cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3613934_d8
title: Additional file 5: Table S2. of Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma

description: Estimated subclonal frequencies of propagated somatic mutations in the evolutionary trajectory. Annotated information corresponding to somatic single-nucleotide variants (SSNVs) was taken from Additional file 3: Table S1. Mean cellular frequencies from a post-burn-in of 50,000 chains of MCMC analysis in PyClone are shown with subclonal information. (XLSX 15.3 kb)
DOI: 10.6084/m9.figshare.c.3613961_d1
title: Additional file 4: of Next-generation sequencing-based detection of germline L1-mediated transductions

description: Contains IGV representations from each experimentally validated source locus (two representations: 5 and 10Â kb surrounding each source locus). (ZIP 46533Â kb)
DOI: 10.25919/jgj4-5r78
title: Parkes observations for project P1345 semester 2024OCTS_10

description: This proposal aims to obtain timing solutions and constrain burst rates and spin down properties of a sample of new rotating radio transients (RRATs) discovered with the ASKAP CRAFT Coherent upgrade (CRACO) system. 
 In the last 6-months of commissioning, CRACO discovered and localised 10 new RRATs, identified by their sporadic pulses with dispersion measures (DM) consistent with Galactic objects. 
 
 We request 15h of Parkes time split into three 30min observations spanning 6-months for each target. 
 This will allow us to constrain phase-coherent timing solutions given that we already have arcsec-precision interferometric localisations. 
 Our main science goals are: 
 1) to measure their burst rates, periods, and spin-down properties; 
 2) to assess their nulling fraction and emission mechanism
 3) to determine if the CRACO RRATs are different to the known RRATs population.
DOI: 10.15468/dl.r7q8de
title: Occurrence Download

description: A dataset containing 626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Korea, Republic of, Japan)",
 "TaxonKey is Gerris latiabdominis Miyamoto, 1958",
 "Year 2000-2019"
 ]
}

 The dataset includes 626 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032764-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kevd9
title: Occurrence Download

description: A dataset containing 467 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Romerolagus diazi (Ferrari-Pérez, 1893)"
 ]
}

 The dataset includes 467 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032765-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613976_d4
title: Additional file 7: of Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions

description: GO functional categories of flax closest orthologs in Arabidopsis. The flax gene sequences from Additional file 4 where used to search the Arabidopsis closest ortholog, and these were used for functional classification using Gene Ontology (see Methods). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3613976_d6
title: Additional file 1: of Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions

description: (A-E). Primers. Sets of primers for all experiments performed. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3613991_d1
title: MOESM1 of Molecular forensics in avian conservation: a DNA-based approach for identifying mammalian predators of ground-nesting birds and eggs

description: Additional file 1. Predator genotypes in genepop format with each PCR replicate included for microsatellites set A in genepop format (.prn).
DOI: 10.6084/m9.figshare.c.3613991_d2
title: MOESM2 of Molecular forensics in avian conservation: a DNA-based approach for identifying mammalian predators of ground-nesting birds and eggs

description: Additional file 2. Predator genotypes in genepop format with each PCR replicate included for microsatellites set B in genepop format (.prn).
DOI: 10.6084/m9.figshare.c.3614021_d1
title: Additional file 1: of Cancer patients participating in a lifestyle intervention during chemotherapy greatly over-report their physical activity level: a validation study

description: Availability of data and materials. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3614036_d1
title: Additional file 1: Table S1. of Colonization of Enteroaggregative Escherichia coli and Shiga toxin-producing Escherichia coli in chickens and humans in southern Vietnam

description: Patterns of antimicrobial resistance in EAEC and STEC isolated from humans in southern Vietnam. (XLSX 10 kb)
DOI: 10.25919/5fcr-bk64
title: Parkes observations for project P1327 semester 2024APRS_18

description: The radio radiation neutron star include objects with spin periods ranging from a few milliseconds to tens of seconds. In the past years, however, the discovery of ultra-long period radio transient sources has posed a new challenge to the classical theoretical framework of the neutron star magnetospheric dipole model. This proposal aims to study the unique characteristics of the radio emitting neutron star, PSR J0901-4046, and the similarity of its spectro-polarimetric features with fast radio bursts (FRBs). By observing its single-pulse structures and polarization profiles, we hope to understand the origin of radio emission from magnetars and establish the potential association between Galactic neutron stars and FRBs. Using the Parkes/Murriyang 64-m radio telescope equipped with the Ultra-Wideband Low-Frequency receiver (UWL), we propose to conduct a total of 24-hour observations to search for single pulses. The expected outcomes include detecting rich single pulses with unique characteristics and providing insights into neutron star populations and their connection to FRBs.
DOI: 10.6084/m9.figshare.c.3614078_d2
title: Additional file 3: of Investigation of SLA4A3 as a candidate gene for human retinal disease

description: All sequence variants identified. Description of all sequence variants identified, including genomic location, nucleotide and amino acid change, predicted effect of splice sites, and SNP identifier. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3614081_d3
title: Additional file 1: Table S1. of Novel factors of Anopheles gambiae haemocyte immune response to Plasmodium berghei infection

description: dsRNA haemocyte-specific library. The main features of target genes and dsRNAs used in this study are presented. DsRNA IDs, KD phenotypes in cell-based RNAi screens [5], VectorBase gene IDs, Affymetrix probe codes and previous ENSEMBL IDs are listed in columns A, B, C, D and E, respectively. Circulating haemocyte microarray information from [2] are summarized in columns F (cluster), G (normalized haemocyte value), H (normalized carcass value) and I (normalized head value). Comments (name and/or homology of An. gambiae genes) and InterPro domain data are reported in columns J and K, respectively. Drosophila melanogaster orthologs are shown in column L, and corresponding FlyBase IDs in column M. D. melanogaster KD phenotypes according to the GenomeRNAi database are reported in column N. This table is modified from Lombardo et al. 2013 [5]. (XLS 81 kb)
DOI: 10.15468/dl.dpqgpm
title: Occurrence Download

description: A dataset containing 573 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 573 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032766-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvfwpc
title: Occurrence Download

description: A dataset listing the 8 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-101.30232558139535 17.120639534883722,-97.30232558139535 17.120639534883722,-97.30232558139535 21.120639534883722,-101.30232558139535 21.120639534883722,-101.30232558139535 17.120639534883722))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dendroctonus W.F.Erichson, 1836"
 ]
}

 The dataset's 8 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032757-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614108_d6
title: Additional file 1: of Widespread parainflammation in human cancer

description: List of 840 inflammatory response genes based on three manually curated databases: inflammatory response gene lists curated by Ingenuity, InnateDB innate immunity genes, and the Immunogenetic Related Information Source (IRIS). (XLSX 74 kb)
DOI: 10.6084/m9.figshare.c.3614108_d7
title: Additional file 2: of Widespread parainflammation in human cancer

description: Results from differential expression analyses of CKIÎą-deficient and CKIÎą-p53-deficient gut epithelium versus wild-type gut epithelium. Raw RNA-seq counts were obtained from Pribluda et al. [6]. Each set has two replicates. The analysis was performed using the DESeq2 package for R. (XLSX 4406 kb)
DOI: 10.6084/m9.figshare.c.3614108_d8
title: Additional file 4: of Widespread parainflammation in human cancer

description: Results from an Ingenuity upstream regulator analysis performed on the 40 PI genes. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.c.3614108_d9
title: Additional file 9: of Widespread parainflammation in human cancer

description: Parainflammation (PI) scores for 6523 primary tumors and 582 patient-matched normal samples of 18 cancer types from TCGA. The PI score is calculated using ssGSEA for the 40 PI genes using the immune-adjusted expression profiles. (XLSX 260 kb)
DOI: 10.6084/m9.figshare.c.3614162_d1
title: MOESM2 of The cnidarian Hydractinia echinata employs canonical and highly adapted histones to pack its DNA

description: Additional file 2. S2. List of primers used in this study.
DOI: 10.6084/m9.figshare.c.3614162_d2
title: MOESM4 of The cnidarian Hydractinia echinata employs canonical and highly adapted histones to pack its DNA

description: Additional file 4. S4. Summary table of all experiments and results.
DOI: 10.15468/dl.azyrvs
title: Occurrence Download

description: A dataset containing 14305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-23.73934 15.36351,-23.78949 15.32405,-23.81512 15.23043,-23.82069 14.9924,-23.70925 14.91104,-23.48301 14.89209,-23.45626 14.91104,-23.38271 14.98348,-23.39051 15.07152,-23.50084 15.16848,-23.63235 15.31002,-23.73934 15.36351))"
 ]
}

 The dataset includes 14305 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032767-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614162_d8
title: MOESM9 of The cnidarian Hydractinia echinata employs canonical and highly adapted histones to pack its DNA

description: Additional file 9. S9. Table showing mass-spectrometry results following trypsin digest of acid extracted histones from sperm of Hydractinia echinata.
DOI: 10.6084/m9.figshare.c.3614207_d3
title: Additional file 5 of Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL)

description: Table S3. CpG-specific annotations for optimal L-DMR library identified by the IDOL algorithm. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3614234_d1
title: Additional file 2: of Identification and expression analysis of genes related to calyx persistence in Korla fragrant pear

description: GO enrichment of up-regulated DEGs in SC_hua vs TL_hua. GO_accession: The ID of nodal point. Description: GO description. Term_type: The category of GO. Over_represented_pValue: The pValue of enrichment. Corrected_pValue: The pValue is after correction. DEG_item: The DEGs related to this GO. DEG_list: All the DEGs annotated in GO. Bg_item: The background genes related to this GO. Bg_list: The background genes annoted in this GO. Gene_names: The DEGsâ   ID related to this GO. (XLS 82Â kb)
DOI: 10.6084/m9.figshare.c.3614207_d4
title: Additional file 3 of Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL)

description: Table S2. CpG-specific annotations for the candidate L-DMR library used in the IDOL algorithm. (XLSX 241 kb)
DOI: 10.6084/m9.figshare.c.3614234_d2
title: Additional file 3: of Identification and expression analysis of genes related to calyx persistence in Korla fragrant pear

description: The top 20 KEGG pathways enrichment of DEGs in SC_hua vs TL_hua. (XLS 1Â kb)
DOI: 10.15468/dl.4fdutw
title: Occurrence Download

description: A dataset containing 836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-23.2583 15.09445,-23.04674 15.09445,-23.04674 15.36163,-23.2583 15.36163,-23.2583 15.09445))"
 ]
}

 The dataset includes 836 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032768-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614270_d1
title: MOESM3 of Rationale and design of a multicenter randomized controlled study to evaluate the preventive effect of ipragliflozin on carotid atherosclerosis: the PROTECT study

description: Additional file 3. Cardiovascular functional tests.
DOI: 10.6084/m9.figshare.c.3614264_d2
title: Additional file 7: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

description: Differentially regulated genes between PdQTL and PtQTL categories, at each time point. The table describes the name of each poplar gene based on all three main annotations of the genome (v. 1.1, v. 2.2 and v. 3.0), the name of the probe on the microarray, and the gene expression difference (log2) between individual in the PdQTL and PtQTL categories. Data is presented only for those genes and time points were the difference in expression between PdQTL and PtQTL was significant for an FDR adjusted p-value of 5Â %. (XLSX 139Â kb)
DOI: 10.6084/m9.figshare.c.3614264_d3
title: Additional file 9: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

description: Gene membership of Modulated Modularity Clusters. Genes membership of Modulated Modularity Clusters detected based on genes displaying a similar pattern of expression differences between genotypes from the PtQTL and PdQTL categories, at all time points. (XLSX 262Â kb)
DOI: 10.6084/m9.figshare.c.3614270_d2
title: MOESM2 of Rationale and design of a multicenter randomized controlled study to evaluate the preventive effect of ipragliflozin on carotid atherosclerosis: the PROTECT study

description: Additional file 2. Blood examination.
DOI: 10.6084/m9.figshare.c.3614255_d10
title: Additional file 1: of Perspectives on modelling the distribution of ticks for large areas: so far so good?

description: A set of 6213 pairs of coordinates of ticks and hosts, as compiled from the literature. The dataset is in csv format and includes (i) specific binomial name of the tick, (ii) Name of the Genus of the tick, (iii) Specific binomial name of the host, (iv) Higher systematic details (Genus, Family and Order) of the host, (v) Country of collection, province (if not in Europe) or NUTS3 (standard denomination of European administrative units), and (vi) Latitude and Longitude in decimal degrees for 5630 records. Records that are not georeferenced records, but refer to administrative divisions, are also included for completeness. (R 2Â kb)
DOI: 10.6084/m9.figshare.c.3614207_d9
title: Additional file 6 of Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL)

description: Table S4. Comparison of prediction performance between the optimal IDOL library and EstimateCellCounts within both testing sets. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3614255_d11
title: Additional file 10: of Perspectives on modelling the distribution of ticks for large areas: so far so good?

description: A script in the R environment for programming that loads images from MODIS repositories, transformed to monthly averages, and calculates the coefficients of an harmonic regression, as proposed in this paper as explanatory variables. The example in the script loads the monthly images of temperature for a period of several years, and saves the coefficients. (R 6Â kb)
DOI: 10.6084/m9.figshare.c.3614270_d3
title: MOESM4 of Rationale and design of a multicenter randomized controlled study to evaluate the preventive effect of ipragliflozin on carotid atherosclerosis: the PROTECT study

description: Additional file 4. Trial organization.
DOI: 10.5281/zenodo.14432034
title: 1,450 bacterial genomes recovered from broiler feces

description: We employed a dual approach, combining culture-dependent and culture-independent methods, to obtain a strain-level resolution genome catalog related to the production cycle of commercial broilers. This catalog consists of 61 isolates and 1,389 metagenome-assembled genomes, all resolved to the bacterial lineage.
DOI: 10.5281/zenodo.14432035
title: 1,450 bacterial genomes recovered from broiler feces

description: We employed a dual approach, combining culture-dependent and culture-independent methods, to obtain a strain-level resolution genome catalog related to the production cycle of commercial broilers. This catalog consists of 61 isolates and 1,389 metagenome-assembled genomes, all resolved to the bacterial lineage.
DOI: 10.6084/m9.figshare.c.3614273_d1
title: Additional file 1: of The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress

description: List of differentially expressed (DE) genes encoding mRNA under each genotoxic stress. (XLSX 96 kb)
DOI: 10.6084/m9.figshare.c.3614270_d4
title: MOESM1 of Rationale and design of a multicenter randomized controlled study to evaluate the preventive effect of ipragliflozin on carotid atherosclerosis: the PROTECT study

description: Additional file 1. Guidepost for appropriate glycemic control in Japan HbA1cÂ
DOI: 10.6084/m9.figshare.c.3614273_d2
title: Additional file 5: of The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress

description: Clustering of DE genes encoding mRNA. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3614273_d3
title: Additional file 6: of The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress

description: Identified ncRNAs under each genotoxic stress. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3614318_d2
title: Additional file 5: of Nested coevolutionary networks shape the ecological relationships of ticks, hosts, and the Lyme disease bacteria of the Borrelia burgdorferi (s.l.) complex

description: Complete information for the ticks in the B. burgdorferi (BBG) epidemiological network. The table includes values of centrality (betweenness centrality, eigenvector centrality and PageRank), the clustering coefficient, the cluster in which the ticks circulate, the phylogenetic diversity (PD) of the hosts, the richness of the genera of hosts (GR), the circulation capacity (CC) for B. burgdorferi, the mean pairwise distances of hosts in the phylogenetic tree of the genera of hosts (MPD) and the significance of the MPD index (MPD-P). Negative MPD values and values of MPD-P near 0.01 indicate strong phylogenetic clustering of the hosts of the tick; positive MPD values and higher MPD-P values indicate weak phylogenetic clustering of the hosts of the tick. (CSV 15 kb)
DOI: 10.6084/m9.figshare.c.3614336_d1
title: Additional file 1 of Recovery and validation of Mars ionospheric electron density profiles from Mariner 9

description: The 114 Mariner 9 electron density profiles accompany this article as supplemental information. Each profile is provided in an ASCII text file. A header in the file provides orbit number, date, latitude, longitude, solar zenith angle, radius of reference areoid at that latitude and longitude, radial distance to the maximum electron density in the profile, and the value of the maximum electron density. The body of the file consists of three columns: radial distance, altitude, and electron density. The file naming convention is “orbitXXX.txt” where “XXX” is the orbit number, which ranges from “001” to “450”. (ZIP 269 kb)
DOI: 10.15468/dl.xpxp6j
title: Occurrence Download

description: A dataset containing 460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-24.37641 15.07384,-24.45579 15.03278,-24.52696 14.95614,-24.51054 14.90139,-24.48317 14.8617,-24.438 14.8179,-24.38599 14.796,-24.26418 14.84117,-24.24228 14.86991,-24.26281 15.03826,-24.37641 15.07384))"
 ]
}

 The dataset includes 460 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032769-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614318_d12
title: Additional file 7: of Nested coevolutionary networks shape the ecological relationships of ticks, hosts, and the Lyme disease bacteria of the Borrelia burgdorferi (s.l.) complex

description: Complete information for the genera of vertebrates (hosts and/or reservoirs) in the B. burgdorferi epidemiological network. The table includes values of centrality (betweenness centrality, eigenvector centrality and PageRank), the clustering coefficient, and the cluster in which the organisms circulate. (CSV 82 kb)
DOI: 10.6084/m9.figshare.c.3614399_d1
title: MOESM1 of Effect of nutrition education on the knowledge scores of urban households with home gardens in Morogoro, Tanzania

description: Additional file 1. Dataset.
DOI: 10.6084/m9.figshare.c.3614318_d13
title: Additional file 1: of Nested coevolutionary networks shape the ecological relationships of ticks, hosts, and the Lyme disease bacteria of the Borrelia burgdorferi (s.l.) complex

description: Complete set of data related to the associations of species of ticks, vertebrates and BBG as obtained by a literature search. (CSV 580 kb)
DOI: 10.6084/m9.figshare.c.3614402_d2
title: MOESM1 of Exceptionally long-range haplotypes in Plasmodium falciparum chromosome 6 maintained in an endemic African population

description: Additional file 1. Â Additional tables of raw illumina derived genotypes, repeat motif distribution, microsatellite fragment sizes and analysis, PCR primers and probes.
DOI: 10.6084/m9.figshare.c.3614411_d4
title: Additional file 9: Table S6. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

description: Comparing polymorphism data in the 48 ‘Baccara’ x ‘PI180693’ RILs from a set of 953 SNP genotyped both in WGGBS and LGC Kasp™ assay methods, ordered according to their genetic position on the BP-WGGBS map. “A” corresponds to ‘Baccara’ homozygous parental genotype, “B” to ‘PI180693’ homozygous parental genotype, “H” to an heterozygous genotype, “-” indicates uncalled data. (XLSX 439 kb)
DOI: 10.6084/m9.figshare.c.3614438_d4
title: Additional file 11: of Distinct transcriptome responses to water limitation in isohydric and anisohydric grapevine cultivars

description: STEM analysis on the 269 modulated genes in berries. (XLSX 959 kb)