cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kx4gp6
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-8.95744 43.40096,-9.94151 42.58848,-9.7088 39.08777,-9.10011 36.80811,-6.76043 37.01723,-5.71424 36.17732,-1.87534 36.64447,-0.57051 37.4021,0.22029 37.71554,0.73431 38.77135,2.23683 42.17257,-2.05256 43.47693,-7.49277 43.77983,-7.89518 43.82513,-8.95744 43.40096))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Euphorbia uliginosa Welw. ex Boiss."
 ]
}

 The dataset includes 45 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000084-250402095845217/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.2909/77873ff3-4edf-48d4-94cd-c5b7b61da29e
title: Forest Type 2018 - Present (raster 10m), Europe, 3-yearly, Nov. 2024

description: The High Resolution Layer Forest Type (FTY) provides a forest classification with 3 thematic classes (all non-forest areas / broadleaved forest / coniferous forest) at 10m spatial resolution and with a Minimum Mapping Unit (MMU) of 0.5 ha. This raster layer is largely following the FAO (Food and Agriculture Organisation of the United Nations) forest definition with tree covered areas in agricultural and urban context excluded using the respective Forest Additional Support Layer (FADSL).

This dataset is provided on a 3-yearly frequency in 10 meter rasters (fully conformant with the EEA reference grid) in 100 x 100 km tiles covering the EEA38 countries.

High Resolution Layer Tree Cover and Forest product is part of the European Union’s Copernicus Land Monitoring Service.

This dataset includes data from the French Overseas Territories (DOMs)
DOI: 10.15468/dl.hsrcsb
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cydalima perspectalis (Walker, 1859)"
 ]
}

 The dataset's 3 records were derived from 553 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000080-250402095845217/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.2909/4dc35722-09ce-427f-9a1b-775a8640da27
title: Tree Cover Density 2018 - Present (raster 100m), Europe, yearly, Nov. 2024

description: The High Resolution Layer Tree Cover Density (TCD) dataset provides information on the proportional crown coverage per pixel at 100 meter spatial resolution and ranges from 0% (all non-tree covered areas) to 100%, whereby Tree Cover Density is defined as the "vertical projection of tree crowns to a horizontal earth’s surface“. This product is an aggregation of its corresponding high resolution dataset.

This dataset is provided annually starting with 2018 in 100 meter rasters (fully conformant with the EEA reference grid) in 100 x 100 km tiles covering the EEA38 countries.

High Resolution Layer Tree Cover and Forest product is part of the European Union’s Copernicus Land Monitoring Service.
DOI: 10.6084/m9.figshare.28715054
title: Dataset of Nepali Ethnic Groups Facial Emotion

description: This dataset comprises 1,045 images capturing various human emotions, including happy, sad, disgust, fearful, neutral, surprised, and angry. The images feature individuals from diverse cultural and ethnic backgrounds in Nepal, ensuring inclusivity and a wide range of facial expressions. Each image portrays natural human emotions, making the dataset valuable for AI-based emotion recognition models, psychological analysis, human-computer interaction improvements, and facial recognition enhancements
DOI: 10.5255/ukda-sn-857734
title: Transcribed Historic Data from the Last Recorded Smallpox Outbreaks in Somalia, 1976-1977

description: Smallpox, caused by the variola virus, was responsible for millions of deaths worldwide before its eradication was declared by the World Health Assembly in 1980. While modern disease outbreaks are modelled using contemporary data, the potential use of smallpox as a bioterrorist threat remains a concern, continuing to generate debate about the most effective modelling strategies to inform public health preparedness. Understanding how to control an eradicated disease like smallpox relies on the analysis of historical data.

This study focuses on transcribed smallpox outbreak data from Somalia’s last recorded outbreaks (1976–1977), which were not only the final outbreaks in Somalia but also the last naturally occurring smallpox outbreaks in the world. The original handwritten records, obtained from the World Health Organization by a Public Health England (now UK Health Security Agency) study team, were digitized from PDF format into a Microsoft Excel worksheet through manual transcription. To ensure data accuracy and consistency, rigorous validation processes were applied. The resulting line-list dataset comprises 3,255 recorded cases of variola minor smallpox and includes key epidemiological variables: national case series number, age, sex, date of rash onset, date detected, village/locality, district, region, regional outbreak number, and national outbreak number.

The primary goal of this project is to make these historical data globally accessible to epidemiologists and infectious disease modelers, enhancing our understanding of smallpox transmission dynamics in Somalia during the eradication period and informing strategies for potential future outbreaks in naïve populations. This data transcription forms part of a broader initiative, which also includes:

1. A descriptive epidemiological study characterizing smallpox cases and estimating incidence rates during the final outbreaks.
2. A modelling study estimating the basic reproduction number (R) for smallpox using two different disease dynamic models.

By preserving and analyzing these historical data, this project provides valuable insights for infectious disease preparedness and response, bridging past experiences with future public health strategies.
DOI: 10.2909/82f93572-9888-47ef-97a1-5cac5985a26a
title: Dominant Leaf Type 2018 - Present (raster 10m), Europe, yearly, Nov. 2024

description: The High Resolution Dominant Leaf Type (DLT) raster product provides a basic land cover classification with 3 thematic classes (all non-tree covered areas, broadleaved and coniferous).

This dataset is provided annually starting with 2018 in 10 meter rasters (fully conformant with the EEA reference grid) in 100 x 100 km tiles covering the EEA38 countries.

High Resolution Layer Tree Cover and Forest product is part of the European Union’s Copernicus Land Monitoring Service. Confidence layer available for the dataset.

This dataset includes data from the French Overseas Territories (DOMs)
DOI: 10.15468/dl.fns7fy
title: Occurrence Download

description: A dataset containing 66 records in GBIF matching the query:

SELECT 
countrycode,
kingdom,
COUNT(*) AS occurrences
FROM occurrence
WHERE countrycode IN ('IR', 'IQ', 'KW', 'SA', 'BH', 'QA', 'AE', 'OM')
GROUP BY countrycode, kingdom
ORDER BY countrycode, kingdom;


 The dataset's 66 records were derived from 1952 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000081-250402095845217/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yeu3wx
title: Occurrence Download

description: A dataset containing 7003 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-103.60653 28.65644,-101.48972 29.4147,-98.42509 25.87616,-64.97311 25.14559,-67.40794 47.07777,-68.96612 47.62473,-72.11613 45.29139,-76.08281 44.82472,-76.75365 44.06639,-79.26199 43.27888,-81.887 41.61638,-83.22867 42.02471,-82.70367 43.86222,-83.81201 45.64139,-84.36618 46.74973,-98.20606 49.04742,-110.38605 48.94718,-125.41098 48.80433,-124.64133 40.05379,-121.10966 34.65932,-117.00243 32.22658,-115.29635 32.32136,-110.11491 31.08919,-106.29202 31.026,-103.60653 28.65644))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sus scrofa Linnaeus, 1758",
 "Year 1499-2024"
 ]
}

 The dataset includes 7003 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032726-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3608060_d3
title: Additional file 3 of Gene-specific patterns of expression variation across organs and species

description: Table S2–S7. Spreadsheet with multiple tables, from S2 to S7. Table S2. List of genome assemblies and annotation files used in the Barbosa-Morais et al. study. Table S3. List of 6283 protein-coding orthologs in the seven species studied here. Table S4. Several attributes for the 6283 orthologs. This table includes for each of the 6283 orthologs (rows), the following attributes (as columns): col 1: human gene ID (Ensembl), col 2: absolute sum of squares across organs, col 3: absolute sum of squares across species, col 4: absolute residual variation, col 5: proportion of variation across organs, col 6: proportion of variation across species, col 7: category assigned based on the proportions of variation across organs and species (see “Methods” for details), col 8: dynamic range, col 9: constrained class based on dynamic range. The final gene sets can be obtained by requiring the value in col 9 to be “unconstrained”. Table S5. List of genes identified by projection score. Table S6. List of the mouse ENCODE ChIP-seq datasets used here. Table S7. List of GTEx sample IDs used in the variance decomposition. (XLSX 777 kb)
DOI: 10.6084/m9.figshare.c.3608078_d1
title: Additional file 5 of A benchmark for microRNA quantification algorithms using the OpenArray platform

description: miRcompData R package source. The source code for the miRcompData R package, also available at: http://bioconductor.org/packages/miRcompData/ . (GZ 8765 kb)
DOI: 10.6084/m9.figshare.c.3608084_d1
title: Additional file 1 of Why and how genetic canalization evolves in gene regulatory networks

description: Figures S2 and S1. Ploidy level. Figure S2. Effect of ploidy on the evolution of expression and canalization. Solid lines stand for diploid populations, dashed lines for haploid populations, and dotted lines for haploid populations with σ m ′ = 2 1 / 2 σ m $\sigma _{m}^{\prime } = 2^{1/2} \sigma _{m}$ for the canalization tests (to compensate the increase in mutational effect that comes from the second unchanged haplotype in diploids). Subfigure indexes match figure numbers from the main text. (2a)(2b) Evolution of gene expression and canalization in networks in which genes are selected towards an intermediate optimum. (4a)(4b) Evolution of gene expression and canalization in networks in which genes are selected towards extreme expression. Figure S3. Effect of simulation parameters on canalization in haploid vs. diploid populations. Average and s.d. canalization scores at G=10,000 generations; two genes out of six are under direct selection pressure. Solid lines stand for diploid populations, dashed lines for haploid populations. Subfigure indexes match figure numbers from the main text. (3a) Network complexity c. (3b) Constitutive gene expression a. (3c) Mutation rate μ. (3d) Effect of a mutation σ m . (3e) Strength of stabilizing selection s. (3f) Fitness optimum θ. (5b) Population size N. (5b) Network size L. (ZIP 14 kb)
DOI: 10.6084/m9.figshare.c.3608078_d3
title: Additional file 2 of A benchmark for microRNA quantification algorithms using the OpenArray platform

description: R script to create figures. The R script used to generate Figures 2â  9 presented in this manuscript. (R 5.11 KB)
DOI: 10.6084/m9.figshare.c.3608078_d4
title: Additional file 3 of A benchmark for microRNA quantification algorithms using the OpenArray platform

description: R script to create supplementary figures. The R script used to generate Supplementary Figures 2-7. (R 5.33 KB)
DOI: 10.6084/m9.figshare.c.3608078_d6
title: Additional file 4 of A benchmark for microRNA quantification algorithms using the OpenArray platform

description: miRcomp R package source. The source code for the miRcomp R package, also available at: http://bioconductor.org/packages/miRcomp/ . (GZ 1802 kb)
DOI: 10.6084/m9.figshare.c.3608078_d7
title: Additional file 1 of A benchmark for microRNA quantification algorithms using the OpenArray platform

description: miRcomp package vignette. The miRcomp vignette describes standard use of the package as well as additional options and functionality not presented in this manuscript. (HTML 2017 kb)
DOI: 10.6084/m9.figshare.c.3608162_d2
title: Additional file 1: of Association between maternal depression and child stunting in Northern Ghana: a cross-sectional study

description: Study dataset. (DTA 53Â kb)
DOI: 10.6084/m9.figshare.c.3608177_d3
title: Additional file 1: Table S1. of Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions

description: Genome annotation of Rhizobium leucaenae strain CFN 299T and correspondence with CDS of strain CPAO 29.8 and other related rhizobial genomes. Based on RAST and manual curation. (XLSX 3313 kb)
DOI: 10.6084/m9.figshare.c.3608180_d2
title: Additional file 4: Table S3. of Analysis of ethanol fermentation mechanism of ethanol producing white-rot fungus Phlebia sp. MG-60 by RNA-seq

description: Data for Phlebia sp. MG-60 transcripts. (XLSX 3497Â kb)
DOI: 10.6084/m9.figshare.28021571
title: <b>R</b><b>esin-coated urea</b><b> </b><b>effectively simulates the chronic dynamics of natural nitrogen deposition</b>

description: Here, we designed 9 resin-coated urea fertilizers with three fertilizer particle sizes and three thicknesses of the coating with the goal of identifying the combination that would release N continuously throughout a year in a semiarid area. Then, we measured the rate of N deposition in a semi-arid system, the release rate of the coated urea,and the precipitation and tested whether the release of the coated urea provided an effective proxy for the temporal dynamics of natural N deposition.
DOI: 10.6084/m9.figshare.c.3608180_d8
title: Additional file 9: Table S7. of Analysis of ethanol fermentation mechanism of ethanol producing white-rot fungus Phlebia sp. MG-60 by RNA-seq

description: Orthologous analysis of Phlebia sp. MG-60 and P. chrysosporium. (XLSX 6512Â kb)
DOI: 10.6084/m9.figshare.c.3608240_d2
title: Additional file 2: of Improving prediction models with new markers: a comparison of updating strategies

description: Script 1. R-scripts for running the simulation study. (R 9Â kb)
DOI: 10.6084/m9.figshare.c.3608249_d1
title: Additional file 1: of Cyclin D1 as a therapeutic target of renal cell carcinoma- a combined transcriptomics, tissue microarray and molecular docking study from the Kingdom of Saudi Arabia

description: Differentially expressed genes of RCC from Saudi patients on comparing RCC with normal kidney tissue. Transcriptomics profiling revealed 1490 differentially expressed genes, 1034 up-regulated and 456 down-regulated, with fold change ≥ 2 and p-value
DOI: 10.6084/m9.figshare.c.3608240_d3
title: Additional file 3: of Improving prediction models with new markers: a comparison of updating strategies

description: Script 2. R-script containing functions used for running the simulation study. (R 2Â kb)
DOI: 10.15468/dl.xsy8rk
title: Occurrence Download

description: A dataset containing 3379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Leopardus guigna (Molina, 1782)"
 ]
}

 The dataset includes 3379 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032727-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3608261_d5
title: Additional file 3: Table S2. of A novel cutoff for the waist-to-height ratio predicting metabolic syndrome in young American adults

description: NHANES Source Variables Used for Validation Analysis (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3608261_d6
title: Additional file 4: Table S3. of A novel cutoff for the waist-to-height ratio predicting metabolic syndrome in young American adults

description: Descriptives Statistics: Subsample of National Health and Nutrition Examination Survey, 2005-2008, n = 1 236 (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3608303_d2
title: Additional file 2: of Water heater temperature set point and water use patterns influence Legionella pneumophila and associated microorganisms at the tap

description: Correlation Analysis. This contains all correlations analyses of quantitative polymerase chain reaction assays. (XLSX 24.2 kb)
DOI: 10.6084/m9.figshare.c.3608384_d1
title: MOESM3 of Systems analysis of methylerythritol-phosphate pathway flux in E. coli: insights into the role of oxidative stress and the validity of lycopene as an isoprenoid reporter metabolite

description: Additional file 3. SRM proteomics data. Contains Skyline output: raw and normalized data for transition, peptide and protein counts.
DOI: 10.6084/m9.figshare.c.3608366_d3
title: MOESM6 of Transcriptome profiling of Camelina sativa to identify genes involved in triacylglycerol biosynthesis and accumulation in the developing seeds

description: Additional file 6: Table S6. GO information for the DEGs differentially regulated in Cs-14.
DOI: 10.6084/m9.figshare.c.3608366_d4
title: MOESM2 of Transcriptome profiling of Camelina sativa to identify genes involved in triacylglycerol biosynthesis and accumulation in the developing seeds

description: Additional file 2: Table S2. List of Camelina genes with the highest RPKM values.
DOI: 10.6084/m9.figshare.c.3608387_d1
title: Additional file 3: of How do Malawian women rate the quality of maternal and newborn care? Experiences and perceptions of women in the central and southern regions

description: PNC Exit Interview Questionnaire.
DOI: 10.6084/m9.figshare.c.3608387_d2
title: Additional file 1: of How do Malawian women rate the quality of maternal and newborn care? Experiences and perceptions of women in the central and southern regions

description: ANC Exit Interview Questionnaire.
DOI: 10.6084/m9.figshare.c.3608366_d5
title: MOESM4 of Transcriptome profiling of Camelina sativa to identify genes involved in triacylglycerol biosynthesis and accumulation in the developing seeds

description: Additional file 4: Table S4. Results of the comparative transcriptome analysis.
DOI: 10.6084/m9.figshare.c.3608384_d3
title: MOESM2 of Systems analysis of methylerythritol-phosphate pathway flux in E. coli: insights into the role of oxidative stress and the validity of lycopene as an isoprenoid reporter metabolite

description: Additional file 2. SWATH proteomics data. Contains a) PeakView output: raw data for ion, peptide and protein counts; b) output of statistical analysis: differentially expressed proteins during stationary phase.
DOI: 10.6084/m9.figshare.c.3608366_d6
title: MOESM5 of Transcriptome profiling of Camelina sativa to identify genes involved in triacylglycerol biosynthesis and accumulation in the developing seeds

description: Additional file 5: Table S5 List of Camelina genes involved in lipid metabolism.
DOI: 10.6084/m9.figshare.c.3608387_d3
title: Additional file 2: of How do Malawian women rate the quality of maternal and newborn care? Experiences and perceptions of women in the central and southern regions

description: Delivery Exit Interview Questionnaire.
DOI: 10.6084/m9.figshare.c.3608429_d5
title: Additional file 3: Table S1. of NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites

description: Percent of reads with mismatch at the 1st base (% X1) and 2nd base (% X2).
DOI: 10.6084/m9.figshare.c.3608447_d1
title: Additional file 2: of Interferon regulatory factor 7 regulates airway epithelial cell responses to human rhinovirus infection

description: This excel file contains the list of biological pathways that were upregulated by HRV in HBE cells transfected with the all-star control siRNA. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3608447_d2
title: Additional file 7: of Interferon regulatory factor 7 regulates airway epithelial cell responses to human rhinovirus infection

description: This excel file contains the results from an Upstream regulator analysis of the HRV responsive genes in HBE cells that were insensitive to IRF7 knockdown. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3608447_d3
title: Additional file 3: of Interferon regulatory factor 7 regulates airway epithelial cell responses to human rhinovirus infection

description: This excel file contains the list of differentially expressed genes identified in HRV-induced HBE cells transfected with IRF7-siRNA #1 versus the all-star control siRNA. (XLSX 77Â kb)
DOI: 10.6084/m9.figshare.c.3608447_d4
title: Additional file 1: of Interferon regulatory factor 7 regulates airway epithelial cell responses to human rhinovirus infection

description: This excel file contains the list of differentially expressed genes that were induced by HRV in HBE cells transfected with the all-star control siRNA. (XLSX 71Â kb)
DOI: 10.6084/m9.figshare.c.3608447_d5
title: Additional file 5: of Interferon regulatory factor 7 regulates airway epithelial cell responses to human rhinovirus infection

description: This excel file contains the results of a pathways analysis of remaining genes (after removal of known IRF7 target genes) that were decreased in HRV-induced HBE cells transfected with IRF7-siRNA#1 versus the all-star control siRNA. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3608447_d6
title: Additional file 6: of Interferon regulatory factor 7 regulates airway epithelial cell responses to human rhinovirus infection

description: This excel file contains the results of a differential gene expression analysis of IRF7 gene networks in HBE cells transfected with IRF7-siRNA#1 versus the all-star control siRNA. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3608447_d7
title: Additional file 4: of Interferon regulatory factor 7 regulates airway epithelial cell responses to human rhinovirus infection

description: This excel file contains the list of biological pathways that were decreased in HRV-induced HBE cells transfected with IRF7-siRNA#1 versus the all-star control siRNA. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3608462_d1
title: Additional file 1: of A pilot study of biomechanical assessment before and after an integrative training program for adolescents with juvenile fibromyalgia

description: Balance and Strength database. (XLSX 16 kb)
DOI: 10.5281/zenodo.14431598
title: Dataset Carbon CEF 2024
DOI: 10.5281/zenodo.14431599
title: Dataset Carbon CEF 2024
DOI: 10.6084/m9.figshare.c.3608513_d1
title: Additional file 12: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Characteristics of the 54 neogenes derived from DNA transposons in the human and RJF genomes. A table summarize the features of 54 genes derived from DNA transposons in the human and RJF genomes. (ODT 32 kb)
DOI: 10.6084/m9.figshare.c.3608492_d6
title: Additional file 4: Table S4. of Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare)

description: Genes identified in the mitochondrial genome of barley. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3608513_d2
title: Additional file 6: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Intersections between annotation files calculated with P-clouds, TRF, and REPET. Venn diagram describing the overlaps between the annotation files calculated with P-clouds, TRF (SSR), REPET (TE + DM), and CNVs [11]. Values are percentage of coverage in galGal4. (ODT 56 kb)