cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gb8j3w
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astrapogon puncticulatus (Poey, 1867)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 144 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038246-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3635768_d1.v1
title: Additional file 4: Table S2. of CSN and CAVA: variant annotation tools for rapid, robust next-generation sequencing analysis in the clinical setting

description: Comparison of clinical (Sanger) and NGS annotation of BRCA1 and BRCA2 mutations. (ODS 22 kb)
DOI: 10.6084/m9.figshare.c.3635768_d3.v1
title: Additional file 3: Table S1. of CSN and CAVA: variant annotation tools for rapid, robust next-generation sequencing analysis in the clinical setting

description: Indels in the exome of an individual in the ICR1000 series. (ODS 33 kb)
DOI: 10.6084/m9.figshare.c.3635777_d2.v1
title: Additional file 4: of Genome- and epigenome-wide association study of hypertriglyceridemic waist in Mexican American families

description: This file contains Supplementary Table 3. (XLSX 1982 KB)
DOI: 10.6084/m9.figshare.c.3635777_d3.v1
title: Additional file 3: of Genome- and epigenome-wide association study of hypertriglyceridemic waist in Mexican American families

description: This file contains Supplementary Table 2. (XLSX 314 MB)
DOI: 10.6084/m9.figshare.c.3635777_d4.v1
title: Additional file 1: of Genome- and epigenome-wide association study of hypertriglyceridemic waist in Mexican American families

description: This file contains Supplementary TableÂ 1. (XLSX 782 MB)
DOI: 10.6084/m9.figshare.c.3636323_d2.v1
title: Additional file 3: Table S5. of Replicate exome-sequencing in a multiple-generation family: improved interpretation of next-generation sequencing data

description: Evaluation of coverage of targeted exons with high GC content. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3636323_d3.v1
title: Additional file 2: Table S2. of Replicate exome-sequencing in a multiple-generation family: improved interpretation of next-generation sequencing data

description: Titration of percentage target exome sequenced as a function of depth of sequencing thresholds. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3636329_d1.v1
title: Additional file 2: Table S1. of A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63

description: Genes changed &gt;3-fold with BRG1/BRM knockdown. Table S2 Shared genes controlled by both BAF and p63 with fold changeâ  &gt;â  3. Table S3 Sequencing depth of the ATAC-seq, RNA-seq, and ChIP-seq data generated for this study. (XLSX 78 kb)
DOI: 10.6084/m9.figshare.c.3636335_d1.v1
title: Additional file 5: of Identification of candidate genes involved in Witches’ broom disease resistance in a segregating mapping population of Theobroma cacao L. in Brazil

description: Location of the SNP markers on the integrated linkage map. (XLS 278 kb)
DOI: 10.6084/m9.figshare.28049657
title: Cotton Flower Tracking Dataset

description: This contains the portion of the cotton flower dataset with full tracking annotations. It is organized in YOLO format with an extra column for the track ID, similar to how YOLOv8 outputs tracking results. That is, the label format is:class, center_x, center_y, width, height, track_idIt is separated into 46 individual frame sequences, with sequences divided between training, testing, and validation splits.
DOI: 10.15468/dl.eq4gkf
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astrapogon stellatus (Cope, 1867)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 39 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038247-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636776_d1.v1
title: Additional file 2: of Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data

description: Detailed spearman correlation coefficient results for all normalization methods. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.28049831
title: Cotton Flower Detection Dataset

description: This contains the portion of the cotton flower dataset with bounding box annotations. It is organized in YOLO format. That is, the label format is:class, center_x, center_y, width, heightThis dataset has training, testing, and validation splits. The data in the test and validation splits are from different years than the training data. They also contain some images taken with a UAV, which is a modality not present in the training dataset at all.
DOI: 10.6084/m9.figshare.c.3637289_d4.v1
title: Additional file 13: Tables S10. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: GO term enrichment analysis of male- and female-biased PERNI transcripts with fold-changeâ  &gt;â  2. (XLS 47Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d5.v1
title: Additional file 9: Table S7. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: GO term enrichment analysis of the transcripts of the PERNI data set with FPKM valuesâ  &gt;â  100. (XLS 44Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d8.v1
title: Additional file 17: Table S12. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: Pair-wise Ka/Ks calculation between P. perniciosus and P. papatasi and P. perniciosus and L. longipalpis set of orthologs. (XLS 2344Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d10.v1
title: Additional file 7: Table S5. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: Putative long non-coding and novel protein coding genes of the PERNI data set. (XLS 340Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d12.v1
title: Additional file 12: Table S9. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: Annotation table of the sex-biased PERNI transcripts. (XLS 8646Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d13.v1
title: Additional file 15: Table S11. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: Selected PERNI transcripts for semi-quantitative PCR validation of the sex-biased expression. (XLS 51Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d14.v1
title: Additional file 4: Table S2. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: GO terms of the annotated transcripts of the PERNI data set. (XLS 594Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d15.v1
title: Additional file 1: Table S1. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: Ortholog hit ratio calculation of the transcriptome of P. perniciosus respect to D. melanogaster and P. papatasi. (XLS 876Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d16.v1
title: Additional file 6: Table S4. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: Summary of the RepeatMasker search for TEs in the sand flies transcriptomes. (XLS 42Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d18.v1
title: Additional file 5: Table S3. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: GO term enrichment analysis of the transcriptomes of P. perniciosus, P. papatasi and L. longipalpis. (XLS 59Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d17.v1
title: Additional file 8: Table S6. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: FPKM values of the PERNI data set. (XLS 2310Â kb)
DOI: 10.6084/m9.figshare.c.3637301_d1.v1
title: Additional file 4: of Additive transcriptomic variation associated with reproductive traits suggest local adaptation in a recently settled population of the Pacific oyster, Crassostrea gigas

description: eP ST outliers for male and females oysters. 53 and 69 outliers ePST mRNAs for male and female oysters respectively, Genbank accession number, putative annotations, E-values, fold changes and GO associated terms. (XLS 160 KB)
DOI: 10.6084/m9.figshare.c.3637301_d2.v1
title: Additional file 3: of Additive transcriptomic variation associated with reproductive traits suggest local adaptation in a recently settled population of the Pacific oyster, Crassostrea gigas

description: ANOVA sex significant transcripts. 80 mRNA differentially expressed in the two-way ANOVA between French and Danish progeny, Genbank accession number, putative annotations E values and GO associated terms. (XLS 132 kb)
DOI: 10.6084/m9.figshare.c.3637301_d3.v1
title: Additional file 2: of Additive transcriptomic variation associated with reproductive traits suggest local adaptation in a recently settled population of the Pacific oyster, Crassostrea gigas

description: GO terms of RDA sex significant transcripts. GO associated terms for transcripts whose contribution accounted for the 0.1 and 99.9 percentile of the RDA2 axis distribution scores. (XLS 179 kb)
DOI: 10.6084/m9.figshare.c.3637301_d4.v1
title: Additional file 1: of Additive transcriptomic variation associated with reproductive traits suggest local adaptation in a recently settled population of the Pacific oyster, Crassostrea gigas

description: Script used for RDA, ANOVA and eP ST calculations. (R 10 kb)
DOI: 10.6084/m9.figshare.c.3637805_d1.v1
title: MOESM1 of The second highest chromosome count among vertebrates is observed in cultured sturgeon and is associated with genome plasticity

description: Additional file 1: Table S1. Genotyping results with highlighted private dam and sire microsatellite alleles observed at all analysed loci for parental individuals, and for pentaploid (5n) and heptaploid (7n) full siblings.
DOI: 10.15468/dl.7tsmg4
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astronesthes niger Richardson, 1845",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 39 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038248-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3637829_d1.v1
title: MOESM1 of Comparative transcriptomics of the nematode gut identifies global shifts in feeding mode and pathogen susceptibility

description: Additional file 1. Gene lists of intestine-enriched genes.
DOI: 10.6084/m9.figshare.c.3637844_d1.v1
title: Additional file 5: of Phase I clinical trial of autologous NK cell therapy using novel expansion method in patients with advanced digestive cancer

description: Table S3. Change in cytotoxic activity of PBMCs against K-562 cells during and after NK cell therapy.
DOI: 10.6084/m9.figshare.c.3638600_d2.v1
title: MOESM1 of Long noncoding RNA dysregulation in ischemic heart failure

description: Additional file 1: Table S1. Disease association of the lncRNAs of the SBI "Disease-related human lncRNA profiler" plate. Table S2: Sequences and gene alignment of the primers designed for validation. Table S3: Single nucleotide polymorphism (SNPs) analysis of CDKN2-AS1. Table S4: Differentially expressed protein coding genes neighboring the HF modulated lncRNAs. Table S5: Non end-stage HF LncRNAs signature in end-stage HF patients. Table S6: HF-modulated mRNAs correlating with HF-modulated lncRNAs. Table S7: Pathway enrichment analysis of HF-modulated mRNAs correlating with HF-modulated lncRNAs. Table S8: Significantly enriched pathways in common between LV and PBMC datasets in HF patients.
DOI: 10.6084/m9.figshare.c.3638603_d1.v1
title: MOESM2 of Oestrous cycle-dependent equine uterine immune response to induced infectious endometritis

description: Additional file 2. Statistical results for gene expression levels of all analysed genes. ANOVA, Bonferroni and interaction model results for the pathogen recognition receptors TLR2, TLR4, NLRC5, the chemokines CCL2, CXCL9, CXCL10, CXCL11, the tissue inhibitor of metallopeptidases (TIMP1) and the antimicrobial peptides lysozyme, lipocalin (LCN2), lactoferrin, uteroferrin, secretory leukoprotease inhibitor (SLPI), uterocalin P19, secreted phospholipase A2 (sPLA2) and equine Î˛-defensin 1 (EBD1).
DOI: 10.6084/m9.figshare.c.3638609_d2.v1
title: Additional file 1: Table S1. of Support for targeted sampling of red fox (Vulpes vulpes) feces in Sweden: a method to improve the probability of finding Echinococcus multilocularis

description: Summary of fox feces collected by region, season, year and method. (XLSX 11 kb)
DOI: 10.15468/dl.r95q35
title: Occurrence Download

description: A dataset containing 315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astroscopus y-graecum (Cuvier, 1829)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 315 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038249-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3639131_d1.v1
title: MOESM2 of Epigenetic origin of adaptive phenotypic variants in the human blood fluke Schistosoma mansoni

description: Additional file 2. TSA treatment results. This table contains results of all TSA experiments.
DOI: 10.6084/m9.figshare.c.3639134_d1.v1
title: Additional file 1: Table S1. of Population genomics of pearl millet (Pennisetum glaucum (L.) R. Br.): Comparative analysis of global accessions and Senegalese landraces

description: The germplasm used in this study. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3639461_d2.v1
title: Additional file 1: of Observational, prospective, multicentre study to evaluate the effects of counselling on the choice of combined hormonal contraceptives in Italyâ  the ECOS (Educational COunselling effectS) study

description: Partecipating centers. The file includes the complete list of the participating centers, together with the name of the principal investigator. (XLS 100 kb)
DOI: 10.6084/m9.figshare.c.3639467_d1.v1
title: Additional file 9: of CDH1 and IL1-beta expression dictates FAK and MAPKK-dependent cross-talk between cancer cells and human mesenchymal stem cells

description: Is Table S5 presenting the top pathways for MCF7 versus HT-29. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3639467_d2.v1
title: Additional file 4: of CDH1 and IL1-beta expression dictates FAK and MAPKK-dependent cross-talk between cancer cells and human mesenchymal stem cells

description: Is Table S4 presenting genes differentially expressed between positive and negative tumors. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3639467_d5.v1
title: Additional file 3: of CDH1 and IL1-beta expression dictates FAK and MAPKK-dependent cross-talk between cancer cells and human mesenchymal stem cells

description: Is Table S3 presenting the top enriched pathways in upregulated genes in sorted MSCs from MCF7 and BT-20 co-cultures. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3639467_d9.v1
title: Additional file 2: of CDH1 and IL1-beta expression dictates FAK and MAPKK-dependent cross-talk between cancer cells and human mesenchymal stem cells

description: Is Table S2 presenting upregulated genes in sorted MSCs from MCF7 and BT-20 co-cultures. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3639743_d1.v1
title: Additional file 8: of Transcriptome profiling of a Rhizobium leguminosarum bv. trifolii rosR mutant reveals the role of the transcriptional regulator RosR in motility, synthesis of cell-surface components, and other cellular processes

description: Sequence motifs identified in regulatory regions of the genes differentially expressed in the rosR mutant and the wild-type strain, which show a significant similarity to the RosR-box sequence. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3639743_d9.v1
title: Additional file 3: of Transcriptome profiling of a Rhizobium leguminosarum bv. trifolii rosR mutant reveals the role of the transcriptional regulator RosR in motility, synthesis of cell-surface components, and other cellular processes

description: A list of coding sequences in R. leguminosarum bv. trifolii, for which differences in the expression levels between the Rt2472 rosR mutant (mut) and the wild-type strain Rt24.2 (wt) were established (log 2 fold change &gt;2), with classification of the sequences into COG groups and putative functions of the encoded proteins. (XLSX 148 kb)
DOI: 10.15468/dl.dsp46m
title: Occurrence Download

description: A dataset containing 315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astroscopus y-graecum (Cuvier, 1829)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 315 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038250-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3639770_d2.v1
title: Additional file 2: of Overexpression of Homer1a in the basal and lateral amygdala impairs fear conditioning and induces an autism-like social impairment

description: Table of microarray data from VPA exposed rats compared to saline exposed control animals . Gene lists were created based on the criteria that the gene must exhibit an average fold difference of 1.5 fold or greater in pair wise comparisons between VPA and saline amygdala samples with a t-test p-value of pâ
DOI: 10.6084/m9.figshare.c.3639785_d4.v1
title: Additional file 5: Table S5. of The impact of tumor profiling approaches and genomic data strategies for cancer precision medicine

description: All unmatched mutation calls (due to size, due to size, see Additional file 4: Table S4 for matched mutation calls). (XLSX 11186 kb)
DOI: 10.6084/m9.figshare.c.3640112_d1.v1
title: MOESM1 of Fire-severity effects on plant–fungal interactions after a novel tundra wildfire disturbance: implications for arctic shrub and tree migration

description: Additional file 1. Site descriptions for eight sampling sites grouped by fire-severity categories within the Anaktuvuk River Fire burn scar. We classified vegetation communities using the Viereck (1992) vegetation classification: 2C2A = open low scrub mixed shrub-sedge tussock tundra, 2C2H = open low scrub willow-sedge shrub tundra, 3A21 = mesic graminoid herbaceous sedge-birch tundra, 3A2D = mesic graminoid herbaceous tussock tundra, and 3A3 = wet graminoid herbaceous tundra. Fire-severity categories were assigned based on composite burn index and field descriptions.
DOI: 10.6084/m9.figshare.c.3640112_d5.v1
title: MOESM6 of Fire-severity effects on plantâ  fungal interactions after a novel tundra wildfire disturbance: implications for arctic shrub and tree migration

description: Additional file 6. Description of final solutions for nonmetric multidimensional scaling ordinations of fungal composition for all seedlings and treatment x species combinations.
DOI: 10.6084/m9.figshare.c.3640112_d7.v1
title: MOESM4 of Fire-severity effects on plantâ  fungal interactions after a novel tundra wildfire disturbance: implications for arctic shrub and tree migration

description: Additional file 4. Operational Taxonomic Units at 97Â % sequence similarity for fungi associated with seedlings inoculated with soils from the Anaktuvuk River Fire.
DOI: 10.6084/m9.figshare.c.3640112_d6.v1
title: MOESM3 of Fire-severity effects on plantâ  fungal interactions after a novel tundra wildfire disturbance: implications for arctic shrub and tree migration

description: Additional file 3. Biological key showing ribotype ID, abundance, range of fungal ITS fragment lengths, associated OTU identity, and the best match description as reported in GenBank.
DOI: 10.6084/m9.figshare.c.3640310_d1.v1
title: Additional file 4: Table S2. of Expression of F-actin-capping protein subunit beta, CAPZB, is associated with cell growth and motility in epithelioid sarcoma

description: Results of the network analyses using protein profiles of CAPZB-regulated proteins in the ESX cells. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3640310_d2.v1
title: Additional file 3: Table S1. of Expression of F-actin-capping protein subunit beta, CAPZB, is associated with cell growth and motility in epithelioid sarcoma

description: Results of the network analyses using protein profiles of CAPZB-regulated proteins in the VAESBJ cells. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3640316_d1.v1
title: Additional file 1: Table S1. of Decoding breast cancer tissueâ  stroma interactions using species-specific sequencing

description: Fisherâ  s exact test for count data (R). (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3640316_d2.v1
title: Additional file 6: Table S5. of Decoding breast cancer tissueâ  stroma interactions using species-specific sequencing

description: Optimization of S3 parameters. (XLS 65 kb)
DOI: 10.6084/m9.figshare.c.3640316_d3.v1
title: Additional file 7: Table S6. of Decoding breast cancer tissueâ  stroma interactions using species-specific sequencing

description: Gene Ontology. (XLSX 270 kb)
DOI: 10.6084/m9.figshare.c.3640316_d5.v1
title: Additional file 2: Table S2. of Decoding breast cancer tissueâ  stroma interactions using species-specific sequencing

description: p-values and FDR from SAMlike_test_on_rpkms.py. (XLSX 14232 kb)
DOI: 10.6084/m9.figshare.c.3640316_d9.v1
title: Additional file 5: Table S4. of Decoding breast cancer tissueâ  stroma interactions using species-specific sequencing

description: Gene lists from in vitro comparisons. (XLSX 53 kb)