cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10869448
title: Cage enrichment and mouse behaviour

description: Data for: Wolfer, D. P., Litvin, O., Morf, S., Nitsch, R. M., Lipp, H. P., & Würbel, H. (2004). Cage enrichment and mouse behaviour. Nature, 432(7019), 821-822.

Data are presented as xls file. The first sheet contains variable definitions, the second sheet the readouts from three tests. The tests are described in detail in the publication and the electronic supplementary material.
DOI: 10.5281/zenodo.10869449
title: Cage enrichment and mouse behaviour

description: Data for: Wolfer, D. P., Litvin, O., Morf, S., Nitsch, R. M., Lipp, H. P., & Würbel, H. (2004). Cage enrichment and mouse behaviour. Nature, 432(7019), 821-822.

Data are presented as xls file. The first sheet contains variable definitions, the second sheet the readouts from three tests. The tests are described in detail in the publication and the electronic supplementary material.
DOI: 10.34740/kaggle/dsv/7938908
title: GM Chess Games on Chess.com
DOI: 10.5281/zenodo.10869487
title: The 5' targeting vector/donor DNA

description: Sequence of 5' iCre double cut donor DNA plasmid, which was used to generate PTF1a gene edited porcine single cell clones.
DOI: 10.5281/zenodo.10869488
title: The 5' targeting vector/donor DNA

description: Sequence of 5' iCre double cut donor DNA plasmid, which was used to generate PTF1a gene edited porcine single cell clones.
DOI: 10.5281/zenodo.10869552
title: Mesh biaxial specimen with random elasticity field - coarse

description: Mesh biaxial specimen with random elasticity field - coarse
DOI: 10.5281/zenodo.7154243
title: Mesh biaxial specimen with random elasticity field - coarse

description: Mesh biaxial specimen with random elasticity field - coarse
DOI: 10.5281/zenodo.7154244
title: Mesh biaxial specimen with random elasticity field - coarse

description: Mesh biaxial specimen with random elasticity field - coarse
DOI: 10.6084/m9.figshare.25450378.v10
title: SAMMY-seq 4f human tracks data

description: In this repository is stored the hub used to make the genomic track UCSC session to display and share all the tracks shown into "Biochemical properties of chromatin domains define genome compartmentalization" based on the human genome (fibroblasts).
DOI: 10.6084/m9.figshare.25472167
title: R10.4.1 KIT14 Dorado 0.5.3 assemblies

description: Whole genome bacterial assemblies of bacterial pathogens, assembled with either R10.4.1 ONT sequences or Hybrid Illumina-Nanopore assemblies (trycycler or unicyclcer).
DOI: 10.6084/m9.figshare.25470055.v1
title: Binding_sites_Ago2.bed

description: Binding sites of Ago2 in mouse thymocytes from miR-181-eCLIP experiment in Verheyden&Klostermann 2024.
DOI: 10.6084/m9.figshare.25471963
title: Raw RNAseq data - Lemarchand et al 2024

description: Unmapped paired-end sequences from an Illumina HiSeq4000 sequencer were assessed by FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/). Sequence adapters were removed, and reads were quality trimmed using Trimmomatic_0.36. The reads were mapped against the reference mouse genome (mm10) and counts per gene were calculated using annotation from GENCODE M25 (http://www.gencodegenes.org/) using STAR_2.7.2b.
DOI: 10.6084/m9.figshare.25471963.v1
title: Raw RNAseq data - Lemarchand et al 2024

description: Unmapped paired-end sequences from an Illumina HiSeq4000 sequencer were assessed by FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/). Sequence adapters were removed, and reads were quality trimmed using Trimmomatic_0.36. The reads were mapped against the reference mouse genome (mm10) and counts per gene were calculated using annotation from GENCODE M25 (http://www.gencodegenes.org/) using STAR_2.7.2b.
DOI: 10.6084/m9.figshare.25472251
title: 20240326_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25472251.v1
title: 20240326_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.25430/researchdata.cab.unipd.it.00001244
title: Fiber optics passive monitoring of groundwater temperature reveals three-dimensional structures in heterogeneous aquifers: data and codes repository

description: Experimental data and codes for their analysis. Setup and output files of the numerical models. Codes to analyze the results.
DOI: 10.6084/m9.figshare.25472224
title: Research Dataset

description: This data is the Results, analysis of my questionnaire for my master thesis, the questionnaire was regarding the factors affecting cost estimation of commercial projects in Egypt.
DOI: 10.6084/m9.figshare.25472224.v1
title: Research Dataset

description: This data is the Results, analysis of my questionnaire for my master thesis, the questionnaire was regarding the factors affecting cost estimation of commercial projects in Egypt.
DOI: 10.34740/kaggle/dsv/7939341
title: Mahanagar Yatayat Transport Dataset
DOI: 10.5281/zenodo.10867029
title: Dataset and R code used in "Environmental filtering governs consistent vertical zonation in sedimentary microbial communities across disconnected mountain lakes"

description: Dataset and R code used for the manuscript:

Von Eggers, J. M., Wisnoski, N. I., Calder, J. W., Capo, E., Groff, D. V., Krist, A. C., & Shuman, B. (2024). Environmental filtering governs consistent vertical zonation in sedimentary microbial communities across disconnected mountain lakes. Environmental Microbiology, 26(3), e16607.

This dataset and code are also available on GitHub (https://github.com/jvoneggers/WYLakeSedMicrobes).
description: This research was supported by the Microbial Ecology Collaborative with funding from NSF award #EPS-1655726 and the Roy J. Shlemon Quaternary Center.
DOI: 10.5281/zenodo.8349667
title: Dataset and R code used in "Environmental filtering governs consistent vertical zonation in sedimentary microbial communities across disconnected mountain lakes"

description: Dataset and R code used for the manuscript:

Von Eggers, J. M., Wisnoski, N. I., Calder, J. W., Capo, E., Groff, D. V., Krist, A. C., & Shuman, B. (2024). Environmental filtering governs consistent vertical zonation in sedimentary microbial communities across disconnected mountain lakes. Environmental Microbiology, 26(3), e16607.

This dataset and code are also available on GitHub (https://github.com/jvoneggers/WYLakeSedMicrobes).
description: This research was supported by the Microbial Ecology Collaborative with funding from NSF award #EPS-1655726 and the Roy J. Shlemon Quaternary Center.
DOI: 10.5281/zenodo.8349668
title: Dataset and R code used in "Environmental filtering governs consistent vertical zonation in sedimentary microbial communities across disconnected mountain lakes"

description: Dataset and R code used for the manuscript "Environmental filtering governs consistent vertical zonation in sedimentary microbial communities across disconnected mountain lakes" by Jordan Von Eggers, Nathan Wisnoski, John W. Calder, Eric Capo, Dulcinea Groff, Amy Krist, and Bryan Shuman. This dataset and code are also available on GitHub (https://github.com/jvoneggers/WYLakeSedMicrobes).
description: This research was supported by the Microbial Ecology Collaborative with funding from NSF award #EPS-1655726 and the Roy J. Shlemon Quaternary Center.
DOI: 10.6084/m9.figshare.24866310
title: Population exposed to clean water scarcity under (uncertain) climate change and socioeconomic development.

description: Population exposure to clean water scarcity (expressed in billion people, and as a percentage) per geographic region under uncertain climate change and socioeconomic developments.Water scarcity is quantified considering water quantity aspects only (WS) and also including surface water quality (WSq). Assessments are made on the basis of monthly output data of sectoral water demands (domestic, industrial, livestock and irrigation), water availability (e.g. discharge) and water quality (total dissolved solids, biological oxygen demand and fecal coliform) simulated by a coupled global hydrological (<i>PCR-GLOBWB2</i>) and surface water quality (<i>DynQual</i>) model.
DOI: 10.6084/m9.figshare.25472317
title: ADMETopt2-Transformation Rules

description: Transformation Rules for ADMETopt2
DOI: 10.34740/kaggle/dsv/7939400
title: GM Chess Games on Chess.com
DOI: 10.6084/m9.figshare.24715053.v1
title: Beach volume and area

description: This file contains the calculated beach volume and surface area for Kahaloa Beach, Waikīkī, for each survey using the Digital Terrain Model (DTM). The lower boundary is the mean higher high water datum (equivalent to 0.329 m above MSL at Honolulu Tide Gauge; NOAA tides and currents; station ID 1612340), the seaward boundary is the intersection between the DTM and the MHHW datum, and the landward boundary is a fixed line typically determined by structures and walkways. The 2D Area describes the footprint of the dry sand, while the 3D area includes the curvature of the beach face. The two columns 'Volume_low' and 'Volume_high' represent the lower and upper values of volume using a 95 percentile confidence interval the in DTM elevation value multiplied by the 3D surface area.
DOI: 10.6084/m9.figshare.24715062
title: Surveyed shoreline position

description: This folder contains the surveyed shoreline position. There is one .txt file for each survey, named from the data of the survey (YYYYMMDD). The columns contain: 1) PointID, 2) northing, 3) easting, 4) elevation, 5) point_type (TB: top of beachtoe; R: Rock; typically at the alongshore end of the beach). 
Coordinates are in WGS 1984 UTM Zone 4 (EPSG:32604) and elevations are measured with respect to local mean sea level (LMSL) (NOAA tides and currents; station ID 1612340)
DOI: 10.6084/m9.figshare.24715053
title: Beach volume and area

description: This file contains the calculated beach volume and surface area for Kahaloa Beach, Waikīkī, for each survey using the Digital Terrain Model (DTM). The lower boundary is the mean higher high water datum (equivalent to 0.329 m above MSL at Honolulu Tide Gauge; NOAA tides and currents; station ID 1612340), the seaward boundary is the intersection between the DTM and the MHHW datum, and the landward boundary is a fixed line typically determined by structures and walkways. The 2D Area describes the footprint of the dry sand, while the 3D area includes the curvature of the beach face. The two columns 'Volume_low' and 'Volume_high' represent the lower and upper values of volume using a 95 percentile confidence interval the in DTM elevation value multiplied by the 3D surface area.
DOI: 10.6084/m9.figshare.24715056
title: Digital Terrain Model

description: The Digital Terrain Models (DTMs) are derived from photogrammetry from overlapping UAS imagery. This folder contains one DTM per survey. The DTMs have a resolution of 0.5 m, and a vertical uncertainty quantified as the 95% confidence interval around the mean (± 0.0113 m).
Coordinates are in WGS 1984 UTM Zone 4 (EPSG:32604) and elevations are measured with respect to local mean sea level (LMSL) (NOAA tides and currents; station ID 1612340)
DOI: 10.6084/m9.figshare.24715056.v1
title: Digital Terrain Model

description: The Digital Terrain Models (DTMs) are derived from photogrammetry from overlapping UAS imagery. This folder contains one DTM per survey. The DTMs have a resolution of 0.5 m, and a vertical uncertainty quantified as the 95% confidence interval around the mean (± 0.0113 m).
Coordinates are in WGS 1984 UTM Zone 4 (EPSG:32604) and elevations are measured with respect to local mean sea level (LMSL) (NOAA tides and currents; station ID 1612340)
DOI: 10.6084/m9.figshare.24715059
title: Image orthomosaic

description: The orthomosaics are produced from overlapping UAS imagery (80% side/front overlap) with photogrammetic processing to create a mosaic without distortion. This folder contains a .tif image from each survey named by the surveyday (YYYYMMDD_mosaic.tif). The resolution varies slightly between surveys and is 3-4 cm. 
Coordinates are in WGS 1984 UTM Zone 4 (EPSG:32604)
DOI: 10.6084/m9.figshare.24715059.v1
title: Image orthomosaic

description: The orthomosaics are produced from overlapping UAS imagery (80% side/front overlap) with photogrammetic processing to create a mosaic without distortion. This folder contains a .tif image from each survey named by the surveyday (YYYYMMDD_mosaic.tif). The resolution varies slightly between surveys and is 3-4 cm. 
Coordinates are in WGS 1984 UTM Zone 4 (EPSG:32604)
DOI: 10.6084/m9.figshare.25366456
title: Shoreline vectors for MSL, MHHW, and LWM

description: This folder includes three shoreline vectors for each survey: 1) at Mean Sea Level (MSL) and 2) at Mean Higher High Water (0.329 m above MSL), both derived as contours from the Digital Terrain Model. These contours underwent a review process for necessary adjustments, such as merging line segments or removing erroneous lines or points. The third contour 3) represents the surveyed shoreline position at the top of the beach toe, typically corresponding to Mean Lower Low Water (-0.251 m relative to MSL). The name formatting for these contours are YYYYMMDD_datum.geojson, and each contain two attribute; the contour elevation and the survey date.
DOI: 10.6084/m9.figshare.25366477
title: Image mosaic sample from March 14, 2019

description: For users considering using a image mosaic for overlay without downloading all 30 GB of image mosaics. The orthomosaics are produced from overlapping UAS imagery (80% side/front overlap) with photogrammetic processing to create a mosaic without distortion. It is provided in .Tif format with a resolution around 3-4 cm. Coordinates are in WGS 1984 UTM Zone 4 (EPSG:32604)
DOI: 10.6084/m9.figshare.25366477.v1
title: Image mosaic sample from March 14, 2019

description: For users considering using a image mosaic for overlay without downloading all 30 GB of image mosaics. The orthomosaics are produced from overlapping UAS imagery (80% side/front overlap) with photogrammetic processing to create a mosaic without distortion. It is provided in .Tif format with a resolution around 3-4 cm. Coordinates are in WGS 1984 UTM Zone 4 (EPSG:32604)
DOI: 10.6084/m9.figshare.24715062.v1
title: Surveyed shoreline position

description: This folder contains the surveyed shoreline position. There is one .txt file for each survey, named from the data of the survey (YYYYMMDD). The columns contain: 1) PointID, 2) northing, 3) easting, 4) elevation, 5) point_type (TB: top of beachtoe; R: Rock; typically at the alongshore end of the beach). 
Coordinates are in WGS 1984 UTM Zone 4 (EPSG:32604) and elevations are measured with respect to local mean sea level (LMSL) (NOAA tides and currents; station ID 1612340)
DOI: 10.6084/m9.figshare.25366456.v1
title: Shoreline vectors for MSL, MHHW, and LWM

description: This folder includes three shoreline vectors for each survey: 1) at Mean Sea Level (MSL) and 2) at Mean Higher High Water (0.329 m above MSL), both derived as contours from the Digital Terrain Model. These contours underwent a review process for necessary adjustments, such as merging line segments or removing erroneous lines or points. The third contour 3) represents the surveyed shoreline position at the top of the beach toe, typically corresponding to Mean Lower Low Water (-0.251 m relative to MSL). The name formatting for these contours are YYYYMMDD_datum.geojson, and each contain two attribute; the contour elevation and the survey date.
DOI: 10.6084/m9.figshare.25472020
title: <b>Potential applicability of SPLAT® Verb for management of European spruce bark beetle, </b><b><i>Ips typographus </i></b><b>(L.)</b>

description: These datasets belong to a series of experiments on the anti-aggregation effect of verbenone on <i>Ips typographus. </i>
DOI: 10.6084/m9.figshare.25472020.v1
title: <b>Potential applicability of SPLAT® Verb for management of European spruce bark beetle, </b><b><i>Ips typographus </i></b><b>(L.)</b>

description: These datasets belong to a series of experiments on the anti-aggregation effect of verbenone on <i>Ips typographus. </i>
DOI: 10.34740/kaggle/dsv/7939271
title: World Air Quality Data 2024 (Updated)
DOI: 10.34740/kaggle/ds/4667303
title: GM Chess Games on Chess.com
DOI: 10.5281/zenodo.10869690
title: The 3' targeting vector/donor DNA

description: Sequence of 3' iCre double cut donor DNA plasmid, which was used to generate PTF1a (3' end) gene edited porcine single cell clones.
DOI: 10.5281/zenodo.10869691
title: The 3' targeting vector/donor DNA

description: Sequence of 3' iCre double cut donor DNA plasmid, which was used to generate PTF1a (3' end) gene edited porcine single cell clones.
DOI: 10.6084/m9.figshare.25032113
title: SISSO files

description: Specific structural motifs in inorganic solids are often related to target physical properties. For many classes of solids, such as Zintl phases and polar intermetallics, the crystal structures are diverse and not easy to predict. Various antimonides that are potential thermoelectric materials were proposed to be synthesizable based on their estimated formation energies. Their structures were broadly classified as clathrate, channel, layered, or network through a machine learning model trained on existing ternary phases and features based on elemental properties using the sure independence screening and sparsifying operator algorithm.
DOI: 10.6084/m9.figshare.24787458
title: <b>Single cell lineage tracing reveals clonal dynamics of anti-EGFR therapy resistance in triple negative breast cancer.</b>

description: Seurat object of scRNA-seq data and associated metadata
DOI: 10.5281/zenodo.10866126
title: Outer Port of Punta Langosteira (Spain) ship movement dataset: 2021 - 2022

description: This dataset contains the movements of 21 ships recorded in the Outer Port of Punta Langosteira (A Coruña, Spain) from 2021 until 2022.
DOI: 10.6084/m9.figshare.25472341
title: Model Checkpoints

description: The checkpoints of generation model and similarity model.
DOI: 10.5281/zenodo.10868137
title: MGP-dataset

description: MGP (Monochrome Geometric Pattern)

Set of 4x4 pixel images or patterns with black and white pixels,

reassembling very coarse geometric shapes of rectangles, triangles

and disjoined pixel shapes for image classification.
DOI: 10.5281/zenodo.10868138
title: MGP-dataset

description: MGP (Monochrome Geometric Pattern)

Set of 4x4 pixel images or patterns with black and white pixels,

reassembling very coarse geometric shapes of rectangles, triangles

and disjoined pixel shapes for image classification.
DOI: 10.5281/zenodo.7970409
title: Daily weather data from Nizanda, Mexico (2006-2024)

description: Daily weather data from Nizanda, Oaxaca, Mexico. Weather data are available on a daily basis as minimum time resolution; however, data are available mostly at an hourly time resolution.

Weather data comprise precipitation, air temperature, wind speed and direction, air humidity, atmospheric pressure, and other derived climatic variables.

For further information about this dataset, contact Jorge A. Meave (jorge.meave@ciencias.unam.mx) and/or Rodrigo Muñoz (rod.munozaviles@gmail.com).

The weather station is located at the following geographical coordinates: 16.661000º N, 95.007484º W

Weather data were recorded with a Davis Instruments Vantage Pro2 weather station/sensor suite. Data prior to year 2020 was recorded locally in a Davis Vantage Pro2 console (data segments 1-3), while data after 2020 was recorded online on the cloud using a Davis Vantage Connect cellular transmitter together with the WeatherLink.com service (data segment 4).
description: Funding for the installation and maintenance of the weather stations originating this dataset was provided by:
Universidad Nacional Autónoma de México, Dirección General de Asuntos del Personal Académico (DGAPA), grant PAPIIT IN217620
Dutch Research Council (Nederlandse Organisatie voor Wetenschappelijk Onderzoek, NWO), grant ALWOP.457
DOI: 10.6084/m9.figshare.25450378
title: SAMMY-seq 4f human tracks data

description: In this repository is stored the hub used to make the genomic track UCSC session to display and share all the tracks shown into "Biochemical properties of chromatin domains define genome compartmentalization" based on the human genome (fibroblasts).
DOI: 10.6084/m9.figshare.25450378.v11
title: SAMMY-seq 4f human tracks data

description: In this repository is stored the hub used to make the genomic track UCSC session to display and share all the tracks shown into "Biochemical properties of chromatin domains define genome compartmentalization" based on the human genome (fibroblasts).
DOI: 10.6084/m9.figshare.25450378.v12
title: SAMMY-seq 4f human tracks data

description: In this repository is stored the hub used to make the genomic track UCSC session to display and share all the tracks shown into "Biochemical properties of chromatin domains define genome compartmentalization" based on the human genome (fibroblasts).
DOI: 10.6084/m9.figshare.25472383
title: Thermochronological data

description: Table S2 apatite and zircon U-Th/He data.
DOI: 10.6084/m9.figshare.25466188.v1
title: Solar Proxy Imputation

description: Contains Python code for using Vandermond with Arnoldi and Generalized Additive Models to reconstruct the F10.7 solar index across gaps of various length.
DOI: 10.6084/m9.figshare.25469998.v1
title: chimeric_crosslinks_Ago2IP_plus.bed

description: Chimeric crosslinks of Ago2 in mouse thymocytes, from miR181-eCLIP experiment in Verheyden & Klostermann et al 2024. Merge of all 3 replicates, crosslinks from plus strand.
DOI: 10.6084/m9.figshare.25469908.v1
title: chimeric_crosslinks_miR181enr_miR181a/b-1-KO_minus.bed

description: Chimeric crosslinks of Ago2 with enrichment for miR181 in mouse thymocytes, from miR181-eCLIP experiment in Verheyden & Klostermann et al 2024. Knockout of miR181a/b-1, merge of all 3 replicates, crosslinks from minus strand.
DOI: 10.57782/ltdkvu/y5erjt
title: SPLINTER_tr2_main_theta_001.z01
DOI: 10.57782/ltdkvu/2cjhlq
title: tr2_main_theta_001.z01
DOI: 10.57782/ltdkvu/mggk05
title: SPLINTER_tr2_main_theta_001.zip
DOI: 10.57782/ltdkvu/ksdp9t
title: tr2_main_theta_001.z02
DOI: 10.57782/ltdkvu/e5b2dw
title: tr2_main_theta_001.z03
DOI: 10.57782/ltdkvu/8dwhpt
title: tr2_main_theta_001.z04
DOI: 10.57782/ltdkvu/evdner
title: tr2_main_theta_001.z05
DOI: 10.57782/ltdkvu/4sw6ui
title: tr2_main_theta_001.z06
DOI: 10.57782/ltdkvu/vvpsuq
title: tr2_main_theta_001.z07
DOI: 10.57782/ltdkvu/65mybh
title: tr2_main_theta_001.z08

description: :unav
DOI: 10.57782/ltdkvu/gcvcsr
title: tr2_main_theta_001.z09

description: :unav
DOI: 10.57782/ltdkvu/vrgsxa
title: tr2_main_theta_001.z10

description: :unav
DOI: 10.57782/ltdkvu/95ruh3
title: tr2_main_theta_001.z11

description: :unav
DOI: 10.57782/ltdkvu/2jtcjo
title: tr2_main_theta_001.z12

description: :unav
DOI: 10.57782/ltdkvu/8m9tcu
title: tr2_main_theta_001.zip

description: :unav
DOI: 10.57782/ltdkvu/tx5gkc
title: tr2_main_theta_001.z13

description: :unav
DOI: 10.57782/ltdkvu
title: Dataset belonging to the paper: LES-based validation of a dynamic wind farm flow model under unsteady inflow and yaw misalignment

description: Dataset belonging to the paper: LES-based validation of a dynamic wind farm flow model under unsteady inflow and yaw misalignment. Provided are parts of the Large-Eddy-Simulation (LES) results (in netCDF format) and corresponding results computed with the flow model SPLINTER (in Numpy format). Naming for LES results: tr2_main_theta_001 is the first run of the ensemble of 10 runs. Naming for SPLINTER results: SPLINTER_tr2_main_theta_001 is the first run of the ensemble of 10 runs. Compressed zip files were split into blocks. See "Notes" below for download information. LES were conducted with the PALM Model System (https://gitlab.palm-model.org/releases/palm_model_system/-/releases/v22.10). SPLINTER flow model was developed at Carl von Ossietzky Universität Oldenburg. Information are provided in Rott et al. Phys.: Conf. Ser. 854(1) 012039 and in the paper which the dataset belongs to and references therein.
DOI: 10.5281/zenodo.4224718
title: Simulation data

description: Simulation data