cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/jv1-pmw-k4z
title: †Gryphaea Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16894626
title: Shapefiles of Neotropical Euglossini distribution points and areas of endemism (3-degree and 4-degree).

description: This dataset provides geospatial shapefiles detailing the distribution of Neotropical orchid bees (tribe Euglossini) and their identified areas of endemism. It comprises 4,317 unique occurrence records, meticulously compiled from major biodiversity databases including the Moure Bee Catalogue, EUGCOMM, GBIF, and SpeciesLink. Areas of endemism were delimited using the NDM/VNDM software, applying two distinct grid cell sizes: 3-degree and 4-degree resolutions. This comprehensive dataset offers critical insights for biogeographical research, conservation planning, and understanding spatial patterns of biodiversity within the Neotropical region.
DOI: 10.6084/m9.figshare.29561519.v3
title: Supplementary files for the paper "Identifying associations between maize leaf transcriptome and bacteriome during different diurnal periods"

description: Bacteria that live on plant leaves, known as the phyllosphere microbiome, play important roles in plant health. Both the plant and these bacteria follow daily cycles, known as circadian rhythms, and are affected by changes from day to night. However, we still don’t fully understand how the plant and its microbes interact throughout the day.In this study, we looked at corn plants (maize) grown in the field and collected data from both the plant's gene activity and the types of bacteria living on its leaves. We focused on two specific times: midday and midnight.We found that the plant's genes behaved as expected, showing clear changes between day and night. Groups of genes that changed together were linked to important functions like handling heat, making energy through photosynthesis, and working with DNA and RNA.When we looked at the bacteria on the leaves, we didn’t see big differences in the number or types of bacteria (alpha diversity) between day and night. But we did find that the overall makeup of the bacterial community (beta diversity) shifted depending on the time of day. Some key types of bacteria were only found during the day or only at night, suggesting they might play different roles depending on the time.We also found t a larger number of associations between plant genes and bacteria at night. In particular, some plant genes that control daily rhythms were closely linked to specific types of bacteria.Overall, our results show that there are daily patterns in how corn plants and their leaf bacteria interact, and that the plant’s internal clock might help shape which bacteria are present and what they do.
DOI: 10.3535/3z2-ddd-219
title: Ostrea Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29561519.v2
title: Description of supplementary files for the paper "Identifying associations between maize leaf transcriptome and bacteriome during different diurnal periods"

description: Bacteria that live on plant leaves, known as the phyllosphere microbiome, play important roles in plant health. Both the plant and these bacteria follow daily cycles, known as circadian rhythms, and are affected by changes from day to night. However, we still don’t fully understand how the plant and its microbes interact throughout the day.In this study, we looked at corn plants (maize) grown in the field and collected data from both the plant's gene activity and the types of bacteria living on its leaves. We focused on two specific times: midday and midnight.We found that the plant's genes behaved as expected, showing clear changes between day and night. Groups of genes that changed together were linked to important functions like handling heat, making energy through photosynthesis, and working with DNA and RNA.When we looked at the bacteria on the leaves, we didn’t see big differences in the number or types of bacteria (alpha diversity) between day and night. But we did find that the overall makeup of the bacterial community (beta diversity) shifted depending on the time of day. Some key types of bacteria were only found during the day or only at night, suggesting they might play different roles depending on the time.We also found t a larger number of associations between plant genes and bacteria at night. In particular, some plant genes that control daily rhythms were closely linked to specific types of bacteria.Overall, our results show that there are daily patterns in how corn plants and their leaf bacteria interact, and that the plant’s internal clock might help shape which bacteria are present and what they do.
DOI: 10.3535/mpb-ynk-dq1
title: †Siderolites calcitrapoides Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/thc-54d-xe2
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2yh-kqn-3hn
title: †Spirifer Sowerby, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5n2-rh4-96q
title: †Joannites cymbiformis (Wulfen, 1793)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5rv-j7z-vcm
title: †Paracladiscites timidus Mojsisovics, 1896

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1jn-3ed-2gj
title: Salenia Gray, 1835

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5m7-b8q-cwf
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8hb-30h-q9h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qmd-d9b-j5e
title: †Fenestella Lonsdale, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g8b-w38-whc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1me-y4y-ejv
title: Anthozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a4h-7qt-qxa
title: †Lunulites voigti Buge, 1973

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j45-v52-njy
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4xd-4yz-xwy
title: †Chicoreus timorensis (Tesch, 1915)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zbx-wmm-h9y
title: Ranunculus polyanthemos subsp. nemorosus (DC.) Schübl. & G. Martens

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xjp-sxw-hga
title: †Sphenia marci Koperberg, 1931

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h5p-ydr-pmt
title: Ranunculus L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jab-7x9-hh9
title: †Micraster L. Agassiz, 1835

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7wm-4s6-rfe
title: Paracladiscites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9j3-q39-0a4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gsj-60d-gsc
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t96-7bz-09k
title: Cladiscites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/83b-a5j-k5a
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ep7-bwt-9xn
title: †Melongena gigas (K. Martin, 1883)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ghz-5p7-tfz
title: †Trochosmilia granifera Haime, 1854

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wy0-3jh-xtb
title: †Agathiceras tornatum Gemmellaro, 1887

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vv4-r00-k9p
title: Stenolaemata Borg, 1926

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wzt-tes-akh
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ym2-b6m-dyh
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9jm-mjt-b1r
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wpm-vss-w4q
title: Gutturnium muricinum (Röding, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9nn-2yy-952
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n1p-7p2-wvm
title: Bathytormus radiatus (G. B. Sowerby I, 1825)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ay4-1kq-2s2
title: †Hemiaster madagascariensis Cottreau, 1922

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9ar-d62-pw8
title: †Orthocerida Kuhn, 1940

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m8h-j37-krj
title: †Strophomenata Williams et al., 1996

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.8f84bs
title: Occurrence Download

description: A dataset containing 613 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Esox lucius",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 613 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019135-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/bma-6aq-wev
title: Acer campestre L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/svk-8p1-dzg
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.28hm3h
title: Occurrence Download

description: A dataset containing 42283 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de artrópodos del Museo de Historia Natural de la Pontificia Universidad Javeriana"
 ]
}

 The dataset includes 42283 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003457-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eap67v
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode is one of (mnhn, smf, fishbase)",
 "TaxonKey is Coptodon rheophila (Daget, 1962)"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006220-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vr0xad
title: Occurrence Download

description: A dataset containing 561140260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 561140260 records from 12646 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035020-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1395627.10fu
title: SH1395627.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395629.10fu
title: SH1395629.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395630.10fu
title: SH1395630.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395632.10fu
title: SH1395632.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395634.10fu
title: SH1395634.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395638.10fu
title: SH1395638.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395639.10fu
title: SH1395639.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395642.10fu
title: SH1395642.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395647.10fu
title: SH1395647.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.8qvrxd
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"MEX.26.58_2","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006047-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.