cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20375/0000-000e-7589-4
title: Gotthelf_Erdbeerimareili.xml.tei.xml.xmi
DOI: 10.20375/0000-000e-758a-3
title: Montemajor_Gefangene.xml.tei.xml.xmi
DOI: 10.20375/0000-000e-758b-2
title: Raabe_Galeere.xml.tei.xml.xmi
DOI: 10.20375/0000-000e-758c-1
title: Stifter_Bergmilch.xml.tei.xml.xmi
DOI: 10.20375/0000-000e-758d-0
title: Marlitt_Die zwölf Apostel.xml.tei.xml.xmi
DOI: 10.20375/0000-000e-758e-f
title: Storm_Malerarbeit.xml.xmi
DOI: 10.20375/0000-000e-758f-e
title: Ungern-Sternberg_Doppelgaengerin.xml.tei.xml.xmi
DOI: 10.20375/0000-000e-7590-b
title: Droste-Huelshoff_Judenbuche.xml.xmi
DOI: 10.20375/0000-000e-7591-a
title: Eckstein_Leutturm.xml.tei.xml.xmi
DOI: 10.20375/0000-000e-7586-7
title: 6 Annotierte Texte V1

description: Texte, die mit Formen der Redewiedergabe annotiert wurden. Die Annotation fand statt im STWR-View des Annotationstools ATHEN (Markus Krug, Ngoc Duyen Tanja Tu, Lukas Weimer, u. a.: Annotation and beyond – Using ATHEN, in: Konferenzabstracts, Köln 2018, S. 19–21.)
DOI: 10.20375/0000-000e-7594-7
title: Montemajor_Gefangene.xmi
DOI: 10.20375/0000-000e-7595-6
title: Grillparzer_Spielmannpielmann.xmi
DOI: 10.20375/0000-000e-7596-5
title: Droste-Huelshoff_Judenbuche.xmi
DOI: 10.20375/0000-000e-7597-4
title: Storm_Malerarbeit.xmi
DOI: 10.20375/0000-000e-7598-3
title: Raabe_Galeere.xmi
DOI: 10.20375/0000-000e-7599-2
title: Ungern-Sternberg_Doppelgaengerin.xmi
DOI: 10.20375/0000-000e-7593-8
title: xmi

description: Annotierte Texte in einer überarbeiteten Version. Der Ordner enthält nur jene Texte, in denen in aufgrund einer Änderung des Annotationssystems Anpassungen nötig waren. Format: xmi
DOI: 10.20375/0000-000e-759b-0
title: Grillparzer_Spielmannpielmann.tei.xml
DOI: 10.20375/0000-000e-759c-f
title: Droste-Huelshoff_Judenbuche.tei.xml
DOI: 10.20375/0000-000e-759d-e
title: Montemajor_Gefangene.tei.xml
DOI: 10.20375/0000-000e-759e-d
title: Raabe_Galeere.tei.xml
DOI: 10.20375/0000-000e-759f-c
title: Storm_Malerarbeit.tei.xml
DOI: 10.20375/0000-000e-75a0-9
title: Ungern-Sternberg_Doppelgaengerin.tei.xml
DOI: 10.20375/0000-000e-759a-1
title: tei

description: Annotierte Texte in einer überarbeiteten Version. Der Ordner enthält nur jene Texte, in denen in aufgrund einer Änderung des Annotationssystems Anpassungen nötig waren. Format: TEI XML
DOI: 10.20375/0000-000e-7592-9
title: 7 Annotierte Texte V2

description: Annotierte Texte in einer überarbeiteten Version. Der Ordner enthält nur jene Texte, in denen in aufgrund einer Änderung des Annotationssystems Anpassungen nötig waren.
DOI: 10.20375/0000-000e-75a3-6
title: Raabe_Galeere.xmi
DOI: 10.20375/0000-000e-75a2-7
title: xmi

description: Annotierte Texte, die für jede direkte und indirekte Annotation von Redewiedergabe eine Emotionsannotation enthalten. Format: xmi
DOI: 10.20375/0000-000e-75a5-4
title: Raabe_Galeere.tei.xml
DOI: 10.20375/0000-000e-75a7-2
title: tei_rw_corpus_schema.rng
DOI: 10.20375/0000-000e-75a6-3
title: resources

description: der TEI XML-Umwandlung zugrunde liegendes Schema, unter Mitarbeit des DFG-Projekts "Redewiedergabe" (http://redewiedergabe.de/)
DOI: 10.20375/0000-000e-75a4-5
title: tei

description: Annotierte Texte, die für jede direkte und indirekte Annotation von Redewiedergabe eine Emotionsannotation enthalten. Format: TEI XML
DOI: 10.20375/0000-000e-75a1-8
title: 8a Annotierte Texte + Emotionen

description: Annotierte Texte, die für jede direkte und indirekte Annotation von Redewiedergabe eine Emotionsannotation enthalten
DOI: 10.20375/0000-000e-75aa-f
title: Raabe_Galeere_charV1.xmi
DOI: 10.20375/0000-000e-75a9-0
title: xmi

description: Annotierte Texte, die für jede direkte und indirekte Annotation von Redewiedergabe eine Annotation von indirekter Charakterisierung enthalten. Format: xmi
DOI: 10.25345/c5r56b
title: MassIVE MSV000088410 - Sceletium Molecular Networking - All Data
title: Metabolomic analysis of phytochemicals from Sceletium
DOI: 10.20375/0000-000e-75ac-d
title: Raabe_Galeere_charV1.tei.xml
DOI: 10.20375/0000-000e-75ae-b
title: tei_rw_corpus_schema.rng
DOI: 10.20375/0000-000e-75ad-c
title: resources

description: der TEI XML-Umwandlung zugrunde liegendes Schema, unter Mitarbeit des DFG-Projekts "Redewiedergabe" (http://redewiedergabe.de/)
DOI: 10.20375/0000-000e-75ab-e
title: tei

description: Annotierte Texte, die für jede direkte und indirekte Annotation von Redewiedergabe eine Annotation von indirekter Charakterisierung enthalten. Format: TEI XML
DOI: 10.20375/0000-000e-75a8-1
title: 8b Annotierte Texte + Propositionen

description: Annotierte Texte, die für jede direkte und indirekte Annotation von Redewiedergabe eine Annotation von indirekter Charakterisierung enthalten
DOI: 10.20375/0000-000e-75b0-7
title: tei_rw_corpus_schema.rng
DOI: 10.20375/0000-000e-75b1-6
title: tei_rw_corpus_doc.html
DOI: 10.20375/0000-000e-75b2-5
title: tei_rw_corpus.xml
DOI: 10.20375/0000-000e-75af-a
title: Schemata und Skripte

description: Schemata und Skripte, die der XML TEI-konformen Umwandlung der Texte in den Ordnern 7, 8a und 8b zugrunde liegen; unter Mitarbeit des DFG-Projekts "Redewiedergabe" (http://redewiedergabe.de/)
DOI: 10.20375/0000-000e-75b4-3
title: Dokumentation-zum-Korpus.pdf
DOI: 10.20375/0000-000e-75b5-2
title: Zeitstrahl_Korpustexte.pdf
DOI: 10.20375/0000-000e-75b6-1
title: Liste_Korpustexte.pdf
DOI: 10.20375/0000-000e-75b3-4
title: Dokumentation

description: ausführliche Dokumentation der Korpusveröffentlichung
DOI: 10.20375/0000-000e-75b7-0
title: ReadMe.txt

description: ReadMe zur Ordnerstruktur
DOI: 10.15468/cryr48
title: The genus Crumenaria (Rhamnaceae, Gouanieae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tortosa, Roberto D., Bartoli, Adriana, Cusato, Leonor (2013): The genus Crumenaria (Rhamnaceae, Gouanieae). Candollea 68 (2): 267-277, DOI: 10.15553/c2012v682a10
DOI: 10.6073/pasta/644b1247645a0d9f334e949a19d597df
title: Soil invertebrate surveys from the Shackleton Glacier region of Antarctica during the 2017-2018 austral summer

description: During the 2017-2018 austral summer, a survey of soil invertebrate diversity and abundance was conducted throughout the Shackleton Glacier region of Antarctica to investigate whether habitat suitability, taxonomic diversity, and community composition follow predictable temporal patterns after the Last Glacial Maximum (LGM). Soil samples were collected along elevation transects from twelve ice-free areas to capture maximum variation in soil properties, geochemistry, and surface exposure age. This data package includes invertebrate abundances (nematodes, tardigrades, rotifers) for each sample categorized by species, sex, and maturity (juvenile, adult).
DOI: 10.6084/m9.figshare.17041718
title: Source Data File: Determinants of synapse diversity revealed by super-resolution quantal transmission and active zone imaging

description: This is a Source Data File provided along with the manuscript: Determinants of synapse diversity revealed by super-resolution quantal transmission and active zone imaging
DOI: 10.6084/m9.figshare.17041718.v1
title: Source Data File: Determinants of synapse diversity revealed by super-resolution quantal transmission and active zone imaging

description: This is a Source Data File provided along with the manuscript: Determinants of synapse diversity revealed by super-resolution quantal transmission and active zone imaging
DOI: 10.5281/zenodo.5636209
title: GREEN-DB: Genomic Regulatory Elements ENcyclopedia

description: GREEN-DB is a comprehensive collection of 2.4 million regulatory elements in the human genome collected from previously published databases, high-throughput screenings and functional studies. Regulatory regions are classified as enhancers, promoters, silencers, bivalent and information on the controlled gene(s), tissue(s) and associated phenotype(s) are provided for each element when possible. We also calculated a variation constraint metric (range 0-1) for these regulatory regions and showed that genes controlled by constrained regions are enriched for disease-associated genes and essential genes from mouse knock-out screenings. The database also includes information from ENCODE TFBS and DNase peaks; ultra-conserved non-coding elements (UCNE), super-enhancers (dbSuper) and TAD domains (TAD-KB). This release includes 5 files: GREEN-DB_v2.5.db.gz: The full database in SQLite format GRCh37_GREEN-DB.bed.gz[.csi]: A indexed BED file using GRCh37 genome coordinates describing the regulatory regions and associated information useful for variant annotations (controlled genes, closest gene/TSS, constraint metric). GRCh38_GREEN-DB.bed.gz[.csi]: A indexed BED file using GRCh38 genome coordinates describing the regulatory regions and associated information useful for variant annotations (controlled genes, closest gene/TSS, constraint metric). To annotate a VCF file with information from GREEN-DB you can use the bed files and our tool GREEN-VARAN (https://github.com/edg1983/GREEN-VARAN). For more information on the GREEN-DB please refer to our publication (https://doi.org/10.1101/2020.09.17.301960) and to online documentation (https://green-varan.readthedocs.io/en/latest/) GREEN-DB is free to use for academic users, please refer to the attached LICENSE file. <strong>Changes from the previous version:</strong> - We fixed an issue with alias symbols conversion that caused a small fraction of region-gene links to point to the wrong gene - Due to the problem above, we removed any region-gene link where the region and the controlled gene were located on different chromosomes - GREEN-DB now includes also TAD domain information from TAD-KB (http://dna.cs.miami.edu/TADKB/) and region-gene interactions are now annotated for occurrence within the same TAD - Better constraint metric model that now takes into account overlap with exonic regions - In addition to the closest gene, an annotation for the closest TSS and its distance is now provided
DOI: 10.5281/zenodo.3981032
title: GREEN-DB: Genomic Regulatory Elements ENcyclopedia

description: GREEN-DB is a comprehensive collection of 2.4 million regulatory elements in the human genome collected from previously published databases, high-throughput screenings and functional studies. Regulatory regions are classified as enhancers, promoters, silencers, bivalent and information on the controlled gene(s), tissue(s) and associated phenotype(s) are provided for each element when possible. We also calculated a variation constraint metric (range 0-1) for these regulatory regions and showed that genes controlled by constrained regions are enriched for disease-associated genes and essential genes from mouse knock-out screenings. The database also includes information from ENCODE TFBS and DNase peaks; ultra-conserved non-coding elements (UCNE), super-enhancers (dbSuper) and TAD domains (TAD-KB). This release includes 5 files: GREEN-DB_v2.5.db.gz: The full database in SQLite format GRCh37_GREEN-DB.bed.gz[.csi]: A indexed BED file using GRCh37 genome coordinates describing the regulatory regions and associated information useful for variant annotations (controlled genes, closest gene/TSS, constraint metric). GRCh38_GREEN-DB.bed.gz[.csi]: A indexed BED file using GRCh38 genome coordinates describing the regulatory regions and associated information useful for variant annotations (controlled genes, closest gene/TSS, constraint metric). To annotate a VCF file with information from GREEN-DB you can use the bed files and our tool GREEN-VARAN (https://github.com/edg1983/GREEN-VARAN). For more information on the GREEN-DB please refer to our publication (https://doi.org/10.1101/2020.09.17.301960) and to online documentation (https://green-varan.readthedocs.io/en/latest/) GREEN-DB is free to use for academic users, please refer to the attached LICENSE file. <strong>Changes from the previous version:</strong> - We fixed an issue with alias symbols conversion that caused a small fraction of region-gene links to point to the wrong gene - Due to the problem above, we removed any region-gene link where the region and the controlled gene were located on different chromosomes - GREEN-DB now includes also TAD domain information from TAD-KB (http://dna.cs.miami.edu/TADKB/) and region-gene interactions are now annotated for occurrence within the same TAD - Better constraint metric model that now takes into account overlap with exonic regions - In addition to the closest gene, an annotation for the closest TSS and its distance is now provided
DOI: 10.5519/qd.o42jk2r7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1255 records)
DOI: 10.6073/pasta/be95b1768c93de51cf9d99dde84c6830
title: Year 2021, PIE LTER wind sensor data, 15 minute intervals, from the Ipswich Bay Yacht Club pier located in Ipswich, MA

description: Wind sensor measurements (wind speed and wind direction) for 2021 at the Ipswich Bay Yacht Club, Ipswich, MA, 15 minute average measurements.
DOI: 10.6084/m9.figshare.16866184.v1
title: Human platelets display dysregulated sepsis-associated autophagy, induced by altered LC3 protein-protein interaction of the Vici-protein EPG5

description: Platelets mediate central aspects of host responses during sepsis, an acute profoundly systemic inflammatory response due to infection. Macroautophagy/autophagy, which mediates critical aspects of cellular responses during inflammatory conditions, is known to be a functional cellular process in anucleate platelets, and is essential for normal platelet functions. Nevertheless, how sepsis may alter autophagy in platelets has never been established. Using platelets isolated from septic patients and matched healthy controls, we show that during clinical sepsis, the number of autophagosomes is increased in platelets, most likely due to an accumulation of autophagosomes, some containing mitochondria and indicative of mitophagy. Therefore, autophagy induction or early-stage autophagosome formation (as compared to decreased later-stage autophagosome maturation or autophagosome-late endosome/lysosome fusion) is normal or increased. This was consistent with decreased fusion of autophagosomes with lysosomes in platelets. EPG5 (ectopic P-granules autophagy protein 5 homolog), a protein essential for normal autophagy, expression did increase, while protein-protein interactions between EPG5 and MAP1LC3/LC3 (which orchestrate the fusion of autophagosomes and lysosomes) were significantly reduced in platelets during sepsis. Furthermore, data from a megakaryocyte model demonstrate the importance of TLR4 (toll like receptor 4), LPS-dependent signaling for regulating this mechanism. Similar phenotypes were also observed in platelets isolated from a patient with Vici syndrome: an inherited condition caused by a naturally occurring, loss-of-function mutation in EPG5. Together, we provide evidence that autophagic functions are aberrant in platelets during sepsis, due in part to reduced EPG5-LC3 interactions, regulated by TLR4 engagement, and the resultant accumulation of autophagosomes. <b>Abbreviations:</b> ACTB: beta actin; CLP: cecal ligation and puncture; Co-IP: co-immunoprecipitation; DAP: death associated protein; DMSO: dimethyl sulfoxide; EPG5: ectopic P-granules autophagy protein 5 homolog; ECL: enhanced chemiluminescence; HBSS: Hanks’ balanced salt solution; HRP: horseradish peroxidase; ICU: intensive care unit; LPS: lipopolysaccharide; LAMP1: lysosomal associated membrane protein 1; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MTOR: mechanistic target of rapamycin kinase; MKs: megakaryocytes; PFA: paraformaldehyde; PBS: phosphate-buffered saline; PLA: proximity ligation assay; pRT-PCR: quantitative real-time polymerase chain reaction; RT: room temperature; SQSTM1/p62: sequestosome 1; SDS-PAGE: sodium dodecyl sulfate-polyacrylamide gel electrophoresis; TLR4: toll like receptor 4; TEM: transmission electron microscopy; WGA: wheat germ agglutinin.
DOI: 10.6084/m9.figshare.16866184
title: Human platelets display dysregulated sepsis-associated autophagy, induced by altered LC3 protein-protein interaction of the Vici-protein EPG5

description: Platelets mediate central aspects of host responses during sepsis, an acute profoundly systemic inflammatory response due to infection. Macroautophagy/autophagy, which mediates critical aspects of cellular responses during inflammatory conditions, is known to be a functional cellular process in anucleate platelets, and is essential for normal platelet functions. Nevertheless, how sepsis may alter autophagy in platelets has never been established. Using platelets isolated from septic patients and matched healthy controls, we show that during clinical sepsis, the number of autophagosomes is increased in platelets, most likely due to an accumulation of autophagosomes, some containing mitochondria and indicative of mitophagy. Therefore, autophagy induction or early-stage autophagosome formation (as compared to decreased later-stage autophagosome maturation or autophagosome-late endosome/lysosome fusion) is normal or increased. This was consistent with decreased fusion of autophagosomes with lysosomes in platelets. EPG5 (ectopic P-granules autophagy protein 5 homolog), a protein essential for normal autophagy, expression did increase, while protein-protein interactions between EPG5 and MAP1LC3/LC3 (which orchestrate the fusion of autophagosomes and lysosomes) were significantly reduced in platelets during sepsis. Furthermore, data from a megakaryocyte model demonstrate the importance of TLR4 (toll like receptor 4), LPS-dependent signaling for regulating this mechanism. Similar phenotypes were also observed in platelets isolated from a patient with Vici syndrome: an inherited condition caused by a naturally occurring, loss-of-function mutation in EPG5. Together, we provide evidence that autophagic functions are aberrant in platelets during sepsis, due in part to reduced EPG5-LC3 interactions, regulated by TLR4 engagement, and the resultant accumulation of autophagosomes. <b>Abbreviations:</b> ACTB: beta actin; CLP: cecal ligation and puncture; Co-IP: co-immunoprecipitation; DAP: death associated protein; DMSO: dimethyl sulfoxide; EPG5: ectopic P-granules autophagy protein 5 homolog; ECL: enhanced chemiluminescence; HBSS: Hanks’ balanced salt solution; HRP: horseradish peroxidase; ICU: intensive care unit; LPS: lipopolysaccharide; LAMP1: lysosomal associated membrane protein 1; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MTOR: mechanistic target of rapamycin kinase; MKs: megakaryocytes; PFA: paraformaldehyde; PBS: phosphate-buffered saline; PLA: proximity ligation assay; pRT-PCR: quantitative real-time polymerase chain reaction; RT: room temperature; SQSTM1/p62: sequestosome 1; SDS-PAGE: sodium dodecyl sulfate-polyacrylamide gel electrophoresis; TLR4: toll like receptor 4; TEM: transmission electron microscopy; WGA: wheat germ agglutinin.
DOI: 10.5281/zenodo.5711345
title: Example code and data for ubms: An R package for fitting hierarchical occupancy and N-mixture abundance models in a Bayesian framework

description: This repository contains an R script (grouse_example.R) and data (grouse_data.csv) used to reproduce the grouse abundance analysis described in Kellner, K. F., et al. (2021) ubms: An R package for fitting hierarchical occupancy and N-mixture abundance models in a Bayesian framework. Methods in Ecology and Evolution. The R script requires installation of the ubms R package, which can be obtained from CRAN (https://cran.r-project.org/package=ubms). The repository also contains an additional example occupancy analysis (occupancy_example.R) using the crossbill dataset included with the unmarked R package.
DOI: 10.5281/zenodo.5576578
title: Example code and data for ubms: An R package for fitting hierarchical occupancy and N-mixture abundance models in a Bayesian framework

description: This repository contains an R script (grouse_example.R) and data (grouse_data.csv) used to reproduce the grouse abundance analysis described in Kellner, K. F., et al. (2021) ubms: An R package for fitting hierarchical occupancy and N-mixture abundance models in a Bayesian framework. Methods in Ecology and Evolution. The R script requires installation of the ubms R package, which can be obtained from CRAN (https://cran.r-project.org/package=ubms). The repository also contains an additional example occupancy analysis (occupancy_example.R) using the crossbill dataset included with the unmarked R package.
DOI: 10.6084/m9.figshare.17043086
title: Output files from ipyrad

description: All output files generated by running the raw GBS data through the ipyad pipeline.
DOI: 10.5281/zenodo.5711347
title: ECG Rhythm LEAD I

description: Database adapted from the original German database called PTB-XL, where only data related to normal sinus rhythm and atrial fibrillation were filtered.
DOI: 10.5281/zenodo.5711346
title: ECG Rhythm LEAD I

description: Database adapted from the original German database called PTB-XL, where only data related to normal sinus rhythm and atrial fibrillation were filtered.
DOI: 10.7303/syn26469748
title: Data resource for manuscript - Prophylactic Evaluation of Verubecestat on disease and symptom modifying effects in 5XFAD Mice
DOI: 10.5281/zenodo.5711351
title: Source data for "In-degree centrality in a social network is linked to coordinated neural activity"

description: The following includes the source data for the manuscript titled "In-degree centrality in a social network is linked to coordinated neural activity".
DOI: 10.6084/m9.figshare.17041763.v1
title: cornutum_ND1_aligned_renamed_full_CB-Aug2020.nexus

description: Multiple sequence alignment for all mtDNA sequences used to examine the phylogeography and demographic history of the Texas horned lizard.
DOI: 10.6084/m9.figshare.16992013.v2
title: Supplemental Data_Exercise Reduces the Protein Abundance of TXNIP and Its Interacting Partner REDD1 in Skeletal Muscle: Potential Role for a PKA-Mediated Mechanism

description: Supplemental Data for the Manuscript entitled, "Exercise Reduces the Protein Abundance of TXNIP and Its Interacting Partner REDD1 in Skeletal Muscle: Potential Role for a PKA-Mediated Mechanism".
DOI: 10.5281/zenodo.5703669
title: Paulinella micropora KR01 assembled transcripts

description: Description of files: <strong>5RACE_Combined_D_L_assembly.fa</strong> Transcripts assembled from 5-prime enriched RNA sequencing reads (cap-switching transcripts). Read data available from NCBI’s SRA repository (BioProject ID PRJNA730897). <strong>Standard_RNAseq_transcripts.fa</strong> Transcripts assembled from standard RNA sequencing reads (standard transcripts) that align to the <em>P. micropora </em>KR01 genome. Read data available from NCBI’s SRA repository (BioProject ID PRJNA568118). <strong>5RACE_Combined_D_L_assembly_mapped.seqnames.txt</strong> Names of the cap-switching transcripts that align to the <em>P. micropora </em>KR01 genome. <strong>5RACE_Combined_D_L_assembly_unmapped.seqnames.txt</strong> Names of the cap-switching transcripts that no not align to the <em>P. micropora </em>KR01 genome. <strong>5RACE_SL_Transcripts.seqnames.txt</strong> Names of the cap-switching transcripts that align to the <em>P. micropora </em>KR01 genome and encode a <em>Paulinella</em> spliced-leader sequence. <strong>5RACE_SL_Transcripts_unique2RACE.seqnames.txt</strong> Names of the cap-switching transcripts that align to the <em>P. micropora </em>KR01 genome, encode a <em>Paulinella</em> spliced-leader sequence, and are unique to the cap-switching dataset (i.e., are not encoded in the standard transcripts). <strong>Standard_RNAseq_SL_transcripts.seqnames.txt</strong> Names of the standard transcripts that align to the <em>P. micropora </em>KR01 genome and encode a <em>Paulinella</em> spliced-leader sequence.