cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/87k9rssdm4.2
title: NCodR: A multi-class SVM classification to distinguish between non-coding RNAs in Viridiplantae

description: Non-coding RNAs (ncRNA) are major players in the regulation of gene expression. However, the identification and classification of ncRNAs are major bottlenecks in understanding their functional roles. This study analyses seven classes of ncRNAs in plants using sequence and secondary structure-based RNA folding measures. Support vector machines employing radial basis function show the highest accuracy in discriminating ncRNAs, and the classifier is implemented as a web server, NCodR. This study will provide a reliable platform for the genome-wide prediction and classification of ncRNAs in plants and enrich our understanding of plant ncRNAs, which may be further used for crop improvements using genome-editing technology. The codes are available at https://gitlab.com/sunandanmukherjee/ncodr while the webserver is available at http://www.csb.iitkgp.ac.in/applications/NCodR/index

A dataset of ncRNAs in Viridiplantae was curated to quantify the various sequence and RNA folding measures, which is further used to classify ncRNAs. The dataset was curated from RNACentral, applying the filters on the ncRNA class and species names. The RNACentral consolidates data from several databases. While curating the dataset, the sequences with degenerate letters for the bases and ambiguous letters such as ‘N’ were removed. Sequences that repeated multiple times in the dataset were also removed to make them unique. A total of 5,26,552 sequences curated, is available as ncRNA_seqences.fa.tar.gz file.  
A dataset of 17, 026 mRNAs was curated to use as ‘others’ category in the training of classifier is available as mRNA_sequences.fa.tar.gz file. The mRNAs from 271 different e species were downloaded from PlantGDB database and were clustered at 50% identity cut-off using CD-hit program.

The different features calculated as described in the Materials and Methods section of the manuscript for ncRNAs, mRNAs and lncRNA sequences from PLncDB are available as  ncRNAs_features.tar.gz, mRNA_features.tar.gz and lncRNAs_PLncDB_features.tar.gz, respectively. 

Even though the overall dataset of ncRNAs used to train the classifier is diverse in terms of the taxa included, the data for lncRNAs comes only from two major groups: monocots and eudicots (Table 2). The limited availability of data from diverse taxonomic groups for the lncRNA class may cause the classifier to have limited predictive ability for lncRNAs. To test this, we curate an additional dataset of lncRNAs from four different species that were not included in the original training dataset. lncRNA sequences of M. pusilla and S. moellendorffii were downloaded from the GREENC database while that of G. sulphuraria and P. patens were from CANTATAdb. The sequences and prediction results are available in the file Test_Cases_lncRNAs.tar.gz
DOI: 10.17632/rz8t786st8.2
title: Simulation data of optimal control problems - Comparison of free-floating base and full-body dynamics for Trampoline Miller acrobatic

description: These folders contain the results of optimal control problems that predicts the motion of a trampoline Miller. It investigates the effect of equations of motion and optimal control problems formulations (explicit and implicit) to solve trampoline Miller optimal control problems with direct multiple shooting using Bioptim software. The performance of each OCP formulation and equation of motion is assessed through computational time, dynamic consistency, and cost function values.

Simulation data refers to the 100 simulations per optimal control problem (OCP) investigated with a different initial guess: Explicit formulation of the OCP with full-body dynamics,  Explicit formulation of the OCP with free-floating base dynamics, Implicit formulation of the OCP with full-body dynamics, Implicit formulation of the OCP with free-floating base dynamics, Implicit formulation of the OCP with full-body dynamics and generalized accelerations as states and jerks as controls, and Implicit formulation of the OCP with free-floating base dynamics and generalized accelerations as states and jerks as controls

"Effect of mesh points" refers to the 30 simulations per OCP investigated with a different initial guess while increasing the density of mesh points from 150 to 840. The implicit formulations were only considered:  Implicit formulation of the OCP with full-body dynamics, Implicit formulation of the OCP with free-floating base dynamics, Implicit formulation of the OCP with full-body dynamics and generalized accelerations as states and jerks as controls, and Implicit formulation of the OCP with free-floating base dynamics and generalized accelerations as states and jerks as controls.

Zip folders contain the raw data from each simulation in two formats, namely .pkl (python) and .bo (bioptim) and DataFrame Pickle files contain a pandas Dataframe which summarizes all the parameters and results of each simulation.

The code to process the data is available on the following repository:  https://github.com/Ipuch/OnDynamicsForSommersaults/
DOI: 10.17632/rmxkg6xr7z.1
title: LINF_260016800

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/5rhytvk9fh.1
title: Synthetic contact-tracing data from ETHAN Simulator  

description: A set of synthetic contact-tracing datasets generated using the ETHAN Simulator. Each simulation day is saved as a separate CSV file with name "encounters[day].csv" and "nodes[day].csv" where [day] is the simulation day. Encounters datasets contain the encounter data and the nodes datasets contain the status and personal information of each agent.  "district_graph.gpickle" keeps the district graph. The remaining files are for debugging purposes.
DOI: 10.5517/ccdc.csd.cc286nv0
title: CCDC 2091782: Experimental Crystal Structure Determination

description: Related Article: Andrea Pinto, Marcelo Echeverri, Berta Gómez-Lor, Laura Rodríguez|2022|Dyes Pigm.|202|110308|doi:10.1016/j.dyepig.2022.110308
DOI: 10.5517/ccdc.csd.cc28q258
title: CCDC 2106579: Experimental Crystal Structure Determination

description: Related Article: Manjunatha NK, Nabil Najib Alzubaidy, U. Likitha, M. Manjunatha, K. Saravanan, Krishna Reddy BV, Kannika BR, Ganesh Somashekarachar, Swamy MT, Siddaraju BP, P. Nagendra, Rajesha, Madan Kumar S|2022|J.Mol.Struct.|1263|133049|doi:10.1016/j.molstruc.2022.133049
DOI: 10.5517/ccdc.csd.cc284xkx
title: CCDC 2090099: Experimental Crystal Structure Determination

description: Related Article: Anna Ignaszak, Nigel Patterson, Connor O'Brien, Allison True, Mark R. J. Elsegood, Timothy J. Prior, Carl Redshaw|2022|RSC Advances|12|11672|doi:10.1039/D2RA01009G
DOI: 10.5517/ccdc.csd.cc29m4fj
title: CCDC 2133557: Experimental Crystal Structure Determination

description: Related Article: Matthew C. Scheepers, Manuel A. Fernandes, Andreas Lemmerer|2022|RSC Advances|12|11658|doi:10.1039/D2RA02057B
DOI: 10.5517/ccdc.csd.cc29m4gk
title: CCDC 2133558: Experimental Crystal Structure Determination

description: Related Article: Matthew C. Scheepers, Manuel A. Fernandes, Andreas Lemmerer|2022|RSC Advances|12|11658|doi:10.1039/D2RA02057B
DOI: 10.3886/e168846
title: Evaluating the efficacy of a learning trajectory for early shape composition

description: Although basing instruction on learning trajectories (LTs) is often recommended, there is little direct evidence regarding the premise of a LT approach—that instruction should be presented (only) one LT level beyond a child’s present level. We evaluated this hypothesis in the domain of early shape composition. One group of preschoolers, who were at least two levels below the target instructional LT level, received instruction based on an empirically-validated LT. The counterfactual, skip-levels, group received an equal amount of instruction focused only on the target level. At posttest, children in the LT condition exhibited significantly greater learning than children in the skip-levels condition, mainly on near-transfer items; no child-level variables were significant moderators. Implications for theory and practice are discussed.
description: Response Rates: 145 of original 152 were included.
description: All those for whom parental consent was obtained
description: Early childhood education. Smallest Geographic Unit: Mountain region of USA
description: face-to-face interview; Individual assessments.<br><br>Qualitative data was also collected/.
DOI: 10.3886/e168846v1
title: Evaluating the efficacy of a learning trajectory for early shape composition

description: Although basing instruction on learning trajectories (LTs) is often recommended, there is little direct evidence regarding the premise of a LT approach—that instruction should be presented (only) one LT level beyond a child’s present level. We evaluated this hypothesis in the domain of early shape composition. One group of preschoolers, who were at least two levels below the target instructional LT level, received instruction based on an empirically-validated LT. The counterfactual, skip-levels, group received an equal amount of instruction focused only on the target level. At posttest, children in the LT condition exhibited significantly greater learning than children in the skip-levels condition, mainly on near-transfer items; no child-level variables were significant moderators. Implications for theory and practice are discussed.
description: Response Rates: 145 of original 152 were included.
description: All those for whom parental consent was obtained
description: Early childhood education. Smallest Geographic Unit: Mountain region of USA
description: face-to-face interview; Individual assessments.<br><br>Qualitative data was also collected/.
DOI: 10.25345/c5jw86r6q
title: MassIVE MSV000089321 - Figure2a-c 042722 Unenriched Proteomics Across Sensitive and Resistant Cell Lines
title: Raw MS/MS files associated with Figure 2a-c. Basally sensitive and resistant cell lines were treated with 100 nM B508 for 3 hours, lysed and analyzed by unenriched proteomics.
DOI: 10.6084/m9.figshare.19668681
title: ST2 - Sm2-APM ATAC-seq TFEA

description: TFEA motifs from Sm2-APM ATAC-seq analysis
DOI: 10.6084/m9.figshare.19668681.v1
title: ST2 - Sm2-APM ATAC-seq TFEA

description: TFEA motifs from Sm2-APM ATAC-seq analysis
DOI: 10.6084/m9.figshare.19668687.v1
title: ST4 - Sm3-APM ATAC-seq TFEA

description: TFEA motifs from Sm3-APM ATAC-seq analysis
DOI: 10.6084/m9.figshare.19668687
title: ST4 - Sm3-APM ATAC-seq TFEA

description: TFEA motifs from Sm3-APM ATAC-seq analysis
DOI: 10.6084/m9.figshare.19668714
title: ST5 - Sm3-WSP ATAC-seq TFEA

description: TFEA motifs from Sm3-WSP ATAC-seq analysis
DOI: 10.6084/m9.figshare.19668714.v1
title: ST5 - Sm3-WSP ATAC-seq TFEA

description: TFEA motifs from Sm3-WSP ATAC-seq analysis
DOI: 10.6084/m9.figshare.19668717
title: ST3 - Sm2-WSP ATAC-seq TFEA

description: TFEA motifs from Sm2-WSP ATAC-seq analysis
DOI: 10.6084/m9.figshare.19668717.v1
title: ST3 - Sm2-WSP ATAC-seq TFEA

description: TFEA motifs from Sm2-WSP ATAC-seq analysis
DOI: 10.6084/m9.figshare.19668675
title: ST1 - qRT-PCR primers

description: qRT-PCR primer sequences used to quantify total RNA.
DOI: 10.6084/m9.figshare.19668675.v1
title: ST1 - qRT-PCR primers

description: qRT-PCR primer sequences used to quantify total RNA.
DOI: 10.18739/a2t14tq8p
title: Effects of soil warming and thermokarst on soil microbial communities in the High Canadian Arctic, 2005-2021.

description: Soil microbes are not only key drivers for nutrient and energy cycles, but they are also fast responders to changes in their environment- and as such act as bioindicators of climate change. The temperatures in the Arctic are warming two times faster than at lower latitudes and lead to warming of permafrost soils, an increase of the active layer and eventually to thermokarst, the thawing of permafrost. Thawing permafrost affects the hydrological systems and increases the potential of old carbon becoming available for decomposition. The fate of carbon stores will rest largely on the response of plant and microbial communities to the changed conditions. Especially the ice rich permafrost soils in the High Arctic are highly sensitive to increasing air temperatures, because the permafrost occurs close to the surface and the soils lack the insulation provided by a thick vegetation cover and organic soil horizons as found in the Low Arctic (Farquharson et al. 2019). This study examines the effects of soil warming and thermokarst on fungal and bacterial communities of active layer soils in the three most northern bioclimatic subzones (A, B, C) of the Arctic that occurred over 10 years (2005-2016). We used Illumina sequencing to analyze the fungal and bacterial communities and obtained environmental data to investigate the effect of warming and thermokarst on fungal and bacterial communities in the High Arctic. Here we present the assembled fungal, bacterial and environmental data sets.
DOI: 10.6073/pasta/2d8170cf7ebc1a6b2c43169d02b2ae2e
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at NPP T-TAYL met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This is an ONGOING dataset.
DOI: 10.6073/pasta/132f82faf9e58e129f198ac80bd40587
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP T-TAYL met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.5281/zenodo.10250347
title: RESULTS OF TREATMENT OF PURULENT SOFT TISSUE DISEASES ON AN OUTPATIENT BASIS
DOI: 10.5281/zenodo.10250348
title: RESULTS OF TREATMENT OF PURULENT SOFT TISSUE DISEASES ON AN OUTPATIENT BASIS
DOI: 10.6073/pasta/d0c56bbc36eb6db41204ecd0d0fe63f3
title: Jornada Basin LTER: Wireless meteorological station at NPP T-WEST site: 5-minute summary wind and air temperature data: 2013 - ongoing

description: 5-minute summary data at NPP T-WEST met station. Average air temperature, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at T-WEST 3m, and air temperature at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.24715644
title: Data for Ma et al "pH-dependent Subcritical Crack Growth in Granite and Prediction of Subcritical Crack Growth Index Based on Dissolution Kinetics"

description: Experimental data from double torsion fracture mechanics testing of Zhangzhou granite under environments of varying fluid pH values (1-14). This data includes K-V curves, fracture toughness, critical stress intensity, subcritical fracture growth index, rock dissolution rate and prediction curves of subcritical crack growth index.
DOI: 10.6084/m9.figshare.24715644.v1
title: Data for Ma et al "pH-dependent Subcritical Crack Growth in Granite and Prediction of Subcritical Crack Growth Index Based on Dissolution Kinetics"

description: Experimental data from double torsion fracture mechanics testing of Zhangzhou granite under environments of varying fluid pH values (1-14). This data includes K-V curves, fracture toughness, critical stress intensity, subcritical fracture growth index, rock dissolution rate and prediction curves of subcritical crack growth index.
DOI: 10.6073/pasta/883c2dc38fc61a5e2ca48013f267347a
title: Jornada Basin LTER: Wireless meteorological station at NPP T-WEST site: 1-hour summary data: 2013 - ongoing

description: Hourly summary data at NPP T-WEST met station. Average/maximum/minimum air temperature; average relative humidity and wind direction; average/maximum wind speed. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-WEST site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.34740/kaggle/dsv/7103368
title: Contrastive Language Image Pretraining by openai
DOI: 10.5519/qd.ob4mc5fl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6073/pasta/adb0a0e1198a729e66f020b74a8905ec
title: Jornada Basin LTER: Wireless meteorological station at NPP T-WEST site: 30-minute summary data: 2013 - ongoing

description: 30-minute summary data at NPP T-WEST met station. Average air temperature, relative humidity, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-WEST site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/7f0a5d11586b9d628e1b99382499c5e8
title: Jornada Basin LTER: Wireless meteorological station at NPP T-WEST site: Daily summary data: 2013 - ongoing

description: Daily summary data at NPP T-WEST met station. Average/maximum/minimum air temperature; average/maximum relative humidity and wind speed and average wind direction. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-WEST site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.5281/zenodo.10250445
title: THE EFFECTS OF PHYSICO-CHEMICAL METHODS OF WOUND HEALING ON THE RESISTANCE OF THE MICROFLORA OF PURULENT WOUNDS
DOI: 10.5281/zenodo.10250446
title: THE EFFECTS OF PHYSICO-CHEMICAL METHODS OF WOUND HEALING ON THE RESISTANCE OF THE MICROFLORA OF PURULENT WOUNDS
DOI: 10.6073/pasta/ace3ca88412e569f63a2ed4146ef7475
title: Jornada Basin LTER: Wireless meteorological station at NPP T-WEST site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at NPP T-WEST met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes at an automated meteorological station installed at Jornada LTER NPP T-WEST site. Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This is an ONGOING dataset.
DOI: 10.6073/pasta/579bdf2a14616bab6bbe082f34957e65
title: Jornada Basin LTER: Wireless meteorological station at NPP T-WEST site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP T-WEST met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP T-WEST site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.6073/pasta/5d75021966b40247ba1e2109216af4f2
title: Jornada Basin LTER: Wireless substation at NPP C-CALI site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data is measured at 10cm, 20 cm, and 30 cm soil depths at the NPP T-WEST substation located in center of 70m x 70m Jornada LTER NPP T-WEST site. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes. This is an ONGOING dataset.
DOI: 10.5281/zenodo.10250463
title: PRIVATE ENTREPRENEURSHIP AND PRIVATE BUSINESS DEVELOPMENT
DOI: 10.5281/zenodo.10250462
title: PRIVATE ENTREPRENEURSHIP AND PRIVATE BUSINESS DEVELOPMENT
DOI: 10.34683/sr854
title: StoneRounds Case: SR854
title: AD Retinitis Pigmentosa

description: StoneRounds Case SR854 was diagnosed with AD Retinitis Pigmentosa likely caused by mutations in the gene: PRPF8.
DOI: 10.6073/pasta/b7959661182494e8d7cf5e1656b11e90
title: Jornada Basin LTER: Wireless substation at NPP C-GRAV site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data is measured at 10cm, 20 cm, and 30 cm soil depths at the NPP C-GRAV substation located in center of 70m x 70m Jornada LTER NPP C-GRAV site. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes. This is an ONGOING dataset.
DOI: 10.15151/esrf-es-1317772928
title: Macromolecular Crystallography in Bordeaux/Lyon/Toulouse IECB IBGC CBMN / IBCP-MMSB ICBMS / IPBS

description: The different research teams who are part of this BAG are located in Bordeaux, Lyon and Toulouse. They are mainly working on worldwide health concerns or biotechnological relevant projects. In more details, infectiology, molecular assemblies, biosynthetic pathways or glycobiology are their main research axises. Important results have been obtained so far regarding the development of new therapeutic strategies against several infectious diseases or regarding plastic bioremediation. In order to go further into details of all these studies, access to ESRF facilities is a requirement.
DOI: 10.15151/esrf-es-1415105049
title: Fast Access Beamtime (FAB!) Allocation request

description: We propose to host 12 shifts per session for timely measurements on important or topical subjects. It is intended that these measurements will be of the type 'one last datapoint', syntheses, or tests of unusual assembly configurations that have either followed a previous proposal, or will have a follow-up publication or submission. Due to the time constraints, they will be limited in terms of safety considerations and allocated to periods of similar experimental setups.