cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5u6hwj
title: Occurrence Download

description: A dataset containing 524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-116.85486 9.57727,-80.38171 12.02513,-81.36084 27.69145,-114.89658 24.75402,-116.85486 9.57727))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Terminalia amazonica"
 ]
}

 The dataset includes 524 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002300-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.4b8gtht8w
title: Data from: Small coastal streams – critical reservoirs of genetic diversity for brown trout in the face of increasing anthropogenic stressors

description: We used microsatellite markers to investigate levels and structuring of
 genetic diversity in trout (Salmo trutta L.) sampled from 16 rivers along
 the south coast of Cornwall in southwest England. This region is
 characterised by many small coastal streams with a few larger catchments.
 At a regional level, genetic structuring of contemporary populations has
 been influenced by a combination of events, including the last Ice Age and
 also more recent human activities over the last millennium. All
 populations are shown to have gone through strong genetic bottlenecks,
 coinciding with increased exploitation of mineral resources within
 catchments, beginning during the Medieval period. At more local levels,
 contemporary human-induced habitat fragmentation, such as weir and culvert
 construction, has disproportionally affected trout populations in the
 smaller catchments within the study area. However, where small catchments
 are relatively unaffected by such activities, they can host trout
 populations with diversity levels comparable to those found in larger
 rivers in the region. We also predict significant future loses of
 diversity and heterozygosity in the trout populations inhabiting small,
 isolated catchments. Our study highlights how multiple factors, especially
 the activity of humans, have and continue to affect the levels and
 structuring of genetic diversity in trout over long timescales.
description: 1174 fish from 26 southern Cornish (UK) streams and rivers were
 screened for variation using 18 sets of microsatellite primers resulting
 in the amplification of 19 loci. Primers for locus One102 amplify two loci
 with non-overlapping size ranges and therefore could be scored
 independently. Foward primers were labelled with flourescent tags and PCR
 products were separated on a Beckman-Coulter CEQ8000 automatic DNA
 sequencer and scored using it's associated fragment analysis
 software.
description: Data file is in GenAlEx input format. Alleles are scored as
 fragment lengths and missing data is scored as zero.
DOI: 10.5061/dryad.tb2rbnzx9
title: Latitudinal cline of larval growth rate and its proximate mechanisms in a rhinoceros beetle

description: 1. Juvenile growth rate is a key life-history trait with a major effect on
 various fitness components. Duration of the growing season changes with
 latitude, often resulting in latitudinal variations in growth rate. While
 many studies have shown a latitudinal cline of growth rate, most have used
 linear measurements of growth rate without considering the nonlinear
 nature of growth trajectories. Furthermore, elucidation of the proximate
 mechanisms causing increased growth rates would provide a fundamental
 understanding of the evolutionary process of the latitudinal cline of
 growth rates, which are largely unknown. 2. We used common garden
 experiments to examine the latitudinal variation of growth rate. We
 analysed the larval growth curve of 14 populations of the univoltine
 Japanese rhinoceros beetle Trypoxylus dichotomus (Coleoptera:
 Scarabaeidae) found along a 2000 km latitudinal gradient. In order to
 clarify the mechanisms responsible for the latitudinal cline of growth
 rate we compared food consumption and growth efficiency (i.e. the capacity
 to convert food into biomass) using three populations at high, middle, and
 low latitudes. 3. There was a strong positive correlation between growth
 rate and latitude and a strong negative correlation between age at the
 inflexion point of the growth curve and latitude, indicating that larvae
 from northern populations grew more rapidly and reached the inflexion
 point earlier than those from southern populations. 4. The food intake
 increased linearly towards higher latitude. The growth efficiency of
 larvae from middle latitude was greater than that of larvae from low
 latitude, but there was no difference in the growth efficiency between
 high- and middle-latitude populations. 5. The increased growth rate at
 higher latitude is probably a local adaptation to complete development and
 growth during the short growth season. The rapid growth rate at higher
 latitudes could be explained by both the increased food consumption and
 the growth efficiency. However, the growth efficiency is probably
 maximised in the middle-latitude population, suggesting that some
 physiological costs prevent further increase in growth efficiency at
 higher latitudes. This study provides compelling evidence for latitudinal
 cline of juvenile growth rate and disentangles the contributions of food
 intake and growth efficiency to the cline.
DOI: 10.5061/dryad.wpzgmsbhr
title: Data from: Sexual selection and population divergence III. Interspecific and intraspecific variation in mating signals

description: A major challenge for studying the role of sexual selection in divergence
 and speciation is understanding the relative influence of different
 sexually-selected signals on those processes in both intra and
 interspecific contexts. Different signals may be more or less susceptible
 to co-option for species identification depending on the balance of sexual
 and ecological selection acting upon them. To examine this, we tested
 three predictions to explain geographic variation in long- vs. short-range
 sexual signals across a 3,500+ km transect of two related Australian field
 cricket species (Teleogryllus spp.): 1) selection for species recognition,
 2) environmental adaptation, and 3) stochastic divergence. We measured
 male calling song and male and female cuticular hydrocarbons (CHCs) in
 offspring derived from wild populations, reared under common garden
 conditions. Song clearly differentiated the species and no hybrids were
 observed suggesting that hybridisation is rare or absent. Spatial
 variation in song was not predicted by geography, genetics or climatic
 factors in either species. In contrast, CHC divergence was strongly
 associated with an environmental gradient supporting the idea that the
 climatic environment selects more directly upon these chemical signals. In
 light of recently advocated models of diversification via ecological
 selection on secondary sexual traits, the different environmental
 associations we found for song and CHCs suggest that the impact of
 ecological selection on population divergence, and how that influences
 speciation, might be different for acoustic vs. chemical signals.
DOI: 10.5061/dryad.s4mw6m945
title: High variation in last male sperm precedence and genital morphology in the emerald damselfly Lestes sponsa

description: In organisms where individuals mate multiply, knowledge on the proportion
 of offspring sired by the last male to mate (P2) under field conditions is
 important for a thorough understanding of how sexual selection works in
 nature. In many insect groups, pronounced intraspecific variation in P2 is
 commonplace. Interestingly, however, in stark contrast to these
 observations, compilation of P2 data in dragonflies and damselflies
 (Odonata) indicate that a high P2, seldom below 0.95, is a feature of this
 taxon. Here we used double digest restriction-site associated DNA
 sequencing (ddRADseq) to generate a panel of single nucleotide
 polymorphisms (SNPs) with which we could determine paternity and estimate
 values of P2 in the offspring of 19 field-collected pairs of the emerald
 damselfly Lestes sponsa. We also estimated the relationship between P2 and
 male genital shape of 16 males using geometric morphometric analysis. P2
 was variable (range=0.0-1.0; mean=0.5), and there was a marginally
 non-significant (P=0.069) relationship between genital shape and P2,
 suggesting that male with a high P2 had an aedeagus with a broader tip. We
 suggest that the high P2-values reported in past studies in Odonata is
 partly due to the methods used to infer paternity. Use of SNPs to
 determine patterns of paternity and P2 in odonates is needed for a better
 appraisal of fitness in odonates, and would open many future avenues for
 use of odonates as models of sexual selection.
description: Genotyping by double digest restriction associated DNA sequencing
 (ddRADseq). Libraries were created by digesting DNA with EcoRI-HF and
 MseI, after which adaptors with individual tags were ligated with T4 DNA
 ligase, and PCR with Q5 DNA polymerase (New England Biolabs,
 Massachusetts, USA). Samples were then pooled and size selected on agarose
 gels. Libraries were sequenced on a single lane of an Illumina HiSeq2500
 flow-cell (125 bp paired end) to generate 180 M read pairs. Single
 nucleotide polymorphisms (SNPs) were called using STACKS v.2.2 denovo-map
 pipeline. We set the number of mismatches allowed between stacks within
 individuals (-M) and between individuals (-n) to 2. Final data
 were filtered in the populations program of STACKS to retain only the
 first SNP of each RAD-tag that could be found in 80% of all the
 individuals at a minor allele frequency ≥0.05. 
description: Data in DRYAD are the raw data (SNPs called from ddRAD
 genotyping) in VCF format, which were used to determine parentage in the
 emerald damselfly. Note that these data were filtered as described in the
 manuscript before conducting paternity assignment. Gra
 / Gni indicate the population m / f indicate the
 parent’s sex (male / female) o indicates that these
 individuals were offspring   For example, Gra03m and
 Gra03f would be a pair, who produced (may have sired in the case of the
 male) the clutch of offspring oGra_03_1, oGra_03_2, oGra_03_3 …
 etc.
DOI: 10.5061/dryad.2547d7wnc
title: Alu-Mediated MEN1 Gene Deletion and Loss of Heterozygosity in a Patient with Multiple Endocrine Neoplasia Type 1

description: Multiple endocrine neoplasia type 1 (MEN1) is an autosomal dominant
 disorder caused by mutations of the tumor suppressor gene MEN1. Most of
 the germline MEN1 gene mutations have been small mutations, and the whole
 gene deletion is rarely observed. In the present study, we revealed Alu
 retrotransposon-mediated de novo germline deletion of the whole MEN1 gene
 and somatic copy-neutral loss of heterozygosity (LOH) in a patient with
 MEN1. The patient is a 39-year-old woman who was referred to our
 department for the management of prolactinoma. She was also diagnosed with
 primary hyperparathyroidism and suspected of MEN1. Although nucleotide
 sequencing did not detect any MEN1 gene mutations, multiplex
 ligation-dependent probe amplification (MLPA) revealed a large germline
 deletion of the MEN1 gene. Subsequent quantitative polymerase chain
 reaction (qPCR)-based copy number mapping showed a monoallelic loss of
 approximately 18.5-kilobase region containing the whole MEN1 gene.
 Intriguingly, the two breakpoints were flanked by Alu repetitive elements,
 suggesting the contribution of Alu/Alu-mediated rearrangements to the
 whole MEN1 gene deletion. Furthermore, copy number mapping
 using MLPA and qPCR in combination with single nucleotide
 polymorphism analysis revealed copy-neutral LOH as a somatic event for
 parathyroid tumorigenesis. In conclusion, copy number mapping revealed a
 novel combination of Alu/Alu-mediated de novo germline deletion of the
 MEN1 gene and somatic copy-neutral LOH as a cytogenetic basis for the MEN1
 pathogenesis. Moreover, subsequent in silico analysis highlighted the
 possible predisposition of the MEN1 gene to Alu retrotransposon-mediated
 genomic deletion.
description: <strong>Supplementary
 Figure legends</strong> Supplementary Figure 1. Multiplex
 ligation-dependent probe amplification results of the patient’s leukocytes
 (A), her father’s leukocytes (B), her mother’s leukocytes (C), the right
 upper parathyroid gland of the patient (D), and the left lower parathyroid
 gland of the patient (E). Supplementary Figure 2.
 Polymerase chain reaction (PCR) results of the patient’s
 leukocytes.<br> (A) Target loci of the primers used. Each primer
 pair was given identification number #1–7.<br> (B) PCR results used
 to assess the maximum size of amplicons which can be generated from a
 non-deleted allele of leukocytes of the patient. It seemed that PCR
 amplicons of #3, #4, and #5 were too long to be amplified.
DOI: 10.82294/dvnawprku
title: Observaciones semiestructuradas. Territorio: Cundinamarca. Eje medular: Experiencia estética. Sector: Educación. Año: 2025

description: La experiencia estética se concibe como un proceso dinámico y complejo que involucra tanto la cognición como la emoción, manifestándose como una experiencia de un objeto que posee características estéticas. Implica la extracción de significado del entorno y se vincula intrínsecamente con la percepción detallada de las cualidades sensoriales de una obra. Es considerada un activador fundamental de los procesos de aprendizaje y un componente vital para una vida plena (D’Olimpio, 2022; Bara, Binney, Ward, & Ramsey; Manera, 2022)
DOI: 10.15468/dl.e2qrn9
title: Occurrence Download

description: A dataset containing 12483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nototodarus sloanii",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 12483 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002299-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.z8w9ghx85
title: Least-cost habitat linkages for American black bear, Rafinesque's big-eared bat, and timber rattlesnake.

description: This data set contains 3 shapefiles and associated files that map
 linkages, which are least-cost paths between adjacent habitat cores for
 three wildlife species in the Southeastern U.S. The species are: the
 American black bear (Ursus americanus), Rafinesque's big-eared bat
 (Corynorhinus rafinesquii), and Timber rattlesnake (Crotalus horridus). We
 mapped habitat cores based on c. 2006 land cover, then used LinkageMapper
 software to identify least-cost paths between them, and buffered the
 least-cost paths by 2.5 km using ArcGIS, for a total width of 5 km. The
 buffered least-cost paths are the linkages provided here. The attribute
 tables for these shapefiles contain fields that describe the importance of
 each linkage to the overall habitat connectivity network, contemporary and
 future average modeled habitat suitability within the linkage, change in
 average proportion suitable, percent of urban land within the linkage,
 percent of linkage that is protected for conservation, and categorical
 values for climate threat, whether the linkage was designated as highly
 important, protection status, and future urbanization threat.
description: We mapped habitat cores based on c. 2006 land cover, then used
 LinkageMapper software to identify least-cost paths between them, and
 buffered the least-cost paths by 2.5 km using ArcGIS, for a total width of
 5 km. The buffered least-cost paths are the linkages provided here. One
 input data set for defining habitat cores and mapping least cost paths was
 an ensemble habitat suitability model for each species. Those data are
 posted here: https://doi.org/10.5061/dryad.r7sqv9s8v For more information about the purpose of the data and methods used to create them, see:<br> Costanza et al. Preserving connectivity under climate and land-use change: no one-size-fits-all approach for focal species in similar habitats, Biological Conservation.
description: See details in the readme file,
 linkages_bear_bat_snake_readme.txt, accompanying this data set. See also
 the metadata file (.xml) associated with each of the shapefiles included
 here.
DOI: 10.5281/zenodo.18395153
title: PARASITIC DISEASES: ETIOLOGY, GLOBAL DISTRIBUTION, AND DISTINCTIVE DIAGNOSTIC FEATURES
DOI: 10.5281/zenodo.18395152
title: PARASITIC DISEASES: ETIOLOGY, GLOBAL DISTRIBUTION, AND DISTINCTIVE DIAGNOSTIC FEATURES
DOI: 10.5061/dryad.s4mw6m946
title: Extra-pair copulations can insure female blue tits against male infertility

description: Mating outside the pair-bond occurs frequently in socially monogamous
 birds, but the benefits that females gain from this behaviour remain
 debated. One hypothesis is that females engage in extra-pair copulations
 (EPCs) to ensure that their clutch is fertilised in case their own mate is
 infertile, but evidence for this idea is scarce. We report on a case of an
 infertile male blue tit that bred in three successive years with three
 different females. In the first year, all eggs were sired by an extra-pair
 male whereas in the second year all eggs were unfertilised and contained
 no sperm. In the third year, the female produced two clutches that were
 fertilised by an extra-pair male, but - unlike ‘normal’ clutches - sperm
 numbers on the perivitelline membrane decreased rapidly over the laying
 sequence. Our findings show that blue tit females mated to an infertile
 male can escape reproductive failure by engaging in EPCs and support
 previous suggestions that EPCs in blue tits cease after the onset of egg
 laying.
description: see paper for methods
DOI: 10.5061/dryad.b5mkkwh98
title: Data from: Landscape simplification shapes pathogen prevalence in plant-pollinator networks

description: Species interaction networks, which play an important role in determining
 pathogen transmission and spread in ecological communities, can shift in
 response to agricultural landscape simplification. However, we know
 surprisingly little about how landscape simplification-driven changes in
 network structure impact epidemiological patterns. Here, we combine
 mathematical modeling and data from eleven bipartite plant-pollinator
 networks observed along a landscape simplification gradient to elucidate
 how changes in network structure shape disease dynamics. Our empirical
 data show that landscape simplification reduces pathogen prevalence in bee
 communities via increased diet breadth of the dominant species.
 Furthermore, our empirical data and theoretical model indicate that
 increased connectance reduces the likelihood of a disease outbreak and
 decreases variance in prevalence among bee species in the community,
 resulting in a dilution effect. Because infectious diseases are implicated
 in pollinator declines worldwide, a better understanding of how land use
 change impacts species interactions is therefore critical for conserving
 pollinator health.
DOI: 10.7280/d1qq36
title: Pursuit predation with intermittent locomotion in zebrafish

description: The control of a predator's locomotion is critical to its ability to
 capture prey. Flying animals adjust their heading continuously
 with control similar to guided missiles. However, many animals do
 not move with rapid continuous motion, but rather interrupt their progress
 with frequent pauses. To understand how such intermittent
 locomotion may be controlled during predation, we examined the kinematics
 of zebrafish (Danio rerio) as they pursued larval prey of the same
 species. Like many fishes, zebrafish move with discrete
 burst-and-coast swimming. We found that the change in heading and
 tail excursion during the burst phase was linearly related to the
 prey's bearing. These results suggest a strategy, which we
 call intermittent pure pursuit, that offers advantages in sensing and
 control. This control strategy is similar to perception and
 path-planning algorithms required in the design of some autonomous robots
 and may be common to a diversity of animals.
description: Predation experiments were performed with adult zebrafish predators (1.49 ± 0.43 cm, standard length, <i>n</i> = 38) and larval zebrafish prey (5-13 days-post-fertilization, <i>n</i> = 31). After 10 min in an experimental predation arena (figure S1), a divider between the fish was removed and recording proceeded until the predator either captured or otherwise ceased pursuing the prey. Using a high-speed video camera (500 frames s<sup>-1</sup>), we recorded the predator and prey from a dorsal perspective. Numerous (<i>n</i>=31) active chase sequences were recorded over variable duration.  The prey's centroid position and the predator's body midline were acquired through automated image processing of our recordings. This procedure, and all data analyses, were performed by custom programming within MATLAB (v.2014b, MathWorks, Natick, MA, USA, figure S2<i>c, </i>see manuscript for details). For each active chase, we identified every burst and coast phase from the rate of change in the predator's heading (figure S2<i>b</i>). To control for variation in chase duration, we randomly selected a single burst from each sequence for further analysis (see figure S3 for complete dataset). To assess the predator's pursuit strategy, we considered how the heading changes during tail beats were related to the tail excursion and the bearing (figure 1<i>a</i>) by geometric mean regression. 
description: The data plotted in Figure 1 of the manuscript and supplemental
 materials are contained within the Data_tidy directory. Running the Matlab
 file <em>zfPred_tidyData.m</em> will generate unformatted
 timeseries figures for each sequence and unformatted versions of
 the scatterplots in Fig. 1<em>c-d. </em>
DOI: 10.5061/dryad.612jm640s
title: Data from: Intraguild dynamics of understudied carnivores in a human-altered landscape

description: Mesocarnivores constitute a diverse and often abundant group of species,
 which are increasingly occupying higher trophic levels within multi-use
 landscapes. Yet, we know relatively little about their interactions with
 each other, especially in human-altered areas. Using camera trap data
 collected in a forestry concession in the Greater Gorongosa ecosystem of
 central Mozambique, we examined the spatiotemporal relationships and
 potential for intraguild competition among three understudied African
 carnivores: African civets (Civettictis civetta), bushy-tailed mongooses
 (Bdeogale crassicauda), and large-spotted genets (Genetta maculata). After
 accounting for habitat preferences and tolerance to anthropogenic factors,
 we found that African civets and bushy-tailed mongooses avoid each other
 spatially and temporally. Additionally, civets and mongooses were also
 both more likely to use sites farther away from human settlements,
 possibly decreasing the total available habitat for each species if,
 competition is driving this spatial partitioning. In contrast, we did not
 find evidence for spatial or temporal partitioning between large-spotted
 genets and African civets, but bushy-tailed mongooses altered their
 activity patterns where they co-occurred with genets. Our study
 contributes to scant ecological knowledge of these mesocarnivores and adds
 to our understanding of community dynamics in human-altered ecosystems.
description: To run the co-abundance R script in
 "twospp_abundmodel_EE", you will need the site_covs and the
 spp_occ75 excel files, and the TE_2spp text file in your working
 directory. To run the temporal overlap analyses, you
 only need the R script and temp_overlap_EcoEvo.RData file
 loaded.