cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.mn03c/1
title: ITS sequence alignment

description: An alignment of ITS sequences that were used to create a neighbor-joining tree for Figure 1
DOI: 10.5061/dryad.mn03c/2
title: COI-5P sequence alignment

description: An alignment of COI-5P sequences that were used to create a neighbor-joining tree for Figure 1
DOI: 10.5061/dryad.mn03c/3
title: rbcL sequence alignment

description: An alignment of rbcL sequences that were used to create a neighbor-joining tree for Figure 3
DOI: 10.5061/dryad.mn03c/4
title: Figure 3 rbcL tree

description: A neighbor-joining tree generated from rbcL sequence data
DOI: 10.5061/dryad.mn03c/5
title: Figure 1 COI-5P tree

description: A neighbor-joining tree generated from COI-5P sequence data
DOI: 10.5061/dryad.mn03c/6
title: Figure 1 ITS tree

description: A neighbor-joining tree generated from ITS sequence data
DOI: 10.5061/dryad.ns11g/1
title: Nest Data (Male Stickleback and Eggs)

description: Data for male stickleback size and isotope values, as well as nest site and habitat, and egg isotope values, from 16 lakes in British Columbia.
DOI: 10.5061/dryad.ns11g/2
title: Female Stickleback and Egg Data

description: Female stickleback isotopes and egg isotopes from three lakes in British Columbia.
DOI: 10.5061/dryad.ns11g/3
title: Lake Data

description: Lake-level properties used as potential predictors of assortative mating in 16 lakes in British Columbia.
DOI: 10.5061/dryad.ns11g/4
title: R script for analyses and figures

description: R script including code needed to reproduce all key analyses in the paper, and to reproduce the figures. Comments included where explanation is necessary.
DOI: 10.5061/dryad.q5rs8/1
title: Pathogen Survey Data

description: Please see read file for data file descriptor.
DOI: 10.5061/dryad.q5v77/1
title: EcoDataAll

description: This file contains mean morphometric variables for each population as well as mean female standard length and ecological variables.
DOI: 10.5061/dryad.q5v77/2
title: RelativeWarpsAnalysis

description: Relative Warp Analysis data. Includes RW 1-10 and centroid size.
DOI: 10.5061/dryad.q6h1j/1
title: Data_SchweigerAndBeierkuhnlein2015_CarabidColouration

description: Data of species colouration, morphological, ecological, distributional and bioclimatic traits used for the analyses. References to other data sources are given in the data-file.
DOI: 10.5061/dryad.qh631/5
title: MuirheadPresgraves_FigA5_A6_Nr

description: Simulation results, Appendix figures A5, A6 (range of s values when Nr is large, Nr is small)
DOI: 10.5061/dryad.qh631/6
title: MuirheadPresgraves_FigA7_resid

description: Simulation results, Figure A7 (residuals under standard parameter values)
DOI: 10.5061/dryad.qh631/7
title: MuirheadPresgraves_FigA8_10_popSize

description: Simulation results, Appendix figures A8, A10 (residuals under various population sizes)
DOI: 10.5061/dryad.qh631/8
title: MuirheadPresgraves_FigA9_10_mig

description: Simulation results, Appendix figures A9, A10 (residuals under different migration levels)
DOI: 10.5061/dryad.qv565/1
title: Acoustic Parameters, Body Mass, Bill Length, and Vegetation Index of 51 sp from the Arini Tribe

description: This spreadsheet includes the data on acoustic parameters, body mass, bill length, and vegetation index of the 51 species from the Arini Tribe included in our study.
DOI: 10.5061/dryad.qv565/2
title: Distribution overlap Arini 51 sp

description: This spreadsheet contains: 1) The range of each of the 51 species from the Arini tribe included in our study, and 2) The degree of overlap of distribution ranges for all possible pairs of species.
DOI: 10.5061/dryad.s46kt/2
title: AMPS_Pilot_MRI data
DOI: 10.5061/dryad.td1g2/2
title: Ord_TJ-BEHECO-2015-0352R2_HBduration

description: Data on the duration of headbob display bouts for 14 adult male Anolis gundlachi
DOI: 10.5061/dryad.td1g2/3
title: Ord_TJ-BEHECO-2015-0352R2_PSynch

description: Data on PSynch (relation of headbob bouts to dewlap extensions) for 14 adult male Anolis gundlachi
DOI: 10.5061/dryad.td1g2/4
title: Ord_TJ-BEHECO-2015-0352R2_PlasticityPredictors

description: Data on the absolute plasticity estimated for the duration of headbob display bouts in response to fluctuations in habitat light for 14 adult male Anolis gundlachi
DOI: 10.5061/dryad.v6p3h/1
title: Campanuloideae_Roucela_atpB_matK_petD_rbcL_Spacer_AT11_AT70

description: FASTA alignment file of all Campanuloideae taxa (including Roucela species) included in the study.  Alignment contains atpB, matK, petD, rbcL, atpB-rbcL spacer region, AT11, and AT70 sequences.
DOI: 10.5061/dryad.1mr07/1
title: Geometric morphometric data (males)

description: Data from geometric morphometrics in the form of relative warp values for each fish
DOI: 10.5061/dryad.1mr07/2
title: Univariate measurement data

description: Data from linear measurements and gill raker measurements and counts, for each fish and for both sexes.
DOI: 10.5061/dryad.2p66n/1
title: group.file

description: mothur group file for analysis
DOI: 10.5061/dryad.2p66n/2
title: name.file

description: name file for mothur analysis
DOI: 10.5061/dryad.2p66n/3
title: fasta.file

description: fasta file for mothur analysis
DOI: 10.5061/dryad.2p66n/4
title: 2nd_Microbiome_Project_SlicetoCore

description: Extra Meta data for analysis
DOI: 10.5061/dryad.2p66n/5
title: README

description: Description of uploaded data set.
DOI: 10.5061/dryad.3r651/1
title: Ne500_IdealRawPopulationFiles

description: These are the "true" population files for ideal (isolation) populations of size 500 simulated from Nemo. They contain all individuals and many extra loci, from which these were sampled to obtain the inputs used in analyses (see Program_InputFiles). Temporal samplers used two time points, from which the files here are identified as belonging to generation 0 or generation 1.
DOI: 10.5061/dryad.6324j/2
title: Influence of coral-macroalgal contact on Acanthaster planci feeding behaviour

description: Excel (.xls) spreadsheets detailing results of field surveys and manipulative experiments investigating the influence of coral-macroalgal contact on Acanthaster planci feeding behaviour. Sheet 1 includes data from the field survey conducted during July-August 2013 on Votua Reef, Viti Levu, Fiji. Column A indicates individual Acanthaster feeding incidents on the coral Montopira hispida. These include the coral that was attacked (Primary) and 5 nearest-neighboring Montipora colonies (Secondary), which are indicated in column B. The percent of each colony covered in macroalgae or attacked by Acanthaster are included in columns D and E, respectively.  Sheet 2 includes data from feeding choice experiments conducted during July-August 2012. Individual starfish were given a choice between Montipora surrounded by Sargassum polycystum or plastic Sargassum mimics of varying frond densities and lengths vs. Montipora that lacked Sargassum or Sargassum mimics. Column F indicates the 1st coral attacked (0 = lacked Sargassum/mimics, 1 = surrounded by Sargassum/mimics). Sheet 3 includes data from feeding choice experiments conducted during June 2013. Individual starfish were offered a choice between either Montipora hispida or Porites cylindrica that both lacked surrounding Sargassum (0, column B), or where the choice was between Montipora surrounded by Sargassum or Porites that lacked surrounding Sargassum (1, column B).
DOI: 10.5061/dryad.68s40.1
title: Data from: Multilocus species delimitation in a complex of morphologically conserved trapdoor spiders (Mygalomorphae, Antrodiaetidae, Aliatypus)
DOI: 10.5061/dryad.68s40.2/3.2
title: Supplemental Figure Legends

description: Supplemental figure legends
DOI: 10.5061/dryad.760r5/1
title: Senegal data

description: Data collected from PZQ efficacy study in two Senegalese villages co-endemic for S. haematobium and S. mansoni. Key to variable names is included in second sheet.
DOI: 10.5061/dryad.760r5/2
title: Niger data

description: Data collected from PZQ efficacy study in two Nigerien villages co-endemic for S. haematobium and S. mansoni. Key to variable names is included in second sheet.
DOI: 10.5061/dryad.760r5/3
title: Mali data

description: Data collected from 33 sentinel sites for monitoring the schistosomiasis control programme in Mali. Full data from baseline and two years of follow-up is included, though our analyses often focuses on data subsets (e.g. co-endemic schools / children with full-follow-up), as described in the paper. Key to variable names is included in the second sheet.
DOI: 10.5061/dryad.8hj8t/1
title: DFA_data

description: This zip file contains the phytoplankton and covariate data for conducting the dynamic factor analyses (DFA).
DOI: 10.5061/dryad.8hj8t/2
title: MARSS_data

description: This file contains the phytoplankton and covariate data for conducting the species interaction analyses using the MARSS framework.
DOI: 10.5061/dryad.b4h75/1
title: Data at the county level

description: The origin of the different variables is given in the article. The column headings refer to the variable names used in the article. The predator density is given per 1000 km2 and the roe deer density as the number of animal shot per 10 km2.
DOI: 10.5061/dryad.b4h75/2
title: Data at the municipality level

description: The origin of the different variables is given in the article. The column headings refer to the variable names used in the article. See legends in tables 2, 3 and 4 for details on the units used.
DOI: 10.5061/dryad.bf771/3
title: mortality_Caribou

description: Data used to analyse the probability of mortality of 145 radio-collar caribou as a function of their distance from the nearest road of cut.
DOI: 10.5061/dryad.c8fb1/1
title: Multidimensional scaling data

description: Data used for cluster,non metric multidimensional scaling and mantel test correlation analysis testing for an association between visitor community and floral phenotype.
DOI: 10.5061/dryad.c8fb1/2
title: Univariate regression data

description: Data used for univariate regression analysis, testing for a relationship between style length and functional visitor length.
DOI: 10.5061/dryad.c8fb1/3
title: Nested ANOVA: floral traits

description: Data used in nested ANOVA analysis testing for differences in floral traits between long and short style phenotypes
DOI: 10.5061/dryad.c8fb1/4
title: Reciprocal translocation data

description: Data from reciprocal translocation experiments testing for local adaptation in long and short style phenotypes of Nerine humilis.
DOI: 10.5061/dryad.c8fb1/5
title: Visitor preference data

description: Data from choice experiments conducted during reciprocal translocations. This data was used to test whether local adaptation is a consequence of the sensorial fit between flowers and visitors.
DOI: 10.5061/dryad.c8fb1/6
title: Single visitations: contact

description: Contact data from single visitations used to test whether local adaptation is a consequence of the mechanical fit between flower and visitor morphology.
DOI: 10.5061/dryad.d1t81/1
title: Nestling development & Immunity
DOI: 10.5061/dryad.h75fp2q8.2
title: Data from: Parallel allochronic divergence in a winter moth due to disruption of reproductive period by winter harshness
DOI: 10.5061/dryad.h75fp2q8.2/1.2
title: AFLP_data_for_AFLP_SURV

description: AFLP data of Inurois punctigera
DOI: 10.5061/dryad.h75fp2q8.2/2.2
title: correspondence_AFLPdata_to_COI

description: Shows the COI haplotypes (GenBank accession number) of individuals using in AFLP data analysis.
DOI: 10.5061/dryad.h95t0/1
title: MatrixComparisonDataset

description: The final data file used for the matrix comparison analyses described in the manuscript.  This file includes relevant metadata for each matrix comparison, the reference that it came from, and all the matrix comparison statistics. A second tab in this Excel workbook ("Key to column names") describes what the values in each column represent.
DOI: 10.5061/dryad.h95t0/2
title: G-matrices

description: All G-matrices used in the analyses.  There are two matrices for each comparison, with the naming convention STUDYNAME_E# for between-environment comparisons) or STUDYNAME_P# (for between-population comparisons)
DOI: 10.5061/dryad.h95t0/3
title: MatrixComparisonAnalysis

description: This R script was used to calculate matrix comparison metrics from G-matrices contained in .csv files, performs the analyses described in the manuscript, and creates the figures presented in the manuscript.  It relies on metadata contained in the file "Metadata_forRscript.csv" and the list of comparisons in the file "matrixList_forRscript.csv".
DOI: 10.5061/dryad.h95t0/4
title: matrixList_forRscript

description: List of matrices to compare that is used in the "MatrixComparisonAnalysis.R" R script.
DOI: 10.5061/dryad.h95t0/5
title: Metadata_forRscript

description: Metadata file that is used in the "MatrixComparisonAnalysis.R" R script.
DOI: 10.5061/dryad.hb4ht.2
title: Data from: Life-history trait database of European reptile species
DOI: 10.5061/dryad.jh3bq/1
title: Dataset on which the SEM analyses were conducted

description: Annual crop cover represents arcsine-square-root-transformed proportional cover within 500 m radius of each sampled field, floral provision = 0 are control fields, and floral provision = 1 are fields provided with a flowering strip of buckwheat, the interaction between annual crop cover and floral provision is calculated on normalized values, nitrogen content is percentage dry weight, crop yield is kg dry weight / m2, aphid and Plutella xylostella abundance are log(x+0.01)-transformed number of individuals per plant, and aphid and Plutella xylostella parasitism rates are arcsine-square-root transformed proportions.
DOI: 10.5061/dryad.jv7n7/1
title: Experimental data

description: Experimental invasion dynamics recorded from gen0 (date of introduction) to gen9 (nine generations later). The experimental design includes the strain of Trichogramma chilonis used (T or R), the initial population size (propagule : high or low) and the connectivity level (high or low).
DOI: 10.5061/dryad.jv7n7/2
title: R simulation script

description: Script (in R language) used to perform the simulations described in the article.
DOI: 10.5061/dryad.k1m1g.2
title: Data from: Population genetic structure and approximate Bayesian computation analyses reveal the southern origin and northward dispersal of the oriental fruit moth Grapholita molesta (Lepidoptera: Tortricidae) in its native range
DOI: 10.5061/dryad.k1m1g.2/17.2
title: Microsatellite_Grapholita_molesta_8loci_14pops

description: Eight microsatellite loci from the 14 Grapholita molesta populations
DOI: 10.5061/dryad.k1m1g.2/18.2
title: Sequences of mitochondrial genes from each individual of the Grapholita molesta

description: The sequences of the mitochondrial genes cox1, cox2, atp8, atp6, nad5, nad1 and lrna and the combination of the seven genes from the 754 individuals of Grapholita molesta.
DOI: 10.5061/dryad.k89b2ps8.1
title: Data from: Jack of all nectars, master of most: DNA methylation and the epigenetic basis of niche width in a flower-living yeast
DOI: 10.5061/dryad.k89b2ps8.2
title: Data from: Jack of all nectars, master of most: DNA methylation and the epigenetic basis of niche width in a flower-living yeast
DOI: 10.5061/dryad.k89b2ps8.2/1.2
title: Metschnikowia reukaufii MSAP fingerprints

description: Methylation sensitive amplified polymorphism (MSAP)fingerprints of the Metschnikowia reukaufii strains used in this study obtained under control and experimental conditions in media differing in sugar composition and concentration.
DOI: 10.5061/dryad.k89b2ps8.2/2.2
title: Metschnikowia reukaufii growth experiments

description: Raw results of the Metschnikowia reukaufii growth experiments, involving replica-plating the five strains in experimental media with and without 5-Azacytidine, and differing also in sugar composition (sucrose, glucose or fructose) and sugar concentration (20%, 30%, 40% or 50%). Colony growth was scored on an ordinal scale from 0 (no growth) to 4 (maximum growth, thickest and broadest colony) on days 2, 7, 12 and 17 after plating.
DOI: 10.5061/dryad.p0p92/1
title: Specimen data for Australian Teal

description: Specimen information for 23 Chestnut teal (Anas castanea) and 48 grey teal (Anas gracilis), including specimen number, DNA number, sex, and collection locality.
DOI: 10.5061/dryad.p0p92/2
title: Phased FASTA files

description: FASTA files for phased alleles from 7 Z-chromosome introns and 17 autosomal introns sequenced from chestnut teal and grey teal.
DOI: 10.5061/dryad.p0p92/3
title: Concatenated NEXUS files

description: NEXUS files of concatenated DNA sequences for 7 Z-chromosome loci (69 individuals; 2637 bp) and 17 autosomal loci (71 individuals; 5351 bp). Each individual is represented by a single consensus sequence with polymorphic positions coded by IUPAC ambiguity codes. Missing data are coded as "?".
DOI: 10.5061/dryad.p0p92/4
title: IMa2 input files

description: IMa2 input files for 7 Z-chromosome loci and 17 autosomal loci. Sequences are partitioned into two populations "CT" for chestnut teal and "GT" for grey teal. Sequences have been filtered to be consistent with no recombination.
DOI: 10.5061/dryad.p56q7/1
title: number of wins by study quarter

description: File contains the number of aggressive wins for parakeets in two study groups across four study quarters.
DOI: 10.5061/dryad.q1r40/1
title: PaternityDryad

description: File is in the GENEPOP format. Data is microsatellite genotypes from one female, the last male to be mated with her, and up to 24 of her offspring. VGB = Virgin Gorda Baths; VGP = Virgin Gorda Peak; LAB = lab population sourced from Virgin Gorda Baths; LMMale=last mated male. Missing data is represented by "?".
DOI: 10.5061/dryad.q2kg1/1
title: Suppl Material 1 Azer: Characteristics of Wikipedia cardiovascular topics, DISCERN scores and readability scores.

description: This document shows the characteristics of the Wikipedia cardiovascular topics included in the study, the DISCERN scores obtained from three evaluators and the readability scores.
DOI: 10.5061/dryad.q5v77/3
title: F1 RWA

description: Common garden RWA
DOI: 10.5061/dryad.r3761/1
title: Irish female badgers - pregnancy data

description: weight and length of female badgers, along with month of capture and pregnancy information: no. 2ry follicles, no. 3ry follicles, no. and size of blastocysts, no. foetuses, no. corpora lutea, progesterone level
DOI: 10.5061/dryad.s6h6b/1
title: Kim et al_data

description: 1. Repeated measures data; 2. Individual-based data
DOI: 10.5061/dryad.tn32c/1
title: Preferred body temperatures

description: Preferred body temperatures of two newt species measured in laboratory thermal gradient.
DOI: 10.5061/dryad.tn32c/2
title: Thermoregulatory indices

description: Operative temperatures, body temperatures, and thermoregulatory indices of two newt species measured in seminatural settings.
DOI: 10.5061/dryad.v1v13/1
title: Myotis cytb parsimony tree

description: Parsimony tree used to create Myotis lucifugus haplotype network, including outgroups and other Myotis lucifugus sequences downloaded from GenBank. See Key to cytb haplotypes for identification of individual sequences belonging to each haplotype.
DOI: 10.5061/dryad.18796/1
title: Raw floral trait data from the 16 common garden populations

description: This MS excel file contains raw floral trait data for red ecotype, yellow ecotype and hybrid populations (Column A) of Mimulus aurantiacus raised in a common garden at the University of Oregon. Seeds were collected from 16 populations (column B) in the field and raised in a greenhouse. Each maternal line (column C) is represented by 2 seedlings (column D). We then measured 11 traits from 2 flowers per plant (columns E - Z). All measurements are in mm, except for anthocyanin which is the absorbance at 520 nm.
DOI: 10.5061/dryad.18796/2
title: Floral trait data used in the correlation and Principal Components analyses

description: This file contains phenotypic data for six floral traits (columns B to G) for 4 groups of plants (red ecotype (population UCSD), yellow ecotype (population LO), F1 (red x yellow) and F2 (F1 x F1) grown in a common environment at the university of Oregon. All measurements are in mm, except for anthocyanin which is the absorbance at 520 nm.
DOI: 10.5061/dryad.21rt0fp0.1
title: Data from: A genetic discontinuity in root-nodulating bacteria of cultivated pea in the Indian trans-Himalayas
DOI: 10.5061/dryad.21rt0fp0.2
title: Data from: A genetic discontinuity in root-nodulating bacteria of cultivated pea in the Indian trans-Himalayas
DOI: 10.5061/dryad.21rt0fp0.2/3.2
title: Carbon source utilization pattern of pea root-nodulating bacteria
DOI: 10.5061/dryad.21rt0fp0.2/4.2
title: whole-cell fatty acid composition of pea root-nodulating bacteria

description: Whole-cell fatty acids of the isolates were extracted and derivatized to methyl esters employing Instant FAME Kit and analysed on gas chromatograph equipped with FID detector.
DOI: 10.5061/dryad.21rt0fp0.2/5.2
title: Genbank accession links

description: Genbank accession links
DOI: 10.5061/dryad.29j8d/2
title: Appendix2

description: Species lists of Early tetrapods, by major subclade, and by time.
DOI: 10.5061/dryad.29j8d/3
title: Appendix3

description: Species list of dinosaurs, from 1824-2011
DOI: 10.5061/dryad.29j8d/4
title: Appendix4

description: Species lists of Early tetrapods and of Dinosaurs, sorted by geological period, by old lands vs. new lands, and in other ways.
DOI: 10.5061/dryad.29j8d/5
title: Appendix1

description: Summary data for the Early tetrapods and Dinosaurs studies, together with calculations and live versions of Figures 1-10.
DOI: 10.5061/dryad.3r651/10
title: CoNe_IBD50_OutputFiles

description: CoNe Ne estimation output files for IBD scenarios with true Ne = 50. See the same readme for other input/output files for naming conventions.
DOI: 10.5061/dryad.3r651/11
title: CoNe_IBD500_OutputFiles

description: CoNe Ne estimation output files for IBD scenarios with true Ne = 500. See the same readme for other input/output files for naming conventions.
DOI: 10.5061/dryad.3r651/2
title: Ne5000_IdealRawPopulationFiles

description: These are the "true" population files for ideal (isolation) populations of size 5000 simulated from Nemo. They contain all individuals and many extra loci, from which these were sampled to obtain the inputs used in analyses (see Program_InputFiles). Temporal samplers used two time points, from which the files here are identified as belonging to generation 0 or generation 1.
DOI: 10.5061/dryad.3r651/3
title: Ne50_Generation0_IdealRawPopulationFiles

description: These are the "true" population files for ideal (isolation) populations of size 50 simulated from Nemo. They contain all individuals and many extra loci, from which these were sampled to obtain the inputs used in analyses (see Program_InputFiles). Temporal samplers used two time points, from which the files here are identified as belonging to generation 0 or generation 1.
DOI: 10.5061/dryad.3r651/4
title: Ne50_Generation1_IdealRawPopulationFiles

description: These are the "true" population files for ideal (isolation) populations of size 50 simulated from Nemo. They contain all individuals and many extra loci, from which these were sampled to obtain the inputs used in analyses (see Program_InputFiles). Temporal samplers used two time points, from which the files here are identified as belonging to generation 0 or generation 1.
DOI: 10.5061/dryad.3r651/5
title: EstimationPrograms_FormattedInputFiles

description: See the ReadMe for further details. These are the input files formatted for each analysis program and are the population samples under analysis.
DOI: 10.5061/dryad.3r651/6
title: ProgramOutputFilesFor_Colony_Estim_MLNe_NeEstimator_ONeSamp_TMVP

description: These are the Ne estimates output by the various programs. See the readme for file naming conventions. Because of their large size, CoNe output files are stored separately.
DOI: 10.5061/dryad.3r651/7
title: CoNe_Ideal_OutputFiles

description: These are outputs for Cone Ideal (isolation) population cases. See the Readme for file naming conventions.