cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21153493
title: Data Analysis folder for Anchoring in the football transfer market: The effect of the world record transfer

description: A folder of all resources used in the data analysis of "Anchoring in the football transfer market: The effect of the world record transfer".
DOI: 10.6084/m9.figshare.21153493.v1
title: data analysis.zip

description: A folder of all resources used in the data analysis of "Anchoring in the football transfer market: The effect of the world record transfer".
DOI: 10.6084/m9.figshare.21201262
title: Raw data and figure scripts from Mechanism for turbulence proliferation in subcritical flows

description: The subcritical transition to turbulence, as occurs in pipe flow, is believed to generically be a phase transition in the directed percolation universality class. At its heart is a balance between the decay rate and proliferation rate of localized turbulent structures, called puffs in pipe flow. Here, we propose the first-ever dynamical mechanism for puff proliferation—the process by which a puff splits into two. In the first stage of our mechanism, a puff expands into a slug. In the second stage, a laminar gap is formed within the turbulent core. The notion of a split-edge state, mediating the transition from a single puff to a two puff state, is introduced and its form is predicted. The role of fluctuations in the two stages of the transition, and how splits could be suppressed with increasing Reynolds number, are discussed. Using numerical simulations, the mechanism is validated within the stochastic Barkley model. Concrete predictions to test the proposed mechanism in pipe and other wall-bounded flows, and implications for the universality of the directed percolation picture, are discussed.
DOI: 10.6084/m9.figshare.21201262.v1
title: Raw data and figure scripts from Mechanism for turbulence proliferation in subcritical flows

description: The subcritical transition to turbulence, as occurs in pipe flow, is believed to generically be a phase transition in the directed percolation universality class. At its heart is a balance between the decay rate and proliferation rate of localized turbulent structures, called puffs in pipe flow. Here, we propose the first-ever dynamical mechanism for puff proliferation—the process by which a puff splits into two. In the first stage of our mechanism, a puff expands into a slug. In the second stage, a laminar gap is formed within the turbulent core. The notion of a split-edge state, mediating the transition from a single puff to a two puff state, is introduced and its form is predicted. The role of fluctuations in the two stages of the transition, and how splits could be suppressed with increasing Reynolds number, are discussed. Using numerical simulations, the mechanism is validated within the stochastic Barkley model. Concrete predictions to test the proposed mechanism in pipe and other wall-bounded flows, and implications for the universality of the directed percolation picture, are discussed.
DOI: 10.6084/m9.figshare.21201290
title: Experimental dataset from Impact of a rigid sphere onto an elastic membrane

description: Trajectories of the impacting spheres.
DOI: 10.6084/m9.figshare.21201290.v1
title: Experimental dataset from Impact of a rigid sphere onto an elastic membrane

description: Trajectories of the impacting spheres.
DOI: 10.34740/kaggle/dsv/4243807
title: YouTube Daily
DOI: 10.6084/m9.figshare.21201347
title: Supplement Table 1 from Colour patterns influence symbiosis and competition in the anemonefish-host anemone symbiosis system

description: Original data: The duration (sec.) of aggressive behavior of Amphiprion ocellaris
DOI: 10.6084/m9.figshare.21201347.v1
title: Supplement Table 1 from Colour patterns influence symbiosis and competition in the anemonefish-host anemone symbiosis system

description: Original data: The duration (sec.) of aggressive behavior of Amphiprion ocellaris
DOI: 10.20375/0000-000f-7423-7
title: Documentation-Data-Collection+Results.pdf
DOI: 10.20375/0000-000f-7424-6
title: Oxf0522.sav
DOI: 10.20375/0000-000f-7425-5
title: Oxf0522.xlsx
DOI: 10.20375/0000-000f-7426-4
title: questionnaire.pdf
DOI: 10.5281/zenodo.5529711
title: SwissJudgmentPrediction

description: <pre>SwissJudgmentPrediction is a multilingual, diachronic dataset of 85K Swiss Federal Supreme Court (FSCS) cases annotated with the respective binarized judgment outcome (approval/dismissal), posing a challenging text classification task. We also provide additional metadata, i.e., the publication year, the legal area and the canton of origin per case, to promote robustness and fairness studies on the critical area of legal NLP.</pre>
DOI: 10.5281/zenodo.5529712
title: SwissJudgmentPrediction

description: <pre>SwissJudgmentPrediction is a multilingual, diachronic dataset of 85K Swiss Federal Supreme Court (FSCS) cases annotated with the respective binarized judgment outcome (approval/dismissal), posing a challenging text classification task. We also provide additional metadata, i.e., the publication year, the legal area and the canton of origin per case, to promote robustness and fairness studies on the critical area of legal NLP.</pre>
DOI: 10.5281/zenodo.7109926
title: SwissJudgmentPrediction

description: <pre>SwissJudgmentPrediction is a multilingual, diachronic dataset of 85K Swiss Federal Supreme Court (FSCS) cases annotated with the respective binarized judgment outcome (approval/dismissal), posing a challenging text classification task. We also provide additional metadata, i.e., the publication year, the legal area and the canton of origin per case, to promote robustness and fairness studies on the critical area of legal NLP.</pre>
DOI: 10.6084/m9.figshare.20973790
title: Dataset_Stable plant community biomass production despite species richness collapse under lasting extreme climate change

description: Local plant species loss and the corresponding change of aboveground biomass by actively pushing grassland ecosystems beyond their ecological thresholds in a five-year, multisite translocation experiment across the European Alps.
DOI: 10.6084/m9.figshare.20973790.v1
title: Stable plant community biomass production despite species richness collapse under lasting extreme climate change

description: Local plant species loss and the corresponding change of aboveground biomass by actively pushing grassland ecosystems beyond their ecological thresholds in a five-year, multisite translocation experiment across the European Alps.
DOI: 10.6084/m9.figshare.20973790.v2
title: Dataset_Stable plant community biomass production despite species richness collapse under lasting extreme climate change

description: Local plant species loss and the corresponding change of aboveground biomass by actively pushing grassland ecosystems beyond their ecological thresholds in a five-year, multisite translocation experiment across the European Alps.
DOI: 10.6084/m9.figshare.21197479.v1
title: Martynenko et al., 2022 Cryptomonas terrestris Table S1

description: This table contains names of species, strains, their SSU, LSU+ITS2 rDNA and psbA cpDNA Accession Numbers in GenBank, and also country, habitat and source of their origin.
DOI: 10.6084/m9.figshare.21201404
title: Supplementary Material: Re-analysis of Redbait FO in comparison with Kirkwood et al. 2008 from Environmental correlates of temporal variation in the prey species of Australian fur seals inferred from scat analysis

description: Online link for code for re-analysis of Kirkwood et al and this study
DOI: 10.6084/m9.figshare.21201404.v1
title: Supplementary Material: Re-analysis of Redbait FO in comparison with Kirkwood et al. 2008 from Environmental correlates of temporal variation in the prey species of Australian fur seals inferred from scat analysis

description: Online link for code for re-analysis of Kirkwood et al and this study
DOI: 10.6084/m9.figshare.21201407
title: Supplementary Material: GAM fits to FO & diagnostic plots for each species from Environmental correlates of temporal variation in the prey species of Australian fur seals inferred from scat analysis

description: Online link for code used for analysis
DOI: 10.6084/m9.figshare.21201407.v1
title: Supplementary Material: GAM fits to FO & diagnostic plots for each species from Environmental correlates of temporal variation in the prey species of Australian fur seals inferred from scat analysis

description: Online link for code used for analysis
DOI: 10.5519/qd.kgrm29wb
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.20375/0000-000f-7428-2
title: Documentation-Data-Collection+Results.pdf
DOI: 10.20375/0000-000f-7429-1
title: Oxf0522.sav
DOI: 10.20375/0000-000f-742a-0
title: Oxf0522.xlsx
DOI: 10.20375/0000-000f-742b-f
title: questionnaire.pdf
DOI: 10.6084/m9.figshare.21201389
title: Source codes from Efficient bending and lifting patterns in snake locomotion

description: We optimize three-dimensional snake kinematics for locomotor efficiency. We assume a general space-curve representation of the snake backbone with small-to-moderate lifting off the ground and negligible body inertia. The cost of locomotion includes work against friction and internal viscous dissipation. When restricted to planar kinematics, our population-based optimization method finds the same types of optima as a previous Newton-based method. With lifting, a few types of optimal motions prevail. We have an
DOI: 10.6084/m9.figshare.21201389.v1
title: Source codes from Efficient bending and lifting patterns in snake locomotion

description: We optimize three-dimensional snake kinematics for locomotor efficiency. We assume a general space-curve representation of the snake backbone with small-to-moderate lifting off the ground and negligible body inertia. The cost of locomotion includes work against friction and internal viscous dissipation. When restricted to planar kinematics, our population-based optimization method finds the same types of optima as a previous Newton-based method. With lifting, a few types of optimal motions prevail. We have an
DOI: 10.5281/zenodo.7110001
title: Replication package for "Does Communist Nostalgia Lead to COVID-19 Conspiracy Beliefs?"

description: Replication package for the paper “Does Communist Nostalgia Lead to COVID-19 Conspiracy Beliefs?” accepted for publication at European Societies. The package contains the survey data and the R code.
DOI: 10.5281/zenodo.6768737
title: Data from the Mikhnevo GO

description: For data processing, we use the Matlab package. SR parameter values are in the file: SR data of GO Mikhnevo.mat This is a binary file of the Matlab package. It contains 2 structures. The name of each structure contains the name of the channel - “Hx” or “Hy”. Within each structure are the following fields: T0m - date in Matlab format Tvec - vector of time in seconds since the beginning of the day in T0m. A0_avg - matrix with amplitudes of the first 4 SR modes F_avg - matrix with frequencies of the first 4 SR modes Q_avg - matrix with Q-factors of the first 4 SR modes Magnetic data obtained in the Mikhnevo GO are in the file: Magnetic data of GO Mikhnevo.mat It contains: t­ - time vector in seconds from the beginning of the day 01/15/2022 Bf - total magnetic field vector (nT)
DOI: 10.6084/m9.figshare.21151075
title: Parasitic manipulation, or side-effects? The effects of past Toxoplasma and Borrelia infections on personality and cognitive performance of humans are not mediated by impaired health - Data set

description: Data set for the paper Bacteria <em>Borrelia burgdorferi</em> <em>s. l.</em>, and especially protozoan <em>Toxoplasma gondii</em>, are known to affect the behavior of their animal and human hosts. Both pathogens infect a large fraction of humans, and both survive in the host’s organism for a very long time. The resulting latent infections were considered asymptomatic from a clinical point of view. However, in the last decade, a growing number of studies has shown that this view may be wrong and that both infections can have many adverse effects on the health of patients. Therefore, the specific behavioral effects of the infections might be just side-effects of the general impairment of the health of patients. Here we tested this hypothesis on the cohort of 7,762 members of the internet population using a 2-hours survey consisting of a panel of questionnaires and performance tests. We confirmed that subjects infected with <em>Toxoplasma</em> had worse physical and mental health and those infected with <em>Borrelia</em> had worse physical health than the corresponding controls. Infected and noninfected subjects also differed in several personality traits (conscientiousness, pathogen disgust, injury disgust, Machiavellianism, narcissism, tribalism, anti-authoritarianism, intelligence, reaction time, and precision). Most of the behavioral effects associated with <em>Borrelia</em> infection were the same as those associated with <em>Toxoplasma </em>infection; however, some of them dramatically differed, e.g., the performance in the Stroop test. Path analyses and nonparametric partial Kendall correlation tests showed that these effects were not mediated by the impaired health of the infected individuals. The results therefore contradicted the predictions of the side-effects hypothesis. Keywords: toxoplasmosis; borreliosis; manipulation hypothesis; big five; dark triad; disgust; Stroop test; Meili test; memory; intelligence; political attitudes; side-effects hypothesis
DOI: 10.6084/m9.figshare.21201364
title: Dataset of the interviews with Mongolian qualified and trainee teachers of Mandarin Chinese

description: This dataset is the recordings of the interviews with Mongolian qualified and trainee teachers of Mandarin Chinese, collected between May and July in Hohhot 2018, as part of a research project to investigate the history of teaching Mandarin to Mongolians as a second language and its implications to the present day. <br> To ensure no harm, the research project was rigorously reviewed through the University of Nottingham Faculty of Arts ethical approval process prior to undertaking fieldwork.
DOI: 10.6084/m9.figshare.21201442
title: MyRF mice Behavioural and immunohistochemistry data

description: Morris watermaze training and 28-day probe behavioural and immunhistochemistry data from MyRF mice administered 7,8-dihydroxyflavone hydrate (7,8-DHF) following each training session (seven training days, one sesion per day ; i.p injection 5mg/kg). Het -hemizygous control, Hom -cKO of new oligodendrocytes, DHF -cKO mice adminstered 7,8-DHF.
DOI: 10.6084/m9.figshare.21201442.v1
title: MyRF mice Behavioural and immunohistochemistry data

description: Morris watermaze training and 28-day probe behavioural and immunhistochemistry data from MyRF mice administered 7,8-dihydroxyflavone hydrate (7,8-DHF) following each training session (seven training days, one sesion per day ; i.p injection 5mg/kg). Het -hemizygous control, Hom -cKO of new oligodendrocytes, DHF -cKO mice adminstered 7,8-DHF.
DOI: 10.6084/m9.figshare.21115900
title: SI File 1. from Fossil basicranium clarifies the origin of the avian central nervous system and inner ear

description: Specimens used in this study, angles, body mass and sources
DOI: 10.6084/m9.figshare.21200083
title: blank

description: blank
DOI: 10.6084/m9.figshare.21200083.v2
title: Hammond_et-al_2019_Dataset_Objects

description: Datsets from: Hammond TR, Dufort C, Dissing-Olesen L, Giera S, Young A, Wysoker A, Walker AJ, Gergits F, Segel M, Nemesh J, Marsh SE, Saunders A, Macosko E, Ginhoux F, Chen J, Franklin RJM, Piao X, McCarroll SA, Stevens B (2019). Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes. <em><strong>Immunity</strong></em><strong>,</strong> 50(1):253–271.e6. doi.org/10.1016/j.immuni.2018.11.004. PMID: 30471926. <br>
DOI: 10.6084/m9.figshare.21200083.v3
title: blank

description: blank
DOI: 10.20375/0000-000f-742d-d
title: Documentation-Data-Collection+Results.pdf
DOI: 10.20375/0000-000f-742e-c
title: Oxf0522.sav
DOI: 10.20375/0000-000f-742f-b
title: Oxf0522.xlsx
DOI: 10.20375/0000-000f-7430-8
title: questionnaire.pdf
DOI: 10.6084/m9.figshare.21114661
title: Field recording de-noise settings from Syntactic modulation of rhythm in Australian pied butcherbird song

description: iZotope RX8 module chain preset for de-noising field recordings
DOI: 10.6084/m9.figshare.21114661.v1
title: Field recording de-noise settings from Syntactic modulation of rhythm in Australian pied butcherbird song

description: iZotope RX8 module chain preset for de-noising field recordings
DOI: 10.6084/m9.figshare.21201457
title: MyRF mice behavioural and immunohistochemistry data

description: Morris watermaze training and 28-day probe behavioural and immunhistochemistry data from MyRF mice administered 7,8-dihydroxyflavone hydrate (7,8-DHF) following each training session (seven training days, one sesion per day ; i.p injection 5mg/kg). Het -hemizygous control, Hom -cKO of new oligodendrocytes, DHF -cKO mice adminstered 7,8-DHF.
DOI: 10.6084/m9.figshare.21201457.v1
title: MyRF mice behavioural and immunohistochemistry data

description: Morris watermaze training and 28-day probe behavioural and immunhistochemistry data from MyRF mice administered 7,8-dihydroxyflavone hydrate (7,8-DHF) following each training session (seven training days, one sesion per day ; i.p injection 5mg/kg). Het -hemizygous control, Hom -cKO of new oligodendrocytes, DHF -cKO mice adminstered 7,8-DHF.
DOI: 10.6084/m9.figshare.21153547.v1
title: Diagnosis and functional prediction of microbial marker in tumor tissues of sporadic colorectal cancer patients associated with MLH1 protein phenotype

description: Analysis of tumor-associated microbiota in sporadic colorectal cancer patients with different MLH1 status
DOI: 10.6084/m9.figshare.21201463.v1
title: Hammon_et-al_2019_Microglia_Seurat_Objects

description: Seurat Single cell objects for data in: Hammond TR, Dufort C, Dissing-Olesen L, Giera S, Young A, Wysoker A, Walker AJ, Gergits F, Segel M, Nemesh J, Marsh SE, Saunders A, Macosko E, Ginhoux F, Chen J, Franklin RJM, Piao X, McCarroll SA, Stevens B (2019). Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes. <em><strong>Immunity</strong></em><strong>,</strong> 50(1):253–271.e6. doi.org/10.1016/j.immuni.2018.11.004. PMID: 30471926.
DOI: 10.6084/m9.figshare.21031053
title: TableS3.xlsx from Exploring differential exon usage via short- and long-read RNA sequencing strategies

description: Alternative splicing produces various mRNAs, and thereby various protein products, from one gene, impacting a wide range of cellular activities. However, accurate reconstruction and quantification of full-length transcripts using short-reads is limited, due to their length. Long-reads sequencing technologies may provide a solution by sequencing full-length transcripts. We explored the use of both Illumina short-reads and two long Oxford Nanopore Technology (cDNA and Direct RNA) RNA-Seq reads for detecting global differential splicing during mouse embryonic stem cell differentiation, applying several bioinformatics strategies: gene-based, isoform-based and exon-based. We detected the strongest similarity among the sequencing platforms at the gene level compared to exon-based and isoform-based. Furthermore, the exon-based strategy discovered many differential exon usage (DEU) events, mostly in a platform-dependent manner and in non-differentially expressed genes. Thus, the platforms complemented each other in the ability to detect DEUs, i.e. long-reads exhibited an advantage in detecting DEUs at the 3׳ UTRs, and short-reads detected more DEUs. Exons within 20 genes, detected in one or more platforms, were here validated by PCR, including key differentiation genes, such as Mdb3 and Aplp1. We provide an important analysis resource for discovering transcriptome changes during stem cell differentiation and insights for analysing such data.
DOI: 10.6084/m9.figshare.21031056
title: TableS7.xlsx from Exploring differential exon usage via short- and long-read RNA sequencing strategies

description: Alternative splicing produces various mRNAs, and thereby various protein products, from one gene, impacting a wide range of cellular activities. However, accurate reconstruction and quantification of full-length transcripts using short-reads is limited, due to their length. Long-reads sequencing technologies may provide a solution by sequencing full-length transcripts. We explored the use of both Illumina short-reads and two long Oxford Nanopore Technology (cDNA and Direct RNA) RNA-Seq reads for detecting global differential splicing during mouse embryonic stem cell differentiation, applying several bioinformatics strategies: gene-based, isoform-based and exon-based. We detected the strongest similarity among the sequencing platforms at the gene level compared to exon-based and isoform-based. Furthermore, the exon-based strategy discovered many differential exon usage (DEU) events, mostly in a platform-dependent manner and in non-differentially expressed genes. Thus, the platforms complemented each other in the ability to detect DEUs, i.e. long-reads exhibited an advantage in detecting DEUs at the 3׳ UTRs, and short-reads detected more DEUs. Exons within 20 genes, detected in one or more platforms, were here validated by PCR, including key differentiation genes, such as Mdb3 and Aplp1. We provide an important analysis resource for discovering transcriptome changes during stem cell differentiation and insights for analysing such data.
DOI: 10.6084/m9.figshare.21031053.v2
title: TableS3.xlsx from Exploring differential exon usage via short- and long-read RNA sequencing strategies

description: Alternative splicing produces various mRNAs, and thereby various protein products, from one gene, impacting a wide range of cellular activities. However, accurate reconstruction and quantification of full-length transcripts using short-reads is limited, due to their length. Long-reads sequencing technologies may provide a solution by sequencing full-length transcripts. We explored the use of both Illumina short-reads and two long Oxford Nanopore Technology (cDNA and Direct RNA) RNA-Seq reads for detecting global differential splicing during mouse embryonic stem cell differentiation, applying several bioinformatics strategies: gene-based, isoform-based and exon-based. We detected the strongest similarity among the sequencing platforms at the gene level compared to exon-based and isoform-based. Furthermore, the exon-based strategy discovered many differential exon usage (DEU) events, mostly in a platform-dependent manner and in non-differentially expressed genes. Thus, the platforms complemented each other in the ability to detect DEUs, i.e. long-reads exhibited an advantage in detecting DEUs at the 3׳ UTRs, and short-reads detected more DEUs. Exons within 20 genes, detected in one or more platforms, were here validated by PCR, including key differentiation genes, such as Mdb3 and Aplp1. We provide an important analysis resource for discovering transcriptome changes during stem cell differentiation and insights for analysing such data.