cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27042208.v1
title: Exploring DIX-DIX homo- and hetero-oligomers in Wnt Signaling with AlphaFold2

description: Wnt<b> </b>signaling is involved in embryo development and cancer. The binding events between the DIX domains of three proteins (Axin1/2, Dishevelled1/2/3, and Coiled-coil-DIX1) are essential to the mechanism of action downstream of the Wnt/b-catenin signaling pathway. Structural and biological studies have revealed that DIX domains are polymerized through head-to-tail interface interaction, which is indispensable for activating b-catenin Wnt signaling. There is growing evidence that DVL or AXIN isoforms display both redundant and specific functions in the Wnt signaling pathway. Due to technical challenges, however, the binding and specificity of DIX-mediated interactions still need to be discovered. We employ AlphaFold2(AF2) to predict six homodimers and 22 heterodimers of DIX domains without templates and compare them with the reported X-ray complex structures. The results indicate that AF2 predicts the complex structures of homodimers and heterodimers accurately, compared to the reported X-ray structures. PRODIGY is used to calculate the binding affinities of these DIX complexes. The results show that the binding affinity (K<sub>D</sub>) of the Axin2 DIX(DAX2) homodimer is stronger than that of the Axin1 DIX(DAX1) homodimer. For Dishevelled (Dvl) proteins, Dvl1 DIX homodimer (DIX1-DIX1) shows higher binding comparable to Dvl2 DIX(DIX2) and Dvl3 DIX(DIX3) homodimers. For the positive Wnt signaling regulator Coiled-coil-DIX1(Ccd1), the K<sub>D</sub> value of the Ccd1 DIX(DC1) homodimer is lower than that of the Axin1 DIX(DAX1) homodimer. Depending on the isoforms of DIX proteins, the heterodimer interactions are estimated to be stronger than the homodimer ones. Based on the binding affinities of DIX-driven interactions, we discuss the molecular mechanism of the Wnt signaling pathway. This study suggests that AF2-powered protein complex prediction and PRODIGY-powered binding affinity prediction could provide crucial insights into protein-protein interactions in signaling pathways.
DOI: 10.15468/dl.34vtw8
title: Occurrence Download

description: A dataset containing 1901 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((9.41753 43.29516,8.22829 42.58655,8.18616 41.69133,9.03399 41.32271,9.37101 41.30165,9.86075 42.04942,9.56058 43.11315,9.41753 43.29516))",
 "TaxonKey is Pinus nigra J.F.Arnold"
 ]
}

 The dataset includes 1901 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033054-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13850865
title: Vortex input files -- Linking habitat and population viability analysis models of a metapopulation of Florida scrub-jays

description: Vortex input files for manuscript "Linking habitat and population viability analysis models to account for vegetation dynamics, habitat fragmentation, and social behavior of a metapopulation of Florida scrub-jays" by R. C. Lacy, D. B. Breininger, et al.
DOI: 10.5281/zenodo.13850866
title: Vortex input files -- Linking habitat and population viability analysis models of a metapopulation of Florida scrub-jays

description: Vortex input files for manuscript "Linking habitat and population viability analysis models to account for vegetation dynamics, habitat fragmentation, and social behavior of a metapopulation of Florida scrub-jays" by R. C. Lacy, D. B. Breininger, et al.
DOI: 10.6084/m9.figshare.27110071
title: Supplementary Information 1: Candidates & Purifications

description: ‘Candidate 7500’ is the single name given to multiple peaks in the range m/z 7-8000 in MALDI-TOF MS (the paper’s Figs. 2-6) seen many times during a search for the molecular basis for an organ-mass downregulatory reproductive hormonal activity (Hart, 2014; all references in paper). Bioassay guided fractionations (see later, ‘Physicochemical Purifications’) involved ovarian follicular fluid, ovarian venous plasma and systemic blood plasma and serum mainly from sheep (<i>Ovis aries</i>).
DOI: 10.15468/dl.2xwn5h
title: Occurrence Download

description: A dataset containing 5124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Denmark",
 "TaxonKey is Callophrys rubi (Linnaeus, 1758)"
 ]
}

 The dataset includes 5124 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033056-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9496071
title: Mahanagar Yatayat Transport Dataset
DOI: 10.34740/kaggle/dsv/9496086
title: Bug tracker management system project report.
DOI: 10.5517/ccdc.csd.cc23tx51
title: CCDC 1961313: Experimental Crystal Structure Determination

description: Related Article: Wee Shan Tay, Yongxin Li, Sumod A. Pullarkat, Pak-Hing Leung|2019|Organometallics|39|182|doi:10.1021/acs.organomet.9b00723
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24bgb9
title: CCDC 1976260: Experimental Crystal Structure Determination

description: Related Article: Andrei S. Batsanov, Kittiya Wongkhan|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24v4cj
title: CCDC 1991327: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, R.W. Harrington|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25gknw
title: CCDC 2009998: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold and Russell P. Hughes|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2by5j0
title: CCDC 2172992: Experimental Crystal Structure Determination

description: Related Article: Matthew J. G. Sinclair, Adrian B. Chaplin|2022|Dalton Trans.|51|11617|doi:10.1039/D2DT02152H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ckp1p
title: CCDC 2191732: Experimental Crystal Structure Determination

description: Related Article: Jiarui Chang, Man Ding, Jia-Xue Mao, Jie Zhang, Xuenian Chen|2022|Dalton Trans.|51|17602|doi:10.1039/D2DT03131K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fln0q
title: CCDC 2252243: Experimental Crystal Structure Determination

description: Related Article: Chandra Shekhar Tiwari, Praseetha Mathoor Illam, Arnab Rit|2023|Chem.Asian J.|18|e202300484|doi:10.1002/asia.202300484
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0j01
title: CCDC 2264612: Experimental Crystal Structure Determination

description: Related Article: Natalia Moldovan, Luminita Silaghi-Dumitrescu, Peter Lönnecke, Evamarie Hey-Hawkins|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24qb07
title: CCDC 1987658: Experimental Crystal Structure Determination

description: Related Article: Alena M. Vasquez,  John A. Gurak,  Candice L. Joe,  Emily C. Cherney,  Keary M. Engle|2020|J.Am.Chem.Soc.|142|10477|doi:10.1021/jacs.0c03040
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.tst8vp
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zoraptera",
 {
 "not" : {
 "InstitutionCode" : [
 "is iNaturalist"
 ]
 }
 }
 ]
}

 The dataset includes 258 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033059-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9496098
title: Computer graphics system project report.
DOI: 10.34740/kaggle/dsv/9496119
title: Greenscreen background remover using CV system.
DOI: 10.5519/qd.p1s0yb5h
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (33 records)
DOI: 10.34740/kaggle/dsv/9496136
title: Human age and gender prediction management system.
DOI: 10.5281/zenodo.13850859
title: Nocturnal leaf respiratory CO2 release in different species measured at constant temperature

description: RAW data for GCB publication by Dan Bruhn, Martijn Slot, and Lina M Mercado, 'Simple and accurate representation of cumulative night-time leaf respiratory CO2-efflux'

Nocturnal leaf respiratory CO2 release in 14 different species measured at constant temperature measured in the field.
DOI: 10.5281/zenodo.13850860
title: Nocturnal leaf respiratory CO2 release in different species measured at constant temperature

description: RAW data for GCB publication by Dan Bruhn, Martijn Slot, and Lina M Mercado, 'Simple and accurate representation of cumulative night-time leaf respiratory CO2-efflux'

Nocturnal leaf respiratory CO2 release in 14 different species measured at constant temperature measured in the field.
DOI: 10.15468/dl.n72eap
title: Occurrence Download

description: A dataset containing 278 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euwallacea similis (Ferrari, 1867)"
 ]
}

 The dataset includes 278 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033061-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrks39
title: Occurrence Download

description: A dataset containing 22186205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((38.000 85.000, -27.000 85.000, -27.000 56.000, 38.000 56.000, 38.000 85.000))",
 "Year 1990-1999"
 ]
}

 The dataset includes 22186205 records from 1335 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033057-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ppryb2
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Campylanthus anisotrichus (A.G.Mill.) Hjertson & A.G.Mill."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071823-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a6ss8j
title: Occurrence Download

description: A dataset containing 52587 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptidea sinapis (Linnaeus, 1758)"
 ]
}

 The dataset includes 52587 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024687-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vv6tjg
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vaccinium membranaceum Douglas ex Torr.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 182 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164614-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nr3gt5
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trimeresurus schultzei Griffin, 1909"
 ]
}

 The dataset includes 25 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071845-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cksuh4
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vaccinium myrsinites Lam.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 36 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164615-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbucg2
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paspalum pygmaeum Hack."
 ]
}

 The dataset includes 122 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024687-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wtvhj
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthurium coloradense Croat"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0143170-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33cyet
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea tsaratananensis H.Perrier"
 ]
}

 The dataset includes 49 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022134-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbtdu4
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Iris cristata Aiton",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 98 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0175721-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpoa3w
title: Occurrence Download

description: A dataset containing 273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vulpes vulpes necator Merriam, 1900"
 ]
}

 The dataset includes 273 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024689-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8y36tt
title: Occurrence Download

description: A dataset containing 574 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypericum hypericoides (L.) Crantz",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 574 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0175705-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.43pq82
title: Occurrence Download

description: A dataset containing 926 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macadamia integrifolia Maiden & Betche"
 ]
}

 The dataset includes 926 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071270-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekl6vm
title: Occurrence Download

description: A dataset containing 444 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.44998 11.23901,-75.20828 10.20081,-74.64523 10.20081,-74.64798 11.24451,-75.44998 11.23901))",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 444 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024690-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cs9x95
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triadenum virginicum (L.) Raf.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 290 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0175717-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25585638
title: Species information of 792 reference sequences used for Vert-U primers design

description: Species information of 792 reference sequences used for Vert-U primers design
DOI: 10.15468/dl.gxt32h
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspidosperma inundatum Ducke"
 ]
}

 The dataset includes 53 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0143171-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqxz5d
title: Occurrence Download

description: A dataset containing 543 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa scaberula Hook.f."
 ]
}

 The dataset includes 543 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024690-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbgcy8
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Notiosorex cockrumi Baker, O'Neill & McAliley, 2003"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071291-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fe5uts
title: Occurrence Download

description: A dataset containing 1806 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trematodon ambiguus (Hedw.) Hornsch."
 ]
}

 The dataset includes 1806 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151633-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hecikq
title: Occurrence Download

description: A dataset containing 273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vulpes vulpes necator Merriam, 1900"
 ]
}

 The dataset includes 273 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024693-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hws4cq
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hedlundia sognensis (Hedl. ex Sennikov, Hjertson & Salvesen) Sennikov & Kurtto"
 ]
}

 The dataset includes 75 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015144-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.