cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0074223.10fu
title: SH0074223.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive6165.20251217.10
title: Devosia limi Vanparys et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6166.20250331.9.3
title: Devosia soli Yoo et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0074224.10fu
title: SH0074224.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive6166.20251217.10
title: Devosia soli Yoo et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0074225.10fu
title: SH0074225.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive6167.20250331.9.3
title: Devosia insulae Yoon et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6167.20251217.10
title: Devosia insulae Yoon et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0074226.10fu
title: SH0074226.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.17632/72x973vn44
title: Corpus of Turkish English Exam Scripts (TEES)

description: The Turkish English Exam Scripts  (TEES, hereafter) corpus is a learner corpus based on the exam scripts compiled by Akbas and Olcu-Dincer in 2019 at Erciyes University in Turkey for research purposes, which is expected to contribute to teaching plans and practices of L2 learners, especially  for the Turkish ones, both in local and international contexts. Not only can the examination of TEES provide us a better understanding of the interlanguage issues (i.e. grammar, vocabulary choice) but also it can allow the practitioners and researchers aiming to develop materials and design tasks for language classes by taking performances of L2 users.  The corpus includes ''136 exam scripts'' written by freshman Turkish speakers of English at tertiary level whose proficiency level ranges from intermediate to upper intermediate. 

The following 'rar file' includes all the texts with unique identification codes as well as two other subfolders: (1) Texts categorized by the exams (Midterm and Final) and (2) Texts categorized by the proficiency of learners in L2 Grammar class labelled as High Achievers, Mid Achievers, Low Achievers.

To exemplify, the unique identification code M_HA_001_053 for a text refers to a Midterm paper of a high achiever with unique informant number of 001. The last three digits (053) refer to the unique file number.
DOI: 10.17632/phy7fg5hzb
title: Data for: Effects of Laser Shock Peening on the Mechanisms of Fatigue Short Crack Initiation and Propagation of AA7075-T651
DOI: 10.17632/sgh3ft8g4k
title: Data for: The retention factors and partial molar volumes of ibuprofen at infinite dilution in supercritical carbon dioxide at T= (308.15, 313.15, 323.15, 333.15, 343.15 and 353.15) K

description: The partial molar volumes at infinite dilution in supercritical CO2
DOI: 10.17632/d3v4jytv7h
title: PROSPECTIVE STUDY ON HEALTH CARE SERVICES USE AND MEDICATION INTAKE

description: TWO FILES ON SPSS
DOI: 10.17632/3vwgpnw979
title: Datasets for YaliFunTome database

description: All the data and the metadata are also presented in the form of a searchable database YaliFunTome, to be found via the link: https://sparrow.up.poznan.pl/tsdatabase/
General:
The aim of this project was to examine the potential implications of transcription factors (TFs) identified in Yarrowia lipolytica genome in stress resistance and/or in the synthesis of heterologous proteins (recombinant proteins: r-Prots). The amount and potential of the data we gathered from completing experimental design inspired us to present them in the form of a searchable catalog.
This database can be used to characterize functional behavior of a specific TF across an array of conditions or to screen for TFs that were responsive to a specific combination of environmental factors in our studies.

Experimental setup:
In short: A collection of 125 Y. lipolytica strains over-expressing (OE) individually TFs was subjected to extensive phenotype screening under different environmental conditions, and the data processing was assisted by mathematical modeling. It was presumed that apart from genetic engineering of the TFs-encoding genes by their OE, implementation of the environmental perturbations will further manipulate the activation status of the TFs.

The search of the TFs within the Y. lipolytica genome and construction of the strains co-over-expressing (co-OE) individually one of 125 identified TFs and a reporter protein (RedStar2) was done previously, by our Colleagues: doi:10.1093/femsyr/foy037. Both genes were cloned under a constitutive promoter pTEF (more details can be found here: doi:10.1093/femsyr/fov052).
The TF co-OE strains were cultured under a combination of enviromental conditions. The experimental setup was designed using DoE (Design of Experiments; DesignExpert software; StatSoft)

Data presentation 
Each strain overexpressing an individual TF (TF-OE strain) was tested under an array of conditions, and so was the reference strain. Raw data for:
optical density at 600 nm wavelength as a proxy of growth,
fluorescence intensity from a reporter protein as a proxy of r-Prot synthesis,
are presented in a form of heat-maps of fold change (FC) of a given measure response in the TF-OE strain over the control strain (file RAW DATA YaliFunTome.xlsx).
The data were also processed according to the Response Surface Methodology to acquire models describing a behavior of a given read parameter within the range of investigated variables (Model Factor's Contributions.xlsx). The adopted data processing strategy enabled the evaluation of each specific variable's contribution to the response's variability (growth, amount of r-Prot) elicited by a given TF-OE strain. This evaluation is presented in Factor's Contribution tables indicating the dominant level of a variable (color-coded and as +1 or -1, according to the adopted coding system) and a percentage contribution of the variable to the response.
DOI: 10.17632/dz9w684x8p
title: Lipid and Metabolic Syndrome Traits in Coronary Artery Disease: A Mendelian Randomization Study

description: Harmonized effect sizes, standard error, and P-value for lipid traits at 343 distinct, genome-wide significant lipid trait SNPs (table_three-trait.txt) and lipid and metabolic syndrome traits at 1492 distinct, genome-wide significant lipid and metabolic syndrome trait SNPs (table_sixtrait.txt).
DOI: 10.17632/rgmm7bzj7d
title: fMRI Data from Complex Sequential Finger Tapping under Complete Motor and Sensory Blockade of the Right Hand

description: This dataset includes healthy people fMRI recordings of Complex Sequential Finger Tapping under Complete Motor and Sensory Blockade (Peripheral Nerve Block Anesthesia) of the Right Hand (n=13). Details of the participants are described in the publication of the study. The recordings performed at Akdeniz University Radiology Department, Antalya, Turkey.
DOI: 10.17632/tp3pts44ms
title: Video of a twisted yeildable bolt driving into a rock hole

description: This video shows the process of 23-degree twisted rock bolt (TYB) driving into a hole with 25 mm diameter.  TYBs were made of low-alloy steel of 09G2C grade having yield strength 325 MPa, tensile strength 470 MPa, elongation 21% and impact toughness 59 Дж/см3. Uniaxial tensile strength of the rock was 42.3±3.6 MPa and elasticity module 14 GPa. TYB cylindrical rode had diameter 20 mm. The rod had two feathers 3 mm high. The feathers cut the 0.5 grooves. A pneumatic hammer was used to drive the bolt. The hummer had a ring piston, inner channel and a clamp. The bolt was inserted into the channel and fixed with the clamp. The rod bolt was marked with a chalk every 10 cm.
DOI: 10.17632/d7prvnts2v
title: Hybridcats_Pongrácz_etal_2024

description: These data are from a survey, where Hungarian cat owners provided information about their cats' behavior, and shared pictures of the cats with the authors. Based on these photographs, we scored the resemblance of the cats with European wildcats, as a proxy of potential wildcat introgression.
DOI: 10.17632/572nyx5rbs
title: Data for: Local Search for Constrained Graph Clustering in Biological Networks

description: This work addresses a constrained graph clustering problem with applications on Protein-Protein Interaction (PPI) networks in cancer research. The method takes a subgraph of the PPI network as input and facilitates the identification of pathways in PPI networks, an important aid in identifying cancer driver genes from gene prioritization lists. Interaction graph G_i = (V, E_i) is an unweighted graph, where V represents a set of genes and E_i describes the interaction between each pair of genes. Two other weighted graphs express which pair of genes must or cannot be assigned to the same pathway: cannot-link graph G_c = (V, E_c) and must-link graph G_m = (V, E_m). The edges in E_c describe the penalty score for each pair of genes that should not be present in the same pathway, while the penalty for the pair which must belong to the same pathway is represented by E_m. The goal is to partition V into k groups such that each subset is a connected component in the interaction graph and the penalty of cannot-link and must-link constraint violation is minimized. There are three sets of instances: small-instance set (n &lt;= 300), medium-instance set (n &lt;= 2000) and large-instance set (n &gt; 10000). The set of small instances includes 54 real problem instances extracted from the HINT+HI2012 PPI network that belong to six different graph sizes: 50, 75, 100, 150, 200, and 300 nodes. The medium-instance set contains 60 synthetic problem instances having n in {500, 750, 1000, 1250, 1500, 2000}. An n-size interaction network is formed from the physical protein-protein interaction network for human [1] by taking n random connected nodes and transferring all incident edges. The set of large instances includes 102 synthetic problem instances using original graphs from a collection of species-specific protein-protein association networks [2] whose sizes are from 10,000 to 40,000 nodes. [1] R. Rossi, N. Ahmed, The Network Data Repository with Interactive Graph Analytics and Visualization, in Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence, 2015. [2] D. Szklarczyk, J. H. Morris, H. Cook, M. Kuhn, S. Wyder, M. Simonovic, A. Santos, N. T. Doncheva, A. Roth, P. Bork, et al., The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible, Nucleic Acids Research (2016).
DOI: 10.17632/rfsxsrchts
title: Physiochemical Properties of WRKY Transcription Factor Proteins of Grapes.

description: Although the function of a TF is determined by its tertiary structure, which is influenced by its amino acid sequence. A total 57 WRKY TF were identified in the plant. Biocomputational approaches used to analyze the physicochemical properties of WRKY transcription factor proteins of grapes. In order to characterize the physiochemical properties of TFs, six parameters have been selected: peptide length, Aromaticity, GRAVY, isoelectric point (pI), Molecular weight, and Instability Index. The physiochemical properties of peptide sequences open a new strategy for reagent design and also helps to develop a bioinformatics tool to guide peptide synthesis.
DOI: 10.17632/m2gy86fc2s
title: Role of condensed water in the solid state stability of enalapril maleate

description: The physicochemical stability of enalapril maleate was investigated in the presence of fourteen different excipients divided into four different classes. 
The attached files contain results that are divided into two chapters:
One) The extent of a drug-excipient interaction by following the chemical stability 
Two) Investigation of the water sorption characteristics of the excipients. 
The chemical stability of enalapril maleate was followed using HPLC. The water sorption characteristics of the excipients were examined from a humidity range of 0 to 90%RH. 
The resulting behavior was sectioned in layers by application of three models:  Brunauer-Emmet-Teller (BET), Guggenheim-Andersen-de Boer (GAB) and Young-Nelson models. 
The GAB-model was applied using the software Universal analysis software of TA instruments. The BET-constant was calculated and applied in Young-Nelson model 
where parameters were determined using a multiple regression technique.
DOI: 10.17632/jmmx3hctvs
title: LINF_040013400

description: Protein tyrosine phosphatase-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/crkjchmtx5
title: LiDAR intensity and turbidity dataset in water

description: Data series of measurements of the intensity of a LiDAR by means of the variation of the water level in a tank and turbidity are presented. The experiment consists of measuring the ability of a LiDAR Sick 2D LMS500-20000 PRO to scan the cross section of a tank, varying the water level and its turbidity. For this purpose, three types of clays were tested: white, green and red, which were used to induce the variation of turbidity in the water.
The dataset was curated and hosted by the Hydraulic Laboratory at the Universidad de Ibagué, in collaboration with researchers from the Electronic and Civil Engineering Department and the Faculty of Forestry Engineering at the Universidad del Tolima in Colombia. The data was generated under laboratory conditions during the period January to March 2023.
The purpose of creating this dataset is assess LiDAR's ability to scan wet cross sections under diferent turbidity conditions and levels of the water. The information can be useful for researchers in water resources and hydraulics instrumentation.
DOI: 10.17632/gv7dw2k7v6
title: Porewater_DOM_BYD_Data

description: This dataset “Porewater_DOM_BYD_Data”contains the original data of all the figures in the submitted article“Strong depth-dependent chemical and structural characteristics of dissolved organic matter (DOM) in sediment porewater in Baiyangdian Lake” .
DOI: 10.17632/hh5zjzjm5s
title: Computation of cross sections and polarizations for nuclear reactions, in which only spin 1 2 particles are involved

description: Title of program: S 1/2 PARTICLE CS AND POL Catalogue Id: ABGK_v1_0 Nature of problem Both for a phase shift analysis and for reaction calculations one needs to relate cross sections, polarization values etc. on the one hand and S-matrix elements in the usual lsJ representation on the other. For general cases this calculation requires great computational effort. For reactions in which only spin 1/2 particles are involved this effort can be considerably reduced, by the explicit calculation of the M-matrix. Versions of this program held in the CPC repository in Mendeley Data ABGK_v1_0; S 1/2 PARTICLE CS AND POL; 10.1016/0010-4655(72)90099-9 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/3pp465nfsz
title: Variables of the multidimensional indicator of intra-urban inequality: a longitudinal comparison of eight cities in the state of Paraná, Brazil

description: Principal component analysis (PCA) is a popular technique for building social indicators in the field of spatial analysis. However, literature shows that there is no consensus on how to apply PCA to longitudinal studies, and researchers have done the analysis using different approaches, varying the way data are combined and the frequency in which the data are sampled. This research explores such approaches with two objectives: to draw attention to the limitations of using PCA in longitudinal analyses, and to show how to overcome these limitations. For this purpose, indicators of urban inequality of eight cities are compared in each approach. The results show that the use of PCA presents limitations for the longitudinal study of urban inequality either because the evolution of the phenomenon is not always captured, or a large part of the indicators does not explain the phenomenon properly, or yet when a change in the calculation of the indicator distorts and enhances the differences in urban inequality through the years. An analytical chart is proposed to guide researchers with explanations and justifications that should accompany the use of PCA in longitudinal analyses. The variables collected for the intra-urban inequality indicator were collected from the 2000 and 2010 censuses (IBGE, 2000; 2010). The fourteen variables are associated with the dimensions of housing, demographics, economy and education. The selection of each variable was based on its theoretical relevance, precision of values, availability, continuity, ease of access, comprehensibility and conceptual coherence. The criteria for selecting these variables followed the recommendations contained in the Organisation for Economic Co-operation and Development's (OECD) Indicator Construction Manual (JRC-EC, 2008).
DOI: 10.17632/36gsbcjd2v
title: holiday traffic data

description: The table contains cities' codes, names, and flow scale indices. Each city has a unique code.
DOI: 10.15468/dl.mf9d2z
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Abies hidalgensis Debreczy, Rácz & Guízar"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001614-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/2ysyhzww6t
title: Green/WeakCoupling: Implementation of fully self-consistent finite-temperature many-body perturbation theory for molecules and solids

description: The accurate ab-initio simulation of molecules and periodic solids with diagrammatic perturbation theory is an important task in quantum chemistry, condensed matter physics, and materials science. In this article, we present the WeakCoupling module of the open-source software package Green, which implements fully self-consistent diagrammatic weak coupling simulations, capable of dealing with real materials in the finite-temperature formalism. The code is licensed under the permissive MIT license. We provide self-consistent GW (scGW) and self-consistent second-order Green's function perturbation theory (GF2) solvers, analysis tools, and post-processing methods. This paper summarizes the theoretical methods implemented and provides background, tutorials and practical instructions for running simulations.
DOI: 10.17632/fj7yz8mj62
title: Gold hyperenrichment in iron (oxyhydr)oxides via nanoparticle adsorption and coarsening

description: Data in the manuscript by Feng-Xia Huang et al. to be published by Geochimica et Cosmochimica Acta as "Gold hyperenrichment in iron (oxyhydr)oxides via nanoparticle adsorption and coarsening".
DOI: 10.17632/58wdbj7b3k
title: Impacts of freeze-thaw cycles on soil aggregate stability and phosphorus occurrence under different land uses

description: he comparison of soil aggregate content before and after freeze-thaw