cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9485804
title: Rhamnella_rubrinervis_genome_data

description: <pre><code>Rhamnella_rubrinervis.genome.fa.gz ------------------------- The contig version genome assembly. </code></pre><pre><code><pre><code>Rhamnella_rubrinervis.genome.gff.gz ------------------------ Gene structure annotation of the contig version genome.</code></pre> <pre>Rhamnella_rubrinervis.genome.cds.gz ------------------------ The CDS file of all the genes.</pre>Rhamnella_rubrinervis.genome.pep.gz ------------------------ The protein sequence file of all the genes.</code></pre><pre><code>IPR.out.gz ------------------------------------------------- Gene functional annotation by Interproscan.<br></code></pre><pre><code>KEGG.out.gz ------------------------------------------------ Gene functional annotation by KEGG.<br></code></pre><pre><code>NR.out.gz -------------------------------------------------- Gene functional annotation by NR.<br></code></pre><pre><code>Swiss-Prot.out.gz ------------------------------------------ Gene functional annotation by Swiss-Prot.</code></pre><pre><code>TrEMBL.out.gz ---------------------------------------------- Gene functional annotation by TrEMBL.</code></pre><pre><code>All.repeat.annot.gff.gz ------------------------------------ The merged all repeat annoations.</code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.fa.gz --------------- The chromosome-level assembly.</code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.gene.gff.gz --------- </code>Anchored g<code>ene structure annotation of the chromosome-level assembly. </code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.gene.gff.cds.gz ----- Anchored CDS file.</code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.gene.gff.pep.gz --------- </code>Anchored protein file.</pre>
DOI: 10.6084/m9.figshare.9487892.v1
title: A High-Fat Diet Reverses Metabolic Disorders and Premature Aging by Modulating Insulin and IGF1 Signaling in SIRT6 Knockout Mice.zip

description: These data are the primary data of the paper "A High-Fat Diet Reverses Metabolic Disorders and Premature Aging by Modulating Insulin and IGF1 Signaling in SIRT6 Knockout Mice"<br>
DOI: 10.6084/m9.figshare.9485387
title: MOESM2 of Shaping the lipid composition of bacterial membranes for membrane protein production

description: Additional file 2. Relative quantifications of phospholipids (PE, PG, CL). The tables show the phospholipid assignations of the m/z peaks and the results of the statistical analyses.
DOI: 10.6084/m9.figshare.9485804.v1
title: Rhamnella_rubrinervis_genome_data

description: <pre><code>Rhamnella_rubrinervis.Chromosome.fa.gz ---------------------------- The chormosome version genome assembly. Rhamnella_rubrinervis.Contig.annotation.gff3.gz ------------------- The gene structure annotation of the contig version genome assembly. Rhamnella_rubrinervis.Chromosome.annotation.gff3.gz --------------- The gene structure annotation of the chormosome version genome assembly. Rhamnella_rubrinervis.genome.cds.gz ------------------------------- The CDS file of all the genes. Rhamnella_rubrinervis.genome.pep.gz ------------------------------- The protein sequence file of all the genes.</code></pre>
DOI: 10.6084/m9.figshare.9485387.v1
title: MOESM2 of Shaping the lipid composition of bacterial membranes for membrane protein production

description: Additional file 2. Relative quantifications of phospholipids (PE, PG, CL). The tables show the phospholipid assignations of the m/z peaks and the results of the statistical analyses.
DOI: 10.6084/m9.figshare.9485804.v2
title: Rhamnella_rubrinervis_genome_data

description: <pre><code>Rhamnella_rubrinervis.Chromosome.fa.gz --------------------- The chormosome version genome assembly. Rhamnella_rubrinervis.Contig.annotation.gff3.gz ------------ The gene structure annotation of the contig version genome assembly. Rhamnella_rubrinervis.Chromosome.annotation.gff3.gz -------- The gene structure annotation of the chormosome version genome assembly. Rhamnella_rubrinervis.genome.cds.gz ------------------------ The CDS file of all the genes. Rhamnella_rubrinervis.genome.pep.gz ------------------------ The protein sequence file of all the genes.</code></pre><pre><code>All.repeat.annot.gff.gz ------------------------------------ The merged all repeat annoations.</code></pre><pre><code>Figure.5.enrichment.GO.table.xlsx -------------------------- The gene function enrichment file of each clusters.</code></pre>
DOI: 10.6084/m9.figshare.9485804.v3
title: Rhamnella_rubrinervis_genome_data

description: <pre><code>Rhamnella_rubrinervis.Contig.annotation.gff3.gz ------------ The gene structure annotation of the contig version genome assembly. Rhamnella_rubrinervis.genome.cds.gz ------------------------ The CDS file of all the genes. Rhamnella_rubrinervis.genome.pep.gz ------------------------ The protein sequence file of all the genes.</code></pre><pre><code>All.repeat.annot.gff.gz ------------------------------------ The merged all repeat annoations.</code></pre><pre><code>Figure.5.enrichment.GO.table.xlsx -------------------------- The gene function enrichment file of each clusters.</code></pre>
DOI: 10.6084/m9.figshare.9485804.v5
title: Rhamnella_rubrinervis_genome_data

description: <pre><code>Rhamnella_rubrinervis.genome.fa.gz ------------------------- The contig version genome assembly. </code></pre><pre><code><pre><code>Rhamnella_rubrinervis.genome.gff.gz ------------------------ Gene structure annotation of the contig version genome.</code></pre> <pre>Rhamnella_rubrinervis.genome.cds.gz ------------------------ The CDS file of all the genes.</pre>Rhamnella_rubrinervis.genome.pep.gz ------------------------ The protein sequence file of all the genes.</code></pre><pre><code>IPR.out.gz ------------------------------------------------- Gene functional annotation by Interproscan.<br></code></pre><pre><code>KEGG.out.gz ------------------------------------------------ Gene functional annotation by KEGG.<br></code></pre><pre><code>NR.out.gz -------------------------------------------------- Gene functional annotation by NR.<br></code></pre><pre><code>Swiss-Prot.out.gz ------------------------------------------ Gene functional annotation by Swiss-Prot.</code></pre><pre><code>TrEMBL.out.gz ---------------------------------------------- Gene functional annotation by TrEMBL.</code></pre><pre><code>All.repeat.annot.gff.gz ------------------------------------ The merged all repeat annoations.</code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.fa.gz --------------- The chromosome-level assembly.</code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.gene.gff.gz --------- </code>Anchored g<code>ene structure annotation of the chromosome-level assembly. </code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.gene.gff.cds.gz ----- Anchored CDS file.</code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.gene.gff.pep.gz --------- </code>Anchored protein file.</pre>
DOI: 10.6084/m9.figshare.9485804.v4
title: Rhamnella_rubrinervis_genome_data

description: <pre><code>Rhamnella_rubrinervis.genome.fa.gz ------------------------- The contig version genome assembly. </code></pre><pre><code><pre><code>Rhamnella_rubrinervis.genome.gff.gz ------------------------ Gene structure annotation of the contig version genome.</code></pre> <pre>Rhamnella_rubrinervis.genome.cds.gz ------------------------ The CDS file of all the genes.</pre>Rhamnella_rubrinervis.genome.pep.gz ------------------------ The protein sequence file of all the genes.</code></pre><pre><code>All.repeat.annot.gff.gz ------------------------------------ The merged all repeat annoations.</code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.fa.gz --------------- The chromosome-level assembly.</code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.gene.gff.gz --------- </code>Anchored g<code>ene structure annotation of the chromosome-level assembly. </code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.gene.gff.cds.gz ----- Anchored CDS file.</code></pre><pre><code>Rhamnella_rubrinervis.final.chromosome.gene.gff.pep.gz --------- </code>Anchored protein file.</pre>
DOI: 10.6084/m9.figshare.9473852
title: Data for second gyrofrequency power ramp and maximum available power

description: Dataset contains wavefiles for 2nd gyrofrequency power ramp and maximum available power experiments. All the wavefiles are sampled at 500 kHz
DOI: 10.6084/m9.figshare.9475445
title: Data for third gyrofrequency maximum available power

description: Dataset contains wavefiles for 3rd gyrofrequency maximum available power experiments conducted in September 2017.
DOI: 10.6084/m9.figshare.9472334
title: Dataset - Influences of a luck game on offers in Ultimatum and Dictator games - Matarazzo et al.

description: Dataset of the study "Influences of a luck game on offers in Ultimatum and Dictator games: is there a mediation of emotions?"<br>
DOI: 10.6084/m9.figshare.9468512
title: Democratizing AI: Non-expert design of prediction tasks

description: Datasets supporting the paper, "Democratizing AI: Non-expert design of prediction tasks".
DOI: 10.6084/m9.figshare.9468512.v1
title: Democratizing AI: Non-expert design of prediction tasks

description: Datasets supporting the paper, "Democratizing AI: Non-expert design of prediction tasks".
DOI: 10.6084/m9.figshare.9467144
title: Fastq files

description: The project contains the fastq files (in a gzipped format) from simulated RNA-seq data for 12 paired-ended samples (i.e., biological replicates); all reads are 101 base pairs long.The first subscript denotes the sample id (1 to 12), while the second subscript indicates the two strands of each sample (1 or 2).Samples belong to two groups: samples 1 to 6 constitute the first group, while samples 7 to 12 represent the second group.In each group 1,000 genes exhibit differential transcript usage (DTU) and further 1,000 genes (partially overlapping with the previous set) shows differential gene expression (DGE) between groups.<br>Genes showing DTU were simulated by randomly permuting the relative abundance of the four most expressed transcripts; for gene with two or three transcripts only, all transcripts relative abundances were permuted.<br>The dataset is used to benchmark DTU methods in the manuscript entitled "BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty".<br>The code for simulating the data is available on GitHub at https://github.com/SimoneTiberi/BANDITS_manuscript .
DOI: 10.6084/m9.figshare.9466577
title: Data Repository Keto PCR.xlsx

description: GABA and Glutamate-related gene expression in dentate gyrus, CA1 and CA3.
DOI: 10.6084/m9.figshare.9466553
title: Table S7. Detection of statistically significant regulations compared to initial condition during AR-50 and BR-50

description: See details in manuscript<br>
DOI: 10.6084/m9.figshare.9466538
title: PCP-on-Web External Extracted Data (DBpedia, Wikidata and Deutsch NationalBibliothek) Scholar KB datasets

description: Contains KB datasets extracted from external PCP-on-Web data sources
DOI: 10.6084/m9.figshare.9466571.v1
title: Reconstructing draft genomes using genome-resolved meta- genomics to decipher fresh water lake microbial characteristics - Supplementary Data

description: Supplementary information<br>
DOI: 10.6084/m9.figshare.9467144.v2
title: Fastq files

description: Fastq files for the simulated data.
DOI: 10.6084/m9.figshare.9466538.v1
title: PCP-on-Web External Extracted Data (DBpedia Wikidata) Scholar KB datasets

description: Contains KB datasets extracted from external PCP-on-Web data sources
DOI: 10.6084/m9.figshare.9466553.v1
title: Table S7. Detection of statistically significant regulations compared to initial condition during AR-50 and BR-50

description: See details in manuscript<br>
DOI: 10.6084/m9.figshare.9466571.v2
title: Reconstructing draft genomes using genome-resolved meta- genomics to decipher fresh water lake microbial characteristics - Supplementary Data

description: Supplementary information<br>
DOI: 10.6084/m9.figshare.9467144.v3
title: Fastq files

description: Fastq files for the simulated data.
DOI: 10.6084/m9.figshare.9466523
title: Table S6. Classification of transcripts into impulse and sustained patterns by ImpulseDE2

description: See manuscript for details<br>
DOI: 10.6084/m9.figshare.9466538.v2
title: PCP-on-Web External Extracted Data (DBpedia Wikidata) Scholar KB datasets

description: Contains KB datasets extracted from external PCP-on-Web data sources
DOI: 10.6084/m9.figshare.9466553.v3
title: Table S7. Detection of statistically significant regulations compared to initial condition during AR-50 and BR-50

description: See details in manuscript<br>
DOI: 10.6084/m9.figshare.9466517
title: Table S5. Annotations of the sequences strongly graded in the Hydra gastric region

description: See manuscript for details<br>
DOI: 10.6084/m9.figshare.9466553.v2
title: Table S7. Detection of statistically significant regulations compared to initial condition during AR-50 and BR-50

description: See details in manuscript<br>
DOI: 10.6084/m9.figshare.9467144.v4
title: Fastq files

description: Fastq files for the simulated data.
DOI: 10.6084/m9.figshare.9466514
title: Table S4. Gene ontology analysis of stem cells corresponding to clustered genes in homeostatic conditions

description: See manuscript for details<br>
DOI: 10.6084/m9.figshare.9466517.v1
title: Table S5. Annotations of the sequences strongly graded in the Hydra gastric region

description: See manuscript for details<br>
DOI: 10.6084/m9.figshare.9467144.v6
title: Fastq files

description: The project contains the fastq files (in a gzipped format) from simulated RNA-seq data for 12 paired-ended samples (i.e., biological replicates); all reads are 101 base pairs long.The first subscript denotes the sample id (1 to 12), while the second subscript indicates the two strands of each sample (1 or 2).Samples belong to two groups: samples 1 to 6 constitute the first group, while samples 7 to 12 represent the second group.In each group 1,000 genes exhibit differential transcript usage (DTU) and further 1,000 genes (partially overlapping with the previous set) shows differential gene expression (DGE) between groups.<br>Genes showing DTU were simulated by randomly permuting the relative abundance of the four most expressed transcripts; for gene with two or three transcripts only, all transcripts relative abundances were permuted.<br>The dataset is used to benchmark DTU methods in the manuscript entitled "BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty".<br>The code for simulating the data is available on GitHub at https://github.com/SimoneTiberi/BANDITS_manuscript .
DOI: 10.6084/m9.figshare.9466508
title: Table S2. Annotations of the sequences with regulations at Hydra’s extremities compared to the central gastric region

description: See manuscript for details
DOI: 10.6084/m9.figshare.9466511
title: Table S3. Cross-analysis between the spatial and cell type specific RNA-seqs

description: See manuscript for details<br>
DOI: 10.6084/m9.figshare.9466514.v1
title: Table S4. Gene ontology analysis of stem cells corresponding to clustered genes in homeostatic conditions

description: See manuscript for details<br>
DOI: 10.6084/m9.figshare.9466505
title: Corago LOD's users satisfaction survey

description: The dataset contains the results of the Corago LOD's users satisfaction survey.<br>
DOI: 10.6084/m9.figshare.9466508.v2
title: Table S2. Annotations of the sequences with regulations at Hydra’s extremities compared to the central gastric region

description: See manuscript for details
DOI: 10.6084/m9.figshare.9467144.v5
title: Fastq files

description: Fastq files for the simulated data.
DOI: 10.6084/m9.figshare.9466505.v1
title: Corago LOD's users satisfaction survey

description: The dataset contains the results of the Corago LOD's users satisfaction survey.<br>
DOI: 10.6084/m9.figshare.9466508.v1
title: TableS2_transcripts_modulated_at_extremities

description: Table S2. Annotations of the sequences with regulations at <i>Hydra</i>’s extremities compared to the central gastric region (R3 & R4).
DOI: 10.6084/m9.figshare.9466484
title: Table S1. Annotations of the sequences corresponding to clustered genes in homeostatic conditions

description: See manuscript for details.<br>
DOI: 10.6084/m9.figshare.9466484.v2
title: Table S1. Annotations of the sequences corresponding to clustered genes in homeostatic conditions

description: See manuscript for details.<br>
DOI: 10.6084/m9.figshare.9466484.v1
title: TableS1_clustering_homeostatic_data

description: This document contains relative expression levels across the Hydra body axis in homeostatic condition. See full description in manuscript.
DOI: 10.6084/m9.figshare.9466406
title: Electronic Supplementary Material Appendix S1 (raw data) for 'Rapid evolution of leaf physiology in an introduced beach daisy'.

description: This file contains the raw data collected and used in this study.
DOI: 10.6084/m9.figshare.9466406.v1
title: Electronic Supplementary Material Appendix S1 (raw data) for 'Rapid evolution of leaf physiology in an introduced beach daisy'.

description: This file contains the raw data collected and used in this study.
DOI: 10.6084/m9.figshare.9462470
title: Raw NMR Data MRC-19-0082

description: <b>Raw NMR data for Manuscript MRC-19-0082</b>
DOI: 10.6084/m9.figshare.9462446
title: Depth-to-bedrock observations in China

description: This is a dataset of depth-to-bedrock observations in China. The dataset contains 6328 observations distributed all over the China.
DOI: 10.6084/m9.figshare.9462434
title: Table S1 from Loss of developmental diapause as prerequisite for social evolution in bees

description: Table of the species used for correlation and ancestral reconstruction analysis. For each species were assined: sociality (1- solitary, 2- social); phase (diapause phase: 1- development, 2- adult, 3- reproductive, 4- no diapause and 5- plastic); nest type (1- ground, 2- cavity); voltinism (1- univoltine, 2- multivoltine); latitude degreess: the latitude of the place of collection os the individuals assigned; date: the date used for the phylogenies construction based on the references in the Table S2; classification: classification of the species per sub-family or tribe; references: references used to fill the informations on this table; *: species that were not used in the correlation analyses; blank cell - data not available
DOI: 10.6084/m9.figshare.9462431
title: Table S2 from Loss of developmental diapause as prerequisite for social evolution in bees

description: References used to determine the topologies and branch lengths for each group in the construction of the phylogeny used for ancestral reconstruction analysis.
DOI: 10.6084/m9.figshare.9462419
title: S2 - Raw data from The multi-dimensional nature of information drives prioritization of private over social information in ants

description: The complete raw data on which the manuscript is based
DOI: 10.6084/m9.figshare.9462386
title: Dataset - Javor et al. 2019 - Social cognition, behaviour, and therapy adherence in frontal lobe epilepsy: A study combining neuroeconomic and neuropsychological methods

description: Experimental raw data (prisonerśdilemma game results) of the study: Javor et al. 2019 "Social cognition, behaviour, and therapy adherence in frontal lobe epilepsy: A study combining neuroeconomic and neuropsychological methods"
DOI: 10.6084/m9.figshare.9462386.v1
title: Dataset - Javor et al. 2019 - Social cognition, behaviour, and therapy adherence in frontal lobe epilepsy: A study combining neuroeconomic and neuropsychological methods

description: Experimental raw data (prisonerśdilemma game results) of the study: Javor et al. 2019 "Social cognition, behaviour, and therapy adherence in frontal lobe epilepsy: A study combining neuroeconomic and neuropsychological methods"
DOI: 10.6084/m9.figshare.9462335
title: Table S1. iTRAQ dataset from Oncogenic MYC amplifies mitotic perturbations

description: iTRAQ dataset using ProteinPilot score 1.3
DOI: 10.6084/m9.figshare.9462332
title: en.2019-00306 Supplemental Table 1

description: en.2019-00306 Supplemental Table 1
DOI: 10.6084/m9.figshare.9462335.v1
title: Table S1. iTRAQ dataset from Oncogenic MYC amplifies mitotic perturbations

description: iTRAQ dataset using ProteinPilot score 1.3
DOI: 10.6084/m9.figshare.9462143
title: ctra dataset

description: ctra
DOI: 10.6084/m9.figshare.9462143.v1
title: ctra dataset

description: ctra
DOI: 10.6084/m9.figshare.9462038
title: Additional file 2: of Complete genome sequence analysis of the thermoacidophilic verrucomicrobial methanotroph “Candidatus Methylacidiphilum kamchatkense” strain Kam1 and comparison with its closest relatives

description: Genome coordinates of the features shown on the outer ring of Fig. 1 and Additional file 1: Figures S3-S4. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9462038.v1
title: Additional file 2: of Complete genome sequence analysis of the thermoacidophilic verrucomicrobial methanotroph “Candidatus Methylacidiphilum kamchatkense” strain Kam1 and comparison with its closest relatives

description: Genome coordinates of the features shown on the outer ring of Fig. 1 and Additional file 1: Figures S3-S4. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9461999
title: MOESM9 of De novo transcriptome sequencing and analysis revealed the molecular basis of rapid fat accumulation by black soldier fly (Hermetia illucens, L.) for development of insectival biodiesel

description: Additional file 9: Table S4. GO annotation of differentially expressed unigenes.
DOI: 10.6084/m9.figshare.9461999.v1
title: MOESM9 of De novo transcriptome sequencing and analysis revealed the molecular basis of rapid fat accumulation by black soldier fly (Hermetia illucens, L.) for development of insectival biodiesel

description: Additional file 9: Table S4. GO annotation of differentially expressed unigenes.
DOI: 10.6084/m9.figshare.9461993
title: MOESM8 of De novo transcriptome sequencing and analysis revealed the molecular basis of rapid fat accumulation by black soldier fly (Hermetia illucens, L.) for development of insectival biodiesel

description: Additional file 8: Table S3. Differential expression unigenes.
DOI: 10.6084/m9.figshare.9461993.v1
title: MOESM8 of De novo transcriptome sequencing and analysis revealed the molecular basis of rapid fat accumulation by black soldier fly (Hermetia illucens, L.) for development of insectival biodiesel

description: Additional file 8: Table S3. Differential expression unigenes.
DOI: 10.6084/m9.figshare.9461969
title: MOESM2 of MEK inhibition remodels the active chromatin landscape and induces SOX10 genomic recruitment in BRAF(V600E) mutant melanoma cells

description: Additional file 2: Table S1. Genes exhibiting significantly different expression changes in 501mel cells in response to AZD6244 treatment. Table S2. The 250 pigmentation genes with differential expression in 501mel cells under AZD6244 treatment. Genes associated with H3K27ac loss or gain regions by GREAT analysis, or with SOX10 binding sites under AZD6244 are also indicated. Table S3. Top 5 significantly enriched transcription factor motifs identified by de novo motif enrichment analysis of genomic regions that were losing or gaining H3K27ac in 501mel cells in response to AZD6244 treatment. Table S4. The 799 super-enhancers identified in 501mel cells treated with DMSO only, and the 583 super-enhancers identified in 501mel cells treated with AZD6244. Table S5. Top enriched biological processes from GO analyses of 1080 genes associated with super-enhancers in control (DMSO-treated) 501mel cells. Table S6. Super-enhancer-associated pigmentation genes with significant expression changes following AZD6244 treatment. Table S7. GWAS loci associated with pigmentation and/or melanoma phenotypes that overlap with H3K27ac regions and/or with SOX10 binding sites.