cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5427301
title: Hydrogeological mapping of heterogeneous and multi-layered ophiolitic aquifers (Mountain Prinzera, northern Apennines, Italy)

description: A few hydrogeological studies have been carried out worldwide in peridotite aquifer systems, despite their wide distribution. The ophiolites are one of the main groundwater reservoir within the northern Apennines (Italy). This paper suggests the graphical solution to set the hydrogeological map of heterogeneous, multi-layered ophiolitic aquifers mapped on large scale (1:1600). The site investigation area is an ophiolite outcrop of the External Ligurian of the northern Apennines: the Mountain Prinzera rock complex area (44°38′30″N, 10°5′E; Parma Province, Emilia-Romagna Region). The hydrogeological characteristics of the tested aquifer system do not allow setting a hydrogeological map by applying usual graphical approaches. The hydrogeological map in such complex aquifer systems will show the classic hydrogeological data but must put in evidence above all (i) the main heterogeneities of the system, from the hydraulic point of view and (ii) the modifications of groundwater scenarios and pathways over time. The hydrogeological database of Mt Prinzera aquifer was managed in ESRI ArcGIS 10.0 software.
DOI: 10.6084/m9.figshare.7258022.v1
title: Supplementary Material for: Clinical and Neurofunctional Substrates of Cognitive Behavioral Therapy on Secondary Social Anxiety Disorder in Primary Panic Disorder: A Longitudinal fMRI Study

description: Medicine
DOI: 10.17632/jsz7gydbyg
title: Data for: Primary or secondary? A dichotomy of the strontium isotope anomalies in the Ediacaran carbonates of Saudi Arabia

description: Chemostratigraphic data of the Ediacaran strata in Saudi Arabia
DOI: 10.25422/azu.data.19686555.v1
title: Data for "Hydration-Mediated G-Protein-Coupled Receptor Activation"

description: This data repository includes the follwing data. <strong>Tabulated data indicating effects on ln </strong><em><strong>K </strong></em><strong>by the small osmolytes PEG 200, PEG 300, PEG 400, PEG 600 and Sucrose.</strong> Listed are the weight percentages of each osmolyte in the sample solution, the calculated osmotic pressures. <strong>Tabulated</strong> <strong>data</strong> <strong>indicating</strong> <strong>effects</strong> <strong>on</strong> <strong>ln</strong> <em><strong>K</strong></em> <strong>by</strong> <strong>the</strong> <strong>large</strong> <strong>osmolytes</strong> <strong>PEG</strong> <strong>1000,</strong> <strong>PEG</strong> <strong>1500, PEG 2000, PEG 3000, PEG 4000</strong> <strong>and</strong> <strong>PEG</strong> <strong>6000.</strong> Listed are the weight percentages of each osmolyte in the sample, the calculated osmotic pressures. <strong>The numbers of hydrating water molecules and curvature term</strong>, reflected by a change in virial coefficient Δ<em>C </em>or change in compressibility Δ<em>κ </em>for a standard-state MI-MII transition were calculated for the response of rhodopsin to various molecular weight osmolytes. <strong>Tabulated pH</strong> <strong>titration</strong> <strong>data,</strong> where MII fractions (<em>θ</em>) are taken from the fitting of basis spectra to the experimental spectra. <strong>Tabulated p</strong><em><strong>K</strong></em><sub><strong>A</strong></sub> <strong>values and alkaline endpoints. </strong> <i>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i>
DOI: 10.17632/fprtdghsmw
title: Rainfall and runoff-sediment data sets of different geomorphic types in slope-gully system on the Loess Plateau from 1986 to 2010

description: This dataset contains observational and statistical data on runoff plots from different geomorphic types (slope, gully slope, and slope-gully system) within a typical slope-gully system on the Loess Plateau from 1986 to 2010. The runoff plots is located in Suide County, Yulin City, Shaanxi Province, and is a first-order tributary of Peijiamaogou, itself a first-order tributary of the Wuding River. Observations and statistics were conducted on the rainfall thresholds generating runoff, runoff volume, and sediment yield for different geomorphic types in the Qiaogou watershed.
DOI: 10.4121/13338518.v1
title: Data underlying: REPAiR H2020: T5.5 Catalogue of eco-innovative solutions, supplementary process schemes for Hamburg case study

description: Provided process schemes supplement the conceptual development of the catalogue of the eco-innovative solutions by providing a computational framework how the resource flow system would be changed in case the solution has been implemented. The process is modelled using the Geodesign Decision Support Environment and used during the Peri Urban Living Labs su run rapid simulations of the impacts created by the modelled solutions. Each process scheme consists of the current state and the model in which the solution is expected to change the material flows.
DOI: 10.6084/m9.figshare.21610785.v2
title: FlaPy: Mining Flaky Python Tests at Scale

description: ICSE'23 DEMO paperpreprintFlaPyConference pageAbout the artifactspypi_projects_20221112_randomSample10k+20k_overviews.tar/<b>pypi_projects_20221112_randomSample10k+20k_meta.csv</b>one row = one iterationcontains meta information about the test executions, e.g. test exeuction time<b>pypi_projects_20221112_randomSample10k+20k_to.csv</b>one row = one test casetests overview containing verdicts and flaky-status for each test case<b>flapy_input_pypi_projects_20221112_randomSample10k_containingTests.csv</b>flapy input files (1/2)<b>flapy_input_pypi_projects_20221112_randomSample20k_containingTests</b>.csvflapy input files (2/2)examples_results.zip/results a minimal flapy run on 3 projects (example from the paper)<br>
DOI: 10.6084/m9.figshare.27122478.v1
title: Network Analysis

description: These CSV files contain data extracted from the “PhD Origin and Current Affiliation of Global GIS Faculty” dataset, filtered by continent. They are prepared for creating network graphs in Gephi, including one global network graph and four continental network graphs. The focus is on faculty relationships between their PhD origin and current affiliations across different continents.
DOI: 10.6084/m9.figshare.21587430.v1
title: ERA5

description: European Centre for Medium-Range Weather Forecast’s ERA5 reanalysis dataset
DOI: 10.6084/m9.figshare.24118542.v1
title: MuriloMerlin_Data_PassingDifficulty.csv

description: The data set is referring to four official matches of the Brazilian Soccer Championship during the 2016 season. The dataset structure was composed of 465 events (passes), 35 predictor variables, and three response variables (three classes).<br>
DOI: 10.6084/m9.figshare.28448285.v3
title: code for Crop switching could synergize climate adaptation and mitigation in agriculture while meeting China’s food demand in 2050

description: <b>Crop switching; Climate adaptation and mitigation</b>
DOI: 10.17632/9wx8v7djw3
title: Data for 'A systematic study on the metallophilicity of ordered five-atomic-layer MXenes using high-throughput automated workflow and machine learning'

description: These files accompany the manuscript 'A systematic study on the metallophilicity of ordered five-atomic-layer MXenes using high-throughput automated workflow and machine learning'. In this manuscript, the metallophilicity of ordered five-atomic-layer MXenes to a total of eight kinds of metal (Li, Na, K, Mg, Ca, Fe, Zn, and Al) anodes is investigated using density functional theory (DFT) and machine learning (ML) schemes.
DOI: 10.6084/m9.figshare.16926133.v1
title: Data for MEE

description: Different models for MEE calculation
DOI: 10.6084/m9.figshare.3560040.v1
title: Appendix A. Background data and additional results for the heuristic model and observations of root dynamics in the Rock Springs Common Garden.

description: Background data and additional results for the heuristic model and observations of root dynamics in the Rock Springs Common Garden.
DOI: 10.17632/m6k2mbz74x
title: Integrated four microarrays datasets in Neural differentiation from P19 stem cells to Neural cells

description: This data focuses on the major deconstruction of the transcriptional networks that regulate cell fate determination during neural differentiation under the influence of RA signalling. In our integrated datasets, we used four different microarray datasets containing a total of 15660 genes to determine which genes were differentially expressed during neural differentiation from pluripotent stem cells (P19), among the 17 samples from four different datasets that were integrated via meta-analysis approaches. Of the 15660 gene expression in our data integration, 443 DEGs are induced during neural differentiation. Upstream dissection of these 443 DEGs revealed a network of protein-protein interactions (PPIs) from TFs and kinases, as well as intermediate proteins between them, which are indicated by three (POU51, NANOG, and FOXO1) down-expression genes and one PAX6 up-expression gene playing roles in up-stream of these 443 induced DEGs during neural differentiation. The constructed network from the PPIs database revealed that four novel sub-networks play major roles in neuron differentiation in cluster 3, retinol metabolism in cluster 4, Rap1 signalling pathways in cluster 2, and axonogenesis in cluster 6.These four clusters have revealed very useful information about how neural characterization will be created from pluripotent stem cells.
This data reveals a plethora of information on the neural differentiation process, including cell commitment and neural differentiation, and lays the groundwork for future research into particular pathways involving protein-protein interactions in neurogenesis.
DOI: 10.17632/r9dz44644w
title: Metabolite profiling characterises chemotypes of Musa diploids and triploids at juvenile and pre-flowering growth stages

description: LC-MS metabolite profiling of leaf tissue from Musa in vitro plantlets and fully grown plants at the pre-flowering stage.
Plants were grown in two consecutive years and are analysed as part I and II.
QC - quality control; ExBlk - extraction blank; solvent - methanol blank;
DOI: 10.17632/sz8ncxy2yk
title: Data for: Fractal characteristics based on different statistical objects of digital rock models
DOI: 10.17632/zndt65jb5s
title: Shakiness-QuAD

description: "ASSESSING VIDEO SHAKINESS: A NOVEL DATA AND PROTOCOLS FRAMEWORK" IEEE ICIP 2024:

Shakiness-QuAD is a dataset that investigate subjective video shakiness assessment. It contains 30 shaky videos covering relevant categories such as climbing, driving, large parallax, rotation, running, and walking, with different scenes and levels of shakiness. A pairwise comparison (PWC) was conducted, involving human observers who evaluated the perceived quality of shaky videos, and the results have been converted into quality scores using the Just-Objectionable-Differences (JOD) scaling method.
DOI: 10.6084/m9.figshare.4954202.v2
title: Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at UConn Health

description: Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at UConn Health
DOI: 10.17632/tr952fsrpx
title: CrowdWithinTaste

description: Data and code of the paper: "A simple cognitive method improving prediction for matters of taste: exploiting the wisdom-of-crowd effect within-perso"
DOI: 10.6084/m9.figshare.21989282.v1
title: Supplementary Material for: Copper Deficiency Mimicking Myelodysplastic Syndrome: Zinc Supplementation in the Setting of COVID-19

description: While copper deficiency is rare, it can have serious consequences, including pancytopenia and neuropathy. This treatable vitamin deficiency can present very similarly to myelodysplastic syndrome (MDS), a group of myeloid neoplasms which can carry devastating prognoses. Copper deficiency is an essential differential diagnosis in suspected MDS, as it can present with similar laboratory findings, bone marrow biopsy, and clinical picture. While copper deficiency has multiple potential causes, it typically occurs in patients with a predisposing gastrointestinal pathology. One possible cause of copper deficiency is zinc overload. Interestingly, zinc over-supplementation has been prevalent during the COVID-19 pandemic, as some believe that zinc can help prevent COVID-19 infection. Multiple case reports have illustrated the similarities between copper deficiency and myelodysplastic syndrome. They have also highlighted zinc over-supplementation as a potential cause. The following case report is unique in that our patient lacked gastrointestinal pathology. He still presented with the clinical and laboratory findings of MDS in the setting of copper deficiency. Further, this deficiency was caused by zinc over-supplementation in efforts to prevent COVID-19.
DOI: 10.6084/m9.figshare.6932888.v1
title: miR-146a Suppresses SUMO1 Expression and Induces Cardiac Dysfunction in Maladaptive Hypertrophy

description: <b>Table I. </b>Calcium transient and contractility parameters of cardiomyocytes infected with Ad_pre-mir-146a or Ad_decoy-146a.<b> </b> <b>Top table</b>, isolated mouse cardiomyocytes were infected with Ad_pre-mir-146a (MOI=50) for 24h. Data represent the mean ± s.e.m. in all panels (n=100-150 cells/4 hearts). <b>Bottom table</b>, isolated mouse cardiomyocytes were infected with Ad_decoy-146a (MOI=50) for 24h. Data represent the mean ± s.e.m. in all panels (n=100-150 cells/4 hearts). <b>Table II. </b>Echocardiographic parameters of mice injected with rAAV9_pre-mir-146a. Data represent the mean ± s.e.m. of cardiac functional parameters 4 weeks post-injection. <b>Table III. </b>Hemodynamic parameters of mice injected with rAAV9_pre-mir-146a.<b> </b> Data represent the mean ± s.e.m. of cardiac functional parameters 4 weeks post-injection. Max dPdt, maximum dP/dt; Min dPdt, minimum dP/dt. <b>Table IV. </b>Echocardiographic parameters of mice injected with rAAV9_decoy-146a.<b> </b> Data represent the mean ± s.e.m. of cardiac functional parameters 4 weeks post-injection. <b>Table V. </b>Hemodynamic parameters of mice injected with rAAV9_decoy-146a.<b> </b> Data represent the mean ± s.e.m. of cardiac functional parameters 4 weeks post-injection. <b>Table VI. </b>Echocardiographic parameters of SUMO1 TG mice injected with rAAV9_pre-mir-146a.<b> </b> Data represent the mean ± s.e.m. of cardiac functional parameters 8 weeks post-injection. NL, Negative littermate; SUMO1 TG, Cardiac-specific Cre/loxP-conditional <i>Sumo1</i>-transgenic mice<b>Table VII. </b>Cardiac cellular composition. Isolated cardiac cells were sorted with FACS and analyzed. Data represent the mean ± s.e.m. (n=5).
DOI: 10.6084/m9.figshare.25533064.v2
title: Chromosome-level genome assembly and annotation of xerophyte secretohalophyte Reaumuria soongarica

description: Chromosome-level genome assembly and annotation of xerophyte secretohalophyte Reaumuria soongarica
DOI: 10.6084/m9.figshare.5667733.v1
title: Host-seeking behavior of the Heterorhabditis amazonensis nematode in response to stimulant sources1

description: ABSTRACT Several species of entomopathogenic nematodes have different host-seeking methods, and could be considered as "ambusher" or "cruiser". These differences may depend on how the nematodes detect the volatile signals used as cues for foraging. This study aimed to evaluate the locomotor response of Heterorhabditis amazonensis RSC5 to the compounds from root exudates of different plants, as well as to stimulants produced by the presence of insects or to the feeding activity of insects on plants. Arenas with agar-water substrates, containing root exudates from corn, bean, soybean, cucumber, garlic and tomato seedlings, were assembled to determine the substrates possibly preferred by H. amazonensis.Arenas with sand were also constructed to include, besides the seedling root exudates, treatments containing Spodoptera frugiperda, garlic seedlings and S. frugiperda feeding on garlic seedlings. The H. amazonensis species was attracted to the volatile chemicals emitted by all the root exudates tested, especially the exudate from garlic seedlings. However, it showed the greatest attraction to the combination of garlic seedlings and S. frugiperda, indicating that the search of H. amazonensis for its host is enhanced by the association between the insect and the volatile chemical compounds produced by plants, when attacked by insects.
DOI: 10.6084/m9.figshare.16917337.v1
title: A probability-based approach for the analysis of large-scale RNAi screens

description: This is the companion web site for publication:<br>König R, Chiang CY, Tu BP, Yan SF, DeJesus PD, Romero A, Bergauer T, Orth A, Krueger U, Zhou Y, Chanda SK. A probability-based approach for the analysis of large-scale RNAi screens. Nat Methods. 2007 Oct;4(10):847-9. doi: 10.1038/nmeth1089. Epub 2007 Sep 9. PMID: 17828270.<br><br>Download and unzip the file, open RSA/index.html to browse the self-contained web site.<br>
DOI: 10.6084/m9.figshare.28039868.v1
title: Data_Article_Behavior and evolution in the global coffee market.xlsx

description: Data of coffee
DOI: 10.6084/m9.figshare.3530102.v1
title: Appendix B. Methods used for and results of bulk density measurements and changes due to treatment effects.

description: Methods used for and results of bulk density measurements and changes due to treatment effects.
DOI: 10.6084/m9.figshare.3557538.v1
title: Appendix A. Map of the Big Sur study region with monitoring plot locations and fire perimeters.

description: Map of the Big Sur study region with monitoring plot locations and fire perimeters.
DOI: 10.17632/bmv9kxkzg3
title: FaVAD: A software workflow for characterization and visualizing of defects in crystalline structures

description: The analysis of defects and defect dynamics in crystalline materials is important for fundamental science and for a wide range of applied engineering. With increasing system size the analysis of molecular-dynamics simulation data becomes non-trivial. Here, we present a workflow for semi-automatic identification and classification of defects in crystalline structures, combining a new approach for defect description with several already existing open-source software packages. Our approach addresses the key challenges posed by the often relatively tiny volume fraction of the modified parts of the sample, thermal motion and the presence of potentially unforeseen atomic configurations (defect types) after irradiation. The local environment of any atom is converted into a rotation-invariant descriptive vector (‘fingerprint’), which can be compared to known defect types and also yields a distance metric suited for classification. Vectors which cannot be associated to known structures indicate new types of defects. As proof-of-concept we apply our method on an iron sample to analyze the defects caused by a collision cascade induced by a 10 keV primary-knock-on-atom. The obtained results are in good agreement with reported literature values.
DOI: 10.6084/m9.figshare.14280773.v1
title: Postpartum care for women in primary care: building an assessment model

description: Postpartum care for women in primary healthcare (PHC) is important for reducing their morbimortality, but there is no clearly described theory on such care, and the assessment studies are rare. This study aimed to develop and systematize an assessment model for women’s postpartum care in PHC, verifying it evaluability. An evaluability study was performed using a Brazilian and international literature review, review of national documents, and interviews with stakeholders. Such evidence backed the elaboration of an assessment model that was validated in a consensus workshop. The data were analyzed with thematic analysis. The study elaborated the program’s theory, in which postpartum care in PHC ideally takes place with a comprehensive approach to the woman’s physical, psychological, emotional, and social needs, considering the individuality of women with liveborn children or in situations of fetal/neonatal death, initiating prenatal care and continuity in the postpartum period, and with the involvement of spouses and other family members. The program’s theory established the program’s contextualization and logical design, with objectives, targets, activities, outputs, results, and impact, previously not explained systematically in the literature and documents. Postpartum care was found to be evaluable through an implementation analysis, and the program’s theory was defined, with the potential for use by various stakeholders at both the national and international levels to implement and/or improve comprehensive postpartum care for women.
DOI: 10.17632/zsc6wrskxg
title: Data for: Insights into intragranular precipitation and toughening effect of W in (Ti, W)C solid solution with TiH2 as the inducer

description: Fig. 1 XRD patterns (A) in a 2θ range of 30 to 80o and enlarged patterns (B) in a 2θ range of 70 to 80o for a) (Ti,W)C powder, b) (Ti,W)C ceramic and c-g) (Ti,W)C-W composites sintered at different temperatures of 1300 oC, 1400 oC, 1500 oC, 1600 oC and 1700 oC, respectively. Fig. 2 SEM images of (Ti,W)C-W composites obtained at different temperatures a) 1300 oC, b) 1400 oC, c) 1500 oC, d) 1600 oC, e)1700 oC, and f) (Ti,W)C solid solution ceramic sintered at 1700 oC. Fig. 3 TEM morphology of (Ti,W)C-W composite fabricated at 1700 oC for 1 h: a) TEM morphology, b) HRTEM image of the interface between the matrix and the precipitation corresponding to zone 3, c) selected area electron diffraction pattern (SAED) of zone 1, d) selected area electron diffraction pattern (SAED) of zone 2 and e) EDS analyses of zone 1 and zone 2 Fig. 4 SEM morphologies of the cross-section showing the interface beween (Ti, W)C solid solution and Ti bulk after heating at 1500 oC for 60min: a) cross section; b–d) enlarged views of different regions of zone 2, zone 5 and the whole interface from zone 1 to zone 5, respectively. Fig. 5 Interfacial morphologies and line scan analyses of Ti, W and C across the interface from (Ti, W)C solid solution to Ti bulk after heat treatment at 1500 oC for 60 min. Fig. 6 Elemental distribution mapping of C, W and Ti across the interface between (Ti, W)C and Ti. Fig. 7 XRD pattern of interface between (Ti, W)C solid solution and Ti bulk. Fig. 8 The cross-section showing the interface between (Ti,W)C solid solution and Ti bulk after heat treatment at 1500 oC and 1800 oC Fig. 9 A simplified schematic of precipitation process in (Ti, W)C-W composite
DOI: 10.6084/m9.figshare.28416827.v1
title: Global phytopathogenic bacteria

description: This study investigates the biogeography and diversity of phytopathogenic bacteria in global soils
DOI: 10.6084/m9.figshare.28757198.v1
title: KP99-N-evoC-778025_S9_L006_I2_001.fastq.gz

description: 1111