cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24161295.v1
title: SMD Simulations of ETS Inverse Sequence

description: Steered Molecular Dynamics (SMD) simulations of the following system in explicit water: ETS domain; dsDNA with nucleotide sequences 5’-CCCCTTTTCCTGAAA-3’, and neutralized with 150 mM NaCl performed with GROMACS, version 2020.4 patched with PLUMED version 2.6.3.<br>All dry_*.pdb and dry_*.xtc contain the topology and SMD trajectories. The COLVAR_* files contain the work and bias output. And the run.mdp and plumed.dat contain the input settings containing the pulling coordinate and simulations settings. The SMD runs are 100 ns long and the force constant is 500 kJ/mol.
DOI: 10.6084/m9.figshare.24161301.v1
title: SMD Simulations of ETS Anti Sequence

description: Steered Molecular Dynamics (SMD) simulations of the following system in explicit water: ETS domain; dsDNA with nucleotide sequences 5’-AAAAAAGGAAGGTGG-3’, and neutralized with 150 mM NaCl performed with GROMACS, version 2020.4 patched with PLUMED version 2.6.3.<br>All dry_*.pdb and dry_*.xtc contain the topology and SMD trajectories. The COLVAR_* files contain the work and bias output. And the run.mdp and plumed.dat contain the input settings containing the pulling coordinate and simulations settings. The SMD runs are 100 ns long and the force constant is 500 kJ/mol.
DOI: 10.6084/m9.figshare.24161301
title: SMD Simulations of ETS Anti Sequence

description: Steered Molecular Dynamics (SMD) simulations of the following system in explicit water: ETS domain; dsDNA with nucleotide sequences 5’-AAAAAAGGAAGGTGG-3’, and neutralized with 150 mM NaCl performed with GROMACS, version 2020.4 patched with PLUMED version 2.6.3.<br>All dry_*.pdb and dry_*.xtc contain the topology and SMD trajectories. The COLVAR_* files contain the work and bias output. And the run.mdp and plumed.dat contain the input settings containing the pulling coordinate and simulations settings. The SMD runs are 100 ns long and the force constant is 500 kJ/mol.
DOI: 10.5281/zenodo.8358474
title: QMT Pollen and Charcoal Data for "Anthropogenic impact on mountain vegetation of Southeast China lagged coastal plains by 2000–4000 years"

description: This data is the percentage&concentration of pollen and charcoal in Qianmutian peatland located in Southeast China for the article“Anthropogenic impact on mountain vegetation of Southeast China lagged coastal plains by 2000–4000 years”.
DOI: 10.5281/zenodo.8358473
title: QMT Pollen and Charcoal Data for "Anthropogenic impact on mountain vegetation of Southeast China lagged coastal plains by 2000–4000 years"

description: This data is the percentage&concentration of pollen and charcoal in Qianmutian peatland located in Southeast China for the article“Anthropogenic impact on mountain vegetation of Southeast China lagged coastal plains by 2000–4000 years”.
DOI: 10.5281/zenodo.8358727
title: Non-Targeted Screening of Contaminants of Emerging Concern in the Glen Valley Wastewater Treatment Plant, Botswana

description: All raw data files associated with the manuscript titled "Non-Targeted Screening of Contaminants of Emerging Concern in the Glen Valley Wastewater Treatment Plant, Botswana". These include the quality control samples, blanks and wastewater samples analysed on a waters fusion orbitrap operation in positive mode while aquiring MS/MS data. LC data is also included.
DOI: 10.5281/zenodo.8358726
title: Non-Targeted Screening of Contaminants of Emerging Concern in the Glen Valley Wastewater Treatment Plant, Botswana

description: All raw data files associated with the manuscript titled "Non-Targeted Screening of Contaminants of Emerging Concern in the Glen Valley Wastewater Treatment Plant, Botswana". These include the quality control samples, blanks and wastewater samples analysed on a waters fusion orbitrap operation in positive mode while aquiring MS/MS data. LC data is also included.
DOI: 10.5281/zenodo.8358517
title: Input Files for Phospholipids are imported into mitochondria by VDAC, a dimeric beta barrel scramblase

description: Input files for simulations in publication: Helene Jahn, Ladislav Bartoš, Grace I. Dearden, Jeremy S. Dittman, Joost C. M. Holthuis, Robert Vácha, Anant K. Menon: Phospholipids are imported into mitochondria by VDAC, a dimeric beta barrel scramblase
DOI: 10.5281/zenodo.8358516
title: Input Files for Phospholipids are imported into mitochondria by VDAC, a dimeric beta barrel scramblase

description: Input files for simulations in publication: Helene Jahn, Ladislav Bartoš, Grace I. Dearden, Jeremy S. Dittman, Joost C. M. Holthuis, Robert Vácha, Anant K. Menon: Phospholipids are imported into mitochondria by VDAC, a dimeric beta barrel scramblase
DOI: 10.6084/m9.figshare.24105501.v1
title: Supplementary Material for: A case of oropharyngeal carcinoma with an oblique neck that benefited from transoral robotic surgery

description: Transoral robotic surgery (TORS) and transoral videolaryngoscopic surgery (TOVS) are minimally invasive procedures for early-stage head and neck cancers. However, due to its unique nature, transoral resection often leads to skeletal and anatomical disorders. We describe a case in which TORS was used in a 71-year-old man with a skeletal disorder, spastic stridor, and a T2N1M0 stage I p16-positive oropharyngeal carcinoma. Prior to the procedure, he underwent right cervical dissection (levels II-IV). Although he had an oblique neck, the right side of his neck was naturally hyperextended because the dissection was performed on the right side. The right facial, lingual, and external carotid arteries were ligated in preparation for TORS. Postoperative pathological examination revealed no extranodal involvement of the metastatic lymph nodes. A two-stage TOVS procedure was performed for the oropharyngeal tumor, in which the surgeon was required to be positioned at the patient's head to allow direct manipulation. This makes the neck and oral cavity more susceptible to the skeletal effects. In contrast, in TORS, the da Vinci insertion angle can be set to match the angle of the neck, allowing surgeons to operate with less skeletal influence. TORS is more useful in this setting.
DOI: 10.6084/m9.figshare.24145479.v1
title: Supplementary Material for: Effective Management of Nasal Vestibule Squamous Cell Carcinoma with Cemiplimab: A Case Report

description: Nasal vestibule squamous cell carcinoma (SCC) is a rare malignancy with limited treatment options. This case report presents an 83-year-old female with SCC of the nasal vestibule who was ineligible for surgery or radiotherapy due to various factors. The patient was successfully treated with cemiplimab, a systemic anti-PD-1 antibody, resulting in a remarkable tumor reduction without any observed side effects. This is the first reported case of nasal vestibule SCC treated with cemiplimab, highlighting its potential as a promising therapeutic option
DOI: 10.6084/m9.figshare.24145716.v1
title: Supplementary Material for: Pulmonary spindle cell carcinoma presenting anaplastic lymphoma kinase rearrangement

description: Pulmonary spindle cell carcinoma is a subtype of pulmonary sarcomatoid carcinoma and a very rare tumor type with a poor prognosis. A few case reports have documented patients with pulmonary sarcomatoid carcinoma with anaplastic lymphoma kinase rearrangement, and the efficacy and outcomes of anaplastic lymphoma kinase inhibitors remain unclear. Herein, we present the case of a 60-year-old woman with stage IVB disease who was diagnosed with a metastatic brain tumor. This patient showed high levels of programmed cell death ligand 1 expression and anaplastic lymphoma kinase rearrangement and received pembrolizumab as the first-line treatment. Three weeks later, pembrolizumab failed to reduce the size of the primary pulmonary tumor, and the patient’s general condition did not improve. The patient received alectinib as the second-line treatment. Two months later, multiple brain metastases were observed. Hence, whole-brain irradiation was performed as treatment for multiple brain metastases, while another anaplastic lymphoma kinase inhibitor was administered; however, both treatments remained ineffective. The patient eventually died 9 months after the initiation of first-line treatment. The present case report describes the therapeutic course of a patient with pulmonary spindle cell carcinoma with an anaplastic lymphoma kinase rearrangement.
DOI: 10.6084/m9.figshare.24146232.v1
title: Supplementary Material for: Advanced female primary urethral carcinoma with nodal extension managed with exclusive use of chemoradiotherapy : report of a case and review of the relevant current literature

description: Primary urethral carcinoma (PUC) is a rare disease with frequently nodal metastasis at the time of diagnosis. Few risk factors have been established and overall prognosis remains poor. As of now, no clear therapeutic guidelines are established and management of advanced PUC often involve surgery which can have negative functional and psychological outcomes for the patient. Few authors already reported the use of chemoradiotherapy alone to avoid surgery with some good short-term results. We report the case of a 48-year-old woman with advanced high-grade urothelial carcinoma of distal urethra associated to bilateral inguinal nodal metastasis. She was similarly and successfully treated using chemoradiotherapy exclusively without significant adverse effects. This experience reinforces benefits of a surgery-sparing management, when possible, as recommended in current guidelines
DOI: 10.6084/m9.figshare.24131667.v1
title: Supplementary Material for: First female patient with a rare CIC¬-FOXO4 translocated sarcoma – a case report

description: Small round cell sarcoma is a group of undifferentiated malignancies arising in bone and soft tissue, notable for Ewing Sarcoma. Recently, a new World Health Organization classification has been introduced, including an additional subset of these sarcomas, named CIC rearranged sarcoma. Within this group, CIC-FOXO4 translocation is an exceedingly rare fusion that has been reported only four times in literature. Herein, we report in-depth the pathological, clinical and molecular features of a CIC-FOXO4 translocation-driven tumor in a 46 year old woman.
DOI: 10.6084/m9.figshare.24024444.v1
title: Supplementary Material for: Diverging Trends in Incidence of Spontaneous Intracerebral Hemorrhage in Sweden 2010–2019: An Observational Study from the Swedish Stroke Register (Riksstroke)

description: Introduction: Whereas ischemic stroke incidence has decreased in Sweden over the past decade, trends in spontaneous intracerebral hemorrhage (ICH) incidence are less well delineated. In this time period, there has been a dramatic increase in use of oral anticoagulants (OAC). The aim of our study was to investigate incidence trends in spontaneous first-ever ICH in Sweden between 2010 and 2019 with focus on non-OAC-associated and OAC-associated ICH. Methods: We included patients (≥18 years) with first-ever ICH registered in the hospital-based Swedish Stroke Register (Riksstroke) 2010 to 2019. Data were stratified by non-OAC and OAC ICH and analyzed for 2010–2012, 2013–2016 and 2017–2019. Incidence rates are shown as crude and age-specific per 100,000 person-years. Results: Between 2010 and 2019, 22,289 patients with first-ever ICH were registered; 18,325 (82.2%) patients with non-OAC ICH and 3,964 (17.8%) patients with OAC ICH. Annual crude incidence (per 100,000) of all first-ever ICH decreased by 10% from 29.5 (95% CI 28.8–30.3) to 26.7 (95% CI 26.0–27.3) between 2010–2012 and 2017–2019. The crude incidence rate of non-OAC ICH decreased by 20% from 25.7 (95% CI 25.0–26.3) to 20.7 (95% CI 20.1–21.2) whereas OAC ICH increased by 56% from 3.86 (95% CI 3.61–4.12) to 6.01 (95% CI 5.70–6.32). The proportion of OAC ICH of all first-ever ICH increased between 2010–2012 and 2017–2019 from 13.1% to 22.5% (p&lt;0.001). Proportional changes were largest in the age group ≥85 years with a decrease in non-OAC ICH by 32% from 155 (95% CI 146–164) to 106 (95% CI 98.6–113) and an increase in OAC ICH by 155% from 25.7 (95% CI 22.1–29.4) to 65.5 (95% CI 59.9–71.2). Conclusion: Incidence of first-ever ICH in Sweden decreased by 10% between 2010 and 2019. We found diverging trends with a 20% decrease in non-OAC-associated ICH and a 56% increase in OAC-associated ICH. Further research on ICH epidemiology, analyzing non-OAC and OAC-associated ICH separately, is needed to follow up these diverging trends including underlying risk factors.
DOI: 10.5281/zenodo.8288434
title: Electric-field-induced anion-π catalysis on carbon nanotubes in electrochemical microfluidic devices: Original Data

description: Original data underlying the publication entitled "Electric-field-induced anion-π catalysis on carbon nanotubes in electrochemical microfluidic devices" 1 Synthesis: synthetic procedures (notebook pages) and data (NMR, IR, MS) of compounds <strong>6</strong>–<strong>8</strong>, <strong>15</strong>, <strong>17</strong>, <strong>19</strong>, <strong>21</strong>–<strong>26</strong> 2 Catalysis in suspension: procedure (notebook pages) and HPLC chromatograms (for compounds <strong>6</strong> and <strong>8</strong>) or NMR spectra (for compound<strong> 9</strong>) 3 Catalysis using electromicrofluidics: procedure (notebook pages) and HPLC chromatograms
DOI: 10.5281/zenodo.8288435
title: Electric-field-induced anion-π catalysis on carbon nanotubes in electrochemical microfluidic devices: Original Data

description: Original data underlying the publication entitled "Electric-field-induced anion-π catalysis on carbon nanotubes in electrochemical microfluidic devices" 1 Synthesis: synthetic procedures (notebook pages) and data (NMR, IR, MS) of compounds <strong>6</strong>–<strong>8</strong>, <strong>15</strong>, <strong>17</strong>, <strong>19</strong>, <strong>21</strong>–<strong>26</strong> 2 Catalysis in suspension: procedure (notebook pages) and HPLC chromatograms (for compounds <strong>6</strong> and <strong>8</strong>) or NMR spectra (for compound<strong> 9</strong>) 3 Catalysis using electromicrofluidics: procedure (notebook pages) and HPLC chromatograms
DOI: 10.25451/flinders.24082602
title: <b>Airflow dynamics and aeolian sand transport across a beach-climbing dune-clifftop dune system</b>

description: This study presents an analysis of wind flow and sediment transport from the beach, up a 50m high, long (130m), steep (mean slope 26°) climbing dune and across a 1.5 m high max, 85 m long and 17.5 m wide clifftop dune 30km south of Dakhla in Morocco, NW Africa during highly oblique incident wind conditions. Multiple 2D sonic and cup/vane anemometers and sand traps were utilised for measurements. Flow steering was significant on the upper climbing dune. Flow deceleration occurred near the dune toe, and topographic forcing of flow was considerable on the upper slopes of the climbing dune. Near-surface flow steadiness (CV<sub>U1</sub>, CV<sub>U0.25</sub>) on the climbing dune straight slope segment was low and constant The distance upslope over which the airflow reached the speed comparable to that on the beach increases as the incident wind speed increases. The greatest flow acceleration and speed-up was observed at the cliff edge reaching 250% at 1m height and 220% at 0.25m height for the lowest incident wind speed class (4-5 m/s). The sand transport rate declined from the beach to the climbing dune toe and lower slope, but at the uppermost section of the climbing dune was 4 times higher than at the beach for the 7-8m/s incident wind speed. Sand in aeolian transport was generally finer than surface sand with mean grain size increasing up the slope. A comparison of the sand transport data collected with sand transport models, and the effects of slope on aeolian transport are also examined.
DOI: 10.25451/flinders.24082602.v1
title: <b>Airflow dynamics and aeolian sand transport across a beach-climbing dune-clifftop dune system</b>

description: This study presents an analysis of wind flow and sediment transport from the beach, up a 50m high, long (130m), steep (mean slope 26°) climbing dune and across a 1.5 m high max, 85 m long and 17.5 m wide clifftop dune 30km south of Dakhla in Morocco, NW Africa during highly oblique incident wind conditions. Multiple 2D sonic and cup/vane anemometers and sand traps were utilised for measurements. Flow steering was significant on the upper climbing dune. Flow deceleration occurred near the dune toe, and topographic forcing of flow was considerable on the upper slopes of the climbing dune. Near-surface flow steadiness (CV<sub>U1</sub>, CV<sub>U0.25</sub>) on the climbing dune straight slope segment was low and constant The distance upslope over which the airflow reached the speed comparable to that on the beach increases as the incident wind speed increases. The greatest flow acceleration and speed-up was observed at the cliff edge reaching 250% at 1m height and 220% at 0.25m height for the lowest incident wind speed class (4-5 m/s). The sand transport rate declined from the beach to the climbing dune toe and lower slope, but at the uppermost section of the climbing dune was 4 times higher than at the beach for the 7-8m/s incident wind speed. Sand in aeolian transport was generally finer than surface sand with mean grain size increasing up the slope. A comparison of the sand transport data collected with sand transport models, and the effects of slope on aeolian transport are also examined.
DOI: 10.6084/m9.figshare.24138909.v1
title: Supplementary Material for: Macula-off retinal detachment with refractory macular hole previously closed with autologous platelet rich plasma: a case report

description: PURPOSE: To report a case of a refractory full thickness macular hole (FTMH) complicated with recurrent retinal detachment (RD) previously treated with an autologous platelet rich plasma (aPRP) plug. CASE PRESENTATION: A 65-years old male patient presented to our department with a FTMH, retinal detachment (RD) and a giant retinal break. Preoperative best corrected visual acuity (BCVA) was 1.40 logMAR (20/500). A 25-G pars plana vitrectomy (PPV) was performed, with peripheral retinal-breaks laser barrage, peeling of the internal limiting membrane (ILM), and silicon oil injection. One month later, spectral domain optical coherence tomography (SD-OCT) showed the persistence of the FTMH with a diameter of 712 µm. Therefore, the patient underwent silicon oil removal and autologous platelet-rich plasma (aPRP) injection with good anatomical outcome and improvement of BCVA to 0.6 log-MAR (20/80). Two months later a recurrence of macula-off RD was detected, but SD-OCT showed that the aPRP plug was still in place and kept the two margins of the macular hole together. The patient underwent a further PPV with silicon oil injection and subsequent silicon oil removal with no postoperative complications. Two months later, the retina remained attached, SD-OCT confirmed FTMH closure and BCVA was 0.52 logMAR (20/63). CONCLUSION: This case report aims to underline the remarkable efficacy of aPRP in promoting FTMH closure, which was maintained despite subsequent recurrence of macula-off RD.
DOI: 10.5281/zenodo.8358592
title: Dataset and code for automated classical and EDoF lens design

description: This file includes (1) automated classical lens design code and (2) test images and reconstruction network checkpoints for EDoF imaging.
DOI: 10.5281/zenodo.8358591
title: Dataset and code for automated classical and EDoF lens design

description: This file includes (1) automated classical lens design code and (2) test images and reconstruction network checkpoints for EDoF imaging.
DOI: 10.6084/m9.figshare.23940009.v1
title: Supplementary Material for: Financial advisers’ and key informants’ perspectives on the Australian industry-led Moratorium on Genetic Tests in Life Insurance

description: Introduction: Genetic discrimination (GD) in the context of life insurance is a perennial concern in Australia and internationally. To address such concerns in Australia, an industry self-regulated Moratorium on Genetic Tests in Life Insurance was introduced in 2019 to restrict life insurers from using genetic test results in underwriting for policies under certain limits. Financial advisers (FAs) are sometimes engaged by clients to provide financial advice and assist them to apply for life insurance. They are therefore well-placed to comment on GD and the operation of the Moratorium. Despite this, the financial advising sector in Australia have yet to be studied empirically with regards to GD and the Moratorium. This study aims to capture this perspective by reporting on interviews with the financial advising sector. Methods: Ten semi-structured qualitative interviews were conducted with FAs and key informants and analysed using thematic analysis. Discussion/ conclusion(s): Participants’ level of awareness and understanding of the Moratorium varied. Participants reported mixed views on the Moratorium’s effectiveness and how it operates in practice, and perceived industry compliance. Participants also provided reflections on Australia’s current approach to regulating GD, with most participants supporting the concept of industry self-regulation but identifying a need for this to be supplemented with external oversight and meaningful recourse mechanisms for consumers. Our results suggest that there is scope to increase FAs’ awareness of GD, and that further research, consultation and policy consideration are required to identify an optimal regulatory response to GD in Australia
DOI: 10.6084/m9.figshare.24099420.v1
title: Supplementary Material for: A Randomized, Double-Blind, Placebo-Controlled, Multicenter, 16-Week Trial to Evaluate the Efficacy and Safety of FB-401 in Children, Adolescent and Adult Subjects (Ages 2 Years and Older) with Mild to Moderate Atopic Dermatitis

description: Background: Atopic dermatitis is a common chronic, relapsing and remitting inflammatory skin disorder associated with cutaneous dysbiosis. Current treatment options often fail to adequately control the disease and have unfavorable safety profiles. There is a need for new options that address these treatment shortcomings. Objective: To evaluate the efficacy, safety, and tolerability of FB-401, a live therapeutic product of 3 strains of Roseomonas mucosa, compared to matching placebo applied topically 3 times per week to participants ages ≥ 2 years of age with mild to moderate atopic dermatitis. Methods: A randomized, double-blind, placebo-controlled, parallel-group study. The primary outcome was the proportion of participants with 50% improvement in Eczema Area and Severity Index score from baseline at week 16. 154 subjects aged 2 or older with a clinical diagnosis of atopic dermatitis as defined by Hanifin and Rajka criteria with mild or moderate severity were randomized 1:1 via Interactive Web Response System to FB-401 or placebo. Results: The proportion of subjects who achieved the primary outcome was similar between both treatment groups, with no significant treatment group differences observed at any post-baseline visit. The number of treatment emergent adverse events and the number of subjects with at least one was similar across treatment groups. One serious adverse event not related to treatment was reported. No treatment emergent adverse events led to treatment discontinuation or study discontinuation. Conclusions: FB-401 showed an acceptable safety profile, but failed to prove superior to placebo in treating children and adults with mild to moderate atopic dermatitis.