cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8cz8w9gpv
title: Atlas of impact-induced, in vivo human brain kinematics

description: Accelerations cause brain tissue to move, and this data summarizes
 MRI-based observations of 3D brain movement during an in vivo impact
 (brain-skull displacement and brain tissue deformation). The data is a
 group average, or atlas, of indivudial data from two groups of study
 participants: neck extension (n=10) and neck rotation (n=9).
description: Brain tissue motion data was extracted from MRI sequences
 acquired while the heads of study participatns were subjected to a mild
 acceleration inside the MRI scanner.  The resulting resulting images were
 processed using a tissue tracking algorithm. The output of the algorithm
 consisted of skull-brain displacements and strains in each of the
 participants. This data consists of a group average across the individuals
 i.e., a representative movement pattern of displacement and strain, as
 well as its varability.
description: READ ME Atlas (a group average) of brain
 motion data acquired via MRI during a mild acceleration of human heads.
 Two folders are given: one for an impact during neck rotation and one
 impact during neck extension. The data is in ascii format that can be read
 by humans or machines. The software that may be used for visualization
 appears below. Each vtk file contains the following fields defined in a
 mesh with nodal and cell data: 1) Mesh locations (float
 3d vector stored as 'unstructured_grid')<br> 2) Mesh
 connectivity (integer scalar 4d connectivity vector
 'cells')<br> 3) Atlas MRI T1-weighted magnitude (scalar
 stored at the nodes 'T1')<br> 3) Group variability in MRI
 T1-weighted magnitude (scalar stored at the nodes
 'T1_std')<br> 4) Atlas Displacement (3d vector time
 sequence stored at the nodes 'disp')<br> 5) Group
 variability in Displacement (3d vector time sequence stored at the nodes
 'disp_std')<br> 6) Atlas Strain tensor (6d vector time
 sequence stored at the cells 'E1')<br> 7) Max shear strain
 from atlas strain tensor (scalar time sequence stored at the cells
 'GmaxT2')<br> 8) Variability in Max shear strain (scalar
 time sequence stored at the cells 'GmaxT2_std')<br> 9)
 Group average of individual max shear strains (scalar time sequence stored
 at the cells 'GmaxT3')<br> 10) Variability Group average
 of individual max shear strains (scalar time sequence stored at the cells
 'GmaxT3_std') <br> A description of the
 vtk format appears here:<br>
 https://vtk.org/wp-content/uploads/2015/04/file-formats.pdf
 Descriptions of visualization software appear here:<br>
 https://en.wikipedia.org/wiki/ParaView<br>
 https://en.wikipedia.org/wiki/VisIt
DOI: 10.48689/fg1c-b058
title: Water System (Gibsons)
DOI: 10.48689/9y8r-8s66
title:  Water Sampling Locations (White Rock)
DOI: 10.5061/dryad.47d7wm3cr
title: Root responses to neighbors depend on neighbor identity and resource distribution

description: In a complex soil environment, competitive and environmental factors will
 interact with individual traits to influence a plant’s root growth
 patterns and ability to compete for resources. Here, we examine how root
 growth of a focal plant, Plantago lanceolata L., responds to resource
 heterogeneity and to presence of two neighbor species, Centaurea jacea
 L.and Poa pratensis L. A full factorial experiment tested the effects of
 nutrient heterogeneity, neighbors, and their interaction on root responses
 of Plantago. Roots in shared quadrants of a pot were harvested and
 quantified by qPCR for plants grown alone or with a neighbor, in patchy or
 even soil. The effects of experimental treatments on Plantago root mass
 distribution were tested with two-way ANOVA. When soil resources were
 evenly distributed, Plantago individuals increased root allocation to soil
 shared with a Centaurea neighbor but not a Poa neighbor. When soil
 resources were patchy, Plantago responded more strongly to Poa than to
 Centuarea, and placed more roots in the high-resource patch. These results
 demonstrate that plants can respond differently to neighbors depending on
 species and that integrating multiple cues results in non-additive effects
 on root behavior.
description: The experimental design is described in the publication. Shoot
 mass was harvested, dried, and weighed in mg. Root mass was harvested from
 two shared quadrants of each pot and wet weight in mg recorded. For pots
 with neighbors, qPCR was used to estimate the percentage of root mass
 belonging to each plant.
description: Biomass measurements are in milligrams. Root masses are for two
 shared quadrants (q1 and q3) of each pot. When the soil environment is
 patchy, q1 contains high resources and q3 contains low
 resources.
DOI: 10.48689/bgmk-hx39
title: Water Rights Licences - Public
DOI: 10.48689/p30d-ne86
title: Water Rights Applications - Public
DOI: 10.48689/nmpw-2980
title: Water Resource Management Streams
DOI: 10.5061/dryad.bcc2fqzbz
title: Online Supplementary Data: Deep-time biodiversity patterns and the dinosaurian fossil record of the Late Cretaceous Western Interior, USA

description: In order for palaeontological data to be informative to ecologists seeking
 to understand the causes of today’s diversity patterns, palaeontologists
 must demonstrate that actual biodiversity patterns are preserved in our
 reconstructions of past ecosystems. During the Late Cretaceous, North
 America was divided into two landmasses, Laramidia and Appalachia.
 Previous work has suggested strong faunal provinciality on Laramidia at
 this time, but these arguments are almost entirely qualitative. We
 quantitatively investigated faunal provinciality in ceratopsid and
 hadrosaurid dinosaurs using a biogeographic network approach and
 investigated sampling biases by examining correlations between dinosaur
 occurrences and collections. We carried out a model-fitting approach using
 generalized least-squares regression to investigate the sources of
 sampling bias we identified. We find that while the raw data strongly
 support faunal provinciality, this result is driven by sampling bias. The
 data quality of ceratopsids and hadrosaurids is currently too poor to
 enable fair tests of provincialism, even in this intensively sampled
 region, which probably represents the best-known Late Cretaceous
 terrestrial ecosystem on Earth. To accurately reconstruct biodiversity
 patterns in deep time, future work should focus on smaller scale, higher
 resolution case studies in which the effects of sampling bias can be
 better controlled.
DOI: 10.48689/8c9w-ev81
title: Water Reserves and Water Allocation Restrictions
DOI: 10.48689/3r4e-ny85
title: Water Quality Sampling (Gibsons)
DOI: 10.6086/d1kq3q
title: Data from: Petals and leaves: quantifying the use of nest building materials by the world’s most valuable solitary bee

description: The alfalfa leafcutter bee (“ALCB”, Megachile rotundata) is a solitary,
 cavity-nesting bee native to Eurasia, managed as an agricultural
 pollinator of alfalfa and several other crops in North America since the
 1940s (Pitts-Singer and Cane 2011). The most intensively managed and
 economically valuable solitary bee worldwide, it serves as a model
 organism for studying solitary bee biology (Pitts-Singer and Cane 2011).
 Understanding this species’ nesting behavior is critical to its
 propagation for commercial pollination services. As its common name
 suggests, female ALCBs construct their nests in above-ground holes using
 carefully clipped pieces of leaves (Pitts-Singer and Cane 2011).
description: At University of California, Riverside (33.965 °N, 117.341 °W),
 we erected 16 mesh field cages (5.8 m<sup>3</sup>), each of
 which contained a fixed ratio of five plant species in 2-L pots (Appendix
 S1: Table S1), totaling 30 pots per cage: alfalfa (<i>Medicago
 sativa</i>) and the California-native ornamentals <i>Baileya
 multiradiata </i>(desert marigold; Fig. 1A), <i>Sphaeralcea
 ambigua</i> (desert mallow; Fig. 1B), <i>Erigeron glaucus
 </i>(seaside daisy), and <i>Phacelia tanacetifolia
 </i>(tansy phacelia). Foraging ALCBs visited all five plant species
 for pollen and/or nectar. In each cage, we supplied a nesting block (Fig.
 1C; face 23 cm x 15 cm; height: 1 m) filled with 60 paper straws (diameter
 5 mm, length 12.7 cm), facing southeast. In mid-June 2019 and 2020, we
 introduced 20 female and 50 male ALCBs<i> </i>to each cage.
 After six weeks, all straws were collected, stored at 5 °C, then dissected
 the following spring. We recorded all cells constructed in each nest
 (straw), the contents of each cell (presence of brood), and the
 material(s) used to construct each cell. Leaves and petals from all five
 plant species were identifiable by color and trichome
 morphology.
description: Descriptions of variables are provided in the first tab
 (metadata) of the Excel file. Each row in the dataset represents a single
 cell in a nest/straw constructed by a nesting female alfalfa leafcutter
 bee (<em>Megachile rotundata</em>). <em>N</em> =
 170 cells.
DOI: 10.48689/cmzt-4186
title: Water Quality Objectives Reports - Index
DOI: 10.25338/b88p8w
title: Behavioural correlations across multiple stages of the antipredator response: do animals that escape sooner hide longer?

description: A fundamental assumption in predator–prey ecology is that prey responses
 comprise two main stages: escape when attack occurs or appears imminent
 and avoid the threat by seeking refuge until it has passed. While numerous
 studies have examined either initial prey responses to an approaching
 predator (flight initiation distance, FID), or subsequent hiding behaviour
 (e.g. latency to resume activity), to our knowledge, no previous studies
 have repeatedly tested multiple individuals in nature to quantify whether
 initial escape tendencies, behaviour during the escape and latency to
 resume activity are repeatable, and whether these stages of the
 antipredator response are correlated. The goal of this study was to
 explore how consistent spatial differences in rates of human activity
 shape risk-sensitive behaviour throughout multiple steps of the
 antipredator response (to humans) in California ground squirrels,
 Otospermophilus beecheyi, tested in various group sizes and environmental
 contexts across time. Our study provides the first example showing that,
 as predicted: FIDs, latencies to resume activity and other post-FID
 aspects of prey responses were repeatable and positively correlated at the
 among-individual level. This correlation is ecologically important in that
 it provides an underlying mechanism for a trade-off involving not only the
 cost versus benefit of early versus late escape, or early versus late
 emergence from refuge, but for a trade-off based on variation in
 fearfulness expressed across stages. Furthermore, we found that human
 activity influenced some, but not all, stages of the antipredator
 response.
DOI: 10.48689/0gpf-8r56
title: Water Pressure Zones (Squamish)
DOI: 10.6078/d1kq62
title: GEOS-Chem nested simulation over the Kīlauea volcanic plume

description: This dataset contains the GEOS-Chem chemical transport model (version
 12.8.2) simulation that guides the interpretation of the
 abundance and source and sink processes affecting sulfur
 dioxide and sulfate aerosols from the volcanic plume regime
 during May-September 2008 in Li and Cohen (2021) and can be
 analyzed using codes
 at https://github.com/ChiLi90/LifetimeFit/tree/master.
DOI: 10.48689/vzs3-1567
title: Water Management Reserves
DOI: 10.48689/7dte-w428
title: Water Lines (Squamish)
DOI: 10.48689/ew9w-wp52
title: Water Licensed Works - Points
DOI: 10.5061/dryad.jwstqjq8b
title: Genome of the butterfly hillstream loach provides insights into adaptations to torrential mountain stream life

description: Butterfly hillstream loach (Beaufortia kweichowensis), a benthic fish in
 torrential mountain streams, possesses a totally flat ventrum, flattened
 craniofacial and body skeletons, and enlarged paired fins covered by
 substantially small keratinous structures. However, little is known about
 the genetic basis of these specialized morphological adaptations. Here we
 present a 448.52 Mb genome assembly with contig N50 length of 5.53 Mb by
 integrating Illumina short-read sequencing, Nanopore long-read sequencing
 and HiC-based chromatin map. Demographic history reconstruction of the
 butterfly hillstream loach reveals that the population dynamics is
 correlated with the different stages of uplifting of the Tibetan Plateau.
 Comparative genomic analysis finds evidence of 6 keratin genes in
 butterfly hillstream loach evolving under positive selection. Within these
 genes, 2 keratin genes exhibit species-specific and divergent amino acid
 changes, suggesting a role in the formation of the unculi. Additionally, a
 series of positively selected genes, rapid evolving genes, specific
 variant genes and expanded gene families are found, including genes
 related to Hedgehog, Notch, and BMP pathways, which may be involved in
 craniofacial development. These findings may have important implications
 for understanding the genetic basis of phenotypic adaptation to torrential
 mountain stream life.
description: In the present study, a chromosome-level reference genome for the
 butterfly hillstream loach was generated using a hybrid strategy of
 Illumina short-read sequencing, long-read Oxford Nanopore sequencing and
 HiC-based chromatin map.
DOI: 10.48689/tg72-bq59
title: Water Licensed Works - Lines
DOI: 10.48689/2jkp-qq15
title: Water Level and Flow
DOI: 10.48689/yze3-y311
title: Water Facility (Squamish)
DOI: 10.48689/htzg-cj33
title: Water Allocation Restrictions View
DOI: 10.5061/dryad.b8gtht7c6
title: A synthetic RNA editing factor edits its target site in chloroplasts and bacteria

description: Members of the pentatricopeptide repeat (PPR) protein family act as
 specificity factors in C-to-U RNA editing. The expansion of the PPR
 superfamily in plants provides the sequence variation required for design
 of consensus-based RNA-binding proteins. We used this approach to design a
 synthetic RNA editing factor to target one of the sites in
 the Arabidopsis chloroplast transcriptome recognised by
 the natural editing factor CHLOROPLAST BIOGENESIS 19 (CLB19). We show that
 our synthetic editing factor specifically recognises the target sequence
 in in vitro binding assays. The designed factor is equally specific for
 the target rpoA site when expressed in chloroplasts and
 in the bacterium E. coli. This study serves as a successful pilot
 into the design and application of programmable RNA editing factors based
 on plant PPR
 proteins.                                               
description: The dataset includes source data files for Figure 2,
 Supplementary Figure S2, Supplementary Figure S4 and Supplementary Figure
 S5 from the article in Communications Biology.<br> <br> For
 Figure 2, four .tif files are provided which contain the results of
 electrophoretic mobility shift analysis using a fluorophore-labelled RNA
 probe. Details are provided in the article. The fluorescence signal was
 imaged with an Amersham Typhoon system (GE Healthcare), with an excitation
 wavelength of 488 nm and an emission wavelength of 520 nm.
 For Supplementary Figure S2, six .tif files are provided
 containing uncropped images corresponding to the protein gels shown
 in Supplementary Figure S2 panels <strong>c</strong>
 and <strong>d</strong>. For
 Supplementary Figure S4, tab-separated text files are provided containing
 count values generated with Salmon (the RNA-seq mapping methodology is
 explained in the article). Each row in each file is an extract from a
 Salmon quants file. Columns are as follows: sample_file:gene_id, length,
 effective length, transcripts per million (TPM), normalised counts.
 'FigS4.ipynb' is a Jupyter notebook containing Python code used
 to produce Supplementary Figure S4 from this data. For
 Supplementary Figure S5, 'ycf3_splicing.xls' contains read
 counts for RNA-seq reads crossing the donor, acceptor and splice junctions
 of the <em>ycf3</em> transcript (intron
 2). 'FigS5.ipynb' is a Jupyter notebook containing Python code
 used to produce Supplementary Figure S5 from this data.
DOI: 10.48689/gqf1-t842
title: Washington State Toxic Algae - Freshwater Algae Bloom Monitoring Program
DOI: 10.5061/dryad.qrfj6q5fb
title: Experimental seed sowing reveals seedling recruitment vulnerability to unseasonal fire

description: Unseasonal fire occurrence is increasing globally, driven by climate
 change and other human activity. Changed timing of fire can inhibit
 post-fire seedling recruitment through interactions with plant phenology
 (the timing of key processes, e.g., flower initiation, seed production,
 dispersal, germination), and therefore threaten the persistence of many
 plant species. While empirical evidence from winter-rainfall ecosystems
 shows that optimal seedling recruitment is expected following summer and
 autumn (dry season) fires, we sought experimental evidence isolating the
 mechanisms of poor recruitment following unseasonal (wet season) fire. We
 implemented a seed sowing experiment using nine species native to
 fire-prone, Mediterranean-climate woodlands in southwestern Australia to
 emulate the timing of post-fire recruitment and test key mechanisms of
 fire seasonality effects. For seeds sown during months when fire is
 unseasonal (i.e. August-September: end of the wet winter season), seedling
 recruitment was reduced by up to 99% relative to seeds sown during
 seasonal fire months (i.e. May-June: end of the dry summer season) due to
 varying seed persistence, seedling emergence and seedling survival. We
 found that up to 70 times more seedlings emerged when seeds were sown
 during seasonal fire months compared to when seeds were sown during
 unseasonal fire months. The few seedlings that emerged from unseasonal
 sowings all died with the onset of the dry season. Of the seeds that
 failed to germinate from unseasonal sowings, only 2% survived exposure on
 the soil surface over the ensuing hot and dry summer. Our experimental
 results demonstrate the potential for unseasonal fire to inhibit seedling
 recruitment via impacts on pre-germination seed persistence and seedling
 establishment. As ongoing climate change lengthens fire seasons (i.e.,
 unseasonal wildfires become more common) and managed fires are implemented
 further outside historically-typical fire seasons, post-fire seedling
 recruitment may become more vulnerable to failure, causing shifts in plant
 community composition towards those with fewer species solely dependent on
 seeds for regeneration.
description: <strong>Seedling emergence and survival
 data</strong><br>
 [seedling_emeregence_survival_EcolApps.xlsx]<br> This data file
 contains the raw data used in the analysis of seedling emergence and
 survival relative to the timing of seed sowing throughout the
 year. <strong>Exposed seed persistence
 data</strong><br> [seed_persistence_EcolApps.xlsx]<br>
 This data file contains the raw data used in the analysis of seed survival
 relative to the number of months that seeds were exposed on the soil
 surface over summer.
DOI: 10.48689/fyew-q256
title:  Washington State Aquatic Plant Survey (1991 ongoing)
DOI: 10.48689/dcd0-s784
title:  WHOI: Ship Data-Grabber System
DOI: 10.5061/dryad.p8cz8w9q4
title: Can an introduced predator select for adaptive sex allocation?

description: Most species produce equal numbers of sons and daughters, and sex
 differences in survival after parental care do not usually affect this
 pattern. Temporary overproduction of the scarcer sex can be adaptive when
 generations overlap, the sexes differ in life history expectations, and
 parents can anticipate future mating opportunities. However an alternative
 strategy of maximising the competitiveness of the more abundant sex in
 these circumstances remains unexplored. We develop theory showing how
 mothers can maximise reproductive value when future mate competition will
 be high by producing more sons in the advantageous early hatching
 positions within their broods. Our model for optimal birth order was
 supported by long term data of offspring sex in a parrot facing
 catastrophic female mortality caused by introduced predators. Swift
 parrots (Lathamus discolor) suffer high female mortality due to introduced
 sugar gliders (Petaurus breviceps) creating fluctuating male biased adult
 sex ratios. Offspring hatched early within broods fledged in better
 condition, and in support of our model were more likely to be male in
 years with higher adult female mortality. We found a highly significant
 rank-order correlation between observed and predicted birth sex ratios.
 Our study shows the potential for mothers to maximise reproductive value
 via strategic biases in offspring sex depending on the advantages
 conferred by birth order and the predictability of future mate
 competition. Our long term data support the predictions and appear to
 suggest that sex allocation strategies may evolve surprisingly quickly
 when anthropogenic pressures on populations are severe.
description: A ReadMe file with descriptio of data sets and MATLAB program
 files is included.
DOI: 10.48689/cstn-6347
title:  Volcanoes
DOI: 10.48689/daba-jw68
title: Visual Landscape Inventory
DOI: 10.5061/dryad.1g1jwstvz
title: Effects of Uniform Vertical Inflow Perturbations on the Performance of Flapping Wings

description: Flapping wings have attracted significant interest for use in miniature
 unmanned flying vehicles. Although numerous studies have investigated the
 performance of flapping wings under quiescent conditions, effects
 of  freestream disturbances on their performance remain
 under-explored. In this study, we experimentally investigated the effects
 of uniform vertical inflows on flapping wings using a Reynolds-scaled
 apparatus operating in water at the typical Reynolds number of large
 insects (Re ≈ 3600). The overall lift and drag produced by flapping wings
 were measured by varying the magnitude of inflow perturbation from
 JVert =-1 (downward inflow)
 to JVert =1 (upward inflow),
 where JVert  is the ratio of the inflow
 velocity to the wing’s velocity. The interaction between flapping wings
 and downward oriented inflows resulted in a steady linear reduction in
 mean lift and drag coefficients with increasing inflow magnitude.
 While a steady linear increase was noted for upwards oriented
 inflows until JVert= 0.3 and after JVert = 0.7,
 a significant unsteady wing-wake interaction occurred when 0.3
 ≤ JVert&lt; 0.7, which caused large variations in
 instantaneous forces over the wing and led to a reduction in mean
 performance. These findings highlight asymmetrical effects of vertically
 oriented perturbations on the performance of flapping wings and pave the
 way for development of suitable control strategies.
description: Data files were organized
 in three different folders including PIV results, processed data, and raw
 data. Each folder has a README file which describes the available data and
 codes in the folder. Requirements: WinRAR, MATLAB
 2018b, Microsoft Excel.
DOI: 10.48689/z6mx-sa45
title:  Vessel Traffic Routes
DOI: 10.48689/6fa8-9d48
title: Vessel Traffic 2010