cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7369079.v1
title: Additional file 3: of Cell-free DNA profiling of metastatic prostate cancer reveals microsatellite instability, structural rearrangements and clonal hematopoiesis

description: Table S2. Summary of bioinformatic tools and settings. (XLSX 13 kb)
DOI: 10.7284/135443
title: Gyrocompass data collected during research cruise OC1905C using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369064
title: Additional file 2: of Cell-free DNA profiling of metastatic prostate cancer reveals microsatellite instability, structural rearrangements and clonal hematopoiesis

description: Table S1. Detailed overview of the capture designs and targeted regions. (XLSX 974 kb)
DOI: 10.7284/135442
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1905C using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369064.v1
title: Additional file 2: of Cell-free DNA profiling of metastatic prostate cancer reveals microsatellite instability, structural rearrangements and clonal hematopoiesis

description: Table S1. Detailed overview of the capture designs and targeted regions. (XLSX 974 kb)
DOI: 10.7284/135454
title: Radiometer data collected during research cruise OC1905C using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135449
title: Singlebeam Echosounder data collected during research cruise OC1905C using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369040
title: Additional file 8: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: PMWS biomarker genes annotation and performance of an alternative clinical disease signature. A Gene ontology (GO) terms overrepresentation test of PMWS biomarker genes. B Nearest Template Prediction of test set samples using an alternative clincal gene signature based on the RNMI metric C and similarly, of the experimental subclinical infection samples at 29dpi. (ZIP 121Â kb)
DOI: 10.7284/135445
title: Water Temperature data collected during research cruise OC1905C using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369040.v1
title: Additional file 8: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: PMWS biomarker genes annotation and performance of an alternative clinical disease signature. A Gene ontology (GO) terms overrepresentation test of PMWS biomarker genes. B Nearest Template Prediction of test set samples using an alternative clincal gene signature based on the RNMI metric C and similarly, of the experimental subclinical infection samples at 29dpi. (ZIP 121Â kb)
DOI: 10.7284/135451
title: Water Temperature data collected during research cruise OC1905C using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369025
title: Additional file 7: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: Complete list of PCV2 disease signature biomarker genes. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.7369025.v1
title: Additional file 7: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: Complete list of PCV2 disease signature biomarker genes. (XLSX 15Â kb)
DOI: 10.7284/135450
title: Timeserver data collected during research cruise OC1905C using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135472
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1907A using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7369007
title: Additional file 7: of Parallel identification of novel antimicrobial peptide sequences from multiple anuran species by targeted DNA sequencing

description: BLASTp output for novel identified putative AMP sequences. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.7369007.v1
title: Additional file 7: of Parallel identification of novel antimicrobial peptide sequences from multiple anuran species by targeted DNA sequencing

description: BLASTp output for novel identified putative AMP sequences. (XLSX 47 kb)
DOI: 10.7284/135480
title: Anemometer data collected during research cruise OC1907A using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135475
title: Fluorometer data collected during research cruise OC1907A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7368986
title: Additional file 5: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: PorSignDB signatures as entrez symbols, in gmt format. (GMT 305Â kb)
DOI: 10.6084/m9.figshare.7368986.v1
title: Additional file 5: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: PorSignDB signatures as entrez symbols, in gmt format. (GMT 305Â kb)
DOI: 10.7284/135476
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1907A using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135479
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1907A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7368974
title: Additional file 4: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: PorSignDB signatures as HUGO gene symbols, in gmt format. (GMT 344Â kb)
DOI: 10.6084/m9.figshare.7368974.v1
title: Additional file 4: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: PorSignDB signatures as HUGO gene symbols, in gmt format. (GMT 344Â kb)
DOI: 10.7284/135471
title: Gyrocompass data collected during research cruise OC1907A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135470
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1907A using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135473
title: Water Temperature data collected during research cruise OC1907A using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7368944
title: Additional file 3: of Parallel identification of novel antimicrobial peptide sequences from multiple anuran species by targeted DNA sequencing

description: List of signal peptides used for transcriptome screening. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.7368935
title: Additional file 1: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: GO biological process term enrichment of every gene set in PorSignDB. (XLSX 662Â kb)
DOI: 10.6084/m9.figshare.7368944.v1
title: Additional file 3: of Parallel identification of novel antimicrobial peptide sequences from multiple anuran species by targeted DNA sequencing

description: List of signal peptides used for transcriptome screening. (XLSX 46 kb)
DOI: 10.7284/135478
title: Water Temperature data collected during research cruise OC1907A using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7368935.v1
title: Additional file 1: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: GO biological process term enrichment of every gene set in PorSignDB. (XLSX 662Â kb)
DOI: 10.7284/135477
title: Timeserver data collected during research cruise OC1907A using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135496
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1907X using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7368917
title: Additional file 12: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: PorSignDB annotation source file. (XLSX 25Â kb)
DOI: 10.7284/135505
title: Anemometer data collected during research cruise OC1907X using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7368917.v1
title: Additional file 12: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: PorSignDB annotation source file. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.7368896
title: Additional file 1: of Searching Embase and MEDLINE by using only major descriptors or title and abstract fields: a prospective exploratory study

description: Supplementary material. (XLSX 13 kb)
DOI: 10.7284/135499
title: Fluorometer data collected during research cruise OC1907X using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7368893
title: Additional file 10: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: ImmuneSigDB analysis of the PMWS field study dataset. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.7368893.v1
title: Additional file 10: of Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

description: ImmuneSigDB analysis of the PMWS field study dataset. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.7368896.v1
title: Additional file 1: of Searching Embase and MEDLINE by using only major descriptors or title and abstract fields: a prospective exploratory study

description: Supplementary material. (XLSX 13 kb)
DOI: 10.7284/135500
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1907X using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135504
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1907X using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135495
title: Gyrocompass data collected during research cruise OC1907X using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135494
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1907X using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135501
title: Singlebeam Echosounder data collected during research cruise OC1907X using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7368806
title: Hydrogeological responses in tropical mountainous springs

description: This study presents a hydrogeochemical analysis of spring responses (2013–2017) in the tropical mountainous region of the Central Valley of Costa Rica. The isotopic distribution of <i>δ</i><sup>18</sup>O and <i>δ</i><sup>2</sup>H in rainfall resulted in a highly significant meteoric water line: <i>δ</i><sup>2</sup>H = 7.93·<i>δ</i><sup>18</sup>O + 10.37 (<i>r<sup>2 </sup> </i>= 0.97). Rainfall isotopic composition exhibited a strong amount-dependent seasonality. The isotopic variation (<i>δ</i><sup>18</sup>O) of two springs within the Barva aquifer was simulated using the FlowPC program to determine mean transit times (MTTs). Exponential-piston and dispersion distribution functions provided the best-fit to the observed isotopic composition at Flores and Sacramento springs, respectively. MTTs corresponded to 1.23 ± 0.03 (Sacramento) and 1.42 ± 0.04 (Flores) years. The greater MTT was represented by a homogeneous geochemical composition at Flores, whereas the smaller MTT at Sacramento is reflected in a more variable geochemical response. The results may be used to enhance modelling efforts in central Costa Rica, whereby scarcity of long-term data limits water resources management plans.
DOI: 10.7284/135497
title: Water Temperature data collected during research cruise OC1907X using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7368806.v1
title: Hydrogeological responses in tropical mountainous springs

description: This study presents a hydrogeochemical analysis of spring responses (2013–2017) in the tropical mountainous region of the Central Valley of Costa Rica. The isotopic distribution of <i>δ</i><sup>18</sup>O and <i>δ</i><sup>2</sup>H in rainfall resulted in a highly significant meteoric water line: <i>δ</i><sup>2</sup>H = 7.93·<i>δ</i><sup>18</sup>O + 10.37 (<i>r<sup>2 </sup> </i>= 0.97). Rainfall isotopic composition exhibited a strong amount-dependent seasonality. The isotopic variation (<i>δ</i><sup>18</sup>O) of two springs within the Barva aquifer was simulated using the FlowPC program to determine mean transit times (MTTs). Exponential-piston and dispersion distribution functions provided the best-fit to the observed isotopic composition at Flores and Sacramento springs, respectively. MTTs corresponded to 1.23 ± 0.03 (Sacramento) and 1.42 ± 0.04 (Flores) years. The greater MTT was represented by a homogeneous geochemical composition at Flores, whereas the smaller MTT at Sacramento is reflected in a more variable geochemical response. The results may be used to enhance modelling efforts in central Costa Rica, whereby scarcity of long-term data limits water resources management plans.
DOI: 10.7284/135503
title: Water Temperature data collected during research cruise OC1907X using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135502
title: Timeserver data collected during research cruise OC1907X using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135508
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1908B using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135517
title: Anemometer data collected during research cruise OC1908B using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7368284
title: The impact of surgical intervention on renal function in cystinuria

description: ABSTRACT Introduction: Cystinuria is an autosomal recessive disorder due to intestinal and renal transport defects in cystine and dibasic amino acids, which result in recurrent urolithiasis and surgical interventions. This study aimed to assess the impact of surgical interventions on renal function by analyzing estimated glomerular filtration rates. Methods: Thirteen pediatric patients with cystinuria, who were followed-up in a single tertiary institution between 2004 and 2016, were included in the study. Medical records were reviewed to collect data on clinical presentation of patients, urine parameters, stone formation, medical treatment, surgical intervention, stone recurrence after surgical procedure, stone analysis, ultrasonography, 99m-technetium dimercaptosuccinic acid (99mTc-DMSA) radionuclide imaging results, and follow-up time. Creatinine clearances estimated by modified Schwartz (eGFR) formula before and after surgery were used to assess renal function and compared statistically. Results: Nine patients (69.2%) had renal scarring which were detected with 99mTc-DMSA radionuclide imaging. In ten patients (76.9%), open surgical intervention for stones were needed during follow-up. Significant difference was not detected between eGFR before and after surgical intervention (mean 92 versus 106, p = 0.36). Nine of the patients (69.2%) were stone free in the last ultrasonographic examination. Relapses of stone after surgery were seen in 66.6% of patients who underwent surgical intervention. Conclusions: Surgical interventions for urinary stones are commonly required in patients with cystinuria. Renal scarring is a prevalent finding in cystinuric patients. Surgical interventions have no negative impact on eGFR in patients with cystinuria according to the present study.
DOI: 10.6084/m9.figshare.7368284.v1
title: The impact of surgical intervention on renal function in cystinuria

description: ABSTRACT Introduction: Cystinuria is an autosomal recessive disorder due to intestinal and renal transport defects in cystine and dibasic amino acids, which result in recurrent urolithiasis and surgical interventions. This study aimed to assess the impact of surgical interventions on renal function by analyzing estimated glomerular filtration rates. Methods: Thirteen pediatric patients with cystinuria, who were followed-up in a single tertiary institution between 2004 and 2016, were included in the study. Medical records were reviewed to collect data on clinical presentation of patients, urine parameters, stone formation, medical treatment, surgical intervention, stone recurrence after surgical procedure, stone analysis, ultrasonography, 99m-technetium dimercaptosuccinic acid (99mTc-DMSA) radionuclide imaging results, and follow-up time. Creatinine clearances estimated by modified Schwartz (eGFR) formula before and after surgery were used to assess renal function and compared statistically. Results: Nine patients (69.2%) had renal scarring which were detected with 99mTc-DMSA radionuclide imaging. In ten patients (76.9%), open surgical intervention for stones were needed during follow-up. Significant difference was not detected between eGFR before and after surgical intervention (mean 92 versus 106, p = 0.36). Nine of the patients (69.2%) were stone free in the last ultrasonographic examination. Relapses of stone after surgery were seen in 66.6% of patients who underwent surgical intervention. Conclusions: Surgical interventions for urinary stones are commonly required in patients with cystinuria. Renal scarring is a prevalent finding in cystinuric patients. Surgical interventions have no negative impact on eGFR in patients with cystinuria according to the present study.
DOI: 10.7284/135511
title: Fluorometer data collected during research cruise OC1908B using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7368275
title: Extraction of bioactive compounds of lemongrass, antioxidant activity and evaluation of antimicrobial activity in fresh chicken sausage

description: ABSTRACT: The aim of this work was to determine the best extraction condition of bioactive compounds from lemongrass (Cymbopogon citratus), using the conventional method and ultrasonic assisted extraction, varying the temperature, in order to evaluate the antioxidant activity and the antimicrobial activity of the extract with higher antioxidant power in fresh chicken sausages during the storage period. The extracts were obtained by the conventional method (solvent extraction) and by ultrasound assisted extraction, varying the temperature (20°C, 40°C and 60°C). Phenolic compounds, total flavonoids and antioxidant activity were measured by the DPPH, FRAP, ORAC methods. Conventional extraction and ultrasound methods influenced the phenolic and total flavonoid content at all tested temperatures. Conventional and ultrasonic methods did not influence the IC50 at temperatures of 40°C and 60°C. The antioxidant activity by the DPPH method and by the FRAP method was superior in the conventional method at the temperature of 60°C, however by the ORAC method the best results were in the extraction by ultrasound. The results demonstrate that the conventional extraction at 60ºC was better to obtain extracts of lemongrass with greater amount of bioactive compounds. The antimicrobial capacity evaluated in sausage of fresh chicken showed that in the concentration of 1.0% of the extract protected the product as the growth of mesophilic aerobes and against the growth of psychrotrophic bacteria. Lemongrass can be considered as a natural alternative to obtain extracts rich in bioactive compounds, with antioxidant activity and high antimicrobial capacity.