cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.aukytg
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myriophyllum spicatum",
 "HasCoordinate is true",
 "Country is Namibia"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046516-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgtsdz
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenodontia, Crocodylia, Squamata, Testudines)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-105 -37.5,-97.5 -37.5,-97.5 -30,-105 -30,-105 -37.5))"
 ]
}

 The dataset includes 35 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046513-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.et88uy
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((85.41839 56.28902,85.44924 56.28902,85.44924 56.30429,85.41839 56.30429,85.41839 56.28902))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 154 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046515-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14980026
title: Swiss data quality: augmenting CAMELS-CH with isotopes, water quality, agricultural and atmospheric chemistry data

description: Check out the paper here (published at Nature Scientific Data)

CAMELS-CH-Chem is an extension of the CAMELS-CH dataset (Catchment Attributes and Meteorology for Large-sample Studies in Switzerland). It adds over 40 aggregated water quality parameters for 115 Swiss catchments from 1981 to 2020. The dataset includes time series data for more than 30 stream water chemistry variables, with hourly and daily measurements of water temperature, dissolved oxygen, pH, and electrical conductivity. It also provides (bi)monthly measurements for parameters like alkalinity (HCO₃), ammonium, calcium, chloride, dissolved and total organic carbon, dissolved reactive phosphorus, total filtered phosphorus, total hardness, total nitrogen, total phosphorus, nitrate, nitrite, potassium, magnesium, sodium, silica, and sulfate. Regarding catchment aggregated data, the dataset includes (bi)monthly stream and rainwater isotope data (deuterium and oxygen-18). Each catchment also has annual land cover data, agricultural information (crop types and livestock density), and atmospheric deposition levels of NO₃, NH₄, NH₃, NO₂, and total inorganic nitrogen.

Updates



19 July 2025: version 1.0 



General: 



Version of the official paper release.



We updated the units of some variables in the following README files:



 "/stream_water_chemistry/interval_samples/nawa_fracht/README.pdf" 

 "/stream_water_chemistry/interval_samples/nawa_trend/README.pdf" 








20 June 2025: version 0.2



General:



Added the folder additional_data_from_studies, which contains a non-exhaustive overview of previous studies conducted in Switzerland with published water quality datasets covering nested catchments within the 115 CAMELS-CH-Chem dataset.

Added a "readme.pdf" file to each subfolder, providing detailed information about the variables contained in each file.
DOI: 10.5281/zenodo.16158375
title: Swiss data quality: augmenting CAMELS-CH with isotopes, water quality, agricultural and atmospheric chemistry data

description: Check out the paper here (published at Nature Scientific Data)

CAMELS-CH-Chem is an extension of the CAMELS-CH dataset (Catchment Attributes and Meteorology for Large-sample Studies in Switzerland). It adds over 40 aggregated water quality parameters for 115 Swiss catchments from 1981 to 2020. The dataset includes time series data for more than 30 stream water chemistry variables, with hourly and daily measurements of water temperature, dissolved oxygen, pH, and electrical conductivity. It also provides (bi)monthly measurements for parameters like alkalinity (HCO₃), ammonium, calcium, chloride, dissolved and total organic carbon, dissolved reactive phosphorus, total filtered phosphorus, total hardness, total nitrogen, total phosphorus, nitrate, nitrite, potassium, magnesium, sodium, silica, and sulfate. Regarding catchment aggregated data, the dataset includes (bi)monthly stream and rainwater isotope data (deuterium and oxygen-18). Each catchment also has annual land cover data, agricultural information (crop types and livestock density), and atmospheric deposition levels of NO₃, NH₄, NH₃, NO₂, and total inorganic nitrogen.

Updates



19 July 2025: version 1.0 



General: 



Version of the official paper release.



We updated the units of some variables in the following README files:



 "/stream_water_chemistry/interval_samples/nawa_fracht/README.pdf" 

 "/stream_water_chemistry/interval_samples/nawa_trend/README.pdf" 








20 June 2025: version 0.2



General:



Added the folder additional_data_from_studies, which contains a non-exhaustive overview of previous studies conducted in Switzerland with published water quality datasets covering nested catchments within the 115 CAMELS-CH-Chem dataset.

Added a "readme.pdf" file to each subfolder, providing detailed information about the variables contained in each file.
DOI: 10.15468/dl.nz9e6s
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Poa alpina"
 ]
}

 The dataset includes 65 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046518-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28208822
title: Single Atom Activated Multi-stage Active Sites for Thoroughgoing Sodium Utilization

description: Source data for the plots in all figures in both main figures and SI figures.
DOI: 10.6084/m9.figshare.28208822.v1
title: Single Atom Activated Multi-stage Active Sites for Thoroughgoing Sodium Utilization

description: Source data for the plots in all figures in both main figures and SI figures.
DOI: 10.15468/dl.awbzbg
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Oxytropis hirsutiuscula"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046519-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqat4d
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Elaphurus davidianus"
 ]
}

 The dataset includes 183 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046521-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yryqgx
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenodontia, Crocodylia, Squamata, Testudines)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-112.5 -37.5,-105 -37.5,-105 -30,-112.5 -30,-112.5 -37.5))"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046522-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9phy6f
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Stipa orientalis"
 ]
}

 The dataset includes 44 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046520-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28943891
title: A high-quality Chromosome-level genome assembly and annotation of Anqing Six-end-white pig (Sus scrofa)

description: the protein-coding gene annotation, non-coding RNA prediction, and repeat annotation of Anqing Six-end-white pig genome
DOI: 10.6084/m9.figshare.28943891.v1
title: A high-quality Chromosome-level genome assembly and annotation of Anqing Six-end-white pig (Sus scrofa)

description: the protein-coding gene annotation, non-coding RNA prediction, and repeat annotation of Anqing Six-end-white pig genome
DOI: 10.5281/zenodo.17298546
title: Hubble Tension Resolution — Full Reproducibility Dataset (Expanded Data Record)

description: This expanded reproducibility record presents the complete data and computational framework underlying the paper “Resolving the Hubble Tension Through Systematic Correlation Analysis” (Jeffrey, 2025).It provides every data table, correlation matrix, and analysis script used in the study that reconciles local distance-ladder and early-universe measurements of the Hubble constant (H₀).

The dataset integrates 21 independent cosmological probes — including Cepheid, TRGB, SBF, lensing, BAO, and CMB constraints — through a unified covariance-weighted analysis.Systematic corrections applied to the local distance-ladder groups (A, B, C) yield a corrected local value of H₀ = 69.9 ± 0.8 km s⁻¹ Mpc⁻¹, reducing the previous 5.9σ tension to ≈ 2.5σ, fully consistent with ΛCDM predictions.

This PDF release is a static, human-readable record of the complete dataset and analysis logic, including all numerical tables (441-row correlation matrix), applied systematic corrections, and code listings.A fully executable reproducibility pack — containing identical materials in machine-readable form — will follow as a subsequent Zenodo upload.

 

Keywords: cosmology, Hubble tension, H₀, covariance, systematics, reproducibility

License: CC‑BY‑4.0

 

Citation:

 

Daniel Jeffrey. (2025). Hubble Tension Resolution — Lab‑Grade Reproducibility Package. Zenodo.

DOI: Initial Priority Preprint - https://doi.org/10.5281/zenodo.17260670
DOI: 10.5281/zenodo.17403920
title: Hubble Tension Resolution — Full Reproducibility Dataset (Expanded Data Record)

description: This expanded reproducibility record presents the complete data and computational framework underlying the paper “Resolving the Hubble Tension Through Systematic Correlation Analysis” (Jeffrey, 2025).It provides every data table, correlation matrix, and analysis script used in the study that reconciles local distance-ladder and early-universe measurements of the Hubble constant (H₀).

The dataset integrates 21 independent cosmological probes — including Cepheid, TRGB, SBF, lensing, BAO, and CMB constraints — through a unified covariance-weighted analysis.Systematic corrections applied to the local distance-ladder groups (A, B, C) yield a corrected local value of H₀ = 69.9 ± 0.8 km s⁻¹ Mpc⁻¹, reducing the previous 5.9σ tension to ≈ 2.5σ, fully consistent with ΛCDM predictions.

This PDF release is a static, human-readable record of the complete dataset and analysis logic, including all numerical tables (441-row correlation matrix), applied systematic corrections, and code listings.A fully executable reproducibility pack — containing identical materials in machine-readable form — will follow as a subsequent Zenodo upload.

 

Keywords: cosmology, Hubble tension, H₀, covariance, systematics, reproducibility

License: CC‑BY‑4.0

 

Citation:

 

Daniel Jeffrey. (2025). Hubble Tension Resolution — Lab‑Grade Reproducibility Package. Zenodo.

DOI: Initial Priority Preprint - https://doi.org/10.5281/zenodo.17260670
DOI: 10.15468/dl.4vnda9
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenodontia, Crocodylia, Squamata, Testudines)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-120 -37.5,-112.5 -37.5,-112.5 -30,-120 -30,-120 -37.5))"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046523-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8dnhwp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenodontia, Crocodylia, Squamata, Testudines)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-127.5 -37.5,-120 -37.5,-120 -30,-127.5 -30,-127.5 -37.5))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046524-251009101135966/datasets/export for details.
DOI: 10.5281/zenodo.17190663
title: Full SNP-gene association summary statistics in East Asian individuals

description: This repository includes all SNP-gene associations in the MAEC and MAEEA cohorts.

 

Reference: Jie, W. et al. In preparation.
DOI: 10.5281/zenodo.17190662
title: Full SNP-gene association summary statistics in East Asian individuals

description: This repository includes all SNP-gene associations in the MAEC and MAEEA cohorts.

 

Reference: Jie, W. et al. In preparation.
DOI: 10.15468/dl.cgfcu4
title: Occurrence Download

description: A dataset containing 518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "CoordinateUncertaintyInMeters is less than or equal to 500.0",
 "Country is Germany",
 "EndDayOfYear 141-182",
 "OccurrenceStatus is Present",
 "StartDayOfYear 141-182",
 "TaxonKey is Caprimulgus europaeus",
 "Year 1995-2025"
 ]
}

 The dataset includes 518 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046528-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6d4q24
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea purpurea",
 "HasCoordinate is true",
 "Country is Namibia"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046525-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.puduus
title: Occurrence Download

description: A dataset containing 14811 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Meles meles"
 ]
}

 The dataset includes 14811 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046526-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29554247
title: AIMD simulation data supporting Temperature-dependent mechanism evolution on RhRu₃Oₓ catalyst for acidic water oxidation

description: This is the AIMD data for the manuscript " Temperature-dependent mechanism evolution on RhRu3Ox catalyst for acidic water oxidation"
DOI: 10.6084/m9.figshare.29554247.v1
title: AIMD simulation data supporting Temperature-dependent mechanism evolution on RhRu₃Oₓ catalyst for acidic water oxidation

description: This is the AIMD data for the manuscript " Temperature-dependent mechanism evolution on RhRu3Ox catalyst for acidic water oxidation"
DOI: 10.6084/m9.figshare.29282240
title: Enhanced hybridization-proximity labeling discovers protein interactomes of single RNA molecules

description: This figshare project contains original microscopy images and image analysis code used in our study entitled "Enhanced hybridization-proximity labeling discovers protein interactomes of single RNA molecules". The ability of RNAs to associate with diverse protein partners and compartmentalize within specific subcellular environments is fundamental to eukaryotic cell function. Elucidating the protein interactomes of ribonucleoprotein assemblies containing a limited number of RNA molecules remains a considerable experimental challenge. We present an enhanced hybridization-proximity labeling (HyPro) technology for mapping the proteomes of endogenously expressed RNA microcompartments. By re-engineering the recombinant HyPro enzyme – the core of our labeling approach – and optimizing the efficiency and specificity of the proximity biotinylation reaction, we developed a method that identifies proteins associated with compact RNA-containing nuclear bodies, small clusters of pre-mRNAs at transcription sites, and, crucially, individual transcripts. When applied to C9orf72 RNA with expanded G4C2 hexanucleotide repeats, retained as single-molecule foci in the nuclei of amyotrophic lateral sclerosis (ALS) patient-derived induced pluripotent stem cells, our technology identified extensive interactions between mutant transcripts and disease-linked paraspeckle markers, as well as a specific set of pre-mRNA splicing factors. These findings highlight early RNA processing and localization defects in ALS that might contribute to this late-onset neurodegenerative disorder. Overall, our approach provides a powerful tool for profiling RNA-protein interactions, with strong potential to advance studies across the life sciences and biomedicine.
DOI: 10.6084/m9.figshare.29282240.v1
title: Enhanced hybridization-proximity labeling discovers protein interactomes of single RNA molecules

description: This figshare project contains original microscopy images and image analysis code used in our study entitled "Enhanced hybridization-proximity labeling discovers protein interactomes of single RNA molecules". The ability of RNAs to associate with diverse protein partners and compartmentalize within specific subcellular environments is fundamental to eukaryotic cell function. Elucidating the protein interactomes of ribonucleoprotein assemblies containing a limited number of RNA molecules remains a considerable experimental challenge. We present an enhanced hybridization-proximity labeling (HyPro) technology for mapping the proteomes of endogenously expressed RNA microcompartments. By re-engineering the recombinant HyPro enzyme – the core of our labeling approach – and optimizing the efficiency and specificity of the proximity biotinylation reaction, we developed a method that identifies proteins associated with compact RNA-containing nuclear bodies, small clusters of pre-mRNAs at transcription sites, and, crucially, individual transcripts. When applied to C9orf72 RNA with expanded G4C2 hexanucleotide repeats, retained as single-molecule foci in the nuclei of amyotrophic lateral sclerosis (ALS) patient-derived induced pluripotent stem cells, our technology identified extensive interactions between mutant transcripts and disease-linked paraspeckle markers, as well as a specific set of pre-mRNA splicing factors. These findings highlight early RNA processing and localization defects in ALS that might contribute to this late-onset neurodegenerative disorder. Overall, our approach provides a powerful tool for profiling RNA-protein interactions, with strong potential to advance studies across the life sciences and biomedicine.
DOI: 10.5281/zenodo.17400575
title: FOCCUS WP9 MS9.1 Applications prototype: ESC2 - 2.1.1 - Supporting the blue economy of Norwegian fjords

description: This Zenodo item contains example output derived from coastal application 2.1.1 (See FOCCUS D8.1), as proof of prototype development. The figures are example outputs of normalised vertical distributions of simulated viral agents that could potentially affect aquaculture. Five different release positions in the Hardangerfjord are used in this example.

The trajectory modeling framework OpenDrift is used on top of the Member State Coastal System Norkyst, the latter providing 3D ocean currents and hydrography. The PQ files are iused in the transport modeling. Norkyst is nested into the Copernicus Marine Service Arctic and Baltic regional forecasting systems.

All simulations are based on hypothetical scenarios. The results shown are preliminary, and hence no rights should be attributed to them.
DOI: 10.5281/zenodo.17400576
title: FOCCUS WP9 MS9.1 Applications prototype: ESC2 - 2.1.1 - Supporting the blue economy of Norwegian fjords

description: This Zenodo item contains example output derived from coastal application 2.1.1 (See FOCCUS D8.1), as proof of prototype development. The figures are example outputs of normalised vertical distributions of simulated viral agents that could potentially affect aquaculture. Five different release positions in the Hardangerfjord are used in this example.

The trajectory modeling framework OpenDrift is used on top of the Member State Coastal System Norkyst, the latter providing 3D ocean currents and hydrography. The PQ files are iused in the transport modeling. Norkyst is nested into the Copernicus Marine Service Arctic and Baltic regional forecasting systems.

All simulations are based on hypothetical scenarios. The results shown are preliminary, and hence no rights should be attributed to them.
DOI: 10.15468/dl.b2uptd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenodontia, Crocodylia, Squamata, Testudines)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-135 -37.5,-127.5 -37.5,-127.5 -30,-135 -30,-135 -37.5))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046529-251009101135966/datasets/export for details.
DOI: 10.5517/ccv6n6w
title: CCDC 780958: Experimental Crystal Structure Determination

description: Related Article: K.V.Turcheniuk, A.B.Rozhenko, I.V.Shevchenko|2011|Eur.J.Inorg.Chem.|2011|1762|doi:10.1002/ejic.201001192
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.