cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/bvxq2-m1431
title: Magnetospirillum magneticum

description: This is a MamK deletion M. magneticum cell.  The data was taken at 18K, -16um defocus., division site
description: <strong>Tilt Series Date:</strong> 2005-05-08</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Dual Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -16.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> This mutant was constructed by Arash Komeili as described in the MamK  paper.  Data was collected and processed by Zhuo Li.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2005-05-08-5/3dimage_505/</p>spqfnofedeltaK002.rec,  Reconstruction (Pixel Size 2.4 nm), 143.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2005-05-08-5/3dimage_505/spqfnofedeltaK002.rec"
        > <i class="download icon"></i> Download </a></p>

        spqfnofe_pos5_002_16um_120e_18K.mrc,  Tilt Series (Pixel Size 1.2 nm), 688.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2005-05-08-5/rawdata/spqfnofe_pos5_002_16um_120e_18K.mrc"
        > <i class="download icon"></i> Download </a></p>

        spqfnofe_pos6_002_16um_120e_18K.mrc,  Tilt Series (Pixel Size 1.2 nm), 688.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2005-05-08-5/rawdata/spqfnofe_pos6_002_16um_120e_18K.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/h9dat-61002
title: Agro C58 paraformaldehyde

description: Raw data files of Agro C58 paraformaldehyde
description: <strong>Tilt Series Date:</strong> 2013-09-15</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Wild type cells were fixed with 0.5% PFA</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-15-14/rawdata/</p>c58_pfa_340015.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-15-14/rawdata/c58_pfa_340015.mrc"
        > <i class="download icon"></i> Download </a></p>

        340015_full.rec,  Reconstruction (Pixel Size 0.0 nm), 823.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-15-14/3dimage_49153/340015_full.rec"
        > <i class="download icon"></i> Download </a></p>

        et2013-09-15-14.tif,  3.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-15-14/file_10889/et2013-09-15-14.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16923470
title: Western Yucatan Channel section time series from mooring data (2018–2021)

description: Processed, CF-1.10 NetCDF data used to generate Figure 2 of the manuscript. The file contains (i) time–depth fields at the YUC4 mooring site (u, v, relative vorticity, and vertical temperature gradient), (ii) a salinity-index time series used to define event composites, and (iii) gridded section variables (meridional velocity and temperature) sampled across the Yucatan Channel. All variables share the same vertical coordinate (depth, positive down). Time is UTC seconds since 1970-01-01.Note: Raw T–S and Cuban-side mooring data are legally restricted under Canek–Cuba collaboration agreements and are not included here.
description: Provenance / MethodsYUC4 mooring records and along-channel sections were processed with objective mapping; derivatives (e.g., ∂T/∂z) were computed from the mapped fields and smoothed as described in the Supporting Information of the manuscript.

Spatial / Temporal coverage



Lon/Lat (YUC4): −86.3509°E, 21.5778°N

Section: longitudes/latitudes provided per point (18 locations)

Time window: 2018-07-28 to 2021-05-01 (1009 days)


Format & conventions



Format: NetCDF-4, CF-1.10

Coordinates: time (seconds since epoch, gregorian), depth (m, positive down), section_longitude, section_latitude

Feature type: timeSeriesProfile (with an along-section axis)


Contents (variables)



sal_index (g kg⁻¹): Salinity index at YUC4 (lon_yuc4, lat_yuc4).

v_yuc4, u_yuc4 (m s⁻¹): Meridional/zonal velocity at YUC4 (time × depth).

ro_yuc4 (s⁻¹): Relative vorticity at YUC4.

dTdz_yuc4 (°C m⁻¹): Vertical temperature gradient at YUC4.

Vgrd (m s⁻¹): Meridional velocity section (time × depth × section).

Tgrd (°C): Temperature section (time × depth × section).


(See file metadata for dimension sizes and attributes.)
DOI: 10.22002/48aj1-s1e84
title: MP wt 27.5KX

description: Mycoplasma pneumonia wt mutant, both free and cellular attachment organelle
description: <strong>Tilt Series Date:</strong> 2010-02-21</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> data collected by Jian; processed by Jian</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-16/rawdata/</p>10feb21a_MP3a_016.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-16/rawdata/10feb21a_MP3a_016.mrc"
        > <i class="download icon"></i> Download </a></p>

        10feb21a_MP3a_016_full.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-16/3dimage_17139/10feb21a_MP3a_016_full.rec"
        > <i class="download icon"></i> Download </a></p>

        10feb21a_MP3a_016_SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 524.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-16/3dimage_55962/10feb21a_MP3a_016_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16923469
title: Western Yucatan Channel section time series from mooring data (2018–2021)

description: Processed, CF-1.10 NetCDF data used to generate Figure 2 of the manuscript. The file contains (i) time–depth fields at the YUC4 mooring site (u, v, relative vorticity, and vertical temperature gradient), (ii) a salinity-index time series used to define event composites, and (iii) gridded section variables (meridional velocity and temperature) sampled across the Yucatan Channel. All variables share the same vertical coordinate (depth, positive down). Time is UTC seconds since 1970-01-01.Note: Raw T–S and Cuban-side mooring data are legally restricted under Canek–Cuba collaboration agreements and are not included here.
description: Provenance / MethodsYUC4 mooring records and along-channel sections were processed with objective mapping; derivatives (e.g., ∂T/∂z) were computed from the mapped fields and smoothed as described in the Supporting Information of the manuscript.

Spatial / Temporal coverage



Lon/Lat (YUC4): −86.3509°E, 21.5778°N

Section: longitudes/latitudes provided per point (18 locations)

Time window: 2018-07-28 to 2021-05-01 (1009 days)


Format & conventions



Format: NetCDF-4, CF-1.10

Coordinates: time (seconds since epoch, gregorian), depth (m, positive down), section_longitude, section_latitude

Feature type: timeSeriesProfile (with an along-section axis)


Contents (variables)



sal_index (g kg⁻¹): Salinity index at YUC4 (lon_yuc4, lat_yuc4).

v_yuc4, u_yuc4 (m s⁻¹): Meridional/zonal velocity at YUC4 (time × depth).

ro_yuc4 (s⁻¹): Relative vorticity at YUC4.

dTdz_yuc4 (°C m⁻¹): Vertical temperature gradient at YUC4.

Vgrd (m s⁻¹): Meridional velocity section (time × depth × section).

Tgrd (°C): Temperature section (time × depth × section).


(See file metadata for dimension sizes and attributes.)
DOI: 10.22002/hr72g-n5703
title: VSVGpNL4GFP entry HUVECs

description: HUVECs 30 min post spinoculation with VSVGpNL4GFP
description: <strong>Tilt Series Date:</strong> 2011-08-12</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Proviral construct from Irvin Chen UCLA</p>
<strong>Purification / Growth Conditions / Treatment:</strong> infected VSVG pNL4GFP by spinoculation</p>
<strong>Sample Preparation:</strong> manual blot</p>
  11aug12_31_ns_full.jpg: file associated to 3D Image #54254
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-12-30/rawdata/</p>11aug12_31_ns.st,  Tilt Series (Pixel Size 0.5 nm), 809.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-12-30/rawdata/11aug12_31_ns.st"
        > <i class="download icon"></i> Download </a></p>

        11aug12_31_ns_full.rec,  Reconstruction (Pixel Size 2.0 nm), 908.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-12-30/3dimage_54254/11aug12_31_ns_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11aug12_31_ns_full.tiff,  file associated to 3D Image #54254, 970.9 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-12-30/file_13028/11aug12_31_ns_full.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/56361-tqq31
title: Cryo-sectioned synchronized Jurkat

description: Jurkats were cell-cycle synchronized (Sarah Cheng) using nocodazole then HP frozen and cryo-sectioned by Mark Ladinsky-Grid4
description: <strong>Tilt Series Date:</strong> 2012-08-16</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Jurkat Human T-cell</p>
<strong>Strain:</strong> Clone E6-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cryo-sectioning by Mark Ladinsky.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> nocodazole synchronized</p>
<strong>Sample Preparation:</strong> cryo-sectioned by Mark Ladinsky</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-08-16-14/3dimage_68678/</p>12aug16_mitoticjurkat_17_BINNED_NEW_full.rec,  Reconstruction (Pixel Size 2.0 nm), 4.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-08-16-14/3dimage_68678/12aug16_mitoticjurkat_17_BINNED_NEW_full.rec"
        > <i class="download icon"></i> Download </a></p>

        12aug16_mitoticjurkat_17.mrc,  Tilt Series (Pixel Size 0.5 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-08-16-14/rawdata/12aug16_mitoticjurkat_17.mrc"
        > <i class="download icon"></i> Download </a></p>

        12aug16_mitoticjurkat_17_BINNED_NEW_full.tiff,  file associated to 3D Image #68678, 2.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-08-16-14/file_15945/12aug16_mitoticjurkat_17_BINNED_NEW_full.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/sb5jg-asa40
title: MP TopJ 27.5KX

description: Mycoplasma pneumonia TopJ mutant, bad alignment
description: <strong>Tilt Series Date:</strong> 2010-03-31</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> data collected by Jian; processed by Jian</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-25/rawdata/</p>10mar31a_B572c_032.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-25/rawdata/10mar31a_B572c_032.mrc"
        > <i class="download icon"></i> Download </a></p>

        10mar31a_B572c_032_part.rec,  Reconstruction (Pixel Size 1.548 nm), 314.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-25/3dimage_17091/10mar31a_B572c_032_part.rec"
        > <i class="download icon"></i> Download </a></p>

        10mar31a_B572c_032_SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 524.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-25/3dimage_55980/10mar31a_B572c_032_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ynvxw-vv761
title: HeLa cells

description: LOOKING FOR MIDBODIES
description: <strong>Tilt Series Date:</strong> 2014-11-18</p>
<strong>Data Taken By:</strong> Rasika Ramdasi</p>
<strong>Species / Specimen:</strong> HeLa cells</p>
<strong>Strain:</strong> ATCC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-55.0°, 55.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF TOMO</p>
<strong>Collaborators and Roles:</strong> cells and siRNA obtained from Doug Mackay/ Cathrine Ullman</p>
<strong>Sample Preparation:</strong> HeLa cells+ siRNA NUP153+ Thymidine 2mM, 14 h post thymidine release</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-11-18-9/rawdata/</p>midbody50002.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-11-18-9/rawdata/midbody50002.mrc"
        > <i class="download icon"></i> Download </a></p>

        midbody50002_part111_1.rec,  Reconstruction (Pixel Size 2.4 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-11-18-9/3dimage_48177/midbody50002_part111_1.rec"
        > <i class="download icon"></i> Download </a></p>

        midbody50002new_full.rec,  Reconstruction (Pixel Size 2.4 nm), 270.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-11-18-9/3dimage_48271/midbody50002new_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7yrrh-2fd66
title: HeLa

description: Synchronized, looking for midbodies
description: <strong>Tilt Series Date:</strong> 2014-01-05</p>
<strong>Data Taken By:</strong> Rasika Ramdasi</p>
<strong>Species / Specimen:</strong> HeLa cells</p>
<strong>Strain:</strong> ATCC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF tomo</p>
<strong>Collaborators and Roles:</strong> With Doug Mckay and Katherine Ullman</p>
<strong>Sample Preparation:</strong> HeLa cells+ siRNA NUP 153+ Thymidine 2mM. 14 hour after release</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-01-05-5/rawdata/</p>10005.mrc,  Tilt Series (Pixel Size 0.6 nm), 861.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-01-05-5/rawdata/10005.mrc"
        > <i class="download icon"></i> Download </a></p>

        10005_part121_15.rec,  Reconstruction (Pixel Size 2.4 nm), 156.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-01-05-5/3dimage_50348/10005_part121_15.rec"
        > <i class="download icon"></i> Download </a></p>

        1000new5_full.rec,  Reconstruction (Pixel Size 0.0 nm), 38.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-01-05-5/3dimage_50543/1000new5_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vcmmn-66p51
title: (D161A)MamK-GFP/MamK_deletion

description: Raw data files of (D161A)MamK-GFP/MamK_deletion
description: <strong>Tilt Series Date:</strong> 2009-11-23</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -16.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> Cells provided by Arash Komeili; data collected by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> (Probably) stationary phase </p>
<strong>Sample Preparation:</strong> Quantifoil R2/2, R2/1, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-8/rawdata/</p>09nov23a_D161AdK_008.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-8/rawdata/09nov23a_D161AdK_008.mrc"
        > <i class="download icon"></i> Download </a></p>

        09nov23a_D161AdK_008_full.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-8/3dimage_9630/09nov23a_D161AdK_008_full.rec"
        > <i class="download icon"></i> Download </a></p>

        09nov23a_D161AdK_008.tif,  740.4 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-8/file_2696/09nov23a_D161AdK_008.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.zfyzc4
title: Occurrence Download

description: A dataset containing 6615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tanacetum vulgare",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6615 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040102-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/65zk9-ant06
title: H.hepaticus

description: Helicobacter hepaticus cell poles
description: <strong>Tilt Series Date:</strong> 2013-04-06</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Helicobacter hepaticus</p>
<strong>Strain:</strong> ATCC 51449</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1°, constant angular increment, dosage: 165.0 eV/Å²,  defocus: -10.0 μm,  magnification: 41000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> grown in the Mazmanian lab</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in the Mazmanian lab</p>
  aba2013-04-06-20_slicer5023.jpg: chemoreceptor aba2013-04-06-20_slicer5026.jpg: peptidoglycan .  unknown filament
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-04-06-20/rawdata/</p>hepaticus41mag0015.mrc,  Tilt Series (Pixel Size 0.28 nm), 3.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-04-06-20/rawdata/hepaticus41mag0015.mrc"
        > <i class="download icon"></i> Download </a></p>

        hepaticus41mag0015_full.rec,  Reconstruction (Pixel Size 1.12 nm), 706.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-04-06-20/3dimage_27012/hepaticus41mag0015_full.rec"
        > <i class="download icon"></i> Download </a></p>

        aba2013-04-06-20_slicer16444.png,  REZ .  -andrew, 539.0 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/aba2013-04-06-20_slicer16444.png"
        > <i class="download icon"></i> Download </a></p>