cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.494sp3
title: Occurrence Download

description: A dataset containing 282 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bryozoa collection of the Italian National Antarctic Museum (MNA) - Data"
 ]
}

 The dataset includes 282 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004415-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w7bpar
title: Occurrence Download

description: A dataset containing 3701 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Meniocus linifolius (Stephan ex Willd.) DC."
 ]
}

 The dataset includes 3701 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063682-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4p2ag
title: Occurrence Download

description: A dataset containing 4667 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tachycineta bicolor (Vieillot, 1808)",
 "Year 2011-2018"
 ]
}

 The dataset includes 4667 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176527-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.785zft
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Magnoliopsida, Liliopsida)",
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Geometry MULTIPOLYGON (((-48.24051 1.565064, -48.149 2.092, -48.409 2.334, -48.685 2.319072, -48.792 1.824052, -48.24051 1.565064)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176581-210914110416597/datasets/export for details.
DOI: 10.15468/dl.nrywpt
title: Occurrence Download

description: A dataset containing 126858 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amazilia yucatanensis (S.Cabot, 1845)"
 ]
}

 The dataset includes 126858 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016004-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fd22c8
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Geometry POLYGON((-37.52488 -11.33449,-36.68495 -11.33449,-36.68495 -10.48559,-37.52488 -10.48559,-37.52488 -11.33449))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "Year 2001-2020"
 ]
}

 The dataset includes 159 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204064-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7x7zwx
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((25.89125 41.72235,25.94418 41.56704,26.13766 41.53407,26.27826 41.56733,26.40712 41.6396,26.3272 41.69658,26.13679 41.75445,25.89125 41.72235))",
 "TaxonKey is one of (Dendrocopos syriacus transcaucasicus Buturlin, 1910, Dendrocopos syriacus (Hemprich & Ehrenberg, 1833), Dendrocopos syriacus syriacus, Dendrocopos syriacus milleri Zarudny, 1909, Lanius minor Gmelin, 1788, Nycticorax nycticorax (Linnaeus, 1758), Nycticorax nycticorax violacea)"
 ]
}

 The dataset includes 29 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0435562-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvnsmp
title: Occurrence Download

description: A dataset containing 17441 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mogera wogura (Temminck, 1842)"
 ]
}

 The dataset includes 17441 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0354046-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39eccy
title: Occurrence Download

description: A dataset containing 367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Centaurea lagascana Graells"
 ]
}

 The dataset includes 367 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014500-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uuau3k
title: Occurrence Download

description: A dataset containing 260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sabatia campanulata (L.) Torr. ex Griseb."
 ]
}

 The dataset includes 260 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005154-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rnx6ng
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Tajikistan",
 "IucnRedListCategory is one of (CR, EN, VU)",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 28 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204063-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efwpb8
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen)",
 "Geometry POLYGON((-45.81394 -23.68616,-39.30943 -23.68616,-39.30943 -19.20499,-45.81394 -19.20499,-45.81394 -23.68616))",
 "TaxonKey is Sula leucogaster (Boddaert, 1783)"
 ]
}

 The dataset includes 20 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0426924-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uffhyz
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubia cretacea Pojark."
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105454-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmwcv2
title: Occurrence Download

description: A dataset containing 410289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Enallagma cyathigerum (Charpentier, 1840)",
 "Year 1000-2023"
 ]
}

 The dataset includes 410289 records from 1488 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013429-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wb2qqz
title: Occurrence Download

description: A dataset containing 9105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera pardus (Linnaeus, 1758)"
 ]
}

 The dataset includes 9105 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001991-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tstk76
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Procapra picticaudata Hodgson, 1846"
 ]
}

 The dataset includes 204 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001992-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gydgwv
title: Occurrence Download

description: A dataset containing 2074 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetraogallus tibetanus Gould, 1854"
 ]
}

 The dataset includes 2074 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001993-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2qsz8
title: Occurrence Download

description: A dataset containing 6813 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.7_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Accipitridae"
 ]
}

 The dataset includes 6813 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001994-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13974092
title: Catalogues of LISA-detectable sBHB inspirals and confusion backgrounds following the GWTC-3 fiducial model posterior

description: Data set

The contents of SNR_min_2_z1_LISA_SNR.tar.gz consist of approximately 10k folders, each corresponding to each of the samples of the public GWTC-3 fiducial sBHB population model posterior, and containing the following files:



population.yaml: population parameters of this sample.

background.txt: frequencies and characteristic strain squared of the sBHB confusion noise in the LISA band for this population.

population_detector_frame_SNR.h5: subset of loud sBHB sources, including but not limited to those with LISA SNR larger than 4 (missing in some samples). 


For a description of the population parameters in population.yaml and the individual source parameters in population_detector_frame_SNR.h5, see the contents of the Demo.ipynb notebook.

To be able to run the notebooks described below, uncompress the SNR_min_2_z1_LISA_SNR.tar.gz file inside a data/ subfolder under that of the notebook.

Demo notebook

For examples of how to load and process the catalogues, see the Demo.ipynb notebook.

This notebook requires the following Python packages:

    numpy, scipy, pandas, matplotlib, pyyaml, tqdm    Some of the plots in the notebook require the extrapops simulation package:

    $ git clone git@github.com:JesusTorrado/extrapops.git    $ cd extrapops    $ pip install .

References

For detailed descriptions of the generation of the data set, see the references mentioned in the Zenodo page.

Questions and comments

Please use the GitHub issue tracker or contact the corresponding authors of the papers above.
DOI: 10.5281/zenodo.13974091
title: Catalogues of LISA-detectable sBHB inspirals and confusion backgrounds following the GWTC-3 fiducial model posterior

description: Data set

The contents of SNR_min_2_z1_LISA_SNR.tar.gz consist of approximately 10k folders, each corresponding to each of the samples of the public GWTC-3 fiducial sBHB population model posterior, and containing the following files:



population.yaml: population parameters of this sample.

background.txt: frequencies and characteristic strain squared of the sBHB confusion noise in the LISA band for this population.

population_detector_frame_SNR.h5: subset of loud sBHB sources, including but not limited to those with LISA SNR larger than 4 (missing in some samples). 


For a description of the population parameters in population.yaml and the individual source parameters in population_detector_frame_SNR.h5, see the contents of the Demo.ipynb notebook.

To be able to run the notebooks described below, uncompress the SNR_min_2_z1_LISA_SNR.tar.gz file inside a data/ subfolder under that of the notebook.

Demo notebook

For examples of how to load and process the catalogues, see the Demo.ipynb notebook.

This notebook requires the following Python packages:

    numpy, scipy, pandas, matplotlib, pyyaml, tqdm    Some of the plots in the notebook require the extrapops simulation package:

    $ git clone git@github.com:JesusTorrado/extrapops.git    $ cd extrapops    $ pip install .

References

For detailed descriptions of the generation of the data set, see the references mentioned in the Zenodo page.

Questions and comments

Please use the GitHub issue tracker or contact the corresponding authors of the papers cited under the "described by" header of the Zenodo entry.
DOI: 10.5281/zenodo.13990356
title: Catalogues of LISA-detectable sBHB inspirals and confusion backgrounds following the GWTC-3 fiducial model posterior

description: Data set

The contents of SNR_min_2_z1_LISA_SNR.tar.gz consist of approximately 10k folders, each corresponding to each of the samples of the public GWTC-3 fiducial sBHB population model posterior, and containing the following files:



population.yaml: population parameters of this sample.

background.txt: frequencies and characteristic strain squared of the sBHB confusion noise in the LISA band for this population.

population_detector_frame_SNR.h5: subset of loud sBHB sources, including but not limited to those with LISA SNR larger than 4 (missing in some samples). 


For a description of the population parameters in population.yaml and the individual source parameters in population_detector_frame_SNR.h5, see the contents of the Demo.ipynb notebook.

To be able to run the notebooks described below, uncompress the SNR_min_2_z1_LISA_SNR.tar.gz file inside a data/ subfolder under that of the notebook.

Demo notebook

For examples of how to load and process the catalogues, see the Demo.ipynb notebook.

This notebook requires the following Python packages:

    numpy, scipy, pandas, matplotlib, pyyaml, tqdm    Some of the plots in the notebook require the extrapops simulation package:

    $ git clone git@github.com:JesusTorrado/extrapops.git    $ cd extrapops    $ pip install .

References

For detailed descriptions of the generation of the data set, see the references mentioned in the Zenodo page.

Questions and comments

Please use the GitHub issue tracker or contact the corresponding authors of the papers cited under the "described by" header of the Zenodo entry.
DOI: 10.5281/zenodo.10551092
title: Over 6 billion liters of Canadian milk wasted since 2012

description: This file provides data used to approximate the annual Canadian milk yield based on herd statistics and estimated on-farm use. Using a mass balance approach, subtracting farm gate sales data, the balance is assumed to be wasted before leaving the farm gate. Data sources are provided with supporting literature where relevant.

This recomended citation for this record is:

Elliot, T., Goldstein, B. P., and Charlebois, S. (2025). Over 6 billion liters of Canadian milk wasted since 2012. Ecological Economics, 227, 108413. https://doi.org/10.1016/j.ecolecon.2024.108413
DOI: 10.5281/zenodo.10551093
title: Over 6 billion liters of Canadian milk wasted since 2012

description: This file provides data used to approximate the annual Canadian milk yield based on herd statistics and estimated on-farm use. Using a mass balance approach, subtracting farm gate sales data, the balance is assumed to be wasted before leaving the farm gate. Data sources are provided with supporting literature where relevant.

This recomended citation for this record is:

Elliot, T., Goldstein, B. P., and Charlebois, S. (2025). Over 6 billion liters of Canadian milk wasted since 2012. Ecological Economics, 227, 108413. https://doi.org/10.1016/j.ecolecon.2024.108413
DOI: 10.6084/m9.figshare.26390974
title: Supplementary dataset for Quinones in Pseudomonadota, Dataset S1, HMM profiles for quinone biosynthesis annotation

description: File descriptionThis archive contains the 95 protein profiles used to annotate proteins from the quinone biosynthesis pathways:Ubiquinone (UQ) O2-dependent pathwayUQ O2-independent pathwayRquA protein for the rhodoquinone pathwayMenaquinone (MK) Men pathwayMK futalosine pathwayPlastoquinone pathwaySome profiles are to be used with GA (gathering) scores when using HMMER ('cut-ga' option):MenA: 100MenB: 350MenH: 110MenE: 300RquA: 100RquA2: 100Note that some proteins have several corresponding profiles, and the <code>"Allo_*"</code> and <code>"*decoy*"</code> profiles are used as baits for homologous proteins with different functions.ReferencesThis is part of the Supplementary material of the study "A dynamic quinone repertoire accompanied the diversification of energy metabolism in Pseudomonadota", submitted to <i>The </i><i>ISME Journal</i>.Authors' list: Sophie-Carole Chobert, Morgane Roger-Margueritat, Laura Flandrin, Safa Berraies, Christopher T. Lefèvre, Ludovic Pelosi, Ivan Junier, Nelle Varoquaux, Fabien Pierrel, Sophie S. AbbySeveral of the above included profiles were published in previous studies, while most were designed for the above-listed article."Diversification of ubiquinone biosynthesis via gene duplications, transfers, losses, and parallel evolution", <i>Molecular Biology and Evolution</i>, 2023."Ubiquinone Biosynthesis over the Entire O2 Range: Characterization of a Conserved O2-Independent Pathway", <i>mBio</i>, 2019<br>
DOI: 10.6084/m9.figshare.26391025
title: Supplementary dataset for Quinones in Pseudomonadota, Dataset S4: Phylogenies and alignments

description: ReferenceThis is part of the Supplementary material of the study "A dynamic quinone repertoire accompanied the diversification of energy metabolism in Pseudomonadota", submitted to <i>The ISME Journal</i>.Authors' list: Sophie-Carole Chobert, Morgane Roger-Margueritat, Laura Flandrin, Safa Berraies, Christopher T. Lefèvre, Ludovic Pelosi, Ivan Junier, Nelle Varoquaux, Fabien Pierrel, Sophie S. AbbyDescriptionThis folder contains the alignments (original and filtered) and the phylogenetic trees.The folder architecture is as follow:<pre><pre>.<br>├── MenA<br>│ ├── MenA.faa-aln<br>│ ├── MenA_filtered.faa<br>│ └── MenA_filtered.treefile<br>├── MenB<br>│ ├── MenB.faa-aln<br>│ └── ...<br>├── ...<br>├── species_tree<br>│ ├── gamma_tree_aln<br>│ │ ├── COG0012.faa-aln<br>│ │ ├── COG0016.faa-aln<br>│ │ └── ...<br>└── UbiV<br> ├── UbiV.faa-aln<br> ├── UbiV_filered.treefile<br> ├── UbiV_filtered.faa<br> └── UbiV_rooted<br> ├── UbiV_U32_outgroup.faa-aln<br> ├── UbiV_U32_outgroup_filtered.faa<br> └── UbiV_U32_outgroup_filtered.treefile<br></pre></pre>Within each sub-folder are presented the filtered (filtered.faa) and unfiltered alignments (.faa-aln), as well as the phylogenetic trees obtained from the filtered alignments.The different files and how they were obtained are described in the Materials & Methods section of the article.
DOI: 10.6084/m9.figshare.26391025.v1
title: Supplementary dataset for Quinones in Pseudomonadota, Dataset S4: Phylogenies and alignments

description: ReferenceThis is part of the Supplementary material of the study "A dynamic quinone repertoire accompanied the diversification of energy metabolism in Pseudomonadota", submitted to <i>The ISME Journal</i>.Authors' list: Sophie-Carole Chobert, Morgane Roger-Margueritat, Laura Flandrin, Safa Berraies, Christopher T. Lefèvre, Ludovic Pelosi, Ivan Junier, Nelle Varoquaux, Fabien Pierrel, Sophie S. AbbyDescriptionThis folder contains the alignments (original and filtered) and the phylogenetic trees.The folder architecture is as follow:<pre><pre>.<br>├── MenA<br>│ ├── MenA.faa-aln<br>│ ├── MenA_filtered.faa<br>│ └── MenA_filtered.treefile<br>├── MenB<br>│ ├── MenB.faa-aln<br>│ └── ...<br>├── ...<br>├── species_tree<br>│ ├── gamma_tree_aln<br>│ │ ├── COG0012.faa-aln<br>│ │ ├── COG0016.faa-aln<br>│ │ └── ...<br>└── UbiV<br> ├── UbiV.faa-aln<br> ├── UbiV_filered.treefile<br> ├── UbiV_filtered.faa<br> └── UbiV_rooted<br> ├── UbiV_U32_outgroup.faa-aln<br> ├── UbiV_U32_outgroup_filtered.faa<br> └── UbiV_U32_outgroup_filtered.treefile<br></pre></pre>Within each sub-folder are presented the filtered (filtered.faa) and unfiltered alignments (.faa-aln), as well as the phylogenetic trees obtained from the filtered alignments.The different files and how they were obtained are described in the Materials & Methods section of the article.
DOI: 10.15468/dl.t62wy9
title: Occurrence Download

description: A dataset containing 724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.14.40_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Accipitridae"
 ]
}

 The dataset includes 724 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001996-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmq3cb
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-106.02439 -21.86562,58.02439 -21.86562,58.02439 43.86562,-106.02439 43.86562,-106.02439 -21.86562))",
 "HasCoordinate is true",
 "TaxonKey is Psittacus erithacus erithacus",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 54 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045295-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-52269
title: Redemption tidings, vol. 34, nos. 1-52, 3 Jan. - 25 Dec. 1958

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.69puvw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Aristolochia thotteaeformis, a distinct new species from southern Vietnam"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0383513-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.