cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5352991.v1
title: Over-dispersed age-period-cohort models

description: We consider inference and forecasting for aggregate data organised in a two-way table with age and cohort as indices, but without measures of exposure. This is modelled using a Poisson likelihood with an age-period-cohort structure for the mean while allowing for over-dispersion. We propose a repetitive structure that keeps the dimension of table fixed while increasing the latent exposure. For this we use a class of infinitely divisible distributions which include a variety of compound Poisson models and Poisson mixture models. This results in asymptotic F inference and t forecast distributions.
DOI: 10.6084/m9.figshare.5352895
title: <i>Enterococcus Faecalis</i> Infective Endocarditis Following Percutaneous Edge-to-Edge Mitral Valve Repair

description: <i>Enterococcus Faecalis</i> Infective Endocarditis Following Percutaneous Edge-to-Edge Mitral Valve Repair
DOI: 10.6084/m9.figshare.5352895.v2
title: <i>Enterococcus Faecalis</i> Infective Endocarditis Following Percutaneous Edge-to-Edge Mitral Valve Repair

description: <i>Enterococcus Faecalis</i> Infective Endocarditis Following Percutaneous Edge-to-Edge Mitral Valve Repair
DOI: 10.6084/m9.figshare.5352895.v1
title: Enterococcus faecalis infective endocarditis following percutaneous edge-to-edge mitral valve repair

description: Infectious Endocarditis, Catheter-Based Coronary and Valvular Interventions, Echocardiography
DOI: 10.6084/m9.figshare.5352823
title: A Dirichlet Process Gaussian State Machine Model for Change Detection in Transient Processes

description: The ability to detect incipient and critical changes in real world process—esessential for system integrity assurance—is currently impeded by the mismatch between the key assumption of stationarity underlying most change detection methods and the nonlinear and nonstationary (transient) dynamics of most real-world processes. The current approaches are slow or outright unable to detect qualitative changes in the behaviors that lead to anomalies. We present a Dirichlet process Gaussian state machine (DPGSM) model to represent dynamic intermittency, which is one of the most ubiquitous real-world transient behaviors. The DPGSM model treats a signal as a random walk among a Dirichlet process mixture of Gaussian clusters. Hypothesis tests and a numerical scheme based on this nonparametric representation were developed to detect subtle changes in the transient (intermittent) dynamics. Experimental investigations suggest that the DPGSM approach can consistently detect incipient, critical changes in intermittent signals some 50–2000 ms (20–90%) ahead of competing methods in benchmark test cases as well as a variety of real-world applications, such as in alternation patterns (e.g., ragas) in a music piece, and in the vibration signals capturing the initiation of product defects in an ultraprecision manufacturing process. A supplementary file to this article, available online, includes a Matlab implementation of the presented DPGSM.
DOI: 10.6084/m9.figshare.5352823.v2
title: A Dirichlet Process Gaussian State Machine Model for Change Detection in Transient Processes

description: The ability to detect incipient and critical changes in real world process—esessential for system integrity assurance—is currently impeded by the mismatch between the key assumption of stationarity underlying most change detection methods and the nonlinear and nonstationary (transient) dynamics of most real-world processes. The current approaches are slow or outright unable to detect qualitative changes in the behaviors that lead to anomalies. We present a Dirichlet process Gaussian state machine (DPGSM) model to represent dynamic intermittency, which is one of the most ubiquitous real-world transient behaviors. The DPGSM model treats a signal as a random walk among a Dirichlet process mixture of Gaussian clusters. Hypothesis tests and a numerical scheme based on this nonparametric representation were developed to detect subtle changes in the transient (intermittent) dynamics. Experimental investigations suggest that the DPGSM approach can consistently detect incipient, critical changes in intermittent signals some 50–2000 ms (20–90%) ahead of competing methods in benchmark test cases as well as a variety of real-world applications, such as in alternation patterns (e.g., ragas) in a music piece, and in the vibration signals capturing the initiation of product defects in an ultraprecision manufacturing process. A supplementary file to this article, available online, includes a Matlab implementation of the presented DPGSM.
DOI: 10.6084/m9.figshare.5350954
title: Annotation of Human Grasp Data

description: Comma-separated file with grasp annotation from archived Depth, GoPro and Xsens zip files submitted
DOI: 10.6084/m9.figshare.5352823.v1
title: A Dirichlet process Gaussian state machine model for change detection in transient processes

description: The ability to detect incipient and critical changes in real world processes—essential for system integrity assurance—is currently impeded by the mismatch between the key assumption of stationarity underlying most change detection methods and the nonlinear and nonstationary (transient) dynamics of most real-world processes. The current approaches are slow or outright unable to detect qualitative changes in the behaviors that lead to anomalies. We present a Dirichlet process Gaussian state machine (DPGSM) model to represent dynamic intermittency, which is one of the most ubiquitous real-world transient behaviors. The DPGSM model treats a signal as a random walk among a Dirichlet process mixture of Gaussian clusters. Hypothesis tests and a numerical scheme based on this nonparametric representation were used to detect subtle changes in the transient (intermittent) dynamics. Experimental investigations suggest that the DPGSM approach can consistently detect incipient, critical changes in intermittent signals some 50–2000 ms (20–90%) ahead of competing methods in benchmark test cases as well as a variety of real-world applications, such as in alternation patterns (e.g., ragas) in a music piece and vibration signals capturing the initiation of product defects in an ultra-precision manufacturing process. A supplementary file to this paper, available online, includes a Matlab implementation realizing the presented DPGSM.
DOI: 10.6084/m9.figshare.5350954.v1
title: Annotation of Human Grasp Data

description: Comma-separated file with grasp annotation from archived Depth, GoPro and Xsens zip files submitted
DOI: 10.6084/m9.figshare.5350765
title: Political Alienation, Rurality and the Symbolic Role of Swedish Wolf Policy

description: Attitudes towards wolf policy are likely to be driven by perceived differences in political power between urban and rural groups. Using Swedish survey data collected in 2014 and structural equation modeling, I evaluated the effects of political alienation. Political alienation mediated the effect of having an urban or rural place of residence on attitudes towards wolf policy. Politically alienated individuals also preferred more extreme policy options than other respondents, while being less likely to approve of the current wolf policy in Sweden. These findings suggest that political alienation drives attitude polarization in wolf related social conflicts. Awareness of these underlying power asymmetries could possibly increase both policy legitimacy and management efficiency. This highlights the importance of accounting for social context in relation to policy-making and conservation efforts related to wolves.
DOI: 10.6084/m9.figshare.5350765.v1
title: Political Alienation, Rurality and the Symbolic Role of Swedish Wolf Policy

description: Attitudes towards wolf policy are likely to be driven by perceived differences in political power between urban and rural groups. Using Swedish survey data collected in 2014 and structural equation modeling, I evaluated the effects of political alienation. Political alienation mediated the effect of having an urban or rural place of residence on attitudes towards wolf policy. Politically alienated individuals also preferred more extreme policy options than other respondents, while being less likely to approve of the current wolf policy in Sweden. These findings suggest that political alienation drives attitude polarization in wolf related social conflicts. Awareness of these underlying power asymmetries could possibly increase both policy legitimacy and management efficiency. This highlights the importance of accounting for social context in relation to policy-making and conservation efforts related to wolves.
DOI: 10.6084/m9.figshare.5350729
title: UK-NZ mummies

description: Dataset from DNA metabarcoding analysis on aphid mummies using universal COI primers to amplify the DNA of aphids, parasitoids and hyperparasitoids. The Excel file displays the number of reads for each MOTU (rows) and in each sample (columns). The first page corresponds to mummies collected from New Zwealand, the second Excel page corresponds to mummies collected in the UK. This dataset supports a publication currently under revision for the journal Metabarcoding and Metagenomics (MBMG).
DOI: 10.6084/m9.figshare.5350714
title: Raw data set for the study “What women prefer and what they think they prefer in short- and long-term partners. The effects of the phase of the menstrual cycle, hormonal contraception, pregnancy, and the marital and the parenthood status on partner preferences”

description: csv file with raw data. Some of them have not been analysed yet. If you want to do a new study on this data set, please contact Jaroslav Flegr flegr@cesnet.cz
DOI: 10.6084/m9.figshare.5350726
title: Dataset for: Characterization of a Polypeptide Binding Site in the DEAD Motor of the SecA ATPase

description: Peptides from a CNBr digest of signal-sequenceless maltose binding protein (MBP) were coupled to a surface plasmon resonance (SPR) chip. SecA-N95, SecA-N68, and SecA-DM (which consists of only the DEAD Motor domains, NBD1 and NBD2) bound to the immobilized peptides; ADP weakened the binding. SecA-DM, which lacks the “preprotein cross-linking domain” (PPXD), displayed the most extensive binding, while an MBP-PPXD chimera showed no binding, demonstrating that the PPXD does not contribute to the binding. The sequence specificity was characterized using oriented peptide libraries; these results enabled synthesis of a 20-residue peptide that was used to recapitulate the results obtained with MBP-derived peptides. The study shows there is a promiscuous and nucleotide-modulated peptide-binding site in the DEAD Motor domains of SecA.
DOI: 10.6084/m9.figshare.5350696
title: Supplementary videos to: String-pulling in Martin’s spot-nosed monkey (Cercopithecus nictitans martini): Evidence of physical continuity understanding

description: The videos show a subject in the study performing the various experiments.<br>
DOI: 10.6084/m9.figshare.5350726.v1
title: Dataset for: Characterization of a Polypeptide Binding Site in the DEAD Motor of the SecA ATPase

description: Peptides from a CNBr digest of signal-sequenceless maltose binding protein (MBP) were coupled to a surface plasmon resonance (SPR) chip. SecA-N95, SecA-N68, and SecA-DM (which consists of only the DEAD Motor domains, NBD1 and NBD2) bound to the immobilized peptides; ADP weakened the binding. SecA-DM, which lacks the “preprotein cross-linking domain” (PPXD), displayed the most extensive binding, while an MBP-PPXD chimera showed no binding, demonstrating that the PPXD does not contribute to the binding. The sequence specificity was characterized using oriented peptide libraries; these results enabled synthesis of a 20-residue peptide that was used to recapitulate the results obtained with MBP-derived peptides. The study shows there is a promiscuous and nucleotide-modulated peptide-binding site in the DEAD Motor domains of SecA.
DOI: 10.6084/m9.figshare.5350729.v1
title: UK-NZ mummies

description: Dataset from DNA metabarcoding analysis on aphid mummies using universal COI primers to amplify the DNA of aphids, parasitoids and hyperparasitoids. The Excel file displays the number of reads for each MOTU (rows) and in each sample (columns). The first page corresponds to mummies collected from New Zwealand, the second Excel page corresponds to mummies collected in the UK. This dataset supports a publication currently under revision for the journal Metabarcoding and Metagenomics (MBMG).
DOI: 10.6084/m9.figshare.5350696.v2
title: Supplementary videos to: String-pulling in Martin’s spot-nosed monkey (Cercopithecus nictitans martini): Evidence of physical continuity understanding

description: The videos show a subject in the study performing the various experiments.<br>
DOI: 10.6084/m9.figshare.5350678
title: COMP 330: Software Engineering at Loyola University Chicago

description: In this course, students learn real-world theory and techniques organizations use to create high-quality software on time. Students work on a large programming team to create plans, review progress, measure quality, and make written and oral analyses of their project.
DOI: 10.6084/m9.figshare.5350696.v1
title: Untitled Item

description: The videos show a subject in the study performing the various experiments.<br>
DOI: 10.6084/m9.figshare.5350786.v1
title: [A Procedure for Multilevel Logistic Modeling] Appendix, Datasets, and Syntax Files

description: - For each software, a series of sub-appendices describes the way to handle each stage of the procedure;<br>- For each software, a .zip file contains the dataset in .dta (for Stata), .rdata (for R), .dat (for Mplus), and .sav (for SPSS), as well as the syntax file(s) in .do format (for Stata), .R (for R), .inp (for Mplus), and .sps (for SPSS)- The dataset is also provided in .csv format.<br><br>Sommet, N. and Morselli, D. (2017). Keep Calm and Learn Multilevel Logistic Modeling: A Simplified Three-Step Procedure Using Stata, R, Mplus, and SPSS.<i> International Review of Social Psychology</i>, X(X), 1–15, DOI: https://doi.org/10.5334/irsp.90
DOI: 10.6084/m9.figshare.5350786.v2
title: [A Procedure for Multilevel Logistic Modeling] Appendix, Datasets, and Syntax Files

description: - For each software, a series of sub-appendices describes the way to handle each stage of the procedure;<br>- For each software, a .zip file contains the dataset in .dta (for Stata), .rdata (for R), .dat (for Mplus), and .sav (for SPSS), as well as the syntax file(s) in .do (for Stata), .R (for R), .inp (for Mplus), and .sps (for SPSS)- The dataset is also provided in .csv format.<br><br>If you notice a mistake in the Stata or SPSS-related Appendices and/or syntax files, please report it to Nicolas Sommet (nicolas.sommet@unil.ch). If you notice a mistake in the R or Mplus-related Appendices and/or syntax files, please report it to Davide Morselli (davide.morselli@unil.ch).<br><br>Sommet, N. and Morselli, D. (2017). Keep Calm and Learn Multilevel Logistic Modeling: A Simplified Three-Step Procedure Using Stata, R, Mplus, and SPSS. <i>International Review of Social Psychology</i>, <i>30</i>, 203–218, DOI: https://doi.org/10.5334/irsp.90<br>
DOI: 10.6084/m9.figshare.5350786.v3
title: [A Procedure for Multilevel Logistic Modeling] Appendix, Datasets, and Syntax Files

description: - For each software, a series of sub-appendices describes the way to handle each stage of the procedure;<br>- For each software, a .zip file contains the dataset in .dta (for Stata), .rdata (for R), .dat (for Mplus), and .sav (for SPSS), as well as the syntax file(s) in .do (for Stata), .R (for R), .inp (for Mplus), and .sps (for SPSS)- The dataset is also provided in .csv format.<br><br>If you notice a mistake in the Stata or SPSS-related Appendices and/or syntax files, please report it to Nicolas Sommet (nicolas.sommet@unil.ch). If you notice a mistake in the R or Mplus-related Appendices and/or syntax files, please report it to Davide Morselli (davide.morselli@unil.ch).<br><br>Sommet, N. and Morselli, D. (2017). Keep Calm and Learn Multilevel Logistic Modeling: A Simplified Three-Step Procedure Using Stata, R, Mplus, and SPSS. <i>International Review of Social Psychology</i>, <i>30</i>, 203–218, DOI: https://doi.org/10.5334/irsp.90<br>
DOI: 10.6084/m9.figshare.5350786.v4
title: [A Procedure for Multilevel Logistic Modeling] Appendix, Datasets, and Syntax Files

description: - For each software, a series of sub-appendices describes the way to handle each stage of the procedure;<br>- For each software, a .zip file contains the dataset in .dta (for Stata), .rdata (for R), .dat (for Mplus), and .sav (for SPSS), as well as the syntax file(s) in .do (for Stata), .R (for R), .inp (for Mplus), and .sps (for SPSS)- The dataset is also provided in .csv format.<br><br>If you notice a mistake in the Stata or SPSS-related Appendices and/or syntax files, please report it to Nicolas Sommet (nicolas.sommet@unil.ch). If you notice a mistake in the R or Mplus-related Appendices and/or syntax files, please report it to Davide Morselli (davide.morselli@unil.ch).<br><br>Sommet, N. and Morselli, D. (2017). Keep Calm and Learn Multilevel Logistic Modeling: A Simplified Three-Step Procedure Using Stata, R, Mplus, and SPSS. <i>International Review of Social Psychology</i>, <i>30</i>, 203–218, DOI: https://doi.org/10.5334/irsp.90<br>
DOI: 10.6084/m9.figshare.5350447
title: convective_variability_figures_and_meta

description: Zipped directory containing all raw figures and metadata on how to create the figures.<br>
DOI: 10.6084/m9.figshare.5350435
title: Methane premixed-air flame data used in "Accelerating finite-rate chemical kinetics with coprocessors: comparing vectorization methods on GPUs, MICs, and CPUs"

description: Profile data from a one-dimensional calculation for a premixed methane-air flame, made using Cantera's FreeFlame and the GRI-Mech 3.0 model. The unburned temperature at the left boundary is 300 K and the equivalence ratio of the fresh reactants is 0.67.<br>First row holds number of data points and number of species in the model, and remaining rows contain data points with the following columns: x location (m), temperature (K), pressure (Pa), and then species mass fractions.
DOI: 10.6084/m9.figshare.5350450
title: Numerical versus narrative: A comparison between methods to measure medical student performance during clinical clerkships

description: <b>Background:</b> Medical school evaluations typically rely on both language-based narrative descriptions and psychometrically converted numeric scores to convey performance to the grading committee. We evaluated inter-rater reliability and correlation of numeric versus narrative evaluations for students on their Neurology Clerkship. <b>Design/Methods:</b> 50 Neurology Clerkship in-training evaluation reports completed by their residents and faculty members at the University of Rochester School of Medicine were dissected into narrative and numeric components. 5 Clerkship grading committee members retrospectively gave new narrative scores (NNS) while blinded to original numeric scores (ONS). We calculated intra-class correlation coefficients (ICC) and their associated confidence intervals for the ONS and the NNS. In addition, we calculated the correlation between ONS and NNS. <b>Results:</b> The ICC was greater for the NNS (ICC = .88 (95% CI = .70–.94)) than the ONS (ICC = .62 (95% CI = .40–.77)) Pearson correlation coefficient showed that the ONS and NNS were highly correlated (<i>r</i> = .81). <b>Conclusions:</b> Narrative evaluations converted by a small group of experienced graders are at least as reliable as numeric scoring by individual evaluators. We could allow evaluators to focus their efforts on creating richer narrative of greater value to trainees.
DOI: 10.6084/m9.figshare.5350435.v1
title: Methane premixed-air flame data used in "Accelerating finite-rate chemical kinetics with coprocessors: comparing vectorization methods on GPUs, MICs, and CPUs"

description: Profile data from a one-dimensional calculation for a premixed methane-air flame, made using Cantera's FreeFlame and the GRI-Mech 3.0 model. The unburned temperature at the left boundary is 300 K and the equivalence ratio of the fresh reactants is 0.67.<br>First row holds number of data points and number of species in the model, and remaining rows contain data points with the following columns: x location (m), temperature (K), pressure (Pa), and then species mass fractions.
DOI: 10.6084/m9.figshare.5350432
title: Geochemistry and zircon Hf isotopes of the Early Mesozoic intrusive rocks in the south Hunchun, Yanbian area, Northeast China: petrogenesis and implications for crustal growth

description: This paper presents major element, trace element, and new zircon Hf isotopic data for the Early Mesozoic intrusive rocks in the south Hunchun, Yanbian area, Northeast China. These data are used to constrain the petrogenesis of these intrusive rocks and their implications for the Phanerozoic continental growth of the Central Asian Orogenic Belt (CAOB). Combining geology, geochronology, and whole-rock geochemistry, we identify three distinct episodes of magmatism as Early–Middle Triassic (249–237 Ma), Late Triassic (224–206 Ma), and Early Jurassic (200–187 Ma). The Early–Middle Triassic (249–237 Ma) adakitic tonalite and granodiorite were produced by the partial melting of subducted oceanic slabs, and the melts were contaminated by mantle peridotite during their ascent, whereas the coeval non-adakitic diorite and monzogranite were most likely derived from partial melting of crustal material. The remarkably high zircon Hf isotopic signature (ε<sub>Hf</sub>(t) = + 9.4 – +18.9), the enrichment in large-ion lithophile element and light rare earth elements, and the depletion in high field strength element suggest that these 224 Ma gabbros were derived from the partial melting of depleted mantle modified by subduction-related fluids. The 212 Ma monzogranite was most likely derived from juvenile material mixed with old crustal material as evidenced by their high SiO<sub>2</sub>, low MgO, and low Cr concentrations and variable ε<sub>Hf</sub>(t) values (–4.6 to +10.0). Except for the 197 Ma tonalites with affinity to the high silica adakites, the overall geochemical evolution of Early Jurassic (200–187 Ma) rocks was consistent with fractional crystallization from quartz diorite, granodiorite, and monzogranite to syenogranite. Both the Early Jurassic syn-subduction lateral continental growth by accretion of arc complexes and the Late Triassic post-collisional vertical continental growth by accretion of mantle-derived material played an important role in the Phanerozoic continental growth of the CAOB.
DOI: 10.6084/m9.figshare.5350447.v2
title: convective_variability_figures_and_meta

description: Zipped directory containing all raw figures and metadata on how to create the figures.<br>