cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14345774.v1
title: Supplementary Material for: Peer Review of Paediatric Endocrine Services in the UK: A Template for Quality and Service Improvement

description: <b><i>Background:</i></b> Independent peer review of healthcare services can complement existing internal-, institutional-, and national-level regulatory mechanisms aimed at improving quality of healthcare. However, this has not been reported for paediatric endocrinology services in the UK. We aimed to test feasibility and acceptability through a first cycle of a national peer review of paediatric endocrine services. <b><i>Methods:</i></b> Tertiary centres in paediatric endocrinology across the UK were assessed against 54 quality standards, developed by the British Society for Paediatric Endocrinology and Diabetes (BSPED) in five domains of healthcare by a team comprising paediatric endocrinologists and specialist nurses. The evaluation was supported by a self-assessment. A post-peer-review questionnaire was used as feedback. <b><i>Results:</i></b> All 22 centres in the UK underwent independent peer review between 2011 and 2017. Each served a median population of 2.6 million (range 1–8 million) and offered 1,872 (range 779–6,738) outpatient consultations annually. A total of 43 (range 30–49) standards were met in combined evaluation of all centres. Variance of adherence for essential standards ranged from 52 to 97% at individual centres with 90% adherence demonstrated by 32% of centres. Post-review feedback showed 20/22 (95%) validating the utility of the peer review. <b><i>Conclusions:</i></b> The BSPED peer review of all UK centres providing paediatric endocrine services is shown to be feasible and provides a quality benchmark for replication by national services.
DOI: 10.6084/m9.figshare.19965196.v1
title: Economic growth without welfare. The case of the impact of commodities on the Colombian economy

description: ABSTRACT Economic growth is not always related to social welfare. Therefore, this paper takes the case of the Colombian economy that has a strong dependence on commodity exploitation to identify the impacts of different commodities such as oil, coffee, coal, and nickel over economic variables. The results show that the increase in prices of commodities generates significant impacts on economic activity in variables such as GDP and investment. Also, there are no significant impacts on variables that provide welfare to individuals as total consumption or the unemployment rate.
DOI: 10.6084/m9.figshare.12698765.v1
title: Bland Altman data.dta

description: Data were used to check for agreement between the two measurements, that is self reports and accelerometer MVPA
DOI: 10.6084/m9.figshare.25032113.v1
title: SISSO files

description: Specific structural motifs in inorganic solids are often related to target physical properties. For many classes of solids, such as Zintl phases and polar intermetallics, the crystal structures are diverse and not easy to predict. Various antimonides that are potential thermoelectric materials were proposed to be synthesizable based on their estimated formation energies. Their structures were broadly classified as clathrate, channel, layered, or network through a machine learning model trained on existing ternary phases and features based on elemental properties using the sure independence screening and sparsifying operator algorithm.
DOI: 10.6084/m9.figshare.8171147.v1
title: S1 Table. Primers and thermal cycling conditions used to amplify each barcoding region for insects, macro-fungi, and plants.

description: Primers and thermal cycling conditions used to amplify each barcoding region for insects, macro-fungi, and plants. <br>
DOI: 10.6084/m9.figshare.10101377.v2
title: Dataset on the effect of vancomycin on the gut microbiome in type 1 diabetic mice using a metagenomic analysis

description: Here we treated streptozotocin-induced diabetic mice with vancomycin (Vanc) to alter the gut microbiota. In order to examine the gut microbial changes, we used a metagenomic analysis to determine the gut microbiome in caecum contents of normal control (CON), type 1 diabetic (T1D), and vancomycin-treated type 1 diabetic (T1DV) mice at 7 weeks. This study is submitted to Microbiome. Hong Zheng, Pengtao Xu, Qiaoying Jiang, Qingqing Xu, Yafei Zheng, Junjie Yan, Hui Ji, Jie Ning<sup>1</sup>, Xi Zhang, Chen Li, Limin Zhang, Yuping Li, Xiaokui Li, Weihong Song, and Hongchang Gao. (2021). Depletion of acetate-producing bacteria from the gut microbiota facilitates cognitive impairment through the gut-brain neural mechanism in diabetic mice.
DOI: 10.6084/m9.figshare.24559852.v3
title: Czech Butterfly Barcoding

description: Czech Butterfly Barcoding DatasetsThis dataset consists of separate nexus files of COI sequences for each butterfly species covered in the Czech Republic Butterfly barcoding scheme.Nexus files include newly generated sequences from the Czech Republic, and database data from BOLD (https://v3.boldsystems.org/) (Ratnasingham & Hebert 2007) (downloaded on 12 October 2022) for each species across its range, which were georeferenced and sequenced from the 5' end. We manually aligned samples with different length than 658 bp.We used an R script CZbar.R for data handling. It is a script for quick extracting of already downloaded data from BOLD. The data should be in a table containing all data and also sequences, saved as combined TSV file. Save the script, open under R, install the dependencies and run following the instructions directly in the script.We further used the script BAPS analyses (via rhierbaps R package, Tonkin-Hill et al. 2018), and for generating Nexus inputs for POPART (Leigh & Bryant 2015; available from https://popart.maths.otago.ac.nz/). Both results of rhierbaps and POPART were checked visually and the dataset was cleaned to omit database samples which were either shorter than 500 bp, or potentially misidentified (dissimilarity of sequences represented by long branches in haplotype networks was evaluated using the BLAST algorithm, Altschul et al. 1990, in the NCBI database). After such cleaning, the final dataset (samplelist_metadata2.xlxs) and final nexus files, presented here, were produced.<br>Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1990). Basic local alignment search tool. J. Mol. Biol., 215, 403–410.Leigh, J.W. & Bryant, D. (2015). popart: full-feature software for haplotype network construction. Methods Ecol. Evol., 6, 1110–1116.Ratnasingham, S. & Hebert, P.D.N. (2007). bold: The Barcode of Life Data System (http://www.barcodinglife.org). Mol Ecol. Notes, 7, 355–364.Tonkin-Hill, G., Lees, J.A., Bentley, S.D., Frost, S.D.W. & Corander, J. (2018). RhierBAPS: An R implementation of the population clustering algorithm hierBAPS. Wellcome Open Res., 3, 93.
DOI: 10.6084/m9.figshare.9563897.v1
title: simulation and experimental data.xlsx

description: Bus Voltage Stabilization Control of Photovoltaic DC Microgrid Based on Fuzzy-PI Dual-mode Controller
DOI: 10.6084/m9.figshare.17080946.v6
title: Static Test Flakiness Prediction: How Far Can We Go?

description: This item contains the replication package related to the paper "Static Test Flakiness Prediction: How Far Can We Go?"<br>
DOI: 10.6084/m9.figshare.28787639.v1
title: cGN_day10_spleen_luekocyte_scRNA-seq

description: A cGN model was induced in WT B6 mice and spleen CD3+ cells and CD3- cells were sorted for scRNA-seq analysis.Details can be found in "Type I interferon drives T cell cytotoxicity by upregulation of interferon regulatory factor 7 in autoimmune kidney diseases in mice" by Wang et al. published in Nature Communications (2025).
DOI: 10.6084/m9.figshare.4595635
title: A juvenile specimen of <i>Anteosaurus magnificus</i> Watson, 1921 (Therapsida: Dinocephalia) from the South African Karoo, and its implications for understanding dinocephalian ontogeny

description: Anteosaurid dinocephalians were the apex terrestrial predators of the latter part of the Guadalupian (middle Permian) and became extinct at the end of that epoch. The group was relatively diverse in Russia, but represented by only two genera, <i>Australosyodon</i> and <i>Anteosaurus</i>, in the Karoo rocks of South Africa. A newly discovered skull of <i>Anteosaurus magnificus</i> from the Abrahamskraal Formation is unique among specimens of this taxon in having most of the individual cranial bones disarticulated, permitting accurate delimitation of cranial sutures for the first time. The relatively large orbits and unfused nature of the cranial sutures suggest juvenile status for the specimen. A computer-aided 3D reconstruction of the skull, and comparison with 11 additional individuals, enabled an allometric study of cranial growth in the species. Positive allometry for four of the measurements suggests rapid growth in the temporal region, and a significant difference in the development of the postorbital bar and suborbital bar between juveniles and adults. Pachyostosis was an important process in the cranial ontogeny of <i>Anteosaurus</i>, significantly modifying the skull roof of adults. This condition is more obvious in large individuals of the species, but it is recognized that variation may also be independent of growth and could be related to sexual dimorphism. Growth of the skull in <i>Anteosaurus</i> shows similar morphological trends to that of the Russian <i>Titanophoneus</i> and the Chinese <i>Sinophoneus</i>. The overall morphology of the juvenile <i>Anteosaurus</i> is clearly reminiscent of the adult skull of the Russian medium-sized <i>Syodon</i>, a condition that is more likely a result of similar skull sizes and the lack of strong pachyostosis in adult <i>Syodon</i>.
DOI: 10.6084/m9.figshare.24265765.v1
title: Broadband characterization of the spectral responsivity of thermoelectrically-coupled nanoantennas

description: The original data is stored in the folder named "data," and all plots in the manuscript can be generated using the file "Generate_All_Figures.m."
DOI: 10.6084/m9.figshare.14222201.v1
title: Supplementary Material for: Soluble ST2 and Galectin-3 as Predictors of Chronic Kidney Disease Progression and Outcomes

description: <b><i>Background:</i></b> Soluble suppression of tumorigenicity-2 (sST2) and galectin-3, novel biomarkers of heart failure and cardiovascular stress, predict cardiovascular events (CVEs) and mortality. However, their relationship with kidney function and adverse outcomes in CKD are uncertain. The purpose of this study was to determine the association between sST2 and galectin-3 with CKD progression and adverse clinical outcomes. <b><i>Methods:</i></b> We measured baseline sST2 and galectin-3 levels in the CKD patient cohort at our institution between October 2013 and December 2014. The primary outcome was CKD progression (kidney failure with replacement therapy or ≥50% reduction in estimated glomerular filtration rate from the baseline). The secondary outcome was the composite of CVEs and death. We used a Cox proportional hazards model to evaluate the associations between sST2 and galectin-3 levels, with kidney and clinical outcomes. <b><i>Results:</i></b> In total, 352 patients were enrolled in this study. At baseline, log sST2 and galectin-3 were directly associated with the serum creatinine (Cr) and urine protein-to-Cr ratio. Cox regression analysis showed that the baseline log sST2 level independently predicted CKD progression and composite outcome after adjustment for age, sex, smoking, diabetes mellitus, hypertension, cardiovascular disease, renin-angiotensin system blocker, calcium channel blocker, β-blocker, diuretics, antiplatelet agents, anemia, and hypoalbuminemia. The baseline log galectin-3 level was independently associated with CKD progression, but not with the composite outcome after adjustment for confounding variables. <b><i>Conclusions:</i></b> Elevated levels of sST2 and galectin-3 are significantly associated with CKD progression, but only sST2 is associated with adverse clinical outcomes.
DOI: 10.6084/m9.figshare.19697239.v1
title: Molecular dating analysis files

description: Parameters files and results files of molecular dating analysis of <em>Trichosurus vulpecula </em>using Beast, Beauti, Tracer and TreeAnnotator softwars. <br> <br> .XML : Paramaters files .log : Beast run logs .trees : Beast run set of trees .tre : maximum clade credibility tree <br> <br>
DOI: 10.6084/m9.figshare.19822435.v3
title: Data tables (S). Influence of Serum Aldosterone on Left Ventricular Structure and Diastolic Function in Essential Hypertension

description: Online-only data supplement. Influence of Serum Aldosterone on Left Ventricular Structure and Diastolic Function in Essential Hypertension
DOI: 10.6084/m9.figshare.28613369.v1
title: Supplementary Material for: Development and validation of a risk prediction model for citrate accumulation in patients undergoing continuous renal replacement therapy with regional citrate anticoagulation

description: Introduction: Regional citrate anticoagulation (RCA) is now recommended as the first choice of anticoagulation for continuous renal replacement therapy (CRRT). However, impaired citrate metabolism can lead to citrate accumulation (CA), resulting in severe metabolic acidosis and hypocalcemia, which poses a challenge for clinicians when making decision about the use of RCA.
Methods: In this retrospective cohort study performed in West China Hospital of Sichuan University, we evaluated patients who underwent RCA-based CRRT from 2021 to 2023. Participants were randomly allocated into training and validation groups at a 7:3 ratio. In the training group, significant risk factors for CA were determined by a binary logistic regression analysis and established a risk prediction model, the validation group validated and evaluated the model. A nomogram was constructed to visualize the prediction model, and calibration and receiver operating characteristic (ROC) curves were used to evaluate the prediction accuracy, and decision curve analysis (DCA) was used to evaluate the clinical effectiveness. 
Results: Of the 1,259 patients with RCA-CRRT, 882 were randomly stratified into the training group and 377 into the validation group. CA was reported in 16.2% and 16.7%, respectively. We developed and validated a nomogram to predict the risk of CA, incorporating significant factors including male, age, body surface area (BSA), mean hourly citrate dosage, systolic blood pressure (SBP), lactate, total bilirubin (TBIL) and international normalized ratio (INR). The area under the ROC curve of the nomogram was 0.760 (95% CI, 0.737-0.765) and 0.752 (95% CI, 0.744-0.787) in both groups. The calibration curve further confirmed its effective discrimination and calibration abilities. DCA analysis emphasized its clinical utility when the CA probability threshold for intervention is between 11% and 76%.
Conclusion: We developed and validated a useful prediction model for CA in critically ill patients who underwent RCA-CRRT, assisting clinicians in identifying high-risk individuals.
DOI: 10.6084/m9.figshare.24849258.v1
title: Langenhoven_&_Jordaan_Minimal_Data_set_2023_12_18.sav

description: Correctional centres tend to negatively impact the mental health of incarcerated offenders, especially when offenders are unable to cope with or adjust to the correctional environment. Internationally, studies have shown a significantly higher prevalence of mental health disorders such as depression among incarcerated offenders compared to the general population. Mental health disorders increase the likelihood of institutional misconduct, suicidal ideation and recidivism among offenders. This study aimed to determine the individual and collective contributions of coping, adjustment, perceived social support, and age as possible predictors of depressed mood amongst adult male maximum-security incarcerated offenders. The study included 418 South African male incarcerated offenders, sampled using convenience sampling. The study investigated the relationship between the predictor and outcome variables using a quantitative, cross-sectional correlational design. Hierarchical regression analysis indicated that internal adjustment and physical adjustment were the only individual predictor variables that statistically and practically predicted depressed mood. This study’s findings could aid in understanding the role of adjustment in developing and maintaining depressive mood states in the correctional environment.
DOI: 10.48420/21335622.v3
title: Interactive information dashboards user performance, low-level interaction data and interaction patterns.

description: A study on four interaction and information presentation dashboard problems: 1. information overload, 2. inappropriate data order and grouping 3. ineffective data presentation 4. misalignment in visual literacy expectations <br> Each dashboard had two types: problematic and adapted. Then each type had two tasks. <br> <strong>File 1 (dependent and independent variables):</strong> 63 participants completed the experiment, so for each user, we have user graph literacy (0-4), effectiveness(0 or 1 for each task), efficiency (completion time in minutes for each task), perceived performance (0-20 for each task) and perceived cognitive demand (0-20 for each task). <br> <strong>File 2 (interaction data):</strong> 50 participants interacted with the dashboards while their low-level inttraction data was being collected using UCIVIT tool. The zip file contains 50 JSON files for each participant on eight dashboards. <br> <strong>File 3 (interaction patterns):</strong> Using VMSP sequential pattern mining algorithm, we mined the low-level interaction data to find the patterns of behaviour exhibited by the participants. This file explains the benchmarking used to arrive at the parameters used and lists all the patterns found on each dashboard. It also further explains all the interpretations of events on all elements.
DOI: 10.6084/m9.figshare.20330481.v1
title: Single-cell chromatin landscapes of mouse skin development

description: Single-cell chromatin landscapes of mouse skin development
DOI: 10.6084/m9.figshare.28794548.v1
title: <b>Soil Nitrogen Drives Soil Organic Carbon Stabilization by promoting Microbial Cooperation under salt environment</b>

description: The dataset was derived from different plant soils in the Yellow River Delta and a global-scale meta-analysis. Includes data on SOC, different carbon components, microbial properties, iron oxides, microbial residues, etc. The overall objective of this study is to provide empirical evidence for the combined effects of microbial interactions on SOC sequestration and stability, as well as the mechanisms by which environmental factors regulate the relationship.<br>
DOI: 10.6084/m9.figshare.12462479.v1
title: Data from: Targeted sampling successfully detects the cryptic and declining arboreal marsupial (Phascogale pirata) in northern Australia

description: Contains all data necessary to duplicate the analyses described in Geyle et al<i>.</i> 2020. Includes a key to column headings and a description of variables.<br>The threatened northern brush-tailed phascogale (<i>Phascogale pirata</i>) is one of the most poorly known mammals in Australia. While the few available records indicate a decline in its distribution and abundance, it has not previously been subject to intensive targeted survey. Here, we trialled a specifically tailored methodology for detection of <i>P. pirata</i>, with the aim of informing ongoing survey and monitoring of this species. We deployed 50 motion-sensor cameras (spaced closely together in a grid 500 × 1000 m) on Melville Island (Northern Territory, Australia), between June 2018 and May 2019. Cameras were baited and secured to trees ~3 m above the ground on a bracket facing the trunk. We selected for large (&gt;30 cm diameter at breast height [DBH]) trunks of the dominant tree species (<i>Eucalyptus miniata</i>, <i>E. tetrodonta</i> and <i>Corymbia nesophila</i>). We detected <i>P. pirata</i> 16 times on eight cameras over the duration of the study, finding that detection was most likely on large (DBH &gt;41.5 cm) <i>E. tetrodonta</i> trees during the wet season. Our results indicate that survey effort for this species should be seasonally targeted and focussed on large trees. However, the efficacy of additional methods (nest boxes, Elliott traps) and a comparison between detections on arboreal versus ground-based cameras requires further investigation. We highlight the importance of conducting additional work on this species, as little is known about its ecology, population trends and threats, making it difficult to assess its conservation status. Without more targeted work, <i>P. pirata</i> is at risk of slipping into extinction unnoticed.
DOI: 10.6084/m9.figshare.14318311.v1
title: Mascarpone cheese from sheep's milk - a new option for the consumer

description: Abstract Dairy sheep farming, as well as processing of dairy products, are consolidated activities in Brazil, mainly for the production of cheese and yogurt. Considering that sheep milk has high levels of fat and the need for product diversification, this work aimed to develop a new formulation of mascarpone cheese using sheep's milk, since the basis for this type of cheese is milk cream. The quality of this derivative was monitored for 120 days of storage under refrigeration to evaluate microorganisms that indicate quality and safety, in addition to physical-chemical parameters. The ovine mascarpone cheese showed adequate microbiological results, in accordance with the Brazilian legislation, in addition to high total fat, fat content in the dry extract and protein. The physical-chemical and microbiological parameters remained adequate throughout the storage period under maximum temperatures below 7 °C. Mascarpone cheese was classified by its moisture and fat content in the dry extract as medium moisture or semi-hard cheese and as extra fat or double cream cheese, respectively. The processing, packaging and storage conditions proved to be adequate and provided product stability. In this study a new sheep milk derivative was successfully developed, characterized, tested and proved to be adequate for the market.
DOI: 10.6084/m9.figshare.14789028.v1
title: K-DPP Depression and Anxiety analyses

description: The datasets and codes are for the paper on the associations between depression and anxiety with incident diabetes using the Kerala Diabetes Prevention Program (K-DPP) datasets.