cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/naq-5fk-267
title: Carex lachenalii Schkuhr

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/cp2-w66-72e
title: Festuca richardsonii Hook.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/g3n-bea-qel
title: Alchemilla subcrenata Buser

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.5061/dryad.b28t0q7
title: Data from: Resolving the heading-direction ambiguity in vertical-beam radar observations of migrating insects

description: 1. Each year, massive numbers of insects fly across the continents at
 heights of hundreds of metres, carried by the wind, bringing both
 environmental benefits and serious economic and social costs. To
 investigate the insects’ flight behaviour and their response to winds,
 entomological radar has proved to be a particularly valuable tool;
 however, its observations of insect orientation are ambiguous with regard
 to the head/tail direction and this greatly hinders interpretation of the
 migrants’ flight behaviour. 2. We have developed two related methods of
 using wind data to resolve the head/tail ambiguity and we have compared
 their outputs with those from simply assigning the heading direction to be
 that which is closer to the track direction. We applied all three methods
 to observations of Australian Plague Locust migrations made with an Insect
 Monitoring Radar. 3. For the study dataset, some of the headings selected
 by the simpler method are shown to be clearly incorrect. The two new
 methods generally agree and reveal a significantly different, and
 presumably more accurate, relationship of heading direction to track
 direction. However, use of these methods leads to quite a large proportion
 of the sample being lost because the wind values, which derive from a
 regional-scale numerical model, are shown to be incompatible with the
 radar observations. This exploratory study has moreover demonstrated that
 locusts are frequently oriented at a large angle to their track, and that
 quite often their movement is at least slightly tail-first. 4. Both new
 methods appear to be a significant improvement on the simpler method. As
 well as providing an accurate representation of migratory flight
 behaviour, they allow occasions when the model wind values are unreliable
 to be eliminated from the data sample.
description: radar-observation_strong-migration-nights_2010-2011The data includes radar observations and wind simulations of Australian Plague locust strong migrations on 45 nights in 2010-2011.
DOI: 10.5061/dryad.4fc2591
title: Data from: Trophic interactions and abiotic factors drive functional and phylogenetic structure of vertebrate herbivore communities across the Arctic tundra biome

description: Communities are assembled from species that evolve or colonise a given
 geographic region, and persist in the face of abiotic conditions and
 interactions with other species. The evolutionary and colonisation
 histories of communities are characterised by phylogenetic diversity,
 while functional diversity is indicative of abiotic and biotic conditions.
 The relationship between functional and phylogenetic diversity infers
 whether species functional traits are divergent (differing between related
 species) or convergent (similar among distantly related species). Biotic
 interactions and abiotic conditions are known to influence macroecological
 patterns in species richness, but how functional and phylogenetic
 diversity of guilds vary with biotic factors, and the relative importance
 of biotic drivers in relation to geographic and abiotic drivers is
 unknown. In this study, we test whether geographic, abiotic or biotic
 factors drive biome-scale spatial patterns of functional and phylogenetic
 diversity and functional convergence in vertebrate herbivores across the
 Arctic tundra biome. We found that functional and phylogenetic diversity
 both peaked in the Western North American Arctic, and that spatial
 patterns in both were best predicted by trophic interactions, namely
 vegetation productivity and predator diversity, as well as climatic
 severity. Our results show that both bottom-up and top-down trophic
 interactions, as well as winter temperatures, drive functional and
 phylogenetic structure of Arctic vertebrate herbivore assemblages.. This
 has implications for changing Arctic ecosystems; under future warming and
 northward movement of predators potential increases in phylogenetic and
 functional diversity in vertebrate herbivores may occur. Our study thus
 demonstrates that trophic interactions can determine large-scale
 functional and phylogenetic diversity just as strongly as abiotic
 conditions.
description: ArcticHerbivoresFunctionalandPhylogeneticDiversityIncludes: Genetic sequence alignments, Arctic vertebrate herbivore phylogeny, Arctic vertebrate herbivore functional trait data, Arctic vertebrate herbivore functional classification. Diversity data and environmental data.ArcticHerbivoresFDPD.zip
DOI: 10.5061/dryad.70j346p
title: Data from: Uncovering the genomic signature of ancient introgression between white oak lineages (Quercus)

description: • Botanists have long recognized interspecific gene flow as a common
 occurrence within white oaks (Quercus section Quercus). Historical allele
 exchange, however, has not been fully characterized, and the complex
 genomic signals resulting from the combination of vertical and horizontal
 gene transmission may confound phylogenetic inference and obscure our
 ability to accurately infer the deep evolutionary history of oaks. • Using
 anchored enrichment, we obtained a phylogenomic dataset consisting of
 hundreds of single-copy nuclear loci. Concatenation, species tree, and
 network analyses were carried out in an attempt to uncover the genomic
 signal of ancient introgression and infer the divergent phylogenetic
 topology for the white oak clade. Locus and site-level likelihood
 comparisons were then conducted to further explore the introgressed signal
 within our dataset. • Historical, intersectional gene flow is suggested to
 have occurred between (1) an ancestor of the Eurasian Roburoid lineage and
 Quercus pontica and (2) North American Dumosae and Prinoideae lineages. •
 Despite extensive time past, our approach proved successful in detecting
 the genomic signature of ancient introgression. Our results, however,
 highlight the importance of sampling and the use of a plurality of
 analytical tools and methods to sufficiently explore genomic datasets,
 uncover this signal, and accurately infer evolutionary history.
description: Alignment - concatenated
 493 AHE loci493 nuclear loci
 concatenated alignment in PHYLIP format.concatenated_493.phyAlignment - concatenated loci with no missing taxaconcatenated alignment of loci with complete taxon occupancy (no missing data) in PHYLIP format.concatenated_no_missing_taxa.phycombined gene treesNewick tree file containing gene trees estimated from individual loci with complete taxon occupancy. Trees estimated with RAxML.combined_gene_trees_no_missing_taxa.tre
DOI: 10.18167/dvn1/8kl5pc
title: Data and code of the publication entitled: A common framework to model recovery in disturbed tropical forests

description: We developed an original Bayesian hierarchical model of recovery trajectories, considering disturbed forests in a common framework, through a disturbance intensity gradient, inferred with the loss of basal area due to disturbance. As a case study, we tested our modelling approach on above-ground biomass, Shannon taxonomic diversity and taxonomic composition similarity from two long-term experiments, Tirimbina (Costa Rica) and Paracou (French Guiana), where forest permanent sample plots have been set up following selective logging (63.25 ha), agriculture (4 ha), and clearcutting+fire (6.25 ha).
&lt;br&gt;
&lt;strong&gt;This dataset contains:&lt;/strong&gt;

&lt;ul&gt;
&lt;li&gt;&lt;strong&gt;1 dictionary data text file&lt;/strong&gt;&lt;/li&gt;
&lt;li&gt;&lt;strong&gt;5 model scripts (run under the R package rstan version 2.26.13):&lt;/strong&gt;
&lt;ul&gt;
&lt;li&gt;Stan codes for the vegetation attribute predictions: above-ground biomass (AGB), Shannon diversity, and composition similarity.&lt;/li&gt;
&lt;li&gt;Stan codes for the general models of long-term and long- + short-term processes presented in the publication.&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;&lt;strong&gt;12 data sets:&lt;/strong&gt;
&lt;ul&gt;
&lt;li&gt;Basal area in disturbed forests, and in old-growth forests (for above-ground biomass and Shannon diversity predictions)&lt;/li&gt;
&lt;li&gt;Above-ground biomass in disturbed forests, and in old-growth forests (for above-ground biomass predictions)&lt;/li&gt;
&lt;li&gt;Shannon diversity in disturbed forests, and in old-growth forests (for Shannon diversity predictions)&lt;/li&gt;
&lt;li&gt;Basal area in selectively logged forest, in clearcut+fire forest, and in old-growth forests (for composition similarity predictions)&lt;/li&gt;
&lt;li&gt;Composition similarity in selectively logged forest, in clearcut+fire forest, and in old-growth forests (for composition similarity predictions)&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;&lt;/ul&gt;
description: R package rstan, 2.26.13
DOI: 10.5061/dryad.nq02fm3
title: Data from: Data gaps and opportunities for comparative and conservation biology

description: Biodiversity loss is a major challenge. Over the past century, the average
 rate of vertebrate extinction has been about 100-fold higher than the
 estimated background rate and population declines continue to increase
 globally. Birth and death rates determine the pace of population increase
 or decline, thus driving the expansion or extinction of a species. Design
 of species conservation policies hence depends on demographic data (e.g.,
 for extinction risk assessments or estimation of harvesting quotas).
 However, an overview of the accessible data, even for better known taxa,
 is lacking. Here, we present the Demographic Species Knowledge Index,
 which classifies the available information for 32,144 (97%) of extant
 described mammals, birds, reptiles, and amphibians. We show that only 1.3%
 of the tetrapod species have comprehensive information on birth and death
 rates. We found no demographic measures, not even crude ones such as
 maximum life span or typical litter/clutch size, for 65% of threatened
 tetrapods. More field studies are needed; however, some progress can be
 made by digitalizing existing knowledge, by imputing data from related
 species with similar life histories, and by using information from captive
 populations. We show that data from zoos and aquariums in the Species360
 network can significantly improve knowledge for an almost eightfold gain.
 Assessing the landscape of limited demographic knowledge is essential to
 prioritize ways to fill data gaps. Such information is urgently needed to
 implement management strategies to conserve at-risk taxa and to discover
 new unifying concepts and evolutionary relationships across thousands of
 tetrapod species.
description: DataThis folder contains 1.)
 the metadatabase of 22 data sources with 115,356 standardised demographic
 records for 14,529 taxonomically standardised species of 10 standardised
 demographic variables that were used in the article, 2.) the Demographic
 species knowledge index (DSKI), which indicates the amount of knowledge on
 mortality and fertility for a total of 32,144 species, which was
 calculated based on the amount of information present in the
 “DemographicDatabase.csv” used in the article. Additionally it includes
 the IUCN Red List Status and if the species is present in a zoo or
 aquarium in ZIMS, and the species taxonomic id for Catalog of Life and
 GBIF.MetaDataThe folder contains detailed documentation of the content of the data files in the folder “Data”: 1.) the documentation of column names, 2.) the references of the 22 demographic source databases, 3.) the original demographic variable names provided in the 22 source databases before demographic standardisation, their definition, and their demographic variable name after standardisation.
DOI: 10.5281/zenodo.18391378
title: BOSHLANG'ICH TA'LIMDA RAQAMLI TEXNOLOGIYALAR YORDAMIDA O'QUVCHILARNING MUSTAQIL FIKRLASH QOBILIYATINI RIVOJLANTIRISH METODIKASI

description: Mazkur maqolada boshlang‘ich ta’lim jarayonida raqamli texnologiyalar yordamida o‘quvchilarning mustaqil fikrlash qobiliyatini rivojlantirish metodikasi ilmiy-nazariy va amaliy jihatdan tahlil qilinadi. Tadqiqotda raqamli ta’lim platformalari, interaktiv topshiriqlar, multimediali vositalar hamda sun’iy intellekt elementlariga asoslangan mashqlardan foydalanishning pedagogik samaradorligi o‘rganildi. Tajriba-sinov natijalari raqamli texnologiyalar asosida tashkil etilgan darslar o‘quvchilarning mustaqil, tanqidiy va ijodiy fikrlash ko‘nikmalarini sezilarli darajada rivojlantirishini ko‘rsatdi.
DOI: 10.5281/zenodo.18391377
title: BOSHLANG'ICH TA'LIMDA RAQAMLI TEXNOLOGIYALAR YORDAMIDA O'QUVCHILARNING MUSTAQIL FIKRLASH QOBILIYATINI RIVOJLANTIRISH METODIKASI

description: Mazkur maqolada boshlang‘ich ta’lim jarayonida raqamli texnologiyalar yordamida o‘quvchilarning mustaqil fikrlash qobiliyatini rivojlantirish metodikasi ilmiy-nazariy va amaliy jihatdan tahlil qilinadi. Tadqiqotda raqamli ta’lim platformalari, interaktiv topshiriqlar, multimediali vositalar hamda sun’iy intellekt elementlariga asoslangan mashqlardan foydalanishning pedagogik samaradorligi o‘rganildi. Tajriba-sinov natijalari raqamli texnologiyalar asosida tashkil etilgan darslar o‘quvchilarning mustaqil, tanqidiy va ijodiy fikrlash ko‘nikmalarini sezilarli darajada rivojlantirishini ko‘rsatdi.
DOI: 10.5061/dryad.1bc102k
title: Data from: Phenology of Drosophila species across a temperate growing season and implications for behavior

description: Drosophila community composition is complex in temperate regions with
 different abundance of flies and species across the growing season.
 Monitoring Drosophila populations provides insights into the phenology of
 both native and invasive species. Over a single growing season, we
 collected Drosophila at regular intervals and determined the number of
 individuals of the nine species we found in Kansas, USA. Species varied in
 their presence and abundance through the growing season with peak
 diversity occurring after the highest seasonal temperatures. We developed
 models for the abundance of the most common species, Drosophila
 melanogaster, D. simulans, D. algonquin, and the recent invasive species,
 D. suzukii. These models revealed that temperature played the largest role
 in abundance of each species across the season. For the two most commonly
 studied species, D. melanogaster and D. simulans, the best models indicate
 shifted thermal optima compared to laboratory studies, implying that
 fluctuating temperature may play a greater role in the physiology and
 ecology of these insects than indicated by laboratory studies, and should
 be considered in global climate change studies.
description: survey.countsThe counts of each species and sex for all collections included in the study.weather.dataThe weather data for 2014 from Billard Municipal Airport in Topeka, KS that was used in the calculations.initial.valuesThe suggested initial values for the model. See the R Scripts for more information about the model.RScriptsThe RScripts used to calculate the model.
DOI: 10.5061/dryad.32h05c2
title: Data from: Invasive species removal increases species and phylogenetic diversity of wetland plant communities

description: Plant invasions result in biodiversity losses and altered ecological
 functions, though quantifying loss of multiple ecosystem functions
 presents a research challenge. Plant phylogenetic diversity correlates
 with a range of ecosystem functions, and can be used as a proxy for
 ecosystem multifunctionality. Laurentian Great Lakes coastal wetlands are
 ideal systems for testing invasive species management effects because they
 support diverse biological communities, provide numerous ecosystem
 services, and are increasingly dominated by invasive macrophytes. Invasive
 cattails are among the most widespread and abundant of these taxa. We
 conducted a three-year study in two Great Lakes wetlands, testing the
 effects of a gradient of cattail removal intensities (mowing, harvest,
 complete biomass removal) within two vegetation zones (emergent marsh, wet
 meadow) on plant taxonomic and phylogenetic diversity. To evaluate native
 plant recovery potential, we paired this with a seed-bank emergence study
 that quantified diversity metrics in each zone under experimentally
 manipulated hydroperiods. Pre-treatment, we found that wetland zones had
 distinct plant community composition. Wet meadow seed banks had greater
 taxonomic and phylogenetic diversity than emergent marsh seed banks, and
 high-water treatments tended to inhibit diversity by reducing germination.
 Aboveground harvesting of cattails and their litter increased phylogenetic
 diversity and species richness in both zones, more than doubling richness
 compared to unmanipulated controls. In the wet meadow, harvesting shifted
 the community toward an early successional state, favoring seed-bank
 germination from early seral species, whereas emergent marsh complete
 removal treatments shifted the community toward an aquatic condition,
 favoring floating-leaved plants. Removing cattails and their litter
 increased taxonomic and phylogenetic diversity across water levels, a key
 environmental gradient, thereby potentially increasing the
 multifunctionality of these ecosystems. Killing invasive wetland
 macrophytes but leaving their biomass in situ does not address their
 underlying mechanism of dominance and is less effective than more
 intensive treatments that also remove their litter.
description: LishawaEtal_DataData from Lishawa et al. LishawaEtalFieldData spreadsheet represents plot-level data from three-year field experiment including: identifiers, treatment, summary statistics, taxonomic and phylogenetic diversity metrics, and species-level plant cover data. LishawaEtalSeedData spreadsheet represents seed bank emergence experiment data including: identifiers, treatment, summary statistics, taxonomic and phylogenetic diversity metrics, and species-level stem count data. SpeciesNames spreadsheet provides binomials for the six-letter shorthand used in data files.
DOI: 10.5061/dryad.8625cv1
title: Data from: Climate impacts on the ocean are making the Sustainable Development Goals a moving target traveling away from us

description: 1. Climate change is impacting marine ecosystems and their goods and
 services in diverse ways, which can directly hinder our ability to achieve
 the Sustainable Development Goals, set out under the 2030 Agenda for
 Sustainable Development. 2. Through expert elicitation and a literature
 review, we find that most climate change effects have a wide variety of
 negative consequences across marine ecosystem services, though most
 studies have highlighted impacts from warming and consequences to marine
 species. 3. Climate change is expected to negatively influence marine
 ecosystem services through global stressors – such as ocean warming and
 acidification – but also by amplifying local and regional stressors such
 as freshwater runoff and pollution load. 4. Experts indicated that all
 Sustainable Development Goals would be overwhelmingly negatively affected
 by these climate impacts to marine ecosystem services, with eliminating
 hunger being among the most directly negatively affected Sustainable
 Development Goal. 5. Despite these challenges, the Sustainable Development
 Goals aiming to transform our consumption and production practices and
 develop clean energy systems are found to be least affected by marine
 climate impacts. These findings represent a strategic point of entry for
 countries to achieve sustainable development, given that these two goals
 are relatively robust to climate impacts and that they are important
 pre-requisite for other Sustainable Development Goals. 6. Our results
 suggest that climate change impacts on marine ecosystems are set to make
 the Sustainable Development Goals a moving target traveling away from us.
 Effective and urgent action towards sustainable development, including
 mitigating and adapting to climate impacts on marine systems are important
 to achieve the Sustainable Development Goals, but the longer this action
 stalls the more distant these goals will become.
description: Relationships of
 impacted ocean ecosystem services to SDGsA matrix of affects of
 impacted marine ecosystem services across SDG targets. Expert comments and
 supporting literature are provided in comment boxes corresponding to
 specific cells. Certainty categories are also indicated for each
 relationshipSupplement - all relationships
 ES SDG.xlsxMechanisms of climate
 change impacts to marine ecosystem servicesA database of mechanisms
 of climate change impacts to marine ecosystem services based on a scoping
 review of the published literature from 2012-2018Supplement - CC
 mechanisms.xlsx
DOI: 10.5061/dryad.3kr736p
title: Data from: Antagonistic responses of exposure to sublethal temperatures: adaptive phenotypic plasticity coincides with a reduction in organismal performance

description: A fitness benefit of phenotypic plasticity is the ability of an organism
 to survive short-term, deleterious environmental fluctuations. Yet, the
 influence of selection on plasticity in modulating shifts in phenotypic
 traits remains unclear. Short-term phenotypic plasticity in thermal
 tolerance traits is attained by exposure to sublethal hot or cold
 temperatures (i.e. the hardening response). Heat hardening is expected to
 buffer organisms from the unpredictability of extreme thermal fluctuations
 in the environment so as to minimize interruptions in activity and enhance
 survival. However, exposure to sublethal temperatures might entail other
 phenotypic costs that constrain or inhibit the prolonged use of hardening
 responses across longer timescales. Here, we estimated the onset of the
 heat hardening response, physiological and behavioral shifts during heat
 hardening, and geographic variation in heat hardening using tree lizards
 (Urosaurus ornatus). Peak heat hardening occurred 6h after exposure to
 sublethal temperatures. We found that both preferred body temperatures and
 locomotor performance diminished following exposure to sublethal
 temperatures, and performance levels did not approach pre-exposure levels
 until after the peak hardening response. We also found support for
 intraspecific variation in the hardening response along an environmental
 gradient, where populations in more thermally variable environments
 exhibited stronger plastic responses and populations with higher baseline
 heat tolerances exhibited weaker plastic responses. Sublethal temperature
 exposure might induce plasticity in thermal tolerance, however we have
 characterized other phenotypic shifts that might curtail chronic reliance
 on plasticity in thermal traits as a mechanism of responding to changes in
 thermal environments induced by climate warming.
description: GilbertMiles2019_AmericanNaturalist_RawDataRaw data used in experiments 1-4 (each experiment on a separate tab).GilbertMiles2019_AmNat_RawData.xlsx