cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2qscfb
title: CCDC 2525862: Experimental Crystal Structure Determination

description: Related Article: Duncan W Bruce, Stephen J. Cowling, Jesis Gurung, Caitlin Baptista, Christine Collier, Adam Braidley, Oliver Lewis, Jade Coleman, Adrian C. Whitwood|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.970b3
title: Data from: The genetic structure of a Venturia inaequalis population in a heterogeneous host population composed of different Malus species

description: Background: Adaptation, which induces differentiation between populations
 in relation to environmental conditions, can initiate divergence. The
 balance between gene flow and selection determines the maintenance of such
 a structure in sympatry. Studying these two antagonistic forces in plant
 pathogens is made possible because of the high ability of pathogens to
 disperse and of the strong selective pressures exerted by their hosts. In
 this article, we analysed the genetic structure of the population of the
 apple scab fungus, Venturia inaequalis, in a heterogeneous environment
 composed of various Malus species. Inferences were drawn from
 microsatellite and AFLP data obtained from 114 strains sampled in a single
 orchard on nine different Malus species to determine the forces that shape
 the genetic structure of the pathogen. Results: Using clustering methods,
 we first identified two specialist subpopulations: (i) a virulent
 subpopulation sampled on Malus trees carrying the Rvi6 resistance gene;
 and (ii) an avirulent subpopulation infecting only Malus trees that did
 not carry this resistance gene. A genome scan of loci on these two
 subpopulations did not detect any locus under selection. Additionally, we
 did not detect any other particular substructure linked to different
 hosts. However, an isolation-by-distance (IBD) pattern at the orchard
 scale revealed free gene flow within each subpopulation. Conclusions: Our
 work shows a rare example of a very strong effect of a resistance gene on
 pathogen populations. Despite the high diversity of Malus hosts, the
 presence of Rvi6 seems sufficient to explain the observed genetic
 structure. Moreover, detection of an IBD pattern at the orchard scale
 revealed a very low average dispersal distance that is particularly
 significant for epidemiologists and landscape managers for the design of
 scab control strategies.
description: dataset for all 114
 strainsThe whole dataset is
 available for download(114 strains). Note that the observed 106 unique
 haplotypes (i.e. the clone-corrected dataset used for all the analyses;
 see the Methods section) are labeled with a "0". Excluded clones
 are labeled with a "1".Leroy_et_al_BMCEvolBiol_Dryad_114strains_106afterclone-correction.xlsx
DOI: 10.5517/ccdc.csd.cc2qsh56
title: CCDC 2525978: Experimental Crystal Structure Determination

description: Related Article: J. T. Mague, J. P. Donahue|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2qsjdg
title: CCDC 2526016: Experimental Crystal Structure Determination

description: Related Article: Peter Wipf|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.nm341
title: Data from: Genetic consequences of a century of protection: serial founder events and survival of the little spotted kiwi (Apteryx owenii)

description: We present the outcome of a century of post-bottleneck isolation of a
 long-lived species, the little spotted kiwi (Apteryx owenii, LSK) and
 demonstrate that profound genetic consequences can result from protecting
 few individuals in isolation. LSK were saved from extinction by
 translocation of five birds from South Island, New Zealand to Kapiti
 Island 100 years ago. The Kapiti population now numbers some 1200 birds
 and provides founders for new populations. We used 15 microsatellite loci
 to compare genetic variation among Kapiti LSK and the populations of Red
 Mercury, Tiritiri Matangi and Long Islands that were founded with birds
 from Kapiti. Two LSK native to D'Urville Island were also placed on
 Long Island. We found extremely low genetic variation and signatures of
 acute and recent genetic bottleneck effects in all four populations,
 indicating that LSK have survived multiple genetic bottlenecks. The Long
 Island population appears to have arisen from a single mating pair from
 Kapiti, suggesting there is no genetic contribution from D'Urville
 birds among extant LSK. The Ne/NC ratio of Kapiti Island LSK (0.03) is
 exceptionally low for terrestrial vertebrates and suggests that genetic
 diversity might still be eroding in this population, despite its large
 census size.
description: Apteryx
 owenii_microsatellite_genotypes_April 2013
DOI: 10.5517/ccdc.csd.cc2qsk03
title: CCDC 2526035: Experimental Crystal Structure Determination

description: Related Article: J. T. Mague, J. P. Donahue|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2qsk36
title: CCDC 2526038: Experimental Crystal Structure Determination

description: Related Article: Ting-Ting Song|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.9v44s
title: Data from: Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae)

description: PREMISE OF THE STUDY: Yucca species are ideal candidates for the study of
 coevolution due to the obligate mutualism they form with yucca moth
 pollinators (genera Tegeticula and Parategeticula). Yuccas are not the
 only species to exhibit a mutualism with yucca moths; the genus
 Hesperoyucca is pollinated by the California yucca moth (Tegeticula
 maculata). Relationships among yuccas, Hesperoyucca, and other members of
 subfamily Agavoideae are necessary to understand the evolution of this
 unique pollination syndrome. Here, we investigate evolutionary
 relationships of yuccas and closely related genera looking at the timing
 and origin of yucca moth pollination. METHODS: In this study, we sequenced
 the chloroplast genomes of 20 species in the subfamily Agavoideae
 (Asparagaceae) and three confamilial outgroup taxa to resolve intergeneric
 phylogenetic relationships of Agavoideae. We estimated divergence times
 using protein-coding genes from 67 chloroplast genomes sampled across
 monocots to determine the timing of the yucca moth pollination origin. KEY
 RESULTS: We confidently resolved intergeneric relationships in Agavoideae,
 demonstrating the origin of the yucca–yucca moth mutualism on two distinct
 lineages that diverged 27 million years ago. Comparisons of Yucca and
 Hesperoyucca divergence time to those of yucca moths (Tegeticula and
 Parategeticula, Prodoxidae) indicate overlapping ages for the origin of
 pollinating behavior in the moths and pollination by yucca moths in the
 two plant lineages. CONCLUSION: Whereas pollinating yucca moths have been
 shown to have a single origin within the Prodoxidae, there were
 independent acquisitions of active pollination on lineages leading to
 Yucca and Hesperoyucca within the Agavoideae.
description: McKainetal_2016_Agavoideae_Convergergent_EvolutionSee README.Dryad_Agavoideae_Convergergent_Evolution.tar.gz
DOI: 10.5517/ccdc.csd.cc2qsk47
title: CCDC 2526039: Experimental Crystal Structure Determination

description: Related Article: Ting-Ting Song|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2qsk58
title: CCDC 2526040: Experimental Crystal Structure Determination

description: Related Article: Ting-Ting Song|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2qsk69
title: CCDC 2526041: Experimental Crystal Structure Determination

description: Related Article: Ting-Ting Song|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.gdf9d7
title: Occurrence Download

description: A dataset containing 361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Philadelphus mexicanus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 361 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001059-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.7d5g4
title: Data from: Agricultural intensification and the functional capacity of soil microbes on smallholder African farms

description: 1. Fertilization may impact ecosystem processes that sustain agriculture,
 such as nutrient cycling, by altering the composition of soil microbial
 communities that regulate such processes. These processes are crucial to
 low-input, smallholder tropical agriculture, which supports 900 million of
 the world's poorest people. Yet little is known about how efforts to
 increase crop yield on such farms will affect the capacity of soil
 microbial communities to carry out ecosystem processes. 2. We studied the
 diversity and functional capacity of microbial communities on smallholder
 farms in western Kenya. We measured functional capacity as the abundance
 of functional genes involved in several components of nutrient cycling as
 well as catabolism of multiple carbon substrates; taxonomic diversity was
 measured using metagenomic sequencing. Diversity and functional capacity
 were measured on short-term, experimental mineral fertilizer addition
 plots and on actively managed farms that have maintained for at least
 seven years a management strategy of low mineral fertilization, high
 mineral fertilization, or high fertilization combined with legume
 rotations. 3. Soil bacterial diversity decreased with mineral fertilizer
 addition, with a community shift towards taxa that thrive in high-resource
 conditions. This taxonomic response did not correspond with decreased
 microbial functional capacity. Instead, functional capacity was increased,
 along with yields, when fertilizers were combined with legume rotations
 that add organic matter to soil. 4. Policy implications. Mineral
 fertilizer use is associated with lower soil microbial diversity on
 smallholder farms, but not associated with changes in microbial functional
 capacity. Functional capacity is highest, along with yields, when mineral
 fertilizers are paired with legume rotations. Our findings suggest that
 this type of agroforestry can be an important strategy for maintaining the
 long-term functional capacity of soil microbes as well as increasing crop
 yields on smallholder farms. These observations support proposals to
 achieve long-term food production targets in sub-Saharan Africa by
 combining mineral fertilizers with organic inputs.
description: GeoChip 4.0
 DataLog-transformed results
 for all GeoChip functional genes.Wood all 0802 Therm5 10 am MR
 cut 1.txtMiSeq
 MappingMapping file for MiSeq
 runmapping_corrected_corrected.txtCatabolic Response ProfilingCatabolic response data for multifunctionality analysis of catabolic capacity.multifunc.csvMiSeq BarcodesBarcode/index file for MiSeq dataUndetermined_S0_L001_I1_001.fastqMiSeq Forward ReadsForward read sequence dataUndetermined_S0_L001_R1_001.fastq.gz
DOI: 10.5061/dryad.6pt8g
title: Data from: A simple explanation for the evolution of complex song syntax in Bengalese finches

description: The songs of Bengalese finches (Lonchura striata var. domestica) have
 complex syntax and provide an opportunity to investigate how complex
 sequential behavior emerges via the evolutionary process. In the present
 study, we suggest that a simple mechanism, i.e., many-to-one mapping from
 internal states onto syllables, may underlie the emergence of apparent
 complex syllable sequences that have higher-order history dependencies. We
 analyzed the songs of Bengalese finches and of their wild ancestor, the
 white-rumped munia (Lonchura striata), whose songs are more stereotypical
 and simpler compared to those of Bengalese finches. The many-to-one
 mapping mechanism sufficiently accounted for the differences in the
 complexity of song syllable sequences of these two strains.
description: Audio data of Bengalese
 finch songsThis file contains the
 sound (wav) files of the Bengalese finch songs we analyzed. Each directory
 labeled BFXX contains songs from one bird where XX indicates the bird
 ID.BF.zipAudio data of white-rumped munia songsThis file contains the sound (wav) files of the white-rumped munia songs we analyzed. Each directory labeled WMXX contains songs from one bird where XX indicates the bird ID.WM.zip
DOI: 10.5061/dryad.624gb
title: Data from: Correlational selection does not explain the evolution of a behavioural syndrome

description: Correlated suites of behaviours, or behavioural syndromes, appear to be
 widespread, and yet few studies have explored how they arise and are
 maintained. One possibility holds that correlational selection can
 generate and maintain behavioural syndrome if certain behavioural
 combinations enjoy greater fitness than other combinations. Here we test
 this correlational selection hypothesis by comparing behavioural syndrome
 structure with a multivariate fitness surface based on reproductive
 success of male water striders. We measured the structure of a behavioural
 syndrome including dispersal ability, exploration behaviour, latency to
 remount and sex recognition sensitivity in males. We then measured the
 relationship between these behaviours and mating success in a range of sex
 ratio environments. Despite the presence of some significant correlational
 selection, behavioural syndrome structure was not associated with
 correlational selection on behaviours. Although we cannot conclusively
 reject the correlational selection hypothesis, our evidence suggests that
 correlational selection and resulting linkage disequilibrium might not be
 responsible for maintaining the strong correlations between behaviours.
 Instead, we suggest alternative ways in which this behavioural syndrome
 may have arisen and outline the need for physiological and quantitative
 genetic tests of these suggestions.
description: original
 dataExperimental data set.
 ID (male ID); Group (experimental sub-groups); DD (dispersal ability); RR
 (latency to remount); SS (sex recognition sensicitiy); EE (exploration
 ability); m1-m4 (eigenvectors); res (mating success residuals); ratio (sex
 ratio environments)"Han_Brooks_2013_data.xlsx
DOI: 10.5061/dryad.2mk7k
title: Data from: Climate-associated tundra thaw pond formation and range expansion of boreal zooplankton predators

description: Most of the freshwater component of the Earth's surface is composed
 of shallow tundra ponds. These high latitude ecosystems have been exposed
 to a variety of abiotic disturbances associated with recent environmental
 change. However, the biological significance of these changes remains
 poorly understood. Here, we characterize the abiotic disturbance to the
 shallow tundra ponds of northwest Alaska. We used historical aerial
 imagery to determine that up to 53% of the sampled ponds have formed
 during the recent warmer decades (since the 1970s). We discovered that two
 top predator species (phantom midges of the genus Chaoborus) of the
 freshwater zooplankton have recently undergone range expansion, forming
 widespread (a scale of hundreds of km) stable tundra populations. We
 assessed the population persistence of these boreal predators by
 longitudinal sampling over 14 yr. Recent thaw ponds had significantly
 dissimilar zooplankton communities to communities of ponds that formed
 before 1950. Both predator and herbivore species differed by age of pond.
 Younger pond ages and warmer surface temperatures were the significant
 predictors of the presence of temperate Chaoborus americanus in tundra
 ponds. Ponds containing tundra populations of C. americanus and C. cf.
 flavicans were associated with recent formation (83–90%). Recent ponds in
 river valleys appeared more important than recent ponds near roads as
 colonization corridors for C. americanus. Only 24% of the tundra keystone
 predator, Heterocope septentrionalis, populations were from recent ponds.
 Our results suggest that climate-associated disturbance can lead to a
 widespread stable range expansion of boreal species despite the
 propinquity of older ponds with top-down control exerted by an endemic
 keystone predator.
description: Seward Peninsula Pond
 locations, physical data and zooplankton
 presence/absenceThe file contains data
 for 345 persistent ponds on the Seward Peninsula, Alaska. Pond locations
 (Lat.,Long.), physical parameters (including pond areas and perimeters),
 and zooplankton presence/absences from the most recent sampling. Recently
 formed ponds are flagged as a "1" using the old_new
 variable.Taylor_et_al_2015_Ecography_dyrad.csv
DOI: 10.5061/dryad.6pv0v
title: Data from: Endophytic-insect parasitic fungi translocate nitrogen directly from insects to plants

description: Most plants obtain nitrogen through nitrogen-fixing bacteria and microbial
 decomposition of plant and animal material. Most vascular plants are able
 to form close symbiotic associations with endophytic fungi. Metarhizium is
 a common plant endophyte found in a large number of ecosystems. This
 abundant soil fungus is also a pathogen to a large number of insects, a
 source of nitrogen. It is possible that endophytic capability and insect
 pathogenicity of Metarhizium are coupled to provide an active method of
 nitrogen transfer to plant hosts via fungal mycelia. In this study we used
 soil microcosms to test the ability of M. robertsii to translocate
 insect-derived nitrogen to plants. Insects were injected with 15N-labelled
 nitrogen, and we tracked the incorporation of 15N into amino acids in two
 plant species, haricot bean (Phaseolus vulgaris) and switchgrass (Panicum
 virgatum), in the presence of M. robertsii. These findings are evidence
 that active nitrogen acquisition by plants in this tripartite interaction
 may play a larger role in soil nitrogen cycling than previously thought.
description: raw data plant insect
 met exp.Atom% 15N present in
 plant samples analyzed by NOI-5 emissions spectrophotometer. Each day
 represents the treatment run in triplicate with a minimum of 2 data points
 obtained per replicate. Mass spec provided are the molecular ion/molecular
 ion + 1 ratios obtained through liquid chromatography/mass spec
 analysis.raw 15N percent values and mass
 spec.xlsx
DOI: 10.5061/dryad.77gj270
title: Data from: Familiarity mediates equitable social associations in guppies

description: Several fish species are characterized by social systems in which
 individuals prefer to interact with specific group mates. However, there
 is no clear evidence that such associations are equitable, i.e. they are
 mutual between individuals. We addressed this issue in the guppy (Poecilia
 reticulata), a species in which social network analyses have evidenced
 non-random social associations between individuals. We measured the mutual
 preference in pairs of guppies that previously familiarized in groups of
 either two or six individuals. To estimate the equitability of social
 associations, we first tested the preference of one fish for a familiar
 stimulus fish over an unfamiliar stimulus fish, and then, we similarly
 tested the preference of the other fish. Irrespective of the group size
 experienced during familiarization (two or six individuals), we found a
 within-pair consistency in the preference for the familiar fish,
 indicating that guppies developed social associations that are mutual
 between individuals. In a further condition, we tested pairs of unfamiliar
 individuals to assess the role of familiarity in equitable social
 associations. We found that equitable social associations did not develop
 in absence of previous familiarization and were not based on spontaneous
 preferences or phenotypic assortment. Our results demonstrate that
 familiarity mediates the development of equitable social associations in
 guppies and suggest that this behavior may be more widespread than
 previously considered.
description: Cattelan et al
 2018_equitability_guppiesThe dataset contains the
 social preference of each subject for a familiar stimulus fish over an
 unfamiliar stimulus fish. Previously the fish were subjected to three
 familiarization conditions. The column "treat" includes the
 two-individual familiarization condition ("pair"), the
 six-individual familiarization condition ("group") and the
 unfamiliar condition ("unf").