cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25393573
title: README.txt

description: Data repository for publication:<b>Unpunctual in diversity: The effect of stand species richness on spring phenology of deciduous tree stands varies among species and years</b>by T.Heinecke, P.DeFrenne, K.Verheyen, I.Nijs, E.Matthysen and M.Campioli
DOI: 10.6084/m9.figshare.25393573.v1
title: README.txt

description: Data repository for publication:<b>Unpunctual in diversity: The effect of stand species richness on spring phenology of deciduous tree stands varies among species and years</b>by T.Heinecke, P.DeFrenne, K.Verheyen, I.Nijs, E.Matthysen and M.Campioli
DOI: 10.5281/zenodo.10806735
title: Geographic range maps for Mammal Diversity Database v1.3 taxonomy

description: Update of mammal maps based on the taxonomy of the Mammal diversity database. These maps are different from the original, have been downscaled and are distributed under the R package mdd (github.com/alrobles/mdd).
DOI: 10.6084/m9.figshare.25392619
title: Raw mNGS data for the diagnosis of Angiostrongyliasis cantonensis

description: Raw mNGS (metagenomics next-generation sequencing) data for the diagnosis of Angiostrongyliasis cantonensis
DOI: 10.5281/zenodo.10641454
title: Annex B - Dietary surveys and occurrence data in feed and food submitted to EFSA

description: Occurrence data on PCNs in food and feed and dietary surveys per country and age group available in the EFSA Comprehensive Database, considered in the exposure assessment
description: EU; eng; xlsx; FEEDCO@efsa.europa.eu
DOI: 10.5281/zenodo.10641455
title: Annex B - Dietary surveys and occurrence data in feed and food submitted to EFSA

description: Occurrence data on PCNs in food and feed and dietary surveys per country and age group available in the EFSA Comprehensive Database, considered in the exposure assessment
description: EU; eng; xlsx; FEEDCO@efsa.europa.eu
DOI: 10.6084/m9.figshare.25213541.v2
title: <i>N. oneida</i> genome annotation

description: Genome annotation files for<i> N. oneida</i>
DOI: 10.6084/m9.figshare.24182559.v4
title: Code, data and distribution layers :: peer review VersionKelp forest diversity under projected end-of-century climate change

description: The data and code used in Species Distribution Modelling, the coefficient of correlation of climatic predictors, the cross-validation data splits, the spatial autocorrelation estimates per species, as well as the distribution layers (at a 0.05º resolution) per species and climate scenario.
DOI: 10.6084/m9.figshare.22579798
title: Mrj is a chaperone of the Hsp40 family that regulates Orb2 oligomerization and long-term memory in Drosophila

description: The data is related to the manuscript, Mrj is a chaperone of the Hsp40 family that regulates Orb2 oligomerization and long-term memory in Drosophila. The S1_numerical data file has all the numerical values for the graphs in the manuscript. The S1_raw_images file has all the blots and gel data from the manuscript.<br>
DOI: 10.6084/m9.figshare.22579798.v1
title: Mrj is a chaperone of the Hsp40 family that regulates Orb2 oligomerization and long-term memory in Drosophila

description: The data is related to the manuscript, Mrj is a chaperone of the Hsp40 family that regulates Orb2 oligomerization and long-term memory in Drosophila. The S1_numerical data file has all the numerical values for the graphs in the manuscript. The S1_raw_images file has all the blots and gel data from the manuscript.<br>
DOI: 10.5519/qd.y0vt0xy6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (129 records)
DOI: 10.5281/zenodo.10810191
title: PSSdb-Taxa:  A Pelagic Size Structure database taxa-specific product to support biogeochemical modeling:  First release of taxa-specific products

description: This dataset represents the first release of taxa-specific products from the Pelagic Size Structure database (PSSdb, https://pssdb.net), a scientific project investigating the global particle size distributions measured from multiple pelagic imaging systems. These devices include the Imaging Flow Cytobot (Olson and Sosik 2007), benchtop scanners like the ZooScan (Gorsky et al. 2010), and the Underwater Vision Profiler (Picheral et al. 2010). The data sources originate from Ecotaxa (https://ecotaxa.obs-vlfr.fr/), Ecopart (https://ecopart.obs-vlfr.fr/), and Imaging FlowCytobot dashboards (https://ifcb.caloos.org/dashboard and https://ifcb-data.whoi.edu/dashboard). 

Taxa-specific products were generated after standardization of the automated or manual taxonomic annotations assigned to individual particles following the recent guidelines of Neeley et al. (2021). We used the World Register of Marine Species (WoRMS, https://www.marinespecies.org/)  to assign each particle its final taxonomic annotation, and published group-specific relationships linking biovolume to carbon biomass or dry weight. 

 

The herein taxa-specific products include both taxonomic class-specific data, obtained after grouping all particles in a given taxonomic class§, and broad plankton functional type (PFT) dataƗ. Detrital materials were also separated based on common categories (marine snow, aggregate, fecal pellet) and known biovolume-to-biomass conversion factors (Durkin et al. 2021). Links to the PSSdb code (including the taxonomic and allometric look-up tables) and documentation are available on the PSSdb webpage (https://pssdb.net).

 

 For additional information, please see the PDF documentation available below ...
DOI: 10.5287/ora-rygozwxov
title: Supporting Data for "Thermomechanical characterisation of polyamide 6 over a wide range of rates and temperatures"

description: Supporting data and figures from the paper "Thermomechanical characterisation of polyamide 6 over a wide range of rates and temperatures" published in Polymer in 2024 by Song et al.

Software required:
Origin
Excel
IR Reveal
Image software (e.g. to open tif files)
DOI: 10.6084/m9.figshare.19447735.v1
title: The association of garlic intake and cardiovascular risk factors: A systematic review and meta-analysis

description: Garlic is a common cooking ingredient and used in traditional medicine in Asian countries. There is a growing attention on garlic due to its preventive characteristics in cardiovascular diseases (CVDs). Many studies have reviewed the association between garlic intake and CVDs; however, no consistent conclusions have been drawn. New clinical trials have also been conducted and could contribute to more solid statements. In order to systematically review the reliability of previous studies regarding the implication of garlic in the management of CVDs, we performed in-depth meta-analysis using the most up-to-date randomized clinical trials (RCTs) data with more systematic controls. According to the 22 studies included, the effects of garlic intake on lowering total cholesterol (TC) and low-density lipoprotein (LDL) are more noticeable with lower dosage and longer duration, especially in patients with CVDs. In addition, subgroup analysis indicated that appropriate diet intervention could be an important control factor that should be taken into consideration in any future study designs.
DOI: 10.6084/m9.figshare.19447735
title: The association of garlic intake and cardiovascular risk factors: A systematic review and meta-analysis

description: Garlic is a common cooking ingredient and used in traditional medicine in Asian countries. There is a growing attention on garlic due to its preventive characteristics in cardiovascular diseases (CVDs). Many studies have reviewed the association between garlic intake and CVDs; however, no consistent conclusions have been drawn. New clinical trials have also been conducted and could contribute to more solid statements. In order to systematically review the reliability of previous studies regarding the implication of garlic in the management of CVDs, we performed in-depth meta-analysis using the most up-to-date randomized clinical trials (RCTs) data with more systematic controls. According to the 22 studies included, the effects of garlic intake on lowering total cholesterol (TC) and low-density lipoprotein (LDL) are more noticeable with lower dosage and longer duration, especially in patients with CVDs. In addition, subgroup analysis indicated that appropriate diet intervention could be an important control factor that should be taken into consideration in any future study designs.
DOI: 10.57745/apihvx
title: 2024-data-article-ejss-walteretal-raw-proposals.tab

description: Initial responses from decision-makers who responded to the survey: description of the 786 professional profiles suggested by survey respondents.
Column A: Respondent ID
Column B: Title of the profile in the native language
column C: Title of the profile after translation in english
column D: reclassified title of the profile after grouping of the initial profiles into 60 profiles
column E: originality of the profile (traditional, specialized, innovative)
column F: level of training required for this professional profile
columns G to CK: Is this skill required for the proposed professional profile (yes if required) ?
DOI: 10.57745/vraiq0
title: 2024-data-article-ejss-walteretal-skills-profiles-clusters.tab

description: Results of the statistical analysis of the skills required for each of the 60 professional profiles proposed by respondents and for the 10 profile clusters
Column A: job profile title
Column B: number of respondents who proposed this profile
column C: number of cluster 1 to 10 to which this profile is associated by a correspondence analysis identifying profiles requiring similar skills
Columns D to CD: number of times this skill was considered important by respondents for this professional profile
DOI: 10.25345/c5901zs7z
title: MassIVE MSV000094295 - Differences between human male and female neutrophils in mRNA, translation efficiency, protein, and phosphoprotein profiles
title: Human cells: Males are indicated with m in sample names Females are indicated with f in sample names Samples were unstimulated or stimulated for 5 or 20 minutes, as indicated by 0, 5, or 20 in column titles. 126: Exp. 1 m0 127N: Exp. 1 f0 127C: Exp. 1 m5 128N: Exp. 1 f5 128C: Exp. 1 m20 129N: Exp. 1 f20 129C: Exp. 2 m0 130N: Exp. 2 f0 130C: Exp. 2 m5 131N: Exp. 2 f5 131C: Exp. 2 m20 132N: Exp. 2 f20 132C: Exp. 3 m0 133N: Exp. 3 f0 133C: Exp. 3 m5 134N: Exp. 3 f5 134C: Exp. 3 m20 135N: Exp. 3 f20
DOI: 10.5281/zenodo.10799744
title: Multi-cell type deconvolution using a probabilistic model for single-molecule DNA methylation haplotypes

description: Files required to run deconvolution with CelFIE-ISH and Epistate, in U250 regions from Loyfer et al. 2023, in both "pat" and "epiread" formats.
DOI: 10.5281/zenodo.10799745
title: Multi-cell type deconvolution using a probabilistic model for single-molecule DNA methylation haplotypes

description: Files required to run deconvolution with CelFIE-ISH and Epistate, in U250 regions from Loyfer et al. 2023, in both "pat" and "epiread" formats.
DOI: 10.5281/zenodo.10393447
title: MeanderVegetationDataset

description: data from Finotello et al. "Vegetation enhances curvature-driven dynamics in meandering rivers" (Nat. Comm., 2024)
DOI: 10.5281/zenodo.10393446
title: MeanderVegetationDataset

description: data from Finotello et al. "Vegetation enhances curvature-driven dynamics in meandering rivers" (Nat. Comm., 2024) 

Version 3 of this dataset fixes a bug in the reported values of Meander Radius of Curvature for the Chet River.All the rest of the dataset is unchanged
DOI: 10.5281/zenodo.10657867
title: MeanderVegetationDataset

description: data from Finotello et al. "Vegetation enhances curvature-driven dynamics in meandering rivers" (Nat. Comm., 2024)
DOI: 10.5281/zenodo.10810377
title: MeanderVegetationDataset

description: data from Finotello et al. "Vegetation enhances curvature-driven dynamics in meandering rivers" (Nat. Comm., 2024) 

Version 3 of this dataset fixes a bug in the reported values of Meander Radius of Curvature for the Chet River.All the rest of the dataset is unchanged
DOI: 10.5281/zenodo.10810198
title: Training dataset for label-free microfluidic droplet classification in single cell functional assays
DOI: 10.5281/zenodo.10810199
title: Training dataset for label-free microfluidic droplet classification in single cell functional assays
DOI: 10.5281/zenodo.10809417
title: A Dataset for Corrosion Defects in Pipelines

description: This dataset is helpful for the automated system's navigation part and can help with decision-making by correctly modeling how corrosion spreads in steel pipes in real life. This dataset can also be used with any system that has pipe damage.
DOI: 10.5281/zenodo.10809418
title: A Dataset for Corrosion Defects in Pipelines

description: This dataset is helpful for the automated system's navigation part and can help with decision-making by correctly modeling how corrosion spreads in steel pipes in real life. This dataset can also be used with any system that has pipe damage.
DOI: 10.5281/zenodo.10810388
title: heplersa/USDMdata: Discretized US Drought Data to Support Statistical Modeling

description: Drought is a costly and disruptive natural disaster, with widespread implications for agriculture, wildfire, and urban planning.  We present a novel data set on US drought built to enable computationally efficient spatio-temporal statistical and probabilistic models of drought. We converted drought data obtained from the widely-used US Drought Monitor (USDM) from continuous shape files to a 0.5-degree regular lattice. These data cover the Continental US from 2000 to mid-2022. Known environmental drivers of drought include those obtained from the North American Land Data Assimilation System (NLDAS-2), US Geological Survey (USGS) streamflow data, and National Oceanic and Atmospheric Administration (NOAA) teleconnections data. The USGS streamflow data is itself a new gridded data product, aggregating point-referenced stream discharges from across the US to a common lattice using watersheds to combine nearby stream data. The resulting data set permits statistical and probabilistic modeling of drought with explicit spatial and/or temporal dependence.  Such models could be used to forecast short-range and even season-to-season future droughts with uncertainty, extending the reach and value of the current US Drought Outlook produced by the National Weather Service Climate Prediction Center.
DOI: 10.5281/zenodo.7926117
title: heplersa/USDMdata: Discretized US Drought Data to Support Statistical Modeling

description: Drought is a costly and disruptive natural disaster, with widespread implications for agriculture, wildfire, and urban planning.  We present a novel data set on US drought built to enable computationally efficient spatio-temporal statistical and probabilistic models of drought. We converted drought data obtained from the widely-used US Drought Monitor (USDM) from continuous shape files to a 0.5-degree regular lattice. These data cover the Continental US from 2000 to mid-2022. Known environmental drivers of drought include those obtained from the North American Land Data Assimilation System (NLDAS-2), US Geological Survey (USGS) streamflow data, and National Oceanic and Atmospheric Administration (NOAA) teleconnections data. The USGS streamflow data is itself a new gridded data product, aggregating point-referenced stream discharges from across the US to a common lattice using watersheds to combine nearby stream data. The resulting data set permits statistical and probabilistic modeling of drought with explicit spatial and/or temporal dependence.  Such models could be used to forecast short-range and even season-to-season future droughts with uncertainty, extending the reach and value of the current US Drought Outlook produced by the National Weather Service Climate Prediction Center.
DOI: 10.48328/tudatalib-1380
title: BigMEC - Raw and Post-Processed Data

description: Raw and Post-Processed Data used in the publication "BigMEC: Scalable Service Migration for Mobile Edge Computing" (https://doi.org/10.1109/SEC54971.2022.00018)
DOI: 10.5281/zenodo.10810401
title: The Production of Jordanian Arabic Passive Structures by Children with Autism Spectrum Disorder
DOI: 10.5281/zenodo.10810402
title: The Production of Jordanian Arabic Passive Structures by Children with Autism Spectrum Disorder
DOI: 10.57745/wmnoek
title: RDI-ONF_Couchey_read-meV4.pdf

description: Ce fichier présente le réseau, le site l'expérimentation... This file contains network, site and experiment description
DOI: 10.57745/odpibi
title: RDI-ONF_Couchey_tree_data.tab

description: :unav
DOI: 10.57745/r3iea9
title: RDI-ONF_Couchey_headers.tab

description: :unav
DOI: 10.5519/qd.k5humvcn
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (11 records)
DOI: 10.5519/qd.bdv91tb8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (160 records)
DOI: 10.15151/esrf-es-1449233513
title: MHz beam sweeping serial crystallography for high-throughput pharmaceutical screening

description: Serial X-ray crystallography (SX) at synchrotrons allows structure determinations at nearly physiological temperatures and with time resolution down to the nanosecond range to observe binding of chemical compounds and the course of chemical reactions at atomic resolution in 3D. A current limitation of SX for high-throughput applications are the long data collection times and the large amounts of sample required for such projects. Within this proposal we aim at developing the new method of beam sweeping SX, where the X-ray is scanned over the semi-stationary sample with the use of rotating X-ray mirrors. The proposed beam-sweeping SX approach will allow MHz data collection with a complete dataset to be collected in seconds, enabling rapid structure determination. This will open new opportunities for drug discovery and pharmaceutical compound screening experiments, where much larger compound libraries can be studied at room temperature with less sample consumption than required today
DOI: 10.21942/uva.25394869
title: PHRO Organizational Change Study

description: This study explores the effects of organizational change within the public sector, particularly in high-reliability environments, using a case study from a Dutch air force squadron. It applies conservation of resources theory to suggest that change induces stress and negative feelings, hindering adjustment and effectiveness post-change. Data collected over three surveys showed that negative reactions to change lead to increased work role overload and errors. However, a strong sense of normative commitment to the change—feeling obligated to support it—helped lessen these negative impacts. The research aims to deepen understanding of change processes in high-reliability public organizations and offer insights for both theory and practical implementation.
DOI: 10.5281/zenodo.10659115
title: Data for "Interplay of magnetic order and ferroelasticity  in the spin-orbit coupled antiferromagnet K2ReCl6" published in PRB 109, 094409 (2024)

description: The manuscript of paper is also available on arXiv:2207.11101

The manuscript of this Phys. Rev. B paper is also available on arxiv 2401.03064.
DOI: 10.5281/zenodo.10659116
title: Data for "Interplay of magnetic order and ferroelasticity  in the spin-orbit coupled antiferromagnet K2ReCl6" published in PRB 109, 094409 (2024)

description: The manuscript of paper is also available on arXiv:2207.11101

The manuscript of this Phys. Rev. B paper is also available on arxiv 2401.03064.
DOI: 10.5281/zenodo.10797866
title: The VSMC RNA-seq datasets for "Strategies for Arterial Grafts Optimization at Single Cell Level"

description: This dataset collection contains the human vascular smooth muscle cell (VSMC) bulk RNA-seq data generated in the study Strategies for Arterial Grafts Optimization at Single Cell Level.

Primary human VSMCs (CP-H167, Pricella) were cultured in DM/F12 medium supplemented with FBS, EGF, bFGF, insulin, and penicillin (CM-P167, Pricella). The media was replaced per 48 hours. VSMCs were treated with 100ng/ml MIF (HY-P7387, MCE) for 24 hours in the absence or presence of 50 µMol ISO1 (HY-16692, MCE). The VSMCs with the passage number 3 to 5 were used in the study.

Total RNA was extracted from cultured VSMC under different treatments using RNeasy Mini Kit (74104, Qiagen). A total amount of 1 µg RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each sample. The library preparations were sequenced on an Illumina Novaseq platform and 150 bp paired-end reads were generated. The index of the reference genome was built using Hisat2 v2.0.5. and paired-end clean reads were aligned to the reference genome using Hisat2 v2.0.5.

The sample info for the BAM files and their index files are listed as follows:




SampleCode
Sample Description


C1
VSMC (replicate 1)


C2
VSMC (replicate 2)


C3
VSMC (replicate 3)


M1
VSMC treated with MIF (replicate 1)


M2
VSMC treated with MIF (replicate 2)


M3
VSMC treated with MIF (replicate 3)


M_I1
VSMC treated with MIF and ISO1 (replicate 1)


M_I2
VSMC treated with MIF and ISO1 (replicate 2)


M_I3
VSMC treated with MIF and ISO1 (replicate 3)
DOI: 10.5281/zenodo.10797867
title: The VSMC RNA-seq datasets for "Strategies for Arterial Grafts Optimization at Single Cell Level"

description: This dataset collection contains the human vascular smooth muscle cell (VSMC) bulk RNA-seq data generated in the study Strategies for Arterial Grafts Optimization at Single Cell Level.

Primary human VSMCs (CP-H167, Pricella) were cultured in DM/F12 medium supplemented with FBS, EGF, bFGF, insulin, and penicillin (CM-P167, Pricella). The media was replaced per 48 hours. VSMCs were treated with 100ng/ml MIF (HY-P7387, MCE) for 24 hours in the absence or presence of 50 µMol ISO1 (HY-16692, MCE). The VSMCs with the passage number 3 to 5 were used in the study.

Total RNA was extracted from cultured VSMC under different treatments using RNeasy Mini Kit (74104, Qiagen). A total amount of 1 µg RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each sample. The library preparations were sequenced on an Illumina Novaseq platform and 150 bp paired-end reads were generated. The index of the reference genome was built using Hisat2 v2.0.5. and paired-end clean reads were aligned to the reference genome using Hisat2 v2.0.5.

The sample info for the BAM files and their index files are listed as follows:




SampleCode
Sample Description


C1
VSMC (replicate 1)


C2
VSMC (replicate 2)


C3
VSMC (replicate 3)


M1
VSMC treated with MIF (replicate 1)


M2
VSMC treated with MIF (replicate 2)


M3
VSMC treated with MIF (replicate 3)


M_I1
VSMC treated with MIF and ISO1 (replicate 1)


M_I2
VSMC treated with MIF and ISO1 (replicate 2)


M_I3
VSMC treated with MIF and ISO1 (replicate 3)
DOI: 10.5281/zenodo.10208175
title: Model hydrodynamic outputs for running different Lagrangian particle tracking packages

description: The GitHub repository that uses this dataset is https://github.com/Jilian0717/LPT_intercomparison/tree/main
DOI: 10.5281/zenodo.10223144
title: Model hydrodynamic outputs and example codes for running different Lagrangian particle tracking packages

description: The GitHub repository that uses this dataset is https://github.com/Jilian0717/LPT_intercomparison/tree/main
DOI: 10.5281/zenodo.10810102
title: Model hydrodynamic outputs and example codes for running different Lagrangian particle tracking packages
DOI: 10.5281/zenodo.10208174
title: Model hydrodynamic outputs and example codes for running different Lagrangian particle tracking packages

description: The GitHub repository that uses this dataset is https://github.com/Jilian0717/LPT_intercomparison/tree/main