cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xgmhfz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phaethontiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((60 -90,90 -90,90 -60,60 -60,60 -90))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061992-250920141307145/datasets/export for details.
DOI: 10.15468/dl.wkgrbr
title: Occurrence Download

description: A dataset containing 1700 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bidens odorata"
 ]
}

 The dataset includes 1700 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061991-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/bwvb-7s44
title: NOAA/WDS Paleoclimatology - Kipfmueller fire data from Voyageurs Island West - IMPD USVIW001

description: Records of past fire occurrence from tree rings, charcoal found in lake sediments, and other proxies. Parameter keywords describe what was measured in this data set.  Additional summary information can be found in the abstracts of papers listed in the data set citations.  Additional information on the International Multiproxy Database (IMPD) data set procedures are also available.

description: 
This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: UW Platteville
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/usviw001.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/usviw001-noaa.txt
DOI: 10.25921/byhv-4t71
title: NOAA/WDS Paleoclimatology - Kaib fire data from Sierra Anchas, Center Peak - IMPD USCEN001

description: Records of past fire occurrence from tree rings, charcoal found in lake sediments, and other proxies. Parameter keywords describe what was measured in this data set.  Additional summary information can be found in the abstracts of papers listed in the data set citations.  Additional information on the International Multiproxy Database (IMPD) data set procedures are also available.

description: This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: Laboratory of Tree-Ring Research, University of Arizona
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/uscen001.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/uscen001-fhx-noaa.txt
DOI: 10.25921/be5m-te30
title: NOAA/WDS Paleoclimatology - Kipfmueller fire data from Crooked Lake Southeast - IMPD USCSE001

description: Records of past fire occurrence from tree rings, charcoal found in lake sediments, and other proxies. Parameter keywords describe what was measured in this data set.  Additional summary information can be found in the abstracts of papers listed in the data set citations.  Additional information on the International Multiproxy Database (IMPD) data set procedures are also available.

description: 
This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: UW Platteville
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/uscse001.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/uscse001-noaa.txt
DOI: 10.25921/bbxc-cy92
title: NOAA/WDS Paleoclimatology - Kipfmueller fire data from Gun Lake - IMPD USGNL001

description: Records of past fire occurrence from tree rings, charcoal found in lake sediments, and other proxies. Parameter keywords describe what was measured in this data set.  Additional summary information can be found in the abstracts of papers listed in the data set citations.  Additional information on the International Multiproxy Database (IMPD) data set procedures are also available.

description: 
This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: UW Platteville
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/usgnl001.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/usgnl001-noaa.txt
DOI: 10.25921/bfe4-p024
title: NOAA/WDS Paleoclimatology - North fire data from Jones Creek Riparian/upland - IMPD USJO_001

description: Fire is an important ecological process in many western U.S. coniferous forests, yet high fuel loads, rural home construction and other factors have encouraged the suppression of most wildfires. Using mechanical thinning and prescribed burning, land managers often try to reduce fuels in strategic areas with the highest fuel loads. Riparian forests, however, are often designated as areas where only limited management action can take place within a fixed-width zone. These highly productive forests have developed heavy fuel loads capable of supporting stand-replacing crown fires that can alter wildlife habitat and ecosystem function, and contribute to stream channel erosion. Objectives of this study were to determine whether adjacent coniferous riparian and upland forests burned historically with different frequencies and seasonalities, and whether these relationships varied by forest, site, and stream characteristics. We measured dendrochronological fire records in adjacent riparian and upland areas across a variety of forest, site and stream conditions at 36 sites in three sampling areas in the northern Sierra Nevada.  Riparian fire return intervals (FRI) ranged from 8.4 to 42.3 years under a liberal filter (mean 16.6), and 10.0 to 86.5 years under a conservative filter (mean 30.0). Upland FRI ranged from 6.1 to 58.0 years under a liberal filter (mean 16.9), and 10.0 to 56.3 years under a conservative filter (mean 27.8). Riparian and upland fire return intervals were significantly different in only one quarter of the sites we sampled. Riparian and upland areas did not burn with different seasonalities, and fire events occurred primarily during the late summer-early fall dormant season in both riparian and upland areas (88% and 79% of scars, respectively). FRI was shorter in forests with a higher proportion (>22.7-37.6%) of fire-tolerant pine(Pinus spp.), sites east of the Sierra crest, lower elevation sites (<1944 m), and riparian zones bordering narrower, more incised streams (width/depth ratio <6.2). Upland areas exhibited a greater degree of fire-climate synchrony than riparian areas. Our study suggests that Sierra Nevada coniferous riparian forests bordering many montane streams might be managed for fuel loads and fire return intervals similar to adjacent upland forests.
description: 
This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: 
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/usjo_001.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/usjo_001-fhx-noaa.txt
DOI: 10.15468/dl.4umx96
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solen cylindraceus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 19 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006197-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0450344
title: Experimental test of hybrid fitness change as a cause of species collapse following species invasion

description: With an experimental approach using mesocosms, we tested whether crayfish addition would alter the prey community structure in the environment, and whether this would change F1 hybrid fitness relative to pure Limnetic and Benthic threespine stickleback.
DOI: 10.14288/1.0450342
title: In mouse and in vitro models, bowel preparation promotes pathogen colonization, translocation and exacerbation of inflammation

description: In the United States an estimated 14 million colonoscopies are performed yearly, each requiring patients to undergo bowel preparation, a laxative cleansing of the intestine’s luminal contents. Despite its widespread use, the effects of bowel preparation on gut physiology and susceptibility to pathogens remains poorly understood, particularly in individuals with compromised gut health. Using mouse and in vitro models, we found that bowel preparation with the laxative polyethylene glycol (PEG) rapidly disrupts, transiently increasing susceptibility to infection by Salmonella Typhimurium, including a non-motile mutant, and by gut pathobionts derived from ulcerative colitis microbiota. Bowel preparation also facilitated bacterial translocation to extraintestinal sites (mesenteric lymph nodes, liver, and spleen) and exacerbated inflammation in a chemically-induced colitis model. Although these findings are preclinical, they suggest that bowel preparation may have underappreciated risks in vulnerable populations, and warrant further clinical investigation.
DOI: 10.14288/1.0450312
title: Image Analysis of Wildfire Smoke Particles in Kamloops, British Columbia, Summer 2021

description: This dataset contains transmission electron microscopy (TEM) images and associated MATLAB files used for image processing of smoke particles collected during forest fires in Kamloops, British Columbia, Canada, in July 2021. Samples were obtained at 1259 Dalhousie Dr, Kamloops, BC V2C 5Z5 (BC Ministry of Environment) using thermophoretic sampling during both daytime (22 Jul. 2021, starting 10:41 am, ~ 1.5 hours duration) and nighttime (21 Jul. 2021, starting 18:48 pm, ~ 9 hours duration) conditions. The TEM images reveal a range of particle types, including soot (both fresh and coated), tarballs, ash-like structures, organics, and newly observed “softball” particles. Processed MATLAB data are included to reproduce the automated image analysis presented at the American Association for Aerosol Research (AAAR) 2022 Conference. Image segmentation was performed using k-means clustering, followed by morphological characterization of particle circularity, optical depth, and boundary sharpness. These metrics support differentiation of particle types and highlight differences in morphology between day and night samples. The particles were also manually classified based on visual assessment of their types. This dataset may be useful for researchers working on biomass burning emissions, aerosol particle morphology, atmospheric aging processes, and automated image analysis methods.
DOI: 10.14288/1.0450319
title: Ultraconserved element (UCE) data for phylogenomic analysis and four-gene Sanger dataset for phylogenetic analysis of Phenasurya daeng (Salticidae, Plexippini, Plexippina)

description: We describe a new plexippine genus and species, Phenasurya daeng. Its placement within Plexippina is supported by ultraconserved element (UCE)-based phylogenomic analyses, supplemented with a broader four-gene analysis. The details of the specimens used in phylogenomic and phylogenetic analyses can be found in the published paper.
DOI: 10.5286/isis.e.rb2410580-2
title: Operando µSR of P2-type Layered Transition Metal Oxides for Sodium Ion Batteries
DOI: 10.14288/1.0450311
title: Raw data files for: A Binary Self-Amplifying Nucleic Acid Platform for the Creation of Lipid Nanoparticle-Free Vaccines and Nanomedicines

description: Raw data for Figures 1-9 and BioRender licenses for Figures 1-10
DOI: 10.15156/bio/sh1182077.10fu
title: SH1182077.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1182078.10fu
title: SH1182078.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1182081.10fu
title: SH1182081.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1182084.10fu
title: SH1182084.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1182090.10fu
title: SH1182090.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1182093.10fu
title: SH1182093.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1182095.10fu
title: SH1182095.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1182097.10fu
title: SH1182097.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1182099.10fu
title: SH1182099.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.