cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25330288
title: Flow and deformation in Earth’s deepest mantle: insights from geodynamic modeling and comparisons with seismic observations

description: This study uses simulations to explore D” flow, rock deformation, and seismic anisotropy. Results show strong deformation in D”, consistent with observed seismic anisotropy. Deformation strength increases with depth, particularly beneath the Central Pacific and Africa. Our findings align with anisotropy observations, advancing understanding of the D” layer dynamics.The CitcomS.tar.gz is the source code, the input.tar contains the input files for 7 cases, the initial_condition contains the initial temperature and composition conditions for each case, and the Lietal-2024-JGR-revision2 is the data for Figure 1-13.After download the Lietal-2024-JGR-revision2, unzip it, then you will find a series of subfolders named as Figure<i>. </i>Go into each folder, and run the Figure*.sh bash script, you will get a pdf file for the figure used in the paper.
DOI: 10.6084/m9.figshare.25330288.v2
title: Flow and deformation in Earth’s D” layer

description: This study uses simulations to explore D” flow, rock deformation, and seismic anisotropy. Results show strong deformation in D”, consistent with observed seismic anisotropy. Deformation strength increases with depth, particularly beneath the Central Pacific and Africa. Our findings align with anisotropy observations, advancing understanding of the D” layer dynamics.After download the data, unzip it, then you will find a series of subfolders named as Figure<i>. </i>Go into each folder, and run the Figure*.sh bash script, you will get a pdf file for the figure used in the paper.The CitcomS.tar.gz is the source code, and the Lietal-2024-JGR is the data for Figure 1-13.
DOI: 10.3886/icpsr38597.v2
title: National Neighborhood Data Archive (NaNDA): Polluting Sites by Census Tract and ZIP Code Tabulation Area, United States, 1987-2021
title: Version 2

description: This dataset contains yearly counts from 1987 to 2021 of polluting sites in each United States census tract and within a 0.5-mile buffer to capture spillover effects and in each United States ZIP code tabulation area. Polluting sites are taken from the US Environmental Protection Agency's (EPA) Toxics Release Inventory. These facilities are typically larger and involved in manufacturing, metal mining, electric power generation, chemical manufacturing, and hazardous waste treatment.
description: The purpose of this study is to investigate the impact of disamenities, in this case polluting sites, on neighborhood walkability.
description: The Principal Investigators obtained the latitudes and longitudes of all polluting sites appearing in file type 1A (Facility, Chemical, Releases, and Other Waste Management Summary Information) of the EPA's Toxics Release Inventory (TRI) in reporting years 1987 through 2021. Agencies with ten or more employees that manufacture, process, or use chemicals from a list maintained by the EPA are required to self-report data for the TRI annually (U.S. Environmental Protection Agency, 2021).


ArcGIS Pro was used to create 0.5-mile buffers around all U.S. census tracts. The Principal Investigators then
performed a spatial join to assign each polluting site's latitude and longitude to the census tracts (plus buffers) within which it falls. (Polluting locations for which census tracts could not be determined are excluded from this dataset.) A 0.5-mile buffer was used to approximate the effect of sites not only within a neighborhood itself, but in nearby or adjoining neighborhoods. The last step was then to count the total number of polluting sites within each census tract plus buffer in each year.
description: Datasets: 
DS0: Study-Level Files
DS1: Polluting Sites by Census Tract Data (2010 Census)
DS2: Polluting Sites by ZIP Code Tabulation Area Data (2010 Census)
DS3: Polluting Sites by Census Tract Data (2020 Census)
DS4: Polluting Sites by ZIP Code Tabulation Area Data (2020 Census)
description: Census tracts and ZIP code tabulation areas in the United States, excluding U.S. island territories. Smallest Geographic Unit: census tract and ZIP code tabulation area
description: Data and documentation for data file 1 (Polluting Sites by Census Tract Data (2010 Census)) were originally deposited in openICPSR project 159961.


Data and documentation for data file 2 (Polluting Sites by ZIP Code Tabulation Area Data (2010 Census)) were originally deposited in openICPSR project 159981.
A ZIP code to ZCTA crosswalk must be used to combine this dataset with ZIP code geocoded data. A crosswalk and sample code for merging the crosswalk with National Neighborhood Data Archive (NaNDA) datasets are available in the ICPSR Linkage Library.For additional information please see the National Neighborhood Data Archive (NaNDA).
DOI: 10.15468/dl.7e7hnx
title: Occurrence Download

description: A dataset containing 1726 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Klyxum Alderslade, 2000"
 ]
}

 The dataset includes 1726 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011304-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2t56z
title: Occurrence Download

description: A dataset containing 77990 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eucalyptus camaldulensis Denham"
 ]
}

 The dataset includes 77990 records from 182 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011303-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8mnsr
title: Occurrence Download

description: A dataset containing 775562 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Columbidae"
 ]
}

 The dataset includes 775562 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011297-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pandux
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Myoxanthus reymondii (H.Karst.) Luer"
 ]
}

 The dataset includes 22 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011306-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.798rh3
title: Occurrence Download

description: A dataset containing 1472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cirrhilabrus exquisitus Smith, 1957"
 ]
}

 The dataset includes 1472 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011307-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vdmqhe
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((128.82701 30.76267,129.66889 29.603,132.01053 29.72566,131.53662 31.59897,128.82701 30.76267))",
 "OccurrenceStatus is Present",
 "TaxonKey is Cirrhilabrus lanceolatus Randall & Masuda, 1991"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011308-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqgr45
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphilotes stanfordorum"
 ]
}

 The dataset includes 75 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011309-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgmq95
title: Occurrence Download

description: A dataset containing 293414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-10-18",
 "EventDate is less than or equal to 2024-11-17",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 293414 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011230-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.zxjxt4mc
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5968302 records)
DOI: 10.15468/dl.w25y7t
title: Occurrence Download

description: A dataset containing 950435 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Dominican Republic"
 ]
}

 The dataset includes 950435 records from 917 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011302-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5fn11491
title: MassIVE MSV000097652 - Casein Kinase 2 as a novel therapeutic target for LMO1-dependent high-risk Neuroblastoma
title: Neuroblastoma (NB) is the most common extracranial solid tumor in children, accounting for ~15% of pediatric cancer-related deaths. Survival rates for high-risk NB remain below 50%, even with intensive therapies. Our previous studies identified LIM-domain-only 1 (LMO1) as a critical NB predisposition gene, whose overexpression is significantly associated with advanced NB stage and metastasis. Currently, no inhibitors are available to effectively target LMO1, so we sought to find druggable LMO1-interacting partners that mediate LMO1-induced aggression in NB. We identified CSNK2B, a regulatory subunit of CK2 kinase, from a mass-spectrometry analysis of immunoprecipitated LMO1-interacting proteins. We found that LMO1 promotes the phosphorylation of CSNK2B at serine 209 (Ser209), and that phospho(Ser209)-CSNK2B is associated with increased CK2 activity and advanced stages of NB. Moreover, pharmacological inhibition of CK2 with CX-4945 induced apoptosis in human NB cell lines with high LMO1 expression and specifically reduced the in-vivo tumor growth of zebrafish MYCN-driven NBs that express LMO1. Our genetic gain- and loss-of-function assays and ChIP-qPCR analysis identified BRD4 as a phosphorylation target of CK2 that accumulates and binds to the MYCN promoter when LMO1 is overexpressed, providing a link between the LMO1-CSNK2B interaction and increased expression of MYCN. These findings position CSNK2B as a critical partner of LMO1 during NB tumorigenesis and suggest CK2 as a promising therapeutic target for LMO1-associated high-risk NB.
DOI: 10.15468/dl.gdgo6u
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coffea arabica var. bullata Cramer"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005562-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ejyegh
title: Occurrence Download

description: A dataset containing 115133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum lycopersicum L."
 ]
}

 The dataset includes 115133 records from 763 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156492-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6tlxp
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "or" : [
 "ScientificName is Alnus × hosoii Mizush.",
 "ScientificName is Alnus × hosoii",
 "ScientificName is Alnus x hosoii",
 "ScientificName is Alnus x hosoii Mizush.",
 "ScientificName is Alnus xhosoii Mizush.",
 "ScientificName is Alnus hosoii Mizush."
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005562-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggznhn
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boswellia carteri Birdw."
 ]
}

 The dataset includes 42 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156471-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bdniem
title: Occurrence Download

description: A dataset containing 2661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bombycilla cedrorum Vieillot, 1808",
 "Country is Mexico"
 ]
}

 The dataset includes 2661 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005562-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b45kuv
title: Occurrence Download

description: A dataset containing 161180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is BRA.25.426_2"
 ]
}

 The dataset includes 161180 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004588-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zhofz
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thamnophis pulchrilatus (Cope, 1885)"
 ]
}

 The dataset includes 95 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005562-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pyhbjf
title: Occurrence Download

description: A dataset containing 1012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Graphocephala atropunctata (Signoret, 1854))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 20000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1012 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004586-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjvbmw
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Viet Nam",
 "Country is Indonesia",
 "Country is Thailand",
 "Country is Singapore",
 "Country is Malaysia",
 "Country is Philippines",
 "Country is Myanmar",
 "Country is Cambodia",
 "Country is Lao People’s Democratic Republic",
 "Country is Brunei Darussalam",
 "Country is Timor-Leste",
 "Country is Papua New Guinea"
 ]
 },
 "TaxonKey is Cystopteridaceae"
 ]
}

 The dataset includes 129 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005562-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8tuxx
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agaocephala margaridae Alvarenga, 1958"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156491-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnkum9
title: Occurrence Download

description: A dataset containing 1379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aulacorhynchus prasinus (Gould, 1833)",
 "Country is Colombia"
 ]
}

 The dataset includes 1379 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005563-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7jx3x
title: Occurrence Download

description: A dataset containing 46801 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "TaxonKey is Asclepias syriaca L.",
 "Year 2016-2023"
 ]
}

 The dataset includes 46801 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028033-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vrbm5
title: Occurrence Download

description: A dataset containing 95589956 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Occurrence evidence)",
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 95589956 records from 1029 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055697-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26564358.v1
title: Additional file 4 of Whole-exome sequencing identified recurrent and novel variants in benzene-induced leukemia

description: Additional file 4. Whole-exome sequencing identified genetic variants with minor allele frequency &lt; 1% in the gnomAD database for East Asian and shared by all cases.
DOI: 10.6084/m9.figshare.26564355
title: Additional file 3 of Whole-exome sequencing identified recurrent and novel variants in benzene-induced leukemia

description: Additional file 3. Whole-exome sequencing identified genetic variants with minor allele frequency &lt; 1% in the gnomAD database for East Asian.
DOI: 10.6084/m9.figshare.26564355.v1
title: Additional file 3 of Whole-exome sequencing identified recurrent and novel variants in benzene-induced leukemia

description: Additional file 3. Whole-exome sequencing identified genetic variants with minor allele frequency &lt; 1% in the gnomAD database for East Asian.
DOI: 10.7488/ds/3830
title: SUPERSEDED - Production system drivers of antibiotic resistance at the human-animal interface in Uganda
title: SUPERSEDED - AMR dynamics in gut microbiome of farmers and animals

description: ## This item has been replaced by the one which can be found at [https://doi.org/10.7488/ds/7792] ##' This dataset and code are part of supplementary data for a manuscript Muwonge, A., Kakooza, T., Johnson, P.C.D., Kisuule, L., Kimaanga, M., Kankya, C., de Clare Bronsvoort, B.M., Lembo, T., "Production system drivers of antibiotic resistance at the human-animal interface in Uganda", The Lancet Planetary Health (in submission). They explore the role of livestock production systems in the epidemiology of antibacterial resistance (ABR) in sympatric human and livestock populations, which is poorly understood. Here, they examine ABR at the farmer-pig interface of Uganda, where the pig sector is rapidly growing, to quantify rates of resistance, understand associated human- and livestock-related factors, and investigate cross-species transmission. The motivation of this is to improve our understanding of the role of livestock production systems in the emergence and transmission of AMR, this paper uses phenotypic resistance profile from sentinel bacteria E.coli and Klebsiella, recovered from a faecal sample collected from farmers and their pigs across a one-year longitudinal study. This is mapped to AMR gene carriage of four selected genes measured using QPCR. Using the Metadata, they examine drivers of resistance in this setting, and also use the prevalence and sharing of MDR profiles to infer transmission.
description: There are three main datasets: Metadata, Phenotype and Qpcr datases. Three other subsets: A) House_Hold_PAIRS, B) HOUSE_HOLD_PAIRS_SHARED_MDR,C) E_COLI_MDR_SHARED METADATA.csv has 476 rows and 14 columns. This data set is named FLF_PHENOTYPE DATA. It contains 8 columns and 2830 rows This data is output from analysis of bacteria culture from farmers and thier pigs in the one year longitudinal study. We collected these sample 6 times growing three bacteria E.coli, Klebsiella and Salmonella. Pig and Human ID, SAMPLE ID E.G KLAMAK011P (The first three letters= District; second three letter= Sub county; the two number digit= household; next number= visit number; last number= the host, Pig or Human) Controls: E.g. KLANANCTR021. CRT= control; 02= Negative control; 01= Positive control; last number= visit number. For analysis, use column 3: SAMPLE_ID2. We often generate variables out of the ID as data integrity validation process, usually in a data set as ID3. SETTING= District (Urban=Kampala (intensive & semi intensive pig), Rural= Mubende (free range or semi free range)); Subcounty= administrative division in the district; SAMPLING= the visit time (1-6); Species= the Host (Human or Pig); Isolate= tracking number for the laboratory; Bacteria= the Bacteria isolated. Antibiotics, these will have three states (R,I,S)= resistant, intermediate and susceptible. Note that, we did not have results for Imipenem for the first sampling point