cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18403781
title: Table 1 in Lebiasina yepezi, a new Lebiasininae (Characiformes: Lebiasinidae) from the Serra Parima-Tapirapecó mountains

description: Table 1. Morphometric and meristic data for Lebiasina yepezi. SD - standard deviation.
Holotype nRangeMean SDStandard length152.922 12.0-152.980.7-Percentage of SLDepth at dorsal-fin origin20.91218.6-23.221.31.4Snout to anal-fin origin73.51273.5-79.376.01.8Snout to pelvic-fin origin50.21249.8-53.951.81.4Snout to dorsal-fin origin53.51253.5-57.054.81.2Dorsal-fin origin to caudal-fin base47.71245.0-48.346.51.1Dorsal-fin length18.51118.2-19.618.90.5Dorsal-fin base9.9129.0-10.99.90.5Adipose-fin to caudal peduncle12.51211.5-13.412.50.7Caudal-peduncle Length14.81214.2-16.315.20.6Caudal-peduncle Depth9.9128.7-10.69.50.7Anal-fin length19.91218.1-21.319.71.0Anal-fin base10.7129.3-12.310.51.1Pelvic- to anal-fin origin24.61222.3-25.924.81.1Pelvic-fin length12.21212.0-15.112.90.9Pectoral to pelvic-fin origin28.51227.9-31.329.51.1Pectoral-fin length15.91215.5-17.716.40.7Snout to pectoral-fin origin21.21221.2-25.923.11.4Bony head length23.61223.4-26.625.21.0Percentage of HLHead width13.01212.7-14.613.40.6Horizontal eye diameter4.5124.5-6.35.40.6Distance snout tip to eye6.7126.7-8.17.60.4Interorbital distance9.1129.1-9.79.30.2Lower jaw length10.31210.1-12.211.20.7Upper jaw length5.1125.1-10.37.02.1
description: Published as part of Netto-Ferreira, André L., Oyakawa, Osvaldo T., Zuanon, Jansen & Nolasco, José C., 2011, Lebiasina yepezi, a new Lebiasininae (Characiformes: Lebiasinidae) from the Serra Parima-Tapirapecó mountains, pp. 770 in Neotropical Ichthyology 9 (4) on page 770, DOI: 10.1590/S1679-62252011000400008, http://zenodo.org/record/5423300
DOI: 10.5061/dryad.mkkwh715j
title: Diversity of mitochondrial DNA in three species of great whales before and after modern whaling

description: The 20th-century commercial whaling industry severely reduced populations
 of great whales throughout the Southern Hemisphere. The effect of this
 exploitation on genetic diversity and population structure remains largely
 undescribed. Here, we compare pre- and post-whaling diversity of
 mitochondrial DNA (mtDNA) control region sequences for three great whales
 in the South Atlantic, the blue, humpback and fin whale. Pre-whaling
 diversity is described from mtDNA extracted from bones collected near
 abandoned whaling stations, primarily from the South Atlantic island of
 South Georgia. These bones are known to represent the first stage of
 20th-century whaling and thus pre-whaling diversity of these populations.
 Post-whaling diversity is described from previously published studies
 reporting large-scale sampling of living whales in the Southern
 Hemisphere. Despite relatively high levels of surviving genetic diversity
 in the post-whaling populations, we found evidence of a probable loss of
 mtDNA lineages in all three species. This is evidenced by the detection of
 a large number of haplotypes found in the pre-whaling samples that are not
 present in the post-whaling samples. A rarefaction analysis further
 supports a loss of haplotypes in the South Atlantic humpback and Antarctic
 blue whale populations. The bones from former whaling stations in the
 South Atlantic represent a remarkable molecular archive for further
 investigation of the decline and ongoing recovery in the great whales of
 the Southern Hemisphere.
DOI: 10.5061/dryad.xsj3tx9mw
title: Threshold-dependent gene regulation and partial assortative mating determine wing dimorphism of an Insect

description: Wing dimorphism is a fantastic life-historical trait of insects which
 indicates the developmental trend of populations, going as migrants or
 staying as residents. The alternative wing morph enhances adaptability of
 insects to changing environments. However, the underlying mechanism for
 maintaining wing dimorphism remains vague. The brown planthoppers
 Nilaparvata lugens, a serious pest of rice, are either short-winged or
 long-winged. The shift between two wing morphs is determined by two
 insulin receptors. So, this pest is a better model organism to explore the
 mechanism of wing dimorphism. Here, the short- and long-winged strains of
 N. lugens were selected. Rates of a selected wing morph were linearly
 increased in populations, and the selection response of the short-winged
 morph was stronger than that of the long-winged. Selection enhanced the
 migratory or resident propensity. Directional selection for the
 long-winged morph resulted in longer and lighter forewings, while
 selection for the short-winged morph generated shorter and thicker wings
 and higher fecundity. Relative expression levels of wing development genes
 InR1, InR2, and Foxo were positively correlated with the short-winged rate
 in the short-winged strain, while they were negatively correlated with the
 long-winged rate in the long-winged strain at specific stages. The change
 rate of expression levels was approximately two times as high as that of
 the wing morph rates in populations, indicating a high threshold-dependent
 gene expressed regulation of wing morph. A partial assortative mating
 behavior occurred between the nearly pure-bred lineages of short- and
 long-winged strains. The short-winged males preferred to mate with
 short-winged females while the long-winged males mated with the short- and
 long-winged females equally. The threshold-dependent mode may be more
 flexible to adjust wing morphs according to environmental conditions and
 the partial assortative mating promotes the genetic exchange between two
 wing morphs which drive the maintenance of wing dimorphism.
DOI: 10.5061/dryad.xsj3tx9mx
title: Population demographic history and evolutionary rescue: Influence of a bottleneck event

description: Rapid environmental change presents a significant challenge to the
 persistence of natural populations. Rapid adaptation that
 increases population growth, enabling populations that declined
 following severe environmental change to grow and
 avoid extinction, is called evolutionary rescue. Numerous studies
 have shown that evolutionary rescue can indeed prevent
 extinction. Here, we extend those results by considering the
 demographic history of populations. To evaluate how
 demographic history influences evolutionary rescue, we created 80
 populations of red flour beetle, Tribolium castaneum, with three
 classes of demographic history: diverse populations that did not
 experience a bottleneck, and populations that experienced
 either an intermediate or a strong bottleneck. We subjected these
 populations to a new and challenging environment for six discrete
 generations and tracked extinction and population size.
 Populations that did not experience a bottleneck in their
 demographic history avoided extinction entirely, while more than
 20% of populations that experienced an intermediate or strong
 bottleneck went extinct. Similarly, among the extant populations
 at the end of the experiment, adaptation increased the growth rate in
 the novel environment the most for populations that had not
 experienced a bottleneck in their history. Taken together, these
 results highlight the importance of considering the demographic
 history of populations to make useful and effective conservation
 decisions and management strategies for populations experiencing
 environmental change that pushes them toward extinction.
DOI: 10.15468/dl.5v5h5f
title: Occurrence Download

description: A dataset containing 363557 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Environmental Monitoring Database (EMD) Species data 1987 to 2015"
 ]
}

 The dataset includes 363557 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003541-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.z612jm6hm
title: Mitigating bycatch in trammel net fisheries using species-specific gear modifications

description: Small-scale fisheries (SSF) use static gears like hanging nets, which are
 thought to interact with marine ecosystems more benignly than towed gears.
 Despite this, trammel nets, one of the most regularly used fishing gears
 in the Mediterranean SSF, generate large amounts of discards, which can
 account for 25% or more of the captured biomass. Discarded organisms may
 include endangered or threatened species such as elasmobranchs, as well as
 non-commercial invertebrates that damage fishing gear or cause
 disentanglement delays. We tested various trammel-net gear modifications,
 including (a) the use of a guarding net attached to the footrope, (b)
 increasing the size of the rigging twine between the footrope and the
 netting panel, and (c) decreasing the mesh size of the outer panels. The
 last two modifications were successful in lowering captures of the marbled
 electric ray Torpedo marmorata, which is commonly discarded in the study
 area. Both sorts of modifications are relatively simple and inexpensive to
 implement. The current study shows that prior evaluation of the discards
 profile of distinct métiers is essential to accomplish species-specific
 gear modifications and underlines the importance of collaboration among
 scientists, fishers and gear manufacturers.
DOI: 10.15468/dl.7q5ezu
title: Occurrence Download

description: A dataset containing 872664 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythrina flabelliformis, Euonymus japonicus, Euphorbia chamaesyce, Euphorbia humifusa, Euphorbia lagascae, Euphorbia lathyris, Forsythia intermedia, Gasteria obliqua, Geranium pusillum, Gypsophila elegans, Gypsophila pilosa, Hoya carnosa, Ludwigia peploides, Lysimachia japonica, Mesembryanthemum cordifolium, Oxalis dillenii, Paspalum thunbergii, Prosopis farcta, Scopolia carniolica, Maclura pomifera, Laguncularia racemosa, Rhizophora mucronata, Zeuxine strateumatica, Cyperus tenuispica, Rubus sanctus, Symphyotrichum graminifolium, Artemisia arborescens, Bidens aurea, Blainvillea gayana, Brachychiton diversifolius, Calpurnia aurea, Catha edulis, Cenchrus caudatus, Conocarpus lancifolius, Dianthus caryophyllus, Eucalyptus marginata, Eucalyptus occidentalis, Eucalyptus torquata, Hyphaene thebaica, Iris florentina, Juglans regia, Lathyrus sativus, Malus sylvestris, Morus nigra, Myrtus communis, Nasturtium microphyllum, Nigella sativa, Origanum majorana, Pluchea indica)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 872664 records from 3620 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002969-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.8gtht76vc
title: Data for: Sampling affects population genetic inference: a case study of the Allen's (Selasphorus sasin) and rufous hummingbird (Selasphorus rufus) (Part 1/2)

description: Gene flow can affect evolutionary inference when species are undersampled.
 Here, we evaluate the effects of gene flow and geographic sampling on
 demographic inference of two hummingbirds that hybridize, Allen's
 hummingbird (Selasphorus sasin), and the rufous hummingbird (S. rufus).
 Using whole-genome data and extensive geographic sampling, we find
 widespread connectivity, with introgression far beyond the Allen's ×
 rufous hybrid zone, although the Z chromosome resists introgression beyond
 the hybrid zone. We test alternative hypotheses of speciation history of
 Allen's, rufous, and Calliope (S. calliope) hummingbirds and find
 that the rufous hummingbird is the sister taxon to Allen's
 hummingbird, and the Calliope hummingbird is the outgroup. A model
 treating the two subspecies of Allen's hummingbird as a single
 panmictic population fit observed genetic data better than models treating
 the subspecies as distinct populations, in contrast to morphological and
 behavioral differences and analyses of spatial population structure. With
 additional sampling, our study builds upon recent studies that came to
 conflicting conclusions regarding the evolutionary histories of these two
 species. Our results stress the importance of thorough geographic sampling
 when assessing demographic history in the presence of gene flow.
description: Fastq files that were aligned to the Anna's Hummingbird
 reference genome.
description: # Sampling affects population genetic inference: a case study of the
 Allen's (Selasphorus sasin) and rufous hummingbird (Selasphorus
 rufus)
 [https://doi.org/10.5061/dryad.8gtht76vc](https://doi.org/10.5061/dryad.8gtht76vc) ## Description of the data and file structure Fastq files that were aligned to the Anna's Hummingbird reference genome. Names of individuals are named as they are described in the supplemental material tables.
DOI: 10.5061/dryad.2rbnzs7tg
title: Sharks and rays swimming in a large public aquarium

description: Large Public Aquaria are complex ecosystems that require constant
 monitoring to detect and correct anomalies that may affect the habitat and
 their species. Many of those anomalies can be directly or indirectly
 spotted by monitoring the behavior of fish. This can be a quite laborious
 task to be done by biologists alone. Automated fish tracking methods,
 specially of the non-intrusive type, can help biologists in the timely
 detection of such events. These systems require annotated data of fish to
 be trained. We used footage collected from the main aquarium of Oceanário
 de Lisboa to create a novel dataset with fish annotations from the shark
 and ray species. The dataset has the following characteristics: 66 shark
 training tracks with a total of 15812 bounding boxes 88 shark testing
 tracks with a total of 15978 bounding boxes 133 ray training tracks with a
 total of 28168 bounding boxes 192 ray testing tracks with a total of 31529
 bounding boxes The training set corresponds to a calm environment where
 fish swim slowly. On the other hand, the test set is a challenging
 environment where divers enter the tank to feed the fish causing a frenzy.
description: The dataset was collected using a stationary camera positioned
 outside the main tank of Oceanário de Lisboa aiming at the fish.
 Additionally, this data was processed using the CVAT annotation
 tool to create the sharks and rays annotations.
description: # Sharks and rays swimming in a large public aquarium Each set has 2
 folders: gt and img1. The gt folder contains 3 txt files: gt, gt_out and
 labels. The gt and gt_out files contain the bounding box annotations
 sorted in two distinct ways. The former has the annotations sorted by
 frame number, while the latter is sorted by the track ID. Each line of the
 ground truth files represents one bounding box of a fish trajectory. The
 bounding boxes are represented with the following format: frame id, track
 id, x, y, w, h, not ignored, class id, visibility. The folder img1
 contains all the annotated frames. ## Description of the bounding boxes
 variables: frame id points to the frame where the bounding box was
 obtained; track id identifies the track of a fish with which the bonding
 box is associated; x and y are the pixel coordinates of the top left
 corner of the bounding box; w and h are the width and height of the
 bounding box respectively. These variables are measured in terms of pixels
 of the image; not ignored is a flag to define if the bounding box is meant
 to be used in the processing. When the value is 1 the bounding box should
 be considered and when the value is 0 the bounding box should not be
 considered; class id contains the class of the object of the bounding box.
 This id can be crossed with the labels file to obtain the name of the
 object category; visibility identifies if the object is visible on the
 screen in that frame. When the value is 1 the object is visible and when
 the value is 0 the object is not visible.
DOI: 10.5061/dryad.fqz612jz4
title: Wildlife as sentinels of compliance with law: an example with GPS-tagged scavengers and sanitary regulations

description: Monitoring compliance with environmental laws is essential to overcoming
 possible implementation shortfalls jeopardizing their effectiveness.
 Besides improving our ecological understanding of wildlife, remote
 tracking technologies also allow us to take advantage of such ecological
 knowledge to use wildlife as sentinels of compliance with law. We
 illustrate this sentinel potential of wildlife using GPS-tracking of large
 scavengers with complementary functional traits (i.e., 21 griffon vultures
 and 13 wolves) to assess compliance with EU sanitary regulations allowing
 livestock carcass disposal in the field. Wildlife sentinels allowed the
 systematic evaluation of 489 livestock carcasses left in the field, which
 revealed an important mismatch between on-paper and in-reality
 implementation of these regulations. While &lt;45 % of the carcasses
 were placed in authorized areas, compliance with all the criteria required
 by the regulations on livestock carcass disposal (e.g., from carcass
 characteristics such as species, age, or production system to its location
 far away from water, buildings, or roads) ranged from 0 to 4.2%, with no
 major differences between regions with uneven implementation. Major gaps
 in compliance pointed towards insufficient and over-bureaucratized
 designation of Scavenger Feeding Zones (SFZs), where livestock carcass
 disposal is authorized. The indiscriminate nature of distance criteria
 from carcasses to watercourses, buildings, and infrastructure further
 affected compliance. Synthesis and applications: GPS-tagged scavengers
 allow the on-ground monitoring of carcasses, the addressing of potential
 risks for wildlife, livestock, and human health, the quantitative
 assessment of compliance with the law and would improve estimates of
 carcass availability, substantially contributing to more effective
 legislation enforcement. Our results show the huge potential of GPS-tagged
 wildlife as sentinels for monitoring compliance to enhance the
 environmental rule of law.
DOI: 10.5061/dryad.zw3r228db
title: Dominance loss and tenure maintenance in Kalahari meerkats

description: In many social species, both the acquisition of dominance and the duration
 that individuals maintain their status are important determinants of
 breeding tenure and lifetime reproductive success. However, few studies
 have yet examined the extent and causes of variation in dominance tenure
 and the duration of breeding lifespans. Here we investigate the processes
 that terminate dominance tenures and examine how they differ between the
 sexes in wild Kalahari meerkats (Suricata suricatta), a cooperative
 breeder where a dominant breeding pair produces most of the young
 recruited into each group. Mortality and displacement by resident
 subordinate competitors were important forms of dominance loss for both
 sexes. However, dominant males (but rarely females), were also at risk of
 takeovers by extra-group invading males. Dominant males also differed from
 dominant females in that they abandoned their group after the death of
 their breeding partner, when no other breeding opportunities were present;
 whereas dominant females that lost their partner remained and continued to
 breed in the same group. We show that a larger number of processes can
 terminate dominance tenure in males with the result that the average male
 tenure of breeding positions was shorter than that of females, which
 contributes to the reduced variance in the lifetime reproductive success
 in males compared to females. Our analysis suggests that sex differences
 in emigration and immigration may often have downstream consequences for
 sex differences in reproductive variance and for the selection pressures
 operating on females and males.
DOI: 10.5061/dryad.4mw6m90gh
title: Critical thermal maxima of freshwater larvae (Serratella ignita and Baetis Rhodani), Scotland, from 10 populations at different times

description: The dataset includes a collection of Critical Thermal maxima values
 (CTmax) for 676 Serratella ignita and 155 Baetis rhodani specimens,
 sampled in 4 Scottish lakes in 2016 and 2017. The dataset indicates date
 of collection for each specimen, location, and body size. 
description: Larval sampling took place within a circle of 5 m radius from the
 loggers, using a standard kick sampling net through kick netting method.
  Samples were collected on up to three dates at each site. Once collected,
 larvae were placed in tanks filled with river water and immediately
 transported to the laboratory (average trip 2h by car).
 CT<sub>max</sub> values were established in experiments using
 high performance Grant Optima TX150 circulating water baths with
 programmable heating settings. Larvae were always handled using plastic
 spoons, to prevent damage. They were placed in 8 plastic cups (7x15 cm),
 one for each location. Additional plastic cups were used if the number of
 individuals exceeded 30. Cups were filled with respective site water in
 order to preserve thermal conditions and minimise physiological stress.
 The cups were then placed in the water bath. Prior to experiments, all
 individuals were equilibrated at 10°C for 10 minutes. During each thermal
 trial, samples were subjected to a constant water temperature increase of
 0.1°C/minute, which was monitored and controlled by Grant TX150 programmable circulating water bath
 with C2G cooling attachment (Grant Instruments, Shepreth,
 UK). CT<sub>max</sub> values for each individual
 were recorded when no physical response occurred after three consecutive
 prods (Becker & Genoway, 1979); these individuals were then
 removed from cups while the remaining individuals continued to be
 monitored. All the CTmax experiments were performed on the day of sample
 collection.
description: R, Excel, notepad
DOI: 10.25574/04759
title: Chandra X-ray Observatory ObsId 04759

description: DISSECTING THE ENVIRONMENT OF MCG--6-30-15 WITH THE HETGS
DOI: 10.5061/dryad.c59zw3rds
title: OpenApePose: a database of annotated ape photographs for pose estimation

description: Because of their close relationship with humans, non-human apes
 (chimpanzees, bonobos, gorillas, orangutans, and gibbons, including
 siamangs) are of great scientific interest. The goal of understanding
 their complex behavior would be greatly advanced by the ability to perform
 video-based pose tracking. Tracking, however, requires high-quality
 annotated datasets of ape photographs. Here we present OpenApePose, a new
 public dataset of 71,868 photographs, annotated with 16 body landmarks, of
 six ape species in naturalistic contexts. We show that a standard deep net
 (HRNet-W48) trained on ape photos can reliably track out-of-sample ape
 photos better than networks trained on monkeys (specifically, the
 OpenMonkeyPose dataset) and on humans (COCO) can. This trained network can
 track apes almost as well as the other networks can track their respective
 taxa, and models trained without one of the six ape species can track the
 held-out species better than the monkey and human models can. Ultimately,
 the results of our analyses highlight the importance of large specialized
 databases for animal tracking systems and confirm the utility of our new
 ape database.
description: Files are a split 7zip archive.
DOI: 10.25574/04760
title: Chandra X-ray Observatory ObsId 04760

description: DISSECTING THE ENVIRONMENT OF MCG--6-30-15 WITH THE HETGS
DOI: 10.25574/04761
title: Chandra X-ray Observatory ObsId 04761

description: DISSECTING THE ENVIRONMENT OF MCG--6-30-15 WITH THE HETGS