cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25573983
title: Supplementary Material for: Disease etiology impact on outcomes of hepatocellular carcinoma patients treated with atezolizumab plus bevacizumab: a real-world, multicenter study

description: Introduction
The impact of etiology on response to immunotherapy in advanced hepatocellular carcinoma (HCC) is being debated, with contrasting findings between early and recent post-hoc analyses of IMbrave-150 and metanalyses of clinical trials of PD-1/PD-L1 blockers. As a results, it is not clear whether the first-line systemic treatment atezolizumab plus bevacizumab is equally effective in viral and non-viral patients.
Methods
We retrospectively analyzed 885 HCC patients treated with first-line A + B from multiple centers from Eastern and Western countries, 53.9% having viral and 46.1% non-viral etiology. Baseline clinical and laboratory characteristics were analyzed with uni- and multi-variate models to explore potential differences on overall survival (OS), time to progression (TTP), disease control rates based on etiology and to identify putative prognostic factors in etiology subgroups. Treatment toxicities and access to second-line treatments and outcomes were also reported and compared between etiologies.
Results
Overall, no statistically significant differences were found in OS (mOS: viral 15.9 months; non-viral 16.3 months), TTP (mTTP: viral 8.3 months; non-viral 7.2 months), and disease control rates (DCR: viral 78.1%; non-viral 80.8%) based on etiology. Prognostic factors of survival and progression were mainly shared between viral and non-viral etiologies, including alpha-fetoprotein, aspartate transaminase, neutrophil-to-lymphocyte ratio (NLR) and ALBI score. Exploratory analyses highlighted a possible stronger association of immunological factors, i.e. NLR and eosinophil count, to treatment outcomes in viral patients.
The toxicity profile, the access to and type of second-line treatments and their outcome in terms of OS almost overlap in the two etiology subgroups. 
Conclusion
Atezolizumab plus bevacizumab efficacy does not vary according to underlying etiology of HCC in a multicenter, real-world population, matching recent post-hoc findings from the IMbrave-150 trial. Preliminary analyses suggest that some prognostic factors differ between viral and non-viral patients, potentially due to biological and immunological differences. 
Prospective and comparative trials stratifying by etiology are warranted to validate these findings and guide clinical practice.
DOI: 10.7303/syn50614194
title: THU_EP
DOI: 10.5281/zenodo.12734422
title: PaleoDA South America reconstruction

description: This repository contains the reconstruction data ase presented in "A continental reconstruction of hydroclimatic variability in South America during the past 2000 years", submitted to Climate of the Past in February 2024 [https://egusphere.copernicus.org/preprints/2024/egusphere-2024-545/].  The data can be used to reproduce the Figures of the manuscript using the code in the accompanying Github repository: https://github.com/mchoblet/paleoda_sa/tree/main

Origin of Files:

See paper_experiments.ipynb in  https://github.com/mchoblet/paleoda_sa/

Structure:

The files were compressed for space reasons.

Each ZIP files contains the reconstructions for a specic reconstruction configuration (normal error, same error, half error) and seasonality (annual, DJF). The error type refers to how the proxy record error was defined (see section 3.4 of the manuscript) and the seasonality

The standard reconstruction is the annual normal error reconstruction. The Folder contains subfoldes for different types of reconstructions depending on the proxy data that was used as input (standard is all_proxies). Reconstructions have been performed for five different model priors (see input data here https://zenodo.org/uploads/10370001). I recommend using the multi-model reconstruction mean. 'Proxy_frac' indicates that in each Monte Carlo reconstruction (the mean of 50 iterations is saved) 80% of the proxy record data was used as input data. The structure of the files is relevant for the plotting scripts.

Revision in July 2024:

Due to the inclusion of a dozen more proxy records (11 historical indices and 1 lake sediment record), the results have (slightly) changed and needed to be updated.
DOI: 10.5066/p92g34r9
title: National Land Cover Database (NLCD) 1992 Land Cover Conterminous United States

description: The National Land Cover Database (NLCD) 1992 Land Cover layer was produced through a cooperative project conducted by the Multi-Resolution Land Characteristics (MRLC) Consortium. The MRLC Consortium is a partnership of federal agencies (www.mrlc.gov), consisting of the U.S. Geological Survey (USGS), the National Oceanic and Atmospheric Administration (NOAA), the U.S. Environmental Protection Agency (EPA), the U.S. Department of Agriculture - Forest Service (USDA-FS), the National Park Service (NPS), the U.S. Fish and Wildlife Service (FWS), the Bureau of Land Management (BLM) and the USDA Natural Resources Conservation Service (NRCS). One of the primary goals of the project is to generate a current, consistent, seamless, and accurate land cover data for the United States at medium spatial resolution. Questions about the NLCD can be directed to the NLCD land cover mapping team at USGS EROS, Sioux Falls, SD (605)594-6151 or mrlc@usgs.gov.
DOI: 10.5281/zenodo.10781398
title: Cclayton_WRFChem_SSP_pres
DOI: 10.6084/m9.figshare.26316208
title: Source data of Cooling positronium to ultralow velocities with a chirped laser pulse train

description: Source data of all figures in the paper "Cooling positronium to ultralow velocities with a chirped laser pulse train", published in Nature.The paper is available at the following URL: https://www.nature.com/articles/s41586-024-07912-0.<br>
DOI: 10.15121/1811518
title: G-Function Library for Modeling Vertical Bore Ground Heat Exchanger

description: This library contains g-functions (thermal response functions) for standard, regularly spaced vertical borehole ground heat exchangers. In total, it contains 34, 321 configurations. To permit interpolation, each configuration has g-functions for heights of 24, 48, 96, 192, and 384 m. All the g-functions were calculated with burial depths of 2m, and borehole diameters of 15 to 17.5 cm, depending on height. In configurations with uniform spacing, the spacing between the boreholes is set to 5m, though it can be scaled to other horizontal spacings.
DOI: 10.15468/dl.pzbnwu
title: Occurrence Download

description: A dataset containing 7655 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Cave bat diversity of Bohol Island, Philippines"
 ]
}

 The dataset includes 7655 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039041-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/3ds1-8z15
title: JWST transit spectroscopy of K2-18 b
DOI: 10.17909/r627-v590
title: JWST GO 2334 - LHS1140b

description: The data contains two observations of primary transit of LHS1140b. The two transits were observed by JWST using the NIRSpec instrument; one transit was observed with the G235H grating and one transit with the G395H grating.
DOI: 10.17909/x636-7g89
title: WASP-31b: TESS Sector 36

description: TESS Sector 36 observations of WASP-31b
DOI: 10.48324/dandi.000167/0.220928.1306
title: Two photon calcium imaging of mice piriform cortex under passive odor presentation

description: Two-photon calcium imaging of mouse piriform cortex pyramidal population, under head-fixed condition and passive odor stimulus delivery. There were 10 different odors used (8 trials each), delivered at 10-second for each of the 30-second trial. Temperature sensor was also recorded as a proxy for sniffing behaviors. Imaging was preprocessed with suite2p. The data was collected by Simon Daste in the Fleischmann lab at Brown university. Showcase notebook available at: https://gitlab.com/fleischmann-lab/datasets/daste-odor-set-2021-11
DOI: 10.48529/ckte-3w47
title: Global Financial Inclusion (Global Findex) Database 2011
title: USA_2011_FINDEX_v02_M
DOI: 10.5281/zenodo.10161509
title: Source code and model outputs for 'Increasing Aerosol Direct Effect Despite Declining Global Emissions'

description: Source code, model outputs and python scripts used for the publication of Hermant, A., Huusko, L., & Mauritsen, T: Increasing Aerosol Direct Effect Despite Declining Global Emissions
DOI: 10.5281/zenodo.4601581
title: Data_WP4_3_TAD Data

description: The datasets include data collected by time activity diaries (TAD) in the form of questionnaires from each participant of the city campaigns in Athens, Thessaloniki, Madrid, Milan, Brno, Basel and Ljubljana. The questionnaires were digitized in excel<br> format to match the sensors data. The information the time activity diaries provided relates to the type and the place of an activity the participant performs in a specific time frame. The activity (resting, playing, sleeping, sports, cooking, smoking, cleaning, running) can be indoor or outdoor, the participant can be in transit using public or personal means of transportation (bus, car, motorbike, bicycle,<br> foot, other). Also, information regarding the house conditions (candles on/off, air conditioning – fan on/off, fireplace, windows open/closed) is also provided. All the data collected through the TAD surveys are stored in the open repository in different subfolders named according to the city where the data were collected and in further two subfolders named according to the season when the data was collected (“WINTER” and “SUMMER”). Single files encompassing the data measured are named according to the following scheme: City_Season_ParticipantID.xlsx (e.g. ATH_S_P032.xlsx).<br> The anonymized data is stored in MS Excel xls and xlsx formats to maximise the potential for use with a variety of analytical software.
DOI: 10.6084/m9.figshare.26335141
title: Supplementary Material for: Comparison of the efficacy, safety and quality of life of pegylated liposomal doxorubicin-cyclophosphamide versus epirubicin-cyclophosphamide in patients with early stage HER2-negative breast cancer: A prospective, randomized, multicenter, Phase II study

description: Introduction: This multicenter, phase II randomized, non-inferiority study reports from the first prospective two-armed randomized control trial that compared the efficacy, safety and quality-of-life of pegylated liposomal doxorubicin (PLD)-based and epirubicin-based as adjuvant chemotherapy for stage I-II Human Epidermal Growth Factor Receptor 2 (HER2)-negative breast cancer. 
Methods: Patients with stage I/II HER2-negative breast cancer received PLD (37.5mg/m2, Q3W, 5 cycles, LC arm) plus cyclophosphamide (600mg/m2) or epirubicin (90mg/m2, Q3W, 4 cycles, EC arm) plus cyclophosphamide (600mg/m2). Randomization was stratified by lymph node, ER and PR status. The primary endpoint was disease-free survival (DFS), and secondary endpoints were overall survival (OS), safety profiles, and quality of life (QoL). QoL was assessed using the EORTC QLQ-C30 and QLQ-BR23 questionnaires. 
Results: A total of 256 patients were assigned to LC (n=148) and EC (n=108). There was no difference in 5-year DFS and OS rate between two groups. LC-based adjuvant regimens had significantly less alopecia, less grade 3-4 hematologic adverse events (AEs). Significantly improved QoL was observed in the LC arm during and after treatment for symptoms including fatigue, nausea and vomiting, and systemic therapy side effects. 
Conclusion: Comparable efficacy and safety between adjuvant PLD and epirubicin for stage I-II HER2-negative breast cancer was observed. There was no difference in 5-year DFS and OS rate between the two treatment arms. However, less grade 3-4 AEs and a trend of favorable QoL symptom scales were observed in the LC arm, suggesting that PLD-containing regimen could become a new standard treatment for early stage HER2-negative breast cancer patients.
DOI: 10.11588/data/wi9184
title: Ground Truth Model for Pracalit for Sanskrit and Newar MSS 16th to 19th C.

description: Ground truth data for a an OCR model. Will be continually updated. Originally trained on Transkribus with a PyLaia model created from ground truth data based on transcripts into Pracalit Unicode of four Nepalese manuscripts. The manuscripts used to create this model are Staatsbibliothek zu Berlin's Hitopadeśa (MIK I 4851) (mixed Newar and Sanskrit dating to 1561) and Vetālapañcaviṃśati (HS. Or. 6414) (Newar dating to 1675) as well as Cambridge Digital Library's Avalokiteśvaraguṇakāraṇḍavyūha (MS Add. 1322) (Sanskrit, 18th century) and the Royal Asiatic Society Online Collection's Madhyamasvayaṃbhūpurāṇa (RAS Hodgson MS 23) (Newar and Sanskrit dating to c. 1800). The training was done on 441 pages and validation on 242 pages. This model does not recognise spacing, except for large gaps (i.e. for pictures or string holes). Newar word divider markers may not be represented or may be transcribed as virama. In general, the model is made for MSS with scriptio continua and will transcribe into scriptio continua into Pracalit Unicode. Transcription was performed by Dr Alexander O'Neill (SOAS University of London). Transcription of the Vetālapañcaviṃśati (HS. Or. 6414) and Madhyamasvayaṃbhūpurāṇa (RAS Hodgson MS 23) was aided by unpublished materials provided by Dr Felix Otter (Philipps-Universität Marburg), as well as the published transcription in Shakya, Min Bahadur, and Shanta Harsha Bajracharya, eds. "Svayambhū Purāṇa." Lalitpur: Nagarjuna Institute of Exact Methods, 2001. The transcription of Avalokiteśvaraguṇakāraṇḍavyūha (MS Add. 1322) was aided by the transcription provided by the Digital Sanskrit Buddhist Canon Project based on Lokesh Chandra, "Guṇakāraṇḍavyūhasūtram," New Delhi: International Academy of Indian Culture, 1999.
DOI: 10.1285/i20356609v14i2p829
title: Planning: A Glue for Development Coalitions? State Actors' Agency and Power Relationships in Urban Development Projects in Milan and Brussels

description: In this paper, I combine urban regime analysis and financialisation scholarships to uncover the role of planning and question the role of state actors in urban development processes. Through an analysis of CityLife in Milan and Tour and Taxis in Brussels, I argue that state actors have a strong agency in decision making as they own a critical resource: planning. My investigation reveals that, in projects characterised by uncertainty and internal conflicts, planning functions as a glue of development coalitions. Local governments mobilise it to bring together private and public interests, in order to achieve their agendas. Nevertheless, this glue function plays out differently in Milan and Brussels. While in Milan local administrations used planning to facilitate the anchoring of capital, in Brussels local governments enacted planning to shift the balance of power between them. This outcome reveals contextual differences that ultimately depend on local governance settings and planning systems. The comparison depicts the making of two different development regimes. CityLife indicates a financialised turn in governance, in which planning choices are driven mainly by economic – and financial – imperatives. Tour and Taxis symbolises an experimental entrepreneurial urban regime, a sort of "laboratory" to test new governance and planning frameworks.
DOI: 10.17632/7ckzzz3xz5.1
title: INSYDE-Belgium

description: The dataset includes the materials supporting the development of INSYDE-Belgium (INSYDE-BE), a multi-variable synthetic flood damage model for the residential sector, adapted from the original context of developement (Italy) to the Walloon Region.
In detail, the dataset contains:
- the summary report of the interviews with people who experienced flood events along the rivers Ourthe and Senne (surveys conducted over the period January-February 2020);
- the summary table of the virtual surveys for the characterization of micro- and ultra-micro scale building features in the Walloon Region;
- a report describing the damage mechanisms implemented in the model;
- the R code of the developed damage functions for INSYDE-BE.
DOI: 10.17632/hhrb7phdyx.1
title: NADiA: News Articles Dataset in Arabic for Multi-Label Text Categorization

description: NADiA Dataset is the largest, to the best of our knowledge, source for Arabic textual data that can be used in any NLP related task such as text classification. We chose the abbreviation NADiA as it is a common Arabic name. The data was collected by scraping ‘SkyNewsArabia’ and ‘Masrawy’ news websites using Python scripts that are fine-tuned for each website. SkyNewsArabia will be referred to as NADiA1, while the latter would be NADiA2. NADiA1 is a big dataset containing 37,445 files, while NADiA2 is a huge dataset that contains 678,563 files. However, after filtering and cleaning we reduced the numbers to 35,416 and 451,230 for NADiA 1 and 2, respectively. NADiA1 consists of the following categories (24, displayed in English for easy referencing): News, North Africa, Levant, Middle East, The Americas, Research, Finance & Economy, War & Terrorism, Gulf, Europe, Political Figures, Iran, Technology, Russia, Sports, Tennis, Football, English League, Arabian Sports, Spanish League, Health, East Asia, Environment, Other Countries NADiA2 consists of the following categories (28, displayed in English for easy referencing): Politics, Middle East, Asia, Africa, United States, Europe, Other Countries, Leaders, Sports, Arabian Sports, Football Clubs, Spanish League, Egyptian League, Finance, Arts, Cinema & TV, Fashion, Health, Pregnancy & Delivery, Cancer, Obesity, Social Media, Technology, Religion, Islamic, Fatawa, Worship, Prophet Biography
DOI: 10.17909/yk3b-g272
title: WASP-31b: TESS Sector 9

description: TESS Sector 9 observations of WASP-31b
DOI: 10.26093/cds/vizier.51620254
title: Concordance fluxes; calibration X-Ray telescopes

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Concordance: in-flight calibration of X-ray telescopes without absolute references.' (bibcode: 2021AJ....162..254M)
DOI: 10.5281/zenodo.10397812
title: Data for section 3.2 of Stellar Population Properties in the Stellar Streams Around SPRC047

description: Supplementary (input and output) data for Section 3.2 ("Measurement Uncertainties in the Deconvolved Image") of the paper "Stellar Population Properties in the Stellar Streams Around SPRC047", accepted for publication in ApJ and available in arXiv:2312.05358. The source code for this project is publicly available on Gitlab and is archived on SoftwareHeritage for longevity.

A brief description of the contents in this repository are given below. Note that because the AWMLE deconvolution code is not yet publicly released, the second two files below are necessary (they are used by the reproducible Makefile of this section on Gitlab).



sprc047_3.6um-bck.fits: Spitzer image of SPRC047.

deconvolved-it75.fits: The deconvolved Spitzer image.

deconvolved-simulated.tar.gz: 100 realizations of random noise over a point-like source used to estimate the error of the deconvolved measurements.
DOI: 10.5281/zenodo.10729856
title: Database of fitted spectra for: Changing-Look AGNs - I. Tracking the transition on the main sequence of quasars

description: Results from the spectral fitting for a sample of changing-look active galactic nuclei (AGNs) with SDSS spectroscopy using PyQSOFit.
description: The database contains two master sub-directories: "FITS" and "PDF". The "FITS" contain the fitted parameters in fits table format. Whereas, the "PDF" contains the figure for the fitted spectrum for each source per epoch in pdf format. Each of these master sub-directories contain several sub-directories organized by the names of the first author from where the sources have been collected. For example, "Graham" refers to the sources from SDSS discovered by Graham et al. (2020). Each of these named sub-directories contains the respective SDSS sources procured from the respective discovery papers (the folders are named as per the SDSS nomenclature). Within each of these SDSS-named folders, we have multiple fits (or pdf) files with the format "Plate-MJD-Fiber" from the SDSS. We refer those who are interested in using this dataset to Panda & Sniegowska (2024) for more details. We kindly request if these datasets and the fitted parameter files are useful for your research, please cite our work following the above-mentioned reference.
DOI: 10.5281/zenodo.10730174
title: About the cluster data and cluster members in the article Investigating 56 High Galactic Latitude Open Cluster Candidates in Gaia DR3

description: Using Gaia DR3 data, we revisit 56 high Galactic latitude (|b| ⩾ 30◦ ) open cluster (OC) candidates that those exhibit with poor shapes of color-magnitude diagrams (CMDs), including unclear and paired main sequences. We aim to confirm their physical reality, and to explore whether the special MS morphology is intrinsic to genuine OCs. Initially, we re-determine cluster memberships by integrating five outlier detection algorithms into the pyUPMASK. However, this work fails to reproduce the 56 clusters and instead reveal six non-duplicates. To ascertain whether these six clusters are real OCs, we build synthetic CMDs to derive reliable cluster properties, including fundamental parameters, binary fraction, and the total mass of the cluster. Subsequently, we investigate structure parameters, relationships between mass and age, as well as mass and radius, for the six candidate OCs. Finally, we utilize a multidimensional approach, incorporating spatial structure, cluster properties, kinematic attributes, and CMD verification, to further assess their physical reality as genuine OCs. Our resultsindicate that the six candidates should be physical OCs, exhibiting well-defined CMD characteristics. Moreover, we discover two of the six OCs as potential binary clusters.member.rar contains the members of these six clusters, and some parameters of the clusters in cluster.csv.
DOI: 10.5281/zenodo.12780143
title: Data and scripts for "Unraveling the discrepancies between Eulerian and Lagrangian moisture tracking models in monsoon- and westerly-dominated basins of the Tibetan Plateau", to appear in Atmos. Chem. Phys.
DOI: 10.5281/zenodo.12887386
title: Diachronic Annotated Corpus of Newar

description: This dataset contains segmented and part-of-speech-tagged files that comprise the ongoing Diachronic Annotated Corpus of Newar (DACON). Files are provided in .txt format.

File names are explained as follows:

cnew (Classical Newar)century (e.g. 12)short text name (and other information such as manuscript name (e.g., MSB) and line number completed for incomplete texts (e.g. 10000))SEG or POS (segmented or part-of-speech-tagged

e.g. cnew19-manicuda-10000_SEG.txt

For full details, including text citations with discussion, please see: O'Neill & Meelen, "The Diachronic Annotated Corpus of Newar: from Manuscript to Morphosyntax," Cahiers de Linguistique Asie Orientale (2024).

Annotation Manual Part I (Preprocessing)

Annotation Manual Part II (Segmentation and POS Tagging)

Tools for the Diachronic Annotated Corpus of Newar (DACON)
DOI: 10.5281/zenodo.13375625
title: Coping with Collapse: Functional Robustness of Coral-Reef Fish Network to Simulated Cascade Extinction

description: Data set, codes and results related to the article "Coping with Collapse: Functional Robustness of Coral-Reef Fish Network to Simulated Cascade Extinction", accepted in the periodic Global Change Biology. Stored are the full results of site occupancy models fitted to fish data, with coral and turf algae cover as predictor variables (results published in Luza et al. 2022, Scientific Reports), and the results of the present article. The RData also contains site coordinates, and the fish traits used in trait-based analyzes.