cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6275414.v1
title: Supplementary Material for: Associations of Current Wheeze and Body Mass Index with Perennial and Seasonal Allergic Rhinitis in Young Adults

description: <b><i>Background:</i></b> The coexistence of asthma and allergic rhinitis (AR) and its distinct association with obesity have been reported. However, few studies have differentiated the two types of AR, i.e., perennial (PAR) and seasonal AR (SAR), with regard to their associations with asthma and obesity. The aim of this study was to evaluate the coexistence of current wheeze and two types of AR and the impact of body mass index (BMI) on these two conditions in Japanese young adults. <b><i>Methods:</i></b> First-year students from Hokkaido University were enrolled into this study from 2011 to 2016. A questionnaire survey including the prevalence of current wheeze, PAR, and SAR every year for 11,917 nonsmoking young adults was conducted. The difference in the impact of current wheeze and BMI on these two types of AR was separately evaluated. <b><i>Results:</i></b> Although both PAR and SAR were significantly associated with current wheeze, the impact of these two AR types on current wheeze was different (OR for PAR = 2.46 vs. OR for SAR = 1.29). When we classified all of the subjects into 4 groups with or/and without the two types of AR, the prevalence of current wheeze was significantly higher in subjects with PAR than in those without PAR (<i>p</i> &lt; 0.001). However, the prevalence of current wheeze did not differ between subjects with or without SAR. Multinomial regression analyses showed that the association of wheeze with PAR and/or SAR was stronger compared to that of wheeze with SAR without PAR. The prevalence of PAR was not associated with BMI. Contrarily, a low BMI was significantly associated with a high SAR prevalence (<i>p</i> &lt; 0.05). <b><i>Conclusion:</i></b> Comparisons between PAR and SAR showed that the conditions are differentially associated with current wheeze and BMI.
DOI: 10.6084/m9.figshare.6275387
title: Microsatellite data : Laminaria ochroleuca

description: Microsatellite data used for genetic analysis in the study "Past climate changes and strong oceanographic barriers structured low latitude genetic relics for the golden kelp Laminaria ochroleuca" published in Journal of Biogeography.<br>When using this dataset please use the following citation:Assis, J., Serrão, E.A., Coelho, N.C., Tempera, F., Valero, M., Alberto, F. Past climate changes and strong oceanographic barriers structured low latitude genetic relics for the golden kelp Laminaria ochroleuca. Journal of Biogeography
DOI: 10.6084/m9.figshare.6275387.v2
title: Microsatellite data : Laminaria ochroleuca

description: Microsatellite data used for genetic analysis in the study "Past climate changes and strong oceanographic barriers structured low latitude genetic relics for the golden kelp Laminaria ochroleuca" published in Journal of Biogeography.<br>When using this dataset please use the following citation:Assis, J., Serrão, E.A., Coelho, N.C., Tempera, F., Valero, M., Alberto, F. Past climate changes and strong oceanographic barriers structured low latitude genetic relics for the golden kelp Laminaria ochroleuca. Journal of Biogeography
DOI: 10.6084/m9.figshare.6275387.v1
title: Microsatellite data of Laminaria ochroleuca used for genetic analysis

description: Microsatellite data of Laminaria ochroleuca used for genetic analysis in the study "Past climate changes and strong oceanographic barriers structured low latitude genetic relics for the golden kelp Laminaria ochroleuca" published in Journal of Biogeography.When using this dataset please use the following citation:Assis, J., Serrão, E.A., Coelho, N.C., Tempera, F., Valero, M., Alberto, F. Past climate changes and strong oceanographic barriers structured low latitude genetic relics for the golden kelp Laminaria ochroleuca. Journal of Biogeography
DOI: 10.6084/m9.figshare.6275342
title: Experimental data from How do microalgae perceive light in a high-rate pond? Towards more realistic Lagrangian experiments

description: Experimental data obtained in the Lagrangian experiment
DOI: 10.6084/m9.figshare.6275342.v1
title: Experimental data from How do microalgae perceive light in a high-rate pond? Towards more realistic Lagrangian experiments

description: Experimental data obtained in the Lagrangian experiment
DOI: 10.6084/m9.figshare.6275315
title: Lsm7 granules trigger stress granule formation in a pathway controlled by Sch9/ Ypk1, sphingolipids, and Ubi4

description: Quantification of SG formation in the mutants (ts library and SGA-V2) from high-content screenings
DOI: 10.6084/m9.figshare.6275312
title: Acoustic and Satellite Telemetry Studies on Marine Fish: 1986–2013

description: This dataset contains all references in the “Systematic Review of Acoustic Telemetry and Satellite Telemetry Based Studies” in Fetterplace (2018). The dataset contains 584 publications from 1986–2013. For the detailed systematic review methodology used to compile this dataset set see; <i>Appendix B: Systematic Review of Acoustic Telemetry and Satellite Telemetry Based Studies </i>in Fetterplace (2018). When using this dataset cite: Fetterplace, L.C. (2018). “The ecology of temperate soft sediment fishes: Implications for fisheries management and marine protected area design". Doctor of Philosophy Thesis, University of Wollongong.
DOI: 10.6084/m9.figshare.6275312.v1
title: Acoustic and Satellite Telemetry Studies on Marine Fish: 1986–2013

description: This dataset contains all references in the “Systematic Review of Acoustic Telemetry and Satellite Telemetry Based Studies” in Fetterplace (2018). The dataset contains 584 publications from 1986–2013. For the detailed systematic review methodology used to compile this dataset set see; <i>Appendix B: Systematic Review of Acoustic Telemetry and Satellite Telemetry Based Studies </i>in Fetterplace (2018). When using this dataset cite: Fetterplace, L.C. (2018). “The ecology of temperate soft sediment fishes: Implications for fisheries management and marine protected area design". Doctor of Philosophy Thesis, University of Wollongong.
DOI: 10.6084/m9.figshare.6275288
title: Systematic_Review_Library.enl

description: EndNote database of a systematic review on the educational impact of mini-clinical evaluation exercise (Mini-CEX) and direct observation of procedural skills (DOPS) and its association with implementation
DOI: 10.6084/m9.figshare.6275267
title: Supplementary Material for: Predictive Factors for the Long-Term Deterioration of Pulmonary Function in Interstitial Lung Disease Associated with Anti-Aminoacyl-tRNA Synthetase Antibodies

description: <b><i>Background:</i></b> Little has been reported on long-term pulmonary function trends among patients with interstitial lung disease associated with anti-aminoacyl-tRNA synthetase antibodies (ARS-ILD). <b><i>Objectives:</i></b> To clarify the factors predictive of progression in ARS-ILD based on patients’ initial clinical and radiological features. <b><i>Methods:</i></b> The clinical courses of 88 patients with &gt; 1 year of follow-up data on pulmonary function tests (PFTs) were retrospectively analyzed. Disease behavior was categorized into three groups: (1) improved or (2) worsened (defined as increases or decreases, respectively, of &gt; 10% in forced vital capacity and &gt; 15% in %diffusing capacity of lung carbon monoxide) or (3) stable based on PFT changes compared between 1-year results as the initial data and results at 3 years to assess the long-term course. <b><i>Results:</i></b> In the initial course of 75 patients with ARS-ILD who received anti-inflammatory therapy within 6 months after diagnosis, 48 patients (64.0%) improved and 6 patients (8.0%) worsened. The radiological patterns in the patients with ARS-ILD included nonspecific interstitial pneumonia (NSIP) in 46.7% and NSIP with organizing pneumonia overlap in 52.0% of the cases. One-third of the initially improved patients who worsened over the long-term course were assigned to the unstable group. By multivariate logistic analysis, middle lobe traction bronchiectasis was a significant predictive factor for the patients in the unstable group. <b><i>Conclusions:</i></b> Most patients with ARS-ILD receiving anti-inflammatory therapy had improved or remained stable in the first year. However, over the long-term course, some patients worsened despite their initial improvement. Even though the extent of the disease is limited, middle lobe traction bronchiectasis in ARS-ILD may be a useful predictor of poor long-term disease behavior.
DOI: 10.6084/m9.figshare.6275267.v1
title: Supplementary Material for: Predictive Factors for the Long-Term Deterioration of Pulmonary Function in Interstitial Lung Disease Associated with Anti-Aminoacyl-tRNA Synthetase Antibodies

description: <b><i>Background:</i></b> Little has been reported on long-term pulmonary function trends among patients with interstitial lung disease associated with anti-aminoacyl-tRNA synthetase antibodies (ARS-ILD). <b><i>Objectives:</i></b> To clarify the factors predictive of progression in ARS-ILD based on patients’ initial clinical and radiological features. <b><i>Methods:</i></b> The clinical courses of 88 patients with &gt; 1 year of follow-up data on pulmonary function tests (PFTs) were retrospectively analyzed. Disease behavior was categorized into three groups: (1) improved or (2) worsened (defined as increases or decreases, respectively, of &gt; 10% in forced vital capacity and &gt; 15% in %diffusing capacity of lung carbon monoxide) or (3) stable based on PFT changes compared between 1-year results as the initial data and results at 3 years to assess the long-term course. <b><i>Results:</i></b> In the initial course of 75 patients with ARS-ILD who received anti-inflammatory therapy within 6 months after diagnosis, 48 patients (64.0%) improved and 6 patients (8.0%) worsened. The radiological patterns in the patients with ARS-ILD included nonspecific interstitial pneumonia (NSIP) in 46.7% and NSIP with organizing pneumonia overlap in 52.0% of the cases. One-third of the initially improved patients who worsened over the long-term course were assigned to the unstable group. By multivariate logistic analysis, middle lobe traction bronchiectasis was a significant predictive factor for the patients in the unstable group. <b><i>Conclusions:</i></b> Most patients with ARS-ILD receiving anti-inflammatory therapy had improved or remained stable in the first year. However, over the long-term course, some patients worsened despite their initial improvement. Even though the extent of the disease is limited, middle lobe traction bronchiectasis in ARS-ILD may be a useful predictor of poor long-term disease behavior.
DOI: 10.6084/m9.figshare.6275243
title: Supplementary Material for: Outcomes of Single-Operator Cholangioscopy-Guided Lithotripsy in Patients with Difficult Biliary and Pancreatic Stones

description: <b><i>Background and Aims:</i></b> Endoscopic retrograde cholangiopancreatography is the preferred strategy for the management of biliary and pancreatic duct stones. However, difficult stones occur, and electrohydraulic (EHL) and laser lithotripsy (LL) have emerged as treatment modalities for ductal clearance. Recently, single-operator cholangioscopy was introduced, permitting the routine use of these techniques. We aimed to evaluate the clinical effectiveness of cholangioscopy-guided lithotripsy using LL or EHL in patients with difficult biliary or pancreatic stones. <b><i>Methods:</i></b> This is a prospective clinical study – conducted at two affiliated university hospitals – of 17 consecutive patients with difficult biliary and pancreatic stones who underwent single-operator cholangioscopy-guided lithotripsy using two techniques: holmium laser lithotripsy (HL) or bipolar EHL. We analyzed complete ductal clearance as well as the impact of the location and number of stones on clinical success and evaluated the efficacy of the two techniques used for cholangioscopy-guided lithotripsy and procedural complications. <b><i>Results:</i></b> Twelve patients (70.6%) had stones in the common bile duct/common hepatic duct, 2 patients (17.6%) had a stone in the cystic stump, and 3 patients (17.6%) had stones in the pancreas. Sixteen patients (94.1%) were successfully managed in 1 session, and 1 patient (5.9%) achieved ductal clearance after 3 sessions including EHL, LL, and mechanical lithotripsy. Eleven patients were successfully submitted to HL in 1 session using a single laser fiber. Six patients were treated with EHL: 4 patients achieved ductal clearance in 1 session with a single fiber, 1 patient obtained successful fragmentation in 1 session using two fibers, and 1 patient did not achieve ductal clearance after using two fibers and was successfully treated with a single laser fiber in a subsequent session. Complications were mild and were encountered in 6/17 patients (35.2%), including fever (<i>n</i> = 3), pain (<i>n</i> = 1), and mild pancreatitis (<i>n</i> = 1). <b><i>Conclusions:</i></b> Cholangioscopy-guided lithotripsy using LL or EHL in patients with difficult biliary or pancreatic stones is highly effective with transient and minimal complications. There is a clear need to further compare EHL and HL in order to assess their role in the success of cholangioscopy-guided lithotripsy.
DOI: 10.6084/m9.figshare.6275222
title: Supplementary Material for: Mindfulness-Based Attention Training Improves Cognitive and Affective Processes in Daily Life in Remitted Patients with Recurrent Depression: A Randomized Controlled Trial

description: Medicine
DOI: 10.6084/m9.figshare.6275219
title: Supplementary Material for: Modulation of Gamma Band Activity and Late Positive Potential in Patients with Chronic Depression after Psychodynamic Psychotherapy

description: Medicine
DOI: 10.6084/m9.figshare.6275204
title: Constructing Two-Level Designs by Concatenation of Strength-3 Orthogonal Arrays

description: Two-level orthogonal arrays of <i>N</i> runs, <i>k</i> factors, and a strength of 3 provide suitable fractional factorial designs in situations where many of the main effects are expected to be active, as well as some two-factor interactions. If they consist of <i>N</i>/2 mirror image pairs, these designs are fold-over designs. They are called even and provide at most <i>N</i>/2 − 1 degrees of freedom to estimate interactions. For <i>k</i> &lt; <i>N</i>/3 factors, there exist strength-3 designs that are not fold-over designs. They are called even-odd designs and they provide many more degrees of freedom to estimate interactions. For <i>N</i> ⩽ 48, attractive even-odd designs can be extracted from complete catalogs of strength-3 orthogonal arrays. However, for larger run sizes, no complete catalogs exist. To construct even-odd designs with <i>N</i> &gt; 48, we develop an algorithm for an optimal concatenation of strength-3 designs involving <i>N</i>/2 runs. Our approach involves column permutations of one of the concatenated designs, as well as sign switches of the elements of one or more columns of that design. We illustrate the potential of the algorithm by generating two-level even-odd designs with 64 and 128 runs involving up to 33 factors, because this allows a comparison with benchmark designs from the literature. With a few exceptions, our even-odd designs outperform or are competitive with the benchmark designs in terms of the aliasing of two-factor interactions and in terms of the available degrees of freedom to estimate two-factor interactions. Supplementary materials for the article are available online.
DOI: 10.6084/m9.figshare.6275204.v2
title: Constructing Two-Level Designs by Concatenation of Strength-3 Orthogonal Arrays

description: Two-level orthogonal arrays of <i>N</i> runs, <i>k</i> factors, and a strength of 3 provide suitable fractional factorial designs in situations where many of the main effects are expected to be active, as well as some two-factor interactions. If they consist of <i>N</i>/2 mirror image pairs, these designs are fold-over designs. They are called even and provide at most <i>N</i>/2 − 1 degrees of freedom to estimate interactions. For <i>k</i> &lt; <i>N</i>/3 factors, there exist strength-3 designs that are not fold-over designs. They are called even-odd designs and they provide many more degrees of freedom to estimate interactions. For <i>N</i> ⩽ 48, attractive even-odd designs can be extracted from complete catalogs of strength-3 orthogonal arrays. However, for larger run sizes, no complete catalogs exist. To construct even-odd designs with <i>N</i> &gt; 48, we develop an algorithm for an optimal concatenation of strength-3 designs involving <i>N</i>/2 runs. Our approach involves column permutations of one of the concatenated designs, as well as sign switches of the elements of one or more columns of that design. We illustrate the potential of the algorithm by generating two-level even-odd designs with 64 and 128 runs involving up to 33 factors, because this allows a comparison with benchmark designs from the literature. With a few exceptions, our even-odd designs outperform or are competitive with the benchmark designs in terms of the aliasing of two-factor interactions and in terms of the available degrees of freedom to estimate two-factor interactions. Supplementary materials for the article are available online.
DOI: 10.6084/m9.figshare.6275204.v1
title: Constructing Two-Level Designs by Concatenation of Strength-3 Orthogonal Arrays

description: Two-level orthogonal arrays of <i>N</i> runs, <i>k</i> factors and a strength of 3 provide suitable fractional factorial designs in situations where many of the main effects are expected to be active, as well as some two-factor interactions. If they consist of <i>N</i>/2 mirror image pairs, these designs are fold-over designs. They are called even and provide at most <i>N</i>/2 − 1 degrees of freedom to estimate interactions. For <i>k</i> &lt; <i>N</i>/3 factors, there exist strength-3 designs that are not fold-over designs. They are called even-odd designs and they provide many more degrees of freedom to estimate interactions. For <i>N</i> ≤ 48, attractive even-odd designs can be extracted from complete catalogs of strength-3 orthogonal arrays. However, for larger run sizes, no complete catalogs exist. In order to construct even-odd designs with <i>N</i> &gt; 48, we develop an algorithm for an optimal concatenation of strength-3 designs involving <i>N</i>/2 runs. Our approach involves column permutations of one of the concatenated designs, as well as sign switches of the elements of one or more columns of that design. We illustrate the potential of the algorithm by generating two-level even-odd designs with 64 and 128 runs involving up to 33 factors, because this allows a comparison with benchmark designs from the literature. With a few exceptions, our even-odd designs outperform or are competitive with the benchmark designs in terms of the aliasing of two-factor interactions and in terms of the available degrees of freedom to estimate two-factor interactions.
DOI: 10.6084/m9.figshare.6275189
title: Published estimates of global soil respiration

description: These data (and accompanying R script) were used to produce Figure 1 in Bond-Lamberty (2018) commentary in Earth's Future.
DOI: 10.6084/m9.figshare.6275189.v1
title: Published estimates of global soil respiration

description: These data (and accompanying R script) were used to produce Figure 1 in Bond-Lamberty (2018) commentary in Earth's Future.
DOI: 10.6084/m9.figshare.6275183
title: rawdata.zip

description: rawdata for paper publication
DOI: 10.6084/m9.figshare.6275183.v1
title: rawdata.zip

description: rawdata for paper publication
DOI: 10.6084/m9.figshare.6275150
title: Interprofessional collaboration and the care and management of type 2 diabetic patients in the Middle East: A systematic review

description: The World Health Organization has ranked the Middle East (ME) as the second most prevalent region globally for type 2 diabetes. Currently, treatment options initiated by physicians focus mainly on pharmaceuticals; however, lifestyle factors also have a tremendous impact on a patient’s wellness or illness. A potential solution to this issue is to use an interprofessional team approach when caring for this patient population. The purpose of this systematic review is to look at the present literature involving the use of an interprofessional team approach to the care and maintenance of people with type 2 diabetes in the ME. A PRISMA flow diagram demonstrates the authors’ literature search and screening process. The systematic review includes nine studies with mixed-methodologies performed in the Middle Eastern region in an outpatient or primary care setting, and demonstrates the use of interprofessional collaboration when providing care for type 2 diabetic patients. A meta-analysis was not included due to the heterogeneity of the studies; however, data analysis is discussed and results are demonstrated through an extraction tool developed by the authors based on The Cochrane Collaboration’s data collection form. The aim of this review is to construct meaning surrounding the use and effectiveness of this collaborative approach with the adult and geriatric Middle Eastern diabetic patient population. Recommendations include continued support from multiple healthcare professions, involving nurses, pharmacists, dietitians, and physicians to promote holistic and patient-centred-care leading to fewer type 2 diabetes complications and hospital admissions.
DOI: 10.6084/m9.figshare.6275150.v1
title: Interprofessional collaboration and the care and management of type 2 diabetic patients in the Middle East: A systematic review

description: The World Health Organization has ranked the Middle East (ME) as the second most prevalent region globally for type 2 diabetes. Currently, treatment options initiated by physicians focus mainly on pharmaceuticals; however, lifestyle factors also have a tremendous impact on a patient’s wellness or illness. A potential solution to this issue is to use an interprofessional team approach when caring for this patient population. The purpose of this systematic review is to look at the present literature involving the use of an interprofessional team approach to the care and maintenance of people with type 2 diabetes in the ME. A PRISMA flow diagram demonstrates the authors’ literature search and screening process. The systematic review includes nine studies with mixed-methodologies performed in the Middle Eastern region in an outpatient or primary care setting, and demonstrates the use of interprofessional collaboration when providing care for type 2 diabetic patients. A meta-analysis was not included due to the heterogeneity of the studies; however, data analysis is discussed and results are demonstrated through an extraction tool developed by the authors based on The Cochrane Collaboration’s data collection form. The aim of this review is to construct meaning surrounding the use and effectiveness of this collaborative approach with the adult and geriatric Middle Eastern diabetic patient population. Recommendations include continued support from multiple healthcare professions, involving nurses, pharmacists, dietitians, and physicians to promote holistic and patient-centred-care leading to fewer type 2 diabetes complications and hospital admissions.