cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27249507
title: <b><i>Escherichia coli α-hemolysin induces red blood cell retention in a microfluidic spleen-like device</i></b>

description: α-hemolysin (HlyA) is a major exotoxin secreted by uropathogenic <i>Escherichia coli</i> (UPEC), known for its ability to lyse red blood cells (RBCs). While its lytic effects are well characterized, the non-lytic alterations on RBCs, such as increased permeability to Ca<sup>2+</sup>, osmotic imbalance, and morphological alterations, remain less understood and may be critical in UPEC pathogenesis. This study investigates the impact of these non-lytic alterations on the rheology and mechanics of RBCs using two biomimetic microfluidic devices that model key aspects of RBCs’ circulation.In the first device, which mimics the mechanical deformation of RBCs in narrow capillaries, HlyA sublytic concentrations were found to significantly impair RBC deformability. These changes were accompanied by an increase in cytosolic Ca<sup>2+</sup> and volume expansion. In contrast, the non-acylated protoxin, ProHlyA, neither impaired the deformability of RBCs nor triggered changes in cytosolic Ca<sup>2+</sup> or cell volume.The second device, which simulates the RBCs’ filtration by the spleen’s red pulp, revealed that HlyA, but not ProHlyA, increased RBCs’ retention in small gaps resembling splenic fenestrations. The extent of RBCs’ retention was partially mitigated by blocking purinergic signaling, indicating a contribution of the HlyA-induced volume increase in this process.Our results suggest that the increase in cytosolic Ca<sup>2+</sup> elicited by HlyA impacts RBCs’ circulation by decreasing RBCs’ deformability and increasing spleen retention. However, this impairment of RBCs’ performance can function as a defense mechanism to aid in the retention of HlyA-bound RBCs, removing them from circulation, and potentially preventing vascular hemolysis.
DOI: 10.6084/m9.figshare.27249507.v1
title: <b><i>Escherichia coli α-hemolysin induces red blood cell retention in a microfluidic spleen-like device</i></b>

description: α-hemolysin (HlyA) is a major exotoxin secreted by uropathogenic <i>Escherichia coli</i> (UPEC), known for its ability to lyse red blood cells (RBCs). While its lytic effects are well characterized, the non-lytic alterations on RBCs, such as increased permeability to Ca<sup>2+</sup>, osmotic imbalance, and morphological alterations, remain less understood and may be critical in UPEC pathogenesis. This study investigates the impact of these non-lytic alterations on the rheology and mechanics of RBCs using two biomimetic microfluidic devices that model key aspects of RBCs’ circulation.In the first device, which mimics the mechanical deformation of RBCs in narrow capillaries, HlyA sublytic concentrations were found to significantly impair RBC deformability. These changes were accompanied by an increase in cytosolic Ca<sup>2+</sup> and volume expansion. In contrast, the non-acylated protoxin, ProHlyA, neither impaired the deformability of RBCs nor triggered changes in cytosolic Ca<sup>2+</sup> or cell volume.The second device, which simulates the RBCs’ filtration by the spleen’s red pulp, revealed that HlyA, but not ProHlyA, increased RBCs’ retention in small gaps resembling splenic fenestrations. The extent of RBCs’ retention was partially mitigated by blocking purinergic signaling, indicating a contribution of the HlyA-induced volume increase in this process.Our results suggest that the increase in cytosolic Ca<sup>2+</sup> elicited by HlyA impacts RBCs’ circulation by decreasing RBCs’ deformability and increasing spleen retention. However, this impairment of RBCs’ performance can function as a defense mechanism to aid in the retention of HlyA-bound RBCs, removing them from circulation, and potentially preventing vascular hemolysis.
DOI: 10.15468/dl.hhrdfw
title: Occurrence Download

description: A dataset listing the 460 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "Year 2017-2017"
 ]
}

 The dataset's 460 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016718-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ws926f
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Netherlands",
 "GadmGid is NLD.4_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Formicidae",
 "Year is 2022"
 ]
}

 The dataset includes 168 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016725-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmvst6
title: Occurrence Download

description: A dataset containing 372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.29455 40.36244,3.39789 40.36244,3.39789 42.97909,0.29455 42.97909,0.29455 40.36244))",
 "HasGeospatialIssue is false",
 "TaxonKey is Pelobates cultripes (Cuvier, 1829)",
 "Year 2004-2024"
 ]
}

 The dataset includes 372 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016726-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15050856
title: Green IT: Software Measurements of Text Editors Visual Studio Code and Pulsar

description: These sets of measurements are the results of measurements regarding the hardware utilization and electrical power consumption of the two comparable text editors Visual Studio Code and Pulsar. The raw files were uploaded as well as the results produced by OSCAR.
DOI: 10.5281/zenodo.15050857
title: Green IT: Software Measurements of Text Editors Visual Studio Code and Pulsar

description: These sets of measurements are the results of measurements regarding the hardware utilization and electrical power consumption of the two comparable text editors Visual Studio Code and Pulsar. The raw files were uploaded as well as the results produced by OSCAR.
DOI: 10.15468/dl.7susz2
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is France",
 "TaxonKey is Melitaea athalia Wachtelweizen-Scheckenfalter",
 "Year 1970-1995"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016727-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35z5rv
title: Occurrence Download

description: A dataset containing 548 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence of Butterflies in Taita-Taveta, 1912 to 2018"
 ]
}

 The dataset includes 548 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016728-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xz7wt
title: Occurrence Download

description: A dataset containing 10393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Chrysemys picta (Schneider, 1783)",
 "Year 2024-2025"
 ]
}

 The dataset includes 10393 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016729-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mqvu4
title: Occurrence Download

description: A dataset containing 1682 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Coelopa pilipes Haliday, 1838, Coelopa frigida (Fabricius, 1805))"
 ]
}

 The dataset includes 1682 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016730-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwtebu
title: Occurrence Download

description: A dataset containing 1334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Algeria, Morocco)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Macaca sylvanus (Linnaeus, 1758)",
 "Year 2000-2025"
 ]
}

 The dataset includes 1334 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016731-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3mrs2
title: Occurrence Download

description: A dataset containing 459348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Continent derived from coordinates",
 "TaxonKey is Elanus caeruleus (Desfontaines, 1789)"
 ]
}

 The dataset includes 459348 records from 645 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016716-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14845697
title: Training data for 'Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes' tutorial (Galaxy Training Material)

description: All input data used in the  tutorial including copies of data that the tutorial takes from github.
DOI: 10.5281/zenodo.14845698
title: Training data for 'Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes' tutorial (Galaxy Training Material)

description: All input data used in the  tutorial including copies of data that the tutorial takes from github.
DOI: 10.15468/dl.9fka9n
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Uruguay",
 "OccurrenceStatus is Present",
 "VerbatimScientificName is Adelphostigma occipitalis"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016737-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc26yv67
title: CCDC 2054469: Experimental Crystal Structure Determination

description: Related Article: wpp|2021|CSD Communication|||
description: Related Article: Pinpin Wang, Kai Liu, Huanqing Ma, Hao Nian, Yawen Li, Qingfang Li, Lin Cheng, Liping Cao|2021|Chem.Commun.|57|13377|doi:10.1039/D1CC05603D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2745yj
title: CCDC 2059607: Experimental Crystal Structure Determination

description: Related Article: Yisi Yang, Ying Liu, Fuxing Shen, Guangtong Hai, Baojian Liu, Zhiguo Zhang, Qiwei Yang, Qilong Ren, Zongbi Bao|2024|Inorg.Chem.|63|16807|doi:10.1021/acs.inorgchem.4c02538
description: Related Article: yisi yang|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc279ry8
title: CCDC 2064970: Experimental Crystal Structure Determination

description: Related Article: Declan McKearney, Ryan J. Roberts, Devon Mitchell, Vance E. Williams, Daniel B. Leznoff|2021|CSD Communication|||
description: Related Article: Declan McKearney, Ryan J. Roberts, Devon Mitchell, Jeffrey C. F. Cheung, Vance E. Williams, Daniel B. Leznoff|2021|Eur.J.Inorg.Chem.|2021|2773|doi:10.1002/ejic.202100378
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc279s0c
title: CCDC 2064972: Experimental Crystal Structure Determination

description: Related Article: Declan McKearney, Ryan J. Roberts, Devon Mitchell, Vance E. Williams, Daniel B. Leznoff|2021|CSD Communication|||
description: Related Article: Declan McKearney, Ryan J. Roberts, Devon Mitchell, Jeffrey C. F. Cheung, Vance E. Williams, Daniel B. Leznoff|2021|Eur.J.Inorg.Chem.|2021|2773|doi:10.1002/ejic.202100378
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27d23v
title: CCDC 2067176: Experimental Crystal Structure Determination

description: Related Article: Wensong Zou, Xuezhen Feng, Wenfei Wei, Yuanhao Zhou, Ranhao Wang, Renji Zheng, Jing Li, Siyuan Luo, Hongwei Mi, * Hong Chen*|2021|CSD Communication|||
description: Related Article: Wensong Zou, Xuezhen Feng, Wenfei Wei, Yuanhao Zhou, Ranhao Wang, Renji Zheng, Jing Li, Siyuan Luo, Hongwei Mi, Hong Chen|2021|Inorg.Chem.|60|9496|doi:10.1021/acs.inorgchem.1c00614
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28xdh3
title: CCDC 2112665: Experimental Crystal Structure Determination

description: Related Article: Hyun−Jong Lee, Ji-Hyun Cha, Duk−Young Jung|2022|J.Mol.Struct.|1275|134666|doi:10.1016/j.molstruc.2022.134666
description: Related Article: Hyun Jong Lee|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m5331
title: CCDC 2417972: Experimental Crystal Structure Determination

description: Related Article: Meng-Qi Gan, Jian-Xiang Zhu, Zhi-Chao Chen, Wei Du, Ying-Chun Chen|2025|Org.Lett.|27|1989|doi:10.1021/acs.orglett.5c00269
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m5342
title: CCDC 2417973: Experimental Crystal Structure Determination

description: Related Article: Meng-Qi Gan, Jian-Xiang Zhu, Zhi-Chao Chen, Wei Du, Ying-Chun Chen|2025|Org.Lett.|27|1989|doi:10.1021/acs.orglett.5c00269
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m5364
title: CCDC 2417975: Experimental Crystal Structure Determination

description: Related Article: Meng-Qi Gan, Jian-Xiang Zhu, Zhi-Chao Chen, Wei Du, Ying-Chun Chen|2025|Org.Lett.|27|1989|doi:10.1021/acs.orglett.5c00269
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.48597/25bc-8bzm
title: Measurement of Particle_number_concentration at Hyytiälä

description: Measurement of Particle_number_concentration at Hyytiälä
DOI: 10.25345/c57h1f02k
title: MassIVE MSV000097373 - To study the acetylation of human serum albumin (HSA) in presence and absence of Carbaryl using 2-Naphthyl Acetate (2NA) as substrate and digestion with Pepsin.
title: This is study done for academic purpose and funded by ICMR, New Delhi, India, sanctioned project titled:- To study the acetylation of human serum albumin (HSA) in presence and absence of Carbaryl using 2-Naphthyl Acetate (2NA) as substrate and digestion with Pepsin. Project File No. 5/4/1-25/2020-NCD-1. Sample processing protocol: For this, 1 ml of 1 mg/ml solution of fatty acid free human albumin (SIGMA) in 10 mM Tris HCl buffer, pH 7.38 was incubated with Carbaryl (in Ethanol)(working concentration of 5 microMolar (Organocarbamate) for 1 hour at 37 degree Celsius. Further, acetylation was done using 2NA (prepared in Acetonitrile) for 45 minutes at 37 degree Celsius. 100 microlitre of each aliquot was denatured by boiling with 10 mM dithiothreitol for 10 minutes followed by the addition of Iodoacetamide (90 mM, SIGMA) and incubation for 30 mins in the dark at 37 degree Celsius. These were then subjected to Pepsin digestion (2 microgram, Promega, MS grade, prepared in acidic water).Next, samples to be digested by pepsin were incubated for 2 hours at 37 degree Celsius. Pepsin digestion was stopped by heating samples at 95 degree Celsius. The sample clean-up with C18 resins column was performed and the aliquots were then sent for data acquisition. Data Processing protocol: The MaxQuant software (2.0.3.1) was used for the analysis of data. Under group-specific parameters acetyl K, acetyl (N-term), and (acetyl protein N-term) were selected as variable modifications whereas the Carbamidomethyl (C) was considered a fixed modification. The label-free quantification was done and the albumin sequence file (accession: P02768) was taken as a reference for understanding the analysis. For digestion, Pepsin enzyme was added to MaxQuant enzyme file. The albumin sequence file (accession: P02768) was taken as a reference for understanding the analysis. Description of the raw files is as follow. HSA_Carbaryl is Human serum albumin treated with Carbaryl and HAS_Carbaryl_2NA is Human serum Albumin treated with Carbaryl and then substrate (2NA) was added.
DOI: 10.5281/zenodo.15050838
title: Thoracic radiofrequency spectroscopy for noninvasive detection of GERD and patient data

description: This data sheet presents the spectral data of 49 patients obtained using a chest-mounted probe capable of performing radiofrequency spectroscopy within the 40 Hz to 1 MHz range, with tomographic capability to reach the esophagus. The spectra include measurements from patients with an empty esophagus, as well as those taken while ingesting water, orange juice, and 1% (w/w) brine. Additionally, comprehensive patient data are provided, including body mass, height, protein content, fat percentage, visceral fat levels, age, presence of digestive issues, smoking status, and GERD diagnosis. This dataset enables a thorough analysis of esophageal dielectric properties and their correlation with physiological and lifestyle factors.
DOI: 10.5281/zenodo.15050837
title: Thoracic radiofrequency spectroscopy for noninvasive detection of GERD and patient data

description: This data sheet presents the spectral data of 49 patients obtained using a chest-mounted probe capable of performing radiofrequency spectroscopy within the 40 Hz to 1 MHz range, with tomographic capability to reach the esophagus. The spectra include measurements from patients with an empty esophagus, as well as those taken while ingesting water, orange juice, and 1% (w/w) brine. Additionally, comprehensive patient data are provided, including body mass, height, protein content, fat percentage, visceral fat levels, age, presence of digestive issues, smoking status, and GERD diagnosis. This dataset enables a thorough analysis of esophageal dielectric properties and their correlation with physiological and lifestyle factors.
DOI: 10.5281/zenodo.15050887
title: Pelagic normalized biomass size spectra for mesozooplankton and micronekton in the Benguela Upwelling System, 2019

description: Pelagic normalized biomass size spectra for mesozooplankton and micronekton for the Benguela Upwelling System, 2019

 

Data provided by Tim Dudeck1 and Heino O. Fock2

 

1Leibniz Centre for Tropical Marine Research, 28359 Bremen, Germany

2Thünen Institute of Sea Fisheries, 27572 Bremerhaven, Germany

 

Contents

1 Excel file with two data sheets, 'mesozooplankton' and 'micronekton_macro-zooplankton' composite, containing normalized biomass size spectrum data, providing additional data for "Pelagic food-web structure and micronekton trophic transfer efficiency in the northern and southern Benguela Upwelling Systems" (Duncan et al., subm. 2025).

Data are provided for 2 depth strata (0-500 m water depth, > 500 m water depth) for the two subregions northern and southern Benguela Upwelling System.
DOI: 10.5281/zenodo.15050888
title: Pelagic normalized biomass size spectra for mesozooplankton and micronekton in the Benguela Upwelling System, 2019

description: Pelagic normalized biomass size spectra for mesozooplankton and micronekton for the Benguela Upwelling System, 2019

 

Data provided by Tim Dudeck1 and Heino O. Fock2

 

1Leibniz Centre for Tropical Marine Research, 28359 Bremen, Germany

2Thünen Institute of Sea Fisheries, 27572 Bremerhaven, Germany

 

Contents

1 Excel file with two data sheets, 'mesozooplankton' and 'micronekton_macro-zooplankton' composite, containing normalized biomass size spectrum data, providing additional data for "Pelagic food-web structure and micronekton trophic transfer efficiency in the northern and southern Benguela Upwelling Systems" (Duncan et al., subm. 2025).

Data are provided for 2 depth strata (0-500 m water depth, > 500 m water depth) for the two subregions northern and southern Benguela Upwelling System.
DOI: 10.15468/dl.32uvdx
title: Occurrence Download

description: A dataset containing 19448 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is 2009-2020台灣蝴蝶普查"
 ]
}

 The dataset includes 19448 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016738-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.