cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14232690
title: Nonspherical core-shell oceanic particle single-scattering database

description: Updated Dec 5, 2024.

For questions, please contact: Dr. Ping Yang (project leader), pyang@tamu.edu

----------------------------------------------------Nonspherical core-shell oceanic particle single-scattering database

RRI: relative refractive index of aquatic material

File naming explanation:

Datasets begin with "set" and end with ".dat""****isca.dat" contains single-scattering properties (left to right 6 columns in total):size parameter; projected area; volume; extinction efficiency; single-scattering albedo; asymmetry factorRepeat for 93 sizes;Repeat above for 18 relative refractive indices (complex).In total 1674 rows.

"****phm.dat" contains phase matrices (left to right 6 columns in total):P_11   P_12/P_11   P_22/P_11   P_33/P_11   P_43/P_11   P_44/P_11721 scattering angles from 0 to 180 degrees with 0.25 degree interval;Repeat for 93 sizes;Repeat above for 18 relative refractive indices (complex).In total 1206954 rows.

The number after "set" varies from 0 to 7, indicating shell thickness setting:'0': Homogeneous'1': 5%'2': 10%'3': 20%'4': Average of cases 0 to 3.'5': Weighted average of cases 0 to 3, weights = [0.05,0.35,0.55,0.05]'6': Weighted average of cases 0 to 3, weights = [0.05,0.6,0.25,0.1]'7': Weighted average of cases 0 to 3, weights = [0.05,0.15,0.3,0.5]

The alphabet after number can be "a,b,c,d,x"There are in total 10 shapes numbered from 0 to 9. The shapes are rearranged in the order of sphericity.shape number = [4,9,6,8,5,2,3,7,0,1] (Sphericity from smallest to largest)sphericity = [0.64298,0.690126,0.704115,0.708696,0.72652,0.732807,0.750726,0.75268,0.761722,0.773472]'x': Equal weight for all 10 shapes.'a': Weight = [0.02,0.02,0.03,0.04,0.06,0.08,0.11,0.15,0.2,0.3]'b': Weight = [0.02,0.04,0.06,0.08,0.1,0.11,0.12,0.13,0.14,0.16]'c': Weight = [0.16,0.14,0.13,0.12,0.11,0.1,0.08,0.06,0.04,0.02]'d': Weight = [0.3,0.2,0.15,0.11,0.08,0.06,0.04,0.03,0.02,0.02]

-----------------------------------------------------------FORTRAN90 codes for retrieving single-scattering properties

spline.f90: Subroutines (written by John Barkadt, 1999) for spline interpolation

ref_interp.f90: The interpolation of single-scattering properties

main.f90: Main program

opsd.retrieve: Executable

------------------Retrieve a dataset

Input file examples:testsize.txttestwav.txttestref.dat (according to number of wavelengths)

Command line example:mkdir test1  #make a folder./opsd.retrieve 2 2 testsize.txt testwav.txt testref.dat x 4 test1Command line format:{executable} {number_of_sizes} {number_of_wavelengths} {size_input} {wavelength_input} {refractive_index_input} {shape_setting} {shell_setting} {folder_name}

-------------------------Example of output datasettest1/

7 files: isca.dat P11.dat P12.dat P22.dat P33.dat P43.dat P44.dat

isca.dat has 7 columns:

{wavelength} {particle_size} {projected_area} {volume} {extinction_efficiency} {single_scattering_albedo} {asymmetry_factor}

All data from P12.dat to P44.dat are already normalized as P_ij/P_11.
DOI: 10.5281/zenodo.14232691
title: Nonspherical core-shell oceanic particle single-scattering database

description: Updated Dec 4, 2024.

For questions, please contact: Dr. Ping Yang (project leader), pyang@tamu.edu

----------------------------------------------------Nonspherical core-shell oceanic particle single-scattering database

RRI: relative refractive index of aquatic material

File naming explanation:

Datasets begin with "set" and end with ".dat""****isca.dat" contains single-scattering properties (left to right 6 columns in total):size parameter; projected area; volume; extinction efficiency; single-scattering albedo; asymmetry factorRepeat for 93 sizes;Repeat above for 18 relative refractive indices (complex).In total 1674 rows.

"****phm.dat" contains phase matrices (left to right 6 columns in total):P_11   P_12/P_11   P_22/P_11   P_33/P_11   P_43/P_11   P_44/P_11721 scattering angles from 0 to 180 degrees with 0.25 degree interval;Repeat for 93 sizes;Repeat above for 18 relative refractive indices (complex).In total 1206954 rows.

The number after "set" varies from 0 to 7, indicating shell thickness setting:'0': Homogeneous'1': 5%'2': 10%'3': 20%'4': Average of cases 0 to 3.'5': Weighted average of cases 0 to 3, weights = [0.05,0.35,0.55,0.05]'6': Weighted average of cases 0 to 3, weights = [0.05,0.6,0.25,0.1]'7': Weighted average of cases 0 to 3, weights = [0.05,0.15,0.3,0.5]

The alphabet after number can be "a,b,c,d,x"There are in total 10 shapes numbered from 0 to 9. The shapes are rearranged in the order of sphericity.shape number = [4,9,6,8,5,2,3,7,0,1] (Sphericity from smallest to largest)sphericity = [0.64298,0.690126,0.704115,0.708696,0.72652,0.732807,0.750726,0.75268,0.761722,0.773472]'x': Equal weight for all 10 shapes.'a': Weight = [0.02,0.02,0.03,0.04,0.06,0.08,0.11,0.15,0.2,0.3]'b': Weight = [0.02,0.04,0.06,0.08,0.1,0.11,0.12,0.13,0.14,0.16]'c': Weight = [0.16,0.14,0.13,0.12,0.11,0.1,0.08,0.06,0.04,0.02]'d': Weight = [0.3,0.2,0.15,0.11,0.08,0.06,0.04,0.03,0.02,0.02]

-----------------------------------------------------------FORTRAN90 codes for retrieving single-scattering properties

spline.f90: Subroutines (written by John Barkadt, 1999) for spline interpolation

ref_interp.f90: The interpolation of single-scattering properties

main.f90: Main program

opsd.retrieve: Executable

------------------Retrieve a dataset

Input file examples:testsize.txttestwav.txttestref.dat (according to number of wavelengths)

Command line example:mkdir test1  #make a folder./opsd.retrieve 2 2 testsize.txt testwav.txt testref.dat x 4 test1Command line format:{executable} {number_of_sizes} {number_of_wavelengths} {size_input} {wavelength_input} {refractive_index_input} {shape_setting} {shell_setting} {folder_name}

-------------------------Example of output datasettest1/

7 files: isca.dat P11.dat P12.dat P22.dat P33.dat P43.dat P44.dat

isca.dat has 7 columns:

{wavelength} {particle_size} {projected_area} {volume} {extinction_efficiency} {single_scattering_albedo} {asymmetry_factor}

All data from P12.dat to P44.dat are already normalized as P_ij/P_11.
DOI: 10.5281/zenodo.14285503
title: Nonspherical core-shell oceanic particle single-scattering database

description: Updated Dec 5, 2024.

For questions, please contact: Dr. Ping Yang (project leader), pyang@tamu.edu

----------------------------------------------------Nonspherical core-shell oceanic particle single-scattering database

RRI: relative refractive index of aquatic material

File naming explanation:

Datasets begin with "set" and end with ".dat""****isca.dat" contains single-scattering properties (left to right 6 columns in total):size parameter; projected area; volume; extinction efficiency; single-scattering albedo; asymmetry factorRepeat for 93 sizes;Repeat above for 18 relative refractive indices (complex).In total 1674 rows.

"****phm.dat" contains phase matrices (left to right 6 columns in total):P_11   P_12/P_11   P_22/P_11   P_33/P_11   P_43/P_11   P_44/P_11721 scattering angles from 0 to 180 degrees with 0.25 degree interval;Repeat for 93 sizes;Repeat above for 18 relative refractive indices (complex).In total 1206954 rows.

The number after "set" varies from 0 to 7, indicating shell thickness setting:'0': Homogeneous'1': 5%'2': 10%'3': 20%'4': Average of cases 0 to 3.'5': Weighted average of cases 0 to 3, weights = [0.05,0.35,0.55,0.05]'6': Weighted average of cases 0 to 3, weights = [0.05,0.6,0.25,0.1]'7': Weighted average of cases 0 to 3, weights = [0.05,0.15,0.3,0.5]

The alphabet after number can be "a,b,c,d,x"There are in total 10 shapes numbered from 0 to 9. The shapes are rearranged in the order of sphericity.shape number = [4,9,6,8,5,2,3,7,0,1] (Sphericity from smallest to largest)sphericity = [0.64298,0.690126,0.704115,0.708696,0.72652,0.732807,0.750726,0.75268,0.761722,0.773472]'x': Equal weight for all 10 shapes.'a': Weight = [0.02,0.02,0.03,0.04,0.06,0.08,0.11,0.15,0.2,0.3]'b': Weight = [0.02,0.04,0.06,0.08,0.1,0.11,0.12,0.13,0.14,0.16]'c': Weight = [0.16,0.14,0.13,0.12,0.11,0.1,0.08,0.06,0.04,0.02]'d': Weight = [0.3,0.2,0.15,0.11,0.08,0.06,0.04,0.03,0.02,0.02]

-----------------------------------------------------------FORTRAN90 codes for retrieving single-scattering properties

spline.f90: Subroutines (written by John Barkadt, 1999) for spline interpolation

ref_interp.f90: The interpolation of single-scattering properties

main.f90: Main program

opsd.retrieve: Executable

------------------Retrieve a dataset

Input file examples:testsize.txttestwav.txttestref.dat (according to number of wavelengths)

Command line example:mkdir test1  #make a folder./opsd.retrieve 2 2 testsize.txt testwav.txt testref.dat x 4 test1Command line format:{executable} {number_of_sizes} {number_of_wavelengths} {size_input} {wavelength_input} {refractive_index_input} {shape_setting} {shell_setting} {folder_name}

-------------------------Example of output datasettest1/

7 files: isca.dat P11.dat P12.dat P22.dat P33.dat P43.dat P44.dat

isca.dat has 7 columns:

{wavelength} {particle_size} {projected_area} {volume} {extinction_efficiency} {single_scattering_albedo} {asymmetry_factor}

All data from P12.dat to P44.dat are already normalized as P_ij/P_11.
DOI: 10.5519/qd.3w6s5ng9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.14285557
title: softdisorder

description: Analysis of the missing and soft disordered sites in the entire PDB
DOI: 10.5281/zenodo.14285558
title: softdisorder

description: Analysis of the missing and soft disordered sites in the entire PDB
DOI: 10.15468/dl.y796sk
title: Occurrence Download

description: A dataset containing 15988 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magdalis E.F.Germar, 1817"
 ]
}

 The dataset includes 15988 records from 427 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021132-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tw6fqg
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyphomyia androgyna Osten Sacken, 1886"
 ]
}

 The dataset includes 247 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021134-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxxru2
title: Occurrence Download

description: A dataset containing 60174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bagre marinus (Mitchill, 1815)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 60174 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021135-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2kgrf7
title: CCDC 2367669: Experimental Crystal Structure Determination

description: Related Article: Tribani Boruah, Ren Ishizeki, Alberto Roldan, Rebecca L. Melen, Thomas Wirth|2024|Green Chemistry|26|11722|doi:10.1039/D4GC04450A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kgrg8
title: CCDC 2367670: Experimental Crystal Structure Determination

description: Related Article: Tribani Boruah, Ren Ishizeki, Alberto Roldan, Rebecca L. Melen, Thomas Wirth|2024|Green Chemistry|26|11722|doi:10.1039/D4GC04450A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.rr3gpe
title: Occurrence Download

description: A dataset containing 97109 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is UCM Invertebrate Paleontology"
 ]
}

 The dataset includes 97109 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021136-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69fn7b
title: Occurrence Download

description: A dataset containing 746 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biobanco de parásitos intestinales del Instituto Nacional de Salud"
 ]
}

 The dataset includes 746 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021138-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5fx74944
title: MassIVE MSV000096597 - Bulk proteomic analysis of H4 TMEM175 genotypes (+/- starvation)
title: Bulk proteomic analysis of H4 TMEM175 genotypes (+/- starvation)
DOI: 10.15468/dl.3sd4zd
title: Occurrence Download

description: A dataset containing 71847 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bairdiella chrysoura (Lacepède, 1802)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 71847 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021139-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvhcdx
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-12.89889 50.93343,-0.53523 50.93343,-0.53523 55.88318,-12.89889 55.88318,-12.89889 50.93343))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Semilimax pyrenaicus (A.Férussac, 1821)"
 ]
}

 The dataset includes 74 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021140-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5683/sp2/cwj7io
title: Regional variability in the response of alpine treelines to climate change

description: The distributions of many high-elevation tree species have shifted as a result of recent climate change; however, there is substantial variability in the movement of alpine treelines at local to regional scales. In this study, we derive records of tree growth and establishment from nine alpine treeline ecotones in the Canadian Rocky Mountains, characterise the influence of seasonal climate variables on four tree species (Abies lasiocarpa, Larix lyallii, Picea engelmannii, Pinus albicaulis) and estimate the degree to which treeline movement in the twentieth century has lagged or exceeded the rate predicted by recent temperature warming. The growth and establishment records revealed a widespread increase in radial growth, establishment frequency and stand density beginning in the mid-twentieth century. Coinciding with a period of warming summer temperatures and favourable moisture availability, these changes appear to have supported upslope treeline advance at all sites (range, 0.23–2.00 m/year; mean, 0.83 + 0.67 m/ year). However, relationships with seasonal climate variables varied between species, and the rates of treeline movement lagged those of temperature warming in most cases. These results indicate that future climate change impacts on treelines in the region are likely to be moderated by species composition and to occur more slowly than anticipated based on temperature warming alone.
DOI: 10.15468/dl.e2vj8f
title: Occurrence Download

description: A dataset containing 1820 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-122.05608 36.25245,-121.78129 36.25245,-121.78129 36.67685,-122.05608 36.67685,-122.05608 36.25245))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phoca Linnaeus, 1758",
 "Year 2010-2024"
 ]
}

 The dataset includes 1820 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021141-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkb7gt
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-12.41165 40.58839,12.31566 40.58839,12.31566 50.48789,-12.41165 50.48789,-12.41165 40.58839))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Semilimax pyrenaicus (A.Férussac, 1821)"
 ]
}

 The dataset includes 196 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021143-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rs8ed7
title: Occurrence Download

description: A dataset containing 243 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calamus arctifrons Goode & Bean, 1882",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 243 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021144-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u34ubp
title: Occurrence Download

description: A dataset containing 5653 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "TaxonKey is Bison bison (Linnaeus, 1758)",
 "Year 1924-2024"
 ]
}

 The dataset includes 5653 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021142-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxevfg
title: Occurrence Download

description: A dataset containing 382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Harmsiopanax Warb."
 ]
}

 The dataset includes 382 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021145-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bn99vm
title: Occurrence Download

description: A dataset containing 3956 species occurrences available in GBIF matching the query:
{
 "and" : [
 "IucnRedListCategory is NT",
 "TaxonKey is Hippocampus reidi Ginsburg, 1933"
 ]
}

 The dataset includes 3956 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021146-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2a9yhw
title: Occurrence Download

description: A dataset containing 19331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calamus bajonado (Bloch & Schneider, 1801)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19331 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021147-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7m4wp
title: Occurrence Download

description: A dataset containing 18424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calamus nodosus Randall & Caldwell, 1966",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18424 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021149-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2kgrh9
title: CCDC 2367671: Experimental Crystal Structure Determination

description: Related Article: Tribani Boruah, Ren Ishizeki, Alberto Roldan, Rebecca L. Melen, Thomas Wirth|2024|Green Chemistry|26|11722|doi:10.1039/D4GC04450A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kqy19
title: CCDC 2375531: Experimental Crystal Structure Determination

description: Related Article: Kabali Divya Bharathi, Arasambattu K Mohanakrishnan|2024|Chem.Commun.|60|13590|doi:10.1039/D4CC04572F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ksw6g
title: CCDC 2377396: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccxq9nk
title: CCDC 855589: Experimental Crystal Structure Determination

description: Related Article: Deepanjali PANDEY|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ksynz
title: CCDC 2377472: Experimental Crystal Structure Determination

description: Related Article: Feng Su|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.