cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23668/psycharchives.4419
title: Food Choices and Changes of Mind (Mousetracking) in Anorexia Nervosa, Bulimia Nervosa and Healthy Controls
title: Dataset for: I change my mind to get better: Mouse-tracing based micro-analysis of food choice processes reveals differences between Anorexia Nervosa and Bulimia Nervosa during inpatient treatment

description: Dataset for: Georgii, C., Eichin, K. N., Richard, A., Schnepper, R., Naab, S., Voderholzer, U., Treasure, J., & Blechert, J. (2022). I change my mind to get better: process tracing-based microanalysis of food choice processes reveals differences between anorexia nervosa and bulimia nervosa during inpatient treatment. Appetite, 168. https://doi.org/10.1016/j.appet.2021.105745
description: Food choice and its underlying processes is understudied in bulimia nervosa (BN) and anorexia nervosa (AN). Thus, we examined cognitive processes during food choice through mouse tracing in AN (n = 36) and BN (n = 27) undergoing inpatient treatment. Both patient groups and matched healthy controls (HC, n = 59) made 153 binary food choices before rating all foods on their liking and calorie density. Choice outcomes and corresponding mouse movements were modelled as a function of inpatient treatment stage in our analyses. Compared to patients with BN and HC, those with AN showed a clear calorie avoidance on most trials. Yet, mouse paths in AN patients early in treatment, revealed a late direction reversal (‘change of mind’, CoM) on high-calorie choices. AN patients later in treatment, by contrast, showed fewer CoM alongside more choices for – and liking of – high-calorie foods. Patients with BN showed more CoM trials during low-calorie choices and low-calorie choices were more frequent in patients later in treatment. Thus, relative to patients early in treatment, patients who are later in treatment show less of the overall group pattern of consistently choosing low-calorie food (AN) or high-calorie food (BN). Less cognitive regulation (fewer CoM trials) went along with higher liking for high-calorie foods in AN. These cross-sectional differences between AN early and late in treatment might reflect the formation of healthier habits. In addition, clear patient group differences suggest more specific treatment strategies.
DOI: 10.6084/m9.figshare.c.3627509_d6.v1
title: Additional file 2: Table S1. of Modulation of the human gut microbiota by dietary fibres occurs at the species level

description: Proportional abundance of each operational taxonomic unit (OTU; in %) per sample (97 % OTU cut-off). (XLSX 1538 kb)
DOI: 10.6084/m9.figshare.c.3627530_d2.v1
title: Additional file 2: of Molecular characterization of irinotecan (SN-38) resistant human breast cancer cell lines

description: 32 genes that are differentially expressed in both the MDA-MB-231 and the MCF7 model system. (XLSX 4123Â kb)
DOI: 10.6084/m9.figshare.c.3627530_d3.v1
title: Additional file 4: of Molecular characterization of irinotecan (SN-38) resistant human breast cancer cell lines

description: The top 50 overexpressed genes in the SN-38 resistant MCF7 cells. (XLSX 62Â kb)
DOI: 10.17863/cam.45121
title: Dataset for: Characterizing optical fiber transmission matrices using metasurface reflector stacks for lensless imaging without distal access

description: Code to reconstruction transmission matrices from reflection matrices, as well as some sample matrices used to produce Figure 8 of the paper.
DOI: 10.6084/m9.figshare.c.3627530_d4.v1
title: Additional file 3: of Molecular characterization of irinotecan (SN-38) resistant human breast cancer cell lines

description: The top 50 overexpressed genes in the SN-38 resistant MDA-MB-231 cells. (XLSX 61Â kb)
DOI: 10.17863/cam.87123
title: Research data supporting "Nanopore microscope identifies RNA isoforms with structural colors"

description: This research data supports “Nanopore microscope identifies RNA isoforms with structural colors” which is accepted in “Nature Chemistry”. The data set contains the source data for each figure (Figure 1 – Figure 5). LabVIEW code was used to collect and process data recorded using Axopatch 200B amplifier. Single events were isolated from the raw ionic current traces using a LabVIEW code and exported as Excel files.
DOI: 10.6084/m9.figshare.c.3627545_d2.v1
title: Additional file 2: of Examining Plasmodium falciparum and P. vivax clearance subsequent to antimalarial drug treatment in the Myanmar-China border area based on quantitative real-time polymerase chain reaction

description: Mutation type of each of the targeted codon positions of respective genes as well as mdr1 gene copy number among fast and delay clearance P. falciparum samples. (XLSX 15Â kb)
DOI: 10.17863/cam.23438
title: Research data supporting "The spatial layout of plant aerial stem cell niches is controlled by the interaction of transcription factors".

description: Expression of HAM1 and HAM2 in the shoot apical meristem of A. thaliana. pHAM1::YPET-N7 and pHAM2::YPET-N7 reporter lines (Ler background) in various light and nutrient conditions.
DOI: 10.17863/cam.58236
title: Research data supporting "A release from developmental bias accelerates morphological diversification in butterfly eyespots"

description: These files are photographs show to dorsal forewings of butterflies of the species Heteropsis iboina following surgical grafting experiments on developing pupae. The methodology is described in detail in the accompanying paper. The names of the folders and files contains the code ‘dII’, ‘dIII’, ‘dIV’, ‘pII’ and ‘pIII’ as a guide to where on the wings the grafting surgeries were done. ‘p’ means ‘proximal’ and ‘d’ means ‘distal’. ‘II’, ’III’ and ‘IV’ is a positional descriptor to wing cells (please refer to text in paper). The file names contain a further ID number made up of capital letters or numbers to enable identification of individual specimens. Finally there is an additional ‘x’ behind some file names in the folders called ‘dII’ and ‘pII’, this is signifying wings treated to a further experimental attempt to cauterise the normal anterior eyespot to enable a cleaner visualisation of the grafted eyespots. This cautery work was largely unsuccessful as the focus of the eyespot was hard to locate, but explains the sometimes missing eyespots in files labelled with ‘x’.
DOI: 10.6084/m9.figshare.c.3627593_d3.v1
title: Additional file 2: of Patterns of livestock activity on heterogeneous subalpine pastures reveal distinct responses to spatial autocorrelation, environment and management

description: Contains the dataset of study area A. (TXT 184 kb)
DOI: 10.6084/m9.figshare.c.3627593_d4.v1
title: Additional file 3: of Patterns of livestock activity on heterogeneous subalpine pastures reveal distinct responses to spatial autocorrelation, environment and management

description: Contains example R code for the spatial regression with INLA. (TXT 2 kb)
DOI: 10.17863/cam.43684
title: Data supporting "Detection of nucleic acids and other low abundance components in native bone and osteosarcoma extracellular matrix by isotope enrichment and DNP-enhanced NMR"

description: NMR data in Bruker TOPSPIN format, readable with the free (to academic users) downloadable TOPSPIN data processing package. The key to all the raw datasets is in the Word file "Key to Raw Data".
DOI: 10.17863/cam.93878
title: Research data supporting "Drosophila SPG12 ortholog, reticulon-like 1, governs presynaptic ER organization and Ca2+ dynamics"

description: The supporting data include microscopy images, quantitative analyses of images, and statistical analyses, for each figure presented in the linked paper. See the Readme.pdf file for a detailed description of the contents of each folder and for a list of file formats.
DOI: 10.17863/cam.43502
title: Stabilization of AgI’s polar surfaces by the aqueous environment, and its implications for ice formation (data set)

description: See also the README file. This dataset contains three sub-directories: (1) D0o0 -- contains input files for performing simulations at D = 0 (2) DCNC -- contains input files for performing simulations at DCNC (2) ECNC -- contains input files for performing simulations at ECNC All simulations can be run with the LAMMPS code (16 Mar 2018). See also https://github.com/uccasco/FiniteFields for additional source code required to apply the E and D fields. Each directory contains the followings files: (a) init.data -- initial structure for pure water in contact with AgI. (b) in.tip4p2005.equil -- input file for performing the initial equilibration of the system at 252K. (c) in.tip4p2005.cool -- input file for performing the cooling ramp simulation between 252K and 242K. (d) in.tip4p2005.constT -- input file for performing a constant T simulation at 242K. The above files perform simulations with an immobile AgI crystal. The DCNC additionally contains a file "in.tip4p2005.constT.mob" which demonstrates the changes needed to perform a simulation with a mobile AgI crystal. (The other equilibration and cooling input files can be similarly adapted.) The ECNC and DCNC directories also contain a file "init.data.electrolyte" which contains an initial structure for NaCl electrolyte in contact with AgI. Please see Table S1 of the article for values of D and E fields used. AgI.table -- tabulated interatomic potential for AgI crystal.
DOI: 10.6084/m9.figshare.c.3627653_d1.v1
title: Additional file 10: of LRR-RLK family from two Citrus species: genome-wide identification and evolutionary aspects

description: Statistics of the tandem duplicated paralogues from C. sinensis LRR-XII. Comparative data generated by Blastp using all C. sinensis LRR-XII. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3627653_d4.v1
title: Additional file 9: of LRR-RLK family from two Citrus species: genome-wide identification and evolutionary aspects

description: Statistics of the tandem duplicated paralogues sequences from C. clementina LRR-XII. Comparative data generated by Blastp using all C. clementina LRR-XII. (XLSX 13 kb)
DOI: 10.15468/dl.5ybg4k
title: Occurrence Download

description: A dataset containing 159782230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is EOD – eBird Observation Dataset",
 {
 "or" : [
 "Geometry POLYGON((-74.8164 40.11639,-72.96899 40.11639,-72.96899 41.12283,-74.8164 41.12283,-74.8164 40.11639))",
 "Geometry POLYGON((-78.7282 35.86095,-70.9457 35.86095,-70.9457 42.12447,-78.7282 42.12447,-78.7282 35.86095))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2001"
 ]
}

 The dataset includes 159782230 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037844-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.64714
title: Research data supporting The Reactivity of an Inorganic Glass Melt with ZIF-8

description: This dataset contains all experimental results published in the work: The Reactivity of an Inorganic Glass Melt with ZIF-8, L. Longley et al., Dalton Trans., (2021), DOI: 10.1039/d1dt00152c This work explores the thermal behaviour of ZIF-8, Zn(meIm)2, in the presence of a sodium fluoroaluminophosphate glass melt. This system was probed through differential scanning calorimetry and thermogravimetric analysis. The structural integrity of ZIF-8 was then determined by a combination of powder X-ray diffraction, Fourier transform infra-red and 1H nuclear magnetic resonance spectroscopy. Scanning electron microscopy and image analysis were used to quantify the particle size distribution of the synthesised ZIF-8 framework. Due to the large variety of data types contained within this dataset individual read-me files detail necessary information for each separate data type.
DOI: 10.6084/m9.figshare.c.3627653_d9.v1
title: Additional file 12: of LRR-RLK family from two Citrus species: genome-wide identification and evolutionary aspects

description: Syntenic blocks (SBs) of LRR-XII from C. sinensis and C. clementina. SBs were obtained from genome collinearity and independent homology analysis. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3627653_d10.v1
title: Additional file 13: of LRR-RLK family from two Citrus species: genome-wide identification and evolutionary aspects

description: Amino acid sequences of human kinase proteins. Sequences used as outgroup in the phylogenetic analysis with Citrus and Arabidopsis LRR-RLKs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3627698_d4.v1
title: Additional file 9: of Transcriptomic responses of the basidiomycete yeast Sporobolomyces sp. to the mycotoxin patulin

description: Combined table of cuffdiff, Blast2GO and BLASTx outputs for Sporobolomyces sp. genes detected only in the presence of 5 μg/ml of PAT. DEGs have been sorted for FPKM expression values (from the highest to the lowest), and those with FPKM lower than 1.5 were discarded. BLASTx results with existing Sporobolomyces sp. genome annotation were useful to identify new genes detected in the present study, while BLASTx against SGD was necessary to identify Sporobolomyces sp. orthologs in yeast and to assign gene names accordingly; low homology (i.e. E-values positive or higher than 1E-3) was reported as NA, indicating that no S. cerevisiae orthologs of Sporobolomyces sp. DEGs were found. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3627653_d11.v1
title: Additional file 11: of LRR-RLK family from two Citrus species: genome-wide identification and evolutionary aspects

description: List of C. clementina and C. sinensis LRR-XII localized in cluster region. The chromosome distance of 200 kb was used as a reference to include the LRR-XII genes in the same cluster region. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3627719_d1.v1
title: Additional file 1: of Analysis of a spatial gene expression database for sea anemone Nematostella vectensis during early development

description: MATLAB files of standardized gene expression profiles derived from stored in situ hybridizations. The profiles are provided both as separate numerical arrays in labeled .mat files and as a two-column array of cells in the file “allarrs.mat”. For the separate arrays, the labels are the filenames; for the array of cells, the labels are the character arrays in the first column. The labels include the gene name, the developmental stage and, if applicable, the sequence number. For example, the file “admp-relatedbla1.mat” contains the variable “profile”, which is a 1×100 numerical array from the first image during the blastula of admp-related. This numerical array is also located in the second column of the 252×2 cell array called “expressiondata” in the file “allarrs.mat”, behind character array “admp-relatedbla1” in the first column. (cle = cleavage, bla = blastula, ega = early gastrula, mga = mid gastrula, lga = late gastrula, epl = early planula, pla = planula, lpl = late planula). The cell array has been converted to comma separated table “expressiontable.txt”, to be processed outside MATLAB and in modified MATLAB releases. The text file has been produced with the script “exportexpression.m” and can be restored to cell array “expressiondata0” in file “allarrs0.mat” with the script “importexpression.m”. (RAR 230 kb)
DOI: 10.6084/m9.figshare.c.3627719_d2.v1
title: Additional file 3: of Analysis of a spatial gene expression database for sea anemone Nematostella vectensis during early development

description: Subsequent expression domains of genes from an expression database. Pairs of subsequently available expression domains (third and fourth columns) are ordered in a Microsoft Excel spreadsheet table by their initial and final stages of development (first and second columns, respectively). The percentages (sixth column) are the relative frequencies (from the gene counts in the fifth column) for each pair of expression domains. A change from cylindrical expression pattern symmetry to biradial or bilateral symmetry is indicated in the seventh column with “symmetry break”. Changes of expression over major regions are indicated in the eighth column (appeared = expression is observed only in the second stage, major change = expression moved to another major region, minor change = expression in the second stage is limited to the same major region(s) as in the first stage, none = no expression is observed in both stages, vanished = expression is observed only in the first stage). (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3627653_d12.v1
title: Additional file 7: of LRR-RLK family from two Citrus species: genome-wide identification and evolutionary aspects

description: Pairwise list of orthologues LRR-XII subfamily members of C. clementina and C. sinensis. The colors represent the gene position in the same phylogenetic group (Fig.Â  2 ). * represents genes in clusters. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3627698_d6.v1
title: Additional file 5: of Transcriptomic responses of the basidiomycete yeast Sporobolomyces sp. to the mycotoxin patulin

description: Unprocessed Cuffdiff output of the RNAseq experiments performed for Sporobolomyces grown in the presence of 5 μg/ml of PAT. Where no Sporobolomyces gene models are indicated based on the previous JGI annotation (column C), it indicates a novel transcript identified following the transcriptomic analysis presented in this study. (XLSX 1622 kb)
DOI: 10.15468/dl.2u46u5
title: Occurrence Download

description: A dataset containing 21903 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Myioborus pictus (Swainson, 1829)"
 ]
}

 The dataset includes 21903 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037849-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3627653_d13.v1
title: Additional file 8: of LRR-RLK family from two Citrus species: genome-wide identification and evolutionary aspects

description: Classification of kinases from C. clementina and C. sinensis LRR-RLK as RD, non-RD and ACF. The kinases classification was done according to the presence or absence of the Arg (R) in the conserved HRD motif. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3627719_d3.v1
title: Additional file 2: of Analysis of a spatial gene expression database for sea anemone Nematostella vectensis during early development

description: Observed expression domains of genes with in situ hybridizations stored for multiple stages of embryonic development. The pattern descriptions are ordered in a Microsoft Access database spreadsheet. Shorthand notations: base = base of tentacle; cells = individual cells; syphonoglyph = syphonoglyph side; tuft = apical tuft; wall = body wall. “N/A” means no hybridization image and description are currently provided for this developmental stage. “?” means an entry in the expression summary is provided without a corresponding hybridization image. “none” means no gene expression is observed. “band” means expression is observed in a ring between the oral and aboral ends. “full” means expression is observed in the complete tissue layer. “biradial” means two disconnected expression domains are observed on opposite sides (suggesting a biradially symmetric pattern). “octoradial?” means expression is observed in eight separate domains, possibly suggesting octoradial symmetry. “one side” means expression is present in one side of the embryo, but this side (either the syphonoglyph side or the non-syphonoglyph side) is not indicated. (ACCDB 5268 kb)
DOI: 10.6084/m9.figshare.c.3627737_d1.v1
title: Additional file 1: of A multilocus molecular phylogeny for the avian genus Liocichla (Passeriformes: Leiothrichidae: Liocichla)

description: Table S1. Genbank accession numbers for all ingroup and outgroup sequences used in this study.
DOI: 10.6084/m9.figshare.c.3627698_d8.v1
title: Additional file 2: of Transcriptomic responses of the basidiomycete yeast Sporobolomyces sp. to the mycotoxin patulin

description: All new assembled Sporobolomyces sp. isoforms used for BLAST analyses. (TXT 34275Â kb)
DOI: 10.6084/m9.figshare.c.3627734_d1.v1
title: Additional file 1: of Community structure, seasonal variations and interactions between native and invasive cattle tick species in Benin and Burkina Faso

description: Effect of the co-infestation patterns on the distribution of tick attachment sites. (XLS 98 kb)
DOI: 10.15468/dl.bcgd4a
title: Occurrence Download

description: A dataset containing 42929 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Myioborus miniatus (Swainson, 1827)"
 ]
}

 The dataset includes 42929 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037848-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3627698_d9.v1
title: Additional file 10: of Transcriptomic responses of the basidiomycete yeast Sporobolomyces sp. to the mycotoxin patulin

description: Combined table of cuffdiff and BLASTx outputs for upregulated (Log2FC ≥ 2) and downregulated (Log2FC ≤ -2) DEGs detected for Sporobolomyces sp. grown in the presence of 50 μg/ml of PAT at OD595 of ~0.08. BLASTx against existing Sporobolomyces sp. genome annotation and SGD is also shown. DEGs have been sorted from the highest Log2FC value to the smallest. In bold are indicated DEGs found also for Sporobolomyces sp. incubated in the presence of 5 μg/ml of PAT reported in additional files 7 and 9. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3627770_d3.v1
title: Additional file 2: Table S2. of Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

description: Transcription start sites identified by differential RNA sequencing and automated annotation. (XLSX 489Â kb)
DOI: 10.7266/8tvxer5k
title: Water quality data collected from Wolf River and Jourdan River from 2022-01-05 to 2022-12-20
DOI: 10.6084/m9.figshare.c.3627779_d2.v1
title: Additional file 4: of Bacterial small RNAs in the Genus Rickettsia

description: List of Rickettsia species and strains used throughout this work. The list has been categorized into the rickettsial groups with the RefSeq ID listed in the next column. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3627770_d4.v1
title: Additional file 11: Table S10. of Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

description: Genes with antisense transcripts. (XLSX 20Â kb)
DOI: 10.17863/cam.46593
title: Supporting data for "Selective NMR Observation of the SEI–Metal Interface by Dynamic Nuclear Polarisation from Lithium Metal"

description: 1H, 7Li and 19F FIDs, Fourier transformed spectra, and metadata for the conventional and lithium metal DNP enhanced NMR of lithium metal microstructures and their SEI. The .zip file contains a folder system in the TopSpin format that has been organised by sample, as described in Supplementary Table 7 of the publication.
DOI: 10.6084/m9.figshare.c.3627770_d5.v1
title: Additional file 10: Table S9. of Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

description: Number of mapped reads and RPKM values sense and antisense for all genes of the B. cenocepacia J2315 genome. (XLSX 2108Â kb)
DOI: 10.6084/m9.figshare.c.3627779_d3.v1
title: Additional file 5: of Bacterial small RNAs in the Genus Rickettsia

description: List of primers used for amplification of R. prowazekii predicted sRNAs. (XLSX 49 kb)