cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tdndvb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Megaphyllum silvaticum (Verhoeff, 1898)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079594-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.13363717
title: SPMIL_main_code_TCGA
DOI: 10.5281/zenodo.13363718
title: SPMIL_main_code_TCGA
DOI: 10.15468/dl.32qbph
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Megaphyllum syrense (Verhoeff, 1903)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079596-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ydd5wx
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Ecological Guild Evolution and the Discovery of the World’s Smallest Vertebrate",
 "TaxonKey is Paedophryne amauensis Rittmeyer, Allison, Gründler, Thompson & Austin, 2012"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079597-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zq5yvz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Megaphyllum carniolense (Verhoeff, 1897)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079598-240626123714530/datasets/export for details.
DOI: 10.15468/dl.6gszca
title: Occurrence Download

description: A dataset containing 8823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelobates cultripes (Cuvier, 1829)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 8823 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079599-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8use3q
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Megaphyllum bosniense (Verhoeff, 1897)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079600-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwhrnj
title: Occurrence Download

description: A dataset containing 102081 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is India Biodiversity Portal publication grade dataset"
 ]
}

 The dataset includes 102081 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079572-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbnw25
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Megaphyllum austriacum (Latzel, 1884)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079601-240626123714530/datasets/export for details.
DOI: 10.15468/dl.zcbdvp
title: Occurrence Download

description: A dataset containing 439135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oriolus oriolus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 439135 records from 2583 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079589-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.8235551
title: Carbon catabolite control of glycogen degradation activity of <em>Lactobacillus crispatus</em>? Findings from the internship of Deborah Jekel

description: These are the data and thesis belonging to the blog post on REBLAB.org: http://www.reblab.org/ongoing-experiments-log/carbon-catabolite-control-of-glycogen-degradation-activity-of-lactobacillus-crispatus-findings-from-the-internship-of-deborah-jekel/
DOI: 10.6084/m9.figshare.8235551.v1
title: Carbon catabolite control of glycogen degradation activity of <em>Lactobacillus crispatus</em>? Findings from the internship of Deborah Jekel

description: These are the data and thesis belonging to the blog post on REBLAB.org: http://www.reblab.org/ongoing-experiments-log/carbon-catabolite-control-of-glycogen-degradation-activity-of-lactobacillus-crispatus-findings-from-the-internship-of-deborah-jekel/
DOI: 10.6084/m9.figshare.8235524
title: C57BL/6 and 129 inbred mouse strains differ in Gbp2 and Gbp2b expression in response to inflammatory stimuli in vivo

description: Results from qPCR investigating expression of Gbp1-9 after PAMP, Toxoplasma gondii and Shigella flexneri in vivo stimulation.<br>Results of protein expression blots for Gbp2b and Gbp2 after PAMP, Toxoplasma gondii and Shigella flexneri in vivo stimulation.<br>Results from a digital qPCR investigating copy number of Gbp2b in 129 versus C57BL/6J mice.
DOI: 10.6084/m9.figshare.8235491
title: 3D gene expression patterns in Drosophila blastoderm embryos used in “Dissecting the sharp response of a canonical developmental enhancer reveals multiple sources of cooperativity”

description: Developmental enhancers integrate graded concentrations of transcription factors (TFs) to create sharp gene expression boundaries. Here we examine the hunchback P2 (HbP2) enhancer which drives a sharp expression pattern in the Drosophila blastoderm embryo in response to the transcriptional activator Bicoid (Bcd).<br>This dataset contains 3D gene expression patterns in Drosophila blastoderm embryos. The pattern is from reporter constructs where LacZ driven by the Hunchback P2 enhancer or a variant, or where potential regulators of Hunchback P2 have been perturbed by RNAi.<br>
DOI: 10.6084/m9.figshare.8235500
title: Tabla_ANOVA.tif

description: Apéndice A. Tabla ANOVA
DOI: 10.6084/m9.figshare.8235500.v1
title: Tabla_ANOVA.tif

description: Apéndice A. Tabla ANOVA
DOI: 10.6084/m9.figshare.8235524.v1
title: C57BL/6 and 129 inbred mouse strains differ in Gbp2 and Gbp2b expression in response to inflammatory stimuli in vivo

description: Results from qPCR investigating expression of Gbp1-9 after PAMP, Toxoplasma gondii and Shigella flexneri in vivo stimulation.<br>Results of protein expression blots for Gbp2b and Gbp2 after PAMP, Toxoplasma gondii and Shigella flexneri in vivo stimulation.<br>Results from a digital qPCR investigating copy number of Gbp2b in 129 versus C57BL/6J mice.
DOI: 10.6084/m9.figshare.8234345
title: Seismic_Resolution.xlsx

description: Excel spreadsheet to quickly calculate the vertical and horizontal resolution, and the Fresnel Zone of the selection interval of seismic data. <br>Inputs required are time (milliseconds), dominant frequency (Hz), sonic velocity (microseconds/foot) and depth (m). <br>The spreadsheet can be edited and provides the basis for your own calculations.
DOI: 10.6084/m9.figshare.8234288
title: A single pulse of diffuse contaminants alters the size distribution of natural phytoplankton communities (DATA)

description: Data shown in the paper <br>
DOI: 10.6084/m9.figshare.8234288.v1
title: A single pulse of diffuse contaminants alters the size distribution of natural phytoplankton communities (DATA)

description: Data shown in the paper <br>
DOI: 10.6084/m9.figshare.8234252
title: Raw Experimental Data from Nanosecond pulsed electric field induced proliferation and differentiation of osteoblasts and myoblasts

description: Low-intensity electric fields can induce changes in cell differentiation and cytoskeletal stresses that facilitate manipulation of osteoblasts and mesenchymal stem cells; however, the application times (tens of minutes) are on the order of physiological mechanisms, which can complicate treatment consistency. Intense nanosecond pulsed electric fields (nsPEFs) can overcome these challenges by inducing similar stresses on shorter timescales while additionally inducing plasma membrane nanoporation, ion transport and intracellular structure manipulation. This paper shows that treating myoblasts and osteoblasts with five 300 ns PEFs with intensities from 1.5 to 25 kV cm<sup>−1</sup> increased proliferation and differentiation. While nsPEFs above 5 kV cm<sup>−1</sup> decreased myoblast population growth, 10 and 20 kV cm<sup>−1</sup> trains increased myoblast population by approximately five-fold 48 h after exposure when all cell densities were set to the same level after exposure. Three trials of the pulsed electric field (PEF)-treated osteoblasts showed that PEF trains between 2.5 and 10 kV cm<sup>−1</sup> induced the greatest population growth compared to the control 48 h after treatment. Trains of nsPEFs between 1.5 and 5 kV cm<sup>−1</sup> induced the most nodule formation in osteoblasts, indicating bone formation. These results demonstrate the potential utility for nsPEFs to rapidly modulate stem cells for proliferation and differentiation and motivate future experiments to optimize PEF parameters for <i>in vivo</i> applications.
DOI: 10.6084/m9.figshare.8234345.v1
title: Seismic_Resolution.xlsx

description: Excel spreadsheet to quickly calculate the vertical and horizontal resolution, and the Fresnel Zone of the selection interval of seismic data. <br>Inputs required are time (milliseconds), dominant frequency (Hz), sonic velocity (microseconds/foot) and depth (m). <br>The spreadsheet can be edited and provides the basis for your own calculations.
DOI: 10.6084/m9.figshare.8234249
title: ARIMA DATA

description: RAW DATA FOR ARIMA AND STI ANALYSES
DOI: 10.6084/m9.figshare.8234192
title: Fig2_pinenechicken.pzfx

description: Effect of a-pinene in broiler water supply on C. jejuni numbers in feces.
DOI: 10.6084/m9.figshare.8234252.v1
title: Raw Experimental Data from Nanosecond pulsed electric field induced proliferation and differentiation of osteoblasts and myoblasts

description: Low-intensity electric fields can induce changes in cell differentiation and cytoskeletal stresses that facilitate manipulation of osteoblasts and mesenchymal stem cells; however, the application times (tens of minutes) are on the order of physiological mechanisms, which can complicate treatment consistency. Intense nanosecond pulsed electric fields (nsPEFs) can overcome these challenges by inducing similar stresses on shorter timescales while additionally inducing plasma membrane nanoporation, ion transport and intracellular structure manipulation. This paper shows that treating myoblasts and osteoblasts with five 300 ns PEFs with intensities from 1.5 to 25 kV cm<sup>−1</sup> increased proliferation and differentiation. While nsPEFs above 5 kV cm<sup>−1</sup> decreased myoblast population growth, 10 and 20 kV cm<sup>−1</sup> trains increased myoblast population by approximately five-fold 48 h after exposure when all cell densities were set to the same level after exposure. Three trials of the pulsed electric field (PEF)-treated osteoblasts showed that PEF trains between 2.5 and 10 kV cm<sup>−1</sup> induced the greatest population growth compared to the control 48 h after treatment. Trains of nsPEFs between 1.5 and 5 kV cm<sup>−1</sup> induced the most nodule formation in osteoblasts, indicating bone formation. These results demonstrate the potential utility for nsPEFs to rapidly modulate stem cells for proliferation and differentiation and motivate future experiments to optimize PEF parameters for <i>in vivo</i> applications.
DOI: 10.6084/m9.figshare.8234189
title: Fig3_pinenececumcontent.pzf

description: Reduction of C. jejuni in broiler cecum content after gavage with a-pinene at sub-inhibitory concentration 250 mg/L.
DOI: 10.6084/m9.figshare.8234192.v1
title: Fig2_pinenechicken.pzfx

description: Effect of a-pinene in broiler water supply on C. jejuni numbers in feces.
DOI: 10.6084/m9.figshare.8234246
title: Nederlof I et al. Comprehensive evaluation of methods to assess overall and cell-specific immune infiltrates in breast cancer.

description: Supplementary data tables from Nederlof I et al. Comprehensive evaluation of methods to assess overall and cell-specific immune infiltrates in breast cancer. <br>- The microscopic, methylomic and transcriptomic based immune infiltration scores and fractions. Reported on H&E (sTIL, itTIL), Tissue Micro Array (TMA; CD3, CD4, CD8, CD20, CD68, FOXP3), digital TMA (CD3, CD4, CD8, CD20, CD68), Whole Slides (WS; CD3, CD4, CD8, CD20, CD68, FOXP3), and digital WS (CD3). <br>- The sort of data available for each patient. Table lists transcriptomic data (RNAseq), methylomic data, Tissue Micro Array (TMA), Whole Slides (WS), Haematoxylin & Eosin slides (H&E), and whole genome sequencing (WGS). <br>- Reports on the statistical differences of the distribution of clinical and pathological characteristics for each data type available versus the samples that do not have this data type available. Data types tested are transcriptomic, methylomic, Tissue Micro Array (TMA) and Whole Slides (WS)
DOI: 10.6084/m9.figshare.8234159
title: TableS1_S2_pinene.xlsx

description: Resistance of C. jejuni; a-pinene antimicrobial action
DOI: 10.6084/m9.figshare.8234156
title: FigS1_S2_vibrioOdRfu_1.pzf

description: Luminescence in V. harveyi BB170 after addition of C. jejuni CFS.
DOI: 10.6084/m9.figshare.8234189.v1
title: Fig3_pinenececumcontent.pzf

description: Reduction of C. jejuni in broiler cecum content after gavage with a-pinene at sub-inhibitory concentration 250 mg/L.
DOI: 10.6084/m9.figshare.8234159.v1
title: TableS1_S2_pinene.xlsx

description: Resistance of C. jejuni; a-pinene antimicrobial action
DOI: 10.6084/m9.figshare.8234153
title: Fig1_QSreduction.opj

description: Quorum sensing reduction in C. jejuni with a-pinene, tested with the bioluminescence assay.
DOI: 10.6084/m9.figshare.8234156.v1
title: FigS1_S2_vibrioOdRfu_1.pzf

description: Luminescence in V. harveyi BB170 after addition of C. jejuni CFS.
DOI: 10.6084/m9.figshare.8234144
title: Mouse TibiaMicroCT data

description: The longitudinal microCT data of mouse tibia from Wild and WildPTH groups.
DOI: 10.6084/m9.figshare.8234246.v1
title: Nederlof I et al. Comprehensive evaluation of methods to assess overall and cell-specific immune infiltrates in breast cancer.

description: Supplementary data tables from Nederlof I et al. Comprehensive evaluation of methods to assess overall and cell-specific immune infiltrates in breast cancer. <br>- The microscopic, methylomic and transcriptomic based immune infiltration scores and fractions. Reported on H&E (sTIL, itTIL), Tissue Micro Array (TMA; CD3, CD4, CD8, CD20, CD68, FOXP3), digital TMA (CD3, CD4, CD8, CD20, CD68), Whole Slides (WS; CD3, CD4, CD8, CD20, CD68, FOXP3), and digital WS (CD3). <br>- The sort of data available for each patient. Table lists transcriptomic data (RNAseq), methylomic data, Tissue Micro Array (TMA), Whole Slides (WS), Haematoxylin & Eosin slides (H&E), and whole genome sequencing (WGS). <br>- Reports on the statistical differences of the distribution of clinical and pathological characteristics for each data type available versus the samples that do not have this data type available. Data types tested are transcriptomic, methylomic, Tissue Micro Array (TMA) and Whole Slides (WS)
DOI: 10.6084/m9.figshare.8234153.v1
title: Fig1_QSreduction.opj

description: Quorum sensing reduction in C. jejuni with a-pinene, tested with the bioluminescence assay.
DOI: 10.6084/m9.figshare.8234099
title: Magma mixing model for the genesis of middle crust in the Izu–Bonin–Mariana arc: evidence from plutonic rocks in the Mineoka-Setogawa ophiolitic mélange, central Japan

description: A Paleogene accretionary complex, the Mineoka–Setogawa belt is distributed adjacent to the northern portion of the collision zone between Honshu and Izu–Bonin–Mariana (IBM) arcs in central Japan, comprising a mélange of ophiolitic fragments of various sizes. The Eocene-Oligocene plutonic rocks in this belt (gabbro, diorite, and tonalite) have been interpreted as fragments brought from the deep crust beneath the IBM arc through tectonic collisions. The geochemical characteristics of the gabbro and associated basaltic dike are similar to those of the Eocene IBM tholeiitic basalt; thus, the gabbro was likely formed via the crystallization of the Eocene tholeiitic basaltic magmas, which was produced by the partial meltings of a depleted mantle wedge. A comparison with experimental results and geochemical modeling indicates that the tonalite was generated by 10–30% dehydration melting of the gabbro. Actually, Eocene–Oligocene felsic veins, which are coeval with the plutonic rocks, occur in the Mineoka–Setogawa gabbro. Plagioclase crystals in the diorite comprise Ca-rich and -poor parts in a single crystal. Their compositional characteristics are consistent with those of plagioclase in the gabbro and tonalite, respectively. The textures and chemical composition of plagioclase indicate that the diorite was formed by the mixing between mafic and silicic magmas. The whole-rock composition of the diorite also indicates the evidence for the mixing between basaltic magmas which were fractionated to variable degrees and homogeneous silicic magma. The mixing model proposed from the first direct observations of the IBM middle crust exposed on the Mineoka–Setogawa belt is applied to the genesis of the Eocene to present intermediate rocks in the IBM arc. If the continental crust were created at intra-oceanic arc settings such as the IBM arc, the magma mixing model would be one of the most likely mechanisms for the genesis of the continental crust.
DOI: 10.6084/m9.figshare.8234246.v2
title: Nederlof I et al. Comprehensive evaluation of methods to assess overall and cell-specific immune infiltrates in breast cancer.

description: Supplementary data tables from Nederlof I et al. Comprehensive evaluation of methods to assess overall and cell-specific immune infiltrates in breast cancer. <br>- The microscopic, methylomic and transcriptomic based immune infiltration scores and fractions. Reported on H&E (sTIL, itTIL), Tissue Micro Array (TMA; CD3, CD4, CD8, CD20, CD68, FOXP3), digital TMA (CD3, CD4, CD8, CD20, CD68), Whole Slides (WS; CD3, CD4, CD8, CD20, CD68, FOXP3), and digital WS (CD3). <br>- The sort of data available for each patient. Table lists transcriptomic data (RNAseq), methylomic data, Tissue Micro Array (TMA), Whole Slides (WS), Haematoxylin & Eosin slides (H&E), and whole genome sequencing (WGS). <br>- Reports on the statistical differences of the distribution of clinical and pathological characteristics for each data type available versus the samples that do not have this data type available. Data types tested are transcriptomic, methylomic, Tissue Micro Array (TMA) and Whole Slides (WS)
DOI: 10.6084/m9.figshare.8234099.v1
title: Magma mixing model for the genesis of middle crust in the Izu–Bonin–Mariana arc: evidence from plutonic rocks in the Mineoka-Setogawa ophiolitic mélange, central Japan

description: A Paleogene accretionary complex, the Mineoka–Setogawa belt is distributed adjacent to the northern portion of the collision zone between Honshu and Izu–Bonin–Mariana (IBM) arcs in central Japan, comprising a mélange of ophiolitic fragments of various sizes. The Eocene-Oligocene plutonic rocks in this belt (gabbro, diorite, and tonalite) have been interpreted as fragments brought from the deep crust beneath the IBM arc through tectonic collisions. The geochemical characteristics of the gabbro and associated basaltic dike are similar to those of the Eocene IBM tholeiitic basalt; thus, the gabbro was likely formed via the crystallization of the Eocene tholeiitic basaltic magmas, which was produced by the partial meltings of a depleted mantle wedge. A comparison with experimental results and geochemical modeling indicates that the tonalite was generated by 10–30% dehydration melting of the gabbro. Actually, Eocene–Oligocene felsic veins, which are coeval with the plutonic rocks, occur in the Mineoka–Setogawa gabbro. Plagioclase crystals in the diorite comprise Ca-rich and -poor parts in a single crystal. Their compositional characteristics are consistent with those of plagioclase in the gabbro and tonalite, respectively. The textures and chemical composition of plagioclase indicate that the diorite was formed by the mixing between mafic and silicic magmas. The whole-rock composition of the diorite also indicates the evidence for the mixing between basaltic magmas which were fractionated to variable degrees and homogeneous silicic magma. The mixing model proposed from the first direct observations of the IBM middle crust exposed on the Mineoka–Setogawa belt is applied to the genesis of the Eocene to present intermediate rocks in the IBM arc. If the continental crust were created at intra-oceanic arc settings such as the IBM arc, the magma mixing model would be one of the most likely mechanisms for the genesis of the continental crust.
DOI: 10.6084/m9.figshare.8234069
title: Pancreas training data

description: Training Data for the Pancreas data. Source datasets are from Segerstolpe et al., and Baron et al., see references for details.<br>
DOI: 10.6084/m9.figshare.8234063
title: Arkusz probny.xlsx

description: Trial data sheet<br>
DOI: 10.6084/m9.figshare.8234063.v1
title: Arkusz probny.xlsx

description: Trial data sheet<br>
DOI: 10.6084/m9.figshare.8234039
title: Ascites training data

description: Training dataset for the Ascites data.<br>