cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2785zxsyzd
title: DCAF14 promotes stalled fork stability to maintain genome integrity.
DOI: 10.6084/m9.figshare.8986400.v1
title: pat 6 MRI

description: Admire, Pinnacle, and Velocity denote structure sets after a deformable or rigid registration was applied to the MRI holding the CT as primary.
DOI: 10.17615/k2em-2r47
title: AUW Strong Schools 2024/2025: De-Identified Transcripts of Student Videos on Flip.com

description: <p>The videos transcribed in this dataset were originally posted on flip.com on three different flip boards with students sharing their experiences with (1) writing the open access e-book 'AI in Education', (2) using generative AI and (3) general course feedback for the 2024/2025 course "Educational Technology for Strong Schools" at the Asian University for Women. The videos were initially incoporated into the e-book, but are no longer accessible since flip.com discontinued its service. The student e-book is accessible online: https://edtechbooks.org/ai_in_education</p>
DOI: 10.6084/m9.figshare.24197271.v4
title: Replication of dynamic equations and eigenvalue computation procedures

description: The global cold chain logistics market is witnessing a significant upswing, driven by the rising demand for perishable food products and increasing shipment volumes worldwide. Technological advancements are leading to a more intelligent and digitally enabled cold chain logistics system. However, the high loss rate of fresh agricultural products in China poses a significant threat to the country's food security. Therefore, it is imperative to explore innovative solutions, such as blockchain, to address the challenges of traditional cold chain logistics. In this paper, inspired by the prospect theory and evolutionary game theory, we propose an evolutionary game model to analyze the behavioral strategies of the tripartite of n-level cold chain participants, consumers, and government. Using MATLAB software, the numerical simulation of the game path of this tripartite theory is conducted, and the influence of variable parameters on the evolutionary process and outcomes of the system is analyzed. The results the following: (1) The development of an effective cold chain supply chain system can be divided into three stages, and blockchain technology plays a pivotal role in creating a seamless cold chain environment. The cost of blockchain adoption, government rewards, as well as penalties can significantly influence the behavioral choices of the three stakeholders. (2) The behavior of individual cold chain participants has a strong negative externality, which can impact the behavior of others. We also find that the larger the scale of the cold chain, the lower the probability of default by the participants. (3) The government's adoption of blockchain technology and the implementation of effective incentive policies can foster the successful development of the cold chain blockchain infrastructure. Our research contributes to the theoretical understanding of cold chain logistics decision making and policy creation for the tripartite stakeholders, including cold chain participants, consumers, and government. Our findings can serve as a valuable reference for scientific decision making and policy formulation to encourage the development of a robust cold chain supply chain system.
DOI: 10.6084/m9.figshare.27999701.v1
title: Supplementary Material for: A meta-analysis assessing the therapeutic efficacy and safety of anlotinib in combination with chemotherapy for small cell lung cancer

description: Introduction: This meta-analysis aimed to assess the effectiveness and safety of combining anlotinib with chemotherapy in treating patients with small cell lung cancer (SCLC).
Methods: We systematically searched a range of databases, including PubMed, Embase, Cochrane Library, and Web of Science, up to July 28, 2023, complemented by searches in Chinese databases such as CNKI, Wanfang, and VIP, through July 4, 2023. The outcomes analyzed were objective response rate (ORR), disease control rate (DCR), progression-free survival (PFS), median PFS (mPFS), overall survival (OS), vascular endothelial growth factor (VEGF) levels, and the adverse events. 
Results: The analysis, which integrated data from 16 studies encompassing 1,083 patients, demonstrated that the combined treatment of anlotinib and chemotherapy significantly outperformed either anlotinib or chemotherapy alone in enhancing the ORR, DCR, and mPFS. Furthermore, this combination therapy also resulted in improved PFS, 1-year and 2-year overall OS, and reduced levels of VEGF) compared to chemotherapy alone, with all comparisons reaching statistical significance (P &lt; 0.05). The combination of anlotinib with chemotherapy exhibited a considerably elevated risk of developing leukopenia (RR: 1.41, 95% CI: 1.09 to 1.82, P =0.008). The subgroup analyses indicated the anlotinib plus etoposide group and anlotinib plus irinotecan were superior to the etoposide and the irinotecan groups, respectively, in terms of ORR outcome and DCR outcome. The subgroup analysis revealed that the combination of anlotinib and etoposide significantly increased the risk of thrombocytopenia and myelosuppression compared to etoposide alone. In patients with a history of one or an unspecified number of chemotherapy cycles, the integration of anlotinib into the chemotherapy regimen improved DCR. Conversely, in those who had undergone more than two prior treatment cycles, the risk of myelosuppression was heightened with the addition of anlotinib. Lastly, the risk of gastrointestinal adverse events was increased in patients receiving more than two treatment cycles of anlotinib plus chemotherapy compared to anlotinib monotherapy.
Conclusion: The findings of this investigation imply that the integration of anlotinib into chemotherapy regimens may enhance PFS, ORR, DCR, and OS in SCLC patients. This meta-analysis presents novel therapeutic prospects for SCLC, suggesting that the synergistic approach of anlotinib and chemotherapy could markedly enhance treatment outcomes for this patient population.
DOI: 10.6084/m9.figshare.7967300.v1
title: Clocklike genes in Komodo dragon dataset

description: Individual gene trees for 1,394 single copy orthologs across 15 reptile species, three birds, and four mammals were used to estimate a species phylogeny. The 15 reptile species used were Varanus komodoensis, Shinisaurus crocodilurus, Ophisaurus gracilis, Anolis carolinensis, Pogona vitticeps, Python molurus bivittatus, Eublepharis macularius, Gekko japonicus, Pelodiscus sinensis, Chelonia mydas, Chrysemys picta bellii, Alligator sinensis, Alligator mississippiensis, Gavialis gangeticus, and Crocodylus porosus. The three birds used were Gallus gallus, Meleagris gallopavo, and Taeniopygia guttata, and the four mammals were Ornithorhynchus anatinus, Mus musculus, Canis familiaris, and Homo sapiens. Each set of orthologous proteins were aligned using PRANK v.170427. Gene trees were constructed using IQ-TREE and rooted on mammals as an outgroup.<br>Informative metrics for finding clock-like genes was performed with SortaDate (https://github.com/FePhyFoFum/SortaDate). These metrics are root-to-tip variance, tree length, and bipartition support compared to the reference concatenation phylogeny. This can be used to identify genes evolving in a clock-like manner for phylogenetic analyses.
DOI: 10.6084/m9.figshare.22689751.v16
title: Mapping annual 10-m maize cropland changes in China during 2017-202

description: Mapping annual 10-m maize cropland changes in China during 2017-2021 <strong>The format of data is: [adcode]_[year].tif</strong> <strong>the [adcode] is a unique code for province of China. (</strong> More detail: DataV.GeoAtlas地理小工具系列 (aliyun.com) <strong>)</strong>
DOI: 10.6084/m9.figshare.28852013.v1
title: BigWig Files

description: RNA immunoprecipitation-sequencing (RIP-Seq) data on Tet1 KO CPUs
DOI: 10.17632/6xp5yb72cd
title: Complete genome sequence of Bacillus velezensis RB.IBE29, the chitinolytic bacterium isolated from the rhizospheric soil of black pepper

description: This work reports the complete genome sequence of chitinolytic Bacillus velezensis RB.IBE29 recently isolated from the rhizosphere of black pepper cultivated in the Central Highlands region of Vietnam.
DOI: 10.6084/m9.figshare.1120502.v1
title: Comparing the effects of nocturnal sleep and daytime napping on declarative memory consolidation

description: Experiment 2: daytime nap
DOI: 10.6084/m9.figshare.19160915.v2
title: EMG of healthy subjects

description: The data file includes the raw EMG signals of 20 healthy subjects when performing hand-to-nose movement. Ten muscle activities are measured, triceps brachii long and lateral head (TLO and TLA), latissimus dorsi (LAT), pectoralis major (PEC), deltoid anterior, medial, and posterior (DEA, DEM, and DEP), trapezius upper (TRA), biceps brachii (BIC), and brachioradialis (BRA). And each subject continuously repeated the movement three times.
DOI: 10.6084/m9.figshare.28172021.v1
title: AR data.xlsx

description: This research adopts measurement scales from virtual reality studies. The survey is divided into three parts. The first part collects demographic data, such as age, gender, and experience with virtual platforms. The second part contains a video demonstrating the process of using augmented reality to experience furniture in the Houzz app. The third part covers questions related to the six variables in this study, using a 7-point Likert scale where 1 = Strongly Disagree, 2 = Disagree, 3 = Slightly Disagree, 4 = Neutral, 5 = Slightly Agree, 6 = Agree, and 7 = Strongly Agree. The latent variables in the conceptual framework include Interactive Interface (NI), Furniture Feature (FF), Furniture Display (FD), Perceived Usefulness (PU), Perceived Ease of Use (PEOU), and Purchase Intention (PI). A total of 515 valid questionnaires were collected in China, and the data analysis was carried out using SPSS and SMART PLS 3.3.3 software.
DOI: 10.6084/m9.figshare.7969700.v1
title: Revisiting the Relationship between WIC Participation and Breastfeeding: An Instrumental Variable Approach

description: Our primary data source is the National Immunization Surveys (NIS). NIS is a national annual cross-sectional population-based survey sponsored and conducted by the National Center for Immunization and Respiratory Diseases (NCIRD) of the Centers for Disease Control and Prevention (CDC). It is an annual, telephone-based survey by interviewing with parents or guardians in all 50 states, the District of Columbia, and some U.S. territories to monitor vaccination coverage among children 19–35 months and teens 13–17 years. The NIS provides nationally, state, and locally representative estimate of vaccination coverage among children and teenagers. We used only the NIS-child data in this study, which contains information on sociodemographic and health insurance information for 19 - 35 months children as well as their mothers’ WIC participation status. NIS-child also reports the child’s breastfeeding information. NIS-child is the data used by CDC to produce the annual national Breastfeeding Report Card, which includes the national- and state-level breastfeeding rates. Aiming to be comparable and consistent with the results of the CDC Breastfeeding Report Card, we included the data from 50 states and D.C. and combined two survey years data as one cohort by the year of child-birth following the methods used in the CDC NIS data analysis guide. Data for this study were derived from the 2006-2016 NIS-child public use data, which does not provide the survey child’s birth month and year information but includes the child’s age group information (age groups: 19-23 months, 24-29 months, and 30-35 months respectively). We used the child’s age group information to infer their birth year. For example, children aged 19-23 months in the 2015 NIS-child survey year represent the child from January 2014 to May 2014. Similarly, children aged 24 months or older in the 2016 NIS-child survey data can also be born in 2014. Therefore, we combined these children from the 2015 and 2016 NIS-child survey data to create a 2014 NIS-child birth cohort. In this study, we created the birth cohorts of 2005 to 2014 by using the 2006-2016 NIS-child survey data. To ensure that these birth cohorts consistent with the cohorts in the CDC’s breastfeeding report card, we replicated the ever-breastfeeding rates, which were essentially the same as in the published report.
DOI: 10.6084/m9.figshare.1515919.v1
title: Word frequencies from Project Gutenberg English texts

description: A compressed folder containing 31075 numerical vectors. Each one represents word frequencies of an EBook from Project Gutenberg written in English. Vectors are named containing the ID number of their corresponding text in Project Gutenberg.
DOI: 10.6084/m9.figshare.24434449.v1
title: Supplementary Material for: Gut microbe-metabolite profiles are associated with microbial pathways of longevity in women: a cross-sectional study conducted in China

description: Introduction: Recent research on the gut deepens people’s understanding of the role of gut microbe-metabolites in longevity. However, most of the longevity population is female, and the gut microbe-metabolites associated with longevity in women remain unknown. Here, we hypothesize that the gut microbe-metabolite levels differed between the longevity women (LW, age ≥ 90) and the elderly women (EW, 60 &lt; age &lt; 90). Methods: We performed a cross-sectional study of 22 women in Guangxi longevity areas. 16S rRNA full-length sequencing, bioinformatic analysis, and nuclear magnetic resonance hydrogen spectra (1H-NMR) were determined to analyze the gut microbiota, microbial pathways, and fecal metabolites. We evaluated significant differences and relationships in gut microbe-metabolites and microbial pathways using the Mann-Whitney test and Spearman correlation, respectively. Results: The EW experienced gut dysbiosis characterized by a higher Firmicutes/Bacteroidetes (F/B) value. The LW showed a higher abundance of Bacteroides and Alistipes, which might support health maintenance. Moreover, LW enriched alanine, aspartate, and glutamate metabolism, histidine metabolism, and pyruvate metabolism, leading to major changes in histidine, fumaric acid, acetate, valine, and aspartate. Interestingly, the most valuable metabolic pathway based on differential fecal metabolites confirmed the KEGG microbial pathway ‘alanine, aspartate, and glutamate metabolism’ enriched in LW. Impressively, Bacteroides and Alistipes were positively correlated with alanine, aspartate and glutamate metabolism, thus improving the level of aspartate, which could be a particular pathway related to longevity. Conclusion: The enriched gut genus and microbial pathways in LW showed a significant correlation, which might mediate the production of metabolites related to longevity.
DOI: 10.17632/52rwzg92f6
title: BDI and Commodity returns dataset

description: The dataset contains returns data for Baltic Dry Index and commodity spot prices
DOI: 10.17632/9b4whhdrdn
title: Ovarian Cancer with Skin Involvement Supplementary Material

description: Supplemental Material. Supplementary Figure 1 and Supplementary Table 1.
DOI: 10.6084/m9.figshare.11813439.v1
title: Diabetes_Project_Dataset.xlsx

description: Dataset from retrospective review of patients with diabetes in a short-term medical mission clinic. Please note confidential personal health information such as date of birth, date of death, and exact age over 89 years have been removed.
DOI: 10.6084/m9.figshare.19499225.v1
title: patches and local annotations, slide 123, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.17632/2hphg6tcgc
title: Predictors of Severity in Paradoxical Psoriasis from Biologic Therapies: A Systematic Review

description: Supplementary material 
Figure 1 - PRISMA flow diagram 
Table 1 - Multivariable meta-regression of paradoxical reactions for predictors of severity
DOI: 10.6084/m9.figshare.7321268.v4
title: Data for the manuscript "Additive effects of the connectivity provided by different habitat types drive plant assembly"

description: Data for the manuscript "Additive effects of the connectivity provided by different habitat types drive plant assembly"<br><b>Data_PAMatrix.xlsx.</b> Species presence-absence matrix for the 25 patches of i) woodlands, ii) grasslands and iii) croplands for effect size (ES) similarity value assessment <br><br><b>Script_ESValues_.R</b> Script for effect size (ES) of similarity values assessment<br><br><b>Data_DistR.xlsx.</b> Resistance distance of woodlands (DistR woodlands), grasslands (DistR grasslands) and croplands (DistR crops) for the 25 patches of woodlands, grasslands and croplands. <br><br><b>Data_EllenbergSimilarity.xlsx.</b> Data to assess the similarity of Ellenberg edaphic indicator values (SE) between each pair of assemblages (moisture, nutrient availability and pH) for the 25 patches of woodlands, grasslands and croplands. <br>-&gt; This excel file has 2 sheets (both species presence-absence matrix and Ellenberg indicator values for each species]) for the 25 patches of woodlands, grasslands and croplands (total: 6 sheets)<br><b>Script_SEllenberg.R. </b>Script to calculate the similarity of Ellenberg edaphic indicator values (SE) between each pair of assemblages (moisture, nutrient availability and pH) <br><b>Data_ForLMM.xlsx.</b> Data to perform Linear Mixed Models to test the effect of i) resistance distance (DistR) with or without ii) the similarity of Ellenberg edaphic indicator values between pairs of patches on the effect size (ES) of similarity value for each habitat type and for each dispersal mode.<br><b>Script_LMM.R.</b> Script to perform Linear Mixed Models
DOI: 10.6084/m9.figshare.26603911.v1
title: Suppl Table 2 Multiplex pg_ml.xlsx

description: The interplay between genetic and environmental factors during pregnancy can predispose to inflammatory diseases postnatally, including eosinophilic esophagitis, a chronic allergic disease triggered by food. Herein, we examined the effects of amniotic fluid (AF) on esophageal epithelial differentiation and responsiveness to pro-allergic stimuli. Multiplex analysis of AF revealed the expression of 66 cytokines, whereas 5 cytokines including IL-4 and TSLP were not detected. Several pro-inflammatory cytokines including TNFa and IL-12 were highly expressed in the AF from women who underwent preterm birth, while EGF was the highest in term birth samples. Exposure of esophageal epithelial cells to AF resulted in transient phosphorylation of ERK1/2 and the transcription of early response genes, highlighting the direct impact of AF on esophageal epithelial cells. In a 3-dimensional spheroid model, AF modified the esophageal epithelial differentiation program and enhanced the transcription of IL-13-target genes, including <i>CCL26</i> and <i>CAPN14, </i>which encodes for a major genetic susceptibility locus for eosinophilic esophagitis. Notably,<i> CAPN14</i> exhibited upregulation in spheroids exposed to preterm but not term AF following differentiation. Collectively, our findings call attention to the role of AF as a potential mediator of the intrauterine environment that influences subsequent esophageal disorders.
DOI: 10.6084/m9.figshare.27074575.v1
title: Data collected every 5min by the DST logger.

description: This dataset was used to publish the article "Sub-fat temperature variations and heart-rate adjustments in the southern elephant seal <i>Mirounga leonina</i> as a function of dive duration, depth, and water temperature".<br>This dataset contains 7 subsets : one for each individual and one for all.<br>Each individual subset contains 9 variables :Date_Time : date and time of recording,Tsc : sub-fat/subcutaneous temperature (°C),HR : heart rate (bpm),Sites : can take 3 different values depending on the date (when individuals are on land before departure, when they are at sea and when individuals are on land after arrival),Environment : details of the environment in which the individual is located (on land or at sea),diff_SolarNoon : time (hour), considering the difference with solar noon on some dates,diff_SolarNoon_interpol : interpolation of diff_SolarNoon from first to last value of diff_SolarNoon,diff_SolarNoon_interpol_AllJourney : interpolation of diff_SolarNoon_interpol when individuals are on land.Day.Night : corresponds to the time of the day (day or night).<br>
DOI: 10.6084/m9.figshare.7550981.v1
title: ManuscriptSDQ12.sav

description: sdq12 questionnaire raw data<br>
DOI: 10.6084/m9.figshare.12526535.v1
title: Supplementary Material for: Impact of Kidney Disease on Peripheral Arterial Interventions: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> There are limited data on outcomes of patients undergoing peripheral arterial disease (PAD) interventions who have comorbid CKD/ESRD versus those who do not have such comorbid condition. We performed a systematic review and meta-analysis to analyze outcomes in this patient population. <b><i>Methods:</i></b> Five databases were searched for studies comparing outcomes of lower extremity PAD interventions for claudication and critical limb ischemia (CLI) in patients with CKD/ESRD versus non-CKD/non-ESRD from January 2000 to June 2019. <b><i>Results:</i></b> Our study included 16 observational studies with 44,138 patients. Mean follow-up was 48.9 ± 27.4 months. Major amputation was higher with CKD/ESRD compared with non-CKD/non-ESRD (odds ratio [OR 1.97] [95% confidence interval [CI] 1.39–2.80], <i>p</i> = 0.001). Higher major amputations with CKD/ESRD versus non-CKD/non-ESRD were only observed when indication for procedure was CLI (OR 2.27 [95% CI 1.53–3.36], <i>p</i> &lt; 0.0001) but were similar for claudication (OR 1.15 [95% CI 0.53–2.49], <i>p</i> = 0.72). The risk of early mortality was high with CKD/ESRD patients undergoing PAD interventions compared with non-CKD/non-ESRD (OR 2.55 [95% CI 1.65–3.96], <i>p</i> &lt; 0.0001), which when stratified based on indication, remained higher with CLI (OR 3.14 [95% CI 1.80–5.48], <i>p</i> &lt; 0.0001) but was similar with claudication (OR 1.83 [95% CI 0.90–3.72], <i>p</i> = 0.1). Funnel plot of included studies showed moderate bias. <b><i>Conclusions:</i></b> Patients undergoing lower extremity PAD interventions for CLI who also have comorbid CKD/ESRD have an increased risk of experiencing major amputations and early mortality. Randomized trials to understand outcomes of PAD interventions in this at-risk population are essential.