cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1126250.10fu
title: SH1126250.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1126251.10fu
title: SH1126251.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1126252.10fu
title: SH1126252.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1126254.10fu
title: SH1126254.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1126255.10fu
title: SH1126255.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1126256.10fu
title: SH1126256.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1126258.10fu
title: SH1126258.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1126261.10fu
title: SH1126261.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1126264.10fu
title: SH1126264.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1126267.10fu
title: SH1126267.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25549/inscriptifact-ouc111321279
title: Cuneiform Tablet 000227, CUN.000227

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions 000227 ❧ [Text or Publication Number Note:] CUN.000227 ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.
DOI: 10.15468/dl.3o9esm
title: Occurrence Download

description: A dataset containing 345 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Museo Provincial de Ciencias Naturales “Florentino Ameghino”, Santa Fe, Argentina - Colección Squamata (no Serpentes) (MFA-ZV-Sq)"
 ]
}

 The dataset includes 345 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011181-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eaemoc
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bairdiella ensifera (Jordan & Gilbert, 1882)",
 "Geometry POLYGON((-147.22 -25.58,-147.22 39.82,-37.00 39.82,-37.00 -25.58,-147.22 -25.58))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 28 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063862-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqe6vp
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "TaxonKey is Fabaceae",
 "HasGeospatialIssue is false"
 ]
 },
 {
 "and" : [
 "BasisOfRecord is one of (Fossil, Specimen)",
 "TaxonKey is one of (Dialium excelsum Louis ex Steyaert)",
 {
 "not" : {
 "Issue" : [
 "is one of (Zero coordinate, Institution match fuzzy, Ambiguous institution, Institution match none)"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059137-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111128613
title: XJudg with Schoyen Schoyen MS 2861 (Judg 4.5-6), XJudg

description: [Text Description:] One fragment from XJudg, four lines ❧ [Text or Publication Number Note:] DSS F.Judg3; Schoyen MS 2861; XJudg ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] Fragment 3: 3.1x8.5cm; medium to dark brown, flaking of surface ❧ [Physical Object Note:] Text from two cols., middle margin; line spacing c. 6mm
DOI: 10.15468/dl.uldkqi
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bairdiella icistia (Jordan & Gilbert, 1882)",
 "Geometry POLYGON((-135.83 10.74,-135.83 41.57,-80.73 41.57,-80.73 10.74,-135.83 10.74))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 178 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063863-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11078623
title: Twin colony isolate genome assemblies: Chlamydomonas 3112/3222 and WS3/WS7 and Scenedesmus ARA/ARA3

description: Genomes and assemblies for twin isolate pairs from:

David R. Nelson, Amphun Chaiboonchoe, Weiqi Fu, Khaled M. Hazzouri, Ziyuan Huang, Ashish Jaiswal, Sarah Daakour, Alexandra Mystikou, Marc Arnoux, Mehar Sultana, Kourosh Salehi-Ashtiani,Potential for Heightened Sulfur-Metabolic Capacity in Coastal Subtropical Microalgae,iScience,Volume 11,2019,Pages 450-465,ISSN 2589-0042,https://doi.org/10.1016/j.isci.2018.12.035.(https://www.sciencedirect.com/science/article/pii/S2589004218302657)

Abstract: SummaryThe activities of microalgae support nutrient cycling that helps to sustain aquatic and terrestrial ecosystems. Most microalgal species, especially those from the subtropics, are genomically uncharacterized. Here we report the isolation and genomic characterization of 22 microalgal species from subtropical coastal regions belonging to multiple clades and three from temperate areas. Halotolerant strains including Halamphora, Dunaliella, Nannochloris, and Chloroidium comprised the majority of these isolates. The subtropical-based microalgae contained arrays of methyltransferase, pyridine nucleotide-disulfide oxidoreductase, abhydrolase, cystathionine synthase, and small-molecule transporter domains present at high relative abundance. We found that genes for sulfate transport, sulfotransferase, and glutathione S-transferase activities were especially abundant in subtropical, coastal microalgal species and halophytic species in general. Our metabolomics analyses indicate lineage- and habitat-specific sets of biomolecules implicated in niche-specific biological processes. This work effectively expands the collection of available microalgal genomes by ∼50%, and the generated resources provide perspectives for studying halophyte adaptive traits.Keywords: Global Nutrient Cycle; Phycology; Genomics; Metabolomics

https://www.sciencedirect.com/science/article/pii/S2589004218302657

 

Files are as follows:

 

.fa = assembly

.tr.fa = coding sequences

.aa.fa = predicted proteins

.gff = annotation files
DOI: 10.5281/zenodo.11078624
title: Twin colony isolate genome assemblies: Chlamydomonas 3112/3222 and WS3/WS7 and Scenedesmus ARA/ARA3

description: Genomes and assemblies for twin isolate pairs from:

David R. Nelson, Amphun Chaiboonchoe, Weiqi Fu, Khaled M. Hazzouri, Ziyuan Huang, Ashish Jaiswal, Sarah Daakour, Alexandra Mystikou, Marc Arnoux, Mehar Sultana, Kourosh Salehi-Ashtiani,Potential for Heightened Sulfur-Metabolic Capacity in Coastal Subtropical Microalgae,iScience,Volume 11,2019,Pages 450-465,ISSN 2589-0042,https://doi.org/10.1016/j.isci.2018.12.035.(https://www.sciencedirect.com/science/article/pii/S2589004218302657)

Abstract: SummaryThe activities of microalgae support nutrient cycling that helps to sustain aquatic and terrestrial ecosystems. Most microalgal species, especially those from the subtropics, are genomically uncharacterized. Here we report the isolation and genomic characterization of 22 microalgal species from subtropical coastal regions belonging to multiple clades and three from temperate areas. Halotolerant strains including Halamphora, Dunaliella, Nannochloris, and Chloroidium comprised the majority of these isolates. The subtropical-based microalgae contained arrays of methyltransferase, pyridine nucleotide-disulfide oxidoreductase, abhydrolase, cystathionine synthase, and small-molecule transporter domains present at high relative abundance. We found that genes for sulfate transport, sulfotransferase, and glutathione S-transferase activities were especially abundant in subtropical, coastal microalgal species and halophytic species in general. Our metabolomics analyses indicate lineage- and habitat-specific sets of biomolecules implicated in niche-specific biological processes. This work effectively expands the collection of available microalgal genomes by ∼50%, and the generated resources provide perspectives for studying halophyte adaptive traits.Keywords: Global Nutrient Cycle; Phycology; Genomics; Metabolomics

https://www.sciencedirect.com/science/article/pii/S2589004218302657

 

Files are as follows:

 

.fa = assembly

.tr.fa = coding sequences

.aa.fa = predicted proteins

.gff = annotation files
DOI: 10.15468/dd.36xhg5
title: Worldwide Rhodophyta Occurrence Data

description: This derived dataset contains worldwide occurrence data for the phylum Rhodophyta. The dataset was filtered and reduced significantly from GBIF-mediated occurrence data. It includes detailed information on the global presence and distribution of red algae, also known as rhodophytes. The dataset provides comprehensive details on common names, morphological forms, genera, and species counts across various aquatic ecosystems worldwide. This dataset was prepared by filtering GBIF.org data to include only records relevant to Rhodophyta from all over the globe, ensuring a broad and representative coverage of this important phylum.
DOI: 10.25549/inscriptifact-ouc112025303
title: Cuneiform Tablet 1913.14.1507, Spurlock 1913.14.1507

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.1507; CDLI P421359 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/1.5) Moderate Yellowish Pink (5YR 7.5/4) Medium Gray (N 5.25/ 22.1% R) ❧ [Physical Object Note:] 10.5 x 7.4 x 2.6 cm (195g)
DOI: 10.15468/dl.mfdvia
title: Occurrence Download

description: A dataset containing 8582 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 8582 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007147-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11453495
title: Understanding Crypto Trading

description: Datasets used in the thesis: Understanding Crypto Trading to obtain the Masters in Computer Science and Engineering from Instituto Superior Técnico
DOI: 10.15468/dl.gruyxy
title: Occurrence Download

description: A dataset containing 1572906 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Setophaga petechia (Linnaeus, 1766)"
 ]
}

 The dataset includes 1572906 records from 218 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005876-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112025356
title: Cuneiform Tablet 1913.14.1507, Spurlock 1913.14.1507

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.1507; CDLI P421359 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/1.5) Moderate Yellowish Pink (5YR 7.5/4) Medium Gray (N 5.25/ 22.1% R) ❧ [Physical Object Note:] 10.5 x 7.4 x 2.6 cm (195g)
DOI: 10.15468/dl.qvijqs
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphenarium purpurascens Charpentier, 1845"
 ]
}

 The dataset includes 146 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063895-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.asubm9
title: Occurrence Download

description: A dataset containing 9509 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stenella frontalis (G.Cuvier, 1829)"
 ]
}

 The dataset includes 9509 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057409-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvb6x8
title: Occurrence Download

description: A dataset containing 2770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Occurrence evidence, Material sample, Material citation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhinella horribilis (Wiegmann, 1833)"
 ]
}

 The dataset includes 2770 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001407-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.