cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.735810
title: Ant Species Presence Data for Summer 2012 at the Fort Worth Nature Center, Texas

description: This data is the ant species presence recorded for pitfall trap sampling in 17 sites of the Fort Worth Nature Center in Fort Worth, Texas. The samlpes were taken in June, July, and August 2012. The species identifications have not been officially confirmed. Voucher specimens will be deposited at Sam Houston State University in Huntsville, Texas. Data analysis is forthcoming.
DOI: 10.6084/m9.figshare.735812.v1
title: Direct Infusion Orbitrap MS data

description: mzXML files obtained by the msConvert (Proteowizard) from the RAW files acquired on the Orbitrap Velos Pro by Diect Infusion mass spectrometry using Nanomate (Advion).
DOI: 10.6084/m9.figshare.735810.v1
title: Ant Species Presence Data for Summer 2012 at the Fort Worth Nature Center, Texas

description: This data is the ant species presence recorded for pitfall trap sampling in 17 sites of the Fort Worth Nature Center in Fort Worth, Texas. The samlpes were taken in June, July, and August 2012. The species identifications have not been officially confirmed. Voucher specimens will be deposited at Sam Houston State University in Huntsville, Texas. Data analysis is forthcoming.
DOI: 10.6084/m9.figshare.735816.v1
title: A modified approach to the design of robust speed and position control of servo drives

description: In the paper a robust control of position servodrives is analysed. A modified approach to design robust speed and position controller is proposed, which leads to a trajectory of motion invariant to load torque and system parameters variations The proposed controller structure consists of nonlinear controller of position, speed and acceleration and optional sliding mode controller, operating with reference model. Simple formulas for controller settings, given in the paper, ensure good robustness even if roughly estimated system parameters are used. Performed experimental investigations verified theoretical results and prove good quality of control.
DOI: 10.6084/m9.figshare.734309
title: Project Acheron OTU Table (tab-delimited)

description: A tab-delimited table that relates the abundance of the OTUs discovered in the analysis of the Project Acheron gut samples to individual samples. QIIME was used to cluster high-quality sequences into 97% identity OTUs using a sub-sampled open-reference clustering procedure. Taxonomic annotations for each OTU were obtained using the RDP classifier.
DOI: 10.6084/m9.figshare.734309.v1
title: Project Acheron OTU Table (tab-delimited)

description: A tab-delimited table that relates the abundance of the OTUs discovered in the analysis of the Project Acheron gut samples to individual samples. QIIME was used to cluster high-quality sequences into 97% identity OTUs using a sub-sampled open-reference clustering procedure. Taxonomic annotations for each OTU were obtained using the RDP classifier.
DOI: 10.6084/m9.figshare.735816.v2
title: A modified approach to the design of robust speed and position control of servo drives

description: In the paper a robust control of position servodrives is analysed. A modified approach to design robust speed and position controller is proposed, which leads to a trajectory of motion invariant to load torque and system parameters variations The proposed controller structure consists of nonlinear controller of position, speed and acceleration and optional sliding mode controller, operating with reference model. Simple formulas for controller settings, given in the paper, ensure good robustness even if roughly estimated system parameters are used. Performed experimental investigations verified theoretical results and prove good quality of control.
DOI: 10.6084/m9.figshare.734285
title: Gaussian Job Archive for C144H146

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.734289
title: Gaussian Job Archive for C10H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.734285.v1
title: Gaussian Job Archive for C144H146

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.734289.v1
title: Gaussian Job Archive for C10H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.734280
title: Gaussian Job Archive for C144H146

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.734291.v1
title: Data Processing and Analysis Software for the Spectrometer/Telescope for Imaging X-rays (STIX) onboard Solar Orbiter

description: Poster presented at the UK National Astronomy Meeting 2013 conference, July 1st - 5th 2013, St. Andrews, Scotland.
DOI: 10.6084/m9.figshare.734277
title: Imperial Workshop on Large Deviations Theory

description: <strong>Workshop on Large Deviations Theory</strong> On Wednesday 10th July 2013, a one day workshop on Large Deviations Theory was held at Imperial College London. It consisted of a series of invited talks by leading researchers and a session of very short talks. The aim was to connect researchers working on different aspects of Large Deviation Theory and those interested in applying these ideas. We covered a wide range of topics, trying to build capacity in this area within the UK. We covered both classical and quantum non-equilibrium systems, and applications both within physics and outside. All material related to this workshop, including some slides from the talks, are in this figshare collection. Funding was provided by the EPSRC NetworkPlus programme on Emergence and Physics far from Equilibrium.
DOI: 10.6084/m9.figshare.734280.v1
title: Gaussian Job Archive for C144H146

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.734274
title: Direct Infusion Data

description: Direct Infusion data collected on the Orbitrap MS
DOI: 10.6084/m9.figshare.734282.v1
title: The formation heights of coronal shock waves using empirical density and Alfvén maps of the solar corona

description: Poster Presented at the National Astronomy Meeting (NAM) 2013 by Pietro Zucca
DOI: 10.6084/m9.figshare.734281.v1
title: The formation heights of coronal shock waves using empirical density and Alfvén maps of the solar corona

description: Presentation at the plenary session of the Community of European Solar Radio Astronomers (CESRA) Workshop 2013 in Prague, given by Pietro Zucca on formation heights of coronal shock waves in the solar atmosphere.
DOI: 10.6084/m9.figshare.734274.v1
title: Direct Infusion Data

description: Direct Infusion data collected on the Orbitrap MS
DOI: 10.6084/m9.figshare.734273
title: LOFAR Imaging and Spectroscopy of Quiet Sun Variability

description: Short presentation given at the CESRA Workshop Meeting 2013 on LOFAR observations of the Sun.
DOI: 10.6084/m9.figshare.734278.v1
title: PSLDoc

description: Prediction of protein subcellular localization (PSL) is important for genome annotation, protein function prediction, and drug discovery. Many computational approaches for PSL prediction based on protein sequences have been proposed in recent years for Gram-negative bacteria. We present PSLDoc, a method based on gapped-dipeptides and probabilistic latent semantic analysis (PLSA) to solve this problem. A protein is considered as a term string composed by gapped-dipeptides, which are defined as any two residues separated by one or more positions. The weighting scheme of gapped-dipeptides is calculated according to a position specific score matrix, which includes sequence evolutionary information. Then, PLSA is applied for feature reduction, and reduced vectors are input to five one-versus-rest support vector machine classifiers. The localization site with the highest probability is assigned as the final prediction. It has been reported that there is a strong correlation between sequence homology and subcellular localization (Nair and Rost, Protein Sci 2002;11:2836–2847; Yu et al., Proteins 2006;64:643–651). To properly evaluate the performance of PSLDoc, a target protein can be classified into low- or high-homology data sets. PSLDoc's overall accuracy of low- and high-homology data sets reaches 86.84% and 98.21%, respectively, and it compares favorably with that of CELLO II (Yu et al., Proteins 2006;64:643–651). In addition, we set a confidence threshold to achieve a high precision at specified levels of recall rates. When the confidence threshold is set at 0.7, PSLDoc achieves 97.89% in precision which is considerably better than that of PSORTb v.2.0 (Gardy et al., Bioinformatics 2005;21:617–623). Our approach demonstrates that the specific feature representation for proteins can be successfully applied to the prediction of protein subcellular localization and improves prediction accuracy. Besides, because of the generality of the representation, our method can be extended to eukaryotic proteomes in the future. The web server of PSLDoc is publicly available at http://bio-cluster.iis.sinica.edu.tw/∼bioapp/PSLDoc/.
DOI: 10.6084/m9.figshare.734281.v2
title: The formation heights of coronal shock waves using empirical density and Alfvén maps of the solar corona

description: Presentation at the plenary session of the Community of European Solar Radio Astronomers (CESRA) Workshop 2013 in Prague, given by Pietro Zucca on formation heights of coronal shock waves in the solar atmosphere.
DOI: 10.6084/m9.figshare.734282.v2
title: The formation heights of coronal shock waves using empirical density and Alfvén maps of the solar corona

description: Poster Presented at the National Astronomy Meeting (NAM) 2013 by Pietro Zucca
DOI: 10.6084/m9.figshare.733637
title: High Quality Project Acheron 16S Reads

description: High quality 16S V4 forward read DNA sequences from each Project Acheron sample.
DOI: 10.6084/m9.figshare.734262
title: CERN@school: William Crookes' Notebook Radiation Measurement Data

description: <strong>Overview</strong> This is a set of data collected with a CERN@school Timepix detector suspended above one of the notebooks belonging to William Crookes. It was collected at the Royal Institution of Great Britain, who hold Crookes' notebooks in their archive, as part of Helen Arney's "BIG SCIENCE" event held on Tuesday 18th June 2013. <strong>Experimental Setup</strong> Please see the included photo, "ri_crookes_notebook_setup.jpg", for an illustration of how the detector and notebook were arranged. The desk seen is that of the Royal Institution's Lecture Theatre. This data was collected before the "BIG SCIENCE" event itself, and did not form part of "QUARKGAZING LIVE". <strong>Detector Settings</strong> 600 frames were obtained with an acquisition time of 1 second (i.e. this data represents a 10 minute sample). The bias voltage of the detector was set to 18V; other settings may be found in the accompanying .dsc files. <strong>Data Analysis</strong> For some example Python code that may be used to analyse this data, please visit the CERN@school GitHub repository linked to below.<br><i>The author would like to thank H. Arney and the Royal Institution of Great Britain for the opportunity to take part in BIG SCIENCE and for access to the notebook. CERN@school was supported by the UK Science and Technology Facilities Council (STFC) via grant numbers ST/J000256/1 and ST/N00101X/1, as well as a Special Award from the Royal Commission for the Exhibition of 1851.</i>
DOI: 10.6084/m9.figshare.734277.v1
title: Imperial Workshop on Large Deviations Theory

description: Workshop on Large Deviations Theory On Wednesday 10th July 2013, a one day workshop on Large Deviations Theory is to be held in London at Imperial College London. This will be a series of invited talks by leading researchers, along with a few short talks and a session of microtalks. The aim is to connect researchers working on different aspects of Large Deviation Theory and those interested in applying these ideas. We hope to cover a wide range of topics and to build capacity within the UK. We plan to cover both classical and quantum non-equilibrium systems, covering applications both within physics and outside. Funding is provided by the EPSRC NetworkPlus programme on Emergence and Physics far from Equilibrium. Files relating to this workshop will be collected here.
DOI: 10.6084/m9.figshare.734273.v2
title: LOFAR Imaging and Spectroscopy of Quiet Sun Variability

description: Short presentation given at the CESRA Workshop Meeting 2013 on LOFAR observations of the Sun.
DOI: 10.6084/m9.figshare.733637.v1
title: High Quality Project Acheron 16S Reads

description: High quality 16S V4 forward read DNA sequences from each Project Acheron sample.
DOI: 10.6084/m9.figshare.734262.v1
title: CERN@school: William Crookes' Notebook Radiation Measurement Data

description: <strong>Overview</strong> This is a set of data collected with a CERN@school Timepix detector suspended above one of the notebooks belonging to William Crookes. It was collected at the Royal Institution of Great Britain, who hold Crookes' notebooks in their archive, as part of Helen Arney's "BIG SCIENCE" event held on Tuesday 18th June 2013. <strong>Experimental Setup</strong> Please see the included photo, "ri_crookes_notebook_setup.jpg", for an illustration of how the detector and notebook were arranged. The desk seen is that of the Royal Institution's Lecture Theatre. This data was collected before the "BIG SCIENCE" event itself, and did not form part of "QUARKGAZING LIVE". <strong>Detector Settings</strong> 600 frames were obtained with an acquisition time of 1 second (i.e. this data represents a 10 minute sample). The bias voltage of the detector was set to 18V; other settings may be found in the accompanying .dsc files. <strong>Data Analysis</strong> For some example Python code that may be used to analyse this data, please visit the CERN@school GitHub repository linked to below.<br><i>The author would like to thank H. Arney and the Royal Institution of Great Britain for the opportunity to take part in BIG SCIENCE and for access to the notebook. CERN@school was supported by the UK Science and Technology Facilities Council (STFC) via grant numbers ST/J000256/1 and ST/N00101X/1, as well as a Special Award from the Royal Commission for the Exhibition of 1851.</i>
DOI: 10.6084/m9.figshare.734273.v1
title: LOFAR Imaging and Spectroscopy of Quiet Sun Variability

description: Short presentation given at the CESRA Workshop Meeting 2013.
DOI: 10.6084/m9.figshare.734282.v3
title: The formation heights of coronal shock waves using empirical density and Alfvén maps of the solar corona

description: Poster Presented at the National Astronomy Meeting (NAM) 2013 by Pietro Zucca
DOI: 10.6084/m9.figshare.733172
title: Project Acheron QIIME Mapping File

description: A QIIME mapping file that relates describes each Project Acheron sample's metadata.
DOI: 10.6084/m9.figshare.733191
title: Project Acheron OTU Table (.biom formatted)

description: A .biom formatted table that relates the abundance of the OTUs discovered in the analysis of the Project Acheron gut samples to individual samples. QIIME was used to cluster high-quality sequences into 97% identity OTUs using a sub-sampled open-reference clustering procedure. Taxonomic annotations for each OTU were obtained using the RDP classifier.
DOI: 10.6084/m9.figshare.734277.v2
title: Imperial Workshop on Large Deviations Theory

description: Workshop on Large Deviations Theory On Wednesday 10th July 2013, a one day workshop on Large Deviations Theory is to be held in London at Imperial College London. This will be a series of invited talks by leading researchers, along with a few short talks and a session of microtalks. The aim is to connect researchers working on different aspects of Large Deviation Theory and those interested in applying these ideas. We hope to cover a wide range of topics and to build capacity within the UK. We plan to cover both classical and quantum non-equilibrium systems, covering applications both within physics and outside. Funding is provided by the EPSRC NetworkPlus programme on Emergence and Physics far from Equilibrium. Files relating to this workshop will be collected here.
DOI: 10.6084/m9.figshare.733133
title: Project Acheron QIIME Mapping File

description: QIIME metadata mapping file for Project Acheron samples
DOI: 10.6084/m9.figshare.733172.v1
title: Project Acheron QIIME Mapping File

description: A QIIME mapping file that relates describes each Project Acheron sample's metadata.
DOI: 10.6084/m9.figshare.734282.v4
title: Shock wave formation heights using 2D density and Alfvén maps of the corona

description: Poster Presented at the National Astronomy Meeting (NAM) 2013 by Pietro Zucca
DOI: 10.6084/m9.figshare.733133.v1
title: Project Acheron QIIME Mapping File

description: QIIME metadata mapping file for Project Acheron samples
DOI: 10.6084/m9.figshare.734277.v3
title: Imperial Workshop on Large Deviations Theory

description: Workshop on Large Deviations Theory On Wednesday 10th July 2013, a one day workshop on Large Deviations Theory is to be held in London at Imperial College London. This will be a series of invited talks by leading researchers, along with a few short talks and a session of microtalks. The aim is to connect researchers working on different aspects of Large Deviation Theory and those interested in applying these ideas. We hope to cover a wide range of topics and to build capacity within the UK. We plan to cover both classical and quantum non-equilibrium systems, covering applications both within physics and outside. Funding is provided by the EPSRC NetworkPlus programme on Emergence and Physics far from Equilibrium. Files relating to this workshop will be collected here.
DOI: 10.6084/m9.figshare.733191.v2
title: Project Acheron OTU Table (.biom formatted)

description: A .biom formatted table that relates the abundance of the OTUs discovered in the analysis of the Project Acheron gut samples to individual samples. QIIME was used to cluster high-quality sequences into 97% identity OTUs using a sub-sampled open-reference clustering procedure. Taxonomic annotations for each OTU were obtained using the RDP classifier.
DOI: 10.6084/m9.figshare.733191.v1
title: Project Acheron OTU Table

description: A .biom formatted table that relates the abundance of the OTUs discovered in the analysis of the Project Acheron gut samples to individual samples. QIIME was used to cluster high-quality sequences into 97% identity OTUs using a sub-sampled open-reference clustering procedure. Taxonomic annotations for each OTU were obtained using the RDP classifier.
DOI: 10.6084/m9.figshare.734277.v4
title: Imperial Workshop on Large Deviations Theory

description: Workshop on Large Deviations Theory On Wednesday 10th July 2013, a one day workshop on Large Deviations Theory is to be held in London at Imperial College London. This will be a series of invited talks by leading researchers, along with a few short talks and a session of microtalks. The aim is to connect researchers working on different aspects of Large Deviation Theory and those interested in applying these ideas. We hope to cover a wide range of topics and to build capacity within the UK. We plan to cover both classical and quantum non-equilibrium systems, covering applications both within physics and outside. Funding is provided by the EPSRC NetworkPlus programme on Emergence and Physics far from Equilibrium. Files relating to this workshop will be collected here.
DOI: 10.6084/m9.figshare.732757
title: Wine, chemistry and genomics

description: This is supplimentary data to a blog post on "Wine, Chemistry and Genomics"
DOI: 10.6084/m9.figshare.732746
title: Bayesian inference of biogeographical histories for hundreds of discrete areas

description: Slides for Snowbird Evolution 2013 on BayArea, a method for inferring biogeographical ranges for many discrete areas.
DOI: 10.6084/m9.figshare.734277.v5
title: Imperial Workshop on Large Deviations Theory

description: Workshop on Large Deviations Theory On Wednesday 10th July 2013, a one day workshop on Large Deviations Theory is to be held in London at Imperial College London. This will be a series of invited talks by leading researchers, along with a few short talks and a session of microtalks. The aim is to connect researchers working on different aspects of Large Deviation Theory and those interested in applying these ideas. We hope to cover a wide range of topics and to build capacity within the UK. We plan to cover both classical and quantum non-equilibrium systems, covering applications both within physics and outside. Funding is provided by the EPSRC NetworkPlus programme on Emergence and Physics far from Equilibrium. Files relating to this workshop will be collected here.
DOI: 10.6084/m9.figshare.732745
title: Continuous trait evolution with fat tails: Lévy processes

description: Slides for Center of Population Genetics presentation at UC Davis 2013.
DOI: 10.6084/m9.figshare.732746.v1
title: Bayesian inference of biogeographical histories for hundreds of discrete areas

description: Slides for Snowbird Evolution 2013 on BayArea, a method for inferring biogeographical ranges for many discrete areas.
DOI: 10.6084/m9.figshare.732739
title: Validation report for PDB: 3ISY

description: This is the first structure in a family of peptidase inhibitors derived from Bacillus subtilis. The structure has an unusual Ig-like fold.
DOI: 10.6084/m9.figshare.732745.v2
title: Continuous trait evolution with fat tails: Lévy processes

description: Slides for Center of Population Genetics presentation at UC Davis 2013.
DOI: 10.6084/m9.figshare.734277.v6
title: Imperial Workshop on Large Deviations Theory

description: Workshop on Large Deviations Theory On Wednesday 10th July 2013, a one day workshop on Large Deviations Theory is to be held in London at Imperial College London. This will be a series of invited talks by leading researchers, along with a few short talks and a session of microtalks. The aim is to connect researchers working on different aspects of Large Deviation Theory and those interested in applying these ideas. We hope to cover a wide range of topics and to build capacity within the UK. We plan to cover both classical and quantum non-equilibrium systems, covering applications both within physics and outside. Funding is provided by the EPSRC NetworkPlus programme on Emergence and Physics far from Equilibrium. Files relating to this workshop will be collected here.
DOI: 10.6084/m9.figshare.732739.v1
title: Validation report for PDB: 3ISY

description: This is the first structure in a family of peptidase inhibitors derived from Bacillus subtilis. The structure has an unusual Ig-like fold.
DOI: 10.6084/m9.figshare.732745.v1
title: Continuous trait evolution with fat tails

description: Slides for Center of Population Genetics presentation at UC Davis 2013.
DOI: 10.6084/m9.figshare.732757.v1
title: Wine, Chemistry and Genomics

description: This is supplimentary data to a blog post on "Wine, Chemistry and Genomics"
DOI: 10.6084/m9.figshare.732757.v3
title: Wine, chemistry and genomics

description: This is supplimentary data to a blog post on "Wine, Chemistry and Genomics"