cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17605/osf.io/rv7jt
title: High-throughput sequencing provides insight into manipulated soil fungal community structure and diversity during temperate forest restoration

description: The process of community assembly in fungal communities is poorly understood and may have important implications for restoration.
However, there is a shortage of data describing fungal community composition at various stages of restoration. This
study describes how microbial inoculation with field-collected soils or a commercial inoculum influenced fungal communities
during temperate tree restoration. We utilized Illumina Mi-Seq sequencing technology to examine fungal community structure
in the rhizosphere soils of trees at the conclusion of one growing season. Inoculation treatment was found to be a significant
determinant of fungal community structure in one of our three experimental tree species (Liriodendron tulipifera). We also
found a marginally significant influence of inoculation method on fungal community structure in the rhizosphere soils of Quercus
rubra, an ectomycorrhizal tree species. Importantly, within these taxa, the use of commercial inocula, while failing to lead to
detectable abundances of the inoculated taxa, strongly influenced the resulting fungal community structure after 4 months in
the field, relative to control trees that received no such inoculation. We observed lower abundances of Hebeloma, a potentially
important ectomycorrhizal genera, in Quercus trees receiving the commercial inoculum compared with control trees; thus, the
commercial inoculum might have unexpected consequences for fungal community assembly. Such unintended legacy effects of
soil inoculation should be considered in ecological restoration. Furthermore, by taking a time series approach to sampling,
high-throughput sequencing approaches could be used to test the principles of ecological assembly theory, including legacy
effects of taxa no longer detectable in the community.
DOI: 10.15468/dl.gtrkhb
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alcantarea glaziouana",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 103 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054257-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17787915
title: Discovery of NIRF theranostic probes targeting amyloid-β and cholinesterases in Alzheimer's disease models

description: This dataset contains the computational files associated with the structural and molecular dynamics studies of I-43 reported in the manuscript. The upload includes:



Molecular dynamics trajectories of the I-43/4ey7 complex (initial and final configurations) from MD run 1 and MD run 2.MD simulation files detailing the structural evolution of I-43 bound to the Aβ fibril (PDB ID: 4ey7). The dataset includes the initial and final configuration, and representative trajectory snapshots. These files support the stability assessment and binding-mode analysis presented in the study.

Output-Geometry-Coordinates-of_I-43-compound’s-isomers.docxOptimized geometries and atomic coordinates of all relevant isomeric forms of the I-43 molecule obtained from quantum chemical calculations. Each set of coordinates corresponds to the energy-minimized structure used for subsequent docking and MD simulations.
DOI: 10.5281/zenodo.17787913
title: Discovery of NIRF theranostic probes targeting amyloid-β and cholinesterases in Alzheimer's disease models

description: This dataset contains the computational files associated with the structural and molecular dynamics studies of I-43 reported in the manuscript. The upload includes:



Molecular dynamics trajectories of the I-43/4ey7 complex (initial and final configurations) from MD run 1 and MD run 2.MD simulation files detailing the structural evolution of I-43 bound to the Aβ fibril (PDB ID: 4ey7). The dataset includes the initial and final configuration, and representative trajectory snapshots. These files support the stability assessment and binding-mode analysis presented in the study.

Output-Geometry-Coordinates-of_I-43-compound’s-isomers.docxOptimized geometries and atomic coordinates of all relevant isomeric forms of the I-43 molecule obtained from quantum chemical calculations. Each set of coordinates corresponds to the energy-minimized structure used for subsequent docking and MD simulations.
DOI: 10.34740/kaggle/dsv/14171960
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.8p5s58
title: Occurrence Download

description: A dataset containing 62035 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "CoordinateUncertaintyInMeters 0.0-1000000.0",
 "Country is one of (Mexico, United States of America, Canada)",
 "TaxonKey is Passerculus sandwichensis"
 ]
}

 The dataset includes 62035 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054256-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e47rvj
title: Occurrence Download

description: A dataset containing 1451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Pinus tabuliformis"
 ]
}

 The dataset includes 1451 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054258-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30890852
title: <b>Con</b><b>tinuously Tunable Multistability in DNA Replication Networks</b>

description: Multistable systems, ideally, could stabilize at any desired, switchable state within a continuous spectrum. However, conventional systems, constrained by signal-mediated mutual activation or inhibition, are limited to a finite set of discrete steady states. Here, we propose a rational framework for achieving continuously tunable multistability through reversible displacement reaction-mediated competition between positive autoregulatory DNA polymerization/nicking modules. This framework harnesses the chemical energy of dNTP hydrolysis to suppress spontaneous interconversion between modules for stabilizing at any target state along a continuous compositional gradient. With unparalleled tunability, the framework enables continuous, orthogonal state transitions and concentration-adaptive molecular memory in response to transient stimuli. Moreover, the single-stranded DNAs generated by polymerization/nicking reactions can be customized with predefined structures and functions, enabling continuously multistable control over downstream processes, e.g., biocatalysis and RNA transcription, while maintaining multistability. This framework establishes a versatile and robust platform for developing chemical and material systems with continuously tunable multistability.
DOI: 10.6084/m9.figshare.30890852.v1
title: <b>Con</b><b>tinuously Tunable Multistability in DNA Replication Networks</b>

description: Multistable systems, ideally, could stabilize at any desired, switchable state within a continuous spectrum. However, conventional systems, constrained by signal-mediated mutual activation or inhibition, are limited to a finite set of discrete steady states. Here, we propose a rational framework for achieving continuously tunable multistability through reversible displacement reaction-mediated competition between positive autoregulatory DNA polymerization/nicking modules. This framework harnesses the chemical energy of dNTP hydrolysis to suppress spontaneous interconversion between modules for stabilizing at any target state along a continuous compositional gradient. With unparalleled tunability, the framework enables continuous, orthogonal state transitions and concentration-adaptive molecular memory in response to transient stimuli. Moreover, the single-stranded DNAs generated by polymerization/nicking reactions can be customized with predefined structures and functions, enabling continuously multistable control over downstream processes, e.g., biocatalysis and RNA transcription, while maintaining multistability. This framework establishes a versatile and robust platform for developing chemical and material systems with continuously tunable multistability.
DOI: 10.15468/dl.brgk3s
title: Occurrence Download

description: A dataset containing 433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudois nayaur"
 ]
}

 The dataset includes 433 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054260-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2heqjk
title: Occurrence Download

description: A dataset containing 147446 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Trinidad and Tobago",
 "OccurrenceStatus is Present",
 "Year 2024-2025"
 ]
}

 The dataset includes 147446 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054251-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/s0aq-ys24
title: NBDL-HSJ5FY0HN5JDX1
DOI: 10.25919/s1zv-7h08
title: NBDL-HSJ5FY3BJ5VZW4
DOI: 10.25919/0721-y724
title: NBDL-HSJ5FY1YQ5X74X
DOI: 10.25919/81gw-br81
title: NBDL-HSJ5FY33J5V8B4
DOI: 10.25919/yt4t-c967
title: NBDL-HSJ5FY1XN5X2DH
DOI: 10.25919/z98j-7r95
title: NBDL-HSJ5FY1WK5X3R5
DOI: 10.25919/y0xg-xk97
title: NBDL-HK3PNASMGRR586
DOI: 10.5281/zenodo.17191358
title: date
title: Skp2 Deubiquitination and Stabilization by KIF18B Activate Aerobic Glycolysis to Promote Osteosarcoma Progression)
DOI: 10.5281/zenodo.17204392
title: date
title: Skp2 Deubiquitination and Stabilization by KIF18B Activate Aerobic Glycolysis to Promote Osteosarcoma Progression)
DOI: 10.15468/dl.vr67zj
title: Occurrence Download

description: A dataset containing 415506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Material sample",
 "Country is Pakistan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1979-2025"
 ]
}

 The dataset includes 415506 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054259-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8syba
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Gazella subgutturosa"
 ]
}

 The dataset includes 115 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054261-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30891230
title: supplementary materials, code, and data

description: Supplementary materials, code and data for the manuscript entitled “The Mathematical Laws of Causality: A First-Principles Framework for Multi-Dimensional Causal Inference.
DOI: 10.6084/m9.figshare.30891230.v1
title: supplementary materials, code, and data

description: Supplementary materials, code and data for the manuscript entitled “The Mathematical Laws of Causality: A First-Principles Framework for Multi-Dimensional Causal Inference.
DOI: 10.6084/m9.figshare.30891260
title: Phenotypic and genotypic analysis of pediatric nephronophthisis patients with different levels of proteinuria

description: While nephronophthisis (NPHP) classically manifests as mild tubular proteinuria, emerging evidence reports nephrotic-range proteinuria with edema. This study aims to explore the phenotypes and genotypes of pediatric NPHP patients with different levels of proteinuria. Twenty-one children with NPHP were recruited into this single-center cohort. They were divided into two groups according to proteinuria levels: group A (mild proteinuria, <i>n</i> = 12) and group B (moderate-to-heavy proteinuria, <i>n</i> = 9). The median age at symptom onset was 7.4 years (IQR 2.4–12.8). By the end of follow-up, 20 patients had progressed to ESRD at a median age of 9.8 years (IQR 5.8–12.9). Patients in group B exhibited significantly higher prevalence of family histories, hypertension, edema, and higher urine microalbumin-to-α1-microglobulin (MA/A1M) ratios. Genetic testing identified <i>NPHP1</i> mutations as the most prevalent (61.9%), followed by <i>TTC21B</i> variants (19.0%). However, <i>TTC21B</i> mutations were more commonly found in group B (3/4, 75.0%) with one homozygous mutation and two compound heterozygous mutations. Five novel mutations of NPHP genes were identified. Further literature review of patients with <i>TTC21B</i> gene mutations revealed that the P209L variant was almost present in all North African/European patients, while the C518R heterozygous mutation occurred in 72.7% of Asian patients. In conclusion, NPHP remains a diagnosis in patients presenting with moderate-to-heavy proteinuria, particularly when accompanied by characteristic features including positive family history, hypertension, and edema, with <i>TTC21B</i> emerging as the predominant pathogenic gene in this clinical subgroup.
DOI: 10.6084/m9.figshare.30891260.v1
title: Phenotypic and genotypic analysis of pediatric nephronophthisis patients with different levels of proteinuria

description: While nephronophthisis (NPHP) classically manifests as mild tubular proteinuria, emerging evidence reports nephrotic-range proteinuria with edema. This study aims to explore the phenotypes and genotypes of pediatric NPHP patients with different levels of proteinuria. Twenty-one children with NPHP were recruited into this single-center cohort. They were divided into two groups according to proteinuria levels: group A (mild proteinuria, <i>n</i> = 12) and group B (moderate-to-heavy proteinuria, <i>n</i> = 9). The median age at symptom onset was 7.4 years (IQR 2.4–12.8). By the end of follow-up, 20 patients had progressed to ESRD at a median age of 9.8 years (IQR 5.8–12.9). Patients in group B exhibited significantly higher prevalence of family histories, hypertension, edema, and higher urine microalbumin-to-α1-microglobulin (MA/A1M) ratios. Genetic testing identified <i>NPHP1</i> mutations as the most prevalent (61.9%), followed by <i>TTC21B</i> variants (19.0%). However, <i>TTC21B</i> mutations were more commonly found in group B (3/4, 75.0%) with one homozygous mutation and two compound heterozygous mutations. Five novel mutations of NPHP genes were identified. Further literature review of patients with <i>TTC21B</i> gene mutations revealed that the P209L variant was almost present in all North African/European patients, while the C518R heterozygous mutation occurred in 72.7% of Asian patients. In conclusion, NPHP remains a diagnosis in patients presenting with moderate-to-heavy proteinuria, particularly when accompanied by characteristic features including positive family history, hypertension, and edema, with <i>TTC21B</i> emerging as the predominant pathogenic gene in this clinical subgroup.
DOI: 10.15468/dl.pw7k28
title: Occurrence Download

description: A dataset containing 37911 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Ursus arctos"
 ]
}

 The dataset includes 37911 records from 216 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054262-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhvk5j
title: Occurrence Download

description: A dataset containing 780 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parablennius zvonimiri (Kolombatovic, 1892)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 780 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002453-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jxngp
title: Occurrence Download

description: A dataset containing 6465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-76.1132702000000023 43.0332586000000035, -76.1132702000000023 43.0350136300000017, -76.1132702000000023 43.0372366699999986, -76.1132702000000023 43.0393426999999988, -76.1132702000000023 43.0410977299999971, -76.1132702000000023 43.0427357599999993, -76.1132702000000023 43.0449588000000034, -76.1106982999999957 43.0449588000000034, -76.1085941000000048 43.0449588000000034, -76.1050871000000058 43.0449588000000034, -76.1023983999999984 43.0449588000000034, -76.1002941999999933 43.0449588000000034, -76.0985407000000009 43.0449588000000034, -76.0957350999999989 43.0449588000000034, -76.0933971000000042 43.0449588000000034, -76.0900069999999999 43.0449588000000034, -76.0879027999999948 43.0449588000000034, -76.0853309999999965 43.0449588000000034, -76.0832268000000056 43.0449588000000034, -76.0797198000000066 43.0449588000000034, -76.0774985999999984 43.0449588000000034, -76.0774985999999984 43.0434377699999970, -76.0774985999999984 43.0413317399999968, -76.0774985999999984 43.0394597100000027, -76.0774985999999984 43.0365346600000009, -76.0774985999999984 43.0343116199999969, -76.0774985999999984 43.0332586000000035, -76.0793690999999939 43.0332586000000035, -76.0820578000000012 43.0332586000000035, -76.0847464999999943 43.0332586000000035, -76.0862661999999972 43.0332586000000035, -76.0883704000000023 43.0332586000000035, -76.0911760000000044 43.0332586000000035, -76.0930464000000057 43.0332586000000035, -76.0960857999999973 43.0332586000000035, -76.0983068999999972 43.0332586000000035, -76.1006449000000060 43.0332586000000035, -76.1040349999999961 43.0332586000000035, -76.1057885000000027 43.0332586000000035, -76.1088278999999943 43.0332586000000035, -76.1108152000000047 43.0332586000000035, -76.1132702000000023 43.0332586000000035))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 6465 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096351-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mmt8h
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Nassarius fraterculus (Dunker, 1860)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 235 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001365-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32evb1
title: Occurrence Download

description: A dataset containing 364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Fitzroya cupressoides I.M.Johnst.",
 "DecimalLatitude is greater than or equal to -90",
 "DecimalLongitude is greater than or equal to -180"
 ]
}

 The dataset includes 364 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028039-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y0fxnz
title: Occurrence Download

description: A dataset containing 10853886 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Continent is Africa",
 "Continent is South America"
 ]
 },
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 10853886 records from 603 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043889-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wh9umf
title: Occurrence Download

description: A dataset containing 540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((118.35238 30.92893,153.64762 30.92893,153.64762 45.07107,118.35238 45.07107,118.35238 30.92893))",
 "HasCoordinate is true",
 "TaxonKey is Nassarius festivus (Powys, 1835)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 540 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001367-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stu6va
title: Occurrence Download

description: A dataset containing 8930 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amorpha fruticosa L."
 ]
}

 The dataset includes 8930 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0143594-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.