cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29212960
title: Comprehensive analysis of mRNA and miRNA expression profiles in follicular development in quail

description: 1. Ovarian follicle development is a key determinant of egg production in quail which is regulated by a dynamic and stage-specific genetic program. However, most follicle-related genes and miRNAs have not yet been identified in quail. 2. This study applied transcriptome sequencing to dissect mRNA and miRNA expression patterns in quail ovarian follicles at distinct developmental stages: the pre-selection (SYF), the post-selection (F5) and the pre-ovulatory follicles (F1) in egg-laying birds. Comparative analyses identified 362 differentially-expressed mRNAs and 13 miRNAs in the F1 <i>vs</i>. F5 comparison, 549 and 72 in the F5 <i>vs</i>. SYF comparison and 1833 and 55 in the F1 <i>vs</i>. SYF comparison, respectively. 3. Significant differentially-expressed mRNAs implicated in follicle development included <i>VCAN</i>, <i>FGFR3</i>, <i>ALDH1A1, NR0B1,ZP2</i> and <i>SMOC1</i>. Other significant miRNAs were represented by ga-miR-460b-5p, gga-miR-1552-5p, gga-miR-125b-5p, gga-miR-135a-5p, gga-miR-122-5p, gga-miR-29b-3p and ggga-miR-138-1-3p. 4. Enrichment analyses using GO and KEGG databases highlighted the influence of the extracellular matrix (ECM), cell adhesion molecules (CAMs), TGF-β and calcium signalling pathways and the steroid synthesis pathway on follicular development. 5. Additionally, the miRNA-mRNA interaction network pinpointed the regulatory roles of specific differentially expressed miRNAs (DE miRNAs), including gga-miR-1306-5p, gga-miR-133a-3p, gga-miR-133c-3p, gga-miR-214, gga-miR-214b-5p and gga-miR-34a-5p.
DOI: 10.6084/m9.figshare.25321317.v1
title: A scoping review of artificial intelligence in medical education: BEME Guide No. 84

description: Artificial Intelligence (AI) is rapidly transforming healthcare, and there is a critical need for a nuanced understanding of how AI is reshaping teaching, learning, and educational practice in medical education. This review aimed to map the literature regarding AI applications in medical education, core areas of findings, potential candidates for formal systematic review and gaps for future research. This rapid scoping review, conducted over 16 weeks, employed Arksey and O’Malley’s framework and adhered to STORIES and BEME guidelines. A systematic and comprehensive search across PubMed/MEDLINE, EMBASE, and MedEdPublish was conducted without date or language restrictions. Publications included in the review spanned undergraduate, graduate, and continuing medical education, encompassing both original studies and perspective pieces. Data were charted by multiple author pairs and synthesized into various thematic maps and charts, ensuring a broad and detailed representation of the current landscape. The review synthesized 278 publications, with a majority (68%) from North American and European regions. The studies covered diverse AI applications in medical education, such as AI for admissions, teaching, assessment, and clinical reasoning. The review highlighted AI's varied roles, from augmenting traditional educational methods to introducing innovative practices, and underscores the urgent need for ethical guidelines in AI's application in medical education. The current literature has been charted. The findings underscore the need for ongoing research to explore uncharted areas and address potential risks associated with AI use in medical education. This work serves as a foundational resource for educators, policymakers, and researchers in navigating AI's evolving role in medical education. A framework to support future high utility reporting is proposed, the FACETS framework.
DOI: 10.6084/m9.figshare.28582736.v1
title: Multi-omics uncover acute stress vulnerability through gut-hypothalamic communication in ducks

description: 1. The avian gut hosts a complex and dynamic microbial ecosystem, which is essential for regulating host organ function. However, the relationship between the gut microbiota and the hypothalamic axis in acute stress vulnerability in ducks remains unclear. 2. This study investigated how the gut microbiota affects microbial metabolism and the host stress response by comparing hypothalamic neurotransmitter availability, microbial composition and co-metabolites generated by both the microbiota and hypothalamus in ducks exhibiting the lowest active avoidance (LAA) and highest active avoidance (HAA) behaviour. 3. The HAA group experienced a significant increase in the availability of arginine, histidine, glutamine, norepinephrine, L-tyrosine and melatonin during acute stress in the hypothalamus, compared to that in the LAA group. The 16S rRNA sequencing revealed significant differences in the gut microbiota composition based on acute stress vulnerabilities. 4. Both caecal and hypothalamic metabolomic analyses identified 71 metabolites altered in caecal content and 95 in the hypothalamus. There was significant enrichment in pathways such as the cGMP-PKG signalling, dopaminergic synapse and endocrine resistance. 5. Correlation analyses demonstrated that certain co-metabolites, including 1,3-dicyclohexylurea, 1-deoxyvaleric acid, 2-amino-2-methyl-1,3-propanediol, 3-chloroaniline, methenamine, N4-acetylcytidine-triphosphate and traumatin, may play a role in the gut microbiota-hypothalamic axis. 6. The results suggested that the gut microbiome influenced acute stress responses. This provided a basis for understanding gut-hypothalamic communication and its impact on behaviour in ducks.
DOI: 10.6084/m9.figshare.28581727
title: Population genomics and transcriptomics identify patterns of selection in two Liangshan chicken breeds

description: 1. The global diversity of domestic chicken breeds, each exhibiting unique and specialised traits, offers a compelling context to explore how selection influences genetic variation patterns. China, with its myriad local chicken breeds, contributes significantly to this diversity. 2. This study presents a population genome overview of genetic variations in 35 domestic chickens encompassing two distinct breeds from the Liangshan Prefecture in Sichuan Province. Through comparative genomic analysis of 17 red jungle fowls (RJF), genes associated with artificial selection in the Yanying and Luning chickens were identified. Further transcriptome comparison between these two breeds with Lohmann layers identified expression profiles of genes under selection. 3. In total, 1,006 and 982 selected genes were identified in Yanying and Luning chickens, respectively, with 326 shared genes. These genes were primarily involved in immunity, energy metabolism, body size maintenance, and fertility. Transcriptomic analysis revealed tissue-specific gene expression, with Yanying showing immunity-related gene upregulation in ovaries compared to Lohmann chickens. 4. These findings provide valuable insights into the genetic basis of breed-specific traits, offering potential targets for future breeding programmes to enhance chicken productivity and adaptability.
DOI: 10.6084/m9.figshare.28581727.v1
title: Population genomics and transcriptomics identify patterns of selection in two Liangshan chicken breeds

description: 1. The global diversity of domestic chicken breeds, each exhibiting unique and specialised traits, offers a compelling context to explore how selection influences genetic variation patterns. China, with its myriad local chicken breeds, contributes significantly to this diversity. 2. This study presents a population genome overview of genetic variations in 35 domestic chickens encompassing two distinct breeds from the Liangshan Prefecture in Sichuan Province. Through comparative genomic analysis of 17 red jungle fowls (RJF), genes associated with artificial selection in the Yanying and Luning chickens were identified. Further transcriptome comparison between these two breeds with Lohmann layers identified expression profiles of genes under selection. 3. In total, 1,006 and 982 selected genes were identified in Yanying and Luning chickens, respectively, with 326 shared genes. These genes were primarily involved in immunity, energy metabolism, body size maintenance, and fertility. Transcriptomic analysis revealed tissue-specific gene expression, with Yanying showing immunity-related gene upregulation in ovaries compared to Lohmann chickens. 4. These findings provide valuable insights into the genetic basis of breed-specific traits, offering potential targets for future breeding programmes to enhance chicken productivity and adaptability.
DOI: 10.6084/m9.figshare.28582736
title: Multi-omics uncover acute stress vulnerability through gut-hypothalamic communication in ducks

description: 1. The avian gut hosts a complex and dynamic microbial ecosystem, which is essential for regulating host organ function. However, the relationship between the gut microbiota and the hypothalamic axis in acute stress vulnerability in ducks remains unclear. 2. This study investigated how the gut microbiota affects microbial metabolism and the host stress response by comparing hypothalamic neurotransmitter availability, microbial composition and co-metabolites generated by both the microbiota and hypothalamus in ducks exhibiting the lowest active avoidance (LAA) and highest active avoidance (HAA) behaviour. 3. The HAA group experienced a significant increase in the availability of arginine, histidine, glutamine, norepinephrine, L-tyrosine and melatonin during acute stress in the hypothalamus, compared to that in the LAA group. The 16S rRNA sequencing revealed significant differences in the gut microbiota composition based on acute stress vulnerabilities. 4. Both caecal and hypothalamic metabolomic analyses identified 71 metabolites altered in caecal content and 95 in the hypothalamus. There was significant enrichment in pathways such as the cGMP-PKG signalling, dopaminergic synapse and endocrine resistance. 5. Correlation analyses demonstrated that certain co-metabolites, including 1,3-dicyclohexylurea, 1-deoxyvaleric acid, 2-amino-2-methyl-1,3-propanediol, 3-chloroaniline, methenamine, N4-acetylcytidine-triphosphate and traumatin, may play a role in the gut microbiota-hypothalamic axis. 6. The results suggested that the gut microbiome influenced acute stress responses. This provided a basis for understanding gut-hypothalamic communication and its impact on behaviour in ducks.
DOI: 10.15468/dl.t9vewf
title: Occurrence Download

description: A dataset containing 28857 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Heracleum sosnowskyi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 28857 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022138-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqby23
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ricinus communis",
 "Country is Costa Rica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 242 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022139-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t67u8c
title: Occurrence Download

description: A dataset containing 27808 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysimachia linum-stellatum"
 ]
}

 The dataset includes 27808 records from 341 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022136-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhzjam
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ricinus communis",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 56 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022140-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mebadp
title: Occurrence Download

description: A dataset containing 43676 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium campestre"
 ]
}

 The dataset includes 43676 records from 1065 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022133-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sj435c
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aloe sharoniae N.R.Crouch & Gideon F.Sm."
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0386981-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zdvtt
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mussidia nigrivenella Ragonot, 1888"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228297-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3bfco
title: Occurrence Download

description: A dataset containing 13038262 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Turdus merula Linnaeus, 1758",
 "TaxonKey is Dama dama (Linnaeus, 1758)",
 "TaxonKey is Delphinus delphis Linnaeus, 1758",
 "TaxonKey is Raphus cucullatus (Linnaeus, 1758)",
 "TaxonKey is Grus grus (Linnaeus, 1758)",
 "TaxonKey is Corvus corone Linnaeus, 1758",
 "TaxonKey is Turdus pilaris Linnaeus, 1758",
 "TaxonKey is Bos taurus Linnaeus, 1758",
 "TaxonKey is Columba livia J.F.Gmelin, 1789",
 "TaxonKey is Lepus europaeus Pallas, 1778",
 "TaxonKey is Gonepteryx rhamni (Linnaeus, 1758)",
 "TaxonKey is Sciurus vulgaris Linnaeus, 1758",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)",
 "TaxonKey is Canis lupus Linnaeus, 1758",
 "TaxonKey is Lutra lutra (Linnaeus, 1758)",
 "TaxonKey is Hyla arborea (Linnaeus, 1758)",
 "TaxonKey is Milvus milvus (Linnaeus, 1758)",
 "TaxonKey is Vanellus vanellus (Linnaeus, 1758)",
 "TaxonKey is Carcinus maenas (Linnaeus, 1758)",
 "TaxonKey is Halichoerus grypus (Fabricius, 1791)",
 "TaxonKey is Rupicapra rupicapra (Linnaeus, 1758)",
 "TaxonKey is Lucilia sericata (Meigen, 1826)",
 "TaxonKey is Gomphus vulgatissimus (Linnaeus, 1758)"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13038262 records from 2127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010073-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-01.3018038/2551387
title: Data for EMSL Project 60579 from January 2024
DOI: 10.25582/data.2024-01.3018040/2551388
title: Data for EMSL Project 60579 from January 2024
DOI: 10.25582/data.2024-01.3018042/2551389
title: Data for EMSL Project 60579 from January 2024
DOI: 10.25582/data.2024-01.3018043/2551390
title: Data for EMSL Project 60579 from January 2024
DOI: 10.25582/data.2024-01.3018045/2551391
title: Data for EMSL Project 60579 from January 2024
DOI: 10.15468/dl.xokkkh
title: Occurrence Download

description: A dataset containing 8498492 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Branta canadensis (Linnaeus, 1758), Brassica juncea (L.) Czern., Brassica napus L., Brassica nigra (L.) W.D.J.Koch, Brassica oleracea L., Brassica rapa L.)"
 ]
}

 The dataset includes 8498492 records from 1459 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041590-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dh9qxy
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001714-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjqdum
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013807-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.385h24
title: Occurrence Download

description: A dataset containing 54171234 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 54171234 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219038-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.elxvl9
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011056-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggfcsj
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016232-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o8lfmj
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013764-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxkhet
title: Occurrence Download

description: A dataset containing 8286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Haematopus palliatus Temminck, 1820"
 ]
}

 The dataset includes 8286 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071662-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exu2by
title: Occurrence Download

description: A dataset containing 54171234 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 54171234 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219197-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shyyza
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003000-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zonnks
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Wolffia globosa (Roxb.) Hartog & Plas",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 74 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000794-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txdi1q
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013845-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9gp84e
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Trachusa maai (Mavromoustakis, 1953)"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219070-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjyzkg
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002927-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.