cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.njbbzr
title: Occurrence Download

description: A dataset containing 61298 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Données d'occurrences issues des Formulaires standards de données des sites Natura 2000 - Données d'occurrence Espèces issues de la base Natura 2000 : espèces d'intérêt communautaire et autres espèces remarquables renseignées dans les FSD"
 ]
}

 The dataset includes 61298 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284887-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pj99fy
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "OccurrenceStatus is Present",
 "TaxonKey is Trypoxylus dichotomus septentrionalis Kôno, 1931",
 "Year 2000-2022"
 ]
}

 The dataset includes 158 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176390-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8q8vhu
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((115.98704 -31.92085,115.99726 -31.92085,115.99726 -31.91353,115.98704 -31.91353,115.98704 -31.92085))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)"
 ]
}

 The dataset includes 137 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284886-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufwtm9
title: Occurrence Download

description: A dataset containing 426 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is Poanes zabulon (Boisduval & Le Conte, 1837)"
 ]
}

 The dataset includes 426 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176123-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxumk2
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helichrysum milne-redheadii Brenan"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239080-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nsc8b
title: Occurrence Download

description: A dataset containing 11766837 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Ecuador"
 ]
}

 The dataset includes 11766837 records from 2061 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006790-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3dgaqu
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ixodes pavlovskyi Pomerantsev, 1946"
 ]
}

 The dataset includes 92 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013100-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14015362
title: Simulation Code for Plotting the Range-Doppler Map

description: This file contains simulation code for plotting a Range-Doppler map. Key parameters have been left blank and should be populated with your specific data before running the code. Ensure all required fields are correctly set to generate accurate simulation results.
DOI: 10.5281/zenodo.14015363
title: Simulation Code for Plotting the Range-Doppler Map

description: This file contains simulation code for plotting a Range-Doppler map. Key parameters have been left blank and should be populated with your specific data before running the code. Ensure all required fields are correctly set to generate accurate simulation results.
DOI: 10.15468/dl.jtqpm8
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Coleção Ictiológica (MNRJ), Museu Nacional (MN), Universidade Federal do Rio de Janeiro(UFRJ)",
 "TaxonKey is Triglidae"
 ]
}

 The dataset includes 72 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013101-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5440/1374172
title: Electrical and Seismic Response of Saline Permafrost Soil during Freeze - Thaw Transition: Supporting Data

description: These data were collected during a repeat freeze-thaw cycle on a saline permafrost portion of a core to understand mechanical and geophysical property changes over time. The core used for the experiment was collected from the NGEE-Arctic Site 0 transect site located in the Barrow Environmental Observatory (BEO) in Barrow, Alaska. This region features polygonal ground, and the core was collected in the center of a flat centered polygon. The saline permafrost portion of the core was at the bottom 260-280 cm below ground surface. Data files (*.csv) include: Electrical signal change during freeze-thaw-refreeze cycle at 1 Hz; Spectral data - Complex resistivity data during Freeze-thaw of the saline permafrost core; Seismic data; and CT cross sections (*.jpg) of the core sample from approximately the same location: (A, D) before the test (thawed), (B, E) after the test (frozen), and (C, F) after deep freeze (frozen).The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.5440/1544779
title: Thaw Depth, Oxyanion Concentrations, and Soil Moisture from Elevated Microtopographic Polygonal Features, Utqiagvik (Barrow), Alaska, 2016 and 2017

description: Data include results from elevated macrotopographic features soil pore-water oxyanion concentrations, soil moisture, and for samples collected from the Barrow Environmental Observatory and the broader Barrow Peninsula near Utqiagvik, Alaska during September 2016 and July 2017. Samples were collected from the top 20 cm of elevated polygonal tundra microtopograpic features including high-centered polygon centers, flat-centered polygon centers, low-centered polygon rims, the outer edges of drain-thaw lake basins (DTLB), and high centered polygons that underwent accelerated drying due to anthropogenic disturbance (ACC-HCP). This dataset contains two *.csv data files and one *.pdf user guide and is used in Arendt, et.al.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.6084/m9.figshare.27366252
title: litter micro-food web

description: The subtropical forest ecosystem carbon and nutrient cycling are highly susceptible to increasing atmospheric nitrogen (N) deposition. The leaf litter micro-food webs are both facilitators and regulators of decomposition. However, responses of leaf litter micro-food webs to N deposition remain unclear, especially at humus-near stage of leaf litter decomposition. In this study, the leaf litter decomposition was subjected to experimental N addition (+100 kg N ha<sup>-1</sup> y<sup>-1</sup>), and the leaf litter biota communities (microbes and nematodes) and the subsequent leaf litter micro-food web were evaluated in a subtropical plantation.
DOI: 10.6084/m9.figshare.27366252.v2
title: litter micro-food web

description: The subtropical forest ecosystem carbon and nutrient cycling are highly susceptible to increasing atmospheric nitrogen (N) deposition. The leaf litter micro-food webs are both facilitators and regulators of decomposition. However, responses of leaf litter micro-food webs to N deposition remain unclear, especially at humus-near stage of leaf litter decomposition. In this study, the leaf litter decomposition was subjected to experimental N addition (+100 kg N ha<sup>-1</sup> y<sup>-1</sup>), and the leaf litter biota communities (microbes and nematodes) and the subsequent leaf litter micro-food web were evaluated in a subtropical plantation.
DOI: 10.6084/m9.figshare.27366252.v1
title: litter micro-food web

description: The subtropical forest ecosystem carbon and nutrient cycling are highly susceptible to increasing atmospheric nitrogen (N) deposition. The leaf litter micro-food webs are both facilitators and regulators of decomposition. However, responses of leaf litter micro-food webs to N deposition remain unclear, especially at humus-near stage of leaf litter decomposition. In this study, the leaf litter decomposition was subjected to experimental N addition (+100 kg N ha<sup>-1</sup> y<sup>-1</sup>), and the leaf litter biota communities (microbes and nematodes) and the subsequent leaf litter micro-food web were evaluated in a subtropical plantation.
DOI: 10.21947/2386868
title: Buoy - WFIP3 - Wind Sentinel (140) / Raw Data

description: These data were collected during the WFIP3 project period, initially deployed near the Martha's Vineyard region for validation and later deployed at the WFIP3 location.
DOI: 10.5281/zenodo.14014674
title: Molecular Dynamics Trajectories of Membrane-bound Influenza Hemagglutinin (A/duck/Alberta/35/76) in Complex with 0-3 Copies of FISW84 Fab Fragments

description: MD simulation trajectories of influenza hemagglutinin (A/duck/Alberta/35/76) in a bilayer mimicking the viral membrane, with 0-3 copies of FISW84 antibody's Fab domains bound.

Files are named as (copy number of Fab).(simulation replica ID).(file type extension). The systems were constructed in CHARMM format PSF files and the trajectories were recorded in DCD format.

Simulations were performed with NAMD3. The trajectories were re-centered and re-wrapped about the periodic boundary from the raw trajectories, in order to keep the HA-Fab complex and the lipid bilayer appearing as a single continuous entity instead of isolated molecules at the opposite side of the periodic boundary. Water molecules in the simulation were removed in these trajectories due to file size limitations.
DOI: 10.5281/zenodo.14014675
title: Molecular Dynamics Trajectories of Membrane-bound Influenza Hemagglutinin (A/duck/Alberta/35/76) in Complex with 0-3 Copies of FISW84 Fab Fragments

description: MD simulation trajectories of influenza hemagglutinin (A/duck/Alberta/35/76) in a bilayer mimicking the viral membrane, with 0-3 copies of FISW84 antibody's Fab domains bound.

Files are named as (copy number of Fab).(simulation replica ID).(file type extension). The systems were constructed in CHARMM format PSF files and the trajectories were recorded in DCD format.

Simulations were performed with NAMD3. The trajectories were re-centered and re-wrapped about the periodic boundary from the raw trajectories, in order to keep the HA-Fab complex and the lipid bilayer appearing as a single continuous entity instead of isolated molecules at the opposite side of the periodic boundary. Water molecules in the simulation were removed in these trajectories due to file size limitations.
DOI: 10.15468/dl.mzfjzz
title: Occurrence Download

description: A dataset containing 3372 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Barringtonia racemosa (L.) Spreng."
 ]
}

 The dataset includes 3372 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013102-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2fyw3d
title: CCDC 2263034: Experimental Crystal Structure Determination

description: Related Article: Monika Kovačević, Mojca Čakić Semenčić, Martina Bagović, Kristina Radošević, Karla Hanousek Čiča, Jasna Mrvčić, Krešimir Molčanov, Sunčica Roca, Ivan Kodrin, Lidija Barišić|2024|Organometallics|43|2608|doi:10.1021/acs.organomet.4c00248
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fyw4f
title: CCDC 2263035: Experimental Crystal Structure Determination

description: Related Article: Monika Kovačević, Mojca Čakić Semenčić, Martina Bagović, Kristina Radošević, Karla Hanousek Čiča, Jasna Mrvčić, Krešimir Molčanov, Sunčica Roca, Ivan Kodrin, Lidija Barišić|2024|Organometallics|43|2608|doi:10.1021/acs.organomet.4c00248
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k3gms
title: CCDC 2356825: Experimental Crystal Structure Determination

description: Related Article: Wanyu Yan, Qian Hong, Yi Li, Jing Zou, Gang Wang, Zhao-Lin He|2024|J.Org.Chem.|89|14908|doi:10.1021/acs.joc.4c01668
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k3shz
title: CCDC 2357131: Experimental Crystal Structure Determination

description: Related Article: Wanyu Yan, Qian Hong, Yi Li, Jing Zou, Gang Wang, Zhao-Lin He|2024|J.Org.Chem.|89|14908|doi:10.1021/acs.joc.4c01668
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kdnbz
title: CCDC 2365651: Experimental Crystal Structure Determination

description: Related Article: Grigory Kantin, Alexander Sapegin, Dmitry Dar’in|2024|J.Org.Chem.|89|15197|doi:10.1021/acs.joc.4c01973
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kdnd1
title: CCDC 2365653: Experimental Crystal Structure Determination

description: Related Article: Grigory Kantin, Alexander Sapegin, Dmitry Dar’in|2024|J.Org.Chem.|89|15197|doi:10.1021/acs.joc.4c01973
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kdnf2
title: CCDC 2365654: Experimental Crystal Structure Determination

description: Related Article: Grigory Kantin, Alexander Sapegin, Dmitry Dar’in|2024|J.Org.Chem.|89|15197|doi:10.1021/acs.joc.4c01973
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.q2amy6
title: Occurrence Download

description: A dataset containing 3887 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Fabaceae",
 "Year 2024-2024"
 ]
}

 The dataset includes 3887 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013103-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbrehy
title: Occurrence Download

description: A dataset containing 6872 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halimeda opuntia (L.) J.V.Lamour."
 ]
}

 The dataset includes 6872 records from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013104-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hpjjt
title: Occurrence Download

description: A dataset containing 6872 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halimeda opuntia (L.) J.V.Lamour."
 ]
}

 The dataset includes 6872 records from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013105-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15485/2475392
title: Leaf mass area, leaf carbon and nitrogen content of 18 plant species, Seward Peninsula, Alaska, 2023

description: Leaf mass per area (LMA), and leaf carbon and nitrogen content of Arctic vegetation species from three sites on the Seward Peninsula, Alaska. The plants were sampled in July 2023 from the Kougarok Mile 64, Teller Mile 27 and Council sites as part of an ongoing project to improve the understanding of stomatal conductance and photosynthetic parameterization of Arctic plant functional types (PFTs). Species sampled included deciduous tall and dwarf shrubs, forbs, and graminoids, for a total of 18 species. All sampled leaves were used for gas exchange measurements prior to analysis of LMA and leaf carbon and nitrogen content. The data and metadata files included in this data package are in .csv format. See related dataset NGA509 for leaf-level gas exchange measurements and shrub traits (size, thaw depth, soil moisture).The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 15-year research effort (2012-2027) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.6084/m9.figshare.27288624
title: <b>DLEU2 facilitates bladder cancer progression through </b><b>miR-103a-2-5p/SOS1</b><b> axis</b>

description: <b>Background:</b> Bladder cancer (BC) is a life-threatening malignancy of the urinary system. Dysregulation of lncRNA acts vital role in various progression of BC. However, the function with potential regulation mechanism of lncRNA DLEU2 in BC cells remains no clue.<b>Methods:</b> The expression profiles of lncRNAs, miRNAs, along with mRNA in normal bladder tissues or BC tissues were analyzed by utilizing raw data obtained from NCBI GEO database. The lncRNAs, miRNAs, along with mRNA expression in BC cells were evaluated through application of RT-qPCR. CCK-8 along with Edu assay, Transwell along with scratch assay were assessed BC cells proliferation, migration, respectively. Luciferase experiment was exerted to inspect the interaction between DLEU2 with miRNAs (including miR-103a-2-5p), miR-103a-2-5p with SOS1. The SOS1 protein expression in BC cells was evaluated using western blot.<b>Results: </b>DLEU2 was the most differentially high expressed in BC. Functionally, DLEU2 overexpression could facilitate BC cells proliferation with migration, while DLEU2 knockdown had opposite effects. DLEU2 sponged miR-103a-2-5p. miR-103a-2-5p knockdown could facilitate BC cells proliferation with migration, while miR-103a-2-5p knockdown + DLEU2 knockdown had opposite effects. SOS1 was a target of miR-103a-2-5p. SOS1 overexpression could facilitate BC cells proliferation with migration, while SOS1 overexpression + miR-103a-2-5p overexpression had the opposite effects; SOS1 knockdown could block BC cells proliferation with migration, while SOS1 knockdown + miR-103a-2-5p knockdown had opposite effects.<b>Conclusions:</b> Our findings verified that DLEU2 facilitates BC progression through miR-103a-2-5p/SOS1 axis.