cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4254455
title: Patients’ perception of Parkinson’s disease-associated pain following initiation of rotigotine: a multicenter non-interventional study

description: <b>Objectives</b>: To evaluate Parkinson’s disease (PD)-associated pain as perceived by the patients (subjective characterization), and how this may change following initiation of rotigotine transdermal patch. <b>Methods</b>: SP1058 was a non-interventional study conducted in routine clinical practice in Germany and Austria in patients experiencing PD-associated pain (per the physician’s assessment). Data were collected at baseline (ie, before rotigotine initiation) and at a routine visit after ≥25 days (–3 days allowed) of treatment on a maintenance dose of rotigotine (end of study [EoS]). Pain perception was assessed using the 12-item Pain Description List of the validated German Pain Questionnaire (each item ranked 0 = ‘not true’ to 3 = ‘very true’). Primary effectiveness variable: change from baseline to EoS in the sum score of the 4 ‘affective dimension’ items of the Pain Description List. Secondary effectiveness variables: change from baseline to EoS in Unified Parkinson’s Disease Rating Scale (UPDRS) II, III, and II+III scores, and Parkinson’s Disease Questionnaire (PDQ-8) total score (PD-related quality-of-life). Other variables included scores of the eight ‘sensory dimension’ items of the Pain Description List. <b>Results</b>: Of 93 enrolled patients (mean [SD] age: 71.1 [9.0] years; male: 48 [52%]), 77 (83%) completed the study, and 70 comprised the full analysis set. The mean (SD) change from baseline in the sum score of the four ‘affective dimension’ items was –1.3 (2.8) indicating a numerical improvement (baseline: 3.9 [3.4]). In the ‘sensory dimension’, pain was mostly perceived as ‘pulling’ at baseline (49/70 [70%]); ‘largely true’/‘very true’). Numerical improvements were observed in all UPDRS scores (mean [SD] change in UPDRS II+III: −5.3 [10.5]; baseline: 36.0 [15.9]), and in PDQ-8 total score (−2.0 [4.8]; baseline: 10.7 [5.9]). Adverse drug reactions were consistent with dopaminergic stimulation and transdermal administration. <b>Conclusion</b>: The perception of the ‘affective dimension’ of PD-associated pain numerically improved in patients treated with rotigotine. ClinicalTrials.gov identifier: NCT01606670; https://clinicaltrials.gov/ct2/show/NCT01606670?term=NCT01606670&rank=1
DOI: 10.6084/m9.figshare.4254455.v1
title: Patients’ perception of Parkinson’s disease-associated pain following initiation of rotigotine: a multicenter non-interventional study

description: <b>Objectives</b>: To evaluate Parkinson’s disease (PD)-associated pain as perceived by the patients (subjective characterization), and how this may change following initiation of rotigotine transdermal patch. <b>Methods</b>: SP1058 was a non-interventional study conducted in routine clinical practice in Germany and Austria in patients experiencing PD-associated pain (per the physician’s assessment). Data were collected at baseline (ie, before rotigotine initiation) and at a routine visit after ≥25 days (–3 days allowed) of treatment on a maintenance dose of rotigotine (end of study [EoS]). Pain perception was assessed using the 12-item Pain Description List of the validated German Pain Questionnaire (each item ranked 0 = ‘not true’ to 3 = ‘very true’). Primary effectiveness variable: change from baseline to EoS in the sum score of the 4 ‘affective dimension’ items of the Pain Description List. Secondary effectiveness variables: change from baseline to EoS in Unified Parkinson’s Disease Rating Scale (UPDRS) II, III, and II+III scores, and Parkinson’s Disease Questionnaire (PDQ-8) total score (PD-related quality-of-life). Other variables included scores of the eight ‘sensory dimension’ items of the Pain Description List. <b>Results</b>: Of 93 enrolled patients (mean [SD] age: 71.1 [9.0] years; male: 48 [52%]), 77 (83%) completed the study, and 70 comprised the full analysis set. The mean (SD) change from baseline in the sum score of the four ‘affective dimension’ items was –1.3 (2.8) indicating a numerical improvement (baseline: 3.9 [3.4]). In the ‘sensory dimension’, pain was mostly perceived as ‘pulling’ at baseline (49/70 [70%]); ‘largely true’/‘very true’). Numerical improvements were observed in all UPDRS scores (mean [SD] change in UPDRS II+III: −5.3 [10.5]; baseline: 36.0 [15.9]), and in PDQ-8 total score (−2.0 [4.8]; baseline: 10.7 [5.9]). Adverse drug reactions were consistent with dopaminergic stimulation and transdermal administration. <b>Conclusion</b>: The perception of the ‘affective dimension’ of PD-associated pain numerically improved in patients treated with rotigotine. ClinicalTrials.gov identifier: NCT01606670; https://clinicaltrials.gov/ct2/show/NCT01606670?term=NCT01606670&rank=1
DOI: 10.6084/m9.figshare.4254404
title: How motor representation shapes action experience?

description: There is a great deal of studies showing that motor processes and representations are involved in sub-personal processing of observed actions. However, so far little research has directly explored whether our own motor system may affect the way we make experience of others’ actions. How and to what extent our motor processing of others’ actions may influence our perceptual experience of them?We designed and tested a behavioural model. The protocol consist in two phases: (i) assessing the power of the tool as a good measure for apparent movement judgments (ii) manipulating the observer’s motor system state.
DOI: 10.17045/sthlmuni.4254335
title: Scripts for logistic regression of ASE genomic determinants.

description: Script used in Steige et al. 2017 PNAS for estimating the impact of genomic features on allele specific expression in Capsella grandiflora using logistic regression.<br> * The folders contains an jupyter notebook (ypython) that runs the analysis by downloading the input from figshare * A html reports of the analysis performed in the paper * a r script from the jupyter notebook
DOI: 10.6084/m9.figshare.4254275
title: Kenna et al SI Tables.xlsx

description: Supplementary tables for the paper "Antagonistic effects of biological invasion and environmental warming on detritus processing in freshwater ecosystems" by Kenna et al. in Oecologia. <b>Table S1. </b>Temperature at nine points along the temperature gradient measured every 15 minutes over the 45 minute observation period (n=15 observations at each location). <b>Table S2. </b>Control experiments carried out with uniform temperature (20°C) throughout entire track. N=6 specimens of each species used <b>Table S3. </b>Final data for temperature preference experiment - showing all size and weights of individuals and median temperature preferences <b>Table S4. </b>All data from shredding experiments, including animals that were excluded from the analysis due to cannibalism or that moulting (see notes). Sample sizes are n=20 for each species at each temperature.
DOI: 10.6084/m9.figshare.4254041
title: MRSA Prevalence and Risk Factors among Health Personnel and Residents in Nursing Homes in Hamburg, Germany – A Cross-Sectional Study

description: Data used in the article ‘MRSA Prevalence and Risk Factors among Health Personnel and Residents in Nursing Homes in Hamburg, Germany – A Cross-Sectional Study' for publishing in Plos One
DOI: 10.6084/m9.figshare.4254041.v1
title: MRSA Prevalence and Risk Factors among Health Personnel and Residents in Nursing Homes in Hamburg, Germany – A Cross-Sectional Study

description: Data used in the article ‘MRSA Prevalence and Risk Factors among Health Personnel and Residents in Nursing Homes in Hamburg, Germany – A Cross-Sectional Study' for publishing in Plos One
DOI: 10.6084/m9.figshare.4254032
title: Supplementary Material for: Precuneal Thickness and Depression in Parkinson Disease

description: <b><i>Background:</i></b> Depression-related gray matter changes in Parkinson disease (PD) patients have been reported, although studies investigating cortical thickness in early-stage disease are lacking. <b><i>Objective:</i></b> We aimed to evaluate cortical changes related to depression in early-stage PD patients with an extensive neuropsychological evaluation. <b><i>Methods:</i></b> 17 PD patients and 22 healthy controls underwent a 1.5-T brain MR protocol, and voxel-wise differences in cortical thickness among patients with (<i>n</i> = 6) and without (<i>n</i> = 11) depression and controls were evaluated using FreeSurfer software. <b><i>Results:</i></b> Cortical thickness was increased in the precuneus bilaterally in PD patients with depression compared to the other groups (number of vertices &gt;100; <i>p</i> &lt; 0.001, uncorrected) with a direct correlation with the Beck Depression Inventory score (<i>p</i> &lt; 0.001, uncorrected). <b><i>Conclusion:</i></b> Precuneal cortical thickening is evident in PD patients with mild-moderate depression even in the early stages of the disease. This finding may reflect the early involvement of this region in the development of PD-related depression.
DOI: 10.6084/m9.figshare.4253795
title: Supplementary Material for: Gut Microbiota, Bacterial Translocation, and Interactions with Diet: Pathophysiological Links between Major Depressive Disorder and Non-Communicable Medical Comorbidities

description: <b><i>Background:</i></b> Persistent low-grade immune-inflammatory processes, oxidative and nitrosative stress (O&NS), and hypothalamic-pituitary-adrenal axis activation are integral to the pathophysiology of major depressive disorder (MDD). The microbiome, intestinal compositional changes, and resultant bacterial translocation add a new element to the bidirectional interactions of the gut-brain axis; new evidence implicates these pathways in the patho-aetiology of MDD. In addition, abnormalities in the gut-brain axis are associated with several chronic non-communicable disorders, which frequently co-occur in individuals with MDD, including but not limited to irritable bowel syndrome (IBS), chronic fatigue syndrome (CFS), obesity, and type 2 diabetes mellitus (T2DM). <b><i>Methods:</i></b> We searched the PubMed/MEDLINE database up until May 1, 2016 for studies which investigated intestinal dysbiosis and bacterial translocation (the ‘leaky gut') in the pathophysiology of MDD and co-occurring somatic comorbidities with an emphasis on IBS, CFS, obesity, and T2DM. <b><i>Results:</i></b> The composition of the gut microbiota is influenced by several genetic and environmental factors (e.g. diet). Several lines of evidence indicate that gut-microbiota-diet interactions play a significant pathophysiological role in MDD and related medical comorbidities. Gut dysbiosis and the leaky gut may influence several pathways implicated in the biology of MDD, including but not limited to immune activation, O&NS, and neuroplasticity cascades. However, methodological inconsistencies and limitations limit comparisons across studies. <b><i>Conclusions:</i></b> Intestinal dysbiosis and the leaky gut may constitute a key pathophysiological link between MDD and its medical comorbidities. This emerging literature opens relevant preventative and therapeutic perspectives.
DOI: 10.6084/m9.figshare.4253795.v1
title: Supplementary Material for: Gut Microbiota, Bacterial Translocation, and Interactions with Diet: Pathophysiological Links between Major Depressive Disorder and Non-Communicable Medical Comorbidities

description: <b><i>Background:</i></b> Persistent low-grade immune-inflammatory processes, oxidative and nitrosative stress (O&NS), and hypothalamic-pituitary-adrenal axis activation are integral to the pathophysiology of major depressive disorder (MDD). The microbiome, intestinal compositional changes, and resultant bacterial translocation add a new element to the bidirectional interactions of the gut-brain axis; new evidence implicates these pathways in the patho-aetiology of MDD. In addition, abnormalities in the gut-brain axis are associated with several chronic non-communicable disorders, which frequently co-occur in individuals with MDD, including but not limited to irritable bowel syndrome (IBS), chronic fatigue syndrome (CFS), obesity, and type 2 diabetes mellitus (T2DM). <b><i>Methods:</i></b> We searched the PubMed/MEDLINE database up until May 1, 2016 for studies which investigated intestinal dysbiosis and bacterial translocation (the ‘leaky gut') in the pathophysiology of MDD and co-occurring somatic comorbidities with an emphasis on IBS, CFS, obesity, and T2DM. <b><i>Results:</i></b> The composition of the gut microbiota is influenced by several genetic and environmental factors (e.g. diet). Several lines of evidence indicate that gut-microbiota-diet interactions play a significant pathophysiological role in MDD and related medical comorbidities. Gut dysbiosis and the leaky gut may influence several pathways implicated in the biology of MDD, including but not limited to immune activation, O&NS, and neuroplasticity cascades. However, methodological inconsistencies and limitations limit comparisons across studies. <b><i>Conclusions:</i></b> Intestinal dysbiosis and the leaky gut may constitute a key pathophysiological link between MDD and its medical comorbidities. This emerging literature opens relevant preventative and therapeutic perspectives.
DOI: 10.6084/m9.figshare.4253426
title: Companion of the article on Modeling Distributed Platforms from Application Traces for Realistic File Transfer Simulation

description: Sources and supplementary data associated to the paper entitled "Modeling Distributed Platforms from Application Traces for Realistic File Transfer Simulation"
DOI: 10.6084/m9.figshare.4253423
title: Radon-222 and radium-226 occurrence in water: a review

description: The database is available as a table.
DOI: 10.6084/m9.figshare.4253423.v1
title: Radon-222 and radium-226 occurrence in water: a review

description: The database is available as a table.
DOI: 10.6084/m9.figshare.4253426.v2
title: Companion of the article on Modeling Distributed Platforms from Application Traces for Realistic File Transfer Simulation}

description: Sources and supplementary data associated to the paper entitled "Modeling Distributed Platforms from Application Traces for Realistic File Transfer Simulation"
DOI: 10.17045/sthlmuni.4253402
title: Scripts for analysing genomic data and ASE in Capsellla grandiflora

description: An example script with all program versions and flags used for bioinformatic analyses in Steige et al. 2017 PNAS.
DOI: 10.6084/m9.figshare.4253156
title: Charity Open Access Fund (COAF) expenditure report 2015-16

description: Charity Open Access Fund (COAF) expenditure report 2015-16 for the London School of Hygiene & Tropical Medicine
DOI: 10.6084/m9.figshare.4253156.v1
title: Charity Open Access Fund (COAF) expenditure report 2015/16

description: Charity Open Access Fund (COAF) expenditure report 2015/16 for London School of Hygiene & Tropical Medicine
DOI: 10.6084/m9.figshare.4253156.v4
title: Charity Open Access Fund (COAF) expenditure report 2015-16

description: Charity Open Access Fund (COAF) expenditure report 2015-16 for the London School of Hygiene & Tropical Medicine
DOI: 10.6084/m9.figshare.4253156.v3
title: Charity Open Access Fund (COAF) expenditure report 2015/16

description: Charity Open Access Fund (COAF) expenditure report 2015/16 for London School of Hygiene & Tropical Medicine
DOI: 10.6084/m9.figshare.4252646
title: Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of 18S rRNA gene with a focus on Chlorophyta

description: <b>Supplementary data 1</b>. Mothur script for sequence analysis<br><b>Supp. data 2</b>. Fasta file of Chlorophyta OTUs for V4<br><b>Supp. data 3</b>. Fasta file of Chlorophyta OTUs for V9<br><b>Supp. data 4</b>. Chlorophyta OTUs for V4 with assignation and read abundance at the different stations (Excel file).<br><b>Supp. data 5</b>. Chlorophyta OTUs for V9 with assignation and read abundance at the different stations (Excel file).<br><b>Supp. data 6</b>. Top 10 BLAST hits against Genbank nr database for Chlorophyta V4 OTUs. Red lines correspond to OTUs badly assigned to non Chlorophyta and green corresponds to OTUs badly assigned to another Chlorophyta representative.<br><b>Supp. data 7</b>. Top 10 BLAST hits against Genbank nr database for Chlorophyta V9 OTUs. Red lines correspond to OTUs badly assigned to non Chlorophyta and green lines corresponds to OTUs badly assigned to another Chlorophyta representative.<br>
DOI: 10.21227/45kk-sz46
title: Dataset with cyber attacks in HoneySELK

description: Due to the large number of vulnerabilities in information systems and the continuous activity of attackers, techniques for malicious traffic detection are required to identify and protect against cyber-attacks. Therefore, it is important to intentionally operate a cyber environment to be invaded and compromised in order to allow security professionals to analyze the evolution of the various attacks and exploited vulnerabilities.This dataset includes 2016, 2017 and 2018 cyber attacks in the HoneySELK environment.HoneySELK was developed to control, capture, analyze and visualize new and unknown attacks in real time within the research laboratory of the Electrical Engineering Department of the University of Brasília. - Rodrigues, G.A.P.; Albuquerque, R.d.O.; de Deus, F.E.G.; de Sousa, R.T., Jr.; de Oliveira Júnior, G.A. Cybersecurity and Network Forensics: Analysis of Malicious Traffic towards a Honeynet with Deep Packet Inspection. Appl. Sci. 2017, 7, 1082 (https://www.mdpi.com/2076-3417/7/10/1082).- Oliveira Júnior, G.A.; de Sousa, R.T., Jr.; de Albuquerque, R.O.; Canedo, E.D.; Grégio, A. HoneySELK: Um Ambiente para Pesquisa e Visualização de Ataques Cibernéticos em Tempo Real. In Proceedings of the XVI Simpósio Brasileiro em Segurança da Informação e de Sistemas Computacionais, Niteroi, Rio de Janeiro, Brazil, 7–10 November 2016; pp. 697–706 (http://sbseg2016.ic.uff.br/pt/anais.php and https://repositorio.unb.br/handle/10482/22886).- Oliveira Jr, G. A., Sousa Jr, R. T. de, Tenório, D. F. (2015). Desenvolvimento de um Ambiente Honeynet Virtual para Aplicação Governamental. In: The Ninth International Conference on Forensic Computer Science. v. 1. p. 70-80 (http://www.icofcs.org/2015/papers-published-009.html).
DOI: 10.6084/m9.figshare.4252394
title: Budget for maternity care chatbot proposal

description: Budget for maternity care chatbot proposal
DOI: 10.6084/m9.figshare.4252394.v1
title: adaw_chatbot_budget.xlsx

description: Budget for maternity care chatbot proposal
DOI: 10.6084/m9.figshare.4252394.v3
title: Budget for maternity care chatbot proposal

description: Budget for maternity care chatbot proposal
DOI: 10.6084/m9.figshare.4252394.v2
title: adaw_chatbot_budget.xlsx

description: Budget for maternity care chatbot proposal
DOI: 10.6084/m9.figshare.4252217
title: wheat kernel dataset

description: This dataset is wheat kernel, which relates to the percentage of protein concentration. This NIR spectrum data is recorded at 100 wavelengths across the region 850-1050 nm. This dataset has been divided into a training set of 415 samples and a test set of 108 samples, and it is widely used as a benchmark dataset.
DOI: 10.6084/m9.figshare.4252211
title: crastallization dataset

description: This spectrum dataset is the crystallization, which relates to the concentration of LGA. It is measured by ATR-FTIR spectroscopy at different LGA solution concentrations and temperatures. The spectrum data is recorded at 215 wavelengths across the region 1000-1800. This dataset is divided into a training set of 227 samples and a test set of 75 samples. The solution concentration is measured at 9.0, 15.0, 21.0, 27.0, 33.0, 39.0 g/L and the temperature ranges from 15 to 75 °C.
DOI: 10.6084/m9.figshare.4252202
title: Yield and weight distribution of two potato cultivars grown from seed potatoes of different physiological ages

description: After seed potatoes (<i>Solanum tuberosum</i> L.) are harvested, they may be stored in sheds, in low temperature coolers or left un-lifted in the ground. This research describes the response of tuber yield and distribution (formed by the weight grade of each potato) of ‘Bondi’ and ‘Fraser’ crops planted from seed potatoes at different physiological ages generated from different combinations of these storage regimes applied in the Early and Late phases of storage. De-sprouting half of the potatoes prior to planting was used to accelerate the rate of physiological ageing, synchronise the planting material and increase the range of treatments. Total yield and number of potatoes produced were unaffected by any of the storage treatments and reflected a constant pattern of canopy development, radiation use efficiency and harvest index. The largest tubers were attained by higher rates of tuber growth which was inversely related to the number of stems per plant.
DOI: 10.6084/m9.figshare.4252211.v1
title: New draft item

description: crastallization dataset
DOI: 10.6084/m9.figshare.4252202.v1
title: Yield and weight distribution of two potato cultivars grown from seed potatoes of different physiological ages

description: After seed potatoes (<i>Solanum tuberosum</i> L.) are harvested, they may be stored in sheds, in low temperature coolers or left un-lifted in the ground. This research describes the response of tuber yield and distribution (formed by the weight grade of each potato) of ‘Bondi’ and ‘Fraser’ crops planted from seed potatoes at different physiological ages generated from different combinations of these storage regimes applied in the Early and Late phases of storage. De-sprouting half of the potatoes prior to planting was used to accelerate the rate of physiological ageing, synchronise the planting material and increase the range of treatments. Total yield and number of potatoes produced were unaffected by any of the storage treatments and reflected a constant pattern of canopy development, radiation use efficiency and harvest index. The largest tubers were attained by higher rates of tuber growth which was inversely related to the number of stems per plant.
DOI: 10.6084/m9.figshare.4252193
title: Supplemental Data Files for "Benthic Biofilm Controls on Fine Particle Dynamics in Streams". Water Resources Research

description: Benthic (streambed) biofilms metabolize a substantial fraction of particulate organic matter and nutrient inputs to streams. These microbial communities comprise a significant proportion of overall biomass in headwater streams, and they present a primary control on the transformation and export of labile organic carbon. Biofilm growth has been linked to enhanced fine particle deposition and retention, a feedback that confers a distinct advantage for the acquisition and utilization of energy sources. We quantified the influence of biofilm structure on fine particle deposition and resuspension in experimental stream mesocosms. Biofilms were grown in identical 3-m recirculating flumes over periods of 18-47 days to obtain a range of biofilm characteristics. Fluorescent, 8-mm particles were introduced to each flume, and their concentrations in the water column were monitored over a 30-minute period. We measured particle concentrations using a flow cytometer and mesoscale (10 μm to 1 cm) biofilm structure using optical coherence tomography. Particle deposition-resuspension dynamics were determined by fitting results to a stochastic mobile-immobile model, which showed retention timescales for particles within the biofilm-covered streambeds followed a power-law residence time distribution. Particle retention timescales increased with biofilm areal coverage, biofilm roughness, and mean biofilm height. Our findings suggest that biofilm structural parameters are key predictors of particle retention in streams and rivers.