cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.656793
title: Reconstructing a B-cell clonal lineage: Antigen Receptor Probabilistic Parser (ARPP) software and Clone K/H FASTA files

description: These files are supplementary to the paper “Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors”, which describes the inference of the unmutated ancestor to a set of clonally related antibody genes. The software that implements the methods described is called ARPP UAI, for antigen receptor probabilistic parser: unmutated ancestor inference. setup.exe is the installer for ARPP UAI. Double click the icon, and follow the steps as indicated in the installation wizard. It will install the program and create an icon on your desktop. The program requires a windows operating system to run. ARPP QuickStart is a very brief manual describing how to run the program and interpret its output. CL558(CloneK).fasta and GenbankIgHC2(CloneH).fasta are data input files that can be used to test the installation. These are the datasets that were used to generate the results in the paper. The first of these is a small clone of human kappa sequences, called Clone K in the paper. The latter is a large clone of human heavy chain sequences, called Clone H in the paper.
DOI: 10.6084/m9.figshare.656810.v2
title: Zarządzanie wartością przedsiębiorstwa na przykładzie przedsiębiorstw z branży produkcyjnej maszyn i samochodów

description: Analiza zarządzania wartością przedsiębiorstwa
DOI: 10.6084/m9.figshare.656804.v1
title: The March 15 Solar Eruption and St. Patrick’s Day (March 17) Geomagnetic Storm

description: A description of the March 15 solar flare and March 17 (St. Patrick's Day) geomagnetic storm
DOI: 10.6084/m9.figshare.656745
title: Gaussian Job Archive for C24H54Li6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.656745.v1
title: Gaussian Job Archive for C24H54Li6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.655976
title: Ichthyophonus de novo (Fish 546)

description: This record includes files that resulted from <em>de novo</em> assembly of short read (Illumina PE100) genomic data from the parasite<em> Ichthyophonus</em>. I would like to acknowledge K. Nichols for supplying the data for this analysis. Files included in this data set: <strong>Ichthlyophonus de novo (Fish546).pdf; </strong>Presentation giving overview of project and summary results. <strong>AssemblyParameters.pdf; </strong>Software settings for CLC and SOAPdenovo assemblers. <strong>11186ContigSummary.csv; </strong>Tablular data for contig length and coverage from CLC assembly. <strong>SoapContigSummary.csv; </strong>Tabular data for contig length and coverage from SOAPdenovo assembly. <strong>CLC_Choanoflagellate_Blast_GO_Annot...csv; </strong>Blast results from annotated Choanoflagellate genome query on <em>Ichthyophonus</em> contig database from CLC. File is a merger of blast results and annotation table. <strong>CLC_Fungi_Blast_GO_Annotations.csv; </strong>Blast results from annotated Fungal genome query on <em>Ichthyophonus</em> contig database from CLC. File is a merger of blast results and annotation table. <strong>CLC_Metazoa_Blast_GO_Annotations.csv; </strong>Blast results from annotated Metazoan genome query on <em>Ichthyophonus</em> contig database from CLC. File is a merger of blast results and annotation table. <strong>SOAP_Choanoflagellate_Blast_GO_Anno...csv; </strong>Blast results from annotated Choanoflagellate genome query on <em>Ichthyophonus</em> contig database from SOAP. File is a merger of blast results and annotation table. <strong>SOAP_Fungi_Blast_GO_Annotations.csv; </strong>Blast results from annotated Fungal genome query on <em>Ichthyophonus</em> contig database from SOAP. File is a merger of blast results and annotation table. <strong>SOAP_Metazoan_Blast_GO_Annotations.csv; </strong>Blast results from annotated Metazoan genome query on <em>Ichthyophonus</em> contig database from SOAP. File is a merger of blast results and annotation table. <strong>CLC_OpenReadingFrames.bed</strong><strong>;</strong> Bed file with putative Open Reading Frames from the CLC assembly, produced by EMBOSS "getorf" funcion, implemented in Galaxy. <strong>SNP_RestrictionBed.bed;</strong> Bed file with putative SNP sites, produce by converting .gff SNP file from CLC assembly. <strong>Choanoflagellate_Blast.bed;</strong> Bed file of Choanoflagellate blast hits, converted from CLC blast output file above. <strong>Fungi_Blast.bed;</strong> Bed file of Fungal blast hits, converted from CLC blast output above. <strong>Metazoa_Blast.bed; </strong>Bed file of Metazoan blast hits, converted from CLC blast output above. <strong>igv_snapshot.png; </strong>Example of blast hits, SNPs and restriction enzyme sites displayed in Integrated Genomic Viewer.
DOI: 10.6084/m9.figshare.655976.v1
title: Ichthyophonus de novo (Fish 546)

description: This record includes files that resulted from <em>de novo</em> assembly of short read (Illumina PE100) genomic data from the parasite<em> Ichthyophonus</em>. I would like to acknowledge K. Nichols for supplying the data for this analysis. Files included in this data set: <strong>Ichthlyophonus de novo (Fish546).pdf; </strong>Presentation giving overview of project and summary results. <strong>AssemblyParameters.pdf; </strong>Software settings for CLC and SOAPdenovo assemblers. <strong>11186ContigSummary.csv; </strong>Tablular data for contig length and coverage from CLC assembly. <strong>SoapContigSummary.csv; </strong>Tabular data for contig length and coverage from SOAPdenovo assembly. <strong>CLC_Choanoflagellate_Blast_GO_Annot...csv; </strong>Blast results from annotated Choanoflagellate genome query on <em>Ichthyophonus</em> contig database from CLC. File is a merger of blast results and annotation table. <strong>CLC_Fungi_Blast_GO_Annotations.csv; </strong>Blast results from annotated Fungal genome query on <em>Ichthyophonus</em> contig database from CLC. File is a merger of blast results and annotation table. <strong>CLC_Metazoa_Blast_GO_Annotations.csv; </strong>Blast results from annotated Metazoan genome query on <em>Ichthyophonus</em> contig database from CLC. File is a merger of blast results and annotation table. <strong>SOAP_Choanoflagellate_Blast_GO_Anno...csv; </strong>Blast results from annotated Choanoflagellate genome query on <em>Ichthyophonus</em> contig database from SOAP. File is a merger of blast results and annotation table. <strong>SOAP_Fungi_Blast_GO_Annotations.csv; </strong>Blast results from annotated Fungal genome query on <em>Ichthyophonus</em> contig database from SOAP. File is a merger of blast results and annotation table. <strong>SOAP_Metazoan_Blast_GO_Annotations.csv; </strong>Blast results from annotated Metazoan genome query on <em>Ichthyophonus</em> contig database from SOAP. File is a merger of blast results and annotation table. <strong>CLC_OpenReadingFrames.bed</strong><strong>;</strong> Bed file with putative Open Reading Frames from the CLC assembly, produced by EMBOSS "getorf" funcion, implemented in Galaxy. <strong>SNP_RestrictionBed.bed;</strong> Bed file with putative SNP sites, produce by converting .gff SNP file from CLC assembly. <strong>Choanoflagellate_Blast.bed;</strong> Bed file of Choanoflagellate blast hits, converted from CLC blast output file above. <strong>Fungi_Blast.bed;</strong> Bed file of Fungal blast hits, converted from CLC blast output above. <strong>Metazoa_Blast.bed; </strong>Bed file of Metazoan blast hits, converted from CLC blast output above. <strong>igv_snapshot.png; </strong>Example of blast hits, SNPs and restriction enzyme sites displayed in Integrated Genomic Viewer.
DOI: 10.6084/m9.figshare.655971
title: Spatial competition among financial service providers and optimal contract design

description: We present a contract-based model of industrial organization that allows us to consider in unfiied way both different information frictions (moral hazard, adverse selection) and a variety of market structures (monopoly, perfect and imperfect competition, strategic interaction). We show how this method can be applied to banking and insurance industries. Transitions from extractive local monopoly organizations to globally competitive inclusive environments are discussed alongside with frictions aecting the outcome of such transitions.
DOI: 10.6084/m9.figshare.655971.v1
title: Spatial competition among financial service providers and optimal contract design

description: We present a contract-based model of industrial organization that allows us to consider in unfiied way both different information frictions (moral hazard, adverse selection) and a variety of market structures (monopoly, perfect and imperfect competition, strategic interaction). We show how this method can be applied to banking and insurance industries. Transitions from extractive local monopoly organizations to globally competitive inclusive environments are discussed alongside with frictions aecting the outcome of such transitions.
DOI: 10.6084/m9.figshare.656793.v3
title: Reconstructing a B-cell clonal lineage: Antigen Receptor Probabilistic Parser (ARPP) software and Clone K/H FASTA filesc

description: TBC
DOI: 10.6084/m9.figshare.655964
title: DMQMC on the Heisenberg model

description: Density matrix quantum Monte Carlo data on the Heisenberg model. See comments in data files and arxiv preprint for calculation details (arXiv:1303.5007, http://arxiv.org/abs/1303.5007).
DOI: 10.6084/m9.figshare.655953
title: Data from BSc honours zoology turtle project 1997

description: Data used in BSc dissertation 1997 Dissertation file available also on Figshare Variables names are shortened contact me if you require further information on them.
DOI: 10.6084/m9.figshare.655964.v2
title: DMQMC on the Heisenberg model

description: Density matrix quantum Monte Carlo data on the Heisenberg model. See comments in data files and arxiv preprint for calculation details (arXiv:1303.5007, http://arxiv.org/abs/1303.5007).
DOI: 10.6084/m9.figshare.655972.v1
title: A simple model to study phylogeographies and speciation patterns in space

description: A simple spatial model designed to study how allopatric/parapatric speciation generates communities. The original description of the model was published in arXiv in 2012 (id: 1203.1790).
DOI: 10.6084/m9.figshare.655953.v1
title: Data from BSc honours zoology turtle project 1997

description: Data used in BSc dissertation 1997 Dissertation file available also on Figshare Variables names are shortened contact me if you require further information on them.
DOI: 10.6084/m9.figshare.655964.v1
title: DMQMC on the Heisenberg model

description: Density matrix quantum Monte Carlo data on the Heisenberg model. See comments and arxiv preprint for calculation details.
DOI: 10.6084/m9.figshare.655950
title: Novel Ecosystem Restoration and Recovery Publications

description: A series of peer-reviewed publications on the restoration and ecology of novel ecosystems in Western Washington. The data collected here include projects that restored highly-distrubed former extractive lands or heavily degraded urban ecosystems. Specifically, these papers come from a restored campsite in North Cascades National Park, Washington, USA, the Union Bay Natural Area - a restored landfill in Seattle, WA, USA.
DOI: 10.6084/m9.figshare.655949
title: Columbia River Basin Projects

description: This is a series of grey literature, posters, presentations and figures on riparian ecology and plant sciences from across the Columbia and Missouri River Basins. These documents originated as a part of the PACFISH/INFISH Biological Opinion: http://www.fs.fed.us/biology/fishecology/emp/ and were created at least in part by Nate Hough-Snee: http://www.natehough-snee.org
DOI: 10.6084/m9.figshare.655949.v1
title: Columbia River Basin Projects

description: This is a series of grey literature, posters, presentations and figures on riparian ecology and plant sciences from across the Columbia and Missouri River Basins. These documents originated as a part of the PACFISH/INFISH Biological Opinion: http://www.fs.fed.us/biology/fishecology/emp/ and were created at least in part by Nate Hough-Snee: http://www.natehough-snee.org
DOI: 10.6084/m9.figshare.655615
title: ELEMENTS OF SPIRITUALITY IN RAJA RAO'S KANTHAPURAAND KIPLING'S KIM

description: 'Spirit' is a vital principle of life, the breath of God, air or wind. Spirit is more<br>than simply being physical consciousness is a part. 'Spirit' is the psyche in modern terms.<br>Spirituality is one's character or quality that makes one transcend the barriers of<br>worldliness, caste, creed and sensuality and realize one's connection with the Truth.<br>Spirituality leads one to search for and discover meaning in life, a meaning that goes<br>beyond a merely material experience, however successful. This is a deeply personal<br>search, which can bring a person to inner peace even in the presence of adverse<br>circumstances. The present paper aims to study elements of spirituality in Raja Rao's<br>Kanthapura and Rudyard Kipling's Kim.
DOI: 10.6084/m9.figshare.655808.v1
title: Measuring Biodiversity in a Changing World

description: This junior level teaching lecture examines approaches for measuring biodiversity, computing diversity statitics, and how to avoid common pitfalls when quantifying biodiversity.
DOI: 10.6084/m9.figshare.655535
title: TETRABUTYLAMMONIUM BROMIDE (TBAB) IS AN IMPORTANT COMPANION IN ORGANIC CHEMISTRY-A REVIEW

description: (A) Uptake of the reactive gas e.g. Me N on realistic aqueous interface (H2O/D2O) is 3<br>increased in the presence of fulvalic acid and tetrabutyl ammonium mixture due to their<br>strong dopant interaction.<br>(B) The bimetallic aluminium(salen) complex together with tetrabutylammonium<br>bromide act as effective catalyst for the synthesis of cyclic carbonates from epoxides and<br>2, 3<br>carbon dioxide. Thus the problem of global warming caused by carbon dioxide is<br>somehow controlled as carbon dioxide has been consumed by these reactions.
DOI: 10.6084/m9.figshare.655615.v1
title: ELEMENTS OF SPIRITUALITY IN RAJA RAO'S KANTHAPURAAND KIPLING'S KIM

description: 'Spirit' is a vital principle of life, the breath of God, air or wind. Spirit is more<br>than simply being physical consciousness is a part. 'Spirit' is the psyche in modern terms.<br>Spirituality is one's character or quality that makes one transcend the barriers of<br>worldliness, caste, creed and sensuality and realize one's connection with the Truth.<br>Spirituality leads one to search for and discover meaning in life, a meaning that goes<br>beyond a merely material experience, however successful. This is a deeply personal<br>search, which can bring a person to inner peace even in the presence of adverse<br>circumstances. The present paper aims to study elements of spirituality in Raja Rao's<br>Kanthapura and Rudyard Kipling's Kim.
DOI: 10.6084/m9.figshare.655523
title: ROLE OF ICT IN REVIEW OF ACCREDITATION, ASSESSMENT AND ACADEMIC AUDIT IN TODAY'S HIGHER EDUCATION

description: :<br>The ICTis the need of the hour for quality assurance in Higher Education as it<br>fastens the process of assessment and audit with greater transparency. It is a model that<br>can be used in assessing the quality of education in Colleges of the University. The<br>procedure of this study uses the techniques of research and development with the<br>following steps: (i) development of ICT model (ii) analysis of the model impact on the<br>performance of the affiliated colleges. The overall quality assurance framework<br>followed by National Assessment and Accreditation Council (NAAC) incorporates<br>elements of all the three basic approaches to quality assurance – accreditation,<br>assessment and academic audit. NAAC accredits institutions and certifies for the<br>educational quality of the institution. It also goes beyond the certification and provides<br>an assessment that classifies an institution on a nine-point scale indicating where the<br>institution stands in the quality continuum. This paper focus on the first two criterions<br>identified by NAAC to serve as the basis for its assessment procedure: Curricular<br>Aspects Criterion, Teaching Learning and Evaluation
DOI: 10.6084/m9.figshare.655710.v1
title: The case for open preprints in biology

description: An article on preprints in biology. It was developed on github (https://github.com/PhDP/article_preprint) and will appear in PLOS Biology.
DOI: 10.6084/m9.figshare.655535.v1
title: TETRABUTYLAMMONIUM BROMIDE (TBAB) IS AN IMPORTANT COMPANION IN ORGANIC CHEMISTRY-A REVIEW

description: (A) Uptake of the reactive gas e.g. Me N on realistic aqueous interface (H2O/D2O) is 3<br>increased in the presence of fulvalic acid and tetrabutyl ammonium mixture due to their<br>strong dopant interaction.<br>(B) The bimetallic aluminium(salen) complex together with tetrabutylammonium<br>bromide act as effective catalyst for the synthesis of cyclic carbonates from epoxides and<br>2, 3<br>carbon dioxide. Thus the problem of global warming caused by carbon dioxide is<br>somehow controlled as carbon dioxide has been consumed by these reactions.
DOI: 10.6084/m9.figshare.655420
title: THE POST-COLONIAL WOMAN IN TASLIMA NASRIN'S 'LAJJA' (SHAME)

description: Taslima Nasrin a contemporary woman novelist, born and brought up in<br>Bangladesh, vocationally trained to be a doctor, presents the agony of the post colonial<br>citizens of BanglaDesh. Their quest for self-identity is the pivotal point in her novel<br>'Lajja' - Shame. The post colonial woman belonging to the minorities in Bangladesh is<br>epitomized in Kironmoyee. She is often seen which a still posture "eyes filled with<br>plaintive entreaty. "Let us live, let us go away." But her own desire has to be sacrificed<br>because of her loyalty to her husband. When she was rooted out of the ancestral home<br>along with the other members of her family. She found it hard to adjust to her new<br>surroundings and would often wake up crying at night as "She remembered the beloved<br>home she had left behind. She would wonder if the little scaffold she had made for the<br>bean plant was still there. She would remember how the guavas in their garden were<br>really the best in town, and she hoped that the green coconut trees were still being taken<br>care of" (p. 20)
DOI: 10.6084/m9.figshare.655523.v1
title: ROLE OF ICT IN REVIEW OF ACCREDITATION, ASSESSMENT AND ACADEMIC AUDIT IN TODAY'S HIGHER EDUCATION

description: :<br>The ICTis the need of the hour for quality assurance in Higher Education as it<br>fastens the process of assessment and audit with greater transparency. It is a model that<br>can be used in assessing the quality of education in Colleges of the University. The<br>procedure of this study uses the techniques of research and development with the<br>following steps: (i) development of ICT model (ii) analysis of the model impact on the<br>performance of the affiliated colleges. The overall quality assurance framework<br>followed by National Assessment and Accreditation Council (NAAC) incorporates<br>elements of all the three basic approaches to quality assurance – accreditation,<br>assessment and academic audit. NAAC accredits institutions and certifies for the<br>educational quality of the institution. It also goes beyond the certification and provides<br>an assessment that classifies an institution on a nine-point scale indicating where the<br>institution stands in the quality continuum. This paper focus on the first two criterions<br>identified by NAAC to serve as the basis for its assessment procedure: Curricular<br>Aspects Criterion, Teaching Learning and Evaluation
DOI: 10.6084/m9.figshare.655391
title: “GROUND WATER FLUCTUATIONS IN THE KANOLA WATERSHED BASIN OF KARMALA TAHSIL, SOLAPUR DISTRICT, MAHARASHTRA”.

description: Water level fluctuations and depletion of the groundwater are the major<br>problem in the drought prone area. Just deepening of well with heavy capital investment<br>is not a proper solution. The problem is aggravated especially in the summer season. It<br>has direct bearing on food security and poverty. The present study has attempted to<br>understand fluctuations in the ground water levels in a Kanola watershed basin in the<br>drought affected areas of Maharashtra state. The study concludes that it is necessary to<br>undertake watershed development programmes in the basin taking into account specific<br>site factors to ensure groundwater availability for longer period in a year.
DOI: 10.6084/m9.figshare.655400
title: OPTIMIZATION OF PROCESS PARAMETERS FOR THE PRODUCTION OF GLUTAMINASE ENZYME FROM ERWINIAAT FLASK LEVEL.

description: This purpose of study was to determine parameter optimization for the<br>production of Glutaminase enzyme from Erwinia at flask level. This study was carried<br>out at Department of Biotechnology, Mata Gujri College, Fatehgarh Sahib, Punjabi<br>University Patiala For maximum production of glutaminase from free cells of Erwinia,<br>various physical and chemical parameters were optimized. The microorganism Erwinia<br>which is a source of glutaminase was procured from Institute of Microbial Technology,<br>Chandigarh and was grown on specified medium. The media was sterilized by<br>autoclaving for 15 minutes at 15 psi/cm2. The microorganism was maintained on agar<br>slants and kept in refrigerator at 4.0 + 0.5 0C for further use and was sub-cultured after<br>every 20 days. The viability check of microorganism was done by gram staining and<br>tryphan blue. The work utilized Beef extract, Peptone, Yeast extract, Sodium chloride<br>and Water as composition of growth medium for the production of glutaminase enzyme<br>from Erwinia. The parameters such as Temp., Ph, Time and Inducer concentration were<br>optimized.The enzyme activity was determined by Nessler's reagent method and protein<br>concentration was determined by Bradford method. It was concluded that Maximum<br>production of glutaminase enzyme from Erwinia was observed at temp.-25?C, pH-6.5 &<br>Time after-48 hours. At these optimized parameters enzyme activity and Protein<br>concentration was found maximum
DOI: 10.6084/m9.figshare.655710.v2
title: The case for open preprints in biology

description: An article on preprints in biology. It was developed on github (https://github.com/PhDP/article_preprint) and will appear in PLOS Biology.
DOI: 10.6084/m9.figshare.655172
title: LIBRARY AUTOMATION AND NETWORKING OF UNIVERSITY LIBRARIES OF UTTAR PRADESH: STATUS PROBLEMS AND PROSPECTS

description: This paper highlights the present scenario of automation and networking of<br>university libraries of Uttar Pradesh. Survey was carried out in the central, state,<br>deemed and private university libraries of Uttar Pradesh focusing the automation,<br>networking, and services.
DOI: 10.6084/m9.figshare.655391.v1
title: “GROUND WATER FLUCTUATIONS IN THE KANOLA WATERSHED BASIN OF KARMALA TAHSIL, SOLAPUR DISTRICT, MAHARASHTRA”.

description: Water level fluctuations and depletion of the groundwater are the major<br>problem in the drought prone area. Just deepening of well with heavy capital investment<br>is not a proper solution. The problem is aggravated especially in the summer season. It<br>has direct bearing on food security and poverty. The present study has attempted to<br>understand fluctuations in the ground water levels in a Kanola watershed basin in the<br>drought affected areas of Maharashtra state. The study concludes that it is necessary to<br>undertake watershed development programmes in the basin taking into account specific<br>site factors to ensure groundwater availability for longer period in a year.