cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qg3qbw
title: Occurrence Download

description: A dataset containing 6257 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sibbaldiopsis tridentata (Aiton) Rydb."
 ]
}

 The dataset includes 6257 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082516-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ebdxw
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico",
 "Country is Canada"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Hypochaeris glabra L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 689 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022954-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ua792y
title: Occurrence Download

description: A dataset containing 276 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Collabium Blume"
 ]
}

 The dataset includes 276 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0269958-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s88std
title: Occurrence Download

description: A dataset containing 8650 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron borealis (F.Vierh.) Simmons",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8650 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082515-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ppm54q
title: Occurrence Download

description: A dataset listing the 20 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.45206 21.3124,-89.55368 21.14599,-89.54269 20.98452,-89.11972 20.87678,-88.97141 21.02555,-88.94943 21.18441,-89.07028 21.2561,-89.19937 21.32776,-89.45206 21.3124))",
 "TaxonKey is Chiroptera",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 20 records were derived from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022955-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dp8fhv
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Prestoea acuminata (Willd.) H.E.Moore"
 ]
}

 The dataset includes 79 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238843-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tx3vh9
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Comparettia gentryi (Dodson) M.W.Chase & N.H.Williams"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153563-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.em7n3u
title: Occurrence Download

description: A dataset containing 7500 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Abundances and biological traits of the juveniles lamprey sampled in the survey of lamprey abundance Indice on the Oir river (France)"
 ]
}

 The dataset includes 7500 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005363-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iqkkmo
title: Occurrence Download

description: A dataset containing 307 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aldrichina grahami (Aldrich, 1930)"
 ]
}

 The dataset includes 307 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005469-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hekjq
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Flacourtia inermis Roxb."
 ]
}

 The dataset includes 89 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008261-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvkyur
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Lophornis ornatus",
 "HasCoordinate is TRUE",
 "Year 1970-2017"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038382-181108115102211/datasets/export for details.
DOI: 10.15468/dl.3kkcy9
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ixora novoguineensis Mouly & B.Bremer"
 ]
}

 The dataset includes 69 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008253-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avt0ff
title: Occurrence Download

description: A dataset containing 872 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-89.45206 21.3124,-89.55368 21.14599,-89.54269 20.98452,-89.11972 20.87678,-88.97141 21.02555,-88.94943 21.18441,-89.07028 21.2561,-89.19937 21.32776,-89.45206 21.3124))",
 "Geometry POLYGON((-89.64363 21.27983,-89.67659 21.02028,-89.59557 20.9063,-89.50493 20.83488,-89.35249 20.82253,-88.91441 20.81703,-88.63289 20.87334,-88.57521 21.11641,-88.80455 21.31279,-89.11079 21.36497,-89.64363 21.27983))"
 ]
 },
 "TaxonKey is Chiroptera",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 872 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022962-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mh69xv
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005360-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.er9eux
title: Occurrence Download

description: A dataset containing 2048311 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monarchidae"
 ]
}

 The dataset includes 2048311 records from 300 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012591-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffa844
title: Occurrence Download

description: A dataset containing 541 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus confertus Sw."
 ]
}

 The dataset includes 541 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153564-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8becj
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005379-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z96goh
title: Occurrence Download

description: A dataset containing 403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2016-2019",
 "HasCoordinate is true",
 "TaxonKey is Bouteloua gracilis (Kunth) Lag. ex Griffiths",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 403 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003695-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvhj4v
title: Occurrence Download

description: A dataset containing 2176145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-74.41699 4.12728,-70.90137 4.12728,-70.90137 6.70825,-74.41699 6.70825,-74.41699 4.12728))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2176145 records from 954 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012585-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqvg2h
title: Occurrence Download

description: A dataset containing 4137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2001",
 "Year is less than or equal to 2020",
 "Geometry POLYGON ((24.60134 63.16887, 24.60134 63.32276, 24.92305 63.32276, 24.92305 63.16887, 24.60134 63.16887))"
 ]
}

 The dataset includes 4137 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001432-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fezgrv
title: Occurrence Download

description: A dataset containing 133157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2001",
 "Year is less than or equal to 2020",
 "Geometry POLYGON ((19.87639 59.82747, 19.87639 59.95919, 20.25281 59.95919, 20.25281 59.82747, 19.87639 59.82747))"
 ]
}

 The dataset includes 133157 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001351-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.keb4w9
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Costa Rica",
 "DatasetKey is one of (Insecta of Costa Rica (INBio), International Barcode of Life project (iBOL))",
 "Geometry POLYGON((-84.29447 10.10497,-84.29447 9.92478,-84.11429 9.92478,-84.11429 10.10497,-84.29447 10.10497))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Notodontidae"
 ]
}

 The dataset includes 35 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001434-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28229645
title: Pseudomonas aeruginosa wgMLST scheme.

description: Backup of BioNumerics Pseudomonas aeruginosa wgMLST scheme.
DOI: 10.6084/m9.figshare.28229645.v1
title: Pseudomonas aeruginosa wgMLST scheme.

description: Backup of BioNumerics Pseudomonas aeruginosa wgMLST scheme.
DOI: 10.15468/dl.gthj53
title: Occurrence Download

description: A dataset containing 412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2001",
 "Year is less than or equal to 2020",
 "Geometry POLYGON ((-4.831222 37.42309, -4.831222 37.43598, -4.812216 37.43598, -4.812216 37.42309, -4.831222 37.42309))"
 ]
}

 The dataset includes 412 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001435-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6vm8bn
title: Occurrence Download

description: A dataset containing 3849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lachnaea L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3849 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001437-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17203/kdk633
title: Az ukrán menekültek ábrázolása a magyar médiában 2022-ben
DOI: 10.15468/dl.bj8g8f
title: Occurrence Download

description: A dataset containing 3408 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lagotis Gaertn.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3408 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001438-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14623310
title: Design and Analysis of a Prototype Fusion Energy System: Chiral Currents, Phononic Feedback, and Magnetic Monopoles

description: This study explores the feasibility of a prototype fusion energy system designed to generate 10 MW of sustainable power. The system integrates advanced mechanisms, including chiral currents, emergent magnetic monopoles, and phononic energy feedback, within a toroidal plasma confinement configuration enhanced by helical superconducting coils. The analysis incorporates magnetohydrodynamic (MHD) modeling, dynamic simulations of magnetic fields, and the impact of ultra-intense, ultra-short pulsed lasers optimized for minimal energy expenditure. Results demonstrate the prototype's ability to achieve higher economic efficiency compared to ITER TOKAMAK, with a benefit-to-cost ratio four times greater. These findings provide a pathway for practical implementation of next-generation fusion reactors.
DOI: 10.5281/zenodo.14623311
title: Design and Analysis of a Prototype Fusion Energy System: Chiral Currents, Phononic Feedback, and Magnetic Monopoles

description: This study explores the feasibility of a prototype fusion energy system designed to generate 10 MW of sustainable power. The system integrates advanced mechanisms, including chiral currents, emergent magnetic monopoles, and phononic energy feedback, within a toroidal plasma confinement configuration enhanced by helical superconducting coils. The analysis incorporates magnetohydrodynamic (MHD) modeling, dynamic simulations of magnetic fields, and the impact of ultra-intense, ultra-short pulsed lasers optimized for minimal energy expenditure. Results demonstrate the prototype's ability to achieve higher economic efficiency compared to ITER TOKAMAK, with a benefit-to-cost ratio four times greater. These findings provide a pathway for practical implementation of next-generation fusion reactors.
DOI: 10.15468/dl.vydts9
title: Occurrence Download

description: A dataset containing 36042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Kunzea Rchb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36042 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001436-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17203/kdk634
title: A gyermekek és családjaik helyzetének, igényeinek és szükségleteinek felmérése
DOI: 10.15468/dl.w94rcc
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2001",
 "Year is less than or equal to 2020",
 "Geometry POLYGON ((-4.162354 37.60655, -4.162354 37.62222, -4.143796 37.62222, -4.143796 37.60655, -4.162354 37.60655))"
 ]
}

 The dataset includes 32 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001440-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28229858
title: Staphylococcus aureus wgMLST scheme.

description: Backup of BioNumerics Staphylococcus aureus wgMLST scheme.
DOI: 10.6084/m9.figshare.28229858.v1
title: Staphylococcus aureus wgMLST scheme.

description: Backup of BioNumerics Staphylococcus aureus wgMLST scheme.
DOI: 10.17203/kdk635
title: A fenntarthatóság feltételei az EFOP 1.4.2 Gyerekesély program hat járásában
DOI: 10.5281/zenodo.14720107
title: Foundation-Peptidomimetics-Language-Model

description: This dataset aim to advance the systematic study and design of peptidomimetics by leveraging non-canonical elements. We extracted over 17,000 non-canonical elements, including non-canonical amino acids and terminal modifications, from peptidomimetics available in the ChEMBL database. These elements have been standardized to facilitate their representation in a sequence-like format, providing a foundation for consistent analysis and design.

We developed a foundational language model, GPepT, trained on peptides and peptidomimetics. This model, hosted on HuggingFace (https://huggingface.co/Playingyoyo/GPepT), allows users to design novel peptidomimetics efficiently. The combination of the standardized dataset and GPepT makes it easier to explore, analyze, and generate new peptidomimetic sequences with enhanced scientific precision.

Files Included:



dictionary.txtA comprehensive dictionary of elements (amino acids and terminal modifications) with the following features:



standardized IDs (e.g., canonical amino acids follow the one-letter code; non-canonical amino acids start with "X", terminal modifications with "Z").

SMILES representation

tautomeric SMILES

peptide bond sites

functional groups

some physiochemical properties

frequency



datasetP.txtA dataset of peptidomimetics extracted from ChEMBL, encoded using the standardized vocabulary. Contains:



ChEMBL ID

sequence representation

SMILES representation

length

Some physiochemical properties



peptidomimetics_wetlab.txtSequences (Pep1~pep5) generated by GPepT that were used for experimental validation.

Pep1_activity.txtAntimicrobial activity of Pep1 against E. coli.
DOI: 10.5281/zenodo.14720108
title: Foundation-Peptidomimetics-Language-Model

description: This dataset aim to advance the systematic study and design of peptidomimetics by leveraging non-canonical elements. We extracted over 17,000 non-canonical elements, including non-canonical amino acids and terminal modifications, from peptidomimetics available in the ChEMBL database. These elements have been standardized to facilitate their representation in a sequence-like format, providing a foundation for consistent analysis and design.

We developed a foundational language model, GPepT, trained on peptides and peptidomimetics. This model, hosted on HuggingFace (https://huggingface.co/Playingyoyo/GPepT), allows users to design novel peptidomimetics efficiently. The combination of the standardized dataset and GPepT makes it easier to explore, analyze, and generate new peptidomimetic sequences with enhanced scientific precision.

Files Included:



dictionary.txtA comprehensive dictionary of elements (amino acids and terminal modifications) with the following features:



standardized IDs (e.g., canonical amino acids follow the one-letter code; non-canonical amino acids start with "X", terminal modifications with "Z").

SMILES representation

tautomeric SMILES

peptide bond sites

functional groups

some physiochemical properties

frequency



datasetP.txtA dataset of peptidomimetics extracted from ChEMBL, encoded using the standardized vocabulary. Contains:



ChEMBL ID

sequence representation

SMILES representation

length

Some physiochemical properties



peptidomimetics_wetlab.txtSequences (Pep1~pep5) generated by GPepT that were used for experimental validation.

Pep1_activity.txtAntimicrobial activity of Pep1 against E. coli.
DOI: 10.5281/zenodo.12522505
title: Code and Data for Li et al. Characterizing the Speed of Chemical Cycling in the Atmosphere

description: This Zenodo archive contains the code and data used in the manuscript "Characterizing the Speed of Chemical Cycling in the Atmosphere"
DOI: 10.5281/zenodo.12522506
title: Code and Data for Li et al. Characterizing the Speed of Chemical Cycling in the Atmosphere

description: This Zenodo archive contains the code and data used in the manuscript "Characterizing the Speed of Chemical Cycling in the Atmosphere"
DOI: 10.15468/dl.7bjsdq
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Observation.org, Nature data from around the World, iNaturalist Research-grade Observations)",
 "GadmGid is DEU.15_1",
 "TaxonKey is Trachemys scripta (Thunberg In Schoepff, 1792)",
 "Year 2019-2024"
 ]
}

 The dataset includes 66 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001443-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s43jhu
title: Occurrence Download

description: A dataset containing 184621 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 184621 records from 717 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001424-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.