cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13341146
title: Assembled "juvenile head region" transcriptome from the hagfish Eptatretus burgeri (NCBI GenBank Accession: SRX2541845)

description: 1) The raw reads were dwonloaded from NCBI GenBank (SRA run accession: (SRR5234495) with sratoolkit.

2) The assembly was performed with Trinity with the folllowing parameters:

Trinity --seqType fq --max_memory 100G --left eb-hf-head-region-SRR5234495/eb-hf-head-region-SRR5234495_1.fastq --right eb-hf-head-region-SRR5234495/eb-hf-head-region-SRR5234495_1.fastq --CPU 10 --output trinity-transcriptome-eb/

3) ORFs were predeicted with TransDecoder with the following settings:

TransDecoder.LongOrfs -t transcriptome-eb-hf-head-region.fasta

TransDecoder.Predict -t transcriptome-eb-hf-head-region.fasta
DOI: 10.5281/zenodo.13341147
title: Assembled "juvenile head region" transcriptome from the hagfish Eptatretus burgeri (NCBI GenBank Accession: SRX2541845)

description: 1) The raw reads were dwonloaded from NCBI GenBank (SRA run accession: (SRR5234495) with sratoolkit.

2) The assembly was performed with Trinity with the folllowing parameters:

Trinity --seqType fq --max_memory 100G --left eb-hf-head-region-SRR5234495/eb-hf-head-region-SRR5234495_1.fastq --right eb-hf-head-region-SRR5234495/eb-hf-head-region-SRR5234495_1.fastq --CPU 10 --output trinity-transcriptome-eb/

3) ORFs were predeicted with TransDecoder with the following settings:

TransDecoder.LongOrfs -t transcriptome-eb-hf-head-region.fasta

TransDecoder.Predict -t transcriptome-eb-hf-head-region.fasta
DOI: 10.15468/dl.wehunq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron kerowagiense Argent"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073648-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gwu5f
title: Occurrence Download

description: A dataset containing 828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((13.36995 45.49752,15.87517 45.49752,16.46306 46.89999,13.36995 46.56955,13.36995 45.49752))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Abies alba Mill."
 ]
}

 The dataset includes 828 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073649-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsyftt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.706372 -34.671177, 148.706372 -34.673423, 148.710863 -34.673423, 148.710863 -34.671177, 148.706372 -34.671177))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073650-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.24659154.v1
title: Belowground traits, rare species, and environmental stress regulate the biodiversity-ecosystem function relationship

description: The dataset represents data used in the publication "Belowground traits, rare species, and environmental stress regulate the biodiversity-ecosystem function relationship". ABSTRACT(1) Understanding the relationship between biodiversity and ecosystem functioning (BEF) is crucial to predicting the consequences of ongoing global biodiversity loss. However, what drives BEF relationships in natural ecosystems under globally changing conditions remains poorly understood.(2) To address this knowledge gap, we applied a trait-based approach to data from coastal dune plant communities distributed along a natural environmental stress gradient. Specifically, we compared the relative importance of belowground and aboveground traits in predicting productivity, decomposition, water regulation, carbon stock, and nutrient pools, and tested how these BEF relationships were modulated by environmental stress and the presence of rare species that are typically excluded from experimental systems.(3) Belowground traits were just as important as aboveground traits in driving ecosystem functioning. Moreover, despite having low abundances, rare species positively influenced ecosystem multifunctionality. However, most biodiversity effects became weaker as environmental stress increased.(4) Our study shows that to understand variation in ecosystem functioning we must consider belowground traits as much as aboveground ones. Moreover, it highlights the importance of conserving rare species for maintaining ecosystem multifunctionality. However, our findings also suggest that rapid global change could dampen the positive effects of diversity on ecosystem functioning.
DOI: 10.15468/dl.smzcd2
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mozambique",
 "OccurrenceStatus is Present",
 "TaxonKey is Leptactina papyrophloea Verdc."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073652-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xyvzr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.266195 -34.682406, 148.266195 -34.684652, 148.268441 -34.684652, 148.268441 -34.682406, 148.266195 -34.682406))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073651-240626123714530/datasets/export for details.
DOI: 10.15468/dl.2845qk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.36501 -34.682406, 148.36501 -34.684652, 148.367256 -34.684652, 148.367256 -34.682406, 148.36501 -34.682406))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073653-240626123714530/datasets/export for details.
DOI: 10.15468/dl.amktmy
title: Occurrence Download

description: A dataset containing 431184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (June, July, May)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aphantopus hyperantus (Linnaeus, 1758)",
 "Year 2014-2024"
 ]
}

 The dataset includes 431184 records from 1063 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073640-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nd7hvg
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "Year 2017-2019",
 "TaxonKey is Populus nigra L."
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013975-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drqfcb
title: Occurrence Download

description: A dataset containing 815 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Canada",
 "TaxonKey is Vespa crabro Linnaeus"
 ]
}

 The dataset includes 815 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041583-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bjnd4
title: Occurrence Download

description: A dataset containing 20827 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Polypedates braueri (Vogt, 1911)"
 ]
}

 The dataset includes 20827 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019206-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4x2yyv
title: Occurrence Download

description: A dataset containing 5573 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Unknown evidence",
 "BasisOfRecord is Observation"
 ]
 },
 "Geometry POLYGON((-72.25831 -17.96271,-77.49746 -32.52945,-81.09566 -47.81346,-72.04988 -56.91639,-63.29025 -56.40291,-71.44518 -49.99013,-71.15904 -41.95694,-66.37058 -23.20634,-68.0874 -15.95809,-72.25831 -17.96271))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 5573 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117079-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ux0dkp
title: Occurrence Download

description: A dataset containing 1078 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON ((-89.1650390625 17.811456088564483, -90.98876953125 17.8742034396575, -91.03271484375 17.97873309555617, -91.29638671875 17.95783210227242, -91.51611328125 18.104087015773956, -91.60400390625 17.8742034396575, -92.17529296875 18.104087015773956, -92.197265625 18.3336694457713, -92.46093749999999 18.458768120015126, -92.52685546875 18.646245142670608, -92.0654296875 18.729501999072138, -91.40625 18.87510275035649, -90.98876953125 19.08288436934017, -90.7470703125 19.31114335506464, -90.703125 19.663280219987662, -90.50537109375 19.87005983797396, -90.50537109375 20.2209657795223, -90.3515625 20.756113874762082, -90.24169921875 21.002471054356725, -89.9560546875 21.207458730482642, -89.62646484375 21.207458730482642, -89.14306640625 21.3303150734318, -88.72558593749999 21.453068633086783, -88.52783203125 21.53484700204879, -87.5830078125 21.555284406923192, -87.25341796875 21.43261686447735, -87.07763671875 21.43261686447735, -87.03369140625 21.616579336740603, -86.748046875 21.49396356306447, -86.7041015625 21.268899719967695, -86.748046875 21.04349121680354, -86.923828125 20.797201434307, -87.0556640625 20.52993312517078, -87.36328125 20.2209657795223, -87.38525390624999 20.014645445341365, -87.4072265625 19.87005983797396, -87.34130859375 19.621892180319374, -87.38525390624999 19.31114335506464, -87.60498046875 18.979025953255267, -87.73681640625 18.58377568837094, -87.78076171875 18.166730410221938, -87.91259765625 18.04142122189195, -88.06640625 18.396230138028827, -88.41796875 18.500447458475094, -88.9013671875 17.916022703877665, -89.07714843749999 17.99963161491187, -89.18701171875 17.916022703877665, -89.1650390625 17.811456088564483))",
 "TaxonKey is Chlorostilbon canivetii (R.Lesson, 1832)"
 ]
}

 The dataset includes 1078 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006361-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7exvc
title: Occurrence Download

description: A dataset containing 1707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "Geometry POLYGON((-81.43379 28.29939,-81.42782 28.21978,-81.41428 28.16153,-81.35178 28.12432,-81.30878 28.16926,-81.37328 28.30009,-81.43379 28.29939))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Rostrhamus sociabilis sociabilis, Rostrhamus sociabilis plumbeus Ridgway, 1874, Rostrhamus sociabilis major Nelson & Goldman, 1933, Rostrhamus sociabilis levis Friedmann, 1933, Rostrhamus sociabilis (Vieillot, 1817))",
 "Year 1993-2023"
 ]
}

 The dataset includes 1707 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058898-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewr5rq
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Festucalex kulbickii Fricke, 2004"
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0347086-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.igka4u
title: Occurrence Download

description: A dataset containing 4737 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gahnia grandis (Labill.) S.T.Blake",
 "HasCoordinate is TRUE",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Literature Occurrence"
 ]
 }
 ]
}

 The dataset includes 4737 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006361-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hf2g7w
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pristimantis altamnis Elmer & Cannatella, 2008"
 ]
}

 The dataset includes 214 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117092-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4vqzp
title: Occurrence Download

description: A dataset containing 1401 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Carcharhinus longimanus (Poey, 1861)",
 "Year 1998-2024"
 ]
}

 The dataset includes 1401 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058886-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j27syp
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mesovelia hackeri Harris & Drake, 1941)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 61 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041584-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9d6mhm
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "Year 2017-2019",
 "TaxonKey is Pyracantha angustifolia (Franch.) C.K.Schneid."
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013978-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.774hss
title: Occurrence Download

description: A dataset containing 12549 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carica papaya L."
 ]
}

 The dataset includes 12549 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098837-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.554nge
title: Occurrence Download

description: A dataset containing 830 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Abelmoschus sagittifolius (Kurz) Merr., Abelmoschus rhodopetalus F.Muell., Hibiscus sagittifolius var. quinquelobus Gagnep., Hibiscus sagittifolius Kurz)"
 ]
}

 The dataset includes 830 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058896-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g2f599
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((9.52871 41.31815,10.4534 43.04265,8.73367 41.53742,14.33092 36.58934,17.21144 38.64311,14.29456 41.37288,10.59662 43.11458,9.52871 41.31815))",
 "HasGeospatialIssue is false",
 "TaxonKey is Caretta caretta (Linnaeus, 1758)",
 "Year 2012-2021"
 ]
}

 The dataset includes 87 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058913-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpcp3y
title: Occurrence Download

description: A dataset containing 33673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pipistrellus kuhlii (Kuhl, 1817)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33673 records from 214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123228-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chkxh4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Festucalex rufus Allen & Erdmann, 2015"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0347087-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kfynd
title: Occurrence Download

description: A dataset containing 88500 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Kenya",
 "DatasetKey is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 88500 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058905-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.inxceo
title: Occurrence Download

description: A dataset listing the 2756631 species recorded in GBIF matching the query:
{ }

 The dataset's 2756631 records were derived from 24878 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013999-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c65zt3
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Myonycteris leptodon K.Andersen, 1908"
 ]
}

 The dataset includes 40 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031451-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zh2yws
title: Occurrence Download

description: A dataset containing 464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Myonycteris angolensis"
 ]
}

 The dataset includes 464 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031452-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qm88qa
title: Occurrence Download

description: A dataset containing 582 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sturnira oporaphilum (Tschudi, 1844)"
 ]
}

 The dataset includes 582 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031454-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5fgg2
title: Occurrence Download

description: A dataset containing 1156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "OccurrenceStatus is Present",
 "TaxonKey is Atypus affinis Eichwald, 1830",
 "Year 1000-2024"
 ]
}

 The dataset includes 1156 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031456-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3yr9a
title: Occurrence Download

description: A dataset containing 362 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sturnira luisi Davis, 1980"
 ]
}

 The dataset includes 362 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031455-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p5ht65
title: Occurrence Download

description: A dataset containing 8443 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sturnira lilium (E.Geoffroy, 1810)"
 ]
}

 The dataset includes 8443 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031457-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q62963
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "OccurrenceStatus is Present",
 "TaxonKey is Atypus affinis Eichwald, 1830",
 "Year 2018-2024"
 ]
}

 The dataset includes 153 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031460-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.