cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.963rxw
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gelsemium rankinii",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 113 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013205-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.seb2cf
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Multiclavula vernalis",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 31 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013206-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xqvcy
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stenolicmus sarmientoi",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013207-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6m4u2f
title: Occurrence Download

description: A dataset containing 2102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Elionurus muticus"
 ]
}

 The dataset includes 2102 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013208-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/q69b-er35
title: Breeder Facing AI-Tools project data sets

description: The Agriculture and Food (A&F) Research Unit is leading a Grains Research and Development Corporation (GRDC) investment funder through GRDC's Accelerating Genetic Gain Initiative, in partnership with the University of Queensland, Agrisapiens, the University of Western Australia and the Australian National University. The project will develop breeder facing AI tools to maximise use of pre-breeding outputs and improve breeding processes and will be delivered over a 3-year term (completion November 2028).  

A wealth of pre-breeding genetic resources, populations of diverse, unimproved or non-elite material that breeders tap into to improve crops, and associated data have been generated in Australia’s primary grain crops this century. The translation of these resources into value for breeding programs has not been realised to its full potential, due to a lack of accessible, validated tools and methods to support efficient introduction of pre-breeding diversity into breeding programs. In this project, a multi-disciplinary team brings together the necessary experience and capability to address this challenge. Recent advancements in artificial intelligence (AI) offer potential to better integrate diverse data sources, including genetic, phenotypic and environmental data, and equip breeders with the capability to optimise how pre-breeding diversity is leveraged in breeding programs to generate superior genotypes more efficiently. The project team will develop a data driven solution that address breeder-identified gaps in an AI supported ‘Pre-Breeding Optimisation Engine’. The project aims to benefit Australian crop breeding companies through dissemination of project outputs to the Australian grain crops industry. This will translate into growers having access to diverse wheat, canola and barley varieties with greater yield gains and resilience, supporting Australia’s capacity to remain internationally competitive in global grain markets. 

The purpose of this private DAP collection is to support data sharing among partners within the project, subject to relevant MTA and data sharing agreements. This includes genome SNP and sequence data, phenotype data, environmental and management meta-data for wheat, barley and canola.

A separate DAP repository will be made available at completion of the project to enable sharing/distribution of relevant project outputs for research or commercial use. 

Anyone interested in the project, associated data assets or outputs should contact Shannon Dillon via email, shannon.dillon@csiro.au
DOI: 10.7802/3004
title: Code/Syntax: Umzugsverhalten der Babyboomer-Kohorte
DOI: 10.15468/dl.4rpxsc
title: Occurrence Download

description: A dataset containing 3678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pityrocarpa moniliformis",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 3678 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013209-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ctz78
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Multiclavula corynoides",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 43 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013210-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18472920
title: Data from: Spatiotemporal variability from physics to plankton ecology in an upwelling bay

description: Abstract

Bays play a critical role in Eastern Boundary Upwelling Systems (EBUS) as hotspots of biological productivity and incubators for commercially important species. Within the California EBUS, Monterey Bay is a well-studied upwelling bay located downstream of the Año Nuevo upwelling center. Spatial structuring includes enhanced phytoplankton blooms in the northern and southern bay due to the influx of nutrient-rich upwelled water and locally enhanced residence time and stratification. Temporal structuring includes a clear seasonal succession in phytoplankton taxa, as first diatoms and then dinoflagellates bloom. These characteristics have been described from satellite data, fixed-point time series, and process studies. However, characterizing spatiotemporal patterns of variability within Monterey Bay, their relation to environmental forcing, and physical-biological coupling requires a long-term, multidisciplinary, spatially and vertically resolved time series. Here, we summarize monthly high-resolution autonomous underwater vehicle (AUV) transects from 2016 to 2024 that survey Monterey Bay from inner to outer shelf habitats. The AUV measures physical (temperature, salinity), chemical (oxygen, nitrate), and biological (fluorescence, bioluminescence) parameters, and provides qualitative ecological information on photosynthetic and heterotrophic plankton communities. Our results highlight the importance of upwelling in shaping the Monterey Bay ecosystem. Dominant variability for most parameters is found to be strongly seasonal and coherent across the bay, and to be correlated with upwelling and each other for physics, chemistry, and part of the plankton community (i.e. diatoms). Dinoflagellates and zooplankton display contrasting dynamics apparently unrelated to upwelling, likely associated with stratification (dinoflagellates) and the end of blooms (zooplankton).

Dataset description

This dataset includes 2 files:



gridded AUV surveys, collected approximately monthly in a diamond pattern in Monterey Bay from 2016 to 2024, saved as a NetCDF file. Metadata is given in the NetCDF file. 

the corresponding gulper data used to evaluate plankton proxies, saved as a csv file where columns G-L are the 18S eDNA read counts summed by broad taxonomic groups, columns M-N are matching variables measured by autonomous sensors onboard the vehicle, and columns O-R are matching proxies computed from full-resolution bioluminescence and/or fluorescence data.


Details regarding data sources and calculations can be found in Messié et al. (2026).
description: This work was primarily funded by the David and Lucile Packard Foundation.
DOI: 10.5281/zenodo.18472919
title: Data from: Spatiotemporal variability from physics to plankton ecology in an upwelling bay

description: Abstract

Bays play a critical role in Eastern Boundary Upwelling Systems (EBUS) as hotspots of biological productivity and incubators for commercially important species. Within the California EBUS, Monterey Bay is a well-studied upwelling bay located downstream of the Año Nuevo upwelling center. Spatial structuring includes enhanced phytoplankton blooms in the northern and southern bay due to the influx of nutrient-rich upwelled water and locally enhanced residence time and stratification. Temporal structuring includes a clear seasonal succession in phytoplankton taxa, as first diatoms and then dinoflagellates bloom. These characteristics have been described from satellite data, fixed-point time series, and process studies. However, characterizing spatiotemporal patterns of variability within Monterey Bay, their relation to environmental forcing, and physical-biological coupling requires a long-term, multidisciplinary, spatially and vertically resolved time series. Here, we summarize monthly high-resolution autonomous underwater vehicle (AUV) transects from 2016 to 2024 that survey Monterey Bay from inner to outer shelf habitats. The AUV measures physical (temperature, salinity), chemical (oxygen, nitrate), and biological (fluorescence, bioluminescence) parameters, and provides qualitative ecological information on photosynthetic and heterotrophic plankton communities. Our results highlight the importance of upwelling in shaping the Monterey Bay ecosystem. Dominant variability for most parameters is found to be strongly seasonal and coherent across the bay, and to be correlated with upwelling and each other for physics, chemistry, and part of the plankton community (i.e. diatoms). Dinoflagellates and zooplankton display contrasting dynamics apparently unrelated to upwelling, likely associated with stratification (dinoflagellates) and the end of blooms (zooplankton).

Dataset description

This dataset includes 2 files:



gridded AUV surveys, collected approximately monthly in a diamond pattern in Monterey Bay from 2016 to 2024, saved as a NetCDF file. Metadata is given in the NetCDF file. 

the corresponding gulper data used to evaluate plankton proxies, saved as a csv file where columns G-L are the 18S eDNA read counts summed by broad taxonomic groups, columns M-N are matching variables measured by autonomous sensors onboard the vehicle, and columns O-R are matching proxies computed from full-resolution bioluminescence and/or fluorescence data.


Details regarding data sources and calculations can be found in Messié et al. (2026).
description: This work was primarily funded by the David and Lucile Packard Foundation.
DOI: 10.15468/dl.nc4vat
title: Occurrence Download

description: A dataset containing 880 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.26094 41.29627,-82.04641 41.29627,-82.04641 48.21103,-90.26094 48.21103,-90.26094 41.29627))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eptesicus fuscus fuscus"
 ]
}

 The dataset includes 880 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013212-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33jmh5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gelsemium sempervirens",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013211-260208012135463/datasets/export for details.
DOI: 10.15468/dl.zrp4d9
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichomycterus bomboizanus",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013213-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j768g3
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Elionurus royleanus"
 ]
}

 The dataset includes 37 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013214-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ezz5s9
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Multiclavula mucida",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 239 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013215-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sg7egw
title: Occurrence Download

description: A dataset containing 1425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pterogyne nitens",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 1425 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013216-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uekxz2
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pteleocarpa lamponga",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 56 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013218-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ma9z3q
title: Occurrence Download

description: A dataset containing 12154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Orcinus orca",
 "Year 1900-2026"
 ]
}

 The dataset includes 12154 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013217-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jpuym
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichomycterus chaberti",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013219-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48580/d3m7f.v88
title: FAMILY DOLICHOPODIDAE
DOI: 10.15468/dl.ptynad
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cresporhaphis macrospora",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013220-260208012135463/datasets/export for details.
DOI: 10.15468/dl.ctduuy
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cattleya tigrina",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 57 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013221-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnpb3w
title: Occurrence Download

description: A dataset containing 593 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Elionurus tripsacoides"
 ]
}

 The dataset includes 593 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013222-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rr3cst
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichomycterus dispar",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 13 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013224-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhtdhd
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cattleya walkeriana",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 61 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013226-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fg7dm
title: Occurrence Download

description: A dataset containing 623 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canscora diffusa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 623 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013223-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skmzsg
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bothrops monsignifer"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013227-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxgr2s
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thelocarpon epibolum",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 56 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013225-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18617365
title: AlphaFold 3-predicted structures of Ni-CODH/ECH and Mo-CODH from Parageobacillus sp. G301

description: This record contains AlphaFold 3-predicted structural models of nickel-containing carbon monoxide dehydrogenase/energy-converting hydrogenase (Ni-CODH/ECH; CooSF/HyfBCEFDGHI), molybdenum-containing CODH (Mo-CODH; CoxMSL), Mo-CODH-CoxG (including the accessory protein CoxG for electron transfer) from Parageobacillus sp. G301. These models represent computational predictions and do not correspond to experimentally determined structures. They are provided to support the structural analyses presented in the associated manuscript (Katayama et al., 2025, bioRxiv).
DOI: 10.5281/zenodo.18617366
title: AlphaFold 3-predicted structures of Ni-CODH/ECH and Mo-CODH from Parageobacillus sp. G301

description: This record contains AlphaFold 3-predicted structural models of nickel-containing carbon monoxide dehydrogenase/energy-converting hydrogenase (Ni-CODH/ECH; CooSF/HyfBCEFDGHI), molybdenum-containing CODH (Mo-CODH; CoxMSL), Mo-CODH-CoxG (including the accessory protein CoxG for electron transfer) from Parageobacillus sp. G301. These models represent computational predictions and do not correspond to experimentally determined structures. They are provided to support the structural analyses presented in the associated manuscript (Katayama et al., 2025, bioRxiv).