cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6754109
title: Supplementary Material for: Cerebrovascular Accident Risk in a Population with Periodic Limb Movements of Sleep: A Preliminary Meta-Analysis

description: <b><i>Background and Purpose:</i></b> Periodic limb movements of sleep (PLMS) are usually comorbid with hypertension, tachycardia, and coronary arterial diseases, which are also risk factors for cerebrovascular accidents (CVA). However, evidence about the relationship between CVA and PLMS is still weak. The aim of this study was to investigate (1) the prevalence of CVA in patients with PLMS, and (2) the severity of PLMS in patients with or without CVA through a meta-analysis. <b><i>Methods:</i></b> The electronic databases of PubMed, Embase, ScienceDirect, ClinicalKey, Cochrane Library, ProQuest, Web of Science, and ClinicalTrials.gov were searched. The inclusion criteria were (1) articles investigating comorbidity between PLMS and CVA, and (2) clinical trials in humans. <b><i>Results:</i></b> This meta-analysis included (1) 9,823 patients with PLMS and 9,416 controls from 5 studies to analyze the prevalence of CVA in PLMS, and (2) 158 patients with PLMS with CVA and 88 PLMS controls without CVA from 3 studies to analyze the severity of PLMS with and without CVA. The results showed (1) significantly higher comorbidity rates of CVA in the patients with PLMS than in the controls without PLMS (OR 1.267, <i>p</i> = 0.019), and (2) higher PLM index in the patients with CVA than in the controls (Hedges’ <i>g</i> = 0.860, <i>p</i> = 0.001; means difference: 4.435, <i>p</i> = 0.016). <b><i>Conclusions:</i></b> The results revealed (1) a worse severity of PLMS in the patients with CVA, and (2) increased prevalence of CVA in the patients with PLMS. Based on our results, the patients had a higher prevalence of CVA within 8 years of a diagnosis of PLMS compared to those without PLMS by about 1.3-fold. Whether (1) patients with PLMS receiving treatment have a similar incidence of stroke to those without PLMS, and (2) secondary stroke prevention can lower the severity of PLMS or whether those with severe PLMS have a higher risk of stroke is still inconclusive. Future studies investigating the prevalence of CVA in patients with PLMS should use a follow-up period of over 8 years.
DOI: 10.6084/m9.figshare.6754097
title: Code for Cheplygina et al - Dissimilarity-based ensembles for multiple instance learning, TNNLS 2016

description: This code is used in the papers:<br>Cheplygina, V., Tax, D. M., & Loog, M. (2016). Dissimilarity-based ensembles for multiple instance learning. IEEE transactions on neural networks and learning systems, 27(6), 1379-1391.<br> and<br>Cheplygina, V., Tax, D. M. J., & Loog, M. (2013). Combining instance information to classify bags. In International Workshop on Multiple Classifier Systems (pp. 13-24).<br>
DOI: 10.6084/m9.figshare.6753968
title: Subject 4_csv

description: CSV files of S4
DOI: 10.6084/m9.figshare.6753968.v1
title: Subject 4_csv

description: CSV files of S4
DOI: 10.6084/m9.figshare.12890717.v1
title: Supporting Information from Does conspicuousness scale linearly with colour distance? A test using reef fish

description: RGB values, radiance measurements, spectral sensitiivities
DOI: 10.6084/m9.figshare.12890717
title: Supporting Information from Does conspicuousness scale linearly with colour distance? A test using reef fish

description: RGB values, radiance measurements, spectral sensitiivities
DOI: 10.6084/m9.figshare.6753920
title: MOESM4 of TROP2 methylation and expression in tamoxifen-resistant breast cancer

description: Additional file 4: Table S4. List of CpGs that are Hypermethylated in TMX2-28 compared to MCF-7 and have Decreased Methylation after 5-Aza-dC Treatment.
DOI: 10.6084/m9.figshare.6753920.v1
title: MOESM4 of TROP2 methylation and expression in tamoxifen-resistant breast cancer

description: Additional file 4: Table S4. List of CpGs that are Hypermethylated in TMX2-28 compared to MCF-7 and have Decreased Methylation after 5-Aza-dC Treatment.
DOI: 10.6084/m9.figshare.6753869
title: Additional file 1: of Promoting quality use of medicines in South-East Asia: reports from country situational analyses

description: Dataset created from extraction of data from country situational analysis reports, all available online at: http://www.searo.who.int/entity/medicines/country_situational_analysis/en/ and http://www.searo.who.int/entity/medicines/en/ . Excel file of the dataset created from data extracted from the country situational analysis reports and which was used in the analysis described in this manuscript. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6753869.v1
title: Additional file 1: of Promoting quality use of medicines in South-East Asia: reports from country situational analyses

description: Dataset created from extraction of data from country situational analysis reports, all available online at: http://www.searo.who.int/entity/medicines/country_situational_analysis/en/ and http://www.searo.who.int/entity/medicines/en/ . Excel file of the dataset created from data extracted from the country situational analysis reports and which was used in the analysis described in this manuscript. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6753851
title: Additional file 1: of Exploring the cellular network of metabolic flexibility in the adipose tissue

description: The cellular network of metabolic flexibility with the visualised data (7Z 42Â kb)
DOI: 10.6084/m9.figshare.6753851.v1
title: Additional file 1: of Exploring the cellular network of metabolic flexibility in the adipose tissue

description: The cellular network of metabolic flexibility with the visualised data (7Z 42Â kb)
DOI: 10.6084/m9.figshare.6753749
title: Additional file 2: of Bulk tumour cell migration in lung carcinomas might be more common than epithelial-mesenchymal transition and be differently regulated

description: Table S2. Raw data of the evaluation of the metastasis TMA. Prim = data of the primary tumor and META = data from the corresponding metastasis; in case of several metastasis the data were pooled and a mean was calculated. In addition statistical calculations for each marker were added (student t-test for paired data). (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.6753749.v1
title: Additional file 2: of Bulk tumour cell migration in lung carcinomas might be more common than epithelial-mesenchymal transition and be differently regulated

description: Table S2. Raw data of the evaluation of the metastasis TMA. Prim = data of the primary tumor and META = data from the corresponding metastasis; in case of several metastasis the data were pooled and a mean was calculated. In addition statistical calculations for each marker were added (student t-test for paired data). (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.6753734
title: Additional file 1: of Bulk tumour cell migration in lung carcinomas might be more common than epithelial-mesenchymal transition and be differently regulated

description: Table S1. Raw data of each case of the study set for the evaluated antibodies. Cases are numbered consecutively. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.6753734.v1
title: Additional file 1: of Bulk tumour cell migration in lung carcinomas might be more common than epithelial-mesenchymal transition and be differently regulated

description: Table S1. Raw data of each case of the study set for the evaluated antibodies. Cases are numbered consecutively. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.6753668
title: Additional file 1: of Sex-specific effects of perinatal dioxin exposure on eating behavior in 3-year-old Vietnamese children

description: Data of CEBQ and dioxins in 3-year-old Vietnamese children (a cross sectional study). (XLSX 43 kb)
DOI: 10.6084/m9.figshare.6753668.v1
title: Additional file 1: of Sex-specific effects of perinatal dioxin exposure on eating behavior in 3-year-old Vietnamese children

description: Data of CEBQ and dioxins in 3-year-old Vietnamese children (a cross sectional study). (XLSX 43 kb)
DOI: 10.6084/m9.figshare.6753614
title: Additional file 2: of Docetaxel facilitates lymphatic-tumor crosstalk to promote lymphangiogenesis and cancer progression

description: Table S2. Luminex Data. Luminex data used to generate heat map in Fig. 6. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6753614.v1
title: Additional file 2: of Docetaxel facilitates lymphatic-tumor crosstalk to promote lymphangiogenesis and cancer progression

description: Table S2. Luminex Data. Luminex data used to generate heat map in Fig. 6. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.12890729.v1
title: Electronic supplementary data file from Distribution modelling of an introduced species: do adaptive genetic markers affect potential range?

description: Biological invasions have increased in the last decades mostly due to anthropogenic causes such as globalization of trade. Because invaders sometimes cause large economic losses and ecological disturbances, estimating their origin and potential geographical ranges is useful. <i>Drosophila subobscura</i> is native to the Old World but was introduced in the New World in the late 1970s and spread widely. We incorporate information on adaptive genetic markers into ecological niche modelling and then estimate the most probable geographical source of colonizers; evaluate whether the genetic bottleneck experienced by founders affects their potential distribution, and finally test whether this species has spread to all its potential suitable habitats worldwide. We find the environmental space occupied by this species in its native and introduced distributions are notably the same, although the introduced niche has shifted slightly towards higher temperature and lower precipitation. The genetic bottleneck of founding individuals was a key factor limiting the spread of this introduced species. We also find that regions in the Mediterranean and north-central Portugal show the highest probability of being the origin of the colonizers. Using genetically informed environmental niche modelling can enhance our understanding of the initial colonization and spread of invasive species, and also elucidate potential areas of future expansions worldwide.
DOI: 10.6084/m9.figshare.12890729
title: Electronic supplementary data file from Distribution modelling of an introduced species: do adaptive genetic markers affect potential range?

description: Biological invasions have increased in the last decades mostly due to anthropogenic causes such as globalization of trade. Because invaders sometimes cause large economic losses and ecological disturbances, estimating their origin and potential geographical ranges is useful. <i>Drosophila subobscura</i> is native to the Old World but was introduced in the New World in the late 1970s and spread widely. We incorporate information on adaptive genetic markers into ecological niche modelling and then estimate the most probable geographical source of colonizers; evaluate whether the genetic bottleneck experienced by founders affects their potential distribution, and finally test whether this species has spread to all its potential suitable habitats worldwide. We find the environmental space occupied by this species in its native and introduced distributions are notably the same, although the introduced niche has shifted slightly towards higher temperature and lower precipitation. The genetic bottleneck of founding individuals was a key factor limiting the spread of this introduced species. We also find that regions in the Mediterranean and north-central Portugal show the highest probability of being the origin of the colonizers. Using genetically informed environmental niche modelling can enhance our understanding of the initial colonization and spread of invasive species, and also elucidate potential areas of future expansions worldwide.
DOI: 10.6084/m9.figshare.6753566
title: Additional file 1: of FC_analysis: a tool for investigating atomic force microscopy maps of force curves

description: FC_analysis executable file. (EXE 498 kb)
DOI: 10.6084/m9.figshare.6753539
title: Additional file 4: of Diversity, evolution, and function of myriapod hemocyanins

description: Data S1. Nucleotide sequences of the Hc and PPO cDNAs and gene identified in this study. (ZIP 81 kb)
DOI: 10.6084/m9.figshare.6753539.v1
title: Additional file 4: of Diversity, evolution, and function of myriapod hemocyanins

description: Data S1. Nucleotide sequences of the Hc and PPO cDNAs and gene identified in this study. (ZIP 81 kb)
DOI: 10.6084/m9.figshare.6753500
title: Additional file 2: of Novel proteome and acetylome of Bemisia tabaci Q in response to Cardinium infection

description: Table S1. List of proteins identified and quantified by the TMT analysis in the experiment. Table S2. List of differential expressed proteins by the TMT analysis in the experiment. Table S3. Subcellular location of differentially expressed proteins compared C*+ to C− strains. Table S4. Gene Ontology classification of differentially expressed proteins compared C*+ to C− strains. Table S5. GO annotation of differentially expressed proteins compared C*+ to C− strains. Table S6. KEGG pathway of differentially expressed proteins compared C*+ to C− strains. Table S7. Detailed information on identified acetylated peptides compared C*+ to C− strains. Table S8. Detailed information of differentially expressed acetylation peptides compared C*+ to C− strains. Table S9. Amino acid sequence analysis from the − 10 to + 10 positions around the acetylated lysine. Table S10. GO functional classification of differentially expressed acetylated proteins compared C*+ to C− strains. Table S11. GO enrichment analysis of differentially expressed lysine acetylated proteins using Blast2GO. Table S12. KEGG pathway enrichment analysis of differentially expressed acetylated proteins compared C*+ to C− strains. Table S13. Domain enrichment analysis of differentially expressed acetylated proteins compared C*+ to C− strains. Table S14. Interaction networks of differentially expressed Kac proteins compared C*+ to C− strains. (ZIP 953 kb)
DOI: 10.6084/m9.figshare.6753500.v1
title: Additional file 2: of Novel proteome and acetylome of Bemisia tabaci Q in response to Cardinium infection

description: Table S1. List of proteins identified and quantified by the TMT analysis in the experiment. Table S2. List of differential expressed proteins by the TMT analysis in the experiment. Table S3. Subcellular location of differentially expressed proteins compared C*+ to C− strains. Table S4. Gene Ontology classification of differentially expressed proteins compared C*+ to C− strains. Table S5. GO annotation of differentially expressed proteins compared C*+ to C− strains. Table S6. KEGG pathway of differentially expressed proteins compared C*+ to C− strains. Table S7. Detailed information on identified acetylated peptides compared C*+ to C− strains. Table S8. Detailed information of differentially expressed acetylation peptides compared C*+ to C− strains. Table S9. Amino acid sequence analysis from the − 10 to + 10 positions around the acetylated lysine. Table S10. GO functional classification of differentially expressed acetylated proteins compared C*+ to C− strains. Table S11. GO enrichment analysis of differentially expressed lysine acetylated proteins using Blast2GO. Table S12. KEGG pathway enrichment analysis of differentially expressed acetylated proteins compared C*+ to C− strains. Table S13. Domain enrichment analysis of differentially expressed acetylated proteins compared C*+ to C− strains. Table S14. Interaction networks of differentially expressed Kac proteins compared C*+ to C− strains. (ZIP 953 kb)
DOI: 10.6084/m9.figshare.6753473
title: Additional file 1: of Novel proteome and acetylome of Bemisia tabaci Q in response to Cardinium infection

description: Figure S1. Amplification product of Cardinium-infected Bemisia tabaci Q using specific primers. 1–10: Cardinium-infected B. tabaci Q; +: positive control; −: negative control; M: DNA marker. Figure S2. The subcellular location of up- (A) and down-(B) regulated proteins compared C*+ to C− strains. Figure S3. GO distribution of up-regulated proteins in biological process (A), cellular component (B) and molecular function terms (C) compared C*+ to C− strains. Figure S4. GO classification of down-regulated proteins in biological process (A), cellular component (B) and molecular function terms (C) compared C*+ to C− strains. (ZIP 158 kb)
DOI: 10.6084/m9.figshare.6753473.v1
title: Additional file 1: of Novel proteome and acetylome of Bemisia tabaci Q in response to Cardinium infection

description: Figure S1. Amplification product of Cardinium-infected Bemisia tabaci Q using specific primers. 1–10: Cardinium-infected B. tabaci Q; +: positive control; −: negative control; M: DNA marker. Figure S2. The subcellular location of up- (A) and down-(B) regulated proteins compared C*+ to C− strains. Figure S3. GO distribution of up-regulated proteins in biological process (A), cellular component (B) and molecular function terms (C) compared C*+ to C− strains. Figure S4. GO classification of down-regulated proteins in biological process (A), cellular component (B) and molecular function terms (C) compared C*+ to C− strains. (ZIP 158 kb)
DOI: 10.6084/m9.figshare.6753404
title: Concordance matrix for BNE energy consumption and EI-O industry sectors in Chile

description: Binary concordance matrix for Chilean national energy balance and input-output industry sectors 2013. Based on the International Standard Industrial Classification of All Economic Activities (ISIC) and Chilean methodological documents.
DOI: 10.6084/m9.figshare.6753317
title: Chisholm et al. Ecology 2018 data

description: This file contains all the field observation and experimental data used in the Ecology publication by Chisholm et al. "Reciprocal plant-mediated interactions between a virus and a non-vector herbivore".
DOI: 10.6084/m9.figshare.6753404.v2
title: Concordance matrix for BNE energy consumption and EI-O industry sectors in Chile

description: Binary concordance matrix for Chilean national energy balance and input-output industry sectors 2013. Based on the International Standard Industrial Classification of All Economic Activities (ISIC) and Chilean methodological documents.
DOI: 10.6084/m9.figshare.6752894
title: Dataset for: Reproductive isolation in alpine gingers: how do co-existing Roscoea (R. purpurea and R. tumjensis) conserve species integrity?

description: Two Himalayan alpine gingers, Roscoea purpurea and R. tumjensis, occur sympatrically in central Nepal and have such similar morphology that it is not clear whether or how they maintain a distinct identity. Our quantitative measurements of the components of reproductive isolation show that they are, in fact, completely isolated by a combination of phenological displacement of flowering and complete fidelity of visitation by different pollinator species, a long-tongued fly for R. purpurea and bumblebees for R. tumjensis. The disjunction of pollinators seems surprising until the floral traits are analysed from the pollinators’ perspective. Models of both dipteran and hymenopteran colour vision indicate that flowers of the two species would be easily discriminable. Furthermore, the nectar of R. purpurea is less accessible, requiring deep probing from long-tongued flies, while the nectar of R. tumjensis flowers is available to the shorter-tongued bumblebees. Although current barriers need not reflect evolutionary history, two possible pathways to isolation seem likely depending on whether displacement of flowering time or novel floral signals arose first. These two sympatric Roscoea species add to accumulating evidence of the primacy of early acting, pollination traits in speciation among angiosperms even in the absence of post-zygotic incompatibility.
DOI: 10.6084/m9.figshare.6752882
title: Evolution of egg shape in birds: adaptations during the incubation period

description: <pre>These files are supplements for Birkhead TR, Thompson JE, Biggins JD, Montgomerie R (2018) The evolution of egg shape in birds: selection during the incubation period. Ibis in press, doi: 10.1111/ibi.12658 The files are: aukpenguinDATA.csv = all of the data analyzed in this paper; aukpenguin.Rmd = R script for all of the analyses reported in the main text plus the Supplementary Information for the paper. Also included are tests of statistical assumptions and some further exploration of the patterns reported. This file includes a summary of all the variables in the datafile (aukpenguinDATA.csv); aukpenguinTREE.phy = phylogenetic information in Newick format; BirkheadStatsSuppl.pdf = PDF generated by knitting aukpenguin.Rmd</pre>
DOI: 10.6084/m9.figshare.6752873
title: Dorsal root ganglion explant data and supporting code

description: Dorsal root ganglion explant data and supporting code
DOI: 10.6084/m9.figshare.6752894.v1
title: Dataset for: Reproductive isolation in alpine gingers: how do co-existing Roscoea (R. purpurea and R. tumjensis) conserve species integrity?

description: Two Himalayan alpine gingers, Roscoea purpurea and R. tumjensis, occur sympatrically in central Nepal and have such similar morphology that it is not clear whether or how they maintain a distinct identity. Our quantitative measurements of the components of reproductive isolation show that they are, in fact, completely isolated by a combination of phenological displacement of flowering and complete fidelity of visitation by different pollinator species, a long-tongued fly for R. purpurea and bumblebees for R. tumjensis. The disjunction of pollinators seems surprising until the floral traits are analysed from the pollinators’ perspective. Models of both dipteran and hymenopteran colour vision indicate that flowers of the two species would be easily discriminable. Furthermore, the nectar of R. purpurea is less accessible, requiring deep probing from long-tongued flies, while the nectar of R. tumjensis flowers is available to the shorter-tongued bumblebees. Although current barriers need not reflect evolutionary history, two possible pathways to isolation seem likely depending on whether displacement of flowering time or novel floral signals arose first. These two sympatric Roscoea species add to accumulating evidence of the primacy of early acting, pollination traits in speciation among angiosperms even in the absence of post-zygotic incompatibility.
DOI: 10.6084/m9.figshare.6752882.v2
title: Evolution of egg shape in birds: adaptations during the incubation period

description: <pre>These files are supplements for Birkhead TR, Thompson JE, Biggins JD, Montgomerie R (2018) The evolution of egg shape in birds: selection during the incubation period. Ibis in press, doi: 10.1111/ibi.12658 The files are: aukpenguinDATA.csv = all of the data analyzed in this paper; aukpenguin.Rmd = R script for all of the analyses reported in the main text plus the Supplementary Information for the paper. Also included are tests of statistical assumptions and some further exploration of the patterns reported. This file includes a summary of all the variables in the datafile (aukpenguinDATA.csv); aukpenguinTREE.phy = phylogenetic information in Newick format; BirkheadStatsSuppl.pdf = PDF generated by knitting aukpenguin.Rmd</pre>
DOI: 10.6084/m9.figshare.6752873.v1
title: Dorsal root ganglion explant data and supporting code

description: Dorsal root ganglion explant data and supporting code