cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14543520
title: DYNLT1 Deficiency Induces Atrial Fibrillation: Insights into Cardiac Remodeling and Molecular Mechanisms

description: Atrial fibrillation (AF) is a prevalent arrhythmia characterized by high morbidity and mortality, yet its molecular underpinnings remain poorly understood. This study investigates the role of DYNLT1 in AF by generating a DYNLT1-knockout (KO) mouse model via CRISPR/Cas9 technology. Molecular analyses revealed significant disruptions in key pathways, including reduced expression of gap junction proteins connexin 40 and 43, increased cardiomyocyte apoptosis as indicated by TUNEL staining, and heightened inflammatory responses characterized by elevated IL-6, CRP, and TNF-α levels. These molecular changes were accompanied by structural remodeling, including atrial enlargement and fibrosis, as demonstrated by histological analyses and echocardiography. Electrocardiographic recordings showed prolonged PR intervals, irregular RR intervals, and reduced P-wave amplitude, confirming electrophysiological remodeling. Pharmacological testing highlighted the model’s sensitivity to antiarrhythmic drugs such as amiodarone and propafenone, which effectively restored sinus rhythm. These findings establish DYNLT1 as a key regulator in AF pathogenesis and underscore the KO mouse model as a valuable tool for exploring the molecular and cellular mechanisms of AF and for screening potential therapeutic agents.
DOI: 10.5281/zenodo.15553335
title: Measurements of lotka volterra parameters in function of temperature, drought and interactions

description: Data providing measurements of Lotka Volterra parameters (mu and alpha) in function of temperature, drought and interactions, measured in mono- and coculture experiments of fungal species isolated from heathland soil.
DOI: 10.5281/zenodo.16378228
title: Supplementary data for "Revisiting the Oxygen Fugacity of Martian Meteorites: Implications for the Redox History of the Mantle of Mars"
DOI: 10.5281/zenodo.15531395
title: Dataset of Global Climate- and Planetary-Health Competency Frameworks in Medical Education

description: This dataset provides a comprehensive overview of competency frameworks related to climate and planetary health in undergraduate and graduate medical education. Developed as part of the scoping review titled "Medical Education Competency Frameworks for Climate and Planetary Health: A Scoping Review," the dataset includes detailed information on 12 consensus-level competency frameworks developed by medical organizations, academic consortia, and national regulatory bodies between 2010 and 2024. These frameworks were identified through systematic searches of peer-reviewed and gray literature sources, and reflect emerging global efforts to integrate climate health competencies into physician training.Each framework was coded for its source organization, country of origin, overlap with existing curricular requirements, and inclusion of key climate-health domains. The data capture the presence or absence of competencies across thematic areas such as foundational medical knowledge, climate-informed clinical skills, communication, professionalism, advocacy, systems-based practice, sustainability, health equity, and Indigenous or nature-based knowledge. Frameworks were drawn from diverse sources including the General Medical Council (UK), Australian Medical Council, Planetary Health Report Card, the Global Consortium on Climate and Health Education, and others. Data synthesis included tabulation of framework characteristics (Table 1), competency domains (Table 2), and a comparative matrix of competencies in medical versus public health institutions (Table 3), with further elaboration in Appendix A.1The dataset supports further research in curriculum development, comparative education studies, and competency-based assessment in climate and planetary health. It is well-suited for researchers, educators, policymakers, and accrediting bodies seeking to benchmark existing efforts, identify gaps in current frameworks, or build consensus on global educational standards in climate-health education. The dataset is publicly reusable under academic attribution guidelines and may inform future development of competency blueprints, faculty development modules, and institutional readiness assessments.
DOI: 10.5281/zenodo.14999348
title: Soundscape Experience Mapping Pilot Data
title: Sound Wellbeing in Later Life Study Data

description: This dataset contains materials from a pilot study exploring sound, memory, and well-being, with a particular focus on older adults. The study employed multiple data collection methods including cultural probes, Ecological Momentary Assessment (ESM), and Day Reconstruction Method (DRM) style reporting. The protocol used to gather the data is described here: https://zenodo.org/records/14946672

The dataset includes:



Audio-visual data from ESM tasks (AVData.zip)

Survey responses in both English and Dutch-Belgian (NL-BE) formats, including pre/post assessments

Task completion data from various activities including:



Soundscape assessments

Object association exercises

Memory recall activities

Sound journaling tasks



Workshop materials and documentation, including facilitator notes and participant feedback


The research aimed to inform the design of soundscape control and reminiscence technologies to improve well-being and support engagement with sonic memories. All data collection tools were deployed through the Ethica EMA smartphone app (later renamed to "Avicenna Research").

Data collection followed a systematic naming convention where files are categorised by type (e.g., MATERIAL, SURVEY, TASK, WORKSHOP) with language indicators (EN, NL-BE) and appropriate file extensions, naming convention described here: https://zenodo.org/records/14946672 (DocumentMap.md).
DOI: 10.15468/dl.pufk84
title: Occurrence Download

description: A dataset containing 2171 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Convolvulus elegantissimus"
 ]
}

 The dataset includes 2171 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014585-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13739994
title: PhD thesis Gijs Selten - Supplementary data

description: This repository contains the Supplementary data of the experimental chapters published in the PhD thesis of Gijs Selten MSc. 

Chapter 2 - Functional capacities drive recruitment of bacteria into plant root (already online on bioRxiv --> https://www.biorxiv.org/content/10.1101/2024.08.22.609090v1.article-info)



Supplementary data

Supplementary tables


Chapter 3 - Key genetic components for bacterial success in complex communities revealed using comparative metagenome analysis



Supplementary data

Orthogroup profiles of SynCom members

Figures S7 and S9 (close-up) 


Chapter 4 - SyFi: generating and using sequence fingerprints to distinguish SynCom isolates



SyFi bash script

Supplementary data:



Microbiome tables - SyFi (minscorefraction 65, 75, 85, 95 (original), and 100%), Salmon directly on amplicons, Qiime2-VSEARCH (95, 97, 98, 99, 100% match), shotgun metagenomics table

Percentages mapped reads

16S copy number

VSEARCH clustering results



16S fingerprints

16S V3V4 fingerprints

16S V5V7 fingerprints

16S original sequences

16S V3V4 original sequences

16S V5V7 original sequences


Chapter 5 - Bacillus: driver of distinct functional states in plant root bacterial synthetic communities 



Supplementary data

Supplementary tables

Jaccard Distance matrix on isolate composition

Jaccard Distance matrix on genus composition

Jaccard Distance matrix on KO composition

Bray Curtis Distance matrix on isolate composition

Bray Curtis Distance matrix on genus composition

Bray Curtis Distance matrix on KO composition
DOI: 10.5281/zenodo.8327373
title: Codebook Motif Explorer Supplementary Dataset

description: This is the supplementary dataset of the GRECO-BIT/Codebook Motif Explorer (MEX),
which is a detailed online catalog of DNA motifs built using a huge collection of experimental data 
produced by the Codebook Consortium to annotate the binding specificities of human transcription 
factors. 


Motif discovery for MEX was performed with multiple software tools, and the resulting motifs were 
rigorously benchmarked against held-out test data. Here you can find detailed benchmarking results, 
complete motif sets, and the benchmarking-ready preprocessed experimental data. 


Further details are provided in README.


Note: There are two extra accompanying Zenodo datasets, namely,
doi:10.5281/zenodo.8327477 (MEX HT-SELEX data) and doi:10.5281/zenodo.8327970 (MEX GHT-SELEX data).
DOI: 10.5281/zenodo.13625763
title: Minerals_Natural History Museum of London_Heuland_donator

description: Database: reconstruction of Forster and Heuland mineralogical collections-Natural History Museum of London
DOI: 10.5281/zenodo.15005001
title: Mi Dataset de Prueba

description: Este es un dataset de prueba.
DOI: 10.5281/zenodo.15545405
title: Data for: Holocene land-use and climate forcing of ombrotrophic peatland dynamics in northwest Estonia

description: This upload contains the plant macrofossil, pollen, testate amoebae, charcoal, organic matter content, bulk density, and carbon accumulation for the study "Holocene land-use and climate forcing of ombrotrophic peatland dynamics in northwest Estonia". Data collected from a core from an ombrotrophic peatbog, Mustjärve (59°04'44" N 24°06'42" E), Estonia.
DOI: 10.5281/zenodo.15726897
title: Ancestral P-body proteins rewired for autophagic recycling in the early land plant Marchantia polymorpha

description: This is all the raw data associated with figures presented in the manuscript.
DOI: 10.5281/zenodo.15059174
title: All-Diamond Boron-Doped Microelectrodes for Neurochemical Sensing with Fast-Scan Cyclic Voltammetry

description: Datasets used in the manuscript titled: "All-Diamond Boron-Doped Microelectrodes for Neurochemical Sensing with Fast-Scan Cyclic Voltammetry" are uploaded here.

 

Data contents:

Figure 2

·         Data for slowscan DA, FcCOOH, and RuHex. File types are .bin, opened with CHInstruments potentiostat software.

Figure 3

·         FSCV calibration curve for DA and 5-HT. Data can be opened with HDCV available from UNC.

Figure 4

·         FSCV measurements for DA and 5-HT. Data can be opened with HDCV available from UNC.

SI-1

·         Impedance and CV data can be open with CHInstruments potentiostat software, and CV data can be opened with notepad.

SI-2

·         FSCV data of DA can be opened with HDCV from UNC

SI-3

·         FSCV data of pH can be opened with HDCV from UNC

SI-4

·         Raman data of BDD. Data can be opened with Renshaw analysis software

SI-5

·         FSCV calibration response of DOPAC, AA, and H2O2. Data can be opened with HDCV from UNC.

SI-7

·         In vivo data of BDDME in glass. Data can be opened with HDCV from UNC.

 

Table 1

·         Calculations for the electron transfer coefficient. Data can be opened with Excel.
DOI: 10.5281/zenodo.16117153
title: PLC CWDM Wafer Fabrication Measurements

description: This dataset contains fabrication measurements from 2,790 wafers used to create coarse wavelength-division multiplexing (CWDM) planar lightwave circuit (PLC) devices. Each record corresponds to a specific wafer, fabrication operation, and parameter, with measurements captured across five spatial wafer regions: left, top, center, bottom, and right.

The data includes operation metadata (e.g., layer, ID, name), parameter categories (e.g., ETCH_DEPTH, LAYER_THICKNESS), and temporal alignment using date_idx, min_date_idx, and max_date_idx.

It supports research in spatiotemporal modeling, yield analysis, and fabrication excursion detection.
DOI: 10.5281/zenodo.16118037
title: PLC CWDM Chip Test Measurements

description: This dataset contains 16,501,626 records from chip-level testing of 2,790 wafers used in CWDM planar lightwave circuit (PLC) devices. Each record corresponds to a specific chip and test parameter, with five total measurements per test: four per-channel values (channel_1 to channel_4) and one spatial mean (parameter_value). This results in over 82 million total measurement values across all chips.

Chip metadata includes wafer_name, wafer_region, row, column, and chip_location, along with test type, parameter category, and scope. Parameters cover optical properties such as insertion loss (IL), axis alignment (AX/NAX), and polarization behavior.

Temporal alignment is handled using date_idx and event bounds (min_date_idx, max_date_idx), enabling correlation with fabrication conditions.

This dataset supports spatiotemporal yield modeling, failure analysis, and fabrication-to-test traceability.
DOI: 10.5281/zenodo.15685789
title: 52 Orbital Meteorites

description: This dataset was used within the paper Shober et al. (2025) MAPS
DOI: 10.5281/zenodo.15299339
title: Free tropospheric nitrogen dioxide concentrations from cloud-slicing TEMPO
DOI: 10.5281/zenodo.15322679
title: A Dietary Supplement Taurine Inhibits ApoE4 Aggregation and Ameliorates Alzheimer's Disease Pathophysiology

description: MD simulations by Sergio Marques

VAMP analysis of MD simulations by Jakub Kopko
DOI: 10.5281/zenodo.13798894
title: Lung-delivered IL-10 Mitigates Lung Inflammation Induced by Repeated Endotoxin Exposures
DOI: 10.5281/zenodo.14151997
title: Lung-delivered IL-10 Mitigates Lung Inflammation Induced by Repeated Endotoxin Exposures

description: Supplementary material and raw data for "Lung-delivered IL-10 Mitigates Lung Inflammation Induced by Repeated Endotoxin Exposure"

Aaron D. Schwab, Todd A. Wyatt, Oliver W. Schanze, Amy J. Nelson, Angela M. Gleason, Michael J. Duryee, Deanna D. Mosley, Geoffrey M. Thiele, Ted R. Mikuls, and Jill A. Poole

Content:



Supplementary material to the paper

Raw data repository
DOI: 10.5281/zenodo.15747923
title: Dataset repository

description: This dataset is associated to the paper:

Spatial and Temporal Variability in Tide-induced Icequake Activity at the Astrolabe Coastal Glacier, East Antarctica 

Tifenn Le Bris1, Guilhem Barruol1, Florent Gimbert1, Emmanuel Le Meur1, Dimitri Zigone2,4, Anuar Togaibekov1, Denis Lombardi3, Maxime Bès de Berc2, Armelle Bernard4 



Univ. Grenoble Alpes, CNRS, INRAE, IRD, Grenoble INP, IGE, 38000 Grenoble, France

Université de Strasbourg/CNRS, Institut Terre et Environnement de Strasbourg, UMR7063, 67084 Strasbourg Cedex, France

SEISTREAM, Versailles, France

Université de Strasbourg/CNRS, Ecole et Observatoire des Sciences de la Terre, UAR830, 67084 Strasbourg Cedex, France


Corresponding author: Tifenn Le Bris (tifenn.le-bris@univ-grenoble-alpes.fr)

This repository contains all relevant materials for the study, including:



Icequake data: Detection times, count of events, durations, and event locations.

Figure scripts: Python scripts used to generate the main figures presented in the paper, ensuring full reproducibility.

Station information: Coordinates of seismic and GNSS stations, including dense node arrays and OBS deployments.
DOI: 10.15468/dl.aawefh
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leptachirus darwinensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014586-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yfe4r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eruca vesicaria sativa"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014587-250827131500795/datasets/export for details.
DOI: 10.15468/dl.38emph
title: Occurrence Download

description: A dataset containing 650 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helichrysum stoechas barrelieri"
 ]
}

 The dataset includes 650 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014588-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rzkakn
title: Occurrence Download

description: A dataset containing 962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Coleocephalocereus"
 ]
}

 The dataset includes 962 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014589-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dg4bn3
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cobitis narentana)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 40 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014590-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57yqh2
title: Occurrence Download

description: A dataset containing 1738 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lamium amplexicaule amplexicaule"
 ]
}

 The dataset includes 1738 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014591-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dt3ude
title: Occurrence Download

description: A dataset containing 1330 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liometopum apiculatum"
 ]
}

 The dataset includes 1330 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014592-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tdpesx
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Glaniopsis denudata)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014594-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7hx86z
title: Occurrence Download

description: A dataset containing 1888 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scandix australis australis"
 ]
}

 The dataset includes 1888 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014593-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbxd6p
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stachys cretica cretica"
 ]
}

 The dataset includes 221 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014595-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.es5u2d
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aphyosemion striatum)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014596-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25888702.v1
title: A highly accurate risk factor-based XGBoost multiethnic model for identifying patients with skin cancer

description: All work done in All Of Us (AoU) Researcher Workbench:cancer.extract_data.ipynb obtains the data from the AoU OMOP databasecancer.clean_data.ipynb refines the data (re-annotates ancestry, calculate age, reannotates survey data)cancer.analysis_epidemiology.ipynb performs the analyses and predictionscancer.skin_cancer_predictor.manuscript_prepare_data.ipynb prepares the data for figures and tablescancer.skin_cancer_predictor.manuscript.ipynb generates figures and tables for the manuscriptcancer.analysis_epidemiology.all_current_date.ipynb performs the predictions using current date for all individuals<br>
DOI: 10.6084/m9.figshare.25888702
title: A highly accurate risk factor-based XGBoost multiethnic model for identifying patients with skin cancer

description: All work done in All Of Us (AoU) Researcher Workbench:cancer.extract_data.ipynb obtains the data from the AoU OMOP databasecancer.clean_data.ipynb refines the data (re-annotates ancestry, calculate age, reannotates survey data)cancer.analysis_epidemiology.ipynb performs the analyses and predictionscancer.skin_cancer_predictor.manuscript_prepare_data.ipynb prepares the data for figures and tablescancer.skin_cancer_predictor.manuscript.ipynb generates figures and tables for the manuscriptcancer.analysis_epidemiology.all_current_date.ipynb performs the predictions using current date for all individuals<br>
DOI: 10.15468/dl.v2dafk
title: Occurrence Download

description: A dataset containing 4860 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tragopogon porrifolius porrifolius"
 ]
}

 The dataset includes 4860 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014597-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6qkpr
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plagioscion ternetzi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 38 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014598-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.