cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11389638
title: Comparative Analysis and Gut Bacterial Community Assemblages of Grass Carp and Crucian Carp in New Lineages from Dongting Lake Area

description: This data is suppoting information for the paper "Comparative Analysis and Gut Bacterial Community Assemblages of Grass Carp and Crucian Carp in New Lineages from Dongting Lake Area", which can provide some vital informations to enhance your understand.
DOI: 10.6084/m9.figshare.11389638.v2
title: Comparative Analysis and Gut Bacterial Community Assemblages of Grass Carp and Crucian Carp in New Lineages from Dongting Lake Area

description: This data is suppoting information for the paper "Comparative Analysis and Gut Bacterial Community Assemblages of Grass Carp and Crucian Carp in New Lineages from Dongting Lake Area", which can provide some vital informations to enhance your understand.
DOI: 10.6084/m9.figshare.11389599
title: Free and bioavailable 25(OH)D correlate with β cell function and insulin sensitivity across the spectrum of glycemia

description: Supplemental table 1-Pearson correlation analysis for vitamin D related metabolites with biochemical and demographic parameters in all participants
DOI: 10.6084/m9.figshare.11389599.v2
title: Free and bioavailable 25(OH)D correlate with β cell function and insulin sensitivity across the spectrum of glycemia

description: Supplemental table 1-Pearson correlation analysis for vitamin D related metabolites with biochemical and demographic parameters in all participants
DOI: 10.6084/m9.figshare.11389599.v1
title: Free and bio-25(OH)D correlate with β cell function and insulin sensitivity across the spectrum of glucose tolerance

description: Supplemental table 1-Pearson correlation analysis for vitamin D related metabolites with biochemical and demographic parameters in all participants
DOI: 10.6084/m9.figshare.11389458
title: Proteome database of Bacillus subtilis 168

description: <i>Bacillus subtilis </i>strain 168 is a commensal bacterium in the human gastrointestinal tract, and is also a common environmental microorganism. Gram-positive and facultative anaerobic, <i>B. subtilis</i> also possess multiple differentiation pathways, which marks it as a model organism useful for understanding the fundamental processes that guide prokaryotic cellular differentiation. Specifically, <i>B. subtilis</i> is capable of differentiating into cannibalistic or competence mode, as well as enter into biofilm formation or sporulation pathways. All these speaks of a versatile metabolism as well as an intricate environmental sensing and signalling system. This work sought to provide the fundamental basis for understanding cellular physiology and genetics of this fascinating bacterium through determining the proteome database of <i>B. subtilis</i> 168 at the global level. Comprising protein name, function, amino acid sequence, the database also sports number of amino acid residues, protein molecular weight as well as corresponding nucleotide sequence of the protein through calculations done by an in-house MATLAB software. Overall, the database should find use in both fundamental and applied biology research aiming, for example, to annotate mass peaks from a whole-cell mass spectrum analysis of the bacterium, or for use in determining the molecular weight distribution of proteins in this bacterium.<br><br>
DOI: 10.6084/m9.figshare.11388804
title: Differentially Expressed Genes

description: Differential expression analysis results.
DOI: 10.6084/m9.figshare.11388864
title: Gene Set Enrichment Analysis Results

description: Full set of gene set enrichment analysis results
DOI: 10.6084/m9.figshare.11388804.v1
title: Differentially Expressed Genes

description: Differential expression analysis results.
DOI: 10.6084/m9.figshare.11388429
title: CCC Kisoro Uganda Hypertension Study Data

description: Data from a non-communicable disease clinic in Kisoro Uganda, originally collected for patient care and quality improvement initiatives, now de-identified. Data includes patient demographics, disease measures, visit data, Clinic medication availability and voucher usage data on lapses in care and surveys of patient beliefs. Study for which the data was used was cleared by Albert Einstein College of Medicine IRB.
DOI: 10.6084/m9.figshare.11388042
title: 5-HT<sub>2A</sub> and 5-HT<sub>3</sub> receptors contribute to the exacerbation of targeted and non-targeted effects of ionizing radiation-induced cell death in human colon carcinoma cells

description: <b>Purpose:</b> Serotonin (5-HT) is implicated in the underlying mechanisms which mediate cell death following ionizing radiation exposure, however, effects appear to be cell type-dependent. We sought to further characterize the role of 5-HT and 5-HT receptors (5-HTRs) in the exacerbation of cell death following ionizing radiation exposure in human colon carcinoma cells. <b>Materials and methods:</b> We examined the clonogenic survival of colon carcinoma HCT116 cells treated with 5-HT and the selective 5-HTR antagonists ketanserin (5-HT<sub>2A</sub>) and ondansetron (5-HT<sub>3</sub>), following exposure to direct ionizing radiation and irradiated cell-conditioned medium (ICCM). The relative expression of these target receptors was measured using western blotting. <b>Results:</b> Western blotting results revealed that relative protein levels of the 5-HT<sub>2A</sub> and 5-HT<sub>3</sub> receptors were similar. 5-HT concentration-dependent increases in cell death that occurred following direct ionizing radiation exposure were abolished by both 5-HTR antagonists. Death of nonirradiated cells recipient of ICCM was increased in a concentration-dependent manner by 5-HT when present during donor cell irradiation. Both 5-HTR antagonists completely abolished the increases in bystander-induced cell death generated by 5-HT. Finally, we show that exposure of cells to 5-HT prior to receipt of ICCM can also dictate the degree of bystander-induced cell death. <b>Conclusions:</b> Our findings demonstrate a definitive role for 5-HT in the exacerbation of cell death following ionizing radiation exposure in colon carcinoma cells and highlight 5-HTRs as potential markers for predicting cellular radiosensitivity.
DOI: 10.6084/m9.figshare.11388042.v1
title: 5-HT<sub>2A</sub> and 5-HT<sub>3</sub> receptors contribute to the exacerbation of targeted and non-targeted effects of ionizing radiation-induced cell death in human colon carcinoma cells

description: <b>Purpose:</b> Serotonin (5-HT) is implicated in the underlying mechanisms which mediate cell death following ionizing radiation exposure, however, effects appear to be cell type-dependent. We sought to further characterize the role of 5-HT and 5-HT receptors (5-HTRs) in the exacerbation of cell death following ionizing radiation exposure in human colon carcinoma cells. <b>Materials and methods:</b> We examined the clonogenic survival of colon carcinoma HCT116 cells treated with 5-HT and the selective 5-HTR antagonists ketanserin (5-HT<sub>2A</sub>) and ondansetron (5-HT<sub>3</sub>), following exposure to direct ionizing radiation and irradiated cell-conditioned medium (ICCM). The relative expression of these target receptors was measured using western blotting. <b>Results:</b> Western blotting results revealed that relative protein levels of the 5-HT<sub>2A</sub> and 5-HT<sub>3</sub> receptors were similar. 5-HT concentration-dependent increases in cell death that occurred following direct ionizing radiation exposure were abolished by both 5-HTR antagonists. Death of nonirradiated cells recipient of ICCM was increased in a concentration-dependent manner by 5-HT when present during donor cell irradiation. Both 5-HTR antagonists completely abolished the increases in bystander-induced cell death generated by 5-HT. Finally, we show that exposure of cells to 5-HT prior to receipt of ICCM can also dictate the degree of bystander-induced cell death. <b>Conclusions:</b> Our findings demonstrate a definitive role for 5-HT in the exacerbation of cell death following ionizing radiation exposure in colon carcinoma cells and highlight 5-HTRs as potential markers for predicting cellular radiosensitivity.
DOI: 10.6084/m9.figshare.11387748
title: Appendix 2.pdf

description: Bacterial taxa associated with ASVs from the alimentary canal of Trichoplusia ni larvae fed on collards, <i>Brassica oleraceae</i>. ASVs were obtained from the midgut, labial glands, mandibular glands, and Malpighian tubules. ASVs were assigned to taxa using the Classifier and Seqmatch modules of the Ribosomal Database Project Release 11 (https://rdp.cme.msu.edu/index.jsp).
DOI: 10.6084/m9.figshare.11387736
title: Population-based age adjustment tables for use in occupational hearing conservation programs

description: <b>Objective:</b> In occupational hearing conservation programmes, age adjustments may be used to subtract expected age effects. Adjustments used in the U.S. came from a small dataset and overlooked important demographic factors, ages, and stimulus frequencies. The present study derived a set of population-based age adjustment tables and validated them using a database of exposed workers. <b>Design:</b> Cross-sectional population-based study and retrospective longitudinal cohort study for validation. <b>Study sample:</b> Data from the U.S. National Health and Nutrition Examination Survey (unweighted <i>n</i> = 9937) were used to produce these tables. Male firefighters and emergency medical service workers (76,195 audiograms) were used for validation. <b>Results:</b> Cross-sectional trends implied less change with age than assumed in current U.S. regulations. Different trends were observed among people identifying with non-Hispanic Black race/ethnicity. Four age adjustment tables (age range: 18–85) were developed (women or men; non-Hispanic Black or other race/ethnicity). Validation outcomes showed that the population-based tables matched median longitudinal changes in hearing sensitivity well. <b>Conclusions:</b> These population-based tables provide a suitable replacement for those implemented in current U.S. regulations. These tables address a broader range of worker ages, account for differences in hearing sensitivity across race/ethnicity categories, and have been validated for men using longitudinal data.
DOI: 10.6084/m9.figshare.11387748.v1
title: Appendix 2.pdf

description: Bacterial taxa associated with ASVs from the alimentary canal of Trichoplusia ni larvae fed on collards, <i>Brassica oleraceae</i>. ASVs were obtained from the midgut, labial glands, mandibular glands, and Malpighian tubules. ASVs were assigned to taxa using the Classifier and Seqmatch modules of the Ribosomal Database Project Release 11 (https://rdp.cme.msu.edu/index.jsp).
DOI: 10.6084/m9.figshare.11387736.v1
title: Population-based age adjustment tables for use in occupational hearing conservation programs

description: <b>Objective:</b> In occupational hearing conservation programmes, age adjustments may be used to subtract expected age effects. Adjustments used in the U.S. came from a small dataset and overlooked important demographic factors, ages, and stimulus frequencies. The present study derived a set of population-based age adjustment tables and validated them using a database of exposed workers. <b>Design:</b> Cross-sectional population-based study and retrospective longitudinal cohort study for validation. <b>Study sample:</b> Data from the U.S. National Health and Nutrition Examination Survey (unweighted <i>n</i> = 9937) were used to produce these tables. Male firefighters and emergency medical service workers (76,195 audiograms) were used for validation. <b>Results:</b> Cross-sectional trends implied less change with age than assumed in current U.S. regulations. Different trends were observed among people identifying with non-Hispanic Black race/ethnicity. Four age adjustment tables (age range: 18–85) were developed (women or men; non-Hispanic Black or other race/ethnicity). Validation outcomes showed that the population-based tables matched median longitudinal changes in hearing sensitivity well. <b>Conclusions:</b> These population-based tables provide a suitable replacement for those implemented in current U.S. regulations. These tables address a broader range of worker ages, account for differences in hearing sensitivity across race/ethnicity categories, and have been validated for men using longitudinal data.
DOI: 10.6084/m9.figshare.11386569
title: Por1_6 Genome

description: A log file for the unicycler run that generated a complete genome sequence for <i>P. coronafaciens </i>1_6, and a graph file (.gfa) arising from this run.
DOI: 10.6084/m9.figshare.11385978
title: COALA70 dataset

description: The COALA70 dataset is the cd-hitted by 70% threshold version of the COALA100 dataset.
DOI: 10.6084/m9.figshare.11385975
title: COALA40 dataset

description: The COALA40 dataset is the cd-hitted by 40% threshold version of the COALA100 dataset.
DOI: 10.6084/m9.figshare.11387673.v1
title: Dynamic two stage modeling for category-level and brand-level purchases using potential outcome approach with Bayes inference

description: We propose an econometric two-stage model for category-level purchase and brand-level purchase that allows for simultaneous brand purchases in the analysis of scanner panel data. The proposed model formulation is consistent with the traditional theory of consumer behavior. We conduct Bayesian estimation with the Markov Chain Monte Carlo algorithm for our proposed model. The simulation studies show that previously proposed related models can cause severe bias in predicting future brand choices, while the proposed method can effectively predict them. Additionally in a marketing application, the proposed method can examine brand switching behaviors that existing methods cannot. Moreover, we show that the prediction accuracy of the proposed method is higher than that of existing methods.
DOI: 10.6084/m9.figshare.11385969
title: COALA100 dataset

description: COALA100 dataset is a collection of antibiotic resistance genes from 15 databases along with metadata information from these databases which includes the respective antibiotic class.
DOI: 10.6084/m9.figshare.11385975.v1
title: COALA40 dataset

description: The COALA70 dataset is the cd-hitted by 40% threshold version of the COALA100 dataset.
DOI: 10.6084/m9.figshare.11385978.v1
title: COALA70 dataset

description: The COALA70 dataset is the cd-hitted by 70% threshold version of the COALA100 dataset.
DOI: 10.25392/leicester.data.11385897
title: FIPS Moments for "A machine learning approach to classifying MESSENGER FIPS proton spectra"

description: Kappa distribution fits to FIPS proton spectra for the paper titled "A machine learning approach to classifying MESSENGER FIPS proton spectra" in the Journal of Geophysical Research: Space Physics.<br>This data repository contains the following items: - A dataset with all of the newly fitted kappa distribution parameters and the artificial neural network (ANN) outputs for each of the FIPS proton spectra ("FIPSProtonClass.dat"). - The learned weight and bias matrices for each ANN in both binary ("Matrix-ANN*.bin") and ASCII ("Matrix-ANN-*.dat") formats.- Python 3 code to read the matrix files ("ReadMatrices.py").- A PDF file ("Info.pdf") which contains a description of everything stored in this repository, including the scaling factors for the parameters which form the input feature matrices for each ANN.<br>Please read "Info.pdf" and the aforementioned paper for more information.<br>
DOI: 10.6084/m9.figshare.11385921
title: Supplemental Table S1.docx

description: The purpose of the present study was to examine the effects of repeated exposure to local heat therapy (HT) on skeletal muscle function, myofiber morphology, capillarization and mitochondrial content in humans. Twelve young adults (23.6±1.4 years, BMI 24.9±0.9 kg/m<sup>2</sup>) had one randomly selected thigh treated with HT (garment perfused with water at ~52ºC) for 8 consecutive weeks (90 min, 5 days/week) while the opposite thigh served as a control. Biopsies were obtained from the vastus lateralis muscle before and after 4 and 8 weeks of treatment. Knee extensor strength and fatigue resistance were also assessed using isokinetic dynamometry. The changes in peak isokinetic torque were higher (p=0.007) in the thigh exposed to HT than in the control thigh at weeks 4 (Control: 4.1±3.7 Nm vs. HT: 9±4.6 Nm) and 8 (Control: 1.7±2.7 Nm vs. HT: 7.7±2.9 Nm). Exposure to HT averted a temporal decline in capillarization around type 2 fibers (p&lt;0.05), but had no effect on capillarization indices in type 1 fibers. The content of eNOS was ~18% and 35% higher in the thigh exposed to HT at 4 and 8 weeks, respectively (p=0.003). Similarly, HT increased the content of small heat shock proteins HSPB5 (p=0.007) and HSPB1 (p=0.009). There were no differences between thighs for the changes in fiber CSA and mitochondrial content. These results indicate that exposure to local HT for 8 weeks promotes a pro-angiogenic environment and enhances muscle strength but does not affect mitochondrial content in humans.
DOI: 10.6084/m9.figshare.11385969.v1
title: COALA100 dataset

description: COALA100 dataset is a collection of antibiotic resistance genes from 15 databases along with metadata information from these databases which includes the respective antibiotic class.
DOI: 10.6084/m9.figshare.11385921.v1
title: Supplemental Table S1.docx

description: The purpose of the present study was to examine the effects of repeated exposure to local heat therapy (HT) on skeletal muscle function, myofiber morphology, capillarization and mitochondrial content in humans. Twelve young adults (23.6±1.4 years, BMI 24.9±0.9 kg/m<sup>2</sup>) had one randomly selected thigh treated with HT (garment perfused with water at ~52ºC) for 8 consecutive weeks (90 min, 5 days/week) while the opposite thigh served as a control. Biopsies were obtained from the vastus lateralis muscle before and after 4 and 8 weeks of treatment. Knee extensor strength and fatigue resistance were also assessed using isokinetic dynamometry. The changes in peak isokinetic torque were higher (p=0.007) in the thigh exposed to HT than in the control thigh at weeks 4 (Control: 4.1±3.7 Nm vs. HT: 9±4.6 Nm) and 8 (Control: 1.7±2.7 Nm vs. HT: 7.7±2.9 Nm). Exposure to HT averted a temporal decline in capillarization around type 2 fibers (p&lt;0.05), but had no effect on capillarization indices in type 1 fibers. The content of eNOS was ~18% and 35% higher in the thigh exposed to HT at 4 and 8 weeks, respectively (p=0.003). Similarly, HT increased the content of small heat shock proteins HSPB5 (p=0.007) and HSPB1 (p=0.009). There were no differences between thighs for the changes in fiber CSA and mitochondrial content. These results indicate that exposure to local HT for 8 weeks promotes a pro-angiogenic environment and enhances muscle strength but does not affect mitochondrial content in humans.
DOI: 10.5522/04/11385852
title: Archaeological study of Kalai Sar fort/watchtower, Tajikistan

description: Fort/watchtower and associated settlement (locally known as Kalai Sar), located in Shakhristanskiy rayon, Sughd Province, Tajikistan, not far from Shahristan (Шаҳристон) town and Khisor (Ҳисор) village. Coordinates: 39.727845° 68.711986°. This well-preserved watchtower and associated settlement activity in a small river valley was explored by Tajik and international archaeologists, during a workshop in Khujand, Tajikistan, in 2019.<br>This dataset includes several aerial images and recording outcomes from high and low altitudes. Orthomosaics, DEM's, KMZ files and 3D models for both levels are provided here.<br>Data collected by Gai Jorayev (UCL) and Denis Sorokin (Archaeological Expertise), with support from Bobomullo Bobomulloi (the Institute of History, Archaeology and Ethnography named after A. Donish), Kazuya YAMAUCHI (Research Institute of Cultural Properties, Teikyo University) and Tim Williams (UCL Institute of Archaeology). Processed by Gai Jorayev.
DOI: 10.25392/leicester.data.11385897.v1
title: FIPS Moments for "A machine learning approach to classifying MESSENGER FIPS proton spectra"

description: Kappa distribution fits to FIPS proton spectra for the paper titled "A machine learning approach to classifying MESSENGER FIPS proton spectra" in the Journal of Geophysical Research: Space Physics.<br>This dataset contains the three parameters fitted to each proton spectrum (density, temperature and kappa). Each spectral fit is analysed using 9 artificial neural networks (ANNs), where ANNs 0-7 each analyse an eight of a spectrum and the final network (ANN 8) provides an overall assessment of the quality of fit. Each network outputs a probability of the fit being good and a corresponding class label. A spectral fit is determined to be "good" when the probability ≥ 0.5. The accuracy of the final neural network is 96%, so in some cases a few spectra may be misclassified - manual verification is recommended when using these data. Please read the aforementioned paper for more information.<br>The file "FIPSProtonClass.dat" is organised into 22 columns:<br>Column 1: Date and time of spectrum formatted as "yyyy-mm-ddTHH:MM:SS.sss", where yyyy is the year, mm is the month, dd is the day, HH is the hour, MM is minutes and SS.sss is seconds.Column 2: Proton density, <i>n<sub>k</sub>, </i>in cm<sup>-3</sup>.Column 3: Proton temperature, <i>T<sub>k</sub></i>, in MK.Column 4: Kappa value - note that any value over ~10 may be approximated using a Maxwellian distribution, and any value less than 1.5 is below the limit of anti-equilibrium and is not physical.Columns 5-12: Probabilities, P0-P7, that the kappa distribution fit to each spectrum is good (output from ANN 0-7 in the paper).Column 13: Probability that the overall fit is good (output from ANN 8 in the paper).Column 14-21: Class of each split section, where 0 is bad and 1 is good. The class is 1 when P ≥ 0.5.Column 22: Overall spectral class predicted by ANN 8, where 1 is good and 0 is bad.<br>
DOI: 10.6084/m9.figshare.11385504
title: calcium imaging

description: Live cell imaging dataset from Robert Foreman "Mammalian gene expression variability is explained by cell state" in Molecular Systems Biology 2019
DOI: 10.6084/m9.figshare.11385522
title: Gene Expression Variability MSB

description: This is the data used in the 2019 Molecular systems biology publication: "Mammalian gene expression variability is explained by cell state" Robert Foreman and Roy Wollman. <br>Please see updated Figshare dataset: https://figshare.com/articles/MSB_Gene_Expression_Variability/11410212/1<br>
DOI: 10.5522/04/11385852.v1
title: Archaeological study of Kalai Sar fort/watchtower, Tajikistan

description: Fort/watchtower and associated settlement (locally known as Kalai Sar), located in Shakhristanskiy rayon, Sughd Province, Tajikistan, not far from Shahristan (Шаҳристон) town and Khisor (Ҳисор) village. Coordinates: 39.727845° 68.711986°. This well-preserved watchtower and associated settlement activity in a small river valley was explored by Tajik and international archaeologists, during a workshop in Khujand, Tajikistan, in 2019.<br>This dataset includes several aerial images and recording outcomes from high and low altitudes. Orthomosaics, DEM's, KMZ files and 3D models for both levels are provided here.<br>Data collected by Gai Jorayev (UCL) and Denis Sorokin (Archaeological Expertise), with support from Bobomullo Bobomulloi (the Institute of History, Archaeology and Ethnography named after A. Donish), Kazuya YAMAUCHI (Research Institute of Cultural Properties, Teikyo University) and Tim Williams (UCL Institute of Archaeology). Processed by Gai Jorayev.