cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9250784
title: Data

description: Data includes full and sparse reconstruction of mouse and (circular and vessel-like) phantoms imaged with optoacoustic setup.
DOI: 10.6084/m9.figshare.9250766
title: March_0075m_annot_count_table.txt Diel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250769
title: June_0250m_annot_count_table.txtDiel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250763
title: June_0025m_annot_count_table.txt

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250766.v1
title: March_0075m_annot_count_table.txt Diel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250757
title: June_0125m_annot_count_table.txtDiel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250760
title: March_0025m_annot_count_table.txtDiel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250763.v1
title: June_0025m_annot_count_table.txt

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250769.v1
title: June_0250m_annot_count_table.txtDiel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250751
title: June_0075m_annot_count_table.txtDiel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250754
title: March_0250m_annot_count_table.txtDiel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250757.v1
title: June_0125m_annot_count_table.txtDiel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250751.v1
title: June_0075m_annot_count_table.txtDiel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250754.v1
title: March_0250m_annot_count_table.txtDiel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250760.v1
title: March_0025m_annot_count_table.txtDiel oscillation of microbial gene transcription at different depths in oligotrophic ocean waters

description: These datasets are count tables of annotated transcript abundances for planktonic microbial populations, that were sampled every 4 hours at different depths in the North Pacific Subtroptical Gyre. They are part of the dataset included in a manuscript now in review at Frontiers in Microbiology entitled: Diel oscillation of microbial gene transcription declines with increasing depth in oligotrophic ocean waters, by Alice Vislova, Oscar Sosa, John M. Eppley, Anna E. Romano, and Edward F. DeLong. Deposited August 5, 2019.
DOI: 10.6084/m9.figshare.9250643
title: data-circular phantom

description: Data from full and sparse reconstruction with optoacopustic imaging modality.<br>
DOI: 10.6084/m9.figshare.9250646
title: file for figshare.txt

description: This is just to see if/how accession numbers are assigned.<br>
DOI: 10.6084/m9.figshare.9250661
title: data-vessel phantom

description: Full and sparse reconstruction of vessel like phantoms imaged by optoacoustic modality<br>
DOI: 10.6084/m9.figshare.9250643.v1
title: data-circular phantom

description: Data from full and sparse reconstruction with optoacopustic imaging modality.<br>
DOI: 10.6084/m9.figshare.9250646.v1
title: file for figshare.txt

description: This is just to see if/how accession numbers are assigned.<br>
DOI: 10.6084/m9.figshare.9250586
title: De novo assembly, structural and functional annotation of the genome of Monilinia laxa Mlax316 strain

description: The draft genome assembly of Monilinia laxa Mlax316 strain was obtained using a hybrid assembly strategy with both Illumina short reads and PacBio long reads sequencing technologies. Structural genome annotation including gene, mRNA and CDS predictions, repetitive elements coordinates and masked genomic sequences, as well as functional annotation of the predicted proteins are provided.<br>
DOI: 10.6084/m9.figshare.9250619
title: Ranavirus Experiment 1 R Markdown.html

description: R Markdown Document listing analyses for Experiment 1 in Harrison et al 2019 'Diversity-Stability Dynamics of the Amphibian Skin Microbiome...'
DOI: 10.6084/m9.figshare.9250619.v1
title: Ranavirus Experiment 1 R Markdown.html

description: R Markdown Document listing analyses for Experiment 1 in Harrison et al 2019 'Diversity-Stability Dynamics of the Amphibian Skin Microbiome...'
DOI: 10.6084/m9.figshare.9250586.v1
title: De novo assembly, structural and functional annotation of the genome of Monilinia laxa Mlax316 strain

description: The draft genome assembly of Monilinia laxa Mlax316 strain was obtained using a hybrid assembly strategy with both Illumina short reads and PacBio long reads sequencing technologies. Structural genome annotation including gene, mRNA and CDS predictions, repetitive elements coordinates and masked genomic sequences, as well as functional annotation of the predicted proteins are provided.<br>
DOI: 10.6084/m9.figshare.9250550
title: Rana Nov17 Tax Table.txt

description: Experiment 2 Taxonomy file for Phyloseq
DOI: 10.6084/m9.figshare.9250565
title: Ranavirus 2019 R Markdown Experiment 2.html

description: R Markdown document for Experiment 2 in Harrison et al 2019 'Diversity-Stability Dynamics of the Amphibian Skin Microbiome...'
DOI: 10.6084/m9.figshare.9250550.v1
title: Rana Nov17 Tax Table.txt

description: Experiment 2 Taxonomy file for Phyloseq
DOI: 10.6084/m9.figshare.9250634
title: data

description: Data includes full and sparse reconstruction of mouse and (circular and vessel-like) phantoms imaged with optoacoustic setup.<br>
DOI: 10.6084/m9.figshare.9250541
title: Bedding dips used for stereoplots

description: The dataset contains bedding dips, which were measured in the outcrops of the Keszthely Hills (West Hungary). The bedding dips were illustrated on stereoplots of Fig. 8. <br>
DOI: 10.6084/m9.figshare.9250541.v1
title: Bedding dips used for stereoplots

description: The dataset contains bedding dips, which were measured in the outcrops of the Keszthely Hills (West Hungary). The bedding dips were illustrated on stereoplots of Fig. 8. <br>
DOI: 10.6084/m9.figshare.9250508
title: Drugs to prevent fractures in postmenopausal women

description: Supplementary files for a network meta-analysis
DOI: 10.6084/m9.figshare.9250493
title: Pseudoreference transcriptome

description: Modified reference transcriptome of Littorina saxatilis based on SNP information from L. fabalis and L. obtusata.
DOI: 10.6084/m9.figshare.9250508.v2
title: Drugs to prevent fractures in postmenopausal women

description: Supplementary files for a network meta-analysis
DOI: 10.6084/m9.figshare.9250493.v1
title: Pseudoreference transcriptome

description: Modified reference transcriptome of Littorina saxatilis based on SNP information from L. fabalis and L. obtusata.
DOI: 10.6084/m9.figshare.9250493.v3
title: Pseudoreference transcriptome

description: Modified reference transcriptome of Littorina saxatilis based on SNP information from L. fabalis and L. obtusata.
DOI: 10.6084/m9.figshare.9250493.v2
title: Pseudoreference transcriptome

description: Modified reference transcriptome of Littorina saxatilis based on SNP information from L. fabalis and L. obtusata.
DOI: 10.25392/leicester.data.9250418
title: Revealing Similarities in the Perceptual Span of Young and Older Chinese Readers

description: The folder contain data files and R analysis code for three eye movement experiment that investigate the perceptual span of young and older adult Chinese readers. The experiments used the moving window paradigm, in which text is shown normally within a region (window) around each fixation and text outside this window is masked. Window size was word based in the present experiment and manipulation so that text was presented entirely as normal, within only the fixated word visible, the fixated word and the word to its left visible, the fixated word and one word to its right visible, or the fixated word and two words to its right visible. Text outside the window was replaced by a mask in Experiment 1, visually similar characters in Experiment 2, or blurred to be unreadable in Experiment 3. Separate excel spreadsheets of data are included for Experiments 1-3, along with the R analysis script, and a Bayes Factor analysis script for quantifying the evidence for null and positive effects.<br>Reference: Xie, F., McGowan, V.A., Chang, M., Li, L., White, S.J., Paterson, K.B., Wang, J., & Warrington, K.L. (2020). Revealing similarities in the perceptual span of young and older Chinese readers. The Quarterly Journal of Experimental Psychology, in press.
DOI: 10.25392/leicester.data.9250418.v1
title: Revealing Similarities in the Perceptual Span of Young and Older Chinese Readers

description: The folder contain data files and R analysis code for three eye movement experiment that investigate the perceptual span of young and older adult Chinese readers. The experiments used the moving window paradigm, in which text is shown normally within a region (window) around each fixation and text outside this window is masked. Window size was word based in the present experiment and manipulation so that text was presented entirely as normal, within only the fixated word visible, the fixated word and the word to its left visible, the fixated word and one word to its right visible, or the fixated word and two words to its right visible. Text outside the window was replaced by a mask in Experiment 1, visually similar characters in Experiment 2, or blurred to be unreadable in Experiment 3. Separate excel spreadsheets of data are included for Experiments 1-3, along with the R analysis script, and a Bayes Factor analysis script for quantifying the evidence for null and positive effects.<br>Reference: Xie, F., McGowan, V.A., Chang, M., Li, L., White, S.J., Paterson, K.B., Wang, J., & Warrington, K.L. (2020). Revealing similarities in the perceptual span of young and older Chinese readers. The Quarterly Journal of Experimental Psychology, in press.
DOI: 10.6084/m9.figshare.9250334
title: Lundy Avian Abundance Data 2008-2016

description: This is the annual total of highest count data for each bird species observed on Lundy between 2008 and 2016. Information about taxonomy and status on Lundy is included.
DOI: 10.6084/m9.figshare.9250334.v1
title: Lundy Avian Abundance Data 2008-2016

description: This is the annual total of highest count data for each bird species observed on Lundy between 2008 and 2016. Information about taxonomy and status on Lundy is included.
DOI: 10.6084/m9.figshare.9250181
title: Temperature dependent anomalous fluctuations in water: shift of ≈1 kbar between experiment and classical force field simulations

description: Here we report on the temperature dependence of the anomalous behaviour of water in terms of (i) its growth in tetrahedral structures, (ii) instantaneous spatial correlations from small angle x-ray scattering (SAXS) data, (iii) estimates of thermodynamic response functions of isothermal compressibility and (iv) thermal expansion coefficient. Water’s thermal expansion coefficient is estimated for the first time at supercooled conditions from liquid water’s structure factor. We used previously published data from classical force-fields of TIP4P/2005 and iAMOEBA to compare experimental data with molecular dynamics simulations and observe that these force-fields underestimate water’s anomalous behaviour but perform better upon increasing pressure. We demonstrate that the molecular dynamics simulations can describe better the temperature dependent anomalous behaviour of ambient pressure water if simulated at 1 kbar. The deviation in anomalous fluctuations in the simulations is not restricted to ≈228 K but extends all the way to ambient temperatures.
DOI: 10.6084/m9.figshare.9250181.v1
title: Temperature dependent anomalous fluctuations in water: shift of ≈1 kbar between experiment and classical force field simulations

description: Here we report on the temperature dependence of the anomalous behaviour of water in terms of (i) its growth in tetrahedral structures, (ii) instantaneous spatial correlations from small angle x-ray scattering (SAXS) data, (iii) estimates of thermodynamic response functions of isothermal compressibility and (iv) thermal expansion coefficient. Water’s thermal expansion coefficient is estimated for the first time at supercooled conditions from liquid water’s structure factor. We used previously published data from classical force-fields of TIP4P/2005 and iAMOEBA to compare experimental data with molecular dynamics simulations and observe that these force-fields underestimate water’s anomalous behaviour but perform better upon increasing pressure. We demonstrate that the molecular dynamics simulations can describe better the temperature dependent anomalous behaviour of ambient pressure water if simulated at 1 kbar. The deviation in anomalous fluctuations in the simulations is not restricted to ≈228 K but extends all the way to ambient temperatures.
DOI: 10.6084/m9.figshare.9250175
title: Jablonska_et_al_2019.csv

description: probabilistic reversal learning task performed by mice at the Intellicage system<br>* please note the semicolon-separated values and comma as decimal separator<br>
DOI: 10.6084/m9.figshare.9250175.v1
title: Jablonska_et_al_2019.csv

description: probabilistic reversal learning task performed by mice at the Intellicage system<br>* please note the semicolon-separated values and comma as decimal separator<br>
DOI: 10.6084/m9.figshare.9249911
title: Análisis requerimientos Plan S revistas españolas CCSS 2019

description: Análisis del cumplimiento de los requerimientos del plan S por parte de las revistas españolas en CCSS. El primer análisis se llevó a cabo entre febrero y mayo de 2019 por parte de cuatro evaluadores previo consenso de las limitaciones y eliminación de las ambigüedades del redactado original de los criterios, en la línea de otros trabajos publicadosUna semana después, el 31 de mayo de 2019, los requerimientos fueron actualizados. Se llevó a cabo un segundo análisis revisando los nuevos criterios y se actualizaron los resultados durante julio de 2019
DOI: 10.6084/m9.figshare.9249911.v1
title: Análisis requerimientos Plan S revistas españolas CCSS 2019

description: Análisis del cumplimiento de los requerimientos del plan S por parte de las revistas españolas en CCSS. El primer análisis se llevó a cabo entre febrero y mayo de 2019 por parte de cuatro evaluadores previo consenso de las limitaciones y eliminación de las ambigüedades del redactado original de los criterios, en la línea de otros trabajos publicadosUna semana después, el 31 de mayo de 2019, los requerimientos fueron actualizados. Se llevó a cabo un segundo análisis revisando los nuevos criterios y se actualizaron los resultados durante julio de 2019
DOI: 10.6084/m9.figshare.9249839
title: Change in Quality of Life after a Cancer Diagnosis among a Nationally Representative Cohort of Older Adults in the US

description: Age-related decreases in Quality of Life (QoL) are often compounded by comorbidities, including cancer. This study aimed to examine QoL changes before and after a new cancer diagnosis using data from the National Health and Aging Trend Study (NHATS), linked to Medicare claims (<i>N</i> = 136). There was a significant increase in the relative odds of fair/poor self-reported health and needing help with Activities of Daily Living. There was also a marginal increase in depression, but no change in anxiety or pain scores. Results underscore importance of considering pre-cancer QoL when making treatment decisions for older adult cancer patients.
DOI: 10.6084/m9.figshare.9249809
title: Tumor-associated autoantibodies in combination with alpha-fetoprotein for detection of early stage hepatocellular carcinoma - ELISA and cohort data

description: Tumour associated autoantibodies to recombinant proteins and AFP levels measured via ELISA in the serum of patients with hepatocellular carcinoma, non-cancerous chronic liver disease (NCCLD) and healthy controls. Data for both the discovery and confirmation studies.<br>
DOI: 10.6084/m9.figshare.9249818
title: Loedolff_raw LC-MS/MS data_radish and kale micro-greens

description: Raw LC-MS/MS files: Comparison of phytochemicals in radish and kale micro-greens, under high light bio-fortification.