cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6209963.v2
title: FINAL.xls

description: this is an excel sheet containing pre and post treatment data of hypothyroid male patients. It consists of semen analysis parameters hormone parameters like FSH LH TESTO INSL3 AND INHB before treatment and after treatment.<br>It also has questionnaire scores namely ADAM questionnaire and ASEX questionnaire scores that has been answered before and after treatment of hypothyroidism<br>Other data have not been used in the study but are available to be used later if needed
DOI: 10.6084/m9.figshare.6209963.v1
title: FINAL.xls

description: this is an excel sheet containing pre and post treatment data of hypothyroid male patients. It consists of semen analysis parameters hormone parameters like FSH LH TESTO INSL3 AND INHB before treatment and after treatment.<br>It also has questionnaire scores namely ADAM questionnaire and ASEX questionnaire scores that has been answered before and after treatment of hypothyroidism<br>Other data have not been used in the study but are available to be used later if needed
DOI: 10.6084/m9.figshare.6209423
title: A Custom-made Visual Feedback Device

description: Custom-made Visual Feedback Device on Balance and Functional Lower-Extremity Strength
DOI: 10.6084/m9.figshare.6209423.v1
title: A Custom-made Visual Feedback Device

description: Custom-made Visual Feedback Device on Balance and Functional Lower-Extremity Strength
DOI: 10.6084/m9.figshare.6209201
title: Dataset for: Urate transport function of rat sodium-dependent nucleobase transporter 1

description: Sodium-dependent nucleobase transporter 1 (SNBT1) is a nucleobase-specific transporter identified in our recent study. In an attempt to search for its potential substrates other than nucleobases in the present study, we could successfully find urate, a metabolic derivative of purine nucleobases, as a novel substrate, as indicated by its specific Na<sup>+</sup>-dependent and saturable transport, with a Michaelis constant of 433 μM, by rat SNBT1 (rSNBT1) stably expressed in Madin-Darby canine kidney II cells. However, urate uptake was observed only barely in the everted tissue sacs of the rat small intestine, in which rSNBT1 operates for nucleobase uptake. These findings suggested that urate undergoes a futile cycle, in which urate transported into epithelial cells is immediately effluxed back by urate efflux transporters, in the small intestine. In subsequent attempts to examine that possibility, such a futile urate cycle was demonstrated in the human embryonic kidney 293 cell line as a model cell system, where urate uptake induced by transiently introduced rSNBT1 was extensively reduced by the co-introduction of rat breast cancer resistance protein (rBCRP), a urate efflux transporter present in the small intestine. However, urate uptake was not raised in the presence of Ko143, a BCRP inhibitor, in the everted intestinal tissue sacs, suggesting that some other transporter might also be involved in urate efflux. The newly found urate transport function of SNBT1, together with the suggested futile urate cycle in the small intestine, should be of interest for its evolutional and biological implications, although SNBT1 is genetically deficient in humans.
DOI: 10.6084/m9.figshare.6209201.v1
title: Dataset for: Urate transport function of rat sodium-dependent nucleobase transporter 1

description: Sodium-dependent nucleobase transporter 1 (SNBT1) is a nucleobase-specific transporter identified in our recent study. In an attempt to search for its potential substrates other than nucleobases in the present study, we could successfully find urate, a metabolic derivative of purine nucleobases, as a novel substrate, as indicated by its specific Na<sup>+</sup>-dependent and saturable transport, with a Michaelis constant of 433 μM, by rat SNBT1 (rSNBT1) stably expressed in Madin-Darby canine kidney II cells. However, urate uptake was observed only barely in the everted tissue sacs of the rat small intestine, in which rSNBT1 operates for nucleobase uptake. These findings suggested that urate undergoes a futile cycle, in which urate transported into epithelial cells is immediately effluxed back by urate efflux transporters, in the small intestine. In subsequent attempts to examine that possibility, such a futile urate cycle was demonstrated in the human embryonic kidney 293 cell line as a model cell system, where urate uptake induced by transiently introduced rSNBT1 was extensively reduced by the co-introduction of rat breast cancer resistance protein (rBCRP), a urate efflux transporter present in the small intestine. However, urate uptake was not raised in the presence of Ko143, a BCRP inhibitor, in the everted intestinal tissue sacs, suggesting that some other transporter might also be involved in urate efflux. The newly found urate transport function of SNBT1, together with the suggested futile urate cycle in the small intestine, should be of interest for its evolutional and biological implications, although SNBT1 is genetically deficient in humans.
DOI: 10.6084/m9.figshare.6208922
title: Additional file 5: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

description: Table S4. Outputs of ancestral state reconstructions using maximum likelihood for each character and for all nodes. (XLSX 126Â kb)
DOI: 10.6084/m9.figshare.6208922.v1
title: Additional file 5: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

description: Table S4. Outputs of ancestral state reconstructions using maximum likelihood for each character and for all nodes. (XLSX 126Â kb)
DOI: 10.6084/m9.figshare.6208910
title: Additional file 4: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

description: Table S3. Character state assignments for each genus or subgenus species-group from characters listed in Table 2. Numbers in parentheses correspond character designations from Cairns & Bayer [2]. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6208910.v1
title: Additional file 4: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

description: Table S3. Character state assignments for each genus or subgenus species-group from characters listed in Table 2. Numbers in parentheses correspond character designations from Cairns & Bayer [2]. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6208907
title: MOESM6 of An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer

description: Additional file 6: Table S1. Correlation between the expression of validated miRNA-mRNA target gene pairs in TCGA-PRAD. For each gene target the role in PrCa, reference indicated as PMID, correlation r and p value are shown. No qualifier- miR-130b directed targets with strong experimental evidence assigned by TarBase. a- miR-301b direct targets with strong experimental evidence assigned by TarBase. †-Direct Targets with experimental validation in PrCa which are not identified by TarBase. *-Direct Targets predicted in PrCa which are not identified by TarBase.
DOI: 10.6084/m9.figshare.6208907.v1
title: MOESM6 of An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer

description: Additional file 6: Table S1. Correlation between the expression of validated miRNA-mRNA target gene pairs in TCGA-PRAD. For each gene target the role in PrCa, reference indicated as PMID, correlation r and p value are shown. No qualifier- miR-130b directed targets with strong experimental evidence assigned by TarBase. a- miR-301b direct targets with strong experimental evidence assigned by TarBase. †-Direct Targets with experimental validation in PrCa which are not identified by TarBase. *-Direct Targets predicted in PrCa which are not identified by TarBase.
DOI: 10.6084/m9.figshare.6208898
title: Additional file 3: of FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer–promoter map

description: Tables S5–S6 GRO-seq and ChIA-PET samples. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.6208898.v1
title: Additional file 3: of FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer–promoter map

description: Tables S5–S6 GRO-seq and ChIA-PET samples. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.6208895
title: Additional file 3: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

description: Table S2. Data block assignments and Partition Finder results. Partition schemes and molecular models of evolution chosen by either AIC (Akaike Information Criterion) or BIC (Bayesian Information Criterion). (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.6208895.v1
title: Additional file 3: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

description: Table S2. Data block assignments and Partition Finder results. Partition schemes and molecular models of evolution chosen by either AIC (Akaike Information Criterion) or BIC (Bayesian Information Criterion). (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.6208880
title: Additional file 2: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

description: Nexus alignments using partitions and models chosen by either BIC or AIC by the program Partition Finder. (XLSX 106Â kb)
DOI: 10.6084/m9.figshare.6208880.v1
title: Additional file 2: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

description: Nexus alignments using partitions and models chosen by either BIC or AIC by the program Partition Finder. (XLSX 106Â kb)
DOI: 10.6084/m9.figshare.6208865
title: Additional file 2: of FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancerâ promoter map

description: Table S4 GO enrichment analyses. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.6208865.v1
title: Additional file 2: of FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancerâ promoter map

description: Table S4 GO enrichment analyses. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.6208859
title: Additional file 1: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

description: Table S1A and S1B. Specimens sequenced with taxon name, sample ID, collection location, collection station, year collected, preservation type, type specimen information, and Genbank Accession numbers. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.6208859.v1
title: Additional file 1: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

description: Table S1A and S1B. Specimens sequenced with taxon name, sample ID, collection location, collection station, year collected, preservation type, type specimen information, and Genbank Accession numbers. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.6208847
title: Additional file 7: of A genome-wide assessment of conserved SNP alleles reveals a panel of regulatory SNPs relevant to the peripheral nerve

description: List of the 224 SOX10 consensus sites harboring SNPs. Columns 1 through 3 are BED file formatted hg18 coordinates of the conserved, non-coding SOX10 consensus sites. Columns 4 through 6 are BED file formatted hg18 coordinates of the SNPs residing within the identified regions. The final column is the rs ID number for each SNP. (TXT 14 kb)
DOI: 10.6084/m9.figshare.6208847.v1
title: Additional file 7: of A genome-wide assessment of conserved SNP alleles reveals a panel of regulatory SNPs relevant to the peripheral nerve

description: List of the 224 SOX10 consensus sites harboring SNPs. Columns 1 through 3 are BED file formatted hg18 coordinates of the conserved, non-coding SOX10 consensus sites. Columns 4 through 6 are BED file formatted hg18 coordinates of the SNPs residing within the identified regions. The final column is the rs ID number for each SNP. (TXT 14 kb)
DOI: 10.6084/m9.figshare.6208775
title: Additional file 3: of A genome-wide assessment of conserved SNP alleles reveals a panel of regulatory SNPs relevant to the peripheral nerve

description: List of the pilot set of regions and SNPs from chromosome 21, 22, and X. Columns 1 through 3 are BED file formatted hg18 coordinates of the conserved, non-coding regions. Columns 4 through 6 are BED file formatted hg18 coordinates of the SNPs residing within the identified regions. The final column is the rs ID number for each SNP. (TXT 9 kb)
DOI: 10.6084/m9.figshare.6208775.v1
title: Additional file 3: of A genome-wide assessment of conserved SNP alleles reveals a panel of regulatory SNPs relevant to the peripheral nerve

description: List of the pilot set of regions and SNPs from chromosome 21, 22, and X. Columns 1 through 3 are BED file formatted hg18 coordinates of the conserved, non-coding regions. Columns 4 through 6 are BED file formatted hg18 coordinates of the SNPs residing within the identified regions. The final column is the rs ID number for each SNP. (TXT 9 kb)
DOI: 10.6084/m9.figshare.6208772
title: MOESM1 of Mice lacking galectin-3 (Lgals3) function have decreased home cage movement

description: Additional file 1: Table 1. Lgals3−/− and WT behavioral metrics. Column 1 lists the abbreviation for each behavior, Column 2 lists the overall behavioral assay class, Column 3 provides a brief description of the behavior, Column 4 is an index. Columns 5 and Column 6 list mean values for each behavior, control and Lgals3−/− respectively. Columns 7–25 list results for each test by individual mouse. Control mice are listed in columns 7–16; Lgals3−/− mice are listed in columns 17–25. Columns 26, 28, and 30 provide unadjusted p values calculated by Mann–Whitney, Student’s t test, and fold change (B) methods. Columns 27 and 29 provide p values adjusted by false discovery rate (FDR) for Mann–Whitney (column 27) and Student’s t test (column 29). Column 31 lists the behavioral fold change. Labeled spreadsheet tabs correspond to 2–3 months old and 6–7 month old cohorts, respectively.
DOI: 10.6084/m9.figshare.6208772.v1
title: MOESM1 of Mice lacking galectin-3 (Lgals3) function have decreased home cage movement

description: Additional file 1: Table 1. Lgals3−/− and WT behavioral metrics. Column 1 lists the abbreviation for each behavior, Column 2 lists the overall behavioral assay class, Column 3 provides a brief description of the behavior, Column 4 is an index. Columns 5 and Column 6 list mean values for each behavior, control and Lgals3−/− respectively. Columns 7–25 list results for each test by individual mouse. Control mice are listed in columns 7–16; Lgals3−/− mice are listed in columns 17–25. Columns 26, 28, and 30 provide unadjusted p values calculated by Mann–Whitney, Student’s t test, and fold change (B) methods. Columns 27 and 29 provide p values adjusted by false discovery rate (FDR) for Mann–Whitney (column 27) and Student’s t test (column 29). Column 31 lists the behavioral fold change. Labeled spreadsheet tabs correspond to 2–3 months old and 6–7 month old cohorts, respectively.
DOI: 10.6084/m9.figshare.6208763
title: Additional file 2: of A genome-wide assessment of conserved SNP alleles reveals a panel of regulatory SNPs relevant to the peripheral nerve

description: List of the 6197 SNPs residing within 6164 conserved, non-coding sequences. Columns 1 through 3 are BED file formatted hg18 coordinates of the conserved, non-coding regions. Columns 4 through 6 are BED file formatted hg18 coordinates of the SNPs residing within the identified regions. The final column is the rs ID number for each SNP. (TXT 352 kb)
DOI: 10.6084/m9.figshare.6208763.v1
title: Additional file 2: of A genome-wide assessment of conserved SNP alleles reveals a panel of regulatory SNPs relevant to the peripheral nerve

description: List of the 6197 SNPs residing within 6164 conserved, non-coding sequences. Columns 1 through 3 are BED file formatted hg18 coordinates of the conserved, non-coding regions. Columns 4 through 6 are BED file formatted hg18 coordinates of the SNPs residing within the identified regions. The final column is the rs ID number for each SNP. (TXT 352 kb)
DOI: 10.6084/m9.figshare.6208754
title: Additional file 7: of Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

description: Table S6. Species intensity and prevalence modelling output. Model estimates of the regression of horse age, premise, strongyle species, horse sex and interaction between horse sex and species upon species abundance and prevalence are given. Regression coefficient estimates are provided with associated standard errors and P-values. Within each variable, regression coefficients are expressed as the departure from a reference level (C. catinatum, mare, premise 2, for the species, horse sex and premise variable, respectively). Interaction estimates correspond to the deviation of a given species in stallions in comparison to mares. Age was fitted as a covariate. (XLS 68 kb)
DOI: 10.6084/m9.figshare.6208754.v1
title: Additional file 7: of Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

description: Table S6. Species intensity and prevalence modelling output. Model estimates of the regression of horse age, premise, strongyle species, horse sex and interaction between horse sex and species upon species abundance and prevalence are given. Regression coefficient estimates are provided with associated standard errors and P-values. Within each variable, regression coefficients are expressed as the departure from a reference level (C. catinatum, mare, premise 2, for the species, horse sex and premise variable, respectively). Interaction estimates correspond to the deviation of a given species in stallions in comparison to mares. Age was fitted as a covariate. (XLS 68 kb)
DOI: 10.6084/m9.figshare.6208745
title: Additional file 1: of Complex patterns of response to oral hygiene instructions: longitudinal evaluation of periodontal patients

description: Clinical, demographic, and genotyping data used in this study. (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.6208745.v1
title: Additional file 1: of Complex patterns of response to oral hygiene instructions: longitudinal evaluation of periodontal patients

description: Clinical, demographic, and genotyping data used in this study. (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.6208730
title: Additional file 6: of Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

description: Table S5. Pairwise regression coefficients between the 13 most abundant species. To test for species interactions in terms of abundance, species counts were regressed upon other species intensity in a pair-wise manner after accounting for environmental variables (horse sex and sampling site) and by means of a Poisson regression. The pairwise regression estimates for the 13 species with than 200 individuals across horses are provided. (XLS 71 kb)
DOI: 10.6084/m9.figshare.6208730.v1
title: Additional file 6: of Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

description: Table S5. Pairwise regression coefficients between the 13 most abundant species. To test for species interactions in terms of abundance, species counts were regressed upon other species intensity in a pair-wise manner after accounting for environmental variables (horse sex and sampling site) and by means of a Poisson regression. The pairwise regression estimates for the 13 species with than 200 individuals across horses are provided. (XLS 71 kb)
DOI: 10.6084/m9.figshare.6208706
title: Additional file 5: of Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

description: Table S4. Co-occurrence probabilities between species. For each strongyle species pair, the observed and expected co-occurences are reported as well as the probability of co-occurrence. In each case, the probability of negative interaction or positive interaction are provided and significant interactions are highlighted in red. (XLS 49 kb)
DOI: 10.6084/m9.figshare.6208706.v1
title: Additional file 5: of Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

description: Table S4. Co-occurrence probabilities between species. For each strongyle species pair, the observed and expected co-occurences are reported as well as the probability of co-occurrence. In each case, the probability of negative interaction or positive interaction are provided and significant interactions are highlighted in red. (XLS 49 kb)
DOI: 10.6084/m9.figshare.6208679
title: Additional file 3: of Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

description: Table S3. Species worm counts distinguishing adult female and adult male worms for every horse. Female and male worm counts are provided for each horse (in rows) and strongyle species (in column). (XLS 79 kb)
DOI: 10.6084/m9.figshare.6208679.v1
title: Additional file 3: of Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

description: Table S3. Species worm counts distinguishing adult female and adult male worms for every horse. Female and male worm counts are provided for each horse (in rows) and strongyle species (in column). (XLS 79 kb)
DOI: 10.6084/m9.figshare.6208661
title: Additional file 2: of Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

description: Table S2. List of previously published papers on prevalence and relative abundance for equine strongylids. The list of papers (with digital object identifier and link to PubMed reference) used for comparing observed strongyle species prevalence and relative abundance with previous results obtained across different countries is provided. (XLS 60 kb)
DOI: 10.6084/m9.figshare.6208661.v1
title: Additional file 2: of Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

description: Table S2. List of previously published papers on prevalence and relative abundance for equine strongylids. The list of papers (with digital object identifier and link to PubMed reference) used for comparing observed strongyle species prevalence and relative abundance with previous results obtained across different countries is provided. (XLS 60 kb)
DOI: 10.6084/m9.figshare.6208652
title: Additional file 1: of Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

description: Table S1. Individual worm counts and associated metadata relative to each of the 48 horses considered: sex, breed, year of birth, premise, premise type, pre-treatment faecal egg count and worm counts for each nematode species. (XLS 72 kb)
DOI: 10.6084/m9.figshare.6208631
title: Additional file 3: of Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity

description: Table S2. Number of leaves per lineage in the complete and reduced MTB tree showed in Fig. 3 (TXT 174 bytes)
DOI: 10.6084/m9.figshare.6208631.v1
title: Additional file 3: of Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity

description: Table S2. Number of leaves per lineage in the complete and reduced MTB tree showed in Fig. 3 (TXT 174 bytes)
DOI: 10.6084/m9.figshare.6208619
title: Additional file 2: of Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity

description: Table S1. Accession numbers used for the MTB tree. (TXT 341 kb)