cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/4vktdpckhv.1
title: 1750 years of hydrological change in southern Australia: a bivalve oxygen isotope record from the Coorong Lagoon

description: Oxygen and carbon isotope ratios from A. helmsi samples from each centimetre of sediment from core C18 from The Coorong South Lagoon. Each sample is comprised of five shells of A. helmsi. Also shown is the age in years BP and years CE for each sample as determined by radiocarbon dating and age modelling. The oxygen isotope values are interpreted to reflect the balance of evaporation and inflow in this coastal lagoon.
DOI: 10.17632/hpyjdp33fx.2
title: hCPEB3_NMR_Spectra

description: NMR Spectra of human CPEB3's intrinsically disordered domain (residues 1-426 of isoform 2) obtained at pH 4.0 in 1 mM acetic acid (d4) and 25ºC.  The spectra were obtained on a Bruker 800 MHz (1H) Avance spectrometer equipped with a 3 channel cyroprobe and Z-gradients.  The disordered domain was studied as eight segments which are 100 residues long and overlap, i.e. segment 1 is residues 1-100, segment 2 is 51-150, segment 3 is 101 to 200, etc. 
Data is presented for 7 segments (1, 3, 4, 5, 6, 7 & 8);  segment 2 was insoluble.  For each segment, the spectral data for the 2D HSQC and 2D HCO; and/or hncacoNcaNCO, HNCO or hncaCOncaNCO are provided.
DOI: 10.17632/k4vkt3y5wf.1
title: Data for "The gradual minimum covering location problem"

description: This is the data for the paper "The gradual minimum covering location problem", available at:

https://www.tandfonline.com/doi/full/10.1080/01605682.2022.2056533

There are 180 .csv fies in the data, containing 90 "nodes" files, denoted by "n_x_nodes", and 90 "population" files, denoted by "n_x_population", where n shown the number of nodes (n = 100, 200, 300, 400, 500, 1000, 2000, 5000, 10000) and x represents the instance ID (x = 1, ..., 10). The same instance file can be used for the two type of problems where p (the number of facilities) is 5 or 10. 
The "nodes" files represents the coordiante of the nodes, i.e., the 100-1-nodes contains 100 coordinates, each in one column, where the value in the first (second) row represents the x- (y-) coordinate of the node in a 200 by 200 grid. The "populaiton" files, contains the populaiton c of the respective nodes, that are numbers between 1 to 100.
DOI: 10.17632/c3vwvwb5d9.1
title: Changing trends in the disease burden of non-melanoma skin cancer globally from 1990 to 2019 and its predicted level in 25 years: An time series study

description: Supplementary information for this manuscript.
DOI: 10.17632/m4s8vkd8c5.3
title: Data from uniaxial compressive testing of laboratory-made granular ice 

description: Uniaxial compressive tests of laboratory-made granular ice were conducted in a cold room in the ductile and brittle strain rate range at -10.83°C ±0.74°C. Ice specimens with a length to diameter ratio of 2.5 showing brittle behavior failed by axial splitting. With the Instron Labtronic 8800, the operator controlled the tests at a frequency of 4,000 Hz. The data acquisition rate was 25,000 Hz, and for faster experiments, 100,000 Hz. The operator controlled on a random basis the hydraulic cylinder by either the cylinder displacement or the specimen displacement to investigate the influence of the testing stiffness, among other testing properties, on the compressive strength of ice. The aim of the investigations was also to show the influence of high strain rates (brittle behavior) on the compressive strength of ice. Increasing as well as constant and decreasing compression strength trends with increasing strain rates could be shown in the past. The data presented here show a lower compressive strength at strain rates higher than 4*10-3 s-1. The data consist of the time history of the specimen and cylinder displacement measurement (in mm), and the force measurement (in kN). The data is available as a separate .xlsx file for each test performed. In total, 123 tests were performed. The file labeling consists of the testing date, the test number within the test series, the set test velocity (in mm/s) and the type of cylinder control. For the cylinder displacement controlled test, the label ends with ‘CDC’ and for the specimen displacement controlled tests, the label ends with ‘SDC’. However, if the test was performed with a 10 mm gap, the label ends with a ‘g’. The abbreviations are separated with an underscore.
The data provided here can be used to validate ice-material models or for ice-testing databases for machine learning purposes.
DOI: 10.17632/9kr3rf6gs2.1
title: An eco-innovative proposal to upcycle gillnets

description: Fishing gear life cycle begins in industries that manufacture these products from synthetic polymers persistent in the environment. The world trade distributes these materials around the planet and are introduced into the sea by the seafood supply chain that is plastic-dependent to catch fish. Abandoned, lost or otherwise discarded fishing gear (ALDFG) cause environmental and economic impacts, such as ghost fishing, habitat loss and biodiversity, in addition are sources of microplastics. Nowadays items related to fishing are among the top ten items responsible for marine litter. This study developed low-impact reverse engineering of gillnets removed in Marine Protected Areas (MPAs) of São Paulo State, Brazil.  First sale price of gillnet waste was estimated and the traceability of high added environmental value polyamide-6 (PA6, nylon) prototypes (upcycle) through the green technology approach and convolutional neural network tools.
Datasets of Bottom set gill net anchored”, classified as “GNS 07.1”. 
Where total weight (TW) in kg, total length (TL) (m), netting (webbing) height (HPA) (m), netting total length (TLPA) (m), mesh size (MESH)  (mm), monofilament diameter (DIAM) (mm),  material exhaustion percentage (EX) and the hanging ratio (E), where the hanging ratio was  determined by the quotient between the headline length and the netting length. Additionally, residue weight, such as sand and debris (RES).  
Raw = 280 instances; Measured = 134 instances and Reverse = 36 instances

Residual silte particle datasets embedded in PA6 upcycle from illegal and ghost gillnet
From 15 recycled PA6 badge holder prototypes were captured 45 random images through digital microscope and processing in ImageJ software. 
Particle_Summary_Anova is a ImageJ analysis summary of particle features for each image.
Particles_Bin has 3041 instances of silt particles features,  with 2626 instances (TRUE) and 415 instances (FALSE)
DOI: 10.17632/fs839x372j.3
title: Supplemental Figure I

description: Naranjo’s algorithm
DOI: 10.17632/5z5xxprrxt.2
title: Groundwater level in Nebraska Sand Hills using LIDAR-derived lake water level (contours and raster). 

description: The data represents the groundwater level in the Nebraska Sand Hills. The groundwater level were derived using the lake water level using LIDAR observations. The groundwater level are in NAVD88 vertical datum and NAD83 Zone 14 horizontal datum. The Universal Kriging (UK) raster and contour represents the regional groundwater level while Kriging with an external drift (KED) represents local variation in water level. The contours are cleaned for artifacts.
DOI: 10.17632/mhnksdw8jn.1
title: Protein-level mutant p53 reporters identify druggable low-frequency precancerous clones in noncancerous tissues

description: Protein-level mutant p53 reporters identify druggable low-frequency precancerous clones in noncancerous tissues
DOI: 10.17632/d5pk9h72zh.1
title: Clinician language, its reporting, and its effect on patient outcomes in myofascial trigger point dry needling trials – A systematic review

description: Search Strategy and detailed summary table of individual studies included in the review
DOI: 10.17632/3p94t45zst.1
title: Supplementary Table. Combined biotin, folic acid, and vitamin B12 supplementation given during the transition period to dairy cows: Part II. The impact on energy balance and fatty acid composition of colostrum and milk 

description: Yields of milk fatty acids (g/d) and glycerol within the first 21 d of lactation of cows receiving supplements of biotin, folic acid, and vitamin B12
DOI: 10.17632/mj6m7cnsst.1
title: Bedload Monitoring With Hydrophones: A Field Validation

description: These data support the paper manuscript entitled  "Bedload Monitoring With Hydrophones: A Field Validation" submitted to EGU  Journal of Earth Surface Dynamics. 
The folder  "Acoustic Samples" contains acoustic measurements samples labeled with the name of each river and the date of measurement. 
The Excel table "Acoustic_Power_Drifts.xlsx" contains, for each river, the acoustic power calculated for each drift and the corresponding position. 
The folder "Artificial River Modeling" contains the data for the set of 1000 artificial rivers used in the acoustic modeling and the corresponding results. These results are also presented in section 4.4 in the manuscript.
The supporting information document provides mainly the bedload flux, and acoustic power measurements for each river,  and summary of the data from Geay et al. (2020).
DOI: 10.17632/c8stbpx5mz.1
title: Differential proteomic analysis of laser-microdissected penetration glands of avian schistosome cercariae with a focus on proteins involved in host invasion

description: The data are supplementary to the article "Differential proteomic analysis of laser-microdissected penetration glands of avian schistosome cercariae with a focus on proteins involved in host invasion" published in the International Journal for Parasitology 2022, vol. 52, issue 6, pp 343-358, https://doi.org/10.1016/j.ijpara.2021.12.003. The tables include mainly peptide identifications and annotations based on LC-MS/MS analyses of proteins contained in two separately isolated types of penetration glands of infectious larvae of the avian parasite Trichobilharzia szidati (Trematoda: Schistosomatidae) causing cercarial dermatitis in humans. Results of optimization experiments are also presented. Schistosome invasive stages, cercariae, leave their intermediate snail hosts, penetrate the skin of definitive hosts, and transform to schistosomula migrating to final location. During invasion, cercariae employ histolytic and other bioactive products of specialized holocrine secretory cells – postacetabular and circumacetabular penetration glands, the content of which is unsufficiently characterized. We present here the largest dataset known so far concerning the representation and localization of cercarial penetration gland proteins. We optimized the methods of sample processing with cercarial bodies (heads) first. Alizarin-pre-stained, chemically non-fixed samples provided optimal results of MS analyses, and enabled distinguishing PA and CA glands for laser microdissection. Peptidases of 5 catalytic types accounted for ca. 8 % and 6 % of reliably identified proteins in postacetabular and circumacetabular glands, respectively. Invadolysin, nardilysin, cathepsins B2 and L3, and an elastase 2b ortholog were the major gland endopeptidases. Two cystatins and a serpin were highly abundant peptidase inhibitors in the glands. While postacetabular glands generally had a rich enzymatic equipment, circumacetabular glands were conspicuously abundant in venom allergen-like proteins (PF00188 protein family members).
DOI: 10.17632/v2z427ddn5.2
title: Data for: BIM-assisted Workflow Enhancement for Architecture Preliminary Design

description: The database contains the process information and design outcomes involved in traditional and BIM-assisted workflows.
Process model.pdf file contains the design logic, stakeholders, and data exchange involved in both workflows.
Questionnaire.pdf file includes the questionnaire information for both workflows.
Questionnaire feedback.pdf file displays the questionnaire feedback data.
Demo_Lumion rendering video.mp4 file shows the exterior rendering of the building case.
Demo_Synchro Pro animation video.mp4 file presents the construction details animation of the building case.
DOI: 10.17632/g3nfrjcb8n.1
title: LINF_260015400

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.14445363.v1
title: Chemotaxis and Swarming in neutrophils

description: The human leukemia cell line (HL-60) is an alternative to primary neutrophils in research studies. However, because HL-60 cells proliferate in an incompletely differentiated state, they must undergo differentiation before they acquire the functional properties of neutrophils. Here we provide evidence of swarming and chemotaxis in differentiated HL-60 neutrophil-like cells (dHL-60) using precise microfluidic assays. We found that dimethyl sulfoxide differentiated HL-60 cells (DdHL-60) have a larger size, increased length, and lower ability to squeeze through narrow channels compared to primary neutrophils. They migrate through tapered microfluidic channels slower than primary neutrophils, but faster than HL-60s differentiated by other protocols, e.g., using all-trans retinoic acid. We found that dHL-60 can swarm toward zymosan particle clusters, though they display disorganized migratory patterns and produce swarms of smaller size compared to primary neutrophils.
DOI: 10.17632/vncn69nwws.1
title: LINF_260015200

description: dynein heavy chain
Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.6478083
title: Data and Code for: Oh, the places you will grow: intraspecific latitudinal clines in butterfly size suggest a phylogenetic signal

description: This publication contains the R-Scripts and other supplementary files necessary to reproduce the analyses and figures of Merwin A, Hilliard J, Larsen A, Lasken A, Johnson I (2022) Oh, the places you will grow: intraspecific latitudinal clines in butterfly size suggest a phylogenetic signal. Ecology and Evolution All files are compressed into a single ZIP folder. All directories contain README files that explain their contents.
DOI: 10.5281/zenodo.6478082
title: Data and Code for: Oh, the places you will grow: intraspecific latitudinal clines in butterfly size suggest a phylogenetic signal

description: This publication contains the R-Scripts and other supplementary files necessary to reproduce the analyses and figures of Merwin A, Hilliard J, Larsen A, Lasken A, Johnson I (2022) Oh, the places you will grow: intraspecific latitudinal clines in butterfly size suggest a phylogenetic signal. Ecology and Evolution All files are compressed into a single ZIP folder. All directories contain README files that explain their contents.
DOI: 10.17632/tnkrjdbcz8.1
title: BORAY: A ray tracing code for various magnetized plasma configurations

description: Ray tracing codes are useful to study the electromagnetic wave propagation and absorption in the geometrical optics approximation. In magnetized fusion plasma community, most ray tracing codes assume the plasma density and temperature be functions of the magnetic flux and study waves only inside the last closed flux surface, which are sufficient for the present day tokamak. However, they are difficult to be used for configurations with open magnetic field line plasmas, such as mirror machine and field-reversed-configuration (FRC). We develop a ray tracing code in cylindrical coordinates (r, ϕ, z) to support arbitrary axisymmetric configurations with both closed and open field lines plasmas. For wave propagation, the cold plasma dispersion relation is usually sufficient, and we require the magnetic field B(r, z) and species densities n_s0(r, z)  profiles as input. For wave absorption, we require a further temperature T_s0(r, z) profile to solve a hot kinetic plasma dispersion relation. In difference to other ray tracing codes which calculate the imaginary part of wave vector k_{⊥, i} for wave absorption, we calculate the imaginary part of wave frequency w_i, which is shown to be equivalent with the former technique under weak damping approximation. The code can use either numerical or analytical equilibrium. Examples and benchmarks with electron cyclotron wave, lower hybrid wave and ion cyclotron wave for tokamak, spherical tokamak (ST), FRC and mirror machine are shown.
DOI: 10.17632/292ksgjxd8.1
title: LINF_260015000

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/n65skpcmsh.1
title: LINF_260014900

description: glucosidase II beta subunit
Leishmania infantum (strain JPCM5)
DOI: 10.17632/n76jpj3fnz.1
title: P-TRANS: A Monte Carlo ray-tracing software to simulate phonon transport in arbitrary nanostructures

description: P-TRANS is a software to simulate phonon transport in arbitrary nanostructures based on the Boltzmann transport theory. The core part of the software is a Monte Carlo ray-tracing solver that uses the stochastic method to sample phonon transport in various nanostructures. The solver is written in FORTRAN with well-organized modules and utilizing the OpenMP and MPI parallelization to achieve high performance. The software can handle a typical calculation of nanostructures with a feature size of ∼1000 nm on a normal PC within seconds, which is useful when exploring the wide variety of structures, for instance for structural optimization or high-throughput screening in material informatics. The software takes the bulk phonon properties obtained from the first-principles anharmonic lattice dynamics calculations as inputs. The database of bulk phonon properties is available on the software webpage, which currently contains more than 60 materials and will increase in the future. We also provide a graphical user interface to design the nanostructures and to run the simulation for non-expert users. In this paper, we introduce the theoretical background, the technical details and implementation, and the applications of the software.
DOI: 10.17632/49fy3dpsr2.1
title: Travel and social networks; Ethical challenges

description: The purpose of this paper is to identify the most effective ethical challenges that social networks offer in the tourist industry.
DOI: 10.17632/j595b5w736.1
title: Teachers' attitude towards inclusive education from 2000 to 2020: an extended meta-analysis

description: Data and references for the meta analysis
DOI: 10.6084/m9.figshare.19617234
title: Salmonella enterica BEAST2 xml files

description: BEAST2 XML files used to calculate <em>Salmonella enterica</em> evolutionary rates for the study described in "Using evolutionary analyses to refine whole-genome sequence match criteria."
DOI: 10.17632/4njyjn4s86.1
title: Supplementary infos TH

description: Supplementary files for the paper 'Aging is associated with a degeneration of noradrenergic-, but not dopaminergic-neurons, in the short-lived killifish Nothobranchius furzeri.'  The two folders contain the R scripts and data utilized for the analysis, and a collection of the tiles utilized for the 3D reconstruction of locus coeruleus and posterior tuberculum shown in the article. In each tiff folder is included the relative 3D imaris file, including of the cell count overlay.
DOI: 10.17632/5jfh764z7f.1
title: Optimized cartesian coordinates of clusters of solvated copper ion in water, ammonia and methanol

description: These data resume optimized Cartesian coordinates of the various isomers of Cu2+(H2O)n, Cu2+(NH3)n and Cu2+(CH3OH)n. The zero-point corrected electronic energies of these isomers are also reported.
DOI: 10.17632/9hns9ss6ny.4
title: Figures_Monoclonal antibodies binding data for SARS-CoV-2 proteins

description: Data for figure 2.
Data were processed.  Data points and the fitting points were included in the raw data in excel format.  The data were fit to standard four-parameter logistic equations using GraphPad Prism (GraphPad Software, La Jolla, CA).

Data for figure 3.
Processed data for Figure 3. Data are in excel format which includes data points and fitting points for different antibodies used.  The binding responses were analyzed by subtracting data from reference, and data were globally fitted with a 1:1 binding model using ForteBio’s Data Analysis software 9.0

Figure 1: Illustrate the schematic workflow of antibodies generational and characterizations.
Figure 2: Describe the IgG binding of the synthetic antibodies.
Figure 3: Binding kinetics of the antibodies. To estimate further the binding kinetics and specificity of IgG formatted IgG.
Figure 4 Western blot (WB) analysis of Nsp1, Nsp8 and Nsp12 antibodies with respective purified proteins.
DOI: 10.17632/ggfm4yzkgz.1
title: Çumra

description: Çumra soil data base
DOI: 10.17632/kkh7wmphmb.1
title: Data article - Extreme weather and crop diversification: adaptation to climate change in Brazil

description: Panel data 1996, 2006, 2017 - Fixed effects
Panel data future scenarios
Code Stata
DOI: 10.17632/d2dmnjn7xf.1
title: Code and Data to assess Air Quality over southeastern Brazil Part I

description: The data (T2m, RH2m, WD10m, WS10m, Nox, O3, CO and PM2.5) simulated obtained by the WRF-Chem model were extracted at surface level in 60 coordinate points, corresponding to the CETESB air quality stations, distributed in the state from São Paulo. These CETESB data also provide both meteorological and chemical parameters similar to the WRF-Chem model. The comparison between the simulated data with the observational data was carried out for the validation of the WRF-chem model over the southeast of Brazil. On the other hand, two additional stations were considered in this validation, the IAG-USP and Botucatu stations. Considering this last station, some particular events were found where the concentration of O3 over the MASP impacted on the City of Botucatu. That event is displayed using the "plot_heigh_ozone.py" script, located in the "event" paste.
DOI: 10.17632/rz8t786st8.1
title: Simulation data of optimal control problems - Comparison of free-floating base and full-body dynamics for Trampoline Miller acrobatic

description: These folders contain the results of optimal control problems that predicts the motion of a trampoline Miller. It investigates the effect of equations of motion and optimal control problems formulations (explicit and implicit) to solve trampoline Miller optimal control problems with direct multiple shooting using Bioptim software. The performance of each OCP formulation and equation of motion is assessed through computational time, dynamic consistency, and cost function values.

Simulation data refers to the 100 simulations per optimal control problem (OCP) investigated with a different initial guess: Explicit formulation of the OCP with full-body dynamics,  Explicit formulation of the OCP with free-floating base dynamics, Implicit formulation of the OCP with full-body dynamics, Implicit formulation of the OCP with free-floating base dynamics, Implicit formulation of the OCP with full-body dynamics and generalized accelerations as states and jerks as controls, and Implicit formulation of the OCP with free-floating base dynamics and generalized accelerations as states and jerks as controls

"Effect of mesh points" refers to the 30 simulations per OCP investigated with a different initial guess while increasing the density of mesh points from 150 to 840. The implicit formulations were only considered:  Implicit formulation of the OCP with full-body dynamics, Implicit formulation of the OCP with free-floating base dynamics, Implicit formulation of the OCP with full-body dynamics and generalized accelerations as states and jerks as controls, and Implicit formulation of the OCP with free-floating base dynamics and generalized accelerations as states and jerks as controls.

Zip folders contain the raw data from each simulation in two formats, namely .pkl (python) and .bo (bioptim) and DataFrame Pickle files contain a pandas Dataframe which summarizes all the parameters and results of each simulation.

The code to process the data is available on the following repository:  https://github.com/Ipuch/OnDynamicsForSommersaults/