cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17427557
title: Data file S5. from Differential word expression analyses highlight plague dynamics during the second pandemic

description: All French words raw data generated by “nested” Deseq2 analysis.
DOI: 10.6084/m9.figshare.17427557.v1
title: Data file S5. from Differential word expression analyses highlight plague dynamics during the second pandemic

description: All French words raw data generated by “nested” Deseq2 analysis.
DOI: 10.6084/m9.figshare.17427545.v1
title: Data file S2. from Differential word expression analyses highlight plague dynamics during the second pandemic

description: Plague-unrelated French texts dating from the same historical period of the Great Plague of Marseille which were used as controls.
DOI: 10.6084/m9.figshare.17427560.v1
title: Data file S3. from Differential word expression analyses highlight plague dynamics during the second pandemic

description: Research on the second plague pandemic that swept over Europe from the fourteenth to nineteenth centuries mainly relies on the exegesis of contemporary texts and is prone to interpretive bias. By leveraging certain bioinformatic tools routinely used in biology, we developed a quantitative lexicography of 32 texts describing two major plague outbreaks, using contemporary plague-unrelated texts as negative controls. Nested, network and category analyses of a 207-word pan-lexicome, comprising overrepresented terms in plague-related texts, indicated that ‘buboes' and ‘carbuncles' are words that were significantly associated with the plague and signalled an ectoparasite-borne plague. Moreover, plague-related words were associated with the terms ‘merchandise’, ‘movable’, ‘tatters', ‘bed’ and ‘clothes'. Analysing ancient texts using the method reported in this paper can certify plague-related historical records and indicate the particularities of each plague outbreak, which can inform on the potential sources for the causative <i>Yersinia pestis</i>.
DOI: 10.6084/m9.figshare.17427560
title: Data file S3. from Differential word expression analyses highlight plague dynamics during the second pandemic

description: Research on the second plague pandemic that swept over Europe from the fourteenth to nineteenth centuries mainly relies on the exegesis of contemporary texts and is prone to interpretive bias. By leveraging certain bioinformatic tools routinely used in biology, we developed a quantitative lexicography of 32 texts describing two major plague outbreaks, using contemporary plague-unrelated texts as negative controls. Nested, network and category analyses of a 207-word pan-lexicome, comprising overrepresented terms in plague-related texts, indicated that ‘buboes' and ‘carbuncles' are words that were significantly associated with the plague and signalled an ectoparasite-borne plague. Moreover, plague-related words were associated with the terms ‘merchandise’, ‘movable’, ‘tatters', ‘bed’ and ‘clothes'. Analysing ancient texts using the method reported in this paper can certify plague-related historical records and indicate the particularities of each plague outbreak, which can inform on the potential sources for the causative <i>Yersinia pestis</i>.
DOI: 10.6084/m9.figshare.17427563
title: Data file S7. from Differential word expression analyses highlight plague dynamics during the second pandemic

description: Plague-unrelated Italian texts dating from the same historical period of the plague epidemic in Northern Italy which were used as controls.
DOI: 10.6084/m9.figshare.17427563.v1
title: Data file S7. from Differential word expression analyses highlight plague dynamics during the second pandemic

description: Plague-unrelated Italian texts dating from the same historical period of the plague epidemic in Northern Italy which were used as controls.
DOI: 10.5281/zenodo.5816672
title: Data, code, and metadata for: Daily torpor reduces the energetic consequences of microhabitat selection for a widespread bat

description: This repository contains all data, code, and metadata required to reproduce the results detailed in "Daily torpor reduces the energetic consequences of microhabitat selection for a widespread bat" by Alston et al.
DOI: 10.5281/zenodo.5816660
title: Data, code, and metadata for: Daily torpor reduces the energetic consequences of microhabitat selection for a widespread bat

description: This repository contains all data, code, and metadata required to reproduce the results detailed in "Daily torpor reduces the energetic consequences of microhabitat selection for a widespread bat" by Alston et al.
DOI: 10.13016/iwmd-dvux
title: Detection and Recognition of Asynchronous Auditory/Visual Speech: Effects of Age, Hearing Loss, and Talker Accent

description: This investigation examined age-related differences in auditory-visual (AV) integration as reflected on perceptual judgments of temporally misaligned AV English sentences spoken by native English and native Spanish talkers. In the detection task, it was expected that slowed auditory temporal processing of older participants, relative to younger participants, would be manifest as a shift in the range over which participants would judge asynchronous stimuli as synchronous (referred to as the “AV simultaneity window”). The older participants were also expected to exhibit greater declines in speech recognition for asynchronous AV stimuli than younger participants. Talker accent was hypothesized to influence listener performance, with older listeners exhibiting a greater narrowing of the AV simultaneity window and much poorer recognition of asynchronous AV foreign-accented speech compared to younger listeners. Participant groups included younger and older participants with normal hearing and older participants with hearing loss. Stimuli were video recordings of sentences produced by native English and native Spanish talkers. The video recordings were altered in 50 ms steps by delaying either the audio or video onset. Participants performed a detection task in which the judged whether the sentences were synchronous or asynchronous, and performed a recognition task for multiple synchronous and asynchronous conditions. Both the detection and recognition tasks were conducted at the individualized signal-to-noise ratio (SNR) corresponding to approximately 70% correct speech recognition performance for synchronous AV sentences. Older listeners with and without hearing loss generally showed wider AV simultaneity windows than younger listeners, possibly reflecting slowed auditory temporal processing in auditory lead conditions and reduced sensitivity to asynchrony in auditory lag conditions. However, older and younger listeners were affected similarly by misalignment of auditory and visual signal onsets on the speech recognition task. This suggests that older listeners are negatively impacted by temporal misalignments for speech recognition, even when they do not notice that the stimuli are asynchronous. Overall, the findings show that when listener performance is equated for simultaneous AV speech signals, age effects are apparent in detection judgments but not in recognition of asynchronous speech.
DOI: 10.5281/zenodo.4587649
title: Mud volcano monoculture transcriptome (anya project)

description: Transcriptome of mud volcano monoculture. Culture was grown on phenanthrene and pyrene substrate.
DOI: 10.5281/zenodo.4587648
title: Mud volcano monoculture transcriptome (anya project)

description: Transcriptome of mud volcano monoculture. Culture was grown on phenanthrene and pyrene substrate.
DOI: 10.34740/kaggle/dsv/3002825
title: Omicron daily cases by country (COVID-19 variant)
DOI: 10.5281/zenodo.5816680
title: Dataset - Dissolved organic matter sources and processing in the endorheic Lake Nam Co catchment (Tibet) as assessed by ultra-high resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS)

description: Disclaimer 2022-01-04: Associated full text in preparation
description: Dataset for pre-publication full text Please contact: p.maurischat@gmx.de for data sharing
DOI: 10.5281/zenodo.5816679
title: Dataset - Dissolved organic matter sources and processing in the endorheic Lake Nam Co catchment (Tibet) as assessed by ultra-high resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS)

description: Disclaimer 2022-01-04: Associated full text in preparation
description: Dataset for pre-publication full text Please contact: p.maurischat@gmx.de for data sharing
DOI: 10.5281/zenodo.5816667
title: Dataset - A multiparametrical analysis of spatiotemporal dissolved organic matter variation in three catchments of Lake Nam Co, Tibetan Plateau

description: The multiparametrical dataset employed in the upcoming reserach contribution of spatiotemporal dissolved organic matter variation in three catchments of Lake Nam Co, Tibetan Plateau Disclaimer: 04.01.2022, associated full text in preparation by authors
description: Not open until publication: Datashare requests can be directed to: p.maurischat@gmx.de
DOI: 10.5281/zenodo.5816666
title: Dataset - A multiparametrical analysis of spatiotemporal dissolved organic matter variation in three catchments of Lake Nam Co, Tibetan Plateau

description: The multiparametrical dataset employed in the upcoming reserach contribution of spatiotemporal dissolved organic matter variation in three catchments of Lake Nam Co, Tibetan Plateau Disclaimer: 04.01.2022, associated full text in preparation by authors
description: Not open until publication: Datashare requests can be directed to: p.maurischat@gmx.de
DOI: 10.6084/m9.figshare.17149094
title: Ogawa & Matsuyama: behavioral results

description: Accuracy and reaction time (RT) for VPT and ToM tasks.
DOI: 10.6084/m9.figshare.17149094.v1
title: Ogawa & Matsuyama: behavioral results

description: Accuracy and reaction time (RT) for VPT and ToM tasks.
DOI: 10.6084/m9.figshare.17141867
title: Ogawa & Matsuyama: fMRI VPT & ToM MNI coordinates

description: MNI coordinates of the individual participants
DOI: 10.6084/m9.figshare.17141867.v1
title: Ogawa & Matsuyama: fMRI VPT & ToM MNI coordinates

description: MNI coordinates of the individual participants
DOI: 10.48370/ofd/vm5xeg
title: Pucciniastrum circaeae (Winter) Spegazzini ex De Toni, 3795

description: Fungarium Mikromycetes
DOI: 10.48370/ofd/wksgvy
title: Pucciniastrum circaeae (Winter) Spegazzini ex De Toni, 219

description: Fungarium Mikromycetes
DOI: 10.17033/data.00000279
title: Influences of Nationality and National Identification on Perceived Dangerousness of COVID-19 Variants and Perceived Effectiveness of COVID-19 Vaccines: A Study of UK and Portuguese Samples

description: During the COVID-19 pandemic, both variants of the virus that causes the disease and vaccines developed to combat it have been identified with nationalities. Both social identity theory and identity process theory would predict that this would initiate intergroup differentiation processes aimed at optimizing ingroup value and personal identity enhancement. Our study examined whether people’s nationality and level of national identification influence their perception of dangerousness of variants and effectiveness of vaccines. We compared data collected by online survey in March 2021 from the UK (which was associated with both a variant and a vaccine) and Portugal (which was associated with neither). The Portuguese rated variants overall as more dangerous than did the UK sample. The Chinese variant was rated by both samples as the least dangerous and the UK sample rated the British variant as less dangerous than did the Portuguese. Higher national identification in the UK sample was associated with differentiating more between the British variant and the South African variant and differentiating it less from the Chinese variant. The UK sample rated the effectiveness of the British vaccine higher than did the Portuguese. They also evaluated it as more effective than the American, Chinese and Indian vaccines. In both samples, higher national identification was associated with lower ratings of effectiveness for vaccines originating in China or India. Our study suggests that identity processes associated with national identification do influence perceptions of vaccines and variants. This has significant practice and policy implications. Social representations of variants and vaccines in nationalistic terms can have complex and unexpected consequences.
description: Survey
DOI: 10.15468/yanj3z
title: The origin of Oxalis corniculata L.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Groom, Quentin J., Van der Straeten, Jan, Hoste, Ivan (2019): The origin of Oxalis corniculata L. PeerJ 7 (2): 1-19, DOI: 10.7717/peerj.6384, URL: http://dx.doi.org/10.7717/peerj.6384
DOI: 10.6084/m9.figshare.17815700
title: Data

description: The Data and Materials of Structural decomposition Analysis of carbon dioxide Emission intensity in China.
DOI: 10.5281/zenodo.5816749
title: Dataset of "Nonlinear Wave-Particle Interaction is Suppressed by Realistic Properties of Chorus Waves"

description: Dataset of "Nonlinear Wave-Particle Interaction is Suppressed by Realistic Properties of Chorus Waves", including waveforms of the input PIC-generated chorus wave field (WF_{PIC}) recorded at certain magnetic latitudes, and the evolution of electrons' equatorial pitch angle with magnetic latitude.
DOI: 10.5281/zenodo.5497218
title: Dataset of "Nonlinear Wave-Particle Interaction is Suppressed by Realistic Properties of Chorus Waves"

description: Dataset of "Nonlinear Wave-Particle Interaction is Suppressed by Realistic Properties of Chorus Waves", including waveforms of the input PIC-generated chorus wave field (WF_{PIC}) recorded at certain magnetic latitudes, and the evolution of electrons' equatorial pitch angle with magnetic latitude.
DOI: 10.5281/zenodo.5816748
title: Flemish online news (15 sources)

description: From 2017 to 2021, online news media were scraped to provide a real-time collection of digital news. Fifteen popular and diverse Flemish news sources were selected for this purpose, resulting in a vast collection of nearly 1.5 million articles in four years. The data format is JSON-lines (one JSON object per line for lazy loading). The fifteen sources are: No. Name URL Type 1. Het Laatste Nieuws hln.be Newspaper 2. Het Nieuwsblad nieuwsblad.be Newspaper 3. VRT vrt.be Public broadcasting 4. De Standaard standaard.be Newspaper 5. Gazet van Antwerpen gva.be Regional Newspaper 6. De Morgen demorgen.be Newspaper 7. De Tijd tijd.be Financial newspaper 8. Metro nl.metrotime.be Newspaper 9. Knack knack.be Magazine 10. Trends trends.knack.be Financial magazine 11. De Zondag dezondag.be Weekly newspaper 12. Humo humo.be Magazine 13. Het Belang van Limburg hbvl.be Regional Newspaper 14. Krant van West-Vlaanderen kw.be Regional Newspaper 15. 't Pallieterke palnws.be Magazine
DOI: 10.5281/zenodo.5816747
title: Flemish online news (15 sources)

description: From 2017 to 2021, online news media were scraped to provide a real-time collection of digital news. Fifteen popular and diverse Flemish news sources were selected for this purpose, resulting in a vast collection of nearly 1.5 million articles in four years. The data format is JSON-lines (one JSON object per line for lazy loading). The fifteen sources are: No. Name URL Type 1. Het Laatste Nieuws hln.be Newspaper 2. Het Nieuwsblad nieuwsblad.be Newspaper 3. VRT vrt.be Public broadcasting 4. De Standaard standaard.be Newspaper 5. Gazet van Antwerpen gva.be Regional Newspaper 6. De Morgen demorgen.be Newspaper 7. De Tijd tijd.be Financial newspaper 8. Metro nl.metrotime.be Newspaper 9. Knack knack.be Magazine 10. Trends trends.knack.be Financial magazine 11. De Zondag dezondag.be Weekly newspaper 12. Humo humo.be Magazine 13. Het Belang van Limburg hbvl.be Regional Newspaper 14. Krant van West-Vlaanderen kw.be Regional Newspaper 15. 't Pallieterke palnws.be Magazine
DOI: 10.6084/m9.figshare.17816324
title: Supplementary Material for: Novel Cranial Imaging Findings and a Splice-Site Variant in a Patient with Tyrosinemia Type III, and a Summary of Published Cases

description: Tyrosinemia type III is an extremely rare autosomal recessive disease, with only 19 patients yet reported. It is caused by a deficiency of the 4-hydroxyphenylpyruvate dioxygenase enzyme, resulting from biallelic mutations in the <i>HPD</i> gene. Although the clinical spectrum of the disease is not fully known, most patients present with neurodevelopmental symptoms. We report on a 20-month-old patient who was investigated due to developmental delay and dysmorphic features. The girl had a novel splice-site mutation in the <i>HPD</i> gene and ventriculomegaly in cranial imaging, which was not previously associated with tyrosinemia type III. Our patient had mild subjective improvement in social skills and language development after dietary therapy was started and her tyrosine levels decreased. We also summarize clinical, biochemical, and genetic findings of previously published patients with biallelic <i>HPD</i> mutations.
DOI: 10.5281/zenodo.5816833
title: InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning

description: LTR retrotransposons are mobile elements that make up the major part of most plant genomes. Their identification and annotation via bioinformatics approaches represent a major challenge in the era of massive plant genome sequencing. In addition to their involvement in the variation in genome size, these elements are also associated in the function and structure of different chromosomal regions and in the alteration of the function of coding regions, among others. Several plant retrotransposon sequence databases of LTR retrotransposons are available with public access such as PGSB, RepetDB or restricted access such as Repbase. Although they are useful for approaches to identify LTR-RTs in new genomes by similarity, the elements of these databases are not classified down to the lineage/family level. with great depth. Here, we present InpactorDB a semi-curated dataset composed of 130,511 elements from 195 plant genomes (belonging to 108 plant species), classified down to the lineage level. This data set has been used to train two deep neural networks (one fully connected and one convolutional) for fast classification of elements. Used in lineage-level classification approaches, we obtain a score above 98% of F1-score, precision and recall. In order to classify elements of the ‘LTR_STRUC’ and ‘EDTA’ datasets, we used the methodology proposed by Inpactor, which uses homology-based strategy with known coding domains belonging to LTR-RTs. We utilized the RexDB domain library as reference. LTR-RTs were classified into superfamilies, Gypsy (RLG) or Copia (RLC) and sub-classified into lineages according to the similarities of five different amino acid reference domains (GAG, AP, RT, RNAseH, and INT domains). In addition, we applied filters to remove keep only intact elements: 1) to remove predicted elements with domains from two different superfamilies (i.e. Gypsy and Copia), 2) or elements with domains belonging to two or more different lineages, 3) to remove elements with lengths different than those reported by Gypsy Database (GyDB) with a tolerance of 20%, 4) to delete incomplete elements which has less than three identified domains, and 5) to remove elements with insertions of TE class II (reported in Repbase). The final non-redundant version of InpactorDB consists of 67,305 LTR retrotransposons. Both redundant and non-redundant versions of InpactorDB are available in Fasta format in which sequences have identifiers with the following general Identification code: &gt;Superfamily-Lineage-plant_family-specie-source-length-ID, Where Superfamily can is either RLC (for Copia) or RLG (for Gypsy), Lineage/family follows following the RexDB nomenclature, source (can be Repbase, RepetDB, PGSB, LTR_STRUC or EDTA datasets), length, and ID, is a unique number which identify each element inside the InpactorDB.
DOI: 10.21954/ou.rd.17206577
title: PhD Thesis Carla Gomez - data Chapter 5 - raw reads 16S rRNA gene sequencing

description: Raw 16S rRNA sequencing data in FASTq formatData used for the classification of bacterial groups in Chapter 5 of the PhD thesis 'Methane fluxes from wetlands trees: sources, sinks and microbial diversity' submitted in October 2021
DOI: 10.21954/ou.rd.17206577.v1
title: PhD Thesis Carla Gomez - data Chapter 5 - raw reads 16S rRNA gene sequencing

description: Raw 16S rRNA sequencing data in FASTq formatData used for the classification of bacterial groups in Chapter 5 of the PhD thesis 'Methane fluxes from wetlands trees: sources, sinks and microbial diversity' submitted in October 2021
DOI: 10.21954/ou.rd.17206298
title: PhD Thesis Carla Gomez - data Chapter 5 - classification based on the 16S rRNA gene sequencing

description: Bacterial classification based on the 16S rRNA gene sequencing used in Chapter 5 of the PhD thesis 'Methane fluxes from wetland trees: sources, sinks and microbial diversity' submitted October 2021
DOI: 10.21954/ou.rd.17206298.v1
title: PhD Thesis Carla Gomez - data Chapter 5 - classification based on the 16S rRNA gene sequencing

description: Bacterial classification based on the 16S rRNA gene sequencing used in Chapter 5 of the PhD thesis 'Methane fluxes from wetland trees: sources, sinks and microbial diversity' submitted October 2021
DOI: 10.21954/ou.rd.17206562
title: PhD Thesis Carla Gomez - data Chapter 3 - Gas concentrations used for flux calculation

description: <br>Data used in Chapter 3 of the PhD thesis 'Methane fluxes from wetland trees: sources, sinks and microbial diversity' submitted in October 2021Gas concentration as recorded with the portable gas analyser (UGGA) in real time. The highlighted cells in the excel files correspond to the gas concentrations while enclosing the tree/soil surface with the chamber.<br>
DOI: 10.21954/ou.rd.17206592
title: PhD Thesis Carla Gomez - data Chapter 5 - shotgun metagenomics - WGS

description: Classification of microbial groups based on shotgun metagenomics sequencing - data used in Chapter 5 of the PhD thesis 'Methane fluxes from wetland trees: sources, sinks and microbial diversity' submitted October 2021
DOI: 10.21954/ou.rd.17206592.v1
title: PhD Thesis Carla Gomez - data Chapter 5 - shotgun metagenomics - WGS

description: Classification of microbial groups based on shotgun metagenomics sequencing - data used in Chapter 5 of the PhD thesis 'Methane fluxes from wetland trees: sources, sinks and microbial diversity' submitted October 2021
DOI: 10.15161/oar.it/74384
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.25326/312
title: Surface heat fluxes - R/V Meteor - EUREC4A

description: Eddy-Covariance and bulk turbulent surface fluxes averaged over 30 min for sensible and latent heat collected at the bow (10 m over sea surface) and mast (35 m over sea surface) of the R/V Meteor during the EUREC4A field campaign.
DOI: 10.6084/m9.figshare.17819183
title: EMS_SwedenSpainCroAutSlo_2021-12-10.sav

description: Sweden, Croatia, Spain Austria and Slovenia
DOI: 10.6084/m9.figshare.17819183.v1
title: EMS_SwedenSpainCroAutSlo_2021-12-10.sav

description: Sweden, Croatia, Spain Austria and Slovenia
DOI: 10.21252/a5j4-4978
title: Dataset for Oksana Kehoe
DOI: 10.25721/tx4z-ee39
title: Fabrication du galoubet : derniers ajustages de la languette et du bec
DOI: 10.25721/0pdg-hj06
title: Fabrication du galoubet : derniers ajustages de la languette et du bec