cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1378709.v3
title: Sulfide intrusion and detoxification in the seagrass Zostera marina - dataset

description: Raw data for : Sulfide intrusion and detoxification in the seagrass Zostera marina
DOI: 10.6084/m9.figshare.1378695.v1
title: Raw Data for Urban woodland & matrix

description: Raw bat activity data collected from surveying urban woodlands in Central Scotland in 2011.
DOI: 10.6084/m9.figshare.1378675
title: Data: Trophic niche in a raptor species: the relationship between diet diversity, habitat diversity and territory quality. PLoSONE 2015

description: Recent research reports that many populations of species showing a wide trophic niche (generalists) are made up of both generalist individuals and individuals with a narrow trophic niche (specialists), suggesting trophic specializations at an individual level. If true, foraging strategies should be associated with individual quality and fitness. Optimal foraging theory predict that individuals will select the most favourable habitats for feeding. In addition, the “landscape heterogeneity hypothesis” predicts a higher number of species in more diverse landscapes. Thus, it can be predicted that individuals with a wider trophic niche should have foraging territories with greater habitat diversity, suggesting that foraging strategies, territory quality and habitat diversity are inter-correlated. This was tested for a population of common kestrels Falco tinnunculus. Diet diversity, territory occupancy (as a measure of territory quality) and habitat diversity of territories were measured over an 8-year period. Our results show that: 1) territory quality was quadratically correlated with habitat diversity, with the best territories being the least and most diverse; 2) diet diversity was not correlated with territory quality; and 3) diet diversity was negatively correlated with landscape heterogeneity. Our study suggests that niche generalist foraging strategies are based on an active search for different prey species within or between habitats rather than on the selection of territories with high habitat diversity.
DOI: 10.6084/m9.figshare.1378697.v1
title: Deciphering the RNA landscape by RNAome sequencing

description: Current RNA expression profiling methods rely on enrichment steps for specific RNA classes, thereby not detecting all RNA species in an unperturbed manner. We report strand-specific RNAome sequencing that determines expression of small and large RNAs from rRNA-depleted total RNA in a single sequence run. Since current analysis pipelines cannot reliably analyze small and large RNAs simultaneously, we developed TRAP, Total Rna Analysis Pipeline, a robust interface that is also compatible with existing RNA sequencing protocols. RNAome sequencing quantitatively preserved all RNA classes, allowing cross-class comparisons that facilitates the identification of relationships between different RNA classes. We demonstrate the strength of RNAome sequencing in mouse embryonic stem cells treated with cisplatin. MicroRNA and mRNA expression in RNAome sequencing significantly correlated between replicates and was in concordance with both existing RNA sequencing methods and gene expression arrays generated from the same samples. Moreover, RNAome sequencing also detected additional RNA classes such as enhancer RNAs, anti-sense RNAs, novel RNA species and numerous differentially expressed RNAs undetectable by other methods. At the level of complete RNA classes, RNAome sequencing also identified a specific global repression of the microRNA and microRNA isoform classes after cisplatin treatment whereas all other classes such as mRNAs were unchanged. These characteristics of RNAome sequencing will significantly improve expression analysis as well as studies on RNA biology not covered by existing methods.
DOI: 10.6084/m9.figshare.1378697.v2
title: Deciphering the RNA landscape by RNAome sequencing

description: Current RNA expression profiling methods rely on enrichment steps for specific RNA classes, thereby not detecting all RNA species in an unperturbed manner. We report strand-specific RNAome sequencing that determines expression of small and large RNAs from rRNA-depleted total RNA in a single sequence run. Since current analysis pipelines cannot reliably analyze small and large RNAs simultaneously, we developed TRAP, Total Rna Analysis Pipeline, a robust interface that is also compatible with existing RNA sequencing protocols. RNAome sequencing quantitatively preserved all RNA classes, allowing cross-class comparisons that facilitates the identification of relationships between different RNA classes. We demonstrate the strength of RNAome sequencing in mouse embryonic stem cells treated with cisplatin. MicroRNA and mRNA expression in RNAome sequencing significantly correlated between replicates and was in concordance with both existing RNA sequencing methods and gene expression arrays generated from the same samples. Moreover, RNAome sequencing also detected additional RNA classes such as enhancer RNAs, anti-sense RNAs, novel RNA species and numerous differentially expressed RNAs undetectable by other methods. At the level of complete RNA classes, RNAome sequencing also identified a specific global repression of the microRNA and microRNA isoform classes after cisplatin treatment whereas all other classes such as mRNAs were unchanged. These characteristics of RNAome sequencing will significantly improve expression analysis as well as studies on RNA biology not covered by existing methods.
DOI: 10.6084/m9.figshare.1378674
title: Plymouth University APCs 2015 (Jan-June)

description: This spreadsheet contains details of article processing charges (APCs) paid by Plymouth University during the first two quarters of 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the Plymouth University Library.
DOI: 10.6084/m9.figshare.1378697.v4
title: Deciphering the RNA landscape by RNAome sequencing

description: Current RNA expression profiling methods rely on enrichment steps for specific RNA classes, thereby not detecting all RNA species in an unperturbed manner. We report strand-specific RNAome sequencing that determines expression of small and large RNAs from rRNA-depleted total RNA in a single sequence run. Since current analysis pipelines cannot reliably analyze small and large RNAs simultaneously, we developed TRAP, Total Rna Analysis Pipeline, a robust interface that is also compatible with existing RNA sequencing protocols. RNAome sequencing quantitatively preserved all RNA classes, allowing cross-class comparisons that facilitates the identification of relationships between different RNA classes. We demonstrate the strength of RNAome sequencing in mouse embryonic stem cells treated with cisplatin. MicroRNA and mRNA expression in RNAome sequencing significantly correlated between replicates and was in concordance with both existing RNA sequencing methods and gene expression arrays generated from the same samples. Moreover, RNAome sequencing also detected additional RNA classes such as enhancer RNAs, anti-sense RNAs, novel RNA species and numerous differentially expressed RNAs undetectable by other methods. At the level of complete RNA classes, RNAome sequencing also identified a specific global repression of the microRNA and microRNA isoform classes after cisplatin treatment whereas all other classes such as mRNAs were unchanged. These characteristics of RNAome sequencing will significantly improve expression analysis as well as studies on RNA biology not covered by existing methods.
DOI: 10.6084/m9.figshare.1378675.v1
title: Navarro-López & Fargallo 2015 PLoSONE

description: Trophic niche in a raptor species: the relationship between diet diversity, habitat diversity and territory quality. PLoSONE 2015
DOI: 10.6084/m9.figshare.1378697.v3
title: Deciphering the RNA landscape by RNAome sequencing

description: Current RNA expression profiling methods rely on enrichment steps for specific RNA classes, thereby not detecting all RNA species in an unperturbed manner. We report strand-specific RNAome sequencing that determines expression of small and large RNAs from rRNA-depleted total RNA in a single sequence run. Since current analysis pipelines cannot reliably analyze small and large RNAs simultaneously, we developed TRAP, Total Rna Analysis Pipeline, a robust interface that is also compatible with existing RNA sequencing protocols. RNAome sequencing quantitatively preserved all RNA classes, allowing cross-class comparisons that facilitates the identification of relationships between different RNA classes. We demonstrate the strength of RNAome sequencing in mouse embryonic stem cells treated with cisplatin. MicroRNA and mRNA expression in RNAome sequencing significantly correlated between replicates and was in concordance with both existing RNA sequencing methods and gene expression arrays generated from the same samples. Moreover, RNAome sequencing also detected additional RNA classes such as enhancer RNAs, anti-sense RNAs, novel RNA species and numerous differentially expressed RNAs undetectable by other methods. At the level of complete RNA classes, RNAome sequencing also identified a specific global repression of the microRNA and microRNA isoform classes after cisplatin treatment whereas all other classes such as mRNAs were unchanged. These characteristics of RNAome sequencing will significantly improve expression analysis as well as studies on RNA biology not covered by existing methods.
DOI: 10.6084/m9.figshare.1378674.v1
title: Plymouth University APCs 2015 (Q1)

description: This spreadsheet contains details of article processing charges (APCs) paid by Plymouth University during the first quarter of 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the Plymouth University Library.
DOI: 10.6084/m9.figshare.1378610
title: Austrian Science Fund (FWF) Publication Cost Data 2014

description: Following 2013 (http://dx.doi.org/10.6084/m9.figshare.988754), the Austrian Science Fund (FWF) makes its publication costs spent in 2014 (esp. for Open Access) publically available. The dataset includes payments for publications of authors funded by the Austrian Science Fund (FWF) via following programmes: "Peer-Reviewed Publications": https://www.fwf.ac.at/en/research-funding/fwf-programmes/peer-reviewed-publications/ "Stand-Alone Publications": https://www.fwf.ac.at/en/research-funding/fwf-programmes/stand-alone-publications/ In addition to 2013, this dataset includes also costs for Open Access books and other venues.
DOI: 10.6084/m9.figshare.1378650
title: cardiac data 13

description: cardiac data
DOI: 10.6084/m9.figshare.1378674.v3
title: Plymouth University APCs 2015 (Jan-June)

description: This spreadsheet contains details of article processing charges (APCs) paid by Plymouth University during the first two quarters of 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the Plymouth University Library.
DOI: 10.6084/m9.figshare.1378675.v3
title: Data: Trophic niche in a raptor species: the relationship between diet diversity, habitat diversity and territory quality. PLoSONE 2015

description: Recent research reports that many populations of species showing a wide trophic niche (generalists) are made up of both generalist individuals and individuals with a narrow trophic niche (specialists), suggesting trophic specializations at an individual level. If true, foraging strategies should be associated with individual quality and fitness. Optimal foraging theory predict that individuals will select the most favourable habitats for feeding. In addition, the “landscape heterogeneity hypothesis” predicts a higher number of species in more diverse landscapes. Thus, it can be predicted that individuals with a wider trophic niche should have foraging territories with greater habitat diversity, suggesting that foraging strategies, territory quality and habitat diversity are inter-correlated. This was tested for a population of common kestrels Falco tinnunculus. Diet diversity, territory occupancy (as a measure of territory quality) and habitat diversity of territories were measured over an 8-year period. Our results show that: 1) territory quality was quadratically correlated with habitat diversity, with the best territories being the least and most diverse; 2) diet diversity was not correlated with territory quality; and 3) diet diversity was negatively correlated with landscape heterogeneity. Our study suggests that niche generalist foraging strategies are based on an active search for different prey species within or between habitats rather than on the selection of territories with high habitat diversity.
DOI: 10.6084/m9.figshare.1378675.v2
title: Navarro-López & Fargallo 2015 PLoSONE

description: Trophic niche in a raptor species: the relationship between diet diversity, habitat diversity and territory quality. PLoSONE 2015
DOI: 10.6084/m9.figshare.1378650.v1
title: cardiac data 13

description: cardiac data
DOI: 10.6084/m9.figshare.1378674.v2
title: Plymouth University APCs 2015 (Q1)

description: This spreadsheet contains details of article processing charges (APCs) paid by Plymouth University during the first two quarters of 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the Plymouth University Library.
DOI: 10.6084/m9.figshare.1378588
title: Gaussian Job Archive for C6H6Br2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1378609
title: cardiac data 15

description: cardiac data
DOI: 10.6084/m9.figshare.1378463
title: RAW Data of An Effective 3D Ear Acquisition System

description: The human ear is a new feature in biometrics that has several merits over the more common face, fingerprint and iris biometrics. It can be easily captured from a distance without a fully cooperative subject. Also, the ear has a relatively stable structure that does not change much with the age and facial expressions. We present a novel method of 3D ear acquisition system by using triangulation imaging principle, and the experiment results show that this design is efficient and can be used for ear recognition.
DOI: 10.6084/m9.figshare.1378362
title: cardiac data 14

description: cardiac data
DOI: 10.6084/m9.figshare.1378588.v1
title: Gaussian Job Archive for C6H6Br2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1378609.v1
title: cardiac data 15

description: cardiac data
DOI: 10.6084/m9.figshare.1378610.v9
title: Austrian Science Fund (FWF) Publication Cost Data 2014

description: Following 2013 (http://dx.doi.org/10.6084/m9.figshare.988754), the Austrian Science Fund (FWF) makes its publication costs spent in 2014 (esp. for Open Access) publically available. The dataset includes payments for publications of authors funded by the Austrian Science Fund (FWF) via following programmes: "Peer-Reviewed Publications": https://www.fwf.ac.at/en/research-funding/fwf-programmes/peer-reviewed-publications/ "Stand-Alone Publications": https://www.fwf.ac.at/en/research-funding/fwf-programmes/stand-alone-publications/ In addition to 2013, this dataset includes also costs for Open Access books and other venues.
DOI: 10.6084/m9.figshare.1378131
title: Draft genome sequence of Gluconobacter oxydans NL71

description: The total size of the complete genome of G. oxydans NL71 is 3,403,780 bp with a G+C content of 55.71%, which is similar to other gluconobacter. The total length of the predicted protein-coding sequences (CDSs) is 3,075,387 bp, making up 90.35% of the genome. Chromosome sequence annotation revealed 3226 predicted protein-encoding open reading frame (ORFs) , of which 50% were connected to the COGs and 93%, 36%, 35%, 92% were connected to the NR, Swiss-Port, GO, TrEMBL respectively. Approximately 54% of the CDSs were assigned a KEGG orthologous number and were involved in 154 predicted metabolic pathway. There are a total of 5 copies of rRNA operons and 59 genes encoding tRNAs found on the chromosome. In the genome of G. oxydans NL71, we also found 10 GIs with 189,204 bp, 3 Prophage with 52,054 bp, and none CRISPR. The genome sequence of G. oxydans 621H (2.7 Mbp) (GenBank accession no. CP000004 to CP000009) were used as the reference.
DOI: 10.6084/m9.figshare.1378352
title: cardiac data 12

description: cardiac data
DOI: 10.6084/m9.figshare.1378353
title: cardiac data 8

description: cardiac data
DOI: 10.6084/m9.figshare.1378463.v1
title: An Effective 3D Ear Acquisition System

description: The human ear is a new feature in biometrics that has several merits over the more common face, fingerprint and iris biometrics. It can be easily captured from a distance without a fully cooperative subject. Also, the ear has a relatively stable structure that does not change much with the age and facial expressions. We present a novel method of 3D ear acquisition system by using triangulation imaging principle, and the experiment results show that this design is efficient and can be used for ear recognition.
DOI: 10.6084/m9.figshare.1378610.v10
title: Austrian Science Fund (FWF) Publication Cost Data 2014

description: Following 2013 (http://dx.doi.org/10.6084/m9.figshare.988754), the Austrian Science Fund (FWF) makes its publication costs spent in 2014 (esp. for Open Access) publically available. The dataset includes payments for publications of authors funded by the Austrian Science Fund (FWF) via following programmes: "Peer-Reviewed Publications": https://www.fwf.ac.at/en/research-funding/fwf-programmes/peer-reviewed-publications/ "Stand-Alone Publications": https://www.fwf.ac.at/en/research-funding/fwf-programmes/stand-alone-publications/ In addition to 2013, this dataset includes also costs for Open Access books and other venues.
DOI: 10.6084/m9.figshare.1378131.v1
title: Draft genome sequence of Gluconobacter oxydans NL71

description: The total size of the complete genome of G. oxydans NL71 is 3,403,780 bp with a G+C content of 55.71%, which is similar to other gluconobacter. The total length of the predicted protein-coding sequences (CDSs) is 3,075,387 bp, making up 90.35% of the genome. Chromosome sequence annotation revealed 3226 predicted protein-encoding open reading frame (ORFs) , of which 50% were connected to the COGs and 93%, 36%, 35%, 92% were connected to the NR, Swiss-Port, GO, TrEMBL respectively. Approximately 54% of the CDSs were assigned a KEGG orthologous number and were involved in 154 predicted metabolic pathway. There are a total of 5 copies of rRNA operons and 59 genes encoding tRNAs found on the chromosome. In the genome of G. oxydans NL71, we also found 10 GIs with 189,204 bp, 3 Prophage with 52,054 bp, and none CRISPR. The genome sequence of G. oxydans 621H (2.7 Mbp) (GenBank accession no. CP000004 to CP000009) were used as the reference.
DOI: 10.6084/m9.figshare.1378352.v1
title: cardiac data 12

description: cardiac data
DOI: 10.6084/m9.figshare.1377862
title: Support for the microgenderome: Associations in a human clinical population. Dataset

description: Data from 274 patients diagnosed with Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) during treatment at a Melbourne specialist clinic during 2011-2013. Microbial composition from stool analyses from the patient's large colon are presented for anaerobic (Bacteroides, Bifidobacterium, Clostridium, Eubacterium, and Lactobacillus) and aerobic genera (Escherichia Coli, Streptococcus, Enterococcus). Exponent values reflect microbial frequency (viable count) in colony-forming units per gram (CFU/g). The predigit values are also presented for completeness. The percentage of each genus shows the proportion calculated against respective anaerobic/aerobic genera identified during faecal microbial assesment. The relative abundance (RA) of each genus was calculated by the ratio of genera count divided by total detectable bacteria count expressed as a percentage. Each patient completed the Bioscreen Patient Questionnaire and the Impact Score (severity x frequency: range 0-16) are shown for the 88 individual items. Scores for the 13 ME/CFS factors are presented.
DOI: 10.6084/m9.figshare.1378353.v1
title: cardiac data 8

description: cardiac data
DOI: 10.6084/m9.figshare.1377606
title: Auto Spa Calabasas

description: Go Green Auto Spa is all about saving water. We offer car detailing, waxing, auto spa and valet services in Sherman Oaks, Westwood and Los Angeles area.
DOI: 10.6084/m9.figshare.1378610.v11
title: Austrian Science Fund (FWF) Publication Cost Data 2014

description: Following 2013 (http://dx.doi.org/10.6084/m9.figshare.988754), the Austrian Science Fund (FWF) makes its publication costs spent in 2014 (esp. for Open Access) publically available. The dataset includes payments for publications of authors funded by the Austrian Science Fund (FWF) via following programmes: "Peer-Reviewed Publications": https://www.fwf.ac.at/en/research-funding/fwf-programmes/peer-reviewed-publications/ "Stand-Alone Publications": https://www.fwf.ac.at/en/research-funding/fwf-programmes/stand-alone-publications/ In addition to 2013, this dataset includes also costs for Open Access books and other venues.
DOI: 10.6084/m9.figshare.1377606.v1
title: Auto Spa Calabasas

description: Go Green Auto Spa is all about saving water. We offer car detailing, waxing, auto spa and valet services in Sherman Oaks, Westwood and Los Angeles area.
DOI: 10.6084/m9.figshare.1378463.v2
title: RAW Data of An Effective 3D Ear Acquisition System

description: The human ear is a new feature in biometrics that has several merits over the more common face, fingerprint and iris biometrics. It can be easily captured from a distance without a fully cooperative subject. Also, the ear has a relatively stable structure that does not change much with the age and facial expressions. We present a novel method of 3D ear acquisition system by using triangulation imaging principle, and the experiment results show that this design is efficient and can be used for ear recognition.