cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1fc39p2n/1
title: data-microsat-JourdanPineau-2011

description: This is the genotypes of all individuals used in this study.
DOI: 10.5061/dryad.70/8
title: Cerchio and Tucker Data Matrix: Conservative-1
DOI: 10.5061/dryad.70/9
title: Cerchio and Tucker Data Matrix: Conservative-2
DOI: 10.5061/dryad.705/1
title: Kress et al Data Set

description: atpB, rbcL, 18S, and morphology for Zingiberales.
DOI: 10.5061/dryad.708/1
title: Salter Data Set
DOI: 10.5061/dryad.712/1
title: Mammal body mass and BMR measurements
DOI: 10.5061/dryad.716/1
title: 16S PAUP Data Set
DOI: 10.5061/dryad.716/2
title: Crandall and Fitzpatrick Appendix
DOI: 10.5061/dryad.720/1
title: Siddall Appendix
DOI: 10.5061/dryad.8913/17
title: Partial Mantel: Sulawesi male morph distance

description: Sulawesi Limnonectes male morphological distances for partial mantel test
DOI: 10.5061/dryad.8913/18
title: Partial Mantel: Sulawesi mtDNA genetic distance

description: Sulawesi Limnonectes mitochondrial DNA genetic distances for partial mantel test
DOI: 10.5061/dryad.8913/19
title: Partial Mantel: Sulawesi RAG1 genetic distance

description: Sulawesi Limnonectes RAG1 genetic distances for partial mantel test
DOI: 10.5061/dryad.8q3p913p/1
title: Song_data

description: This dataset contains measurements of song traits (means from 3 measurements per individual) for 3 generations of experimental crosses.
DOI: 10.5061/dryad.8q3p913p/2
title: QTL_data

description: This dataset contains information on song traits and genotypes at microsatellite and candidate gene markers for males from F3 generation of experimental crossess.
DOI: 10.5061/dryad.9060/2
title: zoop_chla_averages_emergent

description: Time-averages (averaged over days 25-108) of data found in the file zoop_chla_time_series.txt, including total chlorophyll a concentration and densities of three zooplankton species (Daphnia pulex, Ceriodaphnia reticulata, and Scapholeberis mucronata). Also included are emergent measures: temporal variability of total zooplankton abundance, total summed covariances among zooplankton species, and time-averaged zooplankton Shannon diversity (measured over days 24-108).
DOI: 10.5061/dryad.h5q66/2
title: rapid_cold_hardening
DOI: 10.5061/dryad.jc86t/2
title: Dianne_et_al_Predation_tests
DOI: 10.5061/dryad.1257/1
title: Genetic diversity of Anolis krugi
DOI: 10.5061/dryad.1fc39p2n/2
title: data-experiment-JourdanPineau-2011

description: These are the larval period and size at metamorphosis of individuals reared in the lab.
DOI: 10.5061/dryad.723/1
title: PAUP Data Set
DOI: 10.5061/dryad.723/2
title: PHYLIP Data Set
DOI: 10.5061/dryad.727/1
title: Waggoner Appendix
DOI: 10.5061/dryad.731/1
title: Emerson Data Set
DOI: 10.5061/dryad.734/1
title: Thorpe et al Data Set
DOI: 10.5061/dryad.737/1
title: Wray Data Set

description: Larval and embryonic morphology data matrix
DOI: 10.5061/dryad.740/1
title: Livezey Data Set
DOI: 10.5061/dryad.8174/1
title: LultimaHaplotypes

description: A nexus file containing the haplotype sequences for Ledella ultima
DOI: 10.5061/dryad.8281/1
title: CLones_3_MJB

description: Multilocus Genotypes of fungus, with size of clones in bins of 3 m
DOI: 10.5061/dryad.8281/2
title: IT_Act_MJB

description: Phylip file of Actin gene sequence. No clone correction.
DOI: 10.5061/dryad.8281/3
title: IT_BT_MJB

description: Phylip file of Beta-tubulin sequence, no clone-correction
DOI: 10.5061/dryad.8281/4
title: IT_RPB1_MJB

description: Phylip file of Onnia tomentosa, individual sequence of carpophores
DOI: 10.5061/dryad.8677/1
title: HostExpansion_dryadentry

description: Microsatellite profiles for lodgepole pine and jack pine collected in BC, AB, SK, ON and MN used to develop a method of reliably identifying pure species and their hybrids. These data were used to document the host-range expansion of mountain pine beetle into jack pine. Included with the 11 microsatellie profiles are the location names (corresponding to the manuscript) and the geographic coordinates (lat/long).
DOI: 10.5061/dryad.8913/20
title: Partial Mantel: Sulawesi sympatry distance

description: Sulawesi Limnonectes sympatry distances for partial mantel test
DOI: 10.5061/dryad.9100/1
title: Mol Ecol Sequences Culicoides

description: Individual by individual data on each Culicoides spp. including location, parasitised status, DNA haplotype and Genbank accession numbers.
DOI: 10.5061/dryad.9100/2
title: Mol Ecol sequences Haemosporidios

description: Blood parasite haplotypes isolated in this study and Genbank accessions for the DNA sequences.
DOI: 10.5061/dryad.jc86t/1
title: Dianne_et_al_Refuge_use_experiments
DOI: 10.5061/dryad.0d7t0/2
title: Supp_Figure_1

description: Large scale version of Text-Figure 7, with sample and taxon names included. Figure shows two-way cluster analysis plot of US Gulf Coast pollen and spore data.
DOI: 10.5061/dryad.0d7t0/3
title: Supp_Tab2Fig2

description: Details of Holocene pollen data used in the analysis. Supplement Table 2 gives location, age and citation details for the Holocene lake cores used. Supplement Figure 2 shows the locations of the core sites on maps of North and South America. All data are from the literature, and most was downloaded from the Neotoma database (http://www.neotomadb.org/).
DOI: 10.5061/dryad.1m8r2/1
title: chick_sex

description: Data to estimate brood sex ratio at fledging (BSR, see equation S1 in Supporting Information). Variables: BROOD - brood ID, MALE - number of male chicks in the brood, FEMALE - number of female chicks in the brood, MAHATCH - hatching date (number of days since 1 March), AGE - brood age at capture. BSR was estimated at the middle of the four periods: 49, 72, 95, 117.5 days since 1 March.
DOI: 10.5061/dryad.2f4g2h90/1
title: ZD_RK_CostOfCooperation_data

description: This file contains three sheets. Sheet#1 contains all raw data related to the metapopulation analyses presented in Figures 2a, 3a, and 4a of the paper. Sheet#2 contains all raw data related to the individual clone analyses presented in figures 2b, 3b, and 4b of the paper. Sheet#3 contains the raw data related to the classification of clones presented in figure 5 of the paper.
DOI: 10.5061/dryad.585t4/1
title: BMJ open Access MHRA Field Safety Notices 2006_2010

description: Medical Device alert: Medical Device Alerts (MDAs) were introduced on 1 January 2003, to replace the previous types of safety warnings (Hazard notice, Safety notice, Device alert, Advice notice and Pacemaker technical note. Medical Device Alerts (MDAs) are the MHRA's prime means of communicating safety information to medical device users in health and social care. Each MDA is designated either for ‘Immediate action’ or ‘Action’. MDAs may also be used to provide updated information.
DOI: 10.5061/dryad.743/1
title: 5S Long (for 5S Short)
DOI: 10.5061/dryad.743/10
title: ITS (for cpDNA)
DOI: 10.5061/dryad.743/11
title: 5S Short (for 5S Long)
DOI: 10.5061/dryad.743/12
title: 5S Long (for cpDNA)
DOI: 10.5061/dryad.743/13
title: 5s Long and cpDNA
DOI: 10.5061/dryad.743/14
title: cpDNA (for 5S Long)
DOI: 10.5061/dryad.743/15
title: 5S Long (for ITS)
DOI: 10.5061/dryad.743/16
title: 5S Long and ITS
DOI: 10.5061/dryad.743/17
title: ITS (for 5S Long)
DOI: 10.5061/dryad.743/18
title: 5S Short (for cpDNA)
DOI: 10.5061/dryad.7881/1
title: UnigeneAlignments
DOI: 10.5061/dryad.7rp566h7/1
title: data-forStats

description: Data used for statistical analyses. Fitness calculations described in paper.
DOI: 10.5061/dryad.7rp566h7/2
title: data-hostDensity

description: Raw data (cfu/ml) for assays of host population density.
DOI: 10.5061/dryad.8684/1
title: body size data (dry weight, wing area, Cell size and cell number)

description: The data was collected as described in the material and methods section of the paper.The body weight data gives average weight per fly per line while the data for the remaining three traits is per vial per line and is log transformed. The column heading line is equivalent to the replicate population described in the paper.
DOI: 10.5061/dryad.8f3bk/2
title: ITS.ETS.trees.fig_3

description: The resulting 50% majority rule consensus trees (with and without branch length data) from the analysis of the data in "ITS.ETS.alignment.fig_3.nex". The tree with branch lengths was used for figure 3.
DOI: 10.5061/dryad.c0q0h/2
title: SEEco wildtype outcrossing

description: Outcrossing rates were calculated from male frequency counts in the wildtype populations taken every fourth generation during experimental evolution.
DOI: 10.5061/dryad.c7ss600f/1
title: Flowering status data for Dryad

description: These are individual-level data on the flowering success of experimental individuals (Recombinant Inbred Lines and parental lines) outplanted into Colorado and Montana field gardens in September 2008 and 2009.  In this file, site indicates the common garden where an individual was planted.  Cohort refers to the year in which we assessed fitness (growing season of 2009 or 2010).  Family identifies the Recombinant Inbred Line or Parental Line family.  Block indicates the block into which an individual was planted in each garden.  Flowered indicates whether an individual flowered (1) or not (0).  We've included two columns for the genotype at the nFT QTL.  The first includes heterozygotes, and the second excludes them.  Finally %CO is the proportion of the genome with Colorado alleles, excluding the nFT region.  Please see the manuscript for additional information.
DOI: 10.5061/dryad.k175g/1
title: 15955692MEC-11-0018.R2
DOI: 10.5061/dryad.p13s6/1
title: SIM1

description: Functional innovation of polymorphic modules in a colony of Bugula flabellata: Whilst the autozooids feed by a ring of ciliated tentacles, the avicularia are active deterrents to invertebrate epibionts and here have trapped the appendages of a corophiid gammaridean amphipod.
DOI: 10.5061/dryad.p13s6/2
title: SIM2

description: This movie shows the capture of a corophiid gammaridean amphipod by two bird’s-head avicularia. One avicularium has trapped an antenna whilst the second avicularium, an abdominal appendage. During its struggle to free itself, the abdominal appendage breaks off freeing the abdomen.
DOI: 10.5061/dryad.s01rg/1
title: Microsatellite Data_Paramuricea clavata

description: Microsatellite data at 6 loci for the 39 Paramuricea clavata samples studied in Mediterranean Sea
DOI: 10.5061/dryad.0d7t0/1
title: Supp_Table_1

description: Community matrix of US Gulf Coast pollen and spore data. Rows are samples, columns are taxa, data are given as taxon counts. The data are derived from sampled outcrops and sediment cores. The file was created in MS Excel 2008.
DOI: 10.6084/m9.figshare.14728324.v1
title: Additional file 16 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 16: Table S15. Specific primers of candidate gene sequences for qRT-PCR.
DOI: 10.6084/m9.figshare.14728333
title: Additional file 3 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 3: Table S2. Sequence information on the genomes of 259 rice accessions.
DOI: 10.6084/m9.figshare.14728333.v1
title: Additional file 3 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 3: Table S2. Sequence information on the genomes of 259 rice accessions.
DOI: 10.6084/m9.figshare.14728336
title: Additional file 4 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 4: Table S3. Results of filtered SNP annotation.
DOI: 10.6084/m9.figshare.14728309.v1
title: Additional file 11 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 11: Table S10. GWAS of P6 (2019) resiatance with 259 rice lines using the SNP-set generated by mapping reads to the Nipponbare.
DOI: 10.6084/m9.figshare.14728342.v1
title: Additional file 6 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 6: Table S5. GWAS of P3 (BULP) resiatance with 259 rice lines using the SNP-set generated by mapping reads to the Nipponbare.
DOI: 10.6084/m9.figshare.14728348
title: Additional file 7 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 7: Table S6. GWAS of P3 (2018) resiatance with 259 rice lines using the SNP-set generated by mapping reads to the Nipponbare.
DOI: 10.6084/m9.figshare.14728339
title: Additional file 5 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 5: Table S4. Number of SNPs in 259 rice accessiongs using the sequenced data mapped to the Nipponbare refrence genome. MAF: minor allele frequency.
DOI: 10.6084/m9.figshare.14728348.v1
title: Additional file 7 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 7: Table S6. GWAS of P3 (2018) resiatance with 259 rice lines using the SNP-set generated by mapping reads to the Nipponbare.
DOI: 10.6084/m9.figshare.14728315
title: Additional file 13 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 13: Table S12. The list of DEGs in resistant line NSIC RC154 at different inoculation times.
DOI: 10.25582/data.2021-09.2332616/2285580
title: Data for EMSL Project 51834 from September 2021
DOI: 10.6084/m9.figshare.14728312
title: Additional file 12 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 12: Table S11. Statistics of Illumina transcriptome sequencing data.
DOI: 10.6084/m9.figshare.14728315.v1
title: Additional file 13 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 13: Table S12. The list of DEGs in resistant line NSIC RC154 at different inoculation times.
DOI: 10.6084/m9.figshare.14728318
title: Additional file 14 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 14: Table S13. The list of DEGs in susceptible line CT 9737-6-1-3P-M at different inoculation times.
DOI: 10.6084/m9.figshare.14728354
title: Additional file 9 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 9: Table S8. GWAS of P6 (BULP) resiatance with 259 rice lines using the SNP-set generated by mapping reads to the Nipponbare.
DOI: 10.6084/m9.figshare.14728312.v1
title: Additional file 12 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 12: Table S11. Statistics of Illumina transcriptome sequencing data.
DOI: 10.6084/m9.figshare.14728351
title: Additional file 8 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 8: Table S7. GWAS of P3 (2019) resiatance with 259 rice lines using the SNP-set generated by mapping reads to the Nipponbare.
DOI: 10.6084/m9.figshare.14728354.v1
title: Additional file 9 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 9: Table S8. GWAS of P6 (BULP) resiatance with 259 rice lines using the SNP-set generated by mapping reads to the Nipponbare.
DOI: 10.6084/m9.figshare.14728351.v1
title: Additional file 8 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 8: Table S7. GWAS of P3 (2019) resiatance with 259 rice lines using the SNP-set generated by mapping reads to the Nipponbare.
DOI: 10.25582/data.2022-01.2417224/2285581
title: Data for EMSL Project 51834 from January 2022
DOI: 10.6084/m9.figshare.14728318.v1
title: Additional file 14 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 14: Table S13. The list of DEGs in susceptible line CT 9737-6-1-3P-M at different inoculation times.
DOI: 10.6084/m9.figshare.14728321.v1
title: Additional file 15 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 15: Table S14. The 2817 DEGs were uniquely detected in the resistance line NSIC RC154.
DOI: 10.6084/m9.figshare.14728321
title: Additional file 15 of Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.)

description: Additional file 15: Table S14. The 2817 DEGs were uniquely detected in the resistance line NSIC RC154.
DOI: 10.25582/data.2021-08.2304511/2285582
title: Data for EMSL Project 51834 from August 2021
DOI: 10.25582/data.2021-09.2322361/2285583
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-09.2330018/2285584
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2022-09.2607475/2285585
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2021-12.2399939/2285586
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2021-11.2388315/2285587
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2022-10.2621130/2285588
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-09.2330090/2285589
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2022-10.2622426/2285590
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2022-01.2417404/2285591
title: Data for EMSL Project 51834 from January 2022
DOI: 10.25582/data.2021-09.2322465/2285592
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-09.2332491/2285593
title: Data for EMSL Project 51834 from September 2021
DOI: 10.6084/m9.figshare.6864215
title: Additional file 1: of CIGene: a literature-based online resource for cancer initiation genes

description: Table S1. Details of the 177 human CIGs. (XLS 46Â kb)
DOI: 10.6084/m9.figshare.6864215.v1
title: Additional file 1: of CIGene: a literature-based online resource for cancer initiation genes

description: Table S1. Details of the 177 human CIGs. (XLS 46Â kb)
DOI: 10.25582/data.2021-12.2390552/2285594
title: Data for EMSL Project 51834 from December 2021
DOI: 10.6084/m9.figshare.6864221
title: Additional file 2: of CIGene: a literature-based online resource for cancer initiation genes

description: Table S2. Functional enrichment analysis for all 177 CIGs. (XLS 393Â kb)
DOI: 10.6084/m9.figshare.6864221.v1
title: Additional file 2: of CIGene: a literature-based online resource for cancer initiation genes

description: Table S2. Functional enrichment analysis for all 177 CIGs. (XLS 393Â kb)
DOI: 10.6084/m9.figshare.19447142
title: LncRNA LINC01270 aggravates the progression of gastric cancer through modulation of miR-326/EFNA3 axis

description: Gastric cancer (GC) is lethal malignancy, which is associated with high mortality. Long noncoding RNA LINC01270 has been identified to act as a potential oncogene in several cancers. However, its role and related regulatory mechanism in GC are yet to be illustrated. The levels of lncRNA LINC01270, miR-326, and EphrinA3 (EFNA3) were assessed by quantitative reverse transcriptase polymerase chain reaction (qRT-PCR). Cell counting kit-8 (CCK-8) and colony formation assays were applied for analyzing cell proliferation. Transwell assay was used for measuring cellular migration and invasion. Western blot analysis was employed for evaluating the protein levels. Luciferase reporter and RNA pull-down assays were utilized to verify the binding ability between LINC01270 (or EFNA3) and miR-326. Our findings indicated that LINC01270 expression was significantly up-regulated in GC tissues and cell lines. Additionally, LINC01270 knockdown attenuated GC progression through inhibiting cell proliferation, migration, and invasion. Functional experiments identified that lncRNA LINC01270 could positively regulate EFNA3 expression by serving as a competing endogenous RNA (ceRNA) for miR-326. Through rescue assays, inhibition of GC progression caused by LINC01270 suppression was found to be reversed by the application of miR-326 inhibitor or EFNA3 overexpression. Overall, our work demonstrated that lncRNA LINC01270 can accelerate cell proliferation, migration, and invasion via modulating miR-326/EFNA3 axis. These findings might implicate the potential role of lncRNA LINC01270 in GC treatment.
DOI: 10.6084/m9.figshare.19447142.v1
title: LncRNA LINC01270 aggravates the progression of gastric cancer through modulation of miR-326/EFNA3 axis

description: Gastric cancer (GC) is lethal malignancy, which is associated with high mortality. Long noncoding RNA LINC01270 has been identified to act as a potential oncogene in several cancers. However, its role and related regulatory mechanism in GC are yet to be illustrated. The levels of lncRNA LINC01270, miR-326, and EphrinA3 (EFNA3) were assessed by quantitative reverse transcriptase polymerase chain reaction (qRT-PCR). Cell counting kit-8 (CCK-8) and colony formation assays were applied for analyzing cell proliferation. Transwell assay was used for measuring cellular migration and invasion. Western blot analysis was employed for evaluating the protein levels. Luciferase reporter and RNA pull-down assays were utilized to verify the binding ability between LINC01270 (or EFNA3) and miR-326. Our findings indicated that LINC01270 expression was significantly up-regulated in GC tissues and cell lines. Additionally, LINC01270 knockdown attenuated GC progression through inhibiting cell proliferation, migration, and invasion. Functional experiments identified that lncRNA LINC01270 could positively regulate EFNA3 expression by serving as a competing endogenous RNA (ceRNA) for miR-326. Through rescue assays, inhibition of GC progression caused by LINC01270 suppression was found to be reversed by the application of miR-326 inhibitor or EFNA3 overexpression. Overall, our work demonstrated that lncRNA LINC01270 can accelerate cell proliferation, migration, and invasion via modulating miR-326/EFNA3 axis. These findings might implicate the potential role of lncRNA LINC01270 in GC treatment.
DOI: 10.25582/data.2022-04.2479067/2285595
title: Data for EMSL Project 51834 from April 2022
DOI: 10.6084/m9.figshare.6864230
title: Additional file 3: of CIGene: a literature-based online resource for cancer initiation genes

description: Table S3. Functional enrichment analysis for the 96 CIGs with identified tumor suppressor or oncogenic roles. (XLS 377Â kb)
DOI: 10.6084/m9.figshare.6864230.v1
title: Additional file 3: of CIGene: a literature-based online resource for cancer initiation genes

description: Table S3. Functional enrichment analysis for the 96 CIGs with identified tumor suppressor or oncogenic roles. (XLS 377Â kb)
DOI: 10.25582/data.2021-10.2367490/2285596
title: Data for EMSL Project 51834 from October 2021