cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e113121v1-110340
title: Replication data for: The Economic Effects of the Abolition of Serfdom: Evidence from the Russian Empire

description: We document substantial increases in agricultural productivity, industrial output, and peasants' nutrition in Imperial Russia as a result of the abolition of serfdom in 1861. Before the emancipation, provinces where serfs constituted the majority of agricultural laborers lagged behind provinces that primarily relied on free labor. The emancipation led to a significant but partial catch up. Better incentives of peasants resulting from the cessation of ratchet effect were a likely mechanism behind a relatively fast positive effect of reform on agricultural productivity. The land reform, which instituted communal land tenure after the emancipation, diminished growth in productivity in repartition communes.
description: European provinces and districts of the former Russian empire in the 19th century.
description: unique province-level and district-level panel datasets collected from various official statistical volumes
DOI: 10.5517/ccdc.csd.cc294z4l
title: CCDC 2119939: Experimental Crystal Structure Determination

description: Related Article: Qidi Ran, Yan Zhang, Jun Yang, Rongxing He, Lei Zhou, Shanshan Hu|2022|J.Mater.Chem.C|10|1999|doi:10.1039/D1TC05140G
DOI: 10.5517/ccdc.csd.cc296snz
title: CCDC 2121691: Experimental Crystal Structure Determination

description: Related Article: Philip J. Chevis, Thanika Promchai, Christopher Richardson, Thunwadee Limtharakul, Stephen G. Pyne|2022|Chem.Commun.|58|2220|doi:10.1039/D1CC06775C
DOI: 10.5517/ccdc.csd.cc2988kf
title: CCDC 2123114: Experimental Crystal Structure Determination

description: Related Article: Yasukazu Hirao, Hajime Eto, Mitsuru Teraoka, Takashi Kubo|2022|Org.Biomol.Chem.|20|1671|doi:10.1039/D1OB02358F
DOI: 10.5517/ccdc.csd.cc29kbgp
title: CCDC 2131822: Experimental Crystal Structure Determination

description: Related Article: Adrián Sanchis-Perucho, José Martínez-Lillo|2022|Dalton Trans.|51|3323|doi:10.1039/D1DT04384F
DOI: 10.5517/ccdc.csd.cc29kbhq
title: CCDC 2131823: Experimental Crystal Structure Determination

description: Related Article: Adrián Sanchis-Perucho, José Martínez-Lillo|2022|Dalton Trans.|51|3323|doi:10.1039/D1DT04384F
DOI: 10.5517/ccdc.csd.cc29kbjr
title: CCDC 2131824: Experimental Crystal Structure Determination

description: Related Article: Adrián Sanchis-Perucho, José Martínez-Lillo|2022|Dalton Trans.|51|3323|doi:10.1039/D1DT04384F
DOI: 10.5517/ccdc.csd.cc297g67
title: CCDC 2122328: Experimental Crystal Structure Determination

description: Related Article: Huangjie Lu, Zhaofa Zheng, Jie Qiu, Yuan Qian, Jian-Qiang Wang, Jian Lin|2022|Dalton Trans.|51|3041|doi:10.1039/D1DT04225D
DOI: 10.5517/ccdc.csd.cc297g78
title: CCDC 2122329: Experimental Crystal Structure Determination

description: Related Article: Huangjie Lu, Zhaofa Zheng, Jie Qiu, Yuan Qian, Jian-Qiang Wang, Jian Lin|2022|Dalton Trans.|51|3041|doi:10.1039/D1DT04225D
DOI: 10.6084/m9.figshare.19225413
title: Normal-light(60W)-trap-data.xlsx

description: This dataset provides the number adult <i>Halyomorpha halys</i> found in black light, incandescent light, and pheromone traps monitored from May through October in Kyoto, Japan from 2010 - 2020. The dataset is used in the article, <b>Monitoring trap comparisons and seasonal phenology of brown marmorated stink bug (<i>Halyomorpha halys</i>) in Japan.</b>
DOI: 10.6084/m9.figshare.19225422
title: Phoromone-trap-data.xlsx

description: This dataset provides the number adult <i>Halyomorpha halys</i> found in black light, incandescent light, and pheromone traps monitored from May through October in Kyoto, Japan from 2010 - 2020. The dataset is used in the article, <b>Monitoring trap comparisons and seasonal phenology of brown marmorated stink bug (<i>Halyomorpha halys</i>) in Japan.</b>
DOI: 10.6084/m9.figshare.19225407.v1
title: Black-light-trap-data.xlsx

description: This dataset provides the number adult <i>Halyomorpha halys</i> found in black light, incandescent light, and pheromone traps monitored from May through October in Kyoto, Japan from 2010 - 2020. The dataset is used in the article, <b>Monitoring trap comparisons and seasonal phenology of brown marmorated stink bug (<i>Halyomorpha halys</i>) in Japan.</b>
DOI: 10.6084/m9.figshare.19225407
title: Black-light-trap-data.xlsx

description: This dataset provides the number adult <i>Halyomorpha halys</i> found in black light, incandescent light, and pheromone traps monitored from May through October in Kyoto, Japan from 2010 - 2020. The dataset is used in the article, <b>Monitoring trap comparisons and seasonal phenology of brown marmorated stink bug (<i>Halyomorpha halys</i>) in Japan.</b>
DOI: 10.6084/m9.figshare.19225413.v1
title: Normal-light(60W)-trap-data.xlsx

description: This dataset provides the number adult <i>Halyomorpha halys</i> found in black light, incandescent light, and pheromone traps monitored from May through October in Kyoto, Japan from 2010 - 2020. The dataset is used in the article, <b>Monitoring trap comparisons and seasonal phenology of brown marmorated stink bug (<i>Halyomorpha halys</i>) in Japan.</b>
DOI: 10.3886/e144981v1-110360
title: Data and Code for: Why is the Birth Rate Falling in the United States

description: This paper documents a set of facts about the dramatic decline in birth rates in the United States between 2007 and 2020 and explores possible explanations for it. The overall reduction in the birth rate reflects both very large declines within certain groups of women, including teens and Hispanic women – and smaller declines among demographic groups that comprise a large population share, including college-educated white women. We explore potential economic, policy, and social factors that might be responsible for the overall decline. We conclude from our empirical examination of possible factors that there is not a readily identifiable economic or policy factor or set of factors this is likely responsible for a substantial share of the decline. Instead, the patterns observed suggest that widespread, hard to quantify changes in preferences for having children, aspirations for life, and the nature of parenting are more likely behind the recent decline in US births. We conclude with a brief discussion about the societal consequences for a declining birth rate and what the United States might do about it. <br><br><br><br><br>
description: The universe of recorded births in the United States from 1980-2020 (main analysis focuses on the period from 2007-2020), among women 15-44 and within selected age and race or ethnicity groups.<br>. Smallest Geographic Unit: United States, and by State
DOI: 10.25955/19225395
title: HOPE During COVID-19 full unabridged poems

description: The full unabridged set of reflective poems for the article HOPE During COVID-19/
DOI: 10.25955/19225395.v1
title: HOPE During COVID-19 full unabridged poems

description: The full unabridged set of reflective poems for the article HOPE During COVID-19/
DOI: 10.23728/b2share.006182a6129f46f39ce2f1f7d92070e7
title: Internet-of-Things (IoT) Object Model

description: The data contains two instances of IoT-OM. Detailed explanation can be found in journal paper "Internet-of-Things (IoT) Object Model" in "Digital Twin".
DOI: 10.6084/m9.figshare.19226773
title: Supplementary Table S2. Sequencing statistics of hMe-Seal, fC-Seal, hmTOP-seq and foTOP-seq from Distribution and regulatory roles of oxidized 5-methylcytosines in DNA and RNA of the Basidiomycete fungi <i>Laccaria bicolor</i> and <i>Coprinopsis cinerea</i>

description: The formation of three oxidative DNA 5-methylcytosine (5mC) modifications (oxi-mCs), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC), by the TET/JBP family of dioxygenases, prompted intensive studies of their functional roles in mammalian cells. However, the functional interplay of these less abundant modified nucleotides in other eukaryotic lineages remains poorly understood. We carried out a systematic study of the content and distribution of oxi-mCs in DNA and RNA of the basidiomycetes <i>Laccaria bicolor</i> and <i>Coprinopsis cinerea</i> which are established models to study DNA methylation, developmental and symbiotic processes. Quantitative liquid chromatography-tandem mass spectrometry revealed persistent but uneven occurrence of 5hmC, 5fC and 5caC in DNA and RNA of the two organisms, which could be upregulated by vitamin C. 5caC in RNA (5carC) was predominantly found in non-ribosomal RNA fractions which potentially include non-coding, messenger and small RNA species. Mapping of 5hmC and 5fC genome-wide using the single CG analysis techniques hmTOP-seq and foTOP-seq pointed at involvement of oxi-mCs in regulation of gene expression and silencing of transposable elements. The implicated diverse roles of 5mC and oxi-mCs in the two fungi highlight the epigenetic importance of the latter modifications which are often neglected in standard whole-genome bisulfite analyses.
DOI: 10.6084/m9.figshare.19226773.v1
title: Supplementary Table S2. Sequencing statistics of hMe-Seal, fC-Seal, hmTOP-seq and foTOP-seq from Distribution and regulatory roles of oxidized 5-methylcytosines in DNA and RNA of the Basidiomycete fungi <i>Laccaria bicolor</i> and <i>Coprinopsis cinerea</i>

description: The formation of three oxidative DNA 5-methylcytosine (5mC) modifications (oxi-mCs), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC), by the TET/JBP family of dioxygenases, prompted intensive studies of their functional roles in mammalian cells. However, the functional interplay of these less abundant modified nucleotides in other eukaryotic lineages remains poorly understood. We carried out a systematic study of the content and distribution of oxi-mCs in DNA and RNA of the basidiomycetes <i>Laccaria bicolor</i> and <i>Coprinopsis cinerea</i> which are established models to study DNA methylation, developmental and symbiotic processes. Quantitative liquid chromatography-tandem mass spectrometry revealed persistent but uneven occurrence of 5hmC, 5fC and 5caC in DNA and RNA of the two organisms, which could be upregulated by vitamin C. 5caC in RNA (5carC) was predominantly found in non-ribosomal RNA fractions which potentially include non-coding, messenger and small RNA species. Mapping of 5hmC and 5fC genome-wide using the single CG analysis techniques hmTOP-seq and foTOP-seq pointed at involvement of oxi-mCs in regulation of gene expression and silencing of transposable elements. The implicated diverse roles of 5mC and oxi-mCs in the two fungi highlight the epigenetic importance of the latter modifications which are often neglected in standard whole-genome bisulfite analyses.
DOI: 10.6084/m9.figshare.19226897
title: Additional file 2 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 2. Statistics of the conditional hypergeometric test for the overrepresentation of GO Biological Process terms using the GOstats R package. P-values are Bonferroni-corrected p-values.
DOI: 10.6084/m9.figshare.19226900
title: Additional file 3 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 3. Statistics of the conditional hypergeometric test for the underrepresentation of GO Biological Process terms using the GOstats R package. P-values are Bonferroni-corrected p-values.
DOI: 10.6084/m9.figshare.19226903.v1
title: Additional file 4 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 4. Statistics of the hypergeometric test for the overrepresentation of PFAM domains using the GOstats R package. P-values are Bonferroni-corrected p-values.
DOI: 10.6084/m9.figshare.19226900.v1
title: Additional file 3 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 3. Statistics of the conditional hypergeometric test for the underrepresentation of GO Biological Process terms using the GOstats R package. P-values are Bonferroni-corrected p-values.
DOI: 10.6084/m9.figshare.19226903
title: Additional file 4 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 4. Statistics of the hypergeometric test for the overrepresentation of PFAM domains using the GOstats R package. P-values are Bonferroni-corrected p-values.
DOI: 10.6084/m9.figshare.19226897.v1
title: Additional file 2 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 2. Statistics of the conditional hypergeometric test for the overrepresentation of GO Biological Process terms using the GOstats R package. P-values are Bonferroni-corrected p-values.
DOI: 10.6084/m9.figshare.19226909
title: Additional file 5 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 5. Statistics of the hypergeometric test for the underrepresentation of PFAM domains using the GOstats R package. P-values are Bonferroni-corrected p-values.
DOI: 10.6084/m9.figshare.19226909.v1
title: Additional file 5 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 5. Statistics of the hypergeometric test for the underrepresentation of PFAM domains using the GOstats R package. P-values are Bonferroni-corrected p-values.
DOI: 10.6084/m9.figshare.19226915
title: Additional file 6 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 6. SVs identified as polymorphic transposable elements among the dataset of combined Illumina/Oxford Nanopore variants genotyped with Paragraph. Positions of the SVs and metadata about their best blastn match in the SoyTEdb database are described.
DOI: 10.6084/m9.figshare.19226918
title: Additional file 7 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 7. Proportion of matching nucleotides in TIR of SVs for which intact TSD sequences and matching TIR were identified with GenericRepeatFinder.
DOI: 10.6084/m9.figshare.19226924
title: Additional file 8 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 8. Multiple alignment of the Williams82 assembly version 4 reference sequence and local de novo assemblies of 7 samples at the site of a 480-bp Stowaway MITE insertion (Gm04:2,257,090). Samples OAC Petrel and Roland bear the 480-bp insertion, while Alta bears the 6-bp TACGAG insertion; other samples match the reference sequence. Asterisks mark the locations of the TSD sequences in samples OAC Petrel and Roland.
DOI: 10.6084/m9.figshare.19226918.v1
title: Additional file 7 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 7. Proportion of matching nucleotides in TIR of SVs for which intact TSD sequences and matching TIR were identified with GenericRepeatFinder.
DOI: 10.6084/m9.figshare.19226924.v1
title: Additional file 8 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 8. Multiple alignment of the Williams82 assembly version 4 reference sequence and local de novo assemblies of 7 samples at the site of a 480-bp Stowaway MITE insertion (Gm04:2,257,090). Samples OAC Petrel and Roland bear the 480-bp insertion, while Alta bears the 6-bp TACGAG insertion; other samples match the reference sequence. Asterisks mark the locations of the TSD sequences in samples OAC Petrel and Roland.
DOI: 10.6084/m9.figshare.19226915.v1
title: Additional file 6 of Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

description: Additional file 6. SVs identified as polymorphic transposable elements among the dataset of combined Illumina/Oxford Nanopore variants genotyped with Paragraph. Positions of the SVs and metadata about their best blastn match in the SoyTEdb database are described.
DOI: 10.6084/m9.figshare.19226930.v1
title: Additional file 2 of Progression patterns in monoclonal gammopathy of undetermined significance and multiple myeloma outcome: a cohort study in 42 patients

description: Additional file 2: Table S1. Comorbidities in patients who had low-risk vs. other MGUS at first pre-diagnostic blood draw. Table S2. Myeloma treatment in patients who had low-risk vs. other MGUS at first pre-diagnostic blood draw. Table S3. M spike concentrations in low-risk vs. other MGUS of IgG isotype (for better comparison) at first blood draw.
DOI: 10.6084/m9.figshare.19226930
title: Additional file 2 of Progression patterns in monoclonal gammopathy of undetermined significance and multiple myeloma outcome: a cohort study in 42 patients

description: Additional file 2: Table S1. Comorbidities in patients who had low-risk vs. other MGUS at first pre-diagnostic blood draw. Table S2. Myeloma treatment in patients who had low-risk vs. other MGUS at first pre-diagnostic blood draw. Table S3. M spike concentrations in low-risk vs. other MGUS of IgG isotype (for better comparison) at first blood draw.
DOI: 10.6084/m9.figshare.19226951.v1
title: Additional file 1 of Identification of immune-infiltrated hub genes as potential biomarkers of Moyamoya disease by bioinformatics analysis

description: Additional file 1: Table S1. Samples information.
DOI: 10.6084/m9.figshare.19226954.v1
title: Additional file 2 of Identification of immune-infiltrated hub genes as potential biomarkers of Moyamoya disease by bioinformatics analysis

description: Additional file 2: Table S2. The top 200 DEGs as shown in Fig. 2 heatmap.
DOI: 10.6084/m9.figshare.19226954
title: Additional file 2 of Identification of immune-infiltrated hub genes as potential biomarkers of Moyamoya disease by bioinformatics analysis

description: Additional file 2: Table S2. The top 200 DEGs as shown in Fig. 2 heatmap.
DOI: 10.6084/m9.figshare.19226951
title: Additional file 1 of Identification of immune-infiltrated hub genes as potential biomarkers of Moyamoya disease by bioinformatics analysis

description: Additional file 1: Table S1. Samples information.
DOI: 10.6084/m9.figshare.19226960
title: Additional file 2 of Methodological quality of systematic reviews on Chinese herbal medicine: a methodological survey

description: Additional file 2.
DOI: 10.6084/m9.figshare.19226960.v1
title: Additional file 2 of Methodological quality of systematic reviews on Chinese herbal medicine: a methodological survey

description: Additional file 2.
DOI: 10.6084/m9.figshare.19227026
title: Additional file 3 of A Japanese single-center experience of the efficacy and safety of asfotase alfa in pediatric-onset hypophosphatasia

description: Additional file 3. Japanese prevalence of the each variant with Japanese Multi Omics Reference Panel.
DOI: 10.6084/m9.figshare.19227026.v1
title: Additional file 3 of A Japanese single-center experience of the efficacy and safety of asfotase alfa in pediatric-onset hypophosphatasia

description: Additional file 3. Japanese prevalence of the each variant with Japanese Multi Omics Reference Panel.
DOI: 10.6084/m9.figshare.19227055.v1
title: Additional file 2 of Meta-analysis defines predominant shared microbial responses in various diseases and a specific inflammatory bowel disease signal

description: Additional file 2: Dataset S1. Non-specific ASVs signal (separate excel file) using initial NRMD, rarified NRMD (to 4K reads/sample), and LEFSE LDA.
DOI: 10.6084/m9.figshare.19227058
title: Additional file 3 of Meta-analysis defines predominant shared microbial responses in various diseases and a specific inflammatory bowel disease signal

description: Additional file 3: Dataset S2. Per-ASV prediction of KEGG functions (PICRUSt2) significantly higher (or lower) in disease-associated non-specific bacteria.
DOI: 10.6084/m9.figshare.19227061.v1
title: Additional file 4 of Meta-analysis defines predominant shared microbial responses in various diseases and a specific inflammatory bowel disease signal

description: Additional file 4: Dataset S3. IBD-specific ASVs.
DOI: 10.6084/m9.figshare.19227055
title: Additional file 2 of Meta-analysis defines predominant shared microbial responses in various diseases and a specific inflammatory bowel disease signal

description: Additional file 2: Dataset S1. Non-specific ASVs signal (separate excel file) using initial NRMD, rarified NRMD (to 4K reads/sample), and LEFSE LDA.
DOI: 10.6084/m9.figshare.19227058.v1
title: Additional file 3 of Meta-analysis defines predominant shared microbial responses in various diseases and a specific inflammatory bowel disease signal

description: Additional file 3: Dataset S2. Per-ASV prediction of KEGG functions (PICRUSt2) significantly higher (or lower) in disease-associated non-specific bacteria.
DOI: 10.6084/m9.figshare.19227397
title: Table S2.xlsx from Head transcriptome profiling of glossiphoniid leech (<i>Helobdella austinensis</i>) reveals clues of proboscis development

description: Cephalization refers to the evolutionary trend toward concentration of neural tissues, sensory organs, mouth and associated structures at the front end of bilaterian animals. Comprehensive studies on gene expression related to anterior formation in invertebrate models are currently lacking. In this study, we performed <i>de novo</i> transcriptional profiling, on a proboscis-bearing leech <i>Helobdella austinensis</i> to identify differentially expressed genes (DEGs) in the anterior versus other parts of the body, and in particular to find clues as to the development of the proboscis. Between the head and the body, 132 head-specific DEGs were identified, of which we chose 11 to investigate their developmental function during embryogenesis. Analysis of the spatial expression of these genes using <i>in situ</i> hybridization showed that they were characteristically expressed in the anterior region of the developing embryo, including the proboscis. Our results provide information on genes related to head formation and insights into the function of proboscis-related genes during organogenesis with the potential roles of genes not yet characterized.
DOI: 10.6084/m9.figshare.19227397.v1
title: Table S2.xlsx from Head transcriptome profiling of glossiphoniid leech (<i>Helobdella austinensis</i>) reveals clues of proboscis development

description: Cephalization refers to the evolutionary trend toward concentration of neural tissues, sensory organs, mouth and associated structures at the front end of bilaterian animals. Comprehensive studies on gene expression related to anterior formation in invertebrate models are currently lacking. In this study, we performed <i>de novo</i> transcriptional profiling, on a proboscis-bearing leech <i>Helobdella austinensis</i> to identify differentially expressed genes (DEGs) in the anterior versus other parts of the body, and in particular to find clues as to the development of the proboscis. Between the head and the body, 132 head-specific DEGs were identified, of which we chose 11 to investigate their developmental function during embryogenesis. Analysis of the spatial expression of these genes using <i>in situ</i> hybridization showed that they were characteristically expressed in the anterior region of the developing embryo, including the proboscis. Our results provide information on genes related to head formation and insights into the function of proboscis-related genes during organogenesis with the potential roles of genes not yet characterized.