cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/93f6sbhjy6.1
title: Data for: Numerical study of single bubble rising dynamics for the variability of moderate Reynolds and sidewalls influence: A bi-phase SPH approach

description: Supplementary information (data and figures) for the paper "Numerical study of single bubble rising dynamics for the variability of moderate Reynolds and sidewalls influence: A bi-phase SPH approach" The files contain the main results, organizer by sections, such as: 4.1. Numerical validation - 4.1.1. The ∆x effects in the bubble and its streamlines shedding - 4.1.2. The effects of sidewalls boundary conditions in the bubble formation - 4.1.3. Density rate dependence 4.2. Bubble rising formation with a high effect of sidewalls - 4.2.1. Zone I - 4.2.2. Zone II 4.3. Bubble rising formation with a low effect of sidewalls - 4.3.1. Zone II - 4.3.2. Zone III SUPPLEMENTAL DOCUMENT - A. Momentum equations validation with case 1 - B. The influence of β ≤ 2 - C. Density rates validation with case 2
DOI: 10.17632/47d4yv26gh.1
title: Sedimentogenesis of Fe, Mn, Al, Cu, Zn and Cr in the Lake Onego

description: This dataset has a description of the average total and dissolved metals contents in water and in water suspended matter of Lake Onego, and of the characteristics of the chemical composition of suspended matter from sedimentation traps and of the chemical composition of the surface (0-5 cm) layer of bottom sediments of Lake Onego.
DOI: 10.17632/jchgxt49hy.1
title: Saturation correction of resistivity

description: Test data for resistivity saturation correction in response to revisions
DOI: 10.17632/2wj6jkg8wj.1
title: Magnetic equivalent circuit for TLVCM

description: Magnetic equivalent circuit of Tubular Linear Voice Coil Motor
DOI: 10.17632/zg26by3yz2.1
title: Saturation correction of resistivity

description: Test data for resistivity saturation correction in response to revisions
DOI: 10.17632/xhw467892r.1
title: Thin plate spline files of loliginid squid beaks

description: TPS files of landmarks contouring upper and lower beaks of loliginid squids from the eastern Pacific to used for geometric morphometrics according to Pacheco-Ovando et al.
DOI: 10.17632/9h9dyyxc49.2
title: Shorter life and reduced fecundity can increase colony fitness in virtual C. elegans

description: This dataset contains raw data generated during simulations, as well as analysed data and graphs. The folder called "Scripts" contains all the script used to generate the data. Readme.txt file inside the folder contains a description regarding how to run the modelling. There are 6 compressed folders corresponding to the 5 different groups of experiments we set up: 1) Simulations where there was no reproductive decline, and where we varied the number of progeny produced by live adult at each timepoint. 2) Simulations where there was reproductive decline, and we tested different reproductive schedules. 3) Simulations where reproduction happened only at day 1 of adulthood, and we varied the number of progeny produced by day 1 adults. 4) Simulations where 4 progeny were produced only at day 1 of adulthood and we varied the number of food that adults consume. 5) Simulations where 4 progeny were produced only at day 1 of adulthood and we varied the number of food that larvae consume. 6) Simulations where 4 progeny were produced only at day 1 of adulthood were a control. We varied amount of food source, shape of food source, grid size, the number of founders. It includes simulations when adult food consumption was declines according to Huang et al 2004 or after day 2 Each subfolder in these folders (i.e. "2_progeny_per_timepoint" subfolder in the unzipped "1_No_reproductive_decline" folder ) corresponds to a particular simulation experiment where reproductive schedule and food consumption rates for adults and larvae are fixed. So, the subfolder contains the result for 4500 simulations (5 different lifespans * 9 different dispersal speeds * 100 repeats). Each subfolder (that corresponds to reproductive schedule and food consumption) also contains a file called run3_fast.py where all the parameters for the simulation are written, and 4 subfolders: 1_Raw_data_by_timepoints, 2_All_conditions__by_timepoints, 3_each_condition__over_all_timepoints, 4_all_conditions_over_all_timepoints 1_Raw_data_by_timepoints – contains raw data from the in silico experiment for all 4500 simulations for each timepoint. Each timepoint is a separate table. 2_All_conditions__by_timepoints – contains different folders where results over all 100 repeats are averaged for all 45 lifespan*speed combinations for each timepoint 3_each_condition__over_all_timepoints – in this folder it is shown how particular metrics (i.e. number of dauers) changes over timepoints for each of 45 pairs of lifespan*dispersal speed 4_all_conditions_over_all_timepoints – the folder contains graphs where all 45 lifespan*speed combinations or 9 speeds for each of 5 lifespans are shown over all timepoints for: number of adults – number of adults at a timepoint. share of food consumption by adults – cumulative share of food consumed by adults by a timepoint. L2S__max – maximum number of dauers by a timepoint. L2S – number of dauers at a timepoint L2S_sum – sum number of dauers by a timepoint.
DOI: 10.17632/r5sjkv9yds.1
title: IGC COVID-19 Bihar (1292)

description: This data set contains information on pre- and post- lockdown dietary practices of women aged 5-49 years and their youngest child; information on education, age, socio-religious identity, asset holdings, contacts with pradhan or ruling party, etc. is also available in the data set. The data was collected using surveys in January-March 2020 (face to face) and October-November 2020 (telephonic). The survey was conducted in 6 districts of Bihar. It was funded by The International Growth Center (Grants no. 18013 and IND_1292). The data is in Stata version 14 (IC) format. Suggested acknowledgment for use of data Zakir Husain, Saswata Ghosh and Mousumi Dutta (2020) Herself and her child: How worse are they? Impact of COVID-19 on rural Bihar. Study funded by The International Growth Center, Grant No. IND_1292.
DOI: 10.17632/xtz3v8jwt3.1
title: Ethical Business Decision Making Narratives

description: The phenomenology qualitative data narrates and showcases business stewards’ personal values as fundamental in making ethical business decisions. Especially in a time of crisis such as Covid-19, personal values help business stewards to set the tone for the next course of action and execution.
DOI: 10.17632/kpdngx4m2f.3
title: Supplemental Tables for Dzombak et al. (2021) Palaeo3: Lateral heterogeneity in paleosols and implications for proxy uncertainty

description: Supplemental Tables for Dzombak et al. (in review) Palaeo3 paper on how sampling density and outcrop extent affect certainty in paleosol-based proxy reconstructions. Also Chapter V in R.M. Dzombak's Ph.D. dissertation at the University of Michigan. Table S1. Sample information Table S2. Bulk geochemistry Table S3. Statistics on CaO in modern soils Table S4. Holdridge life zone data Resampling of transects performed in Matlab 2019a. (csv: 'greeco_data.csv' is for JMH paleosol transect)
DOI: 10.17632/x6jbwvkny6.2
title: Raw data for: Ambiental impacts of a dumpsite in a mangrove ecosystem

description: The management of solid waste is one of the challenges of large urban centers. The Itaoca dump in São Gonçalo, Rio de Janeiro, Brazil, has existed for 28 years in the mangrove region. This experiment assessed environmental liability through a sedimentary profile collected from a drainage channel adjacent to the mangrove. In this profile, biopolymers (organic matter and total organic carbon) and metals' total and available fractions (Al, V, Cr, Mn, Fe, Co, Ni, Cu, Hg, Cd, Pb, and Zn) were quantified, serving as descriptors of the local trophic status.
DOI: 10.17632/4fjbs4j24j.1
title: Mindfulness and self-compassion mechanisms of action: a correlational study

description: This study aimed to investigate the mechanisms of action of mindfulness and self-compassion. the literature on mindfulness indicates that self-compassion may be one mechanism by which mindfulness improves mental health and psychological well-being. To this hypothesis, the present study evaluates the mediating role of self-compassion in the relation between mindfulness and two positive psychological functioning variables: satisfaction with life and emotion regulation. Some authors have proposed that the influence of mindfulness on self-compassion may be reciprocal. To test this proposal, the present study also evaluates the mediating role of mindfulness in the relation between self-compassion and the two studied variables. Finally, emotion regulation has been regarded as a possible mechanism of action for self-compassion. Motivated by this idea, this study also sought to find out whether emotion regulation mediates the relation between self-compassion and satisfaction with life. Our results provide empirical support to the mediating role of self-compassion in the relation between mindfulness and positive psychological functioning. Contrarily, mindfulness generally does not mediate the effects of self-compassion, which contradicts the idea of the reciprocal influence of mindfulness and self-compassion. Finally, our results also confirmed the mediating role of emotional repair between self-compassion and satisfaction with life.
DOI: 10.17632/czrmxh3c85.1
title: ParamGULP: An efficient Python code for obtaining interatomic potential parameters for General Utility Lattice Program

description: General Utility Lattice Program (GULP) is an important software to the scientific community and available free for academic use. GULP allows studying several properties of solid materials since it has implemented an extensive list of interatomic potentials. However, an important step in the atomistic simulations is to determine the interatomic potential parameters and this step usually demands much time to be performed. In this work, we advance a user-friendly code written in the Python language called ParamGULP, which is designed to fit potential parameters with the help of the SciPy library. As far as we know, ParamGULP is the only Python code available for such a purpose and provides an alternative means of fitting to the algorithms built into GULP, being applied to any potential. In addition, the use and efficiency of our code were shown by applying it to obtain a set of interatomic potentials to reproduce the family of the RFeO_3 structures, where R stands for Dy, Er, Eu, Gd, Ho, Lu, Pr, Sm, Tb, Tm, and Yb. By considering some case studies, the benefits offered by ParamGULP for obtaining potential parameters could be noted. ParamGULP is designed to make the parameterization of interatomic potentials more efficient, further increasing and extending the use of GULP.
DOI: 10.17632/y54smkw8xf.1
title: Ozonated water 0.05 ppm - oral microflora

description: Aim: to determine the antibacterial effect of 0.05 ppm ozonated water on oral S. aureus, S. mutans, P. intermedia, Lactobacillus spp., С. albicans, C. krusei. Materials and Methods: The clinical isolates were identified. Bacteria and fungi samples were obtained from subgingival plaque of a patient with generalized chronic marginal periodontitis in exacerbation (suppuration) stage. Preparation of ozonated water: Ozonated water was produced by the ozonegenerator with ultraviolet radiation BOP-01/27 (NanEMA, Russia). The saturation of each 10 ml of distilled water with ozone was carried out during 10 min. The concentration of ozone in water was measured by the indicator strips (eXact 486634 Micro Ozone Strips; Industrial Test Systems Inc, USA). The concentration was 0,05 ppm (0.09956 mg/m3). Cultivation of microorganisms in bioreactor: S. aureus was cultured in 4 ml of brain heart infusion broth M210, S. mutans were cultivated in Todd&HewittBroth - М313, P. intermedia was cultivated in Columbia Broth Base - М145. Lactobacillus spp. were cultivated in Sabouraud Dextrose Broth - M033. С. albicans was cultivated in Fluid Sabouraud Medium - М013. All media were produced by HiMedia Laboratories, India. For each isolate the suspension was prepared according to the turbidity of 0,5±0,3 McFarland test, 0.05 ppm ozonated water and distilled water were applied to the bacterial suspensions. The cultivation was done in the bioreactor for 50 hours. The measurements of optical density (OD) of 850 nm, calculation of growth rate and plotting of growth curves. The regression analysis was done with an assessment of Fisher's criterion and Pearson's correlation coefficient. Conclusion: In the presented study useful concentration of ozonated water was investigated. The growth of S. mutans, S. aureus и P. intermedia, С. albicans and C. krusei was suppressed and the growth of Lactobacillus spp. was not affected by the 0.05 ppm ozonized water. Thus, 0.05 ppm ozonated water rinsing can be an effective adjunct method to decrease bacterial load, prevent fungal overgrowth and without suppressive effect on commensal lactobacillus. The raws and processed data are presented in the files.
DOI: 10.17632/kj5ydx56jn.1
title: MeltSheet thermal model for R

description: In Kenny et al. (2021, EPSL) we investigated the cooling timescale of the Morokweng impact melt sheet, South Africa. We compared high precision U-Pb zircon ages to a model of conductive cooling of the melt sheet and found that U-Pb zircon ages from the upper part of the melt sheet are consistent with conductive cooling within 30 kyr of the impact. The U-Pb zircon age from the lower part of the melt sheet is insufficiently explained by the conductive cooling alone and likely indicates melt-present conditions in the impact structure to ~65 kyr after impact. Additionally, we scaled the thermal model up to model the larger Chicxulub impact melt sheet and found melt sheet solidification timescales of ~100-150 kyr with melt-present conditions for ~300 kyr. The R code provided here can be used to replicate our thermal models, or it can be modified for other impact melt sheets. MeltSheet.R runs the Morokweng impact melt sheet model, and MeltSheet_Chicxulub.R runs the Chicxulub impact melt sheet model.
DOI: 10.17632/m8wf9p7rc9.2
title: DTM_LDA

description: an investigation with DTM based on LDA
DOI: 10.6084/m9.figshare.12859630.v1
title: Assessment of TREM2 rs75932628 variant’s association with Parkinson’s disease in a Greek population and Meta-analysis of current data

description: Α number of genetic variants are considered to confer susceptibility to Parkinson’s disease (PD). Rs75392628 (R47H), a rare variant of TREM2 gene, has been linked to PD, although its role on PD remains conflicting. Detection of a possible contribution of rs75392628 variant of TREM2 gene to PD risk. A total of 358 PD patients and 358 healthy controls genotyped for rs75392628. In addition, a meta-analysis was performed by merging our results with those from previous studies. The rare variant of rs75932628 (47H) of TREM2 gene was not detected on cohort. Meta-analysis of a total of 9271 PD cases and 9777 controls across 14 independent PD data sets from 9 studies, including the present study, did not show any statistically significant effect of rs75392628 on PD risk (OR<sub>FE</sub>:1.54 95% CI:0.87-2.73. OR<sub>RE</sub>: 1.54, 95%CI: 0.71-3.32). Rs75392628 TREM2 variant is rather unlikely to be a major genetic risk contributor of PD.
DOI: 10.6084/m9.figshare.12859630
title: Assessment of TREM2 rs75932628 variant’s association with Parkinson’s disease in a Greek population and Meta-analysis of current data

description: Α number of genetic variants are considered to confer susceptibility to Parkinson’s disease (PD). Rs75392628 (R47H), a rare variant of TREM2 gene, has been linked to PD, although its role on PD remains conflicting. Detection of a possible contribution of rs75392628 variant of TREM2 gene to PD risk. A total of 358 PD patients and 358 healthy controls genotyped for rs75392628. In addition, a meta-analysis was performed by merging our results with those from previous studies. The rare variant of rs75932628 (47H) of TREM2 gene was not detected on cohort. Meta-analysis of a total of 9271 PD cases and 9777 controls across 14 independent PD data sets from 9 studies, including the present study, did not show any statistically significant effect of rs75392628 on PD risk (OR<sub>FE</sub>:1.54 95% CI:0.87-2.73. OR<sub>RE</sub>: 1.54, 95%CI: 0.71-3.32). Rs75392628 TREM2 variant is rather unlikely to be a major genetic risk contributor of PD.
DOI: 10.17632/jnwnvvsvcz.1
title: SH_CHICKEN

description: SH (%) groups changes during storage of raw and cooked chicken meat enriched with various plant extracts at different temperature.
DOI: 10.17632/3c9wh47mwm.1
title: Figwort – Thoughts on Historical Texts and New Practical Exploration
DOI: 10.17632/j3wr4wn946.2
title: OpenMP solver for rotating spin-1 spin–orbit- and Rabi-coupled Bose–Einstein condensates

description: We present OpenMP version of a Fortran program for solving the Gross–Pitaevskii equation for a harmonically trapped three-component rotating spin-1 spinor Bose–Einstein condensate (BEC) in two spatial dimensions with or without spin–orbit (SO) and Rabi couplings. The program uses either Rashba or Dresselhaus SO coupling. We use the split-step Crank–Nicolson discretization scheme for imaginary- and real-time propagation to calculate stationary states and BEC dynamics, respectively.
DOI: 10.17632/rtp8xr3hn9.1
title: PDFFlow: Parton distribution functions on GPU

description: We present PDFFlow, a new software for fast evaluation of parton distribution functions (PDFs) designed for platforms with hardware accelerators. PDFs are essential for the calculation of particle physics observables through Monte Carlo simulation techniques. The evaluation of a generic set of PDFs for quarks and gluon at a given momentum fraction and energy scale requires the implementation of interpolation algorithms as introduced for the first time by the LHAPDF project. PDFFlow extends and implements these interpolation algorithms using Google's TensorFlow library providing the capabilities to perform PDF evaluations taking fully advantage of multi-threading CPU and GPU setups. We benchmark the performance of this library on multiple scenarios relevant for the particle physics community.
DOI: 10.17632/yy68tb6fd4.1
title: Ex vivo analysis of DNA repair targeting in extreme rare cutaneous apocrine sweat gland carcinoma

description: Supplemental data files for Mäkelä et al. Supplemental data 1. Ex vivo drug screening results. Supplemental data 2. Ex vivo RNAi screening results.
DOI: 10.17632/8wxhhykfnh.1
title: Transcriptomic signatures of SARS-CoV-2 and Influenza virus infections

description: Blood gene-expression was measured in 103 patients infected with SARS-CoV-2 (collectively named “COVID-19”) and compared to that of 22 patients infected with Influenza A or B (INFL) as well as 27 non-infected, healthy individuals (HLTY) COVID-19 patients were stratified according to the level of respiratory failure; 23 did not require oxygen support (“OXY0”), 40 received oxygen but no mechanical ventilation (“OXY1”) and 40 required mechanical ventilation (“TUBE”). In the latter group, 15 patients were sampled within the first 7 days in hospital (“TUBE early”) while 25 were sampled later (“TUBE late”).
DOI: 10.17632/w5bxkfsj4d.1
title: viewSq, a Visual Molecular Dynamics (VMD) module for calculating, analyzing, and visualizing X-ray and neutron structure factors from atomistic simulations

description: viewSq is a Visual Molecular Dynamics (VMD) module for calculating structure factors (S (q)) and partial structure factors for any user-selected atomic selections (S_sel1,sel2 (q)) derived from computer simulation trajectories, as well as quantifying, analyzing, and visualizing atomic contributions to them. viewSq offers radial distribution functions (g (r)), S (q) and S_sel1,sel2 (q) with and without X-ray atomic form factors or neutron scattering lengths, partial radial distribution functions (g_sel1,sel2 (r)), as well as decompositions of S (q) and S_sel1,sel2 (q) into various positive and negative components (each of which indicate periodic atomic ordering). Additionally, viewSq plots as a function of distance r the Fourier transform summands used to transform g (r) to S (q), allowing understanding of the atom-specific distances around atomic centers that contribute to S (q), S_sel1,sel2 (q), and their various positive and negative components. viewSq will also rank atoms by their contributions to S (q), S_sel1,sel2 (q), and the positive and negative components, and uses VMD to visualize those atoms interactively. Another feature performs the same rankings for atoms within a cutoff distance of a user-selected central atom, allowing the fundamental contributions atoms make with each other to be quantified and interactively visualized. Analysis may be done for any user-selected range of wavenumber (q) for a single structure or a small ensemble of structures. viewSq’s features are illustrated by using a single frame from an MD simulation of a box of water.
DOI: 10.17632/nzgxdwwt8k.2
title: Interpolation of dense and sparse rational functions and other improvements in FireFly

description: We present the main improvements and new features in version 2.0 of the open-source C++ library FireFly for the interpolation of rational functions. This includes algorithmic improvements, e.g. a hybrid algorithm for dense and sparse rational functions and an algorithm to identify and remove univariate factors. The new version is applied to a Feynman-integral reduction to showcase the runtime improvements achieved. Moreover, FireFly now supports parallelization with MPI and offers new tools like a parser for expressions or an executable for the insertion of replacement tables.
DOI: 10.17632/s9n36z5xxp.1
title: USP pump-probe interferometry - 2D Phase and 3D Voxel in Fused Silica

description: Video streams of calculated phase and voxel distribution of Fused Silica irradiated by ultra-short pulses (10 ps, 1064 nm)
DOI: 10.17632/s367bfmycp.2
title: Islamic Finance Modes in Islamic Banking Industry of Pakistan

description: Quarterly data of Islamic finance modes being used in the Islamic banking industry in Pakistan. The source of data is the Islamic banking bulletin quarterly issued by the Islamic banking department, state Bank of Pakistan.
DOI: 10.17632/t42s2fb2p8.1
title: Qualitative Database on Buffer Factores

description: The factor significance review comprised 94 studies. This brought additional studies to those used earlier in the quantitative review (limited to 75 studies documenting mass load reductions) and queried the findings differently. Sediment, nitrate, dissolved and total P were well-studied (≥35 each), total N and runoff volume moderately studied (≥19 studies each) and pesticides, ammonium and coliforms least studied (&lt;19 studies each), with only one study dealing with colloidal P. Evidence comes primarily from warm temperate climate zones, less from snow zone climates and most limited from arid and tropical regions. Studies described effects dominantly in simulated (ie a plot or soil monolith isolated from its landscape context) and created RBZ (a land change to a buffer in a realistic environmental context), with fewer studies in semi-natural riparian zones. There was a mixture of simulated or natural rainfall; only sediment retention evidence draws heavily on studies using artificial plots and/or simulated rain applications. A mixture of temporal scales was used; artificial plot studies tended to be of shorter duration with few isolated rain events, whereas studies of buffers in their landscape context tended to exceed one year. Study spatial scale was dominated more by plot scale investigations with fewer at reach to catchment scales.
DOI: 10.17632/23cd3k3s7v.1
title: raw data

description: PNKP raw data