cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7079071
title: Segmentation models and experimental results on segmenting slide scans of diatom preparations from river Menne

description: This archive contains the models and the results of the deep learning experiments published in Kloster et al. 2022: Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint. The folders contain models and results of each of the 24 training runs, the files “metrics.experiments.pt[prediction score threshold].csv contain segmentation score thresholds the models obtained on unknown evaluation data. The data pertaining to each model is stored in a separate folder. Its name follows the convention “experiment.[model architecture].[tiling method].[dataset size].[timestamp]”. Please note that the naming of the tiling method differs from the manuscript; “fixed” refers to fixed-stride tiling, “objectcentred” object-based positioning, and “objectcentred_with_cropped” to object-based positioning + object integrity constraint. Dataset size “10p” refers to a 10% subsample of the complete training data set, “25p” to a 25% subsample and so on. Each folder contains the best performing model of the corresponding training run as pth (Mask R-CNN, PyTorch) or h5 (U-Net, Tensorflow/Keras) file, along with a files describing setup and conduction of the training. Subfolders “test_images_segmented*” contain the segmentation predicted by the models on the evaluation data. These are supplied as 1.) mask image either with the intensity value representing the prediction score (score 0.0 – 1.0 = intensities 0 – 255) or thresholded by the prediction score threshold given in the folder name; 2.) input image overlayed with ground truth (red) and segmentation mask (green), resulting in TP marked in yellow; 3.) a CSV file giving info on the filenames and the segmentation performance metrics. Please refer to the manuscript for further details.
DOI: 10.5281/zenodo.7078938
title: Slide scans of diatom preparations from river Menne

description: This archive contains the slide scans used for the deep learning experiments published in Kloster et al. 2022: Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint. The diatom material was sampled at six different locations from the river Menne (Germany), cleaned/oxidized and mounted in Naphrax. Please refer to the manuscript for details. Each scan represents area of ca. 5 × 3.5 mm² scanned by an VS200 slide scanning microscope (Olympus Europa SE & Co. KG, Hamburg, Germany). 61 focal planes were imaged in bright-field mode at a distance of 0.28 µm each using a UPLXAPO60XO 60x/1.42 oil immersion objective. Focus stacking and stitching were performed with the built-in functions of the VS200 ASW software (v3.2.1). Subsequently the RGB color data was reduced to 8bit monochrome grayscale images. This process resulted in the six virtual slide images, each roughly 55,000 × 39,000 pixel. These images depict benthic diatoms Menne river comprising more than 110 different taxa (estimated by identifying a subset of specimens). The sampling of this stream was authorized by the Kreis Paderborn authorities through the 4032-20-450 permit.
DOI: 10.5281/zenodo.7078937
title: Slide scans of diatom preparations from river Menne

description: This archive contains the slide scans used for the deep learning experiments published in Kloster et al. 2022: Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint. The diatom material was sampled at six different locations from the river Menne (Germany), cleaned/oxidized and mounted in Naphrax. Please refer to the manuscript for details. Each scan represents area of ca. 5 × 3.5 mm² scanned by an VS200 slide scanning microscope (Olympus Europa SE & Co. KG, Hamburg, Germany). 61 focal planes were imaged in bright-field mode at a distance of 0.28 µm each using a UPLXAPO60XO 60x/1.42 oil immersion objective. Focus stacking and stitching were performed with the built-in functions of the VS200 ASW software (v3.2.1). Subsequently the RGB color data was reduced to 8bit monochrome grayscale images. This process resulted in the six virtual slide images, each roughly 55,000 × 39,000 pixel. These images depict benthic diatoms Menne river comprising more than 110 different taxa (estimated by identifying a subset of specimens). The sampling of this stream was authorized by the Kreis Paderborn authorities through the 4032-20-450 permit.
DOI: 10.5281/zenodo.7079005
title: Python scripts / Jupyter Notebooks and data for training segmentation models on slide scans of diatom preparations from river Menne

description: This archive contains the Jupyter Notebooks and data used for the deep learning experiments published in Kloster et al. 2022: Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint. The notebooks are numbered according to the order in which they are to execute. Please refer to the comments and documentation within the notebooks as well as to the manuscript for details. The data (image data, mask data & segmentation ground truth in COCO format for several different tiling strategies) is stored in separate subfolders corresponding with data usage (model training, validation, test) and tiling strategy. Please refer to the "readme" files for detailed information.
DOI: 10.5281/zenodo.7079004
title: Python scripts / Jupyter Notebooks and data for training segmentation models on slide scans of diatom preparations from river Menne

description: This archive contains the Jupyter Notebooks and data used for the deep learning experiments published in Kloster et al. 2022: Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint. The notebooks are numbered according to the order in which they are to execute. Please refer to the comments and documentation within the notebooks as well as to the manuscript for details. The data (image data, mask data & segmentation ground truth in COCO format for several different tiling strategies) is stored in separate subfolders corresponding with data usage (model training, validation, test) and tiling strategy. Please refer to the "readme" files for detailed information.
DOI: 10.34820/fk2/m0ipjp/ueqprs
title: The_role_of_business_incubator_on_cultiv.pdf

description: :unav
DOI: 10.34820/fk2/m0ipjp
title: The role of business incubator on cultivating innovation on start-ups: The case study of Bandung techno park (BTP) Indonesia

description: The importance of business incubators to support the growth of start-ups cannot be overemphasized especially in developing countries such as Indonesia. This study aims to determine the most appropriate model that is competent to provide an accurate depiction of the role of a business incubator in cultivating the innovation of startups during the incubation process. It is conducted by using the case of Bandung Techno Park (BTP) as one of the first business incubators in Indonesia that positioned itself as an incubator for technology-based startups. The data were collected by ensuring credibility, transferability, dependability, and conformability by adopting triangulation as the primary method. Informants were recruited from different stakeholder groups and provided with the opportunity to verify the result of the interviews. The findings show that there are none of the existing models that are able to provide a complete yet accurate depiction of BTP functioning. Almost all of the models suffer from lack of means to accommodate the learning process that must be undergone by start-ups during the incubation process. In order to respond to this gap, this study offered minimum requirements that must be satisfied by any incubator model.
DOI: 10.5281/zenodo.7107608
title: Data set containing the energy landscapes for GPO and GPP tropocollagen models under pulling forces

description: Energy landscapes (databases of minima and transition states) for GPO and GPP repeat collagen models under constant pulling forces as explored with OPTIM and PATHSAMPLE with an AMBER force field. The systems are seven GPO or GPP per chain capped with ACE and NME. The forces applied are 0 pN (F0), 10 pN (F1), 50 pN (F2), 100 pN (F3), 250 pN (F4), 500 pN (F5) and 750 pN (F6). The folders contains numerous analysis scripts and graphs. Most of these assume python with numpy and pandas, as well as cpptraj from AMBERTools.
DOI: 10.5281/zenodo.7107607
title: Data set containing the energy landscapes for GPO and GPP tropocollagen models under pulling forces

description: Energy landscapes (databases of minima and transition states) for GPO and GPP repeat collagen models under constant pulling forces as explored with OPTIM and PATHSAMPLE with an AMBER force field. The systems are seven GPO or GPP per chain capped with ACE and NME. The forces applied are 0 pN (F0), 10 pN (F1), 50 pN (F2), 100 pN (F3), 250 pN (F4), 500 pN (F5) and 750 pN (F6). The folders contains numerous analysis scripts and graphs. Most of these assume python with numpy and pandas, as well as cpptraj from AMBERTools.
DOI: 10.26249/fk2/5bt1iq/eicfbf
title: Opladen_validation_neutral_mood_induction.sav

description: :unav
DOI: 10.26249/fk2/5bt1iq/ya5lru
title: readme_validation_neutral_mood.txt

description: :unav
DOI: 10.26249/fk2/5bt1iq/u6arpv
title: Procedure_valdiation_neutral_mood.png

description: Procedure of the study
DOI: 10.26249/fk2/5bt1iq
title: Validating the Induction of Neutral Mood from Videos

description: In this experimental study, we aimed at validating the induction of neutral mood by means of participants rating of four 10-minute video sequences showing landscape scenes. The induction of neutral mood is part of a larger experiment (preregistration: drks.de. ID: DRKS00025780) funded by the German Research Foundation (Deutsche Forschungsgemeinschaft, DFG).
DOI: 10.5281/zenodo.6914643
title: An Exploratory Study of Documentation Strategies for Product Features in Popular GitHub Projects (Replication Package)

description: This is the replication package for the paper titled 'An Exploratory Study of Documentation Strategies for Product Features in Popular GitHub Projects' accepted for the NIER track at ICSME 2022. Full abstract:<br> [Background] In large open-source software projects, development knowledge is often fragmented across multiple artefacts and contributors such that individual stakeholders are generally unaware of the full breadth of the product features. However, users want to know what the software is capable of, while contributors need to know where to fix, update, and add features. [Objective] This work aims at understanding how feature knowledge is documented in GitHub projects and how it is linked (if at all) to the source code. [Method] We conducted an in-depth qualitative exploratory content analysis of 25 popular GitHub repositories that provided the documentation artefacts recommended by GitHub’s Community Standards indicator. We extracted strategies used to document software features in textual artefacts and which strategies were used to link the feature documentation with source code. [Results] We observed feature documentation in all studied projects in artefacts such as READMEs, wikis, and website resource files. However, the features were often described in an unstructured way. Additionally, tracing techniques to connect feature documentation and source code were rarely used. [Conclusions] Our results suggest a lacking (or a low-prioritised) feature documentation in open-source projects, little use of normalised structures, and a rare explicit referencing to source code. As a result, product feature traceability is likely to be very limited, and maintainability to suffer over time. Citation information:<br> coming soon
DOI: 10.5281/zenodo.7024757
title: An Exploratory Study of Documentation Strategies for Product Features in Popular GitHub Projects (Replication Package)

description: This is the replication package for the paper titled 'An Exploratory Study of Documentation Strategies for Product Features in Popular GitHub Projects' accepted for the NIER track at ICSME 2022. Full abstract:<br> [Background] In large open-source software projects, development knowledge is often fragmented across multiple artefacts and contributors such that individual stakeholders are generally unaware of the full breadth of the product features. However, users want to know what the software is capable of, while contributors need to know where to fix, update, and add features. [Objective] This work aims at understanding how feature knowledge is documented in GitHub projects and how it is linked (if at all) to the source code. [Method] We conducted an in-depth qualitative exploratory content analysis of 25 popular GitHub repositories that provided the documentation artefacts recommended by GitHub’s Community Standards indicator. We extracted strategies used to document software features in textual artefacts and which strategies were used to link the feature documentation with source code. [Results] We observed feature documentation in all studied projects in artefacts such as READMEs, wikis, and website resource files. However, the features were often described in an unstructured way. Additionally, tracing techniques to connect feature documentation and source code were rarely used. [Conclusions] Our results suggest a lacking (or a low-prioritised) feature documentation in open-source projects, little use of normalised structures, and a rare explicit referencing to source code. As a result, product feature traceability is likely to be very limited, and maintainability to suffer over time. Citation information:<br> coming soon
DOI: 10.5281/zenodo.7107674
title: An Exploratory Study of Documentation Strategies for Product Features in Popular GitHub Projects (Replication Package)

description: This is the replication package for the paper titled 'An Exploratory Study of Documentation Strategies for Product Features in Popular GitHub Projects' accepted for the NIER track at ICSME 2022. Full abstract:<br> [Background] In large open-source software projects, development knowledge is often fragmented across multiple artefacts and contributors such that individual stakeholders are generally unaware of the full breadth of the product features. However, users want to know what the software is capable of, while contributors need to know where to fix, update, and add features. [Objective] This work aims at understanding how feature knowledge is documented in GitHub projects and how it is linked (if at all) to the source code. [Method] We conducted an in-depth qualitative exploratory content analysis of 25 popular GitHub repositories that provided the documentation artefacts recommended by GitHub’s Community Standards indicator. We extracted strategies used to document software features in textual artefacts and which strategies were used to link the feature documentation with source code. [Results] We observed feature documentation in all studied projects in artefacts such as READMEs, wikis, and website resource files. However, the features were often described in an unstructured way. Additionally, tracing techniques to connect feature documentation and source code were rarely used. [Conclusions] Our results suggest a lacking (or a low-prioritised) feature documentation in open-source projects, little use of normalised structures, and a rare explicit referencing to source code. As a result, product feature traceability is likely to be very limited, and maintainability to suffer over time. Citation information:<br> coming soon
DOI: 10.6084/m9.figshare.20377236
title: Facebook addiction and its related factors in medical students; Bangladesh context

description: This cross-sectional survey was conducted on 720 randomly selected medical students from eight public medical colleges from January to June 2022. Data were obtained using a semi-structured, self-reported questionnaire and analyzed using the SPSS v.23 programs. The Bergen Facebook Addiction Scale BFAS was used to assess Facebook addiction, while the Generalized Anxiety Disorder GAD-7, Patient Health Questionnaire PHQ-9, Perceived Stress Scale PSS10, Chen Internet Addiction Scale CIAS, and Pittsburg Sleep Quality Index PSQI was used to assess anxiety, depression, perceived stress, internet addiction, and sleep quality. Binary logistic regression was used to investigate the influence of several demographic, psychological, and behavioral characteristics on the likelihood of respondents being addicted to Facebook.
DOI: 10.5519/qd.3q63ebru
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8756 records)
DOI: 10.17909/fp8v-5705
title: Detached eclipsing binaries in compact hierarchical systems 

description: Eclipsing binary light curves used in the analysis of hierarchical triples. The variation on the light curves are caused by spots.
DOI: 10.6084/m9.figshare.21196228.v1
title: Recombination events in putative tail fibre gene in Litunavirus phages infecting Pseudomonas aeruginosa

description: DNA data matrices <br>
DOI: 10.34740/kaggle/ds/2499218
title: newtest
DOI: 10.20372/aau_rdr/msbc07/73vj7o
title: Tigist Misganaw's Row data.tab

description: :unav
DOI: 10.20372/aau_rdr/msbc07
title: LIVELIHOODS COPING MECHANISMS OF SOLID WASTE COLLAPSE INDUCED DISPLACED HOUSEHOLDS: THE CASE OF REPPIE ADDIS ABABA, ETHIOPIA

description: This row data was collected and analyzed for the accomplishment of MSc degree in Food Security and Development.
DOI: 10.5281/zenodo.7107775
title: Tables from Growth and Change of the World's Chemical Literature as Reflected in Chemical Abstracts

description: Tables 1-7 from: Donnell, E.P., "Growth and Change of the World’s Chemical Literature as Reflected in Chemical Abstracts." Publishing Research Quarterly 10, 38–46 (1994). https://doi.org/10.1007/BF02680377 By Edward P. Donnell, senior advisor for public relations, CAS division of American Chemical Society, 2540 Oletangy River Road, P. O. Box 3012, Columbus, OH 43210-0012. Transcribed by Andrew Dalke, 6 September 2022. The ods spreadsheet, generated by LibreOffice, contains the following sheets: Table 1 - Chemical Abstracts Publication Record 1907-93 Table 2 - Sources of Journal Literature Abstracted in Chemical Abstracts (as percentage of total journal literature abstracted) Table 3 - Language of Publication of Journal Literature Abstracted in Chemical Abstracts (as percentage of total journal literature abstracted) Table 4 - Country of Issue of Patents Abstracted in Chemical Abstracts (as a percentage of total patents abstracted) Table 5 - Country of Issue of Equivalent Patents Cited in Chemical Abstracts (as a percentage of total equivalent patents cited) Table 6 - Collective Indexes to Chemical Abstracts Table 7 - Growth of the CAS Chemical Registry System
DOI: 10.5281/zenodo.7107774
title: Tables from Growth and Change of the World's Chemical Literature as Reflected in Chemical Abstracts

description: Tables 1-7 from: Donnell, E.P., "Growth and Change of the World’s Chemical Literature as Reflected in Chemical Abstracts." Publishing Research Quarterly 10, 38–46 (1994). https://doi.org/10.1007/BF02680377 By Edward P. Donnell, senior advisor for public relations, CAS division of American Chemical Society, 2540 Oletangy River Road, P. O. Box 3012, Columbus, OH 43210-0012. Transcribed by Andrew Dalke, 6 September 2022. The ods spreadsheet, generated by LibreOffice, contains the following sheets: Table 1 - Chemical Abstracts Publication Record 1907-93 Table 2 - Sources of Journal Literature Abstracted in Chemical Abstracts (as percentage of total journal literature abstracted) Table 3 - Language of Publication of Journal Literature Abstracted in Chemical Abstracts (as percentage of total journal literature abstracted) Table 4 - Country of Issue of Patents Abstracted in Chemical Abstracts (as a percentage of total patents abstracted) Table 5 - Country of Issue of Equivalent Patents Cited in Chemical Abstracts (as a percentage of total equivalent patents cited) Table 6 - Collective Indexes to Chemical Abstracts Table 7 - Growth of the CAS Chemical Registry System
DOI: 10.57745/5jdewz
title: 2021-05_QUES-donnees-science-ouverte-VF.pdf

description: Trame du questionnaire "données et science ouverte"
DOI: 10.57745/tozeql
title: 2021_QSO_data-brut-diffusable.tab

description: :unav
DOI: 10.21343/1gaj-4645
title: Aggregated high resolution aerosol optical depth from stations and ships in the Svalbard area in the context of the REHEARSOL project
DOI: 10.14457/tu.the.2021.660
title: ปัญหาเรื่องผลของการชำระดอกเบี้ยเกินอัตรา

description: ในอดีตได้มีคำพิพากษาศาลฎีกาตัดสินว่าการที่ลูกหนี้ได้ชำระดอกเบี้ยเกินอัตรานั้นเป็นการชำระหนี้ตามอำเภอใจ ตามประมวลกฎหมายแพ่งและพาณิชย์ มาตรา 407 และ เป็นการชำระหนี้ที่ฝ่าฝืนต่อกฎหมายตามประมวลกฎหมายแพ่งและพาณิชย์ มาตรา 411 ซึ่งทั้งสองมาตราที่กล่าวมานี้เป็นเรื่องข้อยกเว้นของการคืนทรัพย์ตามหลักลาภมิควรได้ เมื่อศาลได้ตัดสินให้เข้าสองมาตราดังกล่าวนั้น จะส่งผลให้ลูกหนี้ที่ได้ชำระดอกเบี้ยเกินอัตราไปนั้นไม่สามารถเรียกคืนเงินที่ตนได้ชำระไปแล้วคืนมาได้ ซึ่งการตัดสินเช่นนี้ทำให้ผู้เขียนเห็นว่าทำให้ลูกหนี้เสียเปรียบและเป็นการสนับสนุนให้เจ้าหนี้เรียกดอกเบี้ยเกินอัตรา แต่ในปัจจุบันนั้น ศาลฎีกาได้ตัดสินเรื่องผลของการชำระดอกเบี้ยเกินอัตราโดยลูกหนี้ที่ได้ชำระดอกเบี้ยเกินอัตรานั้นสามารถได้รับดอกเบี้ยที่ตนได้ชำระไปแล้วคืนมาได้ ผ่านการนำดอกเบี้ยเกินอัตราที่ตนได้ชำระไปแล้วมาหักกับต้นเงินที่ยังค้างชำระอยู่ ซึ่งการที่ศาลฎีกาได้ตัดสินเช่นนี้ดูผิวเผินอาจจะมองว่าเป็นการพิพากษาตัดสินที่เป็นธรรมต่อลูกหนี้เป็นอย่างมาก แต่การตัดสินเช่นนี้ยังก่อให้เกิดปัญหาและช่องว่างได้เช่นเดียวกัน เนื่องจากศาลฎีกาได้ตัดสินว่าการที่ลูกหนี้ได้ชำระหนี้ไปนั้น เป็นการชำระหนี้ที่ฝ่าฝืนข้อห้ามตามกฎหมายตามประมวลกฎหมายแพ่งและพาณิชย์ มาตรา 411 ซึ่งเป็นการตัดสินเหมือนเช่นในอดีต ซึ่งโดยปกติแล้วถ้าศาลปรับให้เข้า มาตรา 411 ซึ่งเป็นข้อยกเว้นของการคืนทรัพย์ตามหลักลาภมิควรได้ ซึ่งเมื่อศาลได้ตัดสินเช่นนี้จะส่งผลให้สามารถตีความได้ว่าลูกหนี้ไม่สามารถเรียกดอกเบี้ยเกินอัตราที่ตนได้ชำระไปแล้วนั้นคืนมาได้รวมถึงการเอาไปดอกเบี้ยเกินอัตรานั้นไปหักกับต้นเงินด้วย ถึงแม้ศาลตัดสินว่าการที่เจ้าหนี้ซึ่งเป็นฝ่ายเรียกดอกเบี้ยเกินอัตราซึ่งเป็นการกระทำที่ฝ่าฝืนต่อกฎหมาย ทำให้เจ้าหนี้ไม่มีสิทธิได้รับดอกเบี้ยเกินอัตราดังกล่าวจึงต้องนำดอกเบี้ยนั้นไปหักกับต้นเงิน แต่การตัดสินเช่นนี้ทำให้เกิดประเด็นตามที่ผู้เขียนได้ศึกษา คือ คำพิพากษาของศาลฎีกาที่ตัดสินเรื่องผลของการชำระดอกเบี้ยเกินอัตราล่าสุดเช่นนี้ถือเป็นการทำให้หลักการของประมวลกฎหมายแพ่งและพาณิชย์มาตรา 411 เปลี่ยนไปหรือไม่ และ จากคำพิพากษาศาลฎีกาที่ตัดสินเรื่องผลของการชำระดอกเบี้ยเกินอัตราล่าสุด ถ้าเป็นกรณีมีการชำระดอกเบี้ยไปจนเกินต้นเงินไปแล้ว จะสามารถเรียกดอกเบี้ยเกินอัตราที่ได้ชำระคืนได้หรือไม่ ซึ่งผู้เขียนได้ศึกษาเรื่องผลของการชำระดอกเบี้ยเกินอัตราเปรียบเทียบกับแนวทางการตัดสินและกฎหมายของรัฐแคลิฟอร์เนีย ประเทศสหรัฐเมริกาและประเทศญี่ปุ่น ซึ่งทั้งสองประเทศนั้นมีประวัติศาศตร์ทางด้านกฎหมายที่ยาวนั้น ซึ่งเมื่อศึกษาเปรียบเทียบแล้วจะสามารถหาข้อสรุป และเสนอแนะแนวทางที่จะสามารถปรับปรุงและแก้ไขกฎหมายต่อไป