cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26984111.v2
title: Molecular characterization of emerging recombinant African swine fever virus of genotype I and II in Vietnam, 2023

description: African swine fever virus (ASFV) recombinant strains pose new challenges for diagnosis and control. This study characterizes genotype I and II recombinant ASFV strains identified in northern Vietnam in 2023 through whole-genome sequencing and comparative genomic analysis. Seven ASFV-positive samples from six provinces were analyzed, with recombinant strains detected in Bac Giang, Phu Tho, and Vinh Phuc provinces. Isolates showed hemadsorption positivity despite having genotype I B646L, indicating their recombinant nature. Genome-wide analysis revealed 19 recombination breakpoints consistent with Chinese recombinant strains. Vietnamese isolates shared 99.86-99.98% nucleotide identity with Chinese recombinants, forming a distinct monophyletic group. Comparative analysis identified 50 SNPs and INDELs, with 39 variations found across Vietnamese strains, distinguishing them from Chinese isolates. Unique genetic markers in C962R, I329L, and MGF 505-11L genes distinguished Vietnamese recombinants from Chinese counterparts, while mutations in C122R and NP1450L differentiated all recombinants from parental genotypes. The central variable region (CVR) of the B602L gene showed diversity among Vietnamese isolates, while the I73R-I329L intergenic regions were recognized as in the IGR2 group. This study enhances understanding of recombinant ASFV evolution through homologous recombination and identifies new genetic markers for improved detection and characterization. The observed genetic diversity highlights challenges for existing diagnostic methods and vaccine development, emphasizing the need for continued surveillance and research into the functional implications of these genetic variations on ASFV pathogenicity and transmissibility.
DOI: 10.6084/m9.figshare.3556704.v1
title: Appendix A. A table listing the biomass of each herbivorous fish species observed inside and outside of no-take marine reserves at three locations in Fiji.

description: A table listing the biomass of each herbivorous fish species observed inside and outside of no-take marine reserves at three locations in Fiji.
DOI: 10.6084/m9.figshare.5783037.v3
title: Mooney face stimuli for visual perception research

description: We present a data base of 504 so-called Mooney faces for visual perception research. The images are available in bmp and tif formats. Each image is available in upright and upside-down orientation. 96 manually scrambled images are also included. In addition, there are behavioral results (as a csv file) for 18 subjects doing a face detection task: % subjects recognized as face upright, % subjects recognized as face inverted, median reaction time difference between upright and inverted presentations in ms for each stimulus. For details, please see accompanying manuscript, available at http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0200106. <br><br>This work is licensed under a CC-BY license. If using this work, you must acknowledge their source by citing our paper and adhere to the terms of the CC-By 4.0 license. <br>
DOI: 10.6084/m9.figshare.6045260.v1
title: A program of physical activity improves gait impairment in people with Alzheimer's disease

description: Abstract AIM This study aimed to identify the effects of aging and Alzheimer’s disease (AD) on gait parameters after a four-month period and to investigate the effects of a four-month program of physical activity, with emphasis on the cognitive components of gait during single and dual task, in people with AD. METHODS Twenty-three people with AD, divided into the Training Group (TG; n=12; aged 79.17±7.62 years) and the Control Group (CG; n=11; aged 77.00±5.57 years), and eleven healthy older adults (Healthy Group - HG; aged 75.82±4.83 years) were included in this study. TG participated in a physical activity program for four months. The CG and HG were instructed not to participate in any kind of regular physical activity in this period. The physical activity program includes motor activities and cognitive tasks simultaneously. The participants attended a 1-h session three times a week. The kinematic parameters of gait were analyzed under two conditions, before and after a physical activity program: single and dual task. Deltas for all dependent variables between pre and post training were calculated. The deltas were compared using two-way ANOVAs with group (TG x CG and CG x HG) and task (single x dual task) as factors, with repeated measures for task. RESULTS After the training period, the TG improved stride length, duration, velocity and cadence compared to the CG. CONCLUSION Physical activity with emphasis on cognitive components promotes better reallocation of attention while walking in people with AD, improving attentional focus on the gait and thus resulting in a safer locomotive pattern.
DOI: 10.17632/22zvv8w89y
title: HRM TQM and Corporate Image

description: The data is generated from Engineers of automobile industry of India collaboratively to study HRM practices and TQM for understanding Corporate Image.
DOI: 10.17870/bathspa.13241087.v3
title: Appendix A - Information and Consent Form - Participants - Using Creative Writing to Explore Identity Formation: A Participatory Study with Adolescents in Post-Conflict Colombia (PhD Thesis)

description: This document has been uploaded as an appendix for the thesis, <i>Using Creative Writing to Explore Identity Formation: A Participatory Study with Adolescents in Post-Conflict Colombia</i>.<br>This item contains the final version of the Information and Consent Form shared with the individual participants. The open access version deposited here is redacted where necessary to protect personal details.
DOI: 10.6084/m9.figshare.14661234.v1
title: BMC phylogenomic dataset of 53 conserved proteins

description: A revised version of the dataset used for phylogenomic reconstruction of Holomycota by Capella-Gutiérrez et al. (2012).
DOI: 10.6084/m9.figshare.25326076.v1
title: <i>Supporting Information for</i> Understanding the origin of stereoselectivity in the photochemical denitrogenation of 2,3-diazabicyclo[2.2.1]heptene and its derivatives with non-adiabatic molecular dynamics.

description: This dataset contains computational chemistry output files related to various quantum chemical calculations. The files are organized as follows:<b>VEE - contains log file for vertical excitation energy calculations for the optimized geometry with </b>ωB97X-D/aug-cc-pVTZ, SA4-CASSCF(8,9)/ANO-S-VDZP, and XMS-CASPT2(8,9)/ANO-S-VDZP<b>OPT - </b>log file, xyz, orbital files for optimized geometries with SA4-CASSCF(8,9)/ANO-S-VDZP<b>MEP - </b>Log files from minimum energy path (MEP) calculations and mep.molden that contains the geometry from MEP with SA4-CASSCF(8,9)/ANO-S-VDZP<b>Dynamics</b><br>A directory that contains subdirectories with the following types of data for molecular dynamics simulations for each trajectory with SA4-CASSCF(8,9)/ANO-S-VDZP: log files, energies, charges, velocities, and geometries <br>
DOI: 10.17632/hh8rjjh73w
title: Inter-participant variability of loading characteristics applied on osseointegrated implant by transfemoral bone-anchored prostheses fitted with basic components during daily activities

description: The mean and standard deviation as well as lower and upper limits of 95% confidence interval of the spatio-temporal gait characteristics, loading boundaries and loading extremum applied on osseointegrated implant by transfemoral bone-anchored prostheses fitted with basic components during level walking. ascending and descending ramp and stairs.
DOI: 10.6084/m9.figshare.20488287.v1
title: 老年人需求挖掘

description: 老年人需求挖掘
DOI: 10.6084/m9.figshare.22691179.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.28856873.v1
title: Transport Remit in Poland—Dataset

description: Transport Remit in Poland—DatasetFigure 1 DatasetFigure 2 DatasetIncoterms Dataset (Tables)
DOI: 10.6084/m9.figshare.10820516.v1
title: OpenWSI

description: This dataset provides instructions on how to create an low-cost whole slide imaging prototype via single-shot autofocusing and open-source hardware.
DOI: 10.6084/m9.figshare.28199999.v2
title: Kidney Panel Variants (MSS)

description: The uploaded file contains the complete list of genetic variants identified in a pediatric patient following whole exome sequencing (WES). The analysis was refined by applying a targeted filtering approach, focusing exclusively on a curated kidney disease panel. This panel encompasses genes associated with renal pathologies, and only variants with a sequencing depth greater than 20 were retained to ensure reliability and accuracy in the data. These steps aim to provide a robust dataset for investigating potential genetic contributors to the patient's clinical presentation.
DOI: 10.17632/bkmmj23bhv
title: Data set: creación, recuperación y uso

description: Curso de Ciencia Abierta en Universidad de Santander, Colombia. Clase 5. Data set: creación, recuperación y uso
Tipos de data set existentes, formas de recuperar data set, formas de crear data set y formas de citarlos. Crear un dataset con base en sus investigaciones. Creadores y Credit Taxonomy. Descripción y utilización. Periodos de embargo. Copyright y privacidad en los dataset. Subirlo al repositorio de datos institucional. Período de moderación. Registro de data set en perfiles ORCID.
DOI: 10.6084/m9.figshare.21655613.v1
title: symptoms.txt

description: Symptoms (n=12)
DOI: 10.6084/m9.figshare.28171535.v1
title: International Public Multilateral Climate Finance Dataset from 2000 to 2023

description: International multilateral public climate finance plays a key role in the global climate financing landscape, yet the availability of a comprehensive, publicly accessible, and transparent database remains inadequate. This study establishes a global multilateral public climate finance database covering the period from 2000 to 2023. The primary objective is to identify and track climate-related projects and their funding flows supported by major multilateral development finance institutions (MDFIs) and multilateral climate funds (MCFs). Using machine learning methods, we extracted and classified climate mitigation and adaptation-related projects from project-level data, creating a climate finance database containing detailed information on funding sources, institutions, project types, recipient countries, financing amounts, and financing types. This database provides valuable insights into the distribution and trends of international climate finance, offering data support for climate finance policies and decision-making.
DOI: 10.6084/m9.figshare.28942109.v1
title: Supplementary Datasets

description: Supplementary Data 1-9. Spatial visualization of annotated cell clusters across synovial tissue sections by samples.
DOI: 10.17632/sfv89789x4
title: Comprehensive earthquake-induced landslide inventory dataset of the 2010 Chile megathrust earthquake

description: The dataset was collected from bibliographic compilation, mapping by interpretation of Landsat satellite images, and field inspections; for the bibliographic compilation reviewed 107 technical reports of the National Geological and Mining Survey of Chile (SERNAGEOMIN) related to the Maule earthquake, from which the relevant information of landslides and lateral spreads was extracted. Also, the georeferenced reports of road network interruption problems caused by the Maule earthquake, undertaken by the Ministry of Public Works, were reviewed. Finally, it incorporated an inventory of lateral spreads provided by Verdugo (2012) and the inventory of landslides in the coastal fringe of the Biobio administrative region provided by Mardones and Rojas (2012). Additionally, coseismic landslides were mapped by using Google Earth to interpret Landsat satellite images (Landsat 5-7-8; provider, NASA; resolution, 30 m) before and after the earthquake. These strips were visually inspected at an eye height of ~ 1–2 km, decreasing the height when an alteration was detected in the vegetation or when bare spots or typical mass movement morphologies were present (Soeters and Van Western, 1996). ]. It was visually inspected, and the earliest available images after the earthquake were mapped at 1:2000 and 1:10,000. Once a landslide was identified, the location was compared with the latest preseismic image without cloud or snow cover and the landslide was mapped as a polygon. Field inspections were undertaken in the coastal regions, where the higher densities of landslides are located. The minimum size considered for the mapping was 30 m2, although field inspections showed that an indefinite number of small mass movements were not recognised on the satellite images.
DOI: 10.6084/m9.figshare.23641202.v1
title: Does outgroup media exposure reduce prejudice in real life? Testing mediated contact effects with media diets in South Africa

description: Mediated intergroup contact can reduce recipients’ prejudice. However, prior studies have mainly examined the effects of carefully selected stimuli, contents, and genres. We investigated whether outgroup exposure on the level of real-life, multi-channel media diets is associated with reduced prejudice. Prior scholarship offers contradictory expectations: We tested this with survey data from South Africa where the numeric group constellation and the media system should make blatant stereotyping in traditional media less likely. While social media interactions were associated with more positive attitudes, effects in traditional media varied across the type of medium and sample. This suggests that it will be difficult to associate a person’s general media usage with their prejudice. We discuss the challenges for future tests of the real-life potential of mediated intergroup contact. Altogether, our study dampens initial hopes and underlines the importance of targeted interventions and outstanding single contents.
DOI: 10.6084/m9.figshare.27016279.v2
title: A telomere-to-telomere assembly of the <i>Phragmites australis</i> genome with B chromosomes

description: The files here are from the article "Telomere-to-telomere <i>Phragmites australis </i>reference genome assembly with a B chromosome provides new insights into its evolution and polysaccharide biosynthesis". Including chromosome genome assembly, annotation files, CDS sequences and protein sequences.<br>
DOI: 10.6084/m9.figshare.9393062.v1
title: low resolution images dataset

description: low resolution images generated from 4 cameras.
DOI: 10.17632/v5mfx33m7n
title: Comparative Analysis of Thermoregulation Models to Assess Heat Strain in Moderate to Extreme Heat: Data

description: The dataset includes source codes for various thermoregulation models used to validate and compare performance in simulating heat strain under moderate to extreme heat exposure. The folder is organized into four subfolders, each containing the source code and output files for a specific thermoregulation model:

Modified Stolwijk Model (Stolwijk-2024 Model)
Traditional Stolwijk Model (Stolwijk-1971 Model)
Two-Node Gagge Model
JOS-3 Model
Contents and Structure
Source Codes:
Each subfolder contains the model's source code written in MATLAB/Python. The codes are extensively documented with comments explaining the purpose and functionality of each component, ensuring ease of use and modification.

Output Files:
The output files illustrate model simulations for various scenarios, including extreme heat exposure. For example, the models replicate the conditions described in Case 7 of Table 2 in the manuscript.

Reference for Experimental Data and Exposure Details
The experimental data and comprehensive descriptions of the exposure scenarios are derived from:
Stolwijk, J. A., & Hardy, J. D. (1966). Partitional calorimetric studies of responses of man to thermal transients. Journal of Applied Physiology, 21(3), 967–977.

This seminal work provides the foundation for comparing the models' predictions to real-world physiological responses.

Additional Resources
Model Descriptions:
The detailed mathematical formulations and governing equations for each model are available in the manuscript and its supplementary material. These resources provide critical insights into the underlying mechanisms and assumptions of the thermoregulation models.

Use and Citation Guidelines:
If you use, reproduce, or modify the source codes, please cite the following publication:
Comparative Analysis of Thermoregulation Models to Assess Heat Strain in Moderate to Extreme Heat, published in Journal of Thermal Biology.
DOI: 10.6084/m9.figshare.24270268.v1
title: Supplementary Material for: Pediatric mesangial proliferative glomerulonephritis has increased the platelet thrombus formation potentials under high-shear flow condition

description: Introduction: Blood coagulation is associated with glomerulonephritis (GN) pathophysiology. Using whole-blood-based rotational thromboelastometry, we recently reported that the degree of hypercoagulability in pediatric patients with immunoglobulin A nephropathy (IgAN), a GN, might be associated with pathological severity. To further clarify the coagulation status of mesangial proliferative glomerulonephritis (MesPGN), we assessed the platelet thrombus formation (PTF) under high-shear flow using a microchip-based flow chamber system (T-TAS®). Methods: Thirty-four pediatric patients definitively diagnosed with MesPGN by renal biopsy at Nara Medical University Hospital between 2015 and 2022 were enrolled, and 29 patients (case group; median age, 8.0 years) were assessed. Microchips coated with collagen (PL-chip) were used to assess PTF at high-shear in whole blood. The times to increase by 10 and 30 kPa (T10 and T30) from baseline were calculated and compared with those of the pediatric controls. Changes in the parameters during the treatment course and the relationship between pathological severity and the parameters were evaluated. Results: T10 and T30 parameters in the PL-chip were significantly shorter and the area under the curves were greater in the case group than those in the control group (both p &lt;0.05). Each parameter was enhanced during the 3-week treatment but improved after the end of treatment. No significant relationship was observed between pathological severity and these parameters. Little PTF difference was observed between IgAN and Henoch-Schönlein purpura nephritis. Conclusions: Pediatric MesPGN increased the potential for PTF under high-shear flow conditions.
DOI: 10.6084/m9.figshare.3586932.v1
title: Training set of clinical meta-data

description: This MD Anderson Cancer Center set of anonymized high-quality computed tomography (CT) scans with contrast represent a comparatively homogenous, uniform cohort of 315 oropharyngeal squamous carcinomas with detailed clinical history, consistent follow-up of &gt; 2 years, known etiological/biological correlates (specifically, human papilloma virus status). Our major target is to assess/validate the radiomics workflow and predictive capacity of radiomics signatures from challenge participants.We imported the CT scans from the patients’ electronic medical records, that were performed before the initiation of the radiation treatment course. All the patients were treated using the IMRT modality. Some patients were simultaneously prescribed chemotherapy. We intended that the CT films would be as much representative of the original simulation CT scans that were used for treatment planning, in which no contrast was injected according to our institutional policy.Specifically, we posted one-half of the CT files from the dataset, in DICOM-RT format, on the Kaggle in Class server system, as a “training set”. DICOM-RT files were fully anonymized, with expert physician segmented primary tumor and lymph node regions of interest, to eliminate segmentation-related uncertainty for challengers. The primary oropharyngeal tumor was segmented in red. Whereas, the metastatic cervical lymph nodes were segmented individually, rather than on the basis of the nodal level classification system. The green color was applied in contouring the nodes. Both training and test sets include the following data for each DICOM-RT case:agegenderracetumor side and subsiteT-categoryN-categoryAJCC stagePathologic gradesmoking status (in pack-years)Challenge participants will also be able to download a “test" dataset, with the remaining random selected half of the dataset, which will have the HPV status blinded.<br>
DOI: 10.17632/8g2bsgbyd8
title: Two-dimensional C36 fullerene network; An isotropic, auxetic semiconductor with low thermal conductivity and remarkable stiffness 

description: Data for our manuscript:
Energy minimized structures in VASP POSCAR, for the single-layer and bulk find: “POSCAR-SL” and “POSCAR-Bulk”, respectively. 
Complete AIMD training datasets for MTP, find: “training-data.cfg”
Fitted MTP for the evaluation of mechanical, phonon dispersion and thermal conductivity, find: “p.mtp” 
LAMMPS input file, find: “LAMMPS-input”
AIMD results for the thermal stability at 100, 1500 and 2000 K, find: “AIMD.zip”
Videos related to the uniaxial deformation at various temperatures, T, find: “Deformation-TK.mp4”
NPT relation of a loaded network after the tensile strength point, find: “Relaxation-500K.mp4”
DOI: 10.17632/nmjjgbckb4
title: Multiple nuclear gene alignments used in "Phylogenomics reveals Adeleorina are not Coccidia, instead forming a distant independently-branching major subgroup of Apicomplexa"

description: Multiple nuclear gene alignments used to for phylogenomic trees and phylogenomic analyses to assess the position of Adeleorina on the tree of Apicomplexa.
DOI: 10.17632/r9sw9bjts9
title: HPEO code and benchmark study

description: This document includes the HPEO algorithm and scripts necessary for generating all plots featured in the article titled 'Heuristic Particle Elimination Optimization (HPEO) Algorithm for Efficient Structural Design: A Comprehensive Benchmark Study'.
DOI: 10.6084/m9.figshare.21432603.v3
title: Concrete_Data.xlsx

description: Concrete proportioning and compression resistance strength
DOI: 10.6084/m9.figshare.23939541.v1
title: LYM.rds

description: Lymphoid single-cell atlas of cigarette smoking lung. Seurat obj.
DOI: 10.17632/6cf687vhgx
title: Koo&Park_ The image files of future projections for five evergreens

description: These are image files of the future projections for five plants, R. indica var. umbellate, N. sericea, I. integra, E. emarginata, and P. tobira predicted under combinations of climate changes (RCP 4.5 and RCP 8.5), land-use changes (SSP1 and SSP3) and dispersal capacity (no dispersal (ND), short-distance dispersal (SDD), long-distance dispersal (LDD), and full dispersal (FD)).