cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3617504_d1
title: Additional file 1: Table S1. of miR-491 regulates glioma cells proliferation by targeting TRIM28 in vitro

description: miR-491 expression, OS and PFS of 512 GBM tissues from TCGA database. 405 GBM cases were assigned to low expression group and the other 107 GBM cases were assigned to high expression group. The cut-off value was 6.962409973 which was calculated by X-tile software. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3617498_d1
title: Additional file 2: Table S1. of Extensive alterations of the whole-blood transcriptome are associated with body mass index: results of an mRNA profiling study involving two large population-based cohorts

description: Results of the SHIP-TREND/KORA F4 meta-analysis with p (BH)
DOI: 10.6084/m9.figshare.c.3617399_d11
title: Additional file 12: Table S3. of Disrupted cooperation between transcription factors across diverse cancer types

description: List of IRF8â  s targets and those involved in stress response in NSCLC. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3617399_d9
title: Additional file 11: Table S2. of Disrupted cooperation between transcription factors across diverse cancer types

description: Encode DNase-seq data used to filter motif hits. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3617399_d7
title: Additional file 7: Table S1. of Disrupted cooperation between transcription factors across diverse cancer types

description: Identified highly dyscooperated TFs of each cancer type. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3617348_d4
title: Additional file 2: Table S1-S3. of Genome-wide association study (GWAS) reveals the genetic architecture of four husk traits in maize

description: List of primers used in the study. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3617279_d3
title: Additional file 14: Table S7. of A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes

description: Drug targets in 3-TF signature and reported gene expression signatures. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3617279_d4
title: Additional file 5: Table S4. of A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes

description: Hazard ratio values of 17 non-TF in 20 target genes. (XLSX 14 kb)
DOI: 10.15468/dl.h6hbnt
title: Occurrence Download

description: A dataset containing 549 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (January, July, February)",
 "OccurrenceStatus is Present",
 "TaxonKey is Hippopotamus amphibius Linnaeus, 1758",
 "Year 2023-2024"
 ]
}

 The dataset includes 549 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032198-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3617234_d1
title: MOESM1 of SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing

description: Additional file 1. Library detail information.
DOI: 10.15468/dl.rsnn7g
title: Occurrence Download

description: A dataset containing 561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1019.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus durangensis Martínez"
 ]
}

 The dataset includes 561 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032199-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2y3jme
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Delphinus griseus G.Cuvier, 1812",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032200-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3616763_d1
title: Additional file 4: of Whole exome sequencing identifies novel candidate genes that modify chronic obstructive pulmonary disease susceptibility

description: siRNA screening in vitro analysis for 81 COPD candidate genes. For the 81 candidate genes, the detailed gene information, selection method, and annotation are shown in the tab "Gene Selection Methods". The siRNA knockdown results in three trials are shown in the tab "siRNA summary". (XLSX 92.6 kb)
DOI: 10.6084/m9.figshare.c.3616667_d13
title: Additional file 5: Table S4. of 
                     De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

description: Functional annotation of non-redundant unigenes against KEGG database. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3616667_d10
title: Additional file 2: Table S1. of 
                     De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

description: Gene specific primers used in qRT-PCR. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3616667_d9
title: Additional file 6: Table S5. of 
                     De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

description: Expression of somatic embryogenesis-related genes in IZE, IZE_Suc and SE_5w in camphor tree based on the results of RNA-Seq. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3616667_d8
title: Additional file 10: Table S7. of 
                     De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

description: The top 10 GO terms of up-regulated and down-regulated DEGs in the three comparisons based on biological process. (XLSX 13 kb)
DOI: 10.15468/dl.ypf9uv
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paralithodes brevipes (H.Milne-Edwards & Lucas, 1841)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032201-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616667_d6
title: Additional file 3: Table S2. of 
                     De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

description: Length and number distribution of the unigenes. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3616667_d5
title: Additional file 4: Table S3. of 
                     De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

description: Functional annotation of non-redundant unigenes against Nr, Nt, Swiss-Prot, PFAM, GO and KOG databases. (XLSX 19135 kb)
DOI: 10.6084/m9.figshare.c.3616508_d6
title: Additional file 5: Table S3. of Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates

description: Genes shared by Bacillus amyloliquefaciens SQR9 and B. amyloliquefaciens FZB42 but absent in Bacillus subtilis 168 (Sheet 1), or shared by SQR9 and 168 but absent in FZB42 (Sheet 2). (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3616508_d5
title: Additional file 2: Table S1. of Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates

description: Novel noncoding RNAs predicted by Rockhopper. The expression level listed in the table was obtained by Rockhopper. Con_24, negative control, 24 h post- inoculation; Ma_24, maize root exudates treatment, 24 h post-inoculation; Con_48, negative control, 48 h post-inoculation; Ma_48, maize root exudates treatment, 48 h post-inoculation. (XLSX 26 kb)
DOI: 10.15468/dl.ks9ucw
title: Occurrence Download

description: A dataset containing 809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "Geometry POLYGON((2.28931 49.46397,6.38129 49.46397,6.38129 51.49735,2.28931 51.49735,2.28931 49.46397))",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Mustela erminea Linnaeus, 1758, Felis silvestris Schreber, 1777, Lutraria lutraria (Linnaeus, 1758), Castor fiber Linnaeus, 1758)",
 "Year 2024-2024"
 ]
}

 The dataset includes 809 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032202-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616508_d3
title: Additional file 14: Table S8. of Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates

description: Composition of maize root exudates analyzed by gas chromatographyâ  mass spectrometry. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3616406_d3
title: Additional file 3: of Heterologous Expression and Functional Analysis of Rice GLUTAMATE RECEPTOR-LIKE Family Indicates its Role in Glutamate Triggered Calcium Flux in Rice Roots

description: The information of OsGLR genes in rice. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3616406_d1
title: Additional file 10: of Heterologous Expression and Functional Analysis of Rice GLUTAMATE RECEPTOR-LIKE Family Indicates its Role in Glutamate Triggered Calcium Flux in Rice Roots

description: The sequences of primers used in this research. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3616400_d2
title: Additional file 1: of Genomic data mining reveals a rich repertoire of transport proteins in Streptomyces

description: A detailed description of transporters in eleven Streptomyces genomes. The file includs protein IDs, names, annotations, protein lengths, Pfam domains, number of TMSs, and their homologs in TCDB with the BLASTP E-value. (XLSX 918 kb)
DOI: 10.6084/m9.figshare.c.3616400_d1
title: Additional file 2: of Genomic data mining reveals a rich repertoire of transport proteins in Streptomyces

description: The classification of Streptomyces transporters. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.c.3616304_d7
title: Additional file 7: S8. of Molecular microevolution and epigenetic patterns of the long non-coding gene H19 show its potential function in pig domestication and breed divergence

description: The mapping file of unpublished single-base resolution methylation data and transcriptome of liver in Enshi pig, Landrace and Wild pig (sam file). (RAR 16698 kb)
DOI: 10.6084/m9.figshare.c.3616304_d6
title: Additional file 3: S9. of Molecular microevolution and epigenetic patterns of the long non-coding gene H19 show its potential function in pig domestication and breed divergence

description: Perl scripts which used in this article, including clean script, perl scripts which were used to calculate pi and Fst with sliding window, and perl scripts which were used to analyze ASM. (RAR 35 kb)
DOI: 10.6084/m9.figshare.c.3616304_d5
title: Additional file 2: S7. of Molecular microevolution and epigenetic patterns of the long non-coding gene H19 show its potential function in pig domestication and breed divergence

description: The information of SNP and ASM sites in ES, LB, GZWB. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3616331_d2
title: Additional file 11: of Extensive horizontal gene transfers between plant pathogenic fungi

description: Single-gene trees (Newick format) for the final sets of horizontal gene transfer (HGTs) that are transferred between Magnaporthales (using M. incrustans and O. dolichostomum as references) and Colletotrichum and those correspond to HGT types IIâ  IV. (TXT 1064 kb)
DOI: 10.6084/m9.figshare.c.3616304_d4
title: Additional file 5: S2. of Molecular microevolution and epigenetic patterns of the long non-coding gene H19 show its potential function in pig domestication and breed divergence

description: The result of CpG report of H19 completely sequence (GenBank: AY044827) in Guizhou wild boar according to the single base methylation data which has not published. (TXT 197 kb)
DOI: 10.6084/m9.figshare.c.3616304_d2
title: Additional file 9: S5. of Molecular microevolution and epigenetic patterns of the long non-coding gene H19 show its potential function in pig domestication and breed divergence

description: The transcript information of H19 completely sequence (GenBank: AY044827) in Guizhou wild boar according to the transcriptome data. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3616304_d1
title: Additional file 6: S3. of Molecular microevolution and epigenetic patterns of the long non-coding gene H19 show its potential function in pig domestication and breed divergence

description: The result of CpG report of H19 completely sequence (GenBank: AY044827) in Landrace according to the single base methylation data which has not published. (TXT 197 kb)
DOI: 10.15468/dl.mngbg9
title: Occurrence Download

description: A dataset containing 575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coryphaenoides nasutus Günther, 1877",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 575 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032203-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616238_d5
title: Additional file 4: of Genome-wide identification of the Jatropha curcas MYB family and functional analysis of the abiotic stress responsive gene JcMYB2

description: The sequence of the RACE PCR. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3616238_d6
title: Additional file 1: of Genome-wide identification of the Jatropha curcas MYB family and functional analysis of the abiotic stress responsive gene JcMYB2

description: The character of these 123 R2R3 MYB proteins. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3616238_d4
title: Additional file 2: of Genome-wide identification of the Jatropha curcas MYB family and functional analysis of the abiotic stress responsive gene JcMYB2

description: The alignment file of MYB binding domain of Arabidopsis and Jatropha curcas. Alignment analyses were conducted in MEGA5.2. (FAS 95 kb)
DOI: 10.6084/m9.figshare.c.3616238_d3
title: Additional file 5: of Genome-wide identification of the Jatropha curcas MYB family and functional analysis of the abiotic stress responsive gene JcMYB2

description: The composition of MYB proteins in plants. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3616238_d1
title: Additional file 6: of Genome-wide identification of the Jatropha curcas MYB family and functional analysis of the abiotic stress responsive gene JcMYB2

description: Primers used in this study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3616154_d1
title: Additional file 4: Table S2. of Pitfalls of improperly procured adjacent non-neoplastic tissue for somatic mutation analysis using next-generation sequencing

description: Detailed information of all somatic mutations identified by WES, including coverage, variant allele fraction (VAF) and the predicted amino acid changes. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3616145_d2
title: Additional file 11: Table S10. of Genome-wide investigation and expression analyses of the pentatricopeptide repeat protein gene family in foxtail millet

description: The Ka/Ks ratios and the estimated divergence times for orthologous SiPPR proteins between foxtail millet and rice. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3616148_d2
title: Additional file 2 of Multi-omic measurement of mutually exclusive loss-of-function enriches for candidate synthetic lethal gene pairs

description: The RNAi analysis script, performed in R. (R 39 kb)
DOI: 10.6084/m9.figshare.c.3616148_d1
title: Additional file 3: Table S1. of Multi-omic measurement of mutually exclusive loss-of-function enriches for candidate synthetic lethal gene pairs

description: Output from the CCLE genomic workflow (BEEM) and mapping to genes from the Hoffman epigenetic screen, the Costanzo yeast screen and known tumour suppressor genes. Table S2. Output from the CCLE expression (BiGEE) workflow and mapping to genes from the Hoffman epigenetic screen, the Costanzo yeast screen and known tumour suppressor genes. Table S3. Output from the copy genomic (BEEM) workflow and mapping to genes from the Hoffman epigenetic screen, the Costanzo yeast screen and known tumour suppressor genes. Table S4. Epigenetic Analysis: Genomic workflow (BEEM). Table S5. Epigenetic Analysis: Expression workflow (BiGEE). Table S6. Output from the gene expression workflow (BiGEE) mapped to genes from the Lu et al. publication. Table S7. Output from the gene expression workflow (BEEM) mapped to genes from the Lu et al. publication. Table S8. Output from the LUAD Genomic (BEEM) workflow and mapping to genes from the Hoffman epigenetic screen, the Costanzo yeast screen and known tumour suppressor genes. Table S9. Output from the LUAD expression (BiGEE) workflow and mapping to genes from the Hoffman epigenetic screen, the Costanzo yeast screen and known tumour suppressor genes. Table S10. Simulation results for the likelihood method (p value), Kurtosis method (p value), bimodal index (1.1â  1.5) and BIG (BiSEp) (p value). (XLSX 8250 kb)
DOI: 10.6084/m9.figshare.c.3616127_d2
title: Additional file 1: of Intimate partner violence against married rural-to-urban migrant workers in eastern China: prevalence, patterns, and associated factors

description: Data used in this paper. Description of data: data of socio-demographic information and intimate partner violence among migrant workers in eastern China. (XLS 1363 kb)
DOI: 10.6084/m9.figshare.c.3616070_d5
title: Additional file 5: Table S7. of Genome-wide characterization of non-reference transposons in crops suggests non-random insertion

description: GO enrichment of genes with non-ref TEs in rice, maize and sorghum. (XLS 55 kb)
DOI: 10.6084/m9.figshare.c.3616070_d4
title: Additional file 1: Table S4. of Genome-wide characterization of non-reference transposons in crops suggests non-random insertion

description: Numbers of non-ref TEs and reads depths in rice, maize and sorghum accessions. (XLS 53 kb)
DOI: 10.6084/m9.figshare.c.3616070_d3
title: Additional file 3: Table S5. of Genome-wide characterization of non-reference transposons in crops suggests non-random insertion

description: Classification of non-ref TEs in crops. (XLS 62 kb)
DOI: 10.6084/m9.figshare.c.3616070_d1
title: Additional file 4: Table S6. of Genome-wide characterization of non-reference transposons in crops suggests non-random insertion

description: Top 30 represented InterPro terms from the InterProScan annotations. (XLS 41 kb)
DOI: 10.6084/m9.figshare.c.3616040_d3
title: Additional file 3: Table S2. of A randomized trial of the efficacy and safety of quilizumab in adults with inadequately controlled allergic asthma

description: FEV1 at Week 36 (all patients and biomarker subgroups). (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.c.3616040_d2
title: Additional file 2: Table S1. of A randomized trial of the efficacy and safety of quilizumab in adults with inadequately controlled allergic asthma

description: FEV1 at Week 12 (all patients and biomarker subgroups). (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3615902_d4
title: Additional file 3: Table S2. of Comparative proteomic analyses of Asian cotton ovules with attached fibers in the early stages of fiber elongation process

description: Information of the identified 55 DDP spots. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3615902_d1
title: Additional file 2: Table S1. of Comparative proteomic analyses of Asian cotton ovules with attached fibers in the early stages of fiber elongation process

description: Relative abundance of the 55 DDP spots. (XLSX 19 kb)
DOI: 10.15468/dl.6egyq3
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coryphaenoides microps (Smith & Radcliffe, 1912)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032204-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3615806_d16
title: Additional file 3: Table S2. of Single-cell analysis of long non-coding RNAs in the developing human neocortex

description: Related to Fig.Â 1. Expression table of all bulk tissue samples and genes (including known and novel lncRNAs) according to the polyA Full transcriptome reference. Expression values are in TPM (Transcripts per Million). (XLS 9972 kb)
DOI: 10.6084/m9.figshare.c.3615806_d15
title: Additional file 6: Table S4. of Single-cell analysis of long non-coding RNAs in the developing human neocortex

description: Related to Fig.Â 2a. Expression table of all bulk tissue samples and differentially expressed genes, using polyA data. Expression values are in TPM (Transcripts per Million). (XLS 336 kb)
DOI: 10.6084/m9.figshare.c.3615743_d6
title: Additional file 6: Table S4. of 
                     De novo assembly and analysis of the transcriptome of Ocimum americanum var. pilosum under cold stress

description: Primer information. (XLSX 38 kb).
DOI: 10.6084/m9.figshare.c.3615743_d5
title: Additional file 3: Table S3. of 
                     De novo assembly and analysis of the transcriptome of Ocimum americanum var. pilosum under cold stress

description: Pathways annotated by KEGG analysis. (XLS 221 kb).
DOI: 10.6084/m9.figshare.c.3615743_d3
title: Additional file 2: Table S2. of 
                     De novo assembly and analysis of the transcriptome of Ocimum americanum var. pilosum under cold stress

description: Similarities between O. americanum var. pilosum and other species. (XLS 70 kb).
DOI: 10.6084/m9.figshare.c.3615749_d1
title: Additional file 1: Table S1. of DNA-binding sequence specificity of DUX4

description: Oligos used in this study. (XLS 32.5 KB)
DOI: 10.6084/m9.figshare.c.3615743_d1
title: Additional file 1: Table S1. of 
                     De novo assembly and analysis of the transcriptome of Ocimum americanum var. pilosum under cold stress

description: List of annotated unigenes and lists of up-regulated genes and down-regulated genes in chilling-treated samples. (XLS 14564 kb).
DOI: 10.6084/m9.figshare.c.3615698_d10
title: Additional file 1: Table S1. of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

description: Summary of RNA-seq data and reads mapped to the Capra hircus reference genome. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3615698_d9
title: Additional file 9: Table S7. of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

description: Functional enrichment analysis of protein-coding genes co-expressed with lncRNAs. (XLSX 160 kb)
DOI: 10.6084/m9.figshare.c.3615698_d7
title: Additional file 7: Table S5. of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

description: Functional enrichment analysis of protein-coding genes targeted by cis-acting lncRNAs. (XLSX 47 kb)