cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14455088
title: paraliparis_holomelas_spades_01.fasta.gz
DOI: 10.5281/zenodo.14455089
title: paraliparis_holomelas_spades_01.fasta.gz
DOI: 10.6084/m9.figshare.c.3640112_d1
title: MOESM1 of Fire-severity effects on plant–fungal interactions after a novel tundra wildfire disturbance: implications for arctic shrub and tree migration

description: Additional file 1. Site descriptions for eight sampling sites grouped by fire-severity categories within the Anaktuvuk River Fire burn scar. We classified vegetation communities using the Viereck (1992) vegetation classification: 2C2A = open low scrub mixed shrub-sedge tussock tundra, 2C2H = open low scrub willow-sedge shrub tundra, 3A21 = mesic graminoid herbaceous sedge-birch tundra, 3A2D = mesic graminoid herbaceous tussock tundra, and 3A3 = wet graminoid herbaceous tundra. Fire-severity categories were assigned based on composite burn index and field descriptions.
DOI: 10.6084/m9.figshare.c.3640112_d5
title: MOESM6 of Fire-severity effects on plantâ  fungal interactions after a novel tundra wildfire disturbance: implications for arctic shrub and tree migration

description: Additional file 6. Description of final solutions for nonmetric multidimensional scaling ordinations of fungal composition for all seedlings and treatment x species combinations.
DOI: 10.6084/m9.figshare.c.3640112_d6
title: MOESM3 of Fire-severity effects on plantâ  fungal interactions after a novel tundra wildfire disturbance: implications for arctic shrub and tree migration

description: Additional file 3. Biological key showing ribotype ID, abundance, range of fungal ITS fragment lengths, associated OTU identity, and the best match description as reported in GenBank.
DOI: 10.6084/m9.figshare.c.3640112_d7
title: MOESM4 of Fire-severity effects on plantâ  fungal interactions after a novel tundra wildfire disturbance: implications for arctic shrub and tree migration

description: Additional file 4. Operational Taxonomic Units at 97Â % sequence similarity for fungi associated with seedlings inoculated with soils from the Anaktuvuk River Fire.
DOI: 10.6084/m9.figshare.c.3640136_d10
title: Additional file 8: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: 65 candidate orthologs among the six genomes. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d9
title: Additional file 13: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: 19 candidate NLPs of Pl. halstedii. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d11
title: Additional file 9: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: 11 orthologs among the downy mildew genomes. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d12
title: Additional file 17: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: Cystatin-like domain features among the different genomes. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d13
title: Additional file 23: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: Six orthologs of candidate RxLR-like proteins among the downy mildew genomes. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d14
title: Additional file 20: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: Candidate RxLR-like effectors of Pl. halstedii, predictions based on gene models. (XLSX 98Â kb)
DOI: 10.5281/zenodo.14206360
title: Data and code for publication: "Floristic Patterns in the Andes of Northern  Patagonia's Forests"

description: This dataset supports the study "Floristic Patterns in the Andes of Northern Patagonia's Forests" published in Vegetation Classification and Survey, whichinvestigates the relationship between plant communities and environmental drivers in the Andes of northwest Patagonia, Argentina. It also employs both expert-based and numerical classification methods to explore floristic patterns across steep gradients of aridity and temperature. The project provides a detailed dataset of 141 vegetation samples, using advanced statistical methods to define six distinct plant communities and their environmental drivers. It aims to refine existing vegetation classifications for the study area and inform conservation efforts.
DOI: 10.6084/m9.figshare.c.3640136_d17
title: Additional file 6: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: Five candidate orthologs among the nine genomes. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d18
title: Additional file 21: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: Candidate RxLR-like effectors of Pl. halstedii, predictions based on ORFs generated from the un-masked genome. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d19
title: Additional file 26: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: Gene expression values of down-regulated candidate RxLR-like proteins and CRNs of Pl. halstedii. (XLSX 65Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d21
title: Additional file 7: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: 77 candidate orthologs among the five genomes. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d22
title: Additional file 22: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: Proteins with positive score for WY-fold hidden Markov model. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d24
title: Additional file 3: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: Simple sequence repeats within the genome of Plasmophara halstedii . (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d23
title: Additional file 25: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: Gene expression values of up-regulated candidate RxLR-like proteins and CRNs of Pl. halstedii. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d25
title: Additional file 11: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: PMSE gene ids of Pl. halstedii. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3640136_d26
title: Additional file 24: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

description: Three orthologs of candidate RxLR-like proteins among the downy mildew and Phytophthora spp. genomes. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.c.3640139_d2
title: Additional file 29: of Ascertainment bias from imputation methods evaluation in wheat

description: Best linear unbiased predictors (BLUPs) for each genotype for spikes per square meter. (txt 9 kb)
DOI: 10.6084/m9.figshare.c.3640139_d5
title: Additional file 26: of Ascertainment bias from imputation methods evaluation in wheat

description: Best linear unbiased predictors (BLUPs) for each genotype for plant height. (txt 9 kb)
DOI: 10.6084/m9.figshare.c.3640142_d3
title: Additional file 1: of Ex vivo immunosuppressive effects of mesenchymal stem cells on Crohn’s disease mucosal T cells are largely dependent on indoleamine 2,3-dioxygenase activity and cell-cell contact

description: Mesenchymal stem cells with T cells from inflamed Crohn’s mucosa. Representative time-lapse imaging of a co-culture with bone marrow-derived mesenchymal stem cells of a healthy donor and T cells isolated from inflamed mucosa of a patient with Crohn’s disease. A dynamic and intense interaction is clearly evident mostly during the first 6 h, when the binding between these two cell populations is non-fixed but instead appears as a continuous attachment and detachment, after which a growing number of cells with morphological features of apoptosis (those with nuclear fragmentation and cellular swelling) and apoptotic bodies become evident. The images were serially recorded every 30 min for 12 h. Magnification: 100×. (ZIP 6780 kb)
DOI: 10.6084/m9.figshare.c.3640142_d2
title: Additional file 3: of Ex vivo immunosuppressive effects of mesenchymal stem cells on Crohnâ  s disease mucosal T cells are largely dependent on indoleamine 2,3-dioxygenase activity and cell-cell contact

description: Mesenchymal stem cells with T cells from healthy mucosa. Representative time-lapse imaging of a co-culture with bone marrow-derived mesenchymal stem cells of a healthy donor and T cells isolated from healthy mucosa of a control subject. The absence of any active interaction during the entire period of registration is clearly evident. The images were serially recorded every 30Â min for 12Â h. Magnification: 100Ă . (ZIP 9020 kb)
DOI: 10.5281/zenodo.14455120
title: paraliparis_copei_spades_01.fasta.gz
DOI: 10.5281/zenodo.14455121
title: paraliparis_copei_spades_01.fasta.gz
DOI: 10.6084/m9.figshare.c.3640169_d2
title: Additional file 6: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S6: FoHelis with multiple 5' termini. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.c.3640169_d3
title: Additional file 8: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S8: Number of protiens with a Rep and/or Hel domain found in queried species. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3640169_d4
title: Additional file 7: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S7: Putative gene capture events. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.c.3640169_d5
title: Additional file 2: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S1: FoHelis found in this study: position on the genome, start and end sequences, position of the predicted ORFs. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3640169_d6
title: Additional file 9: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S9: FoHeli-like sequences found in other species. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3640169_d7
title: Additional file 5: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S5: Copynumber estimate based on partial hits. (XLSX 272 kb)
DOI: 10.6084/m9.figshare.c.3640169_d8
title: Additional file 3: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S2, additional ORFs predicted within FoHeli termini. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3640169_d9
title: Additional file 4: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S3: non-autonomous FoHelis. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3640211_d2
title: MOESM1 of Handling missing items in the Hospital Anxiety and Depression Scale (HADS): a simulation study

description: Additional file 1: Appendix S1. Individual results.
DOI: 10.6084/m9.figshare.c.3640220_d1
title: Additional file 1: of A comprehensive and scalable database search system for metaproteomics

description: This file contains supplementary figures, methods, and four supplementary tables: Table S1. Data sources used for generation of ComPIL database. Table S2. Adenovirus 5 proteins identified by a ComPIL search of a human HEK293 sample. Table S3. List of proteomes used for generation of the â  46 proteomesâ   database. Table S4. Statistics summary of 3 technical replicates of 5 human fecal samples. (ZIP 1371Â kb)
DOI: 10.15468/dl.r3cx9x
title: Occurrence Download

description: A dataset containing 357761 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is Mammalia",
 "Year 2023-2023"
 ]
}

 The dataset includes 357761 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033881-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640229_d1
title: MOESM1 of Comparing the transcriptomes of embryos from domesticated and wild Atlantic salmon (Salmo salar L.) stocks and examining factors that influence heritability of gene expression

description: Additional file 1: Table S1. List of differentially-expressed 2d pathways. The complete list of differentially-expressed 2d pathways that were identified by an adjusted p â ¤ 0.1. Table S2. List of differentially-expressed transcripts. Details of the transcripts identified as differentially expressed between wild and domesticated embryos. Table S3. Essential genes of the differentially-expressed pathways. Gene members of pathways that contribute most to their differential expression. Table S4. Key genes of the differentially-expressed pathways.
DOI: 10.6084/m9.figshare.c.3640310_d1
title: Additional file 4: Table S2. of Expression of F-actin-capping protein subunit beta, CAPZB, is associated with cell growth and motility in epithelioid sarcoma

description: Results of the network analyses using protein profiles of CAPZB-regulated proteins in the ESX cells. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3640310_d2
title: Additional file 3: Table S1. of Expression of F-actin-capping protein subunit beta, CAPZB, is associated with cell growth and motility in epithelioid sarcoma

description: Results of the network analyses using protein profiles of CAPZB-regulated proteins in the VAESBJ cells. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3640316_d1
title: Additional file 1: Table S1. of Decoding breast cancer tissueâ  stroma interactions using species-specific sequencing

description: Fisherâ  s exact test for count data (R). (XLSX 10 kb)
DOI: 10.15472/pxfkdm
title: Linea Base Reserva Natural Salamandra de los Yariguíes

description: Este conjunto de datos incluye 1911 registros de acuerdo con la metodología de muestreo realizada por Campo Capital para el levantamiento de línea base de biodiversidad de los predios Llano de Plata, Guayabal y la Rinconada, los cuales conforman la Reserva Natural Salamandra de los Yariguíes en Socorro, Santander. Dichos registros se tomaron entre enero y agosto del 2024 y se encuentran agrupados en dos clases (mamíferos y aves), 13 órdenes y 22 familias.
DOI: 10.6084/m9.figshare.c.3640316_d2
title: Additional file 6: Table S5. of Decoding breast cancer tissueâ  stroma interactions using species-specific sequencing

description: Optimization of S3 parameters. (XLS 65 kb)
DOI: 10.6084/m9.figshare.c.3640316_d3
title: Additional file 7: Table S6. of Decoding breast cancer tissueâ  stroma interactions using species-specific sequencing

description: Gene Ontology. (XLSX 270 kb)
DOI: 10.6084/m9.figshare.c.3640316_d5
title: Additional file 2: Table S2. of Decoding breast cancer tissueâ  stroma interactions using species-specific sequencing

description: p-values and FDR from SAMlike_test_on_rpkms.py. (XLSX 14232 kb)
DOI: 10.6084/m9.figshare.c.3640331_d9
title: Additional file 9: Table S4. of The senescent methylome and its relationship with cancer, ageing and germline genetic variation in humans

description: Table containing the annotated information of the senescence associated probes reaching 0.01 FDR and beta value difference &gt;0.3 in both experiment 1 and experiment 2 which are located on chrX. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3640337_d1
title: Additional file 9: of Male and female mice show significant differences in hepatic transcriptomic response to 2,3,7,8-tetrachlorodibenzo-p-dioxin

description: Annotated Results (Male cohort). Linear modeling was performed to identify differentially abundant transcripts between TCDD-treated and control samples. A total of 21,115 transcripts were assessed in this study. Transcripts were annotated with Entrez Gene ID, gene Symbol and chromosome. Coefficients representing log2 fold-change and FDR-adjusted p-values are given. (XLSX 3725Â kb)
DOI: 10.6084/m9.figshare.c.3640337_d2
title: Additional file 6: of Male and female mice show significant differences in hepatic transcriptomic response to 2,3,7,8-tetrachlorodibenzo-p-dioxin

description: Sample Information. A total of 20 male and 20 female mice were included in this experiment. Each animal was treated with either corn oil or a single dose of TCDD (125, 250, 500 or 1000 μg/kg) dissolved in corn oil. Liver tissue was collected 4 days after treatment. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3640337_d4
title: Additional file 10: of Male and female mice show significant differences in hepatic transcriptomic response to 2,3,7,8-tetrachlorodibenzo-p-dioxin

description: Annotated Results (Female cohort). Linear modeling was performed to identify differentially abundant transcripts between TCDD-treated and control samples. A total of 21,115 transcripts were assessed in this study. Transcripts were annotated with Entrez Gene ID, gene Symbol and chromosome. Coefficients representing log2 fold-change and FDR-adjusted p-values are given. (XLSX 3730Â kb)
DOI: 10.6084/m9.figshare.c.3640337_d5
title: Additional file 11: of Male and female mice show significant differences in hepatic transcriptomic response to 2,3,7,8-tetrachlorodibenzo-p-dioxin

description: Transcription Factor Binding Site Analysis. The count of occurrences and conservation scores for each of four AHRE motifs [AHRE-I (core), AHRE-I (extended), AHRE-I (full), and AHRE-II] were determined for each gene (within 3kbp up- and downstream of the transcription start site). For comparison, the number of doses at which each gene was altered by TCDD (p adj â
DOI: 10.6084/m9.figshare.c.3640337_d8
title: Additional file 3: of Male and female mice show significant differences in hepatic transcriptomic response to 2,3,7,8-tetrachlorodibenzo-p-dioxin

description: Pathway Analysis. Pathway analysis was performed using GOMiner software to identify enriched gene ontologies within each sex/dose cohort. Enrichment scores and FDR-adjusted p-values are provided. (XLS 2546Â kb)
DOI: 10.15468/dl.5k7m4r
title: Occurrence Download

description: A dataset containing 324 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Schroederichthys chilensis (Guichenot, 1848))"
 ]
}

 The dataset includes 324 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033908-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640349_d2
title: Additional file 1: of The expanded program on immunization service delivery in the Dschang health district, west region of Cameroon: a cross sectional survey

description: Dataset. (XLSX 86.4 kb)
DOI: 10.6084/m9.figshare.c.3640379_d1
title: Additional file 2: of Varicella-zoster virus susceptibility and primary healthcare consultations in Norway

description: Model fitting information (Likelihood ratios and 95Â % confidence intervals (CI)). (S: Sex; R: region; A: age groups. Df: the number of parameters that differ between the two nested models; AIC: Akaike information criterion). (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3640379_d2
title: Additional file 1: of Varicella-zoster virus susceptibility and primary healthcare consultations in Norway

description: Univariate and multivariable analysis of varicella-zoster virus seropositivity by sex (reference: female), age group and region (reference: Oslo and Akershus) in Norway (odds ratios (OR), 95Â % confidence intervals (95Â % CI), and p-value). (XLSX 12Â kb)
DOI: 10.15468/dl.pakepp
title: Occurrence Download

description: A dataset containing 1387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Colombia, Ecuador, Peru, Bolivia (Plurinational State of), Venezuela (Bolivarian Republic of))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Juglans neotropica Diels"
 ]
}

 The dataset includes 1387 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033909-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640388_d1
title: Additional file 3: Table S3. of Application of targeted multi-gene panel testing for the diagnosis of inherited peripheral neuropathy provides a high diagnostic yield with unexpected phenotype-genotype variability

description: Variants of Unknown Clinical Significance (Class 3)Â (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3640388_d2
title: Additional file 1: Table S1. of Application of targeted multi-gene panel testing for the diagnosis of inherited peripheral neuropathy provides a high diagnostic yield with unexpected phenotype-genotype variability

description: Clearly Pathogenic Variants (Class 5) (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3640388_d3
title: Additional file 2: Table S2. of Application of targeted multi-gene panel testing for the diagnosis of inherited peripheral neuropathy provides a high diagnostic yield with unexpected phenotype-genotype variability

description: Likely Pathogenic Variants (Class 4) (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3640394_d3
title: Additional file 3: of Whole genome SNP typing to investigate methicillin-resistant Staphylococcus aureus carriage in a health-care provider as the source of multiple surgical site infections

description: Table S3. Antibiotic resistance gene profiles from WGS data using SRST2 and the ARGannot database. Genes marked with (*) indicate non-precise matches and (?) indicates uncertainty due to coverage. A (â   ) indicates the gene was absent. Different antibiotic classes are abbreviated as AGly: aminoglycosides, Bla: beta-lactamases, Fos: fosfomycin, Flq: fluoroquinolones, Gly: glycopeptides, MLS: macrolide-lincosamide-streptogramin, Phe: phenicols, and Tet: tetracyclines. (XLS 39Â kb)