cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24977351.v1
title: The complete mitochondrial genome and phylogenetic analysis of hydrozoan jellyfish <i>Eirene ceylonensis</i> (Cnidaria, Hydrozoa, Eirenidae) in the coastal sea of Qinhuangdao, China

description: <i>Eirene ceylonensis,</i> a hydrozoan jellyfish species with a complex polymorphic life cycle, is widely distributed in the Chinese coastal sea. In this study, we conducted sequencing and analysis of the first complete mitochondrial genome of <i>E. ceylonensis,</i> obtained from the coastal sea of Qinhuangdao, China. The linear mitochondrial genome is 14,997 bp in length with the overall AT content being 72.8%, encoding 13 protein-coding genes (PCGs), two transfer RNA (tRNA) genes (<i>tRNA-Met</i> and <i>tRNA-Trp</i>) and two ribosomal RNA (rRNA) genes (<i>rrnS</i> and <i>rrnL</i>). Phylogenetic analysis of 13 PCGs suggests that the <i>E. ceylonensis</i> is closely related to <i>Laomedea flexuosa</i>. The availability of the complete mitochondrial genome of <i>E. ceylonensis</i> will be useful for studying the evolutionary relationships of hydrozoan jellyfish species.
DOI: 10.6084/m9.figshare.24977354
title: The complete chloroplast genome sequence of <i>Rosa</i> ‘Limoncello’ (Rosales: Rosaceae)

description: <i>Rosa</i> ‘Limoncello’ finds applications in gardening and landscaping. In this study, we assembled and annotated the complete chloroplast genome of this variety for the first time. The length of its chloroplast genome was 156,493 bp, containing two short inverted repeat regions of 26,052 bp, each separated by a large single-copy region of 85,649 bp and a small single-copy region of 18,740 bp. The chloroplast DNA of <i>R.</i> ‘Limoncello’ consisted of 135 genes, including 90 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. On comparing the complete chloroplast sequence of <i>R.</i> ‘Limoncello’ with that of other <i>Rosa</i> species, <i>R.</i> ‘Limoncello’ was found to be closely related to <i>Rosa cymosa</i>. Thus, information on the chloroplast genome sequence of this rose variety can facilitate phylogenetic studies of the genus <i>Rosa</i>.
DOI: 10.6084/m9.figshare.24977354.v1
title: The complete chloroplast genome sequence of <i>Rosa</i> ‘Limoncello’ (Rosales: Rosaceae)

description: <i>Rosa</i> ‘Limoncello’ finds applications in gardening and landscaping. In this study, we assembled and annotated the complete chloroplast genome of this variety for the first time. The length of its chloroplast genome was 156,493 bp, containing two short inverted repeat regions of 26,052 bp, each separated by a large single-copy region of 85,649 bp and a small single-copy region of 18,740 bp. The chloroplast DNA of <i>R.</i> ‘Limoncello’ consisted of 135 genes, including 90 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. On comparing the complete chloroplast sequence of <i>R.</i> ‘Limoncello’ with that of other <i>Rosa</i> species, <i>R.</i> ‘Limoncello’ was found to be closely related to <i>Rosa cymosa</i>. Thus, information on the chloroplast genome sequence of this rose variety can facilitate phylogenetic studies of the genus <i>Rosa</i>.
DOI: 10.6084/m9.figshare.25053266
title: Complete chloroplast genome of <i>Petrocosmea qinlingensis</i> (Gesneriaceae), a protected wild plant in the Qinling mountains

description: <i>Petrocosmea qinlingensis</i> is a protected wild plant endemic in China, inhabiting low-light limestone cliffs but the complete chloroplast genome has not been reported. In this study, we first sequenced and assembled the complete chloroplast genome of <i>P. qinlingensis</i>. The total size of this genome was 153,865 bp, including a large single-copy (LSC) region (84,737 bp), a small single-copy (SSC) region (18,244 bp), and two inverted repeats (IRs) regions (25,442 bp). This genome encoded 111 uniquegenes, consisted of 77 protein-coding genes, four ribosomal RNA genes, and 30 transfer RNA genes. Phylogenomic analysis based on the chloroplast protein-coding genes and showed that the genus <i>Petrocosmea</i> was the closest relative to <i>Raphiocarpus</i>. Our results will support further phylogeographic, population genetic studies of this species.
DOI: 10.6084/m9.figshare.25053266.v1
title: Complete chloroplast genome of <i>Petrocosmea qinlingensis</i> (Gesneriaceae), a protected wild plant in the Qinling mountains

description: <i>Petrocosmea qinlingensis</i> is a protected wild plant endemic in China, inhabiting low-light limestone cliffs but the complete chloroplast genome has not been reported. In this study, we first sequenced and assembled the complete chloroplast genome of <i>P. qinlingensis</i>. The total size of this genome was 153,865 bp, including a large single-copy (LSC) region (84,737 bp), a small single-copy (SSC) region (18,244 bp), and two inverted repeats (IRs) regions (25,442 bp). This genome encoded 111 uniquegenes, consisted of 77 protein-coding genes, four ribosomal RNA genes, and 30 transfer RNA genes. Phylogenomic analysis based on the chloroplast protein-coding genes and showed that the genus <i>Petrocosmea</i> was the closest relative to <i>Raphiocarpus</i>. Our results will support further phylogeographic, population genetic studies of this species.
DOI: 10.6084/m9.figshare.25053269
title: The complete chloroplast genome sequence of <i>Melochia corchorifolia</i> Linnaeus, 1753 (Sterculiaceae)

description: <i>Melochia corchorifolia</i> Linnaeus, 1753, is a weedy tropical plant of the Sterculiaceae family and has medicinal value. We sequenced the complete chloroplast genome of <i>M. corchorifolia</i> using Illumina high-throughput sequencing and examined phylogenetic relationships with closely related species. The assembled chloroplast genome of <i>M. corchorifolia</i> was 163,693 bp long and contained a pair of inverted repeats of 29,729 bp, separated by a large single-copy sequence of 84,350 bp and a small single-copy region of 19,885 bp. A total of 136 genes were annotated across the entire chloroplast genome, including 37 transfer RNA, 8 ribosomal RNA, and 91 protein-coding genes. The GC content of the complete cp genome was 37.27%. The phylogenetic tree indicated that <i>M. corchorifolia</i> is closely related to <i>Melochia pyramidata</i> (Malvaceae). These results would provide useful information for future phylogenetic, taxonomic, and evolutionary studies on Sterculiaceae and Malvaceae.
DOI: 10.6084/m9.figshare.25053269.v1
title: The complete chloroplast genome sequence of <i>Melochia corchorifolia</i> Linnaeus, 1753 (Sterculiaceae)

description: <i>Melochia corchorifolia</i> Linnaeus, 1753, is a weedy tropical plant of the Sterculiaceae family and has medicinal value. We sequenced the complete chloroplast genome of <i>M. corchorifolia</i> using Illumina high-throughput sequencing and examined phylogenetic relationships with closely related species. The assembled chloroplast genome of <i>M. corchorifolia</i> was 163,693 bp long and contained a pair of inverted repeats of 29,729 bp, separated by a large single-copy sequence of 84,350 bp and a small single-copy region of 19,885 bp. A total of 136 genes were annotated across the entire chloroplast genome, including 37 transfer RNA, 8 ribosomal RNA, and 91 protein-coding genes. The GC content of the complete cp genome was 37.27%. The phylogenetic tree indicated that <i>M. corchorifolia</i> is closely related to <i>Melochia pyramidata</i> (Malvaceae). These results would provide useful information for future phylogenetic, taxonomic, and evolutionary studies on Sterculiaceae and Malvaceae.
DOI: 10.6084/m9.figshare.24962342.v1
title: The complete mitochondrial genome of Slaty-backed Forktail, <i>Enicurus schistaceus</i> (Passeriformes: Muscicapidae) and phylogenetic analysis

description: The complete mitogenome of the Slaty-backed Forktail (<i>Enicurus schistaceus</i>) was first sequenced using next-generation sequencing. It was 17,112 bp long, with a base composition of 14.17% G, 31.77% C, 30.73% A, and 23.33% T and an AT content of 54.06%. Similar to other mitochondrial genomes within the Muscicapidae family, <i>E. schistaceus</i> exhibited a relatively consistent mitogenome arrangement; it consisted of 22 tRNA genes, two rRNA genes, 13 protein-coding genes, and one control region. Notably, <i>ND6</i> and eight tRNA genes were encoded on the light strand. Phylogenetic analysis of the 12 Muscicapidae mitogenomes substantiated the monophyly of all genera, including <i>E. schistaceus</i>. Furthermore, the analysis demonstrated a close relationship between <i>Enicurus</i> and <i>Myophonus</i>.
DOI: 10.6084/m9.figshare.24711692
title: The complete mitochondrial genome of the <i>Tanichthys flavianalis</i> (Cypriniformes: Tanichthyidae) and its phylogeny

description: In the present study, we have sequenced, annotated and characterized the complete mitogenome of <i>Tanichthys flavianalis</i> Li, Liao & Shen, 2022, which is an endemic minnow to Hainan Province, China. The entire mitogenome size is 16,545 bp, containing 37 genes coding for 13 mitochondrial proteins, 22 tRNAs, 2 rRNAs, and one putative control region. It has the typical fish mitochondrial gene arrangement, though with 9 gene overlaps and 17 intergenic spacers scattering throughout the mitogenome, and a high A + T bias (60.8%) comparing to other Cyprinids. ATG is used as the start codon in most mitochondrial protein coding genes (PCGs) except for <i>cox1</i> which uses GTG, whereas the canonical TAA/TAG are prevailing stop codons except for <i>cox2</i>, <i>cox3</i>, <i>nad4</i> and <i>cytb</i>. Phylogenetic analyses with other reported species from Tanichyidae were conducted using IQ-TREE and MrBayes, based on the concatenated 13 PCGs. The results clustered <i>T. flavinalis</i> with the newly described <i>T. albiventris</i> Li Bohlen & Liao, 2022, and proved the reciprocally monophyletic relationship between Chinese and Vietnamese <i>Tanichthys</i>.
DOI: 10.6084/m9.figshare.24711692.v1
title: The complete mitochondrial genome of the <i>Tanichthys flavianalis</i> (Cypriniformes: Tanichthyidae) and its phylogeny

description: In the present study, we have sequenced, annotated and characterized the complete mitogenome of <i>Tanichthys flavianalis</i> Li, Liao & Shen, 2022, which is an endemic minnow to Hainan Province, China. The entire mitogenome size is 16,545 bp, containing 37 genes coding for 13 mitochondrial proteins, 22 tRNAs, 2 rRNAs, and one putative control region. It has the typical fish mitochondrial gene arrangement, though with 9 gene overlaps and 17 intergenic spacers scattering throughout the mitogenome, and a high A + T bias (60.8%) comparing to other Cyprinids. ATG is used as the start codon in most mitochondrial protein coding genes (PCGs) except for <i>cox1</i> which uses GTG, whereas the canonical TAA/TAG are prevailing stop codons except for <i>cox2</i>, <i>cox3</i>, <i>nad4</i> and <i>cytb</i>. Phylogenetic analyses with other reported species from Tanichyidae were conducted using IQ-TREE and MrBayes, based on the concatenated 13 PCGs. The results clustered <i>T. flavinalis</i> with the newly described <i>T. albiventris</i> Li Bohlen & Liao, 2022, and proved the reciprocally monophyletic relationship between Chinese and Vietnamese <i>Tanichthys</i>.
DOI: 10.6084/m9.figshare.24962342
title: The complete mitochondrial genome of Slaty-backed Forktail, <i>Enicurus schistaceus</i> (Passeriformes: Muscicapidae) and phylogenetic analysis

description: The complete mitogenome of the Slaty-backed Forktail (<i>Enicurus schistaceus</i>) was first sequenced using next-generation sequencing. It was 17,112 bp long, with a base composition of 14.17% G, 31.77% C, 30.73% A, and 23.33% T and an AT content of 54.06%. Similar to other mitochondrial genomes within the Muscicapidae family, <i>E. schistaceus</i> exhibited a relatively consistent mitogenome arrangement; it consisted of 22 tRNA genes, two rRNA genes, 13 protein-coding genes, and one control region. Notably, <i>ND6</i> and eight tRNA genes were encoded on the light strand. Phylogenetic analysis of the 12 Muscicapidae mitogenomes substantiated the monophyly of all genera, including <i>E. schistaceus</i>. Furthermore, the analysis demonstrated a close relationship between <i>Enicurus</i> and <i>Myophonus</i>.
DOI: 10.6084/m9.figshare.24779945
title: The complete mitochondrial genome of a new species of the genus <i>Schizothorax</i> from Sichuan, China (Cypriniformes: Cyprinidae)

description: <i>Schizothorax gulinensis</i> sp. nov. is a new species of the genus <i>Schizothorax</i> from Sichuan, China (Cypriniformes: Cyprinidae). In this study, we have first reported the complete mitochondrial genome of <i>S. gulinensis</i> with Illumina sequencing. There were 16,587 nucleotide pairs in the mitochondrial genome (mitogenome) of <i>S. gulinensis</i>, including 13 protein-coding genes (PCGs), two ribosomal RNAs (rRNAs), and 22 transfer RNAs (tRNAs), as well as one non-coding control region (CR). The proportion of nucleotides in mitochondrial genome was 29.67% (A), 25.45% (T), 17.84% (G), 27.05% (C), and A + T content was 55.12%. All PCGs have the same start codon of the standard ATG, excepting for that of NADH dehydrogenase subunit 1 (<i>nad1</i>) which was the ATC, NADH dehydrogenase subunit 5 (<i>nad5</i>) which was the ATT and cytochrome c oxidase 1 (<i>cox1</i>) which was the ATC. Phylogenetic analysis results supported that <i>S. gulinensis</i> was closely related to <i>Schizothorax grahami</i>. The complete mitochondrial sequence of <i>S. gulinensis</i> will contribute to mitochondrial genome database and provide useful resources for population genetics and evolution analyses.
DOI: 10.6084/m9.figshare.24779945.v1
title: The complete mitochondrial genome of a new species of the genus <i>Schizothorax</i> from Sichuan, China (Cypriniformes: Cyprinidae)

description: <i>Schizothorax gulinensis</i> sp. nov. is a new species of the genus <i>Schizothorax</i> from Sichuan, China (Cypriniformes: Cyprinidae). In this study, we have first reported the complete mitochondrial genome of <i>S. gulinensis</i> with Illumina sequencing. There were 16,587 nucleotide pairs in the mitochondrial genome (mitogenome) of <i>S. gulinensis</i>, including 13 protein-coding genes (PCGs), two ribosomal RNAs (rRNAs), and 22 transfer RNAs (tRNAs), as well as one non-coding control region (CR). The proportion of nucleotides in mitochondrial genome was 29.67% (A), 25.45% (T), 17.84% (G), 27.05% (C), and A + T content was 55.12%. All PCGs have the same start codon of the standard ATG, excepting for that of NADH dehydrogenase subunit 1 (<i>nad1</i>) which was the ATC, NADH dehydrogenase subunit 5 (<i>nad5</i>) which was the ATT and cytochrome c oxidase 1 (<i>cox1</i>) which was the ATC. Phylogenetic analysis results supported that <i>S. gulinensis</i> was closely related to <i>Schizothorax grahami</i>. The complete mitochondrial sequence of <i>S. gulinensis</i> will contribute to mitochondrial genome database and provide useful resources for population genetics and evolution analyses.
DOI: 10.6084/m9.figshare.24793713
title: Complete mitochondrial genome of golden variant of freshwater fish <i>Labeo rajasthanicus</i> (Cypriniformes: Cyprinidae): endemic to India

description: The complete mitochondrial genome of the freshwater fish species <i>Labeo rajasthanicus</i> was obtained, using Illumina NovaSeq 6000 with 2 × 150 bp paired-end sequencing. The mitogenome of <i>L. rajasthanicus</i> is 16,738 bp in length (GenBank accession no.: OQ834146), comprised of 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a control region, i.e. D-loop. The arrangement of genes was found to be identical to other Cypriniformes fish mitogenome, available in the NCBI database. The taxonomic status of <i>L. rajasthanicus</i> as a valid species was debated by some researchers and it was considered a synonym of <i>L. boggut.</i> However, phylogenetic analysis in the present study supports the species validity of <i>L. rajasthanicus</i>, as it showed a distinct node well separated from <i>L. boggut</i> and supported by a high bootstrap value. Furtherly, the pairwise genetic divergence among studied species showed the divergence between <i>L. rajasthanicus</i> and <i>L. boggut</i> as 1.6% whereas the minimum divergence was found to be 0.13% with <i>L. dussumieri</i> followed by <i>L. fimbriatus</i> (0.58%) and <i>L. gonius</i> (0.63%). The complete mitogenome of <i>L. rajasthanicus</i> will also be useful as a baseline reference genome for the reconstruction and annotation of the mitogenome of other <i>Labeo</i> species.
DOI: 10.6084/m9.figshare.24793713.v1
title: Complete mitochondrial genome of golden variant of freshwater fish <i>Labeo rajasthanicus</i> (Cypriniformes: Cyprinidae): endemic to India

description: The complete mitochondrial genome of the freshwater fish species <i>Labeo rajasthanicus</i> was obtained, using Illumina NovaSeq 6000 with 2 × 150 bp paired-end sequencing. The mitogenome of <i>L. rajasthanicus</i> is 16,738 bp in length (GenBank accession no.: OQ834146), comprised of 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a control region, i.e. D-loop. The arrangement of genes was found to be identical to other Cypriniformes fish mitogenome, available in the NCBI database. The taxonomic status of <i>L. rajasthanicus</i> as a valid species was debated by some researchers and it was considered a synonym of <i>L. boggut.</i> However, phylogenetic analysis in the present study supports the species validity of <i>L. rajasthanicus</i>, as it showed a distinct node well separated from <i>L. boggut</i> and supported by a high bootstrap value. Furtherly, the pairwise genetic divergence among studied species showed the divergence between <i>L. rajasthanicus</i> and <i>L. boggut</i> as 1.6% whereas the minimum divergence was found to be 0.13% with <i>L. dussumieri</i> followed by <i>L. fimbriatus</i> (0.58%) and <i>L. gonius</i> (0.63%). The complete mitogenome of <i>L. rajasthanicus</i> will also be useful as a baseline reference genome for the reconstruction and annotation of the mitogenome of other <i>Labeo</i> species.
DOI: 10.17632/b6cj8k8x3g.1
title: plants disease dataset

description: multiple plant consist : tomato, tea, potato, chili, corn, bean
DOI: 10.17632/b6cj8k8x3g.2
title: plants disease dataset

description: multiple plant consist : tomato, tea, potato, chili, corn, bean
DOI: 10.48420/25460800
title: British Election Study Internet Panel: Devolved Politics and COVID-19 Supplement (Wave 22) – Linkable to Scottish/Welsh Election Studies

description: A supplementary dataset for the British Election Study Internet Panel (BESIP), which includes unreleased items that were collected in wave 22 of the panel (December 2021). The items within this dataset capture responses to survey questions about how the UK, Scottish, and Welsh governments were handling the COVID-19 pandemic and Scottish constitutional questions. The dataset also includes ID variables that can be used to link respondents that took part in each of the British, Scottish, and Welsh Election Studies.
DOI: 10.48420/25460800.v1
title: British Election Study Internet Panel: Devolved Politics and COVID-19 Supplement (Wave 22) – Linkable to Scottish/Welsh Election Studies

description: A supplementary dataset for the British Election Study Internet Panel (BESIP), which includes unreleased items that were collected in wave 22 of the panel (December 2021). The items within this dataset capture responses to survey questions about how the UK, Scottish, and Welsh governments were handling the COVID-19 pandemic and Scottish constitutional questions. The dataset also includes ID variables that can be used to link respondents that took part in each of the British, Scottish, and Welsh Election Studies.
DOI: 10.5281/zenodo.10876708
title: Dataset for "All field emission experiments are noisy, ... are any meaningful ?"

description: The dataset are in text format, the files to analyze and generate the figures are in jupyter format for python with a copy in pdf format.

Description of files and folders :

I) Data

This folder contains the different experimental I-V data

II) Data analysis for a work function of 4.5eV

This file analyse the data in the "Data" folder and generates the files in the "Analyzed" folder.

It includes also the data to plot Figure 2, 3, 5, 9 and 10.

III) Data analysis for a work function of 5eV

This file analyse the data in the "Data" folder and generates the files in the "Analyzed5eV" folder.

IV) Data analysis of the drift

This file analyse the data in the "Analyzed" and "Analyzed5eV" folders.

It includes also the data to plot Figure 4 and 8.V) Figure 6

This file analyse the data in ".\Analyzed\paramIV4d.txt".

It plots Figure 6.

VI) Figure 7

This file analyse the data in ".\Data\IV4d.txt".

It plots Figure 7.

VII) Generating noisy data

This file contains numerical simulations of I-V data with noise and generates the files in the "Generated_nosiy_data" folder.

VIII) Plotting noisy data

This file plots Figure 11 and 12 from the data in the "Generated_nosiy_data" folder.
DOI: 10.5281/zenodo.7215660
title: Dataset for "All field emission experiments are noisy, ... are any meaningful ?"

description: The dataset are in text format, the files to analyze and generate the figures are in jupyter format for python with a copy in pdf format.

Description of files and folders :

I) Data

This folder contains the different experimental I-V data

II) Data analysis for a work function of 4.5eV

This file analyse the data in the "Data" folder and generates the files in the "Analyzed" folder.

It includes also the data to plot Figure 2, 3, 5, 9 and 10.

III) Data analysis for a work function of 5eV

This file analyse the data in the "Data" folder and generates the files in the "Analyzed5eV" folder.

IV) Data analysis of the drift

This file analyse the data in the "Analyzed" and "Analyzed5eV" folders.

It includes also the data to plot Figure 4 and 8.V) Figure 6

This file analyse the data in ".\Analyzed\paramIV4d.txt".

It plots Figure 6.

VI) Figure 7

This file analyse the data in ".\Data\IV4d.txt".

It plots Figure 7.

VII) Generating noisy data

This file contains numerical simulations of I-V data with noise and generates the files in the "Generated_nosiy_data" folder.

VIII) Plotting noisy data

This file plots Figure 11 and 12 from the data in the "Generated_nosiy_data" folder.
DOI: 10.5281/zenodo.7215661
title: Dataset for "All field emission experiments are noisy, ... are any meaningful ?"

description: The dataset are in text format, the files to analyze and generate the figures are in jupyter format for python with a copy in pdf format. Description of files and folders : I) <strong>Data</strong> This folder contains the different experimental I-V data II) <strong>Data analysis for a work function of 4.5eV</strong> This file analyse the data in the "Data" folder and generates the files in the "<strong>Analyzed</strong>" folder. It includes also the data to plot Figure 1, 2, 4, 8 and 9. III) <strong>Data analysis for a work function of 5eV</strong> This file analyse the data in the "Data" folder and generates the files in the "<strong>Analyzed5eV</strong>" folder. IV) <strong>Data analysis of the drift</strong> This file analyse the data in the "Analyzed" and "Analyzed5eV" folders. It includes also the data to plot Figure 3 and 7.<br> V) <strong>Figure 5</strong> This file analyse the data in ".\Analyzed\paramIV4d.txt". It plots Figure 5. VI) <strong>Figure 6</strong> This file analyse the data in ".\Data\IV4d.txt". It plots Figure 6. VII) <strong>Generating noisy data</strong> This file contains numerical simulations of I-V data with noise and generates the files in the "Generated_nosiy_data" folder. VIII) <strong>Plotting noisy data</strong> This file plots Figure 10 and 11 from the data in the "Generated_nosiy_data" folder.