cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.k956z8
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Monitoreo de la ocupación de la Danta de montaña (Tapirus pinchaque) en el Parque Nacional Natural Las Hermosas Gloria Castaño de Valencia para 2017 y 2018"
 ]
}

 The dataset includes 78 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0325582-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.666wnx
title: Occurrence Download

description: A dataset containing 4407323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Natural History Museum (London) Collection Specimens"
 ]
}

 The dataset includes 4407323 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0260048-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8su6e9
title: Occurrence Download

description: A dataset containing 633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Monopterus albus (Zuiew, 1793)"
 ]
}

 The dataset includes 633 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0311669-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmcgp5
title: Occurrence Download

description: A dataset containing 1337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-99.966 18.95,-99.616 18.95,-99.616 19.216,-99.966 19.216,-99.966 18.95))",
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Reptilia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1337 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079029-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dc9bt7
title: Occurrence Download

description: A dataset containing 1484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Paraguay",
 {
 "or" : [
 "StateProvince is Boquerón",
 "StateProvince is Boquerón / Presidente Hayes",
 "StateProvince is Boquern",
 "StateProvince is Boqueron / Presidente Hayes",
 "StateProvince is Boqueron",
 "StateProvince is Boquerón Dept.",
 "StateProvince is Boqueron Department",
 "StateProvince is Boqueron Dept.",
 "StateProvince is Boqueron dept.",
 "StateProvince is Presidente Hayes",
 "StateProvince is Presidente Hayes Department",
 "StateProvince is Presidente Hayes Dept.",
 "StateProvince is Alto Paraguay",
 "StateProvince is Alto Paraguay (Alto Chaco)",
 "StateProvince is Alto Paraguay / Boquerón",
 "StateProvince is Alto Paraguay Departamento",
 "StateProvince is Alto Paraguay Department",
 "StateProvince is Alto Paraguay Dept.",
 "StateProvince is SANTA CRUZ DEPTO.",
 "StateProvince is Santa Cruz",
 "StateProvince is Tarija",
 "StateProvince is Tarija Dep.",
 "StateProvince is Tarija Departemento",
 "StateProvince is Tarija Department",
 "StateProvince is Tarija department",
 "StateProvince is Chuquisaca",
 "StateProvince is Chuquisaca Departemento",
 "StateProvince is Chuquisaca Department",
 "StateProvince is Chuquisaca Dept.",
 "StateProvince is Chuquisaca Dept",
 "StateProvince is Chuquisaca dept"
 ]
 },
 "TaxonKey is Poaceae"
 ]
}

 The dataset includes 1484 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013172-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzaap4
title: Occurrence Download

description: A dataset containing 206 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Crepidula onyx G.B.Sowerby I, 1824"
 ]
}

 The dataset includes 206 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0317067-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vd4dgk
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Siphoneugena densiflora Kiaersk."
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079030-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5sv7tx
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Argia kokama Calvert, 1909"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015217-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k57ret
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.75049 1.09857,-77.10205 0.61522,-76.44287 -0.04395,-75.12451 -0.83493,-74.24561 -1.93323,-72.8833 -2.72358,-70.86182 -2.85526,-71.521 -4.34641,-69.45557 -4.47786,-69.104 -2.72358,-69.63135 -0.17578,-75.82764 2.19673,-76.75049 1.09857))",
 "HasGeospatialIssue is false",
 "TaxonKey is Lagothrix lagotricha (Humboldt, 1812)"
 ]
}

 The dataset includes 31 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038546-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzqqrb
title: Occurrence Download

description: A dataset containing 1962 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nicrophorus americanus A.G.Olivier, 1790"
 ]
}

 The dataset includes 1962 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039557-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqyu57
title: Occurrence Download

description: A dataset containing 419 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is Mexico",
 "TaxonKey is Ursus americanus Pallas, 1780"
 ]
}

 The dataset includes 419 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016490-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yb379g
title: Occurrence Download

description: A dataset containing 436 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Touit melanonotus (Wied-Neuwied, 1820)"
 ]
}

 The dataset includes 436 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284233-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5hazr4
title: Occurrence Download

description: A dataset containing 702 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Clematis akebioides (Maxim.) H.J.Veitch)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 702 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051889-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.behu3s
title: Occurrence Download

description: A dataset listing the 3299794 species recorded in GBIF matching the query:
{ }

 The dataset's 3299794 records were derived from 31764 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081738-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.9640985
title: Additional file 1: of miR-504 suppresses mesenchymal phenotype of glioblastoma by directly targeting the FZD7-mediated Wnt–β-catenin pathway

description: Table S1. The annotated gene sets involved in this study. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.19588986.v1
title: Additional file 8 of Plastome structure, phylogenomics and evolution of plastid genes in Swertia (Gentianaceae) in the Qing-Tibetan Plateau

description: Additional file 8: Table S8. Pairwise genetic distance of the 20 Swertia plastomes.
DOI: 10.6084/m9.figshare.9640985.v1
title: Additional file 1: of miR-504 suppresses mesenchymal phenotype of glioblastoma by directly targeting the FZD7-mediated Wnt–β-catenin pathway

description: Table S1. The annotated gene sets involved in this study. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.9641003
title: Additional file 4: of miR-504 suppresses mesenchymal phenotype of glioblastoma by directly targeting the FZD7-mediated Wnt–β-catenin pathway

description: Table S3. miR-504–related genes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.9641003.v1
title: Additional file 4: of miR-504 suppresses mesenchymal phenotype of glioblastoma by directly targeting the FZD7-mediated Wnt–β-catenin pathway

description: Table S3. miR-504–related genes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.9641012
title: Additional file 6: of miR-504 suppresses mesenchymal phenotype of glioblastoma by directly targeting the FZD7-mediated Wnt–β-catenin pathway

description: Table S4. List of top 200 significant differentially upregulated genes in miR-504 low-expression tumors. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.9641012.v1
title: Additional file 6: of miR-504 suppresses mesenchymal phenotype of glioblastoma by directly targeting the FZD7-mediated Wnt–β-catenin pathway

description: Table S4. List of top 200 significant differentially upregulated genes in miR-504 low-expression tumors. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.9641021
title: Additional file 9: of miR-504 suppresses mesenchymal phenotype of glioblastoma by directly targeting the FZD7-mediated Wnt–β-catenin pathway

description: Table S5. Candidate genes predicted by TargetScan, miRDB, and PITA. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.9641021.v1
title: Additional file 9: of miR-504 suppresses mesenchymal phenotype of glioblastoma by directly targeting the FZD7-mediated Wnt–β-catenin pathway

description: Table S5. Candidate genes predicted by TargetScan, miRDB, and PITA. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.9641024
title: Additional file 10: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S8. The key genes used as seed nodes to generate core transcriptional regulatory network. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9641024.v1
title: Additional file 10: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S8. The key genes used as seed nodes to generate core transcriptional regulatory network. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9641033
title: Additional file 12: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Dataset 1. The sequences of novel genes identified in this study. (TXT 41244 kb)
DOI: 10.6084/m9.figshare.9641033.v1
title: Additional file 12: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Dataset 1. The sequences of novel genes identified in this study. (TXT 41244 kb)
DOI: 10.6084/m9.figshare.9641045
title: Additional file 13: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Dataset 2. List of nodes included in different modules with stringent edge weight thresholds used for construction of gene regulatory networks. (XLSX 2433 kb)
DOI: 10.6084/m9.figshare.9641045.v1
title: Additional file 13: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Dataset 2. List of nodes included in different modules with stringent edge weight thresholds used for construction of gene regulatory networks. (XLSX 2433 kb)
DOI: 10.6084/m9.figshare.14883936
title: Circ_0006988 promotes the proliferation, metastasis and angiogenesis of non-small cell lung cancer cells by modulating miR-491-5p/MAP3K3 axis

description: Circular RNAs (circRNAs) are related to the progression of non-small cell lung cancer (NSCLC). However, the roles and mechanism of circ_0006988 are largely unknown. The levels of circ_0006988, Low-Density Lipoprotein Receptor Class A Domain Containing 3 (LDLRAD3), microRNA-491-5p (miR-491-5p), Mitogen-Activated Protein Kinase Kinase Kinase 3 (MAP3K3) were measured using quantitative real-time polymerase-chain reaction (qRT-PCR) and western blot assay. The characteristic of circ_0006988 was analyzed by RNase R assay and Actinomycin D assay. Functional analyses were processed by Cell Counting Kit-8 (CCK-8) assay, 5-ethynyl-2ʹ-deoxyuridine (EdU) assay, colony formation assay, flow cytometry analysis, transwell assay, wound-healing assay and tube formation assay. The interactions between circ_0006988 and miR-491-5p as well as miR-491-5p and MAP3K3 were analyzed by dual-luciferase reporter assay and RNA immunoprecipitation (RIP) assay. Murine xenograft model assay was processed to verify the function of circ_0006988 <i>in vivo</i>. Immunohistochemistry (IHC) assay was conducted to examine the level of Ki67. Circ_0006988 abundance was increased in NSCLC tissues and cells. Circ_0006988 silencing restrained NSCLC cell proliferation, migration, invasion and angiogenesis, and induced apoptosis. Circ_0006988 sponged miR-491-5p, which directly targeted MAP3K3. MiR-491-5p overexpression repressed NSCLC cell malignant behaviors. MiR-491-5p downregulation or MAP3K3 overexpression reversed the effect of circ_0006988 silencing on NSCLC cell progression. In addition, circ_0006988 knockdown reduced xenograft tumor growth. ssCirc_0006988 contributed to the development of NSCLC by miR-491-5p/MAP3K3 axis.
DOI: 10.6084/m9.figshare.9641072
title: Additional file 5: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S3. GO enrichment analysis of the DEGs at different intervals. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.9641072.v1
title: Additional file 5: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S3. GO enrichment analysis of the DEGs at different intervals. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.9641078
title: Additional file 6: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S4. Transcription factors identified in DEGs at different intervals. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9641078.v1
title: Additional file 6: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S4. Transcription factors identified in DEGs at different intervals. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9641081
title: Additional file 7: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S5. List of Transcription factors in quinoa genome. (XLSX 153 kb)
DOI: 10.6084/m9.figshare.9641081.v1
title: Additional file 7: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S5. List of Transcription factors in quinoa genome. (XLSX 153 kb)
DOI: 10.6084/m9.figshare.9641084
title: Additional file 8: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S6. Genes distributed in different modules. (XLSX 5751 kb)
DOI: 10.6084/m9.figshare.9641084.v1
title: Additional file 8: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S6. Genes distributed in different modules. (XLSX 5751 kb)
DOI: 10.6084/m9.figshare.9641087
title: Additional file 9: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S7. Transcription factors identified in different modules. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.9641087.v1
title: Additional file 9: of Investigation into the underlying regulatory mechanisms shaping inflorescence architecture in Chenopodium quinoa

description: Table S7. Transcription factors identified in different modules. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.13297527
title: Additional file 10 of ZNF703 promotes tumor progression in ovarian cancer by interacting with HE4 and epigenetically regulating PEA15

description: Additional file 10. : Original Figs. 5a-e with each individual.
DOI: 10.6084/m9.figshare.19589013
title: Additional file 2 of Effects of salinity acclimation on histological characteristics and miRNA expression profiles of scales in juvenile rainbow trout (Oncorhynchus mykiss)

description: Additional file 2: Table S2. Detailed information for miRNA identification and prediction.
DOI: 10.6084/m9.figshare.19589019
title: Additional file 3 of Effects of salinity acclimation on histological characteristics and miRNA expression profiles of scales in juvenile rainbow trout (Oncorhynchus mykiss)

description: Additional file 3: Table S3. Detailed information for miRNA family identification.
DOI: 10.6084/m9.figshare.19589025.v1
title: Additional file 5 of Effects of salinity acclimation on histological characteristics and miRNA expression profiles of scales in juvenile rainbow trout (Oncorhynchus mykiss)

description: Additional file 5: Table S5. Detailed information for differentially expressed (DE) miRNA-targeted genes (mRNAs) (|log2FC| &gt; 1 and p &lt; 0.05).
DOI: 10.6084/m9.figshare.19589019.v1
title: Additional file 3 of Effects of salinity acclimation on histological characteristics and miRNA expression profiles of scales in juvenile rainbow trout (Oncorhynchus mykiss)

description: Additional file 3: Table S3. Detailed information for miRNA family identification.
DOI: 10.6084/m9.figshare.14870426
title: Additional file 3 of SINE jumping contributes to large-scale polymorphisms in the pig genomes

description: Additional file 3:
DOI: 10.6084/m9.figshare.14870426.v1
title: Additional file 3 of SINE jumping contributes to large-scale polymorphisms in the pig genomes

description: Additional file 3:
DOI: 10.6084/m9.figshare.19589031
title: Additional file 6 of Effects of salinity acclimation on histological characteristics and miRNA expression profiles of scales in juvenile rainbow trout (Oncorhynchus mykiss)

description: Additional file 6: Table S6. Detailed information for the differentially enriched GO term analysis.
DOI: 10.6084/m9.figshare.9641105
title: Additional file 1: of Optic disc shape in patients with long-lasting unilateral esotropia and exotropia

description: Parameters on exotropic and esotropic eyes in all participants. (XLS 80 kb)
DOI: 10.6084/m9.figshare.19589013.v1
title: Additional file 2 of Effects of salinity acclimation on histological characteristics and miRNA expression profiles of scales in juvenile rainbow trout (Oncorhynchus mykiss)

description: Additional file 2: Table S2. Detailed information for miRNA identification and prediction.
DOI: 10.6084/m9.figshare.9641105.v1
title: Additional file 1: of Optic disc shape in patients with long-lasting unilateral esotropia and exotropia

description: Parameters on exotropic and esotropic eyes in all participants. (XLS 80 kb)
DOI: 10.6084/m9.figshare.19589022
title: Additional file 4 of Effects of salinity acclimation on histological characteristics and miRNA expression profiles of scales in juvenile rainbow trout (Oncorhynchus mykiss)

description: Additional file 4: Table S4. Detailed information for differentially expressed (DE) miRNAs (|log2FC| &gt; 1 and p &lt; 0.05).
DOI: 10.6084/m9.figshare.19589022.v1
title: Additional file 4 of Effects of salinity acclimation on histological characteristics and miRNA expression profiles of scales in juvenile rainbow trout (Oncorhynchus mykiss)

description: Additional file 4: Table S4. Detailed information for differentially expressed (DE) miRNAs (|log2FC| &gt; 1 and p &lt; 0.05).
DOI: 10.6084/m9.figshare.19589031.v1
title: Additional file 6 of Effects of salinity acclimation on histological characteristics and miRNA expression profiles of scales in juvenile rainbow trout (Oncorhynchus mykiss)

description: Additional file 6: Table S6. Detailed information for the differentially enriched GO term analysis.
DOI: 10.6084/m9.figshare.19589025
title: Additional file 5 of Effects of salinity acclimation on histological characteristics and miRNA expression profiles of scales in juvenile rainbow trout (Oncorhynchus mykiss)

description: Additional file 5: Table S5. Detailed information for differentially expressed (DE) miRNA-targeted genes (mRNAs) (|log2FC| &gt; 1 and p &lt; 0.05).
DOI: 10.6084/m9.figshare.21161929
title: Identification of super-enhancer-associated transcription factors regulating glucose metabolism in poorly differentiated thyroid carcinoma

description: Abstract This study aimed to uncover transcription factors that regulate super-enhancers involved in glucose metabolism reprogramming in poorly differentiated thyroid carcinoma (PDTC). TCA cycle and pyruvate metabolism were significantly enriched in PDTC. Differentially expressed genes in PDTC vs. normal control tissues were located in key steps in TCA cycle and pyruvate metabolism. A total of 23 upregulated genes localized in TCA cycle and pyruvate metabolism were identified as super-enhancer-controlled genes. Transcription factor analysis of these 23 super-enhancer-controlled genes related to glucose metabolism was performed, and 20 transcription factors were obtained, of which KLF12, ZNF281 and RELA had a significant prognostic impact. Regulatory network of KLF12, ZNF281 and RELA controlled the expression of these four prognostic target genes (LDHA, ACLY, ME2 and IDH2). In vitro validation showed that silencing of KLF12, ZNF281 and RELA suppressed proliferation, glucose uptake, lactate production and ATP level, but increased ADP/ATP ratio in PDTC cells. In conclusion, KLF12, ZNF281 and RELA were identified as the key transcription factors that regulate super-enhancer-controlled genes related to glucose metabolism in PDTC. Our findings contribute to a deeper understanding of the regulatory mechanisms associated with glucose metabolism in PDTC, and advance the theoretical development of PDTC-targeted therapies.