cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8971031
title: Gait alteration strategies for knee osteoarthritis: a comparison of joint loading via generic and patient-specific musculoskeletal model scaling techniques

description: Gait modifications and laterally wedged insoles are non-invasive approaches used to treat medial compartment knee osteoarthritis. However, the outcome of these alterations is still a controversial topic. This study investigates how gait alteration techniques may have a unique effect on individual patients; and furthermore, the way we scale our musculoskeletal models to estimate the medial joint contact force may influence knee loading conditions. Five patients with clinical evidence of medial knee osteoarthritis were asked to walk at a normal walking speed over force plates and simultaneously 3D motion was captured during seven conditions (0°-, 5°-, 10°-insoles, shod, toe-in, toe-out, and wide stance). We developed patient-specific musculoskeletal models, using segmentations from magnetic resonance imaging to morph a generic model to patient-specific bone geometries and applied this morphing to estimate muscle insertion sites. Additionally, models were created of these patients using a simple linear scaling method. When examining the patients’ medial compartment contact force (peak and impulse) during stance phase, a ‘one-size-fits-all’ gait alteration aimed to reduce medial knee loading did not exist. Moreover, the different scaling methods lead to differences in medial contact forces; highlighting the importance of further investigation of musculoskeletal modeling methods prior to use in the clinical setting.
DOI: 10.6084/m9.figshare.8971031.v1
title: Gait alteration strategies for knee osteoarthritis: a comparison of joint loading via generic and patient-specific musculoskeletal model scaling techniques

description: Gait modifications and laterally wedged insoles are non-invasive approaches used to treat medial compartment knee osteoarthritis. However, the outcome of these alterations is still a controversial topic. This study investigates how gait alteration techniques may have a unique effect on individual patients; and furthermore, the way we scale our musculoskeletal models to estimate the medial joint contact force may influence knee loading conditions. Five patients with clinical evidence of medial knee osteoarthritis were asked to walk at a normal walking speed over force plates and simultaneously 3D motion was captured during seven conditions (0°-, 5°-, 10°-insoles, shod, toe-in, toe-out, and wide stance). We developed patient-specific musculoskeletal models, using segmentations from magnetic resonance imaging to morph a generic model to patient-specific bone geometries and applied this morphing to estimate muscle insertion sites. Additionally, models were created of these patients using a simple linear scaling method. When examining the patients’ medial compartment contact force (peak and impulse) during stance phase, a ‘one-size-fits-all’ gait alteration aimed to reduce medial knee loading did not exist. Moreover, the different scaling methods lead to differences in medial contact forces; highlighting the importance of further investigation of musculoskeletal modeling methods prior to use in the clinical setting.
DOI: 10.6084/m9.figshare.14054054
title: TB MICROSCOPY DATA-2015.xlsx

description: The dataset is in reference to a study aimed at determining factors associated with prolonged smear positivity in multidrug-resistant tuberculosis (MDR-TB) patients following an appropriate management.
DOI: 10.5281/zenodo.4548303
title: Daily deaths files broken down by sex, age and place of death - FRANCE

description: The dataset contains the number of daily deaths per day in 2019, 2020 and from 1 January to 1 February 2021 at national level (France) broken down place of death.
DOI: 10.5281/zenodo.4548302
title: Daily deaths files broken down by sex, age and place of death - FRANCE

description: The dataset contains the number of daily deaths per day in 2019, 2020 and from 1 January to 1 February 2021 at national level (France) broken down place of death.
DOI: 10.20351/29sg20191107
title: RESNEP-2 Cruise, RV Sarmiento de Gamboa

description: RESNEP-2 Cruise (29SG20191107) carried out on the Research Vessel Sarmiento de Gamboa in 2019
DOI: 10.20351/29sg20190830
title: ALSSOMAR Cruise, RV Sarmiento de Gamboa

description: ALSSOMAR Cruise (29SG20190830) carried out on the Research Vessel Sarmiento de Gamboa in 2019
DOI: 10.15468/g5tweb
title: The last instar larva and pupa of Ora depressa (Coleoptera: Scirtidae), a marsh beetle with underwater pupation

description: This dataset contains the digitized treatments in Plazi based on the original journal article Libonatti, María L., Jorge, Gabrielle, Archangelsky, Miguel, Michat, Mariano C. (2018): The last instar larva and pupa of Ora depressa (Coleoptera: Scirtidae), a marsh beetle with underwater pupation. Acta Entomologica Musei Nationalis Pragae 58 (2): 441-455, DOI: 10.2478/aemnp-2018-0034
DOI: 10.6084/m9.figshare.8221103
title: Data mining the effects of testing conditions and specimen properties on brain biomechanics

description: Traumatic brain injury is highly prevalent in the United States. However, despite its frequency and significance, there is little understanding of how the brain responds during injurious loading. A confounding problem is that because testing conditions vary between assessment methods, brain biomechanics cannot be fully understood. Data mining techniques, which are commonly used to determine patterns in large datasets, were applied to discover how changes in testing conditions affect the mechanical response of the brain. Data at various strain rates were collected from published literature and sorted into datasets based on strain rate and tension vs. compression. Self-organizing maps were used to conduct a sensitivity analysis to rank the testing condition parameters by importance. Fuzzy C-means clustering was applied to determine if there were any patterns in the data. The parameter rankings and clustering for each dataset varied, indicating that the strain rate and type of deformation influence the role of these parameters in the datasets.
DOI: 10.15468/5nkyce
title: Systematics and ecology of Linderiella baetica n. sp. (Crustacea, Branchiopoda, Anostraca, Chirocephalidae), a new species from southern Spain

description: This dataset contains the digitized treatments in Plazi based on the original journal article Alonso, Miguel, Garcia-De-Lomas, Juan (2009): Systematics and ecology of Linderiella baetica n. sp. (Crustacea, Branchiopoda, Anostraca, Chirocephalidae), a new species from southern Spain. Zoosystema 31 (4): 807-827, DOI: 10.5252/z2009n4a4, URL: http://www.bioone.org/doi/abs/10.5252/z2009n4a4
DOI: 10.20351/29my20180115
title: ARIOS Cruise, RV Mytilus

description: ARIOS Cruise (29MY20180115) carried out on the Research Vessel Mytilus in 2018
DOI: 10.6084/m9.figshare.13915880
title: NIAB global and UK subset wheat pedigree files. 11/02/21 update

description: Input files for use with Helium crop pedigree visualisation software (https://github.com/cardinalb/helium-docs/wiki/Download-Helium). This dataset is an updated and edited version of the original pedigree published in PLOS Biology (https://doi.org/10.1371/journal.pbio.3000071).<br>Separate input files are provided for a subset of UK varieties and their ancestors as well as a much larger global pedigree
DOI: 10.6084/m9.figshare.13915880.v2
title: NIAB global and UK subset wheat pedigree files. 11/02/21 update

description: Input files for use with Helium crop pedigree visualisation software (https://github.com/cardinalb/helium-docs/wiki/Download-Helium). This dataset is an updated and edited version of the original pedigree published in PLOS Biology (https://doi.org/10.1371/journal.pbio.3000071).<br>Separate input files are provided for a subset of UK varieties and their ancestors as well as a much larger global pedigree
DOI: 10.6084/m9.figshare.13915880.v1
title: NIAB global and UK subset wheat pedigree files. 11/02/21 update

description: Input files for use with Helium crop pedigree visualisation software (https://github.com/cardinalb/helium-docs/wiki/Download-Helium). This dataset is an updated and edited version of the original pedigree published in PLOS Biology (https://doi.org/10.1371/journal.pbio.3000071).<br>Separate input files are provided for a subset of UK varieties and their ancestors as well as a much larger global pedigree
DOI: 10.25405/data.ncl.12966776
title: Enhancing the Analysis of Disorder in X-Ray Absorption Spectra: Application of Deep Neural Networks to T-jump-X-ray Probe Experiments

description: This is the data associated with the paper: Enhancing the Analysis of Disorder in X-Ray Absorption Spectra: Application of Deep Neural Networks to T-jump-X-ray Probe Experiments. It includes the cartesian coordinates and spectra pairs used for the training of the DNN.
DOI: 10.25405/data.ncl.12966776.v1
title: Enhancing the Analysis of Disorder in X-Ray Absorption Spectra: Application of Deep Neural Networks to T-jump-X-ray Probe Experiments

description: This is the data associated with the paper: Enhancing the Analysis of Disorder in X-Ray Absorption Spectra: Application of Deep Neural Networks to T-jump-X-ray Probe Experiments. It includes the cartesian coordinates and spectra pairs used for the training of the DNN.
DOI: 10.15468/8js7d8
title: Revision of the genera of Polyxenidae bearing pseudoarticulated gnathochilarial sensilla (Diplopoda, Polyxenida, Polyxenidae), with the description of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Duy-Jacquemin, Monique Nguyen (2009): Revision of the genera of Polyxenidae bearing pseudoarticulated gnathochilarial sensilla (Diplopoda, Polyxenida, Polyxenidae), with the description of two new species. Zoosystema 31 (4): 829-848, DOI: 10.5252/z2009n4a5, URL: http://www.bioone.org/doi/abs/10.5252/z2009n4a5
DOI: 10.15129/a3237b0f-5b61-4da0-b78b-526726c136d1
title: Supplementary data for "Discovery of the first potent and selective αvβ5 integrin inhibitor based on an amide-containing core"

description: Supplementary dataset related to the paper: "Discovery of the first potent and selective αvβ5 integrin inhibitor based on an amide-containing core Integrins αvβ5 and αvβ3 are closely related, proangiogenic members of the wider RGD-binding integrin family". Due to their high sequence homology, the development of αvβ5-selective compounds has remained elusive to synthetic and medicinal chemists.
DOI: 10.5282/ubm/data.221
title: Systematics of ‘lithistid’ tetractinellid demosponges from the Tropical Western Atlantic – implications for phylodiversity and bathymetric distribution

description: Background Among all present demosponges, lithistids represent a polyphyletic group with exceptionally well preserved fossils dating back to the Cambrian. Knowledge of their recent diversity, particularly in the Tropical Western Atlantic Ocean (TWA) where they are common in deep waters, is scarce making any comparison between present and past major ‘lithistid’ faunas difficult. In addition, the lack of sufficient molecular and morphological data hamper any predictions on phylogenetic relationships or phylodiversity from this region. The Harbor Branch Oceanographic Institute (HBOI, Fort Pierce, Florida) holds the largest collection of TWA lithistid sponges worldwide, however, the majority remain to be taxonomically identified and revised. Methods/Principal Findings In this study we provide sequences of 249 lithistid demo- sponges using two independent molecular markers (28S rDNA (C1-D2) and cox1 mtDNA). In addition, a morphological documentation of 70 lithistid specimens is provided in the database of the Sponge Barcoding Project (SBP). This integrated dataset represents the largest and most comprehensive of the TWA lithistids to date. The phylogenetic diversity of ‘lithistid’ demosponges in the Bahamas and Jamaica are high in comparison to other TWA regions; Theonellidae and Corallistidae dominate the fauna, while Neopeltidae and Macandrewiidae are rare. A new tetractinellid suborder, one new genus and several new species are recognized and the Pacific ‘lithistid’ genera, Herengeria and Awhiowhio, are reported from the TWA for the first time. The higher-taxa relationships of desma-bearing tetractinellids are discussed and topics for revision suggested. Conclusion This first integrative approach of TWA ‘lithistid’ demosponges contributes to a better understanding of their phylogenetic affinities, diversity and bathymetric distribution pat- terns within the TWA. As in the Pacific, the TWA ‘lithistid’ demosponges dominate deep-water habitats. Deeper taxonomic investigations will undoubtedly contribute to a better comparison between present major ‘lithistid’ faunas and their fossil record in the Mesozoic.
DOI: 10.20351/29my20180201
title: UVIGO Cruise, RV Mytilus

description: UVIGO Cruise (29MY20180201) carried out on the Research Vessel Mytilus in 2018
DOI: 10.17033/data.00000102
title: Towards hydrocitizenship. Connecting communities with and through responses to interdependent, multiple water issues

description: We aim to investigate and develop what we are calling hydrocitizenship:- the extent to which hydrocitizenship is emerging in local areas and how it can be enhanced by arts and humanities centred interdisciplinary research (AHIR) conducted with community groups. Hydrocitizenship implies an awareness of, and responsibility for, water as a vital social and environmental resource at both the individual (citizen) and community level. Being a 'hydrocitizen' means recognizing the complex and interconnected nature of water issues in modern society; that choices and conflicts arise from the differing demands we put on water resources; and that climate change presents added sets of challenges to future water resilience. We seek to move beyond single issue foci of water (e.g. flooding, drought, water supply security, waste disposal security, water related biodiversity, water as amenity and cultural asset) to a more holistic approach which sees these issues as interdependent and operating in catchment and engineered systems which connect communities in numerous way (upstream, downstream, across the rural urban divide, across local and even national legislative boundaries). At the same time as addressing these water-community issues we will ask a series of questions about what (local) communities are (networks/place based); how they are formed/practiced 'internally'; how they are connected to other communities around them, and if, through thinking about environmental (water) based resources communities inevitably share (and are sometimes in conflict over), we can contribute to community and environmental resilience in interconnected ways.
description: Semi-structured interviews
DOI: 10.20351/29my20181004
title: ROAGA Cruise, RV Mytilus

description: ROAGA Cruise (29MY20181004) carried out on the Research Vessel Mytilus in 2018
DOI: 10.15128/r2bv73c042s
title: Magnetic order and ballistic spin transport in a sine-Gordon spin chain [dataset]

description: We report the results of muon-spin spectroscopy (μ+SR) measurements on the staggered molecular spin chain [pym-Cu(NO3)2(H2O)2] (pym = pyrimidine), a material previously described using sine-Gordon field theory. Zero-field μ+SR reveals a long range magnetically ordered ground state below a transition temperature TN=0.23(1) K. Using longitudinal-field (LF) μ+SR we investigate the dynamic response in applied magnetic fields 0<b></b>
DOI: 10.15468/yptwee
title: Eleven new species and a new country record of Pselaphodes (Coleoptera: Staphylinidae: Pselaphinae) from China, with a revised checklist of world species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Huang, Meng-Chi, Li, Li-Zhen, Yin, Zi-Wei (2018): Eleven new species and a new country record of Pselaphodes (Coleoptera: Staphylinidae: Pselaphinae) from China, with a revised checklist of world species. Acta Entomologica Musei Nationalis Pragae 58 (2): 457-478, DOI: 10.2478/aemnp-2018-0035
DOI: 10.15128/r16108vb28d
title: Probing magnetic order and disorder in the one-dimensional molecular spin chains CuF2(pyz) and [Ln(hfac)3(boaDTDA)]n (Ln=Sm, La) using implanted muons [dataset]

description: We present the results of muon-spin relaxation (μSR) measurements on antiferromagnetic and ferromagnetic spin chains. In antiferromagnetic CuF2(pyz) we identify a transition to long range magnetic order taking place at TN=0.6(1) K, allowing us to estimate a ratio with the intrachain exchange of TN/|J|=0.1 and the ratio of interchain to intrachain exchange coupling as |J/J|=0.05. The ferromagnetic chain [Sm(hfac)3(boaDTDA)]n undergoes an ordering transition at Tc=2.8(1) K, seen via a broad freezing of dynamic fluctuations on the muon (microsecond) timescale and implying Tc/|J|=0.6. The ordered radical moment continues to fluctuate on this timescale down to 0.3 K, while the Sm moments remain disordered. In contrast, the radical spins in [La(hfac)3(boaDTDA)]n remain magnetically disordered down to T=0.1 K suggesting Tc/|J|&lt;0.17.
DOI: 10.15468/r2hcw2
title: Taxonomic review of Chin-wen Chen’s species described in the genus Smicromyrme (Hymenoptera: Mutillidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Okayasu, Juriya (2018): Taxonomic review of Chin-wen Chen’s species described in the genus Smicromyrme (Hymenoptera: Mutillidae). Acta Entomologica Musei Nationalis Pragae 58 (2): 479-494, DOI: 10.2478/aemnp-2018-0036
DOI: 10.6084/m9.figshare.14054180.v1
title: Data set: raw training trials for delay maintenance task from Cuttlefish exert self-control in a delay of gratification task

description: The ability to exert self-control varies within and across taxa. Some species can exert self-control for several seconds whereas others, such as large-brained vertebrates, can tolerate delays of up to several minutes. Advanced self-control has been linked to better performance in cognitive tasks and has been hypothesized to evolve in response to specific socio-ecological pressures. These pressures are difficult to uncouple because previously studied species face similar socio-ecological challenges. Here, we investigate self-control and learning performance in cuttlefish, an invertebrate that is thought to have evolved under partially different pressures to previously studied vertebrates. To test self-control, cuttlefish were presented with a delay maintenance task, which measures an individual's ability to forgo immediate gratification and sustain a delay for a better but delayed reward. Cuttlefish maintained delay durations for up to 50–130 s. To test learning performance, we used a reversal-learning task, whereby cuttlefish were required to learn to associate the reward with one of two stimuli and then subsequently learn to associate the reward with the alternative stimulus. Cuttlefish that delayed gratification for longer had better learning performance. Our results demonstrate that cuttlefish can tolerate delays to obtain the food of higher quality comparable to that of some large-brained vertebrates.
DOI: 10.6084/m9.figshare.14054186
title: Data set: raw training trials for reversal learning task from Cuttlefish exert self-control in a delay of gratification task

description: The ability to exert self-control varies within and across taxa. Some species can exert self-control for several seconds whereas others, such as large-brained vertebrates, can tolerate delays of up to several minutes. Advanced self-control has been linked to better performance in cognitive tasks and has been hypothesized to evolve in response to specific socio-ecological pressures. These pressures are difficult to uncouple because previously studied species face similar socio-ecological challenges. Here, we investigate self-control and learning performance in cuttlefish, an invertebrate that is thought to have evolved under partially different pressures to previously studied vertebrates. To test self-control, cuttlefish were presented with a delay maintenance task, which measures an individual's ability to forgo immediate gratification and sustain a delay for a better but delayed reward. Cuttlefish maintained delay durations for up to 50–130 s. To test learning performance, we used a reversal-learning task, whereby cuttlefish were required to learn to associate the reward with one of two stimuli and then subsequently learn to associate the reward with the alternative stimulus. Cuttlefish that delayed gratification for longer had better learning performance. Our results demonstrate that cuttlefish can tolerate delays to obtain the food of higher quality comparable to that of some large-brained vertebrates.
DOI: 10.6084/m9.figshare.14054186.v1
title: Data set: raw training trials for reversal learning task from Cuttlefish exert self-control in a delay of gratification task

description: The ability to exert self-control varies within and across taxa. Some species can exert self-control for several seconds whereas others, such as large-brained vertebrates, can tolerate delays of up to several minutes. Advanced self-control has been linked to better performance in cognitive tasks and has been hypothesized to evolve in response to specific socio-ecological pressures. These pressures are difficult to uncouple because previously studied species face similar socio-ecological challenges. Here, we investigate self-control and learning performance in cuttlefish, an invertebrate that is thought to have evolved under partially different pressures to previously studied vertebrates. To test self-control, cuttlefish were presented with a delay maintenance task, which measures an individual's ability to forgo immediate gratification and sustain a delay for a better but delayed reward. Cuttlefish maintained delay durations for up to 50–130 s. To test learning performance, we used a reversal-learning task, whereby cuttlefish were required to learn to associate the reward with one of two stimuli and then subsequently learn to associate the reward with the alternative stimulus. Cuttlefish that delayed gratification for longer had better learning performance. Our results demonstrate that cuttlefish can tolerate delays to obtain the food of higher quality comparable to that of some large-brained vertebrates.
DOI: 10.15468/mygwke
title: The freshwater and terrestrial turtles from Monte Pila and Fuenmayor (La Rioja, northern Spain): new data on the lower Miocene turtle diversity of the Ebro Basin

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pérez-García, Adán, Suarez-Hernando, Oier, Hernández, Jose M., García, Salvador, Murelaga, Xabier (2021): The freshwater and terrestrial turtles from Monte Pila and Fuenmayor (La Rioja, northern Spain): new data on the lower Miocene turtle diversity of the Ebro Basin. Geodiversitas 43 (3): 75-94, DOI: 10.5252/geodiversitas2021v43a3