cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0p2ngf20m
title: Early social deprivation shapes neuronal programming of the social decision-making network in a cooperatively breeding fish

description: The early social environment an animal experiences may have pervasive
 effects on its behaviour. The Social Decision-Making network (SDMN),
 consisting of interconnected brain nuclei from the forebrain and midbrain,
 is involved in the regulation of behaviours during social interactions. In
 species with advanced sociality such as cooperative breeders, offspring
 are exposed to a large number and a great diversity of social interactions
 every day of their early life, which may have life-long consequences on
 the development of several neurophysiological systems within the SDMN,
 although these effects are largely unknown. We studied these life-long
 effects in a cooperatively breeding fish, Neolamprologus pulcher, focusing
 on the expression in the SDMN of genes involved in the monoaminergic and
 stress response systems. N. pulcher fry were raised until an age of two
 months either with their parents, subordinate helpers and same clutch
 siblings (+F), or with same clutch siblings only (-F). Analysis of the
 expression of glucocorticoid receptor (GR), mineralcorticoid receptors
 (MR), corticotropin releasing factor (CRF), dopamine receptors 1 and 2,
 serotonin transporter (SERT) and DNA methyltransferase I (DNMT1) genes
 showed that early social experiences altered the neurogenomic state of the
 preoptic area (POA) of the hypothalamus. The dopamine receptor 1 gene was
 up-regulated in the POA of -F fish, compared to +F fish. -F fish also
 showed up-regulation of GR1 expression in the dorsal medial telencephalon
 (homologous to the basolateral amygdala). Our results suggest that early
 social environment has life-long effects on the development of several
 neurophysiological systems within the SDMN. --
description: The supporting information file contains an explanation of each
 variable in the dataset. NA = values not available.
 Information regarding the methods and analysis are available in the
 manuscript refered above.
DOI: 10.5061/dryad.w6m905qp0
title: Interviews from field research in Rio de Janeiro State - Brazil

description: This paper presents a case study on organic agriculture at Região Serrana
 Fluminense, Rio de Janeiro State, Brazil. We sought to understand what was
 the role of organic farming, and if it can be considered as an aggregating
 element between different kind of people or groups who were located in the
 same region. The methodology used to carry out this investigation was
 based on the concept of the Rural Network, which enabled us to comprehend
 the articulations and connections that comprise the organic agriculture
 circuit in the mountains of this specific region.
description: Using the Rural web methodology, we developed a series of
 questions for the script so that we could communicate with the farmers. We
 then transcribed the responses
description: I supressed the names of people interviewed but I didn't
 supress the farmers' location. The location of all
 organic farmers in Brazil are public, they have their farms and their
 production regularized in the Ministry of Agriculture and also with the
 ABIO (association of Organic Agriculture in RJ) so their location are
 public. Taking that information off the interviews would make the datasets
 very confusing and difficult to understand.
DOI: 10.5061/dryad.ns1rn8prz
title: Selection data: Reproductive success and morphology

description: Alternative reproductive tactics (ARTs) have provided valuable insights
 into how sexual selection and life history tradeoffs can lead to variation
 within a sex. However, the possibility that tactics may constrain
 evolution through intralocus tactical conflict is rarely considered. In
 addition, when intralocus conflict has been considered, the focus has
 often been on the genetic correlations between the ARTs, while evidence
 that the ARTs have different optima for associated traits and that at
 least one of the tactics is not at its optima is often missing. Here we
 investigate selection on three traits associated with the alternative
 reproductive tactics in the swordtail fish Xiphophorus multilineatus; body
 size, body shape and the sexually selected trait for which these fishes
 were named, sword length (elongation of the caudal fin). All three traits
 are tactically dimorphic, with courter males being larger, deeper bodied
 and having longer swords, and the sneaker males being smaller, more
 fusiform and having shorter swords. Using measures of reproductive success
 in a wild population we calculated selection differentials, linear and
 quadratic gradients, demonstrate that the tactics have different optima
 and at least one of the tactics is not at its optima for body size and
 sword length. Our results provide the first evidence of selection in the
 wild on the sword, an iconic trait for sexual selection. In addition,
 given the high probability that these traits are genetically correlated to
 some extent between the two tactics, our study suggests that intralocus
 tactical conflict is constraining both body size and the sword from
 reaching their phenotypic optima. We discuss the importance of considering
 the role of intralocus conflict in the evolution of tactical dimorphism,
 how this conflict can be present despite tactical dimorphism, and how it
 is important to consider this conflict when explaining not only variation
 within a species but differences across species as well.
DOI: 10.5061/dryad.ghx3ffbn8
title: Middle Ordovician (middle Darriwilian) Archaeospicularia and Entactinaria (radiolarians) from the Table Cove Formation, Piccadilly Quarry, western Newfoundland, Canada

description: New, distinctive, well preserved and previously undescribed constituents
 of a Middle Ordovician (middle Darriwilian, Dw2) radiolarian assemblage
 from the Table Cove Formation in Newfoundland are described.
 Three-dimensional X-ray micro-computed tomography (μ-CT) facilitates
 detailed examination of key specimens revealing hitherto unknown details
 of the internal morphologies of key lower Paleozoic taxonomic groups
 amongst which a lack of knowledge has previously impeded resolution of
 higher taxonomic rankings.  Twenty-seven archaeospiculid and
 entactinarian taxa are described and illustrated including six new
 species: Westernbrookia polygonata n.
 sp., Neopalaeospiculum piccadilliensis n.
 sp., Ramuspiculum laxum n.
 sp. Spongentactinianazarovi n.
 sp., Aspiculum irregulare n.
 sp., Nyfrieslandia ramosissima n.
 sp.,  The investigation extends the
 known  ranges of
 the species: Pararcheoentactinia reedae Won and
 Iams 2002, Sphaeroentactinia robusta Won,
 2015, Varispiculum ectospiculatum Won
 2015, and Svalbardospiculum multifurcatum (Won,
 Iams and Reed) 2005, together with the
 genus Echidnina to the mid-Darriwilian.
description: SEM imagery acquired with a Hitachi TM3030 desktop SEM
 μ-CT imaging acquired with a Xradia Versa 500 scanner
 imagery processed using Avizo® 9.4 software for 3D visualization
 and data analysis.
DOI: 10.5061/dryad.ghx3ffbn9
title: Global oil palm map

description: This report has been written by the IUCN Oil Palm Task Force in response
 to IUCN Resolution WCC-2016-Res-061-EN requesting “a situation analysis of
 the implications for biodiversity conservation from the expansion of oil
 palm, and to review and define best practices in the industry”. The
 Situation Analysis primarily focuses on oil palm in the context of
 biodiversity conservation based on literature published before 31 January
 2018, and aims to provide a more constructive pathway to addressing
 sustainability challenges in the palm oil industry. A draft version of
 this report was reviewed by 43 external reviewers from non-governmental
 organizations, academic institutions and people working in the palm oil
 industry, who provided some 600 comments that were then incorporated into
 a revised version. This report does not assess the social and economic
 implications of palm oil production and expansion but will refer to these
 when they are likely to have an impact on biodiversity conservation.
 Through identification of key knowledge gaps, the Situation Analysis will
 also provide direction to the Oil Palm Task Force in terms of seeking to
 address these knowledge gaps in the remainder of the 2017-2020
 Quadrennium.
description: We developed a<i> </i>map showing the global extent of industrial oil palm plantations following a three-steps procedure. First, we identified the top 29 palm oil producer countries based on FAO statistics of harvested area. Second, we carried out a literature review of published studies that have mapped industrial oil palm plantations, and compiled this information into a Geographic Information System. Third, we complemented this analysis for 13 countries, where no maps were available. For these thirteen countries, we delineated the boundaries of industrial using cloud-free LANDSAT mosaics acquired in 2017, created in Google Earth Engine.   We declared an area <i>planted </i>(the land is either already planted or under development), the moment we observed large rectangular elements, long linear boundaries, and distinctive grid- or contour-planting patterns appear on our images. These planting patterns characterize industrial plantations. They are easily detected by the human eye, but are difficult to capture with computer codes. Therefore, we delineated the boundaries of the planted areas (or under development) using a visual, expert-based interpretation method. We also employed maps of oil-palm concessions that have entered the public sphere to distinguish young oil-palm from other types of industrial plantations.
DOI: 10.5061/dryad.d51c5b02h
title: Intraprocedural angiographic signs observed during endovascular thrombectomy in patients with acute ischemic stroke: A systematic review

description: There are three PDF files in this dataset. They are supplementary data of
 the paper "Intraprocedural angiographic signs observed during
 endovascular thrombectomy in patients with acute ischemic stroke: A
 systematic review". Tables e1-e3 provide detailed literature search
 strategy and study selection. Table e4 provides characteristics
 of included studies and quality assessment. Table e5-e7
 provide summary of the main results with statistical significance
 levels of the included studies.  
description: There are three PDF files in this dataset. They are supplementary
 data of the paper "Intraprocedural angiographic signs observed during
 endovascular thrombectomy in patients with acute ischemic stroke: A
 systematic review". Tables e1-e3 provide detailed literature search
 strategy and study selection. Table e4 provides characteristics of
 included studies and quality assessment. Table e5-e7 provide summary of
 the main results with statistical significance levels of the included
 studies.
DOI: 10.5061/dryad.2z34tmpks
title: Automatic radioisotope manipulation for small amount of nuclear medicine using an EWOD device with a dimple structure

description: Delicate animal experiments and microdose clinical trials using
 short-lived radioisotopes require rapid preparation with high accuracy and
 careful attention to safety within a limited timeframe. We have developed
 an open-style electrowetting on dielectric device containing dimple
 structures for the rapid preparation of radiolabelled reagents. The device
 was demonstrated by automatic preparation of a 99mTc-DTPA with high
 chelation efficiency (99.7 ± 0.13%). Additionally, we demonstrated the
 single photon emission computed tomography (SPECT)/Computed tomography
 (CT) imaging of mouse kidney using the 99mTc-DTPA prepared with the EWOD
 device. The obtained organ tomographic images were sufficient for the
 evaluation of mouse models for specific diseases. These results indicate
 that manual radiolabelling for small amount of nuclear medicine can be
 replaced by a process using the proposed EWOD device as a human error
 reduction technique.
DOI: 10.5061/dryad.tmpg4f4xs
title: Unburnt habitat patches are critical for survival and in situ population recovery in a small mammal after fire

description: Fire drives animal population dynamics across many ecosystems. Yet, we
 still lack an understanding of how most species recover from fire and the
 effects of fire severity and patchiness on recovery processes. This
 information is crucial for fire-mediated biodiversity conservation,
 particularly as fire regimes change globally. We conducted an experiment
 to test whether post-fire recovery is driven by in situ survival or
 recolonisation, and to determine whether this varies with fires of
 increasing percentage area burnt (burn cover) and severity. We used the
 pale field rat (Rattus tunneyi) as a model, because it represents the
 extinction process for a suite of mammal species suffering population
 collapse across Australia’s northern savannas. Our treatments spanned a
 gradient from patchy, low severity fires (simulating early-dry season
 management burns) to thorough, high severity fires (simulating wildfires).
 We performed capture-mark-recapture, vegetation and aerial surveys before,
 six weeks after and one year after fire. Six weeks after fire, pale field
 rats were only captured in unburnt patches of vegetation, and capture
 rates were proportional to the amount of unburnt habitat. One year later,
 both vegetation and pale field rat populations recovered across all sites.
 However, population recovery after low severity fires was likely achieved
 through in situ survival and reproduction in unburnt micro-refuges,
 compared to recolonisation driving recovery after high severity fires.
 Synthesis and applications. Pale field rat persistence is strongly
 dependent on the retention of unburnt habitat patches within fire affected
 areas. Management strategies that increase micro-refugia within burnt
 areas may facilitate pale field rat population recovery. Globally,
 building recovery mechanisms into fire management will be vital for
 supporting the long-term persistence of fire-affected species.
description: All data, analyses and R code are documented in the READ_ME and
 word documents provided. 
description: <strong>R.tunneyi.FireExperiment_READ_ME.txt</strong> Read me document detailing datasets.   <strong>Prelim_Supp_R_code.docx</strong> Full R code and documentation for preliminary analyses.   <strong>Full_R_code.docx</strong> Full R code and documentation for all analyses in manuscript.   <strong>SECR</strong> Recapture data used for supplementary SECR analysis, to determine if capture rate approximates abundance.   <strong>Patchiness_Index.xlsx</strong> Data/calculation of patchiness index.   <strong>Recaptures_per_Site.csv</strong> Capture-mark-recapture data.   <strong>Trap_Autocorrelation.csv</strong> Data for preliminary trap spatial autocorrelation analysis.   <strong>Trap_Data.csv</strong> Capture data and trap/site meta-data over three trapping sessions.   <strong>Trap_Data_Sex_Age.csv</strong> Capture data and trap/site meta-data over three trapping sessions, split into sex and age.   <strong>Veg_Point_Intercept_Data.csv</strong> Vegetation survey data.
DOI: 10.5061/dryad.wdbrv15nb
title: Mid to late-Holocene palynomorph, charcoal and sediment data from three middle and high-altitude sediment cores from the Kashmir Valley

description: The Kashmir Valley in the Western Himalayas is situated at the
 intersection between the summer monsoon driven environments of South Asia
 and the westerly dominated Central Asia. This geography positions the
 Kashmir Valley as an environmenal niche suitable for exploring the
 long-term development of agro-pastoralist ecology now prevalent thoughout
 the Inner Asian mountain ranges. This dataset comprises pollen, fungal
 spore, charcoal, sediment particle size and magnetic susceptibility
 records from three mid- and high-altitude meadows in the west of the
 Kashmir Valley, covering a period of roughly the last 4500 years.
 Variability in indicator pollens and spores, charcoal and sediment size in
 the dataset may be indicative of localised land-use and modification by
 agro-pastoralists, while other proxy data may reflect broader patterns of
 regional environmental change.
description: See included Spate_2021_Kashmir_Cores_README.txt for descriptions
 of field sampling, lab extraction and data processing.
description: Pollen, fungal spore and charcoal data are presented as absolute
 abundances. Processed sediment data as % and geometric
 measures. Magnetic susceptibility as dimensionless
 measurements in SI.
DOI: 10.15468/dl.gukca5
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Daniellia ogea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 78 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002765-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.hdr7sqvh6
title: Data from: Predator performance and fitness Is dictated by herbivore prey type plus indirect effects of their host plant

description: Animals, including herbivores and predators, use diet-mixing to balance
 their macro- and micronutrient intake. Recent work demonstrated that lady
 beetles fed only pea aphids from fava beans had reduced fitness caused by
 a deficiency of dietary sterols. However, beetles redressed this deficit
 by eating fava bean leaves. In the current study we
 used Coccinella septempunctata as a model to test the
 hypotheses that pea aphids are a poor sterol resource independent of their
 host plant, and that fava beans produce low quality prey regardless of
 aphid species. Additionally, we tested the reproductive rescue capacity of
 alfalfa and barley foliage compared to fava, and profiled the sterols of
 phloem exudates, foliage, and aphids reared on these different hosts.
 Beetle fecundity and egg viability was significantly better when provided
 pea aphids reared on alfalfa (compared to fava beans) and green peach
 aphids reared on fava plants. Alfalfa and barley leaves were not consumed
 by beetles and did not support beetle reproduction. The sterol profile of
 aphids largely reflected their host plant phloem. However, green peach
 aphids from fava acquired 125-times more sterol than pea aphids from fava.
 Our findings show how the sterol content of different host-plants can
 affect the third trophic level. Our results suggest that 1) prey quality
 varies depending on prey species, even when they occur on the same plant,
 2) plant species can mediate prey quality, 3) host plant-mediated effects
 on prey quality partially drive omnivory, and 4) diet-mixing benefits
 growth and reproduction by redressing micronutrient deficits.
DOI: 10.5061/dryad.cnp5hqc42
title: Leaf silicification provides herbivore defence regardless of the extensive impacts of water stress

description: Altered precipitation patterns due to climate change are likely to impose
 water-deficit stress in plants resulting in changes to specific leaf mass,
 leaf water content and chemical defences that may impact herbivorous
 arthropods. Grasses, in particular, accumulate large concentrations of
 silicon (Si) which provides physical defence against herbivores. Although
 Si uptake by plants may be affected by water availability, very few
 studies have investigated the combined effect of water-deficit stress and
 Si on insect herbivore performance. We grew tall fescue (Festuca
 arundinacea Schreb.) hydroponically, with and without Si, and half of the
 plants were treated with 20% polyethylene glycol (PEG) to impose osmotic
 stress. Eleven leaf traits (physiological, chemical and structural) were
 measured, silicified phytoliths on the leaf surface were visualised using
 scanning electron microscopy (SEM) in conjunction with X-ray mapping, and
 plants were exposed to a chewing insect herbivore (Helicoverpa armigera
 Hübner (Lepidoptera: Noctuidae)). Although osmotic stress was associated
 with changes to leaf physiological and chemical traits, including
 increased specific leaf mass, decreased leaf relative water content and
 increased leaf nitrogen (N), there was no significant effect on H.
 armigera relative growth rate (RGR). However, Si reduced RGR of H.
 armigera by 80-98%, while generating few changes to physiological and
 chemical leaf traits. Instead, the decline in RGR with Si was associated
 with changes to leaf structural traits, in particular, a greater density
 of silicified phytoliths on the leaf surface. Comparison of effect sizes
 indicated that leaf traits were primarily affected by osmotic stress but
 not Si, and that herbivore RGR was strongly negatively affected by Si but
 not osmotic stress. There was no interactive effect between the osmotic
 stress and Si treatments on H. armigera RGR or plant traits except for
 leaf nitrogen and phenolic concentrations. This study provides further
 support that Si may prove to be beneficial to plants against chewing
 insect pests and remains robust regardless of water-deficit stress
 conditions.
description: Data associated with publication: Vandegeer
 RK, Cibils-Stewart X, Wuhrer R, Hartley SE, Tissue DT, Johnson SN (2021)
 Leaf silicification provides herbivore defence regardless of the extensive
 impacts of water stress. Functional Ecology.
 Files:
 Vandegeer_2021_FuncEcol_dataset.csv
 README_Vandegeer_2021_FuncEcol.csv
DOI: 10.5061/dryad.wpzgmsbm9
title: Data from: The thermal environment at fertilisation mediates adaptive potential in the sea

description: Additive genetic variation for fitness at vulnerable life stages governs
 the adaptive potential of populations facing stressful conditions under
 climate change, and can depend on current conditions as well as those
 experienced by past stages or generations. For sexual populations,
 fertilisation is the key stage that links one generation to the next, the
 effects of fertilisation environment on adaptive potential at the
 vulnerable stages that then unfold during development are rarely
 considered, despite climatic stress posing risks for gamete function and
 fertility in many taxa and external fertilisers especially. Here, we
 develop a simple fitness landscape model exploring the effects of
 environmental stress at fertilisation and development on adaptive
 potential in early life. We then test our model with a quantitative
 genetic breeding design exposing family groups of a marine external
 fertiliser, the tubeworm Galeolaria caespitosa, to a factorial
 manipulation of current and projected temperatures at fertilisation and
 development. We find that adaptive potential in early life is
 substantially reduced, to the point of being no longer detectable, by
 genotype-specific carryover effects of fertilisation under projected
 warming. We interpret these results in light of our fitness landscape
 model, and argue that the thermal environment at fertilisation deserves
 more attention than it currently receives when forecasting the adaptive
 potential of populations confronting climate change.   
description: # The thermal environment at fertilisation mediates adaptive potential in
 the sea
 [https://doi.org/10.5061/dryad.wpzgmsbm9](https://doi.org/10.5061/dryad.wpzgmsbm9) ## Description of the data and file structure #### File: evo\_letters\_2021\_data.csv **Description:**  Data shows survival of larvae at different temperatures and the relatedness of theses larvae. ##### Variables * Animal= ID of individual animal  * Block= the experimental block this animal was tested in * Sire = sure of each animal  * Dam =dam of each animal  * Fam= parental combination for each animal  * Fert = fertilization temperature (C - cold , H - hot) * Devo= developmental temperature (C - cold , H - hot) * Env = combination of fert and Devo * Rep= replicate  * Embryo = numbers of embryos in each rep * Hatching= numbers of surviving embryos per rep * Survival= hatching/ embryo #### File: evo\_letters\_2021\_code.R