cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7654313.v1
title: Additional file 4: of Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

description: Table S8. Excel document containing GO term analysis output for BP, CC and MF classes and all DEG lists. (XLSX 347 kb)
DOI: 10.6084/m9.figshare.7654298
title: Additional file 2: of Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

description: Gene coverage calculation (Table S1), reciprocal best BLAST paring (Table S2), full annotation and RPKM tables for the genome method (Table S3) and transcriptome method (Table S4). Comparison of abundance of transcripts (genome method vs. transcriptome method) belonging to: the 5584 GO terms shared between both methods (Table S5); or the 1663 overlapping GO terms of the DEG sets (Table S6). Table S7 shows a summary of significantly under- and over-represented GO terms associated with DEG lists. Table S9 contains a list of primers used for qRT-PCR. (XLSX 10033 kb)
DOI: 10.7284/102878
title: Fluorometer data collected during research cruise CH1009 using a Turner 10-AU instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7654298.v1
title: Additional file 2: of Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

description: Gene coverage calculation (Table S1), reciprocal best BLAST paring (Table S2), full annotation and RPKM tables for the genome method (Table S3) and transcriptome method (Table S4). Comparison of abundance of transcripts (genome method vs. transcriptome method) belonging to: the 5584 GO terms shared between both methods (Table S5); or the 1663 overlapping GO terms of the DEG sets (Table S6). Table S7 shows a summary of significantly under- and over-represented GO terms associated with DEG lists. Table S9 contains a list of primers used for qRT-PCR. (XLSX 10033 kb)
DOI: 10.6084/m9.figshare.7654286
title: Additional file 1: of Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

description: de novo transcriptome assembly. The 34,784 longest gene sequences from each Trinity gene cluster. (FA 28331 kb)
DOI: 10.7284/102848
title: GNSS (Global Navigation Satellite System) data collected during research cruise CH1009 using a Northstar 952X instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7654286.v1
title: Additional file 1: of Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

description: de novo transcriptome assembly. The 34,784 longest gene sequences from each Trinity gene cluster. (FA 28331 kb)
DOI: 10.7284/102888
title: Gyrocompass data collected during research cruise CH1009 using a Sperry MK-37 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103236
title: Meteorological Station data collected during research cruise CH1009 using a RM Young 26700 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102538
title: Singlebeam Echosounder data collected during research cruise CH1009 using a Furuno FCV-292 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7654247
title: Additional file 3: of Maternal knowledge and attitudes towards complementary feeding in relation to timing of its initiation in rural Bangladesh

description: Analytic data set. (XLS 242 kb)
DOI: 10.6084/m9.figshare.7654247.v1
title: Additional file 3: of Maternal knowledge and attitudes towards complementary feeding in relation to timing of its initiation in rural Bangladesh

description: Analytic data set. (XLS 242 kb)
DOI: 10.7284/102536
title: Winch data collected during research cruise CH1009 using a Markey DUSH-5 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102559
title: Anemometer data collected during research cruise CH1010 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7654232
title: Additional file 2: of Does the provision of a DVD-based audio-visual presentation improve recruitment in a clinical trial? A randomised trial of DVD trial invitations

description: Dataset. De-identified dataset used for analysis. (CSV 21 kb)
DOI: 10.6084/m9.figshare.7654232.v1
title: Additional file 2: of Does the provision of a DVD-based audio-visual presentation improve recruitment in a clinical trial? A randomised trial of DVD trial invitations

description: Dataset. De-identified dataset used for analysis. (CSV 21 kb)
DOI: 10.7284/102560
title: Anemometer data collected during research cruise CH1010 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102452
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise CH1010 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102449
title: Fluorometer data collected during research cruise CH1010 using a Turner 10-AU instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102858
title: GNSS (Global Navigation Satellite System) data collected during research cruise CH1010 using a Northstar 952X instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102451
title: Gyrocompass data collected during research cruise CH1010 using a Sperry MK-37 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102561
title: Meteorological Station data collected during research cruise CH1010 using a RM Young 26700 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102182
title: Singlebeam Echosounder data collected during research cruise CH1010 using a Knudsen 3260 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102450
title: Singlebeam Echosounder data collected during research cruise CH1010 using a Furuno FCV-292 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102447
title: Speedlog data collected during research cruise CH1010 using a Furuno DS-80 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7654109
title: Additional file 1: of Genome-wide Association Study of a Panel of Vietnamese Rice Landraces Reveals New QTLs for Tolerance to Water Deficit During the Vegetative Phase

description: Table S1. List of the 190 accessions used in the experiment. Table S2. Experiment map. Table S3. Standard evaluation score (SES) of drought sensitivity and recovery at vegetative stage (IRRI, 2002). Table S4. Abbreviations and full name of traits monitored in this study. Table S5. Descriptive statistics of the full panel for selected traits. RWC_T0, relative water content before drought treatment; RWC_T1 to RWC_T4, relative water content after 1 to 4 weeks of drought stress; RWC_S1 to RWC_S4, slope of relative water content after 1 to 4 weeks of drought stress; Score1 to Score4, drought sensitivity score after 1 to 4 weeks of drought stress; Recovery, recovery ability; RCGR, relative crop growth rate. Table S6. Correlation matrix between examined traits in the full panel computed by Pearson method (below the diagonal). Probabilities above the diagonal (in bold, significant at P
DOI: 10.7284/102448
title: Winch data collected during research cruise CH1010 using a Markey DUSH-5 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7654103
title: Additional file 6: of Mapping the â early salinity responseâ triggered proteome adaptation in contrasting rice genotypes using iTRAQ approach

description: Table S3. List of RTPCR primers and their sequences (5'to 3') used in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7654103.v1
title: Additional file 6: of Mapping the â early salinity responseâ triggered proteome adaptation in contrasting rice genotypes using iTRAQ approach

description: Table S3. List of RTPCR primers and their sequences (5'to 3') used in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7654091
title: Additional file 4: of Mapping the â early salinity responseâ triggered proteome adaptation in contrasting rice genotypes using iTRAQ approach

description: Table S2. Differentially expressed proteins in shoot tissues of Pokkali w.r.t IR64 which are commonly appearing under non stress and stress conditions. (XLSX 13 kb)
DOI: 10.7284/104834
title: Anemometer data collected during research cruise CH1011 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7654085
title: Additional file 3: of Mapping the â early salinity responseâ triggered proteome adaptation in contrasting rice genotypes using iTRAQ approach

description: Table S1. Highly differentially expressed proteins (&gt;60 fold) in shoot and root tissues. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7654091.v1
title: Additional file 4: of Mapping the â early salinity responseâ triggered proteome adaptation in contrasting rice genotypes using iTRAQ approach

description: Table S2. Differentially expressed proteins in shoot tissues of Pokkali w.r.t IR64 which are commonly appearing under non stress and stress conditions. (XLSX 13 kb)
DOI: 10.7284/104835
title: Anemometer data collected during research cruise CH1011 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7654085.v1
title: Additional file 3: of Mapping the â early salinity responseâ triggered proteome adaptation in contrasting rice genotypes using iTRAQ approach

description: Table S1. Highly differentially expressed proteins (&gt;60 fold) in shoot and root tissues. (XLSX 18 kb)
DOI: 10.7284/104833
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise CH1011 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104828
title: Fluorometer data collected during research cruise CH1011 using a Turner 10-AU instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104836
title: GNSS (Global Navigation Satellite System) data collected during research cruise CH1011 using a Northstar 952X instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104832
title: Gyrocompass data collected during research cruise CH1011 using a Sperry MK-37 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7654031
title: Additional file 3: of Genomic introgression through interspecific hybridization counteracts genetic bottleneck during soybean domestication

description: Table S2. Proportions of introgressed fragments in chromosomal arms and pericentromeric regions in the examined soybean population. (XLSX 12â KB). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7654031.v1
title: Additional file 3: of Genomic introgression through interspecific hybridization counteracts genetic bottleneck during soybean domestication

description: Table S2. Proportions of introgressed fragments in chromosomal arms and pericentromeric regions in the examined soybean population. (XLSX 12â KB). (XLSX 11 kb)
DOI: 10.7284/104829
title: Meteorological Station data collected during research cruise CH1011 using a RM Young 26700 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7654016
title: Additional file 1: of Genomic introgression through interspecific hybridization counteracts genetic bottleneck during soybean domestication

description: Table S1. Identities, codes, introgression rates, and genotypes of the accessions used in this study (XLSX 19â KB).
DOI: 10.6084/m9.figshare.7654016.v1
title: Additional file 1: of Genomic introgression through interspecific hybridization counteracts genetic bottleneck during soybean domestication

description: Table S1. Identities, codes, introgression rates, and genotypes of the accessions used in this study (XLSX 19â KB).
DOI: 10.7284/104831
title: Singlebeam Echosounder data collected during research cruise CH1011 using a Furuno FCV-292 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104830
title: Speedlog data collected during research cruise CH1011 using a Furuno DS-80 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7653818
title: A new journal ranking method: the reputation analysis of citation behavior model

description: The raw data are divided into two parts: one is the ten year citation data of the top journal (D1.rar), and the other is the citation data of the ten selected journals (D2.rar). These raw data are downloaded from Web of Science. The remaining data include the matrix after the word frequency extraction of top journal (D3.rar), the preprocessing results of top journal data (D4.xlsx), the matrix after the word frequency extraction of ten journals (D5. rar), the JR and IF of ten journals (D6.xlsx), the ACR values of ten journals (D7.xlsx), the CDI and ACR of ten journals (D8.xlsx), RCR values under different p values (D9.xlsx), the inter-citation data of ten journals (D10.xlsx), and the ranking results of various ranking methods (D11.xlsx).
DOI: 10.7284/102997
title: Anemometer data collected during research cruise CH1110 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102998
title: Anemometer data collected during research cruise CH1110 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7653500
title: Whole Exome Sequencing and Whole Transcriptome Sequencing of Malignant Peritoneal Mesothelioma

description: Whole exome sequencing data of 19 snap-frozen peritoneal mesothelioma (tumor) samples and 16 matched normal samples. Sequencing library was prepared using Ion AmpliSeq Exome RDY Library Preparation. Samples were sequenced on the Ion Proton System using the Ion PI Hi-Q Sequencing 200 Kit and Ion PI v3 chip.<br>RNA-seq data of 15 snap-frozen tissue of peritoneal mesothelioma. The strand specific RNA library prepared using TruSeq (Illumina) and pair-end sequencing performed in Illumina HiSeq 4000. The datasets contains paired fastq files for each of 15 tumor samples.<br>
DOI: 10.6084/m9.figshare.7653503
title: Mass Spectrometry of Malignant Peritoneal Mesothelioma

description: <b>HostingRepository</b>: PRIDE<b>AnnounceDate</b>: 2018-12-11<b>AnnouncementXML</b>: Submission_2018-12-11_02:42:51.xml<b>DigitalObjectIdentifier</b>:<b>ReviewLevel</b>: Peer-reviewed dataset<b>DatasetOrigin</b>: Original data<b>RepositorySupport</b>: Unsupported dataset by repository<b>SpeciesList</b>: scientific name: Homo sapiens (Human); NCBI TaxID: 9606;<b>ModificationList</b>: monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue<b>Instrument</b>: LTQ Orbitrap Elite
DOI: 10.6084/m9.figshare.7653503.v1
title: Mass Spectrometry of Malignant Peritoneal Mesothelioma

description: <b>HostingRepository</b>: PRIDE<b>AnnounceDate</b>: 2018-12-11<b>AnnouncementXML</b>: Submission_2018-12-11_02:42:51.xml<b>DigitalObjectIdentifier</b>:<b>ReviewLevel</b>: Peer-reviewed dataset<b>DatasetOrigin</b>: Original data<b>RepositorySupport</b>: Unsupported dataset by repository<b>SpeciesList</b>: scientific name: Homo sapiens (Human); NCBI TaxID: 9606;<b>ModificationList</b>: monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue<b>Instrument</b>: LTQ Orbitrap Elite
DOI: 10.7284/102539
title: Fluorometer data collected during research cruise CH1110 using a Turner 10-AU instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102857
title: GNSS (Global Navigation Satellite System) data collected during research cruise CH1110 using a Northstar 952X instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7653470
title: A simple spreadsheet for estimating low-effect concentrations and associated confidence intervals with logistic dose response curves

description: A simple spreadsheet has been developed to estimate low effect concentrations for continuous responses (e.g. plant weights and heights). The spreadsheet allows the user to enter data in Excel (a package with which they familiar). The user enters sensible starting values using suggestions and interactive graphics, which increases the likelihood of finding an optimal solution.<br> The EC of interest is graphically presented along with it’s associated 95% confidence intervals (CIs). The benefits of this spreadsheet program include: * Graphical and tabular presentation of results , starting values and confidence intervals. * Regularly finds a solution die to graphical interface. * Wide variety of uses (e.g. bio-availability and toxicity of metals or pesticides to plants, worms and a range of indicator organisms and aquatic species)<br>This was presented at SETAC Asia/Pacific Conference, NZ 28/Sep/2003-1/Oct/2003. Requests for the spreadsheet 15 years later continue to encourage the spreadsheet authors.<br><br>
DOI: 10.7284/102545
title: Gyrocompass data collected during research cruise CH1110 using a Sperry MK-37 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7653419
title: Solar water heating for a bath calculator

description: An Excel spreadsheet with a simple calculation for the amount of solar PV energy required to fill a bath with hot water. <br>The model makes assumptions about the initial and end temperature requirements, and allows the size and depth of the bath the be entered. <br>
DOI: 10.6084/m9.figshare.7653419.v1
title: Solar water heating for a bath calculator

description: An Excel spreadsheet with a simple calculation for the amount of solar PV energy required to fill a bath with hot water. <br>The model makes assumptions about the initial and end temperature requirements, and allows the size and depth of the bath the be entered. <br>
DOI: 10.7284/102799
title: Meteorological Station data collected during research cruise CH1110 using a RM Young 26700 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7653383
title: mid resolution wind tunnel

description: mid resolution wind tunnel
DOI: 10.6084/m9.figshare.7653383.v1
title: mid resolution wind tunnel

description: mid resolution wind tunnel
DOI: 10.7284/102184
title: Singlebeam Echosounder data collected during research cruise CH1110 using a Knudsen 3260 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102544
title: Singlebeam Echosounder data collected during research cruise CH1110 using a Furuno FCV-292 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7653227
title: The phospholipid flippase DnfD localizes to late Golgi and is involved in asexual differentiation in <i>Aspergillus nidulans</i>

description: The maintenance of cell shape requires finely tuned and robust vesicle trafficking in order to provide sufficient plasma membrane materials. The hyphal cells of filamentous fungi are an extreme example of cell shape maintenance due to their ability to grow rapidly and respond to the environment while keeping a relatively consistent shape. We have previously shown that two phospholipid flippases, which regulate the asymmetry of specific phospholipids within the plasma membrane, are important for hyphal growth in <i>Aspergillus nidulans</i>. Here, we examine the rest of the phospholipid flippases encoded by <i>A. nidulans</i> by obtaining single and double deletions of all four family members, <i>dnfA, dnfB, dnfC</i>, and <i>dnfD</i>. We find that deleting <i>dnfC</i> does not impart a noticeable phenotype, by itself or with other deletions, but that <i>dnfD</i>, the homolog of the essential yeast gene <i>neo1</i>, is important for conidiation. <i>dnfD</i> deletion mutants form misshapen conidiophore vesicles that are defective in metulae formation. We localize DnfD to late Golgi equivalents, where it appears just before dissociation of this organelle. We propose that DnfD functions in a trafficking process that is specifically required for the morphological changes that take place during conidiation.
DOI: 10.7284/102543
title: Speedlog data collected during research cruise CH1110 using a Furuno DS-80 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102540
title: Winch data collected during research cruise CH1110 using a Markey DUSH-5 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7653119
title: Biochemical Reconstitution of UV-induced Mutational Processes

description: This dataset is associated with the paper entitled "Biochemical Reconstitution of UV-induced Mutational Processes", which is published in Nucleic Acid Research in 2019.<br><br>"Fastq.zip" contains all fastaq raw data files that have been used in the paper. Each fastaq file name contains NGS ID (18G, 17E etc) and barcode # (BCxx). These identifications match with Table S2 of the paper, which summarizes experimental conditions. <br>"NGS Protocol 3.4.docx" is our laboratory protocol for basic analysis of our NGS data. This protocol is designed for new student to setup software and compute mutation frequency from fastaq data. Protocol uses three Excel template files with macro, which are also included in this dataset. The protocol and macros are designed for the specific data analysis, not for general use. Macro works only for specific template sequences used in the paper.<br>