cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tvubcw
title: Occurrence Download

description: A dataset listing the 10633 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is EOD – eBird Observation Dataset"
 ]
}

 The dataset's 10633 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010723-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7p2he
title: Occurrence Download

description: A dataset containing 1056205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-04-25",
 "EventDate is less than or equal to 2025-05-25",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 1056205 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010253-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v8d382
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Peraphyllum Nutt."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010263-250515123054153/datasets/export for details.
DOI: 10.25549/inscriptifact-ouc110593028
title: Persepolis Fortification Aramaic Text 295, PFAT 295

description: [Text Description:] Administrative text with seals PFATS 0063s; PFATS 0294s; PFATS 0008s, poss. PFUTS 0109s; PFATS 0010s ❧ [Text or Publication Number Note:] PFAT 295, Bowman 295 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with incised inscription and ink traces. Seal impressions PFATS 0063s on upper edge; PFATS 0294s on reverse; PFATS 0008s, poss. PFUTS 0109s on bottom edge; PFATS 0010s on flat edge. ❧ [Physical Object Note:] Damage on obverse, round edge
DOI: 10.25549/inscriptifact-ouc110594960
title: Persepolis Fortification Anepigraphic Tablet 0836.105, PFAnep 0836.105

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0836.105, PFUT 0836-105 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions
DOI: 10.25549/inscriptifact-ouc110594946
title: Persepolis Fortification Elamite Tablet 2202.101, PF 2202.101

description: [Text Description:] Administrative text. ❧ [Text or Publication Number Note:] PF 2202.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Large clay tablet with cuneiform text.
DOI: 10.25549/inscriptifact-ouc110593026
title: Persepolis Fortification Aramaic Text 294, PFAT 294

description: [Text Description:] Administrative text with illegible seal? ❧ [Text or Publication Number Note:] PFAT 294, Bowman 294 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Illegible seal impression on obverse? ❧ [Physical Object Note:] Damage on flat edge
DOI: 10.25549/inscriptifact-ouc110593016
title: Persepolis Fortification Aramaic Text 294, PFAT 294

description: [Text Description:] Administrative text with illegible seal? ❧ [Text or Publication Number Note:] PFAT 294, Bowman 294 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Illegible seal impression on obverse? ❧ [Physical Object Note:] Damage on flat edge
DOI: 10.25549/inscriptifact-ouc110594931
title: Persepolis Fortification Elamite Tablet 2202.101, PF 2202.101

description: [Text Description:] Administrative text. ❧ [Text or Publication Number Note:] PF 2202.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Large clay tablet with cuneiform text.
DOI: 10.25549/inscriptifact-ouc110592982
title: Persepolis Fortification Aramaic Text 293, PFAT 293

description: [Text Description:] Administrative text with seal PFATS 0293s ❧ [Text or Publication Number Note:] PFAT 293, Bowman 293 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0293s on obverse. ❧ [Physical Object Note:] Damage on round edge
DOI: 10.25549/inscriptifact-ouc110592951
title: Persepolis Fortification Aramaic Text 293, PFAT 293

description: [Text Description:] Administrative text with seal PFATS 0293s ❧ [Text or Publication Number Note:] PFAT 293, Bowman 293 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0293s on obverse. ❧ [Physical Object Note:] Damage on round edge
DOI: 10.25549/inscriptifact-ouc110592967
title: Persepolis Fortification Aramaic Text 293, PFAT 293

description: [Text Description:] Administrative text with seal PFATS 0293s ❧ [Text or Publication Number Note:] PFAT 293, Bowman 293 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0293s on obverse. ❧ [Physical Object Note:] Damage on round edge
DOI: 10.25549/inscriptifact-ouc110592949
title: Persepolis Fortification Aramaic Text 292, PFAT 292

description: [Text Description:] Administrative text with seal PFS 0124* ❧ [Text or Publication Number Note:] PFAT 292, Bowman 292 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFS 0124* on obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110592958
title: Persepolis Fortification Aramaic Text 293, PFAT 293

description: [Text Description:] Administrative text with seal PFATS 0293s ❧ [Text or Publication Number Note:] PFAT 293, Bowman 293 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0293s on obverse. ❧ [Physical Object Note:] Damage on round edge
DOI: 10.25549/inscriptifact-ouc110592940
title: Persepolis Fortification Aramaic Text 293, PFAT 293

description: [Text Description:] Administrative text with seal PFATS 0293s ❧ [Text or Publication Number Note:] PFAT 293, Bowman 293 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0293s on obverse. ❧ [Physical Object Note:] Damage on round edge
DOI: 10.25549/inscriptifact-ouc110592937
title: Persepolis Fortification Aramaic Text 292, PFAT 292

description: [Text Description:] Administrative text with seal PFS 0124* ❧ [Text or Publication Number Note:] PFAT 292, Bowman 292 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFS 0124* on obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110592953
title: Persepolis Fortification Aramaic Text 293, PFAT 293

description: [Text Description:] Administrative text with seal PFATS 0293s ❧ [Text or Publication Number Note:] PFAT 293, Bowman 293 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0293s on obverse. ❧ [Physical Object Note:] Damage on round edge
DOI: 10.3535/z14-lx9-y3g
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.28573709
title: Recombinant auto-bioluminescent <i>Escherichia coli</i> to monitor the progression of <i>Escherichia coli</i> infection in the embryonated chicken eggs

description: Avian pathogenic <i>Escherichia coli</i> (APEC) infections in poultry adversely affect health and production, with public health implications. This study assessed the potential of bioluminescence imaging for real-time, noninvasive tracking of microbial progression in 12-day-old chicken embryos inoculated with an APEC strain or its derivatives integrated either with <i>lux</i>ABCDE or <i>ilux2</i> operon. Eggs were imaged daily for bioluminescence detection, with dead embryos sampled immediately and survivors killed at 5-days post-inoculation (dpi). The eggs were opened, and egg contents were imaged for bioluminescence. Yolks were sampled for <i>E. coli</i> isolation and quantification. The results showed lethality rates of 100%, 93.3%, and 80% in embryos inoculated with native strain, <i>lux</i>ABCDE, or <i>ilux2,</i> respectively. Bioluminescence analysis showed increased bioluminescence signal strength over time preceding embryo death. Surviving embryos exhibited a sequential reduction in signal strength. A strong positive correlation was found between bioluminescence signal intensity <i>in ovo</i> and <i>ex ovo</i>, with <i>ilux2-</i>APEC-infected eggs showing a higher luminoscore than <i>lux</i>ABCDE-APEC. The <i>E. coli</i> load in yolks of APEC-inoculated eggs showed a positive trend over time. Overall, bioluminescence imaging of <i>ilux2</i> operon-labelled bacteria enabled more efficient real-time detection and monitoring of <i>E. coli in ovo</i>. Multiple imaging sessions on the same embryo throughout the experiment allowed precise monitoring of infection progression without sequential culling. This offers a controlled platform for evaluating antimicrobial treatment efficacy in an <i>in ovo</i> model that closely resembles an <i>in vivo</i> chicken model. It can also be used to study infection patterns of other pathogens, especially those that pose risks to public health. <b>RESEARCH HIGHLIGHTS</b>Bioluminescence imaging enabled real-time, noninvasive tracking of a bioluminescent APEC infection in embryonated chicken eggs over time.Bioluminescence signals showed contrasting patterns for dead and surviving embryos.The <i>ilux2</i>-APEC showed a higher luminoscore than <i>lux</i>ABCDE-APEC in inoculated embryonated chicken eggs.The <i>in ovo</i> bioluminescent signal from intact eggs effectively reflects the <i>ex ovo</i> signal following the take out of yolk and embryo. Bioluminescence imaging enabled real-time, noninvasive tracking of a bioluminescent APEC infection in embryonated chicken eggs over time. Bioluminescence signals showed contrasting patterns for dead and surviving embryos. The <i>ilux2</i>-APEC showed a higher luminoscore than <i>lux</i>ABCDE-APEC in inoculated embryonated chicken eggs. The <i>in ovo</i> bioluminescent signal from intact eggs effectively reflects the <i>ex ovo</i> signal following the take out of yolk and embryo.
DOI: 10.6084/m9.figshare.28573709.v2
title: Recombinant auto-bioluminescent <i>Escherichia coli</i> to monitor the progression of <i>Escherichia coli</i> infection in the embryonated chicken eggs

description: Avian pathogenic <i>Escherichia coli</i> (APEC) infections in poultry adversely affect health and production, with public health implications. This study assessed the potential of bioluminescence imaging for real-time, noninvasive tracking of microbial progression in 12-day-old chicken embryos inoculated with an APEC strain or its derivatives integrated either with <i>lux</i>ABCDE or <i>ilux2</i> operon. Eggs were imaged daily for bioluminescence detection, with dead embryos sampled immediately and survivors killed at 5-days post-inoculation (dpi). The eggs were opened, and egg contents were imaged for bioluminescence. Yolks were sampled for <i>E. coli</i> isolation and quantification. The results showed lethality rates of 100%, 93.3%, and 80% in embryos inoculated with native strain, <i>lux</i>ABCDE, or <i>ilux2,</i> respectively. Bioluminescence analysis showed increased bioluminescence signal strength over time preceding embryo death. Surviving embryos exhibited a sequential reduction in signal strength. A strong positive correlation was found between bioluminescence signal intensity <i>in ovo</i> and <i>ex ovo</i>, with <i>ilux2-</i>APEC-infected eggs showing a higher luminoscore than <i>lux</i>ABCDE-APEC. The <i>E. coli</i> load in yolks of APEC-inoculated eggs showed a positive trend over time. Overall, bioluminescence imaging of <i>ilux2</i> operon-labelled bacteria enabled more efficient real-time detection and monitoring of <i>E. coli in ovo</i>. Multiple imaging sessions on the same embryo throughout the experiment allowed precise monitoring of infection progression without sequential culling. This offers a controlled platform for evaluating antimicrobial treatment efficacy in an <i>in ovo</i> model that closely resembles an <i>in vivo</i> chicken model. It can also be used to study infection patterns of other pathogens, especially those that pose risks to public health. <b>RESEARCH HIGHLIGHTS</b>Bioluminescence imaging enabled real-time, noninvasive tracking of a bioluminescent APEC infection in embryonated chicken eggs over time.Bioluminescence signals showed contrasting patterns for dead and surviving embryos.The <i>ilux2</i>-APEC showed a higher luminoscore than <i>lux</i>ABCDE-APEC in inoculated embryonated chicken eggs.The <i>in ovo</i> bioluminescent signal from intact eggs effectively reflects the <i>ex ovo</i> signal following the take out of yolk and embryo. Bioluminescence imaging enabled real-time, noninvasive tracking of a bioluminescent APEC infection in embryonated chicken eggs over time. Bioluminescence signals showed contrasting patterns for dead and surviving embryos. The <i>ilux2</i>-APEC showed a higher luminoscore than <i>lux</i>ABCDE-APEC in inoculated embryonated chicken eggs. The <i>in ovo</i> bioluminescent signal from intact eggs effectively reflects the <i>ex ovo</i> signal following the take out of yolk and embryo.
DOI: 10.3535/dme-9eh-ffe
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x1j-5wy-1xr
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.28573709.v1
title: Recombinant autobioluminescent <i>Escherichia coli</i> to monitor the progression of <i>Escherichia coli</i> infection in the embryonated chicken eggs

description: Avian pathogenic <i>Escherichia coli</i> (APEC) infections in poultry adversely affect health and production, with public health implications. This study assessed the potential of bioluminescence imaging for real-time, noninvasive tracking of microbial progression in 12-day-old chicken embryos inoculated with an APEC strain or its derivatives integrated either with <i>lux</i>ABCDE or <i>ilux2</i> operon. Eggs were imaged daily for bioluminescence detection, with dead embryos sampled immediately and survivors killed at 5 days post inoculation (dpi). The eggs were opened, and egg contents were imaged for bioluminescence. Yolks were sampled for <i>E. coli</i> isolation and quantification. Results showed lethality rates of 100%, 93.3% and 80% in embryos inoculated with native strain, <i>lux</i>ABCDE or <i>ilux2,</i> respectively. Bioluminescence analysis showed increased bioluminescence signal strength over time preceding embryo death. Surviving embryos exhibited a sequential reduction in signal strength. A strong positive correlation was found between bioluminescence signal intensity <i>in ovo</i> and <i>ex ovo</i>, with <i>ilux2-</i>APEC infected eggs showing a higher luminoscore than <i>lux</i>ABCDE-APEC. The <i>E. coli</i> load in yolks of APEC-inoculated eggs showed a positive trend over time. Overall, bioluminescence imaging of <i>ilux2</i> operon labelled bacteria enabled more efficient real-time detection and monitoring of <i>E. coli in ovo</i>. Multiple imaging sessions on the same embryo throughout the experiment allow precise monitoring of infection progression without sequential culling. This offers a controlled platform for evaluating antimicrobial treatments’ efficacy in an <i>in ovo</i> model that closely resembles <i>in vivo</i> environment in chickens. It also bears the potential to study other pathogens’ infection patterns, especially those pose risks to public health.
DOI: 10.3535/c0v-vlw-2wr
title: Sus scrofa Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ccg-je5-5fn
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.5wynge
title: Occurrence Download

description: A dataset containing 31299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paralichthys albigutta",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31299 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022472-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9my-144-g5e
title: Thurmanniceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vqx-veg-703
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jyz-4y5-jbd
title: Balaenoptera acutorostrata Lacépède, 1804

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29038844
title: Differences in lesion development of slow- and fast-growing meat-type chickens after experimental challenge with <i>Enterococcus cecorum</i>

description: Field observations suggest genotype-associated differences in susceptibility to infection with <i>Enterococcus cecorum</i> (EC). We hypothesized that slow-growing (SG) chickens show less clinical signs and reduced lesions compared to fast-growing (FG) chickens after experimental challenge with EC. At 1-day post-hatch (dph), 97 FG and 97 SG chickens were randomly assigned to four groups: control, SG (CSG), control, FG (CFG), EC-inoculated, SG (ESG), and EC-inoculated, FG (EFG). After oral inoculation with 10<sup>7</sup> colony forming units EC or mock inoculation with physiological saline, chickens were monitored for clinical signs and samples were collected weekly for further analysis via ELISA, real-time PCR, and flow cytometric analysis. The final necropsy of 40 chickens per group was carried out at 43/44 dph. Clinical signs and pathological findings were observed in a reduced number of chickens in group ESG compared to EFG. Extra-intestinal colonization with EC at 43/44 dph was significantly reduced in group ESG compared to EFG (<i>P</i> &lt; 0.05). Circulating heterophils and monocytes were significantly increased in groups ESG and EFG compared to the control groups (<i>P</i> &lt; 0.05). Additionally, circulating monocytes were increased and heterophil/lymphocyte (H/L) ratios were decreased in SG chickens compared to FG chickens. We may speculate that SG chickens were less affected by the EC-associated disease due to a more efficient innate immune response and may more vigorously control extra-intestinal colonization after translocation from the intestine. Overall, the use of slow-growing chickens may reduce the incidence of the EC-associated disease in meat-type chickens and therefore increase overall health performance.