cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/2947
title: Search strategies for retrieval of references for effective interventions to support the resilience and mental health of frontline health and social care staff during a global health crisis and following de-escalation
title: Search strategies for RECOVER: REsilience and mental welling of frontline COVid-19 workers – a series of Evidence Reviews

description: These searches were designed constructed between April and May 2020 to support a series of evidence reviews designed to retrieve all potential references for interventions or management strategies to support the resilience and mental health of frontline health and social care staff during a global health crisis and following de-escalation. This series of evidence reviews aim to answer the following questions: 1. What research evidence is there relating to the resilience and mental health of health and social care professionals during, and after, a disease outbreak, epidemic or pandemic? (Stage 1. Scoping review); 2. What are the most effective interventions to support the resilience and mental health of these health and social care professionals, during, and after, a disease outbreak, epidemic or pandemic? (Stage 2a. Cochrane systematic review of evidence of effectiveness); and 3. What are the barriers and facilitators that may impact on the implementation of effective interventions to support the resilience and mental health of these health and social care professionals, during, and after, a disease outbreak, epidemic or pandemic? (Stage 2b. Systematic review of factors affecting implementation). The protocol search strategy was designed for MEDLINE Ovid, and adapted for use in the Cochrane Database of Systematic Reviews (CDSR) and Cochrane Central Register of Controlled Trials (CENTRAL) in the Cochrane Library, Embase Ovid, Web of Science Indexes, PsycINFO Ovid, CINAHL EBSCO (Cumulative Index to Nursing and Allied Health Literature), Global Index Medicus databases, the WHO Library Database (WHO IRIS) (Institutional Repository for Information Sharing), US National Institutes of Health Ongoing Trials Register ClinicalTrials.gov, the World Health Organization (WHO) International Clinical Trials Registry Platform (ICTRP), and Google Scholar using the 2dSearch interface. Each search strategy contains separate search lines and incorporates a combination of uncontrolled vocabulary/keywords and controlled vocabulary terms for (a) resilience and mental health interventions, (b) health and social care personnel, and (c) pandemics, epidemics and health outbreaks. Boolean operators and proximity operators were used to maximise sensitivity and recall where available. Publication date were restricted to publication from 2002 onwards using date limiter functions.
description: Text file (UTF-8 coding) containing 11 separate search strategies.
DOI: 10.7488/ds/2285
title: Sequential Ionic Layer Adsorption and Reaction (SILAR) deposition of Bi4Ti3O12 on TiO2: an enhanced and stable photocatalytic system for water purification

description: A new method to produce bismuth titanate – titanium dioxide composites by modification of a TiO2 film deposited on a variety of different glass substrates is reported. Using a simple SILAR method, BiOBr may be deposited upon TiO2 surfaces, which upon heating forms a closely intercalated structure of bismuth titanate (Bi4Ti3O12, BTO) and TiO2. This new method expands the scope of the SILAR process, which is typically restricted to materials which can be formed from soluble precursors. This composite material has undergone a thorough materials characterisation to confirm the absence of the BiOBr precursor, and the formation of the new bismuth titanate phase. The electronic structure of the heterojunction formed has also been investigated by valence band XPS and diffuse reflectance measurements, and a plausible band structure proposed. The immobilised composites have then been applied to the photocatalytic degradation of organic pollutants and bactericidal testing, as well as stability tests and identification of the key reactive species. Further photocatalytic studies have been carried out on this material in a synthetic wastewater medium, taking a step towards application under real-world conditions.
DOI: 10.7488/ds/2939
title: GenOMICC Covid-19 critical illness summary statistics non-European ancestries

description: Non-European ancestries GWAS summary statistics for Covid-19 critical illness from the GenOMICC study
DOI: 10.7488/ds/2601
title: HadCM3 Model data used in the article "Disentangling the causes of the 1816 European year without a summer" by Schurer, Andrew; Hegerl, Gabriele; Luterbacher, Juerg; Broennimann, Stefan; Cowan, Tim; Tett, Simon; Zanchettin, Davide; Timmreck, Claudia

description: Abstract: The European summer of 1816 has often been referred to as a “year without a summer” due to anomalously cold conditions and unusual wetness, which led to widespread famines and agricultural failures. The cause has often been assumed to be the eruption of Mount Tambora in April 1815, however this link has not, until now, been proven. Here we apply state-of-the-art event attribution methods to quantify the contribution by the eruption and random weather variability to this extreme European summer climate anomaly. By selecting analogue summers that have similar sea-level-pressure patterns to that observed in 1816 from both observations and unperturbed climate model simulations, we show that the circulation state can reproduce the precipitation anomaly without external forcing, but can explain only about a quarter of the anomalously cold conditions. We find that in climate models, including the forcing by the Tambora eruption makes the European cold anomaly up to 100 times more likely, while the precipitation anomaly became 1.5-3 times as likely, attributing a large fraction of the observed anomalies to the volcanic forcing. Our study thus demonstrates how linking regional climate anomalies to large-scale circulation is necessary to quantitatively interpret and attribute post-eruption variability. The Model data consists 50 HadCM3 Model simulations with volcanic forcing for the period 01/12/1814 to 01/12/1816. The dataset is divided into atmosphere monthly mean and ocean monthly mean files. With each containing 24 monthly values for each of the 50 simulations. The files are in the UK Metoffice pp format. This can be read using the iris python package: https://scitools.org.uk/iris/docs/latest/ Example_script.py is an example of a simple python script which reads the model data.
DOI: 10.7488/ds/2306
title: Supplementary data to "Ligand binding site structure influences the evolution of protein complex function and topology" by G. Abrusan and J.A. Marsh

description: It has been suggested that the evolution of protein complexes is significantly influenced by stochastic, non-adaptive processes. Using ligand binding as a proxy of function, we show that the structure of ligand-binding sites significantly influences the evolution of protein complexes. We show that homomers with multi-chain binding sites (MBS) evolve new functions slower than monomers or other homomers, and those binding cofactors and metals have more conserved quaternary structure than other homomers. Moreover, the ligands and ligand-binding pockets of homologous MBS homomers are more similar than monomers and other homomers. Our results suggest strong evolutionary selection for quaternary structure in cofactor-binding MBS homomers, whereas neutral processes are more important in complexes with single-chain binding sites. They also have pharmacological implications, suggesting that complexes with single-chain binding sites are better targets for selective drugs, while MBS homomers are good candidates for broad-spectrum antibiotic and multitarget drug design.
DOI: 10.7488/ds/2710
title: The importance of physiological, structural and trait responses to drought stress in driving spatial and temporal variation in GPP across Amazon forests

description: Folders contain experimental model runs outlined in Flack-Prain et al., 2019, whereby the (i) LAI, (ii) meteorology, (iii) rooting properties, (iv) soil, and (v) leaf photosynthetic capacity for each plot were alternated to that of all other plots. Plots included in analysis are CAX04, CAX06, TAM05, TAM06, KEN01, KEN02, TAN05 (Tanguro). File names are ordered PLOT1_PLOT2 where PLOT1 is focal plot, and PLOT2 is the plot of the alternated factor. "_down" and "_up" are model runs under upper and lower LAI standard error. file headers are as follows Daily: mod_ET(mm/d) Modelled evapotranspiration mod_LE(MJ/m2/d) Modelled latent energy (latent heat flux) mod_SoilE(mm/d) Modelled soil evaporation mod_can_evap(mm/d) Modelled canopy evaporation (evaporated intercepted rainfall) Soil_WP(MPa) Weighted soil water ptential plant_resistance Plant resistance to waterflow canopy_soil_resistance Canopy weighted soil+root hydraulic resistance to water flow LSC(mmol/m2/s/Mpa) Leaf-soil conductance sapflow(mm/d) Amount of water that moves through LSC continuum mean-LAI(m2m-2) Mean Leaf Area Index Flux: Ra Autotrophic respiration Af Carbon allocated to foliage Aw Carbon alloacted to stem Ar Carbon allocated to roots Acr Carbon allocated to coarse roots Lf Litterfall from foliage Lw Litterfall from stem Lr Litterfall from roots Lcr Litterfall from coarse roots Rh1 Heterotrophic respiration (litter) Rh2 Heterotrophic respiration (soil) D Decomposition G Gross Primary Productivity neesum Net Ecosystem Exchange sumresp total_ET(mm/d) resp_main Maintenance respiration resp_growth Growth respiration resp_l Leaf maintenance respiration resp_s Stem maintenance respiration resp_r Root maintenance respiration resp_cr Coarse root maintenance respiration resp_l_g Leaf growth respiration resp_s_g Stem growth respiration resp_r_g Root growth respiration resp_cr_g Coarse root growth respiration alloc_to_labile Carbon allocated to labile Field data used in model calibration and validation can be accessed via Doughty et al., 2015. Flack-Prain, S., Meir, P., Malhi, Y., Smallman, T. L., & Williams, M. The importance of physiological, structural and trait responses to drought stress in driving spatial and temporal variation in GPP across Amazon forests. https://doi.org/10.5194/bg-2019-175 Doughty, C. E., Metcalfe, D. B., Girardin, C. A. J., Amézquita, F. F., Cabrera, D. G., Huasco, W. H., ... & Feldpausch, T. R. (2015). Drought impact on forest carbon dynamics and fluxes in Amazonia. Nature, 519(7541), 78. doi:10.1038/nature14213
DOI: 10.7488/ds/2566
title: Data supporting Luciano et al. The influence of X chromosome variants on trait neuroticism.

description: Data supporting the paper Luciano M, Davies G, Summers KM, Hill WD, Hayward C, Liewald DC, Porteous DJ, Gale CR, McIntosh AM, Deary IJ (2019) The influence of X chromosome variants on trait neuroticism. Molecular Psychiatry doi:10.1038/s41380-019-0388-2.
DOI: 10.7488/ds/2845
title: Adaptive Sum of Markov Chains for Modelling 3D Blockage in mmWave V2I Communications

description: This data set contains the MATLAB software used to reproduce results in the paper entitled "Adaptive Sum of Markov Chains for Modelling 3D Blockage in mmWave V2I Communications". It has been accepted for publication by IEEE Transactions on Vehicular Technology in May 2020.
DOI: 10.7488/ds/2616
title: Unnormalised raw count estimates for the sheep gene expression atlas dataset

description: This dataset contains the estimated unnormalised raw counts generated using Kallisto for all RNA-Seq libraries included in the sheep gene expression atlas. ## Format ## The plain text file contains 1,954 rows of text-delimited data (multiple header rows).
DOI: 10.7488/ds/2731
title: Captains Bar Façade

description: A Scan of Captains Bar and surrounding buildings, 2 Scan locations, captured with a BLK 360, registered using Autodesk Recap Pro, exported to .e57 file format.
DOI: 10.7488/ds/2554
title: Factors associated with sharing email information and mental health survey participation in large population cohorts

description: Genome-wide association study summary statistics of email contact and Mental Health Questionnaire participation in UK Biobank. Data in support of the manuscript: "Factors associated with sharing email information and mental health survey participation in large population cohorts". **ABSTRACT** BACKGROUND People who opt to participate in scientific studies tend to be healthier, wealthier, and more educated than the broader population. While selection bias does not always pose a problem for analysing the relationships between exposures and diseases or other outcomes, it can lead to biased effect size estimates. Biased estimates may weaken the utility of genetic findings because the goal is often to make inferences in a new sample (such as in polygenic risk score analysis). METHODS We used data from UK Biobank, Generation Scotland, and Partners Biobank and conducted phenotypic and genome-wide association analyses on two phenotypes that reflected mental health data availability: (1) whether participants were contactable by email for follow-up and (2) whether participants responded to follow-up surveys of mental health. RESULTS In UK Biobank, we identified nine genetic loci associated (P &lt; 5 × 10-8) with email contact and 25 loci associated with mental health survey completion. Both phenotypes were positively genetically correlated with higher educational attainment and better health and negatively genetically correlated with psychological distress and schizophrenia. One SNP association replicated along with the overall direction of effect of all association results. CONCLUSIONS Recontact availability and follow-up participation can act as further genetic filters for data on mental health phenotypes.
description: adams-ukb-email_contact-1812.txt.gz: GWAS summary statistics of email contact in UK Biobank. adams-ukb-mhq_participation-1812.txt.gz: GWAS summary statistics of Mental Health Questionnaire participation in UK Biobank README: information on file headers and GWAS model
DOI: 10.7488/ds/2600
title: A Robust, Compact SPICE Model for Piezoelectric Ultrasonic Transducer Array Elements

description: This Dataset supports an conference proceeding article "A Robust, Compact SPICE Model for Piezoelectric Ultrasonic Transducer Array Elements" published through IEEE SENSORS 2018. DOI:10.1109/ICSENS.2018.8589814 . . . ## Abstract ## A new high-accuracy SPICE model for piezoelectric ultrasonic transducer array elements has been developed using advanced non-linear regression curve fitting techniques. This allows integrated design of ultrasonic array elements and CMOS circuitry, avoiding difficulties with hybrid models. Simulated and measured data show improved quality of fit across a wide frequency range when compared to a conventional model. By specifying a frequency range of interest, the non-isolated modes common in practical ultrasonic array elements can also be modelled, providing a route to the use of Monte Carlo AC simulation. This has important implications for the many future devices that will be built using CMOS circuitry integrated with ultrasonic arrays. ## Content ## This dataset includes the row impedance data of two ultrasonic transducers mentioned in the publication (RUI_row data.mat), data for plotting Figures (Fig XX. fig) and additional supporting data which was not included in the publication (rest of the .fig files). ## File format ## Files with filename extension .fig or .mat can be opened using MATLAB.
DOI: 10.7488/ds/2360
title: The effects of oblique waves and currents on the loadings and performance of tidal turbines

description: Tidal energy exploitation is at an early deployment stage and costs need to be reduced to improve the long term economic viability of the sector. High costs of tidal turbines are, in part, the result of load uncertainties, which lead to the use of high factors of safety in the design to ensure survival. One of the most important causes of uncertainty is hydrodynamic loadings. To date, most of the scaled model experiments with horizontal axis turbines investigating this issue have been carried out with collinear wave and current directions. To the authors’ knowledge, the work presented herein is the first experimental investigation of a horizontal axis turbine model subjected to combined oblique waves and current. Turbine performance and loading are measured for a 1:15 scale model tested in the FloWave circular, combined wave and current basin at the University of Edinburgh (UK). Three different flow directions were tested and each of them were also combined with regular waves in three different directions non-collinear with the flow. Fifteen physical quantities were measured including flow velocity, rotor and foundation loads and turbine speed. Characterisation of loads and turbine performance in those oblique current and wave conditions are presented. Waves affect means and standard deviation of rotor power and thrust, but off-axis waves are associated with lower thrust loads than head-on waves. Compared to current only, rotor torque and thrust standard deviations are higher in the presence of waves and almost twice as high when the wave crest is parallel to the rotor plan.
DOI: 10.7488/ds/2853
title: Investigating PDC Flow using DEM Simulations.
title: Pyroclastic Density Currents, understanding the deadly flow from volcanic eruptions

description: Pyroclastic Density Currents are hazardous, geophysical flows arising from volcanic activity that pose a significant risk to communities in close proximity to volcanoes. Their destructive nature is partly attributed to their incredible mobility, which allows them to reach exceptional distances. Due to their complexity, limited optical depth, unpredictable nature and dangerous conditions, the study of the dynamics of PDCs relies on a combination of field studies, experiments and numerical modelling. By implementing models that investigate the energy dissipation occurring at the particle scale, a better understanding of their mobility and runout can be achieved. This report uses a 2D Discrete Element Method approach with a non-cohesive contact model to simulate granular flow down a rough inclined plane with changing inclinations between 20-30 degrees to investigate real aspects of changing topography and its effect on runout distance. Higher inclinations had the greatest kinetic energy and during deposition, the uppermost layers of flow had the longest runout. The depositional phase during deceleration on horizontal slopes shows a backward accretion of particles, consistent with other findings. The results validated conceptual models derived from field studies at Mt Merapi and are in agreement with previous DEM models. The applicability of these results extends to rockfall avalanches that share a similar particle nature.
DOI: 10.7488/ds/2604
title: Data for 'An Investigation into the Locality Effects Found in Dutch and Frisian Specificational Copular Sentences'

description: This dataset contains the data (SPSS .sav file) used in the MSc by Research (Linguistics) dissertation 'An Investigation into the Locality Effects Found in Dutch and Frisian Specificational Copular Sentences'. This data was collected from Dutch and Frisian participants and shows how they respond to specificational copular sentences when they are embedded under modal and raising verbs. Two tests were conducted: the first was a cloze test where participants had to fill in the missing finite verb in the sentence. This tested whether participants used a finite verb which agrees with the first noun phrase or the second noun phrase. The second test was a judgement test where participants had to rate different versions of the same sentence where the finite verb either agreed with the first noun phrase or the second noun phrase.
DOI: 10.7488/ds/2564
title: Data supporting Hagenaars & Hill et al. Genetic prediction of male pattern baldness. PLOS Genetics

description: Data supporting the paper Hagenaars & Hill et al. "Genetic prediction of male pattern baldness". PLOS Genetics (2017). doi: 10.1371/journal.pgen.1006594. ## Note re working with data ## The file "Hagenaars2017_UKB_MPB_summary_results_10Feb2016.txt" contains seventeen million rows. Users will encounter difficulties if they attempt to view the contents of this file using Notepad++ or Notepad. Microsoft Excel 2016 will not display all rows, only the first one million or so rows. This is a space-delimited file. ### Note re source ### The files "Hagenaars2017_UKB_MPB_summary_results_10Feb2016.txt" and "Hagenaars2017_UKB_MPB_summary_results_Xchr_15Feb2017.txt" are identical to the two files of the same names previously available on the website of the Centre for Cognitive Ageing and Cognitive Epidemiology (CCACE) http://www.ccace.ed.ac.uk/node/335 as part of the zip archive "Hagenaars2017_UKB_MPB_summary_results.zip".
DOI: 10.7488/ds/2717
title: Dynamic and static quenching of 2-aminopurine fluorescence by the natural DNA nucleotides in solution

description: 2-aminopurine (2AP) is a responsive fluorescent base analogue that is used widely as a probe of the local molecular environment in DNA. The ability of 2AP to report changes in local conformation and base-stacking interactions arises from the efficient quenching of its fluorescence by the natural DNA bases. However, the mechanism of this inter-base quenching remains imperfectly understood. Two previous studies of the collisional quenching of 2AP by the natural bases, in different buffer solutions, showed that dynamic quenching efficiency depends on the identity of the natural base, but disagreed on the relative quenching efficiencies of the bases. We report a comprehensive investigation of inter-base quenching of 2AP by the natural nucleoside monophosphates (NMPs), replicating the buffer conditions used in the previous studies. Using time-resolved fluorescence measurements to distinguish between dynamic and static quenching, we find that the dynamic quenching rate constants of the different bases show a consistent trend across both buffers, and this is in line with a charge-transfer mechanism. Time-resolved measurements also provide insight into static quenching, revealing formation of 2AP-NMP ground-state complexes in which 2AP displays a very short fluorescence lifetime, comparable to that seen in oligonucleotides. In these complexes, the dependence of the rate of quenching on the partner base also supports a charge-transfer mechanism.
DOI: 10.7488/ds/2850
title: The proteomic landscape of centromeric chromatin reveals an essential role for the Ctf19CCAN complex in meiotic kinetochore assembly

description: Dataset in support of manuscript "The proteomic landscape of centromeric chromatin reveals an essential role for the Ctf19CCAN complex in meiotic kinetochore assembly" in submission to Mol. Cell. The dataset comprises of a set of interactive volcano plots related to the figures in the manuscript. These files allow interaction with data. Press any element of the legend to disable the indicated subset of proteins. Hover over each datapoint to display protein names.
description: All files are interactive volcano files. Can be opened with any internet browser.