cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.nh448
title: Data from: Effective number of breeders, effective population size and their relationship with census size in an iteroparous species, Salvelinus fontinalis

description: Effective number of breeders, Nb, effective population size, Ne,
 iteroparity, small population size, brook trout, age at maturation
 Abstract: The relationship between the effective number of breeders (Nb)
 and the generational effective size (Ne) has rarely been examined
 empirically in species with overlapping generations and iteroparity. Based
 on a suite of 11 microsatellite markers we examine the relationship
 between Nb, Ne, and census population size (Nc) in 14 brook trout
 (Salvelinus fontanels) populations inhabiting 12 small streams in Nova
 Scotia and sampled at least twice between 2009 and 2015. Unbiased
 estimates of Nb obtained with individuals of a single cohort, adjusted on
 the basis of age at first maturation (α) and adult life span (AL) were
 from 1.66 to 0.24 times the average estimates of Ne obtained with random
 samples of individuals of mixed ages [i.e., N ̂(b(adj2))/〖mean(N ̂
 (e(mixed ages)))]. In turn, these differences led to adjusted Ne estimates
 that were from nearly 5 to 0.7 times the estimates derived from mixed aged
 individuals. These differences translate into the same range of variation
 in the ratio of effective to census population size (N ̂_(e(adj2))N ̂_c)
 within populations. Adopting N ̂(e(adj2)) as the more precise and unbiased
 estimates, we found that these brook trout populations differ markedly in
 their effective to census population sizes (range ~0.3 to ~0.001). Using
 AgeNe we then show that the variance in reproductive success or
 reproductive skew varied among populations by a factor of 40 from a Vk/k≈5
 to 200. These results suggest wide differences in population dynamics
 likely resulting from differences in productivity affecting the intensity
 of competition for access to mates or redds and thus, reproductive skew.
 Understanding the relationship between Ne, Nb and Nc and how these relate
 to population dynamics and fluctuations in population size are important
 for the design of robust conservation strategies in small populations with
 overlapping generations and iteroparity.
description: Copy of Brook Trout
 Genotypes - December 17 2015excel file containing
 multilocus genotypes for 11 microsatellite loci in 1783 brook trout
 individuals from 14 locations in 12 streams
DOI: 10.5061/dryad.5sq0q18
title: Data from: Prevalence of tobacco use and perceptions of student health professionals about cessation training: results from Global Health Professions Student Survey

description: Introduction: Health professionals who use tobacco may be deterred from
 providing cessation advice and counseling to their patients. We aimed to
 provide prevalence estimates of tobacco use among student health
 professionals and describe their attitudes towards tobacco cessation
 training. Methods: Country-wise aggregate data from the Global Health
 Professions Student Survey (GHPSS) on ‘current cigarette smoking’ (smoking
 cigarettes on one or more days during past 30 days), and ‘current use of
 tobacco products other than cigarettes’ (chewing tobacco, snuff, bidis,
 cigars, or pipes one or more days during the past 30 days) were analysed.
 For each World Health Organisation (WHO) regions, we estimated mean
 prevalence rates of tobacco use weighted by the population of sampling
 frame and aggregate proportions for ‘health professionals’ role’ and
 ‘cessation training’ indicators using ‘metaprop’ command on stata 11.
 Results: A total of 107,527 student health professionals participated in
 236 surveys done in four health professions disciplines spanning 70
 countries with a response rates ranging from 40% to 100%. Overall,
 prevalence of smoking was highest in European countries (20%, medical and
 40%, dental students) and Americas (13%, pharmacy to 23%, dental
 students). Other tobacco use was higher in eastern Mediterranean (10-23%)
 and European countries (7-13%). In most WHO regions, ≥70% of the students
 agreed that health professionals are role models, and have a role in
 advising about smoking cessation to their patients and public. Only ≤33%
 of all student health professionals in most WHO regions (except 80% dental
 students in Eastern Mediterranean) had received formal training on smoking
 cessation approaches and ≥80% of all students agreed that they should
 receive formal cessation training. Conclusions: Tobacco control should
 take place together with medical educators to discourage tobacco use among
 student health professionals and implement an integrated smoking cessation
 training into health professions curricula.
description: Tobacco use prevalence
 for DYRADThe data file provides
 the prevalence of tobacco use and cessation training indicators by
 countries surveyed in GHPSS and six WHO regions as well as aggregate
 estimates for WHO regions reported by gender for four health professions
 disciplines namely medicine, dentistry, nursing and
 pharmacy.Tobacco use prevalence and
 cessation training indicators for
 DYRAD.xlsx
DOI: 10.5061/dryad.p3v0kt3
title: Data from: Macronutrients and micronutrients drive trade-offs between male pre- and post-mating sexual traits

description: Nutrition fundamentally affects growth and reproduction, and identifying
 how nutrient intakes are linked to the expression of these life-history
 traits can advance understanding of the mechanisms underlying life history
 trade-offs. Males are thought to face trade-offs between the allocation of
 resources to pre-mating secondary sexual traits for gaining access to
 females and allocation to post-mating traits such as ejaculate quality
 that affects their fertility. We used the Geometric Framework for
 nutrition to examine the effects of macronutrient and micronutrient
 consumption on lifespan and the expression of pre- and post-mating sexual
 traits in male field crickets Teleogryllus oceanicus. We found that
 lifespan was maximized on diets with a low protein to carbohydrate (P:C)
 ratio, while pre-mating sexual traits (courtship song and cuticular
 hydrocarbons) were maximized on high P:C ratios. In contrast, sperm
 viability, a post-mating trait, was lowest on high P:C ratio diets. Higher
 consumption of micronutrients decreased lifespan and the general
 abundances of CHCs, but improved the performance of sperm viability and
 courtship song. We show that different macronutrients are not simply
 calories to be allocated to different traits, but directly determine the
 expression of different life history traits and mediate their trade-offs.
 We also highlight the importance of including micronutrients in the
 assessment of nutritional effects on the expression of life history
 traits.
description: Ng et al_2018_Functional
 Ecology_raw dataExcel spreadsheet
 containing the individual data of various life history traits with their
 protein, carbohydrate and micronutrient intakes.
DOI: 10.5061/dryad.57v6627
title: Data from: Phenotypic plasticity in genitalia: baculum shape responds to sperm competition risk in house mice

description: Males are known to adjust their expenditure on testes growth and sperm
 production in response to sperm competition risk. Genital morphology can
 also contribute to competitive fertilisation success but whether male
 genital morphology can respond plastically to the sperm competition
 environment has received little attention. Here, we exposed male house
 mice to two different sperm competition environments during their sexual
 development and quantified phenotypic plasticity in baculum morphology.
 The sperm competition environment generated plasticity in body growth.
 Males maturing under sperm competition risk were larger and heavier than
 males maturing under no sperm competition risk. We used a landmark-based
 geometric morphometric approach to measure baculum size and shape.
 Independent of variation in body size, males maintained under risk of
 sperm competition had a relatively thicker and more distally extended
 baculum bulb compared with males maintained under no sperm competition
 risk. Plasticity in baculum shape paralleled evolutionary responses to
 selection from sperm competition reported in previous studies of house
 mice. Our findings provide experimental evidence of socially mediated
 phenotypic plasticity in male genitalia.
description: Baculum_Landmarks_dataTPS file with baculum raw landmarks for each specimen. Specimen numbers/ID can be matched with ID at the morphological data excel spreadsheet (Morphological_Data)Femur_Landmarks_dataTPS file with right hind femur raw landmarks for each specimen. Specimen numbers/ID can be matched with ID at the morphological data excel spreadsheet (Morphological_Data)Baculum_Reliability_dataTPS file with baculum raw landmarks of a subset of the individuals. For the same individual, we have two sets of landmarks. Used to assess the repeatability of landmark placement. Specimen numbers/ID can be matched with ID at the morphological data excel spreadsheetFemur_Reliability_dataTPS file with right hind femur raw landmarks of a subset of the individuals. For the same individual, we have two sets of landmarks. Used to assess the repeatability of landmark placement. Specimen numbers/ID can be matched with ID at the morphological data excel spreadsheetMorphological_DataExcel spreadsheet containing the morphological data plus the identifiers of each individual
DOI: 10.5061/dryad.c8qq7
title: Data from: Fitness consequences of outcrossing in a social spider with an inbreeding mating system

description: Inbreeding mating systems are uncommon because of inbreeding depression.
 Mating among close relatives can evolve, however, when outcrossing is
 constrained. Social spiders show obligatory mating among siblings. In
 combination with a female-biased sex ratio, sib-mating results in small
 effective populations. In such a system high genetic homozygosity is
 expected, and drift may cause population divergence. We tested the effect
 of outcrossing in the social spider Stegodyphus dumicola. Females were
 mated to sib-males, to a non-nestmate within the population, or to a male
 from a distant population, and fitness traits of F1s were compared. We
 found reduced hatching success of broods from between-population crosses,
 suggesting the presence of population divergence at a large geographical
 scale that may result in population incompatibility. However, a lack of a
 difference in offspring performance between inbred and outbred crosses
 indicates little genetic variation between populations, and could suggest
 recent colonisation by a common ancestor. This is consistent with
 population dynamics of frequent colonisations by single sib-mated females
 of common origin, and extinctions of populations after few generations.
 While drift or single mutations can lead to population divergence at a
 relatively short time scale, it is possible that dynamic population
 processes homogenize these effects at longer time scales.
description: 13-0130.R2Data on F1 generation of inbreeding and outbreeding crossings. Collected under semi-natural conditions. Data files were created using windows 7 in excel.
DOI: 10.5061/dryad.f0ph9
title: Data from: Habitat hotspots of common and rare tropical species along climatic and edaphic gradients

description: 1. Understanding coexistence in high biodiversity ecosystems requires
 knowledge of how rare and common species share the multidimensional
 environmental space. Climatic and edaphic conditions can provide a
 plethora of habitats, supporting different compositional and structural
 communities where species can adapt and differentiate. 2. We used a large
 dataset consisting of 580 tropical tree species sampled in 163 25×25 m
 quadrats along an altitudinal gradient covering an area of 160 km2 of
 tropical rainforest in Jianfengling reserve (Hainan Island, China). For
 each plot the data include tree species and abundance, altitude and six
 soil properties from which a two dimensional environmental space was
 constructed. 3. With this extensive dataset we tested the hypothesis that
 different combination of environmental factors can generate multiple
 hotspots on three axes of diversity: species richness, Shannon-equivalent
 species richness and habitat preference, a measure of evenness in the
 distribution of individuals across an environmental gradient. 4. We found
 that humid and cool areas with more nitrogen availability were occupied by
 richer and more diverse communities of wide range species. Rare (in terms
 of number of individuals) and range restricted species instead, tended to
 prefer minor habitats, generally warmer with high potassium, calcium,
 magnesium and, in particular, phosphorous. As a result, wide and range
 restricted species were segregated across the environmental space. 5.
 Synthesis. Our findings indicate rare species tend to occur more
 frequently where common species are less abundant. A clear pattern of
 species richness and diversity was driven by a combination of several
 environmental factors (soil properties and climate). The complexity of the
 environment not only explains the different species distribution along
 each habitat, but also determines the relative abundance of each species
 in the entire community. Although some habitats have low species richness
 and diversity, they are highly preferred by rare species; therefore
 biodiversity conservation efforts should consider protecting these fragile
 ecosystems.
description: environmental data for
 the 163 plotsThis file lists seven
 environmental variables for 163 plots used in the
 paper.environmental
 data.csv580 species in the 163
 plotsThis file lists the 580
 species in the 163 plots used in this paper.580 species in 163
 plots.csv
DOI: 10.5061/dryad.6k09k
title: Data from: Reticulate evolution and sea-level fluctuations together drove species diversification of slipper orchids (Paphiopedilum) in Southeast Asia

description: South-East Asia covers four of the world's biodiversity hotspots,
 showing high species diversity and endemism. Owing to the successive
 expansion and contraction of distribution and the fragmentation by
 geographical barriers, the tropical flora greatly diversified in this
 region during the Tertiary, but the evolutionary tempo and mode of species
 diversity remain poorly investigated. Paphiopedilum, the largest genus of
 slipper orchids comprising nearly 100 species, is mainly distributed in
 South-East Asia, providing an ideal system for exploring how plant species
 diversity was shaped in this region. Here, we investigated the
 evolutionary history of this genus with eight cpDNA regions and four
 low-copy nuclear genes. Discordance between gene trees and network
 analysis indicates that reticulate evolution occurred in the genus.
 Ancestral area reconstruction suggests that vicariance and long-distance
 dispersal together led to its current distribution. Diversification rate
 variation was detected and strongly correlated with the species diversity
 in subg. Paphiopedilum (~80 species). The shift of speciation rate in
 subg. Paphiopedilum was coincident with sea-level fluctuations in the late
 Cenozoic, which could have provided ecological opportunities for
 speciation and created bridges or barriers for gene flow. Moreover, some
 other factors (e.g. sympatric distribution, incomplete reproductive
 barriers and clonal propagation) might also be advantageous for the
 formation and reproduction of hybrid species. In conclusion, our study
 suggests that the interplay of reticulate evolution and sea-level
 fluctuations has promoted the diversification of the genus Paphiopedilum
 and sheds light into the evolution of Orchidaceae and the historical
 processes of plant species diversification in South-East Asia.
description: Alignment of the
 sequences upload to Dryad_GYY_20141211BEAST input file and
 output fileMP and BI tree
 filesSplitsTree_input
 file
DOI: 10.5061/dryad.6t6gp
title: Data from: Crown asymmetry in high latitude forests: disentangling the directional effects of tree competition and solar radiation

description: Light foraging by trees is a fundamental process shaping forest
 communities. In heterogeneous light environments this behavior is
 expressed as plasticity of tree growth and the development of structural
 asymmetries. We studied the relative influence of neighborhood structure
 and directional solar radiation on horizontal asymmetry of tree crowns in
 late-successional high latitude (67–68°N) forests in northern
 Fennoscandia. We described crown asymmetries as crown vectors (i.e.
 horizontal vectors from stem center to crown center), which we obtained
 from canopy maps based on crown perimeter measurements in the field. To
 disentangle the influence of the two main determinants, inter-tree
 competition and directionality of above-canopy solar radiation at high
 latitudes, we applied circular statistical models, utilizing cylindrical
 distributions, to these data consisting of orientations and intensities of
 crown asymmetry. At the individual tree level, our model predicted crown
 asymmetry vectors from the current stand structure, and the predictions
 became better when the intensity of asymmetry (i.e. crown vector length)
 was higher. Competition was the main determinant of crown asymmetry for
 2/3 of trees, and the model predictions improved when we incorporated the
 directionality of solar radiation. At the stand-level, these asymmetries
 had resulted in a small increment of the projected canopy area and an
 increased regularity of spatial structure. Our circular statistical
 modelling approach provided a quantitative evaluation of the relative
 importance of directionality of solar radiation and neighborhood stand
 structure, showing how both of these factors play a role in formation of
 crown asymmetries in high latitude forests. This approach further
 demonstrated the applicability of circular statistical modeling in
 ecological studies where the response variable has both orientation and
 intensity.
description: Field measurement
 dataThe file contains field
 measurements of trees, including site (1 to 48), coordinates (x,y,z, in
 meters), tree diameter and height, species, crown centroid location (x, y,
 in meters), and crown vector length (in meters) and direction
 (degrees).field
 data.txt
DOI: 10.5061/dryad.rt1kg
title: Data from: Impact of forestry practices at a landscape scale on the dynamics of amphibian populations

description: Forest loss is a primary cause of worldwide amphibian decline. Timber
 harvesting in the United States has caused dramatic changes in quality and
 extent of forest ecosystems, and intensive forest management still occurs.
 Although numerous studies have documented substantial reductions in
 amphibian densities related to timber harvest, subsequent extinctions are
 rare. To better understand the population dynamics that have allowed so
 many amphibian species to persist in the face of widespread forest
 disturbance, we developed spatially explicit metapopulation models for
 four forest-dependent amphibian species (Lithobates sylvaticus, Ambystoma
 opacum, A. talpoideum, and A. maculatum) that incorporated demographic and
 habitat selection data derived from experiments conducted as part of the
 Land Use Effects on Amphibian Populations Project (LEAP). We projected
 local and landscape-scale population persistence under 108 different
 forestry practice scenarios, varying treatment (partial cut, clear-cut
 with coarse woody debris [CWD] removed, and clear-cut with CWD retained),
 cut patch size (1, 10, or 50 ha), total area cut (10, 20, or 30%), and
 initial amphibian population size (5, 50, or 500 adult females per local
 breeding population). Under these scenarios, landscape-scale extinction
 was highly unlikely, occurring in &lt;1% of model runs and for only 2
 of the 4 species, because landscape-scale populations were able to persist
 via dispersal even despite frequent local extinctions. Yet for all
 species, population sizes were reduced to ~50% in all clear-cut scenarios,
 regardless of the size of harvested patches. These findings suggest that
 debate over timber harvesting on pool-breeding amphibian populations in
 the United States should focus not on questions of landscape-scale
 extinction but on the ecological consequences of dramatic reductions in
 amphibian biomass, including changes in trophic interactions, nutrient
 cycling, and energy transfer. Additionally, we conclude that amphibian
 declines and extinctions are far more likely to occur as a result of
 permanent habitat loss resulting from development than from the temporary
 degradation of habitat caused by current forestry practices.
description: AMMA 10x10k
 loopsMatlab code for
 Ambystoma maculatumAMTA 10x10k
 loopsMatlab code for
 Ambystoma talpoideum populationsRASY 10x10km
 loopsMatlab code for
 Lithobates sylvaticus populationsAMOP 10x10k
 loopsMatlab code for
 Ambystoma opacum populations
DOI: 10.15468/dl.cu8dqz
title: Occurrence Download

description: A dataset containing 159276 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spiranthes"
 ]
}

 The dataset includes 159276 records from 1272 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000664-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mad4sd
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Astragalus membranaceus"
 ]
}

 The dataset includes 107 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025825-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16892487
title: Survey Data on Application Development Method Selection (AHP) at one of Oil and Gas Company in Indonesia

description: Dataset of Survey Result for Application Development Method Selection using Analytical Hierarchy Process at one of Oil and Gas Company in Indonesia