cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26150842.v1
title: Changes in wing resonance in dried preserved crickets

description: Male crickets sing to attract females for mating. Sound is produced by tegminal stridulation, one wing bears a plectrum and the other a wing vein modified with cuticular teeth. The carrier frequency (<i>f</i><sub><em>c</em></sub>) of the call is dictated by the wing resonance and the rate of tooth strikes. Therefore, the <i>f</i><sub><em>c</em></sub> varies across species due to the size of the vibrating membranes and/or the speed of tooth strikes. But how well is the resonant frequency (<i>f</i><sub><em>o</em></sub>) conserved in dried preserved specimens? This project is designed to investigate the gradual change in cricket wing <i>f</i><sub><em>o</em></sub> over time with aims to produce equations that help to predict or recover the original natural frequency of wing vibration in preserved crickets and allies. Using Laser Doppler vibrometry we scanned the wings of living specimens to determine their <i>f</i><sub><em>o</em></sub>, the specimens were then preserved allowing us to continue measuring the wings <i>f</i><sub><em>o</em></sub> as they desiccate. We found that after the first week, <i>f</i><sub><em>o</em></sub><i> </i>increases steeply, reaching plateau and stabilising for the following months. We go on to propose a model that can be used to recover the main <i>f</i><sub><em>o</em></sub> of the wings of preserved Ensifera that use pure tones for communication. Models were corroborated using preserved specimens previously recorded and mounted in dry collections for more than 10 years.
DOI: 10.17632/f956zrvd6z
title: Preoperative PET/CT SUVmax Correlates with Breslow Thickness and Predicts Survival in Melanoma: A Retrospective Cohort Study

description: Figure S1. Linear regression analysis highlighting the stronger correlation between SUVmax and tumor thickness specifically in acral lentiginous melanoma (ALM) cases (r=0.828, p&lt;0.001).
DOI: 10.6084/m9.figshare.14462163.v1
title: Survey: Effect of Lean Manufacturing Tools on the Company's Environmental Performance

description: This document contain a survey with 17 lean manufacturing tools and their items. Also contain aspects associated to Economic sustainability, social sustainability and environmental sustainability.<br>
DOI: 10.6084/m9.figshare.14074223.v1
title: Diverse intracellular inclusion types within magnetotactic bacteria: implications for biogeochemical cycling in aquatic environments

description: Data of magnetosome sizes in strain WYHS-1 cells and gene analysis for inclusions (e.g. sulfur (S<sup>0</sup>) globule, Ca/Mg-rich polyphosphate granule, CaCO<sub>3</sub>, and vacuole) forming among MTB strains.
DOI: 10.6084/m9.figshare.28430612.v2
title: lightweight-airplane-dataset

description: This is the dataset of the Lightweight Aircraft experiments associated with the paper "Testing CPS with Design Assumptions-Based Metamorphic Relations and Genetic Programming" authored by Claudio Mandrioli, Seung Yeob Shin, Domenico Bianculli, and Lionel Briand.
DOI: 10.17632/dcks8kscf4
title: Determinant of Foreign Direct Investment in Sub-Saharan African Countries: Role of Third Country Effects

description: This study analyzes the spatial determinant of FDI in SSA. The spatial maps were collected from the global administrative area, while other data were sourced from sources such as UNCTAD, WDI, WGI, and CEPII
DOI: 10.6084/m9.figshare.3563784.v1
title: Supplement 1. R script and input data file for creating multilevel models using the forest herb data set described in the main text.

description: File List MLM.R (md5: 432ae9cbc2a4a0ff70c8a2c3e5d7de05) MLM_dataset.csv (md5: 6519956fea79f678e665ee50fdcba301) Description The code included in MLM.R uses the forest herb data in MLM_dataset.csv to create multilevel models, analyze the significance of random effects, and compare the best multilevel model to CCA, RDA, and NMDS using the same data.
DOI: 10.6084/m9.figshare.3524240.v1
title: Supplement 1. Fully abstracted biological and methodological data (and associated literature citations) used in a cross-system meta-analysis of correlates of the strength of trophic cascades.

description: File List Supplement1.csv -- data from the 114 studies used in the meta-analysis Description This file contains data from the 114 studies used in the meta-analysis. The first line contains column headings that are defined below. At the bottom of Supplement1.csv are 3 rows for QA/QC. Labels for these rows can be found at the right side of the spreadsheet. In order, from top to bottom, the columns provide: (1) sum of all data in the column, (2) number of non-numeric cells in the column, and (3) number of missing values in the column. At the right side of Supplement1.csv, for each row of the spreadsheet, 3 columns provide: (1)sum of all data in the row, (2) number of non-numeric cells in the row, and (3) number of missing values in the row. In the file Supplement1.csv each line within the predator, herbivore, and plant sections contains information for a species, if named in the original study. If not named, these data were generally lumped into a single category. Thus, a single study can be represented by several lines of data. Most analyses were done, as per the Methods section, on means across categories. Text description, values, and units of factors from Supplement1.csv: -- TABLE: Please see in attached file. --
DOI: 10.6084/m9.figshare.6957401.v1
title: Dataset of six IDF files of 15-story buildings with urban context from São Paulo Brazil

description: This dataset consists of six IDF 15-story buildings with commerce in the ground floor level and residential apartments in the remaining floors. The buildings are integrated in urban context for shadowing and reflection from surroundings. The buildings were automatically generated using EPSAP algorithm that is being developed under Ren4EEnIEQ project (http://www.adai.pt/ren4eenieq/). The files a prepared to run in EnergyPlus v8.9.0 (http://www.energyplus.net) with weather data of São Paulo, Brazil.
DOI: 10.17605/osf.io/mpk6q
title: Long-term biodiversity erosion: Limited co-existence of the Eurasian zebra mussel and native mussels in a North American river after 25 years

description: Freshwater mussel survey data collected in the Richelieu River, Quebec, Canada
DOI: 10.17632/5w7kv9z2s4
title: Data for "A DSGE Model of Energy Efficiency with Vintage Capital in Chinese Industry"

description: The data set includes all the data and code used to generate the tables and figures in the manuscript "A DSGE Model of Energy Efficiency with Vintage Capital in Chinese Industry" with detailed instructions in the Readme file and detailed notations in the Stata do files and Matlab programs. For detail, see the README file.
DOI: 10.6084/m9.figshare.1296299.v3
title: Spatio-temporal analysis of the accuracy of Tropical Multisatellite Precipitation Analysis 3B42 precipitation data in mid-high latitudes of China

description: The main objective of our study is to assess the accuracy of TMPA 3B42 V7 (hereinafter referred to as TMPA V7) data over the mid-high latitude region of China. This region is situated beyond the nominal coverage (38 NS) of the TRMM Microwave Imager (TMI) and Precipitation Radar (PR). Obviously, large bias and error would exist over this region. We provide a systematic evaluation of TMPA V7 in terms of precipitation amounts and occurrency of precipitation events.
DOI: 10.6084/m9.figshare.20217755.v1
title: Protecting biodiversity to support ecosystem services: An analysis of tradeoffs and synergies in southwestern China

description: 1. Biodiversity plays a key role in supporting ecosystem services. Understanding this relationship sheds light on the linkages between ecological structure and functioning, thereby increasing the capacity for effective strategies of ecosystem conservation and restoration. 2. Focusing on southwestern China, a global biodiversity hotspot, we evaluated the spatial correlations between biodiversity and four regulating services and one cultural service. We calculated critical points of change in the relationship between biodiversity and each of these ecosystem services and categorized the region into “threshold”, “sensitive”, “saturation”, “recession”, and “low-value” areas. 3. The results show that the spatial correlation between biodiversity and regulating services was mainly positive in the Nujiang River and Lancang River basins and the Dayao Mountains, while biodiversity was negatively correlated with provisioning and cultural services in the Qionglai and Hengduan Mountains. The slope value of the curve fitted for the biodiversity-ecosystem services relationship was approximately 1 when species richness was approximately 50; the corresponding areas were termed threshold areas and were pivotal zones of change in the biodiversity-ecosystem services relationship. These areas were mainly distributed in the Qionglai Mountains, Hengduan Mountains, and the Nujinag River Basin, and should be prioritized for monitoring and biodiversity protection. 4. Synthesis and applications: our findings can help improve understanding of the spatially complex interactions between biodiversity and multiple ecosystem services, as well as identifying areas that should be prioritized for protection and restoration; they also contribute towards a scientific framework for integrated management and policy in general.
DOI: 10.6084/m9.figshare.24258418.v1
title: Source data.zip

description: The data source for "Imperceptive and Reusable Dermal Surface EMG for Lower Extremity Neuro-Prosthetic Control and Clinical Assessment"<br>
DOI: 10.6084/m9.figshare.11956332.v1
title: BSI in paired channels.xlsx

description: The BSI in paied channels before and immediately after rTMS<br>
DOI: 10.6084/m9.figshare.17869064.v1
title: Seurat object for the spatial transcriptomic data of sample HCM1268A

description: Seurat object for the spatial transcriptomic data of sample HCM1268A
DOI: 10.6084/m9.figshare.21779609.v1
title: Bottom-up and top-down controls on Alteromonas macleodii lead to different dissolved organic matter compositions

description: Bottom-up (e.g. substrate) and top-down (e.g. viral lysis) controls affect the abundance and diversity of marine bacterial communities. However, the effects of bottom-up and top-down controls on the molecular composition of dissolved organic matter (DOM) have not been evaluated in parallel. In this study, we investigated the DOM composition of the model bacterium <em>Alteromonas macleodii</em> ATCC 27126 growing on different substrates (glucose, laminarin, extracts from a <em>Synechococcus</em> culture, oligotrophic seawater and eutrophic seawater). We also characterized the DOM when <em>A. macleodii</em> was exposed to a lytic phage. The ultra-high resolution mass spectrometry showed that when growing on different substrates <em>A. macleodii </em>prefer to use reduced, saturated organic molecules (i.e. nitrogen-containing molecules (O4 formular species)) and released or preserved oxidized, unsaturated molecules (i.e. sulfur-containing formulas (O6 formular species)). When infected with the lytic phage, <em>A. macleodii</em> produced organic molecules with higher hydrogen saturation, and more nitrogen- or sulfur-containing molecules (N2O, N3O and NOS formular species). Our results provide molecular evidence that bottom-up (i.e. varying substrates) and top-down (i.e. viral lysis) controls leave different molecular fingerprints in the produced organic matter, which lead to different biogeochemical impacts in the ocean.
DOI: 10.6084/m9.figshare.1423445.v3
title: HOME 53

description: This accompanies the article "Relation of Childhood Home Environment to Cortical Thickness in Late Adolescence" by Brian B. Avants, Daniel A. Hackman, Laura Betancourt, Gwen M. Lawson, Hallam Hurt, and Martha J. Farah. This is collaborative work between CHOP and UPenn - please see the original article for details. Please see the pdf for the data discussion.
DOI: 10.6084/m9.figshare.29195249.v1
title: A hybrid neural network-based model for landslide susceptibility mapping_data

description: Landslides represent one of the most destructive geological hazards worldwide, where susceptibility assessment serves as a critical component in regional landslide risk management. To address the limitations of conventional methods in spatial representation, class imbalance handling, and temporal feature extraction, this study proposes a Buffer-SMOTE-Transformer comprehensive optimization framework. The framework integrates geospatial buffer sampling techniques to refine negative sample selection, employs SMOTE algorithm to effectively resolve class imbalance issues, and incorporates a weighted hybrid Transformer network to enhance modeling capability for complex geographical features. An empirical analysis conducted in China's Guangdong Province demonstrates that the BST model reveals the varying impacts of sample selection, dataset construction, and model performance on assessment outcomes. The framework achieves significant superiority over conventional machine learning methods (Random Forest, LGB) in key metrics, with AUC reaching 0.964 and Recall attaining 0.953. These findings not only elucidate the cascading amplification effects of comprehensive optimization in susceptibility modeling but also establish a novel technical pathway for large-regional-scale geological hazard risk assessment.
DOI: 10.6084/m9.figshare.7093715.v1
title: The isotopic evolution of the Kohistan Ladakh arc from subduction initiation to continent arc collision

description: Data and Concordia plots of data samples.
DOI: 10.6084/m9.figshare.10264832.v5
title: Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.

description: Additional files generated upon qualification and validation of pepper transcriptome under abiotic stresses Statistical summary of RNA-seq for each sample.xlsx --- Detailed pepper RNA-seq information used in this study DEG result for each stress.zip --- DEG information from four abiotic stresses Normalized TMM.zip --- Expression profiling of TMM normalized data from four abiotic stresses GO enrichment analysis result.zip --- Results of GO enrichment analysis from four abiotic stresses Programs and code information.docx --- Programs and codes used in the RNA-seq data processing‬<br>
DOI: 10.6084/m9.figshare.14987937.v1
title: Supplementary Material for: A Randomized Clinical Trial of Cognitive-Behavioral Therapy for Insomnia to Augment Posttraumatic Stress Disorder Treatment in Survivors of Interpersonal Violence

description: <b><i>Introduction:</i></b> Individuals exposed to interpersonal violence (IPV) commonly develop posttraumatic stress disorder (PTSD) with co-occurring depression and insomnia. Standard PTSD interventions such as cognitive processing therapy (CPT) do not typically lead to remission or improved insomnia. Cognitive behavioral therapy for insomnia (CBTi) improves insomnia in individuals with PTSD, but PTSD severity remains elevated. <b><i>Objective:</i></b> To determine whether sequential treatment of insomnia and PTSD is superior to treatment of only PTSD. <b><i>Methods:</i></b> In a 20-week trial, 110 participants exposed to IPV who had PTSD, depression and insomnia were randomized to CBTi followed by CPT or to attention control followed by CPT. Primary outcomes following CBTi (or control) were the 6-week change in score on the Insomnia Severity Index (ISI), the Clinician-Administered PTSD Scale (CAPS), and the Hamilton Rating Scale for Depression (HAM-D). Primary outcomes following CPT were the 20-week change in scores. <b><i>Results:</i></b> At 6 weeks, the CBTi condition had greater reductions in ISI, HAM-D, and CAPS scores than the attention control condition. At 20 weeks, participants in the CBTi+CPT condition had greater reductions in ISI, HAM-D, and CAPS scores compared to control+CPT. Effects were larger for insomnia and for depression than for PTSD. Similar patterns were observed with respect to clinical response and remission. A tipping point sensitivity analyses supported the plausibility of the findings. <b><i>Conclusions:</i></b> The sequential delivery of CBTi and CPT had plausible, significant effects on insomnia, depression, and PTSD compared to CPT alone. The effects for PTSD symptoms were moderate and clinically meaningful.
DOI: 10.6084/m9.figshare.25033928.v1
title: StyleGAN2 Generated Dataset for CNN training

description: Synthetic Dataset used in training CNN Models with four classes of facial acne severity: Healthy, Mild, Moderate and Severe
DOI: 10.6084/m9.figshare.3512318.v1
title: Appendix B. A table providing an overview of all model parameters and their estimated values.

description: A table providing an overview of all model parameters and their estimated values.
DOI: 10.17632/dxx5khdzjs
title: Data from: Social associations across species during nocturnal bird migration

description: Code and data required to reproduce the analysis presented in the research paper "Social associations across species during nocturnal bird migration."
DOI: 10.6084/m9.figshare.22672540.v1
title: North American bird species

description: The acoustic events are used in the controlled computational experiment.
DOI: 10.6084/m9.figshare.12497177.v4
title: Network Analysis of Internal Migration in Croatia - Supplementary Material

description: Supplementary material for the manuscript: "Network Analysis of Internal Migration in Croatia". Contains network analysis node and structural indicators, and link development model data and calculations.<br>
DOI: 10.6084/m9.figshare.22492720.v1
title: FuelSubsidyRestuctureQuestionnaire

description: FuelSubsidyRestuctureQuestionnaire
DOI: 10.6084/m9.figshare.22639870.v1
title: ASV table, taxonomy table and metadata

description: Table of amplicon sequence variants (ASV), corresponding taxonomy assignment and metadata. Dataset is ready for analysis in the MicrobiomeAnalyst package
DOI: 10.6084/m9.figshare.22698850.v3
title: data from Zhao et al

description: Molecular dynamics simulation and sensitivity analysis results
DOI: 10.6084/m9.figshare.22336732.v1
title: Co-assembled metagenomic reads from Epibolus pulchripes and Glomeris connexa

description: Quality-filtered metageomic-assembled reads from two millipede species (<em>Epibolus pulchripes</em> and <em>Glomeris connexa</em>). The co-assembly came from three replicates (PRJNA948469) from each millipede species. The six reads were <em>de novo </em>assembled with MEGAHIT v1.2.9, and contigs &lt;1 kbp were removed.
DOI: 10.6084/m9.figshare.22644607.v1
title: Data: A survey of water chemistry used in zebrafish facilities and their effects on early zebrafish development

description: These data include the raw data from our Survey displayed in the Manuscript in Figures 1 to 3. It also includes the raw data for experiments 1 and 2 that are summarized in figures 4 and 5 of the associated manuscript. Experiment 1 is on the effects of analar grade salts and CO<sub>2</sub> on the development and growth of zebrafish up to 4 dpf. Experiment 2 is on the effects of commercial marine salts and CO2 on the development and growth of zebrafish up to 4 dpf.
DOI: 10.6084/m9.figshare.25745325.v1
title: Curated LOTUS database

description: Curated database of natural products and their corresponding kingdom classification (e.g. GBIF Backbone Taxonomy, Catalogue of Life) from the LOTUS database (https://lotus.naturalproducts.net/). df_curated.csv data for Github Repository at https://github.com/SIBERanalytics/NPTaxonomy/
DOI: 10.17632/6r36skj6s6
title: Single cell RNA seq: AD#1/NDC#1, Day 60

description: Deposited files represent data from the article Vanova et al., 2023: Cerebral organoids derived from patients with Alzheimer’s disease with PSEN1/2 mutations have defective tissue patterning and altered development. Published in Cell Reports. 

This publication describes modeling Alzheimer's disease in the dish using patients-derived human induced pluripotent stem cells (iPSCs). iPSCs were used to generate 3D cerebral organoids, grown for 60 days and analyzed using scRNA-seq. Data from Non-demented control organoids (final_D1_sub), AD organoids (final_D2_sub) organoids are visualized in the manuscript in Figure 4 and S4. Data from integrated analysis of both non-demented control and AD organoids (final_D1D2_int) are visualized in the manuscript in Figure 5 and S5.

Here, we deposit files for interactive visualization with PAGODA. PAGODA can be accessed using the following link: http://pklab.med.harvard.edu/nikolas/pagoda2/frontend/current/pagodaLocal/index.html
DOI: 10.6084/m9.figshare.26379898.v1
title: <b>Global patterns and drivers of soil dissolved organic carbon concentration</b>

description: Dissolved organic carbon (DOC), being the most active carbon pool in soils, plays a crucial role in soil carbon cycling, plant productivity, and global climate change. Assessing the amount of soil DOC is essential for accurately understanding ecosystem functioning and services. Nevertheless, the global driving factors and distribution of soil DOC remain inadequately quantified because of the scarcity of large-scale data. Here, a comprehensive database of global 12807 soil DOC concentration from 975 target literature was constructed. Detailed geographic location, climate, and soil properties are also recorded as the predictors of soil DOC. Machine learning techniques were employed to assess the relative importance of various predictors in determining soil DOC concentration and subsequently extended predictions to a global scale. Global soil DOC concentration ranged widely from 0.04 to 7859 mg kg-1, with the average of 222.78 mg kg-1. The selected 12 variables (including soil properties, month, climate, and ecosystem) could explain 65% of the variance in soil DOC concentration. Elevation, soil clay, and soil organic carbon were the first three important predictors. The predicted soil DOC concentration increased significantly from the equator to the poles. Soil DOC stock in the topsoil layer (0-30 cm) amounts to 12.17 Pg, with huge variations observed across the different continents. Our results are instrumental for informing strategies on soil management practices, climate change mitigation, and ecosystem services. In addition, our database combines with other carbon pool to explore total soil carbon turnover and constrain Earth carbon models.
DOI: 10.6084/m9.figshare.3084643.v2
title: Understanding Financial Market States Using An Artificial Double Auction Market

description: This file is simulation data using an Artificial Double Auction Market.