cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.smunxs
title: Occurrence Download

description: A dataset containing 418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Giraffa camelopardalis (Linnaeus, 1758)",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 418 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086047-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zx3u8
title: Occurrence Download

description: A dataset containing 389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coccoloba alnifolia Casar."
 ]
}

 The dataset includes 389 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007313-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mx43yz
title: Occurrence Download

description: A dataset containing 627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rynchops niger Linnaeus, 1758",
 "DatasetKey is Great Backyard Bird Count"
 ]
}

 The dataset includes 627 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086054-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53n7yd
title: Occurrence Download

description: A dataset containing 18764959 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Basidiomycota"
 ]
}

 The dataset includes 18764959 records from 2275 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007299-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wjptp8
title: Occurrence Download

description: A dataset containing 4575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cantharis cryptica Ashe, 1947)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 4575 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234543-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7uhxqd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia sennii Chiov."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206521-230224095556074/datasets/export for details.
DOI: 10.15468/dl.v86wmc
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tiliacora leonensis (Scott Elliot) Diels"
 ]
}

 The dataset includes 135 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015565-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3cgvs
title: Occurrence Download

description: A dataset containing 4828 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Tribulus cistoides L., Tribulus forrestii F.Muell.)"
 ]
}

 The dataset includes 4828 records from 196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288695-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6m97f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tillandsia abbreviata H.Luther"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015594-230810091245214/datasets/export for details.
DOI: 10.15468/dl.z3caut
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apiomorpha pileata (Schrader, 1863)",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0368127-210914110416597/datasets/export for details.
DOI: 10.15468/dl.8x7ppm
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypericum australe Ten.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 772 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003245-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqz7xd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crisicoccus pini (Kuwana, 1902)",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0385663-210914110416597/datasets/export for details.
DOI: 10.15468/dl.cwbrzt
title: Occurrence Download

description: A dataset containing 358 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphiuma pholeter Neill, 1964"
 ]
}

 The dataset includes 358 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0309732-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wejxv7
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Montanoa hexagona B.L.Rob. & Greenm."
 ]
}

 The dataset includes 147 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004058-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11068201
title: Annotation of Metabolites in Stable Isotope Tracing Untargeted Metabolomics via Khipu-web

description: This is the data and analysis scripts needed to recreate the analyses shown in "Annotation of Metabolites in Stable Isotope Tracing Untargeted Metabolomics via Khipu-web"

The abstract of the manuscript summarizes the goal of the paper:

 

Stable isotope tracing is a crucial technique for understanding the metabolic wiring of biological systems, determining metabolic flux through pathways of interest, and detecting novel metabolites and pathways. Despite the potential insights provided by this technique, its application remains limited to a small number of targeted molecules and pathways. Because previous software tools usually require chemical formulas to find relevant features, and the data are highly complex, especially in untargeted metabolomics and when the reactions and metabolites downstream the labeled substrates are poorly characterized. We report here Khipu version 2 and its new user-friendly web application. New functions are added to enhance analyzing stable isotope tracing data including metrics that evaluate peak enrichment in labeled samples, scoring methods to facilitate robust detection of intensity patterns and integrated natural abundance correction. We demonstrate that this approach can be applied to untargeted metabolomics to systematically extract isotope-labeled compounds and annotate the unidentified metabolites.

 

This repository stores the code and data needed to recreate all presented analyses. The code and instructions are in the AnalysisCode.zip. The DDA in the dda_mzML.zip, the MS1 in the dataset_mzml.zip, and the asari results in the AsariResults.zip. The readme is in the AnalysisCode.zip and has more detailed instructions. This directory also has the output data in tabular format for the figures as the figures were mostly made with Excel.
DOI: 10.5281/zenodo.11068202
title: Annotation of Metabolites in Stable Isotope Tracing Untargeted Metabolomics via Khipu-web

description: This is the data and analysis scripts needed to recreate the analyses shown in "Annotation of Metabolites in Stable Isotope Tracing Untargeted Metabolomics via Khipu-web"

The abstract of the manuscript summarizes the goal of the paper:

 

Stable isotope tracing is a crucial technique for understanding the metabolic wiring of biological systems, determining metabolic flux through pathways of interest, and detecting novel metabolites and pathways. Despite the potential insights provided by this technique, its application remains limited to a small number of targeted molecules and pathways. Because previous software tools usually require chemical formulas to find relevant features, and the data are highly complex, especially in untargeted metabolomics and when the reactions and metabolites downstream the labeled substrates are poorly characterized. We report here Khipu version 2 and its new user-friendly web application. New functions are added to enhance analyzing stable isotope tracing data including metrics that evaluate peak enrichment in labeled samples, scoring methods to facilitate robust detection of intensity patterns and integrated natural abundance correction. We demonstrate that this approach can be applied to untargeted metabolomics to systematically extract isotope-labeled compounds and annotate the unidentified metabolites.

 

This repository stores the code and data needed to recreate all presented analyses. The code and instructions are in the AnalysisCode.zip. The DDA in the dda_mzML.zip, the MS1 in the dataset_mzml.zip, and the asari results in the AsariResults.zip. The readme is in the AnalysisCode.zip and has more detailed instructions. This directory also has the output data in tabular format for the figures as the figures were mostly made with Excel.
DOI: 10.15468/dl.2pje6h
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Pteris brasiliensis Raddi"
 ]
}

 The dataset includes 32 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042347-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjpwvs
title: Occurrence Download

description: A dataset containing 818 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbostylis warei (Torr.) C.B.Clarke"
 ]
}

 The dataset includes 818 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108372-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xpm74k
title: Occurrence Download

description: A dataset containing 19009 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Craterellus tubaeformis (Fr.) Quél.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 19009 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234542-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpvaq3
title: Occurrence Download

description: A dataset containing 4167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amphibia)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-92.7026998480032 15.337461962011,-92.4630948619937 15.337461962011,-92.4630948619937 15.5194300098052,-92.7026998480032 15.5194300098052,-92.7026998480032 15.337461962011))"
 ]
}

 The dataset includes 4167 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015611-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usbmcu
title: Occurrence Download

description: A dataset containing 693 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia semiperfoliata Viv."
 ]
}

 The dataset includes 693 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206509-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ycb5b
title: Occurrence Download

description: A dataset containing 1736 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Euphorbia azorica Hochst."
 ]
}

 The dataset includes 1736 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108373-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5y2sq
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "OccurrenceStatus is Present",
 "TaxonKey is Desmophyllum dianthus (Esper, 1794)"
 ]
}

 The dataset includes 259 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0144981-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pupnte
title: Occurrence Download

description: A dataset containing 1803 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cobaea scandens Cav."
 ]
}

 The dataset includes 1803 records from 203 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033493-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wuwz7
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Praxelis missiona (Malme) R.M.King & H.Rob."
 ]
}

 The dataset includes 107 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042334-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5xdm2
title: Occurrence Download

description: A dataset containing 849 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rupiphila tachiroei (Franch. & Sav.) Pimenov & Lavrova"
 ]
}

 The dataset includes 849 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015583-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vdr6w
title: Occurrence Download

description: A dataset containing 528 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sarcohyla bistincta (Cope, 1877)"
 ]
}

 The dataset includes 528 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0302004-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qf6vu
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enchodontidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 166 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015593-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9u2p3
title: Occurrence Download

description: A dataset containing 35366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thunnus alalunga (Bonnaterre, 1788)",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 35366 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206510-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2egsg5
title: Occurrence Download

description: A dataset containing 4167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amphibia)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-92.7026998480032 15.337461962011,-92.4630948619937 15.337461962011,-92.4630948619937 15.5194300098052,-92.7026998480032 15.5194300098052,-92.7026998480032 15.337461962011))"
 ]
}

 The dataset includes 4167 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015605-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yxhqs
title: Occurrence Download

description: A dataset containing 2935 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cantharis figurata Mannerheim, 1843)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 2935 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234553-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jjyua
title: Occurrence Download

description: A dataset containing 307817 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psocodea"
 ]
}

 The dataset includes 307817 records from 511 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015601-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfu1k6
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudorinelepis genibarbis (Valenciennes, 1840)"
 ]
}

 The dataset includes 58 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004171-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-248230
title: Royalty unveiled, 2011

description: [description english/roman)] Glenda Williams Goodson. Royalty unveiled: women trailblazers in Church of God in Christ international missions, 1920-1970. Lancaster, Texas: HCM Publishing, 2011.
DOI: 10.15468/dl.cusxhg
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Réseau Loup - Lynx ONCFS - Réseau Loup-Lynx : Répartition communale Régulière du Loup en 2003"
 ]
}

 The dataset includes 65 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018206-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.