cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17137061.v1
title: Oxidative stress induces Ser 2 dephosphorylation of the RNA polymerase II CTD and premature transcription termination

description: The C-terminal domain (CTD) of the largest subunit of RNA polymerase II (Pol II) consists of YSPTSPS heptapeptide repeats, and the phosphorylation status of the repeats controls multiple transcriptional steps and co-transcriptional events. However, how CTD phosphorylation status responds to distinct environmental stresses is not fully understood. In this study, we found that a drastic reduction in phosphorylation of a subset of Ser2 residues occurs rapidly but transiently following exposure to H<sub>2</sub>O<sub>2</sub>. ChIP analysis indicated that Ser2-P, and to a lesser extent Tyr1-P was reduced only at the gene 3’ end. Significantly, the levels of polyadenylation factor CstF77, as well as Pol II, were also reduced. However, no increase in uncleaved or readthrough RNA products was observed, suggesting transcribing Pol II prematurely terminates at the gene end in response to H<sub>2</sub>O<sub>2</sub>. Further analysis found that the reduction of Ser2-P is, at least in part, regulated by CK2 but independent of FCP1 and other known Ser2 phosphatases. Finally, the H<sub>2</sub>O<sub>2</sub> treatment also affected snRNA 3’ processing although surprisingly the U2 processing was not impaired. Together, our data suggest that H<sub>2</sub>O<sub>2</sub> exposure creates a unique CTD phosphorylation state that rapidly alters transcription to deal with acute oxidative stress, perhaps creating a novel “emergency brake” mechanism to transiently dampen gene expression.
DOI: 10.6084/m9.figshare.12980840
title: The effect of chronotype and time of assessment on cognitive performance

description: Standard cognitive measures are often applied at various times of the day to assess cognitive deficits in patients with neuropsychiatric and neurodegenerative disorders, irrespective of their chronotype. In this study, we aimed to determine whether the subjectively nonpreferred time of an assessment might be a crucial factor in persons with extreme chronotypes. We compared morning (08:00) and evening (20:00) cognitive performance in extreme morning, extreme evening, and intermediate chronotypes determined by the Morningness-Eveningness Questionnaire, supported by actigraphy and peripheral temperature measurement. The assessment sessions were performed in pseudorandom order over two consecutive weekend days. We administered the commonly used test battery for neurocognitive assessment comprised of tasks aimed mainly at attention, processing speed, working memory, and declarative memory. The time of assessment influenced the declarative memory measures, whereas the chronotype-specific differences occurred only in the Stroop colour-naming subtest aimed at processing speed. The observed effects should be considered in routine clinical practice because they might cause misrepresentation of the results obtained during improperly timed cognitive assessment. Our results also point towards similarity of doves and owls in contrast to larks in cognitive performance, suggesting that early morning assessments should also be considered in cases of intermediate chronotypes.
DOI: 10.34740/kaggle/ds/2040015
title: Data from visits to the trough of Nellore cattle
DOI: 10.6084/m9.figshare.19535515
title: Statistical Tables

description: Results from statistical analysis of datasets in this project.
DOI: 10.6084/m9.figshare.19535515.v1
title: Statistical Tables

description: Results from statistical analysis of datasets in this project.
DOI: 10.5281/zenodo.6446622
title: Allometric data for petioles from 43 angiosperm species

description: 935 leaves from 43 species for a mean of ~22 individuals per species, were collected during the summer of 2007 within the greater Atlanta region (Lat/Long 33 75 – 84 38). Data were collected initially as part of a study on leaf allometry (Price et al., 2009), but only petiole diameters were used; petiole length, surface area and volume were not reported nor interpreted. Species were chosen based on local availability. For each fresh leaf, petiole length was measured with a ruler, and petiole diameter was measure twice at the base with digital calipers. For each species, as large a range of leaf and petiole sizes as could be found was collected, with representative sampling across the size range. Each petiole was assumed to have a cylindrical shape, and surface area and volume were estimated from the length and diameter measures using standard geometric formulas.
DOI: 10.5281/zenodo.6446621
title: Allometric data for petioles from 43 angiosperm species

description: 935 leaves from 43 species for a mean of ~22 individuals per species, were collected during the summer of 2007 within the greater Atlanta region (Lat/Long 33 75 – 84 38). Data were collected initially as part of a study on leaf allometry (Price et al., 2009), but only petiole diameters were used; petiole length, surface area and volume were not reported nor interpreted. Species were chosen based on local availability. For each fresh leaf, petiole length was measured with a ruler, and petiole diameter was measure twice at the base with digital calipers. For each species, as large a range of leaf and petiole sizes as could be found was collected, with representative sampling across the size range. Each petiole was assumed to have a cylindrical shape, and surface area and volume were estimated from the length and diameter measures using standard geometric formulas.
DOI: 10.6084/m9.figshare.19574557
title: Effects of social media on body dissatisfaction in junior high school girls

description: The date of junior high school students about body dissatisfaction.
DOI: 10.11588/data/zcxhoe/rignvu
title: gaiaedr3_basti.zip

description: :unav
DOI: 10.48370/ofd/bl141n
title: Stictoleptura tonsa (K. et J. Daniel), C-685

description: Coleoptera collection
DOI: 10.11588/data/zcxhoe/7xcjqp
title: multiband_padova.zip

description: :unav
DOI: 10.11588/data/zcxhoe/3t8wv4
title: multiband_mist.zip
DOI: 10.11588/data/zcxhoe
title: JJ-model isochrone set: PARSEC, MIST, and BaSTI stellar evolution

description: This dataset contains three alternative isochrone grids generated by different stellar evolution codes - PARSEC (Padova), MIST, and BaSTI. Grids cover a wide range of metallicities from approx. -2.6 to +0.5 (60-62 individual metallicities) and ages from 0 to 13 Gyr with a fine step of 50 Myr. Included photometric systems are UBVRIJHK+Gaia_DR2+Gaia_EDR3 (Padova), UBVRI+2MASS+Gaia_DR2+Gaia_EDR3 (MIST), and Gaia_EDR3 (BaSTI). Isochrone grids are part of the python package jjmodel.
DOI: 10.48370/ofd/k2brxe
title: Stictoleptura pallens (Brullé, 1832), C-686

description: Coleoptera collection
DOI: 10.25345/c52j6879q
title: MassIVE MSV000089235 - Proteomic insight into the interaction of Paenibacillus larvae with honey bee larvae before capping collected from an American foulbrood outbreak
title: The samples used in this study originated from colonies of managed European honey bees (A. mellifera) that were at the epicenter of an AFB outbreak in 2020. The colonies were officially examined by the State Veterinary Administration of the Czech Republic. For our analyses, we targeted brood samples recognized as larvae before capping. Samples from two sites, namely, the villages Nevsova (denoted by N) and Tetcice (denoted by T), are included in this study. We aimed to analyze samples of honey bee broods infected and affected by the pathogenic bacterium P. larvae. The colonies from which we collected samples had typical clinical signs of AFB. For our analysis, we selected larvae just before capping. We decided to analyze the samples using high-throughput proteomics, and to select an array of samples, it was necessary to confirm whether the samples were infected by P. larvae. Importantly, the presence/absence of P. larvae was confirmed using PCR before the proteomic analysis in the same individual sample. The study was supported by project no. QK1710228 (NAZV) and RO0418 of the Ministry of Agriculture of the Czech Republic.
DOI: 10.6084/m9.figshare.19574926.v1
title: Original data.xlsx

description: <strong>Treatment of the saline-alkali soil with the composite soil conditioner and its effect on corn yield</strong>
DOI: 10.48370/ofd/1lqwst/npqc0m
title: stictoleptura excissipes.JPG

description: :unav
DOI: 10.48370/ofd/1lqwst
title: Stictoleptura excisipes (Ménétriés, 1832), C-687

description: Coleoptera collection
DOI: 10.5281/zenodo.6416173
title: Does the social distancing measures impact collaboration in software processes?

description: Context: Social distancing measures to reduce the impacts of the COVID-19 pandemic bring challenges for several organizations<br> and their Information Systems (IS). Problem: Social distancing were suddenly implemented, with no adequate planning. Furthermore, there is not a clear understanding of the impacts of social distancing measures on the software development teams’ work. Solution: This study aims to identify the presence and impacts of social distancing on collaboration between people, as well as<br> on activities and technologies used in software development, from the perspective of professionals who work in software development teams. IS Theory: The research was developed under the aegis of the Team Resilience Theory. Method: A field study was conducted based on structured interviews and qualitative analysis. Results: In general, it was observed no impact on the software processes activities, although their performance was affected. It was also observed that the impact on the collaboration dynamics in software development was perceived in different ways, by several team members. This study identified the most common tools used by organizations, as well as the benefits and challenges of collaboration in software development after social distancing measures. Contribution: The impacts of social distancing on collaboration in software development were identified, reinforcing the Team Resilience Theory and similar study conducted in the beginning of the COVID-19 pandemic. This study contributes to the Grand Research Challenge "Systemic and Socially Aware Perspective for Information Systems".
DOI: 10.6084/m9.figshare.15149070
title: Lack of congruence between fundamental and realised aridity niche in a lineage of water beetles

description: Occurrence data for eight species of water beetles (genus <i>Enochrus</i>, family Hydrophilidae) used for the analyses made by Pallarés et al. in the study entitled "<i><b>Lack of congruence between fundamental and realized aridity niche in a lineage of water beetle</b></i>s"<br>
DOI: 10.48370/ofd/6lhblr/xfaqv8
title: Lepturobosca virens.JPG

description: :unav
DOI: 10.48370/ofd/6lhblr
title: Zmorsznik zielony (Lepturobosca virens (Linnaeus, 1758)), C-688

description: Coleoptera collection
DOI: 10.48370/ofd/dhnhdv/zoovpi
title: FLMW_Cladonia_furcata_L-1140.tif

description: :unav
DOI: 10.48370/ofd/dhnhdv
title: Chroborek widlasty (Cladonia furcata (Huds.) Schrad.), L-1140

description: Fungarium Lichenum
DOI: 10.18154/rwth-2022-03248
title: Off-Highway Twins dataset to evaluate the creation, updating, and use of digital twins of off-highway vehicles and their environments for planning, execution, and documentation of work processes
title: Off-Highway-Twins-Datensatz zur Evaluation der Erstellung, Aktualisierung und Nutzung Digitaler Zwillinge von Off-Highway-Fahrzeugen und deren Umgebung für Planung, Ausführung und Dokumentation von Arbeitsprozessen

description: As part of the feasibility study, the question was investigated to what extent and with which methods sensor data collected from mobile machines can be suitably evaluated in order to synthesize further information from them, which is then made available in cloud databases for use in downstream processes. In the project, a wheel loader was equipped with appropriate sensor technology and measurement infrastructure and put into operation for data collection at a test site of the RWTH. The wheel loader was equipped with pressure and displacement sensors on the working hydraulics, with speed sensors on the wheels, and with acceleration sensors in the cabin. In addition, a camera, as well as two LiDAR sensors, were attached to the machine to capture the environment. The data set published here contains the processed measurement data of the various sensors for a total of 8 test runs in different environments and scenarios.
DOI: 10.12751/g-node.58bc8k
title: Robust effects of corticothalamic feedback and behavioral state on movie responses in mouse dLGN

description: Data and Python code for regenerating plots in Spacek et. al., 2022, published in eLife (https://doi.org/10.7554/eLife.70469). Use `main.py` to load data for all LGN optogenetic experiments as a function of stimulus type (movies, gratings), run state, and opto state. Data are loaded from pandas DataFrames, which are saved as Python pickles. Statistics are computed using the included R code.
description: IsSupplementTo: Spacek, M. A., Crombie, D., Bauer, Y., Born, G., Liu, X., Katzner, S., Busse, L. Robust effects of corticothalamic feedback and behavioral state on movie responses in mouse dLGN. eLife 11:e70469 (2022). (https://doi.org/10.7554/eLife.70469)
DOI: 10.48370/ofd/lcw1gl
title: Strangalia czereśniowa (Pedostrangalia revestita (Linnaeus, 1767)), C-689

description: Coleoptera collection
DOI: 10.15151/esrf-es-774436394
title: Inhouse research

description: The spontaneous self-assembly of catanionic surfactant mixtures in dilute solutions upon rapid mixing will be probed by time resolved SAXS.
DOI: 10.48370/ofd/u1htvt
title: Pedostrangalia verticenigra (Pic, 1892), C-690

description: Coleoptera collection
DOI: 10.6084/m9.figshare.14916360
title: Pallares et al. Plasticity of thermal performance curves in a narrow range endemic water beetle

description: Data supporting the article <i>Plasticity of thermal performance curves in a narrow range endemic water beetle. </i>Results from the experiments measuring locomotion performance and metabolic rate in the aquatic beetle <i>Enocrhus jesusarribasi </i>(fam. Hydrophilidae).
DOI: 10.6084/m9.figshare.14916360.v1
title: Pallares et al. Plasticity of thermal performance curves in a narrow range endemic water beetle

description: Data supporting the article <i>Plasticity of thermal performance curves in a narrow range endemic water beetle. </i>Results from the experiments measuring locomotion performance and metabolic rate in the aquatic beetle <i>Enocrhus jesusarribasi </i>(fam. Hydrophilidae).
DOI: 10.48370/ofd/edbugr
title: Pedostrangalia adaliae (Reitter, 1885), C-691

description: Coleoptera collection
DOI: 10.48370/ofd/htvbzj
title: Pedostrangalia verticalis (Germar, 1822), C-692

description: Coleoptera collection
DOI: 10.6084/m9.figshare.19575433.v1
title: UCSChosting_Apr2022

description: UCSC hosting
DOI: 10.6084/m9.figshare.19575433
title: UCSChosting_Apr2022

description: UCSC hosting
DOI: 10.5281/zenodo.5159210
title: Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes

description: Bacterial specialized metabolites are a proven source of antibiotics and cancer therapeutics, but whether we have sampled all the secondary metabolite chemical diversity of cultivated bacteria is not known. We analysed ~ 170,000 bacterial genomes and ~ 47,000 metagenome assembled genomes (MAGs) using a modified BiG-SLiCE and the new clust-o-matic algorithm. We found that only 3% of the natural products potentially encoded in bacterial genomes have been experimentally characterized. We show that the variation of secondary metabolite biosynthetic diversity drops significantly on a genus level, identifying it as an appropriate taxonomic rank for comparison. Equal comparison of genera based on Relative Evolutionary Distance revealed that <em>Streptomyces</em> bacteria encode the largest biosynthetic diversity by far, with <em>Amycolatopsis</em>, <em>Kutzneria</em> and <em>Micromonospora</em> also encoding substantial chemical diversity. Finally we find that several less-well-studied taxa such as Weeksellaceae (Bacteroidota), Myxococcaceae (Myxococcota), <em>Pleurocapsa</em> and Nostocaceae (Cyanobacteria) have potential to produce highly diverse secondary metabolites that warrant further investigation.
description: Final version
DOI: 10.48370/ofd/qmjugw
title: Pedostrangalia raggi (Sama, 1992), C-693

description: Coleoptera collection
DOI: 10.5255/ukda-sn-855625
title: Behavioural and Neural Indices of Perceptual Decision-making in Autistic Children During Visual Motion Tasks, 2018-2020

description: This collection contains the EEG and behavioural data relating to the article by Manning et al. published in the journal, 'Behavioural and neural indices of perceptual decision-making in autistic children during visual motion tasks'. Many studies report atypical responses to sensory information in autistic individuals, yet it is not clear which stages of processing are affected, with little consideration given to decision-making processes. We combined diffusion modelling with high-density EEG to identify which processing stages differ between 50 autistic and 50 typically developing children aged 6-14 years during two visual motion tasks. Our pre-registered hypotheses were that autistic children would show task-dependent differences in sensory evidence accumulation, alongside a more cautious decision-making style and longer non-decision time across tasks. We tested these hypotheses using hierarchical Bayesian diffusion models with a rigorous blind modelling approach, finding no conclusive evidence for our hypotheses. Using a data-driven method, we identified a response-locked centro-parietal component previously linked to the decision-making process. The build-up in this component did not consistently relate to evidence accumulation in autistic children. This suggests that the relationship between the EEG measure and diffusion-modelling is not straightforward in autistic children. Compared to a related study of children with dyslexia, motion processing differences appear less pronounced in autistic children. Exploratory analyses also suggest weak evidence that ADHD symptoms moderate perceptual decision-making in autistic children.
DOI: 10.5281/zenodo.6412372
title: Dataset for McClelland et al. 2022. Infrequent compost applications increased plant productivity and soil organic carbon in irrigated pasture but not degraded rangeland. Agriculture, Ecosystems, and Environment.

description: Raw data files accompanying the published article "Infrequent compost applications increased plant productivity and soil organic carbon in irrigated pasture but not degraded rangeland" in <em>Agriculture, Ecosystems, and Environment</em>. https://authors.elsevier.com/a/1etJPcA-Ik6yb Units for response variables in .csv files are as follows. Please reach out to scm229@cornell.edu with any questions about using the files or the data within. -- Aboveground biomass: total (Mg ha-1), carbon (Mg C ha-1), nitrogen (kg N ha-1) Bulk density: g cm-3 Respiration (Rs): micro mol m-2 s-1 Roots: Mg C ha-1 Soil C and N: organic and inorganic carbon (Mg C ha-1), nitrogen (Mg N ha-1)
DOI: 10.5281/zenodo.6412371
title: Dataset for McClelland et al. 2022. Infrequent compost applications increased plant productivity and soil organic carbon in irrigated pasture but not degraded rangeland. Agriculture, Ecosystems, and Environment.

description: Raw data files accompanying the published article "Infrequent compost applications increased plant productivity and soil organic carbon in irrigated pasture but not degraded rangeland" in <em>Agriculture, Ecosystems, and Environment</em>. https://authors.elsevier.com/a/1etJPcA-Ik6yb Units for response variables in .csv files are as follows. Please reach out to scm229@cornell.edu with any questions about using the files or the data within. -- Aboveground biomass: total (Mg ha-1), carbon (Mg C ha-1), nitrogen (kg N ha-1) Bulk density: g cm-3 Respiration (Rs): micro mol m-2 s-1 Roots: Mg C ha-1 Soil C and N: organic and inorganic carbon (Mg C ha-1), nitrogen (Mg N ha-1)
DOI: 10.48370/ofd/eugonu
title: Pedostrangalia kurda (Sama, 1996), C-694

description: Coleoptera collection
DOI: 10.48370/ofd/licz8x
title: Pedostrangalia emmipoda (Mulsant, 1863), C-695

description: Coleoptera collection
DOI: 10.18112/openneuro.ds004078.v1.0.0
title: A synchronous multimodal neuroimaging dataset to study brain language processing
DOI: 10.17870/bathspa.8869913
title: Catch Me If You Can Workstream - Consent Form

description: The Catch Me If You Can workstream is part of the larger funded D4D Project, investigating the ways disabled people ar connected/disconnected to/from their surrounding communities. <br>This work stream addresses the themes of play, technology and inclusion.<br>This item contains a consent form for the project.
DOI: 10.17870/bathspa.8869913.v1
title: Catch Me If You Can Workstream - Consent Form

description: The Catch Me If You Can workstream is part of the larger funded D4D Project, investigating the ways disabled people ar connected/disconnected to/from their surrounding communities. <br>This work stream addresses the themes of play, technology and inclusion.<br>This item contains a consent form for the project.
DOI: 10.6084/m9.figshare.17313188.v5
title: Dataset Longitudinal alterations of gait features in children with Duchenne muscular dystrophy

description: This dataset contains subject information, 3D gait analysis data (spatiotemporal, kinematic and kinetic parameters) of children with Duchenne muscular dystrophy and typically developing children. This dataset is used in the paper: Longitudinal alterations of gait features in Duchenne muscular dystrophy
DOI: 10.48370/ofd/jciy2v
title: Pedostrangalia femoralis (Motschulsky, 1860), C-696

description: Coleoptera collection
DOI: 10.34740/kaggle/dsv/3443019
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.19575463.v1
title: Single-pixel phase imaging via phase-modulated detection - Dataset

description: Data files for Figs. 5, 6, and 8
DOI: 10.6084/m9.figshare.19575463
title: Single-pixel phase imaging via phase-modulated detection - Dataset

description: Data files for Figs. 5, 6, and 8
DOI: 10.48370/ofd/rh1ewz
title: Stenopterus ater (Linnaeus, 1767), C-697

description: Coleoptera collection
DOI: 10.5281/zenodo.5659336
title: UCA-EHAR

description: UCA-EHAR is a dataset for human activity recognition using smart glasses. The data is collected from a gyroscope, an accelerometer and a barometer embedded onto smart glasses with 20 subjects performing 8 different activities. https://bitbucket.org/edge-team-leat/uca-ehar
description: Ethics Committee Approval n°2022-033, 8 April 2022, CER Université Côte d'Azur
description: {"references": ["UCA-EHAR: A Dataset for Human Activity Recognition with Embedded AI on Smart Glasses, Pierre-Emmanuel Novac, Alain Pegatoquet, Beno\u00eet Miramond and Christophe Caquineau, Applied Sciences 2022"]}
DOI: 10.5281/zenodo.5659335
title: UCA-EHAR

description: UCA-EHAR is a dataset for human activity recognition using smart glasses. The data is collected from a gyroscope, an accelerometer and a barometer embedded onto smart glasses with 20 subjects performing 8 different activities. https://bitbucket.org/edge-team-leat/uca-ehar
description: Ethics Committee Approval n°2022-033, 8 April 2022, CER Université Côte d'Azur
description: {"references": ["UCA-EHAR: A Dataset for Human Activity Recognition with Embedded AI on Smart Glasses, Pierre-Emmanuel Novac, Alain Pegatoquet, Beno\u00eet Miramond and Christophe Caquineau, Applied Sciences 2022"]}
DOI: 10.34740/kaggle/dsv/3443052
title: 2021 World Population (updated daily)
DOI: 10.48370/ofd/gc7e7c
title: Stenopterus ater (Linnaeus, 1767), C-698

description: Coleoptera collection
DOI: 10.48370/ofd/jughrs
title: Stenopterus kraatzi (Pic, 1892), C-699

description: Coleoptera collection