cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17780226
title: Reassessment of the global distribution and diversity of modern planktonic Foraminifera (FORCIS) — Analysis code

description: Description

This repository contains R code to reproduce the analyses and figures for the manuscript “Reassessment of the global distribution and diversity of modern planktonic Foraminifera from the FORCIS database.”The scripts quantify global biogeographic patterns of 26 dominant morphospecies since 1970 using the FORCIS database: (i) species distributions from presence-rate histograms and thresholding, (ii) basin-scale diversity (richness, Shannon), (iii) rarity metrics, (iv) vertical habitat metrics (depth of maximum abundance, and abundance-weighted in 0–200 m), and (v) thermal preferences from EN4.2.1 temperatures (0–100 m). Sensitivity analyses address taxonomy/mesh-size harmonization and α-threshold selection.

Scripts written by Sonia Chaabane.

Code included (scripts)





Species_distribution.R — global presence/absence gridding & maps




Presence rate histograms_Thresholds_allshellscounted.R — presence-rate by latitude (full assemblage counted) + binomial SE




Presence rate histograms_Thresholds.R — α-threshold sweep (0.10–0.30) and selection (α = 0.20)




Diversity analyses.R — assemblage matrices, ordinations/clustering, basin stratification




Diversity indexes.R — species richness & Shannon vs latitude (global and per basin)




Thermal preferences.R — species temperature niches (box/violin/heatmaps) from normalized abundances




Depth habitat.R — DMAX & AOD per species/basin; Welch ANOVA + Games–Howell; basin-to-basin DMAX correlation heatmaps




Thermal preferences by ocean basin.R — basin-resolved thermal niches with habitat coloring




Presence rate histograms_fine fraction.R — fine-fraction sensitivity to sampling strategy



Data sources (not redistributed here)





FORCIS database: https://doi.org/10.5281/zenodo.7390791




PF abundance mesh-size normalization (to 100 µm): https://doi.org/10.5281/zenodo.10750545



Software & requirements





R ≥ 4.2 (tested on 4.3.x)




Packages: dplyr, tidyr, readr, openxlsx, ggplot2, viridis, vegan, reshape2, ggExtra, purrr, rstatix, patchwork, gridExtra
DOI: 10.5281/zenodo.17780225
title: Reassessment of the global distribution and diversity of modern planktonic Foraminifera (FORCIS) — Analysis code

description: Description

This repository contains R code to reproduce the analyses and figures for the manuscript “Reassessment of the global distribution and diversity of modern planktonic Foraminifera from the FORCIS database.”The scripts quantify global biogeographic patterns of 26 dominant morphospecies since 1970 using the FORCIS database: (i) species distributions from presence-rate histograms and thresholding, (ii) basin-scale diversity (richness, Shannon), (iii) rarity metrics, (iv) vertical habitat metrics (depth of maximum abundance, and abundance-weighted in 0–200 m), and (v) thermal preferences from EN4.2.1 temperatures (0–100 m). Sensitivity analyses address taxonomy/mesh-size harmonization and α-threshold selection.

Scripts written by Sonia Chaabane.

Code included (scripts)





Species_distribution.R — global presence/absence gridding & maps




Presence rate histograms_Thresholds_allshellscounted.R — presence-rate by latitude (full assemblage counted) + binomial SE




Presence rate histograms_Thresholds.R — α-threshold sweep (0.10–0.30) and selection (α = 0.20)




Diversity analyses.R — assemblage matrices, ordinations/clustering, basin stratification




Diversity indexes.R — species richness & Shannon vs latitude (global and per basin)




Thermal preferences.R — species temperature niches (box/violin/heatmaps) from normalized abundances




Depth habitat.R — DMAX & AOD per species/basin; Welch ANOVA + Games–Howell; basin-to-basin DMAX correlation heatmaps




Thermal preferences by ocean basin.R — basin-resolved thermal niches with habitat coloring




Presence rate histograms_fine fraction.R — fine-fraction sensitivity to sampling strategy



Data sources (not redistributed here)





FORCIS database: https://doi.org/10.5281/zenodo.7390791




PF abundance mesh-size normalization (to 100 µm): https://doi.org/10.5281/zenodo.10750545



Software & requirements





R ≥ 4.2 (tested on 4.3.x)




Packages: dplyr, tidyr, readr, openxlsx, ggplot2, viridis, vegan, reshape2, ggExtra, purrr, rstatix, patchwork, gridExtra
DOI: 10.7910/dvn/afruj8
title: Building electrical load data and weather data in Shenzhen city, China

description: This dataset includes the electrical load data from 141 buildings (5 types) and weather data in Shenzhen city, China
DOI: 10.17026/ar/zjllf3
title: PAN-00173260 - devotional pendant Modern period

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00173260&lt;/p&gt;
description: Modified: 2025-04-26T11:25:54+02:00
DOI: 10.6084/m9.figshare.28295999
title: Data for "Drivers of phenolic concentration across global drylands

description: My research investigates how environmental factors like climatic variables and grazing influence plant phenolics in global drylands. By examining both herbaceous and woody species, I aim to understand the role of phenolics in plant defence strategies and their trade-offs with growth.
DOI: 10.6084/m9.figshare.28295999.v1
title: Data for "Drivers of phenolic concentration across global drylands

description: My research investigates how environmental factors like climatic variables and grazing influence plant phenolics in global drylands. By examining both herbaceous and woody species, I aim to understand the role of phenolics in plant defence strategies and their trade-offs with growth.
DOI: 10.21223/p3/7drqqz
title: Dataset for: Assessment of grassland condition, Forage availability

description: The study was conducted in the community of Picotani, in two vicuña management sectors: Tambojarkas (TAM) and Chalhuani (CHAL). A total of 10 sites were evaluated, 7 within Chalhuani and 3 within Tambojarkas. In each site, three 30-meter linear transects were established, oriented to the north, southeast, and southwest. Along each transect, characteristics related to grasses and vegetation cover in the area were assessed, ranging from areas with low cover (due to overgrazing) to areas with high vegetation cover (less impacted sites). To assess forage availability in the grasslands, five subunits (1 m² quadrats) were evaluated, aiming to determine the degree of cover and the amount of plant material present in them.
DOI: 10.60681/whg-collection-241
title: The Spread Of Islam into Central Asia

description: This collection follows the spread of Islam across Central Asia from the 7th to the 10th centuries.  Major cities along the Silk Road served as hubs for education and cultural exchange, allowing Islamic ideas to spread far beyond Arabia. By looking at the locations of Merv, Bukhara, Samarkand, Balkh, and Kashgar, we see how landscapes and trade influenced the diffusion of religion across a diverse and challenging environment.
DOI: 10.15468/dl.pf9dm5
title: Occurrence Download

description: A dataset containing 375 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Haiti",
 "OccurrenceStatus is Present",
 "TaxonKey is Primulaceae"
 ]
}

 The dataset includes 375 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020713-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zv8afx
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 {
 "or" : [
 "DatasetKey is one of (NABU|naturgucker, Flora von Deutschland (Phanerogamen), VegetWeb - Repositorium von Vegetationsaufnahmen, Insekten Sachsen, iNaturalist Research-grade Observations, Harmonised freshwater fish occurrence and abundance data for 12 federal states in Germany, Observation.org, Nature data from around the World, EOD – eBird Observation Dataset, The Spider Collection at the Staatliches Museum für Naturkunde Karlsruhe, Neuropteren Deutschlands (Neuropterida of Germany), ArtenFinder, Occurrence Data of Vascular Plants collected or compiled for the Flora of Bavaria, Floristic records from survey studies of the Bayerisches Landesamt für Umwelt, Historical Vertebrate Distributions in Bavaria 1845, Biodiversity data of gravel pit lakes in Northern Germany, Found Animal Survey Germany, Tierfund-Kataster Deutschland (TFK-D))",
 "PublishingOrg is one of (57254bd0-8256-11d8-b7ed-b8a03c50a862, 0674aea0-a7e1-11d8-9534-b8a03c50a862, 10980920-6dad-11da-ad13-b8a03c50a862, 99ea0c90-61e5-11dc-a64c-b8a03c50a862, 463555b0-d081-11da-ae8f-b8a03c50a862, 6e1cad80-bdf5-11d8-84ea-b8a03c50a862, c76cf030-2a95-11da-9cc1-b8a03c50a862, 48490260-8fc0-11dd-be72-b8a03c50a862, 98dbab03-09e5-4ceb-988e-04f3e803decb)",
 "NetworkKey is one of (d1627240-04ab-4162-aee9-b16df6bc8308, 3aee7756-565e-4dc5-b22c-f997fbd7105c)"
 ]
 },
 "Country is Germany",
 {
 "not" : {
 "HasGeospatialIssue" : [
 "is true"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Meles [GBIF Backbone Taxonomy])"
 ]
}

 The dataset's 3 records were derived from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020701-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/vhtmq0
title: Dual Agent-Assisted Writing: An Analysis of Learning Performance, Behavior and Cognition Based on Students’ Critical Thinking Levels

description: This database originates from an educational research study exploring how the “dual-agent-assisted writing” model influences students with varying levels of critical thinking skills.
DOI: 10.15468/dl.xcjywb
title: Occurrence Download

description: A dataset containing 745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paradendryphiella",
 "HasCoordinate is true"
 ]
}

 The dataset includes 745 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020714-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc5xykk
title: CCDC 176779: Experimental Crystal Structure Determination

description: Related Article: D.B.Dell'Amico, F.Calderazzo, L.Labella, F.Marchetti, E.Sbrana|2002|J.Organomet.Chem.|651|52|doi:10.1016/S0022-328X(02)01222-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17545513
title: Impact of the Gas Atmosphere present at the Triple Boundary Phase on the Measured Oxygen Evolution Reaction Electrocatalytic Activity of Ni2B/Ni3B electrocatalysts

description: This dataset contains all raw and processed data supporting the study investigating the electrocatalytic activity of Ni₂B and Ni₃B phases toward the oxygen evolution reaction (OER), and the influence of the surrounding atmosphere at the triple phase boundary on the measured current density.

A Ni₇₀B₃₀ alloy ingot comprising both Ni₂B and Ni₃B phases was locally characterized using scanning electrochemical cell microscopy (SECCM). During measurements, the gas environment surrounding the nanodroplet at the SECCM probe tip was systematically controlled and varied, revealing significant effects of the ambient atmosphere on the recorded electrochemical activity.

All raw SECCM and SEM data withits associated metadata, and post-processing scripts are included to enable full reproducibility and further analysis.
DOI: 10.5281/zenodo.17769623
title: Impact of the Gas Atmosphere present at the Triple Boundary Phase on the Measured Oxygen Evolution Reaction Electrocatalytic Activity of Ni2B/Ni3B electrocatalysts

description: This dataset contains all raw and processed data supporting the study investigating the electrocatalytic activity of Ni₂B and Ni₃B phases toward the oxygen evolution reaction (OER), and the influence of the surrounding atmosphere at the triple phase boundary on the measured current density.

A Ni₇₀B₃₀ alloy ingot comprising both Ni₂B and Ni₃B phases was locally characterized using scanning electrochemical cell microscopy (SECCM). During measurements, the gas environment surrounding the nanodroplet at the SECCM probe tip was systematically controlled and varied, revealing significant effects of the ambient atmosphere on the recorded electrochemical activity.

All raw SECCM and SEM data withits associated metadata, and post-processing scripts are included to enable full reproducibility and further analysis.
DOI: 10.5517/ccdc.csd.cc2bj1jg
title: CSD 2160375: Experimental Crystal Structure Determination

description: Related Article: Yanhao Wang, Mengting Jin, Xuewen Zhao, Mengyue Gu, Jinan Xie, Guodong Meng, Yonghong Cheng, Jinjiang He, Jinying Zhang|2025|CSD Communication|||
description: Related Article: Yanhao Wang, Mengting Jin, Mengyue Gu, Xuewen Zhao, Jinan Xie, Guodong Meng, Yonghong Cheng, Jinjiang He，and  Jinying Zhang*|2023|Nanoscale|15|12406|doi:10.1039/D3NR01113E
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.30745424
title: Genome Wide Structural Variants Provide Insights into Population Structure and Genetic Divergence in Pacific White Shrimp (<i>Litopenaeus vannamei</i>) Breeding Populations

description: Structural variants (SVs) are a major yet underused source of adaptive variation in aquaculture. We built a genome‑wide SV atlas for 180 <i>Litopenaeus vannamei</i> from six commercial breeding populations and discovered 1,159,046 SVs spanning 15 bp to 999 kb, with uneven chromosomal distributions and multi‑type hotspots. Over 45.52% of SVs overlapped repeats—especially simple sequence repeats, DNA transposons, and LINEs. SV and SNP densities were highly correlated. Across populations, 482k SVs were shared and 145,623 were singletons; the fraction of deletions increased from shared to singleton classes. BMK and KH harbored more singletons than SIS, RH and CP, indicating greater divergence. PCA and ADMIXTURE recovered three major clusters and revealed the substructure in RH, mirroring SNP analyses. Selection scans identified 171-274 sweep windows per population encompassing 123-238 candidate genes. Functional enrichment yielded 976 significant GO terms, 90.79% population‑specific, underscoring divergent breeding objectives. Nevertheless, 17 genes showed parallel signals in over 3 populations; many carry short deletions likely affecting regulatory or coding elements. Together, these results show that genome architecture and domestication jointly shape the shrimp SV landscape; that SVs alone robustly resolve population history; and that a small set of recurrent, deletion‑bearing regulatory genes may underpin convergent improvement. The SV map and candidate loci provide diagnostic markers for germplasm tracing and actionable targets for marker‑assisted or genomic selection in <i>L. vannamei </i>breeding.
DOI: 10.6084/m9.figshare.30745424.v2
title: Genome Wide Structural Variants Provide Insights into Population Structure and Genetic Divergence in Pacific White Shrimp (<i>Litopenaeus vannamei</i>) Breeding Populations

description: Structural variants (SVs) are a major yet underused source of adaptive variation in aquaculture. We built a genome‑wide SV atlas for 180 <i>Litopenaeus vannamei</i> from six commercial breeding populations and discovered 1,159,046 SVs spanning 15 bp to 999 kb, with uneven chromosomal distributions and multi‑type hotspots. Over 45.52% of SVs overlapped repeats—especially simple sequence repeats, DNA transposons, and LINEs. SV and SNP densities were highly correlated. Across populations, 482k SVs were shared and 145,623 were singletons; the fraction of deletions increased from shared to singleton classes. BMK and KH harbored more singletons than SIS, RH and CP, indicating greater divergence. PCA and ADMIXTURE recovered three major clusters and revealed the substructure in RH, mirroring SNP analyses. Selection scans identified 171-274 sweep windows per population encompassing 123-238 candidate genes. Functional enrichment yielded 976 significant GO terms, 90.79% population‑specific, underscoring divergent breeding objectives. Nevertheless, 17 genes showed parallel signals in over 3 populations; many carry short deletions likely affecting regulatory or coding elements. Together, these results show that genome architecture and domestication jointly shape the shrimp SV landscape; that SVs alone robustly resolve population history; and that a small set of recurrent, deletion‑bearing regulatory genes may underpin convergent improvement. The SV map and candidate loci provide diagnostic markers for germplasm tracing and actionable targets for marker‑assisted or genomic selection in <i>L. vannamei </i>breeding.
DOI: 10.6084/m9.figshare.30745424.v1
title: Genome Wide Structural Variants Provide Insights into Population Structure and Genetic Divergence in Pacific White Shrimp (<i>Litopenaeus vannamei</i>) Breeding Populations

description: Structural variants (SVs) are a major yet underused source of adaptive variation in aquaculture. We built a genome‑wide SV atlas for 180 <i>Litopenaeus vannamei</i> from six commercial breeding populations and discovered 1,159,046 SVs spanning 15 bp to 999 kb, with uneven chromosomal distributions and multi‑type hotspots. Over 45.52% of SVs overlapped repeats—especially simple sequence repeats, DNA transposons, and LINEs. SV and SNP densities were highly correlated. Across populations, 482k SVs were shared and 145,623 were singletons; the fraction of deletions increased from shared to singleton classes. BMK and KH harbored more singletons than SIS, RH and CP, indicating greater divergence. PCA and ADMIXTURE recovered three major clusters and revealed the substructure in RH, mirroring SNP analyses. Selection scans identified 171-274 sweep windows per population encompassing 123-238 candidate genes. Functional enrichment yielded 976 significant GO terms, 90.79% population‑specific, underscoring divergent breeding objectives. Nevertheless, 17 genes showed parallel signals in over 3 populations; many carry short deletions likely affecting regulatory or coding elements. Together, these results show that genome architecture and domestication jointly shape the shrimp SV landscape; that SVs alone robustly resolve population history; and that a small set of recurrent, deletion‑bearing regulatory genes may underpin convergent improvement. The SV map and candidate loci provide diagnostic markers for germplasm tracing and actionable targets for marker‑assisted or genomic selection in <i>L. vannamei </i>breeding.
DOI: 10.25574/27093
title: Chandra X-ray Observatory ObsId 27093

description: The strangest shell: G310.6-1.6
DOI: 10.15468/dl.a8sgw9
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "TaxonKey is Amolops jaunsari",
 "Year 2011-2025"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020715-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/ltjrfv
title: PAN-00172868 - devotional pendant Modern period

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00172868&lt;/p&gt;
description: Modified: 2025-04-28T15:18:28+02:00
DOI: 10.15468/dl.4k9vm3
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-106300.0",
 "Country is Spain",
 "Geometry POLYGON((-9.27706 43.86833,-10.98502 37.27953,-9.52105 36.02679,-3.76276 35.98731,-0.15164 37.43468,1.21474 39.94809,4.48427 41.68371,3.65469 42.76775,-0.73722 43.12495,-2.0548 43.76269,-4.15316 44.289,-9.27706 43.86833))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (0363cbd4-f666-455e-8e86-0bbddcf51950, cb202839-87c6-456a-821c-dc5b268a200f, 7b4f2f30-a456-11d9-8049-b8a03c50a862, 8209258a-80e8-4094-aba2-a3febe5ed45b, 823818f6-0696-4e29-bc4c-b6f3817535a7, 2522fd75-acb0-424b-8cc9-8d9e9e610d30, 6f3ccc65-0a54-4e65-ae7e-13b92d618e7c)",
 "TaxonKey is Senecio inaequidens"
 ]
}

 The dataset includes 174 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020716-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/hqzz7y
title: Not All Directions Are Equal: Prefrontal EEG and Autonomic Correlates of Directionality in Simultaneous Interpreting

description: Not All Directions Are Equal: Prefrontal EEG and Autonomic Correlates of Directionality in Simultaneous Interpreting
DOI: 10.15468/dl.nrap6h
title: Occurrence Download

description: A dataset containing 4753 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 {
 "or" : [
 "DatasetKey is one of (NABU|naturgucker, Flora von Deutschland (Phanerogamen), VegetWeb - Repositorium von Vegetationsaufnahmen, Insekten Sachsen, iNaturalist Research-grade Observations, Harmonised freshwater fish occurrence and abundance data for 12 federal states in Germany, Observation.org, Nature data from around the World, EOD – eBird Observation Dataset, The Spider Collection at the Staatliches Museum für Naturkunde Karlsruhe, Neuropteren Deutschlands (Neuropterida of Germany), ArtenFinder, Occurrence Data of Vascular Plants collected or compiled for the Flora of Bavaria, Floristic records from survey studies of the Bayerisches Landesamt für Umwelt, Historical Vertebrate Distributions in Bavaria 1845, Biodiversity data of gravel pit lakes in Northern Germany, Found Animal Survey Germany, Tierfund-Kataster Deutschland (TFK-D))",
 "PublishingOrg is one of (57254bd0-8256-11d8-b7ed-b8a03c50a862, 0674aea0-a7e1-11d8-9534-b8a03c50a862, 10980920-6dad-11da-ad13-b8a03c50a862, 99ea0c90-61e5-11dc-a64c-b8a03c50a862, 463555b0-d081-11da-ae8f-b8a03c50a862, 6e1cad80-bdf5-11d8-84ea-b8a03c50a862, c76cf030-2a95-11da-9cc1-b8a03c50a862, 48490260-8fc0-11dd-be72-b8a03c50a862, 98dbab03-09e5-4ceb-988e-04f3e803decb)",
 "NetworkKey is one of (d1627240-04ab-4162-aee9-b16df6bc8308, 3aee7756-565e-4dc5-b22c-f997fbd7105c)"
 ]
 },
 "Country is Germany",
 {
 "not" : {
 "HasGeospatialIssue" : [
 "is true"
 ]
 }
 }
 ]
 },
 {
 "and" : [
 "DatasetKey is one of (Found Animal Survey Germany, Tierfund-Kataster Deutschland (TFK-D))",
 "TaxonKey is one of (Meles meles [GBIF Backbone Taxonomy])"
 ]
 }
 ]
}

 The dataset includes 4753 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020717-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/wctaij
title: Replication data for: Do Well Managed Firms Make Better Forecasts?

description: Nicholas Bloom, Takafumi Kawakubo, Charlotte Meng, Paul Mizen, Rebecca Riley, Tatsuro Senga, and John Van Reenen, (2025) "Do Well Managed Firms Make Better Forecasts?" Review of Economics and Statistics.
description: Volume XX, Issue X