cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hsf7xc
title: Occurrence Download

description: A dataset containing 469 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vellozia epidendroides"
 ]
}

 The dataset includes 469 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038778-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vy4php
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurium favargeri"
 ]
}

 The dataset includes 223 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038777-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14272/akzaidyhekuxbu-uhfffaoysa-n.1
title: 4,7-dibromo-1,10-phenanthroline
title: InChI=1S/C12H6Br2N2/c13-9-3-5-15-11-7(9)1-2-8-10(14)4-6-16-12(8)11/h1-6H

description: This is a physical chemical entity[CHEBI_24431] associated with a molecule[CHEBI_25367].
 The molecule[CHEBI_25367] can be described by the following structural desciptors[cheminf_000085]:
 InChI descriptor[cheminf_000113]: InChI=1S/C12H6Br2N2/c13-9-3-5-15-11-7(9)1-2-8-10(14)4-6-16-12(8)11/h1-6H, and canonical SMILES descriptor[cheminf_000007]: Brc1ccnc2c1ccc1c2nccc1Br, and by the IUPAC name[cheminf_000107]: 4,7-dibromo-1,10-phenanthroline.
 
 The physical chemical entity[CHEBI_24431] has a component solvent[CHEBI_46787] which is described by the canonical SMILES descriptor[cheminf_000007]:
 
 The physical chemical entity[CHEBI_24431] has the following Sample ID as registered in the research data repository chemotion (www.chemotion-repository.net, https://doi.org/10.25504/FAIRsharing.iagXcR): CRS-56098

 The physical chemical entity[CHEBI_24431] can be described by the physical descriptors [CHEMINF_000025]:
 Melting point descriptor[CHEMINF_000256]: 
 Boiling point descriptor[CHEMINF_000257]: 
 Refractive index descriptor[CHEMINF_000253]:

 The physical chemical entity[CHEBI_24431] can be further described by the following assays[OBI:0000070][CHMO:0001133]:
 
 CHMO:0000595 | 13C nuclear magnetic resonance spectroscopy (13C NMR)
 
 CHMO:0000593 | 1H nuclear magnetic resonance spectroscopy (1H NMR)
 
 CHMO:0000601 | heteronuclear multiple bond coherence (HMBC)
 
 CHMO:0000596 | distortionless enhancement with polarization transfer (DEPT)
 
 CHMO:0000596 | distortionless enhancement with polarization transfer (DEPT)
 
 CHMO:0000599 | correlation spectroscopy (COSY)
 
 CHMO:0000604 | heteronuclear single quantum coherence (HSQC)
 
 The physical chemical entity[CHEBI_24431] was deposited to the Molecule Archive of the Karlsruhe Insitute of Technology (KIT) with the following Sample ID: 

 Used ontologies:
 CHEBI - Chemical Entities of Biological Interest
 CHEMINF - chemical information ontology (information entities about chemical entities)
 CHMO - Chemical Methods Ontology
 OBI - Ontology for Biomedical Investigations
DOI: 10.14272/akzaidyhekuxbu-uhfffaoysa-n/chmo0000601
title: heteronuclear multiple bond coherence (HMBC) (4,7-dibromo-1,10-phenanthroline)
title: InChI=1S/C12H6Br2N2/c13-9-3-5-15-11-7(9)1-2-8-10(14)4-6-16-12(8)11/h1-6H

description: dataset for heteronuclear multiple bond coherence (HMBC)
DOI: 10.15468/dl.xjqhbm
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parupeneus forsskali",
 "Country is Cyprus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 88 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038779-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14272/akzaidyhekuxbu-uhfffaoysa-n/chmo0000596
title: distortionless enhancement with polarization transfer (DEPT) (4,7-dibromo-1,10-phenanthroline)
title: InChI=1S/C12H6Br2N2/c13-9-3-5-15-11-7(9)1-2-8-10(14)4-6-16-12(8)11/h1-6H

description: dataset for distortionless enhancement with polarization transfer (DEPT)
DOI: 10.14272/akzaidyhekuxbu-uhfffaoysa-n/chmo0000593
title: 1H nuclear magnetic resonance spectroscopy (1H NMR) (4,7-dibromo-1,10-phenanthroline)
title: InChI=1S/C12H6Br2N2/c13-9-3-5-15-11-7(9)1-2-8-10(14)4-6-16-12(8)11/h1-6H

description: dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR)
DOI: 10.14272/akzaidyhekuxbu-uhfffaoysa-n/chmo0000604
title: heteronuclear single quantum coherence (HSQC) (4,7-dibromo-1,10-phenanthroline)
title: InChI=1S/C12H6Br2N2/c13-9-3-5-15-11-7(9)1-2-8-10(14)4-6-16-12(8)11/h1-6H

description: dataset for heteronuclear single quantum coherence (HSQC)
DOI: 10.14272/akzaidyhekuxbu-uhfffaoysa-n/chmo0000599
title: correlation spectroscopy (COSY) (4,7-dibromo-1,10-phenanthroline)
title: InChI=1S/C12H6Br2N2/c13-9-3-5-15-11-7(9)1-2-8-10(14)4-6-16-12(8)11/h1-6H

description: dataset for correlation spectroscopy (COSY)
DOI: 10.15468/dl.a328tr
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parupeneus forsskali",
 "Country is Lebanon",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038782-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14272/akzaidyhekuxbu-uhfffaoysa-n/chmo0000595
title: 13C nuclear magnetic resonance spectroscopy (13C NMR) (4,7-dibromo-1,10-phenanthroline)
title: InChI=1S/C12H6Br2N2/c13-9-3-5-15-11-7(9)1-2-8-10(14)4-6-16-12(8)11/h1-6H

description: dataset for 13C nuclear magnetic resonance spectroscopy (13C NMR)
DOI: 10.14272/akzaidyhekuxbu-uhfffaoysa-n/chmo0000596.1
title: distortionless enhancement with polarization transfer (DEPT) (4,7-dibromo-1,10-phenanthroline)
title: InChI=1S/C12H6Br2N2/c13-9-3-5-15-11-7(9)1-2-8-10(14)4-6-16-12(8)11/h1-6H

description: dataset for distortionless enhancement with polarization transfer (DEPT)
DOI: 10.15468/dl.cbapwf
title: Occurrence Download

description: A dataset containing 1148 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glaucus atlanticus"
 ]
}

 The dataset includes 1148 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038781-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4xhxh
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parupeneus forsskali",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 190 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038780-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y66ent
title: Occurrence Download

description: A dataset containing 2513384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-91 38,-90 38,-90 39,-91 39,-91 38))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Passeriformes",
 "Year 2002-2024"
 ]
}

 The dataset includes 2513384 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038738-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14272/pgjlognvzgrmgx-uhfffaoysa-l.1
title: iron(2+);trifluoromethanesulfonate
title: InChI=1S/2CHF3O3S.Fe/c2*2-1(3,4)8(5,6)7;/h2*(H,5,6,7);/q;;+2/p-2

description: This is a physical chemical entity[CHEBI_24431] associated with a molecule[CHEBI_25367].
 The molecule[CHEBI_25367] can be described by the following structural desciptors[cheminf_000085]:
 InChI descriptor[cheminf_000113]: InChI=1S/2CHF3O3S.Fe/c2*2-1(3,4)8(5,6)7;/h2*(H,5,6,7);/q;;+2/p-2, and canonical SMILES descriptor[cheminf_000007]: FC(S(=O)(=O)[O-])(F)F.FC(S(=O)(=O)[O-])(F)F.[Fe+2], and by the IUPAC name[cheminf_000107]: iron(2+);trifluoromethanesulfonate.
 
 The physical chemical entity[CHEBI_24431] has a component solvent[CHEBI_46787] which is described by the canonical SMILES descriptor[cheminf_000007]:
 
 The physical chemical entity[CHEBI_24431] has the following Sample ID as registered in the research data repository chemotion (www.chemotion-repository.net, https://doi.org/10.25504/FAIRsharing.iagXcR): CRS-56090

 The physical chemical entity[CHEBI_24431] can be described by the physical descriptors [CHEMINF_000025]:
 Melting point descriptor[CHEMINF_000256]: 
 Boiling point descriptor[CHEMINF_000257]: 
 Refractive index descriptor[CHEMINF_000253]:

 The physical chemical entity[CHEBI_24431] can be further described by the following assays[OBI:0000070][CHMO:0001133]:
 
 CHMO:0000593 | 1H nuclear magnetic resonance spectroscopy (1H NMR)
 
 CHMO:0000595 | 13C nuclear magnetic resonance spectroscopy (13C NMR)
 
 CHMO:0000597 | 19F nuclear magnetic resonance spectroscopy (19F NMR)
 
 The physical chemical entity[CHEBI_24431] was deposited to the Molecule Archive of the Karlsruhe Insitute of Technology (KIT) with the following Sample ID: 

 Used ontologies:
 CHEBI - Chemical Entities of Biological Interest
 CHEMINF - chemical information ontology (information entities about chemical entities)
 CHMO - Chemical Methods Ontology
 OBI - Ontology for Biomedical Investigations
DOI: 10.14272/pgjlognvzgrmgx-uhfffaoysa-l/chmo0000597
title: 19F nuclear magnetic resonance spectroscopy (19F NMR) (iron(2+);trifluoromethanesulfonate)
title: InChI=1S/2CHF3O3S.Fe/c2*2-1(3,4)8(5,6)7;/h2*(H,5,6,7);/q;;+2/p-2

description: dataset for 19F nuclear magnetic resonance spectroscopy (19F NMR)
DOI: 10.14272/pgjlognvzgrmgx-uhfffaoysa-l/chmo0000593
title: 1H nuclear magnetic resonance spectroscopy (1H NMR) (iron(2+);trifluoromethanesulfonate)
title: InChI=1S/2CHF3O3S.Fe/c2*2-1(3,4)8(5,6)7;/h2*(H,5,6,7);/q;;+2/p-2

description: dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR)
DOI: 10.14272/pgjlognvzgrmgx-uhfffaoysa-l/chmo0000595
title: 13C nuclear magnetic resonance spectroscopy (13C NMR) (iron(2+);trifluoromethanesulfonate)
title: InChI=1S/2CHF3O3S.Fe/c2*2-1(3,4)8(5,6)7;/h2*(H,5,6,7);/q;;+2/p-2

description: dataset for 13C nuclear magnetic resonance spectroscopy (13C NMR)
DOI: 10.15468/dl.qf8c9j
title: Occurrence Download

description: A dataset containing 50447 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cenchrus ciliaris"
 ]
}

 The dataset includes 50447 records from 467 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038683-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.49dpf8
title: Occurrence Download

description: A dataset containing 1087 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium atratum"
 ]
}

 The dataset includes 1087 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038783-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfkpfa
title: Occurrence Download

description: A dataset containing 3932 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimelea drupacea"
 ]
}

 The dataset includes 3932 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038784-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xeefmh
title: Occurrence Download

description: A dataset containing 20930 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea jacea",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20930 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038788-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zenk7j
title: Occurrence Download

description: A dataset containing 285 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vellozia abietina"
 ]
}

 The dataset includes 285 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038786-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3zhgx
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea jacea",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038787-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dppc9a
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea jacea",
 "Country is Iceland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038789-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rq3ar7
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Asia",
 "Country is Malaysia",
 "TaxonKey is Indotyphlops braminus"
 ]
}

 The dataset includes 50 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038790-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrm4hw
title: Occurrence Download

description: A dataset containing 561 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Veratrum formosanum"
 ]
}

 The dataset includes 561 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038792-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mnf7u
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parupeneus forsskali",
 "Country is Syrian Arab Republic",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038794-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.arsatp
title: Occurrence Download

description: A dataset containing 352918 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pilosella officinarum"
 ]
}

 The dataset includes 352918 records from 1422 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038696-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25736814
title: Analysis 3 files

description: Datasets for analysis 3
DOI: 10.6084/m9.figshare.25736814.v1
title: Analysis 3 files

description: Datasets for analysis 3
DOI: 10.15468/dl.hr6kj4
title: Occurrence Download

description: A dataset containing 625693 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scarabaeidae"
 ]
}

 The dataset includes 625693 records from 242 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017596-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zcrdu4
title: Occurrence Download

description: A dataset containing 993555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is Noctuidae"
 ]
}

 The dataset includes 993555 records from 184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017600-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25736811
title: Analysis 2 code

description: R code for analysis 2
DOI: 10.6084/m9.figshare.25736811.v1
title: Analysis 2 code

description: R code for analysis 2
DOI: 10.6084/m9.figshare.25736805
title: Analysis 2 files

description: Datasets for analysis 2
DOI: 10.6084/m9.figshare.25736805.v1
title: Analysis 2 files

description: Datasets for analysis 2
DOI: 10.5281/zenodo.12822423
title: Reporter CRISPR screens decipher cis- and trans-regulatory principles at the Xist locus [FACS + BAMs + tables]

description: FACS data related to Figures 1 and 4 in Schwämmle et al. 2025. 

Also include BAM files of published data and other files needed to replicate analyses included in https://github.com/EddaSchulz/TFiScreen_Paper.
DOI: 10.5281/zenodo.12822424
title: Reporter CRISPR screens decipher cis- and trans-regulatory principles at the Xist locus [FACS + BAMs + tables]

description: FACS data related to Figures 1 and 4 in Schwämmle et al. 2025. 

Also include BAM files of published data and other files needed to replicate analyses included in https://github.com/EddaSchulz/TFiScreen_Paper.
DOI: 10.6084/m9.figshare.25736802
title: Analysis 1 code

description: Code for Analysis 1
DOI: 10.6084/m9.figshare.25736802.v1
title: Analysis 1 code

description: Code for Analysis 1
DOI: 10.15468/dl.9tsxva
title: Occurrence Download

description: A dataset containing 357 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Compsacris Bolívar, 1890, Compsacris pulcher Bolívar, 1890)"
 ]
}

 The dataset includes 357 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000587-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18112/openneuro.ds006179.v1.0.1
title: TODO: name of the dataset
DOI: 10.25345/c59w09b6c
title: MassIVE MSV000098041 - Capsicum chinense roots (Iron deficiency in hydroponics)
title: Root extracts from Capsicum chinense (cv. Habanero Orange), 36-39 d old. Last 12 d in pH 5.5 half Hoagland with either 0 (0Fe) or 20 microM Fe(III)-EDTA (Control). 7 replicates per treatment, 1 Qc per treatment (a pool of the 7 samples of each treatment) and 1 Qc all samples (a pool of all samples).
DOI: 10.5281/zenodo.15425395
title: ToxHabits-NER: A Gold-Standard annotated Dataset for Named Entity Recognition in Toxic Habits context.

description: ToxHabits-NER stands for Toxic Habits Named Entity Recognition. It is a gold-standard annotated dataset focused on the detection and classification of toxic habit mentions — such as tobacco use, alcohol consumption, and illicit drug use — within clinical texts written in Spanish.

This repository includes the corpus' train and test sets in multiple formats. The annotations cover mentions of toxic habits, associated behaviors, and contextual cues relevant for clinical and epidemiological studies. For more information, please check the attached README file.

ToxHabits-NER was developed by the Barcelona Supercomputing Center's NLP for Biomedical Information Analysis team. It is intended as a resource to advance research on toxic habit extraction and normalization tasks from medical documents.

For more information on the corpus, annotation scheme, and usage instructions, please visit: [link to your project page if you have one, or Zenodo landing page].

Please cite if you use this resource:



Salvador Lima-López, Wesam Alnabki, Gabriel Vayá-Abad, and Martin Krallinger.ToxHabits-NER: A Gold-Standard Annotated Dataset for Named Entity Recognition in Toxic Habits Context.Zenodo. 2025.DOI: 10.5281/zenodo.15304758.


@misc{toxhabitsner,    title={ToxHabits-NER: A Gold-Standard Annotated Dataset for Named Entity Recognition in Toxic Habits Context},    author={Lima-López, Salvador and Alnabki, Wesam and Vayá-Abad, Gabriel and Krallinger, Martin},    year={2025},    publisher={Zenodo},    doi={YOUR_DOI_HERE},    url={https://doi.org/10.5281/zenodo.15304758}

Related Links:





Annotation Guidelines (Spanish): -




Annotation Guidelines (English): -


 


License

This work is licensed under a Creative Commons Attribution 4.0 International License.

Contact

If you have any questions or suggestions, please contact us at:

- Salvador Lima-López (<salvador [dot] limalopez [at] gmail [dot] com>)- Martin Krallinger (<krallinger [dot] martin [at] gmail [dot] com>)
DOI: 10.5281/zenodo.15425460
title: ToxHabits-NER: A Gold-Standard annotated Dataset for Named Entity Recognition in Toxic Habits context.

description: ToxHabits-NER stands for Toxic Habits Named Entity Recognition. It is a gold-standard annotated dataset focused on the detection and classification of toxic habit mentions — such as tobacco use, alcohol consumption, and illicit drug use — within clinical texts written in Spanish.

This repository includes the corpus' train and test sets in multiple formats. The annotations cover mentions of toxic habits, associated behaviors, and contextual cues relevant for clinical and epidemiological studies. For more information, please check the attached README file.

ToxHabits-NER was developed by the Barcelona Supercomputing Center's NLP for Biomedical Information Analysis team. It is intended as a resource to advance research on toxic habit extraction and normalization tasks from medical documents.

This dataset is part of the ToxHabits Shared Task of BioCreative IX. 

For more information on the corpus, annotation scheme, and usage instructions, please visit: [link to your project page if you have one, or Zenodo landing page].

Please cite if you use this resource:



Salvador Lima-López, Wesam Alnabki, Gabriel Vayá-Abad, and Martin Krallinger.ToxHabits-NER: A Gold-Standard Annotated Dataset for Named Entity Recognition in Toxic Habits Context.Zenodo. 2025.DOI: 10.5281/zenodo.15304758.


@misc{toxhabitsner,    title={ToxHabits-NER: A Gold-Standard Annotated Dataset for Named Entity Recognition in Toxic Habits Context},    author={Lima-López, Salvador and Alnabki, Wesam and Vayá-Abad, Gabriel and Krallinger, Martin},    year={2025},    publisher={Zenodo},    doi={YOUR_DOI_HERE},    url={https://doi.org/10.5281/zenodo.15304758}

Related Links:





Annotation Guidelines (Spanish): -




Annotation Guidelines (English): -



License

This work is licensed under a Creative Commons Attribution 4.0 International License.

Contact

If you have any questions or suggestions, please contact us at:

- Salvador Lima-López (<salvador [dot] limalopez [at] gmail [dot] com>)- Martin Krallinger (<krallinger [dot] martin [at] gmail [dot] com>)