cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1399068.10fu
title: SH1399068.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1399071.10fu
title: SH1399071.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1399084.10fu
title: SH1399084.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1399085.10fu
title: SH1399085.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1399089.10fu
title: SH1399089.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.rsnq3q
title: Occurrence Download

description: A dataset containing 206691 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Triturus cristatus"
 ]
}

 The dataset includes 206691 records from 882 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024313-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17360612
title: Agilent custom microarray data for Cyprinus carpio (common carp)

description: Agilent custom microarray data for common carp (Cyprinus carpio)================================================================

Dataset purpose---------------This dataset accompanies the manuscript *"Transcriptional profiling of common carp: a microarray-based framework for aquaculture research"* (Int. J. Mol. Sci., MDPI; in preparation).It provides raw Feature Extraction outputs, processed expression matrices, and platform annotation for a custom Agilent 8×60K array designed against the SPL01 reference genome.

Contents--------- **Agilent custom microarray data for GEO_carp/** (zip root)  - **Raw data files/** — Agilent Feature Extraction `.txt` files (two-color protocol GE2_1200_Jun14).  - **Processed data file/** — normalized expression matrix for the healthy control set.  - **Metadata spreadsheet/** — sample/experiment metadata aligned with MIAME (GEO/ArrayExpress-compatible).  - **GEO_Agilent_custom_microarrray.xlsx** — platform and sample annotations (ProbeID/TargetID/GeneSymbol; study metadata).

Recommended citation--------------------If you reuse the data, please cite:Pluta A., Paździor E., Fletcher D., Karwatowicz M. (2025). Agilent custom microarray data for *Cyprinus carpio* (common carp). Zenodo. https://doi.org/DOI_TBD

Versioning----------Zenodo assigns a DOI to the dataset and a concept DOI for all versions. Please cite the specific version you used.

Provenance & methods (short)----------------------------- Species: *Cyprinus carpio* (common carp); tissue: head kidney (pronephros), healthy controls.- RNA integrity: RIN ≥ 9.0; two independent RNA isolations pooled as A/B.- Labeling: Agilent Low Input Quick Amp, two-color workflow; spike-in A→Cy3, B→Cy5.- Hybridization: 65 °C, 17 h (8×60K), Gene Expression Wash Buffer kit.- Scanning: Agilent G2505C at 3 µm; Feature Extraction v12.0.3.1 (GE2_1200_Jun14).- Processing: FE background-corrected `gProcessedSignal`/`rProcessedSignal`; log2 transform; baseline-to-median centering; FE flags used to filter; technical replicates summarized to probe level.

File integrity--------------A machine-readable checksum manifest (SHA256) is provided as `CHECKSUMS_SHA256.txt` for all files within the supplied zip archive.

Licensing---------**CC BY 4.0**. You are free to share and adapt the material with attribution to the authors and the National Veterinary Research Institute (NVRI).

Contact-------Corresponding: Aneta Pluta — aneta.pluta@piwet.pulawy.plSecondary: Ewa Paździor — ewa.pazdzior@piwet.pulawy.pl
DOI: 10.5281/zenodo.17360611
title: Agilent custom microarray data for Cyprinus carpio (common carp)

description: Agilent custom microarray data for common carp (Cyprinus carpio)================================================================

Dataset purpose---------------This dataset accompanies the manuscript *"Transcriptional profiling of common carp: a microarray-based framework for aquaculture research"* (Int. J. Mol. Sci., MDPI; in preparation).It provides raw Feature Extraction outputs, processed expression matrices, and platform annotation for a custom Agilent 8×60K array designed against the SPL01 reference genome.

Contents--------- **Agilent custom microarray data for GEO_carp/** (zip root)  - **Raw data files/** — Agilent Feature Extraction `.txt` files (two-color protocol GE2_1200_Jun14).  - **Processed data file/** — normalized expression matrix for the healthy control set.  - **Metadata spreadsheet/** — sample/experiment metadata aligned with MIAME (GEO/ArrayExpress-compatible).  - **GEO_Agilent_custom_microarrray.xlsx** — platform and sample annotations (ProbeID/TargetID/GeneSymbol; study metadata).

Recommended citation--------------------If you reuse the data, please cite:Pluta A., Paździor E., Fletcher D., Karwatowicz M. (2025). Agilent custom microarray data for *Cyprinus carpio* (common carp). Zenodo. https://doi.org/DOI_TBD

Versioning----------Zenodo assigns a DOI to the dataset and a concept DOI for all versions. Please cite the specific version you used.

Provenance & methods (short)----------------------------- Species: *Cyprinus carpio* (common carp); tissue: head kidney (pronephros), healthy controls.- RNA integrity: RIN ≥ 9.0; two independent RNA isolations pooled as A/B.- Labeling: Agilent Low Input Quick Amp, two-color workflow; spike-in A→Cy3, B→Cy5.- Hybridization: 65 °C, 17 h (8×60K), Gene Expression Wash Buffer kit.- Scanning: Agilent G2505C at 3 µm; Feature Extraction v12.0.3.1 (GE2_1200_Jun14).- Processing: FE background-corrected `gProcessedSignal`/`rProcessedSignal`; log2 transform; baseline-to-median centering; FE flags used to filter; technical replicates summarized to probe level.

File integrity--------------A machine-readable checksum manifest (SHA256) is provided as `CHECKSUMS_SHA256.txt` for all files within the supplied zip archive.

Licensing---------**CC BY 4.0**. You are free to share and adapt the material with attribution to the authors and the National Veterinary Research Institute (NVRI).

Contact-------Corresponding: Aneta Pluta — aneta.pluta@piwet.pulawy.plSecondary: Ewa Paździor — ewa.pazdzior@piwet.pulawy.pl
DOI: 10.5517/cc8v4x4
title: CCDC 263466: Experimental Crystal Structure Determination

description: Related Article: He-Dong Bian, Wen Gu, Qing Yu, Shi-Ping Yan, Dai-Zheng Liao, Zong-Hui Jiang, Peng Cheng|2005|Polyhedron|24|2002|doi:10.1016/j.poly.2005.06.011
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8qng2
title: CCDC 260104: Experimental Crystal Structure Determination

description: Related Article: U.Rychlewska, D.M.Guresic, B.Warzajtis, D.D.Radanovic, M.I.Djuran|2005|Polyhedron|24|2009|doi:10.1016/j.poly.2005.06.010
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8v4y5
title: CCDC 263467: Experimental Crystal Structure Determination

description: Related Article: He-Dong Bian, Wen Gu, Qing Yu, Shi-Ping Yan, Dai-Zheng Liao, Zong-Hui Jiang, Peng Cheng|2005|Polyhedron|24|2002|doi:10.1016/j.poly.2005.06.011
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8qnh3
title: CCDC 260105: Experimental Crystal Structure Determination

description: Related Article: U.Rychlewska, D.M.Guresic, B.Warzajtis, D.D.Radanovic, M.I.Djuran|2005|Polyhedron|24|2009|doi:10.1016/j.poly.2005.06.010
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8qnj4
title: CCDC 260106: Experimental Crystal Structure Determination

description: Related Article: U.Rychlewska, D.M.Guresic, B.Warzajtis, D.D.Radanovic, M.I.Djuran|2005|Polyhedron|24|2009|doi:10.1016/j.poly.2005.06.010
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc91nnm
title: CCDC 269720: Experimental Crystal Structure Determination

description: Related Article: C.J.Davies, S.J.Hilton, G.A.Solan, W.Stannard, J.Fawcett|2005|Polyhedron|24|2017|doi:10.1016/j.poly.2005.06.005
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.vdptzj
title: Occurrence Download

description: A dataset containing 2548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Selaginella moellendorffii Hieron.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2548 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068479-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udgzru
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Ovalipes stephensoni)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148311-230224095556074/datasets/export for details.
DOI: 10.15468/dl.sgqurt
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (South America, North America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Imantodes lentiferus (Cope, 1894)"
 ]
}

 The dataset includes 153 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014911-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rbnbd
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pterostylis aphylla Lindl."
 ]
}

 The dataset includes 173 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097649-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frt8fk
title: Occurrence Download

description: A dataset containing 13266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mollusca",
 "DatasetKey is SEWBReC Molluscs (South East Wales)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 13266 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0215260-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzkbg3
title: Occurrence Download

description: A dataset containing 140638 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia L."
 ]
}

 The dataset includes 140638 records from 980 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014923-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76t2vw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Costus adolphi-friderici Loes."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148332-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jctsxc
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pterostylis aquilonia D.L.Jones & B.Gray"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097651-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqjk92
title: Occurrence Download

description: A dataset containing 2563 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oreonympha nobilis Gould, 1869"
 ]
}

 The dataset includes 2563 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061497-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umdwdw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Dipturus laevis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148312-230224095556074/datasets/export for details.
DOI: 10.15468/dl.6tzcv4
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mollusca",
 "DatasetKey is Biodiversitätsdatenbank Nationalpark Hohe Tauern",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 114 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0215273-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xkzjh
title: Occurrence Download

description: A dataset containing 1656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mollusca",
 "DatasetKey is Midden-Limburg Fish Ponds Survey",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 1656 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0215266-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n593e4
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetraria raynaliana Larridon"
 ]
}

 The dataset includes 117 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148313-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hajfp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Culicidae",
 "Country is Antarctica"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027556-230530130749713/datasets/export for details.
DOI: 10.15468/dl.mw2gt5
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mollusca",
 "DatasetKey is Dalbekschlucht",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0215268-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3ncg5
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Costularia purpurea Cherm."
 ]
}

 The dataset includes 99 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148314-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxmyd5
title: Occurrence Download

description: A dataset containing 5720 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parthenium integrifolium L."
 ]
}

 The dataset includes 5720 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061483-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.