cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7m0cfxq59
title: The violation of Bell inequality in frustrated interference

description: This dataset supports the study of multi-photon frustrated interference in
 a nonlinear quantum interferometer, demonstrating violations of Bell
 inequalities using unentangled photons. It includes raw photon coincidence
 counts recorded by a time-correlated single-photon counting (TCSPC)
 system, as well as detailed experimental parameters. The data provides a
 resource for further analysis of nonclassical interference effects and for
 validating theoretical models in quantum foundations.
description: The dataset was collected in a nonlinear quantum interferometer.
 Photon arrival times were recorded with a time-correlated single-photon
 counting (TCSPC) system. Coincidence counts were obtained by comparing the
 arrival times of photons. During the experiment, the interferometer’s
 internal phases were precisely controlled to explore different
 interference conditions. The coincidence counts were measured for various
 phase settings in the interferometer. The raw coincidence counts were
 analyzed to calculate correlations between the photon detection events.
 These correlations were then used to evaluate the CHSH inequality under
 different phase configurations. The dataset provides the raw counts
 alongside the experimental parameters required for further
 analysis.
description: # The violation of Bell inequality in frustrated interference
 [https://doi.org/10.5061/dryad.7m0cfxq59](https://doi.org/10.5061/dryad.7m0cfxq59) ## Description of the data and file structure This dataset was collected as part of an experimental investigation into nonlinear quantum interference phenomena. The study aimed to demonstrate violations of the CHSH inequality using unentangled photons in the frustrated interference. By controlling the interferometer’s internal phases, the experiment explored the relationship between multi-photon interference and quantum correlations.  ### Files and variables #### File: VBI_Coincidence_20230707.dat **Description:**  Two-dimensional table: * Columns 1-2: Motorized stage positions (Alice, Bob); * Columns 3-4: Piezoelectric translation stage positions (Alice, Bob); * Remaining columns: Single counts and coincidence counts; Columns 5-8: Single counts on channels 1, 2, 3, 4; Column 9: Coincidence of channels 1, 2, 3, and 4; Column 10: Coincidence of channels 1 and 2; Column 11: Coincidence of channels 3 and 4; ## Code/software The code is a MATLAB script that processes the data file. The code contains detailed comments for clarification.
DOI: 10.5061/dryad.mcvdnck92
title: Data and code from: Mechanisms of community assembly through the lens of phylogenetic diversity: A critical reappraisal

description: Darwin was one of the first to hypothesize a connection between niche
 differentiation and competition and species relatedness, offering an
 appealing framework to disentangle the processes involved in community
 assembly based on their phylogenetic structure. Community assembly is,
 however, the result of several processes, including potentially
 confounding factors associated with dispersal limitations and spatial
 effects, casting doubt about the application of phylogenetic diversity
 metrics to infer community assembly processes. We implemented a
 spatially-explicit model involving limited dispersal, drift, trait-based
 selection, and competition to simulate community composition under
 competing assembly processes in a landscape with contrasted habitat
 connectivity. Our results formalize the idea
 that habitat selection and limiting similarity leave a
 significant signature in the phylogenetic structure of communities. We
 identify the phylogenetic diversity metrics that best perform to retrieve
 community assembly processes, but raise caution regarding their
 interpretation, which can be misleading due to spatial effects.
description: This dataset was simulated. 
description: The coMet pipeline (standing for **COM**munity **MET**rics) is a pipeline
 developed to create communities following assembly rules and compute
 phylogenetic diversity metrics based on these communities. It is written
 mainly in R (the community simulator is written in C) and operated by
 command line. It is, by nature, designed to be launched on remote machines
 in slurm environment to create numerous replicates. However, it is
 possible to operate it completely on local machines. All
 "tar.gz" files are the simulated datasets of all scenarios used
 in the manuscript. TO USE IT: The first step is the modification of the
 default configuration file "Foo.R" following the user's
 needs. This configuration file will be used to pilot the pipeline. The
 second step is to launch the pipeline using this command line:
 ./Bash_coMet_Pipeline.sh Foo.R "Foo" The first argument is the
 name of the configuration file, and the second argument is the name of the
 Scenario. NOTES: * Script 1 and 6 are designed to be used on a -slurm-
 remote machine to allow the creation of multiple replicates. However, you
 can still launch these two script for one replicate at a time on your
 local machine. * More details on the parameters and the pipeline usage
 directly in the "Foo.R" and "Bash_coMet_Pipeline.sh"
 scripts. DATA: The data "coMet_*ComSim*_Outputs.zip" represent
 standard outputs for all the procedure.
DOI: 10.15468/dl.58xxzt
title: Occurrence Download

description: A dataset containing 35996 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is Gerridae"
 ]
}

 The dataset includes 35996 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004212-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13906835
title: Software Engineering Practitioners' Perception of Gamifying Video-based Soft Skills Training

description: This repository contains supplementary material for the manuscript "Software Engineering Practitioners' Perception of Gamifying Video-based Soft Skills Training":



Survey Data.xlsx: Survey data collected from respondents on Prolific, along with a mapping of their roles into technical and non-technical categories.

Screenshots.zip: Respondents modified images of the video-based platform. 

Perception of Software Professionals on Gamifying Video-based Soft Skills Training - supplementary material.pdf:  Additional details of the study design, data, and the results not covered in the manuscript.

Participant Countries.txt: This file lists the countries of the participants included in the study
DOI: 10.5281/zenodo.17705889
title: Software Engineering Practitioners' Perception of Gamifying Video-based Soft Skills Training

description: This repository contains supplementary material for the manuscript "Software Engineering Practitioners' Perception of Gamifying Video-based Soft Skills Training":



Survey Data.xlsx: Survey data collected from respondents on Prolific, along with a mapping of their roles into technical and non-technical categories.

Screenshots.zip: Respondents modified images of the video-based platform. 

Perception of Software Professionals on Gamifying Video-based Soft Skills Training - supplementary material.pdf:  Additional details of the study design, data, and the results not covered in the manuscript.

Participant Countries.txt: This file lists the countries of the participants included in the study
DOI: 10.15468/dl.ta3xzr
title: Occurrence Download

description: A dataset containing 53992 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pharomachrus mocinno"
 ]
}

 The dataset includes 53992 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004180-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhtkrv
title: Occurrence Download

description: A dataset containing 395953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Odontophoridae",
 "Year 2024-2026"
 ]
}

 The dataset includes 395953 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004162-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.x69p8czv0
title: Data for: The 3-dimensional genome drives the evolution of asymmetric gene duplicates via enhancer capture-divergence

description: Previous models of duplication-based new gene evolution have overlooked
 the role of genome architecture. The enhancer-capture divergence model
 provides a one-step mechanism for altering the expression of a
 pre-existing protein. By duplicating into a region of the genome that is
 under the influence of a pre-existing enhancer, distal duplication of an
 existing gene provides for immediate augmentation of spatiotemporal
 expression of the existing gene. In the related manuscript, we examine the
 local chromosomal conformations for a newly evolved gene HP6/Umbrea, which
 appears to have undergone the enhacer-capture divergence process. While
 all data from the associated manuscript are publicly available through
 permanent NCBI repositories, additional related 4C-Seq data was generated
 but did not appear in the final manuscript. The following data set
 consists of 1) raw reads from 4C-Seq experiments performed on D.
 melanogaster, D. yakuba, D. erecta, and D. pseudoobscura for HP6/Umbrea
 and a neighboring locus, 2) barcodes for de-multiplexing the reads, and 3)
 code for running analyses from the related manuscript.
description: Imaginal disc tissue from 4 species was extracted from L3
 wandering larvae. A standard 4C-Seq protocol was performed with a primary
 digest of DpnII and a secondary digest of Csp6i. Further details may be
 found in the associated manuscript.
description: # Data for: The 3-dimensional genome drives the evolution of asymmetric
 gene duplicates via enhancer capture-divergence ## Description of the data
 and file structure Raw reads for S2 cells (UL-4C_S2_L002_R1_001.fastq) and
 imaginal disc (UL4-PhIX_S1_R1_001.fastq) are provided. Barcodes for
 de-multiplexing are provided (4c_s2_barcodes.txt for S2, barcode.txt for
 imaginal disc). 4C-Seq for S2 cells was performed for CG7041 and
 HP6/Umbrea. 4C-Sq was performed for imaginal disc tissue for HP6/Umbrea
 and neighboring locus (see related manuscript) in *D. melanogaster*, *D.
 yakuba*, *D. erecta*, and *D. pseudoobscura* (future insertion locus).
 Scripts for Lee, Arsala, and Xia et al. are also provided. Data was
 generated from: * S2 cells * *D. melanogaster* imaginal disc tissue * *D.
 yakuba* imaginal disc tissue * *D. erecta* imaginal disc tissue * *D.
 pseudoobscura* imaginal disc tissue ## Code/Software Scripts for all
 analyses. ## Access information Other publicly accessible locations of
 scripts: *
 [https://github.com/ulee-sciscripts/enh_cap_div_scripts](https://github.com/ulee-sciscripts/enh_cap_div_scripts)
DOI: 10.5061/dryad.3xsj3txrq
title: Increasing rat numbers in cities are linked to climate warming, urbanization and human population

description: Urban rats are notorious invasive pests that thrive in cities by
 exploiting the resources accompanying high human population density.
 Identifying long-term trends in rat numbers and how they are shaped by
 environmental changes is critical for understanding their ecology, and
 projecting future vulnerabilities and mitigation needs. Here, we use trend
 analyses of public complaint and inspection data in 16 cities around the
 world to estimate trends in commensal rat populations. Eleven of 16 cities
 (69%) had significant increasing trends in rat numbers, including
 Washington D.C., New York, and Amsterdam. Just three cities experienced
 declines. Cities experiencing greater temperature increases over time saw
 larger increases in rat numbers. Cities with more dense human populations
 and more urbanization also saw larger increases in rats. Warming
 temperatures and more people living in cities may be expanding the
 seasonal activity periods and food resource availability for urban rats.
 Cities will have to integrate the biological impacts of these variables
 into any future management strategies.
description: # Increasing rat numbers in cities are linked to climate warming,
 urbanization and human population
 [https://doi.org/10.5061/dryad.3xsj3txrq](https://doi.org/10.5061/dryad.3xsj3txrq) ## Description of the data and file structure The dataset consists of an Excel file (with two sheets such as data and metadata). ### Files and variables #### File: Richardson\_et\_al\_ScienceAdv\_wild\_rat\_trend\_analysis\_data\_19Apr24.xlsx **Description:**  Please see the "Metadata" sheet tab within this data file for more information on each variable, abbreviations, etc.  **Code/Software** This is a basic spreadsheet file, viewable in Excel or Google Sheets. All subsequent analyses with these data were done in R.
DOI: 10.5281/zenodo.18407519
title: QISHLOQ XO'JALIGI KORXONALARIDA YORDAMCHI VA UMUMISHLAB CHIQARISH XARAJATLARI HISOBI HAMDA ULARNI TAQSIMLASHNING USLUBIY JIHATLARI

description: Ushbu maqolada qishloq xo‘jaligi korxonalarida yordamchi va umumishlab chiqarish xarajatlarining iqtisodiy mohiyati, ularni hisobga olish xususiyatlari va mahsulot tannarxiga olib borish (taqsimlash) usullari tahlil qilingan. Xarajatlarni taqsimlash bazasini to‘g‘ri tanlash orqali tannarxni haqiqiy baholash va rentabellikni oshirish bo‘yicha ilmiy takliflar ishlab chiqilgan.
DOI: 10.5281/zenodo.18407520
title: QISHLOQ XO'JALIGI KORXONALARIDA YORDAMCHI VA UMUMISHLAB CHIQARISH XARAJATLARI HISOBI HAMDA ULARNI TAQSIMLASHNING USLUBIY JIHATLARI

description: Ushbu maqolada qishloq xo‘jaligi korxonalarida yordamchi va umumishlab chiqarish xarajatlarining iqtisodiy mohiyati, ularni hisobga olish xususiyatlari va mahsulot tannarxiga olib borish (taqsimlash) usullari tahlil qilingan. Xarajatlarni taqsimlash bazasini to‘g‘ri tanlash orqali tannarxni haqiqiy baholash va rentabellikni oshirish bo‘yicha ilmiy takliflar ishlab chiqilgan.
DOI: 10.15468/dl.yd4pmu
title: Occurrence Download

description: A dataset containing 283037 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ramphastos ambiguus"
 ]
}

 The dataset includes 283037 records from 188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004197-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dt3tat
title: Occurrence Download

description: A dataset containing 1214 records in GBIF matching the query:
SELECT
 '503' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 51.21395264452012
 AND decimalLatitude &lt;= 56.135291543055025
 AND decimalLongitude &gt;= -71.95510188352445
 AND decimalLongitude &lt;= -60.13294214751847
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 1214 records were derived from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004211-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.71964/124
title: Data Supporting Perfluoroalkyl and Polyfluoroalkyl Substances (PFAS) in Nebraska's Wastewater Treatment Facilities

description: Per- and polyfluoroalkyl substances (PFAS) are a class of compounds defined by their carbon-fluorine bonds, which are incredibly strong. The strength of this bond makes these compounds very useful industrially; they are used as waterproof and grease-proof coatings and as fire retardants. The same thing that makes them useful industrially makes them incredibly recalcitrant in the environment; it is difficult to destroy these compounds. The PFAS are also suspected to cause health impacts in people, such as kidney cancer and low birth weights. Wastewater has been commonly identified as a contributor to the amount of PFAS in the environment, although studies have focused on large treatment facilities and not those that serve small communities. The PFAS's widespread use and recalcitrance in the environment have made them omnipresent, making detection at environmentally relevant levels difficult. The objective of this study was to quantify PFAS in wastewater grab samples from communities serving fewer than 10,000 people in the state of Nebraska and to compare these data to that from larger treatment facilities. 

Wastewater effluent was found to contain between 10.21 and 580 ng/L of total PFAS, while finished biosolids contained 0.66 to 971 ng/g. On a flow rate and per population basis this is equivalent to the per capita load of PFAS generated by large municipal treatment facilities. Our findings indicate that small treatment facilities do have an impact on the widespread distribution of PFAS in the environment.
DOI: 10.5281/zenodo.18407541
title: weecology/PortalData: 6.48.0

description: v6.48.0
DOI: 10.5281/zenodo.18234364
title: Supporting data for "Regional and seasonal variability in decreasing contrail cirrus cloudiness using SAF"

description: Data is based on ECHAM5-CCMod simulations performed at Deutsches Klimarechenzentrum (DKRZ) for the study Regional and seasonal variability in decreasing contrail cirrus cloudiness using SAF. Description of the simulation setup can be found in the publication.

The Archive_Data.zip contains data to reproduce the figures of the publication and contains following files:



Fig1a_AEDT_annual_flightdistance_map.nc (vertically integrated annual flight distance in AEDT flight inventory for the year 2006)

Fig1b_Profiles_regional_annual_flightdistance.nc (vertically resolved annual flight distance in AEDT flight inventory for the year 2006 for the four investigated regions)

Fig2_RE_Nvortex_maps.nc (geographically resolved data of ice crystal number after the vortex loss, i.e. at initialization in ECHAM5-CCMod, and of the radiative effect for the KERO simulation as well as the relative change of the two qunatities between the KERO and SAF simulation)

Fig3_ContrailProperties_supporting_Boxplots.nc (regional and seasonal mean data of the depicted quantities radiative effect, ice crystal number after vortex loss, optical depth, ice crystal number concentration, ice water content, coverage with an optical depth of tau>0.02 and the flight distance forming a contrail)

Fig4_Deltas_of_contrail_properties.nc (averaged differences between the KERO and the SAF simulation for the ice crystal number after the vortex loss, the ice water content, the optical depth, the coverage with an optical depth of tau>0.02 and the resulting abolsute change in the radiative effect on a regional an seasonal scale, extended by the annual mean differences for each region)

Fig5_Deltas_target_use_SAF_season.nc (averaged differences between the KERO and the SAF simulation for the the optical depth, the coverage with an optical depth of tau>0.02 and the change in the radiative effect per kilogram of SAF on a regional an seasonal scale)

Fig6a_Normalized_RadiativeEffect_Nvortex.nc (global and regional annual data for ice crystal number after the vortex loss and the radiative effect for the KERO and the SAF simulation, normalized on the 20 year mean of the KERO simulation)

Fig6b_Biases.nc (regional and seasonal bias of change in radiative effect with respect to a global 20years mean change between the KERO and the SAF simulation)
DOI: 10.5281/zenodo.18234363
title: Supporting data for "Regional and seasonal variability in decreasing contrail cirrus cloudiness using SAF"

description: Data is based on ECHAM5-CCMod simulations performed at Deutsches Klimarechenzentrum (DKRZ) for the study Regional and seasonal variability in decreasing contrail cirrus cloudiness using SAF. Description of the simulation setup can be found in the publication.

The Archive_Data.zip contains data to reproduce the figures of the publication and contains following files:



Fig1a_AEDT_annual_flightdistance_map.nc (vertically integrated annual flight distance in AEDT flight inventory for the year 2006)

Fig1b_Profiles_regional_annual_flightdistance.nc (vertically resolved annual flight distance in AEDT flight inventory for the year 2006 for the four investigated regions)

Fig2_RE_Nvortex_maps.nc (geographically resolved data of ice crystal number after the vortex loss, i.e. at initialization in ECHAM5-CCMod, and of the radiative effect for the KERO simulation as well as the relative change of the two qunatities between the KERO and SAF simulation)

Fig3_ContrailProperties_supporting_Boxplots.nc (regional and seasonal mean data of the depicted quantities radiative effect, ice crystal number after vortex loss, optical depth, ice crystal number concentration, ice water content, coverage with an optical depth of tau>0.02 and the flight distance forming a contrail)

Fig4_Deltas_of_contrail_properties.nc (averaged differences between the KERO and the SAF simulation for the ice crystal number after the vortex loss, the ice water content, the optical depth, the coverage with an optical depth of tau>0.02 and the resulting abolsute change in the radiative effect on a regional an seasonal scale, extended by the annual mean differences for each region)

Fig5_Deltas_target_use_SAF_season.nc (averaged differences between the KERO and the SAF simulation for the the optical depth, the coverage with an optical depth of tau>0.02 and the change in the radiative effect per kilogram of SAF on a regional an seasonal scale)

Fig6a_Normalized_RadiativeEffect_Nvortex.nc (global and regional annual data for ice crystal number after the vortex loss and the radiative effect for the KERO and the SAF simulation, normalized on the 20 year mean of the KERO simulation)

Fig6b_Biases.nc (regional and seasonal bias of change in radiative effect with respect to a global 20years mean change between the KERO and the SAF simulation)
DOI: 10.5281/zenodo.18407536
title: JAXON DAVLATCHILIGI SHAKLLANISH VA RIVOJLANISH TARIXIDA LOTIN TILINING O'RNI

description: Mazkur ilmiy maqolada lotin tilining jaxon davlatchiligi shakllanishi va rivojlanishidagi o‘rni tahlil qilinadi. Qadimgi Rim davlati tajribasi misolida lotin tilining huquqiy, siyosiy va ma’muriy tizimda tutgan mavqei yoritiladi. Shuningdek, o‘rta asrlar va yangi davrda lotin tilining davlat boshqaruvi, diplomatiya, qonunchilik hamda ilm-fan tiliga aylanish jarayoni ko‘rib chiqiladi. Maqolada lotin tilining zamonaviy huquqiy tizimlar va davlatchilik an’analariga ta’siri ilmiy asosda baholanadi.
DOI: 10.5281/zenodo.18407535
title: JAXON DAVLATCHILIGI SHAKLLANISH VA RIVOJLANISH TARIXIDA LOTIN TILINING O'RNI

description: Mazkur ilmiy maqolada lotin tilining jaxon davlatchiligi shakllanishi va rivojlanishidagi o‘rni tahlil qilinadi. Qadimgi Rim davlati tajribasi misolida lotin tilining huquqiy, siyosiy va ma’muriy tizimda tutgan mavqei yoritiladi. Shuningdek, o‘rta asrlar va yangi davrda lotin tilining davlat boshqaruvi, diplomatiya, qonunchilik hamda ilm-fan tiliga aylanish jarayoni ko‘rib chiqiladi. Maqolada lotin tilining zamonaviy huquqiy tizimlar va davlatchilik an’analariga ta’siri ilmiy asosda baholanadi.