cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/cks86467mv.1
title:  Alignments used for phylogenetic analyses in the article - Lightella neohaematopini: a new lineage of highly reduced endosymbionts coevolving with chipmunk lice of the genus Neohaematopinus

description: Alignments used for phylogenetic analyses in the article - Lightella neohaematopini: a new lineage of highly reduced endosymbionts coevolving with chipmunk lice of the genus Neohaematopinus

1. Phylogenetic matrix - concatenated matrix of 14 ortholog sequences (AA) extracted from representative set of available proteomes for each major lineage of Enterobacteriales (analyzed by PhyML, MrBayes and PhyloBayes) in a fasta format
2. Coevolutionary matrix - concatenated matrix of 5 ortholog sequences (AA) extracted from 12 assemblies of L. neohaematopini (analyzed by PhyML and MrBayes) in a fasta format
3. Neisseriales matrix -  concatenated matrix of 30 ortholog sequences (AA) extracted from representative set of available proteomes for Neisseriales (analyzed by PhyML and MrBayes) in a fasta format
4. Host matrices - individual matrices for 1,107 nuclear loci from Bell et al. 2021 (analyzed by IQ-TREE) in a fasta format

Detailed description of used methods can be found in the Materials and Methods section.
DOI: 10.17632/fvnbh855cr.3
title: Quantifying Lake-Aquifer Water Exchange: The Case of Lake Urmia, Iran

description: The supplementary data file including time-series of in-situ (ground) and remotely-sensed monthly data of Lake Urmia located in northwest of Iran. In-situ datasets including precipitation over lake, surface inflow into lake, and groundwater level in 14 adjacent aquifers to the lake. Remotely-sensed data sets including evaporation from the lake and water extend area of the lake.
DOI: 10.17632/hv9dk5c4c4.1
title: Immunoblotting analysis and ELISA for p53 knockdown verification in HaCaT keratinocytes

description: Here we present experimental data of blotting and immunosorbent analysis of wild type (WT) HaCaT and p53 knockdown HaCaT cells. Provided results were obtained to confirm the knockdown of p53 in HaCaT keratinocytes. 
HaCaT cells were obtained from Bank of DKFZ, Heidelberg and cultured in DMEM/F:12 medium (1:1, Gibco, USA) supplemented with 1% GlutaMAX (Thermo Fisher Scientific, USA), penicillin/streptomycin (100 UI/mL and 100 μg/mL, Gibco, USA) and 10% v/v fetal bovine serum (Gibco, USA). Cells were grown in 60 mm Petri dishes (Corning, USA) and harvested by trypsinization. The culture medium was replaced by fresh every other day.
The knockdown was performed using shRNA designed to knockdown TP53 expression. To perform the knockdown, we applied lentiviral particles (LVPs) encoding anti-TP53 shRNA pLKO-p53-shRNA (Addgene, #25637). To assemble the LVPs, the pLKO-p53-shRNA was delivered in HEK293T cells using PEI transfection. The condition medium was collected 48-72 hours post transfection and purified from cell debris via centrifugation (45 min at 4500g and 4° C).  HaCaT cells were grown until 70% confluence, then the cultivation medium was replaced with condition medium containing LPVs for 1.5 hours. The cells were cultured for 4 days under standard conditions, afterwards the medium was replaced with puromycin-containing medium (1 µg/ml). As a control, we used HaCaT cells transduced with lego-ig2 (Addgene, #27341), which does not contain the puromycin resistance gene. After 10 days of puromycin selection 100% of control cells were dead. The obtained cells were used for further experiments. 

For the immunosorbent assay, the cells were seeded at density of 1×104 cells per well 48 hours prior analysis. ELISA was performed via Abcam’s assay (ab205713) for semi-quantitative p53 determination in accordance with the supplier's manual. 
For blotting analysis, the cells were grown until confluence of 70% at 60 mm Petri dishes under standard conditions. The cells were rinsed with DPBS and lysed in RIPA buffer (150 mM NaCl, 1% Triton X-100, 0.5% sodium deoxycholate, 0.1% SDS, 50 mM Tris, pH 8.0). Then 4x Laemmli buffer was mixed with the samples to 1x followed by 10 min incubation at 90C. The proteins were separated in 8% sodium SDS-PAGE and transfered to PVDF membrane. The immunodetection was performed with antibodies to human p53 (clone BP-53-12, PrimeBioMed, Russia) and β-actin (Bio-rad, VMA00048). 
Alkaline phosphatase (AP)-conjugated secondary antibodies (Bio-rad, STAR108A) were used for the immunodetection. The chemiluminescence was detected with DNR LumiBis Gel Imaging System 3.2. The images were obtained using GelCapture software. 
Here we deposit the immunoblotting results confirming decrease of p53 level in p53 knockdown HaCaT cells. The provided data includes the results of 3 independent experiments. Also, we present the raw data obtained from the ELISA assay.
DOI: 10.6084/m9.figshare.19375019.v1
title: Characteristics of strong ground motions from four MS ≥ 5.0 earthquakes in the 2021 Yangbi, southwest China, seismic sequence

description: Ground motion intensity measures of Yangbi Ms6.4 earthquake sequence
DOI: 10.6084/m9.figshare.19375040
title: Figure5data.sav

description: (1)LL;L-value under dipole magnetic field(2)alpha11,alpha22,alpha33,alpha44: Eequatorial picth angle at μ=1.1，K=3,4,5,6, respectively.(3)E11,E22,E33,E44: electron energy at μ=1.1，K=3,4,5,6, respectively.
DOI: 10.6084/m9.figshare.19375040.v1
title: Figure5data.sav

description: (1)LL;L-value under dipole magnetic field(2)alpha11,alpha22,alpha33,alpha44: Eequatorial picth angle at μ=1.1，K=3,4,5,6, respectively.(3)E11,E22,E33,E44: electron energy at μ=1.1，K=3,4,5,6, respectively.
DOI: 10.6084/m9.figshare.19374383
title: Fungal diversity and metallotolerant fungi associated with different coal overburden strata of Tikak colliery, Assam

description: <b>Graphical Abstract: </b>Cultivable fungal diversity of coal mine overburden strata of Tikak colliery, Margherita, Assam, India. It shows a photograph of the coal mining site as the background, fungal colony morphology in the upper section, and a graphical representation of heavy metal tolerance of the isolates at different concentrations of As, Cd, Cr, Cu, and Ni in the lower section.<b><b><br></b>Supplementary data S1</b>. NCBI-BLAST results of the nrDNA ITS sequences against the closest Type specimens.<br><b>Supplementary data S2</b>. Characterization of colony and cellular morphology of the fungal isolates obtained from different coal overburden samples of Tikak colliery, Margherita, Assam <br><b>Supplementary data S3</b>.<b> </b>Photo plates of fungal colonies
DOI: 10.6084/m9.figshare.19374383.v1
title: Fungal diversity and metallotolerant fungi associated with different coal overburden strata of Tikak colliery, Assam

description: <b>Graphical Abstract: </b>Cultivable fungal diversity of coal mine overburden strata of Tikak colliery, Margherita, Assam, India. It shows a photograph of the coal mining site as the background, fungal colony morphology in the upper section, and a graphical representation of heavy metal tolerance of the isolates at different concentrations of As, Cd, Cr, Cu, and Ni in the lower section.<b><b><br></b>Supplementary data S1</b>. NCBI-BLAST results of the nrDNA ITS sequences against the closest Type specimens.<br><b>Supplementary data S2</b>. Characterization of colony and cellular morphology of the fungal isolates obtained from different coal overburden samples of Tikak colliery, Margherita, Assam <br><b>Supplementary data S3</b>.<b> </b>Photo plates of fungal colonies
DOI: 10.6084/m9.figshare.19375063
title: Supplementary Data 2 from Small-molecule autocatalytic networks are universal metabolic fossils

description: Curated oxygen-independent global prokaryotic network annotated with small-molecule catalysis.
DOI: 10.6084/m9.figshare.19375063.v1
title: Supplementary Data 2 from Small-molecule autocatalytic networks are universal metabolic fossils

description: Curated oxygen-independent global prokaryotic network annotated with small-molecule catalysis.
DOI: 10.6084/m9.figshare.19375066
title: Supplementary Data 4 from Small-molecule autocatalytic networks are universal metabolic fossils

description: maxRAFs obtained for all 6683 prokaryotes (rich medium). Each file is named after the KEGG genome code, and contains the KEGG IDs for reactions in the maxRAF.
DOI: 10.6084/m9.figshare.19375069
title: Supplementary Data 3 from Small-molecule autocatalytic networks are universal metabolic fossils

description: Food sets used in the search of autocatalytic networks.
DOI: 10.6084/m9.figshare.19375069.v1
title: Supplementary Data 3 from Small-molecule autocatalytic networks are universal metabolic fossils

description: Food sets used in the search of autocatalytic networks.
DOI: 10.6084/m9.figshare.19375066.v1
title: Supplementary Data 4 from Small-molecule autocatalytic networks are universal metabolic fossils

description: maxRAFs obtained for all 6683 prokaryotes (rich medium). Each file is named after the KEGG genome code, and contains the KEGG IDs for reactions in the maxRAF.
DOI: 10.6084/m9.figshare.19375075.v1
title: Supplementary Data 5 from Small-molecule autocatalytic networks are universal metabolic fossils

description: maxRAFs obtained for all 6683 prokaryotes with NAD only. Each file is named after the KEGG genome code, and contains the KEGG IDs for reactions in the maxRAF.
DOI: 10.6084/m9.figshare.19375072
title: Supplementary Data 1 from Small-molecule autocatalytic networks are universal metabolic fossils

description: The list of prokaryotes used in the search of autocatalytic networks with their corresponding identifiers, taxonomy, number of Enzyme Commission and Reaction annotations.
DOI: 10.6084/m9.figshare.19375072.v1
title: Supplementary Data 1 from Small-molecule autocatalytic networks are universal metabolic fossils

description: The list of prokaryotes used in the search of autocatalytic networks with their corresponding identifiers, taxonomy, number of Enzyme Commission and Reaction annotations.
DOI: 10.6084/m9.figshare.19375075
title: Supplementary Data 5 from Small-molecule autocatalytic networks are universal metabolic fossils

description: maxRAFs obtained for all 6683 prokaryotes with NAD only. Each file is named after the KEGG genome code, and contains the KEGG IDs for reactions in the maxRAF.
DOI: 10.17632/kxcvnrtxxp.1
title: tabel and figure data hermin

description: Tabels data
DOI: 10.25345/c56w96c7j
title: MassIVE MSV000089076 - Bacterial proteomics responses under free and nanoecapsulated nisin stress
title: Untargeted proteomics was carried out to study the Listeria monocytogenes responses to free and nano-encapsulated lantibiotic nisin.
DOI: 10.17632/6tc5jcxv5x.3
title: No. 24: Medios hegemónicos, conglomerados económicos y gobiernos.

description: La Revista Textos y Contextos, publicación científica de la Facultad de Comunicación Social de la Universidad Central del Ecuador, dedica su edición 24 al tema “Medios hegemónicos, conglomerados económicos y gobiernos”.

Desde su emergencia, el rol de los medios de comunicación se ha vinculado a valores democráticos como la libertad de expresión, el debate informado, el disenso y el derecho a una información veraz y de calidad, sin los cuales peligran las aspiraciones de participación política de una ciudadanía con capacidad para reconocer, exigir y ejercer sus derechos. Sin embargo, con la mercantilización de la información y el monopolio sobre las industrias culturales los medios se convierten en dispositivos de manipulación y control social desde una razón instrumental que ha predominado por encima de los bienes que producen.
DOI: 10.25403/upresearchdata.12776495
title: A computer-based justification for using the simple bend test as the basis for predicting the performance of steel hooked-end fibres in reinforced concrete

description: The documents uploaded consist of data used to construct the graphs and tables in the thesis: "A computer-based justification for using the simple-bend test as the basis for predicting the performance of steel-hooked-end fibres in reinforced concrete". All data were obtained through simulation. The processes followed are described in the thesis.<br>Details of individual documents:- CH3 Simulations - Data obtained from the wire drawing simulations, used to construct the residual stress profiles through the hooked end fibres- Bend Test Results - Results of simulated bend tests conducted on the hooked end fibre- Tensile Test Results - Results of simulated tensile tests conducted on the hooked end fibre- Torsion Test Results - Results of simulated torsion tests conducted on the hooked end fibre- Pull-out convergence - Results of simulated pull-out test conducted on the hooked end fibre, results of convergence studies used to validate the model- Res Stress on Pullout - Results of simulations used to determine the effect of the residual stresses and chosen hardening law on behaviour during pull-out-RBF Approx - Results of inverse problem solved to characterise the material properties of the hooked-end fibre using Radial Basis Functions constructed using data from the tensile, bend and pull-out tests. Comparison with baseline data.
DOI: 10.25403/upresearchdata.12776495.v1
title: A computer-based justification for using the simple bend test as the basis for predicting the performance of steel hooked-end fibres in reinforced concrete

description: The documents uploaded consist of data used to construct the graphs and tables in the thesis: "A computer-based justification for using the simple-bend test as the basis for predicting the performance of steel-hooked-end fibres in reinforced concrete". All data were obtained through simulation. The processes followed are described in the thesis.<br>Details of individual documents:- CH3 Simulations - Data obtained from the wire drawing simulations, used to construct the residual stress profiles through the hooked end fibres- Bend Test Results - Results of simulated bend tests conducted on the hooked end fibre- Tensile Test Results - Results of simulated tensile tests conducted on the hooked end fibre- Torsion Test Results - Results of simulated torsion tests conducted on the hooked end fibre- Pull-out convergence - Results of simulated pull-out test conducted on the hooked end fibre, results of convergence studies used to validate the model- Res Stress on Pullout - Results of simulations used to determine the effect of the residual stresses and chosen hardening law on behaviour during pull-out-RBF Approx - Results of inverse problem solved to characterise the material properties of the hooked-end fibre using Radial Basis Functions constructed using data from the tensile, bend and pull-out tests. Comparison with baseline data.
DOI: 10.17632/n5dbj6626g.1
title: XRD Ti-Ni low and high energy mechanically alloyed

description: Low and high energy mechanically alloyed Ti-Ni powder was studied utilising X-ray diffraction.
DOI: 10.17632/xcw5x5z49r.2
title: Exome sequencing data for CLEC3B

description: Genomic DNA was extracted from peripheral blood using the Genomic DNA Extraction Kit (Invitrogen, Grand Island, NY, US). Exome sequencing data from six patients with inherited macular disorders and three healthy relatives, were analyzed for shared rare variants. ES data of six affected individuals (F1: IV-24, F1: VI-2, F2: IV-2, F3: IV-2, F3: V-3, and F5: V-10) and three unaffected siblings (F3: V-4, F3: V-6 and F5: IV-13) from five Japanese families. A total of ten variants in the SCN11A, GORASP1, ZNF662, TGM4, CLEC3B, DSPP, SYT8, ZCCHC14, and EVPL genes, were consistent with cosegregation analysis.
DOI: 10.17632/6hb8rk3h85.1
title: Model EHFLVIKOR to supplier selection – MATLAB

description: This coding is a product of my master's work "COMPARISON BETWEEN HESITANT FUZZY LINGUISTIC VIKOR METHODS IN THE CONTEXT OF SUPPLIER SELECTION, 2022" at the Postgraduate Program in Administration at Federal Technological University of Paraná. In my study I performed the modeling and simulation based on the article GHADIKOLAEI, A.S.; MADHOUSHI, M.; DIVSALAR, M. Extension of the VIKOR method for group decision making with extended hesitant Fuzzy linguistic information. Neural Computing and Applications, v. 30, n. 12, p. 3589-3602, 2018.
The method was modeled in the EHFLVIKOR file.
The file dados_reais_EHFLVIKOR is the application with real data collected in an electrical service company. 
The other files refer to eight scenario simulations. In simulations 1 to 4, an alternative to the problem was included. In simulations 5 to 8, the inclusion performed refers to one more criterion in the problem.
DOI: 10.17632/zw6sdwxsmx.1
title: Model PDHFLVIKOR to supplier selection - Excel

description: This is a product of my master's work "COMPARISON BETWEEN HESITANT FUZZY LINGUISTIC VIKOR METHODS IN THE CONTEXT OF SUPPLIER SELECTION, 2022" at the Postgraduate Program in Administration at Federal Technological University of Paraná. In my study I performed the modeling and simulation based on the article "WU, Z.; XU, J.; JIANG, X.; ZHONG, L. Two MAGDM models based on hesitant Fuzzy linguistic term sets with possibility distributions: VIKOR and TOPSIS. Information Sciences, v. 473, p. 101-120, 2019", but only the VIKOR method was modelling.
DOI: 10.17632/6pzcyphdg6.4
title: Insect herbivory immediately before the eclipse of the gymnosperms: The Dawangzhangzi plant assemblage of Northeastern China

description: The Supporting Information provides data, extended source records, additional photographic documentation, and a review of the literature that bolsters various aspects of the plant–insect interactions at the Dawangzhangzi (DW) locality. Rarefaction analyses of plant specimens and damage types versus surface area sampled across the DW plant assemblage are in Appendix S13. Photographic images representing continuation of Figures 2 to 5 of the main text are presented here as Appendix S14, Figures S6 to S19, detail the herbivore component communities on the major plants. These figures should be closely consulted for understanding the breadth of the functional feeding groups (FFGs) and damage types (DTs) such as on the heavily herbivorized conifer Liaoningocladus boii. Figure S19 documents evidence for antiherbivore defenses at DW. We present DW plant host specificity values in Appendix S15, descriptions and data for six new Dawangzhangzi DTs in Appendix S16, to be included in Version 4 of Guide to Insect and Other Damage Types on Compressed Plant Fossils, and documentation supporting the main text discussion in Appendices S18–S22.
DOI: 10.6084/m9.figshare.17060081
title: Speed Data .xls

description: This is a set of data about the speed perception of drivers on curves
DOI: 10.6084/m9.figshare.17060081.v1
title: Speed Data .xls

description: This is a set of data about the speed perception of drivers on curves
DOI: 10.17632/hn6nxyt9v7.1
title: Data and code of: A novel hybrid water quality forecast model based on real-time data decomposition and error correction

description: Data and code related to the work van Kim, J.,  Yu, J.,  Kang, C., Ryang, G., Wei, Y. and Wang, X. "A novel hybrid water quality forecast model based on real-time data decomposition and error correction" (under review).
DOI: 10.17632/r8wtj38bv4.1
title: Asociación entre el tiempo en pantalla y la actividad física realizada por escolares durante el estado de emergencia por Covid-19 / Cuestionario

description: El cuestionario consta de preguntas que permiten conocer el contexto sociodemográfico del participante. Además, se midió la variable de exposición mediante el Cuestionario de Tiempo en Pantallas elaborado por los investigadores. Esta herramienta permite evaluar el tiempo (en horas) que pasa el niño frente a aparatos electrónicos dentro de la última semana, según la percepción de su apoderado o cuidador. Consta de siete preguntas que pasaron por un juicio de expertos (V=0.95)  y un estudio piloto previo. La variable de resultado fue el nivel de AF (actividad física) obtenido mediante el PAQ-C  (Cuestionario de Actividad Física para niños) que se aplica en niños de 8-14 años y mide su actividad autorreportada durante los últimos 7 días
DOI: 10.17632/sv95c7ydpy.5
title: Dataset on Social and Psychological Effects of the COVID-19 Pandemic in Turkey

description: This data was collected to investigate how intolerance to distress and anxiety affects some of the behaviors that can be changed in response to the Covid-19 pandemic. This dataset comes from a survey of 2,868 people in Turkey about the effects of the Covid -19 pandemic. The dataset is ideal for studying how the Covid -19 pandemic shaped people's intolerance to distress and anxiety. The survey looked at personal cleaning habits, bank/credit card usage, online shopping, personal security, and stockpiling. The data also included whether an individual or a household member had been officially diagnosed with Covid-19 and socio-demographic data.
DOI: 10.17632/wrx22bn64h.2
title: PARS Low-Cost Portable Rehabilitation System for Upper Arm

description: This study introduces a compact low-cost single degree of freedom end-effector type upper arm rehabilitation system (PARS) along with its hardware and software elements. Proposed system is also suitable to be used in conjunction with a gaming environment. Throughout the study structural setup of the system was explained in detail along with its electronics, control system and gaming software.  Introduced virtual gaming interface supports various game levels with different difficulties generated via interaction type control algorithms. Having simple structural design constructed by using basic available components, proposed system can be easily manufactured and utilized in physical rehabilitation procedures by using supplied open source codes. Introduced systems compactness and user friendly interface also allow its usage for individual home therapies for remote rehabilitation treatment procedures.
DOI: 10.17632/3vxnnzkxyk.2
title: Al-Mn-Cr

description: Synergistic factors for enhanced high-temperature strength of Al-Mn-Cr heat-resistant alloy fabricated using laser-based powder bed fusion
DOI: 10.5283/epub.51915
title: Data archive of the dissertation "Niederfeld-Spinpaardynamik in organischen Leuchtdioden"

description: Sekundärdaten, Quelldaten für Abbildungen und tex- bzw. pdf-Dateien
DOI: 10.17632/kjkhy3tfys.2
title: Microbial labilization and diversification of pyrogenic dissolved organic matter

description: Ultrahigh resolution mass spectrometry (FT-ICR-MS) data for pyrogenic dissolved organic matter before and after microbial incubation. Full materials and methods, as well as interpretations, can be found in the corresponding manuscript (citation and DOI below). 

Goranov, A.I., Wozniak, A.S., Bostick, K.W., Zimmerman, A.R., Mitra, S. and Hatcher, P.G. (2022) Microbial labilization and diversification of pyrogenic dissolved organic matter. Biogeosciences, 19 (5), 1491-1514. doi: 10.5194/bg-19-1491-2022
DOI: 10.17632/6mhrhn7rxc.5
title: DSAIL camera trap images of wildlife species from a conservancy in Kenya

description: This dataset has camera trap images of wildlife species from a conservancy in Kenya and their annotation. They are based on the Raspberry Pi 2, Raspberry Pi Zero and the OpenMV Cam H7 devices. The camera traps were deployed in the conservancy from June 2021 to December 2021. We have 6 categories of grazing mammals in this dataset; Burchell's zebra, Defassa waterbuck, bushbuck, Common warthog, impala and the Syke's monkey.
DOI: 10.17632/bnrxs39w3p.1
title: Appendix to IEEE CDC22 article: Modelling and Control of COVID-19 in Small Environments with Two-Group Population

description: This document is an external appendix to the article submitted to IEEE CDC22 - Modelling and Control of COVID-19 in Small Environments with Two-Group Population. It mainly gives analytical expressions of coefficients in (24) of the article.
DOI: 10.17632/4g4yzfgjv8.1
title: LINF_230018500

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/ngs7rwskk8.1
title: LINF_230018650

description: small hydrophilic endoplasmic reticulum-associated protein (sherp) (SHERP2)
Leishmania infantum (strain JPCM5)