cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14718503.v1
title: Partially Observed Dynamic Tensor Response Regression

description: In modern data science, dynamic tensor data prevail in numerous applications. An important task is to characterize the relationship between dynamic tensor datasets and external covariates. However, the tensor data are often only partially observed, rendering many existing methods inapplicable. In this article, we develop a regression model with a partially observed dynamic tensor as the response and external covariates as the predictor. We introduce the low-rankness, sparsity, and fusion structures on the regression coefficient tensor, and consider a loss function projected over the observed entries. We develop an efficient nonconvex alternating updating algorithm, and derive the finite-sample error bound of the actual estimator from each step of our optimization algorithm. Unobserved entries in the tensor response have imposed serious challenges. As a result, our proposal differs considerably in terms of estimation algorithm, regularity conditions, as well as theoretical properties, compared to the existing tensor completion or tensor response regression solutions. We illustrate the efficacy of our proposed method using simulations and two real applications, including a neuroimaging dementia study and a digital advertising study.
DOI: 10.6084/m9.figshare.12097116.v1
title: Additional file 4 of Impact of spring freshet flooding and summer rainfall flooding on the water quality of an alpine barrier lake

description: Additional file 4. Hydraulic power plant.
DOI: 10.6084/m9.figshare.16815705.v1
title: Additional file 3 of Comprehensive mapping of binding hot spots of SARS-CoV-2 RBD-specific neutralizing antibodies for tracking immune escape variants

description: Additional file 3: Table S2. Sequence analysis of RBD-specific mAbs.
DOI: 10.6084/m9.figshare.16815708
title: Additional file 4 of Comprehensive mapping of binding hot spots of SARS-CoV-2 RBD-specific neutralizing antibodies for tracking immune escape variants

description: Additional file 4: Table S5. The information of epitope targeted by RBD-specific mAbs.
DOI: 10.6084/m9.figshare.16815702.v1
title: Additional file 2 of Comprehensive mapping of binding hot spots of SARS-CoV-2 RBD-specific neutralizing antibodies for tracking immune escape variants

description: Additional file 2: Table S1. In vitro binding and neutralizing activity of RBD-specific mAbs.
DOI: 10.6084/m9.figshare.10003094
title: First record of pseudoscorpions in the Eastern honey bee colonies in China

description: Pseudoscorpions, considered to be beneficial to human beings, are a class of tiny predatory arachnids. They have been reported to be associated with honey bees and were regarded as a potential biocontrol agent against <i>Varroa destructor</i> mites, the most severe biotic threat to apiculture. Here, we found three pseudoscorpions in <i>Apis cerana</i> colonies in Southeast China. The appearance and the sizes of each body part of the samples were recorded. After sequencing the <i>cox1</i> gene fragment in the mtDNA, the collected pseudoscorpions were assigned to the genus <i>Ellingsenius</i>. Furthermore, phylogenetic analyses indicated that our samples might be a new pseudoscorpion species. To our knowledge, this is the first report of pseudoscorpions in <i>Apis cerana</i> colonies in China, providing new evidence for the symbiosis of native honey bees and their inhabitants.
DOI: 10.6084/m9.figshare.10003094.v1
title: First record of pseudoscorpions in the Eastern honey bee colonies in China

description: Pseudoscorpions, considered to be beneficial to human beings, are a class of tiny predatory arachnids. They have been reported to be associated with honey bees and were regarded as a potential biocontrol agent against <i>Varroa destructor</i> mites, the most severe biotic threat to apiculture. Here, we found three pseudoscorpions in <i>Apis cerana</i> colonies in Southeast China. The appearance and the sizes of each body part of the samples were recorded. After sequencing the <i>cox1</i> gene fragment in the mtDNA, the collected pseudoscorpions were assigned to the genus <i>Ellingsenius</i>. Furthermore, phylogenetic analyses indicated that our samples might be a new pseudoscorpion species. To our knowledge, this is the first report of pseudoscorpions in <i>Apis cerana</i> colonies in China, providing new evidence for the symbiosis of native honey bees and their inhabitants.
DOI: 10.23728/b2share.a11c6e8025b4453db25669ff041bbaf4
title: Yearly Hydrological Variables Hohes Holz

description: Annual values of precipitation, evapotranspiration and potential evapotranspiration (Penman-Monteith method as implemented in bigleaf). Missing values of ET were filled with standard procedures of REddyProc, missing values of PET were filled with a Kalman filter (max. 4 hours), remaining gaps were filled with average values of the same time (+/-2h) of other years. Details of the measurements are described at https://www.nature.com/articles/s41598-023-38087-9
DOI: 10.6084/m9.figshare.22586063
title: Impact of donor diabetes mellitus status on liver transplant outcomes in patients with acute-on-chronic liver failure

description: Liver transplantation (LT) is the most effective way to save patients with acute-on-chronic liver failure (ACLF). However, the impact of donor diabetes mellitus (DM) on LT outcomes in patients with ACLF has not been fully investigated. We retrospectively analyzed data from the Scientific Registry of Transplant Recipients (SRTR) between January 1<sup>st</sup>, 2008 to December 31<sup>st</sup>, 2017 in this study. All the patients were divided into donors with DM and without DM group (DM: 1,394; non-DM: 11138). We compared the overall survival (OS) and graft survival (GS) across different estimated ACLF (estACLF) grades between two groups. There were 25.10% estACLF-3 patients in the entire cohort. And in estACLF-3 patients, 318 patients had DM donors. The estACLF-3 associated 5-year OS rate in the non-DM group was 74.6%, significantly better than that in the DM group, with corresponding survival rate at 64.9% (<i>P</i> &lt; 0.001). Donor DM was an independent predictor for OS in the entire cohort as well as in estACLF-3 patients. Donor DM was associated with inferior outcomes of LT in patients with estACLF-3. However, the differences were not obvious in recipients with other estACLF grades.
DOI: 10.6084/m9.figshare.22586063.v1
title: Impact of donor diabetes mellitus status on liver transplant outcomes in patients with acute-on-chronic liver failure

description: Liver transplantation (LT) is the most effective way to save patients with acute-on-chronic liver failure (ACLF). However, the impact of donor diabetes mellitus (DM) on LT outcomes in patients with ACLF has not been fully investigated. We retrospectively analyzed data from the Scientific Registry of Transplant Recipients (SRTR) between January 1<sup>st</sup>, 2008 to December 31<sup>st</sup>, 2017 in this study. All the patients were divided into donors with DM and without DM group (DM: 1,394; non-DM: 11138). We compared the overall survival (OS) and graft survival (GS) across different estimated ACLF (estACLF) grades between two groups. There were 25.10% estACLF-3 patients in the entire cohort. And in estACLF-3 patients, 318 patients had DM donors. The estACLF-3 associated 5-year OS rate in the non-DM group was 74.6%, significantly better than that in the DM group, with corresponding survival rate at 64.9% (<i>P</i> &lt; 0.001). Donor DM was an independent predictor for OS in the entire cohort as well as in estACLF-3 patients. Donor DM was associated with inferior outcomes of LT in patients with estACLF-3. However, the differences were not obvious in recipients with other estACLF grades.
DOI: 10.6084/m9.figshare.24683319
title: First Results from REPTile 2 Measurements onboard CIRBE

description: This includes the dataset and codes used for the paper titled 'First Results from REPTile 2 Measurements onboard CIRBE‘. This paper is submitted to Geophysical Research Letters.
DOI: 10.6084/m9.figshare.24159041
title: Assessment of vaccinations and breakthrough infections after adjustment of the dynamic zero-COVID-19 strategy in China: an online survey

description: Coronavirus disease 2019 (COVID-19) cases in China has grown rapidly after adjustment of the dynamic zero-COVID-19 strategy. However, how different vaccination states affect symptoms, severity and post COVID conditions was unclear. Here, we used an online questionnaire to investigate the infection status of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) among 11,897 participants, with 55.55% positive and 28.42% negative. The common COVID-19 symptoms were fatigue (73.31%), cough (70.02%), fever (65.25%) and overall soreness (58.64%); self-reported asymptomatic infection accounted for 0.7% of participants. The persistent symptoms at 1 month after infection included fatigue (48.7%), drowsiness (34.3%), cough (30.1%), decreased exercise ability (23.1%) and pharyngeal discomfort (19.4%), which was reduced by more than 200% at 2 months. Participants with complications such as chronic obstructive pulmonary disease, respiratory diseases, diabetes, hypertension, etc. have a higher proportion of hospitalization and longer recovery time (<i>p </i>&lt; = 0.01). Multiple vaccination statuses reduced the infection (<i>p</i> &lt; 0.001) and severity rates (<i>p</i> = 0.022) by varying degrees as well as reduced the risk of high fever (&gt;39.1 °C), chills, diarrhea and ageusia/anosmia, respectively (<i>p</i> &lt; 0.05). Vaccination may enhance some upper respiratory symptoms, including sore throat, nasal congestion and runny nose, respectively (<i>p</i> &lt; 0.05). Participants who had been vaccinated within 3 months were better protected by helping reduce their risk of overall soreness, chills and ageusia/anosmia, respectively (<i>p</i> &lt; 0.05). In conclusion, our work has updated the epidemic characteristics of the breakthrough infection (BTI) wave after the dynamic zero-COVID-19 strategy, providing data and insights on how different vaccination statuses affect COVID-19 symptoms and disease prognosis.
DOI: 10.6084/m9.figshare.24159041.v1
title: Assessment of vaccinations and breakthrough infections after adjustment of the dynamic zero-COVID-19 strategy in China: an online survey

description: Coronavirus disease 2019 (COVID-19) cases in China has grown rapidly after adjustment of the dynamic zero-COVID-19 strategy. However, how different vaccination states affect symptoms, severity and post COVID conditions was unclear. Here, we used an online questionnaire to investigate the infection status of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) among 11,897 participants, with 55.55% positive and 28.42% negative. The common COVID-19 symptoms were fatigue (73.31%), cough (70.02%), fever (65.25%) and overall soreness (58.64%); self-reported asymptomatic infection accounted for 0.7% of participants. The persistent symptoms at 1 month after infection included fatigue (48.7%), drowsiness (34.3%), cough (30.1%), decreased exercise ability (23.1%) and pharyngeal discomfort (19.4%), which was reduced by more than 200% at 2 months. Participants with complications such as chronic obstructive pulmonary disease, respiratory diseases, diabetes, hypertension, etc. have a higher proportion of hospitalization and longer recovery time (<i>p </i>&lt; = 0.01). Multiple vaccination statuses reduced the infection (<i>p</i> &lt; 0.001) and severity rates (<i>p</i> = 0.022) by varying degrees as well as reduced the risk of high fever (&gt;39.1 °C), chills, diarrhea and ageusia/anosmia, respectively (<i>p</i> &lt; 0.05). Vaccination may enhance some upper respiratory symptoms, including sore throat, nasal congestion and runny nose, respectively (<i>p</i> &lt; 0.05). Participants who had been vaccinated within 3 months were better protected by helping reduce their risk of overall soreness, chills and ageusia/anosmia, respectively (<i>p</i> &lt; 0.05). In conclusion, our work has updated the epidemic characteristics of the breakthrough infection (BTI) wave after the dynamic zero-COVID-19 strategy, providing data and insights on how different vaccination statuses affect COVID-19 symptoms and disease prognosis.
DOI: 10.6084/m9.figshare.24159148
title: Additional file 1 of Integrative analysis of genome and transcriptome reveal the genetic basis of high temperature tolerance in pleurotus giganteus (Berk. Karun & Hyde)

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24159148.v1
title: Additional file 1 of Integrative analysis of genome and transcriptome reveal the genetic basis of high temperature tolerance in pleurotus giganteus (Berk. Karun & Hyde)

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.21975272.v1
title: Fertilization control over SOC stocks

description: We synthesized a country-scale database to explore the fertilization control over SOC stocks and identified the dominant drivers and pathways in upland and paddy systems.
DOI: 10.6084/m9.figshare.24159151
title: Additional file 2 of Integrative analysis of genome and transcriptome reveal the genetic basis of high temperature tolerance in pleurotus giganteus (Berk. Karun & Hyde)

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.24159151.v1
title: Additional file 2 of Integrative analysis of genome and transcriptome reveal the genetic basis of high temperature tolerance in pleurotus giganteus (Berk. Karun & Hyde)

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.24159157
title: Additional file 3 of Integrative analysis of genome and transcriptome reveal the genetic basis of high temperature tolerance in pleurotus giganteus (Berk. Karun & Hyde)

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.24159157.v1
title: Additional file 3 of Integrative analysis of genome and transcriptome reveal the genetic basis of high temperature tolerance in pleurotus giganteus (Berk. Karun & Hyde)

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.24159174
title: Additional file 9 of Jasmonate signaling drives defense responses against Alternaria alternata in chrysanthemum

description: Additional file 9: Table S1. Summary of reads mapping
DOI: 10.6084/m9.figshare.24159174.v1
title: Additional file 9 of Jasmonate signaling drives defense responses against Alternaria alternata in chrysanthemum

description: Additional file 9: Table S1. Summary of reads mapping
DOI: 10.6084/m9.figshare.24159177
title: Additional file 10 of Jasmonate signaling drives defense responses against Alternaria alternata in chrysanthemum

description: Additional file 10: Table S2. Primer sequences used in qRT-PCR for the validation of dual RNA-seq data.
DOI: 10.6084/m9.figshare.24159177.v1
title: Additional file 10 of Jasmonate signaling drives defense responses against Alternaria alternata in chrysanthemum

description: Additional file 10: Table S2. Primer sequences used in qRT-PCR for the validation of dual RNA-seq data.
DOI: 10.6084/m9.figshare.24159180
title: Additional file 11 of Jasmonate signaling drives defense responses against Alternaria alternata in chrysanthemum

description: Additional file 11: Table S3. Shortlisted genes from differential expression analysis that have a potential role in defense response to A. alternate infection
DOI: 10.6084/m9.figshare.24159180.v1
title: Additional file 11 of Jasmonate signaling drives defense responses against Alternaria alternata in chrysanthemum

description: Additional file 11: Table S3. Shortlisted genes from differential expression analysis that have a potential role in defense response to A. alternate infection
DOI: 10.14473/csda/hysp4n/l6qk5n
title: D_V1505.pdf

description: Dotazník
DOI: 10.14473/csda/hysp4n/rdpcmb
title: NS_1505_DataFile-FINAL_bez_jmen.tab

description: Data
DOI: 10.14473/csda/hysp4n/anw0hw
title: TI_V1505.pdf

description: Technická informace
DOI: 10.14473/csda/hysp4n/vjpltz
title: K_V1505.pdf

description: Karty
DOI: 10.14473/csda/hysp4n/idi3tj
title: PR06_V1505.pdf

description: Veřejnost o energetice – květen 2015. Tisková zpráva CVVM.
DOI: 10.14473/csda/hysp4n/mf3qt8
title: PR11_V1505.pdf

description: Veřejné mínění o interrupci, eutanazii a trestu smrti – květen 2015. Tisková zpráva CVVM.
DOI: 10.14473/csda/hysp4n/3v35nf
title: PR07_V1505.pdf

description: Hodnocení ochrany životního prostředí - květen 2015. Tisková zpráva CVVM.
DOI: 10.14473/csda/hysp4n/jimsbl
title: PR04_V1505.pdf

description: Hodnocení činnosti ministerstev – květen 2015. Tisková zpráva CVVM.
DOI: 10.14473/csda/hysp4n/xuvbes
title: PR12_V1505.pdf

description: Občané o hospodářské situaci ČR a o životní úrovni svých domácností – květen 2015. Tisková zpráva CVVM.
DOI: 10.6084/m9.figshare.24159306
title: Additional file 2 of Structural variation and introgression from wild populations in East Asian cattle genomes confer adaptation to local environment

description: Additional file 2: Table S1. Samples collected for genome assembly. Table S2. Quality evaluation of the assembled genomes using BUSCO (v3.0.2) software with the “mammalia_odb9” dataset. Table S3. Mapping ratio of Illumina reads to Hainan_v1 and Mongolian_v1 genomes. Table S4. Repeat annotation in the Mongolian_v1 genome. Table S5. Repeat annotation in the Hainan_v1 genome. Table S6. Polymorphism statistics. Table S7. SNP and Indel statistics of 373 Illumina data mapping to Hainan_v1, Mongolian_v1 and ARS_UCD1.2 genomes, respectively. Table S8. Genomic landscape of SVs (insertions and deletions) in the Hainan_v1 (Qry) and Mongolian_v1 (Ref) genomes. Table S9. Mapping ratio of Nanopore long reads to the Mongolian_v1 genome. Table S10. SVs statistics of different sets. Table S11. Population stratified structural variations (SVs) detected by LRS between Hainan and Mongolian cattle. Table S12. Distribution of LRS-based SV in different functional regions of the genome. Table S13. Summary of Illumina short-read sequencing data (mapping to Mongolian_v1 only chromosome scaffolds) used in this study. Table S14. Significantly enriched KEGG pathways and GO terms (adjusted P &lt; 0.05) in genes affected by significant population stratification SVs. Table S15. Structural variations (SVs) that overlapped with ATAC peak. Table S16. North‒south stratified SVs that may be derived from banteng introgression. Table S17. The information of RT-PCR primers. Table S18. Summary of ATAC-seq and ChIP-seq data used in this study.
DOI: 10.6084/m9.figshare.24159306.v1
title: Additional file 2 of Structural variation and introgression from wild populations in East Asian cattle genomes confer adaptation to local environment

description: Additional file 2: Table S1. Samples collected for genome assembly. Table S2. Quality evaluation of the assembled genomes using BUSCO (v3.0.2) software with the “mammalia_odb9” dataset. Table S3. Mapping ratio of Illumina reads to Hainan_v1 and Mongolian_v1 genomes. Table S4. Repeat annotation in the Mongolian_v1 genome. Table S5. Repeat annotation in the Hainan_v1 genome. Table S6. Polymorphism statistics. Table S7. SNP and Indel statistics of 373 Illumina data mapping to Hainan_v1, Mongolian_v1 and ARS_UCD1.2 genomes, respectively. Table S8. Genomic landscape of SVs (insertions and deletions) in the Hainan_v1 (Qry) and Mongolian_v1 (Ref) genomes. Table S9. Mapping ratio of Nanopore long reads to the Mongolian_v1 genome. Table S10. SVs statistics of different sets. Table S11. Population stratified structural variations (SVs) detected by LRS between Hainan and Mongolian cattle. Table S12. Distribution of LRS-based SV in different functional regions of the genome. Table S13. Summary of Illumina short-read sequencing data (mapping to Mongolian_v1 only chromosome scaffolds) used in this study. Table S14. Significantly enriched KEGG pathways and GO terms (adjusted P &lt; 0.05) in genes affected by significant population stratification SVs. Table S15. Structural variations (SVs) that overlapped with ATAC peak. Table S16. North‒south stratified SVs that may be derived from banteng introgression. Table S17. The information of RT-PCR primers. Table S18. Summary of ATAC-seq and ChIP-seq data used in this study.
DOI: 10.6084/m9.figshare.24159339
title: Additional file 1 of Metabolite profiling and transcriptomic analyses demonstrate the effects of biocontrol agents on alkaloid accumulation in Fritillaria thunbergii

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24159339.v1
title: Additional file 1 of Metabolite profiling and transcriptomic analyses demonstrate the effects of biocontrol agents on alkaloid accumulation in Fritillaria thunbergii

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.16815725
title: Additional file 6 of Genome-wide identification and expression profile analysis of trihelix transcription factor family genes in response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]

description: Additional file 6 Table S6. Primer sequences for qPCR.
DOI: 10.6084/m9.figshare.16815722
title: Additional file 5 of Genome-wide identification and expression profile analysis of trihelix transcription factor family genes in response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]

description: Additional file 5 Table S5. Results of Tajima’s D neutrality test.
DOI: 10.6084/m9.figshare.16815719
title: Additional file 4 of Genome-wide identification and expression profile analysis of trihelix transcription factor family genes in response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]

description: Additional file 4 Table S4. One-to-one orthologous gene relationships between S. bicolor and other plants. (XLS 43 kb)
DOI: 10.15156/bio/sh102777.07fu
title: SH102777.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh102778.07fu
title: SH102778.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.