptom was a decrease in sleep (49%), followed by an increase in verbal activity (39%), hostility (37%), and increase in motor activity (33.33%). The subsyndromal manic group had a lower age of onset (58.8%), males (82.4%), unemployed (23.5%), educated (80.4%). There was no significant difference between with and without subsyndromal mania groups with respect to age, age of onset, duration of illness, number of episode, and average duration of episode.<br>Conclusion: Subsyndromal manic symptoms are prevalent and have no relationship with current age, age of onset of illness, duration of illness, number of episode, and average duration of illness in patient with bipolar disorder in remission.
DOI: 10.6084/m9.figshare.14933340.v1
title: Supplementary data for Long et al 2021

description: supplementary figure and legend, table of guides and primers used, and interactive excel spreadsheets with gene expression data