cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24241123
title: Supplementary Material for: Sympathetic ophthalmia in patients with enucleation or evisceration: pathology laboratory and IRIS® Registry experience

description: Introduction: Sympathetic ophthalmia (SO) is a rare bilateral granulomatous panuveitis that can follow surgical or non-surgical ocular trauma in one eye. Because its diagnosis requires clinical-pathologic correlation, the true incidence of SO is unknown, and there is a need to understand the recent trends in risk factors and frequency of this condition. Methods: Pathology records of all enucleated or eviscerated (ENEV) eyes at three pathology laboratories were reviewed. Data collected included patient demographics, procedure indication, pathology diagnosis, and clinical history of trauma and uveitis. IRIS® Registry (Intelligent Research in Sight) was searched for all patients with SO, acquired absence of eye (AAE), and/or ENEV. Data obtained included patient demographics, ocular procedures, and preoperative diagnoses within 30 days of AAE/ENEV. Results: In the pathology laboratory setting, the incidence of SO over a 36-year period in patients who underwent ENEV was 0.2% (20/9,092); the 5-year incidence ranged from 0.0-0.3%. Among the 20 eyes with SO, the inciting event was surgical trauma in 50% (10/20), non-surgical trauma in 45% (9/20), and missing/undetermined in 5% (1/20). SO was suspected pre-operatively in 7/20 (35%) patients. Clinical concern for SO and ruptured globe were indications for ENEV in 50/9,092 (0.5%) and 872/9,092 (10%) patients, respectively. In the IRIS Registry, 0.7% (199/27,830) of patients with AAE/ENEV had diagnosis of SO. The frequency of SO between 2015-2020 was 0.01% (7,371/62,318,249); of these 7,371 cases, 199 (3%) had AAE/ENEV. In 25,975 patients with available data, injury and SO were listed as diagnoses less than 30 days prior to AAE/ENEV in 909 (4%) and 63 (0.2%) cases, respectively. Discussion/Conclusion: The frequency of SO in recent decades is low. Most cases of SO are not managed with eye removal. In histopathology-confirmed SO, surgical trauma is as frequent as non-surgical trauma as an inciting etiology of disease.
DOI: 10.6084/m9.figshare.24241123.v1
title: Supplementary Material for: Sympathetic ophthalmia in patients with enucleation or evisceration: pathology laboratory and IRIS® Registry experience

description: Introduction: Sympathetic ophthalmia (SO) is a rare bilateral granulomatous panuveitis that can follow surgical or non-surgical ocular trauma in one eye. Because its diagnosis requires clinical-pathologic correlation, the true incidence of SO is unknown, and there is a need to understand the recent trends in risk factors and frequency of this condition. Methods: Pathology records of all enucleated or eviscerated (ENEV) eyes at three pathology laboratories were reviewed. Data collected included patient demographics, procedure indication, pathology diagnosis, and clinical history of trauma and uveitis. IRIS® Registry (Intelligent Research in Sight) was searched for all patients with SO, acquired absence of eye (AAE), and/or ENEV. Data obtained included patient demographics, ocular procedures, and preoperative diagnoses within 30 days of AAE/ENEV. Results: In the pathology laboratory setting, the incidence of SO over a 36-year period in patients who underwent ENEV was 0.2% (20/9,092); the 5-year incidence ranged from 0.0-0.3%. Among the 20 eyes with SO, the inciting event was surgical trauma in 50% (10/20), non-surgical trauma in 45% (9/20), and missing/undetermined in 5% (1/20). SO was suspected pre-operatively in 7/20 (35%) patients. Clinical concern for SO and ruptured globe were indications for ENEV in 50/9,092 (0.5%) and 872/9,092 (10%) patients, respectively. In the IRIS Registry, 0.7% (199/27,830) of patients with AAE/ENEV had diagnosis of SO. The frequency of SO between 2015-2020 was 0.01% (7,371/62,318,249); of these 7,371 cases, 199 (3%) had AAE/ENEV. In 25,975 patients with available data, injury and SO were listed as diagnoses less than 30 days prior to AAE/ENEV in 909 (4%) and 63 (0.2%) cases, respectively. Discussion/Conclusion: The frequency of SO in recent decades is low. Most cases of SO are not managed with eye removal. In histopathology-confirmed SO, surgical trauma is as frequent as non-surgical trauma as an inciting etiology of disease.
DOI: 10.12770/c42527cb-8544-49c6-8416-e6697e6884eb
title: Cartographie semi-automatique des récifs d’hermelles, dans le parc naturel marin de l'estuaire de la Gironde et de la mer des Pertuis, à partir d’imagerie multi-spectrale et des connaissances de terrain. Inventaire 2023. Produit Ifremer/projet SISTER.

description: La cartographie des récifs d’hermelles, dans le parc naturel marin de l'estuaire de la Gironde et des Pertuis charentais, a été réalisée à partir (i) des résultats de classifications supervisées d’images Sentinel-2 et d’ortho-photographies aériennes multi-spectrales et (ii) des observations de terrain multi-sources complétées par le dire d’expert. Les fausses détections d’hermelles ont été dans un premier temps éliminées grâce à un contrôle visuel avant de délimiter automatiquement les zones de présence d’hermelles par détermination d’enveloppes externes.
DOI: 10.6084/m9.figshare.24441904
title: Vilella's PFD to Audio Converter

description: This program converts PDF files to audio files in PT-BR.
DOI: 10.6084/m9.figshare.24218553
title: Supplementary Material for: Non hypertensives and those with normal cholesterol more likely to have concomitant cancer amongst patients with ischemic stroke: A retrospective cross sectional registry based study

description: Introduction: Patients with cancer are known to have an increased risk of ischemic stroke (IS) around the time of their diagnosis. However, there is a paucity of data in Asian populations, and as such, we aimed to determine cancer incidence rates and patterns in Asian IS patients as well as investigate the differences in vascular risk profile of IS patients with and without concomitant cancer. Methods: We conducted a retrospective cross sectional study using data from the Singapore Stroke and Cancer registries. We defined cases as patients with IS and a cancer diagnosis 2 years before or after the index IS. Cancer incidence was determined using the same direct age-standardization method performed for the Singapore general population in the 2015 Singapore cancer report. Multivariable logistic regression was used to analyse differences in vascular risk factors. Results: Among 21,068 IS patients (mean age, 67.9±13.3 years), 6.3% (1330) were found to have concomitant cancer; 4.4% (935) had prior cancer while 1.8% (395) had cancer diagnoses within 2 years following IS. The cancer incidence among IS patients was 3393 (95% CI, 1937-4849) per 100,000 person-years compared to 219-231 per 100,000 person-years in the general population. Older age (odds ratio [OR], 1.02 [95% CI, 1.01-1.02] per year), males (OR, 1.25 [95% CI, 1.11-1.41), Chinese ethnicity (OR, 1.61 [95% CI, 1.37-1.89]) and a lower prevalence of hypertension (OR, 0.84 [95% CI, 0.73-0.97)]) and hyperlipidemia (OR, 0.53 [95% CI, 0.45-0.62]) were independently associated with cancer-related IS. Conclusions: The age-standardized cancer incidence was 15-times higher in IS patients than the general population. IS patients with concomitant cancer were older and had a lower prevalence of vascular risk factors.
DOI: 10.6084/m9.figshare.24218553.v1
title: Supplementary Material for: Non hypertensives and those with normal cholesterol more likely to have concomitant cancer amongst patients with ischemic stroke: A retrospective cross sectional registry based study

description: Introduction: Patients with cancer are known to have an increased risk of ischemic stroke (IS) around the time of their diagnosis. However, there is a paucity of data in Asian populations, and as such, we aimed to determine cancer incidence rates and patterns in Asian IS patients as well as investigate the differences in vascular risk profile of IS patients with and without concomitant cancer. Methods: We conducted a retrospective cross sectional study using data from the Singapore Stroke and Cancer registries. We defined cases as patients with IS and a cancer diagnosis 2 years before or after the index IS. Cancer incidence was determined using the same direct age-standardization method performed for the Singapore general population in the 2015 Singapore cancer report. Multivariable logistic regression was used to analyse differences in vascular risk factors. Results: Among 21,068 IS patients (mean age, 67.9±13.3 years), 6.3% (1330) were found to have concomitant cancer; 4.4% (935) had prior cancer while 1.8% (395) had cancer diagnoses within 2 years following IS. The cancer incidence among IS patients was 3393 (95% CI, 1937-4849) per 100,000 person-years compared to 219-231 per 100,000 person-years in the general population. Older age (odds ratio [OR], 1.02 [95% CI, 1.01-1.02] per year), males (OR, 1.25 [95% CI, 1.11-1.41), Chinese ethnicity (OR, 1.61 [95% CI, 1.37-1.89]) and a lower prevalence of hypertension (OR, 0.84 [95% CI, 0.73-0.97)]) and hyperlipidemia (OR, 0.53 [95% CI, 0.45-0.62]) were independently associated with cancer-related IS. Conclusions: The age-standardized cancer incidence was 15-times higher in IS patients than the general population. IS patients with concomitant cancer were older and had a lower prevalence of vascular risk factors.
DOI: 10.18112/openneuro.ds004815.v1.0.0
title: Selective attention sharpens population receptive fields in human auditory cortex
DOI: 10.6073/pasta/bd0cccb5f5c2ffb5282ae1c69bea7692
title: AOP01 Correspondence between plant traits and NEON Airborne Observatory Platform (AOP) data at Konza Prairie (2017)

description: Understanding spatial and temporal variation in plant traits is needed to accurately predict how communities and ecosystems will respond to global change. The National Observatory Ecological Network (NEON) Airborne Observation Platform (AOP) provides hyperspectral images and associated data products at numerous field sites at 1 m spatial resolution, allowing high-resolution trait mapping. However, the reliability of these data depend on establishing rigorous links with in-situ field measurements. We tested the accuracy of NEON’s readily available AOP derived data products – Leaf Area Index, Total biomass, Ecosystem structure (Canopy height model; CHM), and Canopy Nitrogen by comparing them to spatially extensive field measurements from a mesic tallgrass prairie. Correlations with AOP data products exhibited generally weak or no relationships with corresponding field measurements. The weakest relationships were between AOP Canopy Nitrogen and ground-based measures of Nitrogen, as well as the CHM and ground-based canopy height measurements. We also examined how well the full reflectance spectra (380-2500 nm), as opposed to derived products, could predict vegetation traits using partial least-squares regression models. Only one of the eight traits examined, Nitrogen, had an R2 of more than 0.25. For all vegetation traits, R2 ranged from 0.08-0.29 and the root mean square error of prediction ranged from 14-64%. Our results suggest that currently available AOP derived data products are unreliable, at least at this grassland site, and should not be used without extensive ground-based validation. Relationships using the full reflectance spectra may be more promising, although additional assessment of varying spatial scales of field and AOP data, as well as corrections and data pre-processing to improve data quality, are recommended. Finally, grassland sites may be especially challenging for airborne spectroscopy because of their high species diversity within a small area, mixed functional types of plant communities, and heterogenous mosaics of disturbance and resource availability. Remote sensing observations are one of the most promising approaches to understanding ecological patterns across space and time, yet the opportunity to engage a diverse community of NEON data users will depend on establishing empirical relationships with field measurements across a diversity of sites.
DOI: 10.5281/zenodo.10044265
title: Emission and coherent control of Levitons in graphene
DOI: 10.5281/zenodo.10044264
title: Emission and coherent control of Levitons in graphene
DOI: 10.5281/zenodo.10043889
title: WHU_Building_dataset
DOI: 10.5281/zenodo.10043888
title: WHU_Building_dataset
DOI: 10.5517/ccdc.csd.cc2fp3x5
title: CCDC 2254627: Experimental Crystal Structure Determination

description: Related Article: Xiangxiang Kong, Jing Ren, Jinlong Li, Yu Liu, Kaizhi Li|2023|Org.Lett.|25|7073|doi:10.1021/acs.orglett.3c01934
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gqzfm
title: CCDC 2286201: Experimental Crystal Structure Determination

description: Related Article: Marta Papis, Raffaella Bucci, Alessandro Contini, Maria Luisa Gelmi, Leonardo Lo Presti, Giovanni Poli, Gianluigi Broggini, Camilla Loro|2023|Org.Lett.|25|7380|doi:10.1021/acs.orglett.3c02836
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gqzgn
title: CCDC 2286202: Experimental Crystal Structure Determination

description: Related Article: Marta Papis, Raffaella Bucci, Alessandro Contini, Maria Luisa Gelmi, Leonardo Lo Presti, Giovanni Poli, Gianluigi Broggini, Camilla Loro|2023|Org.Lett.|25|7380|doi:10.1021/acs.orglett.3c02836
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13026/2d25-8g07
title: MIMIC-IV demo data in the OMOP Common Data Model

description: In this project, the MIMIC-IV demo database was used to create an
Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM)
instance. The transformation was built making use of template scripts and
concept mappings from a previous project for converting MIMIC-III data to the
OMOP CDM, while adjusting the logic and extending the mappings to be compliant
with MIMIC-IV. The desired outcome was to establish and improve ways of
transforming observational data collected in an intensive care environment to
the OMOP CDM.
DOI: 10.23708/phvojd
title: SPOT6 satellite imagery, land cover and land use classification of 5 areas in the South Province of New Caledonia

description: 5 areas of New Caledonia covered by the SPOT6 satellite are available at 1.5 meters resolution (RGB + PIR), totaling 128,4 km². These 5 areas have been manually segmented and then classified by photo-interpretation according to two types of classification: (i) classification of the bio-geophysical land cover, containing 6 different classes (buildings, bare soil, forest, low-density vegetation; water bodies, Shadows and Clouds); (ii) classification of the land use divided into 15 distinct classes. Two levels of hierarchy have been established. The first level separates four classes: the urban fabric, the natural formation, the wetlands and the shadows and clouds. The second level is described in the file "NC_NomLU.png". The SPOT6 data, recorded in the course of 2013-2014, have been radiometrically corrected and assembled into a mosaic. The data were provided as ortho-rectified tiles based on the local authorities' 10-meter DTM and projected according to the reference coordinate system RGCN91-93 / Lambert New Caledonia (EPSG:3163). Results are provided as a GeoTIFF file for each area. The goal of this dataset, is to prepare the set-up of an operational system for land use and land cover monitoring for the South Province territory of New Caledonia.
DOI: 10.13026/0p14-t007
title: MIMIC-IV-Note: Deidentified free-text clinical notes

description: The advent of large, open access text databases has driven advances in state-
of-the-art model performance in natural language processing (NLP). The
relatively limited amount of clinical data available for NLP has been cited as
a significant barrier to the field's progress. Here we describe MIMIC-IV-Note:
a collection of deidentified free-text clinical notes for patients included in
the MIMIC-IV clinical database. MIMIC-IV-Note contains 357,289 deidentified
discharge summaries from 161,403 patients admitted to the hospital and
emergency department at the Beth Israel Deaconess Medical Center in Boston,
MA, USA. The database also contains 2,471,881 deidentified radiology reports
for 256,400 patients. All notes have had protected health information removed
in accordance with the Health Insurance Portability and Accountability Act
(HIPAA) Safe Harbor provision. All notes are linkable to MIMIC-IV providing
important context to the clinical data therein. The database is intended to
stimulate research in clinical natural language processing and associated
areas.
DOI: 10.13026/7qgp-kc16
title: MIMIC-IV-Note: Deidentified free-text clinical notes

description: The advent of large, open access text databases has driven advances in state-
of-the-art model performance in natural language processing (NLP). The
relatively limited amount of clinical data available for NLP has been cited as
a significant barrier to the field's progress. Here we describe MIMIC-IV-Note:
a collection of deidentified free-text clinical notes for patients included in
the MIMIC-IV clinical database. MIMIC-IV-Note contains 331,794 deidentified
discharge summaries from 145,915 patients admitted to the hospital and
emergency department at the Beth Israel Deaconess Medical Center in Boston,
MA, USA. The database also contains 2,321,355 deidentified radiology reports
for 237,427 patients. All notes have had protected health information removed
in accordance with the Health Insurance Portability and Accountability Act
(HIPAA) Safe Harbor provision. All notes are linkable to MIMIC-IV providing
important context to the clinical data therein. The database is intended to
stimulate research in clinical natural language processing and associated
areas.
DOI: 10.20375/0000-0011-0dda-a
title: DIF_CR_0823-questionnaire.pdf
DOI: 10.20375/0000-0011-0ddb-9
title: DIF_CR_0823.sav
DOI: 10.20375/0000-0011-0ddc-8
title: DIF_CR_0823-selected results-country+war.pdf
DOI: 10.20375/0000-0011-0ddd-7
title: DIF_CR_0823-selected results-volunteering.pdf
DOI: 10.20375/0000-0011-0dde-6
title: DIF_CR_0823.xlsx
DOI: 10.21942/uva.24441913
title: Data Package Forecasting Returns instead of Prices Exacerbates Financial Bubbles

description: Raw data, experimental software and data analysis codes for the paper "Forecasting Returns instead of Prices Exacerbates Financial Bubbles"
DOI: 10.21942/uva.24441913.v1
title: Data Package Forecasting Returns instead of Prices Exacerbates Financial Bubbles

description: Raw data, experimental software and data analysis codes for the paper "Forecasting Returns instead of Prices Exacerbates Financial Bubbles"
DOI: 10.6084/m9.figshare.16912366.v15
title: antspymm helper data

description: multi-channel and time series example data for antsx processing ... with priors
DOI: 10.6084/m9.figshare.23708925.v1
title: Meta-Analysis of the <em>RAS</em> Mutation and Co-mutation in Thyroid Neoplasms: A Multicenter Study and Systematic Review.

description: <strong>Background: </strong>The prevalence, clinicopathological characteristics, and prognostic implications of <em>RAS</em> mutations and co-mutations in thyroid neoplasms remain subjects of controversy. <strong>Methods:</strong> Multicenter, systematic review and meta-analysis were applied. Centers include patients with thyroid neoplasms from the TCGA, ICGC, MSKCC, and a multi-center thyroid cancer cohort in China. Pubmed/MEDLINE and Embase libraries were included in Systematic review. The frequency distribution of <em>RAS</em> mutations and co-mutations was described. Additionally, the differences in demography, clinical-pathology, and prognosis of four distinct mutation groups ("non-mutation, single<em> RAS</em> mutation, driver mutation, and <em>RAS</em> co-mutation") were analyzed. <strong>Results:</strong> 21,370 patients with thyroid neoplasms who underwent <em>RAS</em> mutation testing were included. The overall frequency of <em>RAS</em> mutations was 19.34% (<em>NRAS</em>:12.94%&gt;<em>HRAS</em>:6.61%&gt;<em>KRAS</em>:5.00%). Among different histological types, <em>RAS</em> mutations had the highest mutation rate in follicular thyroid carcinoma (30.83%). And<em> RAS</em> co-mutations were more prevalent in tumors with lower differentiation levels. Importantly, <em>RAS</em> co-mutation, but not single <em>RAS</em> mutation significantly increased the risk of Distant Metastasis (OR=8.00; <em>P</em>&lt;.001), Advanced AJCC Stage (OR=3.32; <em>P</em>=.02), Overall Survival (OS) (HR=2.99; <em>P</em>&lt;.001), and Progression-free Survival (PFS) (HR=6.77; <em>P</em>&lt;.001) compared with the non-mutation group. In addition, we also found the driver mutation group exhibited a higher risk of Advanced Tumor Stage (OR=1.55; <em>P</em>=.02), Lymph Node Metastasis (OR=1.77; <em>P</em>=.02), Distant Metastasis (OR=3.00; <em>P</em>=.04), Advanced AJCC Stage (OR=1.78; <em>P</em>=.005), OS (HR=1.92; <em>P</em>=.02), and PFS (HR=1.79; <em>P</em>=.03). <strong>Conclusions: </strong><em>RAS </em>co-mutations were the main contributor to malignant clinicopathological characteristics or prognosis, single <em>RAS </em>mutation not. These findings have important implications for identifying high-risk patients and implementing personalized treatment strategies. <strong>Keywords: </strong><em>RAS</em>; thyroid neoplasms; Frequency; Clinical-pathological; Prognosis
DOI: 10.5281/zenodo.10044326
title: Bio triplicate KS culture samples, Iron-based and Acetate-based, electron shuttle samples
DOI: 10.5281/zenodo.10044325
title: Bio triplicate KS culture samples, Iron-based and Acetate-based, electron shuttle samples
DOI: 10.5281/zenodo.10044336
title: Boitier et al_2023_JOULE_DATASET

description: This dataset contains the underlying raw modelling data for the journal article by Boitier et al., 2023 published in Joule in November 2023.
DOI: 10.5281/zenodo.10044337
title: Boitier et al_2023_JOULE_DATASET

description: This dataset contains the underlying raw modelling data for the journal article by Boitier et al., 2023 published in Joule in November 2023.