cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.45n4qw
title: Occurrence Download

description: A dataset containing 483 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calliandra bella (Mart. ex Spreng.) Benth."
 ]
}

 The dataset includes 483 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002091-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrtqgh
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Sturnus vulgaris Linnaeus, 1758"
 ]
}

 The dataset includes 130 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002092-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uce7fc
title: Occurrence Download

description: A dataset containing 19465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senecio madagascariensis Poir.",
 "Country is Australia",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 19465 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002093-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5p2md
title: Occurrence Download

description: A dataset containing 2245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna obtusifolia (L.) H.S.Irwin & Barneby",
 "Country is Australia",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 2245 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002095-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jzq8ha
title: Occurrence Download

description: A dataset containing 35377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Estrilda astrild (Linnaeus, 1758)"
 ]
}

 The dataset includes 35377 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002097-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ka9h9f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Setaria helvola (L.f.) Roem. & Schult.",
 "Country is New Zealand",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002099-250221090833381/datasets/export for details.
DOI: 10.15468/dl.v33h2a
title: Occurrence Download

description: A dataset listing the 92 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Antarctic Marine Species Sequence Data"
 ]
}

 The dataset's 92 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002096-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9wqukq
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Living Specimen, Specimen, Fossil, Material citation, Material sample, Machine Observation)"
 ]
 }
 },
 "TaxonKey is Chenopodium quinoa Willd.",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 270 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002098-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28193483.v3
title: <b>Management solutions to handle the global-scale reactive nitrogen crisis</b>

description: <b>Abstract</b>The global reactive nitrogen (Nr) crisis presents a pressing challenge, requiring practices that balance Nr losses and crop productivity. Here, we evaluate the effect of 14 common management practices on Nr losses and crop productivity by reviewing 146 available meta-analyses and conduct a second-order meta-analysis based on 6382 unique primary studies comprising 20,167 paired observations. Results show that while most practices involve trade-offs or insufficient evidence, applications of enhanced-efficiency fertilizers, reduced nitrogen inputs, optimized fertilization methods, and biochar amendments consistently achieve ‘win-win’ outcomes by mitigating Nr losses (N₂O, NO, NH₃ emissions, and leaching/runoff) and improving crop productivity (nitrogen use efficiency, nitrogen uptake, and crop yield). By quantifying the average effect and go beyond qualitative information, we reveal the list of ‘win-win’ practices that facilitate global movements commensurate with reactive nitrogen crisis while trade-offs could be minimized.<b>Keywords</b>: Reactive nitrogen; Second-order meta-analysis, Nitrogen mitigation, Crop productivity, Sustainable agriculture
DOI: 10.15468/dl.pjpe8a
title: Occurrence Download

description: A dataset containing 252144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odocoileus virginianus (Zimmermann, 1780)"
 ]
}

 The dataset includes 252144 records from 402 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002094-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4cbzqu
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum tampicense Dunal",
 "Country is United States of America",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 88 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002101-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7d9j9
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Viviendo en los Andes: registros notables de la distribución altitudinal del oso andino, Tremarctos ornatus (Ursidae) en Boyacá, Colombia"
 ]
}

 The dataset includes 23 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002103-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqpn9m
title: Occurrence Download

description: A dataset containing 1189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum viarum Dunal",
 "Country is United States of America",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1189 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002105-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.va7ewh
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Living Specimen, Specimen, Fossil, Material citation, Material sample, Machine Observation)"
 ]
 }
 },
 "TaxonKey is Chenopodium quinoa Willd.",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 270 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002102-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14905715
title: FutureCISI: Future projections on critical infrastructure developments and economic assets

description: Europe’s critical infrastructure (CI) faces rising exposure to coastal flooding. This study develops spatially explicit future scenarios for CI exposure across five Shared Socioeconomic Pathways (SSPs) for 2030, 2050, and 2100. Future infrastructure density (FutureCISI) is estimated using a regression model linking population with the infrastructure density index. Validation yields a root mean square error (RMSE) of 0.03. Almost all projections showed an increase in urban areas within coastal regions. While the FutureCISI dataset is subject to uncertainties from the SSPs, the population projections and the regression model’s limitations, it provides the best available estimate of future infrastructure exposure, supporting long-term risk assessment and planning under different development trajectories.
DOI: 10.5281/zenodo.14905714
title: FutureCISI: Future projections on critical infrastructure developments and economic assets

description: Europe’s critical infrastructure (CI) faces rising exposure to coastal flooding. This study develops spatially explicit future scenarios for CI exposure across five Shared Socioeconomic Pathways (SSPs) for 2030, 2050, and 2100. Future infrastructure density (FutureCISI) is estimated using a regression model linking population with the infrastructure density index. Validation yields a root mean square error (RMSE) of 0.03. Almost all projections showed an increase in urban areas within coastal regions. While the FutureCISI dataset is subject to uncertainties from the SSPs, the population projections and the regression model’s limitations, it provides the best available estimate of future infrastructure exposure, supporting long-term risk assessment and planning under different development trajectories.
DOI: 10.5281/zenodo.14913714
title: Two approaches to mass closure analysis for carbon-rich aerosol in Metro Manila, Philippines

description: Measurement data (PM2.5 mass and chemical composition, particle number size distribution, particle mass size distribution, and meteorological data) are provided for the paper 'Two Approaches to Mass Closure Analysis for Carbon-Rich Aerosol in Metro Manila, Philippines.'
DOI: 10.5281/zenodo.14913715
title: Two approaches to mass closure analysis for carbon-rich aerosol in Metro Manila, Philippines

description: Measurement data (PM2.5 mass and chemical composition, particle number size distribution, particle mass size distribution, and meteorological data) are provided for the paper 'Two Approaches to Mass Closure Analysis for Carbon-Rich Aerosol in Metro Manila, Philippines.'
DOI: 10.5281/zenodo.14913563
title: Exploring the incorporation of ketoacid building blocks in teicoplanin biosynthesis - MD simulations

description: This record contains classical MD simulations discussed in manuscritpt "Exploring the incorporation of ketoacid building blocks in teicoplanin biosynthesis" by M.S. Ratnayake et al. All the simulations were performed in Amber22. The details of the simulations are given in the accompanying manuscript. The trajectories are in Amber NetCDF format and are stripped of most water and ions to save space. The frames filtered according to the criteria specified in the manuscript are also included.



adenylation.zip contains simulations relevant to adenylation of L-Hpg and Hpk substrates

postadenylation.zip contains simulations relevant to hydrolysis of adenylated substrates

thioestrification contains simulations relevant to loading of L-Hpg and Hpk onto phosphopatetheine
DOI: 10.5281/zenodo.14913564
title: Exploring the incorporation of ketoacid building blocks in teicoplanin biosynthesis - MD simulations

description: This record contains classical MD simulations discussed in manuscritpt "Exploring the incorporation of ketoacid building blocks in teicoplanin biosynthesis" by M.S. Ratnayake et al. All the simulations were performed in Amber22. The details of the simulations are given in the accompanying manuscript. The trajectories are in Amber NetCDF format and are stripped of most water and ions to save space. The frames filtered according to the criteria specified in the manuscript are also included.



adenylation.zip contains simulations relevant to adenylation of L-Hpg and Hpk substrates

postadenylation.zip contains simulations relevant to hydrolysis of adenylated substrates

thioestrification contains simulations relevant to loading of L-Hpg and Hpk onto phosphopatetheine
DOI: 10.6084/m9.figshare.28193483.v4
title: <b>Management solutions to handle the global-scale reactive nitrogen crisis</b>

description: <b>Abstract</b>The global reactive nitrogen (Nr) crisis presents a pressing challenge, requiring practices that balance Nr losses and crop productivity. Here, we quantitatively synthesize the effect of 14 common management practices on Nr losses and crop productivity by reviewing 146 available meta-analyses and conduct a second-order meta-analysis based on 6382 unique primary studies comprising 20,167 paired observations. We identify four globally scalable ‘win-win’ practices: enhanced-efficiency fertilizers, reduced nitrogen inputs, optimized fertilization methods, and biochar amendments. These practices mitigate Nr losses—reducing N₂O (-12–35%), NO (-22–35%), NH₃ (-20–40%), and leaching or runoff (-18–27%)—while enhancing nitrogen use efficiency (23–71%), uptake (9–21%), and crop yield (9–15%). By quantifying synergistic benefits across diverse agroecosystems, our findings facilitate global movements commensurate with the reactive nitrogen crisis without compromising food security.<b>Keywords</b>: Reactive nitrogen; Second-order meta-analysis, Nitrogen mitigation, Crop productivity, Sustainable agriculture<br><br><br><b>1. Dataset.xlsx</b>Contains the whole dataset used for the study.<b>2. Figure1_Xu.rmd</b>R Markdown file for generating Figure 1.<b>3. Fig1_Data_2.tsv</b>Data file in TSV format used for Figure 1.<b>4. Fig1_Data_1.xlsx</b>Another dataset supporting Figure 1.<b>5. Figure2_Xu.rmd</b>R Markdown file for generating Figure 2.<b>6. Fig2_Data.xlsx</b>Data file supporting Figure 2.<b>7. Figure3_Xu.rmd</b>R Markdown file for generating Figure 3.<b>8. Fig3_Data.xlsx</b>Data file for Figure 3.<b>9. Unique Primary Studies.xlsx</b>A collection of primary studies referenced in the research.<b>10. Model_Result_Example.html</b>An HTML output file displaying the results of the meta-analysis.Contains model summaries and statistical outputs.For any additional requests, please contact <b>Shengwen Xu (shengwenxu@outlook.com)</b>.
DOI: 10.15468/dl.8nabq6
title: Occurrence Download

description: A dataset containing 163 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solidago canadensis L.",
 "Country is China",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 163 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002106-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcua7d
title: Occurrence Download

description: A dataset containing 49231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solidago gigantea Aiton",
 "Country is France",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 49231 records from 428 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002108-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mauj8z
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Laggera aurita",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057611-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u82bwd
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rungia brandisii"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057612-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30294511
title: raman mixtures

description: raman mixtures from mol2raman
DOI: 10.6084/m9.figshare.30294511.v1
title: raman mixtures

description: raman mixtures from mol2raman
DOI: 10.15468/dl.wsvbk9
title: Occurrence Download

description: A dataset containing 217465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation, Material sample, Material citation, Occurrence evidence)",
 "GadmGid is IND.4.15_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 217465 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057565-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fb2wr
title: Occurrence Download

description: A dataset containing 1933 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-65.11756 -9.43521,-69.44896 -11.80717,-69.13957 -18.61366,-67.48951 -22.7388,-63.15811 -22.53255,-61.40493 -25.72953,-62.53934 -30.88596,-66.25197 -31.71099,-65.42694 -38.31122,-57.38291 -38.41435,-58.10481 -31.71099,-53.67028 -23.56383,-55.83598 -17.99489,-58.51733 -11.1884,-65.11756 -9.43521))",
 "Geometry POLYGON((-46.1419 -1.28806,-47.68882 -6.44449,-46.5328 -9.05717,-47.07005 -17.27299,-43.2543 -16.9636,-39.33541 -18.09802,-38.81942 -16.13531,-38.58907 -13.02554,-36.97659 -11.15391,-35.4505 -9.45506,-34.62292 -8.66182,-35.01827 -5.1531,-36.74792 -4.65892,-39.76245 -2.63275,-42.97466 -2.38566,-46.1419 -1.28806))",
 "Geometry POLYGON((-82.83284 9.68535,-83.07226 8.8474,-82.86277 8.33864,-81.7854 7.77002,-80.97737 7.4109,-79.9 7.32112,-80.25912 8.24886,-79.42117 8.81747,-79.54088 9.53572,-80.94744 8.8474,-82.1146 8.93718,-82.83284 9.68535))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sarcomphalus joazeiro"
 ]
}

 The dataset includes 1933 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057614-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2jjed
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((0 0,30 0,30 30,0 30,0 0))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057616-250920141307145/datasets/export for details.
DOI: 10.15468/dl.ndj2ff
title: Occurrence Download

description: A dataset containing 38327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Celtis australis",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 38327 records from 325 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057613-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrh6a2
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyprinus carpio x Procypris rabaudi"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057615-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wp655u
title: Occurrence Download

description: A dataset containing 1018 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Geometry POLYGON((5.52193 52.8846,6.07583 52.8846,6.07583 53.29111,5.52193 53.29111,5.52193 52.8846))",
 "OccurrenceStatus is Present",
 "TaxonKey is Aeshna viridis",
 "Year 2015-2025"
 ]
}

 The dataset includes 1018 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057618-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.y63fwv36
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (142 records)
DOI: 10.15468/dl.ny8mja
title: Occurrence Download

description: A dataset containing 5791 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neogobius fluviatilis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5791 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057619-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30294499
title: Water resoueces data

description: This dataset is the relevant data from my research on water environment carrying capacity.
DOI: 10.6084/m9.figshare.30294499.v1
title: Water resoueces data

description: This dataset is the relevant data from my research on water environment carrying capacity.