cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5285/afba2d1d-8a5d-4b96-a6fa-c13b5d8d32cd
title: Labelled data for fine tuning a geological Named Entity Recognition and Entity Relation Extraction model

description: This dataset consists of sentences extracted from BGS memoirs, DECC/OGA onshore hydrocarbons well reports and Mineral Reconnaissance Programme (MRP) reports. The sentences have been annotated to enable the dataset to be used as labelled training data for a Named Entity Recognition model and Entity Relation Extraction model, both of which are Natural Language Processing (NLP) techniques that assist with extracting structured data from unstructured text. The entities of interest are rock formations, geological ages, rock types, physical properties and locations, with inter-relations such as overlies, observedIn. The entity labels for rock formations and geological ages in the BGS memoirs were an extract from earlier published work https://github.com/BritishGeologicalSurvey/geo-ner-model https://zenodo.org/records/4181488 .
The data can be used to fine tune a pre-trained large language model using transfer learning, to create a model that can be used in inference mode to automatically create the labels, thereby creating structured data useful for geological modelling and subsurface characterisation. 
The data is provided in JSONL(Relation) format which is the export format from doccano open source text annotation software (https://doccano.github.io/doccano/) used to create the labels.  The source documents are already publicly available, but the MRP and DECC reports are only published in pdf image form. These latter documents had to undergo OCR and resulted in lower quality text and a lower quality training data. The majority of the labelled data is from the higher quality BGS memoirs text. 
The dataset is a proof of concept. Minimal peer review of the labelling has been conducted so this should not be treated as a gold standard labelled dataset, and it is of insufficient volume to build a performant model. 
The development of this training data and the text processing scripts were supported by a grant from UK Government Office for Technology Transfer (GOTT) Knowledge Asset Grant Fund Project 10083604
DOI: 10.6084/m9.figshare.c.3726187_d4.v1
title: Additional file 13: of Gene and protein analysis reveals that p53 pathway is functionally inactivated in cytogenetically normal Acute Myeloid Leukemia and Acute Promyelocytic Leukemia

description: DEGs related to transcription of p53 gene. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3726190_d2.v1
title: Additional file 2: Figure S2. of Toll-like receptors genes polymorphisms and the occurrence of HCMV infection among pregnant women

description: a and b Representative chromatograms of DNA fragments of various sequenced PCR products, encompassing TLR2 2258 G &gt; A (A, B), TLR4 896 A &gt; G (C, D), TLR4 1196 C &gt; T (E, F) and TLR9 2848 G &gt; A (G-I) SNPs. For TLR2 SNP, DNA forward strands were sequenced, and for TLR4 and TLR9—reverse strands were assayed. The numbers above some peaks of chromatograms indicate the following nucleotides determined in sequenced DNA fragments. Loci of the polymorphisms and genotypes analyzed in the study, are indicated with arrows. GG, GA, AA, AG, CT, CC—genotypes determined in studied TLR SNPs. (ZIP 1732 kb)
DOI: 10.6084/m9.figshare.c.3726166_d4
title: MOESM4 of An immunohistochemical, enzymatic, and behavioral study of CD157/BST-1 as a neuroregulator

description: Additional file 4. Time spent mobile and immobile in the inside zone.
DOI: 10.6084/m9.figshare.c.3726187_d4
title: Additional file 13: of Gene and protein analysis reveals that p53 pathway is functionally inactivated in cytogenetically normal Acute Myeloid Leukemia and Acute Promyelocytic Leukemia

description: DEGs related to transcription of p53 gene. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3726190_d2
title: Additional file 2: Figure S2. of Toll-like receptors genes polymorphisms and the occurrence of HCMV infection among pregnant women

description: a and b Representative chromatograms of DNA fragments of various sequenced PCR products, encompassing TLR2 2258 G &gt; A (A, B), TLR4 896 A &gt; G (C, D), TLR4 1196 C &gt; T (E, F) and TLR9 2848 G &gt; A (G-I) SNPs. For TLR2 SNP, DNA forward strands were sequenced, and for TLR4 and TLR9—reverse strands were assayed. The numbers above some peaks of chromatograms indicate the following nucleotides determined in sequenced DNA fragments. Loci of the polymorphisms and genotypes analyzed in the study, are indicated with arrows. GG, GA, AA, AG, CT, CC—genotypes determined in studied TLR SNPs. (ZIP 1732 kb)
DOI: 10.6084/m9.figshare.c.3726187_d5.v1
title: Additional file 14: of Gene and protein analysis reveals that p53 pathway is functionally inactivated in cytogenetically normal Acute Myeloid Leukemia and Acute Promyelocytic Leukemia

description: DEGs related to transcriptional functioning of p53. (XLS 37 kb)
DOI: 10.6084/m9.figshare.c.3726187_d5
title: Additional file 14: of Gene and protein analysis reveals that p53 pathway is functionally inactivated in cytogenetically normal Acute Myeloid Leukemia and Acute Promyelocytic Leukemia

description: DEGs related to transcriptional functioning of p53. (XLS 37 kb)
DOI: 10.6084/m9.figshare.c.3726187_d6.v1
title: Additional file 15: of Gene and protein analysis reveals that p53 pathway is functionally inactivated in cytogenetically normal Acute Myeloid Leukemia and Acute Promyelocytic Leukemia

description: DEGs related to stability of p53 protein. (XLS 36 kb)
DOI: 10.6084/m9.figshare.c.3726238_d3
title: Additional file 3: of Comparison of angle, shape, and position of articular processes in Dobermans and Great Danes with and without cervical spondylomyelopathy

description: Angle of the cranial and caudal articular surfaces to the reference line for clinically normal Great Danes. Angle measurements for the articular surface of the right (R) and left (L) cranial and caudal articular processes in 15 clinically normal Great Danes (GD-N). (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3726238_d4.v1
title: Additional file 4: of Comparison of angle, shape, and position of articular processes in Dobermans and Great Danes with and without cervical spondylomyelopathy

description: Angle of the cranial and caudal articular surfaces to the reference line for Great Danes with cervical spondylomyelopathy. Angle measurements for the articular surface of the right (R) and left (L) cranial and caudal articular processes in 15 Great Danes with cervical spondylomyelopathy (GD-CSM). (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3726238_d4
title: Additional file 4: of Comparison of angle, shape, and position of articular processes in Dobermans and Great Danes with and without cervical spondylomyelopathy

description: Angle of the cranial and caudal articular surfaces to the reference line for Great Danes with cervical spondylomyelopathy. Angle measurements for the articular surface of the right (R) and left (L) cranial and caudal articular processes in 15 Great Danes with cervical spondylomyelopathy (GD-CSM). (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3726238_d5.v1
title: Additional file 5: of Comparison of angle, shape, and position of articular processes in Dobermans and Great Danes with and without cervical spondylomyelopathy

description: Distance from the lateral edge of the cranial and caudal articular surfaces to the reference line for clinically normal Doberman Pinschers. Distance (in centimeters) from the lateral edge of the articular surface of the right and left cranial and caudal articular processes to the reference line in 15 clinically normal Doberman Pinschers (Dob-N). (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3726238_d5
title: Additional file 5: of Comparison of angle, shape, and position of articular processes in Dobermans and Great Danes with and without cervical spondylomyelopathy

description: Distance from the lateral edge of the cranial and caudal articular surfaces to the reference line for clinically normal Doberman Pinschers. Distance (in centimeters) from the lateral edge of the articular surface of the right and left cranial and caudal articular processes to the reference line in 15 clinically normal Doberman Pinschers (Dob-N). (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3726259_d1.v1
title: Additional file 1: of Inflammatory signature of cerebellar neurodegeneration during neonatal hyperbilirubinemia in Ugt1
                     
                -/-
               mouse model

description: Table listing the oligonucleotides used. (XLSX 13 kb)
DOI: 10.57707/fmi-b2share.20d2d58e645e4076a7caeb86b5626fd8
title: REMS-H (MSL/Curiosity) recalibrated humidity dataset

description: Recalibrated data of the REMS-H relative humidity sensor of the Mars Science Laboratory (MSL) Curiosity rover. The dataset is based on the raw sensor data available in NASA's data product archive Planetary Data System (PDS). A detailed description of the dataset and the recalibration process is presented in the manuscript "REMS-H Revisited: Updated calibration and results of the humidity sensor of the MSL Curiosity" by Hieta et al. (submitted to Space Science Reviews). The dataset includes the relative humidity and temperature of the sensor, the derived water vapor volume mixing ratio and uncertainties.
DOI: 10.6084/m9.figshare.c.3726307_d3.v1
title: Additional file 3 of MeDeCom: discovery and quantification of latent components of heterogeneous methylomes

description: CpGs used for the analysis of memory and naive B cells. A comma-separated value table file. (CSV 35 kb)
DOI: 10.6084/m9.figshare.c.3726307_d4.v1
title: Additional file 4 of MeDeCom: discovery and quantification of latent components of heterogeneous methylomes

description: LMC-specific CpG positions of the FC1 data set. A comma-separated value table file. (CSV 256 kb)
DOI: 10.6084/m9.figshare.c.3727537_d4
title: Additional file 4: Table S3. of Network-based analysis of transcriptional profiles from chemical perturbations experiments

description: Aggregate Network-related modules with connectivity specifically altered by compound groups. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3727531_d2.v1
title: Additional file 11: Table S9. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: PFEs discarded from the genome-wide analysis. PFEs identified in non-homologous genes in the human and zebrafish genomes, removed from the genome-wide analysis. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3727513_d8.v1
title: Additional file 5 of The autophagy interaction network of the aging model Podospora anserina

description: Results and statistic of topological and random network analysis. The file contains all topological values of each randomly generated network. In addition, the results of the comparison of the predicted network with the random networks are provided. (XLS 1896 kb)
DOI: 10.6084/m9.figshare.c.3727513_d8
title: Additional file 5 of The autophagy interaction network of the aging model Podospora anserina

description: Results and statistic of topological and random network analysis. The file contains all topological values of each randomly generated network. In addition, the results of the comparison of the predicted network with the random networks are provided. (XLS 1896 kb)
DOI: 10.6084/m9.figshare.c.3727531_d2
title: Additional file 11: Table S9. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: PFEs discarded from the genome-wide analysis. PFEs identified in non-homologous genes in the human and zebrafish genomes, removed from the genome-wide analysis. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3727537_d5.v1
title: Additional file 5: Table S4. of Network-based analysis of transcriptional profiles from chemical perturbations experiments

description: Comparison of genes and gene sets identified as differentially connected in the network-based approach and by the standard differential expression analysis. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3727513_d9.v1
title: Additional file 6 of The autophagy interaction network of the aging model Podospora anserina

description: Lists of reference proteins and interactions. The file contains each protein and interaction from both reference species, which initially had been used for network prediction. UniProt accession numbers were used as identifiers for proteins of yeast and human. (XLS 133 kb)
DOI: 10.6084/m9.figshare.c.3727537_d5
title: Additional file 5: Table S4. of Network-based analysis of transcriptional profiles from chemical perturbations experiments

description: Comparison of genes and gene sets identified as differentially connected in the network-based approach and by the standard differential expression analysis. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3727513_d9
title: Additional file 6 of The autophagy interaction network of the aging model Podospora anserina

description: Lists of reference proteins and interactions. The file contains each protein and interaction from both reference species, which initially had been used for network prediction. UniProt accession numbers were used as identifiers for proteins of yeast and human. (XLS 133 kb)
DOI: 10.6084/m9.figshare.c.3727513_d10.v1
title: Additional file 7 of The autophagy interaction network of the aging model Podospora anserina

description: Parameter fitting. The results of the parameter fitting approach are given, including the lower and upper bounds of the E-values, their logarithms to the base 10, the differences between the logarithmic upper and lower bounds as well as the number of proteins and interactions in the reference KEGG network and in the predicted network. The parameters we have applied for the prediction approach in Path2PPI are highlighted red. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3727513_d10
title: Additional file 7 of The autophagy interaction network of the aging model Podospora anserina

description: Parameter fitting. The results of the parameter fitting approach are given, including the lower and upper bounds of the E-values, their logarithms to the base 10, the differences between the logarithmic upper and lower bounds as well as the number of proteins and interactions in the reference KEGG network and in the predicted network. The parameters we have applied for the prediction approach in Path2PPI are highlighted red. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3727585_d3.v1
title: Additional file 3: of From good health to illness with post-infectious fatigue syndrome: a qualitative study of adultsâ   experiences of the illness trajectory

description: The interview guide. (XML 237 kb)
DOI: 10.6084/m9.figshare.c.3727600_d1
title: Additional file 1: of Validation of the Pittsburgh sleep quality index in community dwelling Ethiopian adults

description: The dataset used in validation of the Pittsburgh Sleep Quality Index in the community dwelling Ethiopian adults. (SAV 22Â kb)
DOI: 10.6084/m9.figshare.c.3727597_d2.v1
title: Additional file 2: Table S1. of Herboxidiene triggers splicing repression and abiotic stress responses in plants

description: includes information for primers used in this paper. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3727585_d3
title: Additional file 3: of From good health to illness with post-infectious fatigue syndrome: a qualitative study of adultsâ   experiences of the illness trajectory

description: The interview guide. (XML 237 kb)
DOI: 10.6084/m9.figshare.c.3727597_d2
title: Additional file 2: Table S1. of Herboxidiene triggers splicing repression and abiotic stress responses in plants

description: includes information for primers used in this paper. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3727654_d10
title: MOESM4 of Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

description: Additional file 4. Mean and standard deviation (SD) of extracellular compounds during fermentations at different time points.
DOI: 10.6084/m9.figshare.c.3727654_d15.v1
title: MOESM9 of Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

description: Additional file 9. Genetic and kinetic parameter information for Saccharomyces strains.
DOI: 10.6084/m9.figshare.c.3674959_d7.v1
title: statistics activation curve.xlsx

description: Calculation of the Na<sub>v </sub>activation curve.
DOI: 10.6084/m9.figshare.c.3727654_d15
title: MOESM9 of Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

description: Additional file 9. Genetic and kinetic parameter information for Saccharomyces strains.
DOI: 10.6084/m9.figshare.c.3674959_d7
title: statistics activation curve.xlsx

description: Calculation of the Na<sub>v </sub>activation curve.
DOI: 10.6084/m9.figshare.c.3728635_d1.v1
title: Additional file 1: of The impact of ocular trauma during the Nepal earthquake in 2015

description: Is the Raw Data of Earthquake victims treated at Tilganga Institute of Ophthalmology in Kathmandu in 2015. The file includes two sheets, the Data sheet and Coding sheet. The Data Sheet includes data of each patient in terms of age, sex, address, the timing of trauma and the timing of treatment in the hospital, as well as the vision of the affected eye, laterality, management and the final vision. The Coding sheet covers the code for each parameter. The data of personal identity information will not be made available in order to protect the patientsâ   privacy. (XLS 38Â kb)
DOI: 10.6084/m9.figshare.c.3728674_d3.v1
title: Additional file 12: Table S11. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment of genes associated with Old-DR-related hypermethylation. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3728674_d3
title: Additional file 12: Table S11. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment of genes associated with Old-DR-related hypermethylation. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3728674_d4.v1
title: Additional file 13: Table S12. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment of genes associated with Old DR-related hypomethylation. (XLSX 93 kb)
DOI: 10.6084/m9.figshare.c.3728674_d4
title: Additional file 13: Table S12. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment of genes associated with Old DR-related hypomethylation. (XLSX 93 kb)
DOI: 10.6084/m9.figshare.c.3728674_d5.v1
title: Additional file 14: Table S13. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Genes with DR-induced whole gene body methylation differences. (XLSX 57 kb)
DOI: 10.15468/dl.py4ek4
title: Occurrence Download

description: A dataset containing 58662579 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((67.55251 4.92922,99.20308 4.92922,99.20308 37.54899,67.55251 37.54899,67.55251 4.92922))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 58662579 records from 2734 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038646-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17861/db813826-e45d-4274-b4c3-7ecdbf2336a5
title: PRIME Survey Dataset of Minoritised Ethnic People’s Engagement with Online Services

description: This dataset contains the final anonymised survey dataset and supporting documentation collected through the PRIME Toolkit, as part of the EPSRC funded project: Protecting Minority Ethnic Communities Online (PRIME) and grant number EP/W032333/1.
DOI: 10.15468/dl.azpmad
title: Occurrence Download

description: A dataset containing 1247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja aleutica (Gilbert, 1896)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1247 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009933-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dyxkxj
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "Geometry POLYGON((-56.35872 -22.36984,-53.38159 -18.46236,-53.25754 -17.71807,-53.52631 -17.26323,-54.74611 -15.5059,-55.63511 -14.24475,-57.64054 -14.05868,-58.55022 -14.94769,-57.68189 -17.26323,-58.0747 -22.16309,-56.35872 -22.36984))",
 "TaxonKey is Creagrutus Günther, 1864"
 ]
}

 The dataset includes 79 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002470-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gndk7z
title: Occurrence Download

description: A dataset containing 554274 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Albania",
 "Country is Armenia",
 "Country is Austria",
 "Country is Azerbaijan",
 "Country is Belarus",
 "Country is Belgium",
 "Country is Bosnia and Herzegovina",
 "Country is Bulgaria",
 "Country is Croatia",
 "Country is Cyprus",
 "Country is Czechia",
 "Country is Denmark",
 "Country is Estonia",
 "Country is Finland",
 "Country is France",
 "Country is Georgia",
 "Country is Germany",
 "Country is Greece",
 "Country is Hungary",
 "Country is Iceland",
 "Country is Ireland",
 "Country is Italy",
 "Country is Latvia",
 "Country is Lithuania",
 "Country is Luxembourg",
 "Country is North Macedonia",
 "Country is Malta",
 "Country is Montenegro",
 "Country is Moldova, Republic of",
 "Country is Netherlands",
 "Country is Norway",
 "Country is Poland",
 "Country is Portugal",
 "Country is Romania",
 "Country is Russian Federation",
 "Country is Serbia",
 "Country is Slovakia",
 "Country is Slovenia",
 "Country is Spain",
 "Country is Sweden",
 "Country is Switzerland",
 "Country is Türkiye",
 "Country is Ukraine",
 "Country is United Kingdom of Great Britain and Northern Ireland"
 ]
 },
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Juniperus foetidissima Willd.",
 "TaxonKey is Juniperus oxycedrus L.",
 "TaxonKey is Larix decidua Mill.",
 "TaxonKey is Liquidambar orientalis Mill.",
 "TaxonKey is Malus sylvestris Mill.",
 "TaxonKey is Ostrya carpinifolia Scop.",
 "TaxonKey is Phoenix theophrasti Greuter",
 "TaxonKey is Picea abies (L.) H.Karst.",
 "TaxonKey is Picea omorika (Pancic) Purk.",
 "TaxonKey is Picea orientalis (L.) Peterm.",
 "TaxonKey is Picea sitchensis (Bong.) Carrière",
 "TaxonKey is Pinus brutia Ten.",
 "TaxonKey is Pinus cembra L."
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 554274 records from 715 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043319-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wffpg
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Etrumeus golanii DiBattista, Randall & Bowen, 2012"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0261863-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.