cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4592539
title: Keast ApiNATOMY model of bladder innervation

description: This digital record documents the ApiNATOMY representation of neural circuits in the central and peripheral nervous system innervating the urinary bladder and urethra. ApiNATOMY is a set of tools that produces simple, consistent anatomy schematics overlaid with ontological information. These tools are used to build routing and connectivity graphs (or wiring diagrams). This record contains a docs folder, a source folder, and a README text file. The Docs folder contains 2 PDF documents, with a schematic image of the ApiNATOMY model and a slide presentation documenting the anatomical structures each neuron population travels through in the schematic image. The Source folder contains the ApiNATOMY representation of the model in JSON and .xlsx formats. Lastly, the README.md document includes a brief description, keywords, and reference publications to construct the knowledge within the model. Please note, the focus of SPARC is on peripheral connectivity of the ANS and its main points of interaction with the CNS. Therefore, any CNS circuitry represented is not comprehensive unless otherwise specified.
description: PMID:1358408 PMID:1619047 PMID:1726105 PMID:1765622 PMID:2713886 PMID:2891149 PMID:3225349 PMID:3558884 PMID:3722467 PMID:4700666 PMID:6736301 PMID:7174880 PMID:7636036 PMID:7644029 PMID:8786273 PMID:8923445 PMID:9421141 PMID:9442414 PMID:10494620 PMID:11382385 PMID:11748568 PMID:12811806 PMID:20484700 PMID:30704972
description: {"references": ["Vera PL, Nadelhaft I. Afferent and sympathetic innervation of the dome and the base of the urinary bladder of the female rat. Brain Res Bull. 1992 Nov;29(5):651-8. doi: 10.1016/0361-9230(92)90134-j. PMID: 1358408."]}
DOI: 10.5281/zenodo.6369432
title: SPARC Connectivity Knowledge base of the Autonomic Nervous System

description: The SPARC Knowledge base of the Automatic Nervous System (SCKAN) is an integrated graph database composed of three parts: the SPARC dataset metadata graph, ApiNATOMY and NPO models of connectivity, and the larger ontology used by SPARC which is a combination of the NIF-Ontology and community ontologies. The fastest way to get querying is to follow the instructions in the SCKAN readme file. For background information please see https://scicrunch.org/sawg/about/SCKAN and the SPARC portal resource page about SCKAN. This release contains the raw and compiled data for SCKAN. The release-*.zip contains raw data inputs along with the Blazegraph journal file, the sparc-sckan-graph-*.zip contains the SciGraph database, and sckan-data-*.tar.gz is a Docker image that contains the Blazegraph journal file and the SciGraph database along with the configuration files for running each of the servers. The image is intended to be used as a data volume with another Docker container that runs the SciGraph and Blazegraph server software. The Docker image containing this data is available live and is likely easier to use than the archived image included in this release. See the SCKAN readme file for the most up-to-date instructions. We would like to thank the members of the SAWG (SPARC Anatomy Working Group, RRID:SCR_018709) for their work on the various connectivity models included in this release. This work was funded by the NIH Common Fund under 3OT2OD030541-01S1.
DOI: 10.5281/zenodo.14042929
title: SPARC Connectivity Knowledge base of the Autonomic Nervous System

description: The SPARC Knowledge base of the Autonomic Nervous System (SCKAN) is an integrated graph database composed of three parts: the SPARC dataset metadata graph, ApiNATOMY and NPO models of connectivity, and the larger ontology used  by SPARC which is a combination of the NIF-Ontology and community ontologies.

The fastest way to get querying is to follow the instructions in the SCKAN readme file.

For background information please see https://scicrunch.org/sawg/about/SCKAN and the SPARC portal resource page about SCKAN.

This release contains the raw and compiled data for SCKAN. The release-*.zip contains raw data inputs along with the Blazegraph journal file, the sparc-sckan-graph-*.zip contains the SciGraph database, and sckan-data-*.tar.gz is a Docker image that contains the Blazegraph journal file and the SciGraph database along with the configuration files for running each of the servers. The image is intended  to be used as a data volume with another Docker container that runs the SciGraph and Blazegraph server software.

The Docker image containing this data is available live and is likely easier to use than the archived image included in this release. See the SCKAN readme file for the most up-to-date instructions.

We would like to thank the members of the SAWG (SPARC Anatomy Working Group, RRID:SCR_018709) for their work on the various connectivity models included in this release.

This work was funded by the NIH Common Fund under 3OT2OD030541-01S1.
DOI: 10.5281/zenodo.5337441
title: SPARC Connectivity Knowledge base of the Autonomic Nervous System

description: The SPARC Knowledge base of the Autonomic Nervous System (SCKAN) is an integrated graph database composed of three parts: the SPARC dataset metadata graph, ApiNATOMY and NPO models of connectivity, and the larger ontology used  by SPARC which is a combination of the NIF-Ontology and community ontologies.

The fastest way to get querying is to follow the instructions in the SCKAN readme file.

For background information please see https://scicrunch.org/sawg/about/SCKAN and the SPARC portal resource page about SCKAN.

This release contains the raw and compiled data for SCKAN. The release-*.zip contains raw data inputs along with the Blazegraph journal file, the sparc-sckan-graph-*.zip contains the SciGraph database, and sckan-data-*.tar.gz is a Docker image that contains the Blazegraph journal file and the SciGraph database along with the configuration files for running each of the servers. The image is intended  to be used as a data volume with another Docker container that runs the SciGraph and Blazegraph server software.

The Docker image containing this data is available live and is likely easier to use than the archived image included in this release. See the SCKAN readme file for the most up-to-date instructions.

We would like to thank the members of the SAWG (SPARC Anatomy Working Group, RRID:SCR_018709) for their work on the various connectivity models included in this release.

This work was funded by the NIH Common Fund under 3OT2OD030541-01S1.
DOI: 10.5281/zenodo.5337442
title: SPARC Connectivity Knowledge base of the Autonomic Nervous System

description: The SPARC Knowledge base of the Automatic Nervous System (SCKAN) is an integrated graph database composed of three parts: the SPARC dataset metadata graph, ApiNATOMY and NPO models of connectivity, and the larger ontology used by SPARC which is a combination of the NIF-Ontology and community ontologies. The fastest way to get querying is to follow the instructions in the SCKAN readme file. This release contains the raw and compiled data for SCKAN. The release-*.zip contains raw data inputs along with the Blazegraph journal file, the sparc-sckan-graph-*.zip contains the SciGraph database, and sckan-data-*.tar.gz is a Docker image that contains the Blazegraph journal file and the SciGraph database along with the configuration files for running each of the servers. The image is intended to be used as a data volume with another Docker container that runs the SciGraph and Blazegraph server software. The Docker image containing this data is available live and is likely easier to use than the archived image included in this release. See the SCKAN readme file for the most up-to-date instructions. We would like to thank the members of the SAWG (SPARC Anatomy Working Group, RRID:SCR_018709) for their work on the various connectivity models included in this release. This work was funded by the NIH Common Fund under 3OT2OD030541-01S1.
DOI: 10.15468/dl.xxh4tj
title: Occurrence Download

description: A dataset containing 28423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "GadmGid is one of (CHN, TWN.7_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Reptilia",
 "Year 1950-2022"
 ]
}

 The dataset includes 28423 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135562-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48623/aperta.274061
title: Dataset And Code For The Article: Predictive Uncertainty In State-Estimation Drives Active Sensing

description: Animals use active sensing movements to shape the spatiotemporal characteristics of sensory signals to better perceive their environment under varying conditions. However, the underlying mechanisms governing the generation of active sensing movements are not known. To address this, we investigated the role of active sensing movements in the refuge tracking behavior of <em>Eigenmannia virescens</em>, a species of weakly electric fish. These fish track the longitudinal movements of a refuge in which they hide by swimming back and forth in a single linear dimension. During refuge tracking, <em>Eigenmannia</em> exhibits stereotyped whole-body oscillations when the quality of the sensory signals degrades. We developed a closed-loop feedback control model to examine the role of these ancillary movements on the task performance. Our modeling suggests that fish may use active sensing to minimize predictive uncertainty in state estimation during refuge tracking. The proposed model generates simulated fish trajectories that are statistically indistinguishable from that of the actual fish, unlike the open-loop noise generator and stochastic resonance generator models in the literature. These findings reveal the significance of closed-loop control in active sensing behavior, offering new insights into the underlying mechanisms of dynamic sensory modulation.
description: This repository contains the MATLAB code and dataset used in the study:
Karagoz, O. K., Kilic, A., Aydin, E. Y., Ankarali, M. M., & Uyanik, I. "Predictive Uncertainty in State-Estimation Drives Active Sensing Behavior."
DOI: 10.15468/dl.rbf3t5
title: Occurrence Download

description: A dataset listing the 77 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru",
 "TaxonKey is Carex L."
 ]
}

 The dataset's 77 records were derived from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025701-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erj6z2
title: Occurrence Download

description: A dataset containing 186750 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((30.21151 45.58781,27.48859 45.69979,25.88688 44.56993,23.72457 44.34127,22.36311 45.47561,20.52114 46.4222,18.51899 46.25633,16.67702 47.02608,14.59479 46.14547,12.91299 45.47561,13.95411 44.34127,16.67702 42.42071,18.43891 41.70726,18.83934 40.07276,19.88045 38.20953,20.52114 35.97396,23.16397 33.67324,28.93014 34.53529,26.92799 36.74786,25.88688 38.0205,25.56654 39.58072,26.20722 40.56126,26.92799 41.88637,28.12928 41.94597,29.09031 43.00912,29.65091 44.16919,30.21151 45.58781))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Nymphalidae, Papilionidae, Riodinidae, Hesperiidae, Pieridae, Lycaenidae)"
 ]
}

 The dataset includes 186750 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025634-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.snpmx4
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Acacia decurrens Willd."
 ]
}

 The dataset includes 22 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025739-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abeahq
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea raphanina subsp. saxatilis (K.Koch) Greuter"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025740-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2kb8y4
title: CCDC 2363376: Experimental Crystal Structure Determination

description: Related Article: Kristine L. Konkol, Wyatt D. Wilcox, Seth C. Rasmussen|2024|Dalton Trans.|53|16685|doi:10.1039/D4DT02495H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kb8z5
title: CCDC 2363377: Experimental Crystal Structure Determination

description: Related Article: Kristine L. Konkol, Wyatt D. Wilcox, Seth C. Rasmussen|2024|Dalton Trans.|53|16685|doi:10.1039/D4DT02495H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kdbfr
title: CCDC 2365344: Experimental Crystal Structure Determination

description: Related Article: Periyasamy Angamuthu Praveen, Thangavel Kanagasekaran, Chaoyan Ma, Masahiro Terada, Tienan Jin, Yusuke Wakabayashi, Hidekazu Shimotani|2024|J.Mater.Chem.C|12|15995|doi:10.1039/D4TC03149K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kh3v1
title: CCDC 2368023: Experimental Crystal Structure Determination

description: Related Article: Li-Ping Na, Xun Li, Hai-Wei Zhang, Ya-Xue Su, Chen Chen, Wen-Kui Dong|2025|J.Mol.Struct.|1322|140344|doi:10.1016/j.molstruc.2024.140344
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kh3w2
title: CCDC 2368024: Experimental Crystal Structure Determination

description: Related Article: Li-Ping Na, Xun Li, Hai-Wei Zhang, Ya-Xue Su, Chen Chen, Wen-Kui Dong|2025|J.Mol.Struct.|1322|140344|doi:10.1016/j.molstruc.2024.140344
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2khqg8
title: CCDC 2368600: Experimental Crystal Structure Determination

description: Related Article: Ryoji Tanaka|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2khv53
title: CCDC 2368715: Experimental Crystal Structure Determination

description: Related Article: Veerapandian  Vallapandian, Rajaboopathi Mani, Alagiri Mani*|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2khvb8
title: CCDC 2368720: Experimental Crystal Structure Determination

description: Related Article: Shida Gong|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kj7zb
title: CCDC 2369112: Experimental Crystal Structure Determination

description: Related Article: TCAcycle TCAcycly|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kj80d
title: CCDC 2369113: Experimental Crystal Structure Determination

description: Related Article: TCAcycle TCAcycly|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kj81f
title: CCDC 2369114: Experimental Crystal Structure Determination

description: Related Article: TCAcycle TCAcycly|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kj82g
title: CCDC 2369115: Experimental Crystal Structure Determination

description: Related Article: TCAcycle TCAcycly|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kk8t7
title: CCDC 2370099: Experimental Crystal Structure Determination

description: Related Article: Busra Kaya, Henry Smith, Yanbing Chen, Mahan Gholam Azad, Tiffany M. Russell, Vera Richardson, Mahendiran Dharmasivam, Des R. Richardson|2024|Inorg.Chem.|63|20840|doi:10.1021/acs.inorgchem.4c03642
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kkhj5
title: CCDC 2370307: Experimental Crystal Structure Determination

description: Related Article: Peng Shuang|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kkhk6
title: CCDC 2370308: Experimental Crystal Structure Determination

description: Related Article: Peng Shuang|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kkhl7
title: CCDC 2370309: Experimental Crystal Structure Determination

description: Related Article: Peng Shuang|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kkhm8
title: CCDC 2370310: Experimental Crystal Structure Determination

description: Related Article: Peng Shuang|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kkjh5
title: CCDC 2370337: Experimental Crystal Structure Determination

description: Related Article: Maureen  Gumbo|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kkllb
title: CCDC 2370402: Experimental Crystal Structure Determination

description: Related Article: zhiruo li|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.27612963.v4
title: Data for the paper of "Uncovering natural and anthropogenic impacts on delta development"

description: Proxy data of core DA from the Pearl River Delta