cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5524/101829
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0766

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002243. Preliminary identification is that it is of the family Brassaiopsis fatsioides. <br>The K-mer distribution of the sequencing predicted the genome size to be Not recordedbp. We have generated 66900000000bp of data, which gives a theoretical coverage of x.
DOI: 10.5524/101830
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0767

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001941. Preliminary identification is that it is of the family Solanaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be Not recordedbp. We have generated 75220000000bp of data, which gives a theoretical coverage of x.
DOI: 10.5524/101783
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0720

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002220. Preliminary identification is that it is of the family Mecardonia procumbens. <br>The K-mer distribution of the sequencing predicted the genome size to be 523265000bp. We have generated 73660000000bp of data, which gives a theoretical coverage of 140.8x.
DOI: 10.5524/101784
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0721

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001691. Preliminary identification is that it is of the family Fabaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 677407000bp. We have generated 74860000000bp of data, which gives a theoretical coverage of 110.5x.
DOI: 10.5524/101789
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0726

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001600. Preliminary identification is that it is of the family Cactaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 1603090000bp. We have generated 68560000000bp of data, which gives a theoretical coverage of 42.8x.
DOI: 10.5524/101790
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0727

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001966. Preliminary identification is that it is of the family Zingiberaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 2360770000bp. We have generated 65380000000bp of data, which gives a theoretical coverage of 27.7x.
DOI: 10.5524/101792
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0729

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002222. Preliminary identification is that it is of the family Broussonetia papyrifera. <br>The K-mer distribution of the sequencing predicted the genome size to be 428745000bp. We have generated 68400000000bp of data, which gives a theoretical coverage of 159.5x.
DOI: 10.5524/101793
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0730

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002223. Preliminary identification is that it is of the family Colebrookea oppositifolia. <br>The K-mer distribution of the sequencing predicted the genome size to be 451230000bp. We have generated 66340000000bp of data, which gives a theoretical coverage of 147x.
DOI: 10.5524/101799
title: Image data of Nanmaohu Park Cynanchum corymbosum plant specimen, RL0736

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as HCNGB:RUILI:HCNGB_00002227. Preliminary identification is that of a Cynanchum corymbosum plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.5524/101804
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0741

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001622. Preliminary identification is that it is of the family Cornaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 1488970000bp. We have generated 82040000000bp of data, which gives a theoretical coverage of 55.1x.
DOI: 10.5524/102164
title: Genomic data from Royal penguin (<em>Eudyptes chrysolophus schlegeli</em>).

description: The Royal penguin is a crested penguin with golden-yellow crests found primarily on Macquarie Island, however a few individuals have also been detected in the Prince Edward Island group and other subantarctic islands. The Royal penguin is often considered a separate species from the Macaroni penguin, given its unique white facial plumage and relatively restricted breeding range. Several recent genetic studies, however, have demonstrated that the Royal penguin and Macaroni penguin are probably incipient. Historically, Royal penguins were hunted for their oil (between 1870 - 1919). The International Union for Conservation of Nature (IUCN) classifies the Royal penguin as near threatened.<br>We sequenced the genome of an adult Royal penguin from Green Gorge, Macquarie Island, Australia (provided by Gary Miller) to a depth of approximately 320x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.18Gb, with the contig and scaffold N50 values of 23.62Kb and 1.79Mb respectively. We identified 17191 protein-coding genes.
DOI: 10.5524/102172
title: Genomic data from Yellow-eyed penguin (<em>Megadyptes antipodes antipodes</em>).

description: The Yellow-eyed penguin (hoiho in Mori) is native to New Zealand. It breeds along the eastern and south-eastern coasts of the New Zealand South Island, Stewart Island, Auckland Islands and Campbell Islands. They are a popular tourist venue in Otago. On the New Zealand mainland, the Yellow-eyed penguin has declined significantly - attributed to a range of factors including climate change and fisheries. Local extinction on the mainland is possible in the next 20 to 40 years. They are larger in size, but very closely related to the recently extinct Waitaha penguin and Chatham Island Yellow-eyed penguin. Genetic work demonstrates that the Yellow-eyed penguin expanded its range from the sub-Antarctic islands to the main islands of New Zealand after the extinction of the Waitaha penguin. The Yellow-eyed penguin is classified as endangered by the International Union for Conservation of Nature (IUCN) and is considered one of the world's rarest penguin species. The Yellow-eyed penguin is a Taonga, or treasured possession in Mori culture.<br>We sequenced the genome of an adult Yellow-eyed penguin from Otago Peninsula, New Zealand South Island (provided by Melanie Young) to a depth of approximately 88x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.25Gb, with the contig and scaffold N50 values of 81.99Kb and 22.24Mb respectively. We identified 16563 protein-coding genes.
DOI: 10.5524/102174
title: Genomic data from African penguin (<em>Spheniscus demersus</em>).

description: The African penguin (also known as jackass penguin and black-footed penguin) is endemic to southern African coasts. The pink gland above the eyes helps to adjust to changing temperatures: when it's hotter, more blood is sent to these glands to be cooled by the surrounding air. It is a charismatic species and is popular with tourists. The African penguin has declined rapidly and the International Union for Conservation of Nature (IUCN) classifies it as endangered.<br>We sequenced the genome of an adult African penguin from Luderitz, Namibia (provided by Kim Labuschagne) to a depth of approximately 115x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.23Gb, with the contig and scaffold N50 values of 99.03Kb and 14.67Mb respectively. We identified 16134 protein-coding genes.
DOI: 10.5524/102169
title: Genomic data from Eastern rockhopper penguin (<em>Eudyptes filholi</em>).

description: The Eastern rockhopper penguin is a small crested penguin. It is closely related to the Western rockhopper penguin, however there is still some debate about whether both are considered incipient species, sub-species or distinct species. Recent genetic work suggests they are probably separate species. The Eastern rockhopper penguin breeds widely on subantarctic islands from New Zealand Campbell/Auckland/Antipodes Islands to the Prince Edward Islands group. The International Union for Conservation of Nature (IUCN) classifies the Southern rockhopper penguin group (including both the Eastern and the Western rockhopper penguin) as vulnerable.<br>We sequenced the genome of an adult Eastern rockhopper penguin from Possession Island, Crozet Islands (provided by Yves Cherel) to a depth of approximately 163x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.25Gb, with the contig and scaffold N50 values of 72.54Kb and 6.13Mb respectively. We identified 15963 protein-coding genes.
DOI: 10.5524/102173
title: Genomic data from Magellanic penguin (<em>Spheniscus magellanicus</em>).

description: The Magellanic penguin breeds in coastal Argentina, Chile and the Falkland Islands. Nests are built under bushes or in burrows, and they lay eggs in warm places when the temperature remains over 20. Magellanic penguins travel in large flocks when hunting for food. The International Union for Conservation of Nature (IUCN) classifies the Magellanic penguin as near threatened.<br>We sequenced the genome of an adult Magellanic penguin from Chiloe Island, Chile (provided by Juan Bouzat) to a depth of approximately 171x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.2Gb, with the contig and scaffold N50 values of 40.48Kb and 12.09Mb respectively. We identified 16795 protein-coding genes.
DOI: 10.5524/102176
title: Genomic data from Humboldt penguin (<em>Spheniscus humboldti</em>).

description: The Humboldt penguin inhabits coastal Chile and Peru. They nest on islands and rocky coasts, holes in guano and in caves. Humboldt penguin populations are declining, and the International Union for Conservation of Nature (IUCN) classifies them as vulnerable.<br>We sequenced the genome of an adult Humboldt penguin from Copenhagen Zoo, of Peru and Chile lineage (provided by Mads Bertelsen) to a depth of approximately 172x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.21Gb, with the contig and scaffold N50 values of 19.38Kb and 5.94Mb respectively. We identified 16587 protein-coding genes.
DOI: 10.5524/102179
title: Genomic data from Fairy penguin (<em>Eudyptula novaehollandiae</em>).

description: The Australian fairy penguin (also known as little blue penguin, blue penguin and little penguin) is one of the smallest penguins. It is found widely along the southern coastlines of Australia and the Otago coast of New Zealand. They have a slate-blue plumage. Recent genetic, morphological and behavioral research has demonstrated that the Australian fairy penguin is a separate species to the New Zealand little blue penguin, however this still remains controversial. Populations have recently declined, and they are considered as Least Concern by the International Union for Conservation of Nature (IUCN), however this assessment still classifies the Australian and New Zealand species as conspecific.<br>We sequenced the genome of an adult Fairy penguin from Phillip Island, Victoria, Australia (provided by Peter Dann) to a depth of approximately 137x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.28Gb, with the contig and scaffold N50 values of 119.59Kb and 27.92Mb respectively. We identified 17188 protein-coding genes.
DOI: 10.5524/102182
title: Genomic data from King penguin (<em>Aptenodytes patagonicus</em>).

description: The King penguin is the second largest species of penguin. They have a circumpolar range, breeding on the subantarctic islands at the northern reaches of Antarctica, South Georgia, and other temperate islands. They were heavily hunted for oil on Macquarie Island. King penguins appear to have suffered a major population declines, and 70% are expected to disappear in the next eighty years, however they are still considered as Least Concern by the International Union for Conservation of Nature (IUCN).<br>We sequenced the genome of an adult King penguin from Fortuna Bay, South Georgia (provided by Tom Hart) to a depth of approximately 120x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.24Gb, with the contig and scaffold N50 values of 114.03Kb and 2.77Mb respectively. We identified 15195 protein-coding genes.
DOI: 10.5524/102324
title: Supporting data for "Making Common Fund data more findable: Catalyzing a Data Ecosystem"

description: The Common Fund Data Ecosystem (CFDE) has created a flexible system of data federation that enables users to discover datasets from across the U.S. National Institutes of Health Common Fund without requiring that data owners move, reformat, or rehost those data. The CFDEs federation system is centered on a catalog that ingests metadata from individual Common Fund Programs Data Coordination Centers (DCCs) into a uniform metadata model that can then be indexed and searched from a centralized portal. This uniform Crosscut Metadata Model (C2M2) supports the wide variety of data types and metadata terms used by the individual DCCs and is designed to enable easy expansion to accommodate new data types. We describe its use to ingest and index data from eleven DCCs.
DOI: 10.5281/zenodo.12949169
title: LMDZ6iso output - Antarctic water stable isotopes in the global atmospheric model LMDZ6: from climatology to boundary layer processes
DOI: 10.5281/zenodo.12951514
title: LMDZ6iso output - Antarctic water stable isotopes in the global atmospheric model LMDZ6: from climatology to boundary layer processes
DOI: 10.5281/zenodo.14205731
title: LMDZ6iso output - Antarctic water stable isotopes in the global atmospheric model LMDZ6: from climatology to boundary layer processes