cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2537671
title: Interspecific competition affects the expression of personality-traits in natural populations

description: Interspecific competition can cause niche partitioning among species in a community and shape an individual’s phenotype, including its behaviour. However, little is known about how interspecific competition affects the expression of animal personality. We investigated whether the occurrence of competing alien grey squirrels (<em>Sciurus carolinensis</em>) altered personality traits in native Eurasian red squirrels (<em>Sciurus vulgaris</em>). We compared personality traits of red squirrels in red-only (no interspecific competition) and red-grey (with interspecific competition) sites, using arena tests. Open Field Test returned repeatable estimates of activity and shyness, Mirror Image Stimulation test of sociability and avoidance of a conspecific. Red squirrels competing with the alien species had higher sociability and slightly lower avoidance than in red-only sites. Moreover, an individual’s probability to survive was not affected by any of the personality traits, but more active females were more likely to wean a litter than shy ones. This relationship was not affected by the presence or absence of the alien competitor. Our findings suggest that the occurrence of certain personality traits in red squirrels was affected by interspecific competition not as a consequence of short-term selection, but more likely as a result of context-related advantages of sociability or avoidance.
description: Raw dataset and two R scripts to produce a general and per-area models are provided.
DOI: 10.21227/va5y-0437
title: SpaceTelemetry

description: This dataset simulates the behaviour of a satellitesensor through time.
DOI: 10.5525/gla.researchdata.727
title: M segment-based minigenomes and virus-like particle assays as an approach to assess the potential of tick-borne Phlebovirus genome reassortment

description: Data underpinning work to assess tick-borne phlebovirus reassortment potential in vitro.
DOI: 10.17632/zwxvhg62gg.1
title: Spoecificity and effects of treatment on SE modulation in schizophrenia

description: We assessed SE modulation of EEG during a P300 task in 79 schizophrenia patients (of them, 31 first episodes (FE)), 29 bipolar patients and 48 healthy controls. In a subsample, structural network connectivity parameters were calculated using diffusion tensor imaging. Significant SE modulation deficits were found in chronic and FE schizophrenia and bipolar patients. These deficits were unrelated to treatment doses. SE modulation values did not differ between patients receiving or not antipsychotics, lithium, benzodiazepines or antidepressants. Structural connectivity values were unrelated to SE modulation. In schizophrenia, SE modulation was inversely related to negative symptoms and directly to verbal memory. In conclusion, SE modulation with cognition is decreased in schizophrenia and bipolar disorder. This decrease was not an effect of psychopharmacological treatment or structural connectivity and might reflect a deficit in synchronization of neural assemblies underlying cognitive activity in major psychoses.
DOI: 10.17632/6hykykmn65.1
title: Automatic identification of relevant chemical compounds from patents. The training corpus.

description: Background In commercial research and development projects, public disclosure of new chemical compounds often takes place in patents. Only a small proportion of these compounds are published in journals, usually a few years after the patent. Patent authorities make available the patents but do not provide systematic continuous chemical annotations. Content databases such as Elsevier's Reaxys provide such services mostly based on manual excerptions, which are time-consuming and costly. Automatic text-mining approaches help overcome some of the limitations of the manual process. Different text-mining approaches exist to extract chemical entities from patents. Majority of them have been developed using sub-sections of patent documents and focus on mentions of compounds. Less attention has been given to relevancy of a compound in a patent. Relevancy of a compound to a patent is based on the patent's context. A relevant compound plays a major role within a patent. Identification of relevant compounds reduces the size of the extracted data and improves the usefulness of patent resources (e.g., supports identifying the main compounds). Annotators of databases like Reaxys only annotate relevant compounds. In this study, we design an automated system that extracts chemical entities from patents and classifies their relevance. To develop and evaluate the system, a patent corpus with annotations for chemical entities and their relevance was constructed.
DOI: 10.17632/brh5dnyzz3.1
title: Impact of Parenting Style on Internet Altruistic Behavior of College Students

description: Parenting Style, Internet Altruistic Behavior, Empathy and Gratitude
DOI: 10.17632/frh4mn9dgk.2
title: Transcriptome reveal alterations in muscle metabolisms and immune system of grass carp (Ctenopharyngodon idellus) cultured under 3 different stocking densities

description: To reveal the adverse effects of both ultra-high and extreme-low stocking densities on muscle metabolisms and immune system of grass carp (Ctenopharyngodon idellus). Especially, to screen the DEGs associated with the differences in nutrients metabolism and immune responses from the transcriptome profiles of the three experimental groups, and reveal potential molecular regulatory mechanisms those contribute to these differences caused by different stocking densities.
DOI: 10.17632/fz5dp4b64s.1
title: processed data for research reproduction

description: A multitude of micro- and nano-surface structures have been developed to improve the clinical performance of endosseous titanium (Ti) implants. However, most of these surface structures only simulate the topographic elements on a micro- or nano-scale. Here, we describe a novel strategy to construct a bioinspired nano-micro hierarchical TiO2 clustered nanotubular surface structure using platelet derived growth factor-BB (PDGF-BB) covalently modified Ti implants, which highly mimic the structure of collagen in bone (Figure 1). This bio-activated hierarchical surface topography is referred to as NTPCP, nanotubular surface with PDGF-BB covalent modification via PhoA (11-hydroxyundecylphosphonic acid)/CDI (carbonyldiimidazole) chemistry. It provides a 3-dimentional spatial biomimetic structure for host cells, with negligible cytotoxicity (Figure 2) and satisfactory bio-activity for significantly enhancing cell attachment and osteogenic functions (including proliferation, extracellular matrix synthesis, and mineralization) of human bone mesenchymal stem cells (bMSCs) (Figure 3-6). Remarkably, we observed burst expression of osteocalcin (OCN)(Figure 5 and 7), which mirrored prominent bone formation around the NTPCP implants in a rat model(Figure 8). Our study provides a promising strategy of surface modification to improve osseointegration of endosseous Ti implants. Considering the regulatory effects of OCN on glucose homeostasis, NTPCP may be applied in diabetic patients in the future. The surface topography of clustered TiO2 nanotubular structure on Ti surface were scanned by FE-SEM and AFM. The surface roughness and wettability of prepared Ti samples were detected by AFM and DSA system respectively. The covalent modification of PDGF-BB on clustered TiO2 nanotubular structure on Ti surface was detected by XPS and immunofluorescent staining. The cell attachment and morphology of bMSCs on prepared Ti surfaces were observed by laser confocal scanning microscope and analyzed by image semi-quantitative analyzing. The cell proliferation and cytotoxicity determination were evaluated by MTT assay. The osteogenic genes expression were detected by q-PCR. The ECM mineralization were inspected by mineralized nodule staining and collegen staining. The in vivo study was performed by in vivo implantation model in rats. The OCN expression around Ti implants was observed by OCN immunofluorescent staining, The bone formation around Ti implants was analyzed by VG staining and image semi-quantitative analyzing.
DOI: 10.17632/w3fxn99gyk.1
title: Tracking design by analyzing selected design instants: a study with architecture students
DOI: 10.17632/w3fxn99gyk.2
title: Dataset for the paper MILLAN, EVA (2019), “Tracking design by analyzing selected design instants: a study with architecture students”, submitted to Design Studies
DOI: 10.17632/3rvk8w25xt.2
title: raw and processed data

description: link between activation of anxiogenic circuits and hypermetabolism
DOI: 10.17632/64db36w8kf.2
title: Data for "Network structure of resilience in university students"

description: Dataset for "Network structure of resilience in university students"
DOI: 10.17632/fjvgr9rn2f.1
title: Dataset for "New studies on the photodegradation of the herbicide Glyphosate"

description: The photodegradation of glyphosate (PMG) in aqueous solution by the action of UV-light and the catalytic effect of copper and copper-alga Ulva lactuca was studied. The photodegradation kinetic reaction of PMG can be described using a first-order kinetic model, with a mean rate constant of k = (0.04 ± 0.01) h-1 and a mean half-life () = (17 ± 4) h. The quantum yield () obtained for the photochemical decomposition of PMG was (4.8 ± 0.1) 10-4 mol Einstein-1, and the photodegradation by-products obtained were: acetate, aminomethylphosphonic acid (AMPA), phosphate, sarcosine and to a lesser extent nitrate. The photolytic process seems to be the main responsible for the herbicide degradation. The presence of copper in the reaction media increases 30 times the rate of PMG degradation, with respect to the photodegradation in the absence of the metal. The degradation efficiency of the ternary system PMG-Cu-alga is ≈ 8 times greater than the photolysis of PMG in aqueous solution, but is at least 4 times smaller than the degradation efficiency in the presence of Cu(II). The present work represents a new approach on the photodegradation of the herbicide glyphosate and the results obtained may contribute to the development of new remediation technologies. This data are the results obtained for the photodegradation of PMG
DOI: 10.17632/gj763hyrny.2
title: RNA-seq profiling of 368T1 murine KP NSCLC cells deleted for AMPK with AMPKa1 add-back subjected to high glucose conditions, Replicate 1

description: This dataset was generated for the paper, "Genetic analysis reveals AMPK is required to support tumor growth in murine Kras-dependent lung cancer models." Murine Kras mutant, p53 null (KP) 368T1 NSCLC cells were deleted for AMPK using the CRISPR/Cas9 system and subsequently stably infected with control vector ("KO") or AMPKalpha1 cDNA ("A1") add-back. These cells were subjected to high glucose (25mM, "HG") conditions for 12 or 18 hours, and profiled by RNA-sequencing. Replicate 1 High Glucose (HG) and No Glucose (NG) conditions were generated simultaneously and analyzed together. Analysis of a single dataset was performed using Replicate 1 ("R1"), and both replicates ("R1" and "R2") were analyzed together as indicated.
DOI: 10.17632/3cy28w7v9k.2
title: RNA-seq profiling of 634T murine KP NSCLC cells deleted for AMPK subjected to no glucose conditions

description: This dataset was generated for the paper, "Genetic analysis reveals AMPK is required to support tumor growth in murine Kras-dependent lung cancer models." Murine Kras mutant, p53 null (KP) 634T NSCLC cells were subjected to the CRISPR/Cas9 system including either a control gRNA (“WT”), or a gRNA targeting both AMPKalpha1 and AMPKalpha2 resulting in AMPK knockout in a polyclonal pooled cell population (“KO”). "R1" indicates Replicate 1, "R2" indicates Replicate 2. These cells were subjected to no glucose (0mM, "NG") conditions for 16 hours, and profiled by RNA-sequencing.
DOI: 10.17632/pk94my96cv.1
title: Thermostable Laccase from Psilocybe castanella: characterization and pentachlorophenol degradation

description: Pentachlorophenol has its use banned in several countries. In Brazil, its uncontrolled deposition resulted in soil contamination which requires strategies for decontamination. This paper aimed at describing the partial purification and characterization of a thermostable laccase produced by this fungus during its growth in soil, and assessing its role in in vitro pentachlorophenol biodegradation. For this purpose, P. castanella was cultivated in a solid system containing sandy soil. The extracellular enzyme extract was obtained by partial purification, characterized and used to evaluate the degradation of pentachlorophenol in vitro. Laccase was the only enzymatic activity detected both in the crude extract and during the following steps until preparation. The molecular mass of the partially purified laccase was estimated to be 64 KDa, with apparent KM of 0.47 μMol, and Vmax of 11.16 U. L-1. Optimum temperature and pH were 55 ° C and 2.5, respectively. The T1/2 verified at 55 ° C, 60 ° C, and 80 ° C were 19 hours, 17 hours, and 47 minutes, respectively. The highest pentachlorophenol biodegradation was 23%, at pollutant concentrations of 100 μg. L-1. Our results evidenced that thermostable laccase produced by P. castanella during its growth in soil is involved in pentachlorophenol biodegradation.
DOI: 10.17632/hdsb3wpt6j.1
title: Raw, not cropped supporting Western blot files for: Jeong YT. ... Pagano M. The ULK1-FBXW5-SEC23B nexus controls autophagy

description: Raw, not cropped supporting Western blot files for: Jeong Y., Simoneschi D., Keegan S., Melville D., Adler. N., Saraf A., Florens L., Washburn M., Casavotto C., Fenyo D., Cuervo A., Rossi M., and Pagano M. The ULK1-FBXW5-SEC23B nexus controls autophagy. eLife doi:7:e42253 doi: 10.7554, 2018.
DOI: 10.5281/zenodo.2537733
title: Cellulose test MD dataset for analysis with Galaxy and BRIDGE

description: This coordinate and trajectory dataset is that of cellulase and octaose substrate in water. It has been derived from the 7CEL PDB structure of a fungal cellobiohydrolase. 

The original enzyme has been modified to revert the mutation at position 217 and to include disulfide bonds. The octaose substrate is an oligosaccharide consisting of 8 beta 1-4 linked glucose monomers.  The enzyme and substrate have been placed in a cubic TIP3P water box containing 0.15 M ions (NaCl).

The files includes are: 


	<strong>cbh1test.pdb</strong>: the coordinates of the entire system (water, protein and substrate) in PDB format. 
	<strong>cbh1test.dcd</strong>: a short MD trajectory (16 frames) in CHARMM DCD format.
DOI: 10.5281/zenodo.2537734
title: Cellulose test MD dataset for analysis with Galaxy and BRIDGE

description: This coordinate and trajectory dataset is that of cellulase and octaose substrate in water. It has been derived from the 7CEL PDB structure of a fungal cellobiohydrolase. 

The original enzyme has been modified to revert the mutation at position 217 and to include disulfide bonds. The octaose substrate is an oligosaccharide consisting of 8 beta 1-4 linked glucose monomers.  The enzyme and substrate have been placed in a cubic TIP3P water box containing 0.15 M ions (NaCl).

The files includes are: 


	<strong>cbh1test.pdb</strong>: the coordinates of the entire system (water, protein and substrate) in PDB format. 
	<strong>cbh1test.dcd</strong>: a short MD trajectory (16 frames) in CHARMM DCD format.
DOI: 10.17632/2sc4c24sc2.2
title: Botanic species in the Brazilian caatinga biome in the National Park of Sete Cidades reserve.

description: The data set contains 3027 images of five different species, images were generated in the National Park of Sete Cidades that is in a transition area between caatinga and cerrado in the middle northern Piauí region in Brazil. It has a rich and diverse native vegetation where the American Curatela (sambaíba), Himatanthus drasticus (janaguba), Annona crassiflora (araticum), Anacardium nanum (cajuí) and (Dimorphandra Mollis) faveira, local plants that were used in the confection this dataset. The set is divided into five directories are: "araticun, cajui, faveira, janaguba, sambaiba". are 418 pictures of araticun, 676 of cajui, 543 faveira, 809 janaguba, 581 sambaiba.
DOI: 10.17632/3kxpn6nsx4.1
title: Text Message Survey Pilot Data_2019
DOI: 10.17632/c3vscvghy3.1
title: Oxygen Desaturation During Sleep Predicts Silent Brain Infarction in Obstructive Sleep Apnea

description: Oxygen Desaturation During Sleep Predicts Silent Brain Infarction in Obstructive Sleep Apnea Abstract: Background: Obstructive sleep apnea has been identified as a risk factor for stroke. Evidence is increasing that obstructive sleep apnea is a cause of silent brain infarction and that endothelial dysfunction triggered by oxygen desaturation during sleep is the underlying mechanism. Methods: We used a retrospective cohort design to examine the risk of silent brain infarction in 24 obstructive sleep apnea subjects and 24 control subjects. Both cohorts underwent sleep studies, MRI scanning of the brain, determination of C-reactive protein level, and determination of soluble P-selectin levels. Cohorts were comparable in age and BMI. Exclusion criteria included cigarette smoking, hypertension, diabetes mellitus, coronary artery disease, hyperlipidemia, and obesity. Results: There were no silent brain infarcts in the control subjects. Eleven of the 24 subjects with obstructive sleep apnea had a silent brain infarction. The lowest level of oxygen desaturation during sleep was significantly lower in the obstructive sleep apnea subjects with silent brain infarction (66.8  9.2 %) than obstructive sleep apnea subjects without silent brain infarction (82.2  8.0 %). C-reactive protein levels were higher in subjects with silent brain infarction (76.0  52.6 mg/L) than those without silent brain infarction (14.8  56.1 mg/L). Similarly, soluble P-selectin levels were higher in subjects with silent brain infarctions (274.8  89.1 U/ml) than in subjects without silent brain infarction (100.1  47.3 U/l). A logistic regression model confirmed that in obstructive sleep apnea subjects, lowest levels of oxygen desaturation during sleep is predictive of silent brain infarction. Conclusion: Obstructive sleep apnea is a risk factor for silent brain infarction and can cause silent brain infarctions in subjects without traditional stroke risk factors. Among subjects with obstructive sleep apnea, lowest levels of oxygen desaturation during sleep are predictive of silent brain infarction. Oxygen desaturation during sleep may cause endothelial dysfunction that triggers a pro-inflammatory and pro-thrombotic state that is conducive to silent brain infarction.
DOI: 10.17632/pr246v6594.2
title: Synthetic Edges for Corner Training DATA

description: The training dataset is composed by 31x31pixels images of synthetic edges of 38160 (73.6%) CORNERS and 13680 (26.4%) NO-CORNERS. We generated, from the central pixel, two line segments, L1 and L2, that are oriented by the angles a1 and a2 respectively as shown in "line-segments.png". The angles vary from 0° to 355°, in increments of 5°. When the inner angle between L1 and L2 is less than 140°, the descriptor that is associated to the central pixel belongs to the CORNER Class. Otherwise, a greater angle is considered a straight line and the central pixel belongs to the NO-CORNER class. Aiming to obtain a noise-robust corner detector, we generated ten images with salt and pepper noise with 0.04 as noise density, for each combination (L1,L2) as shown in "dataset.png".
DOI: 10.17632/y2s6wsy8n7.1
title: Role of Biological Soil Crusts on Salt Dynamic in Qara Qir Rangeland, Golestan Province, Iran

description: -
DOI: 10.17632/m8gvd8sb66.1
title: Prevalence of Child Maltreatment in Ecuador Using the ICAST-R

description: Hypothesis and Data Analysis: A descriptive analysis was conducted to examine the prevalence of physical, emotional, and sexual abuse. Chi Square statistics were conducted to compare the prevalence of maltreatment for males and females. Cohen h effect sizes for differences between proportions were computed Participants: A representative sample from the largest universities in Quito, Ecuador (M=1,579, F= 1,554) completed an Ecuadorian adaptation of the Spanish version of the ICAST-R. The various university authorities were contacted for permission to collect the data from students on their sites. A convenient sample of university professors was then contacted and requested permission to allow a research assistant to come into their classrooms at their convenience. Only classrooms arranged with individual desks were included in this study. In each classroom students were first given the consent forms. Then, the ICAST-R questionnaire was distributed to those students who agreed to participate. The response rate for this study was high (98%). The students who did not consent were requested to stay silent and remain in their own individual chairs. After completion of the questionnaire, participants were to put the questionnaire in a slotted box located in the front desk. The research assistant responded to questions and remained in the classroom until all students had finished. Results: The results of the present study indicate that close to half of the participants experience some kind of physical (47.6%) and emotional (53%) maltreatment during their childhood. For physical abuse, females mentioned their mothers, while males mentioned both parents and peers as the most common perpetrators. For emotional abuse, both males and females mentioned same-sex peers and parents as the most frequent perpetrators. Childhood sexual abuse was reported by 15.52% of the participants. For girls, most of the abuse came from adult males, whereas in the case of boys, young females were the most common sexual abuse perpetrators. Conclusions: The results of this study compared with the worldwide trend observed in meta-analysis of studies in the field indicate that our Ecuadorian sample resembles the prevalence of sexual abuse and exceeds the prevalence of physical and emotional maltreatment. The gender-specific patterns that emerged in the present study indicate that the kinds of child maltreatment and the contexts in which they occur differ for girls and boys.