cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18108748
title: Bedrock preferences matters in conservation genetics of Dianthus gratianopolitanus in Central Europe

description: Plant species from rocky outcrops are often highly endangered in Central Europe due to habitat loss and increasing fragmentation of the already scattered populations considered either as remnants of the species´ evolutionary history since postglacial times or historical land use changes. Often these species are characterized by adaptation either to siliceous or calcareous bedrock types. However, there are also species occurring on both substrates facing differing ecological and environmental conditions. In central Europe Cheddar Pink (Dianthus gratianopolitanus) is among those species facing spatio-temporal shifts of their environmental niches due to climate warming, habitat loss and barriers to geneflow and dispersal. We studied eleven metapopulations of D. gratianopolitanus from the calcareous and the siliceous range using nuclear AFLP data as well as plastid haplotypes. In addition, the ecological niches under the current climate and under future climate scenarios were predicted and the most influencal climate variables were analyzed. The genetic structure of inferred genotypes and genetic assignment indicate varying patterns of isolation in all populations. While both bedrock groups showed different levels of genetic connectivity, the siliceous populations indicated stronger within-population substructure accompanied with reduced genetic diversity. Niche modeling indicates differing climatic conditions and limitations for D. gratianopolitanus from calcareous and siliceous bedrock, with the southern and calcareous populations being affected by drought stress while the northern populations are limited by minimum temperatures. Predictions of the distribution range under relevant climate scenarios indicate a drastic reduction of suitable areas for both bedrock types until the end of the century. 

 

This account contains supplementary material to the study comprising the following information:

Appendix A                   Figures A.1 to A.11       Genetic analysis of metapopulations and spatial documentation.

Appendix B.1 Information      Detailed description of metapopulations

Table B.1.                       Accession table 

Fig. B.1.                          Bioclimatic variables and Pearson correlations

Fig. B.2.                          Selected bioclim variables for ENM analyses

Fig. B.3.                          Comparison of the most effective bioclim variables according to substrate type

The S_III.1.*.* files contains the information for metapopulations on genetic data and analyses for all 11 metapopulations:

(1) raw AFLP data as excel-file

(2) Nexus input file for SplitsTree

(3) SVG file illustrating genetic structure at different K

(4) Results of optimal K analyses (graphs)

(5) Results of Evano statistics
DOI: 10.15468/dl.h79bp5
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jarava pseudoichu",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 89 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017653-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7egdz9
title: Occurrence Download

description: A dataset containing 1945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Miconia rubiginosa",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 1945 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017654-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pu4e4s
title: Occurrence Download

description: A dataset containing 9594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (Benin, Côte d’Ivoire, Burkina Faso, Togo, Senegal, Guinea, Sierra Leone, Mali, Ghana, Guinea-Bissau, Niger, Nigeria, Liberia, Gambia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pterocarpus erinaceus",
 "Year 1970-2026"
 ]
}

 The dataset includes 9594 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017655-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.82hyab
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pappophorum caespitosum",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 193 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017656-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18639880
title: Whole-Genome Sequences of Enterobacter cloacae H5 and Enterobacter bugandensis H6 Isolated from Patients in Khartoum State, Sudan

description: This dataset contains supplementary genomic data associated with the whole-genome analysis of Enterobacter cloacae strain H5 and Enterobacter bugandensis strain H6.

The dataset includes:





Antimicrobial resistance (AMR) genes identified using the Comprehensive Antibiotic Resistance Database (CARD) and the Resistance Gene Identifier (RGI) under strict criteria.




A comparative genomic features table summarizing genome size, GC content, gene counts, and assembly statistics.




A phylogenomic tree generated using FastME 2.1.6.1 based on Genome BLAST Distance Phylogeny (GBDP) distances, as implemented in the TYGS platform. Branch lengths represent GBDP distance (d5), and pseudo-bootstrap values (>60%) were calculated from 100 replications. The tree is midpoint-rooted.



According to TYGS phylotaxonomic analysis, Enterobacter cloacae H5 clusters within the species Enterobacter cloacae ATCC 13047T, and Enterobacter bugandensis H6 clusters within Enterobacter bugandensis EB-247T.

These data are provided to ensure transparency, reproducibility, and compliance with FAIR data principles and support the study titled:“Molecular Characterization of MDR Enterobacter spp. Isolated from Clinical Specimens in Sudan.”
DOI: 10.5281/zenodo.18639881
title: Whole-Genome Sequences of Enterobacter cloacae H5 and Enterobacter bugandensis H6 Isolated from Patients in Khartoum State, Sudan

description: This dataset contains supplementary genomic data associated with the whole-genome analysis of Enterobacter cloacae strain H5 and Enterobacter bugandensis strain H6.

The dataset includes:





Antimicrobial resistance (AMR) genes identified using the Comprehensive Antibiotic Resistance Database (CARD) and the Resistance Gene Identifier (RGI) under strict criteria.




A comparative genomic features table summarizing genome size, GC content, gene counts, and assembly statistics.




A phylogenomic tree generated using FastME 2.1.6.1 based on Genome BLAST Distance Phylogeny (GBDP) distances, as implemented in the TYGS platform. Branch lengths represent GBDP distance (d5), and pseudo-bootstrap values (>60%) were calculated from 100 replications. The tree is midpoint-rooted.



According to TYGS phylotaxonomic analysis, Enterobacter cloacae H5 clusters within the species Enterobacter cloacae ATCC 13047T, and Enterobacter bugandensis H6 clusters within Enterobacter bugandensis EB-247T.

These data are provided to ensure transparency, reproducibility, and compliance with FAIR data principles and support the study titled:“Molecular Characterization of MDR Enterobacter spp. Isolated from Clinical Specimens in Sudan.”
DOI: 10.15468/dl.sgbzx7
title: Occurrence Download

description: A dataset containing 2528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Miconia stenostachya",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 2528 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017658-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5b9pr
title: Occurrence Download

description: A dataset containing 348734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((33.0789 -5.67036,6.02672 -5.8373,5.9853 -10,5.93555 -15,5.91485 -17.08056,6.21686 -20,6.62789 -23.97327,6.91666 -25,8.32291 -30,8.76701 -31.57903,8.84758 -31.8637,8.94627 -32.1871,9.05197 -32.50828,9.16463 -32.82708,9.28419 -33.14336,9.41061 -33.45696,9.54381 -33.76774,9.6972 -34.10425,9.84441 -34.40865,9.9982 -34.70977,10.15438 -35,10.31994 -35.29249,10.4056 -35.43825,10.58725 -35.73588,10.68913 -35.89649,10.81046 -36.08228,10.94638 -36.28375,11.04885 -36.43128,11.27773 -36.74823,11.4562 -36.9842,11.64574 -37.22497,11.74562 -37.34803,11.95601 -37.5991,12.09452 -37.7587,12.23373 -37.88555,12.36149 -37.99829,12.55977 -38.16659,12.77598 -38.34135,12.92488 -38.45667,13.13365 -38.61176,13.29439 -38.72617,13.55421 -38.90228,13.75035 -39.02836,13.90299 -39.12255,14.11141 -39.24581,14.40125 -39.40735,14.70377 -39.56424,14.87296 -39.64697,15.07615 -39.74173,15.2236 -39.80744,15.43822 -39.89857,15.69296 -40,15.8645 -40.06427,16.10979 -40.15069,16.34847 -40.2287,16.52 -40.28114,16.84812 -40.37318,24.69155 -41.32389,30.17267 -42.32046,33.0789 -5.67036))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Accipitriformes",
 "Year 2015-2024"
 ]
}

 The dataset includes 348734 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017633-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3dzjw
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lathyrus japonicus"
 ]
}

 The dataset includes 35 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017659-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjefdh
title: Occurrence Download

description: A dataset containing 738 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ruprechtia apetala",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 738 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017660-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14837006
title: Trending Youtube Video Statistics (113 Countries)
DOI: 10.15468/dl.3ymuud
title: Occurrence Download

description: A dataset containing 4846 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Miconia theaezans",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 4846 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017661-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qq9pjk
title: Occurrence Download

description: A dataset containing 1103200 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1103200 records from 427 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017637-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xue7rc
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neltuma affinis",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 213 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017662-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17278678
title: Synthetic Resonant Amplification Framework Dataset (SRAF-200) and Seed Corpus (N=30) – Version 2

description: This dataset accompanies the article “Interrupting Resonant Amplification: A Mechanistic and Design Framework for Human–AI Interaction,” accepted for publication in Computers in Human Behavior Reports (2026).

 

Contents:

• SRAF_200_full_v2.csv – 200 fully synthetic dialogues labeled by RAF Phase (P1–P3) and Distortion Type.

• SRAF_200_synthetic_v2.csv – simplified variant for linguistic-marker analysis (PCCI components).

• SRAF_200_with_full_metadata_v2.csv – combined version with metadata fields.

• RAF_MiniDataset_30entries_CleanEnglish.xlsx – public 30-excerpt seed corpus (construct grounding).

• README_v2.txt, CODEBOOK_v2.md, MANIFEST_v2.json.

 

Purpose: To support measurement development and audit prototyping for the Resonant Amplification Framework (RAF).

 

Ethics: All texts are synthetic or paraphrased public excerpts; no personal data.

 

Citation:

Kim, R. S. (2025). Resonant Amplification Framework: Corpora and Supplementary Materials (Version 2) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.17278678
DOI: 10.5281/zenodo.17019246
title: Synthetic Resonant Amplification Framework Dataset (SRAF-200) and Seed Corpus (N=30) – Version 2

description: This dataset accompanies the article “Interrupting Resonant Amplification: A Mechanistic and Design Framework for Human–AI Interaction,” accepted for publication in Computers in Human Behavior Reports (2026).

 

Contents:

• SRAF_200_full_v2.csv – 200 fully synthetic dialogues labeled by RAF Phase (P1–P3) and Distortion Type.

• SRAF_200_synthetic_v2.csv – simplified variant for linguistic-marker analysis (PCCI components).

• SRAF_200_with_full_metadata_v2.csv – combined version with metadata fields.

• RAF_MiniDataset_30entries_CleanEnglish.xlsx – public 30-excerpt seed corpus (construct grounding).

• README_v2.txt, CODEBOOK_v2.md, MANIFEST_v2.json.

 

Purpose: To support measurement development and audit prototyping for the Resonant Amplification Framework (RAF).

 

Ethics: All texts are synthetic or paraphrased public excerpts; no personal data.

 

Citation:

Kim, R. S. (2025). Resonant Amplification Framework: Corpora and Supplementary Materials (Version 2) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.17278678
DOI: 10.15468/dl.t9qcs9
title: Occurrence Download

description: A dataset containing 562 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anopheles annularis"
 ]
}

 The dataset includes 562 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017663-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f2hb5d
title: Occurrence Download

description: A dataset containing 554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lagenocarpus rigidus tenuifolius",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 554 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017664-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6v9v9n
title: Occurrence Download

description: A dataset containing 1359939 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halcyon smyrnensis"
 ]
}

 The dataset includes 1359939 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017570-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uuvgjy
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Cnipodectes superrufus Lane, Servat, Valqui & Lambert, 2007"
 ]
}

 The dataset includes 102 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014199-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c54b9d
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Passiflora foetida",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 164 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047990-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p63xme
title: Occurrence Download

description: A dataset containing 274 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bajacalifornia megalops"
 ]
}

 The dataset includes 274 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047991-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cd8up2
title: Occurrence Download

description: A dataset containing 3808 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tapirus terrestris"
 ]
}

 The dataset includes 3808 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047992-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mra24q
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Citrullus lanatus",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047993-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpg94z
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Passiflora foetida",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047994-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6p8w7
title: Occurrence Download

description: A dataset containing 874 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-100.20407 25.73242,-100.20845 25.73571,-100.21904 25.73669,-100.22379 25.74163,-100.23073 25.74887,-100.24059 25.75479,-100.24717 25.76367,-100.25484 25.77387,-100.26653 25.77815,-100.28187 25.77782,-100.29246 25.76499,-100.28808 25.73998,-100.28187 25.72847,-100.27091 25.7107,-100.26178 25.71004,-100.25082 25.71037,-100.23292 25.70938,-100.22087 25.71004,-100.20808 25.72189,-100.20407 25.73242))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 874 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047996-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ma7r4n
title: Occurrence Download

description: A dataset containing 10488858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Geometry POLYGON((-80.59359 -4.67975,-75.19479 -4.67975,-75.19479 1.65765,-80.59359 1.65765,-80.59359 -4.67975))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 10488858 records from 1175 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047961-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wrwax6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Glossogobius robertsi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047998-250717081556266/datasets/export for details.
DOI: 10.15468/dl.rvzyaa
title: Occurrence Download

description: A dataset containing 2585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-100.20407 25.73242,-100.20845 25.73571,-100.21904 25.73669,-100.22379 25.74163,-100.23073 25.74887,-100.24059 25.75479,-100.24717 25.76367,-100.25484 25.77387,-100.26653 25.77815,-100.28187 25.77782,-100.29246 25.76499,-100.28808 25.73998,-100.28187 25.72847,-100.27091 25.7107,-100.26178 25.71004,-100.25082 25.71037,-100.23292 25.70938,-100.22087 25.71004,-100.20808 25.72189,-100.20407 25.73242))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 2585 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047999-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.