cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8301083.v1
title: Sedimentary provenance of the Late Paleozoic metamorphic basement, south-central Chile: Implications for the evolution of the western margin of Gondwana

description: U-Pb detrital zircon age patterns are presented for nine samples of metapelites from the metamorphic basement of south-central Chile between 37° and 40°S, along with detrital zircon ages for a sample from the Piedra Santa metamorphic complex and a crystallization age of the Chachil plutonic complex, farther east in Argentina. Two distinct zircon age patterns are identified. One is a pattern with a dominant population of zircons at ca. 470 Ma (Ordovician), a widespread presence of Mesoproterozoic ages (1200 − 1000 Ma), and a Carboniferous maximum deposition age indicated by the youngest zircon population. The second pattern is drastically different, with a main population of Permian zircons, a 290–250 Ma maximum deposition age, and a minor contribution of Pennsylvanian age zircons. Our results, coupled with previously reported metamorphic ages, show that the patterns reflect the presence of different tectonic blocks separated by the Mocha-Villarrica Fault Zone at 39°S. Metapelites north of this structure have the Ordovician-dominated pattern characteristic of the Western Series of the Paleozoic basement, and those south of the fault show the Permian-dominated pattern observed in the younger high-pressure metapelites from the Bahía Mansa metamorphic complex. The Piedra Santa metamorphic complex also shows the Ordovician-dominated pattern and was intruded by the Chachil plutonic complex dated here at ca. 303 Ma. Therefore, the Piedra Santa complex is interpreted as coeval with the Chilean metamorphic basement. The present dislocation of blocks with different ages is attributed to continental-scale dextral strike-slip tectonics along the Huincul Fault Zone, Argentina, which extends to the west as the Mocha-Villarrica Fault Zone in Chile.
DOI: 10.6084/m9.figshare.8300969
title: metadata for Beaulieu et al. 2019

description: Metadata for Beaulieu et al. 2019 dataset.
DOI: 10.6084/m9.figshare.8300969.v1
title: metadata for Beaulieu et al. 2019

description: Metadata for Beaulieu et al. 2019 dataset.
DOI: 10.6084/m9.figshare.8300606
title: Foreword

description: Foreword
DOI: 10.6084/m9.figshare.8300606.v1
title: Foreword

description: Foreword
DOI: 10.6084/m9.figshare.8300531
title: data for Beaulieu et al. 2019

description: Diifusive, ebullitive, and total carbon dioxide, and methane emission rates measured during a survey of 32 reservoirs in Ohio, Kentucky, and Indiana in 2016. Environmental variables also included. See Beaulieu et al. 2019 for full details.<br>Beaulieu, J. J., S. Waldo, A. D. Balz, W. Barnett, A. Hall, M. C. Platz, and K. M. White. 2020. Methane and carbon dioxide emissions from reservoirs: controls and upscaling. Journal of Geophysical Research-Biogeosciences.<br>
DOI: 10.6084/m9.figshare.8300297
title: Centifanti TF target-child dataset for limited prosocial emotions using CAPE

description: These data are for "CAPE for Measuring Callous-Unemotional Traits in Disadvantaged Families" and include only data on the target children for whom the CAPE was completed. Sibling and family level data were removed for privacy. Ethical approval was given by Durham University and the study was completed between 2013 and 2014.
DOI: 10.6084/m9.figshare.8300297.v1
title: Centifanti TF target-child dataset for limited prosocial emotions using CAPE

description: These data are for "CAPE for Measuring Callous-Unemotional Traits in Disadvantaged Families" and include only data on the target children for whom the CAPE was completed. Sibling and family level data were removed for privacy. Ethical approval was given by Durham University and the study was completed between 2013 and 2014.
DOI: 10.25390/caryinstitute.8300285
title: Long-term data on Hudson River Dreissena (zebra mussel and quagga mussel) populations

description: These are the data files associated with Strayer, D.L., Fischer, D.T., Hamilton, S.K., Malcom, H.M., Pace, M.L., and Solomon, C.T. 2019. Long-term variability and density dependence in Hudson River Dreissena populations. Freshwater Biology, and describe the long-term dynamics of populations of zebra mussels and quagga mussels in the Hudson River. Data include population density, body mass, biomass, body condition, shell length, growth, and size structure.<br>
DOI: 10.6084/m9.figshare.8300282
title: Systematic review of <i>Atractus schach</i> (Serpentes: Dipsadidae) species complex from the Guiana Shield with description of three new species

description: The Guiana Shield harbours one of the best preserved and largest extents of tropical forest on Earth and an immense biodiversity. The herpetofauna of this region remains poorly known. The species-rich snake genus <i>Atractus</i> contains ∼140 species, many with complicated taxonomic histories, including <i>A. schach</i>. Examination of specimens in museums and newly collected material from French Guiana has allowed the illustration of hemipenial morphology for the first time and an expanded diagnosis. Concatenated molecular phylogenetic (mitochondrial and nuclear genes) and phenotypic (morphometrics, external and hemipenial morphology) analyses confirm non-monophyly of the <i>A. flammigerus</i> group and indicate that <i>A. schach</i> is a species complex with three new species described here. The geographic distribution of <i>A. schach sensu stricto</i> is restricted to Guiana, Surinam, and French Guiana north of Tumucumaque massif. Populations tentatively assigned to <i>A. schach</i> from the east from French Guiana in the Roura lowlands to Almeirim, and from central Amazonia between the Negro and Trombetas rivers in Brazil are also recognized as new species. Our results suggest that populations from south of the Amazon River are not conspecific with those from the Guiana Shield. http://www.zoobank.org/urn:lsid:zoobank.org:pub:A7AE40BC-4716-4302-B3BE-1F43600B0A72
DOI: 10.6084/m9.figshare.8300282.v1
title: Systematic review of <i>Atractus schach</i> (Serpentes: Dipsadidae) species complex from the Guiana Shield with description of three new species

description: The Guiana Shield harbours one of the best preserved and largest extents of tropical forest on Earth and an immense biodiversity. The herpetofauna of this region remains poorly known. The species-rich snake genus <i>Atractus</i> contains ∼140 species, many with complicated taxonomic histories, including <i>A. schach</i>. Examination of specimens in museums and newly collected material from French Guiana has allowed the illustration of hemipenial morphology for the first time and an expanded diagnosis. Concatenated molecular phylogenetic (mitochondrial and nuclear genes) and phenotypic (morphometrics, external and hemipenial morphology) analyses confirm non-monophyly of the <i>A. flammigerus</i> group and indicate that <i>A. schach</i> is a species complex with three new species described here. The geographic distribution of <i>A. schach sensu stricto</i> is restricted to Guiana, Surinam, and French Guiana north of Tumucumaque massif. Populations tentatively assigned to <i>A. schach</i> from the east from French Guiana in the Roura lowlands to Almeirim, and from central Amazonia between the Negro and Trombetas rivers in Brazil are also recognized as new species. Our results suggest that populations from south of the Amazon River are not conspecific with those from the Guiana Shield. http://www.zoobank.org/urn:lsid:zoobank.org:pub:A7AE40BC-4716-4302-B3BE-1F43600B0A72
DOI: 10.25390/caryinstitute.8300285.v1
title: Long-term data on Hudson River Dreissena (zebra mussel and quagga mussel) populations

description: These are the data files associated with Strayer, D.L., Fischer, D.T., Hamilton, S.K., Malcom, H.M., Pace, M.L., and Solomon, C.T. 2019. Long-term variability and density dependence in Hudson River Dreissena populations. Freshwater Biology, and describe the long-term dynamics of populations of zebra mussels and quagga mussels in the Hudson River. Data include population density, body mass, biomass, body condition, shell length, growth, and size structure.<br>
DOI: 10.6084/m9.figshare.8300018
title: The UCD nanosafety workshop (03 December 2018): towards developing a consensus on safe handling of nanomaterials within the Irish university labs and beyond – a report

description: Careful handling of the nanomaterials (NMs) in research labs is crucial to ensure a safe working environment. As the largest university in Ireland, University College Dublin (UCD) has invested significant resources to update researchers working with NMs. Due to sizes often &lt;100 nm, the NMs including nanoparticles, harbor unprecedented materialistic properties, for example, enhanced reactivity, conductivity, fluorescence, etc. which albeit conferring the NMs an edge over bulk materials regarding the applied aspects; depending on the dose, also render them to be toxic. Thus, a set of regulatory guidelines have emerged regarding safe handling of the NMs within occupational set-ups. Unfortunately, the current regulations based on the toxic chemicals and carcinogens are often confusing, lack clarity, and difficult to apply for the NMs. As a research-intensive university, a diverse range of research activities occur within the UCD labs, and it is difficult, at times impossible, for the UCD Safety, Insurance, Operational Risk & Compliance (SIRC) office to develop a set of common guidelines and cater throughout all its labs conducting research with the NMs. Hence, a necessity for dialog and exchange of ideas was felt across the UCD which encouraged the researchers including early stage researchers (e.g. PhDs, Postdocs) from multiple schools to participate in a workshop held on the 03 December 2018. The workshop tried to follow a pragmatic approach, where apart from discussing both the <i>in vitro</i> and <i>in vivo</i> scenarios, practical cases simulating situations faced frequently in the labs were discussed. This report summarizes the findings made during the workshop by this emerging critical mass in UCD.
DOI: 10.6084/m9.figshare.8300021
title: Heart rate data (Oximeter PPG vs Kalman PPGI) for eighteen patient used for statistical analysis

description: In the first attached data, 'Subject' is the person identificator, 'Measurement_Number' is the sample number of total measurement, 'Measurement_Number_Subject' is the sample number per person, 'HR_Fingertip_Pulse_Oximeter' is the heart rate measured by the fingertip pulse oximeter method, and 'HR_PPGI_Kalman' is the heart rate measured by the PPGI Kalman method. Also, 'Subject' is a number assigned to classify eighteen patients. Each sample is the number of heart rate calculated over a 6 s sliding-windows size.<br>In the second attached data, 'Number' is the sample number of total measurement, 'ICA_CPU_Usage' is the CPU usage measured when PPGI ICA method estimated heart rate, and 'Kalman_CPU_Usage' s the CPU usage measured when PPGI Kalman method estimated heart rate.
DOI: 10.6084/m9.figshare.8300018.v1
title: The UCD nanosafety workshop (03 December 2018): towards developing a consensus on safe handling of nanomaterials within the Irish university labs and beyond – a report

description: Careful handling of the nanomaterials (NMs) in research labs is crucial to ensure a safe working environment. As the largest university in Ireland, University College Dublin (UCD) has invested significant resources to update researchers working with NMs. Due to sizes often &lt;100 nm, the NMs including nanoparticles, harbor unprecedented materialistic properties, for example, enhanced reactivity, conductivity, fluorescence, etc. which albeit conferring the NMs an edge over bulk materials regarding the applied aspects; depending on the dose, also render them to be toxic. Thus, a set of regulatory guidelines have emerged regarding safe handling of the NMs within occupational set-ups. Unfortunately, the current regulations based on the toxic chemicals and carcinogens are often confusing, lack clarity, and difficult to apply for the NMs. As a research-intensive university, a diverse range of research activities occur within the UCD labs, and it is difficult, at times impossible, for the UCD Safety, Insurance, Operational Risk & Compliance (SIRC) office to develop a set of common guidelines and cater throughout all its labs conducting research with the NMs. Hence, a necessity for dialog and exchange of ideas was felt across the UCD which encouraged the researchers including early stage researchers (e.g. PhDs, Postdocs) from multiple schools to participate in a workshop held on the 03 December 2018. The workshop tried to follow a pragmatic approach, where apart from discussing both the <i>in vitro</i> and <i>in vivo</i> scenarios, practical cases simulating situations faced frequently in the labs were discussed. This report summarizes the findings made during the workshop by this emerging critical mass in UCD.
DOI: 10.6084/m9.figshare.8300021.v1
title: Heart rate data (Oximeter PPG vs Kalman PPGI) for eighteen patient used for statistical analysis

description: In the attached data, 'Subject' is the person identificator, 'Measurement_Number' is the sample number of total measurement, 'Measurement_Number_Subject' is the sample number per person, 'HR_Fingertip_Pulse_Oximeter' is the heart rate measured by the fingertip pulse oximeter method, and 'HR_PPGI_Kalman' is the heart rate measured by the PPGI Kalman method. Also, 'Subject' is a number assigned to classify eighteen patients. Each sample is the number of heart rate calculated over a 6 s sliding-windows size.
DOI: 10.6084/m9.figshare.8299700
title: Data_genis_cardona_grading.xlsx

description: Data set for a study exploring bias when grading ocular conditions<br>
DOI: 10.6084/m9.figshare.8299700.v1
title: Data_genis_cardona_grading.xlsx

description: Data set for a study exploring bias when grading ocular conditions<br>
DOI: 10.25392/leicester.data.8299577
title: Delayed rewards facilitate habit formation

description: All data analysed and reported in the paper (excluding outliers and missing data) is available. The paper reports two experiments, and the data for each experiment is presented in a separate spreadsheet. In both spreadsheets, each row represents one subject. The acquisition and re-baseline data (expressed as LP/min) are presented first, followed by extinction tests (also presented as LP/min), consumption during pre-feeding (presented as gr), and reinforced tests (these are presented as a ratio from training)
DOI: 10.25392/leicester.data.8299577.v1
title: Delayed rewards facilitate habit formation

description: All data analysed and reported in the paper (excluding outliers and missing data) is available. The paper reports two experiments, and the data for each experiment is presented in a separate spreadsheet. In both spreadsheets, each row represents one subject. The acquisition and re-baseline data (expressed as LP/min) are presented first, followed by extinction tests (also presented as LP/min), consumption during pre-feeding (presented as gr), and reinforced tests (these are presented as a ratio from training)
DOI: 10.6084/m9.figshare.8299529
title: Dudin et al. 2019

description: These resulting predicted transcriptome and proteome were used by combining the original annotation and improved by using de novo transcriptome assembly. <br>The improvements are i) some previously fragmented gene models were merged together, ii) 5' and 3' UTR are there, and iii) lincRNA transcripts were identified.
DOI: 10.6084/m9.figshare.8299493
title: Lettuce trial (phenotypic and marker data)

description: This dataset was taken from Hadasch et al. (2016) [see references]. It comprises phenotypic and genetic marker data of 89 lettuce varieties. Note that labels such as variety names were simplified and thus display a de-identified format.<br>It comprises plot data of 89 lettuce varieties tested at three environments, each laid out as a randomized complete block design (RCBD). The measured trait was resistance to downy mildew scored on a scale ranging from 0 to 5.<br>The varieties were genotyped with a total of 300 markers (i.e. 95 single nucleotide polymorphisms and 205 amplified fragment length polymorphism markers, see Hayes et al. (2014) for details [see references]) so that a marker matrix M_(89×300) was provided. The biallelic marker M_iw for the ith genotype and the wth marker with alleles A_1 (i.e. the reference allele) and A_2 was coded as 1 for A_1 A_1, -1 for A_2 A_2 and 0 for A_1 A_2, A_2 A_1.
DOI: 10.6084/m9.figshare.8299463
title: Supplementary Material for: Fluoride Varnish and Dental Caries in Preschoolers: A Systematic Review and Meta-Analysis

description: The aim of this study was to assess the effectiveness of fluoride varnish (FV) in reducing dentine caries at the patient, tooth, and surface levels as well as caries-related hospitalizations in preschoolers. We performed a systematic review of clinical trials of FV, alone or associated with an oral health program, compared with placebo, usual care, or no intervention. Bibliographical search included electronic searches of seven databases, registers of ongoing trials, and meeting abstracts, as well as hand searching. We performed random-effects meta-analyses and calculated confidence and prediction intervals. The search yielded 2,441 records; 20 trials were included in the review and 17 in at least one meta-analysis. Only one study had low risk of bias in all domains. We found no study reporting on caries-related hospitalizations. At the individual level, the pooled relative risk was 0.88 (95% confidence interval [CI] 0.81, 0.95); this means that in a population of preschool children with 50% caries incidence, we need to apply fluoride varnish in 17 children to avoid new caries in one child. At the tooth level, the pooled weighted mean difference was –0.30 (95% CI –0.69, 0.09) and at the surface level –0.77 (95% CI –1.23, –0.31). Considering the prediction intervals, none of the pooled estimates were statistically significant. We conclude that FV showed a modest and uncertain anticaries effect in preschoolers. Cost-effectiveness analyses are needed to assess whether FV should be adopted or abandoned by dental services.
DOI: 10.6084/m9.figshare.8299463.v1
title: Supplementary Material for: Fluoride Varnish and Dental Caries in Preschoolers: A Systematic Review and Meta-Analysis

description: The aim of this study was to assess the effectiveness of fluoride varnish (FV) in reducing dentine caries at the patient, tooth, and surface levels as well as caries-related hospitalizations in preschoolers. We performed a systematic review of clinical trials of FV, alone or associated with an oral health program, compared with placebo, usual care, or no intervention. Bibliographical search included electronic searches of seven databases, registers of ongoing trials, and meeting abstracts, as well as hand searching. We performed random-effects meta-analyses and calculated confidence and prediction intervals. The search yielded 2,441 records; 20 trials were included in the review and 17 in at least one meta-analysis. Only one study had low risk of bias in all domains. We found no study reporting on caries-related hospitalizations. At the individual level, the pooled relative risk was 0.88 (95% confidence interval [CI] 0.81, 0.95); this means that in a population of preschool children with 50% caries incidence, we need to apply fluoride varnish in 17 children to avoid new caries in one child. At the tooth level, the pooled weighted mean difference was –0.30 (95% CI –0.69, 0.09) and at the surface level –0.77 (95% CI –1.23, –0.31). Considering the prediction intervals, none of the pooled estimates were statistically significant. We conclude that FV showed a modest and uncertain anticaries effect in preschoolers. Cost-effectiveness analyses are needed to assess whether FV should be adopted or abandoned by dental services.
DOI: 10.6084/m9.figshare.8299430
title: Trinity-assembled transcript contigs

description: DT transcript contigs assembled using Trinity assembler v2.8.4 with default settings (+ adapter trimming)
DOI: 10.6084/m9.figshare.8299427
title: Kmergenie report

description: Kmergenie kmer abundance histograms and genome size estimation report
DOI: 10.6084/m9.figshare.8299421
title: Spearman coefficients, low-level skill analysis

description: The data set represents the Spearman coefficients we obtained for correlation analysis of skills of a dataset n=400.The skills are seen at low-level (we take into analysis the details in each category of skills).
DOI: 10.6084/m9.figshare.8299430.v1
title: Trinity-assembled transcript contigs

description: DT transcript contigs assembled using Trinity assembler v2.8.4 with default settings (+ adapter trimming)
DOI: 10.6084/m9.figshare.8299409
title: Spearman coefficients, high-level skill analysis

description: The data set represents the Spearman coefficients we obtained for correlation analysis of skills of a dataset n=400.The skills are seen at high-level (we take into analysis categories of skills).
DOI: 10.6084/m9.figshare.8299427.v1
title: Kmergenie report

description: Kmergenie kmer abundance histograms and genome size estimation report
DOI: 10.6084/m9.figshare.8299400
title: Supplementary Material for: Safety and Dose Study of Targeted Lung Denervation in Moderate/Severe COPD Patients

description: <b><i>Rationale:</i></b> Targeted lung denervation (TLD) is a novel bronchoscopic treatment for the disruption of parasympathetic innervation of the lungs. <b><i>Objectives:</i></b> To assess safety, feasibility, and dosing of TLD in patients with moderate to severe COPD using a novel device design. <b><i>Methods:</i></b> Thirty patients with COPD (forced expiratory volume in 1 s 30–60%) were 1:1 randomized in a double-blinded fashion to receive TLD with either 29 or 32 W. Primary endpoint was the rate of TLD-associated adverse airway effects that required treatment through 3 months. Assessments of lung function, quality of life, dyspnea, and exercise capacity were performed at baseline and 1-year follow-up. An additional 16 patients were enrolled in an open-label confirmation phase study to confirm safety improvements after procedural enhancements following gastrointestinal adverse events during the randomized part of the trial. <b><i>Results:</i></b> Procedural success, defined as device success without an in-hospital serious adverse event, was 96.7% (29/30). The rate of TLD-associated adverse airway effects requiring intervention was 3/15 in the 32 W versus 1/15 in the 29 W group, <i>p</i> = 0.6. Five patients early in the randomized phase experienced serious gastric events. The study was stopped and procedural changes made that reduced both gastrointestinal and airway events in the subsequent phase of the randomized trial and follow-up confirmation study. Improvements in lung function and quality of life were observed compared to baseline values for both doses but were not statistically different. <b><i>Conclusions:</i></b> The results demonstrate acceptable safety and feasibility of TLD in patients with COPD, with improvements in adverse event rates after procedural enhancements.
DOI: 10.6084/m9.figshare.8299409.v2
title: Spearman coefficients, high-level skill analysis

description: The data set represents the Spearman coefficients we obtained for correlation analysis of skills of a dataset n=400.The skills are seen at high-level (we take into analysis categories of skills).