cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7116824.v1
title: Disruption of the RNA exosome reveals the hidden face of the malaria parasite transcriptome

description: Antisense transcription emerges as a key regulator of important biological processes in the human malaria parasite <i>Plasmodium falciparum</i>. RNA-processing factors, however, remain poorly characterized in this pathogen. Here, we purified the multiprotein RNA exosome complex of malaria parasites by affinity chromatography, using HA-tagged PfRrp4 and PfDis3 as the ligands. Seven distinct core exosome subunits (PfRrp41, PfMtr3, PfRrp42, PfRrp45, PfRrp4, PfRrp40, PfCsl4) and two exoribonuclease proteins PfRrp6 and PfDis3 are identified by mass spectrometry. Western blot analysis detects Dis3 and Rrp4 predominantly in the cytoplasmic fraction during asexual blood stage development. An inducible gene knock out of the PfDis3 subunit reveals the upregulation of structural and coding RNA, but the vast majority belongs to antisense RNA. Furthermore, we detect numerous types of cryptic unstable transcripts (CUTs) linked to virulence gene families including antisense RNA in the <i>rif</i> gene family. Our work highlights the limitations of steady-state RNA analysis to predict transcriptional activity and link the RNA surveillance machinery directly with post-transcriptional control and gene expression in malaria parasites.
DOI: 10.6084/m9.figshare.13289165.v1
title: COLL Dataset v1.2

description: Training, validation and test sets for the COLL v1.2 dataset.<br>
DOI: 10.6084/m9.figshare.27956919.v1
title: PLADA Database

description: A human movement experiment was conducted with 4 young adults who performed 3 walking tests at a constant speed of 2 mph. PLADA-instrumented templates are used to record the plantar load of the lower extremities during walking, synchronized with the motion capture system that records the angular trajectories of the lower extremity joints.In this shared data repository, the kinematic and kinetic synchronized data is provided considering the local time of acquisition. In addition, the processed data are provided considering step segmentation and normalization by percentage of the gait cycle.Description of the data set structure:Data.Info: general information of the participant.Data.TrialX:Left: Data recorded in the left template.Right: Data recorded in the right template.KinematicLeft: Recorded data of left articulation angles.KinematicRight: angle data.Step:KineticLeft: the pressure at 24 FSR and GRF normalizes by the gait cycle .KineticRight: pressure to 24 FSR and GRF normalize by gait cycle.KinematicLeft: The angles of the joints are normalized by the gait cycle.KinematicRight: The angles of the joints are normalized by the walking cycle.<br>
DOI: 10.6084/m9.figshare.14974911.v1
title: Supplementary Material for: Deconvolution of FSGS pathophysiology using transcriptomics techniques

description: Medicine
DOI: 10.6084/m9.figshare.8132453.v1
title: AIBS_2016_GrantPeerReviewer_Survey_Anonymized

description: This data set is from a 2016 AIBS (American Institute of Biological Sciences) survey of biomedical grant reviewers and applicants and their perceptions of the review process. There were multiple areas of focus, including applicant perceptions of review feedback, and reviewer perceptions of the review process, as well as their levels of participation, motivations and preferences. The survey was reviewed by the Washington State University Office of Research Assurances (Assurance#FWA00002946) and granted an exemption from IRB review (IRB#15268; 45 CFR 46.101(b)(2)). As mentioned in previous publications, the survey was sent out in September of 2016 to 13,091 individual scientists from AIBS’s database through the use of Limesurvey, which de-identified the responses. All individuals participating in this survey were either reviewers for AIBS (36%) or had submitted an application as a PI which was reviewed by AIBS (71%) or both (12%). Respondents were asked to answer questions based on their most recent peer review/grant submission. The reported reviews did not have to be AIBS reviews (it is likely that the majority of reviews reported here were not for AIBS). The survey was open for two months. The original survey contained 60 questions and was divided into 5 subsections. Several publications have resulted from analysis of this data: https://link.springer.com/article/10.1007/s10669-018-9677-6. The questions examined had either Yes/No or Likert interval rating scale response choices. Included in the data set are individual respondent answers as well as the full original questions in the first row. It should be noted, for most questions respondents were also given the choice to select “no answer/prefer not to answer.” (sometimes represented as the number 6 or by N/A). In some instances, answers were not required, so some are blank. Please see publications for more details.<br><br>
DOI: 10.17632/9smdtm4msj
title: Structure of the human inner kinetochore CCAN complex and its significance for human centromere organization

description: Centromeres are specialized chromosome loci that seed the kinetochore, a large protein complex that effects chromosome segregation. A 16-subunit complex, the constitutive centromere associated network (CCAN), establishes an interface between the specialized centromeric chromatin, marked by the histone H3 variant CENP-A, and the spindle-binding moiety of the kinetochore. Here, we report a cryo-electron microscopy structure of human CCAN. We highlight unique features such as the pseudo GTPase CENP-M and report how a crucial CENP-C motif binds the CENP-LN complex. The CCAN structure has implications for the mechanism of specific recognition of the CENP-A nucleosome. A model consistent with our structure depicts the CENP-C bound nucleosome as connected to the CCAN through extended, flexible regions of CENP-C. An alternative model identifies both CENP-C and CENP-N as specificity determinants but requires CENP-N to bind CENP-A in a mode distinct from the classical nucleosome octamer.
DOI: 10.25383/city.6115676.v1
title: Fictional First Memories

description: The data are variables for people's fictional first memories. <br>In the present
study we conducted the first large-scale web-based survey of <i>first</i> memories (rather than the more
general category of early memories Thus, the key variable in the present study was respondents’
estimates of their age when their first memory was formed: age at encoding
(AaE)[1]. Moreover,
because this was a large-scale study we were able to sample across the full age
range and draw on the general population. Uniquely, the survey was linked to a
popular series of radio programs on memory produced and broadcast by the
British Broadcasting Corporation (BBC) Radio 4 in the United Kingdom (2007). 







 The fourth author
introduced the idea that the program would conduct a memory survey of various
type of memories (earliest, self-defining, and flashbulb memories) and report
the results of the survey in a later program. The audience were invited to log
into a memory web site hosted by the BBC that contained various sources of
information about memory and separate questionnaires for each of the three
types of memories-to-be sampled. The questionnaires always began with an
information page outlining key instructions regarding the nature of the to-be-sampled
memory, an informed consent box to be checked, and minimal demographic data was
collected (age, gender, county of residence in the UK and years in education,
see Supplemental Materials).  Respondents
were also informed that after recalling their earliest memory they would be
asked to answer some questions about the memory. For these questions they were
instructed not to guess or infer answers but to only answer if they actually
remembered the answer. 

 

Respondents then
moved to the next page of the questionnaire proper. They were instructed to
recall and then type a title and description (in the box provided) of their
very earliest memory. The title was to be only a few words in length but of sufficient
specificity that if they read it again it would remind them of the memory they
had recalled .
The memory description was to be about a paragraph or so in lengthThe memory itself had to be one that they were certain they
remembered. It should not be based on, for example a family photograph, family
story, or any source other than direct experience. The memory had to be for a
specific one-off event that lasted no longer than minutes/hours. It was
specifically emphasised that the memory should not be of a routine or repeated
event. After entering the title and memory description respondents were then asked
to enter, in years, the age they believed they were in the memory. Following
this, the respondents answered a series of questions regarding the recollective
qualities of the memory (see Supplemental Materials for details). 



<br>





<br><br><br>
DOI: 10.21942/uva.9933266.v1
title: Content Analysis: The Credibility Gap in CSR Reporting

description: Dataset and codebook of the content analysis study published in the Journal of Cleaner Production:https://doi.org/10.1016/j.jclepro.2016.02.060<br><br>Complete codebook in Word format;Dataset as excel file including the computed credibility scores
DOI: 10.6084/m9.figshare.23375165.v1
title: The genetic relationship between coeval Ediacaran mafic and granitoid plutons in the Antigonish Highlands, Nova Scotia

description: S2: Sm–Nd isotopic data
DOI: 10.6084/m9.figshare.693758.v1
title: Krótkoterminowe planowanie finansowe

description: Zarządzanie należnościami, preliminarz środków pieniężnych
DOI: 10.5522/04/9996158.v1
title: EPISURG: a dataset of postoperative magnetic resonance images (MRI) for quantitative analysis of resection neurosurgery for refractory epilepsy

description: EPISURG is a clinical dataset of T<sub>1</sub>-weighted magnetic resonance images (MRI) from 430 epileptic patients who underwent resective brain surgery at the National Hospital of Neurology and Neurosurgery (Queen Square, London, United Kingdom) between 1990 and 2018.<br><br>The NIfTI files are anonymised and the images have been defaced to further protect the patients' identity.<br>The dataset comprises 430 postoperative MRI. The corresponding preoperative MRI is present for 269 subjects.<br>Three human raters segmented the resection cavity on partially overlapping subsets of EPISURG:<br>- Rater 1: 133 subjects (researcher in neuroimaging)- Rater 2: 34 subjects (clinical scientist)- Rater 3: 33 subjects (neurologist)<br><br><b>Acknowledgements</b><br>If you use this dataset for your research please cite the following publications:<br><i>Pérez-García F., Rodionov R., Alim-Marvasti A., Sparks R., Duncan J.S., Ourselin S. (2020) Simulation of Brain Resection for Cavity Segmentation Using Self-supervised and Semi-supervised Learning. In: Martel A.L. et al. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. Lecture Notes in Computer Science, vol 12263. Springer, Cham. https://doi.org/10.1007/978-3-030-59716-0_12</i><br><i>Pérez-García F., Rodionov R., Alim-Marvasti A., Sparks R., Duncan J.S., Ourselin S. EPISURG: MRI dataset for quantitative analysis of resective neurosurgery for refractory epilepsy. University College London (2020). DOI 10.5522/04/9996158.v1</i><br><br><b>Graphical user interface (GUI)</b><br><b><br></b>The 3D Slicer extension EPISURG may be used to visualise the dataset: https://github.com/fepegar/SlicerEPISURG<br><br><b>Data use agreement</b><br>The EPISURG data are distributed to the greater scientific community under the following terms:<br>1. You will not attempt to establish the identity or to make contact with any of the included subjects.2. You will acknowledge the use of EPISURG data and data derived from EPISURG data when publicly presenting any results or algorithms that benefitted from their use. Papers, book chapters, books, posters, oral presentations, and all other printed and digital presentations of results derived from EPISURG data should cite the publications listed above.3. You will not further disclose these data beyond the uses outlined in this agreement and understand that redistribution of data in any manner is prohibited.4. You will require anyone on your team who uses these data, or anyone with whom you share these data to comply with this data use agreement.<br>
DOI: 10.6084/m9.figshare.5463484.v1
title: BARM annotations

description: Functional and taxonomic annotations of the sequences published with the Baltic Sea reference Metagenome. Details of how the annotations are made are available in the publication.
DOI: 10.6084/m9.figshare.19682808.v1
title: Supplementary Material for: Acute Cerebral Microinfarcts in Acute Ischemic Stroke: Imaging and Clinical Significance

description: <b><i>Background:</i></b> Limited data exist on the significance of acute cerebral microinfarcts (A-CMIs) in the context of acute ischemic stroke (AIS). We aimed to determine the profile and prognostic significance of A-CMIs on magnetic resonance imaging (MRI) in patients presenting with AIS. <b><i>Methods:</i></b> A prospective single-center series of patients with AIS who had 3T MRIs between March 2013 and December 2019. The presence, number, and location of A-CMIs on diffusion-weighted imaging, and markers of cerebral small vessel disease (CSVD), macroinfarcts features, and etiology were classified as cardioembolism (CE) or large artery atherosclerosis (LAA) or none. <b><i>Results:</i></b> Among 273 patients, A-CMIs were detected in 130 patients (47.6%), of whom cortical A-CMIs were found in 95 (73.0%) patients. Patients with A-CMIs were significantly older, less likely to have diabetes mellitus, and more likely to have atrial fibrillation and an embolic source (CE or LAA) compared to other patients. Patients with A-CMI had a higher frequency of macroinfarcts (diameter &gt;20 mm), more often multiple and distributed in single or multiple vessel territories than other patients. An embolic source (LAA or CE) was independently associated with cortical A-CMIs (LAA adjusted odds ratio [aOR] 4.0 95% confidence interval [CI] 1.6–9.5; CE aOR 2.5, 95% CI 1.1–5.6), whereas lacunes were independently related to subcortical A-CMIs (aOR 2.6, 95% CI 1.2–5.8). <b><i>Conclusions:</i></b> We have shown A-CMIs occur in cortical and subcortical regions in nearly half of AIS patients, where microembolism and CSVD are, respectively, the key presumed etiological mechanism.
DOI: 10.6084/m9.figshare.26395141.v2
title: <b>Evaluating Flow Cytometric Analysis Techniques for Microbial Monitoring in Drinking Water Treatment</b>

description: Flow cytometry (FCM) offers a rapid method for bacterial detection in drinking water but faces challenges in terms of data analysis, particularly gating subjectivity. This study evaluates three metrics derived from the Intact Cell Count (ICC): High/Low Nucleic Acid (HNA/LNA) ratios, Bray–Curtis Dissimilarity Index (BCDI), and FCM fingerprints—to enhance microbial monitoring approaches across different water treatment and distribution stages. ICC provided a direct assessment of microbial load in high cell count scenarios, while HNA/LNA ratios were valuable during low microbial levels. BCDI effectively tracked microbial population changes throughout treatment processes. A lead–lag analysis revealed that ICC changes often precede or coincide with BCDI changes and lead changes in HNA/LNA ratios. FCM fingerprinting visualized spatial and temporal variations in microbial communities. Combining these FCM metrics improved microbial water quality assessment and supports approaches to optimise water treatment strategies from a microbial perspective.
DOI: 10.6084/m9.figshare.28356203.v1
title: Spatio-Temporal Geographic Networks for Value Co-Creation and Technology Transfer in china with Patent Data

description: Spatio-Temporal Geographic Networks for Value Co-Creation and Technology Transfer in china with Patent Data
DOI: 10.6084/m9.figshare.12999815.v2
title: 100d fasttext (skipgram) embeddings for Cyrillic Uzbek using webcrawl v1 corpus

description: 100-dimensional fasttext skipgram word embeddings for the Cyrillic Uzbek language. Trained using the webcrawl corpus v1.
DOI: 10.6084/m9.figshare.27211989.v1
title: Motivations, Challenges, Best Practices, and Benefits for Bots and Conversational Agents in Software Engineering—Online Appendix

description: This is the online appendix for the paper titled “Motivations, Challenges, Best Practices, and Benefits for Bots and Conversational Agents in Software Engineering”. It contains all the material and procedures for the replicability and reliability of the Multivocal Literature Review described in the paper.
DOI: 10.6084/m9.figshare.27201789.v1
title: Post-fire forest data_Kalkanlı.xlsx

description: Post-fire data of pine forest in Kalkanlı region, Cyprus
DOI: 10.6084/m9.figshare.9599237.v1
title: Evaluation of the Lipid Quality of Lyophilized Pasteurized Human Milk for Six Months by GC-FID and ESI-MS

description: Human milk (HM) lipids provide about 50% energy and facilitate the transport and absorption of fat-soluble vitamins for infants, but their composition should be studied when the milk is processed. This study evaluated the lipid quality of lyophilized and vacuum-packed colostrum (C), transitional (T), and mature (M) HM for a period of 1, 30, 60, 90, 120, 150, and 180 days of storage at –18 ºC. From the acidity (ºDornic), lipid content, and fatty acid (FA) composition results, no significant differences in the analyzed period were observed. The relative percentage of major triacylglycerols (TAG) of the HM was not altered, showing that the lyophilization process in HM is a good alternative that could be applied in human milk banks (HMB), increasing HM preservation and facilitating its transport and storage.
DOI: 10.15468/dl.a4sz3n
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 -7.1504,26.9648 -7.1504,26.9648 -16.1504,35.9648 -16.1504,35.9648 -7.1504))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013457-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.1111590.v1
title: Coherence

description: This fileset contains a subset of the data used to compute linear coherence reported in the manuscript titled: "Functional connectivity in the first year of life in infants at risk for autism spectrum disorder: An EEG study" authored by Giulia Righi, Adrienne Tierney, Helen Tager-Flusberg & Charles Nelson
DOI: 10.6084/m9.figshare.28281110.v1
title: Singh et al., Front Virol 2025, MS data

description: The novel HIV-1 drugs GS-CA1 and the recently approved lenacapavir (GS-6207) target the viral structural protein capsid (CA). However, their multiple mechanisms of action have not been fully characterized. Here, we investigated the effects of GS-CA1 on the early stages of HIV-1 infection, specifically the steps involving the nuclear envelope, in comparison to the antiviral cytokine IFN-β. Mass spectrometry data indicated that nuclear envelope proteins were only modestly affected by either GS-CA1 treatment or HIV-1 infection, but combining the two had a more significant impact, altering the levels of many proteins including proteasomal components. GS-CA1 induced a small but clear accumulation of HIV-1 capsid cores at nuclear pores, as seen by microscopy, whereas IFN-β caused a strong accumulation of HIV-1 cores at the nuclear envelope but not specifically at nuclear pores. These observations are consistent with GS-CA1 inhibiting the nuclear translocation of HIV-1 capsid cores through nuclear pores.
DOI: 10.6084/m9.figshare.28720337.v1
title: Data and code from "Phase transitions and dimensional cross-over in layered confined solids"

description: <pre>This file contains the data and software used in the paper "Phase Transitions and Dimensional Cross-Over in Layered Confined Solids," published in [Proceedings of the National Academy of Sciences of the United States of America (PNAS)]. It includes the training dataset for constructing machine learning models, the source code of GPUMD with the implemented confinement potential for performing molecular dynamics simulations, and the MAGUS package used to predict confined crystal phases.<br></pre>
DOI: 10.6084/m9.figshare.14399522.v6
title: Analysis of the Seasonal and Interannual Variations of Air-Sea CO2 Flux in the Chukchi Sea Using A Coupled Ocean-Sea Ice-Biogeochemical Model

description: This data set is used in the paper 'Analysis of the Seasonal and Interannual Variations of Air-Sea CO<sub>2</sub> Flux in the Chukchi Sea Using A Coupled Ocean-Sea Ice-Biogeochemical Model'.<br>
DOI: 10.6084/m9.figshare.27183396.v1
title: Data supporting figures for the manuscript : <b>Interaction of Uteroplacental Insufficiency and Postnatal Western Diet on the Hepatic Transcriptome in Young Adult Female and Male Guinea Pigs</b>.xlsx

description: This study used a non-targeted transcriptomic analysis combined with miRNA-gene interaction prediction analysis, and subsequent chromatin immunoprecipitation assay and RT-PCR validation, and explored the hypothesis that gene expression pathways will be dysregulated in the liver of low birth weight (LBW) offspring, distinct from normal birth weight (NBW) offspring, in young adulthood when both birth weight outcomes are challenged with a lifelong postnatal western diet WD.
DOI: 10.15468/dl.2nr6gv
title: Occurrence Download

description: A dataset containing 2407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vitex trifolia L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2407 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013456-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.