cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12624035.v1
title: Supplementary Material for: Thyroid Hormones within the Normal Range and Cardiac Function in the General Population: The EPIPorto Study

description: <b><i>Background:</i></b> Hypothyroidism and hyperthyroidism are associated with marked changes in cardiac structure and function. However, the association of thyroid function within the normal range with cardiac structure and function in the general population remains uncertain. <b><i>Methods:</i></b> Eight hundred thirty-five subjects aged ≥45 years from the EPIPorto cohort (evaluation between 2006 and 2008) were cross-sectionally analyzed. We excluded participants with TSH, free T4 (FT4), or free T3 (FT3) outside of the reference range or with self-reported cardiovascular or thyroid disease. Cardiac structure and function were evaluated by echocardiography. We used linear regression models unadjusted and adjusted for sex and age (model 1), and sex, age, BMI, diabetes, hypertension, and smoking (model 2). Nonlinear associations were assessed using restricted cubic splines. <b><i>Results:</i></b> The mean age was 61.5 years (SD 10.5); 61.1% of the patients were women. In the adjusted model 2, heart rate was positively associated with FT3; diastolic blood pressure was positively associated with TSH; LV end-diastolic and end-systolic volumes were inversely associated with TSH, and ejection fraction was nonlinearly associated with FT3, with higher ejection fractions near the limits of the reference range. Left ventricle (LV) posterior wall thickness was nonlinearly associated with FT4 in the adjusted model 1, with a greater thickness near the limits of the reference range. Regarding diastolic function, no significant associations were observed in adjusted models. <b><i>Conclusions:</i></b> Thyroid function within the reference range was associated with heart rate, blood pressure, cardiac structure, and function. Increasing thyroid function (lower TSH, higher FT4, or higher FT3) was associated with a higher heart rate, a lower diastolic blood pressure, and larger LV volumes. LV wall thickness and ejection fraction had a U-shaped association with thyroid hormones.
DOI: 10.6084/m9.figshare.28015220.v1
title: Posttraumatic Stress Disorder Checklist for DSM-5 - EFA.xls

description: The instrument used is PCL-5 which is a 20 item instrument that measures the PTSD symptomatology based on the diagnostic criteria outlined in the DSM-5. The answers were in a form of a 5-point Likert scale to rate each item from 0 (not at all) to 4 (extremely) to indicate the concern about that particular symptom over the past month. A score of 2 (moderately) or greater is considered as an endorsed symptom. The scoring procedures used yielded a dichotomous indicator of diagnostic rank (of probable PTSD).<br><br>Construct validity was examined through Exploratory Factor Analysis (EFA) with an oblique “Promax” rotation. Oblique rotation is suitable for the investigation of latent constructs for which one expects to extract correlated dimensions. We used the Promax with Kaiser Normalization since the correlation between the factors was above 0.6. We performed an EFA as we seek to identify the smallest number of interpretable factors that can adequately explain the correlations among a set of PCL-5 items. Kaiser-Meyer-Olkin (KMO) and Bartlett’s test of sphericity were used to test for the appropriateness of factor analysis. The KMO measure may vary between 0 and 1; high values of sphericity mean that the variables are correlated and the analysis is feasible.<br><br>This study was approved by the Institutional Review Board (IRB) committee of the SGHUMC Faculty of Medicine, University of Balamand, Lebanon, which is registered with the U.S Office of Human Research Protections (OHRP) in the Department of Health and Human Services.
DOI: 10.6084/m9.figshare.28451828.v1
title: Biscutella genome assembly and annotations

description: Here, we sequenced and assembled eight <i>Biscutella</i> genomes with different chromosome numbers (<i>n</i> = 6, 8 or 9) and sizes (0.6 to 1.1 Gb).
DOI: 10.6084/m9.figshare.7212230.v2
title: Shenzhen_whole_day_Speeds

description: The data are composed by the coordinates of the intersection (NODES) of the road map (LINKS) of the downtown of Shenzhen, China. In the file SPEEDS there are the estimation of the space-mean links speed every 5 mins computed after a map matching algorithm of available of about 20,000 taxis' GPS points with the road map. The day taken in consideration are the 7th, 8th and 9th September 2011.
DOI: 10.17632/gx75cp3g4z
title: DATASET_CCT

description: dataset; cognitive composition test may be useful as an early discriminator of mild cognitive impairment
DOI: 10.6084/m9.figshare.13789354.v3
title: Dataset of geochemistry, P-T data and Re-Os isotopic compositions of peridotites from Arctic Canada

description: The dataset provides the whole-rock and mineral major and trace contents for peridotites from Arctic Canada as well as their whole-rock Re-Os isotopic compositions and P-T data.
DOI: 10.6084/m9.figshare.28193567.v1
title: Supplementary Material for: Subungual eccrine poroma: an unusual location

description: Introduction: Eccrine poroma is a rare benign adnexal tumor that originates from the acrosyringium of eccrine sweat ducts, typically found on palms and soles. Its occurrence in subungual location is rare, making diagnosis and treatment challenging. We present the details of subungual eccrine poroma, emphasizing its unusual presentation, dermoscopic features and management. 
Case Presentation: A 36-year-old female presented with a slowly-growing, asymptomatic, reddish subungual mass under the left index finger nail for past 5 years. Onychoscopy showed a reddish-pink homogenous area with keratotic borders, reddish globules and dotted vessels. An excisional biopsy was done and a final diagnosis of eccrine poroma was made on histopathology, with no recurrence over 6 months of follow-up.
Conclusion: Given the rarity of subungual involvement, our case highlights the importance of considering eccrine poroma in the differential diagnosis of subungual tumors. Onychoscopy can aid in diagnosis and differentiation from other subungual masses; though a definitive diagnosis requires histopathology.
DOI: 10.6084/m9.figshare.28873862.v1
title: Table 2. Clusters of Orthologous Groups (COGs) Analysis of L. rhamnosus B3421 Using EggNOG..xlsx

description: Table 2.COG Annotation of L. rhamnosus B3421 Using EggNOG.
DOI: 10.6084/m9.figshare.6504647.v1
title: Efect of plant extracts applied in soil on sclerotinia sclerotiorum and common bean plants

description: ABSTRACT The pathogen Sclerotinia sclerotiorum can attack over 400 plant species such as potatoes, soybeans and sunflowers. This study aimed to identify the most adequate soil:sand proportion for the carpogenic germination of S. sclerotiorum sclerotia, as well as to evaluate the effect of plant extracts and their fractions on the carpogenic germination of sclerotia and on common bean plants. To identify the most adequate soil:sand proportion, the percentage of carpogenic germination was calculated. To evaluate the effect of plant extracts and fractions on sclerotia, the extracts and fractions were applied on the day the experiment was installed and after 30 days in soil:sand (1:1) substrate infested with sclerotia. To evaluate the effect of plant extracts and fractions on bean plants, the plant extracts were sprayed on plants at 30 days after sowing. Sclerotia showed greater carpogenic germination at 1:1 and 1:2 soil:sand substrate proportions. There was lower carpogenic germination for the ethyl acetate fraction obtained from vetch and the ethyl acetate fraction from S. terebinthifolius when applied at 30 days after the experiment was installed. The extracts did not present phytotoxicity to bean plants.
DOI: 10.17632/3n9mbjjf7v
title: Data for: Hypercomplex-Valued Recurrent Correlation Neural Networks

description: The Julia source-codes of some hypercomplex-valued ECNNs as described in the paper "Hypercomplex-Valued Recurrent Correlation Neural Networks" by Marcos Eduardo Valle and Rodolfo Lobo. The Jupyter-notebook of the computational experiments is also available in this repository.
DOI: 10.6084/m9.figshare.25139561.v1
title: <b>Chromosome-scale genome assembly of medicinal plant </b><b><i>Tinospora sagittata</i></b><b> (Oliv.) Gagnep.</b>

description: We, herein, report the assembly of a high-quality chromosome-scale genome with both PacBio HiFi and Illumina sequencing technologies.
DOI: 10.6084/m9.figshare.27310782.v1
title: Research Data for Unequal contributions of climate change and human activities to vegetation dynamics across ecosystem types in China

description: This is the input data for sen-mk detection, including KNDVI and meteorological data.
DOI: 10.6084/m9.figshare.27798423.v1
title: <b>Understanding Communities Perspectives on Ecosystem-Based Adaptation in an urban context: The City of Tshwane in Gauteng, South Africa, as a model city for the investigation</b>

description: <b>Data collected for Understanding Communities Perspectives on Ecosystem-Based Adaptation in an urban context: The City of Tshwane in Gauteng, South Africa, as a model city for the investigation</b>
DOI: 10.6084/m9.figshare.28432499.v1
title: The SESAME Human-Earth Atlas

description: The Surface Earth System Analysis and Modeling Environment (SESAME) Human-Earth Atlas includes hundreds of variables capturing both human and non-human aspects of the Earth system on two common spatial grids of 1- and 0.25-degree resolution. The Atlas is structured by common spheres, and many variables resolve changes over time. Many of the national-level tabular human system variables are downscaled to spatial grids using dasymetric mapping, accounting for country boundary changes over time. An associated software toolbox allows users to add raster, point, line, polygon, and tabular datasets, transforming them onto a standardized spatial grid at the desired resolution as well as to work conveniently with jurisdictional (e.g. country) data.



File Description:
atlas: Contains netCDF files at 1-degree resolution in netCDF format.
atlas_p25: Contains selected netCDF files at 0.25-degree resolution.
genscripts: Original Jupyter notebook scripts used to generate the atlas.
SESAME_Atlas_Documentation_v1.pdf: Documentation file for the SESAME Human-Earth Atlas.
SESAME_Human-Earth_Atlas_v1.xlsx: Comprehensive summary and documentation for the SESAME Human-Earth Atlas, including details on pre- and post-processing steps.
DOI: 10.25452/figshare.plus.25512334.v1
title: ChinaExtreDroEventSet (v1.0): Extreme meteorological drought events over China (1951-2022)

description: The Dataset and Event list prefixed with <i>ChinaExtreDroEventSet(v1.0)_</i> are the supplement files of the manuscript entitled “Extreme Meteorological Droughts over China (1951—2022): event detection, migration pattern, and diversity of temperature extremes”. The manuscript has been submitted to <i>Advanced in Atmospheric Sciences</i> (AAS) for the second-round review.<br>(1) Dataset<i>ChinaExtreDroEventSet(v1.0)_01_Dataset_AAS_LiuZhou2024_20240330.zip</i> contains data files of Extreme Meteorological Droughts over China (1951—2022).The first-level file name (e.g., Dro-06_P0_m1p0_40pts) consists of a drought event order (e.g., Dro-06), patch code (e.g., P0), parameter configuration for event detection (e.g., m1p0_40pts). Regarding patch code, <i>P0</i> means the unique patch representing the drought event, while <i>Pi</i> (i=1,2,.., N) are separated patches belonged to a complete drought event. Regarding parameter configuration for event detection, (e.g., m1p0_40pts). The string <i>m1p0</i> represents that the input 3D discrete gridded dataset for the DBSCAN algorithm, with SPAI less than −1.0. The string <i>40pts</i>, one significant parameter (i.e., min_samples) of the DBSCAN algorithm (Ester et al., 1996), is the number of sample points within a given search distance. Details are provided in Liu et al. (2023, AOSL).Regarding the specific files of each drought event, the formats and meanings are identical to those in the Glo3DHydroClimEventSet(v1.0) database (Liu and Zhou, 2023).<br>(2) Event ListThe ChinaExtreDroEventSet(v1.0)_02_EventList_AAS_LiuZhou2024_20240330.docx list metrics and ranks of all drought events, as part of the manuscript.
DOI: 10.6084/m9.figshare.22332352.v2
title: HCC Immunotherapy Stereo-seq Data

description: We collected additional tumor tissues from the initial resection of two early-stage HCC patients for Stereo-seq. These patients were later put on immunotherapy with atezolizumab + bevacizumab after the recurrence and exhibited a clinical response (M311) or resistance (M316) to the combination therapy.
DOI: 10.6084/m9.figshare.25307374.v10
title: Compiler Design and Program Datasets - Course TC3002B

description: List of Source Codes used in Creating the example of Compiler Program and Exercises in Course - Development of Advanced Applications of Computer Science (TC3002B)
DOI: 10.6084/m9.figshare.28087769.v1
title: Supplementary materials

description: Additional material to the manuscript (<b>Combining whole </b><b>genome</b><b> </b><b>and transcriptome </b><b>sequencing</b><b> to analyze the pathogenic mechanism of </b><b><i>Diplodia</i></b> <b><i>sapinea</i></b><b> blight in </b><b><i>Pinus sylvestris </i></b><b>var. </b><b><i>mongolica</i></b><b> Litv.</b>).
DOI: 10.6084/m9.figshare.28881749.v1
title: 3D-GloBFP: the first global three-dimensional building footprint dataset (PART Ⅱ, grid ID: 400-699)

description: The 3D Global Building Footprints (3D-GloBFP) dataset is the first global-scale building height dataset at the individual building footprint level for the year 2020, generated through the integration of multisource Earth Observation (EO) data and the extreme gradient boosting (XGBoost) model. The reliability and accuracy of 3D-GloBFP have been validated across 33 subregions, achieving R² values ranging from 0.66 to 0.96 and root-mean-square errors (RMSEs) between 1.9 m and 14.6 m. The dataset provides footprint-scale building height maps, divided into spatial grid-based tiles, each stored as an individual ShapeFile (.shp) containing estimated building heights (in meters) in attribute tables.
DOI: 10.6084/m9.figshare.28991807.v1
title: Whole-Slide CD8 IHC Data and Tissue Annotation Data (HALO)

description: The enclosed folders contain <b>CD8 IHC data for</b> <b>each</b> <b>whole-slide specimen</b> included in the present study. Cases are distinguished <i>numerically</i>, while redundant tissue blocks from a given case are distinguished <i>alphabetically</i>.Each whole-slide tissue specimen has a folder that contains CD8 IHC positive cell coordinates obtained from HALO (<b>Object_Data.csv</b>) and annotation data exported from HALO (<b>Annotations.annotations</b>). Annotation data can be read as XML files and interpreted in well-known text format.
DOI: 10.6084/m9.figshare.8986394.v1
title: pat 6 CT

description: Admire, Pinnacle, and Velocity denote structure sets after a deformable or rigid registration was applied to the MRI holding the CT as primary.
DOI: 10.6084/m9.figshare.16408392.v1
title: Classification of COVID-19, Normal and Pneumonia Based on Enhancement X-Ray Image and Squeeze Net Model

description: In this study, a primary dataset containing 21,909 X-ray images as shown in table 1[11-13], that is basic dataset consists of three classes (COVID-19, Normal and Pneumonia) each class has different numbers of images. The dataset used is available on the best and famous websites such as (GitHub, Eurorad, Figshare and Kaggle).
DOI: 10.6084/m9.figshare.26945247.v1
title: Additional file 5 of RFLP-kenzy: a new bioinformatics tool for in silico detection of key restriction enzyme in RFLP technique

description: Additional file 5
DOI: 10.6084/m9.figshare.27266430.v1
title: Consumption data

description: <b>Research on the impact of digital consumption on urban modernization with coordinated material and spiritual civilization</b>
DOI: 10.6084/m9.figshare.4754182.v1
title: Leopard camera trap dataset

description: This dataset contains the data and code used in the analysis for Williams, S.T., Williams, K.S., Lewis, B.P. and Hill, R.A. (2017) Population dynamics and threats to an apex predator outside protected areas: Implications for carnivore management. Royal Society Open Science. <br><br>Data were collected in the Soutpansberg Mountains, South Africa, between 2008 and 2016. Data and R code used for the analyses are included in this dataset. Please see the article for further details. If you have any questions contact Sam Williams (samual.t.williams@gmail.com).<br>The files provided in this data set are as follows:<br>Leopard camera trap datasetPublished on 16 Nov 2016 - 21:26 by Sam WilliamsData used in analysis for Williams et al. (2017) Population dynamics and threats to an apex predator outside protected areas: Implications for carnivore management. For full details see article. <br>Details of the files are as follows:<br>"SPACECAP input files.zip" contains SPACECAP input files for 24 surveys of leopard population density in the Soutpansberg Mountains, South Africa from 2012 to 2016. For each survey (for dates see article) the zip archive contains a - capture history file "capture_sXX.csv" - trap deployment file "deployment_sXX.csv" - potential home range centres file "HRC_s01.csv"<br>Details of coding used in SPACECAP input files. In input files ANIMAL_IDs and LOC_IDs must be represented as sequential numbers. - "ANIMAL_ID coding in capture files.csv" shows which ANIMAL_IDs correspond to which individual animals, and - "LOC_ID coding in deployment files.csv" shows which LOC_IDs correspond to which camera station numbers<br>Files used for analysis of SPACECAP results and demographic data: - Input files - "densityInclExcl2008.csv" - "heatmapLeopard.csv" - "individuals.csv" - "leopardTenure.csv"- "cameraTrapAnalysis.R" contains the R code used to analyse the data.- "cameraTrapAnalysis output.pdf" contains the output of the analysis.
DOI: 10.6084/m9.figshare.5821176.v1
title: entrainment3df_case3.tar.gzaa

description: DNS data for entrainment in forced turbulence case 3 - part a
DOI: 10.17605/osf.io/dtm73
title: Scientella survey data 2020-24

description: Scientella survey data from 2020-24. It includes responses from participants in consulting projects (2020-24) and mentorship matches (2020-22), and headquarter leaders (2024).
DOI: 10.17632/xbn3hj4mz7
title: Full Top Down NOx Fire Emission 

description: This dataset provides the full top-down nitrogen oxides (NOx = NO2 + NO) fire emission estimation at the temporal resolution of one day and spatial resolution of 1o degree in northeastern Asia (longitude: 110 E–145 E; latitude: 40 N–55 N) during 2012–2019. We developed this dataset based on fire radiative power density from the public dataset Global Fire Assimilation System (GFAS, https://apps.ecmwf.int/datasets/data/cams-gfas/) and NOx EC derived in our research article Fu et al. (2022) entitled “Investigating the impacts of satellite fire observation accuracy on the top-down nitrogen oxides emission estimation in northeastern Asia”. The data can be used as fundamental input data for climate and weather models, and can be applied for investigation of fire emission characteristic, fire emission feedback to climate, air quality, impacts on air pollution and human health effect. As a full top-down emission dataset, it can also serve as reference for other existing emission inventories that are mostly based on bottom-up approaches.
DOI: 10.6084/m9.figshare.22383657.v1
title: exhaustive search module from Internal cues for optimizing reproduction in a varying environment

description: Codes used for generating state diagrams analyzed in our study.
DOI: 10.6084/m9.figshare.24866958.v1
title: Data for "Potentially zoonotic pathogens and parasites in opportunistically sourced urban brown rats (Rattus norvegicus) within and around Helsinki, Finland, 2018-2023"

description: The data for the abovementioned manuscript. The files include data file (csv format) and readme data with metadata information.
DOI: 10.6084/m9.figshare.27956562.v1
title: RT-qPCR CQ data Generation of gastric proton pump <i>atp4a</i> knock-outs in <i>Astyanax mexicanus</i>. A fish model for insights into the mechanisms of acidification by oxynticopeptic cells

description: Cq values for genes analysed in the study
DOI: 10.6084/m9.figshare.28014863.v2
title: Impact of Regulation on Success of Initial Exchange Offerings.sav

description: This research seeks to uncover the relationship between regulation of Initial Exchange Offerings in the period 2019-2024 and return on investment (ROI).
DOI: 10.6084/m9.figshare.29143985.v1
title: SVM model for OSA detection

description: In this study, we developed a model to detect OSA patients based on bio-chemical testing result without polysomnography (PSG) data using support vector machines recursive feature elimination (SVM-RFE) algorithm. The results show that the model has a good performance.
DOI: 10.6084/m9.figshare.12456062.v1
title: Experiment 2.xlsx

description: Data of Experiment 2<br>
DOI: 10.6084/m9.figshare.12738674.v2
title: centrosomes

description: Spinning disk confocal microscopy of <i>Drosophila </i>early embryos expressing GFP-Centrosomin. Raw data to test pipeline.
DOI: 10.6084/m9.figshare.26502868.v1
title: Gastrocnemius medialis muscle ultrasonography dataset

description: Dataset from 8 human participants (4 women) of gastrocnemius medialis muscle ultrasonography, ankle dynamometry (angle + torque), and electromyography for a range of ankle plantar flexions contractions and passive ankle rotations.Accompanying manuscript is available here: https://www.biorxiv.org/content/10.1101/2024.08.07.607010v1Code to analyze this dataset is available here: https://github.com/timvanderzee/RUB_ultrasound_study
DOI: 10.6084/m9.figshare.28582007.v1
title: Supplementary Material for: Exosomal Specificity of MiR-15a-5p as marker of Activity, Renal Damage and Disease Flares in Systemic Lupus Erythematosus

description: Introduction: Little is known about the biofluid specificity of microRNAs (miRNAs) in systemic lupus erythematosus (SLE) and the biofluid influence on miRNA diagnosis and prognosis accuracy. Our aim was to analyze the effect of biofluid on miRNA expression and to identify a specific miRNA profile in plasma exosomes related to SLE activity, renal damage and disease flares over a 60-month follow-up period. Methods: Non-coding RNA sequencing analysis was used to determine miRNA in plasma and plasma exosomes in a discovery cohort of SLE patients and healthy subjects. Potential miRNAs were selected based on the differential expression between biofluids and were validated by quantitative polymerase chain reaction in a higher validation cohort. Results: From the small RNA-sequencing, the 25 miRNAs with the highest fold-change expression between biofluids were identified. Nine miRNAs were validated in a larger cohort (n=115, of whom 30 had nephritis), and were found to be increased in exosomal fraction and patient groups. Further analysis revealed a panel combining three miRNAs for lupus nephritis diagnosis (miR-101-3p, miR-144-5p and miR-15a-5p) gave an area under the curve that improves the readout of the single miRNAs (0.964, p&lt;0.0001). However, only miR-15a-5p had a strong discriminatory power of renal injury between patients (0.81, p&lt;0.0001). Finally, exosomal miR-15a-5p was associated with histological features, chronicity index and flares (odds ratio 4.24, p&lt;0.001), high levels being a strong independent predictor of 60-month follow-up flares (hazard ratio 4.24, p&lt;0.001). Conclusion: This novelty study demonstrated a biofluid exosome specificity of miRNA profile related to SLE with nephritis. Highlighting, exosomal miR-15a-5p levels with a strong association with proteinuria, renal histological features and high accuracy in the diagnosis of renal damage and detection of lupus flares. The detection of altered miRNAs levels in exosome-enriched fraction improved the diagnostic accuracy of renal damage in SLE.