cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5126693
title: Dataset: Toolset for Collecting Shell Commands and Its Application in Hands-on Cybersecurity Training

description: This repository contains supplementary materials for the following conference paper: Valdemar Švábenský, Jan Vykopal, Daniel Tovarňák, Pavel Čeleda.<br> <em>Toolset for Collecting Shell Commands and Its Application in Hands-on Cybersecurity Training.</em><br> In Proceedings of the 51st IEEE Frontiers in Education Conference (FIE 2021).<br> https://doi.org/10.1109/FIE49875.2021.9637052 Preprint available at: https://arxiv.org/abs/2112.11118 <strong>How to cite</strong> If you use or build upon the materials, please use the BibTeX entry below to cite the original paper (not only this web link). Some of the linked repositories have their separate citation entry; please use that one as well, if possible. <pre><code>@inproceedings{Svabensky2021toolset, author = {\v{S}v\'{a}bensk\'{y}, Valdemar and Vykopal, Jan and Tovar\v{n}\'{a}k, Daniel and \v{C}eleda, Pavel}, title = {{Toolset for Collecting Shell Commands and Its Application in Hands-on Cybersecurity Training}}, booktitle = {Proceedings of the 51st IEEE Frontiers in Education Conference}, series = {FIE '21}, location = {Lincoln, NE, USA}, publisher = {IEEE}, address = {New York, NY, USA}, month = {10}, year = {2021}, pages = {1--9}, numpages = {9}, isbn = {978-1-6654-3851-3}, url = {https://doi.org/10.1109/FIE49875.2021.9637052}, doi = {10.1109/FIE49875.2021.9637052}, }</code></pre> <strong>Structure of the repository</strong> We share four types of content described below. Each of the four types of materials includes: a link to an up-to-date GitLab repository, which may contain possible future revisions and error corrections, and a ZIP archive here on Zenodo that serves as a snapshot of the state when the article was published. <strong>Attached content</strong> <strong>Logging toolset.</strong> It is implemented in the form of Ansible roles and consists of three separate projects: for Bash logging, Metasploit logging, and log forwarding within the sandbox. <strong>Sample training.</strong> To quickly test the toolset, instantiate the exemplary cybersecurity game called Junior hacker training. It already deploys the logging; no further setup is needed. <strong>Dataset.</strong> The data collected with the toolset are available at this repository, which is being gradually updated with new data. Attached is a subset of this repository that includes the data analyzed in the paper. <strong>Analytical tools.</strong> To analyze the data, you can either use the attached Python scripts, or instantiate this project for ELK.
description: This research was supported by ERDF project CyberSecurity, CyberCrime and Critical Information Infrastructures Center of Excellence' (No. CZ.02.1.01/0.0/0.0/16_019/0000822).
DOI: 10.5281/zenodo.5126692
title: Dataset: Toolset for Collecting Shell Commands and Its Application in Hands-on Cybersecurity Training

description: This repository contains supplementary materials for the following conference paper: Valdemar Švábenský, Jan Vykopal, Daniel Tovarňák, Pavel Čeleda.<br> <em>Toolset for Collecting Shell Commands and Its Application in Hands-on Cybersecurity Training.</em><br> In Proceedings of the 51st IEEE Frontiers in Education Conference (FIE 2021).<br> https://doi.org/10.1109/FIE49875.2021.9637052 Preprint available at: https://arxiv.org/abs/2112.11118 <strong>How to cite</strong> If you use or build upon the materials, please use the BibTeX entry below to cite the original paper (not only this web link). Some of the linked repositories have their separate citation entry; please use that one as well, if possible. <pre><code>@inproceedings{Svabensky2021toolset, author = {\v{S}v\'{a}bensk\'{y}, Valdemar and Vykopal, Jan and Tovar\v{n}\'{a}k, Daniel and \v{C}eleda, Pavel}, title = {{Toolset for Collecting Shell Commands and Its Application in Hands-on Cybersecurity Training}}, booktitle = {Proceedings of the 51st IEEE Frontiers in Education Conference}, series = {FIE '21}, location = {Lincoln, NE, USA}, publisher = {IEEE}, address = {New York, NY, USA}, month = {10}, year = {2021}, pages = {1--9}, numpages = {9}, isbn = {978-1-6654-3851-3}, url = {https://doi.org/10.1109/FIE49875.2021.9637052}, doi = {10.1109/FIE49875.2021.9637052}, }</code></pre> <strong>Structure of the repository</strong> We share four types of content described below. Each of the four types of materials includes: a link to an up-to-date GitLab repository, which may contain possible future revisions and error corrections, and a ZIP archive here on Zenodo that serves as a snapshot of the state when the article was published. <strong>Attached content</strong> <strong>Logging toolset.</strong> It is implemented in the form of Ansible roles and consists of three separate projects: for Bash logging, Metasploit logging, and log forwarding within the sandbox. <strong>Sample training.</strong> To quickly test the toolset, instantiate the exemplary cybersecurity game called Junior hacker training. It already deploys the logging; no further setup is needed. <strong>Dataset.</strong> The data collected with the toolset are available at this repository, which is being gradually updated with new data. Attached is a subset of this repository that includes the data analyzed in the paper. <strong>Analytical tools.</strong> To analyze the data, you can either use the attached Python scripts, or instantiate this project for ELK.
description: This research was supported by ERDF project CyberSecurity, CyberCrime and Critical Information Infrastructures Center of Excellence' (No. CZ.02.1.01/0.0/0.0/16_019/0000822).
DOI: 10.6084/m9.figshare.24241210
title: Pediatric standardized residency training faculty’s perceptions of medical education research

description: An anonymous questionnaire survey was conducted involving 40 pediatric SRT clinical teachers from 10 hospitals in Guangdong Province.
DOI: 10.6084/m9.figshare.24241210.v1
title: Pediatric standardized residency training faculty’s perceptions of medical education research

description: An anonymous questionnaire survey was conducted involving 40 pediatric SRT clinical teachers from 10 hospitals in Guangdong Province.
DOI: 10.34885/ccpn-9465
title: World Checklist of Vascular Plants (WCVP) –Version 11.
DOI: 10.5281/zenodo.8405163
title: Mn23

description: Raw data acquired at ISOLDE, CERN during the 2023 <sup>57</sup>Mn<sup>*</sup> emission <em>Mössbauer</em>r Spectroscopy beamtime.
DOI: 10.5281/zenodo.8405162
title: Mn23

description: Raw data acquired at ISOLDE, CERN during the 2023 <sup>57</sup>Mn<sup>*</sup> emission <em>Mössbauer</em>r Spectroscopy beamtime.
DOI: 10.6084/m9.figshare.24241306
title: Supplementary Material for: Proteomics to metabolomics: A new insight into the pathogenesis of hypertensive nephropathy

description: Abstract Background: Hypertensive nephropathy (HN) is a high burden disorder and a leading cause of end-stage renal disorder. In spite of huge investigations, the underlying mechanisms are yet largely unknown. Systems biology is a promising approach to provide a comprehensive insight towards this complex disorder. Methods: Protein expression profiles of kidney tubule and cortex sub-compartments were retrieved from the PRIDE database and the quality of the datasets were assessed using principal component analysis (PCA) and hierarchical clustering. Differentially expressed proteins (DEPs) were detected and their attributed metabolites were enriched and their interactions were assessed in multi-layer networks. Moreover, considering the DEPs and the predicted metabolites, key biomedical phenomena with a leading role in HN pathogenesis were proposed. Results: Amino acid and purine metabolisms are the most prominent alteration in kidney cortex whereas dysregulation of energy hemostasis is a key pathogenic mechanism in tubule. Besides, actin cytoskeleton disorganization is an enriched pathway in both anatomical areas. Conclusion: The proteomics profiles of kidney sub-compartments were analyzed using a top-down approach to infer the main pathogenic processes. The constructed holistic map of HN can be exploited to propose novel therapeutic strategies. Keywords: Hypertensive nephropathy, Proteomics, Metabolomics, Systems biology
DOI: 10.6084/m9.figshare.24241306.v1
title: Supplementary Material for: Proteomics to metabolomics: A new insight into the pathogenesis of hypertensive nephropathy

description: Abstract Background: Hypertensive nephropathy (HN) is a high burden disorder and a leading cause of end-stage renal disorder. In spite of huge investigations, the underlying mechanisms are yet largely unknown. Systems biology is a promising approach to provide a comprehensive insight towards this complex disorder. Methods: Protein expression profiles of kidney tubule and cortex sub-compartments were retrieved from the PRIDE database and the quality of the datasets were assessed using principal component analysis (PCA) and hierarchical clustering. Differentially expressed proteins (DEPs) were detected and their attributed metabolites were enriched and their interactions were assessed in multi-layer networks. Moreover, considering the DEPs and the predicted metabolites, key biomedical phenomena with a leading role in HN pathogenesis were proposed. Results: Amino acid and purine metabolisms are the most prominent alteration in kidney cortex whereas dysregulation of energy hemostasis is a key pathogenic mechanism in tubule. Besides, actin cytoskeleton disorganization is an enriched pathway in both anatomical areas. Conclusion: The proteomics profiles of kidney sub-compartments were analyzed using a top-down approach to infer the main pathogenic processes. The constructed holistic map of HN can be exploited to propose novel therapeutic strategies. Keywords: Hypertensive nephropathy, Proteomics, Metabolomics, Systems biology
DOI: 10.5281/zenodo.8396320
title: Dataset of "Ecoenzymatic stoichiometry reveals increased phosphorus limitation of microbial metabolism in tropical forests along elevation gradients"

description: DOI reserved for Kuang
DOI: 10.5281/zenodo.8396321
title: Dataset of "Ecoenzymatic stoichiometry reveals increased phosphorus limitation of microbial metabolism in tropical forests along elevation gradients"

description: DOI reserved for Kuang
DOI: 10.5281/zenodo.8307861
title: Dataset underlying van Oorschot et al. (2023)

description: Data underlying Van Oorschot et al. (2023) 'Inter-annual land cover and vegetation variability based on remote sensing data in the HTESSEL land surface model: implementation and effects on simulated water dynamics'.
DOI: 10.5281/zenodo.8307860
title: Dataset underlying van Oorschot et al. (2023)

description: Data underlying Van Oorschot et al. (2023) 'Inter-annual land cover and vegetation variability based on remote sensing data in the HTESSEL land surface model: implementation and effects on simulated water dynamics'.
DOI: 10.6084/m9.figshare.24241243
title: Supplemental Information for “Nonuniform seismic unzipping of East Anatolian Fault reveals supercycle strategy”

description: This item includes 5 files:Supplemental Information: contains methods and supplemental data;Table S1: contains seismological data;Table S2: contains seismological data;Table S3: contains seismological data;Geospatial_KML_File_S1: contains spatial data.<br>
DOI: 10.5281/zenodo.8405259
title: MT.ATHOS in HUMANITIES RESEARCH Bibliometric Data

description: Dataset studied in Humanities and Arts Research on Mount Athos<br> Koutsoupias Dimitrios<br> Serafeim Pavlos<br> Vasileiadis Nikolaos<br> Kokovidou Marina<br> Koutsoupias Nikos
DOI: 10.5281/zenodo.8405258
title: MT.ATHOS in HUMANITIES RESEARCH Bibliometric Data

description: Dataset studied in Humanities and Arts Research on Mount Athos<br> Koutsoupias Dimitrios<br> Serafeim Pavlos<br> Vasileiadis Nikolaos<br> Kokovidou Marina<br> Koutsoupias Nikos
DOI: 10.57745/ock9wm
title: Bulk_density.tab

description: The metadata associated with the data from this file are presented in the table 3 of the Metadata.pdf file
DOI: 10.57745/rzsmjh
title: EON_physical_fractionation.tab

description: The metadata associated with the data from this file are presented in the table 3 of the Metadata.pdf file
DOI: 10.57745/dbdagg
title: Soil_description-1.tab

description: The metadata associated with the data from this file are presented in the metadata spreadsheet and in the table 1 of the Metadata.pdf file
DOI: 10.57745/h0km2k
title: Physico_chemical_properties.tab

description: The metadata associated with the data from this file are presented in the table 2 of the Metadata.pdf file
DOI: 10.57745/j4bxbf
title: EON_physical_fractionation-1.tab

description: The metadata associated with the data from this file are presented in the table 3 of the Metadata.pdf file
DOI: 10.57745/oaicne
title: Metadata.pdf

description: :unav
DOI: 10.57745/oc9fbk
title: Auger-extracted_soil_profiles.zip

description: :unav
DOI: 10.57745/qpnhla
title: Soil_description_metadata.tab

description: :unav
DOI: 10.57745/bhrso5
title: Bulk_density.tab

description: :unav
DOI: 10.57745/ftinvt
title: Soil_description_1.tab

description: The metadata associated with the data from this file are presented in the Soil_description_metadata.csv and in the table 1 of the Metadata.pdf file
DOI: 10.57745/uzx0sn
title: Physico_chemical_properties_1.tab

description: The metadata associated with the data from this file are presented in the table 2 of the Metadata.pdf file
DOI: 10.6084/m9.figshare.24241324
title: MAG proteomes

description: Proteomes of 4 new Afararchaeaceae MAGs, 9 new Asbonarchaeaceae MAGs, and 1 new Chewarchaeaceae MAG
DOI: 10.6084/m9.figshare.24241324.v1
title: MAG proteomes

description: Proteomes of 4 new Afararchaeaceae MAGs, 9 new Asbonarchaeaceae MAGs, and 1 new Chewarchaeaceae MAG
DOI: 10.11583/dtu.23660280.v1
title: Table S2. The overall measurement results for 129I, 236U, and 233U during 2015-2019 and the estimated ages of saline water in the Baltic Sea

description: Supplementary information for <em>Deciphering the Ages of Saline Water in the Baltic Sea by Anthropogenic Radiotracers</em>
DOI: 10.11583/dtu.23660280
title: Table S2. The overall measurement results for 129I, 236U, and 233U during 2015-2019 and the estimated ages of saline water in the Baltic Sea

description: Supplementary information for <em>Deciphering the Ages of Saline Water in the Baltic Sea by Anthropogenic Radiotracers</em>
DOI: 10.5517/ccdc.csd.cc26tdct
title: CCDC 2050196: Experimental Crystal Structure Determination

description: Related Article: Boris V. Bukvetskii, Natalya V. Petrochenkova, Anatolii G. Mirochnik|2022|Struct.Chem.|34|1707|doi:10.1007/s11224-022-02096-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8347994
title: Genetic variation of Scots pine in Eurasia: Impact of postglacial recolonisation and human-mediated gene transfer

description: <strong>The dataset comprises nuclear microsatellite data (PCR products lengths) used in the paper "Genetic variation of Scots pine in Eurasia: Impact of postglacial recolonisation and human-mediated gene transfer".</strong> <strong>The pdf file includes the list of populations.</strong> Abstract: Scots pine (<em>Pinus sylvestris</em> L.) seems to be a species of low conservation priority because it has a very wide Eurasian distribution and plays a leading role in many forest tree breeding programs. Nevertheless, considering its economic value, long breeding history, range fragmentation, and increased mortality, which is also projected in the future, it requires a more detailed description of its genetic resources. Our goal was to compare patterns of genetic variation found in biparentally inherited nuclear DNA with previous research carried out with mitochondrial and chloroplast DNA due to their different modes of transmission. We analysed the genetic variation and relationships of 60 populations across the distribution of Scots pine in Eurasia (1,262 individuals) using a set of nuclear DNA markers. We confirmed the high genetic variation and low genetic differentiation of Scots pine spanning large geographical areas. Nevertheless, there was a clear division between European and Asian gene pools. The genetic variation of Asian populations was lower than in Europe. Spain, Turkey, and the Apennines constituted separate gene pools, the latter showing the lowest values of all genetic variation parameters. The analyses showed that most populations experienced genetic bottlenecks in the distant past. Ongoing admixture was found in Fennoscandia. Our results suggest a much simpler recolonization history of the Asian than European part of the Scots pine distribution, with migration from limited sources and possible founder effects. Eastern European stands seem to have descended from the Urals refugium. It appears that Central Europe and Fennoscandia share at least one glacial refugium in the Balkans and migrants from higher latitudes, as well as from southeastern regions. The low genetic structure between Central Europe and Fennoscandia, along with their high genetic admixture, may result at least partially from past human activities related to the transfer of germplasm in the 19<sup>th</sup> and early 20<sup>th</sup> centuries. In light of ongoing climate changes and projected range shifts of Scots pine, conservation strategies are especially needed for marginal and isolated stands of this species. Genetic research should also be complemented in parts of the species distribution that have thus far been poorly studied.
DOI: 10.5281/zenodo.8347995
title: Genetic variation of Scots pine in Eurasia: Impact of postglacial recolonisation and human-mediated gene transfer

description: <strong>The dataset comprises nuclear microsatellite data (PCR products lengths) used in the paper "Genetic variation of Scots pine in Eurasia: Impact of postglacial recolonisation and human-mediated gene transfer".</strong> Abstract: Scots pine (<em>Pinus sylvestris</em> L.) seems to be a species of low conservation priority because it has a very wide Eurasian distribution and plays a leading role in many forest tree breeding programs. Nevertheless, considering its economic value, long breeding history, range fragmentation, and increased mortality, which is also projected in the future, it requires a more detailed description of its genetic resources. Our goal was to compare patterns of genetic variation found in biparentally inherited nuclear DNA with previous research carried out with mitochondrial and chloroplast DNA due to their different modes of transmission. We analysed the genetic variation and relationships of 60 populations across the distribution of Scots pine in Eurasia (1,262 individuals) using a set of nuclear DNA markers. We confirmed the high genetic variation and low genetic differentiation of Scots pine spanning large geographical areas. Nevertheless, there was a clear division between European and Asian gene pools. The genetic variation of Asian populations was lower than in Europe. Spain, Turkey, and the Apennines constituted separate gene pools, the latter showing the lowest values of all genetic variation parameters. The analyses showed that most populations experienced genetic bottlenecks in the distant past. Ongoing admixture was found in Fennoscandia. Our results suggest a much simpler recolonization history of the Asian than European part of the Scots pine distribution, with migration from limited sources and possible founder effects. Eastern European stands seem to have descended from the Urals refugium. It appears that Central Europe and Fennoscandia share at least one glacial refugium in the Balkans and migrants from higher latitudes, as well as from southeastern regions. The low genetic structure between Central Europe and Fennoscandia, along with their high genetic admixture, may result at least partially from past human activities related to the transfer of germplasm in the 19<sup>th</sup> and early 20<sup>th</sup> centuries. In light of ongoing climate changes and projected range shifts of Scots pine, conservation strategies are especially needed for marginal and isolated stands of this species. Genetic research should also be complemented in parts of the species distribution that have thus far been poorly studied.
DOI: 10.18712/nsd-nsd2605-v4
title: Norwegian Citizen Panel Round 12, 2018

description: The Norwegian Citizen Panel is a platform for internet surveys of public opinion in important areas of society and politics in Norway. Participants are randomly recruited from the Norwegian population register, and they are encouraged to participate over time. The panel was fielded for the first time the fall of 2013 and as of 2017 the survey is carried out three times a year. The University of Bergen owns and is responsible for the Citizen panel. The company ideas2evidence recruits respondents, produces the survey, and provides documentation of the data. Data is stored and shared by Sikt - Norwegian Agency for Shared Services in Education and Research. For access to time series data, or text data, please contact DIGSSCORE. The Norwegian Citizen Panel welcomes research proposals for survey content. More information about calls and other updates are available at www.medborger.uib.no
DOI: 10.5281/zenodo.8405295
title: META DATA FOR ENSEMBLE PROJECT

description: ### META DATA FOR ENSEMBLE PROJECT ### This dataset contains raw field measurements and laboratory results of field surveys and experiments performed in the ENSEMBLE project. <br> For more information on the ENSEMBLE Project and related publications please see: https://www.epfl.ch/labs/river/ensemble/ This dataset contains data and metadata for field surveys conducted in June and August 2019 (ENSEMBLE_2019_Campaign) and data and metadata on a global-change microbiology experiment performed during summer 2020 (ENSEMBLE_2020_Experiment). ### ENSEMBLE Field Campaign ###<br> - Sensor data contains a continuous record of key environmental parameter (Temperature, Electrical Conductivity, pH, Turbidity) measured at the the three field sites (Val Sorey, Valroseg and Otemma)<br> - BA contains flow cytometric measurements of bacterial abundance (in cells g-1 dry sediment).<br> - BP contains measurements of bacterial carbon production measured as 3H Leucine incorporation.<br> - Chla-1 and Chla-2 contain data on the spectrophotometric measurement of chlorophyl-a (after extraction in EtOH).<br> - DOC contains data on the concentration of Dissolved Organic Carbon.<br> - EEA contains data on the measurements of Extracellular Enzyme Activities.<br> - EPS contains data on the quantification of Extracellular Polymeric Substances measured as carbohydrate equivalents (Dubois assay).<br> - Field Data contains metadata (ID, coordinates, sampling time, etc) for the field sites.<br> - NUT contains measurements of main water nutrients (NO3, NO2, NH4, and SRP)<br> - SI contains data on water stable isotopes<br> - Water Metadata contains measurements of key environmental data for a subset of sites. <br> ### ENSEMBLE Experiment ### - The folder Pictures contains drone images and close-up pictures of the field experiment setup.<br> - CHLA_BA contains measurements of chl-a concentration and bacterial cell counts<br> - metadata contains measurements of key environmental parameter for each treatment over the course of the experiment<br> - NUT contains measurement of main water nutrients (NO3, NO2, NH4, and SRP)<br>