cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0164397.10fu
title: SH0164397.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0164398.10fu
title: SH0164398.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0164399.10fu
title: SH0164399.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.6v7h4m
title: Occurrence Download

description: A dataset containing 216838 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vanderhorstia ornatissima, Vanderhorstia steelei, Vanneaugobius canariensis, Vanneaugobius pruvoti, Variola albimarginata, Variola louti, Velifer hypselopterus, Vespicula cypho, Virididentex acromegalus, Vladichthys gloverensis, Wetmorella albofasciata, Wetmorella nigropinnata, Wetmorella tanakai, Wheelerigobius maltzani, Wheelerigobius wirtzi, Xanthichthys auromarginatus, Xanthichthys caeruleolineatus, Xanthichthys lineopunctatus, Xanthichthys mento, Xanthichthys ringens, Xenichthys agassizii, Xenichthys rupestris, Xenichthys xanti, Xenisthmus africanus, Xenisthmus balius, Xenisthmus chi, Xenisthmus clarus, Xenisthmus eirospilus, Xenisthmus polyzonatus, Xenisthmus semicinctus, Xenoconger fryeri, Xenomedea rhodopyga, Xenopoclinus kochi, Xenopoclinus leprosus, Xestochilus nebulosus, Xiphasia matsubarai, Xiphasia setifer, Xyrichtys blanchardi, Xyrichtys incandescens, Xyrichtys martinicensis, Xyrichtys mundiceps, Xyrichtys novacula, Xyrichtys sanctaehelenae, Xyrichtys splendens, Xyrichtys victori, Xyrichtys wellingtoni, Yirrkala chaselingi, Yirrkala fusca, Yirrkala lumbricoides, Yirrkala macrodon, Yirrkala moorei, Zalembius rosaceus, Zanclus cornutus, Zebrasoma desjardinii, Zebrasoma flavescens, Zebrasoma gemmatum, Zebrasoma rostratum, Zebrasoma scopas, Zebrasoma xanthurum, Zenarchopterus buffonis, Zenarchopterus dispar, Zenarchopterus gilli, Zephyrichthys barryi, Zoramia fragilis, Zoramia gilberti, Zoramia perlita, Zoramia viridiventer)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 216838 records from 379 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008246-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukcyyq
title: Occurrence Download

description: A dataset containing 2225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-18.35800 28.43695,-17.29022 28.43695,-17.29022 28.86407,-18.35800 28.86407,-18.35800 28.43695))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Polypodiopsida"
 ]
}

 The dataset includes 2225 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136864-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5jt3b
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptocaris stromatolicolus Zamudio-Valdés & Reid, 1990"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122612-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zcgtqu
title: Occurrence Download

description: A dataset listing the 15 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mikania micrantha Kunth"
 ]
}

 The dataset's 15 records were derived from 331 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139369-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5veaaq
title: Occurrence Download

description: A dataset containing 417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lobelia sessilifolia Lamb.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 417 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188235-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbhuu7
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aspidosperma megalocarpon Müll.Arg.",
 "HasGeospatialIssue is FALSE",
 "Year is 2000,2022",
 "HasCoordinate is TRUE",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 93 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138221-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzf3ec
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anadyomene saldanhae A.B.Joly & E.C.Oliveira"
 ]
}

 The dataset includes 267 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139377-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.632v4j
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pachira retusa (Mart. & Zucc.) Fern.Alonso"
 ]
}

 The dataset includes 90 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258162-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xs9xfx
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptochela chacei Hayashi, 1995"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122637-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqrxvq
title: Occurrence Download

description: A dataset containing 49068 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbarium of Taiwan Biodiversity Research Institute, TAIWAN (TAIE)"
 ]
}

 The dataset includes 49068 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123654-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkx88h
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pternopetalum vulgare (Dunn) Hand.-Mazz."
 ]
}

 The dataset includes 241 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240720-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gez48n
title: Occurrence Download

description: A dataset containing 1301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spodoptera littoralis (Boisduval, 1833)"
 ]
}

 The dataset includes 1301 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0167267-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kpgsxu
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lucicutia wolfendeni Sewell, 1932"
 ]
}

 The dataset includes 63 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123645-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwy9yg
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptochela aculeocaudata Paul'son, 1875"
 ]
}

 The dataset includes 27 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122634-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kc4ajq
title: Occurrence Download

description: A dataset containing 17178 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sequoia Endl."
 ]
}

 The dataset includes 17178 records from 362 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240267-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brcfre
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lucifer orientalis Hansen, 1919"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123646-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmjf8k
title: Occurrence Download

description: A dataset containing 8546 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ximenia americana L."
 ]
}

 The dataset includes 8546 records from 338 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240270-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57byvm
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptochela bermudensis Gurney, 1939"
 ]
}

 The dataset includes 68 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122635-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhunuh
title: Occurrence Download

description: A dataset containing 283732 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ailanthus altissima (Mill.) Swingle, Ailanthus glandulosa Desf., Rhus cacodendron Ehrh., Ailanthus altissima var. sutchuenensis (Dode) Rehder & E.H.Wilson, Baccharis halimifolia L., Mahonia aquifolium (Pursh) Nutt., Berberis aquifolium Pursh, Berberis aquifolium Nutt., Odostemon aquifolius (Pursh) Rydb., Lycium barbarum L., Lycium vulgare (Aiton) Dunal, Lycium floridum Salisb., Lycium halimifolium Mill., Rosa rugosa Thunb., Rosa ferox Lawrance, Acaena novae-zelandiae Kirk, Tamarix gallica L., Tamarix anglica Webb, Tamariscus gallicus (L.) All., Elaeagnus angustifolia L., Parthenocissus Planch., Parthenocissus quinquefolia (L.) Planch., Parthenocissus vitacea (Knerr) Hitchc., Parthenocissus henryana (Hemsl.) Diels & Gilg, Ampelopsis quinquefolia (L.) Michx., Parthenocissus dumetorum (Focke) Rehder, Parthenocissus quinquefolia var. hirsuta (Pursh) Planch., Parthenocissus pubescens (Schltdl.) Graebn., Ampelopsis hederacea var. dumetorum Focke, Parthenocissus tricuspidata (Siebold & Zucc.) Planch., Parthenocissus inserta (A.Kern.) Fritsch, Parthenocissus inserens Hayek, Symphoricarpos albus (L.) C.Koch, Symphoricarpos albus (L.) S.F.Blake, Symphoricarpos racemosus Michx., Symphoricarpos albus var. laevigatus (Fernald) S.F.Blake, Symphoricarpos rivularis Suksd., Symphoricarpos albus var. albus)",
 "Country is one of (United Kingdom of Great Britain and Northern Ireland, Ireland, Belgium, France, Netherlands, Portugal, Spain, Germany, Denmark)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1950",
 "BasisOfRecord is one of (Human Observation, Observation)"
 ]
}

 The dataset includes 283732 records from 831 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0142593-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17303967
title: Chemical Reaction Network for AGB Star Envelopes

description: The reaction network is based on previous networks which were applied to astrochemical models of AGB star envelopes (Frenklach 1989, Cherchneff 2012), with updated and refined kinetic parameters where possible. The current network has been expanded to include modifications and additions related to PAH growth reactions.

Network Structure

The network contains the following columns:

1 - Reaction Type



1: Gas-phase reactions with rate constants calculated by:

k(T) = A (T/300)n e-Ea/RT


17: Gas-phase reactions with rate constants calculated by:

k(T) = A Tn e-Ea/RT


11: Accretion reactions

12: Desorption reactions

18: Eley-Rideal surface reactions


2,3,4 - Reagents

Reagent #1, Reagent #2, Reagent #3

5,6,7,8 - Products

Product #1, Product #2, Product #3, Product #4

9,10,11 - Parameters

A (pre-exponential factor), n (temperature exponent), Ea (activation energy)

12 - Dual Arrhenius Flag

"1" indicates the rate constant is calculated as the sum of two Arrhenius expressions

13 - Reverse Reaction Flag

"0" indicates a reverse reaction is automatically added with rate calculated through equilibrium constant

14 - References

Source literature for the reaction

15 - Comments

Additional notes about the reaction




Notation System

A specialized notation system compatible with the BRAHMA computational framework was developed for the reaction network, adhering to the following conventions:

Basic Molecules



Small molecules and substituents (e.g., H2, H2O, CO, C2H2) retain standard chemical formulas as identifiers.


Aromatic Compounds



Aromatic moieties are denoted with the prefix a-:



Benzene: a-C6H6

Pyrene: a-C16H10



Substituents on aromatic rings are appended after the core structure (e.g., toluene: a-C6H5CH3). For multiple substituents, brackets or additional symbols may be used.


Radical Notation



The asterisk (*) distinguishes isomeric radicals based on the position of the unpaired electron:



C4*H3: Unpaired electron on an internal carbon.

C4H3*: Unpaired electron on a terminal carbon.



Compounds labeled as CxHiS in Frenklach's works are represented here as Cx*Hi, while CxHiU compounds become CxHi*.

If only one radical isomer is used, the position of the unpaired electron may be omitted.


Isomer Labeling



Structurally distinct isomers may include additional textual labels after a ! symbol for clarity:



Anthracene: a-C14H10!anth

Phenanthrene: a-C14H10!phen
DOI: 10.15468/dl.n5t8k8
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Succinea putris",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000345-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18112/openneuro.ds006206.v1.0.2
title: amri_epi
DOI: 10.15468/dl.byzb3e
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rattus rattus",
 "Country is Vanuatu",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023798-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12537903
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.j67gks
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Anolis grahami)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023801-250717081556266/datasets/export for details.
DOI: 10.15468/dl.2cuuke
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Anolis grahami)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023799-250717081556266/datasets/export for details.
DOI: 10.15468/dl.67fpxb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Anolis grahami)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023802-250717081556266/datasets/export for details.
DOI: 10.15468/dl.mscnj6
title: Occurrence Download

description: A dataset containing 271768 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Lund University Biological Museum - Zoological collections (MZLU)"
 ]
}

 The dataset includes 271768 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023796-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.