cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7802483.v1
title: MOESM2 of AntAngioCOOL: computational detection of anti-angiogenic peptides

description: Additional file 2. Supplementary Results. Results of feature selection and feature importance analysis.
DOI: 10.6084/m9.figshare.7802426
title: MOESM1 of Enhanced setup for wired continuous long-term EEG monitoring in juvenile and adult rats: application for epilepsy and other disorders

description: Additional file 1. Illustrative video of a continuous EEG recording in a rat using the swivel balance cage system. The system accommodates all sorts of ratâ s movements to the cageâ s corners, as well as climbing, jumping, turning around, reaching for food, and grooming.
DOI: 10.6084/m9.figshare.7802426.v1
title: MOESM1 of Enhanced setup for wired continuous long-term EEG monitoring in juvenile and adult rats: application for epilepsy and other disorders

description: Additional file 1. Illustrative video of a continuous EEG recording in a rat using the swivel balance cage system. The system accommodates all sorts of ratâ s movements to the cageâ s corners, as well as climbing, jumping, turning around, reaching for food, and grooming.
DOI: 10.6084/m9.figshare.7802363
title: Additional file 6: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

description: Table S3. Complete demographic information per patient. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.7802363.v1
title: Additional file 6: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

description: Table S3. Complete demographic information per patient. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.7802342
title: Additional file 3: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

description: Table S1. MaAsLin analysis of all available metadata categories to determine the significant associations between OTUs and metadata (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7802351
title: Additional file 4: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

description: Table S2. Relative abundance of significant genera as determined by MaAsLin analysis, per section of tissue. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.7802351.v1
title: Additional file 4: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

description: Table S2. Relative abundance of significant genera as determined by MaAsLin analysis, per section of tissue. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.7802342.v1
title: Additional file 3: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

description: Table S1. MaAsLin analysis of all available metadata categories to determine the significant associations between OTUs and metadata (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7802309
title: Additional file 4: of A simplified approach using Taqman low-density array for medulloblastoma subgrouping

description: Table S2. Report of DNA class prediction classifier using Random forest class prediction scores (classifier version 11. b4). (CSV 564 bytes)
DOI: 10.6084/m9.figshare.7802306
title: Additional file 6: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: Alignment of 369 ingroup and 4 outgroup concatenated sequences of CYTB, IRBP, RAG1 and D-loop. (NEXUS 1470 kb)
DOI: 10.6084/m9.figshare.7802300
title: Additional file 5: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: Complete list of individuals used in this study, with details on localities and genetic data. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.7802306.v1
title: Additional file 6: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: Alignment of 369 ingroup and 4 outgroup concatenated sequences of CYTB, IRBP, RAG1 and D-loop. (NEXUS 1470 kb)
DOI: 10.6084/m9.figshare.7802309.v1
title: Additional file 4: of A simplified approach using Taqman low-density array for medulloblastoma subgrouping

description: Table S2. Report of DNA class prediction classifier using Random forest class prediction scores (classifier version 11. b4). (CSV 564 bytes)
DOI: 10.6084/m9.figshare.7802297
title: Additional file 4: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: Maximum clade credibility tree from STACEY with PP support (nexus file). (NEXUS 24 kb)
DOI: 10.6084/m9.figshare.7802300.v1
title: Additional file 5: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: Complete list of individuals used in this study, with details on localities and genetic data. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.7802291
title: Additional file 3: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: ML phylogenetic tree based on RAG1 sequences (nexus file). (NEXUS 5 kb)
DOI: 10.6084/m9.figshare.7802294
title: Additional file 2: of A simplified approach using Taqman low-density array for medulloblastoma subgrouping

description: Table S1. TaqMan probes from the gene set used for MB molecular assignment. (CSV 787 bytes)
DOI: 10.6084/m9.figshare.7802297.v1
title: Additional file 4: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: Maximum clade credibility tree from STACEY with PP support (nexus file). (NEXUS 24 kb)
DOI: 10.6084/m9.figshare.7802291.v1
title: Additional file 3: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: ML phylogenetic tree based on RAG1 sequences (nexus file). (NEXUS 5 kb)
DOI: 10.6084/m9.figshare.7802294.v1
title: Additional file 2: of A simplified approach using Taqman low-density array for medulloblastoma subgrouping

description: Table S1. TaqMan probes from the gene set used for MB molecular assignment. (CSV 787 bytes)
DOI: 10.6084/m9.figshare.7802270
title: Additional file 1: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: Taxonomic classifications of the genus Acomys. Bold italic names represent species reported in particular lists, standard italics represent subspecies (in Ellerman [34]; Setzer [38]; Denys et al. [16]). (XLSX 41 kb)
DOI: 10.6084/m9.figshare.7802279
title: Additional file 2: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: ML phylogenetic tree based on IRBP sequences (nexus file). (NEXUS 6 kb)
DOI: 10.6084/m9.figshare.7802270.v1
title: Additional file 1: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: Taxonomic classifications of the genus Acomys. Bold italic names represent species reported in particular lists, standard italics represent subspecies (in Ellerman [34]; Setzer [38]; Denys et al. [16]). (XLSX 41 kb)
DOI: 10.6084/m9.figshare.7802279.v1
title: Additional file 2: of Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

description: ML phylogenetic tree based on IRBP sequences (nexus file). (NEXUS 6 kb)
DOI: 10.6084/m9.figshare.7802255
title: Additional file 2 of A comparison of DNA methylation in newborn blood samples from infants with and without orofacial clefts

description: Table S1. CpG probes with association P value less than 10−5 in any one of the cleft subtype analysis. Unconditional logistic regression model was used to test for association between DNA methylation M value and cleft status (shared controls vs. each cleft type). Covariables adjusted in each test are control surrogate variables, plate, gender, calendar year of baby’s birth, gestational age, and blood cell subtype composition. Table S2. Sensitivity analysis results by further adjusting for mother’s smoking status, BMI, drinking, folate intake and gestational age. Shown are CpG probes with association P value less than 10−5 in any one of the cleft subtype analysis. Unconditional logistic regression model was used to test for association between DNA methylation M value and cleft status (shared controls vs. each cleft type). Total covariables adjusted in each test are control surrogate variables, plate, gender, calendar year of baby’s birth, gestational age, blood cell subtype composition, smoking, BMI, drinking, folate intake and gestational age. Table S3. CpGs reported to be associated with cleft using Mendelian randomization analysis by Howe et al. 2018. Shown are the analysis results in NCL dataset: mean methylation level in control groups, all cleft case combined group(case), and case subgroups; case-control logistic regression estimated coefficient and P values for the combined case group and case subgroups. Table S4. Methylation means and association P values (controls compared to combined cleft cases) in Alvizi et al. (Scientific Reports, 2016) study and NCL study. Shown are the overlapped CpGs between NCL study and 578 CpGs reported by Alvizi et al. Table S5. Candidate gene results. Shown are CpGs around literature reported cleft-associated genes with methylation association P value less than 0.01 in any one of the cleft subtype analysis. Table S6. Differentially methylated regions (DMR) with Sidak multiple testing corrected P value
DOI: 10.6084/m9.figshare.7802255.v1
title: Additional file 2 of A comparison of DNA methylation in newborn blood samples from infants with and without orofacial clefts

description: Table S1. CpG probes with association P value less than 10−5 in any one of the cleft subtype analysis. Unconditional logistic regression model was used to test for association between DNA methylation M value and cleft status (shared controls vs. each cleft type). Covariables adjusted in each test are control surrogate variables, plate, gender, calendar year of baby’s birth, gestational age, and blood cell subtype composition. Table S2. Sensitivity analysis results by further adjusting for mother’s smoking status, BMI, drinking, folate intake and gestational age. Shown are CpG probes with association P value less than 10−5 in any one of the cleft subtype analysis. Unconditional logistic regression model was used to test for association between DNA methylation M value and cleft status (shared controls vs. each cleft type). Total covariables adjusted in each test are control surrogate variables, plate, gender, calendar year of baby’s birth, gestational age, blood cell subtype composition, smoking, BMI, drinking, folate intake and gestational age. Table S3. CpGs reported to be associated with cleft using Mendelian randomization analysis by Howe et al. 2018. Shown are the analysis results in NCL dataset: mean methylation level in control groups, all cleft case combined group(case), and case subgroups; case-control logistic regression estimated coefficient and P values for the combined case group and case subgroups. Table S4. Methylation means and association P values (controls compared to combined cleft cases) in Alvizi et al. (Scientific Reports, 2016) study and NCL study. Shown are the overlapped CpGs between NCL study and 578 CpGs reported by Alvizi et al. Table S5. Candidate gene results. Shown are CpGs around literature reported cleft-associated genes with methylation association P value less than 0.01 in any one of the cleft subtype analysis. Table S6. Differentially methylated regions (DMR) with Sidak multiple testing corrected P value
DOI: 10.6084/m9.figshare.7802240
title: Additional file 3: of An insight into the sialotranscriptome and virome of Amazonian anophelines

description: Figures S1–S12. in a single web format file. (MHT 7748 kb)
DOI: 10.6084/m9.figshare.7802240.v1
title: Additional file 3: of An insight into the sialotranscriptome and virome of Amazonian anophelines

description: Figures S1–S12. in a single web format file. (MHT 7748 kb)
DOI: 10.6084/m9.figshare.7802156
title: MOESM2 of Magnetotelluric transect of Unzen graben, Japan: conductors associated with normal faults

description: Additional file 2. Figure S2. Sounding curve of apparent resistivity (upper part, in â Śm) and phase (lower part, in degree) to the corresponding periods (in second) from all stations used in the 3-D inversion. (a) Sites numbered 1 to 12 and (b) sites numbered 13 to 25. The location of each station is explained in Additional file 1: Figure S1. Symbols and lines are detailed in the legend.
DOI: 10.6084/m9.figshare.7802156.v1
title: MOESM2 of Magnetotelluric transect of Unzen graben, Japan: conductors associated with normal faults

description: Additional file 2. Figure S2. Sounding curve of apparent resistivity (upper part, in â Śm) and phase (lower part, in degree) to the corresponding periods (in second) from all stations used in the 3-D inversion. (a) Sites numbered 1 to 12 and (b) sites numbered 13 to 25. The location of each station is explained in Additional file 1: Figure S1. Symbols and lines are detailed in the legend.
DOI: 10.6084/m9.figshare.7802141
title: Additional file 8: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: Table S7. Primer sequences used in the amplification of SNPs mapping to candidate genes located within QTL regions associated with fatty acid composition traits. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7802141.v1
title: Additional file 8: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: Table S7. Primer sequences used in the amplification of SNPs mapping to candidate genes located within QTL regions associated with fatty acid composition traits. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7802120
title: Additional file 5: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: Table S4. Genes located within QTL regions retrieved from the list of genes showing differential expression between the gluteus medius and longissimus dorsi muscles at different thresholds of fold-change (FC) and statistical significance. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7802120.v1
title: Additional file 5: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: Table S4. Genes located within QTL regions retrieved from the list of genes showing differential expression between the gluteus medius and longissimus dorsi muscles at different thresholds of fold-change (FC) and statistical significance. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7802111
title: Additional file 4: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: Table S3. List of microRNA and long intergenic non-coding RNA genes mapping to the SSC14 QTL identified in the current work. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7802111.v1
title: Additional file 4: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: Table S3. List of microRNA and long intergenic non-coding RNA genes mapping to the SSC14 QTL identified in the current work. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7802093
title: Additional file 2: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: Table S2. Pathway Enrichment for genes differentially expressed between the gluteus medius and longissimus dorsi muscles (|FC| &gt; 1.5; q-value
DOI: 10.6084/m9.figshare.7802093.v1
title: Additional file 2: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: Table S2. Pathway Enrichment for genes differentially expressed between the gluteus medius and longissimus dorsi muscles (|FC| &gt; 1.5; q-value
DOI: 10.6084/m9.figshare.7802087
title: Additional file 1: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: Table S1. List of genes differentially expressed between the gluteus medius and longissimus dorsi muscles (|FC| &gt; 1.5; q-value
DOI: 10.6084/m9.figshare.7802087.v1
title: Additional file 1: of Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: Table S1. List of genes differentially expressed between the gluteus medius and longissimus dorsi muscles (|FC| &gt; 1.5; q-value
DOI: 10.6084/m9.figshare.7802033
title: Supplementary Table S5.xlsx

description: Characterization of the key role of dachshund b in the development of the pancreatic islet in zebrafish (Danio rerio)
DOI: 10.6084/m9.figshare.7802066
title: Statistics.pdf

description: Statistc data that was produced on the basis of the dataset
DOI: 10.6084/m9.figshare.7802033.v1
title: Supplementary Table S5.xlsx

description: Characterization of the key role of dachshund b in the development of the pancreatic islet in zebrafish (Danio rerio)
DOI: 10.6084/m9.figshare.7802054
title: DATA_Anonymized.xlsx

description: Final patient's list with all the measurments of ONSD, ETD and index.
DOI: 10.6084/m9.figshare.7802066.v1
title: Statistics.pdf

description: Statistc data that was produced on the basis of the dataset
DOI: 10.6084/m9.figshare.7802030
title: Supplementary Table S4.xlsx

description: Characterization of the key role of dachshund b in the development of the pancreatic islet in zebrafish (Danio rerio)
DOI: 10.6084/m9.figshare.7802054.v1
title: DATA_Anonymized.xlsx

description: Final patient's list with all the measurments of ONSD, ETD and index.
DOI: 10.6084/m9.figshare.7802030.v1
title: Supplementary Table S4.xlsx

description: Characterization of the key role of dachshund b in the development of the pancreatic islet in zebrafish (Danio rerio)
DOI: 10.6084/m9.figshare.7801886
title: C/EBPβ mediates palmitate-induced musclin expression via the regulation of PERK/ATF4 pathways in myotubes

description: <b>Supplemental Table S1 Quantitative real-time PCR primers.</b><b><br></b><b>Supplemental Table S2 Sh-RNA interference sequences.</b><b><br></b><b>Supplemental Table S3 sg RNAs sequences.</b>
DOI: 10.6084/m9.figshare.7801718
title: Full Data for SCCOHT repo

description: Dataset for https://github.com/joshbiology/sccoht
DOI: 10.6084/m9.figshare.7801718.v1
title: Other SCCOHT data

description: tmps
DOI: 10.6084/m9.figshare.7801718.v2
title: Other SCCOHT data

description: tmps
DOI: 10.6084/m9.figshare.7801331
title: Code for studying the relationship between Population abundance and Niche-Centroid Distance

description: Code to reproduce whole the analysis from the project "Predictive Relationships Between Population Densities and Niche-centroid Distances in North American Birds" using Rmarkdown.
DOI: 10.6084/m9.figshare.7801328
title: Neo-Nationalist Vote

description: Neo-nationalist party classification and vote in OECD countries between 1980 and 2015 (legislative elections).
DOI: 10.6084/m9.figshare.7801328.v1
title: Neo-Nationalist Vote

description: Neo-nationalist party classification and vote in OECD countries between 1980 and 2015 (legislative elections).
DOI: 10.6084/m9.figshare.7801328.v3
title: Neo-Nationalist Vote

description: Neo-nationalist party classification and vote in OECD countries between 1980 and 2015 (legislative elections).
DOI: 10.6084/m9.figshare.7801178
title: FcircSEC.zip

description: FcircSEC is a software for extracting full length circRNAs sequences using the output of circRNA prediction tools( such as CIRI, find_circ, CIRCexplorer, DCC etc.)<br>
DOI: 10.6084/m9.figshare.7801328.v2
title: Neo-Nationalist Vote

description: Neo-nationalist party classification and vote in OECD countries between 1980 and 2015 (legislative elections).
DOI: 10.6084/m9.figshare.7801331.v2
title: Code for studying the relationship between Population abundance and Niche-Centroid Distance

description: Code to reproduce whole the analysis from the project "Predictive Relationships Between Population Densities and Niche-centroid Distances in North American Birds" using Rmarkdown.
DOI: 10.6084/m9.figshare.7801148
title: Scripts

description: Code to perform all the analysis of the project "Predictive relationships between population densities and niche-centroid distances in North American birds"<br><br>1. <b>load_pkgs.R</b>: Contains code to install and load the R packages used in the analysis<br>2. <b>convexhullfuncs.R</b>: Helper functions to fit ellipsoids and convex hulls; plot abundance data using leaflet maps; estimate abundance patterns using environmental raster layers.<br>3. <b>correlation_funcPCA.R</b>: Estimate correlations between population abundance and niche-centroid distance<br>
DOI: 10.6084/m9.figshare.7801331.v3
title: Code for studying the relationship between Population abundance and Niche-Centroid Distance

description: Code to reproduce whole the analysis from the project "Predictive Relationships Between Population Densities and Niche-centroid Distances in North American Birds" using Rmarkdown.
DOI: 10.6084/m9.figshare.7801148.v1
title: Scripts

description: Code to perform all the analysis of the project "Predictive relationships between population densities and niche-centroid distances in North American birds"<br><br>1. <b>load_pkgs.R</b>: Contains code to install and load the R packages used in the analysis<br>2. <b>convexhullfuncs.R</b>: Helper functions to fit ellipsoids and convex hulls; plot abundance data using leaflet maps; estimate abundance patterns using environmental raster layers.<br>3. <b>correlation_funcPCA.R</b>: Estimate correlations between population abundance and niche-centroid distance<br>
DOI: 10.6084/m9.figshare.7801076
title: Trinity results of Chelidonium majus elaiosomes and seeds

description: Intermediate data files in <i>Transcriptome analysis of Chelidonium majus elaiosomes and seeds provide insights into fatty acid biosynthesis,</i> including Trinity results of raw data, all unigenes for all studied samples, and annotated unigenes
DOI: 10.6084/m9.figshare.7801076.v1
title: Trinity results of Chelidonium majus elaiosomes and seeds

description: Intermediate data files in <i>Transcriptome analysis of Chelidonium majus elaiosomes and seeds provide insights into fatty acid biosynthesis,</i> including Trinity results of raw data, all unigenes for all studied samples, and annotated unigenes