cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/th095650
title: TH095650
title: Podocotyle

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.5281/zenodo.10728781
title: LYLO Benchmark

description: LYLO Benchmark dataset, consisting of lymphoma FDG PET/CT images (DICOM, Nifti), lesion segmentations (nifti) and reference total metabolic tumor values.
DOI: 10.5281/zenodo.11183893
title: LYLO Benchmark

description: LYLO Benchmark dataset, consisting of lymphoma FDG PET/CT images (DICOM, Nifti), lesion segmentations (nifti) and reference total metabolic tumor values. Whenever this dataset is used for publications, please include a reference to our benchmark paper published in the Journal of Nuclear Medicine, 2024, by Boellaard, Buvat et al.
DOI: 10.5281/zenodo.13255214
title: International TMTV Benchmark

description: International TMTV Benchmark dataset, consisting of lymphoma FDG PET/CT images (DICOM, Nifti), lesion segmentations (nifti) and reference total metabolic tumor values. Whenever this dataset is used for publications, please include a reference to our benchmark paper published in the Journal of Nuclear Medicine, 2024, by Boellaard, Buvat et al.
DOI: 10.15156/bio/th095651
title: TH095651
title: Polypogon

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15468/dl.2m93mn
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is one of (ECU.15.1.1_1, COL.1_2, PER.1_1, GUF, GUY, SUR, VEN.1_1, BRA.3_1, BRA.23_1, BRA.4_1, BRA.14_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Calyptranthes crebra McVaugh"
 ]
}

 The dataset includes 36 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054061-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28333646
title: Supplemental Data for: Manipulating Predictive Focus Improves the Taste Appreciation of Coffee

description: A summary of all responses to the questionnaires used in the article "Manipulating Predictive Focus Improves the Taste Appreciation of Coffee."
DOI: 10.15468/dl.brse6s
title: Occurrence Download

description: A dataset containing 8910 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Humulus scandens (Lour.) Merr., Humulus japonicus Siebold & Zucc., Antidesma scandens Lour., Humulus japonicus var. minor Nakai, Humulus japonicus var. variegatus F.Roem., Humulus lupulus Thunb., Humulus aculeatus Nutt., Humulus scandens var. variegatus (Siebold & Zucc.) Moldenke, Lupulus scandens (Lour.) St.-Lag., Humulopsis scandens (Lour.) Grudz.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 8910 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009955-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17866/rd.salford.16918180
title: Dataset of British English speech recordings for psychoacoustics and speech processing research

description: The Clarity Speech Corpus is a forty speaker British English speech dataset. The corpus was created for the purpose of running listening tests to gauge speech intelligibility and quality in the Clarity Project, which has the goal of advancing speech signal processing by hearing aids through a series of challenges. The dataset is suitable for machine learning and other uses in speech and hearing technology, acoustics and psychoacoustics. The data comprises recordings of approximately 10,000 sentences drawn from the British National Corpus (BNC) with suitable length, words and grammatical construction for speech intelligibility testing. The collection process involved the selection of a subset of BNC sentences, the recording of these produced by 40 British English speakers, and the processing of these recordings to create individual sentence recordings with associated prompts and metadata.<br>clarity_utterances.v1_2.tar.gz contains all the recordings as .wav files, with the accompanying metadata such as text prompts in clarity_master.json. Further details are given in the readme.<br><br>Sample_clarity_utterances.zip contains a sample of 10.<br>Please reference the following data paper, which has details on how the corpus was generated: Graetzer, S., Akeroyd, M.A., Barker, J., Cox, T.J., Culling, J.F., Naylor, G., Porter, E. and Muñoz, R.V., 2022. Dataset of British English speech recordings for psychoacoustics and speech processing research: the Clarity Speech Corpus. <i>Data in Brief</i>, p.107951.
DOI: 10.17866/rd.salford.16918180.v3
title: Dataset of British English speech recordings for psychoacoustics and speech processing research

description: The Clarity Speech Corpus is a forty speaker British English speech dataset. The corpus was created for the purpose of running listening tests to gauge speech intelligibility and quality in the Clarity Project, which has the goal of advancing speech signal processing by hearing aids through a series of challenges. The dataset is suitable for machine learning and other uses in speech and hearing technology, acoustics and psychoacoustics. The data comprises recordings of approximately 10,000 sentences drawn from the British National Corpus (BNC) with suitable length, words and grammatical construction for speech intelligibility testing. The collection process involved the selection of a subset of BNC sentences, the recording of these produced by 40 British English speakers, and the processing of these recordings to create individual sentence recordings with associated prompts and metadata.<br>clarity_utterances.v1_2.tar.gz contains all the recordings as .wav files, with the accompanying metadata such as text prompts in clarity_master.json. Further details are given in the readme.<br><br>Sample_clarity_utterances.zip contains a sample of 10.<br>Please reference the following data paper, which has details on how the corpus was generated: Graetzer, S., Akeroyd, M.A., Barker, J., Cox, T.J., Culling, J.F., Naylor, G., Porter, E. and Muñoz, R.V., 2022. Dataset of British English speech recordings for psychoacoustics and speech processing research: the Clarity Speech Corpus. <i>Data in Brief</i>, p.107951.
DOI: 10.17866/rd.salford.16918180.v2
title: Dataset of British English speech recordings for psychoacoustics and speech processing research

description: The Clarity Speech Corpus, a publicly available, forty speaker British English speech dataset. The corpus was created for the purpose of running listening tests to gauge speech intelligibility and quality in the Clarity Project, which has the goal of advancing speech signal processing by hearing aids through a series of challenges. The dataset is suitable for machine learning and other uses in speech and hearing technology, acoustics and psychoacoustics. The data comprises recordings of approximately 10,000 sentences drawn from the British National Corpus (BNC) with suitable length, words and grammatical construction for speech intelligibility testing. The collection process involved the selection of a subset of BNC sentences, the recording of these produced by 40 British English speakers, and the processing of these recordings to create individual sentence recordings with associated prompts and metadata.
DOI: 10.48597/cxyv-m8f4
title: Measurement of Aerosol_absorption_coefficient at Mount Chacaltaya

description: Measurement of Aerosol_absorption_coefficient at Mount Chacaltaya
DOI: 10.5284/1125048
title: Images and Text from an Archaeological Monitoring and Recording Survey at the Former Bretonside Bus Station, Bretonside, Plymouth, Devon December 2017 - February 2018

description: This collection comprises images and site records from an archaeological monitoring and recording survey at Bretonside Bus Station, Bretonside, Plymouth, Devon undertaken by South West Archaeology Ltd. (SWARCH) between December 2017 and February 2018.
DOI: 10.5281/zenodo.14267067
title: Supplementary Information for 'Smoke in your eyes…'

description: The file contains pdf version of Numbers spreadsheets used for data analysis in the paper 'Smoke in your eyes: An investigation of the effects of wind power on weather trends and climate using time series analysis'
DOI: 10.5281/zenodo.14267066
title: Supplementary Information for 'Smoke in your eyes…'

description: The file contains pdf version of Numbers spreadsheets used for data analysis in the paper 'Smoke in your eyes: An investigation of the effects of wind power on weather trends and climate using time series analysis'.

The supplementary data have been updated to include recalculation of the CCFs using a Python script incorporating standard function np.correlate. Errors in sheets 3-5-2 and 3-5-3 have been corrected, leading to correction of fig. 16 in the main text.
DOI: 10.5281/zenodo.14793714
title: Supplementary Information for 'Smoke in your eyes…'

description: The file contains pdf version of Numbers spreadsheets used for data analysis in the paper 'Smoke in your eyes: An investigation of the effects of wind power on weather trends and climate using time series analysis'.

The supplementary data have been updated to include recalculation of the CCFs using a Python script incorporating standard function np.correlate. Errors in sheets 3-5-2 and 3-5-3 have been corrected, leading to correction of fig. 16 in the main text.
DOI: 10.5281/zenodo.14793756
title: Petermann Island Mavic Pro 120m ASL January 2025

description: Aerial stills from a 120m ASL structured UAV survey of Petermann Island (Antarctica) using DJI Mavic Pro Platinum, January 2025.  Survey designed using Map Pilot Pro v5.12.6
DOI: 10.5281/zenodo.14793757
title: Petermann Island Mavic Pro 120m ASL January 2025

description: Aerial stills from a 120m ASL structured UAV survey of Petermann Island (Antarctica) using DJI Mavic Pro Platinum, January 2025.  Survey designed using Map Pilot Pro v5.12.6
DOI: 10.6084/m9.figshare.28333727
title: J_W_Datasets_Rickettsia_E_E.xlsx

description: Dataset for Ticks and Rickettsia prevalence in the great Tits in the city of Lodz central Poland.
DOI: 10.15468/dl.js6v9a
title: Occurrence Download

description: A dataset containing 24548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hydrocotyle ranunculoides L.fil., Hydrocotyle natans Cyrillo, Hydrocotyle ranunculoides var. ranunculoides, Hydrocotyle natans Torr., Hydrocotyle cymbalariifolia Muhl. ex Elliott, Hydrocotyle nutans G.Don ex Loudon, Hydrocotyle ranunculoides var. lobata Urb., Hydrocotyle cymbalariaefolia Muhl., Hydrocotyle ranunculoides var. incisocrenata Urb., Hydrocotyle prolifera Otto ex Sweet, Hedera natans Cyr., Hydrocotyle ranunculoides var. adoensis Urb., Hydrocotyle prolifera Otto, Hydrocotyle adoensis Hochst., Hydrocotyle ranunculoides var. genuina Urb., Hydrocotyle americana Walter, Hydrocotyle ranunculoides f. minima Kuntze, Hydrocotyle ranunculoides var. brasiliensis Urb., Hydrocotyle natans Cirillo, Hydrocotyle batrachioides DC., Hydrocotyle cymbalariifolia Muhl., Hedera natans Cirillo, Hydrocotyle ranunculoides var. natans (Cirillo) Urb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 24548 records from 248 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009956-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqqw5q
title: Occurrence Download

description: A dataset containing 112591 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pygoscelis adeliae (Hombron & Jacquinot, 1841)"
 ]
}

 The dataset includes 112591 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009950-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsbyd2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liolaemus balagueri Villegas-Paredes, Huamaní-Valderrama, Luque-Fernández, Gutiérrez, Quiróz & Abdala, 2020",
 "Year is greater than or equal to 2020"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009957-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10650349
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.58033/w4vy-7q28
title: Atazanavir/Ritonavir Increased Tizoxanide Exposure from Oral Nitazoxanide through Pharmacokinetic Interaction in Healthy Volunteers (dataset)
DOI: 10.5281/zenodo.14617752
title: Raw data for A non-hydrolysable peptidomimetic for mitochondrial targeting
title: Data for A non-hydrolysable peptidomimetic for mitochondrial targeting

description: Confocal microscopy files and source data for the plots for the main figures of the paper
DOI: 10.5281/zenodo.14617753
title: Raw data for A non-hydrolysable peptidomimetic for mitochondrial targeting
title: Data for A non-hydrolysable peptidomimetic for mitochondrial targeting

description: Confocal microscopy files and source data for the plots for the main figures of the paper
DOI: 10.15468/dl.k4amsz
title: Occurrence Download

description: A dataset containing 4591 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is WII Herbarium Dataset"
 ]
}

 The dataset includes 4591 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009958-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.11588/data/kh6ndd
title: Soft X-ray tomography reveals variations in B.subtilis biofilm structure upon tasA deletion [Data]

description: Bacterial biofilms are complex communities of cells within a self-produced extracellular matrix. They play crucial roles in healthcare, nutrition, agriculture and environmental research, yet an analysis of their elaborate 3D architecture remains challenging. In our work, we developed a “biofilm-in-capillary” growth method compatible with full-rotation soft X-ray tomography, providing high-resolution 3D imaging of bacterial cells and their surrounding extracellular matrix during biofilm formation, without drying or fixation steps. These datasets are reconstructed 3D volumes obtained by soft X-ray tomography of WT and ΔtasA mutants, including rescue with TasA protein. &lt;br/&gt;
The data is organized in individual *.tif files with prefixes as follows:&lt;br/&gt;
&lt;ul&gt;
&lt;li&gt;for single-cell suspension WT "Diehl_Biofilm_Bacillus_subtilis_WT_GFP_0h_10797";
&lt;/li&gt;&lt;li&gt;for single-cell suspension ΔtasA mutants "Diehl_Biofilm_Bacillus_subtilis_tasA_GFP_0h_10801_";
&lt;/li&gt;&lt;li&gt;for WT biofilm formed after 22h "Diehl_Biofilm_Bacillus_subtilis_WT_GFP_10479";&lt;/li&gt;&lt;li&gt;for ΔtasA biofilm formed after 22h "Diehl_Biofilm_Bacillus_subtilis_tasA_GFP_10517";&lt;/li&gt;&lt;li&gt;for ΔtasA biofilm formed after 44h "Diehl_Biofilm_Bacillus_subtilis_tasA_GFP_ctrl_44h_10815";&lt;/li&gt;&lt;li&gt;for ΔtasA biofilm with the addition of TasA protein formed after 44h "Diehl_Biofilm_Bacillus_subtilis_tasA_GFP_rescue_44h_10821"&lt;/li&gt;&lt;/ul&gt;
DOI: 10.11588/data/ljlamx
title: Genetic encoding and expression of RNA origami cytoskeletons in synthetic cells [Research Data]

description: Bottom-up synthetic biology seeks to engineer a cell from molecular building blocks. Using DNA nanotechnology, building blocks, such as cytoskeletons, have been reverse-engineered. However, DNA nanostructures rely on chemical synthesis and thermal annealing, and therefore synthetic cells cannot produce them from their constituents such as nucleotides. Here, we introduce RNA origami cytoskeleton mimics as alternative nucleic acid-based molecular hardware for synthetic cells, which we express directly inside GUVs containing a DNA template and a polymerase, chemically fuelled by feeding nucleotides from the outside. We designed RNA origami tiles that fold upon transcription and self-assemble into micrometer-long, 3D RNA origami nanotubes under isothermal conditions. We observe sequence mutations on the DNA template lead to RNA origami nanotubes and closed-ring phenotypes. Molecular dynamics simulations show that these phenotypic transitions are governed by alterations in the stability of RNA secondary structures. Additionally, we achieve cortex formation with aptamer-functionalized RNA nanotubes and show that nanotube polymerization leads to membrane deformation. Altogether, our data suggest that the expression of RNA origami-based hardware will help to explore active, evolvable, and RNA-based synthetic cells.
DOI: 10.58033/jvm0-kj86
title: Validation and Clinical Application of a Liquid Chromatography–Ultraviolet Detection Method to Quantify Dolutegravir in Dried Blood Spots (dataset)
DOI: 10.15468/dl.t95rnz
title: Occurrence Download

description: A dataset containing 12000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Impatiens balfourii Hook.fil., Impatiens insubrica Beauverd, Impatiens mathildae Chiov.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 12000 records from 358 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009959-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10650381
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.6084/m9.figshare.28333778
title: Supplementary Material for: Secular trends of the incidence of encephalitis and outcomes of postencephalitic epilepsy in Taiwan: A nationwide population-based study

description: Background: Encephalitis can lead to significant disability among survivors. Up-to-date estimates of encephalitis incidence and the risk of postencephalitic epilepsy (PE) are crucial for informing health policy.
Methods: We used the National Taiwan Insurance Research Database to estimate the standardized incidence of encephalitis for each year from 2003 to 2017. We analyzed PE among these cases.
Results: From 2003 to 2017, the age- and sex-standardized incidence of encephalitis increased from 5.95 (95% confidence interval [CI]: 5.61–6.28) to 10.46 (95% CI: 10.04–10.87) per 100,000 person-years, with an annual percentage change of 1.6% (1.1–2.2, p &lt; 0.05). However, yearly variation was observed. The incidence was consistently higher in patients under 18 years than in those aged ≥ 18 years throughout the study period. In 2017, the highest annual incidence was seen in adults aged ≥ 70 years and in children aged 1–4 years. Approximately 20% of the survivors developed PE within 5 years, with the highest risk observed in infants under 1 year of age.
Conclusions: The overall incidence of encephalitis in Taiwan increased from 2003 to 2017. Pediatric patients, particularly those under 1 year of age, are more vulnerable to encephalitis and its long-term complications, including PE, compared to adults, except for those aged ≥ 70 years.
DOI: 10.6084/m9.figshare.28333778.v1
title: Supplementary Material for: Secular trends of the incidence of encephalitis and outcomes of postencephalitic epilepsy in Taiwan: A nationwide population-based study

description: Background: Encephalitis can lead to significant disability among survivors. Up-to-date estimates of encephalitis incidence and the risk of postencephalitic epilepsy (PE) are crucial for informing health policy.
Methods: We used the National Taiwan Insurance Research Database to estimate the standardized incidence of encephalitis for each year from 2003 to 2017. We analyzed PE among these cases.
Results: From 2003 to 2017, the age- and sex-standardized incidence of encephalitis increased from 5.95 (95% confidence interval [CI]: 5.61–6.28) to 10.46 (95% CI: 10.04–10.87) per 100,000 person-years, with an annual percentage change of 1.6% (1.1–2.2, p &lt; 0.05). However, yearly variation was observed. The incidence was consistently higher in patients under 18 years than in those aged ≥ 18 years throughout the study period. In 2017, the highest annual incidence was seen in adults aged ≥ 70 years and in children aged 1–4 years. Approximately 20% of the survivors developed PE within 5 years, with the highest risk observed in infants under 1 year of age.
Conclusions: The overall incidence of encephalitis in Taiwan increased from 2003 to 2017. Pediatric patients, particularly those under 1 year of age, are more vulnerable to encephalitis and its long-term complications, including PE, compared to adults, except for those aged ≥ 70 years.
DOI: 10.15468/dl.upxkdu
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liolaemus gallardoi Cei & Scolaro, 1982",
 "Year is greater than or equal to 2020"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009960-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.