cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e168982v1
title: Data and Code for Child-to-parent Intergenerational Transfers, Social Security and Child Wealth-building

description: In this study, I explore the impact of social security eligibility on transfers between adult children and elderly parents and the resulting impact on wealth building among adult children. I also describe these relationships across different racial and socioeconomic groups. I use data from the Panel Study of Income Dynamics (PSID) and a regression discontinuity approach where I describe the outcomes before and at the parents social security eligibility age. The main findings show that almost all groups reduce transfers at the threshold age, but the reduction in the probability that a parent receives transfers is stronger for economically disadvantaged groups. I also find that wealth of adult children increases at the threshold age and this increase is strongest for children of low-income parents. These findings appear to support the hypothesis that, by reducing the reliance of parents on their adult children, social security may contribute to wealth building among the adult-children generation. <br><br>
DOI: 10.21429/hs9c-jj02
title: Canopy Water Balance Output Data for 5 sites in Hawai'i from 2016-2019

description: The outputs of two versions of the Single-Layer Wet Canopy Water Balance model. Parameters include cloud water interception, evaporation of rainwater or fog water from wet canopy (interception evaporation), and canopy water storage.
DOI: 10.21429/as5e-6e02
title: Calibrated Fog Gauge Data for 5 sites in Hawai'i from 2016-2019

description: Data of a calibrated fog gauge at each of the five stations. Parameters include total fog water collection, wind-driven rain collection, fog-only water collection, cloud water flux, and cloud liquid water content.
DOI: 10.21429/ezae-7t56
title: Canopy Water Balance Input Data for 5 sites in Hawai'i from 2016-2019

description: Measurements of fog, fog interception parameters, and climate variables such as wind, radiation, temperature, and humidity, along with vegetation data, to test a model to estimate CWI as a function of fog-water movement and vegetation characteristics.
DOI: 10.6084/m9.figshare.3761562.v2202
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.34740/kaggle/dsv/3545701
title: Maize_in_Field_Dataset
DOI: 10.5281/zenodo.6502780
title: Manhattan and QQ plots of GWAS on salt stress responses in root system architecture parameters of wild tomato (S. pimpinellifolium)

description: The population of +/2 200 accessions of wild tomato was screened with the protocol described here with the only exception that the plants were transferred 4 days after germination (rather than 3 - described in the protocol). The images were analyzed using the SmartRoot for days 0, 1, 2, 3, and 4 after transfer to treatment plates (0 or 100 mM NaCl, 1/4 MS, 0.5% sucrose, 0.1% MES, 1% Dashin agar). The data analysis was performed as described here, while the pareto front calculations were done according to Chandrasekhar & Julkowska paper (preprint here). The GWAS was performed using the ASReml script similar to Awlia et al. (2021). The raw GWAS outputs can be found here. This dataset represents Manhattan plots and QQ plots made out of the data.
DOI: 10.5281/zenodo.6502779
title: Manhattan and QQ plots of GWAS on salt stress responses in root system architecture parameters of wild tomato (S. pimpinellifolium)

description: The population of +/2 200 accessions of wild tomato was screened with the protocol described here with the only exception that the plants were transferred 4 days after germination (rather than 3 - described in the protocol). The images were analyzed using the SmartRoot for days 0, 1, 2, 3, and 4 after transfer to treatment plates (0 or 100 mM NaCl, 1/4 MS, 0.5% sucrose, 0.1% MES, 1% Dashin agar). The data analysis was performed as described here, while the pareto front calculations were done according to Chandrasekhar & Julkowska paper (preprint here). The GWAS was performed using the ASReml script similar to Awlia et al. (2021). The raw GWAS outputs can be found here. This dataset represents Manhattan plots and QQ plots made out of the data.
DOI: 10.5066/p9okd93i
title: Model Archive Summary for turbidity derived sediment concentration at USGS station 11337190 San Joaquin River at Jersey Point, CA
DOI: 10.6084/m9.figshare.19678830
title: 3-chromosome genome for Example2

description: 3-chromosome genome for Example2
DOI: 10.6084/m9.figshare.19678830.v1
title: 3-chromosome genome for Example2

description: 3-chromosome genome for Example2
DOI: 10.5281/zenodo.6430612
title: End-Century Daily Snow Water Equivalent (SWE) Projections with LSTM model

description: CMIP5 climate models: CESM-CAM5 (CESM), CNRM-CM5 (CNRM), EC-EARTH (EC), HadGEM2-ES (HadGEM), MIROC5, and GFDL-ESM2M (GFDL). LOCA downscaled forcings are used as inputs to the LSTM model. 'RCP' stands for RCP8.5 and 'hist' for historical simulations. Corresponding code repository: https://github.com/ShihengDuan/code-SWE
DOI: 10.5281/zenodo.6430611
title: End-Century Daily Snow Water Equivalent (SWE) Projections with LSTM model

description: CMIP5 climate models: CESM-CAM5 (CESM), CNRM-CM5 (CNRM), EC-EARTH (EC), HadGEM2-ES (HadGEM), MIROC5, and GFDL-ESM2M (GFDL). LOCA downscaled forcings are used as inputs to the LSTM model. 'RCP' stands for RCP8.5 and 'hist' for historical simulations. Corresponding code repository: https://github.com/ShihengDuan/code-SWE
DOI: 10.6084/m9.figshare.19678845
title: 3D printer selection

description: A 3D printer, the most crucial component of additive manufacturing, is a new technology that can transform the traditional production, supply, and logistics systems. However, decision-makers have not had sufficient courage and determination to actualize this transformation yet, as employing 3D printers in manufacturing processes instead of traditional production is a critical, vital, and irreversible decision which requires extensive information and a high level of experience. Hence, supporting the decision-makers with a theoretical perspective and managerial implications can help practitioners take responsibility and gain the courage to decide on this transformation. The current paper aims to fill the two severe and significant gaps in the literature. It proposes a robust, practical, and reliable decision-making tool to solve decision-making problems related to 3D printer selection.
DOI: 10.6084/m9.figshare.19678845.v1
title: 3D printer selection

description: A 3D printer, the most crucial component of additive manufacturing, is a new technology that can transform the traditional production, supply, and logistics systems. However, decision-makers have not had sufficient courage and determination to actualize this transformation yet, as employing 3D printers in manufacturing processes instead of traditional production is a critical, vital, and irreversible decision which requires extensive information and a high level of experience. Hence, supporting the decision-makers with a theoretical perspective and managerial implications can help practitioners take responsibility and gain the courage to decide on this transformation. The current paper aims to fill the two severe and significant gaps in the literature. It proposes a robust, practical, and reliable decision-making tool to solve decision-making problems related to 3D printer selection.
DOI: 10.5066/p9e0460s
title: Model Archive Summary for Turbidity Derived Suspended-Sediment Concentration at USGS station 11447903 Georgiana Slough Near Sacramento River, CA (2010-2015)
DOI: 10.5066/p9e7brj0
title: Model Archive Summary for Turbidity Derived Suspended-Sediment Concentration at USGS station 11304810 San Joaquin River Below Garwood Bridge at Stockton, CA (2010-2014)
DOI: 10.5281/zenodo.6500401
title: Gene/Protein BridgeDb ID Mapping Database (Ensembl Metazoa 49)

description: Ensembl Metazoa 49 derived ID mapping databases for use with BridgeDb.<br> The scripts used to create these databases based on Ensembl BioMart can be found at https://github.com/bridgedb/create-bridgedb-genedb. This work was funded by the FAIRplus project (grant agreement no 802750) and NWO Open Science Fund (grant no 203.001.121).<br>
description: We would like to thank Helena Basaric, who contributed to improving the scripts used to generate these databases.
DOI: 10.5281/zenodo.6500400
title: Gene/Protein BridgeDb ID Mapping Database (Ensembl Metazoa 49)

description: Ensembl Metazoa 49 derived ID mapping databases for use with BridgeDb.<br> The scripts used to create these databases based on Ensembl BioMart can be found at https://github.com/bridgedb/create-bridgedb-genedb. This work was funded by the FAIRplus project (grant agreement no 802750) and NWO Open Science Fund (grant no 203.001.121).<br>
description: We would like to thank Helena Basaric, who contributed to improving the scripts used to generate these databases.
DOI: 10.5281/zenodo.6502115
title: Gene/Protein BridgeDb ID Mapping Database (Ensembl 105)

description: Ensembl 105 derived ID mapping databases for use with BridgeDb. The scripts used to create these databases based on Ensembl BioMart can be found at https://github.com/bridgedb/create-bridgedb-genedb. This work was funded by the FAIRplus project (grant agreement no 802750) and NWO Open Science Fund (grant no 203.001.121).
description: We would like to thank Helena Basaric, who contributed to improving the scripts used to generate these databases.
DOI: 10.5281/zenodo.6502114
title: Gene/Protein BridgeDb ID Mapping Database (Ensembl 105)

description: Ensembl 105 derived ID mapping databases for use with BridgeDb. The scripts used to create these databases based on Ensembl BioMart can be found at https://github.com/bridgedb/create-bridgedb-genedb. This work was funded by the FAIRplus project (grant agreement no 802750) and NWO Open Science Fund (grant no 203.001.121).
description: We would like to thank Helena Basaric, who contributed to improving the scripts used to generate these databases.
DOI: 10.7944/p9fnbcp9
title: Relative effects of sample size, detection probability, and study duration on estimation in integrated population models

description: Understanding mechanistic causes of population change is critical for managing and conserving species. Integrated population models (IPMs) allow for quantifying population changes while directly relating environmental drivers to vital rates, but power of IPMs to detect trends and environmental effects on vital rates remains understudied. We simulated data for an IPM under 41 scenarios to determine power to detect trends and environmental effects on vital rates based on study duration, sample size, detection probability, and effect size. Our results indicated that temporal duration of a study and effect size, rather than sample size of each individual data set or detection probability, had the greatest influence on the power to identify trends in adult survival and fecundity. When using only 10 years of data, we were unable to identify a 50% increase in adult survival but were able to identify this increase with 22 years of data. When using only capture-recapture data in a traditional Cormack-Jolly-Seber analysis, we lacked sufficient power to identify trends in survival, and power of the Cormack-Jolly-Seber model was always less than the IPM. The IPM had greater power to identify trends and environmental effects on fecundity (e.g., we detected a 58% change in fecundity using 12 years of data). Models with effects of environmental variables on vital rates had less power than trends, likely due to increased annual variation in the vital rate when modeling responses to environmental effects that varied by year. Lack of power in the Cormack-Jolly-Seber analysis could be due to the relatively small variability in adult survival compared to fecundity given the life history of our simulated species. As interannual variation in environmental conditions will likely increase with climate change, this type of analysis can help inform the study duration needed, which may be a shifting target given future climate uncertainty and the complex nature of environmental correlations with demography.
DOI: 10.25345/c5j09w794
title: MassIVE MSV000089329 - Metabolomic analysis of an inducible antimicrobial activity in Bacillus spp. by molecular networking
title: In previous research, we have discovered a phenomenon of inducible antagonistic activity in strains of the order Bacillales in which, large inhibition zones were produced against different pathogens when growing in the presence of the chemical compound triphenyl tetrazolium chloride (TTC), where Bacillus subtilis NCIB3610 and Bacillus cereus EA-CB1047 show high activity against the phytopathogen Ralstonia solanacearum. The exact structure of these compounds has not been so far elucidated; therefore, this project aims to clarify whether the changes in the metabolic profiles of B. subtilis NCIB3610 and B. cereus EA-CB1047 correspond to biotransformation reactions of TTC or might be products of any additional biosynthetic process not yet revealed, using molecular networks approaches.
DOI: 10.3886/e158961v1-116580
title: Statistics Anxiety, Feeling about Statistics, and Performance in Introductory Statistics

description: The survey contained demographic information of participants (gender, ethnicity, major, and past experience with statistics), an abbreviated form of the Statistics Anxiety Rating Scale questionnaire (STARS; Cruise et al., 1985), an adopted form of the Perceived Difficulty Assessment Questionnaire (PDAQ; Ribeiro & Yarnal, 2010), a measure of perceived usefulness of the instructor, a measure of students’ feeling about statistics, and an academic outcome variable consisting of students’ self-reported first exam score.
DOI: 10.3886/e168982v1-116581
title: Data and Code for Child-to-parent Intergenerational Transfers, Social Security and Child Wealth-building

description: In this study, I explore the impact of social security eligibility on transfers between adult children and elderly parents and the resulting impact on wealth building among adult children. I also describe these relationships across different racial and socioeconomic groups. I use data from the Panel Study of Income Dynamics (PSID) and a regression discontinuity approach where I describe the outcomes before and at the parents social security eligibility age. The main findings show that almost all groups reduce transfers at the threshold age, but the reduction in the probability that a parent receives transfers is stronger for economically disadvantaged groups. I also find that wealth of adult children increases at the threshold age and this increase is strongest for children of low-income parents. These findings appear to support the hypothesis that, by reducing the reliance of parents on their adult children, social security may contribute to wealth building among the adult-children generation. <br><br>
DOI: 10.14272/icdiqorylkodsx-uhfffaoysa-n.1
title: C59H63N35O21
title: InChI=1S/C59H63N35O21/c95-45-66-13-68-34-35-72(47(68)97)17-76-38-39-80(51(76)101)21-84-42-43-88(55(84)105)25-92-57(107)90-23-86-41-40-82(53(86)103)19-78-37-36-74(49(78)99)15-70(45)33-32(66)67-14-69(34)48(98)73(35)18-77(38)52(102)81(39)22-85(42)56(106)89(43)26-93-58(108)91(24-87(41)54(104)83(40)20-79(37)50(100)75(36)16-71(33)46(67)96)44(90)59(92,93)114-12-27-11-65(64-61-27)4-6-112-8-10-113-9-7-111-5-3-60-28-1-2-29(94(109)110)31-30(28)62-115-63-31/h1-2,11,32-44,60H,3-10,12-26H2

description: This dataset contains experimental data from a sample (InChI=1S/C59H63N35O21/c95-45-66-13-68-34-35-72(47(68)97)17-76-38-39-80(51(76)101)21-84-42-43-88(55(84)105)25-92-57(107)90-23-86-41-40-82(53(86)103)19-78-37-36-74(49(78)99)15-70(45)33-32(66)67-14-69(34)48(98)73(35)18-77(38)52(102)81(39)22-85(42)56(106)89(43)26-93-58(108)91(24-87(41)54(104)83(40)20-79(37)50(100)75(36)16-71(33)46(67)96)44(90)59(92,93)114-12-27-11-65(64-61-27)4-6-112-8-10-113-9-7-111-5-3-60-28-1-2-29(94(109)110)31-30(28)62-115-63-31/h1-2,11,32-44,60H,3-10,12-26H2). The datasets from the following experiments are available: 1H nuclear magnetic resonance spectroscopy (1H NMR) ion mobility spectrometry-mass spectrometry (IMSMS) high-performance liquid chromatography (HPLC)
DOI: 10.14272/icdiqorylkodsx-uhfffaoysa-n/chmo0000593
title: 1H nuclear magnetic resonance spectroscopy (1H NMR) ()
title: InChI=1S/C59H63N35O21/c95-45-66-13-68-34-35-72(47(68)97)17-76-38-39-80(51(76)101)21-84-42-43-88(55(84)105)25-92-57(107)90-23-86-41-40-82(53(86)103)19-78-37-36-74(49(78)99)15-70(45)33-32(66)67-14-69(34)48(98)73(35)18-77(38)52(102)81(39)22-85(42)56(106)89(43)26-93-58(108)91(24-87(41)54(104)83(40)20-79(37)50(100)75(36)16-71(33)46(67)96)44(90)59(92,93)114-12-27-11-65(64-61-27)4-6-112-8-10-113-9-7-111-5-3-60-28-1-2-29(94(109)110)31-30(28)62-115-63-31/h1-2,11,32-44,60H,3-10,12-26H2

description: dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR) 1H NMR (500 MHz, D2O) δ 8.08 (s, 1H), 7.89 (d, J = 9.5 Hz, 1H), 6.08 (d, 1H), 5.84-5.23 (m, 30H), 4.39-3.61 (m, 30H).due to the complex structure, the total amount of protons could not be confirmed by a clear assignment
DOI: 10.14272/icdiqorylkodsx-uhfffaoysa-n/chmo0000499
title: ion mobility spectrometry-mass spectrometry (IMSMS) ()
title: InChI=1S/C59H63N35O21/c95-45-66-13-68-34-35-72(47(68)97)17-76-38-39-80(51(76)101)21-84-42-43-88(55(84)105)25-92-57(107)90-23-86-41-40-82(53(86)103)19-78-37-36-74(49(78)99)15-70(45)33-32(66)67-14-69(34)48(98)73(35)18-77(38)52(102)81(39)22-85(42)56(106)89(43)26-93-58(108)91(24-87(41)54(104)83(40)20-79(37)50(100)75(36)16-71(33)46(67)96)44(90)59(92,93)114-12-27-11-65(64-61-27)4-6-112-8-10-113-9-7-111-5-3-60-28-1-2-29(94(109)110)31-30(28)62-115-63-31/h1-2,11,32-44,60H,3-10,12-26H2

description: dataset for ion mobility spectrometry-mass spectrometry (IMSMS) ESI-MS: [M + Na]+ Calcd. for: 1620.486; found: 1620.483.
DOI: 10.14272/icdiqorylkodsx-uhfffaoysa-n/chmo0001009
title: high-performance liquid chromatography (HPLC) ()
title: InChI=1S/C59H63N35O21/c95-45-66-13-68-34-35-72(47(68)97)17-76-38-39-80(51(76)101)21-84-42-43-88(55(84)105)25-92-57(107)90-23-86-41-40-82(53(86)103)19-78-37-36-74(49(78)99)15-70(45)33-32(66)67-14-69(34)48(98)73(35)18-77(38)52(102)81(39)22-85(42)56(106)89(43)26-93-58(108)91(24-87(41)54(104)83(40)20-79(37)50(100)75(36)16-71(33)46(67)96)44(90)59(92,93)114-12-27-11-65(64-61-27)4-6-112-8-10-113-9-7-111-5-3-60-28-1-2-29(94(109)110)31-30(28)62-115-63-31/h1-2,11,32-44,60H,3-10,12-26H2

description: dataset for high-performance liquid chromatography (HPLC) Analytical HPLC trace of CB7-NBD recorded at 475 nm using a mixture of 35 % acetonitrile/65 % 0.1 % TFA aqueous as eluent.
DOI: 10.18112/openneuro.ds003823.v1.1.0
title: Heart rate variability biofeedback training and emotion regulation
DOI: 10.48704/mo4zr9p
title: Mo4Zr9P
DOI: 10.48704/mo4zr9b
title: Mo4Zr9B
DOI: 10.48704/al5co2
title: Al5Co2
DOI: 10.6084/m9.figshare.16646020.v4
title: Network: czo, Domain: boulder

description: MacroSheds timeseries data, shapefiles, and metadata for domain: boulder, within network: czo
DOI: 10.6084/m9.figshare.16646095.v3
title: Network: czo, Domain: calhoun

description: MacroSheds timeseries data, shapefiles, and metadata for domain: calhoun, within network: czo
DOI: 10.5281/zenodo.6502943
title: Neural motif discovery manuscript reports

description: This repository holds the supplementary data for the motif and motif-syntax/grammar discovery tool in the associated manuscript. <strong>reports.tar.gz</strong><br> Contains the motif and motif-syntax/grammar analysis reports as HTML files for all analyzed transcription factors (TFs). See included README for more details. <strong>models.tar.gz</strong><br> Contains the fine-tuned models. Each TF, this includes the fine-tuned single-task profile model for each task/experiment, and the fine-tuned multi-task profile model over all experiments. <strong>motifs.tar.gz</strong><br> Contains the motifs discovered by TF-MoDISco on each profile model, for both the profile and counts heads. This includes the PFM, the CWM, and eCWM. This also includes the motifs that have been merged across the profile/counts heads (i.e. `cpmerged`). <strong>motif_hits.tar.gz</strong><br> For each experiment, motif instances were called using FiNeMo on the best-performing model. Motif instances are either called for the profile head, count head, or merged across both heads. Each subdirectory includes: 1) the collapsed and filtered motif instances; 2) the set of peaks for which they come from; 3) a file matching motif instances to their peaks; 4) the co-occurrence of multiple motifs in peaks; and 5) the distance distribution of motif pairs which significantly co-occur. Unless stated otherwise, collapsing is done over all motif patterns.
DOI: 10.5281/zenodo.6502942
title: Neural motif discovery manuscript reports

description: This repository holds the supplementary data for the motif and motif-syntax/grammar discovery tool in the associated manuscript. <strong>reports.tar.gz</strong><br> Contains the motif and motif-syntax/grammar analysis reports as HTML files for all analyzed transcription factors (TFs). See included README for more details. <strong>models.tar.gz</strong><br> Contains the fine-tuned models. Each TF, this includes the fine-tuned single-task profile model for each task/experiment, and the fine-tuned multi-task profile model over all experiments. <strong>motifs.tar.gz</strong><br> Contains the motifs discovered by TF-MoDISco on each profile model, for both the profile and counts heads. This includes the PFM, the CWM, and eCWM. This also includes the motifs that have been merged across the profile/counts heads (i.e. `cpmerged`). <strong>motif_hits.tar.gz</strong><br> For each experiment, motif instances were called using FiNeMo on the best-performing model. Motif instances are either called for the profile head, count head, or merged across both heads. Each subdirectory includes: 1) the collapsed and filtered motif instances; 2) the set of peaks for which they come from; 3) a file matching motif instances to their peaks; 4) the co-occurrence of multiple motifs in peaks; and 5) the distance distribution of motif pairs which significantly co-occur. Unless stated otherwise, collapsing is done over all motif patterns.
DOI: 10.48704/mg5pd2
title: Mg5Pd2
DOI: 10.48704/zr3p
title: Zr3P
DOI: 10.48704/zrmo2
title: ZrMo2
DOI: 10.6084/m9.figshare.17343248
title: Effect of non-steroidal anti-inflammatory drugs on the inflammatory responses of bovine endometrial epithelial cells in vitro - Supplementary Tables

description: Supplementary Tables for publication entitled Effect of non-steroidal anti-inflammatory drugs on the inflammatory responses of bovine endometrial epithelial cells in vitro. <br><br>Supplementary Table 1 - List of genes analyzed by Nanostring (Nanostring technologies Inc) in the cell culture model. <br>Supplementary Table 2 - Normalized counts of genes expressed by bovine endometrial epithelial (bEEL) cells that meet the expression threshold for inclusion in statistical analysis (greater than background gene expression). Untreated bEEL cells (RPMI media + 0.1% DMSO) were used as a control (Control) and treatments included NSAID; flunixin meglumine (Flunixin; 50 μM), meloxicam (5 μM), tolfenamic acid (50 μM), either alone or in combination with an inflammation cocktail (Inflamed; (lipopolysaccharide, 1 μg/mL, bovine interleukin-1β, 10 ng/mL, and bovine tumour necrosis factor α, 50 ng/mL). Expression data was normalized using nSovlver software version 4.0 using the geometric mean of counts for the reference genes <i>ACTB</i>, <i>B2M</i>, <i>GAPDH</i>, <i>RLRP10</i>, <i>RPL13A</i>, <i>RPL15</i>, <i>RPL19</i>, <i>UXT</i>, and <i>YWHAZ</i>. Means are presented with standard error of the means (SEM), significance was determined as P &lt; 0.05, permutation ANOVA with post-hoc Benjamini-Hochberg testing (significance groupings, whereby like letters are not signficant P &gt; 0.05), R version 4.0.2.