cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25107869
title: <b>Spatial and temporal variability in size structure and some reproductive traits of kawakawa and skipjack tuna in the Western Indian Ocean</b>

description: The artisanal fishery in the Western Indian Ocean (WIO) benefits from tuna species of great economic value, such as skipjack (<i>Katsuwonus pelamis</i>) and kawakawa <i>(Euthynnus affinnis</i>). These two species are highly targeted by fishers hence information on fish reproduction, such as size at maturity, is critical for informing management decisions. This study assessed the geographic variation in several reproductive traits of skipjack and kawakawa in the WIO using samples collected from artisanal tuna fishers in Kenya, Tanzania, and Mozambique, and recreational fishers in South Africa. Results revealed variations in the size structure of skipjack and kawakawa between countries, which may be attributed to gear selectivity because of gear type preferences by the fishers among other factors. The sex ratio of both skipjack and kawakawa landed was skewed towards males. Females and males skipjack matured at 42.0 and 47cm (FL) whilst females and males kawakawa matured at 44.0 and 45.3 cm (FL) respectively. The reproductive capability of both species was recorded throughout the year at all the study sites, but peaks were observed during Northeast Monsoon (NEM) season. Our findings reveal variations in some reproductive characteristics of skipjack and kawakawa between the WIO countries, highlighting the need for specific management strategies for each country within the region.
DOI: 10.6084/m9.figshare.25107869.v1
title: <b>Spatial and temporal variability in size structure and some reproductive traits of kawakawa and skipjack tuna in the Western Indian Ocean</b>

description: The artisanal fishery in the Western Indian Ocean (WIO) benefits from tuna species of great economic value, such as skipjack (<i>Katsuwonus pelamis</i>) and kawakawa <i>(Euthynnus affinnis</i>). These two species are highly targeted by fishers hence information on fish reproduction, such as size at maturity, is critical for informing management decisions. This study assessed the geographic variation in several reproductive traits of skipjack and kawakawa in the WIO using samples collected from artisanal tuna fishers in Kenya, Tanzania, and Mozambique, and recreational fishers in South Africa. Results revealed variations in the size structure of skipjack and kawakawa between countries, which may be attributed to gear selectivity because of gear type preferences by the fishers among other factors. The sex ratio of both skipjack and kawakawa landed was skewed towards males. Females and males skipjack matured at 42.0 and 47cm (FL) whilst females and males kawakawa matured at 44.0 and 45.3 cm (FL) respectively. The reproductive capability of both species was recorded throughout the year at all the study sites, but peaks were observed during Northeast Monsoon (NEM) season. Our findings reveal variations in some reproductive characteristics of skipjack and kawakawa between the WIO countries, highlighting the need for specific management strategies for each country within the region.
DOI: 10.6084/m9.figshare.24764388.v1
title: Risk of introduction and establishment of alien vertebrate species in transboundary neighboring areas

description: There are 3 layer files in geodatabase file generated by ArcGIS Pro v.2.5.2, including origin data for identifying the introduction, establishment, and overall invasion risk at a spatial resolution of 0.5°and 1° grids. In addition, the layer file also shows the data about the richness and risk level of various groups of establishment alien vertebrates among grids and pairwise borders. The Excel data describing details of layer files, named “Data_information” is also included in the compressed file.
DOI: 10.6084/m9.figshare.23896062
title: P2 Malaria NET Mendeley Data

description: Mendeley Data, including WB, IF, HE images
DOI: 10.6084/m9.figshare.23896062.v1
title: P2 Malaria NET Mendeley Data

description: Mendeley Data, including WB, IF, HE images
DOI: 10.6084/m9.figshare.25108208
title: Supplementary Material for: Evidence in focus: The sparse landscape of randomized trials on retinoblastoma treatment.

description: Background: Retinoblastoma, although rare, is one of the most common intraocular malignancies worldwide. Its prognosis has improved significantly in the past few decades, thanks to modern treatments, like systemic, intraarterial and intravitreal chemotherapy. However, regarding survival, there are significant differences between high- and low-income countries, eye salvage is still a challenge worldwide, and treatment-related toxicity needs to be carefully and sufficiently managed.
Summary: To appraise the strength of supporting evidence, we performed a systematic review of randomized controlled trials investigating any therapeutic protocol for retinoblastoma. Four trials with 174 participants (188 eyes) were eligible, all pertaining to different intravenous chemotherapy regimens. Vincristine, etoposide and carboplatin (VEC) appear superior to a 5-drug combination for stage III retinoblastoma. Moreover, etoposide and carboplatin as neoadjuvant chemotherapy followed by thermochemotherapy seem to offer better local control than vincristine and carboplatin. However, increasing carboplatin dose in the VEC protocol failed to improve treatment efficacy. 
Key Messages: Retinoblastoma is a success story of modern medicine. However, only intravenous chemotherapy has been studied through randomized trials, while evidence for the most novel retinoblastoma treatments has mainly stemmed from observational studies. International collaborations for multicenter randomized trials could overcome difficulties and increase certainty and precision in the field.
DOI: 10.6084/m9.figshare.25108208.v1
title: Supplementary Material for: Evidence in focus: The sparse landscape of randomized trials on retinoblastoma treatment.

description: Background: Retinoblastoma, although rare, is one of the most common intraocular malignancies worldwide. Its prognosis has improved significantly in the past few decades, thanks to modern treatments, like systemic, intraarterial and intravitreal chemotherapy. However, regarding survival, there are significant differences between high- and low-income countries, eye salvage is still a challenge worldwide, and treatment-related toxicity needs to be carefully and sufficiently managed.
Summary: To appraise the strength of supporting evidence, we performed a systematic review of randomized controlled trials investigating any therapeutic protocol for retinoblastoma. Four trials with 174 participants (188 eyes) were eligible, all pertaining to different intravenous chemotherapy regimens. Vincristine, etoposide and carboplatin (VEC) appear superior to a 5-drug combination for stage III retinoblastoma. Moreover, etoposide and carboplatin as neoadjuvant chemotherapy followed by thermochemotherapy seem to offer better local control than vincristine and carboplatin. However, increasing carboplatin dose in the VEC protocol failed to improve treatment efficacy. 
Key Messages: Retinoblastoma is a success story of modern medicine. However, only intravenous chemotherapy has been studied through randomized trials, while evidence for the most novel retinoblastoma treatments has mainly stemmed from observational studies. International collaborations for multicenter randomized trials could overcome difficulties and increase certainty and precision in the field.
DOI: 10.5281/zenodo.10579449
title: Left atrial geometries

description: Uploaded files are 30 patient-specific left atrial geometries. Each file contains 10 surfaces in STL format which represents the whole cardiac cycle. These geometries have been used to test left atrial regionalization and to compute left atriuma nd left atrial appendage contraction parameters under the consortium of MSCA PersonalizeAF project.
DOI: 10.5281/zenodo.10579450
title: Left atrial geometries

description: Uploaded files are 30 patient-specific left atrial geometries. Each file contains 10 surfaces in STL format which represents the whole cardiac cycle. These geometries have been used to test left atrial regionalization and to compute left atriuma nd left atrial appendage contraction parameters under the consortium of MSCA PersonalizeAF project.
DOI: 10.11583/dtu.21740453
title: Planar Room Impulse Response Dataset - ACT, DTU Electro (b. 355 r. 008)

description: Dataset of Room Impulse Responses measured at the Acoustic Technology group facilities, DTU Electro. The measurements were carried out in building 355, room 008, otherwise known as the "sound field control" room.<br>
<br>
The dataset consists of measurements of the acoustic impulse response in a regular square grid of 80x80 cm<sup>2</sup>. The measurements consist of 30x30 room impulse responses (e.g. 900 RIRs) where the microphone, a 1/2 inch free field condenser measurement microphone (Br\"uel\&Kj\"aer, N\ae rum, Denmark) was automatically positioned using a UR5 (Universal Robots, Odense, Denmark) scanning robotic arm. A BM6 loudspeaker (Dynaudio, Skanderborg, Denmark) placed in a room corner was used to excite the room with 5s wideband logarithmic sweeps.  
<br>
The data are available as H5 (Hierarchical Data Formats) with the following structure:
<br>
Dataset "Sound field control room - HDF5 datastructure"<br>
<br>
Dataset.attributes<br>
   ├── calibration (1) '94.33 dB @ 1.14 kHz'<br>
   ├── fs (1) 48000 Hz<br>
   ├── grid_bottom (3x900) [[2.76, 2.32, 2.73, ...  2.738 2.76..., ...]] m<br>
   ├── loudspeaker_position (3) [5.779 0.263 0.904] m<br>
   ├── room_dimensions (3)  [6.124 5.771 3.073] m<br>
   ├── sweep_amplitude (1) 0.4<br>
   ├── sweep_duration (1) 5 s<br>
   ├── sweep_range (2) [32. 12000.] Hz<br>
   ├── temperature (1) 20.3 °C<br>
   └── true_calibration (1) '94.19 dB @ 1.17 kHz'<br>
Dataset.groups<br>
   ├── Noise_recs_bottom (12x3x144000) float64<br>
   ├── RIRs_bottom (900x25439) float64 (e.g. 900 positions)<br>
   └── sweep_signal (288000) float64<br>
<br>

Use with Matlab: https://mathworks.com/help/matlab/hdf5-files.html 
Use with Python: https://docs.h5py.org/en/stable/
<br>
This dataset is part of the project <em>Danish Sound Cluster </em>project titled "<strong>Physics-informed Neural Networks for Sound Field Reconstruction</strong>" [url]. Find more datasets here: Project Page
DOI: 10.11583/dtu.21740453.v1
title: Planar Room Impulse Response Dataset - ACT, DTU Electro (b. 355 r. 008)

description: Dataset of Room Impulse Responses measured at the Acoustic Technology group facilities, DTU Electro. The measurements were carried out in building 355, room 008, otherwise known as the "sound field control" room.<br>
<br>
The dataset consists of measurements of the acoustic impulse response in a regular square grid of 80x80 cm<sup>2</sup>. The measurements consist of 30x30 room impulse responses (e.g. 900 RIRs) where the microphone, a 1/2 inch free field condenser measurement microphone (Br\"uel\&Kj\"aer, N\ae rum, Denmark) was automatically positioned using a UR5 (Universal Robots, Odense, Denmark) scanning robotic arm. A BM6 loudspeaker (Dynaudio, Skanderborg, Denmark) placed in a room corner was used to excite the room with 5s wideband logarithmic sweeps.  
<br>
The data are available as H5 (Hierarchical Data Formats) with the following structure:
<br>
Dataset "Sound field control room - HDF5 datastructure"<br>
<br>
Dataset.attributes<br>
   ├── calibration (1) '94.33 dB @ 1.14 kHz'<br>
   ├── fs (1) 48000 Hz<br>
   ├── grid_bottom (3x900) [[2.76, 2.32, 2.73, ...  2.738 2.76..., ...]] m<br>
   ├── loudspeaker_position (3) [5.779 0.263 0.904] m<br>
   ├── room_dimensions (3)  [6.124 5.771 3.073] m<br>
   ├── sweep_amplitude (1) 0.4<br>
   ├── sweep_duration (1) 5 s<br>
   ├── sweep_range (2) [32. 12000.] Hz<br>
   ├── temperature (1) 20.3 °C<br>
   └── true_calibration (1) '94.19 dB @ 1.17 kHz'<br>
Dataset.groups<br>
   ├── Noise_recs_bottom (12x3x144000) float64<br>
   ├── RIRs_bottom (900x25439) float64 (e.g. 900 positions)<br>
   └── sweep_signal (288000) float64<br>
<br>

Use with Matlab: https://mathworks.com/help/matlab/hdf5-files.html 
Use with Python: https://docs.h5py.org/en/stable/
<br>
This dataset is part of the project <em>Danish Sound Cluster </em>project titled "<strong>Physics-informed Neural Networks for Sound Field Reconstruction</strong>" [url]. Find more datasets here: Project Page
DOI: 10.11583/dtu.21740453.v2
title: Planar Room Impulse Response Dataset - ACT, DTU Electro (b. 355 r. 008)

description: Dataset of Room Impulse Responses measured at the Acoustic Technology group facilities, DTU Electro. The measurements were carried out in building 355, room 008, otherwise known as the "sound field control" room.<br>
<br>
The dataset consists of measurements of the acoustic impulse response in a regular square grid of 80x80 cm<sup>2</sup>. The measurements consist of 30x30 room impulse responses (e.g. 900 RIRs) where the microphone, a 1/2 inch free field condenser measurement microphone (Br\"uel\&Kj\"aer, N\ae rum, Denmark) was automatically positioned using a UR5 (Universal Robots, Odense, Denmark) scanning robotic arm. A BM6 loudspeaker (Dynaudio, Skanderborg, Denmark) placed in a room corner was used to excite the room with 5s wideband logarithmic sweeps.  
<br>
The data are available as H5 (Hierarchical Data Formats) with the following structure:
<br>
Dataset "Sound field control room - HDF5 datastructure"<br>
<br>
Dataset.attributes<br>
   ├── calibration (1) '94.33 dB @ 1.14 kHz'<br>
   ├── fs (1) 48000 Hz<br>
   ├── grid_bottom (3x900) [[2.76, 2.32, 2.73, ...  2.738 2.76..., ...]] m<br>
   ├── loudspeaker_position (3) [5.779 0.263 0.904] m<br>
   ├── room_dimensions (3)  [6.124 5.771 3.073] m<br>
   ├── sweep_amplitude (1) 0.4<br>
   ├── sweep_duration (1) 5 s<br>
   ├── sweep_range (2) [32. 12000.] Hz<br>
   ├── temperature (1) 20.3 °C<br>
   └── true_calibration (1) '94.19 dB @ 1.17 kHz'<br>
Dataset.groups<br>
   ├── Noise_recs_bottom (12x3x144000) float64<br>
   ├── RIRs_bottom (900x25439) float64 (e.g. 900 positions)<br>
   └── sweep_signal (288000) float64<br>
<br>

Use with Matlab: https://mathworks.com/help/matlab/hdf5-files.html 
Use with Python: https://docs.h5py.org/en/stable/
<br>
This dataset is part of the project <em>Danish Sound Cluster </em>project titled "<strong>Physics-informed Neural Networks for Sound Field Reconstruction</strong>" [url]. Find more datasets here: Project Page
DOI: 10.11583/dtu.21740645
title: Planar Room Impulse Response Dataset - ACT, DTU Electro (b. 355 r. 008) - Source 2

description: Dataset of Room Impulse Responses measured at the Acoustic Technology group facilities, DTU Electro. The measurements were carried out in building 355, room 008, otherwise known as the "sound field control" room.<br> The dataset consists of measurements of the acoustic impulse response in a regular square grid of 80x80 cm2. The measurements consist of 30x30 room impulse responses (e.g. 900 RIRs) where the microphone, a 1/2 inch free field condenser measurement microphone (Br\"uel\&Kj\"aer, N\ae rum, Denmark) was automatically positioned using a UR5 (Universal Robots, Odense, Denmark) scanning robotic arm. A Odeon Omni loudspeaker (Odeon, Lyngby, Denmark) placed in a room corner was used to excite the room with 4s wideband logarithmic sweeps. <br> The data are available as H5 (Hierarchical Data Formats) with the following structure: <br> Dataset "Sound field control room (Odeon source) - HDF5 datastructure"<br> <br> Dataset.attributes<br> ├── calibration (1) '94.33 dB @ 1.14 kHz'<br> ├── fs (1) 48000 Hz<br> ├── grid_bottom (3x900) [[2.766, 2.32, 2.73, ... 2.738, 2.76..., ...]] m<br> ├── loudspeaker_position (3) [5.779 0.263 0.904] m<br> ├── room_dimensions (3) [6.124 5.771 3.073] m<br> ├── sweep_amplitude (1) 0.15<br> ├── sweep_duration (1) 4.5 s<br> ├── sweep_range (2) [63 8300] Hz<br> ├── temperature (1) 20 °C<br> └── true_calibration (1) '94.19 dB @ 1.17 kHz'<br> Dataset.groups<br> ├── Noise_recs_bottom (12x3x144000) float64<br> ├── RIRs_bottom (900x27840) float64 (e.g. 900 positions)<br> └── sweep_signal (264000) float64<br> <br> Use with Matlab: https://mathworks.com/help/matlab/hdf5-files.html Use with Python: https://docs.h5py.org/en/stable/<br> This dataset is part of the project <em>Danish Sound Cluster </em>project titled "<strong>Physics-informed Neural Networks for Sound Field Reconstruction</strong>" [url]. Find more datasets here: Project Page
DOI: 10.6084/m9.figshare.25108205
title: Vector analysis of corneal astigmatism in cataractous eyes based in IOLMaster 700 biometry - PlosONE

description: This minimal dataset is used to retrieve the results presented in PlosONE PONE-D-23-32750
DOI: 10.6084/m9.figshare.25108262
title: Supplementary Material for: Optimizing post-acute coronary syndrome (ACS) dyslipidemia management: Insights from the North American Acute Coronary Syndrome ACS Reflective III

description: Background: Despite contemporary practice guidelines, a substantial number of post-acute coronary syndrome (ACS) patients fail to achieve guideline-recommended LDL-C thresholds. Our study aims to objectively investigate this evidence-to-practice care gap. Specifically, we aim to identify opportunities where additional lipid-lowering therapies are indicated and explore reasons for the non-prescription of guideline-recommended therapies.

Methods: ACS patients with LDL-C ≥1.81 mmol/L (70 mg/dL) despite maximally tolerated statin ± ezetimibe therapy (including those intolerant of ≥2 statins) were enrolled 1-12 months post-event from 27 Canadian and United States (U.S.) sites from September 2018 to October 2020 and followed up for three visits during the 12 months post-event. We determined the proportion of patients who did not achieve Canadian/U.S. guideline-recommended LDL-C thresholds, the number of patients who would have been eligible for additional lipid-lowering therapies, and reasons behind lack of escalation in lipid-lowering therapies when indicated. Individual patient and aggregate practice feedback, including guideline-recommended intensification suggestions were provided to each physician.

Results: Of the 248 patients enrolled in the pilot study (median age 64 [57, 73] years, 31.5% ¬¬¬¬-female and STEMI 27.4%), 75.4% were on high-intensity statins on the first visit. 18.5% of those who attended all 3 visits had an LDL-C measured only at the first visit which was above the threshold. After one year of follow-up, 51.9% of patients achieved LDL-C thresholds at either visit 2 or 3. In the context of feedback reminding physicians about guideline-directed LDL-C-modifying therapy in their individual participating patients, we observed an increase in the use of ezetimibe and PCSK9 inhibitor therapy at 3-12 months. This was associated with a significant lowering of the mean LDL-C (from 2.93 mmol/L [baseline] to 2.09 mmol/L [3-6 months] to 1.87 mmol/L [6-12 months]) and a significantly greater proportion of patients (from 0% [baseline] to 38.6% [3-6 months] to 53.4% [6-12 months]) achieving guideline-recommended LDL-C thresholds. The most prevalent reasons behind the non-intensification of LDL-C lowering therapy with ezetimibe and/or PCSK9i were LDL-C levels being close to target, the pre-existing use of other lipid-lowering therapies, patient refusal, and cost. 

Conclusion: Although most patients post-ACS are on high-intensity statin therapy, almost 50% failed to achieve guideline-recommended LDL-C thresholds by 1-year follow-up. Furthermore, additional lipid-lowering therapies in this high-risk group were underprescribed, and this may be linked to several factors including potential gaps in physician knowledge, treatment inertia, patient refusal, and cost.
DOI: 10.5281/zenodo.10302173
title: Survey data on attitudes towards salmon aquaculture industry in Norway, Iceland, and Tasmania (AU)

description: The following data is from an online survey conducted in Norway, Tasmania (Australia), and Iceland. Respondents were recruited by survey companies that distributed e-mail invitations to their panels. A minimum respondent quotas was established for each region, with individuals under the age of 18 being exluded from participating in the survey. The dataset consists of a total of 2085 respondents, comprising 1183 participants from Norway, 406 from Tasmania, and 496 from Iceland. Questions were presented in their respective native language, namely Norwegian, English, and Icelandic.

This survey data encompasses various aspects of perceptions of salmon aquaculture industry. Data was generated by the SoLic (Social License to operate for aquaculture) project (2019 - 2022), and funded by The Research Council of Norway (no. 295114). The survey was designed by the SoLic project group. 

The data and supplementary material is divided in 3 files:

The raw survey data in .csv file format (Dataset Solic_2085 respondents.csv). The data file contains 71 variables and data from each of the 2085 respondents. Blank entries in the dataset indicate either a lack of response from the respondents or that specific questions were not applicable to certain respondents (questions exclusively posed to respondents in one country).

Overview of survey questions and answer options (Survey.doc). The survey encompassed 28 questions related to the aquaculture industry, along with demographics, respondents’ knowledge of industry, trust in governance system, and environmental concerns. Some demographic variables were sourced from the existing panel data, while others were provided to respondents for their input.

The codebook (Codebook.doc). The codebook provides explanations and details regarding all variables included in the survey data file. It includes coding information for each survey question, response options provided in the raw data, and further clarifies the purpose and origin of variables computed by the research group (e.g., variable on aquaculture municipality) or the survey company (e.g., weight variables for data from Norway and Iceland). When used in conjunction with the raw data, this codebook serves as a valuable guide for navigating the dataset.
DOI: 10.5281/zenodo.10589148
title: Resources for BMF Collaborative Project 67: Anthropocentrism, virtual world behaviors, and game-playing immersiveness
DOI: 10.5281/zenodo.10589165
title: Resources for BMF Collaborative Project 66: Exceptionalism, virtual world behaviors, and game-playing immersiveness
DOI: 10.6084/m9.figshare.25108247
title: Field observations of mesozooplankton in the Kuroshio extension regions in spring, 2015

description: This data showed the zooplankton community and functional traits in the Kuroshio extension regions.
DOI: 10.6084/m9.figshare.25108247.v1
title: Field observations of mesozooplankton in the Kuroshio extension regions in spring, 2015

description: This data showed the zooplankton community and functional traits in the Kuroshio extension regions.
DOI: 10.5281/zenodo.10589178
title: Resources for BMF Collaborative Project 65: Factors influencing the formation of climate change belief among Nepalese smallholder farmers
DOI: 10.5281/zenodo.8406421
title: Spatial restrictions inadvertently doubled the carbon footprint of Norway's mackerel fishing fleet: data and code for analysis and visualisation

description: Data and code for analysis accompanying the paper "Spatial restrictions inadvertently doubled the carbon footprint of Norway's mackerel fishing fleet", Scherrer et al. (2024) Marine Policy. https://doi.org/10.1016/j.marpol.2024.106014.

Created by Kim Scherrer and Tom Langbehn.
DOI: 10.5281/zenodo.8406422
title: Spatial restrictions inadvertently doubled the carbon footprint of Norway's mackerel fishing fleet: data and code for analysis and visualisation

description: Data and code for analysis accompanying the paper "Spatial restrictions inadvertently doubled the carbon footprint of Norway's mackerel fishing fleet", Scherrer et al. (2024) Marine Policy. https://doi.org/10.1016/j.marpol.2024.106014.

Created by Kim Scherrer and Tom Langbehn.