cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rx2djv
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melaleuca quinquenervia",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013458-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16162724
title: GHGMon Data

description: Header in csv.
DOI: 10.5281/zenodo.16162725
title: GHGMon Data

description: Header in csv.
DOI: 10.15468/dl.597pma
title: Occurrence Download

description: A dataset containing 2197 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is Asia",
 "Country is Philippines",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rousettus amplexicaudatus",
 "Year 1000-2025"
 ]
}

 The dataset includes 2197 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013459-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8tfkdq
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isatis cappadocica"
 ]
}

 The dataset includes 269 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013457-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6n4wde
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa",
 "Country is Venezuela (Bolivarian Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 41 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013460-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22vpkg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADM8289"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013461-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.229kzf
title: Occurrence Download

description: A dataset containing 943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygonaceae",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 943 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013463-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.827sqe
title: Occurrence Download

description: A dataset containing 1240425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tachybaptus ruficollis, Circus aeruginosus, Phalacrocorax carbo, Emberiza schoeniclus, Gallinula chloropus, Riparia riparia, Acrocephalus schoenobaenus, Anas crecca, Alcedo atthis, Anas platyrhynchos, Locustella luscinioides, Rallus aquaticus, Aythya ferina, Ixobrychus minutus, Mareca strepera strepera, Cinclus cinclus, Charadrius dubius, Luscinia svecica)",
 "Year is one of (2020, 2021, 2022, 2023, 2024)",
 "DecimalLatitude is greater than or equal to 47.53364139636112",
 "DecimalLatitude is less than or equal to 54.8769089978912",
 "DecimalLongitude is greater than or equal to 6.033629",
 "DecimalLongitude is less than or equal to 15.037743",
 "Year is not null",
 "HasCoordinate is TRUE",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 1240425 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013435-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umcrdd
title: Occurrence Download

description: A dataset containing 12336 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylodesmum glutinosum"
 ]
}

 The dataset includes 12336 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013462-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpyc9p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vernonia aspera"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013465-250717081556266/datasets/export for details.
DOI: 10.15468/dl.9kdet6
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine pachyphylla"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013467-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2j8h5s
title: Occurrence Download

description: A dataset containing 26647 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Academy of Natural Sciences of Philadelphia Vertebrate Paleontology Collection"
 ]
}

 The dataset includes 26647 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013466-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnuzts
title: Occurrence Download

description: A dataset containing 17934122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tachybaptus ruficollis, Circus aeruginosus, Phalacrocorax carbo, Emberiza schoeniclus, Gallinula chloropus, Riparia riparia, Acrocephalus schoenobaenus, Anas crecca, Alcedo atthis, Anas platyrhynchos, Locustella luscinioides, Rallus aquaticus, Aythya ferina, Ixobrychus minutus, Mareca strepera strepera, Cinclus cinclus, Charadrius dubius, Luscinia svecica)",
 "Year is one of (2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024)",
 "DecimalLatitude is greater than or equal to 44.95782311925129",
 "DecimalLatitude is less than or equal to 58.30331634439415",
 "DecimalLongitude is greater than or equal to -10.001896207643075",
 "DecimalLongitude is less than or equal to 30.31691447027875",
 "Year is not null",
 "HasCoordinate is TRUE",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 17934122 records from 4082 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013434-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1405747.10fu
title: SH1405747.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1405749.10fu
title: SH1405749.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1405750.10fu
title: SH1405750.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1405751.10fu
title: SH1405751.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.17026/ar/9q2ulv
title: Schildwolde, Schildwolderdijk 65 (Gemeente Midden-Groningen, Gr.) Een Archeologisch Bureauonderzoek en Inventariserend Veldonderzoek (IVO-O) Verkennende Fase

description: &lt;p&gt;Uit het bureauonderzoek blijkt dat een hoge verwachting voor resten uit de steentijd en vanaf de middeleeuwen geldt voor het hele plangebied. Archeologische resten uit de steentijd kunnen bestaan uit vuurstenen artefacten, houtskoolconcentraties en grondsporen zoals haardkuilen. Vanaf het neolithicum komt ook aardewerk voor. Resten uit de middeleeuwen – nieuwe tijd kunnen bestaan uit resten van het kloosterterrein of losse vondsten. Indicatoren hiervan kunnen bestaan uit scherven aardewerk, glas, metaal, bouwkeramiek en bot. Grondsporen kunnen onder andere bestaan uit funderingen, greppels, kuilen en puinconcentraties. &lt;/p&gt;&lt;p&gt;
 Tijdens het veldwerk zijn zes boringen gezet in het plangebied. Uit de resultaten van het booronderzoek blijkt dat de ondergrond van het plangebied bestaat uit een bouwvoor met daaronder een verstoord pakket boven op de C-horizont. In de bodem zijn geen indicatoren voor het kloosterterrein aangetroffen en de podzolbodem is volledig verdwenen.&lt;/p&gt;
DOI: 10.15156/bio/sh1405753.10fu
title: SH1405753.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.36fave
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043208-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4rjzux
title: Occurrence Download

description: A dataset containing 339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Oceania",
 "TaxonKey is Amaranthus spinosus L."
 ]
}

 The dataset includes 339 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072093-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtbhdt
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Inula paludosa O.Hoffm."
 ]
}

 The dataset includes 37 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031809-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.27naqz
title: Occurrence Download

description: A dataset containing 103012603 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 103012603 records from 11452 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221331-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18762978
title: Curated Antibody Binding Affinity Datasets (AbCDR-Binding)

description: This dataset contains six curated antibody-antigen binding affinity datasets, as used in the paper "CDR-aware masked language models for paired antibodies enable state-of-the-art binding prediction."

Contents:

Six binding affinity datasets covering diverse antigen systems:



D44 dataset (N=2,048): Single-point mutants of anti-lysozyme antibody D44.1

G6 dataset (N=4,275): Single-point mutants of anti-lysozyme antibody HyHEL-10

Trastuzumab dataset (N=422): Single-point mutants of therapeutic anti-HER2 antibody

anti-Fluorescein dataset (N=11,052): Single and combinatorial mutants binding to fluorescein

anti-H1 Hemagglutinin dataset (N=1,038): Single and combinatorial mutants targeting influenza H1

anti-HR2 SARS-CoV-2 dataset (N=71,830): Combinatorial mutants targeting SARS-CoV-2 spike protein


 

Data sources:



D44, G6: Koenig et al. (2017), Warszawski et al. (2019)

Trastuzumab: Shanehsazzadeh et al. (2023)

anti-Fluorescein: Adams et al. (2016)

anti-H1 Hemagglutinin: Petersen et al. (2024)

anti-HR2 SARS-CoV-2: Lim et al. (2023)


 

If you use this dataset, please cite both the original data sources and our publication.
DOI: 10.5281/zenodo.18762977
title: Curated Antibody Binding Affinity Datasets (AbCDR-Binding)

description: This dataset contains six curated antibody-antigen binding affinity datasets, as used in the paper "CDR-aware masked language models for paired antibodies enable state-of-the-art binding prediction."

Contents:

Six binding affinity datasets covering diverse antigen systems:



D44 dataset (N=2,048): Single-point mutants of anti-lysozyme antibody D44.1

G6 dataset (N=4,275): Single-point mutants of anti-lysozyme antibody HyHEL-10

Trastuzumab dataset (N=422): Single-point mutants of therapeutic anti-HER2 antibody

anti-Fluorescein dataset (N=11,052): Single and combinatorial mutants binding to fluorescein

anti-H1 Hemagglutinin dataset (N=1,038): Single and combinatorial mutants targeting influenza H1

anti-HR2 SARS-CoV-2 dataset (N=71,830): Combinatorial mutants targeting SARS-CoV-2 spike protein


 

Data sources:



D44, G6: Koenig et al. (2017), Warszawski et al. (2019)

Trastuzumab: Shanehsazzadeh et al. (2023)

anti-Fluorescein: Adams et al. (2016)

anti-H1 Hemagglutinin: Petersen et al. (2024)

anti-HR2 SARS-CoV-2: Lim et al. (2023)


 

If you use this dataset, please cite both the original data sources and our publication.
DOI: 10.15468/dl.hqb3h5
title: Occurrence Download

description: A dataset containing 64959 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chordata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2025",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation)",
 "CoordinateUncertaintyInMeters is less than or equal to 200",
 "Geometry POLYGON ((-121.0148 35.96637, -120.7949 35.95486, -120.7656 35.91986, -120.8698 35.76599, -120.8942 35.60315, -120.8455 35.44397, -120.7297 35.309, -120.7251 35.19001, -120.7116 35.17489, -120.6428 35.13673, -120.6253 34.99636, -120.4833 34.86877, -120.3697 34.7339, -120.1697 34.6066, -119.9791 34.56009, -119.6267 34.54529, -119.4288 34.53159, -119.3023 34.55481, -119.1212 34.50124, -118.9227 34.50384, -118.7383 34.5648, -118.5922 34.67614, -118.5037 34.82321, -118.4849 34.98662, -118.4927 35.05698, -118.4841 35.07947, -118.463 35.27164, -118.5109 35.47806, -118.4129 35.63793, -118.3937 35.80123, -118.4478 35.95925, -118.5685 36.09093, -118.7399 36.1786, -118.9389 36.21046, -119.1388 36.18221, -119.267 36.12703, -119.4309 36.15632, -119.536 36.29662, -119.6968 36.39697, -119.8579 36.44004, -119.9938 36.55412, -120.0662 36.58993, -120.1035 36.7477, -120.2107 36.88735, -120.3476 36.97559, -120.3305 37.14402, -120.3616 37.31508, -120.4607 37.45881, -120.6185 37.56457, -120.8138 37.61812, -121.0204 37.61225, -121.2104 37.54773, -121.2802 37.50404, -121.4034 37.37258, -121.5281 37.03732, -121.5097 36.84457, -121.5118 36.68062, -121.5219 36.6189, -121.5453 36.456, -121.4946 36.29718, -121.3808 36.12897, -121.225 36.02418, -121.0148 35.96637))"
 ]
}

 The dataset includes 64959 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008094-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4zge7
title: Occurrence Download

description: A dataset containing 18059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-85.59196 22.2229,-85.43026 21.51549,-82.72032 20.47913,-80.17329 20.17621,-77.1354 19.15202,-74.84761 17.6217,-71.71671 17.14129,-70.38353 17.25707,-66.86879 17.23392,-65.57313 17.47782,-65.20455 17.76458,-65.11429 18.29388,-65.31738 18.47234,-65.89289 18.89401,-67.65968 19.46548,-68.7972 19.83017,-71.19143 20.39662,-73.22444 20.41931,-74.16834 20.75916,-75.91093 21.66167,-78.04075 22.82651,-80.12218 23.62718,-83.1959 23.56064,-85.59196 22.2229))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chiroptera"
 ]
}

 The dataset includes 18059 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008139-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yw3f39
title: Occurrence Download

description: A dataset containing 15961 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "Geometry POLYGON((-100.551 36.917,-71.79 36.917,-71.79 49.612,-100.551 49.612,-100.551 36.917))",
 "Year is greater than or equal to 2024",
 "RecordedBy is one of (A. Filippi-D’Anca, A.M, a12777470733980, a_virginian, aahmesnefertari, Aaron Clark, aaron_graham, abbata08, abelkinser, abrew, acouplewithoutborders, Adam, Adam Holder, Adam Knapp, Adam Pitts, adam1420, adam_a_sheehan, adam_timpf, adamcvean, adamfine, addieholt, Adele Philippides, Aden Robinson, adeneka, adrenal787, adventure86, aegolius99, aequorea, aezanne, AG Sweany, aidenjar, airhart, aislinn curry, aknap, akparrell, akq8, Al, Alain Maire, Alain Mochon, Alan Prather, Alan Wells, Albert E. Fulton, Ph.D., Albert Peters, Ale E., Aleks, Alen Douda, Alex, alex :), Alex Day, Alex Miller)",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 15961 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008138-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14951006
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.skprsv
title: Occurrence Download

description: A dataset containing 388 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Platypalpus major"
 ]
}

 The dataset includes 388 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008142-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.