cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5291/ill-data.1-20-69
title: Developing new analysis methods for fixed window scans for soft colloidal suspensions
DOI: 10.5291/ill-data.9-13-637
title: Studying thermal protein denaturation as a nanoscopic structure-dynamics relationship
DOI: 10.5439/1617265
title: Holographic Detector for Clouds (HOLODEC) droplet size distributions

description: The Holographic Detector for Clouds (HOLODEC) measures droplets of the size range 6 micron up to 1000 mm in an instantaneous sample volume. Measurement rate is 3.3 Hz in raw resolution; here the data is averaged over 1 s. The analysis is a combination of automatic and manual processing; details can be found in the file header.
DOI: 10.5441/001/1.338
title: Data from: Flight behaviour of Red Kites within their breeding area in relation to local weather variables: conclusions with regard to wind turbine collision mitigation

description: 1. Birds and bats are prone to collisions with wind turbines. To reduce the number of bat collisions, weather variables are commonly used to shut down wind turbines when a certain constellation of weather variables occurs. Such a general approach might also be interesting to mitigate raptor collisions. Studies on the relationship between flight behaviour and weather variables are needed. 2. To investigate the flight behaviour of raptors within their breeding area in relation to local weather variables, we used high resolution data of flight tracks of Red Kites collected on a wind energy test site (Germany). Birds were tracked with a Laser Range Finder (LRF) or with GPS transmitters. Weather variables were continuously registered on site. We used generalized linear mixed models to analyse the influence of weather variables and of the measurement method on different flight parameters. Furthermore, we investigated the probability of flying within a virtual rotor height range defined by three hub heights (84 m, 94 m, 140 m, diameter: 112 m). 3. The median flight altitude measured by LRF (52.5 m, 95% CI: 44.9–61.0, N=2,511) was on average 25 m higher than the corrected one resulting from GPS (27.8 m, 95% CI: 24.7–31.2, N=6,792). Flight speed also differed between methods (GPS: 29.2 km/h, 95% CI: 28.2–30.3 km/h; LRF: 25.1 km/h, 95% CI: 24.0–26.3 km/h). The effects of the weather variables were weak. Birds tended to fly less and lower during wet (humid, rainy, or foggy) than dry weather, and lower during strong than weak winds. Probabilities of flying within a height range of virtual rotors increased with decreasing hub height, and hence ground clearance. 4. Synthesis and applications: Flight behaviour was highly variable. Flights occurred during all weather conditions at different altitudes throughout the day over the entire season. Further research into the relationship between flight behaviour, weather variables, collisions, and other factors is needed as a basis for developing shutdown regimes generally suitable for raptors. The mean flight altitude and speed differed between the measurement methods. Any values resulting from studies should be interpreted in the context of the method.
DOI: 10.6084/m9.figshare.23500770
title: NNFM with varying training size

description: We varied the training data percentage from 5%-95% to test the performance of the neural network fitting the forward problem of diffuse reflectance spectroscopy. With each training data size, the neural network was trained independently for 20 times. Total normalized mean absolute errors over all source detector distances are recorded.
DOI: 10.6084/m9.figshare.23898927
title: ML fitted Hb data

description: Extracted optical properties of the phantoms with fixed mus using NN-based inverse model. The fitted diffuse reflectance, extracted mua, extracted mus, extracted g were also included. In the two numbers in suffix, first one indicates the reference phantom data chosen, second one indicates the target phantom being fitted.
DOI: 10.6084/m9.figshare.23898960
title: MLCfitted Hb data

description: Extracted optical properties of the phantoms with fixed mus using MCLUT inverse model. The fitted diffuse reflectance, extracted mua, extracted mus, extracted g were also included.In the two numbers in suffix, first one indicates the reference phantom data chosen, second one indicates the target phantom being fitted.
DOI: 10.6084/m9.figshare.23898969
title: Measured PS data

description: Measured data of the phantoms with fixed mua. The measured diffuse reflectance spectra, expected mua, expected mus, expected g were also included.
DOI: 10.6084/m9.figshare.23898975
title: ML fitted PS data

description: Extracted optical properties of the phantoms with fixed mua using NN-based inverse model. The fitted diffuse reflectance, extracted mua, extracted mus, extracted g were also included.In the two numbers in suffix, first one indicates the reference phantom data chosen, second one indicates the target phantom being fitted.
DOI: 10.6084/m9.figshare.23898978
title: MC fitted PS data

description: Extracted optical properties of the phantoms with fixed mua using MCLUT inverse model. The fitted diffuse reflectance, extracted mua, extracted mus, extracted g were also included.In the two numbers in suffix, first one indicates the reference phantom data chosen, second one indicates the target phantom being fitted.
DOI: 10.6084/m9.figshare.24648309
title: PN_FREP_10GHz.txt

description: The phase noise data for the repetition-rate stabilization as displayed in Figure 4.
DOI: 10.6084/m9.figshare.24648312
title: PN_FCEO_300MHz.txt

description: The phase noise data for the carrier-envelope offset stabilization as displayed in Figure 4.
DOI: 10.5067/measures/minds/data204
title: OMI/Aura NO2 Tropospheric, Stratospheric and Total Columns MINDS L2 Swath 1-Orbit 13 km x 24 km V1.1
DOI: 10.5281/zenodo.11188122
title: Alberta Differential Magnetometer Measurement (DMM) Data from 2021

description: This data product consists of a magnetometer dataset from the augmented differential magnetometer measurement (DMM) study conducted in Alberta, Canada in 2021 and GIC data from a nearby transformer substation. This data was analyzed and presented in the paper "Using a Differential Magneoter Measurement to Infer Geomagnetically Induced Currents: An Augmented Approach." Specifically, these datasets were used to create Figures 3,  4, 5, 6, 7, 9 and 10 in this paper.

The data files available here are from two magnetometers (USB4 and USB5) on a magnetically quiet day, September 26th, 2021, and a magnetically active day, October, 12th, 2021. USB4 data is from the underline sensor and USB5 is from the remote sensor. Each DMM data file includes the time in UT and magnetic field measurements in the x, y, and z components, where Bx is magnetic north and By is magnetic east. The GIC data file includes the local time (Mountain Daylight Time = GMT-6) and the transformer neutral-to-ground current at the Ellerslie substation (89S) in both transformers (T1 and T2) during the magnetic storm on October 12th, 2021. The magnetic data has a resolution of 1 Hz. The GIC data has a resolution of 0.5 Hz.
DOI: 10.5281/zenodo.3736326
title: Dataset to accompany "Deposition of brown carbon onto snow: changes of snow optical and radiative properties" by Beres et al., 2020

description: This dataset, organized in an Excel spreadsheet, accompanies: Beres, N. D., Sengupta, D., Samburova, V., Khlystov, A. Y., and Moosmüller, H.: Deposition of brown carbon onto snow: changes in snow optical and radiative properties, Atmos. Chem. Phys., 20, 6095–6114, https://doi.org/10.5194/acp-20-6095-2020, 2020. Each tab of the spreadsheet represents data presented in Tables and Figures of the manuscript, which allows for the replication of the figure or for use in calculations presented throughout the manuscript. Any questions or comments should be forwarded to the corresponding author.
DOI: 10.5281/zenodo.3963474
title: Gene expression counts from fibroblast, strand-specific, BCM UDN

description: <strong>File description:</strong> Gene-level counts using the gtf file from the release 34 of GENCODE https://www.gencodegenes.org/human/release_34 Split counts spanning from one exon to another using an annotation-free algorithm, therefore capturing new splice sites Non-split counts covering exon-intron boundaries Sample annotation describing each sample from the dataset Description file with global information from the dataset <strong>Use: </strong>The count matrices are intended to help researchers that are interested in using RNA-Seq data with the purpose of diagnostics. Researchers can merge their own dataset with the downloaded ones, provided the tissue, genome build, strand, and paired end specifications match. Afterwards, the DROP pipeline can be used to compute expression and splicing outliers (https://github.com/gagneurlab/drop). <strong>Maintainer: </strong>Vicente A. Yépez, yepez@in.tum.de <strong>URL:</strong> https://github.com/gagneurlab/drop/<br> <strong>Title</strong>: BCM UDN Fibroblast<br> <strong>Number of samples</strong>: 139<br> <strong>Tissue</strong>: Fibroblast<br> <strong>Organism</strong>: Homo sapiens<br> <strong>Genome assembly:</strong> hg19<br> <strong>Gene annotation</strong>: gencode34<br> <strong>Disease (ICD-10: N)</strong>: : D17: 1, D84: 12, E34: 2, G82: 1, H57: 3, K92: 3, M25: 18, NONE: 35, Q02: 1, Q20: 5, Q33: 2, Q89: 12, R62: 44<br> <strong>Strand specific</strong>: TRUE<br> <strong>Paired end</strong>: TRUE<br> <strong>Protocol</strong>: poly(A) enrichment<br> <strong>Dataset contact</strong>: David Murdock, david.murdock@bcm.edu <strong>Citation:</strong> Cite both the resource using Zenodo's citation and the publication under References
description: {"references": ["Murdock, D. R. et al. Transcriptome-directed analysis for Mendelian disease diagnosis overcomes limitations of conventional genomic testing. JCI 131, e141500 (2021)."]}
DOI: 10.5066/f7d21wgf
title: USGS Measurements of Water Quality in San Francisco Bay (CA), 2016-2021 (ver. 4.0, March 2023)

description: The U.S. Geological Survey maintains a program of water-quality studies in San Francisco Bay (CA) that began in 1969. This U.S.G.S. Data Release is a continuation of the previously published 1969-2015 dataset (Cloern and Schraga, 2016; Schraga and Cloern, 2017), it will archive and make available all measurements from 2016 and thereafter. Each year, a data file containing the previous years data will be added. Water-quality constituent measurements include salinity, temperature, light attenuation coefficient, and concentrations of chlorophyll-a, dissolved oxygen, suspended particulate matter, and dissolved inorganic nutrients (nitrate, nitrite, ammonium, phosphate and silicate). The sampling is conducted at least monthly at 37 fixed sampling locations along a 145-km transect from lower South San Francisco Bay to the lower Sacramento River. A map and table of sampling locations are included in this Data Release. The project website contains more details about this research program and data collection. Data on the site are updated monthly and available for download : https://sfbay.wr.usgs.gov/access/wqdata

Cloern, J.E., and Schraga, T.S., 2016, USGS Measurements of Water Quality in San Francisco Bay (CA), 1969-2015 (ver. 3.0 June 2017): U. S. Geological Survey data release, https://doi.org/10.5066/F7TQ5ZPR. 
https://www.sciencebase.gov/catalog/item/5841f97ee4b04fc80e518d9f

Schraga, T.S. &amp;amp;amp;amp;amp;amp; Cloern, J.E. Water Quality Measurements in San Francisco Bay by the U.S.Geological Survey, 1969-2015. Scientific Data 4:170098 doi:10.1038/sdata.2017.98 (2017).
https://www.nature.com/articles/sdata201798
DOI: 10.5258/soton/d2816
title: Dataset supporting the publication "Design of integrated silicon waveguides for Raman-enhanced four-wave mixing in the telecom band"

description: Dataset supporting the publication: 
Shiyu Sun, Goran Z. Mashanovich, and Anna C. Peacock, "Design of integrated silicon waveguides for Raman-enhanced four-wave mixing in the telecom band," Opt. Express 32, 8715-8722 (2024) https://doi.org/10.1364/OE.509992

The data includes two excel files: data for paper.xlsx and dispersion data.xlsx. 
-Data for paper.xlsx: contains the conversion efficiency and Stokes output power for different etch dpeth, width of rib waveguide;
-Dispersion data.xlsx: contains second order dispersion parameters for different waveguide structures.
Dispersion parameters were calculated by COMSOL.

Related projects:
Chinese Scholarship Council(CSC); Engineering and Physical Sciences Research Council (EPSRC) (EP/P000940/1); High Value Photonic Manufacturing (EP/N00762X/1)
DOI: 10.5281/zenodo.10468082
title: Model output for: "Freshwater input from glacier melt outside Greenland alters modeled northern high-latitude ocean circulation"

description: NEMO-ANHA4 and OGGM model output files used in the article: "Freshwater input from glacier melt outside Greenland alters modeled northern high-latitude ocean circulation".

 

halfsolid.zip and noOGGM.zip contain output of the runs called halfsolid and noOGGM in the article. output_data_OGGM.zip contains the output files of OGGM runs.
DOI: 10.13026/c2c30j
title: The Sleep-EDF Database

description: This version is obsolete but will remain available to support ongoing work.
DOI: 10.15468/dl.t4pkfb
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Armenia",
 "TaxonKey is Beta L."
 ]
}

 The dataset includes 355 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087130-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.916167
title: Noah-MP simulated surface energy fluxes and temperature for a generic crop, early covering crops (ECC) and late covering crops (LCC) for Kraichgau region, southwest Germany

description: The site under study is the agricultural field belonging to the farm "Katharinentalerhof". The field is located north of the city of Pforzheim (48.920N, 8.700E). The central research site is a part of the Kraichgau region, southwest Germany. Simulations were performed for a generic crop, early covering crops (ECC) and late covering crops (LCC). We also considered different ECC-LCC ratios. Additionally, we tested the performance of the Noah-MP on latent heat flux (LE) data measured with the Eddy Covariance (EC) technique. For the simulation with Noah-MP, we used measured GVF and LAI data. The USGS land use dataset was used. The vegetation type index was set to 2 (Dryland cropland and Pasture) and soil type index to 4 (Silt loam). The model was forced with half-hourly weather data (wind speed, wind direction, temperature, humidity, pressure, precipitation, downwelling longwave and shortwave radiation) measured from 2011 to 2012. Simulations were initialized with a spin up period of one year (2011) and run with a time step of 1800 seconds.
DOI: 10.17632/5rp9fghzs9.1
title: Dataset. Changes in water quality between network and households. A study of drinking water quality in rural communities of Cundinamarca, Colombia.

description: This dataset contains comprehensive information related to water quality assessment in rural communities located in the Sabana Centro province of Cundinamarca, Colombia. The data includes various parameters measured during the sampling period between April and November 2022. These parameters encompass physical, chemical, and microbiological aspects of water quality, providing valuable insights into the overall water quality status in the study areas. The dataset comprises measurements taken from multiple sampling points, including household taps, filtered water, and boiled water samples. Each entry in the dataset represents a specific measurement and is associated with its corresponding location within the study communities. The dataset serves as a valuable resource for understanding the variations in water quality and the potential risks associated with water consumption in these rural areas.
DOI: 10.18126/82fx-q319
title: In-Situ MCT of Loaded Parachute Textiles: MIL-C-7020 T.III and MIL-C-44378 T.II
DOI: 10.18126/k5r2-32iu
title: AFRL AM Modeling Challenge Series: Challenge 4 Data Package
DOI: 10.18434/mds2-3088
title: Data for manuscript: Scalable and Robust Beam Shaping Using Apodized Fish-bone Grating Couplers
DOI: 10.21335/nmdc-1657305299
title: IMR bottom trawl data 1980-2017

description: The dataset includes bottom trawl stations from the Institute of Marine Research in Norway from 1980 to 2017.
DOI: 10.48786/edbt.2022.07
title: LMKG: Learned Models for Cardinality Estimation in Knowledge Graphs
DOI: 10.5258/soton/d2678
title: Dataset for Temperature-tunable UV generation using an Alexandrite laser and PPLN waveguides

description: Dataset supporting an article "Temperature-tunable UV generation using an Alexandrite laser and PPLN waveguides". doi: https://doi.org/10.1364/OE.495219 Data includes laser power, laser and nonlinear crystal temperatures and laser spectra used in the publication. The data includes details on the collection and generation of the data for the above publication. All data are in OriginPro files. This project has been related to the following funding projects: Innovate UK (10001664, 50414); Engineering and Physical Sciences Research Council (EP/T00097X/1, EP/P027644/1); Royal Academy of Engineering Research Chair (RCSRF1718639).
DOI: 10.5281/zenodo.10246499
title: Quantum Software Design Patterns Detection for Qiskit and QASM circuits
DOI: 10.5281/zenodo.10782689
title: Supplementary data to "Radiative forcing and equivalent effective chlorine due to hydrochlorofluorocarbons peaked in 2021"

description: README for Supplementary data to “Radiative forcing and equivalent effective chlorine due to hydrochlorofluorocarbons peaked in 2021”

 

This repository contains 4 folders:

1) agage: contains the inputs to the 12-box model and the derived monthly and annual mole fractions (global and semi-hemispheric) using measurements from the AGAGE network.

2) noaa: contains the inputs to the 12-box model and the derived monthly and annual mole fractions (global and semi-hemispheric) using measurements from the NOAA network.

3) vollmer: contains the inputs to the 12-box model and the derived monthly and annual mole fractions (global and semi-hemispheric) using measurements from the measurements published in Vollmer et al. (2021).

4) Projections: contains a csv file with the merged mole fractions (i.e., mean) from the various networks and the projected quantities.

 

The 12-box model and the method used to quantify global mean mole fractions are available via GitHub (https://github.com/mrghg/py12box (last accessed 5 March 2024) and https://github.com/mrghg/py12box_invert (last accessed 5 March 2024)) and Zenodo (https://doi.org/10.5281/zenodo.6857447 and https://doi.org/10.5281/zenodo.6857794).

 

AGAGE data are also available at http://agage.mit.edu/data/agage-data (last accessed 5 March 2024) and https://data.ess-dive.lbl.gov/  (current dataset https://doi.org/10.15485/1998580) and newer data can be made available upon request. The most recent NOAA atmospheric observations are available at https://gml.noaa.gov/aftp/data/hats/hcfcs/ (last accessed 5 March 2023). 

 

References:

Vollmer, M. K. et al. Unexpected nascent atmospheric emissions of three ozone-depleting hydrochlorofluorocarbons. Proc Natl Acad Sci USA 118, e2010914118 (2021).
DOI: 10.5281/zenodo.11120918
title: Iodine density and contrast enhanced attenuation value of neck nodes

description: Dataset of iodine concentration and contrast enhanced attenuation value in neck node
DOI: 10.5281/zenodo.8219509
title: Simulated Slidequakes, v1.1

description: Datafiles and scripts for using the SlidequakesMercuryDPM software (Arran, 2023) to reproduce the simulations and movies of the article Simulated slidequakes: Insights from DEM simulations into the high-frequency seismic signal generated by geophysical granular flows (Arran et al., 2024).

A static version of the repository at https://gitlab.com/M_Arran/simulated-slidequakes, containing derived data, scripts, and interactive notebooks to reproduce the analyses of the article Simulated slidequakes: Insights from DEM simulations into the high-frequency seismic signal generated by geophysical granular flows (Arran et al., 2024), and to link the properties of a granular flow to those of the seismogenic forces it exerts on its base.
DOI: 10.5281/zenodo.8347473
title: Room-temperature structure of glucose isomerase by fixed-target pink-beam serial synchrotron crystallography

description: Title: Room-temperature structure of glucose isomerase by fixed-target pink-beam serial synchrotron crystallography Data: Hit images Depositors: Yongsam Kim and Ki Hyun Nam Synchrotron: Pohang Light Source II Beamline: 1C Technique: Fixed-target pink-beam serial synchrotron crystallography
DOI: 10.5281/zenodo.8354296
title: Room-temperature structure of lysozyme by fixed-target pink-beam serial synchrotron crystallography

description: Title: Room-temperature structure of lysozyme by fixed-target pink-beam serial synchrotron crystallography Data: Hit images Depositors: Yongsam Kim and Ki Hyun Nam Synchrotron: Pohang Light Source II Beamline: 1C Technique: Fixed-target pink-beam serial synchrotron crystallography
DOI: 10.5517/ccdc.csd.cc2434zd
title: CCDC 1969243: Experimental Crystal Structure Determination

description: Related Article: Anna D. Peters, George F. S. Whitehead, Simon J. Webb|2019|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6080/k05h7d60
title: Simulation results from full scale and rationally reduced network
                 models of the isolated hippocampal CA1 subfield in rat
title: CRCNS.org sim-1

description: The data contains results from all simulations included in the publication Bezaire et al. (2015).
DOI: 10.6084/m9.figshare.22117847
title: trans(73-74).dat

description: discretized dipole moments of pentahelicene
DOI: 10.6084/m9.figshare.24464356
title: datafile.zip

description: Data obtained from simulation
DOI: 10.6084/m9.figshare.24886548
title: Supplementary Material for: Molecular characterization and genetic subclassification comparison of diffuse large B-cell lymphoma (DLBCL) – real-life experience with 74 cases

description: Introduction: Diffuse large B-cell lymphoma (DLBCL) is a heterogeneous entity. Lately, several algorithms achieving therapeutically and prognostically relevant DLBCL subclassification have been published.

Methods: A cohort of 74 routine DLBCL cases was broadly characterized by immunohistochemistry (IHC), fluorescence in situ hybridization (FISH) of the BCL2, BCL6 and MYC loci, and comprehensive high throughput sequencing (HTS). Based on the genetic alterations found, cases were reclassified using two probabilistic tools – LymphGen and Two-step classifier, allowing for comparison of the two models.

Results: Hans and Tally's overall IHC-based subclassification success rate was 96% and 82%, respectively. HTS and FISH data allowed the LymphGen algorithm to successfully classify 11/55 cases, (1 – BN2, 7 – EZB, 1 – MCD, and 2 – genetically composite EZB/N1). The total subclassification rate was 20%. On the other hand, the Two-step classifier categorized 36/55 cases, with 65.5% success (9 – BN2, 12 – EZB, 9 – MCD, 2 – N1, and 4 – ST2). Clinical correlations highlighted MCD as an aggressive subtype associated with higher relapse and mortality.

Conclusions: The Two-step algorithm has a better success rate at subclassifying DLBCL cases based on genetic differences. Further improvement of the classifiers is required to increase the number of classifiable cases and thus prove their applicability in routine diagnostics.