cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24115368
title: Plant RNA-Image Repository

description: Together with the Agriculture University, we compiled a database of plant images and omics data. The dataset contains images of four distinct plant maladies, including powdery mildew, rust, leaf spot, and blight, as well as gene expression and metabolite data. Using a high resolution camera in a controlled environment at the facility of the Agriculture University of Peshawar, we captured 8,000 images of plants, with 2,000 images for each disease type. Each image was labeled with the disease type corresponding to it. The images were preprocessed by resizing them to 224x224 pixels and standardizing the pixel values. The dataset was divided into 70:15:15 training, validation, and testing sets, correspondingly. In addition to collecting images of the same plants, we also collected gene expression and metabolite data. We extracted RNA from the plant leaves using a commercial reagent and sequenced it on an Illumina HiSeq 4000 platform. The average length of the 100 million paired-end readings obtained was 150 base pairs. The unprocessed reads were trimmed with Trimmomatic and aligned with STAR against the reference genome. We counted the number of reads that mapped to each gene using featureCounts, and then identified differentially expressed genes between healthy and diseased plants using the DESeq2 package in R. Using gas chromatography-mass spectrometry (GC-MS), we gathered additional metabolite information. Using a methanol-water extraction protocol, we extracted metabolites from the plant leaves and analyzed the extracts using GC-MS. We obtained 500 metabolite characteristics, including amino acids, organic acids, and sugars.<br>If you use the dataset mentioned here, please make sure to give credit to the researchers by citing their paper titled 'Deep Learning for Plant Bioinformatics: An Explainable Gradient-Based Approach for Disease Detection.'ReferenceShoaib, M., Shah, B., Sayed, N., Ali, F., Ullah, R., & Hussain, I. (2023). Deep learning for plant bioinformatics: an explainable gradient-based approach for disease detection. <i>Frontiers in Plant Science</i>, <i>14</i>(October), 1–17. https://doi.org/10.3389/fpls.2023.1283235<br>
DOI: 10.6084/m9.figshare.24165025
title: Additional file 1 of Allotaxonometry and rank-turbulence divergence: a universal instrument for comparing complex systems

description: (ZIP 238.7 MB)
DOI: 10.6084/m9.figshare.24089192.v1
title: Additional file 1 of Transcriptome-wide association study identifies new susceptibility genes and pathways for spondyloarthritis

description: Additional file 1: Risk Loci in GWAS Dataset of SpA.
DOI: 10.6084/m9.figshare.24089192
title: Additional file 1 of Transcriptome-wide association study identifies new susceptibility genes and pathways for spondyloarthritis

description: Additional file 1: Risk Loci in GWAS Dataset of SpA.
DOI: 10.6084/m9.figshare.24416129.v1
title: Additional file 1 of Precipitation pattern changed the content of non-structural carbohydrates components in different organs of Artemisia ordosica

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24416129
title: Additional file 1 of Precipitation pattern changed the content of non-structural carbohydrates components in different organs of Artemisia ordosica

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24587955
title: DACE data

description: DACE data
DOI: 10.6084/m9.figshare.24587955.v1
title: DACE data

description: DACE data
DOI: 10.6084/m9.figshare.24104327.v1
title: Additional file 3 of ChromGene: gene-based modeling of epigenomic data

description: Additional file 3. ChromGene assignments. An Excel spreadsheet containing the ChromGene assignments for the 127 cell types. These assignments are reported in four tabs, two based on the hg19 assembly and gene annotation (ENSEMBL v65/GENCODE v10) and two based on an hg38-based gene annotation (GENCODE v41) lifted over to hg19. For each assembly, we provide one tab using the Roadmap Epigenomics Consortium “Standardized Epigenome names” for designating the cell type, and another tab using the Epigenome IDs (EIDs) [1]. Each row after the header row corresponds to one gene. The first five columns from left to right are the chromosome of the gene, the left-most coordinate of the gene, the right-most coordinate of the gene, the gene symbol, and strand of the gene. The remaining 127 columns correspond to different cell types, and the entries to ChromGene assignments.
DOI: 10.6084/m9.figshare.24303323
title: Additional file 2 of CanISO: a database of genomic and transcriptomic variations in domestic dog (Canis lupus familiaris)

description: Additional file 2.
DOI: 10.34740/kaggle/dsv/7000391
title: Karate_DSL_api_sec_llama_dataset
DOI: 10.6084/m9.figshare.24303323.v1
title: Additional file 2 of CanISO: a database of genomic and transcriptomic variations in domestic dog (Canis lupus familiaris)

description: Additional file 2.
DOI: 10.6084/m9.figshare.24130241.v1
title: Additional file 1 of Detecting natural selection in trait-trait coevolution

description: Additional file 1. Data S1.
DOI: 10.34740/kaggle/ds/4024264
title: 📝 320K LinkedIn App Google Store Reviews
DOI: 10.6084/m9.figshare.24130119.v1
title: Additional file 2 of Specific pathway abundances in the neonatal calf faecal microbiome are associated with susceptibility to Cryptosporidium parvum infection: a metagenomic analysis

description: Additional file 2. Taxonomic Functional Profiling Custom Script.
DOI: 10.5281/zenodo.10156010
title: ARTISTIC CONCEPT THE IMAGE OF "RUSTAM AND SOKHRAB" IN THE      "SHAHNAME" FERDOWSI(MYTHOLOGICAL AND HISTORICAL ASPECTS)
DOI: 10.5281/zenodo.10156011
title: ARTISTIC CONCEPT THE IMAGE OF "RUSTAM AND SOKHRAB" IN THE      "SHAHNAME" FERDOWSI(MYTHOLOGICAL AND HISTORICAL ASPECTS)
DOI: 10.34740/kaggle/dsv/7000427
title: Karate DSL API Security LLama chat Dataset
DOI: 10.6084/m9.figshare.24136229
title: Additional file 2 of A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)

description: Additional file 2.
DOI: 10.6084/m9.figshare.24136232.v1
title: Additional file 3 of A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)

description: Additional file 3.
DOI: 10.6084/m9.figshare.24136229.v1
title: Additional file 2 of A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)

description: Additional file 2.
DOI: 10.6084/m9.figshare.24136232
title: Additional file 3 of A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)

description: Additional file 3.
DOI: 10.5281/zenodo.10156013
title: AVTOMOBILLARDA QO'LLANILADIGAN YELIM VA GERMETIKLAR.
DOI: 10.5281/zenodo.10156014
title: AVTOMOBILLARDA QO'LLANILADIGAN YELIM VA GERMETIKLAR.
DOI: 10.5281/zenodo.10156019
title: YOSH YENGIL ATLETIKACHILARNI MA'NAVIY JIHATDAN TARBIYALASH
DOI: 10.5281/zenodo.10156020
title: YOSH YENGIL ATLETIKACHILARNI MA'NAVIY JIHATDAN TARBIYALASH
DOI: 10.5281/zenodo.10156021
title: INTEGRAL ASSESSMENT OF PHYSICAL DEVELOPMENT OF STUDENTS OF THE FACULTY OF PHYSICAL EDUCATION NAMU
DOI: 10.5281/zenodo.10156022
title: INTEGRAL ASSESSMENT OF PHYSICAL DEVELOPMENT OF STUDENTS OF THE FACULTY OF PHYSICAL EDUCATION NAMU
DOI: 10.6084/m9.figshare.24116551
title: Additional file 1 of Prevalence of adenoid hypertrophy among 12-year-old children and its association with craniofacial characteristics: a cross-sectional study

description: Additional file 1. Complete raw dataset of the measurements used for the analysis presented in the study.
DOI: 10.6084/m9.figshare.24054286
title: Additional file 2 of Comparison of cognitive functional therapy and movement system impairment treatment in chronic low back pain patients: a randomized controlled trial

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.24116551.v1
title: Additional file 1 of Prevalence of adenoid hypertrophy among 12-year-old children and its association with craniofacial characteristics: a cross-sectional study

description: Additional file 1. Complete raw dataset of the measurements used for the analysis presented in the study.
DOI: 10.6084/m9.figshare.24054286.v1
title: Additional file 2 of Comparison of cognitive functional therapy and movement system impairment treatment in chronic low back pain patients: a randomized controlled trial

description: Supplementary Material 2
DOI: 10.5281/zenodo.10156027
title: SOLIQQA OID QONUNCHILIK IJROSI USTIDAN PROKUROR NAZORATI.
DOI: 10.5281/zenodo.10156028
title: SOLIQQA OID QONUNCHILIK IJROSI USTIDAN PROKUROR NAZORATI.
DOI: 10.15151/esrf-es-1347515851
title: In-situ study of the giant magnetostriction of Terfenol-D

description: We propose to characterize “in-situ” the large strain produced under an applied magnetic field by high-resolution synchrotron x-ray diffraction in Tb0.3Dy0.7Fe2 alloy as a function of the temperature. Our preliminary results already showed a spectacular magnetic field induced phase transition. High resolution will permit to determine the structural origin of the magnetostriction in this material in the temperature magnetic field space.
DOI: 10.15151/esrf-es-1346211120
title: Metal imaging in Gram-negative bacteria: insights into resistance and mode of action of antibiotics

description: Understanding antimicrobial resistance in bacteria is mandatory to develop new antibiotic therapies. We could show that the anti-infective nitroxoline (Nx) is active against multidrug-resistant bacteria. Nx acts as an ionophore by transporting metals into the bacterial cell, but the mode of action remain largely unknown. Our previous results indicate increase of Mn, Zn and Fe upon Nx treatment as well as Cu accumulation in the periplasm, suggesting perturbation of metal homeostasis by Nx. Furthermore, X-ray fluorescence (XRF) imaging indicates storage of Fe in clusters in untreated E. coli cells. Storage of metals in highly organized intracellular compartments is known to provide resistance against metal stress [1]. We hypothesize that Nx disrupts organization of metal clusters and apply for 2D and 3D XRF nano-imaging to decipher mode of action and resistance mechanism by analyzing Nx-susceptible and resistance generated E. coli cells.
DOI: 10.5281/zenodo.10156035
title: DEVELOPMENT OF EXPERIMENTAL COMPETENCE OF A FUTURE PHYSICS
DOI: 10.5281/zenodo.10156036
title: DEVELOPMENT OF EXPERIMENTAL COMPETENCE OF A FUTURE PHYSICS
DOI: 10.6084/m9.figshare.24217520
title: Additional file 2 of Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere

description: Additional file 2: Supplementary Table S1. Number of sequences per sample across the different processing steps. Supplementary Table S2. Relative abundance of bacterial classes. Supplementary Table S3. Alpha diversity indexes across samples. Supplementary Table S4. PERMANOVA test of Bray-Curtis dissimilarities across samples. Supplementary Table S5. Community assembly processes per community state, environment or inoculation. Supplementary Table S6. Differential abundance of ASVs between all conditions tested. Supplementary Table S7. Top five most abundant Pseudomonas ASVs, closest relatives and 16S rRNA sequence similarity to isolated strains. Supplementary Table S8. CFUs and competition index between the three Pseudomonas used in this work.
DOI: 10.6084/m9.figshare.23949745.v1
title: Additional file 7 of Prenatal and childhood exposure to per-/polyfluoroalkyl substances (PFASs) and its associations with childhood overweight and/or obesity: a systematic review with meta-analyses

description: Additional file 7: Supplementary Table S05. Data extracted transformed using the conversion factor developed
DOI: 10.34820/fk2/gw8jiv/dlnwra
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