cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.060b1/26
title: file 26 - pedigree for founder simulation

description: Pedigree used in simulation of bottlenecks.
DOI: 10.5061/dryad.060b1/27
title: file 27 - bottleneck pedigree for x1 founder simulation

description: Pedigree needed as part of simulate the n = 10 x 1 bottleneck while maintaining variance in individual IBD.
DOI: 10.5061/dryad.1mp91/1
title: Data for robustness analysis

description: Please see the file README.pdf.
DOI: 10.5061/dryad.2f1k3/5
title: Anas crecca FGB alleles.fas

description: FASTA file containing 100 resolved alleles from intron 7 of the beta fibrinogen (FGB) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 50 alleles were sampled from Eurasia, and the next 50 were sampled from North America.
DOI: 10.5061/dryad.39mc5/2
title: UCLDClockGamma_50mil

description: Beast .xml file for UCLD analysis with 50 million generations
DOI: 10.5061/dryad.39mc5/3
title: RandomClockGamma_50mil

description: Beast .xml file for Random Clock analysis with 50 million generations
DOI: 10.5061/dryad.47574/4
title: SexRatio
DOI: 10.5061/dryad.53942/1
title: SurvivalOffspring_PorportionalHazard
DOI: 10.5061/dryad.53942/2
title: SurvivalFemaleProportionalHAZARD
DOI: 10.5061/dryad.53942/3
title: MATRIPHAGY mass change
DOI: 10.5061/dryad.53942/4
title: MASTER_FEMALEandOFFSPRINGmass
DOI: 10.5061/dryad.53942/5
title: Female Hunting Success
DOI: 10.5061/dryad.668tn571/1
title: Simulated data
DOI: 10.5061/dryad.675tt/2
title: hmg expression_genetics

description: Summary of alpha and beta hemoglobin gene expression in the kidney, brain, and gill tissues of dwarf and normal lake whitefish from four lakes. Also reported is the SNP genotype for each of the whitefish at locus 1544-242.
DOI: 10.5061/dryad.771gr/2
title: Vole Biodiversity Layers

description: Four rodent and vole biodiversity index predicted distribution maps have been generated to support investigations on how species richness can affect the spread of Hantavirus and Tick Borne Virus (TBV).
DOI: 10.5061/dryad.782c2/1
title: JEB-2012-00238.R1 Hunt et al
DOI: 10.5061/dryad.7b11m/1
title: Epiphyseal closure stages in limb bones of mammals
DOI: 10.5061/dryad.7df61/1
title: microsatellite data

description: wasp and plant microsatellite data
DOI: 10.5061/dryad.7df61/2
title: partial coding sequence of the wingless gene

description: partial coding sequence of the wingless gene
DOI: 10.5061/dryad.7df61/3
title: nuclear ribosomal intergenic spacer (ITS)-1

description: nuclear ribosomal intergenic spacer (ITS)-1
DOI: 10.5061/dryad.7df61/4
title: the third intron of the nitrate reductase gene (NIA-i3)

description: the third intron of the nitrate reductase gene (NIA-i3)
DOI: 10.5061/dryad.7df61/5
title: intergenic region of chloroplast (cp) trnT-trnL

description: intergenic region of chloroplast (cp) trnT-trnL
DOI: 10.5061/dryad.7gg47/1
title: Chickadee SNP data

description: Genotypes of 1425 SNPs for the 167 chickadees described in the manuscript. Chickadees were sampled in southeastern Pennsylvania. SNPs were identified using GBS (genotyping by sequencing), in conjunction with the UNEAK pipeline (part of Tassel) and a Perl script to call genotypes in a max likelihood framework.
DOI: 10.5061/dryad.7hg56/1
title: Field and lab experiment data on Idotea balthica

description: File contains all data from field and lab experiments on Idotea balthica. Specific tabs: Field Collections: Body size of isopods collected from field, Lab Cultures: Body size of isopods raised in common garden environment, Egg Data: Data on egg numbers dissected from field collected females vs. female length and dry weight, Egg Size: Data on sizes of eggs dissected from field collected females vs. female length, Survivorship Data: Survivorship of isopods raised across a range of temperatures, Growth Data: Growth of isopods across a range of temperatures, Reproductive Data: Time to and size at maturity data for isopods raised at 18 and 24 degrees, June Predation: Predation rates from field tethering experiments conducted in June, August Predation: Predation rates from field tethering experiments conducted in August.
DOI: 10.5061/dryad.7k048/1
title: Leone_CCSVI

description: The filke contains data about 38 multiple sclerosis patients and 55 age-matched (± 5 years) controls.  Each subject  (case or control) has been evaluated with color-Doppler sonography by  two operators (column headline= alpha or  beta) in accordance with Zamboni's five criteria (column headline=criterion1 to criterion5).   The file contains additional data on smoke and the presence of varicous veins at lower limbs.
DOI: 10.5061/dryad.7kb11/1
title: 16Sall_haplotypeFINAL

description: Fasta file containing alignment of 16S haplotypes of Artemia franciscana used to carry out our phylogenetic analyses.
DOI: 10.5061/dryad.7n344/7
title: aligned_ALO_yaeT_fasta_sequences

description: Bacterial yaeT aligned fasta sequences
DOI: 10.5061/dryad.7n344/8
title: ALO_yaeT_tree_file

description: Bacterial yaeT ML tree file
DOI: 10.5061/dryad.7p52d/1
title: Cattani et al JEB2012

description: Data and descriptive analysis
DOI: 10.5061/dryad.8140s/2
title: simulation package

description: The simualtion package contains all simulated data. The folders indicate the scenarios. Both individual- and population level output is included.
DOI: 10.5061/dryad.8pj1b/1
title: Audusseauetal.2013

description: The data included in the following excel file are the result of a laboratory experiment.Polygonia c-album larvae have been reared in two consecutive broods and measures of larval performance have been recorded through the rearing (mass and date of newly molted 5th instar larvae and pupae). The table associates for each individual its family, the hathcing date (start_date), the rearing treatment (brood, host plant, temperature), sex, and morph and comments.
DOI: 10.5061/dryad.9f2p5/1
title: minus_sel
DOI: 10.5061/dryad.9f2p5/2
title: plus_sel
DOI: 10.5061/dryad.9f2p5/3
title: plus_tet
DOI: 10.5061/dryad.9f2p5/4
title: Treponema_primitia_zas2_genome

description: FASTA File of T. primitia azs2 Genomic Sequence
DOI: 10.5061/dryad.9qh56/1
title: Microsatellite Genotypes

description: Microsatellite Genotypes for reindeer and caribou in Alaska, USA. A text file formatted in Genalex format.
DOI: 10.5061/dryad.cg849/1
title: Anthracycline data SPSS
DOI: 10.5061/dryad.cg8r0/1
title: Kelp Strength. A Canadian Healthy Oceans Network Ecosystem Function Project, EF-11

description: Data are measurements of maximum stress before breakage, toughness, modulus of material stiffness, and strain at breakage for kelp blades of three different species (Laminaria digitata, Saccharina latissima, and Laminaria complanata) with different types of blade damage. Blade damage type is indicated in the Sample Type column. Excavations refer to partial thickness grazing scars in blades created by Lacuna vincta, holes refer to full thickness grazing holes in blades created by Lacuna vincta, MM refers to blades covered with Membranipora membranacea, but with no visible degradation, and MM lesion refers to blades covered by Membranipora membranacea with visible degradation. Undamaged samples were controls.
DOI: 10.5061/dryad.f32n1/1
title: data_CubaynesJAE

description: This file gathers all data used in the manuscript. Explanation about the data are given in the first sheet. Individual capture histories (including location, age and sex) of the 280 radio-collared wolves in the Northern Range and the Interior area of Yellowstone National Park, between 1998-2010, are presented in Sheet1. Environmental covariates used in the survival analysis (about wolves, elk and weather data) are presented in Sheet2. Variables used in the path analysis are presented in Sheet3.
DOI: 10.5061/dryad.f55c5/1
title: Data and phylogenetic estimates for Oliver et al. 2014

description: Each NEXUS-formatted file includes (1) a phylogenetic estimate of relationships among nymphalid butterfly families based on Wahlberg et al. (2009) and (2) a data matrix for wing pattern characters.
DOI: 10.5061/dryad.g6r70/5
title: EricalesML_SH

description: Ericales phylogeny in newick format with local SH support values on nodes. Tree estimated with RAxML from multi-locus DNA dataset.
DOI: 10.5061/dryad.gj7hb/1
title: Individual invader establishment for 2012 field season.

description: Invader establishment data, for plots started in 2011. Data through the 2012 field season.
DOI: 10.5061/dryad.h0228/11
title: DarwinTunes-medley-at-1250-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h0228/12
title: DarwinTunes-medley-at-1375-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h0228/13
title: DarwinTunes-medley-at-1500-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h0228/14
title: DarwinTunes-medley-at-1600-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h6p35/1
title: Allele counts

description: This file contains the allele counts for all individuals at all loci. Only SNPs with more than 5 reads/marker/geographic region were included. Because of low sample sizes individuals were grouped by geographic regions rather than by sampling population.
DOI: 10.5061/dryad.h6p35/2
title: MOLLIES_Fishlocalities_popgenpaper

description: The above file is a list of the sampling localities used for this study. Whenever possible we included the coordinates, but for some sampling localities that we did not visit ourselves the coordinates are lacking.
DOI: 10.5061/dryad.h6p35/3
title: id_correction_file

description: This file lists the IDs of the individuals as they appear in the parsed raw data and the corrected IDs. Due to some typos in the original barcode-ID file some individuals were mis-labelled and this correction can be performed after running the bcftools step given that the output of that analysis is easier to work with than the parsed raw sequences.
DOI: 10.5061/dryad.h6p35/4
title: mollyseqs_5.fastq
DOI: 10.5061/dryad.h6p35/5
title: mollyseqs_4.fastq
DOI: 10.5061/dryad.h6p35/6
title: mollyseqs_3.fastq
DOI: 10.5061/dryad.h6p35/7
title: mollyseqs_2.fastq
DOI: 10.5061/dryad.j18q1/1
title: Talraico et al. 2014 Cardiac Transcript Data

description: This transcriptome dataset includes the differential analysis of cardiac transcripts modulated in vivo within one hour of treatment with either isoproterenol (beta adrenergic receptor agonist, 1 mg/kg), gefitinib (epidermal growth factor inhibitor, 5 mg/kg) or both.  Analyses are gefitinib versus vehicle, isoproterenol versus vehicle, gefitinib+isoproterenol versus vehicle and gefitinib+isoproterenol versus isoproterenol.
DOI: 10.5061/dryad.j9704/4
title: MillipedeCountries-No0s

description: Countries with relevant information concerning climate, human population, millipede species, etc.
DOI: 10.5061/dryad.jr66k/1
title: Skunk raw data

description: Includes all data from striped skunk individuals sampled in the study: geographic coordinates, sex, year of sampling, and multilocus genotype.
DOI: 10.5061/dryad.jr66k/2
title: Raccoon raw data

description: Includes data from all raccoon individuals sampled in this study: geographic coordinates, sex, year of sampling, and multilocus genotype.
DOI: 10.5061/dryad.jr66k/3
title: Skunk MRM data

description: Data used for MRM analyses in striped skunks. For each individual pairwise comparisons, geographic and genetic distances, habitat proportions, edge density, and number of barriers (rivers and highways) are provided.
DOI: 10.5061/dryad.jr66k/4
title: Raccoon MRM data

description: Data used for MRM analyses in raccoons. For each individual pairwise comparisons, geographic and genetic distances, habitat proportions, edge density, and number of barriers (rivers and highways) are provided.
DOI: 10.5061/dryad.jr934/1
title: Repeatability of exploratory behaviour in red knots

description: This data file contains an individual's experimental exploration score, field gizzard mass, and body mass at each replicate as well as their sex. See the ReadMe file for more information.
DOI: 10.5061/dryad.k8r75/1
title: BauchBeckerVerhulst_MolEcol_Long-telomeres-better-predict-fitness-proxies

description: Data
DOI: 10.5061/dryad.m994g/1
title: Spatiotemporal Survey of Chytrid in Brazilian Atlantic Forest

description: Data from: Long-term endemism of two highly divergent lineages of the amphibian-killing fungus in the Atlantic Forest of BrazilAuthors: Rodriguez, David, Becker, Carlos, Pupin, Nadya, Haddad, Célio, Zamudio, KellyJournal: Molecular EcologySubmitted: 2013 File type: Excel
DOI: 10.5061/dryad.mm7kk/1
title: Matrixes

description: M1: Matrix of stigma height and anther height of flowers of Primula marginata and Primula allionii. The morph types was reported L = long-styled flower (pin); S = shorth-styled flowers (thrum). Flowers are reported in rows. Species, morph, stigma height and anther height are reported in columns. M2: ISSR and AFLP combined matrix. Individuals are reported in rows. IssR and AFLP bands are reported in columns. M3: trnL intron and psbA-trnH intregenic spacer sequences concatenated to form a single matrix. The code of each individuals is reported.
DOI: 10.5061/dryad.n576n/1
title: Trueman 2014 Fish Isotope data

description: Stable isotope data (d13C PDB and d15N air) from white muscle tissue of fishes caught by demersal trawl on the Rockall trough. Associated data are: Species name, feeding type (benthic or benthopelagic), capture (trawl) depth in meters and fish mass in grammes
DOI: 10.5061/dryad.pd775/1
title: DataUshimaru_etalFig2

description: csv file for pollinator visitation data
DOI: 10.5061/dryad.pd775/2
title: DataUshimaru_etalFigs34

description: csv file for pollen counting data
DOI: 10.5061/dryad.pd775/3
title: DataUshimaruetalFigs43

description: csv file for floral trait measurements and pollen removal data
DOI: 10.5061/dryad.q7s8k/1
title: Data from: Multifaceted, cross-generational costs of hybridization in sibling Drosophila species

description: Includes all data on flies reared in the laboratory as part of the experiments described in the paper. Read Me file describes each worksheet of the data file.
DOI: 10.5061/dryad.qk60s/1
title: IdentifyLoci_SpeciesDiagnostic Perl Script

description: The "IdentifyLoci.pl" PERL script (original script described by Hecht et al. 2013) was modified such that it only identified SNP variations among but not within species collections, effectively ignoring within species variations.  Hecht BC, Campbell NR, Holecek DE, Narum SR (2013) Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout. Molecular Ecology, 22, 3061–3076 doi: 10.1111/mec.12082.
DOI: 10.5061/dryad.qk60s/2
title: EtrMERdryad_96SNPdataset

description: The individuals from collections described in Table S2 are included with all details of their relevant metadata and 96 SNP genotypic data.  SNP data is in raw 2 column format in which the nucleotide of allele 1 and allele 2 are shown.
DOI: 10.5061/dryad.060b1/28
title: file 28 - bottleneck pedigree for x5 founder simulation

description: Pedigree needed as part of simulate the n = 10 x 5 bottleneck while maintaining variance in individual IBD.
DOI: 10.5061/dryad.060b1/29
title: list of file names and descriptions
DOI: 10.5061/dryad.1847s/1
title: Presence/absence of buzzes and associated covariates

description: data_BACI.csv contains the data used for the analysis of buzz occurrence as a function of seismic period (before or during) and experimental block (control or impact). POD.no is the device number, to be used as a random effect; pres.buzzes indicates whether any buzz was detected in that hour. data_distance.csv contains the data used for the analysis of buzz occurrence as a function of distance from the source vessel. bootstrap_coef_sel.csv contains the bootstrapped coefficients of the relationship between SEL and the probability of buzz occurrence.
DOI: 10.5061/dryad.1j292/1
title: crisp_dna

description: DNA alignment of the cysteine rich secretory protein (CRISP) toxin family
DOI: 10.5061/dryad.23rc0/1
title: Nexus_alignments

description: Nexus files of analyzed regions for 27 anonymous nuclear loci and 3 mitochondrial fragments
DOI: 10.5061/dryad.23rc0/2
title: MrBayes gene tree results

description: Input files and consensus trees from MrBayes gene tree analyses.
DOI: 10.5061/dryad.47vh3/1
title: Nanninga_microsatellite genotypes

description: This file includes the genotypes of 991 anemonefish, Amphiprion bicinctus, at 38 microsatellite loci. Samples were collected along the Saudi Arabian Red Sea coast between 2009 and 2011. For information on sampling locations please refer to file: Nanninga_site information.
DOI: 10.5061/dryad.47vh3/2
title: Nanninga_site information

description: This file includes descriptors of sample sites for Amphiprion bicinctus along the Saudi Arabian Red Sea coast, including information on mean chlorophyll-a concentrations taken from Raitsos et al. 2013, PLoS one).
DOI: 10.5061/dryad.6630k/1
title: Annotated FASTA file of custom Panicum virgatum (Alamo AP13) transcriptome assembly

description: A custom transcriptome assembly produced from publicly available EST data from accession Alamo AP13 (454 data from NCBI’s Sequence Read Archive: accessions SRR187765-SRR187775; Sanger sequences from cDNA libraries CFNU, CFNT, and EXTA; Zhang et al., 2013). Reads were quality filtered, screened for adaptor and vector contamination, and assembled in Roche De Novo Assembler v2.6 with the ‘-cdna’ option. This FASTA file has been compressed using the GZIP utility.
DOI: 10.5061/dryad.6630k/2
title: AlamoAP13_transcriptome_annotations

description: Homology-based annotations for the custom P. virgatum Alamo AP13 transcriptome. A tab-delimited text file. Column IDs: Seq=sequence identifier; Isogroup=cluster of transcripts thought to originate from the same gene; Len=length in base pairs; Match=accession number of best match; Gene=name of the best match; GO=Gene Ontology terms associated with the best match.
DOI: 10.5061/dryad.7kb11/2
title: Munoz et al Phylogeography of Artemia franciscana

description: Fasta alignment for COI haplotypes used in the phylogenetic analyses.
DOI: 10.5061/dryad.7kb11/3
title: Artemia franciscana population status (native vs introduced)coding

description: intro is a text file in Canoco format coding the native (0) introduced (1) status of each population studied. Localities are coded according to Table 1 of the paper.
DOI: 10.5061/dryad.7kb11/4
title: Geographic coordinates for each studied locality.

description: geofdist is a text file in Canoco format with the latitude and longitude information for each studied locality. Localities are coded according to Table 1 of the paper.
DOI: 10.5061/dryad.7kb11/5
title: Population flyway assignation according to Boere and Stroud (2006)

description: flyway is a text file in Canoco format coding for the inclusion of each locality in the Pacific flyway (first column), Central flyway (second column) and Atlantic flyway (third column). The localities were assigned to flyways according to Boere and Stroud (2006). Localities are coded according to Table 1 of the paper.
DOI: 10.5061/dryad.7kb11/6
title: Population flyway assignation according to Birdlife International

description: flyBirdlife is a text file in Canoco format coding for the inclusion of each locality in the Pacific flyway (first column), Central flyway (second column) and Atlantic flyway (third column). The localities were assigned to flyways according to Birdlife International (extracted from http://www.birdlife.org/datazone/userfiles/file/sowb/flyways/. Localities are coded according to Table 1 of the paper.
DOI: 10.5061/dryad.7kb11/7
title: File with environmental variables (introductions and flyways). a

description: envdist is a text file in Canoco format coding for the inclusion of each locality in the Pacific flyway (first column), Central flyway (second column), Atlantic flyway (third column) and the native or introduced status of each population (fourth column). The localities were assigned to flyways according to Boere and Stroud (2006). Localities are coded according to Table 1 of the paper.
DOI: 10.5061/dryad.7kb11/8
title: File with environmental variables (introductions and flyways). b

description: envBirdlife is a text file in Canoco format coding for the inclusion of each locality in the Pacific flyway (first column), Central flyway (second column), Atlantic flyway (third column) and the native or introduced status of each population (fourth column). The localities were assigned to flyways according to Birdlife International (extracted from http://www.birdlife.org/datazone/userfiles/file/sowb/flyways/. Localities are coded according to Table 1 of the paper.
DOI: 10.5061/dryad.7kb11/9
title: Genetic distances between Artemia franciscana populations

description: genetic distances between populations estimated from the sample loadings of a Principal Components Analysis calculated on FST values using Kimura 2-Parameter as the evolutionary model for COI data and formatted for its use in Canoco. Localities are coded according to Table 1 of the paper.
DOI: 10.5061/dryad.7t354/1
title: Anon 1

description: Anonymous locus 1 sequence alignment
DOI: 10.5061/dryad.7t354/2
title: Anon 2

description: Anonymous locus 2 sequence alignment
DOI: 10.5061/dryad.7vv50/1
title: Genotype_data

description: This file contains a table with genotypes of the individuals from populations (inbred and outbred) of generation 0 and 100.
DOI: 10.5061/dryad.7vv50/10
title: hap_G100.A2.O_IV

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a androdioecious population, replicate nº2, from generation G100.
DOI: 10.5061/dryad.7vv50/11
title: hap_G100.A2.O_X

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a androdioecious population, replicate nº2, from generation G100.
DOI: 10.5061/dryad.7vv50/12
title: hap_G100.A3.O_IV

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a androdioecious population, replicate nº3, from generation G100.
DOI: 10.5061/dryad.7vv50/13
title: hap_G100.A3.O_X

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a androdioecious population, replicate nº3, from generation G100.
DOI: 10.5061/dryad.7vv50/14
title: hap_G100.D1.O_IV

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a dioecious population, replicate nº1, from generation G100.
DOI: 10.5061/dryad.7vv50/15
title: hap_G100.D1.O_X

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a dioecious population, replicate nº1, from generation G100.
DOI: 10.5061/dryad.7vv50/16
title: hap_G100.D2.O_IV

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a dioecious population, replicate nº2, from generation G100.
DOI: 10.5061/dryad.810f1/2
title: updated data file

description: this data file contains the final data for the submitted manuscript
DOI: 10.5061/dryad.810f1/3
title: R script for analyzing field data from experiments in Michigan

description: R script for analyzing field data from experiments in Michigan
DOI: 10.5061/dryad.c959s/1
title: data140303

description: This is a simple comma separated values (.csv) file. See details in readme file.