cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17034674
title: Re-identification Challenge Dataset

description: # Re-identification Challenge Dataset

This dataset was generated and anonymized for the Re-identification Challenge launched under the European Project ChAImeleon. The challenge aimed to evaluate the robustness of anonymization methods applied to DICOM medical images by allowing participants to attempt re-identification of these data.

The dataset is provided in compressed format (.zip) and contains DICOM files organized as they were released to the challenge participants. No additional metadata has been included beyond what was originally provided.

## UsageThis dataset is made available in accordance with the principles of transparency and reproducibility promoted by the journal. It is released under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, which permits reuse and redistribution provided that appropriate credit is given.  

** Responsible Use Notice**: The dataset may be used for academic and research purposes, particularly in the areas of medical image anonymization, data privacy, and robustness evaluation of de-identification methods. Any attempt to use this dataset for the re-identification of individuals, or for commercial purposes, is strictly prohibited. 

## CitationDataset DOI: 10.5281/zenodo.17034674

If you use this dataset, please cite the following article:Catalán Flores R, Gómez-Rico Junquero I, Jiménez Gómez P, Gomes Carvalho J, Mazzetti S, Martínez Martínez R, Segrelles Quilis JD, Lozano Lloret P, Galiana-Bordera A, Bargellini I, Regge D, França M, Martí-Bonmatí L. "From Theory to Practice: Re-identification Challenge to Test Imaging Data De-identification Effectiveness". [In review]. The DOI will be added here once available.
DOI: 10.5281/zenodo.17034673
title: Re-identification Challenge Dataset

description: # Re-identification Challenge Dataset

This dataset was generated and anonymized for the Re-identification Challenge launched under the European Project ChAImeleon. The challenge aimed to evaluate the robustness of anonymization methods applied to DICOM medical images by allowing participants to attempt re-identification of these data.

The dataset is provided in compressed format (.zip) and contains DICOM files organized as they were released to the challenge participants. No additional metadata has been included beyond what was originally provided.

## UsageThis dataset is made available in accordance with the principles of transparency and reproducibility promoted by the journal. It is released under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, which permits reuse and redistribution provided that appropriate credit is given.  

** Responsible Use Notice**: The dataset may be used for academic and research purposes, particularly in the areas of medical image anonymization, data privacy, and robustness evaluation of de-identification methods. Any attempt to use this dataset for the re-identification of individuals, or for commercial purposes, is strictly prohibited. 

## CitationDataset DOI: 10.5281/zenodo.17034674

If you use this dataset, please cite the following article:Catalán Flores R, Gómez-Rico Junquero I, Jiménez Gómez P, Gomes Carvalho J, Mazzetti S, Martínez Martínez R, Segrelles Quilis JD, Lozano Lloret P, Galiana-Bordera A, Bargellini I, Regge D, França M, Martí-Bonmatí L. "From Theory to Practice: Re-identification Challenge to Test Imaging Data De-identification Effectiveness". [In review]. The DOI will be added here once available.
DOI: 10.15468/dl.urwvhq
title: Occurrence Download

description: A dataset containing 283737 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((10.5221 55.81171,10.52967 55.78432,10.54337 55.77026,10.55526 55.76449,10.56896 55.76738,10.58878 55.76665,10.6223 55.76233,10.62843 55.77458,10.63636 55.78107,10.64176 55.78936,10.64897 55.80847,10.63996 55.82108,10.64068 55.83045,10.64969 55.84739,10.66591 55.86181,10.68141 55.8683,10.68069 55.87695,10.67853 55.89209,10.64357 55.87839,10.63131 55.8856,10.62915 55.89461,10.62014 55.89569,10.61473 55.90614,10.62086 55.91047,10.6551 55.91299,10.65294 55.9202,10.62987 55.92705,10.6187 55.92705,10.60897 55.93065,10.58482 55.94543,10.574 55.96237,10.56247 56.0049,10.51489 55.98039,10.51958 55.95588,10.53219 55.93642,10.55562 55.93462,10.57292 55.93065,10.5877 55.92416,10.59707 55.90939,10.59347 55.89461,10.58734 55.87803,10.57761 55.86722,10.55814 55.86722,10.54517 55.86722,10.53724 55.86001,10.52534 55.8528,10.5221 55.81171))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 283737 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019332-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30032209
title: Environmental DNA (eDNA) sampling strategies influence estimates of freshwater fish eDNA concentrations.

description: Quantifying <i>in-situ</i> environmental DNA (eDNA) concentrations is increasingly used to infer fish abundance and biomass in freshwater ecosystems. While various sampling strategies (i.e. the combination of sample collection, eDNA preservation and extraction protocols) have been proposed to collect eDNA, little efforts have been undertaken to evaluate how these different strategies affect taxon-specific eDNA recovery and the subsequent estimates of <i>in-situ</i> eDNA concentrations. In this study, we compared a point (i.e. eDNA collection from relatively small and spatially separated water samples filtered using low capacity filter units) and a spatially integrated sampling strategy (i.e. eDNA collected from spatially integrated larger water volumes filtered using high capacity filter units) in two natural lakes. Through quantitative analyses of total DNA, total fish eDNA and species-specific eDNA, we assessed the performance of both strategies to infer <i>in-situ</i> eDNA concentrations. Our results showed that the integrated strategy led to a reduced recovery of fish eDNA and a subsequent underestimation of <i>in-situ</i> eDNA concentrations compared to the point sampling strategy. While the exact mechanisms underlying this pattern require further investigation, our findings highlight the importance of carefully selecting sampling strategies according to study objectives.
DOI: 10.6084/m9.figshare.30032209.v1
title: Environmental DNA (eDNA) sampling strategies influence estimates of freshwater fish eDNA concentrations.

description: Quantifying <i>in-situ</i> environmental DNA (eDNA) concentrations is increasingly used to infer fish abundance and biomass in freshwater ecosystems. While various sampling strategies (i.e. the combination of sample collection, eDNA preservation and extraction protocols) have been proposed to collect eDNA, little efforts have been undertaken to evaluate how these different strategies affect taxon-specific eDNA recovery and the subsequent estimates of <i>in-situ</i> eDNA concentrations. In this study, we compared a point (i.e. eDNA collection from relatively small and spatially separated water samples filtered using low capacity filter units) and a spatially integrated sampling strategy (i.e. eDNA collected from spatially integrated larger water volumes filtered using high capacity filter units) in two natural lakes. Through quantitative analyses of total DNA, total fish eDNA and species-specific eDNA, we assessed the performance of both strategies to infer <i>in-situ</i> eDNA concentrations. Our results showed that the integrated strategy led to a reduced recovery of fish eDNA and a subsequent underestimation of <i>in-situ</i> eDNA concentrations compared to the point sampling strategy. While the exact mechanisms underlying this pattern require further investigation, our findings highlight the importance of carefully selecting sampling strategies according to study objectives.
DOI: 10.6084/m9.figshare.30032209.v2
title: Environmental DNA (eDNA) sampling strategies influence estimates of freshwater fish eDNA concentrations.

description: Quantifying <i>in-situ</i> environmental DNA (eDNA) concentrations is increasingly used to infer fish abundance and biomass in freshwater ecosystems. While various sampling strategies (i.e. the combination of sample collection, eDNA preservation and extraction protocols) have been proposed to collect eDNA, little efforts have been undertaken to evaluate how these different strategies affect taxon-specific eDNA recovery and the subsequent estimates of <i>in-situ</i> eDNA concentrations. In this study, we compared a point (i.e. eDNA collection from relatively small and spatially separated water samples filtered using low capacity filter units) and a spatially integrated sampling strategy (i.e. eDNA collected from spatially integrated larger water volumes filtered using high capacity filter units) in two natural lakes. Through quantitative analyses of total DNA, total fish eDNA and species-specific eDNA, we assessed the performance of both strategies to infer <i>in-situ</i> eDNA concentrations. Our results showed that the integrated strategy led to a reduced recovery of fish eDNA and a subsequent underestimation of <i>in-situ</i> eDNA concentrations compared to the point sampling strategy. While the exact mechanisms underlying this pattern require further investigation, our findings highlight the importance of carefully selecting sampling strategies according to study objectives.
DOI: 10.15468/dl.kqncz8
title: Occurrence Download

description: A dataset containing 1261666 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "OccurrenceStatus is Present",
 "Year 2015-2025"
 ]
}

 The dataset includes 1261666 records from 313 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019355-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/oox2ir
title: Replication Data for: Transect-rapport 5483: Westenschouwen, Westerseweg 3-008 Gemeente Schouwen-Duiveland (Z) Archeologisch bureauonderzoek (BO) en inventariserend Veldonderzoek (IVO), verkennende fase

description: Uit het bureauonderzoek blijkt dat het plangebied zich in een vlakte van getij-afzettingen bevindt, 
nabij een gebied met Jonge Duinen. Het plangebied heeft in ieder geval tot circa 1500 v.Chr. in zee 
gelegen. Er is daarom geen verwachting op archeologische resten uit de periode Paleolithicum –
Bronstijd, aangezien deze door de zee zullen zijn verspoeld. In de IJzertijd – Vroege Middeleeuwen lag 
het plangebied echter in een veengebied, dat mogelijk plaatselijk bewoonbaar was door de 
ontwatering van het gebied door kreekgeulen. Uit geologische boringen nabij het plangebied blijkt 
echter dat de ondergrond uit getijdeafzettingen van zand bestaat tot relatief grote diepte (dieper dan 
400 cm -Mv). De aanwezigheid van een dik zandpakket wijst op hoge stroomsnelheden, waardoor het 
aannemelijk is dat er erosie van het veen heeft plaatsgevonden. Eventuele archeologische resten uit 
de periode IJzertijd – Vroege Middeleeuwen zijn daarom hoogstwaarschijnlijk geërodeerd. De 
archeologische verwachting voor de periode IJzertijd – Vroege Middeleeuwen is daarom laag. Voor de 
periode Late Middeleeuwen – Nieuwe tijd (tot de 17de eeuw) is sprake van een archeologische waarde. 
Het plangebied ligt binnen een zone waar een vliedberg of motte heeft gestaan. De verhoging zelf is 
reeds geheel afgegraven, maar van omringende structuren kunnen nog wel resten aanwezig zijn. Er is 
bijvoorbeeld bij eerder onderzoek vastgesteld dat er nog een gracht rondom de verhoging te 
verwachten is en er zijn resten van een voorburcht aangetroffen. Voor de periode Nieuwe tijd (vanaf 
de 17de eeuw) geldt een lage archeologische verwachting. Op topografische kaarten vanaf de 17de
eeuw zijn in het plangebied geen structuren of gebouwen te herkennen. Het plangebied is in deze 
periode in gebruik als agrarisch land.
DOI: 10.25976/ga1a-pb62
title: Goldboro Gold Mines Ocean Lake Narrows Water Quality Data

description: Water quality data collected on behalf of NexGold Mining Corp (formerly Signal Gold) in support of the development of the Goldboro Gold Mines near Goldboro, Guysborough County, Nova Scotia.
https://gazette.gc.ca/rp-pr/p2/2025/2025-07-02/html/sor-dors138-eng.html
description: Field parameters were measured with a YSI or Horiba. Laboratory analyses were conducted at Bureau Veritas. One location was sampled at Ocean Lake Narrows.
DOI: 10.15468/dl.zx786b
title: Occurrence Download

description: A dataset containing 181 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scorzonera hispanica",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 181 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019388-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.db7drx
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scorzonera hispanica",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019386-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sr7njp
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calappa pustulosa"
 ]
}

 The dataset includes 33 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019387-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2pd1jp
title: CCDC 2484232: Experimental Crystal Structure Determination

description: Related Article: Zhao Hong-Fei|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17026/ar/cwrewx
title: Replication Data for: Transect-rapport 5938: Molenschot, Kapelstraat naast 14. Gemeente Gilze en Rijen (NB) Een inventariserend veldonderzoek d.m.v. proefsleuven, karterende en waarderende fase

description: Tijdens het veldwerk zijn zes sporen aangetroffen. Twee daarvan zijn geïnterpreteerd als natuurlijk. 
Eén spoor is vervallen. Aan weerszijde van de put zijn twee greppels aangetroffen met een noord-zuid 
oriëntatie. In het midden van de werkput is een recente kuil aangetroffen. In totaal zijn er zes 
vondsten gedaan. Deze komen uit de greppels en de recente kuil. Deze zijn allen tot de Laat Nieuwe 
Tijd te dateren.
In de proefsleuf zijn twee greppels aangetroffen. Deze zijn echter niet terug te vinden op het historisch 
kaartmateriaal. Op basis van het vondstmateriaal en de coupes van spoor 2 en 3 zijn de greppels tot de 
Laat Nieuwe Tijd te rekenen. De gespecificeerde archeologische verwachting voor de Nieuwe Tijd 
omvat onder andere verkavelingsstructuren en greppels. Ondanks dat de greppels niet direct aan de 
verkaveling van het landschap zijn toe te kennen zijn deze greppels vanuit de archeologische 
verwachting beoordeeld als vindplaats
DOI: 10.15468/dl.akkh3u
title: Occurrence Download

description: A dataset containing 38700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lepidosperma laterale"
 ]
}

 The dataset includes 38700 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019389-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25387/g3.29948891
title: Supplemental Material for Baalsrud <i>et al</i>., 2025

description: Scripts and datafiles used to produce results presented in “Calcium starvation leads to strain-specific gene regulation of lipid and carotenoid production in Mucor Circinelloides ”
 
Mucor circinelloides strains have been the following abbreviations in all analyses
MucCirc1: FRR5020
MucCirc2: VI04473
MucCirc3: MU402
 
Differential expression results are based on RNA-seq data from two experiments (see paper for more information)
Experiment 1: Calcium and Phosphate
Experiment 2: Calcium
DOI: 10.25387/g3.29948891.v1
title: Supplemental Material for Baalsrud <i>et al</i>., 2025

description: Scripts and datafiles used to produce results presented in “Calcium starvation leads to strain-specific gene regulation of lipid and carotenoid production in Mucor Circinelloides ”
 
Mucor circinelloides strains have been the following abbreviations in all analyses
MucCirc1: FRR5020
MucCirc2: VI04473
MucCirc3: MU402
 
Differential expression results are based on RNA-seq data from two experiments (see paper for more information)
Experiment 1: Calcium and Phosphate
Experiment 2: Calcium
DOI: 10.6084/m9.figshare.30032008
title: Statement Coverage for Defects4J

description: The complete statement-level coverage for the 395 faults of Defects4J v1.2.0, as collected by GZoltar v1.7.3, with fault locations marked.To generate the spectrum-based fault localization rankings for these faults, run FLITSR.
DOI: 10.6084/m9.figshare.30032008.v1
title: Statement Coverage for Defects4J

description: The complete statement-level coverage for the 395 faults of Defects4J v1.2.0, as collected by GZoltar v1.7.3, with fault locations marked.To generate the spectrum-based fault localization rankings for these faults, run FLITSR.
DOI: 10.15468/qwjw7w
title: Herbarium Dresdense

description: With around 500,000 specimens, the Herbarium Dresdense (DR) at TU Dresden is the largest herbarium in Saxony, Germany. Founded in the 1820s, the collection contains specimens from all over the world, with a particular focus on Europe and Saxony. The majority of the collection consists of vascular plants, supplemented by significant collections of mosses and lichens. Notable historical collections include the Potentilla collection of Theodor Wolf, the 18th-century Herbarium Barbiense, and collections of Heinrich Gustav Reichenbach, Oscar Drude, and many other local and international collectors from the 19th and 20th centuries. In recent years, the collection has grown steadily through field research (e.g. Germany, Angola, Vietnam, Central America).
DOI: 10.15468/dl.66msn2
title: Occurrence Download

description: A dataset containing 2835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-210.0",
 "Country is Norway",
 "OccurrenceStatus is Present",
 "TaxonKey is Ranunculus glacialis",
 "Year 2000-2025"
 ]
}

 The dataset includes 2835 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019392-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pk42eg
title: Occurrence Download

description: A dataset containing 1588 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Japan, Chinese Taipei, Korea, Republic of, Philippines, Indonesia, Hong Kong)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aplysia"
 ]
}

 The dataset includes 1588 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019395-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66xk5q
title: Occurrence Download

description: A dataset containing 2640 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ulmus pumila",
 "Year 1000-2025"
 ]
}

 The dataset includes 2640 records from 195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019391-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/cdc.454
title: Chandra X-ray Observatory Chandra Data Collection for request #454

description: Chandra Data Collection for request #454
DOI: 10.15468/dl.hc6zw7
title: Occurrence Download

description: A dataset containing 74164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Carex elongata"
 ]
}

 The dataset includes 74164 records from 359 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019339-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17025135
title: Evaluating the Resilience of Obfuscated Code Against LLM-based Function Name Recovery in MATE Attacks

description: This repository serves as the online appendix for the paper "Evaluating the Resilience of Obfuscated Code Against LLM-based Function Name Recovery in MATE Attacks".

 

Abstract

In recent years, improvements in decompilers and large language models (LLMs) have made it possible to use powerful techniques for analyzing software binaries, including automated function name recovery. Such powerful binary analysis techniques can be exploited for Man-At-The-End (MATE) attacks, posing a serious threat to the software ecosystem. To protect software against MATE attacks, software obfuscation is widely used. However, it is not clear how effectively code obfuscation can prevent LLM-based MATE attacks, and thus a method for evaluating the resilience of obfuscated code against such attacks is required. This paper proposes a framework for evaluating the resilience of obfuscated code against LLM-based function name recovery MATE attacks. To construct the framework, resilience against the LLM-based function name recovery attack is characterized. The resilience is defined based on the morphological or semantic similarity between the original function name and the recovered function names. In the experiment, the resilience of five well-known obfuscation methods against LLM-based function name recovery attacks (i.e., how effectively these obfuscation methods prevent the prediction of appropriate function names) using the Gemma3-27B-IT LLM general-purpose model is evaluated. The results reveal that the obfuscation method based on code virtualization has the highest resilience, while some obfuscation methods have little resilience even with a general-purpose model. Furthermore, the analysis of high-resilience obfuscated code indicates that LLM-recovered function names for functions evaluated as high resilience are relatively less related to the implementation of the original functions. This paper makes two contributions: the development of a framework for evaluating the resilience of obfuscated code against LLM-based function name recovery MATE attacks, and an experimental evaluation of the resilience of existing obfuscation methods against such attacks.