cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vt335u
title: Occurrence Download

description: A dataset containing 682 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Askellia flexuosa (Ledeb.) W.A.Weber"
 ]
}

 The dataset includes 682 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029843-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/examiner-c44-28881
title: Christmas Service in Saint James Episcopal Church, 1951

description: 2 images. Christmas Service in Saint James [Episcopal Church] Cathedral ...Episcopal, 25 December 1951. Procession; Choir singing.
DOI: 10.15468/dl.wqfita
title: Occurrence Download

description: A dataset containing 434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balanus trigonus Darwin, 1854",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen"
 ]
 }
 ]
}

 The dataset includes 434 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040556-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-07.2023858/2358333
title: Data for EMSL Project 48666 from July 2020
DOI: 10.15468/dl.dp6agy
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Troides aeacus (Felder & Felder, 1860)",
 "Year 2014-2024"
 ]
}

 The dataset includes 109 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038105-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfgyza
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceropegia lucida Wall."
 ]
}

 The dataset includes 81 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089810-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/examiner-c44-9634
title: Gift chicken, 1951

description: 4 images. Gift chicken, June 20, 1951. Philip Clar -- 8 1/2 years (with pet Easter chick "Cola").
DOI: 10.15468/dl.5m48qt
title: Occurrence Download

description: A dataset containing 12158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bombus melanopygus Nylander, 1848",
 "Country is one of (United States of America, Canada, Mexico)",
 "HasCoordinate is true",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 12158 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006579-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-07.2023781/2358334
title: Data for EMSL Project 48666 from July 2020
DOI: 10.15468/dl.lih1qz
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limnoria lignorum (Rathke, 1799)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen"
 ]
 }
 ]
}

 The dataset includes 58 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040559-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/examiner-c44-6919
title: Housewives strike against high price of meat, 1951

description: 2 images. Housewives strike against high price of meat, May 1, 1951. Susan Smock; Mrs. Sally Smock; Mrs. Jerry Devor; Mrs. Virginia Conn; Mrs. Mona Conn.; More descriptive information with originals.
DOI: 10.15468/dl.ug7ntw
title: Occurrence Download

description: A dataset containing 6420 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acrocephalus schoenobaenus (Linnaeus, 1758)",
 "DatasetKey is Observation.org, Nature data from around the World",
 "Country is one of (Germany, France, Spain, Portugal, Denmark, Austria, Italy, Switzerland, Greece, Poland, Hungary, Slovenia, Sweden, Norway, Slovakia, Montenegro, Croatia, North Macedonia, Serbia, Iceland, Ireland, United Kingdom of Great Britain and Northern Ireland, Albania, Bosnia and Herzegovina, Bulgaria, Finland)"
 ]
}

 The dataset includes 6420 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006589-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pa5khs
title: Occurrence Download

description: A dataset containing 2752 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galium verticillatum Danthoine ex Lam."
 ]
}

 The dataset includes 2752 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013496-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48539/hbm542.nnzp.924
title: OMAP-9: Organ Mapping Antibody Panel (OMAP) for Multiplexed Antibody-Based Imaging of Human Kidney with CODEX, v1.1

description: OMAP-9 was designed for CODEX multiplex antibody-based imaging of fresh frozen human kidney tissue<br>(dx.doi.org/10.17504/protocols.io.8epv5jdbnl1b/v1). The panel contains 41 antibodies and the nuclear marker DAPI for<br>image alignment and nuclear segmentation. OMAP-9 provides a spatial context for all anatomical structures and most<br>cell types present in the ASCT+B kidney table v1.1. This OMAP expands on OMAP-3 (10.48539/HBM373.TBKP.375), an 18-plex<br>kidney CODEX panel, by including additional markers for granular phenotyping of key cells in the kidney such as<br>structural cells (Podocalyxin, LRP2, E-cadherin, SLC12A3, Na/K ATPase and Cytokeratin 8), immune cells including T<br>cells (CD3D, CD4, CD45RO, CD8, FOXP3, GATA-3), myeloid cells (CD11c, CD68, CD206, HLA-DR, Myeloperoxidase), and B<br>cells (CD20). Antibodies directed against injury markers (KIM1, IGFBP7, Osteopontin, PLSCR1, VCAM1, MCP1, phosphor<br>c-JUN, phosphor MLKL, Fibronectin, Collagen IV, LC3, Cystatin 3, and PROM1) allows profiling of kidney disease<br>progression, prognosis, and repair. The following markers utilize different antibody clones than OMAP-3: vimentin,<br>beta-catenin, and uromodulin. Mesangial cells present in the glomerulus are not targeted in the existing panel due to<br>the absence of suitable antibodies compatible with the methodology. Additional details on sample preparation and CODEX<br>multiplexing workflow can be found on Protocols.io (dx.doi.org/10.17504/protocols.io.8epv5jdbnl1b/v1). Correction to<br>update to authors list and spelling of names appears in OMAP-9 v1.1.
DOI: 10.15468/dl.jgczs7
title: Occurrence Download

description: A dataset containing 5871 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platanus orientalis"
 ]
}

 The dataset includes 5871 records from 406 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053598-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evgtny
title: Occurrence Download

description: A dataset containing 8854 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((66.25633 36.69978,101.322 36.69978,101.322 51.78936,66.25633 51.78936,66.25633 36.69978))",
 "TaxonKey is Artemisia"
 ]
}

 The dataset includes 8854 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053597-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48539/hbm373.hqcb.363
title: Organ Mapping Antibody Panel (OMAP) for Multiplexed Antibody-Based Imaging of Human Intestine with CODEX, v1.0

description: The OMAP Intestine panel was designed for CODEX (CO Detection by IndEXing) of fresh frozen human intestine. The panel<br>contains 54 antibodies and the nuclear marker Hoechst for image alignment and nuclear segmentation. This provides<br>spatial context for all anatomical structures and most cell types present in the [ASCT+B intestine<br>table,v1.1](https://doi.org/10.48539/HBM325.NZPB.589). In general the panel was aimed to get a broad representation of<br>cell types found in the intestine spanning stromal, immune, and epithelial origins. All antibodies are custom<br>conjugated in house with oligo bar codes (no lot number available).
DOI: 10.48539/hbm244.tnjg.649
title: OMAP-2 Organ Mapping Antibody Panel (OMAP) for Multiplexed Antibody-Based Imaging of Human Intestines with CODEX, v1.3

description: OMAP-2 was designed for CODEX (CO Detection by IndEXing) imaging of fresh frozen human intestine<br>(https://doi.org/10.1038/s41596-021-00556-8, https://doi.org/10.1002/eji.202048891). The panel contains 54 antibodies<br>and the nuclear marker Hoechst for image alignment and nuclear segmentation. This panel provides spatial context for<br>all anatomical structures and most cell types present in the [ASCT+B intestine<br>table,v1.1](https://doi.org/10.48539/HBM325.NZPB.589). However, this panel does not include a marker for tuft cells, M<br>cells, and subsets of major cell types that are known to be present in the intestine (e.g., neuroendocrine cell<br>lineages, distinctions between alpha/beta and gamma/delta T cells, and IgA+ plasma cells). In general the panel was<br>aimed to provide a broad representation of cell types found in the intestine spanning stromal, immune, and epithelial<br>origins and could be used across disease settings of the intestine. Data from this panel has been analyzed as<br>described previously (https://doi.org/10.3389/fimmu.2021.727626, https://doi.org/10.1101/2021.11.25.469203). All<br>antibodies are custom conjugated in house with oligonucleotide barcodes (no lot number available) and run using CODEX<br>imaging per previous protocols (https://doi.org/10.1038/s41596-021-00556-8). Representative datasets using this OMAP<br>can be found here: https://doi.org/10.5061/dryad.76hdr7t1p; https://doi.org/10.5061/dryad.gmsbcc2sq. OMAP-2 v1.3<br>corrects the rrid listed for CDX2 to AB_2864405 and the protein target detected by panCytokeratin cloneID AE-1/AE-3<br>Biolegend 914204 from KRT17 to all of these KRT1, KRT2, KRT3, KRT4, KRT5, KRT7, KRT8, KRT10, KRT14, KRT15, KRT16,<br>KRT19.
DOI: 10.48539/hbm577.sbhh.454
title: OMAP-4  Organ Mapping Antibody Panel (OMAP) for Multiplexed Antibody-Based Imaging of Human Skin with Cell DIVE, v1.1

description: OMAP-4 was designed for Cell DIVE multiplexed imaging of formalin-fixed paraffin-embedded (FFPE) human skin. Cell DIVE<br>enables highly multiplexed single cell analysis using antibody-based imaging (Gerdes, MJ. et al, 2013) The tissue<br>slides were prepared with a two-step antigen retrieval process (pH 6 and pH 9, as described<br>https://dx.doi.org/10.17504/protocols.io.bpwumpew). Antigens were detected using either primary antibodies with<br>fluorophore-labeled secondaries or fluorescent dye conjugated antibodies (protocol can be found<br>https://dx.doi.org/10.17504/protocols.io.b4kgqutw). The panel contains 18 antibodies and the nuclear marker DAPI for<br>image registration and nuclear segmentation. This OMAP provides a spatial context for most anatomical structures and<br>cell types present in the [ASCT+B skin table, v1.1](https://doi.org/10.48539/HBM423.RTRR.746). Keratinocyte<br>populations can be identified based on their spatial location, distinct morphology and, in the case of corneocytes,<br>absence of nuclei. Additionally, the inclusion of protein biomarkers DDB2 and p53 allow profiling of skin damage and<br>aging effects. The panel was designed to get a broad representation of cell types found in the skin and in the future<br>will be expanded to include dermal dendritic cell (DC) markers (e.g. Langerin, CD11c). This panel does not include<br>markers targeting several immune cell subsets including Langerhans cells, mast cells, and gamma delta T cells.
DOI: 10.48539/hbm954.hngt.899
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Blood Vasculature, v1.2

description: [Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables](https://humanatlas.io/asctb-tables) aim to<br>capture the nested *part_of* structure of anatomical human body parts, the typology of cells, and biomarkers used to<br>identify cell types. The tables are authored and reviewed by an international team of experts. A more extensive<br>description of this work may be found in the pre-print of "Anatomical structures, cell types, and biomarkers of the<br>healthy human blood vasculature" by [(Boppana et al.<br>2022)](http://biorxiv.org/content/early/2022/03/01/2022.02.28.482302.abstract). The database and code used to generate<br>the more simplified view of the blood vasculature in these ASCT+B tables may be found<br>[here](https://github.com/hubmapconsortium/hra-vccf).
DOI: 10.6084/m9.figshare.30104779
title: R code and data

description: Tadpole_thermaltol_analyses: R code for paper testing the intrinsic differences in thermal tolerance between two closely-related species of frog that differ markedly in their invasion histories.Pond_temp_2022: shows temperature logger data collected in 2022 for a typical pond inhabited by the two species within their native range.CTmax: Experimental data on the critical thermal maximum of tadpoles of the two species.Acclimation_Analysis: Experimental data on the critical thermal maximum before and after acclimation to a warmer temperature.<br>
DOI: 10.6084/m9.figshare.30104779.v1
title: R code and data

description: Tadpole_thermaltol_analyses: R code for paper testing the intrinsic differences in thermal tolerance between two closely-related species of frog that differ markedly in their invasion histories.Pond_temp_2022: shows temperature logger data collected in 2022 for a typical pond inhabited by the two species within their native range.CTmax: Experimental data on the critical thermal maximum of tadpoles of the two species.Acclimation_Analysis: Experimental data on the critical thermal maximum before and after acclimation to a warmer temperature.<br>
DOI: 10.15468/dl.qj7ye8
title: Occurrence Download

description: A dataset containing 135958 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mozambique",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 135958 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053533-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48539/hbm527.rcxm.366
title: ASCT-B 3D Models Mapping, v1.0

description: This lookup table maps [Anatomical Structures, Cell Types and Biomarkers (ASCT+B)<br>Table](https://humanatlas.io/asctb-tables) terms to anatomical structure terms used in the [3D Reference Object<br>Library](https://humanatlas.io/3d-reference-library).
DOI: 10.48539/hbm953.vjhk.452
title: OMAP-3 Organ Mapping Antibody Panel (OMAP)  for Multiplexed Antibody-Based Imaging of Kidney with CODEX, v1.2

description: OMAP-3 was designed for CODEX (CO Detection by IndEXing) of fresh frozen human kidney samples<br>(https://doi.org/10.1038/s41596-021-00556-8, https://doi.org/10.1002/eji.202048891). The panel contains 24 antibodies<br>and the nuclear marker DAPI for image alignment and nuclear segmentation. Additional details on tissue preparation,<br>panel design, image analysis, and representative images can be found in accompanying publications<br>(https://doi.org/10.1016/j.kint.2021.08.033, https://doi.org/10.1016/j.xpro.2021.100747). This OMAP provides a spatial<br>context for all anatomical structures and most cell types present in the [ASCT+B kidney table<br>v1.1](https://doi.org/10.48539/HBM673.ZZDK.622). Additionally, the inclusion of tryptase and MARCKS allow profiling of<br>different regions in the glomeruli that are often affected by disease. Several cell types are identified by their<br>morphology, location in the kidney, and expression of Cytokeratin 7. The panel was designed to provide a survey of the<br>cell types found in the kidney and does not allow for granular phenotyping of immune cell populations. However, mast<br>cells, NK cells, T cells, and B cells are broadly classified by several markers included in this OMAP. The core and<br>essential protein biomarkers detailed here overlap (>40%) with a panel developed for multiplexed imaging of kidney<br>samples using imaging mass cytometry (IMC) (10.1172/jci.insight.129477).
DOI: 10.48539/hbm674.djkv.876
title: OMAP-1 Organ Mapping Antibody Panel (OMAP) for Multiplexed Antibody-Based Imaging of Human Lymph Node with IBEX, v1.2

description: OMAP-1 was designed for IBEX (Iterative Bleaching Extends multi-pleXity) imaging of fixed frozen human lymph nodes<br>(https://doi.org/10.1038/s41596-021-00644-9; https://doi.org/10.1073/pnas.2018488117). The panel contains 39<br>antibodies and the nuclear marker Hoechst 33342 for image alignment and nuclear segmentation. his OMAP provides a<br>spatial context for all anatomical structures and most cell types present in the [ASCT+B lymph node table,<br>v1.1](https://doi.org/10.48539/HBM573.SHCQ.259). Additionally, the inclusion of protein biomarkers BCL2, CD10, CD138,<br>and CD44 allow profiling of lymph node disease states, e.g. follicular lymphoma and metastasis. The core and<br>prioritized OMAP targets detailed here overlap (~50-85%) with panels developed for multiplexed imaging of lymphoid<br>samples using other technologies and sample preparations (https://doi.org/10.7554/eLife.31657,<br>https://doi.org/10.1002/eji.202048891). This OMAP does not contain antibodies for typing pericytes, plasmacytoid<br>dendritic cells, or different T helper lineages (Th1, Th2, Th17). Beyond spatial mapping of healthy human lymph nodes,<br>this OMAP was used to characterize the tissue microenvironment of follicular lymphoma lymph nodes. For this study,<br>object-based cellular segmentation was performed using a convolutional neural network (CNN)-based approach with Mask<br>R-CNN architecture and ResNet-50 as a backbone. As an input three channels were used: Hoechst for nuclei, CD45 as a<br>base membrane, and composite of several other membrane markers (CD138, CD163, CD94, CD69, CD8, CD4). More details and<br>accompanying datasets associated with OMAP-1 can be found here (https://doi.org/10.1101/2022.06.03.494716,<br>10.5281/zenodo.6629388). Several antibodies required custom conjugation by commercial suppliers or antibody<br>conjugation kits (e.g., AF532, Thermo A20182).
DOI: 10.48539/hbm434.pwtv.897
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Eye, v1.4

description: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables (https://humanatlas.io/asctb-tables) aim to capture<br>the nested eye structure of anatomical human body parts, the typology of cells, and biomarkers used to identify cell<br>types. The tables are authored and reviewed by an international team of experts. The Eye ASCT+B table v1.1 focused on<br>representing key ocular anatomical structures including the neural retina, lens, cornea, iris, and ciliary body, with<br>a focus on vascular, epithelial, and neural cell types. Version 1.2 expanded upon v1.1 with the addition of anatomical<br>structures including the fovea and macula, and cell types such as immune and endothelial. Version 1.4 added missing<br>ontology IDs and reordered rows to keep anatomical structure regions together.
DOI: 10.48539/hbm462.njkr.937
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Peripheral Nervous System, v1.0

description: [Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables](https://humanatlas.io/asctb-tables) aim to<br>capture the nested *part_of* structure of anatomical human body parts, the typology of cells, and biomarkers used to<br>identify cell types. The tables are authored and reviewed by an international team of experts.
DOI: 10.15468/dl.49wr87
title: Occurrence Download

description: A dataset containing 192002 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus nigra"
 ]
}

 The dataset includes 192002 records from 1174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053532-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfbj5f
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dicymbe uaiparuensis R.S.Cowan"
 ]
}

 The dataset includes 113 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154689-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.knbgkc
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apium fernandezianum Johow"
 ]
}

 The dataset includes 29 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146045-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5h6mm8
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriosyce megacarpa F.Ritter"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032013-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zhzxu
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blakea urbaniana Cogn."
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146046-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thvkru
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asplenium udzungwense Beentje"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031170-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.