cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.55m7b3s
title: Data from: Vocal networks remain stable after a disturbance in Emei music frogs

description: Social network analysis has been widely used to investigate the dynamics
 of social interactions and the evolution of social complexity across a
 range of taxa. Anuran species are highly dependent on vocal communication
 in mate choice; however, these species have rarely been the subject of
 social network analysis. The present study used social network analysis to
 investigate whether vocal network structures are consistent in Emei music
 frog (Babina daunchina) after the introduction of a simulated exotic rival
 of varying competitiveness into the social group. We broadcasted six
 categories of artificial calls (either highly sexually attractive calls
 produced from inside male nests or calls of low sexual attractiveness
 produced outside nests with three, five or seven notes, respectively) to
 simulate an intruder with different levels of competitiveness. We then
 constructed vocal networks for two time periods (before and after the
 disturbance) and quantified three network metrics (strength, closeness and
 betweenness) that measure different aspects of individual-level position.
 We used the mean values of these network metrics to evaluate group-level
 changes in network structure. We found that the mean strength, mean
 closeness and mean betweenness were consistent between two time periods in
 all ponds, despite the fact that the positions of some individuals had
 changed markedly after disturbance. In addition, there was no significant
 interaction effect between period and numbers of notes on the three
 network metrics. These finding suggest that the structure of vocal
 networks in Emei music frogs remain stable at the group level after a
 conspecific disturbance, regardless of the intruder’s competitiveness.
description: vocal
 interactionsthe vocal interactions
 of each treatmentvocal
 interaction.zip
DOI: 10.5061/dryad.kq46370
title: Data from: The costs and benefits of decentralization and centralization of ant colonies

description: A challenge faced by individuals and groups of many species is determining
 how resources and activities should be spatially distributed: centralized
 or decentralized. This distribution problem is hard to understand due to
 the many costs and benefits of each strategy in different settings. Ant
 colonies are faced by this problem and demonstrate two solutions: (1)
 Centralizing resources in a single nest (monodomy); and (2) Decentralizing
 by spreading resources across many nests (polydomy). Despite the
 possibilities for using this system to study the
 centralization/decentralization problem, the trade-offs associated with
 using either polydomy or monodomy are poorly understood due to a lack of
 empirical data and cohesive theory. Here, we present a dynamic network
 model of a population of ant nests which is based on observations of a
 facultatively polydomous ant species (Formica lugubris). We use the model
 to test several key hypotheses for costs and benefits of polydomy and
 monodomy and show that decentralization is advantageous when resource
 acquisition costs are high, nest size is limited, resources are clustered
 and there is a risk of nest destruction, but centralization prevails when
 resource availability fluctuates and nest size is limited. Our model
 explains the phylogenetic and ecological diversity of polydomous ants,
 demonstrates several trade-offs of decentralization and centralization,
 and provides testable predictions for empirical work on ants and in other
 systems.
description: main_data_polydomy_modelmain model results for polydomy modelcompetition_sensitivity_datadata from the competition sensitivity analysisappendix9_sensitivity_datadata from Appendix 9 sensitivity analyses
DOI: 10.15468/dl.98pjv3
title: Occurrence Download

description: A dataset containing 922676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-84.88712 -38.13562,-74.69772 -38.13562,-74.69772 -29.84084,-84.88712 -29.84084,-84.88712 -38.13562))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 922676 records from 295 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001767-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.c161n6g
title: Data from: The association between eating difficulties and biliary sludge in the gallbladder in older adults with advanced dementia, at end of life

description: Objectives: In clinical settings, untreatable biliary sludge in the
 gallbladder can be observed in older adults with advanced dementia. The
 underlying cause of biliary sludge existence in patients with dementia is
 currently unknown. Therefore, we aimed to investigate the prevalence, risk
 factors, and related outcomes of biliary sludge formation in the
 gallbladder of older adults with dementia Design: Cross-sectional study.
 Setting: Geriatric ward of University Hospital in Japan Participants:
 Inpatients aged 80 and older suffering with dementia. Measurements: We
 evaluated the presence of biliary sludge by diagnostic ultrasonography and
 collected data regarding patient demographic information, cognition
 (mini-mental state examination [MMSE]), physical activity (Barthel Index),
 oral food intake (food intake level scale [FILS]), clinical stage of
 dementia (functional assessment staging [FAST] of dementia), and patient
 performance status (Zubrod/ Karnofsky score). Results: Male sex, larger
 gallbladder volume and calories from oral intake were significantly
 associated with the presence of biliary sludge (P =.02, .02, .002,
 respectively). There was a significant negative correlation between the
 FAST stage and the FILS level in all patients (P &lt;.001). More
 advanced dementia and dysphagia was more likely to be found in patients
 with Alzheimer disease (AD) with biliary sludge, compared to patients with
 AD without biliary sludge (FAST 7a, FILS II and FAST 6c, FILS V,
 respectively, P =.06, 04). A logistic regression analysis revealed that
 the eating status of FILS I and II, generally called “fasting or
 anorexia”, was a significant risk factor for forming biliary sludge in
 older adults with dementia (P =.031, odds ratio: 5.25, 95% confidence
 interval: 1.16-23.72). Conclusions: Fasting status may be associated with
 the existence of biliary sludge in older adults with dementia. Therefore,
 supportive care for eating might be an important solution to comfortable
 end-of-life care for older adults with advanced dementia.
description: Data of biliary sludge
 in the advanced dementiaBiliary sludge,
 dysphagia, dementiaData of PONE
 D-18-23437.csv
DOI: 10.5061/dryad.jt02m1b
title: Data from: Interactive effects of social environment, age and sex on immune responses in Drosophila melanogaster

description: Social environments have been shown to have multiple effects on individual
 immune responses. For example, increased social contact might signal
 greater infection risk and prompt a prophylactic upregulation of immunity.
 This differential investment of resources may in part explain why social
 environments affect ageing and lifespan. Our previous work using
 Drosophila melanogaster showed that single-sex social contact reduced
 lifespan for both sexes. Here, we assess how social interactions
 (isolation or contact) affect susceptibility to infection, phagocytotic
 activity and expression of a subset of immune and stress related genes in
 young and old flies of both sexes. Social contact had a neutral, or even
 improved, effect on post-infection lifespan in older flies and reduced the
 expression of stress response genes in females, however it reduced
 phagocytotic activity. Together, these findings indicate that social
 contact in D. melanogaster does not have a predictable impact on immune
 responses and does not simply trade-off immune investment with lifespan.
description: Data associated with
 Leech et al 2019 JEB
DOI: 10.5061/dryad.t60vh3p
title: Data from: Strengths and potential pitfalls of hay-transfer for ecological restoration revealed by RAD-seq analysis in floodplain Arabis species

description: Achieving high intraspecific genetic diversity is a critical goal in
 ecological restoration as it increases the adaptive potential and
 long-term resilience of populations. Thus, we investigated genetic
 diversity within and between pristine sites in a fossil floodplain and
 compared it to sites restored by hay-transfer between 1997 and 2014.
 RAD-seq genotyping revealed that the stenoecious flood-plain species
 Arabis nemorensis is co-occurring with individuals that, based on ploidy,
 ITS-sequencing and morphology, probably belong to the close relative
 Arabis sagittata, which has a documented preference for dry calcareous
 grasslands but has not been reported in floodplain meadows. We show that
 hay-transfer maintains genetic diversity for both species. Additionally,
 in A. sagittata, transfer from multiple genetically isolated pristine
 sites resulted in restored sites with increased diversity and admixed
 local genotypes. In A. nemorensis, transfer did not create novel admixture
 dynamics because genetic diversity between pristine sites was less
 differentiated. Thus, the effects of hay-transfer on genetic diversity
 also depend on the genetic makeup of the donor communities of each
 species, especially when local material is mixed. Our results demonstrate
 the efficiency of hay-transfer for habitat restoration and emphasize the
 importance of pre-restoration characterization of micro-geographic
 patterns of intraspecific diversity of the community to guarantee that
 restoration practices reach their goal, i.e. maximize the adaptive
 potential of the entire restored plant community. Overlooking these
 patterns may alter the balance between species in the community.
 Additionally, our comparison of summary statistics obtained from de novo
 and reference-based RAD-seq pipelines shows that the genomic impact of
 restoration can be reliably monitored in species lacking prior genomic
 knowledge.
description: SNPs_allSamples_refBasedVCF-File of all samples from the reference based pipelineall_reference.vcfSNPs_allSamples_denovoVCF file of all samples from the de novo pipeline (STACKS)all_denovo.vcfSNPs_nemorensis_refBasedVCF file for Arabis nemorensis samples from the reference based pipelinenemorensis_reference.vcfSNPs_nemorensis_denovoVCF file of Arabis nemorensis samples from the de novo pipelinenemorensis_denovo.vcfSNPs_sagittata_refBasedVCF file of Arabis sagittata samples from the reference-based pipelinesagittata_reference.vcfSNPs_sagittata_denovoVCF file of Arabis sagittata samples from the de novo pipelinesagittata_reference.vcfPopulation assignmentTable to assign each sample to a populationpopmap_rhine.tsvPopulation informationTable giving additional information about populationspopulations.csvR Markdown fileR Markdown file of the statistical analysis of the VCF filesstatistics.Rmd
DOI: 10.5061/dryad.b65fr50
title: Data from: Defoliation of a grass by reindeer is compensated by the positive effects of its soil legacy, dung deposition, and moss removal

description: Herbivory is one of the key drivers shaping plant community dynamics.
 Herbivores can strongly influence plant productivity directly through
 defoliation and the return of nutrients in the form of dung and urine, but
 also indirectly by reducing the abundance of neighbouring plants and
 inducing changes in soil processes. However, the relative importance of
 these processes is poorly understood. We, therefore, established a common
 garden experiment to study plant responses to defoliation, dung addition,
 moss cover, and the soil legacy of reindeer grazing. We used an arctic
 tundra grazed by reindeer as our study system, and Festuca ovina, a common
 grazing-tolerant grass species as the model species. The soil legacy of
 reindeer grazing had the strongest effect on plants, and resulted in
 higher growth in soils originating from previously heavily-grazed sites.
 Defoliation also had a strong effect and reduced shoot and root growth and
 nutrient uptake. Plants did not fully compensate for the tissue lost due
 to defoliation, even when nutrient availability was high. In contrast,
 defoliation enhanced plant nitrogen concentrations. Dung addition
 increased plant production, nitrogen concentrations and nutrient uptake,
 although the effect was fairly small. Mosses also had a positive effect on
 aboveground plant production as long as the plants were not defoliated.
 The presence of a thick moss layer reduced plant growth following
 defoliation. This study demonstrates that grasses, even though they suffer
 from defoliation, can tolerate high densities of herbivores when all
 aspects of herbivores on ecosystems are taken into account. Our results
 further show that the positive effect of herbivores on plant growth via
 changes in soil properties is essential for plants to cope with a high
 grazing pressure. The strong effect of the soil legacy of reindeer grazing
 reveals that herbivores can have long-lasting effects on plant
 productivity and ecosystem functioning after grazing has ceased.
description: Plant, microclimate and
 soil N dataData file of response of
 the experimental plants, microclimate and soil N availability to the
 experimental treatmentsoikos.xlsx
DOI: 10.5061/dryad.nb1q399
title: Data from: Genomics of rapid ecological divergence and parallel adaptation in four tidal marsh sparrows

description: Theory suggests that different taxa having colonized a similar,
 challenging environment will show parallel or lineage-specific adaptations
 to shared selection pressures, but empirical examples of parallel
 evolution in independent taxa are exceedingly rare. We employed
 comparative genomics to identify parallel and lineage-specific responses
 to selection within and among four species of North American sparrows that
 represent four independent, post-Pleistocene colonization events by an
 ancestral, upland subspecies and a derived salt marsh specialist. We
 identified multiple cases of parallel adaptation in these independent
 comparisons following salt marsh colonization, including selection on
 twelve candidate genes linked to osmoregulation. In addition to detecting
 shared genetic targets of selection across multiple comparisons, we found
 many novel, species-specific signatures of selection, including evidence
 of selection on loci associated with both physiological and behavioral
 mechanisms of osmoregulation. Demographic reconstructions of all four
 species highlighted their recent divergence and small effective population
 sizes, as expected given their rapid radiation into saline environments.
 Our results highlight the interplay of both shared and lineage-specific
 selection pressures in the colonization of a biotically and abiotically
 challenging habitat and confirm theoretical expectations that steep
 environmental clines can drive repeated and rapid evolutionary
 diversification in birds.
description: Savannah Sparrows -
 Genomic DataFiltered VCF containing
 approximately 13 million SNPs. This file contains data for 20 individuals
 (c = coastal, u = upland). See extended data table 1 for sample
 information.SavannahSparrows_Filtered_Walsh
 et al 2019.vcfNelson's Sparrow -
 Genomic DataFiltered VCF containing
 approximately 2.5 million SNPs. This file contains data for 17 individuals
 (c = coastal, u = upland). See extended data table 1 for sample
 informationNelsonsSparrow_Filtered_Walsh
 et al 2019.vcfSong Sparrow - Genomic
 DataFiltered VCF containing
 approximately 2.3 million SNPs. This file contains data for 20 individuals
 (c = coastal, u = upland). See extended data table 1 for sample
 information.SongSparrows_FinalFiltered_Walsh et al 2019.vcfSwamp Sparrow - Genomic DataFiltered VCF containing approximately 12.3 million SNPs. This file contains data for 22 individuals (c = coastal, u = upland). Se extended data table 1 for sample information.SwampSparrow_FinalFiltered_Walsh et al 2019.vcf
DOI: 10.82294/dvnovetji
title: Entrevistas semiestructuradas. Territorio: Norte de Santander. Sector: Cultura. Año: 2024

description: A partir de un proceso de acompañamiento situado, se recopilaron testimonios por medio de entrevistas semiestructuradas durante el año 2024, las cuales indagaron sobre 4 categorías que describían la práctica en educación artística de docentes, cultores, sabedores de la enseñanza del arte, que hacían parte de los programas de formación en educación artística y cultural del sector Cultura (educación informal) en el departamento de Norte de Santander.
DOI: 10.5061/dryad.17c6hj3
title: Data from: Functional diversity is a passenger but not driver of drought-related plant diversity losses in annual grasslands

description: 1. Effects of climate change on plant community functional diversity are
 of interest since experiments have found functional diversity to predict
 ecosystem function. Functional diversity has been hypothesized to confer
 resilience to plant communities (as a “driver” of community change), but
 in unmanipulated natural communities, it might alternatively (or
 additionally) act as a “passenger” by responding to changes in plant
 diversity caused by extrinsic factors such as climate. 2. We examined
 trends in plant functional diversity in annual grasslands in Northern
 California over a 19-year period, during which a trend toward drier
 winters had previously been associated with the losses of
 drought-intolerant species. We tested whether functional diversity
 decreased over the period of the study (acting as a passenger), and also
 whether initial site functional diversity influenced the degree of
 community change over the study period (acting as a driver). 3. Initial
 community functional diversity was not related to species richness loss or
 community variability. We found that functional diversity declined as
 plant species richness and community mean specific leaf area declined over
 the course of the study, and all of these trends were associated with
 declining precipitation, indicating that functional diversity acted as a
 passenger of community change. 4. Synthesis. This study is among the first
 to demonstrate that recent climatic trends may drive loss of functional
 diversity. Our findings highlight that functional diversity does not
 necessarily confer community resilience when its variation is shaped by
 the environment rather than by experimental treatments.
description: diversity_dataData on functional diversity and other variables measured at each site in years 2000-2018precipitation dataData on winter (December-February) precipitation for each year of the studyprecip.csvinitial_fd_and_cv_dataIntial (year 2000) variables and variables relating to community dynamics across multiple years
DOI: 10.5061/dryad.2fv7mt8
title: Data from: How to predict biodiversity in space? An evaluation of modelling approaches in marine ecosystems

description: Aim: Biodiversity prediction becomes increasingly important in the face of
 global diversity loss, whereas substantial challenges still exist in both
 conceptual and technical aspects. There exist many predictive models, and
 an integrative evaluation can help understand their performance in
 handling the multifacets of biodiversity. This study aims to evaluate the
 performance of these modelling approaches to predict both α‐ and
 β‐diversity in diverse ecological contexts. Location: North Yellow Sea,
 China. Methods: The biodiversity models follow three strategies, “assemble
 first, predict later”, “predict first, assemble later” and “assemble and
 predict together”. Hill diversity profile, Fisher's log‐series
 parameter and the distance decay of similarity are used to measure α‐ and
 β‐diversity. The evaluation study is conducted based on seasonal bottom
 trawl surveys from October 2016 to August 2017 in North Yellow Sea, China,
 allocated to coastal and offshore areas. We evaluate the predictive power
 of the models using cross‐validation. Results: Following the “assemble
 first, predict later” approach, macroecological model (MEM) provided the
 most accurate prediction overall, whereas stacked species distribution
 model (SSDM) and joint species distribution model (JSDM), following the
 second and third modelling approaches, tended to overestimate α‐diversity
 and underestimate β‐diversity. The performances of SSDM and JSDM could be
 improved by moderately down‐weighting rare species. The relative
 performances of the three modelling approaches were consistent among
 seasons and spatial regions. Main conclusions: The superior performances
 of MEM in a range of temporal and spatial contexts favour the “assemble
 first, predict later” approach and imply a tight community assembly in the
 studied area. The overall predictive powers of varying models suggest that
 the spatial pattern of marine biodiversity could be fairly well predicted
 with commonly accessible hydrologic data in a mesoscales. The approach of
 multi‐model evaluations is applicable to a variety of ecosystems for
 biodiversity prediction.
description: SimulationR code of the simulation studyRaw dataData of species abundance and environmental variables for modellingbio&env3.Rdata
DOI: 10.15468/dl.44z783
title: Occurrence Download

description: A dataset containing 3466 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1060.0",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Platyla foliniana, Renea bourguignatiana, Renea elegantissima, Montserratina becasis, Fusulus interruptus, Leucostigma candidescens, Helicopsis striata, Tyrrhenaria ceratina, Leiostyla anglica, Urticicola isaricus ventouxianus, Renea gormonti, Cochlodina triloba, Retinella olivetorum, Cochlicella conoidea, Xerosecta explanata, Vitrea pseudotrolli, Vertigo genesii, Platyla callostoma, Renea paillona, Cochlostoma acutum, Abida gittenbergeri, Chondrina gerhardi, Solatopupa psarolena, Macrogastra badia, Ruthenica filograna, Arianta xatartii, Chilostoma frigidum, Corneola crombezi, Macularia saintivesi, Marmorana muralis, Hygromia tassyi, Urticicola suberinus, Mediterranea depressa)"
 ]
}

 The dataset includes 3466 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001811-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9ye2s
title: Occurrence Download

description: A dataset containing 3514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1060.0",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Platyla foliniana, Renea bourguignatiana, Renea elegantissima, Montserratina becasis, Fusulus interruptus, Leucostigma candidescens, Helicopsis striata, Tyrrhenaria ceratina, Leiostyla anglica, Urticicola isaricus ventouxianus, Renea gormonti, Cochlodina triloba, Retinella olivetorum, Cochlicella conoidea, Xerosecta explanata, Vitrea pseudotrolli, Vertigo genesii, Platyla callostoma, Renea paillona, Cochlostoma acutum, Abida gittenbergeri, Chondrina gerhardi, Solatopupa psarolena, Macrogastra badia, Ruthenica filograna, Arianta xatartii, Chilostoma frigidum, Corneola crombezi, Macularia saintivesi, Marmorana muralis, Hygromia tassyi, Urticicola suberinus, Mediterranea depressa, Granaria stabilei anceyi, Clausilia cruciata bonellii)"
 ]
}

 The dataset includes 3514 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001814-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.