cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7482333
title: Analysis of two focus groups about data visualization

description: This repository contains two datasets concerning the analysis of two focus groups about data visualization.



frequency_matrix_v2.xlsx: this resource contains a frequency analysis matrix of the focus groups. The categories are identified on the horizontal axis, using different colours according to the hierarchy of the categorical system (meta-category, categories, and subcategories) to facilitate the subsequent axial coding of the content.

content_matrix_v2.xlsx: this resource contains the analysis of the content of the two focus groups. Following data reduction, the ideas or units of analysis about each category were grouped and coded. In this way, the content analysis was completed with the coding of the units of analysis about the respective categories using the axial coding procedure.

Transcription_experts_ES.pdf: this document is the original transcription of the focus group discussion with experts in Spanish.

Transcription_experts_EN.pdf: this document is a transcription of the focus group discussion with experts, automatically translated into English by DeepL.

Transcription_phd_ES.pdf: this document is the original transcription of the focus group discussion with Ph.D. students in Spanish.

Transcription_phd_EN.pdf: this document is a transcription of the focus group discussion with Ph.D. students, automatically translated into English by DeepL.
DOI: 10.5281/zenodo.10178131
title: In-situ analysis and quantitative dataset of the impact assessment of perceived level of exposure to pollution and health condition
DOI: 10.5281/zenodo.10245103
title: In-situ analysis and quantitative dataset of the impact assessment of perceived level of exposure to pollution and health condition
DOI: 10.5281/zenodo.10178130
title: In-situ analysis and quantitative dataset of the impact assessment of perceived level of exposure to pollution and health condition
DOI: 10.5281/zenodo.10257039
title: In-situ analysis and quantitative dataset of the impact assessment of perceived level of exposure to pollution and health condition
DOI: 10.5281/zenodo.10556304
title: In-situ analysis and quantitative dataset of the impact assessment of perceived level of exposure to pollution and health condition
DOI: 10.5281/zenodo.10455321
title: Dataset for "The relevance of structural variability in the time-domain for computational reflection anisotropy spectroscopy at solid-liquid interfaces"

description: Molecular dynamics (MD) trajectories from CP2k used in the article "The relevance of structural variability in the time-domain for computational reflection anisotropy spectroscopy at solid-liquid interfaces", published in Journal of Physics: Condensed Matter.
DOI: 10.5281/zenodo.10455322
title: Dataset for "The relevance of structural variability in the time-domain for computational reflection anisotropy spectroscopy at solid-liquid interfaces"

description: Molecular dynamics (MD) trajectories from CP2k used in the article "The relevance of structural variability in the time-domain for computational reflection anisotropy spectroscopy at solid-liquid interfaces", published in Journal of Physics: Condensed Matter.
DOI: 10.5281/zenodo.4729941
title: Namib Turbulence Experiment Data Repository - BAMS 2021

description: This dataset accompanies Hilland et al. (2022) and contains the data necessary for the analysis and plots therein. Data were collected during the Namib Turbulence Experiment (NamTEX) in March 2020. This repository contains a micrometeorological overview of the entire campaign, distributed temperature sensor and surface thermography measurements for specific time periods as well as derived thermal image velocimetry and spatio-temporally decomposed temperature sets. Specific information can be found in the README.pdf file or the accompanying article.

Analysis and processing of the full NamTEX dataset is ongoing and in time all data will be made publicly available. Please visit the project homepage for more information and future updates: https://www.meteo.uni-freiburg.de/en/research/namib-turbulence-experiment

 

Hilland, R. V. J., C. Bernhofer, M. Bohmann, A. Christen, M. Katurji, G. Maggs-Kölling, M. Krauß, J. A. Larsen, E. Marais, A. Pitacco, B. Schumacher, R. Spirig, N. Vendrame, and R. Vogt, 2022: The Namib Turbulence Experiment: Investigating surface-atmosphere heat transfer in three dimensions. Bulletin of the American Meteorological Society 103(3), E741-E760. https://doi.org/10.1175/BAMS-D-20-0269.1
DOI: 10.5281/zenodo.4729942
title: Namib Turbulence Experiment Data Repository - BAMS 2021

description: This dataset accompanies Hilland et al. (2022) and contains the data necessary for the analysis and plots therein. Data were collected during the Namib Turbulence Experiment (NamTEX) in March 2020. This repository contains a micrometeorological overview of the entire campaign, distributed temperature sensor and surface thermography measurements for specific time periods as well as derived thermal image velocimetry and spatio-temporally decomposed temperature sets. Specific information can be found in the README.pdf file or the accompanying article.

Analysis and processing of the full NamTEX dataset is ongoing and in time all data will be made publicly available. Please visit the project homepage for more information and future updates: https://www.meteo.uni-freiburg.de/en/research/namib-turbulence-experiment

 

Hilland, R. V. J., C. Bernhofer, M. Bohmann, A. Christen, M. Katurji, G. Maggs-Kölling, M. Krauß, J. A. Larsen, E. Marais, A. Pitacco, B. Schumacher, R. Spirig, N. Vendrame, and R. Vogt, 2022: The Namib Turbulence Experiment: Investigating surface-atmosphere heat transfer in three dimensions. Bulletin of the American Meteorological Society 103(3), E741-E760. https://doi.org/10.1175/BAMS-D-20-0269.1
DOI: 10.34740/kaggle/dsv/7464148
title: RTRS Brazil Database 2023
DOI: 10.6084/m9.figshare.25047638
title: Supplementary Material for: Angiopoietin as A Novel Prognostic Marker in Kidney Disease

description: Renal injury is among the leading causes of morbidity and mortality, however, there are no reliable indicators for determining the likelihood of developing CKD, CKD progression or AKI events. Vascular growth factors called angiopoietins have a role in endothelial function, vascular remodeling, tissue stabilization and inflammation, and have been implicated as prognostic and predictive markers in AKI. Although the exact mechanism of the relationship between kidney injury and angiopoietins is unknown, this review demonstrates that AKI patients have higher angiopoietin-2 levels and that higher angiopoietin-1 to angiopoietin-2 ratio may potentially be linked with a reduced risk of the chronic kidney disease progression. This review therefore emphasizes the importance of angiopoietin-2 and proposes that it could be an important predictor of AKI in clinical settings. There is a need for further large scale randomized clinical trials in order to have a better understanding of the significance of angiopoietin-2 and for the determination of its potential clinical implications.
DOI: 10.6084/m9.figshare.25047638.v1
title: Supplementary Material for: Angiopoietin as A Novel Prognostic Marker in Kidney Disease

description: Renal injury is among the leading causes of morbidity and mortality, however, there are no reliable indicators for determining the likelihood of developing CKD, CKD progression or AKI events. Vascular growth factors called angiopoietins have a role in endothelial function, vascular remodeling, tissue stabilization and inflammation, and have been implicated as prognostic and predictive markers in AKI. Although the exact mechanism of the relationship between kidney injury and angiopoietins is unknown, this review demonstrates that AKI patients have higher angiopoietin-2 levels and that higher angiopoietin-1 to angiopoietin-2 ratio may potentially be linked with a reduced risk of the chronic kidney disease progression. This review therefore emphasizes the importance of angiopoietin-2 and proposes that it could be an important predictor of AKI in clinical settings. There is a need for further large scale randomized clinical trials in order to have a better understanding of the significance of angiopoietin-2 and for the determination of its potential clinical implications.
DOI: 10.6084/m9.figshare.25047620
title: Orderliness results of subsystems in 31 provinces and cities.xlsx

description: Orderliness results of subsystems in chinese 31 provinces and cities
DOI: 10.6084/m9.figshare.25047620.v1
title: Orderliness results of subsystems in 31 provinces and cities.xlsx

description: Orderliness results of subsystems in chinese 31 provinces and cities
DOI: 10.25405/data.ncl.23576256
title: Generation of long-chain fatty acids by hydrogen-driven bicarbonate reduction in a low-temperature alkaline hydrothermal vent simulator

description: Raw analytical Data from the publication Generation of long-chain fatty acids by hydrogen-driven bicarbonate reduction in a low-temperature alkaline hydrothermal vent simulator<strong> </strong>by Graham Purvis, Lidija Siller, Archie Crosskey, Jupiter Vincent, Corrine Wills, Jake Sheriff, Cijo Xavier and Jon Telling. Data from the following instruments: X-ray photoelectron spectroscopy, FTIR, pyrolysis-gas chromatography/mass spectrometry, 1HNMR, Thermogravimetric analysis, total organic combustion and ion chromatography
DOI: 10.25405/data.ncl.23576256.v2
title: Generation of long-chain fatty acids by hydrogen-driven bicarbonate reduction in a low-temperature alkaline hydrothermal vent simulator

description: Raw analytical Data from the publication Generation of long-chain fatty acids by hydrogen-driven bicarbonate reduction in a low-temperature alkaline hydrothermal vent simulator<strong> </strong>by Graham Purvis, Lidija Siller, Archie Crosskey, Jupiter Vincent, Corrine Wills, Jake Sheriff, Cijo Xavier and Jon Telling. Data from the following instruments: X-ray photoelectron spectroscopy, FTIR, pyrolysis-gas chromatography/mass spectrometry, 1HNMR, Thermogravimetric analysis, total organic combustion and ion chromatography
DOI: 10.25405/data.ncl.23576256.v1
title: Generation of long-chain fatty acids by hydrogen-driven bicarbonate reduction in a low-temperature alkaline hydrothermal vent simulator

description: Raw analytical Data from the publication Generation of long-chain fatty acids by hydrogen-driven bicarbonate reduction in a low-temperature alkaline hydrothermal vent simulator<strong> </strong>by Graham Purvis, Lidija Siller, Archie Crosskey, Jupiter Vincent, Corrine Wills, Jake Sheriff, Cijo Xavier and Jon Telling. Data from the following instruments: X-ray photoelectron spectroscopy, FTIR, pyrolysis-gas chromatography/mass spectrometry, 1HNMR, Thermogravimetric analysis, total organic combustion and ion chromatography
DOI: 10.5281/zenodo.10498846
title: Datasets for Computing k-Bisimulations for Large Graphs

description: Summarizing graphs w.r.t. structural features is important to reduce the graph's size and make tasks like indexing, querying, and visualization feasible. These datasets help to compare and analyze algorithms for graph summarization.
DOI: 10.5281/zenodo.10498845
title: Datasets for Computing k-Bisimulations for Large Graphs

description: Summarizing graphs w.r.t. structural features is important to reduce the graph's size and make tasks like indexing, querying, and visualization feasible. These datasets help to compare and analyze algorithms for graph summarization.
DOI: 10.6084/m9.figshare.25047650
title: Synergy degree of composite systems in 31 provinces and cities.xlsx

description: Synergy degree of composite systems in Chinese 31 provinces and cities
DOI: 10.6084/m9.figshare.25047650.v1
title: Synergy degree of composite systems in 31 provinces and cities.xlsx

description: Synergy degree of composite systems in Chinese 31 provinces and cities
DOI: 10.5281/zenodo.10556440
title: Replication Kit for paper "Tools for Monitoring Software Quality in Information Systems Development and Maintenance: Five Key Challenges and a Design Proposal"

description: What is this?

This ZIP file contains the replication kit for the paper _"Tools for Monitoring Software Quality in Information Systems Development and Maintenance: Five Key Challenges and a Design Proposal"_.

The replication kit consists of three components. After unzipping, these are:

* The document [`tech_report.pdf`](./tech_report.pdf) contains a more thorough description of the six software quality assessment tools (SWQAT) that are used in the comparative experiment.  Furthermore, it contains detailed descriptions of how each SWQAT assesses software quality and in which way assessment results are aggregated and presented.* The directory [`data_collection_protocol`](./data_collection_protocol) contains all the collected data from running the six SWQATs.  Per SWQAT and per experiment system, screenshots and other reports that could be exported from SWQATs are contained.* The directory [`experiment_vms`](./experiment_vms) contains scripts and code that instantiates local virtual machines for those cases in which SWQATs do not run completely in the cloud, see [`README.md`](./experiment_vms/README.md).
DOI: 10.5281/zenodo.10556441
title: Replication Kit for paper "Tools for Monitoring Software Quality in Information Systems Development and Maintenance: Five Key Challenges and a Design Proposal"

description: What is this?

This ZIP file contains the replication kit for the paper _"Tools for Monitoring Software Quality in Information Systems Development and Maintenance: Five Key Challenges and a Design Proposal"_.

The replication kit consists of three components. After unzipping, these are:

* The document [`tech_report.pdf`](./tech_report.pdf) contains a more thorough description of the six software quality assessment tools (SWQAT) that are used in the comparative experiment.  Furthermore, it contains detailed descriptions of how each SWQAT assesses software quality and in which way assessment results are aggregated and presented.* The directory [`data_collection_protocol`](./data_collection_protocol) contains all the collected data from running the six SWQATs.  Per SWQAT and per experiment system, screenshots and other reports that could be exported from SWQATs are contained.* The directory [`experiment_vms`](./experiment_vms) contains scripts and code that instantiates local virtual machines for those cases in which SWQATs do not run completely in the cloud, see [`README.md`](./experiment_vms/README.md).
DOI: 10.6084/m9.figshare.22231678
title: Regulation role of Alternative Splicing in physiologies characteriscs of different tissues/organs in pigs

description:   
Alternative splicing (AS) is an important post-transcriptional regulation that leads to transcriptome and proteome diversity. In this study, we performed a comprehensive AS profile in nine organs from Duroc (DR)(lean-type) and Luchuan (LC)(obese-type) pigs. Notably, 94,990 AS events (87% being novel) from 14,393 genes were identified. Of them, 80% of AS events were Skipped exon (SE) type. Functional enrichment analysis showed that genes with more than ten AS events are closely associated with organ-specific functions. The number of differentially alternative splice genes (DSG) between DR and LC pigs in the same organ ranged from 935 to 1655. We selected three DSGs including PYGM, MAPK11, and CAMK2B to validate by RT-PCR. Significantly, there were lowest and highest number of DSGs in subcutaneous adipose and the small intestine between two breeds, respectively. In addition, overlap analysis between DSG and differentially expressed genes (DEGs) showed that there were highest number of overlapped genes in heart (195) and skeletal muscle (138). The TNNT1, TNNT3 and PHGDH genes, which affect muscle development and metabolism, are highly expressed in these two tissues and undergo specific alternative splicing. In conclusion, our study provides novel insight into molecular regulation of different organ physiologies and phenotype difference between obese- and lean-type pigs. It is helpful not only for animal breeding, but also have important value for human biomedical research.
DOI: 10.6084/m9.figshare.22231678.v1
title: Regulation role of Alternative Splicing in physiologies characteriscs of different tissues/organs in pigs

description:   
Alternative splicing (AS) is an important post-transcriptional regulation that leads to transcriptome and proteome diversity. In this study, we performed a comprehensive AS profile in nine organs from Duroc (DR)(lean-type) and Luchuan (LC)(obese-type) pigs. Notably, 94,990 AS events (87% being novel) from 14,393 genes were identified. Of them, 80% of AS events were Skipped exon (SE) type. Functional enrichment analysis showed that genes with more than ten AS events are closely associated with organ-specific functions. The number of differentially alternative splice genes (DSG) between DR and LC pigs in the same organ ranged from 935 to 1655. We selected three DSGs including PYGM, MAPK11, and CAMK2B to validate by RT-PCR. Significantly, there were lowest and highest number of DSGs in subcutaneous adipose and the small intestine between two breeds, respectively. In addition, overlap analysis between DSG and differentially expressed genes (DEGs) showed that there were highest number of overlapped genes in heart (195) and skeletal muscle (138). The TNNT1, TNNT3 and PHGDH genes, which affect muscle development and metabolism, are highly expressed in these two tissues and undergo specific alternative splicing. In conclusion, our study provides novel insight into molecular regulation of different organ physiologies and phenotype difference between obese- and lean-type pigs. It is helpful not only for animal breeding, but also have important value for human biomedical research.
DOI: 10.6084/m9.figshare.22231678.v2
title: Regulation role of Alternative Splicing in physiologies characteriscs of different tissues/organs in pigs

description:   
Alternative splicing (AS) is an important post-transcriptional regulation that leads to transcriptome and proteome diversity. In this study, we performed a comprehensive AS profile in nine organs from Duroc (DR)(lean-type) and Luchuan (LC)(obese-type) pigs. Notably, 94,990 AS events (87% being novel) from 14,393 genes were identified. Of them, 80% of AS events were Skipped exon (SE) type. Functional enrichment analysis showed that genes with more than ten AS events are closely associated with organ-specific functions. The number of differentially alternative splice genes (DSG) between DR and LC pigs in the same organ ranged from 935 to 1655. We selected three DSGs including PYGM, MAPK11, and CAMK2B to validate by RT-PCR. Significantly, there were lowest and highest number of DSGs in subcutaneous adipose and the small intestine between two breeds, respectively. In addition, overlap analysis between DSG and differentially expressed genes (DEGs) showed that there were highest number of overlapped genes in heart (195) and skeletal muscle (138). The TNNT1, TNNT3 and PHGDH genes, which affect muscle development and metabolism, are highly expressed in these two tissues and undergo specific alternative splicing. In conclusion, our study provides novel insight into molecular regulation of different organ physiologies and phenotype difference between obese- and lean-type pigs. It is helpful not only for animal breeding, but also have important value for human biomedical research.
DOI: 10.21227/hfsv-dv39
title: Radiation pattern of patch and array-HIS antennas obtained with HFSS

description: The effect of phase changes along the antenna radiation pattern beamwidth and bandwidth on synthetic aperture radar (SAR) imaging is evaluated by means of electromagnetic simulations. Electromagnetic images have been obtained in order to characterize the effect of the non-uniform phase of the antenna radiation pattern on this type of measurements. Three different situations have been analyzed: i) phase variations across the angular range, ii) nonlinear phase shift across the working frequency band and iii) antenna phase center shift across the bandwidth. Far-field radiation pattern of the patch and the array-HIS antenna used in this study (obtained with Ansys HFSS high-frequency 3D simulation software) are provided.
DOI: 10.4121/02cbb452-4900-4c0a-95ae-5bdb5ce42ed7.v1
title: Code underlying the publication: Wind pattern clustering of high frequent field measurements for dynamic wind farm flow control

description: Code used to generate the wind direction time series used in the publication "<em>Wind pattern clustering of high frequent field measurements for dynamic wind farm flow control</em>" by M. Becker, D. Allaerts and J.W. van Wingerden (in preparation for the TORQUE conference 2024)<br>The <em>TenneT_BSA_</em>* files convert the raw data from the KNMI [1] into one file with all data at 119m height. This is equivalent to the hub-height of the DTU 10MW reference turbine. Note that there is a channels switch in the data. That's why there are two functions to read in the data.<br>The output dataset is given in the CombinedDataAt199m.csv file.<br>The two <em>hpc06_trajectories_</em>* files are then used to segment the data into time series of requested length. This code also contains the filtering and interpolation of the data. The output are two .csv files, one with wind direction trajectories and one with wind speed trajectories.<br>Two examples are given by WindDirTraj.csv and WindVelTraj.csv - they have been generated with a length of 30 data points and with an offset of 30 data points (no overlapping).<br>The code of hpc06_cluster_dir* can then be used to cluster the given data.<br>The remaining files are supplementary to plot data, to calculate distances in radial data etc. including the kmeans360.m function which is the modified function of the Matlab kmeans function which also works for radial data.<br>[1] https://dataplatform.knmi.nl/dataset/windlidar-nz-wp-platform-1s-1