cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/h0h2-zh95
title: Leydig cell tumor of ovary, NOS - Female, 50 - Tissue image [3300730006074211]

description: This is the histopathological image of OVARY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 50Clinical description: Hyperandrogenism, obesity, diabetes, insulin resistance, hypertension, hirsutism. Well-circumscribed nodule in right ovary (2,5cm diameter).Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: SPECIALIZED GONADAL NEOPLASMSDiagnosis: Leydig cell tumor of ovary, NOSResult of the histopathological examination: AR: weak nuclear reaction in all tumor cells.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OVARYTissue: OvaryType of staining: positive/IHCStaining: Not applicableAntibody: Androgen receptorTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/qp5f-2g59
title: Abdominal pregnancy - Female, 23 - Tissue image [5260730006548891]

description: This is the histopathological image of PLACENTA tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 23Clinical description: Primipara Hbd 35Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XV - Pregnancy, childbirth and the puerperiumDiagnosis: Abdominal pregnancyResult of the histopathological examination: Fetal membranes with normal structure.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: PLACENTATissue: Fetal membranesType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/3yzy-jp28
title: Infiltrating duct carcinoma, NOS - Female, 46 - Tissue image [4140730009843331]

description: This is the histopathological image of BREAST tissue sample obtained in University of Warmia and Mazury in Olsztyn and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 46Clinical description: Breast tumor.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Infiltrating duct carcinoma, NOSResult of the histopathological examination: Breast carcinoma NST G2.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Upper breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: University of Warmia and Mazury in Olsztyn
DOI: 10.48370/ofd/be7i10
title: Myodes glareolus - 74389, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-06-01, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/qphx-4r66
title: Mixed germ cell tumor - Male, 28 - Tissue image [3200630011575371]

description: This is the histopathological image of TESTIS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 28Clinical description: Tumor of right testis.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Mixed germ cell tumorResult of the histopathological examination: Mixed germ cell tumor: seminoma and embryonal carcinoma (CD30+).Sample:Material: FFPECollecting method: Surgical specimenTopography: MALE GENITAL ORGANSOrgan: TESTISTissue: Testis, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/1t0y-gp61
title: Polyp of stomach and duodenum - Male, 59 - Tissue image [8160730027016101]

description: This is the histopathological image of STOMACH tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 59Clinical description: EUS: 9 x 7 mm hypoechoic tumor in pylorus of stomach.  Suspicion of GIST.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XI - Diseases of the digestive systemDiagnosis: Polyp of stomach and duodenumResult of the histopathological examination: Inflammatory fibroid polyp: CD34+, CD117- (+ in mast cells), DOG1-, SMA focally+, CKAE1/AE3-. 
Intestinal metaplasia in gastric mucosa.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: STOMACHTissue: PylorusType of staining: positive/IHCStaining: Not applicableAntibody: DOG1Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/2d9h-nt73
title: Squamous cell carcinoma, NOS - Male, 82 - Tissue image [3220630024694501]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 82Clinical description: Tumor of the neck.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: SQUAMOUS CELL NEOPLASMSDiagnosis: Squamous cell carcinoma, NOSResult of the histopathological examination: Squamous cell carcinoma.Sample:Material: FFPECollecting method: Surgical specimenTopography: SKINOrgan: SKINTissue: Skin of neckType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.19106134
title: Additional file 1 of Environmental differences explain subtle yet detectable genetic structure in a widespread pollinator

description: Additional file 1: Table S1. Microsatellite loci used in this work, with original locus names [127], the primer mixes they were assigned to, repeat units (motifs), size ranges, annealing temperatures (Tm), forward and reverse primer sequences (5’–3’) as well as information on null alleles and stuttering. Table S2. Basic population genetic statistics for each sampling location encompassing diploid (‘dpds’) and both haploid and diploid individuals (‘mpds’). N: number of individuals; NA: number of alleles; NE: number of effective alleles; AR: allelic richness, rarefied for seven individuals (k); uHE: unbiased expected heterozygosity; HO: observed heterozygosity. Observed heterozygosity values between ‘dpds’ and ‘mpds’ are largely congruent, as SPAGeDi, even though capable of working with mixed-ploidy data sets, does not include haploid individuals in calculating this metric. Table S3. Below the diagonal: Multilocus pairwise Fst values calculated with GenAlEx and based on a data set containing diploid individuals only. Above the diagonal: Corresponding FDR-corrected P values. Marginally significant Fst values and P values are indicated in bold. See Table S8 for population names. Table S4. Above the diagonal: Multilocus pairwise Fst values computed with polysat and based on a data set containing both haploid and diploid individuals. Below the diagonal: Corresponding bootstrap-derived upper 95% confidence intervals. See Table S8 for population names. Table S5. Above the diagonal: Multilocus pairwise Fst values calculated with polysat and based on a data set containing diploid individuals only. Below the diagonal: Corresponding bootstrap-derived upper 95% confidence intervals. See Table S8 for population names. Table S6. Discriminant analysis of principal components (DAPC) result showing the assignment of individuals to clusters identified de novo. Table S7. Pearson correlation coefficients of environmental variables at population locations harbouring both haploid and diploid individuals. See Table S9 for the abbreviations used. Table S8. Populations sampled, including their abbreviations, locations, and the number of individuals. ‘cpds’: full data set after exclusion of full siblings and clones; ‘pop10’: ‘cpds’ after excluding populations with fewer than 10 individuals; ‘mpds’: mixed-ploidy data set encompassing both haploid males and diploid females; ‘dpds’: data set containing diploid individuals only. Table S9. Environmental variables used. Those in bold were retained after stepwise elimination with a variance inflation factor ≥ 10. Table S10. Resistance matrix derived from Circuitscape, where higher values indicate higher predicted resistance to inter-population dispersal. See Table S8 for population names.
DOI: 10.34808/3gr9-pa46
title: Classical Hodgkin lymphoma, nodular sclerosis, NOS - Female, 15 - Tissue image [5050730009921991]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 15Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CHOROBA HODGKINADiagnosis: Classical Hodgkin lymphoma, nodular sclerosis, NOSResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Supraclavicular lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: Ki-67Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/bb53oe
title: Myodes glareolus - 14661, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-22, in: Białowieża National Park, Poland. Material type:
DOI: 10.6084/m9.figshare.19106134.v1
title: Additional file 1 of Environmental differences explain subtle yet detectable genetic structure in a widespread pollinator

description: Additional file 1: Table S1. Microsatellite loci used in this work, with original locus names [127], the primer mixes they were assigned to, repeat units (motifs), size ranges, annealing temperatures (Tm), forward and reverse primer sequences (5’–3’) as well as information on null alleles and stuttering. Table S2. Basic population genetic statistics for each sampling location encompassing diploid (‘dpds’) and both haploid and diploid individuals (‘mpds’). N: number of individuals; NA: number of alleles; NE: number of effective alleles; AR: allelic richness, rarefied for seven individuals (k); uHE: unbiased expected heterozygosity; HO: observed heterozygosity. Observed heterozygosity values between ‘dpds’ and ‘mpds’ are largely congruent, as SPAGeDi, even though capable of working with mixed-ploidy data sets, does not include haploid individuals in calculating this metric. Table S3. Below the diagonal: Multilocus pairwise Fst values calculated with GenAlEx and based on a data set containing diploid individuals only. Above the diagonal: Corresponding FDR-corrected P values. Marginally significant Fst values and P values are indicated in bold. See Table S8 for population names. Table S4. Above the diagonal: Multilocus pairwise Fst values computed with polysat and based on a data set containing both haploid and diploid individuals. Below the diagonal: Corresponding bootstrap-derived upper 95% confidence intervals. See Table S8 for population names. Table S5. Above the diagonal: Multilocus pairwise Fst values calculated with polysat and based on a data set containing diploid individuals only. Below the diagonal: Corresponding bootstrap-derived upper 95% confidence intervals. See Table S8 for population names. Table S6. Discriminant analysis of principal components (DAPC) result showing the assignment of individuals to clusters identified de novo. Table S7. Pearson correlation coefficients of environmental variables at population locations harbouring both haploid and diploid individuals. See Table S9 for the abbreviations used. Table S8. Populations sampled, including their abbreviations, locations, and the number of individuals. ‘cpds’: full data set after exclusion of full siblings and clones; ‘pop10’: ‘cpds’ after excluding populations with fewer than 10 individuals; ‘mpds’: mixed-ploidy data set encompassing both haploid males and diploid females; ‘dpds’: data set containing diploid individuals only. Table S9. Environmental variables used. Those in bold were retained after stepwise elimination with a variance inflation factor ≥ 10. Table S10. Resistance matrix derived from Circuitscape, where higher values indicate higher predicted resistance to inter-population dispersal. See Table S8 for population names.
DOI: 10.34808/tqyd-6m76
title: Malignant neoplasm of prostate - Male, 57 - Tissue image [2210630020335191]

description: This is the histopathological image of PROSTATE GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: Prostate cancerGender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter II - NeoplasmsDiagnosis: Malignant neoplasm of prostateResult of the histopathological examination: Lobular adenocarcinoma of the prostate. Gleason score 3+3, Resection margin free of cancer cells.  Nodular hyperplasia of the prostate. Adenosis.  Chronic prostatitis.Sample:Material: FFPECollecting method: Surgical specimenTopography: MALE GENITAL ORGANSOrgan: PROSTATE GLANDTissue: Prostate glandType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/41vw-tr84
title: Neuroendocrine tumor, grade 1 - Female, 51 - Tissue image [8160730027009131]

description: This is the histopathological image of COLON tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 51Clinical description: 0,8 x 0,8 x 0,6 cm tumor in ileocecal valve.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Neuroendocrine tumor, grade 1Result of the histopathological examination: NET G1: Mitotic index: 1 mitosis per 10 HPF. Ki-67 1% (positive nuclear reaction). SYN+, CHR+. CKAE1/AE3+.
Nests of NET present in mucosa and submucosa and in muscularis propria.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: COLONTissue: lleocecal valveType of staining: positive/IHCStaining: Not applicableAntibody: Ki-67Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/1dftzd
title: Myodes glareolus - 120476, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1976-09-23, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/ekbs-as05
title: High grade B-cell lymphoma with MYC and BCL2 and/or BCL6 rearrangements - Male, 57 - Tissue image [5040730028006841]

description: This is the histopathological image of RETROPERITONEUM AND PERITONEUM tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: Tumor of the abdomen.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: MATURE B-CELL LYMPHOMASDiagnosis: High grade B-cell lymphoma with MYC and BCL2 and/or BCL6 rearrangementsResult of the histopathological examination: High grade B-cell lymphoma. IHC: LCA(+), CD20(+), CD3(-), Bcl-2(+/-), Bcl-6(+), c-myc(+), CD10(+), MUM-1(-), CD30(-), ALK-1(-), EBER(-), Ki67: 90%.Sample:Material: FFPECollecting method: Surgical specimenTopography: RETROPERITONEUM AND PERITONEUMOrgan: RETROPERITONEUM AND PERITONEUMTissue: Peritoneum NOSType of staining: positive/IHCStaining: Not applicableAntibody: CD 246 ALKTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/ktcd-et65
title: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS, Adnexa, NOS - Female, 62 - Tissue image [3220630024674181]

description: This is the histopathological image of OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 62Clinical description: Tumor of the right ovary.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The ovarian blood vessels are free of cancer.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANSTissue: Adnexa, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/vag5zc
title: Myodes glareolus - 19044, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1957-09-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/0bte-3688
title: Superficial spreading melanoma - Female, 37 - Tissue image [10040729541219041]

description: This is the histopathological image of UNKNOWN PRIMARY SITE tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 37Clinical description: No clinical data.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEVI AND MELANOMASDiagnosis: Superficial spreading melanomaResult of the histopathological examination: Superficial spreading melanoma: epithelioid cells, Clark II, Breslow 0,6 mm, mitotic index- 1 mitosis/1mm2, TILs- non-brisk. Complete excision.Sample:Material: FFPECollecting method: Excision of lesionsTopography: UNKNOWN PRIMARY SITEOrgan: UNKNOWN PRIMARY SITETissue: Unknown primary siteType of staining: positive/IHCStaining: Not applicableAntibody: SOX-10Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/7apa-td97
title: Invasive micropapillary carcinoma of breast - Female, 40 - Tissue image [4250730010198941]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 40Clinical description: Palpable mass in left breast.
FNAC: carcinoma cells.
Vacuum-assisted breast biopsy: invasive breast carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Invasive micropapillary carcinoma of breastResult of the histopathological examination: Invasive micropapillary breast carcinoma- NHG2. 6 mitoses por 10 HPF. Micropapillary ductal carcinoma in situ (DCIS) with necrosis, intermediate nuclear grade.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Upper-outer quadrant of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/93kf-ww93
title: Adenocarcinoma, metastatic, NOS - Female, 30 - Tissue image [9080730005568991]

description: This is the histopathological image of LIVER AND INTRAHEPATIC BILE DUCTS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 30Clinical description: History of colon carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Adenocarcinoma, metastatic, NOSResult of the histopathological examination: Liver with metastasis of colorectal adenocarcinoma. Adenocarcinoma cells: CK20+, CDX2+, SATB2+, CK7-.
CDX-2: nuclear expression.Sample:Material: FFPECollecting method: Core-needle biopsyTopography: DIGESTIVE ORGANSOrgan: LIVER AND INTRAHEPATIC BILE DUCTSTissue: LiverType of staining: positive/IHCStaining: Not applicableAntibody: CDX-2Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/vxolfw
title: Myodes glareolus - 12168, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-08-05, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/jdfs-h047
title: Hodgkin lymphoma, nodular lymphocyte predominant - Male, 66 - Tissue image [11010630088558221]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 66Clinical description: Suspicion of lymphoma.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: CHOROBA HODGKINADiagnosis: Hodgkin lymphoma, nodular lymphocyte predominantResult of the histopathological examination: Hodgkin lymphoma, nodular lymphocyte predominant (NLPHL). LP cells: CD20+, Oct2+, BOB1+, Pax5+, MUM1+, CD15-, CD30-, Cyklina D1-, EBVLMP1-, CD3-, PD1-.Sample:Material: FFPECollecting method: Excision of lesionsTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Lymph node, NOSType of staining: positive/IHCStaining: Not applicableAntibody: CD 30Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk