cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3406147
title: The planktonic stages of the salmon louse (Lepeophtheirus salmonis) are tolerant of end-of-century pCO2 concentrations

description: Filename: WaterConditions<br> Routine measurements of water conditions including nutrient levels, alkalinity, water temperature and carbon chemistry as calculated from pH spectroscopy measurements and CO2SYS. Filename: Respiration data.xlsx <br> Oxygen Consumption rates of salmon lice according to age, stage, and pCO2 treatment. Filename: Lipid data.xlsx<br> Lipid volume of salmon lice measured with fluorescence microscopy. Filename: JC10 data.xlsx <br> Metabolic activity observed by measuring mitochondrial membrane potential (MMP). Membrane polarization in mitochondria is an indication of active cells. Polarized mitochondria were represented by red JC-10 aggregate (λ exc/λ em = 488/590 nm) while the green JC-10 monomer (λ exc/λ em = 488/525 nm) labeled the presence of mitochondrial membrane. Filename: Fatty Acid.xlsx<br> Fatty acid profiles of salmon lice according to stage and pCO2 treatment. Data is presented as mass (ng) of the identified fatty acid per individual animal. Columns are separated by the identified fatty acid, '?' indicate ambiguity in the location of the double bond. Filename: CHN data.xlsx<br> Carbon and nitrogen content of individual salmon lice eggs, nauplii, and copepodids.
description: ABSTRACT: The copepod Lepeophtheirus salmonis is an obligate ectoparasite of salmonids. Salmon lice are major pests in salmon aquaculture and due to its economic impact Lepeophtheirus salmonis is one of the most well studied species of marine parasite. However, there is limited understanding of how increased concentration of pCO2 associated with ocean acidification will impact host-parasite relationships. We investigated the effects of increased pCO2 on growth and metabolic rates in the planktonic stages, rearing L. salmonis from eggs to 12 days post hatch copepodids under three treatment levels: Control (416 µatm), Mid (747 µatm), and High (942 µatm). The pCO2 treatment had a significant effect on oxygen consumption rate with the High treatment animals exhibiting the greatest respiration. The treatments did not have a significant effect on the other biological endpoints measured (carbon, nitrogen, lipid volume, and fatty acid content). The results indicate that L. salmonis have mechanisms to compensate for increased concentration of pCO2 and that populations will be tolerant of projected future ocean acidification scenarios. The work reported here also describes catabolism during the lecithotrophic development of Lepeophtheirus salmonis, information that is not currently available to parameterize models of dispersal and viability of the planktonic free-living stages.
DOI: 10.5061/dryad.23h5195/1
title: Dryad Item 10.5061/DRYAD.23H5195/1

description: (:tba)
DOI: 10.25606/surf.578c6039-d235de81
title: The Cosmogrid Simulation: Statistical Properties of Small Dark Matter Halos (2048-467)

description: We present the results of the "Cosmogrid" cosmological N-body simulation suites based on the concordance LCDM model. The Cosmogrid simulation was performed in a 30 Mpc box with 2048³ particles. The mass of each particle is 1.28x10^5 Msun, which is sufficient to resolve ultra-faint dwarfs. We found that the halo mass function shows good agreement with the Sheth & Tormen fitting function down to ~10^7 Msun. We have analyzed the spherically averaged density profiles of the three most massive halos which are of galaxy group size and contain at least 170 million particles. The slopes of these density profiles become shallower than -1 at the inner most radius. We also find a clear correlation of halo concentration with mass. The mass dependence of the concentration parameter cannot be expressed by a single power law, however a simple model based on the Press-Schechter theory proposed by Navarro et al. gives reasonable agreement with this dependence. The spin parameter does not show a correlation with the halo mass. The probability distribution functions for both concentration and spin are well fitted by the log-normal distribution for halos with the masses larger than ~10^8 Msun. The subhalo abundance depends on the halo mass. Galaxy-sized halos have 50% more subhalos than ~10^11 Msun halos have. This is snapshot 467 of the 2048³ resolution collection.
DOI: 10.5281/zenodo.3406135
title: NDVI for Northern Limestone (2002/07/05)

description: NDVI computation (using Landsat-7 ETM+ bands: (([NIR]-[R])/([NIR]+[R])), scale factor 0.001. Clip to area of interest. Cloud masking
DOI: 10.5281/zenodo.3406136
title: NDVI for Northern Limestone (2002/07/05)

description: NDVI computation (using Landsat-7 ETM+ bands: (([NIR]-[R])/([NIR]+[R])), scale factor 0.001. Clip to area of interest. Cloud masking
DOI: 10.6073/pasta/f0050c1cfe11a5f78e7bd736c8d6f6ee
title: Plant composition data from 67 grassland sites of the Upper Gunnison Basin, CO, USA, 2014

description: Here, we deposit data from a vegetation survey conducted in 2014. The data was collected to document current vegetation patterns in the region, parameterize species distribution models, and assess community turnover in flower color. The survey was conducted in the Upper Gunnison Basin and the environs around the Rocky Mountain Biological Laboratory, CO, USA, spanning an elevation gradient from 2700-4000m above sea level. Data were acquired through visual estimates of percent cover of species within replicate quadrats in a site. We include information scraped from the USDA Plants Database (https://plants.sc.egov.usda.gov/java/) on species lifeform, life history, and invasive status.
DOI: 10.5061/dryad.r1h8gm4/1
title: Dryad Item 10.5061/DRYAD.R1H8GM4/1

description: (:tba)
DOI: 10.5061/dryad.r1h8gm4/2
title: Dryad Item 10.5061/DRYAD.R1H8GM4/2

description: (:tba)
DOI: 10.5281/zenodo.2672980
title: Retrieving monthly and interannual pHT in the East China Sea shelf using an artificial neural network: ANN-pHT-v1

description: <br> The reliability of the artificial neural network model was evaluated by independent sampled data from 3 cruises in 2018. Monthly water column pHT for the period 2000-2016 was obtained passing T, S, DO, N, P, and Si from the Finite-Volume Coastal Ocean Model with the European Regional Sea Ecosystem Model through the artificial neural network. The spatiotemporal resolution of monthly pHT is 1-10 km in the horizontal, 10 depth levels in the vertical, and 12 months. Seasonal pHT dynamics in the East China Sea shelf can be primarily attributed to temperature changes and the shifting balance of production and respiration processes.
DOI: 10.5281/zenodo.2672981
title: Retrieving monthly and interannual pHT in the East China Sea shelf using an artificial neural network: ANN-pHT-v1

description: <br> The reliability of the artificial neural network model was evaluated by independent sampled data from 3 cruises in 2018. Monthly water column pHT for the period 2000-2016 was obtained passing T, S, DO, N, P, and Si from the Finite-Volume Coastal Ocean Model with the European Regional Sea Ecosystem Model through the artificial neural network. The spatiotemporal resolution of monthly pHT is 1-10 km in the horizontal, 10 depth levels in the vertical, and 12 months. Seasonal pHT dynamics in the East China Sea shelf can be primarily attributed to temperature changes and the shifting balance of production and respiration processes.
DOI: 10.5061/dryad.2n3fd2p/1
title: Dryad Item 10.5061/DRYAD.2N3FD2P/1

description: (:tba)
DOI: 10.5061/dryad.2n3fd2p/2
title: Dryad Item 10.5061/DRYAD.2N3FD2P/2

description: (:tba)
DOI: 10.25919/5d7a1be572cfc
title: Parkes observations for project P971 semester 2019APRS_13

description: We propose timing observations of the relativistic pulsar - white-dwarf binary PSR J1141-6545. This unique system offers access to a wide range of physics, from relativistic phenomena through pulsar emission cone studies, to the structure and distribution of interstellar plasma along our line-of-sight. The recently installed Parkes Ultra Wide Band Low Frequency (UWL) receiver has opened up the possibility of performing first-ever studies of its orbital dynamics at high temporal resolution and study of the effects of the intra-binary medium on the dispersion and polarisation of the pulse profile. Our analysis of data obtained to date suggests that the pulsar would precess away from our line-of-sight in the next 3-5 years. Hence, regular observations are crucial to maximizing its science outcome
DOI: 10.5281/zenodo.3406517
title: Data & Code for Sea-level rise induced threats depend on size of tide-influenced estuaries worldwide

description: Data & Code for the article: "Data & Code for Sea-level rise induced threats depend on size of tide-influenced estuaries worldwide" - 1D Hydrodynamic model - Along-channel width profiles of the estuaries used in this study - Input data used for the tool and model in this study - Output data used for the figures
DOI: 10.5281/zenodo.3406518
title: Data & Code for Sea-level rise induced threats depend on size of tide-influenced estuaries worldwide

description: Data & Code for the article: "Data & Code for Sea-level rise induced threats depend on size of tide-influenced estuaries worldwide" - 1D Hydrodynamic model - Along-channel width profiles of the estuaries used in this study - Input data used for the tool and model in this study - Output data used for the figures
DOI: 10.5061/dryad.d152444/1
title: Dryad Item 10.5061/DRYAD.D152444/1

description: (:tba)
DOI: 10.15468/eq9thi
title: Taxonomic revision of the genus Hyperaulax Pilsbry, 1897 (Gastropoda, Stylommatophora, Odontostomidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Salvador, Rodrigo B., Cavallari, Daniel C. (2019): Taxonomic revision of the genus Hyperaulax Pilsbry, 1897 (Gastropoda, Stylommatophora, Odontostomidae). Zoosystematics and Evolution 95 (2): 453-463, DOI: http://dx.doi.org/10.3897/zse.95.38259, URL: http://dx.doi.org/10.3897/zse.95.38259
DOI: 10.15468/nbujzg
title: Delineation of two new, highly similar species of Taiwanese Cylindera tiger beetles (Coleoptera, Carabidae, Cicindelinae) based on morphological and molecular evidence

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chou, Ming-Hsun, Yeh, Wen-Bin (2019): Delineation of two new, highly similar species of Taiwanese Cylindera tiger beetles (Coleoptera, Carabidae, Cicindelinae) based on morphological and molecular evidence. ZooKeys 875: 31-62, DOI: http://dx.doi.org/10.3897/zookeys.875.37856, URL: http://dx.doi.org/10.3897/zookeys.875.37856
DOI: 10.14459/2013m1456513
title: Taenia solium cysticercosis and taeniasis in urban settings: epidemiological evidence from a health-center based study among people with epilepsy in Dar es Salaam, Tanzania (Dataset)
DOI: 10.15468/rrzdt1
title: Unexpected species diversity in electric eels with a description of the strongest living bioelectricity generator

description: This dataset contains the digitized treatments in Plazi based on the original journal article Santana, C. David de, Crampton, William G. R., Dillman, Casey B., Frederico, Renata G., Sabaj, Mark H., Covain, Raphaël, Ready, Jonathan, Zuanon, Jansen, de Oliveira, Renildo R., Mendes-Júnior, Raimundo N., Bastos, Douglas A., Teixeira, Tulio F., Mol, Jan, Ohara, Willian, Castro, Natália Castro e, Peixoto, Luiz A., Nagamachi, Cleusa, Sousa, Leandro, Montag, Luciano F. A., Ribeiro, Frank, Waddell, Joseph C., Piorsky, Nivaldo M., Vari, Richard P., Wosiacki, Wolmar B. (2019): Unexpected species diversity in electric eels with a description of the strongest living bioelectricity generator. Nature Communications 10 (4000): 1-10, DOI: https://doi.org/10.1038/s41467-019-11690-z
DOI: 10.7910/dvn/ytupb9/urtgww
title: lebanon_syrians_data.csv

description: :unav
DOI: 10.5281/zenodo.3406552
title: Datasets for Combining Dynamic & Static Scheduling in High-level Synthesis

description: Benchmark datasets for Combining Dynamic & Static Scheduling in High-level Synthesis.
DOI: 10.25345/c50h2f
title: MassIVE MSV000084319 - GNPS Projet GEOMAR mode positif
title: Epibacterial strains [isolated from Agarophyton vermiculophyllum (AV) populations] that were tested in tip bleaching assays
DOI: 10.15482/usda.adc/1504421
title: Economic Model of Deficit Irrigation
DOI: 10.5281/zenodo.3406549
title: PIC data for 2019 JGR paper (An event study of simultaneous earthward and tailward bursty fast flows in the Earth's mid-tail)

description: The PIC data and an IDL script to read the data.
DOI: 10.5281/zenodo.3381643
title: Enhancing cardiac glycolysis causes an increase in PDK4 content in response to short term high fat diet

description: Cardiac metabolic flexibility is essential for proper function. Under pathological conditions, such as diabetes, the heart increases reliance on fatty acid oxidation at the expense of glucose metabolism. Thus, restoring or enhancing glucose usage may provide a therapeutic strategy. In this study we sought to identify how the cardiac proteomic profile is affected basally and after a short term high fat diet (7d) in wild type and a transgenic model of enhanced glycolysis (Glyco<sup>Hi</sup>). Targeted quantitative proteomics and cluster analysis revealed revealed Glyco<sup>Hi</sup> mice have increased protein expression of glycolytic enzymes and that this was sustained with the high fat diet challenge. Glyco<sup>Hi</sup> mice also had significantly increased expression of pyruvate dehydrogenase kinase 4 (PDK4), an enzyme that regulates the overall rate of glucose oxidation. These results support that Glyco<sup>Hi</sup> mice have the capacity to increase glycolysis when challenged with a nutrient stress but that there is a compensatory increase in PDK4 that may limit the overall rate of glucose oxidation.
DOI: 10.5281/zenodo.3381644
title: Enhancing cardiac glycolysis causes an increase in PDK4 content in response to short term high fat diet

description: Cardiac metabolic flexibility is essential for proper function. Under pathological conditions, such as diabetes, the heart increases reliance on fatty acid oxidation at the expense of glucose metabolism. Thus, restoring or enhancing glucose usage may provide a therapeutic strategy. In this study we sought to identify how the cardiac proteomic profile is affected basally and after a short term high fat diet (7d) in wild type and a transgenic model of enhanced glycolysis (Glyco<sup>Hi</sup>). Targeted quantitative proteomics and cluster analysis revealed revealed Glyco<sup>Hi</sup> mice have increased protein expression of glycolytic enzymes and that this was sustained with the high fat diet challenge. Glyco<sup>Hi</sup> mice also had significantly increased expression of pyruvate dehydrogenase kinase 4 (PDK4), an enzyme that regulates the overall rate of glucose oxidation. These results support that Glyco<sup>Hi</sup> mice have the capacity to increase glycolysis when challenged with a nutrient stress but that there is a compensatory increase in PDK4 that may limit the overall rate of glucose oxidation.
DOI: 10.5281/zenodo.3406548
title: PIC data for 2019 JGR paper (An event study of simultaneous earthward and tailward bursty fast flows in the Earth's mid-tail)

description: The PIC data and an IDL script to read the data.
DOI: 10.5061/dryad.5q5b554/1
title: Dryad Item 10.5061/DRYAD.5Q5B554/1

description: (:tba)
DOI: 10.5281/zenodo.3406564
title: List of Digital Humanities journals

description: The dataset contains a list of Digital Humanities journals. It contains: an arbitrary identified, electronic and print ISSN (when it exists), the title, the URL, a column describing the level of digital humanities publications that it stores. The DH level field may have four values: <strong>Exclusively</strong> (the journal is completely devoted as publishing Digital Humanities articles) <strong>Significantly </strong>(a significant set of publications deal with Digital Humanities) <strong>Marginally</strong> (only a small set of publications are Digital Humanities) <strong>Mega-journal </strong>
DOI: 10.6073/pasta/86d37b9e57c56038c492853ec3aa2d0a
title: Little Rock Lake Experiment at North Temperate Lakes LTER: Zooplankton count 1983 - 2000

description: The Little Rock Acidification Experiment was a joint project involving the USEPA (Duluth Lab), University of Minnesota-Twin Cities, University of Wisconsin-Superior, University of Wisconsin-Madison, and the Wisconsin Department of Natural Resources. Little Rock Lake is a bi-lobed lake in Vilas County, Wisconsin, USA. In 1983 the lake was divided in half by an impermeable curtain and from 1984-1989 the northern basin of the lake was acidified with sulfuric acid in three two-year stages. The target pHs for 1984-5, 1986-7, and 1988-9 were 5.7, 5.2, and 4.7, respectively. Starting in 1990 the lake was allowed to recover naturally with the curtain still in place. Data were collected through 2000. The main objective was to understand the population, community, and ecosystem responses to whole-lake acidification. Funding for this project was provided by the USEPA and NSF. Zooplankton samples are collected from the treatment and reference basins of Little Rock Lake at at two to nine depths using a 30L Schindler Patalas trap (53um mesh). Zooplankton samples are preserved in buffered formalin and archived. Data are summed over sex and stage and integrated volumetrically over the water column to provide a lake-wide estimate of organisms per liter for each species. Sampling Frequency: varies - Number of sites: 2
DOI: 10.15468/qofgfu
title: Reporte hidrobiológico Río Magdalena, Sector Las Flores. Barranquilla, Atlántico

description: En el análisis cualitativo de la comunidad fitoplanctónica muestreada en el río Magdalena (sector Las flores) se registraron 24 morfoespecies que incluyeron cuatro (4) Cyanobacterias, siete (7) Diatomeas, 11 Chlorophytas, una (1) desmideas y una (1) (euglenofitas), lo cual corresponde a un ensamblaje típico de una comunidad fitoplanctónica de un ecosistema lótico. Las Chlorophyta y Bacillariophyta tienden a ser comunes en ecosistemas lóticos, mientras que especies de Cyanophyta, Euglenophyta, Cryptophyta y Dinophyta son relativamente raras y muy ocasionalmente forman grandes poblaciones en ríos (Duque y Núñez, 2000). La comunidad fitoplanctónica registrada durante el muestreo fue escasa con valores bajos de abundancia y poco diversa, con baja equitatividad en la distribución de la abundancia entre las morfoespecies registradas.
DOI: 10.5281/zenodo.3333514
title: Dataset for External quality assessment (EQA) of Neisseria gonorrhoeae antimicrobial susceptibility testing in primary laboratories in Germany

description: This dataset is used for the publication "External quality assessment (EQA) of Neisseria gonorrhoeae antimicrobial susceptibility testing in primary laboratories in Germany" and contains data on performed Neisseria gonorrhoeae AMR tests in sentinel Laboratories.
DOI: 10.5281/zenodo.3333515
title: Dataset for External quality assessment (EQA) of Neisseria gonorrhoeae antimicrobial susceptibility testing in primary laboratories in Germany

description: This dataset is used for the publication "External quality assessment (EQA) of Neisseria gonorrhoeae antimicrobial susceptibility testing in primary laboratories in Germany" and contains data on performed Neisseria gonorrhoeae AMR tests in sentinel Laboratories.
DOI: 10.6073/pasta/0e83d8d9347ea3b5f6a1fbbf6fc72bcc
title: Little Rock Lake Experiment at North Temperate Lakes LTER: Zooplankton length 1988 - 1998

description: The Little Rock Acidification Experiment was a joint project involving the USEPA (Duluth Lab), University of Minnesota-Twin Cities, University of Wisconsin-Superior, University of Wisconsin-Madison, and the Wisconsin Department of Natural Resources. Little Rock Lake is a bi-lobed lake in Vilas County, Wisconsin, USA. In 1983 the lake was divided in half by an impermeable curtain and from 1984-1989 the northern basin of the lake was acidified with sulfuric acid in three two-year stages. The target pHs for 1984-5, 1986-7, and 1988-9 were 5.7, 5.2, and 4.7, respectively. Starting in 1990 the lake was allowed to recover naturally with the curtain still in place. Data were collected through 2000. The main objective was to understand the population, community, and ecosystem responses to whole-lake acidification. Funding for this project was provided by the USEPA and NSF. Zooplankton samples are collected from the treatment and reference basins of Little Rock Lake at at two to nine depths using a 30L Schindler Patalas trap (53um mesh). Zooplankton samples are preserved in buffered formalin and archived. Data are summed over sex and stage and integrated volumetrically over the water column to provide a lake-wide estimate of average length of organisms for each species.
DOI: 10.5281/zenodo.3406188
title: NDVI for Northern Limestone (2003/05/05)

description: NDVI computation (using Landsat-7 ETM+ bands: (([NIR]-[R])/([NIR]+[R])), scale factor 0.001. Clip to area of interest. Cloud masking.
DOI: 10.5281/zenodo.3406189
title: NDVI for Northern Limestone (2003/05/05)

description: NDVI computation (using Landsat-7 ETM+ bands: (([NIR]-[R])/([NIR]+[R])), scale factor 0.001. Clip to area of interest. Cloud masking.
DOI: 10.5281/zenodo.3406242
title: Raman data for "Resistance to ocean acidification in coral reef taxa is not gained by acclimatization"

description: This file contains the Raman data and code for "Resistance to ocean acidification in coral reef taxa is not gained by acclimatization" by Comeau et al. in Nature Climate Change. Run the file, "run.R" in R to reproduce the analysis. Please see the published paper for methods and details: https://doi.org/10.1038/s41558-019-0486-9
DOI: 10.5281/zenodo.3406243
title: Raman data for "Resistance to ocean acidification in coral reef taxa is not gained by acclimatization"

description: This file contains the Raman data and code for "Resistance to ocean acidification in coral reef taxa is not gained by acclimatization" by Comeau et al. in Nature Climate Change. Run the file, "run.R" in R to reproduce the analysis. Please see the published paper for methods and details: https://doi.org/10.1038/s41558-019-0486-9
DOI: 10.5281/zenodo.3406333
title: Berends_etal_2019_Geosciences_Supplement

description: Supplement to the Berends et al. (2019) article in Geosciences.<br> Results from three separate simulations of the last 3.6 Myr with an ice-sheet model: global mean sea-level and pCO2.<br> Full citation: Berends, C.J., de Boer, B. and van de Wal, R. S. W.: Reconstructing the<br> evolution of ice sheets, sea-level and atmospheric CO2 during the past 3.6 million years,<br> Geosciences, special issue “Developments in Modelling Palaeo-Ice Sheets”, 2019 (under review)
DOI: 10.5281/zenodo.3406334
title: Berends_etal_2019_Geosciences_Supplement

description: Supplement to the Berends et al. (2019) article in Geosciences.<br> Results from three separate simulations of the last 3.6 Myr with an ice-sheet model: global mean sea-level and pCO2.<br> Full citation: Berends, C.J., de Boer, B. and van de Wal, R. S. W.: Reconstructing the<br> evolution of ice sheets, sea-level and atmospheric CO2 during the past 3.6 million years,<br> Geosciences, special issue “Developments in Modelling Palaeo-Ice Sheets”, 2019 (under review)
DOI: 10.17632/yzgpyvp29y.1
title: Data for: Effect of nickel addition on densification, microstructure and wear behaviour of spark plasma sintered CP-titanium

description: The data set represent the wear depth as a function of time and applied normal loads during the dry reciprocating sliding of Ti-Ni binary alloy against alloy steel counterface.
DOI: 10.6073/pasta/94d41263ef3f9f19e9ccd83d89b422fd
title: Monthly mean sea level data (1921-2018) relative to NAVD88 for Boston, Massachusetts, NOAA/NOS

description: Monthly sea level data for NOAA/NOS station 8443970, Boston, Massachusetts. The tide station is located on the right side of the U.S. Coast Guard Building adjacent to Northern Avenue Bridge. NOAA/NOS Center for Operational Oceanographic Products and Services (CO-OPS)