cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/9w4cnrdcy2.1
title: Soil organic carbon density data

description: This data includes soil organic carbon density data from the 0-20cm and 0-100cm soil layers on the Qinghai-Tibet Plateau. The data for each soil layer includes actual sampling data and data collected through literature and other datasets, with the aim of providing data support for the protection and management of soil carbon pools in alpine ecosystems.
DOI: 10.17632/rt43rdk66w
title: Hemocyanin modulates hemolymph Vibrio homeostasis through intracellular ROS levels via p38 MAPK

description: Redox reactions are essential for various biological processes, hence, maintaining redox homeostasis is critical for cellular health and host-microbe interactions, particularly in marine invertebrates, where these processes remain poorly understood. This study investigates the role of the respiratory protein hemocyanin in regulating redox-related genes, reactive oxygen species (ROS) levels in shrimp hemocytes, and its influence on immune function and hemolymph Vibrio abundance. Our results show that hemocyanin is crucial in the regulation of the redox system, as hemocyanin knockdown disrupts the expression of antioxidant (PvPOD and PvGPX) and pro-oxidant (PvXOX) genes, leading to elevated ROS levels in hemocytes. Additionally, we found that hemocyanin controls redox homeostasis in hemocytes through the p38-MAPK-c-Jun signaling pathway. Moreover, ROS levels regulated by hemocyanin via the MAPK pathway impacted on hemolymph Vibrio abundance. These findings highlight a crucial role of hemocyanin as an antioxidant that modulates redox balance in shrimp hemocytes, with significant implications for immune defense and microbial homeostasis, offering new insights into antioxidative mechanisms in marine invertebrates.
DOI: 10.17632/rt43rdk66w.2
title: Hemocyanin modulates hemolymph Vibrio homeostasis through intracellular ROS levels via p38 MAPK

description: Redox reactions are essential for various biological processes, hence, maintaining redox homeostasis is critical for cellular health and host-microbe interactions, particularly in marine invertebrates, where these processes remain poorly understood. This study investigates the role of the respiratory protein hemocyanin in regulating redox-related genes, reactive oxygen species (ROS) levels in shrimp hemocytes, and its influence on immune function and hemolymph Vibrio abundance. Our results show that hemocyanin is crucial in the regulation of the redox system, as hemocyanin knockdown disrupts the expression of antioxidant (PvPOD and PvGPX) and pro-oxidant (PvXOX) genes, leading to elevated ROS levels in hemocytes. Additionally, we found that hemocyanin controls redox homeostasis in hemocytes through the p38-MAPK-c-Jun signaling pathway. Moreover, ROS levels regulated by hemocyanin via the MAPK pathway impacted on hemolymph Vibrio abundance. These findings highlight a crucial role of hemocyanin as an antioxidant that modulates redox balance in shrimp hemocytes, with significant implications for immune defense and microbial homeostasis, offering new insights into antioxidative mechanisms in marine invertebrates.
DOI: 10.17632/wyvkw6f95t
title: Integrated single-cell transcriptome and TCR profiles of hepatocellular carcinoma highlights the convergence on interferon signaling during immunotherapy

description: Processed scRNA and scTCR data accompanying this manuscript
DOI: 10.17632/wyvkw6f95t.1
title: Integrated single-cell transcriptome and TCR profiles of hepatocellular carcinoma highlights the convergence on interferon signaling during immunotherapy

description: Processed scRNA and scTCR data accompanying this manuscript
DOI: 10.15468/dl.y7bbxe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"IND.28.12_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009532-260108223611665/datasets/export for details.
DOI: 10.17632/j5v798r6f5
title: 60 publications across mathematics, physics, psychology, molecular drug discovery, AGI and quantum chip production

description: After the Higgs: Missed Opportunities in Gauge Vacuum Diagnostics and the Photonic Sector
Evaluating Large Language Model Meta-Cognition ..
A Follow-up Work to AISA-T: ..
The Animate and the Inanimate in Pure Mathematics..
Identifying Theoretical Gaps in Hawking’s Black Hole Radiation Model in Light of Modern Photonics and Higher-Dimensional Photon Propagation : Photon-Coupled Soft Hair and Higher-Dimensional Photon Channels - A Critical Extension of the Soft-Hair Formalism
Bose’s Photonic Mathematics Revisited: Entropic Optimization, Polylogarithmic Asymptotics, and Categorical Coherence from Symmetric Functions to ZX-Calculus
Integrating Circadian Rhythm and Neurobiology in Precision Medicine: ...
Directed Evolution of the BpsA Carrier Protein Domain for Enhanced Activation by Non-Cognate 4’-Phosphopantetheinyl Transferases Implications for ASD Drug Discovery
Solutions for Photonic Approaches to Fusion Energy
Quantum Sector-Gate Dynamics for Artificial General Intelligence
On a Newfound Panorama in Geometry and Category Theory: A Tribute to Grothendieck
A new field: Stochastic–Dynamical Interactions: A Hairer–Mirzakhani Framework for Photon Dynamics
On Higher-Dimensional Soul Perturbations via Higgs–Photon Couplings
Interferometric Sector-Gate Quantum Dynamics for AGI: Parity-Driven Tunneling First and the Case for a Topological Core
James Clerk Maxwell: A Mathematical Biography
Photon Soul Continuity: An Unobserved Extension of Maxwell’s Equations
Quantum Eigenstate Dynamics for Artificial General Intelligence Synthesis
Emerging Photonic Principles and Negative Effective Mass A Mathematical Treatise in the Tradition of Grothendieck
Photon Soul Continuity - Unobserved Extension of Maxwell’s Equations: Pathways
Perspective: Molecular-Action Pathways for Autism Drug Discovery: Organoids, Circadian Dynamics, and Genetic Engineering
Play-Based Interventions for Promoting Positive Developmental Outcomes in Autism Spectrum Disorder: ...
The Holographic State Space: A Mathematical Formalism for the Cosmic Storehouse: Proto-theory
The Photon Soul Theorem: A Cohomological Approach to Interference Visibility
Quantum Eigenstate Dynamics for Artificial General Intelligence Synthesis (Expanded)
Photon Soul Resonance: A Breakthrough Extension of Soul Continuity
Beyond the Standard Model: Analytic Approach for the detection related to Unobserved Laws of Nature
Newly discovered Potentials for Topos Theory from Grothendieck’s Handwritten Notes: ...
A Unified Framework for Photon-Soul Continuity: From Deterministic Stability to Stochastic Renormalization and Geometric Averaging
Applying Villani to understand Cosmic Gas: Kinetics for Classical and Quantum Gas Dynamics: On the Emergence of Quantum Turbulence in Cosmic Media
Illuminating the Breakthrough: A Dual Verification of the Geometric Langlands Conjecture Proof
Yang‒Mills Existence and Mass Gap in Four Dimensions:...
and twenty-nine more.
DOI: 10.17632/j5v798r6f5.3
title: 60 publications across mathematics, physics, psychology, molecular drug discovery, AGI and quantum chip production

description: After the Higgs: Missed Opportunities in Gauge Vacuum Diagnostics and the Photonic Sector
Evaluating Large Language Model Meta-Cognition ..
A Follow-up Work to AISA-T: ..
The Animate and the Inanimate in Pure Mathematics..
Identifying Theoretical Gaps in Hawking’s Black Hole Radiation Model in Light of Modern Photonics and Higher-Dimensional Photon Propagation : Photon-Coupled Soft Hair and Higher-Dimensional Photon Channels - A Critical Extension of the Soft-Hair Formalism
Bose’s Photonic Mathematics Revisited: Entropic Optimization, Polylogarithmic Asymptotics, and Categorical Coherence from Symmetric Functions to ZX-Calculus
Integrating Circadian Rhythm and Neurobiology in Precision Medicine: ...
Directed Evolution of the BpsA Carrier Protein Domain for Enhanced Activation by Non-Cognate 4’-Phosphopantetheinyl Transferases Implications for ASD Drug Discovery
Solutions for Photonic Approaches to Fusion Energy
Quantum Sector-Gate Dynamics for Artificial General Intelligence
On a Newfound Panorama in Geometry and Category Theory: A Tribute to Grothendieck
A new field: Stochastic–Dynamical Interactions: A Hairer–Mirzakhani Framework for Photon Dynamics
On Higher-Dimensional Soul Perturbations via Higgs–Photon Couplings
Interferometric Sector-Gate Quantum Dynamics for AGI: Parity-Driven Tunneling First and the Case for a Topological Core
James Clerk Maxwell: A Mathematical Biography
Photon Soul Continuity: An Unobserved Extension of Maxwell’s Equations
Quantum Eigenstate Dynamics for Artificial General Intelligence Synthesis
Emerging Photonic Principles and Negative Effective Mass A Mathematical Treatise in the Tradition of Grothendieck
Photon Soul Continuity - Unobserved Extension of Maxwell’s Equations: Pathways
Perspective: Molecular-Action Pathways for Autism Drug Discovery: Organoids, Circadian Dynamics, and Genetic Engineering
Play-Based Interventions for Promoting Positive Developmental Outcomes in Autism Spectrum Disorder: ...
The Holographic State Space: A Mathematical Formalism for the Cosmic Storehouse: Proto-theory
The Photon Soul Theorem: A Cohomological Approach to Interference Visibility
Quantum Eigenstate Dynamics for Artificial General Intelligence Synthesis (Expanded)
Photon Soul Resonance: A Breakthrough Extension of Soul Continuity
Beyond the Standard Model: Analytic Approach for the detection related to Unobserved Laws of Nature
Newly discovered Potentials for Topos Theory from Grothendieck’s Handwritten Notes: ...
A Unified Framework for Photon-Soul Continuity: From Deterministic Stability to Stochastic Renormalization and Geometric Averaging
Applying Villani to understand Cosmic Gas: Kinetics for Classical and Quantum Gas Dynamics: On the Emergence of Quantum Turbulence in Cosmic Media
Illuminating the Breakthrough: A Dual Verification of the Geometric Langlands Conjecture Proof
Yang‒Mills Existence and Mass Gap in Four Dimensions:...
and twenty-nine more.
DOI: 10.15468/dl.7tmsm5
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.37.10_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009533-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e244166
title: NCHS - Pregnancy Rates, by Age for Hispanic Women: United States, 1990-2010

description: https://www.cdc.gov/nchs/data-visualization/natality-trends/index.htm
description: (Downloaded 1/9/2026)
DOI: 10.3886/e244166v1
title: NCHS - Pregnancy Rates, by Age for Hispanic Women: United States, 1990-2010

description: https://www.cdc.gov/nchs/data-visualization/natality-trends/index.htm
description: (Downloaded 1/9/2026)
DOI: 10.17632/trvb5k4x5m
title: Dataset on Resource Allocation and Usage for a Private Cloud

description: This dataset contains data collected over approximately one year from the operational environment of a private OpenStack-based cloud operated by the Distributed Systems Laboratory (LSD) at the Federal University of Campina Grande, Brazil (https://www.lsd.ufcg.edu.br/). It includes 7 interrelated tables describing projects, users, virtual machines and their associated hardware configurations (known as flavors in OpenStack), quotas, ownerships, and resource usage metrics. We expect this dataset to support further studies and applications related to cloud infrastructure analysis, optimization, and management.
DOI: 10.17632/trvb5k4x5m.2
title: Dataset on Resource Allocation and Usage for a Private Cloud

description: This dataset contains data collected over approximately one year from the operational environment of a private OpenStack-based cloud operated by the Distributed Systems Laboratory (LSD) at the Federal University of Campina Grande, Brazil (https://www.lsd.ufcg.edu.br/). It includes 7 interrelated tables describing projects, users, virtual machines and their associated hardware configurations (known as flavors in OpenStack), quotas, ownerships, and resource usage metrics. We expect this dataset to support further studies and applications related to cloud infrastructure analysis, optimization, and management.
DOI: 10.15468/dl.cpqhzb
title: Occurrence Download

description: A dataset containing 166142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((97 26,109 26,109 35,97 35,97 26))",
 "OccurrenceStatus is Present",
 "Year 2024-2026"
 ]
}

 The dataset includes 166142 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009485-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e240171v1
title: Global Shellac Market Analysis

description: The global Shellac Market was valued at USD 200 million in
2024 and is projected to reach USD 210 million in 2025. The market is expected
to grow to USD 240 million by 2030, exhibiting a compound annual growth rate
(CAGR) of 4.82% from 2025 to 2030. The growth is driven by increasing demand
for natural, eco-friendly materials across food, pharmaceuticals, cosmetics,
and wood coatings sectors.<br><br>For more Information visit: https://www.nextmsc.com/report/shellac-market-mc3535
DOI: 10.3886/e240170v1
title: Global Spices & Seasonings Market Analysis

description: The global Spices & Seasonings Market was valued at USD
25.83 billion in 2024 and is expected to reach USD 27.66 billion by 2025. The
market is projected to grow to USD 38.98 billion by 2030, with a compound
annual growth rate (CAGR) of 7.1% from 2025 to 2030. Growth is driven by
increasing consumer demand for flavorful and ethnic foods, expanding
foodservice sectors, and rising preference for organic and clean-label
products.<br><br>For more information visit: https://www.nextmsc.com/report/spices-seasonings-market-rc3536
DOI: 10.5281/zenodo.15089977
title: Immunomodulatory effects of dental pulp stem cells on lymphocytes and monocytes from patients with rheumatoid arthritis   Part 1

description: .FCS are flow cytometry files

Immune checkpoint expression was evaluated on DPSCs

DPSCs were detached with trypsin/EDTA (Gibco, ThermoFisher) and analyzed by flow cytometry to quantify the expression of PD-L1, PD-L2, CD155, Galectin-9, CD80, CD86, and 4-1BBL. Cells were suspended in 100 μL PBS with 0.1% Fixable Dead Cell Stain near-IR-fluorescent reactive dye (Thermo Fisher Scientific), and stained for 15 min at room temperature. After washing with PBS + 1% FBS, cells were suspended in 100 μL PBS + 1% FBS containing the following antibodies combined in two mixes:

(1) PerCP anti-human CD45 (clone REA747), PE anti-human CD155 (clone REA1081), PE-Cy7 anti-human PD-L1 (clone 29E.2A3), APC anti-human CD80 (clone REA661) and FITC anti-human CD86 (clone REA968); 

(2) PerCP anti-human CD45 (clone REA747), PE anti-human 4-1BBL (CD137L) (clone REA254) and APC anti-human PD-L2 (clone REA 985). 

Cells were stained for 30 min on ice. After washing, cells stained with mix 1 were suspended in 300 μL PBS + 1% FBS for subsequent acquisition while cells stained with mix 2 were fixed and permeabilized for 20 minutes at 4°C using 250 µl BD fixation/permeabilization solution (BD Biosciences). After washing twice with 1 ml BD permeabilization/washing buffer (BD Biosciences), cells were stained with the FITC anti-human Galectin 9 antibodies (clone 435) in 100 µl BD permeabilization/washing buffer for 30 minutes at 4°C. After washing with 1 ml BD permeabilization/washing buffer, cells were suspended in 300 μL PBS + 1% FBS to be acquired.

All cells were acquired with the FACS Canto II flow cytometer (BD Biosciences) equipped with two lasers for excitation at 488 and 633 nm.

All antibodies were purchased from Miltenyi Biotec, except PE-Cy7 anti-human PD-L1 which was purchased from BioLegend Inc, and used as suggested by the manufacturers.

Labeling of the files.

Files indicate: Experiment number _ Patient number _ Tube number _ Sample type and stimulus _ Mix number
DOI: 10.5281/zenodo.15089978
title: Immunomodulatory effects of dental pulp stem cells on lymphocytes and monocytes from patients with rheumatoid arthritis   Part 1

description: .FCS are flow cytometry files

Immune checkpoint expression was evaluated on DPSCs

DPSCs were detached with trypsin/EDTA (Gibco, ThermoFisher) and analyzed by flow cytometry to quantify the expression of PD-L1, PD-L2, CD155, Galectin-9, CD80, CD86, and 4-1BBL. Cells were suspended in 100 μL PBS with 0.1% Fixable Dead Cell Stain near-IR-fluorescent reactive dye (Thermo Fisher Scientific), and stained for 15 min at room temperature. After washing with PBS + 1% FBS, cells were suspended in 100 μL PBS + 1% FBS containing the following antibodies combined in two mixes:

(1) PerCP anti-human CD45 (clone REA747), PE anti-human CD155 (clone REA1081), PE-Cy7 anti-human PD-L1 (clone 29E.2A3), APC anti-human CD80 (clone REA661) and FITC anti-human CD86 (clone REA968); 

(2) PerCP anti-human CD45 (clone REA747), PE anti-human 4-1BBL (CD137L) (clone REA254) and APC anti-human PD-L2 (clone REA 985). 

Cells were stained for 30 min on ice. After washing, cells stained with mix 1 were suspended in 300 μL PBS + 1% FBS for subsequent acquisition while cells stained with mix 2 were fixed and permeabilized for 20 minutes at 4°C using 250 µl BD fixation/permeabilization solution (BD Biosciences). After washing twice with 1 ml BD permeabilization/washing buffer (BD Biosciences), cells were stained with the FITC anti-human Galectin 9 antibodies (clone 435) in 100 µl BD permeabilization/washing buffer for 30 minutes at 4°C. After washing with 1 ml BD permeabilization/washing buffer, cells were suspended in 300 μL PBS + 1% FBS to be acquired.

All cells were acquired with the FACS Canto II flow cytometer (BD Biosciences) equipped with two lasers for excitation at 488 and 633 nm.

All antibodies were purchased from Miltenyi Biotec, except PE-Cy7 anti-human PD-L1 which was purchased from BioLegend Inc, and used as suggested by the manufacturers.

Labeling of the files.

Files indicate: Experiment number _ Patient number _ Tube number _ Sample type and stimulus _ Mix number
DOI: 10.5281/zenodo.15551330
title: Dataset for "Directly Measuring the Connectivity between Isoener- getic Light-Harvesting Antennas in Plant Photosystem II at Physiological Temperature"

description: The dataset is divided into different folders:



Linear: Contains the linear absorption data.

Pumpspec: Contains the excitation pump spectrum used in 2DES.

2D: Contains the 2DES data for different complexes: monomer means LHCII monomers, trimer means LHCII trimers, pentamer means M-CP2. The 2DES spectra at parallel, perpendicular, magic angle, and 2DREAM (anisotropy) are included.
DOI: 10.5281/zenodo.15551331
title: Dataset for "Directly Measuring the Connectivity between Isoener- getic Light-Harvesting Antennas in Plant Photosystem II at Physiological Temperature"

description: The dataset is divided into different folders:



Linear: Contains the linear absorption data.

Pumpspec: Contains the excitation pump spectrum used in 2DES.

2D: Contains the 2DES data for different complexes: monomer means LHCII monomers, trimer means LHCII trimers, pentamer means M-CP2. The 2DES spectra at parallel, perpendicular, magic angle, and 2DREAM (anisotropy) are included.
DOI: 10.15468/dl.m4xmkn
title: Occurrence Download

description: A dataset containing 14280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Euphorbia terracina"
 ]
}

 The dataset includes 14280 records from 195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034704-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23tryw
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chloris gayana",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034706-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxhtg8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chloris gayana",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034707-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16923867
title: Pathogenesis of Pseudorabies Virus in Mouse Placenta: Insights into Maternal-Infant Transmission Mechanisms

description: Pseudorabies virus (PRV) infection poses a significant threat to reproductive success in pregnant animals, often leading to abortion and stillbirth. Systematic studies on the vertical transmission mechanism of PRV through the placenta remains limited. To address this research gap, we developed a PRV infection model in pregnant mice. Immunohistochemical analysis detected strong PRV-positive signals in placental trophoblasts and fetal brains, with viral loads significantly higher than those in the maternal bloodstream. These results suggest that PRV can infect the placenta via maternal circulation and subsequently be transmitted to the fetus. Further analysis revealed that PRV infection disrupts placental vascular architecture and compromises the integrity of tight junction proteins (TJPs) ZO-1 and Occludin, facilitating viral entry into fetal tissues. Additionally, maternal progesterone levels were significantly reduced following infection, potentially impairing placental function and stability. Transcriptomic profiling of placental tissues showed activation of inflammatory responses, oxidative stress, and cell death pathways. Concurrently, genes involved in hormone biosynthesis, angiogenesis, and trophoblast proliferation and differentiation were markedly downregulated. Together, these results indicate that PRV compromises placental integrity through a combination of physical barrier disruption, hormonal dysregulation, inflammatory microenvironment formation, and vascular dysfunction. This provides a reference for the mechanism of vertical transmission of PRV through the placenta.