cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17007152
title: Additional file 2 of Comparative genomic analysis of the tricarboxylic acid cycle members in four Solanaceae vegetable crops and expression pattern analysis in Solanum tuberosum

description: Detailed list of orthologous gene clusters and singletons between Solanum tuberosum, Solanum lycopersicum, Solanum melongena, Capsicum annuum, and Arabidopsis thaliana.
DOI: 10.6084/m9.figshare.17007155
title: Additional file 3 of Comparative genomic analysis of the tricarboxylic acid cycle members in four Solanaceae vegetable crops and expression pattern analysis in Solanum tuberosum

description: Detailed list of paralogous gene pairs in Solanum tuberosum, Solanum lycopersicum, Solanum melongena, Capsicum annuum, and Arabidopsis thaliana.
DOI: 10.6084/m9.figshare.23292015
title: Additional file 1 of m6A-mediated upregulation of LINC01003 regulates cell migration by targeting the CAV1/FAK signaling pathway in glioma

description: Additional file 1: Table S1. The DEGs between NC and LINC01003 smart silencer siRNA.
DOI: 10.6084/m9.figshare.7570211.v1
title: Additional file 1: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S1. Temperature data of each environment. Maximum and minimal temperature data of each environment in growing period were collected. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.17007263.v1
title: Additional file 7 of Involvement of mucosal flora and enterochromaffin cells of the caecum and descending colon in diarrhoea-predominant irritable bowel syndrome

description: Additional file 7. The OTU table and clinical parameters.
DOI: 10.6084/m9.figshare.8094308.v1
title: Supplementary Material from <i>In silico</i> simulation of a clinical trial with anti-CTLA-4 and anti-PD-L1 immunotherapies in metastatic breast cancer using a systems pharmacology model

description: Model SBML code
DOI: 10.6084/m9.figshare.7570238
title: Additional file 4: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S4. Genes detected in QTL regions. In total, 3436 genes were detected in QTL regions. (XLSX 199 kb)
DOI: 10.6084/m9.figshare.7569995.v1
title: Additional file 3: of Duplication and expression of horizontally transferred polygalacturonase genes is associated with host range expansion of mirid bugs

description: The coding sequence of PGs identified in this study. (ZIP 71 kb)
DOI: 10.6084/m9.figshare.7570241
title: Additional file 5: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S5. Significantly enriched pathways among DEGs in leaves and shoots between early- and late-flowering bulks. In total, 100 pathways were detected among these DEGs. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7570241.v1
title: Additional file 5: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S5. Significantly enriched pathways among DEGs in leaves and shoots between early- and late-flowering bulks. In total, 100 pathways were detected among these DEGs. (XLSX 16 kb)
DOI: 10.5281/zenodo.10657290
title: Scherifow/ErraticBehaviorInRPAWithSPC: ForZenodo

description: ErraticBehaviorInRPAWithSPC_for_zenodo
DOI: 10.5281/zenodo.10657291
title: Scherifow/ErraticBehaviorInRPAWithSPC: ForZenodo

description: ErraticBehaviorInRPAWithSPC_for_zenodo
DOI: 10.6084/m9.figshare.7570232.v1
title: Additional file 3: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S3. Correlation of flowering times among the six environments. 09Gi: Germany in 2009; 12Cq: Chongqing in 2012; 13Cq: Chongqing in 2013; 14Cq: Chongqing in 2014; 15Cq: Chongqing in 2015; 16Cq: Chongqing in 2016. **Represents significance at the Pâ =â 0.01 level. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7570253
title: Additional file 9: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S9. Identification of differentially expressed genes in QTL regions. L-log2 Fold change: fold changes in leaves between early- and late-flowering bulks; S-log2 Fold change: fold changes in shoots between early- and late-flowering bulks. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.17007263
title: Additional file 7 of Involvement of mucosal flora and enterochromaffin cells of the caecum and descending colon in diarrhoea-predominant irritable bowel syndrome

description: Additional file 7. The OTU table and clinical parameters.
DOI: 10.6084/m9.figshare.8105480
title: Additional file 2: of Genome-wide identification, characterization, and expression patterns of the BZR transcription factor family in sugar beet (Beta vulgaris L.)

description: Table S1. Primer sequences used for qRT-PCR. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8105483.v1
title: Additional file 3: of Genome-wide identification, characterization, and expression patterns of the BZR transcription factor family in sugar beet (Beta vulgaris L.)

description: Table S2. The expression level of BvBZR genes in two cultivars. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8105486
title: Additional file 4: of Genome-wide identification, characterization, and expression patterns of the BZR transcription factor family in sugar beet (Beta vulgaris L.)

description: Table S3. The expression level of BvBZR genes in different tissues in two cultivars. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.8105489
title: Additional file 5: of Genome-wide identification, characterization, and expression patterns of the BZR transcription factor family in sugar beet (Beta vulgaris L.)

description: Table S4. Subcellular localization prediction programs for BvBZR. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.22774322.v1
title: Additional file 1 of Epidemiological characteristics of New Delhi Metallo-β-Lactamase-producing Enterobacteriaceae in the Fourth hospital of Hebei Medical University

description: Supplementary Material 1
DOI: 10.6073/pasta/0002d6b0250d0b744f0883b09eb5a107
title: Modeling Impacts of Hurricanes on Current Aboveground Forest Carbon in New England 2020-2120

description: Nature-based climate solutions are championed as a primary tool to mitigate climate change, especially in forested regions capable of storing and sequestering vast amounts of carbon. New England is one of the most heavily forested regions in the United States (over 75% forested by land area), and forest carbon is a significant component of regional climate mitigation strategies. Large infrequent disturbances, such as hurricanes, are a major source of uncertainty and risk for policies that rely on forest carbon for climate mitigation, especially as climate change is projected to alter the intensity and geographic extent of hurricanes. To date, most research into disturbance impacts on forest carbon stocks has focused on fire. Here we show that a single hurricane in the region can down between 121-250 MMTCO2e or 4.6-9.4% of the total aboveground forest carbon, much greater than the carbon sequestered annually by New England’s forests (16 MMTCO2e yr-1). However, the emissions from the storms are not instantaneous; it takes approximately 19 years for the downed carbon to become a net emission, and 100 years for 90% of the downed carbon to be emitted. Using the HURRECON and EXPOS models to reconstruct hurricanes across a range of historical and projected wind speeds, we find that an 8% and 16% increase in hurricane wind speeds leads to a 10.7 and 24.8 fold increase in the extent of high-severity damaged areas (widespread tree mortality). Increased wind speed also leads to unprecedented geographical shifts in damage; both inland and northward into heavily forested regions traditionally unaffected by hurricanes. Given that a single hurricane can emit the equivalent of 10+ years of carbon sequestered by forests in New England, the status of these forests as a durable carbon sink is uncertain. Understanding the risks to forest carbon stocks from large infrequent disturbances is necessary for decision-makers relying on forests as a nature-based climate solution.
 This data set contains the aggregated modeling outputs of our modeling efforts summarized by state, county, and ecoregion, as well as the scripts to analyze and generate the data.
DOI: 10.6084/m9.figshare.22774322
title: Additional file 1 of Epidemiological characteristics of New Delhi Metallo-β-Lactamase-producing Enterobacteriaceae in the Fourth hospital of Hebei Medical University

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.11775519
title: Additional file 5 of Shear stress activates ATOH8 via autocrine VEGF promoting glycolysis dependent-survival of colorectal cancer cells in the circulation

description: Additional file 5: Table S3. The results of ssGESA conducted in GSE131418.
DOI: 10.6084/m9.figshare.11775519.v1
title: Additional file 5 of Shear stress activates ATOH8 via autocrine VEGF promoting glycolysis dependent-survival of colorectal cancer cells in the circulation

description: Additional file 5: Table S3. The results of ssGESA conducted in GSE131418.
DOI: 10.6084/m9.figshare.23298956.v1
title: Additional file 3 of ANKRD29, as a new prognostic and immunological biomarker of non–small cell lung cancer, inhibits cell growth and migration by regulating MAPK signaling pathway

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.23298959
title: Additional file 4 of ANKRD29, as a new prognostic and immunological biomarker of non–small cell lung cancer, inhibits cell growth and migration by regulating MAPK signaling pathway

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.8105510.v1
title: Additional file 13: of Transcriptome and physiological analyses for revealing genes involved in wheat response to endoplasmic reticulum stress

description: Table S8. Prediction of wheat transcription factors. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.11775522
title: Additional file 6 of Shear stress activates ATOH8 via autocrine VEGF promoting glycolysis dependent-survival of colorectal cancer cells in the circulation

description: Additional file 6: Table S4. Genes correlated with increased ATOH8 expression in GSE131418.
DOI: 10.6084/m9.figshare.11775522.v1
title: Additional file 6 of Shear stress activates ATOH8 via autocrine VEGF promoting glycolysis dependent-survival of colorectal cancer cells in the circulation

description: Additional file 6: Table S4. Genes correlated with increased ATOH8 expression in GSE131418.
DOI: 10.6084/m9.figshare.22774352.v1
title: Additional file 5 of Short-term environmental nitrogen dioxide exposure and neurology clinic visits for headaches, a time-series study in Wuhan, China

description: Additional file 5.
DOI: 10.6084/m9.figshare.11775531
title: Additional file 7 of Shear stress activates ATOH8 via autocrine VEGF promoting glycolysis dependent-survival of colorectal cancer cells in the circulation

description: Additional file 7: Table S5. List of cytokines and cytokine receptor genes in GSEA.
DOI: 10.6084/m9.figshare.11775531.v1
title: Additional file 7 of Shear stress activates ATOH8 via autocrine VEGF promoting glycolysis dependent-survival of colorectal cancer cells in the circulation

description: Additional file 7: Table S5. List of cytokines and cytokine receptor genes in GSEA.
DOI: 10.6084/m9.figshare.11775537
title: Additional file 2 of Identification and characterization of methylation-mediated transcriptional dysregulation dictate methylation roles in preeclampsia

description: Additional file 2: Table S1. Experimentally verified PE-associated genes.
DOI: 10.6084/m9.figshare.11775537.v1
title: Additional file 2 of Identification and characterization of methylation-mediated transcriptional dysregulation dictate methylation roles in preeclampsia

description: Additional file 2: Table S1. Experimentally verified PE-associated genes.
DOI: 10.6084/m9.figshare.8094764.v1
title: Association between testosterone with type 2 diabetes in adult males, a meta-analysis and trial sequential analysis

description: We performed this meta-analysis to assess serum testosterone changes in adult males with Type 2 diabetes (T2DM). PubMed, Embase, Web of Science, and Cochrane Library were searched to identify qualified studies. Pooled weighted mean differences (WMDs) with 95% confidence intervals (CIs) were utilized to test the changes of total testosterone (TT), free testosterone (FT) and sex hormone-binding globulin (SHBG) in patients with T2DM. Besides, trial sequential analysis was used to verify the pooled results. A total of 56 studies were enrolled in our meta-analysis. Meta-analyses of the cross-sectional studies showed that patients with T2DM has significant decreases in TT (WMD: −2.98, 95%CI: −3.48 to −2.47), FT (WMD: −32.82, 95%CI: −39.70 to −25.95) and SHBG (WMD: −2.47, 95%CI: −3.93 to −1.02). In terms of the prospective studies, our results showed decreases in TT (WMD: −2.35, 95%CI: −3.24 to −1.46), FT (WMD: −25.96, 95%CI: −83.98 to 32.05), and SHBG (WMD: −10.06, 95%CI: −13.29 to −6.84) in patients with T2DM. By trial sequential analyses, the findings in current meta-analysis were based on reliable evidence. Our results indicate that patients with T2DM have lower serum TT, FT, and SHBG levels.
DOI: 10.5258/soton/d2943
title: Dataset supporting the publication "Effects of surface roughness on the propulsive performance of pitching foils"

description: Dataset supporting the publication "Effects of surface roughness on the propulsive performance of pitching foils" to be published in the Journal of Fluid Mechanics 10.1017/jfm.2023.1009
DOI: 10.6084/m9.figshare.7581305
title: Additional file 16: of Differential co-expression networks of long non-coding RNAs and mRNAs in Cleistogenes songorica under water stress and during recovery

description: Putative targets and target mimics of lncRNAs for miRNA in C. songorica. (XLSX 29â kb)
DOI: 10.6084/m9.figshare.23298947
title: Additional file 1 of Do ethnic chinese older adults with epithelial ovarian cancer survive a poorer prognosis?

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.7570247
title: Additional file 7: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S7. Identification of differentially expressed FTR genes in B. napus in leaves and shoots between early- and late-flowering bulks. In total, 105 FTR genes were differentially expressed between two bulks. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.1289866
title: Activation of autophagy via Ca<sup>2+</sup>-dependent AMPK/mTOR pathway in rat notochordal cells is a cellular adaptation under hyperosmotic stress

description: Nucleus pulposus (NP) cells experience hyperosmotic stress in spinal discs; however, how these cells can survive in the hostile microenvironment remains unclear. Autophagy has been suggested to maintain cellular homeostasis under different stresses by degrading the cytoplasmic proteins and organelles. Here, we explored whether autophagy is a cellular adaptation in rat notochordal cells under hyperosmotic stress. Hyperosmotic stress was found to activate autophagy in a dose- and time-dependent manner. SQSTM1/P62 expression was decreased as the autophagy level increased. Transient Ca<sup>2+</sup> influx from intracellular stores and extracellular space was stimulated by hyperosmotic stress. Activation of AMPK and inhibition of p70S6K were observed under hyperosmotic conditions. However, intercellular Ca<sup>2+</sup> chelation inhibited the increase of LC3-II and partly reversed the decrease of p70S6K. Hyperosmotic stress decreased cell viability and promoted apoptosis. Inhibition of autophagy led to SQSTM1/P62 accumulation, reduced cell viability, and accelerated apoptosis in notochordal cells under this condition. These evidences suggest that autophagy induction via the Ca<sup>2+</sup>-dependent AMPK/mTOR pathway might occur as an adaptation mechanism for notochordal cells under hyperosmotic stress. Thus, activating autophagy might be a promising approach to improve viability of notochordal cells in intervertebral discs.
DOI: 10.6084/m9.figshare.7581323
title: Additional file 2: of Differential co-expression networks of long non-coding RNAs and mRNAs in Cleistogenes songorica under water stress and during recovery

description: RNA-seq data for eighteen samples. (XLSX 10â kb)
DOI: 10.6084/m9.figshare.7570250
title: Additional file 8: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S8. Expression analysis of genes of QTL regions in the four samples using RNA-Seq data. EL: leaves of early-flowering bulks; LL: leaves of early-flowering bulks; ES: shoots of late-flowering bulks; LS: shoots of late-flowering bulks. (XLSX 242 kb)
DOI: 10.6084/m9.figshare.7570217.v1
title: Additional file 2: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S2. Primers used for qRT-PCR verification. In total, 47 DEGs were selected to confirm the accuracy and reliability of RNA-Seq data used in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.22774387
title: Additional file 2 of Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data

description: Additional file 2: Table S1. Summary of filtering steps applied to each dataset.
DOI: 10.6084/m9.figshare.7570211
title: Additional file 1: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S1. Temperature data of each environment. Maximum and minimal temperature data of each environment in growing period were collected. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.7570217
title: Additional file 2: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S2. Primers used for qRT-PCR verification. In total, 47 DEGs were selected to confirm the accuracy and reliability of RNA-Seq data used in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7570232
title: Additional file 3: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S3. Correlation of flowering times among the six environments. 09Gi: Germany in 2009; 12Cq: Chongqing in 2012; 13Cq: Chongqing in 2013; 14Cq: Chongqing in 2014; 15Cq: Chongqing in 2015; 16Cq: Chongqing in 2016. **Represents significance at the Pâ =â 0.01 level. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7570253.v1
title: Additional file 9: of Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L

description: Table S9. Identification of differentially expressed genes in QTL regions. L-log2 Fold change: fold changes in leaves between early- and late-flowering bulks; S-log2 Fold change: fold changes in shoots between early- and late-flowering bulks. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.23292018
title: Additional file 2 of m6A-mediated upregulation of LINC01003 regulates cell migration by targeting the CAV1/FAK signaling pathway in glioma

description: Additional file 2: Table S2. Top 20 KEGG enrichment pathways in the downregulated mRNAs.
DOI: 10.6084/m9.figshare.7570475
title: Additional file 10: of Intratumor heterogeneity comparison among different subtypes of non-small-cell lung cancer through multi-region tissue and matched ctDNA sequencing

description: Supplementary Sequencing datasets. (XLSX 416 kb)
DOI: 10.13145/bacdive10725.20191129.4.1
title: Nocardia seriolae Kudo et al. 1988

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10726.20191129.4.1
title: Nocardia pseudobrasiliensis Ruimy et al. 1996

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10727.20191129.4.1
title: Nocardia salmonicida (ex Rucker 1949) Isik et al. 1999

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10728.20191129.4.1
title: Nocardia paucivorans Yassin et al. 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10729.20191129.4.1
title: Nocardia paucivorans Yassin et al. 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10730.20191129.4.1
title: Nocardia paucivorans Yassin et al. 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10731.20191129.4.1
title: Nocardia abscessus Yassin et al. 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10732.20191129.4.1
title: Nocardia abscessus Yassin et al. 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10733.20191129.4.1
title: Nocardia flavorosea Chun et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10734.20191129.4.1
title: Nocardia nova Tsukamura 1983 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10735.20191129.4.1
title: Nocardia nova Tsukamura 1983 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10736.20191129.4.1
title: Nocardia nova Tsukamura 1983 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10737.20191129.4.1
title: Nocardia nova Tsukamura 1983 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10738.20191129.4.1
title: Nocardia nova Tsukamura 1983 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10739.20191129.4.1
title: Nocardia nova Tsukamura 1983 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10740.20191129.4.1
title: Nocardia nova Tsukamura 1983 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10741.20191129.4.1
title: Nocardia nova Tsukamura 1983 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive10742.20191129.4.1
title: Nocardia nova Tsukamura 1983 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.