cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/0twhma
title: Supplementary data - Envirotyping within a Multi-Environment Trial allowed identifying genetic determinants of winter oilseed rape yield stability.

description: This data set corresponds to the Supplementary Data as well as to the raw data (phenotype and genotype) attached to the original article 'Envirotyping within a Multi-Environment Trial allowed identifying genetic determinants of winter oilseed rape yield plasticity" This data set contains the four following files • Readme.docx • SuppData.xlsx • Phenotypes.xlsx • genotypes.csv
DOI: 10.57745/0jeuek
title: Experimental results for the paper "A fractal-based decomposition framework for continuous optimization"

description: This dataset contains three summaries. These were generated through continuous optimization of the CEC2020 and SOCO2011 benchmarks, as well as for a real-world application involving portfolio optimization with the SP500 dataset. The objective of these experiments is to analyze the performances and behaviors of a family of optimization algorithms, we named: 'fractal-based decomposition algorithms'. They hierarchically decompose a continuous search space using a self-similar and self-recurrent geometrical object. These algorithms can be described by five elementary building blocks: fractal, tree search, scoring, exploration and exploitation search components. To obtain these experimental results, we used 11 different algorithms instantiated with our Python package named 'Zellij'. Each of these algorithms has a unique combination of building blocks. Thus, one can analyze the sensitivity to the five components, dimensionality, and problem definition. The summaries are provided as CSV files. Each file contains 10 features (8 for summary_sp500.tab): the dimensionality of the benchmark function, the optimization algorithm, the benchmark function and basic statistics regarding the errors computed using the raw data (minimum, maximum, mean, standard error, median, first, and third quartile). Summaries are named according to the three experiments: summary_cec2020.tab, summary_socco2011.tab, summary_sp500.tab. Raw data is provided as a compressed ZIP file, named raw_data.zip, it contains three folders for the three experiments. Each experiment folder contains subfolders for each algorithm, dimension, and benchmark function. These are organized as follows: /experiment_{name}/{algorithm}/D{dimension}_{function}_save/outputs/all_evaluations.csv. A README.md file is provided for further technical details.
DOI: 10.57745/2xy0wa
title: Data associated to the paper: "Increased proportion of exclusion netting in the landscape affects pest damage in unnetted apple orchards"

description: This dataset is provided as supplementary material of the following article: Poinas I., Lavigne C., Dib H., Franck P., Delattre T., Said X., Gauffre B. (2025). Increased proportion of exclusion netting in the landscape affects pest damage in unnetted apple orchards. Journal of Applied Ecology. The study aimed to investigate the local and landscape effects of codling moth (Cydia pomonella) exclusion nets, as well as their interactions, on the target pest and two non-target pests (rosy apple aphid, Dysaphis plantaginea and woolly aphid, Eriosoma lanigerum). The dataset includes codling moth damage and larvae, and the presence-absence of the two aphids in 23 pairs of organic orchards, located in the Lower Durance Valley, which is the main apple and pear production area in southern France. We also provide information on the use of exclusion nets in the orchards and the surrounding landscape composition, specifically the percentage of orchards and the percentage of orchards with nets.
DOI: 10.57745/2ndeda
title: Do leaf lignin content or leaf-mass-to-area bias the estimation of intrinsic water use efficiency from leaf bulk δ13C? A test with seedlings from five oak species

description: Measurements were done on levaes from five oak species (Quercus robur L; Q. pubescens L.; Q. suber L.; Q. afares Pomel; Q. ilex L.) grown under common conditions. Measurements include gas exchange, carbon isotope composition, leaf mass per area, lignin and carbon content.
DOI: 10.57745/4mi9jn
title: Performance and Pedigree Data for Genetic Parameter Estimation of Spontaneous Liver Steatosis in Geese

description: This dataset is composed of two files used to estimate genetic parameters for traits measured in geese slaughtered after the induction of hyperphagia, in order to produce foie gras without force-feeding. 1. Pedigree file: Contains information on the animals, their sires, and dams, all renumbered from 1 to N. 2. Performance file: Contains phenotypic performance data, associated fixed effects (sex, hatching batch, slaughter date), and the animal identifier (linked to the pedigree file). The measured traits are: • BW0: Body weight at hatching (g) • BW14r: Body weight at 98 days (g) • BW26: Body weight at slaughter (182 days ± a few days) (g) • BWG1426: Weight gain between 14 weeks and slaughter (g) • LW: Liver weight (g) • RLW: Liver-to-body weight ratio at slaughter (%) • CW: Carcass weight (g) • AFW: Abdominal fat weight (g) • BMW: Breast muscle weight (g) • BSW: Breast skin weight (g) • TW: Thigh weight (g) • L, a, b: Colorimetry indices • LCAT: Categorical variable used to characterize hepatic steatosis
DOI: 10.15468/dl.6a6dxs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Nycticeinops macrocephalus (Hutterer & Peterhans, 2019)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028409-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15617113
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250608b Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250608b Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15617114
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250608b Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250608b Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.57745/4hlgu2
title: Identifying Choice Correspondences

description: This repository contains the data for an experiment. In the experiment, subjects could choose several options in a given choice set, which is called a choice correspondence.
DOI: 10.57745/7ricgx
title: MassiveFold data for target H1225 - T270

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/) - `CAPRI_assessment.csv` file contains the CAPRI assessment for the target (from https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz` is a multi-pdbs containing all the MassiveFold predictions for the target. It was used for the CAPRI scoring phase.
DOI: 10.57745/8kvz8z
title: From the biochemical pieces to the nutritional puzzle: using meta-reactions in teaching and research

description: An Excel tool to construct a complete pathway based on selected meta-reactions
DOI: 10.57745/5aha3q
title: Supporting data for "Rumen microbiota associated with feed efficiency in beef cattle are highly influenced by diet composition"

description: The aim was to examine the relationship between extreme RFI phenotypes and the taxonomic and functional profiles of the rumen microbiome in fattening Charolais bulls. Briefly, the study consisted of a cohort of 100 growing Charolais bulls (382±41 kg live weight and 259±42 days old at the start of the experiment) that were fed corn silage (CS)- or grass silage (GS)- based diets from two independent batches (experimental years 2019 [n = 50 bulls] and 2020 [n = 50 bulls]). Following a four-week period of adaptation to the facilities and their experimental diet, the feed efficiency of all bulls was evaluated over an 84-day period. In each batch (experimental year), the results of this feed efficiency test allowed for the classification of the bulls within each diet according to their RFI value, resulting in a total of 32 most extreme bulls (four for each batch and diet).
DOI: 10.57745/6wzdfk
title: Spectrofluorimetry analysis of lignins (SpectroFluo)

description: Lab-extracted organosolv lignins have been analysed using spectrofluorimetry. This dataset includes: - 1 file explaining the method; - 1 file summarizing the maximum emission intensity of lab-extracted organosolv lignins; - SpectroFluo spectra in .CSV format (one per lignin sample); - SpectroFluo spectra in .TIF format (one per lignin sample).
DOI: 10.57745/5kos6m
title: Oedometer Data Sulfat-Clay-Rock

description: Oedometer Test on two diffrent samples. Test 1: 1-15 days 1 MPa, 15-21 days 20 MPa, 21-30 days 1 MPa Test 2: 0-45,5 days 1 MPa
DOI: 10.57745/5ugqaf
title: Fiches de résultats des modèles hydrologiques de surface du projet Explore2 : E Fleuves côtiers de l'Artois-Picardie

description: Ensemble de fiche descriptives des résultats du projet Explore2 aux points de simulation pour la région hydrologique E Fleuves côtiers de l'Artois-Picardie Notice de lecture des fiches de résultats des modèles hydrologiques de surface Le projet Explore2 a produit une quantité inédite de données hydrologiques. Ainsi, des ensembles de projections hydrologiques ont été élaborés sur près de 4000 points de simulation répartis en France hexagonale. Dans un esprit de faciliter la diffusion des résultats et suite à des recommandations faites post-Explore2070, des fiches de synthèse viennent décrire les évolutions de statistiques de débit (descripteurs du régime hydrologique). Ces fiches sont toutes construites sur un schéma identique et privilégient des représentations graphiques. Elles se focalisent sur les résultats concernant les débits obtenus avec le scénario d’émission le plus émetteur (RCP8.5) et aux points disposant de projections issus d’au moins quatre modèles hydrologiques de surface. L’objectif visé des fiches est de donner à voir l’évolution de quelques variables clefs descriptives du régime hydrologique. Les valeurs numériques ne doivent pas être lues sur ces fiches, mais dans les fichiers de données brutes ou d’indicateurs pré-calculés mis à disposition, comme les fiches de synthèse, sur le portail « DRIAS les futurs de l’eau ». Ce document a pour objectif d’expliciter le contenu de ces fiches de synthèse des résultats.
DOI: 10.57745/8swzi6
title: Supplementary Tables for the Thesis of Baptiste Imbert

description: The dataset includes Supplementary Tables for the Thesis of Baptiste Imbert. The tables of two manuscripts are available: (1) Imbert, B et al. (2023). “Development of a Knowledge Graph Framework to Ease and Empower Translational Approaches in Plant Research: A Use-Case on Grain Legumes”. Published in: Frontiers in Artificial Intelligence 6. ISSN: 2624-8212. DOI: 10.3389/frai.2023.1191122. (2) Imbert, B et al. (in prep). "Genome-wide association study of frost tolerance in Vicia faba reveals syntenic loci in cool-season legumes and highlights relevant candidate genes"
DOI: 10.57745/8abkfg
title: Data set for the article : The microbiota and the host organism switch between cooperation and competition based on dietary iron levels.

description: We hypothesized that host-microbiota interactions fluctuate with dietary iron levels. We compared germ-free (GF) and conventional mice (SPF) fed iron-containing (65 mg/Kg) or iron-depleted (&lt;6 mg/Kg) diets. The efficacy of iron privation was validated by iron blood parameters. Ferritin and Dmt1, which represent cellular iron storage and transport respectively, were studied in tissues where they are abundant: the duodenum, liver and lung. When the mice were fed an iron-rich diet, the microbiota increased blood hemoglobin and hepcidin and the intestinal ferritin levels, suggesting that the microbiota helps iron storage. When iron was limiting, the microbiota inhibited the expression of the intestinal Dmt1 transporter, likely via the pathway triggered by Hif-2α. The microbiota assists the host in storing intestinal iron when it is abundant and competes with the host by inhibiting Dmt1 in conditions of iron scarcity. Comparison between duodenum, liver and lung indicates organ-specific responses to microbiota and iron availability. Iron depletion induced temporal changes in microbiota composition and activity, reduced α-diversity of microbiota, and led to Lactobacillaceae becoming particularly more abundant after 60 days of privation. By inoculating GF mice with a simplified bacterial mixture, we show that the iron-depleted host favors the gut fitness of Bifidobacterium longum.
DOI: 10.57745/8wgiq3
title: SeeDev

description: SeeDev is a set of article full-text excerpts manually annotated for training and evaluating Information Extraction systems. The documents were selected on the topic of plant seed development genetics. The annotations denote gene, proteins, plants, organs, and development stages, as well as relations between entities. SeeDev was proposed as a task in the BioNLP Shared Task 2016 and the BioNLP Open Shared Tasks 2019. It meets the BioNLP-OST standards of quality, originality and data formats. The tasks include binary and n-ary Relation Extraction.
DOI: 10.57745/at3mei
title: LCA_data_French_CS_baseline

description: This dataset contains the data related to the LCA of the baseline scenario for the French CS of FAIRCHAIN project: - Raw data; - LCI; - LCIA; - Possible extra data (sensitivity analysis, etc.). These data are used to produce LCA results described in Deliverable D5.2 of FAIRCHAIN.
DOI: 10.57745/aobh6l
title: IBIS - Dataset 1 - Genome, transcriptomics and targeted metabolomics of Lactobacillus delbrueckii subsp. delbrueckii CIRM-BIA865 in soy juice

description: This dataset comprises the complete and annotated genome of Lactobacillus delbrueckii subsp. delbrueckii CIRM-BIA865, sequences of expressed genes throughout the kinetic of growth and acidification in soy juice, quantification of targeted metabolites such as sugars, acids and volatil aroma coumpounds produced by the strain during fermentation of soy juice.
DOI: 10.57745/adfnmb
title: Caulifinder banks

description: This dataset gathers libraries used to run Caulifinder pipeline. Caulifinder is an automated tool for annotation of endogenous viral elements of the Caulimoviridae family. You can either choose each bank individually or pick all banks with an archive. Banks were built with data coming from : ICTV Teycheney et al. https://doi.org/10.1099/jgv.0.001497 ; Diop et al. DOI:10.1038/s41598-017-16399-x ; Geering et al. DOI: 10.1038/ncomms6269 ; Llorens, C al. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 : https://gydb.org/index.php?title=Main_Page
DOI: 10.57745/b69m2o
title: Retour d’expérience technique de la crue du 2 octobre 2020 dans la vallée de la Roya - Volet torrentiel

description: Ce dataset regroupe le rapport de retour d'expérience et ses annexes. Il a été rédigé par l'ONF-RTM, l'ONF-DRN et INRAE ETNA, appuyés de chercheurs ayant contribué à l'analyse. Il visait à documenter et analyser les crues torrentielles qui ont touché le bassin versant de la Roya pendant la tempête Alex. Ce retour d’expérience technique a été réalisé à la demande de la Direction Départementale des Territoires et de la Mer des Alpes-Maritimes ainsi que du Ministère de la Transition Ecologique, Direction Générale de la Pré-vention des Risques, Service des Risques Naturels et Hydrauliques, qui en a confié le pilotage et la rédaction à l’ONF-RTM en collaboration avec l’INRAE dans le cadre de la mission d’intérêt général « Prévention des risques naturels en montagne » réalisée par l’ONF au bénéfice du MTE.
DOI: 10.57745/beyqfq
title: 2015-2019 subset of rainfall, meteorology, discharge and sediment yield data from Draix-Bleone Observatory

description: This data set presents a 5-year subset of the full data base of Draix-Bleone Observatory over the period 2015-2019. It contains rainfall records at 8 stations, meteorological records at one station, and discharge, suspended sediment concentration and event-scale bedload volumes at 4 stations draining small badland catchments (up to 1km2).
DOI: 10.57745/bhyriu
title: Integrating Life Cycle Sustainability Assessment into Building Renovation Strategies

description: This dataset was created as part of the study of the Life Cycle Sustainability Assessment into building renovation strategies. This study presents a multi-criteria evaluation methodology for building renovation, integrating a holistic and prospective approach. The methodology incorporates thermal discomfort into the Life Cycle Sustainability Assessment, addressing a critical gap in existing approaches. This dataset will be linked to a journal paper (currently under review)
DOI: 10.57745/bbhyyx
title: Data for "Prey Switching and Natural Pest Control Potential of Carabid Communities over the Winter Wheat Cropping Season"

description: This repository includes carabids' molecular gut content data, taxonomy data and prey abundance data that were used for the statistical analysis in the article "Prey Switching and Natural Pest Control Potential of Carabid Communities over the Winter Wheat Cropping Season" from Sacco--Martret de Préville et al. 2024 in Insects. This repository includes: 1) Data_ARENA2: data obtained from the molecular gut content analysis of carabids by Multiplex PCR. 2) CarabidFunctionalTraits: taxonomy and functional traits of carabid species, obtained from Carabids.org and personal experiments. 3) Prey_Abundance: partial abundance data in fields of three tested prey during the molecular analysis (aphids, slugs, spiders). 4) ARENA_Rmarkdown: a document containing and commenting on the R script of the statistical analysis produced for the article.
DOI: 10.57745/aig7vc
title: Datasets of “the single-berry metabolomic clock paradigm reveals new stages and metabolic switches during grapevine berry development”

description: These files contain untargeted metabolomic data obtained from the experiment which aims to study the kinetics of metabolites during the development stages of Vitis vinifera cv Syrah berries, within the experimental vineyard Pierre Galet of Institut Agro Montpellier (France) in the years 2018 and 2019.
DOI: 10.57745/bizoot
title: A Classification of Subantarctic Kerguelen Island Vegetation

description: This document presents a classification of the vegetation of the Kerguelen Islands (subantarctic) designed for monitoring changes by remote sensing.
DOI: 10.57745/cnm2xj
title: PhenoFun: a phenological scale for fungi and fungus-like organisms

description: This excel document presents a phenological scoring scale for fungi and fungus-like taxa such as oomycetes. It has been developed for plant pathogenic fungi but can be used for all types of fungi. It is based on the BBCH scale. English and French versions of the PhenoFun scale are available as separate Excel files.
DOI: 10.57745/brwcxl
title: MassiveFold data for target H1215 - T248

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/) - `CAPRI_assessment.csv` file contains the CAPRI assessment for the target (from https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz` is a multi-pdbs containing all the MassiveFold predictions for the target. It was used for the CAPRI scoring phase.
DOI: 10.57745/elw696
title: Genotype dataset related to Jourdain et al. 2023

description: Genotype dataset related to Jourdain et al. 2023
DOI: 10.57745/divxvx
title: Compositional and technological properties measured in wheat flour of 150 wheats grown in France

description: Water absorption (WA) in wheat flour is a crucial quality parameter for optimizing bread-making processes and accurately estimating WA based on flour characteristics is essential for cereal industry. This dataset contains 28 compositional and technological properties associated with WA measured in wheat flour of 150 wheats grown in France.
DOI: 10.15468/dl.fyaubm
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Field Museum of Natural History (Zoology) Mammal Collection",
 "TaxonKey is Myodes rutilus (Pallas, 1779)"
 ]
}

 The dataset includes 56 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028410-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/dvmhss
title: Meleze d'Europe / Larix decidua

description: Fichier d'impression 3D d'anatomie du bois file for 3D printer : Wood anatomy
DOI: 10.57745/fkc6wp
title: Exploring the limits of Fe-rich chemistries in Na-based CaFe2O4-type postspinel oxides

description: Data set from Exploring the limits of Fe-rich chemistries in Na-based CaFe2O4 -type postspinel oxides. - Publication : Louise Benincasa, Mathieu Duttine, Céline Goujon, Murielle Legendre, Matthew Suchomel, et al.. Exploring the limits of Fe-rich chemistries in Na-based CaFe2O4 -type postspinel oxides. Inorganic Chemistry, 2024, 63 (22), pp.10373-10385. Hal-04601031 Dataset production context : This study of the NaFexRu2-xO4 system reveals a limited solid solution (1 ≤ x ≤ 1.3) adopting the CaFe2O4-type structure, in contrast to the NaFexTi2-xO4 system. Maintaining trivalent iron states for all compositions, detailed structural analysis reveals narrowed sodium ion diffusion channels with increasing Fe content, limiting the performance as positive electrode materials for sodium batteries. This fundamental insight guides the exploration of alternative NaM2O4-based positive electrode materials with a post spinel type structure.