cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1601967749
title: iNEXT Discovery-Instruct ESRF-ERIC; Structural biology for translational research and discovery.

description: The aim of this proposal is to provide user access to automated protein-to-structure and fragment screening pipelines based on the combination of EMBL HTX lab services and CrystalDirect technology and automated data collection at ESRF’s MX beamlines. Access modalities will include 1) Online-Crystallography (Protein-to-Structure pipeline) 2) Large-Scale ligand and Fragment Screening and 3) new Plate-to-beam data collection modalities enabled by the integration of CrystalDirect at MASSIF1. User access to these modalities will require competitive application and peer-review through the E.C. funded iNEXT Discovery and Instruct-ERIC consortia. Moreover, new approaches for high density ligand screening will be implemented and the experimental opportunities enabled by the Integration of CrystalDirect at the MASSIF-1 station will be further developed. This work will be carried out in the context of international collaborative projects.
DOI: 10.15468/dl.99488u
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limassolla multipunctata (Matsumura, 1920)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 29 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210632-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1643260488
title: Multi-scale tomography of marine species

description: Multi-scale tomography of marine species in the frame of the IMAGINE consortium
DOI: 10.15468/dl.2wks4m
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Chinese Taipei, Hong Kong, Macao)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tamarix chinensis Lour."
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003905-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1580435042
title: Crystallographic studies of natural, mutant and artificial metalloenzymes and metalloproteins

description: We want to use high-resolution crystallography to continue or do new fundamental research on: 1) the oxygen-sensitivity of metalloenzymes and metalloproteins; 2)
maturation proteins involved in the biosynthesis of metal sites in hydrogenases and nitrogenase; 3) SAM radical enzymes; 4) the biological assembly of iron-sulfur
clusters; 5) the role of quinolinate synthase in NAD biosynthesis; 6) transduction of signals like oxygen and NO by Fe-S cluster-dependent transcriptional regulators.
Our main goal is to understand the structure-function relationships of these proteins and to decipher their mechanisms. More distant goals include the design and
production of improved enzymes, facilitating their use for biotechnological applications.
DOI: 10.15468/dl.rudxe6
title: Occurrence Download

description: A dataset containing 419 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Corydoras hastatus Eigenmann & Eigenmann, 1888)"
 ]
}

 The dataset includes 419 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013950-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbt26a
title: Occurrence Download

description: A dataset containing 730 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Periophthalmus barbarus (Linnaeus, 1766)"
 ]
}

 The dataset includes 730 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0313349-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8u7ukz
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum radens Sonck"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008178-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1476123351
title: Belgium BAG

description: The Belgium BAG includes groups situated at four Flemish universities: Antwerpen, Brussels, Ghent and Leuven. The proposed projects are highly diverse, including viral, prokaryotic and eukaryotic proteins with a strong focus on targets and processes of biomedical relevance. Many projects deal with membrane proteins, cell surface receptors and protein-protein complexes. Central to the research in the BAG associated groups is the employment of integrative methods in structural biology combining X-ray crystallography, SAXS, and electron microscopy. Many crystals in the various proposed projects are small in size and radiation sensitive, requiring the use of the high brilliance MX beam lines, preferably with micro-focused X-rays.
DOI: 10.15468/dl.fmjkze
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thecodiplosis japonensis Uchida & Inouye, 1955",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0368616-210914110416597/datasets/export for details.
DOI: 10.15151/esrf-es-1530272226
title: The Israeli BAG

description: The Israeli BAG plans to increase its usage of ESRF in the coming year. We are having more projects that utilize the ESRF single crystal capabilities as well as the continuous increase in SAXS time. As mentioned last year It is not trivial to provide a summary that covers all research topics encompassed by the BAG. We expect some BAG members to resume using ESRF after utilizing other facilities. As much as we appreciate the immense capacities of ESRF, the majority of BAG members are discontent (to say the least) regarding the post-shutdown/Covid-19 travel regulations imposed by the management. It seems that bureaucracy rather than common sense is prevailing and an accompanying letter will be submitted adjoined to the proposal/report. I have not included any requests for ID29 as the BAG members have to become more familiarized with the facility. As for some of the BAG projects, a detailed description is provided in the Global Summary below.
DOI: 10.15151/esrf-es-1636364005
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: This proposal clusters crystallography and bioSAXS projects at the EMBL Grenoble, IBS-CIBB and IAB. It combines groups working on different topics with a major focus on cell signaling proteins, drug discovery, long non-coding RNAs, nucleic acid-protein complexes, and host-pathogen interactions. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and biological small angle X-ray scattering and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (i.e. Soleil, Petra III, and Diamond). As Stephen Cusack (former head of EMBL Grenoble) will be retiring at the end of 2023 we propose to change the BAG responsible to Andrew McCarthy for this application round.
DOI: 10.15468/dl.uv64ys
title: Occurrence Download

description: A dataset containing 438 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum pyropappum Boiss. & Reut."
 ]
}

 The dataset includes 438 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008170-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1554153867
title: Molecular mechanisms underlying the prominent DNA double-strand breaks (DSBs) repair pathway, the NHEJ (non-homologous end joining)

description: The aim of our project is to decipher the molecular mechanisms underlying the prominent DNA double-strand breaks (DSBs) repair pathway, the NHEJ (non-homologous end joining). No repaired DSBs can led to cell death, chromosomal aberration or immunodeficiency syndromes. NHEJ starts with DSB recognition by the heterodimeric protein Ku that recruits the processing factors (nucleases, polymerases) and the ligase complex to end with DNA ligation (Zahid et al 2021).
We are mainly focus on the structural studies of long-range to short-range synaptic transition in S. cerevisiae NHEJ, as a model of study. An additional aim to unveil the architecture of key DNA-protein complexes involved in this budding yeast NHEJ is to compare it with the human system Chaplin et al 2021, Nemoz et al 2018)from an evolutionary point of view.
DOI: 10.15151/esrf-es-1640862728
title: Austrian Crystallographic Diffraction Consortium

description: The Austrian Crystallographic Diffraction Consortium (ACDC) BAG aims at supporting several macromolecular structural biology groups across Austria (in total 20 research groups at 9 institutions in 4 cities). We employ mainly the technique of X-ray crystallography to characterize macromolecular biological complexes, but also solution scattering approaches are frequently used to characterize dynamic assemblies. Approval of this BAG will be essential for researchers in all our groups to carry out their structural studies on various health-related and basic research-oriented topics, which are targeted at characterizing large molecular assemblies or proteins currently under-represented in the PDB, including membrane proteins. Corresponding high-resolution diffraction data are only obtainable through the use of synchrotron radiation sources. Thus regular synchrotron access is highly desirable to maintain a competitive advantage in our individual research fields.
DOI: 10.15151/esrf-es-1600542406
title: IBS BAG

description: The IBS BAG includes in this proposal IBS teams and external groups from CEA-Cadarache (St Paul lez Durance) and IRBA (Brétigny-sur-Orge). We study structure-function relationships of proteins emphasizing in human health, biotechnology and methodology. Most of the projects are a continuation of the MX-2498 proposal and can be grouped into different topics as follows: host-pathogen interaction, new therapy targets, fundamental cellular mechanisms, membrane proteins, biotechnological applications and methodology. Some of these projects use integrative approaches (X-ray crystallography, cryo-EM, SAXS and NMR), together with other biophysical and biochemical studies, and very recently the use of AI, with the aim to fully understand the complexity of the biological macromolecular systems under study.
DOI: 10.15468/dl.23wj5h
title: Occurrence Download

description: A dataset containing 358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ditrichum lineare (Sw.) Lindb.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 358 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239470-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1554153866
title: Stress distribution in the solidified melt pool of L-PBF manufactured Al alloys : effect of microstructure and consequences on thermal trea

description: New high performances aluminum alloys used for additive manufacturing are designed in order to benefit from the very high cooling rate offered by the process. Nevertheless their sensitivity to cracking during processing or post-processing need to be better understood and adressed. This proposal aims at quantifying, thanks to 3D µLaue profiles, the stress distribution as a function of the microstructure in the solidified melt pool. By changing the Zr content in the alloy, the volume fraction of equiaxed zone is monitored. The evolution of stress distribution as a function of the thermal treatment applied will be quantified by 3D µLaue profiles before and after an ex situ thermal treatment. The results will be confronted to already performed: intensive macroscopic mechanical tests, in situ SEM mechanical tests and in situ nano-tomography mechanical tests.
DOI: 10.15151/esrf-es-1554155175
title: Solid solution engineering of functional molecular ceramics

description: Molecular ceramics are crystalline materials made of small molecular constituents that possess technologically useful phase transitions and functional properties such as piezo and ferroelectricity. The study investigate the tuning of phase transition temperatures, enthalpy and functional properties by solid solution formation, using in situ powder diffraction to study the formation characteristics of single phases in pseudo-binary molecular systems. The study will look at phase formation in isothermal conditions, incongruent melting behaviour on cooling and the role of mesophases. We will identify the composition’s influence on phase transition temperature, structural symmetry, molecular re-orientation frustration and extend of frozen molecular disorder and as a function of composition and temperature. The study will produce phase equilibria diagrams for several novel molecular ceramics systems which stand as protypes for ionic molecular ceramic plastic crystals.
DOI: 10.15468/dl.78q5t2
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Telipogon urceolatus C.Schweinf."
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010563-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1554155228
title: Elucidation of the structure of unmodified and modified cotton fibers by X-ray nanodiffraction with unpredecented resolution

description: Cotton fibers have a significant global socio-economic impact. Yet, cotton growth and fiber post-processing are among the most unsustainable agro-industrial sectors globally. Among the several sustainable alternatives currently being explored, we pioneered the concept of material farming with a specific focus on cotton plants. Cotton plants are regarded as living factories to (re)design cellulose-based material with tailored properties. Recently, we demonstrated that feeding in vitro-grown cotton with glucose derivatives carrying an azide group results in their biological incorporation into cotton fibers with a heterogenous distribution while modulating the fibers' end properties, such as tensile properties. In the proposed project, we aim to explore the structure-properties relations behind the cotton fibers and those that were biologically modified using wide-angle X-ray scattering (WAXS) by making use of the ESRF X-ray beamline uniqueness.
DOI: 10.15151/esrf-es-1554155232
title: Non-destructive REE determination by high-energy sub-micro XRF in aqueous alteration products and fluid bubbles and veins in the water-rich

description: The aim of this experiment is to investigate, in a non-destructive manner, the rare-earth element (REE) abundance and obtained concentration trends (e.g. light REE vs high REE, REE anomalies) in intense aqueously altered and fluid-rich regions found inside unique samples of the Winchcombe and Northwest Africa 6693 meteorites. These Ca, P-rich regions of interest correspond to the calcium phosphate minerals apatite and merrillite, which contain trace amounts (1-10 ppm) of REEs like Y and the lanthanide series (La-Lu). Quantified REE values normalised to early Solar System abundances reveal concentration trends which hint at which stage fluids started to mobilise on the water-rich parent bodies of these meteorites.
DOI: 10.15468/dl.9ckhtm
title: Occurrence Download

description: A dataset containing 358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ditrichum lineare (Sw.) Lindb.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 358 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239471-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1554170001
title: Polymorphism in carbonic acid: structural analysis and stability field up to beyond 50 GPa

description: This proposal is aimed at exploring the structural feature and the stability field of carbonic acid polymorphs under high pressure conditions (above 50 GPa), particularly focusing on the characterization of their phase transitions. The study addresses fundamental issues about carbonic acid and is relevant to astrochemical purposes and to fundamental chemistry regarding binary ice mixtures.
DOI: 10.5281/zenodo.11083351
title: Zusatzdatei zur Eignungsanalyse des MII-Kerndatensatzes zur Entwicklung von Vorhersagemodellen bei akuten Hitzeereignissen
DOI: 10.5281/zenodo.11083352
title: Zusatzdatei zur Eignungsanalyse des MII-Kerndatensatzes zur Entwicklung von Vorhersagemodellen bei akuten Hitzeereignissen
DOI: 10.15468/dl.c3nmfq
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Telipogon williamsii P.Ortiz"
 ]
}

 The dataset includes 38 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010581-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.juap8w
title: Occurrence Download

description: A dataset containing 935547 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Month is July",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2022-2022"
 ]
}

 The dataset includes 935547 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013943-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gu478d
title: Occurrence Download

description: A dataset containing 450 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ditrichum zonatum (Brid.) Kindb., Dolichopoda geniculata (Costa, 1860))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 450 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239475-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1601967655
title: iNEXT Discovery-Instruct ESRF-ERIC; Structural biology for translational research and discovery.

description: The aim of this proposal is to provide user access to automated protein-to-structure and fragment screening pipelines based on the combination of EMBL HTX lab services and CrystalDirect technology and automated data collection at ESRF’s MX beamlines. Access modalities will include 1) Online-Crystallography (Protein-to-Structure pipeline) 2) Large-Scale ligand and Fragment Screening and 3) new Plate-to-beam data collection modalities enabled by the integration of CrystalDirect at MASSIF1. User access to these modalities will require competitive application and peer-review through the E.C. funded iNEXT Discovery and Instruct-ERIC consortia. Moreover, new approaches for high density ligand screening will be implemented and the experimental opportunities enabled by the Integration of CrystalDirect at the MASSIF-1 station will be further developed. This work will be carried out in the context of international collaborative projects.