cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0131638.10fu
title: SH0131638.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.14537702
title: DFT- and GFN1-xTB-optimized structures of 5 MOFs

description: The archive contains structures in CIF format of 5 MOFs: 1) the original CoRE structures, 2) DFT(PBE+D3)-optimized structures, 3) GFN1-xTB-optimized structures.

The CSD reference codes for the structures are following:1) MOF-5(ZN) MIBQAR,2) IRMOF(II)-74(Mg) RAVVUH,3) ZIF-8(Zn) EWIDUK,4) MIL-53(Al) EHALOP (LP phase) and SABWAU (NP phase),5) MIL-53(Fe) SADMUH (LP phase) and SADMIV (NP phase).
DOI: 10.5281/zenodo.14537703
title: DFT- and GFN1-xTB-optimized structures of 5 MOFs

description: The archive contains structures in CIF format of 5 MOFs: 1) the original CoRE structures, 2) DFT(PBE+D3)-optimized structures, 3) GFN1-xTB-optimized structures.

The CSD reference codes for the structures are following:1) MOF-5(ZN) MIBQAR,2) IRMOF(II)-74(Mg) RAVVUH,3) ZIF-8(Zn) EWIDUK,4) MIL-53(Al) EHALOP (LP phase) and SABWAU (NP phase),5) MIL-53(Fe) SADMUH (LP phase) and SADMIV (NP phase).
DOI: 10.15468/dl.xnjsjh
title: Occurrence Download

description: A dataset containing 1301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Magallana gigas (Thunberg, 1793)",
 "Country is Norway",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1301 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044583-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28012280
title: raw files for Kil project 2024

description: <b>Bacteriophage Kil peptide folds into a predicted helix-turn-helix structure to disrupt </b><b><i>Escherichia coli</i></b><b> cell division</b>
DOI: 10.6084/m9.figshare.28012280.v1
title: raw files for Kil project 2024

description: <b>Bacteriophage Kil peptide folds into a predicted helix-turn-helix structure to disrupt </b><b><i>Escherichia coli</i></b><b> cell division</b>
DOI: 10.15468/dl.h53ksv
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Capercaillie national surveys"
 ]
}

 The dataset includes 237 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044584-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14537714
title: Hyperkvasir_100k formatted
DOI: 10.5281/zenodo.14537715
title: Hyperkvasir_100k formatted
DOI: 10.15468/dl.4uw32n
title: Occurrence Download

description: A dataset containing 27628 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Muntiacus reevesi (Ogilby, 1839)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 27628 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044585-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p14fnbf7
title: Application of the National Hydrologic Model Infrastructure with the Precipitation-Runoff Modeling System for Puerto Rico, Geospatial Fabric version 1.0, and Daymet version 4 Atmospheric Forcings, 1950-2021

description: This data release contains inputs for and outputs from hydrologic simulations for Puerto Rico using the Precipitation Runoff Modeling System (PRMS) version 5.2.1, the USGS National Hydrologic Model infrastructure (NHM, Regan and others, 2018), National Hydrologic Geospatial Fabric version 1.0 (Viger and Bock, 2014), and the Daymet version 4 (Thornton et. al., 2020) atmospheric forcing dataset. These simulations were developed to provide estimates of the water budget for the period 1950 to 2021. The model parameters and associated model output included in this data release are described in Swain and Bellino (2022). Specific data included are: 1) model input files, 2) output files of simulated water budget components for each hydrologic response unit (HRU) and stream segment, and 3) performance statistics at selected streamgage locations. The first three years of the simulations are considered 'model initialization' and should not be included in any subsequent analysis.

Model input files, located on the “ Input Data for Hydrologic Simulations of Puerto Rico using the NHM-PRMS, 1950-2021, Daymet version 4” child page, include ASCII formatted PRMS input files of 1) daily time step atmospheric forcings of minimum air temperature (tmin.day), maximum air temperature (tmax.day), precipitation accumulation (precip.day), and humidity (humidity.day), 2) PRMS model parameters (NHM-PRMS.param), 3) a PRMS control file that provides the simulation configuration information (NHM-PRMS_data_release.control), 4) and the PRMS data file that includes time series of streamflow observations (sf_data). Descriptions of model input parameters are included in the parameters_data_dictionary.csv file on this main page. Descriptions of control file parameters are included in the control_data_dictionary.csv file on this main page. Additional information about the model calibration and associated parameters is provided in Swain and Bellino (2022).

Model output files, located on the “Output Data for Hydrologic Simulations of Puerto Rico using the NHM-PRMS, 1950-2021, Daymet version 4” child page, include 18 PRMS output variables for the model simulation. Each NetCDF format output file contains daily time step outputs for the period 1950-2021 for each hydrologic response unit or stream segment in the model application. Descriptions of model output variables are included in the output_variables_data_dictionary.csv file on this main page.

Streamflow statistics of model performance at selected streamgages are located on this main page (gage_stats_pr.csv).
DOI: 10.6084/m9.figshare.23750745
title: Fibronectin Fibril Optical Tweezer-Based Mechanical Data from Dalton, et al

description: Optical tweezing of cell-derived fibronectin fibrils. Data includes all stress-time data used for stress relaxation analysis (found in Dalton Et Al Stress-Time Stress Relaxation Raw Data BMM2024.prism) and stress-strain data (units: Pa) (found in Dalton Et Al Stress-Strain Raw Data BMM2024.prism).
DOI: 10.6084/m9.figshare.23750745.v1
title: Fibronectin Fibril Optical Tweezer-Based Mechanical Data from Dalton, et al

description: Optical tweezing of cell-derived fibronectin fibrils. Data includes all stress-time data used for stress relaxation analysis (found in Dalton Et Al Stress-Time Stress Relaxation Raw Data BMM2024.prism) and stress-strain data (units: Pa) (found in Dalton Et Al Stress-Strain Raw Data BMM2024.prism).
DOI: 10.15468/dl.c8dmvv
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-85.81262 -37.54613,-24.47364 -37.54613,-24.47364 16.2174,-85.81262 16.2174,-85.81262 -37.54613))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Urochloa subquadripara (Trin.) R.D.Webster"
 ]
}

 The dataset includes 94 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044586-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14537745
title: Support Data Operational Efficiency of Pharmaceutical Companies in China Based on Three Stage DEA with Undesirable Outputs

description: Sheet 1 contains the original input values, output values, and environmental variables, along with the first-stage results: Technical Efficiency (TE), Pure Technical Efficiency (PTE), Scale Efficiency (SE), and Input Slack. It also includes the adjusted input values from the second stage and the third-stage results: TE, PTE, and SE.

Sheets 2–5 provide a detailed breakdown of the adjustment calculation processes for the four input variables.
DOI: 10.5281/zenodo.14537746
title: Support Data Operational Efficiency of Pharmaceutical Companies in China Based on Three Stage DEA with Undesirable Outputs

description: Sheet 1 contains the original input values, output values, and environmental variables, along with the first-stage results: Technical Efficiency (TE), Pure Technical Efficiency (PTE), Scale Efficiency (SE), and Input Slack. It also includes the adjusted input values from the second stage and the third-stage results: TE, PTE, and SE.

Sheets 2–5 provide a detailed breakdown of the adjustment calculation processes for the four input variables.
DOI: 10.5281/zenodo.14537716
title: Dataset from Frantz et al. Global change factors and Hydrae communities presence and abundance
DOI: 10.5281/zenodo.14537717
title: Dataset from Frantz et al. Global change factors and Hydrae communities presence and abundance
DOI: 10.6084/m9.figshare.28057181
title: Intestine_ion count matrix

description: MALDI imaging mass spec data. Each data matrix contains spatial coordinates of each pixel (first two columns), Total ion count (third column), and raw ion counts for compounds (each column represents a compound). Data collected for small intestine from fasted mice (spatial metabolomics), JV-infused mice with stable isotope tracers (glutamine = gln; lactate = lact) and orally administered fructose (fruc). Each mouse is represented by a number in the file name. Letters (e.g., "A") that follow mouse number correspond to a separate tissue region from the same mouse.For compound ID (putative), refer to files "peaklist". Relevant compound ID files can be found in the file "ion count to peak list_intestine.xlsx".Updates: updated metabolomics file name; added fructose data; added peak lists for compound ID
DOI: 10.6084/m9.figshare.28057181.v2
title: Intestine_ion count matrix

description: MALDI imaging mass spec data. Each data matrix contains spatial coordinates of each pixel (first two columns), Total ion count (third column), and raw ion counts for compounds (each column represents a compound). Data collected for small intestine from fasted mice (spatial metabolomics), JV-infused mice with stable isotope tracers (glutamine = gln; lactate = lact) and orally administered fructose (fruc). Each mouse is represented by a number in the file name. Letters (e.g., "A") that follow mouse number correspond to a separate tissue region from the same mouse.For compound ID (putative), refer to files "peaklist". Relevant compound ID files can be found in the file "ion count to peak list_intestine.xlsx".Updates: updated metabolomics file name; added fructose data; added peak lists for compound ID
DOI: 10.6084/m9.figshare.28057181.v1
title: Intestine_ion count matrix

description: MALDI imaging mass spec data. Each data matrix contains spatial coordinates of each pixel (first two columns), Total ion count (third column), and raw ion counts for compounds (each column represents a compound). Data collected for small intestine from fasted mice (spatial metabolomics), JV-infused mice with stable isotope tracers (glutamine = gln; lactate = lact) and orally administered fructose (fruc). Each mouse is represented by a number in the file name. Letters (e.g., "A") that follow mouse number correspond to a separate tissue region from the same mouse.
DOI: 10.15468/dl.2kkpe3
title: Occurrence Download

description: A dataset containing 7746 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-88.29096 -38.03578,-26.33239 -38.03578,-26.33239 16.2174,-88.29096 16.2174,-88.29096 -38.03578))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)"
 ]
}

 The dataset includes 7746 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044587-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wv7bs8
title: Occurrence Download

description: A dataset containing 11576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ARG, CHL, PRY, URY, FLK, BRA.21_1, BRA.16_1, BRA.24_1)",
 "TaxonKey is Fagales"
 ]
}

 The dataset includes 11576 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044588-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8f5jm
title: Occurrence Download

description: A dataset containing 3939 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-88.29096 -40.90481,-24.47364 -40.90481,-24.47364 17.40359,-88.29096 17.40359,-88.29096 -40.90481))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aedes albopictus (Skuse, 1894)"
 ]
}

 The dataset includes 3939 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044589-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wppr6v
title: Occurrence Download

description: A dataset containing 732 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cryptobranchus alleganiensis alleganiensis)"
 ]
}

 The dataset includes 732 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044590-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9x8mu
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Crystallaria cincotta Welsh & Wood, 2008)"
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044593-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkr5gq
title: Occurrence Download

description: A dataset containing 33043 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pomacanthus paru (Bloch, 1787)"
 ]
}

 The dataset includes 33043 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044594-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10257276
title: democracy easier to access
DOI: 10.5066/p15tmwwp
title: Methane and carbon dioxide concentration data, environmental data, and calculations used to determine sea-air flux on the northern Greenland margin

description: Determining how much methane and carbon dioxide cross the sea-air interface is critical when assessing marine greenhouse gas fluxes. This assessment is particularly important on Arctic Ocean continental margins, where rapid climate change is thawing glacial ice and permafrost; reducing sea ice cover; and changing water temperatures, salinities, nutrient loads, and ocean currents. This dataset was collected in the Sherard Osborn Fjord and adjacent areas of the Nares Strait and Lincoln Sea on the northern Greenland margin during the 2019 Ryder Expedition (known as SWEDARCTIC Ryder 2019), which is also identified as U.S. Geological Survey (USGS) Coastal and Marine Hazards and Resources Program Field Activity 2019-042-FA. The University of Stockholm led the expedition aboard the Swedish icebreaker Oden (IB Oden), in collaboration with the University of New Hampshire and the USGS. The dataset contains 30-second interpolated methane and carbon dioxide concentrations in near-surface seawater and the atmospheric marine boundary layer and provides the calculations used to determine the sea-air flux. The dataset also contains environmental data, including seawater salinity, wind speed, water and air temperatures, water depth, seawater pH, seawater dissolved oxygen, seawater fluorescent dissolved organic matter, seawater oxidation-reduction potential, seawater phycoerythrin, and seawater chlorophyll.
DOI: 10.15468/dl.yndzzh
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.53013 -38.52215,-30.04991 -38.52215,-30.04991 16.21738,-89.53013 16.21738,-89.53013 -38.52215))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibalanus amphitrite (Darwin, 1854)"
 ]
}

 The dataset includes 137 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044596-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d65rtz
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-84.57345 -38.03578,-25.7128 -38.03578,-25.7128 15.024,-84.57345 15.024,-84.57345 -38.03578))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibalanus reticulatus (Utinomi, 1967)"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044597-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/f70c4v25
title: Adirondack and Catskill Stream-Fish Survey Dataset (ver. 8.0, December 2024)

description: The dataset is composed of two data tables containing information from electrofishing surveys conducted in the Catskill and Adirondack regions. The first data table contains fish collection information and the second data table contains information on the sampled reaches.

First posted September 25, 2018, ver. 1.0
Revised July 2019, ver. 2.0
Revised November 2020, ver. 3.0
Revised March 2022, ver. 4.0
Revised September 2022, ver. 5.0
Revised February 2023, ver. 6.0
Revised December 2023, ver. 7.0
Revised December 2024, ver. 8.0
DOI: 10.15468/dl.275rhe
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((38.57969 31.23188,82.42031 31.23188,82.42031 48.76812,38.57969 48.76812,38.57969 31.23188))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Barbastella caspica Satunin, 1908"
 ]
}

 The dataset includes 41 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044599-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d6jn4e
title: Occurrence Download

description: A dataset containing 30293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-87.05179 -37.54613,-29.43032 -37.54613,-29.43032 15.02402,-87.05179 15.02402,-87.05179 -37.54613))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Apis mellifera Linnaeus, 1758"
 ]
}

 The dataset includes 30293 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044598-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18126/v5sj-6q93
title: D3TaLES: DFT Computations for Redox-Active Small Organic Molecule
DOI: 10.15468/dl.npx2zp
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.53013 -38.52215,-25.09321 -38.52215,-25.09321 16.2174,-89.53013 16.2174,-89.53013 -38.52215))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arapaima gigas (Schinz, 1822)"
 ]
}

 The dataset includes 292 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044600-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xq26nc
title: Occurrence Download

description: A dataset containing 2764 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-87.67137 -36.0579,-30.04991 -36.0579,-30.04991 14.42478,-87.67137 14.42478,-87.67137 -36.0579))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bubalus bubalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 2764 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044601-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.