DOI: 10.6084/m9.figshare.8240693
title: Additional file 1: of Genome sequencing provides insights into the evolution and antioxidant activity of Chinese bayberry

description: Table S1. Myrica rubra genome sequencing data. Table S2. Myrica rubra genome assembly. Table S3. Comparison of the Chinese bayberry genome assembly with other plant genomes. Table S4. General statistics of the predicted protein-coding genes. Table S5. Statistics of the gene pairs used for fourfold synonymous third-codon transversions (4DTV) distribution analysis. Table S6. Statistics of orthologous gene numbers in Myrica rubra, Fragaria ananassa, Morus notabilis, Solanum lycopersicum, and Vitis vinifera. Table S7. Statistics of orthologous gene numbers in Myrica rubra, Cicer arietinum, Arabidopsis thaliana, and Oryza sativa. Table S8. Annotation of expanded gene families in Myrica rubra and in Solanum lycopersicum, Prunus mume, Morus notabilis, Citrullus lanatus, and Fragaria Ă ananassa. Table S9. Annotation of contracted gene families in Myrica rubra and in Solanum lycopersicum, Prunus mume, Morus notabilis, Citrullus lanatus, and Fragaria Ă ananassa. Table S10. Total flavonoid content and total antioxidant capacity of Chinese bayberry fruit at specific time points. Table S11. Statistics of the gene copies involved in flavonoid biosynthesis, anthocyanin biosynthesis, monoterpenoid biosynthesis, diterpenoid biosynthesis class metabolism, and sesquiterpenoid/triterpenoid biosynthesis pathways. Table S12. Expression profiles of functional genes involved in the flavonoid biosynthesis pathways of Myrica rubra and correlations with total flavonoid contents and total antioxidant capacities. Table S13. Expression profiles of functional genes involved in the anthocyanin biosynthesis pathways of Myrica rubra and correlations with total flavonoid contents and total antioxidant capacities. Table S14. Expression profiles of functional genes involved in the monoterpenoid biosynthesis pathways in Myrica rubra and correlations with the total antioxidant capacity. Table S15. Expression profiles of functional genes involved in the diterpenoid biosynthesis pathways in Myrica rubra and correlations with the total antioxidant capacity. Table S16. Expression profiles of functional genes involved in sesquiterpenoid/triterpenoid biosynthesis pathway in Myrica rubra and correlations with total antioxidant capacity. Table S17. Statistics of transcriptome sequencing and mapping. Table S18. Summary of protein structure homology modeling in Myrica rubra. Table S19. Assessment of unigene assembly with de novo assembled transcripts. Table S20. Assessment of genome assembly by single base error rate. Table S21. Evaluation of genome assembly completeness by the Core Eukaryotic Genes Mapping Approach. Table S22. Summary of sequence repeats in the Myrica rubra genome. Table S23. Statistics of the functional annotation for genome assembly. Table S24. Statistics of non-coding RNAs and pseudogene annotation. Table S25. KEGG database annotation of Myrica rubra. Table S26. Motif and domain statistics detected for Myrica rubra in several databases. Table S27. Genes under positive selection in Myrica rubra. Table S28. Gene ontology annotation of positively selected genes in Myrica rubra. (XLSX 513 kb)