cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/r4q3d2
title: A crowdsourcing approach to collecting photo-based insect and plant observation records

description: Background: 
Scientific field observation by members of the public is known as citizen science and has become popular all across the world. Citizen science is advantageous for collecting large amounts of scientific data and can be seen as a crowdsourcing approach to data collection. Information and communications technology is enhancing the availability of citizen science. Mobile devices, such as mobile phones, that have a digital camera with a global positioning system (GPS) are necessities of contemporary life and can be utilized as powerful observation tools in citizen science.

New information: 
We developed a web-based system as a data collection tool for citizen science. Participants submit an e-mail with a photo taken by their mobile phones. The photos contain location information, which can be easily and automatically embedded if the mobile phone is equipped with GPS. We collaborated with regional event managers, such as museum curators, and held citizen science events in each region and for various target taxonomic groups. All photos were stored in our data server, and the organisms were taxonomically identified by citizen scientists, regional managers, and us. In total, 154 species and 843 data records were collected in this project conducted from 2011 to 2016.
DOI: 10.34808/p7nh-6w55
title: Impact of MET2 gene deletion on the growth ability of C. albicans SC5314 cells

description: The datasets present results on the impact of MET2 gene deletion, which encodes homoserine acetyltransferase, on the growth ability of C. albicans SC5314 cells in YNB medium supplemented with L-Met, L-Cys, or L-Ser at different concentrations.
Overnight cultures of C. albicans were washed twice with sterile phosphate-buffered saline (PBS). The cell suspensions were diluted to 2 × 10⁵ cells mL⁻¹ in YNB medium without amino acids and with ammonium sulfate. Aliquots of 100 µL were used to inoculate microtiter plate wells containing 100 µL of YNB medium (without amino acids, with ammonium sulfate) supplemented with L-Met, L-Cys, or L-Ser at varying concentrations. The microplates were incubated at 30 °C for 24 h, and cell density was measured spectrophotometrically (λ = 600 nm) using a TECAN Spark 10M microplate reader.
Medium composition:YNB medium without amino acids, with ammonium sulfate, 2% (w/v) glucose.
The studies were financially supported from the project OPUS 20 financed by the National Science Centre (No. UMO-2020/39/B/NZ7/01519).
DOI: 10.5281/zenodo.17475868
title: Kondo cloud conductance in cavity-coupled quantum dots with asymmetric barriers

description: These are the dataset of "Kondo cloud conductance in cavity-coupled quantum dots with asymmetric barriers" by Fossion et al. Please refer to "Plot_.ipynb" to reproduce the figures.
DOI: 10.5281/zenodo.17475869
title: Kondo cloud conductance in cavity-coupled quantum dots with asymmetric barriers

description: These are the dataset of "Kondo cloud conductance in cavity-coupled quantum dots with asymmetric barriers" by Fossion et al. Please refer to "Plot_.ipynb" to reproduce the figures.
DOI: 10.5281/zenodo.17475633
title: Datasets and models for Metagenomics-AI

description: Datasets and models for Metagenome-AI framework and related manuscript

4 datasets in total: Global AMP prediction, Gram positive, Gram negative bacteria and toxicity.

3 Base models: ESM2-3B, ESM3 and ProteinTrans.

Proteins collected from extreme environments are given in 11379_corepeptides_scored_cAMP20250915-forRevision.tsv
DOI: 10.15468/zr2wfx
title: CardObs : Observations naturalistes issues de l'outil CardObs-Zicrona : données des rencontres nationales

description: Données d'insectes hémiptères produites dans le cadre de l'organisation des rencontres nationales de Zicrona, association française des hétéroptéristes
DOI: 10.5281/zenodo.15392443
title: Non-destructive Estimation of Concrete Compressive Strength: Databases

description: Repository Description

This repository presents an extensive collection of published studies correlating non-destructive test (NDT) results with concrete compressive strength. The included NDT methods are:



Ultrasonic Pulse Velocity (UPV)

Rebound Hammer (RH)

SonReb (combined UPV and RH)


The dataset comprises 16,531 test results from 115 published studies, distributed as follows:



UPV: 6,103 tests from 90 studies

RH: 10,428 tests from 87 studies

SonReb: 3,299 tests from 53 studies


In each database, the final response variable is the concrete compressive strength, normalized to a 150×300 mm reference cylinder.

Database Structure

Each database contains approximately equal proportions of numerical and categorical variables:



UPV: 20 input variables

RH: 18 input variables

SonReb: 25 input variables


These variables cover material age, location, composition, NDT parameters, and testing procedures. Of the total dataset, 1,328 UPV tests, 3,042 RH tests, and 544 SonReb tests were conducted on in-situ structures, while the remainder were performed on laboratory-cast specimens. The datasets span material ages from the 1930s to freshly cast specimens, excluding tests on concrete less than one day old. Numerical data from visualized results in publications were extracted using an open-source computer vision-assisted software for high precision.

Project and Documentation

These databases were compiled as part of the EU-funded ReCreate project. The ReCreate project researches the process of reusing precast concrete elements through four real-life deconstruction and reuse pilots in Europe. The project aims to assess and improve the technical feasibility of a circular life cycle for structural precast elements across the entire value chain from disassembly, quality control, design for reuse and reconstruction.

The derivation and application of these datasets in an empirical and machine learning modelling framework is described in detail in the open-access journal article written by the authors at: https://doi.org/10.1016/j.ndteint.2025.103549

For detailed descriptions of nomenclature, abbreviations, and assumptions, refer to the Database Guide PDF included in this repository.
DOI: 10.5281/zenodo.14921018
title: Non-destructive Estimation of Concrete Compressive Strength: Databases

description: Repository Description

This repository presents an extensive collection of published studies correlating non-destructive test (NDT) results with concrete compressive strength. The included NDT methods are:



Ultrasonic Pulse Velocity (UPV)

Rebound Hammer (RH)

SonReb (combined UPV and RH)


The dataset comprises 16,531 test results from 115 published studies, distributed as follows:



UPV: 6,103 tests from 90 studies

RH: 10,428 tests from 87 studies

SonReb: 3,299 tests from 53 studies


In each database, the final response variable is the concrete compressive strength, normalized to a 150×300 mm reference cylinder.

Database Structure

Each database contains approximately equal proportions of numerical and categorical variables:



UPV: 20 input variables

RH: 18 input variables

SonReb: 25 input variables


These variables cover material age, location, composition, NDT parameters, and testing procedures. Of the total dataset, 1,328 UPV tests, 3,042 RH tests, and 544 SonReb tests were conducted on in-situ structures, while the remainder were performed on laboratory-cast specimens. The datasets span material ages from the 1930s to freshly cast specimens, excluding tests on concrete less than one day old. Numerical data from visualized results in publications were extracted using an open-source computer vision-assisted software for high precision.

Project and Documentation

These databases were compiled as part of the EU-funded ReCreate project. The ReCreate project researches the process of reusing precast concrete elements through four real-life deconstruction and reuse pilots in Europe. The project aims to assess and improve the technical feasibility of a circular life cycle for structural precast elements across the entire value chain from disassembly, quality control, design for reuse and reconstruction.

The derivation and application of these datasets in an empirical and machine learning modelling framework is described in detail in the open-access journal article written by the authors at: https://doi.org/10.1016/j.ndteint.2025.103549

For detailed descriptions of nomenclature, abbreviations, and assumptions, refer to the Database Guide PDF included in this repository.
DOI: 10.15468/dl.wafwnw
title: Occurrence Download

description: A dataset listing the 1377 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.6967 -41.29637,-70.94815 -41.29637,-70.94815 -40.96432,-71.6967 -40.96432,-71.6967 -41.29637))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 1377 records were derived from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006569-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/hnheni
title: My naturesounds - nature observations with sound recordings

description: Sound-based taxon occurrences which have been provided by citizen scientists through PlutoF workbench and connected mobile application "Minu loodusheli" (My naturesound). Every occurrence can be validated via accompanying sound recording.

Mostly opportunistic observations by citizen scientists using mobile application for annotating coordinates and time of observation and adding sound recording to the observation.

All observations are provided with sound recording which is used to identify the species.


Observation is recorded with mobile app "Minu loodusheli" (My naturesound), observation record with sound files is transferred to PlutoF cloud database. Observation is moderated within PlutoF system by appointed persons
DOI: 10.15468/dl.7xztfz
title: Occurrence Download

description: A dataset containing 1016 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Carnivora (Mammalia) Collection from the Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Portugal"
 ]
}

 The dataset includes 1016 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006579-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/h3gzct
title: Données de la quête INPN Espèces : À la recherche du Muguet !

description: Le Muguet (<i>Convallaria majalis</i> L. ; famille des Convallariacées ; ou Asparagacées en classification APG) est une espèce de sous-bois frais et humide, assez commune dans presque toutes les régions de France. Chaque pied est composé de quasiment toujours deux feuilles émergeant du sol à partir d’un rhizome souterrain, avec une hampe florale présentant une dizaine de fleurs en cloche d’un blanc pur à l’odeur caractéristique. Puis, viennent les fruits : de petites baies sphériques vertes qui deviennent rouges à maturité. Attention, car toute la plante est toxique !



Il n’existe aucun risque de confusion entre le Muguet et une autre espèce.



Rappel : l’application INPN Espèces n’accepte que les observations d’individus sauvages. Il est inutile de nous envoyer une photo de Muguet planté dans un jardin. Toute observation qui nous paraîtra être celle d’un spécimen cultivé ne sera pas prise en compte.
DOI: 10.15468/dl.r9t5sr
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Czechia",
 "OccurrenceStatus is Present",
 "TaxonKey is Psilocybe serbica"
 ]
}

 The dataset includes 78 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006580-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3fc39
title: Occurrence Download

description: A dataset containing 9861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Living Specimen, Occurrence evidence)",
 "Continent is Europe",
 "Country is one of (Spain, United Kingdom of Great Britain and Northern Ireland, France, Netherlands, Ireland, Belgium, Portugal, Isle of Man, Norway, Guernsey)",
 "Geometry POLYGON((-29.94274 36.25960,25.22415 36.25960,25.22415 62.40687,-29.94274 62.40687,-29.94274 36.25960))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Himanthalia elongata"
 ]
}

 The dataset includes 9861 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006578-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28554459
title: Short- and long-term sex-dependent effects of a nutritional supplement after hatching on growth, metabolism and gut microbiota in broiler chickens

description: 1. In chicken production, a delay occurs between hatching and placement in the rearing building. This work analysed the effects of this experience on growth, metabolism, and caecal microbiota and tested whether a nutritional supplement (SUP) could mitigate these effects. 2. Chicks were placed directly in a rearing room (Control: C) or were exposed to a 24 h period without feed and water before being placed (Delayed: D). During the 24 h period, half of each group was provided with a SUP. 3. The D effect reduced body weight until d 27 in females (<i>p</i> = 0.017) and d 34 in males (<i>p</i> = 0.015). On d 1, the D group had reduced plasma triglycerides (TG) and increased uric acid (UA), total antioxidant status (TAS) and liver thiobarbituric acid reactive species in both sexes (<i>p</i> &lt; 0.050). On d 34, the D group had increased UA and TAS only in females. It increased the α-diversity of microbiota in males (d 12 <i>p</i> = 0.036; d 34 <i>p</i> = 0.038) and the α-diversity in females on d 34 (<i>p</i> = 0.008). Changes in microbiota composition in both males and females were observed until d 34 at the genus level. 4. On d 1, the SUP increased glucose concentration in D and C group males (<i>p</i> = 0.001) and females (<i>p</i> = 0.002). The decrease in TG and increase in UA concentrations and TAS in chicks from the D group were mitigated by the SUP in females. On d 34, SUP reduced the haptoglobin-like activity in D and C group males (<i>p</i> = 0.041) and increased the TG concentration in C group males (<i>p</i> = 0.016). The SUP had little effect on the caecal microbiota. 5. Delayed placement induced long-lasting effects on growth, metabolism, and caecal microbiota composition. The effects of a nutritional supplement were variable and sex-dependent.
DOI: 10.6084/m9.figshare.28554459.v1
title: Short- and long-term sex-dependent effects of a nutritional supplement after hatching on growth, metabolism and gut microbiota in broiler chickens

description: 1. In chicken production, a delay occurs between hatching and placement in the rearing building. This work analysed the effects of this experience on growth, metabolism, and caecal microbiota and tested whether a nutritional supplement (SUP) could mitigate these effects. 2. Chicks were placed directly in a rearing room (Control: C) or were exposed to a 24 h period without feed and water before being placed (Delayed: D). During the 24 h period, half of each group was provided with a SUP. 3. The D effect reduced body weight until d 27 in females (<i>p</i> = 0.017) and d 34 in males (<i>p</i> = 0.015). On d 1, the D group had reduced plasma triglycerides (TG) and increased uric acid (UA), total antioxidant status (TAS) and liver thiobarbituric acid reactive species in both sexes (<i>p</i> &lt; 0.050). On d 34, the D group had increased UA and TAS only in females. It increased the α-diversity of microbiota in males (d 12 <i>p</i> = 0.036; d 34 <i>p</i> = 0.038) and the α-diversity in females on d 34 (<i>p</i> = 0.008). Changes in microbiota composition in both males and females were observed until d 34 at the genus level. 4. On d 1, the SUP increased glucose concentration in D and C group males (<i>p</i> = 0.001) and females (<i>p</i> = 0.002). The decrease in TG and increase in UA concentrations and TAS in chicks from the D group were mitigated by the SUP in females. On d 34, SUP reduced the haptoglobin-like activity in D and C group males (<i>p</i> = 0.041) and increased the TG concentration in C group males (<i>p</i> = 0.016). The SUP had little effect on the caecal microbiota. 5. Delayed placement induced long-lasting effects on growth, metabolism, and caecal microbiota composition. The effects of a nutritional supplement were variable and sex-dependent.
DOI: 10.15468/dl.qjqx4p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chalicodoma benoisti",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006581-251025141854904/datasets/export for details.
DOI: 10.15468/dl.ps27fa
title: Occurrence Download

description: A dataset containing 3335121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "HasCoordinate is true",
 "Year is greater than or equal to 1950",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((90 24, 123 24, 123 36, 90 36, 90 24))"
 ]
}

 The dataset includes 3335121 records from 195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006556-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30479876
title: Honey bee gut bacterial communities’ characterisation across different ecosystem qualities in the department of Boyacá, Colombia

description: Honey bees (<i>Apis mellifera</i>) are essential pollinators that play a crucial role in ecosystem functioning. Recent studies have examined their gut microbiota to better understand ecological interactions and the impacts of anthropogenic disturbances. However, few have explored how ecosystem quality, shaped by the availability of natural resources and influenced by both anthropogenic disturbance and climatic seasonality, affects honey bees, especially in Colombia, where beekeeping is mainly artisanal. In this study, we describe the gut bacterial communities of 80 honey bee workers collected from local apiaries across three municipalities in the Boyacá department, Colombia, using amplicon-based 16S-rRNA sequencing. We conducted a cross-sectional comparison of three apiaries with varying environmental qualities and a longitudinal study of a hive relocated from a disturbed area to a more natural environment. Our analyses indicate that ecosystem quality, as mediated by human disturbance and seasonal environmental variation, can influence the relative abundances and diversity metrics of bacterial communities in environments where apiaries are located. Furthermore, favourable environmental conditions within the ecosystem promote the relative abundance of beneficial bacteria such as <i>Bombilactobacillus</i> spp., <i>Lactobacillus</i> spp., and <i>Bifidobacterium asteroides</i>, which play key roles in nectar and pollen metabolism and regulate pathogen activity. In contrast, disturbed ecosystems reduce the abundance of beneficial bacteria and increase opportunistic bacteria, potentially compromising physiological processes essential to bee health. This study provides the first insights into the impact of ecosystem quality on honey bee gut microbiota in the country, highlighting the importance of maintaining healthy ecosystems to support these pollinators.
DOI: 10.6084/m9.figshare.30479876.v1
title: Honey bee gut bacterial communities’ characterisation across different ecosystem qualities in the department of Boyacá, Colombia

description: Honey bees (<i>Apis mellifera</i>) are essential pollinators that play a crucial role in ecosystem functioning. Recent studies have examined their gut microbiota to better understand ecological interactions and the impacts of anthropogenic disturbances. However, few have explored how ecosystem quality, shaped by the availability of natural resources and influenced by both anthropogenic disturbance and climatic seasonality, affects honey bees, especially in Colombia, where beekeeping is mainly artisanal. In this study, we describe the gut bacterial communities of 80 honey bee workers collected from local apiaries across three municipalities in the Boyacá department, Colombia, using amplicon-based 16S-rRNA sequencing. We conducted a cross-sectional comparison of three apiaries with varying environmental qualities and a longitudinal study of a hive relocated from a disturbed area to a more natural environment. Our analyses indicate that ecosystem quality, as mediated by human disturbance and seasonal environmental variation, can influence the relative abundances and diversity metrics of bacterial communities in environments where apiaries are located. Furthermore, favourable environmental conditions within the ecosystem promote the relative abundance of beneficial bacteria such as <i>Bombilactobacillus</i> spp., <i>Lactobacillus</i> spp., and <i>Bifidobacterium asteroides</i>, which play key roles in nectar and pollen metabolism and regulate pathogen activity. In contrast, disturbed ecosystems reduce the abundance of beneficial bacteria and increase opportunistic bacteria, potentially compromising physiological processes essential to bee health. This study provides the first insights into the impact of ecosystem quality on honey bee gut microbiota in the country, highlighting the importance of maintaining healthy ecosystems to support these pollinators.
DOI: 10.5281/zenodo.17475838
title: Flexible time aggregation for flow-based market coupling
DOI: 10.5281/zenodo.17475839
title: Flexible time aggregation for flow-based market coupling
DOI: 10.15468/dl.3jptve
title: Occurrence Download

description: A dataset listing the 1747 species recorded in GBIF matching the query:
{
 "and" : [
 "Elevation 0.0-307.0m",
 "Geometry POLYGON((-75.5952 10.47578,-75.60428 10.25556,-75.58915 10.07093,-75.41368 9.9458,-75.15048 10.01731,-74.95383 10.15135,-74.83282 10.20793,-74.854 10.4371,-74.95686 10.55907,-75.093 10.66017,-75.14745 10.53527,-75.21099 10.4133,-75.29267 10.27938,-75.41973 10.30021,-75.48024 10.45496,-75.48327 10.5204,-75.5952 10.47578))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 1747 records were derived from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006574-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.