cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4717529
title: Macapype validation, ucdavis_subject

description: T1 image and brain_mask segmentation manuelle for Prime-DE, ucdavis_subject &lt;sub-032140_ses-001_run-1&gt;
DOI: 10.5281/zenodo.4453192
title: How dopants limit the ultrahigh thermal conductivity of boron arsenide: a first principles study

description: The dataset contains the necessary information to reproduce the phonon-defect scattering rates and the phonon thermal conductivity of cubic boron arsenide (BAs) upon doping, via the almaBTE software. Input files contain: 1) Interatomic force constants for the pristine BAs, required to extract the phonon band structure and the intrinsic scattering processes; 2) Unit cell POSCAR; 3) Interatomic force constants for the C, Ge and Si impurities, required to compute the phonon-defect scattering rates beyond the mass-only approximation. Output files contain: 1) Phonon-defect scattering rates (mass-only approximation, bond-only approximation, total) for charged and neutral impurities; 2) Thermal conductivity at 300 K as function of the impurity concentration.
DOI: 10.5281/zenodo.4453191
title: How dopants limit the ultrahigh thermal conductivity of boron arsenide: a first principles study

description: The dataset contains the necessary information to reproduce the phonon-defect scattering rates and the phonon thermal conductivity of cubic boron arsenide (BAs) upon doping, via the almaBTE software. Input files contain: 1) Interatomic force constants for the pristine BAs, required to extract the phonon band structure and the intrinsic scattering processes; 2) Unit cell POSCAR; 3) Interatomic force constants for the C, Ge and Si impurities, required to compute the phonon-defect scattering rates beyond the mass-only approximation. Output files contain: 1) Phonon-defect scattering rates (mass-only approximation, bond-only approximation, total) for charged and neutral impurities; 2) Thermal conductivity at 300 K as function of the impurity concentration.
DOI: 10.6084/m9.figshare.14459535.v1
title: Data and scripts in Huang et al, "Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota and a tendency toward an independent lifestyle"

description: This compressed file includes six folders: 1_single_protein_trees_of_orthologs: Alignments and treefiles used in the "Selection of orthologs for phylogenetic analysis of Woesearchaeota". 2_phylogenetic_trees_Woese&Pace: Alignments and treefiles of 152 MAGs for phylogenetic analysis based on 15 ribosomal proteins and the top-50% ranked orthologs 3_16S_rRNA_gene: Alignments and treefiles used in the 16S rRNA gene phylogenetic analysis 4_individual_protein_trees: Alignment and treefiles used in the phylogenetic analysis in fig.4, suppl. fig7-8, suppl. fig10-23 and suppl. fig25-42 5_protein_families_52_MAGs: The file includes alignment and treefile of phylogenetic analysis of 52 MAGs, ALE reconciliation results and protein families files 6_scripts Python scripts used in phylogenetic analysis
DOI: 10.6084/m9.figshare.14479503
title: CrossPerformancePowerPrediction

description: We have collected performance and power datasets for 6 benchmark applications; mser, tracking, svm and stitch from SD-VBS benchmark and sha and dijkstra from MiBench benchmark from simulation systems built-in Gem5 simulator with emulation mode as well as from physical systems.<br>Simulation Systems Performance and Power Dataset:We have built 475 simulation systems in the Gem5 simulator using emulation mode by collecting nine hardware features cpu clock speed, instriction-set-architecture (ISA), cores, L1 cache size, L2 cache size, L3 cache size, memory type, memory access speed and memory size from real systems available in the market today. We have executed each of the 6 benchmark applications on each of the 475 simulation systems to collect actual runtime along with hardware features. We have utilized the McPAT to collect power consumption for each application execution on Gem5 simulation systems. The hardware features, performance (Runtime) and Power is available in files /benchmark_algo/%application%/%application%_power.csv e.g. for mser it is available at benchmark_algo/mser/mser_power.csv, etc.<br>Physical Systems Performance and Power Dataset:We have selected 4 physical systems for our cross performance power prediction experiments. We first have collected hardware feature values from each of the four systems using the dmidecode utility. We have modified each of the 6 benchmark applications' source code to integrate PAPI-API to collect power consumption. PAPI-API uses Intel's RAPL to read machine status registers (MSRs) to collect power consumption. We have executed modified versions of each benchmark application on each physical system to collect runtime and power consumption from benchmark logs. The hardware features, performance (Runtime) and Power are available in files /benchmark_algo/%application%/%application%_power_lab.csv e.g. for mser it is available at benchmark_algo/mser/mser_power_lab.csv, etc.<br>Performance and Power Dataset from Gem5 Systems with Hardware Features of Physical Systems:For validation purposes, we have to build Gem5 systems with identical hardware feature values as the physical systems. We have collected performance power for each benchmark application by executing each of these systems. The files /benchmark_algo/%application%/Gem5LabSystemConfigs.csv under each application folder consists of performance (runtime) and power for the Gem5 systems with features of physical systems.
DOI: 10.5281/zenodo.4717607
title: Metals (Hg, As, Se), lipid and nitrogen levels within fish muscular system in two fish species (Striped Bass and Northern Pike)

description: Metals (Hg, As, Se), lipid and nitrogen levels within fish muscular system in two fish species (Striped Bass and Northern Pike)
DOI: 10.5281/zenodo.4717613
title: Pairwise ADP distances below a threshold in PDB structure 2xtt

description: Pairwise ADP distances below a threshold in PDB structure 2xtt. The list of distances: 1. Euclidean distance is Frobenius’s norm of the difference matrix between <strong>U<sub>A</sub></strong> and <strong>U<sub>B</sub></strong> 2. Riemann distance 3. Log Euclidean distance is Frobenius’s norm of the difference matrix between log(<strong>U<sub>A</sub></strong>) and log(<strong>U<sub>B</sub></strong>) 4. Log Det distance 5. Wasserstein distance 6. Symmetric Kullback-Leibler distance 7. B<sub>eq</sub> distance 8. Eigenvalue distance Pairwise distance with Riemann distance higher than 0.8 were filtered out from the original list.
DOI: 10.5281/zenodo.4717612
title: Pairwise ADP distances below a threshold in PDB structure 2xtt

description: Pairwise ADP distances below a threshold in PDB structure 2xtt. The list of distances: 1. Euclidean distance is Frobenius’s norm of the difference matrix between <strong>U<sub>A</sub></strong> and <strong>U<sub>B</sub></strong> 2. Riemann distance 3. Log Euclidean distance is Frobenius’s norm of the difference matrix between log(<strong>U<sub>A</sub></strong>) and log(<strong>U<sub>B</sub></strong>) 4. Log Det distance 5. Wasserstein distance 6. Symmetric Kullback-Leibler distance 7. B<sub>eq</sub> distance 8. Eigenvalue distance Pairwise distance with Riemann distance higher than 0.8 were filtered out from the original list.
DOI: 10.5281/zenodo.4715668
title: Soil temperature series in Vallon de Nant catchment, Switzerland

description: Soil temperature has been recorded continuously at 4 sites in the Vallon de Nant, Switzerland, from July 21st, 2009 to November 16th, 2018. The elevation of the sites ranges between 1240 and 2640 m asl. All plots are on calcareous bedrock. Dominant species are:<br> T1: montane forest dominated by Fagus sylvatica and Abies alba in overstorey, Sanicula europaea and Oxalis acetosella in understorey.<br> T2: mesohygrophilous, subalpine pasture dominated by Carex ferruginea and Alchemilla vulgaris.<br> T3: lower alpine, mesophilous grassland, dominated by Festuca melanopsis, Sesleria caerulea and Carex ferruginea.<br> T4: upper alpine grassland, dominaed by Salix herbacea, Salix retusa and Polygonum viviparum. Measures are realized every hour using a temperature logger GeoPrecision M-Log5W (GeoPrecision GmbH, Ettlingen, Germany) with an accuracy of +/- 0.1°C @0°C. For more information see http://www.geoprecision.com/en/ Description of files:<br> - coordinates.csv: elevation and geographic coordinates (in WGS84 and CH1903) of the sites, start and end date of each time series and number of missing points.<br> - coordinates.xlsx: same file in xlsx format.<br> - data.csv: timeline (in dd/mm/yyy HH/MM format) and time series of temperatures (in °C) at the 4 sites.<br> - data.xlsx: same file in xlsx format.<br> - matlab_data.mat: data in MatLab format with 't' the timeline, 'data' a matrix of 4 columns with temperature data, and 'alt' and 'name' the altitude and name of the 4 points, respectively.<br> - soil_temperature.png: a plot of the timeseries.<br> - T1_1240m.jpg: picture of the site T1 in the Vallon de Nant.<br> - T2_1530m.jpg: picture of the site T2 in the Vallon de Nant.<br> - T3_2150m.jpg: picture of the site T3 in the Vallon de Nant.<br> - T4_2650m.jpg: picture of the site T4 in the Vallon de Nant. Contact: Pascal Vittoz, Institute of Earth surface dynamics, University of Lausanne; pascal.vittoz@unil.ch
DOI: 10.6084/m9.figshare.14471316
title: Misinformation of GM food on Weibo

description: explanations of the variables:mid: unique identifier for each genetically modified food postcreated_at: the date that the post was createdfalse rumor: false rumor (1) or not false rumor (0)gender: female (1) or male (0)registration_age: days between the date of profile creation and date of the messagestatuses_count: the number of posts posted by this userstatuses_count_per_day: statuses count / registration agefollowers_count: the number of user’s followersfollowees_count: the number of user’s followeesfollowees_count_per_day: number of followees/ registration ageverification: whether Sina Weibo verifies the userfollow_ratio: the logarithmically scaled ratio of followers over followers, log10 (#followers/#following)friends_count: the number of users who have a mutual following relationship with this user sentimentsentiment: negative, neutral, positiveattitudes_count: the number of attitudes on the postcomments_count: the number of comments on the postreposts_count: the number of retweets of the posttopic0: the first topic generated from LDAtopic1: the second topic generated from LDAtopic2: the third topic generated from LDAtopic3: the fourth topic generated from LDAtopic4: the fifth topic generated from LDAtopic5: the sixth topic generated from LDAtopic6: the seventh topic generated from LDAtopic7: the eighth topic generated from LDAtopic8: the ninth topic generated from LDA
DOI: 10.15468/5b8s8c
title: Description of the female of Syrittosyrphus opacea Hull, 1944 (Diptera, Syrphidae, Eristalinae) with additional notes on the genus

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ssymank, Axel, Jordaens, Kurt (2021): Description of the female of Syrittosyrphus opacea Hull, 1944 (Diptera, Syrphidae, Eristalinae) with additional notes on the genus. African Invertebrates 62 (1): 339-353, DOI: http://dx.doi.org/10.3897/AfrInvertebr.62.61504, URL: http://dx.doi.org/10.3897/AfrInvertebr.62.61504
DOI: 10.15468/eretue
title: First record of the rare genus Typhrasa (Psathyrellaceae, Agaricales) from China with description of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Sheng-Nan, Hu *, Ya-Ping, Chen, Jun-Liang, Qi, Liang-Liang, Zeng, Hui, Ding, Hui, Huo, Guang-Hua, Zhang, Lin-Ping, Chen, Fu-Sheng, Yan, Jun-Qing (2021): First record of the rare genus Typhrasa (Psathyrellaceae, Agaricales) from China with description of two new species. MycoKeys 79: 119-128, DOI: http://dx.doi.org/10.3897/mycokeys.79.63700, URL: http://dx.doi.org/10.3897/mycokeys.79.63700
DOI: 10.15468/wwjkm5
title: Castniidae of the Museum of Natural History of the University of Wroclaw: new findings from Friedrich Wilhelm Niepelt's collection with comments on Karl Adolf Georg Lauterbach and August Weberbauer

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gonzalez, Jorge M., Domagala, Pawel J. (2021): Castniidae of the Museum of Natural History of the University of Wroclaw: new findings from Friedrich Wilhelm Niepelt's collection with comments on Karl Adolf Georg Lauterbach and August Weberbauer. Nota Lepidopterologica 44: 123-132, DOI: http://dx.doi.org/10.3897/nl.44.60261, URL: http://dx.doi.org/10.3897/nl.44.60261
DOI: 10.15468/keacgv
title: Antispilina ludwigi Hering, 1941 (Lepidoptera, Heliozelidae) a rare but overlooked European leaf miner of Bistorta officinalis (Polygonaceae): new records, redescription, biology and conservation

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nieukerken, Erik j. van, Wullaert, Steve, Lee, Bong-Woo, Bryner, Rudolf (2021): Antispilina ludwigi Hering, 1941 (Lepidoptera, Heliozelidae) a rare but overlooked European leaf miner of Bistorta officinalis (Polygonaceae): new records, redescription, biology and conservation. Nota Lepidopterologica 44: 99-121, DOI: http://dx.doi.org/10.3897/nl.44.63848, URL: http://dx.doi.org/10.3897/nl.44.63848
DOI: 10.15468/cjvwdp
title: Lizards of a different stripe: phylogenetics of the Pedioplanis undata species complex (Squamata, Lacertidae), with the description of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Childers, Jackie L., Kirchhof, Sebastian, Bauer, Aaron M. (2021): Lizards of a different stripe: phylogenetics of the Pedioplanis undata species complex (Squamata, Lacertidae), with the description of two new species. Zoosystematics and Evolution 97 (1): 249-272, DOI: http://dx.doi.org/10.3897/zse.97.61351, URL: http://dx.doi.org/10.3897/zse.97.61351
DOI: 10.34740/kaggle/dsv/2154509
title: Nepal ICU and Ventilators Occupancy for COVID
DOI: 10.6084/m9.figshare.14479545
title: Data Mesenteric ischemia

description: Dataset for publication in PLOS One: Intraoperatice quality assessment of tissue perfusion with indocynine green (ICG)in a porcine model of mesenteric ischemia PONE-D-21-03376
DOI: 10.6084/m9.figshare.14479545.v1
title: Data Mesenteric ischemia

description: Dataset for publication in PLOS One: Intraoperatice quality assessment of tissue perfusion with indocynine green (ICG)in a porcine model of mesenteric ischemia PONE-D-21-03376
DOI: 10.5281/zenodo.4717693
title: Metals (Hg, As, Se), lipid and nitrogen levels within fish muscular system in two fish species (Striped Bass and Northern Pike)

description: Metals (Hg, As, Se), lipid and nitrogen levels within fish muscular system in two fish species (Striped Bass and Northern Pike)
DOI: 10.5281/zenodo.4717606
title: Metals (Hg, As, Se), lipid and nitrogen levels within fish muscular system in two fish species (Striped Bass and Northern Pike)

description: Metals (Hg, As, Se), lipid and nitrogen levels within fish muscular system in two fish species (Striped Bass and Northern Pike)
DOI: 10.3886/e135741v1-84760
title: Updated Romer-Romer Monetary Policy Shocks

description: The purpose of these files is to extend the Romer-Romer (2004) monetary policy shock series. Program and data are provided without any warranty. Please email jfwieland@ucsd.edu if you find any discrepancies.<br>When using this data in your work, cite Wieland-Yang (2020) along with Romer-Romer (2004) as a reference.<br>Thanks to:1. Yeji Sung for noting a missing match in an earlier version of the code and for alerting me to Philadelphia Fed’s dataset, which includes data for August-October 1972 that was missing in the original Romer-Romer dataset. The values I use differ slightly from the Philadelphia Fed’s. This is because I do not compound annualized growth rates in order to be consistent with the original Greenbook forecasts. 2. Pavel Kapinos for noting that the old target variable was shifted by one meeting from 2004-7.3. Michael McMahon for noting that the May 15th 2001 meeting was incorrectly coded as May 18.<br>Contents:1. RR_monetary_shock_update.doThis code file generates three Stata datasets, RR_monetary_shock_monthly.dta, RR_monetary_shock_quarterly.dta, and RR_monetary_shock_annual.dta. These correspond to the monetary shock series at monthly, quarterly, and annual frequency. Each Stata file contains four variables. The date variable "date", “resid” are the original Romer-Romer (2004) shocks, "resid_romer" are the monetary policy shocks based on the original Romer-Romer (2004) regression, and "resid_full" are the monetary policy shocks based on running the Romer-Romer (2004) regression on the full 1969-2007 sample.<br>2. RRimport.xlsThis is the original Romer-Romer (2004) dataset of Greenbook forecasts updated to 2007. Also includes recently-published data for August-October 1972 that was missing in the original Romer-Romer dataset (these are marked in yellow).<br>3. RRshock_Quarterly_1.txt and RRshock_Quarterly_2.txtThese are Greenbook forecasts downloaded from the FRED database. They are used to check the entries in RRimport.xls.<br>4. ForecastRelease.xlsxContains forecast release dates for meetings where FRED does not have the data.<br>5. RRshock_xls folderThese are the digitized Greenbook forecast from the Philadelphia Fed website. These are used to cross-check the data from FRED and the entries in RRimport.xls.
DOI: 10.6084/m9.figshare.13614452.v5
title: Accelerated extraction of North Atlantic cod and herring, 1520-1790

description: We estimate total landings of two major commercial fish species, North Atlantic cod and Northeast Atlantic herring, c 1520-1790. The fisheries evolved through two phases of Accelerated Marine Extraction in the sixteenth and eighteenth centuries. Total landings more than doubled between 1520 and 1620 from about 220,000 metric tonnes to 460,000 MT. A decline of landings in the second half of the 17th century was likely linked to widespread warfare and climate deterioration. Rapid and sustained growth began again around 1725, and total supplies to the European market peaked in 1788 at more than 1 million MT before the unrest connected with the French Revolution ground many fisheries to a temporary halt. Extractions vastly exceeded previous assessments. The findings shift baseline assumptions about past human impact on marine animals, especially cod.<br><br>
DOI: 10.6084/m9.figshare.14258486.v1
title: Norfish Spanish and Basque Newfoundland Cod Fishery 1520-1790

description: The Spanish data for fishing in Newfoundland in this time period are sparse and severely limited; and quantitative sources are especially rare. Numerous qualitative reports are available based on contemporary observations and reports of fishing undertaken by Spanish fishing crews, as well as several estimates of the scale of this activity made by contemporary observers. Many of these historic estimates and data of fishing in the New World by Spaniards are not presentations of national data but pertain to the fishing effort of sub-national regions: Galicia, Cantabria, Asturias, and in particular the Spanish Basque country, from which the majority of Spanish fishing ventures departed.
DOI: 10.6084/m9.figshare.14260823.v1
title: Norfish Shetland Cod Fishery 1520–1796

description: Shetland is an archipelago situated off the north east coast of Scotland and comprises of several islands, formerly known in Old Norse as Hjaltland, later Hitland. It was referred to as Shetland by English fishers and the name endured. The Danish Sound Toll Tables of the 17th and 18th centuries record that cod and herring catches were exported to the Baltic. While little statistical information is known about the early Shetland fishery, from the 1740s customs records provide figures for exports of cod to Ireland, Scotland and England, and in the latter half of the 18th century increasingly to the Mediterranean.
DOI: 10.6084/m9.figshare.14258504.v1
title: Norfish Portuguese Newfoundland Cod Fishery 1500-1790

description: As is the case for the Spanish and Basque Newfoundland Fishery, the Portuguese data for fishing in Newfoundland in this time period are remarkably minimal. While there are some references to Portuguese fishing voyages during the 16th century, these are qualitative rather than quantitative and do not provide details of the actual size of the fishing fleet, the catches they took or the overall scale of the effort; quantitative data are all but non-existent in surviving sources and existing literature. Generating a complete dataset of annual values for the Portuguese cod fishery must comprise of many computed data points in order to provide a reasonable insight into the probable scale of these fishing activities.
DOI: 10.5281/zenodo.4451766
title: Research Artifact: How are Project-Specific Forums Utilized? A Study of Participation, Content, and Sentiment in the Eclipse Ecosystem

description: <strong>Research Artifact: How are Project-Specific Forums Utilized? A Study of Participation, Content, and Sentiment in the Eclipse Ecosystem</strong> https://github.com/yusufsn/EclipseForumData This is a research artefact for the paper: <strong>How are Project-Specific Forums Utilized? A Study of Participation, Content, and Sentiment in the Eclipse Ecosystem</strong>. This artifact is a repository consisting of collected dataset including (i) 289,061 threads, (ii) 216,864 extracted links from threads, (iii) 2,170 contributors, and the results of our qualitative analysis, (i) 1,142 manually annotated type of discussion and (ii) 1,142 manually annotated sentiment analysis. This artefact aims to enable researchers to replicate our mixed-methods quantitative results of the paper and reuse the dataset for further software engineering research. Contents dataset: <code>289061_threads.csv.zip</code> - 289,061 collected main threads of all users without post from webmaster (.zip format) <code>216864_links.csv.zip</code> - 216,864 extracted links from collected threads (.zip format) <code>2170_contributors.csv</code> - 2,170 list of contributions (.csv format) Results of manual analysis: Manual annotation of discussion type Manual annotation of sentiment analysis Authors Yusuf Sulistyo Nugroho Syful Islam Keitaro Nakasai Ifraz Rehman Hideaki Hata Raula Gaikovina Kula Meiyappan Nagappan Kenichi Matsumoto
DOI: 10.5281/zenodo.4451765
title: Research Artifact: How are Project-Specific Forums Utilized? A Study of Participation, Content, and Sentiment in the Eclipse Ecosystem

description: <strong>Research Artifact: How are Project-Specific Forums Utilized? A Study of Participation, Content, and Sentiment in the Eclipse Ecosystem</strong> https://github.com/yusufsn/EclipseForumData This is a research artefact for the paper: <strong>How are Project-Specific Forums Utilized? A Study of Participation, Content, and Sentiment in the Eclipse Ecosystem</strong>. This artifact is a repository consisting of collected dataset including (i) 289,061 threads, (ii) 216,864 extracted links from threads, (iii) 2,170 contributors, and the results of our qualitative analysis, (i) 1,142 manually annotated type of discussion and (ii) 1,142 manually annotated sentiment analysis. This artefact aims to enable researchers to replicate our mixed-methods quantitative results of the paper and reuse the dataset for further software engineering research. Contents dataset: <code>289061_threads.csv.zip</code> - 289,061 collected main threads of all users without post from webmaster (.zip format) <code>216864_links.csv.zip</code> - 216,864 extracted links from collected threads (.zip format) <code>2170_contributors.csv</code> - 2,170 list of contributions (.csv format) Results of manual analysis: Manual annotation of discussion type Manual annotation of sentiment analysis Authors Yusuf Sulistyo Nugroho Syful Islam Keitaro Nakasai Ifraz Rehman Hideaki Hata Raula Gaikovina Kula Meiyappan Nagappan Kenichi Matsumoto