cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0kp812z
title: CIL:36223, Tetrahymena pyriformis, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film; Print from negative scanned for Photoshop.
Data qualification: Processed
description: The nascent digestive vacuole forms as the membrane of flattened vesicles fuse with the single membrane of the cytopharynx between the lamellae (2 microtubules forming a lamella) that are connected along their length to the membrane at the cytopharynx. Another portion of the forming vacuole is associated with the ends of the 4 element- (4 mt) and 2 element- (2 mt) microtubular ribbons that come from the oral ribs. These ribbons are covered with specialized cytoplasm and do not take part in moving discoidal vesicles to the vesicle fusion region. One feature of the nascent vacuole in Tetrahymena that has not been observed in Paramecium is the presence of coated pits extending from the vacuole membrane. Finally, vesicles previously called lysosomes, which to me resemble the late endosomes, acidosomes, of Paramecium, dock at the growing vacuole. For a review of the literature of phagocytosis in Tetrahymena see Nilsson, Biochemistry and Physiology of Protozoa, 2nd ed., Academic Press, pp. 339-379, 1979; Sattler and Staehelin, J. Ultrastructure Res. 66:132-150, 1979; and Baumert et al., Eur. J. Protistol. 34:291-300, 1998. TEM taken on 8/15/67 by R. Allen with Philips 200 operating at 60kV. Neg 19,200X. Bar = 0.5µm. The negative was printed to paper and the image was scanned to Photoshop. This digitized image is available for qualitative analysis. There is a high resolution version of this image in the library (CIL:39720) which is available for quantitative analysis. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
DOI: 10.6075/j0125rpd
title: CIL:2639, Caenorhabditis elegans. In Cell Image Library

description: The purpose of the dataset C. elegans terminal bulb aging is to deduce the age of the nemathode based on images of the pharynx terminal bulb (part of the eating apparatus). Images of C. elegans were taken at different chronological ages. This image is part of the day 12 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: Terminal Bulb is a dataset of DIC (differential interference contrast) 20x microscopy images of the pharynx terminal bulb of C. elegans at different ages (0, 2, 4, 6, 8, 10, 12 days). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1587, 1694, 1905, 2213, 2622, 2544, and 2606, respectively.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
DOI: 10.6075/j0th8kkr
title: CIL:36244, Tetrahymena pyriformis, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: The basal bodies in the opisthe developing oral apparatus become organized into polykinetids of the three oral membranelles (1, 2 and 3) and of the two rows of basal bodies forming the undulating membrane. The outer row of basal bodies of the undulating membrane is already ciliated as are at least some of the polykinetids of the oral membranelles. Somatic cilia/basal body complexes composed of monokinetids are also present. TEM taken on 8/14/67 by R. Allen with Philips 200 operating at 60kV. Neg. 9,000X. Bar = 0.5µm. The negative was printed to paper and the image was scanned to Photoshop. This digitized image is available for qualitative analysis. There is a high resolution version of this image in the library (CIL:39518) which is available for quantitative analysis. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film; Print from negative scanned for Photoshop.
Data qualification: Processed
DOI: 10.6075/j01v5cj0
title: CIL:47575, Staphylococcus aureus, neutrophil, endothelial cell. In Cell Image Library

description: Visualization of neutrophil recruitment in capillaries proximal to agarose beads. (Figure 3 - Mac1)
description: Mice were anesthetized with ketamine/xylazine, and then subcutaneous tissue on a dorsal flap was exteriorized. GFP staphylococcus aureus beads were inserted. Antibodies were injected into the vasculature to label neutrophils (red) and endothelial cells (blue). Blocking antibodies against the molecule Mac1 were administered after 2 hours of infection.
description: Relation to intact cell: intact cells-in vivo imaging
Item type: recorded image
Imaging mode: spinning disk confocal microscopy
Source of contrast: antibody labelling
Processing history: Converted from volocity to .avi
DOI: 10.6075/j01c1vf3
title: CIL:49152, Homo sapiens. In Cell Image Library

description: Gustafsdottir et al. (doi:10.1371/journal.pone.0080999) have developed a multiplex cytological profiling assay that "paints the cell" with as many fluorescent markers as possible without compromising our ability to extract rich, quantitative profiles in high throughput. The assay detects seven major cellular components. In a pilot screen of bioactive compounds, the assay detected a range of cellular phenotypes and it clustered compounds with similar annotated protein targets or chemical structure based on cytological profiles. The results demonstrate that the assay captures subtle patterns in the combination of morphological labels, thereby detecting the effects of chemical compounds even though their targets are not stained directly. This image-based assay provides an unbiased approach to characterize compound- and disease-associated cell states to support future probe discovery. Using the cell-painting assay, the Broad Institute has assembled a reference dataset of profiles for U2OS osteosarcoma cells treated with ~30,000 compounds. The compound collection includes DOS-derived compounds (20,000), as well as chemically diverse MLI compounds with biologically diverse performance identified through analysis of PubChem (10,000), and known bioactive compounds to serve as landmarks (2,500). The DOS compounds consist of structurally diverse and stereochemically rich compounds with structures distinct from the current MLSMR. The compound collection also includes 267 distinct compounds nominated by MLPCN Centers from projects for which the Centers would like to identify new chemical series with similar activities. The experiment consists of 375 microtiter plates. Each plate has 384 wells. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.

The experiment consists of 375 microtiter plates. Each plate has 384 wells. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.
description: Plate 24666 - Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This image set provides a basis for testing image-based profiling methods wrt. to their ability to distinguish the effects of small molecules. The images are of U2OS cells treated with each of 1600 known bioactive compounds and labeled with six labels that characterize seven organelles (the cell-painting assay). This experiment consists of 375 plates in 384-well format, for a data set comprised of 988,994 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale image file, so there are approximately 5 million image files in 16-bit TIFF format.
DOI: 10.6075/j0pc3100
title: CIL:37330, epidermal cell. In Cell Image Library

description: This video shows an epidermal cell loaded with a florescent lipid diOC-6. diOC-6 is a vital stain for the endoplasmic reticulum and mitochondria. In this sequence one sees the extension of ER tubules along microtubules into the middle part of the lamellipodium. These extensions of endoplasmic reticulum appear to be pushed back towards the cell body by the retrograde flows of actin in lamellipodia. Video made available by Mark Cooper thru Zebrafish - The Living Laboratory.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions; DiOC6 (3,3'-dihexyloxacarbocyanine iodide)
Processing history: unprocessed raw data
Data qualification: Raw
DOI: 10.6075/j0zw1k66
title: CIL:1070, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 2 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
DOI: 10.15468/dl.ux49wh
title: Occurrence Download

description: A dataset containing 1205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Araucaria araucana (Molina) K.Koch"
 ]
}

 The dataset includes 1205 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006942-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc530bl
title: CCDC 151848: Experimental Crystal Structure Determination

description: Related Article: A.C.Hillier, H.Jacobsen, D.Gusev, H.W.Schmalle, H.Berke|2001|Inorg.Chem.|40|6334|doi:10.1021/ic010477r
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4yqqh
title: CCDC 147737: Experimental Crystal Structure Determination

description: Related Article: Jun Tao, Jian-Xin Shi, Ming-Liang Tong, Xiao-Xia Zhang, Xiao-Ming Chen|2001|Inorg.Chem.|40|6328|doi:10.1021/ic010472u
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc55nhg
title: CCDC 154395: Experimental Crystal Structure Determination

description: Related Article: Hui-Zhong Kou, Song Gao, Ou Bai, Zhe-Ming Wang|2001|Inorg.Chem.|40|6287|doi:10.1021/ic010282j
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc55njh
title: CCDC 154396: Experimental Crystal Structure Determination

description: Related Article: Hui-Zhong Kou, Song Gao, Ou Bai, Zhe-Ming Wang|2001|Inorg.Chem.|40|6287|doi:10.1021/ic010282j
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc55nkj
title: CCDC 154397: Experimental Crystal Structure Determination

description: Related Article: Hui-Zhong Kou, Song Gao, Ou Bai, Zhe-Ming Wang|2001|Inorg.Chem.|40|6287|doi:10.1021/ic010282j
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xhsb
title: CCDC 176352: Experimental Crystal Structure Determination

description: Related Article: W.J.Evans, B.L.Davis, J.W.Ziller|2001|Inorg.Chem.|40|6341|doi:10.1021/ic010554i
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xhtc
title: CCDC 176353: Experimental Crystal Structure Determination

description: Related Article: W.J.Evans, B.L.Davis, J.W.Ziller|2001|Inorg.Chem.|40|6341|doi:10.1021/ic010554i
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xhvd
title: CCDC 176354: Experimental Crystal Structure Determination

description: Related Article: W.J.Evans, B.L.Davis, J.W.Ziller|2001|Inorg.Chem.|40|6341|doi:10.1021/ic010554i
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xhwf
title: CCDC 176355: Experimental Crystal Structure Determination

description: Related Article: W.J.Evans, B.L.Davis, J.W.Ziller|2001|Inorg.Chem.|40|6341|doi:10.1021/ic010554i
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xhxg
title: CCDC 176356: Experimental Crystal Structure Determination

description: Related Article: A.R.Sadique, M.J.Heeg, C.H.Winter|2001|Inorg.Chem.|40|6349|doi:10.1021/ic0106928
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xhyh
title: CCDC 176357: Experimental Crystal Structure Determination

description: Related Article: A.R.Sadique, M.J.Heeg, C.H.Winter|2001|Inorg.Chem.|40|6349|doi:10.1021/ic0106928
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xhzj
title: CCDC 176358: Experimental Crystal Structure Determination

description: Related Article: A.R.Sadique, M.J.Heeg, C.H.Winter|2001|Inorg.Chem.|40|6349|doi:10.1021/ic0106928
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xj0l
title: CCDC 176359: Experimental Crystal Structure Determination

description: Related Article: P.Arranz, C.Bazzicalupi, A.Bencini, A.Bianchi, S.Ciattini, P.Fornasari, C.Giorgi, B.Valtancoli|2001|Inorg.Chem.|40|6383|doi:10.1021/ic010597z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xj1m
title: CCDC 176360: Experimental Crystal Structure Determination

description: Related Article: P.Arranz, C.Bazzicalupi, A.Bencini, A.Bianchi, S.Ciattini, P.Fornasari, C.Giorgi, B.Valtancoli|2001|Inorg.Chem.|40|6383|doi:10.1021/ic010597z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xj2n
title: CCDC 176361: Experimental Crystal Structure Determination

description: Related Article: M.Sanchez, H.Hopfl, M.-E.Ochoa, N.Farfan, R.Santillan, S.Rojas|2001|Inorg.Chem.|40|6405|doi:10.1021/ic010580g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xj3p
title: CCDC 176362: Experimental Crystal Structure Determination

description: Related Article: M.Sanchez, H.Hopfl, M.-E.Ochoa, N.Farfan, R.Santillan, S.Rojas|2001|Inorg.Chem.|40|6405|doi:10.1021/ic010580g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xj4q
title: CCDC 176363: Experimental Crystal Structure Determination

description: Related Article: M.Sanchez, H.Hopfl, M.-E.Ochoa, N.Farfan, R.Santillan, S.Rojas|2001|Inorg.Chem.|40|6405|doi:10.1021/ic010580g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xj5r
title: CCDC 176364: Experimental Crystal Structure Determination

description: Related Article: M.Sanchez, H.Hopfl, M.-E.Ochoa, N.Farfan, R.Santillan, S.Rojas|2001|Inorg.Chem.|40|6405|doi:10.1021/ic010580g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xj6s
title: CCDC 176365: Experimental Crystal Structure Determination

description: Related Article: M.Sanchez, H.Hopfl, M.-E.Ochoa, N.Farfan, R.Santillan, S.Rojas|2001|Inorg.Chem.|40|6405|doi:10.1021/ic010580g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5xj8v
title: CCDC 176367: Experimental Crystal Structure Determination

description: Related Article: Yen-Hsiang Liu, Hui-Lien Tsai, Yi-Long Lu, Yuh-Sheng Wen, Ju-Chun Wang, Kuang-Lieh Lu|2001|Inorg.Chem.|40|6426|doi:10.1021/ic010528k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.