cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/mer-l5g-z9b
title: Melanohalea elegantula (Zahlbr.) O. Blanco, A. Crespo, Divakar, Essl., D. Hawksw. & Lumbsch

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w1t-y43-6zm
title: Nitella C.Agardh, 1824

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ps4-g02-hkj
title: Frullania intumescens (Lehm. & Lindenb.) Lehm. & Lindenb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/q5a-jz7-jnd
title: Linaria verticillata subsp. cuartanensis (Degen & Hervier) L. Sáez & M. B. Crespo

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/26y-4dv-qe6
title: Tournefortiopsis hirsuta (Ruiz & Pav.) Borhidi

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/r93-e0c-lyw
title: Scrophulariaceae Juss.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.5281/zenodo.16575008
title: lemur-tool-wrapper-test-data

description: Test data for tools-iuc repository lemur tool in galaxy. This data was generated using an adjusted version of the R script from: https://github.com/const-ae/lemur that has been adapted for the tool wrapper. The publication associated to this tool is: Ahlmann-Eltze, C., Huber, W. Analysis of multi-condition single-cell data with latent embedding multivariate regression. Nat Genet 57, 659–667 (2025). https://doi.org/10.1038/s41588-024-01996-0
DOI: 10.5281/zenodo.16575009
title: lemur-tool-wrapper-test-data

description: Test data for tools-iuc repository lemur tool in galaxy. This data was generated using an adjusted version of the R script from: https://github.com/const-ae/lemur that has been adapted for the tool wrapper. The publication associated to this tool is: Ahlmann-Eltze, C., Huber, W. Analysis of multi-condition single-cell data with latent embedding multivariate regression. Nat Genet 57, 659–667 (2025). https://doi.org/10.1038/s41588-024-01996-0
DOI: 10.3535/74x-5zh-nvk
title: Linaria dalmatica (L.) Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rym-m7g-nmw
title: Radula javanica Gottsche

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hh0-mg2-zex
title: Lepra albescens (Huds.) Hafellner

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/qgs-zcd-k8s
title: Cucurbitaria steineri Petr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7ls-3ad-c7h
title: Linaria elegans Cav.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/en3-1y2-q1x
title: Linaria supina (L.) Chaz.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/265-6yq-whk
title: Ceratolejeunea rubiginosa Steph.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/8e4-l2l-wq1
title: Linaria tenuis (Viv.) Spreng.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7ln-gga-w2t
title: Linaria oblongifolia subsp. aragonensis (Lange) D. A. Sutton

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vc2-j4g-5y8
title: Rumex frutescens Thouars

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wc2-k51-wam
title: Linaria tursica Valdés & Cabezudo

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6c7-8jb-lsv
title: Cormus domestica (L.) Spach

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/74r-9ge-lat
title: Odontites longiflorus (Vahl) Webb

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w1f-az0-3mz
title: Paulia myriocarpa (Zahlbr.) Henssen

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ydm-kha-4g9
title: Digitalis parviflora Jacq.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rfk-la7-pev
title: Pseudoheppia schuleri Zahlbr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wg7-4jb-q25
title: Sclerochloa dura (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/48g-ykw-j66
title: Verbascum phoeniceum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7t8-8ld-4p7
title: Aspicilia

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rrn-9m7-c1p
title: Acarospora

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/l01-ea5-wgx
title: Cladophora Kützing, 1843

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zt2-5rs-bv2
title: Lopadium

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1w6-p0q-w09
title: Gentianella rhaetica (A. Kern. & Jos. Kern.) Á. Löve & D. Löve

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jdg-d2m-9r8
title: Ephebe

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hwq-8cs-xt6
title: Caloplaca

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0hh-n44-cjx
title: Riccia bifurca Hoffm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1qw-3b0-d1f
title: Valerianella locusta (L.) Laterr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5hj-skt-m64
title: Calogaya biatorina (A. Massal.) Arup, Frödén & Søchting

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/64j-sb8-f0v
title: Aspicilia

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mj6-ghl-ch5
title: Aspicilia

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/4zq-04c-2wr
title: Ficaria calthifolia Rchb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/fnf-m5s-rtz
title: Vicia lathyroides L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6th-32m-56l
title: Catillaria nigroclavata (Nyl.) J. Steiner

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/j3g-syk-00d
title: Vicia tenuifolia Roth

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/cx6-94r-zsz
title: Physcia stellaris (L.) Nyl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0ty-33d-ey8
title: Linaria alpina subsp. alpina

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zn2-aa4-b9m
title: Lejeunea laeta (Lehm. & Lindenb.) Lehm. & Lindenb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ajr-xyl-dyp
title: Bazzania falcata (Lindenb.) Trevis.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/cs5-nyj-1pn
title: Ceratolejeunea laetefusca (Austin) R.M. Schust.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/09m-a6s-qdr
title: Orobanche pancicii Beck

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/egq-3cw-hvc
title: Linaria nivea Boiss. & Reut.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0tr-6hp-dl9
title: Linaria chalepensis (L.) Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.17632/ptf452p298
title: High glucose induces hippocampal neuron impairment through the SKP1/COX7C pathway: a potential mechanism for perimenopausal depression

description: Perimenopause raises the risk and incidence of depression, whereas the underlying molecular mechanism remains unclear. Disturbed glucose regulation has been widely documented in depressive disorders, which renders the brain susceptible to various stresses such as estrogen depletion. However, whether and how glucose dysfunction regulates depression-like behaviors and neuronal damage in perimenopausal transition remains unexplored. Here, a prominent depressive phenotype was found in perimenopausal mice induced by the ovarian toxin 4‐vinylcyclohexene diepoxide (VCD). The VCD depression susceptible group (VCDSS) and the VCD depression resilient group (VCDRES) were determined using a ROC-based behavioral screening approach. We found that the hippocampus, a crucial region linked to depression, had hyperglycemia and mitochondrial abnormalities. Interestingly, oral administration of the SGLT2 inhibitor empagliflozin (EMPA) and intrahippocampal glucose infusion suggest a close relationship between hyperglycemia in the hippocampus and the susceptibility to depression. We verified that cytochrome c oxidase 7c (COX7C) downregulation is a potential cause of the high glucose-induced neuronal injury using proteomic screening and biochemical validations. High glucose causes COX7C to be ubiquitinated in a S-phase kinase associated protein 1 (SKP1)-dependent manner. According to these results, SKP1/COX7C represents a unique therapeutic target and a novel molecular route for treating perimenopausal depression. This data is the original data related to the study, including western blot, historical and fluorescence staining results.
DOI: 10.3535/mwl-709-j0g
title: Lopholejeunea eulopha (Taylor) Schiffn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pd7-hcr-zx2
title: Candelariella reflexa (Nyl.) Lettau

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6bg-46h-0w3
title: Phlyctis argena (Ach.) Flot.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/cl4-6cb-r3m
title: Plagiochila subplana Lindenb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.17632/ptf452p298.1
title: High glucose induces hippocampal neuron impairment through the SKP1/COX7C pathway: a potential mechanism for perimenopausal depression

description: Perimenopause raises the risk and incidence of depression, whereas the underlying molecular mechanism remains unclear. Disturbed glucose regulation has been widely documented in depressive disorders, which renders the brain susceptible to various stresses such as estrogen depletion. However, whether and how glucose dysfunction regulates depression-like behaviors and neuronal damage in perimenopausal transition remains unexplored. Here, a prominent depressive phenotype was found in perimenopausal mice induced by the ovarian toxin 4‐vinylcyclohexene diepoxide (VCD). The VCD depression susceptible group (VCDSS) and the VCD depression resilient group (VCDRES) were determined using a ROC-based behavioral screening approach. We found that the hippocampus, a crucial region linked to depression, had hyperglycemia and mitochondrial abnormalities. Interestingly, oral administration of the SGLT2 inhibitor empagliflozin (EMPA) and intrahippocampal glucose infusion suggest a close relationship between hyperglycemia in the hippocampus and the susceptibility to depression. We verified that cytochrome c oxidase 7c (COX7C) downregulation is a potential cause of the high glucose-induced neuronal injury using proteomic screening and biochemical validations. High glucose causes COX7C to be ubiquitinated in a S-phase kinase associated protein 1 (SKP1)-dependent manner. According to these results, SKP1/COX7C represents a unique therapeutic target and a novel molecular route for treating perimenopausal depression. This data is the original data related to the study, including western blot, historical and fluorescence staining results.
DOI: 10.3535/68l-wgv-20e
title: Digitalis mariana subsp. mariana

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/a81-bjv-00g
title: Calogaya decipiens (Arnold) Arup, Frödén & Søchting

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/c2s-e0k-jmp
title: Riccardia regnellii (Ångstr.) K.G. Hell

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/e6m-k0y-ve0
title: Plagiochila aerea Taylor

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1vs-yfb-9qk
title: Tournefortiopsis dependens (Ruiz & Pav.) Borhidi

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wwh-rx6-rr6
title: Dermatocarpon

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/p4v-zh3-323
title: Rumex obtusifolius L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/548-el7-lf5
title: Otigoniolejeunea huctumalcensis (Lindenb. & Gottsche) Y.M. Wei, R.L. Zhu & Gradst.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/a19-y08-bph
title: Fuscocephaloziopsis crassifolia (Lindenb. & Gottsche) Váňa & L. Söderstr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/327-3b5-2g8
title: Radula pusilla Spruce

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/l95-x0d-lyv
title: Oenanthe conioides Nolte ex Lange

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.6084/m9.figshare.29666462
title: tNGS

description: <b>Targeted Next-generation Sequencing technology in the diagnosis of primary bone and joint infections</b>
DOI: 10.6084/m9.figshare.29666462.v1
title: tNGS

description: <b>Targeted Next-generation Sequencing technology in the diagnosis of primary bone and joint infections</b>
DOI: 10.3535/yfv-8f2-1d2
title: Lepidium afghanicum (Rech. fil. & Köie) Al-Shehbaz & Mumm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/389-1d2-cgt
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/c5l-1b7-f83
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/qxe-xl7-zwc
title: Lepidium reverchonii Debeaux ex Willk.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/z7t-ary-6yk
title: Lepidium africanum (Burm. fil.) DC.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7sw-8sb-hvq
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.anymp4
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tithonia rotundifolia",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 355 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068401-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ddh-avd-w82
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ey1-5x4-zfz
title: Lepidium afghanicum (Rech. fil. & Köie) Al-Shehbaz & Mumm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/989-x9j-wax
title: Lepidium aretioides (Hedge) Al-Shehbaz

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/s2d-lvk-rmt
title: Lepidium afghanicum (Rech. fil. & Köie) Al-Shehbaz & Mumm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bb3-7z3-b99
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rt4-bp3-zej
title: Achillea setacea Waldst. & Kit.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/tx7-xcc-qr4
title: Achillea tomentosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/tkd-3q2-3z8
title: Achillea setacea Waldst. & Kit.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/z13-gc1-yvm
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9k9-6fg-fd9
title: Artemisia L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lrq-7m7-wtg
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/2sg-2vm-3p4
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/anw-hdd-tte
title: Achillea umbellata Sm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.34740/kaggle/dsv/12612225
title: Mahanagar Yatayat Transport Dataset
DOI: 10.3535/te9-m1m-3gf
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7pw-3ec-el2
title: Achillea tomentosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wmt-1wc-91n
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/4a4-j78-8hp
title: Centaurea × preissmannii Hayek

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/fsh-wb2-zax
title: Achillea umbellata Sm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/kmr-b81-j5g
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/019-4wg-4lk
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/qax-dgs-5nj
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/cmv-0f4-7eq
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/n9d-d8n-z6a
title: Isoetes lacustris L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.17632/n4jn62rh2m
title: Supplementary Materials for Optimizing Real-Time Phenotyping in Critical Care Using Machine Learning on Electronic Health Records

description: This dataset accompanies the study "Optimizing Real-Time Phenotyping in Critical Care Using Machine Learning on Electronic Health Records," which hypothesizes that a patient's latent disease state can be continuously and accurately estimated from real-time biomedical signals without requiring full ICU trajectories. It supports replication and evaluation of our predictive framework, which dynamically models phenotype probabilities as data accumulates. All elements are reported in line with the TRIPOD statement to ensure transparency and reproducibility.

The training and test data are derived from the MIMIC-IV database and consist of vectorized representations of multivariate, irregularly sampled biomedical time series and associated phenotype labels. These were generated through a structured pipeline that includes cohort selection, event aggregation using fixed-length time bins, and feature engineering to represent both value trends and missingness. Supplementary Tables S.1 to S.6 describe the variables used in this transformation, their sources within the EHR, aggregation methods, and descriptive statistics for both static (e.g., demographics, admission data) and dynamic (e.g., vital signs, lab results, ventilator settings) features across the train and test sets.

Table S.7 summarizes the model’s real-time phenotyping performance using multiple evaluation perspectives. The results reveal strong generalization and early predictive value: in the (ls) setting, the model achieved good diagnostic performance (AUROC ≥ 0.8) for 69% of phenotypes and excellent performance (AUROC ≥ 0.9) for 30%. In the real-time (fs) setting—using only the earliest recorded physiological data—the model still achieved good performance for 40% of phenotypes and excellent performance for 5%, demonstrating the feasibility of early, actionable phenotyping. The intermediate (td) evaluation shows that predictive quality improves consistently as more data becomes available, supporting the framework’s ability to track dynamic disease progression in real time.

To interpret and use the data:
- Each patient stay is represented as a multivariate time series with associated phenotype labels.
- Time series are aligned in fixed time intervals (e.g., 2 hours), where each variable is aggregated using statistical functions (e.g., mean, last, sum).
- The phenotype labels correspond to ICD-9-CM diagnostic categories assigned at discharge but are used here as latent variables to be estimated continuously.

This dataset enables reproducibility of the results and further research in developing machine learning models for early, interpretable, and actionable phenotyping in critical care.
DOI: 10.3535/2pk-6ag-qmy
title: Sporobolus R.Br.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xb3-6tn-ths
title: Halopyrum mucronatum (L.) Stapf

description: Digital Specimen for the physical specimen hosted at University of Graz.