cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp3/tlkko0
title: Mesoscale cortex-wide neural dynamics predict self-initiated actions in mice several seconds prior to movement

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Volition - the sense of control or agency over one’s voluntary actions - is widely recognized as the basis of both human subjective experience and natural behavior in non-human animals. To date, several human studies have found peaks in neural activity preceding voluntary actions, e.g. the readiness potential (RP), and some have shown upcoming actions could be decoded even before awareness. While these findings may pose a challenge to traditional accounts of human volition, some have proposed that random processes underlie and explain pre-movement neural activity. Here we seek to address part of this controversy by evaluating whether pre-movement neural activity in mice contains structure beyond that present in random neural activity. Implementing a self-initiated water-rewarded lever pull paradigm in mice while recording widefield [Ca++] neural activity we find that cortical activity changes in variance seconds prior to movement and that upcoming lever pulls or spontaneous body movements could be predicted between 1 second to more than 10 seconds prior to movement, similar to but even earlier than in human studies. We show that mice, like humans, are biased towards initiation of voluntary actions during specific phases of neural activity oscillations but that the pre-movement neural code in mice changes over time and is widely distributed as behavior prediction improved when using all vs single cortical areas. These findings support the presence of structured multi-second neural dynamics preceding voluntary action beyond that expected from random processes. Our results also suggest that neural mechanisms underlying self-initiated voluntary action could be preserved between mice and humans.&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;See Methods section biorxiv manuscript:&lt;/p&gt;

&lt;p&gt;https://www.biorxiv.org/content/10.1101/2021.12.17.473193v1&lt;/p&gt;
description: <b>Dryad version number:</b> 3
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/pXYrPgCLrZIvhsd3kHdyKAz6lEG_K2zHxF8iZUET888
<b>Storage size:</b> 785692307
<b>Visibility:</b> public
DOI: 10.15468/dl.mfrm53
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Carpomya vesuviana"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046587-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5683/sp3/c9wlyg
title: Active and inactive oil and gas sites contribute to methane emissions in western Saskatchewan, Canada

description: Methane emission estimates for the oil and gas industry in southwestern Saskatchewan, Canada, from mobile and stationary (similar to Other Test Method 33A) measurements.
description: This dataset supports the published manuscript "Active and inactive oil and gas sites contribute to methane emissions in western Saskatchewan, Canada". 
https://doi.org/10.1525/elementa.2022.00014
DOI: 10.5683/sp3/vjvy1d
title: Creditor Reporting System (CRS), 1973-1998

description: &lt;p&gt;Detailed data for long- and short-term debt stocks and service payments. Data are available for major country group, individual countries, and territories. The Creditor Reporting System (CRS) is an information system comprised of data on Official Development Assistance (ODA) and Official Aid (OA). The system has been in existence since 1967 and is sponsored jointly by the OECD and the World Bank, and operated by the OECD. A subset of the CRS consists of individual grant and loan commitments (between 6000-30000 transactions a year) submitted by DAC donors (22 Members) and multilateral institutions on a regular basis. Reporters are asked to supply (in their national currency), detailed financial information on the commitment (to the developing country) such as: terms of repayment (for loans), tying status and sector allocation. The secretariat converts the amounts of the projects into US dollars using the annual average exchange rates.&lt;/p&gt;

&lt;p&gt;11 data files (number of logical records varies; csv (comma-separated) format); accompanying documentation (1 PDF file)&lt;/p&gt;
description: International development statistics. 2000 ed.
description: 11 data files (number of logical records varies; csv (comma-separated) format); accompanying documentation (1 PDF file). Original dissemination medium: CD-ROM
DOI: 10.5683/sp3/fnrhj2
title: Documentation for McGill Librarian Knowledge Synthesis Search Materials Repository

description: This dataset contains guidance and documentation on standard file formats, conventions, and licensing for McGill librarians depositing KS materials. Documentation includes a README file with descriptions and examples regarding entering dataset metadata fields in addition to an outline of the structure of the higher level Dataverse repository and sub-repositories. The README also contains a data management plan (DMP) that outlines standard file format and naming conventions for KS deposits.
DOI: 10.15468/dl.9whbvr
title: Occurrence Download

description: A dataset containing 510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation, Material sample)",
 "Country is United States of America",
 "TaxonKey is Nyssa biflora",
 "Year 2000-2019"
 ]
}

 The dataset includes 510 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046588-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5683/sp3/dpiieh
title: Streetlearn Intra-City Geolocation Dataset

description: We provide a complete set of SIFT keypoint descriptors (4,096 keypoints per image) for the complete Streetlearn dataset coverage of Manhattan and Pittsburgh. This highly densely sampled Streetlearn dataset of imagery was used to develop an accurate inter-city predictor and then experimentally resolve, for the first time, the intra-city performance limits of framing image geolocation as a regression-type problem.

Also included are mapping files relating each of the numerically labeled imaged to the original Streetlearn panorama id of each city.

Finally, we provide zipped archives containing the annually separated imagery considered for our temporal model experiment.

Only a sample of 1000 descriptors for each of Manhattan and Pittsburgh are provided here. The complete dataset of descriptors (~59GB in total) is available upon reasonable request.
DOI: 10.5683/sp3/pyc4ry
title: Interviews with 16 Attending Veterinarians at Canadian universities regarding institutional transparency

description: The objective of our study was to describe perceptions of transparency among Attending Veterinarians at different universities across Canada. Semi-structured, open-ended interviews were used to describe perceptions and experiences of 16 Attending Veterinarians relating to animal research transparency
DOI: 10.5683/sp3/b0dggh
title: Figure 6_raw data

description: Raw Image data that were analysed to be presented in Figure 6. &lt;br&gt;
If image data is not of interest, see https://doi.org/10.5683/SP2/0SHJNT where we uploaded the final data plotted in Figure 6. &lt;br&gt;
&lt;br&gt;
Here see "Figure6_SummarizeColocImageData.xlsx" for summary of Image data including cell line used, BH3 mimetics tested and size of datasets. This helps navigate the subfolders to find the images of interest.&lt;br&gt;
Data was organised by date of the experiment. &lt;br&gt;&lt;br&gt;
Within each folder see, '.Tiffs' exported from PerkinElmer Harmony software. Files names for example "r02c02f01p01-ch1..." indicating the image is from row 2, column 2, field of view 1, position 1 and channel 1. &lt;br&gt;&lt;br&gt;
&lt;u&gt;Within each folder see "Analysis" Sub folder where one can find: &lt;/u&gt; &lt;br&gt;
 -"SaveImagingConfiguration.xlsx" where we saved the imaging settings from the Phenix microscope. The objective lens, excitation/emission settings for channels 1,2,3,4 (in order that they appear), and number of fields of view acquired for that experiment can be found here.&lt;br&gt;
 -.xlsx file with "platemap" included in filename. Shows detailed map of Cells/Treatment within 384 well plate. Use Row/Column information to navigate the image data. &lt;br&gt;
 -Subfolder labelled "CP_results" : include results the object-level (single cell) results exported from Cell Profiler. These data were plotted separately in GraphPad Prism (see .pzf file) to determine the states o from each replicate. &lt;br&gt;

Then, median values were plotted in Figure 6 from 3+ replicates. See "Figure6_CombinedFinalColocResults.xlsx" where we combine the final results ultimately plotted in Figure 6.&lt;br&gt;
DOI: 10.5683/sp3/veibvl
title: University Student Mental Health [Student_Mental_Health_2021-10-10]

description: The University Student Mental Health data was gathered during the fall of 2020. This online survey included sections on demographics, mental health, changes in mental health during the pandemic, self-care habits (sleep, exercise, emotion regulation, social support, and mindfulness), and both recreation (athletics partying, games, and watching online videos) and academic hobbies (studying, participating in academic organizations, attending office hours, and using educational resources).
description: Universe (sample population): Participants in this study were university students who self- reported being registered in a four-year undergraduate program in Canada.

Time method: Cross-sectional

Subject: Social Sciences, Psychology, clinical psychology

Collection mode: Online via Qualtrics.

Type of research instrument: Online questionnaire (see included file: 02_University_Student_Mental_Health_2021-10-10)

Cleaning operations: Participants who either incorrectly answered the catch question (Please select all of the fruit; available options: apple, car, dog, banana), or who did not finish the survey, were excluded and removed from the dataset.
DOI: 10.5683/sp3/ft8g09
title: Sub-fossil crustacean zooplankton relative abundances from 101 lakes across Canada
title: Abondances relatives du zooplancton de crustacés subfossiles provenant de 101 lacs à travers le Canada

description: This data set contains cladoceran sub-fossil relative abundances for 101 lakes across Canada sampled as part of the NSERC Canadian Lake Pulse Network project. Lakes were sampled once, over three summers (2017-2018-2019). Cores were collected using a gravity corer in the deepest point of each lake and were sectioned on site with a vertical extruder. Each lake was sampled for a “top” sediment sample, represented by the first centimeter of the surface of the sediment core, and a “bottom” sediment sample, corresponding to the 1 cm of sediment located between 3 and 4 cm from the base of the core. Cladoceran extraction and preparation followed the protocol from Korhola and Rautio (2001). Cladocerans were identified using DM 2500 Leica compound inverted microscope under 200X-400X magnification with a minimal count size of 100 individuals. Identification at the species, genus, or species complex level followed Szeroczynska and Sarmaja-Korjonen (2007) and Korosi and Smol (2012a; b).

Sites are identified with Lake ID number, followed by “T” for top samples and “B” for bottom samples. Lakes IDs with respective locations (longitude and latitude coordinates) and Continental Basin allocations can be found here: https://doi.org/10.5281/zenodo.4701262

References

Korhola, A., and M. Rautio. 2001. Cladocera and other branchiopod crustaceans, p. 225–234. In J.P. Smol, H.J.B. Birks, and W.M. Last [eds.], Tracking Environmental Change Using Lake Sediments. Springer.

Korosi, J. B., and J. P. Smol. 2012a. An illustrated guide to the identification of cladoceran subfossils from lake sediments in northeastern North America: Part 1-the Daphniidae, Leptodoridae, Bosminidae, Polyphemidae, Holopedidae, Sididae, and Macrothricidae. J. Paleolimnol. 48: 571–586. doi:10.1007/S10933-012-9632-3

Korosi, J. B., and J. P. Smol. 2012b. An illustrated guide to the identification of cladoceran subfossils from lake sediments in northeastern North America: Part 2-the Chydoridae. J. Paleolimnol. 48: 587–622.

Szeroczyfiska, K., and K. Sarmaja-Korjonen. 2007. Atlas of Subfossil Cladocera from Central and Northern Europe, Friends of the Lower Vistula Society, Warsaw, Pol.
description: Relative abundances of 58 cladoceran zooplankton species, genus, or species complexes.
DOI: 10.5683/sp3/od7p4n
title: Land use fractions and human impact index in 101 Canadian lake watersheds
title: Utilisation des terres et indice d'impact humain dans 101 bassins versants de lacs canadiens

description: Land use fractions (urban, mines, agriculture, pasture, forestry, managed grassland, water and natural landscape) and associated human impact index in 101 lake watersheds sampled as part the NSERC Canadian Lake Pulse Network project. Land use and human impact index were calculated as described in Huot et al. (2019).

Lakes IDs with respective locations (longitude and latitude coordinates) and Continental Basin allocations can be found here: https://doi.org/10.5281/zenodo.4701262

Reference:

Huot, Y., C. A. Brown, G. Potvin, and others. 2019. The NSERC Canadian Lake Pulse Network: A national assessment of lake health providing science for water management in a changing climate. Sci. Total Environ. 695: 133668. doi:10.1016/j.scitotenv.2019.133668
description: Land use types: urban, mines, agriculture, pasture, forestry, managed grassland, water and natural landscape.

Units: Land use fractions (Relative watershed land use).

Human impact index, varying between 0 and 1, represents the mean of all the values across each cell in the raster layer of land use within a watershed (no units).
DOI: 10.5683/sp3/97c9ob
title: Replication Data and Code for: The double impact of deep social unrest and a pandemic: Evidence from Chile

description: The data and programs replicate tables and figures from "The double impact of deep social unrest and a pandemic: Evidence from Chile", byMadeira. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/jetqho
title: Replication Data and Code for: Transition model for coronavirus management

description: The data and programs replicate tables and figures from "Transition model for coronavirus management", by Djogbenou, Gourieroux, Jasiak, Rilstone and Bandehali. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/7bpoq8
title: Replication Data and Code for: Sectoral digital intensity and GDP growth after a large employment shock: A simple extrapolation exercise

description: The data and programs replicate tables and figures from "Sectoral digital intensity and GDP growth after a large employment shock: A simple extrapolation exercise", by Gallipoli and Makridis. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/wqscgd
title: Replication Data and Code for: Macroeconomic uncertainty and the COVID-19 pandemic: Measure and impacts on the Canadian economy

description: The data and programs replicate tables and figures from "Macroeconomic uncertainty and the COVID-19 pandemic: Measure and impacts on the Canadian economy", by Moran, Stevanovic and Touré. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/1gcjli
title: Replication Data and Code for: Pandemics through the lens of occupations

description: The data and programs replicate tables and figures from "Pandemics through the lens of occupations", by Chopra, Devereux and Lahiri. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/mvumlf
title: Replication Data and Code for: US Fiscal policy during and after the coronavirus

description: The data and programs replicate tables and figures from "US Fiscal policy during and after the coronavirus", by Gomme. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/iixxpb
title: Replication Data and Code for: A macroeconomic model of an epidemic with silent transmission and endogenous self-isolation

description: The data and programs replicate tables and figures from "A macroeconomic model of an epidemic with silent transmission and endogenous self-isolation", by Diez de los Rios. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/owrplt
title: Replication Data and Code for: Compliance with social distancing: Theory and empirical evidence from Ontario during COVID-19

description: The data and programs replicate tables and figures from "Compliance with social distancing: Theory and empirical evidence from Ontario during COVID-19", by Papanastasiou, Ruffle and Zheng. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/vy6nyl
title: Replication Data and Code for: Quantifying the economic impacts of COVID-19 policy responses on Canada’s provinces in (almost) real time

description: The data and programs replicate tables and figures from "Quantifying the economic impacts of COVID-19 policy responses on Canada’s provinces in (almost) real time", by Cotton, Kashi, Lloyd-Ellis, Tremblay and Crowley. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/ylhnsk
title: Zooplankton functional trait database for Canadian lakes
title: Base de données sur les traits fonctionnels du zooplancton des lacs canadiens

description: This dataset contains functional traits of 102 crustacean zooplankton taxa sampled in 624 Canadian lakes (Pelagic sample), as well as 58 sub-fossil cladoceran taxa (Sediments sample) sampled in 101 lakes. Lakes were sampled across Canada as part of the NSERC Canadian LakePulse Network. The traits used are: feeding type (B(Bosmina)-filtration, C(Chydorus)-filtration, D(Daphia)-filtration, S(Sidae)-filtration, stationary suspension or raptorial), habitat (littoral, pelagic or intermediate) and trophic group (carnivore, herbivore, omnivore, or a combination of these). Pelagic species length of up to 10 individuals per taxon per lake were measured by BSA Environmental Services (Ohio, U.S.A.), and averaged for each taxon. Sediments sample lengths were either obtained from the literature (Demott & Kerfoot, 1982; Barnett et al., 2007; Griffiths et al., 2019), or from the Pelagic sample length data. Feeding type, habitat and trophic group functional traits were obtained from literature (Demott & Kerfoot, 1982; Barnett et al., 2007; Hébert et al., 2016; Griffiths et al., 2019).

References

Barnett, A. J., Finlay, K., & Beisner, B. (2007). Functional diversity of crustacean zooplankton communities: Towards a trait-based classification. Freshwater Biology, 52(5), 796–813. https://doi.org/10.1111/j.1365-2427.2007.01733.x

Demott, W. R., & Kerfoot, W. C. (1982). Competition among cladocerans: nature of the interaction between Bosmina and Daphnia. Ecology, 63(6), 1949–1966. https://doi.org/10.2307/1940132

Griffiths, K., Winegardner, A. K., Beisner, B. E., & Gregory-Eaves, I. (2019). Cladoceran assemblage changes across the Eastern United States as recorded in the sediments from the 2007 National Lakes Assessment, USA. Ecological Indicators, 96, 368–382. 061

Hébert, M.-P., Beisner, B. E., & Maranger, R. (2016). A compilation of quantitative functional traits for marine and freshwater crustacean zooplankton. Ecology. https://doi.org/10.1890/15-1275
DOI: 10.5683/sp3/jvm89b
title: Supplementary Data for "Myocytic androgen receptor overexpression does not affect sex differences in adaptation to chronic endurance exercise"

description: Supplementary Data for the work titled, "Myocytic androgen receptor overexpression does not affect sex differences in adaptation to chronic endurance exercise".
DOI: 10.5683/sp3/1dj2hj
title: Supplementary tables and figures

description: Supplementary Tables and Figures for "The impact of hyperglycemia upon BeWo trophoblast cell metabolic function: A multi-OMICS and functional metabolic analysis"
DOI: 10.5683/sp3/jl8hi9
title: Québec lakes sampling data: LimnoScenES project [2019]
title: Données d'échantillonnage des lacs du Québec : projet LimnoScenES [2019]

description: Data were collected in summer 2019, through 3 regions on Southern Québec (Estrie, Laurentides, Outaouais), Canada. For each sampled lake, data were collected for bacterioplankton, phytoplankton, zooplankton and environmental parameters.
description: Data for lake name, region, date, latitude (°), longitude (°), maximum depth (m), average depth (m), area (km²), water residence time (year-1), fetch (m); 

Lakes were sampled at the deepest point. Data collected for Secchi depth (m) and profiles of: dissolved oxygen (mg/L), temperature (°C), pH, BBE Phycoprobe (µg/L); 

Vertical net hauls across water column for crustacean zooplankton: species, size (mm), biomass (µg/L). Vertical tube samples for phytoplankton taxa, size (µm), biovolume (µL/L); 

Bottle samples (0.5m depth) were taken from each lake’s deep point for chlorophyll a (µg/L), total nitrogen (mg/L), total phosphorus (µg/L), dissolved organic carbon (mg/L), water color (A440) (m-1) and bacterial 16S metagenomics.
DOI: 10.5683/sp3/ybx0tv
title: Are there longitudinal effects of forest harvesting on carbon quality and flow and methylmercury bioaccumulation in primary consumers of temperate stream networks?

description: Catchment explanatory variables (catchment area, % harvest, logging road density, etc.) and response variables (dissolved organic matter quality, autochthony of a primary consumer as determined using hydrogen stable isotopes, and mercury in water and a primary consumer) measured at 12 to 13 streams along a longitudinal gradient in paired reference and harvested catchments in Ontario in 2016 and 2017.
DOI: 10.5683/sp3/pg3sfs
title: Functional Trait Database for Nova Scotian Coastal Barren, Green Roof, and Ruderal Flora

description: This is the first plant functional trait database for Nova Scotia, Canada. The data contained here were collected between 2016 and 2019 from locations around Halifax, Nova Scotia. The species selected for trait collection were chosen based on species inventories taken across Nova Scotian coastal barrens and from green roofs at Saint Mary’s University. The purpose of the coastal barren trait data was to understand community assembly in this understudied ecosystem. The green roof inventory was included as coastal barren species are known to succeed on green roofs in Nova Scotia. The green roof trait data was used to answer questions surrounding coexistence and trait divergence, and community assembly and spatial heterogeneity. In total, this database contains 14,341 trait values from 203 species comprising 130 genera and 53 families. The majority of species are commonly found on coastal barrens (84 species), disturbed sites (48 species), and forests (27 species). Additionally, this database contains trait data for 30 species that have been successfully established (survival for &gt;1 year) on green roofs in Nova Scotia and ruderal species that commonly colonize both green roofs and coastal barens. This database contains 12 plant functional traits: leaf thickness (203 species), leaf area (203 species), specific leaf area (203 species), leaf dry matter content (203 species), plant height (203 species), canopy width (203 species), seed weight (79 species), seed shape (61 species), root radius (22 species), leaf phosphorus content (3 species), leaf nitrogen content (30 species), and leaf carbon content (30 species). The species in this database can be subdivided into 10 growth forms, with the majority of species characterized as forbs (75 species), shrubs (56 species), or graminoids (33 species).
description: See NS Flora Guide for details on data