cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20357862
title: Readme_for_data.xlsx

description: <strong>Global yield advantage and its drivers of legume-based rotations</strong>
DOI: 10.6084/m9.figshare.20357862.v1
title: Readme_for_data.xlsx

description: <strong>Global yield advantage and its drivers of legume-based rotations</strong>
DOI: 10.5281/zenodo.6619381
title: Regiochemical Effects for the Mechanochemical Activation of 9-π-Extended Anthracene-Maleimide Diels-Alder Adducts

description: Primary data used in the manuscript (NMR, MS, UV-vis, GPC) sorted after compound number according to the manuscript: CoGEF simulations in the ZIP file "CoGEF simulations" GPC elugrams after sonication in the ZIP file "GPC after sonication" Characterization after synthesis (NMR, MS, GPC) in the ZIP file "synthesis" UV-vis absoprtion spectra over the course of the sonication experiments in the ZIP file "UV-vis after sonication" UV-vis absoprtion spectra of the small control compounds for determination of molar absorptivities in the ZIP file "UV-vis for molar absorptivities"
DOI: 10.5281/zenodo.6619380
title: Regiochemical Effects for the Mechanochemical Activation of 9-π-Extended Anthracene-Maleimide Diels-Alder Adducts

description: Primary data used in the manuscript (NMR, MS, UV-vis, GPC) sorted after compound number according to the manuscript: CoGEF simulations in the ZIP file "CoGEF simulations" GPC elugrams after sonication in the ZIP file "GPC after sonication" Characterization after synthesis (NMR, MS, GPC) in the ZIP file "synthesis" UV-vis absoprtion spectra over the course of the sonication experiments in the ZIP file "UV-vis after sonication" UV-vis absoprtion spectra of the small control compounds for determination of molar absorptivities in the ZIP file "UV-vis for molar absorptivities"
DOI: 10.6084/m9.figshare.20357487
title: Supplementary Material for: Frailty Prevalence, Incidence, and Association with Incident Disability in the Italian Longitudinal Study on Aging

description: <b><i>Introduction:</i></b> Data on frailty frequency are heterogeneous and mostly based on cross-sectional studies. Little is known about frailty development and progression over time. Our aim was to conduct a systematic analysis of frailty prevalence and incidence in a large cohort of older adults and to evaluate the association with incident disability, in order to tackle the current paucity and fragmentation of longitudinal data on frailty. <b><i>Methods:</i></b> As secondary analysis of the Italian Longitudinal Study on Aging (ILSA) population-based cohort (<i>n</i> = 5,632, 65–84), frailty status was operationalized according to Fried criteria (<i>n</i> = 2,457). Weighted prevalence and incidence rates were calculated at each ILSA wave (T0 1992–1993, T1 1995–1996, T2 2000–2001). The association with incident disability in Activities of Daily Living (ADL) or Instrumental Activities of Daily Living (IADL) was investigated through Cox proportional hazard models, controlling for possible confounders. <b><i>Results:</i></b> Prevalence of frailty and pre-frailty at baseline (mean age 71.6 years; women 58.9%) were 4.0% (95% confidence interval [CI]: 3.4–4.6) and 44.6% (95% CI: 43.1–46.1), respectively. Incidence rates per 1,000 person-years for the T0–T1 interval were 7.3 (95% CI: 5.2–9.3) for frailty and 83.7 (95% CI: 73.6–93.8) for pre-frailty. Prevalence and incidence of frailty, and to a lesser degree of pre-frailty, were overall higher for women and increased with age, yet no increasing trend with advancing age was detected for pre-frailty incidence. Frailty incidence rates were significantly higher among pre-frail than non-frail individuals at follow-up entry. After full adjustment, being frail markedly increased the risk of incident disability in ADL (hazard ratio [HR] 3.58, 95% CI: 1.97–6.52) and IADL (HR 2.56, 95% CI: 1.58–4.16) over a 4-year period. <b><i>Discussion/Conclusion:</i></b> According to our findings, frailty is common among older people and is a strong and independent predictor of disability. Further research on factors and characteristics related to frailty progression, and especially remission, over time is crucial to calibrate effective public health preventive measures.
DOI: 10.6084/m9.figshare.20357913
title: Raw Reads Excel.xlsx

description: NGS Raw Reads excel file
DOI: 10.6084/m9.figshare.20357913.v1
title: Raw Reads Excel.xlsx

description: NGS Raw Reads excel file
DOI: 10.6084/m9.figshare.20169842.v1
title: Supplementary Material for: Diagnostic value of sST2, VCAM-1 and adiponectin in patients with breast cancer to predict anti-tumor treatment-related cardiac events: A pilot study

description: Aim The present exploratory study investigated the diagnostic value of inflammatory markers in patients with breast cancer to predict anti-tumour treatment-related cardiac events. Methods Twenty-one patients with breast cancer were enrolled in this prospective observational study and followed over 6 months. Transthoracic echocardiography and measurement of cardiac (N terminal prohormone of brain natriuretic peptide (NT proBNP), Troponin I (TnI)) and inflammatory biomarkers (vascular adhesion molecule 1 (VCAM-1), soluble suppression of tumorigenesis-2 (sST2), adiponectin) was performed at 3-month intervals (baseline, follow-up, final visit). Cardiac events were defined as decrease in left ventricular ejection fraction (LVEF, decrease by 10 % or &lt; 50 %) or increase in global longitudinal strain (GLS, increase by 15 % or &gt; 16 %), as a more sensitive marker of LV function. Results Cardiac deterioration was observed in nine out of 21 patients (event group). While LVEF did not differ significantly between the two groups (event vs no event) at any visit, GLS was significantly higher during follow-up (follow-up: event -16 ± 3.3 % vs no event -18 ± 1.6 %, p = 0.04, final visit: event -16 ± 2.1 % vs no event -19 ± 1.9 %, p = 0.003). NT-proBNP was numerically higher in patients with a cardiac event during all visits, with NT-proBNP negatively correlated with LVEF and MAPSE (both r = -0.33, p = 0.02), whereas GLS (r = 0.40, p = 0.006), TnI (r = 0.44, p = 0.001), and VCAM-1 (r = 0.48, p = 0.003) showed a positive association with NT-proBNP. In comparison, higher VCAM 1 and sST2 concentrations were detected in the event group at both baseline and the final visit, with a significant difference for baseline (VCAM-1: p = 0.02; sST2: p = 0.03). Adiponectin was also lower in patients with a treatment-related event. Thresholds for VCAM 1 &gt; 762 ng/ml and sST2 &gt; 18.7 ng/ml, as detected by ROC analysis, correlated best with the primary endpoint. Conclusion Cardiac events during anti-tumour treatment in patients with breast cancer are relatively common. Inflammatory markers such as VCAM-1 or sST2 were associated with an increased likelihood for occurrence of a treatment-related event, which may therefore hold the promise to better identify patients at high risk.
DOI: 10.5281/zenodo.6881519
title: Specialization indexes of countries for 254 subject categories, by input and by output

description: This is a Supplementary Material of the manuscript "<strong>Measuring and interpreting the differences of the nations’ scientific specialization indexes by output and by input</strong>". The file contains complete data on 199 countries in 254 subject categories.
DOI: 10.5281/zenodo.6881610
title: CMV Debaters Dataset (Review Version)

description: <pre><strong>Analyzing Persuasion Strategies of Debaters on Social Media - Dataset</strong> This dataset contains 3,801 debaters from Reddit, their comment, and their persuasion effectiveness. The debates originate from the subreddit Chage my View and are extracted from the Webis CMV dataset (Al Khatib et al., 2020). The dataset consists of three files in JSON Lines (.jsonl) format ## Content of the Dataset ``` +-- Reddit Debaters | +-- README.md # This information + file format description | +-- debaters.jsonl # Minimal dataset with only the (source) comment text and persuasiveness | +-- debaters-full.jsonl # All debater-level datapoints, computed an retrieved from Reddit | +-- comments.jsonl # All comments and comment-level datapoints for each debater ```</pre>
DOI: 10.5281/zenodo.6881609
title: CMV Debaters Dataset (Review Version)

description: <pre><strong>Analyzing Persuasion Strategies of Debaters on Social Media - Dataset</strong> This dataset contains 3,801 debaters from Reddit, their comment, and their persuasion effectiveness. The debates originate from the subreddit Chage my View and are extracted from the Webis CMV dataset (Al Khatib et al., 2020). The dataset consists of three files in JSON Lines (.jsonl) format ## Content of the Dataset ``` +-- Reddit Debaters | +-- README.md # This information + file format description | +-- debaters.jsonl # Minimal dataset with only the (source) comment text and persuasiveness | +-- debaters-full.jsonl # All debater-level datapoints, computed an retrieved from Reddit | +-- comments.jsonl # All comments and comment-level datapoints for each debater ```</pre>
DOI: 10.5281/zenodo.6782329
title: Systematic review reveals sexually antagonistic knockouts in model organisms data and code

description: R Code and data for manuscript titled "Systematic review reveals sexually antagonistic knockouts in model organisms". Drosophila data is from Ruzicka, F., Hill, M.S., Pennell, T.M., Flis, I., Ingleby, F.C., Mott, R., Fowler, K., Morrow, E.H., Reuter, M., 2019. Genome-wide sexually antagonistic variants reveal long-standing constraints on sexual dimorphism in fruit flies. PLoS Biol. 17, e3000244. https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3000244 Human data is from Harper, J.A., Janicke, T., Morrow, E.H., 2021. Systematic review reveals multiple sexually antagonistic polymorphisms affecting human disease and complex traits. Evolution 75, 3087–3097. https://doi.org/10.1111/evo.14394 https://onlinelibrary.wiley.com/doi/full/10.1111/evo.14394
DOI: 10.5281/zenodo.6782328
title: Systematic review reveals sexually antagonistic knockouts in model organisms data and code

description: R Code and data for manuscript titled "Systematic review reveals sexually antagonistic knockouts in model organisms". Drosophila data is from Ruzicka, F., Hill, M.S., Pennell, T.M., Flis, I., Ingleby, F.C., Mott, R., Fowler, K., Morrow, E.H., Reuter, M., 2019. Genome-wide sexually antagonistic variants reveal long-standing constraints on sexual dimorphism in fruit flies. PLoS Biol. 17, e3000244. https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3000244 Human data is from Harper, J.A., Janicke, T., Morrow, E.H., 2021. Systematic review reveals multiple sexually antagonistic polymorphisms affecting human disease and complex traits. Evolution 75, 3087–3097. https://doi.org/10.1111/evo.14394 https://onlinelibrary.wiley.com/doi/full/10.1111/evo.14394
DOI: 10.5281/zenodo.6325199
title: Habitat Protection Indexes - new monitoring measures for the conservation of threatened marine habitats - Datasets and supporting files

description: The supporting datasets, scripts, and supplementary information for the manuscript, "Habitat Protection Indexes - new monitoring measures for the conservation of threatened marine habitats," are available within this repository. We conduct an analysis on the coverage of protected areas that cover six threatened marine and coastal and developed two indexes, the Local Proportion of Habitat Protected Index and the Global Proportion of Habitat Protected Index, describing the protection of these habitats locally and globally. The habitats considered are the following: cold corals, warm water corals, knolls and seamounts, mangroves, saltmarshes, and seagrasses. The index scores of each jurisdiction are made available for download in the dataset: <em>habitat_protection_indexes_average.csv</em> The habitat specific index scores for each jurisdiction are made available for download in the dataset: <em>habitat_protection_indexes.csv. </em> Column name descriptions are available in the text file: <em>Column_name_descriptions_20220301</em> The scripts used to run the workflow to calculate the indexes, create figures, and calculate statistics for the manuscript are also included. The script <em>01_Workflow sources</em> the first 9 scripts in the <em>scripts</em> folder to calculate the indexes which relies on the functions script within the functions folder. The rest of the scripts in the folder create the figures and calculate the statistics for the manuscript. A readme pdf file is included here to ease with reproducing the workflow, but we strongly suggest to please visit our github (https://github.com/jkumagai96/Marine_Habitat_protection) to reproduce the entire calculation where we provide detailed information on how to run the workflow and package management.
description: The publication can be found on Scientific Data at https://doi.org/10.1038/s41597-022-01296-4. If you have any questions regarding this repository, please reach out to Joy Kumagai at joy.kumagai@senckenberg.de.
DOI: 10.5281/zenodo.4694821
title: Habitat Protection Indexes - new monitoring measures for the conservation of threatened marine habitats - Datasets and supporting files

description: The supporting datasets, scripts, and supplementary information for the manuscript, "Habitat Protection Indexes - new monitoring measures for the conservation of threatened marine habitats," are available within this repository. We conduct an analysis on the coverage of protected areas that cover six threatened marine and coastal and developed two indexes, the Local Proportion of Habitat Protected Index and the Global Proportion of Habitat Protected Index, describing the protection of these habitats locally and globally. The habitats considered are the following: cold corals, warm water corals, knolls and seamounts, mangroves, saltmarshes, and seagrasses. The index scores of each jurisdiction are made available for download in the dataset: <em>habitat_protection_indexes_average.csv</em> The habitat specific index scores for each jurisdiction are made available for download in the dataset: <em>habitat_protection_indexes.csv. </em> Column name descriptions are available in the text file: <em>Column_name_descriptions_20220301</em> The scripts used to run the workflow to calculate the indexes, create figures, and calculate statistics for the manuscript are also included. The script <em>01_Workflow sources</em> the first 9 scripts in the <em>scripts</em> folder to calculate the indexes which relies on the functions script within the functions folder. The rest of the scripts in the folder create the figures and calculate the statistics for the manuscript. A readme pdf file is included here to ease with reproducing the workflow, but we strongly suggest to please visit our github (https://github.com/jkumagai96/Marine_Habitat_protection) to reproduce the entire calculation where we provide detailed information on how to run the workflow and package management.
description: The publication can be found on Scientific Data at https://doi.org/10.1038/s41597-022-01296-4. If you have any questions regarding this repository, please reach out to Joy Kumagai at joy.kumagai@senckenberg.de.
DOI: 10.6084/m9.figshare.20222289.v1
title: Supplementary Material for: Early Autonomic Symptoms Predict Functional Decline in Parkinson’s Disease Independent of Dopaminergic Therapy

description: Introduction: Parkinson’s disease (PD) has variable progression; identifying determinants of functional decline in PD is needed for accurate prognostication. Autonomic symptoms can result from dopaminergic therapy, but may also independently predict functional decline. Methods: The sample included individuals with newly-diagnosed PD in Parkinson’s Progression Markers Initiative. Autonomic symptoms were measured with the Scales-for-Outcomes-in-Parkinson’s-Disease-Autonomic (SCOPA-AUT). Presence/absence of autonomic symptoms for SCOPA-AUT total scale and seven subscales was defined and baseline demographic/clinical data were compared between groups with and without autonomic symptoms. Time-to-functional-dependence, or Schwab-and-England Activities-of-Daily-Living (SE-ADL) ≤70, was compared between groups using hazard models, adjusting for covariates including time-varying levodopa-equivalent daily dosage (LEDD). If a subscale was associated with a significant subhazard ratio (SHR), hazard models for items in that subscale were generated and gender was evaluated as an effect modifier. Results: 399 participants were included. Over a median of 72 months (range 6-84), 91 (22.81%) reached SE-ADL≤70. SCOPA-AUT total/gastrointestinal/urinary/pupillomotor scales were associated with SE-ADL≤70; respective multivariable SHRs (95% CI, p-value) were 1.98 (1.06-3.70, .03), 1.71 (1.04-2.81, .03), 1.94 (1.25-3.01, &lt;.01), 2.56 (1.24-5.31, .01). Individual items in the gastrointestinal and urinary scales drove associations. Urinary scale associations were seen in males only. Conclusions: Symptoms of gastrointestinal, urinary, pupillomotor dysfunction are associated with functional decline risk in PD, independent of dopaminergic therapy. Detailed assessments of autonomic symptomatology should be utilized in studies attempting to refine predictive models of PD progression.
DOI: 10.57745/wwurp6/uhq6wg
title: Bestiaire souterrain.mp4

description: Video Bestiaire en sous-sol, Fete de la Science Sorbonne Université 2020
DOI: 10.5281/zenodo.5770518
title: Example of GenX ORSO file format export

description: An example file produced by GenX when exporting a dataset including model, parameters and statistical analysis. (Data header has been modified as original data did not have metadata.)
DOI: 10.5281/zenodo.5770517
title: Example of GenX ORSO file format export

description: An example file produced by GenX when exporting a dataset including model, parameters and statistical analysis. (Data header has been modified as original data did not have metadata.)
DOI: 10.25375/uct.20256408
title: New Catch-At-Length data obtained since 2018 from trap samples

description: New catch-at-length data have become available for several of the super-areas of the west coast rock lobster fishery. These data, as well as the resulting percent females in the samples, will be used in the 2022 updated assessments.
DOI: 10.25375/uct.20256408.v1
title: New Catch-At-Length data obtained since 2018 from trap samples

description: New catch-at-length data have become available for several of the super-areas of the west coast rock lobster fishery. These data, as well as the resulting percent females in the samples, will be used in the 2022 updated assessments.
DOI: 10.17903/fk2/ef8q6z
title: Δεδομένα Κοινωνικής Εκπροσώπησης και Συλλογικών Διαπραγματεύσεων

description: Η παρούσα συλλογή δεδομένων, αφορά δύο κρίσιμους δείκτες στο πεδίο των συλλογικών εργασιακών σχέσεων: Α) Τη διακύμανση της συνδικαλιστική πυκνότητα κατά την περίοδο 1974-2018, η οποία ορίζεται από τον λόγο των ψηφισάντων μελών των συνδικάτων που υπάγονται σε ΓΣΕΕ και ΑΔΕΔΥ προς τον αριθμό μισθωτών (ιδιωτικού και δημόσιου τομέα αντιστοίχως) κατά την περίοδο αναφοράς. Β) Τον αριθμό, το είδος των Συλλογικών Ρυθμίσεων (Συλλογικές Συμβάσεις Εργασίας και Διαιτητικές Αποφάσεις), τους συμβαλλόμενους, καθώς και κλάδους αναφοράς, κατά την περίοδο 2009-2019.
DOI: 10.48670/moi-00072
title: North Atlantic Chlorophyll (Copernicus-GlobColour) from Satellite Observations: Daily Interpolated (Near Real Time)

description: EU Copernicus Marine Service North Atlantic Chlorophyll (Copernicus-GlobColour) from Satellite Observations: Daily Interpolated (Near Real Time) Product
DOI: 10.48670/moi-00073
title: North Atlantic Surface Chlorophyll Concentration from Satellite observations: monthly

description: EU Copernicus Marine Service North Atlantic Surface Chlorophyll Concentration from Satellite observations: monthly Product
DOI: 10.48670/moi-00074
title: North Altantic Chlorophyll Concentration from Satellite observations (daily average) Reprocessed L4 (ESA-CCI): monthly

description: EU Copernicus Marine Service North Altantic Chlorophyll Concentration from Satellite observations (daily average) Reprocessed L4 (ESA-CCI): monthly Product
DOI: 10.48670/moi-00075
title: North Atlantic Chlorophyll (Copernicus-GlobColour) from Satellite Observations: Daily Interpolated (Reprocessed from 1997)

description: EU Copernicus Marine Service North Atlantic Chlorophyll (Copernicus-GlobColour) from Satellite Observations: Daily Interpolated (Reprocessed from 1997) Product
DOI: 10.48670/moi-00076
title: North Atlantic Remote Sensing Reflectances, Attenuation Coefficient at 490nm, and inherent optical properties from Satellite observations

description: EU Copernicus Marine Service North Atlantic Remote Sensing Reflectances, Attenuation Coefficient at 490nm, and inherent optical properties from Satellite observations Product
DOI: 10.48670/moi-00077
title: North Atlantic Ocean, Ocean Optics Products (daily average) Reprocessed L3 (ESA-CCI)

description: EU Copernicus Marine Service North Atlantic Ocean, Ocean Optics Products (daily average) Reprocessed L3 (ESA-CCI) Product
DOI: 10.48670/moi-00078
title: North Atlantic Attenuation Coefficient at 490nm: monthly

description: EU Copernicus Marine Service North Atlantic Attenuation Coefficient at 490nm: monthly Product
DOI: 10.6084/m9.figshare.19121668
title: Miospores from the Upper Devonian and lowermost Carboniferous strata of the Khoshyeilagh area, northeastern Alborz, Iran

description: Diverse and well-preserved terrestrial palynomorphs occur in the Padeha, Khoshyeilagh, and Mobarak formations in the Khoshyeilagh area, northeastern Alborz, northern Iran. The spore assemblages consist of 36 species belonging to 24 genera. The vertical distribution of index spores allows the erection within these strata of five local biozones (BT, FF, LE, LN, and VI). The data show that assemblages recorded from the Khoshyeilagh section can be correlated with the VCo, LE, LN, and VI Miospore biozones of Europe, Canada, and USA. Many of the palynomorph species, such as <i>Archaeoperisaccus ovalis, Ancyrospora ampulla, Diducites mucronatus</i>, <i>D. versabilis, Grandispora cornuta</i>, <i>G. echinata</i>, <i>Indotriradites explanatus</i>, <i>Retispora lepidophyta</i>, <i>Retusotriletes incohatus</i>, <i>R. phillipsii</i>, <i>Rugospora flexuosa</i>, <i>Teichertospora torquata</i>, <i>Tumulispora malevkensis</i>, <i>Vallatisporites pusillites</i>, <i>Verrucosisporites bulliferus</i>, and <i>Verrucosisporites nitidus</i>, are closely comparable with coeval assemblages recorded from Belgium, Portugal, Canada, North Africa, South America, and North America. This indicates the close relationship of the Iranian Platform to other parts of the northern Gondwana and southern Laurentian domain during this time interval. Moreover, parent plants of the Late Devonian miospores in the Khoshyeilagh area generally belong to herbaceous Class Rhyniopsida (orders: Rhyniales, Trimerophytales), Zosterophyllopsida, and various classes such as, Lycopsida (herbaceous order: Isoetales, Selaginellales, Protolepidodendrales), Progymnospermopsida (Order Archaeopteridales and Aneuropthytales), and Filicopsida. The presence of marine shelly macrofauna (brachiopods and corals) suggest a nearshore depositional environment comprising rivers, fluvial deltas, tidal flats, and lagoons for the Upper Devonian and lowermost Carboniferous deposits studied herein.