cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/5dz3c5tfw9.2
title: Coastal tidal wetland change in the northeastern United States

description: Coastal tidal wetlands are highly altered ecosystems at substantial risk due to widespread and frequent land-use change, coupled with sea-level rise, leading to disrupted hydrologic and ecologic functions and ultimately, significant reduction in climate resiliency. Knowing where and when the changes have occurred, and the nature of those changes and their associated risks, is paramount to coastal communities and natural resource management. Large-scale mapping of the costal tidal wetland changes is extremely difficult due to their inherent dynamic nature. 
To bridge this gap, we developed an automated algorithm for DEtection and Characterization of cOastal tiDal wEtlands change (DECODE) using dense Landsat time series. We used DECODE to track the status of coastal tidal wetlands in the northeastern United States from 1986 to 2020. The overall accuracy of land cover classification and change detection is approximate 95.8% and 99.8%, respectively. The vegetated wetlands and open water were mapped with 94.6% and 99.0% user’s accuracy, and 98.1% and 93.5% producer’s accuracy, respectively. The cover change and condition change were mapped with 68.0% and 80.0% user’s accuracy, and 80.5% and 97.1% producer’s accuracy, respectively. We discovered that approximately 3283 km2 (12%) of coastal tidal wetlands in the northeastern United States occurred at least one time of change but condition changes were responsible for majority (84.3%). Vegetated coastal tidal wetland decreased consistently (approximately 2.6 km2 per year) in the past 35 years, largely due to its conversion to open water.
DOI: 10.17632/xvgx4m9p8t.1
title: Complementary data: Can detomidine replace medetomidine for pharmacological semen collection in domestic cats?

description: Complementary data
DOI: 10.17632/wgsjz42pg8.2
title: Supplementary data for genome-wide DNA methylation and gene expression analysis of human blood in patients with metabolic syndrome

description: These supplementary data, associated with Baek et al.[1], comprise the raw data, and the analyzed and filtered epigenetic biomarker data, for patients with MetS and controls. Raw data (GEO accession: GSE181647) included RNA sequence (fastq) and methylation array (idat) data for 20 participants. Patient characteristics are listed in Table S1. Table S2 lists the differentially methylated probes (DMPs), comparing patients with MetS and controls. Table S3 describes the functional enrichment of genes under hyper- and hypomethylation. Table S4 presents the differentially expressed genes (DEGs). Table S5 describes the functional enrichment of the DEGs, using the DisGeNET gene sets. Table S6 lists the genes with significant correlations between their expression and DNA methylation. Table S7 describes the integrated functional network genes and pathways. 
List of Tables
Table S1. Demographics and characteristics of study population
Table S2. List of differentially methylated probes (DMPs) in MetS compared to control
Table S3. List of functional enrichment analysis of genes with hyper/hypo methylated in MetS compared to control. 
Table S4. List of differentially expressed genes (DEGs) in MetS compared to control.
Table S5. List of functional enrichment analysis of DEGs using DisGeNET gene sets.
Table S6. List of significantly correlated genes between DNA methylation and gene expression. 
Table S7. List of integrated functional network genes and pathways.
DOI: 10.17632/yfnk4zt2hk.1
title: data for music frogs

description: data for music frogs
DOI: 10.17632/6rwskzsf4g.1
title: Meditation Based Brain Painting Promotes Foreign Language Memory through Establishing a Brain-Computer Interface

description: Vocabulary_Memory_Performance_Annoymous file shows the performance data on language memory.
DOI: 10.17632/t27jvj4vz2.2
title: CCLEfullyIntercepted_EXP_CNV_miRNA_DataSET

description: The CCLE data was obtained from https://depmap.org/portal/download/. This includes the CCLE expression data. We obtained the RNAseq TPM gene expression data for protein coding genes, also Log2 transformed with a pseudocount of 1 and the HGNC and Entrez ID identifiers (“DepMap, Broad (2021): DepMap 21Q3 Public. figshare. Dataset,” n.d.)⁠. The miRNA expression data was also obtained from Depmap (Cancer Cell Line Encyclopedia Consortium, 2015; J et al., 2012).  We also obtained the CCLE ABSOLUTE copy number analysis results of 2019 (G. M et al., 2019)⁠  and mapped the CNV data of the corresponding miRNAs to the raw segmented copy-number profiles in the .seg file format (hg19) of
CCLE DNA Copy Number using the GRCh38.87 version of the genome. A full interception of all datasets was performed to have a complete dataset for 904 cell lines and 18431 instances including 541 miRNAs. For a full description check our publication here: https://www.sciencedirect.com/science/article/pii/S258900422101378X

The data set is formated to be used by BioNetUCR, available here: bionet.prislab.org/download

DepMap, Broad (2021): DepMap 21Q3 Public. figshare. Dataset. (n.d.). Retrieved September 2, 2021, from https://figshare.com/articles/dataset/DepMap_21Q3_Public/15160110/2?file=29124102

Cancer Cell Line Encyclopedia Consortium,  and G. of D. S. in C. C. (2015). Pharmacogenomic agreement between two cancer cell line data sets. Nature, 528(7580), 84–87. https://doi.org/10.1038/NATURE15736

M, G., FW, H., J, J.-V., GV, K., CC, L., ER, M., … WR, S. (2019). Next-generation characterization of the Cancer Cell Line Encyclopedia. Nature, 569(7757), 503–508. https://doi.org/10.1038/S41586-019-1186-3
DOI: 10.6084/m9.figshare.15183495.v5
title: Kidney epigenome and transcriptome-based multi-stage prioritization defines core cell types, genes and targetable mechanisms for kidney disease

description: Summary statistic data of eGFRcrea GWAS, kidney eQTL and kidney mQTL data<br>Kidney mQTL mapping was performed based on genotype and DNA methylation data of kidney samples from 443 trans-ancestry individuals (79% are of European ancestry). The significance of the top associated variants per CpG was estimated by adaptive permutation in FastQTL using the covariates above and the setting “--permute 1000”. Beta distribution-adjusted empirical p-values from FastQTL were used to calculate q-values using Storey’s q method, and a false discovery rate (FDR) threshold of ≤0.01 was applied to identify CpGs with a significant mQTL. Totally, we identified 139,313 mCpGs and 13,771,378 significant SNP-mCpG pairs<br>eGFRcrea GWAS meta-analysis was performed in 1,508,659 trans-ancestry individuals (80% are of European ancestry) by integrating five GWAS studies. We identified 90,950 variants showing genome wide significant (p &lt; 5E-8) association with eGFRcrea.<br>Kidney eQTL meta-analysis was performed in 686 trans-ancestry individuals (72% are of European ancestry) by integrating four eQTL studies. To define eGenes, we used the Storey approach to calculate q values for all associations for each gene. With significant q value (&lt; 0.01), we identified 10,430 eGenes and 1,222,250 significant SNP-gene pairs.<br><br>
DOI: 10.17632/kn9n7w2nyn.1
title: Data on the proliferation, erythrophagocytosis, cytoskeleton remodeling, and cell morphology of Entamoeba histolytica trophozoites at different external pH

description: 1.Table figure 1. Effect of SITS on the viability of E. histolytica trophozoites. The viability of the parasites after 1 h of incubation with the SITS inhibitor at 600, 100 and 10 µM was testing with trypan blue. The total of viable cells and samples was taken as 100% and the total of viable trophozoites was plotted by condition.
2.Table figure 2A. Hemoglobin quantification to 397 nm in the erythrophagocytosis assay at 5 min at different pHs previous incubation with DMSO and 100 µM SITS of three independent experiments.
3.Table figure 2C. Data of densitometric analysis of hemoglobin. Values were normalized with the densitometric value of pH 6.0 and it was taken as 100% from in SDS-PAGE of three independent assays by coomassie blue staining.
4.Table figure 3. Phagocytosed erythrocytes. The number of erythrocytes (RBCs) per trophozoite was recorded in amoebas preincubated with DMSO and with SIST 100 µm after erythrophagocytosis in suspension for 5 min at different pHs and evaluated by immunofluorescence.
DOI: 10.17632/svk5696h8d.1
title: Scrapnet

description: The dataset supporting the ScrapNet paper: ScrapNet: An Efficient Approach to Trash Classification
DOI: 10.17632/kt4n95h7zv.1
title: Chart 1. Aspects identified for the elaboration of the Protocol on Preservation of Forensic Traces in Urgent and Emergency Services. Aracaju, SE, Brazil, 2020. Protocol validation for the preservation of forensic traces in health services

description: A chat is presented with the agreement and content validation index of the topics evaluated regarding the validation of the protocol for the preservation of forensic traces in health services proposed by the first author.
DOI: 10.17632/wbmy9227zh.3
title: Encuesta de caracterización socioeconómica y ambiental del Sitio San Juan de la ciudad de Manta 

description:  Encuesta aplicada en el sitio San Juan de Manta, provincia de Manabí, Ecuador para generar datos de sus habitantes en el ámbito demográfico, económico, social y ambiental, que sirve de base para conocer su realidad y para la planificación, organización, diseño y aplicación de políticas públicas que permitan fortalecer la consecución del desarrollo económico local de este importante sector de la ciudad.
DOI: 10.17632/3p743v3tfn.1
title: Local Climate Zone (LCZ) map of the São Paulo Metropolitan Region - 2017

description: Title
LCZ map of the São Paulo Metropolitan Region – 2017

Data Description
This map is part of a PhD research entitled “Vegetation, surface temperature and urban morphology. A portrait of the São Paulo Metropolitan Region”.
The data consists of a shapefile of the São Paulo Metropolitan Region LCZ map of 2017 at 100m spatial resolution and a QGIS layer setting (.qml) for official color settings.
The LCZ classification used Landsat scenes and the Local Climate Zone Classification tool available at SAGA GIS version 2.2.0. We used Landsat 8-OLI scenes path 219 row 76 and 77 from 26th July and 15th November 2017.
Projection: EPSG 31983 – Sirgas 2000/ UTM zone 23S.
For more information about the method please refer to: 
FERREIRA, L. S. (2019). Vegetação, temperatura de superfície e morfologia urbana: um retrato da região metropolitana de São Paulo. Available at: https://teses.usp.br/teses/disponiveis/16/16132/tde-02102019-173844/pt-br.php
Classes are represented by numbers as follows:
LCZ 1 (DN 1) - Compact highrise
LCZ 2 (DN 2) - Compact midrise
LCZ 3 (DN 3) - Compact lowrise		
LCZ 4 (DN 4) - Open highrise		
LCZ 5 (DN 5) - Open midrise		
LCZ 6 (DN 6) - Open lowrise		
LCZ 8 (DN 8) - Large lowrise		
LCZ 9 (DN 9) - Sparsely built		
LCZ A (DN 101) - Dense trees		
LCZ B (DN 102) - Scattered trees		
LCZ C (DN 103) - Bush, scrub		
LCZ D (DN 104) - Low plants		
LCZ E (DN 105) - Bare rock or paved	
LCZ F (DN 106) - Bare soil or sand
LCZ G (DN 107) – Water

LCZ 7 - Lightweight low-rise and LCZ 10 - Heavy Industry	were not used due to the lack of significand areas of these categories.

Recommended citation for this data: 
Ferreira, Luciana Schwandner; Duarte, Denise Helena Silva (2022), “Local Climate Zone (LCZ) map of the São Paulo Metropolitan Region - 2017”, Mendeley Data, V1, doi: 10.17632/3p743v3tfn.1

Acknowledgement
This research was supported by the São Paulo Research Foundation – FAPESP (Grants #2015/17360-341 5 and #2016/02825-5) and by the National Council for Scientific and Technological Development – 342 CNPq (Productivity Grant 309669/2015-4).
DOI: 10.17632/48vfvn7v3k.1
title: Local Climate Zone (LCZ) map of the São Paulo Metropolitan Region - 2010

description: Title
LCZ map of the São Paulo Metropolitan Region – 2010

Data Description
This map is part of a PhD research entitled “Vegetation, surface temperature and urban morphology. A portrait of the São Paulo Metropolitan Region”.
The data consists of a shapefile of the São Paulo Metropolitan Region LCZ map of 2010 at 100m spatial resolution and a QGIS layer setting (.qml) for official color settings.
The LCZ classification used Landsat scenes and the Local Climate Zone Classification tool available at SAGA GIS version 2.2.0. We used Landsat 5-TM scenes path 219 row 76 and 77 from 18th April and 5th May 2010.
Projection: EPSG 31983 – Sirgas 2000/ UTM zone 23S.

For more information about the method please refer to: 
FERREIRA, L. S. (2019). Vegetação, temperatura de superfície e morfologia urbana: um retrato da região metropolitana de São Paulo. Available at: https://teses.usp.br/teses/disponiveis/16/16132/tde-02102019-173844/pt-br.php

Classes are represented by numbers as follows:
LCZ 1 (DN 1) - Compact highrise
LCZ 2 (DN 2) - Compact midrise
LCZ 3 (DN 3) - Compact lowrise		
LCZ 4 (DN 4) - Open highrise		
LCZ 5 (DN 5) - Open midrise		
LCZ 6 (DN 6) - Open lowrise		
LCZ 8 (DN 8) - Large lowrise		
LCZ 9 (DN 9) - Sparsely built		
LCZ A (DN 101) - Dense trees		
LCZ B (DN 102) - Scattered trees		
LCZ C (DN 103) - Bush, scrub		
LCZ D (DN 104) - Low plants		
LCZ E (DN 105) - Bare rock or paved	
LCZ F (DN 106) - Bare soil or sand
LCZ G (DN 107) – Water

LCZ 7 - Lightweight low-rise and LCZ 10 - Heavy Industry	were not used due to the lack of significand areas of these categories.

Recommended citation for this data: 
Ferreira, Luciana Schwandner (2022), “Local Climate Zone (LCZ) map of the São Paulo Metropolitan Region - 2010”, Mendeley Data, V1, doi: 10.17632/48vfvn7v3k.11

Acknowledgement
This research was supported by the São Paulo Research Foundation – FAPESP (Grants #2015/17360-341 5 and #2016/02825-5) and by the National Council for Scientific and Technological Development – 342 CNPq (Productivity Grant 309669/2015-4).
DOI: 10.17632/pt5mzwdwfz.2
title: Supplementary Annex of Experiments Pertaining to Peritoneal Carcinomatosis

description: The data available here are used in the publication: "Ligand inhibition of circulating PAI-1 in an enclosed biological system exploits paracrine addiction for therapy in peritoneal carcinomatosis".
DOI: 10.17632/583hcrcntk.2
title: The Vestigial Trace of Old French -é in English words

description: This sheet contains a dataset of 62 common English words ending with the suffix -ee in alphabetical order. The suffix has been adopted from Old French -é. By and large, English does not allow for the stress to be assigned onto the suffix, but the suffix -ee uniquely receives the stress. Yates (2019) reminds the present author that main stress could change onto the inflectional suffix in Indo-European languages; English affiliates to the Germanic branch of Indo-European (Hogg 2011). The following data has been manually collected from Random House Webster Merriam College Dictionary (2005) and Collins Online Dictionary (2021) so that the nature of accentual mobility can be studied in the English words (cf. Kiparsky 1973).
DOI: 10.17632/9yy4dvctnd.1
title: Supplemental_S1_ J. Dairy Sci 10.3168/jds.2021-20952

description: Supplemental_File _ Article: Teixeira et al. 2022: USING SENSORS FOR EARLY DETECTION OF ANAPLASMOSIS. J. Dairy Sci 10.3168/jds.2021-20952
The architectures of LSTM algorithms for each time series length (5, 7, 10, and 12 d), and each day relative to anaplasmosis (0, −1, −3, and −5 d) of the remaining tested
architectures (total of 345).
DOI: 10.17632/vzw944wghx.1
title: Local Climate Zone (LCZ) map of the São Paulo Metropolitan Region – 2002

description: Title
Local Climate Zone (LCZ) map of the São Paulo Metropolitan Region – 2002

Data Description
This map is part of a PhD research entitled “Vegetation, surface temperature and urban morphology. A portrait of the São Paulo Metropolitan Region”.
The data consists of a shapefile of the São Paulo Metropolitan Region LCZ map of 2002 at 100m spatial resolution and a QGIS layer setting (.qml) for official color settings.
The LCZ classification used Landsat scenes and the Local Climate Zone Classification tool available at SAGA GIS version 2.2.0. We used Landsat7-ETM+ scenes path 219 row 76 and 77 from 20th April and 7th June 2002.
Projection: EPSG 31983 – Sirgas 2000/ UTM zone 23S.
For more information about the method please refer to: 
FERREIRA, L. S. (2019). Vegetação, temperatura de superfície e morfologia urbana: um retrato da região metropolitana de São Paulo. Available at: https://teses.usp.br/teses/disponiveis/16/16132/tde-02102019-173844/pt-br.php
Classes are represented by numbers as follows:
LCZ 1 (DN 1) - Compact highrise
LCZ 2 (DN 2) - Compact midrise
LCZ 3 (DN 3) - Compact lowrise		
LCZ 4 (DN 4) - Open highrise		
LCZ 5 (DN 5) - Open midrise		
LCZ 6 (DN 6) - Open lowrise		
LCZ 8 (DN 8) - Large lowrise		
LCZ 9 (DN 9) - Sparsely built		
LCZ A (DN 101) - Dense trees		
LCZ B (DN 102) - Scattered trees		
LCZ C (DN 103) - Bush, scrub		
LCZ D (DN 104) - Low plants		
LCZ E (DN 105) - Bare rock or paved	
LCZ F (DN 106) - Bare soil or sand
LCZ G (DN 107) – Water

LCZ 7 - Lightweight low-rise and LCZ 10 - Heavy Industry	were not used due to the lack of significand areas of these categories.

Recommended citation for this data: 
Ferreira, Luciana Schwandner (2022), “Local Climate Zone (LCZ) map of the São Paulo Metropolitan Region – 2002”, Mendeley Data, V1, doi: 10.17632/vzw944wghx.1

Acknowledgement
This research was supported by the São Paulo Research Foundation – FAPESP (Grants #2015/17360-341 5 and #2016/02825-5) and by the National Council for Scientific and Technological Development – 342 CNPq (Productivity Grant 309669/2015-4).
DOI: 10.25345/c5s46h714
title: MassIVE MSV000088912 - Bacillus subtilis 3610 TTC induction preliminary results v1
title: Metabolimic analysis of an inducible antimicrobial activity in Bacillu spp. against Ralstonia solanacearum by molecular networking
DOI: 10.6084/m9.figshare.17141849
title: Phylogenetic systematics of <i>Quetzalcoatlus</i> Lawson 1975 (Pterodactyloidea:Azhdarchoidea)

description: The Azhdarchidae have come to be known as the most diverse clade of Late Cretaceous pterosaurs and the largest flying creatures in existence. Since the erection of the taxon nearly four decades ago, many partial specimens have been referred to it from the Early Cretaceous and Late Jurassic, but none of these identifications can be confirmed. The most comprehensive phylogenetic analysis and taxonomy of Pterosauria is presented, and the evolutionary history of the Azhdarchidae is reviewed. As currently known, azhdarchids are restricted to the Late Cretaceous (Turonian–Maastrichtian). Fourteen species are currently included in the Azhdarchidae: <i>Quetzalcoatlus northropi</i> and <i>Q. lawsoni</i> are recovered as sister taxa in a monophyletic <i>Quetzalcoatlus</i>, with <i>Arambourgiania philadelphiae</i>, <i>Hatzegopteryx thambema</i>, a trichotomy with <i>Cryodrakon boreas</i> and <i>Wellnhopterus brevirostris</i>, <i>Zhejiangopterus linhaiensis</i>, <i>Eurazhdarcho langendorfensis</i>, a <i>Phosphatodraco mauritanicus</i> + <i>Aralazhdarcho bostobensis</i> sister group, as well as an <i>Azhdarcho lancicollis</i> + <i>Albadraco tharmisensis</i> + <i>Aerotitan sudamericanus</i> + <i>Mistralazhdarcho maggii</i> clade are recovered as successive outgroups to <i>Quetzalcoatlus</i> in the Azhdarchidae. The previous azhdarchid species <i>Montanazhdarcho minor</i> and <i>Radiodactylus langstoni</i> are recovered as non-azhdarchid azhdarchiforms; <i>Alanqa saharica</i> and <i>Argentinadraco barrealensis</i> are thalassodromines; <i>Cretornis hlavaci</i> and <i>Volgadraco bogolubovi</i> are pteranodontians; and <i>Bakonydraco galaczi</i> is a tapejarine. Up to a dozen pterosaur lineages persist into the latest Cretaceous (Maastrichtian Age) including azhdarchids, pteranodontids, and nyctosauromorphs. In the Late Cretaceous, an ornithocheirid, cimoliopterids, a lonchodrachonid, a lonchodectid, pteranodontians, tapejarines, thalassodromines, a chaoyangopterine, and azhdarchiforms are present. The pterosaurs did not have a terminal decline in diversity and were increasing in species number at the end of the Cretaceous Period.
DOI: 10.6084/m9.figshare.17141849.v2
title: Phylogenetic systematics of <i>Quetzalcoatlus</i> Lawson 1975 (Pterodactyloidea:Azhdarchoidea)

description: The Azhdarchidae have come to be known as the most diverse clade of Late Cretaceous pterosaurs and the largest flying creatures in existence. Since the erection of the taxon nearly four decades ago, many partial specimens have been referred to it from the Early Cretaceous and Late Jurassic, but none of these identifications can be confirmed. The most comprehensive phylogenetic analysis and taxonomy of Pterosauria is presented, and the evolutionary history of the Azhdarchidae is reviewed. As currently known, azhdarchids are restricted to the Late Cretaceous (Turonian–Maastrichtian). Fourteen species are currently included in the Azhdarchidae: <i>Quetzalcoatlus northropi</i> and <i>Q. lawsoni</i> are recovered as sister taxa in a monophyletic <i>Quetzalcoatlus</i>, with <i>Arambourgiania philadelphiae</i>, <i>Hatzegopteryx thambema</i>, a trichotomy with <i>Cryodrakon boreas</i> and <i>Wellnhopterus brevirostris</i>, <i>Zhejiangopterus linhaiensis</i>, <i>Eurazhdarcho langendorfensis</i>, a <i>Phosphatodraco mauritanicus</i> + <i>Aralazhdarcho bostobensis</i> sister group, as well as an <i>Azhdarcho lancicollis</i> + <i>Albadraco tharmisensis</i> + <i>Aerotitan sudamericanus</i> + <i>Mistralazhdarcho maggii</i> clade are recovered as successive outgroups to <i>Quetzalcoatlus</i> in the Azhdarchidae. The previous azhdarchid species <i>Montanazhdarcho minor</i> and <i>Radiodactylus langstoni</i> are recovered as non-azhdarchid azhdarchiforms; <i>Alanqa saharica</i> and <i>Argentinadraco barrealensis</i> are thalassodromines; <i>Cretornis hlavaci</i> and <i>Volgadraco bogolubovi</i> are pteranodontians; and <i>Bakonydraco galaczi</i> is a tapejarine. Up to a dozen pterosaur lineages persist into the latest Cretaceous (Maastrichtian Age) including azhdarchids, pteranodontids, and nyctosauromorphs. In the Late Cretaceous, an ornithocheirid, cimoliopterids, a lonchodrachonid, a lonchodectid, pteranodontians, tapejarines, thalassodromines, a chaoyangopterine, and azhdarchiforms are present. The pterosaurs did not have a terminal decline in diversity and were increasing in species number at the end of the Cretaceous Period.
DOI: 10.17632/rdxwhbt3hm.2
title: Opecoelidae 28S + 18S rRNA genes alignment

description: Trimmed and untrimmed 28S + 18S rRNA genes alignment for the Opecoelidae (Trematoda) used as evidence for the proposal of a new subfamily, the Pseudoplagioporinae, see:
Martin SB, Cutmore SC & Cribb TH (2019). The Pseudoplagioporinae, a new subfamily in the Opecoelidae Ozaki, 1925 (Trematoda) for a small clade parasitising mainly lethrinid fishes, with three new species. Journal of Systematic Zoology and Evolutionary Research