cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25810/vs5v-yp35
title: Data from "Circadian, Sleep and Caloric Intake Phenotyping in Type 2 Diabetes Patients with Rare Melatonin Receptor 2 Mutations and Controls: A Pilot Study"

description: Background: Melatonin modulates circadian rhythms in physiology and sleep initiation. Genetic variants of the MTNR1B locus, encoding the melatonin MT2 receptor, have been associated with increased type 2 diabetes (T2D) risk. Carriers of the common intronic MTNR1B rs10830963 T2D risk variant have modified sleep and circadian traits such as changes of the melatonin profile. However, it is currently unknown whether rare variants in the MT2 coding region are also associated with altered sleep and circadian phenotypes, including meal timing. Materials and Methods: In this pilot study, 28 individuals (50% male; 46-82 years old; 50% with rare MT2 mutations [T2D MT2]) wore actigraphy devices and filled out daily food logs for four weeks. We computed circadian, sleep, and caloric intake phenotypes, including sleep duration, timing, and regularity (assessed by the Sleep Regularity Index [SRI]), composite phase deviations (CPD) as a sleep timing-based proxy for circadian misalignment, and caloric intake patterns throughout the day. Using regression analyses, we estimated age- and sex-adjusted mean differences (MD) and 95% confidence intervals (95%CI) between the two patient groups. Secondary analyses also compare T2D MT2 to 15 healthy controls. Results: Patients with rare MT2 mutations had a later sleep onset (MD=1.23, 95%CI=0.42;2.04), and midsleep time (MD=0.91, 95%CI=0.12;1.70), slept more irregularly (MD in SRI=-8.98, 49 95%CI=-16.36;-1.60), had higher levels of behavioral circadian misalignment (MD in 50 CPD=1.21, 95%CI=0.51;1.92), were more variable in regards to duration between first caloric intake and average sleep offset (MD=1.08, 95%CI=0.07;2.08), and had more caloric episodes in a 24-hr day (MD=1.08, 95%CI=0.26;1.90), in comparison to T2D controls. Secondary analyses showed similar patterns between T2D MT2 and non-diabetic controls. Conclusion: This pilot study suggests that compared to diabetic and non-diabetic controls, T2D MT2 patients display a number of adverse sleep, circadian, and caloric intake phenotypes, including more irregular behavioral timing than T2D. A prospective study is needed to determine the role of these behavioral phenotypes in T2D onset and severity, especially in view of rare MT2 mutations.
DOI: 10.17632/j8c93b88h5.1
title: Data and reference for Fig. 1 a

description: The file contains the tensile strength and uniform elongation data of Fe and three steels and the related references.
DOI: 10.17632/cvh2d2bz6r.1
title: Beauty is the Eye of the Cultural Beholder

description: Data realting to the paper 'Beauty is the Eye of the Cultural Beholder'
DOI: 10.17632/6jpt8b7g8t.1
title: Small-Molecule Modulation of TDP-43 Recruitment to Stress Granules Prevents Persistent TDP-43 Accumulation in ALS/FTD

description: Raw and analyzed data for "Small-Molecule Modulation of TDP-43 Recruitment to Stress Granules Prevents Persistent TDP-43 Accumulation in ALS/FTD."
DOI: 10.17632/wnywpty3pj.1
title: Using Flash Profiling to direct quality-focused breeding strategies

description: Research data uploaded here provide the clean data for the consumer evaluation of six collard/sukuma wiki (Brassica oleracea) genotypes in Upstate New York and Western Kenya. Flash Profiling and consumer acceptance testing were conducted in both regions. These data have been cleaned and formatted from raw datasets; they are ready for downstream analysis.
DOI: 10.17632/sxpfkty7dw.2
title: Raw data related to DELTEX2 C-terminal domain recognizes and recruits ADP-ribosylated proteins for ubiquitination

description: Crosstalk between ubiquitination and ADP-ribosylation regulates spatio-temporal recruitment of key players during DNA damage repair (DDR). The Deltex family of ubiquitin ligases (DTX1–4 and DTX3L), are characterized by a RING domain followed by a C-terminal domain (DTC) of unknown function; four Deltex proteins have other domains or partner proteins for binding poly-ADP-ribose (PAR), suggesting a role for these proteins in mediating crosstalk between ubiquitination and ADP-ribosylation. Here, we use two label-free mass spectrometry techniques to identify substrates of human DTX2 and uncover a new ADP-ribose-binding domain that facilitates PAR-dependent ubiquitination.
DOI: 10.17632/jwc4rr6kwr.4
title: le Roux et al 2020_PNAS_Animal body size distribution influences the ratios of nutrients supplied to plants

description: This data accompanies the following manuscript: le Roux et al 2020 PNAS Animal body size distribution influences the ratios of nutrients supplied to plants All relevant information is contained within this manuscript. https://www.pnas.org/content/early/2020/08/19/2003269117
DOI: 10.17632/xcrmb7m7y8.1
title: Data for: Molecular characterization of the 5S rDNA non transcribed spacer and reconstruction of phylogenetic relationships in Capsicum

description: This contribution contains data associated to the research article entitled “Molecular characterization of the 5S rDNA non transcribed spacer and reconstruction of phylogenetic relationships in Capsicum” [1]. By means of molecular and computational biology approaches involving extensive data analyses, we provide a resource encompassing the full characterization and annotation of the 5S ribosomal (rDNA) non transcribed spacer (NTS) of chili peppers and overall related sequences in Solanaceae at DDBJ/ENA/GenBank [2]. The generated data is pivotal for upcoming characterization and reference annotation of comparable repetitive regions throughout the family and related taxa, from small to genomic scale projects, and become an essential resource for germplasm characterization and evolutionary studies in Solanaceae. The fully annotated sequencing data of chili peppers presented here is available at the Nucleotide database of the DDBJ/ENA/GenBank under the accessions MK650892-1009 and JF773766.
DOI: 10.17632/ckdd39bst2.2
title: SOS-10-E in Ecuador

description: Data used for the paper: "The Spanish Translation of the Schwartz Outcome Scale-10 (SOS-10-E) outside the United States: Acceptability and psychometric properties in a Latin American context" In separate files (.txt) the data for the clinical ("DBSOSClinical.txt") and for the non-clinical ("DBSOSNonClinical.txt") samples. The separator used is comma " , "
DOI: 10.17632/cg7ktc3zvy.1
title: Confidence and competency in the use of dermoscopy among new first-year dermatology residents: a repeated-pairs pre-/post-assessment study of an online learning module

description: Online Learning Module, Supplemental Methods and Figure
DOI: 10.17632/2c4cwmvcs8.1
title: ATMO-Vent: an adapted breathing atmosphere for COVID-19 patients

description: The repository contains the design files and related documents to build the hardware and software of the ATMO-Vent ventilator and the instructions to replicate its operation. This repository was published with the HardwareX article titled, "ATMO-Vent: an adapted breathing atmosphere for COVID-19 patients". Disclaimer: The designs and other information (the "Design") made available in this article is at an early stage of development. Accordingly, specific results are not be guaranteed, and the Design provided here is provided “AS IS” and without any express or implied warranties, representations or undertakings. As examples, but without limiting the foregoing, the University of Aberdeen, Luleå University of Technology, Centro de Astrobiologia (CSIC-INTA), IACT (CSIC-UGR) and their employees and students do not give any warranty or guarantee that the Design is of merchantable or satisfactory quality, is fit for any particular purpose, complies with any sample or description including the requirements for medical device registration, or are viable, uncontaminated, safe or non-toxic, accurate, up to date or complete. The University of Aberdeen, Luleå University of Technology, Centro de Astrobiologia (CSIC-INTA), IACT (CSIC-UGR) and the authors have not performed any searches or investigations into the existence of any third-party rights that may affect the Design. Anyone may use the Design entirely at their own risk, and the University of Aberdeen, Luleå University of Technology, Centro de Astrobiologia (CSIC-INTA), IACT (CSIC-UGR), and/or the authors are not liable for such use of the Design, including without limitation any direct or indirect losses. Any users of the design should appropriately attribute the author.
DOI: 10.17632/sgj285n9ny.1
title: The Psychological Impact of the COVID-19 Pandemic on University Students in Pakistan

description: The Psychological Impact of the COVID-19 Pandemic on University Students in Pakistan
DOI: 10.17632/stdmys22gk.1
title: Survey of the Level of Preparedness and Fears of Anaesthesia Staff regarding the Management of COVID-19 patients in ABUTH Zaria-Nigeria

description: This is a survey of the level of preparedness and fears of anaesthesia department staff regarding the management of COVID-19 patients in a low resource tertiary hospital in Zaria, Nigeria. During the period April 11-18, 2020 structured questionnaires were sent out by WhatsApp to physician anaesthetists, nurse anaesthetists, intensive care nurses, biomedical engineers and health assistants in ABUTH Zaria and those who consented filled and returned the questionnaires. Data obtained include age, gender, marital status, professional role, level of preparedness, availability of working materials/equipment, fear of COVID-19, level of stress, stigmatization and the willingness or otherwise to volunteer in the management of COVID-19 patients. Information collected were analyzed using SPSS version 21. The level of significance was set at p&lt;0.05.
DOI: 10.17632/44nkkp8szc.1
title: Effects of Extracellular Potassium on Calcium Handling and Force Generation in a Model of Excitation-Contraction Coupling in Skeletal Muscle
DOI: 10.17632/svhmy6p9t2.1
title: Processed data for: A global assessment of barely visible impact damage for CFRP sub-components with FBG-based sensors

description: Processed data for "A global assessment of barely visible impact damage for CFRP sub-components with FBG-based sensors". Barely visible impact damage (BVID) on carbon fibre reinforced polymer (CFRP) aerospace components can create interlaminar defects that may deteriorate during operation with potential failure as a result. Especially damage-prone regions such as the feet of a stiffener must therefore be inspected for BVIDs frequently, which is an effort that increases downtimes and operational costs. The potential of optical fibre sensors as part of a permanently installed structural health monitoring network is well-known. Individual FBG-based strain sensors have shown their capability to detect BVIDs. In this work we introduce a global damage index (GDI) as a figure of merit for the combined response of 60 FBG sensors mounted on several aerospace-grade CFRP flat stiffened panels. We first obtain a detection threshold for the GDI and then demonstrate its use for BVID detection. The proposed methodology is the first of its kind for the representation of the health of a component in a single parameter. The data set includes the damage indicators as calculated from the spectra, and global damage indices (GDI) as calculated from the damage indicators for every impact.
DOI: 10.17632/9gv36gk59k.1
title: Raw data for: A global assessment of barely visible impact damage for CFRP sub-components with FBG-based sensors

description: Raw data for '"A global assessment of barely visible impact damage for CFRP sub-components with FBG-based sensors". Barely visible impact damage (BVID) on carbon fibre reinforced polymer (CFRP) aerospace components can create interlaminar defects that may deteriorate during operation with potential failure as a result. Especially damage-prone regions such as the feet of a stiffener must therefore be inspected for BVIDs frequently, which is an effort that increases downtimes and operational costs. The potential of optical fibre sensors as part of a permanently installed structural health monitoring network is well-known. Individual FBG-based strain sensors have shown their capability to detect BVIDs. In this work we introduce a global damage index (GDI) as a figure of merit for the combined response of 60 FBG sensors mounted on several aerospace-grade CFRP flat stiffened panels. We first obtain a detection threshold for the GDI and then demonstrate its use for BVID detection. The proposed methodology is the first of its kind for the representation of the health of a component in a single parameter. The data set includes the spectral data at pristine state and after every damaged state as obtained by the Micron Optics SM125 spectral interrogator at 2 Hz for 30 sec. The data set also includes the spectral data and thermocouple data acquired during the climate chamber temperature calibration on panel 3.
DOI: 10.5281/zenodo.3878835
title: Effect of changing ocean circulation on deep ocean temperature in the last millennium: simulation output data

description: This dataset contains the output of model simulations used in the paper:<br> Scheen, Jeemijn and Stocker, Thomas F., "Effect of changing ocean circulation on deep ocean temperature in the last millennium", Earth System Dynamics Discussions, https://doi.org/10.5194/esd-2020-30, 2020 <br> All figures can be reproduced when combining this dataset with the published analysis code. <br> Download either the small (unzipped 5 Gb) or large (unzipped 22 Gb) version of the dataset. <strong>Warning: this is not only about storage, but this amount needs to be loaded into memory when running the notebook.</strong> You only need the small version to run the github notebook and reproduce the figures, but you are free to explore additional variables in the large version.
DOI: 10.17632/dx23dgjp46.1
title: email management

description: To obtain the data basis for the article "Email Management Strategies: Their Effects on Email Management Performance", we conducted an online-survey on the crowdsourcing platform Prolific in 2018. To increase the probability of respondents using email clients at work to a certain extent, we filtered the participant pool for their “industry role”, their “employment status”, and their “weekly working hours”. The industry role of the respondents was described as consultant, junior management, middle management, trained professional, or upper management. The employment status of the participants was either full-time or part-time. For the weekly working hours, we only included people who indicated that they worked more than twenty hours per week. The estimated completion time for the questionnaire was 10 minutes and every participant who completed the study received a reward of 1.50 pounds sterling. The questionnaire itself was programmed in Unipark . Before analyzing the data, we reconciled the survey data with the data provided by Prolific, which comprise all prescreening data and certain socio demographic data on the respondents. A total of 300 individuals took part in the online-survey. We had to exclude one dataset due to inconsistencies in the respondent’s answers between the two data sets. Thus, the sample for the data analysis consists of 299 individuals (144 females, 155 males). Because we had two missing entries due to age and weekly working hours, the number of individuals with full data sets was 297.
DOI: 10.17632/wtm6sygnmg.2
title: Single Cell Atlas of the Adult Drosophila Ovary

description: Data for Rust, et al., 2019
DOI: 10.17632/tjcw96n678.1
title: Research Apprenticeship Papers

description: Papers from Research Apprenticeship Course
DOI: 10.17632/jfnjyyyrfx.1
title: Escherichia coli small heat shock protein IbpA is an aggregation-sensor that self-regulates its own expression at a translational level

description: Data in "Escherichia coli small heat shock protein IbpA is an aggregation-sensor that self-regulates its own expression at a translational level" have been uploaded
DOI: 10.17632/8zcxr9wvrm.1
title: Corruption and Economic Data - International Economics Submission

description: Data set from research.
DOI: 10.17632/95vtmdjks3.2
title: Appendix A. Supplementary data

description: Data used in the paper
DOI: 10.17632/vn6mbrhh2j.1
title: Political instablity and growth at different stage of economic development: Historical evidence form Greece

description: This first dataset contains time series variables that range from 1830 to 2016 to explore the effect of political instability on economic growth of Greece. The second dataset includes data from twelve European countries during 1838-1859 to explore the growth effect of revolutionary events in Europe.
DOI: 10.17632/ymnw7xb6mv.1
title: Interaction action data

description: This dataset is part of the data recording students' learning interaction behaviors in one massive open onine course.
DOI: 10.17632/zckdpksks6.2
title: Making agricultural households cooperative: Experimental evidence from East Africa

description: This study investigates the impact of an intensive coaching package introducing participatory intrahousehold decision-making, randomly encouraged among monogamous couples in Ugandan and Tanzanian smallholder coffee farming households who participated in awareness raising, on the efficiency of couples’ investment and allocation decisions measured in a lab-in-the-field experiment. Two consecutive Voluntary Contribution Mechanism (VCM) games measured investment decisions, subsequent simultaneous modified dictator games allocation decisions. Free and costless in-game communication per couple preceded the second VCM game in a random two thirds of experiments. The effects of intensive coaching treatment, in-game communication and differential effects of communication in control and treatment group are estimated with models that include random effects for each couple and account for non-compliance with encouragement. The intensive coaching, versus only attending awareness raising, increased efficiency of couples’ allocation decisions in the track with and without in-game communication, but did not change couples’ investment decisions. Husbands and wives reacted differently to intensive coaching. It caused husbands to make more efficient allocation decisions in the track with and without communication; wives in the track with communication. In the second VCM game without communication, husbands’ positive reaction to intensive coaching significantly differs from wives’ slightly negative reaction. Unexpectedly, communication made investment decisions of husbands in the treatment and allocations decisions of husbands in the control group less efficient. To achieve intended outcomes, anticipating different reactions by husbands and wives to coaching in participatory decision-making and communication is essential, as is emphasizing the need for both spouses to contribute to efficient investments.
DOI: 10.17632/npcc7yrfjk.1
title: Oxysterol_LCMS/MS raw data_whole cell/mitochondria

description: Mass spectrometry data (raw mass spectra files) for whole cell and mitochondrial oxysterols derived from THP-1 monocytes and macrophages, SH-SY5Y and human peripheral blood mononuclear cells
DOI: 10.17632/jmc7hh53hh.1
title: Information and codes for construction of a neural-fuzzy model-based recommendation system

description: This database contains all the codes and data used for the construction of a neural fuzzy recommendation system. Here, a detailed report and evaluation of this recommendation system are given in the article entitled "A two-stage location-sensitive and user preference-aware recommendation system".
DOI: 10.17632/3hbsjy2fb8.1
title: Simulation of an unprotected transient of the ALLEGRO reactor using the coupled neutronics/thermal-hydraulics system code KIKO3DMG/ATHLET3.0
DOI: 10.17632/c45jzr8ksx.1
title: Tubifex tubifex complete mitochondrial genome

description: complete mitochondrial genome
DOI: 10.17632/k78rj37kkg.1
title: Dataset of biomass characteristics and net output power from downdraft biomass gasifier integrated power production unit

description: This dataset includes 1032 runs from a biomass downdraft gasifier integrated with power production unit (BG-PP) that is fed by 86 different types of biomasses from different groups (e.g. wood and woody biomasses, herbaceous and agricultural biomasses, animal biomasses, mixed biomasses and contaminated biomasses) and under various operating conditions. The dataset covers elemental and proximate analysis of various biomasses, operation conditions and the net output power from the BG-PP in each case/run. This article is via our another Elsevier journal as a co-submission, titled “Artificial neural network integrated with thermodynamic equilibrium modeling of downdraft biomass gasification-power production plant”. In fact, this dataset has been used to train and test the developed Artificial neural network modeling of a downdraft BG-PP in our paper.
DOI: 10.17632/dxy4dc86nc.1
title: Agreement between arterial and capillary pH, pCO2 and lactate in patients in the emergency department
DOI: 10.17632/y7rmztwrvn.1
title: chirpufnmr_code

description: Source code for the simulation described in the paper: "Frequency-swept pulses for ultrafast spatially encoded NMR"
DOI: 10.17632/3btg5jz9t8.1
title: Data from: Turon M, Angulo-Preckler C, Antich A, Præbel K & Wangensteen OS (2020). More than expected from old sponge samples: a natural sampler DNA metabarcoding assessment of marine fish diversity in Nha Trang Bay (Vietnam)

description: Sponges have recently been proposed as ideal candidates to act as natural samplers for environmental DNA due to their efficiency in filtering water. However, validation of the usefulness of DNA recovered from sponges to reveal vertebrate biodiversity patterns in Marine Protected Areas is still needed. Additionally, nothing is known about how different sponge species and morphologies influence the capture of environmental DNA and whether biodiversity patterns obtained from sponges are best described by quantitative or qualitative measures. In this study, we amplified and sequenced a vertebrate specific 12S MiFish barcode to unveil fine-scale patterns of fish communities from natural-sampler DNA retrieved from 64 sponges (16 species) located in eutrophic and well-preserved coral reefs in Nha Trang Bay (central Vietnam). 90 tropical fish species were identified from the sponges, corresponding to one third of the total local ichthyofauna reported from previous extensive conventional surveys. Significant differentiation in fish communities between eutrophic and well-preserved environments was observed, albeit eutrophication only explained a modest proportion of the variation between fish communities. Differences in efficiency of capturing fish environmental DNA among sponge species or morphologies were not observed. Overall, the majority of detected fish species corresponded to reef-associated small-sized species, as expected in coral reefs environments. Remarkably, pelagic, migratory, and deep-sea fish species were also recovered from sponge tissues, pointing out the ability of sponge natural sampled DNA to detect fishes that were not permanently associated to the biomes where the sponges were sampled. These results highlight the suitability of natural samplers as a cost-effective way to assess vertebrate diversity in hyper-diverse environments.