cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5013463
title: Data and code for the manuscript Retrieving Water Vapor From an E-band Microwave Link With an Empirical Model Not Requiring In-situ Calibration

description: Data and code for the manuscript <em>Retrieving Water Vapor From an E-band Microwave Link With an Empirical Model Not Requiring In-situ Calibration</em> accepted for publication to<em> </em> <em>Earth and Space Science</em> in October 2021. The dataset contains 7 month of total losses (transmitted - received power levels) and retrieved water vapor density from a 4.87 km long full-duplex E-band commercial microwave link (CML) operating at 73.5 and 83.5 GHz in Prague, CZ. The CML was operated as a part of a mobile phone backhaul. Furthermore, observations of air temperature, and air relative humidity from sites close to the CML end nodes are provided. Finally, theoretical gaseous attenuation calculated from the air temperature and relative humidity is included as a part of the dataset. Data are stored in semicolon-delimited csv files. Time stamps are in UTC time in the format yyyy-mm-dd HH:MM:SS. All time series are regular and have 5-min temporal resolution. Metadata are stored in text files. The code is in a form of R Markdown files and html notebooks. Results presented in the manuscript Retrieving Water Vapor From an E-band Microwave Link With an Empirical Model Not Requiring In-situ Calibration and in its Supporting information are fully reproducible using this dataset.
description: The collection and curation of the dataset was supported by the project of Czech Science Foundation (GACR) No. 20-14151J.
description: {"references": ["M. Fencl, M. Dohnal, and V. Bare\u0161 (in press), Retrieving Water Vapor From an E-band Microwave Link With an Empirical Model Not Requiring In-situ Calibration, Earth and Space Science"]}
DOI: 10.6084/m9.figshare.16856010
title: Supplementary Table 2. from Hidden diversity of double-stranded DNA phages in symbiotic <i>Rhizobium</i> species

description: <i>Rhizobium</i> genomes used in this study. Genomes were downloaded from the GenBank RefSeq viral database. Genome features are shown in distinct columns. All VIBRANT predictions are also shown.
DOI: 10.5281/zenodo.5013462
title: Data and code for the manuscript Retrieving Water Vapor From an E-band Microwave Link With an Empirical Model Not Requiring In-situ Calibration

description: Data and code for the manuscript <em>Retrieving Water Vapor From an E-band Microwave Link With an Empirical Model Not Requiring In-situ Calibration</em> accepted for publication to<em> </em> <em>Earth and Space Science</em> in October 2021. The dataset contains 7 month of total losses (transmitted - received power levels) and retrieved water vapor density from a 4.87 km long full-duplex E-band commercial microwave link (CML) operating at 73.5 and 83.5 GHz in Prague, CZ. The CML was operated as a part of a mobile phone backhaul. Furthermore, observations of air temperature, and air relative humidity from sites close to the CML end nodes are provided. Finally, theoretical gaseous attenuation calculated from the air temperature and relative humidity is included as a part of the dataset. Data are stored in semicolon-delimited csv files. Time stamps are in UTC time in the format yyyy-mm-dd HH:MM:SS. All time series are regular and have 5-min temporal resolution. Metadata are stored in text files. The code is in a form of R Markdown files and html notebooks. Results presented in the manuscript Retrieving Water Vapor From an E-band Microwave Link With an Empirical Model Not Requiring In-situ Calibration and in its Supporting information are fully reproducible using this dataset.
description: The collection and curation of the dataset was supported by the project of Czech Science Foundation (GACR) No. 20-14151J.
description: {"references": ["M. Fencl, M. Dohnal, and V. Bare\u0161 (in press), Retrieving Water Vapor From an E-band Microwave Link With an Empirical Model Not Requiring In-situ Calibration, Earth and Space Science"]}
DOI: 10.6084/m9.figshare.16856019
title: Supplementary Table 4. from Hidden diversity of double-stranded DNA phages in symbiotic <i>Rhizobium</i> species

description: Viral clusters (VCs) of phages and prophages. All the phage and prophage genomes in VCs are described with the average amino acid identity (AAI) values and predicted phage lifestyles.
DOI: 10.6084/m9.figshare.16856022.v1
title: Supplementary Table 7. from Hidden diversity of double-stranded DNA phages in symbiotic <i>Rhizobium</i> species

description: Relationship between VC clusters and phylogenetic clades defined at bootstrap 75%. The second and third columns indicate if the individual genomes of each VC (first column) are within a single clade, or are in separate clades. There are cases where a single clade contains more than one VC. Not included means that prophages of this VC were not in the TerL or MCP phylogeny due to the BlastX cut-off for marker selection.
DOI: 10.6084/m9.figshare.16856022
title: Supplementary Table 7. from Hidden diversity of double-stranded DNA phages in symbiotic <i>Rhizobium</i> species

description: Relationship between VC clusters and phylogenetic clades defined at bootstrap 75%. The second and third columns indicate if the individual genomes of each VC (first column) are within a single clade, or are in separate clades. There are cases where a single clade contains more than one VC. Not included means that prophages of this VC were not in the TerL or MCP phylogeny due to the BlastX cut-off for marker selection.
DOI: 10.6084/m9.figshare.16856025
title: Supplementary Table 3. from Hidden diversity of double-stranded DNA phages in symbiotic <i>Rhizobium</i> species

description: Phage genomes included in the Cytoscape subnetwork shown in Fig. 1. All the genomes that appeared in viral clusters (VCs) and singletons connected with <i>Rhizobium</i> phages in the network are shown. The bacterial hosts and ICTV taxonomy are shown.
DOI: 10.6084/m9.figshare.16856019.v1
title: Supplementary Table 4. from Hidden diversity of double-stranded DNA phages in symbiotic <i>Rhizobium</i> species

description: Viral clusters (VCs) of phages and prophages. All the phage and prophage genomes in VCs are described with the average amino acid identity (AAI) values and predicted phage lifestyles.
DOI: 10.6084/m9.figshare.16856025.v1
title: Supplementary Table 3. from Hidden diversity of double-stranded DNA phages in symbiotic <i>Rhizobium</i> species

description: Phage genomes included in the Cytoscape subnetwork shown in Fig. 1. All the genomes that appeared in viral clusters (VCs) and singletons connected with <i>Rhizobium</i> phages in the network are shown. The bacterial hosts and ICTV taxonomy are shown.
DOI: 10.6084/m9.figshare.16856040
title: Supplementary Table 5. from Hidden diversity of double-stranded DNA phages in symbiotic <i>Rhizobium</i> species

description: Reference list of 155 phage genomes of <i>Rhizobium, Sinorhizobium</i>, and <i>Agrobacterium</i>. The list consists of 130 phage genomes downloaded from the GenBank RefSeq viral database, and 25 sequenced in this study. Additionally, 26 phage genomes from Rhizobiaceae genomes from the RefSeq database integrated into the vConTACT software are listed.
DOI: 10.6084/m9.figshare.16856034.v1
title: Supplementary Table 1. from Hidden diversity of double-stranded DNA phages in symbiotic <i>Rhizobium</i> species

description: Statistical features of 25 phage genome sequences reported in this study. GenBank accession numbers are also shown.
DOI: 10.6084/m9.figshare.16856034
title: Supplementary Table 1. from Hidden diversity of double-stranded DNA phages in symbiotic <i>Rhizobium</i> species

description: Statistical features of 25 phage genome sequences reported in this study. GenBank accession numbers are also shown.
DOI: 10.6084/m9.figshare.16856040.v1
title: Supplementary Table 5. from Hidden diversity of double-stranded DNA phages in symbiotic <i>Rhizobium</i> species

description: Reference list of 155 phage genomes of <i>Rhizobium, Sinorhizobium</i>, and <i>Agrobacterium</i>. The list consists of 130 phage genomes downloaded from the GenBank RefSeq viral database, and 25 sequenced in this study. Additionally, 26 phage genomes from Rhizobiaceae genomes from the RefSeq database integrated into the vConTACT software are listed.
DOI: 10.25721/x2ja-bh33
title: Venez divin Messie
DOI: 10.5281/zenodo.5591881
title: Double-stranded RNA structural elements holding the key to translational regulation in cancer: the case of editing in RNA Binding Motif Protein 8A

description: Raw data supporting the manuscript
DOI: 10.6084/m9.figshare.12356189
title: Supporting Info for "Seismo-turbidites in Aysén Fjord (Southern Chile) Reveal a Complex Pattern of Rupture Modes Along the 1960 Megathrust Earthquake Segment"

description: Supporting Info for "Seismo-turbidites in Aysén Fjord (Southern Chile) Reveal a Complex Pattern of Rupture Modes Along the 1960 Megathrust Earthquake Segment" published in Journal Of Geophysical Research: Solid Earth (https://doi.org/10.1029/2020jb019405).
DOI: 10.6084/m9.figshare.12356189.v1
title: Supporting Info for "Seismo-turbidites in Aysén Fjord (Southern Chile) Reveal a Complex Pattern of Rupture Modes Along the 1960 Megathrust Earthquake Segment"

description: Supporting Info for "Seismo-turbidites in Aysén Fjord (Southern Chile) Reveal a Complex Pattern of Rupture Modes Along the 1960 Megathrust Earthquake Segment" published in Journal Of Geophysical Research: Solid Earth (https://doi.org/10.1029/2020jb019405).
DOI: 10.6084/m9.figshare.13139273
title: Datasets for "The sediments of Lake Singkarak and Lake Maninjau in West Sumatra reveal their earthquake, volcanic and rainfall history"

description: Grain size and PCA datasets used for the results presented in "The sediments of Lake Singkarak and Lake Maninjau in West Sumatra<br>reveal their earthquake, volcanic and rainfall history" published in Sedimentary Geology (https://doi.org/10.1016/j.sedgeo.2021.105863)<br>------<br>Contents:Table S1. Grain-size analysis results for core SN17-09A in Lake Singkarak and MJ17-01B in Lake Maninjau.<br> Table S2. Data table including all variables considered for principal component analysis (PCA) in Lake Singkarak and Lake Maninjau, rescaled to a resolution of 2 mm. XRF element counts are calibrated using centred log-ratios. <br> Table S3. Correlation coefficient (R) matrix of all variables considered for principal component analysis (PCA) in Lake Singkarak and Lake Maninjau. Highly-correlated variables (|R| ≥ 0.9) are not considered for PCA to avoid redundancy in the dataset.<br>
DOI: 10.6084/m9.figshare.13139273.v2
title: Datasets for "Effects of Earthquake Shaking and Volcanic Activity on the Sediments of Lake Singkarak and Lake Maninjau in West Sumatra"

description: Grain size and PCA datasets used for the results presented in "Effects of Earthquake Shaking and Volcanic Activity on the Sediments of Lake Singkarak and Lake Maninjau in West Sumatra" submitted to Sedimentary Geology.<br>------<br>Contents:Table S1. Grain-size analysis results for core SN17-09A in Lake Singkarak and MJ17-01B in Lake Maninjau.<br> Table S2. Data table including all variables considered for principal component analysis (PCA) in Lake Singkarak and Lake Maninjau, rescaled to a resolution of 2 mm. XRF element counts are calibrated using centred log-ratios. <br> Table S3. Correlation coefficient (R) matrix of all variables considered for principal component analysis (PCA) in Lake Singkarak and Lake Maninjau. Highly-correlated variables (|R| ≥ 0.9) are not considered for PCA to avoid redundancy in the dataset.<br>
DOI: 10.25721/z0s3-xw26
title: Bamboula cha cha la
DOI: 10.15151/esrf-es-540930228
title: Italian CryoEM Bag (ICB)

description: This BAG application builds on the development of single particle cryoEM in the Italian Structural Biology community, as in Italy there is no top-end instrument is yet available. The groups in this application have acquired know-how in cryoEM through international collaborations or by acquiring medium-level in-house equipment. Access to the CM01 beamline at the ESRF from August 2020 has allowed the development of projects from groups that do not have in-house equipment that will most likely result in high top level publications in 2021. The three screening microscopes presently installed in Italy boosted sample production in 2020 in spite of the Covid-19 pandemic and the number of samples foreseen for 2021 has greatly increased. The BAG from Italian institutions is nurturing the expansion of the field in Italy and will result in a high-level scientific production.
DOI: 10.5517/ccdc.csd.cc28pysq
title: CCDC 2106474: Experimental Crystal Structure Determination

description: Related Article: Brandon L. Frenette, Alvaro A. Omaña, Michael J. Ferguson, Yuqiao Zhou, Eric Rivard|2021|Chem.Commun.|57|10895|doi:10.1039/D1CC04923B
DOI: 10.5517/ccdc.csd.cc28pz10
title: CCDC 2106482: Experimental Crystal Structure Determination

description: Related Article: Brandon L. Frenette, Alvaro A. Omaña, Michael J. Ferguson, Yuqiao Zhou, Eric Rivard|2021|Chem.Commun.|57|10895|doi:10.1039/D1CC04923B
DOI: 10.5517/ccdc.csd.cc28pytr
title: CCDC 2106475: Experimental Crystal Structure Determination

description: Related Article: Brandon L. Frenette, Alvaro A. Omaña, Michael J. Ferguson, Yuqiao Zhou, Eric Rivard|2021|Chem.Commun.|57|10895|doi:10.1039/D1CC04923B
DOI: 10.5517/ccdc.csd.cc28pyvs
title: CCDC 2106476: Experimental Crystal Structure Determination

description: Related Article: Brandon L. Frenette, Alvaro A. Omaña, Michael J. Ferguson, Yuqiao Zhou, Eric Rivard|2021|Chem.Commun.|57|10895|doi:10.1039/D1CC04923B
DOI: 10.5517/ccdc.csd.cc28pywt
title: CCDC 2106477: Experimental Crystal Structure Determination

description: Related Article: Brandon L. Frenette, Alvaro A. Omaña, Michael J. Ferguson, Yuqiao Zhou, Eric Rivard|2021|Chem.Commun.|57|10895|doi:10.1039/D1CC04923B
DOI: 10.5517/ccdc.csd.cc28pyxv
title: CCDC 2106478: Experimental Crystal Structure Determination

description: Related Article: Brandon L. Frenette, Alvaro A. Omaña, Michael J. Ferguson, Yuqiao Zhou, Eric Rivard|2021|Chem.Commun.|57|10895|doi:10.1039/D1CC04923B
DOI: 10.5517/ccdc.csd.cc28pyyw
title: CCDC 2106479: Experimental Crystal Structure Determination

description: Related Article: Brandon L. Frenette, Alvaro A. Omaña, Michael J. Ferguson, Yuqiao Zhou, Eric Rivard|2021|Chem.Commun.|57|10895|doi:10.1039/D1CC04923B
DOI: 10.5517/ccdc.csd.cc28pyzx
title: CCDC 2106480: Experimental Crystal Structure Determination

description: Related Article: Brandon L. Frenette, Alvaro A. Omaña, Michael J. Ferguson, Yuqiao Zhou, Eric Rivard|2021|Chem.Commun.|57|10895|doi:10.1039/D1CC04923B
DOI: 10.5517/ccdc.csd.cc28pz0z
title: CCDC 2106481: Experimental Crystal Structure Determination

description: Related Article: Brandon L. Frenette, Alvaro A. Omaña, Michael J. Ferguson, Yuqiao Zhou, Eric Rivard|2021|Chem.Commun.|57|10895|doi:10.1039/D1CC04923B
DOI: 10.6084/m9.figshare.16726015
title: Provincial SRIO tables in 2015

description: Provincial SRIO tables in 2015 includes 30 non-competitive IO tables in 30 provinces of China.
DOI: 10.6084/m9.figshare.16726015.v3
title: Provincial SRIO tables in 2015

description: Provincial SRIO tables in 2015 includes 30 non-competitive IO tables in 30 provinces of China.
DOI: 10.5517/ccdc.csd.cc287l9f
title: CCDC 2092664: Experimental Crystal Structure Determination

description: Related Article: Martin-Louis Y. Riu, Mengshan Ye, Christopher C. Cummins|2021|J.Am.Chem.Soc.|143|16354|doi:10.1021/jacs.1c07959
DOI: 10.6084/m9.figshare.16726015.v2
title: Provincial SRIO tables in 2015

description: Provincial SRIO tables in 2015 includes 30 non-competitive IO tables in 30 provinces of China.
DOI: 10.5517/ccdc.csd.cc28gync
title: CCDC 2099743: Experimental Crystal Structure Determination

description: Related Article: Eliezer Ortiz, Jonathan Z. Shezaf, Yu-Hsiang Chang, Théo P. Gonçalves, Kuo-Wei Huang, Michael J. Krische|2021|J.Am.Chem.Soc.|143|16709|doi:10.1021/jacs.1c07857
DOI: 10.5517/ccdc.csd.cc28gypd
title: CCDC 2099744: Experimental Crystal Structure Determination

description: Related Article: Eliezer Ortiz, Jonathan Z. Shezaf, Yu-Hsiang Chang, Théo P. Gonçalves, Kuo-Wei Huang, Michael J. Krische|2021|J.Am.Chem.Soc.|143|16709|doi:10.1021/jacs.1c07857
DOI: 10.5517/ccdc.csd.cc28gyqf
title: CCDC 2099745: Experimental Crystal Structure Determination

description: Related Article: Eliezer Ortiz, Jonathan Z. Shezaf, Yu-Hsiang Chang, Théo P. Gonçalves, Kuo-Wei Huang, Michael J. Krische|2021|J.Am.Chem.Soc.|143|16709|doi:10.1021/jacs.1c07857
DOI: 10.5517/ccdc.csd.cc28gyrg
title: CCDC 2099746: Experimental Crystal Structure Determination

description: Related Article: Eliezer Ortiz, Jonathan Z. Shezaf, Yu-Hsiang Chang, Théo P. Gonçalves, Kuo-Wei Huang, Michael J. Krische|2021|J.Am.Chem.Soc.|143|16709|doi:10.1021/jacs.1c07857
DOI: 10.5517/ccdc.csd.cc28vxcf
title: CCDC 2111235: Experimental Crystal Structure Determination

description: Related Article: K.A. Martyanov, V.A. Kuropatov, E.V. Baranov, M.V. Arsenyev, A.S. Bogomyakov, V.K. Cherkasov|2021|Polyhedron|210|115512|doi:10.1016/j.poly.2021.115512
DOI: 10.5517/ccdc.csd.cc26mwd4
title: CCDC 2044896: Experimental Crystal Structure Determination

description: Related Article: K.A. Martyanov, V.A. Kuropatov, E.V. Baranov, M.V. Arsenyev, A.S. Bogomyakov, V.K. Cherkasov|2021|Polyhedron|210|115512|doi:10.1016/j.poly.2021.115512
DOI: 10.5517/ccdc.csd.cc24txd9
title: CCDC 1991111: Experimental Crystal Structure Determination

description: Related Article: Dae Young Bae, Gunhee Lee, Eunsung Lee|2021|Dalton Trans.|50|14139|doi:10.1039/D1DT02375F
DOI: 10.25721/xanv-my80
title: Minuit Chrétien
DOI: 10.25721/p7cg-gq47
title: Crèche : veillée de noël chez Madame Firmaine Albert. Air instrumental
DOI: 10.5519/qd.em887wvj
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (307 records)
DOI: 10.25721/9bbd-9z07
title: Crèche : veillée de noël chez Madame Firmaine Albert. Air instrumental
DOI: 10.25721/mdg3-zk45
title: Les petits cochons
DOI: 10.6084/m9.figshare.16856113
title: myHub_test

description: Test UCSC Genome Browser Track Hub
DOI: 10.6084/m9.figshare.16856113.v1
title: myHub_test

description: Test UCSC Genome Browser Track Hub
DOI: 10.25721/6zfb-ma49
title: Comme un petit oiseau
DOI: 10.6084/m9.figshare.16856150
title: Probing intermolecular interactions and binding stability of antimicrobial peptides with beta-lactamase of <i>Klebsiella aerogenes</i> by comparing FDA approved beta-lactam drugs: a docking and molecular dynamics approach

description: Hospital pathogens, including <i>Klebsiella aerogenes</i> are becoming increasingly common, with the rise of Beta-lactam-resistant strains, especially in isolates recovered from intensive care rooms. Beta-lactamases participate in both the antibacterial activity and the mediation of the antibiotic resistance of Beta-lactams. The rapid spread of broad-spectrum Beta-lactam antibiotic resistance in pathogenic bacteria has recently become a major global health problem. As a result, new drugs that specifically target Beta-lactamases are urgently needed, and this enzyme has been identified to resolve the problem of bacterial resistance. In previous work, we <i>de-novo</i> developed, synthesized, and studied the <i>in-vitro</i> and <i>in-silico</i> behavior of four novel broad spectrum antimicrobial peptides, namely PEP01 to PEP04. All four peptides had significant antibacterial action against <i>K. aerogenes.</i> The literature evidence strongly suggests that Beta-lactamases are extremely important for bacteria, including <i>K. aerogenes,</i> and hence are therapeutically important and possible targets. Therefore, in this study we incorporated molecular modeling, docking, and simulation studies of the above four AMPs against the Beta-lactamase protein of <i>K. aerogenes</i>. The docking findings were also compared to eight FDA approved Beta-lactam antibiotics. According to our findings, all four peptides have strong binding affinity and interactions with Beta-lactamases and PEP02 has the highest docking score. In MD simulations, the protein-peptide complexes were more stable at 50 ns. We found that the new AMP-PEP02 is the most efficient and suitable drug candidate for inactivating Beta-lactamase protein, and that it is an alternative to or complements existing antibiotics for managing Beta-lactamase related resistance mechanisms based on this computational conclusion. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.16856150.v1
title: Probing intermolecular interactions and binding stability of antimicrobial peptides with beta-lactamase of <i>Klebsiella aerogenes</i> by comparing FDA approved beta-lactam drugs: a docking and molecular dynamics approach

description: Hospital pathogens, including <i>Klebsiella aerogenes</i> are becoming increasingly common, with the rise of Beta-lactam-resistant strains, especially in isolates recovered from intensive care rooms. Beta-lactamases participate in both the antibacterial activity and the mediation of the antibiotic resistance of Beta-lactams. The rapid spread of broad-spectrum Beta-lactam antibiotic resistance in pathogenic bacteria has recently become a major global health problem. As a result, new drugs that specifically target Beta-lactamases are urgently needed, and this enzyme has been identified to resolve the problem of bacterial resistance. In previous work, we <i>de-novo</i> developed, synthesized, and studied the <i>in-vitro</i> and <i>in-silico</i> behavior of four novel broad spectrum antimicrobial peptides, namely PEP01 to PEP04. All four peptides had significant antibacterial action against <i>K. aerogenes.</i> The literature evidence strongly suggests that Beta-lactamases are extremely important for bacteria, including <i>K. aerogenes,</i> and hence are therapeutically important and possible targets. Therefore, in this study we incorporated molecular modeling, docking, and simulation studies of the above four AMPs against the Beta-lactamase protein of <i>K. aerogenes</i>. The docking findings were also compared to eight FDA approved Beta-lactam antibiotics. According to our findings, all four peptides have strong binding affinity and interactions with Beta-lactamases and PEP02 has the highest docking score. In MD simulations, the protein-peptide complexes were more stable at 50 ns. We found that the new AMP-PEP02 is the most efficient and suitable drug candidate for inactivating Beta-lactamase protein, and that it is an alternative to or complements existing antibiotics for managing Beta-lactamase related resistance mechanisms based on this computational conclusion. Communicated by Ramaswamy H. Sarma