cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21946730.v1
title: Supplementary Material for: Short-Term and Long-Term Morbidity after Radical Cystectomy in Patients with NMIBC and Comparison with MIBC: Identifying Risk Factors for Severe Short-Term Complications

description: <b><i>Introduction:</i></b> RC represents a viable treatment option for certain NMIBC patients. However, studies investigating morbidity in the context of RC for NMIBC are scarce. The goal of the current study was to assess and compare morbidity after RC performed in patients with NMIBC and patients with MIBC and to identify risk factors for severe short-term complications. <b><i>Methods:</i></b> Medical records of 521 patients who underwent RC for bladder cancer were retrospectively reviewed. Patients were divided into patients with NMIBC and patients with MIBC. The groups were compared and risk factors for severe complications were identified. <b><i>Results:</i></b> RC for NMIBC was performed in 123 patients (23.6%). Histological upstaging was seen in 47 NMIBC patients (38.2%) and in 231 MIBC patients (58%, <i>p</i> &lt; 0.001). OS was 29.8% and CSS was 15.5%. Both endpoints were higher for RC for MIBC (<i>p</i> &lt; 0.001). More complications affecting the urinary diversion were seen with RC for NMIBC (<i>p</i> = 0.033) and more continent urinary diversions (<i>p</i> = 0.040) were performed in those patients. Obesity (<i>p</i> = 0.008), a higher ASA score (<i>p</i> = 0.004), and preoperative medical drug anticoagulation (<i>p</i> = 0.025) were risk factors for severe short-term morbidity after both, RC for NMIBC and for MIBC. <b><i>Conclusion:</i></b> Patients who underwent RC for NMIBC are exposed to a comparably high perioperative risk than patients with MIBC. RC seems to be a viable treatment option for certain NMIBC patients with a significant histological upstaging in both groups. In patients with obesity, a high ASA score, and with medical drug anticoagulation, the indication for surgery should be confirmed especially strict and possible treatment alternatives should be considered particularly thorough.
DOI: 10.6084/m9.figshare.22472725.v2
title: Analyzed Interview Transcript

description: This data consists of analyzed interview which have been classified into five emotional geographical framework.
DOI: 10.6084/m9.figshare.25764057.v1
title: <i>Moorella</i> <i>speciosa </i>alignment files

description: <b>A</b><b> </b><b>phylogenetic</b><b> </b><b>reappraisal</b><b> </b><b>of</b><b> </b><b><i>Moorella</i></b><b><i> </i></b><b>and</b><b> </b><b><i>Thaxteriellopsis</i></b><b><i> </i></b><b>based</b><b> </b><b>on</b><b> </b><b>fresh material of the type species from India</b>
DOI: 10.6084/m9.figshare.25898737.v1
title: Full data set

description: In this study, we raised crickets on four diets that differed in macronutrient availability: high lipid, high carb, high protein, and a control diet. For the first two weeks of our experiment, we collected weights, number of eggs laid, and survivorship. After two weeks, half of the crickets received an immune challenge while the others received a sham challenge. For the next week, we measured survivorship and egg-laying. Finally, we measured their lytic activity to examine the effect of diet and immune challenges.This is our full dataset, including the raw data as it was collected and any/all transformations that we completed prior to analysis. The attached Excel file has several sheets, which are briefly explained below:Weight: Shows the weight for each individual in the experiment, at the start of our experiment (roughly 1 week post-adult molt), week 1 of our experiment, week 2 of our experiment, and week 3 of our experiment (after the immune challenge). The individual's diet group is noted in the "Individual ID."EggCount: Shows the egg count for each individual in the experiment, at week 1 of our experiment, week 2 of our experiment, and week 3 of our experiment (after the immune challenge). The individual's diet group is noted in the "Individual ID."Survivorship: In columns A-C, shows the total number of days that each individual lived during our experiment (started approximately one week post-adult molt) and the number of days they lived after the immune challenge; in columns E-I, the data is converted to show what proportion of crickets in each diet treatment were alive on each day of the experiment (this converted data was used to produce Figure 5).Lytic Activity: Shows the individual ID (including diet group), immune challenge status, and calculated lytic activity for each individualAssay Wells: Shows the data from the plate reader, including absorbance readings for each cell at each minute of the lytic assay; below (in rows 73-92), it shows the layout of each plateDiet Macronutrient: Shows the compiled nutrition information for each component of the diets (high lipid, high protein, high carbohydrate, and control), as well as the calculations that we used to compile Tables 1 and 2
DOI: 10.17632/5m4w367gt2
title: Net portal appearance used to assess feed evaluation system predictions of the digestive flow and gut metabolism of essential amino acids in dairy cows: A meta-analysis

description: Supplemental material to paper published in Journal of Dairy Science
DOI: 10.17632/nf2f873kvt
title: Supplement for Guselkumab induction therapy demonstrates long-lasting efficacy in patients with mild psoriasis, results from a randomized, placebo-controlled exploratory clinical trial

description: Supplementary data pertaining to “Guselkumab induction therapy demonstrates long-lasting efficacy in patients with mild psoriasis, results from a randomized, placebo-controlled exploratory clinical trial” by J. Rousel, et al. (2023), published in the Journal of the American Academy of Dermatology.
DOI: 10.6084/m9.figshare.14622780.v1
title: South Eastern Asia Benthic Type Reference Sample

description: This benthic reference data is intended for use as a calibration and/or validation data for global scale remote sensing image based classification of coral reef areas. The data is in a vector shapefile format consisting of polygons labelled with one of seven coral reef benthic classes that include Microalgal Mats, Coral/Algae, Rubble, Rock, Seagrass Dense, Seagrass Sparse, Sand. <b>Please cite data as:</b> Kovacs, E., Borrego-Acevedo, R., Canto, R., Harris, D., Kennedy, E., Lyons, M., Markey, K., Murray, N., Ordonez Alvarez, A., Phinn, S., Roe, M., Roelfsema, C., Say, C., Tudman, P., C., Wolff, J., Yuwono, D., Bambric, B., Fox, H., Lieb, Z., Asner , G., Knapp , D., Li, J., Harris, B., Larsen, K. & Rice, K. 2021. South Eastern Asia Benthic Type Reference Sample. University of Queensland. DOI: https://doi.org/10.6084/m9.figshare.14622780 <b>Links to supplementary information:</b> Mapping methods overview (https://allencoralatlas.org/methods/) UQ mapping team web site (https://www.rsrc.org.au/globalreef) Detailed mapping methods description by Lyons et al. (https://doi.org/10.1002/rse2.157) Detailed classification scheme description by Kennedy et al. (https://doi.org/10.1038/s41597-021-00958-z) Detailed reference creation description workflow by Roelfsema et al. (https://doi.org/10.3389/fmars.2021.643381) <b>Funding:</b> Vulcan Inc., (https://vulcan.com) Great Barrier Reef Foundation (https://www.barrierreef.org/) <b>Acknowledgement:</b> This work was initiated and funded primarily through Paul Allen Philanthropies and Vulcan Inc. as part of the Allen Coral Atlas. We acknowledge the late Paul Allen and Ruth Gates for their fundamental vision and drive to enable us to work together on this critical reef mapping problem. Project partners providing financial, service and personnel include: Planet Inc., National Geographic, University of Queensland, Arizona State University, and University of Hawai'i. Significant support has also been provided by Google Inc., Great Barrier Reef Foundation, and Trimble (Ecognition). Contributors to establishing and running the project include: Vulcan Inc. [James Deutsch, Lauren Kickam, Paulina Gerstner, Charlie Whiton, Kirk Larsen, Sarah Frias Torres, Kyle Rice, Eldan Goldenberg, Janet Greenlee]; Planet Inc. [Andrew Zolli, Trevor McDonald, Joe Mascaro, Joe Kington]; University of Queensland [Chris Roelfsema, Stuart Phinn, Emma Kennedy, Mitch Lyons, Nicholas Murray, Doddy Yuwono, Dan Harris, Eva Kovacs, Rodney Borrego, Meredith Roe, Jeremy Wolff, Kathryn Markey, Alexandra Ordonez, Chantal Say, Paul Tudman]; Arizona State University [Greg Asner, Dave Knapp, Jiwei Li, Yaping Xu, Nick Fabina, Heather D'Angelo]; and National Geographic [Helen Fox, Brianna Bambic, Brian Free, Zoe Lieb] and Great Barrier Reef Foundation [Petra Lundgren, Kirsty Bevan, Sarah Castine]. Attributions of contributed field data or maps for the reference sample creation are available at: https://allencoralatlas.org/attribution/
DOI: 10.6084/m9.figshare.25225487.v4
title: Supplementary materials

description: Viral-encoded reverse transcriptase (RT) is a key component in replication (reverse transcribing viruses, generating complementary DNA from an RNA template) and genomic mutations (bacteriophage diversity-generating retroelement). However, the diversity of viral RTs remains poorly understood. Here, we identified 76,208 viral-derived RTs from publicly available genomic and metagenomic datasets to establish 13 viral-derived RT clusters (RTCs), belonging to six phylogenetic RT super clades. These include two viral-derived RT phylogenetic clades that have a close relationship with bacterial Retrons-like and Group II Introns-like RT. Phylogenetic inference of viral terminase-related proteins has revealed the differentiated evolutionary status of RTVs from various RT phylogenetic clades. The genome-content-based network suggests that RTVs tend to form independent clusters compared to other caudoviruses. Most RTVs are colonized in host-associated environments, with <i>Bacteroidota</i>, <i>Bacillota</i>, and <i>Pseudomonadota</i> being the main host lineages. The integrated RTVs were shared between multiple bacterial genera of <i>Bacteroidota</i> and <i>Bacillota</i>. The integrated RTVs from <i>Pseudomonadota</i> are genus-specific. Our results highlight the neglected diversity of RTVs and their potential host spectrums.
DOI: 10.6084/m9.figshare.4233701.v1
title: .xyz files of optimised helicene dimer structures

description: .xyz files obtained from optimisation at the at the DFT-D3(BJ)-TPSS-D3/def2-TZVP level.
DOI: 10.6084/m9.figshare.5398477.v1
title: Supplementary Material for: Euflammation Attenuates Central and Peripheral Inflammation and Cognitive Consequences of an Immune Challenge after Tumor Development

description: <b><i>Objective:</i></b> Repeated subthreshold bacterial exposures in rodents cause novel euflammation that attenuates neuroinflammation and sickness behaviors upon subsequent infectious challenges to the host without eliciting illness behavior. The investigation of bacterial exposure effects on brain and behavior is clinically relevant because bacterial-based antitumor treatments are used successfully, but are suboptimal due to their illness side effects. In addition, behavioral consequences (depression, cognitive impairments) to homeostatic challenges that are associated with inflammation are prevalent and reduce the quality of life in cancer patients and survivors. Therefore, this study tested the potential for euflammation to attenuate behavioral consequences of an immune challenge in tumor-bearing mice. <b><i>Methods:</i></b> Mice with and without oral tumors in their flank underwent the established peripheral euflammatory protocol or vehicle treatment, followed by an acute peripheral immune challenge (lipopolysaccharide [LPS] injection) or PBS. Cognitive function and sickness behavior were assessed after the challenge, and peripheral and central inflammatory responses were measured. <b><i>Results:</i></b> Euflammation reduced LPS-induced peripheral and central inflammation in all mice; however, neuroinflammation was less attenuated in tumor-bearing mice compared with tumor-free controls. LPS-induced lethargy and cognitive impairments were more pronounced among tumor-bearing mice and were effectively attenuated with euflammation. Cognitive changes were independent of brain-derived growth factor gene expression in the hippocampus. <b><i>Conclusion:</i></b> These results suggest that induction of euflammation may be useful in alleviating the negative side effects of bacterial-based tumor treatments and in potentially attenuating common behavioral comorbidities associated with cancer or other chronic diseases.
DOI: 10.17632/4824xzvh96
title: Weibull analysis on the flexural strength of lithium silicate glass-ceramics

description: This database contains processed data of flexural strength obtained on lithium disilicate glass-ceramics bars prepared under different experimental protocols. The data were analyzed with two-parameter Weibull distribution as shown by the equation in which the probability of failure Pf is expressed as a function of flexural strength σ_ : P_f=1-exp[-(σ/σ_∅ )^m ] The Weibull parameter was obtained by performing linear regression on the double logarithm of the resulting two-parameter Weibull distribution following the equation: ln⁡[ln⁡(1/(1-P_f )) ]=m ln⁡σ-m ln⁡〖σ_ϕ 〗 Where σ_∅ is Weibull characteristic strength at P_f = 63.2%; m is Weibull modulus which can be obtained as the slope of the fitting line when plotting ln⁡[ln⁡(1/(1-P_f )) ] vs. ln⁡σ.
DOI: 10.6084/m9.figshare.12622436.v1
title: IL2RA_CRISPR_SURF_GS_filtered_analysis

description: CRISPR-SURF analysis of tiling CRISPR screen data
DOI: 10.6084/m9.figshare.13515203.v2
title: Initial results from systematic gene search using OMIM

description: The 172 primary results produced from a systematic search of Online Mendelian Inheritance of Man (OMIM). Order of article position in search results, OMIM access number, inclusion (I) and exclusion (E) status following the application of evaluation criteria, gene of interest (GOI), and phenotype are recorded. Noted fitness complications refer to genes with roles in multiple biochemical pathways (pleiotropic), therefore multiple independent phenotypes are observed in gene knockout models. Duplicate entries are noted where present. <br>
DOI: 10.6084/m9.figshare.14465730.v1
title: Morphology mirrors trophic niche in a freshwater amphipod community

description: The file contains separate tabs containing gut content data, morphometric measurements and a combined dataset of gut content and dietary relevant morphological trait measurements.
DOI: 10.6084/m9.figshare.6163865.v1
title: Population allele frequency of 1000G five superpopulations without LD-based SNP pruning ( hg19 )

description: Population allele frequency of 1000G five superpopulations without LD-based SNP pruning ( hg19 )
DOI: 10.6084/m9.figshare.6739385.v1
title: Autism Q automate de-ident.csv

description: Autism AQ questionnaire
DOI: 10.17632/59xmzmcsjz
title: deforestation dataset

description: This is a Dataset about deforestation. there is 2010 images from south America rainy forest that we gathered for our research. all images have been extracted from Google Earth.
DOI: 10.17632/bf6nzwwfdb
title: Snow surface time-lapse SfM photogrammetry DEMs data

description: The following DEMs data were derived from time-lapse SfM photogrammetry. The DEMs data were collected next to the August-one ice cap in Qilian Mountains of China. The data were spans from 24 August 2019 to 7 September 2020. The name of each Tif data include month_day_photograph time. For example, Canon_8_24_1.tif means photographed on 24 August at morning of around 8:00. Canon_8_24_2.tif means photographed on 24 August at around 11:00.
DOI: 10.17632/gyxsn7wg6c
title: HCF testing raw data on 3D-printed PLA polymers

description: Data of high-cycle fatigue testing on additive-manufactured fused deposition modeling 3D-printed PLA polymers under various conditions: nozzle diameter, print speed, nozzle temperature, and stress
DOI: 10.17632/jnztrkb4f2
title: Evaluating Large Language Models in Legal Use Cases

description: This contains the full dataset for a rapid literature review into academic research on Large Language Models (LLMs) in legal use cases. In addition to the full data spreadsheet, additional sheets provide overviews of the metrics used to evaluate LLMs in the studies; the different LLMs studied and the families they belong to; the legal domains and use cases in which LLMs are applied in law; and the LLM activities or tasks that the LLMs perform in the studies.
DOI: 10.4121/21154423.v1
title: Data underlying the research of Synergistic degradation of trimethoprim and its phytotoxicity via the UV/chlorine process: Influencing factors on removal and kinetic

description: Occurrence of trimethoprim (TMP), recalcitrant antibiotic, and its adverse effect on ecosystem have been reported in several countries.The study aims to remove the TMP and its phytotoxicity via a UV/chlorine process, compared with chlorination and UV irradiation alone.Various treatment conditions including chlorine doses, pHs, and TMP concentrations was conducted with synthetic waters and effluent waters. The UV/chlorine process exhibited a synergistic effect on the TMP removal, compared with chlorination and UV irradiation alone. The UV/chlorine process was the most effective in removing TMP, followed by chlorination. The UV irradiation slightly affected the TMP removal (less than 5%). The UV/chlorine process completely removed TMP by 15 min contact time, while chlorination for 60 min could achieve 71% of TMP removal. The TMP removal fitted well with the pseudo first-order kinetics, and the rate constant (<em>k’</em>) increased with higher chlorine doses, lower TMP concentrations and low pH. HO• was the major oxidant affecting the TMP removal and its degradation rate, compared with other reactive chlorine species (e.g., Cl•, OCl•). The TMP exposure increased the phytotoxicity by decreasing a germination rate of <em>Lactuca sativa</em> and <em>Vigna radiata</em> seeds. The use of UV/chlorine process could effectively detoxify the TMP, resulting in the phytotoxicity level of treated waters equivalent or lower than those of TMP-free effluent water. The detoxification level depended on the TMP removal, and it was about 0.43 – 0.56 times of TMP removal. The findings indicated the potential use of UV/chlorine process in removing TMP residual and its phytotoxicity.
DOI: 10.6084/m9.figshare.24033690.v3
title: <b>Metadata on Salmonella outbreak in China</b>

description: The transmission of salmonellosis in China necessitates big data analytics of <i>Salmonella</i> outbreaks (SO) to inform policymaking and interventions. This study identifies epidemiological patterns and prevention priorities for SO in China and provides several estimated indicators suitable for predictive modeling and machine learning to quantify epidemic trends, which can help prevent and control the spread of salmonellosis in China.
DOI: 10.6084/m9.figshare.28733081.v2
title: Source Data Figure 1, Figure 2

description: Figure 1: CFU count and nitrite concentration of 2 different strains with and without amoxicillin over time.
DOI: 10.6084/m9.figshare.3476867.v1
title: DLM007.zip

description: This sample is part of the GutCyc Collection (www.gutcyc.org), a compendium of environmental pathway / genome databases. GutCyc was constructed from 418 human microbiome assemblies using the open-source MetaPathways pipeline, that enables reproducible metagenomic annotation.
DOI: 10.17632/29k67t3g4m
title: Data set on Willingness to Pay for renewable energy in Malaysia

description: The dataset presents a study on willingness to pay for the development of renewable energy (RE) on the East Coast of Malaysia, consisting of three states, Terengganu, Pahang, and Kelantan. The data was obtained from a field survey with 740 respondents regarding their knowledge, perceptions, willingness to pay for renewable energy, and sociodemographic variables in the three states. Then the data was used for analysis with the Contingent Valuation method.
DOI: 10.17632/v4yntwdnjk
title: CNN training of satellite images for "Detection and tracking barchan dunes using Artificial Intelligence"

description: This is part of the dataset concerning the YOLO training of satellite images (Barchan dunes). In this dataset, you find the "YOLOv8 train" folder that contains the structure and images obtained from HiRISE, CTX global mosaic, Google Earth Pro, and Copernicus. We saved the images with the HiView, Google Earth Pro, and Copernicus software to train a CNN with images of barchan dunes, the "Train Results" folder that contains the figures and weights of YOLO detection of barchan dunes, the "Earth detections" that contains some barchan dune detections on different locations of Earth, the "Mars detections" that contains some barchan dune detections on different locations of Mars, and the "Code Files" that contains the scripts to detect barchan dunes, train a YOLOv8, convert masks to polygons and plot resulting YOLO parameters.
DOI: 10.6084/m9.figshare.23849127.v1
title: Voice Samples for Patients with Parkinson’s Disease and Healthy Controls

description: The Dempgraphics file contains: Sample ID, participant age, sex and label - HC (Healthy Control) or PwPD (Patient with Parkinson's Disease). The Sample ID is a key that links to the voice recording files PD_AH.zip and HC_AH.zip.Voice recordings are in .wav format and represent a prolonged enunciation of the vowel /a/. These recordings were made using participant's telephones.
DOI: 10.6084/m9.figshare.28639898.v1
title: Supplementary data 2

description: Spreadsheet file including a table providing the number of local populations with genetic data available inside protected areas (PAs) per PA and metadata relative to PAs (type, name, year of establishment, total area), presented in Paz-Vinas, Vandergast et al (accepted).Paz-Vinas I, Vandergast A, Schmidt C, Leigh DM, Blanchet S, Clark RD, Crandall ED, De Kort H, Falgout J, Garroway CJ, Karachaliou E, Kershaw F, O’Brien D, Pinsky ML, Segelbacher G, Toczydlowski R, Hunter ME <b>(accepted)</b>. Sparse genetic data limit biodiversity assessments in protected areas globally. Frontiers in Ecology and the Environment