cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/131640
title: Singlebeam Echosounder data collected during research cruise SR1806 using a Knudsen 3260 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203851
title: Additional file 11: of Factors driving effective population size and pan-genome evolution in bacteria

description: Table S2. Correlation statistics between Ne and genome or pan-genome size for each lifestyle category.Â (XLSX 45 kb)
DOI: 10.7284/131649
title: Splitbeam Echosounder data collected during research cruise SR1806 using a Kongsberg EK80 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203851.v1
title: Additional file 11: of Factors driving effective population size and pan-genome evolution in bacteria

description: Table S2. Correlation statistics between Ne and genome or pan-genome size for each lifestyle category.Â (XLSX 45 kb)
DOI: 10.7284/131751
title: Winch data collected during research cruise SR1806 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131752
title: Winch data collected during research cruise SR1806 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131753
title: Winch data collected during research cruise SR1806 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131679
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR1809 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131674
title: Expendable Probe data collected during research cruise SR1809 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203818
title: Additional file 5: of Parental experience modifies the Mimulus methylome

description: Table S4. GO term enrichment of genes that overlap with CG (a) and non-CG DMRs. (XLSX 62 kb)
DOI: 10.7284/131676
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1809 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203818.v1
title: Additional file 5: of Parental experience modifies the Mimulus methylome

description: Table S4. GO term enrichment of genes that overlap with CG (a) and non-CG DMRs. (XLSX 62 kb)
DOI: 10.7284/131680
title: INS (Inertial Navigation System) data collected during research cruise SR1809 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203809
title: Additional file 4: of Parental experience modifies the Mimulus methylome

description: Table S3. Positions of differentially methylated regions, class and direction of change, and their proximity to transposable elements and genes. (XLSX 459 kb)
DOI: 10.6084/m9.figshare.7203809.v1
title: Additional file 4: of Parental experience modifies the Mimulus methylome

description: Table S3. Positions of differentially methylated regions, class and direction of change, and their proximity to transposable elements and genes. (XLSX 459 kb)
DOI: 10.7284/131785
title: INS (Inertial Navigation System) data collected during research cruise SR1809 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131813
title: INS (Inertial Navigation System) data collected during research cruise SR1809 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131814
title: INS (Inertial Navigation System) data collected during research cruise SR1809 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131673
title: Meteorological Station data collected during research cruise SR1809 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131677
title: Multibeam Echosounder data collected during research cruise SR1809 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203776
title: Additional file 2: of Parental experience modifies the Mimulus methylome

description: Table S2. Re-annotated transposable element positions for RIL 94 genome. (XLSX 12403 kb)
DOI: 10.6084/m9.figshare.7203776.v1
title: Additional file 2: of Parental experience modifies the Mimulus methylome

description: Table S2. Re-annotated transposable element positions for RIL 94 genome. (XLSX 12403 kb)
DOI: 10.7284/131678
title: Multibeam Echosounder data collected during research cruise SR1809 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203767
title: Additional file 1: of Parental experience modifies the Mimulus methylome

description: Table S1. Re-annotated gene positions for RIL 94 genome. (XLSX 1025 kb)
DOI: 10.7284/131760
title: Winch data collected during research cruise SR1809 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203767.v1
title: Additional file 1: of Parental experience modifies the Mimulus methylome

description: Table S1. Re-annotated gene positions for RIL 94 genome. (XLSX 1025 kb)
DOI: 10.7284/131761
title: Winch data collected during research cruise SR1809 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131762
title: Winch data collected during research cruise SR1809 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131687
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1810 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131691
title: INS (Inertial Navigation System) data collected during research cruise SR1810 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131683
title: Meteorological Station data collected during research cruise SR1810 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203728
title: Additional file 6: of Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

description: Table S2. Bin Statistics of CheckM, barrnap (rRNAs) and tRNAscan-SE (tRNAs) for Sacramento, Boston samples and their respective in silico gold standards and pools. (XLSX 115 kb)
DOI: 10.6084/m9.figshare.7203728.v1
title: Additional file 6: of Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

description: Table S2. Bin Statistics of CheckM, barrnap (rRNAs) and tRNAscan-SE (tRNAs) for Sacramento, Boston samples and their respective in silico gold standards and pools. (XLSX 115 kb)
DOI: 10.7284/131688
title: Multibeam Echosounder data collected during research cruise SR1810 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203725
title: Additional file 3: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

description: Table S2. Gene inventory of 5 genomic islands in Bacillus thuringiensis DNG9 AND seven closely related Bacillus sp. (XLS 498 kb)
DOI: 10.6084/m9.figshare.7203725.v1
title: Additional file 3: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

description: Table S2. Gene inventory of 5 genomic islands in Bacillus thuringiensis DNG9 AND seven closely related Bacillus sp. (XLS 498 kb)
DOI: 10.6084/m9.figshare.7203716
title: Additional file 3: of Comparative analysis reveals the complex role of histoblast nest size in the evolution of novel insect abdominal appendages in Sepsidae (Diptera)

description: Table S2. The complete dataset used in this research containing measurements of histoblast cell number, histoblast nest area, and abdominal segment length for both sexes and all sampled species. (CSV 54 kb)
DOI: 10.7284/131689
title: Multibeam Echosounder data collected during research cruise SR1810 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203716.v1
title: Additional file 3: of Comparative analysis reveals the complex role of histoblast nest size in the evolution of novel insect abdominal appendages in Sepsidae (Diptera)

description: Table S2. The complete dataset used in this research containing measurements of histoblast cell number, histoblast nest area, and abdominal segment length for both sexes and all sampled species. (CSV 54 kb)
DOI: 10.6084/m9.figshare.7203713
title: Additional file 5: of Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

description: Table S1. Assembly Statistics of Megahit, MetaSPAdes and SPAdes for Sacramento, Boston samples and their respective in silico gold standards and pools. (XLSX 38 kb)
DOI: 10.7284/131685
title: Singlebeam Echosounder data collected during research cruise SR1810 using a Knudsen 3260 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203713.v1
title: Additional file 5: of Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

description: Table S1. Assembly Statistics of Megahit, MetaSPAdes and SPAdes for Sacramento, Boston samples and their respective in silico gold standards and pools. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.7203707
title: Additional file 2: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

description: Table S1. Average nucleotide identity (ANI) and digital DNA:DNA Hybridization (dDDH) between the genome of DNG9 and those of other Bacillales. (XLS 28 kb)
DOI: 10.7284/131702
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR1811 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203701
title: Additional file 4: of Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

description: Table S3. Sample statistics for quality control, number of reads selected and simulated for gold standards. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.7203704
title: Additional file 2: of Comparative analysis reveals the complex role of histoblast nest size in the evolution of novel insect abdominal appendages in Sepsidae (Diptera)

description: Table S1. Mean histoblast nest cell counts per segment for males and females of sampled species. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7203707.v1
title: Additional file 2: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

description: Table S1. Average nucleotide identity (ANI) and digital DNA:DNA Hybridization (dDDH) between the genome of DNG9 and those of other Bacillales. (XLS 28 kb)
DOI: 10.6084/m9.figshare.7203704.v1
title: Additional file 2: of Comparative analysis reveals the complex role of histoblast nest size in the evolution of novel insect abdominal appendages in Sepsidae (Diptera)

description: Table S1. Mean histoblast nest cell counts per segment for males and females of sampled species. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7203701.v1
title: Additional file 4: of Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

description: Table S3. Sample statistics for quality control, number of reads selected and simulated for gold standards. (XLSX 25 kb)
DOI: 10.7284/131697
title: Expendable Probe data collected during research cruise SR1811 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131699
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1811 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131703
title: INS (Inertial Navigation System) data collected during research cruise SR1811 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203686
title: Additional file 3: of Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

description: Table S4. Summary for all high-quality bins presented in Table 2, analysis of multiple copies of 16S rRNAs detected in MaxBin and CONCOCT derived bins as well as evaluation of misassemblies in gold standards. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.7203686.v1
title: Additional file 3: of Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

description: Table S4. Summary for all high-quality bins presented in Table 2, analysis of multiple copies of 16S rRNAs detected in MaxBin and CONCOCT derived bins as well as evaluation of misassemblies in gold standards. (XLSX 28 kb)
DOI: 10.7284/131789
title: INS (Inertial Navigation System) data collected during research cruise SR1811 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131817
title: INS (Inertial Navigation System) data collected during research cruise SR1811 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131818
title: INS (Inertial Navigation System) data collected during research cruise SR1811 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131694
title: Meteorological Station data collected during research cruise SR1811 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203662
title: Additional file 1: of Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

description: Textfile with commands of tools applied. (TXT 5 kb)
DOI: 10.6084/m9.figshare.7203659
title: Additional file 1: of Health seeking behaviour and delayed management of tuberculosis patients in rural Bangladesh

description: Provided the data set that was used for this manuscript. Total 280 patients were enrolled and analyzed and variables used for this manuscript. (XLS 490 kb)
DOI: 10.6084/m9.figshare.7203662.v1
title: Additional file 1: of Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

description: Textfile with commands of tools applied. (TXT 5 kb)
DOI: 10.7284/131700
title: Multibeam Echosounder data collected during research cruise SR1811 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203656
title: MOESM4 of Genetic diversity and chemical variability of Lippia spp. (Verbenaceae)

description: Additional file 4: Table S4. Chemical data.
DOI: 10.6084/m9.figshare.7203659.v1
title: Additional file 1: of Health seeking behaviour and delayed management of tuberculosis patients in rural Bangladesh

description: Provided the data set that was used for this manuscript. Total 280 patients were enrolled and analyzed and variables used for this manuscript. (XLS 490 kb)
DOI: 10.6084/m9.figshare.7203656.v1
title: MOESM4 of Genetic diversity and chemical variability of Lippia spp. (Verbenaceae)

description: Additional file 4: Table S4. Chemical data.
DOI: 10.7284/131701
title: Multibeam Echosounder data collected during research cruise SR1811 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131696
title: Singlebeam Echosounder data collected during research cruise SR1811 using a Knudsen 3260 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131706
title: Splitbeam Echosounder data collected during research cruise SR1811 using a Kongsberg EK80 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131766
title: Winch data collected during research cruise SR1811 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131767
title: Winch data collected during research cruise SR1811 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131768
title: Winch data collected during research cruise SR1811 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133127
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR1812 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133126
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1812 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203596
title: MOESM1 of Genetic diversity and chemical variability of Lippia spp. (Verbenaceae)

description: Additional file 1: Table S1. Binary data.
DOI: 10.7284/133164
title: Gravimeter data collected during research cruise SR1812 using a Bell BGM-3 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203596.v1
title: MOESM1 of Genetic diversity and chemical variability of Lippia spp. (Verbenaceae)

description: Additional file 1: Table S1. Binary data.
DOI: 10.7284/133128
title: INS (Inertial Navigation System) data collected during research cruise SR1812 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133133
title: INS (Inertial Navigation System) data collected during research cruise SR1812 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133134
title: INS (Inertial Navigation System) data collected during research cruise SR1812 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133135
title: INS (Inertial Navigation System) data collected during research cruise SR1812 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133129
title: Winch data collected during research cruise SR1812 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7203563
title: MOESM1 of An improved secretion signal enhances the secretion of model proteins from Pichia pastoris

description: Additional file 1: Figure S1. The S. cerevisiae α-factor secretion signal. Depicted is the 5′ portion of the MFα1 gene encoding pre-pro-α-factor. This sequence encodes the Leu42 variant. Cleavage sites for signal peptidase and Kex2 are marked, and Leu42 and Asp83 are highlighted. This image was generated using SnapGene software. Figure S2. Low variation in secreted protein levels between clones. Each of the indicated constructs was transformed into P. pastoris cells, and six independent clones with confirmed single integrations were cultured and then analyzed as in Fig. 2a to measure extracellular protein. For each construct, the average protein level for the six clones was defined as 1.0. Two representative clones of a given construct were chosen for further analysis. The red boxes represent E2-Crimson constructs, and the black boxes represent BTL2 constructs. Figure S3. Immunoblot showing cell-associated and secreted E2-Crimson. Strains that expressed E2-Crimson fused to the indicated secretion signals were grown and induced. Fractions containing cell-associated E2-Crimson (“C”) or E2-Crimson in the extracellular medium (“M”) were subjected to SDS-PAGE and immunoblotting. The molecular weight (“MW”) marker was the Precision Plus Protein Dual Color Standards (Bio-Rad). Molecular weights of the protein standards are indicated. Figure S4. Large image fields of cells expressing the various constructs. From the experiment of Fig. 3, large image fields were captured to illustrate that the fluorescence patterns were consistent among the cells in a population, and that cells expressing constructs with the α-factor signal sequence were often unusually large. Scale bar, 2 μm. Figure S5. Distribution of ER-targeted GFP-HDEL before induced expression of E2-Crimson constructs. The same cultures shown in Fig. 4b were examined by fluorescence microscopy before methanol-induced expression of the E2-Crimson constructs. All of the strains showed a typical ER pattern for GFP-HDEL. Scale bar, 2 μm. Figure S6. Theoretical prediction of aggregation propensities in the two allelic variants of the α-factor pro region. Left, the Leu42 variant of the α-factor pro region was analyzed using the online AGGRESCAN tool ( http://bioinf.uab.es/aap/ ). The position of Leu42 in a predicted aggregation-prone region is marked. Right, the same analysis was performed for the Ser42 variant of the α-factor pro region.