cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14483543
title: Early speech and language intervention in Brazilian-Portuguese toddlers with cleft lip and/or palate

description: Young children with cleft palate with or without cleft lip (CL/P) are at risk for early vocabulary and speech sound production delays. Early intervention studies have shown some promising findings to promote early speech and vocabulary development following palate repair; however, we know little about how these interventions can be used in other international contexts. This study adapted an early speech and language intervention developed in the US, Enhanced Milieu Teaching with Phonological Emphasis (EMT+PE), to the Brazilian context at the Hospital for Rehabilitation of Craniofacial Anomalies at the University of São Paulo-Bauru. The purpose of this study was to compare the speech and language performance of 24 toddlers with CL/P randomized into an EMT+PE intervention group and a business-as–usual (BAU) comparison group over three time points: prior to, immediately following, and three months after intervention. Results immediately following intervention indicate gains in multiple measures of language. Three months following intervention, participants showed gains in both language and speech measures.
DOI: 10.6084/m9.figshare.17702088
title: Genome-wide identification and analysis of the <i>PAL</i> genes from the orchids <i>Apostasia shenzhenica, Dendrobium catenatum</i> and <i>Phalaenopsis equestris</i>

description: Phenylalanine ammonia-lyase (PAL) is a key gateway enzyme that connects the phenylpropanoid pathway to primary metabolism. The phenylpropanoid pathway plays a vital role in the growth and environmental adaptation of many plants leading to the production of valuable bioactive compounds with industrial and medical applications. In the present study, nine putative <i>PAL</i> genes from three orchids were identified; five in <i>Apostasia shenzhenica</i> and two each in <i>Dendrobium catenatum</i> and <i>Phalaenopsis equestris</i>. Eighteen motifs and four major conserved functional domains were identified as reported in PAL proteins of other species. All the nine PALs were stable based on their computed physicochemical properties and localized in the cytoplasm. The three-dimensional structures of PALs revealed a homo-tetrameric structure consisting of four identical subunits. A total of 21 cis-regulatory elements with known functions were identified from the promoter regions of all PALs which are responsible for various plant responses to light, stress and growth regulators like auxins, gibberellins and abscisic acid. Phylogenetic analysis showed that the studied PAL proteins clustered in two major clades (clade I and II), placing dicot and monocot PALs in two separate monophyletic clades. <i>In silico</i> gene expression of the identified <i>PALs</i> in different vegetative and reproductive tissues revealed the differential expressions based on tissue type and disclosed that the expression of <i>PAL</i> genes was upregulated in all the tissues examined with an exception of <i>PePAL</i> leaf samples where no expression was detected, however, the same being highly expressed in reproductive tissues (<i>PePAL1</i>-labellum; <i>PePAL2</i>-sepal). In case of <i>AsPALs</i>, the expression was found to be highest in reproductive tissues (<i>AsPAL</i>4-maximum in inflorescence). On the other hand, the expression of <i>DcPALs</i> was found to be highest in vegetative tissues (<i>DcPAL2-</i>maximum in root). Based on the medicinal importance of orchids and the significant role of <i>PAL</i> genes in synthesis of bioactive compounds, the functional characterization of <i>PAL</i> genes can be further exploited in genetic improvement of medicinal orchids. Communicated by Ramaswamy H. Sarma
DOI: 10.5281/zenodo.5808707
title: Behavioral evidence of altered sensory attenuation in obesity.

description: This dataset is related to the following article: Scarpina F, Fossataro C, Rossi Sebastiano A, Bruni F, Scacchi M, Mauro A, Garbarini F. EXPRESS: Behavioral evidence of altered sensory attenuation in obesity. Q J Exp Psychol (Hove). 2021 Nov 26:17470218211065766. doi: 10.1177/17470218211065766.
DOI: 10.5281/zenodo.5808706
title: Behavioral evidence of altered sensory attenuation in obesity.

description: This dataset is related to the following article: Scarpina F, Fossataro C, Rossi Sebastiano A, Bruni F, Scacchi M, Mauro A, Garbarini F. EXPRESS: Behavioral evidence of altered sensory attenuation in obesity. Q J Exp Psychol (Hove). 2021 Nov 26:17470218211065766. doi: 10.1177/17470218211065766.
DOI: 10.5281/zenodo.5808709
title: Psychological Well-Being in Obstructive Sleep Apnea Syndrome Associated With Obesity: The Relationship With Personality, Cognitive Functioning, and Subjective and Objective Sleep Quality

description: This dataset is related to the following article: Scarpina F, Bastoni I, Cappelli S, Priano L, Giacomotti E, Castelnuovo G, Molinari E, Tovaglieri IMA, Cornacchia M, Fanari P, Mauro A. Psychological Well-Being in Obstructive Sleep Apnea Syndrome Associated With Obesity: The Relationship With Personality, Cognitive Functioning, and Subjective and Objective Sleep Quality. Front Psychol. 2021 Feb 19;12:588767. doi: 10.3389/fpsyg.2021.588767. PMID: 33679512; PMCID: PMC7933550.
DOI: 10.5281/zenodo.5808708
title: Psychological Well-Being in Obstructive Sleep Apnea Syndrome Associated With Obesity: The Relationship With Personality, Cognitive Functioning, and Subjective and Objective Sleep Quality

description: This dataset is related to the following article: Scarpina F, Bastoni I, Cappelli S, Priano L, Giacomotti E, Castelnuovo G, Molinari E, Tovaglieri IMA, Cornacchia M, Fanari P, Mauro A. Psychological Well-Being in Obstructive Sleep Apnea Syndrome Associated With Obesity: The Relationship With Personality, Cognitive Functioning, and Subjective and Objective Sleep Quality. Front Psychol. 2021 Feb 19;12:588767. doi: 10.3389/fpsyg.2021.588767. PMID: 33679512; PMCID: PMC7933550.
DOI: 10.5281/zenodo.5808713
title: Short-Term Effects of a Multidisciplinary Residential Rehabilitation Program on Perceived Risks, Confidence Toward Continuous Positive Airway Pressure Treatment, and Self-Efficacy in a Sample of Individuals Affected by Obstructive Sleep Apnea Syndrome.

description: This dataset is related to the following article: Scarpina F, Bastoni I, Cappelli S, Priano L, Giacomotti E, Castelnuovo G, Molinari E, Tovaglieri IMA, Cornacchia M, Fanari P, Mauro A. Short-Term Effects of a Multidisciplinary Residential Rehabilitation Program on Perceived Risks, Confidence Toward Continuous Positive Airway Pressure Treatment, and Self-Efficacy in a Sample of Individuals Affected by Obstructive Sleep Apnea Syndrome. Front Psychol. 2021 Aug 18;12:703089. doi: 10.3389/fpsyg.2021.703089. PMID: 34484053; PMCID: PMC8416346.
DOI: 10.5281/zenodo.5808712
title: Short-Term Effects of a Multidisciplinary Residential Rehabilitation Program on Perceived Risks, Confidence Toward Continuous Positive Airway Pressure Treatment, and Self-Efficacy in a Sample of Individuals Affected by Obstructive Sleep Apnea Syndrome.

description: This dataset is related to the following article: Scarpina F, Bastoni I, Cappelli S, Priano L, Giacomotti E, Castelnuovo G, Molinari E, Tovaglieri IMA, Cornacchia M, Fanari P, Mauro A. Short-Term Effects of a Multidisciplinary Residential Rehabilitation Program on Perceived Risks, Confidence Toward Continuous Positive Airway Pressure Treatment, and Self-Efficacy in a Sample of Individuals Affected by Obstructive Sleep Apnea Syndrome. Front Psychol. 2021 Aug 18;12:703089. doi: 10.3389/fpsyg.2021.703089. PMID: 34484053; PMCID: PMC8416346.
DOI: 10.6084/m9.figshare.8221892
title: The Long-Term Impacts of Violent Conflicts on Human Capital: US Bombing and, Education, Earnings, Health, Fertility and Marriage in Cambodia

description: <i>We combine household surveys and the intensity of bombing to investigate the long-term impact of US bombing during the 1969–1973 period on education, earnings, health, fertility and marriage in Cambodia. The novelty of this paper consists of the use of the quantity of bombs dropped in each geographic district, which allows the estimation of the effects of the intensity of bombing. Taking into account this intensive margin adds significant insights to using a binary exposure to bombing that has been reported in previous research. We find that one standard deviation increase in the intensity of bombing during 1969–1973 reduced years of schooling by about 0.11–0.23. The effects for men are larger than those for women. Fertility (total births) increased by 0.20 and age at first marriage for girls declined by 0.32 year. The reduction in years of education completed does not seem to have affected earnings, however. Similarly, we did not detect any significant effect on health.</i>
DOI: 10.6084/m9.figshare.8221892.v1
title: The Long-Term Impacts of Violent Conflicts on Human Capital: US Bombing and, Education, Earnings, Health, Fertility and Marriage in Cambodia

description: <i>We combine household surveys and the intensity of bombing to investigate the long-term impact of US bombing during the 1969–1973 period on education, earnings, health, fertility and marriage in Cambodia. The novelty of this paper consists of the use of the quantity of bombs dropped in each geographic district, which allows the estimation of the effects of the intensity of bombing. Taking into account this intensive margin adds significant insights to using a binary exposure to bombing that has been reported in previous research. We find that one standard deviation increase in the intensity of bombing during 1969–1973 reduced years of schooling by about 0.11–0.23. The effects for men are larger than those for women. Fertility (total births) increased by 0.20 and age at first marriage for girls declined by 0.32 year. The reduction in years of education completed does not seem to have affected earnings, however. Similarly, we did not detect any significant effect on health.</i>
DOI: 10.5517/ccdc.csd.cc295rhr
title: CCDC 2120694: Experimental Crystal Structure Determination

description: Related Article: Savvas Ntanatsidis, Spyros Perontsis, Sofia Konstantopoulou, Stavros Kalogiannis, Antonios G. Hatzidimitriou, Athanasios N. Papadopoulos, George Psomas|2021|J.Inorg.Biochem.|227|111693|doi:10.1016/j.jinorgbio.2021.111693
DOI: 10.6084/m9.figshare.14984415
title: Trans Cohorts Metabolomic Modulation Following Long-Term Successful Therapy in HIV-Infection

description: Metabolomics and proteomics data
DOI: 10.5519/qd.qg7v1tgm
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (603 records)
DOI: 10.5281/zenodo.5749397
title: Fracturing and coloring of cremated bones from a Neolithic mortuary house at Bollbacken, Sweden

description: Spreadsheet containing analysis of types of fractures and coloring of cremated human and animal bones found in a mortuary house at the site Bollbacken, Västmanland, Sweden. The site belonged to the Pitted Ware culture and was dated to ca 2600-2300 BCE. The analysis was done as part of a PhD project studying cremation practices in 3rd millennium BCE Sweden, particularly evidence of whether the dead had been cremated shortly after death, or when they were de-fleshed. Version 1_1 contains persistent identifiers for key concepts in the dataset (geographical locations, museum inventory number etc)
DOI: 10.5281/zenodo.5018688
title: Fracturing and coloring of cremated bones from a Neolithic mortuary house at Bollbacken, Sweden

description: Spreadsheet containing analysis of types of fractures and coloring of cremated human and animal bones found in a mortuary house at the site Bollbacken, Västmanland, Sweden. The site belonged to the Pitted Ware culture and was dated to ca 2600-2300 BCE. The analysis was done as part of a PhD project studying cremation practices in 3rd millennium BCE Sweden, particularly evidence of whether the dead had been cremated shortly after death, or when they were de-fleshed. Version 1_1 contains persistent identifiers for key concepts in the dataset (geographical locations, museum inventory number etc)
DOI: 10.5519/qd.9h7rqh9c
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (58 records)
DOI: 10.15161/oar.it/74372
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.15164484
title: Classification result objects

description: Results after classifying 38 reviews using active learning
DOI: 10.6084/m9.figshare.15164484.v1
title: Classification result objects

description: Results after classifying 38 reviews using active learning
DOI: 10.5281/zenodo.5808779
title: Linked Pipe: Ogham Recogito Annotation to QGIS Map

description: A Linked Pipe for Ogham from the CIIC Book via Recogito Annotations to QGIS Map.
DOI: 10.5281/zenodo.5808778
title: Linked Pipe: Ogham Recogito Annotation to QGIS Map

description: A Linked Pipe for Ogham from the CIIC Book via Recogito Annotations to QGIS Map.
DOI: 10.6084/m9.figshare.17702186
title: Prepared feature matrix

description: Prepared feature matrix, result of data gathering and cleaning.
DOI: 10.6084/m9.figshare.17702186.v1
title: Prepared feature matrix

description: Prepared feature matrix, result of data gathering and cleaning.
DOI: 10.6084/m9.figshare.17702189
title: Stratified classification performance results

description: Measured classification performance, stratified to the initial pool size.
DOI: 10.6084/m9.figshare.17702189.v1
title: Stratified classification performance results

description: Measured classification performance, stratified to the initial pool size.
DOI: 10.6084/m9.figshare.17702183
title: Dataset Technostress and Working from Home

description: This is the dataset of the respective research paper.<br>
DOI: 10.6084/m9.figshare.13636652
title: Data from: Functional diversity regulates the effects of habitat degradation on biocrust phylogenetic and taxonomic diversities

description: Biocrusts are major contributors to dryland diversity, functioning and services. However, little is known about how habitat degradation will impact multiple facets of biocrust diversity and measurable functional traits. We evaluated changes in taxonomic, functional and phylogenetic diversity of biocrust-forming lichens along a habitat degradation gradient related to the presence of linear infrastructure (i.e., a road) and a profound agricultural driven transformation. To do so, we selected 50 remnants of a Mediterranean shrubland. We considered several surrogates of habitat quality and causal disturbance on the various diversity facets of biocrusts by using structural equation modelling, hypothesizing that habitat degradation primarily affects functional diversity, which in turn regulates changes in taxonomic and phylogenetic diversities, and also that taxonomic and phylogenetic diversities are coupled. Fragment connectivity, distance to linear infrastructure (i.e., a road) and, particularly, soil fertility (i.e., soil P concentration), had mostly negative effects on biocrust functional diversity, which in turn affected both taxonomic and phylogenetic diversities. However, we found no direct effects of habitat degradation variables on the taxonomic and phylogenetic diversities. We also found that increases in phylogenetic diversity had a positive effect on taxonomic diversity along the habitat degradation gradient. Our results indicate that functional diversity of biocrusts is strongly affected by habitat degradation, which may profoundly alter their contribution to ecosystem functioning and services. Furthermore, functional diversity regulates the response of biocrust taxonomic and phylogenetic diversity to habitat degradation. These findings indicate that habitat degradation alters and simplifies the diversity of functional traits of biocrust-forming lichens, leading to biodiversity loss, with important consequences for the conservation of global drylands biodiversity.
DOI: 10.6084/m9.figshare.13636652.v1
title: Data from: Functional diversity regulates the effects of habitat degradation on biocrust phylogenetic and taxonomic diversities

description: Biocrusts are major contributors to dryland diversity, functioning and services. However, little is known about how habitat degradation will impact multiple facets of biocrust diversity and measurable functional traits. We evaluated changes in taxonomic, functional and phylogenetic diversity of biocrust-forming lichens along a habitat degradation gradient related to the presence of linear infrastructure (i.e., a road) and a profound agricultural driven transformation. To do so, we selected 50 remnants of a Mediterranean shrubland. We considered several surrogates of habitat quality and causal disturbance on the various diversity facets of biocrusts by using structural equation modelling, hypothesizing that habitat degradation primarily affects functional diversity, which in turn regulates changes in taxonomic and phylogenetic diversities, and also that taxonomic and phylogenetic diversities are coupled. Fragment connectivity, distance to linear infrastructure (i.e., a road) and, particularly, soil fertility (i.e., soil P concentration), had mostly negative effects on biocrust functional diversity, which in turn affected both taxonomic and phylogenetic diversities. However, we found no direct effects of habitat degradation variables on the taxonomic and phylogenetic diversities. We also found that increases in phylogenetic diversity had a positive effect on taxonomic diversity along the habitat degradation gradient. Our results indicate that functional diversity of biocrusts is strongly affected by habitat degradation, which may profoundly alter their contribution to ecosystem functioning and services. Furthermore, functional diversity regulates the response of biocrust taxonomic and phylogenetic diversity to habitat degradation. These findings indicate that habitat degradation alters and simplifies the diversity of functional traits of biocrust-forming lichens, leading to biodiversity loss, with important consequences for the conservation of global drylands biodiversity.
DOI: 10.5281/zenodo.5808528
title: Supplementary Data for: Unique Transcriptomic Changes Underlie Hormonal Interactions During Mammary Histomorphogenesis in Female Pigs

description: Successful lactation and the risk for developing breast cancer depend on growth and differentiation of the mammary gland (MG) epithelium that is regulated by ovarian steroids (17beta-estradiol [E] and progesterone [P]) and pituitary-derived prolactin (PRL). Given that the MG of pigs share histomorphogenic features present in the normal human breast, we sought to define the transcriptional responses within the MG of pigs following exposure to all combinations of these hormones. Hormone-ablated female pigs were administered combinations of E, medroxyprogesterone 17-acetate (source of P), and either haloperidol (to induce PRL) or 2-bromo-a-ergocryptine. We subsequently monitored phenotypic changes in the MG including mitosis, receptors for E and P (ESR1 and PGR), level of phosphorylated STAT5 (pSTAT5), and the frequency of terminal ductal lobular unit (TDLU) subtypes; these changes were then associated with all transcriptomic changes. Estrogen altered the expression of ~20% of all genes that mostly associated with mitosis, whereas PRL stimulated elements of fatty acid metabolism and an inflammatory response. Several outcomes, including increased pSTAT5, highlighted the ability of E to enhance PRL action. Regression of transcriptomic changes against several MG phenotypes revealed 1,669 genes correlated with proliferation, among which 29 were E-inducible. Additional gene expression signatures were associated with TDLU formation and the frequency of ESR1 or PGR. These data provide a link between the hormone-regulated genome and phenome of the MG in a species having a complex histoarchitecture like that in the human breast, and highlight an underexplored synergy between the actions of E and PRL during MG development.
description: Funding U.S. Department of Agriculture, Award: 2003-35206-12849 U.S. Department of Agriculture, Award: 2004-35206-14140 Vermont Genetics Network Department of Defense Breast Cancer Research Program, Award: W81XWH-04-1-0522 University of Vermont Cancer Center Genome Center, University of California, Davis University of Vermont Agricultural Experiment Station University of California, Davis Agricultural Experiment Station U.S. Department of Agriculture, Award: 2015-06351
DOI: 10.5281/zenodo.5808471
title: Supplementary Data for: Unique Transcriptomic Changes Underlie Hormonal Interactions During Mammary Histomorphogenesis in Female Pigs

description: Successful lactation and the risk for developing breast cancer depend on growth and differentiation of the mammary gland (MG) epithelium that is regulated by ovarian steroids (17beta-estradiol [E] and progesterone [P]) and pituitary-derived prolactin (PRL). Given that the MG of pigs share histomorphogenic features present in the normal human breast, we sought to define the transcriptional responses within the MG of pigs following exposure to all combinations of these hormones. Hormone-ablated female pigs were administered combinations of E, medroxyprogesterone 17-acetate (source of P), and either haloperidol (to induce PRL) or 2-bromo-a-ergocryptine. We subsequently monitored phenotypic changes in the MG including mitosis, receptors for E and P (ESR1 and PGR), level of phosphorylated STAT5 (pSTAT5), and the frequency of terminal ductal lobular unit (TDLU) subtypes; these changes were then associated with all transcriptomic changes. Estrogen altered the expression of ~20% of all genes that mostly associated with mitosis, whereas PRL stimulated elements of fatty acid metabolism and an inflammatory response. Several outcomes, including increased pSTAT5, highlighted the ability of E to enhance PRL action. Regression of transcriptomic changes against several MG phenotypes revealed 1,669 genes correlated with proliferation, among which 29 were E-inducible. Additional gene expression signatures were associated with TDLU formation and the frequency of ESR1 or PGR. These data provide a link between the hormone-regulated genome and phenome of the MG in a species having a complex histoarchitecture like that in the human breast, and highlight an underexplored synergy between the actions of E and PRL during MG development.
description: Funding U.S. Department of Agriculture, Award: 2003-35206-12849 U.S. Department of Agriculture, Award: 2004-35206-14140 Vermont Genetics Network Department of Defense Breast Cancer Research Program, Award: W81XWH-04-1-0522 University of Vermont Cancer Center Genome Center, University of California, Davis University of Vermont Agricultural Experiment Station University of California, Davis Agricultural Experiment Station U.S. Department of Agriculture, Award: 2015-06351
DOI: 10.5281/zenodo.5807483
title: 1.20 Å crystal structure of Vibrio alkaline phosphatase in 1.0 M NaCl, remote data

description: Diffraction data collection frames and processing files for the crystal structure of <em>Vibrio</em> alkaline phosphatase in 1.0 M NaCl; XDS_ASCII.HKL is the final reduced reflection file. Data were collected with an X-ray wavelength of 0.976 Å at the P14 beamline at the DESY-PETRA III synchrotron in Hamburg, Germany.