cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/h5ff9vv5pc.1
title: Hearing physiological data and acoustic feature data of vocalizations from hearing and deaf Egyptian fruit-bats

description: This repository is a companion for the following article: 
Role of auditory feedback for vocal production learning in the Egyptian fruit-bat
by Julie E Elie, Sandra E Muroy, Daria Genzel, Tong Na, Lisa A Beyer, Donald L Swiderski, Yehoash Raphael, Michael M Yartsev.
Current Biology, 2024

In this paper we investigated how suppressing the sense of hearing would affect vocal production in the Egyptian fruit-bat. While bats are generally classified as vocal learners, which vocalizations are learned and which vocalizations are innate in their repertoire is unknown. Here we analyzed the vocal production of ten Egyptian fruit bats, five of which lost their hearing as pups. Because vocal learning necessitates the sense of hearing, vocalizations that are acquired by learning should be affected in deaf individuals. Vocalizations were recorded both by an ambient microphone and a piezo sensor (audio logger) carried by each individual, while the ten bats were freely interacting in their home environment. We show that a subset of the Egyptian fruit-bat vocal repertoire necessitates auditory feedback for normal production. Intriguingly, these affected vocalizations belong to different acoustic groups in the vocal repertoire of males and females. 

General Description of the data
The present folder contains all the code to reproduce the results of the article and its figures, including intermediary data that are saved under the folder Data. Code files are given as Matlab notebooks or Matlab scripts. Notebook are also given as PDF for convenience. Data contains both Auditory Brain Responses measurements from the ten subject bats and acoustic measures made on vocalizations from these ten subjects.
To reproduce the figures and explore the vocalization database the first step is to download the full library of bat vocalizations available under FigShare DOI: 10.6084/m9.figshare.25886023
The folder VocDataBase should be decompressed and place in the main folder of this repository.

Dependencies
The code uses several dependencies, the main ones are:
the Python library soundsig available under https://github.com/theunissenlab/BioSoundTutorial
the Matlab code for UMAP version 1.4.2 available under Mathworks file exchange: https://www.mathworks.com/matlabcentral/fileexchange/71902
the Matlab code version 1.1.0.0 for cubehelix available under Mathworks file exchange: https://www.mathworks.com/matlabcentral/fileexchange/43700-cubehelix-colormap-generator-beautiful-and-versatile

The ReadMe file contains a description of each Matlab notebook and script.
DOI: 10.17632/bmd9hppk3t.1
title: Data of compression test results of high-performance wood scrimber

description: The dataset contains the compression test results of high-performance wood scrimber. The dataset provides information on the group, dimensions, maximum load, total mass, density, and compressive strength.
DOI: 10.17632/95xhtj3wh8.1
title: LINF_360044500

description: cysteine synthase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/xft4b3cs9r.1
title: Community perception of malaria in the Colombian Pacific

description: Research video INV1829 is linked to the collection of data on the community's perception of malaria in the Colombian Pacific.
DOI: 10.17632/vxkp7v3nk3
title: Combined effects of multisensory stimulation and soft tissue therapy on procedural pain and neurodevelopment among preterm neonates

description: Does the combined effects of multisensory stimulation and soft tissue therapy helps in decreasing procedural pain and improving neuromotor outcomes among preterm neonates ? Pain outcomes PIPP-R and N-PASS were collected at 30s, 60s, 90s, and 120s immediately after painful procedure at baseline and after 5 days of intervention. Neuromotor outcomes INFANIB and Premie Neuro were collected at baseline and after 5 days of intervention.
DOI: 10.17632/vxkp7v3nk3.1
title: Combined effects of multisensory stimulation and soft tissue therapy on procedural pain and neurodevelopment among preterm neonates

description: Does the combined effects of multisensory stimulation and soft tissue therapy helps in decreasing procedural pain and improving neuromotor outcomes among preterm neonates ? Pain outcomes PIPP-R and N-PASS were collected at 30s, 60s, 90s, and 120s immediately after painful procedure at baseline and after 5 days of intervention. Neuromotor outcomes INFANIB and Premie Neuro were collected at baseline and after 5 days of intervention.
DOI: 10.17632/c2nnrrhmwk.4
title: Public diplomacy on Twitter in 2021 and 2022: The case of Hungary

description: The dataset contains the Twitter posts, posting times and types, retweet counts and favourite (like) counts of the 40 most active Hungarian state officials during the sample years of 2021 and 2022. The retrieved data includes only content published in English, as the related research focuses on digital public diplomacy directed at foreign audiences. The dataset includes the English language activities of all 40 officials between 1 January 2021 and 31 December 2022. The dataset is anonymous as it does not include the names of the selected Twitter accounts, only their respective roles in the government and/or state administration. 

New features compared to v3: 
Version 4 is designed for comparative studies and does not include the concept table available in v3.
DOI: 10.17632/hnyzzpsb6d.1
title: Supplementary data to Use of an Analytic Hierarchy Process methodology to select an agro-industrial by-product for the development of a lactic acid bacteria bioproduct

description: Data for the selection of an agro-industrial by-product as raw material to produce a forage inoculant based on lactic acid bacteria (LAB) was evaluated using the Analytic Hierarchy Process (AHP). The assessment included eight sub-criteria and was carried out by 20 experts under two different scenarios. The evaluated by-products included sugarcane molasses, sugarcane scum, fique juice, and cheese whey. This study aims for a holistic approach to bioprocesses within the framework of the circular bioeconomy, where AHP was deemed useful for complex decision-making processes in which sustainable priorities in bioproduct development are at the scope.
DOI: 10.17632/3zvyb3dswp.1
title: Calcium-dependent protein kinases CPK3/4/6/11 and 27 respond to osmotic stress and activate SnRK2s

description: The data contains the original figures of phenotypes, microscope pictures, western blots, in vitro kinase assay, in-gel kinase assay in this study.
DOI: 10.17632/xk4sdppkwy.1
title: Field study on the effects of microbial substrate application on rice straw degradation

description: The data describes the raw data collected from a field study conducted to analyse the effects of microbial substrate application on rice straw degradation. Soil analysis was conducted from pre-season and continued throughout the rice planting season.
DOI: 10.17632/7kfkbcs8h7.1
title: Unprocessed raw immunoblot gel images for HSL & JW Lee's manuscript

description: It includes unprocessed raw immunoblot gel images (8 figures) for HSL and JW Lee's manuscript.
DOI: 10.17632/hzwwyn84t6.1
title: LINF_030005100

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/6x7cb86r52.1
title: LINF_030005400

description: tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/mjyfsczghb
title: Bibliometric Data on Blue Finance Research

description: Bibliometric datasets on Blue Finance Research sourced from Scopus databases.
DOI: 10.17632/mjyfsczghb.1
title: Bibliometric Data on Blue Finance Research

description: Bibliometric datasets on Blue Finance Research sourced from Scopus databases.
DOI: 10.17632/pr4zxcjmcz.1
title: LINF_020012460

description: NAD(P)-binding domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.h9fb4h
title: Occurrence Download

description: A dataset containing 752 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amblyrhynchus cristatus venustissimus Eibl-Eibesfeldt, 1956"
 ]
}

 The dataset includes 752 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004427-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/4hpdbk9wd3.1
title: pyMCD: Python package for searching transition states via the multicoordinate driven method

description: Input and Output files of running pyMCD tested on six reactions for paper: "pyMCD: Python package for searching transition states via the multicoordinate driven method"
DOI: 10.17632/9gzfbdcmhv.1
title: Immunoblots: Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis

description: The topological state of chromosomes determines their mechanical properties, dynamics, and function. Recent work indicated that interphase chromosomes are largely free of entanglements. Here, we use Hi-C, polymer simulations and multi-contact 3C, and propose that, in contrast, mitotic chromosomes are self-entangled. We explore how a mitotic self-entangled state is converted into an unentangled interphase state during mitotic exit. Most mitotic entanglements are removed during anaphase/telophase, with remaining ones removed during early G1, in a Topoisomerase II-dependent process. Polymer models suggest a two-stage disentanglement pathway: first, decondensation of mitotic chromosomes with remaining condensin loops produces entropic forces that bias Topoisomerase II activity towards decatenation. At the second stage, the loops are released, and formation of new entanglements is prevented by lower Topoisomerase II activity, allowing the establishment of unentangled and territorial G1 chromosomes. When mitotic entanglements are not removed, in experiment and models, a normal interphase state cannot be acquired. 

Original western blot images supporting this dataset are included in this repository.
DOI: 10.17632/vrg5z73wp3.1
title: Dairy Farmers’ Intentions to Adopt Environmental Sustainability

description: The data represent the intention of dairy farmers to adopt sustainability measures on dairy farms located in the state of Paraná, Brazil.
DOI: 10.17632/bc8ypct8pr.1
title: Echinoderm occurrences in the deep northwest Pacific Ocean: families Ceratophysidae, Elpidiidae, Pourtalesiidae and Pterasteridae

description: The dataset includes records of echinoderms of the families Ceratophysidae, Elpidiidae, Pourtalesiidae and Pterasteridae in the northwest Pacific at abyssal and hadal depths (&gt;4000 m). The dataset includes both published and unpublished records. The data is given according to Darwin Core Standard.

Датасет включает абиссальные и хадальные находки иглокожих из семейств Ceratophysidae, Elpidiidae, Pourtalesiidae и Pterasteridae в Северо-Западной Пацифике на глубине свыше 4000 м. Включены как опубликованные, так и неопубликованные нахождения, определенные коллективом авторов. Датасет соответствует формату Darwin Core и может быть использован для биогеографических исследований. Работа выполнена в рамках гранта РНФ № 24-17-00321.
DOI: 10.15468/dl.v726kw
title: Occurrence Download

description: A dataset containing 16958 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Campylorhamphus trochilirostris (Lichtenstein, 1820)"
 ]
}

 The dataset includes 16958 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0375445-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2fher
title: Occurrence Download

description: A dataset containing 629 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scissirostrum dubium (Latham, 1802)"
 ]
}

 The dataset includes 629 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0399803-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zpf9se
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chlamydogobius squamigenus Larson, 1995"
 ]
}

 The dataset includes 137 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0325801-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oia6gu
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1950-2018",
 "HasCoordinate is true",
 "TaxonKey is Lycaon pictus (Temminck, 1820)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 215 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006285-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3fy5g
title: Occurrence Download

description: A dataset containing 1000134 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NIEK_NES"
 ]
}

 The dataset includes 1000134 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004606-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8cf6tf
title: Occurrence Download

description: A dataset listing the 503 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-77.36018 5.95054,-77.24726 5.95054,-77.24726 6.0692,-77.36018 6.0692,-77.36018 5.95054))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Aves",
 "TaxonKey is Psittaciformes"
 ]
 }
 ]
}

 The dataset's 503 records were derived from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0380617-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7c9k6
title: Occurrence Download

description: A dataset containing 525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Protodontia piceicola (Kühner ex Bourdot) G.W.Martin, Psathyrella cotonea (Quél.) Konrad & Maubl.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 525 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165781-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhb8wf
title: Occurrence Download

description: A dataset containing 6993 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Sorghastrum nutans (L.) Nash"
 ]
}

 The dataset includes 6993 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004591-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cezzpf
title: Occurrence Download

description: A dataset containing 463377 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fragaria vesca L."
 ]
}

 The dataset includes 463377 records from 1034 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165775-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvb979
title: Occurrence Download

description: A dataset containing 1282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-86.35476 -57.72717,-31.36653 -57.72717,-31.36653 1.74232,-86.35476 1.74232,-86.35476 -57.72717))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oligoryzomys longicaudatus (Bennett, 1832)",
 "Year 2000-2022"
 ]
}

 The dataset includes 1282 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0375446-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gt5wzz
title: Occurrence Download

description: A dataset containing 513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus Latreille, 1802"
 ]
}

 The dataset includes 513 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204026-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6zbrm
title: Occurrence Download

description: A dataset containing 1962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cedrus libani A.Rich.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1962 records from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013697-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csydqu
title: Occurrence Download

description: A dataset containing 1167 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adenocarpus hispanicus (Lam.) DC."
 ]
}

 The dataset includes 1167 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165776-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t43xa4
title: Occurrence Download

description: A dataset containing 1226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Malthodes mysticus Kiesenwetter, 1852)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 1226 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156115-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86kjsj
title: Occurrence Download

description: A dataset containing 15452721 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 15452721 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004584-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ta9cft
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sarcohyla chryses (Adler, 1965)"
 ]
}

 The dataset includes 70 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0399397-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15154990
title: APPENDIX 2 in Rediscovery of the wingless Podolian subendemic weevil Humeromima rufipes (Boheman, 1834) (Coleoptera, Curculionidae, Entiminae), a relict from the Last Glacial Maximum

description: APPENDIX 2. — Abundance of grass litter Entiminae species in Western Podolia. Abbreviations: Reproduction type (RT): P, parthenogenetic, A, amphigonic. Plots: lu, Luka; os, Osovytsia; dr, Drancha Mts.; tr, Trostianets; ku, Kuropatnyky; my, Mt. Mynych; ch, Mt. Chekhova; ka, Kasova Hora; ha, Mt. Harai; zo, 0.5 km E Kyikiv; n, total number of specimens.
PlotsTaxonRTchdrhakakulumyostrzonCathormiocerus aristatusP194–28546––369Humeromima rufipesA7113121321233Trachyphloeus parallelusP22–––––––––22Otiorhynchus raucusP99–––––––321Otiorhynchus ovatusP95–––1–––318Otiorhynchus velutinusP–2–54–22––15Trachyphloeus alternansP7––4–11––114Trachyphloeus spinimanusP9–––5–––––14Centricnemus leucogrammusA7–––5–––––12Sitona languidusA–––––7––––7Stomodes gyrosicollisP–––2––1––25Otiorhynchus chrysostictusA––––––2–2–4Cycloderes pilosulusP3–––––––––3Foucartia squamulataP––––1–1––13Otiorhynchus ligusticiP1––––1–––13Brachysomus setigerA–––2––––––2Otiorhynchus tristisP––2–––––––2Sitona lineatusA–––––2––––2Barynotus obscurusP–––––––––11Exomias chevrolatiA––––––1–––1Exomias pellucidusA––1–––––––1Phyllobius maculicornisA–––––1––––1Polydrusus inustusP–––––––––11Sitona inopsA–––––1––––1
description: Published as part of Khrapov, Denys & Yunakov, Nikolai, 2024, Rediscovery of the wingless Podolian subendemic weevil Humeromima rufipes (Boheman, 1834) (Coleoptera, Curculionidae, Entiminae), a relict from the Last Glacial Maximum, pp. 192 in Zoosystema 46 (8) on page 192, DOI: 10.5252/zoosystema2024v46a8, http://zenodo.org/record/10911154