cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5gk51p0/2
title: Data Set 2 (Martha et al. 2018)_Glen Rose and Walnut cyclostome bryozoans

description: Geographical and stratigraphic details for collection sites of bryozoan material from the Glen Rose and Walnut formations of northcentral Texas, USA.
DOI: 10.5061/dryad.5jq5t36/2
title: Reads of Sequenced Mock Samples

description: raw data of Mock Samples sequenced on the Illumina MiSeq Plattform. Split by Mock Sample Pool, Primers Used, Library Preparation Protocol, and Replicate number
DOI: 10.5061/dryad.5qj120q/1
title: Alignment of COI sequences of data set A

description: Alignment of 741 DNA sequences of the 5'-end of the cytochrome c oxidase subunit I gene (COI, 652 bp) obtained in this study (data set A). Labels indicate the sequence ID, the (morpho)species identification, the voucher unique ID and the molecular operational taxonomic unit (MOTU) identifier obtained using four methods (ABGD, RESL, GMYC and bPTP).
DOI: 10.5061/dryad.5qj120q/2
title: Alignment of COI sequences of data set A+B

description: Alignment of 932 DNA sequences of the 5'-end of the cytochrome c oxidase subunit I gene (COI, 652 bp) obtained in this study (741 sequences) and retrieved from public repositories (191 sequences which were collected in the same part of the Congolese drainage system) (data set A+B). Labels indicate the sequence ID, the (morpho)species identification, the voucher unique ID and the molecular operational taxonomic unit (MOTU) identifier obtained using three methods (ABGD, GMYC and bPTP).
DOI: 10.5061/dryad.6235783/1
title: Correlational_study

description: This file contains all the variables used to analyze whether the status of parasitism of a nest in a given year t depends on (host or parasite) fledgling production or patch parasitism rate in the surroundings of that nest in the previous year t-1.
DOI: 10.5061/dryad.6235783/2
title: Experimental_study

description: This file contains all the variables to analyze whether the probability of parasitism of a nest in year t was related to the status of parasitism of nests in the patch before to carry out an experiment of modification of host and parasite reproductive success in year t-1, or to host and parasite fledgling rate in the patch after the experiment in year t-1.
DOI: 10.5061/dryad.8004g37/1
title: Data Hibernation_Repro_number

description: Here we show hibernation data collected from 75 edible dormice kept in enclosures over 11 years. We recorded the hibernation duration (absence from nest-boxes) from 126 females  and 163 males. Additionally, we recorded body mass prior and after hibernation, age, age at death (somewhat smaller data set), diet and whether the animals invested into reproduction or not.
DOI: 10.5061/dryad.8004g37/2
title: Data Repro_Females_number

description: Here we show data about the weaning success (number of weaned juveniles) of 13 female dormice (28 litters) kept in enclosures in Vienna, Austria. Additionally, we recorded body mass in spring (after hibernation), diet, age and age at death.
DOI: 10.5061/dryad.82rv8q9
title: Data from: Resource dispersion promotes kin selection in a solitary predator
DOI: 10.5061/dryad.8n183/2
title: Kenward-et-al_RADA_Gray-squirrels_Elton

description: Data used to infer the resource needs of gray squirrels (Sciurus carolinensis) in Elton Estate, southern UK. Inference was made by applying Resource-Area-Dependence Analysis (RADA) to a sample of 17 gray squirrel home ranges and a thematic map depicting resource distribution. The compressed archive contains the two datasets: i) standardized 30 locations per home range obtained via VHF telemetry during July 1989 and 2) the thematic map containing six classes digitized from aerial photography. All coordinates are in UK National Grid format (EPSG 27700). Each dataset is provided as: (i) .txt (locations) and .shp (vector map) and (ii) .loc (locations) and .ves (vector map). Formats in (ii) are native to the Ranges suite of software (http://www.anatrack.com/home.php) for the analysis of animal home ranging and habitat use. Since its first release in 1990, Ranges has been used in analyses underpinning dozens of publications in scientific journals (ex. http://www.anatrack.com/publications.php). The release of the latest version, Ranges 9, was used for RADA outputs in this paper. A DEMO of Ranges 9, which allows for opening and visualizing the data files provided herein, is available for download without charge (http://www.anatrack.com/try_ranges.php). RADA itself is available in the full Ranges 9 version (http://www.anatrack.com/ranges_compare_versions.php).
DOI: 10.5061/dryad.8n183/3
title: Kenward-et-al_RADA_Red-squirrels_Furzey-Island

description: Data used to infer the resource needs of red squirrels (Sciurus vulgaris) in Furzey Island, southern UK. Inference was made by applying Resource-Area-Dependence Analysis (RADA) to a sample of 15 red squirrel home ranges and a thematic map depicting resource distribution. The compressed archive contains the two datasets: i) standardized 30 locations per home range obtained via VHF telemetry between October 1991 and January 1992 and 2) the thematic map containing two map classes digitized from aerial photography. All coordinates are in UK National Grid format (EPSG 27700). Each dataset is provided as: (i) .txt (locations) and .shp (vector map) and (ii) .loc (locations) and .ves (vector map). Formats in (ii) are native to the Ranges suite of software (http://www.anatrack.com/home.php) for the analysis of animal home ranging and habitat use. Since its first release in 1990, Ranges has been used in analyses underpinning dozens of publications in scientific journals (ex. http://www.anatrack.com/publications.php). The release of the latest version, Ranges 9, was used for RADA outputs in this paper. A DEMO of Ranges 9, which allows for opening and visualizing the data files provided herein, is available for download without charge (http://www.anatrack.com/try_ranges.php). RADA itself is available in the full Ranges 9 version (http://www.anatrack.com/ranges_compare_versions.php).
DOI: 10.5061/dryad.c394c12/1
title: Rawdata_phenotypic_responses
DOI: 10.5061/dryad.c394c12/2
title: DNA sequences SP and SPR exon 6
DOI: 10.5061/dryad.c50hm00/1
title: Transcriptome assemblies

description: Assemblies for transcriptomes generated by this study and sra files downloaded from NCBI
DOI: 10.5061/dryad.fq24fr3/1
title: Data Set 1 (Martha et al. 2018)_Glen Rose and Walnut gymnolaemate bryozoans

description: Non-type material of new cheilostome bryozoan species from the Glen Rose and Walnut formations of southcentral and northcentral Texas, USA.
DOI: 10.5061/dryad.g28rh86/1
title: DataS1

description: File list (files found within DataS1.zip): 
	sample_metadata.txt
	python_calling_genotypes.py
	RAD_genotypes.txt
	
File descriptions: 
sample_metadata.txt – contains sample names and associated metadata (date of sample collection, geographic location of sampling, and experimental treatment group). 

python_calling_genotypes.py – python script that takes individual tags.tsv files created by pstacks (version 1.29) and uses a minimum sequencing depth threshold to designate individual genotypes. 

RAD_genotypes.txt – a dataframe of genotypes (in genepop format) that was used in the final analyses of this paper.
DOI: 10.5061/dryad.gc632bc/1
title: RDST_data_2000

description: Body temperature and migration depth histories for RDST-tagged adult Chinook salmon and steelhead in 2000.  All fish were collected at Bonneville Dam and were associated with  Snake River populations.  See README file for data details.
DOI: 10.5061/dryad.gc632bc/2
title: RDST_data_2002

description: Body temperature and migration depth histories for RDST-tagged adult Chinook salmon and steelhead in 2002.  All fish were collected at Bonneville Dam and were associated with  Snake River populations.  See README file for data details.
DOI: 10.5061/dryad.gc632bc/3
title: RDST_fish_summaries

description: Summary data for each fish and reach, including tag and final fate details and reach-specific fish body temperature metrics.
DOI: 10.5061/dryad.gc632bc/4
title: WQM_water_temperature_data

description: Mean daily Columbia and Snake River water temperature data collected at dams by the U.S. Army Corps of Engineers and used in the study.
DOI: 10.5061/dryad.hh42t4j/21
title: w501xII2P1_5
DOI: 10.5061/dryad.hh42t4j/22
title: w501xII2P2_1
DOI: 10.5061/dryad.hh42t4j/23
title: w501xII2P2_2
DOI: 10.5061/dryad.hh42t4j/24
title: w501xII2P2_3
DOI: 10.5061/dryad.hh42t4j/25
title: w501xII2P2_4
DOI: 10.5061/dryad.hh42t4j/26
title: w501xII2P3_1
DOI: 10.5061/dryad.hh42t4j/27
title: w501xII2P3_2
DOI: 10.5061/dryad.hh42t4j/28
title: w501xII2P3_3
DOI: 10.5061/dryad.jc247v3/1
title: ConfeitoGUI_1.2.0.2
DOI: 10.5061/dryad.jc247v3/2
title: athgxmat

description: Arabidopsis thaliana gene expression dataset
DOI: 10.5061/dryad.p88b8v8/10
title: Fig4B

description: Correlation coefficients of the size of visual error in trial n-1 on the average CS activity during the significant MI interval in the primary error period of trial n.
DOI: 10.5061/dryad.p88b8v8/11
title: Fig4D

description: Complex Spike density functions prior to primary saccade onset in trial n for the three different error conditions (outward, inward, no error) in trial n-1. Separated according to the correlation in Fig4B.
DOI: 10.5061/dryad.p88b8v8/12
title: S1Fig

description: Eye traces
DOI: 10.5061/dryad.p88b8v8/13
title: S2Fig

description: Total and significant datasets for each subject
DOI: 10.5061/dryad.p88b8v8/14
title: S3Fig

description: Negative control of Fig 1D
DOI: 10.5061/dryad.p88b8v8/15
title: S4Fig

description: Negative Control of Fig 1D of trial n-2 to trial n.
DOI: 10.5061/dryad.p88b8v8/16
title: S5Fig

description: Directional MI analysis for the exemplary unit presented in Fig 2
DOI: 10.5061/dryad.p88b8v8/17
title: S6FigA

description: Example for the dependency of Mutual Information on the point of alignment
DOI: 10.5061/dryad.p88b8v8/9
title: Fig3C

description: Timing of maximal Mutual Information for Trial-By-Trial adaptation
DOI: 10.5061/dryad.q12c06f/8
title: Data S6 - Phylogeny
DOI: 10.5061/dryad.q5r472k/3
title: Sampling squares

description: This shapefile represents sampling units for measuring tree cover. Each sampling unit is a 150 x 150 m square. Squares were stratified to properties using a cadastral data set, such that one square represents one property. Within the sampling unit, all tree cover was digitized and categorized into tree cover types. Areas without tree cover were not digitized.
DOI: 10.5061/dryad.rf3664q/1
title: Accession numbers for 16S rhizobia sequences

description: All sequences were collected from GenBank. Accession numbers are listed as well as the plant host each sequence was collected from in addition to the rhizobia genus/species name and country of location.
DOI: 10.5061/dryad.rf3664q/2
title: Rhizobia genera dataset

description: All plant hosts that had information on number of rhizobia genera are listed as well as information on number of introduced ranges, latitude of native range, annual, number of human uses, and area of native range.
DOI: 10.5061/dryad.s3h9r6j/1
title: Supplemental Table 1: Variable Sites in Selected Genera

description: Variable sites in Angiosperms353 genes within the genera Oenothera, Linum, Neurachne, and Portulaca
DOI: 10.5061/dryad.s3h9r6j/2
title: Voucher_table

description: Voucher table for samples used to test Angiosperm353 dataset.
DOI: 10.5061/dryad.s3h9r6j/3
title: onekp_only_angios_degapped

description: Multiple sequence alignments for genes used in Angiosperms353 probe design (FASTA format). Original alignments contained up to 1400 sequences, which have been reduced to remove non-angiosperms. All gap-only sites have been removed.
DOI: 10.5061/dryad.s3h9r6j/4
title: onekp_only_angios_pdistance

description: Pairwise matrices of sequence dissimilarity for angiosperm sequences used to design the Angiosperms353 probe set.
DOI: 10.5061/dryad.s3h9r6j/5
title: Angiosperms353_extracted_seqeuences.tar

description: Sequences extracted from Angiosperms353 via HybPiper for 42 species of angiosperms. Includes: coding sequences ("exon"), non-coding ("intron") sequences and concatenated coding/non-coding ("supercontig") sequences.
DOI: 10.5061/dryad.t85bf04.1/1.1
title: Behavioural dominance data

description: Details of behavioural dominance relationships among focal species pairs.
DOI: 10.5061/dryad.t85bf04.1/3.1
title: Full raw dataset

description: Raw dataset including all responses entered separately.
DOI: 10.5061/dryad.t85bf04.1/4.1
title: Subset of dataset for species pairs with quantitative dominance data

description: Subset of dataset for species pairs with either accessible, quantitative data on dominance relationships, or whose dominance relationships are based on the results of experiments. Dataset corresponds to a supplemental analysis (see R code line 2344).
DOI: 10.5061/dryad.t85bf04.1/5.1
title: R code for analysis

description: R code for all analyses and figures.
DOI: 10.5061/dryad.13v46c6/1
title: Conaway ADRS supplemental data file

description: Original data used in publication
DOI: 10.5061/dryad.1g3gp03/1
title: exp_dataset

description: Experimental data obtained from the artificial invasions of T. chilonis, with the following treatments: L = introduction in lowC landscapes, HH = introduction in highC landscapes in the hub, HF = introduction in highC landscapes outside of the hub.
DOI: 10.5061/dryad.1g3gp03/2
title: Simulation script

description: The R script used to perform the simulations presented in the main text of the article
DOI: 10.5061/dryad.2c448p6/1
title: UADY bird survey data

description: Total abundance counts from bird surveys at UADY tree diversity experiment in Yucatan, Mexico. Birds were surveyed across 32 plots containing either 1 (monoculture = M) or 4 tree species in equal proportion (polyculture = P). The tree composition within plots were from a pool of 6 species; Swietenia macrophylla (A), Ceiba pentandara (B), Cordia dodecandra (C), Piscidia piscipula (D), Tabebuia rosea (E), and Enterolobium cyclocarpum (F). Each plot was surveyed on four separate days between 0600 and 0930 amid peak bird activity, and not on rainy days. Species in table are a subset of all observed species, that include invertebrates in their diet. Taxonomic names are consistent with the Birdlife world list V3 and correspond to nodes in provided phylogeny and entries in trait table.
DOI: 10.5061/dryad.2c448p6/2
title: UADY bird phylogeny

description: Phylogeny depicting evolutionary relationships of insectivorous birds (44 species) observed at UADY tree diversity experiment. Phylogeny is a 95% CI consensus tree derived from 200 trees (accessed at birdtree.org). Branch lengths are calculated as the mean edge length using the "phytools" package in R. This phylogeny is used to calculate PD of foraging birds.
DOI: 10.5061/dryad.2c448p6/3
title: divfx_caterpillar_predation

description: These data are from a field experiment at the UADY tree diversity experiment in which clay caterpillars were applied to trees to assess predation rates. Predators were identified from bite marks on the clay models as either bird, arthropod, or mammal. Clay caterpillars were exposed to predators for 2 consecutive days in an experiment that occurred twice in July 2015. Caterpillars were assessed for bite marks every 24 hours. Each row of this dataset informs the fate of each individual caterpillar after each 24 hour exposure period. Predator attacks are quantified as absence/presence for each 24-hour period. Data are given on the identity of tree species in which they were placed and whether the surrounding experimental plot was a monoculture (M, 1 tree species) or polyculture (P, 4 tree species).
DOI: 10.5061/dryad.3gc7rj6/1
title: Carapace size vs gut width for several species of crab

description: Data on stomach size and crab size for several species of crab
DOI: 10.5061/dryad.3v3m7fk/2
title: TNTmetabolomicsRawData

description: The raw chromatographical data (peak areas) after integration from Orbitrap and triple quad analysis.
DOI: 10.5061/dryad.5jf6j1r/1
title: McNicol-2019-NPCTR-SOC-map

description: This raster [.tif] is the predicted soil organic carbon for the North Pacific coastal temperate rainforest. Content is displayed in megagrams of carbon per hectare (Mg ha-1) to 1 m in mineral soil, plus overlying organic horizons. Map values are the output of a random forest machine learning algorithm trained on pedon data from within British Columbia and southeast Alaska only, therefore confidence is low for predictions south of the US-Canada border and predictions in that region have not been validated. Lakes, glaciers and ice-fields have also not been masked from the map. More information on the map can be found in the associated manuscript.
DOI: 10.5061/dryad.5jf6j1r/2
title: N Pacific coastal temperate rainforest pedon and soil carbon database

description: This database compiles pedon data (ca. 1300 soil profile descriptions) from various sources across coastal British Columbia and southeast Alaska. Each profile includes soil class and horizon designations, and some of the data required for soil carbon stock calculations (e.g. bulk density, carbon concentration, horizon depth and coarse fragment content). Missing data which were gap-filled are highlighted and annotated with comments, and were filled according to procedures outlined in the manuscript and supplement. Data formatting across the different sources were harmonized where possible. References, acknowledgements and field descriptors are provided, including comments on calculation steps. More detail is available in the manuscript supplement.
DOI: 10.5061/dryad.628f242/1
title: POne_Laos_Albo_bionomics_rawdata_IR_adult
DOI: 10.5061/dryad.628f242/2
title: POne_Laos_Albo_bionomics_rawdata_IR_larvae
DOI: 10.5061/dryad.628f242/3
title: POne_Laos_Albo_bionomics_rawdata_Larvalsurvey

description: Raw data of the Ae. albopictus larval survey
DOI: 10.5061/dryad.628f242/4
title: POne_Laos_Albo_bionomics_rawdata_Adultsurvey

description: Raw data of the Ae. albopictus adult survey
DOI: 10.5061/dryad.7012f1b/1
title: Development time for an alpine population of Horned Lark

description: Data was collected in the field from 2003 to 2011 by Alaine Camfield, Elizabeth MacDonald, and Kathy Martin. The variables 'Clutch initiation', 'Incubation initiation', 'Hatch date', and 'Fledge date' are in Julian date format. 'Predation risk' is the probability of nest loss per month calculated using the Mayfield estimate.
DOI: 10.5061/dryad.7012f1b/2
title: Weather data for Hudson Bay Mountain, 2003-2011

description: Temperature and precipitation data collected on Hudson Bay Mountain (alpine field site) over the years 2003, 2004, 3005, 2006, 2007, 2010, and 2011. Data was collected by Alaine Camfield, Kathy Martin and Will MacKenzie. SA stands for 'Smithers Airport' which was the closest weather station with available precipitation data early in the study when precipitation was not available for the study site. See associated paper for more details.
DOI: 10.5061/dryad.77r93d5/1
title: snps.rad1200bp.rb_phased.filtered.final.noLG.nodup

description: Results of SNP calling by GATK, presented in Variance Call Format (VCF)
DOI: 10.5061/dryad.77r93d5/2
title: bayenv_output

description: Results of the BayEnv2 analysis
DOI: 10.5061/dryad.82rv8q9/1
title: Dataset_1_HomeRangeOverlap
DOI: 10.5061/dryad.8q2kg02/1
title: McClain Wood Fall by Species Data
DOI: 10.5061/dryad.8q2kg02/2
title: McClain Wood-Fall Species by Trait Data
DOI: 10.5061/dryad.99p2308/1
title: AUG2011_Doliolid_GUT_DNApool

description: Collection of prey DNA sequences recovered from laboratory raised, captive-fed Dolioletta gegenbauri.  Feeding studies were conducted in August 2011.
DOI: 10.5061/dryad.99p2308/2
title: AUG2011_H2O_DNApool

description: Collection of prey DNA sequences recovered from prey field water to be compared to those prey characterized in D. gegenbauri. Feeding studies were conducted in August 2011.
DOI: 10.5061/dryad.99p2308/3
title: JUN2011_Doliolid_GUT_DNApool

description: Collection of prey DNA sequences recovered from laboratory-raised, captive-fed Dolioletta gegenbauri. Feeding studies were conducted in June 2011.
DOI: 10.5061/dryad.99p2308/4
title: JUN2011_H2O_DNApool

description: Collection of prey DNA sequences recovered from prey field water to be compared to those prey characterized in D. gegenbauri. Feeding studies were conducted in June 2011.
DOI: 10.5061/dryad.99p2308/5
title: JUL2011_Doliolid_GUT_DNApool

description: Collection of prey DNA sequences recovered from laboratory-raised, captive-fed Dolioletta gegenbauri. Feeding studies were conducted in July 2011.
DOI: 10.5061/dryad.99p2308/6
title: JUL2011_H2O_DNApool

description: Collection of prey DNA sequences recovered from prey field water to be compared to those prey characterized in D. gegenbauri. Feeding studies were conducted in July 2011.
DOI: 10.5061/dryad.b5pj61f/1
title: supplement methods and data
DOI: 10.5061/dryad.bh14n51/1
title: Bugula_neritina_DTMR

description: R markdown file PDF for Bugula neritina: temperature dependence of development time and metabolic rate
DOI: 10.5061/dryad.bh14n51/2
title: Bugula_DT

description: Bugula neritina development time with temperature data
DOI: 10.5061/dryad.bh14n51/3
title: Bugula_MR

description: Bugula neritina metabolic rate with temperature data
DOI: 10.5061/dryad.d460505/1
title: Sandom_2018_Rewilding_Risks_and_Opportunities Assessment

description: Rewilding in the English Uplands Workshop (02/05/2017) attendees' perspectives of the ecosystem service and dis-service risks and opportunities presented by different forms of rewilding in the English uplands. 32 attendees included conservation practitioners (NGOs, government, business, independent), professional bodies, academics (conservation, ecology, social science, geography), and students. Attendees were placed into 1 of 5 groups. Risk/Opportunity column gives attendees' perspectives on whether each outcome can be considered a risk or opportunity. Each group could give a range of scores leading to a MinScore and MaxScore.
DOI: 10.5061/dryad.g1nq02r/1
title: Table e-1

description: Search strategy
DOI: 10.5061/dryad.g1nq02r/2
title: Table e-2

description: Characteristics of Supporting and Opposing Studies summarized in Table 1
DOI: 10.5061/dryad.g1nq02r/3
title: eReferences
DOI: 10.5061/dryad.hh42t4j/29
title: w501xII2P3_4
DOI: 10.5061/dryad.hh42t4j/30
title: w501xII2P3_5
DOI: 10.5061/dryad.hh42t4j/31
title: w501xII2P3_6
DOI: 10.5061/dryad.hh42t4j/32
title: w501xII2P3_7
DOI: 10.5061/dryad.hh42t4j/33
title: w501xII2P4_1
DOI: 10.5061/dryad.hh42t4j/34
title: w501xII2P4_2
DOI: 10.5061/dryad.hh42t4j/35
title: w501xII2P4_3
DOI: 10.5061/dryad.hh42t4j/36
title: w501xII2P4_4
DOI: 10.5061/dryad.j447ch4/1
title: Morphometric data for PCA analysis
DOI: 10.5061/dryad.j447ch4/2
title: Supplementary PCA analysis and figures for manuscript
DOI: 10.5061/dryad.j447ch4/3
title: DNA data file (aligned matrix, nexus format)
DOI: 10.5061/dryad.j447ch4/4
title: Phylogenetic tree file output from IQTREE ("best" tree from individual tree search)
DOI: 10.5061/dryad.j447ch4/5
title: Phylogenetic tree file output from IQTREE (trees from bootstrap search)
DOI: 10.5061/dryad.j9c15ff/3
title: Dataset S1. Abundances of molluscs species in the Holocene of the Po Plain

description: Abundances of mollusc species recorded in four cores drilled through the Holocene sedimentary succession of the Po coastal plain (NW Italy).
DOI: 10.5061/dryad.j9c15ff/4
title: R code for analysing stratigraphic occurrences of species
DOI: 10.5061/dryad.m1mj65t/1
title: S1 Table : Burrow characteristics of resting and feeding burrows

description: S1 Table contain data set of the study on den characterization of Indian Pangolin (Manis crassicaudata) in a tropical lowland forested landscape of South-west Sri Lanka.
DOI: 10.5061/dryad.m1vc0/8
title: Sequence_data_min10

description: All ipyrad outfiles for the entire V. nudum complex + outgroups with all loci shared across at least 10 individuals