cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/5thzsdjc5f
title: Code for Rapid and non-invasive early detection of lung cancer by integration of machine learning and salivary metabolic fingerprints using MS LOC platform

description: Most lung cancer (LC) patients are diagnosed at the advanced stages due to the lack of effective screening methods. Therefore, a non-invasive method for LC screening and early detection in large-scale clinical use is necessary. Herein, a total of 1043 saliva samples were collected from 334 LC patients and 709 non-LC volunteers from six hospitals and their metabolomics data were obtained using mass spectrometry Lab-on-a-Chip (MS LOC). This approach displays high speed and high-throughput capability (96 samples per batch) for stable salivary metabolic fingerprints acquisition. Utilizing machine learning-based feature screening, we identified 35 metabolic features for LC, indicating that metabolism was disturbed in saliva from LC patients. Subsequently, a classification model named SalivaMLD was developed using an ensemble voting strategy based on multiple machine learning algorithms. By combining the predictions from various models, the voting mechanism enhanced the model's classification accuracy and robustness. In the validation set, SalivaMLD demonstrated strong diagnostic performance, achieving an area under the curve (AUC) of 0.850, a sensitivity of 83.33%, and a specificity of 74.39%. In the test set, this model showed comparable effectiveness with AUC, sensitivity, and specificity of 0.849, 81.69%, and 74.23%, respectively, outperforming conventional tumor markers, such as carcinoembryonic antigen (CEA) and carbohydrate antigen 125 (CA125). Notably, SalivaMLD distinguished early-stage LC with an accuracy of 77.42%-81.97% and effectively differentiated LC with different pathology in both the validation and test sets. Hence, this method for screening LC by integration of machine learning and MS LOC-based salivary metabolic fingerprints may be widely applied in clinical practice for rapid and non-invasive detection.
DOI: 10.17632/bdgcy5yffg
title: Cutaneous manifestations of ataxia telangiectasia: A systematic review

description: Supplemental materials describing search terms and methods, a table of all studies included for final analysis, and demographics.
DOI: 10.17632/jpvs46xf6x
title: Data for: Depressive Symptomatology in Adolescents in Ghana: Examination of Psychometric Properties of the Patient health Questionnaire-9

description: Data on adolescent mental health in Ghana
DOI: 10.6084/m9.figshare.19247931.v1
title: Training data for MoTaNbTi quaternary interatomic potential.

description: The training and test data are BSON files using Mongodump from the MongoDB database. These files can be restored using the mongorestore utility. Each entry includes the structure, energy, force, and stress calculated from density functional theory (DFT). The total number of entries is 18870. <br>
DOI: 10.6084/m9.figshare.22347598.v1
title: Comparative evaluation of serum interleukin 6 with neutrophil - lymphocyte and platelet -lymphocyte ratio in pre and post-surgery oral squamous cell carcinoma.

description: A master chart detailing variables of IL-6, NLR , and PLR pre and post-operatively with demographic data and histopathological gradings
DOI: 10.17632/35dp3db8yj
title: RichSleep

description: RichSleep dataset contains overnight PSG sleep records of 24 subjects and corresponding label files. The dataset captured a total of eighteen physiological data in the PSG recordings, including six EEG channels ('F3-A2', 'F4-A1', 'C3-A2', 'C4-A1', 'O1-A2', 'O2-A1'), two EOG channels('EOG-L', 'EOG-R'), chin EMG, ECG, respiratory signals, snoring, leg movement, blood oxygen and carbon dioxide levels, chest and abdominal movement, and breath interval duration. The *xn.edf files are whole-night polysmnographic sleep recordings.The *xn-ann.txt files contain annotations of the sleep patterns that correspond to the PSGs. These patterns (hypnograms) consist of sleep stages W, 1, 2, 3, R . To minimize the effect of impedance on physiological signals, impedance was kept below 10 ohms during the collection process, with a sampling frequency of 200 Hz.
DOI: 10.17632/3pf5t6chcv
title: Research Questionnaire on Social Media Influencers

description: The Influence of Social Media Influencers and Promotions on Brand Value and Brand Loyalty on Social Media, Both Directly and Indirectly, Towards Students
DOI: 10.17632/748g9bt6pt
title: Trends in the Economic policy uncertainty research

description: All 859 publications on the topic of the Economic policy uncertainty on Scopus from 2006-2021!
DOI: 10.17632/ccpc2tj83r
title: Shortest multiple disconnected path for the analysis of entanglements in two- and three-dimensional polymeric systems

description: Abstract We present an algorithm which returns a shortest path and related number of entanglements for a given configuration of a polymeric system in 2 or 3 dimensions. Rubinstein and Helfand, and later Everaers et al. introduced a concept to extract primitive paths for dense polymeric melts made of linear chains (a multiple disconnected multibead ‘path’), where each primitive path is defined as a path connecting the (space-fixed) ends of a polymer under the constraint of non-interpenetration (exclude... Title of program: Z Catalogue Id: ADVG_v1_0 Nature of problem The problem is to obtain primitive paths substantiating a shortest multiple disconnected path (SP) for a given polymer configuration (chains of particles, with or without additional single particles as obstacles for the 2D case). Primitive paths are here defined as in [1, 2] as the shortest line (path) respecting 'topological' constraints (from neighboring polymers or point obstacles) between ends of polymers. There is a unique solution for the 2D case. For the 3D case it is unique if we constru ... Versions of this program held in the CPC repository in Mendeley Data ADVG_v1_0; Z; 10.1016/j.cpc.2005.01.020 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/fvfp4htspn
title: ADA Trastuzumab Additional Data

description: Additional Tables to Research Article "Pisarev V.V., Ivanov A.V. Detection of anti-drug antibodies to trastuzumab in serum by enzyme-linked immunosorbent assay. Biological Products. Prevention, Diagnosis, Treatment. https://doi.org/10.30895/2221-996X-2025-552"
DOI: 10.25378/janelia.24665568.v1
title: A representative cell cannot fully encapsulate a population

description: The underlying image data and analysis scripts for Figure 2 of <b><i>Believing is seeing – the deceptive influence of bias in quantitative </i></b><b><i>microscopy</i></b>.The file <i>U2OS_DAPI_488Tubulin_568Lamin_10Tiles_Slide1001.nd2</i> contains a tiled image of fixed cells as described in <i>README.txt</i> and in the associated publication. The relevant channels of this file are also provided as separate tif files (<i>U2OS_DAPI_488Tubulin_568Lamin_10Tiles_Slide1001_DAPI.tif</i>, <i>U2OS_DAPI_488Tubulin_568Lamin_10Tiles_Slide1001_Lamin.tif</i>, and <i>U2OS_DAPI_488Tubulin_568Lamin_10Tiles_Slide1001_Tubulin.tif</i>) to simplify use of the associated MATLAB script (<i>analyzeRepresentativeCells.m</i>). Expected output from the MATLAB script is also provided (<i>analysisOutput.zip</i>)
DOI: 10.6084/m9.figshare.5554657.v1
title: Experiment NoMT-SubjectJ-161026-0States

description: Experiment in which subject did not perform any mental imagery but passively watched the BCI's user interface, used to establish a baseline.
DOI: 10.17632/4hknbkfmzf
title: Data for: Vapour-Liquid Equilibrium of Acetone-CO2 Mixtures of Different Compositions at the Vicinity of the Critical Point

description: Pressure, coexisting liquid and vapor phase densities, liquid and vapor phase acetone mole fractions, and surface tension obtained from the entire set of simulations described in the paper
DOI: 10.17632/z5ygpzcrwc
title: Six Mathematica notebooks containing solutions for the response of aquifers to periodic forcing

description: This dataset contains six Mathematica notebooks (.nb files, Version 13.3.0) and six printouts of those notebooks (.pdf files) corresponding to Examples 1 to 6 in a paper published by Townley (1995). 

An early version of Mathematica was used during preparation of the original paper. In 2021, starting with a set of old .ma files, the six solutions were redeveloped, verified and extended. No errors were found in the mathematical solutions presented by Townley (1995), apart from a missing subscript. However, more than a dozen errors were found in Figures in the original paper, including one due to an error coding a function that was evaluated and plotted, incorrect axis labels, incorrect labels on curves and incorrect Figure captions. 

A decision was made to prepare an Addendum to the original paper. The author is grateful to the Editor of Advances in Water Resources (AWR), Prof. Graham Sander, for agreeing to publish an Addendum 28.5 years after initial publication (Townley, 2023a). His decision was based partly on the fact that when old issues of AWR were scanned and made available online, a number of 3D graphics became black, so that readers of the paper online have for many years been unable to see and visualise the original results. High quality 3D graphics are now available using the Mathematica notebooks provided here, in this dataset (Townley, 2023b).

References:
Townley, L.R. (1995), The response of aquifers to periodic forcing, Advances in Water Resources, 18(3), 125-146. https://doi.org/10.1016/0309-1708(95)00008-7
Townley, L.R. (2023a), Addendum to: “The response of aquifers to periodic forcing”, 18(3), 125-146, 1995, Advances in Water Resources, Volume 179, September, Article 104518. https://doi.org/10.1016/j.advwatres.2023.104518
Townley, L.R. (2023b), Six Mathematica notebooks containing solutions for the response of aquifers to periodic forcing, Mendeley Data, V1, doi: 10.17632/z5ygpzcrwc.1

Export of graphics for publication:
The Mathematica notebooks display graphics inside the notebooks. In order to prepare graphics for the new Addendum, plots were exported directly to .svg files (not acceptable for publication at this time), .eps files and .tif files (at 1000 dpi). The Background was set to "None", axes and frames were set to black using Directive[Black], and some labels were deleted. To help others who use Mathematica to produce high quality graphics for publication in future, this dataset also includes HowToExportGraphicsFiles.txt, which shows how to export two graphics files for Example 3.
DOI: 10.6084/m9.figshare.20138267.v1
title: Unlabelled Event Log Datasets and Experimental Results

description: Unlabelled Event Log Datasets
DOI: 10.6084/m9.figshare.21937157.v3
title: PADAPT 1.0 – the Pannonian Dataset of Plant Traits

description: PADAPT, the Pannonian Dataset of Plant Traits relies on regional data sources and collates data on 54 traits and attributes of the plant species of the Pannonian region. The current version covers approximately 90% of the species of the region and consists of 126,337 records on 2745 taxa. By including species of the eastern part of Europe not covered by other databases, PADAPT can facilitate studying the flora and vegetation of the eastern part of the continent.
DOI: 10.6084/m9.figshare.6303713.v1
title: bamboo-eating pandas gut metagenomes

description: The putative cyanide compounds degradation
DOI: 10.17632/2275rhvkt7
title: Results of a survey on expectations of adherence to project programs in construction projects

description: participants: 83, 66 full answers
region: german speaking countries
DOI: 10.17632/n8nt6rhszg
title: Raw data files

description: The raw data file of article will be published in Helyion.
DOI: 10.6084/m9.figshare.7512152.v1
title: Structural and Morphological Characteristics of Polyaniline Synthesized in Pilot Scale

description: ABSTRACT: Polyanilines have many applications in Aerospace, especially in their doped form. Studies on their synthesis in a pilot scale can contribute to obtain products with desirable characteristics for such applications. The present study reports the chemical oxidative synthesis of polyaniline in pilot scale and different reaction times in order to determine if there are variations in the polyaniline structure, morphology and conductivity due to these synthesis conditions. It is very common to analyze these data for polymers obtained through bench scale. However, several parameters change the properties of final material in major scales, such as thermal, mechanic and diffusive variables. Therefore, the reaction time is the only variable into the 9 syntheses carried out, and polyaniline is obtained in a doped form, being dedoped with ammonium hydroxide and redoped with dodecylbenzenesulphonic acid. The doped and redoped samples were characterized by their molecular structure, thermal behavior, crystallinity and morphology. The electrical conductivity of redoped samples was determined. Some differences in the structure and morphology of doped and dedoped forms, identifying the doping structures, were reported. This paper aims to present the relationship between changes on structure and morphology of doped and undoped polyaniline obtained by the mentioned experiments. Furthermore, some addicts on conductivity are carried out. It was possible to contribute in order to obtain a more conductive polyaniline in pilot scale.
DOI: 10.17632/zsswk4dpgr
title: Data for: Revisiting the Effects of Monetary Policy Shocks: Evidence from SVAR with Narrative Sign Restrictions

description: data and code
DOI: 10.6084/m9.figshare.27889143.v1
title: Replication package for paper "A traveling-wave strategy for plant-fungal trade"

description: Full replication package for paper "A traveling-wave strategy for plant-fungal trade". Notebooks and scripts in <code>Figure_plots</code> should produce all the panels of all figures and external data figures. The package contains also code and data to reproduce all the steps of the data analysis pipeline on an example dataset. Similar code (without the corresponding data) can be found on github.
DOI: 10.17632/6fsp9cfd34
title: Exercise-driven gut microbiota alteration enhances colonization resistance against methicillin-resistant Staphylococcus aureus

description: 16S rRNA gene sequencing data of mice before exercise; The genomes of B2 and MRSA T144
DOI: 10.17632/h3b7p2byfk
title: Exploring Engineering Students' Perceptions of AI in Education with the Technology Acceptance Model (TAM)

description: This research investigates perceptions of Artificial Intelligence (AI) in education through the framework of the Technology Acceptance Model (TAM).
DOI: 10.17632/cb4pmz9rnk
title: Data on the Effect of Active Learning Heuristic Problem-Solving Approach on Students’ Performance and Attitude towards Mathematics Word Problems 

description: In this article, we present data for the corresponding authors’ Ph.D. research project in mathematics education. The study investigated the direct and indirect relationship between students’ attitude towards, and performance in mathematics word problems (MWTs), mediated by the active learning heuristic problem-solving (ALHPS) approach. Specifically, the data reports on the direct and indirect correlation between students' performance and their attitude towards linear programming (LP) word tasks (ATLPWTs).  Four types of data were collected from 608 grade 11 students from eight secondary schools (both public and private). The participants were from two districts: Mukono and Mbale in Central Uganda and Eastern Uganda respectively. A mixed methods approach with a quasi-experimental non-equivalent group design was adopted. The data collection tools included standardized LP achievement tests (LPATs) for pre-test and post-test, the attitude towards mathematics inventory–short form (ATMI-SF), a standardized active learning heuristic problem-solving tool, and an observation scale. The data were collected from October 2020 to February 2021. All four tools were validated by mathematics experts, pilot-tested, and found reliable and suitable before they were administered to sampled students. To achieve the purpose of the study, eight intact classes from the sampled schools were selected using the cluster random sampling method. Of these, and by a toss of a coin, four were randomly assigned to the comparison group while the other four were randomly assigned to the treatment group. All teachers from the treatment group were trained on the application of the ALHPS approach in December 2021 before intervention. The participants’ demographic data (identification numbers, age, gender, school status, and school location) were presented with their raw scores obtained in the pre-test and post-test. The LPMWPs test items were administered to the students to explore and assess their problem-solving (PS), graphing (G), and Newman error analysis strategies. Students' percentage scores in the pretest and posttest were based on mathematizing word problems to optimization of LP problems. Data were analyzed in line with the purpose of the study, and the stated objectives. This data supplements other data sets and empirical findings on the mathematization of mathematics word problems, problem-solving strategies, graphing and error analysis prompts. This may serve and provide some insights into the extent to which ALHPS strategies may support students' conceptual understanding, procedural fluency, and reasoning among learners in secondary school mathematics. The LPMWPs test items in the supplementary data files can also act as a basis for the application of mathematics in real-life scenarios. The data is intended to develop, support, and strengthen students' problem-solving and critical thinking skills to enhance instruction and assessment in secondary schools and beyond.
DOI: 10.6084/m9.figshare.1248900.v1
title: Threat-related information suggests competence: A possible factor in the spread of rumors

description: Data for studies 1-5 described in our paper, Threat-related information suggests competence: A possible factor in the spread of rumors
DOI: 10.6084/m9.figshare.1593102.v3
title: The affects of human activity and disturbance on Goldenrod species abundance.

description: Group Members : Iiman Draman, Loyal Tran, James Quach, and Sajid Alvi. The following experiments were done two days at York University on Oct 14, 2015 and Oct 21, from 2:45-4:35pm within the grassland of the Danby Woodlot which consisted of plants, grass, insect, bird, and mowed and unmowed area. The weather on both days during the sampling period was chilly and windy but the sky was still clear .The purpose of this experiment was to compare and measure the abundance of Goldenrod affected by human activity (mowed and non-mowed area) and disturbance. The reason for this experiment was to try and understand if the abundance of Goldenrod species increase or decrease depended if there is or not a disturbance and human activity in an area that had been mowed and unmowed area. Group 1 members consisted of Iiman, Loyal, James, Sajid and Anisa but separated into two sub groups. One subgroup consisted of Loyal, James, and Sajid who measured the abundance of the Goldenrod species alive in non-mowed area and the other subgroup consisted of Anisa and Iiman who measured the abundance of the Goldenrod species in the mowed area. The equipment used to measure the abundance of the golden rod species were 2 quadrats (each 1m x1m) and 2 transects (each 30m). The area of disturbances were Keele Street (disturbance 1) and York University (disturbance 2) .The distance between the two disturbances were 100m transects laterally along the grassland measured, at every 5m on a 30m transect one quadrat was placed. The quadrats served as a tool to isolate a smaller area on the 30m transect, to count the abundance of Goldenrod species alive within that quadrat and the transects provided the specific set length from the edge of grassland closet to the disturbances (1 or 2) to other end of disturbances ( 1 or 2) closet to the grassland. A total of 5 transects were used for a total distance of 500m and a total number of quadrats used were 105. The abundance of the Goldenrod species varies within a single quadrats because the transect were randomly placed along the grassland . A method to distinguish the Goldenrod species within a single quadrats, the characteristic were numerous small yellow but since the sampling was done in colder weather there was not any flowers, texture of the leaf, and leafy stems. Since the temperature was colder on the last day the Goldenrod species started to shrive up and it became difficult count compared to the first day of sampling .The abundance of the Goldenrod species can be affected by many factors but one might had been competition with other plant/insect species within a single quadrat.
DOI: 10.6084/m9.figshare.28306691.v1
title: Data and Code for “Monitoring in Real Time and Far-Red Imaging of H₂O₂ Dynamics with Subcellular Resolution”

description: <b>Description:</b>This dataset contains the <b>code, data, and computational resources</b> used to generate the results presented in the paper <b>“Monitoring in Real-Time and Far-Red Imaging of H₂O₂ Dynamics with Subcellular Resolution.”</b><b>Contents:</b><b>Conda Environment</b> – Environment configuration to ensure reproducibility.<b>Data, Visualization, and Detailed Statistics</b> – Raw data and statistical analysis for <b>main and supplementary figures</b>.<b>ColabFold Prediction Structures</b> – Computationally predicted protein structures.<b>Analysis Code for Immunofluorescence (IF) Data</b> – Scripts for quantifying <b>nuclear translocation</b>.<b>Computational Cell-Scale Modeling Code</b> – Simulations for modeling <b>hiPSC-CMs</b> at the cellular level.This upload provides all necessary materials to <b>reproduce the analysis and visualizations</b> presented in the study.For any inquiries, please contact:Justin Daho Lee(justindaholee@gmail.com), Andre Berndt(Correspondence, berndtuw@uw.edu)
DOI: 10.17632/3xphsf6xgk
title: Genetic algorithm-optimized artificial neural network - optimization biomass and EPS

description: This module contains scripts to develop a GA-optimized ANN model from an experimental data set, and use the models for individual and multi-objective process optimization based on desirability, and Pareto font.
DOI: 10.17632/bbsm8tjgjy
title: picFoam: An OpenFOAM based electrostatic Particle-in-Cell solver

description: picFoam is a fully kinetic electrostatic Particle-in-Cell (PIC) solver, including Monte Carlo Collisions (MCC), for non-equilibrium plasma research in the open-source framework of OpenFOAM. The solver’s modular design, based on the same principles used in OpenFOAM, makes it highly flexible, by allowing the user to choose different methods at run time, and extendable, by building upon templated modular classes. The implementation of the PIC method employing the finite volume method, allows it to simulate on arbitrary geometries in one to three dimensions. OpenFOAM’s barycentric particle tracking is used effectively to perform charge and field weighting from the Lagrangian particle based description to the Eulerian field description and backwards without computational expensive particle searching algorithm. picFoam also includes open and general circuit boundary models for the description of real plasma devices.
DOI: 10.17632/cyjcvt37gx
title: Growth analysis and nutrient solution management of a soil-less tomato crop in a Mediterranean environment

description: In these datasets you may find information regarding dry matter content (Table 1), the consumption of nutrient solution in a soil-less tomato crop (Table 2) and the plant tissues composition (Tables 3-7).