cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22691140.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.25105940.v1
title: <b>Infection with mpox virus via the genital mucosae increases shedding and transmission in the multimammate rat (</b><b><i>Mastomys natalensis</i></b><b>)</b>

description: The 2022 mpox virus outbreak was sustained by human-to-human transmission, however it is currently unclear which factors lead to sustained transmission of mpox virus (MPXV). Here, we present <i>Mastomys natalensis</i> as a model for MPXV transmission after intraperitoneal, rectal, vaginal, aerosol, and transdermal inoculation with an early 2022 human outbreak isolate (Clade IIb). Virus shedding and tissue replication was route-dependent and occurred in the presence of self-resolving localized skin, lung, reproductive tract, or rectal lesions. Mucosal inoculation via rectal, vaginal and aerosol routes led to increased shedding, replication and a proinflammatory T-cell profile compared to skin inoculation. Contact transmission was higher from rectally inoculated animals. This suggests that transmission might be sustained by increased susceptibility of the anal and genital mucosae for infection and subsequent virus release.
DOI: 10.6084/m9.figshare.6241070.v3
title: TENS dataset for selective nerve stimulation

description: Set of files regarding a simulation environment for a transcutaneous electrical nerve stimulation (TENS) system.This set contains the following:- Files to create Matlab nerve models from a FEM of a human finger- Four main Matlab nerve models.- Matlab scripts to evaluate different stimulation cases for the modelled nerves.
DOI: 10.17632/hgh5gxyvcs
title: Factors influencing intention to teach Artificial Intelligence

description: To investigate sample data and assess model fit, this study employs structural equation modeling (SEM).
DOI: 10.17632/zz4mmbbmp9
title: FB2Droid：A Novel Malware Family Based Bagging Algorithm for Android Malware Detection

description: This dataset contains 8000 malware and 8000 benign Android applications
DOI: 10.6084/m9.figshare.28672310.v2
title: <b>Oligotrophic bacteria and pathotrophic fungi moderate multitrophic interactions in semi-arid and arid environments</b>

description: Future climate projections suggest shifts in intra-annual precipitation patterns, characterized by intensified rainfall events and prolonged dry periods. These changes are expected to reshape soil biotic communities and their interactions within food webs, particularly in semi-arid and arid ecosystems. However, the extent to which varying rainfall regimes and aridity influence multitrophic associations remains poorly understood. This study examines how rainfall variability and aridity shape soil multitrophic interactions among bacteria, fungi, protists, and nematodes in these ecosystems. Given that key trophic groups and keystone taxa play a crucial role in structuring soil food webs, we aim to identify the groups central to maintaining food web stability under fluctuating climatic conditions. The dataset includes environmental variables, soil properties, and plant data used in this research.
DOI: 10.17632/cdfdd6tpk6
title: Data on Growth, Survivality, Water quality and Hemato-biochemical Indices of Nile Tilapia Oreochromis niloticus Fry Fed with Selected Marine Microalgae

description: Data on Growth, Survivality, Water quality and Hemato-biochemical Indices of Nile Tilapia Oreochromis niloticus Fry Fed with Selected Marine Microalgae
DOI: 10.17632/d9g2242swc
title: Privacy in IoV

description: This dataset is associated with the journal article Privacy Concerns in the Disclosure of IoV Personal Driving Data
DOI: 10.17632/r9gzry9fzb
title: Development of the Physical Activity Counseling Practices Scale in health professionals: A validity and reliability study

description: Abstract
Purpose: It was planned to develop the Physical Activity Counseling Practices Scale (PACPS) in Turkish language among health professionals.
Materials and methods: Interviews were conducted with 20 health professionals (physician, physiotherapist, dietician, nursing) according to the distribution in the field. The 23-question item pool created after the interview was evaluated by academicians who are experts in the field. The pilot study was conducted with 10 participants. PACPS test-retest was applied to 162 health professionals (physician, physiotherapist, dietician, nurse) with a 1-week interval. Construct validity, correlations of PACPS with other scales were evaluated with the International Physical Activity Questionnaire short form (IPAQ), Conscious Behavioral Physical Activity Scale (CBAPS).
Results: The content validity index value of the scale was found to be 0.76. The overall internal consistency of the scale (Cronbach α: 0.91.7) was high. The item-total correlations of the scale are between 0.45 and 0.76. In the evaluation of the convergent validity of the PACPS, a positive correlation was found between PACPS and IPAQ and a negative correlation was found between CBPAQ (p&lt;0.001). The intraclass correlation coefficient value of the total PACPS is 0.88. The Turkish version of the PACPS has a two-factor structure with eigenvalues ranging from 1.32 to 6.82.
Conclusions: This study, it was determined that the PACPS scale has good internal consistency, test-retest validity and sufficient construct validity when compared with the IPAQ and CBAPS.
Keywords: Exercise, Counseling, Questionnaire, Scale,
DOI: 10.17632/rnf4m4dg58
title: Multimodal Immersion in English Language Learning in Higher Education: A Systematic Review

description: This systematic review examines 34 research articles published from 2013 to 2024. The primary focus of the study is to explore more about the application of multimodal pedagogies in higher education, the methods and materials used to assist learners in acquiring English language skills, the English language skills acquired through the usage of multimodality, and the main results of using many modes. This systematic review employs the Preferred Reporting Items for Systematic Reviews and Meta-analyses (PRISMA) standards. It adopts a thorough search strategy across electronic databases, which include Web of Science and Scopus.
DOI: 10.6084/m9.figshare.16429119.v1
title: Simulated transition path between the two high-moment states of a single-stranded chain of 15 equidimensional magnetosomes

description: Assumptions: 50 nm spherical magnetosomes with a saturation magnetization of 480 kA/m (magnetite) separated by 5 nm gaps.<br>Initial and final states: SD-like states with all magnetic moment parallel to the chain axis.<br>CSV data structure with magnetosomes numbered from 1 to 15 starting from one chain extremity. Magnetic moment directions are given in spherical coordinates with respect to the chain axis. Column 1: total energy normalized by kT, with T = 293 K. Columns 2-16: polar angles of the magnetic moments of individual magnetosomes (theta01, ..., theta15). Columns 17-31: azimuthal angles of the magnetic moments of individual magnetosomes (phi01, ..., phi15).
DOI: 10.6084/m9.figshare.22189873.v1
title: Maximum likelihood tree files

description: Maximum likelihood tree files
DOI: 10.6084/m9.figshare.27478209.v1
title: Strain identification_hospis.aln

description: This file contains sequence data used for colony identification. Identification was performed by sequencing PCR amplicons generated using the universal primer set 27F-1492R, with the sequencing carried out on a Sanger sequencer using the universal primer 341F. Three representative sequence results are provided for each strain.
DOI: 10.6084/m9.figshare.28738982.v1
title: Supplementary Material for: Usage of the Internet and Digital Health Among Urological Patients: Findings from a Cross-Sectional Study.

description: Introduction: The rising prevalence of internet usage and smartphone applications among urology patients underscores the critical role of digital health literacy. This study investigates the acceptability of digital health technologies among urology patients and identifies factors influencing their acceptance.
Materials and Methods: A cross-sectional, anonymous survey consisting of 12 questions was developed based on literature research. It was conducted online using SurveyMonkey and targeted patients in the CUROS network in Germany. The Data were analysed descriptively using SPSS.
Results: Of 1,039 participants, 99.1% reported using the internet, with 84.4% using it several times daily. YouTube emerged as the most popular social media platform. While 90.2% searched for health information online, trust in online resources was low (mean score 4.63). Only 35.2% used medical apps, but 62.8% expressed willingness to use them if prescribed. Furthermore, 74.2% supported the use of electronic patient records (EPRs), although concerns regarding privacy were noted.
Conclusions: Urology patients demonstrate a high engagement with digital resources but express concerns about the reliability of online health information. Enhancing education on digital health tools and fostering trust in these resources is essential for improving patient outcomes and encouraging the integration of digital health in urological care.
DOI: 10.6084/m9.figshare.3544112.v1
title: Appendix D. A table listing the main features of the "dbFD" function.

description: A table listing the main features of the "dbFD" function.
DOI: 10.17632/5kf3nyt26p
title: Cortisol

description: Complete data of cortisol levels and ethogram
DOI: 10.6084/m9.figshare.11859993.v1
title: Place Pulse

description: Place Pulse is a crowdsourcing effort that aims to map which areas of a city are perceived as safer, livelier, wealthier, more active, beautiful and friendly. By asking users to select images from a pair, Place Pulse collected more than 1.5 million reports that evaluate more than 100,000 images from 56 cities.The data has been cleaned by David Buil-Gil before releasing it to the public.
DOI: 10.6084/m9.figshare.20146844.v2
title: Constructing compact cities: How urban regeneration can enhance growth

description: This dataset includes many indexes of global cities. The variables of congestion level, skyscraper index, whether a city was bombed in WWII (World War II), and global cities’ population are key variables. (1) The congestion level data were collected from TOMTOM company. The congestion level data includes five indexes in 2004 which are “Congestion level”, “Morning peak Congestion level”, “Evening peak Congestion level”, “Highways Congestion level”, “Non-highways Congestion level”, and two indexes in 2020 which are “Time lost per year” and “Congestion level”. (2) The data of skyscraper index is calculated using the data of building height from the Council on Tall Buildings and Urban Habitat, from which we can obtain accurate data on the number of buildings taller than 150 m. With these data, we constructed an index of skyscrapers taller than 150 m in a city. A building receives a score of 1.5 if it is taller than 150 m and shorter than 200 m, 2.0 if it is between 200 m and 300 m, and so on. Then, we summed the scores for skyscrapers in the city as the “skyscraper index” of the city. (3) The data of whether a city was bombed in WWII is dummy variable, if the urban area of a city was bombed in WWII, it is 1, and 0 otherwise. The authors consulted various historical files and determined the value. (4) The data of global cities’ population, as well as the area and density of the city, are on the city-level, and were collected from the website of the cities or countries’ statistics department. These indicators are good measures of the level of congestion, urban spatial structure, instrumental variable (IV) for urban spatial structure, and urban population in global cities, and can be reused in other analysis.
DOI: 10.6084/m9.figshare.24311611.v1
title: Aridity creates global thresholds in soil nitrogen retention and availability

description: A total of 451 papers with 14144 observations were collected to identify tipping points in the relationship between aridity and gross N transformation rates across terrestrial ecosystems globally.
DOI: 10.6084/m9.figshare.6571730.v1
title: Result of Data analysis of RNA-Seq

description: FASTQ files for RCC4-EV cells (DRR100656) and RCC4-VHL cells (DRR100657) were obtained from the Sequence Read Archive (https://trace.ddbj.nig.ac.jp/dra/index_e.html). The quality of sequence data was evaluated by FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) after the trimming process by fastx_toolkit v 0.0.14 (http://hannonlab.cshl.edu/fastx_toolkit/). The human reference sequence file (hs37d5.fa) was downloaded from the 1000 genome ftp site (ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/phase2_reference_assembly_sequence/), and the annotated general feature format (gff) file was downloaded from the Illumina iGenome ftp site (ftp://igenome:G3nom3s4u@ussd-ftp.illumina.com/Homo_sapiens/NCBI/build37.2/). The human genome index was constructed with bowtie-build in Bowtie v.2.2.9. The fastq files were aligned to the reference genomic sequence by TopHat v.2.1.1 with default parameters. Bowtie2 v2.2.9 and Samtools v.1.3.1 was used with the TopHat program47. Estimation of transcript abundance was calculated, and the count values were normalized to the upper quartile of the fragments per kilobase of transcript per million fragments mapped reads (FPKM) using Cufflinks (cuffdiff) v2.1.1. cuffdiff output (gene_exp. diff) was presentated (gene_exp.diff.txt).
DOI: 10.17632/7b5kbhy3v9
title: Graspg – An extension to Grasp2018 based on configuration state function generators

description: The Graspg program package is an extension to Grasp2018 (Froese Fischer et al. (2019) [1]) based on configuration state function generators (CSFGs). The generators keep spin-angular integrations at a minimum and reduce substantially the execution time and the memory requirement for large-scale multiconfiguration Dirac-Hartree-Fock (MCDHF) and relativistic configuration interaction (CI) atomic structure calculations. The package includes the improvements reported in Li (2023) [8] in terms of redesigned and efficient constructions of direct and exchange potentials and Lagrange multipliers. In addition, further parallelization of the diagonalization procedure has been implemented. Tools have been developed for predicting configuration state functions (CSFs) that are unimportant and can be discarded for large MCDHF or CI calculations based on results from smaller calculations, thus providing efficient methods for a priori condensation. The package provides a seamless interoperability with Grasp2018. From extensive test runs and benchmarking, we have demonstrated reductions in the execution time and disk file sizes with factors of 37 and 98, respectively, for MCDHF calculations based on large orbital sets compared to corresponding Grasp2018 calculations. For CI calculations, reductions of the execution time with factors over 200 have been attained. With a sensible use of the new possibilities for a priori condensation, CI calculations with nominally hundreds of millions of CSFs can be handled.
DOI: 10.17632/n3crgsfbx4
title: Xing Xia_2025_GCA_Data

description: Raw data for all figures in the manuscript and supplementary material by Xing Xia, Yongyi Zhang, Haiwang Liu, Huaiyan Zhao, Guodong Fang, Jianjun Yang, and Xiangwei Wu to be published by Geochimica et Cosmochimica Acta as "Adsorption and oxidation of Mn(II) at the organo-ferrihydrite coprecipitate-water interfaces: Implications for Mn geochemical behavior and carbon stabilization".
DOI: 10.6084/m9.figshare.24570049.v3
title: ICESat-2 Bathymetry Retrievability Index

description: GeoTiff Files for ICESat-2 Retrievability Index datasets from the publication:<br><br>Dietrich J, Reese ARR, Gibbons A, Magruder LA, Parrish C. 2023. Analysis of ICESat-2 Data Acquisition Algorithm Parameter Enhancements to Improve Worldwide Bathymetric Coverage. ESS Open Archive (Preprint) DOI: 10.22541/essoar.169447414.45310708/v1All data are based on VIIRS KD490 Monthly Climatologies:NASA OB.DAAC. 2022. Visible and Infrared Imager/Radiometer Suite (VIIRS) Level-3 Mapped Downwelling Diffuse Attenuation Coefficient, Version 2022. DOI: 10.5067/NOAA-20/VIIRS/L3M/KD/2022File List:IS2_Retreivability_01_ETOPO - <i>ETOPO2022 30-arcsec raster from 1 to -41 m depth</i>IS2_Retreivability_02_Monthly_SecchiDepth_Jan_JunIS2_Retreivability_02_Monthly_SecchiDepth_Jul_Dec<br><i>- Monthly Secchi Depths Calculated for 532 nm, KD490 converted to KD532 &gt; Secchi Depth (See Linked Article)</i>IS2_Retreivability_03_ICESat2_RetreivabilityIndex<br><i>- </i><i>Final ICESAt-2 Bathymetric Retrievability Index Raster, </i><i>12-month average - number of visible months (0-12). Included are 1.25 Secchi depths (used in the paper), 1.1 Secchi depths, and 1.0 Secchi Depths</i><br>
DOI: 10.6084/m9.figshare.25754655.v1
title: Datasets for sediment source partitioning and budgeting: Fitzsimmons Creek Watershed, BC, Canada

description: The data repository includes the necessary shapefiles, raster datasets, and data tables to understand the detailed sediment budget (2014-2018), and historical sediment yield for the Fitzsimmons Creek Watershed, BC, Canada.The sediment budget data includes feature classes delineating the areas of interest (AOI) by landform (restricted to where significant change occurred based on fieldwork and preliminary morphometric change analysis), and summary tables of historical gravel removal, sedimentation in the run-of-river intake headpond, and net change lidar analysis for the 2014-2018 period. The DEM’s were first co-referenced and clipped to the area of interest, then a limit of detection was applied for gross measurements, and a DEM-based uncertainty analysis was performed. Additionally, the bed material fraction of sediment sources was estimated based on local grain size distribution estimates.The sediment yield (SY) data includes georeferenced historical air photos and UAV orthophotos from 1947 to 2023 with the topsets manually delineated, bathymetry rasters representing the paleolake and 2023 surfaces, and a 2023 DSM from the 2023 UAV survey. Finally, summary tables are provided for SY volumes, by period, for the delta and lake basin proximal to the delta.
DOI: 10.25909/29106086.v1
title: Canine heartworm hyperendemicity threshold Australia

description: This script was used to identify the temperature-dependent hyperendemicity threshold of <i>D. immitis</i> in Australia
DOI: 10.6084/m9.figshare.1187070.v1
title: lab2 ecology (grass-transect data )

description: In the research observer collected some data about a particular plant named “common Thistle “. In order to gather the data they have applied transect method (A straight line across the ground’s surface). Researcher have collected the distance of the each thistle on transect. In the next step, the height of each thistle has been determined in centimeter and later, the number of the leaves and flower of thistle plants have been observed. After all, the level of the crowding of the thistle plants was perceived whether it was good or poor.
DOI: 10.6084/m9.figshare.11919972.v1
title: Supplementary file 1: assembly and code from The Flexiscope: a low cost, flexible, convertible and modular microscope with automated scanning and micromanipulation

description: This folder contains Flexiscope assembly instructions, automated stage guidelines/code and 3D printed components.
DOI: 10.6084/m9.figshare.14983872.v2
title: Table S8 - Significant MG/MT Regression Model Results

description: Table reporting statistics from significant linear regression models between gene abundances and associated metadata.
DOI: 10.6084/m9.figshare.22600963.v1
title: Additional file 1 of Identification of alternative splicing events related to fatty liver formation in duck using full-length transcripts

description: Additional file 1.
DOI: 10.6084/m9.figshare.25107038.v1
title: AI-generated Peak Positive Emotional Stimuli Deactivate Maladaptive Schema

description: Early maladaptive schemas linked to depression are dysfunctional patterns of belief and behavior, acquired during hyperplastic critical periods of brain development. As a results they are typically highly resistant to change and require considerable therapeutic work. Recent evidence found that peak emotional experience can mitigate maladaptive schemas in depressed adults. This study examined whether AI-generated personalized clones of the peak emotional stimuli could selectively shift these engrained negative schemas. We exposed 182 healthy participants to 3 variants of the same peak stimulus: original, cloned, and a schema-specific clone targeting the Negativity Schema. All conditions evoked robust positive emotional shifts, demonstrating the reliability of the method to induce positive affect. Further, only the schema-specific stimulus significantly mitigated the targeted negativity schema and significantly outperformed other stimuli. Qualitative reports revealed its enhanced personal relevance. This suggests that AI-generated peak exposures can selectively modify stable maladaptive cognitions when content aligns with individual concerns. This novel approach holds promise for dismantling entrenched negative thinking patterns in depression.
DOI: 10.6084/m9.figshare.27185955.v1
title: Dataset of Witnessed Abusive Supervision

description: This is our dataset for Witnessed Abusive Supervision.
DOI: 10.6084/m9.figshare.28883489.v2
title: Parkinson_data.csv

description: The dataset comprises baseline chracteristic of Parkinson's disease patients (53) and healthy subject (47). A file, including tapping feature on finger tapping that extract by computer vision.The tapping signal:Tapping Score: rp_count, lp_countTapping Difference: tap_diffMean Tapping Amplitude: rp_mean, lp_meanTapping Variation: rp_std, lp_stdAmplitude Decrement 5: rp_diff5, lp_diff5Amplitude Decrement 10: rp_diff10, lp_diff10
DOI: 10.6084/m9.figshare.28916243.v1
title: Simulated Datasets for Power Analysis of the Manuscript Titled "The MCTOT App: A Publicly Available Tool for Statistical Cycle-to-Threshold Analysis and Inference of Informative but Uncertainly Determined qPCR Data"

description: The first dataset contains 20,000 samples, ordered by the gene variable, with all s-gene samples appearing first, followed by all n-gene samples. To construct replicates:The first replicate consists of the first 10 consecutive s-gene rows and the first 10 consecutive n-gene rows, stacked together to form a 20-sample block.The second replicate uses the next 10 s-gene rows and the next 10 n-gene rows, combined similarly.This process continues, pairing each successive block of 10 s-gene and 10 n-gene samples.Using this method, a total of 1,000 replicates (each with 20 samples) can be created from the dataset.The second dataset contains 24,000 samples, ordered by the dose variable, with all zero-dose samples appearing first, followed by all 240-dose samples. To construct replicates:The first replicate is formed by stacking the first 12 consecutive zero-dose rows with the first 12 consecutive 240-dose rows, creating a 24-sample block.The second replicate uses the next 12 zero-dose rows and the next 12 240-dose rows, combined in the same way.This process continues, pairing each successive block of 12 zero-dose and 12 240-dose samples.Following this method, 1,000 replicates—each containing 24 samples—can be generated from the dataset.