cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.r5dmc3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Omphalodes davisiana Kit Tan & Sorger"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062121-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94rn7b
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nepeta monocephala Rech.f."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062122-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/673669500a2330d787ed98019a4da4af
title: Litterfall in Hemlock Removal Experiment at Harvard Forest since 2005

description: Hemlock decline in New England is caused by direct and indirect effects of invasion of the hemlock woolly adelgid. Direct damage from the insect is causing gradual mortality of hemlock, and widespread harvesting of hemlock in advance of mortality, in contrast, causes immediate mortality and removal of biomass from the site. Although both processes affect thousands of acres of forest annually we have only a limited understanding of their effects on forest ecosystem function and productivity and the nature of the subsequent forest community. We anticipate that harvesting will yield different consequences than gradual mortality from the insect. Therefore we designed an experiment to simulate these contrasting impacts, by logging or girdling hemlock stands. Results from the experimental treatments will be compared to the changes observed in forests that are being infested by the adelgid, and can also be included in integrated analyses of a suite of large experiments that form a core component of the Harvard Forest LTER program.
DOI: 10.15468/dl.wbjzu5
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma caerulescens Boiss."
 ]
}

 The dataset includes 40 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062124-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2d3ndh
title: Occurrence Download

description: A dataset containing 421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Syrmaticus ellioti (Swinhoe, 1872)",
 "Year 1990-2024"
 ]
}

 The dataset includes 421 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062123-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgr6yr
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Narcissus alcaracensis S.Ríos, D.Rivera, Alcaraz & Obón"
 ]
}

 The dataset includes 35 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062126-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddbmu3
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ormosia glaberrima Y.C.Wu"
 ]
}

 The dataset includes 65 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062128-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.haz75k
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Omphalodes heterophylla Rech.fil. & Riedl"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062129-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/e962581f8bd1d8f2628abf5f0a54e7c8
title: Synthesis of Hemlock Removal Experiment at Harvard Forest 2003-2019

description: In 2023, we synthesized the data from 6 Harvard Forest Hemlock Removal Experiment datasets (HF054, HF106, HF107, HF125, HF126 and HF161) to discern differences between the girdling and logging treatments from 2004-2019.
 Forest insect outbreaks cause large changes in ecosystem structure, composition, and function. Humans often respond to insect outbreaks by conducting salvage logging, which can amplify the immediate effects, but it is unclear whether logging will result in lasting differences in forest structure and dynamics when compared with forests affected only by insect outbreak. We used 15 years of data from an experimental removal of Tsuga canadensis (L.) Carr. (Eastern hemlock), a foundation tree species within eastern North American forests, and contrasted the rate, magnitude, and persistence of response trajectories between girdling (emulating mortality from insect outbreak) and timber harvest treatments.
DOI: 10.15468/dl.ptpv7m
title: Occurrence Download

description: A dataset containing 4302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "TaxonKey is Garrulus glandarius (Linnaeus, 1758)"
 ]
}

 The dataset includes 4302 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062127-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m8nt4b
title: Occurrence Download

description: A dataset containing 1446 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nuxia floribunda Benth."
 ]
}

 The dataset includes 1446 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062130-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22624747.v1
title: Additional file 2 of Extensive prevalence and significant genetic differentiation of Blastocystis in high- and low-altitude populations of wild rhesus macaques in China

description: Additional file 2: Table. S2. Distribution, positive number and accession numbers of subtype haplotypes.
DOI: 10.6084/m9.figshare.22624744
title: Additional file 1 of Extensive prevalence and significant genetic differentiation of Blastocystis in high- and low-altitude populations of wild rhesus macaques in China

description: Additional file 1: Table. S1. Chi-square test for the prevalence between HAG and LAG.
DOI: 10.6084/m9.figshare.22624819.v1
title: Additional file 1 of Genome-wide identification and expression analysis of DREB family genes in cotton

description: Additional file 1: Table S1. WGD or segmental and tandem gene pairs.
DOI: 10.6084/m9.figshare.13711943.v1
title: CD36 and LC3B initiated autophagy in B cells regulates the humoral immune response

description: Scavenger receptors are pattern recognition receptors that recognize both foreign and self-ligands, and initiate different mechanisms of cellular activation, often as co-receptors. The function of scavenger receptor CD36 in the immune system has mostly been studied in macrophages but it is also highly expressed by innate type B cells where its function is less explored. Here we report that CD36 is involved in macro-autophagy/autophagy in B cells, and in its absence, the humoral immune response is impaired. We found that CD36-deficient B cells exhibit a significantly reduced plasma cell formation, proliferation, mitochondrial mobilization and oxidative phosphorylation. These changes were accompanied by impaired initiation of autophagy, and we found that CD36 regulated autophagy and colocalized with autophagosome membrane protein MAP1LC3/LC3 (microtubule-associated protein 1 light chain 3). When we investigated T-cell-dependent immune responses, we found that mice with CD36 deficiency, specifically in B cells, exhibited attenuated germinal center responses, class switching, and antibody production as well as autophagosome formation. These findings establish a critical role for CD36 in B cell responses and may also contribute to our understanding of CD36-mediated autophagy in other cells as well as in B cell lymphomas that have been shown to express the receptor. <b>Abbreviations:</b> AICDA/AID: activation-induced cytidine deaminase; ATG5: autophagy related 5; ATP: adenosine triphosphate; BCR: B-cell receptor; CPG: unmethylated cytosine-guanosine; CQ: chloroquine; DC: dendritic cells; FOB: follicular B cells; GC: germinal center; Ig: immunoglobulin; LPS: lipopolysaccharide; MAP1LC3/LC3: microtubule-associated protein 1 light chain 3; MFI: mean fluorescence intensity; MZB: marginal zone B cells; NP-CGG: 4-hydroxy-3-nitrophenylacetyl-chicken gamma globulin; OCR: oxygen consumption rate; oxLDL: oxidized low-density lipoprotein; PC: plasma cells; Rapa: rapamycin; SQSTM1/p62: sequestosome 1; SRBC: sheep red blood cells; Tfh: follicular helper T cells; TLR: toll-like receptor.
DOI: 10.6084/m9.figshare.13711943.v2
title: CD36 and LC3B initiated autophagy in B cells regulates the humoral immune response

description: Scavenger receptors are pattern recognition receptors that recognize both foreign and self-ligands, and initiate different mechanisms of cellular activation, often as co-receptors. The function of scavenger receptor CD36 in the immune system has mostly been studied in macrophages but it is also highly expressed by innate type B cells where its function is less explored. Here we report that CD36 is involved in macro-autophagy/autophagy in B cells, and in its absence, the humoral immune response is impaired. We found that CD36-deficient B cells exhibit a significantly reduced plasma cell formation, proliferation, mitochondrial mobilization and oxidative phosphorylation. These changes were accompanied by impaired initiation of autophagy, and we found that CD36 regulated autophagy and colocalized with autophagosome membrane protein MAP1LC3/LC3 (microtubule-associated protein 1 light chain 3). When we investigated T-cell-dependent immune responses, we found that mice with CD36 deficiency, specifically in B cells, exhibited attenuated germinal center responses, class switching, and antibody production as well as autophagosome formation. These findings establish a critical role for CD36 in B cell responses and may also contribute to our understanding of CD36-mediated autophagy in other cells as well as in B cell lymphomas that have been shown to express the receptor. <b>Abbreviations:</b> AICDA/AID: activation-induced cytidine deaminase; ATG5: autophagy related 5; ATP: adenosine triphosphate; BCR: B-cell receptor; CPG: unmethylated cytosine-guanosine; CQ: chloroquine; DC: dendritic cells; FOB: follicular B cells; GC: germinal center; Ig: immunoglobulin; LPS: lipopolysaccharide; MAP1LC3/LC3: microtubule-associated protein 1 light chain 3; MFI: mean fluorescence intensity; MZB: marginal zone B cells; NP-CGG: 4-hydroxy-3-nitrophenylacetyl-chicken gamma globulin; OCR: oxygen consumption rate; oxLDL: oxidized low-density lipoprotein; PC: plasma cells; Rapa: rapamycin; SQSTM1/p62: sequestosome 1; SRBC: sheep red blood cells; Tfh: follicular helper T cells; TLR: toll-like receptor.
DOI: 10.6084/m9.figshare.22624939.v1
title: Additional file 3 of circMMD reduction following tumor treating fields inhibits glioblastoma progression through FUBP1/FIR/DVL1 and miR-15b-5p/FZD6 signaling

description: Additional file 3: Table S2. Clinical information of glioma array.
DOI: 10.6084/m9.figshare.22624822.v1
title: Additional file 2 of Genome-wide identification and expression analysis of DREB family genes in cotton

description: Additional file 2: Table S2. List of syntenic gene pairs.
DOI: 10.6084/m9.figshare.22624942.v1
title: Additional file 4 of circMMD reduction following tumor treating fields inhibits glioblastoma progression through FUBP1/FIR/DVL1 and miR-15b-5p/FZD6 signaling

description: Additional file 4: Table S3. Correlation between circMMD expression and clinical features of glioma patients.
DOI: 10.6084/m9.figshare.22624822
title: Additional file 2 of Genome-wide identification and expression analysis of DREB family genes in cotton

description: Additional file 2: Table S2. List of syntenic gene pairs.
DOI: 10.6084/m9.figshare.22624948.v1
title: Additional file 6 of circMMD reduction following tumor treating fields inhibits glioblastoma progression through FUBP1/FIR/DVL1 and miR-15b-5p/FZD6 signaling

description: Additional file 6: Table S5. Candidate proteins extracted by circMMD sense probe.
DOI: 10.6084/m9.figshare.22624945.v1
title: Additional file 5 of circMMD reduction following tumor treating fields inhibits glioblastoma progression through FUBP1/FIR/DVL1 and miR-15b-5p/FZD6 signaling

description: Additional file 5: Table S4. Differentially expressed genes between circMMD knockdown and NC groups.
DOI: 10.6084/m9.figshare.22622588.v1
title: Additional file 3 of Analysis of serum reproductive hormones and ovarian genes in pubertal female goats

description: Additional file 3: Table S2. Details of DEGs.
DOI: 10.5258/soton/d1780
title: Dataset for the article: Experimental characterization of an O-band bismuth-doped fiber amplifier

description: This dataset contains:

Sheet 1: 
Fig. 2. (b) an example of electrical power spectra measured by the RFSA that were used to determine the electrical NF of the BDFA at the wavelength of 1350nm and the input power (Pin) = -20dBm.
col(A) = Frequnecy (HZ)
col(B) = RFSA_cal (dBm)
col(C) = RFSA_meas (dBm)
col(D) = RFSA_ther (dBm)

Sheet 2:
Fig. 3. (a) frequency dependent NF of the BDFA (Pin=-20dBm).
col(A) = Frequency (Hz) 
col(B) = NF_1310nm (dB)
col(C) = NF_1330nm (dB)
col(D) = NF_1350nm (dB)
col(E) = NF_1360nm (dB)

Sheet 3:
Fig. 3. (b) averaged NF of the BDFA as it varies with wavelength (Pin=-20dBm).
(Note - this is a double y-axis plot)
col(A) = x1:Wavelength (nm) 
col(B) = y1:NF (dB) 
col(C) = x2:Wavelength (nm) 
col(D) = y2:Gain (dB)

Sheet 4:
Fig. 3. (c) frequency dependent NF of the SOA (Pin=-20dBm).
col(A) = Frequency (Hz) 
col(B) = NF_1310nm (dB) 
col(C) = NF_1330nm (dB) 
col(D) = NF_1350nm (dB) 
col(E) = NF_1360nm (dB)

Sheet 5:
Fig. 3. (d) averaged NF of the SOA as it varies with wavelength (Pin=-20dBm).
(Note - this is a double y-axis plot)
col(A) = x1:Wavelength (nm) 
col(B) = y1:NF (dB) 
col(C) = x2:Wavelength (nm) 
col(D) = y2:Gain (dB)

Sheet 6:
Fig. 4. Averaged NF of the BDFA at the wavelength of 1350nm as it varies with input power.
col(A) = Pin (dBm) 
col(B) = Avg NF BDFA at 1350nm (dB)

Sheet 7:
Fig. 5. (b) gain tilt results.
col(A) = Wavelength (nm) 
col(B) = -5dBm-Static (dB/nm) 
col(C) = 0dBm-Static (dB/nm) 
col(D) = 5dBm-Static (dB/nm) 
col(E) = 10dBm-Static (dB/nm) 
col(F) = -5dBm-Dynamic (dB/nm) 
col(G) = 0dBm-Dynamic (dB/nm) 
col(H) = 5dBm-Dynamic (dB/nm) 
col(I) = 10dBm-Dynamic (dB/nm)

Sheet 8:
Fig. 6. (b) power excursion of the small probe signal as a function of the modulation frequency.
(Note - this is a double y-axis plot)
col(A) = x1:BDFA - Mod Freq (kHz) 
col(B) = y1:BDFA - Power excursion (dB) 
col(C) = x2:SOA - Mod Freq (kHz) 
col(D) = y2:SOA - Power excursion (dB)

Sheet 9:
Fig. 6. (b) inset shows the optical signals modulated at 50kHz, as observed on the OSC.
(Note - this is a double y-axis plot)
col(A) = x1:Amplified saturating signal - Time (sec)
col(B) = y1:Amplified saturating signal - Normalised amplitude
col(C) = x2:Probe with x10 magnification and vertical offet - Time (sec) 
col(D) = y2:Probe with x10 magnification and vertical offet - Amplitude

Sheet 10:
Fig. 7. (b)PDG results of the BDFA at 1350nm with varied input power.
col(A) = Input power (dBm) 
col(B) = PDG (dB)

Sheet 11:
Fig. 7. (c) PDG results of the BDFA at 1350nm wavelength dependent PDG at -10-dBm input power.
col(A) = Wavelength (nm)
col(B) = PDG (dB)
DOI: 10.6084/m9.figshare.22624943
title: Additional file 1 of Mitochondrial metabolism of the facultative parasite Chilodonella uncinata (Alveolata, Ciliophora)

description: Additional file 1: Table S1. Primers used in this study. Table S2. COG annotation results. Table S3. Annotation results of mitochondria metabolism.
DOI: 10.6084/m9.figshare.21583005
title: supplementary Table 2

description: supplementary Table 2
DOI: 10.6084/m9.figshare.22624967
title: Additional file 1 of A novel feedback regulated loop of circRRM2-IGF2BP1-MYC promotes breast cancer metastasis

description: Additional file 1: Fig. S1. Analysis of four candidate circRNAs and enrichment analysis of parent genes. Fig. S2. The mRNA levels of hsa_circ_0052582, hsa_circ_0058113, hsa_circ_0058148, and hsa_circ_0060551 in patients with BC from the GEO dataset (GSE111504). Fig. S3. The mRNA levels of hsa_circ_0052582, hsa_circ_0058113, hsa_circ_0058148, and hsa_circ_0060551 in patients with BC at different T stages from the GEO dataset (GSE111504). Fig. S4. The mRNA levels of hsa_circ_0052582, hsa_circ_0058113, hsa_circ_0058148, and hsa_circ_0060551 in patients with BC at different N stages from the GEO dataset (GSE111504). Fig. S5. CircRNA-miRNA-mRNA ceRNA network. Fig. S6. Expression level of circRRM2/IGF2BP1/MYC in BC and the migration phenotype of miR-27b-3p/miR-31-5p inhibitor in BC cells. Overexpression (A) or knockout (B) efficiency of circRRM2 in BT-549 and MDA-MB-231 was verified by RT qPCR. (C) The levels of IGF2BP1 in BC cells. (D) Expression level of MYC in BC tissues. (E) Correlation analysis of circRRM2 and MYC in BC tissues. (F-G) circRRM2 knockdown abolished the suppression of cell migration treated with miR-27b-3p/miR-31-5p inhibitor. BT-549 cells were transfected with miR-27b-3p (F) or miR-31-5p (G) inhibitor, and the scratch wound healing assay was performed to measure the ability of cell migration. The rescue assay was conducted by co-transfecting the circRRM2 plasmid. *P &lt; 0.05, **P &lt; 0.01, ***P &lt; 0.001. Fig. S7. Prediction and prognostic value of target genes binding with both miR-27b-3p and miR-31-5p. Fig. S8. Prognostic value of target genes binding with both miR-27b-3p and miR-31-5p. *P &lt; 0.05, **P &lt; 0.01, ***P &lt; 0.001. Fig. S9. The transwell assay in BC cell transfected with circRRM2 plasmid and IGF2BP1 siRNA. The transwell assay was performed to detect the rescue effect of overexpression of circRRM2 on IGF2BP1 knockdown in BT-549 (A) or MDA-MB-231 (B) cells. Fig. S10. Calibration plot of the nomogram to predict the probability of the OS in patients with BC at 1, 3, and 5 years. Fig. S11. Analysis of immune cell infiltration related to IGF2BP1 in patients with BC. (A) Lollipop plot shows the correlation between IGF2BP1 level and immunocytes infiltration. (B) Correlations between IGF2BP1 and immune checkpoint-related genes. (C) Scatter plot of correlation between IGF2BP1 and immunocytes infiltration. (D) KM curve of immunocytes infiltration status and OS in patients with BC. (E) Comparison of immunocytes infiltration related with copy number variation of IGF2BP1. *P &lt; 0.05, **P &lt; 0.01, ***P &lt; 0.001. Fig. S12. Mutational analysis of IGF2BP1. (A) The oncoprint of IGF2BP1 was obtained using cBioPortal. (B) Analysis of PTM sites in IGF2BP1. Fig. S13. Network of candidates binding to IGF2BP1 constructed using the BioGRID database. Table S1. Primers used for qRT-PCR. Table S2. The sequences of siRNAs.
DOI: 10.6084/m9.figshare.19485929
title: Supplementary document for Single longitudinal mode lasing near the exceptional point in a fiber laser using a tunable isolator - 5763839.pdf

description: Supplemental 1
DOI: 10.6084/m9.figshare.19485929.v2
title: Supplementary document for Single longitudinal mode lasing near the exceptional point in a fiber laser using a tunable isolator - 5763839.pdf

description: Supplemental 1
DOI: 10.6084/m9.figshare.19485929.v1
title: Supplementary document for Single longitudinal mode lasing near the exceptional point in a fiber laser using a tunable isolator - 5763839.pdf

description: Supplemental 1
DOI: 10.6084/m9.figshare.22625021.v1
title: Additional file 2 of Comparison of long-term outcomes of stereotactic body radiotherapy (SBRT) via Helical tomotherapy for early-stage lung cancer with or without pathological proof

description: Additional file 2: Table S1. Probability of malignancy.
DOI: 10.6084/m9.figshare.22624972.v1
title: Additional file 2 of FBXW7 loss of function promotes esophageal squamous cell carcinoma progression via elevating MAP4 and ERK phosphorylation

description: Additional file 2. The sgRNA sequences. Primers sequences for plasmid construction. Primer sequences for mutation sequencing. Primer sequences for the quantitative RT-PCR. Relationship between protein overexpression and clinicopathologic parameters in tissues. Relationship between protein overexpression and clinicopathologic parameters in tissues. The relationship between FBXW7 and MAP4 expression in ESCC tissues. Relationship between protein overexpression and clinicopathologic parameters in tissues. Prognostic significance from cox proportional hazards model.
DOI: 10.6084/m9.figshare.22624936
title: Additional file 2 of circMMD reduction following tumor treating fields inhibits glioblastoma progression through FUBP1/FIR/DVL1 and miR-15b-5p/FZD6 signaling

description: Additional file 2: Table S1. Information of the primers, siRNAs/shRNAs and antibodies used in the study.
DOI: 10.6084/m9.figshare.22624972
title: Additional file 2 of FBXW7 loss of function promotes esophageal squamous cell carcinoma progression via elevating MAP4 and ERK phosphorylation

description: Additional file 2. The sgRNA sequences. Primers sequences for plasmid construction. Primer sequences for mutation sequencing. Primer sequences for the quantitative RT-PCR. Relationship between protein overexpression and clinicopathologic parameters in tissues. Relationship between protein overexpression and clinicopathologic parameters in tissues. The relationship between FBXW7 and MAP4 expression in ESCC tissues. Relationship between protein overexpression and clinicopathologic parameters in tissues. Prognostic significance from cox proportional hazards model.
DOI: 10.6084/m9.figshare.20001153
title: Additional file 1 of A genetic correlation scan identifies blood proteins associated with bone mineral density

description: Additional file 1: Supplementary Table 1. The basic characteristics of the participants included in per cohort and age strata.