cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27483204.v1
title: <b>Dataset- Migration, Factor Mobility and Economic Complexity in African Countries</b>

description: The dataset was used to conduct empirical study exploring how migration and factor mobility influence economic complexity, diversification, and sophistication across low-, lower-middle-, and upper-middle-income African countries
DOI: 10.6084/m9.figshare.27993584.v1
title: Source dataset and code: <b>Comparing impacts of fragmentation on bird functional and phylogenetic diversity in primary and secondary rainforests</b>

description: This is a supplementary dataset to a paper on bird biodiversity metrics of human-modified forests of PNG. It includes both the code and base data to perform core analyses. Abstract1. Avian biodiversity in tropical rainforests is threatened by increasing intensity of anthropogenic disturbances. Secondary forest birds can maintain ecosystem services that are otherwise lost with disappearing primary forests. However, stability of these services can be impeded by area effects reducing bird diversity.2. We compared the effects of fragmentation on avian ecosystem functions in both primary and secondary forests. We performed point count surveys in both continuous rainforests, as well as isolated forest fragments in lowland Papua New Guinea. We combined taxonomic diversity with functional and phylogenetic indices, and patterns of individual functional traits.3. Bird taxonomic diversity was lower in secondary forests, and decreased considerably due to fragmentation. In contrast, functional diversity was not affected by fragmentation, but increased in secondary forests. Phylogenetic diversity increased in all human-modified forests.4. Decreases in taxonomic diversity stemmed from the loss of forest-dependent birds. In contrast, decreases in functional and phylogenetic diversity were prevented by introduction of open-habitat species. This was demonstrated by shifts in trait composition, as bird phenotypes reliant on forest continuity became less prevalent. Specifically, we recorded a proportional decrease in insectivory and ground foraging; and an increase in nectarivory and dispersal ability. Increased dispersal ability was also observed in secondary forests, where it was associated with shifts towards frugivory and canopy foraging. Increases in phylogenetic diversity were likely amplified by high phylogenetic dispersion of introduced habitat generalists. 5. Policy implications. We show that compensatory patterns of species introduction fail to account for loss of ecosystem functions due to the decline of forest-dependent birds. As such, conservation policies should be targeted towards species that share traits associated with disturbance sensitivity, such as insectivory, ground foraging, and low dispersal ability. This could prevent biodiversity loss in poorly explored tropical landscapes in early stages of large-scale deforestation. <br>
DOI: 10.6084/m9.figshare.28702016.v1
title: Results of "Comprehensive Evaluation and Ranking of CMIP6 Global Climate Models for Simulating Climate Extreme Indices Across Diverse Hydrological and Geographical Regions"

description: This repository presents the findings of a study on selecting suitable CMIP6 GCMs for Nepal across different basins and physiographic regions. The selection process is based on extreme climate indices, applying the principles of GDM computed from utility values. The study evaluates and ranks the GCMs to determine the most suitable models for climate analysis in the region.
DOI: 10.17632/33zw4pz2cr
title: raw image data for "Resilient anatomy and local microplasticity of naïve and stress hematopoiesis "_Figure 1-5 part_10

description: raw image data for "Resilient anatomy and local microplasticity of naïve and stress hematopoiesis "_9
DOI: 10.6084/m9.figshare.21294852.v1
title: Additional data for: Infection cycle and phylogeny of a Polinton-like virus with a virophage lifestyle infecting Phaeocystis globosa

description: The code is distributed via https://github.com/BejaLab/Gezelvirus. This repository contains the following items: <br> * phylogeny-Gezel-PLVs - alignments and phylogenetic trees for the chosen set of proteins for Gezel-like PLVs * vcontact2 - results of the vcontact2 analysis * protein-homology-and-function - homology and function for proteins from mesomimiviral, NDDVs, lavidaviruses and other virophages and PLVs based on profile-profile searches. For each protein, the file mcl_genes_60.tsv lists MCL cluster ("Cluster"), cluster identity based on matches to Pfam ("Gene_Pfam", see genes_pfam.tsv for the corresponding manually curated rules), cluster identity based manually curated list of genes ("Gene_Cluster", see genes_cluster.tsv), best hhsearch hit for the particular protein ("Hit.ID", "Hit.Description", "Probab") and the final gene assigment ("Gene"). Functional assignments were checked mainly for proteins from Gezel-like PLVs and lavidaviruses - use with care for other groups. * alphafold-capsid-proteins - alphafold models of the MCP and mCP proteins of Gezel-14T * promoter-motifs - analysis of promoters in mesomimiviruses (meme) and location of PgV-16T-like early promoter motif among PLVs associated with P. globosa (fimo) * phylogeny-with-algae - phylogenetic analyses of the MCP genes from the Gezel-like group and NCLDV-like viruses. The files include alignment of MCPs ≥ 200 residues (*.a2m), trimmed alignment of unqiue long sequences (≥ 300 residues) used for phylogenetic analysis with iqtree2 (*.a2m.trim), iqtree2 output (*.treefile, *.log). In addition, for PLV MCP, short sequences were placed on the iqtree tree by re-evaluation of the iqtree2 trees with raxml-ng (*.raxml.bestTree, *..raxml.bestModel) and epa placement (*_epa). The final trees with metadata are provided in jtree format (*.jtree).
DOI: 10.6084/m9.figshare.24935925.v1
title: Supplementary Material for: Interesting Mucocutaneous Manifestations in COVID-19 Infection or Vaccination Confirmed by Histopathology: A Case Series

description: Mucocutaneous complications or adverse events due to SARS-CoV-2 infection or vaccination have been well-delineated in the literature, respectively. Most eruptions are considered to be mild and self-limiting; however, for the atypical cases which have a tentative clinical diagnosis, performing a biopsy and histopathological assessment is pivotal to confirm the diagnosis and subsequently prescribe a more tailored treatment. Despite the diverse reporting of such incidents globally, the rate of biopsied cases is restricted to less than 15% in most studies. 
 
This case series elucidates 20 patients referred to the tertiary dermatology clinic, including 14 COVID-19 infection-related eruptions such as Lichen Planus (LP), Cutaneous vasculitis, Pityriasis rosea (PR), Discoid lupus erythematosus, Guttate psoriasis, Sarcoidosis, Raynaud's phenomenon, non-specific lesions resembling genital warts, Beau's line and one severe case of purpura fulminans with a promising outcome. Moreover, we presented 6 vaccine-induced cases comprising LP, Urticarial vasculitis, PR, Parapsoriasis, and Localized Morphea. The diagnosis of all cases has been proven by histopathological evaluation. We included pertaining anamnesis details of each patient together with vivid classifying images to pinpoint the morphologic features of each condition.
 
In line with our previous studies, the vaccine-induced eruptions were less severe compared to infection-related complications of COVID-19 and are mostly controllable by antihistamines and corticosteroids administration. Therefore, reporting such events should not hinder COVID-19 vaccination in the general population.
DOI: 10.6084/m9.figshare.28878779.v2
title: Thermal and Energy Simulation Dataset for PV-Enhanced Lightweight Industrial Warehouses in Tecámac, Mexico

description: This dataset supports the study titled <i>"Passive Thermal Enhancement of Composite Metallic Roofs through Rooftop PV Integration: A Calibrated Case Study in Mexico."</i> The research evaluates the dual role of rooftop photovoltaic (PV) systems as renewable energy generators and passive thermal modifiers in three lightweight industrial warehouses located in Tecámac, Mexico.The dataset includes:Hourly electricity consumption profiles generated from synthetic modeling calibrated against 2021 CFE utility billing data.Dynamic simulation results obtained with EnergyPlus v23.2.0 through Ladybug Tools v1.8.0, covering both pre- and post-PV installation scenarios.Annual energy balances, including self-consumption rates, PV coverage rates, net savings, excess production, and deficit energy metrics.Hourly indoor operative temperature profiles before and after PV system integration.This dataset can be used for further research in multiscale energy simulation, passive cooling strategies, PV integration analysis, and thermal resilience assessment for lightweight industrial envelopes under semi-arid climatic conditions.
DOI: 10.6084/m9.figshare.29042216.v1
title: Watts supplementary data.docx

description: Linear measurements of Macropod pedal elements and second moment of area data for metatarsal-IV and V.
DOI: 10.6084/m9.figshare.29127819.v1
title: defineDuff from Noise-enhanced learning in Duffing adaptive oscillator

description: MATLAB code containing the ODEs.
DOI: 10.6084/m9.figshare.11357837.v2
title: Roary (default settings): gene presence and absence of the whole collection

description: Roary: gene presence and absence of the whole collection (n=13,454)
DOI: 10.6084/m9.figshare.29109632.v1
title: Interview Nanny.docx

description: In-depth interview transcription
DOI: 10.17632/97ntvyj9cr
title: Towards inclusive community-based energy exchanges: A multiagent framework

description: This dataset is associated with the article "Towards inclusive community-based energy exchanges: A multiagent framework " by the same authors submitted to the Applied Energy Journal. These data are used to model residential agents' demand, generation, and storage, according to the equations presented in the paper. Pricing data used by the residential agents and the community manager agent is also provided. Please see the publication for more information about the dataset.
DOI: 10.6084/m9.figshare.11828253.v1
title: Source_Data.rar

description: Fig. 5 b and d in the manuscript "Nature of Power Electronics and Deep Integration of Power Conversion with Communication for Talkative Power". In Fig. 5b, the Bode plots of LC LPF with load R, at switching frequencies 100kHz and 83.3kHz are given; the amplitude is attenuated and the phase shifts about 180°. In Fig. 5d, efficiency curves based on different load are given. The blue curve is the normal operation condition and the red curve is the data modulation integrated condition.
DOI: 10.6084/m9.figshare.22335245.v1
title: Checking the balance between pathogenic and mutualistic pine needle fungi of the genus <i>Lophodermium</i> in forested and urban areas of Slovakia

description: <i>Lophodermium</i> species are well known to be among the dominant endophytic fungi colonizing pine needles. The occurrence of two species with different life strategies on different <i>Pinus</i> trees across Slovakia was detected by PCR using species-specific primers. In general, the commensalistic species <i>L. pinastri</i> was more frequent than parasitic <i>L. seditiosum</i>. There were no significant differences observed between urban and natural environments, but natural environments have more frequent colonization by <i>L. pinastri</i> and less frequent were trees negatively tested to <i>Lophodermium</i> colonization. Among the most frequently sampled trees were non-native <i>P. nigra</i> and native <i>P. sylvestris</i>. A significant difference in <i>Lophodermium</i> incidence was detected between these two species in a natural environment, with increased frequency of <i>L. pinastri</i> on native Scots pine. In addition to one clade of <i>L. pinastri</i>, culture based species identification confirmed the presence of <i>L. corconticum</i> and an undescribed clade of <i>L. seditiosum</i> that is not sensitive to used PCR primers for the species detection.
DOI: 10.6084/m9.figshare.25601610.v1
title: Raw and processed data of three scRNA-seq datasets.

description: The three scRNA-seq datasets used in the updated scNODE paper (https://www.biorxiv.org/content/10.1101/2023.11.22.568346v2).
DOI: 10.6084/m9.figshare.29041523.v1
title: Summary data for palmar study

description: This is the summary data for the study entitled "Microneedle-assisted iontophoretic transdermal administration of adrenergic antagonists does not modulate palmar sweating induced by static exercise in healthy young adults".
DOI: 10.17632/yzxtxn4nmd
title: RNA Sequencing-Based Single Sample Predictors of Molecular Subtype and Risk of Recurrence for Clinical Assessment of Early-Stage Breast Cancer

description: Gene expression data and associated supplementary files from RNAseq of breast cancer samples from Staaf et al. npj Breast Cancer 2022 (source reference below). Library preparation for mRNA-sequencing was done by a stranded dUTP mRNA protocol or by Illumina stranded TruSeq mRNA protocol. Expression data (Fragments Per Kilobase per Million reads, FPKM) was generated by an analysis pipeline utilizing Hisat/StringTie with GRCh38 human genome primary assembly and GENCODE Release 27 transcripts/genes. Gene expression data is summarized on GENCODE gene identifier. Gene and transcript definitions and gene annotations are from GENCODE Release 27.

Detailed description including material and methods for RNAseq, Hisat/StringTie analysis pipeline, and the development of the Single Sample Predictor (SSP) models for Breast Cancer is available in Staaf et al. npj Breast Cancer 2022 (source reference below).

The developed SSP models are available as an R package available at GitHub (reference below).
DOI: 10.25402/fmc.24433564.v1
title: New horizons in lung cancer management through ATR/CHK1 pathway modulation

description: suppl data
DOI: 10.6084/m9.figshare.12472646.v1
title: Dust, SST, and Productivity Data for ODP 1208A and ODP 885/886

description: These Excel files contain all of the elemental, isotopic, export productivity, and SST data for ODP sites 1208 and 885/886 associated with Abell et al., "Poleward and weakened westerlies during Pliocene warmth".
DOI: 10.6084/m9.figshare.28641851.v1
title: Honey bee (<i>Apis mellifera</i>) abundance, weather condition, parasitism rate by <i>Apocephalus borealis </i>and honey bee weight in San Francisco

description: This study investigated honey bee abundance and <i>A. borealis</i> parasitism rates in an urban environment in San Francisco, California.
DOI: 10.6084/m9.figshare.21803370.v1
title: Manually restored damaged film scans

description: Manually restored scans of 35mm film of a variety of colour emulsions, including slides and negatives. The restored damage includes dust, scratches, hairs, and specks, and the original damaged scans can be found in "Authentically damaged film scans"<br> <br> <br> All 44 scans contributed and manually restored by by d@analog.cafe.
DOI: 10.6084/m9.figshare.28899128.v1
title: Source data for Were et al. 2025 Plant Cell

description: Source data for Were et al. (2025) Plant Cell that includes raw data, phylogenetic trees, and scripts used for data analysis and figure preparation for Figure 2B, Figure S7D, and Figure S8A.
DOI: 10.6084/m9.figshare.3565029.v1
title: Appendix B. A table of the sampled species.

description: A table of the sampled species.
DOI: 10.6084/m9.figshare.5181535.v1
title: "Evolution of Language" paper complimentary material

description: "Evolution of Language" paper complimentary material
DOI: 10.6084/m9.figshare.6984797.v1
title: Data from: The effects of agroforestry systems on bird diversity: A global synthesis.

description: Original data from: Bohada-Murillo, M., G.J. Castaño Villa and F.E. Fontúrbel (2019) The effects of agroforestry systems on bird diversity: A global synthesis. Land Degradation & Development. doi: 10.1002/ldr.3478<br><br>This entry contains three files:<br><br>(1) richness_data.csv - a CSV file containing the original data from species richness case studies included in the meta-analysis.<br>(2) abundance_data.csv - a CSV file containing the original data from bird abundance case studies included in the meta-analysis.<br>(3) references.txt - a numbered list (corresponding to the ref number in the richness and abundance data files) of the original data sources used.
DOI: 10.17608/k6.auckland.6267422.v3
title: Mapping a geographic map and a population cartogram side by side using R

description: This code creates a geographic map and a corresponding population cartogram side by side. They have the same colour coding to facilitate comparison. Users can modify this code to map their own data. <br>
DOI: 10.17632/t69xj8pzrp
title: Data for: A new compsognathid theropod dinosaur from the oldest assemblage of the Jehol Biota in the Lower Cretaceous Huajiying Formation, northeastern China
DOI: 10.6084/m9.figshare.21814626.v1
title: İstanbul BB Günlük Vefat Sayıları 2015-2023

description: Death statistics from Istanbul 2015-2023. Can be used to estimate excess deaths in Istanbul (and possibly Turkey). <br> Continually updated at: https://sarkac.org/2023/01/istanbulda-haftalik-vefat-sayilari/
DOI: 10.6084/m9.figshare.28236284.v1
title: Gene Misannotation Databases

description: MMseqs formatted databases for gene misannotation paper
DOI: 10.6084/m9.figshare.28424708.v2
title: Comments

description: Populist Connective Memories: YouTube User's Reactions to the Coverage of the January Insurrections in Brazil and the United States
DOI: 10.6084/m9.figshare.28752050.v2
title: <b>Genome collection of gut microbial communities from wild rodents</b>

description: A total of 17,137 genomes were recovered from wild rodent gut metagenomes and a corresponding culture collection.
DOI: 10.17632/9hywbzt8zd
title: Data for: Structural Dynamics, Phonon Spectra and Thermal Transport in the Silicon Clathrates

description: This repository provides additional data to accompany the paper:

"Structural Dynamics, Phonon Spectra and Thermal Transport in the Silicon Clathrates"

B. Wei, J. M. Flircroft and J. M. Skelton
Molecules 27 (19), 6431 (2022), DOI: 10.3390/molecules27196431

This article examines the structural dynamics, phonon spectra and thermal transport of bulk diamond Si and five Si clathrate framework structures. This repository makes available a full set of data from these calculations, including:

* Optimised structures;
* Phonon calculations;
* Simulated infrared (IR) and Raman spectra; and
* Thermal conductivity calculations performed within the single-mode relaxation-time approximation.

The repository also contains sample input files for the Vienna Ab initio Simulation Package (VASP) code.

For details of how this data was generated, users are referred to the published article and supporting information. Brief details of file formats and links to further documentation are given in the included README file.
DOI: 10.6084/m9.figshare.14776380.v1
title: OnClass_data_public_scRNA_data.tar.gz.1

description: Dataset for OnClass
DOI: 10.6084/m9.figshare.21751436.v2
title: Tuberculosis in prisons. Importance of considering the clustering in the analysis in cross-sectional studies

description: This is the supplementary material that includes: 1) Systematic search in PubMed to identify those publications whose main objective was to estimate the prevalence of TB and the risk factors associated with TB. 2) The two datasets used to show the impact of adjustment versus failure to adjust by the cluster structure and make researchers aware of diseases in prisons, especially infections such as tuberculosis. We compare log-binomial and Poisson regression models, Generalized Estimating Equations, and mixed-effects regression models. We illustrate our methodology with two studies of tuberculosis in prisons
DOI: 10.17632/7zbk8zsd8y
title: Requirements data sets (user stories)

description: A collection of 22 data set of 50+ requirements each, expressed as user stories. 

The dataset has been created by gathering data from web sources and we are not aware of license agreements or intellectual property rights on the requirements / user stories. The curator took utmost diligence in minimizing the risks of copyright infringement by using non-recent data that is less likely to be critical, by sampling a subset of the original requirements collection, and by qualitatively analyzing the requirements. In case of copyright infringement, please contact the dataset curator (Fabiano Dalpiaz, f.dalpiaz@uu.nl) to discuss the possibility of removal of that dataset

The data sets have been originally used to conduct experiments about ambiguity detection with the REVV-Light tool: https://github.com/RELabUU/revv-light

This is the original record. However, a version with detailed information about each of the datasets can be found in Zenodo: https://zenodo.org/records/13880060
DOI: 10.17632/vwbb4dc9b7
title: Sick and Healthy: Thermal Images of Broiler Avian 48

description: dataset consisting of thermal images of 600 Cobb Avian 48 birds, including both males and females of varying ages. The research was conducted at the research farm of the Department of Poultry Production, Faculty of Agriculture, Kafrelsheikh University, Egypt. The dataset comprises distinct views captured at different times, such as frontal, flat, side, single, and group perspectives. Data collection employed a UNI-T UTi165A thermal imaging camera with the following specifications: a temperature range of -10 °C to 400 °C, a measurement resolution of 0.1°C, an accuracy of ±2.0 °C or ±2%, and an IR resolution of 19,200 pixels (160 × 120).