cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.e8sf7e
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neomensularia F.Wu, L.W.Zhou & Y.C.Dai, 2016"
 ]
}

 The dataset includes 25 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139226-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7nsn5c
title: Occurrence Download

description: A dataset containing 254331 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine hirsuta L."
 ]
}

 The dataset includes 254331 records from 1309 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148478-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcb9yz
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Davallia sinensis (Christ) Ching"
 ]
}

 The dataset includes 14 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0247400-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqcgpf
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine konaensis H.St.John"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148493-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hp79dr
title: Occurrence Download

description: A dataset containing 19302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Naturalis Biodiversity Center (NL) - Botany",
 "TaxonKey is Myristicaceae"
 ]
}

 The dataset includes 19302 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256056-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfgnx2
title: Occurrence Download

description: A dataset containing 1240 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caiman latirostris (Daudin, 1801)"
 ]
}

 The dataset includes 1240 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139219-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmj3p3
title: Occurrence Download

description: A dataset containing 2490 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus fraternus (Smith, 1854)"
 ]
}

 The dataset includes 2490 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0194247-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxcwr4
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Geonoma orbignyana Mart."
 ]
}

 The dataset includes 138 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0141421-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62h48h
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Millerichthys robustus (Miller & Hubbs, 1974)"
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139221-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3p6f7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine kruesselii Johow"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148494-220831081235567/datasets/export for details.
DOI: 10.5281/zenodo.11491183
title: HEroBM: a deep equivariant graph neural network for high-fidelity backmapping from coarse-grained to all-atom structures

description: Molecular simulations play a pivotal role in chemistry, biology, and material sciences, enabling thestudy of complex dynamic properties within systems. Coarse-grained (CG) techniques have emergedas indispensable tools in this domain, facilitating the sampling of large-scale systems and extendingsimulation timescales by simplifying system representation. However, CG approaches involve a trade-off: they sacrifice atomistic details that may be crucial for understanding the underlying processes.To address this challenge, a recommended strategy is to identify key CG conformations and employbackmapping methods to retrieve atomistic coordinates. Currently, rule-based methods often yieldsuboptimal geometries and rely on energy relaxation, resulting in less-than-optimal outcomes. Incontrast, machine learning techniques offer higher accuracy but may lack transferability betweensystems or be tied to specific CG mappings. In this study, we present HEroBM, a dynamic and scalablemethod that utilizes deep equivariant graph neural networks and a hierarchical approach to achievehigh-resolution backmapping. HEroBM is capable of handling any type of CG mapping, providing aversatile and efficient protocol for reconstructing atomistic structures with high accuracy. Groundedin local principles, HEroBM spans the entire chemical space and can be applied across systems ofvarying composition and sizes. We demonstrate the versatility of our framework through a range ofbiological systems, including a complex real-case scenario. Here, our end-to-end backmapping approachaccurately generates atomistic coordinates for a G protein-coupled receptor bound to an organic smallmolecule within a cholesterol/phospholipid bilayer. The high-fidelity HEroBM backmapping enablesresearchers to effortlessly transition between CG and all-atom simulations, opening unprecedentedavenues for molecular investigations.
DOI: 10.5281/zenodo.11491184
title: HEroBM: a deep equivariant graph neural network for high-fidelity backmapping from coarse-grained to all-atom structures

description: Molecular simulations play a pivotal role in chemistry, biology, and material sciences, enabling thestudy of complex dynamic properties within systems. Coarse-grained (CG) techniques have emergedas indispensable tools in this domain, facilitating the sampling of large-scale systems and extendingsimulation timescales by simplifying system representation. However, CG approaches involve a trade-off: they sacrifice atomistic details that may be crucial for understanding the underlying processes.To address this challenge, a recommended strategy is to identify key CG conformations and employbackmapping methods to retrieve atomistic coordinates. Currently, rule-based methods often yieldsuboptimal geometries and rely on energy relaxation, resulting in less-than-optimal outcomes. Incontrast, machine learning techniques offer higher accuracy but may lack transferability betweensystems or be tied to specific CG mappings. In this study, we present HEroBM, a dynamic and scalablemethod that utilizes deep equivariant graph neural networks and a hierarchical approach to achievehigh-resolution backmapping. HEroBM is capable of handling any type of CG mapping, providing aversatile and efficient protocol for reconstructing atomistic structures with high accuracy. Groundedin local principles, HEroBM spans the entire chemical space and can be applied across systems ofvarying composition and sizes. We demonstrate the versatility of our framework through a range ofbiological systems, including a complex real-case scenario. Here, our end-to-end backmapping approachaccurately generates atomistic coordinates for a G protein-coupled receptor bound to an organic smallmolecule within a cholesterol/phospholipid bilayer. The high-fidelity HEroBM backmapping enablesresearchers to effortlessly transition between CG and all-atom simulations, opening unprecedentedavenues for molecular investigations.
DOI: 10.15468/dl.pevdsj
title: Occurrence Download

description: A dataset containing 18044 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Isoetes lacustris L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18044 records from 258 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241340-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhkyun
title: Occurrence Download

description: A dataset containing 32266 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Survey and monitoring records for Scottish Wildlife Trust reserves from reserve convenors and Trust volunteers - Verified data"
 ]
}

 The dataset includes 32266 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009330-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ernc6
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-117.45425 33.55785,-117.24425 33.55785,-117.24425 33.75067,-117.45425 33.75067,-117.45425 33.55785))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eschscholzia californica Cham.",
 "Year 2019-2019"
 ]
}

 The dataset includes 75 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035993-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbv68c
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen"
 ]
 },
 {
 "or" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "DatasetKey is iNaturalist Research-grade Observations",
 "DatasetKey is Xeno-canto - Bird sounds from around the world",
 "DatasetKey is Animal Sound Archive",
 "DatasetKey is AMNH Bird Collection",
 "DatasetKey is 2006-birds-of-malawi-species-cards",
 "DatasetKey is LSUMZ Birds Collection",
 "DatasetKey is Observation.org, Nature data from around the World",
 "DatasetKey is checklist-of-evergreen-forest-birds-in-thyolo"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Apalis chariessa Reichenow, 1879"
 ]
}

 The dataset includes 83 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293322-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvefeg
title: Occurrence Download

description: A dataset containing 453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Quasipaa spinosa (David, 1875)"
 ]
}

 The dataset includes 453 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259480-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i6yt0m
title: Occurrence Download

description: A dataset containing 225038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Picea abies (L.) H.Karst.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 225038 records from 497 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009331-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhyzag
title: Occurrence Download

description: A dataset containing 1751 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "TaxonKey is Bromus L.",
 "Year 1000-1890"
 ]
}

 The dataset includes 1751 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0312641-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vttdsk
title: Occurrence Download

description: A dataset containing 4039 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nasua nasua (Linnaeus, 1766)"
 ]
}

 The dataset includes 4039 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293333-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hen3d6
title: Occurrence Download

description: A dataset containing 5337 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onychophora"
 ]
}

 The dataset includes 5337 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220388-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpkxqn
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cinnamomum erythropus (Nees & Mart.) Kosterm."
 ]
}

 The dataset includes 87 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0285987-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzsuua
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xanthostemon verdugonianus Náves ex Fern.-Vill."
 ]
}

 The dataset includes 48 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009334-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tz3ser
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Goniophlebium mehipitense (C.Chr.) Parris"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282427-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axqguc
title: Occurrence Download

description: A dataset listing the 2367 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is India",
 "Geometry POLYGON((77.42285 7.98926,75.4541 13.43848,73.62598 18.14941,72.74707 21.80566,72.78223 19.13379,73.2041 16.98926,73.16895 16.25098,74.39941 14.52832,75.03223 12.17285,76.29785 9.95801,76.47363 8.86816,77.42285 7.98926))"
 ]
}

 The dataset's 2367 records were derived from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262865-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqnbn2
title: Occurrence Download

description: A dataset containing 1207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "Year 2010-2019",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Leptosomus discolor (Hermann, 1783)"
 ]
}

 The dataset includes 1207 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009334-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvpu9c
title: Occurrence Download

description: A dataset containing 6066 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Communities of ground beetles (Carabidae, Coleoptera) in broad-leaved forests of protected and urban areas of the Kaluga Oblast (European Russia)"
 ]
}

 The dataset includes 6066 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0285986-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzbyvq
title: Occurrence Download

description: A dataset containing 21501837 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Brazil"
 ]
}

 The dataset includes 21501837 records from 2163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005686-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17486459
title: Dataset for Untargeted Gut Metabolomics to Delve the Interplay between Selenium Supplementation and Gut Microbiota

description: Abundance data of metabolites altered among the study groups: feces from control mice, feces from selenium-supplemented control mice, feces from antibiotic-treated mice, and feces from antibiotic-treated mice supplemented with selenium.
DOI: 10.5281/zenodo.17486460
title: Dataset for Untargeted Gut Metabolomics to Delve the Interplay between Selenium Supplementation and Gut Microbiota

description: Abundance data of metabolites altered among the study groups: feces from control mice, feces from selenium-supplemented control mice, feces from antibiotic-treated mice, and feces from antibiotic-treated mice supplemented with selenium.
DOI: 10.13012/b2idb-2992911_v1
title: Data for Construction of a Compact Array of Microplasma Jet Devices and Its Application for Random Mutagenesis of Rhodosporidium toruloides

description: A small and efficient DNA mutation-inducing machine was constructed with an array of microplasma jet devices (7 × 1) that can be operated at atmospheric pressure for microbial mutagenesis. Using this machine, we report disruption of a plasmid DNA and generation of mutants of an oleaginous yeast Rhodosporidium toruloides. Specifically, a compact-sized microplasma channel (25 × 20 × 2 mm3) capable of generating an electron density of greater than 1013 cm–3 was constructed to produce reactive species (N2*, N2+, O, OH, and Hα) under helium atmospheric conditions to induce DNA mutagenesis. The length of microplasma channels in the device played a critical role in augmenting both the volume of plasma and the concentration of reactive species. First, we confirmed that microplasma treatment can linearize a plasmid by creating nicks in vitro. Second, we treated R. toruloides cells with a jet device containing 7 microchannels for 5 min; 94.8% of the treated cells were killed, and 0.44% of surviving cells showed different colony colors as compared to their parental colony. Microplasma-based DNA mutation is energy-efficient and can be a safe alternative for inducing mutations compared to conventional methods using toxic mutagens. This compact and scalable device is amenable for industrial strain improvement involving large-scale mutagenesis.
DOI: 10.34740/kaggle/dsv/14461858
title: Daily Public Opinion on Israel-Palestine War
DOI: 10.15468/dl.k9x8ej
title: Occurrence Download

description: A dataset containing 866972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Year is 2001",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 866972 records from 330 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003469-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/enfeil
title: Replication Data for: A Hedge Fund in Your Garage: Automobile purchases under gasoline price uncertainty

description: Replication code and publicly available data for this paper
DOI: 10.15468/dl.chpt7m
title: Occurrence Download

description: A dataset containing 2348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phragmites karka",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 2348 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003524-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rsdauk
title: Occurrence Download

description: A dataset containing 4367 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coluber constrictor mormon"
 ]
}

 The dataset includes 4367 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003525-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7a27cm
title: Occurrence Download

description: A dataset containing 835 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melissodes pallidisignatus"
 ]
}

 The dataset includes 835 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003526-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z8d9rz
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leporinus bistriatus",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 27 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003527-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18557610
title: EDAX HDF5 (.oh5) EBSD map files

description: Acquired on ThermoFisher Apreo 2 SEM with EDAX Velocity EBSD detector running APEX 2 software, postprocessed and exported using OIMA 9 software.
DOI: 10.5281/zenodo.18557609
title: EDAX HDF5 (.oh5) EBSD map files

description: Acquired on ThermoFisher Apreo 2 SEM with EDAX Velocity EBSD detector running APEX 2 software, postprocessed and exported using OIMA 9 software.