cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3622832_d2.v1
title: Additional file 1: Table S1. of FRAMA: from RNA-seq data to annotated mRNA assemblies

description: List of external software. Table S2: NMR transcript data set TCUR, and orthologous transcripts from human, mouse and guinea pig. Multi-species mRNA alignments were constructed independently from those described in the main text, using the sequence database entries as listed. Table S3: Naked mole-rat samples for strand-specific RNA-seq, and produced RNA-seq data. Table S4: Pairwise transcript sequence identities between NMR and related mammals. The analysis is based on 142 multiple sequence alignments of the CDSs of NMR, guinea pig, human and mouse (as listed in Additional file 1: Table S2). Identity values were computed based on gap-masked alignments. Table S5: Statistics of the transcriptome data produced by Trinity (column “transcript assembly”) and subsequently processed using FRAMA (column “transcript catalog”). Table S6: CEGMA results on transcriptome datasets. As defined by CEGMA, ‘complete proteins’ are recovered with &gt;70 % in comparison to CEGMA’s core proteins. ‘Partial proteins’ additionally include proteins, which exceed a certain alignment score threshold. CEGMAs software components were used as suggested: geneid (v1.4), genewise (wise2.2.3-rc7), hmmer (HMMER 3.0), NCBI BLAST+ (2.2.25). Table S7: Source of transcript sequence sets and underlying input data. Table S8: Transcript-genome alignment statistics of curated dataset (TCUR) in hetgla1. The alignments comprise 1473 well-aligned blocks and 81 unaligned or mismatching blocks. Transcripts show 99.9 % average identity within well-aligned blocks. Table S9: Transcript-genome alignment of curated dataset (TCUR) in hetgla2. The alignments comprise 1525 well-aligned blocks and 16 unaligned or mismatching blocks. Transcripts show 99.9 % average identity within well-aligned blocks. Table S10: Correspondence of gene symbols between transcript sets. The evaluation considered gene loci overlapping in the hetgla2 genome sequence, where all transcript-genome alignments of a gene were considered to define the gene locus. Only genes with ascertained function (non-LOC gene symbol) were compared. Table S11: Accession numbers of sequences that are shown in the genome-based transcript map (hetgla2, scaffold JH602043; Fig. 4). Accession numbers for each sequence are listed in the same order as shown in Fig. 4 (from top to bottom). (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3622850_d1.v1
title: Additional file 3: of Deciphering the recent phylogenetic expansion of the originally deeply rooted Mycobacterium tuberculosis lineage 7

description: Is a table listing the SNPs in genes. (XLSX 11Â kb)
DOI: 10.23668/psycharchives.4845
title: Dataset for: Perspective-Specific Moral Foundations Sensitivity and Political Orientation

description: This project aims to systematically integrate two different representations of people’s dispositions to think and feel about justice and morality-related issues thus far reflected in two independent constructs: Justice Sensitivity (JS) differentiates between different perspectives that people take when reflecting upon issues of (in-)justice, whereas Moral Foundations (MF) differentiate between different content domains of morality. Both perspective-specific JS as well as content-specific MF are related to political ideologies and behavioral inclinations, such as voting behavior, but the question of whether a perspective-specific approach, a content-specific approach, or an integrative approach best predicts political attitudes has remained unexplored so far. This is surprising because an integrative approach seems particularly promising and can contribute to current debates in moral psychology, social justice research, and political psychology. Here, we pre-register a cross-sectional online study (N=2200) aimed at testing a measurement model based on items that combine four (JS) perspectives with five (MF) content domains ‒ the Moral Perspectives and Foundations Scale (MPFS). We predict that (1) this measurement model describes the dimensional structure of the 120-item MPFS better than either a four-factorial perspectives model or a five-factorial content domain model. We also predict that (2a) a self-oriented moral foundations sensitivity positively predicts right-wing political orientation, preferences for populist right-wing parties, and anti-immigration attitudes across all five moral foundations, and that (2b) an other-oriented moral foundations sensitivity positively predicts left-wing political orientation and negatively predicts preferences for populist right-wing parties and anti-immigration attitudes across all five moral foundations.
DOI: 10.6084/m9.figshare.c.3622955_d4.v1
title: Additional file 4: Table S3. of Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

description: List of the 2195 cultivars representing the Vassal collection used for computing diversity indices. (XLSX 102 kb)
DOI: 10.6084/m9.figshare.c.3622973_d1.v1
title: Additional file 2: Table S1. of A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures

description: Percentage of reads mapped to the reference genome for each RNA sample. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3622955_d8.v1
title: Additional file 2: Table S2. of Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

description: List of the 62 accessions of Vitis vinifera subsp. silvestris composing the wild panel. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3622973_d3.v1
title: Additional file 3: Table S2. of A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures

description: Total fragments mapped exclusively within each predicted gene per sample and normalized FPKM values. (XLSX 471 kb)
DOI: 10.17863/cam.13951
title: Research data supporting Opinion of Intensive Care Professionals on Glycaemic Control

description: This dataset includes a csv file with raw data and a xls file with the data key, for the Research project "Opinion of Intensive Care Professionals on Glycaemic Control". This was a sub-study of a larger study known as GlyCon. The sub-study was a short online survey to nurses and physicians working in seven intensive care units of the Mid Trent Critical Care Network (UK), between 1st December 2014 and 31st March 2015. The anonymised dataset is being released in full to allow re-use by others. Full details on the methodology and analysis of the results are available from http://eprints.nottingham.ac.uk/42920/
DOI: 10.6084/m9.figshare.c.3622979_d1.v1
title: Additional file 7: Table S6. of The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract

description: Amino acid identity between pseudo-SRRPs from L. reuteri ATCC 53608 and 100-23 and functional SRRP counterparts. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3622973_d4.v1
title: Additional file 10: Table S6. of A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures

description: Genes that were significantly up-regulated from N16961 to N16961R and remained up-regulated in N16961SD. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3622973_d5.v1
title: Additional file 13: Table S9. of A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures

description: Genes that were not significantly differentially regulated from N16961 to N16961R but were significantly down-regulated in N16961SD. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3622955_d11.v1
title: Additional file 7: Table S5. of Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

description: Effect of subgroup, genomic region, MAF, diversity, and SNP annotation features on LD (r 2 V) extent. The three subgroups of the association panel and the wild panel were included. Pairs of SNPs were classified as having: 0, 1 or 2 SNPs with MAF
DOI: 10.17863/cam.26420
title: Data set for 'Synthesis of Y2BaCuO5 nano-whiskers by a solution blow spinning technique and their successful introduction into single-grain, YBCO bulk superconductors'

description: Data supporting the publication 'Synthesis of Y2BaCuO5 nano-whiskers by a solution blow spinning technique and their successful introduction into single-grain, YBCO bulk superconductors'. The data enclosed contains sets of raw data connected with measurements of trapped field in two samples (with and without Y-211 whiskers). Also enclosed is the temperature dependence of magnetisation and field dependence of critical current density in YBCO samples with and without Y-211 nano-whiskers.
DOI: 10.6084/m9.figshare.c.3622985_d1.v1
title: Additional file 1: Table S1. of The Haemonchus contortus kinome - a resource for fundamental molecular investigations and drug discovery

description: The Haemonchus contortus kinome, orthologs in Caenorhabditis elegans and Ovis aries, amino acid sequence identities and similarities, functional annotations, and nucleotide and amino acid sequences. Table S2. Transcription profiles of 432 Haemonchus contortus protein kinase transcripts. Table S3. Chemicals in DrugBank associated with the 13 predicted Haemonchus contortus kinase drug targets. Table S4. Chemicals in KinaseÂ SARfari associated with the 13 predicted Haemonchus contortus kinase drug targets. (XLSX 1004 kb)
DOI: 10.6084/m9.figshare.c.3622979_d2.v1
title: Additional file 3: Table S2. of The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract

description: Predicted surface proteins from L. reuteri ATCC 53608. (XLSX 14Â kb)
DOI: 10.17863/cam.21663
title: Research data supporting "Structural Evolution of a Cyclooctatetraene Adlayer on Cu(111) During Isothermal Desorption"

description: Diffraction data of COT at Cu(111).
DOI: 10.15468/dl.da44z6
title: Occurrence Download

description: A dataset containing 1216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudacris triseriata (Wied-Neuwied, 1838)"
 ]
}

 The dataset includes 1216 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037826-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14509561
title: Data associated with "Nanowood: A Unique Natural Nanomaterial That Can Be Obtained Using Household Chemicals"

description: This is the data and the read-me file (instructions to use the data) associated with the paper titled "Nanowood: A Unique Natural Nanomaterial That Can Be Obtained Using Household Chemicals". This paper was published in the ACS Journal of Chemical Education (DOI: https://doi.org/10.1021/acs.jchemed.4c00166).

The Zenodo upload is available here: Nanowood: A Unique Natural Nanomaterial That Can Be Obtained Using Household Chemicals
description: TRANSLATE is a €3.4 million EU-funded research project that aims to develop a new nanofluidic platform technology to effectively convert waste heat to electricity. This technology has the potential to improve the energy efficiency of many devices and systems, and provide a radically new zero-emission power source. The TRANSLATE project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement number 964251, for the action of 'The Recycling of waste heat through the Application of Nanofluidic ChannelS: Advances in the Conversion of Thermal to Electrical energy'. More information can be be found on the TRANSLATE project website: https://translate-energy.eu/
DOI: 10.5281/zenodo.14509562
title: Data associated with "Nanowood: A Unique Natural Nanomaterial That Can Be Obtained Using Household Chemicals"

description: This is the data and the read-me file (instructions to use the data) associated with the paper titled "Nanowood: A Unique Natural Nanomaterial That Can Be Obtained Using Household Chemicals". This paper was published in the ACS Journal of Chemical Education (DOI: https://doi.org/10.1021/acs.jchemed.4c00166).

The Zenodo upload is available here: Nanowood: A Unique Natural Nanomaterial That Can Be Obtained Using Household Chemicals
description: TRANSLATE is a €3.4 million EU-funded research project that aims to develop a new nanofluidic platform technology to effectively convert waste heat to electricity. This technology has the potential to improve the energy efficiency of many devices and systems, and provide a radically new zero-emission power source. The TRANSLATE project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement number 964251, for the action of 'The Recycling of waste heat through the Application of Nanofluidic ChannelS: Advances in the Conversion of Thermal to Electrical energy'. More information can be be found on the TRANSLATE project website: https://translate-energy.eu/
DOI: 10.6084/m9.figshare.c.3623075_d2.v1
title: Additional file 2: Table S1. of Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae

description: Annotation of Eucalyptus conserved miRNAs by similarity search against miRBase. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3623075_d3.v1
title: Additional file 4: Table S2. of Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae

description: Eucalyptus miRNA loci predicted by miRDeep2. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3623066_d3.v1
title: Additional file 3: of A practical approach to detect ancestral haplotypes in livestock populations

description: Five most common ancestral haplotypes per breed in the Spanish breeds dataset. Information presented for each haplotype (Hap) pertain to chromosome (Chr), genomic coordinates of the haplotype (starting SNP and ending SNP base pair positions), frequency (as provided by AlphaPhase) and relative frequency to other haplotypes (frequency of the haplotype divided by the sum of the frequencies of all haplotypes detected in the cluster for the total population). Coordinates are given according to the Genome assembly UMD3.1. (XLSX 13Â kb)
DOI: 10.17863/cam.46534
title: Supplementary data: GDF15 is elevated in conditions of glucocorticoid deficiency and is modulated by glucocorticoid replacement

description: The file consists of supplementary tables containing the individual participant GDF15 measurements for the four study cohorts reported in the associated manuscript.
DOI: 10.6084/m9.figshare.c.3623075_d6.v1
title: Additional file 7: Table S4. of Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae

description: Targets from degradome sequencing for BRASUZ1 21 bp RNAs - leaves. (XLS 30 kb)
DOI: 10.17863/cam.65301
title: Online Appendix to ‘Two Lost Items of Humeana’, The Library

description: The following is an online Appendix to my article: ‘Two Lost Items of Humeana’, published in The Library. The Appendix transcribes the image of National Library of Scotland, F. R. 118--the ‘Register of the Proceedings of the Curators and Keeper’ of the Library of the Faculty of Advocates-- reproduced by Dickson in 1932 and Hillyard in 1989.
DOI: 10.17863/cam.89519
title: Research Data supporting "Learning at your brain's rhythm: individualized entrainment boosts learning for perceptual decisions"

description: Data included covers the analyses presented in the main manuscript as individual csv files. Please see the readme document for further details.
DOI: 10.6084/m9.figshare.c.3623234_d2.v1
title: Additional file 3: of Italian translation and cultural adaptation of the communication assessment tool in an outpatient surgical clinic

description: Dataset. (XLSX 15 kb)
DOI: 10.23668/psycharchives.4857
title: COVID-19 Snapshot Monitoring (COSMO Germany) - Wave 43

description: In a crisis such as the current outbreak of the newly emerged coronavirus, it is of utmost importance to monitor public perceptions of risk, protective and preparedness behaviours, public trust, as well as knowledge and misinformation to enable government spokespeople, the media, and health organizations to implement adequate responses (WHO Europe, 2017; World Health Organization, 2017). The purpose of this serial cross-sectional study COSMO is to allow rapid and adaptive monitoring of these variables over time and to assess the relations between risk perceptions, knowledge and misinformation to preparedness and protective behaviour regarding COVID-19 in Germany.
DOI: 10.6084/m9.figshare.c.3623327_d5.v1
title: MOESM6 of Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process

description: Additional file 6. Two-species model in SBML format.
DOI: 10.15468/dl.9vn94t
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Corethrodendron scoparium (Fisch. & C.A.Mey.) Fisch. & Basiner"
 ]
}

 The dataset includes 120 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037827-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3623354_d1.v1
title: Additional file 7: Table S4. of The segregation of different submicroscopic imbalances underlying the clinical variability associated with a familial karyotypically balanced translocation

description: Breakpoint junctions involved in the t(2;5;22) identified by mate-pair sequencing data. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3623327_d6.v1
title: MOESM3 of Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process

description: Additional file 3. Model of D. vulgaris in SBML format.
DOI: 10.6084/m9.figshare.c.3623357_d1.v1
title: Additional file 7: of Small RNA sequencing and degradome analysis of developing fibers of short fiber mutants Ligon-lintles-1 (Li
                     
                1
              ) and −2 (Li
                     
                2
              ) revealed a role for miRNAs and their targets in cotton fiber elongation

description: Primer’s sequences of miRNAs, their target genes and 5’ RACE gene specific primers. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3623354_d3.v1
title: Additional file 1: Table S1. of The segregation of different submicroscopic imbalances underlying the clinical variability associated with a familial karyotypically balanced translocation

description: BAC clones used as probes for chromosome 2 breakpoint mapping in the proband (III-4). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3623357_d2.v1
title: Additional file 3: of Small RNA sequencing and degradome analysis of developing fibers of short fiber mutants Ligon-lintles-1 (Li
                     
                1
              ) and â  2 (Li
                     
                2
              ) revealed a role for miRNAs and their targets in cotton fiber elongation

description: Target identification with degradome conserved and novel miRNAs. RNAseq expression of target genes in elongating fiber cells at 8 DPA of Li 1 , Li 2 and wild type. (XLSX 109Â kb)
DOI: 10.6084/m9.figshare.c.3623327_d7.v1
title: MOESM7 of Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process

description: Additional file 7. Three-species model in SBML format.
DOI: 10.6084/m9.figshare.c.3623369_d1.v1
title: Additional file 1: Tables S1-S13. of 
                     Sarcoptes scabiei: genomics to proteomics to biology

description: Complete results of the various database searches described in the text. (XLSX 101 kb)
DOI: 10.6084/m9.figshare.c.3623354_d5.v1
title: Additional file 2: Table S2. of The segregation of different submicroscopic imbalances underlying the clinical variability associated with a familial karyotypically balanced translocation

description: BAC and PAC clones used as probes for chromosome 22 breakpoint mapping in the proband (III-4). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3623372_d1.v1
title: Additional file 2: of High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis

description: Supplementary Tables S1 to S4. (ZIP 31 kb)
DOI: 10.6084/m9.figshare.c.3623369_d2.v1
title: Additional file 2: of 
                     Sarcoptes scabiei: genomics to proteomics to biology

description: BLAST2GO results generated on 25 Feb 2016 as described in the Methods. Data are sorted alphabetically by GO Biological Process. (XLSX 192Â kb)
DOI: 10.15468/dl.kfbvt7
title: Occurrence Download

description: A dataset containing 275 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Geometry POLYGON((-74.26326 11.00331,-74.14824 11.16435,-74.32844 11.33306,-74.51249 11.22186,-74.26326 11.00331))",
 "StateProvince is one of (magdalena)",
 "TaxonKey is one of (Ochrophyta)"
 ]
 }
 ]
}

 The dataset includes 275 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037828-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3623372_d2.v1
title: Additional file 1: of High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis

description: Supplementary Figures S1 to S26. (ZIP 7 mb)
DOI: 10.6084/m9.figshare.c.3623357_d5.v1
title: Additional file 2: of Small RNA sequencing and degradome analysis of developing fibers of short fiber mutants Ligon-lintles-1 (Li
                     
                1
              ) and â  2 (Li
                     
                2
              ) revealed a role for miRNAs and their targets in cotton fiber elongation

description: Novel miRNAs loci in TM-1 genome and reads count in each small RNA libraries. (TXT 142Â kb)