cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5100634.v3
title: Abies nebrodensis chorology

description: Distribution map of Sicilian fir (<i>Abies nebrodensis</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.6084/m9.figshare.12752009.v1
title: Gene database of Alteromonas macleodii ATCC 27126

description: <i>Alteromonas macleodii</i> is a Gram-negative bacilli bacterium that thrives under oxygenated environment at mesophilic temperatures. A marine bacterium without motility, the species has since attracted much attention for its role in the marine ecosystem, particularly with regards to metabolic exchanges with other microorganisms in the aquatic environment. Much remains to be known about this marine bacterium, and this work sought to provide fundamental information of <i>A. macleodii</i> ATCC 27126 genetic repertoire by parsing the annotated genome sequence of the bacterium downloaded from Genbank. Comprising gene name, gene function, and gene sequence of all genes in the genome of <i>A. macleodii</i>, the resource should be useful for understanding fundamental processes available in the bacterium, and help us contemplate the likely role of the bacterium in the marine environment.
DOI: 10.6084/m9.figshare.25435822.v2
title: HIV64148 Simulated FASTQ

description: Prefix: Simulated_FASTQFile type: FASTQThis archive contains simulated reads from NanoSim with template FASTAEach FASTQ is located within a subfolder corresponding to its simulation number.- Simulated_FASTQ_read_length_1000-4000.zip :: 20 FASTQ x 4 median (1k, 2k, 3k, 4k nucleotide) used in read length experiment.- Simulated_FASTQ_2M_Mixture.zip :: 100 FASTQ used in performance benchmark and multi-HIV-1 subtypes mixture experiment.- Simulated_FASTQ_2C_Mixture.zip :: 100 FASTQ used in multi-HIV-1 subtypes mixture experiment.- Simulated_FASTQ_1M1C_Mixture.zip :: 100 FASTQ used in multi-HIV-1 subtypes mixture experiment.- Simulated_FASTQ_2M1C_Mixture.zip :: 100 FASTQ used in multi-HIV-1 subtypes mixture experiment.
DOI: 10.6084/m9.figshare.26089233.v1
title: HiGTS_2012s2

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2012s2 contains the data from April 1, 2012 to June 30, 2012.
DOI: 10.6084/m9.figshare.29148407.v1
title: Supplementary Material for: Long-term outcome of ciclosporin and infliximab as rescue therapy in steroid-refractory acute severe ulcerative colitis

description: Background: Ciclosporin and infliximab have equal short-term efficacy in treating acute severe ulcerative colitis (ASUC). However, data about long-term outcome and switching to a second rescue therapy is limited. 

Methods: Patients with steroid-refractory ASUC treated at a tertiary center in Switzerland were retrospectively analysed regarding the outcome of different rescue therapies. Colectomy-free survival rates at 1, 3 and 5 years were estimated through Kaplan-Meier method. Furthermore, predictors of colectomy, the presence of adverse events at 1 year and mortality during the entire follow-up were assessed.

Results: We analysed a total of 46 patients who were treated initially with either ciclosporin (n=31) or infliximab (n=15) due to steroid-refractory ASUC between January 2010 and July 2021. 13% of patients received a second rescue therapy. In sum, 78%, 67% and 48% were colectomy-free at 1, 3 and 5 years, respectively. Although there was a significant difference between the three arms in colectomy-free survival (p = 0.026), a post-hoc analysis could not demonstrate a difference between each individual therapy compared to another. The post-hoc analysis indicated a non-significant benefit with sequential therapy in comparison to CsA regarding the colectomy-free survival (p = 0.087). The outcome between infliximab and ciclosporin was not statistically different (p = 0.149). The number of previous advanced therapies was negatively associated with 1-year colectomy-free survival (p = 0.049). Other variables such as age at hospitalisation, sex, dose of steroids, disease duration and albumin did not correlate with a higher risk of 1-year colectomy. 


Conclusions: This real-world single center analysis confirms the equal efficacy and safety of infliximab and ciclosporin over a follow-up of 5 years. Patients not responding to the first may benefit of a second rescue therapy without increasing the risk of complication or mortality.
DOI: 10.6084/m9.figshare.3520424.v1
title: Appendix A. Selecting Bayesian network structure: number of states and threshold values.

description: Selecting Bayesian network structure: number of states and threshold values.
DOI: 10.15468/dl.hs9sgf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina silus (Ascanius, 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9919 -21.4718,35.9648 -21.4413,35.9648 -24.1383,36.0558 -23.8719,35.9919 -21.4718))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013307-250525065834625/datasets/export for details.
DOI: 10.17632/cnrvy8czt7
title: MULTI-IFE—A one-dimensional computer code for Inertial Fusion Energy (IFE) target simulations

description: Abstract The code MULTI-IFE is a numerical tool devoted to the study of Inertial Fusion Energy (IFE) microcapsules. It includes the relevant physics for the implosion and thermonuclear ignition and burning: hydrodynamics of two component plasmas (ions and electrons), three-dimensional laser light ray-tracing, thermal diffusion, multigroup radiation transport, deuterium-tritium burning, and alpha particle diffusion. The corresponding differential equations are discretized in spherical one-dimensional L... Title of program: MULTI-IFE Catalogue Id: AEZR_v1_0 Nature of problem The implosion and ignition of inertial energy fusion capsules driven either directly by laser beams or indirectly by thermal radiation. Versions of this program held in the CPC repository in Mendeley Data AEZR_v1_0; MULTI-IFE; 10.1016/j.cpc.2016.02.014 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/t6wys3f9nt
title: Monte Carlo calculation of multiple scattering effects in thermal neutron scattering experiments

description: Abstract Title of program: SLOW NEUTRON MULTIPLE SCATTERING Catalogue number: ACIC Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland (see application form in this issue) Computer: IBM 370/195; Installation: Argonne National Laboratory Operating system: OS/360, Release 21.7 Programming language used: FORTRAN IV High speed storage required: 75000 words. No. of bits in a word: 32 Overlay structure: None No. of magnetic tapes required: None Other peripherals used: Car... Title of program: SLOW NEUTRON MULTIPLE SCATTERING Catalogue Id: ACIC_v1_0 Nature of problem In a thermal neutron scattering experiment, the measured cross section includes both single and multiple scattering events. ... ADAPTATION SUMMARY: Vol:Year:Page 9:1975:59 "0001 SLAB GEOMETRY" "Monte Carlo calculation of multiple scattering effects in thermal neutron scattering experiments; modification to slab geometry." J.R.D. Copley ADAPTATION SUMMARY: Vol:Year:Page 9:1975:64 "0002HORIZONTAL CYLINDER GEOMETRY" "Monte Carlo calculation of multiple scattering effects in thermal neutron scattering experiments; modification to horizontal cylinder geometry." J.R.D. Copley ADAPTATION SUMMARY: Vol:Year:Page 21:1981:431 "0003 NEW ELSCAT SUBROUTINE" "Monte Carlo calculation of multiple scattering effects in thermal neutron scattering experiments: improved computation of elastic coherent scattering intensities." J.R.D. Copley CORRECTION SUMMARY: Vol:Year:Page 20:1980:459 "000ACORRECTION 11/10/79" "Monte Carlo calculation of multiple scattering effects in thermal neutron scattering experiments. (C.P.C. 7(1974)289)." J.R.D. Copley Note: adaptation instructions are contained in source code Note: correction instructions are contained in source code Versions of this program held in the CPC repository in Mendeley Data ACIC_v1_0; SLOW NEUTRON MULTIPLE SCATTERING; 10.1016/0010-4655(74)90028-9 ACIC_v2_0; MSCAT85; 10.1016/0010-4655(86)90118-9 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.22794815.v1
title: Invoice Approvalled Item

description: This event log is a simulation event log that simulates the process of university invoice fees, containing 168 trajectories and 13 activities.
DOI: 10.6084/m9.figshare.25604007.v1
title: Data for Anthropogenic eutrophication and stratification strength control hypoxia in the Yangtze Estuary

description: Data for Anthropogenic eutrophication and stratification strength control hypoxia in the Yangtze Estuary. The data has been compiled into a comprehensive Excel file named "Compilation Data for CEE," which contains six sheets. These sheets include data on Redox Sensitive Trace Elements (RSTEs) data, Diatom Data, Long-term Climate Data in the Yangtze River Basin, Chronology Data, Grain Size Analysis Data, and Marine Observational Data.
DOI: 10.17632/w36hpf86j2
title: Lumpy Skin Images Dataset

description: Content:
  - It is an images directory structure branched into 2 subfolders (LUMPY SKIN & NORMAL SKIN).
TOTAL LUMPY SKIN IMAGES: 324
TOTAL NORMAL SKIN IMAGES: 700

Context
 - This is a preprocessed dataset.
 - Images are resized to 256x256 in PNG format.

Inspiration: 
 - Help the researchers to detect and classify lumpy skin and normal skin using machine learning/ deep learning.
 - To develop an optimized classification model.
DOI: 10.6084/m9.figshare.1403592.v1
title: Creolimax fragrantissima genome data

description: The genome assembly of the ichthyosporean <em>Creolimax fragrantissima</em>, the annotation, mRNA and protein sequences as described in the paper "<em>Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals</em>".
DOI: 10.6084/m9.figshare.25907677.v3
title: cellulose structure

description: cellulose structure
DOI: 10.6084/m9.figshare.28903460.v1
title: Inverse Design to Capture Latent Real-space Topology in Aperiodic Systems Through Machine Learning

description: The file "Data" contains the datasets presented in the paper titled "Inverse Design to Capture Latent Real-space Topology in Aperiodic Systems Through Machine Learning". There are three folders named "Coupling_for_1D_IDA_model", "Coupling_for_2D_IDA_model", and "Experiments_with_disorders". The first one contains three sheets—"Initial_settings", "Frequency_customization", "Distribution_customization", which are the raw data for generating Figs. 2, 3, S6, and S7. The second one contains three sheets—"Initial_settings", "Frequency_customization", "Distribution_customization", which are the raw data for generating Figs. 5, S10, and S11. The third one contains the raw data from experiments for generating Fig.4c.<br>The file "Code" contains the related code of the paper titled " Inverse Design to Capture Latent Real-space Topology in Aperiodic Systems Through Machine Learning". There are six folders named "GDOA_1D", "GDOA_2D", "1D_original_spectral_localizer", "1D_reduced_spectral_localizer", "2D_original_spectral_localizer", and "Winding_number". The first one contains the codes for generating coupling in Figs. 2, 3, and Figs. S6, S7. The second one contains the codes for generating coupling in Fig. 5, and Figs. S10, S11. The third one contains the codes for generating Figs. 2j–2r. The fourth one contains the codes for generating Figs. 3g–3i, 3k–3m, 3o–3q, 3s–3u, and Figs. 5e, 5g, 5i. The fifth one contains the codes for generating Figs. S9b–S9d, S9f–S9h, and S9j–S9l. The sixth one contains the codes for generating Figs. 3f, 3j, 3n, and 3r.
DOI: 10.17632/73dmw4czm3
title: Data for: Ontogenetic modifications produce similar phenotypes in distantly related click beetles (Coleoptera: Elateridae)

description: Supplementary data
DOI: 10.17632/n7jcscxz7c
title: A numerical Hartree-Fock program for diatomic molecules

description: Abstract This paper describes an algorithm and a computer program which solves numerically (virtually exactly) equations of the restricted open-shell Hartree-Fock and Hartree-Fock-Slater model for diatomic molecules Title of program: 2dhf Catalogue Id: ADEB_v1_0 Nature of problem The program finds virtually exact solutions of the Hartree-Fock and Hartree-Fock-Slater equations for diatomic molecules. The lowest energy eignestates of a given irreducible representation and spin can be obtained. Versions of this program held in the CPC repository in Mendeley Data ADEB_v1_0; 2dhf; 10.1016/0010-4655(96)00098-7 ADEB_v2_0; 2dhf; 10.1016/j.cpc.2012.09.033 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.26188/28739234.v1
title: City of Echoes - Production Stills - Digital Photographs

description: Undertaking the role of producing Production Stills as Digital Photographs processed using Adobe Lightroom for the production City of Echoes, shot in NantStudios on the Dockland Studio lot, supporting the creative research and practice of film writer, director and researcher, Andrew O'Keefe.Creative research as subset of Andrew O'Keefe's project to research producing via Adobe Lightroom processed Production Stills relating to the creative research of filmmaking practice in a Virtual Production environment, responding to the aesthetic influence of Jeffrey Smart in a narrative context.https://www.instagram.com/cityofechoesfilm/https://finearts-music.unimelb.edu.au/unbound/city-of-echoes<br>
DOI: 10.6084/m9.figshare.13739086.v6
title: Amazonian mammal monitoring using aquatic environmental DNA

description: Run 1<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 2<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 3<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 4<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 5<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 6<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 7<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 8<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 9<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 10<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 11<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 12<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file.<br> <br> Run 13<br> <br> Site data<br> A table with 1)Site name, 2)Drainage basin, 3)Latitude, 4)Longitude, 5)Strahler order, 6)Watercourse type, 7)Sampling years, 9)PCR sample name for Replicate 1, 10)PCR sample name for Replicate 2<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file. <br> Run 14<br> Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file. Sites_data.csv <br> Metadata A table with 1)Library name, 2)Drainage basin, 3)PCR sample name, 4)Tag, 5)Reverse primer, 6)Forward primer, 7)Run number Metadata.csv <br> Metadata_Sinnamary_Fish A table with 1)Library name, 2)Drainage basin, 3)PCR sample name, 4)PCR number, 5)Tag, 6)Reverse primer, 7)Forward primer, 8)Run number Metadata_Sinnamary_Fish<br>
DOI: 10.6084/m9.figshare.24599412.v1
title: hand drawn dataset

description: The dataset introduced by Brinkhaus et al. (2022)[1], which consists of hand-drawn chemical depictions matched with their corresponding SMILES representations, is partitioned into 4,070 samples for training and validation purposes, along with an additional 1,018 samples for testing. [1]Henning Otto Brinkhaus, Achim Zielesny, Christoph Steinbeck, and Kohulan Rajan. Decimer - hand-drawn molecule images dataset, 2022.
DOI: 10.6084/m9.figshare.26197718.v1
title: Stroke connectomics

description: Experimental rat models of stroke and hemorrhage are important tools to investigate cerebrovascular disease pathophysiology mechanisms, yet how significant patterns of functional impairment induced in various models of stroke are related to changes in connectivity at the level of neuronal populations and mesoscopic parcellations of rat brains remain unresolved. To address this gap in knowledge, we employed two middle cerebral artery occlusion models and one intracerebral hemorrhage model with variant extent and location of neuronal dysfunction. Motor and spatial memory function was assessed and the level of hippocampal activation via Fos immunohistochemistry. Contribution of connectivity change to functional impairment was analyzed for connection similarities, graph distances and spatial distances as well as the importance of regions in terms of network architecture based on the <i>neuroVIISAS</i> rat connectome. We found that functional impairment correlated with not only the extent but also the locations of the injury among the models. In addition, via coactivation analysis in dynamic rat brain models, we found that lesioned regions led to stronger coactivations with motor function and spatial learning regions than with other unaffected regions of the connectome. Dynamic modeling with the weighted bilateral connectome detected changes in signal propagation in the remote hippocampus in all 3 stroke types, predicting the extent of hippocampal hypoactivation and impairment in spatial learning and memory function. Our study provides a comprehensive analytical framework in predictive identification of remote regions not directly altered by stroke events and their functional implication.The data available here allow the reproduction of the findings published in the paper "Connectome-based prediction of functional impairment in experimental stroke models" using the <i>neuroVIISAS</i> framework.
DOI: 10.6084/m9.figshare.28594787.v1
title: Supplementary Material for: Neurotrophic effects of GH and GnRH in a full sciatic nerve transection model in male rats

description: Peripheral nerve injuries, such as sciatic nerve transection (SNT), are associated with significant sensory and motor deficits. Growth hormone (GH) and gonadotropin-releasing hormone (GnRH) have been shown to exert neurotrophic effects that can promote nerve regeneration and functional reinnervation. However, the combined impact of these hormones on peripheral nerve repair remains poorly understood. This study aimed to analyze the individual and combined effects of GH and GnRH in a rat model of SNT, using orchiectomized male rats to prevent steroid-mediated neuroregeneration and neuroprotection. Treatments included GH, GnRH, or a combination of both, with subsequent assessments of motor and sensory function, as well as histological and molecular analyses of the nerve tissue and associated muscles. The results revealed that both GH and GnRH significantly enhanced nerve regeneration and neural function when administered individually. Treated animals exhibited improved axonal growth, myelination, as well as sensory and motor functional recovery. In addition, GH and GnRH reduced neuroinflammation/reactive gliosis, as evidenced by the downregulation of TNFα IL-1β, Iba-1 and GFAP, which are typically elevated following nerve injury. These findings indicate that each hormone independently supports critical aspects of nerve repair and functional restoration after injury. Surprisingly, when GH and GnRH were administered together, their beneficial effects were not additive. Instead, the combination of the two treatments led to diminished outcomes in comparison to either treatment alone. Specifically, animals receiving the combined therapy showed reduced axonal organization, impaired myelination, and less functional improvement. In conclusion, GH and GnRH demonstrate potential as individual therapeutic agents for promoting nerve regeneration, each providing significant benefits in terms of axonal growth, functional recovery, and reduction of neuroinflammation.
DOI: 10.6084/m9.figshare.28825538.v1
title: ART ANOVA tables for non-parametric two-factor data

description: This study examines how the vascular redox environment influences macrophage accumulation and phenotype in chronic hypoxia-induced pulmonary hypertension.
DOI: 10.6084/m9.figshare.7905254.v1
title: Dengue and mosquito surveillance, Vitoria, Brazil

description: Weekly reports of cases of "dengue-like illness" and number of trapped mosquitoes for the neighborhoods of Vitoria, Brazil, along with weekly weather station data. These data are used to estimate latent time series of mosquito mortality rates in a Bayesian mechanistic framework, the output of which is also included. Code to implement this model is available at https://github.com/clint-leach/mosquito-recon and the methods further described in the manuscript: <br><br><strong> </strong>Leach CB, Hoeting JA, Pepin KM, Eiras AE, Hooten MB, Webb CT (2020) Linking mosquito surveillance to dengue fever through Bayesian mechanistic modeling. PLoS Negl Trop Dis 14(11): e0008868. https://doi.org/10.1371/journal.pntd.0008868<br>Files:<br>README.md provides description of the columns of each of the data files.<br>Data:<br>Vitoria.data.csv contains the dengue and mosquito surveillance data, providing weekly observations from week 1 of 2008 to week 34 of 2012.<br>Vitoria.weather.csv contains daily weather data from January 1, 2008 to December 31, 2012.<br>Model output:<br>chain.rds stores the HMC chain from the model described in the paper above.<br>moving_control.rds stores the results from control simulations described in the paper above.<br>Code to generate and process the model output is available in the Github repository linked above.<br><br>