cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2h4nt4
title: CCDC 2298396: Experimental Crystal Structure Determination

description: Related Article: Rasha K. Al-Shewiki, Saddam Weheabby, Nell Uhlig, Marcus Korb, Tom Pester, Stefan Zahn, S. Grecchi, P. R. Mussini, Tobias Rüffer, Heinrich Lang|2024|Dalton Trans.|53|3836|doi:10.1039/D3DT03950A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h5k7h
title: CCDC 2299246: Experimental Crystal Structure Determination

description: Related Article: Luca Rigamonti, Lorenzo Marchi, Valentina Fiorini, Stefano Stagni, Stefano Zacchini, Dawid Pinkowicz, Katarzyna Dziedzic-Kocurek, Alessandra Forni, Francesco Muniz Miranda, Rita Mazzoni|2024|Dalton Trans.|53|3490|doi:10.1039/D3DT04026G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.25010335
title: Additional file 2 of YGL3 Encoding an IPP and DMAPP Synthase Interacts with OsPIL11 to Regulate Chloroplast Development in Rice

description: Supplementary Material 2: Table S1. Analysis the genetic characteristic of ygl3
DOI: 10.6084/m9.figshare.25010335.v1
title: Additional file 2 of YGL3 Encoding an IPP and DMAPP Synthase Interacts with OsPIL11 to Regulate Chloroplast Development in Rice

description: Supplementary Material 2: Table S1. Analysis the genetic characteristic of ygl3
DOI: 10.6084/m9.figshare.25010363
title: Additional file 1 of Quercetin inhibits caspase-1-dependent macrophage pyroptosis in experimental folic acid nephropathy

description: Additional file 1. Target genes of quercetin.
DOI: 10.6084/m9.figshare.25010363.v1
title: Additional file 1 of Quercetin inhibits caspase-1-dependent macrophage pyroptosis in experimental folic acid nephropathy

description: Additional file 1. Target genes of quercetin.
DOI: 10.6084/m9.figshare.11377743.v1
title: MOESM1 of MicroRNA-338-3p suppresses ovarian cancer cells growth and metastasis: implication of Wnt/catenin beta and MEK/ERK signaling pathways

description: Additional file 1. KEGG Pathways Enrichment Analysis results.
DOI: 10.6084/m9.figshare.16621765
title: Transcriptome analysis and genetic diversity of <i>Allium victorialis</i> germplasms from the Changbai Mountains

description: The Changbai Mountains comprise one of the main distribution areas of <i>A. victorialis</i> in China, and this species is endangered owing to habitat changes and overexploitation. However, <i>A. victorialis</i> germplasms have not been systematically collected and studied. The aims of this study were to obtain some detailed genetic information, analyze the genetic diversity, and further promote the protection of <i>A. victorialis</i> germplasms from the Changbai Mountains. Transcriptomic analysis was performed with six <i>A. victorialis</i> samples collected from the Changbai Mountains. At least 146,759 genes for each sample were obtained after performing <i>de novo</i> assembly of the RNA-seq data, and at least 92% of these genes were found to have only one mRNA isoform. These sequences and their functional annotations provided a large-scale genetic resource of this species. Phylogenetic analysis showed that <i>A. victorialis</i> was genetically distant from some related species, e.g. <i>Allium sativum</i>, <i>Allium fistulosum</i>, and <i>Allium cepa</i>, but genetically close to <i>Allium tuberosum</i>. The two <i>A. victorialis</i> var. <i>listera</i> samples were phylogenetically separated from the other four samples, and these two samples should be regarded as <i>Allium listera</i>. In addition, two KASP markers for discriminating the Dongfeng samples from the other four <i>A</i>. <i>victorialis</i> samples were successfully developed. This study lays the foundation for future studies on the genetic diversity and evolution of <i>Allium</i> species, as well as for the conservation of <i>A. victorialis</i> germplasms from the Changbai Mountains and other populations of this species.
DOI: 10.6084/m9.figshare.11377752.v1
title: MOESM1 of Quantitative proteomic characterization of human sperm cryopreservation: using data-independent acquisition mass spectrometry

description: Additional file 1: Table S1. The differential proteins due to cryopreservtaion.
DOI: 10.6084/m9.figshare.11377752
title: MOESM1 of Quantitative proteomic characterization of human sperm cryopreservation: using data-independent acquisition mass spectrometry

description: Additional file 1: Table S1. The differential proteins due to cryopreservtaion.
DOI: 10.6084/m9.figshare.11377761.v1
title: MOESM2 of Quantitative proteomic characterization of human sperm cryopreservation: using data-independent acquisition mass spectrometry

description: Additional file 2: Table S2. The results of the GO enrichment.
DOI: 10.6084/m9.figshare.11377761
title: MOESM2 of Quantitative proteomic characterization of human sperm cryopreservation: using data-independent acquisition mass spectrometry

description: Additional file 2: Table S2. The results of the GO enrichment.
DOI: 10.6084/m9.figshare.11377758.v1
title: MOESM2 of Learning important features from multi-view data to predict drug side effects

description: Additional file 2. Additional tables.
DOI: 10.6084/m9.figshare.11377758
title: MOESM2 of Learning important features from multi-view data to predict drug side effects

description: Additional file 2. Additional tables.
DOI: 10.6084/m9.figshare.11377809.v1
title: MOESM1 of Investigating the anatomical relationship between the maxillary molars and the sinus floor in a Chinese population using cone-beam computed tomography

description: Additional file 1. Raw data of the measurement.
DOI: 10.6084/m9.figshare.11377809
title: MOESM1 of Investigating the anatomical relationship between the maxillary molars and the sinus floor in a Chinese population using cone-beam computed tomography

description: Additional file 1. Raw data of the measurement.
DOI: 10.6084/m9.figshare.25010416
title: Additional file 1 of Causal relationships between type 1 diabetes mellitus and Alzheimer’s disease and Parkinson’s disease: a bidirectional two-sample Mendelian randomization study

description: Additional file 1: Figures S1–S6. Heterogeneity and Horizontal pleiotropy analysis of IVW between AD and PD and T1DM.
DOI: 10.6084/m9.figshare.25010416.v1
title: Additional file 1 of Causal relationships between type 1 diabetes mellitus and Alzheimer’s disease and Parkinson’s disease: a bidirectional two-sample Mendelian randomization study

description: Additional file 1: Figures S1–S6. Heterogeneity and Horizontal pleiotropy analysis of IVW between AD and PD and T1DM.
DOI: 10.6084/m9.figshare.19242181.v1
title: Additional file 10 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 10: Validation of association between mt3397G, mt3552A genotypes and HAPE susceptibility.
DOI: 10.6084/m9.figshare.19242187
title: Additional file 1 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 1: Basic clinical information of all the patients.
DOI: 10.6084/m9.figshare.19242157.v1
title: Additional file 3 of Triglyceride-glucose index trajectory and arterial stiffness: results from Hanzhong Adolescent Hypertension Cohort Study

description: Additional file 3: Table S3. Comparison of characteristics in 1987 between participants and non-participants in the cross-sectional study.
DOI: 10.6084/m9.figshare.19766426.v1
title: Additional file 7 of Diagnostic and prognostic values of pyroptosis-related genes for the hepatocellular carcinoma

description: Additional file 7. The pyroptosis related DEGs between the non-tumor and tumor samples in the TCGA cohort.
DOI: 10.6084/m9.figshare.19242160
title: Additional file 4 of Triglyceride-glucose index trajectory and arterial stiffness: results from Hanzhong Adolescent Hypertension Cohort Study

description: Additional file 4: Table S4. Comparison of characteristics in 2005 between participants and non-participants in the longitudinal study.
DOI: 10.6084/m9.figshare.19242160.v1
title: Additional file 4 of Triglyceride-glucose index trajectory and arterial stiffness: results from Hanzhong Adolescent Hypertension Cohort Study

description: Additional file 4: Table S4. Comparison of characteristics in 2005 between participants and non-participants in the longitudinal study.
DOI: 10.6084/m9.figshare.19766420.v1
title: Additional file 5 of Diagnostic and prognostic values of pyroptosis-related genes for the hepatocellular carcinoma

description: Additional file 5. The gene set associated with the immune-related pathways.
DOI: 10.6084/m9.figshare.25010426
title: Additional file 2 of CXCL9 may serve as a potential biomarker for primary Sjögren’s syndrome with extra-glandular manifestations

description: Additional file 2: Table S2. The correlation between top 20 DEGs and clinical features.
DOI: 10.6084/m9.figshare.19242148.v1
title: Additional file 1 of Triglyceride-glucose index trajectory and arterial stiffness: results from Hanzhong Adolescent Hypertension Cohort Study

description: Additional file 1: Table S1. Characteristics of participants in 2017 according to TyG index trajectory (n=180).
DOI: 10.6084/m9.figshare.19766420
title: Additional file 5 of Diagnostic and prognostic values of pyroptosis-related genes for the hepatocellular carcinoma

description: Additional file 5. The gene set associated with the immune-related pathways.
DOI: 10.6084/m9.figshare.25010426.v1
title: Additional file 2 of CXCL9 may serve as a potential biomarker for primary Sjögren’s syndrome with extra-glandular manifestations

description: Additional file 2: Table S2. The correlation between top 20 DEGs and clinical features.
DOI: 10.6084/m9.figshare.19766429.v1
title: Additional file 8 of Diagnostic and prognostic values of pyroptosis-related genes for the hepatocellular carcinoma

description: Additional file 8. The pyroptosis related DEGs between the non-tumor and tumor samples in the ICGC cohort.
DOI: 10.6084/m9.figshare.19766417.v1
title: Additional file 4 of Diagnostic and prognostic values of pyroptosis-related genes for the hepatocellular carcinoma

description: Additional file 4. The gene set associated with the immune cell subtypes.
DOI: 10.6084/m9.figshare.19242157
title: Additional file 3 of Triglyceride-glucose index trajectory and arterial stiffness: results from Hanzhong Adolescent Hypertension Cohort Study

description: Additional file 3: Table S3. Comparison of characteristics in 1987 between participants and non-participants in the cross-sectional study.
DOI: 10.6084/m9.figshare.19766429
title: Additional file 8 of Diagnostic and prognostic values of pyroptosis-related genes for the hepatocellular carcinoma

description: Additional file 8. The pyroptosis related DEGs between the non-tumor and tumor samples in the ICGC cohort.
DOI: 10.6084/m9.figshare.19242154.v1
title: Additional file 2 of Triglyceride-glucose index trajectory and arterial stiffness: results from Hanzhong Adolescent Hypertension Cohort Study

description: Additional file 2: Table S2. Association of TyG index trajectories with high-risk baPWV in 12-year follow-ups (sensitivity analysis).
DOI: 10.6084/m9.figshare.19242154
title: Additional file 2 of Triglyceride-glucose index trajectory and arterial stiffness: results from Hanzhong Adolescent Hypertension Cohort Study

description: Additional file 2: Table S2. Association of TyG index trajectories with high-risk baPWV in 12-year follow-ups (sensitivity analysis).
DOI: 10.6084/m9.figshare.25010429
title: Additional file 3 of CXCL9 may serve as a potential biomarker for primary Sjögren’s syndrome with extra-glandular manifestations

description: Additional file 3: Table S3. The results of the Shapiro–Wilk test.
DOI: 10.6084/m9.figshare.19242148
title: Additional file 1 of Triglyceride-glucose index trajectory and arterial stiffness: results from Hanzhong Adolescent Hypertension Cohort Study

description: Additional file 1: Table S1. Characteristics of participants in 2017 according to TyG index trajectory (n=180).
DOI: 10.6084/m9.figshare.19766417
title: Additional file 4 of Diagnostic and prognostic values of pyroptosis-related genes for the hepatocellular carcinoma

description: Additional file 4. The gene set associated with the immune cell subtypes.
DOI: 10.6084/m9.figshare.19766426
title: Additional file 7 of Diagnostic and prognostic values of pyroptosis-related genes for the hepatocellular carcinoma

description: Additional file 7. The pyroptosis related DEGs between the non-tumor and tumor samples in the TCGA cohort.
DOI: 10.6084/m9.figshare.25010429.v1
title: Additional file 3 of CXCL9 may serve as a potential biomarker for primary Sjögren’s syndrome with extra-glandular manifestations

description: Additional file 3: Table S3. The results of the Shapiro–Wilk test.
DOI: 10.6084/m9.figshare.11377872
title: MOESM1 of Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study

description: Additional file 1. General information and phenotypic data of 278 accessions used in this study.
DOI: 10.6084/m9.figshare.19242202.v1
title: Additional file 4 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 4: Number and proportion of mutations in different regions of mtDNA.
DOI: 10.6084/m9.figshare.19242187.v1
title: Additional file 1 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 1: Basic clinical information of all the patients.
DOI: 10.6084/m9.figshare.23961976
title: Additional file 2 of Evolutionary analysis of the mTOR pathway provide insights into lifespan extension across mammals

description: Additional file 2: Table S1. Longevity-associated traits of 48 mammals used in the present study. Table S2. Positively selected genes identified based on the branch-site model of PAML in mTOR pathway. Table S3. Genes inferred to be under positive selection using BUSTED models in mTOR pathway. Table S4. Selective pressure analyses of mTOR pathway genes by site model. Table S5. Results of selective pressure analyses of random-set genes. Table S6. Root-to-tip ω of mTOR pathway genes used in this study. Table S7. Summary of mTOR pathway genes with a root-to-tip dN/dS significantly correlated with maximum lifespan (MLS), longevity quotient (LQ), body mass (BM). Table S8. Random-set genes correlated with longevity associated traits and root-to-tip ω values of random-set genes. Table S9. Longevity-associated traits of other species with the same convergent sites as the long-lived species in this study. Table S10. Protein domains of convergent amino sites. Table S11. List of mTOR pathway genes used in the present study. Table S12. Random-set genes list.
DOI: 10.6084/m9.figshare.23961976.v1
title: Additional file 2 of Evolutionary analysis of the mTOR pathway provide insights into lifespan extension across mammals

description: Additional file 2: Table S1. Longevity-associated traits of 48 mammals used in the present study. Table S2. Positively selected genes identified based on the branch-site model of PAML in mTOR pathway. Table S3. Genes inferred to be under positive selection using BUSTED models in mTOR pathway. Table S4. Selective pressure analyses of mTOR pathway genes by site model. Table S5. Results of selective pressure analyses of random-set genes. Table S6. Root-to-tip ω of mTOR pathway genes used in this study. Table S7. Summary of mTOR pathway genes with a root-to-tip dN/dS significantly correlated with maximum lifespan (MLS), longevity quotient (LQ), body mass (BM). Table S8. Random-set genes correlated with longevity associated traits and root-to-tip ω values of random-set genes. Table S9. Longevity-associated traits of other species with the same convergent sites as the long-lived species in this study. Table S10. Protein domains of convergent amino sites. Table S11. List of mTOR pathway genes used in the present study. Table S12. Random-set genes list.
DOI: 10.6084/m9.figshare.15049086
title: Stem-mapped plot data from species-rich forest ecosystems in south China

description: The dataset includes twenty-two permanent plot
data (30 ha in total) from species-rich forest ecosystems in south china. Data from the fully
mapped plots includes all live trees larger than 1 cm, and each individual tree
was tagged, numbered, mapped and their species and diameters at breast height
(measured at 1.3 m above ground level; dbh) were recorded. <br>
DOI: 10.6084/m9.figshare.19242193.v1
title: Additional file 2 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 2: The mtDNA sequences results of all the HAPE patients.
DOI: 10.6084/m9.figshare.11377872.v1
title: MOESM1 of Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study

description: Additional file 1. General information and phenotypic data of 278 accessions used in this study.
DOI: 10.6084/m9.figshare.19242193
title: Additional file 2 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 2: The mtDNA sequences results of all the HAPE patients.
DOI: 10.6084/m9.figshare.11377875
title: MOESM2 of PASTMUS: mapping functional elements at single amino acid resolution in human cells

description: Additional file 2: Table S1. Information of CRISPR mediated single site mutagenesis of HBEGF and CSPG4.
DOI: 10.6084/m9.figshare.11377875.v1
title: MOESM2 of PASTMUS: mapping functional elements at single amino acid resolution in human cells

description: Additional file 2: Table S1. Information of CRISPR mediated single site mutagenesis of HBEGF and CSPG4.
DOI: 10.6084/m9.figshare.11377887.v1
title: MOESM3 of Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study

description: Additional file 3. Variance analysis (ANOVA) of 278 soybean varieties in six environments.
DOI: 10.6084/m9.figshare.19242199
title: Additional file 3 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 3: The mtDNA sequences results of all the non-HAPE persons.
DOI: 10.6084/m9.figshare.19242181
title: Additional file 10 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 10: Validation of association between mt3397G, mt3552A genotypes and HAPE susceptibility.
DOI: 10.6084/m9.figshare.11377884.v1
title: MOESM3 of PASTMUS: mapping functional elements at single amino acid resolution in human cells

description: Additional file 3: Table S2. Information of six genes used in PASTMUS.
DOI: 10.6084/m9.figshare.19242211.v1
title: Additional file 6 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 6: Comparison of variant frequencies between HAPE and non-HAPE groups.
DOI: 10.6084/m9.figshare.19242217
title: Additional file 7 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 7: Validation of association between 16172C-16519C genotypes and HAPE susceptibility.
DOI: 10.6084/m9.figshare.19242226.v1
title: Additional file 9 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 9: Basic clinical characteristics of all the validating subjects.
DOI: 10.6084/m9.figshare.11377881.v1
title: MOESM2 of Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study

description: Additional file 2. Statistical analysis of growth periods traits for 278 soybean varieties in six environments.
DOI: 10.6084/m9.figshare.11377899
title: MOESM6 of PASTMUS: mapping functional elements at single amino acid resolution in human cells

description: Additional file 6: Table S6. Essential scores of amino acids from six proteins through PASTMUS.
DOI: 10.6084/m9.figshare.11377899.v1
title: MOESM6 of PASTMUS: mapping functional elements at single amino acid resolution in human cells

description: Additional file 6: Table S6. Essential scores of amino acids from six proteins through PASTMUS.
DOI: 10.6084/m9.figshare.11377902.v1
title: MOESM5 of Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study

description: Additional file5. The raw data and the corresponding accession numbers by SLAF-seq.
DOI: 10.6084/m9.figshare.19242199.v1
title: Additional file 3 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 3: The mtDNA sequences results of all the non-HAPE persons.
DOI: 10.6084/m9.figshare.19242226
title: Additional file 9 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 9: Basic clinical characteristics of all the validating subjects.
DOI: 10.6084/m9.figshare.11377908
title: MOESM6 of Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study

description: Additional file 6. SNPs distribution on each chromosome.
DOI: 10.6084/m9.figshare.11377884
title: MOESM3 of PASTMUS: mapping functional elements at single amino acid resolution in human cells

description: Additional file 3: Table S2. Information of six genes used in PASTMUS.
DOI: 10.6084/m9.figshare.11377908.v1
title: MOESM6 of Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study

description: Additional file 6. SNPs distribution on each chromosome.
DOI: 10.6084/m9.figshare.11377923.v1
title: MOESM9 of Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study

description: Additional file 9. The 291 genes within the LD block (r2 &gt; 0.5) of 37 significant SNPs.
DOI: 10.6084/m9.figshare.19242205.v1
title: Additional file 5 of Association of variants m.T16172C and m.T16519C in whole mtDNA sequences with high altitude pulmonary edema in Han Chinese lowlanders

description: Additional file 5: Number and proportion of molecular consequence in mtDNA.
DOI: 10.6084/m9.figshare.11377920.v1
title: MOESM8 of Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study

description: Additional file 8. Peak SNPs associated with soybean growth periods in at least two environments by CMLM-PCA + K model.
DOI: 10.6084/m9.figshare.11377881
title: MOESM2 of Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study

description: Additional file 2. Statistical analysis of growth periods traits for 278 soybean varieties in six environments.