cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.967298
title: Mortality rate of cultured Gigantidas childressi in deep-sea mussel culture in 2019

description: Mortality/survival of animals in nutrition treatments 'm' (methane), 'a+m' (algae and methane) and 'a' (algae), that were not sacrificed for other analyses (initial animal numbers: 9-10).
description: treatment ('A' = algae, 'AM' = algae and methane, 'M' = methane)sum_mussels: initial number of mussels that were not sacrificed for other measurements
DOI: 10.1594/pangaea.882601
title: Porewater geochemistry of two shallow-water hydrothermal vents off Dominica Island, Lesser Antilles
DOI: 10.1594/pangaea.967303
title: Growth of cultured Gigantidas Childressi after 21 months in culture

description: G. childressi shell length and shell thickness growth after 21 months in culture, as deduced from calcein staining marks using a Leica M165 FC stereo microscope.
DOI: 10.1594/pangaea.826481
title: Reflectance spectroscopy and colorimetry from IODP Hole 329-U1367F

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.967329
title: Gas consumption of cultures Gigantidas childressi

description: Gas consumption of two batches (1 and 2) of cultured G. childressi. Batch 2 mussels were cultured under 3 different nutrition regimes (CH4, algae + CH4, only algae). Methane consumption of batch 2 mussels was measured twice, in 2017 and 2019.
DOI: 10.1594/pangaea.494665
title: Physical oceanography during cruise K5812_1995
DOI: 10.1594/pangaea.967330
title: Valve gape activity of cultured Gigantidas childresse: individual data

description: Valve gape activity of cultured G. childressi mussels from different nutritional treatments (CH4: 'M', algae + CH4: 'MA', algae: 'A') in response to mean steps (including both, step-wise increasing and decreasing methane levels) of seawater CH4 concentrations based on time lapse image analysis.
DOI: 10.1594/pangaea.967331
title: Valve gape activity of cultured Gigantidas childresse: mean data

description: Valve gape activity of cultured G. childressi mussels from different nutritional treatments (CH4: 'M', algae + CH4: 'MA', algae: 'A') at changing seawater CH4 concentrations. Activities assessed based on time lapse image analysis.
DOI: 10.1594/pangaea.967332
title: Clearance rates of Gigantidas childressi filtering phytoplankton

description: Clearance rates of two batches (1 and 2) of cultured G. childressi mussels filtering phytoplankton. Batch 1 mussels ('small': 51 ± 3 mm SD, 'large': 77 ± 4 mm SD) received either Rhodomonas or Nannochloropsis cells. Batch 2 mussels from were cultured under different nutritional treatments (CH4: 'M', algae + CH4: MA', only algae: 'A'). The measurement of clearance rates of batch 2 G. childressi cultured in the 'A' treatment (without CH4 supply) was conducted twice: once while mussels were placed in CH4-enriched seawater, and, subsequently, once without CH4.
DOI: 10.1594/pangaea.967333
title: Stable isotopes of cultured Gigantidas childressi in deep-sea mussel culture

description: Stable isotopes (a: δ15N, b: δ13C) of G. childressi that experienced different nutritional regimes (CH4: 'M', algae + CH4: MA', only algae: 'A') in our culture. As reference, t0 animals were sampled upon arrival at GEOMAR after spending 2 months post-capture at Charles Fisher's 'deep-sea lab' aquarium system, Pennsylvania State University
DOI: 10.1594/pangaea.678317
title: Abundance of Argopecten purpuratus larvae off Atenas, Paracas Bay, 1985, Peru
DOI: 10.1594/pangaea.809667
title: (Table 3) NRM intensity and inclination at DSDP Hole 77-538A added to the study post-cruise
DOI: 10.1594/pangaea.967334
title: CH4 concentrations in the culture system during long-term culture of Gigantidas childressi

description: The seawater in the G. childressi culture system was enriched with methane by injection of methane-enriched air from an air-methane gas mixing device. methane concentrations were monitored using a CONTROS HydroC® CH₄ sensor in the filter tank of the culture system.
DOI: 10.1594/pangaea.883791
title: Proteome data of Amphistegina gibbosa

description: The proliferation of key marine ecological engineers and carbonate producers often relies on their association with photosymbiotic algae. Evaluating stress responses of these organisms is important to predict their fate under future climate projections. Physiological approaches are limited in their ability to resolve the involved molecular mechanisms and attribute stress effects to the host or symbiont, while probing and partitioning of proteins cannot be applied in organisms where the host and symbiont are small and cannot be physically separated. Here we apply a label-free quantitative proteomics approach to detect changes of proteome composition in the diatom-bearing benthic foraminifera Amphistegina gibbosa experimentally exposed to three thermal-stress scenarios. We developed a workflow for protein extraction from less than ten specimens and simultaneously analysed host and symbiont proteomes. Despite little genomic data for the host, 1,618 proteins could be partially assembled and assigned. The proteomes revealed identical pattern of stress response among stress scenarios as that indicated by physiological measurements, but allowed identification of compartment-specific stress reactions. In the symbiont, stress-response and proteolysis-related proteins were up regulated while photosynthesis-related proteins declined. In contrast, host homeostasis was maintained through chaperone up-regulation associated with elevated proteosynthesis and proteolysis, and the host metabolism shifted to heterotrophy.
description: Proteins identified in host foraminifera or photosymbionts with the assigned compartments (Table S3).Gene ontology annotations of proteins that were identified as regulated, i.e. showed significant changes in abundance in response to thermal stress treatments (Table S4).
description: Supplement to: Stuhr, Marleen; Blank-Landeshammer, Bernhard; Reymond, Claire E; Kollipara, Laxmikanth; Sickmann, Albert; Kucera, Michal; Westphal, Hildegard (2018): Disentangling thermal stress responses in a reef-calcifier and its photosymbionts by shotgun proteomics. Scientific Reports, 8(1)
DOI: 10.1594/pangaea.967335
title: Total weight and wet weight of cultured Gigantidas childressi in deep-sea mussel culture

description: Cultured G. childressi wet weight – total weight relationship measured for Ci measurements in 2016
DOI: 10.1594/pangaea.748806
title: Meteorological observations during EGMOND cruise from Batavia to Nieuwediep started at 1839-02-27
DOI: 10.1594/pangaea.809679
title: (Table 1) Grain-size analyses in silty clay at DSDP Hole 77-536
DOI: 10.1594/pangaea.829153
title: Gamma ray attenuation bulk density from IODP Hole 340-U1401A

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.759938
title: (Table 2) Direction of characteristic magnetization across the K/T boundary in ODP Hole 122-761C
DOI: 10.1594/pangaea.475952
title: Geochemistry of sediment core MH_9SK from the Indian Ocean (Appendix)
DOI: 10.1594/pangaea.889179
title: Documentation of sediment core GeoB17705-1
DOI: 10.1594/pangaea.722809
title: Ultra-violet measurements from station Rock Springs (2008-09)

description: UV-b values were originally given in mW/m² and then erroneously imported in W/m² using the same numbers. The numbers have been corrected (divided by 1000) on 2017-02-03.
DOI: 10.1594/pangaea.475944
title: Geochemistry of sediment core MH_36 from the Indian Ocean (Appendix)
DOI: 10.1594/pangaea.673924
title: Radiosonde measurements from station Boulder (1993-05)

description: Start location: Denver, Colorado, USA; Distance from radiation site: 30 km
DOI: 10.1594/pangaea.475958
title: Geochemistry of sediment core MH_23SK from the Indian Ocean (Appendix)
DOI: 10.1594/pangaea.475983
title: Geochemistry of sediment core M1_MULT221 from the Indian Ocean (Appendix)
DOI: 10.1594/pangaea.745037
title: Physical oceanography during HEINCKE cruise HE322
DOI: 10.1594/pangaea.887304
title: Hydrographic sensor and bottle data collected during an August 2015 cruise to Sermilik Fjord, East Greenland

description: This dataset contains hydrographic observations from Sermilik Fjord in SE Greenland, collected in August 2015 aboard the RV Adolf Jensen, including discrete data derived from water sample analyses and corresponding CTD sensor data. CTD data were collected using a Seabird 25Plus Sealogger equipped with a SBE 43 dissolved oxygen sensor, a Satlantic PAR LOG sensor, and a Wetlabs / Seabird ECO Triplet (chlorophyll-a and CDOM fluorescence, as well as backscattering at 700 nm). Discrete samples for nitrate, phosphate, silicate, and ammonium, were filtered through a sterile 0.22 µM Sterivex filter using standard protocols and kept frozen at -20 °C for later analysis at the Woods Hole Oceanographic Institution Nutrient Analytical Facility. Dissolved nutrient concentrations were quantified using a SEAL AA3 four-channel segmented flow analyzer.
DOI: 10.1594/pangaea.498520
title: Physical oceanography from BT during cruise U90PO00079B_1960
DOI: 10.1594/pangaea.724105
title: Other measurements at 10 m from station Southern Great Plains (2002-02)

description: Version 2, 2009-07-07
DOI: 10.1594/pangaea.722625
title: (Appendix 1) Temperature measurements of CORK installation on ODP Hole 168-1025C

description: Crustal age: 1.237 Ma; Cased hole opened into basement: 97-07-27 19:00; End of drilling and circulation: 97-07-28 17:30; CORK Installation: 97-07-30 13:35; First data recovery: 97-10-12 17:00; Second data recovery: 98-06-28 04:00; Third data recovery: 99-09-15 20:00; Logger replaced: 00-08-12 20:00 (no data from 99-09 to 00-08); Current status: Operational (pressure only); Seafloor depth: 2606.2 m; Basement depth: 101.0 m; Casing depth: 102.0 m; Fill depth: 134.8 m; Total depth: 147.8 m; Pressure sensor offset (borehole - seafloor): 32 kPa; Initial formation-fluid pressure: +6 kPa; Equilibrium formation pressure: +3 kPa
DOI: 10.1594/pangaea.889189
title: Documentation of sediment core GeoB17716-1
DOI: 10.1594/pangaea.889190
title: Documentation of sediment core GeoB17717-1
DOI: 10.1594/pangaea.889193
title: Documentation of sediment core GeoB17720-2
DOI: 10.1594/pangaea.917428
title: 1-Hz PPP displacements at GEONET station 3078 during the 2011 Tohoku Mw9.0 earthquake
DOI: 10.1594/pangaea.917424
title: 1-Hz PPP displacements at GEONET station 3074 during the 2011 Tohoku Mw9.0 earthquake
DOI: 10.1594/pangaea.930981
title: Sand-based storminess proxies from a coastal peatland Struban Bog, Outer Hebrides, Scotland

description: Storminess in northern Europe varies over annual and decadal timescales, however little is known about how storminess varies over centennial and millennial timescales. In this project two storminess reconstructions were developed from the Outer Hebrides, Scotland.Peat cores were sampled using a Russian corer from a peatbog Struban Bog (57°33'35''N; 7°20'45''W). Samples of equal volume (5 cm3) from 1 cm contiguous intervals along the core were processed using the loss-on-ignition method (Heiri et al. 2001), leaving the ignition residue, which was sieved to establish the weight of the 120-180 and &gt;180 micron sand fractions. The ignition residue and sand fractions reflect the past amount of sand deposition, which can be used as a proxies for storminess. Chronological constraints were provided by AMS radiocarbon dates; with 6 dates. The reconstruction from Struban Bog spans the period 4200-180 cal yrs BP.
DOI: 10.1594/pangaea.931005
title: Sand-based storminess proxies from Pedrido Bog, Galicia, Spain

description: Over annual to decadal timescales changes in the storm track influences regional climate in Europe, however little is known about how the storm track varies over centennial and millennial timescales. We here present two datasets. The first is a reconstruction of storminess from northwest Spain spanning the period 4600-0 cal yrs BP, which was developed by measuring aeolian sand deposits in a peat core from Pedrido Bog, Galicia, Spain. Samples of equal volume (5 cm3) from 1 cm contiguous intervals along the core were processed using the loss-on-ignition method (Heiri et al. 2001), leaving the ignition residue, which was sieved to establish the weight of the 120-180 and &gt;180 micron sand fractions. The ignition residue and sand fractions reflect the past amount of sand deposition, which can be used as proxies for storminess. The second dataset is a North-South storm track index reconstruction for western Europe spanning the period 3940-120 cal yrs BP. To create the storm track index, the above described storminess record from Spain was subtracted from a storminess record from Scotland, derived by averaging the results of two storminess reconstructions from the Outer Hebrides, Scotland (Orme et al., 2016). Each record was sampled to the same 20 year temporal resolution and standardised prior to this.
DOI: 10.1594/pangaea.484912
title: Sea surface temperature data during cruise Hvidfisken_18890424

description: Values of air and water temperature are corrected if corrections are given. If correction value is missing, it is taken 0.0. If correction is given for a range of temperature, particular value is computed by linear interpolation.
DOI: 10.1594/pangaea.552461
title: Physical oceanography at stations E1 and E2, Atenas, Independence Bay, Peru (2006)
DOI: 10.1594/pangaea.744449
title: Physical oceanography during West-Hinder cruise West-Hinder72 to the North Sea
DOI: 10.1594/pangaea.817362
title: (Figure 4) Distribution of upper Eocene-lower Oligocene sponge spicules from DSDP Hole 71-513A

description: Abundance: A = abundant, C = common, F = few, R = rare, - = absent.
DOI: 10.1594/pangaea.931006
title: North-south storm track index reconstruction for western Europe from Pedrido Bog, Galicia, Spain

description: To create the storm track index, the above described storminess record from Spain was subtracted from a storminess record from Scotland, derived by averaging the results of two storminess reconstructions from the Outer Hebrides, Scotland (Orme et al., 2016). Each record was sampled to the same 20 year temporal resolution and standardised prior to this.
DOI: 10.1594/pangaea.808936
title: (Table 2) Compressional wave velocities at different pressures at DSDP Hole 45-395A
DOI: 10.1594/pangaea.882598
title: Temperature of two marine shallow-water hydrothermal systems off Dominica, Lesser Antilles
DOI: 10.1594/pangaea.889191
title: Documentation of sediment core GeoB17718-3
DOI: 10.1594/pangaea.826349
title: Reflectance spectroscopy and colorimetry from IODP Hole 330-U1377A

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.809066
title: (Appendix - Table 1) Carbon and pyrolysis assay characteristics at DSDP Site 79-544
DOI: 10.1594/pangaea.828433
title: Gamma ray attenuation bulk density from IODP Hole 323-U1344C

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.722822
title: Other measurements at 10 m from station Rock Springs (2009-01)
DOI: 10.1594/pangaea.808938
title: (Table 3) Elastic constants and shear wave velocities at DSDP Hole 45-395A
DOI: 10.1594/pangaea.742002
title: Meteorological synoptical observations from station Tamanrasset (2003-01)
DOI: 10.1594/pangaea.499330
title: Physical oceanography from BT during cruise U90XX00444B_1973
DOI: 10.1594/pangaea.663488
title: Oceanography at CTD/bottle station IFREMER_0328
DOI: 10.1594/pangaea.748095
title: Hydrography on standard level calculated from water bottle samples of RV Foton in 1974
DOI: 10.1594/pangaea.499311
title: Physical oceanography from BT during cruise U90XX00317B_1971
DOI: 10.1594/pangaea.836950
title: Properties of seawater from a Sea-Bird TSG temperature and conductivity sensor mounted on the continuous surface water sampling system during campaign TARA_20100309Z of the Tara Oceans expedition 2009-2013

description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data publication contains measurements from the Continuous Surface Sampling System [CSSS] made during one campaign of the Tara Oceans Expedition. Water was pumped at the front of the vessel from ~2m depth, then de-bubbled and circulated to a Sea-Bird TSG temperature and conductivity sensor. System maintenance (instrument cleaning, flushing) was done approximately once a week and in port between successive legs. All data were stamped with a GPS.
DOI: 10.1594/pangaea.694836
title: Concentrations of chlorophyll-alpha in water of the Aegean Sea at Station FEBR-1999-IR62

description: Samples from 2 l of sea water were filtered through polycarbonate Millipore filters. The filters were kept deep frozen and analyzed according to Holm-Hansen et al. (Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., Strickland, J.D.H. 1965. Fluorometric determination of chlorophyll. Journal du Conseil Permanent International Pour l'Exploration de la Mer 30, 3-15).
DOI: 10.1594/pangaea.755993
title: (Table 3g) Mercury concentrations in waters of the Mediterranean Sea at Station VB30-299
DOI: 10.1594/pangaea.828703
title: Moisture and density (MAD) measured on IODP Hole 336-U1384A

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.926020
title: Radiocarbon age determination of sediment core GeoB8470-4
DOI: 10.1594/pangaea.835894
title: Pollen profile RHODOPI, Elatia-Rhodopes, Greece

description: This dataset was archived on 2014-09-12 from the EPD database (http://www.europeanpollendatabase.net).
DOI: 10.1594/pangaea.905243
title: NavCleaner (OFOS Edition) for processing raw Posidonia USBL datagrams

description: The NavCleaner (OFOS Edition) is a program that filters, smooths and interpolates USBL navigation data. The NavCleaner (OFOS Edition) is optimised to process the navigation tracks of the AWI OFOS and OFOBS instruments but it can be used to process Posidonia USBL data from other instruments as well. As input it only requires a text file containing raw USBL datagrams. The program outputs comma-separated files containing the filtered, smoothed and 1 Hz interpolated navigation timeseries (both geographic coordinates and UTM/UPS coordinates). All calculations are done internally on projected coordinates using the most relevant WGS84 UTM/UPS zone in order to minimize errors. If used with the OFOS / OFOBS platforms, the NavCleaner (OFOS Edition) can optionally read and interpolate the altimeter data from the photos' EXIF metadata, and compute the coordinates for every photo as well as for every observations in the dive report (Excel format). A dive report template is provided, which can also be used with other platforms.
DOI: 10.1594/pangaea.683535
title: (Table 4) Distribution of Oligocene to Miocene radiolarians at DSDP Site 7-64_Site of the Ontong Java Plateau, Pacific Ocean

description: Species abundance: C = common, F = few, R = rare, + = single specimen, ? = dubious identification, - = searched for and not found
DOI: 10.1594/pangaea.744949
title: (Table 6) Chemical composition and zonal distribution of Cu minerals in a pipe from the Triple Chimney mound, Broken Spur hydrothermal field
DOI: 10.1594/pangaea.782386
title: Meteorological synoptical observations from station Tamanrasset (2012-04)
DOI: 10.1594/pangaea.748338
title: Hydrography on standard level calculated from water bottle samples of RV Muksun in 1964
DOI: 10.1594/pangaea.896869
title: Carbon, nitrogen and stable carbon isotopes in the sediment core E46 from Eastern Segara Anakan, Indonesia

description: What was sampled: Mangrove sedimentParameter measured and method:1. Organic carbon (Corg), analyzed using elemental analyzer (Eurovector E3000 Elemental Analyzer)2. Total nitrogen (N), analyzed using elemental analyzer (Eurovector E3000 Elemental Analyzer)3. Stable carbon isotope composition (δ13Corg), analyzed using Thermo Finnigan Delta plus mass spectrometer coupled to a Flash EA1112 Elemental AnalyzerWhere was sampled: Eastern Segara Anakan Lagoon, Central Java, IndonesiaWhen was sampled: Sediment samples were taken in December 2016.How it was sampled: Mangrove sediments were collected using a 1 m long semi-cylindrical auger. Sediments were taken down to 1 m depth, and were sampled in 5 cm interval.
DOI: 10.1594/pangaea.896870
title: Carbon, nitrogen and stable carbon isotopes in the sediment core E47 from Eastern Segara Anakan, Indonesia

description: What was sampled: Mangrove sedimentParameter measured and method:1. Organic carbon (Corg), analyzed using elemental analyzer (Eurovector E3000 Elemental Analyzer)2. Total nitrogen (N), analyzed using elemental analyzer (Eurovector E3000 Elemental Analyzer)3. Stable carbon isotope composition (δ13Corg), analyzed using Thermo Finnigan Delta plus mass spectrometer coupled to a Flash EA1112 Elemental AnalyzerWhere was sampled: Eastern Segara Anakan Lagoon, Central Java, IndonesiaWhen was sampled: Sediment samples were taken in December 2016.How it was sampled: Mangrove sediments were collected using a 1 m long semi-cylindrical auger. Sediments were taken down to 1 m depth, and were sampled in 5 cm interval.
DOI: 10.1594/pangaea.845538
title: (Table S1) Nannofossil relative abundance and flux for DSDP Sites 72-516
DOI: 10.1594/pangaea.896866
title: Carbon, nitrogen and stable carbon isotopes in the sediment core C49 from Central Segara Anakan, Indonesia

description: What was sampled: Mangrove sedimentParameter measured and method:1. Organic carbon (Corg), analyzed using elemental analyzer (Eurovector E3000 Elemental Analyzer)2. Total nitrogen (N), analyzed using elemental analyzer (Eurovector E3000 Elemental Analyzer)3. Stable carbon isotope composition (δ13Corg), analyzed using Thermo Finnigan Delta plus mass spectrometer coupled to a Flash EA1112 Elemental AnalyzerWhere was sampled: Central Segara Anakan Lagoon, Central Java, IndonesiaWhen was sampled: Sediment samples were taken in November 2016.How it was sampled: Mangrove sediments were collected using a 1 m long semi-cylindrical auger. Sediments were taken down to 1 m depth, and were sampled in 5 cm interval.
DOI: 10.1594/pangaea.932978
title: Porewater nitrate of sediment core SO240_53-1
DOI: 10.1594/pangaea.663575
title: Oceanography at CTD/bottle station IFREMER_0415
DOI: 10.1594/pangaea.910966
title: Continuous thermosalinograph oceanography along Heincke cruise track HE542
DOI: 10.1594/pangaea.722335
title: Ultra-violet measurements from station Goodwin Creek (2000-11)

description: Version 2, 2009-06-24. UV-b values were originally given in mW/m² and then erroneously imported in W/m² using the same numbers. The numbers have been corrected (divided by 1000) on 2017-02-03.
DOI: 10.1594/pangaea.694336
title: Nutrient concentrations in water samples from the Aegean Sea at Station SEPT-1998-IR96
DOI: 10.1594/pangaea.723187
title: Description of profile 7038-217
DOI: 10.1594/pangaea.744510
title: (Table 2) Chemical composition of the ore part of Fe-Mn nodules and crusts at the section from the Wake Atoll to the Hawaiian Islands
DOI: 10.1594/pangaea.809491
title: (Figure 1) Distribution of dinoflagellate cysts in the mid-Cretaceous of DSDP Hole 79-545

description: Species abundance: D = dominant (&gt;100 specimens), A = abundant (51-100), C = common (21-50), F = few (4-20), R = rare (1-3), - = absent.
DOI: 10.1594/pangaea.809386
title: (Table 1) Environmental parameters measured at collared and brown lemming winter nests and at random sites, Bylot Island

description: Two spatial scales were investigated, namely, landscape (random-1) and local (random-2) scales (see Material & Methods for details).
DOI: 10.1594/pangaea.828434
title: Gamma ray attenuation bulk density from IODP Hole 323-U1344D

description: Geocode = Depth CSF-A (m)
DOI: 10.1594/pangaea.723267
title: Description of profile 7140-201
DOI: 10.1594/pangaea.824904
title: (Table S1) Carbon and CaCO3 content in sediment core KNR166-2_26