cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14824650
title: MD simulation of 256-lipid DPPC monolayers in the water-air interface (Martini 2.2@298.15K) (Part 6 of 6)

description: About these systems:

This record contains the simulation files of 256-lipid DPPC monolayers simulated in the water-air interface, at values of the area per lipid of 95 and 100 Å$^2$ (see related works for APL starting from 45 Å$^2$).

The initial strcuture of the systems was assembled using CHARMM-GUI, and equilibrated with GROMACS by following their recommended protocol. The membrane was then compressed and expanded in a simulation using PLUMED, from which states at different values of area per lipid were extracted.

Each of these systems was the initial state of a 1 μs long simulation in the NVT ensemble (T=298.15 K), the ones here provided.

For all simulations, Martini 2.2 parameters were used.

Files provided: 



Compressed file with all ITP files with the parameters used for the simulations.

MDP file used for the production simulations.

For each simulation, TOP with the topology, TPR of the simulation, trajectory in TRR format, EDR file, CPT generated and GRO with the final state of the system. All files corresponding to the same simulation are labeled as DPPC_NVT_XX, where XX is the nominal APL at which the simulations were carried out.
DOI: 10.15468/dl.4b7zst
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Meliosma mexicana V.W.Steinm.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018144-250127130748423/datasets/export for details.
DOI: 10.5281/zenodo.14825530
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Carl Mårten Sondén, http://www.wikidata.org/entity/Q6183770. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6183770
DOI: 10.5281/zenodo.14825531
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Carl Mårten Sondén, http://www.wikidata.org/entity/Q6183770. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6183770
DOI: 10.15468/dl.mbwqnp
title: Occurrence Download

description: A dataset containing 347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Iguana iguana (Linnaeus, 1758)"
 ]
}

 The dataset includes 347 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018145-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28359917
title: <b>Characterization of the </b><b>v</b><b>irulence </b><b>s</b><b>haping and </b><b>ad</b><b>aptability in the </b><b>methicillin-resistant </b><b>Staphylococcus aureus </b><b>ST9 </b><b>l</b><b>ineage</b><b>.</b>

description: Staphylococcus aureus is a major pathogen responsible for hospital- and community-acquired infections, with the accessory gene regulator (agr) system playing a central role in virulence control. The ST9 lineage, commonly associated with livestock, exhibits multidrug resistance but remains understudied in terms of virulence. In this work, we examined nine clinical ST9 MRSA isolates and identified two strains carrying spontaneous frameshift mutations in the agr locus, resulting in the loss of RNAIII and α-toxin expression. These agr-deficient strains exhibited reduced hemolytic activity, enhanced biofilm formation, and attenuated virulence in a Galleria mellonella infection model, underscoring critical roleof agr system in ST9 virulence.Comparative genomic analyses revealed distinct pathogenicity islands in ST9, differing from those in other common clinical lineages. Notably, we identified three novel prophage islands (φST9-A, φST9-B, and φST9-C), with φST9-B carrying the recently characterized tarP virulence gene, suggesting that recombination events within livestock-associated MRSA could contribute to the genetic diversification of ST9. These findings demonstrate the significant virulence potential of the ST9 lineage and the importance of agr-mediated regulation. Moreover, the presence of new prophages highlights the evolutionary adaptability of this lineage. Collectively, our results underscore the clinical threat posed by ST9 MRSA and the necessity for vigilant monitoring to control its spread.
DOI: 10.6084/m9.figshare.28359917.v1
title: <b>Characterization of the </b><b>v</b><b>irulence </b><b>s</b><b>haping and </b><b>ad</b><b>aptability in the </b><b>methicillin-resistant </b><b>Staphylococcus aureus </b><b>ST9 </b><b>l</b><b>ineage</b><b>.</b>

description: Staphylococcus aureus is a major pathogen responsible for hospital- and community-acquired infections, with the accessory gene regulator (agr) system playing a central role in virulence control. The ST9 lineage, commonly associated with livestock, exhibits multidrug resistance but remains understudied in terms of virulence. In this work, we examined nine clinical ST9 MRSA isolates and identified two strains carrying spontaneous frameshift mutations in the agr locus, resulting in the loss of RNAIII and α-toxin expression. These agr-deficient strains exhibited reduced hemolytic activity, enhanced biofilm formation, and attenuated virulence in a Galleria mellonella infection model, underscoring critical roleof agr system in ST9 virulence.Comparative genomic analyses revealed distinct pathogenicity islands in ST9, differing from those in other common clinical lineages. Notably, we identified three novel prophage islands (φST9-A, φST9-B, and φST9-C), with φST9-B carrying the recently characterized tarP virulence gene, suggesting that recombination events within livestock-associated MRSA could contribute to the genetic diversification of ST9. These findings demonstrate the significant virulence potential of the ST9 lineage and the importance of agr-mediated regulation. Moreover, the presence of new prophages highlights the evolutionary adaptability of this lineage. Collectively, our results underscore the clinical threat posed by ST9 MRSA and the necessity for vigilant monitoring to control its spread.
DOI: 10.15468/dl.cnggj6
title: Occurrence Download

description: A dataset containing 1511997377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1511997377 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018092-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14825167
title: Utilization of "Low Price" Feed Substitutes to Support the Future Sustainability of Clarias gariepinus (Burchell, 1822) Production
DOI: 10.5281/zenodo.14825166
title: Utilization of "Low Price" Feed Substitutes to Support the Future Sustainability of Clarias gariepinus (Burchell, 1822) Production
DOI: 10.15468/dl.67a9u5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Meliosma nesites I.M.Johnst.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018146-250127130748423/datasets/export for details.
DOI: 10.6084/m9.figshare.28247972
title: <b>Data from Cahill et al. 2025. Natural Soils-based Oxidation Mitigates Methane Leakage from Integrity Compromised Legacy Wells</b>

description: Data from Cahill et. al. <b>Natural Soils-based Oxidation Mitigates Methane Leakage from Integrity Compromised Legacy Wells</b> published in 2025 in Geophysical Research Letters including soil gas flux data, CALMIM modelling output, soil gas composition and stable carbon isotopes, weather data and microbiome analyses data as described in the article.
DOI: 10.15468/dl.h83874
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Meliosma oaxacana Standl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018147-250127130748423/datasets/export for details.
DOI: 10.48544/8cd7d7c6-cab4-4941-9f4a-3038ef514524
title: Samen onderzoeken, samen veranderen
DOI: 10.5517/ccdc.csd.cc246q36
title: CCDC 1972657: Experimental Crystal Structure Determination

description: Related Article: Feng-Lei Yang|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.8x7yvg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Meliosma seleriana Urb.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018149-250127130748423/datasets/export for details.
DOI: 10.15468/dl.7xfcv2
title: Occurrence Download

description: A dataset containing 2161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-8.40251 55.02604,-4.49201 55.02604,-4.49201 58.83739,-8.40251 58.83739,-8.40251 55.02604))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Balaenoptera acutorostrata Lacépède, 1804",
 "Year 2000-2025"
 ]
}

 The dataset includes 2161 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018150-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d4zawj
title: Occurrence Download

description: A dataset containing 776 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrgus warrenensis (Verity, 1928)"
 ]
}

 The dataset includes 776 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018151-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6j39pd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Meliosma starkii E.Ramos)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018153-250127130748423/datasets/export for details.
DOI: 10.15468/dl.dk8ynu
title: Occurrence Download

description: A dataset containing 1273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ailanthus altissima (Mill.) Swingle)",
 "GadmGid is DEU.7_1"
 ]
}

 The dataset includes 1273 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018152-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y56bqn
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abatia mexicana Standl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018154-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10679521
title: Banana Tree  Disease Detection New&Update Dataset
DOI: 10.15468/dl.wuwkxr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bartholomaea sessiliflora (Standl.) Standl. & Steyerm.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018156-250127130748423/datasets/export for details.
DOI: 10.15468/dl.ppvvre
title: Occurrence Download

description: A dataset containing 8963 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acrostichum aureum L."
 ]
}

 The dataset includes 8963 records from 397 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018155-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m53pmb
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aotus nancymaae Hershkovitz, 1983"
 ]
}

 The dataset includes 77 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018157-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scv9bb
title: Occurrence Download

description: A dataset containing 8644 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Acoustic monitoring in nature travel destinations of Colombia"
 ]
}

 The dataset includes 8644 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018158-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14825557
title: Limits of variability in complexity of valency class systems. Gothic.
DOI: 10.5281/zenodo.14825558
title: Limits of variability in complexity of valency class systems. Gothic.
DOI: 10.15468/dl.8nr4rq
title: Occurrence Download

description: A dataset containing 606477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Magnoliopsida",
 "Country is Madagascar",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 606477 records from 182 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018148-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8tmap6
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aotus nancymai Hershkovitz, 1983"
 ]
}

 The dataset includes 107 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018159-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aw4ttx
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casearia aculeata Jacq.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 49 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018160-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byts2n
title: Occurrence Download

description: A dataset containing 8963 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acrostichum aureum L."
 ]
}

 The dataset includes 8963 records from 397 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018161-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwf3fs
title: Occurrence Download

description: A dataset containing 26723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Australia",
 "Year 2015-2020",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Eurystomus orientalis (Linnaeus, 1766)"
 ]
}

 The dataset includes 26723 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013310-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3a2bfk
title: Occurrence Download

description: A dataset containing 10403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dendrobatidae)",
 "Country is one of (Colombia)",
 "HasCoordinate is one of (true)"
 ]
}

 The dataset includes 10403 records from 179 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0414334-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjxvqn
title: Occurrence Download

description: A dataset containing 635 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Mexico",
 "Country is United States of America",
 "Country is Panama",
 "Country is Nicaragua",
 "Country is Belize",
 "Country is Costa Rica",
 "Country is El Salvador",
 "Country is Guatemala",
 "Country is Honduras"
 ]
 },
 "DatasetKey is Global compendium of Aedes aegypti occurrence",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1990-2020"
 ]
}

 The dataset includes 635 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060230-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7qykdy
title: Occurrence Download

description: A dataset containing 61329 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Ficus carica L.",
 "TaxonKey is Ficus carica"
 ]
}

 The dataset includes 61329 records from 487 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041496-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcm9rp
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Espeletia cochensis Cuatrec."
 ]
}

 The dataset includes 18 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0414339-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.maxk6d
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Polystichum oreodoxa Ching"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050685-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gayxg5
title: Occurrence Download

description: A dataset containing 4264 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-14499.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aythya americana (Eyton, 1838)",
 "Year 1899-2020"
 ]
}

 The dataset includes 4264 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047009-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aq4zdz
title: Occurrence Download

description: A dataset containing 769 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insectos de los Parques Ecológicos Distritales Humedales de Bogotá, D.C."
 ]
}

 The dataset includes 769 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064975-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evkfk6
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haemulon aurolineatum Cuvier, 1830",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is less than or equal to 1980",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 394 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007345-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6wu89
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Lagothrix lagothricha (Humboldt, 1812)"
 ]
}

 The dataset includes 108 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044929-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.