cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26008/1912/bco-dmo.885319.1
title: Dissolved concentrations of nickel and copper from bottle samples collected on  Leg 1 (Seattle, WA to Hilo, HI) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1814) on R/V Roger Revelle from September to October 2018

description: This dataset contains dissolved concentrations of nickel (Ni) and copper (Cu) from bottle samples. The samples were collected during the U.S. GEOTRACES PMT cruise aboard the R/V Roger Revelle (RR1814 from September 18th to October 21st of 2018). The dataset also includes station number, date, time, latitude, longitude, event number, event description, sample number, depth, and data quality flag. The data from Leg 2 of this transect, RR1815, are available as a related dataset.
DOI: 10.26008/1912/bco-dmo.856200.1
title: Growth behaviors of diatom monoculture and diatom-bacteria co-cultures in the lab

description: This dataset represents the growth behaviors of diatom (Phaeodactylum tricornutum) monoculture and diatom-bacteria co-cultures in the lab.
DOI: 10.26008/1912/bco-dmo.885335.1
title: Dissolved concentrations of nickel and copper from bottle samples collected on Leg 2 (Hilo, HI to Papeete, French Polynesia) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1815) on R/V Roger Revelle from October to November 2018

description: This dataset contains dissolved concentrations of nickel (Ni) and copper (Cu) from bottle samples. The samples were collected during the U.S. GEOTRACES PMT cruise aboard the R/V Roger Revelle (RR1815 from October 24th to November 23rd of 2018). The dataset also includes station number, date, time, latitude, longitude, event number, event description, sample number, depth, and data quality flag. The data from Leg 1 of this transect, RR1814, are available as a related dataset.
DOI: 10.26008/1912/bco-dmo.700817.2
title: CTD-ODF profiles from GEOTRACES-Arctic Section cruise HLY1502, August to October 2015

description: These data are from the ODF CTD rosette operated on the GEOTRACES Arctic cruise (GN01) on USCGC Healy from August to October 2015.
DOI: 10.26008/1912/bco-dmo.821694.1
title: Small substrate hydrolysis of large volume (LV) samples aboard the R/V Endeavor EN638, May 2019 in the Northern Atlantic.

description: Small substrate hydrolysis of large volume (LV) samples aboard the R/V Endeavor EN638, May 2019 in the Northern Atlantic.
DOI: 10.26008/1912/bco-dmo.883989.1
title: Thorium-234 data from SalpPOOP cruise on the R/V Tangaroa to the Chatham Rise (subtropical and subantarctic waters) in October and November 2018

description: This dataset represents Thorium-234 data from samples in the water column at the Chatham Rise (subtropical and subantarctic waters) on the Tangaroa Cruise 1810 (aka SalpPOOP cruise) in October and November 2018.
DOI: 10.26008/1912/bco-dmo.717532.1
title: Measurements of peptidase and glucosidase activities in large volume mesocosm incubations on RV/Endeavor EN584, July 2016 (Patterns of activities project)

description: Measurements of peptidase and glucosidase activities in large volume mesocosm incubations on RV/Endeavor EN584, July 2016 (Patterns of activities project)
DOI: 10.26008/1912/bco-dmo.874274.1
title: Sequencing reads_(2bRAD) for Montastrea cavernosa, Siderastrea siderea, Agaricia agaricites and Porites astreoides from Florida Reefs

description: Sequencing reads_(2bRAD) for broadcasters Montastrea cavernosa and Siderastrea siderea sampled in the Lower Florida Keys and brooders Agaricia agaricites and Porites astreoides sampled in Florida coral reefs, from Dry Tortugas to Fowley Rocks.
DOI: 10.26008/1912/bco-dmo.875253.1
title: Montastrea cavernosa draft genome

description: Draft de novo genome assembly of M. cavernosa specimen collected from the West Bank of the Flower Garden Banks National Marine Sanctuary (27.88° N, 93.83° W) in 2014.
DOI: 10.26008/1912/bco-dmo.877780.1
title: Phenotypic plasticity in sand dollars in response to predators at the Friday Harbor Laboratories, WA, USA and in sea urchins from Southern Maine, USA from 2018 to 2019

description: This dataset describes phenotypic plasticity in sand dollars in response to predators at the Friday Harbor Laboratories, WA, USA and in sea urchins from Southern Maine, USA from 2018 to 2019.
DOI: 10.26008/1912/bco-dmo.884424.1
title: Bottle data from R/V Endeavor cruise EN665 in the Gulf of Maine, conducted April 7-12, 2021

description: This dataset is the bottle data for Cruise EN665 on the R/V Endeavor in the Gulf of Maine, conducted April 7-12, 2021. Included are the CTD rosette data along with nutrient and carbonate chemistry analyses (DIC, TA, and d13C-DIC). Data were collected and analyzed by PI Subhas.
DOI: 10.26008/1912/bco-dmo.883999.1
title: Juvenile oyster shell strength measurements from a dose response assay of chemical cues homarine and trigonelline conducted at Dauphin Island Sea Lab, Dauphin Island, AL in June - August 2021

description: These data include measurements of juvenile oyster shell strength from a dose response experiment conducted at Dauphin Island Sea Lab, Dauphin Island, AL in June - August of 2021.
Study description:

Homarine and trigonelline are two blue crab urine metabolites that cause juvenile oysters to strengthen their shells are a defensive response. We evaluated the dose dependency of this response with a dose-response experiment where homarine and trigonelline concentrations (of each individual chemical and a combination of the two) spanned 5 log half-steps. Juvenile oysters were exposed to chemicals for 8 weeks and their shell strength (N) was measured and standardized to the size of the animals (mm) as a proxy for understanding this defense.
DOI: 10.26008/1912/bco-dmo.884015.1
title: Juvenile oyster shell strength measurements from a dose response experiment with an array of blue crab urine concentrations conducted at Dauphin Island Sea Lab, Dauphin Island, AL in August - Oct 2022

description: These data include measurements of juvenile oyster shell strength from a dose response experiment of varying blue crab urine concentrations conducted at Dauphin Island Sea Lab, Dauphin Island, AL in August - Oct 2022.
Study description:

Metabolites from blue crab urine are known to cause shell strengthening in juvenile oysters as a defensive response. Previous studies have identified several bioactive molecules in urine that induce this response in oysters, but others have yet to be identified. In the current study, an array of concentrations of blue crab urine was used to treat oyster juveniles in order to assess the dose-dependency of this response. Oysters were exposed to urine treatments for 8 weeks and their shell strength (N) was measured and standardized to the size of the animals (mm) as a proxy for understanding this defense.
DOI: 10.26008/1912/bco-dmo.863421.1
title: Hourly temperature data from deployments between 2012 and 2018 from three of the Phoenix Islands

description: This dataset includes hourly temperature data from deployments of HOBO pendant temperature loggers at three of the Phoenix Islands (Kiribati: Kanton Island, Rawaki Island, and Nikumaroro Island) between 2012 and 2018. These data were published in Fox et al., 2021 (DOI: 10.1029/2021GRL094128).
DOI: 10.26008/1912/bco-dmo.878555.1
title: Kelp responses to temperature at 5-10 meters depth at three locations along the California coast from September to December 2016

description: Giant kelp (Macrocystis pyrifera) is a globally distributed foundation species with seasonal fluctuations in abundance in response to local nutrient levels, storm intensity, and ocean temperatures. In this study, we examined individual and population level responses of early life history stages (zoospore settlement, survival, and gametogenesis) to increased temperatures to determine the capacity for temperature-tolerant individuals to allow adaptation in a changing climate. We collected fertile M. pyrifera sporophyll blades from three sites along the California coast (Los Angeles, Santa Barbara, Monterey Bay) and induced zoospore release in the lab. Spores settled on microscope slides at three treatment temperatures (16º, 20º, 22º C), matured for 21 days, and were imaged weekly to determine settlement, survival, and maturation success. On average, individuals from all sites showed lower rates of settlement and maturation in response to increasing temperature.
DOI: 10.26008/1912/bco-dmo.883945.1
title: Juvenile oyster shell strength measurements from predator cue bioassay experiments with treatments including blue crab urine, homarine, and trigonelline conducted at Dauphin Island Sea Lab, Dauphin Island, AL between June and August of 2020

description: These data include measurements of juvenile oyster shell strength from predator cue bioassay experiments conducted at Dauphin Island Sea Lab, Dauphin Island, AL between June and August of 2020. Study description:

Homarine and trigonelline are two blue crab urine metabolites that cause mud crabs to seek refuge, but it is unknown whether these molecules influence other species. In the current study, homarine, trigonelline, and blue crab urine of animals fed conspecific and heterospecific diets were tested on juvenile oysters to ascertain if the same molecules known to alter mud crab behavior also affect oyster morphology. Juvenile oysters were exposed to chemicals for roughly 6 weeks and their shell strength (N) was measured and standardized to the size of the animals (mm) as a proxy for understanding this defense.
DOI: 10.26008/1912/bco-dmo.862410.1
title: Benthic cover quadrat observations and photos from the West coast of Leyte, the Philippines in the municipalities of Albuera and Bay Bay City, 2014-2017

description: Benthic cover quadrat observations and photos from the West coast of Leyte, the Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (11.07611, 124.87525), 2014-2017.
DOI: 10.26008/1912/bco-dmo.863410.1
title: Percent cover of benthic functional groups in the Phoenix Islands Protected Area (PIPA) from 2009, 2012, 2015, and 2018

description: This dataset includes percent cover of benthic functional groups in the Phoenix Islands Protected Area (PIPA). Percent cover of reef-building coral was quantified using photoquadrat transects conducted during 2009, 2012, 2015, and 2018 following standard Pacific coral reef monitoring protocols. Areas of study include: Phoenix Islands, Kiribati. Kanton Island (2.8 S, 171.6 W), Rawaki Island (3.7 S 170.7 W), Nikumaroro Island (4.7 S, 174.5 W), Orona Island (4.5 S, 172.2 W). These data were published in Fox et al., 2021 (DOI: 10.1029/2021GRL094128).
DOI: 10.26008/1912/bco-dmo.883700.1
title: Trait data captured from literature sources, field observations and measurements of sessile marine invertebrates from coastal sites across a geographic gradient spanning the sub-arctic to the tropics (Competition and Predation across Latitude)

description: Trait data captured from literature sources, field observations (2015-2018) and measurements of sessile marine invertebrates from 12 coastal sites across a geographic gradient spanning the sub-arctic to the tropics.  Invertebrates observed were from an experiment that manipulated predation for three and 12 months.
DOI: 10.15468/dl.hj5cgf
title: Occurrence Download

description: A dataset containing 72240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Rhododendron ponticum"
 ]
}

 The dataset includes 72240 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021469-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26008/1912/bco-dmo.862360.1
title: GPS drifters monitoring flow direction set off the coast of the West coast of Leyte, the Philippines in the municipalities of Albuera and Bay Bay City, May - June 2017

description: GPS drifters monitoring flow direction set off the coast of the West coast of Leyte, the Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (11.07611, 124.87525), May - June 2017.
DOI: 10.26008/1912/bco-dmo.862420.1
title: Tilt Current Meter deployed in Visca, Bay Bay City, Leyte, the Philippines, in June 2017

description: Tilt Current Meter deployed in Visca, Bay Bay City, Leyte, the Philippines, in June 2017.
DOI: 10.26008/1912/bco-dmo.807664.2
title: Biogeochemical data collected from porewater profiles within a shallow, sandy subterranean estuary (STE) in Virginia USA, from 2018 - 2019

description: These data were collected during 2018-2020 from a sandy subterranean estuary (STE) located in Gloucester Point, Virginia, USA. Several campaigns were conducted to collect porewater across seasonal, tidal, and spatial scales. Porewater samples were collected from dedicated piezometers at depths ranging from 10 centimeters to 300 centimeters deep in the STE.
DOI: 10.26008/1912/bco-dmo.883965.1
title: Compiled global dataset of PIC/POC and bSi concentrations measured by in situ pumps on multiple research cruises conducted from between 1973 and 2013

description: This dataset is a compiled global dataset of inorganic and organic carbon and biogenic silica concentrations measured by in situ pumps. We merged the Multiple Unit Large Volume in-situ Filtration System (MULVFS, Bishop et al. 1985) LVP PIC, POC, and bSi dataset published partially in Lam et al. 2011 with new data collected using McLane in-situ pumps equipped with two size-fractionating filters during the GEOTRACES program. The filter sizes generally consist of a 51 micrometer (μm) or 53μm pre-filter that collects large particles, followed by a 0.8μm or 1μm filter that collects smaller particles. We annotate large size fraction particles (&gt;53μm or &gt;51μm) as &quot;LSF&quot;, and small size fraction particles (1-53μm or 0.8-51μm) denoted &quot;SSF&quot; (small size fraction).
DOI: 10.26008/1912/bco-dmo.873083.2
title: Seagrass community composition surveys around artificial reefs in shallow coastal waters off of Abaco Island, The Bahamas

description: These data represent seagrass community composition surveys conducted from May to December 2021 around artificial reefs in shallow (less than 4 meters) coastal waters in The Bight of Old Robinson, off of Abaco Island, The Bahamas.
DOI: 10.26008/1912/bco-dmo.883570.1
title: Prevalence and intensity of oyster parasite species following a reef restoration experiment in Quonochontaug Pond, Rhode Island, USA from 2017-2020

description: Intraspecific variation in host susceptibility to individual parasite species is common, yet how these effects scale to mediate the structure of diverse parasite communities in nature is not as well understood. To address this knowledge gap, we tested how host genetic identity affects parasite communities on restored reefs seeded with juvenile oysters from different sources – a regional commercial hatchery or one of two wild progenitor lines. We assessed the prevalence and intensity of three micro- and two macro-parasite species for four years following restoration. Despite the spatial proximity of restored reefs, oyster source identity strongly predicted parasite community prevalence across all years, with sources varying in their relative susceptibility to different parasites. Oyster seed source also predicted reef-level parasite intensities across space and through time. Our results highlight that host intraspecific variation can shape parasite community structure in natural systems, and reinforce the importance of considering source identity and diversity in restoration design.
DOI: 10.26008/1912/bco-dmo.884057.1
title: Compilation of MULVFS size-fractionated POC, PIC, and bSi data from 17 cruises conducted between 1973 and 2005

description: This dataset reports 74 profiles of &lt;53um and &gt;53um concentrations of particulate organic carbon (POC), particulate inorganic carbon (PIC), and biogenic silica (bSi) collected and analyzed by James K.B. Bishop from 17 cruises using ship-powered (Multiple Unit) Large Volume In-situ Filtration (LVFS, later MULVFS) between 1973 and 2005. The dataset was compiled by Phoebe Lam.
DOI: 10.26008/1912/bco-dmo.862405.1
title: Fish and invertebrate transect survey dataset from the West coast of Leyte, the Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (11.07611, 124.87525), 2014-2017

description: Fish and invertebrate transect survey dataset from the West coast of Leyte, the Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (11.07611, 124.87525), 2014-2017.
DOI: 10.26008/1912/bco-dmo.862415.1
title: Temperature loggers (HOBO) placed in two locations off the coast of the West coast of Leyte, the Philippines , 2012-2019.

description: Temperature loggers (HOBO) placed in two locations (HOBO1: 10.74373, 124.78668, HOBO2: 10.74364, 124.78665) off the coast of the West coast of Leyte, the Philippines , 2012-2019.
DOI: 10.26008/1912/bco-dmo.862334.1
title: Clownfish photos from the West coast of Leyte, the Philippines in the municipalities of Albuera and Bay Bay City between 2015 and 2018

description: Clownfish photos taken in association with the clownfish log dataset  (https://www.bco-dmo.org/dataset/781917) from the West coast of Leyte, the Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (11.07611, 124.87525), 2015-2018.
DOI: 10.26008/1912/bco-dmo.879749.1
title: Seagrass metrics from from seagrass wasting disease mesocosm experiments conducted at Bodega Marine Laboratory from July-September 2015

description: This dataset includes seagrass metrics (diversity, biomass, growth, and wasting disease) from mesocosm experiments at Bodega Marine Laboratory in July-September 2015. Data were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite Labyrinthula zosterae.

These data were published in Schenck et al (2022).
DOI: 10.26008/1912/bco-dmo.883037.1
title: Temperature from seagrass wasting disease mesocosm experiments at Bodega Marine Laboratory in June-July 2015

description: This dataset includes seawater temperature measurements from mesocosms. Data were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite Labyrinthula zosterae.

These data were plotted in Schenck et al (2022) as Figure S1. And Bois et al., 2021 as Figure 1.
DOI: 10.26008/1912/bco-dmo.883055.1
title: Quantitative PCR cell count estimates from samples of DNA extracted from seagrass wasting disease parasite, Labyrinthula zosterae from wasting disease mesocosm experiments at Bodega Marine Laboratory in July-Sept of 2015

description: This data set includes quantitative PCR cell count estimates from samples of DNA extracted from seagrass wasting disease parasite, Labyrinthula zosterae, cultures of known cell concentrations run with and without DNA extracted from seagrass, Zostera marina, tissue samples to test for quantitative PCR signal inhibition. Seagrass tissue samples were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite L. zosterae.

These data were plotted in Schenck et al (2022) as Figure S6.
DOI: 10.26008/1912/bco-dmo.883070.1
title: Microbial taxa (amplicon sequence variant or ASV) statistical analyses for two seagrass genotypes from wasting disease mesocosm experiments at Bodega Marine Laboratory in July-Sept of 2015

description: This dataset includes outputs from statistical analyses of differences in microbial taxa (amplicon sequence variant or ASV) abundance among two groups of seagrass, Zostera marina, genotypes: those that showed reduced Labyrinthula zosterae parasites when warmed vs those that showed increased L. zosterae parasites when warmed; and two seawater temperature treatments: ambient or elevated +3.2oC. Data were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite L. zosterae.

These data were published in Schenck et al (2022).  Related sequence data from this experiment is accessible from the National Center for Biotechnology Information (NCBI) BioProject PRJNA716355.
DOI: 10.26008/1912/bco-dmo.814803.1
title: An ocean productivity database using consistent, globally-acquired data from in situ primary productivity based on 14C assimilation, and including ancillary data, 1985-2008

description: In situ primary productivity based on 14C assimilation and nutrients from samples collected by many research projects and on numerous cruises globally, 1985-2008.
DOI: 10.26008/1912/bco-dmo.839261.1
title: Spatial surveys of carbonate chemistry in Heron Reef, Great Barrier Reef, Australia

description: Seawater samples and environmental measurements were collected across the Heron Island coral reef during three reef-scale surveys in the morning and evening in October of 2015. Seawater samples were analyzed for dissolved inorganic carbon chemistry parameters. The study was designed to characterize the natural spatio-temporal variability of carbonate chemistry and environmental parameters across the entire coral reef system. The spatial surveys were complemented with autonomous sensors making high frequency measurements at three locations.
DOI: 10.26008/1912/bco-dmo.883171.1
title: Geochemistry and microscopy from incubation experiments of Chesapeake Bay sediments conducted at Horn Point Laboratory

description: These data were collected as part of a sediment incubation experiment, to investigate potential interactions between estuarine cable bacteria and their associated microbial community. Sediments were collected from the main channel of Chesapeake Bay at a mesohaline station that experiences seasonal oxygen depletion. The upper 10 centimeters (cm) of sediment was homogenized under anaerobic conditions, packed into polycarbonate core liners, and incubated in a dark climate-controlled room in aerated aquaria with artificial seawater (S=15.5; T=16 degrees Celsius). In a sub-set of core tubes, a 0.2 micron polycarbonate filter was held embedded at 0.5 cm depth, to block the downward growth of cable bacteria while allowing for porewater diffusion. The sediments (with and without embedded filters) were destructively sampled on 6 dates over 46 days, at which time nucleic acids, samples for microscopy, and samples for porewater geochemistry were collected. Microsensor profiling (oxygen (O2), pH, hydrogen sulfide (H2S)) was conducted alongside the destructive sampling. Associated nucleic acid data are available through NCBI Sequence Read Archive, under Bioproject PRJNA833464. Sediment porewaters were handled anaerobically, and were extracted by centrifugation followed by filtration (0.2 micron in-line filters). Geochemical data include porewater anions (sulfate and chloride) measured by ion chromatography, and ammonium and ferrous iron concentrations measured by standard colorimetric methods. Microscopy data include both counts of cable bacteria measured with FISH oligoprobe DSB706, and total single cell bacteria. The dataset was generated by Pinky Liau under the supervision of Dr. Sairah Malkin, Horn Point Laboratory, U. Maryland Center for Environmental Sciences.