cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6676365
title: Evolved transcriptional responses and their trade-offs after long-term adaptation of Bemisia tabaci to a marginally-suitable host

description: Scripts and data used in the work "Evolved transcriptional responses and their trade-offs after long-term adaptation of Bemisia tabaci to a marginally-suitable host". <strong>Abstract: </strong>Although generalist insect herbivores can migrate and rapidly adapt to a broad range of host plants, they can face significant difficulties when accidentally migrating to novel and marginally-suitable hosts. What happens, at both the performance and transcriptional levels, if these marginally-suitable hosts must be used for multiple generations before migration to a suitable host can take place, largely remains unknown. In this study, we established multigenerational colonies of the whitefly <em>Bemisia tabaci</em>, a generalist phloem-feeding species, adapted to a marginally-suitable host (habanero pepper) or an optimal host (cotton). We used reciprocal host tests to estimate the differences in performance of the populations on both hosts under optimal (30 <sup>o</sup>C) and mild-stressful (24 <sup>o</sup>C) temperature conditions, and documented the associated transcriptomic changes. The habanero pepper-adapted population greatly improved its performance on habanero pepper but did not reach its performance level on cotton, the original host. It also showed reduced performance on cotton, relative to the non-adapted population, and an antagonistic effect of the lower-temperature stressor. The transcriptomic data revealed that most of the expression changes, associated with long-term adaptation to habanero pepper, can be categorized as “evolved” with no initial plastic response. Three molecular functions dominated: enhanced formation of cuticle structural constituents, enhanced activity of oxidation-reduction processes involved in neutralization of phytotoxins and reduced production of proteins from the cathepsin B family. Taken together, these findings indicate that generalist insects can adapt to novel host plants by modifying the expression of a relatively small set of specific molecular functions.
DOI: 10.5281/zenodo.6676364
title: Evolved transcriptional responses and their trade-offs after long-term adaptation of Bemisia tabaci to a marginally-suitable host

description: Scripts and data used in the work "Evolved transcriptional responses and their trade-offs after long-term adaptation of Bemisia tabaci to a marginally-suitable host". <strong>Abstract: </strong>Although generalist insect herbivores can migrate and rapidly adapt to a broad range of host plants, they can face significant difficulties when accidentally migrating to novel and marginally-suitable hosts. What happens, at both the performance and transcriptional levels, if these marginally-suitable hosts must be used for multiple generations before migration to a suitable host can take place, largely remains unknown. In this study, we established multigenerational colonies of the whitefly <em>Bemisia tabaci</em>, a generalist phloem-feeding species, adapted to a marginally-suitable host (habanero pepper) or an optimal host (cotton). We used reciprocal host tests to estimate the differences in performance of the populations on both hosts under optimal (30 <sup>o</sup>C) and mild-stressful (24 <sup>o</sup>C) temperature conditions, and documented the associated transcriptomic changes. The habanero pepper-adapted population greatly improved its performance on habanero pepper but did not reach its performance level on cotton, the original host. It also showed reduced performance on cotton, relative to the non-adapted population, and an antagonistic effect of the lower-temperature stressor. The transcriptomic data revealed that most of the expression changes, associated with long-term adaptation to habanero pepper, can be categorized as “evolved” with no initial plastic response. Three molecular functions dominated: enhanced formation of cuticle structural constituents, enhanced activity of oxidation-reduction processes involved in neutralization of phytotoxins and reduced production of proteins from the cathepsin B family. Taken together, these findings indicate that generalist insects can adapt to novel host plants by modifying the expression of a relatively small set of specific molecular functions.
DOI: 10.20375/0000-000f-7432-6
title: Documentation-Data-Collection+Results.pdf
DOI: 10.20375/0000-000f-7433-5
title: Oxf0522.sav
DOI: 10.20375/0000-000f-7434-4
title: Oxf0522.xlsx
DOI: 10.20375/0000-000f-7435-3
title: questionnaire.pdf
DOI: 10.5281/zenodo.7048449
title: On the Application of Machine Learning Models to Assess and Predict Software Reusability

description: This is the dataset, results and notebook for the submission into Maltesque 2022 conference.
DOI: 10.5281/zenodo.7048451
title: On the Application of Machine Learning Models to Assess and Predict Software Reusability

description: This is the dataset, results and notebook for the submission into Maltesque 2022 conference.
DOI: 10.34740/kaggle/ds/2502936
title: Idealista Madrid Rental Real State
DOI: 10.5281/zenodo.7111293
title: amphioctopus_burryi_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111292
title: amphioctopus_burryi_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111296
title: benthoctopus_eicomar_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111295
title: benthoctopus_eicomar_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111316
title: enteroctopus_dofleini_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111315
title: enteroctopus_dofleini_zanfona_1.fasta.gz

description: .
DOI: 10.34740/kaggle/dsv/4247582
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.7111325
title: muusoctopus_leioderma_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111324
title: muusoctopus_leioderma_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111333
title: muusoctopus_longibrachus_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111332
title: muusoctopus_longibrachus_zanfona_1.fasta.gz

description: .
DOI: 10.25810/jck1-hf50.53
title: United States Newspaper Coverage of Climate Change or Global Warming, 2000-2022 - August 2022

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5281/zenodo.7111337
title: octopus_americanus_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111336
title: octopus_americanus_zanfona_1.fasta.gz

description: .
DOI: 10.21227/7gkv-3h45
title: Supplementary Material: Optimization of Low-weight Cargo UAV with Real-time Controller by CAD Design, FEM Simulation and Dynamic Modeling

description: "In this article, we present a novel approach to designing and optimizing unmanned aerial vehicles (UAVs) to carry low-weight cargo. Various computational design techniques are involved, including the computer-aided design (CAD) of the aircraft's mechanical components and the simulation of its structural and material properties by finite elements methods (FEM). Mathematical models were also used to describe and improve the rotodynamic stability, control, and weight-carrying capacity of the UAV. Based on these, an all-aluminum UAV with a real-time controller was prototyped and test-flown severally with payloads of different weights. Results show that our UAV system is optimal and aerodynamically efficient for low-weight cargo deployment. Additional testing demonstrates the energy-efficiency and suitability of our UAV for logistical, remote sensing, and agricultural applications "(Curled from the related article).
DOI: 10.25810/c862-0e81.53
title: US Television Coverage of Climate Change or Global Warming, 2000-2022 - August 2022

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.34740/kaggle/dsv/4247662
title: 2021 World Population (updated daily)
DOI: 10.25810/4c3b-b819.53
title: World Newspaper Coverage of Climate Change or Global Warming, 2004-2022 - August 2022

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.25810/k55w-7a04.53
title: World Radio Coverage of Climate Change or Global Warming, 2000-2022 - August 2022

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5281/zenodo.7111368
title: octopus_bimaculoides_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111367
title: octopus_bimaculoides_zanfona_1.fasta.gz

description: .
DOI: 10.6084/m9.figshare.21202577
title: Unrealistic optimism and emotions

description: A dataset from the study concerning the unrealistic optimism, anxiety caused by the COVID-19 pandemic, emotions and preventive behaviors.
DOI: 10.6084/m9.figshare.21202577.v1
title: Unrealistic optimism and emotions

description: A dataset from the study concerning the unrealistic optimism, anxiety caused by the COVID-19 pandemic, emotions and preventive behaviors.
DOI: 10.6084/m9.figshare.21202568
title: data_suicides.xlsx

description: Data set for article: "Suicide rates in the Historical Lands of the First Czechoslovak Republic (1918–1938)"
DOI: 10.6084/m9.figshare.21202568.v1
title: data_suicides.xlsx

description: Data set for article: "Suicide rates in the Historical Lands of the First Czechoslovak Republic (1918–1938)"
DOI: 10.34740/kaggle/dsv/4247788
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.7111378
title: octopus_maya_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111377
title: octopus_maya_zanfona_1.fasta.gz

description: .
DOI: 10.6084/m9.figshare.14725285
title: Implementing bridge model updating for operation and maintenance purposes: examination based on UK practitioners’ views

description: There has been a vision of creating bridge digital twins as virtual simulation models of bridge assets to facilitate remote management. Bridge model updating is one digital twin technology which can enable the continuous updating of the structural model as new monitoring data is collected. This paper examines why there is currently little industry uptake of monitoring, modelling and model updating for the operation and maintenance of bridges despite over two decades of research in these fields. The study analyses the findings from a series of semi-structured industry interviews with expert bridge professionals in the U.K. and from an extensive literature survey of bridge model updating studies to examine the disconnects between research and practice and the practical issues of implementing bridge model updating. In particular, the study found that localised damage resulting in local reduction in structural stiffness, a key assumption made in the majority of research, is subject to question by practitioners as many common types of bridge damage may not induce noticeable change in structural stiffness that existing model updating techniques would identify. Key recommendations for future research are proposed to drive adoption of bridge monitoring, modelling and model updating and thus realise their industrial value.
DOI: 10.6084/m9.figshare.14725285.v1
title: Implementing bridge model updating for operation and maintenance purposes: examination based on UK practitioners’ views

description: There has been a vision of creating bridge digital twins as virtual simulation models of bridge assets to facilitate remote management. Bridge model updating is one digital twin technology which can enable the continuous updating of the structural model as new monitoring data is collected. This paper examines why there is currently little industry uptake of monitoring, modelling and model updating for the operation and maintenance of bridges despite over two decades of research in these fields. The study analyses the findings from a series of semi-structured industry interviews with expert bridge professionals in the U.K. and from an extensive literature survey of bridge model updating studies to examine the disconnects between research and practice and the practical issues of implementing bridge model updating. In particular, the study found that localised damage resulting in local reduction in structural stiffness, a key assumption made in the majority of research, is subject to question by practitioners as many common types of bridge damage may not induce noticeable change in structural stiffness that existing model updating techniques would identify. Key recommendations for future research are proposed to drive adoption of bridge monitoring, modelling and model updating and thus realise their industrial value.
DOI: 10.34740/kaggle/dsv/4247885
title: Elon Musk Tweets
DOI: 10.6084/m9.figshare.21202601
title: A meta-analysis of shrub density as a predictor of animal abundance Papers with DOI and publication year

description: The following table includes papers used in the systematic review of our manuscript including title, year of publication and DOI.
DOI: 10.6084/m9.figshare.21202601.v1
title: A meta-analysis of shrub density as a predictor of animal abundance Papers with DOI and publication year

description: The following table includes papers used in the systematic review of our manuscript including title, year of publication and DOI.
DOI: 10.34740/kaggle/dsv/4220554
title: ECB speeches etc. 1997 to 2022-09-25
DOI: 10.34740/kaggle/dsv/4247900
title: ECB speeches etc. 1997 to 2022-09-25
DOI: 10.6084/m9.figshare.19772866
title: Data from: Genomic consequences and selection efficacy in sympatric sexual versus asexual kelps

description: <em><strong>Abstract</strong></em> Genetic diversity can influence resilience and adaptative capacity of organisms to environmental change. Genetic diversity within populations is largely structured by reproduction, with the prevalence of asexual versus sexual reproduction often underpinning important diversity metrics that determine selection efficacy. Asexual or clonal reproduction is expected to reduce genotypic diversity and slow down adaptation through reduced selection efficacy, yet the evolutionary consequences of clonal reproduction remain unclear for many natural populations. Here, we examine the genomic consequences of sympatric sexual (haplodiplontic) and clonal morphs of the kelp<em> Ecklonia radiata </em>that occur interspersed on reefs in Hamelin Bay, Western Australia. Using genome-wide single nucleotide polymorphisms, we confirm significant asexual reproduction for the clonal populations, indicated by a significantly lower number of multi-locus lineages and higher intra-individual diversity patterns (individual multi-locus heterozygosity, MLH). Nevertheless, co-ancestry analysis and breeding experiments confirmed that sexual reproduction by the clonal morph and interbreeding between the two morphs is still possible, but varies among populations. One clonal population with long-term asexuality showed trends of decreased selection efficacy (increased ratio non- vs. synonymous gene diversities). Yet, all clonal populations showed distinct patterns of putative local adaptation relative to the sexual morph, possibly indicating maladaptation to local environmental conditions and high vulnerability of this unique clonal morph to environmental stress. <br> <em><strong>Data</strong></em> SNP datafile: HamelinClean.vcf<br> SNP input file used for population analysis popmap file: popmapHamelinClean.txt<br> population file used for analysis <br> id = sampleID<br> site= siteID
DOI: 10.6084/m9.figshare.21202616.v1
title: Li & Dai (2022). Post-pandemic TNHE in China_Supplementary Materials.docx

description: This dataset contain 1) a brief list of policy development in China's TNHE (CFCRS) from 1978 to 2021; 2) an inexhaustive list of "internationalization at home" (IaH) programs in China during Covid-19 and its relevant data sources; 3) China's pandemic TNHE policy themes and comparison of years 2020, 2021, and 2022.
DOI: 10.5281/zenodo.7111366
title: DeepSelectNet: Deep Neural Network Based Selective Sequencing for Oxford Nanopore Sequencing

description: Curated dataset for the manuscript named "DeepSelectNet: Deep Neural Network Based Selective Sequencing for Oxford Nanopore Sequencing". Five publicly available datasets sequenced on ONT MinION/GridION were used for the experiments (see below for original sources). These datasets contained raw signal data in single-FAST5 format (one file per each read), which were converted to BLOW5 format using slow5tools to enable convenient and efficient file manipulation. Then, 40,000 reads containing at least 4500 signal samples were extracted from each dataset. From each dataset, 20,000 reads are for training (&lt;species&gt;/train-&lt;species&gt;.blow5) and the rest for testing (&lt;species&gt;/test-&lt;species&gt;.blow5). Basecalled reads for the dataset used for testing are also available (test-&lt;species&gt;.fastq). Guppy version 6.1.3 under dna_r9.4.1_450bps_hac mode was used. The reference genomes are also given (&lt;species&gt;/&lt;species&gt;-ref.fasta) Original datasets are from the following sources:<br> SARS-CoV-2: https://community.artic.network/t/links-to-raw-fast5-fastq-data-for-artic-protocol/17<br> Zymo Metagenome: https://github.com/LomanLab/mockcommunity<br> Chlamydomonas: https://sra-download.ncbi.nlm.nih.gov/traces/era20/ERZ/003237/ERR3237140/Chlamydomonas_0.tar.gz<br> Saccharomyces cerevisiae: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA510813
DOI: 10.5281/zenodo.7111365
title: DeepSelectNet: Deep Neural Network Based Selective Sequencing for Oxford Nanopore Sequencing

description: Curated dataset for the manuscript named "DeepSelectNet: Deep Neural Network Based Selective Sequencing for Oxford Nanopore Sequencing". Five publicly available datasets sequenced on ONT MinION/GridION were used for the experiments (see below for original sources). These datasets contained raw signal data in single-FAST5 format (one file per each read), which were converted to BLOW5 format using slow5tools to enable convenient and efficient file manipulation. Then, 40,000 reads containing at least 4500 signal samples were extracted from each dataset. From each dataset, 20,000 reads are for training (&lt;species&gt;/train-&lt;species&gt;.blow5) and the rest for testing (&lt;species&gt;/test-&lt;species&gt;.blow5). Basecalled reads for the dataset used for testing are also available (test-&lt;species&gt;.fastq). Guppy version 6.1.3 under dna_r9.4.1_450bps_hac mode was used. The reference genomes are also given (&lt;species&gt;/&lt;species&gt;-ref.fasta) Original datasets are from the following sources:<br> SARS-CoV-2: https://community.artic.network/t/links-to-raw-fast5-fastq-data-for-artic-protocol/17<br> Zymo Metagenome: https://github.com/LomanLab/mockcommunity<br> Chlamydomonas: https://sra-download.ncbi.nlm.nih.gov/traces/era20/ERZ/003237/ERR3237140/Chlamydomonas_0.tar.gz<br> Saccharomyces cerevisiae: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA510813
DOI: 10.5281/zenodo.7111473
title: Microbial analysis of mouse and human pancreatic necrosis

description: AP was induced by partial duct ligation in C57Bl/6 or DEREG mice, in which regulatory T cells (T<sub>reg</sub>) were depleted by i.p. injection of diphtheria toxin. Microbiota composition was examined in intestinal samples as well as in murine and human pancreatic necrosis by 16S rRNA gene sequencing.
DOI: 10.5281/zenodo.7111472
title: Microbial analysis of mouse and human pancreatic necrosis

description: AP was induced by partial duct ligation in C57Bl/6 or DEREG mice, in which regulatory T cells (T<sub>reg</sub>) were depleted by i.p. injection of diphtheria toxin. Microbiota composition was examined in intestinal samples as well as in murine and human pancreatic necrosis by 16S rRNA gene sequencing.
DOI: 10.6084/m9.figshare.21202616
title: Post-pandemic TNHE in China_Supplementary Material.docx

description: This dataset contain 1) a brief list of policy development in China's TNHE (CFCRS) from 1978 to 2021; 2) an inexhaustive list of "internationalization at home" (IaH) programs in China during Covid-19 and its relevant data sources; 3) China's pandemic TNHE policy themes and comparison of years 2020, 2021, and 2022.
DOI: 10.6084/m9.figshare.21202616.v3
title: Post-pandemic TNHE in China_Supplementary Material.docx

description: This dataset contain 1) a brief list of policy development in China's TNHE (CFCRS) from 1978 to 2021; 2) an inexhaustive list of "internationalization at home" (IaH) programs in China during Covid-19 and its relevant data sources; 3) China's pandemic TNHE policy themes and comparison of years 2020, 2021, and 2022.
DOI: 10.6084/m9.figshare.21202616.v2
title: Post-pandemic TNHE in China_Supplementary Material.docx

description: This dataset contain 1) a brief list of policy development in China's TNHE (CFCRS) from 1978 to 2021; 2) an inexhaustive list of "internationalization at home" (IaH) programs in China during Covid-19 and its relevant data sources; 3) China's pandemic TNHE policy themes and comparison of years 2020, 2021, and 2022.
DOI: 10.6084/m9.figshare.21202637
title: Post-pandemic TNHE in China_Supplementary Material

description: This dataset contain 1) a brief list of policy development in China's TNHE (CFCRS) from 1978 to 2021; 2) an inexhaustive list of "internationalization at home" (IaH) programs in China during Covid-19 and its relevant data sources; 3) China's pandemic TNHE policy themes and comparison of years 2020, 2021, and 2022.
DOI: 10.6084/m9.figshare.21202637.v1
title: Post-pandemic TNHE in China_Supplementary Material

description: This dataset contain 1) a brief list of policy development in China's TNHE (CFCRS) from 1978 to 2021; 2) an inexhaustive list of "internationalization at home" (IaH) programs in China during Covid-19 and its relevant data sources; 3) China's pandemic TNHE policy themes and comparison of years 2020, 2021, and 2022.
DOI: 10.6084/m9.figshare.21202628
title: Datasets for Gray et al. Floral ultraviolet absorbance area responds plastically to ultraviolet irradiance in Brassica rapa

description: The following two datasets are for the paper Gray et al. Floral ultraviolet absorbance area responds plastically to ultraviolet irradiance in <em>Brassica rapa. </em>One file contains the data for the UV absorbing area (UV_experiment_FIGSHARE.xls) and the second contains data on flowering duration and number of flowers (Number of flowers and flowering duration.xls).
DOI: 10.5281/zenodo.7111535
title: hebomoia_glaucippe_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7111534
title: hebomoia_glaucippe_zanfona_1.fasta.gz

description: .
DOI: 10.6084/m9.figshare.21202683
title: Additional file 3 of A citation analysis and scoping systematic review of the operationalization of the Practical, Robust Implementation and Sustainability Model (PRISM)

description: Additional file 3.
DOI: 10.6084/m9.figshare.21202683.v1
title: Additional file 3 of A citation analysis and scoping systematic review of the operationalization of the Practical, Robust Implementation and Sustainability Model (PRISM)

description: Additional file 3.
DOI: 10.5281/zenodo.7111540
title: papilio_memnon_zanfona_1.fasta.gz

description: .