cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.xpnvx0kd7
title: Fish fluoxetine reaction time

description: Fluoxetine is an antidepressant medicine causing relaxation and mood
 improvement in people, with silencing certain personality traits in some
 cases. The question arise if such phenomena can be observed in non-target
 organisms like fish. Fluoxetine affects fishes behaviour, however, it is
 not known if the medicine affects its “personality”. This study aimed to
 evaluate the reaction of the invasive Neogobius fluviatilis and native
 Gobio gobio individuals to fluoxetine at environmental concentration of
 360 ng L-1. We prepared three variants of the experiments: (i) behavioural
 trials with unexposed fishes; (ii) behavioural trials with the same fishes
 after 21-day of fluoxetine exposure; (iii) behavioural trials with the
 same fishes after 21-day depuration period i.e. without fluoxetine. The
 fishes reaction time (RT) i.e. difference in time spent on reaching food
 with and without the necessity of overcoming the obstacle was analysed.
 Additionally, the personality: bold or shy, traits of each fish
 individual, was assigned. The results indicated that environmental
 concentrations of the antidepressant influenced RT. The average RT of the
 fishes cultured with fluoxetine was by 7 min shorter in comparison to the
 non- exposed control. Share of individuals exposed to fluoxetine assigned
 as bold raised to 71.4% in comparison to 46.4% in non-exposed control.
 This sheds new light on wild fishes behaviour caught from freshwater.
 Environmental concentrations of the antidepressant influenced the time of
 fishes reaction and share individuals assigned as bold. Moreover, 21 day
 recovery lasting might be not enough to get fluoxetine effect on fishes.
DOI: 10.82294/dvnozaj1n
title: Datos consolidados de eje medular. Territorio: Norte de Santander. Eje medular: Agenciamiento. Sector: Cultura, Educación, Total. Año: 2025

description: Datos consolidados de las observaciones semiestructuradas sobre el eje medular de agenciamiento, realizadas en el departamento de Norte de Santander. Este dataset reúne los archivos correspondientes a los educadores artísticos del sector Educación y del sector Cultura, así como un archivo consolidado que integra la información de ambos sectores.
DOI: 10.5061/dryad.pc866t1mq
title: Data from: One million years of diversity shifts in amphibians and reptiles in a Mediterranean landscape: resilience rules the Quaternary.

description: By contrast with the strain undergone by amphibian and reptile populations
 today, broadly documented in the scientific literature, the Quaternary
 fossil record of these groups is very conservative. In order to establish
 the non-human-induced effect of climate change on herpetofaunal diversity,
 we collect data from Pleistocene sites of the Sierra de Atapuerca complex
 (Burgos, Spain), which records the last few million years of changes.
 Diversity of herpetofauna communities present in this period was measured
 in terms of richness and evenness indexes. Both indexes were performed
 independently for amphibians and reptiles and also for the whole
 population. Finally, the relation with the climatic parameters was
 analysed, with OLS regression models. The highest diversity (richness and
 evenness (1-D)) occurred in periods considered analogues of the current
 interglacial, whereas minimum diversity values were reached during periods
 when conditions were harsher. In all cases, the diversity values were
 always restored subsequently, pointing to great resilience. Temperature
 proves to be the most influential climatic factor. Accordingly, amphibians
 and reptiles have been able to overcome previous climatic changes
 successfully. By contrast, the effects of anthropization have generated an
 uncommon loss of diversity, the like of which has not been seen in the
 last few million years.
DOI: 10.5061/dryad.573n5tb5w
title: Data from: Niche differentiation of bacterial versus archaeal soil nitrifiers induced by ammonium inhibition along a management gradient

description: Soil nitrification, mediated mainly by ammonia oxidizing archaea (AOA) and
 bacteria (AOB), converts ammonium (NH4+) to nitrite (NO2−) and thence
 nitrate (NO3−). To better understand ecological differences between AOA
 and AOB, we investigated the nitrification kinetics of AOA and AOB under
 eight replicated cropped and unmanaged ecosystems (including two
 fertilized natural systems) along a long-term management intensity
 gradient in the upper U.S. Midwest. For five of eight ecosystems, AOB but
 not AOA exhibited Haldane kinetics (inhibited by high NH4+ additions),
 especially in perennial and successional systems. In contrast, AOA
 predominantly exhibited Michaelis-Menten kinetics, suggesting greater
 resistance to high nitrogen inputs than AOB. These responses suggest the
 potential for NH4+-induced niche differentiation between AOA and AOB.
 Additionally, long-term fertilization significantly enhanced maximum
 nitrification rates (Vmax) in the early successional systems for both AOA
 and AOB, but not in the deciduous forest systems. This was likely due to
 pH suppression of nitrification in the acidic forest soils, corroborated
 by a positive correlation of Vmax with soil pH but not with amoA gene
 abundance. Results also demonstrated that soil nitrification potentials
 were relatively stable, as there were no seasonal differences. Overall,
 results suggest that (1) NH4+ inhibition of AOB but not AOA could be
 another factor contributing to niche differentiation between AOA and AOB
 in soil, and (2) nitrification by both AOA and AOB can be significantly
 promoted by long-term nitrogen inputs.
description: See ReadMe file.
DOI: 10.5061/dryad.qfttdz0fr
title: Dominance behaviour and division of labour in the tropical primitively eusocial wasp Ropalidia cyathiformis

description: Primitively eusocial insects exhibit reproductive division of labour such
 that one or a small number of individuals monopolize reproduction while
 the remaining function as non-reproductive workers. They also exhibit
 non-reproductive division of labour such that some workers primarily
 perform the extra-nidal tasks of foraging, while others primarily perform
 the intra-nidal tasks of feeding larvae, building the nest and other nest
 maintenance activities. In some species queens regulate both reproductive
 as well as non-reproductive division of labour by means of their dominance
 behavior toward the workers. Here we show that in the primitively eusocial
 species R. cyathiformis, (1) the queen shows significantly more aggression
 towards the potential queen (PQ) than to the rest of the workers; (2) the
 PQ shows significantly more aggression towards the workers than they show
 to each other; (3) the activities of the workers such as bringing food and
 feeding the larvae continue unabated in the absence of the queen; (4) the
 amount of dominance received by a worker does not predict her rate of
 foraging; (5) there is a positive correlation between workers’ rates of
 bringing food and the rates at which they themselves feed the larvae. We
 suggest that while queen (along with PQ) regulates reproductive division
 of labour, dominance behavior is not used to regulate the non-reproductive
 activities of the workers such as bringing food and feeding the larvae;
 these are self-regulated by individual workers by themselves.
description: These are the behavioural data collected as part of two studies.
 The first sheet of the excel file provides the frequency of bring food
 behaviour and the amount of dominance received for each wasp belonging to
 different colonies or nests. The second sheet shows the frequency of bring
 food behaviour and feed larva behaviour by each individual wasp belonging
 to different colonies or nests. The third sheet shows the total amount of
 bring food behaviour and feed larva behaviour that was exhibited by the
 different colonies when the queen was present (QR) and when the queen was
 absent (QL). The fourth and final sheet shows the dominance behaviour
 shown and received by the queen (Q), potential queen (PQ) and workers (W).
 It also shows the per-capita dominance behaviour shown by each of these
 types of individuals.
DOI: 10.5061/dryad.rn8pk0p84
title: Evaluating a trait-based approach to compare natural enemy and pest communities in agroforestry versus arable systems

description: Diversified farming systems, for example those that incorporate
 agroforestry elements, have been proposed as a solution that could
 maintain and improve multiple ecosystem services. However, habitat
 diversification in and around arable fields has complex and inconsistent
 effects on invertebrate crop pests and their natural enemies. This hinders
 the development of policy recommendations to promote the adoption of such
 management strategies for the provision of natural pest control services.
 Here, for the first time we conducted a trait-based approach to
 investigate the effect of farming system on plant, invertebrate herbivore
 and invertebrate natural enemy communities. We then evaluated this
 approach by comparing the results to those generated using a traditional
 taxonomic approach. At each of three working farms, we sampled within an
 agroforestry field (a diverse farming system comprising alleys of arable
 crops separated by tree rows), and within a paired non-diversified area of
 the farm (arable control field). Each of 96 sample points was sampled
 between eight and ten times, yielding 393,318 invertebrate specimens from
 344 taxonomic groups. Diet specialization or granivory, lack of a pupal
 stage, and wing traits in invertebrates, along with late flowering, short
 flowering duration, creeping habit and perenniality in plants, were traits
 more strongly associated with agroforestry crop alleys than the arable
 control fields. We hypothesize that this is a result of reduced habitat
 disturbance and increased habitat complexity in the agroforestry system.
 Taxonomic richness and diversity were higher in the agroforestry crop
 alleys compared to the arable control fields, but these effects were
 stronger at lower trophic levels. However, functional trait diversity of
 natural enemies was significantly higher in the agroforestry crop alleys
 than the arable control fields, suggesting an improved level of
 biocontrol, which was not detected by traditional diversity metrics. Of
 eight key pest taxa, three were significantly suppressed in the
 agroforestry system, whilst two were more abundant, compared to the arable
 control fields. Trait-based approaches can provide a better mechanistic
 understanding of farming system effects on pests and their natural
 enemies, therefore we recommend their application and testing in future
 studies of diversified farming systems.
DOI: 10.5061/dryad.5tb2rbp32
title: Learned predators enhance biological control via organizational upward and trophic top‐down cascades

description: Learning is a behavioral change based on memory of previous experiences
 and a ubiquitous phenomenon in animals. Learning effects are commonly life
 stage- and age-specific. In many animals, early life experiences lead to
 pervasive and persistent behavioral changes. There is broad consensus that
 learning has far-reaching implications to biological control. Proximate
 and ultimate factors of individual learning by parasitoids and true
 predators are relatively well understood, yet the consequences of learning
 to higher organizational levels, populations and communities, and top-down
 trophic cascades are unexplored. We addressed this issue using a
 tri-trophic system consisting of predatory mites Amblyseius swirskii,
 Western flower thrips Frankliniella occidentalis and whole common bean
 plants, Phaseolus vulgaris. F. occidentalis are notorious horticultural
 pests that are difficult to control. Therefore, practitioners have much to
 gain by optimizing biological control of thrips. Previous studies have
 shown that early life experience of thrips by A. swirskii improves
 foraging on thrips later in life due to decreased prey recognition times
 and increased predation rates, together enhancing predator fecundity.
 Here, we hypothesized that early learning by A. swirskii enhances
 biological control of thrips via immediate and cascading effects. We
 predicted that release of thrips-experienced predators enhances predator
 population growth and thrips suppression and reduces plant damage as
 compared to release of thrips-naïve predators. The behavioral changes
 brought about by early learning cascaded up to the population and
 community levels. Thrips-experienced predators caused favorable immediate
 and cascading effects that could not be compensated for in populations
 founded by thrips-naïve predators. Populations founded by
 thrips-experienced predators grew faster, reached higher abundances, were
 more efficacious in suppressing an emerging thrips population and kept
 plant damage at lower levels than populations founded by thrips-naïve
 predators. Plant fecundity correlated negatively with thrips abundance and
 positively with predatory mite abundance. Improved biological control was
 mainly due to thrips-experienced founders providing for a head-start in
 predator population growth and thrips suppression. Synthesis and
 applications: Our study suggests that learned natural enemies have high
 potential to optimize augmentative biological control on a larger scale
 due to favorably modulating organizational upward and trophic top-down
 cascades.
description: Data were collected by sampling one leaf per experimental unit
 per sampling date and count the number of mites and thrips per leaf and
 the proportional leaf damage caused by thrips.
description: This is counts per experimental unit except for damage, which is
 proprtional data. FO is <em>F.
 occidentalis</em> AS is <em>A.
 swirskii</em>
DOI: 10.5061/dryad.q83bk3jgm
title: Data from: Vertical sexual habitat segregation in a wintering migratory songbird

description: Sexual habitat segregation during the wintering period is a widespread
 phenomenon and has important implications for the ecology and conservation
 of migratory birds. We studied Black-and-white Warblers (Mniotilta varia)
 wintering in second-growth scrub and old-growth mangrove forest in Jamaica
 to quantify sexual habitat segregation and explore whether patterns of
 habitat occupation have consequences on physical condition. We then used
 this information along with a body size analysis and simulated territorial
 intrusions to assess whether behavioral dominance or habitat
 specialization was responsible for habitat segregation. Based on
 standardized capture data, we found that females were more abundant than
 males in both scrub and mangrove forests. Foraging observations, however,
 suggested vertical segregation within each habitat, with females foraging
 primarily near the ground and males in the mid-canopy and canopy,
 indicating that our sex ratio estimates may be biased. Using 2 measures of
 body condition, we show that males were in better body condition than
 females, regardless of habitat. We found that males were on average
 slightly larger than females, and home range analysis and simulated
 territorial intrusions indicated that males were more territorial than
 females. We argue that the observed vertical sexual habitat segregation is
 likely caused by behavioral dominance rather than habitat specialization.
 Winter body condition is known to carry-over to affect migration timing,
 reproductive success, and annual survival in other songbirds, and
 therefore sexual habitat segregation may have important implications for
 year-round population dynamics in Black-and-white Warblers.
description: All data were collected in the field as described in the methods
 section of the paper.
description: See Cooper Read Me.pdf
DOI: 10.5061/dryad.8sf7m0ckn
title: Data from: Structure, gene order, and nucleotide composition of mitochondrial genomes in parasitic lice from Amblycera

description: Parasitic lice have unique mitochondrial (mt) genomes characterized by
 rearranged gene orders, variable genome structures, and less AT content
 compared to most other insects. However, relatively little is known about
 the mt genomes of Amblycera, the suborder sister to all other parasitic
 lice. Comparing among nine different genera (including representative of
 all seven families), we show that Amblycera have variable and highly
 rearranged mt genomes. Some genera have fragmented genomes that vary
 considerably in length, whereas others have a single mt chromosome.
 Notably, these genomes are more AT-biased than most other lice. We also
 recover genus-level phylogenetic relationships among Amblycera that are
 consistent with those reported from large nuclear datasets, indicating
 that mt sequences are reliable for reconstructing evolutionary
 relationships in Amblycera. However, gene order data cannot reliably
 recover these same relationships. Overall, our results suggest that the mt
 genomes of lice, already know to be distinctive, are even more variable
 than previously thought.
description: We obtained these data from mitochondrial genomes of lice in the
 suborder Amblycera that we assembled from paired-end Illumina sequence
 reads. We assembled the genomes using a combination of <em>de
 novo </em>(aTRAM, SPAdes) and mapping (MITObim) approaches. We
 annotated the resulting assemblies using MITOS2 and by comparing to
 published louse mitochondrial genomes. Following annotation, we used
 protein coding genes and ribosomal RNA genes to estimate phylogenetic
 relationships among the suborder Amblycera. For these analyses, we
 included data from previously published mitochondrial genomes of lice to
 serve as outgroups and to increase our representation of Amblycera. We
 used both maximum likelihood and Bayesian phylogenetic approaches on
 different subsets of the sequence alignments (all codon positions, 1st and
 2nd codon positions only, <em>cox1</em> only). We also
 compared nucleotide composition among the mitochondrial genomes of lice.
 To do this, we calculated AT%, AT skew, and GC-skew for all publicly
 available mitochondrial genomes of lice. We also compared these values
 between lice and all other insect mitochondrial genomes available on
 NCBI.
DOI: 10.5061/dryad.j6q573ncc
title: Evaluation of metronomic chemotherapy response using diffusion and dynamic contrast-enhanced MRI

description: Purpose: To investigate the feasibility of using diffusion MRI (dMRI) and
 dynamic contrast-enhanced (DCE) MRI to evaluate the treatment response of
 metronomic chemotherapy (MCT) in the 4T1 mammary tumor model of locally
 advanced breast cancer. Methods: Twelve Balb/c mice with metastatic breast
 cancer were divided into treated and untreated (control) groups. The
 treated group (n=6) received five treatments of anti-metabolite agent
 5-Fluorouracil (5FU) in the span of two weeks. dMRI and DCE-MRI were
 acquired for both treated and control groups before and after MCT.
 Immunohistochemically staining and measurements were performed after the
 post-MRI measurements for comparison. Results: The control mice had
 significantly ( p &lt;0.005) larger tumors than the MCT treated mice.
 The DCE-MRI analysis showed a decrease in contrast enhancement for the
 control group, whereas the MCT mice had a more stable enhancement between
 the pre-chemo and post-chemo time points. This confirms the antiangiogenic
 effects of 5FU treatment. Comparing amplitude of enhancement revealed a
 significantly (p&lt;0.05) higher enhancement in the MCT tumors than in
 the controls. Moreover, the MCT uptake rate was significantly
 (p&lt;0.001) slower than the controls. dMRI analysis showed the MCT
 ADC values were significantly larger than the control group at the
 post-scan time point. Conclusion: dMRI and DCE-MRI can be used as
 potential biomarkers for assessing the treatment response of MCT. The MRI
 and pathology observations suggested that in addition to the cytotoxic
 effect of cell kills, the MCT with a cytotoxic drug, 5FU, induced changes
 in the tumor vasculature similar to the anti-angiogenic effect.
DOI: 10.5061/dryad.pk0p2ngm3
title: The supplementary datasets of the study of free moment Induced by oblique transverse tarsal joint: investigation by constructive approach

description: The human foot provides numerous functions that let humans deal with
 various environments. Recently, study of the structure of the
 human foot and adjustment of an appropriate reaction force and vertical
 free moment during bipedal locomotion has gained
 attention. However, little is known about the mechanical
 (morphological) contribution of the foot structure to the reaction force
 and free moment. It is difficult to conduct a comparative experiment to
 investigate the contribution systematically by using conventional methods
 with human and cadaver foot experiments. This study focuses on
 the oblique transverse tarsal joint (TTJ) of the human foot, whose
 mechanical structure can generate appropriate free moments. We
 conduct comparative experiments with a rigid foot, a non-oblique joint
 foot (i.e., mimicking only the flexion/extension of the midfoot), and an
 oblique joint foot. Axial loading and walking experiments were
 conducted with these feet. The axial loading experiment
 demonstrated that the oblique foot generated free moment in the direction
 of internal rotation, as observed in the human foot. The walking
 experiment showed that the magnitude of the free moment generated with the
 oblique foot is significantly lower than that with the rigid foot during
 the stance phase. Using this constructive approach, the present study
 demonstrated that the oblique axis of the TTJ can mechanically generate
 free moments. This capacity might affect the transverse motion of bipedal
 walking.
DOI: 10.5061/dryad.2v6wwpzkk
title: Association of Initial Maximal Motor Ability with Long-term Functional Outcome in Patients with COL6-related Dystrophies

description: Objective: To accurately categorize the
 phenotypes of individuals with collagen VI-related
 dystrophies (COL6-RDs)during the first years of life in order to
 predict long-term motor function and pulmonary function, provide
 phenotype-specific anticipatory care and improve clinical trial readiness.
 Methods: This retrospective, multicenter, international study
 analyzed the relationship of long-term motor and pulmonary function with
 the initial maximal motor ability achieved in individuals with COL6-RD.
 Results: We studied 119 patients with COL6-RD from Spain (n = 54)
 and the US (n = 65). The early maximal motor milestones
 of (1.) ability to rise from the floor unassisted and (2.) the ability to
 climb four steps without holding onto the railing demonstrated
 reliability in distinguishing between three COL6-RD
 phenotypic subgroups: (1.) Ullrich congenital muscular dystrophy, (2.)
 Intermediate COL6-RD and (3.) Bethlem myopathy. Long-term motor
 function and pulmonary function are strongly correlated with the maximal
 motor ability achieved during the first years of life. Maximal motor
 capacity can predict other disease relevant events such as the
 age at loss of ambulation and the need for the initiation of nocturnal
 noninvasive ventilation. Conclusion: This work proposes
 a prospective phenotypic classification for
 COL6-RDs which will enable an accurateprediction of a
 patient’s COL6-RD phenotype during the first years of
 life. The ability to establish a patient’s
 COL6-RD phenotypic classification early will enable a
 more accurate prognosis of future motor
 and pulmonary function thus
 improving anticipatory clinical
 care, and it will be instrumental in aiding the
 design of future clinical trials by allowing for early stratification of
 trial cohorts.