cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5728573
title: Adiabatic and diabatic signatures of ocean temperature variability - ACCESS-CM2 processing/plotting code and processed data

description: Contains processed data and processing/plotting code for the figures in the article: Holmes, R.M., Sohail, T. and Zika, J.D. (2022): Adiabatic and diabatic signatures of ocean temperature variability, Journal of Climate, https://doi.org/10.1175/JCLI-D-21-0695.1 For more information please see the published article, as well as the github repository where the code is described in more detail: https://github.com/rmholmes/CM2_HCvar/tree/JCLI-D-21-0695
description: This project was supported by Australian Research Council (ARC) through grants DP190101173 and DE21010004
DOI: 10.17632/4trtd6zbfn.1
title: Data for: A model for germanium-silicon equilibrium fractionation in kaolinite

description: Clay thermodynamic calculator based on the model by Blanc et al. (2015) for Ge-kaolinite
CrunchTope input file and database for using the Ge-kaolinite solid-solution model.
DOI: 10.17632/j6ds96cd5g.1
title: mRNA-1273 and BNT162b2 mRNA vaccines have reduced neutralizing activity against the SARS-CoV-2 Omicron variant

description: The SARS-CoV-2 Omicron variant emerged in November 2021 and consists of several mutations within the spike. We used a live virus neutralization assay to examine the neutralizing activity of the Omicron against mRNA vaccine-induced antibody responses. Following 2-4 weeks after primary series of vaccinations, we observed a 30-fold reduction in neutralizing activity against Omicron. Six months after the initial two vaccine doses, sera from naïve vaccinated subjects showed no neutralizing activity against the Omicron. In contrast, COVID-19 recovered individuals six months after receiving the primary series of vaccinations show a 22-fold reduction with majority of the subjects retaining neutralizing antibody responses. In naïve individuals following a booster shot (3rd dose), we observed a 14-fold reduction in neutralizing activity against Omicron and over 90% of subjects show neutralizing activity. These findings show that a 3rd dose is required to provide robust neutralizing antibody responses against the Omicron variant.
DOI: 10.17632/n57vftd353.1
title: Contrasting impacts of herbivore-induction and elevated atmospheric CO2 on silicon defences and consequences for subsequent herbivores

description: The data was collected from glasshouse growth grass, Brachypodium distachyon to elucidate how elevated CO2 and prior feeding by generalist insect Helicoverpa armigera impacts silicon accumulation and its consequences for subsequent cricket (Acheta domesticus) herbivory. We demonstrate that elevated CO2 decreased (silicon) Si accumulation whereas previous herbivory by the global pest Helicoverpa armigera induced Si defences in B. distachyon.
DOI: 10.17632/23wxhgd55p.4
title: Crystallographic orientation data from chloride-induced stress corrosion crack (CISCC) paths in gas tungsten arc welded (GTAW) austenitic stainless steel 304L 

description: This dataset presents crystallographic data collected along chloride-induced stress corrosion cracks (CISCC) in a gas tungsten arc welded (GTAW) austenitic stainless steel (AuSS) 304L.  The experimental setup involved a welded stainless steel 304L coupon of dimensions 105 mm × 18.5 mm × 3 mm, loaded in a 4-point bending fixture with a maximum tensile stress of 380 MPa. The fixtured specimen was immersed in boiling magnesium chloride (MgCl2) solution until a through-crack was observed on the specimen surface after 17 hours of boiling. The cross-section was subsequently polished, and 37 cracks of interest in the heat affected zone (HAZ) and weld zone (WZ) were selected for crystallographic characterization. Scanning electron microscopy (SEM) based electron backscatter diffraction (EBSD) was used to map the grain orientations along and surrounding each crack path. The obtained orientation imaging microscopy (OIM) datasets were post-processed using EDAX OIM V8 proprietary software to generate inverse pole figures (IPF), image quality (IQ) figures, detector signal (SEM) images, and to determine the Taylor factor and Schmid factor of mapped grains. This dataset can be used to understand CISCC crack initiation, propagation, and termination behaviors, as has been reported in the accompanying original research article. This data article providing the raw EBSD OIM datasets and processed images formatted for accessibility in future studies. This comprehensive EBSD dataset can further be used to extract grain boundary misorientation information; benchmark comparative studies of SCC/CISCC in AuSS and other Fe or Ni alloys; and provide critical validation data on grain morphology, misorientation, and crystallography for GTAW and CISCC models.

The data repository contains raw SEM EBSD files and associated image files for 37 CISCC cracks observed in GTAW 304L AuSS. All files for a given crack are organized into a dedicated folder with naming convention “zone #” – where “zone” indicates whether the crack was located in the heat-affected zone (HAZ) or the weld zone (WZ), and “#” is the identification number of the crack. The files in each of these folders are:
•	zone #.oim – Raw EBSD OIM file
•	zone IPF #.tif – inverse pole figure (IPF) image
•	zone IQ #.tif – image quality (IQ) figure
•	zone EBSD-SEM #.tif – SEM EBSD detector signal image of the crack(s)
•	zone HR-SEM #.tif – High resolution SEM image of the crack(s)
In addition, a table DATA IN BRIEF crack behavior summary table. xlsx is also included in the repository to link the raw data and image files to key metadata including crack initiation mode, propagation mode, crack length, and other notable behaviors.
DOI: 10.17632/66jrrgpckz.2
title: Pickup and Delivery Problem with Electric Vehicles and Transfers

description: This data includes 360 instances that found from here and modified to include EVs: https://data.mendeley.com/datasets/w925jygjct/2
There are 10 more instances that generated based on 0.ins found at https://data.mendeley.com/datasets/pywzcgyzrv/2

Details are shared in the paper.
DOI: 10.6084/m9.figshare.19093661
title: Appendix B simulated data from Misuse of Beer–Lambert Law and other calibration curves

description: Simulated data (for the different sigma2) for tha second example in Appendix B
DOI: 10.6084/m9.figshare.19093661.v1
title: Appendix B simulated data from Misuse of Beer–Lambert Law and other calibration curves

description: Simulated data (for the different sigma2) for tha second example in Appendix B
DOI: 10.25919/ezke-0n65
title: Parkes pulsar observations with undefined project IDs for 2021OCTS_11

description: Parkes pulsar observations with undefined project IDs for 2021OCTS. This collection contains observations from project ID PX071.
DOI: 10.5517/ccdc.csd.cc287kjm
title: CCDC 2092640: Experimental Crystal Structure Determination

description: Related Article: Qian-hua Zhou, Ming-yue Pan, Qi He, Qian Tang, Cheuk-fai Chow, Cheng-bin Gong|2022|New J.Chem.|46|1072|doi:10.1039/D1NJ04955K
DOI: 10.25345/c55w01
title: MassIVE MSV000088750 - GNPS - Serotonin biosynthesis and metabolism in C. elegans
title: Representative ms data of tph-1, pah-1, pah-1;tph-1, cat-2 and bas-1 mutant strains along with wildtype C. elegans. ms data of serotonin and 13C-isotope-labeled N-acetyrlserotonin treated wildtype C. elegans. ms/ms data of serotonin treated wildtype C. elegans.
DOI: 10.6084/m9.figshare.14804213
title: A revised Permian–Triassic stratigraphic framework for the northeastern Galilee Basin, Queensland, Australia, and definition of a new Middle–Upper Triassic sedimentary unit

description: The upper Paleozoic–lower Mesozoic strata in the northeastern Galilee Basin are important for their hydrocarbon and groundwater potential; however, despite numerous previous investigations, the nature of this stratigraphic interval remains enigmatic. This study integrates lithostratigraphy, palynology and U–Pb zircon geochronology of well-exposed Permian and Triassic sedimentary rocks and nearby stratigraphic cores from the Hughenden district to determine their maximum depositional ages and then revises the stratigraphy where necessary. The newly defined Galah Tuff Bed was discovered at the top of the Betts Creek beds in Porcupine Gorge and was dated at 251.9 ± 3 Ma. This provides an important age constraint for the Betts Creek beds and is a tie-point for correlations with coeval units in the adjacent Bowen Basin and the Sydney and Gunnedah basins to the southeast. The Galah Tuff Bed is interpreted to correlate with the Yarrabee Tuff in the Bowen Basin. Unconformably overlying the Betts Creek beds is a newly recognised stratigraphic unit, defined herein as the Porcupine Gorge Formation. Detrital zircon maximum depositional ages and palynology indicate a significant depositional hiatus of up to 20 million years between the Betts Creek beds and Porcupine Gorge Formation. The hiatus indicates that the lower part of the Porcupine Gorge Formation is at least upper Middle Triassic, whereas the upper part of the unit extends into the Late Triassic. This age also constrains the overlying Warang Sandstone, which is considerably younger locally than previously reported and is likely diachronous across the northeastern Galilee Basin.KEY POINTSAn integrated lithostratigraphy, palynology and U–Pb detrital zircon geochronology methodology is applied to the Permian–Triassic succession the northeastern Galilee Basin.Two new stratigraphic units were recognised: the upper Permian Galah Tuff Bed (251.9 ± 3 Ma) and the late Middle–Late Triassic Porcupine Gorge Formation (238.7 ± 3 Ma).The Galah Tuff Bed, correlative of the Yarrabee Tuff in the Bowen Basin, is evidence for widespread volcanism in the late Permian.The age of the Porcupine Gorge Formation indicates diachroneity of the Triassic succession in the Galilee Basin, warranting further examination. An integrated lithostratigraphy, palynology and U–Pb detrital zircon geochronology methodology is applied to the Permian–Triassic succession the northeastern Galilee Basin. Two new stratigraphic units were recognised: the upper Permian Galah Tuff Bed (251.9 ± 3 Ma) and the late Middle–Late Triassic Porcupine Gorge Formation (238.7 ± 3 Ma). The Galah Tuff Bed, correlative of the Yarrabee Tuff in the Bowen Basin, is evidence for widespread volcanism in the late Permian. The age of the Porcupine Gorge Formation indicates diachroneity of the Triassic succession in the Galilee Basin, warranting further examination.
DOI: 10.6084/m9.figshare.14804213.v1
title: A revised Permian–Triassic stratigraphic framework for the northeastern Galilee Basin, Queensland, Australia, and definition of a new Middle–Upper Triassic sedimentary unit

description: The upper Paleozoic–lower Mesozoic strata in the northeastern Galilee Basin are important for their hydrocarbon and groundwater potential; however, despite numerous previous investigations, the nature of this stratigraphic interval remains enigmatic. This study integrates lithostratigraphy, palynology and U–Pb zircon geochronology of well-exposed Permian and Triassic sedimentary rocks and nearby stratigraphic cores from the Hughenden district to determine their maximum depositional ages and then revises the stratigraphy where necessary. The newly defined Galah Tuff Bed was discovered at the top of the Betts Creek beds in Porcupine Gorge and was dated at 251.9 ± 3 Ma. This provides an important age constraint for the Betts Creek beds and is a tie-point for correlations with coeval units in the adjacent Bowen Basin and the Sydney and Gunnedah basins to the southeast. The Galah Tuff Bed is interpreted to correlate with the Yarrabee Tuff in the Bowen Basin. Unconformably overlying the Betts Creek beds is a newly recognised stratigraphic unit, defined herein as the Porcupine Gorge Formation. Detrital zircon maximum depositional ages and palynology indicate a significant depositional hiatus of up to 20 million years between the Betts Creek beds and Porcupine Gorge Formation. The hiatus indicates that the lower part of the Porcupine Gorge Formation is at least upper Middle Triassic, whereas the upper part of the unit extends into the Late Triassic. This age also constrains the overlying Warang Sandstone, which is considerably younger locally than previously reported and is likely diachronous across the northeastern Galilee Basin.KEY POINTSAn integrated lithostratigraphy, palynology and U–Pb detrital zircon geochronology methodology is applied to the Permian–Triassic succession the northeastern Galilee Basin.Two new stratigraphic units were recognised: the upper Permian Galah Tuff Bed (251.9 ± 3 Ma) and the late Middle–Late Triassic Porcupine Gorge Formation (238.7 ± 3 Ma).The Galah Tuff Bed, correlative of the Yarrabee Tuff in the Bowen Basin, is evidence for widespread volcanism in the late Permian.The age of the Porcupine Gorge Formation indicates diachroneity of the Triassic succession in the Galilee Basin, warranting further examination. An integrated lithostratigraphy, palynology and U–Pb detrital zircon geochronology methodology is applied to the Permian–Triassic succession the northeastern Galilee Basin. Two new stratigraphic units were recognised: the upper Permian Galah Tuff Bed (251.9 ± 3 Ma) and the late Middle–Late Triassic Porcupine Gorge Formation (238.7 ± 3 Ma). The Galah Tuff Bed, correlative of the Yarrabee Tuff in the Bowen Basin, is evidence for widespread volcanism in the late Permian. The age of the Porcupine Gorge Formation indicates diachroneity of the Triassic succession in the Galilee Basin, warranting further examination.
DOI: 10.6084/m9.figshare.14752640.v1
title: Paleomagnetic testing of the Lachlan Orocline hypothesis: Overprinting of remanence in Paleozoic rocks of the Lachlan Orogen in southeast Australia

description: Paleomagnetic studies in the Lachlan Orogen have indicated rotation of elements within it, but the evidence for rotation is limited and has significant statistical uncertainty. This study presents a detailed paleomagnetic investigation, assisted by X-ray analysis of magnetic mineralogy of middle Cambrian to lower Silurian sedimentary and igneous rocks in Victoria and New South Wales. Four demagnetisation behaviours (types A, B, C and D) have been recognised. Type A is characterised by a single component, resulting in an approximately linear path over the magnetite unblocking temperature range. Type B specimens exhibit slow progressive demagnetisation over a wide temperature range, with clustering of demagnetised directions above the magnetite Curie temperature, indicating hematite. Behaviour C is also characterised by clustering of directions, but this extends over a wider temperature range. Samples with behaviour D show noisy and non-informative demagnetisation, indicating very low magnetic stability. Hysteresis data confirm that samples with behaviour B and C have high coercivities and remain unsaturated above 300 mT. Mineral liberation analysis of selected samples indicates presence of iron oxides, magnetite, titanomagnetite, botryoidal hematite and iron hydroxides. Only three sites yielded specimens with type A primary magnetisation, with a poorly defined pole from the Dookie Volcanics on the central limb of the orocline, which does match a previous result from the same district. Two paleopoles, of type B and C specimens from the rocks in Tabberabbera Zone and the Rockley Volcanics, plot within the confidence limit of poles defining the late Silurian to Early Devonian Australian apparent polar wander path. These poles match other poles representing Devonian overprints around the margins of the Lachlan Orogen that have been interpreted to be the result of alteration mineralisation produced by fluids driven by tectonic compression during events in the Bindian (420–410 Ma) or early Tabberabberan (405–380 Ma) orogenies.KEY POINTSPaleomagnetic techniques have been used to test the rotation within the elements of the Lachlan Orocline in southeast Australia.Results suggest that the original remanence in the rocks is obscured owing to post-deformation overprint.This overprint is widespread in the Lachlan Orogen and is associated with the deformation during Bindian/Tabberabberan orogenic events. Paleomagnetic techniques have been used to test the rotation within the elements of the Lachlan Orocline in southeast Australia. Results suggest that the original remanence in the rocks is obscured owing to post-deformation overprint. This overprint is widespread in the Lachlan Orogen and is associated with the deformation during Bindian/Tabberabberan orogenic events.
DOI: 10.6084/m9.figshare.14752640
title: Paleomagnetic testing of the Lachlan Orocline hypothesis: Overprinting of remanence in Paleozoic rocks of the Lachlan Orogen in southeast Australia

description: Paleomagnetic studies in the Lachlan Orogen have indicated rotation of elements within it, but the evidence for rotation is limited and has significant statistical uncertainty. This study presents a detailed paleomagnetic investigation, assisted by X-ray analysis of magnetic mineralogy of middle Cambrian to lower Silurian sedimentary and igneous rocks in Victoria and New South Wales. Four demagnetisation behaviours (types A, B, C and D) have been recognised. Type A is characterised by a single component, resulting in an approximately linear path over the magnetite unblocking temperature range. Type B specimens exhibit slow progressive demagnetisation over a wide temperature range, with clustering of demagnetised directions above the magnetite Curie temperature, indicating hematite. Behaviour C is also characterised by clustering of directions, but this extends over a wider temperature range. Samples with behaviour D show noisy and non-informative demagnetisation, indicating very low magnetic stability. Hysteresis data confirm that samples with behaviour B and C have high coercivities and remain unsaturated above 300 mT. Mineral liberation analysis of selected samples indicates presence of iron oxides, magnetite, titanomagnetite, botryoidal hematite and iron hydroxides. Only three sites yielded specimens with type A primary magnetisation, with a poorly defined pole from the Dookie Volcanics on the central limb of the orocline, which does match a previous result from the same district. Two paleopoles, of type B and C specimens from the rocks in Tabberabbera Zone and the Rockley Volcanics, plot within the confidence limit of poles defining the late Silurian to Early Devonian Australian apparent polar wander path. These poles match other poles representing Devonian overprints around the margins of the Lachlan Orogen that have been interpreted to be the result of alteration mineralisation produced by fluids driven by tectonic compression during events in the Bindian (420–410 Ma) or early Tabberabberan (405–380 Ma) orogenies.KEY POINTSPaleomagnetic techniques have been used to test the rotation within the elements of the Lachlan Orocline in southeast Australia.Results suggest that the original remanence in the rocks is obscured owing to post-deformation overprint.This overprint is widespread in the Lachlan Orogen and is associated with the deformation during Bindian/Tabberabberan orogenic events. Paleomagnetic techniques have been used to test the rotation within the elements of the Lachlan Orocline in southeast Australia. Results suggest that the original remanence in the rocks is obscured owing to post-deformation overprint. This overprint is widespread in the Lachlan Orogen and is associated with the deformation during Bindian/Tabberabberan orogenic events.
DOI: 10.6084/m9.figshare.16869335
title: response-aligned epochs

description: rule experiment MEG data, aligned to response time.
DOI: 10.6084/m9.figshare.16869335.v3
title: response-aligned epochs

description: rule experiment MEG data, aligned to response time.
DOI: 10.6084/m9.figshare.16869335.v2
title: response-aligned epochs

description: rule experiment MEG data, aligned to response time.
DOI: 10.6084/m9.figshare.14182871
title: onset-aligned MEG data

description: Epochs for MEG data aligned to stimulus onset
DOI: 10.6084/m9.figshare.14182871.v3
title: onset-aligned MEG data

description: Epochs for MEG data aligned to stimulus onset
DOI: 10.6084/m9.figshare.14182871.v2
title: MEG data

description: Epochs for MEG data aligned to stimulus onset
DOI: 10.14457/cu.the.2000.241
title: Physical interaction between polymer melts and solid surface
DOI: 10.14457/cu.the.2000.242
title: Effects of O2 addition on CO2 reforming of methane over Pt/ZrO2 catalysts promoted with Ce
DOI: 10.14457/cu.the.2000.243
title: Inclusion polymerization of vinylchloride monomer via cholic acid host system
DOI: 10.14457/cu.the.2000.244
title: Contact angle of surfactant solutions on precipitated surfactant surfaces
DOI: 10.14457/cu.the.2000.245
title: Foaming of an anionic surfactant in the presence of calcium soap precipitate
DOI: 10.6084/m9.figshare.19093727
title: TableE6_CelliD_ALI_scRNA-seq.xlsx

description: TableE6_CelliD_ALI_scRNA-seq.xlsx
DOI: 10.6084/m9.figshare.19093760
title: TableE13-Pseudo-bulk-of-scRNA-seq-EMT-differential-lncRNA-expression-list.xlsx

description: TableE13-Pseudo-bulk-of-scRNA-seq-EMT-differential-lncRNA-expression-list.xlsx
DOI: 10.6084/m9.figshare.19093727.v1
title: TableE6_CelliD_ALI_scRNA-seq.xlsx

description: TableE6_CelliD_ALI_scRNA-seq.xlsx
DOI: 10.6084/m9.figshare.19093730
title: TableE2-qPCR_primers.xlsx

description: TableE2-qPCR_primers.xlsx
DOI: 10.6084/m9.figshare.19093730.v1
title: TableE2-qPCR_primers.xlsx

description: TableE2-qPCR_primers.xlsx
DOI: 10.6084/m9.figshare.19093733
title: TableE9-NetACT_activity_expression_table.xlsx

description: TableE9-NetACT_activity_expression_table.xlsx
DOI: 10.6084/m9.figshare.19093736
title: TableE3-submerged-Vs-ALI-differential-gene-expression–bulk _RNA-seq.xlsx

description: TableE3-submerged-Vs-ALI-differential-gene-expression–bulk _RNA-seq.xlsx
DOI: 10.6084/m9.figshare.19093733.v1
title: TableE9-NetACT_activity_expression_table.xlsx

description: TableE9-NetACT_activity_expression_table.xlsx
DOI: 10.6084/m9.figshare.19093739
title: TableE11-DGE_cell_based_comparision_scRNA-seq.xlsx

description: TableE11-DGE_cell_based_comparision_scRNA-seq.xlsx
DOI: 10.6084/m9.figshare.19093745
title: TableE7_D0_D1_D5_DGE_all_clusters_scRNA-seq.xlsx

description: TableE7_D0_D1_D5_DGE_all_clusters_scRNA-seq.xlsx
DOI: 10.6084/m9.figshare.19093724
title: TableE4-submerged-Vs-ALI-differential-gene-expression–bulk _RNA-seq_noncode_genes.xlsx

description: TableE4-submerged-Vs-ALI-differential-gene-expression–bulk _RNA-seq_noncode_genes.xlsx
DOI: 10.6084/m9.figshare.19093748
title: TableE14-GWAS-CASC15-locus.xlsx

description: TableE14-GWAS-CASC15-locus.xlsx
DOI: 10.6084/m9.figshare.19093751
title: TableE10-IPA.xlsx

description: TableE10-IPA.xlsx
DOI: 10.6084/m9.figshare.19093724.v1
title: TableE4-submerged-Vs-ALI-differential-gene-expression–bulk _RNA-seq_noncode_genes.xlsx

description: TableE4-submerged-Vs-ALI-differential-gene-expression–bulk _RNA-seq_noncode_genes.xlsx
DOI: 10.6084/m9.figshare.19093742
title: TableE8-PBS_and_EMT_differential_gene_expression–bulk_RNA-seq.xlsx

description: TableE8-PBS_and_EMT_differential_gene_expression–bulk_RNA-seq.xlsx
DOI: 10.6084/m9.figshare.19093751.v1
title: TableE10-IPA.xlsx

description: TableE10-IPA.xlsx
DOI: 10.6084/m9.figshare.19093748.v1
title: TableE14-GWAS-CASC15-locus.xlsx

description: TableE14-GWAS-CASC15-locus.xlsx
DOI: 10.6084/m9.figshare.19093754
title: TableE5_Submerged_DGE_scRNA-seq.xlsx

description: TableE5_Submerged_DGE_scRNA-seq.xlsx
DOI: 10.6084/m9.figshare.19093754.v1
title: TableE5_Submerged_DGE_scRNA-seq.xlsx

description: TableE5_Submerged_DGE_scRNA-seq.xlsx
DOI: 10.6084/m9.figshare.19093757
title: TableE12-Pseudo-bulk-analysis-of-scRNA-seq-EMT-differential-gene-expression-list.xlsx

description: TableE12-Pseudo-bulk-analysis-of-scRNA-seq-EMT-differential-gene-expression-list.xlsx
DOI: 10.6084/m9.figshare.19093757.v1
title: TableE12-Pseudo-bulk-analysis-of-scRNA-seq-EMT-differential-gene-expression-list.xlsx

description: TableE12-Pseudo-bulk-analysis-of-scRNA-seq-EMT-differential-gene-expression-list.xlsx