DOI: 10.5061/dryad.3bk3j9kpb
title: Data from: Global change in brain state during spontaneous and forced walk in Drosophila is composed of combined activity patterns of different neuron classes

description: Movement-correlated brain activity has been found across species and brain
 regions. Here, we used fast whole-brain lightfield imaging in adult
 Drosophila to investigate the relationship between walk and brain-wide
 neuronal activity. We observed a global change in activity that tightly
 correlated with spontaneous bouts of walk. While imaging specific sets of
 excitatory, inhibitory, and neuromodulatory neurons highlighted their
 joint contribution, spatial heterogeneity in walk- and turning-induced
 activity allowed parsing unique responses from subregions and sometimes
 individual candidate neurons. For example, previously uncharacterized
 serotonergic neurons were inhibited during walk. While activity onset in
 some areas preceded walk onset exclusively in spontaneously walking
 animals, spontaneous and forced walk elicited similar activity in most
 brain regions. These data suggest a major contribution of walk and
 walk-related sensory or proprioceptive information to global activity of
 all major neuronal classes.
description: See https://doi.org/10.1101/2022.01.17.476660 and https://github.com/sophie63/Aimon2022
description: Applications that can be used to access the data are Python,
 Matlab and Julia. ## File/Folder Details
 Details for: Walk_anatomical__regions.zip  
  <br>--------------------------------------- *
 Description: Time series of regional calcium activity during walk used for
 Fig. 1-3, 6SA, 7A * Format(s): .npy
 * Size(s): 176.09 MB * The identity of each
 region in the _Regions and _LargeRegions files are in the _RegionNames
 file. Files ending in Walk, Left or Right are regressors convolved by the
 GCaMP response (see manuscript methods section).
 <br>Details for:
 Walk_components.zip<br>---------------------------------------<br>* Description: Time series of pca/ica components during walk used for Fig. 4-7 * Format(s): .npy * Size(s): 186.94 MB * Component identity are in the panda GoodICsdf.pkl database (see also https://github.com/sophie63/Aimon2022). Files ending in Walk, Left or Right are regressors convolved by the GCaMP response (see manuscript methods section). <br>Details for: Additional_data.zip<br>---------------------------------------<br>* Description: Additional data for Figures and potentially useful for additional analysis. These data are less well curated than the other folders. * Format(s): .mat and .npy * Size(s): 599.36 MB * Variables<br>  * FunctionallyDefinedAnatomicalRegions folder: The anatomical regions were defined using components maps and the masks are available in the _Func_regions_masks.nii file. The name of the files start with the experimental ID (see other folders and database in https://github.com/sophie63/Aimon2022). These datasets could be useful to analyse the data with a finer resolution than regions in the Walk_anatomical_regions files, but without the problems (such as missing data) arising from the use of the components in the Walk_components folder.<br>  * AllRegressors folder contain additional behavioral regressors (Flail, Groom, walk onset: Ron, Roff, Regressors for forced walk and forced turns, in addition to walk binary regressor and direction of movement). Names also include the experiment ID (see GoodICsdf.pkl database and https://github.com/sophie63/Aimon2022), and weather it is a temporal subset of the whole experiment (e.g. in B902Forced600_1500kd, it is from the 600 to the 1500 time points). All regressors are convolved with the GCaMP kernel and the same deltaF/F procedure than for the fluorescence time series was applied. Details for: GoodICsdf.pkl<br>---------------------------------------<br>* Description: Pandas data base containing all information on the experiments including the name of the components. * Format(s): .pkl * Size(s): 240.94 KB * The Correspondance column contains the name of the components, the expID column contain the name of the experiment id used in the time series names.