cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25424617.v1
title: Phonax datasets and model weights

description: Phonax datasets and pre-trained model weights download
DOI: 10.6084/m9.figshare.5620756.v1
title: Supplementary Material for: The Impact of Tumor Necrosis Factor-α and Interleukin-1β Levels and Polymorphisms on Long-Term Stroke Outcomes

description: <b><i>Background:</i></b> The accuracy of predictions regarding disability that sets in after stroke could be improved by using blood biomarker measurements. This study aimed to investigate the roles of serum tumor necrosis factor alpha (TNF-α) and interleukin (IL)-1β concentrations and polymorphisms in stroke outcomes. <b><i>Methods:</i></b> In total, 286 patients were evaluated at the time of admission and at 2 weeks after stroke, and 222 of these patients (78%) were followed up for 1 year to evaluate the consequences of stroke during both the acute and chronic stages. Stroke outcomes were dichotomized into good and poor using the modified Rankin Scale. <b><i>Results:</i></b> The association of TNF-α and IL-1β concentrations and their corresponding genotypes with stroke outcomes was investigated using multivariate logistic regression. Higher TNF-α levels were associated with poor outcomes 1 year after stroke in the presence of the –850<i>T</i> and –308<i>A</i> alleles, and IL-1β levels were associated with poor 1-year stroke outcomes in the presence of the –511<i>T</i> and +3953<i>T</i> alleles. No such associations were found at 2 weeks after stroke. <b><i>Conclusions:</i></b> These data provide evidence that serum TNF-α and IL-1β concentrations are related to poor long-term outcomes after stroke in the presence of particular alleles.
DOI: 10.6084/m9.figshare.24874107.v1
title: miR34_PCA_plot

description: miR34_PCA_plot
DOI: 10.6084/m9.figshare.6542681.v1
title: Supplementary Material for: Increased Expression of Programmed Death-Ligand 1 in Infiltrating Immune Cells in Hepatocellular Carcinoma Tissues after Sorafenib Treatment

description: <b><i>Objective:</i></b> Programmed death-ligand 1 (PD-L1) expression in the tumor microenvironment (TME) has been reported to be related to prognosis in patients with hepatocellular carcinoma (HCC) after hepatectomy. The impact of sorafenib on PD-L1 expression in the TME of advanced HCC is unclear. <b><i>Patients and Methods:</i></b> Patients with HCC who received sorafenib for advanced disease at National Taiwan University Hospital, Taipei, Taiwan, and who had paired HCC tissues obtained before and after sorafenib treatment were included in the study group. HCC patients not treated with sorafenib who had paired primary and recurrent or metastatic tissues were identified as the reference group. The membrane PD-L1 staining, detected by immunohistochemistry (IHC) using SP142 antibody, was semiquantitatively scored in tumor cells (TCs) or tumor-infiltrating immune cells (ICs). Additional IHC assays were employed to characterize the PD-L1-expressing ICs. <b><i>Results:</i></b> Twenty-three advanced HCC patients with pre- and post-sorafenib paired HCC tissues were included in the study group. The median duration of sorafenib treatment was 4.3 months (range: 1.3–18.7). PD-L1 expression in ICs was significantly higher in post-sorafenib HCC tissues than in pre-sorafenib HCC tissues (pre-sorafenib vs. post-sorafenib IHC 0/1/2/3: 11/5/5/2 vs. 5/5/2/11, <i>p</i> = 0.016). However, PD-L1 expression in TCs was not significantly different between pre- and post-sorafenib tissues (IHC 0/1/2/3: 19/2/0/2 vs. 14/5/0/4, <i>p</i> = 0.094). In the reference group of 44 patients not treated with sorafenib, PD-L1 expression in ICs and TCs was not significantly different between the paired primary and<i></i> metastatic HCC tissues. By performing IHC double staining with PD-L1 and CD68, we found the PD-L1-expressing ICs were mainly CD68-positive macrophages. PD-L1 expression levels of pre- and post-sorafenib tissues were not associated with patients’ overall survival or duration of sorafenib treatment. <b><i>Conclusions:</i></b> PD-L1 expression in ICs was significantly increased in post-sorafenib HCC tissues. The mechanisms and clinical significance of this observation warrants further investigation.
DOI: 10.6084/m9.figshare.20529015.v1
title: Supplementary Material for: Perceived Stress and Coping Strategies among Nursing Students during the COVID-19 Pandemic: A Systematic Review

description: <b><i>Background and Objective:</i></b> Stress is common among nursing students, especially during COVID-19, because of direct contact with patients, so they need to cope with the stressors. The aim of this systematic review was to assess the level of perceived stress and coping strategies by nursing students during the COVID-19 pandemic. <b><i>Material and Methods:</i></b> Databases such as MEDLINE, PubMed, ScienceDirect, Cochrane Library, and Web of Science were searched using keywords. The authors used keywords (perceived stress, coping strategies or resilience, and nursing students). The language was restricted to English. The studies, conducted between December 2019 and December 2021, were included. The full articles were checked for eligibility. The reference manager software EndNote X4 was used for sorting and managing studies. This systematic review was registered on PROSPERO with a number: CRD42021267791. <b><i>Results:</i></b> Five studies were included in this review: the first study, from the Philippines, showed that levels of stress and coping strategies were estimated to be 79% and 76.8%, respectively; the second study, from Saudi Arabia, found that the rate of stress among nursing students was 30.9% with several strategies for coping, while the other study from Saudi Arabia showed that the stress level is 1.32 (low stress) and 1.95 (moderate stress) with different coping strategies (avoidance 1.47, problem solving 2.09, stay optimistic 2.06, and transference 1.87); the fourth study from the USA showed that the rate of stress is high 24.7%, with high levels of resilience among nursing students; and the fifth study showed that the rate of stress is 20.94 in the UK and 21.54 in China, with a resilience of 26.70 in the UK and 25.18 in China. <b><i>Conclusion:</i></b> The current systematic review showed that nursing students have a high level of stress in all included countries (the Philippines, Saudi Arabia, the USA, the UK, and China), and they developed appropriate coping strategies to face the situation.
DOI: 10.6084/m9.figshare.24221161.v1
title: Digitized in SEG-Y format of the old reflection seismic profiles of the Granada Basin.

description: The old reflection seismic profiles of the Granada Basin have been converted into digital format using the SEG-Y standard.
DOI: 10.17605/osf.io/cu6k9
title: Climate change, health, and equity
DOI: 10.6084/m9.figshare.13020545.v1
title: groundbased_ftir.c2h6_aiofm001_hefei_20150729-20191231

description: The first data of C<sub>2</sub>H<sub>6</sub> observed by high-resolution FTIR Over Hefei, China.
DOI: 10.6084/m9.figshare.24203943.v1
title: Table 2. Categories and codes related with the discurss of the participants.

description: Table 2. Categories and codes related with the discurss of the participants.
DOI: 10.6084/m9.figshare.28767299.v1
title: RL4QE

description: A Reinforcement Learning framework for Large Language Models (LLMs), focusing on code generation tasks. This repository implements various RL training methods to enhance LLMs' ability to generate high-quality code based on user queries.
DOI: 10.17632/bd6sf3fw65
title: Data for archaeological organic remains, retrieved through water flotation from the Late Hellenistic site of Sexaginta Prista, Northern Bulgaria: plant remains, fish scales and molluscs (field campaigns in 2018 and 2021)

description: The current data set contains four spreadsheets presenting the data which the analysis of environmental samples of Late Hellenistic Sexaginta Prista (Northern Bulgaria) provided and captures two excavation seasons (2018 and 2021). Environmental sampling at archaeological sites consists of soil sampling and the samples’ processing through water flotation, separating different sediment fractions. Within those fractions, diverse organic remains were retrieved and analysed, including archaeobotanical macro-remains (seeds and wood charcoal), fish scales, bones, and freshwater molluscs. The above-described bio-archaeological remains are organised in the dataset attached here.
DOI: 10.17632/tfbh8vsrkz
title: Alexithymia, negative affect and disordered eating 

description: Data included in PROCESS mediation showing the direct and indirect effects, via negative affect, of alexithymia on symptoms of disordered eating in a non-clinical sample
DOI: 10.6084/m9.figshare.22242262.v2
title: 2025-2060中国收入结构预测结果（省级） 2025-2060 China Income Structure projection results (Provincial)

description: 此数据集为2025-2060中国省级收入结构预测结果，格式为xlsx。 This dataset is the results of the 2025-2060 China provincial income structure projections in xlsx format. <br> 当目前人类活动已经成为全球环境变化的主要驱动力。作为世界上人口最多的国家，中国应当在世界的可持续发展与气候变化领域做出更多的贡献。2020年9月22日，国家主席习近平提出了中国的“双碳发展目标”，为中国未来的发展指明了方向。城市是人类生产生活最为集中的区域，中国的城市能源消耗占据了全国能源消耗的85%，因此我们认为中国的低碳转型关键在于城市。进一步，城市的发展关键在于人口的变化，不同年龄结构，不同社会背景的人有着不同的城市管理服务与能源利用的需求，进而影响着未来的城市管理和城市建设。中国正处于城镇化的下半场，在人口老龄化背景下不同区域的人口结构将发生重大变化，如何对未来的人口结构进行判定，进而对未来的社会需求做出判断，以实现未来中国的低碳发展，是非常值得探索的议题。在这样的背景下，能源基金会资助清华大学建筑学院龙瀛团队与中国人民大学环境学院王克团队，针对上述问题开展深入分析。在前期项目中，龙瀛团队基于全球空间人口网格数据和中国政府统计数据，对中国的未来人口分布进行了情景预测。但是人口分布的预测，缺乏人口结构的相关信息，因此不能更精确更量化地判断不同人的需求。 因此在本项目中，项目组希望进一步地完善人口结构方面的预测，同现有人口分布数据相匹配，进而为碳排放、环境治理等研究方向提供更精确更细致的数据支持。 Human activities have now become a major driver of global environmental change. As the world's most populous country, China should make more contributions to the world's sustainable development and climate change. On September 22, 2020, President Xi Jinping proposed China's "Two Carbon Development Goals", which will set the direction for China's future development. Cities are the most concentrated areas of human production and life, so we believe that the key to China's low-carbon transition lies in cities. Further, cities are for people, so human needs determine the energy consumption of the city. People of different age structures and social backgrounds have different needs for urban management services and energy use, which in turn affects future urban management and urban construction. It is worthwhile to explore how to determine the future demographic structure and then make a judgment on the future social needs to realize the future low-carbon development of China. <br>
DOI: 10.6084/m9.figshare.9772073.v1
title: Supplementary Material for: Portuguese Society of Gastroenterology Consensus on the Diagnosis and Management of Hemorrhoidal Disease

description: Hemorrhoidal disease (HD) is a frequent health problem with considerable repercussions on patients’ quality of life. However, much of the clinical practice related to HD is based on knowledge without scientific evidence and supported largely by empirical experience of the physician who deals with this pathology. As in other countries, the goal of this consensus is to establish statements supported by solid scientific evidence and whose purpose will be to standardize and guide the diagnosis and management of HD both in the general population and in some particular groups of patients.
DOI: 10.6084/m9.figshare.10266314.v1
title: Acanthoscurria geniculata transcriptome assembled from mixed embryonic tissue

description: Transcriptome assembly of mixed embryonic Acanthoscurria geniculata<br><br>As described in <br>Embryonic development and secondary body axis induction in the Brazilian white knee tarantula Acanthoscurria geniculata, C. L. Koch, 1841 (Araneae; Mygalomorphae; Theraphosidae). <br><br>By Matthias Pechmann<br>
DOI: 10.6084/m9.figshare.20499747.v1
title: Table S1-S5 (Yaling Tao).xlsx

description: This dataset belongs to the manuscript entitled "<em>Middle-Late Cenozoic stepwise deformation propagation in eastern Tibet</em>" by Tao Yaling
DOI: 10.6084/m9.figshare.28694144.v1
title: Predicting the Activation Temperature of 4D-Printed Parts through Machine Learning Algorithms with a Sparse Dataset-Supplementary Information.docx

description: This study aimed to predict the glass transition temperature (T<sub>g</sub>) of 4D-printed shape memory polymers (SMPs) using machine learning while considering 4D printing process parameters and resin composition ratios with a limited dataset. The T<sub>g</sub> plays a crucial role in shape recovery, as it represents the activation temperature of 4D-printed SMPs, thus necessitating accurate predictions. However, while previous studies have applied machine learning models to predict strain and recovery stress, the effects of fabrication parameters on T<sub>g</sub> have not been sufficiently explored. To address this gap, this study developed a predictive model, integrating both resin composition ratios and post-processing parameters, to estimate T<sub>g</sub>. Five machine learning models were trained and evaluated using data from Graeco-Latin square design and one-factor-at-a-time experimental design. Among these, support vector regression demonstrated the highest prediction accuracy (MAE: 1.06, MSE: 2.62), making it the most suitable model. Additionally, the trend of the predicted T<sub>g</sub> aligned closely with findings from previous studies, further validating the approach. It proposes a predictive model that enables the efficient optimization of 4D printing materials using a small experimental dataset. By leveraging this approach, both experimental time and cost can be reduced significantly while permitting precise material design and process control.
DOI: 10.6084/m9.figshare.28715006.v2
title: <b>DNA signaturing database for Scenedesmaceae</b>

description: DNA signaturing database for Scenedesmaceae
DOI: 10.6084/m9.figshare.23805990.v4
title: <b>Complex sex chromosome evolution in a haploid plant lineage</b>

description: <b>Complex sex chromosome evolution in a haploid plant lineage</b>Please do not hesitate to contact the email addresses fuyuan@ibcas.ac.cn or abysw@abysw.com if you have any questions.Please cite our new paper when you use this data.
DOI: 10.6084/m9.figshare.1450709.v1
title: Data from “Environmental correlates of species rank – abundance distributions in global drylands”

description: Data from Ulrich, W., S. Soliveres, A. Thomas, A. Dougill & F. T. Maestre. Environmental correlates of species rank – abundance distributions in global drylands. <i>Perspectives in Plant Ecology, Evolution and Systematics</i>, doi:10.1016/j.ppees.2016.04.004<br><br>There are two spreadsheets with data. The spreadsheet "Data" contains the data used in the manuscript. The spreadsheet "Metadata" contains the associated metadata, where a description of all the variables and units can be found. All the methodological details can be found in the article.<br>
DOI: 10.6084/m9.figshare.19074476.v2
title: <b>Weibo Topic Data of the </b><b>M5.7</b><b> Yibin Earthquake</b>

description: <b>Disclaimer: This data is only for academic research and is not intended for commercial or other purposes.</b><b> </b><b>If you want to cite this data, please apply to the author for approval first.</b>Through the topic crawler on Weibo, I crawled the topic data of the earthquake with a magnitude of 5.7 in Yibin, China, to visualize the earthquake network public opinion, and further study the dissemination and influencing factors of the earthquake network public opinion. I declare that the data is only for academic research and not for commercial use, thank you for your understanding!
DOI: 10.6084/m9.figshare.20017739.v1
title: Production of Piptadenia stipulacea (Benth.) Ducke seedlings irrigated with fish farming wastewater

description: ABSTRACT The objective of this study was to evaluate the growth of ‘jurema-branca’ seedlings (Piptadenia stipulacea (Benth.) Ducke.), irrigated with effluent from fish farming in order to meet the nutritional demand in the initial growth stage. The treatments consisted in the dilution of fish farming wastewater in different concentrations (0, 25, 50, 75 and 100%) with supply water. Seeds were sown in 0.9-L polyethylene bag containing a mixture of soil and manure. At 54 days after sowing the shoot length, stem diameter, height/diameter ratio, number of leaves, leaf area, unit leaf area, dry matter of stem, leaves, shoots, roots and total, chlorophyll content index and Dickson quality index were evaluated. The growth of ‘jurema-branca’ seedlings is favored by the dilution of 25% of fish farming wastewater in the supply water. Using up to 25% of the concentration of the fish farming effluent does not significantly affect the dry biomass accumulation in ‘jurema-branca’ seedlings, in relation to the control. The reuse of fish farming wastewater diluted at proportion of up to 25% is a viable alternative to meet the water demand in the production of forest seedlings.
DOI: 10.6084/m9.figshare.28722125.v1
title: Table_S6.enr_impl_GO.csv

description: <b>Table S6. </b>Gene Set Enrichment Analysis (GSEA) in implanted GL261-GSCs, shown in Figure 3C.
DOI: 10.6084/m9.figshare.23691846.v2
title: Annotation and characteristics.xlsx

description: Hypericum perforatum transcripts obtained using PacBio Iso-seq protocol, with annotation and characteristics
DOI: 10.6084/m9.figshare.24917568.v1
title: <b>Sex differences and individual variability in the captive Jamaican fruit bat (Artibeus jamaicensis) intestinal microbiome and metabolome</b>

description: The intestinal microbiome plays an important role in mammalian health, disease, and immune function. In light of this function, recent studies have aimed to characterize the microbiomes of various bat species, which are noteworthy for their roles as reservoir hosts for several viruses known to be highly pathogenic in other mammals. Despite ongoing bat microbiome research, its role in immune function and disease, especially the effects of changes in the microbiome on host health, remains nebulous. Here, we describe a novel methodology to investigate the intestinal microbiome of captive Jamaican fruit bats (Artibeus jamaicensis). We observed a high degree of individual variation in addition to sex- and cohort-linked differences. The intestinal microbiome was correlated with intestinal metabolite composition, possibly contributing to differences in immune status. This work provides a basis for future infection and field studies to examine in detail the role of the intestinal microbiome in antiviral immunity.
DOI: 10.25442/hku.20039540.v1
title: Supporting data for “Skyrmion-Based Magnetic Devices for Advanced Spintronic Applications”.

description: The magnetic skyrmions have been regarded as a good candidate for the next-generation spintronic devices because of its unique properties. During my research, I investigate both skyrmion static and dynamic properties. And designing the skyrmion-based spin-torque nano-oscillator with two structures to maintain skyrmion stable circular motion. Some materials parameters have also been discussed.
DOI: 10.25452/figshare.plus.22277668.v1
title: RGB and Depth videos directory

description: <b>Directory content</b>: This directory contains 38 .MP4 files with videos (recorded at 30 Hz) showing drivers’ movements and body position while driving. Those videos are presented both in colored/RGB (19; ID_Number_ColorCameraVideoMask) and B&W versions (19; ID_Number_DepthCameraVideo). The RGB video were pre-processed to insert a blurred mask on participants’ face to preserve anonymity through a customized Matlab script (Mathworks Inc., Natick,MA, USA). We also included the metadata .CSV files for both colored (19; ID_Number_ColorCameraVideoMetaData) and B&W (19; ID_Number_DepthCameraMetaData) videos. Due to absence of consent to having their personal images disseminated (drivers IDs #66 and 78), four .MP4 files and four .CSV files have not been included.<b>Method and instruments</b>: To record RGB and depth videos, we used a depth camera (Intel® Realsense D435 model, 1080p, 15-megapixel HD resolution, infrared RGB camera; Intel Corporation, Santa Clara, CA, US). The camera (resolution of 1920× 1080 pixels) was placed on a support ∼150 cm above the moving platform and ∼130 cm from the driver's face (angled from above ∼30°). The recorded signal was continuous.
DOI: 10.6084/m9.figshare.14571786.v1
title: Supplementary Material for: Diffusion Tensor Imaging Reveals Whole-Brain Microstructural Changes in the P301L Mouse Model of Tauopathy

description: <b><i>Introduction:</i></b> Increased expression of hyperphosphorylated tau and the formation of neurofibrillary tangles are associated with neuronal loss and white matter damage. Using high-resolution ex vivo diffusion tensor imaging (DTI), we investigated microstructural changes in the white and grey matter in the P301L mouse model of human tauopathy at 8.5 months of age. For unbiased computational analysis, we implemented a pipeline for voxel-based analysis (VBA) and atlas-based analysis (ABA) of DTI mouse brain data. <b><i>Methods:</i></b> Hemizygous and homozygous transgenic P301L mice and non-transgenic littermates were used. DTI data were acquired for generation of fractional anisotropy (FA), mean diffusivity (MD), radial diffusivity (RD), and axial diffusivity (AD) maps. VBA on the entire brain was performed using SPM8 and the SPM Mouse toolbox. Initially, all DTI maps were coregistered with the Allen mouse brain atlas to bring them to one common coordinate space. In VBA, coregistered DTI maps were normalized and smoothed in order to perform two-sample and unpaired <i>t</i> tests with false discovery rate correction to compare hemizygotes with non-transgenic littermates, homozygotes with non-transgenic littermates, and hemizygotes with homozygotes on each DTI parameter map. In ABA, the average values for selected regions of interests were computed with coregistered DTI maps and labels in Allen mouse brain atlas. Afterwards, a Kruskal-Wallis one-way ANOVA on ranks with a Tukey post hoc test was executed on the estimated average values. <b><i>Results:</i></b> With VBA, we found pronounced and brain-wide spread changes when comparing homozygous, P301L mice with non-transgenic littermates, which were not seen when comparing hemizygous P301L with non-transgenic animals. Statistical comparison of DTI metrics in selected brain regions by ABA corroborated findings from VBA. FA was found to be decreased in most brain regions, while MD, RD, and AD were increased in homozygotes compared to hemizygotes and non-transgenic littermates. <b><i>Discussion/Conclusion:</i></b> High-resolution ex vivo DTI demonstrated brain-wide microstructural and gene-dose-dependent changes in the P301L mouse model of human tauopathy. The DTI analysis pipeline may serve for the phenotyping of models of tauopathy and other brain diseases.