cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26838838.v4
title: Exploration-Exploitation Trade-off in Individuals with Binge Eating Disorder (BED) in Two Behavioral Paradigms Search

description: Have you ever wondered why some people struggle with binge eating?<br>This study looks at how people with Binge Eating Disorder (BED) make decisions about food compared to others. We found that individuals with BED tend to be more exploratory in their choices, often seeking new options rather than sticking with familiar ones. This behavior might explain why they find it hard to maintain consistent eating patterns. Our research used special computer tasks to measure how people balance exploring new choices versus exploiting known rewards. We compared three groups: people with BED, obese individuals without BED, and normal-weight individuals.<br>Interestingly, when people with BED followed a controlled diet for three months, their decision-making patterns changed to become more like those without the disorder. This suggests that both what we eat and how we think about food play important roles in binge eating behaviors. Understanding these decision-making processes could help develop better treatments for BED, potentially improving the lives of many who struggle with this challenging condition.
DOI: 10.6084/m9.figshare.27652932.v1
title: Dataset for Bimbard et al., 2024

description: Dataset for the paper "An adaptable, reusable, and light implant for chronic Neuropixels probes".Contains the data to replicate most figures of the paper. "data_Bimbard2024" contains the main data. "expInfoAll" is a matlab structure that contains, for each of the 3535 recordings, the subject, experiment date, etc. In particular, "dataSpikes" contains all the information about individual clusters found in each recording, including their quality metrics.The "RMS" folder contains the RMS for all channels, for all the recordings saved Companion code here to generate the figures.
DOI: 10.6084/m9.figshare.6833927.v1
title: Supplementary Material for: HCC Immune Surveillance and Antiviral Therapy of Hepatitis C Virus Infection

description: <b><i>Objective:</i></b> HCV clearance by current antiviral therapies improves clinical outcomes but falls short in eliminating the risk for hepatocellular carcinoma (HCC) emergence. As the HCC immune surveillance establishment is vital for the control of neoplastic development and growth, we investigated its correlation with on-/post-treatment HCC emergence, and further analyzed the influence of viral eradication on this setup in patients with HCV-related liver cirrhosis. <b><i>Design:</i></b> PBMC isolated at baseline and longitudinally during therapy were analyzed for tumor-associated antigen (TAA)-specific CD8+ T cell responses against glypican-3 overlapping peptides in vitro using high-definition flow cytometry. Multianalyte profiling of fifty soluble inflammatory mediators (SIM) in the plasma was also performed using Luminex-based multiplex technology. <b><i>Results:</i></b> Cirrhosis patients were characterized by an altered profile of distinct SIMs at baseline. At this time point, immune-surveilling T cells targeting specific HCC-associated antigens were readily detectable in HCV-free cirrhosis patients whilst being rather weak in such patients who further developed HCC upon virus eradication. Therapy-induced cure of HCV infection analogously reduced the strength of the prevailing HCC immune surveillance machinery, particularly by CD8+ T cells in cirrhosis patients. These results were further validated by T cell reactivities to six immuno-dominant HCC-associated HLA-A2-restricted epi­topes. Further, we demonstrated that this phenomenon was likely orchestrated by alterations in SIMs – with evidence of IL-12 being a major culprit. <b><i>Conclusion:</i></b> Given the relationship between the baseline HCC-specific immune surveilling T cell responses and therapy-associated HCC emergence, and the impact of HCV clearance on its strength and magnitude, we recommend a continued HCC screening in cirrhotic HCV patients despite HCV resolution.
DOI: 10.6084/m9.figshare.1594239.v1
title: Polistes dominula genome annotation

description: This data set is part of the <em>Polistes dominula</em> genome project, and details the annotation of protein coding genes and tRNA genes in the <em>P. dominula</em> genome, as described in (Standage <em>et al.</em>, <i>Molecular Ecology</i>, 2016). Included in this data set are the annotations (gene models in GFF3 format), gene model translations (peptide sequences in Fasta format), and documentation providing complete disclosure of the annotation workflow.
DOI: 10.6084/m9.figshare.6137672.v9
title: Planet and host star properties

description: Planet and host star properties for every detected planet in our simulation. Table 2 from "A Revised Exoplanet Yield from the Transiting Exoplanet Survey Satellite (TESS)", Barclay, Pepper and Quintana, 2018.
DOI: 10.17632/gdtph3djd5
title: Supplemental Figure 9

description: Supplemental Figure 9: Fitzpatrick skin type II, child with an astrocytoma treated with MEK inhibitor selumetinib. Great toenail with paronychia and serous discharge.
DOI: 10.17632/jjrbym4swn
title: Data for: Persistence dynamics of pyrogenic particulate organic matter in different soil profile layers with varying water table levels

description: Raw data for all figures in the manuscript to be published by Geochimica et Cosmochimica Acta as "Persistence dynamics of pyrogenic particulate organic matter in different soil profile layers with varying water table levels".
DOI: 10.6084/m9.figshare.12739160.v4
title: Data about power and gas system.xlsx

description: The attahed file includes the data of a coupled electric and gas networks.
DOI: 10.6084/m9.figshare.1466782.v2
title: Women’s preferences for penis size may affect men’s comfort with their own bodies and may have implications for sexual health. Studies of women’s penis size preferences typically have relied on their abstract ratings or selecting amongst 2D, flaccid image

description: Women’s preferences for penis size may affect men’s comfort with their own bodies and may have implications for sexual health. Studies of women’s penis size preferences typically have relied on their abstract ratings or selecting amongst 2D, flaccid images. This study used haptic stimuli to allow assessment of women’s size recall accuracy for the first time, as well as examine their preferences for erect penis sizes in different relationship contexts. Women (N = 75) selected amongst 33, 3D models. Women recalled model size accurately using this method, although they made more errors with respect to penis length than circumference. Women preferred a penis of slightly larger circumference and length for one-time (length = 6.4 inches/16.3 cm, circumference = 5.0 inches/12.7 cm) versus long-term (length = 6.3 inches/16.0 cm, circumference = 4.8 inches/12.2 cm) sexual partners. These first estimates of erect penis size preferences using 3D models suggest women accurately recall size and prefer penises only slightly larger than average.
DOI: 10.6084/m9.figshare.22471912.v1
title: Data files

description: This data was gathered from published studies. In some cases, unit conversion was reruired for harmonization.
DOI: 10.6084/m9.figshare.26992219.v1
title: Additional file 3 of BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites

description: Additional file 3: Supplementary Table S2. The overlapping of BORIS binding sites identified in K562 cells with CAGE-seq data obtained from both K562 and testes samples.
DOI: 10.6084/m9.figshare.5127127.v1
title: Supplementary Material for: Maternal Immune Activation Induces Changes in Myelin and Metabolic Proteins, Some of Which Can Be Prevented with Risperidone in Adolescence

description: <b><i>Background:</i></b> Maternal infection is a risk factor for schizophrenia but the molecular and cellular mechanisms are not fully known. Myelin abnormalities are amongst the most robust neuropathological changes observed in schizophrenia, and preliminary evidence suggests that prenatal inflammation may play a role. <b><i>Methods:</i></b> Label-free liquid chromatography-mass spectrometry was performed on the prefrontal cortex (PFC) of adult rat offspring born to dams that were exposed on gestational day 15 to the viral mimic polyinosinic:polycytidylic acid [poly(I:C), 4 mg/kg] or saline and treated with the atypical antipsychotic drug risperidone (0.045 mg/kg) or saline in adolescence. Western blotting was employed to validate protein changes. <b><i>Results:</i></b> Over 1,000 proteins were quantified in the PFC with pathway analyses implicating changes in core metabolic pathways, following prenatal poly(I:C) exposure. Some of these protein changes were absent in the PFC of poly(I:C)-treated offspring that subsequently received risperidone treatment in adolescence. Particularly interesting reductions in the expression of the myelin-related proteins myelin basic protein isoform 3 (MBP1) and rhombex 29 were observed, which were reversed by risperidone treatment. Validation by Western blotting confirmed changes in MBP1 and mitogen-activated kinase 1 (MAPK1). Western blotting was extended to assess the MAPK signalling proteins due to their roles in inflammation, namely phosphorylated MAPK1 and phosphorylated MAPK-activated protein kinase 2. Both were upregulated by poly(I:C) treatment and reversed by risperidone treatment. <b><i>Conclusions:</i></b> Overall, our data suggest that maternal inflammation may contribute to an increased risk for schizophrenia through mechanisms involving metabolic function and myelin formation and that risperidone in adolescence may prevent or reverse such changes.
DOI: 10.6084/m9.figshare.19397930.v1
title: Forest biomass turnover time estimation in China based on spatially explicit root:shoot ratios

description: The repository contains: 1.Dataset of stand-level/plot-level root:shoot ratios (R:S) for China, compiled from field measurements; 2.Dataset with plot coordinates, stand age, R:S, data source, and a reference for each individual data record; 3.Spreadsheet of dataset sources of 1,907 R:S field data measurements; 4.Spreadsheet of references from Luo et al (2014), listing 396 published references cited by Luo et al. (2014); 5.Spreadsheet of references from Wang et al (2014), listing 55 published references cited by Wang et al. (2014).
DOI: 10.6084/m9.figshare.23497997.v1
title: STATA data sheet

description: These are the STATA data sheets imported from excel. These are used directly for meta-analysis
DOI: 10.6084/m9.figshare.25194665.v1
title: Supporting Data for article Single-pixel p-graded-n junction sectrometers

description: The dataset for article Single-pixel p-graded-n spectrometers
DOI: 10.6084/m9.figshare.28926377.v1
title: Research data

description: The research is about medical health perspectives on the current health indicators in Iraqi Kurdistan Region.
DOI: 10.6084/m9.figshare.12860912.v1
title: Indices of Space Physics

description: indices of Dst, Kp, F10.7 inSeptember and October, 2013
DOI: 10.6084/m9.figshare.16997914.v1
title: The crustal and uppermost mantle dynamics of the Tengchong-Baoshan region revealed by P-wave velocity and azimuthal anisotropic tomography

description: Data/receivers
DOI: 10.6084/m9.figshare.21754973.v2
title: Algal bloom in China lakes

description: This dataset includes the algal bloom information in many small China lakes.
DOI: 10.6084/m9.figshare.23634000.v1
title: Influence of tree cover on carcass detection and consumption by facultative vertebrate scavengers

description: We studied whether the carcass detection and consumption, hence carcass decomposition speed, by facultative avian and mammalian scavengers varies with tree cover in areas without vultures. Fresh mammal carcasses were placed in different landscapes across the Netherlands at locations that widely varied in tree cover. Camera traps were used to record carcass exploitation by facultative avian and mammalian scavengers and to estimate carcass decomposition time.
DOI: 10.6084/m9.figshare.12782138.v2
title: Modifiable set of ESRI ArcMap-10 shape-lyr-style files implementing the Romanian color standard for soil type map legends

description: In order to use the Romanian color standard for soil type map legends, a dataset of ESRI ArcMap-10 files, consisting of a shapefile set (.dbf, .shp, .shx, .sbn, and .sbx files), four different .lyr files, and three different .style files (https://desktop.arcgis.com/en/arcmap/10.3/map/ : saving-layers-and-layer-packages, about-creating-new-symbols, what-are-symbols-and-styles-), have been prepared. The shapefile set is not a “real” georeferenced layer/coverage; it is designed only to handle all the instants of soil types from the standard legend. This legend contains 67 standard items: 63 proper colors (different color hues, each of them having, generally, 2 - 4 degrees of lightness and/or chroma, four shades of grey, and white color), and four hatching patterns on white background. The “color difference DE*<sub>ab</sub>” between any two legend colors, calculated with the color perceptually-uniform model CIELAB, is greater than 10 units, thus ensuring acceptably-distinguishable colors in the legend. The 67 standard items are assigned to 60 main soils existing in Romania, four main nonsoils, and three special cases of unsurveyed land. The soils are specified in terms of the current Romanian system of soil taxonomy, SRTS-2012+, and of the international system WRB-2014. The four different .lyr files presented here are: <i>legend_soilcode_srts_wrb.lyr</i>, <i>legend_soilcode_wrb.lyr</i>, <i>legend_colorcode_srts_wrb.lyr,</i> and <i>legend_colorcode_wrb.lyr</i>. The first two of them are built using as value field the “Soil_codes” field, and as labels (explanation texts) the “Soil_name” field (storing the soil types according to SRTS/WRB classification), respectively, the “WRB” field (the soil type according to WRB classification), while the last two .lyr files are built using as value field the “color_code” field (storing the color codes) and as labels the soil name in SRTS and WRB, respectively, in WRB classification. In order to exemplify how the legend is displayed, two .jpg files are also presented: <i>legend_soil_srts_wrb.jpg </i>and <i>legend_color_wrb.jpg</i>. The first displays the legend (symbols and labels) according to the SRTS classification order, the second according to the WRB classification. The three different .style files presented here are: <i>soil_symbols.style</i>, <i>wrb_codes.style, </i>and <i>color_codes.style</i>. They use as name the soil acronym in SRTS classification, soil acronym in WRB classification, and, respectively, the color code. The presented file set may be used to directly implement the Romanian color standard in digital soil type map legends, or may be adjusted/modified to other specific requirements.
DOI: 10.6084/m9.figshare.18978428.v1
title: Dataset: Intra-Company Crowdsensing: Datafication with Human-in-the-Loop.

description: <b>Intra-Company Crowdsensing: Datafication with Human-in-the-Loop </b>(Dataset).<b><br></b><b>Abstract: </b>Every day employees learn about things happening in their company. This includes plain facts witnessed while on the job, related or not to one’s job responsibilities. Many of these facts, which we call “occurrence data,”, are known by employees but remain unknown to the company. We suppose that some of them are valuable and may improve the company’s situational awareness. In the spirit of mobile crowdsensing, we propose intra-company crowdsensing (ICC), a method to of “extracting” occurrence data from employees. In ICC, an employee occasionally responds to sensing requests, each about one plain fact. We elaborate the concept of ICC, proposing a model of human-system interaction, a system architecture, and an organizational process. We position ICC with respect to related concepts from information technology, and we look at it from selected organizational and managerial viewpoints. Finally, we conducted a survey, in which we presented the concept of ICC to employees of different companies and asked for their evaluation. Respondents positive about ICC outnumbered skeptics by a wide margin. The survey also revealsed some concerns, mostly related to ICC being perceived as another employee surveillance tool. However, useful and acceptable sensing requests are likely to be found in every organization.<br>--------------------------<b>Online Questionnaire</b> The survey was conducted as a computer-assisted web interview (CAWI). We started with a short pilot phase and noticed that a number of pilot respondents had mistakenly understood that ICC covered not just plain facts, but also opinions or interpretations. To avoid the confusion, we explained the concept more clearly in the introduction to the questionnaire and added reminders to some of its questions. It took about fifteen minutes to complete the revised questionnaire. We used non-probabilistic, convenience sampling. An invitation to the survey was distributed via the newsletter of the Centre for Innovation and Technology Transfer Management at Warsaw University of Technology as well as via social media. We stressed that we were seeking respondents with work experience.------------------------<br>
DOI: 10.6084/m9.figshare.22591846.v1
title: Game theory risk model (case 1,2).xlsx

description: The excel file provides the data to develop the contigency cost module to be shared using cooperative game theory.
DOI: 10.6084/m9.figshare.25975627.v2
title: <b>A Roadmap to The Molecular Human - Linking Multiomics with Population Traits and Diabetes Subtypes</b>

description: In-depth multiomic phenotyping provides molecular insights into complex physiological processes and their pathologies. Here, we report on integrating 18 diverse deep molecular phenotyping (omics-) technologies applied to urine, blood, and saliva samples from 391 participants of the multiethnic diabetes Qatar Metabolomics Study of Diabetes (QMDiab). Using 6,304 quantitative molecular traits with 1,221,345 genetic variants, methylation at 470,837 DNA CpG sites, and gene expression of 57,000 transcripts, we determine (1) within-platform partial correlations, (2) between-platform mutual best correlations, and (3) genome-, epigenome-, transcriptome-, and phenome-wide associations. Combined into a molecular network of &gt; 34,000 statistically significant trait-trait links in biofluids, our study portrays “The Molecular Human”. We describe the variances explained by each omics in the phenotypes age, sex, BMI, and diabetes state, platform complementarity, and the inherent correlation structures of multiomics data. Further, we construct multi-molecular network of diabetes subtypes. Finally, we generated an open-access web interface to “The Molecular Human” (http://comics.metabolomix.com), providing interactive data exploration and hypotheses generation possibilities.<i></i><i></i>Reply<i></i>ForwardNS<br>
DOI: 10.6084/m9.figshare.3084172.v1
title: Impact of the phoretic phase on reproduction and damage caused by Varroa destructor to the European Honey Bee. raw_data.xlsx

description: We investigated if the type of bees on which <i>Varroa</i> stays during the phoretic phase and if the duration of this stay influenced the reproductive success of the parasite and the damage caused to bees. For that purpose, we used an <i>in vitro</i> rearing method developed in our laboratory to assess egg laying rate and the presence and number of fully molted daughters. The expression level of two <i>Varroa</i> vitellogenin genes (VdVg1 and VdVg2), known to vary throughout reproduction, was also quantified. Results showed that the status of the bees or time spent during the phoretic phase impacts neither reproduction parameters nor the <i>Varroa</i> vitellogenin genes levels of expression. However, we correlated these parameters to the gene expression and demonstrated that daughters expressed the vitellogenin genes at lower levels than their mother. Regarding the damage to bees, the data indicated that a longer stay on adult bees during the phoretic phase resulted in more frequent physical deformity in newborn bees. We showed that those mites carry more viral loads of the Deformed Wing Virus and hence trigger more frequently overt infections. This study provides new perspectives towards a better understanding of the <i>Varroa</i>-honeybee interactions.
DOI: 10.17632/5ssw77y54n
title: Data Extraction from Montesquieu's Persian Letters and Code for the Article "Literary study of the most common objects through a statistical AI-driven analysis of Montesquieu’s Persian Letters"

description: This dataset is supplementary to the article "Literary study of the most common objects through a statistical AI-driven analysis of Montesquieu’s Persian Letters" and includes comprehensive processes and results of extracting, processing, and analyzing the letters through the integration of digital humanities and traditional literary analysis. The data presented in this dataset includes:

Table S1:
Final Letter Categorization: This table contains the final categorization of 161 letters from Persian Letters based on literary features, as extracted from a Large Language Model (LLM) API.
Table S1 Contents includes:
1. Letter Number: Unique identifier for each letter.
2. Sender: The individual or entity who sent the letter.
3. Receiver: The individual or entity who received the letter.
3. Object: The primary subject or focus of the letter.
4. Theme: The underlying theme or message conveyed in the letter.
5. Mode: The mode of communication or expression used in the letter.
6. Tone: The emotional tone or attitude present in the letter.
7. Comparative Mode: the comparative communication mode across different argumentations and ideas.
8. Character Count: The total number of characters in each letter.
9. Object First Word: The first word of the primary object in the letter.

Code.Word:
Workflow Documentation: This file details the processes involved in extracting, processing, and analyzing letters from Persian Letters. It includes Python scripts and workflows covering:
Extracting Letter Titles
Combining Letters into a DataFrame
Character and Word Count Analysis
Generating Prompts and Saving Responses
Parsing Responses to Extract Answers
Visualization and Analysis

This dataset supports the main article by providing new insights into Montesquieu's narrative techniques and thematic explorations within Persian Letters. It demonstrates how digital tools like natural language processing (NLP) and data analysis can uncover deeper meanings in classic literary works, offering new perspectives on the structure and narrative strategies employed by Montesquieu through his work.