cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4434818
title: Combinations of antibiotics for which all E. coli lack combined resistance

description: This table lists 118 combinations of 3 antibiotics that no <i>E. coli </i>in the population we have examined encodes resistance to. Next to these combinations we have provided the result (following 1000 generations) for our simulation in terms of how many antibiotic factors, on average, genomes in the population captured along with the fold change in the population size.
DOI: 10.6084/m9.figshare.4434818.v2
title: Combinations of antibiotics for which all E. coli lack combined resistance

description: This table lists 118 combinations of 3 antibiotics that no <i>E. coli </i>in the population we have examined encodes resistance to. Next to these combinations we have provided the result (following 1000 generations) for our simulation in terms of how many antibiotic factors, on average, genomes in the population captured along with the fold change in the population size.
DOI: 10.6084/m9.figshare.4434818.v1
title: Combinations of antibiotics for which all E. coli lack combined resistance

description: This table lists 118 combinations of 3 antibiotics that no <i>E. coli </i>in the population we have examined encodes resistance to. Next to these combinations we have provided the result (following 1000 generations) for our simulation in terms of how many antibiotic factors, on average, genomes in the population captured along with the fold change in the population size.
DOI: 10.6084/m9.figshare.4434803
title: Resistance Families present in the accessory genome of E. coli

description: This file is a binary matrix denoting presence (1) or absence (0) of antibiotic resistance families in the <i>E. coli</i> population.
DOI: 10.6084/m9.figshare.4434797
title: Graphs for antibiotic resistance families

description: Each row of this table lists a graph of homologues which match another homologue in the graph to at least 95 % identity (by blastn). The first column was taken as the ID for the respective family. The graphs were calculated by MCL.
DOI: 10.6084/m9.figshare.4434797.v1
title: Graphs for antibiotic resistance families

description: Each row of this table lists a graph of homologues which match another homologue in the graph to at least 95 % identity (by blastn). The first column was taken as the ID for the respective family. The graphs were calculated by MCL.
DOI: 10.6084/m9.figshare.4434800.v1
title: Genes present in the core resistome of E. coli

description: This table lists genes we identified as present in at least 95 % of the <i>E. coli</i> genome sequences. The resistance profiles for each gene are listed.
DOI: 10.6084/m9.figshare.4434791
title: Anatomical parameters for musculoskeletal modeling of the hand and wrist

description: A musculoskeletal model of the hand and wrist can provide valuable biomechanical and neurophysiological insights, relevant for clinicians and ergonomists. Currently, no consistent data-set exists comprising the full anatomy of these upper extremity parts. The aim of this study was to collect a complete anatomical data-set of the hand and wrist, including the intrinsic and extrinsic muscles. One right lower arm, taken from a fresh frozen female specimen, was studied. Geometrical data for muscles and joints were digitized using a 3D optical tracking system. For each muscle, optimal fiber length and physiological cross-sectional area were assessed based on muscle belly mass, fiber length, and sarcomere length. A brief description of model, in which these data were imported as input, is also provided. Anatomical data including muscle morphology and joint axes (48 muscles and 24 joints) and mechanical representations of the hand are presented. After incorporating anatomical data in the presented model, a good consistency was found between outcomes of the model and the previous experimental studies.
DOI: 10.6084/m9.figshare.4434794
title: Sequence similarity scores for CARD homologue model determinants in the E. coli genome sequences

description: A large matrix (4021 x 1083) giving the sequence similarity scores that we calculated for each determinant from the CARD homologue model found in the <i>E. coli</i> population.
DOI: 10.6084/m9.figshare.4434803.v1
title: Resistance Families present in the accessory genome of E. coli

description: This file is a binary matrix denoting presence (1) or absence (0) of antibiotic resistance families in the <i>E. coli</i> population.
DOI: 10.6084/m9.figshare.4434788
title: Curation of antimicrobial resistance determinants from the CARD homologue model

description: A table showing our treatment of the factors present in the CARD homologue model to define resistance profiles for each determinant.
DOI: 10.6084/m9.figshare.4434794.v1
title: Sequence similarity scores for CARD homologue model determinants in the E. coli genome sequences

description: A large matrix (4021 x 1083) giving the sequence similarity scores that we calculated for each determinant from the CARD homologue model found in the <i>E. coli</i> population.
DOI: 10.6084/m9.figshare.4434782
title: List of genomes used in this study

description: This table lists the 4022 <i>E. coli</i> genome sequences used in this study
DOI: 10.6084/m9.figshare.4434788.v1
title: Curation of antimicrobial resistance determinants from the CARD homologue model

description: A table showing our treatment of the factors present in the CARD homologue model to define resistance profiles for each determinant.
DOI: 10.6084/m9.figshare.4434791.v1
title: Anatomical parameters for musculoskeletal modeling of the hand and wrist

description: A musculoskeletal model of the hand and wrist can provide valuable biomechanical and neurophysiological insights, relevant for clinicians and ergonomists. Currently, no consistent data-set exists comprising the full anatomy of these upper extremity parts. The aim of this study was to collect a complete anatomical data-set of the hand and wrist, including the intrinsic and extrinsic muscles. One right lower arm, taken from a fresh frozen female specimen, was studied. Geometrical data for muscles and joints were digitized using a 3D optical tracking system. For each muscle, optimal fiber length and physiological cross-sectional area were assessed based on muscle belly mass, fiber length, and sarcomere length. A brief description of model, in which these data were imported as input, is also provided. Anatomical data including muscle morphology and joint axes (48 muscles and 24 joints) and mechanical representations of the hand are presented. After incorporating anatomical data in the presented model, a good consistency was found between outcomes of the model and the previous experimental studies.
DOI: 10.6084/m9.figshare.4434776
title: Genomes with sizes in the correct range for E. coli but which are mislabelled in GenBank

description: A table providing the list of genomes we have identified as mislabelled in GenBank, despite the length of the genome being broadly typical for <i>E. coli</i>. Species designations was achieved by taking samples of the genome sequence for BLAST analysis and picking the most reliably similar species.
DOI: 10.6084/m9.figshare.4434782.v2
title: List of genomes used in this study

description: This table lists the 4022 <i>E. coli</i> genome sequences used in this study
DOI: 10.6084/m9.figshare.4434776.v1
title: Genomes with sizes in the correct range for E. coli but which are mislabelled in GenBank

description: A table providing the list of genomes we have identified as mislabelled in GenBank, despite the length of the genome being broadly typical for <i>E. coli</i>. Species designations was achieved by taking samples of the genome sequence for BLAST analysis and picking the most reliably similar species.
DOI: 10.6084/m9.figshare.4434782.v1
title: List of genomes used in this study

description: This table lists the 4022 <i>E. coli</i> genome sequences used in this study
DOI: 10.6084/m9.figshare.4434725
title: Hybrid soliwave technique for mitigating sulfate-reducing bacteria in controlling biocorrosion: a case study on crude oil sample

description: Microbiologically influenced corrosion (MIC) is among the common corrosion types for buried and deep-water pipelines that result in costly repair and pipeline failure. Sulfate-reducing bacteria (SRB) are commonly known as the culprit of MIC. The aim of this work is to investigate the performance of combination of ultrasound (US) irradiation and ultraviolet (UV) radiation (known as Hybrid soliwave technique, HyST) at pilot scale to inactivate SRB. The influence of different reaction times with respect to US irradiation and UV radiation and synergistic effect toward SRB consortium was tested and discussed. In this research, the effect of HyST treatment toward SRB extermination and corrosion studies of carbon steel coupon upon SRB activity before and after the treatment were performed using weight loss method. The carbon steel coupons immersed in SRB sample were exposed to HyST treatment at different time of exposure. Additionally, Field Emission Scanning Electron Microscopy coupled with Energy Dispersive X-ray Spectroscopy were used to investigate the corrosion morphology in verifying the end product of SRB activity and corrosion formation after treatment. Results have shown that the US irradiation treatment gives a synergistic effect when combined with UV radiation in mitigating the SRB consortium.
DOI: 10.6084/m9.figshare.4434725.v1
title: Hybrid soliwave technique for mitigating sulfate-reducing bacteria in controlling biocorrosion: a case study on crude oil sample

description: Microbiologically influenced corrosion (MIC) is among the common corrosion types for buried and deep-water pipelines that result in costly repair and pipeline failure. Sulfate-reducing bacteria (SRB) are commonly known as the culprit of MIC. The aim of this work is to investigate the performance of combination of ultrasound (US) irradiation and ultraviolet (UV) radiation (known as Hybrid soliwave technique, HyST) at pilot scale to inactivate SRB. The influence of different reaction times with respect to US irradiation and UV radiation and synergistic effect toward SRB consortium was tested and discussed. In this research, the effect of HyST treatment toward SRB extermination and corrosion studies of carbon steel coupon upon SRB activity before and after the treatment were performed using weight loss method. The carbon steel coupons immersed in SRB sample were exposed to HyST treatment at different time of exposure. Additionally, Field Emission Scanning Electron Microscopy coupled with Energy Dispersive X-ray Spectroscopy were used to investigate the corrosion morphology in verifying the end product of SRB activity and corrosion formation after treatment. Results have shown that the US irradiation treatment gives a synergistic effect when combined with UV radiation in mitigating the SRB consortium.
DOI: 10.6084/m9.figshare.4427438
title: FISH-546-1.0.tar.gz

description: This project documents work running an open source <em>de novo</em> peptide sequencing tool, Novor, and comparing it to peptide identification by traditional protein database searching.
DOI: 10.6084/m9.figshare.4427438.v1
title: FISH-546-1.0.tar.gz

description: This project documents work running an open source <em>de novo</em> peptide sequencing tool, Novor, and comparing it to peptide identification by traditional protein database searching.
DOI: 10.6084/m9.figshare.12907643.v1
title: R0195_20171005a_videos

description: Rat 0195, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12910100.v1
title: Supplemental File.zip

description: Response of the ileum transcriptome to probiotic and fructo-oligosaccharides in Taiping chicken
DOI: 10.6084/m9.figshare.12910100
title: Supplemental File.zip

description: Response of the ileum transcriptome to probiotic and fructo-oligosaccharides in Taiping chicken
DOI: 10.6084/m9.figshare.12899960.v3
title: Exenatide, metformin, or both for prediabetes in PCOS: A randomized, open-labeled, parallel-group controlled study

description: <b>supplemental table1 and table2</b>
DOI: 10.6084/m9.figshare.12910115
title: Supplementary File.zip

description: <b>Response of the ileum transcriptome to probiotic and fructo-oligosaccharides in Taiping chicken</b>
DOI: 10.6084/m9.figshare.12910115.v1
title: Supplementary File.zip

description: <b>Response of the ileum transcriptome to probiotic and fructo-oligosaccharides in Taiping chicken</b>
DOI: 10.6084/m9.figshare.12901370
title: Supplemental File.zip

description: <b>Response of the ileum transcriptome to Fructo-oligosaccharides in Taiping chicken</b>
DOI: 10.6084/m9.figshare.12901370.v3
title: Supplemental File.zip

description: <b>Response of the ileum transcriptome to Fructo-oligosaccharides in Taiping chicken</b>
DOI: 10.6084/m9.figshare.12901370.v2
title: Supplemental File.zip

description: <b>Response of the ileum transcriptome to Fructo-oligosaccharides in Taiping chicken</b>
DOI: 10.6084/m9.figshare.12910088
title: Data from Ectodysplasin A is increased in nonalcoholic fatty liver disease, but is not associated with type 2 diabetes.docx

description: <b>CONTEXT:</b> Ectodysplasin A (EDA) was recently identified as a liver-secreted protein that is increased in the liver and plasma of obese mice and causes skeletal muscle insulin resistance.<b>OBJECTIVE:</b> To determine if liver and plasma EDA is associated with worsening non-alcoholic fatty liver disease (NAFLD) in obese patients and to evaluate plasma EDA as a biomarker for NAFLD.<b>DESIGN AND SETTING:</b> Cross-sectional study in a public hospital.<b>PATIENTS, INTERVENTIONS AND MAIN OUTCOME MEASURES:</b> Patients with a body mass index &gt;30 kg/m<sup>2 </sup>(n=152) underwent liver biopsy for histopathology assessment and fasting liver EDA mRNA. Fasting plasma EDA levels were also assessed. Non-alcoholic fatty liver (NAFL) was defined as &gt;5% hepatic steatosis and nonalcoholic steatohepatitis (NASH) as NAFLD activity score ≥3.<b>RESULTS:</b> Patients were divided into three groups: No NAFLD (n=45); NAFL (n=65); and NASH (n=42). Liver <i>EDA</i> mRNA was increased in patients with NASH compared with No NAFLD (P=0.05), but not NAFL. Plasma EDA levels were increased in NAFL and NASH compared with No NAFLD (P=0.03). Plasma EDA was related to worsening steatosis (P=0.02) and fibrosis (P=0.04), but not inflammation or hepatocellular ballooning. ROC analysis indicates that plasma EDA is not a reliable biomarker for NAFL or NASH. Plasma EDA was not increased in patients with type 2 diabetes and did not correlate with insulin resistance.<b>CONCLUSIONS:</b> Plasma EDA is increased in NAFL and NASH, is related to worsening steatosis and fibrosis but is not a reliable biomarker for NASH. Circulating EDA is not associated with insulin resistance in human obesity.
DOI: 10.6084/m9.figshare.12910088.v2
title: Data from Ectodysplasin A is increased in nonalcoholic fatty liver disease, but is not associated with type 2 diabetes.docx

description: <b>CONTEXT:</b> Ectodysplasin A (EDA) was recently identified as a liver-secreted protein that is increased in the liver and plasma of obese mice and causes skeletal muscle insulin resistance.<b>OBJECTIVE:</b> To determine if liver and plasma EDA is associated with worsening non-alcoholic fatty liver disease (NAFLD) in obese patients and to evaluate plasma EDA as a biomarker for NAFLD.<b>DESIGN AND SETTING:</b> Cross-sectional study in a public hospital.<b>PATIENTS, INTERVENTIONS AND MAIN OUTCOME MEASURES:</b> Patients with a body mass index &gt;30 kg/m<sup>2 </sup>(n=152) underwent liver biopsy for histopathology assessment and fasting liver EDA mRNA. Fasting plasma EDA levels were also assessed. Non-alcoholic fatty liver (NAFL) was defined as &gt;5% hepatic steatosis and nonalcoholic steatohepatitis (NASH) as NAFLD activity score ≥3.<b>RESULTS:</b> Patients were divided into three groups: No NAFLD (n=45); NAFL (n=65); and NASH (n=42). Liver <i>EDA</i> mRNA was increased in patients with NASH compared with No NAFLD (P=0.05), but not NAFL. Plasma EDA levels were increased in NAFL and NASH compared with No NAFLD (P=0.03). Plasma EDA was related to worsening steatosis (P=0.02) and fibrosis (P=0.04), but not inflammation or hepatocellular ballooning. ROC analysis indicates that plasma EDA is not a reliable biomarker for NAFL or NASH. Plasma EDA was not increased in patients with type 2 diabetes and did not correlate with insulin resistance.<b>CONCLUSIONS:</b> Plasma EDA is increased in NAFL and NASH, is related to worsening steatosis and fibrosis but is not a reliable biomarker for NASH. Circulating EDA is not associated with insulin resistance in human obesity.
DOI: 10.6084/m9.figshare.12910088.v1
title: Data from Ectodysplasin A is increased in nonalcoholic fatty liver disease, but is not associated with type 2 diabetes.docx

description: <b>CONTEXT:</b> Ectodysplasin A (EDA) was recently identified as a liver-secreted protein that is increased in the liver and plasma of obese mice and causes skeletal muscle insulin resistance.<b>OBJECTIVE:</b> To determine if liver and plasma EDA is associated with worsening non-alcoholic fatty liver disease (NAFLD) in obese patients and to evaluate plasma EDA as a biomarker for NAFLD.<b>DESIGN AND SETTING:</b> Cross-sectional study in a public hospital.<b>PATIENTS, INTERVENTIONS AND MAIN OUTCOME MEASURES:</b> Patients with a body mass index &gt;30 kg/m<sup>2 </sup>(n=152) underwent liver biopsy for histopathology assessment and fasting liver EDA mRNA. Fasting plasma EDA levels were also assessed. Non-alcoholic fatty liver (NAFL) was defined as &gt;5% hepatic steatosis and nonalcoholic steatohepatitis (NASH) as NAFLD activity score ≥3.<b>RESULTS:</b> Patients were divided into three groups: No NAFLD (n=45); NAFL (n=65); and NASH (n=42). Liver <i>EDA</i> mRNA was increased in patients with NASH compared with No NAFLD (P=0.05), but not NAFL. Plasma EDA levels were increased in NAFL and NASH compared with No NAFLD (P=0.03). Plasma EDA was related to worsening steatosis (P=0.02) and fibrosis (P=0.04), but not inflammation or hepatocellular ballooning. ROC analysis indicates that plasma EDA is not a reliable biomarker for NAFL or NASH. Plasma EDA was not increased in patients with type 2 diabetes and did not correlate with insulin resistance.<b>CONCLUSIONS:</b> Plasma EDA is increased in NAFL and NASH, is related to worsening steatosis and fibrosis but is not a reliable biomarker for NASH. Circulating EDA is not associated with insulin resistance in human obesity.
DOI: 10.6084/m9.figshare.12525545
title: Submission for Journal Data _ Political.xlsx

description: This study was an quasi experimental design that examine if a person liberal or conservative ideology caused them to trust or have a desire to visit the destination depending on the type of ideological events that were held in a destination.<br>
DOI: 10.25817/5f5047e001412
title: XRD semi-quantitative supplementary data
DOI: 10.6084/m9.figshare.12909602
title: R0193_20171004a_videos

description: Rat 0193, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5281/zenodo.4012762
title: Plastic Packaging Market Estimates and Forecast, by Type, 2014 - 2025

description: Estimates of historical (2014-2018) and forecast (2019-2025) size of the global market for rigid and flexible plastic packaging.
description: Global aggregation of plastic packaging market data.
DOI: 10.5281/zenodo.4012769
title: Plastic Packaging Market Estimates and Forecast, by Type, 2014 - 2025

description: Estimates of historical (2014-2018) and forecast (2019-2025) size of the global market for rigid and flexible plastic packaging.
description: Global aggregation of plastic packaging market data.
DOI: 10.5281/zenodo.4012761
title: Plastic Packaging Market Estimates and Forecast, by Type, 2014 - 2025

description: Estimates of historical (2014-2018) and forecast (2019-2025) size of the global market for rigid and flexible plastic packaging.
description: Global aggregation of plastic packaging market data.
DOI: 10.6084/m9.figshare.12901175
title: The effects of sediments on supershear rupture

description: Data for figures<br>
DOI: 10.6084/m9.figshare.12901175.v1
title: The effects of sediments on supershear rupture

description: Data for figures<br>
DOI: 10.5519/qd.wvw7w1fb
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (6 records)
DOI: 10.5519/qd.uwopk5pl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.5519/qd.50yqetsh
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.12909602.v1
title: R0193_20171004a_videos

description: Rat 0193, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5519/qd.8o341w5m
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.pn0jqnxn
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (6 records)
DOI: 10.5519/qd.cmlwr8bx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.t12mikf8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.m9fb112q
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.s062q833
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.aeznns0z
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.yytapm89
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.lngs2uha
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.6084/m9.figshare.4398149.v2
title: Additional file 3 of Sperm competition risk drives plasticity in seminal fluid composition

description: Morphological data. Body mass, testes mass, seminal vesicles mass, daily sperm production rate and epididymal sperm numbers data for subject male house mice, classified according to experimental treatment group: high sperm competition risk, high potential mating rate (4m4f); low sperm competition risk, low potential mating rate (2m2f); high sperm competition risk, low potential mating rate (4m2f); low sperm competition risk, high potential mating rate (2m4f). (XLSX 45 kb)
DOI: 10.6084/m9.figshare.4398131.v2
title: Additional file 1 of Sperm competition risk drives plasticity in seminal fluid composition

description: A summary of the proteomics data analysis from Progenesis QI with abundances normalized using all 383 proteins. Progenesis QI html report file for the proteins identified and quantified across the four treatment groups. At the top of the file is a summary table of the protein-level average normalised abundances, ranked according to Mascot protein database search score. This is followed by peptide-level abundances, in tabular form, for each protein, on a protein-byprotein basis. Data are split by treatment groups according to high or low sperm competition risk. At the bottom of the report file are plots summarizing the between treatment group abundance data, at protein level. Those proteins ‘tagged’ with a red or green circle are those that were significantly changing in abundance between the treatment groups, according to ANOVA tests at p &lt; 0.05 or p &lt; 0.01 (respectively). Also included are the Top3 protein abundances, normalised to all proteins, in a .csv file. (ZIP 4169 kb)