cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26188/30018010.v3
title: Supplementary material

description: Supplementary Tables and GlossaryTable S1. Climatic records for NEV and CWQ farmsSeasonal rainfall totals (mm), mean maximum (°C) and minimum (°C) temperatures for Northeastern Victoria (NEV) and Central-Western Queensland (CWQ) farms, reported by calendar quarters for 2013–2023. Study-period means are compared with long-term (1910–2023) averages from SILO climate data (stations: Mansfield Aero, Longreach Aero, Aramac Post Office). Bold values indicate below-average conditions. Table S2. Annual and rolling multi-year emissions intensitiesEmissions intensity (kg CO₂-e/kg product sold) for beef and goat (CWQ) and beef, sheep meat, and greasy wool (NEV), reported annually and as three-year (3YRA) and five-year (5YRA) rolling averages. Variability is summarised with mean, standard deviation, and CV%. Estimates are based on a partial pre-farm to farm-gate LCA aligned with ISO 14040/14067 and IPCC (2019), using customised GHG accounting frameworks (GAF tools). System boundaries include Scope 1, 2, and 3 emissions. Table S3. Feed supplementation program in NEV feedlot system.Annual records (2014–2023) of average feeding days, number of animals finished, total feed consumed (pellets and straw, t), and entry/sale weights for Angus cattle, and feeding duration and feed volumes for Merino lambs. Data were provided by farm operators and validated against records of feed purchases and sales.
DOI: 10.15468/dl.xpn9w4
title: Occurrence Download

description: A dataset containing 2669 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen, Occurrence evidence)",
 "TaxonKey is Odontotaenius"
 ]
}

 The dataset includes 2669 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016038-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4b62f
title: Occurrence Download

description: A dataset containing 9363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Canada",
 "GadmGid is CAN.1_1",
 "TaxonKey is Pulsatilla nuttalliana",
 "Year 1916-2025"
 ]
}

 The dataset includes 9363 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016037-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31303768
title: Mixed Method appraisal Tool (MMAT, 2018) Assessment used in Scoping Review of Electromyography Evidence in Temporomandibular Disorder

description: This Dataset contains supplementary Excel files associated with a scoping review examining electromyography (EMG) evidence in temporomandibular disorders. The Mixed-Methods Appraisal Tool (MMAT, 2018) was applied in a design-specific manner to appraise the methodological quality of included studies.<br>Studies included were narrative review, theoretical papers, observational studies and expert commentaries were assessed using the MMAT screening questions only, as additional appraisal domains are not applicable to non-empirical study designs. No randamized controlled trials or true mixed-methods studies were identified in the review. Appraisal outcomes were used to contextualize the body of evidence rather than to exclude studies or to apply quantitative weighting.
DOI: 10.15468/dl.zbdch4
title: Occurrence Download

description: A dataset containing 22176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-111.13849 32.21503,-111.0936 32.21503,-111.0936 32.23463,-111.13849 32.23463,-111.13849 32.21503))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 22176 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016035-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31303768.v1
title: Mixed Method appraisal Tool (MMAT, 2018) Assessment used in Scoping Review of Electromyography Evidence in Temporomandibular Disorder

description: This Dataset contains supplementary Excel files associated with a scoping review examining electromyography (EMG) evidence in temporomandibular disorders. The Mixed-Methods Appraisal Tool (MMAT, 2018) was applied in a design-specific manner to appraise the methodological quality of included studies.<br>Studies included were narrative review, theoretical papers, observational studies and expert commentaries were assessed using the MMAT screening questions only, as additional appraisal domains are not applicable to non-empirical study designs. No randamized controlled trials or true mixed-methods studies were identified in the review. Appraisal outcomes were used to contextualize the body of evidence rather than to exclude studies or to apply quantitative weighting.
DOI: 10.6084/m9.figshare.31303768.v2
title: Mixed Method appraisal Tool (MMAT, 2018) Assessment used in Scoping Review of Electromyography Evidence in Temporomandibular Disorder

description: This Dataset contains supplementary Excel files associated with a scoping review examining electromyography (EMG) evidence in temporomandibular disorders. The Mixed-Methods Appraisal Tool (MMAT, 2018) was applied in a design-specific manner to appraise the methodological quality of included studies.<br>Studies included were narrative review, theoretical papers, observational studies and expert commentaries were assessed using the MMAT screening questions only, as additional appraisal domains are not applicable to non-empirical study designs. No randamized controlled trials or true mixed-methods studies were identified in the review. Appraisal outcomes were used to contextualize the body of evidence rather than to exclude studies or to apply quantitative weighting.
DOI: 10.5517/ccdc.csd.cc2nbpnc
title: CCDC 2453143: Experimental Crystal Structure Determination

description: Related Article: Harry Wilson, Dietger Van den Eynden, Ajmal Roshan Unniram Parambil, Angelo Mullaliu, Carlotta Seno, Jikson Pulparayil Mathew, Muhammed Jibin Parammal, Rohan Pokratath, Christopher B. Whitehead, Tatjana N. Parac-Vogt, Jonathan De Roo
|2026|ACS Nano|||doi:10.1021/acsnano.5c20350
description: Related Article: Muhammed Jibin Parammal, Jikson Pulparayil Mathew, Alessandro Prescimone, Ajmal Roshan Unniram Parambil, Harry Wilson, and Jonathan De Roo|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2l7jcr
title: CSD 2390514: Experimental Crystal Structure Determination

description: Related Article: Yuhan Xu|2026|J.Phys.Chem.C|130|1877|doi:10.1021/acs.jpcc.5c07212
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.a4v2kg
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alpinia roxburghii",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 164 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016039-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31303735
title: Critical Appraisal Checklist, Joanna Briggs Institute (JBI) used in Scoping Review of Electromyography Evidence in Temporomandibular Disorder

description: This dataset contains supplementary Excel files supporting a scoping review of electromyography (EMG) evidence in temporomandibular disorders. All fourteen included studies were critically appraised using the Joanna Briggs Institute (JBI) quantitative appraisal checklist. Methodological appraisal was conducted to contextualize the strngth and quality of available evidence rather than to exclude studies from the review.
DOI: 10.6084/m9.figshare.31303735.v3
title: Critical Appraisal Checklist, Joanna Briggs Institute (JBI) used in Scoping Review of Electromyography Evidence in Temporomandibular Disorder

description: This dataset contains supplementary Excel files supporting a scoping review of electromyography (EMG) evidence in temporomandibular disorders. All fourteen included studies were critically appraised using the Joanna Briggs Institute (JBI) quantitative appraisal checklist. Methodological appraisal was conducted to contextualize the strngth and quality of available evidence rather than to exclude studies from the review.
DOI: 10.6084/m9.figshare.31303735.v2
title: Critical Appraisal Checklist, Joanna Briggs Institute (JBI) used in Scoping Review of Electromyography Evidence in Temporomandibular Disorder

description: This dataset contains supplementary Excel files supporting a scoping review of electromyography (EMG) evidence in temporomandibular disorders. All fourteen included studies were critically appraised using the Joanna Briggs Institute (JBI) quantitative appraisal checklist. Methodological appraisal was conducted to contextualize the strngth and quality of available evidence rather than to exclude studies from the review.
DOI: 10.15468/dl.67f26q
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rudgea stipulacea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 327 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016040-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kv5vtq
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bujurquina eurhinus",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016043-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zynup
title: Occurrence Download

description: A dataset containing 2005 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tortricidae (Lepidoptera) collection of the I.I. Schmalhausen Institute of Zoology NAS of Ukraine"
 ]
}

 The dataset includes 2005 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016042-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18635100
title: Galaxy MAGs taxonomy annotation workflow test files
DOI: 10.5281/zenodo.18635101
title: Galaxy MAGs taxonomy annotation workflow test files
DOI: 10.34740/kaggle/dsv/14831591
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.6nkyxk
title: Occurrence Download

description: A dataset containing 883 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Humulus lupulus"
 ]
}

 The dataset includes 883 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016044-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4r8xmf
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rustia schunkeana",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 95 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016048-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dn3kwe
title: Occurrence Download

description: A dataset containing 1048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amorphophallus paeoniifolius",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 1048 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016047-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31334272
title: AKP meta-analysis dataset

description: This repository contains the dataset and R code used for the meta-analysis testing support for the Anna Karenina Principle (AKP) in animal microbiomes during non-bacterial infections. The dataset includes extracted information from published studies comparing infected and uninfected hosts, including alpha-diversity responses, beta-diversity dispersion (AKP support), host taxonomy, pathogen type (viral, fungal, or eukaryotic), microbiome compartment, and study characteristics.The accompanying R script reproduces all statistical analyses presented in the manuscript, including descriptive summaries, association tests, and visualization of AKP support across systems. The goal of this study is to assess whether infection-associated microbiome destabilization, defined as increased inter-individual variability, represents a general ecological pattern across animal hosts and pathogen types.
DOI: 10.6084/m9.figshare.31334272.v1
title: AKP meta-analysis dataset

description: This repository contains the dataset and R code used for the meta-analysis testing support for the Anna Karenina Principle (AKP) in animal microbiomes during non-bacterial infections. The dataset includes extracted information from published studies comparing infected and uninfected hosts, including alpha-diversity responses, beta-diversity dispersion (AKP support), host taxonomy, pathogen type (viral, fungal, or eukaryotic), microbiome compartment, and study characteristics.The accompanying R script reproduces all statistical analyses presented in the manuscript, including descriptive summaries, association tests, and visualization of AKP support across systems. The goal of this study is to assess whether infection-associated microbiome destabilization, defined as increased inter-individual variability, represents a general ecological pattern across animal hosts and pathogen types.
DOI: 10.5281/zenodo.18635054
title: LINF_330014200

description: WD domain - G-beta repeat -containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18635053
title: LINF_330014200

description: WD domain - G-beta repeat -containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.gh8rpu
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bujurquina hophrys",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 27 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016049-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/a47hhb
title: NRC: First reports of Coolia monotis Meunier (Dinophyceae) from Nova Scotia, Canada

description: In 2012, a sample collected in Cape Breton at Johnston Harbour in the Bras d'Or Lake revealed presence of a Dinophyceae, Coolia monotis Meunier. This species had not previously been reported from this area and subsequently several sites in Cape Breton and on the eastern shore of Nova Scotia were sampled to determine species distribution. Samples were collected in shallow water (&lt;0.5m depth) and later analysed in the laboratory for presence of C. monotis. This dataset does not contain quantitative information - recorded observations indicate presence/absence at a specific location. Date of the sampling event is included in the dataset.
DOI: 10.15468/dl.axdm4q
title: Occurrence Download

description: A dataset containing 2061 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-116.72671 11.71401,-84.88067 11.71401,-84.88067 34.12954,-116.72671 34.12954,-116.72671 11.71401))",
 "HasGeospatialIssue is false",
 "TaxonKey is Magnolia"
 ]
}

 The dataset includes 2061 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016050-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npts4j
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sabicea ceylanica",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016051-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c50863k3v
title: MassIVE MSV000100841 - Soil microbiome pH perturbation metabolomics - GC
title: Examined soil microbiome microcosms to determine the effect of changing pH on the production of lignocellulolytic enzymes. Soil from a Prosser, Washington field site was incubated in mesh bags on top of a soil interfacing glass bead matrix with MOPS minimal media amended with or without carboxymethyl cellulose at three different pH levels. After incubation, 2 mL of media solution was collected, centrifuged, and filtered to remove cells prior to preparing supernatant for metabolomics. GC-MS raw data files are processed using the Metabolite Detector (MD) software. Retention indices (RI) of detected metabolites are calculated based on the analysis of the FAMEs mixture, followed by their chromatographic alignment across all analyses after deconvolution. Compound detection is done on MD with a minimum peak threshold of 10.0 and deconvolution width of 8.0. Settings for compound matching and identification are delta RI of 20.0, a required S/N of 5.0, and the scoring method combines the RI and mass spectra. Metabolites are identified by matching experimental spectra to a PNNL augmented version of Agilent GC-MS metabolomics Library, containing spectra and validated RI for over 1200 metabolites. All metabolite identifications and quantification ions are manually confirmed to reduce deconvolution errors during automated data-processing and to eliminate false identifications. The NIST20 and Wiley11 GC-MS libraries are also used to cross-validate the spectral matching scores obtained using the PNNL augmented library. The unknown peaks are additionally matched with the NIST20 and Wiley11 GC-MS libraries and reported as tentative identifications only if the MS score is high. Additionally, the MS-DIAL website provides various types of public GC-MS databases, so they were converted to MSL database format, and unknown peaks can be searched with them using ChemStation.
DOI: 10.5281/zenodo.18632779
title: MolMeDB RDF

description: MolMeDB (Molecules on Membranes Database) is an open, comprehensive and interactive database about interactions of (small) molecules. The database primarily contains information on interactions of molecules with biomembranes (passive interactions) and is gradually supplemented by interactions of molecules with molecular transporters (active interactions). Data is obtained from the publicly-accessible literature; however, their inconsistent format and small amount do not provide sufficient insight to understand the related issues. For that reason, most of the data is obtained by in-house calculations simulating the penetration of a molecule through the membrane and computing the details of their interactions.

MolMeDB can be visited at https://molmedb.upol.cz

 

MolMeDB RDF is a semantic version of MolMeDB, providing data in an interoperable and machine-readable semantic format.

The newest version of MolMeDB RDF can be queried via SPARQL endpoint at https://idsm.elixir-czech.cz/sparql/endpoint/molmedb

The schema of MolMeDB RDF is described in the documentation at https://docs.molmedb.upol.cz/doc/rdf
DOI: 10.5281/zenodo.18632780
title: MolMeDB RDF

description: MolMeDB (Molecules on Membranes Database) is an open, comprehensive and interactive database about interactions of (small) molecules. The database primarily contains information on interactions of molecules with biomembranes (passive interactions) and is gradually supplemented by interactions of molecules with molecular transporters (active interactions). Data is obtained from the publicly-accessible literature; however, their inconsistent format and small amount do not provide sufficient insight to understand the related issues. For that reason, most of the data is obtained by in-house calculations simulating the penetration of a molecule through the membrane and computing the details of their interactions.

MolMeDB can be visited at https://molmedb.upol.cz

 

MolMeDB RDF is a semantic version of MolMeDB, providing data in an interoperable and machine-readable semantic format.

The newest version of MolMeDB RDF can be queried via SPARQL endpoint at https://idsm.elixir-czech.cz/sparql/endpoint/molmedb

The schema of MolMeDB RDF is described in the documentation at https://docs.molmedb.upol.cz/doc/rdf
DOI: 10.15468/dl.9rpmrt
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agapetes mannii",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 35 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016053-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.js94gg
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bujurquina huallagae",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 19 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016054-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18635146
title: berghia_rissodominguezi_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.18635145
title: berghia_rissodominguezi_decontaminated_FSCR.fasta.gz