cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hr0sp
title: Data from: Global database of paleocurrent trends through the Phanerozoic and Precambrian

description: Paleocurrents are sedimentological features contained in all sedimentary
 deposits, enabling the direction of movement of the sediment and the
 containing fluid at the time of deposition to be determined. This database
 contains paleocurrent directions and other relevant associated data from
 published sources and theses and dissertations for the entire Phanerozoic
 and Precambrian for all continents. Such information may be of general
 interest to sedimentologists and will be of specific interest in
 sedimentary basin analysis, and to petroleum geologists and mineralogists
 seeking source areas. Paleocurrents may also be useful in plate
 reconstructions and in testing the timing of global tectonic events.
description: PaleocurrentDatabaseDatabase contains paleocurrent data arranged by geographic and stratigraphic content. Database is organized with each publication given a unique number that is used for all datasets derived from that publication. Each row begins with that descriptor, and includes for each unique number, one entry that gives author(s), title, date, source, volume, and pages. All entries include Period (stratigraphy), Longitude, Latitude, Direction (flow was moving toward), #Data (in each dataset), Area sq km, Dispersion, Continent, Environment, Paleocurrent indicator, Lithology, and Formation.
DOI: 10.25625/a2z8t8/hs8eul
title: Mariensee_MC_fluxes_30min.csv

description: :unav
DOI: 10.25625/a2z8t8/mmiggm
title: Vechta_MC_fluxes_30min.csv

description: :unav
DOI: 10.25625/a2z8t8/xson7x
title: Dornburg_MC_precipitation_1h.tab

description: :unav
DOI: 10.25625/a2z8t8/j3it3c
title: Wendhausen_AF_fluxes_30min.csv

description: :unav
DOI: 10.25625/a2z8t8/sstm9u
title: variables_name_unit_eddycov.tab

description: :unav
DOI: 10.5061/dryad.17m5q
title: Data from: Ebola cases and health system demand in Liberia

description: In 2014, a major epidemic of human Ebola virus disease emerged in West
 Africa, where human-to-human transmission has now been sustained for
 greater than 12 months. In the summer of 2014, there was great uncertainty
 about the answers to several key policy questions concerning the path to
 containment. What is the relative importance of nosocomial transmission
 compared with community-acquired infection? How much must hospital
 capacity increase to provide care for the anticipated patient burden? To
 which interventions will Ebola transmission be most responsive? What must
 be done to achieve containment? In recent years, epidemic models have been
 used to guide public health interventions. But, model-based policy relies
 on high quality causal understanding of transmission, including the
 availability of appropriate dynamic transmission models and reliable
 reporting about the sequence of case incidence for model fitting, which
 were lacking for this epidemic. To investigate the range of potential
 transmission scenarios, we developed a multi-type branching process model
 that incorporates key heterogeneities and time-varying parameters to
 reflect changing human behavior and deliberate interventions in Liberia.
 Ensembles of this model were evaluated at a set of parameters that were
 both epidemiologically plausible and capable of reproducing the observed
 trajectory. Results of this model suggested that epidemic outcome would
 depend on both hospital capacity and individual behavior. Simulations
 suggested that if hospital capacity was not increased, then transmission
 might outpace the rate of isolation and the ability to provide care for
 the ill, infectious, and dying. Similarly, the model suggested that
 containment would require individuals to adopt behaviors that increase the
 rates of case identification and isolation and secure burial of the
 deceased. As of mid-October, it was unclear that this epidemic would be
 contained even by 99% hospitalization at the planned hospital capacity. A
 new version of the model, updated to reflect information collected during
 October and November 2014, predicts a significantly more constrained set
 of possible futures. This model suggests that epidemic outcome still
 depends very heavily on individual behavior. Particularly, if future
 patient hospitalization rates return to background levels (estimated to be
 around 70%), then transmission is predicted to remain just below the
 critical point around Reff = 1. At the higher hospitalization rate of 85%,
 this model predicts near complete elimination in March to June, 2015.
description: Data from: Ebola cases
 and health system demand in LiberiaThis zip directory
 contains the data, R code, and simulation results required to reproduce
 analyses reported in the associated paper.data-and-code.zip
DOI: 10.25625/a2z8t8/iek98b
title: Forst_AF_meteo_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/13x6o6
title: Dornburg_MC_fluxes_30min.csv

description: :unav
DOI: 10.25625/a2z8t8/qhlzhi
title: Wendhausen_MC_meteo_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/qlqi2g
title: Forst_MC_meteo_30min.tab

description: :unav
DOI: 10.5061/dryad.n13ts
title: Data from: Spiders spinning electrically charged nano-fibres

description: Most spider threads are on the micrometre and sub-micrometre scale. Yet,
 there are some spiders that spin true nano-scale fibres such as the
 cribellate orb spider, Uloborus plumipes. Here, we analyse the highly
 specialized capture silk-spinning system of this spider and compare it
 with the silk extrusion systems of the more standard spider dragline
 threads. The cribellar silk extrusion system consists of tiny,
 morphologically basic glands each terminating through exceptionally long
 and narrow ducts in uniquely shaped silk outlets. Depending on spider
 size, hundreds to thousands of these outlet spigots cover the cribellum, a
 phylogenetically ancient spinning plate. We present details on the unique
 functional design of the cribellate gland–duct–spigot system and discuss
 design requirements for its specialist fibrils. The spinning of fibres on
 the nano-scale seems to have been facilitated by the evolution of a highly
 specialist way of direct spinning, which differs from the aqua-melt silk
 extrusion set-up more typical for other spiders.
description: Duct
 measurementsMean length, mean
 internal diameter and mean thickness of the cuticle of a typical cribellar
 silk extrusion duct were measured in Photoshop CS2.VideoS1For the assessment of the hackling speed of Uloborus plumipes, the spider was recorded with a Canon 5D Mark III in full HD (1920 x 1080) using LED-lamps (Dedolight Ledzilla).
DOI: 10.25625/a2z8t8/9g1gal
title: Dornburg_AF_precipitation_1h.tab

description: :unav
DOI: 10.25625/a2z8t8/cpuuui
title: Wendhausen_AF_precipitation_1h.tab

description: :unav
DOI: 10.25625/a2z8t8/jpmboq
title: Mariensee_AF_fluxes_30min.csv

description: :unav
DOI: 10.5061/dryad.n855t
title: Data from: A generation time effect on the rate of molecular evolution in bacteria

description: Molecular evolutionary rate varies significantly among species and a
 strict global molecular clock has been rejected across the tree of life.
 Generation time is one primary life-history trait that influences the
 molecular evolutionary rate. Theory predicts that organisms with shorter
 generation times evolve faster because of the accumulation of more DNA
 replication errors per unit time. While the generation-time effect has
 been demonstrated consistently in plants and animals, the evidence of its
 existence in bacteria is lacking. The bacterial phylum Firmicutes offers
 an excellent system for testing generation-time effect because some of its
 members can enter a dormant, non-reproductive endospore state in response
 to harsh environmental conditions. It follows that spore-forming bacteria
 would—with their longer generation times—evolve more slowly than their
 non-spore forming relatives. It is therefore surprising that a previous
 study found no generation-time effect in Firmicutes. Using a phylogenetic
 comparative approach and leveraging on a large number of Firmicutes
 genomes, we found sporulation significantly reduces the genome-wide
 spontaneous DNA mutation rate and protein evolutionary rate. Contrary to
 the previous study, our results provide strong evidence that the
 evolutionary rates of bacteria, like those of plants and animals, are
 influenced by generation-time.
description: Firmicutes Phylum Level
 MarkersAn archive containing
 amino acid sequence alignments of 168 phylum-level markers for 573
 Firmicutes bacteria genomes. Sequences were identified using the
 Phyla-AMPHORA package (Wang & Wu 2013, DOI
 10.1093/molbev/mst059).Firmicutes_168_Markers.rar
DOI: 10.25625/a2z8t8/elhdlf
title: Dornburg_AF_fluxes_30min.csv

description: :unav
DOI: 10.25625/a2z8t8/h0czgt
title: Vechta_AF_precipitation_1h.tab

description: :unav
DOI: 10.25625/a2z8t8/s6hmsf
title: Wendhausen_MC_fluxes_30min.csv

description: :unav
DOI: 10.25625/a2z8t8/rrtgxj
title: Wendhausen_MC_precipitation_1h.tab

description: :unav
DOI: 10.5061/dryad.4j7jh
title: Data from: Combining GWAS and RNA-seq approaches for detection of the causal mutation for hereditary junctional epidermolysis bullosa in sheep

description: In this study, we demonstrate the use of a genome-wide association mapping
 together with RNA-seq in a reduced number of samples, as an efficient
 approach to detect the causal mutation for a Mendelian disease. Junctional
 epidermolysis bullosa is a recessive genodermatosis that manifests with
 neonatal mechanical fragility of the skin, blistering confined to the
 lamina lucida of the basement membrane and severe alteration of the
 hemidesmosomal junctions. In Spanish Churra sheep, junctional
 epidermolysis bullosa (JEB) has been detected in two commercial flocks.
 The JEB locus was mapped to Ovis aries chromosome 11 by GWAS and
 subsequently fine-mapped to an 868-kb homozygous segment using the
 identical-by-descent method. The ITGB4, which is located within this
 region, was identified as the best positional and functional candidate
 gene. The RNA-seq variant analysis enabled us to discover a 4-bp deletion
 within exon 33 of the ITGB4 gene (c.4412_4415del). The c.4412_4415del
 mutation causes a frameshift resulting in a premature stop codon at
 position 1472 of the integrin β4 protein. A functional analysis of this
 deletion revealed decreased levels of mRNA in JEB skin samples and the
 absence of integrin β4 labeling in immunohistochemical assays. Genotyping
 of c.4412_4415del showed perfect concordance with the recessive mode of
 the disease phenotype. Selection against this causal mutation will now be
 used to solve the problem of JEB in flocks of Churra sheep. Furthermore,
 the identification of the ITGB4 mutation means that affected sheep can be
 used as a large mammal animal model for the human form of epidermolysis
 bullosa with aplasia cutis. Our approach evidences that RNA-seq offers
 cost-effective alternative to identify variants in the species in which
 high resolution exome-sequencing is not straightforward.
description: Files for association
 mappingGenotypes, Phenotypes
 and Map files for association analysis (PLINK format)AssociationFiles_PLINK.zip
DOI: 10.60545/9kckur
title: Colección de Herpetología del Museo de Zoología de la Universidad Tecnológica Indoamérica (MZUTI)

description: El Museo de Herpetología de la Universidad Tecnológica Indoamérica (MZUTI) actualmente cuenta con más de 6000 especímenes catalogados y sistematizados.
&lt;br&gt;
Esta colección cuenta con una buena representatividad de especies colectadas en todas las provincias continentales del Ecuador.
&lt;br&gt;
En la colección se almacenan: Especímenes enteros en etanol 75%, Tejidos en etanol 96% y en RNAlater (criopreservados), huevos y renacuajos en formol 10% y contenidos estomacales-intestinales. &lt;br&gt;
Las colecciones científicas del Museo de Herpetología de la Universidad Tecnológica Indoamérica (MZUTI) se encuentran disponibles con fines de investigación y están abiertas a investigadores tanto nacionales como internacionales.
DOI: 10.25625/a2z8t8/mldoaf
title: Dornburg_AF_meteo_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/yxuwsd
title: Mariensee_MC_precipitation_1h.tab

description: :unav
DOI: 10.25625/a2z8t8/5qkjjj
title: Mariensee_AF_precipitation_1h.tab

description: :unav
DOI: 10.25625/a2z8t8/r1k1ac
title: variables_name_unit_meteo.tab

description: :unav
DOI: 10.25625/a2z8t8/tngylx
title: Dornburg_MC_fluxes_30min.tab

description: :unav
DOI: 10.5061/dryad.n4v3b
title: Data from: The evolution of sex chromosomes in organisms with separate haploid sexes

description: The evolution of dimorphic sex chromosomes is driven largely by the
 evolution of reduced recombination and the subsequent accumulation of
 deleterious mutations. While these processes are increasingly well
 understood in diploid organisms, the evolution of dimorphic sex
 chromosomes in haploid organisms (U/V) has been virtually unstudied
 theoretically. We analyze a model to investigate the evolution of linkage
 between fitness loci and the sex-determining region in U/V species. In a
 second step, we test how prone non-recombining regions are to degeneration
 due to accumulation of deleterious mutations. Our modeling predicts that
 the decay of recombination on the sex chromosomes and the addition of
 strata via fusions will be just as much a part of the evolution of haploid
 sex chromosomes as in diploid sex chromosome systems. Reduced
 recombination is broadly favored, as long as there is some fitness
 difference between haploid males and females. The degeneration of the
 sex-determining region due to the accumulation of deleterious mutations is
 expected to be slower in haploid organisms because of the absence of
 masking. Nevertheless, balancing selection often drives greater
 differentiation between the U/V sex chromosomes than in X/Y and Z/W
 systems. We summarize empirical evidence for haploid sex chromosome
 evolution and discuss our predictions in light of these findings.
description: Supplementary
 Mathematica file_Immler&OttoMathematica file
 containing full models and approximations referred to in the
 manuscript.RecModifierUV_6Dec2014.nb
DOI: 10.82294/dvnyfzzka
title: COPUS. Territorio: Barrancabermeja. Sector: Educación. Año: 2024
title: Dato. Observación estructurada con el protocolo COPUS.

description: Información recopilada durante el año 2024 a partir de observaciones estructuradas realizadas con el protocolo COPUS, dirigidas a educadores artísticos pertenecientes a programas de formación en educación artística y cultural del sector Educación (educación formal) en la ciudad de Barrancabermeja.
DOI: 10.25625/a2z8t8/1dhxhd
title: Vechta_AF_meteo_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/yh6v71
title: Dornburg_AF_fluxes_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/mjvaew
title: Wendhausen_AF_fluxes_30min.tab

description: :unav
DOI: 10.5061/dryad.sm925
title: Data from: Visuomotor adaptation: how forgetting keeps us conservative

description: Even when provided with feedback after every movement, adaptation levels
 off before biases are completely removed. Incomplete adaptation has
 recently been attributed to forgetting: the adaptation is already
 partially forgotten by the time the next movement is made. Here we test
 whether this idea is correct. If so, the final level of adaptation is
 determined by a balance between learning and forgetting. Because we learn
 from perceived errors, scaling these errors by a magnification factor has
 the same effect as subjects increasing the amount by which they learn from
 each error. In contrast, there is no reason to expect scaling the errors
 to affect forgetting. The magnification factor should therefore influence
 the balance between learning and forgetting, and thereby the final level
 of adaptation. We found that adaptation was indeed more complete for
 larger magnification factors. This supports the idea that incomplete
 adaptation is caused by part of what has been learnt quickly being
 forgotten.
description: Adaptation data -
 movement pathsData files with for each
 subject folder, for each magnification condition ('small' = m =
 0.5; zero = m = 1; large = m = 2) the input files with target locations
 and feedback availability and the output files with movement paths towards
 each target position. The last number in the output_condition_number
 filename correspond to the trial numbers in the input
 file.data_scale.zip
DOI: 10.25625/a2z8t8/ikqekg
title: Vechta_MC_fluxes_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/von9mu
title: Mariensee_AF_fluxes_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/gmcqea
title: Vechta_AF_fluxes_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/qzigoz
title: Wendhausen_MC_fluxes_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/aashts
title: Forst_AF_meteo_30min.tab

description: :unav
DOI: 10.5061/dryad.0g2f5
title: Data from: Impact of past climatic changes and resource availability on the population demography of three food-specialist bees

description: Past climate change is known to have strongly impacted current patterns of
 genetic variation of animals and plants in Europe. However, ecological
 factors also have the potential to influence demographic history, and thus
 patterns of genetic variation. In this study, we investigated the impact
 of past climate, and also the potential impact of host plant species
 abundance, on intraspecific genetic variation in three co-distributed and
 related specialized solitary bees of the genus Melitta with very similar
 life history traits and dispersal capacities. We sequenced five
 independent loci in samples collected from the three species. Our analyses
 revealed that the species associated with the most abundant host plant
 species (Melitta leporina) displays unusually high genetic variation, to
 an extent that is seldom reported in phylogeographic studies of animals
 and plants. This suggests a potential role of food resource abundance in
 determining current patterns of genetic variation in specialized
 herbivorous insects. Patterns of genetic variation in the two other
 species indicated lower overall levels of diversity, and that M. nigricans
 could have experienced a recent range expansion. Ecological niche
 modelling of the three Melitta species and their main host plant species
 suggested a strong reduction in range size during the last glacial
 maximum. Comparing observed sequence data with data simulated using
 spatially explicit models of coalescence suggests that M. leporina
 recovered a range and population size close to their current levels at the
 end of the last glaciation, and confirms recent range expansion as the
 most likely scenario for M. nigricans. Overall, this study illustrates
 that both demographic history and ecological factors may have contributed
 to shape current phylogeographic patterns.
description: DNA sequence
 alignmentsDNA sequence alignments
 for haplotype as well as individual sequences (two alignments per gene:
 with one sequence per haplotype and with one sequence per
 individual).DNA_sequence_alignments.zipOccurence data for ENMOccurence data used for ENM (ecological niche modelling).Occurence_data_for_ENM.zipGenBank accession numbersText file with GenBank accession number of each haplotype sequence.GenBank_accession_numbers.txtPopulation IDs & coordinatesExcel file with population ID, coordinates and location of each sampled population.Population_IDs_&_coordinates.xlsx
DOI: 10.25625/a2z8t8/mqffvf
title: Mariensee_MC_fluxes_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/2zijpy
title: Vechta_MC_meteo_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/73vrh2
title: Dornburg_AF_meteo_30min.tab

description: :unav
DOI: 10.60545/9pwbbr
title: Colección de Invertebrados del Museo de Zoología de la Universidad Tecnológica Indoamérica (MZUTI)

description: Hasta el periodo 2024 el museo de Zoología “MZUTI” sección invertebrados se encuentra en el código de etiqueta MZUTI-Inv- 20064 que hacen referencia a muestras de lotes o especímenes de invertebrados, de los cuales solo 690 especímenes de invertebrados han ingresado desde el año (2022). Desde 2022, se han realizado colectas principalmente de las provincias de Morona Santiago y Zamora Chinchipe con énfasis en arañas y escorpiones.
DOI: 10.25625/a2z8t8/m7xnio
title: Mariensee_MC_meteo_30min.tab

description: :unav
DOI: 10.5061/dryad.34qm4
title: Data from: Why is Madagascar special? The extraordinarily slow evolution of pelican spiders (Araneae, Archaeidae)

description: Although Madagascar is an ancient fragment of Gondwana, the majority of
 taxa studied thus far appear to have reached the island through dispersal
 from Cenozoic times. Ancient lineages may have experienced a different
 history compared to more recent Cenozoic arrivals, as such lineages would
 have encountered geoclimatic shifts over an extended time period. The
 motivation for this study was to unravel the signature of diversification
 in an ancient lineage by comparing an area known for major geoclimatic
 upheavals (Madagascar) versus other areas where the environment has been
 relatively stable. Archaeid spiders are an ancient paleoendemic group with
 unusual predatory behaviors and spectacular trophic morphology that likely
 have been on Madagascar since its isolation. We examined disparities
 between Madagascan archaeids and their non-Madagascan relatives regarding
 timing of divergence, rates of trait evolution, and distribution patterns.
 Results reveal an increased rate of adaptive trait diversification in
 Madagascan archaeids. Furthermore, geoclimatic events in Madagascar over
 long periods of time may have facilitated high species richness due to
 montane refugia and stability, rainforest refugia, and also ecogeographic
 shifts, allowing for the accumulation of adaptive traits. This research
 suggests that time alone, coupled with more ancient geoclimatic events
 allowed for the different patterns in Madagascar.
description: MrBayes phylogenetic
 analysis: DNA and morphologyThis is the MrBayes
 phylogenetic analyses of the total evidence data: DNA and
 morphologyARCH_DNA+morphology_MrBayes.txtMrBayes phylogenetic analysis of only molecular dataThis is the MrBayes phylogenetic analysis of only the molecular data (four concatenated genetic markers)ARCH_4gene_MrBayes.nexMrBayes phylogenetic analysis only morphologyThis is the MrBayes phylogenetic analysis of only the morphological dataARCH_morphology_MrBayes.nexDivergence dating analysis in BEASTThis is the divergence dating analysis performed in BEASTARCH_BEAST_analysis.xmlDivergence dating analysis in BEAST including additional Australian taxa, Supp InfoThis is the divergence dating analysis performed in BEAST that includes the additional Australian taxa. The results from this analysis is shown and discussed in the Supplementary Information. The additional Australian taxa sequences are taken from Rix and Harvey (2012), see Supplementary Information for full citation.ARCH_BEAST_analysis_with_AUSTRALIA_SuppInfo.xmlBrownie analysis of morphological measurementsThe censored rate test of morphological data, performed in Brownie v.2.1. This analysis can be performed treating Madagascar as one group or as two groups as defined in the analysis.Brownie_analysis_measurements_by_cpwidth.nexBrownie analysis of habitatThe censored rate test of habitat data, performed in Brownie v.2.1. This analysis can be performed treating Madagascar as one group or as two groups as defined in the analysis.Brownie_analysis_habitat.nex
DOI: 10.25625/a2z8t8/oqc1q2
title: Forst_MC_meteo_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/jtqaem
title: Forst_MC_fluxes_30min.tab

description: :unav
DOI: 10.25625/a2z8t8/uxyc8q
title: Forst_AF_fluxes_30min.tab

description: :unav