cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17031728
title: Supplementary Material for: The Long Noncoding RNA-H19 Mediates the Progression of Fibrosis from Acute Kidney Injury to Chronic Kidney Disease by Regulating the miR-196a/Wnt/β-Catenin Signaling

description: <b><i>Introduction:</i></b> Long noncoding RNAs (lncRNAs) have been reported to be involved in the occurrence and development of various diseases. This study was to investigate the role of lncRNA-H19 in the transition from acute kidney injury (AKI) to chronic kidney disease (CKD) and its underlying mechanism. <b><i>Methods:</i></b> Bilateral renal pedicle ischemia-reperfusion injury (IRI) was used to establish the IRI-AKI model in C57BL/6 mice. The expression levels of lncRNA-H19, miR-196a-5p, α-SMA, collagen I, Wnt1, and β-catenin in mouse kidney tissues and fibroblasts were determined by quantitative real-time PCR and Western blotting. The degree of renal fibrosis was evaluated by hematoxylin and eosin staining. The interaction between lncRNA-H19 and miR-196a-5p was verified by bioinformatics analysis and luciferase reporter assay. Immunohistochemistry and immunofluorescence were used to evaluate the expression of α-SMA and collagen I in kidney tissues and fibroblasts of mice. <b><i>Results:</i></b> lncRNA-H19 is upregulated, and miR-196a-5p is downregulated in kidney tissues of IRI mice. Moreover, miR-196a-5p is a direct target of lncRNA-H19. lncRNA-H19 overexpression promotes kidney fibrosis and activates fibroblasts during AKI-CKD development, while miR-196a-5p overexpression reversed these effects in vitro. Furthermore, lncRNA-H19 overexpression significantly upregulates Wnt1 and β-catenin expression in kidney tissues and fibroblasts of IRI mice, while miR-196a-5p overexpression downregulates Wnt1 and β-catenin expression in kidney tissues and fibroblasts of IRI mice. <b><i>Conclusion:</i></b> lncRNA-H19 induces kidney fibrosis during AKI-CKD by regulating the miR-196a-5p/Wnt/β-catenin signaling pathway.
DOI: 10.5281/zenodo.5706789
title: The quest for successful Atlantic salmon restoration: perspectives, priorities, and maxims

description: Data supporting publication https://academic.oup.com/icesjms/advance-article/doi/10.1093/icesjms/fsab201/6425092?casa_token=nTwNIhkC314AAAAA:FBK2iqeXsVgELsFGUxQAMjyWoOU6p2uJMe9UZ5ynGrdWIH6JxDSqN16EanyKWvZdtf1F3KdN4RW9Vg
DOI: 10.5281/zenodo.5706788
title: The quest for successful Atlantic salmon restoration: perspectives, priorities, and maxims

description: Data supporting publication https://academic.oup.com/icesjms/advance-article/doi/10.1093/icesjms/fsab201/6425092?casa_token=nTwNIhkC314AAAAA:FBK2iqeXsVgELsFGUxQAMjyWoOU6p2uJMe9UZ5ynGrdWIH6JxDSqN16EanyKWvZdtf1F3KdN4RW9Vg
DOI: 10.5517/ccdc.csd.cc27tjf1
title: CCDC 2080113: Experimental Crystal Structure Determination

description: Related Article: Ryosuke Masuda, Satoru Kuwano, Kei Goto|2021|J.Org.Chem.|86|14433|doi:10.1021/acs.joc.1c01252
DOI: 10.25345/c58z92
title: MassIVE MSV000088398 - Proteomic Atlas of the Human Brain in Alzheimer’s Disease
title: Here we provide a proteomic resource comprising nine functionally distinct sections from three individuals clinically diagnosed with Alzheimer's disease, across a spectrum of disease progression. Using state-of-the-art mass spectrometry, we identify a core brain proteome that exhibits only small variance in expression, accompanied by a group of proteins that are highly differentially expressed in individual sections and broader regions. AD affected tissue exhibited slightly elevated levels of tau protein with similar relative expression to factors associated with the AD pathology. Substantial differences were identified between previous proteomic studies of mature adult brains and our aged cohort. Our findings suggest considerable value in examining specifically the brain proteome of aged human populations, with the goal of understanding ways in which neurological changes occur past full maturity. This resource can serve as a guide, as well as a point of reference for how specific regions of the brain are affected by aging.
DOI: 10.6084/m9.figshare.17031737
title: Collected Secondary Data

description: Secondary data was collected on the internet. Many publications, government and organizational reports, and journal articles are the component of thus dataset
DOI: 10.6084/m9.figshare.17031737.v1
title: Collected Secondary Data

description: Secondary data was collected on the internet. Many publications, government and organizational reports, and journal articles are the component of thus dataset
DOI: 10.6084/m9.figshare.16995562
title: data

description: The first subset was created by digitizing and curating the seminal report of Amerine and Winkler (1944), which provided grape harvest dates (GHDs), the quality of musts and wines, and wine tasting notes for 148 cultivars from 1935-1941 across five contrasting climatic regions of California. To put this dataset into a climate change context, we collected GHDs and must<sup> o</sup>Brix records from 1994 to 2018 for four representative cultivars in one of the five studied regions (Napa). Finally, we integrated meteorological data of the five regions during 1911-2018 and calculated bioclimatic indices important for grape. The resulting database is unique and valuable for assessing the fitness between cultivars across environments in order to mitigate the effects of climate change.
DOI: 10.6084/m9.figshare.16995562.v1
title: data

description: The first subset was created by digitizing and curating the seminal report of Amerine and Winkler (1944), which provided grape harvest dates (GHDs), the quality of musts and wines, and wine tasting notes for 148 cultivars from 1935-1941 across five contrasting climatic regions of California. To put this dataset into a climate change context, we collected GHDs and must<sup> o</sup>Brix records from 1994 to 2018 for four representative cultivars in one of the five studied regions (Napa). Finally, we integrated meteorological data of the five regions during 1911-2018 and calculated bioclimatic indices important for grape. The resulting database is unique and valuable for assessing the fitness between cultivars across environments in order to mitigate the effects of climate change.
DOI: 10.5281/zenodo.5706952
title: Symbiosis Bacteria with Nizamuddinia Zanardinii and Chiton Chiton Lamyi

description: This study aimed to investigate the antagonistic and antimicrobial properties of symbiotic bacteria isolated from <em>Chiton Lamayi</em> and <em>Nizamuddinia Zanardinii</em> against human and marine pathogens.
DOI: 10.5281/zenodo.5706951
title: Symbiosis Bacteria with Nizamuddinia Zanardinii and Chiton Chiton Lamyi

description: This study aimed to investigate the antagonistic and antimicrobial properties of symbiotic bacteria isolated from <em>Chiton Lamayi</em> and <em>Nizamuddinia Zanardinii</em> against human and marine pathogens.
DOI: 10.48512/xcv8467840
title: MesoRAD v.1.4

description: The Mesoamerican Radiocarbon (MesoRAD) database compiles radiocarbon dates and isotopic data from archaeological sites in across Mesoamerica. The initial dataset from MesoRAD is a compilation of 14C dates from the Maya lowlands. We will be expanding the database to other parts of Mesoamerica soon. If you would like to submit your data to MesoRAD, please visit our website for more information: http://www.mesorad.com
DOI: 10.15468/jj3cnf
title: Further notes on the genus Ocellarnaca Gorochov, 2004 (Orthoptera Gryllacrididae) from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shi, Fu-Ming, Zhu, Qi-Di (2021): Further notes on the genus Ocellarnaca Gorochov, 2004 (Orthoptera Gryllacrididae) from China. Zootaxa 5068 (3): 428-434, DOI: https://doi.org/10.11646/zootaxa.5068.3.7
DOI: 10.6084/m9.figshare.17031764
title: STROBE-checklist-v4-cohort_Nur Samsu.doc

description: STROBE Statement for Manuscript Predictors of In-Hospital Mortality of Septic VS Non-Septic Acute Kidney Injury Patients: An Observational Cohort Study<br>
DOI: 10.6084/m9.figshare.17031764.v1
title: STROBE-checklist-v4-cohort_Nur Samsu.doc

description: STROBE Statement for Manuscript Predictors of In-Hospital Mortality of Septic VS Non-Septic Acute Kidney Injury Patients: An Observational Cohort Study<br>
DOI: 10.5281/zenodo.5707095
title: waterfowl and shorebirds in Pozm and Bahu bays

description: This study was aimed to consider the abundance and biodiversity of waterfowl and shorebirds in the Pozm and Bahu bays located in Sistan and Baluchestan province from mid-January to mid-February during 2012-2016.
DOI: 10.5281/zenodo.5707094
title: waterfowl and shorebirds in Pozm and Bahu bays

description: This study was aimed to consider the abundance and biodiversity of waterfowl and shorebirds in the Pozm and Bahu bays located in Sistan and Baluchestan province from mid-January to mid-February during 2012-2016.
DOI: 10.6084/m9.figshare.17031821
title: Supplementary Material for: Trimethylamine-N-Oxide Aggravates Kidney Injury via Activation of p38/MAPK Signaling and Upregulation of HuR

description: <b><i>Background:</i></b> Trimethylamine-N-oxide (TMAO) is an intestinal metabolic toxin, which is produced by gut flora via metabolizing high-choline foods. TMAO is known to increase the risk of atherosclerosis and cardiovascular events in chronic kidney disease (CKD) patients. <b><i>Objectives:</i></b> The objective of this study was to explore the role and mechanism of TMAO aggravating kidney injury. <b><i>Method:</i></b> We used the five-sixths nephrectomy (5/6 Nx)-induced CKD rats to investigate whether TMAO could aggravate kidney damage and its possible mechanisms. Six weeks after the operation, the two groups of 5/6 Nx rats were subjected to intraperitoneal injection with 2.5% glucose peritoneal dialysis fluid (2.5% PDF) and 2.5% PDF plus TMAO 20 mg/kg/day. <b><i>Results:</i></b> In this study, we provided evidence showing TMAO significantly aggravated renal failure as well as inflammatory cell infiltration and in five-sixths nephrectomy-induced CKD rats. We found that TMAO could upregulate inflammatory factors including MCP-1, TNF-α, IL-6, IL-1β, and IL-18 by activating p38 phosphorylation and upregulation of human antigen R. TMAO could aggravate oxidative stress by upregulating NOX4 and downregulating SOD. The result also confirmed that TMAO promoted NLRP3 inflammasome formation as well as cleaved caspase-1 and IL-1β activation in the kidney tissue. <b><i>Conclusions:</i></b> Taken together, the present study validates TMAO as a pro-inflammatory factor that causes renal inflammatory injury and renal function impairment. Inhibition of TMAO synthesis or promoting its clearance may be a potential therapeutic approach of CKD in the future.
DOI: 10.5281/zenodo.5707123
title: msd-errors - Data for the LLZO figure

description: Data for the figure showing the diffusion and Arrhenius plots for a short simulation of LLZO. <br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5707124
title: msd-errors - Data for AgCrSe2 figures

description: Data for the figures Results of the analysis of AgCrSe2 systems by kinisi at a series of temperatures.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5647374
title: Data set for "Investigating the structural changes due to adenosine methylation of ORF50 in Kaposi's sarcoma-associated herpes virus"

description: Data set containing the pathsample databases, and analysis scripts used
DOI: 10.5281/zenodo.5647373
title: Data set for "Investigating the structural changes due to adenosine methylation of ORF50 in Kaposi's sarcoma-associated herpes virus"

description: Data set containing the pathsample databases, and analysis scripts used
DOI: 10.5281/zenodo.5707125
title: msd-errors - Data for variance and covariance figure

description: Data for a figure that presents the variance and covariance for a true random walk. There is a comparison shown between the numerical result from 1024 unique random walks and the analysis, by kinisi, of the same 1024 random walks.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.6084/m9.figshare.14316132.v1
title: Environmental potentials of asphalt mixtures fabricated with red mud and fly ash

description: Several studies evaluated the feasibility of using residues to compose asphalt mixtures. However, the demand for treatments are often neglected in determining the environmental impacts. This study aims to elucidate the decision-making process over the application of residues (e.g., red mud and fly ash) to produce asphalt mixtures. For comparison purposes, limestone and dolomite are used as reference fillers. The cradle-to-gate approach is applied within three scenarios. In the first scenario, the treatment of the residues is included in the modelling, the second excludes treatment, and the third scenario evaluates the environmental impacts of the residues deposited in landfills. To perform the analysis, indicators such as Global Warming Potential, Acidification, and Cumulative Energy Demand are applied. The results show that the treatment provided to the residues strongly influences the environmental impacts of the production of asphalt mixtures and may be crucial to define the feasibility of the residues application.
DOI: 10.6084/m9.figshare.14316132
title: Environmental potentials of asphalt mixtures fabricated with red mud and fly ash

description: Several studies evaluated the feasibility of using residues to compose asphalt mixtures. However, the demand for treatments are often neglected in determining the environmental impacts. This study aims to elucidate the decision-making process over the application of residues (e.g., red mud and fly ash) to produce asphalt mixtures. For comparison purposes, limestone and dolomite are used as reference fillers. The cradle-to-gate approach is applied within three scenarios. In the first scenario, the treatment of the residues is included in the modelling, the second excludes treatment, and the third scenario evaluates the environmental impacts of the residues deposited in landfills. To perform the analysis, indicators such as Global Warming Potential, Acidification, and Cumulative Energy Demand are applied. The results show that the treatment provided to the residues strongly influences the environmental impacts of the production of asphalt mixtures and may be crucial to define the feasibility of the residues application.
DOI: 10.6084/m9.figshare.17012555
title: Analysis of Fungi Diversity in the Natural Fermentation of 'Hongyang' Kiwifruit

description: Fungal dynamic changes in the natural fermentation broth of 'Hongyang' kiwifruit
DOI: 10.6084/m9.figshare.14985648
title: The dual role of earwigs (Dermaptera) in winter grain crops in Australia

description: Data associated with Binns et al. (2021) "The dual role of earwigs (Dermaptera) in winter grain crops in Australia":<br>Earwig species have been observed as an irregular pest of increasing concern to farmers growing winter grain crops in Australia over the past decade. In this study, we tested how abiotic and biotic factors influence the feeding behaviour of earwig species. Studies were conducted with two Australian native species, <i>Labidura truncata</i> and <i>Nala lividipes</i>, and the introduced European earwig, <i>Forficula auricularia</i>. We constructed field-based exclusion plots that prevented <i>F. auricularia</i> from moving in or out of a small area of canola. We monitored <i>F. auricularia</i> activity and the feeding damage to canola plants throughout the winter growing season in 2019. In the laboratory, we established microcosms containing crop seedlings, as well as aphids as an alternate food source, to further examine the feeding behaviour of all three species. The native earwigs <i>L. truncata</i> and <i>N. lividipes</i> did not cause any damage to canola or wheat but were found to actively consume aphids when present<i>. </i>We conclude that these species are unlikely to cause significant (economic levels) of pest damage in a field environment. In the microcosm trial,<i> Forficula auricularia</i> caused considerable damage to canola seedlings and consumed aphids readily. We also found that <i>F. auricularia</i> caused damage to canola seedlings early in the winter growing season in the field. However, by the end of the season, <i>F. auricularia</i> presence was associated with increased canola biomass. <i>Forficula auricularia</i> can play an important role in the control of aphids, even in low densities. Furthermore, <i>F. auricularia</i> did not damage canola until all the aphids nearby are consumed. The field and laboratory studies, taken together, show that <i>F. auricularia</i> can be an important predator of aphid pests in canola, indicating a dual role of this species as both a pest and beneficial in winter grain systems.
DOI: 10.6084/m9.figshare.14985648.v1
title: The dual role of earwigs (Dermaptera) in winter grain crops in Australia

description: Data associated with Binns et al. (2021) "The dual role of earwigs (Dermaptera) in winter grain crops in Australia":<br>Earwig species have been observed as an irregular pest of increasing concern to farmers growing winter grain crops in Australia over the past decade. In this study, we tested how abiotic and biotic factors influence the feeding behaviour of earwig species. Studies were conducted with two Australian native species, <i>Labidura truncata</i> and <i>Nala lividipes</i>, and the introduced European earwig, <i>Forficula auricularia</i>. We constructed field-based exclusion plots that prevented <i>F. auricularia</i> from moving in or out of a small area of canola. We monitored <i>F. auricularia</i> activity and the feeding damage to canola plants throughout the winter growing season in 2019. In the laboratory, we established microcosms containing crop seedlings, as well as aphids as an alternate food source, to further examine the feeding behaviour of all three species. The native earwigs <i>L. truncata</i> and <i>N. lividipes</i> did not cause any damage to canola or wheat but were found to actively consume aphids when present<i>. </i>We conclude that these species are unlikely to cause significant (economic levels) of pest damage in a field environment. In the microcosm trial,<i> Forficula auricularia</i> caused considerable damage to canola seedlings and consumed aphids readily. We also found that <i>F. auricularia</i> caused damage to canola seedlings early in the winter growing season in the field. However, by the end of the season, <i>F. auricularia</i> presence was associated with increased canola biomass. <i>Forficula auricularia</i> can play an important role in the control of aphids, even in low densities. Furthermore, <i>F. auricularia</i> did not damage canola until all the aphids nearby are consumed. The field and laboratory studies, taken together, show that <i>F. auricularia</i> can be an important predator of aphid pests in canola, indicating a dual role of this species as both a pest and beneficial in winter grain systems.
DOI: 10.25934/pr00005738.1
title: Available IPD datapackage for study 'A Randomized, Open-label Phase III Intergroup Study: Effect of Adding Bevacizumab to Cross Over Fluoropyrimidine Based Chemotherapy (CTx) in Patients With Metastatic Colorectal Cancer and Disease Progression Under First-line Standard CTx/Bevacizumab Combination'

description: This study will evaluate the efficacy and safety of adding bevacizumab to crossover fluoropyrimidine-based chemotherapy in patients with metastatic colorectal cancer who have experienced disease progression under first line treatment with standard chemotherapy plus bevacizumab. Participants will receive chemotherapy alone, or in combination with bevacizumab. The anticipated time on study treatment is until disease progression or unacceptable toxicity occurs. Participants are allowed to continue on bevacizumab, even after stopping chemotherapy.
DOI: 10.5281/zenodo.5707130
title: msd-errors - Data for diffusion coefficient and offset figures

description: Data for a figure that shows the distributions of the mean and varance of the diffusion coefficient and offset that are found from the analysis of 1024 unique random walks using kinisi. This is performed for both a truely random walk and a temporally anti-correlated random walk.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5707110
title: ionosonde data in Haikou city

description: some foF2 and H'F data collected in HaiKou city
DOI: 10.5281/zenodo.5707109
title: ionosonde data in Haikou city

description: some foF2 and H'F data collected in HaiKou city
DOI: 10.5281/zenodo.5706102
title: Data and script: Catchment scale deforestation increases the uniqueness of subtropical stream communities

description: These are datasets on benthic diatom and insect communities sampled in 100 streams along a gradient of land use intensification, ranging from streams in pristine forests to agricultural catchments in southeast subtropical Brazil. Data also include information on instream and land-use variables. In addition to the datasets, we also provide the R codes used to investigate whether compositional uniqueness (LCBD) and species contribution to beta diversity (SCBD) of stream diatoms and insects can be predicted by instream and land-use characteristics and by species traits and taxonomic relatedness, respectively.
description: This study was funded by grant n° 2013/50424-1 from the São Paulo Research Foundation (FAPESP) to TS.
DOI: 10.5281/zenodo.5706101
title: Data and script: Catchment scale deforestation increases the uniqueness of subtropical stream communities

description: These are datasets on benthic diatom and insect communities sampled in 100 streams along a gradient of land use intensification, ranging from streams in pristine forests to agricultural catchments in southeast subtropical Brazil. Data also include information on instream and land-use variables. In addition to the datasets, we also provide the R codes used to investigate whether compositional uniqueness (LCBD) and species contribution to beta diversity (SCBD) of stream diatoms and insects can be predicted by instream and land-use characteristics and by species traits and taxonomic relatedness, respectively.
description: This study was funded by grant n° 2013/50424-1 from the São Paulo Research Foundation (FAPESP) to TS.
DOI: 10.6084/m9.figshare.12850784
title: Cross-cultural adaptation and validation of the Swallowing Disturbance Questionnaire and the Sialorrhea Clinical Scale in Portuguese patients with Parkinson’s disease

description: To date, no valid outcome measure has been developed in European Portuguese (EP) to evaluate the Parkinsons’ Disease (PD) patients' (PwP) reports regarding their swallowing disturbances. The aim of this study was to translate and cross-culturally adapt the Swallowing Disturbance Questionnaire (SDQ) and the Sialorrhea Clinical Scale for PD (SCS-PD) into EP and to determine its clinimetric properties in PwP. The original English SDQ and SCS-PD versions were cross-culturally adapted following recommendations established in international guidelines. The validation process involved 75 PwP and 65 healthy sex- and age-matched participants. The EP versions of the SDQ and SCS-PD are equivalent to the original versions (content, depth, and scoring). Statistical analyses for the SDQ tool revealed good feasibility (missing data &lt;5%), acceptability (no floor or ceiling effects), excellent internal consistency (Cronbach´s α = 0.95), good construct validity (78.5% revealed large to moderate loadings), moderate convergent validity (<i>r</i> = 0.60), good divergent validity (<i>r</i> = 0.40), good known-groups validity (<i>p</i>-value r = 0.78), good divergent validity (<i>r</i> = 0.39), good known groups validity (<i>p</i>-value &lt; .05) and a fair sensitivity and specificity (AUC = 0.704). The EP versions of the SDQ and SCS-PD maintained the characteristics of the original versions and therefore consistent tools to be used in PwP.