cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22269124.v1
title: Thrombus Proteome SWATH

description: <strong>Objective: </strong>To analyse the proteomic profile of thrombi in ischemic stroke (IS) patients, in order to gain insights into disease pathogenesis. <strong>Approach and results: </strong>Thrombi from an exploratory cohort of stroke patients were obtained by thrombectomy and analysed by SWATH-MS. Unsupervised k-means clustering analysis was performed to stratify stroke patients. The proteomic profile was associated with both, the neurological function (NIHSS) and the cerebral involvement (ASPECTS) prior to thrombectomy and the clinical status of patients at 3 months using the modified Rankin scale (mRS90). In an independent cohort of 210 stroke patients, the potential role of neutrophils in stroke severity was interrogated. Proteomic analysis identified 580 proteins in thrombi, which were stratified in 4 groups: haemostasis; proteasome and neurological diseases; structural proteins; and innate immune system and neutrophils. The thrombus proteome identified 3 clusters of patients with distinctive severity, prognosis and aetiology of the stroke. A protein signature clearly distinguished atherothrombotic and cardioembolic strokes. Several proteins were significantly correlated with the severity of the stroke (NIHSS and ASPECTS). Functional proteomic analysis highlighted the prominent role of neutrophils in the stroke severity. This was in line with the association of neutrophils activation markers and count with NIHSS, ASPECTS and mRS90. <strong>Conclusions: </strong>The use of the SWATH-MS in thrombi from IS patients has provided new insights of pathways and players involved in its aetiology, severity and prognosis. The prominent role of the innate immune system identified might pave the way for the development of new biomarkers and therapeutic approaches in this disease.
DOI: 10.5281/zenodo.7674862
title: Single column 1D radiative transfer simulations for a case study of multilayer mixed-phase cloud in Punta Arena Chile

description: This data set contain the input files and output simulations from a single column 1D radiative transfer simulations using the <strong>R</strong>apid <strong>R</strong>adiative <strong>T</strong>ransfer <strong>M</strong>odel for <strong>G</strong>eneral Circulation Model (GCM) applications (RRTMG). The simulations are focused on a selected case study of multiple-layer mixed phase cloud observed in Punta Arenas Chile. The input parameters of the simulations are based on remote sensing observations, which were synergistically used with the Cloudnet and VOODOO algorithm to derive macro and microphysical properties of clouds. The atmospheric profiles of temperature, pressure, and ozone are from ERA5 (European Centre for Medium-Range Weather Forecasts (ECMWF) Re-Analysis) and values of surface albedo from CERES (Clouds and the Earth's Radiant Energy System) SYN1deg Ed. 4.1.
description: We gratefully acknowledge the Federal State of Saxony and the European Social Fund (ESF) in the framework of the programme "Projects in the fields of higher education and research" (grant no. 100339509) and ESF-REACT (grant no. 100602743), and to the Bundesministerium für Bildung und Forschung for the project "Combining MOSAiC and Satellite Observations for Radiative Closure and Climate Implications" (MOSaRiCs) – Project Number 03F0890A.
DOI: 10.5281/zenodo.7674861
title: Single column 1D radiative transfer simulations for a case study of multilayer mixed-phase cloud in Punta Arena Chile

description: This data set contain the input files and output simulations from a single column 1D radiative transfer simulations using the <strong>R</strong>apid <strong>R</strong>adiative <strong>T</strong>ransfer <strong>M</strong>odel for <strong>G</strong>eneral Circulation Model (GCM) applications (RRTMG). The simulations are focused on a selected case study of multiple-layer mixed phase cloud observed in Punta Arenas Chile. The input parameters of the simulations are based on remote sensing observations, which were synergistically used with the Cloudnet and VOODOO algorithm to derive macro and microphysical properties of clouds. The atmospheric profiles of temperature, pressure, and ozone are from ERA5 (European Centre for Medium-Range Weather Forecasts (ECMWF) Re-Analysis) and values of surface albedo from CERES (Clouds and the Earth's Radiant Energy System) SYN1deg Ed. 4.1.
description: We gratefully acknowledge the Federal State of Saxony and the European Social Fund (ESF) in the framework of the programme "Projects in the fields of higher education and research" (grant no. 100339509) and ESF-REACT (grant no. 100602743), and to the Bundesministerium für Bildung und Forschung for the project "Combining MOSAiC and Satellite Observations for Radiative Closure and Climate Implications" (MOSaRiCs) – Project Number 03F0890A.
DOI: 10.6084/m9.figshare.7660586
title: Crop type classification using a combination of optical and radar remote sensing data: a review

description: Reliable and accurate crop classification maps are an important data source for agricultural monitoring and food security assessment studies. For many years, crop type classification and monitoring were focused on single-source optical satellite data classification. With advancements in sensor technologies and processing capabilities, the potential of multi-source satellite imagery has gained increasing attention. The combination of optical and radar data is particularly promising in the context of crop type classification as it allows explaining the advantages of both sensor types with respect to e.g. vegetation structure and biochemical properties. This review article gives a comprehensive overview of studies on crop type classification using optical and radar data fusion approaches. A structured review of fusion approaches, classification strategies and potential for mapping specific crop types is provided. Finally, the partially untapped potential of radar-optical fusion approaches, research gaps and challenges for upcoming future studies are highlighted and discussed.
DOI: 10.6084/m9.figshare.7660586.v1
title: Crop type classification using a combination of optical and radar remote sensing data: a review

description: Reliable and accurate crop classification maps are an important data source for agricultural monitoring and food security assessment studies. For many years, crop type classification and monitoring were focused on single-source optical satellite data classification. With advancements in sensor technologies and processing capabilities, the potential of multi-source satellite imagery has gained increasing attention. The combination of optical and radar data is particularly promising in the context of crop type classification as it allows explaining the advantages of both sensor types with respect to e.g. vegetation structure and biochemical properties. This review article gives a comprehensive overview of studies on crop type classification using optical and radar data fusion approaches. A structured review of fusion approaches, classification strategies and potential for mapping specific crop types is provided. Finally, the partially untapped potential of radar-optical fusion approaches, research gaps and challenges for upcoming future studies are highlighted and discussed.
DOI: 10.5281/zenodo.7527609
title: Combining sIgE to multiplexed peanut components with skin prick testing improves diagnostic accuracy for peanut allergy

description: Supplemental information
DOI: 10.5281/zenodo.7583493
title: Diagnostic accuracy of the ALEX2 test in peanut sensitized children

description: Supplemental information
DOI: 10.5281/zenodo.7527608
title: Diagnostic accuracy of the ALEX2 test in peanut sensitized children

description: Supplemental information
DOI: 10.5281/zenodo.7583496
title: Diagnostic accuracy of the ALEX2 test in peanut sensitized children

description: Supplemental information
DOI: 10.5281/zenodo.7732457
title: Diagnostic accuracy of the ALEX2 test in peanut sensitized children

description: Supplemental information
DOI: 10.5281/zenodo.6641836
title: Dataset: Facile functionalization of carbon electrodes for efficient electroenzymatic hydrogen production

description: This dataset contains all of the data used to create the plots in both (i) the main article and (ii) the supporting information. The corresponding journal article can be found here: https://doi.org/10.1021/jacsau.2c00551
DOI: 10.5281/zenodo.6641837
title: Dataset: Facile functionalization of carbon electrodes for efficient electroenzymatic hydrogen production

description: This dataset contains all of the data used to create the plots in both (i) the main article and (ii) the supporting information. The corresponding journal article can be found here: https://doi.org/10.1021/jacsau.2c00551
DOI: 10.6084/m9.figshare.22240912.v1
title: Hub gene associated with prognosis in bladder cancer is the noval therapeutic target

description: The raw date of the article "Hub gene associated with prognosis in bladder cancer is the noval therapeutic target"
DOI: 10.5281/zenodo.7732358
title: Prof.

description: Dataset of a paper by Yuma Segi, Kohei Hashimoto and Makoto Mizunami entitled "Octopamine neurons mediate social learning in an insect".
DOI: 10.5281/zenodo.7732357
title: Prof.

description: Dataset of a paper by Yuma Segi, Kohei Hashimoto and Makoto Mizunami entitled "Octopamine neurons mediate social learning in an insect".
DOI: 10.25381/cput.22262230
title: Investigation of the mechanical properties of printed circuit boards for nanosatellite

description: 2021FEBEREC-STD-118
DOI: 10.25381/cput.22262230.v1
title: Investigation of the mechanical properties of printed circuit boards for nanosatellite

description: 2021FEBEREC-STD-118
DOI: 10.5281/zenodo.7568354
title: SKOS Datasets for Aligning INSEE Concepts

description: This is the list of datasets used for the alignments of INSEE concepts. The Github repository at https://github.com/MondecaLabs/INSEE-Alignment presents the procedure and the results
DOI: 10.5281/zenodo.7568355
title: SKOS Datasets for Aligning INSEE Concepts

description: This is the list of datasets used for the alignments of INSEE concepts. The Github repository at https://github.com/MondecaLabs/INSEE-Alignment presents the procedure and the results
DOI: 10.5281/zenodo.7594887
title: SKOS Datasets for Aligning INSEE Concepts

description: This is the list of datasets used for the alignments of INSEE concepts. The Github repository at https://github.com/MondecaLabs/INSEE-Alignment presents the procedure and the results
DOI: 10.5281/zenodo.7624625
title: SKOS Datasets for Aligning INSEE Concepts

description: This is the list of datasets used for the alignments of INSEE concepts. The Github repository at https://github.com/MondecaLabs/INSEE-Alignment presents the procedure and the results
DOI: 10.5281/zenodo.7732520
title: SKOS Datasets for Aligning INSEE Concepts

description: This is the list of datasets used for the alignments of INSEE concepts. The Github repository at https://github.com/MondecaLabs/INSEE-Alignment presents the procedure and the results
DOI: 10.25381/cput.22047560
title: Edu-tourism destination selection motives : focusing on study-abroad programmes at universities in the Western Cape, South Africa

description: Ethical Clearance: #2021_FBMSREC_017 <br> Dataset for the study were collected via a mixed-method approach targeting international study abroad students at the four universities in the Western Cape and key resource persons at the international offices of universities in the Western Cape. Seventy-five international students and five key resource persons participated in the study.
DOI: 10.25381/cput.22047560.v1
title: Edu-tourism destination selection motives : focusing on study-abroad programmes at universities in the Western Cape, South Africa

description: Ethical Clearance: #2021_FBMSREC_017 <br> Dataset for the study were collected via a mixed-method approach targeting international study abroad students at the four universities in the Western Cape and key resource persons at the international offices of universities in the Western Cape. Seventy-five international students and five key resource persons participated in the study.
DOI: 10.25381/cput.22227280
title: Correlative analysis between sampling direction and the mechanical properties of the friction stir welded AA5083/AA6082 dissimilar joints

description: <br> The findings of tensile, flexural, and microhardness studies performed on the friction stir welded samples AA5083-H321 and AA6082-T651 in the traverse and longitudinal directions are included in the data that is attached. <br> <br>
DOI: 10.25381/cput.22227280.v1
title: Correlative analysis between sampling direction and the mechanical properties of the friction stir welded AA5083/AA6082 dissimilar joints

description: <br> The findings of tensile, flexural, and microhardness studies performed on the friction stir welded samples AA5083-H321 and AA6082-T651 in the traverse and longitudinal directions are included in the data that is attached. <br> <br>
DOI: 10.25381/cput.22237648
title: An integrated pinch analysis framework for the development of a low carbon dioxide emissions industrial site planning which includes a fuel cell configuration

description: 2019FEREC-STD-119 <br> <br> 1. The first data set contains information of heat sources andheat sinks that was used to calculate the optimisation of energy distribution and usage. <br> 2. The second data set contains information of power sources and power sinks that was used to calculate the optimisation of power distribution and usage. <br>
DOI: 10.25381/cput.22237648.v1
title: An integrated pinch analysis framework for the development of a low carbon dioxide emissions industrial site planning which includes a fuel cell configuration

description: 2019FEREC-STD-119 <br> <br> 1. The first data set contains information of heat sources andheat sinks that was used to calculate the optimisation of energy distribution and usage. <br> 2. The second data set contains information of power sources and power sinks that was used to calculate the optimisation of power distribution and usage. <br>
DOI: 10.25381/cput.22211902
title: Solar still components temperature and weather condition

description: The weather elements were monitored by the weather station mounted at the top of the Mechanical Engineering building. Both solar stills temperature (conventional/ developed) were monitored using set of thermocouples connected to the datalogger. Ethical reference number (2019FEREC-STD-03)
DOI: 10.25381/cput.22134179
title: Developing a framework to facilitate primary school teachers' change of professional discourse about inclusive pedagogical approaches

description: EFEC 2-3/2019 Intervention programme sessions, field notes, focus group discussions, individual interviews
DOI: 10.25381/cput.22134179.v1
title: Developing a framework to facilitate primary school teachers' change of professional discourse about inclusive pedagogical approaches

description: EFEC 2-3/2019 Intervention programme sessions, field notes, focus group discussions, individual interviews
DOI: 10.6084/m9.figshare.22269277
title: 22269277 (Thrombus Proteome)

description: <strong>Objective:</strong> To analyse the proteomic profile of thrombi in ischemic stroke (IS) patients, in order to gain insights into disease pathogenesis. <strong>Approach and results:</strong> Thrombi from an exploratory cohort of stroke patients were obtained by thrombectomy and analysed by SWATH-MS. Unsupervised k-means clustering analysis was performed to stratify stroke patients. The proteomic profile was associated with both, the neurological function (NIHSS) and the cerebral involvement (ASPECTS) prior to thrombectomy and the clinical status of patients at 3 months using the modified Rankin scale (mRS90). In an independent cohort of 210 stroke patients, the potential role of neutrophils in stroke severity was interrogated. Proteomic analysis identified 580 proteins in thrombi, which were stratified in 4 groups: haemostasis; proteasome and neurological diseases; structural proteins; and innate immune system and neutrophils. The thrombus proteome identified 3 clusters of patients with distinctive severity, prognosis and aetiology of the stroke. A protein signature clearly distinguished atherothrombotic and cardioembolic strokes. Several proteins were significantly correlated with the severity of the stroke (NIHSS and ASPECTS). Functional proteomic analysis highlighted the prominent role of neutrophils in the stroke severity. This was in line with the association of neutrophils activation markers and count with NIHSS, ASPECTS and mRS90. <strong>Conclusions:</strong> The use of the SWATH-MS in thrombi from IS patients has provided new insights of pathways and players involved in its aetiology, severity and prognosis. The prominent role of the innate immune system identified might pave the way for the development of new biomarkers and therapeutic approaches in this disease.
DOI: 10.6084/m9.figshare.21960188
title: Occupational Accidents and Covid-10 Data Set.xlsx

description: Data consists of two time period which are Pre-pandemic and pandemic period. Data about the occupational accidents occurred during these periods and its featuers/spesifications have collected systematically in a university hospital in Istanbul, Turkiye.
DOI: 10.5281/zenodo.7660126
title: Probe Ranking Information - Supplementary Table 2

description: List of the 1096 genomic loci (ordered by the lowest corrected q-values) investigated in the study "<strong>Validation of differentially methylated DNA regions in precancerous colorectal lesions"</strong>. Genome coordinates are based on the GRCh37/hg19 genome assembly.
description: V2: Renaming of ageing-associated markers to ageing-specific markers
DOI: 10.5281/zenodo.7660127
title: Probe Ranking Information - Supplementary Table 2

description: List of the 1096 genomic loci (ordered by the lowest corrected q-values) investigated in the study "<strong>Validation of differentially methylated DNA regions in precancerous colorectal lesions"</strong>. Genome coordinates are based on the GRCh37/hg19 genome assembly.
DOI: 10.5281/zenodo.7715366
title: Probe Ranking Information - Supplementary Table 2

description: List of the 1096 genomic loci (ordered by the lowest corrected q-values) investigated in the study "<strong>Validation of differentially methylated DNA regions in precancerous colorectal lesions"</strong>. Genome coordinates are based on the GRCh37/hg19 genome assembly.
description: V2: Renaming of ageing-associated markers to ageing-specific markers
DOI: 10.6084/m9.figshare.22240912
title: Hub gene associated with prognosis in bladder cancer is the noval therapeutic target

description: The raw date of the article "Hub gene associated with prognosis in bladder cancer is the noval therapeutic target"
DOI: 10.6084/m9.figshare.22240912.v2
title: Hub gene associated with prognosis in bladder cancer is the noval therapeutic target

description: The raw date of the article "Hub gene associated with prognosis in bladder cancer is the noval therapeutic target"
DOI: 10.6084/m9.figshare.22240912.v3
title: Hub gene associated with prognosis in bladder cancer is the noval therapeutic target

description: The raw date of the article "Hub gene associated with prognosis in bladder cancer is the noval therapeutic target"
DOI: 10.6084/m9.figshare.22269328
title: Supplementary Material for: Patterns of Renal Dysfunction and Profile of Kidney Biopsies in Hematopoietic Stem Cell Transplant Recipients

description: Introduction: Post hematopoietic stem cell transplant (HSCT), kidney can be subjected to injury by various causes. Of these, Graft versus Host Disease (GvHD) affecting the kidney is an under-recognized entity with no clear guidelines on its diagnosis, clinicopathological manifestations and outcomes. Material and Methods: Out of 2930 patients who underwent HSCT at our centre between 2005 and 2020, kidney biopsy was performed in 19 allogenic and 5 autologous recipients. Results: The mean age of the cohort at transplant was 33.2 ± 7 years and 15 (62%) were males. Median time to kidney biopsy from HSCT was 14 (IQR, 9-30) months. Aplastic anemia was the most common underlying hematological disease (54.2%). All 19 allogenic recipients were classified based on clinicopathological manifestations into either thrombotic microangiopathy [TMA, 12/19 (63%)] or nephrotic syndrome [NS, 7/19 (37%)] pattern. Glomerular tuft ‘mesangiolysis’ was the dominant pattern of injury noted in 9/12 cases of TMA pattern. There was a predominance of acute microangiopathic changes restricted primarily to the glomerular compartment. Of the seven patients with NS pattern, membranous nephropathy (MN) was seen in 4 (57%) and minimal change disease (MCD) in 3 (43%) patients. Thirty nine percent (7/18) stained positive for C4d which was predominantly glomerular. Allogenic recipients who did not receive immunosuppression (IS) for renal disease had a lower eGFR at biopsy, a longer latency between withdrawal of GvHD prophylaxis and biopsy and were significantly at higher risk of kidney failure (IS: 2/11, 18.1% vs. No IS: 2/6, 33.3%, p=0.04). ‘Associated extra-renal GvHD’ occurred in 11/19 (57.9%) allogenic recipients. Patients with ‘associated extra-renal GvHD’ had significantly more death (6/11, 60% vs. 0, p=0.02) but comparable renal outcomes. Conclusion: Renal GvHD can present with or without ‘associated extra-renal GvHD’ after a prolonged period of withdrawal of GvHD prophylaxis, requiring careful diagnostic vigilance and consideration of immunosuppression.
DOI: 10.6084/m9.figshare.22269328.v1
title: Supplementary Material for: Patterns of Renal Dysfunction and Profile of Kidney Biopsies in Hematopoietic Stem Cell Transplant Recipients

description: Introduction: Post hematopoietic stem cell transplant (HSCT), kidney can be subjected to injury by various causes. Of these, Graft versus Host Disease (GvHD) affecting the kidney is an under-recognized entity with no clear guidelines on its diagnosis, clinicopathological manifestations and outcomes. Material and Methods: Out of 2930 patients who underwent HSCT at our centre between 2005 and 2020, kidney biopsy was performed in 19 allogenic and 5 autologous recipients. Results: The mean age of the cohort at transplant was 33.2 ± 7 years and 15 (62%) were males. Median time to kidney biopsy from HSCT was 14 (IQR, 9-30) months. Aplastic anemia was the most common underlying hematological disease (54.2%). All 19 allogenic recipients were classified based on clinicopathological manifestations into either thrombotic microangiopathy [TMA, 12/19 (63%)] or nephrotic syndrome [NS, 7/19 (37%)] pattern. Glomerular tuft ‘mesangiolysis’ was the dominant pattern of injury noted in 9/12 cases of TMA pattern. There was a predominance of acute microangiopathic changes restricted primarily to the glomerular compartment. Of the seven patients with NS pattern, membranous nephropathy (MN) was seen in 4 (57%) and minimal change disease (MCD) in 3 (43%) patients. Thirty nine percent (7/18) stained positive for C4d which was predominantly glomerular. Allogenic recipients who did not receive immunosuppression (IS) for renal disease had a lower eGFR at biopsy, a longer latency between withdrawal of GvHD prophylaxis and biopsy and were significantly at higher risk of kidney failure (IS: 2/11, 18.1% vs. No IS: 2/6, 33.3%, p=0.04). ‘Associated extra-renal GvHD’ occurred in 11/19 (57.9%) allogenic recipients. Patients with ‘associated extra-renal GvHD’ had significantly more death (6/11, 60% vs. 0, p=0.02) but comparable renal outcomes. Conclusion: Renal GvHD can present with or without ‘associated extra-renal GvHD’ after a prolonged period of withdrawal of GvHD prophylaxis, requiring careful diagnostic vigilance and consideration of immunosuppression.