cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20025751
title: Broad and fine-scale threats on threatened Brazilian freshwater fish: variability across hydrographic regions and taxonomic groups

description: Abstract: Anthropogenic environmental changes are the main cause of species extinction during the Holocene. Species have been exposed to major source of threats, such as habitat loss and fragmentation, pollution, introduced species, and harvesting, many of which are derived from specific anthropogenic activities, such as urbanization, agriculture, and damming (i.e. fine-scale threats). However, the importance of these threats on the species conservation status in a given region depends on the type of impacts they are exposed to and the susceptibility of species to these impacts. In this study, we used a database of threatened Brazilian freshwater fish species to test whether the major source of threats and the specific anthropogenic impacts to species vary across hydrographic regions and taxonomic groups. Our results showed that habitat loss is a ubiquitous major threat jeopardizing the conservation status of the Brazilian fish species. However, different fine-scale threats mediate this process across hydrographic regions and taxonomic groups. The combination of impacts from agriculture, deforestation, and urbanization affects most of the threatened species in the basins of the Northeast, South, and Southeast, including the species of the most threatened order, the Cyprinodontiformes. Damming is the main human activity affecting threatened species of Siluriformes, Characiformes, Gymnotiformes, and Cichliformes, especially in northern basins (Amazon and Tocantins-Araguaia). Therefore, we found that specific fine-scale threats influencing threatened species vary across hydrographic regions and taxonomic groups, probably due to geographic variability in the incidence of human activities and differential niche requirements and vulnerability of species to these activities.
DOI: 10.6084/m9.figshare.20025751.v1
title: Broad and fine-scale threats on threatened Brazilian freshwater fish: variability across hydrographic regions and taxonomic groups

description: Abstract: Anthropogenic environmental changes are the main cause of species extinction during the Holocene. Species have been exposed to major source of threats, such as habitat loss and fragmentation, pollution, introduced species, and harvesting, many of which are derived from specific anthropogenic activities, such as urbanization, agriculture, and damming (i.e. fine-scale threats). However, the importance of these threats on the species conservation status in a given region depends on the type of impacts they are exposed to and the susceptibility of species to these impacts. In this study, we used a database of threatened Brazilian freshwater fish species to test whether the major source of threats and the specific anthropogenic impacts to species vary across hydrographic regions and taxonomic groups. Our results showed that habitat loss is a ubiquitous major threat jeopardizing the conservation status of the Brazilian fish species. However, different fine-scale threats mediate this process across hydrographic regions and taxonomic groups. The combination of impacts from agriculture, deforestation, and urbanization affects most of the threatened species in the basins of the Northeast, South, and Southeast, including the species of the most threatened order, the Cyprinodontiformes. Damming is the main human activity affecting threatened species of Siluriformes, Characiformes, Gymnotiformes, and Cichliformes, especially in northern basins (Amazon and Tocantins-Araguaia). Therefore, we found that specific fine-scale threats influencing threatened species vary across hydrographic regions and taxonomic groups, probably due to geographic variability in the incidence of human activities and differential niche requirements and vulnerability of species to these activities.
DOI: 10.6084/m9.figshare.20025749.v1
title: Ecological and growth patterns of the longsnout seahorse Hippocampus reidi inferred by mark-recapture techniques in a tropical estuary

description: Abstract: The population structure of the longsnout seahorse Hippocampus reidi (Ginsburg 1933) was evaluated in an estuarine system in northeastern Brazil. A total of 425 captures were performed in the Vaza-Barris estuary and 232 individuals were marked with Visible Implant Fluorescent Elastomers. The population was estimated to be composed of 428 fish. The von Bertalanffy growth curve shows a steeper growth during the first months of life, up to about 17 months, and stabilization after 16 cm and 27 months of age. The hereby study indicates that the Vaza-Barris estuary is home to resident populations of longsnout seahorses. Moreover, these populations use mangrove roots as the main substrate for attachment and present well-defined ecological characteristics, such as habitat fidelity and highly structured social organization.
DOI: 10.6084/m9.figshare.20025749
title: Ecological and growth patterns of the longsnout seahorse Hippocampus reidi inferred by mark-recapture techniques in a tropical estuary

description: Abstract: The population structure of the longsnout seahorse Hippocampus reidi (Ginsburg 1933) was evaluated in an estuarine system in northeastern Brazil. A total of 425 captures were performed in the Vaza-Barris estuary and 232 individuals were marked with Visible Implant Fluorescent Elastomers. The population was estimated to be composed of 428 fish. The von Bertalanffy growth curve shows a steeper growth during the first months of life, up to about 17 months, and stabilization after 16 cm and 27 months of age. The hereby study indicates that the Vaza-Barris estuary is home to resident populations of longsnout seahorses. Moreover, these populations use mangrove roots as the main substrate for attachment and present well-defined ecological characteristics, such as habitat fidelity and highly structured social organization.
DOI: 10.6084/m9.figshare.20025754
title: Functional Feeding Group composition and attributes: evaluation of freshwater ecosystems in Atlantic Forest, Brazil

description: Abstract: Benthic macroinvertebrates Functional Feeding Group (FFG) have been used to determine aquatic assemblage dynamics and as a biomonitoring tool. The main goals of this study were to assess the effects of stream variables on the abundance and richness of FFGs and evaluate ecosystem attributes (FFG ratios) as a tool to assess ecological conditions of Atlantic Rainforest streams. We sampled 146 sites with different impairment conditions in Rio de Janeiro, Brazil. Richness was significantly different among impairment conditions for all FFGs. Mixed-effect models show that aquatic macroinvertebrate FFGs differed in their responses to abiotic variables for abundance and richness. Also, they were reduced in the impaired sites when compared to intermediate and reference sites. The FFG ratio indicated significant differences along the impairment gradient. The FFG ratio analysis was shown to be a fast and cheap tool that can be used for monitoring aquatic ecosystems in the Atlantic Forest biome. However, further studies are required to calibrate the method specifically for the Atlantic Forest region.
DOI: 10.6084/m9.figshare.20025754.v1
title: Functional Feeding Group composition and attributes: evaluation of freshwater ecosystems in Atlantic Forest, Brazil

description: Abstract: Benthic macroinvertebrates Functional Feeding Group (FFG) have been used to determine aquatic assemblage dynamics and as a biomonitoring tool. The main goals of this study were to assess the effects of stream variables on the abundance and richness of FFGs and evaluate ecosystem attributes (FFG ratios) as a tool to assess ecological conditions of Atlantic Rainforest streams. We sampled 146 sites with different impairment conditions in Rio de Janeiro, Brazil. Richness was significantly different among impairment conditions for all FFGs. Mixed-effect models show that aquatic macroinvertebrate FFGs differed in their responses to abiotic variables for abundance and richness. Also, they were reduced in the impaired sites when compared to intermediate and reference sites. The FFG ratio indicated significant differences along the impairment gradient. The FFG ratio analysis was shown to be a fast and cheap tool that can be used for monitoring aquatic ecosystems in the Atlantic Forest biome. However, further studies are required to calibrate the method specifically for the Atlantic Forest region.
DOI: 10.6084/m9.figshare.20025755
title: Gastrotrichs and tardigrades in a remnant of Atlantic Forest (Serra do Japi, SP, Brazil)

description: Abstract: Serra do Japi, located in the southeast of São Paulo State, is considered a priority area for conservation, as it houses original Atlantic Forest cover remains. Despite the significant number of studies about vertebrates and invertebrates that were carried out in this region, the meiofauna biodiversity is completely unknown. Thus, the present study aimed to investigate for the first time freshwater Gastrotricha and limnoterrestrial Tardigrada in Serra do Japi Biological Reserve. Samples of sediments, periphyton and floating vegetation in reservoirs and natural lagoons, and mosses growing on native and non-native tree trunks were collected in May 2019. At least five gastrotrichs morphotypes were identified and three of them were formally described: Chaetonotus acanthocephalus, C. dadayi (first record in Brazil), and Heterolepidoderma mariae (first record outside the type locality). In regards to tardigrades, twelve morphotypes were identified and four of them were formally described: Pseudechiniscus juanitae, Minibiotus cf. acontistus, Echiniscus dreyfusi and Itaquascon umbellinae (last two species reported for the first time outside the type locality). This study reinforces that meiofaunal diversity and distribution have been underestimated, even in one of the five largest hotspots in the world.
DOI: 10.6084/m9.figshare.20025755.v1
title: Gastrotrichs and tardigrades in a remnant of Atlantic Forest (Serra do Japi, SP, Brazil)

description: Abstract: Serra do Japi, located in the southeast of São Paulo State, is considered a priority area for conservation, as it houses original Atlantic Forest cover remains. Despite the significant number of studies about vertebrates and invertebrates that were carried out in this region, the meiofauna biodiversity is completely unknown. Thus, the present study aimed to investigate for the first time freshwater Gastrotricha and limnoterrestrial Tardigrada in Serra do Japi Biological Reserve. Samples of sediments, periphyton and floating vegetation in reservoirs and natural lagoons, and mosses growing on native and non-native tree trunks were collected in May 2019. At least five gastrotrichs morphotypes were identified and three of them were formally described: Chaetonotus acanthocephalus, C. dadayi (first record in Brazil), and Heterolepidoderma mariae (first record outside the type locality). In regards to tardigrades, twelve morphotypes were identified and four of them were formally described: Pseudechiniscus juanitae, Minibiotus cf. acontistus, Echiniscus dreyfusi and Itaquascon umbellinae (last two species reported for the first time outside the type locality). This study reinforces that meiofaunal diversity and distribution have been underestimated, even in one of the five largest hotspots in the world.
DOI: 10.6084/m9.figshare.20016170.v1
title: SNP raw.xlsx

description: We identify the polymorphisms of 7 SNPs (rs57526673, rs4961, rs12503220, rs2239728, rs6433, rs3802230 and rs11781082) from 2 Genes (ADD1 and CYP11B2) in Chinese Han and Mongolia populations. This is the raw data of the exported data, presenting the genotype of these SNPs.
DOI: 10.6084/m9.figshare.20025503
title: tagSNP Haplotype data

description: This file contains the tagSNP haplotype association among these 7 SNPs from 2 genes (CYP11B2 and ADD1) based on 800 human blood samples from Chinese Han and Mongolia population
DOI: 10.6084/m9.figshare.20016170
title: SNP raw.xlsx

description: We identify the polymorphisms of 7 SNPs (rs57526673, rs4961, rs12503220, rs2239728, rs6433, rs3802230 and rs11781082) from 2 Genes (ADD1 and CYP11B2) in Chinese Han and Mongolia populations. This is the raw data of the exported data, presenting the genotype of these SNPs.
DOI: 10.6084/m9.figshare.20025503.v1
title: tagSNP Haplotype data

description: This file contains the tagSNP haplotype association among these 7 SNPs from 2 genes (CYP11B2 and ADD1) based on 800 human blood samples from Chinese Han and Mongolia population
DOI: 10.6084/m9.figshare.20025758
title: From the headwaters to the Iguassu Falls: Inventory of the ichthyofauna in the Iguassu River basin shows increasing percentages of nonnative species

description: Abstract: Knowledge of the ichthyofauna of a hydrographic basin is the minimum necessary condition for the implementation of any measures for the exploration, management or preservation of water and fishing resources. Despite its relevance, the number of fish species across the Iguassu River basin is still uncertain. Thus, the objective of this study was to compile the fish species that occur in the extensive stretch of the basin above the Iguassu Falls. In addition, we recorded the level of threat of extinction for native species, the origin of nonnative species, and their main vectors of introduction. To achieve this goal, a survey was carried out through consultations with ichthyological collections as well as online databases. Also, a literature review was conducted using the search platforms Thomson Reuters, SciELO and Elsevier’s ScienceDirect to locate all articles published by March 2020 that addressed the topic “ichthyofauna in the Iguassu River basin”. The survey compiled a total of 133 fish species distributed in nine orders, 29 families and 72 genera. Seventy-nine fish species were recorded that occur throughout the entire length of the basin, 119 species that occur in the hydrographic units of the middle and lower Iguassu River (40 exclusive) and 93 species that occur in the hydrographic unit of the upper Iguassu River (14 exclusive). The endemism rate shown here for the Iguassu River basin (approximately 69%) contrasts with the 40 nonnative fish species recorded (approximately 30% of the total species in the basin). Successive impoundments, reductions in habitat quality and the increase in the number of nonnative species are the main threats to native species, especially to the endemic species; approximately 20% of these species were listed in some category of threat of extinction. We emphasize that constant monitoring of ichthyofauna is necessary to discover putatively undescribed species, as well as for the application of management strategies to mitigate the negative effects and promote the control of the spread of nonnative species.
DOI: 10.6084/m9.figshare.20025758.v1
title: From the headwaters to the Iguassu Falls: Inventory of the ichthyofauna in the Iguassu River basin shows increasing percentages of nonnative species

description: Abstract: Knowledge of the ichthyofauna of a hydrographic basin is the minimum necessary condition for the implementation of any measures for the exploration, management or preservation of water and fishing resources. Despite its relevance, the number of fish species across the Iguassu River basin is still uncertain. Thus, the objective of this study was to compile the fish species that occur in the extensive stretch of the basin above the Iguassu Falls. In addition, we recorded the level of threat of extinction for native species, the origin of nonnative species, and their main vectors of introduction. To achieve this goal, a survey was carried out through consultations with ichthyological collections as well as online databases. Also, a literature review was conducted using the search platforms Thomson Reuters, SciELO and Elsevier’s ScienceDirect to locate all articles published by March 2020 that addressed the topic “ichthyofauna in the Iguassu River basin”. The survey compiled a total of 133 fish species distributed in nine orders, 29 families and 72 genera. Seventy-nine fish species were recorded that occur throughout the entire length of the basin, 119 species that occur in the hydrographic units of the middle and lower Iguassu River (40 exclusive) and 93 species that occur in the hydrographic unit of the upper Iguassu River (14 exclusive). The endemism rate shown here for the Iguassu River basin (approximately 69%) contrasts with the 40 nonnative fish species recorded (approximately 30% of the total species in the basin). Successive impoundments, reductions in habitat quality and the increase in the number of nonnative species are the main threats to native species, especially to the endemic species; approximately 20% of these species were listed in some category of threat of extinction. We emphasize that constant monitoring of ichthyofauna is necessary to discover putatively undescribed species, as well as for the application of management strategies to mitigate the negative effects and promote the control of the spread of nonnative species.
DOI: 10.6084/m9.figshare.20025772
title: Lizards and snakes of Refúgio de Vida Silvestre Matas do Siriji, an Atlantic Forest hotspot of the Pernambuco Endemism Center, Northeastern Brazil

description: Abstract: The Atlantic Forest north of the São Francisco River, known as the Pernambuco Endemism Center (PEC), comprises small, poorly-known and, consequently, highly threatened forest remnants, such as Refúgio de Vida Silvestre (RVS) Matas do Siriji, a montane forest located in the municipality of São Vicente Férrer, state of Pernambuco, Northeast Brazil. We provide the results of the first inventory of the squamate fauna of the region with comments on the conservation status of some species, comparisons with other locations in Northeast Brazil and a brief discussion of biogeography. Time-constrained transects, pit-fall traps, occasional encounters and third-party records registered 18 lizard species and 25 snake species, with the rarefaction curve of the former tending to stability. The RVS Matas do Siriji possesses 39.81 % of the lizard and snake species known for the state of de Pernambuco, being the third richest area in species in the State, with a composition similar to that of other areas within PEC. Based on the lists of SEMAS, ICMBio and IUCN, some of the registered species are considered vulnerable to extinction while others have yet to be evaluated. The RVS Matas do Siriji includes a rich, threatened and underestimated fauna of squamate reptiles, indicating that more restrictive protection measures must be adopted in this Conservation Unit.
DOI: 10.6084/m9.figshare.20025772.v1
title: Lizards and snakes of Refúgio de Vida Silvestre Matas do Siriji, an Atlantic Forest hotspot of the Pernambuco Endemism Center, Northeastern Brazil

description: Abstract: The Atlantic Forest north of the São Francisco River, known as the Pernambuco Endemism Center (PEC), comprises small, poorly-known and, consequently, highly threatened forest remnants, such as Refúgio de Vida Silvestre (RVS) Matas do Siriji, a montane forest located in the municipality of São Vicente Férrer, state of Pernambuco, Northeast Brazil. We provide the results of the first inventory of the squamate fauna of the region with comments on the conservation status of some species, comparisons with other locations in Northeast Brazil and a brief discussion of biogeography. Time-constrained transects, pit-fall traps, occasional encounters and third-party records registered 18 lizard species and 25 snake species, with the rarefaction curve of the former tending to stability. The RVS Matas do Siriji possesses 39.81 % of the lizard and snake species known for the state of de Pernambuco, being the third richest area in species in the State, with a composition similar to that of other areas within PEC. Based on the lists of SEMAS, ICMBio and IUCN, some of the registered species are considered vulnerable to extinction while others have yet to be evaluated. The RVS Matas do Siriji includes a rich, threatened and underestimated fauna of squamate reptiles, indicating that more restrictive protection measures must be adopted in this Conservation Unit.
DOI: 10.6084/m9.figshare.20025773
title: Lizards from the Alto Sertão region of Sergipe state, northeastern Brazil

description: Abstract We present the first detailed inventory of the lizard fauna of Alto Sertão region, west of Sergipe state, based on three field expeditions carried out by the authors and specimens deposited at the Herpetological Collection of Universidade Federal de Sergipe. The three inventories were carried out between 2010 and 2016, in the municipalities of Canindé de São Francisco, Poço Redondo, Monte Alegre de Sergipe, Nossa Senhora da Glória, and Porto da Folha. In total, we sampled 9,485 lizards of 19 species (10 families) of which 10 are new records for the study area. The most abundant species were Ameivula ocellifera, Tropidurus hispidus and T. semitaeniatus. Thirteen species were considered as widely distributed in Caatinga, five presented a relictual distribution and one was exotic. We suggest that future research focus mainly on non-sampled areas and should prioritize the municipalities of Gararu, Nossa Senhora da Glória and Nossa Senhora de Lourdes since they are localities with little or no sampling records.
DOI: 10.6084/m9.figshare.20025773.v1
title: Lizards from the Alto Sertão region of Sergipe state, northeastern Brazil

description: Abstract We present the first detailed inventory of the lizard fauna of Alto Sertão region, west of Sergipe state, based on three field expeditions carried out by the authors and specimens deposited at the Herpetological Collection of Universidade Federal de Sergipe. The three inventories were carried out between 2010 and 2016, in the municipalities of Canindé de São Francisco, Poço Redondo, Monte Alegre de Sergipe, Nossa Senhora da Glória, and Porto da Folha. In total, we sampled 9,485 lizards of 19 species (10 families) of which 10 are new records for the study area. The most abundant species were Ameivula ocellifera, Tropidurus hispidus and T. semitaeniatus. Thirteen species were considered as widely distributed in Caatinga, five presented a relictual distribution and one was exotic. We suggest that future research focus mainly on non-sampled areas and should prioritize the municipalities of Gararu, Nossa Senhora da Glória and Nossa Senhora de Lourdes since they are localities with little or no sampling records.