cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/ph70-8n53
title: Neoplasm, malignant - Female, 30 - Tissue image [5250730010643751]

description: This is the histopathological image of THYROID GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 30Clinical description: Suspicion of thyroid neoplasm.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEOPLASMS, NOSDiagnosis: Neoplasm, malignantResult of the histopathological examination: Papillary thyroid microcarcinoma.Sample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: THYROID GLANDTissue: Thyroid, NOSType of staining: positive/HEStaining: Hematoxylin & eosinAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/ky2j-tt13
title: Neoplasm, malignant - Female, 70 - Tissue image [5250730010655691]

description: This is the histopathological image of THYROID GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 70Clinical description: Suspicion of thyroid neoplasm.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEOPLASMS, NOSDiagnosis: Neoplasm, malignantResult of the histopathological examination: Papillary thyroid carcinoma.Sample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: THYROID GLANDTissue: Thyroid, NOSType of staining: positive/HEStaining: Hematoxylin & eosinAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/0x5y-kt68
title: Neoplasm, malignant - Female, 30 - Tissue image [525073001064471]

description: This is the histopathological image of THYROID GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 30Clinical description: Suspicion of thyroid neoplasm.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEOPLASMS, NOSDiagnosis: Neoplasm, malignantResult of the histopathological examination: Papillary thyroid microcarcinoma.Sample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: THYROID GLANDTissue: Thyroid, NOSType of staining: positive/HEStaining: Hematoxylin & eosinAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/d4sw-an66
title: Hepatic fibrosis - Male, 53 - Tissue image [5250730010645551]

description: This is the histopathological image of LIVER AND INTRAHEPATIC BILE DUCTS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 53Clinical description: Liver fibrosis. Congenital haemochromatosis.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XI - Diseases of the digestive systemDiagnosis: Hepatic fibrosisResult of the histopathological examination: In the examined oligopyoptate (one partially fragmented section) fragments of the enlarged biliary spaces are usually present, containing a large number of inflammatory cells, mainly mononuclear. Within the above-mentioned enlarged spaces, there are features of pronounced fibrogenesis, characterized by intense portal and periportal fibrosis with the formation of portal-portal fibrous bridges, it is possible that also portal-central, with the presence of a single regenerative nodule. In some portal spaces accumulating elements of collagen connective tissue, there is a clear proliferation of bile ducts.
Large groups of enlarged hepatocytes are observed, especially those located near the portal spaces, depositing iron in the form of haemosiderin, and stimulated Borowicz-Kupffer cells accumulating hemosiderin.
In places, there are features of mixed steatosis of quite numerous hepatocytes, with a predominance of large droplets.

The microscopic image of the examined material indicates the process of intense fibrosis of on the base of congenital haemochromatosis, although coexistence of another liver pathology cannot be ruled out.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: LIVER AND INTRAHEPATIC BILE DUCTSTissue: LiverType of staining: positive/HCStaining: Gomori Silver Impregnation (Reticulum)Antibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/w6ra-kw60
title: Hepatic fibrosis - Female, 52 - Tissue image [5250730010647691]

description: This is the histopathological image of LIVER AND INTRAHEPATIC BILE DUCTS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 52Clinical description: Liver cirrhosis.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XI - Diseases of the digestive systemDiagnosis: Hepatic fibrosisResult of the histopathological examination: (Liver oligobiopsy in 2 sections, including 1 partially fragmented.)
More than half of the portal spaces are significantly or very significantly dilated, contain an abundant and very abundant number of mononuclear inflammatory cells, mainly lymphocytic, with an admixture of not very numerous eosinophils, separating fairly well from the lobule borderline; the remaining portal spaces were usually slightly widened. Within the most dilated portal spaces, lymph nodes forming, quite numerous HPCs-line cells differentiating into hepatocytes, and bile duct proliferation (well shown in IHC staining for CK7 and CK19) are visible; the basement membrane of some bile ducts is focally crossed by individual lymphocytic cells.
In the examined biopsy there are features of marked intensified periportal fibrosis with formation of incomplete fibrous bridges, and not too numerous but quite thick fibrous bridges of the portal-portal type and a single portal-central type bridge; there are also minor foci of intramedullary fibrosis.
In fever, not too many hepatocytes are found, showing the features of: cytoplasmic degeneration or intracellular bile stagnation, or glycogenic degeneration of the testes.
The microscopic image of the examined biopsy shows progressive fibrosis of the organ (without cirrhosis).
However, taking into account the morphological and clinical picture and the results of laboratory tests [positive anti-mitochondrial antibodies (AMA) in the blood serum], the onset of primary cirrhosis (PBC) cannot be ruled out.
IHC: SMA - numerous activated hepatic stellate cells;
Turnbull's blue (for the presence of Fe ++) - negative.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: LIVER AND INTRAHEPATIC BILE DUCTSTissue: LiverType of staining: positive/HEStaining: Hematoxylin & eosinAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/yjhx-hv87
title: Hepatic fibrosis - Female, 52 - Tissue image [5250730010642511]

description: This is the histopathological image of LIVER AND INTRAHEPATIC BILE DUCTS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 52Clinical description: Liver cirrhosis.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XI - Diseases of the digestive systemDiagnosis: Hepatic fibrosisResult of the histopathological examination: (Liver oligobiopsy in 2 sections, including 1 partially fragmented.)
More than half of the portal spaces are significantly or very significantly dilated, contain an abundant and very abundant number of mononuclear inflammatory cells, mainly lymphocytic, with an admixture of not very numerous eosinophils, separating fairly well from the lobule borderline; the remaining portal spaces were usually slightly widened. Within the most dilated portal spaces, lymph nodes forming, quite numerous HPCs-line cells differentiating into hepatocytes, and bile duct proliferation (well shown in IHC staining for CK7 and CK19) are visible; the basement membrane of some bile ducts is focally crossed by individual lymphocytic cells.
In the examined biopsy there are features of marked intensified periportal fibrosis with formation of incomplete fibrous bridges, and not too numerous but quite thick fibrous bridges of the portal-portal type and a single portal-central type bridge; there are also minor foci of intramedullary fibrosis.
In fever, not too many hepatocytes are found, showing the features of: cytoplasmic degeneration or intracellular bile stagnation, or glycogenic degeneration of the testes.
The microscopic image of the examined biopsy shows progressive fibrosis of the organ (without cirrhosis).
However, taking into account the morphological and clinical picture and the results of laboratory tests [positive anti-mitochondrial antibodies (AMA) in the blood serum], the onset of primary cirrhosis (PBC) cannot be ruled out.
IHC: SMA - numerous activated hepatic stellate cells;
Turnbull's blue (for the presence of Fe ++) - negative.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: LIVER AND INTRAHEPATIC BILE DUCTSTissue: LiverType of staining: positive/HCStaining: Gomori Silver Impregnation (Reticulum)Antibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/y4ra-t587
title: Hepatic fibrosis - Female, 52 - Tissue image [5250730010647331]

description: This is the histopathological image of LIVER AND INTRAHEPATIC BILE DUCTS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 52Clinical description: Liver cirrhosis.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XI - Diseases of the digestive systemDiagnosis: Hepatic fibrosisResult of the histopathological examination: (Liver oligobiopsy in 2 sections, including 1 partially fragmented.)
More than half of the portal spaces are significantly or very significantly dilated, contain an abundant and very abundant number of mononuclear inflammatory cells, mainly lymphocytic, with an admixture of not very numerous eosinophils, separating fairly well from the lobule borderline; the remaining portal spaces were usually slightly widened. Within the most dilated portal spaces, lymph nodes forming, quite numerous HPCs-line cells differentiating into hepatocytes, and bile duct proliferation (well shown in IHC staining for CK7 and CK19) are visible; the basement membrane of some bile ducts is focally crossed by individual lymphocytic cells.
In the examined biopsy there are features of marked intensified periportal fibrosis with formation of incomplete fibrous bridges, and not too numerous but quite thick fibrous bridges of the portal-portal type and a single portal-central type bridge; there are also minor foci of intramedullary fibrosis.
In fever, not too many hepatocytes are found, showing the features of: cytoplasmic degeneration or intracellular bile stagnation, or glycogenic degeneration of the testes.
The microscopic image of the examined biopsy shows progressive fibrosis of the organ (without cirrhosis).
However, taking into account the morphological and clinical picture and the results of laboratory tests [positive anti-mitochondrial antibodies (AMA) in the blood serum], the onset of primary cirrhosis (PBC) cannot be ruled out.
IHC: SMA - numerous activated hepatic stellate cells;
Turnbull's blue (for the presence of Fe ++) - negative.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: LIVER AND INTRAHEPATIC BILE DUCTSTissue: LiverType of staining: positive/HCStaining: P.A.S. (Periodic Acid and Schiff)Antibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.5281/zenodo.6338568
title: MRI acquisitions from 14 glioma patients

description: Every compressed folder contains 4 full brain images of a patient. The images are in DICOM format. The file 'patientinfo.png' contains a table with information for each patient. Images included: - Axial T1-weighted pre-contrast - Sagital FLAIR + BOLUS - Axial T2 PROPELLER after gadolinium injection - Axial T1-weighted after gadolinium injection
DOI: 10.5281/zenodo.6338567
title: MRI acquisitions from 14 glioma patients

description: Every compressed folder contains 4 full brain images of a patient. The images are in DICOM format. The file 'patientinfo.png' contains a table with information for each patient. Images included: - Axial T1-weighted pre-contrast - Sagital FLAIR + BOLUS - Axial T2 PROPELLER after gadolinium injection - Axial T1-weighted after gadolinium injection
DOI: 10.5517/ccdc.csd.cc23dcqm
title: CCDC 1948310: Experimental Crystal Structure Determination

description: Related Article: Anupama Ekbote, Shaikh M. Mobin, Rajneesh Misra|2020|J.Mater.Chem.C|8|3589|doi:10.1039/C9TC05192A
DOI: 10.34808/e3wt-tf28
title: Neoplasm, malignant - Female, 62 - Tissue image [5250730010657071]

description: This is the histopathological image of BRAIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 62Clinical description: CNS tumor.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEOPLASMS, NOSDiagnosis: Neoplasm, malignantResult of the histopathological examination: Bone trabeculae with features of sclerotization and pericellular fibrosis.
A cartilage lesion with features of nuclear atypia is visible. The morphological picture may correspond to a low-grade chondrosarcoma.
IHC: CK AE1/3 (-).Sample:Material: FFPECollecting method: Surgical specimenTopography: EYE, BRAIN AND OTHER PARTS OF CENTRAL NERVOUS SYSTEMOrgan: BRAINTissue: Temporal lobeType of staining: positive/IHCStaining: Not applicableAntibody: CK PAN (AE1/AE3)Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.5517/ccdc.csd.cc299bpn
title: CCDC 2124141: Experimental Crystal Structure Determination

description: Related Article: Desaboini Nageswara Rao, Xincai Ji, Stephen C. Miller|2022|Chemical Science|13|6081|doi:10.1039/D2SC01821G
DOI: 10.34808/bqnn-9m50
title: Hepatic fibrosis - Male, 53 - Tissue image [5250730010649291]

description: This is the histopathological image of LIVER AND INTRAHEPATIC BILE DUCTS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 53Clinical description: Liver fibrosis. Congenital haemochromatosis.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XI - Diseases of the digestive systemDiagnosis: Hepatic fibrosisResult of the histopathological examination: In the examined oligopyoptate (one partially fragmented section) fragments of the enlarged biliary spaces are usually present, containing a large number of inflammatory cells, mainly mononuclear. Within the above-mentioned enlarged spaces, there are features of pronounced fibrogenesis, characterized by intense portal and periportal fibrosis with the formation of portal-portal fibrous bridges, it is possible that also portal-central, with the presence of a single regenerative nodule. In some portal spaces accumulating elements of collagen connective tissue, there is a clear proliferation of bile ducts.
Large groups of enlarged hepatocytes are observed, especially those located near the portal spaces, depositing iron in the form of haemosiderin, and stimulated Borowicz-Kupffer cells accumulating hemosiderin.
In places, there are features of mixed steatosis of quite numerous hepatocytes, with a predominance of large droplets.

The microscopic image of the examined material indicates the process of intense fibrosis of on the base of congenital haemochromatosis, although coexistence of another liver pathology cannot be ruled out.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: LIVER AND INTRAHEPATIC BILE DUCTSTissue: LiverType of staining: positive/HEStaining: Hematoxylin & eosinAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.5517/ccdc.csd.cc2bmwwr
title: CCDC 2164075: Experimental Crystal Structure Determination

description: Related Article: Min Si, Jiaqi Yan, Yongzheng Ding, Hanmin Huang|2022|Org.Biomol.Chem.|20|3917|doi:10.1039/D2OB00623E
DOI: 10.6073/pasta/2a9aa618bf969def6ac934bfe84f2f14
title: Forest Transition Experiment - Vegetation Monitoring on a Coastal Virginia Forest, 2019-2020

description: This dataset contains data on vegetation (shrubs, trees, non-woody vegetation, seedlings and Phragmites occurrence in permanent plots at the Brownsville Forest near Nassawadox, VA.
DOI: 10.6084/m9.figshare.19874794.v1
title: Figure 3D Luciferase.xlsx

description: Figure 3D Luciferase Data
DOI: 10.6084/m9.figshare.19874794.v2
title: Figure 3D Luciferase.xlsx

description: Raw Data
DOI: 10.6084/m9.figshare.19874794.v3
title: Figure 3D Luciferase.xlsx

description: Raw Data
DOI: 10.6084/m9.figshare.19874794.v4
title: Figure 3D Luciferase.xlsx

description: Raw Data
DOI: 10.5287/bodleian:avb5pwoed
title: Solid-state lithium battery cathodes operating at low pressures
DOI: 10.5281/zenodo.6574275
title: Data for the "Cirrus cloud thinning using a more physically-based ice microphysics scheme in the ECHAM-HAM GCM" manuscript

description: This repository contains the post-processed data files for plotting and interpreting the results of "Cirrus cloud thinning using a more physically-based ice microphysics scheme in the ECHAM-HAM GCM" study. The files are all netCDF4 except for the analysis files that show global mean values in a .txt format. The Version 3 tar file is smaller than Version 2 as we performed some code clean-up for some post-processing scripts that excluded redundant data files that were very large and that were not used for plotting or the analysis for the manuscript.
DOI: 10.5281/zenodo.4740389
title: Luftdaten.Info data set 2016 - 5min, 30min values

description: The data set contains the normalized averaged 5 and 30 minutes value of the Sensor.Community - archives, formerly Luftdaten.info, of the year 2016. The tar-archive includes the CSV-files, XZ-compressed. For each sensor and day, the averaged values are available and each CSV-file contains a header. For particulate matter data (sensors: PPD42NS,SDS011):<br> <em>timestamp,sensor_id,location,lat,lon,P1,durP1,ratioP1,P2,durP2,ratioP2</em> Description: timestamp: Date and Time of measurement sensor_id: ID of Sensor lat: Latitude lon: Longitude P1: value of Particle Matter 10µg/m³ (PM10) durP1: ratioP1: P2: value of Particle Matter 2.5µg/m³ (PM2.5) durP2: ratioP2:
DOI: 10.5281/zenodo.4740388
title: Luftdaten.Info data set 2016 - 5min, 30min values

description: The data set contains the normalized averaged 5 and 30 minutes value of the Sensor.Community - archives, formerly Luftdaten.info, of the year 2016. The tar-archive includes the CSV-files, XZ-compressed. For each sensor and day, the averaged values are available and each CSV-file contains a header. For particulate matter data (sensors: PPD42NS,SDS011):<br> <em>timestamp,sensor_id,location,lat,lon,P1,durP1,ratioP1,P2,durP2,ratioP2</em> Description: timestamp: Date and Time of measurement sensor_id: ID of Sensor lat: Latitude lon: Longitude P1: value of Particle Matter 10µg/m³ (PM10) durP1: ratioP1: P2: value of Particle Matter 2.5µg/m³ (PM2.5) durP2: ratioP2:
DOI: 10.34881/bhbsrq
title: COVID-19: Hegðun, líðan og viðhorf almennings í maí 2020

description: Árið 2020 gerði Félagsvísindastofnun Háskóla Íslands könnun á þátttöku og afstöðu Íslendinga til aðgerða almannavarna til að hefta útbreiðslu COVID-19 faraldursins. Könnunin var unnin í samstarfi við fræðafólk á Félagsvísindasviði Háskóla Íslands og er hluti af þjóðmálakönnunum Félagsvísindastofnunar, en í þeim er spurt um ýmis samfélagsleg málefni og það sem efst er á baugi hverju sinni. Markmið könnunarinnar var að safna gögnum um hegðun, líðan og viðhorf almennings til ýmissa mála tengdum COVID-19 faraldrinum, á tímum óvissu og hættu. Spurt er um hegðun fólks og áhrif faraldursins á hegðun þeirra, samskipti og framtíðarhorfur, auk afstöðu til ýmissa mála tengdum faraldrinum.
DOI: 10.5281/zenodo.6581281
title: Ptychographic X-ray spackle tracking (PXST) scan of the biomineralized shell of a marine planktonic diatom

description: The PXST scan of the biomineralized shell of a marine planktonic diatom sample measured at P11 beamtime of the PETRA III synchrotron radiation facility. The beam was focused with a pair of MLLs with focal lengths of 1.25 mm and 1.15 mm and numerical apertures of 0.014 and 0.015, in the vertical and horizontal directions, respectively. The X-ray beam photon energy was 17.5 keV.
description: We acknowledge support from DESY (Hamburg, Germany), a member of the Helmholtz Association HGF. Additional support was provided by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – 491245950 and by the Cluster of Excellence 'CUI: Advanced Imaging of Matter' of the Deutsche Forschungsgemeinschaft (DFG) – EXC 2056 – project ID 390715994.
DOI: 10.5281/zenodo.6581280
title: Ptychographic X-ray spackle tracking (PXST) scan of the biomineralized shell of a marine planktonic diatom

description: The PXST scan of the biomineralized shell of a marine planktonic diatom sample measured at P11 beamtime of the PETRA III synchrotron radiation facility. The beam was focused with a pair of MLLs with focal lengths of 1.25 mm and 1.15 mm and numerical apertures of 0.014 and 0.015, in the vertical and horizontal directions, respectively. The X-ray beam photon energy was 17.5 keV.
description: We acknowledge support from DESY (Hamburg, Germany), a member of the Helmholtz Association HGF. Additional support was provided by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – 491245950 and by the Cluster of Excellence 'CUI: Advanced Imaging of Matter' of the Deutsche Forschungsgemeinschaft (DFG) – EXC 2056 – project ID 390715994.