cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.26k11/4
title: Data files (Matlab worksapces) packed in a ZIP archive - scenarios with pathogens, mutation rate 5*10^-3

description: Scenarios in which pathogens interact with hosts Data set is packed in a ZIP archive. Names of catalogue in the archive indicate scenario parameters: host population size N and simulated mechanism of partner choice (RM - random mating, h0 - soft assortative mating, h1 - hard assortative mating; see Materials and Methods for details). Each scenario catalogue contains 100 files (Matlab workspaces) with saved variables of each of 100 independent replications. Saved variables:HED_scen – partner choice scenario (random mating HED_scen=NaN, soft assortative mating h0 HED_scen=0, hard assortative mating h1 HED_scen=1)        N – host population size               off_val_occ – offspring reproductive value at birth in subsequent mating attemptsh_mut_rat – host mutation ratebits_num – number of bits in MHC moleculematch – number of matching bits necessary for antigen presentation num_pat_spec – number of pathogen speciesp_mut_rat – pathogen mutation ratepat_gen – number of pathogen generations per one host generationpept_num – number of antigens produced by a pathogenhost_n_all – allelic richness across generationshost_time – host generation numbermat_occ_distr – number of mating pairs in subsequent mating attempts (first row indicate first mating attempt) saved every host generationCompl_all_hist – frequency distribution of MHC alleles saved in last 1400 host generations (host generations 1600-3000). Matrix of allele frequency distribution is saved as Matlab sparse matrix, (type full(Compl_all_hist) to transform Compl_all_hist into trajectories of allele frequency)in_pres_al – decimal labels of MHC alleles in allele frequency history matrix Compl_all_histmean_pres_pat – mean proportion of presented pathogensSD_pres_pat – standard deviation for the proportion of presented pathogens
DOI: 10.5061/dryad.45q73/1
title: Field observation data

description: Field observations of Pararge aegeria at five locations in Sweden for years 2004-2013
DOI: 10.5061/dryad.45q73/2
title: Critical daylength experiment

description: Critical daylength experiment of Pararge aegeria from five Swedish populations
DOI: 10.5061/dryad.45q73/3
title: Life history traits experiment

description: Life history traits experiment
DOI: 10.5061/dryad.45q73/4
title: Life history traits experiment: Protandry

description: Life history traits experiment: Protandry
DOI: 10.5061/dryad.544b1/1
title: Predation data

description: Data indicate the number of predation attempts by birds on four different artificial butterfly model types: a local type, color-switched type, achromatic type, and non-local type.
DOI: 10.5061/dryad.544b1/2
title: Mate preference data

description: Data indicate the number of approaches (sheet 1) and courtship attempts (sheet 2) by male Heliconius erato butterflies directed toward artificial butterfly models of four types: a local type, color-switched type, achromatic type, and non-local type.
DOI: 10.5061/dryad.cc32c/1
title: mtDNA and microsatellite data

description: microsatellite and mitochondrial data of samples used in publication
DOI: 10.5061/dryad.hf93m/15
title: HCC5 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/16
title: ICC1 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/17
title: ICC2 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/18
title: ICC3 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/19
title: ICC4 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/20
title: ICC5 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/21
title: IPMN1 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/22
title: IPMN2 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.r867b/1
title: 24_SSR_140826_Arabidopsis thaliana

description: Fragment lengths of 24 SSR markers amplified in in 14 populations of Arabidopsis thaliana from the Swiss Alps. Populations were collected at altitudes ranging from 850 to 2700 m a.s.l..
DOI: 10.5061/dryad.vn6dv/10
title: Gilston_etal_2014_Table 3

description: Raw data from data summarized in Table 3
DOI: 10.5061/dryad.vn6dv/6
title: Gilston_etal_2014_Figure S4

description: Raw data from Hill plot Figure S4
DOI: 10.5061/dryad.vn6dv/7
title: Gilston_etal_2014_Figure S5

description: Raw data used for mutant gel-shift analysis in Figure S5
DOI: 10.5061/dryad.vn6dv/8
title: Gilston_etal_2014_Figure S6

description: Raw data from major and minor groove width Curves analysis from Figure S6
DOI: 10.5061/dryad.vn6dv/9
title: Gilston_etal_2014_Figure S7

description: Raw data from gel-shift of pliG data in Figure S7
DOI: 10.7925/drs1.ucdlib_31240
title: 6-12 Clarendon Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Stone structure, constructed 1793.
description: Dublin City Council, Record of Protected Structures (2010), no. 1899
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31242
title: 14 Chatham Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31244
title: Clarendon Market 3

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 2 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31246
title: Clarendon Market 4

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 2 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31248
title: 2 Church Lane, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 1541
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31250
title: College Green, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Stone structure, 3 levels above ground, constructed 1728.
description: Dublin City Council, Record of Protected Structures (2010), no. 1986
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31252
title: 30-33 College Green, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: RC Frame structure, 5 levels above ground, constructed 1883.
description: Dublin City Council, Record of Protected Structures (2010), no. 1995
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31254
title: 3-4 Church Lane, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1908.
description: Dublin City Council, Record of Protected Structures (2010), no. 1542
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31257
title: 32 Clarendon Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.0pg63/1
title: R Code

description: This R file contains all of the code necessary to reproduce the analyses presented in the paper (except the phylogenetics) and figs 1, 3, and 4.
DOI: 10.5061/dryad.0pg63/2
title: SWD_Wolbachia

description: This file contains all data needed to reproduce our results.
DOI: 10.5061/dryad.0pg63/3
title: SWD_phylo2

description: This nexus file contains the alignment nDNA and mtDNA used in the paper, plus the MrBays block required to conduct the partitioned Bayesian analysis described in the paper. MrBayes v3.2.2 using mpi for faster processing. MrBayes was executed as follows: mpirun -n 5 mb SWD_phylo2.nex &gt; out.txt
DOI: 10.5061/dryad.0pg63/4
title: Dros_COIa

description: Nexus file with aligned Drosophila COI data. To generate the neighbor joining tree I opened PAUP* , loaded the data , entered the command "nj" and then saved the tree output.
DOI: 10.5061/dryad.0pg63/5
title: SWD_COI_Accession_numbers

description: GenBank accession numbers for DNA sequences generated for this paper
DOI: 10.5061/dryad.17jr3/1
title: VWC

description: Data were collected in the field experiment using a hand-held soil moisture meter (Aquaterr M 300, Costa Mesa, CA) with measurements of volumetric water content taken at 20 cm and 40 cm soil depths.  Plot=unique plot number, row=position of plot in the experimental matrix, col=column position of plot in the experimental matrix, EF=endophyte presence(1) or absence(0),	Water=reduced(L), ambient(M), or augmented(H), Date=date of observation, VWC20=mean volumetric water content per plot at 20 cm soil depth, VWC40=mean volumetric water content per plot at 40 cm soil depth.
DOI: 10.5061/dryad.17jr3/2
title: Plant Community Diversity and Abundance data
DOI: 10.5061/dryad.17jr3/3
title: perMANOVA2012 - plant species data matrix for 2012
DOI: 10.5061/dryad.17jr3/4
title: perMANOVA2013 - Plant species data matrix for 2013
DOI: 10.5061/dryad.1gn3b/1
title: Ground_Ants_Cerrado_Fire_2014

description: Matrix of absolute frequency of each ground-dwelling ant species collected in 20 experimental fire plots.
DOI: 10.5061/dryad.1gn3b/2
title: Tree_Ants_Cerrado_Fire_2014

description: Matrix of absolute frequency of each tree-dwelling ant species collected in 20 experimental fire plots.
DOI: 10.5061/dryad.1jc02/1
title: Origin and genome evolution of polyploid green toads in Central Asia_data

description: Matrix of Microsatellites data
DOI: 10.5061/dryad.36746/1
title: Common garden data

description: The file contains all data used in the statistical analyses described in the materials and methods section of the article. Abbreviated headlines are as follows: "Pop"=Population; "Code"= number of family associated with the population; "Fam"=family; "Number"=number of each plant within a family; "PB"=plunge bed; "Treatment"=water treatment ("D"=drought stress; "W"= ambient water treatment); "Beetles"=number of beetles; "Aphids_(cm)"=cm covered by aphids; "Aph"=Aphids_(cm)+0.1; "Stem"=number of holes produced by C.quadridens larvae in the plant stem; "Weight"=above-ground biomass (g); "Infl."=number of inflorescences; "Damage"=percent damage by herbivores; "Height_Aft"=plant height.
DOI: 10.5061/dryad.3d271/1
title: datafiles_Colorado_&_Rodewald_2014

description: Presence-absence matrix for mixed-species bird flocks from 13 regions in Colombia, Venezuela, Ecuador and Peru. Data is presented with scientific names of birds.
DOI: 10.5061/dryad.73h9k/1
title: Survey results and feeding experiment data

description: All fish and benthos (algae and invertebrate) survey data and results from feeding assays. All data collected in the field.
DOI: 10.5061/dryad.hf93m/23
title: IPMN3 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/24
title: IPMN4 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/25
title: IPMN5 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/26
title: PDAC1 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/27
title: PDAC2 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/28
title: PDAC3 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/29
title: PDAC4 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/30
title: PDAC5 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/31
title: SPT1_FFPE Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/32
title: SPT1_FROZEN Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.k47p7/1
title: Glutamate docked in the homology model of GluClAc2 (Aplysia californica)

description: Coordinates of the homology model of GluClAc2, the glutamate-gated chloride channel receptor of Aplysia californica with docked glutamate.
DOI: 10.5061/dryad.r867b/2
title: Phenotypic data_140826_Arabidopsis thaliana

description: Measurements of ecologically relevant traits in 14 Arabidopsis thaliana populations from the Swiss Alps collected at 850 to 2700 m a.s.l.. Plants were grown in a greenhouses with and without vernalization.
DOI: 10.7925/drs1.ucdlib_31261
title: 37 College Green, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Stone structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31263
title: 34-36 Clarendon Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31265
title: 3-5 College Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Stone structure, 3 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 2009
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31267
title: 6 College Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 2010
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31269
title: 37-38 Clarendon Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.