cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5696707
title: Additional file 1: of Advances in clinical pharmacy education in Germany: a quasi-experimental single-blinded study to evaluate a patient-centred clinical pharmacy course in psychiatry

description: Results of the OSCE. Spreadsheet showing the results of the OSCE assessment (raw data). (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.5696707.v1
title: Additional file 1: of Advances in clinical pharmacy education in Germany: a quasi-experimental single-blinded study to evaluate a patient-centred clinical pharmacy course in psychiatry

description: Results of the OSCE. Spreadsheet showing the results of the OSCE assessment (raw data). (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.5696698
title: Additional file 7: Table S4. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: Site-specific functions of ANXA1-regulated phosphorylation sites. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.5696698.v1
title: Additional file 7: Table S4. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: Site-specific functions of ANXA1-regulated phosphorylation sites. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.5696683
title: Additional file 6: Table S3. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: List of all identified proteins in mammary epithelial cells from ANXA1-heterozygous and ANXA1-deficient mice. (XLSX 11902 kb)
DOI: 10.6084/m9.figshare.5696683.v1
title: Additional file 6: Table S3. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: List of all identified proteins in mammary epithelial cells from ANXA1-heterozygous and ANXA1-deficient mice. (XLSX 11902 kb)
DOI: 10.6084/m9.figshare.5696650
title: Additional file 4: Table S2. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: List of ANXA1-responsive phosphorylation sites in mammary epithelial cells from ANXA1-heterozygous and ANXA1-deficient mice. (XLSX 1001 kb)
DOI: 10.6084/m9.figshare.5696650.v1
title: Additional file 4: Table S2. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: List of ANXA1-responsive phosphorylation sites in mammary epithelial cells from ANXA1-heterozygous and ANXA1-deficient mice. (XLSX 1001 kb)
DOI: 10.6084/m9.figshare.5696644
title: Additional file 8: Table S6. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Reference sequences used in multiple sequence alignment. Alignment completed with Clustal Omega [78] (XLSX 50 kb)
DOI: 10.6084/m9.figshare.5696644.v1
title: Additional file 8: Table S6. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Reference sequences used in multiple sequence alignment. Alignment completed with Clustal Omega [78] (XLSX 50 kb)
DOI: 10.6084/m9.figshare.5696641
title: Additional file 2: of De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification

description: De novo-assembled Coccinia grandis floral bud transcriptome. Available at https://doi.org/10.6084/m9.figshare.5220874.v1 . (FASTA 4100 kb)
DOI: 10.6084/m9.figshare.5696641.v1
title: Additional file 2: of De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification

description: De novo-assembled Coccinia grandis floral bud transcriptome. Available at https://doi.org/10.6084/m9.figshare.5220874.v1 . (FASTA 4100 kb)
DOI: 10.6084/m9.figshare.5696629
title: Additional file 7: Table S5. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Expression values of soybean MCM genes from the soybean RNASeq expression atlas. Values generated from https://soybase.org (XLSX 48 kb)
DOI: 10.6084/m9.figshare.5696629.v1
title: Additional file 7: Table S5. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Expression values of soybean MCM genes from the soybean RNASeq expression atlas. Values generated from https://soybase.org (XLSX 48 kb)
DOI: 10.6084/m9.figshare.5696605
title: Additional file 6: Table S4. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Percent identity matrix for multiple sequence alignment of MCM peptide sequences. Values represent percent amino acid identity. Values generated using Clustal Omega [78] (XLSX 52 kb)
DOI: 10.6084/m9.figshare.5696605.v1
title: Additional file 6: Table S4. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Percent identity matrix for multiple sequence alignment of MCM peptide sequences. Values represent percent amino acid identity. Values generated using Clustal Omega [78] (XLSX 52 kb)
DOI: 10.6084/m9.figshare.5696587
title: Additional file 1: Table S1. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: List of all identified phosphorylation sites in mammary epithelial cells from ANXA1-heterozygous and ANXA1-deficient mice. (XLSX 10173 kb)
DOI: 10.6084/m9.figshare.5696587.v1
title: Additional file 1: Table S1. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: List of all identified phosphorylation sites in mammary epithelial cells from ANXA1-heterozygous and ANXA1-deficient mice. (XLSX 10173 kb)
DOI: 10.6084/m9.figshare.5696581
title: Additional file 1: of Ibuprofen plasma concentration profile in deliberate ibuprofen overdose with circulatory depression treated with therapeutic plasma exchange: a case report

description: Measured Ibuprofen in plasma (IPC), creatinine and norepinephrine doses, and predicted IPC elimination. Raw Data Set of the measured Ibuprofen in plasma, creatinine and norepinephrine levels and the calculated values for the interpolation of predicted IPC elimination. A - Time course of Ibuprofen plasma concentration measured/predicted and serum-creatinine. B â Norepinephrine-dose and blood pH over time. C â Logarithmic plasma concentration of Ibuprofen (measured/predicted) over time. (XLSX 53Â kb)
DOI: 10.6084/m9.figshare.5696581.v1
title: Additional file 1: of Ibuprofen plasma concentration profile in deliberate ibuprofen overdose with circulatory depression treated with therapeutic plasma exchange: a case report

description: Measured Ibuprofen in plasma (IPC), creatinine and norepinephrine doses, and predicted IPC elimination. Raw Data Set of the measured Ibuprofen in plasma, creatinine and norepinephrine levels and the calculated values for the interpolation of predicted IPC elimination. A - Time course of Ibuprofen plasma concentration measured/predicted and serum-creatinine. B â Norepinephrine-dose and blood pH over time. C â Logarithmic plasma concentration of Ibuprofen (measured/predicted) over time. (XLSX 53Â kb)
DOI: 10.6084/m9.figshare.5696569
title: Additional file 14: Table S9. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: Migration-associated ANXA1-responsive phosphoproteins. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.5696569.v1
title: Additional file 14: Table S9. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: Migration-associated ANXA1-responsive phosphoproteins. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.5696560
title: Additional file 3: Table S3. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Fragment per Kilobase per Million Mapped (FPKM) reads for all abiotic stress treatments. FPKM values were generated using Cufflinks v1.3.0 [75] (XLSX 13221 kb)
DOI: 10.6084/m9.figshare.5696560.v1
title: Additional file 3: Table S3. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Fragment per Kilobase per Million Mapped (FPKM) reads for all abiotic stress treatments. FPKM values were generated using Cufflinks v1.3.0 [75] (XLSX 13221 kb)
DOI: 10.6084/m9.figshare.5696548
title: Additional file 1: of Effectiveness of two community-based strategies on disease knowledge and health behaviour regarding malaria, diarrhoea and pneumonia in Ghana

description: Table S1. Definitions specific to disease knowledge and health behaviour under HBC and CHPS strategies. Table S2 Potential predictors explored by outcome. Table S3 Social and demographic characteristics of respondents. Household survey questionnaire (ODT 108 kb)
DOI: 10.6084/m9.figshare.5696548.v1
title: Additional file 1: of Effectiveness of two community-based strategies on disease knowledge and health behaviour regarding malaria, diarrhoea and pneumonia in Ghana

description: Table S1. Definitions specific to disease knowledge and health behaviour under HBC and CHPS strategies. Table S2 Potential predictors explored by outcome. Table S3 Social and demographic characteristics of respondents. Household survey questionnaire (ODT 108 kb)
DOI: 10.6084/m9.figshare.5696539
title: Additional file 2: Table S2. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Significantly differentially expressed genes in the soybean seed coat to elevated temperature. Genes were considered differentially expressed with a FDR-adjusted p-value of &lt;0.10. logFC = log fold-change; logCPM = log counts per million; FDR = false discovery rate (XLSX 141 kb)
DOI: 10.6084/m9.figshare.5696539.v1
title: Additional file 2: Table S2. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Significantly differentially expressed genes in the soybean seed coat to elevated temperature. Genes were considered differentially expressed with a FDR-adjusted p-value of &lt;0.10. logFC = log fold-change; logCPM = log counts per million; FDR = false discovery rate (XLSX 141 kb)
DOI: 10.6084/m9.figshare.5696533
title: Additional file 12: Table S8. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: Summary of associated pathways and localizations of ANXA1-responsive phosphoproteins. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.5696533.v1
title: Additional file 12: Table S8. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: Summary of associated pathways and localizations of ANXA1-responsive phosphoproteins. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.5696527
title: Additional file 1: Table S1. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Mapping statistics for all libraries used in the RNA-Seq analysis. Reads were trimmed with Cutadapt v1.8 [73] and aligned to the soybean reference genome v1.1 with TopHat v.1.4.1 [74] (XLSX 31 kb)
DOI: 10.6084/m9.figshare.5696527.v1
title: Additional file 1: Table S1. of Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

description: Mapping statistics for all libraries used in the RNA-Seq analysis. Reads were trimmed with Cutadapt v1.8 [73] and aligned to the soybean reference genome v1.1 with TopHat v.1.4.1 [74] (XLSX 31 kb)
DOI: 10.5281/zenodo.4002351
title: Summary wind statistics from NEWA WRF mesoscale ensemble

description: These files contain summary statistics from the NEWA WRF mesoscale ensemble for a Northern European domain. Each netCDF file includes:<br> - Mean wind speed (50, 75, 100 and 150 m AGL)<br> - Surface mean air density<br> - Surface static fields (latitude, longitude, surface elevation and surface roughness)<br> - Wind speed and direction frequency distribution (100 m AGL) The WRF simulation setup and parameterizations correspond to those in the README.ensemble file.
description: {"references": ["https://gmd.copernicus.org/preprints/gmd-2019-349/"]}
DOI: 10.5281/zenodo.4002350
title: Summary wind statistics from NEWA WRF mesoscale ensemble

description: These files contain summary statistics from the NEWA WRF mesoscale ensemble for a Northern European domain. Each netCDF file includes:<br> - Mean wind speed (50, 75, 100 and 150 m AGL)<br> - Surface mean air density<br> - Surface static fields (latitude, longitude, surface elevation and surface roughness)<br> - Wind speed and direction frequency distribution (100 m AGL) The WRF simulation setup and parameterizations correspond to those in the README.ensemble file.
description: {"references": ["https://gmd.copernicus.org/preprints/gmd-2019-349/"]}
DOI: 10.6084/m9.figshare.5696509
title: Additional file 11: Table S7. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: Enrichment of cellular component terms among the different categories. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5696509.v1
title: Additional file 11: Table S7. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: Enrichment of cellular component terms among the different categories. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5696497
title: MOESM2 of Biotic and abiotic drivers of intraspecific trait variation within plant populations of three herbaceous plant species along a latitudinal gradient

description: Additional file 2. The full dataset used for this study. Study species, study region, population code, all trait SD’s and CV’s, latitude and all abiotic and biotic predictors given for each sampled population of Anemone nemorosa, Milium effusum and Impatiens glandulifera. C-signature = mean abundance weighted functional competition signature, CV = coefficient of variation, GDH = growing degree hours, MAP = mean annual precipitation, NA = not available, S-signature = mean abundance weighted functional stress signature, SD = standard deviation, soil N = soil nitrogen, soil P = soil phosphorous.
DOI: 10.6084/m9.figshare.5696497.v1
title: MOESM2 of Biotic and abiotic drivers of intraspecific trait variation within plant populations of three herbaceous plant species along a latitudinal gradient

description: Additional file 2. The full dataset used for this study. Study species, study region, population code, all trait SD’s and CV’s, latitude and all abiotic and biotic predictors given for each sampled population of Anemone nemorosa, Milium effusum and Impatiens glandulifera. C-signature = mean abundance weighted functional competition signature, CV = coefficient of variation, GDH = growing degree hours, MAP = mean annual precipitation, NA = not available, S-signature = mean abundance weighted functional stress signature, SD = standard deviation, soil N = soil nitrogen, soil P = soil phosphorous.
DOI: 10.6084/m9.figshare.5696491
title: Additional file 3: video 2. of Insights into the mechanism of a novel shockwave-assisted needle-free drug delivery device driven by in situ-generated oxyhydrogen mixture which provides efficient protection against mycobacterial infections

description: Schlieren video of the liquid jet containing the drug. The initial oxyhydrogen fill pressure of 2.5Â bars. (XSPF 564 bytes)
DOI: 10.6084/m9.figshare.5696473
title: Additional file 10: Table S6. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: List of all ANXA1-regulated proteins in mammary epithelial cells from ANXA1-heterozygous and ANXA1-deficient mice. (XLSX 819 kb)
DOI: 10.6084/m9.figshare.5696473.v1
title: Additional file 10: Table S6. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells

description: List of all ANXA1-regulated proteins in mammary epithelial cells from ANXA1-heterozygous and ANXA1-deficient mice. (XLSX 819 kb)
DOI: 10.6084/m9.figshare.5696467
title: Additional file 2: video 1. of Insights into the mechanism of a novel shockwave-assisted needle-free drug delivery device driven by in situ-generated oxyhydrogen mixture which provides efficient protection against mycobacterial infections

description: Schlieren video of the blast evolution from the open end of the device. The initial oxyhydrogen fill pressure is 2.5Â bars. (XSPF 564 bytes)
DOI: 10.6084/m9.figshare.5696461
title: Additional file 2: of Serum microRNA array analysis identifies miR-140-3p, miR-33b-3p and miR-671-3p as potential osteoarthritis biomarkers involved in metabolic processes

description: Pathway enrichment analysis for target genes of hsa-miR-33b-3p, hsa-miR-140-3p and hsa-miR-671-3p using DAVID database (p &lt; 0.05). (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.5696461.v1
title: Additional file 2: of Serum microRNA array analysis identifies miR-140-3p, miR-33b-3p and miR-671-3p as potential osteoarthritis biomarkers involved in metabolic processes

description: Pathway enrichment analysis for target genes of hsa-miR-33b-3p, hsa-miR-140-3p and hsa-miR-671-3p using DAVID database (p &lt; 0.05). (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.5696431
title: Dataset for: NMR Elucidation of Monomer-dimer transition and Conformational heterogeneity in Histone-like DNA binding protein of <i>Helicobacter pylori</i> (Hup)

description: <i>Helicobacter pylori</i> (<i>H. pylori</i>) colonizes under harsh acidic/oxidative stress conditions of human gastrointestinal tract and can survive there for infinitely longer durations of host life. The bacterium expresses several harbinger proteins to facilitate its persistent colonization under such conditions. One such protein in <i>H. pylori</i> is Histone like DNA binding protein (Hup) which in its homo-dimeric form binds to DNA to perform various DNA dependent cellular activities. Further, it also plays an important role in protecting the genomic DNA from oxidative stress and acidic denaturation. Legitimately, if the binding of Hup to DNA is suppressed, it will directly impact on the survival of the bacterium, thus making Hup a potential therapeutic target for developing new anti-<i>H. pylori</i> agents. However, to inhibit the binding of Hup to DNA, it is necessary to gain detailed insights into the molecular and structural basis of Hup-dimerization and its binding mechanism to DNA. As a first step in this direction, we report here the NMR assignments and structural features of Hup at pH of 6.0. The study revealed the occurrence of dynamic equilibrium between its monomer and dimer conformations. The dynamic equilibrium was found shifting towards dimer both at low temperature and pH; whereas DNA binding studies evidenced that the protein binds to DNA in its dimeric form. These preliminary investigations correlate very well with the diverse functionality of protein and will form the basis for future studies aiming to develop novel anti-<i>H. pylori</i> agents employing structure-based-rational drug discovery approach.
DOI: 10.6084/m9.figshare.5696431.v1
title: Dataset for: NMR Elucidation of Monomer-dimer transition and Conformational heterogeneity in Histone-like DNA binding protein of <i>Helicobacter pylori</i> (Hup)

description: <i>Helicobacter pylori</i> (<i>H. pylori</i>) colonizes under harsh acidic/oxidative stress conditions of human gastrointestinal tract and can survive there for infinitely longer durations of host life. The bacterium expresses several harbinger proteins to facilitate its persistent colonization under such conditions. One such protein in <i>H. pylori</i> is Histone like DNA binding protein (Hup) which in its homo-dimeric form binds to DNA to perform various DNA dependent cellular activities. Further, it also plays an important role in protecting the genomic DNA from oxidative stress and acidic denaturation. Legitimately, if the binding of Hup to DNA is suppressed, it will directly impact on the survival of the bacterium, thus making Hup a potential therapeutic target for developing new anti-<i>H. pylori</i> agents. However, to inhibit the binding of Hup to DNA, it is necessary to gain detailed insights into the molecular and structural basis of Hup-dimerization and its binding mechanism to DNA. As a first step in this direction, we report here the NMR assignments and structural features of Hup at pH of 6.0. The study revealed the occurrence of dynamic equilibrium between its monomer and dimer conformations. The dynamic equilibrium was found shifting towards dimer both at low temperature and pH; whereas DNA binding studies evidenced that the protein binds to DNA in its dimeric form. These preliminary investigations correlate very well with the diverse functionality of protein and will form the basis for future studies aiming to develop novel anti-<i>H. pylori</i> agents employing structure-based-rational drug discovery approach.
DOI: 10.6084/m9.figshare.5696251
title: Freshwater mussels from South America: state of the art of Unionida, specially Rhipidodontini

description: Abstract Unionida is the most diverse clade of freshwater bivalves. Among the groups occurring in South America, one with the highest number of species is Rhipidodontini (Hyriidae, Unionida, Paleoheterodonta, Bivalvia). However several issues remains on taxonomy and systematic of this group, leading to problems on species identification, description, as also as a limiting factor to other type of studies (e.g., ecology, conservation,…). In this paper is presented a synthesis of available knowledge about Diplodon Spix in Wagner, 1827 and Rhipidodonta Mörch, 1853 in South America, as a first step in order to a better understating of Rhipidodontini. The evaluation of different authors exposes the little agreement between them that resulted in a sort of divergent taxonomical opinions. Some comments on ecology, conservation and habitat preferences were made. This work can also encourage future research on taxonomy, systematic, ecology and conservation of freshwater mussels in South America.
DOI: 10.6084/m9.figshare.5696251.v1
title: Freshwater mussels from South America: state of the art of Unionida, specially Rhipidodontini

description: Abstract Unionida is the most diverse clade of freshwater bivalves. Among the groups occurring in South America, one with the highest number of species is Rhipidodontini (Hyriidae, Unionida, Paleoheterodonta, Bivalvia). However several issues remains on taxonomy and systematic of this group, leading to problems on species identification, description, as also as a limiting factor to other type of studies (e.g., ecology, conservation,…). In this paper is presented a synthesis of available knowledge about Diplodon Spix in Wagner, 1827 and Rhipidodonta Mörch, 1853 in South America, as a first step in order to a better understating of Rhipidodontini. The evaluation of different authors exposes the little agreement between them that resulted in a sort of divergent taxonomical opinions. Some comments on ecology, conservation and habitat preferences were made. This work can also encourage future research on taxonomy, systematic, ecology and conservation of freshwater mussels in South America.