cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/kt8fz8mrt9.2
title: Measurement data from sample plots characterizing three development stages of a subalpine spruce forest and describing the bird assemblages associated with them

description: Data on the characteristics of tree stands as well as the birds inhabiting them in the breeding and nonbreeding seasons were collected from a subalpine spruce forest in the Gorce National Park (Western Carpathians, Poland). Stand measurements were conducted on a total of 24 sample plots, with 8 plots established in each of the three studied forest development stages (mature, break-up, and growing-up) selected to represent successive phases of subalpine forest development. The study area designated for each stage was 30 ha. The three study areas exhibited development properties resulting from both biotic and abiotic factors. Tree stands were characterized in terms of the tree layer, saplings, and deadwood. The types of deadwood measured were: standing entire dead trees, snags, stumps, and downed deadwood. In the case of birds, the data included species composition and pair density in the breeding season or individual bird density in the nonbreeding season. Data on bird density are included in the article of the same title in the journal Data in brief in 2020. This article also includes data collection methodology.
DOI: 10.17632/2pk3kwyk4h.1
title: E-learning app Usability test (Subjective study)

description: The subjective test When the satisfaction questionnaire was used, participants were asked to rate the 64 items related to the interface design of educational apps with a 5-point Likert scale that range from 1 for Not at all true,2 for Not very true,3 for Somewhat True, 4 for True to 5 For Very True. And In accordance with the SUMI measuring criteria, each point weighs Zero for not true at all, 1 point for Not very true, 2 points for somewhat true, 3 points for True and 4 points for Very true. The questionnaire design ensured that the research findings thereof were converted from the subjective qualitative nature to quantitative data through coding using a five-point Likert scale and then analyzed using statistical package for social scientists (SPSS)
DOI: 10.17632/cy9m8jdtfp.1
title: E-learning App Usability (objective dataset)

description: As suggested by Nigel Bevan 2006, a minimum number of eight to ten participants are generally required in order to make reliable estimates to uncover the usability problems of an interface, a total of 13 respondents were employed in this test. Before usability testing a consent form was signed by respondents to participate in the study. All participants were required to complete 12 tasks with the app. The participants were given time to freely explore the application before completing the tasks. The participants were given a brief introduction in the start regarding the purpose of the study. Tasks were developed using objective metrics in order to collect objective data and questionnaire was developed using subjective metrics to obtain results for subjective measures assessing satisfaction ratings with interface design. These developed instruments can be used in usability evaluation of educational apps for learners and teachers by implementing tasks performance for objective measures and using questionnaire to assess the subjective measures. It should be noted that user satisfaction is not simply correlated with performance measures such as task completion time and grade but rather can be measured from user perceptions and attitudes towards the application. The prototype was implemented and tested where 13 respondents were chosen, and used the prototype while carrying out specified tasks to complete a list of certain activities (tasks), Thereafter, 12 tasks had to be performed by the respondent including: creating a course, enrolling in a course, changing user role, modifying a course and customizing interface. The tasks were performed while paying attention to the task list as developed in the methodology.
DOI: 10.17632/nj5yf7k3s7.1
title: Data for: ESTIMATION AND ANALYSIS OF HIGH SPATIAL RESOLUTION INVENTORIES OF ATMOSPHERIC EMISSIONS FROM SEVERAL SECTORS IN ARGENTINA

description: This data article provides an extensive and complete description of the high spatial resolution inventory (HSRI) estimation shown in the article “High resolution inventory of atmospheric emissions from livestock production, agriculture, and biomass burning sectors of Argentina” Puliafito et al. https://doi.org/10.1016/j.atmosenv.2019.117248 and its 2014 update.
DOI: 10.17632/t7cr3578vv.1
title: Source data for Manuscript

description: The source data for the Manuscript
DOI: 10.21227/d56m-b382
title: Supplementary materials of the paper titled "WILDetect: An intelligent platform to perform bird censuses automatically in maritime ecosystem"

description: Supplementary materials of the paper titled "WILDetect: An intelligent platform to perform birdcensuses automatically in maritime ecosystem"
DOI: 10.17632/56f2m8nd9h.2
title: The role of the Xist 5’ m6A region and RBM15 in X chromosome inactivation

description: X chromosome inactivation in mammals is regulated by the non-coding (nc) RNA, Xist, which represses the chromosome from which it is transcribed. High levels of the N6-methyladenosine (m6A) RNA modification occur within Xist exon I, close to the 5’ end of the transcript, and also further 3’, in Xist exon VII. The m6A modification is catalysed by the METTL3/14 complex that is directed to specific targets, including Xist, by the RNA binding protein RBM15/15B. m6A modification of Xist RNA has been reported to be important for Xist–mediated gene silencing. We use CRISPR/Cas9 mediated mutagenesis to delete sequences around the 5’ m6A region in interspecific XX mouse embryonic stem cells (mESC). Following induction of Xist RNA expression we assay chromosome silencing using allelic RNA-seq and Xist m6A patterns using m6A-seq. Additionally we use Xist RNA FISH to analyse the effect of deleting the 5’ m6A region on the function of the endogenous Xist promoter. Purifying epitope tagged RBM15, we employ MS/MS analysis to define the RBM15 interactome in mESCs. We show that a deletion encompassing the entire Xist 5’ m6A region results in a modest reduction in Xist-mediated silencing, and that the 5’ m6A region overlaps essential DNA elements required for activation of the endogenous Xist promoter. Deletion of the Xist A-repeat, to which RBM15 binds, entirely abolishes deposition of m6A in the Xist 5’ m6A region without affecting the modification in exon VII. We show that in mESCs RBM15 interacts with the m6A complex, the SETD1B histone modifying complex, and several proteins linked to RNA metabolism
DOI: 10.17632/v88xfw5wyx.1
title: Snake Toxin and Antivenom Binding Profiles – a novel tool for the investigation of interaction patterns and antivenom cross-reactivity

description: Background Snakebite envenoming is a major neglected tropical disease that affects millions of people every year. The only effective treatment against snakebite envenoming consists of unspecified cocktails of polyclonal antibodies purified from the plasma of immunized production animals. Currently, little data exists on the molecular interactions between venom toxin epitopes and antivenom antibody paratopes. To address this issue, high-density peptide microarray (hdpm) technology has recently been adapted to the field of toxinology. However, analysis of such valuable datasets requires expert understanding and, thus, complicates its broad application within the field. Results In the present study, we developed a user-friendly, and high-throughput web application named “Snake Toxin and Antivenom Binding Profiles” (STAB Profiles), to allow straight-forward analysis of hdpm datasets. To test our tool and evaluate its performance with a large dataset, we conducted hdpm assays using all African snake toxin protein sequences available in the UniProt database at the time of study design, together with eight commercial antivenoms in clinical use in Africa, thus representing the largest venom-antivenom dataset to date. Furthermore, we introduced a novel method for evaluating raw signals from a peptide microarray experiment and a data normalization protocol enabling inter-microarray and even intra-microarray chip comparisons. Finally, these data, alongside all the data from previous similar studies by Engmark et al., were preprocessed according to our newly developed protocol and made publicly available for download through the STAB Profiles web application (https://snake.shinyapps.io/STAB_Profiles/). With these data and our tool, we were able to gain key insights into toxin-antivenom interactions and were able to differentiate the ability of different antivenoms to interact with certain toxins of interest. Conclusions The data, as well as the web application, we present in this article should be of significant value to the venom-antivenom research community. Insights gained from our current and future analyses of this dataset carry the potential to guide the improvement and optimization of current antivenoms for maximum patient benefit, as well as aid the development of next generation antivenoms.
DOI: 10.17632/h8zx9s4mby.1
title: Data for: How CSR Really Affects Employee Misconduct: Selection-Effect and Moral Licensing
DOI: 10.17632/rm56h9msym.1
title: Localized inhibition of protein phosphatase 1 by NUAK1 promotes spliceosome activity and reveals a MYC-sensitive feedback control of transcription

description: Deregulated expression of MYC induces a dependence on the NUAK1 kinase, but the molecular mechanisms underlying this dependence have not been fully clarified. Here we show that NUAK1 is a predominantly nuclear protein that associates with a network of nuclear protein phosphatase 1 (PP1) interactors and that PNUTS, a nuclear regulatory subunit of PP1, is phosphorylated by NUAK1. Both NUAK1 and PNUTS associate with the splicing machinery. Inhibition of NUAK1 abolishes chromatin association of PNUTS, reduces spliceosome activity and suppresses nascent RNA synthesis. Activation of MYC does not bypass the requirement for NUAK1 for spliceosome activity, but significantly attenuates transcription inhibition. Consequently, NUAK1 inhibition in MYC-transformed cells induces global accumulation of RNAPII both at the pause-site and at the first exon/intron boundary, but does not increase mRNA synthesis. We suggest that NUAK1 inhibition in the presence of deregulated MYC traps non-productive RNAPII due to the absence of correctly assembled spliceosomes.
DOI: 10.17632/wndf6vdzj2.2
title: DATA COLLECTED BY COUPLING FIX AND WEARABLE SENSORS FOR ADDRESSING URBAN MICROCLIMATE VARIABILITY IN AN HISTORICAL ITALIAN CITY

description: Here are provided two different datasets: 1. a long-term monitoring of air temperature and relative humidity collected through stand-alone probes (Tinytag TGP-4500) located in two specific areas of the town; 2. a short-term, movable transects monitoring conducted on foot by means of a wearable miniaturized weather station specifically developed by the authors and designed in order to be settled upon a common bike helmet. The data are provided in two supplementary files. The microclimatic variable data are organized in an excel file composed by four datasheets. The datasheets called “Moving_transectX” are referred to the three short dynamic monitoring campaigns and each datasheet presents collected raw environmental parameters, i.e. VOC and CO2 concentration, air temperature, relative humidity, wind direction, wind speed, and global solar radiation, and the apparent temperature which is a direct thermal comfort index calculated.
DOI: 10.17632/fvtznwrgsv.1
title: Global Air Mass Climate Indicators - Warm/Cool Index and Global Extremes Index

description: The Warm/Cool Index (WCI) and the Global Extremes Index (GEI) are two climate indicators based upon air masses - multivariate weather situations (like, for example, hot and humid, or cold and dry) near Earth's surface. Both the WCI and GEI are based upon the gridded weather typing classification, version 2 (GWTC2). The GWTC2 can be cited using these two references: Lee, C.C., 2019. The gridded weather typing classification version 2: A global‐scale expansion. International Journal of Climatology. DOI: 10.1002/JOC.6263 Lee, Cameron (2020), “GWTC2 Dataset - A global-scale classification of air masses”, Mendeley Data, V1, doi: 10.17632/gbwwksnd6j.1 (http://dx.doi.org/10.17632/gbwwksnd6j.1). Also, more GWTC2 information can be found here: http://www.personal.kent.edu/~cclee/gwtc2global.html. For WCI - Higher values indicate a greater expanse of Earth's surface area covered by the hot GWTC2 air masses (HW, DW, W), relative to the cold GWTC2 air masses (HC, DC, C). Lower values are opposite. Index has been robustly standardized (using medians and IQRs) to the 1981-2010 period. For GEI - Higher values indicate a greater expanse of Earth's surface area covered by the 'extreme' GWTC2 air masses (HC, HW, DC, DW). Lower values indicate less coverage of these air masses. Index has been robustly standardized (using medians and IQRs) to the 1981-2010 period. DW - Dry Warm; HW - Humid Warm; W - Warm; C - Cool; HC - Humid Cool; DC - Dry Cool. The file below is in Microsoft Excel (.xlsx) format. There are three tabs: monthly - which is the month-by-month time series of averaged values of the daily-scale WCI and GEI, 1979-2018. daily - which is the daily-scale time series of the WCI and GEI (daily is the native temporal scale), 1979-2018 metadata - information about the data As of publication of this dataset, the research article describing it will soon be undergoing peer-review: Lee, C.C. (2020): Trends and variability in air mass frequencies: indicators of a changing climate. (Manuscript currently in peer-review).
DOI: 10.17632/gbwwksnd6j.1
title: GWTC2 Dataset - A global-scale classification of air masses

description: The GWTC2 is the Gridded Weather Typing Classification - version 2 (global domain). The GWTC2 is a system (and dataset) for defining weather types or air masses - which can be thought of as multivariate 'weather situations' (e.g. hot and humid, or cold and dry) occurring near the surface. At every 0.5-degrees of latitude and longitude (259,920 grid-points), the GWTC2 categorizes every day, from 1979-2019 (and updated regularly) into one of 11 different air masses (AMs). These AMs are both geographically- and seasonally-relative, meaning, for example, that a Humid Warm air mass can occur at any place and at any time of year (even in the winter in the polar regions), and simply signifies that the weather on that day was warmer and more humid than 'normal' (for that time of the year, and for that location). While weather types at individual locations are mostly classified independently from nearby locations, when mapped, synoptic-scale air masses can be observed (see: http://www.personal.kent.edu/~cclee/EuropeanColdAirOutbreak.gif). There are a few other weather typing classifications available, but this is the first that is available at a fine-scale, gridded, and global domain, and the first available over maritime locations. Greater detail on the methodology and development of this dataset can be found here: Lee, C.C., 2019. The gridded weather typing classification version 2: A global‐scale expansion. International Journal of Climatology. DOI: 10.1002/JOC.6263. More information can also be found here: http://www.personal.kent.edu/~cclee/gwtc2global.html, along with updated historical data and forecasts. The compressed folder below contains a CSV-formatted file for each month, 1979-2019. In each CSV file, each row is a lat/long coordinate (indicated by the first two columns), and each column is an Excel-readable date (28856 = 01-Jan-1979). All other data in each file is the AM code for each location on each day. A metadata file has also been provided to help identify the 11 different air mass types. Note that missing values are indicated with NaN or 0.
DOI: 10.17632/w46xsffbp9.2
title: Intralesional Candida antigen versus intralesional tuberculin in the treatment of recalcitrant genital warts: A comparative study

description: Treatment of genital warts using intralesional immunotherapy has been recently investigated in a few studies and showed promising efficacy and safety, and low recurrence rates as compared to traditional ablative therapies. In this study, we evaluated the efficacy and safety of intralesional Candida antigen injection versus intralesional tuberculin injection in the treatment of recalcitrant genital warts. According to the presented results, intralesional immunotherapy by Candida antigen and tuberculin seems to be a promising alternative modality for the treatment of recalcitrant multiple genital warts.
DOI: 10.18112/openneuro.ds002507.v1.0.0
title: Narratives
DOI: 10.17632/gtkk6sthtw.1
title: Raw files (Billon et al, Cell Reports, 2020)

description: Sanger sequencing files for ICE and EditR analyses Raw gel images and qPCR data for DTECT
DOI: 10.17632/jm4px98jw5.1
title: An experimental assessment of the chalcophile behavior of F, Cl, Br and I: implications for the fate of halogens during planetary accretion and the formation of magmatic ore deposits

description: Electronic Annex, compiled electron microprobe analyses of experimental run products and halogen correlation plots.
DOI: 10.17632/n6vxdhhmrz.1
title: Marine epibenthic functional diversity on Flemish Cap (northwest Atlantic)—Identifying trait responses to the environment and mapping ecosystem functions

description: Aim: To characterize the functional diversity and selected ecological functions of marine epibenthic invertebrate communities at the ecosystem scale and to evaluate the relative contributions of environmental filtering, including bottom-contact fishing, and competitive interactions to benthic community assembly. Location: Flemish Cap, an ecosystem production unit and fishing bank in the high seas of the north-west Atlantic Ocean. Methods: Through the use of Hierarchical Modelling of Species Communities (HMSC), we have explored seven community response traits to the environment applied to 105 epibenthic species and evaluated the influence of such traits on the community assembly processes. Assumed bioturbation, nutrient cycling and habitat provision functions, linked to individual or a combination of biological traits, were mapped using random forest modelling. Results: Functional richness within benthic communities reached an asymptote for trawl sets with roughly more than 30 species. Assemblages on top of the Flemish Cap (&lt;500 m depth) were characterized by higher biomass of small- and medium-sized species with short life spans, whereas large species with longer life spans and broadcast spawners were dominant in the deeper assemblages (500–1,500 m depth). The amount of variation explained by the species’ responses to the covariates mediated by the traits was relatively high (25%) indicating their relevance to community assembly. Communityweighted mean trait values changed with depth and physical oceanographic variables, indicating that environmental filtering was occurring. Interspecific interactions, as inferred from the random effect at the sample level, accounted for 16.3% of the variance in the model, while fishing effort explained only 5.2% of the variance but conferred strong negative impacts for most species. Main conclusions: Our results suggest that while bottom-contact fishing impacts have an effect on functional diversity, changes to the physical oceanography of the system are likely to have more profound impacts. The maps of benthic functioning can aid assessments of ecosystem impacts of fishing.
DOI: 10.17632/46n94n229j.1
title: Deep-sea sponge grounds enhance diversity and abundance of epibenthic megafauna in the Northwest Atlantic

description: The influence of structure-forming deep-water sponge grounds on the composition, diversity, and abundance of the local epibenthic megafaunal community of the Flemish Pass area, Northwest Atlantic was statistically assessed. These habitats are considered vulnerable marine ecosystems and, therefore, warrant conservation measures to protect them from bottom fishing activities. The epibenthic megafauna were quantified from four photographic transects, three of which were located on the western slope of the Flemish Cap with an overall depth range of 444–940 m, and the fourth in the southern Flemish Pass between 1328 and 1411 m. We observed a diverse megafaunal community dominated by large numbers of ophiuroids and sponges. On the slope of the Flemish Cap, sponge grounds were dominated by axinellid and polymastid sponges, while the deeper sponge ground in the southern Flemish Pass was formed mainly by geodiids and Asconema sp. The presence of structure-forming sponges was associated with a higher biodiversity and abundance of associated megafauna compared with non-sponge habitat. The composition of megafauna significantly differed between sponge grounds and non-sponge grounds and also between different sponge morphologies. Surface chlorophyll a and near-bottom salinity were important environmental determinants in generalized linear models of megafaunal species richness and abundance.
DOI: 10.17632/nkx7z2zfmn.2
title: Presidential election

description: Data of the study on redistributive behavior in the 2017 French presidential election
DOI: 10.6073/pasta/8d6ded9a2f120fdc84c1b08d6477ca03
title: PBB02 Belowground Plot Experiment: Biomass and nutrient content of Rhizomes

description: To address the potential interactive effects of fire, aboveground biomass removal, and nutrient amendments on above- and belowground responses, a long-term field experiment was initiated in 1986 as part of the Konza Prairie Long-Term Ecological Research (LTER) program. The general goals of this experiment are: 1) to document both short- and long-term responses of plants and soils to fire, aboveground biomass removal (a surrogate for grazing in these small plots), and nutrient amendments (additions of N and/or P); and 2) to provide a better understanding of the mechanisms underlying tallgrass prairie responses to fire, aboveground biomass removal and nutrient enrichment. Standing crops of live and dead rhizomes (0.1 sq. m2 * 20cm deep samples) are taken in late summer periodically from 64 belowground plots. N and P content are determined on live and dead rhizomes. N and P for forb rhizomes are available for some plots in some years.
DOI: 10.17632/3ycxw469p8.1
title: Verifying Object Construction replication package

description: This is the replication package for the ICSE 2020 technical paper "Verifying Object Construction". See the README.md file for instructions, including a link to a VM that can run all of this code.
DOI: 10.17632/4tkhdx4jjx.1
title: DPFSP with due dates

description: This data set is the extension of Naderi and Ruiz (2010) benchmark set for distributed permutation flowshop scheduling problem (DPFSP) with due dates. This data-set can be utilized for DPFSP with total tardiness criterion.
DOI: 10.17632/m8d27bmz2y.1
title: Data for I4 HPDC aluminum engine block

description: This data includes tensile, SDAS and cooling rate, and strain measurements for an I4 high pressure die cast aluminum engine block.
DOI: 10.17632/yxdgbwxjvf.3
title: Execução Físico-Financeira do PPA Plano Plurianual 2012-2015 do Governo do Estado do Pará

description: Execução Físico-Financeira do PPA Plano Plurianual 2012-2015 do Governo do Estado do Pará
DOI: 10.17632/yxdgbwxjvf.4
title: Execução Físico-Financeira do PPA Plano Plurianual 2012-2015 do Governo do Estado do Pará

description: Execução Físico-Financeira do PPA Plano Plurianual 2012-2015 do Governo do Estado do Pará