cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/118610
title: Multiplexed data collected during research cruise AT29-01 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7699181
title: MOESM3 of Coordination between TGF-β cellular signaling and epigenetic regulation during epithelial to mesenchymal transition

description: Additional file 3: Table S2. Time-course monitoring of phosphorylation site abundance changes during EMT. (A) Total list of identified and quantified phosphosites across five time points. Protein IDs refer to UniProt database. Mod site highlights the phosphorylated S/T or Y residue within protein amino acid (aa) sequence. Localization prob is the confidence score for site localization of the phosphorylation (1 means fully unambiguous). Sequence window highlights the 31 aa residue within protein. Phosphosite intensity is the raw intensity and the normalized log2 transformed phosphosite abundance adjusted based on protein abundance (average of biological replicates, n = 3). 0 min_S and 0 min_L refer to Fig. 1b. ANOVA p value describes the ANOVA p value of phosphorylation levels. Cluster number refers to Figure S4A (blank means the indicated phosphosite was not used for clustering); isClusterMember determines whether the protein belongs significantly to the cluster assigned; ‘is Kinase’ determines whether the protein belongs to kinome; ‘is related with histone PTMs’ determines whether the protein has been described with histone PTMs modifiers. (B) Kinases predicted by iGPS which are responsible for significantly regulated (p value
DOI: 10.6084/m9.figshare.7699181.v1
title: MOESM3 of Coordination between TGF-β cellular signaling and epigenetic regulation during epithelial to mesenchymal transition

description: Additional file 3: Table S2. Time-course monitoring of phosphorylation site abundance changes during EMT. (A) Total list of identified and quantified phosphosites across five time points. Protein IDs refer to UniProt database. Mod site highlights the phosphorylated S/T or Y residue within protein amino acid (aa) sequence. Localization prob is the confidence score for site localization of the phosphorylation (1 means fully unambiguous). Sequence window highlights the 31 aa residue within protein. Phosphosite intensity is the raw intensity and the normalized log2 transformed phosphosite abundance adjusted based on protein abundance (average of biological replicates, n = 3). 0 min_S and 0 min_L refer to Fig. 1b. ANOVA p value describes the ANOVA p value of phosphorylation levels. Cluster number refers to Figure S4A (blank means the indicated phosphosite was not used for clustering); isClusterMember determines whether the protein belongs significantly to the cluster assigned; ‘is Kinase’ determines whether the protein belongs to kinome; ‘is related with histone PTMs’ determines whether the protein has been described with histone PTMs modifiers. (B) Kinases predicted by iGPS which are responsible for significantly regulated (p value
DOI: 10.6084/m9.figshare.7699190.v1
title: Additional file 2: of DNA methylome profiling of all-cause mortality in comparison with age-associated methylation patterns

description: Table S1 List of significant CpGs (FDRâ
DOI: 10.7284/118605
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT29-01 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7699175
title: MOESM2 of Coordination between TGF-β cellular signaling and epigenetic regulation during epithelial to mesenchymal transition

description: Additional file 2: Table S1. Time-course monitoring of protein abundance changes during EMT. (A) Total list of identified and quantified proteins across five time points. Protein IDs refer to UniProt database. Peptide counts highlight the number of razor and unique peptides used for protein quantification. Protein intensity is the raw intensity, and the normalized log2 transformed protein abundance (average of biological replicates, n = 3). 0 min_S and 0 min_L refer to Fig. 1b. ANOVA p value describes the ANOVA p value of protein levels. Cluster number refers to Figure S4A (blank means protein not used for clustering); isClusterMember determines whether the protein belongs significantly to the cluster assigned. (B) Annotation for cluster proteins. (C) GO-BP (gene ontology biological processes) enrichment results for cluster proteins.
DOI: 10.6084/m9.figshare.7699175.v1
title: MOESM2 of Coordination between TGF-β cellular signaling and epigenetic regulation during epithelial to mesenchymal transition

description: Additional file 2: Table S1. Time-course monitoring of protein abundance changes during EMT. (A) Total list of identified and quantified proteins across five time points. Protein IDs refer to UniProt database. Peptide counts highlight the number of razor and unique peptides used for protein quantification. Protein intensity is the raw intensity, and the normalized log2 transformed protein abundance (average of biological replicates, n = 3). 0 min_S and 0 min_L refer to Fig. 1b. ANOVA p value describes the ANOVA p value of protein levels. Cluster number refers to Figure S4A (blank means protein not used for clustering); isClusterMember determines whether the protein belongs significantly to the cluster assigned. (B) Annotation for cluster proteins. (C) GO-BP (gene ontology biological processes) enrichment results for cluster proteins.
DOI: 10.7284/118604
title: Fluorometer data collected during research cruise AT29-01 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7699163
title: Additional file 2: of Modeling double strand break susceptibility to interrogate structural variation in cancer

description: Tables S1. bigWig files from http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi / used to create feature sets. Table S2. Extended NHEK Feature Set. Table S3. Sources of annotation files and their names. (XLSX 62 kb)
DOI: 10.7284/118603
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT29-01 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7699151
title: Additional file 6: of Rating the quality of teamworkâ a comparison of novice and expert ratings using the Team Emergency Assessment Measure (TEAM) in simulated emergencies

description: Data Set (Team Emergency Assessment Measure scores of novices and experts rating 7 teams rotating through 6 cases each). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7699163.v1
title: Additional file 2: of Modeling double strand break susceptibility to interrogate structural variation in cancer

description: Tables S1. bigWig files from http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi / used to create feature sets. Table S2. Extended NHEK Feature Set. Table S3. Sources of annotation files and their names. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.7699151.v1
title: Additional file 6: of Rating the quality of teamworkâ a comparison of novice and expert ratings using the Team Emergency Assessment Measure (TEAM) in simulated emergencies

description: Data Set (Team Emergency Assessment Measure scores of novices and experts rating 7 teams rotating through 6 cases each). (XLSX 15 kb)
DOI: 10.7284/118606
title: Meteorological Station data collected during research cruise AT29-01 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118607
title: Meteorological Station data collected during research cruise AT29-01 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.3820319
title: Integrative modeling of the in-cell architecture of the yeast Nuclear Pore Complex

description: Repository with source code files and input files utilized for integrative modeling of the in-cell architecture of the yeast Nuclear Pore Complex (ScNPC). All output integrative models of ScNPCs associated with the following work are included: "In-cell architecture of the nuclear pore and snapshots of its turnover. Matteo Allegretti, Christian E. Zimmerli, Vasileios Rantos, Florian Wilfling, Paolo Ronchi, Herman K.H. Fung, Chia-Wei Lee, Wim Hagen, Beata Turonova, Kai Karius, Mandy Börmel, Xiaojie Zhang, Christoph Müller, Yannick Schwab, Julia Mahamid, Boris Pfander, Jan Kosinski, Martin Beck. Nature, 2020" For questions/support please <strong>contact</strong>: jan.kosinski@embl.de or vasileios.rantos@embl-hamburg.de
DOI: 10.7284/118608
title: Radiometer data collected during research cruise AT29-01 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.3820318
title: Integrative modeling of the in-cell architecture of the yeast Nuclear Pore Complex

description: Repository with source code files and input files utilized for integrative modeling of the in-cell architecture of the yeast Nuclear Pore Complex (ScNPC). All output integrative models of ScNPCs associated with the following work are included: "In-cell architecture of the nuclear pore and snapshots of its turnover. Matteo Allegretti, Christian E. Zimmerli, Vasileios Rantos, Florian Wilfling, Paolo Ronchi, Herman K.H. Fung, Chia-Wei Lee, Wim Hagen, Beata Turonova, Kai Karius, Mandy Börmel, Xiaojie Zhang, Christoph Müller, Yannick Schwab, Julia Mahamid, Boris Pfander, Jan Kosinski, Martin Beck. Nature, 2020" For questions/support please <strong>contact</strong>: jan.kosinski@embl.de or vasileios.rantos@embl-hamburg.de
DOI: 10.6084/m9.figshare.7699118
title: Additional file 1 of Analyzing a co-occurrence gene-interaction network to identify disease-gene association

description: Document containing the list of genes for each cancer type according to MalaCards and NCIâ s GDC. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.7699112
title: MOESM2 of rBAN: retro-biosynthetic analysis of nonribosomal peptides

description: Additional file 2. Monomeric graph of Vancomycin. Example of a monomeric graph provided by rBAN.
DOI: 10.6084/m9.figshare.7699118.v1
title: Additional file 1 of Analyzing a co-occurrence gene-interaction network to identify disease-gene association

description: Document containing the list of genes for each cancer type according to MalaCards and NCIâ s GDC. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.7699112.v1
title: MOESM2 of rBAN: retro-biosynthetic analysis of nonribosomal peptides

description: Additional file 2. Monomeric graph of Vancomycin. Example of a monomeric graph provided by rBAN.
DOI: 10.7284/118609
title: Radiometer data collected during research cruise AT29-01 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118621
title: Multiplexed data collected during research cruise AT29-02 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118614
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT29-02 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118615
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AT29-02 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118613
title: Expendable Probe data collected during research cruise AT29-02 using a Sippican MK12 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118612
title: Fluorometer data collected during research cruise AT29-02 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7699055
title: Additional file 7: of Targeted mutation detection in breast cancer using MammaSeqâ ˘

description: Data file 2 Single nucleotide variants detected by MammaSeq in solid tumors.Â (XLSX 255 kb)
DOI: 10.6084/m9.figshare.7699055.v1
title: Additional file 7: of Targeted mutation detection in breast cancer using MammaSeqâ ˘

description: Data file 2 Single nucleotide variants detected by MammaSeq in solid tumors.Â (XLSX 255 kb)
DOI: 10.7284/118611
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT29-02 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118617
title: Meteorological Station data collected during research cruise AT29-02 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7699028
title: Additional file 2: of Targeted mutation detection in breast cancer using MammaSeqâ ˘

description: Data file 1 Genomic location of mutations in MammaSeq panel.Â (XLSX 113 kb)
DOI: 10.7284/118618
title: Meteorological Station data collected during research cruise AT29-02 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7699028.v1
title: Additional file 2: of Targeted mutation detection in breast cancer using MammaSeqâ ˘

description: Data file 1 Genomic location of mutations in MammaSeq panel.Â (XLSX 113 kb)
DOI: 10.7284/118616
title: Multibeam Echosounder data collected during research cruise AT29-02 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7699007
title: Additional file 10: of Targeted mutation detection in breast cancer using MammaSeqâ ˘

description: Data file 3 Single nucleotide variants detected by MammaSeqÂ in cfDNA.Â (XLSX 60 kb)
DOI: 10.6084/m9.figshare.7699007.v1
title: Additional file 10: of Targeted mutation detection in breast cancer using MammaSeqâ ˘

description: Data file 3 Single nucleotide variants detected by MammaSeqÂ in cfDNA.Â (XLSX 60 kb)
DOI: 10.7284/118619
title: Radiometer data collected during research cruise AT29-02 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118620
title: Radiometer data collected during research cruise AT29-02 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118630
title: Multiplexed data collected during research cruise AT29-03 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7698974
title: Additional file 6: of Genomic prediction of tuberculosis drug-resistance: benchmarking existing databases and prediction algorithms

description: The total number of samples available and the estimated rate of misclassification of phenotypic DST results for each drug. This file presents number of samples with resistance status among the 6756â TB isolates for each drug and the estimated rate of misclassification estimated from the latent class model. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7698965
title: Additional file 4: of Predicting clinically promising therapeutic hypotheses using tensor factorization

description: Results of benchmark experiments. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7698968
title: Additional file 5: of Genomic prediction of tuberculosis drug-resistance: benchmarking existing databases and prediction algorithms

description: Composition of the dataset analysed in this study. This file presents the details of the databases and studies from which data for the 6756â TB isolates is obtained. (XLSX 115 kb)
DOI: 10.6084/m9.figshare.7698974.v1
title: Additional file 6: of Genomic prediction of tuberculosis drug-resistance: benchmarking existing databases and prediction algorithms

description: The total number of samples available and the estimated rate of misclassification of phenotypic DST results for each drug. This file presents number of samples with resistance status among the 6756â TB isolates for each drug and the estimated rate of misclassification estimated from the latent class model. (XLSX 9 kb)
DOI: 10.7284/118624
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT29-03 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7698968.v1
title: Additional file 5: of Genomic prediction of tuberculosis drug-resistance: benchmarking existing databases and prediction algorithms

description: Composition of the dataset analysed in this study. This file presents the details of the databases and studies from which data for the 6756â TB isolates is obtained. (XLSX 115 kb)
DOI: 10.6084/m9.figshare.7698956
title: Additional file 3: of Predicting clinically promising therapeutic hypotheses using tensor factorization

description: Target-only attribute data file. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.7698965.v1
title: Additional file 4: of Predicting clinically promising therapeutic hypotheses using tensor factorization

description: Results of benchmark experiments. (XLSX 11 kb)
DOI: 10.7284/118623
title: Fluorometer data collected during research cruise AT29-03 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7698956.v1
title: Additional file 3: of Predicting clinically promising therapeutic hypotheses using tensor factorization

description: Target-only attribute data file. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.7698944
title: Additional file 2: of Predicting clinically promising therapeutic hypotheses using tensor factorization

description: Target-indication association evidence data file. (ZIP 227 kb)
DOI: 10.7284/118622
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT29-03 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7698944.v1
title: Additional file 2: of Predicting clinically promising therapeutic hypotheses using tensor factorization

description: Target-indication association evidence data file. (ZIP 227 kb)
DOI: 10.7284/118626
title: Meteorological Station data collected during research cruise AT29-03 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7698929
title: Additional file 1: of Genomic prediction of tuberculosis drug-resistance: benchmarking existing databases and prediction algorithms

description: Studies reviewed for the LitRev data set. This file presents the list of studies surveyed for LitRev. (XLSX 27 kb)
DOI: 10.7284/118627
title: Meteorological Station data collected during research cruise AT29-03 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7698929.v1
title: Additional file 1: of Genomic prediction of tuberculosis drug-resistance: benchmarking existing databases and prediction algorithms

description: Studies reviewed for the LitRev data set. This file presents the list of studies surveyed for LitRev. (XLSX 27 kb)
DOI: 10.7284/118625
title: Multibeam Echosounder data collected during research cruise AT29-03 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118628
title: Radiometer data collected during research cruise AT29-03 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118629
title: Radiometer data collected during research cruise AT29-03 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118641
title: Multiplexed data collected during research cruise AT29-04 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118634
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT29-04 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118635
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AT29-04 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118633
title: Expendable Probe data collected during research cruise AT29-04 using a Sippican MK12 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118632
title: Fluorometer data collected during research cruise AT29-04 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118631
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT29-04 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118637
title: Meteorological Station data collected during research cruise AT29-04 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7698788
title: Additional file 3: of Characterization of immune responses to anti-PD-1 mono and combination immunotherapy in hematopoietic humanized mice implanted with tumor xenografts

description: Table S2. Flow Cytometric Abs and Reagents. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.7698788.v1
title: Additional file 3: of Characterization of immune responses to anti-PD-1 mono and combination immunotherapy in hematopoietic humanized mice implanted with tumor xenografts

description: Table S2. Flow Cytometric Abs and Reagents. (XLSX 49 kb)
DOI: 10.7284/118638
title: Meteorological Station data collected during research cruise AT29-04 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118636
title: Multibeam Echosounder data collected during research cruise AT29-04 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118639
title: Radiometer data collected during research cruise AT29-04 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition