cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5cr5np5n
title: MassIVE MSV000092938 - High-affinity Class II restricted B. pertussis epitopes recognized by murine and human memory CD4+ T cells are novel vaccine targets
title: The inability of approved whooping cough vaccines to prevent transmission is one explanation for increased Bordetella pertussis (Bp) infection and pertussis disease. While CD4+ T cells are critical for protection, the antigens they recognize are largely undefined. Immunoprecipitation of MHC Class II from antigen presenting cells loaded with heat-killed laboratory and clinical B. pertussis strains (HKBp), analyzed by high resolution mass spectrometry identified 793 MHC Class II presented peptides derived from 292 Bp proteins. A high affinity peptide library tested against T cells from HKBp immunized mice identified high avidity CD4+ T cells specific for 7 novel antigens. CD4+ tissue-resident memory T cells specific for 3 of these antigens were detected in the respiratory tract of mice following Bp challenge. Importantly, these antigens were also recognized by T cells of wPV immunized humans. Thus, Bp expresses immunogenic proteins that may elicit sustained CD4+ T cell responses and prevent Bp transmission and disease resurgence.
DOI: 10.6084/m9.figshare.24183276
title: Raw data of <b><i>Time-Restricted Feeding Alleviates Cognitive Impairment in Alzheimer's Disease: the Mediating Role of Gut Microbes and Propionic Acid</i></b>

description: Raw data of <b><i>Time-Restricted Feeding Alleviates Cognitive Impairment in Alzheimer's Disease: the Mediating Role of Gut Microbes and Propionic Acid</i></b>
DOI: 10.6084/m9.figshare.24183276.v1
title: Raw data of <b><i>Time-Restricted Feeding Alleviates Cognitive Impairment in Alzheimer's Disease: the Mediating Role of Gut Microbes and Propionic Acid</i></b>

description: Raw data of <b><i>Time-Restricted Feeding Alleviates Cognitive Impairment in Alzheimer's Disease: the Mediating Role of Gut Microbes and Propionic Acid</i></b>
DOI: 10.25345/c5804xw1t
title: MassIVE MSV000092939 - Superior Routes to mzML for Bruker timsTOF and SCIEX TripleTOF in Fast Photochemical Oxidation of Proteins
title: Many proteomics researchers are accustomed to a fairly common paradigm for identifying tandem mass spectra to peptides. They are accustomed to using a Thermo tandem mass spectrometer to produce a RAW file, converting the RAW data to mzML in ProteoWizard msConvert, producing Peptide-Spectrum Matches (PSMs) in a database search engine such as Comet, and then filtering PSMs to achieve a desired False Discovery Rate (FDR) before inferring parsimonious proteins to account for the observed peptides. In many cases, adding Post-Translational Modifications (PTMs) such as phosphorylation to the search makes only minor alterations in the procedure. This tutorial is intended to challenge this experience of shotgun proteome informatics along two key factors. First, for quite some time, Thermo has had formidable competition in the field of tandem mass spectrometry instrumentation, particularly from QqTOF instruments such as the TripleTOF series from SCIEX and the timsTOF series from Bruker. Processing QqTOF data through ProteoWizard msConvert is feasible, but it diminishes identifications in some essential ways. Second, many biochemistry contexts lead to samples that have diverse palettes of PTMs. Formalin fixation and paraffin embedding (FFPE) is widely used in clinical samples, and the PTMs induced by this process are quite necessary to incorporate in a database search if a representative proteome will be measured. This tutorial will focus on Fast Photochemical Oxidation of Proteins (FPOP), a strategy for structural biology that induces oxidative modifications in the parts of a protein that are exposed to solvent. Rather than being limited to just Met, Cys, and Trp side chains, FPOP oxidative modifications can be observed on almost any amino acid. This tutorial will encompass Thermo, SCIEX, and Bruker FPOP data to illustrate ways we can improve upon the peak lists and identified modifications we generate from each.
DOI: 10.6084/m9.figshare.24183318
title: chexnetANTsXNetClassification.h5

description: chexnet weights<br>
DOI: 10.6084/m9.figshare.24183318.v1
title: chexnetANTsXNetClassification.h5

description: chexnet weights<br>
DOI: 10.11583/dtu.17040518.v2
title: Data for "RumexWeeds: A Grassland Dataset for Agricultural Robotics"

description: The real-world dataset RumexWeeds targets the detection of the grassland weeds: Rumex obtusifolius L. and Rumex crispus L.. RumexWeeds includes whole image sequences with totally 5,510 images of 2.3 MP resolution and 15,519 manual bounding box annotations as well as 340 ground truth pixels-wise annotations, collected at 3 different farms and 4 different days in summer and autumn 2021. Additionally, navigational robot sensor points from GNSS, IMU and odometry are recorded.In a second iteration, we supplement the dataset with joint stem annotation: For each bounding box in the dataset, an ellipse annotation has been performed, representing the potential joint-stem position and the uncertainty of the human annotator.For a detailed description, please consider the related publications as well as the datasets website: https://dtu-pas.github.io/RumexWeeds/<br>
DOI: 10.11583/dtu.17040518
title: Data for "RumexWeeds: A Grassland Dataset for Agricultural Robotics"

description: The real-world dataset RumexWeeds targets the detection of the grassland weeds: Rumex obtusifolius L. and Rumex crispus L.. RumexWeeds includes whole image sequences with totally 5,510 images of 2.3 MP resolution and 15,519 manual bounding box annotations as well as 340 ground truth pixels-wise annotations, collected at 3 different farms and 4 different days in summer and autumn 2021. Additionally, navigational robot sensor points from GNSS, IMU and odometry are recorded.In a second iteration, we supplement the dataset with joint stem annotation: For each bounding box in the dataset, an ellipse annotation has been performed, representing the potential joint-stem position and the uncertainty of the human annotator.For a detailed description, please consider the related publications as well as the datasets website: https://dtu-pas.github.io/RumexWeeds/<br>
DOI: 10.11583/dtu.17040518.v1
title: Data for "RumexWeeds: A Grassland Dataset for Agricultural Robotics"

description: The real-world dataset RumexWeeds targets the detection of the grassland weeds: Rumex obtusifolius L. and Rumex crispus L.. RumexWeeds includes whole image sequences with totally 5,510 images of 2.3 MP resolution and 15,519 manual bounding box annotations as well as 340 ground truth pixels-wise annotations, collected at 3 different farms and 4 different days in summer and autumn 2021. Additionally, navigational robot sensor points from GNSS, IMU and odometry are recorded. <br> For a detailed description, please consider the related publications as well as the datasets website: https://dtu-pas.github.io/RumexWeeds/ <br>
DOI: 10.6084/m9.figshare.24183072
title: : <b>"Economic Inequality, Growth, and Societal Cohesion in Ghana: An In-Depth Analysis"</b>

description: This data provides a comprehensive examination of Ghana's economic growth, poverty reduction efforts, and the dynamics of income inequality. The data is then use to explore the impact of income inequality on societal cohesion Ghana and present policy recommendations while advocating for government action.
DOI: 10.6084/m9.figshare.24173385
title: RepEnTools - Cleaned RMSK.gtf for analysis

description: Cleaned RMSK.gtf for RepEnToolsOnly suitable for chm13v2Original bed12 file from {Hoyt, 2022}, made with repeat masker {www.repeatmasker.org}, downloaded from UCSC Table Browser {Karolchik, 2004}. Version: hub_3671779The repeat masker (RMSK) annotation file employed<b> </b>in <i>RepEnTools</i> is adjusted to correctly represent the annotated repeat element boundaries (e.g. red element). The UCSC Table Browser allows retrieval of the RMSK files generated specifically for chm13v2 {Hoyt, 2022; Karolchik, 2004 10.1093/nar/gkh103}. While the BigBed file displays the elements with correct annotations, visualising the unpacked version (bed12) reveals both the pHMM model used by RMSK (thin) and the actual annotated segment (thick). Notably, the UCSC gtf output reflects only the pHMM model, not the true repeat element (vertical red dashed line). To adjust the annotation file, we extracted the exons as gtf, sorted and merged overlapping annotations of identical name twice (in-house script), and performed table operations. Browser views generated using <i>IGV v2.15 </i>(<i>Integrative Genomics Viewer</i>) {Thorvaldsdottir, 2013}. pHMM – profile Hidden Markov Model.
DOI: 10.6084/m9.figshare.24173385.v1
title: RepEnTools - Cleaned RMSK.gtf for analysis

description: Cleaned RMSK.gtf for RepEnToolsOnly suitable for chm13v2Original bed12 file from {Hoyt, 2022}, made with repeat masker {www.repeatmasker.org}, downloaded from UCSC Table Browser {Karolchik, 2004}. Version: hub_3671779The repeat masker (RMSK) annotation file employed<b> </b>in <i>RepEnTools</i> is adjusted to correctly represent the annotated repeat element boundaries (e.g. red element). The UCSC Table Browser allows retrieval of the RMSK files generated specifically for chm13v2 {Hoyt, 2022; Karolchik, 2004 10.1093/nar/gkh103}. While the BigBed file displays the elements with correct annotations, visualising the unpacked version (bed12) reveals both the pHMM model used by RMSK (thin) and the actual annotated segment (thick). Notably, the UCSC gtf output reflects only the pHMM model, not the true repeat element (vertical red dashed line). To adjust the annotation file, we extracted the exons as gtf, sorted and merged overlapping annotations of identical name twice (in-house script), and performed table operations. Browser views generated using <i>IGV v2.15 </i>(<i>Integrative Genomics Viewer</i>) {Thorvaldsdottir, 2013}. pHMM – profile Hidden Markov Model.
DOI: 10.6084/m9.figshare.22802339.v1
title: The effect of fishing-capture stress on the oxygen uptake rate and swimming activity of a holocephalan

description: The aim of the experiment was to investigate potential alterations in oxygen uptake rates (<em>Ṁ</em>O2), a proxy for aerobic energetic use, caused by a fishing-capture stress experienced by elephant fishes (<em>Callorhinchus milii</em>), an holocephalan species. Two types of <em>Ṁ</em>O2 were measured: Active <em>Ṁ</em>O2, referring to the oxygen requirements of an animal actively swimming, and Inactive <em>Ṁ</em>O2, referring to the oxygen uptake of an animal at rest. Potential <em>Ṁ</em>O2 recovery and changes in swimming activity were also monitored. This allowed evaluating the extent of the consequences of the potential energetic alterations in the context of swimming and basal metabolism. The “DO_Data” dataset includes dissolved oxygen data recorded during respirometry trials and used to calculate <em>Ṁ</em>O2. These data have been collected from animals before (Pre-capture <em>Ṁ</em>O2), immediately after (After-capture <em>Ṁ</em>O2), and 7-days after (Recovery <em>Ṁ</em>O2) a simulated gillnet capture event. The “ResultsMO2” dataset contains the results for the calculated <em>Ṁ</em>O2s separately for the different animals and Pre-capture, After-capture, and Recovery <em>Ṁ</em>O2. Animal morphological data, including length, body mass, and volume, were also collected and included in this dataset. Lastly, the dataset also contains data on the percentual amount of time the animals spent swimming in each respirometry trial. A R script file is also available containing the codes used for the different statistical analysis and graphs.
DOI: 10.5281/zenodo.8370348
title: Wavefunctions

description: These are the wavefunctions used in the manuscript entitled <em>Electron Fields in Hydrogen</em>
DOI: 10.5281/zenodo.8370347
title: Wavefunctions

description: These are the wavefunctions used in the manuscript entitled <em>Electron Fields in Hydrogen</em>
DOI: 10.6084/m9.figshare.24183375
title: cxr_sample.nii.gz

description: ChexNet weights<br>
DOI: 10.6084/m9.figshare.24183375.v1
title: cxr_sample.nii.gz

description: ChexNet weights<br>
DOI: 10.34740/kaggle/dsv/6519548
title: COVID Vaccination in World (updated daily)
DOI: 10.57745/4d5tyh
title: read_dataset.py

description: Python code for reading the dataset
DOI: 10.57745/ajftju
title: iiwa_subworkspace_1.tab

description: Joint position and measured cartesian position for the iiwa in the first subworkspace
DOI: 10.57745/imdlr7
title: iiwa_subworkspace_2.tab

description: Joint position and measured cartesian position for the iiwa in the second subworkspace
DOI: 10.57745/lqqhrf
title: README.md

description: README
DOI: 10.57745/mfi2dj
title: subworkspace_1.tab

description: Dataset in the subworkspace 1
DOI: 10.57745/w0jxde
title: subworkspace_2.tab

description: Dataset in the subworkspace 1
DOI: 10.57745/zslpfx
title: README.md

description: README
DOI: 10.4121/fb1e03d3-5bb2-47d9-a5f4-d4f46b9356e2
title: Data underlying the study: Addition of iron does not ameliorate sulfide toxicity by sargassum influx to mangroves but dampens methane and nitrous oxide emissions

description: This dataset contains the data from a mesocosm experiment studying the impact of Sargassum inundations on red mangrove health, as well as greenhouse gas emissions. The data was collected through an experiment involving sargassum seaweed, iron oxyde powder, and red mangrove saplings, conducted from February to April 2022 at the greenhouse Nergena (Unifarm, Wageningen). Mangroves were exposed to re-hydrated sargassum originating on Bonaire (washed-up) to test the efficiency of Fe addition in preventing S2- accumulation in the sediment porewater and its toxicity to mangroves. GHG fluxes from the mesocosms were also measured.
DOI: 10.4121/fb1e03d3-5bb2-47d9-a5f4-d4f46b9356e2.v1
title: Data underlying the study: Addition of iron does not ameliorate sulfide toxicity by sargassum influx to mangroves but dampens methane and nitrous oxide emissions

description: This dataset contains the data from a mesocosm experiment studying the impact of Sargassum inundations on red mangrove health, as well as greenhouse gas emissions. The data was collected through an experiment involving sargassum seaweed, iron oxyde powder, and red mangrove saplings, conducted from February to April 2022 at the greenhouse Nergena (Unifarm, Wageningen). Mangroves were exposed to re-hydrated sargassum originating on Bonaire (washed-up) to test the efficiency of Fe addition in preventing S2- accumulation in the sediment porewater and its toxicity to mangroves. GHG fluxes from the mesocosms were also measured.
DOI: 10.5281/zenodo.8370377
title: Wikidata Dump temp

description: RDF dump of wikidata produced with wdumper.<br>View on wdumper<b>entity count<b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 38</b></b>
DOI: 10.5281/zenodo.8370376
title: Wikidata Dump temp

description: RDF dump of wikidata produced with wdumper.<br>View on wdumper<b>entity count<b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 38</b></b>
DOI: 10.21227/bjf4-6y15
title: Estimated trajectory data from our work

description: This dataset was used to support our work and provided to the review for reference. 
The TUM RGB-D dataset comprises image sequences from dynamic indoor settings, containing various line densities and scene dynamics conducive for SLAM analysis. We selected four walking and two sitting sequences to demonstrate high and low dynamics, respectively. The walking sequences (w/half, w/rpy, w/static, w/xyz) capture two individuals in motion, including chair movement, while the sitting sequences (s/half, s/xyz) document two individuals in conversation with minimal movements. The appended terms `half', `rpy', `static', and `xyz' specify different camera movements.
The KITTI dataset consists of images in natural and urban outdoor settings. The KITTI dataset is a collection of images captured in varied natural and urban outdoor environments. Our research specifically zeroes in on sequences 00 to 10, all of which supply us with verified ground truth data. The sequences we've chosen for analysis are characterized by their unique mix of traffic density and the prevalence of man-made structures. By conducting a comprehensive examination of these sequences, we are able to gauge the effectiveness and robustness of our DPL-SLAM system across an array of different driving environments.
DOI: 10.5281/zenodo.7695323
title: Synthesis of Phenol-Tagged Ruthenium Alkylidene Olefin Metathesis Catalysts for Robust Immobilisation Inside Met-al-Organic Framework Support

description: Data confirming the structure of the new compounds obtained within the project, published in <em>Catalysts</em> <strong>2023</strong>, <em>13</em>(2), 297; https://doi.org/10.3390/catal13020297 The research was supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 860322 for the ITN-EJD “Coordination Chemistry Inspires Molecular Catalysis” (CCIMC) and by the National Science Centre, Poland (OPUS grant 2017/27/B/ST5/00941).
DOI: 10.5281/zenodo.7695324
title: Synthesis of Phenol-Tagged Ruthenium Alkylidene Olefin Metathesis Catalysts for Robust Immobilisation Inside Met-al-Organic Framework Support

description: Data confirming the structure of the new compounds obtained within the project, published in <em>Catalysts</em> <strong>2023</strong>, <em>13</em>(2), 297; https://doi.org/10.3390/catal13020297 The research was supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 860322 for the ITN-EJD “Coordination Chemistry Inspires Molecular Catalysis” (CCIMC) and by the National Science Centre, Poland (OPUS grant 2017/27/B/ST5/00941).
DOI: 10.5281/zenodo.6808367
title: X-ray properties of early-type stars in the Tarantula Nebula from T-ReX

description: X-ray data related to paper with same title.
DOI: 10.5281/zenodo.6808366
title: X-ray properties of early-type stars in the Tarantula Nebula from T-ReX

description: X-ray data related to paper with same title.
DOI: 10.5281/zenodo.8370241
title: Diffraction data underpinning the structure of StayGold determined by X-ray crystallography (PDB code 8BXT)

description: Raw diffraction data underpinning the crystal structure of StayGold fluorescent protein. This is the raw data underpinning PDB entry 8BXT.
description: Funding: UKRI MRC (MR/N014294/1) University of Warwick A-Star Research Attachment Programme Wellcome Trust (WT101885MA) DBT-Wellcome Trust India Alliance (IA/I/21/1/505633) and Science and Engineering Research Board (SERB-SRG/2021/001600) UKRI BBSRC (BB/V017101/1).
DOI: 10.5281/zenodo.8370240
title: Diffraction data underpinning the structure of StayGold determined by X-ray crystallography (PDB code 8BXT)

description: Raw diffraction data underpinning the crystal structure of StayGold fluorescent protein. This is the raw data underpinning PDB entry 8BXT.
description: Funding: UKRI MRC (MR/N014294/1) University of Warwick A-Star Research Attachment Programme Wellcome Trust (WT101885MA) DBT-Wellcome Trust India Alliance (IA/I/21/1/505633) and Science and Engineering Research Board (SERB-SRG/2021/001600) UKRI BBSRC (BB/V017101/1).
DOI: 10.6084/m9.figshare.24183489
title: Follow list for Weibo users

description: Follow list for Weibo users
DOI: 10.5281/zenodo.8330855
title: Manipulation of photoperiod induces fat storage, but not fat mobilization in the migratory songbird, Dumetella carolinensis (Gray Catbird).

description: Associated R code and data sets for analyses related to the "Manipulation of photoperiod induces fat storage, but not fat mobilization in the migratory songbird, Dumetella carolinensis (Gray Catbird)." publication.
description: RUNNING TITLE: Photoperiod induces fat storage in a migratory songbird.
DOI: 10.5281/zenodo.8330854
title: Manipulation of photoperiod induces fat storage, but not fat mobilization in the migratory songbird, Dumetella carolinensis (Gray Catbird).

description: Associated R code and data sets for analyses related to the "Manipulation of photoperiod induces fat storage, but not fat mobilization in the migratory songbird, Dumetella carolinensis (Gray Catbird)." publication.
description: RUNNING TITLE: Photoperiod induces fat storage in a migratory songbird.
DOI: 10.21227/mtg7-eb43
title: BLE-WBAN: RF real-world dataset of BLE-devices in human-centric healthcare environments

description: In communication and networking research, obtaining large, real-world datasets related to the physical layer has always been challenging, especially in IoT and Health IoT. We introduce an open-source physical-layer dataset of Bluetooth Low Energy (BLE) IoT sensor devices recorded in an anechoic chamber using USRP x310. With a 100Msps sampling rate, it covers the entire BLE spectrum, featuring on-body and off-body scenarios with 13 BLE devices (ESP32s) from the same manufacturer. the goal is to study the physical layer characteristics of both on-body and off-body signals. The dataset is also available through MongoDB with a Python tool for analysis; for more details, please visit our GitHub page.
DOI: 10.5281/zenodo.8370402
title: HIGGS_M_WP5_423_OST_Techno-economic-model_190620171000_230922

description: Metadata for graphs of HIGGS' deliverable D5.3 "Intermediate report: key findings on potential and enablers"
DOI: 10.5281/zenodo.8370401
title: HIGGS_M_WP5_423_OST_Techno-economic-model_190620171000_230922

description: Metadata for graphs of HIGGS' deliverable D5.3 "Intermediate report: key findings on potential and enablers"
DOI: 10.5281/zenodo.8370459
title: HIGGS_M_WP5_423_OST_Techno-economic-model_Techno-economic-model_111120171800_230922

description: Metadata of graphs of HIGGS' deliverable D5.3 "Intermediate report: key findings on potential and enablers"
DOI: 10.5281/zenodo.8370458
title: HIGGS_M_WP5_423_OST_Techno-economic-model_Techno-economic-model_111120171800_230922

description: Metadata of graphs of HIGGS' deliverable D5.3 "Intermediate report: key findings on potential and enablers"