cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1637151.08fu
title: SH1637151.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1637152.08fu
title: SH1637152.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25549/one-c4-22994
title: ONE, Inc. promotional materials (1973)

description: ONE, Inc. promotional materials, including event fliers, direct mail, brochures, and press releases (1973). Includes documents related to Los Angeles Police Chief Edward Davis, the film ONE Adventure, and tours of Asia and Mexico.
DOI: 10.15156/bio/sh1637153.08fu
title: SH1637153.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1637154.08fu
title: SH1637154.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.26808435
title: Effect of fractional picosecond laser therapy using a diffractive optical lens on histological tissue reaction

description: Fractional ablative resurfacing techniques are preferred treatments for facial rejuvenation of aged skin. This study was performed to investigate the cutaneous effects of using a fractional picosecond laser at 1064 nm with a diffractive lens. The penetration depth according to the location of the handpiece tip was evaluated using an acrylic panel. Laser induced optical breakdown (LIOB) and cutaneous damage were observed after hematoxylin and eosin staining in guinea pigs. Collagen formation was evaluated using Victoria staining, Masson’s trichrome (MT) staining, and immunohistochemical staining for collagen type III. The penetration depth for LEVEL 1 was 499.98–935.23 μm (average: 668.75 ± 182.84 μm); the LIOB cavity area was 1664.17 ± 650.52 μm<sup>2</sup>. The penetration depth of LEVEL 2 was 257.12–287.38 μm (average: 269.77 ± 14.55 μm) with an LIOB cavity area of 1335.85 ± 214.41 μm<sup>2</sup>. At LEVEL 3, that was 36.17–53.69 μm (average: 52.15 ± 20.81 μm) and the LIOB cavity area was 1312.67 ± 1069.12 μm<sup>2</sup>. No epidermal tissue damage was observed and collagen formation was observed from day 14 under all conditions. Diffractive optical element (DOE) lens arranged laser treatment system controlled the position of LIOB occurrence and an irradiating area.
DOI: 10.6084/m9.figshare.26808435.v1
title: Effect of fractional picosecond laser therapy using a diffractive optical lens on histological tissue reaction

description: Fractional ablative resurfacing techniques are preferred treatments for facial rejuvenation of aged skin. This study was performed to investigate the cutaneous effects of using a fractional picosecond laser at 1064 nm with a diffractive lens. The penetration depth according to the location of the handpiece tip was evaluated using an acrylic panel. Laser induced optical breakdown (LIOB) and cutaneous damage were observed after hematoxylin and eosin staining in guinea pigs. Collagen formation was evaluated using Victoria staining, Masson’s trichrome (MT) staining, and immunohistochemical staining for collagen type III. The penetration depth for LEVEL 1 was 499.98–935.23 μm (average: 668.75 ± 182.84 μm); the LIOB cavity area was 1664.17 ± 650.52 μm<sup>2</sup>. The penetration depth of LEVEL 2 was 257.12–287.38 μm (average: 269.77 ± 14.55 μm) with an LIOB cavity area of 1335.85 ± 214.41 μm<sup>2</sup>. At LEVEL 3, that was 36.17–53.69 μm (average: 52.15 ± 20.81 μm) and the LIOB cavity area was 1312.67 ± 1069.12 μm<sup>2</sup>. No epidermal tissue damage was observed and collagen formation was observed from day 14 under all conditions. Diffractive optical element (DOE) lens arranged laser treatment system controlled the position of LIOB occurrence and an irradiating area.
DOI: 10.6084/m9.figshare.26808520
title: Supplementary table

description: Gastrointestinal diseases in weaned piglets frequently cause high morbidity and mortality in domestic pigs. The use of antibiotics is problematic due to increasing antibiotic resistence in bacterial populations, making probiotics highly recommended for maintaining animal health. In this study, 57 strains of biologically safe lactic acid bacteria (LAB) and bifidobacteria from the gastrointestinal tract (GIT) of pigs were identified and characterized in terms of their probiotic properties for potential use in weaned piglets. These strains were divided into two sets based on their origin – from wild boars (n=41) and domestic pigs (n=16). Strains obtained from wild boars exhibited greater taxonomic diversity compared to isolates from domestic pigs. While searching for coding sequences (CDS) encoding bacteriocins and bile salt hydrolases (BSH), no significant difference was detected between the two tested groups. On the other hand, CDS encoding adhesin-like factors and carbohydrate-active enzymes (CAZymes) were more frequent in wild boar strains. Utilization of important carbohydrates like starch, D-raffinose, D-mannose, D-cellobiose, and gentiobiose was confirmed by API testing. Antimicrobial activity against at least one out of five tested pathogens was found in 51% of wild boar strains, but none from domestic pigs. This suggests the intestinal microbiota of wild boars could serve as a promising source of probiotics for domestic pigs.
DOI: 10.6084/m9.figshare.26808520.v1
title: Supplementary table - <b><i>In vitro</i></b><b> Selection of Lactic Acid Bacteria and Bifidobacteria from the Digestive Tract of Wild and Domestic Pigs: Potential Probiotic Candidates for Post-weaning Piglets</b>

description: Gastrointestinal diseases in weaned piglets frequently cause high morbidity and mortality in domestic pigs. The use of antibiotics is problematic due to increasing antibiotic resistence in bacterial populations, making probiotics highly recommended for maintaining animal health. In this study, 57 strains of biologically safe lactic acid bacteria (LAB) and bifidobacteria from the gastrointestinal tract (GIT) of pigs were identified and characterized in terms of their probiotic properties for potential use in weaned piglets. These strains were divided into two sets based on their origin – from wild boars (n=41) and domestic pigs (n=16). Strains obtained from wild boars exhibited greater taxonomic diversity compared to isolates from domestic pigs. While searching for coding sequences (CDS) encoding bacteriocins and bile salt hydrolases (BSH), no significant difference was detected between the two tested groups. On the other hand, CDS encoding adhesin-like factors and carbohydrate-active enzymes (CAZymes) were more frequent in wild boar strains. Utilization of important carbohydrates like starch, D-raffinose, D-mannose, D-cellobiose, and gentiobiose was confirmed by API testing. Antimicrobial activity against at least one out of five tested pathogens was found in 51% of wild boar strains, but none from domestic pigs. This suggests the intestinal microbiota of wild boars could serve as a promising source of probiotics for domestic pigs.
DOI: 10.6084/m9.figshare.26808520.v2
title: Supplementary table

description: Gastrointestinal diseases in weaned piglets frequently cause high morbidity and mortality in domestic pigs. The use of antibiotics is problematic due to increasing antibiotic resistence in bacterial populations, making probiotics highly recommended for maintaining animal health. In this study, 57 strains of biologically safe lactic acid bacteria (LAB) and bifidobacteria from the gastrointestinal tract (GIT) of pigs were identified and characterized in terms of their probiotic properties for potential use in weaned piglets. These strains were divided into two sets based on their origin – from wild boars (n=41) and domestic pigs (n=16). Strains obtained from wild boars exhibited greater taxonomic diversity compared to isolates from domestic pigs. While searching for coding sequences (CDS) encoding bacteriocins and bile salt hydrolases (BSH), no significant difference was detected between the two tested groups. On the other hand, CDS encoding adhesin-like factors and carbohydrate-active enzymes (CAZymes) were more frequent in wild boar strains. Utilization of important carbohydrates like starch, D-raffinose, D-mannose, D-cellobiose, and gentiobiose was confirmed by API testing. Antimicrobial activity against at least one out of five tested pathogens was found in 51% of wild boar strains, but none from domestic pigs. This suggests the intestinal microbiota of wild boars could serve as a promising source of probiotics for domestic pigs.
DOI: 10.15468/dl.tjknug
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Varanus jobiensis Ahl, 1932",
 "Year 2004-2024"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077988-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84exdn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "Geometry POLYGON((74.45347 -49.90559,226.54653 -49.90559,226.54653 10.90559,74.45347 10.90559,74.45347 -49.90559))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Brachyorrhos albus Boulenger, 1893",
 "Year 2004-2024"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077990-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48366/r724496
title: A Comparison of Scientific Publications on the State of Empirical Research in Requirements Engineering and Software Engineering

description: This comparison provides an overview of scientific publications that have investigated primary studies in requirements engineering and software engineering to give a snapshot of the "current" state of empirical research in requirements engineering and software engineering. In particular, the comparison shows for each publication (1) which research fields and topics were investigated, (2) whether and where the extracted and analyzed data is available, and (3) which method was used to determine the state, including further details about the respective method.
DOI: 10.15468/dl.quj6qs
title: Occurrence Download

description: A dataset containing 284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron przewalskii Maxim."
 ]
}

 The dataset includes 284 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077991-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9225642
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.15468/dl.5wunfd
title: Occurrence Download

description: A dataset containing 101480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Artportalen, Pl@ntNet automatically identified occurrences)",
 "TaxonKey is Araceae"
 ]
}

 The dataset includes 101480 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077981-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13361460
title: ENDGAME - Laboratory Experiment 2024-01-17 Exp. 025 - High Speed Camera data

description: Shock-tube experiments in combination with high speed Schlieren shadow photography. 

The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of small particles. We adopted pipes an inner diameter of 4 cm and different lengths (20, 30 and 80 cm). We also considered different volumes of pressurized gas (~650 cm3 and ~1550 cm3). A pressure sensor has been placed at the vent of the conduit to record pressure variations during experiments. Images from the high speed camera were collected at a frame rate of 30000 fps.

When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.
DOI: 10.5281/zenodo.13361461
title: ENDGAME - Laboratory Experiment 2024-01-17 Exp. 025 - High Speed Camera data

description: Shock-tube experiments in combination with high speed Schlieren shadow photography. 

The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of small particles. We adopted pipes an inner diameter of 4 cm and different lengths (20, 30 and 80 cm). We also considered different volumes of pressurized gas (~650 cm3 and ~1550 cm3). A pressure sensor has been placed at the vent of the conduit to record pressure variations during experiments. Images from the high speed camera were collected at a frame rate of 30000 fps.

When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.
DOI: 10.5281/zenodo.832994
title: Data from: Acoustic and higher-level representations of naturalistic auditory scenes in human auditory and frontal cortex

description: This data set was analysed for the publication "Acoustic and higher-level representations of naturalistic auditory scenes in human auditory and frontal cortex" by Lars Hausfeld, Lars Riecke and Elia Formisano (10.1016/j.neuroimage.2018.02.065). Anatomical and functional MRI was acquired at 7 Tesla and over the course of 3 sessions for each participant. Participants listened to natural auditory scenes consisting of three sound sources: voice, instrument and pure tone. To reveal effects of selective attention, participants were asked to listen to one of the three sources by performing a task.  


The dataset is arranged as follows:


- MRI data for each participant are contained in the participant-specific folders S[participant id]_MRIdata.zip


- Information and design, stimulation protocols and sounds are contained in DesignProtocolsSounds.zip


- README files contain necessary information on the MRI acquisition, experimental design and the coding of conditions


 


Please note additional information in the original publication


 


Abstract of corresponding manuscript


In everyday life, we are often confronted with auditory scenes comprising multiple simultaneous sounds. When listening to two simultaneous talkers, the neural representation of the attended talker is selectively enhanced in auditory cortex. However, it remains unknown whether and how this selective attention mechanism operates on representations of different natural sound categories. In this high-field fMRI study we presented participants with simultaneous voices and musical instruments while manipulating their focus of attention. We found an attentional enhancement of neural sound representations in temporal cortex at locations that depended on the attended category (i.e., voices or instruments). In contrast, we found that in frontal cortex the site of enhancement was independent of the attended category and the same regions could flexibly represent any attended sound regardless of its category. These results are relevant to elucidate the interacting mechanisms of bottom-up and top-down processing during real-life audition.


 


Author contact: lars.hausfeld@maastrichtuniversity.nl
description: We thank Peter de Weerd, Niels Disbergen and Martha Shiell for discussions on the experimental setup, Federico De Martino for support with data acquisition, Milene Bonte, Inge Timmers and Tahnée Engelen for help with sound creation, Giancarlo Valente and João Correia for support on statistical testing. This work was supported by Maastricht University and the Netherlands Organization for Scientific Research (NWO; VICI grant 435-12-002 to E.F.).
DOI: 10.5281/zenodo.832995
title: Data from: Acoustic and higher-level representations of naturalistic auditory scenes in human auditory and frontal cortex

description: This data set was analysed for the publication "Acoustic and higher-level representations of naturalistic auditory scenes in human auditory and frontal cortex" by Lars Hausfeld, Lars Riecke and Elia Formisano (10.1016/j.neuroimage.2018.02.065). Anatomical and functional MRI was acquired at 7 Tesla and over the course of 3 sessions for each participant. Participants listened to natural auditory scenes consisting of three sound sources: voice, instrument and pure tone. To reveal effects of selective attention, participants were asked to listen to one of the three sources by performing a task.  


The dataset is arranged as follows:


- MRI data for each participant are contained in the participant-specific folders S[participant id]_MRIdata.zip


- Information and design, stimulation protocols and sounds are contained in DesignProtocolsSounds.zip


- README files contain necessary information on the MRI acquisition, experimental design and the coding of conditions


 


Please note additional information in the original publication


 


Abstract of corresponding manuscript


In everyday life, we are often confronted with auditory scenes comprising multiple simultaneous sounds. When listening to two simultaneous talkers, the neural representation of the attended talker is selectively enhanced in auditory cortex. However, it remains unknown whether and how this selective attention mechanism operates on representations of different natural sound categories. In this high-field fMRI study we presented participants with simultaneous voices and musical instruments while manipulating their focus of attention. We found an attentional enhancement of neural sound representations in temporal cortex at locations that depended on the attended category (i.e., voices or instruments). In contrast, we found that in frontal cortex the site of enhancement was independent of the attended category and the same regions could flexibly represent any attended sound regardless of its category. These results are relevant to elucidate the interacting mechanisms of bottom-up and top-down processing during real-life audition.


 


Author contact: lars.hausfeld@maastrichtuniversity.nl
description: We thank Peter de Weerd, Niels Disbergen and Martha Shiell for discussions on the experimental setup, Federico De Martino for support with data acquisition, Milene Bonte, Inge Timmers and Tahnée Engelen for help with sound creation, Giancarlo Valente and João Correia for support on statistical testing. This work was supported by Maastricht University and the Netherlands Organization for Scientific Research (NWO; VICI grant 435-12-002 to E.F.).
DOI: 10.5281/zenodo.13361493
title: Dataset for 2AFC experiment in Correspondence Orkzili-Cicchini
DOI: 10.5281/zenodo.13361494
title: Dataset for 2AFC experiment in Correspondence Orkzili-Cicchini