cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28571829.v1
title: Supplementary Material from A new notosuchian crocodyliform from the Paleocene of Patagonia and the survival of a large-bodied terrestrial lineage across the K–Pg mass extinction

description: pcrjak.run
DOI: 10.17632/dswjcrbs92
title: Repeat RNA infection

description: Aberrant expression of repeat RNAs in pancreatic ductal adenocarcinoma (PDAC) mimic viral-like responses with implications on tumor cell state and the response of the surrounding microenvironment. To better understand the relationship of repeat RNAs in human PDAC, we performed spatial molecular imaging at single cell resolution in 46 primary tumors revealing correlations of high repeat RNA expression with alterations in epithelial state in PDAC cells and myofibroblast phenotype in cancer-associated fibroblasts (CAFs). This loss of cellular identity is observed with dosing of extracellular vesicles (EVs) and individual repeat RNAs of PDAC and CAF cell culture models pointing to cell-cell intercommunication of these viral-like elements. Differences in PDAC and CAF response are driven through distinct innate immune signaling through interferon regulatory transcription factor 3 (IRF3). The cell context specific viral-like responses to repeat RNAs provides a mechanism for modulation of cellular plasticity in diverse cell types in the PDAC microenvironment.
DOI: 10.6084/m9.figshare.18054926.v1
title: SPSS Data.sav

description: Data represents comparison of three different course configurations of the 6 Minute Walk Test and two different methods of measurement (mathematical calculation and a measuring wheel). Config A represents a 12-meter straight walkway, Config B represents a 30-meter straight walkway, and Config C represents a 12-meter by 1.2-meter rectangular walkway.
DOI: 10.6084/m9.figshare.25632498.v3
title: <b>Isolation and characterization of a novel S1-gene insertion porcine epidemic diarrhea virus with low pathogenicity in newborn piglets</b>

description: Isolation and characterization of a novel S1-gene insertion porcine epidemic diarrhea virus with low pathogenicity in newborn piglets
DOI: 10.6084/m9.figshare.7511243.v1
title: Impact of free thyroxine levels and other clinical factors on bare metal stent restenosis

description: ABSTRACT Objective Thyroid hormones have both direct and indirect effects on thermogenesis such as modulating vascular smooth muscle cell proliferation. However, the influence of more subtle changes in thyroid hormones on coronary atherosclerosis remains a matter of speculation. Smooth muscle cells play a crucial role in the pathogenesis of in-stent restenosis (ISR). However, the relationship between free thyroxine (fT4) and ISR has not been studied. In the present study, we aimed to assess the role of preprocedural serum fT4 level on the development of ISR in patients undergoing coronary bare metal stent (BMS) implantation. Materials and methods We enrolled and analyzed clinical, biochemical, and angiographic data from 705 consecutive patients without a history of primary thyroid disease [mean age 60.3 ± 9.3 years, 505 (72%) male]; all patients had undergone BMS implantation and further control coronary angiography owing to stable or unstable angina pectoris. Patients were divided into 3 tertiles based on preprocedural serum fT4 levels. Results ISR was observed in 53 (23%) patients in the lowest tertile, 82 (35%) patients in the second tertile, and 107 (46%) patients in the highest fT4 tertile (p &lt; 0.001). Using multiple logistic regression analysis, five characteristics emerged as independent predictors of ISR: diabetes mellitus, smoking, HDL-cholesterol, stent length, and preprocedural serum fT4 level. In receiver operating characteristics curve analysis, fT4 level &gt; 1.23 mg/dL had 70% sensitivity and 73% specificity (AUC: 0.75, p &lt; 0.001) in predicting ISR. Conclusion Higher preprocedural serum fT4 is a powerful and independent predictor of BMS restenosis in patients with stable and unstable angina pectoris.
DOI: 10.17632/tz7krp8rvz
title: Electric car purchase intention

description: The dataset contains the data collected through an online platform and via emails from February 2020 to April 2020 from management students pursuing their postgraduate program in India. This data obtained to investigate and to identify the dimensionalities of electric car (e-car) purchase intentions among postgraduate management students in India. The collected data was cleaned by removing the invalid and straight-lined responses. The cleaned data includes 510 responses on 31 items that measures the management students’ intentions to purchase an electric car (e-car) on a five point Likert scale (strongly disagree-1 to strongly agree-5) besides the responses on demographic profile of respondents. Items included in the study were relevant to the factors Purchase Intention (PI), Technological Benefits(TB), Driving Convenience(DC), Charging Convenience(CC), Environmental Concern(EC), Social Benefits(SB), Economic Benefits(EB) and Government Policy(GP). After assessing the face validity, convergent validity and discriminant validity using appropriate measures, confirmatory factor analysis was carried out to assess the proposed model. SEM was used to test the hypothesis about the structural relationship among the factors.
DOI: 10.6084/m9.figshare.28502615.v2
title: D​ataset

description: The virtual data and real data required for training
DOI: 10.6084/m9.figshare.26508733.v1
title: Dataset for the parer "New Formulae for Vegetation-Induced Flow Resistance Considering Submergence with Explicit Drag Coefficient"

description: Dataset for the parer "New Formulae for Vegetation-Induced Flow Resistance Considering Submergence with Explicit Drag Coefficient"
DOI: 10.6084/m9.figshare.28449143.v1
title: Template script and GROMACS command

description: This collection contains information on the GROMACS command and template scripts for running the extract data in "Assessing the impact of DDR genetic variants on structural stability via molecular dynamics simulations". The <b>table summary </b>contains the generic GROMACS commands to run the extract file in the "Assessing the impact of DDR genetic variants on structural stability via molecular dynamics simulations" collections. The <b>template</b> zip file contains two directories: 1) Chimera, which is for generating variants .pdb file from the gene pdb template. 2) GROMACS, which is for generating basic GROMACS simulation inputs for each variant.
DOI: 10.6084/m9.figshare.27160629.v3
title: The lithosphere-asthenosphere system beneath the1North Atlantic and surroundings: results from2multi-observable probabilistic inversions

description: The North Atlantic region is a complex geodynamic setting that comprises multiple continental blocks, sedimentary basins, mid-ocean ridge systems and prominent hotspots. Recent geophysical surveys of the near-surface have enhanced our understanding of crustal elements and the shallow lithosphere. However, our knowledge of the deep lithospheric structure and the physical state and dynamics of the upper mantle is still limited. Here, we exploit the combined sensitivity of surface-wave data, geoid anomalies, absolute topography and surface heat flow to obtain full thermochemical models of the region from the surface down to 350 km. We jointly invert these datasets using a simulation-based, multi-observable probabilistic framework. We validate our results with independent thermobarometric and chemical information from mantle xenoliths and test the effects of using different seismic models on the inversion results. Our model reveals an intricate sublithospheric flow system, driven by the interaction of deep upwellings with the highly irregular lithospheric structure. We corroborate that the main thermal anomaly in the sublithospheric mantle shows a tilted geometry, moving towards Greenland with depth. We reveal that this large-scale anomaly transition into a more complex pattern once it reaches depths of $\sim$ 150 km beneath the North Atlantic. Small-scale downwellings originate from the margins of continental domains, resulting in a complex circulation pattern that limits the radial spread of the deep upwellings and preferentially focuses them within regions of thin lithosphere along a N-S direction. Distinct compositional anomalies in the Greenland lithosphere delineate the North Atlantic Craton, the Nagssugtoqidian mobile belt, and the covered remnants of the Disko Craton. In continental Europe, the East European Craton shows clear indications of depletion in incompatible elements, with the Kola-Karelian cratonic region showing the highest levels of depletion. Our model serves as a base to make interpretations on the enigmatic palaeotectonic history of the North-Atlantic region.
DOI: 10.6084/m9.figshare.4545952.v1
title: Data and Syntax for TDDS and 12 moral dilemmas

description: Dataset Containing TDDS and 12 Moral DIlemmas used in the publication: Individual Differences in Moral Disgust Do Not Predict Utilitarian Judgments, Sexual and Pathogen Disgust Do. This is the data used in the publication:<br><br><b>Laakasuo, M., Sundvall, J. & Drosinou, M. (2017).</b> Individual Differences in Moral Disgust Do Not Predict Utilitarian Judgments, Sexual and Pathogen Disgust Do. <i>Scientific Reports, 7</i>:45526, DOI: 10.1038/srep45526<br>
DOI: 10.17632/k32j8yppt2
title: Live Macaque Trade 2000-2020 for commercial, scientific, or medical purposes 

description: The CITES Trade Database was accessed at two different time-points:
A. 6 October 2022- "Original CITES Trade Database Dataset Oct6"
B. 1 January 2021- "CITES Trade Database US trade Jan1"= contains reports of all imports to the US
DOI: 10.25392/leicester.data.15142449.v1
title: Dataset to accompanyto "Identifying the Psychological Processes used by Male and Female Students" (Science Education, Hall et al.)

description: Dataset to accompany Hall, S.S., Puttick, S. & Maltby, J. (in press). Identifying the Psychological Processes used by Male and Female Students when Learning about Science Technology Engineering and Mathematics: A Linguistic Inquiry. <em>Science Education</em>.
DOI: 10.6084/m9.figshare.19092729.v1
title: Additional file 1 of Subtyping of sarcomas based on pathway enrichment scores in bulk and single cell transcriptomes

description: Additional file 1: Table S1. A summary of the datasets analyzed.
DOI: 10.6084/m9.figshare.27673563.v1
title: zhilifinal_need_upload.fasta

description: We present here the chromosome-level genome of the predatory mites <i>Phytoseiulus persimilis</i> using a PacBio high fidelity (HiFi) approach. The final assembly is 190.48 Mb in total length , with a scaffold N50 of 57.94Mb and 98.3% BUSCO completeness, providing an excellent genomic resource for further research on P. persimilis. We identified 59.10 Mb of repetitive sequences, accounting for 27.59% of the assembled genome.
DOI: 10.6084/m9.figshare.5126479.v1
title: Supplementary Material for: Pharmacological Characterization of a Highly Selective and Potent Partial Agonist of the MT<sub>2</sub> Melatonin Receptor

description: <b><i>Background/Aims:</i></b> The MT<sub>2</sub> melatonin receptor is a potential target for treating circadian rhythm sleep disorders. This study aims to characterize the recently identified MT<sub>2</sub> melatonin receptor agonist. <b><i>Methods:</i></b> The pharmacological properties of the MT<sub>2</sub> melatonin receptor-selective agonist as exemplified by compound 1 [N-(2-[7-benzyl-1,6-dihydro-2H-indeno(5,4-b)furan-8-yl]ethyl)acetamide] were evaluated by use of cell-free binding and cell-based functional assays. <b><i>Results:</i></b> Competition binding assays using 2-[<sup>125</sup>I]iodomelatonin revealed rapid, reversible, and high-affinity binding of compound 1 to human, mouse, and rat MT<sub>2</sub> melatonin receptors. cAMP, ERK1/2, and PathHunter β-arrestin recruitment assays revealed partial agonist activities. However, compound 1 induced a more intense internalization of human MT<sub>2</sub> melatonin receptor than melatonin. Based on studies using structurally related analogs of compound 1, we further demonstrated that the extent of internalization is independent of the intrinsic efficacy of agonists. <b><i>Conclusion:</i></b> These findings provide novel insights into the relationship between intrinsic agonist efficacy and agonist-induced internalization and demonstrate that compound 1 could serve as a pharmacological tool for future studies to elucidate the detailed molecular mechanism of MT<sub>2</sub> receptor internalization.
DOI: 10.17632/ngvb8zhbrm
title: Mechanical and Elastic Wave Responses of Rocks Subjected to Cyclic Tensile Stresses

description: The mechanical data include the complete stress-strain curves as well as the values at specific measurement points. The wave data consist of the original waveforms recorded at the measurement points, along with wave attributes such as frequency and wave velocity derived from these waveforms.
DOI: 10.6084/m9.figshare.16458708.v1
title: Waikato River (2006).

description: Waikato River electro-fishing survey (2006).<br><br><b>Type of waterbody:</b> River<br><br><b>Variables:</b> Black Disc; EF % range; EF Range; EF current; EF pulse rate; Fish Species Counts; Specific Conductance; Time fished; Water Temperature<br><br><b>Start date:</b> 2006-08-04<br><br><b>End date:</b> 2006-11-21<br><br><b>Region:</b> Waikato<br><br><b>River:</b> Waikato River<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.27170187.v1
title: Intranasal Insulin for the Treatment of Olfactory Dysfunction: a protocol for a Systematic Review and Meta-Analysis

description: This study is to evaluate the effectiveness and safety of intranasal insulin in the treatment of olfactory dysfunction
DOI: 10.17632/shv89y2zzd
title: Dataset of observables for UOX and MOX spent fuel extracted from Serpent2 fuel depletion calculations for Pressurized Water Reactors

description: This database contains information on the isotopic mass density and its contribution to activity, decay heat, photon emission, spontaneous fission rate, (alpha,n) reaction rate and radiotoxicity of 150 nuclides present in nuclear fuel that has been irradiated in PWRs. These nuclides are crucial for characterizing nuclear waste and analyzing fuel cycles. The values in the database were obtained through depletion calculations based on a representative 3D cuboid model of a fuel pin-cell, using the Monte Carlo reactor physics burn-up calculation code Serpent2 version 2.2.0, along with state-of-the-art nuclear data libraries and methods.

 The calculations cover a wide range of burn-up levels for conventional PWRs (0 to 70 MWd/KgHM), and take into account both UOX and MOX fuel. The range of initial enrichment for UOX and initial plutonium content is also considered, i.e., 1.5% to 6.0% enrichment for UOX and 4% to 12% of initial plutonium + americium content (over the heavy metal). Additionally, different Pu isotopic composition vectors are considered within the range of reactor-grade (RG) plutonium.

 To make this resource widely available, the database has been made publicly accessible. It is particularly useful for waste and fuel characterization, nuclear safeguards, and radiation protection applications. By providing access to the data contained in this database, other potential users can save time and avoid the complexities associated with performing similar calculations. Moreover, this database serves as a valuable dataset for model training in machine learning applications related to nuclear science and engineering.
DOI: 10.6084/m9.figshare.18094277.v1
title: Distinct size dependence and diurnal variation of OA hygroscopicity, volatility, and CCN activity at a rural site in the Pearl River Delta (PRD) region, China

description: This is a data set from a field campaign carried out during November and December at a rural site in the Pearl River Delta region, China. It includes particle number size distribution, particle hygroscopicity, particle volatility, chemical composition, PMF result, CCN number concentration, PM2.5 concentration, wind direction, and wind speed.
DOI: 10.6084/m9.figshare.22237519.v2
title: Using the Brief Emotional Experience Scale (BEES) for mental health screening in schools

description: Raw data files for article titled 'Using the Brief Emotional Experience Scale (BEES) for mental health screening in schools'<br>
DOI: 10.6084/m9.figshare.26935579.v1
title: Supplementary Material for: Selection of the Most Suitable Culture Medium for Patient-Derived Lung Cancer Organoids

description: Introduction
Patient-derived organoids have emerged as a promising in vitro model for precision medicine, particularly in cancer, but also in non-cancer-related diseases. However, the optimal culture medium for culturing patient-derived lung organoids has not yet been agreed upon. This study aimed to shed light on the optimal selection of a culture media for developing studies using patient-derived lung organoids.
Methods
Tumor and normal paired tissue from 71 resected non-small cell lung cancer patients were processed for organoid culture. Lung cancer organoids (LCOs) were derived from tumor tissue and normal lung organoids (LNOs) from non-neoplastic lung tissue. Three different culture media were compared: Permissive culture medium (PCM); Limited culture medium (LCM); and Minimum basal medium (MBM). We assessed their effectiveness in establishing organoid cultures, promoting organoid growth and viability, and compared their differential phenotypic characteristics.
Results
While PCM was associated with the highest success rate and useful for long-term expansion, MBM was the best option to avoid normal organoid overgrowth in the organoid culture. The density, size, and viability of LNOs organoids were reduced using LCM and severely affected with MBM. LNOs cultured in PCM tend to differentiate to bronchospheres, while alveolosphere differentiation can be observed in those cultured with LCM. The morphological phenotype of LCO was influenced by the culture media of election. Mesenchymal cell overgrowth was observed when LCM was used.
Conclusion
This work highlights the importance of considering the research objectives when selecting the most suitable culture medium for growing patient-derived lung organoids.
DOI: 10.6084/m9.figshare.28498064.v1
title: Effects of litter addition on plant performance and ecosystem functions: a global meta-analysis

description: Dateset and R code for "Effects of litter addition on plant performance and ecosystem functions: a global meta-analysis"
DOI: 10.11583/dtu.24955050.v1
title: Stream results data for FOAK-to-NOAK e-ammonia plant configurations

description: This data file provides additional simulation results for the manuscript entitled "<b>Quantifying environmental learning and scaling rates for prospective life cycle assessment of e-ammonia production</b>". This data file contains chemical process design simulation results for e-ammonia production at various scales ranging from 2 to 100 t eNH<sub>3</sub> h<sup>-1</sup>. Simulation results were generated using the ASPEN Plus V11 simulator. Each Excel tab is dedicated to one specific e-ammonia production plant configuration. FOAK = First-Of-A-Kind technology, NOAK = N<sup>th</sup>-Of-A-Kind technology. This data file specifies the stream composition of every stream defined in Figure S1 flowchart in the Supplementary information. Data were grouped to "Air separation unit (ASU) and ammonia synthesis" and "Alkaline Water Electrolysis (AWE) unit" sections. The detailed stream properties are the following: the path of stream connections, phase, temperature, pressure, molar vapor fraction, molar liquid fraction, molar solid fraction, mass vapor fraction, mass liquid fraction, mass solid fraction, molar enthalpy, mass enthalpy, molar entropy, mass entropy, molar density, mass density, enthalpy flow, average molecular weight, mole flows for components, mole fractions for components, mass flows for components, mass fractions for components, volume flow.
DOI: 10.6084/m9.figshare.11634321.v3
title: Supplementary Tables and Supplementary Information

description: Supplementary Tables and the Supplementary Information file for Shaiber et al (2020).
DOI: 10.6084/m9.figshare.12998795.v1
title: aggr person level 2

description: Data aggregated at the level of a person, for the repeated measures design
DOI: 10.6084/m9.figshare.13545973.v1
title: Additional file 4 of Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria

description: Additional file 4: Table S3. List of differentially expressed genes in P. oligofermentans.
DOI: 10.6084/m9.figshare.4632682.v1
title: HIF Tamil Nadu Data

description: Data from published paper on Disaster Microinsurance in PLOS Currents Disasters for Tamil Nadu.
DOI: 10.6084/m9.figshare.6115313.v1
title: Neisseria pipeline output reports

description: Output reports of the <i>Neisseria</i> pipeline for all samples and runs of the validation.
DOI: 10.6084/m9.figshare.6470726.v1
title: Semantic Question Classification Datasets

description: This is the datasets used in the following paper:<br><b>Can Taxonomy Help? Improving Semantic Question Matching using Question Taxonomy</b><br><br>Paper: http://aclweb.org/anthology/C18-1042<br>If you use the dataset please cite the following paper:<br><pre>@InProceedings{C18-1042, author = "Gupta, Deepak and Pujari, Rajkumar and Ekbal, Asif and Bhattacharyya, Pushpak and Maitra, Anutosh and Jain, Tom and Sengupta, Shubhashis", title = "Can Taxonomy Help? Improving Semantic Question Matching using Question Taxonomy", booktitle = "Proceedings of the 27th International Conference on Computational Linguistics", year = "2018", publisher = "Association for Computational Linguistics", pages = "499--513", location = "Santa Fe, New Mexico, USA", url = "http://aclweb.org/anthology/C18-1042" } </pre><br>
DOI: 10.17632/4v663mfwk3
title: Renewable Ammonia Production- Optimization Model

description: We develop a linear cost minimization model (in Python) based on hourly energy supply and demand from system components for all-electric ammonia production from solar energy.
DOI: 10.6084/m9.figshare.28704722.v1
title: Victoria_enrol1.csv

description: The data collected between 2017 and 2021 includes Full Time Equivalent (FTE) enrolments by school type, year level, and sex for each school. Victorian schools provide enrolment details twice a year. The first collection takes place in February, and the data gathered is used for government school resource allocation. Non-government school data is also used for system-wide reporting. The second collection occurs in August, and this data is used both for school resource allocation and for inclusion in state and national statistical reports. It is important to note that non-government schools submit their August data directly to the Commonwealth for these purposes.4o mini
DOI: 10.17632/cgp7jbwghm
title: Single crystal X-ray diffraction data for Al3Fe

description: Single crystal X-ray diffraction data for Al3Fe related to CCDC: 1967090. Data collected by four circle diffactometer Burker D8 Venture.