cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.j9dxhr
title: Occurrence Download

description: A dataset containing 590 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Danio rerio (Hamilton, 1822)"
 ]
}

 The dataset includes 590 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222881-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rsxeat
title: Occurrence Download

description: A dataset containing 35075 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Accipitridae",
 "Country is Norway",
 "DatasetKey is Norwegian Species Observation Service",
 "Year is 2016",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 35075 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001631-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.un7baf
title: Occurrence Download

description: A dataset containing 949 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parashorea Kurz"
 ]
}

 The dataset includes 949 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222882-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.owjffk
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gerbillus dasyurus (Wagner, 1842)"
 ]
}

 The dataset includes 247 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001631-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytfjh2
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gyrodontium arizonicum (Ginns) Zmitr., Kalinovskaya & Myasnikov",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133280-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.louwk5
title: Occurrence Download

description: A dataset containing 18083 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia mearnsii De Wild."
 ]
}

 The dataset includes 18083 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025482-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ydz5c
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cameroon",
 "TaxonKey is Plagiosiphon Harms"
 ]
}

 The dataset includes 182 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0417352-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysc3dd
title: Occurrence Download

description: A dataset containing 15612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is A global database for the distributions of crop wild relatives",
 "Country is Guatemala"
 ]
}

 The dataset includes 15612 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129287-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ug9yha
title: Occurrence Download

description: A dataset containing 1076 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caracal caracal (Schreber, 1776)"
 ]
}

 The dataset includes 1076 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025487-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38quwg
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Ambystoma mexicanum (Shaw & Nodder, 1798)",
 "Year 1950-2023"
 ]
}

 The dataset includes 139 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205342-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjfdsc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "TaxonKey is Sachatamia ilex (Savage, 1967)",
 "Year 1000-1982"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098672-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.egeddc
title: Occurrence Download

description: A dataset containing 247726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Year 2020-2022"
 ]
}

 The dataset includes 247726 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154285-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pavkvn
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia gedrosiaca Rech.f., Aellen & Esfand."
 ]
}

 The dataset includes 31 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205335-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7zg3y
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-38.88702370226383 -10.109252971597018,-38.55743385851383 -10.109252971597018,-38.55743385851383 -9.779663127847018,-38.88702370226383 -9.779663127847018,-38.88702370226383 -10.109252971597018))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anodorhynchus leari Bonaparte, 1856"
 ]
}

 The dataset includes 45 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222943-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3omt3l
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Branchinecta mesovallensis Belk & Fugate, 2000"
 ]
}

 The dataset includes 161 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001555-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kpmvbd
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asterodiaspis variolosa (Ratzeburg, 1870)",
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128749-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7tomj
title: Occurrence Download

description: A dataset containing 300230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sri Lanka",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 300230 records from 304 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025490-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kadac8
title: Occurrence Download

description: A dataset containing 690087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-66.51123 -7.9541,-56.79492 -7.9541,-56.79492 5.8689,-66.51123 5.8689,-66.51123 -7.9541))",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 690087 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094456-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v9k6jx
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Ambystoma mexicanum (Shaw & Nodder, 1798)",
 "Year 1950-2023"
 ]
}

 The dataset includes 139 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205330-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.34rehu
title: Occurrence Download

description: A dataset containing 8919 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyla eximia Baird, 1854"
 ]
}

 The dataset includes 8919 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011261-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30111703.v1
title: code.7z

description: Fracture Spontaneous Imbibition Code
DOI: 10.6084/m9.figshare.30111703
title: code.7z

description: Fracture Spontaneous Imbibition Code
DOI: 10.17026/dans-27b-a4ph
title: Poortvliet Paasdijkweg-Lageweg Poortvliet Paasdijkweg Lageweg. Gemeente Tholen. Inventariserend Veldonderzoek door middel van Proefsleuven

description: &lt;p&gt;Artefact! Advies en Onderzoek in Erfgoed heeft in juni 2020 een Inventariserend Veldonderzoek door middel van proefsleuven uitgevoerd voor het plangebied Paasdijkweg Lageweg te Poortvliet (gemeente Tholen). De opdrachtgever is voornemens om op de hoek van de Paasdijkweg en de Lageweg te Poortvliet nieuwbouwwoningen te realiseren. Fase 1 van projectplan Wonen bij de Molen werd inmiddels ontwikkeld, Fase 2 is momenteel in voorbereiding (huidig plangebied).&lt;/p&gt;&lt;p&gt;Op basis van het bureauonderzoek en verkennende booronderzoek gold voor het plangebied een lage verwachting op het aantreffen van vindplaatsen uit het Neolithicum en de Bronstijd. Voor de IJzertijd en Romeinse Tijd gold een hoge verwachting gezien een veraarde veentop werd vastgesteld. Voor de Middeleeuwen en Nieuwe Tijd gold een middelhoge verwachting op het aantreffen van vindplaatsen, in de top van het Laagpakket van Walcheren in de vorm van een oude vegetatiehorizont. Aan de noordzijde van het plangebied konden tevens resten van een afwateringskanaal van de Korenmolen worden aangetroffen.&lt;/p&gt;&lt;p&gt;Tijdens het proefsleuvenonderzoek werd in totaal 346 m2 onderzocht. Er werden negen proefsleuven aangelegd ter hoogte van de nieuwbouwlocaties teneinde vast te stellen of er behoudenswaardige vindplaatsen in het plangebied aanwezig waren. In de top van het Hollandveen Laagpakket werden, met uitzondering van een natuurlijk gevuld geultje, geen vindplaatsen aangetroffen. In het Laagpakket van Walcheren werd een greppel gevonden die gedateerd wordt in de Nieuwe tijd. Deze resten werden zowel op basis van hun fysieke als inhoudelijke aspecten als niet-behoudenswaardig gewaardeerd.&lt;/p&gt;
DOI: 10.25549/usctheses-ouc11399lo3q
title: Environmental Moderation of Genetic Influences on Dementia Risk in Mexican Older Adults
DOI: 10.5281/zenodo.17095023
title: Supporting data for "UBE2J2 sensitizes the ERAD ubiquitination cascade to changes in membrane lipid saturation"

description: This dataset contains all the data needed to recreate the MD simulations and analysis described in the paper 'UBE2J2 sensitizes the ERAD ubiquitination cascade to changes in membrane lipid saturation'.

 

All steps are detailed in Bash and SLURM scripts. All path definitions have been adapted to the folder structure described below, although we may have missed some, so please double-check.

 

The folder structure is as follows:

supporting_data
├─ simulations   └─ <system>       ├─sysbuilder       └─postprocess         └─<replicate>
├─ structures├─ scripts   └─analysis
├─ mdp_files└─ packmem

The 'simulations' folder contains data for molecular dynamics (MD) simulations.  The system folder can be ER, 10SFA or 60SFA, indicating the corresponding lipid composition.  The "sysbuilder" folder contains the necessary files and instructions to generate the simulation system. This process is detailed in gen_topology_insane.sh.

The 'postprocess' folder contains the processed trajectories after the water molecules have been removed and the periodic boundary conditions (PBC) artefacts resolved. This process is detailed in supporting_data/scripts/jobscript_postprocess.sbatch. To reduce file size, the timestep of the uploaded trajectories was increased from 1 ns to 10 ns. The original trajectories can be obtained from the authors upon reasonable request. The simulation files are stored in the rep1-rep10 subfolders.

 

The 'structures' subfolder contains the input structure. 

 

The 'scripts' subfolder contains all the scripts used to perform the simulations and analyse the results.

 

The 'params' subfolder contains all the simulation parameter files (MDP files) and the Martini3 parameters used for packmem.
DOI: 10.5281/zenodo.17095024
title: Supporting data for "UBE2J2 sensitizes the ERAD ubiquitination cascade to changes in membrane lipid saturation"

description: This dataset contains all the data needed to recreate the MD simulations and analysis described in the paper 'UBE2J2 sensitizes the ERAD ubiquitination cascade to changes in membrane lipid saturation'.

 

All steps are detailed in Bash and SLURM scripts. All path definitions have been adapted to the folder structure described below, although we may have missed some, so please double-check.

 

The folder structure is as follows:

supporting_data
├─ simulations   └─ <system>       ├─sysbuilder       └─postprocess         └─<replicate>
├─ structures├─ scripts   └─analysis
├─ mdp_files└─ packmem

The 'simulations' folder contains data for molecular dynamics (MD) simulations.  The system folder can be ER, 10SFA or 60SFA, indicating the corresponding lipid composition.  The "sysbuilder" folder contains the necessary files and instructions to generate the simulation system. This process is detailed in gen_topology_insane.sh.

The 'postprocess' folder contains the processed trajectories after the water molecules have been removed and the periodic boundary conditions (PBC) artefacts resolved. This process is detailed in supporting_data/scripts/jobscript_postprocess.sbatch. To reduce file size, the timestep of the uploaded trajectories was increased from 1 ns to 10 ns. The original trajectories can be obtained from the authors upon reasonable request. The simulation files are stored in the rep1-rep10 subfolders.

 

The 'structures' subfolder contains the input structure. 

 

The 'scripts' subfolder contains all the scripts used to perform the simulations and analyse the results.

 

The 'params' subfolder contains all the simulation parameter files (MDP files) and the Martini3 parameters used for packmem.
DOI: 10.15468/dl.3cdkd5
title: Occurrence Download

description: A dataset containing 1854 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.29820089029677",
 "DecimalLongitude is less than 7.30126044348116",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1854 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024200-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgzfbn
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Crypsirina cucullata Jerdon, 1862"
 ]
}

 The dataset includes 387 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024201-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4asuhy
title: Occurrence Download

description: A dataset containing 1652 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.30126044348116",
 "DecimalLongitude is less than 7.30431999666555",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1652 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024202-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tc3syg
title: Occurrence Download

description: A dataset containing 1605 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.30431999666555",
 "DecimalLongitude is less than 7.30737954984995",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1605 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024203-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/ntga-d274
title: Design of a Transoral Laryngeal Surgery Robot Based on Rigid-flexible Coupling Structure

description: Master-slave surgical robot has gained significant attention in minimally invasive surgery because of their dexterity and eye-hand coordination. In this paper, a transoral surgical robot based on rigid-flexible coupling structure is designed. The flexible manipulator with an outer diameter of 4mm and multi-axis rigid manipulator are combined to form the slave side, and force-feedback controlling devices are adopted as the master side. A band-limited multiple Fourier linear combiner algorithm based on input weight(Iw-BMFLC) is introduced for the reduction of physiological tremor on the master side and the phase delay in the process of tremor reduction can be effectively addressed. Based on the incremental mapping algorithm, a control strategy and a user interface are developed. To improve the motion accuracy, a polynomial-based kinematic modeling approach is designed in this paper and the continuum-based flexible manipulator is kinematically calibrated to carry out the trajectory planning experiment. Results of the real experiments demonstrate the effectiveness of the proposed kinematic model when completing trajectory planning tasks, especially compared to the constant curvature model. In the end, animal experiments are also conducted by master–slave teleoperation to verify the force capability and dexterity of the robot.
DOI: 10.15468/dl.kj9e4u
title: Occurrence Download

description: A dataset containing 1410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.30737954984995",
 "DecimalLongitude is less than 7.31043910303434",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1410 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024204-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rk5jkt
title: Occurrence Download

description: A dataset containing 1505 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.31043910303434",
 "DecimalLongitude is less than 7.31349865621874",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1505 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024205-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6eraj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Betula gynoterminalis Y.C.Hsu & C.J.Wang"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024207-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.