cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4zsja6
title: Occurrence Download

description: A dataset containing 226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Calamagrostis epigeios Steud.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 226 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007329-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5736mf27
title: MassIVE MSV000098034 - The SHFV nsp2 and nucleocapsid proteins recruit G3BP1 to sites of viral replication but stress 1 granules are not induced by the infection
title: The SHFV nsp2 and nucleocapsid proteins recruit G3BP1 to sites of viral replication but stress 1 granules are not induced by the infection.
DOI: 10.5281/zenodo.16910458
title: Data Availability – Enhancing Success Drivers for Banking System Migration using Analytic Hierarchy Process (AHP)

description: This dataset provides supporting materials for the study “Enhancing Success Drivers for Banking System Migration using Analytic Hierarchy Process (AHP)”. It includes the AHP questionnaire template used for data collection, the aggregated pairwise comparison matrices and prioritization results derived from expert evaluations, and a hierarchy diagram illustrating the research framework. Raw individual responses and sensitive banking information are not disclosed due to confidentiality restrictions; however, the shared files are sufficient to replicate the methodology, validate the analysis, and support future research on critical success drivers in system migration projects.
DOI: 10.5281/zenodo.16910459
title: Data Availability – Enhancing Success Drivers for Banking System Migration using Analytic Hierarchy Process (AHP)

description: This dataset provides supporting materials for the study “Enhancing Success Drivers for Banking System Migration using Analytic Hierarchy Process (AHP)”. It includes the AHP questionnaire template used for data collection, the aggregated pairwise comparison matrices and prioritization results derived from expert evaluations, and a hierarchy diagram illustrating the research framework. Raw individual responses and sensitive banking information are not disclosed due to confidentiality restrictions; however, the shared files are sufficient to replicate the methodology, validate the analysis, and support future research on critical success drivers in system migration projects.
DOI: 10.5061/dryad.np5hqbzw9
title: An improved earthquake catalog during the 2018 Kilauea eruption from combined onshore and offshore seismic arrays

description: The Island of Hawai'i was formed by repeated eruptions of basalts at
 an oceanic hotspot. Kilauea, the youngest among the subaerial volcanoes of
 the island, erupted intensely in 2018. The eruption provided an
 opportunity to look into the mechanisms that operate at the volcano and
 associated earthquake activities, as it was recorded simultaneously, for
 the first time, by onshore and offshore seismometers. We used most of the
 publicly available seismic data during the eruption period, including
 temporary arrays, to build a more complete earthquake catalog during the
 eruption than that provided by the Hawaiian Volcano Observatory (HVO). We
 used a short-time-average/long-time-average (STA/LTA) method to identify
 potential earthquakes. The detections were associated into events and
 automatically picked with P- and S-wave arrivals, which were used to
 locate the events in a three-dimensional velocity model. After
 re-examining these earthquake events, their coda/duration magnitudes were
 determined. The resulting half-year catalog contains 375,736 events with
 one of the highest daily earthquake numbers ever reported (6,128 on June
 21st, 2018). A great number of events were recorded during the caldera
 collapses, from its beginning untill its rapid ending. The catalog also
 contains abundant events near the Pu'u'o'o vent and in the
 lower East Rift Zone, where an increase of seismicity in the mid-July and
 August indicated a step-up in magma intrusion after the eruption.
DOI: 10.5061/dryad.msbcc2g19
title: Failure and deformation characteristics of shale under true triaxial stress loading and unloading under water retention and seepage

description: A multifunctional true triaxial fluid-structure coupling system was used
 to conduct water retention and seepage tests of shale under true triaxial
 loading and unloading stress paths. The stress-strain evolution law of
 shale specimens under different experimental conditions was obtained, and
 the corresponding deformation and strength law was analyzed. The evolution
 law and failure characteristics of cracks in shale were obtained by CT
 scanning images before and after the experiment. The results show that
 under the condition of water retention, the volumetric strain of shale
 specimen increases first, then decreases and finally continues to increase
 with the increase of deviational stress, indicating that the volumetric
 change has experienced a process of compaction-expansion-compacting. The
 partial stress-maximum horizontal strain curve of the sample increases
 first and then decreases, while the deformation of the sample in the
 direction of intermediate principal stress shows the characteristics of
 repeated compression and expansion. In the seepage test, the permeability
 - maximum horizontal strain curve can be divided into two parts before and
 after fracture according to the deviant stress - maximum horizontal strain
 curve. Before fracture, the compression velocity of the specimen in the
 loading direction exceeds the expansion velocity in the unloading
 direction, resulting in a decrease in volume and a decrease in
 permeability. With the increase of deviatoric stress, cracks occur inside
 the particles and continue to spread from the tip until the cracks break
 through the shale specimen. In this process, the pore fissure area
 increases and the permeability of the sample increases rapidly. In terms
 of fracture evolution, for the water-retaining test, dense tensile and
 shear cracks appear on the failure plane perpendicular to the direction of
 maximum and minimum principal stress, and complex shear fracture network
 appears on the failure plane perpendicular to the direction of
 intermediate principal stress. For the seepage test, heavy shear failure
 occurs throughout the original fracture of the sample. With the increase
 of the penetration depth, the crack shape on the failure surface
 perpendicular to the direction of intermediate principal stress gradually
 changes from single type to complex type.
DOI: 10.5061/dryad.3tx95x6jc
title: Raw data for: Plastic responses of males and females interact to determine mating behaviour

description: Individuals can respond plastically to variation in their social
 environment. However, each sex may respond to different cues and
 contrasting aspects of competition. Theory suggests that the plastic
 phenotype expressed by one sex can influence evolutionary dynamics in the
 other, and that plasticity simultaneously expressed by both sexes can
 exert sex-specific effects on fitness. However, data are needed to test
 this theory base. Here, we examined whether the simultaneous expression of
 adaptive plasticity by both sexes of Drosophila melanogaster fruit flies
 in response to their respective social environments interacts to determine
 the value of key reproductive traits (mating latency, duration and
 fecundity). To vary social environments, males were kept alone, or with
 same sex rivals, and females were kept alone, in same-sex, or mixed-sex
 groups. Matings were then conducted between individuals from all of these
 5 social treatments in all combinations, and the resulting reproductive
 traits measured in both ‘choice’ and ‘no choice’ assays. Mating latency
 was determined by an interaction between the plastic responses of both
 sexes to their social environments. Interestingly, the mating latency
 response occurred in opposing directions in the different assays. In
 females exposed to same-sex social treatments, mating latency was more
 rapid with rival treatment males in the choice assays, but slower with
 those same males in no choice assays. In contrast, mating duration was
 determined purely by responses of males to their social environments, and
 fecundity purely by responses of females. Collectively, the results show
 that plastic responses represent an important and novel facet of sexual
 interactions.
description: See main MS for detailed descriptions of data collection. The
 file here contains the raw data that has not been processed.
description: A read me tab has been appended to the data file.
DOI: 10.5061/dryad.2v6wwpzr3
title: SARS-CoV-2 nucleocapsid and RT-PCR results

description: We collected blood samples from patients admitted to the hospital during a
 period with RT-PCR based-screening of patients for Severe Acute
 Respiratory Syndrome Cornavirus-2 (SARS-CoV-2). Retrospectively the
 SARS-CoV-2 nucleocapsid protein (NP) plasma concentrations were measured
 with an ELISA method and used for an initial time course study to find the
 optimal time-point for sampling blood. Next, we estimated the diagnostic
 accuracy i.e. the clinical sensitivity and specificity at different plasma
 NP cut-off concentrations. The time course study revealed profiles with
 rapid or more slow declines in NP titers after the RT-PCR result.
 Nevertheless, in the time interval 0 – 7 days after the RT-PCR result, the
 NP concentration was always above the level of detection at 1.66 pg/ml
 suggesting that the diagnosis could be established in the time interval of
 0 - 7 days. The median time gap between the plasma NP and RT-PCR results
 was 0.0 days (n = 1957, interval: -26 to + 21 days). Reducing the time gap
 to seven days, the clinical sensitivity was 90.0% (n= 60, 95% CI, 82.4% to
 97.6%) at a specificity of 95.9% (n=1876, 95% CI, 95.0% to 96.8%). Curve
 analysis by receiver operation characteristics identified a cut-off
 concentration of 1.87 pg/mL NP as optimal resulting in a positive
 predictive value of 41.2%, a negative predictive value of 99.7% and a
 prevalence of 3.1%. In conclusion, the NP method is acceptable for making
 the laboratory diagnosis of SARS-CoV-2, and an intended use of plasma NP
 as a prospective nosocomial screening method is considered feasible.
description: In the period from 1st. - 30th
 November 2021 oro- and nasopharyngeal swab samples were obtained from
 patients admitted to the North Zealand Hospital, Hillerød, Denmark. To
 diagnose SARS-CoV-2 the samples were analyzed for the presence or absence
 of viral RNA with an RT-qPCR method. Routine blood
 samples were sent to the local Department of Clinical Biochemistry. After
 all the requested biochemical analyses were carried out, the centrifuged
 plasma samples were kept for one day at 4oC. The plasma samples were
 frozen at -20oC and later thawed batch-wise for NP analysis. Patients with
 paired results (&lt;7 days apart) from RT-PCR - and NP analysis,
 respectively, were used to determine the diagnostic accuracy of the NP
 method.
DOI: 10.5061/dryad.j0zpc86h9
title: Molecular tracking and prevalence of the red colour morph restricted to a harvested leopard population in South Africa

description: The red leopard (Panthera pardus) colour morph is a colour variant that
 occurs only in South Africa, where it is confined to the Central Bushveld
 bioregion. Red leopards have been spreading over the past 40 years, which
 raises the speculation that the prevalence of this phenotype is related to
 low dispersal of young individuals owing to high off-take in the region.
 Intensive selective hunting tends to remove large resident males from the
 breeding population, which gives young males the chance to mate with
 resident females that are more likely to be their relatives, eventually
 increasing the frequency of rare genetic variants. To investigate the
 genetic mechanisms underlying the red coat colour morph in leopards, and
 whether its prevalence in South Africa relates to an increase in genetic
 relatedness in the population, we sequenced exons of six colour coat
 associated genes and 20 microsatellite loci in twenty wild-type and four
 red leopards. The results were combined with demographic data available
 from our study sites. We found that red leopards own a haplotype in
 homozygosity identified by one non-synonymous SNP and a 1 bp deletion that
 causes a frameshift in the Tyrosinase Related Protein 1 (TYRP1), a gene
 known to be involved in the biosynthesis of melanin. Microsatellite
 analyses indicate clear signs of a population bottleneck and a relatedness
 of 0.11 among all pairwise relationships, eventually supporting our
 hypothesis that a rare colour morph in the wild has increased its local
 frequency due to low natal dispersal. This was backed by a high
 human-induced mortality rate (40%).
description: Tissue samples were opportunistically obtained from leopards that
 were found dead in the field, and hair samples were collected when animals
 were immobilized for relocation or radio-collaring. DNA was isolated using
 the NucleoSpin Tissue kit applying the support protocol for tissue
 samples. We selected 20 nuclear microsatellite loci that are known to be
 polymorphic in South African leopards. Primers were 5’-labelled with
 6-FAM, HEX, Tamra or TET fluorescent dyes. Polymerase Chain Reactions
 (PCRs) were performed in 10 µL volumes containing 3 µL (H20), 5 µL (1x)
 Platinum Multiplex PCR Master Mix (Applied Biosystems), 0.5 µL (25 nM) of
 each primer, and 1 µL (~ 20 ng) genomic DNA. Amplifications were carried
 out in a Multigene Optimax Thermal Cycler (Labnet) with the following PCR
 cycling protocol: 3 min of initial activation at 93°C, 10 annealing cycles
 consisting of 94°C for 15 s, 52-56°C for 15 s and 72°C for 30 s, 20
 annealing cycles consisting of 89°C for 15 s, 52-56°C for 15 s, 72°C for
 30 s, and a final elongation step of 72°C for 30 min.
description: For three-digit microsatellite scores, please contact lauratensen@uni-koblenz.de
DOI: 10.5061/dryad.kprr4xh6q
title: Earthworms increase the potential for enzymatic bio-activation of biochars made from co-pyrolyzing animal manures and plastic wastes

description: We assessed the enzymatic activation of four different biochars produced
 from pyrolyzing swine manure and poultry litter, and by co-pyrolyzing
 these livestock residues with agricultural spent mulch plastic film wastes
 (plastichars). Enzymatic activation consisted of incubating biochars in
 soil inoculated with earthworms (Lumbricus terrestris), which acted as
 biological vectors to facilitate retention of extracellular enzymes onto
 biochar surface. The activity of carboxylesterase ‒a pesticide-detoxifying
 enzyme‒ was measured in non-bioturbed soils (reference), linings of the
 burrows created by earthworms, casts (feces) and biochar particles
 recovered from the soil.
description: The data were collected in the laboratory.
DOI: 10.5061/dryad.2547d7wsp
title: Localized carry-over effects of pond drying on survival, growth, and pathogen defenses in amphibians

description: Climate change is increasing variability in precipitation patterns in many
 parts of the globe. Unpredictable changes in water availability can be
 particularly challenging for organisms that rely on precipitation-fed
 water sources for completing their life cycle, such as many amphibian
 species. Although developmental plasticity can mitigate the impacts of
 changing environments for some species, this strategy can come at a cost
 to other fitness-linked traits, such as immune function. We investigated
 localized variation in the capacity to respond to pond drying and
 evaluated whether developmental responses induced carry-over effects in
 disease susceptibility in three leopard frog species
 (Rana [Lithobates] pipiens and R.
 sphenocephala; two populations each, and one population of R.
 chiricahuensis). Using mesocosms located near the site of collection
 (&lt;15 km away) in five regions spanning a latitudinal gradient, we
 raised tadpoles under simulated fast-drying, slow-drying, or constant
 water levels. After metamorphosis, we characterized several aspects of the
 skin microbiome, immune function, and response to exposure to the fungal
 pathogen Batrachochytrium dendrobatidis (Bd). Note that
 for R. chiricahuensis, the only carry-over effect
 measured was response to Bd exposure, for which we
 observed no effects of pond drying. We found that developmental plasticity
 in response to drying was rare, except in the southernmost population
 of R. sphenocephala. In this location, tadpoles responded by
 accelerating development, and frogs with shorter larval periods developed
 more severe infections
 following Bd exposure post-metamorphosis,
 suggesting a trade-off between surviving pond drying and pathogen defense
 investment. In the three other locations, a lack of accelerated
 metamorphosis in drying treatments was accompanied by increased mortality,
 decreased anti-Bd function of the microbiome, and/or
 greater Bd infection after exposure. Overall, results
 suggest that faster drying conditions will likely have negative impacts on
 amphibians with long larval periods, both directly and indirectly via
 carry-over effects. Because effects of drying exposure were not uniform
 within a species, our findings suggest local responses may not be
 generalizable to other regions of the range. These multifaceted effects of
 climate change on pathogen defenses are increasingly relevant as emerging
 infectious diseases threaten global biodiversity.
description: Mesocosm and laboratory experiments.
description: Please contact corresponding author.
DOI: 10.5061/dryad.cjsxksn7t
title: Light environment interacts with visual displays in a species-specific manner in multimodal signaling wolf spiders

description: Light availability is highly variable, yet predictable, over various
 timescales and the light environment is expected to play an important role
 in the evolution of visual signals. Courtship displays within the wolf
 spider genus Schizocosa always involve the use of substrate borne
 vibrations, however, there is substantial variation between species in the
 use of visual displays. We assessed the impact of light intensity on the
 courtship of four species of Schizocosa that vary in their use of visual
 signals during courtship. To examine the effects of the light environment
 on mating success and courtship effort in each species, we ran behavioral
 trials at three light intensities (bright, dim and dark). We also examined
 each species’ circadian activity patterns. We found multiple effects of
 the light environment and these varied between species. Circadian activity
 patterns also differed between species and sexes. Our results suggest that
 dim-light might favor more conspicuous visual displays, while less
 conspicuous displays might be favored in bright light conditions.
 Additionally, we found evidence for light-dependent changes in selection
 on male traits, illustrating that short-term changes in light intensity
 have the potential for strong effects on the dynamics of sexual selection.
DOI: 10.5061/dryad.g4f4qrfsn
title: Data from: Classification and mapping of low-statured 'shrubland' cover types in post-agricultural landscapes of the US Northeast

description: Novel plant communities reshape landscapes and pose challenges for land
 cover classification and mapping that can constrain research and
 stewardship efforts. In the US Northeast, emergence of low-statured woody
 vegetation, or 'shrublands', instead of secondary forests in
 post-agricultural landscapes is well-documented by field studies, but
 poorly understood from a landscape perspective, which limits the ability
 to systematically study and manage these lands. To address gaps in
 classification/mapping of low-statured cover types where they have been
 historically rare, we developed models to predict 'shrubland'
 distributions at 30m resolution across New York State (NYS), using machine
 learning and model ensembling techniques to integrate remote sensing of
 structural (airborne LIDAR) and optical (satellite imagery) properties of
 vegetation cover. We first classified a 1m canopy height model (CHM),
 derived from a "patchwork" of available LIDAR coverages, to
 define shrubland presence/absence. Next, these non-contiguous maps were
 used to train a model ensemble based on temporally-segmented imagery to
 predict 'shrubland' probability for the entire study landscape
 (NYS). Approximately 2.5% of the CHM coverage area was classified as
 shrubland. Models using Landsat predictors trained on the classified CHM
 were effective at identifying shrubland (test set AUC=0.893, real-world
 AUC=0.904), in discriminating between shrub/young forest and other cover
 classes, and produced qualitatively sensible maps, even when extending
 beyond the original training data. After ground-truthing, we expect these
 shrubland maps and models will have many research and stewardship
 applications including wildlife conservation, invasive species mitigation
 and natural climate solutions. Overall our results compared favorably in
 terms of accuracy with existing LULC products, suggesting that
 incorporation of airborne LiDAR, even from a discontinuous patchwork of
 coverages, can improve LULC classification of historically rare but
 increasingly prevalent 'shrubland' habitats across broader
 areas.