cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/chinasociety-c32-2877
title: Bulletin of the China Society of Southern California, 1939

description: The Society's bulletin for 1939 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2879
title: Bulletin of the China Society of Southern California, 1939

description: The Society's bulletin for 1939 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2884
title: Bulletin of the China Society of Southern California, 1939

description: The Society's bulletin for 1939 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25451/flinders.25009694
title: SUPER-FOCUS databases for diamond version 1

description: <b><i>Diamond version 1 databases for use with </i></b><b><i>SUPER-FOCUS</i></b>Please check your diamond version with <code>diamond --version</code> and then read the diamond documentation to know which version to download. You can also find out the database version you have installed with <code>diamond dbinfo</code>.<br>
DOI: 10.25451/flinders.25009694.v3
title: SUPER-FOCUS databases for diamond version 1

description: <b><i>Diamond version 1 databases for use with </i></b><b><i>SUPER-FOCUS</i></b>Please check your diamond version with <code>diamond --version</code> and then read the diamond documentation to know which version to download. You can also find out the database version you have installed with <code>diamond dbinfo</code>.<br>
DOI: 10.25451/flinders.25009694.v2
title: SUPER-FOCUS databases for diamond version 1

description: <b><i>Diamond version 1 databases for use with </i></b><b><i>SUPER-FOCUS</i></b>Please check your diamond version with <code>diamond --version</code> and then read the diamond documentation to know which version to download. You can also find out the database version you have installed with <code>diamond dbinfo</code>.<br>
DOI: 10.25549/chinasociety-c32-2887
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2891
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2894
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2923
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25451/flinders.24564379
title: Prophages in microbiomes associated with humans

description: A tab-separated values (.tsv) file of the metadata from the bacterial isolates used in this analysis supplemented with a defined ontology, genome characteristics, and the amount of prophage DNA found in the genome.
DOI: 10.25549/chinasociety-c32-2951
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25451/flinders.24564379.v3
title: Prophages in microbiomes associated with humans

description: A tab-separated values (.tsv) file of the metadata from the bacterial isolates used in this analysis supplemented with a defined ontology, genome characteristics, and the amount of prophage DNA found in the genome.
DOI: 10.25451/flinders.24564379.v4
title: Prophages in microbiomes associated with humans

description: A tab-separated values (.tsv) file of the metadata from the bacterial isolates used in this analysis supplemented with a defined ontology, genome characteristics, and the amount of prophage DNA found in the genome.
DOI: 10.25549/chinasociety-c32-2958
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2961
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.15468/dl.qka42m
title: Occurrence Download

description: A dataset containing 7620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pan troglodytes, Gorilla beringei, Gorilla gorilla, Pan paniscus, Pongo pygmaeus, Pongo abelii)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 7620 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018737-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/chinasociety-c32-2972
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2979
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2990
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-3001
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-3007
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-3016
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-3017
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-3023
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25451/flinders.22758359
title: Prophages in microbes associated with humans - deprecated

description: NOTE: This item is deprecated and has been replaced by doi:10.25451/flinders.24564379A tab-separated values (.tsv) file of the metadata from the bacterial isolates used in this analysis supplemented with a defined ontology, genome characteristics, and the amount of prophage DNA found in the genome.
DOI: 10.25451/flinders.22758359.v2
title: Prophages in microbes associated with humans - deprecated

description: NOTE: This item is deprecated and has been replaced by doi:10.25451/flinders.24564379A tab-separated values (.tsv) file of the metadata from the bacterial isolates used in this analysis supplemented with a defined ontology, genome characteristics, and the amount of prophage DNA found in the genome.
DOI: 10.25549/chinasociety-c32-2828
title: Bulletin of the China Society of Southern California, 1936

description: The Society's bulletin for 1936 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25451/flinders.22758359.v1
title: Prophages in microbes associated with humans

description: A tab-separated values (.tsv) file of the metadata from the bacterial isolates used in this analysis supplemented with a defined ontology, genome characteristics, and the amount of prophage DNA found in the genome.
DOI: 10.25549/chinasociety-c32-2834
title: Bulletin of the China Society of Southern California, 1937

description: The Society's bulletin for 1937 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2840
title: Bulletin of the China Society of Southern California, 1937

description: The Society's bulletin for 1937 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2844
title: Bulletin of the China Society of Southern California, 1937

description: The Society's bulletin for 1937 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2845
title: Bulletin of the China Society of Southern California, 1937

description: The Society's bulletin for 1937 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2976
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2980
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25451/flinders.22654570
title: PHROG Matches to PhiSpy Predicted Proteins

description: Tab-separated comparison of the proteins in prophage genomes to the PHROG database version 4 in MMSeqs2 format.
<br>
The columns in the file are:
<br>
  
0. Query ID
1. Subject ID
2. Alignment score
3. Sequence identity
4. E value
5. Query Start
6. Query End
7. Query Length
8. Subject Start
9. Subject End
10. Subject Length
DOI: 10.25451/flinders.22654570.v2
title: PHROG Matches to PhiSpy Predicted Proteins

description: Tab-separated comparison of the proteins in prophage genomes to the PHROG database version 4 in MMSeqs2 format.
<br>
The columns in the file are:
<br>
  
0. Query ID
1. Subject ID
2. Alignment score
3. Sequence identity
4. E value
5. Query Start
6. Query End
7. Query Length
8. Subject Start
9. Subject End
10. Subject Length
DOI: 10.25451/flinders.22654570.v1
title: PHROG Matches to PhiSpy Predicted Proteins

description: Tab-separated comparison of the proteins in prophage genomes to the PHROG database version 4 in MMSeqs2 format.
DOI: 10.25549/chinasociety-c32-2982
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2991
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2993
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-3002
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-3004
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-3013
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-3015
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25451/flinders.22317060
title: Prophage fasta DNA sequences

description: This multi-fasta format DNA sequence file contains all the identified prophage sequences.  
<br>
Each entry includes the accession number of the original sequence, with the prophage number appended. We have also included the definition line from the GenBank file to allow easy searching of specific genomes.
DOI: 10.25451/flinders.22317060.v2
title: Prophage fasta DNA sequences

description: This multi-fasta format DNA sequence file contains all the identified prophage sequences.  
<br>
Each entry includes the accession number of the original sequence, with the prophage number appended. We have also included the definition line from the GenBank file to allow easy searching of specific genomes.
DOI: 10.25549/chinasociety-c32-3021
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25451/flinders.22317060.v1
title: Prophage fasta DNA sequences

description: This multi-fasta format DNA sequence file contains all the identified prophage sequences.  
<br>
Each entry includes the accession number of the original sequence, with the prophage number appended. We have also included the definition line from the GenBank file to allow easy searching of specific genomes.
DOI: 10.25549/chinasociety-c32-3027
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-3039
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-ouc113997m0l
title: Bulletin of the China Society of Southern California, 1950-1959

description: The Society's bulletin first took the official title of "Bulletin" with the April 1950 issue. Prior to that, it was published in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-3222
title: Bulletin of the China Society of Southern California, 1960-1969

description: The China Society of Southern California has held meetings and events in Los Angeles since 1935, focusing on promoting an appreciation of Chinese culture. The collection consists of the Society’s foundation documents (constitution, by-laws), its Bulletin, meeting minutes, correspondence, financial records and various other records of their activities over the course of the last eighty years (1935-2015).The collection came to the University through connections made by Clayton Dube, Associate Director of USC’s U.S.-China Institute. Representatives of the China Society of Southern California, including its President (2014), Robert Lee, visited USC to discuss the donation of the material.See the finding aid (https://archives.usc.edu/repositories/6/resources/2808) for the China Society of Southern California records.
DOI: 10.25451/flinders.22317059
title: PhiSpy Predictions in GenBank Format

description: This file has GenBank format flat files for all the prophage regions we identified. 
<br>
The GenBank files are essentially a slice of all the data from the genome annotation. We added a few PhiSpy-specific outputs, like hits to VOGdb proteins and the E-value of those matches. 
<br>
We searched everything against PHROGs, but have yet to include those hits in the GenBank files. 
<br>
Because there is one file for each prophage prediction (5,005,011 files), we separate them into a directory hierarchy and use the NCBI convention for storing files which uses the first three characters and then separates the numbers into directories, so if you have an accession.
GCA_019958295.1, the GenBank files will be in the subdirectory <em>phispy/GCA/019/958/295/</em>
<br>
<br>
DOI: 10.25451/flinders.22317059.v2
title: PhiSpy Predictions in GenBank Format

description: This file has GenBank format flat files for all the prophage regions we identified. 
<br>
The GenBank files are essentially a slice of all the data from the genome annotation. We added a few PhiSpy-specific outputs, like hits to VOGdb proteins and the E-value of those matches. 
<br>
We searched everything against PHROGs, but have yet to include those hits in the GenBank files. 
<br>
Because there is one file for each prophage prediction (5,005,011 files), we separate them into a directory hierarchy and use the NCBI convention for storing files which uses the first three characters and then separates the numbers into directories, so if you have an accession.
GCA_019958295.1, the GenBank files will be in the subdirectory <em>phispy/GCA/019/958/295/</em>
<br>
<br>
DOI: 10.25549/chinasociety-c32-3258
title: Bulletin of the China Society of Southern California, 1960-1969

description: The China Society of Southern California has held meetings and events in Los Angeles since 1935, focusing on promoting an appreciation of Chinese culture. The collection consists of the Society’s foundation documents (constitution, by-laws), its Bulletin, meeting minutes, correspondence, financial records and various other records of their activities over the course of the last eighty years (1935-2015).The collection came to the University through connections made by Clayton Dube, Associate Director of USC’s U.S.-China Institute. Representatives of the China Society of Southern California, including its President (2014), Robert Lee, visited USC to discuss the donation of the material.See the finding aid (https://archives.usc.edu/repositories/6/resources/2808) for the China Society of Southern California records.
DOI: 10.25451/flinders.22317059.v1
title: PhiSpy Predictions in GenBank Format

description: This file has GenBank format flat files for all the prophage regions we identified. 
<br>
The GenBank files are essentially a slice of all the data from the genome annotation. We added a few PhiSpy-specific outputs, like hits to VOGdb proteins and the E-value of those matches. 
<br>
We searched everything against PHROGs, but have yet to include those hits in the GenBank files. 
<br>
Because there is one file for each prophage prediction (5,005,011 files), we separate them into a directory hierarchy and use the NCBI convention for storing files which uses the first three characters and then separates the numbers into directories, so if you have an accession.
GCA_019958295.1, the GenBank files will be in the subdirectory <em>phispy/GCA/019/958/295/</em>
<br>
<br>
DOI: 10.25549/chinasociety-c32-2903
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2904
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2909
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25549/chinasociety-c32-2912
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.15468/dl.cuywqq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Global Roadkill Data: a dataset on terrestrial vertebrate mortality caused by collision with vehicles (Systematic Records)",
 "ParentEventId is 87",
 "TaxonKey is Mustela putorius"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018738-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/chinasociety-c32-2913
title: Bulletin of the China Society of Southern California, 1940-1949

description: The Society's bulletin for the period 1940-1949 is in the form of invitations to dinner meetings, including information about the programs.
DOI: 10.25451/flinders.22299673
title: Predicted prophage like regions in bacterial genomes

description: This file contains all the predictions about prophages, whether or not they were finally used.
<br>
This file is 447M and contains the following information in a tab separated text file:
0. GENOMEID - Genbank genome assembly accession
1. Contig - Contig ID in the genome assembly
2. Start - prophage start position
3. Stop - prophage end position
4. Length - length of the prophage ((end-start)+1)
5. #CDS - number of coding sequences in the prophage
6. Decision - Whether the prophage is predicted or kept. See below.
<br>
The decision field has three options: Too short (&lt;5 genes), no genes with homology to any known phage gene, or Kept. The latter means that phispy believes that it is a prophage region.
<br>
DOI: 10.25451/flinders.22299673.v2
title: Predicted prophage like regions in bacterial genomes

description: This file contains all the predictions about prophages, whether or not they were finally used.
<br>
This file is 447M and contains the following information in a tab separated text file:
0. GENOMEID - Genbank genome assembly accession
1. Contig - Contig ID in the genome assembly
2. Start - prophage start position
3. Stop - prophage end position
4. Length - length of the prophage ((end-start)+1)
5. #CDS - number of coding sequences in the prophage
6. Decision - Whether the prophage is predicted or kept. See below.
<br>
The decision field has three options: Too short (&lt;5 genes), no genes with homology to any known phage gene, or Kept. The latter means that phispy believes that it is a prophage region.
<br>