cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14434964.v12
title: Additional file of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes
DOI: 10.6084/m9.figshare.14434964.v15
title: Additional file of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes
DOI: 10.6084/m9.figshare.14434964.v14
title: Additional file of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes
DOI: 10.6084/m9.figshare.14434964.v13
title: Additional file of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes
DOI: 10.6084/m9.figshare.14434937
title: Additional file 1 of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file 1:(Microsoft Excel file) List of significantly drought-regulated genes. Annotation, Log 2 ratio values (treated vs respective control) and Bonferroni P-values are given for the 6,725 probesets displaying a significant change in signal intensity in response to drought in at least one pair comparison (no Log 2 ratio cut-off, t-test, Bonferroni P &lt; 0.05). Red: up regulation, Green: down-regulation, Black: not significant; White: missing value. (XLS 6 MB)
DOI: 10.6084/m9.figshare.14434937.v1
title: Additional file 1 of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file 1:(Microsoft Excel file) List of significantly drought-regulated genes. Annotation, Log 2 ratio values (treated vs respective control) and Bonferroni P-values are given for the 6,725 probesets displaying a significant change in signal intensity in response to drought in at least one pair comparison (no Log 2 ratio cut-off, t-test, Bonferroni P &lt; 0.05). Red: up regulation, Green: down-regulation, Black: not significant; White: missing value. (XLS 6 MB)
DOI: 10.6084/m9.figshare.14434943
title: Additional file 3 of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file 3:(Microsoft Excel file) Functional annotation enrichment analysis (iGA) among differentially expressed genes. For each functional class, annotation, probability of change (PC), and number of changed versus total group numbers (%) are given as well as composition in genes (The Populus genome v1.1). (XLS 323 KB)
DOI: 10.6084/m9.figshare.14434946
title: Additional file 4 of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file 4:(Microsoft Excel file) Gene lists of DCA clusters. Distinct table is given for each DCA run. Table S4-A gives the 3,515 probesets that were significantly regulated at least twice across the twelve conditions (t-test, Bonferroni P &lt; 0.05); Table S4-B gives the 652 probesets that were significantly regulated in mature leaves, at least twice across the six combinations; and Table S4-C gives the 2,410 probesets that were significantly regulated in root apices at least twice across the six combinations. DCA cluster assignation, gene annotation, Log 2 ratio values (treated vs respective control) and Bonferroni P-values are given. Red: up regulation, Green: down-regulation, Black: not significant; White: missing value. (XLS 5 MB)
DOI: 10.6084/m9.figshare.14434946.v1
title: Additional file 4 of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file 4:(Microsoft Excel file) Gene lists of DCA clusters. Distinct table is given for each DCA run. Table S4-A gives the 3,515 probesets that were significantly regulated at least twice across the twelve conditions (t-test, Bonferroni P &lt; 0.05); Table S4-B gives the 652 probesets that were significantly regulated in mature leaves, at least twice across the six combinations; and Table S4-C gives the 2,410 probesets that were significantly regulated in root apices at least twice across the six combinations. DCA cluster assignation, gene annotation, Log 2 ratio values (treated vs respective control) and Bonferroni P-values are given. Red: up regulation, Green: down-regulation, Black: not significant; White: missing value. (XLS 5 MB)
DOI: 10.6084/m9.figshare.14434949.v1
title: Additional file 5 of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file 5:(Microsoft Excel file) Expression and regulation of drought-responsive genes in other Populus species. For the set of unique gene models that was delineated from the list of drought-responsive probesets, the Populus gene names (v1.1), the annotations and the AGI codes are given as well as the gene expression and regulation patterns in our study and in the literature. Based on relative expression under optimal condition, each gene was assigned to subsets. L: leaf, R: root, X: not regulated, S: subset. (XLS 1 MB)
DOI: 10.6084/m9.figshare.14434949
title: Additional file 5 of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file 5:(Microsoft Excel file) Expression and regulation of drought-responsive genes in other Populus species. For the set of unique gene models that was delineated from the list of drought-responsive probesets, the Populus gene names (v1.1), the annotations and the AGI codes are given as well as the gene expression and regulation patterns in our study and in the literature. Based on relative expression under optimal condition, each gene was assigned to subsets. L: leaf, R: root, X: not regulated, S: subset. (XLS 1 MB)
DOI: 10.6084/m9.figshare.14434952
title: Additional file 6 of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file 6:(Microsoft Excel file) Comparison of poplar drought-responsive genes with the transcriptional program induced by KIN10, by starvation conditions and antagonized by sugar availability[39]. The probesets identifiers, the Populus gene names (v1.1), the annotations and the AGI codes are given for all drought-responsive genes those orthologs were regulated in response to energy deficit in arabidopsis. Genes are gathered according to biological processes. Numbers of regulated genes per pair comparison are summed. Yellow: drought-regulation consistent with sugar feeding in arabidopsis: Blue: drought-regulation consistent with energy deficit in arabidopsis. (XLS 79 KB)
DOI: 10.6084/m9.figshare.14434952.v1
title: Additional file 6 of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file 6:(Microsoft Excel file) Comparison of poplar drought-responsive genes with the transcriptional program induced by KIN10, by starvation conditions and antagonized by sugar availability[39]. The probesets identifiers, the Populus gene names (v1.1), the annotations and the AGI codes are given for all drought-responsive genes those orthologs were regulated in response to energy deficit in arabidopsis. Genes are gathered according to biological processes. Numbers of regulated genes per pair comparison are summed. Yellow: drought-regulation consistent with sugar feeding in arabidopsis: Blue: drought-regulation consistent with energy deficit in arabidopsis. (XLS 79 KB)
DOI: 10.6084/m9.figshare.14434943.v1
title: Additional file 3 of Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

description: Additional file 3:(Microsoft Excel file) Functional annotation enrichment analysis (iGA) among differentially expressed genes. For each functional class, annotation, probability of change (PC), and number of changed versus total group numbers (%) are given as well as composition in genes (The Populus genome v1.1). (XLS 323 KB)
DOI: 10.6084/m9.figshare.14434576.v24
title: Additional file of Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

description: Additional file of Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress
DOI: 10.6084/m9.figshare.14434576.v25
title: Additional file of Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

description: Additional file of Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress
DOI: 10.6084/m9.figshare.14434549
title: Additional file 1 of Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

description: Additional File 1:Table S1. List of genes up-regulated during Cr (VI) stress in rice. (XLS 179 KB)
DOI: 10.6084/m9.figshare.14434549.v1
title: Additional file 1 of Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

description: Additional File 1:Table S1. List of genes up-regulated during Cr (VI) stress in rice. (XLS 179 KB)
DOI: 10.6084/m9.figshare.14434552.v1
title: Additional file 2 of Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

description: Additional File 2:Table S2. List of genes down-regulated during Cr (VI) stress in rice. (XLS 242 KB)
DOI: 10.6084/m9.figshare.14434552
title: Additional file 2 of Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

description: Additional File 2:Table S2. List of genes down-regulated during Cr (VI) stress in rice. (XLS 242 KB)
DOI: 10.6084/m9.figshare.14434468.v12
title: Additional file of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

description: Additional file of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06
DOI: 10.6084/m9.figshare.14434468.v18
title: Additional file of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

description: Additional file of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06
DOI: 10.6084/m9.figshare.14434441
title: Additional file 1 of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

description: Additional file 1:Isolates. (XLS 38 KB)
DOI: 10.6084/m9.figshare.14434441.v1
title: Additional file 1 of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

description: Additional file 1:Isolates. (XLS 38 KB)
DOI: 10.6084/m9.figshare.14434459
title: Additional file 7 of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

description: Additional file 7:The 1190 genes common to N. meningitidis, N. gonorrhoeae and N. lactamica. (XLS 426 KB)
DOI: 10.6084/m9.figshare.14434462
title: Additional file 8 of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

description: Additional file 8:CDSs absent from N. lactamica 020-06. (XLS 62 KB)
DOI: 10.6084/m9.figshare.14434459.v1
title: Additional file 7 of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

description: Additional file 7:The 1190 genes common to N. meningitidis, N. gonorrhoeae and N. lactamica. (XLS 426 KB)
DOI: 10.6084/m9.figshare.14434462.v1
title: Additional file 8 of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

description: Additional file 8:CDSs absent from N. lactamica 020-06. (XLS 62 KB)
DOI: 10.6084/m9.figshare.14434468.v19
title: Additional file of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

description: Additional file of Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06
DOI: 10.6084/m9.figshare.14446440.v1
title: Force field parameters for amiloride analogs

description: Force field parameters for amiloride analogs (Nehad El Salamoun et al. to be submitted 2021)
DOI: 10.6084/m9.figshare.14446440
title: Force field parameters for amiloride analogs

description: Force field parameters for amiloride analogs (Nehad El Salamoun et al. to be submitted 2021)
DOI: 10.6084/m9.figshare.12874545.v11
title: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

description: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
DOI: 10.6084/m9.figshare.12874545.v12
title: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

description: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
DOI: 10.6084/m9.figshare.12874545.v13
title: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

description: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
DOI: 10.6084/m9.figshare.12874545.v14
title: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

description: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
DOI: 10.6084/m9.figshare.14446560.v16
title: Additional file of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization

description: Additional file of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization
DOI: 10.6084/m9.figshare.12874545.v15
title: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

description: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
DOI: 10.6084/m9.figshare.14446551
title: Additional file 7 of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization

description: Additional file 7:Genes classified as absent/divergent from S. lividans 66 relative to S. coelicolor. (TXT 4 KB)
DOI: 10.6084/m9.figshare.14446551.v1
title: Additional file 7 of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization

description: Additional file 7:Genes classified as absent/divergent from S. lividans 66 relative to S. coelicolor. (TXT 4 KB)
DOI: 10.6084/m9.figshare.14446554
title: Additional file 8 of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization

description: Additional file 8:Genes classified as absent/divergent from S. lividans TK24 relative to S. coelicolor. (TXT 6 KB)
DOI: 10.6084/m9.figshare.14446557
title: Additional file 9 of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization

description: Additional file 9:Genes classified as absent/divergent from S. lividans TK24 only. (XLS 36 KB)
DOI: 10.6084/m9.figshare.14446560
title: Additional file of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization

description: Additional file of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization
DOI: 10.6084/m9.figshare.14446554.v1
title: Additional file 8 of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization

description: Additional file 8:Genes classified as absent/divergent from S. lividans TK24 relative to S. coelicolor. (TXT 6 KB)
DOI: 10.6084/m9.figshare.14446560.v18
title: Additional file of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization

description: Additional file of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization
DOI: 10.6084/m9.figshare.14446557.v1
title: Additional file 9 of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization

description: Additional file 9:Genes classified as absent/divergent from S. lividans TK24 only. (XLS 36 KB)
DOI: 10.6084/m9.figshare.14446560.v17
title: Additional file of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization

description: Additional file of Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization
DOI: 10.6084/m9.figshare.12874602.v7
title: Additional file of A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred population

description: Additional file of A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred population
DOI: 10.6084/m9.figshare.12874581
title: Additional file 1 of A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred population

description: Additional file 1:List of annotated genes within 2-LOD support regions of the QTL. (XLS 76 KB)
DOI: 10.6084/m9.figshare.12874581.v1
title: Additional file 1 of A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred population

description: Additional file 1:List of annotated genes within 2-LOD support regions of the QTL. (XLS 76 KB)
DOI: 10.6084/m9.figshare.12878443.v20
title: Additional file of High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum

description: Additional file of High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum
DOI: 10.6084/m9.figshare.12875040
title: Additional file of Preferential regulation of miRNA targets by environmental chemicals in the human genome

description: Additional file of Preferential regulation of miRNA targets by environmental chemicals in the human genome
DOI: 10.6084/m9.figshare.12875037
title: Additional file 9 of Preferential regulation of miRNA targets by environmental chemicals in the human genome

description: Additional file 9:Table S5: The 14 topological modules with their miRNAs and ECs. The number in the bracket indicates the number of miRNAs associated with the corresponding disease categories. (XLSX 63 KB)
DOI: 10.6084/m9.figshare.12875037.v1
title: Additional file 9 of Preferential regulation of miRNA targets by environmental chemicals in the human genome

description: Additional file 9:Table S5: The 14 topological modules with their miRNAs and ECs. The number in the bracket indicates the number of miRNAs associated with the corresponding disease categories. (XLSX 63 KB)
DOI: 10.6084/m9.figshare.12875040.v35
title: Additional file of Preferential regulation of miRNA targets by environmental chemicals in the human genome

description: Additional file of Preferential regulation of miRNA targets by environmental chemicals in the human genome
DOI: 10.6084/m9.figshare.14446581.v1
title: Additional file 2 of High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum

description: Additional file 2:SNPs between HB3 and Dd2(XLS 2 MB)
DOI: 10.6084/m9.figshare.14446581
title: Additional file 2 of High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum

description: Additional file 2:SNPs between HB3 and Dd2(XLS 2 MB)
DOI: 10.6084/m9.figshare.12877963.v13
title: Additional file of Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

description: Additional file of Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize
DOI: 10.6084/m9.figshare.12877963.v14
title: Additional file of Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

description: Additional file of Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize
DOI: 10.6084/m9.figshare.12877963.v16
title: Additional file of Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

description: Additional file of Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize