cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14514898
title: Sets of processed and recalculated earthquake data with seismic events potentially triggering events of landslide activity on the Moxi 1 landslide and Moxi 2 landslide, Sichuan, China

description: Sets of processed and recalculated earthquake data with seismic events potentially triggering events of landslide activity on the Moxi 1 landslide and Moxi 2 landslide, Sichuan, China.

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.
DOI: 10.6084/m9.figshare.c.3806395_d1.v1
title: Additional file 1: of Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants

description: Table S1. Differentially expressed cold-regulated genes (CORs) of blueberry in non-acclimated floral buds. FDR (false discovery rate)
DOI: 10.6084/m9.figshare.c.3806368_d5
title: Additional file 5: Table S3. of Biologically constrained optimization based cell membrane segmentation in C. elegans embryos

description: Deviation between two adjacent time points for all cell shape features (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3806395_d1
title: Additional file 1: of Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants

description: Table S1. Differentially expressed cold-regulated genes (CORs) of blueberry in non-acclimated floral buds. FDR (false discovery rate)
DOI: 10.6084/m9.figshare.c.3806401_d1.v1
title: Additional file 1: Supplemental Tables. of Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases

description: Table S1. Platform comparison. Table S2. Alignment metrics. Table S3. Summary metrics for linked read WGS. Table S4. Long Ranger SV results. Table S5 LumPy SV summary. Table S6. CNV results. Table S7. SV phasing results for both metastatic sites. Table S8. De novo assembly statistics for both metastatic sites. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3806401_d1
title: Additional file 1: Supplemental Tables. of Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases

description: Table S1. Platform comparison. Table S2. Alignment metrics. Table S3. Summary metrics for linked read WGS. Table S4. Long Ranger SV results. Table S5 LumPy SV summary. Table S6. CNV results. Table S7. SV phasing results for both metastatic sites. Table S8. De novo assembly statistics for both metastatic sites. (XLSX 50 kb)
DOI: 10.15468/dl.v49p2n
title: Occurrence Download

description: A dataset containing 410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma mavortium nebulosum Hallowell, 1853)"
 ]
}

 The dataset includes 410 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039424-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3806623_d1
title: Additional file 1: of Breast cancer patient delay in Fukushima, Japan following the 2011 triple disaster: a long-term retrospective study

description: Patient characteristics of excessive patient delay pre- and post-disaster. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3806623_d1.v1
title: Additional file 1: of Breast cancer patient delay in Fukushima, Japan following the 2011 triple disaster: a long-term retrospective study

description: Patient characteristics of excessive patient delay pre- and post-disaster. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3808612_d2.v1
title: Additional file 2: Table S1. of Continuous long-term cytotoxicity monitoring in 3D spheroids of beetle luciferase-expressing hepatocytes by nondestructive bioluminescence measurement

description: List of Phase I, Phase II, and transporters whose gene expressions in 3D spheroid was 1.5-fold higher (p
DOI: 10.6084/m9.figshare.c.3808618_d1
title: Additional file 1: Table S1. of The relation between DNA methylation patterns and serum cytokine levels in community-dwelling adults: a preliminary study

description: Differentially methylated position (DMP) analysis of middle-aged and elderly participants. Description: Association of each CpG loci with the variables: age group, Ln IL-10, Ln TNF, Ln IL-6, and Ln IL-8. Analysis performed using limma on M-values, and the difference (log fold-change or regression coefficient) and significance (unadjusted and FDR-adjusted p-value, and log-odds difference (B)) presented for all probes with an unadjusted p-value &lt;0.05 (XLSX 12493 kb)
DOI: 10.6084/m9.figshare.c.3808612_d2
title: Additional file 2: Table S1. of Continuous long-term cytotoxicity monitoring in 3D spheroids of beetle luciferase-expressing hepatocytes by nondestructive bioluminescence measurement

description: List of Phase I, Phase II, and transporters whose gene expressions in 3D spheroid was 1.5-fold higher (p
DOI: 10.5281/zenodo.13990327
title: Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics: fastq & bam files - Sample S4_Col_Sig

description: You can find here the fastq and bam files related to the datasets used in the publication: 

In this particular upload, you can find the fastq (version 1) and bam (version 2) files of the two replicates of sample S4_Col_Sig (A120838)

Valdeolivas, A., Amberg, B., Giroud, N. et al. Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics. npj Precis. Onc. 8, 10 (2024). https://doi.org/10.1038/s41698-023-00488-4
DOI: 10.5281/zenodo.13990328
title: Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics: fastq files - Sample S4_Col_Sig

description: You can find here the fastq files related to the datasets used in the publication: 

In this particular upload, you can find the fastq files of the two replicates of sample S4_Col_Sig (A120838)

Valdeolivas, A., Amberg, B., Giroud, N. et al. Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics. npj Precis. Onc. 8, 10 (2024). https://doi.org/10.1038/s41698-023-00488-4
DOI: 10.5281/zenodo.14514703
title: Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics: fastq & bam files - Sample S4_Col_Sig

description: You can find here the fastq and bam files related to the datasets used in the publication: 

In this particular upload, you can find the fastq (version 1) and bam (version 2) files of the two replicates of sample S4_Col_Sig (A120838)

Valdeolivas, A., Amberg, B., Giroud, N. et al. Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics. npj Precis. Onc. 8, 10 (2024). https://doi.org/10.1038/s41698-023-00488-4
DOI: 10.5281/zenodo.14514464
title: Sets of processed and recalculated precipitation data with precipitation types and seasons potentially controlling the activity of study landslides and events of precipitation which potentially triggered events of landslide activity on the Moxi 1 and Moxi 2 landslide, Sichuan, China

description: Sets of processed and recalculated precipitation data with precipitation types and seasons potentially controlling the activity of study landslides and events of precipitation which potentially triggered events of landslide activity on the Moxi 1 and Moxi 2 landslide, Sichuan, China.

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.
DOI: 10.5281/zenodo.14514465
title: Sets of processed and recalculated precipitation data with precipitation types and seasons potentially controlling the activity of study landslides and events of precipitation which potentially triggered events of landslide activity on the Moxi 1 and Moxi 2 landslide, Sichuan, China

description: Sets of processed and recalculated precipitation data with precipitation types and seasons potentially controlling the activity of study landslides and events of precipitation which potentially triggered events of landslide activity on the Moxi 1 and Moxi 2 landslide, Sichuan, China.

Data were used in: Wistuba, M., Malik, I., Tie, Y., Gorczyca, E., Zhang, X., Wang, J., Lu, T., 2024. Indicating landslide hazard from tree rings – ecosystem service provided by an alder forest in the Hengduan Mts, Sichuan, China. Ecosystem Services, 67, 101619.

 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project no. BPN/GIN/2021/1/00014.
DOI: 10.6084/m9.figshare.c.3810103_d1.v1
title: Additional file 1 of Early response index: a statistic to discover potential early stage disease biomarkers

description: Proteins detected by different methods in different days.xlsx â   This file lists all the significant features detected by various methods at different timepoints on EAE dataset. (XLSX 34.1 kb)
DOI: 10.6084/m9.figshare.c.3810103_d1
title: Additional file 1 of Early response index: a statistic to discover potential early stage disease biomarkers

description: Proteins detected by different methods in different days.xlsx â   This file lists all the significant features detected by various methods at different timepoints on EAE dataset. (XLSX 34.1 kb)
DOI: 10.6084/m9.figshare.c.3810124_d1.v1
title: Additional file 1: Table S1. of Assessing the impact of health research on health policies: a study of the Dodowa Health Research Centre, Ghana

description: Individually randomized trial of rapid diagnostic tests in rural Ghana. Table S2. Home management of fevers in children under-five: a cluster randomized controlled trial in southern Ghana. Table S3. Assessments of male involvement in family planning decision making and practice and its influence on the uptake of family planning in the Dangme West district. Table S4. Examination of the TB enablers package in the Dodowa sub-district of the Dangme West district in the Greater Accra region of Ghana. Table S5. Mutual health organizations (MHOâ  s) in Ghana and implications for improving the success of health insurance in Ghana. (ODT 59.6 kb)
DOI: 10.6084/m9.figshare.c.3810133_d1.v1
title: Additional file 1: of Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes

description: RATE_validation_Additional_file_1.xlsx: Input data used for determining HLA restrictions using RATE. (XLSX 75Â kb)
DOI: 10.6084/m9.figshare.c.3810124_d1
title: Additional file 1: Table S1. of Assessing the impact of health research on health policies: a study of the Dodowa Health Research Centre, Ghana

description: Individually randomized trial of rapid diagnostic tests in rural Ghana. Table S2. Home management of fevers in children under-five: a cluster randomized controlled trial in southern Ghana. Table S3. Assessments of male involvement in family planning decision making and practice and its influence on the uptake of family planning in the Dangme West district. Table S4. Examination of the TB enablers package in the Dodowa sub-district of the Dangme West district in the Greater Accra region of Ghana. Table S5. Mutual health organizations (MHOâ  s) in Ghana and implications for improving the success of health insurance in Ghana. (ODT 59.6 kb)
DOI: 10.6084/m9.figshare.c.3810235_d1.v1
title: Additional file 1: of Identification of the flotillin-1/2 heterocomplex as a target of autoantibodies in bona fide multiple sclerosis

description: Novel antibody against flotillin. (ZIP 138728 kb).
DOI: 10.6084/m9.figshare.c.3810235_d1
title: Additional file 1: of Identification of the flotillin-1/2 heterocomplex as a target of autoantibodies in bona fide multiple sclerosis

description: Novel antibody against flotillin. (ZIP 138728 kb).
DOI: 10.15468/dl.pjqefk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma mavortium stebbinsi Lowe, 1954)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039425-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3810523_d8.v1
title: Additional file 3: Table S1. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Summary of selected promoter regions and PCC values for individual members in Os1-CysPrxA and Os1-CysPrxB groups. (ODS 16Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d8
title: Additional file 3: Table S1. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Summary of selected promoter regions and PCC values for individual members in Os1-CysPrxA and Os1-CysPrxB groups. (ODS 16Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d10.v1
title: Additional file 5: Table S2. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Summary of 25 CREs uniquely identified in Os1-CysPrxA group compared with Os1-CysPrxB group. (ODS 16Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d11.v1
title: Additional file 6: Table S3. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Detailed promoter regions of 25 CREs uniquely identified in Os1-CysPrxA group compared with Os1-CysPrxB group. (ODS 87Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d10
title: Additional file 5: Table S2. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Summary of 25 CREs uniquely identified in Os1-CysPrxA group compared with Os1-CysPrxB group. (ODS 16Â kb)
DOI: 10.15468/dl.arcvq9
title: Occurrence Download

description: A dataset containing 616 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scytalopus novacapitalis Sick, 1958"
 ]
}

 The dataset includes 616 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039426-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3810523_d12.v1
title: Additional file 7: Table S4. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Summary of CREs described in Fig. 4. (ODS 13Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d11
title: Additional file 6: Table S3. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Detailed promoter regions of 25 CREs uniquely identified in Os1-CysPrxA group compared with Os1-CysPrxB group. (ODS 87Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d13.v1
title: Additional file 8: Table S5. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Summary of 10 CREs uniquely identified in Os1-CysPrxB group compared with Os1-CysPrxA group. (ODS 14Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d12
title: Additional file 7: Table S4. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Summary of CREs described in Fig. 4. (ODS 13Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d14.v1
title: Additional file 9: Table S6. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Detailed promoter regions of 10 CREs uniquely identified in Os1-CysPrxB group compared with Os1-CysPrxA group. (ODS 87Â kb)
DOI: 10.6084/m9.figshare.c.3810523_d13
title: Additional file 8: Table S5. of Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds

description: Summary of 10 CREs uniquely identified in Os1-CysPrxB group compared with Os1-CysPrxA group. (ODS 14Â kb)
DOI: 10.6084/m9.figshare.c.3812476_d1
title: Additional file 10: Table S3. of Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration

description: Gene set enrichment with GO Biological Processes term. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3812479_d1
title: Additional file 1: of Insights into the Geobacillus stearothermophilus species based on phylogenomic principles

description: Table S1. Lists the bacterial genomes used in this study. Table S2. This spreadsheet contains the ANIm values between each pair of genomes. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3812476_d2.v1
title: Additional file 11: Table S4. of Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration

description: Common genes with Groger et al. study and 200 DE genes. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3812476_d2
title: Additional file 11: Table S4. of Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration

description: Common genes with Groger et al. study and 200 DE genes. (XLSX 32 kb)
DOI: 10.15468/dl.xsz985
title: Occurrence Download

description: A dataset containing 5824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Piranga erythrocephala (Swainson, 1827)"
 ]
}

 The dataset includes 5824 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039428-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rhaz7
title: Occurrence Download

description: A dataset containing 5831 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piranga erythrocephala (Swainson, 1827)"
 ]
}

 The dataset includes 5831 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039427-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3812491_d1.v1
title: Additional file 1: Table S1. of The role of Enterococcus spp. and multidrug-resistant bacteria causing pyogenic liver abscesses

description: Overview of bacterial isolates and their susceptibility profile. (XLSX 68Â kb)
DOI: 10.6084/m9.figshare.c.3812491_d1
title: Additional file 1: Table S1. of The role of Enterococcus spp. and multidrug-resistant bacteria causing pyogenic liver abscesses

description: Overview of bacterial isolates and their susceptibility profile. (XLSX 68Â kb)
DOI: 10.6084/m9.figshare.c.3812680_d1.v1
title: Additional file 1: Tables S1. of Plant manipulation through gall formation constrains amino acid transporter evolution in sap-feeding insects

description: Quality control and assembly statistics for transcriptomes used in analyses. Tables S2. Mitochondrial gene sequences used to generate species-level phylogeny of insects assessed in this study. Tables S3. AAT gene sequences for APC and AAAP gene families for each species assessed in this study. Tables S4. Summary of AAT gene counts per clade for each species assessed in this study. Tables S5. Summary of dS values or overlapping states used to merge transcripts for APC genes. Tables S6. Summary of dS values or overlapping states used to merge transcripts for AAAP genes. (XLSX 204 kb)
DOI: 10.6084/m9.figshare.c.3812680_d1
title: Additional file 1: Tables S1. of Plant manipulation through gall formation constrains amino acid transporter evolution in sap-feeding insects

description: Quality control and assembly statistics for transcriptomes used in analyses. Tables S2. Mitochondrial gene sequences used to generate species-level phylogeny of insects assessed in this study. Tables S3. AAT gene sequences for APC and AAAP gene families for each species assessed in this study. Tables S4. Summary of AAT gene counts per clade for each species assessed in this study. Tables S5. Summary of dS values or overlapping states used to merge transcripts for APC genes. Tables S6. Summary of dS values or overlapping states used to merge transcripts for AAAP genes. (XLSX 204 kb)
DOI: 10.6084/m9.figshare.28054136
title: Supplementary table S1 column description

description: A description, in JSON format, of the columns used in Supplementary table S1 for the October 2024 preprint of "Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny" https://doi.org/10.6084/m9.figshare.27195261
DOI: 10.6084/m9.figshare.28054136.v1
title: Supplementary table S1 column description

description: A description, in JSON format, of the columns used in Supplementary table S1 for the October 2024 preprint of "Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny" https://doi.org/10.6084/m9.figshare.27195261
DOI: 10.6084/m9.figshare.c.3812692_d1.v1
title: Additional file 1: of Greater involvement of HIV-infected peer-mothers in provision of reproductive health services as â  family planning championsâ   increases referrals and uptake of family planning among HIV-infected mothers

description: Data set in Excel. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3812692_d1
title: Additional file 1: of Greater involvement of HIV-infected peer-mothers in provision of reproductive health services as â  family planning championsâ   increases referrals and uptake of family planning among HIV-infected mothers

description: Data set in Excel. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3812668_d4.v1
title: MOESM2 of Identification of G-quadruplex structures that possess transcriptional regulating functions in the Dele and Cdc6 CpG islands

description: Additional file 2. Luciferase reporter assay results of G4 DNA sequences cloned in pGL4.23 vector.