cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/dwktj998rm
title: Histopathology, Wounds and Scars Pictures Post Wounding  

description: 9(a) Ultraviolet C/Hydrofibre Silver group 
9(b) Hydrofibre Silver group
9(c) Ultraviolet C group and 
9(d) Control group
10(a) Ultraviolet C/Hydrofibre Silver group, 
10(b) Hydrofibre Silver group
10(c) Ultraviolet C group and 
10(d) Control group
DOI: 10.17632/jfrdpnb945
title: Benchmark for SHACL Performance in Knowledge Bases

description: Benchmark for SHACL Performance in Knowledge Bases. The data contains: - the file with the 58 SHACL shapes, - the bigger N-Quads files are segments of the Tyrolean Knowledge Graph, containing 30 million, as well as 23,325,924 quads, - the smaller N-Quads file is a segment of the other file that contains exactly 1 million quads. We use this one for our evaluation with the benchmark.
DOI: 10.6084/m9.figshare.1190916.v1
title: Grassland Plant Specie Sampling

description: Description and Methods: Data was collected, with the help of Arlene Tran, in a York University grassland abundant with different species of insects, plants, trees, and grass. Data was collected on a hot and sunny September afternoon, in areas exposed to both sun and shade. A target plant specie that was both visible and abundant in the grassland was selected as the specie to be examined. Transects were used in order to collect the data; the transect was randomly laid down in the grassland. When the target plant specie was observed along the transect tape, the distance on the transect tape it appeared at, the height of the plant, the number of leaves and flowers on the plant, and the rate of abundance of other species around that plant was observed and recorded. 50 plant individuals were observed. This data was collected in order to explore the different plant populations and communities within the grassland.
DOI: 10.6084/m9.figshare.19650249.v1
title: ZYP1 data

description: Mutant (ZYP1) microscopy data for The synaptonemal complex controls cis-versus trans-interference in coarsening-based meiotic crossover patterning
DOI: 10.6084/m9.figshare.24952503.v1
title: Phishing Email: 11 Curated Datasets

description: We have curated 11 datasets. The Nazario and Nigerian Fraud datasets contain only phishing emails.Cite this dataset:A. I. Champa, M. F. Rabbi, and M. F. Zibran, “Why phishing emails escape detection: A closer look at the failure points,” in 12th International Symposium on Digital Forensics and Security (ISDFS), 2024, pp. 1–6 (to appear).or@inproceedings{champa2024why, title={Why Phishing Emails Escape Detection: A Closer Look at the Failure Points}, author={Champa, Arifa I and Rabbi, Md Fazle and Zibran, Minhaz F}, booktitle={12th International Symposium on Digital Forensics and Security (ISDFS)}, pages = {1--6 (to appear)}, year={2024}}
DOI: 10.6084/m9.figshare.28428494.v1
title: DDoS Detection

description: With the development of smart grids, power grid systems are gradually becoming morecomplex. This poses new challenges for ensuring the security of power grid systems.The prevailing approach to network intrusion detection relies heavily on manuallyengineered features, often requiring rigorous expertise and struggling to accommodate adiverse array of attack types. In response to this challenge, we employed a windowingtechnique to segment network traffic data into manageable samples. These samples aresubsequently input into the Informer network for feature extraction and classification,facilitating intrusion detection. Our proposed algorithm simultaneously considers boththe temporal information of sessions and overall attention information, autonomouslylearning features from traffic data. Experimental evaluations using CICIDS-2018network traffic data demonstrate the algorithm’s effectiveness in DDoS attack detection,yielding promising results.
DOI: 10.17632/2bh5fchcv6
title: Human squamous cell carcinoma, Visium

description: Visium experiments on a squamous cell carcinoma from a human donor. Four serial 10 µm sections spaced 150 µm apart. Processed sequencing data from 10X Genomics Space Ranger version 1.0.0. A skin biopsy was collected from a patient with suspected squamous cell carcinoma after obtaining informed consent. The diagnosis was histologically verified by a board-certified dermatopathologist. The study protocol was approved by the Institutional Review Board at Stanford University Medical Center (protocol #21750).
DOI: 10.6084/m9.figshare.18586565.v1
title: Glomeruli dataset

description: Data collectet in H2020 project AIDPATH.
DOI: 10.6084/m9.figshare.26172316.v1
title: Discriminant Analysis of Occupational Performance Characteristics in Patients with Major Depressive Disorders and Healthy Individuals

description: (This study conducted a retrospective survey to compare task performance in occupational therapy between patients with MDD and healthy subjects. It investigated whether specific occupational performance characteristics can effectively distinguish MDD patients from healthy individuals.)The present study revealed that four occupational performance characteristics were extracted to discriminate between depressed patients and normal subjects. The AUC values of the ROC curves generated from the discrimination scores indicated that their discriminative ability was of very high accuracy.Specific occupational performance characteristics are effective in distinguishing MDD patients from healthy individuals and may serve as valuable indicators for screening high-risk subjects in daily life.This novel insight, centered on behaviors not typically assessed through conventional methods, offers a new avenue for evaluating MDD. Looking ahead, there is potential to extend the application of occupational performance characteristics to other mental disorders beyond MDD.
DOI: 10.6084/m9.figshare.28481027.v1
title: Supplementary Material for: Variations in Characteristics and Clinical Outcomes of Esophageal Squamous Cell Carcinoma Among Asian American

description: Introduction: Research on esophageal squamous cell carcinoma (ESCC) in Asian American (AsA) populations frequently aggregates data, thereby overlooking the considerable diversity inherent within this demographic. The aim of this study was to investigate the variations in ESCC characteristics and clinical outcomes among AsA. Methods: Patients diagnosed with ESCC were identified through the Surveillance, Epidemiology, and End Results (SEER) 17 database. The AsA cohort was categorized into specific subgroups: Chinese, Japanese, Filipino, Korean, Vietnamese, South Asian (Asian Indian or Pakistani), and other Asian. The Kaplan-Meier method was employed to estimate unadjusted overall survival (OS), while Cox proportional hazards models were utilized to assess adjusted OS. Results: A total of 9,252 patients were included, with the cohort comprising 1,100 Asian, 2,135 Black, 951 Hispanic, and 5,066 White individuals. AsA patients demonstrated the highest unadjusted OS (P &lt; .001). The Vietnamese subgroup exhibited the highest proportion of male patients at 92.1%. South Asian patients showed the highest unadjusted OS among the distinct Asian subgroups, with survival rates of 56% at one year (95% CI 49–64), 31% at three years (95% CI 25–40), and 23% at five years (95% CI 17–32). After adjusting, only Chinese and South Asian patients displayed significantly improved OS compared to the White reference group (P &lt; .05). Conclusion: Considerable disparities in ESCC characteristics and outcomes exist among AsA populations. Socioeconomic, genetic, and epigenetic factors may influence these differences. Further research is essential to clarify the mechanisms of this discrepancy.
DOI: 10.6084/m9.figshare.7034786.v1
title: Supplementary Materials

description: Article Supplement
DOI: 10.6084/m9.figshare.7403732.v3
title: CGO2019-AE

description: A Code Generator for High-Performance Tensor Contractions on GPUs
DOI: 10.17632/8j9sndncfr
title: Roe deer and muntjac Density Surface Model dataset

description: This dataset consists of roe deer and muntjac distance sampling data collected in Thetford forest in 2018. Roe deer andmuntjac distance sampling data file are to be used to calculate detection function and are in "flatfile format", as described in R package "Distance". Localities data are used to performed density surface model analysis, so they part of the file is set up in the standard format to be able to run density surface models as described in the R package "dsm". An extra series of columns in the dataset indicate the proportion of arable land extracted from a buffer built around the trasenct segment with buffer radii ranging from 100m to 700m (at 50m step increment). These columns are named "Arable_" plus the buffer radius. Similarly, columns indicating recreational activity extracted around cull locations (100-700m buffer radius at 50m steps increments) are labelled "Recreational_" plus the buffer radius. Further columns indicate proportion of calcareous soil (Calcareous_), young stands (YoungS_), mature stands (MatureS_) and grasslands (Grasslands_).
DOI: 10.17632/ypwstrpz4f
title: Data set for continuous evaluation project 

description: Survey data of the students for the continuous evaluation project
DOI: 10.6084/m9.figshare.23614629.v1
title: Raw data and calculations in Excel format.

description: This work uses projected population data from 2022 World Population Prospects published by UN DESA.
DOI: 10.6084/m9.figshare.26210759.v1
title: ruminant_eukaryotes_protein.tar.gz

description: Metagenomics, particularly genome-resolved metagenomics, has significantly deepened our understanding of various microbes, including the unculturable ones, illuminating their taxonomic and functional diversity and roles in ecology, physiology, and evolution. However, the eukaryotic microbes within various microbiomes, including those in the mammalian gastrointestinal (GI) tract, remain relatively underexplored in metagenomic studies due to the lack of reference genome databases and robust bioinformatics tools. We curated several ruminant eukaryotic protein databases, significantly enhancing our ability to distinguish the functional roles of ruminant fungi and protozoa from those of prokaryotes.
DOI: 10.6084/m9.figshare.5128744.v1
title: Supplementary Material for: Femoral Access and Delivery of Continuous Renal Replacement Therapy Dose

description: <b><i>Aims:</i></b> The study aims to describe the use of dialysis catheters in critically ill patients treated with continuous renal replacement therapy (CRRT) and to study the impact of femoral versus non-femoral access on CRRT dose. <b><i>Methods:</i></b> Statistical analysis and predictive modelling of data from the Randomized Evaluation of Normal vs. Augmented Level renal replacement therapy trial. <b><i>Results:</i></b> The femoral vein was the first access site in 937 (67%) of 1,399 patients. These patients had higher Acute Physiology and Chronic Health Evaluation and Sequential Organ Failure Assessment scores (p = 0.009) and lower pH (p &lt; 0.001) but similar mortality to patients with non-femoral access (44 vs. 45%; p = 0.63). Lower body weight was independently associated with femoral access placement (OR 0.97, 95% CI 0.96-0.98). Femoral access was associated with a 1.03% lower CRRT dose (p = 0.05), but a 4.20% higher dose was achieved with 13.5 Fr catheters (p = 0.03). <b><i>Conclusions:</i></b> Femoral access was preferred in lighter and sicker patients. Catheter gauge had greater impact than catheter site in CRRT dose delivery. Video Journal Club “Cappuccino with Claudio Ronco” at http://www.karger.com/?doi=439581.
DOI: 10.25380/iastate.25872271.v1
title: Data from: Spatial and temporal migratory connectivity of two sympatrically breeding wood-warblers with geographically discordant population trends

description: This dataset includes raw and processed geolocator data, spatial analysis inputs, and R code used to estimate migratory connectivity and space use across the annual cycle for Worm-eating Warblers (Helmitheros vermivorum) and Louisiana Waterthrush (Parkesia motacilla). We collected data at four breeding sites across the species’ ranges using light-level geolocators.
DOI: 10.6084/m9.figshare.10318823.v1
title: Panel Discussion: Who's afraid of data misuse? #SciData19

description: Grace Baynes chairs the panel discussion entitled 'Who's afraid of data misuse?' at Better Science through Better Data 2019 (#SciData19). <br>The panelists are:<br>- Yves-Alexandre de Montjoye, Imperial College London- Sabina Leonelli, University of Exeter- Shelley Stall, American Geophysical Union<br>The video recording, live scribe illustrations plus Grace and Sabina's presentation slides are included.<br>
DOI: 10.6084/m9.figshare.12389750.v3
title: Digitisation of Yeh and Lindau Photoionisation Cross Section Tabulated Data

description: This document provides a digitised version of the tabulated atomic subshell photoionisation cross section data calculated by Yeh and Lindau (1985). The data from the original paper was manually mined and deposited into an Excel spreadsheet. <br><br>
DOI: 10.6084/m9.figshare.1313697.v4
title: The Last Line Effect -- Erors in Micro-Clones

description: A dataset containing all errors in micro-clones generated by the PVS-Studio tool, and our statistical analyses on them.
DOI: 10.6084/m9.figshare.13377671.v1
title: Genome assembly of Cucumis hystrix

description: file introduction:hystrix.genome.fasta.gz Genome assembly of Cucumis hystrix (v1)hystrix.pep.fa.gz Protein sequences (v1)<br>hystrix.cds.fa.gz CDs (v1)<br>hystrix.gff3.gz (v1)
DOI: 10.6084/m9.figshare.5127559.v1
title: Supplementary Material for: Estimated GFR Is Biased by Non-Traditional Cardiovascular Risk Factors

description: <b><i>Background:</i></b> Estimated glomerular filtration rate (eGFR) based on either cystatin C or creatinine performs similarly in estimating measured GFR, but associate differently with cardiovascular disease (CVD) and mortality. This could be due to confounding by non-GFR-related traits associated with cystatin C and creatinine levels. We investigated non-GFR-related associations between eGFR and two types of nontraditional risk factors for CVD and death: L-arginine/dimethylarginine metabolism and insulin resistance. <b><i>Methods:</i></b> GFR was measured via iohexol clearance in a cross-sectional study of 1,624 middle-aged persons from the general population without CVD, diabetes or chronic kidney disease. The dimethylarginines were measured using liquid chromatography tandem mass spectrometry (LC-MSMS). Insulin resistance was determined by the homeostasis model assessment (HOMA-IR). <b><i>Results:</i></b> Asymmetric dimethylarginine (ADMA), symmetric dimethylarginine (SDMA), the L-arginine/ADMA ratio and insulin resistance were associated with creatinine-based eGFR after accounting for measured GFR in multivariable adjusted analyses. The cystatin C-based eGFR showed a similar residual association with SDMA; an oppositely directed, borderline significant association with ADMA; and a stronger residual association with insulin resistance compared with eGFR based on creatinine. <b><i>Conclusion:</i></b> Both creatinine- and cystatin C-based eGFR are influenced by nontraditional risk factors, which may bias risk prediction by eGFR in longitudinal studies.
DOI: 10.17632/cr75b3gcf7
title: Fourier Series Blood Pressure

description: test
DOI: 10.17632/f4b2ykfv56
title: The scRNA-seq datas of foreskin mesenchymal stromal cells  and human umbilical cord mesenchymal stromal cells

description: First, we digested the 3rd passage of foreskin mesenchymal stromal cells (FSMSCs) and human umbilical cord mesenchymal stromal cells (HuMSCs) with the cell survival rate higher than 80%. Second, the concentration of cell suspension were adjusted to 1×106 cells/ml for 10X Genome Single Cell Platform (Single Cell 3’ library and Gel Bead Kit V3). Then, the samples were processed as follows: GEMs creation, thermal cycling, post cycling cleanup, cDNA amplication, library preparation, library quantification and sequencing on Illumina Hiseq3000. Finally, the result of sequencing was mapped to GRCh38 human genome, and reads were counted by cellranger software (version 3.1.0).
DOI: 10.6084/m9.figshare.19596157.v1
title: Gridded mean annual runoff for 2021 at 250m resolution

description: Gridded mean annual global runoff for 2021 in mm/day at 250m resolution generated from SMAP, GPM, and GCN250 global curve number datasets.
DOI: 10.6084/m9.figshare.26502529.v1
title: Complete Dataset (Anonymised)

description: <b>Background and objectives:</b> CS-ADL (Cognitive Stimulation in Activities of Daily Living) is an occupational therapist-led group cognitive stimulation program for people living with mild-to-moderate dementia. It aims to enhance and maintain participants’ skills in activities of daily living (ADLs). Previous research has identified participants and caregivers perceive CS-ADL to be an acceptable and beneficial intervention; however, research is required to evaluate the effectiveness of intervention. This study investigated the feasibility of conducting a randomised controlled trial comparing the effect of CS-ADL to treatment-as-usual (TAU).<b>Methodology: </b>This study used a pilot, parallel, non-randomised controlled design. Data regarding participants’ ADL functioning, cognition, communication, quality of life (QOL) and neuropsychiatric symptoms (NPS) were collected at baseline and follow-up. Data were analysed using descriptive and inferential statistics.<b>Results:</b> Thirteen participants were allocated to the intervention group and three were allocated to the control group. A significant reduction in caregiver burden was observed in the treatment group at follow-up (<i>p</i>=0.04). A significant correlation between baseline cognitive functioning and changes in ADL functioning at follow-up were also identified in the treatment group (<i>p</i>=0.03). No other significant findings were reported.<b>Conclusions: </b>Preliminary results indicate CS-ADL may reduce caregiver burden and provide greater benefit to ADL outcomes for individuals with less severe cognitive impairment. However, no significant changes in ADL functioning were observed in this study. Further research is necessary to confirm these findings. Additionally, challenges in recruitment suggest modification of the study design is required to enhance feasibility and rigour of future trials.
DOI: 10.6084/m9.figshare.29126309.v1
title: kaiju results for CR11Fmax.out.html

description: Metagenomic analysis of bacteriophages from the Agulhas Current
DOI: 10.6084/m9.figshare.5402044.v2
title: Anemia data, hemodialysis patients

description: CSV files contain information on gender, height and weight of the patients, measured pre- and post-dialysis hemoglobins (measured with CritLine III monitors) and simulated hemoglobin values using a physiological based mathematical model for erythropoiesis and erythropoietin doses.<br>Further, there are several python files that show a basic implementation of the parameter identification approach used to estimate individual model parameters from the patient data. This also includes an approximation, based on semigroups, of the system of partial differential equations describing the physiological model. The .docx file explains in a nutshell how to use the parameter identification code.
DOI: 10.6084/m9.figshare.8288006.v1
title: Supplementary Material for: Improvements in Body Composition after 4 Years of Growth Hormone Treatment in Adult-Onset Hypopituitarism Compared to Age-Matched Controls

description: <b><i>Background/Aims:</i></b> It is unknown whether long-term growth hormone replacement therapy (GHRT) affects body composition in an age- or sex-dependent manner. We aimed to study the effects of 4 years of GHRT on body composition in a large cohort of patients with hypopituitarism compared to a reference population matched by age and sex. <b><i>Methods:</i></b> A total of 964 GH-deficient adults from KIMS (Pfizer International Metabolic Database) with adult-onset hypopituitarism, adequately replaced with all pituitary hormones except for GH at baseline were included. A random sample of the general population (2,301 subjects) from a similar time period was used as reference. Patients and controls were grouped by sex in 5 age cohorts of 10 years. Main outcome measures were changes in BMI and waist circumference after 4 years of GHRT. <b><i>Results:</i></b> In younger patients (28–47 years), 4 years of GHRT resulted in a BMI increase similar to that observed in the reference population, but older patients (48–67 years) had significantly less BMI increase than age-matched healthy controls. Significant differences were seen in waist circumference in patients of all age cohorts who showed virtually no change after 4 years of GHRT compared to approximately 4 cm of increase in the reference population. <b><i>Conclusion:</i></b> Four years of GHRT resulted in improvements in BMI and waist circumference in patients with adult-onset hypopituitarism compared to age-matched controls observed during the same follow-up time. Despite these beneficial effects on body composition, BMI and waist circumference remained higher in patients on GHRT compared to healthy controls.
DOI: 10.17632/2r232jpfb2
title: Dataset of Indoor Air Pollutants using Low-Cost Sensors

description: Indoor air pollutant concentration data is collected for all the seasons in Pune city, India, from internet of things-based system built using low-cost sensors. The raw data contains 1,73,468 records collected from Nov 2020 to July 2022. Air pollutant PM2.5 (Particulate Matter) is measured using GP2Y1010AU0F Dust Smoke Particle Sensor, NO2 (Nitrogen Dioxide), NH3 (Ammonia) and CO (Carbon Monoxide) pollutant measured using MICS-6814 sensor. Ozone (O3) measured using MQ131 Semiconductor Sensor. Temperature, Humidity measured using BME 280 sensor. Measurement units of NH3 is PPM, NO2 in PPM, CO in PPM, PM2.5 in ug/m3, Temperature in Celsius, Pressure in hPa, Humidity in RH, Ozone in PPB. This data can be used for study and evaluations of prediction models, low-cost sensor data and calibration. It can be used for the study of the pollutant’s patterns in COVID-19 pandemic.  It will help policymakers to develop policies to monitor air pollution impact.
DOI: 10.17632/br5k8yd8dx
title: Sulfide compositions of young Chang’e-5 basalts and implications for sulfur isotopes in lunar basalt sources

description: Table S1. Mineral proportion, size distribution of troilites and mineral assciations of troilites in CE-5 basalt Table S2. Chemical compositions (wt.%) of troilites and metals in the CE-5 soil fragments Table S3. The major compositions (wt.%) of silicate phases associated with troilites in the CE-5 lunar soil fragments Table S4. Sufur isotopes of troilites from the CE-5 soil fragments, lunar meteorites, iron meteorites and standards Table S5. S isotopic compositions of troilites in the Chang'e-5 basaltic fragments. Table S6 Compiled sulfur isotope data from bulk rock analyses.
DOI: 10.17632/gvbt4byrcs
title: Supplementary Material: Clustering and Multinomial Logistic Regression based on Neural Networks

description: R-Code of the analysis including comments, complete list of implemented R packages, raw data set
DOI: 10.6084/m9.figshare.19983788.v3
title: Re-annotation of the Liriodendron chinense genome identifies novel genes and improves genome annotation quality

description: Re-annotation gff3 format file and protein sequence of <em>Liriodendron chinense</em> genome.
DOI: 10.6084/m9.figshare.2062140.v1
title: North American borehole temperature profiles suitable for climate studies

description: <pre>Files contained inside the databases are borehole temperature profiles valid for climate studies. They present a set of depths (z) with their associated temperature T(z). Attached to the profiles there are important supplementary metadata such as coordinates, logging date or the person who measured the profile. The dataset is presented in two formats, as Comma-separated value (CSV) files and as TABULAR text files. Example codes to load the different elements are also included in the CODE folder.</pre>