cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.413gc26/9
title: Herbs data at neighbourhood scale
DOI: 10.5061/dryad.47h01t4/1
title: Data_Rewa_Parameters

description: The data file includes information upon which the descriptive statistics in the paper are based on. The dataset contains the river surveyed, environmental parameters, number of bull sharks caught per trip and the corresponding date. The dataset, however, does not include exact sample locations or fishery-dependent data.
DOI: 10.5061/dryad.4b866r7/1
title: Data from: Evolutionary contribution to coexistence of competitors in microbial food webs
DOI: 10.5061/dryad.527d3f9/1
title: Mass loss and environmental data

description: This file contains data on litter mass loss and environmental conditions (litter quality + soil properties)
DOI: 10.5061/dryad.687m14t/1
title: Retention time and abundance of tyrosine and derivatives in Inga

description: Tyrosine content and the retention times and abundances of tyrosine, tyramine and DOPA gallate ions for each species and site. The ‘Species code’ is our identifier for both species and site. Codes beginning in 'Ing' are from Barro Colorado Island, Panama; 'LA' are from Los Amigos, Peru, 'M' are from Manaus (Km41), Brazil; 'N' are from Nouragues, French Guiana; and 'T' are from Tiputini, Ecuador. Exp and M are expanding and mature leaves, respectively, with ‘n’ indicating sample size. RT is retention time on the UPLC column. TIC is total ion count or ion abundance. Most species/site combinations had five independent UPLC-MS analyses; the exceptions are noted. All UPLC-MS analyses were as described in ‘Analysis of gallic acid depsides of tyrosine, tyramine and DOPA’. For this table, one sample with the highest signal was analyzed per species/site combination by searching for the m/z values given in Table S2. Since the ion abundances of these amines were consistently higher by factors of 6x to 60x for positive mode relative to negative mode, this analysis exclusively used positive mode data in order to maximize sensitivity.
DOI: 10.5061/dryad.687m14t/2
title: Transcriptomic data for Inga species

description: Quality metrics for transcriptomes. Quantity and quality of RNA, library size, Trinity assembly metrics and the percentage of contigs annotated through the Trinnotate pipeline.
DOI: 10.5061/dryad.687m14t/3
title: Recorded damage to Inga by insect herbivores separated by site and tyrosine expression

description: Herbivore damage to expanding leaves for species with and without tyrosine overexpression. Species that contained tyrosine-derivatives in addition to free tyrosine were included in the tyrosine-plus category. Data are from French Guiana (FG), Brazil (B), Peru (Pe) and Ecuador (E). Panama is excluded from the analysis as only one species contained tyrosine. An ANOVA exploring the effect of tyrosine status (T+ or T-) on herbivory showed lower damage for species without tyrosine (p &lt; 0.001).
DOI: 10.5061/dryad.6f462d4/1
title: TableS5_edg_dist_sq

description: Table S5: Square distance matrix for directional movement prior; needed to run STIMP model
DOI: 10.5061/dryad.6vm4qs4/1
title: Mean attractiveness rating score for male faces
DOI: 10.5061/dryad.6vm4qs4/2
title: Mean attractiveness rating score for female faces
DOI: 10.5061/dryad.7dd64gs/1
title: protein_data_MrBayes

description: Nexus file containing collagen alignments for extinct and extant xenarthrans. Also includes MrBayes block with specifications for running Bayesian topology search
DOI: 10.5061/dryad.7dd64gs/2
title: combined_data_MrBayes

description: alignment in nexus format containing collagen protein sequences and mitochondrial genomes as available for living and extinct xenarthrans. Also includes MrBayes block.
DOI: 10.5061/dryad.7dd64gs/3
title: protein_mtDNA_morphology_sloths_MRB

description: nexus file containing protein and mtDNA data plus the morphological character dataset from Varela et al., 2019.
DOI: 10.5061/dryad.7dd64gs/4
title: BEAST_protein_Xenarthra

description: xml file to run BEAST under fossilized birth death process with xenarthran proteomic data
DOI: 10.5061/dryad.7dd64gs/5
title: BEAST_combined_data_bradypus_constraint

description: xml file to run beast with combined proteomic and mitochondrial genome data. Note that this file enforces a monophyly constraint on Bradypus, which can be removed by commenting out the associated lines of the xml
DOI: 10.5061/dryad.8ct101p/1
title: Calcium fluorescence

description: fluorescence time series of imaged somas and neuropil across 3 epochs: 1 run behavior; 2 sleep box; 3 sleep box
DOI: 10.5061/dryad.8ct101p/2
title: LFP data

description: local field potential data from the pyramidal cell layer and stratum radiatum across 3 epochs: 1 run behavior; 2 sleep box; 3 sleep box
DOI: 10.5061/dryad.8ct101p/3
title: Position data

description: position time series across 3 epochs: 1 run behavior; 2 sleep box; 3 sleep box
DOI: 10.5061/dryad.ct40nm7/1
title: Archived data for: "MHC structuring and divergent allele advantage in a urodele amphibian: A hierarchical multi-scale approach"
DOI: 10.5061/dryad.cv66pm4/1
title: VignaCP_data

description: 1_fasta 2_worldmap 3_DNAsp 4_network 5_genalex 6_SAMOVA/AMOVA 7_NJtree 8_ABC
DOI: 10.5061/dryad.dk22g4h/15
title: PHJ89_plus_RTAs_snp_matrix_995238.txt.gz

description: SNP calls PHJ89 plus PHJ89-derived novel transcripts.
DOI: 10.5061/dryad.dk22g4h/16
title: Trinity_B73_unmapped_transcriptome_assembly.fasta

description: B73-derived novel transcripts.
DOI: 10.5061/dryad.dk22g4h/17
title: Trinity_PH207_unmapped_transcriptome_assembly.fasta

description: PH207-derived novel transcripts.
DOI: 10.5061/dryad.dk22g4h/18
title: Trinity_PHJ89_unmapped_transcriptome_assembly.fasta

description: PHJ89-derived novel transcripts.
DOI: 10.5061/dryad.dk22g4h/19
title: B73_plus_RTAs_snp_matrix_imputed.zip

description: widiv_942g_979873SNPs_imputed_filteredGenos_withRTA_AGPv4.hmp.txt - Imputed SNP calls B73 plus B73-derived novel transcripts. SNPs on contigs that are not part of the 10 chromosomes are coded as being on chromosome 11, and SNPs on RTAs are coded as being on chromosome 12.
widiv_942g_column_name_converter.txt - Converts genotype names between unimputed (column 'Original') and imputed (column 'NoSpaces').
DOI: 10.5061/dryad.dk22g4h/20
title: PH207_plus_RTAs_snp_matrix_imputed.zip

description: widiv_942g_971213SNPs_imputed_filteredGenos_withRTA_PH207ref.hmp.txt - Imputed SNP calls PH207 plus PH207-derived novel transcripts. SNPs on RTAs are coded as being on chromosome 11, and SNPs on contigs that are not part of the 10 chromosomes are coded as being on chromosome 12.
widiv_942g_column_name_converter.txt - Converts genotype names between unimputed (column 'Original') and imputed (column 'NoSpaces').
DOI: 10.5061/dryad.dk22g4h/21
title: phj89_final_asm.no_desc.min_1k.fa

description: Genome assembly of Z. mays PHJ89 - min1kb scaffolds.
DOI: 10.5061/dryad.dk22g4h/22
title: phj89_final_asm.no_desc.fa

description: Genome assembly of Z. mays PHJ89 - all scaffolds.
DOI: 10.5061/dryad.dk22g4h/23
title: BUSCO_result.zip

description: Folder contains the output files from running BUSCO on the PHJ89 genome assembly.
DOI: 10.5061/dryad.fd28113/1
title: Scenario_ME_q50

description: R script to simulate and anaylze data for the marker loss scenario.
DOI: 10.5061/dryad.fd28113/2
title: Scenario_HSP

description: R script used to simulate data for the heterogeneity in survival probability scenario.
DOI: 10.5061/dryad.fd28113/3
title: figures_ME

description: R script to develop raincloud plots for the marker loss scenario (Figure 2).
DOI: 10.5061/dryad.h825302/1
title: Geno_all

description: Genotype data for this publication.
DOI: 10.5061/dryad.h825302/2
title: Parent_key

description: Key to identify the inbred name from parental designation in the genotype file.
DOI: 10.5061/dryad.h825302/3
title: Pheno

description: Phenotypic data for ex-PVP inbreds testcrossed to three testers. Statistical analysis was done as described in the publication.
DOI: 10.5061/dryad.jn67k8n/5
title: Partition file used in RAxML

description: The gene partitions found in the multiple sequence alignment.
DOI: 10.5061/dryad.k7m5vf4/1
title: Model code
DOI: 10.5061/dryad.nv892mp/1
title: appendix e-1

description: Clinical characteristics of published biallelic DJ1 cases.
DOI: 10.5061/dryad.t46kr73/2
title: small_large
DOI: 10.17632/73g7yzw7w6.1
title: Data for: Sensorimotor contingency modulates breakthrough of virtual 3D objects during a breaking continuous flash suppression paradigm

description: The data files contain the behavioral and tracking data for both Experiment1 and Experiment2 in the CSV format. Each subject data is divided into sub folders with the subject number as the folder name. Please see ReadMeExp1.txt and ReadMeExp2.txt for the CSV format of the data file.
DOI: 10.17632/b3fdxwt7ws.1
title: Data for: Assessment and Retrofitting of an Existing Steel Structure subjected to Wind-Induced Failure Analysis

description: Analysis input files
DOI: 10.17632/nkhzfkbscb.1
title: Data for: Reliable Preparation of Agarose Phantoms for Use in Quantitative Magnetic Resonance Elastography

description: JMBBM_2019_51 Processed Dataset
DOI: 10.17632/nkhzfkbscb.2
title: Data for: Reliable Preparation of Agarose Phantoms for Use in Quantitative Magnetic Resonance Elastography

description: JMBBM_2019_51 Processed Dataset
DOI: 10.17632/y92yrvhvrr.1
title: Data for: Upper ocean oxygenation, evolution of Rubisco and the Phanerozoic succession of Phytoplankton

description: Compilation of biochemical kinetic data from Ribulose‐1,5‐bisphosphate carboxylase/ oxygenase (RuBisCO, EC 4.1.1.39)
DOI: 10.5061/dryad.0r75421/1
title: F2_CTmax_CTmin

description: This dataset contains 5 columns, including “colonyID”, “date.tt”, “thermal.tolerance.trait”, “thermal.tolerance”, and “cross”. Each row of the dataset represents the response of an individual worker acorn ant.
colonyID – a unique identifier for each acorn ant colony; multiple individual workers were tested from the same colony.
date.tt – the date (month/day/year) that the thermal tolerance assessment was conducted.
thermal.tolerance.trait – a categorical variable describing whether the critical thermal minimum (ctmin) or critical thermal maximum (ctmax) was assessed on the individual worker ant. 
thermal.tolerance – a continuous numeric value describing either the ctmax or ctmin. Values are presented in units of degrees Celsius.
cross – a categorical variable describing the type of cross used to generate the F2 acorn ant workers. This variable has 4 levels, including “rur-rur” which describes a cross where both parents are from rural populations; “urb-urb” which describes a cross where both parents are from urban populations; “rur-urb” which describes a cross where the mother was from a rural population and the father from an urban population; and “urb-rur” which describes a cross where the mother was from an urban population and the father was from a rural population.
DOI: 10.5061/dryad.171q4.1
title: Data from: Ranking quantitative resistance to Septoria tritici blotch in elite wheat cultivars using automated image analysis
DOI: 10.5061/dryad.171q4.1/1.1
title: Data on quantitative resistance of wheat to Septoria tritici blotch

description: Data consists of 10 columns, first row shows column names. Each subsequent row corresponds to data from an individual leaf. Column 1 - leaf index, column 2 - leaf label, column 3 - leaf area in mm2, column 4 - area covered by necrotic tissue in mm2, column 5 - percentage of leaf area covered by lesions (PLACL), column 6 - number of pycnidia on the leaf, column 7 - mean area of pycnidia on the leaf in mm2, column 8 - number of pycnidia per cm2 leaf, column 9 - number of pycnidia per cm2 lesion, column 10 - pycnidia grey value.

Leaf label in column 2 uniquely identifies each leaf in the collection. It consists of three parts divided by underscore symbols "_". First part describes the time point of collection ("c1" - collection t1, 25 May 2016; "c3" - collection t2, 4 July, 2016). Second part is the sowing number that uniquely identifies the small wheat plot planted with a specific wheat cultivar. Third part is the index of a leaf within a specific plot. For example, leaf with the label "c1_sn133_7" comes from collection t1, sowing number 133, leaf index 7.
DOI: 10.5061/dryad.171q4.1/2.1
title: Correspondence between sowing numbers and cultivar names

description: Column 1 - cultivar name, column 2 - corresponding sowing number. Sowing numbers in the range 1-360 belong to Lot 4 (replicate 1), sowing numbers in the range 433-792 belong to Lot 3 (replicate 2).
DOI: 10.5061/dryad.171q4.2/1.2
title: Data on quantitative resistance of wheat to Septoria tritici blotch

description: Data consists of 10 columns, first row shows column names. Each subsequent row corresponds to data from an individual leaf. Column 1 - leaf index, column 2 - leaf label, column 3 - leaf area in mm2, column 4 - area covered by necrotic tissue in mm2, column 5 - percentage of leaf area covered by lesions (PLACL), column 6 - number of pycnidia on the leaf, column 7 - mean area of pycnidia on the leaf in mm2, column 8 - number of pycnidia per cm2 leaf, column 9 - number of pycnidia per cm2 lesion, column 10 - pycnidia grey value.

Leaf label in column 2 uniquely identifies each leaf in the collection. It consists of three parts divided by underscore symbols "_". First part describes the time point of collection ("c1" - collection t1, 25 May 2016; "c3" - collection t2, 4 July, 2016). Second part is the sowing number that uniquely identifies the small wheat plot planted with a specific wheat cultivar. Third part is the index of a leaf within a specific plot. For example, leaf with the label "c1_sn133_7" comes from collection t1, sowing number 133, leaf index 7.
DOI: 10.5061/dryad.171q4.2/2.2
title: Correspondence between sowing numbers and cultivar names

description: Column 1 - cultivar name, column 2 - corresponding sowing number. Sowing numbers in the range 1-360 belong to Lot 4 (replicate 1), sowing numbers in the range 433-792 belong to Lot 3 (replicate 2).
DOI: 10.5061/dryad.171q4.2/3.2
title: 2018_Karisto_et_al_Cultivar_rankings_AUDPC_data
DOI: 10.5061/dryad.2gm8348/1
title: Chillers total veg archive revised 2017

description: Plant species occurrence
DOI: 10.5061/dryad.2gm8348/2
title: Chillers veg archive 1979-2006-2007-2008
DOI: 10.5061/dryad.2rd9406/1
title: Species and Network Metrics

description: This is the overall data set with pollinator and flower abundance and species richness, Network metrics, Z scores of network metrics, species level specialization and normalized degree. The network metrics have been grouped into fire classes (Refuge, Unburned and Burned) and also sub-grouped into sites located at different elevations.
DOI: 10.5061/dryad.45bp07g/1
title: data_figure 1 & 3

description: Data for figure 1 and figure 3
DOI: 10.5061/dryad.45bp07g/2
title: data_figure 4

description: Data for figure 4
DOI: 10.5061/dryad.4r695ph/1
title: codes

description: Codes used for rainfall scenarios generation and hydrological connectivity estimation
DOI: 10.5061/dryad.52j8p1r/1
title: Figure 3 data

description: Bacteria settlement were measured by coating microtitre well plates with seaweed extract and without seaweed extract. The mesaurement was done by staining the settled bacteria cells with DNA stain and measuring fluroscence using a plate reader. Descriptors are mentioned in the file itself.
DOI: 10.5061/dryad.52j8p1r/2
title: Data underlying Figs 1, 2 and S1

description: Tip bleaching of the seaweed in presence of bacteria vs. absence of bacteria. Descriptors are mentioned in the file itself.
DOI: 10.5061/dryad.5649t65/1
title: experiment_infection_hosts_UPLOAD
DOI: 10.5061/dryad.5649t65/2
title: experiment_infection_totals_UPLOAD
DOI: 10.5061/dryad.5g4409r/1
title: High-altitude cognition data

description: Results from cognitive function test battery.
DOI: 10.5061/dryad.7dd64gs/6
title: protein_only_xenarthra_beast

description: maximum clade crediibility chronogram from analysis of xenarthran proteomic data
DOI: 10.5061/dryad.7dd64gs/7
title: combined_protein_mtDNA_xenarthra_bradypus_constraint_beast

description: maximum clade credibility chronogram from beast analysis of xenarthran proteomic and mitochondrial genome data.
DOI: 10.5061/dryad.821j0b0/1
title: IceAGE ecological modeling dataset from the North Atlantic Gateway

description: Dataset used for multiple regression modeling of meiobenthic deep-sea ostracod diversity from the IceAGE project.
DOI: 10.5061/dryad.821j0b0/2
title: Raw census data of Ostracoda of the North Atlantic Gateway

description: Inventory of meiobenthic deep-sea ostracods from the IceAGE project.
DOI: 10.5061/dryad.8k096p0/1
title: Data for Holmes et al. PLOS ONE. 2019

description: Data used to create all tables and figures in Holmes et al. PLOS ONE. 2019
DOI: 10.5061/dryad.dg70f0j/1
title: Tasmanian devil interactions

description: Rates of interactions of an adult population of Tasmanian devils collected over a 6 month period in 2015.
DOI: 10.5061/dryad.dk22g4h/24
title: phj89_gene_models.hc.gff3

description: Generic feature format file (gff3) of high-confidence genes in PHJ89.
DOI: 10.5061/dryad.dk22g4h/25
title: phj89_gene_models.hc.cdna.fa

description: Transcript sequences (cDNA) of high-confidence genes in PHJ89.
DOI: 10.5061/dryad.dk22g4h/26
title: phj89_gene_models.hc.cds.fa

description: Coding sequences (CDS) of high-confidence genes in PHJ89.
DOI: 10.5061/dryad.dk22g4h/27
title: phj89_gene_models.hc.pep.fa

description: Protein sequences of high-confidence genes in PHJ89.
DOI: 10.5061/dryad.dk22g4h/28
title: phj89_gene_models.hc.func_anno.txt

description: Functional annotation of high-confidence genes in PHJ89.
DOI: 10.5061/dryad.dk22g4h/29
title: phj89_gene_models.lc.gff3

description: Generic feature format file (gff3) of low-confidence genes in PHJ89.
DOI: 10.5061/dryad.dk22g4h/30
title: phj89_gene_models.lc.cdna.fa

description: Transcript sequences (cDNA) of low-confidence genes in PHJ89.
DOI: 10.5061/dryad.dk22g4h/31
title: phj89_gene_models.lc.cds.fa

description: Coding sequences (CDS) of low-confidence genes in PHJ89.
DOI: 10.5061/dryad.dk22g4h/32
title: phj89_gene_models.lc.pep.fa

description: Protein sequences of low-confidence genes in PHJ89.
DOI: 10.5061/dryad.fk334rr/1
title: Data set Trapanese et al_Where and What

description: This Excel file contains the raw data of each species (Tonkean macaques, long-tailed macaques, capuchin monkeys) for each task/season (CvS1, CvS2, CvQ).
DOI: 10.5061/dryad.h18c66b/1
title: 5e05.txt

description: PRS results using P&lt;5e05 threshold. These data are derived from the UK Biobank Resource as part of projects 8786 and 15825.
DOI: 10.5061/dryad.h18c66b/2
title: 5e08.txt

description: PRS results using P&lt;5e08 threshold. These data are derived from the UK Biobank Resource as part of projects 8786 and 15825.
DOI: 10.5061/dryad.j5r716b/3
title: Supplementary Materials

description: This file contains the scripts of simulations used in the study, and R functions for the construction of structured Markov models.
DOI: 10.5061/dryad.jb677gv/1
title: Leaf, litter and soil chemistry
DOI: 10.5061/dryad.jp55n53/1
title: Annual Primary Productivity data from NP fertilization experiment

description: The datafile contains 2 sheets, the first sheet contains the metadata and the second sheet contains the actual data. The data are from a full-factorial nitrogen (N) and phosphorus (P) addition experiment performed in the artic tundra in two contrasting vegetation types (heath and meadow) under two contrasting reindeer grazing regimes (lightly and heavily grazed). We collected data on annual primary productivity (in g per m2) of 4 different plant functional types (deciduous shrubs, evergreen shrubs, forbs, graminoids).
DOI: 10.5061/dryad.jp55n53/2
title: R script used for the statistical analyses

description: This document contains the R script used for the statistical analyses of the paper: 'Long-term heavy reindeer grazing promotes plant phosphorus limitation in arctic tundra' by Sitters et al.
DOI: 10.5061/dryad.kq27n36/1
title: vcf_unfiltered

description: each VCF file contains the unfiltered SNPs (output from GATK) for each backcross family including parents and grandparents.  For nomenclature please see supplemental figure S1 and for ID information see the VCF_IDs spreadsheet
DOI: 10.5061/dryad.kq27n36/2
title: VCF_ids

description: Sample IDs and information.
DOI: 10.5061/dryad.kq27n36/3
title: Gryllus QTL pedigree

description: IDs of backcrossed individuals and their parentage
DOI: 10.5061/dryad.n0bf69r/1
title: pressure data summary file

description: this is a summary file which include all the experimental data recorded in our experiments.
DOI: 10.5061/dryad.n88kb1m/1
title: Code to analyze population differences in CSP
DOI: 10.5061/dryad.n88kb1m/2
title: Code to analyze premating data
DOI: 10.5061/dryad.n88kb1m/3
title: Code to analyze genotypic effects on CSP
DOI: 10.5061/dryad.n88kb1m/4
title: Correlation between mean CSP and ISC

description: averages taken for each genotype across all replicates
DOI: 10.5061/dryad.nd637r5/1
title: Mortality data

description: The file contains mortality data of fish species, populations and different rearing treatments in experiment 1, and of fish populations and different rearing/exposure environments in experiment 2.
DOI: 10.5061/dryad.rc7bh42/1
title: Barton_Wong_Island_Competition

description: Effect size data for neighbor effect sizes from islands.
DOI: 10.5061/dryad.sk67tn8/1
title: Reyetal_data

description: Table 1: Number of territories and disturbance index for all bird species, collected in the field during our study. Table 2: Species Richness and Abundance within the study area.
DOI: 10.5061/dryad.t46kr73/1
title: one6two3
DOI: 10.5061/dryad.t46kr73/10
title: one7two4three1
DOI: 10.5061/dryad.t46kr73/11
title: one7two3three1
DOI: 10.5061/dryad.t46kr73/3
title: one6two3three1
DOI: 10.5061/dryad.t46kr73/4
title: one6two4
DOI: 10.5061/dryad.t46kr73/5
title: one6two4three1
DOI: 10.5061/dryad.t46kr73/6
title: one6two5
DOI: 10.5061/dryad.t46kr73/7
title: one6two5three1
DOI: 10.5061/dryad.t46kr73/8
title: one7two3
DOI: 10.5061/dryad.t46kr73/9
title: one7two4
DOI: 10.17632/vkhssxk2s5.1
title: Data for: Hydrothermal synthesis and photocatalytic properties of CuGaO2/ZnO hexagonal platelet composite

description: This includes information related with the article.
DOI: 10.17632/xpjfgc2knm.1
title: Data for: An intelligent hybridization of ARIMA with machine learning models for time series forecasting

description: Three classical time series widely used in the literature.
DOI: 10.5061/dryad.0r75421/2
title: Field_versus_F2_CTmax

description: This dataset contains 4 columns, including “colonyID”, “ctmax”, “generation”, and “population”. Each row of the dataset represents the response of an individual worker acorn ant.
colonyID – a unique identifier for each acorn ant colony; multiple individual workers were tested from the same colony.
ctmax – a continuous numeric variable describing the value for the critical thermal maximum in degrees Celsius.
generation – a categorical variable describing whether the data come from the field-caught generation or the F2 (lab-born) generation.
population – a categorical variable describing whether the ants originated from a rural or an urban site.
DOI: 10.5061/dryad.0r75421/3
title: Field_versus_F2_CTmin

description: This dataset contains 4 columns, including “colonyID”, “ctmax”, “generation”, and “population”. Each row of the dataset represents the response of an individual worker acorn ant.
colonyID – a unique identifier for each acorn ant colony; multiple individual workers were tested from the same colony.
ctmin – a continuous numeric variable describing the value for the critical thermal minimum in degrees Celsius.
generation – a categorical variable describing whether the data come from the field-caught generation or the F2 (lab-born) generation.
population – a categorical variable describing whether the ants originated from a rural or an urban site.