cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qsh26g
title: Occurrence Download

description: A dataset containing 593 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Passaloecus gracilis (Curtis, 1834)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 593 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088869-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19959988
title: Additional file 9 of Evolution and functional diversification of catalase genes in the green lineage

description: Additional file 9: Table S4. The 3D structure predication for three CATs in Arabidopsis.
DOI: 10.6084/m9.figshare.19959990.v1
title: Additional file 6 of Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets

description: Additional file 6: Figure S9. (a) Alpha diversity comparisons of the gut microbiomes including Ace, Chao, Sobs index, Shannon index, Shannoneven index, Simpson index, Simpsoneven index and Faith's phylogenetic diversity index which were analyzed using a Kruskal-Wallis H test and Tukey-Kramer post hoc test with 95% confidence level. Data are the mean ± s.d (n = 7). ns, no significant differences. (b) Rarefaction curves for Shannon indices at the genus level in the colon contents. Figure S10. (a) Bar charts of relative abundance at the family level in the control and treated groups. (b) Comparison of microbial genera between the high dose group and control. (c) Comparison of microbial families between high dose group and control. Significantly differentially abundant taxa were identified by the Wilcoxon rank-sum test. *p &lt; 0.05; **p &lt; 0.01. Figure S11. (a) Linear discriminant analysis score (log10) with a threshold value of 4 from phylum to genus level. (b) Differences in relative abundance of the variable genera in the colonic microbiota among three group. Each data represented the mean and SEM of relative abundance of each genus (n = 7). One-way analysis of variance and Duncan’s multiple comparison test to determine the statistical. Different letters in the same graph indicate significant statistical differences (p &lt; 0.05).
DOI: 10.6084/m9.figshare.19959972.v1
title: Additional file 1 of Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets

description: Additional file 1: Figure S1. The maximum-likelihood tree of the bacterial taxa. The 16S rRNA gene sequences from the isolates were clustered into 271 taxa with a similarity cut-off of 99% using CD-HIT. The closest related species of each taxon are listed next to the taxon numbers of the sow milk microbiota (SMM). Suspected new species are indicated in blue, and the species in the dairy products are indicated in red dots. Supplementary Data 1. The 16S rRNA gene sequences and classification of all isolates in smBC.
DOI: 10.6084/m9.figshare.19959981.v1
title: Additional file 4 of Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets

description: Additional file 4: Figure S5. The annotation and comparison of P. pentosaceus SMM914 genome. (a) The distribution of predicted CDSs of P. pentosaceus SMM914 in different categories of metabolic function by the online software RAST. (b) A full genome comparison analysis of P. pentosaceus SMM914 with other P. pentosaceus strains, including P. pentosaceus SRCM100194, P. pentosaceus GDIAS001, P. pentosaceus SL001 and P. pentosaceus SRCM102736, visualized by BRIG software. Colors display the percentage of sequence identity based on BLASTN. The two inner rings indicate the GC skew and the GC content. The innermost circle shows the genome coordinates. Supplementary Data 3. P. pentosaceus SMM914 genes and predicted proteins by Pfam protein database. Supplementary Table S1. Oxidative stress resistance genes found in P. pentosaceus SMM914. Supplementary Table S2. The annotation of antibiotic resistance genes in P. pentosaceus SMM914. Supplementary Table S3. The annotation of bacterial virulence factors in P. pentosaceus SMM914.
DOI: 10.6084/m9.figshare.19959972
title: Additional file 1 of Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets

description: Additional file 1: Figure S1. The maximum-likelihood tree of the bacterial taxa. The 16S rRNA gene sequences from the isolates were clustered into 271 taxa with a similarity cut-off of 99% using CD-HIT. The closest related species of each taxon are listed next to the taxon numbers of the sow milk microbiota (SMM). Suspected new species are indicated in blue, and the species in the dairy products are indicated in red dots. Supplementary Data 1. The 16S rRNA gene sequences and classification of all isolates in smBC.
DOI: 10.6084/m9.figshare.19959975
title: Additional file 2 of Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets

description: Additional file 2: Figure S2. Light microscopy images of P. pentosaceus strains with strong antimicrobial activity under a 63x oil immersion objective. Supplementary Data 2. The alignment of 1240 16S rRNA gene sequences against the Silva version 132 16S rRNA gene database, NCBI nucleotide collection (nr/nt) database and DAIRYdb database using BLASTN.
DOI: 10.6084/m9.figshare.19959981
title: Additional file 4 of Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets

description: Additional file 4: Figure S5. The annotation and comparison of P. pentosaceus SMM914 genome. (a) The distribution of predicted CDSs of P. pentosaceus SMM914 in different categories of metabolic function by the online software RAST. (b) A full genome comparison analysis of P. pentosaceus SMM914 with other P. pentosaceus strains, including P. pentosaceus SRCM100194, P. pentosaceus GDIAS001, P. pentosaceus SL001 and P. pentosaceus SRCM102736, visualized by BRIG software. Colors display the percentage of sequence identity based on BLASTN. The two inner rings indicate the GC skew and the GC content. The innermost circle shows the genome coordinates. Supplementary Data 3. P. pentosaceus SMM914 genes and predicted proteins by Pfam protein database. Supplementary Table S1. Oxidative stress resistance genes found in P. pentosaceus SMM914. Supplementary Table S2. The annotation of antibiotic resistance genes in P. pentosaceus SMM914. Supplementary Table S3. The annotation of bacterial virulence factors in P. pentosaceus SMM914.
DOI: 10.6084/m9.figshare.19959985.v1
title: Additional file 8 of Evolution and functional diversification of catalase genes in the green lineage

description: Additional file 8: Table S3. The details imformation of bacteria, protists, fungi and animals
DOI: 10.6084/m9.figshare.19959984
title: Additional file 5 of Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets

description: Additional file 5: Figure S6. Effects of P. pentosaceus SMM914 on (a) growth performance, (b) organ relative weight and intestine length in piglets. Data are the mean ± s.e.m. Statistical analysis was conducted by using one-way ANOVA. Data not sharing the same letter in each point were significantly different (p &lt; 0.05). Figure S7. Effects of P. pentosaceus SMM914 on serum biochemical parameters. Data are the mean ± s.e.m (n = 7). One-way ANOVA with adjustment for multiple comparisons was conducted. a,b Within a variable, values with different superscripts differ (p &lt; 0.05). Figure S8. (a) In HepG2 cell and (b) IPEC-J2 cell, western blotting experiments were to determine the effect of P. pentosaceus SMM914 in MRS broth after 24h fermentation on the protein level of Nrf2. (c) The relative changes in protein intensity were analyzed with unpaired Student’s t-test. Different letters in a graph indicate significant statistical differences (p &lt; 0.05, n = 3).
DOI: 10.6084/m9.figshare.25152299
title: Hu and Zhang, China's National Fitness Plan, data

description: Hu and Zhang, China's National Fitness Plan, data
DOI: 10.6084/m9.figshare.10001729
title: MOESM10 of Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

description: Additional file 10: Table S7. Primer sequences were used in this study.
DOI: 10.6084/m9.figshare.10001756
title: MOESM4 of Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

description: Additional file 4: Table S1. G. hirsutum TALE superfamily genes and its orthologues in Gb, Ga and Gr cotton genomes.
DOI: 10.6084/m9.figshare.10001756.v1
title: MOESM4 of Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

description: Additional file 4: Table S1. G. hirsutum TALE superfamily genes and its orthologues in Gb, Ga and Gr cotton genomes.
DOI: 10.6084/m9.figshare.10001765
title: MOESM6 of Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

description: Additional file 6; Table S3. The QTLs of FS and WT in intraspecific upland cotton populations and interspecific Gh Ă Gb populations.
DOI: 10.6084/m9.figshare.10001765.v1
title: MOESM6 of Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

description: Additional file 6; Table S3. The QTLs of FS and WT in intraspecific upland cotton populations and interspecific Gh Ă Gb populations.
DOI: 10.6084/m9.figshare.10001771
title: MOESM7 of Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

description: Additional file 7: Table S4. The QTLs of VW in intraspecific upland cotton populations and interspecific Gh Ă Gb populations.
DOI: 10.6084/m9.figshare.10001771.v1
title: MOESM7 of Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

description: Additional file 7: Table S4. The QTLs of VW in intraspecific upland cotton populations and interspecific Gh Ă Gb populations.
DOI: 10.6084/m9.figshare.10001774
title: MOESM8 of Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

description: Additional file 8: Table S5. The cis-element analysis of GhTALE gene promoters.
DOI: 10.6084/m9.figshare.10001774.v1
title: MOESM8 of Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

description: Additional file 8: Table S5. The cis-element analysis of GhTALE gene promoters.
DOI: 10.6084/m9.figshare.10001777
title: MOESM9 of Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

description: Additional file 9: Table S6. TFBSs analysis of GhKNAT7 and GhMYB46 in the structural gene promoters of the lignin and cellulose biosynthesis pathway and GhTALE family gene promoters.
DOI: 10.6084/m9.figshare.10001777.v1
title: MOESM9 of Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

description: Additional file 9: Table S6. TFBSs analysis of GhKNAT7 and GhMYB46 in the structural gene promoters of the lignin and cellulose biosynthesis pathway and GhTALE family gene promoters.
DOI: 10.6084/m9.figshare.10001873
title: Another look at the online processing of scalar inferences: an investigation of conflicting findings from visual-world eye-tracking studies

description: Previous psycholinguistic studies that compared the time course of interpretation for <i>pragmatic some</i> and <i>literal all</i> have returned mixed results. In particular, a delayed <i>pragmatic some</i> has been found in some studies but not in others. We explain these conflicting findings in terms of factors which are independent of incremental semantic/pragmatic interpretation. Two offline experiments provide evidence of the effect of these factors. Three visual-world studies showed that they influence participants’ eye movements in online comprehension. We introduce a new measure for investigating the time course of scalar inference. This new measure allows us to reason about the time course question based on the difference in verification procedures between numbers and quantifiers. Results from our visual-world studies suggest that deriving the pragmatic interpretation is not delayed relative to the semantic interpretation.
DOI: 10.6084/m9.figshare.5807631
title: Additional file 11: Table S3. of Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

description: Canonical correspondence analysis (CCA) indicating the effects of geographical and environmental factors on bacterial community composition. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.5807631.v2
title: Additional file 11: Table S3. of Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

description: Canonical correspondence analysis (CCA) indicating the effects of geographical and environmental factors on bacterial community composition. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.5807631.v1
title: Additional file 11: Table S3. of Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

description: Canonical correspondence analysis (CCA) indicating the effects of geographical and environmental factors on bacterial community composition. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.7380500
title: Terlipressin for the treatment of hepatorenal syndrome: an overview of current evidence

description: Hepatorenal syndrome (HRS) is a serious complication of liver cirrhosis, which is of pre-renal origin due to central volume depletion together with cardiac dysfunction and characterized by oliguria with severe urinary sodium retention and elevated serum creatinine levels. HRS is divided into HRS I, which is rapidly progressive and mostly seen in patients with decompensated liver cirrhosis, and HRS II, which progresses more slowly and is always accompanied by gross ascites. Liver transplantation is the best choice of treatment for HRS but rarely available. Current mainstay pharmacological therapies are vasoconstrictors, such as terlipressin, noradrenaline and dopamine, in combination with albumin. This paper aims to overview the current evidence regarding outcomes of terlipressin for the treatment of HRS.
DOI: 10.6084/m9.figshare.7380500.v2
title: Terlipressin for the treatment of hepatorenal syndrome: an overview of current evidence

description: Hepatorenal syndrome (HRS) is a serious complication of liver cirrhosis, which is of pre-renal origin due to central volume depletion together with cardiac dysfunction and characterized by oliguria with severe urinary sodium retention and elevated serum creatinine levels. HRS is divided into HRS I, which is rapidly progressive and mostly seen in patients with decompensated liver cirrhosis, and HRS II, which progresses more slowly and is always accompanied by gross ascites. Liver transplantation is the best choice of treatment for HRS but rarely available. Current mainstay pharmacological therapies are vasoconstrictors, such as terlipressin, noradrenaline and dopamine, in combination with albumin. This paper aims to overview the current evidence regarding outcomes of terlipressin for the treatment of HRS.
DOI: 10.6084/m9.figshare.7380500.v1
title: Terlipressin for the treatment of hepatorenal syndrome: An overview of current evidence

description: Hepatorenal syndrome (HRS) is a serious complication of liver cirrhosis, which is of pre-renal origin due to central volume depletion together with cardiac dysfunction and characterized by oliguria with severe urinary sodium retention and elevated serum creatinine levels. HRS is divided into HRS I, which is rapidly progressive and mostly seen in patients with decompensated liver cirrhosis, and HRS II, which progresses more slowly and is always accompanied by gross ascites. Liver transplantation is the best choice of treatment for HRS but rarely available. Current mainstay pharmacological therapies are vasoconstrictors, such as terlipressin, noradrenaline, and dopamine, in combination with albumin. This paper aims to overview the current evidence regarding outcomes of terlipressin for the treatment of HRS.
DOI: 10.6084/m9.figshare.5807697
title: Additional file 14: Table S4. of Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

description: Percentages of the “above,” “below,” and “neutral” partitions of bacterial communities obtained by fitting Sloan et al.’s [39] neutral model. The fitting proportion of bacterial communities by the Sloan neutral model. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5807697.v2
title: Additional file 14: Table S4. of Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

description: Percentages of the “above,” “below,” and “neutral” partitions of bacterial communities obtained by fitting Sloan et al.’s [39] neutral model. The fitting proportion of bacterial communities by the Sloan neutral model. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5807697.v1
title: Additional file 14: Table S4. of Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

description: Percentages of the “above,” “below,” and “neutral” partitions of bacterial communities obtained by fitting Sloan et al.’s [39] neutral model. The fitting proportion of bacterial communities by the Sloan neutral model. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6331988
title: Licorice root extract and magnesium isoglycyrrhizinate protect against triptolide-induced hepatotoxicity <i>via</i> up-regulation of the Nrf2 pathway

description: Triptolide, the predominant biologically active component of the Chinese herb <i>Tripterygium wilfordii</i> Hook f., possesses numerous pharmacological activities, including anti-inflammatory, anti-fertility, anti-neoplastic, and immunosuppressive effects. However, toxicity and severe adverse effects, particularly hepatotoxicity, limit the clinical application of triptolide. Licorice root extract contains various bioactive compounds and is potent hepatoprotective. Magnesium isoglycyrrhizinate, a magnesium salt of the 18α-glycyrrhizic acid stereoisomer of glycyrrhizic acid, is used clinically in China to treat chronic viral hepatitis and acute drug-induced liver injury. The aim of this study was to investigate the role of the factor erythroid 2-related factor 2 pathway in the protective effects of LE and MIG against triptolide-induced hepatotoxicity. Hepatotoxicity models were established in L-02 cells and rats using triptolide, and the protective effects of LE and MIG were investigated <i>in vitro</i> and <i>in vivo</i>, respectively. LE and MIG significantly protected against triptolide-induced cytotoxicity. Additionally, triptolide decreased the mRNA and protein levels of Nrf2 and down-regulated Nrf2 target genes, including <i>UGT1A</i>, <i>BSEP</i>, and <i>MRP2</i>, while pretreatment with LE and MIG reversed these effects. Finally, Nrf2-involved antioxidant responses were activated in the presence of LE and MIG.
DOI: 10.6084/m9.figshare.6331988.v2
title: Licorice root extract and magnesium isoglycyrrhizinate protect against triptolide-induced hepatotoxicity <i>via</i> up-regulation of the Nrf2 pathway

description: Triptolide, the predominant biologically active component of the Chinese herb <i>Tripterygium wilfordii</i> Hook f., possesses numerous pharmacological activities, including anti-inflammatory, anti-fertility, anti-neoplastic, and immunosuppressive effects. However, toxicity and severe adverse effects, particularly hepatotoxicity, limit the clinical application of triptolide. Licorice root extract contains various bioactive compounds and is potent hepatoprotective. Magnesium isoglycyrrhizinate, a magnesium salt of the 18α-glycyrrhizic acid stereoisomer of glycyrrhizic acid, is used clinically in China to treat chronic viral hepatitis and acute drug-induced liver injury. The aim of this study was to investigate the role of the factor erythroid 2-related factor 2 pathway in the protective effects of LE and MIG against triptolide-induced hepatotoxicity. Hepatotoxicity models were established in L-02 cells and rats using triptolide, and the protective effects of LE and MIG were investigated <i>in vitro</i> and <i>in vivo</i>, respectively. LE and MIG significantly protected against triptolide-induced cytotoxicity. Additionally, triptolide decreased the mRNA and protein levels of Nrf2 and down-regulated Nrf2 target genes, including <i>UGT1A</i>, <i>BSEP</i>, and <i>MRP2</i>, while pretreatment with LE and MIG reversed these effects. Finally, Nrf2-involved antioxidant responses were activated in the presence of LE and MIG.
DOI: 10.6084/m9.figshare.5807718
title: Additional file 15: Table S5. of Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

description: Dissimilarity values within and between groups for water-spring samples. The samples are grouped by seasons and landform types. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5807718.v2
title: Additional file 15: Table S5. of Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

description: Dissimilarity values within and between groups for water-spring samples. The samples are grouped by seasons and landform types. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5807718.v1
title: Additional file 15: Table S5. of Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

description: Dissimilarity values within and between groups for water-spring samples. The samples are grouped by seasons and landform types. (XLSX 9Â kb)