cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bjhp74
title: Occurrence Download

description: A dataset containing 1654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia acuminata Benth."
 ]
}

 The dataset includes 1654 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011412-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ta6g4s
title: Occurrence Download

description: A dataset containing 3038495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3038495 records from 1158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011331-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxgyxz
title: Occurrence Download

description: A dataset containing 769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xylocopa aeratus)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 769 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064685-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/vbjjfe
title: A new replacement name for Hieracium atriglandulosum P. D. Sell (Cichorieae, Asteraceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Idrees, Muhammad, Zhang, Zhiyong (2022): A new replacement name for Hieracium atriglandulosum P. D. Sell (Cichorieae, Asteraceae). Phytotaxa 531 (1): 88-90, DOI: 10.11646/phytotaxa.531.1.10
DOI: 10.15468/7sanzs
title: Halamphora minima (Catenulaceae, Bacillariophyta), new brackish diatom species from the mudflat in Hampyeong Bay, Korea

description: This dataset contains the digitized treatments in Plazi based on the original journal article An, Sung Min, Kim, Jihoon, Kang, Nam Seon, Cho, Kichul, Kim, Eun Song (2022): Halamphora minima (Catenulaceae, Bacillariophyta), new brackish diatom species from the mudflat in Hampyeong Bay, Korea. Phytotaxa 572 (1): 115-122, DOI: 10.11646/phytotaxa.572.1.9, URL: http://dx.doi.org/10.11646/phytotaxa.572.1.9AbstractThe diversity of benthic diatoms living in the tidal flats is thought to be very high but has been somewhat marginalized from our main concern. We propose a new species, Halamphora minima sp. nov. isolated as monoclonal cultures from a tidal mudflat based on light and scanning electron microscopy and molecular analysis. This species is the smallest known species of the genus Halamphora to date. Other main characteristics that distinguish this species are the biseriate separated by strongly developed costa for the majority of the valve face, and density of dorsal striae. Phylogenetic analysis of the chloroplast ribulose bisphosphate carboxylase large chain gene showed that H. minima seems to be related to H. foramina, H. sydowii and H. tumida, but the phylogenetic location of H. minima was not clear due to the low bootstrap.
DOI: 10.15468/dl.xgpttt
title: Occurrence Download

description: A dataset containing 2778 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Panthera tigris tigris",
 "Year 2020-2025"
 ]
}

 The dataset includes 2778 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064684-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/e7d6sm
title: DNA barcoding highlights taxonomic uncertainties and cryptic lineages of São Francisco River basin fishes

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nunes, Denis Bruno Santos Marques, Pontes, Alany Itala, Santos, Leandro Ferreira dos, Calado, Leonardo Luís, Barros-Neto, Luciano Freitas, Lustosa-Costa, Silvia Yasmin, Queiroz Lima, Sergio Maia, Jacobina, Uedson Pereira (2024): DNA barcoding highlights taxonomic uncertainties and cryptic lineages of São Francisco River basin fishes. Neotropical Ichthyology 22 (4): e 240059, DOI: 10.1590/1982-0224-2024-0059, URL: https://doi.org/10.1590/1982-0224-2024-0059The São Francisco River (SFR) is a watershed of extreme socioeconomic importance and rich biodiversity, notable for its unique ichthyofauna and high levels of endemism. However, human interference threatens several fish species, putting them at risk of extinction. Genetic knowledge about the ichthyofauna of the SFR is still lacking. To address this gap, we used DNA barcoding of 94 taxa from six orders, 32 families, and 73 genera, sourced from the BOLD Systems platform and samples in the middle and lower SFR regions. Analyses revealed distinct patterns of genetic divergence. The BOLD platform identified 111 bins, 75 as MATCH, 32 as SPLIT, two as MERGE and two MIXTURE. We detected taxonomic confusions in the genera Astyanax and Psalidodon. Fourteen taxa exhibited high cryptic diversity, corroborated by lineage delimitation methods (BINs, ASAP, and GMYC). A significant portion of this cryptic diversity (eight lineages) is concentrated in the upper SFR, a region with tectonic faults, geomorphological reactivations, and the transposition of another basin, which likely contributed to genetically divergent lineages. Our data fill shortfalls in Linnaean and Darwinian knowledge about the SFR ichthyofauna, considering its hydrogeological formation. We hope this information will serve as a foundation for future management and conservation plans for this important ichthyofauna.
DOI: 10.15468/dl.msybd6
title: Occurrence Download

description: A dataset containing 23233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Iris pseudacorus L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Sweden"
 ]
}

 The dataset includes 23233 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068336-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/kywx6m
title: Seasearch Marine Surveys in England

description: This dataset consists of habitat and species records made by volunteer scuba divers. The data from 1982-1987 comprises sub-littoral surveys carried out by members of the Marine Conservation Society. The data from 1988-2000 comprises data using the initial Seasearch methodology by members of the Marine Conservation Society and associated organisations, including Sussex Seasearch. The data from 2001 onwards has been collected using the revised Seasearch methodology which has two main levels of detail. The Observation Form level provides a single sample containing habitat and species data from each site. The Survey Form level provides multiple habitat and species lists. This data has been collected from dives organised by the Marine Conservation Society, County Wildlife Trusts, Sussex Seasearch, dive clubs and individuals. Data has been entered by MCS and partner organisations and is freely available.
DOI: 10.15468/dl.ux6zdj
title: Occurrence Download

description: A dataset listing the 449241 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-7.52905 35.30991,-18.26294 28.67922,-23.18279 18.42537,-16.89631 4.26126,-10.88316 0.71195,3.32974 1.25852,8.79623 -34.44832,20.54921 -40.51524,50.06831 -29.82155,56.62811 -14.17408,54.44151 13.96455,44.05776 11.76484,42.69114 13.49838,41.52951 15.54884,39.59791 18.60798,34.8043 26.65483,35.00478 29.74622,33.80189 31.98315,31.59659 32.40729,29.9808 33.43369,24.67637 33.85426,14.57271 35.92592,9.52088 38.14362,3.58498 37.34469,1.18536 37.24421,-7.52905 35.30991))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 449241 records were derived from 4292 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006295-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vncf2a
title: Occurrence Download

description: A dataset containing 3991 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anoura geoffroyi Gray, 1838"
 ]
}

 The dataset includes 3991 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001324-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.th3w77
title: Occurrence Download

description: A dataset containing 467 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Romerolagus diazi (Ferrari-Pérez, 1893)"
 ]
}

 The dataset includes 467 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001325-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ffvdf
title: Occurrence Download

description: A dataset containing 1086 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Akodon aerosus Thomas, 1913"
 ]
}

 The dataset includes 1086 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001327-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brehyc
title: Occurrence Download

description: A dataset containing 512936 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Species recordings from the Danish National Portal Arter.dk",
 "Year 1000-2024"
 ]
}

 The dataset includes 512936 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001291-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5d5bq2
title: Occurrence Download

description: A dataset containing 107111 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fauna silvestre reubicada en el marco del Proyecto Hidroeléctrico Ituango"
 ]
}

 The dataset includes 107111 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001293-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjhctg
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-99.05131863043215 19.0859699344688,-98.83890716092094 19.0859699344688,-98.83890716092094 19.29838140398001,-99.05131863043215 19.29838140398001,-99.05131863043215 19.0859699344688))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Romerolagus diazi (Ferrari-Pérez, 1893)"
 ]
}

 The dataset includes 33 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001329-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tw9nvz
title: Occurrence Download

description: A dataset containing 614 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polylepis sericea Wedd."
 ]
}

 The dataset includes 614 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001330-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yu6ppy
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylaeamys tatei (Musser, Carleton, Brothers & Gardner, 1998)"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001332-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ckgys
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-106.87088 -33.14214,-36.12912 -33.14214,-36.12912 -4.85786,-106.87088 -4.85786,-106.87088 -33.14214))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hippocamelus antisensis (d'Orbigny, 1834)"
 ]
}

 The dataset includes 123 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001333-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13897638
title: Single-neuron Reconstruction of the Macaque Primary Motor Cortex

description: Here are 26 reconstructed neuron SWC files of the primary motor cortex from a one-year-old cynomolgus monkey.




























 











































In this study, we achieved visualization of neurons through sparse labeling and volumetric imaging with synchronized on-the-fly-scan and readout (VISoR) technique. Following whole-brain 3D reconstruction (GitHub - SMART-pipeline/Volume-reconstruction), we employed Lychnis for single-neuron reconstruction (GitHub - SMART-pipeline/Lychnis-tracing). Within Lychnis, the visualization toolkit (VTK) and virtual finger are utilized for 3D rendering and interactive labeling purposes.











































 

























The complete image datasets (raw and processed) of macaque brains exceed 1 petabyte, rendering it impractical to upload the entirety to a public data repository. This part of datasets generated and/or analyzed during the current study is available from the corresponding authors upon reasonable request.
DOI: 10.5281/zenodo.13899297
title: Spatially resolved single-cell atlas unveils A distinct cellular signature of fatal lung COVID-19 in a Malawian population

description: Postmortem single-cell studies have transformed understanding of lower respiratory tract diseases (LRTD) including Covid19, but there is minimal data from African settings where HIV, malaria and other environmental exposures may affect disease pathobiology and treatment targets. We used histology and high-dimensional imaging to characterise fatal lung disease in Malawian adults with (n=9) and without (n=7) Covid19, and generated single-cell transcriptomics data from lung, blood and nasal cells. Data integration with other  cohorts showed a conserved Covid19 histopathological signature, driven by contrasting immune and inflammatory mechanisms:  in USA, European and Asian cohorts by type I/III interferon responses, particularly in blood-derived monocytes, in the Malawi cohort, by response to interferon-gamma (IFN-γ) in lung-resident macrophages. HIV status had minimal impact on histology or immunopathology. Our study provides a data resource and highlights the importance of studying the cellular mechanisms of disease in underrepresented populations, indicating shared and distinct targets for treatment. 

Here, there are scripts containing pre-processing, image denoise, cell segmentation, single-cell and spatial statistics analysis as well as visualisation plots for the Imaging Mass Cytometry of the post-mortem lung sections. 

Check out the interactive single cell atlas hosted on the cellxgeneVIP platform hosted by the University of Glasgow, by clicking on https://cellatlas-cxg.mvls.gla.ac.uk/COSMIC/view/COSMIC_IMC_Lung.h5ad/
DOI: 10.15468/dl.bfd7zw
title: Occurrence Download

description: A dataset containing 821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-93.17815 15.67699,-85.48946 15.67699,-85.48946 23.39871,-93.17815 23.39871,-93.17815 15.67699))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tursiops truncatus (Montagu, 1821)"
 ]
}

 The dataset includes 821 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001334-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.awktxf
title: Occurrence Download

description: A dataset containing 318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-93.53349 17.0102,-85.12694 17.0102,-85.12694 24.2404,-93.53349 24.2404,-93.53349 17.0102))",
 "HasGeospatialIssue is false",
 "TaxonKey is Trichechus manatus Linnaeus, 1758"
 ]
}

 The dataset includes 318 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001335-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5gb1xv3h
title: MassIVE MSV000096322 - Baculoviral IAP repeat-containing protein 6 Ubiquitinates KRAS4A
title: Transcripts of the KRAS locus are alternatively spliced to generate two proteins, KRAS4A and KRAS4B, that differ in their membrane targeting sequences. These splice variants have been conserved for more than 450 million years, suggesting non-overlapping functions driven by differential membrane association. Here we use proximity labeling to map the differential interactomes of the KRAS splice variants. We found 24 and 10 proteins that interact specifically with KRAS4A or KRAS4B, respectively. The KRAS interacting protein most specific to KRAS4A was BIRC6, a large member of the inhibitor of apoptosis protein family unique in possessing E2/E3 ubiquitin ligase activity. We found that this interaction takes place on the Golgi apparatus and results in the mono- and di-ubiquitination of KRAS4A at lysines 128 and 147. Silencing BIRC6 diminished GTP-loading of and growth stimulation by KRAS4A but not KRAS4B. Thus, BIRC6 is a ubiquitin ligase that inhibits apoptosis and also modifies KRAS4A. The mass spectrometry files for figures 1D, 1E, S1B, S1C, Supplemental figure 4A are included here.
DOI: 10.15468/dl.2qcanx
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-81.92856717790879 -5.187502125331324,-77.92856717790879 -5.187502125331324,-77.92856717790879 -1.1875021253313243,-81.92856717790879 -1.1875021253313243,-81.92856717790879 -5.187502125331324))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arundo donax L."
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001336-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgx7kf
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-81.92856717790879 -5.187502125331324,-77.92856717790879 -5.187502125331324,-77.92856717790879 -1.1875021253313243,-81.92856717790879 -1.1875021253313243,-81.92856717790879 -5.187502125331324))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arundo donax L."
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001337-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9828528
title: BBC News
DOI: 10.15468/dl.tteqkt
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nephelomys auriventer (Thomas, 1899)"
 ]
}

 The dataset includes 44 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001338-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6as67
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.28_1",
 "TaxonKey is Pseudacris maculata (Agassiz, 1850)"
 ]
}

 The dataset includes 166 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001339-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mp4tb4
title: Occurrence Download

description: A dataset listing the 1294 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "PublishingOrg is one of (b459e790-0d3c-11d9-8431-b8a03c50a862, 0e2ae538-4332-4f41-bfee-8aa2c693d2a9, 939ed180-aa7b-11db-8edf-b8a03c50a862, a064f300-1bc8-41ea-9364-b864ef4e8938, 0d923068-1cec-44de-8b78-33a51fb0cacd, 8a471700-4ce8-11db-b80e-b8a03c50a862, bc092ff0-02e4-11dc-991f-b8a03c50a862, b3bf3a83-1f68-4541-a03f-330d30d567f5, ff90b050-c256-11db-b71b-b8a03c50a862)",
 "TaxonKey is Geometridae"
 ]
}

 The dataset's 1294 records were derived from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001308-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vxfxc
title: Occurrence Download

description: A dataset containing 11194 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Terrapene ornata (Agassiz, 1857)"
 ]
}

 The dataset includes 11194 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001340-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yr5v8e
title: Occurrence Download

description: A dataset containing 363795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((116.0426 39.65678, 116.7709 39.65678, 116.7709 40.2471, 116.0426 40.2471, 116.0426 39.65678))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 363795 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001302-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ms23av
title: Occurrence Download

description: A dataset containing 151289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ulva Linnaeus, 1753"
 ]
}

 The dataset includes 151289 records from 596 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001301-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.