cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5519/0001936
title: Supplementary Material: Surface Sediment Samples From Early Age of Seafloor Exploration Can Provide a Late 19th Century Baseline of the Marine Environment

description: Ocean-floor sediment samples collected up to 150 years ago represent an important historical archive to benchmark global changes in the seafloor environment, such as species' range shifts and pollution trends. Such benchmarking requires that the historical sediment samples represent the state of the environment at-or shortly before the time of collection. However, early oceanographic expeditions sampled the ocean floor using devices like the sounding tube or a dredge, which potentially disturb the sediment surface and recover a mix of Holocene (surface) and deeper, Pleistocene sediments. Here we use climate-sensitive microfossils as a fast biometric method to assess if historical seafloor samples contain a mixture of modern and glacial sediments. Our assessment is based on comparing the composition of planktonic foraminifera (PF) assemblages in historical samples with Holocene and Last Glacial Maximum (LGM) global reference datasets. We show that eight out of the nine historical samples contain PF assemblages more similar to the Holocene than to the LGM PF assemblages, but the comparisons are only significant when there is a high local species' temporal turnover (from the LGM to the Holocene). When analysing temporal turnover globally, we show that upwelling and temperate regions had greatest species turnover, which are areas where our methodology would be most diagnostic. Our results suggest that sediment samples from historical collections can provide a baseline of the state of marine ecosystems in the late nineteenth century, and thus be used to assess ocean global change trends. ## Related materials: Rillo MC, Kucera M, Ezard THG and Miller CG (2019) Surface Sediment Samples From Early Age of Seafloor Exploration Can Provide a Late 19th Century Baseline of the Marine Environment. Front. Mar. Sci. 5:517. doi: https://doi.org/10.3389/fmars.2018.00517 Marina Costa Rillo (2016). Dataset: Henry Buckley Collection of Planktonic Foraminifera. Natural History Museum Data Portal (data.nhm.ac.uk). https://doi.org/10.5519/0035055
DOI: 10.5519/0059001
title: Lyell Collection - Types and figured and cited specimens

description: Types and cited specimens included in the Fossil Lyell Collection (group; type status; identification; and reference).
DOI: 10.5519/0051823
title: Platypleurini phylogeny

description: Data Supporting: Out of Africa? A dated molecular phylogeny of the cicada tribe Platypleurini Schmidt (Hemiptera: Cicadidae), with a focus on African genera and the genus Platypleura Amyot & Audinet-Serville
DOI: 10.5519/0079673
title: Morelloid solanum North and Central America and the Caribbean

description: Specimens used in the monograph of the morelloid clade of Solanum occurring in North and Central America and the Caribbean Knapp S, Barboza GE, Bohs L, Särkinen T (2019) A revision of the Morelloid Clade of Solanum L. (Solanaceae) in North and Central America and the Caribbean. PhytoKeys 123: 1-144. The Morelloid Clade, also known as the black nightshades or “Maurella” (Morella), is one of the 10 major clades within the mega-diverse genus Solanum L. The clade is most species rich in the central to southern Andes, but species occur around the tropics and subtropics, some extending well into the temperate zone. Plants of the group are herbaceous or short-lived perennials, with small white or purplish white flowers, and small juicy berries. Due to the complex morphological variation and weedy nature of these plants, coupled with the large number of published synonyms (especially for European taxa), our understanding of species limits and diversity in the Morelloid Clade has lagged behind that of other major groups in Solanum. Here we provide the second in a three-part series of revisions of the morelloid solanums treating the species occurring in North and Central America and the Caribbean (for the Old World see PhytoKeys 106, the third part will treat species of South America). Synonymy, morphological descriptions, distribution maps, and common names and uses are provided for all 18 species occurring in this region. We treat 10 of these species as native, and eight as putatively naturalised, introduced and/or invasive in the region. We provide complete descriptions with nomenclatural details, including lecto- and neotypifications, for all species. Keys to all species occurring in the whole region and for each area within it (i.e., North America, Central America and Mexico, and the islands of the Caribbean), illustrations to aid identification both in herbaria and in the field, and distribution maps are provided. Preliminary conservation assessments are provided for all species. Details of all specimens examined are provided in three Supplemental Materials files [associated with the paper and on NHM Data Portal]. https://phytokeys.pensoft.net/article/31738/
DOI: 10.5519/0034315
title: Eric Robinson Collection of Ostracoda and Foraminifera

description: In 2006, Eric Robinson, formerly of University College London, donated his ostracod collection to the Natural History Museum. This collection contains slides of named taxa and assemblages from sites, mainly in the UK. The majority are ostracods but the collection does contain some Foraminifera and other miscellaneous materials picked from samples. The collections covers most of the stratigraphical column but is particularly strong in Carboniferous and Recent-Holocene with Pleistocene, Cretaceous and Jurassic particularly well represented. The collection was re-curated and ordered stratigraphically and subsequently by geographical location on arrival at the NHM. No slides have been registered individually and currently this file represents a listing of the collection. Some teaching material is present and this was supplemented by a cabinet of teaching slides that arrived with the rest of the UCL collection in 2017.
DOI: 10.5519/0042549
title: Keys to African Solanum

description: Knapp S. Vorontsova MS, Särkinen T. (2019) Dichotomous keys to the species of Solanum L. (Solanaceae) in continental Africa, Madagascar (incl. the islands of Réunion, the Comoros and the Seychelles), Macaronesia, and the Cape Verde Islands. PhytoKeys (in press). Abstract. Solanum L. (Solanaceae) is one of the largest genera of angiosperms and presents difficulties in identification due to lack of regional keys to all groups. Here we provide keys to all 135 species of Solanum native and naturalised in Africa (as defined by World Geographical Scheme for Recording Plant Distributions): continental Africa, Madagascar (incl. the islands of Réunion, the Comoros and the Seychelles), Macaronesia, and the Cape Verde Islands. Some of these have previously been published in the context of monographic works, but here we include all taxa. The paper is designed to be used in conjunction with the web resource Solanaceae Source (www.solanaceaesource.org) and hyperlinks provide access to online descriptions, synonymy and images (where available) of each species. All taxa treated and specimens seen are included in searchable Supplementary materials files (also provided on NHM Data Portal).
DOI: 10.5519/0025128
title: Centipede venom evolution

description: These are 6 assembled venom gland transcriptomes from 5 species of centipedes. They are made available as supplementary material that is part of the following paper: Jenner, R. A., von Reumont, B. M., Campbell, L. I., Undheim, E. A. B. 2019. Parallel evolution of complex centipede venoms revealed by comparative proteotranscriptomic analyses. Molecular Biology and Evolution... The paper is accessible via this link: DOI: 10.1093/molbev/msz181
DOI: 10.5519/0095579
title: Temperature-body size responses in insects: a case study of British Odonata

description: 1. Body size is highly correlated with physiological traits, fitness, and trophic interactions. These traits are subject to change if there are widespread reductions of body size with warming temperatures, which is suggested as one of the “universal” ecological responses to climate change. However, general patterns of body size response to temperature in insects have not yet emerged. 2. To address this knowledge gap, we paired the wing length (as a proxy for body size) of 5,331 museum specimens of 14 species of British Odonata with historical temperature data. Three sets of analyses were performed 1) a regression analysis to test for a relationship between wing length and mean seasonal temperature within species and subsequent comparisons across species and suborders, 2) an investigation of whether the body size of species has an effect on sensitivity to warming temperature and, 3) a linear-mixed effects model to investigate factors that potentially affect temperature-size response. 3. The regression analysis indicated that wing length is negatively correlated with mean seasonal temperatures for Zygoptera, while, Anisoptera showed no significant correlation with temperature. 4. There is a significant decline in wing length of all Zygoptera (but not Anisoptera) with collection date, suggesting that individuals emerging later in the season are smaller. 5. Life-cycle type was not important for predicting wing length-temperature responses, whereas sex, species and suborder were indicated as important factors affecting the magnitude of temperature-size responses in Odonata. 6. Overall, wing lengths of Zygoptera are more sensitive to temperature and collection date than Anisoptera.
DOI: 10.5517/ccdc.csd.cc236f92
title: CCDC 1942593: Experimental Crystal Structure Determination

description: Related Article: James A. Rossi-Ashton, Aimee K. Clarke, James R. Donald, Chao Zheng, Richard J. K. Taylor, William P. Unsworth, Shu-Li You|2020|Angew.Chem.,Int.Ed.|59|7598|doi:10.1002/anie.202001956
DOI: 10.5519/0091362
title: Intraspecific variation in harbour porpoise cochleae

description: Data from paper **Intraspecific variation in harbour porpoise (** *Phocoena phocoena* **) cochleae and its implications for comparative studies across odontocetes.** &gt; Martins MCI, Park T, Racicot R, Cooper N. 2020. Intraspecific variation in the cochleae of harbour porpoises *Phocoena phocoena* and its implications for comparative studies across odontocetes. PeerJ 8:e8916 https://doi.org/10.7717/peerj.8916 The analyses require the two tidied datasets `odontocete-data-landmarks.csv` and `odontocete-data-linear.csv`. Raw data sources used to build these are `cochlea-measurements.csv`, `curves.csv`, `echo-metadata.csv` and landmark data for each species which is either provided here for all *Phocoena phocoena* specimens, or can be found at https://doi.org/10.5519/0082968 for other odontocetes. If you use this larger dataset of landmarks please cite: &gt; Travis Park, Bastien Mennecart, Loïc Costeur, Camille Grohé, Natalie Cooper (2018). Dataset: Convergent evolution in toothed whale cochleae. Natural History Museum Data Portal (data.nhm.ac.uk). https://doi.org/10.5519/0082968. More details can be found at https://github.com/nhcooper123/intraspecific-porpoise.
DOI: 10.5517/ccdc.csd.cc23th7p
title: CCDC 1960912: Experimental Crystal Structure Determination

description: Related Article: Qing-Hua Li, Dingding Gao, Cheng-Yu He, Qi Liao, Yun-Xuan Tan, Yu-Hui Wang, Rui Ding, Guo-Qiang Lin, Ping Tian|2020|Cell Reports Physical Science|1|100222|doi:10.1016/j.xcrp.2020.100222
DOI: 10.5517/ccdc.csd.cc23thct
title: CCDC 1960916: Experimental Crystal Structure Determination

description: Related Article: Qing-Hua Li, Dingding Gao, Cheng-Yu He, Qi Liao, Yun-Xuan Tan, Yu-Hui Wang, Rui Ding, Guo-Qiang Lin, Ping Tian|2020|Cell Reports Physical Science|1|100222|doi:10.1016/j.xcrp.2020.100222
DOI: 10.5517/ccdc.csd.cc23thjz
title: CCDC 1960921: Experimental Crystal Structure Determination

description: Related Article: Qing-Hua Li, Dingding Gao, Cheng-Yu He, Qi Liao, Yun-Xuan Tan, Yu-Hui Wang, Rui Ding, Guo-Qiang Lin, Ping Tian|2020|Cell Reports Physical Science|1|100222|doi:10.1016/j.xcrp.2020.100222
DOI: 10.5517/ccdc.csd.cc23thk0
title: CCDC 1960922: Experimental Crystal Structure Determination

description: Related Article: Qing-Hua Li, Dingding Gao, Cheng-Yu He, Qi Liao, Yun-Xuan Tan, Yu-Hui Wang, Rui Ding, Guo-Qiang Lin, Ping Tian|2020|Cell Reports Physical Science|1|100222|doi:10.1016/j.xcrp.2020.100222
DOI: 10.5517/ccdc.csd.cc23thl1
title: CCDC 1960923: Experimental Crystal Structure Determination

description: Related Article: Qing-Hua Li, Dingding Gao, Cheng-Yu He, Qi Liao, Yun-Xuan Tan, Yu-Hui Wang, Rui Ding, Guo-Qiang Lin, Ping Tian|2020|Cell Reports Physical Science|1|100222|doi:10.1016/j.xcrp.2020.100222
DOI: 10.5519/0073006
title: Defra ODA Legumes Project

description: The Defra ODA Legumes Project comprises the records of all herbarium sheet specimens of _Dalbergia_ and _Pterocarpus_, and selected specimens from the subtribe Phaseolinae, housed in the general herbarium at the Natural History Museum, London at the time of project completion (March 2019). The collection was digitised with a mandate to create and share, via the Global Biodiversity Information Facility (GBIF), a dataset of 10,000 herbarium specimens (images and metadata) to be used in scientific research into food security and timber production in ODA listed countries. In order to deliver the 10k specimen target, an additional 24 Genera housed in adjacent cabinets were imaged (including _Cajanus, Bolusafra, Fagelia, Dunbaria, Atylosia, Baukea, Endomallus, Paracalyx, Pitcheria, Rhynchosia, Eriosema, Carrissoa, Flemingia, Dalbergiella, Phylloxylon, Cyclolobium, Machaerium, Paramachaerium, Tipuana, Vatairea, Vataireopsis, Platypodium, Centrolobium_ and _Coroya_). Each specimen record has been published with an image capturing the herbarium sheet with any associated labels, and an inventory record created via that specimen’s unique identifier (barcode), taxon information, and geographical region. Some specimens will have additional images capturing the reverse side of the sheet, while a subsection will have additional data transcribed from the labels (collector, collection date, and locality). The data resource generated by the project is available using the link. Please search for the relevant taxa. The collection was digitised as part of the Museum's Digital Collections Programme, and the Defra-funded project “Supporting research in food security and timber management in tropical ODA listed countries” in collaboration with Royal Botanic Garden Edinburgh, and Royal Botanic Gardens, Kew.
DOI: 10.5517/ccdc.csd.cc245kpl
title: CCDC 1971559: Experimental Crystal Structure Determination

description: Related Article: Timo Trageser, Michael Bolte, Hans-Wolfram Lerner, Matthias Wagner|2020|Angew.Chem.,Int.Ed.|59|7726|doi:10.1002/anie.202000292
DOI: 10.5517/ccdc.csd.cc245kqm
title: CCDC 1971560: Experimental Crystal Structure Determination

description: Related Article: Timo Trageser, Michael Bolte, Hans-Wolfram Lerner, Matthias Wagner|2020|Angew.Chem.,Int.Ed.|59|7726|doi:10.1002/anie.202000292
DOI: 10.5517/ccdc.csd.cc245krn
title: CCDC 1971561: Experimental Crystal Structure Determination

description: Related Article: Timo Trageser, Michael Bolte, Hans-Wolfram Lerner, Matthias Wagner|2020|Angew.Chem.,Int.Ed.|59|7726|doi:10.1002/anie.202000292
DOI: 10.5517/ccdc.csd.cc245ksp
title: CCDC 1971562: Experimental Crystal Structure Determination

description: Related Article: Timo Trageser, Michael Bolte, Hans-Wolfram Lerner, Matthias Wagner|2020|Angew.Chem.,Int.Ed.|59|7726|doi:10.1002/anie.202000292
DOI: 10.5519/0011950
title: UK Georeferenced Master Sites iCollections Project

description: This Natural History Museums (NHM) digitisation project has produced 7217 georeferenced master sites representing the collection localities for approx., 500,000 NHM Lepitoptera specimens based on label transcriptions. The data set contains the following information; Continent, Country, ProvinceStateTerritory, DistrictCountyShire, Precise Location, Island Group, Island Name, Sea Gulf, Latitude, Longitude, GeoreferenceExtent Kms, Department. This structured file aims to provide a clear repeatable locality classification and thus avoid data duplication. Specific confidence limits for the data can be inferred from the GeoreferenceExtent field which gives a numeric approximation for the accuracy of the georeferenced master site. The georeferencing process aimed to rationalise and to make accurate master site records. This process specifically targets avoiding creating multiple sites records for the same location. To explain this further we might have two different sites that are the same place, one is spelt differently to the other, Eastbourne or eastborne. The Georeferencing and transcription process allows us to merge the specific site records (after the image label and has been looked at, to see if they are the same location), into one master site location and to use Google Maps to define a calculated centroid for Eastbourne and an accuracy assessment of the locality data, which equates to a radii covering the city bounds of Easbourne (as we do not know where the specimen was collected within Eastbourne, and can only rely on the data provided by the label, therefore Eastbourne becomes the master site record and eastborne is assigned to the Master site record, thus avoiding duplication of data).
DOI: 10.5519/0028430
title: Charophytes of Britain and Ireland

description: Charophytes, also known as stoneworts, are a group of large, multicelluar green algae that live in a variety of freshwater and brackish habitats. Charophytes play a significant role in aquatic ecosystems as early colonisers and habitat providers for a variety of organisms. They can be indicators of good water quality and different species have different environmental requirements (e.g. temperature, salinity). The presence of a species can be used to infer ecological characteristics of water bodies and habitats. The Natural History Museum, London, holds a collection of &gt;20,000 specimens of charophytes, among which there are approximately 5,000 from UK and Ireland. The majority of specimens were collected between c.1890 and c.1920 (during the hey-day of amateur botanical collecting and botanical clubs), although there are significant earlier records and many later specimens of different species. The collection includes herbarium sheet, fluid-preserved, microscope slides and oospore material. It is a comprehensive collection, including all the species and varieties that have been collected in the UK and Ireland. This dataset provides a complete catalogue of all the British and Irish herbarium sheet material in the Charophyte collection. For each specimen details of the identification, collector, date and mapped locality are provided. Many of these specimens have images associated with them, such as a photograph of the herbarium sheet or Scanning Electron Microscope images of the oospores.
DOI: 10.5519/0022377
title: 3D laser scan of NHM PV R 9372 Palaeosauropus sp.footprints

description: 3D laser scan of NHM PV R 9372 Palaeosauropus sp.footprints
DOI: 10.5517/ccdc.csd.cc25503h
title: CCDC 2000805: Experimental Crystal Structure Determination

description: Related Article: Yanbin Zhang, Ying He, Lukasz Wojtas, Xiaodong Shi, Hao Guo|2020|Cell Reports Physical Science|1|100211|doi:10.1016/j.xcrp.2020.100211
DOI: 10.5519/0003327
title: Molecular circumscription of new Gyrocotyle species from multiple, deep-sea Chimaeriformes in the North Atlantic

description: Chimaeras, or ratfishes, are the only extant group of holocephalan fishes and are the sole host group of gyrocotylidean cestodes, which represent a sister group of the true tapeworms (Eucestoda). These unique, non-segmented cestodes have been known since the 1850s and multiple species and genera have been erected despite a general agreement that the delineation of species on the basis of morphology is effectively impossible. Thus in the absence of molecular studies, the validity of gyrocotylid taxa and their specific host associations remain highly speculative. Here we report the presence of Gyrocotyle species from rarely-caught deep-sea chimaera species collected in the northeastern Atlantic, and describe two new species: G. haffii n. sp. from the bent-nose chimaera, Harriota raleighana Goode & Bean and G. discoveryi n. sp. from the large-eyed rabbit fish, Hydrolagus mirabilis (Collett). Nuclear ribosomal sequence data were generated for individual parasites taken from different host species collected on different dates and from different localities and were combined with sequences previously published. Phylogenetic analyses support the recognition of independent lineages and clusters, indicative of species, but were indecisive in recovering the root of the ingroup in analyses including eucestode, outgroup taxa. The molecular data reveal variation not reflected in their morphology and point to a complex picture of genetic divergences shaped by both isolation and migration in deep-sea environments.
DOI: 10.5517/ccdc.csd.cc25s606
title: CCDC 2019247: Experimental Crystal Structure Determination

description: Related Article: Giorgio Mercuri, Marco Moroni, Andrea Fermi, Giacomo Bergamini, Simona Galli, Giuliano Giambastiani, Andrea Rossin|2020|Inorg.Chem.|59|15832|doi:10.1021/acs.inorgchem.0c02297
DOI: 10.5517/ccdc.csd.cc25tkdz
title: CCDC 2020561: Experimental Crystal Structure Determination

description: Related Article: Giorgio Mercuri, Marco Moroni, Andrea Fermi, Giacomo Bergamini, Simona Galli, Giuliano Giambastiani, Andrea Rossin|2020|Inorg.Chem.|59|15832|doi:10.1021/acs.inorgchem.0c02297
DOI: 10.5517/ccdc.csd.cc25tkf0
title: CCDC 2020562: Experimental Crystal Structure Determination

description: Related Article: Giorgio Mercuri, Marco Moroni, Andrea Fermi, Giacomo Bergamini, Simona Galli, Giuliano Giambastiani, Andrea Rossin|2020|Inorg.Chem.|59|15832|doi:10.1021/acs.inorgchem.0c02297
DOI: 10.5519/0082541
title: Georeferenced UK social wasps

description: This dataset is a subset of DOI: 10.5519/qd.tdi9zagc. This dataset contains all UK common wasp (Vespula vulgaris, Linnaeus 1758), German wasp (Vespula germanica, Fabricius, 1793) and European hornet (Vespa crabro, Linnaeus 1758) specimens held by the NHM (as of July 2018) and all specimens have been georeferenced (for protocol, see Blagoderov et al., 2017; DOI: 10.3897/BDJ.5.e19893).
DOI: 10.5517/ccdc.csd.cc25tkg1
title: CCDC 2020563: Experimental Crystal Structure Determination

description: Related Article: Giorgio Mercuri, Marco Moroni, Andrea Fermi, Giacomo Bergamini, Simona Galli, Giuliano Giambastiani, Andrea Rossin|2020|Inorg.Chem.|59|15832|doi:10.1021/acs.inorgchem.0c02297
DOI: 10.5519/0055095
title: Historical wasp occupancies: model outputs

description: This dataset contains model output for: &gt; Jönsson, G. M., Broad, G. R., Sumner, S. and Isaac, N. J. B. (2020). A century of social wasp occupancy trends from natural history collections: spatiotemporal resolutions have little effect on model performance. Unpublished manucript. These model outputs are from Bayesian occupancy models differing in spatiotemporal resolution for each of *Vespula vulgaris*, *Vespula germanica* and *Vespa crabro*in England from 1900 to 2016. All models are based on an integrated dataset of occurrence records from the Bees, Wasps and Ants Recording Society (BWARS) and specimens from the Natural History Museum. All models were run using the R package sparta (August, T., Powney, G., Outhwaite, C. L., Harrower, C., Hill, M., Hatfield, J., … Isaac, N. (2019). sparta: Trend Analysis for Unstructured Data.).
DOI: 10.5517/ccdc.csd.cc25tkh2
title: CCDC 2020564: Experimental Crystal Structure Determination

description: Related Article: Giorgio Mercuri, Marco Moroni, Andrea Fermi, Giacomo Bergamini, Simona Galli, Giuliano Giambastiani, Andrea Rossin|2020|Inorg.Chem.|59|15832|doi:10.1021/acs.inorgchem.0c02297
DOI: 10.5517/ccdc.csd.cc25ww21
title: CCDC 2022783: Experimental Crystal Structure Determination

description: Related Article: Xiang-Ling Lin, Bin Chen, You-Ren Huang, Kai-Yue Song, Pan-Ke Zhou, Lu-Lu Zong, Hao-Hong Li, Zhi-Rong Chen, Rong Jiang|2020|Inorg.Chem.Front.|7|4477|doi:10.1039/D0QI00995D