cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zspsg4
title: Occurrence Download

description: A dataset containing 11217 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Podocarpus costalis C.Presl",
 "TaxonKey is Shorea ovata Dyer ex Brandis",
 "TaxonKey is Eretmochelys imbricata (Linnaeus, 1766)",
 "TaxonKey is Tectona philippensis Benth. & Hook.f.",
 "TaxonKey is Shorea astylosa Foxw.",
 "TaxonKey is Dipterocarpus alatus A.DC."
 ]
}

 The dataset includes 11217 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008488-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etgvwr
title: Occurrence Download

description: A dataset containing 42854 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Australia",
 "Country is New Zealand"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pomaderris Labill."
 ]
}

 The dataset includes 42854 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0260059-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpzv43
title: Occurrence Download

description: A dataset containing 1195 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Cryptobiont assemblages's dataset of coral reefs using ARMS in B10 Reef and Mahahual Reef of the Great Caribbean"
 ]
}

 The dataset includes 1195 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043837-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9ukvu
title: Occurrence Download

description: A dataset containing 35154 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scomber scombrus Linnaeus, 1758"
 ]
}

 The dataset includes 35154 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039266-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d0w8hc
title: Occurrence Download

description: A dataset containing 370 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kenya",
 "HasCoordinate is true",
 "TaxonKey is Panthera leo (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 370 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008488-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97c7vv
title: Occurrence Download

description: A dataset containing 996 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is France",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Thaumetopoea pityocampa (Denis & Schiffermüller), 1776",
 "Year 1000-2020"
 ]
}

 The dataset includes 996 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0231167-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frwjbf
title: Occurrence Download

description: A dataset containing 107046 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alectoris chukar (J.E.Gray, 1830)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 107046 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051879-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3898hx
title: Occurrence Download

description: A dataset containing 4938 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Triturus marmoratus (Latreille, 1800)"
 ]
}

 The dataset includes 4938 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177752-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uctkbk
title: Occurrence Download

description: A dataset containing 1255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Neopomacentrus cyanomos (Bleeker, 1856))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1255 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051899-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zr6q7x
title: Occurrence Download

description: A dataset containing 251 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phocoena sinus Norris & McFarland, 1958"
 ]
}

 The dataset includes 251 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048173-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sp69ub
title: Occurrence Download

description: A dataset containing 16946 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON(((5.241862535476685 43.294803095683314,5.241862535476685 43.25493380778211,5.340739488601685 43.25493380778211,5.340739488601685 43.294803095683314,5.241862535476685 43.294803095683314)))"
 ]
}

 The dataset includes 16946 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084648-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rynsh2
title: Occurrence Download

description: A dataset containing 7970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyanocitta cristata (Linnaeus, 1758)",
 "Year 2011-2018"
 ]
}

 The dataset includes 7970 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240234-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2q8sum
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cephalotrigona oaxacana Ayala, 1999"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295385-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aaqc9f
title: Occurrence Download

description: A dataset containing 770 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylocereus undatus (Haw.) Britton & Rose"
 ]
}

 The dataset includes 770 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006514-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.coequs
title: Occurrence Download

description: A dataset containing 372 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendropanax caucanus (Harms) Harms"
 ]
}

 The dataset includes 372 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008489-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21680601.v1
title: Additional file 2 of Identification and validation of an E2F-related gene signature for predicting recurrence-free survival in human prostate cancer

description: Additional file 2: Table S2. The GSVA results of TCGA-PRAD dataset.
DOI: 10.6084/m9.figshare.21680610
title: Additional file 5 of Identification and validation of an E2F-related gene signature for predicting recurrence-free survival in human prostate cancer

description: Additional file 5: Table S5. The GSVA results of GSE70768 dataset.
DOI: 10.6084/m9.figshare.21680607.v1
title: Additional file 4 of Identification and validation of an E2F-related gene signature for predicting recurrence-free survival in human prostate cancer

description: Additional file 4: Table S4. The GSVA results of GSE116918 dataset.
DOI: 10.5281/zenodo.10653781
title: 3D Electron Diffraction data of GSF form II

description: 3D electron diffraction (3D ED) data of griseofulvin (GSF) form II collected automatically using software EPU-D at 100 K on a ThermoFisher Titan Krios (300 kV) equipped with a CETA-D detector.

A total of 231 datasets were collected from a sample containing multiple phases of GSF in 2 days. Crystal identification and selection were performed by an operator while 3D ED data collection was carried out fully automatically. Data was processed automatically by software package edtools (https://doi.org/10.5281/zenodo.6953489) using XDS (https://doi.org/10.1107/S0907444909047337). A hierarchical clustering analysis (HCA) algorithm implemented in edtools was used to cluster the datasets belonging to the same phase through the Euclidean distance between the unit cell parameters. Out of the 231 datasets collected, 1 outlying dataset was idneitified as GSF form II.
DOI: 10.5281/zenodo.10653782
title: 3D Electron Diffraction data of GSF form II

description: 3D electron diffraction (3D ED) data of griseofulvin (GSF) form II collected automatically using software EPU-D at 100 K on a ThermoFisher Titan Krios (300 kV) equipped with a CETA-D detector.

A total of 231 datasets were collected from a sample containing multiple phases of GSF in 2 days. Crystal identification and selection were performed by an operator while 3D ED data collection was carried out fully automatically. Data was processed automatically by software package edtools (https://doi.org/10.5281/zenodo.6953489) using XDS (https://doi.org/10.1107/S0907444909047337). A hierarchical clustering analysis (HCA) algorithm implemented in edtools was used to cluster the datasets belonging to the same phase through the Euclidean distance between the unit cell parameters. Out of the 231 datasets collected, 1 outlying dataset was idneitified as GSF form II.
DOI: 10.5281/zenodo.10635812
title: Data from: Comparing three spatial modeling tools for assessing urban ecosystem services

description: The (re)integration of nature into cities has been a progressively promoted strategy to foster sustainable urbanization. To quantify the ecosystem services (ES) provided by urban nature, spatially explicit ES modeling is a key method. However, particularly in absence of independent validation data, there is a clear need for multi-model assessments in order to better understand uncertainties in model outcomes. Here we applied three commonly used open-source ES models (i.e., InVEST, LUCI, NC-Model) to quantify three key urban ES (i.e., local temperature regulation, flood protection and global climate regulation) using the city of The Hague (The Netherlands) as a case study. We quantified the three ES for the current situation and under two hypothetical scenarios representing changes in the amount of vegetation within the city. 

Veerkamp, C. J., Loreti, M., Benavidez, R., Jackson, B., & Schipper A. M. (2023). Comparing three spatial modelling tools for assessing urban ecosystem services. Ecosystem Services, 59, 101500. https://doi.org/10.1016/j.ecoser.2022.101500
DOI: 10.5281/zenodo.10635813
title: Data from: Comparing three spatial modeling tools for assessing urban ecosystem services

description: The (re)integration of nature into cities has been a progressively promoted strategy to foster sustainable urbanization. To quantify the ecosystem services (ES) provided by urban nature, spatially explicit ES modeling is a key method. However, particularly in absence of independent validation data, there is a clear need for multi-model assessments in order to better understand uncertainties in model outcomes. Here we applied three commonly used open-source ES models (i.e., InVEST, LUCI, NC-Model) to quantify three key urban ES (i.e., local temperature regulation, flood protection and global climate regulation) using the city of The Hague (The Netherlands) as a case study. We quantified the three ES for the current situation and under two hypothetical scenarios representing changes in the amount of vegetation within the city. 

Veerkamp, C. J., Loreti, M., Benavidez, R., Jackson, B., & Schipper A. M. (2023). Comparing three spatial modelling tools for assessing urban ecosystem services. Ecosystem Services, 59, 101500. https://doi.org/10.1016/j.ecoser.2022.101500
DOI: 10.6084/m9.figshare.21680610.v1
title: Additional file 5 of Identification and validation of an E2F-related gene signature for predicting recurrence-free survival in human prostate cancer

description: Additional file 5: Table S5. The GSVA results of GSE70768 dataset.
DOI: 10.6084/m9.figshare.19582443
title: Additional file 2 of High-quality chromosome-scale de novo assembly of the Paspalum notatum ‘Flugge’ genome

description: Additional file 2.
DOI: 10.6084/m9.figshare.12777140
title: Metadata record for the manuscript: Preoperative magnetic resonance imaging use and oncologic outcomes in premenopausal breast cancer patients

description: <b>Summary</b>This metadata record provides details of the data supporting the claims of the related manuscript: “Preoperative magnetic resonance imaging use and oncologic outcomes in premenopausal breast cancer patients”.<br>The related study aimed to to clarify the potential benefit of preoperative breast MRI on long-term breast cancer outcomes in younger women (age ≤50 years) by constructing a retrospective cohort of 512 women diagnosed with primary breast cancer seen at the Lynn Sage Breast Center who underwent breast conserving surgery performed at Northwestern Medicine.<br><b>Data access</b>The data supporting the related study and underlying all figures and tables in the related manuscript are collected in the file "df_MRI_de-identified.csv". This file is not publicly available due to data privacy policies regarding participant consent: patients did not provide consent to share their data publicly. However, the data can be provided upon request to the corresponding author:<br>Seema A. Khan<br>Northwestern University<br>United Statesskhan@nmh.org<br><b>Name of Institutional Review Board or ethics committee that approved the study</b><br>Northwestern University Institutional Review Board<br><br><br>
DOI: 10.6084/m9.figshare.23255486.v1
title: Additional file 3 of Chloroplast genome characteristics and phylogeny of the sinodielsia clade (apiaceae: apioideae)

description: Supplementary Material 3
DOI: 10.5281/zenodo.10653367
title: 3D Electron Diffraction data of GSF IC-II

description: 3D electron diffraction (3D ED) data of griseofulvin (GSF) inclusion complex with polyethylene glycol (PEG) form II (GSF IC-II) collected automatically using software EPU-D at 100 K on a ThermoFisher Titan Krios (300 kV) equipped with a CETA-D detector.

A total of 231 datasets were collected from a sample containing multiple phases of GSF in 2 days. Crystal identification and selection were performed by an operator while 3D ED data collection was carried out fully automatically. Data was processed automatically by software package edtools (https://doi.org/10.5281/zenodo.6953489) using XDS (https://doi.org/10.1107/S0907444909047337). A hierarchical clustering analysis (HCA) algorithm implemented in edtools was used to cluster the datasets belonging to the same phase through the Euclidean distance between the unit cell parameters. Out of the 231 datasets collected, 12 datasets were idneitified as the novel GSF IC-II phase.
DOI: 10.5281/zenodo.10653368
title: 3D Electron Diffraction data of GSF IC-II

description: 3D electron diffraction (3D ED) data of griseofulvin (GSF) inclusion complex with polyethylene glycol (PEG) form II (GSF IC-II) collected automatically using software EPU-D at 100 K on a ThermoFisher Titan Krios (300 kV) equipped with a CETA-D detector.

A total of 231 datasets were collected from a sample containing multiple phases of GSF in 2 days. Crystal identification and selection were performed by an operator while 3D ED data collection was carried out fully automatically. Data was processed automatically by software package edtools (https://doi.org/10.5281/zenodo.6953489) using XDS (https://doi.org/10.1107/S0907444909047337). A hierarchical clustering analysis (HCA) algorithm implemented in edtools was used to cluster the datasets belonging to the same phase through the Euclidean distance between the unit cell parameters. Out of the 231 datasets collected, 12 datasets were idneitified as the novel GSF IC-II phase.
DOI: 10.6084/m9.figshare.22729289
title: Additional file 1 of Isolation and characterization of a novel phage belonging to a new genus against Vibrio parahaemolyticus

description: Supplementary Material 1: Table S1: Host range of phage R16F; Table S2: Predicted ORFs in the R16F genome; Table S3: Related phages identified by vCONTACT2 (score &gt; 1)
DOI: 10.5281/zenodo.8124384
title: ERALClim - WMO climate baseline global climate variables derived from ERA5-Land reanalysis data

description: If you use this dataset please cite the accompanying paper (Lea et al., 2024)

Maps of key (bio-)climatic variables derived from all currently available ERA5-Land reanalysis data (Muñoz Sabater et al., 2019). These have been calculated for:

1. All possible World Meteorological Organisation (WMO) 30 year climate baseline periods, including: 1951 to 1980; 1961 to 1990; 1971 to 2000; 1981 to 2010; and 1991 to 2020 (this dataset).

2. Annual timescales from 1951-2022 (see here).

Annual timescale data are calculated using monthly statistics using calendar months that account for leap years. WMO baseline maps are calculated by taking the mean of all annual timescale ERALClim maps that fall within the time periods stated above (inclusive). Image bands are named to map onto equivalent BioClim variables (Fick and Hijmans, 2017).

Global data are provided here in GeoTIFF format as multiband images (where each band represents a different year/variable depending on the data downloaded) at a spatial scale of 0.1 degrees within a WGS84 grid (EPSG:4326). If users require data from point locations and/or subset regions for a specific time range or for a custom range of variables, these can be easily accessed using the Google Earth Engine Climate Tool (GEEClimT). Access to this tool requires a Google Earth Engine account, and is free to use for academic research and education purposes, and users who access data through the tool should cite Lea et al., 2024.

Descriptions of each band within the dataset are listed below:

bio1 - Mean 2 m air temperature derived from hourly data (units: degrees C).

bio2 - Annual mean of monthly mean diurnal 2 m air temperature ranges (units: degrees C).

bio3 - Isothermality (100 * bio2 / bio7) (no units).

bio4 - Standard deviation of monthly mean 2 m air temperatures (units: degrees C).

bio5 - Mean of maximum 2 m air temperature for the warmest month (units: degrees C).

bio6 - Mean of minimum 2 m air temperature for the coldest month (units: degrees C).

bio7 - Annual range of 2 m air temperature (bio5 - bio6) (units: degrees C).

bio8 - Mean 2 m air temperature of wettest 3 month period (units: degrees C).

bio9 - Mean 2 m air temperature of driest 3 month period (units: degrees C).

bio10 - Mean 2 m air temperature of warmest 3 month period (units: degrees C).

bio11 - Mean 2 m air temperature of coldest 3 month period (units: degrees C).

bio12 - Total annual precipitation (units: mm).

bio13 - Total precipitation of wettest month (units: mm).

bio14 - Total precipitation of driest month (units: mm).

bio15 - Precipitation Seasonality (Coefficient of Variation, based on monthly total precipitation data) (no units).

bio16 - Total precipitation in wettest 3 month period (units: mm).

bio17 - Total precipitation in driest 3 month period (units: mm).

bio18 - Total precipitation in warmest 3 month period (units: mm).

bio19 - Total precipitation in coldest 3 month period (units: mm).