cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25573/data.24631956
title: All ESVs with consensus IDs, sequences (16S, V4 region), and relative proportions per sample.

description: Estuaries worldwide are grappling with deteriorating water quality and benthic conditions that coincide with the rising detection of pathogenic and potentially pathogenic microbes (PPM). Both indigenous PPM and those that enter estuaries through urban and agricultural runoff are funneled through suspension-feeding organisms and deposited onto the benthos, where they can be moved through food webs. This study explored PPM communities in the Indian River Lagoon system, a biodiverse but urbanized estuary in east central Florida (USA). PPM were surveyed in estuary water, at stormwater outfalls, and in biodeposits of a key suspension feeder, the eastern oyster <i>Crassostrea virginica</i>. A total of 52 microbial exact sequence variants, with per-sample relative abundances up to 61.4%, were identified as PPM. The biodeposits contained relatively more abundant and diverse PPM than the water samples. PPM community composition also differed between seasons and between biodeposits and water. The community differences were driven primarily by <i>Vibrio</i> and <i>Pseudoalteromonas</i> spp. This investigation provides evidence that, through biodeposition, oyster reefs in the IRL estuary are a reservoir for PPM, and it documents some taxa of concern that should be conclusively identified and investigated for their pathogenicity and potential to pervade food webs and fisheries.
DOI: 10.25573/data.24631962.v1
title: PPM ESVs with consensus IDs, sequences (16S, V4 region), and relative proportions per sample.

description: Estuaries worldwide are grappling with deteriorating water quality and benthic conditions that coincide with the rising detection of pathogenic and potentially pathogenic microbes (PPM). Both indigenous PPM and those that enter estuaries through urban and agricultural runoff are funneled through suspension-feeding organisms and deposited onto the benthos, where they can be moved through food webs. This study explored PPM communities in the Indian River Lagoon system, a biodiverse but urbanized estuary in east central Florida (USA). PPM were surveyed in estuary water, at stormwater outfalls, and in biodeposits of a key suspension feeder, the eastern oyster <i>Crassostrea virginica</i>. A total of 52 microbial exact sequence variants, with per-sample relative abundances up to 61.4%, were identified as PPM. The biodeposits contained relatively more abundant and diverse PPM than the water samples. PPM community composition also differed between seasons and between biodeposits and water. The community differences were driven primarily by <i>Vibrio</i> and <i>Pseudoalteromonas</i> spp. This investigation provides evidence that, through biodeposition, oyster reefs in the IRL estuary are a reservoir for PPM, and it documents some taxa of concern that should be conclusively identified and investigated for their pathogenicity and potential to pervade food webs and fisheries.
DOI: 10.25573/data.24632091.v1
title: Sample metadata.

description: Estuaries worldwide are grappling with deteriorating water quality and benthic conditions that coincide with the rising detection of pathogenic and potentially pathogenic microbes (PPM). Both indigenous PPM and those that enter estuaries through urban and agricultural runoff are funneled through suspension-feeding organisms and deposited onto the benthos, where they can be moved through food webs. This study explored PPM communities in the Indian River Lagoon system, a biodiverse but urbanized estuary in east central Florida (USA). PPM were surveyed in estuary water, at stormwater outfalls, and in biodeposits of a key suspension feeder, the eastern oyster <i>Crassostrea virginica</i>. A total of 52 microbial exact sequence variants, with per-sample relative abundances up to 61.4%, were identified as PPM. The biodeposits contained relatively more abundant and diverse PPM than the water samples. PPM community composition also differed between seasons and between biodeposits and water. The community differences were driven primarily by <i>Vibrio</i> and <i>Pseudoalteromonas</i> spp. This investigation provides evidence that, through biodeposition, oyster reefs in the IRL estuary are a reservoir for PPM, and it documents some taxa of concern that should be conclusively identified and investigated for their pathogenicity and potential to pervade food webs and fisheries.
DOI: 10.25573/data.24632157
title: Assigned taxonomy (100% matches only, 16S, V4 region) for all PPM ESVs.

description: Estuaries worldwide are grappling with deteriorating water quality and benthic conditions that coincide with the rising detection of pathogenic and potentially pathogenic microbes (PPM). Both indigenous PPM and those that enter estuaries through urban and agricultural runoff are funneled through suspension-feeding organisms and deposited onto the benthos, where they can be moved through food webs. This study explored PPM communities in the Indian River Lagoon system, a biodiverse but urbanized estuary in east central Florida (USA). PPM were surveyed in estuary water, at stormwater outfalls, and in biodeposits of a key suspension feeder, the eastern oyster <i>Crassostrea virginica</i>. A total of 52 microbial exact sequence variants, with per-sample relative abundances up to 61.4%, were identified as PPM. The biodeposits contained relatively more abundant and diverse PPM than the water samples. PPM community composition also differed between seasons and between biodeposits and water. The community differences were driven primarily by <i>Vibrio</i> and <i>Pseudoalteromonas</i> spp. This investigation provides evidence that, through biodeposition, oyster reefs in the IRL estuary are a reservoir for PPM, and it documents some taxa of concern that should be conclusively identified and investigated for their pathogenicity and potential to pervade food webs and fisheries.
DOI: 10.25573/data.24632157.v1
title: Assigned taxonomy (100% matches only, 16S, V4 region) for all PPM ESVs.

description: Estuaries worldwide are grappling with deteriorating water quality and benthic conditions that coincide with the rising detection of pathogenic and potentially pathogenic microbes (PPM). Both indigenous PPM and those that enter estuaries through urban and agricultural runoff are funneled through suspension-feeding organisms and deposited onto the benthos, where they can be moved through food webs. This study explored PPM communities in the Indian River Lagoon system, a biodiverse but urbanized estuary in east central Florida (USA). PPM were surveyed in estuary water, at stormwater outfalls, and in biodeposits of a key suspension feeder, the eastern oyster <i>Crassostrea virginica</i>. A total of 52 microbial exact sequence variants, with per-sample relative abundances up to 61.4%, were identified as PPM. The biodeposits contained relatively more abundant and diverse PPM than the water samples. PPM community composition also differed between seasons and between biodeposits and water. The community differences were driven primarily by <i>Vibrio</i> and <i>Pseudoalteromonas</i> spp. This investigation provides evidence that, through biodeposition, oyster reefs in the IRL estuary are a reservoir for PPM, and it documents some taxa of concern that should be conclusively identified and investigated for their pathogenicity and potential to pervade food webs and fisheries.
DOI: 10.25573/data.24631914
title: Temperature and salinity data for both seasons.

description: Estuaries worldwide are grappling with deteriorating water quality and benthic conditions that coincide with the rising detection of pathogenic and potentially pathogenic microbes (PPM). Both indigenous PPM and those that enter estuaries through urban and agricultural runoff are funneled through suspension-feeding organisms and deposited onto the benthos, where they can be moved through food webs. This study explored PPM communities in the Indian River Lagoon system, a biodiverse but urbanized estuary in east central Florida (USA). PPM were surveyed in estuary water, at stormwater outfalls, and in biodeposits of a key suspension feeder, the eastern oyster <i>Crassostrea virginica</i>. A total of 52 microbial exact sequence variants, with per-sample relative abundances up to 61.4%, were identified as PPM. The biodeposits contained relatively more abundant and diverse PPM than the water samples. PPM community composition also differed between seasons and between biodeposits and water. The community differences were driven primarily by <i>Vibrio</i> and <i>Pseudoalteromonas</i> spp. This investigation provides evidence that, through biodeposition, oyster reefs in the IRL estuary are a reservoir for PPM, and it documents some taxa of concern that should be conclusively identified and investigated for their pathogenicity and potential to pervade food webs and fisheries.
DOI: 10.25573/data.24631914.v1
title: Temperature and salinity data for both seasons.

description: Estuaries worldwide are grappling with deteriorating water quality and benthic conditions that coincide with the rising detection of pathogenic and potentially pathogenic microbes (PPM). Both indigenous PPM and those that enter estuaries through urban and agricultural runoff are funneled through suspension-feeding organisms and deposited onto the benthos, where they can be moved through food webs. This study explored PPM communities in the Indian River Lagoon system, a biodiverse but urbanized estuary in east central Florida (USA). PPM were surveyed in estuary water, at stormwater outfalls, and in biodeposits of a key suspension feeder, the eastern oyster <i>Crassostrea virginica</i>. A total of 52 microbial exact sequence variants, with per-sample relative abundances up to 61.4%, were identified as PPM. The biodeposits contained relatively more abundant and diverse PPM than the water samples. PPM community composition also differed between seasons and between biodeposits and water. The community differences were driven primarily by <i>Vibrio</i> and <i>Pseudoalteromonas</i> spp. This investigation provides evidence that, through biodeposition, oyster reefs in the IRL estuary are a reservoir for PPM, and it documents some taxa of concern that should be conclusively identified and investigated for their pathogenicity and potential to pervade food webs and fisheries.
DOI: 10.25573/data.24631956.v1
title: All ESVs with consensus IDs, sequences (16S, V4 region), and relative proportions per sample.

description: Estuaries worldwide are grappling with deteriorating water quality and benthic conditions that coincide with the rising detection of pathogenic and potentially pathogenic microbes (PPM). Both indigenous PPM and those that enter estuaries through urban and agricultural runoff are funneled through suspension-feeding organisms and deposited onto the benthos, where they can be moved through food webs. This study explored PPM communities in the Indian River Lagoon system, a biodiverse but urbanized estuary in east central Florida (USA). PPM were surveyed in estuary water, at stormwater outfalls, and in biodeposits of a key suspension feeder, the eastern oyster <i>Crassostrea virginica</i>. A total of 52 microbial exact sequence variants, with per-sample relative abundances up to 61.4%, were identified as PPM. The biodeposits contained relatively more abundant and diverse PPM than the water samples. PPM community composition also differed between seasons and between biodeposits and water. The community differences were driven primarily by <i>Vibrio</i> and <i>Pseudoalteromonas</i> spp. This investigation provides evidence that, through biodeposition, oyster reefs in the IRL estuary are a reservoir for PPM, and it documents some taxa of concern that should be conclusively identified and investigated for their pathogenicity and potential to pervade food webs and fisheries.
DOI: 10.25573/data.24631962
title: PPM ESVs with consensus IDs, sequences (16S, V4 region), and relative proportions per sample.

description: Estuaries worldwide are grappling with deteriorating water quality and benthic conditions that coincide with the rising detection of pathogenic and potentially pathogenic microbes (PPM). Both indigenous PPM and those that enter estuaries through urban and agricultural runoff are funneled through suspension-feeding organisms and deposited onto the benthos, where they can be moved through food webs. This study explored PPM communities in the Indian River Lagoon system, a biodiverse but urbanized estuary in east central Florida (USA). PPM were surveyed in estuary water, at stormwater outfalls, and in biodeposits of a key suspension feeder, the eastern oyster <i>Crassostrea virginica</i>. A total of 52 microbial exact sequence variants, with per-sample relative abundances up to 61.4%, were identified as PPM. The biodeposits contained relatively more abundant and diverse PPM than the water samples. PPM community composition also differed between seasons and between biodeposits and water. The community differences were driven primarily by <i>Vibrio</i> and <i>Pseudoalteromonas</i> spp. This investigation provides evidence that, through biodeposition, oyster reefs in the IRL estuary are a reservoir for PPM, and it documents some taxa of concern that should be conclusively identified and investigated for their pathogenicity and potential to pervade food webs and fisheries.
DOI: 10.17630/260b9d19-098c-499e-bfaf-3eba60ef74c4
title: Application of Stabilised Bis(phosphonium ylides) for Separation of Dicarboxylic Acids (dataset)
DOI: 10.6084/m9.figshare.24632184
title: Data for figures

description: <br>Data related to the paper "Quantum simulation of Pauli channels and dynamical maps: algorithm and implementation"<br><br>
DOI: 10.35078/jjo0z7/gyrugc
title: Vargem do Severo B.jpg

description: :unav
DOI: 10.35078/jkklhm/wtej34
title: Ribeirão do Boi Sítio A.jpg

description: :unav
DOI: 10.35078/g07loe/rdavrb
title: Beira Córrego A.jpg

description: :unav
DOI: 10.35078/x6dfbx/jpjwfu
title: Córrego Dacamão Sítio B.jpg

description: :unav
DOI: 10.35078/jjo0z7/uuv457
title: Lapinha B.jpg

description: :unav
DOI: 10.35078/jkklhm/yx0mdw
title: Barreirinho D.jpg

description: :unav
DOI: 10.35078/418ep7/o7lojy
title: Salobo I C.jpg

description: :unav
DOI: 10.35078/x6dfbx/hjgahs
title: Cabeceira Córrego da Laje A.jpg

description: :unav
DOI: 10.35078/g07loe/0xronw
title: Chupé E.jpg

description: :unav
DOI: 10.35078/jkklhm/fclycs
title: Capão de Cinza Sítio A.jpg

description: :unav
DOI: 10.35078/418ep7/oagvmc
title: Vinhático A.jpg

description: :unav
DOI: 10.35078/jjo0z7/y365ap
title: Pau d'Óleo A.jpg

description: :unav
DOI: 10.35078/g07loe/1nkphf
title: Serrinha A.jpg

description: :unav
DOI: 10.35078/jjo0z7/y1kzd0
title: São Domingos A.jpg

description: :unav
DOI: 10.35078/jkklhm/vn9h4q
title: Lajes B.jpg

description: :unav
DOI: 10.35078/x6dfbx/gqewd8
title: Brandão A.jpg

description: :unav
DOI: 10.35078/418ep7/idmzdm
title: Sucuriú I A.jpg

description: :unav
DOI: 10.35078/g07loe/evuofb
title: Modeinas B.jpg

description: :unav
DOI: 10.35078/x6dfbx/zy4uce
title: Grota São Miguel II B.jpg

description: :unav
DOI: 10.35078/418ep7/lrjwqu
title: Santa Cruz II A.jpg

description: :unav
DOI: 10.35078/g07loe/3gkzjp
title: Pião B.jpg

description: :unav
DOI: 10.35078/jjo0z7/ba4iw5
title: Campestre A.jpg

description: :unav
DOI: 10.35078/x6dfbx/817zo3
title: Córrego Mandingueiro A.jpg

description: :unav
DOI: 10.35078/jjo0z7/h1vmxx
title: Intendente B.jpg

description: :unav
DOI: 10.35078/418ep7/uyk1ci
title: Vargem Comprida D.jpg

description: :unav
DOI: 10.35078/g07loe/9z05ju
title: Retiro do Paiol Sítio A.jpg

description: :unav
DOI: 10.35078/jkklhm/wlnc8s
title: Alto Santa Rita Bairro F.jpg

description: :unav
DOI: 10.35078/jjo0z7/5aztlu
title: Campestre B.jpg

description: :unav
DOI: 10.35078/x6dfbx/82jwjs
title: Bom Sucesso I A.jpg

description: :unav
DOI: 10.35078/g07loe/o0f6xw
title: Vinhático B.jpg

description: :unav
DOI: 10.35078/418ep7/jzymfl
title: São José das Pedras Pov. F.jpg

description: :unav
DOI: 10.35078/jkklhm/i8phst
title: Florença D.jpg

description: :unav
DOI: 10.35078/jjo0z7/dkn0z0
title: Jacu B.jpg

description: :unav
DOI: 10.35078/x6dfbx/1dohen
title: Cabeceira Córrego Mandingueiro II A.jpg

description: :unav
DOI: 10.35078/g07loe/qo2o0a
title: Santa Izabel A.jpg

description: :unav
DOI: 10.35078/jkklhm/nutble
title: Barreirinho A.jpg

description: :unav
DOI: 10.35078/418ep7/vdfhbz
title: Vargem de Cima Pov. D.jpg

description: :unav
DOI: 10.35078/jjo0z7/ptoogr
title: Córrego Fundo B.jpg

description: :unav
DOI: 10.35078/x6dfbx/spq067
title: Córrego das Braúnas III B.jpg

description: :unav
DOI: 10.35078/g07loe/cjheot
title: Chupé C.jpg

description: :unav
DOI: 10.35078/jjo0z7/c1vzk1
title: Córrego Fundo A.jpg

description: :unav
DOI: 10.35078/jkklhm/w6krpp
title: Ribeirão das Almas II F.jpg

description: :unav
DOI: 10.35078/418ep7/ojlhxo
title: Tomaz Gonzaga Vila B.jpg

description: :unav
DOI: 10.35078/x6dfbx/pmjtdn
title: Grota Comprida Sítio A.jpg

description: :unav
DOI: 10.35078/418ep7/g6hnzs
title: Tibirinha Bairro A.jpg

description: :unav
DOI: 10.35078/jjo0z7/h5b9k9
title: Carioca B.jpg

description: :unav
DOI: 10.35078/jkklhm/pgr6w1
title: Juventino Sítio C.jpg

description: :unav
DOI: 10.35078/x6dfbx/nhqwrb
title: Cachoeira III B.jpg

description: :unav
DOI: 10.35078/418ep7/oytwjo
title: Várzea do Curral Sítio A.jpg

description: :unav
DOI: 10.35078/g07loe/5yi66p
title: Monjolinho B.jpg

description: :unav
DOI: 10.35078/jjo0z7/ggdd2q
title: Canavial A.jpg

description: :unav
DOI: 10.35078/jkklhm/f2s2aa
title: Alto Bom Jesus Bairro C.jpg

description: :unav
DOI: 10.35078/x6dfbx/ys7iht
title: Varjão A.jpg

description: :unav
DOI: 10.35078/418ep7/ctjkga
title: São José das Pedras Pov. B.jpg

description: :unav
DOI: 10.35078/g07loe/j4uw8r
title: Santa Rita I A.jpg

description: :unav
DOI: 10.35078/jjo0z7/3cm4io
title: Falcão B.jpg

description: :unav
DOI: 10.35078/jkklhm/xjpm3i
title: Barreiro I A.jpg

description: :unav
DOI: 10.35078/x6dfbx/e7tuib
title: Duas Barras II B.jpg

description: :unav
DOI: 10.35078/418ep7/zguksz
title: São Miguel da Grama E.jpg

description: :unav
DOI: 10.35078/g07loe/nq595r
title: Mata Salgada A.jpg

description: :unav
DOI: 10.35078/jjo0z7/xaxayq
title: Pau d'Óleo B.jpg

description: :unav
DOI: 10.35078/418ep7/aot8fv
title: Várzea do Barro C.jpg

description: :unav
DOI: 10.35078/jkklhm/qgglrx
title: Engenho D.jpg

description: :unav
DOI: 10.35078/x6dfbx/gygazt
title: Córrego do Indaiá A.jpg

description: :unav
DOI: 10.35078/jjo0z7/wqoeox
title: Falcão C.jpg

description: :unav
DOI: 10.35078/g07loe/wjjsqk
title: Cachoeira de Cima B.jpg

description: :unav
DOI: 10.35078/418ep7/8wlht6
title: Santa Rita do Cedro Pov. B.jpg

description: :unav
DOI: 10.35078/jkklhm/rr3mx8
title: Ponte do Maquiné D.jpg

description: :unav
DOI: 10.35078/x6dfbx/yo4gwy
title: Bálsamo Sítio A.jpg

description: :unav
DOI: 10.35078/jjo0z7/l1pwho
title: Capão Grande B.jpg

description: :unav
DOI: 10.35078/418ep7/kq8nxi
title: Vaca Branca F.jpg

description: :unav
DOI: 10.35078/g07loe/zomwkg
title: Meio A.jpg

description: :unav
DOI: 10.35078/jjo0z7/5iuxug
title: Vereda A.jpg

description: :unav
DOI: 10.35078/jkklhm/oxoxrv
title: Salobinho A.jpg

description: :unav
DOI: 10.35078/x6dfbx/jilaws
title: Cabeceira do Serrinha II B.jpg

description: :unav
DOI: 10.35078/418ep7/a4cfun
title: São Gregório B.jpg

description: :unav
DOI: 10.35078/g07loe/ectgxp
title: Paraíso A.jpg

description: :unav
DOI: 10.35078/x6dfbx/rsnqnk
title: Emburana Sítio C.jpg

description: :unav
DOI: 10.35078/g07loe/xhplot
title: Derrubada I B.jpg

description: :unav
DOI: 10.35078/jkklhm/udavrn
title: Gustavo da Silveira Pov. C.jpg

description: :unav
DOI: 10.35078/jjo0z7/tsfvpk
title: Enjeitado A.jpg

description: :unav
DOI: 10.35078/418ep7/c1mz1v
title: São Domingos B.jpg

description: :unav
DOI: 10.35078/jkklhm/epkjj9
title: Primavera I B.jpg

description: :unav
DOI: 10.35078/x6dfbx/ubim3l
title: Córrego Côcos Sítio B.jpg

description: :unav
DOI: 10.35078/g07loe/sttxq7
title: Rua do Jirau B.jpg

description: :unav
DOI: 10.35078/jjo0z7/q2hva7
title: Serra do Manoel Rodrigues C.jpg

description: :unav
DOI: 10.35078/418ep7/9co60q
title: São Domingos A.jpg

description: :unav
DOI: 10.35078/jkklhm/jlxdlu
title: Córrego do Barreiro D.jpg

description: :unav
DOI: 10.35078/x6dfbx/rwmqnv
title: Córrego Souza Sítio B.jpg

description: :unav
DOI: 10.35078/418ep7/zpf08e
title: Varginha II C.jpg

description: :unav
DOI: 10.35078/g07loe/1rxg6f
title: Pompinos B.jpg

description: :unav
DOI: 10.35078/jjo0z7/ziahps
title: Fabiano D.jpg

description: :unav
DOI: 10.35078/x6dfbx/0knqil
title: São Felipe Acamp. A.jpg

description: :unav
DOI: 10.35078/418ep7/vpw826
title: Vargem de Cima Pov. F.jpg

description: :unav
DOI: 10.35078/g07loe/uf9nyg
title: Taquara A.jpg

description: :unav
DOI: 10.35078/jkklhm/b4zisd
title: Córrego do Riachinho B.jpg

description: :unav
DOI: 10.35078/jjo0z7/mvfaxc
title: Enjeitado B.jpg

description: :unav
DOI: 10.35078/418ep7/ekcbmy
title: São José das Pedras Pov. C.jpg

description: :unav
DOI: 10.35078/g07loe/jsouzc
title: Melo Viana Vila B.jpg

description: :unav
DOI: 10.35078/x6dfbx/jjtxbs
title: Cabeceira Córrego da Paca B.jpg

description: :unav
DOI: 10.35078/jkklhm/pxvtyj
title: Angicos II Pov. A.jpg

description: :unav
DOI: 10.35078/418ep7/yhlyes
title: Vargem do Morro B.jpg

description: :unav
DOI: 10.35078/g07loe/zdlqqb
title: Estiva A.jpg

description: :unav
DOI: 10.35078/x6dfbx/fgnoey
title: Grota do Patinho-Caetano A.jpg

description: :unav
DOI: 10.35078/jjo0z7/t25mqn
title: Córrego do Bicho C.jpg

description: :unav
DOI: 10.35078/g07loe/zloel2
title: Santa Maria A.jpg

description: :unav
DOI: 10.35078/jkklhm/tir2km
title: Esperança Bairro A.jpg

description: :unav
DOI: 10.35078/418ep7/snpzg9
title: São Jorge Sítio C.jpg

description: :unav
DOI: 10.35078/x6dfbx/vpjsmg
title: Cabeceira Córrego Gameleira Sítio B.jpg

description: :unav
DOI: 10.35078/jjo0z7/6aay3q
title: Bate Sol B.jpg

description: :unav
DOI: 10.35078/418ep7/xuun8n
title: Salobo II D.jpg

description: :unav
DOI: 10.35078/g07loe/2fgdzt
title: Mangabeira A.jpg

description: :unav
DOI: 10.35078/jkklhm/98w4ns
title: João Leite F.jpg

description: :unav
DOI: 10.35078/x6dfbx/2xfagj
title: Gangorrinha A.jpg

description: :unav
DOI: 10.35078/jjo0z7/t5nw7i
title: Água Limpa B.jpg

description: :unav
DOI: 10.35078/x6dfbx/nnnwyz
title: Chico Guedes A.jpg

description: :unav