cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12770018.v1
title: Data used to estimate population growth and phenotypic plasticity from Leung et al (2020) Ecology Letters

description: This data accompanies our 2020 publication in <i>Ecology Letters</i> titled, "<i>Reduced phenotypic plasticity evolves in less predictable environments</i>".<br>If you use these datasets, please cite the paper as well as this dataset. Please see the paper for a detailed description of the data and analysis.<br>"data1_Pop_size_All.txt": <b><br></b><b>Dataset 1. Population size during the plasticity assay.</b> For each population, their origin (evolved lines or isogenic populations), strain (A for CCAP 19/12 and C for CCAP 19/15), expected and actual autocorrelation (rho), salinity, day post transfer and population size (cells x ml<sup>-1</sup>) are given.<br>"data2_Calibrating_beads.txt": <b><br></b><b>Dataset 2. Calibrating beads.</b> Flow cytometry parameter (FSC, SSC and Red_B) values for beads in three different salinity.<br>"data3_Raw_Data_Morpho.txt": <b><br></b><b>Dataset 3. Cell morphology raw data. </b>Flow cytometry parameters (FSC, SSC and Red_B) were given for up 150 cells for each populations. Their origin (evolved lines or isogenic populations), strain (A for CCAP 19/12 and C for CCAP 19/15), expected and actual autocorrelation (rho), salinity, and day post transfer are specified. <br>
DOI: 10.6084/m9.figshare.28238774.v1
title: Dataset

description: This study investigated the role of predictive processing (PP) in shaping olfactory perception within a virtual reality (VR) setting by manipulating participants' short term prior expectations of olfactory cues. The results revealed a significant difference between the manipulation and control groups regarding reported olfactory sensations, with participants in the manipulation group rating olfactory realism significantly higher than those in the control group. Those in the manipulation group described detailed scents related to the VR experience in the 360° amazonian jungle, after implemented with the believe that the experiment condition had actually modelled olfaction. These findings provide empirical support for the PP framework in the olfactory modality, demonstrating that short-term expectation manipulations can influence sensory experiences.
DOI: 10.15482/usda.adc/1409053
title: USDA National Nutrient Database for Standard Reference Dataset for What We Eat In America, NHANES (Survey-SR)
DOI: 10.17632/78hbxm34s4
title: Prebiotic cocoa bean shell data

description: The data contains all the data that shows the dynamics of the population and the pH on raw CBS, its fiber and MRS culture media, in in-vitro testing, to evaluate the capacity of CBS to support the growth of probiotics.
DOI: 10.17866/rd.salford.28892471.v1
title: Full Toolkit Resources (Zip file)

description: The full toolkit provides access to editable templates and resources.
DOI: 10.6084/m9.figshare.13285913.v1
title: Dataset for Kohli et al_2020_Foliar fungi and plant diversity drive ecosystem carbon fluxes in experimental prairies

description: This dataset contains data to support and reproduce results presented in Kohli et al (2020) published in Ecology letters. Please see the readme file before using the data, and please see the methods section of the manuscript for more details.
DOI: 10.6084/m9.figshare.23592666.v2
title: Optimization of global-scale groundwater recharge modeling by taking into account ground-based estimates for karst and non-karst areas

description: 1. Global ground-based GWR estimates allocated to the 0.5º by 0.5º grid cells of WaterGAP, including 64 estimates from karst studies and the rest for non-karst areas.2. The six major datasets used for compiling the ground-based GWR estimates dataset, including (1) Moeck et al. (2020), (2) Mohan et al. (2018), (3) Scanlon et al. (2006), (4) Döll & Fiedler (2008), (5) MacDonald et al. (2021), and (6) Hartmann et al. (2015).3. The updated global 0.5° cell GWR, karstification fraction, relief-, soil texture-, hydrogeology-, and permafrost/glacier-related factors, and GWR per grid cell for two different climate inputs: GSWP3-W5E5 and GSWP3-ERA5.
DOI: 10.6084/m9.figshare.28719077.v1
title: Supplemental Data for Babicheva et al. "Store-operated Ca2+ entry is involved in endothelium-to-mesenchymal transition in lung vascular endothelial cells"

description: Endothelial-to-mesenchymal transition (EndMT) is a biological process that converts endothelial cells to mesenchymal cells with increased proliferative and migrative abilities. EndMT has been implicated in the development of pulmonary vascular remodeling in pulmonary arterial hypertension (PAH), a fatal and progressive lung vascular disease. Transforming growth factor β<sub>1</sub> (TGF-β<sub>1</sub>), an inflammatory cytokine, is known to induce EndMT in many types of endothelial cells including lung vascular endothelial cells (LVEC). An increase in cytosolic free Ca<sup>2+</sup> concentration ([Ca<sup>2+</sup>]<sub>cyt</sub>) is a major stimulus for cellular proliferation and phenotypic transition, but it is unknown whether Ca<sup>2+</sup> signaling is involved in EndMT. In this study we tested the hypothesis that TGF-β<sub>1</sub>-induced EndMT in human LVEC is Ca<sup>2+</sup>-dependent. Treatment of LVEC with TGF-β<sub>1</sub> for 5-7 days resulted in increase in SNAI1/2 expression, induction of EndMT, upregulation of STIM/Orai1 and enhancement of store-operated Ca<sup>2+</sup> entry (SOCE). Removal (or chelation) of extracellular or intracellular Ca<sup>2+</sup> with EGTA or BAPTA-AM respectively abolished EndMT in response to TGF-β<sub>1</sub>. Moreover, EGTA diminished TGF-β<sub>1</sub>-induced increase in SNAI in a dose-dependent manner. Knockdown of either STIM1 or Orai1 was sufficient to prevent TGF-β-mediated increase in SNAI1/2 and EndMT, but did not rescue the continuous adherent junctions. Blockade of Orai1 channels by AnCoA4 inhibited TGF-β-mediated EndMT and restored PECAM1-positive continuous adherent junctions. In conclusion, intracellular Ca<sup>2+</sup> signaling plays a critical role in TGF-β-associated EndMT through enhanced SOCE and STIM1-Orai1 interaction. Thus, targeting Ca<sup>2+</sup> signaling pathways regulating EndMT may be a novel therapeutic approach to treat PAH and other forms of pre-capillary pulmonary hypertension.
DOI: 10.6084/m9.figshare.3113449.v1
title: Character classification data for license plates

description: <b>Licence Plate Character Classification Data</b><br><br>Authors:<br>Rohit Rawat, Dr. M. T. Manry, Fernando Martinez<br>Image Processing and Neural Networks Lab<br>The University of Texas at Arlington<br>http://www.uta.edu/faculty/manry/<br><br>This dataset has 49 numerical features extracted from character images extracted from license plate images. The dataset has 12757 images extracted from plate images split into training and testing sets. The data has 36 output classes belonging to letters 'A' to 'Z' excluding the characters 'O' and 'Q', numbers '0' to '9', and two state map characters.<br><br>Data is tab separated, one line per example, with the correct class between 1 and 36 at the end of the line.<br><br>This data should be cited as:<br>Rawat, Rohit; Manry, M.T.; Martinez, Fernando (2016): Character classification data for license plates. figshare. https://dx.doi.org/10.6084/m9.figshare.3113449.v1<br><br>
DOI: 10.6084/m9.figshare.9751730.v1
title: Supplementary Material for: Comparison of Different Selection Strategies for Tolvaptan Eligibility among Autosomal Dominant Polycystic Kidney Disease Patients

description: <b><i>Background:</i></b> Tolvaptan can slow down renal function decline in autosomal dominant polycystic kidney disease (­ADPKD). While there is consensus across international recommendations that the drug should only be used in patients with high risk of rapid progression, identification criteria for rapid progression vary. Here, we investigated different assessment strategies using a real-life ADPKD cohort. <b><i>Methods:</i></b> Observational retrospective cohort analysis. The study included 131 ADPKD patients aged 19–78 years who were referred to the Hannover Medical School outpatient clinic for evaluation of tolvaptan treatment. Six different assessment strategies for tolvaptan eligibility were tested for each patient. Comparative analysis for different assessments was performed in the total study population, the subpopulation with available computed tomography/magnetic resonance imaging data, and the genotyped subpopulation. <b><i>Results:</i></b> Comparing 6 assessment strategies revealed strong variations in the individual selection processes resulting in treatment recommendations for 14.5–64.9% of patients. The highest patient number was selected by the Scottish and the lowest by the Japanese approach. Few patients had positive recommendations by all 6 systems, but strong congruency was observed between the Scottish, U.K. and Canadian patient selection. The lowest number of overlapping patients was found between the Japanese and the ERA-EDTA selection. Important discrepancies were also found between the ERA-EDTA and the U.S. system due to different emphases on parameters of kidney function versus kidney volume. Limitations of the study included the restricted sample size, heterogeneity in parameter availability and lack of outcome data. <b><i>Conclusions:</i></b> The study draws attention to important discrepancies between different decision algorithms for tolvaptan eligibility in ADPKD patients.
DOI: 10.6084/m9.figshare.c.3662366_d801.v1
title: Full body CT scan of a Squatina squatina (ZMA.PISC.115140)

description: This file includes 2207 DICOM files of a male Squatina squatina specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.115140. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.10731107.v1
title: MOESM1 of Genome-wide identification and transcriptome profiling reveal that E3 ubiquitin ligase genes relevant to ethylene, auxin and abscisic acid are differentially expressed in the fruits of melting flesh and stony hard peach varieties

description: Additional file 1: Table S1. The characteristics of E3 ligase genes in peach. (XLSX 97 kb). Table S2. The distribution of introns among different PpE3s. (XLSX 10 kb). Table S3. Chromosomal distribution of different PpE3 subfamilies in peach. (XLSX 11 kb). Table S4. Prevalence of duplication modes in the PpE3 subfamilies. (XLSX 40 kb). Table S5. Domain structure of predicted PpE3 ligase proteins in different subfamilies. (XLSX 108 kb). Table S6. The statistical analysis of data by transcriptome sequencing (XLSX 14 kb). Table S7. Fold changes in PpE3 ligase gene expression between MF and SH peach fruits at the same stage of ripening. (XLSX 96 kb). Table S8. Primers used in qRT-PCR. (XLSX 14 kb).
DOI: 10.6084/m9.figshare.13713541.v1
title: 5HTPLRR PTSS .sav.pdf

description: A dataset regarding 145 breast cancer outpatinets who completed the Impact of event scale (IES), Paykel Life Events Interview to evaluate the presence of stressful life events (SLE) and the Problem Checklist to assess cancer related, not emotional problems.
DOI: 10.6084/m9.figshare.28303637.v1
title: Mouse micro-CT raw data for segmentation

description: Raw cardiac micro-CT files from 8 training and 5 validation mice for machine learning. Files are in .nii format.
DOI: 10.6084/m9.figshare.29035766.v1
title: RAST.xls

description: Eramic 25 genome annotation using RAST
DOI: 10.17632/44wxbds28t
title: Supply Chain Team Formation Data Model

description: Informed by the analysis of the stakeholders’ requirements and feedback, and the collaborative supply chain context about the team formation process, the dataset shows a model presenting the requirements for a supply chain team formation in Industry 4.0 collaborative supply chains including a call-for-tenders (CfT) (demand), company data (supply), team data (collaboration), and tasks assignments data (who is doing what).
DOI: 10.6084/m9.figshare.11574150.v1
title: MOESM1 of Highly specific PCR-RFLP assays for karyotyping the widespread 2Rb inversion in malaria vectors of the Anopheles gambiae complex

description: Additional file 1: Table S1. Detailed genotypic concordance between cytological karyotype and individual PCR-RFLP genotyping assay.
DOI: 10.6084/m9.figshare.12768059.v1
title: Larvicidal, but not ovicidal, activity of chlorantraniliprole on the potato tuber moth Tecia solanivora (Lepidoptera: Gelechiidae)

description: In this study, we evaluated the toxic effect of chlorantraniliprole against early immature stages of T. solanivora<br>
DOI: 10.6084/m9.figshare.22649623.v1
title: Check List of Birds in Toyama Prefecture

description: A comprehensive survey of the literature on birds in Toyama Prefecture was conducted, and a new catalog of birds recorded in the past in Toyama Prefecture was created. Based on the Toyama Prefecture Bird List published by the Wild Bird Society of Japan (2022), books published in and outside the prefecture that are widely distributed, papers published in academic journals, and published under the responsibility of wild bird-related organizations I used the journal of the association. As a result, records of 356 native species of 68 families of 22 orders of birds were confirmed. In addition, 5 species of alien species were recorded, and 361 species of birds were recorded in Toyama Prefecture. This catalog is a compilation of literature published in the form of general circulation by people who have observed wild birds in Toyama Prefecture in the past. Since there are some species that could not be reflected, it would be greatly appreciated if brothers and sisters who love wild birds widely update the catalog, using this catalog as a base.
DOI: 10.6084/m9.figshare.23309276.v1
title: Cartesian coordinates

description: The Cartesian coordinates of the optimized structures in the paper titled "Bifunctionality of Dirhodium Tetracarboxylates in Metallaphotocatalysis".
DOI: 10.6084/m9.figshare.25101971.v2
title: Danish version of Physical Activity Enjoyment Scale (PACES-8)

description: Danish version of the <i>Physical Activity Enjoyment Scale</i> with eight items (PACES-8). The questionnare is available in Danish.DOI: 10.6084/m9.figshare.25101971<br><b>...PLEASE USE VERSION 2. THERE ARE ERRORS IN VERSION 1....</b>
DOI: 10.6084/m9.figshare.26043883.v1
title: landslide image(2000)

description: The dataset contains 2000 optical images of landslides，and part of it comes from open-source datasets, while the rest is interpreted through Google Earth.<br>
DOI: 10.6084/m9.figshare.27191259.v1
title: Input data for predicting miRNA target genes

description: This .zip file contains the input files needed for predicting miRNA target genes, which are:miRNA expression data for all the cancer types in TCGA, and was downloaded from TCGA Genomic Data Commons (https://portal. gdc.cancer.gov/).gene expression data for for all the cancer types in TCGA, downloaded from uscs xena. (https://xenabrowser.net/datapages/?dataset=EB++AdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.xena&host=https://pancanatlas.xenahubs.net&removeHub=https://xena.treehouse.gi.ucsc.edu:443)a TCGA sample sheet provides metadata that includes information about each sample, such as the unique barcode for the sample, its associated cancer type.a preprossed known miRNA-target genes data, which was obtained from 5 miRNA targets databases (mir2Disease, miRecords, TarBase, miRTarBase, and TargetScan)
DOI: 10.6084/m9.figshare.27916911.v1
title: Dataset for Daily Regional Gravity Field Estimation Using Line-of-Sight Gravity Differences: Case Studies of the 2020 Bangladesh Flood and 2021 Australian Flood

description: This dataset supports the study <i>“</i>Daily Regional Gravity Field Estimation Using GRACE Follow-On Line-of-Sight Gravity Differences<i>”</i>. The dataset includes the results from closed-loop simulations and real-world case studies used to validate a method for estimating daily regional gravity fields. The method leverages Line-of-Sight Gravity Difference (LGD) measurements from the GRACE Follow-On mission, combined with Slepian and B-spline basis functions for spatial and temporal parameterizations, respectively.The dataset is organized into two main components:<b>Closed-Loop Simulation Data</b>: Equivalent water height from the Slepian expansion of GLDAS soil moisture (not the full-resolution gridded data) and their corresponding estimates (with errors).<b>Case Study Data</b>: Gravity field solutions for the 2020 Bangladesh flood and the 2021 Australian flood.<b>Usage Notes:</b><br>The dataset is provided in NetCDF format with accompanying metadata for easy integration into existing workflows. Researchers can use this dataset for further development of satellite gravimetry methods or comparative analysis of hydrological events.
DOI: 10.6084/m9.figshare.28830341.v1
title: Data for Ground-State-Based Model Reduction with Unitary Circuits

description: Data for figures.
DOI: 10.6084/m9.figshare.4220406
title: Return to work following acquired brain injury: the views of patients and employers

description: <b>Purpose:</b> To investigate which factors are experienced as facilitators of or barriers to return to work (RTW), or as solutions to RTW-problems, by patients with acquired brain injury (ABI) and by employers. <b>Design:</b> Qualitative study. <b>Method:</b> Ten patients with ABI and seven employers participated in semi-structured interviews. Patients and employers were unrelated. Transcripts were open coded. Factors perceived to be facilitators, barriers, or solutions to RTW-problems were grouped on a thematic basis. <b>Results:</b> Both patients and employers distinguished patient-related and work-related facilitators. When questioned about barriers, both patients and employers emphasized the importance of work-related factors such as sensory overload at the workplace and condition-related factors such as fatigue. Patients regarded poor guidance and support as barriers, but employers did not. Employers and patients suggested that solutions to RTW-problems were work-related, if necessary backed up by professional supervision. Patients also mentioned the need for understanding and acceptance of the limitations resulting from ABI. <b>Conclusions:</b> Both patients and employers mentioned work-related and patient-related facilitators, work-related and condition-related barriers, and work-related solutions to RTW-problems. Patients mentioned lack of guidance and support as barriers, and stressed the need for understanding and acceptance of the limitations resulting from ABI in any RTW-solution.Implications for rehabilitation•Patients and employers are important stakeholders in the return to work (RTW) process of a patient with acquired brain injury (ABI)•Professionals in rehabilitation practice, occupational and insurance physicians need to help patients and employers to realize RTW•Professionals have to be aware of the perspectives of patients and employers regarding RTW, such as:^Little understanding of limitations resulting from ABI^Work-related aspects hindering RTW, such as sensory overload and high work pressure^Condition-related barriers to RTW such as (invisible) cognitive limitations and fatigue^Need for professional assistance during the RTW process •Patients and employers are important stakeholders in the return to work (RTW) process of a patient with acquired brain injury (ABI) •Professionals in rehabilitation practice, occupational and insurance physicians need to help patients and employers to realize RTW •Professionals have to be aware of the perspectives of patients and employers regarding RTW, such as: ^Little understanding of limitations resulting from ABI ^Work-related aspects hindering RTW, such as sensory overload and high work pressure ^Condition-related barriers to RTW such as (invisible) cognitive limitations and fatigue ^Need for professional assistance during the RTW process
DOI: 10.6084/m9.figshare.8300531.v2
title: data for Beaulieu et al. 2019

description: Diifusive, ebullitive, and total carbon dioxide, and methane emission rates measured during a survey of 32 reservoirs in Ohio, Kentucky, and Indiana in 2016. Environmental variables also included. See Beaulieu et al. 2019 for full details.<br>Beaulieu, J. J., S. Waldo, A. D. Balz, W. Barnett, A. Hall, M. C. Platz, and K. M. White. 2020. Methane and carbon dioxide emissions from reservoirs: controls and upscaling. Journal of Geophysical Research-Biogeosciences.<br>
DOI: 10.17632/3s7wrg2rp4
title: The supplemental material of  "A predictive system for Henoch-Schönlein purpura nephritis established by multivariate analysis plus nomogram model in Chinese hospitalized children: A retrospective cohort study"

description: This material contains supplemental figure for evaluating the predictive system of HSPN based on hospitalized pediatric HSP patients. The calibration curves indicated that the nomogram-predicted probabilities corresponded well with the actual probabilities. 
Figure legend: Evaluation of the predictive system for HSPN based on hospitalized pediatric HSP patients. Calibration curves: the X-axis represents the nomogram-predicted probability of HSPN, and the Y-axis represents the actually observed probability. Perfect prediction would correspond to the 45-degree dotted black line. The solid red line represents the entire cohort without bias-correction, and the solid blue line is bias-corrected by bootstrapping (B=1,000 repetitions), indicating the observed nomogram performance.
DOI: 10.6084/m9.figshare.16912174.v1
title: Supplementary Material for: Perception of a New Prolonged-Release Buprenorphine Formulation in Patients with Opioid Use Disorder: The PREDEPO Study

description: <b><i>Aim:</i></b> The aim of the study was to assess the acceptance of patients with opioid use disorder (OUD) to switching their opioid dependence treatment (ODT) for a prolonged-release buprenorphine (PRB) injection according to their prior ODT (buprenorphine/naloxone [B/N] or methadone). <b><i>Methods:</i></b> This was an observational, retrospective/cross-sectional, multicentre study of adult patients diagnosed with OUD on ODT. Data collected from diaries were analysed to know their interest and opinion on PRB. Questions with fixed response options were included, and several Likert scales were used. <b><i>Results:</i></b> A total of 98 patients were enrolled (B/N: 50.0%, methadone: 50.0%). The mean age was 46.9 ± 8.43 years and 79.6% were males. PRB was similarly perceived by both groups in most variables analysed, receiving a mean score of 7.2/10 (B/N: 7.4, methadone: 7.0; <i>p</i> = 0.520), and approximately 65% of patients said they were willing to switch to PRB (B/N: 63.3%, methadone: 65.3%; <i>p</i> = 0.833). Of these, a higher percentage in the B/N group considered that switching would be easy/very easy (B/N: 90.3%, methadone: 46.9%; <i>p</i> &lt; 0.001) and that they would start PRB when available (B/N: 64.5%, methadone: 34.3%; <i>p</i> = 0.005). More than 90% would prefer the monthly injection (B/N: 93.6%, methadone: 100%; <i>p</i> = 0.514). One-third of patients in both groups were unsure/would not switch their ODT to PRB (B/N: 36.7%, methadone: 34.7%; <i>p</i> = 0.833). The main reason was administration by injection. <b><i>Conclusion:</i></b> Two-thirds of patients would switch their treatment for PRB, and most patients on B/N considered that switching would be easy. PRB could be a suitable alternative for OUD management.
DOI: 10.6084/m9.figshare.19644636.v2
title: MedSeg Ventricles MRI Dataset

description: Dataset obtained from Open Neuro. 15 cases with segmentation of side ventricles on brain MRI T1W scans. Cases obtained from open neuro: https://openneuro.org/ Segmentations done by the MedSeg team Our site: MedSeg Our tool: MedSeg Segmentation More data here