cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc28zz5f
title: CCDC 2115135: Experimental Crystal Structure Determination

description: Related Article: Qingying Yang, Jiawei Zhang, Limin Wang|2022|Dyes Pigm.|198|110024|doi:10.1016/j.dyepig.2021.110024
DOI: 10.5517/ccdc.csd.cc291qqt
title: CCDC 2116826: Experimental Crystal Structure Determination

description: Related Article: Linmin Zou, Song Guo, Hongying Lv, Feixia Chen, Lingzhong Wei, Yongyang Gong, Yuanli Liu, Chun Wei|2022|Dyes Pigm.|198|109958|doi:10.1016/j.dyepig.2021.109958
DOI: 10.5517/ccdc.csd.cc292b6y
title: CCDC 2117399: Experimental Crystal Structure Determination

description: Related Article: Yanyan Wang, Dongxiang Zhang, Jie Wang, Dongmei Xi, Zhangrun Xu, Xin-Dong Jiang, Jianjun Du|2022|Dyes Pigm.|198|110026|doi:10.1016/j.dyepig.2021.110026
DOI: 10.6084/m9.figshare.11549352
title: Modelling nitrogen and phosphorus recovery potential by Ulva fasciata

description: This study investigated the nitrogen and phosphorus uptake efficiency and recovery potential by the cosmopolitan macroalga <i>Ulva fasciata</i>. An equation to estimate biomass production, as well nitrogen and phosphorus recovery, by <i>Ulva</i> species is further proposed. Results showed that <i>U. fasciata</i> removed 99 % of nitrogen (NH<sub>4</sub>-NO<sub>3</sub>) and 22 % of phosphate dissolved in water. Tissue nitrogen, phosphorus and chlorophyll-<i>a</i> increased 73, 20 and 244 %, respectively, demonstrating rapid assimilation of nutrients fueling <i>U. fasciata</i>’s growth (5.69 % day<sup>-1</sup>). The constructed equation correlating fresh weight and area showed that 0.21- and 11.35-tons ha<sup>-1</sup> year<sup>-1</sup> of phosphorus and nitrogen could be recovered and that 3.47 tons of dry biomass could be produced. Tissue data add to the understanding of physiological effects of nutrient availability in <i>U. fasciata</i>. The efficient removal of dissolved nitrogen and phosphorus represents an important ecosystem service with potential for production of value-added by-products.<br>
DOI: 10.6084/m9.figshare.11549352.v2
title: Modelling nitrogen and phosphorus recovery potential by Ulva fasciata

description: This study investigated the nitrogen and phosphorus uptake efficiency and recovery potential by the cosmopolitan macroalga <i>Ulva fasciata</i>. An equation to estimate biomass production, as well nitrogen and phosphorus recovery, by <i>Ulva</i> species is further proposed. Results showed that <i>U. fasciata</i> removed 99 % of nitrogen (NH<sub>4</sub>-NO<sub>3</sub>) and 22 % of phosphate dissolved in water. Tissue nitrogen, phosphorus and chlorophyll-<i>a</i> increased 73, 20 and 244 %, respectively, demonstrating rapid assimilation of nutrients fueling <i>U. fasciata</i>’s growth (5.69 % day<sup>-1</sup>). The constructed equation correlating fresh weight and area showed that 0.21- and 11.35-tons ha<sup>-1</sup> year<sup>-1</sup> of phosphorus and nitrogen could be recovered and that 3.47 tons of dry biomass could be produced. Tissue data add to the understanding of physiological effects of nutrient availability in <i>U. fasciata</i>. The efficient removal of dissolved nitrogen and phosphorus represents an important ecosystem service with potential for production of value-added by-products.<br>
DOI: 10.6084/m9.figshare.11549352.v1
title: Modelling nitrogen and phosphorus recovery potential by Ulva fasciata

description: This study investigated the nitrogen and phosphorus uptake efficiency and recovery potential by the cosmopolitan macroalga <i>Ulva fasciata</i>. An equation to estimate biomass production, as well nitrogen and phosphorus recovery, by <i>Ulva</i> species is further proposed. Results showed that <i>U. fasciata</i> removed 99 % of nitrogen (NH<sub>4</sub>-NO<sub>3</sub>) and 22 % of phosphate dissolved in water. Tissue nitrogen, phosphorus and chlorophyll-<i>a</i> increased 73, 20 and 244 %, respectively, demonstrating rapid assimilation of nutrients fueling <i>U. fasciata</i>’s growth (5.69 % day<sup>-1</sup>). The constructed equation correlating fresh weight and area showed that 0.21- and 11.35-tons ha<sup>-1</sup> year<sup>-1</sup> of phosphorus and nitrogen could be recovered and that 3.47 tons of dry biomass could be produced. Tissue data add to the understanding of physiological effects of nutrient availability in <i>U. fasciata</i>. The efficient removal of dissolved nitrogen and phosphorus represents an important ecosystem service with potential for production of value-added by-products.<br>
DOI: 10.6073/pasta/60779c5313bf1967e45f911479882963
title: Juvenile Salmonid Emigration Monitoring in the Stanislaus River at Caswell Memorial State Park, California.

description: Overview Operation of rotary screw traps on the lower Stanislaus River at Caswell Memorial State Park is part of the U.S Fish and Wildlife Service’s Anadromous Fish Restoration Program and Comprehensive Assessment and Monitoring Program under the National Marine Fisheries Service Reasonable and Prudent Alternatives actions and Central Valley Project Improvement Act. The primary objectives of the study are to collect data that can be used to estimate the passage of juvenile fall-run Chinook Salmon Oncorhynchus tshawytscha and to quantify the raw catch of steelhead Oncorhynchus mykiss. Secondary objectives of the trapping operations focus on collecting biological data on juvenile salmonids and gathering environmental data that will be used to develop models that correlate environmental parameters with salmonid size, temporal presence, abundance, and production. The data package contains seven datasets including: raw catch, trap operation, environmental, and trap efficiency data. Raw Catch – Chinook Dataset This dataset covers ALL Chinook Salmon captured by the rotary screw traps. This spreadsheet includes biological data on: 1) unmarked fall- and spring-run Chinook Salmon 2) recaptured marked fall-run (BBY OR "Pigment / Dye", Photonic Dye, Fin Clip, and VIE OR "Elastomer") Chinook Salmon utilized in trap efficiency trials. Raw Catch – Steelhead Dataset This dataset covers ALL steelhead captured by the rotary screw traps. All steelhead captured are unmarked and presumed to be natural origin steelhead. Raw Catch – ByCatch Dataset This dataset provides biological data on ALL catch (EXCLUDING Chinook Salmon or steelhead) captured by the rotary screw traps. All catch in this table is of natural origin. Trap Operations Dataset This dataset provides trap operation data for each trap visit. Specifically, it includes data on the visit type, trap functioning status, start and end sampling dates and times, total revolutions and instantaneous revolution speeds, livewell intake statuses, debris data, and whether the catch associated for this record will be include for juvenile production estimates. Environmentals Dataset This dataset covers environmental data collected at the rotary screw traps. This spreadsheet includes turbidity (nephelometric turbidity units), water velocity (meters per second), dissolved oxygen (milligrams per liter), and water depth (centimeters). Trap Efficiency Summary Dataset This dataset provides a summary of each trap efficiency trial conducted. It includes the release date and time, the length of the test, the number of marked fish released and recaptured, and whether the trial was included for juvenile production estimates. Trap Efficiency Release FL Dataset This dataset provides biological data on a subsample of released fish utilized in trap efficiency trials.
DOI: 10.5281/zenodo.6382957
title: The translational landscape of SARS-CoV-2 and infected cells reveals suppression of innate immune genes

description: SARS-CoV-2 utilizes a number of strategies to modulate viral and host mRNA translation. Here, we used ribosome profiling in SARS-CoV-2 infected model cell lines and primary airway cells grown at the air-liquid interface to gain a deeper understanding of the translationally regulated events in response to virus replication. We find that SARS-CoV-2 mRNAs dominate the cellular mRNA pool but are not more efficiently translated than cellular mRNAs. SARS-CoV-2 utilized a highly efficient ribosomal frameshifting strategy despite notable accumulation of ribosomes within the slippery sequence on the frameshifting element. In the highly permissive cell models, although SARS-CoV-2 infection induced the transcriptional upregulation of numerous chemokines, cytokines and interferon stimulated genes, many of these mRNAs were not translated efficiently. Impact of SARS-CoV-2 on host mRNA translation was more subtle in primary cells, with marked transcriptional and translational upregulation of inflammatory and innate immune responses and downregulation of processes involved in ciliated cell function. Together, these data reveal the key role of mRNA translation in SARS-CoV-2 replication and highlight unique mechanisms for therapeutic development. The processed data presented here is derived from the relevant RNA-seq and ribo-seq libraries.
DOI: 10.5281/zenodo.5762479
title: The translational landscape of SARS-CoV-2 and infected cells reveals suppression of innate immune genes

description: SARS-CoV-2 utilizes a number of strategies to modulate viral and host mRNA translation. Here, we used ribosome profiling in SARS-CoV-2 infected model cell lines and primary airway cells grown at the air-liquid interface to gain a deeper understanding of the translationally regulated events in response to virus replication. We find that SARS-CoV-2 mRNAs dominate the cellular mRNA pool but are not more efficiently translated than cellular mRNAs. SARS-CoV-2 utilized a highly efficient ribosomal frameshifting strategy despite notable accumulation of ribosomes within the slippery sequence on the frameshifting element. In the highly permissive cell models, although SARS-CoV-2 infection induced the transcriptional upregulation of numerous chemokines, cytokines and interferon stimulated genes, many of these mRNAs were not translated efficiently. Impact of SARS-CoV-2 on host mRNA translation was more subtle in primary cells, with marked transcriptional and translational upregulation of inflammatory and innate immune responses and downregulation of processes involved in ciliated cell function. Together, these data reveal the key role of mRNA translation in SARS-CoV-2 replication and highlight unique mechanisms for therapeutic development. The processed data presented here is derived from the relevant RNA-seq and ribo-seq libraries.
DOI: 10.6084/m9.figshare.13678999.v1
title: WETFEET: Mangrove growth responses to warming across a latitudinal gradient.csv

description: In the southeastern US, Avicennia germinans (black mangrove) is encroaching poleward due to warming temperatures and a decrease in annual freee events. To understand how warming will continue to impact mangrove encroachment, we deployed open-top passive warming chambers at three sites along the northeast coast of Florida encompassed by the Guana Tolomato Matanzas National Estuarine Research Reserve. Mangrove height and canopy widths were measured in each of the 36 plots (3 sites x 2 treatments x 6 replicates) at the outset of the experiment in May 2018 and then again in November 2018 (6 months) and in May 2019 (1 year). Plant height was measured to the tallest branch. Canopy width was measured at the widest dimension and then again at the dimension perpendicular from the first measurement. <br>In each plot, two PVC rings were placed over existing salt marsh vegetation. In August 2018, we measured the height and number of stems (stem density) of each species present in the biomass rings. All biomass was then cut at the base for allometric measurements in the lab. This process was repeated in August 2019.
DOI: 10.5281/zenodo.6380890
title: Microstructure and velocity data collected near Velasco Reef during the June 2016 FLEAT field program

description: Data used in Wynne-Cattanach et al paper, "Measurements of turbulence generated by wake eddies near a steep headland"
DOI: 10.6084/m9.figshare.16834542
title: Discovery of novel antischistosomal scaffolds from the open access Pandemic Response Box

description: Treatment and control of schistosomiasis rely on a single drug, praziquantel. New orally active antischistosomals featuring novel molecular scaffolds are urgently needed to prevent the emergence of resistance. We screened 400 drug-like compounds contained in the open-access Pandemic Response Box (PRB) against newly transformed schistosomula (NTS) at a concentration of 10 µM scoring death, changes in motility, and morphological alterations. Compounds displaying an activity ≥66% at 72 h underwent testing against adult <i>Schistosoma mansoni in vitro</i>. Fast-acting (≥66% at 24 h), nontoxic drugs focusing on late-stage and approved drugs were investigated in the patent <i>S. mansoni</i> mouse model. We identified 26 hits active against NTS, of which 17 elicited ≥66% activity against adult <i>S. mansoni</i> following 24 h of drug exposure. The highest activity against <i>adult S. mansoni</i> was observed with MMV1581558 (EC<sub>50</sub> value of 0.18 ± 0.01 µM) and nitazoxanide (0.47 ± 0.07 µM). Of the five compounds tested <i>in vivo</i>, MMV1581558 and the approved drug ozanimod reduced average worm burden versus controls by 42 % and 36 %, respectively, after a single oral dose of 200 mg/kg bodyweight in mice harboring a chronic <i>S. mansoni</i> infection. MMV1581558 discovered from screening the PRB represents a novel antischistosomal scaffold with high <i>in vitro</i> antischistosomal activity amenable to chemical modification for drug development.
DOI: 10.6084/m9.figshare.16915965
title: Systematic Review and Meta-Analysis: Efficacy of Vancomycin Taper and Pulse Regimens in Clostridioides difficile Infection

description: Vancomycin is the drug of choice for treating <i>Clostridioides difficile</i> infection (CDI). We compare CDI resolution with vancomycin taper, pulse, and taper-and-pulse regimens. We searched for Medline, Embase, Cochrane, and Scopus through October 9<sup>th</sup>, 2020. Taper regimen was defined as dose reduction over time; pulse was a regimen less frequent than daily. Studies assessing CDI resolution rates were included. Meta-analyses for resolution rates were performed using weighted proportion ratios (WPR). Ten studies with 675 patients treated with vancomycin regimens were included. Resolution rates were 83% (212/266, 95% CI 69–94%, <i>I<sup>2</sup> </i>= 85%) for taper-and-pulse, 68% (264/383, 95% CI 57–78%, <i>I<sup>2</sup> = </i>72%) for taper alone, and 54% (11/26 95% CI 0–100%, <i>I<sup>2</sup> = </i>86%) for pulse alone regimens. Taper-and-pulse was superior to taper alone (WPR 83% vs 68%, p Limitations of our analysis are a small number of included studies and heterogeneity. Vancomycin taper-and-pulse seems superior to pulse alone or taper alone for recurrent CDI. A randomized controlled trial comparing vancomycin taper-and-pulse to fidaxomicin and microbiome restoration is needed.
DOI: 10.6084/m9.figshare.16915965.v1
title: Systematic Review and Meta-Analysis: Efficacy of Vancomycin Taper and Pulse Regimens in Clostridioides difficile Infection

description: Vancomycin is the drug of choice for treating <i>Clostridioides difficile</i> infection (CDI). We compare CDI resolution with vancomycin taper, pulse, and taper-and-pulse regimens. We searched for Medline, Embase, Cochrane, and Scopus through October 9<sup>th</sup>, 2020. Taper regimen was defined as dose reduction over time; pulse was a regimen less frequent than daily. Studies assessing CDI resolution rates were included. Meta-analyses for resolution rates were performed using weighted proportion ratios (WPR). Ten studies with 675 patients treated with vancomycin regimens were included. Resolution rates were 83% (212/266, 95% CI 69–94%, <i>I<sup>2</sup> </i>= 85%) for taper-and-pulse, 68% (264/383, 95% CI 57–78%, <i>I<sup>2</sup> = </i>72%) for taper alone, and 54% (11/26 95% CI 0–100%, <i>I<sup>2</sup> = </i>86%) for pulse alone regimens. Taper-and-pulse was superior to taper alone (WPR 83% vs 68%, p Limitations of our analysis are a small number of included studies and heterogeneity. Vancomycin taper-and-pulse seems superior to pulse alone or taper alone for recurrent CDI. A randomized controlled trial comparing vancomycin taper-and-pulse to fidaxomicin and microbiome restoration is needed.
DOI: 10.5281/zenodo.6382956
title: Clinical Dataset SE objects - GSE14671

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE14671
DOI: 10.5281/zenodo.6382955
title: Clinical Dataset SE objects - GSE14671

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE14671
DOI: 10.5281/zenodo.6382959
title: Clinical Dataset SE objects - GSE14764

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE14764
DOI: 10.5281/zenodo.6382958
title: Clinical Dataset SE objects - GSE14764

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE14764
DOI: 10.5281/zenodo.6382972
title: Clinical Dataset SE objects - GSE15622

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE15622
DOI: 10.5281/zenodo.6382971
title: Clinical Dataset SE objects - GSE15622

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE15622
DOI: 10.5281/zenodo.6382975
title: Clinical Dataset SE objects - GSE20194

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE20194
DOI: 10.5281/zenodo.6382974
title: Clinical Dataset SE objects - GSE20194

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE20194
DOI: 10.5281/zenodo.6382984
title: Clinical Dataset SE objects - GSE23554

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE23554
DOI: 10.5281/zenodo.6382983
title: Clinical Dataset SE objects - GSE23554

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE23554
DOI: 10.5281/zenodo.6382988
title: Clinical Dataset SE objects - GSE25066

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE25066
DOI: 10.5281/zenodo.6382987
title: Clinical Dataset SE objects - GSE25066

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE25066
DOI: 10.5281/zenodo.6383000
title: Clinical Dataset SE objects - GSE33072

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE33072
DOI: 10.5281/zenodo.6382999
title: Clinical Dataset SE objects - GSE33072

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE33072
DOI: 10.5281/zenodo.6383003
title: Clinical Dataset SE objects - GSE41998

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE41998
DOI: 10.5281/zenodo.6383002
title: Clinical Dataset SE objects - GSE41998

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE41998
DOI: 10.5281/zenodo.6271103
title: Datasets produced by SCALE-GM in QBO-like oscillation experiments.

description: Data produced by SCALE-GM and used in the manuscript submitted to the AMS journal Monthly Weather Review. Authors: <br> Hiroki Kashimura, Hisashi Yashiro, Seiya Nishizawa, Hirofumi Tomita, Kensuke Nakajima, Masaki Ishiwatari, Yoshiyuki O. Takahashi, and Yoshi-Yuki Hayashi<br> Corresponding Author:<br> Hiroki Kashimura (hiroki@gfd-dennou.org)<br> Manuscript Title:<br> Dependence of a QBO-like oscillation on time-step intervals in a non-hydrostatic general circulation model See README.txt for more details.
DOI: 10.5281/zenodo.6271102
title: Datasets produced by SCALE-GM in QBO-like oscillation experiments.

description: Data produced by SCALE-GM and used in the manuscript submitted to the AMS journal Monthly Weather Review. Authors: <br> Hiroki Kashimura, Hisashi Yashiro, Seiya Nishizawa, Hirofumi Tomita, Kensuke Nakajima, Masaki Ishiwatari, Yoshiyuki O. Takahashi, and Yoshi-Yuki Hayashi<br> Corresponding Author:<br> Hiroki Kashimura (hiroki@gfd-dennou.org)<br> Manuscript Title:<br> Dependence of a QBO-like oscillation on time-step intervals in a non-hydrostatic general circulation model See README.txt for more details.
DOI: 10.5281/zenodo.6383028
title: Clinical Dataset SE objects - GSE50948

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE50948
DOI: 10.5281/zenodo.6383027
title: Clinical Dataset SE objects - GSE50948

description: Curated clinical datasets for Roche collaboration, Task 4a. Data source - GSE50948
DOI: 10.13020/pt2w-sh61
title: Materials to re-create Coastal trapped waves: normal modes, evolution equations, and topographic generation
DOI: 10.5281/zenodo.6383007
title: Supplementary file

description: Descriptive statistics (e.g., mean, median, standard deviation, percentile) of each variable extracted from Principal Component Analysis for each exercise cluster in elite professional female futsal players.
description: None.
DOI: 10.5281/zenodo.6383006
title: Supplementary file

description: Descriptive statistics (e.g., mean, median, standard deviation, percentile) of each variable extracted from Principal Component Analysis for each exercise cluster in elite professional female futsal players.
description: None.