cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.v6bjq5
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Altiphylax Yeriomtschenko & Szczerbak, 1984"
 ]
}

 The dataset includes 136 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005746-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffk2bv
title: Occurrence Download

description: A dataset containing 36506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "DatasetKey is Victorian Biodiversity Atlas",
 "GadmGid is AUS.10.44_1",
 "Geometry POLYGON((126.85277 -44.25579,163.14723 -44.25579,163.14723 -29.74421,126.85277 -29.74421,126.85277 -44.25579))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 36506 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005744-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13732183
title: xy_test
DOI: 10.5281/zenodo.13732184
title: xy_test
DOI: 10.15468/dl.ngk4bw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Microcebus jonahi Schüssler, Blanco, Salmona, Poelstra, Andriambeloson, Miller, Randrianambinina et al., 2020)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005747-240906103802322/datasets/export for details.
DOI: 10.15468/dl.25wxgm
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crocidura desperata Hutterer, Jenkins & Verheyen, 1991)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005748-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6u2mm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lepilemur ahmansoni Louis Jr., Engberg, Lei, Geng, Sommer, Randriamampionona, Randriamanana, Zaonarivelo et al., 2006, Lepilemur ahmansonori Louis Jr., Engberg, Lei, Geng, Sommer, Randriamampionona, Randriamanana, Zaonarivelo, Andriantompohavana, Randria, Prosper, Ramaromilanto, Rakotoarisoa, Rooney & Brenneman, 2006, Lepilemur ahmansorum Louis Jr., Engberg, Lei, Geng, Sommer, Randriamampionona, Randriamanana, Zaonarivelo, Andriantompohavana, Randria, Prosper, Ramaromilanto, Rakotoarisoa, Rooney & Brenneman, 2006)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005749-240906103802322/datasets/export for details.
DOI: 10.15468/dl.xf2cue
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crocidura picea Sanderson, 1940)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005750-240906103802322/datasets/export for details.
DOI: 10.5281/zenodo.11126926
title: Datasets and Jupyter notebook for the structural analysis of protein-RNA interface evolution

description: The present repository contains data and code related to our manuscript "Structural comparison of protein-RNA homologous interfaces reveals widespread overall conservation contrasted with versatility in polar contacts". In the manuscript, we analyze the evolution of protein-RNA interfaces by building a dataset of protein-RNA interologs (homologous interfaces) and exploring how interface contacts are conserved between homologous interfaces, as well as possible explanations for non-conserved contacts.

This repository contains the following files:



DataAnalysisNotebook.ipynb is a Jupyter notebook to reproduce contact conservation analysis and all figures from our manuscript 

2022-02-21-PDB.csv contains data from the PDB about 3D structures of complexes containing interacting protein and RNA chains (PDB structure identifier, chain identifiers, experimental technique and resolution)

2022-02-21-PDB_proteinchainscontactingRNAchains.groupbp.tsv contains more detailed information about interacting protein and RNA chains from these complexes (PDB and chain identifiers, protein and RNA size, interface size and number of contacts)

2022-02-21-PDB_proteinchainscontactingRNAchains.groupbp.txt.selectXE_2.50_p30_r10_pi5_ri5_rep_bc-100.out_RNAcl_0.99.tsv contains the same detailed information, restricted to the filtered dataset used as a starting point in our interolog search pipeline

PDBinterfaceAlign.csv contains information about the structural alignment of pairs of protein-RNA interactions (structural alignment TM-scores, sequence identity and coverage)

DataInterologsParam.tsv contains information about a pre-filtered set of 2587 potential interologs (including interface RMSD, sequence identity and coverage and interface size)

DataInterologsContacts.tsv contains detailed information about conserved and non-conserved contacts in the final set of 2022 interologs (atomic contacts, apolar contacts, hydrogen bonds, salt bridges and stacking information for aminoacid-nucleotide pairs, as well as information about whether each belongs to the interface, secondary structures, and the aminoacid surface accessibility and evolutionary conservation metrics)

DataCons.csv contains precomputed contact conservation metrics for each of the 2022 interolog pairs, for fast reproduction of manuscript figures

ListeIntraHbonds.pkl and ListeIntraSaltBridges.pkl are pickle-format data files containing intra-molecular hydrogen bonds and salt bridges (respectively) that are used to analyse scenarii of compensation for non-conserved polar contacts.
DOI: 10.15468/dl.s58qvj
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhinopithecus roxellana (A.Milne-Edwards, 1870), Rhinopithecus roxellanae (Milne-Edwards, 1870))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 41 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005751-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g35jfa
title: Occurrence Download

description: A dataset containing 540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crocidura orii Kuroda, 1924, Crocidura bovei Dobson, 1887, Crocidura foxi Dollman, 1915, Crocidura grayi Dobson, 1890, Crocidura guy Jenkins, Lunde & Moncrieff, 2009, Crocidura voi Osgood, 1910, Crocidura aoris Robinson, 1912)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 540 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005752-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grt28g
title: Occurrence Download

description: A dataset containing 274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trachypithecus pileatus (Blyth, 1843), Trachypithecus pullata (Thomas & Wroughton, 1909))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 274 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005754-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ynexr
title: Occurrence Download

description: A dataset containing 36506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "DatasetKey is Victorian Biodiversity Atlas",
 "GadmGid is AUS.10.44_1",
 "Geometry POLYGON((126.85277 -44.25579,163.14723 -44.25579,163.14723 -29.74421,126.85277 -29.74421,126.85277 -44.25579))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 36506 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005753-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13732151
title: Students' Interest and Academic Performance Datasets

description: The data are on 'Interest in Simulation and Modelling', 'Performance in Simulation and Modelling', 'Interest in Probability and Statistics', 'Performance in Probability and Statistics', 'Interest in Data Analysis', 'Performance in Data Analysis', 'Interest in Statistical Computing' and 'Performance in Statistical Computing'.
DOI: 10.5281/zenodo.13732152
title: Students' Interest and Academic Performance Datasets

description: The data are on 'Interest in Simulation and Modelling', 'Performance in Simulation and Modelling', 'Interest in Probability and Statistics', 'Performance in Probability and Statistics', 'Interest in Data Analysis', 'Performance in Data Analysis', 'Interest in Statistical Computing' and 'Performance in Statistical Computing'.
DOI: 10.15468/dl.guv5jg
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crocidura wimmeri Heim de Balsac & Aellen, 1958, Crocidura weberi Jentink, 1890, Crocidura zimmeri Osgood, 1936)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 29 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005755-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fwtkta
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Thylamys karimii (Petter, 1968))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005756-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13732189
title: xiao_test2
DOI: 10.5281/zenodo.13732190
title: xiao_test2
DOI: 10.15468/dl.sjqxbx
title: Occurrence Download

description: A dataset containing 2558 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pachydiscidae"
 ]
}

 The dataset includes 2558 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005757-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dcvxe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crocidura manengubae Hutterer, 1982)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005758-240906103802322/datasets/export for details.
DOI: 10.15468/dl.bd3d6q
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oryx dammah (Cretzschmar, 1827))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 130 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005759-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yh2cvf
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxytropis proboscidea Bunge"
 ]
}

 The dataset includes 28 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005760-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ypnr6u
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crocidura stenocephala Heim de Balsac, 1979)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005761-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26965414
title: The list of analysed textbooks.xlsx

description: This article examines the critical issue of the underrepresentation of persons with disabilities (PWD) in Kazakhstani primary school textbooks, a significant concern amidst ongoing inclusive education reforms. Despite reviewing 155 textbooks encompassing approximately 19,783 photographs of people, only seven images depicted PWD, often in reductive and stereotypical ways that reinforce able-bodied norms. Through 23 interviews with textbook production stakeholders, this research identifies key challenges such as the lack of explicit education standards, societal views, concerns about potential harm outweighing the benefits of inclusion, and the influence of Soviet-era ableism. This study contributes to the growing body of research from a Global South perspective, particularly in postcolonial contexts like Kazakhstan. Findings emphasize the urgent need for significant participation by experts and educators, professional training of textbook stakeholders, and transparency of textbook approval with the greater engagement of the public regarding the underrepresentation of PWD.
DOI: 10.6084/m9.figshare.26965414.v1
title: The list of analysed textbooks.xlsx

description: This article examines the critical issue of the underrepresentation of persons with disabilities (PWD) in Kazakhstani primary school textbooks, a significant concern amidst ongoing inclusive education reforms. Despite reviewing 155 textbooks encompassing approximately 19,783 photographs of people, only seven images depicted PWD, often in reductive and stereotypical ways that reinforce able-bodied norms. Through 23 interviews with textbook production stakeholders, this research identifies key challenges such as the lack of explicit education standards, societal views, concerns about potential harm outweighing the benefits of inclusion, and the influence of Soviet-era ableism. This study contributes to the growing body of research from a Global South perspective, particularly in postcolonial contexts like Kazakhstan. Findings emphasize the urgent need for significant participation by experts and educators, professional training of textbook stakeholders, and transparency of textbook approval with the greater engagement of the public regarding the underrepresentation of PWD.
DOI: 10.15468/dl.npgchu
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Macaca maura (Schinz, 1825), Macaco mauro (F.Schinz, 1825), Macaca maimon (de Blainville, 1839))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 56 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005762-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcmykr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crocidura trichura Dobson, 1889)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005763-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3gpr7z
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nycticebus pygmaeus Bonhote, 1907)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 35 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005764-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gbd35
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crocidura hikmiya Meegaskumbura, Meegaskumbura, Pethiyagoda, Manamendra-Arachchi & Schneider, 2007)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005765-240906103802322/datasets/export for details.
DOI: 10.15468/dl.d5qxjr
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Neofelis nebulosa (Griffith, 1821))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 60 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005766-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6ecfk
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crocidura tarella Dollman, 1915, Crocidura torello Dollman, 1915, Crocidura harenna Hutterer & Yalden, 1990)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005767-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26965384.v1
title: An Educational Knowledge Graph Question Answering Dataset with Cognitive Expressions and Language Styles

description: Educational question answering is vital for online education, with Educational Knowledge Graph Question Answering (EKGQA) focusing on leveraging knowledge bases to answer questions. However, the lack of real Chinese annotated datasets hampers EKGQA's progress. Current datasets often feature direct questions, but actual educational questions reflect varied cognitive expressions and language styles due to differing experiences and backgrounds. To address this, in this paper, we propose to benchmark such challenges for EKGQA by establishing a more realistic dataset EDUCEQ. It contains 236.3k questions in 12 categories. Compared with existing datasets, EDUCEQ features two more authentic features - diverse cognitive expressions and various language styles.Additionally, we have evaluated various categories using the EDUCEQ dataset and developed a robust baseline EKGQA method that establishes competitive benchmarks for future research.The EDUCEQ is the first to portray a more realistic view of educational phenomena from a cognitive and computational linguistics perspective, which is beneficial to educational knowledge graph question answering and also the online education field in general.
DOI: 10.15468/dl.wtgqa3
title: Occurrence Download

description: A dataset containing 282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cebuella pygmaea (Spix, 1823))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 282 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005769-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7apex
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sorex macrodon Merriam, 1895, Sorex macrurus Hodgson, 1863, Solen macrodon Anton, 1837)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005770-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.