cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20226958
title: Additional file 2 of Increased CSF-decorin predicts brain pathological changes driven by Alzheimer’s Aβ amyloidosis

description: Additional file 2: Table S2. Proteins identified from label-free MS of mouse CSF.
DOI: 10.6084/m9.figshare.20226857
title: Additional file 25 of Combined nature and human selections reshaped peach fruit metabolome

description: Additional file 25: Table S24. Overlap of the lead SNPs of mGWAS in 2016 with selective sweeps.
DOI: 10.6084/m9.figshare.20226971
title: Additional file 9 of Identification and integrated analysis of lncRNAs and miRNAs in IPEC-J2 cells provide novel insight into the regulation of the innate immune response by PDCoV infection

description: Additional file 9. Enrichment analysis result of DEmiRNAs' target genes.
DOI: 10.6084/m9.figshare.20751417.v1
title: Dual-imaging-mode smart hydrogel information platform for illumination-independent covert decryption and read

description: Smart hydrogel with color responsiveness is envisioned as one of the most promising materials for advanced information encryption and decryption platform, but the illumination-dependent way of decrypting and reading information leads to the worrying of concealment in some particular scenarios. Herein, we proposed a smart hydrogel information platform with dual imaging modes by utilizing the accompanying behaviors in transparency change and heat releasing after crystallization of supercooled solution. For this smart hydrogel information platform, the hidden information could be written and decrypted by ink of ethylene glycol and decryption tool of seed crystal, respectively. Furthermore, in addition to the traditional optical imaging mode with the assistance of light illumination, the decrypted information on dual-imaging-mode hydrogel platform also could be read by thermal imaging mode in dark environment owing to the exothermic crystallization. The illumination-independent read mode based on heat radiation helps to improve the secrecy and safety of the decryption and read process. This investigation provides a facile and feasible strategy to design illumination-independent information platform that enables reading the encrypted information in secret.
DOI: 10.6084/m9.figshare.20226857.v1
title: Additional file 25 of Combined nature and human selections reshaped peach fruit metabolome

description: Additional file 25: Table S24. Overlap of the lead SNPs of mGWAS in 2016 with selective sweeps.
DOI: 10.6084/m9.figshare.20226902.v1
title: Additional file 7 of Combined nature and human selections reshaped peach fruit metabolome

description: Additional file 7: Table S6. Significantly changed metabolites in fruits between eastern and western improved varieties in 2015 (sheet 1) and 2016 (sheet 2).
DOI: 10.6084/m9.figshare.20226955.v1
title: Additional file 1 of Increased CSF-decorin predicts brain pathological changes driven by Alzheimer’s Aβ amyloidosis

description: Additional file 1: Table S1. Phosphorylation profiling of decorin treated and non-treated mouse primary neurons.
DOI: 10.6084/m9.figshare.20226881.v1
title: Additional file 31 of Combined nature and human selections reshaped peach fruit metabolome

description: Additional file 31: Table S30. Metabolites responsive to both drought and low temperature.
DOI: 10.6084/m9.figshare.20226971.v1
title: Additional file 9 of Identification and integrated analysis of lncRNAs and miRNAs in IPEC-J2 cells provide novel insight into the regulation of the innate immune response by PDCoV infection

description: Additional file 9. Enrichment analysis result of DEmiRNAs' target genes.
DOI: 10.6084/m9.figshare.20226866.v1
title: Additional file 28 of Combined nature and human selections reshaped peach fruit metabolome

description: Additional file 28: Table S27. Significantly changed metabolites in different levels of drought environments.
DOI: 10.6084/m9.figshare.20226968.v1
title: Additional file 8 of Identification and integrated analysis of lncRNAs and miRNAs in IPEC-J2 cells provide novel insight into the regulation of the innate immune response by PDCoV infection

description: Additional file 8. Enrichment analysis result of DElncRNAs' target genes.
DOI: 10.6084/m9.figshare.20751417
title: Dual-imaging-mode smart hydrogel information platform for illumination-independent covert decryption and read

description: Smart hydrogel with color responsiveness is envisioned as one of the most promising materials for advanced information encryption and decryption platform, but the illumination-dependent way of decrypting and reading information leads to the worrying of concealment in some particular scenarios. Herein, we proposed a smart hydrogel information platform with dual imaging modes by utilizing the accompanying behaviors in transparency change and heat releasing after crystallization of supercooled solution. For this smart hydrogel information platform, the hidden information could be written and decrypted by ink of ethylene glycol and decryption tool of seed crystal, respectively. Furthermore, in addition to the traditional optical imaging mode with the assistance of light illumination, the decrypted information on dual-imaging-mode hydrogel platform also could be read by thermal imaging mode in dark environment owing to the exothermic crystallization. The illumination-independent read mode based on heat radiation helps to improve the secrecy and safety of the decryption and read process. This investigation provides a facile and feasible strategy to design illumination-independent information platform that enables reading the encrypted information in secret.
DOI: 10.6084/m9.figshare.20226869.v1
title: Additional file 29 of Combined nature and human selections reshaped peach fruit metabolome

description: Additional file 29: Table S28. Metabolite content changes in peach fruits after cold treatment.
DOI: 10.6084/m9.figshare.20226845
title: Additional file 21 of Combined nature and human selections reshaped peach fruit metabolome

description: Additional file 21: Table S20. List of eQTL hotspots.
DOI: 10.6084/m9.figshare.20226872.v1
title: Additional file 2 of Combined nature and human selections reshaped peach fruit metabolome

description: Additional file 2: Table S1. List of 252 peach accessions used in this study.
DOI: 10.6084/m9.figshare.20226878
title: Additional file 30 of Combined nature and human selections reshaped peach fruit metabolome

description: Additional file 30: Table S29. Metabolite content changes in peach fruits after drought treatment.
DOI: 10.6084/m9.figshare.20226878.v1
title: Additional file 30 of Combined nature and human selections reshaped peach fruit metabolome

description: Additional file 30: Table S29. Metabolite content changes in peach fruits after drought treatment.
DOI: 10.6084/m9.figshare.20226854.v1
title: Additional file 24 of Combined nature and human selections reshaped peach fruit metabolome

description: Additional file 24: Table S23. Selective sweeps related to peach domestication and improvement, and differentiation between eastern and western improved varieties.
DOI: 10.6084/m9.figshare.20226979
title: Additional file 8 of Increased CSF-decorin predicts brain pathological changes driven by Alzheimer’s Aβ amyloidosis

description: Additional file 8: Table S7. Proteome comparison of AppNL-F/NL-F and AppNL-G-F/NL-G-F mice vs NC/MCI/AD (abnormal-amyloid/normal-tau subjects).
DOI: 10.6084/m9.figshare.21273841.v1
title: Additional file 1 of Genetic liability to obesity and peptic ulcer disease: a Mendelian randomization study

description: Additional file 1. Tabel S1. Proxies for SNPs not found in the outcome dataset (Forward MR); Tabel S2. Characteristics of the genetic variants associated with body mass index; Tabel S3. Characteristics of the genetic variants associated with waist-to-hip ratio; Tabel S4. Characteristics of the genetic variants associated with body mass index in replication analyses; Tabel S5. Characteristics of the genetic variants associated with waist-to-hip ratio in replication analyses; Tabel S6. Proxies for SNPs not found in the outcome dataset (Reverse MR); Tabel S7. Characteristics of the genetic variants associated with peptic ulcer disease; Tabel S8. Evaluation of heterogeneity and directional pleiotropy using different methods (Forward MR); Tabel S9. Evaluation of heterogeneity and directional pleiotropy in replication analyses (Forward MR); Table S10. Associations of genetic predisposition to PUD with risk of obesity in complementary Mendelian Randomization analyses (Reverse MR); Tabel S11. Evaluation of heterogeneity and directional pleiotropy using different methods (Reverse MR); Tabel S12. Evaluation of heterogeneity and directional pleiotropy in replication analyses (Reverse MR).
DOI: 10.6084/m9.figshare.11315348
title: MOESM1 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 1: Table S1. Accession numbers of WRKY genes in Ipomoea trifida and Arabidopsis thaliana.
DOI: 10.6084/m9.figshare.11315348.v1
title: MOESM1 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 1: Table S1. Accession numbers of WRKY genes in Ipomoea trifida and Arabidopsis thaliana.
DOI: 10.6084/m9.figshare.11315360
title: MOESM8 of Overexpression of TCP8 delays Arabidopsis flowering through a FLOWERING LOCUS C-dependent pathway

description: Additional file 8: Table S1. Primers used in this paper.
DOI: 10.6084/m9.figshare.11315360.v1
title: MOESM8 of Overexpression of TCP8 delays Arabidopsis flowering through a FLOWERING LOCUS C-dependent pathway

description: Additional file 8: Table S1. Primers used in this paper.
DOI: 10.6084/m9.figshare.11315363
title: MOESM3 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 3: Table S2. Informations of ItfWRKYs.
DOI: 10.6084/m9.figshare.11315363.v1
title: MOESM3 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 3: Table S2. Informations of ItfWRKYs.
DOI: 10.6084/m9.figshare.11315366
title: MOESM4 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 4: Table S3. Chromosomal locations and segmental duplication of ItfWRKY genes.
DOI: 10.6084/m9.figshare.11315366.v1
title: MOESM4 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 4: Table S3. Chromosomal locations and segmental duplication of ItfWRKY genes.
DOI: 10.6084/m9.figshare.9742502
title: Expression of Na/K-ATPase subunits in the human cochlea: a confocal and super-resolution microscopy study with special reference to auditory nerve excitation and cochlear implantation

description: <b>Background:</b> For the first time the expression of the ion transport protein sodium/potassium-ATPase and its isoforms was analyzed in the human cochlea using light- and confocal microscopy as well as super-resolution structured illumination microscopy. It may increase our understanding of its role in the propagation and processing of action potentials in the human auditory nerve and how electric nerve responses are elicited from auditory prostheses. <b>Material and methods:</b> Archival human cochlear sections were obtained from trans-cochlear surgeries. Antibodies against the Na/K-ATPase β1 isoform together with α1 and α3 were used for immunohistochemistry. An algorithm was applied to assess the expression in various domains. <b>Results:</b> Na/K ATPase β1 subunit was expressed, mostly combined with the α1 isoform. Neurons expressed the β1 subunit combined with α3, while satellite glial cells expressed the α1 isoform without recognized association with β1. Types I and II spiral ganglion neurons and efferent fibers expressed the Na/K-ATPase α3 subunit. Inner hair cells, nerve fibers underneath, and efferent and afferent fibers in the organ of Corti also expressed α1. The highest activity of Na/K-ATPase β1 was at the inner hair cell/nerve junction and spiral prominence. <b>Conclusion:</b> The human auditory nerve displays distinct morphologic features represented in its molecular expression. It was found that electric signals generated via hair cells may not go uninterrupted across the spiral ganglion, but are locally processed. This may be related to particular filtering properties in the human acoustic pathway.
DOI: 10.6084/m9.figshare.9742502.v1
title: Expression of Na/K-ATPase subunits in the human cochlea: a confocal and super-resolution microscopy study with special reference to auditory nerve excitation and cochlear implantation

description: <b>Background:</b> For the first time the expression of the ion transport protein sodium/potassium-ATPase and its isoforms was analyzed in the human cochlea using light- and confocal microscopy as well as super-resolution structured illumination microscopy. It may increase our understanding of its role in the propagation and processing of action potentials in the human auditory nerve and how electric nerve responses are elicited from auditory prostheses. <b>Material and methods:</b> Archival human cochlear sections were obtained from trans-cochlear surgeries. Antibodies against the Na/K-ATPase β1 isoform together with α1 and α3 were used for immunohistochemistry. An algorithm was applied to assess the expression in various domains. <b>Results:</b> Na/K ATPase β1 subunit was expressed, mostly combined with the α1 isoform. Neurons expressed the β1 subunit combined with α3, while satellite glial cells expressed the α1 isoform without recognized association with β1. Types I and II spiral ganglion neurons and efferent fibers expressed the Na/K-ATPase α3 subunit. Inner hair cells, nerve fibers underneath, and efferent and afferent fibers in the organ of Corti also expressed α1. The highest activity of Na/K-ATPase β1 was at the inner hair cell/nerve junction and spiral prominence. <b>Conclusion:</b> The human auditory nerve displays distinct morphologic features represented in its molecular expression. It was found that electric signals generated via hair cells may not go uninterrupted across the spiral ganglion, but are locally processed. This may be related to particular filtering properties in the human acoustic pathway.
DOI: 10.6084/m9.figshare.11315369
title: MOESM5 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 5: Table S4. Relative expression levels of ItfWRKYs in various tissues.
DOI: 10.6084/m9.figshare.11315369.v1
title: MOESM5 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 5: Table S4. Relative expression levels of ItfWRKYs in various tissues.
DOI: 10.6084/m9.figshare.11315378
title: MOESM6 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 6: Table S5. Expression pattern of ItfWRKYs under abiotic stresses.
DOI: 10.6084/m9.figshare.11315378.v1
title: MOESM6 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 6: Table S5. Expression pattern of ItfWRKYs under abiotic stresses.
DOI: 10.34740/kaggle/dsv/7635708
title: LUFlow Network Intrusion Detection Data Set
DOI: 10.6084/m9.figshare.21801139
title: Molecularly Self‐Fueled Nano-Penetrator for Nonpharmaceutical Treatment of Thrombosis and Ischemic Stroke

description: The source data include Figure 2c-d, g-h,j-l, Figure 3c-d,f-g,i-k, Figure 4c,f,h, Figure 5c-d, f, i, Figure 6c-d, h, Figure 7c-d,f, h, Supplementary Fig 4, 5b, 6, 7, 8, 9, 10, 12, 13b, 15, 16, 20, 23, 24, and 25.
DOI: 10.6084/m9.figshare.11315384
title: MOESM7 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 7: Table S6. Primers of the ItfWRKY genes and housekeeping gene for qRT-PCR.
DOI: 10.6084/m9.figshare.11315384.v1
title: MOESM7 of Genome-wide identification, characterisation and functional evaluation of WRKY genes in the sweet potato wild ancestor Ipomoea trifida (H.B.K.) G. Don. under abiotic stresses

description: Additional file 7: Table S6. Primers of the ItfWRKY genes and housekeeping gene for qRT-PCR.
DOI: 10.6084/m9.figshare.11315459
title: MOESM1 of QTL identification for seed weight and size based on a high-density SLAF-seq genetic map in peanut (Arachis hypogaea L.)

description: Additional file 1: Table S1 Phenotypic datasets of four seed traits in four environments. Table S2 Primer sequences of SSRs used in the present HDGM construction. Table S3 Genotyping of the RIL lines by SLAF and SSR markers. Table S4 Genetic positions of SLAF and SSR markers used for HDGM construction (XLS 10089 kb)
DOI: 10.6084/m9.figshare.11315459.v1
title: MOESM1 of QTL identification for seed weight and size based on a high-density SLAF-seq genetic map in peanut (Arachis hypogaea L.)

description: Additional file 1: Table S1 Phenotypic datasets of four seed traits in four environments. Table S2 Primer sequences of SSRs used in the present HDGM construction. Table S3 Genotyping of the RIL lines by SLAF and SSR markers. Table S4 Genetic positions of SLAF and SSR markers used for HDGM construction (XLS 10089 kb)
DOI: 10.6084/m9.figshare.11315474
title: MOESM3 of QTL identification for seed weight and size based on a high-density SLAF-seq genetic map in peanut (Arachis hypogaea L.)

description: Additional file 3: Table S7 Gene content within the QTL region I. Table S8 Gene content within the QTL region II. Table S9 SNPs loacted in two stable and pleiotropic QTL regions (XLS 402 kb)
DOI: 10.6084/m9.figshare.11315474.v1
title: MOESM3 of QTL identification for seed weight and size based on a high-density SLAF-seq genetic map in peanut (Arachis hypogaea L.)

description: Additional file 3: Table S7 Gene content within the QTL region I. Table S8 Gene content within the QTL region II. Table S9 SNPs loacted in two stable and pleiotropic QTL regions (XLS 402 kb)
DOI: 10.6084/m9.figshare.11315495
title: MOESM1 of Prevalence of fluoroquinolone resistance and mutations in the gyrA, parC and parE genes of Riemerella anatipestifer isolated from ducks in China

description: Additional file 1: Table S1. Information on the mutation sites in the gyrA, parC and parE genes of R. anatipestifer
DOI: 10.6084/m9.figshare.11315495.v1
title: MOESM1 of Prevalence of fluoroquinolone resistance and mutations in the gyrA, parC and parE genes of Riemerella anatipestifer isolated from ducks in China

description: Additional file 1: Table S1. Information on the mutation sites in the gyrA, parC and parE genes of R. anatipestifer
DOI: 10.6084/m9.figshare.18131247
title: A- and B-subgenome characterisation of sucrose synthase family proteins and functional identification of <i>MaSUS2.2</i> reveals its involvement in the starch accumulation in banana fruit

description: Sucrose synthase (SUS) is one of the most important enzymes catalysing the synthesis and cleavage of sucrose, and it also plays a crucial role in multiple plant biological processes. However, SUS has been scarcely reported in banana which accumulates large amounts of starch in its fruit. In this genome-wide study on banana, nine <i>SUS</i> genes were identified in each of the two subgenomes (A and B) for the first time, which were clustered into three distinct groups. Those in the group II underwent further duplications. In the transcriptome analysis of Baxijiao (BX, AAA) and Fenjiao (FJ, ABB) banana, four <i>MaSUS</i>s (<i>MaSUS-2.1</i>, <i>-2.2</i>, <i>-2.3</i>, and -<i>3.2</i>) and five <i>MbSUS</i>s (<i>MbSUS-2.1</i>, <i>-2.2</i>, <i>-2.3</i>, <i>-2.4</i>, and <i>-3.2</i>) were expressed during fruit development, with <i>MaSUS2.2</i>/<i>MbSUS2.2</i> being the most highly expressed. Transient overexpression of <i>MaSUS2.2</i> resulted in a significant increase in its transcription, which was consistent with significantly enhanced starch content in banana fruits. Its function was further identified by its transient silencing expression in banana fruit discs, which led to a significant reduction in total starch content. Taken together, the results show that multiple <i>SUS</i> genes, especially <i>SUS2.2</i>, play an important role in starch accumulation in banana fruit.
DOI: 10.6084/m9.figshare.18131247.v1
title: A- and B-subgenome characterisation of sucrose synthase family proteins and functional identification of <i>MaSUS2.2</i> reveals its involvement in the starch accumulation in banana fruit

description: Sucrose synthase (SUS) is one of the most important enzymes catalysing the synthesis and cleavage of sucrose, and it also plays a crucial role in multiple plant biological processes. However, SUS has been scarcely reported in banana which accumulates large amounts of starch in its fruit. In this genome-wide study on banana, nine <i>SUS</i> genes were identified in each of the two subgenomes (A and B) for the first time, which were clustered into three distinct groups. Those in the group II underwent further duplications. In the transcriptome analysis of Baxijiao (BX, AAA) and Fenjiao (FJ, ABB) banana, four <i>MaSUS</i>s (<i>MaSUS-2.1</i>, <i>-2.2</i>, <i>-2.3</i>, and -<i>3.2</i>) and five <i>MbSUS</i>s (<i>MbSUS-2.1</i>, <i>-2.2</i>, <i>-2.3</i>, <i>-2.4</i>, and <i>-3.2</i>) were expressed during fruit development, with <i>MaSUS2.2</i>/<i>MbSUS2.2</i> being the most highly expressed. Transient overexpression of <i>MaSUS2.2</i> resulted in a significant increase in its transcription, which was consistent with significantly enhanced starch content in banana fruits. Its function was further identified by its transient silencing expression in banana fruit discs, which led to a significant reduction in total starch content. Taken together, the results show that multiple <i>SUS</i> genes, especially <i>SUS2.2</i>, play an important role in starch accumulation in banana fruit.
DOI: 10.6084/m9.figshare.11315504
title: MOESM2 of Prevalence of fluoroquinolone resistance and mutations in the gyrA, parC and parE genes of Riemerella anatipestifer isolated from ducks in China

description: Additional file 2: Table S2. Origin and accession numbers of 37 whole-genome sequences of R. anatipestifer
DOI: 10.6084/m9.figshare.11315504.v1
title: MOESM2 of Prevalence of fluoroquinolone resistance and mutations in the gyrA, parC and parE genes of Riemerella anatipestifer isolated from ducks in China

description: Additional file 2: Table S2. Origin and accession numbers of 37 whole-genome sequences of R. anatipestifer
DOI: 10.6084/m9.figshare.11315513
title: MOESM3 of Prevalence of fluoroquinolone resistance and mutations in the gyrA, parC and parE genes of Riemerella anatipestifer isolated from ducks in China

description: Additional file 3: Table S3. Amino acid sequence alignment of GyrA from the 37 whole-genome-sequenced R. anatipestifer strains