cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14759670.v1
title: Additional file 7 of Chromosome-level genome assembly of a regenerable maize inbred line A188

description: Additional file 7. B73 genes overlapped with B73-specific sequences.
DOI: 10.6084/m9.figshare.7943933
title: Additional file 1: of LncRNA ENST00000539653 acts as an oncogenic factor via MAPK signalling in papillary thyroid cancer

description: Table S1. Patient demographic and baseline characteristics of the study population. Table S2. Demographic and baseline characteristics of papillary thyroid cancer patients selected for microarray profiling. Table S3. Sequences of lncRNAs. Table S4. Correlation of the expression of ENS-653 with clinicopathological features in TCGA PTC cohort. Table S5. Regression analysis of association of ENS653 level with BRAF (V600E) mutation or age in TCGA PTC cohort. (ZIP 67 kb)
DOI: 10.6084/m9.figshare.14759679.v1
title: Additional file 9 of Chromosome-level genome assembly of a regenerable maize inbred line A188

description: Additional file 9. CG DMRs between seedling and callus.
DOI: 10.6084/m9.figshare.14759661
title: Additional file 4 of Chromosome-level genome assembly of a regenerable maize inbred line A188

description: Additional file 4. CGRD output with B73Ref4 as the reference.
DOI: 10.6084/m9.figshare.14759667
title: Additional file 6 of Chromosome-level genome assembly of a regenerable maize inbred line A188

description: Additional file 6. A188 genes overlapped with A188-specific sequences.
DOI: 10.6084/m9.figshare.23148310
title: New paternity data from Reproductive inequality among males in the genus <i>Pan</i>

description: Reproductive inequality, or reproductive skew, drives natural selection, but has been difficult to assess, particularly for males in species with promiscuous mating and slow life histories, such as bonobos (<i>Pan paniscus</i>) and chimpanzees (<i>Pan troglodytes</i>). Although bonobos are often portrayed as more egalitarian than chimpanzees, genetic studies have found high male reproductive skew in bonobos. Here, we discuss mechanisms likely to affect male reproductive skew in <i>Pan</i>, then re-examine skew patterns using paternity data from published work and new data from the Kokolopori Bonobo Reserve, Democratic Republic of Congo and Gombe National Park, Tanzania. Using the multinomial index (<i>M</i>), we found considerable overlap in skew between the species, but the highest skew occurred among bonobos. Additionally, for two of three bonobo communities, but no chimpanzee communities, the highest ranking male had greater siring success than predicted by priority-of-access. Thus, an expanded dataset covering a broader demographic range confirms that bonobos have high male reproductive skew. Detailed comparison of data from <i>Pan</i> highlights that reproductive skew models should consider male–male dynamics including the effect of between-group competition on incentives for reproductive concessions, but also female grouping patterns and factors related to male–female dynamics including the expression of female choice.This article is part of the theme issue ‘Evolutionary ecology of inequality’.
DOI: 10.6084/m9.figshare.14759673
title: Additional file 8 of Chromosome-level genome assembly of a regenerable maize inbred line A188

description: Additional file 8. Normalized read counts from RNA-Seq of 11 tissues.
DOI: 10.6084/m9.figshare.7419734.v1
title: Two-scale topology optimization of macrostructure and porous microstructure composed of multiphase materials with distinct Poisson’s ratios

description: Abstract Negative Poisson’s ratio (NPR) material attracts a lot of attentions for its unique mechanical properties. However, achieving NPR is at the expense of reducing Young’s modulus. It has been observed that the composite stiffness can be enhanced when blending positive Poisson’s ratio (PPR) material into NPR material. Based on the respective interpolation of Young’s modulus and Poisson’s ratio, two concurrent topology optimization problems with different types of constraints, called Problem A and B, are respectively discussed to explore the Poisson’s ratio effect in porous microstructure. In Problem A, the volume constraints are respectively imposed on macro and micro structures; in Problem B, besides setting an upper bound on the total available base materials, the micro thermal insulation capability is considered as well. Besides considering the influence of micro thermal insulation capability on the optimized results in Problem B, the similar and dissimilar influences of Poisson’s ratios, volume fractions in Problem A and B are also investigated through several 2D and 3D numerical examples. It is observed that the concurrent structural stiffness resulting from the mixture of PPR and NPR base materials can exceed the concurrent structural stiffness composed of any individual base material.
DOI: 10.6084/m9.figshare.12135126.v1
title: Additional file 1 of Molecular characterization and expression analysis of pitaya (Hylocereus polyrhizus) HpLRR genes in response to Neoscytalidium dimidiatum infection

description: Additional file 1 Supplenmentary Information 1: Information of all of the 272 genes.
DOI: 10.6084/m9.figshare.12135132
title: Additional file 2 of Molecular characterization and expression analysis of pitaya (Hylocereus polyrhizus) HpLRR genes in response to Neoscytalidium dimidiatum infection

description: Additional file 2 Supplenmentary Information 2: Details information about the sequence characteristics of 233 LRR related-genes with the longest CDS.
DOI: 10.6084/m9.figshare.12135147
title: Additional file 4 of Molecular characterization and expression analysis of pitaya (Hylocereus polyrhizus) HpLRR genes in response to Neoscytalidium dimidiatum infection

description: Additional file 4 Supplenmentary Information 4: Sequences were identified as LRR family genes on each database.
DOI: 10.6084/m9.figshare.7419734
title: Two-scale topology optimization of macrostructure and porous microstructure composed of multiphase materials with distinct Poisson’s ratios

description: Abstract Negative Poisson’s ratio (NPR) material attracts a lot of attentions for its unique mechanical properties. However, achieving NPR is at the expense of reducing Young’s modulus. It has been observed that the composite stiffness can be enhanced when blending positive Poisson’s ratio (PPR) material into NPR material. Based on the respective interpolation of Young’s modulus and Poisson’s ratio, two concurrent topology optimization problems with different types of constraints, called Problem A and B, are respectively discussed to explore the Poisson’s ratio effect in porous microstructure. In Problem A, the volume constraints are respectively imposed on macro and micro structures; in Problem B, besides setting an upper bound on the total available base materials, the micro thermal insulation capability is considered as well. Besides considering the influence of micro thermal insulation capability on the optimized results in Problem B, the similar and dissimilar influences of Poisson’s ratios, volume fractions in Problem A and B are also investigated through several 2D and 3D numerical examples. It is observed that the concurrent structural stiffness resulting from the mixture of PPR and NPR base materials can exceed the concurrent structural stiffness composed of any individual base material.
DOI: 10.6084/m9.figshare.12135126
title: Additional file 1 of Molecular characterization and expression analysis of pitaya (Hylocereus polyrhizus) HpLRR genes in response to Neoscytalidium dimidiatum infection

description: Additional file 1 Supplenmentary Information 1: Information of all of the 272 genes.
DOI: 10.6084/m9.figshare.12135147.v1
title: Additional file 4 of Molecular characterization and expression analysis of pitaya (Hylocereus polyrhizus) HpLRR genes in response to Neoscytalidium dimidiatum infection

description: Additional file 4 Supplenmentary Information 4: Sequences were identified as LRR family genes on each database.
DOI: 10.6084/m9.figshare.12135150
title: Additional file 12 of Multiple links between 5-methylcytosine content of mRNA and translation

description: Table S6. Description of candidate sites analysed by amplicon bsRNA-seq. Each site is identified by genomic coordinates. Average non-conversion (MM) and average coverage (MCov) is given for the dataset indicated at the top. The Methyltransfrase identified to be responsible for methylation along with the sequence context of the candidate site are also indicated.
DOI: 10.5281/zenodo.10635093
title: data supporting auxetic granular metamaterials extended

description: Supporting data to the paper ' granular auxetic metamaterials'
DOI: 10.5281/zenodo.10635094
title: data supporting auxetic granular metamaterials extended

description: Supporting data to the paper ' granular auxetic metamaterials'
DOI: 10.5281/zenodo.10634290
title: JULES output from PRIME version 1

description: This is JULES output from the PRIME v1 framework in support of the PRIME documentation paper submitted to GMD. Data includes three SSP scenarios SSP1.2-6, SSP5.3-4-OS and SSP5.8-5 with data split into three tar files with an appropriate name for each scenario (Table 1). In each tarfile there are data for each of the 9 percentiles (Table 2) used for the analysis and each of the JULES output variables (Table 3) that are included in the paper. All are zipped netcdf files with naming convention as follows.

<scenario name> / <ensemble member number>_ssprcmip_<scenario name>_<variable>_ens.nc.gz

3 scenarios:




Scenario name used in data files
Scenario name used in paper


ssp126
SSP1-2.6




ssp534_over

SSP5-3.4-OS


ssp585
SSP5-8.5




Table 1: Scenario names used in datafiles and the corresponding name used in the paper.

9 ensemble members across the range of FaIR outputs: 




Percentile
Ensemble member


0.0
431


0.01
2037


0.05
1669


0.25
2236


0.5
1469


0.75
1523


0.95
1294


0.99
1015


1.0
1251




Table 2: List of percentiles and their appropriate ensemble member (the ensemble members are used in filenames)

JULES output variables used in paper:




Variable notation in filename
Variable definition in JULES userguide. 


precip
Gridbox precipitation rate  (kg m-2 s-1).


t1p5m_gb
Gridbox temperature at 1.5m (K)


cv
Gridbox mean vegetation carbon at end of model timestep (kg m-2)


frac
Fractional cover of each surface type.


resp_s_to_atmos_gb
Respired carbon from soil carbon emitted to atmosphere (kg m-2 s-1).


gpp_gb
Gridbox gross primary productivity of biomass expressed as carbon (kg m-2 s-1).


npp_n_gb
Gridbox net primary productivity of biomass expressed as carbon after nitrogen limitation (kg C m-2 (360days)-1).


runoff
Gridbox runoff rate (kg m-2 s-1).




Table 3: List of JULES variables included in the dataset. The JULES variable names are abbreviated in the filenames, this table translates what the name given in the filename means in terms of the data provided.
DOI: 10.6084/m9.figshare.23301416
title: List of patient/isolates

description:  List of the patients and their isolates
DOI: 10.6084/m9.figshare.23301416.v3
title: List of patient/isolates

description:  List of the patients and their isolates
DOI: 10.6084/m9.figshare.23301416.v4
title: List of patient/isolates

description:  List of the patients and their isolates
DOI: 10.6084/m9.figshare.12135132.v1
title: Additional file 2 of Molecular characterization and expression analysis of pitaya (Hylocereus polyrhizus) HpLRR genes in response to Neoscytalidium dimidiatum infection

description: Additional file 2 Supplenmentary Information 2: Details information about the sequence characteristics of 233 LRR related-genes with the longest CDS.
DOI: 10.6084/m9.figshare.12135150.v1
title: Additional file 12 of Multiple links between 5-methylcytosine content of mRNA and translation

description: Table S6. Description of candidate sites analysed by amplicon bsRNA-seq. Each site is identified by genomic coordinates. Average non-conversion (MM) and average coverage (MCov) is given for the dataset indicated at the top. The Methyltransfrase identified to be responsible for methylation along with the sequence context of the candidate site are also indicated.
DOI: 10.6084/m9.figshare.22620919
title: Additional file 2 of Residual periodontal ligament in the extraction socket promotes the dentin regeneration potential of DPSCs in the rabbit jaw

description: Additional file 2: Differentially expressed mRNAs in DPSCs regulated by PDLSCs.
DOI: 10.6084/m9.figshare.22620922
title: Additional file 3 of Residual periodontal ligament in the extraction socket promotes the dentin regeneration potential of DPSCs in the rabbit jaw

description: Additional file 3: Differentially expressed lncRNAs in DPSCs regulated by PDLSCs.
DOI: 10.15156/bio/sh0975000.09fu
title: SH0975000.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0975001.09fu
title: SH0975001.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0975002.09fu
title: SH0975002.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25381/cput.22491817
title: Employability of Youth Focus Project level 1 graduates within the Wholesale and Retail Sector, Western Cape, South Africa.

description: South Africa has been grappling with a surge in the number of youth entering the labour market, combined with the reality that the unemployment rate is one of the highest in developing countries. Youth unemployment prohibits the younger generation from gaining an opportunity to sustain themselves and, thereby contribute meaningfully to the development of a nation. Uploaded is the dataset for a Master of Human Resources Management thesis titled, "Employability of Youth Focus Project level 1 graduates within the Wholesale and Retail sector, Western Cape, South Africa". A questionnaire served as the only data collection instrument. The questionnaire statements were divided into three categories extracted from the literature review. Each of the categories consisted of statements upon which members of the research sample were requested to express an opinion ( quantitative data) linked with probing questions to obtain in-depth information upon the research topic (qualitative data).
DOI: 10.25381/cput.22491817.v1
title: Employability of Youth Focus Project level 1 graduates within the Wholesale and Retail Sector, Western Cape, South Africa.

description: South Africa has been grappling with a surge in the number of youth entering the labour market, combined with the reality that the unemployment rate is one of the highest in developing countries. Youth unemployment prohibits the younger generation from gaining an opportunity to sustain themselves and, thereby contribute meaningfully to the development of a nation. Uploaded is the dataset for a Master of Human Resources Management thesis titled, "Employability of Youth Focus Project level 1 graduates within the Wholesale and Retail sector, Western Cape, South Africa". A questionnaire served as the only data collection instrument. The questionnaire statements were divided into three categories extracted from the literature review. Each of the categories consisted of statements upon which members of the research sample were requested to express an opinion ( quantitative data) linked with probing questions to obtain in-depth information upon the research topic (qualitative data).
DOI: 10.15156/bio/sh0975003.09fu
title: SH0975003.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0975004.09fu
title: SH0975004.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0975005.09fu
title: SH0975005.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0975006.09fu
title: SH0975006.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0975007.09fu
title: SH0975007.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.