cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5m5dr78/1
title: data
DOI: 10.5061/dryad.5q39d8q/1
title: Anderson-et-al-Oryx-fire-dataset

description: This is an R file which provides code to read-in and view the MODIS-derived fire products from the Serengeti ecosystem between the years of 2000 and 2016. The two main products which accessed via the code is a raster of fire frequency from 2000 – 2016 (Anderson-et-al-Oryx-fire-frequency-2000-2016.tif) and the spatial distribution of annual burns from 2000 – 2016 provided as a set of stacked rasters (Anderson-et-al-Oryx-annual-fire-bands-2000-2016.tif).
DOI: 10.5061/dryad.5q39d8q/2
title: Anderson-et-al-Oryx-fire-frequency-2000-2016

description: This is a raster in .tif format of MODIS-derived fire frequency between the years 2000 – 2016; the CRS of the raster is in the sinusoidal projection (+proj=sinu +lon_0=0 +x_0=0 +y_0=0 +a=6371007.181 +b=6371007.181 +units=m +no_defs).
DOI: 10.5061/dryad.5q39d8q/3
title: Anderson-et-al-Oryx-annual-fire-bands-2000-2016

description: This is a stack of 16 rasters in .tif format showing the spatial locations of annual fires between the years 2000 – 2016 as derived from MODIS; the CRS of the rasters are in the sinusoidal projection (+proj=sinu +lon_0=0 +x_0=0 +y_0=0 +a=6371007.181 +b=6371007.181 +units=m +no_defs).
DOI: 10.5061/dryad.72431/1
title: Nanoindentation and EDS scanning of brass and aluminium balls

description: Nanoindentation results for brass and aluminium balls with data for fused quartz used in Berkovich tip calibration to find its effective radius of curvature. The first 10 files for aluminium have been processed in terms of initial contact of the blunt tip. Also, there are energy-dispersive spectroscopic (EDS) scans of the exterior of an aluminium ball to establish the nature of its external rough coating.
DOI: 10.5061/dryad.7338sk6/1
title: DRYADdostalJEcol2018

description: Biomass data were collected in the garden pot experiment from five community types in April 2017. Explanation to column headings: "Target species" = one of 49 species used in the experiment; "Competitor species" = one of two competitor species (Arrhenatherum elatius or Origanum vulgare) used in the experiment; "Community type" = see Fig. 1 in "Dostál P. et al. (2018) Linking species abundance and overyielding from experimental communities with niche and fitness characteristics. Journal or Ecology" for details how five community types were constructed; "#Target individuals planted"= number of target species individuals planted per pot; "#Competitor individuals planted"= number of target species individuals planted per pot; "Inoculum" = identity of species from the first (conditioning) phase serving as a source of soil inoculum in the second experimental phase (HET indicates heterospecific incululum prepared by mixing first-phase soils of all 49 target species); "Target biomass (g, per pot)" = total target species biomass estimated in a pot; "Target biomass (mg, per 1 planted ind.)" = biomass per single planted individual of target species; "Competitor biomass (g, per pot)" = total competitor species biomass estimated in a pot; "Competitor biomass (mg, per 1 planted ind.)" = biomass per single planted individual of competitor species.
DOI: 10.5061/dryad.7ns4pk2/2
title: Individual measurement data from transplant experiment 2 using F1 crosses between lake and stream Astatotilapia burtoni transplanted to the lake habitat

description: SL- standard length, TL - total length, W - weight, m- male, f - female, ? - unknown, KaL x KaL - pure lake cross, Ka2 x KaL - hybrid, Ka2 x Ka2 - pure river cross
DOI: 10.5061/dryad.837d96j/1
title: inbreeding_dryad

description: Data from inbreeding depression assay
DOI: 10.5061/dryad.891vt38/1
title: Data from Coping with the climate: Cuticular hydrocarbon acclimation of ants under constant and fluctuating conditions

description: The Excel file contains four sheets: 1) The composition of the cuticular hydrocarbon profile of Myrmica rubra, 2) the composition of the cuticular hydrocarbon profile of Myrmica ruginodis, 3) data of a drought survival experiment and 4) viscosity data measured using microrheology. The compositional data is presented as percentages that add up to 100%.
DOI: 10.5061/dryad.cf2hs41/1
title: Dryad data

description: Allometric data, Principal components, and Procrustes distances for all claws.
DOI: 10.5061/dryad.d28080r/1
title: Data for Chong et al., Measuring selection on PC scores

description: Excel file containing: (1) Arabidopsis phenotypes, (2) Arabidopsis line means, (3) Calculations for solving equation 1 and estimating standard errors, for all data-sets and case-studies included in the paper.
DOI: 10.5061/dryad.f8c9165/1
title: R markdown for reproducible workflow

description: R markdown file containing the fully reproducible workflow of the study.
DOI: 10.5061/dryad.f8c9165/2
title: Built reproducible workflow

description: Built reproducible workflow containing all analyses of the study including (low quality versions of) all figures & tables.
DOI: 10.5061/dryad.g579t7k/1
title: Zip archive of data files

description: Archive of data, analysis, and results files including control/configuration files used for phylogenetic analyses, DNA sequence alignments, phylogenetic tree sets, and geographic data.
DOI: 10.5061/dryad.k129c/1
title: Nichols-et-al-AbovegroundData

description: Above-ground data from St Paul Island - rank ordered abundances of plant taxa occurring in sampled sites. Each sample corresponds to a sample used for DNA metabarcoding.
DOI: 10.5061/dryad.kk628dt/1
title: all_phylogenetic_trees

description: The results of all 19 phylogenetic analyses conducted in this study. Each tree corresponds to an analysis described in Supplementary Table 4.
DOI: 10.5061/dryad.kk628dt/2
title: amino_acid_gene_trees

description: Gene trees for all 21 loci sequenced in this study produced from amino acid alignments
DOI: 10.5061/dryad.kk628dt/3
title: nucleotide_gene_trees

description: Gene trees for all 21 loci sequenced in this study produced from codon alignments
DOI: 10.5061/dryad.kk628dt/4
title: all_alignments

description: All alignments (codon and amino acid) used for phylogenetic analyses
DOI: 10.5061/dryad.m0s82c3.1
title: Data from: The unexpected genetic mating system of the red-backed toadlet (Pseudophryne coriacea); a species with prolonged terrestrial breeding and cryptic reproductive behaviour
DOI: 10.5061/dryad.m0s82c3.1/1.1
title: Hamming distance matrix - Pseudophyne coriacea

description: SNP Hamming distance values between siblings, adults and offspring from a population of Pseudophryne coriacea .
DOI: 10.5061/dryad.m0s82c3.2
title: Data from: The unexpected genetic mating system of the red‐backed toadlet (Pseudophryne coriacea): a species with prolonged terrestrial breeding and cryptic reproductive behaviour
DOI: 10.5061/dryad.m0s82c3.2/1.2
title: Hamming distance matrix - Pseudophyne coriacea

description: SNP Hamming distance values between siblings, adults and offspring from a population of Pseudophryne coriacea .
DOI: 10.5061/dryad.m0s82c3.2/2.2
title: SNP scoring data - Pseudophryne coriacea
DOI: 10.5061/dryad.n0vf77m/2
title: IsolationByDistance

description: Zip file containing the data file and R code for the MLPE isolation by distance analyses
DOI: 10.5061/dryad.n0vf77m/3
title: Monardella_structure_infile

description: Input file for STRUCTURE analyses, with SNP loci in the header row, and each individual in a row. Missing data is indicated with -9.
DOI: 10.5061/dryad.n0vf77m/4
title: Monardella_Treemix_infile

description: TreeMix input file.
DOI: 10.5061/dryad.n0vf77m/5
title: soil_tissue_PCA_regression

description: Zip file containing data and R code for soil and site principal components analyses and tissue v. soil regression analyses and model comparison.
DOI: 10.5061/dryad.n31f0t4/1
title: PCR assay results

description: Results from PCR assays of individual fly samples removed from experimental cages.
DOI: 10.5061/dryad.n31f0t4/2
title: Kriesner_Hoffmann_2018_stochastic_model1

description: Stochastic model for local dynamics of wAu and wRi infection
DOI: 10.5061/dryad.n31f0t4/3
title: Pkriesner1_CA5YJANXX_NoIndex_L001_R1.fastq.gz.001

description: ddRAD sequence data Read 1 part 1
DOI: 10.5061/dryad.n31f0t4/4
title: Pkriesner1_CA5YJANXX_NoIndex_L001_R1.fastq.gz.002

description: ddRAD sequence data Read 1 part 2
DOI: 10.5061/dryad.n31f0t4/5
title: Pkriesner1_CA5YJANXX_NoIndex_L001_R2.fastq.gz.001

description: ddRAD sequence data Read 2 part 1
DOI: 10.5061/dryad.qf414sb/1
title: Mukhopadhyay2018NectarLarceny

description: It is a zip file which contains all the data files, codes and the README file.
DOI: 10.5061/dryad.t0cs166/1
title: Data files_Egelkraut etal 2018_Functional Ecology

description: This data file provides the dry weights of two phytometer species, Betula nana and Potentilla crantzii, which were grown in different soils, under controlled conditions for 2,5-3 months. Next to above and below ground weight, we also assessed colonization of the roots by mycorrhizas; ectomycorrhiza on B. nana roots, and vesicular-arbuscular mycorrhiza in P. crantzii roots. Lastly, concentrations of mineral N and P are provided.
DOI: 10.5061/dryad.td0j2r8/3
title: qPCR_data

description: qPCR raw data and calculations to obtain the log2 expression used in the paper (highlighted in red color). Different sheets include the calculations calibrated for the different treatment groups..
DOI: 10.5061/dryad.td0j2r8/4
title: PO_activity

description: Phenoloxidase activity data by larval family and treatment. The response variable used in the paper is highlighted in red color.
DOI: 10.5061/dryad.td0j2r8/5
title: NMR_data

description: Median and square root transformed NMR quantification data for aucubin, catalpol and aucubin+catalpol in the plant treatments (low and high IG, healthy and mildew infected). Response variable used in the paper are highlighted in red color. Raw data for individual samples is presented on a separate data sheet.
DOI: 10.17632/59g6dv9ty8.1
title: Data for: Effects of ovarian reserve function and hormone therapy on hearing in premenopausal and postmenopausal women: a cross-sectional study
DOI: 10.17632/d2fxgpxz5c.1
title: Data for: Use of biochemical miniaturized galleries, rRNA based lateral flow assay and Real Time PCR for Cronobacter spp. confirmation

description: Identification of Cronobacter represent a major challenge for laboratories testing powdered infant formula (PIF). In the present study, two biochemical galleries and three molecular methods have been applied to confirm 276 Cronobacter spp. and non-Cronobacter isolates from different sources. Using the latest database of API 20 E and ID 32 E biochemical miniaturized kits, 53% and 78% of the isolates were identified respectively. From the available results, total accuracy for Cronobacter detection was in 97.3% (API 20 E) and 99.1% (ID 32 E). All three molecular methods based on rRNA based lateral flow, Real Time PCR with hybridization probe and with hydrolysis probe produced an accuracy for Cronobacter spp. confirmation of more than 99%. A pilot concept trial using Next Generation Sequencing (NGS) correctly identified 58 out of 67 isolates (86.5%) in DNA mixtures. These results indicate that the commercially available approaches ID 32 E, rRNA based lateral flow and Real Time PCR are all suitable for Cronobacter confirmation at genus level. NGS may provide an alternative in identification of Cronobacter species in complex mixtures, provided that the in sequence database will be improved.
DOI: 10.17632/hhzy5rxsmk.1
title: Data for: The Gastronomic Cultural Impact of the African Cuisine

description: There are different economic, social, political and cultural features belonging to the societies around the world. Food and culinary topics are among the important cultural heritages that reveal the identity of the community, lifestyle, eating habits and authenticity. The African communities have remained under the rule of different civilizations from ancient times and have been influenced by the cultures of these civilizations, eventually forming their own unique kitchen culture. In this study, we examined the cultural reflections and effects of cuisine in the north, south, west and eastern parts of the four main regions of Africa, the culinary history, cooking techniques, ingredients used and eating habits.
DOI: 10.17632/ybbpg3z8pj.1
title: Data for: Pharmacological characterization of the cannabinoid receptor 2 agonist, β-caryophyllene on seizure models in mice

description: raw data
DOI: 10.5061/dryad.2gg2f50/1
title: All data and code for analysis of presented data

description: This folder provides all data presented and analyzed within the manuscript. This includes R and Matlab scripts used to analyze the data and prepare the figures.
DOI: 10.5061/dryad.31tk592/2
title: Environmental data

description: Mean, maximal and minimal salinity and temperature at the 47 sites.
DOI: 10.5061/dryad.3856701/1
title: Supplemental_Tables_Figures

description: This file contains 4 supplemental tables and 2 supplemental figures.
DOI: 10.5061/dryad.3vb89dj/1
title: Phenotypic raw data for In(3R)Payne Inversion

description: Our main goal was to examine whether the clinally varying In(3R)Payne inversion polymorphism affects three major survival traits in North American populations of D. melanogaster. We measured adult lifespan (in days), survival upon starvation (in hours), and survival upon cold shock (as the proportion survival ) for isochromosomal lines of D. melanogaster from Florida and Maine, which were either homokaryotypic for the In(3R)Payne inversion or for the uninverted (standard) chromosomal arrangement, at growth temperatures (18°C and 25°C). We also measured wing area (in mm2). For more details see our paper Durmaz et al. 2018, entitled "An inversion supergene in Drosophila underpins latitudinal clines in survival traits", published in Journal of Evolutionary Biology. For additional details please contact the first author, Esra Durmaz (esra.durmaz@unifr.ch), or the corresponding author, Thomas Flatt (thomas.flatt@unifr.ch).
DOI: 10.5061/dryad.4c57d0f/1
title: Sample information

description: Sample ID with taxa designation and geographic locality. See Appendix Table 2 for detailed information on each sample.
DOI: 10.5061/dryad.4c57d0f/2
title: De novo STACKS output (all SNPs)

description: STACKS output of all SNPs from the de novo assembly in VCF format
DOI: 10.5061/dryad.4c57d0f/3
title: De novo STACKS output (first SNP per STACK)

description: STACKS output of the first SNP per STACK from the de novo assembly in VCF format
DOI: 10.5061/dryad.4c57d0f/4
title: Reference-based STACKS output (all SNPs)

description: STACKS output of all SNPs from the reference-based assembly in VCF format
DOI: 10.5061/dryad.4c57d0f/5
title: Reference-based STACKS output (first SNP per STACK)

description: STACKS output of the first SNP per STACK from the reference-based assembly in VCF format
DOI: 10.5061/dryad.4p9v048/1
title: CHONe_EF-13_ChuJ_Hypoxia_Temporal_betadiversity

description: Data are animal counts and summarized environmental measurements collected from a stationary, still camera deployment, tethered to the Ocean Networks Canada (ONC) VENUS observatory. Data were collected as part of a PhD dissertation (Chu).
DOI: 10.5061/dryad.4r4j835/1
title: MAKER Annotation KIAN8.4

description: Whole genome annotation from the greater bamboo lemur, Prolemur simus, from a wild-caught monitored individual.
DOI: 10.5061/dryad.6v728j1/1
title: Behavioral data

description: Incorrect answers or RTs lower than 100 ms or higher than 1000 ms were discarded from the analysis (less than 7% of trials). RTs were analyzed by paired-samples two-tailed t-tests (significance threshold, P
DOI: 10.5061/dryad.6v728j1/2
title: Neurophysiological data: Baseline modulation

description: Baseline spTMS MEPs recorded at the beginning, and at the end of the experiment.The 2 × 2 ANOVA between the TMS protocols (SICI, ICF) recorded in the two baseline (pre, post) .
DOI: 10.5061/dryad.6v728j1/3
title: Neurophysiological data: Generic action observation modulation

description: 1)comparison between baseline spTMS MEPs and pooled action observation conditions. 2)The ANOVA on MEPs amplitude during action observation and baseline in the two different protocols: ppTMS 3ms , ppTMS 12ms.3)The ANOVA on intracortical excitability modulations (ratio between ppTMS and spTMS): CFC and sICI during generic action observation and baseline
DOI: 10.5061/dryad.6v728j1/4
title: Neurophysiological data: Error-related modulation

description: 1)The 3 × 3 ANOVA on spTMS between the condition(Correct, Control, Execution Error)  and TMS timing (120 ms, 180 ms, 240 ms).  In the spTMS protocol, the dependent variable was MEPs amplitude normalized by the average baseline. 2)The 2 × 3 × 3 repeated-measures ANOVA on the intracortical modulation index. index of intracortical modulation (iMEP) is  the mean ratio (ppTMScondition/spTMScondition) over the same mean ratio at baseline (ppTMSbaseline/spTMSbaseline), separately for each ppTMS protocols (sICI, ICF). The relationship between the effect found in each condition was then expressed into percentages:

[(PPcondition/SPcondition)(PPbaseline/SPbaseline)]∗100
DOI: 10.5061/dryad.7530v/1
title: Deparia 4_cpDNA_region_alignment

description: trnL-L-F + rps16-matK IGS + matK + rbcL alignment in nexus with partition and model for Mr. Bayes and Garli.
DOI: 10.5061/dryad.7530v/2
title: Deparia 4_cpDNA_region_ML_bestree

description: trnL-L-F + rps16-matK IGS + matK + rbcL ML most likely phylogeny inferred by Garli
DOI: 10.5061/dryad.77vq6gs/1
title: Anopheles gambiae dataset

description: The dataset contains densities of mosquito vector collected in different locations in Dar es Salaam city
DOI: 10.5061/dryad.77vq6gs/2
title: Malaria prevalence data

description: The dataset contains malaria positivity as it was tested in Dar es Salaam city.
DOI: 10.5061/dryad.77vq6gs/3
title: Geophysical variables

description: This file provides topographic hydrological variables used in the analysis. the variables were derived from a 10m resolution digital elevation model of Dar es Salaam city.
DOI: 10.5061/dryad.7h5q8/1
title: Trial data + metadata

description: This excel file has two tabs. First, a tab with a key for all column headings in the second tab. Second, a table of data for the individuals, behaviors, and experimental treatments for the trials analyzed in this manuscript.
DOI: 10.5061/dryad.837d96j/2
title: viability_dryad

description: Data from adaptation assay
DOI: 10.5061/dryad.85qb2r1/1
title: Unfolded site frequency spectra and divergence counts under different simulation scenarios

description: This archive contains files composed of the unfolded site frequency spectra and divergence counts of each replicates of each simulation scenarios we generated in the present study.
DOI: 10.5061/dryad.9mj8mt5/1
title: EVOLUTION_Letsch_et_al
DOI: 10.5061/dryad.c57c1s0/1
title: Run1_A2_A3.ome

description: Image stack file
DOI: 10.5061/dryad.c57c1s0/2
title: Run1_D2_D3.ome

description: Image Stack File
DOI: 10.5061/dryad.c57c1s0/3
title: Run2_B4_B3.ome

description: Image Stack File
DOI: 10.5061/dryad.c57c1s0/4
title: Run3_F4_F3.ome

description: Image Stack File
DOI: 10.5061/dryad.fq7gv88/1
title: Gene phylogenies based on Bayesian analysis

description: Phylogenetic analyses of genes of interest (EPR, HB, NFP, HCT, EPR, NIN, and RPG). Amino acid sequence alignments were generated using MAFFT version 7.017. Analyses were performed using MrBayes version 3.2.6 running 2.2 million generations, setting gamma-distributed rate variation and integrating over different models of amino acid sequence evolution (aamodelpr=mixed). For NFP analyses were based on the full-length sequences as well as  separately on the kinase domain only.
DOI: 10.5061/dryad.g082q0b/1
title: Absorbed into blood

description: The chromatorgraphy of the components absorbed into blood
DOI: 10.5061/dryad.g082q0b/2
title: Absorbed into blood 2

description: The chromatorgraphy of the components absorbed into blood
DOI: 10.5061/dryad.gp898f1/1
title: Data - Effects of Forest dynamics on species diversity

description: Data were collected between 2013 and 2015 in the western Carpathian Mountains, estern Slovakia in Fagus sylvatica primeval and production forests. The "Data"-file contains the following information: "CCA - Bryophytes/Lichens/Groundveg" contain the species tables (abbreviations in Appendix S4), "CCA - Bryophytes/Lichens/Groundveg - Stages" the calculated relative dominance of a stage on a sampling unit, which were used for the CCA analysis. "ISA - Bryophytes/Lichens" and "ISA - Bryophytes/Lichens -DBH"contain the data used for the indicator species analysis in order to detect a significant preference of epiphyte species to certain stem diameters (dbh) (living and dead standing trees). "ISA - Downed BL" and "ISA - Downed BL - DBH" contain the same information for epiphytes on downed deadwood. "Mean Species Number" provides the number of Plants, bryophytes and lichens in each forest development stage. "Downed deadwood - Mean species" provides the number of bryophytes and lichens in each forest development stage on downed deadwood. "RE - Curves - Bryophytes/Lichens/Plants" provide the data used for the rarefaction/extrapolation curves in order to compare the species richness between the three forest development stages and the production forest. "DBH - Species" and "DBH - Species - Production" contain the number of epiphytic bryophyte and lichen species in the primeval and production forest used for the GLM analysis.
DOI: 10.5061/dryad.h4j7hv4/1
title: Demultiplexed fastq files for each sample - J. singaporensis

description: 20160308_JSIN_sub1_flt_fastq
DOI: 10.5061/dryad.h4j7hv4/2
title: Demultiplexed fastq files for each sample - P. maculata

description: 20160518_PMAC_flt_fastq
DOI: 10.5061/dryad.h6t7bv4/1
title: Data with numbers of alien animal species in grid cells
DOI: 10.5061/dryad.m810q41/1
title: RSOS-data availability
DOI: 10.5061/dryad.n31f0t4/6
title: Pkriesner1_CA5YJANXX_NoIndex_L001_R2.fastq.gz.002

description: ddRAD sequence data Read 2 part 2
DOI: 10.5061/dryad.p1n10dv/1
title: Data_supplement_Murray_Pathgeography

description: Data underpinning analyses presented Boxes
DOI: 10.5061/dryad.rg54h/1
title: gg-al-1_73
DOI: 10.5061/dryad.sf0fc75/1
title: Plos One data 2011 and 2016 Climate Change Survey 060618

description: SPSS Data File
DOI: 10.5061/dryad.ss5r686/1
title: DATA FILE Zhu et al 2018 PNAS Symbiotic polydnavirus

description: The data file combines all data corresponding with the three figures presented in the PNAS publication. See the first page of the excel file for a short Read Me.
DOI: 10.5061/dryad.tt8n46q/1
title: Final datasets used for outlier detection, population genetic analyses and ABC modeling

description: D1-D3 were used for outlier detection; D4 was used for population genetic analyses; ten sub-datasets were used for ABC modeling.
DOI: 10.5061/dryad.tt8n46q/2
title: Input data and scripts for GLMM

description: Input data of the three species and scripts used for GLMM.
DOI: 10.5061/dryad.tt8n46q/3
title: SDM script for Primula fasciculata as an example.