cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.cnp5hqcd5
title: Belowground plant competition: Uncoupling root response strategies of peas

description: Belowground plant competition was shown to induce varying responses, from
 increases to decreases in root biomass allocation or in directional root
 placement. Such inconsistencies could result from the fact that root
 allocation and directional growth were seldom studied together, even
 though they might represent different strategies. Moreover, variations in
 belowground responses might be due to different size hierarchies between
 plants, but this hypothesis was not studied previously. In a greenhouse
 rhizobox experiment, we examined the way both root allocation and
 directional root placement of Pisum sativum are affected by the size and
 density of Festuca glauca neighbors, and by nutrient distribution. We
 found that root allocation of P. sativum increased with the density and
 size of F. glauca. In contrast, directional root placement was unaffected
 by neighbor size and either increased toward or away from neighbors when
 nutrients were patchily or uniformly distributed, respectively. These
 results demonstrate that directional root placement under competition is
 contingent on the distribution of soil resources. Interestingly, our
 results suggest that root allocation and directional placement might be
 uncoupled strategies that simultaneously provide stress tolerance and
 spatial responsiveness to neighbors, thus highlighting the importance of
 measuring both when studying belowground plant competition.
description: # Belowground plant competition: uncoupling root response strategies of
 peas
 [https://doi.org/10.5061/dryad.cnp5hqcd5](https://doi.org/10.5061/dryad.cnp5hqcd5) Raw data used in the analyses and figures included in the paper. ## Description of the data and file structure The dataset contains a table with: \* Rhizobox ID: ID number of the rhizobox and target Pisum sativum plant. \* Block number: number of the block, according to which the plants were arranged on the experimental benches (eight treatment combinations per block). \* Soil nutrient distribution: a fixed factor with two treatments (Patchy vs. Uniform nutrient distribution). \* Neighbor size: a fixed factor with two treatments (Big vs. Small Festuca glauca neighbors). \* Neighbor density: a fixed factor with two treatments (Single vs. Double Festuca glauca neighbors). \* Shoot biomass: a response variable of dry biomass of the shoots of Pisum sativum (mg). \* Root allocation: a response variable calculated as the ratio between root and shoot dry biomass of Pisum sativum. \* Total root length: a response variable of the total length of Pisum sativum roots per rhizobox (cm). \* Directional root placement: a response variable estimated per Pisum sativum plant as the relative change in root length measured between two sections of the rhizobox. N/A- represents unavailable data. ## Sharing/Access information If you need further information, please contact the corresponding author.
DOI: 10.7910/dvn/nslvhd
title: Material complementario

description: Contiene dos archivos PDF con la información generada en el análisis de políticas como la cartografía de controversias. Además contiene el corpus textual utilizado en la Cartografía de Controversias en tres formatos (XLSX, CSV y TXT), la codificación inicial en tres formatos (XLSX, CSV y TXT) y la codificación enfocada de esos códigos iniciales, también en tres formatos (XLSX, CSV y TXT).
DOI: 10.5061/dryad.98sf7m0s1
title: Data from: Diverse relationships between Batrachochytrium infections and antimicrobial peptide defenses across leopard frog populations

description: Synopsis Antimicrobial peptides (AMPs) play a fundamental role in the
 innate defense against microbial pathogens, as well as other immune and
 non-immune functions. Their role in amphibian skin defense against the
 pathogenic fungus Batrachochytrium dendrobatidis (Bd) is exemplified by
 experiments in which depletion of host’s stored AMPs increases mortality
 from infection. Yet, the question remains whether there are generalizable
 patterns of negative or positive correlations between stored AMP defenses
 and the probability of infection or infection intensity across populations
 and species. This study aims to expand on prior field studies of AMP
 quantities and compositions by correlating stored defenses with an
 estimated risk of Bd exposure (prevalence and mean infection intensity in
 each survey) in five locations across the United States and a total of
 three species. In all locations, known AMPs correlated with the ability of
 recovered secretions to inhibit Bd in vitro. We found that stored AMP
 defenses were generally unrelated to Bd infection except in one location
 where the relative intensity of known AMPs was lower in secretions from
 infected frogs. In all other locations, known AMP relative intensities
 were higher in infected frogs. Stored peptide quantity was either
 positively or negatively correlated with Bd exposure risk. Thus, future
 experiments coupled with organismal modeling can elucidate whether Bd
 infection affects secretion/synthesis and will provide insight into how to
 interpret amphibian ecoimmunology studies of AMPs. We also demonstrate
 that future AMP isolating and sequencing studies can focus efforts by
 correlating mass spectrometry peaks to inhibitory capacity using linear
 decomposition modeling.
description: # Diverse relationships between Batrachochytrium infections and
 antimicrobial peptide defenses across leopard frog populations
 [https://doi.org/10.5061/dryad.98sf7m0s1](https://doi.org/10.5061/dryad.98sf7m0s1) Dataset includes quantities of host defenses and pathogen loads from field surveys of leopard frog populations in five locations in the United States. ## Description of the data and file structure The Excel file named "ICB AMP Bd dataset.xlsx" has eight worksheets. The first worksheet is author affiliations, the second is metadata which describes the content of the last six worksheets which contain data. Data in all worksheets can be related by the unique individual identifier column “Swab_ID”. The Excel file named "SERDP_MALDI_data.xlsx" has seven worksheets. The first worksheet is author affiliations, the second worksheet is metadata which describes the content of the last five worksheets which contain MADLI-TOF data, separated by location. Data in these worksheets can be related to the "ICB AMP Bd dataset.xlsx" excel file using the unique individual identifier column “Swab_ID”. Missing data: NA ## Sharing/Access information Contact corresponding author for reuse.
DOI: 10.18112/openneuro.ds007342.v1.0.0
title: Bilingual language processing: reading words, sentences, and narratives with functional localizers
DOI: 10.5281/zenodo.18406571
title: GESTATIONALDIABETESMELLITUS:RELEVANCEOFTHEPROBLEM

description: Gestational diabetes mellitus (GDM) is a disorder of carbohydrate metabolism that is detected during pregnancy, posing a serious threat to the health of the mother and fetus. Since this problem is spreading globally, the development of early diagnosis, prevention and effective management methods is urgent.
DOI: 10.5281/zenodo.18406570
title: GESTATIONALDIABETESMELLITUS:RELEVANCEOFTHEPROBLEM

description: Gestational diabetes mellitus (GDM) is a disorder of carbohydrate metabolism that is detected during pregnancy, posing a serious threat to the health of the mother and fetus. Since this problem is spreading globally, the development of early diagnosis, prevention and effective management methods is urgent.
DOI: 10.15468/dl.rfwhgc
title: Occurrence Download

description: A dataset containing 860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Agave americana"
 ]
}

 The dataset includes 860 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004003-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8nyxr
title: Occurrence Download

description: A dataset containing 1394 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cethosia cyane"
 ]
}

 The dataset includes 1394 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004002-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.wstqjq2vg
title: CO and H2S-adsorbed 1D AlSi structures for gas sensing applications

description: Employing density functional theory (DFT) in conjunction with the Vienna
 Ab initio Simulation Package (VASP), this study systematically
 investigates the electromagnetic and optical characteristics of pristine
 one-dimensional (1D) AlSi structures (AlSi nanoribbons or AlSiNRs), as
 well as those of AlSiNRs adsorbing CO and H2S gases. The AlSiNRs under
 scrutiny exhibit a width of five atoms. Notably, the investigated
 structures exhibit metallic and magnetic attributes, with the introduction
 of CO and H2S altering the magnetism of the system. Analysis of the
 partial density of states reveals multi-orbital hybridizations, resulting
 in the formation of σ and π bonds that contribute to stabilizing the
 hexagonal structure of the system. Optical properties are delineated
 through the depiction of the real and imaginary components of the
 dielectric function, alongside the adsorption coefficient and
 electron-hole density. Remarkably, the research indicates that the
 structures manifest optical transparency when subjected to photon energies
 exceeding approximately 12.42 eV. These findings underscore the potential
 utility of the investigated structures in nanotechnological applications,
 particularly in the realm of CO and H2S gas sensing.
description: Using density functional theory and VASP software to study the
 electrical, magnetic and optical properties of material
 structures.
description: The data in the INCAR file are input commands to VASP, which will control
 the structural optimization processes as well as calculate the
 electromagnetic properties of the system. After structural optimization,
 the commands in INCAR will be changed to calculate the energy band
 structure, density of states, and charge density difference. The process
 of calculating the density of partial states adds the command LORBIT=12
 The process of calculating the charge density difference sets IBRION = -1
 so that the structure remains unchanged. KPOINTS is the dividing point
 grid for calculations on VASP. The initial KPOINTS is taken as 1x1x11,
 after optimization it will be increased to 1x1x100 to calculate the energy
 band structure and density of states of the system.
DOI: 10.5061/dryad.5x69p8dcj
title: Data from: Occurrence, ecology and management of Fascioloides magna in Bavaria, Southern Germany

description: In 2015, red deer infected with American liver fluke were discovered in
 the Veldenstein Forest area for the first time. This was the first
 detection of the fluke in a wild deer population in Bavaria.  The
 aim of the study was to determine the American liver fluke prevalence
 rates in red deer, roe deer and wild boar in the Veldenstein Forest, as
 well as factors influencing these rates. Since 2018, the livers of 83% of
 the red deer culled in the study area have been examined, as well as those
 of the occasional roe deer and wild boar. The livers are classified by
 adspection and dissection into four levels of infection. The age of the
 animals was estimated on the basis of dentition and tooth cementum annuli
 in the first molar (M1). The livers of 520 red deer, 226 roe deer and 75
 wild boar were dissected. All wild boar livers tested negative. 3% of roe
 deer and 36% of red deer livers were positive. To lower the prevalence,
 the red deer population was reduced, beginning in 2018. In the following
 years, it fell significantly. Medium and high levels of infection were
 initially detected in 61% of adult red deer. Since 2018, the median number
 of flukes per infected liver has decreased significantly from 17.51
 flukes/liver to 10.0 flukes/liver. On driven hunts, significantly more
 diseased deer were found than during hunting from raised hides.
 Furthermore, there are close correlations between infectations and the age
 of the red deer, and infections and the distance from the Pegnitz
 floodplains. The American liver fluke leads to the extinction of roe deer
 locally and to a massive infectation and decimation of the red deer
 population. Without a drastic reduction of the numbers in infected red
 deer populations, there is a risk of large-scale infection of native deer
 species across large areas in Bavaria.
description: # Data from: Occurrence, ecology and management of Fascioloides magna in
 Bavaria, Southern Germany
 [https://doi.org/10.5061/dryad.5x69p8dcj](https://doi.org/10.5061/dryad.5x69p8dcj) ## Description of the data and file structure Column: 1No. 2 Distance to river (km) 3 hunting method 4 hunting season 5 month 6 game species 7 sex 8 age class no. 9 age (year) 10 weight (kg) 11 findings No. 0=neg. 1= pos. 12 count of liver flukes 13 intensity of infection: 0=no signs of infection, 1= low level of infections, 2= medium level of infection, 3= high level of infections Missing data code: na
DOI: 10.15468/dl.ngdze5
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Geometry POLYGON((-67 44.82,-65.5 44.82,-65.5 46,-67 46,-67 44.82))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is VU",
 "OccurrenceStatus is Present",
 "TaxonKey is Fringillidae",
 "Year 2013-2023"
 ]
}

 The dataset includes 91 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004006-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.m37pvmd9x
title: Data from: Caste-biased patterns of brain investment in the subterranean termite Reticulitermes flavipes

description: Investment into neural tissue is expected to reflect the specific sensory
 and behavioral capabilities of a particular organism. Termites are
 eusocial insects that exhibit a caste system in which individuals can
 develop into one of several morphologically and behaviorally distinct
 castes. However, it is unclear to what extent these differences between
 castes are reflected in the anatomy of the brain. To address this
 question, we used deformation-based morphometry to conduct pairwise
 comparisons between the brains of different castes in the eastern
 subterranean termite, Reticulitermes flavipes. The dataset presented here
 consists of the confocal images of all the brains used in our analysis,
 separated by caste. Brains from five castes are presented - workers,
 soldiers, ergatoids, nymphs, and alates - which are further divided by
 sex.
description: Eastern subterranean termite, <em>Reticulitermes
 flavipes</em>, brains were dissected and immunostained using the
 commercially available antibody nc82, which stains at presynaptic active
 zones. Images were captured using a Leica SP8 DLS laser scanning confocal
 microscope at the Art & Sciences Imaging Center at the University
 of Kentucky. Whole brains were imaged at 1024x1024 pixel resolution using
 a 10x dry objective (HC PL APO 10x/0.40). Image stacks were generated by
 capturing images of brains at 1 μm intervals, which were saved as .TIF
 files. These image stacks were then imported into Fiji (https://fiji.sc/)
 and rotated so that all were oriented in the same direction. Black image
 slices were either added or removed to the beginning and/or end of each
 image stack so that the total number of image slices equaled either 150 or
 160 (depending on caste). Image stacks that appeared faint were brightened
 by lowering the maximum display range in Fiji's
 "Brightness/Contrast" menu. Image stacks were then exported as
 .NRRD files to facilitate our pairwise comparisons of brain
 allometry.
description: # Data from: Caste-biased patterns of brain investment in the subterranean
 termite Reticulitermes flavipes
 [https://doi.org/10.5061/dryad.m37pvmd9x](https://doi.org/10.5061/dryad.m37pvmd9x) This dataset consists of the confocal data used in our analysis of caste-biased differences in termite brain allometry. ## Description of the data and file structure Data are presented as .NRRD files, separated into different folders by caste. The castes imaged were workers, soldiers, ergatoids (worker-derived reproductives), nymphs, and alates. The first letter in each filename denotes the sex of the individual (F = female, M = male), followed by the caste (A = alate, E = ergatoid, N = nymph, S = soldier, W = worker), then a numerical identifier. Finally, "_01" is appended to the end of each filename, which was used in our pairwise comparisons between castes but serves no role in identifying brains. We used Fiji ([https://fiji.sc/](https://fiji.sc/)) to visualize and prepare brains for comparisons.
DOI: 10.5061/dryad.w6m905qxc
title: Structural genomic variation and behavioral interactions underpin a balanced sexual mimicry polymorphism

description: Here, we uncover the genetic architecture of a balanced sexual mimicry
 polymorphism and identify behavioral mechanisms that may be involved in
 its maintenance in the swordtail fish Xiphophorus birchmanni. We
 find that ~40% of X. birchmanni males develop a “false gravid spot”, a
 melanic pigmentation pattern that mimics the “pregnancy spot” associated
 with sexual maturity in female live-bearing fish. Using genome-wide
 association mapping, we detect a single intergenic region associated with
 variation in the false gravid spot, which is upstream of kitlga, a gene
 involved in melanophore patterning. By performing long-read sequencing
 within and across populations, we identify complex structural
 rearrangements between alternate alleles at this locus. The false gravid
 spot haplotype drives increased allele-specific expression of kitlga,
 which provides a mechanistic explanation for the increased melanophore
 abundance that causes the spot. We speculate that structural variants
 affecting gene regulation may be an underappreciated driver of balanced
 polymorphisms across diverse species.
description: # Complex structural variation and behavioral interactions underpin a
 balanced sexual mimicry polymorphism
 [https://doi.org/10.5061/dryad.w6m905qxc](https://doi.org/10.5061/dryad.w6m905qxc) The following data relating to this project have been deposited: X. malinche genome assembly, X. birchmanni nanopore and hifi assemblies, RNAseq kallisto h5 abundance files, images from *X. birchmanni* otoliths ## Description of the data and file structure Haploid genome assembly for *X. malinche*: * xmal-CHIC-XI-20-M_v2023.2.fa.gz Diploid assemblies for *X. birchmanni* using ONT (shasta) or PacBio HiFi (hifiasm). Naming conventions are as follows: species-population-date_sampled-sex. Corresponding individual IDs can be found at https://zenodo.org/doi/10.5281/zenodo.13329118. * xbir-*_Assembly-Phased.fasta.gz * xbir-COAC-19-IX-23-M.q20.bp.p_utg.fa.gz Images of otoliths from juvenile *X. birchmanni*. Naming conventions are as follows: number-leftright. Number denotes individual sampled, and leftright which side of the fish the otolith was taken from.  * xbir-COAC-otolith_processing.tar.gz
DOI: 10.15468/dl.6cf38c
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Geometry POLYGON((-67 44.82,-65.5 44.82,-65.5 46,-67 46,-67 44.82))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is VU",
 "OccurrenceStatus is Present",
 "TaxonKey is Fringillidae",
 "Year 2013-2023"
 ]
}

 The dataset includes 91 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004008-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.x69p8czst
title: Research on characteristic properties of ASiGe nanoribbons materials for nanoelectronics and optoelectronics applications

description: The paper presents the properties of the armchair SiGe nanoribbons
 material configuration. Through the VASP calculation program, some basic
 characteristic properties of electricity, magnetism, optics such as
 electronic band structure, density of states, charge density distribution,
 spin density distribution, real and imaginary parts of dielectric
 functions, JDOS spectroscopy, as well as the rate of optical absorption
 and reflection according to the wavelength of incoming light surveyed and
 evaluated. The results show that the ASiGeNR structural system has a
 direct band gap about 0.2410 eV, which opens at the  point. There is a
 hybrid of sp2 and sp3 mixtures in the ASiGeNRs; the strength of σ bonds is
 relatively stronger than that of π bonds; ASiGeNR systems can allow
 electromagnetic waves to pass through, at most in the z-direction; the
 respective energy levels and directions in which the AsiGeNR structure
 absorbs or disperses energy most around 1.5 eV and 4.2 eV in the y and z
 directions; peaks of 6.6 eV and 8.0 eV in the x direction. These results
 have also shown that ASiGeRN absorbs the best photosynthesis for
 wavelengths between 150 nm and 200 nm, and best reflectance at wavelengths
 between 150 nm and 300 nm.
description: # Research on characteristic properties of ASiGe nanoribbons materials for
 nanoelectronics and optoelectronics applications (DOI):
 doi:10.5061/dryad.x69p8czst ## Description of the data INCAR: contains all
 keywords and tells VASP what to calculate POSCAR: contains lattice
 parameters, atomic coordinates information, and atomic velocity
 information KPOINTS: contains K-points information in the reciprocal space
 at which the wave function integrates to obtain the charge density
 CONTCAR: contains post-optimized structural information OUTCAR1,OUTCAR2:
 contains information about calculation results These files can be opened
 with the notepad program.
DOI: 10.15468/dl.8v76m2
title: Occurrence Download

description: A dataset containing 313426 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is one of (BRA.18_1, BRA.10_1, BRA.15_1, BRA.17_1)",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 313426 records from 330 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003969-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.