cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20729262.v1
title: AMORPHOUS CUSEP2/GRAPHENE COMPOSITES AS ANODE MATERIAL FOR ADVANCED POTASSIUM-ION BATTERY

description: The ternary amorphous CuSeP2 was designed and prepared as the anode material of potassium ion battery for the first time, and its electrochemical performance was also investigated. After ball-milling with commercial graphene powder, it is used as the anode material for potassium ion battery with reversible specific capacity up to 300 mAh g-1, and the corresponding initial coulombic efficiency is close to 60%. What’s more, the specific capacity remains above 150 mAh g-1 after 100 cycles at 200 mA g-1. When increasing the current density to 1000 mA g-1, the CuSeP2/graphene composites still has a potassium storage specific capacity of 100 mAh g-1. Our results show that the potassium storage mechanism of the ternary CuSeP2 anode material is a typical conversion reaction and the introduction of Cu can not only buffer the volume expansion during the subsequent electrochemical reaction, but also effectively enhance the electrochemical reversibility of potassium ion.
DOI: 10.6084/m9.figshare.22302775
title: ChestDR: Thoracic Diseases Screening in Chest Radiography

description: A total of 4,848 frontal radiography images (from 4,848 patients) are provided in ChestDR, collected from two regional hospitals in Hubei and Jiangxi Province, China. A detailed distribution of 19 common thoracic diseases is presented.
DOI: 10.6084/m9.figshare.22302796
title: Endo: Lesion Classification in Colonoscopy Images

description: A total of 80 patients’ 3,865 images (with an average size of 1280*1024 ) recorded during the colonoscopy examination on the workstations in Renji Hospital are produced in the Endo dataset. Four types of lesions, i.e., ulcer, erosion, polyp, and tumor are included.
DOI: 10.6084/m9.figshare.22302796.v1
title: Endo: Lesion Classification in Colonoscopy Images

description: A total of 80 patients’ 3,865 images (with an average size of 1280*1024 ) recorded during the colonoscopy examination on the workstations in Renji Hospital are produced in the Endo dataset. Four types of lesions, i.e., ulcer, erosion, polyp, and tumor are included.
DOI: 10.6084/m9.figshare.22302799
title: ColonPath: Tumor Tissue Screening in Pathology Patches

description: A total of 396 patients’ 10,009 large tissue patches (with a uniform size of 1024*1024 ) of colonoscopy pathology examination will be available in ColonPath.
DOI: 10.6084/m9.figshare.22302799.v1
title: ColonPath: Tumor Tissue Screening in Pathology Patches

description: A total of 396 patients’ 10,009 large tissue patches (with a uniform size of 1024*1024 ) of colonoscopy pathology examination will be available in ColonPath.
DOI: 10.6084/m9.figshare.12865615
title: Identification of hub genes, miRNAs and regulatory factors relevant for Duchenne muscular dystrophy by bioinformatics analysis

description: Duchenne muscular dystrophy (DMD) is currently the most commonly diagnosed form of muscular dystrophy due to mutations in the dystrophin gene. However, its pathological process remains unknown and there is a lack of specific molecular biomarkers. The aim of our study is to explore key regulatory connections underlying the progression of DMD. The gene expression profile dataset GSE38417 of DMD was obtained from the Gene Expression Omnibus (GEO) database. The differentially expressed genes (DEGs) between DMD patients and healthy controls were screened using geo2R, followed by Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) pathway enrichment analyses. Then a protein–protein interaction (PPI) network and sub-network of modules were constructed. To investigate the regulatory network underlying DMD, a global triple network including miRNAs, mRNAs and transcription factors (TFs) was constructed. A total of 1811 DEGs were found between the DMD and control groups, among which HERC5, SKP2 and FBXW5 were defined as hub genes with a degree of connectivity &gt;35 in the PPI network. Furthermore, the five TFs ZNF362, ATAT1, SPI1, TCF12 and ABCF2, as well as the eight miRNAs miR-124a, miR-200b/200c/429, miR-19a/b, miR-23a/b, miR-182, miR-144, miR-498 and miR-18a/b were identified as playing crucial roles in the molecular pathogenesis of DMD. This paper provides a comprehensive perspective on the miRNA–TF–mRNA co-regulatory network underlying DMD, although the bioinformatic findings need further validation in future studies.
DOI: 10.6084/m9.figshare.14437559.v15
title: Additional file of Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate

description: Additional file of Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate
DOI: 10.6084/m9.figshare.12864931
title: Additional file 7 of Upregulation of METTL14 mediates the elevation of PERP mRNA N6 adenosine methylation promoting the growth and metastasis of pancreatic cancer

description: Additional file 7: Table S2. m6A patient peak annotation.
DOI: 10.6084/m9.figshare.12864934
title: Additional file 8 of Upregulation of METTL14 mediates the elevation of PERP mRNA N6 adenosine methylation promoting the growth and metastasis of pancreatic cancer

description: Additional file 8: Table S3. shMETTL14 vs shCtrl differential expression.
DOI: 10.6084/m9.figshare.12864937.v1
title: Additional file 9 of Upregulation of METTL14 mediates the elevation of PERP mRNA N6 adenosine methylation promoting the growth and metastasis of pancreatic cancer

description: Additional file 9: Table S4. shMETTL14 m6A experiment peak annotation.
DOI: 10.6084/m9.figshare.12864803
title: Additional file 1 of Comparative transcriptome analysis provides insight into regulation pathways and temporal and spatial expression characteristics of grapevine (Vitis vinifera) dormant buds in different nodes

description: Additional file 1: Figure S1. Correlation between groups of comparisons. Figure S2. Mapman analysis of different pairs. (a) Metabolism overview of Mar vs Feb. (b) Metabolism overview of Feb vs Jan. (c) Metabolism overview of Jan vs Dec. (d) Metabolism overview of Dec vs Nov.
DOI: 10.6084/m9.figshare.14437583
title: Additional file 2 of Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate

description: Additional file 2: Specific genes, shared genes and disrupted open reading frames. Contains lists of isolate specific genes, genes shared between two isolates and putative pseudogenes. A list of artificially disrupted open reading frames in the P15 data is also included. (XLS 264 KB)
DOI: 10.6084/m9.figshare.12864778
title: Additional file 1 of Surgery outcomes of lamellar macular eyes with or without lamellar hole-associated epiretinal proliferation: a meta-analysis

description: Additional file 1: Supplementary 1.. Newcastle-Ottawa quality assessment T scale.
DOI: 10.6084/m9.figshare.12864778.v1
title: Additional file 1 of Surgery outcomes of lamellar macular eyes with or without lamellar hole-associated epiretinal proliferation: a meta-analysis

description: Additional file 1: Supplementary 1.. Newcastle-Ottawa quality assessment T scale.
DOI: 10.6084/m9.figshare.14437559.v8
title: Additional file of Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate

description: Additional file of Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate
DOI: 10.6084/m9.figshare.12864806
title: Additional file 2 of Comparative transcriptome analysis provides insight into regulation pathways and temporal and spatial expression characteristics of grapevine (Vitis vinifera) dormant buds in different nodes

description: Additional file 2: Table S1. The information about RNA-Seq data. Table S2. Gene expression information. Table S3. FPKM values of all genes. Table S4. GO analytical data of each pair. Table S5. KEGG analytical data of each pair. Table S6. Mapman dataset. Table S7. Analysis of transcription factors. Table S8. Information about genomic localization and sequence length of all novel genes. Table S9. Analysis of temporal and spatial expression differences of genes at different nodes.
DOI: 10.6084/m9.figshare.14437559.v10
title: Additional file of Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate

description: Additional file of Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate
DOI: 10.6084/m9.figshare.12864943
title: Additional file 1 of Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease

description: Additional file 1: Supplementary Tables.
DOI: 10.6084/m9.figshare.12864943.v1
title: Additional file 1 of Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease

description: Additional file 1: Supplementary Tables.
DOI: 10.6084/m9.figshare.12864956
title: Additional file 2 of Predicting viral exposure response from modeling the changes of co-expression networks using time series gene expression data

description: Additional file 2 An example of the R code used in the paper.
DOI: 10.6084/m9.figshare.20729314
title: ANALYSIS AND INTERVENTIONS OF COMMON SPORTS INJURIES IN COLLEGE BASKETBALL PLAYERS

description: ABSTRACT Introduction As college basketball continues to develop, more and more college students are joining the sport, and the resulting sports injuries have also gradually increased, affecting the quality of life and academic performance. Objective Analyze the most common sports injuries and offer solutions for the safe practice of college basketball. Methods This article studies, through interviews and literature review, the basketball injuries of college students, analyze the main causes of sports injuries, and presents corresponding countermeasures to promote the safe development of sports education in colleges. Results The main injuries were during training, excessive force, and inadequate preparation. Deficient muscle work is also associated with most of these injuries. Conclusion Basketball is highly competitive and popular on college campuses. It is a sport that can exercise and enrich the extracurricular life of college students, requiring from its practitioners greater attention in the pre-training warm-up phase and parallel muscle strengthening to reduce its major injuries in college students. Level of evidence II; Therapeutic studies - investigation of treatment outcomes
DOI: 10.6084/m9.figshare.12864904
title: Additional file 10 of Upregulation of METTL14 mediates the elevation of PERP mRNA N6 adenosine methylation promoting the growth and metastasis of pancreatic cancer

description: Additional file 10: Table S5. Reagents and antibodies.
DOI: 10.6084/m9.figshare.14437715.v1
title: Additional file of Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera

description: Additional file of Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera
DOI: 10.6084/m9.figshare.12864904.v1
title: Additional file 10 of Upregulation of METTL14 mediates the elevation of PERP mRNA N6 adenosine methylation promoting the growth and metastasis of pancreatic cancer

description: Additional file 10: Table S5. Reagents and antibodies.
DOI: 10.6084/m9.figshare.14437604
title: Additional file 9 of Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate

description: Additional file 9: Structural variation in the Giardia genomes. Genome structural variation detected during synteny analysis of the P15, WB and GS genomes. (XLS 74 KB)
DOI: 10.6084/m9.figshare.14437604.v1
title: Additional file 9 of Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate

description: Additional file 9: Structural variation in the Giardia genomes. Genome structural variation detected during synteny analysis of the P15, WB and GS genomes. (XLS 74 KB)
DOI: 10.6084/m9.figshare.20729299.v1
title: EFFECTS OF DIETARY SUPPLEMENTATION ON THE TRAINING OF FEMALE TENNIS PLAYERS IN HOT CLIMATES

description: ABSTRACT Introduction A tennis match may last up to four hours with long intervals between moves of medium to high exercise intensity for 10 minutes and aerobic characteristic that requires specific sources of energy. Inappropriate diets can negatively impact sports performance and delay the recovery phase. Fortified wheat germ protein powder has the supplementation characteristics required in aerobic activities, although there are no practical studies on its impacts on the work performance of female tennis athletes. Objective Explore the influence of two weeks of training in a warm environment combined with nutritional intervention on the performance of female tennis players. Methods It was observed by testing the immunological indices of elite female tennis players while training their changes and their effects on nutritional intervention. Results The increase in serum CK activity was closely related to the amount of exercise. Many studies have shown that serum CK activity increased significantly after strenuous exercise, and the serum CK value of subjects in the test group was significantly lower than that of the control group, showing better adaptability to exercise. Compared with before the nutritional intervention, the athletes’ weight decreased slightly, and the body fat percentage decreased significantly after the nutritional intervention. Compared with before nutritional intervention, sugar and salt supplements in athletes were significantly increased (P&lt;0.05). Sweating rate, hydration rate, and hydration/sudden rate were also significantly increased (P&lt;0.05). Conclusion Strengthening wheat germ protein supplementation may improve the nutritional albumin level in female tennis players, manifested in blood levels and immune function performance. Level of evidence II; Therapeutic studies - investigation of treatment outcomes.
DOI: 10.6084/m9.figshare.14437718.v1
title: Additional file 1 of Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera

description: Additional file 1: Table S1. Excel file containing the supplementary table with all unigene locations, their coordinates on the G. clavigera genome, the ESTs that mapped to each UL, relevant annotations, and expression analysis results. (XLS 5 MB)
DOI: 10.6084/m9.figshare.12340724.v3
title: The type I-E CRISPR-Cas system influences the acquisition of <i>bla</i><sub>KPC</sub>-IncF plasmid in <i>Klebsiella pneumonia</i>

description: <i>Klebsiella pneumoniae</i> carbapenemase (KPC)-producing <i>K. pneumoniae</i> (KPC-KP) have disseminated worldwide and emerged as major threats to public health. Of epidemiological significance, the international pandemic of KPC-KP is primarily associated with CG258 isolates and <i>bla</i><sub>KPC</sub>-IncF plasmids. CRISPR-Cas system is an adaptive immune system that can hinder gene expansion driven by horizontal gene transfer. Because of <i>bla</i><sub>KPC</sub>-IncF plasmids are favored by CG258 <i>K. pneumoniae,</i> it was of interest to examine the co-distribution of CRISPR and <i>bla</i><sub>KPC</sub>-IncF plasmids in such isolates. We collected 459 clinical <i>K. pneumoniae isolates</i> in China and collected 203 global whole-genome sequences in GenBank to determine the prevalence of CRISPR-Cas systems. We observed that CRISPR-Cas system was significantly scarce in the CG258 lineage and <i>bla</i><sub>KPC</sub>-positive isolates. Furthermore, the results of conjugation and plasmid stability assay fully demonstrated the CRIPSR-Cas system in <i>K. pneumoniae</i> could effectively hindered <i>bla</i><sub>KPC</sub>-IncF plasmids invasion and existence. Notably, most <i>bla</i><sub>KPC</sub>-IncF plasmids were also proved to be good targets of CRISPR owing to carry matched and functional protospacers and PAMs. Overall, our work suggests that type I-E CRISPR-Cas systems could impact the spread of <i>bla</i><sub>KPC</sub> in <i>K. pneumoniae</i> populations, and the scarcity of CRISPR-Cas system was one of potential factors leading to the propagation of <i>bla</i><sub>KPC</sub>-IncF plasmids in CG258 <i>K. pneumoniae</i>.
DOI: 10.6084/m9.figshare.12864907
title: Additional file 11 of Upregulation of METTL14 mediates the elevation of PERP mRNA N6 adenosine methylation promoting the growth and metastasis of pancreatic cancer

description: Additional file 11: Table S6. Samples’ information.
DOI: 10.6084/m9.figshare.12340724.v5
title: The type I-E CRISPR-Cas system influences the acquisition of <i>bla</i><sub>KPC</sub>-IncF plasmid in <i>Klebsiella pneumonia</i>

description: <i>Klebsiella pneumoniae</i> carbapenemase (KPC)-producing <i>K. pneumoniae</i> (KPC-KP) have disseminated worldwide and emerged as major threats to public health. Of epidemiological significance, the international pandemic of KPC-KP is primarily associated with CG258 isolates and <i>bla</i><sub>KPC</sub>-IncF plasmids. CRISPR-Cas system is an adaptive immune system that can hinder gene expansion driven by horizontal gene transfer. Because of <i>bla</i><sub>KPC</sub>-IncF plasmids are favored by CG258 <i>K. pneumoniae,</i> it was of interest to examine the co-distribution of CRISPR and <i>bla</i><sub>KPC</sub>-IncF plasmids in such isolates. We collected 459 clinical <i>K. pneumoniae isolates</i> in China and collected 203 global whole-genome sequences in GenBank to determine the prevalence of CRISPR-Cas systems. We observed that CRISPR-Cas system was significantly scarce in the CG258 lineage and <i>bla</i><sub>KPC</sub>-positive isolates. Furthermore, the results of conjugation and plasmid stability assay fully demonstrated the CRIPSR-Cas system in <i>K. pneumoniae</i> could effectively hindered <i>bla</i><sub>KPC</sub>-IncF plasmids invasion and existence. Notably, most <i>bla</i><sub>KPC</sub>-IncF plasmids were also proved to be good targets of CRISPR owing to carry matched and functional protospacers and PAMs. Overall, our work suggests that type I-E CRISPR-Cas systems could impact the spread of <i>bla</i><sub>KPC</sub> in <i>K. pneumoniae</i> populations, and the scarcity of CRISPR-Cas system was one of potential factors leading to the propagation of <i>bla</i><sub>KPC</sub>-IncF plasmids in CG258 <i>K. pneumoniae</i>.
DOI: 10.6084/m9.figshare.12340724.v7
title: The type I-E CRISPR-Cas system influences the acquisition of <i>bla</i><sub>KPC</sub>-IncF plasmid in <i>Klebsiella pneumonia</i>

description: <i>Klebsiella pneumoniae</i> carbapenemase (KPC)-producing <i>K. pneumoniae</i> (KPC-KP) have disseminated worldwide and emerged as major threats to public health. Of epidemiological significance, the international pandemic of KPC-KP is primarily associated with CG258 isolates and <i>bla</i><sub>KPC</sub>-IncF plasmids. CRISPR-Cas system is an adaptive immune system that can hinder gene expansion driven by horizontal gene transfer. Because of <i>bla</i><sub>KPC</sub>-IncF plasmids are favored by CG258 <i>K. pneumoniae,</i> it was of interest to examine the co-distribution of CRISPR and <i>bla</i><sub>KPC</sub>-IncF plasmids in such isolates. We collected 459 clinical <i>K. pneumoniae isolates</i> in China and collected 203 global whole-genome sequences in GenBank to determine the prevalence of CRISPR-Cas systems. We observed that CRISPR-Cas system was significantly scarce in the CG258 lineage and <i>bla</i><sub>KPC</sub>-positive isolates. Furthermore, the results of conjugation and plasmid stability assay fully demonstrated the CRIPSR-Cas system in <i>K. pneumoniae</i> could effectively hindered <i>bla</i><sub>KPC</sub>-IncF plasmids invasion and existence. Notably, most <i>bla</i><sub>KPC</sub>-IncF plasmids were also proved to be good targets of CRISPR owing to carry matched and functional protospacers and PAMs. Overall, our work suggests that type I-E CRISPR-Cas systems could impact the spread of <i>bla</i><sub>KPC</sub> in <i>K. pneumoniae</i> populations, and the scarcity of CRISPR-Cas system was one of potential factors leading to the propagation of <i>bla</i><sub>KPC</sub>-IncF plasmids in CG258 <i>K. pneumoniae</i>.
DOI: 10.6084/m9.figshare.12864907.v1
title: Additional file 11 of Upregulation of METTL14 mediates the elevation of PERP mRNA N6 adenosine methylation promoting the growth and metastasis of pancreatic cancer

description: Additional file 11: Table S6. Samples’ information.
DOI: 10.6084/m9.figshare.12340724.v13
title: The type I-E CRISPR-Cas system influences the acquisition of <i>bla</i><sub>KPC</sub>-IncF plasmid in <i>Klebsiella pneumonia</i>

description: <i>Klebsiella pneumoniae</i> carbapenemase (KPC)-producing <i>K. pneumoniae</i> (KPC-KP) have disseminated worldwide and emerged as major threats to public health. Of epidemiological significance, the international pandemic of KPC-KP is primarily associated with CG258 isolates and <i>bla</i><sub>KPC</sub>-IncF plasmids. CRISPR-Cas system is an adaptive immune system that can hinder gene expansion driven by horizontal gene transfer. Because of <i>bla</i><sub>KPC</sub>-IncF plasmids are favored by CG258 <i>K. pneumoniae,</i> it was of interest to examine the co-distribution of CRISPR and <i>bla</i><sub>KPC</sub>-IncF plasmids in such isolates. We collected 459 clinical <i>K. pneumoniae isolates</i> in China and collected 203 global whole-genome sequences in GenBank to determine the prevalence of CRISPR-Cas systems. We observed that CRISPR-Cas system was significantly scarce in the CG258 lineage and <i>bla</i><sub>KPC</sub>-positive isolates. Furthermore, the results of conjugation and plasmid stability assay fully demonstrated the CRIPSR-Cas system in <i>K. pneumoniae</i> could effectively hindered <i>bla</i><sub>KPC</sub>-IncF plasmids invasion and existence. Notably, most <i>bla</i><sub>KPC</sub>-IncF plasmids were also proved to be good targets of CRISPR owing to carry matched and functional protospacers and PAMs. Overall, our work suggests that type I-E CRISPR-Cas systems could impact the spread of <i>bla</i><sub>KPC</sub> in <i>K. pneumoniae</i> populations, and the scarcity of CRISPR-Cas system was one of potential factors leading to the propagation of <i>bla</i><sub>KPC</sub>-IncF plasmids in CG258 <i>K. pneumoniae</i>.
DOI: 10.6084/m9.figshare.12340724.v16
title: The type I-E CRISPR-Cas system influences the acquisition of <i>bla</i> <sub>KPC</sub>-IncF plasmid in <i>Klebsiella pneumonia</i>

description: <i>Klebsiella pneumoniae</i> carbapenemase (KPC)-producing <i>K. pneumoniae</i> (KPC-KP) have disseminated worldwide and emerged as major threats to public health. Of epidemiological significance, the international pandemic of KPC-KP is primarily associated with CG258 isolates and <i>bla</i>
 <sub>KPC</sub>-IncF plasmids. CRISPR-Cas system is an adaptive immune system that can hinder gene expansion driven by horizontal gene transfer. Because of <i>bla</i>
 <sub>KPC</sub>-IncF plasmids are favored by CG258 <i>K. pneumoniae,</i> it was of interest to examine the co-distribution of CRISPR and <i>bla</i>
 <sub>KPC</sub>-IncF plasmids in such isolates. We collected 459 clinical <i>K. pneumoniae isolates</i> in China and collected 203 global whole-genome sequences in GenBank to determine the prevalence of CRISPR-Cas systems. We observed that CRISPR-Cas system was significantly scarce in the CG258 lineage and <i>bla</i>
 <sub>KPC</sub>-positive isolates. Furthermore, the results of conjugation and plasmid stability assay fully demonstrated the CRIPSR-Cas system in <i>K. pneumoniae</i> could effectively hindered <i>bla</i>
 <sub>KPC</sub>-IncF plasmids invasion and existence. Notably, most <i>bla</i>
 <sub>KPC</sub>-IncF plasmids were also proved to be good targets of CRISPR owing to carry matched and functional protospacers and PAMs. Overall, our work suggests that type I-E CRISPR-Cas systems could impact the spread of <i>bla</i>
 <sub>KPC</sub> in <i>K. pneumoniae</i> populations, and the scarcity of CRISPR-Cas system was one of potential factors leading to the propagation of <i>bla</i>
 <sub>KPC</sub>-IncF plasmids in CG258 <i>K. pneumoniae</i>.