cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7297463
title: P and N deficiency change the relative abundance and function of rhizosphere microorganisms during cluster root development of white lupin (<i>Lupinus albus</i> L.)

description: We studied microbe-plant interactions of white lupin, a cluster root-forming plant, under low P and N conditions to examine increased nutrient acquisition by plants either by a shift to a more specialized microbial community or changes in microbial enzyme production. White lupin plants were grown in rhizoboxes filled with either P- or N-deficient soil; fertilized soil was used as control. After cultivation of plants in a glasshouse for 41 d, plant growth (shoot and roots) and P and N accumulation in shoots were measured. Microbial functions were analyzed by P- and N-cycling enzymes. The microbial community structure was estimated by fingerprinting (denaturing gradient gel electrophoresis) and sequencing techniques. P deficiency induced the released citrate and acid phosphomonoesterases from cluster roots and stimulated the production of microbe-derived alkaline phosphomonoesterase in the rhizosphere. P deficiency decreased microbial diversity in the cluster root rhizosphere. Increased relative abundance of Burkholderiales in the rhizosphere of P deficient plants might be responsible for the degradation of different organic P fractions such as phytates. N deficiency induced an increase of the number of nodules and P concentration in shoot as well as roots of white lupin. We clarified that high release of citrate from cluster roots might be the preferred mechanisms to meet the P demand of nodulated plants under N deficiency. In addition, the high abundance of Rhizobiales and Rhodospirillales in the rhizosphere of cluster roots showed that the importance of N-fixing microorganisms under N deficiency. The contribution of rhizosphere microorganisms due to similar activities of N-cycling enzymes under the two different N treatments is less important for N nutrition of plants. Further understanding of the regulation of cluster roots under N-deficiency will provide new information on the interactions between P and N nutrition.
DOI: 10.6084/m9.figshare.7297463.v1
title: P and N deficiency change the relative abundance and function of rhizosphere microorganisms during cluster root development of white lupin (<i>Lupinus albus</i> L.)

description: We studied microbe-plant interactions of white lupin, a cluster root-forming plant, under low P and N conditions to examine increased nutrient acquisition by plants either by a shift to a more specialized microbial community or changes in microbial enzyme production. White lupin plants were grown in rhizoboxes filled with either P- or N-deficient soil; fertilized soil was used as control. After cultivation of plants in a glasshouse for 41 d, plant growth (shoot and roots) and P and N accumulation in shoots were measured. Microbial functions were analyzed by P- and N-cycling enzymes. The microbial community structure was estimated by fingerprinting (denaturing gradient gel electrophoresis) and sequencing techniques. P deficiency induced the released citrate and acid phosphomonoesterases from cluster roots and stimulated the production of microbe-derived alkaline phosphomonoesterase in the rhizosphere. P deficiency decreased microbial diversity in the cluster root rhizosphere. Increased relative abundance of Burkholderiales in the rhizosphere of P deficient plants might be responsible for the degradation of different organic P fractions such as phytates. N deficiency induced an increase of the number of nodules and P concentration in shoot as well as roots of white lupin. We clarified that high release of citrate from cluster roots might be the preferred mechanisms to meet the P demand of nodulated plants under N deficiency. In addition, the high abundance of Rhizobiales and Rhodospirillales in the rhizosphere of cluster roots showed that the importance of N-fixing microorganisms under N deficiency. The contribution of rhizosphere microorganisms due to similar activities of N-cycling enzymes under the two different N treatments is less important for N nutrition of plants. Further understanding of the regulation of cluster roots under N-deficiency will provide new information on the interactions between P and N nutrition.
DOI: 10.7284/105800
title: Gyrocompass data collected during research cruise SAV-10-15 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105802
title: Meteorological Station data collected during research cruise SAV-10-15 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297373
title: Address lookups

description: Address Lookup<br>Field description<br>sender_address masked input (sender) Bitcoin addresses of the transaction<br>transaction_id Bitcoin transaction identifier
DOI: 10.6084/m9.figshare.7297382
title: Capture dataset

description: Capture Dataset<br>Field description<br>sender_ip masked IP address from which the message was sent<br>timestamp time of capture in unix time format<br>transaction_id Bitcoin transaction identifier<br>monitoring_client_ip masked IP address of the monitoring client which recorded the message
DOI: 10.7284/105801
title: Singlebeam Echosounder data collected during research cruise SAV-10-15 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297325
title: Accepted pairings

description: Accepted Pairings<br><br>Field descriptionsuserid user identifier<br>ip_address masked IP address that is the owned by the user<br>probability probability of pairing
DOI: 10.6084/m9.figshare.7297382.v1
title: Capture dataset

description: Capture Dataset<br>Field description<br>sender_ip masked IP address from which the message was sent<br>timestamp time of capture in unix time format<br>transaction_id Bitcoin transaction identifier<br>monitoring_client_ip masked IP address of the monitoring client which recorded the message
DOI: 10.6084/m9.figshare.7297325.v1
title: Accepted pairings

description: Accepted Pairings<br><br>Field descriptionsuserid user identifier<br>ip_address masked IP address that is the owned by the user<br>probability probability of pairing
DOI: 10.6084/m9.figshare.7297346
title: User grouping

description: Grouping<br>Field description<br>address_id Bitcoin address identifier<br>timestamp user identifier that owns the Bitcoin address
DOI: 10.7284/105803
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-15 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297322
title: Identified BC transactions

description: Identified Transactions<br>Field descriptions:<br>sender_userid originator of the transaction<br>receiver_userid target of the transaction<br>value transferred Bitcoins in satoshis (1E-8 Bitcoins)<br>timestamp unix timestamp of transaction
DOI: 10.6084/m9.figshare.7297346.v1
title: User grouping

description: Grouping<br>Field description<br>address_id Bitcoin address identifier<br>timestamp user identifier that owns the Bitcoin address
DOI: 10.6084/m9.figshare.7297322.v1
title: Identified BC transactions

description: Identified Transactions<br>Field descriptions:<br>sender_userid originator of the transaction<br>receiver_userid target of the transaction<br>value transferred Bitcoins in satoshis (1E-8 Bitcoins)<br>timestamp unix timestamp of transaction
DOI: 10.7284/105805
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-16 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105817
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-17 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105812
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-17 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105813
title: Gyrocompass data collected during research cruise SAV-10-17 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105815
title: Meteorological Station data collected during research cruise SAV-10-17 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105814
title: Singlebeam Echosounder data collected during research cruise SAV-10-17 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297202
title: Atomic force microscopy indentation data of zebrafish spinal cord sections

description: The HDF5 file was created using the Python package nanite [1]. It contains 1132 raw atomic force microscopy (AFM) force-indentation curves of zebrafish spinal cord sections, the preprocessed curves, and the corresponding fits to the approach part. In addition, a manual rating was assigned to each force-indentation curve. The intended use of this dataset is the application of machine-learning approaches to quantify AFM data quality for biological tissues [2].<br>References:<br>[1] https://nanite.readthedocs.io<br>[2] https://dx.doi.org/10.1186/s12859-019-3010-3<br><br>
DOI: 10.7284/105816
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-17 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297202.v2
title: Atomic force microscopy indentation data of zebrafish spinal cord sections

description: The HDF5 file was created using the Python package nanite [1]. It contains 1132 raw atomic force microscopy (AFM) force-indentation curves of zebrafish spinal cord sections, the preprocessed curves, and the corresponding fits to the approach part. In addition, a manual rating was assigned to each force-indentation curve. The intended use of this dataset is the application of machine-learning approaches to quantify AFM data quality for biological tissues [2].<br>References:<br>[1] https://nanite.readthedocs.io<br>[2] https://dx.doi.org/10.1186/s12859-019-3010-3<br><br>
DOI: 10.7284/105818
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-18 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105826
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SAV-10-19 using a RDI WM-300 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297166
title: Distribution and phenotypic variability of the Mediterranean gorgonian <i>Paramuricea macrospina</i> (Cnidaria: Octocorallia)

description: The genus <i>Paramuricea</i> is present in the Mediterranean Sea with two species, <i>P. clavata</i> and <i>P. macrospina</i>. These species have similar bathymetric distributions and can live in sympatry. <i>P. macrospina</i> shows morphological plasticity leading sometimes to an erroneous classification as <i>P. clavata</i>. Studying four ambiguous morphotypes of <i>P. macrospina</i> collected in different localities of the Mediterranean Sea, we provide new insights on both the taxonomy and the distribution of this species. Our analyses reveal high morphological plasticity within the sampled colonies, which in two cases were characterised by a peculiar pigmentation and a morphological pattern resembling that of <i>P. clavata</i>. After having confirmed the genetic identity of the samples, we tested the validity of traditional taxonomic characters, and found that the most reliable character to discriminate between <i>P. macrospina</i> and <i>P. clavata</i> is the number of rows of spindles in the collaret of the polyps. All other features are highly variable and therefore do not allow a correct identification. The bathymetric and geographic distribution of <i>P. macrospina</i> is here updated, showing, with the exception of the south-eastern side, broad preference in the whole basin. Moreover, further studies are needed to investigate the gene flow among and within the Mediterranean populations of <i>P. macrospina</i> and to assess whether the morphological plasticity is driven by adaptive genetic processes of populations exposed to different environmental, climatic and bathymetric conditions.
DOI: 10.6084/m9.figshare.7297166.v1
title: Distribution and phenotypic variability of the Mediterranean gorgonian <i>Paramuricea macrospina</i> (Cnidaria: Octocorallia)

description: The genus <i>Paramuricea</i> is present in the Mediterranean Sea with two species, <i>P. clavata</i> and <i>P. macrospina</i>. These species have similar bathymetric distributions and can live in sympatry. <i>P. macrospina</i> shows morphological plasticity leading sometimes to an erroneous classification as <i>P. clavata</i>. Studying four ambiguous morphotypes of <i>P. macrospina</i> collected in different localities of the Mediterranean Sea, we provide new insights on both the taxonomy and the distribution of this species. Our analyses reveal high morphological plasticity within the sampled colonies, which in two cases were characterised by a peculiar pigmentation and a morphological pattern resembling that of <i>P. clavata</i>. After having confirmed the genetic identity of the samples, we tested the validity of traditional taxonomic characters, and found that the most reliable character to discriminate between <i>P. macrospina</i> and <i>P. clavata</i> is the number of rows of spindles in the collaret of the polyps. All other features are highly variable and therefore do not allow a correct identification. The bathymetric and geographic distribution of <i>P. macrospina</i> is here updated, showing, with the exception of the south-eastern side, broad preference in the whole basin. Moreover, further studies are needed to investigate the gene flow among and within the Mediterranean populations of <i>P. macrospina</i> and to assess whether the morphological plasticity is driven by adaptive genetic processes of populations exposed to different environmental, climatic and bathymetric conditions.
DOI: 10.7284/105830
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-19 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105824
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-19 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297043
title: Trehalose induces autophagy via lysosomal-mediated TFEB activation in models of motoneuron degeneration

description: Macroautophagy/autophagy, a defense mechanism against aberrant stresses, in neurons counteracts aggregate-prone misfolded protein toxicity. Autophagy induction might be beneficial in neurodegenerative diseases (NDs). The natural compound trehalose promotes autophagy via TFEB (transcription factor EB), ameliorating disease phenotype in multiple ND models, but its mechanism is still obscure. We demonstrated that trehalose regulates autophagy by inducing rapid and transient lysosomal enlargement and membrane permeabilization (LMP). This effect correlated with the calcium-dependent phosphatase PPP3/calcineurin activation, TFEB dephosphorylation and nuclear translocation. Trehalose upregulated genes for the TFEB target and regulator <i>Ppargc1a</i>, lysosomal hydrolases and membrane proteins (<i>Ctsb, Gla, Lamp2a, Mcoln1, Tpp1</i>) and several autophagy-related components (<i>Becn1, Atg10, Atg12, Sqstm1/p62, Map1lc3b, Hspb8</i> and <i>Bag3</i>) mostly in a PPP3- and TFEB-dependent manner. TFEB silencing counteracted the trehalose pro-degradative activity on misfolded protein causative of motoneuron diseases. Similar effects were exerted by trehalase-resistant trehalose analogs, melibiose and lactulose. Thus, limited lysosomal damage might induce autophagy, perhaps as a compensatory mechanism, a process that is beneficial to counteract neurodegeneration.
DOI: 10.7284/105825
title: Gyrocompass data collected during research cruise SAV-10-19 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7297043.v1
title: Trehalose induces autophagy via lysosomal-mediated TFEB activation in models of motoneuron degeneration

description: Macroautophagy/autophagy, a defense mechanism against aberrant stresses, in neurons counteracts aggregate-prone misfolded protein toxicity. Autophagy induction might be beneficial in neurodegenerative diseases (NDs). The natural compound trehalose promotes autophagy via TFEB (transcription factor EB), ameliorating disease phenotype in multiple ND models, but its mechanism is still obscure. We demonstrated that trehalose regulates autophagy by inducing rapid and transient lysosomal enlargement and membrane permeabilization (LMP). This effect correlated with the calcium-dependent phosphatase PPP3/calcineurin activation, TFEB dephosphorylation and nuclear translocation. Trehalose upregulated genes for the TFEB target and regulator <i>Ppargc1a</i>, lysosomal hydrolases and membrane proteins (<i>Ctsb, Gla, Lamp2a, Mcoln1, Tpp1</i>) and several autophagy-related components (<i>Becn1, Atg10, Atg12, Sqstm1/p62, Map1lc3b, Hspb8</i> and <i>Bag3</i>) mostly in a PPP3- and TFEB-dependent manner. TFEB silencing counteracted the trehalose pro-degradative activity on misfolded protein causative of motoneuron diseases. Similar effects were exerted by trehalase-resistant trehalose analogs, melibiose and lactulose. Thus, limited lysosomal damage might induce autophagy, perhaps as a compensatory mechanism, a process that is beneficial to counteract neurodegeneration.
DOI: 10.7284/105828
title: Meteorological Station data collected during research cruise SAV-10-19 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105827
title: Singlebeam Echosounder data collected during research cruise SAV-10-19 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105829
title: TSG (Thermosalinograph) data collected during research cruise SAV-10-19 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7296977
title: Heavy mineral data. This dataset displays heavy minerals present in each sample as a percentage. The data is displayed graphically in Figure 3. UAE_XXXX refers to the sample number. Gone with the wind: Dune provenance and sediment recycling in the northern Rub'al-Khali, United Arab Emirates, Arabia.

description: This dataset is the heavy mineral data for 148 UAE sand samples, based on optical counting methods, and expressed for each sample as a percentage. The location of the samples is given in the sample location dataset.
DOI: 10.6084/m9.figshare.7296977.v1
title: Heavy mineral data. Gone with the wind: Dune provenance and sediment recycling in the northern Rub'al-Khali, United Arab Emirates, Arabia.

description: Heavy mineral data. This dataset displays heavy minerals present in each sample as a percentage. The data is displayed graphically in Figure 3. UAE_XXXX refers to the sample number.
DOI: 10.7284/105833
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SAV-10-20 using a RDI WM-300 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7296974
title: Heavy mineral geochemistry (ICP). This dataset displays the most common geochemical components of each heavy mineral sample (expressed as a percentage), and elemental values expressed as mg/kg. Gone with the wind: Dune provenance and sediment recycling in the northern Rub'al-Khali, United Arab Emirates, Arabia.

description: <b>Heavy mineral geochemistry. </b>This dataset is the bulk heavy mineral geochemistry for 48 sand samples from the UAE, derived from Inductively Coupled Plasma-Alpha Emission Spectometry (ICP-AES). Geochemical analysis was performed using a Perkin Elmer 7300 DV ICP-AES for a suite of 27 major and trace elements. The dataset includes analyses for the most common geochemical components of each heavy mineral sample (expressed as a percentage), and elemental values are expressed as mg/kg.
DOI: 10.7284/105837
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-10-20 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7296974.v1
title: Heavy mineral geochemistry (ICP). Gone with the wind: Dune provenance and sediment recycling in the northern Rub'al-Khali, United Arab Emirates, Arabia.

description: Heavy mineral geochemistry (ICP). This dataset displays the most common geochemical components of each heavy mineral sample (expressed as a percentage), and elemental values expressed as mg/kg.
DOI: 10.6084/m9.figshare.7296974.v2
title: Heavy mineral geochemistry (ICP). This dataset displays the most common geochemical components of each heavy mineral sample (expressed as a percentage), and elemental values expressed as mg/kg. Gone with the wind: Dune provenance and sediment recycling in the northern Rub'al-Khali, United Arab Emirates, Arabia.

description: <b>Heavy Mineral geochemistry. </b>This dataset is the bulk heavy mineral geochemistry for 48 sand samples from the UAE, derived from Inductively Coupled Plasma-Alpha Emission Spectometry (ICP-AES). Geochemical analysis was performed using a Perkin Elmer 7300 DV ICP-AES for a suite of 27 major and trace elements. The dataset includes analyses for the most common geochemical components of each heavy mineral sample (expressed as a percentage), and elemental values are expressed as mg/kg.
DOI: 10.7284/105831
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-10-20 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition