cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11471595
title: MOESM2 of Population genetic structure and habitat connectivity for jaguar (Panthera onca) conservation in Central Belize

description: Additional file 2: Table S1. Excel template with PCR profiles for species identification, microsatellite multiplexes and sex identification.
DOI: 10.6084/m9.figshare.11471592
title: MOESM10 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 10: Table S6. Information of IS, ICE, virulence related genes and pathogenicity island proteins around some of the inversions breakpoints.
DOI: 10.6084/m9.figshare.11471592.v1
title: MOESM10 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 10: Table S6. Information of IS, ICE, virulence related genes and pathogenicity island proteins around some of the inversions breakpoints.
DOI: 10.6084/m9.figshare.11471595.v1
title: MOESM2 of Population genetic structure and habitat connectivity for jaguar (Panthera onca) conservation in Central Belize

description: Additional file 2: Table S1. Excel template with PCR profiles for species identification, microsatellite multiplexes and sex identification.
DOI: 10.6084/m9.figshare.11471565
title: MOESM4 of Investigating host-bacterial interactions among enteric pathogens

description: Additional file 4. Gene Ontology analysis of the human and bacterial proteins associated to the host-pathogen interaction (HPI) network.
DOI: 10.6084/m9.figshare.11471565.v1
title: MOESM4 of Investigating host-bacterial interactions among enteric pathogens

description: Additional file 4. Gene Ontology analysis of the human and bacterial proteins associated to the host-pathogen interaction (HPI) network.
DOI: 10.6084/m9.figshare.11471547
title: MOESM2 of Investigating host-bacterial interactions among enteric pathogens

description: Additional file 2. Network statistics for each of the human and bacterial proteins which were associated to the host-pathogen interaction (HPI) network.
DOI: 10.6084/m9.figshare.11471544
title: MOESM1 of Investigating host-bacterial interactions among enteric pathogens

description: Additional file 1. List of predicted Host Pathogen Interactions (HPIs) for the studied host-pathogen models.
DOI: 10.6084/m9.figshare.11471547.v1
title: MOESM2 of Investigating host-bacterial interactions among enteric pathogens

description: Additional file 2. Network statistics for each of the human and bacterial proteins which were associated to the host-pathogen interaction (HPI) network.
DOI: 10.6084/m9.figshare.11471544.v1
title: MOESM1 of Investigating host-bacterial interactions among enteric pathogens

description: Additional file 1. List of predicted Host Pathogen Interactions (HPIs) for the studied host-pathogen models.
DOI: 10.6084/m9.figshare.11471517
title: MOESM4 of A generative model for constructing nucleic acid sequences binding to a protein

description: Additional file 4 Known aptamers binding to three proteins. An aptamer binding to NFATC1, two aptamers binding to NFKB1, and two aptamers binding to MBNL1.
DOI: 10.6084/m9.figshare.11471520
title: MOESM5 of A generative model for constructing nucleic acid sequences binding to a protein

description: Additional file 5 FATC1-binding motifs and NFKB1-binding motifs found in the DNA sequences generated by other methods. NFATC1-binding motifs and NFKB1-binding motifs found in the DNA sequences generated by AptaSim and by a set of programs in AptaSuite.
DOI: 10.6084/m9.figshare.11471520.v1
title: MOESM5 of A generative model for constructing nucleic acid sequences binding to a protein

description: Additional file 5 FATC1-binding motifs and NFKB1-binding motifs found in the DNA sequences generated by other methods. NFATC1-binding motifs and NFKB1-binding motifs found in the DNA sequences generated by AptaSim and by a set of programs in AptaSuite.
DOI: 10.6084/m9.figshare.11471514
title: MOESM3 of A generative model for constructing nucleic acid sequences binding to a protein

description: Additional file 3 Nucleic acid sequences generated by our model for three proteins. Nucleic acid sequences and their binding specificity to target proteins (NFATC1, NFKB1 and MBNL1), constructed by our model.
DOI: 10.6084/m9.figshare.11471517.v1
title: MOESM4 of A generative model for constructing nucleic acid sequences binding to a protein

description: Additional file 4 Known aptamers binding to three proteins. An aptamer binding to NFATC1, two aptamers binding to NFKB1, and two aptamers binding to MBNL1.
DOI: 10.6084/m9.figshare.11471511
title: MOESM2 of A generative model for constructing nucleic acid sequences binding to a protein

description: Additional file 2 Nucleic acid sequences of three types. Nucleic acid sequences generated by our model, AptaSim, and random generator for four proteins (DRGX, GCM1, OLIG1 and RXRB).
DOI: 10.6084/m9.figshare.11471511.v1
title: MOESM2 of A generative model for constructing nucleic acid sequences binding to a protein

description: Additional file 2 Nucleic acid sequences of three types. Nucleic acid sequences generated by our model, AptaSim, and random generator for four proteins (DRGX, GCM1, OLIG1 and RXRB).
DOI: 10.6084/m9.figshare.11471514.v1
title: MOESM3 of A generative model for constructing nucleic acid sequences binding to a protein

description: Additional file 3 Nucleic acid sequences generated by our model for three proteins. Nucleic acid sequences and their binding specificity to target proteins (NFATC1, NFKB1 and MBNL1), constructed by our model.
DOI: 10.6084/m9.figshare.11471487
title: MOESM1 of A generative model for constructing nucleic acid sequences binding to a protein

description: Additional file 1 HT-SELEX data of DeepBind. The data used for training our generator model and the HT-SELEX data used for comparing with other methods. The size of the compressed file is about 1.8GB.
DOI: 10.6084/m9.figshare.11471487.v1
title: MOESM1 of A generative model for constructing nucleic acid sequences binding to a protein

description: Additional file 1 HT-SELEX data of DeepBind. The data used for training our generator model and the HT-SELEX data used for comparing with other methods. The size of the compressed file is about 1.8GB.
DOI: 10.6084/m9.figshare.11471346
title: MOESM1 of Bats and ticks: host selection and seasonality of bat-specialist ticks in eastern Europe

description: Additional file 1: Table S1. List of bats captured in Romania and Bulgaria, with details on capture date, host age and sex, together with species and development stage of ticks hosted.
DOI: 10.6084/m9.figshare.11471346.v1
title: MOESM1 of Bats and ticks: host selection and seasonality of bat-specialist ticks in eastern Europe

description: Additional file 1: Table S1. List of bats captured in Romania and Bulgaria, with details on capture date, host age and sex, together with species and development stage of ticks hosted.
DOI: 10.6084/m9.figshare.11471337
title: MOESM1 of Psychological intimate partner violence against women in the European Union: a cross-national invariance study

description: Additional file 1. Psychological IPVAW comparisons between countries.
DOI: 10.6084/m9.figshare.11471337.v1
title: MOESM1 of Psychological intimate partner violence against women in the European Union: a cross-national invariance study

description: Additional file 1. Psychological IPVAW comparisons between countries.
DOI: 10.6084/m9.figshare.11471277
title: MOESM2 of Identification of diagnostic biomarkers in patients with gestational diabetes mellitus based on transcriptome gene expression and methylation correlation analysis

description: Additional file 2: Table S2. Identification of key epigenetics driven genes in GDM. A total of 242 methylation sites were significantly negatively correlated with their promoter region methylation
DOI: 10.6084/m9.figshare.11471277.v1
title: MOESM2 of Identification of diagnostic biomarkers in patients with gestational diabetes mellitus based on transcriptome gene expression and methylation correlation analysis

description: Additional file 2: Table S2. Identification of key epigenetics driven genes in GDM. A total of 242 methylation sites were significantly negatively correlated with their promoter region methylation
DOI: 10.6084/m9.figshare.11471271
title: MOESM1 of Identification of diagnostic biomarkers in patients with gestational diabetes mellitus based on transcriptome gene expression and methylation correlation analysis

description: Additional file 1: Table S1. The results of GO terms and KEGG pathway enrichment of DEGs
DOI: 10.6084/m9.figshare.11471271.v1
title: MOESM1 of Identification of diagnostic biomarkers in patients with gestational diabetes mellitus based on transcriptome gene expression and methylation correlation analysis

description: Additional file 1: Table S1. The results of GO terms and KEGG pathway enrichment of DEGs
DOI: 10.6084/m9.figshare.11471235
title: MOESM6 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 6 Results from a STRING database search for the candidate gene NOX3
DOI: 10.6084/m9.figshare.11471235.v1
title: MOESM6 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 6 Results from a STRING database search for the candidate gene NOX3
DOI: 10.6084/m9.figshare.11471229
title: MOESM5 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 5. Heritability (h2) estimates from the polygenic model (GenABEL) for all of the traits
DOI: 10.6084/m9.figshare.11471229.v1
title: MOESM5 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 5. Heritability (h2) estimates from the polygenic model (GenABEL) for all of the traits
DOI: 10.6084/m9.figshare.11471220
title: MOESM4 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 4. Allele frequencies for the significant SNPs from the case-control analyses
DOI: 10.6084/m9.figshare.11471214
title: MOESM3 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 3. Pairwise LD (r2) for the top SNPs by chromosome
DOI: 10.6084/m9.figshare.11471220.v1
title: MOESM4 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 4. Allele frequencies for the significant SNPs from the case-control analyses
DOI: 10.6084/m9.figshare.11471214.v1
title: MOESM3 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 3. Pairwise LD (r2) for the top SNPs by chromosome
DOI: 10.6084/m9.figshare.11471208
title: MOESM2 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 2. List of genes within +/− 1 Mb from the associated loci
DOI: 10.6084/m9.figshare.11471208.v1
title: MOESM2 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 2. List of genes within +/− 1 Mb from the associated loci
DOI: 10.6084/m9.figshare.11471199
title: MOESM1 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 1. Summaries of glm and lm models
DOI: 10.6084/m9.figshare.11471199.v1
title: MOESM1 of Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: Additional file 1. Summaries of glm and lm models
DOI: 10.6084/m9.figshare.11471112
title: MOESM7 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 7 Literature evidence of the mined-out TF regulatory modules.
DOI: 10.6084/m9.figshare.11471112.v1
title: MOESM7 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 7 Literature evidence of the mined-out TF regulatory modules.
DOI: 10.6084/m9.figshare.11471103
title: MOESM6 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 6 Detailed expression coherence test results for the 40 different conditions. In this file, the details of the test results of the expression coherence tests for the module-inferred functional targets and the original TF binding dataset in 40 different expression conditions are archived.
DOI: 10.6084/m9.figshare.11471103.v1
title: MOESM6 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 6 Detailed expression coherence test results for the 40 different conditions. In this file, the details of the test results of the expression coherence tests for the module-inferred functional targets and the original TF binding dataset in 40 different expression conditions are archived.
DOI: 10.6084/m9.figshare.11471094
title: MOESM5 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 5 Expression coherence test summary. In this file, the results of the expression coherence tests for the module-inferred functional targets and the original TF binding dataset in 40 different expression conditions are summarized.
DOI: 10.6084/m9.figshare.11471094.v1
title: MOESM5 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 5 Expression coherence test summary. In this file, the results of the expression coherence tests for the module-inferred functional targets and the original TF binding dataset in 40 different expression conditions are summarized.
DOI: 10.6084/m9.figshare.11471082
title: MOESM4 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 4 Protein interaction prevalence test results. The results of protein interaction prevalence enrichment tests for the module-inferred functional targets and the original TF binding data.
DOI: 10.6084/m9.figshare.11471082.v1
title: MOESM4 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 4 Protein interaction prevalence test results. The results of protein interaction prevalence enrichment tests for the module-inferred functional targets and the original TF binding data.
DOI: 10.6084/m9.figshare.11471070
title: MOESM3 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 3 Ontology enrichment test results. The ontology enrichment tests performed for the module-inferred functional binding targets and the original TF binding dataset in three different ontology categories: biological process, molecular function and cellular component.
DOI: 10.6084/m9.figshare.11471070.v1
title: MOESM3 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 3 Ontology enrichment test results. The ontology enrichment tests performed for the module-inferred functional binding targets and the original TF binding dataset in three different ontology categories: biological process, molecular function and cellular component.
DOI: 10.6084/m9.figshare.11471064
title: MOESM2 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 2 The module inferred functional binding targets. In this file, the module-inferred functional TF binding target genes for the 182 TFs considered in this research are listed.
DOI: 10.6084/m9.figshare.11471064.v1
title: MOESM2 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 2 The module inferred functional binding targets. In this file, the module-inferred functional TF binding target genes for the 182 TFs considered in this research are listed.
DOI: 10.6084/m9.figshare.11471052
title: MOESM1 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 1 The mined-out TF regulatory modules. The TF regulatory modules mined out by the proposed module mining algorithm with their corresponding p-values.
DOI: 10.6084/m9.figshare.11471052.v1
title: MOESM1 of Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast

description: Additional file 1 The mined-out TF regulatory modules. The TF regulatory modules mined out by the proposed module mining algorithm with their corresponding p-values.
DOI: 10.6084/m9.figshare.11471019
title: MOESM2 of A genome-skimmed phylogeny of a widespread bryozoan family, Adeonidae

description: Additional file 2. Expanded overview of metadata associated with the samples.
DOI: 10.6084/m9.figshare.11471016
title: MOESM9 of HIF1/2-exerted control over glycolytic gene expression is not functionally relevant for glycolysis in human leukemic stem/progenitor cells

description: Additional file 9: Supplemental Table 2. transcriptome data.
DOI: 10.6084/m9.figshare.11471019.v1
title: MOESM2 of A genome-skimmed phylogeny of a widespread bryozoan family, Adeonidae

description: Additional file 2. Expanded overview of metadata associated with the samples.
DOI: 10.6084/m9.figshare.11471016.v1
title: MOESM9 of HIF1/2-exerted control over glycolytic gene expression is not functionally relevant for glycolysis in human leukemic stem/progenitor cells

description: Additional file 9: Supplemental Table 2. transcriptome data.
DOI: 10.6084/m9.figshare.11471010
title: MOESM8 of HIF1/2-exerted control over glycolytic gene expression is not functionally relevant for glycolysis in human leukemic stem/progenitor cells

description: Additional file 8: Supplemental Table 1. ChIPseq data.
DOI: 10.6084/m9.figshare.11471010.v1
title: MOESM8 of HIF1/2-exerted control over glycolytic gene expression is not functionally relevant for glycolysis in human leukemic stem/progenitor cells

description: Additional file 8: Supplemental Table 1. ChIPseq data.
DOI: 10.6084/m9.figshare.11471004
title: MOESM9 of An atypical HLH transcriptional regulator plays a novel and important role in strawberry ripened receptacle

description: Additional file 9 All the genes down-regulated in strawberry FaPRE1-RNAi receptacles (fold change RNAi) and up-regulated in strawberry red receptacle (fold ripening). Gene ID and corresponding annotations as reported in Fragaria vesca Genome Database (https://www.rosaceae.org/) [73].
DOI: 10.6084/m9.figshare.11471004.v1
title: MOESM9 of An atypical HLH transcriptional regulator plays a novel and important role in strawberry ripened receptacle

description: Additional file 9 All the genes down-regulated in strawberry FaPRE1-RNAi receptacles (fold change RNAi) and up-regulated in strawberry red receptacle (fold ripening). Gene ID and corresponding annotations as reported in Fragaria vesca Genome Database (https://www.rosaceae.org/) [73].
DOI: 10.6084/m9.figshare.11470971
title: MOESM5 of An atypical HLH transcriptional regulator plays a novel and important role in strawberry ripened receptacle

description: Additional file 5. Analysis by qRT-PCR of FaPRE1, FaPRE2 and FaPRE3 gene expression in strawberry transgenic receptacle agroinfiltrated with the RNAi-FaPRE1 construct. Control: receptacle agroinfiltrated with the empty pFRN vector; Pool 1, 2 and 3: receptacles agroinfiltrated with FaPRE1-pFRN construct.
DOI: 10.6084/m9.figshare.11470971.v1
title: MOESM5 of An atypical HLH transcriptional regulator plays a novel and important role in strawberry ripened receptacle

description: Additional file 5. Analysis by qRT-PCR of FaPRE1, FaPRE2 and FaPRE3 gene expression in strawberry transgenic receptacle agroinfiltrated with the RNAi-FaPRE1 construct. Control: receptacle agroinfiltrated with the empty pFRN vector; Pool 1, 2 and 3: receptacles agroinfiltrated with FaPRE1-pFRN construct.
DOI: 10.6084/m9.figshare.11470965
title: MOESM4 of An atypical HLH transcriptional regulator plays a novel and important role in strawberry ripened receptacle

description: Additional file 4. Phenotypic analysis of F. × ananassa “Chandler” in vitro plants grown in N30K medium supplemented with hormones. (A) General view of control plants (CONTROL) and treated plants with gibberellic acid (GA3) and paclobutrazol (PBZ) after 11 dpt. Analysis by qRT-PCR of FaPRE1, FaPRE2 and FaPRE3 expression in leaves (B), pedicels (C) and roots (D) from in vitro strawberry plants (F. × ananassa “Chandler”) treated with GA3 and PBZ. Mean values ± SD of three independent experiments are shown. CONTROL, plants in N30K medium; GA3, plants in N30K medium supplemented with GA3 100 μM; PBZ, plants in N30K medium supplemented with paclobutrazol 100 μM. Statistical significance with respect to the reference sample (Control) was determined by the Student’s t-test: *p
DOI: 10.6084/m9.figshare.11470965.v1
title: MOESM4 of An atypical HLH transcriptional regulator plays a novel and important role in strawberry ripened receptacle

description: Additional file 4. Phenotypic analysis of F. × ananassa “Chandler” in vitro plants grown in N30K medium supplemented with hormones. (A) General view of control plants (CONTROL) and treated plants with gibberellic acid (GA3) and paclobutrazol (PBZ) after 11 dpt. Analysis by qRT-PCR of FaPRE1, FaPRE2 and FaPRE3 expression in leaves (B), pedicels (C) and roots (D) from in vitro strawberry plants (F. × ananassa “Chandler”) treated with GA3 and PBZ. Mean values ± SD of three independent experiments are shown. CONTROL, plants in N30K medium; GA3, plants in N30K medium supplemented with GA3 100 μM; PBZ, plants in N30K medium supplemented with paclobutrazol 100 μM. Statistical significance with respect to the reference sample (Control) was determined by the Student’s t-test: *p
DOI: 10.6084/m9.figshare.11470950
title: MOESM2 of An atypical HLH transcriptional regulator plays a novel and important role in strawberry ripened receptacle

description: Additional file 2. Subfamily classification of 182 plant bHLH/HLH sequences examined in this study and additional information.
DOI: 10.6084/m9.figshare.11470950.v1
title: MOESM2 of An atypical HLH transcriptional regulator plays a novel and important role in strawberry ripened receptacle

description: Additional file 2. Subfamily classification of 182 plant bHLH/HLH sequences examined in this study and additional information.