cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5951959.v1
title: Supplementary Material for: Acceptance of Adjuvant and Neoadjuvant Chemotherapy in Muscle-Invasive Bladder Cancer in Germany: A Survey of Current Practice

description: <b><i>Background:</i></b> Guidelines support the use of neoadjuvant (NAC) and adjuvant (AC) chemotherapy in muscle-invasive bladder cancer. However, data from North America reported the underutilization of NAC in favor of AC despite the lower level of scientific evidence supporting AC. We aimed to assess current practice patterns of NAC and AC in ­Germany. <b><i>Methods:</i></b> A 15-question online survey was developed and sent via email newsletters to members of the ­German Association of Urology and of the German Society of Residents in Urology in October 2016 to analyze current practice patterns. <b><i>Results:</i></b> The survey yielded 141 individual responses from 61 different German urology departments. Eighty-nine (69.0%) and 119 (93.0%) participants were stated to regularly use NAC and AC respectively. The number of participants who were stated to use NAC and AC regularly was not associated with the type of institution (academic vs. nonacademic), number of hospital beds, and number of cystectomies performed annually. Gemcitabine/cisplatin combination chemotherapy was named as the primarily used NAC regimen by 80 (95%) respondents. The median number of administered cycles was 3 for NAC and 4 for AC. In the case of cisplatin ineligibility, combination chemotherapy with gemcitabine/carboplatin was the most common regimen. Respondents stated that chemotherapy was generally administered by urologists (81% for NAC and 85% for AC). <b><i>Conclusions:</i></b> Our survey of current practice shows a high acceptance rate of NAC in Germany, which was independent of the type of institution. Although the scientific level of evidence for AC is lower, it still seems to be more widely accepted than NAC. NAC and AC were generally administered by urologists.
DOI: 10.6084/m9.figshare.5644489.v1
title: Multimorbidity associated with polypharmacy and negative self-perception of health

description: Abstract Objective: to verify the association between the multimorbidity of the elderly and sociodemographic variables, self-perception of health and polypharmacy. Method: a cross-sectional study was performed. The research data was collected using the Health, Well-Being and Aging questionnaire. The sample was composed of 676 people aged 60 years or more, who were residents of small towns in the north of the state of Rio Grande do Sul, Brazil. The dependent variable was multimorbidity, that is, the occurrence of two or more chronic non-communicable diseases in the same person. The independent variables were demographic, socioeconomic and health-related characteristics. Poisson’s raw and robust regression model was used to analyze the effect of the independent variables in relation to the outcome and p was considered significant when &lt;0.05. Result: among the elderly interviewed, 45% presented multimorbidity, 51.1% reported a self-perception of poor/very poor health and 37.1% used polypharmacy. After the analysis was adjusted to the occurrence of multimorbidity, association with the following variables was found: health perception (regular/poor/very poor) PR=1.15 (CI95%; 1.09 - 1.22) and use of polypharmacy PR=1.29 (CI95%; 1.22 - 1.35). Conclusion: Multimorbidity may interfere negatively in the self-perception of health of the elderly contributing to increased medicine consumption.
DOI: 10.17632/28ks32hwxh
title: Myotube Baf60c controls muscle regeneration via Dkk3-mediated paracrine signaling in mice and humans

description: In this study, we reveal that Baf60c in mature skeletal myocytes modulates muscle stem cell function and regeneration through Dkk3-mediated paracrine signaling. Using mouse models with muscle specific knockout or transgenic expression of Baf60c, we uncovered an unexpected role of Baf60c in mature skeletal myocytes in governing muscle stem cell reparative function and regeneration capacity through production and secretion of myokines. Moreover, we identity Dkk3 as the downstream target of Baf60c in mature myocytes, contributing to deterioration of muscle regeneration capacity and progressive decline in functional muscle mass in obesity and type 2 diabetes. These datasets contain processed RNA-Seq, ATAC-Seq and Microarray data in skeletal muscles from Baf60c f/f mice and BcMKO mice (generated by crossing Baf60c f/f mice with MLC Cre mice). Details in the sample collection and data analysis pipeline can be found in the Method section of the manuscript. 

RNA-Seq:
 BcMKO_RNAseq.csv: RNA-Seq data from the tibialis anterior muscles of Baf60c f/f and Baf60c f/f MLC Cre mice following injection with either PBS or CTX for 3 days (referred as CTR_PBS, CTR_CTX, CKO_PBS and CKO_CTX, respectively), in 3 biological replicates. 
ATAC-Seq:
 Baf60c_f/f.bw, Baf60c_f/f_MLC_Cre.bw: BigWig files of ATAC-Seq from the quadriceps muscles of Baf60c f/f and Baf60c f/f MLC Cre mice, in 6 biological replicates. 
Microarray:
 BcMKO_Microarray.csv: Microarray data from the quadriceps muscles of Baf60c f/f and Baf60c f/f MLC Cre mice, in 3 biological replicates.
DOI: 10.6084/m9.figshare.14671986.v1
title: asd2017

description: GWAS summary statistics from the Psychiatric Genomics Consortium (PGC)
DOI: 10.6084/m9.figshare.21724349.v1
title: Supplementary Material for: Biochemical and Lung Function Test Accuracy for Predicting the Need for Surfactant Therapy in Preterm Infants: A Systematic Review

description: <b><i>Introduction:</i></b> We evaluate the accuracy of postnatal biochemical and lung function tests performed within 3 h from birth for predicting surfactant need in preterm infants ≤34 weeks’ gestation receiving noninvasive respiratory support for respiratory distress syndrome (RDS). <b><i>Methods:</i></b> We systematically searched MEDLINE, Embase, The Cochrane Library, PROSPERO, and clinicaltrials.gov databases for studies published from 2000 to November 10, 2021, cross-referencing relevant literature and contacting experts. We included diagnostic accuracy studies and systematic reviews of biochemical or lung function tests identifying the need for surfactant in preterm neonates ≤34 weeks’ with RDS not intubated at birth. The authors individually assessed the risk of bias following a tailored QUADAS-2 tool. <b><i>Results:</i></b> Eight studies, including 810 infants, met the inclusion criteria. Four tests were included: the click test, the stable microbubble test, the lamellar body count on gastric aspirates, and the forced oscillation technique. The reference standards were transparent criteria for distinguishing the infants according to oxygen requirement, which reflected the current criteria for surfactant therapy. The risk of bias was judged high because of the population selection and exclusion of participants from the analysis. There were no serious concerns regarding blinding and applicability. The individual study sensitivity and specificity range from 0.60 to 1 and from 0.51 to 0.91, respectively. It was not appropriate to combine the accuracy estimates in a meta-analysis because of the heterogeneity of the study characteristics. <b><i>Conclusions:</i></b> Current evidence is insufficient to recommend biochemical and lung function tests for tailoring surfactant therapy.
DOI: 10.6084/m9.figshare.6870101.v2
title: JARVIS-ML-CFID-descriptors and material properties

description: Classical force-field inspired descriptors (CFID) for more than 35000 materials and their material properties such as bandgap, formation energies, modulus of elasticity etc.<br>See JARVIS-ML:https://www.ctcms.nist.gov/jarvisml/<br>https://jarvis.nist.gov/<br><br>########################################Example:import os,jsonimport pandas as pdf = open(os.path.join(os.getcwd(),'jml_3d-4-26-2020.json'),'r')dataml=json.load(f)f.close()df=pd.DataFrame(dataml) <br><pre>typical_data_ranges = {'formation_energy_peratom': [-5, 5], 'optb88vdw_bandgap': [0, 10], 'mbj_bandgap': [0, 10], 'bulk_modulus_kv': [0, 250], 'shear_modulus_gv': [0, 250], 'epsx': [0, 60], 'epsy': [0, 60], 'epsz': [0, 60], 'mepsx': [0, 60], 'mepsy': [0, 60], 'mepsz': [0, 60], 'n-Seebeck': [-600, 10], 'n-powerfact': [0, 5000], 'p-Seebeck': [-10, 600], 'p-powerfact': [0, 5000], 'slme': [0, 40], 'spillage': [0, 4], 'encut': [0, 2000], 'kpoint_length_unit': [0, 200], 'dfpt_piezo_max_dielectric': [0, 100], 'dfpt_piezo_max_dij': [0, 3000], 'dfpt_piezo_max_eij': [0, 10], 'ehull': [0, 1], 'electron_avg_effective_masses_300K': [0, 3], 'hole_avg_effective_masses_300K': [0, 3], 'exfoliation_energy': [0, 1000], 'magmom_oszicar': [0, 10], 'max_ir_mode': [0, 4000], 'total_energy_per_atom': [-10, 3]}</pre><br>import numpy as np%matplotlib inlineimport matplotlib.pyplot as pltval=np.array(df['formation_energy_peratom'].replace('na',np.nan).dropna().values,dtype='float')plt.hist(val,bins=np.arange(-4,4,.5))<br>#########################################For more details about using the dataset, use the jupyter-notebooks:https://github.com/usnistgov/jarvis
DOI: 10.17632/j96dmmsxrg
title: Appendix II: Compositional Distributions and Evolutionary Processes for the Near-Earth Object Population: Results from the MIT-Hawaii Near-Earth Object Spectroscopic Survey (MITHNEOS)

description: Tabulation of Taxonomic and Principal Component Analysis for near-Earth objects observed in the MIT-Hawaii Near-Earth Object Spectroscopic Survey (MITHNEOS)
DOI: 10.6084/m9.figshare.3551043.v1
title: Appendix B. Calculation of standard errors, superpopulation estimates, and confidence intervals for Alley North samples.

description: Calculation of standard errors, superpopulation estimates, and confidence intervals for Alley North samples.
DOI: 10.6084/m9.figshare.12000234.v1
title: Research Papers_NMTT Portal Dedicated Links.xlsx

description: Dataset for PMMMNMTT Portal.
DOI: 10.6084/m9.figshare.22491301.v1
title: Luminex results

description: These data are the results of the Luminex assays on serum from the patients in this study. Each spreadsheet is one run on one kit. Patient results are presented in the 'obs conc' spreadsheet. Patients are identifiable by their study number followed by -01 or -03 or -07 to indicate the day of the sample. -01 is admission to ICU; 03 is day 3 of admission (results not used in publication); and 07 is day 7 of admission to ICU.
DOI: 10.6084/m9.figshare.22691194.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.5890567.v1
title: Modern coral depth distributions used to calculate past sea levels (Hibbert et al., 2018, Scientific Data)

description: Empirically derived modern coral depth distributions used as a modern analogue to reconstruct sea level (Hibbert et al., 2018, <i>Scientific Data</i>, accepted). <br><br>This is the latest iteration of these taxon-specific depth distributions, derived from the 2017 update to the Ocean Biogeographical Information System (OBIS, 2017). We use this data to define taxon-specific depth distributions that are then used to reconstruct sea level from fossil corals using the methodology in Hibbert et al., 2016 (<i>Quaternary Science Reviews</i> 145, 1-56).<br>
DOI: 10.6084/m9.figshare.28891511.v2
title: Exocarpium Citri Grandis Attenuates Lipopolysaccharide-Induced Acute Liver Injury Through Dual Suppression of Data for Inflammatory Response and Apoptotic Pathways

description: This study investigates Exocarpium Citri Grandis (ECG)'s therapeutic effects on LPS-induced acute liver injury (ALI) through network pharmacology and murine models. ECG treatment significantly reduced serum AST/ALT levels and alleviated hepatic damage in mice, as confirmed by histopathological analysis. The herbal extract demonstrated dual anti-inflammatory and anti-cell death mechanisms by downregulating pro-inflammatory cytokines (IL-6, IL-1β, TNFα) through qPCR analysis, while simultaneously modulating apoptosis and ferroptosis markers. Network pharmacology revealed ECG's multi-target action on critical pathways involving inflammation regulation and cell survival. Molecular docking simulations validated interactions between ECG's bioactive components and key apoptotic/inflammatory regulators. These findings position ECG as a promising natural therapeutic for ALI treatment, combining traditional medicinal use with evidence-based mechanisms of action. The integrated approach confirms ECG's potential to mitigate liver injury through coordinated modulation of inflammatory responses and programmed cell death pathways, warranting further clinical exploration of this traditional Chinese medicine for managing severe hepatic conditions.
DOI: 10.6084/m9.figshare.17087264.v1
title: Data.xlsx

description: The dataset includes two groups of microcosm experiments, historic data of Bohai Sea and a series of numerical experiments.
DOI: 10.6084/m9.figshare.c.3894799_d6.v1
title: Additional file 3: Table S3. of Genome-wide association mapping for root cone angle in rice

description: List of the accessions included the japonica panel with their phenotype. (XLSX 27Â kb)
DOI: 10.17632/2p8w7p8kty
title: Analysis of App Recommendations and User Reviews

description: This dataset provides a detailed sentiment analysis of user reviews for the app, alongside comprehensive app information from the Google Play Store. The first dataset (App_Sentiment_Analysis.csv) includes translated review texts, sentiment classifications, and numerical scores for sentiment polarity and subjectivity, offering insights into user opinions and experiences. The second dataset (Review.csv) covers various attributes of several apps, such as their ratings, review counts, sizes, installation numbers, content ratings, genres, and more. Together, these datasets facilitate a thorough analysis of user feedback and app performance, supporting app recommendation and improvement strategies.
DOI: 10.6084/m9.figshare.14256329.v1
title: Coding of the interview with a teacher from Social Studies department

description: The document presents an example of the intervew coding with a teacher from Social Studies department. The data was analyzed as a part of the primary research of the study "Teachers' perception of collaborative culture and its effect on their porfessional practice in Kazakhstan".
DOI: 10.17632/m58bdhy2df
title: Data for: First endurance activity of a Brushless DC motor for aerospace applications - REPRISE project

description: The data consists of a set of measures from an Electro-Mechanical Actuator (EMA) employed in small aircrafts, such as phase currents, positions, temperature and loads. A test bench was developed to perform endurance tests with various loads and working conditions. Specifically, two datasets are provided: (i) measurements used to monitor the EMA degradation through time; (ii) measurements that characterize the EMA closed-loop dynamic behaviour in healthy condition. The data are helpful to develop and test system identification methods and condition monitoring approaches.
DOI: 10.6084/m9.figshare.3526361.v1
title: Appendix B. A description and example using simulated data of the bivariate K-function test for dependence between two temporal point processes.

description: A description and example using simulated data of the bivariate K-function test for dependence between two temporal point processes.
DOI: 10.6084/m9.figshare.14739411.v1
title: BLAST result

description: BLAST results of all bacteria in the soil under oak and pine tree. BLAST results of representative 8 bacteria used in experiments are also shown in separated sheet.
DOI: 10.6084/m9.figshare.28497362.v1
title: Smart hotel and SDG

description: This study aims to predict the factors of behavioral intentions of guests’ perceptions of contactless technology.
DOI: 10.6084/m9.figshare.7506152.v4
title: New data from Monoplacophora helps resolve molluscan relationships

description: Laevipilina antarctica genome, open reading frames, data matrices, and results of phylogenetic analyses.<br>Update 6 May 2021: The original archive file did not include the final genome assembly for Laevipilina antarctica. The updated file includes the genome assembly described in the paper +/- blobtools decontamination.<br>
DOI: 10.6084/m9.figshare.24574174.v6
title: Telecommunication Telepathy

description: Database, syntax code, and materials of the paper: "Sheldrake, R., Stedall, T. & Tressoldi, P. (2025). Telecommunication Telepathy: A meta-analysis. Journal of Anomalous Experience and Cognition, 5, 1, 47-69; https://doi.org/10.31156/jaex.25934"<br>
DOI: 10.6084/m9.figshare.12018303.v2
title: Bio Detective dataset.xlsx

description: Dataset related to game-based learning outcomes and in-game behaviors
DOI: 10.6084/m9.figshare.3519872.v1
title: Supplement 1. The resulting PLSR model coefficients (and their uncertainties) for predicting foliar traits using leaf-level dried and ground spectral reflectance data.

description: File List PLSR_Model_Coefficients.csv (MD5: f08d202ddec2d8250d8153cc56ffa0ab) Description The PLSR_Model_Coefficients.csv file is a comma-delimited file. It contains the resulting PLSR model coefficients (and their uncertainties) for predicting foliar traits using leaf-level dried and ground spectral reflectance data. The full model represents the coefficients generated using the full calibration data set (i.e., all samples) while the mean and standard deviation (S.D.) are derived from the 1000× jackknife models using a 70/30 split of the full calibration data set. Cells without numbers show where wavelengths were not utilized in the PLSR modeling.
DOI: 10.17632/jj273bvrcw
title: Rengidil-Neveser and Ruhnevaz-Buselik pieces for Machine Learning Classification

description: This data set contains Turkish music pieces written with SymbTr notation.
There are 12 Rengidil, 44 Neveser compositions, 22 Ruhnevaz and 73 Bûselik compositions.
In addition, there 16 features which are extracted from the given notes, such as arithmetic mean of all the notes in the piece given in Holderian commas or the highest note of the piece.
DOI: 10.6084/m9.figshare.24905853.v1
title: SpatialNetworkStructure-main.zip

description: A heuristic approach for extracting multi-hierarchical spatial network structures from massive origin-destination flow data
DOI: 10.6084/m9.figshare.14446800.v1
title: Supplementary Material for: Hydroxychloroquine Inhibits Cardiac Conduction in Aged Patients with Nonmalaria Diseases

description: <b><i>Background:</i></b> The COVID-19 pandemic has brought increased focus on hydroxychloroquine (HCQ), as doctors, the medical community, and policymakers around the world attempt to understand how the risks of HCQ weigh against unknown benefits. We aim to evaluate the effects of HCQ on cardiac conduction, thus contributing to the global understanding of implications of HCQ use. <b><i>Methods:</i></b> We reviewed 717 cases of nonmalaria patients treated with HCQ (302) or without HCQ (415) in our hospital from 2008 to 2019, analyzed the cardiac conduction recorded by electrocardiogram (122 vs. 180) including heart rate (HR), PR, and corrected-QT (QTc) intervals, and explored the relationship of cardiac conduction with age, HCQ dosage, HCQ duration, sex, and primary diseases in HCQ users. <b><i>Results:</i></b> The all-cause mortality is similar between HCQ and non-HCQ groups (4.0 vs. 4.3%, <i>p</i> = 0.85). Patients aged 45 years or older, not younger ones, have lower HR (80.1 ± 1.7 vs. 85.7 ± 1.8 bpm, <i>p</i> = 0.03) but longer PR (163 ± 3.4 vs. 146.6 ± 4.2 ms, <i>p</i> = 0.003) and QTc (417.8 ± 3.8 vs. 407.7 ± 2.7 ms, <i>p</i> = 0.03) in HCQ than those in non-HCQ. The age in the HCQ group is positively correlated with PR (<i>R</i> = 0.31, <i>p</i> &lt; 0.01) and QTc (<i>R</i> = 0.34, <i>p</i> &lt; 0.01) but not HR. HR, PR, and QTc are not related to HCQ dosage (0.1–0.6 g/day), HCQ duration (0.2–126 months), sex, primary diseases, and repeated exams. <b><i>Conclusion:</i></b> Age is the most important risk factor of HCQ on cardiac conduction in nonmalaria patients. Electrocardiogram monitoring is suggested in aged patients due to the effects of HCQ on HR, PR, and QTc.
DOI: 10.6084/m9.figshare.21901140.v2
title: GFPA dataset

description: All dataset of GFPA come from a COVID-19 disease progression study conducted by Muzlifah Haniffa <em>et al.(https://doi.org/10.1038/s41591-021-01329-2)</em> healthy_pbmc_MH8919333.h5ad "healthy_pbmc_MH8919333.h5ad" is the dataset for the MH8919333 sample. All_healthy_pbmc.h5ad "All_healthy_pbmc.h5ad" contains 24 PBMC samples. msigdb_v2022.1.Hs_GMTs.zip "msigdb_v2022.1.Hs_GMTs.zip" contains all human related gene function genes in Msigdb database. All gene function sets are in GMT format. <br> msigdb_v2022.1.Mm_GMTs.zip "msigdb_v2022.1.Mm_GMTs.zip" contains all mouse related gene function genes in Msigdb database. All gene function sets are in GMT format. Code, python package and tutorial <strong>Github repository:</strong> https://github.com/studentiz/GFPA/ <strong>Pypi:</strong> https://pypi.org/project/gfpa/ <strong>Tutorial:</strong> https://github.com/studentiz/GFPA/blob/main/Tutorial/ <br>
DOI: 10.6084/m9.figshare.26489773.v1
title: Data for Change in functional trait diversity mediates the effects of nutrient addition on grassland stability

description: The files contain data from ten long-term NutNet (ranging from 10 to 15 years). That is, year 1 to year 15 cover and biomass data under ambient and nutrient addition (by NPK) conditions. The files also contain species-level leaf traits, that is, leaf C, leaf N, leaf P, leaf K, SLA, and the integrated trait (slow-fast leaf economic spectrum) based on 102 plant species under ambient and nutrient addition conditions at 10 NutNet sites. Furthermore, growing season at these 10 NutNet sites are included. Precipitation and potential evapotranspiration used to calculate the standardized precipitation–evapotranspiration index (SPEI) were downloaded from https://crudata.uea.ac.uk/cru/data/hrg/cru_ts_4.07/.