cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3597656_d14.v1
title: Additional file 19: of A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton

description: Title: The 105 Upland cotton cultivars used for finding the efficacy of deletion marker allele CFBid0004 in this study. Description of data: This table contains 105 NCVT cultivars name. The historic phenotypic data of those 105 cultivars were used to find out the practical efficacy of the InDel marker CFBid0004 in Upland cotton breeding. (XLSX 11Â kb)
DOI: 10.15468/dl.qnjusz
title: Occurrence Download

description: A dataset containing 1001 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mushroom (KIDR-MR)"
 ]
}

 The dataset includes 1001 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037782-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3598181_d3.v1
title: Additional file 4 of Discrete distributional differential expression (D3E) - a tool for gene expression analysis of single-cell RNA-seq data

description: Parameters for the Islam et al. data without degradation rates. Parameters for the 12,135 genes that were expressed in both cell types. (TSV 2631 kb)
DOI: 10.6084/m9.figshare.c.3598181_d7.v1
title: Additional file 3 of Discrete distributional differential expression (D3E) - a tool for gene expression analysis of single-cell RNA-seq data

description: Table S1. Expression levels for the 90 genes from the 2-cell and 4-cell mouse embryos as quantified using either qPCR or RNA-seq [6]. The last six columns indicate the genes that were identified as differentially expressed by different DE algorithms as well as a t-test for the qPCR data. (TSV 11.7 kb)
DOI: 10.6084/m9.figshare.c.3598673_d5.v1
title: Additional file 6: of SNP-markers in Allium species to facilitate introgression breeding in onion

description: Table S6. Positions and Chi-square values to expected segregation ratios for SNPs markers segregating in the CCxRF_new population based on RF-SNP markers. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.c.3598661_d12.v1
title: Additional file 5: Table S4. of Genome-wide identification and characterization of auxin response factor (ARF) family genes related to flower and fruit development in papaya (Carica papaya L.)

description: The saw data of the CpARF family during the different flower developmental stages. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3598673_d6.v1
title: Additional file 2: of SNP-markers in Allium species to facilitate introgression breeding in onion

description: Table S2. Results of Blast2Go to obtain functional anotation of RF contigs containing SNPs that were selected for the KASP platform. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.c.3598661_d13.v1
title: Additional file 9: Table S6. of Genome-wide identification and characterization of auxin response factor (ARF) family genes related to flower and fruit development in papaya (Carica papaya L.)

description: The saw data of the CpARF family during the different fruit developmental stages. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3598673_d7.v1
title: Additional file 3: of SNP-markers in Allium species to facilitate introgression breeding in onion

description: Table S3. Sequences flanking reliable single nucleotide polymorphisms (SNPs) in onion cDNA al_contigs conducive for genotyping using the KASP platform. (XLSX 1413Â kb)
DOI: 10.6084/m9.figshare.c.3598718_d2.v1
title: Additional file 5: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

description: Evolutionary changes of gene sets described by the four parameters of conservation explained in the manuscript. Sheet 1: results using tissue gene sets. Sheet 2: results using pathway gene sets. Sheet 3: results using disease gene sets. (XLS 552 kb)
DOI: 10.6084/m9.figshare.c.3598724_d1.v1
title: Additional file 1: of Patch testing in Iranian children with allergic contact dermatitis

description: Data set on gender, and presence of personal or family history of atopy. (SAV 2 kb)
DOI: 10.6084/m9.figshare.c.3598724_d2.v1
title: Additional file 2: of Patch testing in Iranian children with allergic contact dermatitis

description: Data set on age, gender, type of allergen, location of contact dermatitis. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3598733_d1.v1
title: Additional file 1: of Transgelin gene is frequently downregulated by promoter DNA hypermethylation in breast cancer

description: Expression changes upon AZA treatments. Probe IDs, gene names, and fold change ratios of the genes altered upon AZA treatment in each cell line at 1.5 fold and Pâ
DOI: 10.6084/m9.figshare.c.3598718_d3.v1
title: Additional file 1: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

description: Gene co-expression and connectivity. List of humans and mice homologous genes annotated with HGNC symbols together with further information retrieved from Biomart Ensembl and from the analysis of co-expression maps (Entrez IDs, Homology Type, dN/dS, number of homologs from the top 5% co-expressed genes in humans and mice, number of commonly co-expressed genes, connectivity values in humans and mice, differential connectivity). (XLS 3371 kb)
DOI: 10.6084/m9.figshare.c.3598733_d2.v1
title: Additional file 3: of Transgelin gene is frequently downregulated by promoter DNA hypermethylation in breast cancer

description: Final gene lists altered upon AZA treatments only in breast cancer cell lines. Probe IDs, gene names, accession numbers and fold change ratios of the genes altered upon AZA treatment, in each breast cancer cell line at 1.5 fold and P
DOI: 10.6084/m9.figshare.c.3598718_d4.v1
title: Additional file 6: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

description: Novel candidate conserved homologs associated with genes sets. Sheet 1: results using tissue gene sets. Sheet 2: results using pathway gene sets. Sheet 3: results using disease gene sets. Sheets 4, 5 and 6: Same analysis as sheet 1, 2 and 3 but using one-to-one homologous genes only. (XLS 11362 kb)
DOI: 10.23668/psycharchives.4481
title: Dataset: Top-down and bottom-up influences on dynamic visual attention: Attentional Capture in Multiple Object Tracking

description: Multiple Object Tracking (MOT) is assumed to be handled by bottom-up (e.g. Pylyshsyn & Storm, 1988) or top-down processes of selection (e.g. Yantis, 1992) or both (e.g. Oksama & Hyönä, 2008) – depending on the model assumed. The Attentional Capture (AC) paradigm (e.g. Yantis & Jonides, 1984) is regularly employed to demonstrate influences of bottom-up and/or top-down attentional control. It has up to now not been used to assess influences of irrelevant stimuli in MOT. We investigated whether AC does occur in MOT: Are irrelevant stimuli processed at all in dynamic attentional tasks? We found that sudden onset singletons were effective in lowering probe detection thus demonstrating AC. Tracking performance as dependent measure was not affected. The AC effect persisted in conditions of higher tracking load (experiment 2) and was dramatically increased in lower presentation frequency (experiment 3). Tracking performance was shown to suffer only when irrelevant distractors were presented serially with very short time gaps in between thus effectively disturbing reengaging attention on the tracking set (experiment 4). We discuss that a stable representation of the tracking array in visual working memory and rapid dis- and reengagement of attention allow managing strong disruptions of tracking.
DOI: 10.23668/psycharchives.4483
title: Dataset for: Perception of Styles of Discourse in a Scientific Debate
title: Dataset Tkotz et al. (2020) - Perception of Styles of Discourse in a Scientific Debate

description: Dateset for: Tkotz, Kienhues, Jucks and Bromme (2020). Keep Calm in Heated Debates: How People Perceive Different Styles of Discourse in a Scientific Debate. Front. Educ. doi: 10.3389/feduc.2020.572503
DOI: 10.6084/m9.figshare.c.3599177_d1.v1
title: Additional file 3: of Estimating distributions of health state severity for the global burden of disease study

description: NESARC Model Results. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3599177_d2.v1
title: Additional file 4: of Estimating distributions of health state severity for the global burden of disease study

description: NSMHWB 12Â month Model Results. (XLSX 10Â kb)
DOI: 10.23668/psycharchives.4485
title: The ZPID Lockdown Measures Dataset for Germany

description: The outbreak of the COVID-19 pandemic has prompted the German government and the 16 German federal states to announce a variety of public health measures in order to suppress the spread of the coronavirus. These non-pharmaceutical measures intended to curb transmission rates by increasing social distancing (i.e., diminishing interpersonal contacts) which restricts a range of individual behaviors. These measures span moderate recommendations such as physical distancing, up to the closures of shops and bans of gatherings and demonstrations. The implementation of these measures are not only a research goal for themselves but have implications for behavioral research conducted in this time (e.g., in form of potential confounder biases). Hence, longitudinal data that represent the measures can be a fruitful data source. The presented data set contains data on 14 governmental measures across the 16 German federal states. In comparison to existing datasets, the data set at hand is a fine-grained daily time series tracking the effective calendar date, introduction, extension, or phase-out of each respective measure. Based on self-regulation theory, measures were coded whether they did not restrict, partially restricted or fully restricted the respective behavioral pattern. The time frame comprises March 08, 2020 until May 15, 2020. The project is an open-source, ongoing project with planned continued updates in regular (approximately monthly) intervals.
description: New variables include restrictions on travel and gastronomy. The variable trvl (travel) comprises the following categories: fully restricted (=2) reflecting a potential general ban to travel within Germany (except for sound reasons like health or business); partially restricted (=1): travels are allowed but may be restricted through prohibition of accommodation or entry ban for certain groups (e.g. people from risk areas); free (=0): no travel and accommodation restrictions in place). The variable gastr (gastronomy) comprises: fully restricted (=2): closure of restaurants or bars; partially restricted (=1): Only take-away or food delivery services are allowed; free (=0): restaurants are allowed to open without restrictions). Further, the variables msk (recommendations to wear a mask) and zoo (restrictions of zoo visits) have been adjusted.
DOI: 10.6084/m9.figshare.c.3599129_d11.v1
title: MOESM2 of Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea

description: Additional file 2. An integrated table of all obtained genomic, transcriptomic and proteomic data as well as data obtained and published in previous studies (Peano et al., 2012; Marcellin et al., 2013, Li et al., 2011).
DOI: 10.6084/m9.figshare.c.3599177_d3.v1
title: Additional file 5: of Estimating distributions of health state severity for the global burden of disease study

description: NSMHWB 1Â month Model Results. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3599501_d5.v1
title: Additional file 10: Table S8. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

description: Comparison of NF10547 high confidence Tnt1 insertion loci identified from WGS vs TAIL-PCR. (XLS 33Â kb)
DOI: 10.6084/m9.figshare.c.3599501_d8.v1
title: Additional file 8: Table S6. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

description: List of low confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF10547 by WGS. (XLS 141Â kb)
DOI: 10.5281/zenodo.14509200
title: THE INFLUENCE OF SOCIAL MEDIA ON COMMUNICATION
DOI: 10.5281/zenodo.14509201
title: THE INFLUENCE OF SOCIAL MEDIA ON COMMUNICATION
DOI: 10.6084/m9.figshare.c.3599768_d2.v1
title: Additional file 5: of Novel microRNA discovery using small RNA sequencing in post-mortem human brain

description: A 99 Ă  93 table with raw read counts of the 99 putative novel miRNA results, for each of the 93 samples. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3599768_d4.v1
title: Additional file 2: of Novel microRNA discovery using small RNA sequencing in post-mortem human brain

description: Contains quality control information including the average read quality before and after quality and length filtering, the number of reads used in miRNA discovery and in differential expression analyses, and the number of reads removed for each length and quality filtering step. Length filtering used 15 and 27 nucleotides as threshold for the differential expression analysis and a more strict 18 and 23 nucleotides for the miRDeep* miRNA discovery. The numbers of reads filtered are included for all four thresholds. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3599768_d5.v1
title: Additional file 8: of Novel microRNA discovery using small RNA sequencing in post-mortem human brain

description: Contains alignment information from good-quality mature sequence alignments of the 99 putative novel miRNAs to miRBase mature sequence entries. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3599768_d6.v1
title: Additional file 6: of Novel microRNA discovery using small RNA sequencing in post-mortem human brain

description: Contains summary information of each of the 99 novel putative miRNAs and the 30 miRNAs results from public data, in separate tabs. The following information is included in this file: mature and hairpin sequence loci, miRDeep* score, expression, the number of good-quality alignments to miRBase entries, the name of the miRBase entry with the best alignment, the name and distance (basepairs) of any gene within 1000 basepairs of the novel miRNA, adjusted p-value and log2 fold-change of the differential expression analyses (C v. HD, C v. PD), whether the novel miRNA overlaps an entry within the Londin et al. novel miRNA dataset, which entries of the HD/PD data set and the public data set results match by location, which novel miRNAs were experimentally validated, mature and hairpin sequence, and predicted hairpin secondary structure. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3599768_d7.v1
title: Additional file 1: of Novel microRNA discovery using small RNA sequencing in post-mortem human brain

description: Provides information on each of the 93 samples used in this study. This information includes ID, type (Control/HD/PD), PMI (Post-mortem-interval), age at death, sex, batch, brain bank, and cause of death. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.28045766
title: Edata-Function-Table-OPCML-OV-0610-4count-PMrelscore.txt

description: Enriched Function
DOI: 10.6084/m9.figshare.28045766.v1
title: Edata-Function-Table-OPCML-OV-0610-4count-PMrelscore.txt

description: Enriched Function
DOI: 10.6084/m9.figshare.c.3599768_d8.v1
title: Additional file 7: of Novel microRNA discovery using small RNA sequencing in post-mortem human brain

description: A table containing information on the qRT-PCR performed with seven novel miRNAs and two known miRNAs. Per miRNA, this information includes mean CT, range of CT, cDNA dilution, the number of samples (of 12) with CTâ
DOI: 10.6084/m9.figshare.c.3600110_d1.v1
title: MOESM2 of Thermodynamically optimal whole-genome tiling microarray design and validation

description: Additional file 2. Assembled genome sequences for E. coli MG1655 and Agrobacterium tumefaciens C58. Two FASTA files containing the assembled genomic sequences are provided in this compressed ZIP archive.
DOI: 10.6084/m9.figshare.c.3600110_d2.v1
title: MOESM1 of Thermodynamically optimal whole-genome tiling microarray design and validation

description: Additional file 1. Picky analysis results for a previously designed tiling microarray. The tiling microarray created by Yu, et al. [21] was designed using a pipeline [22] that depends on BLAST for sequence-level probe specificity screening. This compressed ZIP archive contains the summary (W83.report) and detail analysis (W83.picky) produced by Picky for this microarray.
DOI: 10.6084/m9.figshare.c.3600113_d1.v1
title: Additional file 2: Table S2. of Sjögren’s syndrome-associated microRNAs in CD14+ monocytes unveils targeted TGFβ signaling

description: MicroRNA microarray data. (XLSX 4872 kb)
DOI: 10.6084/m9.figshare.28001450.v15
title: GBM-Reservoir: Dataset and Segmentations

description: In this repository, we present a brain tumor database collection comprising 23,049 samples, with each sample including four different types of MRI brain scans: FLAIR, T1, T1ce, and T2. Additionally, two segmentation masks (ground truth) are provided for each sample. The first mask is the raw output from the registration process, while the second is a post-processed version of the first, designed to simplify interpretation and optimize it for network training. These samples have been acquired via registration process of 438 samples available at the moment of registration from the original dataset provided by the BraTS 2022 Challenge. Registering each pair of existing brain scans results in two additional scans that retain a similar brain shape while featuring varying tumor locations. Consequently, by registering all possible pairs, a dataset originally consisting of n samples can be expanded to n<sup>2</sup> samples. The original dataset was collected from different institutions under standard clinical conditions, but with different equipment and imaging protocols. As a result, the image quality is heterogeneous, reflecting the diversity of clinical practices across institutions. This dataset can be utilized for various tasks, such as developing fully automated segmentation algorithms for new, unseen brain tumor cases, particularly through deep learning-based approaches, since ground truth is provided for each sample.
DOI: 10.6084/m9.figshare.25036940
title: <b>Plant phylogeny, traits and fungal community composition as drivers of plant-soil feedbacks</b>

description: Data associated with the manuscript:<br>Plant phylogeny, traits and fungal community composition as drivers of plant-soil feedbacks<br>File: 'Supplementary Data File Biomass raw data' contains the biomass data associated with the focal and conditioning plant species within the PSF experiment. This data was used to calculate the PSF values used in this study.File: 'Supplementary Data File Collated Information' contains all of the variables used to try and explain variability in PSFs, including information on plant traits, rhizosphere fungal communities and phylogenetic distance values.
DOI: 10.6084/m9.figshare.c.3600356_d4.v1
title: Additional file 2: of IPC – Isoelectric Point Calculator

description: IPC peptide dataset (16,882 peptides, derived from Gauci et al. PHENYX and SEQUEST after 99 % redundancy removal) – fasta formatted. (FASTA 999 kb)
DOI: 10.15468/dl.bw9uh8
title: Occurrence Download

description: A dataset containing 173871 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamopyrgus antipodarum (J.E.Gray, 1843)"
 ]
}

 The dataset includes 173871 records from 451 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037779-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3600380_d2.v1
title: Additional file 1: Table S1. of Disorders of sex development: insights from targeted gene sequencing of a large international patient cohort

description: DSD gene variants. Each variant found in a diagnostic gene (after the filtering and curation process) is shown. In some cases where the gene is inherited in an autosomal recessive manner, two variants are grouped together. Inheritance has been indicated where familial samples were available: negative indicates negative for variant and N/A sample not available. De novo events have only been noted where both parental samples were available and found to be negative for the change. Previously reported refers to a variant being described in either ClinVar, HGMD, or a publication in a peer-reviewed journal via a PubMed search. Variants were classified consistent with previous MPS publications of DSD cohorts [8, 10] which were based on ACMG guidelines [15]. VUS were called for three reasons: 1 = fits phenotype but predicted to be benign; 2 = damaging but doesn’t fit phenotype; or 3 = variant in the AR repetitive region. Patients marked with an asterisk were identified to have two or more diagnostic gene variants. Null variants (frameshifts, splice sites mutations, and premature stop codons) are shown in bold. Patients have been classified based on clinical notes provided, according to the recommended classification of DSD in the Chicago consensus report. Classifications: CGD complete gonadal dysgenesis, DASA disorders of androgen synthesis or action, DSD DSD of “unknown” origin; hypospadias, LCH Leydig cell hypoplasia, OT ovotesticular DSD, PGD partial gonadal dysgenesis, PMDS persistent Müllerian duct syndrome; syndromic, T testicular DSD. Related affected individuals are indicated. File is in Excel spreadsheet format. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3600689_d1.v1
title: Additional file 1: of Biomarkers of cardiovascular injury and stress are associated with increased frequency of ventricular ectopy: a population-based study

description: Data set. (XLSX 60 kb)
DOI: 10.5281/zenodo.13293332
title: AckSent: Human Annotated Dataset of Support and Sentiments in Dissertation Acknowledgments

description: This data is supplementary to the paper:



Manika Lamba, You Peng, Sophie Nikolov, and J. Stephen Downie. 2024. AckSent: Human Annotated Dataset of Support and Sentiments in Dissertation Acknowledgments. In The 2024 ACM/IEEE Joint Conference on Digital Libraries (JCDL ’24), December 2024, Hong Kong, China. ACM, New York, NY, USA, 5 pages. https://doi.org/10.1145/3677389.3702594
DOI: 10.5281/zenodo.13293333
title: AckSent: Human Annotated Dataset of Support and Sentiments in Dissertation Acknowledgments

description: This data is supplementary to the paper "AckSent: Human Annotated Dataset of Support and Sentiments in Dissertation Acknowledgments" .
DOI: 10.5281/zenodo.14038803
title: AckSent: Human Annotated Dataset of Support and Sentiments in Dissertation Acknowledgments

description: This data is supplementary to the paper "AckSent: Human Annotated Dataset of Support and Sentiments in Dissertation Acknowledgments" .
DOI: 10.5281/zenodo.14509104
title: AckSent: Human Annotated Dataset of Support and Sentiments in Dissertation Acknowledgments

description: This data is supplementary to the paper:



Manika Lamba, You Peng, Sophie Nikolov, and J. Stephen Downie. 2024. AckSent: Human Annotated Dataset of Support and Sentiments in Dissertation Acknowledgments. In The 2024 ACM/IEEE Joint Conference on Digital Libraries (JCDL ’24), December 2024, Hong Kong, China. ACM, New York, NY, USA, 5 pages. https://doi.org/10.1145/3677389.3702594
DOI: 10.6084/m9.figshare.c.3600899_d1.v1
title: Additional file 6: Table S6. of Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

description: DAVID Gene Ontology Biological Processes analysis results for downregulated microRNA/upregulated mRNA target pairs. (XLSX 53Â kb)