cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.865033.v1
title: Gaussian Job Archive for C10H14O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.865026
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.865029.v1
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.865022
title: Measuring Impact

description: Talk at TDWG 2013 in Florence
DOI: 10.6084/m9.figshare.865025
title: Gaussian Job Archive for C10H14O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.865026.v1
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.865027.v1
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.865030.v1
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.865018
title: Data from 'Marine Plastic Pollution in Waters around Australia: Characteristics, Concentrations, and Pathways'

description: This fileset provides data described in: Reisser J, Shaw J, Wilcox C, Hardesty BD, Proietti M, et al. (2013) Marine Plastic Pollution in Waters around Australia: Characteristics, Concentrations, and Pathways. PLoS ONE 8(11): e80466. doi:10.1371/journal.pone.0080466 If you have any question/comment, please contact us at jureisser@gmail.com
DOI: 10.6084/m9.figshare.865020
title: Tuning in the Radio Sun

description: Slides from seminar given at the Netherlands Institute for Radio Astronomy (ASTRON) on November 29, 2013. Abstract: Cosmic rays and solar energetic particles may be accelerated to relativistic energies by shock waves in astrophysical plasmas. On the Sun, shocks and particle acceleration are often associated with the eruption of magnetized plasmoids, called coronal mass ejections (CMEs). However, the physical relationship between CMEs and shock particle acceleration is not well understood. In this talk, I will show how extreme ultraviolet, radio and white-light images can be used to study CME-induced shocks and associated phenomena such as large-scale coronal waves. I will also show how LOFAR is giving a new insight into our understanding of electron acceleration in the solar corona.
DOI: 10.6084/m9.figshare.865022.v1
title: Measuring Impact

description: Talk at TDWG 2013 in Florence
DOI: 10.6084/m9.figshare.865025.v1
title: Gaussian Job Archive for C10H14O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.864530
title: Cacajao foraging strategies

description: Gives values (in kg) required to penetrate the sulci and pericarps of fruits from five species of tree from Amazonian Brazil. The pericarps require considerably more force in 3, and a lot less in the other 2. This is significant for the foraging strategies of seed predating primates such as <em>Cacajao, </em>which opens 100's of fruits a day.
DOI: 10.6084/m9.figshare.865020.v1
title: Tuning in the Radio Sun

description: Slides from seminar given at the Netherlands Institute for Radio Astronomy (ASTRON) on November 29, 2013. Abstract: Cosmic rays and solar energetic particles may be accelerated to relativistic energies by shock waves in astrophysical plasmas. On the Sun, shocks and particle acceleration are often associated with the eruption of magnetized plasmoids, called coronal mass ejections (CMEs). However, the physical relationship between CMEs and shock particle acceleration is not well understood. In this talk, I will show how extreme ultraviolet, radio and white-light images can be used to study CME-induced shocks and associated phenomena such as large-scale coronal waves. I will also show how LOFAR is giving a new insight into our understanding of electron acceleration in the solar corona.
DOI: 10.6084/m9.figshare.864530.v1
title: Cacajao foraging strategies

description: Gives values (in kg) required to penetrate the sulci and pericarps of fruits from five species of tree from Amazonian Brazil. The pericarps require considerably more force in 3, and a lot less in the other 2. This is significant for the foraging strategies of seed predating primates such as <em>Cacajao, </em>which opens 100's of fruits a day.
DOI: 10.6084/m9.figshare.865018.v2
title: Data from: Marine Plastic Pollution in Waters around Australia: Characteristics, Concentrations, and Pathways

description: This fileset provides data described in: Reisser J, Shaw J, Wilcox C, Hardesty BD, Proietti M, et al. (2013) Marine Plastic Pollution in Waters around Australia: Characteristics, Concentrations, and Pathways. PLoS ONE 8(11): e80466. doi:10.1371/journal.pone.0080466 If you have any question/comment, please contact us at jureisser@gmail.com
DOI: 10.6084/m9.figshare.864194.v6
title: PLOS ONE Moelans & Holst et al. 2013 Optical Dataset S1

description: <strong>Moelans CB, Holst F, Hellwinkel O, Simon R, van Diest PJ (2013) ESR1Amplification in Breast Cancer by Optimized RNase FISH: Frequent but Low-Level and Heterogeneous. PLoS ONE 8(12): e84189. doi:10.1371/journal.pone.0084189</strong> <strong>Optical Dataset S1 (with RNase) of S1+2</strong> OD S2: http://dx.doi.org/10.6084/m9.figshare.864525 Description for Optical Dataset S1 and S2: Optical dataset illustrating FISH signal appearance containing full size <em>ESR1</em> FISH photos (not all of them representative) of a total of 35 breast cancer cases (Case#1-35) including 24 tumors with increased <em>ESR1</em> copy numbers by FISH (15 ESR1 amplified and 9 <em>ESR1</em> gained, Case#01-#24) and 11 tumors without <em>ESR1</em> copy number increase (Case#25-#35), selected out of a consecutive subset of 90 formalin fixed, paraffin embedded grade 3 breast cancers from the archives of the Department of Pathology in Hamburg that had been previously used in an <em>ESR1</em> FISH mapping study [1]. For all 24 cases with <em>ESR1</em> copy number increase different pictures (Fig.01-19) with (+RNase A: optical dataset S2; “OD2”) and without RNase A treatment (optical dataset S1; “OD1”) are available. FISH data are optical patterns visualized by imaging technology and translated by subjective interpretation into numerical information. Therefore, to support the confirmability especially in regard to reproducible interpretation of the optical FISH “raw data”, we thoroughly photo documented the analyzed cases. The pictures document by three color photographs the <em>ESR1</em> FISH appearance of nuclei with <em>ESR1</em> copy number increase and nuclei without <em>ESR1</em> copy number increase on 4µm full section FFPE tissue slides, showing <em>ESR1</em> signals (green), CEN6 signals (orange) and nuclei chromatin (blue) in 100´ or 63´ magnification. Pictures are subscribed “CNI” for observed gene “copy number increase” and “NO” for “normal” or “no copy number increase”. Gene loci with additional allelic copies (CNI) are marked exemplarily in some cases (white arrows and edges). Especially if nuclei with “CNI” occur in a pattern of mosaic heterogeneity intermingled with nuclei without “CNI” and appear sporadic distributed. Due to intensity variations and the three dimensional distribution of signals not all present gene copies can be shown. To illustrate the distribution of signals within the z-axis, some pictures are taken with two different z-layers (Z-Stack A-D). To illustrate the difference of cases/areas showing <em>ESR1</em> copy number increase (CNI) to cases/areas without <em>ESR1</em> copy number increase, pictures of the 11 cases and other sample areas with clearly normal copy number or “no copy number increase” (“NO”) are shown in addition. 1. Holst F, Stahl PR, Ruiz C, Hellwinkel O, Jehan Z, et al. (2007) Estrogen receptor alpha (ESR1) gene amplification is frequent in breast cancer. Nat Genet 39: 655-660.
DOI: 10.6084/m9.figshare.864525.v3
title: PLOS ONE Moelans & Holst et al. 2013 Optical Dataset S2

description: <strong>Moelans CB, Holst F, Hellwinkel O, Simon R, van Diest PJ (2013) ESR1Amplification in Breast Cancer by Optimized RNase FISH: Frequent but Low-Level and Heterogeneous. PLoS ONE 8(12): e84189. doi:10.1371/journal.pone.0084189</strong> <strong>Optical Dataset S2 (with RNase) of S1+2</strong> OD S1: http://dx.doi.org/10.6084/m9.figshare.864194 Description for Optical Dataset S1 and S2: Optical dataset illustrating FISH signal appearance containing full size <em>ESR1</em> FISH photos (not all of them representative) of a total of 35 breast cancer cases (Case#1-35) including 24 tumors with increased <em>ESR1</em> copy numbers by FISH (15 <em>ESR1</em> amplified and 9 <em>ESR1</em> gained, Case#01-#24) and 11 tumors without <em>ESR1</em> copy number increase (Case#25-#35), selected out of a consecutive subset of 90 formalin fixed, paraffin embedded grade 3 breast cancers from the archives of the Department of Pathology in Hamburg that had been previously used in an <em>ESR1</em> FISH mapping study [1]. For all 24 cases with <em>ESR1</em> copy number increase different pictures (Fig.01-19) with (+RNase A: optical dataset S2; “OD2”) and without RNase A treatment (optical dataset S1; “OD1”) are available. FISH data are optical patterns visualized by imaging technology and translated by subjective interpretation into numerical information. Therefore, to support the confirmability especially in regard to reproducible interpretation of the optical FISH “raw data”, we thoroughly photo documented the analyzed cases. The pictures document by three color photographs the <em>ESR1</em> FISH appearance of nuclei with <em>ESR1</em> copy number increase and nuclei without <em>ESR1</em> copy number increase on 4µm full section FFPE tissue slides, showing ESR1 signals (green), CEN6 signals (orange) and nuclei chromatin (blue) in 100´ or 63´ magnification. Pictures are subscribed “CNI” for observed gene “copy number increase” and “NO” for “normal” or “no copy number increase”. Gene loci with additional allelic copies (CNI) are marked exemplarily in some cases (white arrows and edges). Especially if nuclei with “CNI” occur in a pattern of mosaic heterogeneity intermingled with nuclei without “CNI” and appear sporadic distributed. Due to intensity variations and the three dimensional distribution of signals not all present gene copies can be shown. To illustrate the distribution of signals within the z-axis, some pictures are taken with two different z-layers (Z-Stack A-D). To illustrate the difference of cases/areas showing <em>ESR1</em> copy number increase (CNI) to cases/areas without <em>ESR1</em> copy number increase, pictures of the 11 cases and other sample areas with clearly normal copy number or “no copy number increase” (“NO”) are shown in addition. 1. Holst F, Stahl PR, Ruiz C, Hellwinkel O, Jehan Z, et al. (2007) Estrogen receptor alpha (ESR1) gene amplification is frequent in breast cancer. Nat Genet 39: 655-660.
DOI: 10.6084/m9.figshare.864194.v7
title: ESR1Amplification in Breast Cancer by Optimized RNase FISH: Frequent but Low-Level and Heterogeneous. PLoS ONE 8(12): e84189. Optical Dataset S1

description: <strong>Moelans CB, Holst F, Hellwinkel O, Simon R, van Diest PJ (2013) ESR1Amplification in Breast Cancer by Optimized RNase FISH: Frequent but Low-Level and Heterogeneous. PLoS ONE 8(12): e84189. doi:10.1371/journal.pone.0084189</strong> <strong>Optical Dataset S1 (with RNase) of S1+2</strong> OD S2: http://dx.doi.org/10.6084/m9.figshare.864525 Description for Optical Dataset S1 and S2: Optical dataset illustrating FISH signal appearance containing full size <em>ESR1</em> FISH photos (not all of them representative) of a total of 35 breast cancer cases (Case#1-35) including 24 tumors with increased <em>ESR1</em> copy numbers by FISH (15 ESR1 amplified and 9 <em>ESR1</em> gained, Case#01-#24) and 11 tumors without <em>ESR1</em> copy number increase (Case#25-#35), selected out of a consecutive subset of 90 formalin fixed, paraffin embedded grade 3 breast cancers from the archives of the Department of Pathology in Hamburg that had been previously used in an <em>ESR1</em> FISH mapping study [1]. For all 24 cases with <em>ESR1</em> copy number increase different pictures (Fig.01-19) with (+RNase A: optical dataset S2; “OD2”) and without RNase A treatment (optical dataset S1; “OD1”) are available. FISH data are optical patterns visualized by imaging technology and translated by subjective interpretation into numerical information. Therefore, to support the confirmability especially in regard to reproducible interpretation of the optical FISH “raw data”, we thoroughly photo documented the analyzed cases. The pictures document by three color photographs the <em>ESR1</em> FISH appearance of nuclei with <em>ESR1</em> copy number increase and nuclei without <em>ESR1</em> copy number increase on 4µm full section FFPE tissue slides, showing <em>ESR1</em> signals (green), CEN6 signals (orange) and nuclei chromatin (blue) in 100´ or 63´ magnification. Pictures are subscribed “CNI” for observed gene “copy number increase” and “NO” for “normal” or “no copy number increase”. Gene loci with additional allelic copies (CNI) are marked exemplarily in some cases (white arrows and edges). Especially if nuclei with “CNI” occur in a pattern of mosaic heterogeneity intermingled with nuclei without “CNI” and appear sporadic distributed. Due to intensity variations and the three dimensional distribution of signals not all present gene copies can be shown. To illustrate the distribution of signals within the z-axis, some pictures are taken with two different z-layers (Z-Stack A-D). To illustrate the difference of cases/areas showing <em>ESR1</em> copy number increase (CNI) to cases/areas without <em>ESR1</em> copy number increase, pictures of the 11 cases and other sample areas with clearly normal copy number or “no copy number increase” (“NO”) are shown in addition. 1. Holst F, Stahl PR, Ruiz C, Hellwinkel O, Jehan Z, et al. (2007) Estrogen receptor alpha (ESR1) gene amplification is frequent in breast cancer. Nat Genet 39: 655-660.
DOI: 10.6084/m9.figshare.864525.v4
title: Optical Dataset S2 of PLoS ONE 8(12): e84189. ESR1Amplification in Breast Cancer by Optimized RNase FISH: Frequent but Low-Level and Heterogeneous.

description: <strong>Moelans CB, Holst F, Hellwinkel O, Simon R, van Diest PJ (2013) ESR1Amplification in Breast Cancer by Optimized RNase FISH: Frequent but Low-Level and Heterogeneous. PLoS ONE 8(12): e84189. doi:10.1371/journal.pone.0084189</strong> <strong>Optical Dataset S2 (with RNase) of S1+2</strong> OD S1: http://dx.doi.org/10.6084/m9.figshare.864194 Description for Optical Dataset S1 and S2: Optical dataset illustrating FISH signal appearance containing full size <em>ESR1</em> FISH photos (not all of them representative) of a total of 35 breast cancer cases (Case#1-35) including 24 tumors with increased <em>ESR1</em> copy numbers by FISH (15 <em>ESR1</em> amplified and 9 <em>ESR1</em> gained, Case#01-#24) and 11 tumors without <em>ESR1</em> copy number increase (Case#25-#35), selected out of a consecutive subset of 90 formalin fixed, paraffin embedded grade 3 breast cancers from the archives of the Department of Pathology in Hamburg that had been previously used in an <em>ESR1</em> FISH mapping study [1]. For all 24 cases with <em>ESR1</em> copy number increase different pictures (Fig.01-19) with (+RNase A: optical dataset S2; “OD2”) and without RNase A treatment (optical dataset S1; “OD1”) are available. FISH data are optical patterns visualized by imaging technology and translated by subjective interpretation into numerical information. Therefore, to support the confirmability especially in regard to reproducible interpretation of the optical FISH “raw data”, we thoroughly photo documented the analyzed cases. The pictures document by three color photographs the <em>ESR1</em> FISH appearance of nuclei with <em>ESR1</em> copy number increase and nuclei without <em>ESR1</em> copy number increase on 4µm full section FFPE tissue slides, showing ESR1 signals (green), CEN6 signals (orange) and nuclei chromatin (blue) in 100´ or 63´ magnification. Pictures are subscribed “CNI” for observed gene “copy number increase” and “NO” for “normal” or “no copy number increase”. Gene loci with additional allelic copies (CNI) are marked exemplarily in some cases (white arrows and edges). Especially if nuclei with “CNI” occur in a pattern of mosaic heterogeneity intermingled with nuclei without “CNI” and appear sporadic distributed. Due to intensity variations and the three dimensional distribution of signals not all present gene copies can be shown. To illustrate the distribution of signals within the z-axis, some pictures are taken with two different z-layers (Z-Stack A-D). To illustrate the difference of cases/areas showing <em>ESR1</em> copy number increase (CNI) to cases/areas without <em>ESR1</em> copy number increase, pictures of the 11 cases and other sample areas with clearly normal copy number or “no copy number increase” (“NO”) are shown in addition. 1. Holst F, Stahl PR, Ruiz C, Hellwinkel O, Jehan Z, et al. (2007) Estrogen receptor alpha (ESR1) gene amplification is frequent in breast cancer. Nat Genet 39: 655-660.
DOI: 10.6084/m9.figshare.864525.v5
title: ESR1Amplification in Breast Cancer by Optimized RNase FISH: Frequent but Low-Level and Heterogeneous. PLoS ONE 8(12): e84189. Optical Dataset S2

description: <strong>Moelans CB, Holst F, Hellwinkel O, Simon R, van Diest PJ (2013) ESR1Amplification in Breast Cancer by Optimized RNase FISH: Frequent but Low-Level and Heterogeneous. PLoS ONE 8(12): e84189. doi:10.1371/journal.pone.0084189</strong> <strong>Optical Dataset S2 (with RNase) of S1+2</strong> OD S1: http://dx.doi.org/10.6084/m9.figshare.864194 Description for Optical Dataset S1 and S2: Optical dataset illustrating FISH signal appearance containing full size <em>ESR1</em> FISH photos (not all of them representative) of a total of 35 breast cancer cases (Case#1-35) including 24 tumors with increased <em>ESR1</em> copy numbers by FISH (15 <em>ESR1</em> amplified and 9 <em>ESR1</em> gained, Case#01-#24) and 11 tumors without <em>ESR1</em> copy number increase (Case#25-#35), selected out of a consecutive subset of 90 formalin fixed, paraffin embedded grade 3 breast cancers from the archives of the Department of Pathology in Hamburg that had been previously used in an <em>ESR1</em> FISH mapping study [1]. For all 24 cases with <em>ESR1</em> copy number increase different pictures (Fig.01-19) with (+RNase A: optical dataset S2; “OD2”) and without RNase A treatment (optical dataset S1; “OD1”) are available. FISH data are optical patterns visualized by imaging technology and translated by subjective interpretation into numerical information. Therefore, to support the confirmability especially in regard to reproducible interpretation of the optical FISH “raw data”, we thoroughly photo documented the analyzed cases. The pictures document by three color photographs the <em>ESR1</em> FISH appearance of nuclei with <em>ESR1</em> copy number increase and nuclei without <em>ESR1</em> copy number increase on 4µm full section FFPE tissue slides, showing ESR1 signals (green), CEN6 signals (orange) and nuclei chromatin (blue) in 100´ or 63´ magnification. Pictures are subscribed “CNI” for observed gene “copy number increase” and “NO” for “normal” or “no copy number increase”. Gene loci with additional allelic copies (CNI) are marked exemplarily in some cases (white arrows and edges). Especially if nuclei with “CNI” occur in a pattern of mosaic heterogeneity intermingled with nuclei without “CNI” and appear sporadic distributed. Due to intensity variations and the three dimensional distribution of signals not all present gene copies can be shown. To illustrate the distribution of signals within the z-axis, some pictures are taken with two different z-layers (Z-Stack A-D). To illustrate the difference of cases/areas showing <em>ESR1</em> copy number increase (CNI) to cases/areas without <em>ESR1</em> copy number increase, pictures of the 11 cases and other sample areas with clearly normal copy number or “no copy number increase” (“NO”) are shown in addition. 1. Holst F, Stahl PR, Ruiz C, Hellwinkel O, Jehan Z, et al. (2007) Estrogen receptor alpha (ESR1) gene amplification is frequent in breast cancer. Nat Genet 39: 655-660.
DOI: 10.6084/m9.figshare.863785
title: Data on the presence of chromosomally integrated human herpes virus 6 (ciHHV-6) and human immunodeficiency virus (HIV) disease progression and severity

description: Data on ciHHV-6 presence and HIV disease progression in 439 patients at the Infectious Diseases Clinic at Strong Memorial Hospital in Rochester, NY: PID: Subject identification<br>Studydob: Subject date of birth<br>Enrolldate: Subject date of enrollment<br>Gender: Subject gender<br>Med_provider: Subject’s HIV medical provider<br>Race: Subject self-identified race<br>Ethnicity: Subject self-identified ethnicity<br>HIV_Dx_Date: Subject’s date of HIV diagnosis<br>AIDS_Dx_Date: Patient’s date of AIDS diagnosis<br>Last_VL_Date: Subject’s date of most recent viral load<br>Last_VL: Subject’s most recent viral load<br>Last_CD4_Date: Subject’s date of most recent CD4+ T-cell count<br>Last_CD4: Subject’s most recent CD4+ T-cell count<br>ART Naïve: If subject is naïve to antiretroviral therapy – ‘yes’<br>CIHHV6Run2: Subject positive for qualitative PCR results – ‘1’<br>QuantPCR: Subject positive for quantitative PCR results – ‘1’ Extraction tool used to collect data
DOI: 10.6084/m9.figshare.863782
title: Gaussian Job Archive for C18H23NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.863782.v1
title: Gaussian Job Archive for C18H23NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.863785.v1
title: Data on the presence of chromosomally integrated human herpes virus 6 (ciHHV-6) and human immunodeficiency virus (HIV) disease progression and severity

description: Data on ciHHV-6 presence and HIV disease progression in 439 patients at the Infectious Diseases Clinic at Strong Memorial Hospital in Rochester, NY: PID: Subject identification<br>Studydob: Subject date of birth<br>Enrolldate: Subject date of enrollment<br>Gender: Subject gender<br>Med_provider: Subject’s HIV medical provider<br>Race: Subject self-identified race<br>Ethnicity: Subject self-identified ethnicity<br>HIV_Dx_Date: Subject’s date of HIV diagnosis<br>AIDS_Dx_Date: Patient’s date of AIDS diagnosis<br>Last_VL_Date: Subject’s date of most recent viral load<br>Last_VL: Subject’s most recent viral load<br>Last_CD4_Date: Subject’s date of most recent CD4+ T-cell count<br>Last_CD4: Subject’s most recent CD4+ T-cell count<br>ART Naïve: If subject is naïve to antiretroviral therapy – ‘yes’<br>CIHHV6Run2: Subject positive for qualitative PCR results – ‘1’<br>QuantPCR: Subject positive for quantitative PCR results – ‘1’ Extraction tool used to collect data
DOI: 10.6084/m9.figshare.862983
title: 2013 Surface - South Building CLDQ

description: This model shows the excavated surface of the South Butler Building at the Cleveland Lloyd Dinosaur Quarry as of June, 2013. The model was produced from 225 photographs taken with a Nikon D3100 SLR camera. Images were processed into a mesh with Agisoft PhotoScan Pro, producing a model containing 187,563 faces and 94,539 vertices.