cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wjk7sy
title: Occurrence Download

description: A dataset containing 2252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-170 5,-50 5,-50 83,-170 83,-170 5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leucospora multifida (Michx.) Nutt."
 ]
}

 The dataset includes 2252 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005574-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.722at7
title: Occurrence Download

description: A dataset containing 4454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-170 5,-50 5,-50 83,-170 83,-170 5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Liatris pycnostachya Michx."
 ]
}

 The dataset includes 4454 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005524-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.htb6vt
title: Occurrence Download

description: A dataset containing 6695 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-117.73255 32.41058,-116.68579 32.41058,-116.68579 33.52228,-117.73255 33.52228,-117.73255 32.41058))",
 "HasGeospatialIssue is false",
 "TaxonKey is Mammalia",
 "Year 2024-2025"
 ]
}

 The dataset includes 6695 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005525-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.caau59
title: Occurrence Download

description: A dataset containing 3900 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia mexicana L."
 ]
}

 The dataset includes 3900 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005528-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuxt2t
title: Occurrence Download

description: A dataset containing 3999 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-170 5,-50 5,-50 83,-170 83,-170 5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Liatris spicata (L.) Willd."
 ]
}

 The dataset includes 3999 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005527-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94mdhg
title: Occurrence Download

description: A dataset containing 1211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-170 5,-50 5,-50 83,-170 83,-170 5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Linum sulcatum Riddell"
 ]
}

 The dataset includes 1211 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005530-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.553yhp
title: Occurrence Download

description: A dataset containing 9979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-170 5,-50 5,-50 83,-170 83,-170 5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lithospermum incisum Lehm."
 ]
}

 The dataset includes 9979 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005531-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gtp724
title: Occurrence Download

description: A dataset containing 2044 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-170 5,-50 5,-50 83,-170 83,-170 5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lysimachia quadriflora Sims"
 ]
}

 The dataset includes 2044 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005532-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxs3ky
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Platystele alucitae Luer"
 ]
}

 The dataset includes 59 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005577-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7aq87
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Platystele ovalifolia (H.Focke) Garay & Dunst."
 ]
}

 The dataset includes 96 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005533-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eyxv4x
title: Occurrence Download

description: A dataset containing 1479 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dillenia suffruticosa (Griff.) Martelli"
 ]
}

 The dataset includes 1479 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007097-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-42273
title: Claims (GX 14638 - GX 15135), 1988

description: Collection of claims filed against the LAPD with regards ranging from wrongful death to violation of civil rights, etc., 1988. PART OF A SERIES: The series includes materials related to the work product of Price Waterhouse, whose staff investigated citizen complaints and civil litigation claims involving the LAPD. Included are claims reports, claims analyses, card files, and arbitration reports; summaries of 83 selected civil litigation cases; materials from the personnel files of LAPD officers named in these cases, as well as documents listing their subsequent penalties; and statistics that break complaints down according to a variety of criteria, including race, gender, and police division.
DOI: 10.15468/dl.zp5vxe
title: Occurrence Download

description: A dataset containing 35560 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NIAES Coleoptera Specimen Database"
 ]
}

 The dataset includes 35560 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002430-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o41tst
title: Occurrence Download

description: A dataset containing 44057 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Potamogeton perfoliatus L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44057 records from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002430-150504100648427/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqhf75
title: Occurrence Download

description: A dataset containing 1022 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Caracterización de grupos hidrobiológicos en Área de perforación exploratoria LLANOS 123, departamento de Casanare, Cundinamarca y Meta, Colombia"
 ]
}

 The dataset includes 1022 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007069-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oe5btc
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Encyclia brassavolae (Rchb.f.) Dressler"
 ]
}

 The dataset includes 32 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002430-150912100344238/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-786
title: NCJRS custom search "Policewomen", 1991

description: Results of NCJRS search on Policewomen. PART OF A SERIES: Graham & James collected research materials pertaining to the role of gender in policing. Included in the series are academic journal articles, working papers, reports, and a dissertation regarding the role and performance of female police officers. Also included is the firm's correspondence. Most materials in the series are derived from academic sources.
DOI: 10.15468/dl.guhkna
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dyera polyphylla (Miq.) Steenis"
 ]
}

 The dataset includes 126 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007088-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tc3ahe
title: Occurrence Download

description: A dataset listing the 59 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Beta vulgaris L."
 ]
}

 The dataset's 59 records were derived from 610 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004486-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbkfoj
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pleurothyrium oblongum van der Werff",
 "Country is Costa Rica",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002430-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwce4a
title: Occurrence Download

description: A dataset containing 811 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lithobates magnaocularis (Frost & Bagnara, 1974)"
 ]
}

 The dataset includes 811 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011143-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-10288
title: West, Dr. Louis, 1990 - 1991 June

description: West, Dr. Louis, 1990 - 1991 June 23. PART OF A SERIES: The staff of Gibson, Dunn & Crutcher coordinated witness interviews and conducted an extensive review of complaints filed against LAPD officers. Included in the series are summaries of witness interviews, statistics and investigative reports related to citizen complaints, an analysis on adjudicated cases involving use-of-force complaints, reports regarding LAPD's recruitment of African American officers and community oriented policing, and an excerpt from Malcolm Sparrow's Beyond 9-1-1. Also included are materials related to the firm's work product, including attorney notes, work plans, memoranda, and drafts of chapters for the Commission report.
DOI: 10.15468/dl.6jawbl
title: Occurrence Download

description: A dataset containing 1064 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clerodendrum trichotomum Thunb.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1064 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002430-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrhhka
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((96.35277 -4.75579,132.64723 -4.75579,132.64723 9.75579,96.35277 9.75579,96.35277 -4.75579))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lindsaea crispa Baker"
 ]
}

 The dataset includes 21 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007078-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oqtiq3
title: Occurrence Download

description: A dataset containing 6783 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nigeria",
 "HasCoordinate is true",
 "HasGeospatialIssue is true"
 ]
}

 The dataset includes 6783 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002430-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-9696
title: Adams, Dr. Reed (2 of 3), 1980-1991

description: Adams, Dr. Reed (2 of 3), 1980 July - 1991 July 4. PART OF A SERIES: The staff of Gibson, Dunn & Crutcher coordinated witness interviews and conducted an extensive review of complaints filed against LAPD officers. Included in the series are summaries of witness interviews, statistics and investigative reports related to citizen complaints, an analysis on adjudicated cases involving use-of-force complaints, reports regarding LAPD's recruitment of African American officers and community oriented policing, and an excerpt from Malcolm Sparrow's Beyond 9-1-1. Also included are materials related to the firm's work product, including attorney notes, work plans, memoranda, and drafts of chapters for the Commission report.
DOI: 10.15468/dl.temwfi
title: Occurrence Download

description: A dataset containing 9451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brassica rapa L.",
 "HasCoordinate is true",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 9451 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002430-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ga68np
title: Occurrence Download

description: A dataset containing 533 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stemonaria irregularis (Rex) Nann.-Bremek., R.Sharma & Y.Yamam., 1984"
 ]
}

 The dataset includes 533 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006556-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mmbse
title: Occurrence Download

description: A dataset containing 2121593 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-77.43787 3.17839,-78.25652 4.11743,-80.54392 4.64714,-84.97426 3.94888,-85.09465 2.35974,-84.56493 0.93914,-82.03675 0.36127,-79.50857 0.74652,-77.96758 0.4335,-76.6433 -0.28883,-75.29493 -0.57777,-74.50036 -1.15564,-73.63356 -1.78166,-72.95937 -1.42049,-72.57413 -0.84262,-72.86306 0.24088,-74.19213 1.14133,-75.10709 1.98406,-76.86478 2.61008,-77.43787 3.17839))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2121593 records from 897 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005975-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcpsm7
title: Occurrence Download

description: A dataset containing 187495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mytilus edulis"
 ]
}

 The dataset includes 187495 records from 501 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057865-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17285560
title: Sustainability Trait Preferences and Risk Attitudes among Spanish 'Gala' Apple Growers (2024–2025)

description: Survey data from 118 Spanish ‘Gala’ table-apple growers, combining a discrete choice experiment (DCE) on varietal traits with incentivised risk-lottery tasks grounded in Cumulative Prospect Theory (CPT). Collected October 2024–January 2025 in the provinces of Lleida, Huesca, Girona, and Zaragoza (Spain). Includes farm and farmer characteristics, DCE choices (varietal trait preferences), and CPT-based risk attitude parameters.
DOI: 10.5281/zenodo.17285559
title: Sustainability Trait Preferences and Risk Attitudes among Spanish 'Gala' Apple Growers (2024–2025)

description: Survey data from 118 Spanish ‘Gala’ table-apple growers, combining a discrete choice experiment (DCE) on varietal traits with incentivised risk-lottery tasks grounded in Cumulative Prospect Theory (CPT). Collected October 2024–January 2025 in the provinces of Lleida, Huesca, Girona, and Zaragoza (Spain). Includes farm and farmer characteristics, DCE choices (varietal trait preferences), and CPT-based risk attitude parameters.
DOI: 10.15468/dl.mnvjsy
title: Occurrence Download

description: A dataset containing 20195 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Clarias olivaceus, Hemibagrus lacustrinus, Osteochilus jeruk, Osteochilus serokan, Osteochilus enneaporos, Betta raja, Crossocheilus gnathopogon, Hemibagrus velox, Kryptopterus palembangensis, Neolissochilus sumatranus, Neolissochilus thienemanni, Sundolyra latebrosa, Rasbora leptosoma, Rasbora tawarensis, Paedocypris progenetica, Helicophagus typus, Osteochilus borneensis, Rasborichthys helfrichii, Balitoropsis ophiolepis, Neolissochilus longipinnis, Schismatorhynchos heterorhynchos, Helicophagus waandersii, Rasbora reticulata, Rasbora vulcanus, Hyalobagrus flavus, Hampala ampalong, Pangasius kunyit, Homalopterula gymnogaster, Kryptopterus piperatus, Nemacheilus tuberigum, Rasbora bindumatoga, Akysis heterurus, Gymnochanda limi, Luciocephalus aura, Parosphromenus gunawani, Parosphromenus sumatranus, Pseudobagarius macronemus, Mystus bimaculatus, Homalopterula modiglianii, Betta cracens, Cynoglossus hardenbergi, Glyptothorax amnestus, Parosphromenus phoenicurus, Rasbora tobana, Rasbora nematotaenia, Homalopterula ripleyi, Crossocheilus obscurus, Pangasius polyuranodon, Hemibagrus hoevenii, Gastromyzon auronigrus, Gastromyzon cornusaccus, Melanotaenia mamahensis, Hyphessobrycon georgettae, Tatia creutzbergi, Chasmocranus surinamensis, Paralithoxus pallidimaculatus, Geophagus brokopondo, Leporinus apollo, Metaloricaria nijsseni, Moenkhausia surinamensis, Boraras naevus, Coregonus maxillaris, Coregonus trybomi, Coregonus zuerichensis, Petroleuciscus squaliusculus, Alburnus oblongus, Schizothorax taliensis, Hypsolebias auratus, Anablepsoides roraima, Luciobarbus lanigarensis, Candidia barbata, Opsariichthys pachycephalus, Sinogastromyzon puliensis, Aphyocypris moltrechti, Opsariichthys kaopingensis, Metzia mesembrinum, Squalidus iijimae, Xenocypris medius, Salanx acuticeps, Spinibarbus hollandi, Acrossocheilus labiatus, Paratanakia himantegus, Hemimyzon formosanus, Paratanakia chii, Candidia pingtungensis, Metzia formosae, Barbatula liaoyangensis, Jenynsia luxata, Rasbora dies, Dzihunia turdakovi, Triplophysa paradoxa, Brachygalaxias gothei, Placocheilus bibarbatus, Placocheilus imbarbatus, Chaetostoma palmeri, Haludaria afasciata, Haludaria kannikattiensis, Pethia sharmai, Neolissochilus tamiraparaniensis)",
 "HasCoordinate is true",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 20195 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057942-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17286373
title: Advancing Chlamydia trachomatis genomic surveillance and research with a novel core-genome MLST (cgMLST) approach (Supplementary material)

description: This repository contains the supplementary data and genome assemblies generated in the frame of the study: "Exploring Chlamydia trachomatis global genomic diversity with a novel core-genome MLST (cgMLST) approach" by Lodhia et al. 2025.

 

In this repository you will find:



"Assemblies.zip" - In this folder there are the 327 assemblies generated by this study, including the the 57 newly sequenced isolates from Portugal.

"Supplementary_files.zip" - In this folder there are all Supplementary files generated by this study and that served as source data for the main and supplementary figures.

"Supplementary_figures.zip"* - In this folder there are all Supplementary figures generated by this study.


*In this folder you will also find an interactive HTML version for the main Figure 3B, as well as for Supplementary Figure S6.

 

Citation

If you use this schema or the provided datasets in your work, please cite:



Zohra Lodhia, Verónica Mixão, Joana Isidro, Rita Ferreira, Dora Cordeiro, Cristina Correia, Inês João, João Paulo Gomes, Maria José Borrego and Vítor Borges (2025) Advancing Chlamydia trachomatis genomic surveillance and research with a novel core-genome MLST (cgMLST) approach. Research Square. doi: 10.21203/rs.3.rs-7743240/v1

This repository


 

Funding

This work was funded by national funds through FCT - Foundation for Science and Technology, I.P., in the frame of Individual CEEC 2022.00851.CEECIND/CP1748/CT0001 (doi: 10.54499/2022.00851.CEECIND/CP1748/CT0001) and of the doctoral fellowship SFRH/BD/147446/2019 (doi: 10.54499/SFRH/BD/147446/2019), and by the European Union project “Sustainable use and integration of enhanced infrastructure into routine genome-based surveillance and outbreak investigation activities in Portugal” - GENEO [101113460] on behalf of the EU4H programme [EU4H-2022-DGA-MS-IBA-01-02].