cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22700134.v1
title: Supplementary Material for: Optimal use of serum leucine-rich alpha-2 glycoprotein as a biomarker for small bowel lesions of Crohn's disease

description: Introduction A large proportion of small bowel lesions in Crohn’s disease (CD) may exist beyond the reach of ileocolonoscopy and there is no gold standard imaging modality to screen them, suggesting the need for optimal biomarkers. We aimed to compare the usefulness of C-reactive protein (CRP), faecal calprotectin (FC), and leucine-rich alpha-2 glycoprotein (LRG) in determining small bowel lesions of CD. Methods This was a cross-sectional observational study. CRP, FC, and LRG were prospectively measured in patients with quiescent CD who underwent imaging examinations (capsule or balloon-assisted endoscopy, magnetic resonance enterography, or intestinal ultrasound) selected by the physician in clinical practice. Mucosal healing (MH) of the small bowel was defined as a lack of ulcers. Patients with a Crohn’s disease activity index &gt; 150 and active colonic lesions were excluded. Results A total of 65 patients (27, MH; 38, small bowel inflammation) were analysed. The area under the curve (AUC) of CRP, FC, and LRG was 0.74 (95% confidence interval 0.61-0.87), 0.69 (0.52-0.81), and 0.77 (0.59-0.85), respectively. The AUC of FC and LRG in a subgroup of 61 patients with CRP &lt; 3 mg/l (26, MH; 32, small bowel inflammation) was 0.68 (0.50-0.81), and 0.74 (0.54-0.84), respectively. The cut-off of 16 μg/ml of LRG showed the highest positive predictive value of 1.00 with specificity of 1.00 while negative predictive value was highest (0.71) with sensitivity of 0.89 at the cut-off of 9 μg/ml. Discussion/Conclusion LRG can accurately detect and/or exclude the small bowel lesions by two cut-off values.
DOI: 10.35077/add-end
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1067605482

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1067605482', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1067605482', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1067605482', Locations:'CgGr' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.5281/zenodo.7867877
title: Ultrabroadband sound control with deep-subwavelength plasmacoustic metalayers - raw measurement data

description: The files in the archive relate to the frequency response data used in the graphical results presented in the paper "Ultrabroadband sound control with deep-subwavelength plasmacoustic metalayers" by Stanislav Sergeev, Romain Fleury, and Hervé Lissek. Data was recorded with the software: PULSE LabShop Fast Track Version 18.1.1.9 - 2014-01-16. File "alpha_absorption.txt" contains frequency response of absorption coefficient of active plasma metalayer tuned to 100% sound absorption (figure 3). First column - row number, second column - frequency in Hz, third column - magnitude. Files "R_04.txt", "R_07.txt", "R_09.txt" contain frequency response of complex reflection coefficient when plasma metalayer is tuned to various constant over frequency reflection coefficients (figure 4a). First column - row number, second column - frequency in Hz, third column - real part, fourth column - imaginary part. Files "R_04_0cm.txt", "R_04_05cm.txt", "R_04_10cm.txt", "R_04_15cm.txt" contain frequency response of complex reflection coefficient when plasma metalayer is tuned to constant over frequency reflection coefficient of magnitude 0.4 and different linearly changing phases (figure 4b). First column - row number, second column - frequency in Hz, third column - real part, fourth column - imaginary part. File "R_04_10cm.txt" was measured at 4 cm further plane. To be consistent with the other data, phase should be corrected by 4 cm shift.
DOI: 10.5281/zenodo.7867876
title: Ultrabroadband sound control with deep-subwavelength plasmacoustic metalayers - raw measurement data

description: The files in the archive relate to the frequency response data used in the graphical results presented in the paper "Ultrabroadband sound control with deep-subwavelength plasmacoustic metalayers" by Stanislav Sergeev, Romain Fleury, and Hervé Lissek. Data was recorded with the software: PULSE LabShop Fast Track Version 18.1.1.9 - 2014-01-16. File "alpha_absorption.txt" contains frequency response of absorption coefficient of active plasma metalayer tuned to 100% sound absorption (figure 3). First column - row number, second column - frequency in Hz, third column - magnitude. Files "R_04.txt", "R_07.txt", "R_09.txt" contain frequency response of complex reflection coefficient when plasma metalayer is tuned to various constant over frequency reflection coefficients (figure 4a). First column - row number, second column - frequency in Hz, third column - real part, fourth column - imaginary part. Files "R_04_0cm.txt", "R_04_05cm.txt", "R_04_10cm.txt", "R_04_15cm.txt" contain frequency response of complex reflection coefficient when plasma metalayer is tuned to constant over frequency reflection coefficient of magnitude 0.4 and different linearly changing phases (figure 4b). First column - row number, second column - frequency in Hz, third column - real part, fourth column - imaginary part. File "R_04_10cm.txt" was measured at 4 cm further plane. To be consistent with the other data, phase should be corrected by 4 cm shift.
DOI: 10.35077/add-fan
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1069242387

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1069242387', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1069242387', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1069242387', Locations:'SFG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-far
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1069256863

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1069256863', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1069256863', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1069256863', Locations:'SFG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.15784/601683
title: Carbon-13 isotopic composition of atmospheric methane across Heinrich Stadials 1 and 5, and Dansgaard Oesgher Event 12, WAIS Divide Ice Core, Antarctica

description: This dataset includes ~60-year resolution measurements of the Carbon-13 isotopic Composition of Atmospheric Methane (δ13C-CH4) of gas bubbles from the WAIS Divide Ice Core. All measurements were made at the Oregon State University Ice Core and Quaternary Geochemistry Laboratory (Corvallis, OR) using a new methane stable isotope analytical system. The data includes depth-adjacent replicate samples (separated by no more than 0.3m of depth) and is split up into two sheets for the two different intervals measured (Heinrich Stadial 1 and Heinrich Stadial 5 / Dansgaard Oeschger Event 12). The data are displayed as a function of WAIS Divide depth and were corrected for gravitational and diffusional fractionation that occurs in the firn column according to Buizert et al., 2013. 1-sigma measurement uncertainty is also included and is determined from analytical uncertainty and uncertainties associated with diffusional and gravitational fractionation. The manuscript presenting and analyzing these data is in preparation for publication as of April 2023.
DOI: 10.6084/m9.figshare.22700137
title: Raw data birds choices during trials, transfer and test

description: <br> ## Description of the Data and file structure <br> Réussite = success : 0=fail, 1=success essais = trials nbre d'essai réussi sur 15 essais : number of successful trials out of 15 trials test : OUI/O = success B / A = condition for context during the test
DOI: 10.6084/m9.figshare.22700137.v1
title: Raw data birds choices during trials, transfer and test

description: <br> ## Description of the Data and file structure <br> Réussite = success : 0=fail, 1=success essais = trials nbre d'essai réussi sur 15 essais : number of successful trials out of 15 trials test : OUI/O = success B / A = condition for context during the test
DOI: 10.35078/dx39t4
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Diamantina | Município: Itaramandiba

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.35077/add-fed
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1072170652

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1072170652', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1072170652', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1072170652', Locations:'SFG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.6084/m9.figshare.22674070
title: Table VI – Clinical implications of adhesive systems

description: <strong>Clinical implications of adhesive systems</strong>
DOI: 10.6084/m9.figshare.22674070.v1
title: Table VI – Clinical implications of adhesive systems

description: <strong>Clinical implications of adhesive systems</strong>
DOI: 10.35077/add-few
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1077530486

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1077530486', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1077530486', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1077530486', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.6084/m9.figshare.22586248
title: Supplementary Material for: Possible Spontaneous Extrusion of A Traumatic Deeply Embedded Intracorneal Foreign Body. A Case Report.

description: Traumatic intracorneal foreign bodies are very common and account for 30.8% of all ocular injuries. Deeply embedded intracorneal foreign bodies have been documented in association with good final visual outcome when managed effectively. Up to date there have been no reports of the benefits of careful observation and the expectant results. We report herein, an unusual case of possible spontaneously extruded deeply embedded intracorneal foreign body 5 weeks after sustaining a trauma to his right eye. Whether the foreign body was truly spontaneously extruded or absorbed by corneal tissue is unknown.
DOI: 10.6084/m9.figshare.22586248.v1
title: Supplementary Material for: Possible Spontaneous Extrusion of A Traumatic Deeply Embedded Intracorneal Foreign Body. A Case Report.

description: Traumatic intracorneal foreign bodies are very common and account for 30.8% of all ocular injuries. Deeply embedded intracorneal foreign bodies have been documented in association with good final visual outcome when managed effectively. Up to date there have been no reports of the benefits of careful observation and the expectant results. We report herein, an unusual case of possible spontaneously extruded deeply embedded intracorneal foreign body 5 weeks after sustaining a trauma to his right eye. Whether the foreign body was truly spontaneously extruded or absorbed by corneal tissue is unknown.
DOI: 10.35077/add-fib
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 681546151

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 681546151', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'681546151', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'681546151', Locations:'TemL' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.6084/m9.figshare.22567216.v1
title: Supplementary Material for: High incidence of signs of neuropathy and self-reported substance use disorder (SUD) for nitrous oxide (N2O) in patients intoxicated with N2O

description: Introduction: The number of patients with excessive nitrous oxide (N2O) use and neurological disorders has been rising, indicating an addictive potential of N2O. We studied the incidence of self-reported substance use disorder (SUD)-related symptoms, signs of neuropathy and the patterns of use in N2O intoxicated patients. Methods: The Dutch Poisons Information Center (DPIC) provides information by telephone on the management of intoxications to healthcare professionals. Retrospective data on signs of neuropathy and patterns of use were collected for all N2O intoxications reported to the DPIC in 2021 and 2022. Frequent and heavy use were self-reported as “often/frequent/weekly use” and as “use of tanks or &gt;50 balloons/session”, respectively. From this cohort, we included patients with excessive N2O use or signs of neuropathy in a prospective observational cohort study. Online surveys were sent 1 week, 1 month and 3 months after DPIC consultation. The survey included the DUD questionnaire (validated to measure self-reported substance abuse (SA) and dependence (SD) based on DSM-IV-TR criteria), and questions on patterns of use and signs of neuropathy. DSM-IV-TR criteria were translated to DSM-V criteria to score for mild, moderate or severe substance use disorder (SUD), with 2-3, 4-5 or ≥6 symptoms respectively. Results: We included 101 N2O intoxicated patients in the retrospective study. Of these, 41% showed signs of neuropathy (N=41), 53% used N2O tanks to fill balloons (N=53), 71% used frequently (N=72) and 76% used heavily (N=77). We included 75 patients in the prospective study and 10 (13%) completed the first survey. All 10 patients fulfilled the criteria for SA and SD (DSM-IV-TR, median number of questions answered “yes”= 10/12), all used N2O tanks to fill balloons, and 90% (N=9) experienced signs of neuropathy. After 1 and 3 months, 6/7 and 1/1 patients respectively, continued to fulfill SA and SD criteria. Translating to DSM-V criteria, 1/10 patients fulfilled the critera for (self-reported) mild SUD, 1/10 patients for moderate SUD and 8/10 patients for severe SUD, 1 week after consultation. Discussion/Conclusion: The high proportion of N2O intoxicated patients reporting frequent and heavy use of N2O indicates an addictive potential of N2O. Although follow-up rate was low, all patients fulfilled self-reported SA, SD (DSM-IV-TR), and SUD (DSM-V) criteria for N2O. Somatic healthcare professionals treating patients with N2O intoxications, should be aware of possible addictive behaviour in patients. The screening, brief intervention, and referral to treatment (SBIRT) approach should be considered to treat patients with self-reported SUD symptoms.
DOI: 10.5281/zenodo.7867883
title: Calculated data from Thermodynamic modelling of the nature of speciation and phase behaviour of binary and ternary mixtures of formaldehyde, water and methanol. MolPhys 2023

description: Calculated data in the figures of the publication.
DOI: 10.5281/zenodo.7867882
title: Calculated data from Thermodynamic modelling of the nature of speciation and phase behaviour of binary and ternary mixtures of formaldehyde, water and methanol. MolPhys 2023

description: Calculated data in the figures of the publication.
DOI: 10.35077/add-fig
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 695505884

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 695505884', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'695505884', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'695505884', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.5281/zenodo.7788721
title: Supplementary data for "Critically Evaluated Atomic Data for Au IV Spectrum"

description: Transition data for computing opacity of Au IV in the kilonova ejecta have been provided. These files are a part of the article, "Critically Evaluated Atomic Data for Au IV Spectrum" submitted to ApJS journal. The files named as "Au4_Levels_Opacity.txt" and "Au4_Lin_Opacity.txt" describe the energy levels of Au IV spectrum and its radiative line parameters for E1-type of transitions, respectively.