cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.x5s8zd
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-114.1188 29.69913, -113.9688 29.69913, -113.9688 29.84913, -114.1188 29.84913, -114.1188 29.69913))"
 ]
}

 The dataset includes 50 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046104-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w7shyd
title: Occurrence Download

description: A dataset containing 105123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tangara gyrola",
 "Country is Colombia"
 ]
}

 The dataset includes 105123 records from 207 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046077-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zu6a7q
title: Occurrence Download

description: A dataset containing 560 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Datos de telemetría GPS de dos especies de mamíferos en el municipio de Envigado"
 ]
}

 The dataset includes 560 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008915-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22zb37
title: Occurrence Download

description: A dataset containing 7261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Scaphiopus holbrookii (Harlan, 1835))"
 ]
}

 The dataset includes 7261 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003386-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15544552
title: MUDI: A Multimodal Biomedical Dataset for Understanding Pharmacodynamic Drug-Drug Interactions

description: This repository provides the full dataset, molecular representations, textual metadata, and preprocessing scripts used in the MUDI project. The dataset is designed for developing and benchmarking multimodal models that predict clinically meaningful drug–drug interactions (DDIs) from a pharmacodynamic perspective.

📁 Directory Structure

.
├── dataset/
│   ├── train.csv
│   └── test.csv
│
├── molecules/
│   ├── images/
│   │   └── [drug_id].png
│   └── graphs/
│       └── [drug_id].graphml
│
└── drug_info.json


📄 Dataset Overview

dataset/train.csv and dataset/test.csv

These two CSV files contain the labeled DDI pairs used for training and evaluation. Each file has the following columns:





Drug1: Unique identifier for the first drug




Interaction: One of the pharmacodynamic classes:



Synergism: Drug1 enhances the effect of Drug2

Antagonism: Drug1 reduces or neutralizes the effect of Drug2

New Effect (New Adverse): The combination causes a novel effect not present when the drugs are used separately





Drug2: Unique identifier for the second drug



All drug IDs correspond to keys in drug_info.json.

🧪 Molecular Representations

molecules/images/

Contains 2D structure diagrams of each drug, rendered from its SMILES representation.



File format: .png

Naming convention: [drug_id].png

Resolution: 1000×800 pixels

Can be used with any standard image model (e.g., Vision Transformer)


molecules/graphs/

Contains molecular graphs derived from SMILES, encoded in GraphML format.





File format: .graphml




Naming convention: [drug_id].graphml




Standard: Follows the GraphML specification




Recommended library: NetworkX




Structure:



Nodes: Atoms

Edges: Bonds between atoms (single, double, aromatic, etc.)




📚 Textual and Structural Metadata

drug_info.json

Contains comprehensive textual and structural information for every drug used in the dataset. Each entry has the following schema:

{
  "drug_id": {
    "name": "DrugName",
    "description": {
      "summary": "...",
      "indication": "...",
      "metabolism": "...",
      "moa": "...",
      "pharmacodynamics": "..."
    },
    "formula": "C20H25N3O",
    "smiles": "CC(C)NCC(O)..."
  }
}


These fields are used to build input features for textual and formula-based encoders.

📜 License and Citation



License: Creative Commons Attribution-NonCommercial 4.0 (CC BY-NC 4.0)

If you use this dataset in your research, please cite:


to be announced


🤝 Contact

For questions, feedback, or collaboration inquiries, please contact: 📧 [lhquynh@vnu.edu.vn]
DOI: 10.5281/zenodo.15544551
title: MUDI: A Multimodal Biomedical Dataset for Understanding Pharmacodynamic Drug-Drug Interactions

description: This repository provides the full dataset, molecular representations, textual metadata, and preprocessing scripts used in the MUDI project. The dataset is designed for developing and benchmarking multimodal models that predict clinically meaningful drug–drug interactions (DDIs) from a pharmacodynamic perspective.

📁 Directory Structure

.
├── dataset/
│   ├── train.csv
│   └── test.csv
│
├── molecules/
│   ├── images/
│   │   └── [drug_id].png
│   └── graphs/
│       └── [drug_id].graphml
│
└── drug_info.json


📄 Dataset Overview

dataset/train.csv and dataset/test.csv

These two CSV files contain the labeled DDI pairs used for training and evaluation. Each file has the following columns:





Drug1: Unique identifier for the first drug




Interaction: One of the pharmacodynamic classes:



Synergism: Drug1 enhances the effect of Drug2

Antagonism: Drug1 reduces or neutralizes the effect of Drug2

New Effect (New Adverse): The combination causes a novel effect not present when the drugs are used separately





Drug2: Unique identifier for the second drug



All drug IDs correspond to keys in drug_info.json.

🧪 Molecular Representations

molecules/images/

Contains 2D structure diagrams of each drug, rendered from its SMILES representation.



File format: .png

Naming convention: [drug_id].png

Resolution: 1000×800 pixels

Can be used with any standard image model (e.g., Vision Transformer)


molecules/graphs/

Contains molecular graphs derived from SMILES, encoded in GraphML format.





File format: .graphml




Naming convention: [drug_id].graphml




Standard: Follows the GraphML specification




Recommended library: NetworkX




Structure:



Nodes: Atoms

Edges: Bonds between atoms (single, double, aromatic, etc.)




📚 Textual and Structural Metadata

drug_info.json

Contains comprehensive textual and structural information for every drug used in the dataset. Each entry has the following schema:

{
  "drug_id": {
    "name": "DrugName",
    "description": {
      "summary": "...",
      "indication": "...",
      "metabolism": "...",
      "moa": "...",
      "pharmacodynamics": "..."
    },
    "formula": "C20H25N3O",
    "smiles": "CC(C)NCC(O)..."
  }
}


These fields are used to build input features for textual and formula-based encoders.

📜 License and Citation



License: Creative Commons Attribution-NonCommercial 4.0 (CC BY-NC 4.0)

If you use this dataset in your research, please cite:


to be announced


🤝 Contact

For questions, feedback, or collaboration inquiries, please contact: 📧 [lhquynh@vnu.edu.vn]
DOI: 10.15468/dl.6gjwhs
title: Occurrence Download

description: A dataset containing 662 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (90fd6680-349f-11d8-aa2d-b8a03c50a862, ae447c50-b8a8-11d8-92a4-b8a03c50a862, 8e1a97a0-3ca8-11d9-8439-b8a03c50a862, 33d232b5-5cc2-4521-8bd6-121c5bb41c32, 7b8aff00-a9f8-11d8-944b-b8a03c50a862, 396d5f30-dea9-11db-8ab4-b8a03c50a862, 5184e024-2899-4635-884b-c9d769e72cdd, 061b4f20-f241-11da-a328-b8a03c50a862, bc092ff0-02e4-11dc-991f-b8a03c50a862)",
 "TaxonKey is Macleania rupestris (Kunth) A.C.Sm."
 ]
}

 The dataset includes 662 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009230-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15555160
title: NSC-Search: Method for searching for similar motifs with non-standard compositions – Results

description: This research was funded by the National Science Centre in Poland (grant number 2021/41/N/ST6/01919)
DOI: 10.5281/zenodo.15555161
title: NSC-Search: Method for searching for similar motifs with non-standard compositions – Results

description: This research was funded by the National Science Centre in Poland (grant number 2021/41/N/ST6/01919)
DOI: 10.7910/dvn/8wq33k
title: Replication Data for:

description: Trajectory of pore closure in the bolalipid membrane
description: Supported data for the article.
DOI: 10.7910/dvn/g0sfgu
title: Political Science Peer Review Survey

description: Survey of Political Scientists on publishing in peer-reviewed journals. Pre-release: these data may require further cleaning
DOI: 10.7910/dvn/m3oc40
title: Petition of Shubael Gorham

description: &lt;p&gt;Petition subject: Servitude &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:26855846"&gt;http://nrs.harvard.edu/urn-3:FHCL:26855846&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: 1739-05 &lt;/p&gt; &lt;p&gt;Petition location: [Barnstable county] &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Shubael Gorham&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1739-07-06,1739-07-07,1739-07-09 &lt;/p&gt; &lt;p&gt;Legislative action: Received and read in the Council on July 6, 1739 and received and read and granted in the House on July 7, 1739 and sent for concurrence and received and read and concurred in the Council on July 9, 1739 &lt;/p&gt; &lt;p&gt;Total signatures: 1 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, read, received, read, granted, sent, received, read, concurred &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 1 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: Esqr sheriff of the county of Barnstable & keeper of his majties goal in sd town &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Native American tribe: Mashpee &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt; &lt;p&gt;Additional archivist notes: Shuball Gorham, permission to sell David Stevens of Chatham into indentured servitude, servants, could not pay his prison fees, jails, imprisonment, accused of murdering another Indian, Samuel Thornshill, Samuel Thomshill, Samuel Tompshill, Samuel Tornpshill, Samuel Sion, Samuel Lion, Samuel Lyon, jury, special verdict, murder, manslaughter, escape, sentenced him to be burnt with a hot marking iron and to pay costs of prosecution, ten years, Boston, jails, county courts, court of general sessions of the peace, Provincetown, Province Town, Samuel Thompson, John Quincy, John Chandler, Jonathan Belcher, [additional documents in volumes, see pages 231-233] &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Massachusetts Archives volume 31, pages 228-230a &lt;/p&gt;
DOI: 10.7910/dvn/5ruvdp
title: Replication Data for: iTRAQ -based proteomics of sunflower cultivars differing in resistance to parasitic weed Orobanche cumana

description: The data was generated by using iTRAQ to investigate the mechanistic basis of compatible and incompatible interaction of parasitic weed Orobanche cumana with resistant (JY207) and susceptible (TK0409) sunflowers. We used roots as samples to conduct differential proteomics on sunflowers exposed to O. cumana, and then investigated the differential proteins and pathways between resistant and susceptible cultivars to reveal the mechanisms underlying their different reactions against O. cumana.
DOI: 10.7910/dvn/6sbney
title: Wright Files I-Z Edited; Docketed Case: 80-1756
DOI: 10.7910/dvn/dnhvr
title: Senate Unpassed Legislation 1855, Docket 18373, SC1/series 231, Petition of D.P. Butler

description: &lt;p&gt;Petition subject: For the removal of Edward Greeley Loring &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:11858575"&gt;http://nrs.harvard.edu/urn-3:FHCL:11858575&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Boston, Charlestown &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: John L. Swift, Boston; committee on federal relations &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;D.P. Butler&lt;/li&gt;&lt;li&gt;John C. Haynes&lt;/li&gt;&lt;li&gt;John D. Willard&lt;/li&gt;&lt;li&gt;Henry P. Trask&lt;/li&gt;&lt;li&gt;Lewis Hayden&lt;/li&gt;&lt;li&gt;Amos Redlon&lt;/li&gt;&lt;li&gt;James Johnson&lt;/li&gt;&lt;li&gt;Thomas N. Chase&lt;/li&gt;&lt;li&gt;Frederic H. Henshaw&lt;/li&gt;&lt;li&gt;Charles Fessenden&lt;/li&gt;&lt;li&gt;Henry Fleming&lt;/li&gt;&lt;li&gt;Ann Maria Henshaw&lt;/li&gt;&lt;li&gt;Elizabeth Hoyt&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1855-02-13 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the House on February 13, 1855 and referred to the committee on federal relations and sent for concurrence &lt;/p&gt; &lt;p&gt;Total signatures: 57 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, referred, sent &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 44 &lt;/p&gt; &lt;p&gt;Female signatures: 5 &lt;/p&gt; &lt;p&gt;Other male signatures: 4 &lt;/p&gt; &lt;p&gt;Unidentified signatures: 4 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: legal voters, others, [females], [other males], [males of color] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Printed &lt;/p&gt; &lt;p&gt;Signatory column format: column separated &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: no additional documents &lt;/p&gt; &lt;p&gt;Additional archivist notes: Includes one address; basing legislative information for next three petitions on the wrapper preceding them &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Senate Unpassed 1855, Docket 18373 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/i2iswe
title: Replication Data for: Re-examining the Costs of Sanctions and Sanctions Threats Using Stock Market Data

description: Are sanctions and sanctions threats costly for the sanctioning state? The
costs of sanctions for the sender are an important feature of many
theories developed to explain the use and utility of economic sanctions.
Despite the prominence of this assumption in existing research, there
are only a handful of studies that have endeavored to analyze or
estimate the economic consequences of sanctions for sender states. This
paper builds a theoretical framework that connects the costs of sanctions
for sender firms with a phenomenon that can be observed, stock market
data. Sanctions and sanctions threats should create market uncertainty
that is reflected in stock price volatility for firms with commercial
interests in targeted states. Comparisons are made using stock price
data for firms within sectors at the same point in time, within sectors
over time, and across sectors over time. The stock prices for firms with
commercial interests in targeted states are more volatile than stock
prices for comparable firms without commercial interests in targeted
states. These spells of uncertainty not only reflect the costs of sanctions
and sanctions threats for firms caused by interruptions in commercial
activities but represent important costs for firms in-and-of themselves.
DOI: 10.7910/dvn/q0bivw
title: Replication Data for: Birds of a Feather Get Angrier Together: Social Media News Use and Social Media Political Homophily as Antecedents of Political Anger

description: The replication data for the upcoming article in Political Behavior - "Birds of a Feather Get Angrier Together: Social Media News Use and Social Media Political Homophily as Antecedents of Political Anger" can be found here. 
The paper is co-authored with Dr. Hugo Marcos-Marne and Dr. Homero Gil de Zúñiga.
DOI: 10.6084/m9.figshare.29210897
title: qx222.csv

description: 居民的 出行 轨迹
DOI: 10.6084/m9.figshare.29210897.v1
title: qx222.csv

description: 居民的 出行 轨迹
DOI: 10.7910/dvn/waya0d
title: Replication Data for: Locked Out of College: When Admissions Bureaucrats Do and Do Not Discriminate

description: How does a criminal record shape interactions with the State and society? We present evidence from a nationwide field experiment in the United States, showing that prospective applicants with criminal records are about five percentage points less likely to receive information from college admission offices. However, we demonstrate that bias does not extend to race. There is no difference in response rates to Black and White applicants. We further show that bias is all but absent in public bureaucracies, as discrimination against formerly incarcerated applicants is driven by private schools. Examining why bias is stronger for private colleges, we demonstrate that the private-public difference persists even after accounting for college selectivity, socio-economic composition and school finances. Moving beyond the measurement of bias, we evaluate an intervention aimed at reducing discrimination: whether an email from an advocate mitigates bias associated with a criminal record. However, we find no evidence that advocate endorsements decrease bureaucratic bias.
description: Please see the README.txt file for further information.
DOI: 10.7910/dvn/w5my3d
title: Farmer adoption of living fences, Battambang, Cambodia

description: Data from 36 smallholder farmers in Battambang Province, NW Cambodia, about their adoption of living fence technologies. 49 farmers were trained at the Battambang CE SAIN tech park in Jan 2019. These survey data were collected in Dec 2018 and Jan 2019, one year following that training. 36 of the 49 farmers who were trained completed the survey. 28 farmers indicated adoption of living fence technologies.
DOI: 10.7910/dvn/l53anm
title: Trends in the epidemiology of brucellosis in a highly burdened region in Egypt: A 16 year experience (1997-2012).

description: Trends in the epidemiology of brucellosis in a highly burdened region in Egypt: A 16 year experience (1997-2012).Retrospective clinical data for 4371 brucellosis patients admitted over the study period. prospective clinical data for patients admitted during the year 2007
DOI: 10.7910/dvn/laxhs3
title: Replication Data for: "Committed moderates and uncommitted extremists: ideological leaning and parties’ narratives on military interventions in Italy" 9 January 2021

description: Curini, Luigi; Vignoli, Valerio, 2021, "Replication Data for: "Committed moderates and uncommitted extremists: ideological leaning and parties’ narratives on military interventions in Italy" 9 January 2021"
DOI: 10.7910/dvn/7cr6fe
title: Replication Data for: TAXES AND ECONOMIC GROWTH IN OECD COUNTRIES: A META-ANALYSIS

description: The files in this collection will allow one to reproduce the results in the paper, "Taxes and Economic Growth in OECD Countries: A Meta-Analysis". The README file provides more details. Note that the data for this project will be added once the paper is published.
DOI: 10.7910/dvn/wasdzg
title: Replication Data for: Conviction of Multiparty Competition and Elections among Chinese College Students: A List Experiment Study

description: The dataset is to see how college students in China understand the term ``democracy" via list experiment. It was implemented via PPS sampling in China in 2017.
DOI: 10.7910/dvn/fzaa9
title: Massachusetts Archives Collection. v.184-Revolution Petitions, 1778-1779. SC1/series 45X, Petition of Jonathan Pike

description: &lt;p&gt;Petition: Property &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:13909115"&gt;http://nrs.harvard.edu/urn-3:FHCL:13909115&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: 1779-02-05 &lt;/p&gt; &lt;p&gt;Petition location: Boston &lt;/p&gt; &lt;p&gt;Top signatures:&lt;ol&gt;&lt;li&gt;Jonathan Pike&lt;/li&gt;&lt;li&gt;Daniel Halsey&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Total signatures: 2 &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 2 &lt;/p&gt; &lt;p&gt;Identifications of signatories: baker, mathematical instrument maker, [males of color?] &lt;/p&gt; &lt;p&gt;Prayer for
mat was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Additional archivist notes: Reverend Brooks, Doctor John Clark, Halifax, Nova Scotia, Jonathan Pike, Daniel Halsey, Simeon Howard, William Clark, Great Britain, [additional documents in volumes] &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe
Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.
&lt;/p&gt;