DOI: 10.5061/dryad.ns1rn8pwr
title: Data from: Extracellular carbonic anhydrase activity promotes a carbon concentration mechanism in metazoan calcifying cells

description: Many calcifying organisms utilize metabolic CO2 to generate CaCO3 minerals
 to harden their shells and skeletons. Carbonic anhydrases are evolutionary
 ancient enzymes that were proposed to play a key role in the calcification
 process with the underlying mechanisms being little understood. Here we
 used the calcifying primary mesenchyme cells of the sea urchin larva to
 study the role of cytosolic (iCAs) and extracellular carbonic anhydrases
 (eCAs) in the cellular carbon concentration mechanism (CCM). Molecular
 analyses identified iCAs and eCAs in PMCs and highlight the prominent
 expression of a GPI-anchored membrane-bound CA (Cara7). Intracellular pH
 recordings in combination with CO2 pulse experiments demonstrated iCA
 activity in PMCs. iCA activity measurements together with pharmacological
 approaches revealed an opposing contribution of iCAs and eCAs on the CCM.
 H+-selective electrodes were used to demonstrate eCA catalyzed CO2
 hydration rates at the cell surface. Knock-down of Cara7 reduced
 extracellular CO2 hydration rates accompanied by impaired formation of
 specific skeletal segments. Finally, reduced pHi regulatory capacities
 during inhibition and knock-down of Cara7 underline a role of this eCA in
 cellular HCO3- uptake. This work revealed the function of carbonic
 anhydrases in the cellular CCM of a marine calcifying animal.
 Extracellular hydration of metabolic CO2 by Cara7 coupled to HCO3- uptake
 mechanisms mitigates the loss of carbon and reduces the cellular proton
 load during the mineralization process. The findings of this work provide
 insights into the cellular mechanisms of an ancient biological process
 that is capable of utilizing CO2 to generate a versatile construction
 material.
description: # Data from: Extracellular carbonic anhydrase activity promotes a carbon
 concentration mechanism in metazoan calcifying cells
 [https://doi.org/10.5061/dryad.ns1rn8pwr](https://doi.org/10.5061/dryad.ns1rn8pwr) ## Description of the data and file structure ### Figure 1 Phylogenetic analysis and expression patterns of iCAs and eCAs in the sea urchin larva. Expression of iCA Cara2 (C) and eCA Cara7 (D) along the first 72 hpf. ### Figure 2 Extracellular carbonic anhydrase activity is required for the calcification of the larval skeleton. (B) Biometric analyses of the post-oral rod after treatment with different concentrations of AZM and Dex-AZM. Asterisks indicate significant differences compared to controls with **p&lt;0.001 (n = 3, One-Way ANOVA + Post-Hoc Test (Holm-Sidak)). Values are presented as mean ± SEM. (C) Determination of re-calcification rates by measuring the growth rate of the dissolved skeleton under pharmacological inhibition of CA activity by four concentrations (0 µM, 1 µM, 10 µM, 100 µM) of Acetazolamide (AZM). For the controls (0 µM) only the vehicle DMSO was added. Values are presented as mean ± SEM; n = 6, * p&lt;0.05 (One-Way ANOVA + Post-Hoc Test). (D) Re-calcification rates during pharmacological inhibition of extracellular CAs by dextran-bound Acetazolamide (Dex-AZM) at four concentrations (0 µM, 1 µM, 10 µM, 100 µM). Values are presented as mean ± SEM; n = 3, *p&lt;0.05; **p&lt;0.001 (One-Way ANOVA + Post-Hoc Test (Holm-Sidak)) (E) Expression levels of Cara2 (iCA) and Cara7 (eCA) under re-calcifying conditions along the period of three days. Expression levels were normalized to the internal control ElF1a. mean ± SEM; n= 3 ñ 4. ### Figure 3 Intracellular pH recordings in combination with the CO2-pulse method demonstrated iCA activity in Primary mesenchym cells (PMCs) that was decreased under re-calcifying conditions. (A) Intracellular pH (pHi) was measured using the ratiometric pH sensitive dye BCECF-AM. pHi of PMCs was recorded during exposure to out-of-equilibrium (OOE) solution (2.5% CO2, pH 8.0) in the presence of 100 µM AZM (n = 8, mean ± SEM) or DMSO (control, n = 10, mean ± SEM). The rate in pHi change during addition and removal of the OOE solution reflects the hydration and de-hydration speed of CO2 within the cell. (B) The recovery rate from the 2.5% CO2 pulse is inhibited by AZM in a dose-dependent manner with an IC50 value of 7.5 µM reflecting the iCA catalyzed fraction of the de-hydration reaction. Boxplots include single measurements (circles), mean values (crosses), 95th percentiles and standard deviation bars. (C) iCA activity measurements performed with actively re-calcifying larvae. Changes in pHi during exposure to 2.5% CO2 OOE solution were measured in the presence of DMSO (n = 12, mean ± SEM) or 100 µM AZM (n = 12, mean ± SEM). (D) Comparison of recovery rates (pHi units per minute) of untreated and re-calcifying larvae and the inhibitory effects of 100 µM AZM compared to DMSO controls. Values are presented as mean ± SEM and statistical analyses were performed using Student¥s t-test with *p&lt;0.05; **p&lt;0.001; ***p&lt;0.0001). ### Figure 4 Morpholino knock-down of Cara7 (B) Western blot analysis of Cara7 protein abundance in 3 doff (days post fertilization) larvae injected with scramble or Cara7 Morpholino (MO) at a concentration of 200 µM. The Cara7 protein abundance was normalized to total protein concentrations. Values are presented as mean ± SEM (n = 3-4). Student¥s t-tests *p&lt;0.05. (C) The length of the post-oral rod is predominantly affected in Cara7 morphants. Relative post-oral rod length as a function of different Morpholino concentrations. Morpholino injections were repeated three to five times and individual measurements (n = 12-44) are presented including mean ± SEM. ### Figure 5 pH selective micro-electrode measurements demonstrated that Cara7 is responsible for extracellular CA activity at the surface of PMCs. Illustration of the principle used in the stop-flow method for the measurement of eCA activity using H+ selective micro-electrodes. Upon stopping the flow of the OOE solution (2.5% CO2 / pH 7.8) surface pH decreased due to the relaxation of the solution towards the formation of HCO3 and H+. The speed of CO2 hydration depends on the catalytic activity of CAs and was used to determine eCA activity. (C) Comparison of OOE relaxation kinetics in the bulk solution (background) and at the cell surface in the presence of 0.1% DMSO or 100 µM of AZM. (D) Presentation of the average (n= 18) hydration kinetics at the cell surface in the presence of DMSO or AZM after subtraction of the background CO2 hydration curve. Here the increase of H+ at any time point is depicted, compared between control conditions (DMSO) and CA inhibition (AZM). (E) Dependence of the rate constant of the pH change on the presence of extracellular CA activity. We obtained K?[H+] ñvalues from non-linear least-squares curve fits like those presented in (C, F) demonstrating increased AZM-sensitive CO2 hydration at the cell surface of PMCs (n = 18). (F) Comparison of OOE relaxation kinetics in the bulk solution (background) and at the cell surface of Cara7 morphants and scramble morpholino injected larvae. (G) Presentation of the average (n = 9-12) hydration kinetics at the cell surface in scramble morpholino injected or Cara7 knock-down larvae after subtraction of the background CO2 hydration curve. (H) Comparison of the rate constant of the pH change on the presence of extracellular CA activity in scramble and Cara7 morpholino injected larvae.; One-Way ANOVA + Post-Hoc Test (Holm-Sidak) ### Figure 6 Dependence of pHi regulatory capacities on eCA activity and proposed carbon concentration mechanism (CCM) for PMCs. (A) pHi regulatory capacities of PMCs in control larvae investigated by the ammonia pre-pulse method. Average traces of pHi recordings with 0.1% DMSO (n = 8) or 100 µM dextran-bound AZM (Dex-AZM) (n = 6) in the perfusion solution during the wash-out period. (B) pHi regulatory capacities of control (DMSO) and Dex-AZM treated PMCs (mean ± SEM; n = 6-8; Student¥s t-test *p &lt; 0.05). (C) Average traces of pHi recordings in PMCs of Cara7 or scramble morpholino injected larvae at 3-4dpf. (D) Comparison of pHi regulatory capacities in larvae injected with scramble MO or with Cara7 MO at a concentration of 200 µM. (mean ± SEM; n = 10-11; Student¥s t-test * p &lt; 0.05). (E) Average traces of pHi recordings with 0.1% DMSO (n = 8) or 100 µM dextran-bound AZM (Dex-AZM) (n = 8) in the absence of HCO3- (0 mM Bicarbonate (BIC)) in the artificial seawater (ASW) solution during the wash-out period. (F) pHi regulatory capacities of control (DMSO) and Dex-AZM treated PMCs (mean ± SEM; n = 8; Student¥s t-test p &lt; 0.05) in the absence of HCO3- during the washout period.