cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id306437.2
title: StrainInfo SI-ID 306437.2

description: StrainInfo dataset 306437 about a strain of Trichophaea abundans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306438.2
title: StrainInfo SI-ID 306438.2

description: StrainInfo dataset 306438 about a strain of Chlorociboria aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306439.2
title: StrainInfo SI-ID 306439.2

description: StrainInfo dataset 306439 about a strain of Ascocoryne sarcoides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306440.2
title: StrainInfo SI-ID 306440.2

description: StrainInfo dataset 306440 about a strain of Bjerkandera adusta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306441.2
title: StrainInfo SI-ID 306441.2

description: StrainInfo dataset 306441 about a strain of Bjerkandera adusta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306442.2
title: StrainInfo SI-ID 306442.2

description: StrainInfo dataset 306442 about a strain of Chondrostereum purpureum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306443.2
title: StrainInfo SI-ID 306443.2

description: StrainInfo dataset 306443 about a strain of Fomes fomentarius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306444.2
title: StrainInfo SI-ID 306444.2

description: StrainInfo dataset 306444 about a strain of Fomes fomentarius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306445.2
title: StrainInfo SI-ID 306445.2

description: StrainInfo dataset 306445 about a strain of Fomitopsis pinicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306446.2
title: StrainInfo SI-ID 306446.2

description: StrainInfo dataset 306446 about a strain of a not identified species. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306447.2
title: StrainInfo SI-ID 306447.2

description: StrainInfo dataset 306447 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306448.2
title: StrainInfo SI-ID 306448.2

description: StrainInfo dataset 306448 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306449.2
title: StrainInfo SI-ID 306449.2

description: StrainInfo dataset 306449 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306450.2
title: StrainInfo SI-ID 306450.2

description: StrainInfo dataset 306450 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306451.2
title: StrainInfo SI-ID 306451.2

description: StrainInfo dataset 306451 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306452.2
title: StrainInfo SI-ID 306452.2

description: StrainInfo dataset 306452 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306453.2
title: StrainInfo SI-ID 306453.2

description: StrainInfo dataset 306453 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306454.2
title: StrainInfo SI-ID 306454.2

description: StrainInfo dataset 306454 about a strain of Ophiostoma bacillisporum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306455.2
title: StrainInfo SI-ID 306455.2

description: StrainInfo dataset 306455 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306456.2
title: StrainInfo SI-ID 306456.2

description: StrainInfo dataset 306456 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306457.2
title: StrainInfo SI-ID 306457.2

description: StrainInfo dataset 306457 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306458.2
title: StrainInfo SI-ID 306458.2

description: StrainInfo dataset 306458 about a strain of a not identified species. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306459.2
title: StrainInfo SI-ID 306459.2

description: StrainInfo dataset 306459 about a strain of a not identified species. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306460.2
title: StrainInfo SI-ID 306460.2

description: StrainInfo dataset 306460 about a strain of Saccharomyces cerevisiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306461.2
title: StrainInfo SI-ID 306461.2

description: StrainInfo dataset 306461 about a strain of Saccharomyces cerevisiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306462.2
title: StrainInfo SI-ID 306462.2

description: StrainInfo dataset 306462 about a strain of Wickerhamomyces ciferrii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306463.2
title: StrainInfo SI-ID 306463.2

description: StrainInfo dataset 306463 about a strain of Candida oleophila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306464.2
title: StrainInfo SI-ID 306464.2

description: StrainInfo dataset 306464 about a strain of Rhodotorula mucilaginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306465.2
title: StrainInfo SI-ID 306465.2

description: StrainInfo dataset 306465 about a strain of Rhodotorula babjevae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306466.2
title: StrainInfo SI-ID 306466.2

description: StrainInfo dataset 306466 about a strain of Kurtzmaniella quercitrusa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306468.2
title: StrainInfo SI-ID 306468.2

description: StrainInfo dataset 306468 about a strain of Debaryomyces hansenii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306469.2
title: StrainInfo SI-ID 306469.2

description: StrainInfo dataset 306469 about a strain of Pichia membranifaciens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306470.2
title: StrainInfo SI-ID 306470.2

description: StrainInfo dataset 306470 about a strain of Grifola frondosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306471.2
title: StrainInfo SI-ID 306471.2

description: StrainInfo dataset 306471 about a strain of Debaryomyces nepalensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306472.2
title: StrainInfo SI-ID 306472.2

description: StrainInfo dataset 306472 about a strain of Debaryomyces nepalensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306473.2
title: StrainInfo SI-ID 306473.2

description: StrainInfo dataset 306473 about a strain of Pichia membranifaciens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306474.2
title: StrainInfo SI-ID 306474.2

description: StrainInfo dataset 306474 about a strain of Pichia kluyveri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306475.2
title: StrainInfo SI-ID 306475.2

description: StrainInfo dataset 306475 about a strain of Saccharomycopsis fermentans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306476.2
title: StrainInfo SI-ID 306476.2

description: StrainInfo dataset 306476 about a strain of Hyphopichia burtonii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306477.2
title: StrainInfo SI-ID 306477.2

description: StrainInfo dataset 306477 about a strain of Debaryomyces nepalensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306478.2
title: StrainInfo SI-ID 306478.2

description: StrainInfo dataset 306478 about a strain of Debaryomyces nepalensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306479.2
title: StrainInfo SI-ID 306479.2

description: StrainInfo dataset 306479 about a strain of Wickerhamomyces pijperi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306480.2
title: StrainInfo SI-ID 306480.2

description: StrainInfo dataset 306480 about a strain of Candida sake. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306481.2
title: StrainInfo SI-ID 306481.2

description: StrainInfo dataset 306481 about a strain of Candida sake. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306482.2
title: StrainInfo SI-ID 306482.2

description: StrainInfo dataset 306482 about a strain of Candida sake. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306483.2
title: StrainInfo SI-ID 306483.2

description: StrainInfo dataset 306483 about a strain of Perenniporia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306484.2
title: StrainInfo SI-ID 306484.2

description: StrainInfo dataset 306484 about a strain of Truncospora tephropora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306485.2
title: StrainInfo SI-ID 306485.2

description: StrainInfo dataset 306485 about a strain of Foraminispora rugosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306486.2
title: StrainInfo SI-ID 306486.2

description: StrainInfo dataset 306486 about a strain of Larssoniporia tropicalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306487.2
title: StrainInfo SI-ID 306487.2

description: StrainInfo dataset 306487 about a strain of Sclerotus extensus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306488.2
title: StrainInfo SI-ID 306488.2

description: StrainInfo dataset 306488 about a strain of Beverwykella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306489.2
title: StrainInfo SI-ID 306489.2

description: StrainInfo dataset 306489 about a strain of Haploporus alabamae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306490.2
title: StrainInfo SI-ID 306490.2

description: StrainInfo dataset 306490 about a strain of Perenniporia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306491.2
title: StrainInfo SI-ID 306491.2

description: StrainInfo dataset 306491 about a strain of Larssoniporia tropicalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306492.2
title: StrainInfo SI-ID 306492.2

description: StrainInfo dataset 306492 about a strain of Cerrena hydnoides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306493.2
title: StrainInfo SI-ID 306493.2

description: StrainInfo dataset 306493 about a strain of a not identified species. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306494.2
title: StrainInfo SI-ID 306494.2

description: StrainInfo dataset 306494 about a strain of Larssoniporia tropicalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306495.2
title: StrainInfo SI-ID 306495.2

description: StrainInfo dataset 306495 about a strain of Sclerotus extensus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306496.2
title: StrainInfo SI-ID 306496.2

description: StrainInfo dataset 306496 about a strain of Rhizopus arrhizus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306497.2
title: StrainInfo SI-ID 306497.2

description: StrainInfo dataset 306497 about a strain of Rhizopus microsporus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306498.2
title: StrainInfo SI-ID 306498.2

description: StrainInfo dataset 306498 about a strain of Monascus pilosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306499.2
title: StrainInfo SI-ID 306499.2

description: StrainInfo dataset 306499 about a strain of Monascus pilosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306500.2
title: StrainInfo SI-ID 306500.2

description: StrainInfo dataset 306500 about a strain of Monascus pilosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306501.2
title: StrainInfo SI-ID 306501.2

description: StrainInfo dataset 306501 about a strain of Monascus pilosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306502.2
title: StrainInfo SI-ID 306502.2

description: StrainInfo dataset 306502 about a strain of Trametes gibbosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306503.2
title: StrainInfo SI-ID 306503.2

description: StrainInfo dataset 306503 about a strain of Syncephalastrum racemosum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306505.2
title: StrainInfo SI-ID 306505.2

description: StrainInfo dataset 306505 about a strain of Yamadazyma mexicana. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306506.2
title: StrainInfo SI-ID 306506.2

description: StrainInfo dataset 306506 about a strain of Meyerozyma caribbica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306507.2
title: StrainInfo SI-ID 306507.2

description: StrainInfo dataset 306507 about a strain of Geotrichum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306508.2
title: StrainInfo SI-ID 306508.2

description: StrainInfo dataset 306508 about a strain of Meyerozyma. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id306509.2
title: StrainInfo SI-ID 306509.2

description: StrainInfo dataset 306509 about a strain of Ophiostoma distortum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.5281/zenodo.10016499
title: Datasets and Scripts associated with "Cryptic endogenous retrovirus subfamilies in the primate lineage"

description: Scripts and datasets included here were used for the main analyses in the study of "Cryptic endogenous retrovirus subfamilies in the primate lineage".

Study abstract:

Many endogenous retroviruses (ERVs) in the human genome are primate-specific and have contributed novel cis-regulatory elements and transcripts. However, current approaches for classifying and annotating ERVs and their long terminal repeats (LTRs) have limited resolution and are inaccurate. Here, we developed a new annotation based on phylogenetic analysis and cross-species conservation. Focusing on the evolutionarily young LTR subfamilies known as MER11A/B/C, we revealed the presence of four ‘new subfamilies’, that better explain the epigenetic heterogeneity observed within the MER11 instances, suggesting a new annotation for 412 (19.8%) of these repeat elements. Furthermore, we functionally validated the regulatory potential of these four new subfamilies using a massively parallel reporter assay (MPRA), which also identified motifs associated with their differential activities. Combining MPRA with new annotations across primates revealed an ape-specific gain of SOX-related motifs through a single-nucleotide deletion. Lastly, by applying our approach across 53 simian-enriched LTR subfamilies, we defined a total of 75 new subfamilies and found that 3,807 (30.0%) instances from 26 LTR subfamilies could be categorized into a novel annotation, many of which with a distinct epigenetic profile. Thus, with our refined annotation of simian-enriched LTRs, it will be possible to better understand the evolution in primate genomes and potentially identify new roles for ERVs and their LTRs in the hosts.