cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6957455.v1
title: Experiment Data

description: Samples obtained in the experiments<br>
DOI: 10.6084/m9.figshare.6957431
title: NPI-012-Segmented-Oil

description: Segmented oil phase for image: NPI-006-Filtered Segmentation performed using Watershed segmentation in Avizo. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6957428
title: NPI-012-Filtered

description: Filtered using Non-local means filter in Avizo software. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6957434.v1
title: NPI-012-Segmented-Water

description: Segmented water phase for image: NPI-012-Filtered Segmentation performed using Watershed segmentation in Avizo. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6957431.v1
title: NPI-012-Segmented-Oil

description: Segmented oil phase for image: NPI-006-Filtered Segmentation performed using Watershed segmentation in Avizo. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6957425
title: NPI-006-Segmented-Water

description: Segmented water phase for image: NPI-006-Filtered Segmentation performed using Watershed segmentation in Avizo. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6957428.v1
title: NPI-012-Filtered

description: Filtered using Non-local means filter in Avizo software. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6957422
title: NPI-006-Segmented-Oil

description: Segmented oil phase for image: NPI-006-Filtered Segmentation performed using Watershed segmentation in Avizo. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6957425.v1
title: NPI-006-Segmented-Water

description: Segmented water phase for image: NPI-006-Filtered Segmentation performed using Watershed segmentation in Avizo. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6957419
title: NPI-006-Filtered

description: Filtered using Non-local means filter in Avizo software. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6957419.v1
title: NPI-006-Filtered

description: Filtered using Non-local means filter in Avizo software. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6957422.v1
title: NPI-006-Segmented-Oil

description: Segmented oil phase for image: NPI-006-Filtered Segmentation performed using Watershed segmentation in Avizo. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6957401
title: Dataset of six IDF files of 15-story buildings with urban context from São Paulo Brazil

description: This dataset consists of six IDF 15-story buildings with commerce in the ground floor level and residential apartments in the remaining floors. The buildings are integrated in urban context for shadowing and reflection from surroundings. The buildings were automatically generated using EPSAP algorithm that is being developed under Ren4EEnIEQ project (http://www.adai.pt/ren4eenieq/). The files a prepared to run in EnergyPlus v8.9.0 (http://www.energyplus.net) with weather data of São Paulo, Brazil.
DOI: 10.6084/m9.figshare.6957368
title: DFT study of the polycondensation and ring-opening polymerisation of novel limonene-derived lactone and bifunctional alcohol/carboxylic acid monomers

description: Data to support article: New renewably-sourced polyesters from limonene-derived monomers <br> DOI: 10.6084/m9.figshare.6957368 Journal: Green Chemistry, 2018, DOI: 10.1039/C8GC02957A Authors: <i>Megan R. Thomsett,a Jonathan C. Moore,a Antoine Buchard,b Robert A. Stockman*a and Steven M. Howdle*<br><br></i><i>a. School of Chemistry, University Park, University of Nottingham, Nottingham, NG7 2RD, UK. E-mail: robert.stockman@nottingham.ac.uk; Fax: +44 (0)115 951356<br></i><i>b. Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK <br></i><i><br></i>DFT study: - The DFT optimised geometries and computed free enthalpies of various limonene derived alcohol-carboxylic acids and their different possible dimers formed by polycondensation, as well as a related lactone and its ring-opened products. - The thermochemistry of the reaction of lactonisation of alcohol/carboxylic acid 6a.- The thermochemistry of the ring-opening of lactone 4 by benzyl alcohol.- The thermochemistry of the isodesmic reaction between lactone 4 and isopropylisopropanoate.- The thermochemistry of the condensation (all combination possible) between bifunctional alcohol/carboxylic acid 6a and 6b, to yield a dimeric ester, as a model for polymerisation.<br> Protocol: rM06-2X/6-311++g(2d,p)/cpcm=ethylethanoate/T=298.15K or 453.15K<br> <br>Content: - Gaussian09 rev D.01 output files<br>- Computational_full_details_and_results.pdf<br>
DOI: 10.6084/m9.figshare.6957335
title: BIDS-Processed Data Survey responses

description: Responses from the BIDS-Processed Data Survey<br>A summary of the results can be found here: http://reproducibility.stanford.edu/bids-processed-data-survey-results/<br>
DOI: 10.6084/m9.figshare.6957368.v1
title: DFT study of the polycondensation and ring-opening polymerisation of novel limonene-derived lactone and bifunctional alcohol/carboxylic acid monomers

description: Data to support article: New renewably-sourced polyesters from limonene-derived monomers <br> DOI: 10.6084/m9.figshare.6957368 Journal: Green Chemistry, 2018, DOI: 10.1039/C8GC02957A Authors: <i>Megan R. Thomsett,a Jonathan C. Moore,a Antoine Buchard,b Robert A. Stockman*a and Steven M. Howdle*<br><br></i><i>a. School of Chemistry, University Park, University of Nottingham, Nottingham, NG7 2RD, UK. E-mail: robert.stockman@nottingham.ac.uk; Fax: +44 (0)115 951356<br></i><i>b. Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK <br></i><i><br></i>DFT study: - The DFT optimised geometries and computed free enthalpies of various limonene derived alcohol-carboxylic acids and their different possible dimers formed by polycondensation, as well as a related lactone and its ring-opened products. - The thermochemistry of the reaction of lactonisation of alcohol/carboxylic acid 6a.- The thermochemistry of the ring-opening of lactone 4 by benzyl alcohol.- The thermochemistry of the isodesmic reaction between lactone 4 and isopropylisopropanoate.- The thermochemistry of the condensation (all combination possible) between bifunctional alcohol/carboxylic acid 6a and 6b, to yield a dimeric ester, as a model for polymerisation.<br> Protocol: rM06-2X/6-311++g(2d,p)/cpcm=ethylethanoate/T=298.15K or 453.15K<br> <br>Content: - Gaussian09 rev D.01 output files<br>- Computational_full_details_and_results.pdf<br>
DOI: 10.6084/m9.figshare.6957335.v1
title: BIDS-Processed Data Survey responses

description: Responses from the BIDS-Processed Data Survey<br>A summary of the results can be found here: http://reproducibility.stanford.edu/bids-processed-data-survey-results/<br>
DOI: 10.6084/m9.figshare.6957197
title: Analyzed HEK293, K562, and HCT116 Repair Outcomes

description: Here are all analyzed files and scripts used to analyze previously published DNA repair data form VanOverbeek et al 2016.
DOI: 10.6084/m9.figshare.6957155
title: FiveDreamers_H264.mp4

description: Five Dreamers is a documentary film that explores DACA and some of the individuals directly impacted by it.<br>Denverite Article:https://denverite.com/2018/07/03/colorado-filmmakers-hope-to-change-the-perception-of-americas-dreamers/<br>
DOI: 10.6084/m9.figshare.6957131
title: ADEON Marine Mammal Observation Logs

description: The Marine Mammal Observation (MMO) database it is a record of marine mammals and turtles sighted during daylight hours at each ADEON lander location (link to map). On-station effort commenced approximately 5 nautical miles prior to arrival at the lander location when the ship slowed its speed to below 8 knots. MMO effort concluded at approximately 5 nautical miles from the lander location before the ship increased speed above 8 knots. Opportunistic sightings from night time hours occurred when animals were visible around the lighted decks. These sightings are included in the MMO but are not included in the on-effort daily calculations.
DOI: 10.6084/m9.figshare.6957131.v1
title: ADEON Marine Mammal Observation Logs

description: The Marine Mammal Observation (MMO) database it is a record of marine mammals and turtles sighted during daylight hours at each ADEON lander location (link to map). On-station effort commenced approximately 5 nautical miles prior to arrival at the lander location when the ship slowed its speed to below 8 knots. MMO effort concluded at approximately 5 nautical miles from the lander location before the ship increased speed above 8 knots. Opportunistic sightings from night time hours occurred when animals were visible around the lighted decks. These sightings are included in the MMO but are not included in the on-effort daily calculations.
DOI: 10.6084/m9.figshare.6957125
title: Analyzed T-Cell DNA Repair Outcomes

description: Contained within are all analyzed filesets for the T-Cell repair data including:<br>Counts of each individual DNA repair outcomePDF images of each DNA repair siteMutation efficiency of each targeted siteTable of all inserted sequences<br>R code used to generate all files from the raw .fastq reads
DOI: 10.6084/m9.figshare.6957131.v4
title: ADEON Marine Mammal Observation Logs

description: The Marine Mammal Observation (MMO) database it is a record of marine mammals and turtles sighted during daylight hours at each ADEON lander location (link to map). On-station effort commenced approximately 5 nautical miles prior to arrival at the lander location when the ship slowed its speed to below 8 knots. MMO effort concluded at approximately 5 nautical miles from the lander location before the ship increased speed above 8 knots. Opportunistic sightings from night time hours occurred when animals were visible around the lighted decks. These sightings are included in the MMO but are not included in the on-effort daily calculations.
DOI: 10.6084/m9.figshare.6957131.v3
title: ADEON Marine Mammal Observation Logs

description: The Marine Mammal Observation (MMO) database it is a record of marine mammals and turtles sighted during daylight hours at each ADEON lander location (link to map). On-station effort commenced approximately 5 nautical miles prior to arrival at the lander location when the ship slowed its speed to below 8 knots. MMO effort concluded at approximately 5 nautical miles from the lander location before the ship increased speed above 8 knots. Opportunistic sightings from night time hours occurred when animals were visible around the lighted decks. These sightings are included in the MMO but are not included in the on-effort daily calculations.
DOI: 10.6084/m9.figshare.6957119
title: Master README

description: Here is a short README on the uploaded data.
DOI: 10.6084/m9.figshare.6955379
title: Table S2. Genes list from Stress and early experience underlie dominance status and division of labour in a clonal insect

description: The 100 genes that were differentially expressed between heads of subordinate and dominant workers of the ant Platythyrea punctata.
DOI: 10.6084/m9.figshare.6955379.v1
title: Table S2. Genes list from Stress and early experience underlie dominance status and division of labour in a clonal insect

description: The 100 genes that were differentially expressed between heads of subordinate and dominant workers of the ant Platythyrea punctata.
DOI: 10.6084/m9.figshare.6955370
title: Skewed temperature dependence affects range and abundance in a warming world (Code)

description: These codes were produced by Amy Hurford (ahurford@mun.ca) and Christina Cobbold.<br><br>Below is a list of all the figures in the manuscript paired with the code that produces them. These codes run on MATLAB. Import sections of code are repeated across files with small changes.<br><br>Figure 1 - Figure1_Defins.m (dependency on subtightplot.m)<br>Figure 2 - Figure2_Niches.m<br>Figure 3 - Figure3_DensitySkewness.m (dependency on subtightplot.m)<br>Figure 4 - Figure4_MainResults.m (dependency on EffectOf.m)<br>Figures S1 and S2 - FigureS1_S2.m<br>Figures S3-S5 - FiguresS3S4S5.m<br>Figure S6 - FigureS6_ExtinctionDebt.m<br>Figure S7 - FigureS7_Dispersal.m (dependency on EffectOfD.m)<br>Figure S8 - FigureS8_AssymetricDispersal.m (dependency on EffectOf3.m)<br>Figure S9, S10 and S12 - Figure4_MainResults.m (dependency on EffectOf.m)<br>Figure S11 - FigureS11_CCEliminatesCycles.m<br>Figures S13 and S14 - FiguresS13S14_Stochastic.m (depency on EffectOfS.m)<br>——————————<br>EffectOf.m - performs the calculations for Figure4_MainResults.m<br>EffectOfD.m - performs the calculations for FigureS7_Dispersal.m<br>EffectOf3.m - performs the calculations for FigureS8_AssymetricDispersal.m <br>EffectOfS.m - performs the calculations for FiguresS13S14_Stochastic.m<br>subtightplot.m - controls the spacing of subpanels in plots.<br>
DOI: 10.6084/m9.figshare.6955370.v1
title: Skewed temperature dependence affects range and abundance in a warming world (Code)

description: These codes were produced by Amy Hurford (ahurford@mun.ca) and Christina Cobbold.<br><br>Below is a list of all the figures in the manuscript paired with the code that produces them. These codes run on MATLAB. Import sections of code are repeated across files with small changes.<br>.<br>Figure 1 - Figure1_Defins.m (dependency on subtightplot.m)<br>Figure 2 - Figure2_Niches.m<br>Figure 3 - Figure3_DensitySkewness.m (dependency on subtightplot.m)<br>Figure 4 - Figure4_MainResults.m (dependency on EffectOf.m)<br>Figure S1 - FigureS1_RangeEffect.m<br>Figure S2 - FigureS2_ExtinctionDebt.m<br>Figure S3 - FigureS3_Dispersal.m(dependency on EffectOfD.m)<br>Figure S4 and S5 - Figure4_MainResults.m (dependency on EffectOf.m)<br>Figure S6 - FigureS6_CCEliminatesCycles.m<br>——————————<br>EffectOf.m - performs the calculations for Figure4_MainResults.m<br>EffectOfD.m - performs the calculations for FigureS4_Dispersal.m<br>subtightplot.m - controls the spacing of subpanels in plots.
DOI: 10.6084/m9.figshare.6955370.v2
title: Skewed temperature dependence affects range and abundance in a warming world (Code)

description: These codes were produced by Amy Hurford (ahurford@mun.ca) and Christina Cobbold.<br><br>Below is a list of all the figures in the manuscript paired with the code that produces them. These codes run on MATLAB. Import sections of code are repeated across files with small changes.<br>.<br>Figure 1 - Figure1_Defins.m (dependency on subtightplot.m)<br>Figure 2 - Figure2_Niches.m<br>Figure 3 - Figure3_DensitySkewness.m (dependency on subtightplot.m)<br>Figure 4 - Figure4_MainResults.m (dependency on EffectOf.m)<br>Figure S1 - FigureS1_RangeEffect.m<br>Figure S2 - FigureS2_ExtinctionDebt.m<br>Figure S3 - FigureS3_Dispersal.m(dependency on EffectOfD.m)<br>Figure S4 and S5 - Figure4_MainResults.m (dependency on EffectOf.m)<br>Figure S6 - FigureS6_CCEliminatesCycles.m<br>——————————<br>EffectOf.m - performs the calculations for Figure4_MainResults.m<br>EffectOfD.m - performs the calculations for FigureS4_Dispersal.m<br>subtightplot.m - controls the spacing of subpanels in plots.
DOI: 10.6084/m9.figshare.6955370.v3
title: Skewed temperature dependence affects range and abundance in a warming world (Code)

description: These codes were produced by Amy Hurford (ahurford@mun.ca) and Christina Cobbold.<br><br>Below is a list of all the figures in the manuscript paired with the code that produces them. These codes run on MATLAB. Import sections of code are repeated across files with small changes.<br>.<br>Figure 1 - Figure1_Defins.m (dependency on subtightplot.m)<br>Figure 2 - Figure2_Niches.m<br>Figure 3 - Figure3_DensitySkewness.m (dependency on subtightplot.m)<br>Figure 4 - Figure4_MainResults.m (dependency on EffectOf.m)<br>Figures S1 and S2 - FigureS1_S2.m<br>Figure S3 - FigureS3_ExtinctionDebt.m<br>Figure S4 - FigureS4_Dispersal.m (dependency on EffectOfD.m)<br>Figure S5 - FigureS5_AssymetricDispersal.m (dependency on EffectOf3.m)<br>Figure S6, S7 and S9 - Figure4_MainResults.m (dependency on EffectOf.m)Figure S8 - FigureS8_CCEliminatesCycles.mFigures S10 and S11 - FiguresS10S11_Stochastic.m (depency on EffectOfS.m)<br>——————————<br>EffectOf.m - performs the calculations for Figure4_MainResults.m<br>EffectOfD.m - performs the calculations for FigureS4_Dispersal.mEffectOf3.m - performs the calculations for FigureS5_AssymetricDispersal.m <br>EffectOfS.m - performs the calculations for FiguresS10S11_Stochastic.msubtightplot.m - controls the spacing of subpanels in plots.
DOI: 10.6084/m9.figshare.6955142
title: Kamoske et al 2018 -- SERC Hemispherical Photographs and Associated Shapefile

description: Hemispherical photographs and locations (shapefile) associated with:<br><em></em><em><br></em><em>Kamoske A.G., Dahlin K.M., Stark S.C., and Serbin S.P. 2018. Leaf area density from airborne LiDAR: Comparing sensors and resolutions in a forest ecosystem. In preparation for submission to Forest Ecology and Management.</em>
DOI: 10.6084/m9.figshare.6955142.v1
title: Kamoske et al 2018 -- SERC Hemispherical Photographs and Associated Shapefile

description: Hemispherical photographs and locations (shapefile) associated with:<br><em></em><em><br></em><em>Kamoske A.G., Dahlin K.M., Stark S.C., and Serbin S.P. 2018. Leaf area density from airborne LiDAR: Comparing sensors and resolutions in a forest ecosystem. In preparation for submission to Forest Ecology and Management.</em>
DOI: 10.6084/m9.figshare.6955091
title: Climate and geographic distance are more influential than rivers on the beta diversity of passerines birds in Amazonia

description: The dataset has all the shapefiles and other necessary files to replicate all analyses in the manuscript Climate and geographic distance are more influential than rivers on the beta diversity of passerine birds in Amazonia (Ecographhy - doi: 10.1111/ecog.04753)
DOI: 10.6084/m9.figshare.6955070.v1
title: Discovery of novel candidate genes for coat colour in Wuzhishan pigs by integrating SNP and mRNA expression analyses

description: SNP and phenotype data of 215 Wuzhishan pigs were uploaded here. You can download the data by yourself. If you want to use our data and publish paper, please get our agreement in the first. This is my email:xuqiao987@163.com<strong>.</strong><strong> Thanks for your reading.<br></strong>
DOI: 10.6084/m9.figshare.6955070.v3
title: Discovery of novel candidate genes for coat colour in Wuzhishan pigs by integrating SNP and mRNA expression analyses

description: SNP and phenotype data of 215 Wuzhishan pigs were uploaded here. You can download the data by yourself. If you want to use our data and publish paper, please get our agreement in the first. This is my email:xuqiao987@163.com<strong>.</strong><strong> Thanks for your reading.<br></strong>
DOI: 10.6084/m9.figshare.6955091.v2
title: Climate and geographic distance are more influential than rivers on the beta diversity of passerines birds in Amazonia

description: The dataset has all the shapefiles and other necessary files to replicate all analyses in the manuscript (currently submitted for publication)
DOI: 10.6084/m9.figshare.6955091.v4
title: Climate and geographic distance are more influential than rivers on the beta diversity of passerines birds in Amazonia

description: The dataset has all the shapefiles and other necessary files to replicate all analyses in the manuscript (currently submitted for publication)
DOI: 10.6084/m9.figshare.6955070.v2
title: Discovery of novel candidate genes for coat colour in Wuzhishan pigs by integrating SNP and mRNA expression analyses

description: SNP and phenotype data of 215 Wuzhishan pigs were uploaded here. You can download the data by yourself. If you want to use our data and publish paper, please get our agreement in the first. This is my email:xuqiao987@163.com<strong>.</strong><strong> Thanks for your reading.<br></strong>
DOI: 10.6084/m9.figshare.6955091.v3
title: Climate and geographic distance are more influential than rivers on the beta diversity of passerines birds in Amazonia

description: The dataset has all the shapefiles and other necessary files to replicate all analyses in the manuscript (currently submitted for publication)
DOI: 10.6084/m9.figshare.6955052
title: Supplementary Material for: Disassembly of Subplasmalemmal Actin Filaments Induces Cytosolic Ca<sup>2+</sup> Increases in <b><i>Astropecten aranciacus</i></b> Eggs

description: <b><i>Background/Aims:</i></b> Eggs of all animal species display intense cytoplasmic Ca<sup>2+</sup> increases at fertilization. Previously, we reported that unfertilized eggs of <i>Astropecten aranciacus</i> exposed to an actin drug latrunculin A (LAT-A) exhibit similar Ca<sup>2+</sup> waves and cortical flashes after 5-10 min time lag. Here, we have explored the molecular mechanisms underlying this unique phenomenon. <b><i>Methods:</i></b> Starfish eggs were pretreated with various agents such as other actin drugs or inhibitors of phospholipase C (PLC), and the changes of the intracellular Ca<sup>2+</sup> levels were monitored by use of Calcium Green in the presence or absence of LAT-A. The concomitant changes of the actin cytoskeleton were visualized with fluorescent F-actin probes in confocal microscopy. <b><i>Results:</i></b> We have shown that the LAT-A-induced Ca<sup>2+</sup> increases are related to the disassembly of actin flaments: <i>i)</i> not only LAT-A but also other agents depolymerizing F-actin (i.e. cytochalasin B and mycalolide B) induced similar Ca<sup>2+</sup> increases, albeit with slightly lower efficiency; <i>ii)</i> drugs stabilizing F-actin (i.e. phalloidin and jasplakinolide) either blocked or significantly delayed the LAT-A-induced Ca<sup>2+</sup> increases. Further studies utilizing pharmacological inhibitors of PLC (U-73122 and neomycin), dominant negative mutant of PLC-ɣ, specific sequestration of PIP2 (RFP-PH), InsP<sub>3</sub> uncaging, and quantitation of endogenous InsP<sub>3</sub> all indicated that LAT-A induces Ca<sup>2+</sup> increases by stimulating PLC rather than sensitizing InsP<sub>3</sub> receptors. In support of the idea, it bears emphasis that LAT-A timely increased intracellular contents of InsP<sub>3</sub> with concomitant decrease of PIP2 levels in the plasma membrane. <b><i>Conclusion:</i></b> Taken together, our results suggest that suboolemmal actin filaments may serve as a scaffold for cell signaling and modulate the activity of the key enzyme involved in intracellular Ca<sup>2+</sup> signaling.
DOI: 10.15131/shef.data.6955037
title: Improved planar InAs avalanche photodiodes with reduced dark current and increased responsivity

description: Indium Arsenide (InAs) infrared photodiodes provide high quantum efficiency in the wavelength range of 1.0 to 3.0 µm. Planar diode configuration has been adopted to reduce surface leakage. In this work, new fabrication procedures for planar InAs avalanche photodiodes (APDs) are reported. Beryllium (Be) ions were implanted into InAs at a relatively low energy of 34 keV. Effects of duration of post implant annealing on the electrical characteristics of InAs APDs were investigated. It was found that a combination of post implant annealing at 500 °C for 15 minutes and a shallow surface etch produces planar APDs with good characteristics (room temperature dark current density of 0.52 A/cm<sup>2</sup> at -0.2 V and external quantum efficiency of 51% at 1520 nm at ‑0.3 V). These represent a 3 times reduction in dark current and 1.4 times increase in responsivity, compared to earlier Be‑implanted planar InAs APDs. The APDs’ avalanche gain characteristics remain similar to those from earlier reports, with a gain of 4 at a relatively low operating bias of 5 V. This suggests the potential of integrating InAs APDs with low voltage readout integrated circuits (ROIC) for development of infrared imaging arrays. The data reported in this paper is available from the ORDA digital repository (DOI: 10.15131/shef.data.6955037).