cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/z4swww2z23
title: Comparison of Gabapentin and Quetiapine in treating delirium

description: This data set shows retrospective comparison of gabapentin and quetiapine in treating delirium, with regard to efficacy and adverse effects. The data suggests that GBP is likely to ameliorate delirium more effectively than, or equally to quetiapine. Gabapentin could be an effective and safe alternative to antipsychotics for the treatment of delirium in patents who are vulnerable to antipsychotics. On the other hand, its dosage should be adjusted to avoid somnolence, and should be used carefully for patients with severe kidney disease or myoclonus.
DOI: 10.25422/azu.data.28620761.v1
title: Data for <i>Identifying Landslides in Atla Regio on Venus</i>

description: We performed a systematic search for landslides in the Alta Regio region of Venus, located from (16°S, 179°W) to (21°N, 147°W). Using data primarily from Magellan Cycle 1 radar imagery, we identified 29 landslides in this region. There were 19 previously identified across the entire surface (Malin, 1992). There were three different categories and two sub-categories used for morphological classification: rock/debris avalanches, with their subcategory of debris flows; rock slumps/slides, and rock slide avalanches, with their subcategory being small rock slides. These landslides are commonly a result of slope failure of the walls of chasmata in Atla Regio. We also compared the types of landslides with altitude to determine whether some types of landslides are more common at different atmospheric pressures, however, no clear correlation could be identified. The prevalence of landslides in this area, including many others that could not be conclusively confirmed at Magellan resolutions, suggests that there are many more landslides on Venus than were previously known.<br><br><br><br><i>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i>
DOI: 10.6084/m9.figshare.12815732.v1
title: Energy per spectral niche

description: Fraction of the total scalar irradiance that is contained within one of the 7 niches (violet, violet x blue, blue, blue x green, green, orange and red) at the euphotic depth. <br>Dataset accompanies <b>Fig. 5. b</b> and <b>Extended Data Fig. 5.</b>
DOI: 10.6084/m9.figshare.20500284.v1
title: Geocomplexity explains spatial errors

description: Data sets for IJGIS submission. Include geocomplexity and model codes, raw datasets and key intermediate results.
DOI: 10.6084/m9.figshare.7673033.v1
title: Supplementary Material for: Diagnostic Accuracy of Breast Medical Tactile Examiners (MTEs): A Prospective Pilot Study

description: <b><i>Background:</i></b> The usefulness of clinical breast examination (CBE) in general and in breast cancer screening programs has been a matter of debate. This study investigated whether adding vision-impaired medical tactile examiners (MTEs) improves the predictiveness of CBE for suspicious lesions and analyzed the feasibility and acceptability of this approach. <b><i>Methods:</i></b> The prospective study included 104 patients. Physicians and MTEs performed CBEs, and mammography and ultrasound results were used as the gold standard. Sensitivity and specificity were calculated and logistic regression models were used to compare the predictive value of CBE by physicians alone, MTEs alone, and physicians and MTEs combined. <b><i>Results:</i></b> For CBEs by physicians alone, MTEs alone, and both combined, sensitivity was 71, 82, and 89% and specificity was 55, 45, and 35%, respectively. Using adjusted logistic regression models, the validated areas under the curve were 0.685, 0.692, and 0.710 (median bootstrapped p value (DeLong) = 0.381). <b><i>Conclusion:</i></b> The predictive value for a suspicious breast lesion in CBEs performed by MTEs in patients without prior surgery was similar to that of physician-conducted CBEs. Including MTEs in the CBE procedure in breast units thus appears feasible and could be a way of utilizing their skills.
DOI: 10.6084/m9.figshare.7862153.v1
title: Partial Mechanical Restraint video files of juvenile Japanese quail (first half)

description: Partial Mechanical Restraint was performed on juvenile Japanese quail (40 days of age). Test consisted in restricting the movement of the animal between two walls of a melamine box of 20 x 10 cm (height per width, respectively) with the characteristic that the front wall was made of glass, and the back wall was adjustable to induce immobility in such a way that the animal cannot open the wings, but can move the head and legs. The experimenters retreated out of the birds' sight, and the test was during 5 minutes recorded with a video camera place in front of the box. All the birds were tested in 31 batches of 4 animals each, where the birds had no visual or physical contact between each other. File name includes the ID number of the four birds tested.
DOI: 10.6084/m9.figshare.28200197.v1
title: <b>respiratory infections</b>

description: <b>children with acute respiratory infections in Xiamen, Southeast China</b>
DOI: 10.6084/m9.figshare.27595785.v3
title: <b>Imputation-Based Whole Genome Sequencing Data in Duroc, Landrace, and Yorkshire Pigs</b>

description: Imputation-Based Whole Genome Sequencing Data in Duroc, Landrace, and Yorkshire Pigs
DOI: 10.6084/m9.figshare.11898405.v2
title: Metadata record for: Provincial and gridded population projection for China under shared socioeconomic pathways from 2010 to 2100

description: This dataset contains key characteristics about the data described in the Data Descriptor Provincial and gridded population projection for China under shared socioeconomic pathways from 2010 to 2100. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.19538977.v1
title: Termos sem tratamento - GT-7

description: Frequência de termos sem tratamento.
DOI: 10.17632/ktfwtk6k3f
title: Tc1 transposase sequence alignment

description: Sequence alignment of transposases from 45 members of the Tc1 family, including 22 inactive TEs and 23 active TEs.
DOI: 10.6084/m9.figshare.18411410.v1
title: CYBERBULLYING

description: 777 Chinese adolescents (56.8% male, aged between 11 and 16 years old) completed questionnaires assessing personal information, deviant peers, moral disengagement and cyberbullying.
DOI: 10.6084/m9.figshare.7199477.v1
title: Taxon table and metadata file for Channel Islands eDNA samples (mitochondrial 12S and CO1 metabarcodes sequenced)

description: Thirty 1-Liter water samples were collected inside and outside permanent monitoring areas in the Channel Islands National Park. DNA was extracted using the Qiagen DNeasy kit, modified according to Spens et al. 2017. The mitochondrial 12S and CO1 gene regions were PCR amplified (using primers from Miya et al. 2015 and Leray et al. 2013, respectively). The samples were sequenced on an Illumina MiSeq and processed using the Anacapa toolkit (https://github.com/limey-bean/Anacapa).<br>channel-islands-taxon-table.txt is formatted as an Anacapa output file; the same data is available in BIOM format in channel-islands-taxon-table.biom. Sample metadata are available in channel-islands-metadata.txt. https://gauravsk.shinyapps.io/ranacapa
DOI: 10.6084/m9.figshare.12595067.v2
title: Source Data

description: Excel files allowing for the reproduction of figures of the paper
DOI: 10.6084/m9.figshare.4012635.v2
title: Remotely sensed high resolution irrigated area mapping in India for 2000 to 2015

description: Irrigated area maps for the period of 2000-2015 developed using 250m MODIS NDVI.<br>
DOI: 10.6084/m9.figshare.7928564.v1
title: gVCF_HG03861

description: 1000 Genomes gVCF mapped to hs37d5 for HG03861. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.11653200.v3
title: Simulated Satellite Imagery

description: This data set contains the original training data and the processed result of the simulated satellite images. A third-party python library named "PyTorch CycleGAN" was used to simulate satellite images.
DOI: 10.6084/m9.figshare.13072103.v1
title: Extended data workbook 2 Cluster analysis of gene correlates.xlsx

description: Cluster analysis of gene correlates of LRRK2, HLA-DQB1 and HCRT in the Hypothalamus, Dorsal Thalamus, Pons and Nucleus Subcoeruleus
DOI: 10.6084/m9.figshare.13173683.v1
title: Young Hoon Soong & Chung, E-S. Bias-corrected Data of CMIP5 and CMIP6 Figshare,

description: Bias-corrected Data of CMIP5 and CMIP6
DOI: 10.6084/m9.figshare.28114016.v1
title: Inland aquatic food systems under climate change literature review

description: Literature database on climate change in inland aquatic food systems.Search strings: (“Fisheries” AND “Climate change”) AND (“Inland” OR “Freshwater” OR “River*” OR “Lake”)(“Aquaculture” AND “Climate change”) AND (“Inland” OR “Freshwater” OR “River*” OR “Lake”)
DOI: 10.6084/m9.figshare.28566074.v3
title: <b>Megacodon</b> <b>stylophorus</b> genome assembly <b>stylophorus</b> genome assembly

description: <b>Megacodon</b> <b>stylophorus</b> genome assembly<b>Chromosome level genome assembly of </b><b><i>Megacodon stylophorus</i></b><b><i> </i></b><b>identified two rounds of whole genome duplications in tribe Gentianeae.</b>
DOI: 10.17632/gbr7tprkyd
title: Orbital - millennial environment and hydrology changes of the central Okhotsk Sea over the last 136 kyr inferred by micropaleontological (radiolarian and benthic foraminifera), geochemical and lithological proxies and mechanisms responsible for them

description: Supplementary data for MS submitted to Quaternary Science Review
DOI: 10.17632/nvpgs2vjmr
title: Data for: Phase equilibria and thermodynamic evaluation of the Fe-Ti-V-O system in air

description: 1.) We are including additional SEM-EDS data from the study of "Phase equilibria and thermodynamic evaluation of Fe-Ti-V-O system in air". However, SEM-EDS data did not compare well to reported EPMA data in the manuscript, especially phase data of the Fe-Ti-V-O slag. We believe that the overlapping of V and Ti X-ray emission peaks might have contributed why SEM-EDS data did not compare well to EPMA data. 2.) The data from EPMA were normalized and included in the thermodynamic assessment of Fe-Ti-V-O system in air.
DOI: 10.17632/whshg8fnfr
title: Dataset: Light soaking of silicon heterojunction solar cells by applying high-intensity line-shaped laser scans

description: Dataset for the Publication: Light soaking of silicon heterojunction solar cells by applying high-intensity line-shaped laser scans
DOI: 10.6084/m9.figshare.12401540.v1
title: 1-D closed chain configuration

description: 16 violin players in a one dimensional chain configuration when the coupling strength is lowered linearly in time.*.aiff = raw sounds files of the experiment (there are 4 different measurements)*.mat = analyzed data of one of the measurements showing the phase of each players*.fig = the figure in the paper
DOI: 10.6084/m9.figshare.21221036.v2
title: Evaluating the Accuracy of a Novel Artificial Intelligence Based Symptom Checker: A Clinical Vignettes Study: Vignette Suite and Screenshots

description: Evaluating the Accuracy of a Novel Artificial Intelligence Based Symptom Checker: A Clinical Vignettes Study: Vignette Suite and Screenshots
DOI: 10.6084/m9.figshare.8216582.v2
title: The emergence of critical stocks in market crash

description: Data used in the paper "The emergence of critical stocks in market crash".<br>1. The '2015bipartite.graphml' and '2015-1_fund_stock.graphml' contains the stock networks established by the mutual funds holding data on Jun 30, 2015. While the first file has the mutual funds holding values grouped by the labels of mutual fund companies, the second one uses mutual funds holding values directly. The original data of mutual funds holding are provided by Wind Information, which is not publicly available due to Wind’s license requirement. 2. The ‘stock_style.csv’ describes which kind of investment style a stock belongs to, which is also downloaded from Wind Information. 3. The series of files named as ‘first to low *.csv’ includes the stocks which reach their limit down prices. The timing of stocks reaching limit down prices are calculated from the intraday price data provided by Thomson Reuters’ Tick History. The information of whether a stock reached its limit down price is provides by Wind Information. The original price trends data is not publicly available due to the company’s license requirement. <br>
DOI: 10.6084/m9.figshare.16987954.v1
title: 907 SNP in structure format

description: The structure format include 907 SNP with population labels, the labels are corresponded to the supplementary with Table S1 in supplementary.
DOI: 10.6084/m9.figshare.19095443.v3
title: Supplementary Material for: Anti-<b><i>Ascaris</i></b> IgE as a Risk Factor for Asthma Symptoms among 5-Year-Old Children in Rural Bangladesh with Even Decreased <b><i>Ascaris</i></b> Infection Prevalence

description: <b><i>Background:</i></b> Epidemiological studies have indicated that anti-<i>Ascaris</i> IgE enhances asthma and allergies under specific conditions although the association between them is still controversial. The association of anti-<i>Ascaris</i> IgE with increased asthma symptoms among children from a general population with a mild to moderate <i>Ascaris</i> infection prevalence was investigated. <b><i>Methods:</i></b> A total of 126 children aged 5 years with wheezing during the previous year and 110 children who did not have wheezing were selected randomly from the rural service area of the International Centre for Diarrhoeal Disease Research, Bangladesh. Serum levels of total, anti-<i>Ascaris</i>, anti-<i>Dermatophagoides pteronyssinus</i>, and anti-cockroach IgEs were tested, and their risks for wheezing were analyzed. The wheezing children were then classified by hierarchical cluster analysis to investigate the contribution of anti-<i>Ascaris</i> IgE to wheezing. <b><i>Results:</i></b> The anti-<i>Ascaris</i> IgE levels in wheezing and never-wheezing children were 1.07 and 0.65 U<sub>A</sub>/mL, and it contributed to 11% of wheezing in children. Anti-<i>Ascaris</i> IgE was significantly associated with wheezing (odds ratio [OR] per log<sub>e</sub> increment: 1.37 [95% CI: 1.01–1.87], <i>p</i> = 0.046). The ORs, which were adjusted for sex, parental asthma, pneumonia history, helminth infections, <i>Haemophilus influenzae</i> type B combination vaccination, antibiotic use during infancy, and total and specific IgE levels, increased even when only children with more specific symptoms of asthma were included in the analysis. Namely, the ORs for wheezing with sleep disturbance, four or more attacks, and wheezing with speech difficulties during the previous 1 year were OR = 1.44/log<sub>e</sub> increment [95% CI: 1.01–2.07], OR = 1.90/log<sub>e</sub> increment [95% CI: 1.11–3.25], and OR = 1.78/log<sub>e</sub> increment [95% CI: 1.01–3.14], respectively. <b><i>Conclusions:</i></b> The anti-<i>Ascaris</i> IgE levels in wheezing and never-wheezing children in the current study significantly decreased concurrently with <i>Ascaris</i> infection prevalence compared with their corresponding values in 2001. The contribution of anti-<i>Ascaris</i> IgE to wheezing also dropped from 26% in 2001 to 11% in the current study. Despite significant decreases in the levels and the seroprevalence and its contribution to wheezing, anti-<i>Ascaris</i> IgE remained significantly associated with increased risk of wheezing. Anti-<i>Ascaris</i> IgE significantly increased the risk of wheezing in a general population with a mild to moderate <i>Ascaris</i> infection prevalence, suggesting robustness as a risk factor and a possible dose-response relationship.
DOI: 10.6084/m9.figshare.26129935.v1
title: <b>Development of a Predictive Nomogram for Testicular Sperm Extraction Outcomes in Non-Obstructive Azoospermia Patients Using Testicular Volume, Follicle-Stimulating Hormone, and Testosterone Levels as Key Parameters</b>

description: Objective: To investigate the establishment of a predictive model for the outcomes of testicular sperm extraction (TESE) surgery in patients with non-obstructive azoospermia (NOA). Methods: We conducted a retrospective analysis of patients who visited the andrology outpatient clinic at the First Affiliated Hospital of Soochow University from January 2010 to January 2024. A total of 425 patients’ clinical data were included in the study. All patients underwent TESE surgery, with 216 cases in the sperm-positive group and 209 cases in the sperm-negative group. Differences in testicular volume, reproductive hormone levels, and clinically relevant parameters between the two groups were compared. Multivariate logistic regression analyze was performed to identify independent risk factors, which were then used to establish a predictive nomogram model. The model’s goodness-of-fit was evaluated using a calibration curve. The diagnostic effectiveness of the model was assessed through the receiver operating characteristic (ROC) curve, while the net benefit was evaluated using a decision curve analysis (DCA) plot. Results: Univariate analysis revealed that serum follicle-stimulating hormone (FSH), body mass index (BMI), seminal plasma fructose, elastase levels, and testicular microlithiasis differed significantly between the two groups (p&lt;0.05). Logistic multivariate regression analysis of these factors found FSH, testicular volume, and testosterone (T) to be independent risk factors affecting TESE outcomes. Specifically, FSH was negatively correlated (OR=0.905, 95% CI: 0.876-0.935, P&lt;0.001), while testicular volume (OR=1.453, 95% CI: 1.328-1.591, P&lt;0.001) and T (OR=1.326, 95% CI: 1.098-1.601, P=0.003) were positively correlated. A predictive nomogram was established using parameters of testicular volume, FSH, and T. The calibration curve demonstrated good fit, and the area under the ROC curve was 0.879, indicating high accuracy of the model. The DCA plot showed that the model has substantial clinical benefit. Conclusion: In NOA patients, low testicular volume, low T levels, and high FSH levels are independent risk factors for unsuccessful TESE sperm retrieval. The predictive model nomogram based on testicular volume, serum FSH, and T levels provides excellent predictive power for positive outcomes in testicular sperm extraction.
DOI: 10.6084/m9.figshare.5128120.v1
title: Supplementary Material for: Cognitive Impairment and Its Structural Correlates in the Parkinsonian Subtype of Multiple System Atrophy

description: <b><i>Background/Aims:</i></b> Previous studies indicate that patients with the parkinsonian subtype of multiple system atrophy (MSA-P) experience cognitive impairment. This study aimed to identify the existence of cognitive impairments and the different topographic patterns of morphological changes in MSA-P by means of imaging analysis, and also whether these morphological changes could be associated with cognitive dysfunctions in MSA-P. <b><i>Methods:</i></b> We recruited 15 nondemented probable MSA-P patients and 32 normal controls (NC) for neuropsychological testing and MRI. We analyzed morphological changes using cortical thickness analysis, voxel-based morphometry (VBM) and cerebellar volumetry. Multiple linear regression analysis was performed to evaluate the correlation of each cognitive score with the mean thickness of significant cortical-thinning clusters, mean gray-matter density of VBM clusters and cerebellar volume. <b><i>Results:</i></b> The scores on the Digit Span Test, the Seoul Verbal Learning Test (immediate and delayed), the phonemic Controlled Oral Word Association Test and the Stroop color test were significantly lower in the MSA-P group than in the NC group. We found two clusters exhibiting significant cortical thinning in the right paracentral lobule and parahippocampal gyrus. VBM analysis revealed significant gray-matter atrophy in the MSA-P group in the bilateral basal ganglia, cerebellum and temporal and frontal cortical areas. Multiple linear regression analysis demonstrated that cognitive dysfunction correlated significantly with thinning in the neocortex, cerebellum and striatum. <b><i>Conclusions:</i></b> Our data demonstrate that cortical and cerebellar atrophy and striatal degeneration are associated with cognitive impairment in patients with MSA-P.
DOI: 10.6084/m9.figshare.7756526.v1
title: Plotting ancestral states from MCMCglmm example

description: R code that takes tip and internal node model estimates from MCMCglmm phylogenetic mixed model, and associates them with the tree, so it you can output a tree file and read into figtree (https://github.com/rambaut/figtree/releases) to make pretty colour gradients of states across the tree e.g. https://doi.org/10.1371/journal.ppat.1007185.g002<br>Make sure to add the Nexus block to the final .tre file:<br>"#NEXUS<br>Begin trees;”<br><br>then your tree<br><br>“End;”<br><br>Data from Roberts et al. 2018 https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1007185
DOI: 10.6084/m9.figshare.11336657.v1
title: Source Data for GWAS in Fig. 1.mht

description: Source Data for GWAS in Fig. 1
DOI: 10.6084/m9.figshare.24969993.v3
title: PTM Splicing Analysis: Supplementary Data

description: This contains all raw data and analysis for the manuscript titled "A systematic analysis of the effects of splicing on the diversity of post-translational modifications in protein isoforms using PTM-POSE<b>"</b>. Folders contain data on PTMs projected onto alternative isoforms using our computational pipeline, as well as data generated from the analysis of this information. All data necessary to replicate the analysis and figures in this work can be found here, unless it can be downloaded elsewhere from an external database (TCGA, PhosphoSitePlus, etc.).
DOI: 10.17632/dykdp4ns25
title: Final version of numerical data for: Coupled effects of iron (hydr)oxides and clay minerals on the heterogeneous oxidation of aqueous Mn(II) and crystallization of manganese (hydr)oxides

description: Final version of raw numerical data for the peer-reviewed manuscript entitled "Coupled effects of iron (hydr)oxides and clay minerals on the heterogeneous oxidation of aqueous Mn(II) and crystallization of manganese (hydr)oxides".