cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6565573
title: EPTGODD-WHU: Ensemble Precipitation and Temperature from CMIP6 GCMs optimized by OLS-DT-DNN methods integration (1850-2100)

description: This monthly global climate dataset EPTGODD-WHU (precipitation and mean temperature variables with grid size of 0.5°×0.5°) was ensembled from 16 selected CMIP6 GCMs. The published dataset was optimized by OLS (Ordinary Linear Square)-DT (Decision Tree)-DNN (Deep Neural Network) methods integration. The CF (Climate and Forecast) v1.6 was employed as the guideline for NetCDF4 format. The periods of temperature files can be divided into historical (1850-1900) and future (2015-2100) periods. For precipitation, this product provides future (2015-2100) period. Three future scenarios (SSP1-2.6, SSP2-4.5 and SSP5-8.5) were selected for both variables. The units of this dataset are degrees Celsius and mm/month for temperature and precipitation, respectively. Each NetCDF4 file in this dataset includes three dimensions (time, latitude (-89.75°N to 89.75°N) and longitude (-179.75°E to 179.75°E)).
DOI: 10.5281/zenodo.6565587
title: PONE-D-21-35126_dataset

description: Dataset for article ID PONE-D-21-35126.
DOI: 10.5281/zenodo.6565586
title: PONE-D-21-35126_dataset

description: Dataset for article ID PONE-D-21-35126.
DOI: 10.5517/ccdc.csd.cc2bgrj3
title: CCDC 2159135: Experimental Crystal Structure Determination

description: Related Article: Simin Zhuo, Weiping Wu, Yingle Liu, Like Zou, Yu Wu, Lot Botha, Abhinav Kumar, Mohd Afzal, Abdullah Alarifi|2022|J.Mol.Struct.|1264|133304|doi:10.1016/j.molstruc.2022.133304
DOI: 10.5517/ccdc.csd.cc2bh949
title: CCDC 2159650: Experimental Crystal Structure Determination

description: Related Article: Tanguy Jousselin-Oba, Masashi Mamada, Karen Wright, Jérôme Marrot, Chihaya Adachi, Abderrahim Yassar, Michel Frigoli|2022|J.Mater.Chem.C|10|7717|doi:10.1039/D2TC01324J
DOI: 10.5517/ccdc.csd.cc2bh95b
title: CCDC 2159651: Experimental Crystal Structure Determination

description: Related Article: Tanguy Jousselin-Oba, Masashi Mamada, Karen Wright, Jérôme Marrot, Chihaya Adachi, Abderrahim Yassar, Michel Frigoli|2022|J.Mater.Chem.C|10|7717|doi:10.1039/D2TC01324J
DOI: 10.5517/ccdc.csd.cc2bh96c
title: CCDC 2159652: Experimental Crystal Structure Determination

description: Related Article: Tanguy Jousselin-Oba, Masashi Mamada, Karen Wright, Jérôme Marrot, Chihaya Adachi, Abderrahim Yassar, Michel Frigoli|2022|J.Mater.Chem.C|10|7717|doi:10.1039/D2TC01324J
DOI: 10.5517/ccdc.csd.cc29cm0b
title: CCDC 2126321: Experimental Crystal Structure Determination

description: Related Article: Zhen-Wen Wang, Qing Zhao, Chong-An Chen, Jun-Jun Sun, Hongjin Lv, Guo-Yu Yang|2022|Inorg.Chem.|61|7477|doi:10.1021/acs.inorgchem.2c00575
DOI: 10.5281/zenodo.6565046
title: Sensitization of FOLFOX-resistant colorectal cancer cells via the modulation of a novel pathway involving protein phosphatase 2A

description: The treatment of colorectal cancer (CRC) with FOLFOX shows some efficacy, but these tumors quickly develop resistance to this treatment. We have observed an increased phosphorylation of AKT1/mTOR/4EBP1 and levels of p21 in FOLFOX-resistant CRC cells. We have identified a small molecule, NSC49L, that stimulates protein phosphatase 2A (PP2A) activity, downregulates the AKT1/mTOR/4EBP1-axis, and inhibits p21 translation. We have provided evidence that NSC49L- and TRAIL-mediated sensitization is synergistically induced in p21-knockdown CRC cells, which is reversed in p21-overexpressing cells. p21 binds with procaspase 3 and prevents activation of caspase 3. We have shown that TRAIL induces apoptosis through the activation of caspase 3 by NSC49L-mediated downregulation of p21 translation, and thereby cleavage of procaspase 3 into caspase 3. NSC49L does not affect global protein synthesis. These studies provide a mechanistic understanding of NSC49L as a PP2A agonist, and how its combination with TRAIL sensitizes FOLFOX-resistant CRC cells.
DOI: 10.5281/zenodo.6565045
title: Sensitization of FOLFOX-resistant colorectal cancer cells via the modulation of a novel pathway involving protein phosphatase 2A

description: The treatment of colorectal cancer (CRC) with FOLFOX shows some efficacy, but these tumors quickly develop resistance to this treatment. We have observed an increased phosphorylation of AKT1/mTOR/4EBP1 and levels of p21 in FOLFOX-resistant CRC cells. We have identified a small molecule, NSC49L, that stimulates protein phosphatase 2A (PP2A) activity, downregulates the AKT1/mTOR/4EBP1-axis, and inhibits p21 translation. We have provided evidence that NSC49L- and TRAIL-mediated sensitization is synergistically induced in p21-knockdown CRC cells, which is reversed in p21-overexpressing cells. p21 binds with procaspase 3 and prevents activation of caspase 3. We have shown that TRAIL induces apoptosis through the activation of caspase 3 by NSC49L-mediated downregulation of p21 translation, and thereby cleavage of procaspase 3 into caspase 3. NSC49L does not affect global protein synthesis. These studies provide a mechanistic understanding of NSC49L as a PP2A agonist, and how its combination with TRAIL sensitizes FOLFOX-resistant CRC cells.
DOI: 10.18112/openneuro.ds003876.v1.0.0
title: Epilepsy-iEEG-Interictal-Multicenter-Dataset
DOI: 10.5281/zenodo.6574973
title: Field Retrofit and Testing of a Corroded Metal Culvert Using GFRP

description: One of the current pressing problem for all DOTs is the corrosion-oriented deterioration of the existing metal culverts. These metal culverts typically are designed for a life of 50 years. However, corrosion is making them last no longer than 30years. Here we propose use of Glass Fiber Reinforced Polymers (GFRP) pipe section as a fit-in GFRP profile liner for complete repair and rehabilitation of the corroded metal culvert with an expected life of 75 years. This is mainly because of the corrosion free nature of the GFRP material. In the current study, the design method for using glass fiber-reinforced polymer (GFRP) slip liner to retrofit CMP culvert is presented. Furthermore, this report presents field implementation of retrofitting of a 24 in corroded corrugated metal pipe embedded that is 25 ft span and buried below 18 of soil. The corroded corrugated metal pipe was retrofitted with a 22 in diameter GFRP slip liner. Load testing before and after the retrofitting proves the efficiency of the proposed retrofitting system and its ability to extend the service life of the retrofitted pipe.
description: Tran-SET Project: 20STUNM30
DOI: 10.5281/zenodo.6574972
title: Field Retrofit and Testing of a Corroded Metal Culvert Using GFRP

description: One of the current pressing problem for all DOTs is the corrosion-oriented deterioration of the existing metal culverts. These metal culverts typically are designed for a life of 50 years. However, corrosion is making them last no longer than 30years. Here we propose use of Glass Fiber Reinforced Polymers (GFRP) pipe section as a fit-in GFRP profile liner for complete repair and rehabilitation of the corroded metal culvert with an expected life of 75 years. This is mainly because of the corrosion free nature of the GFRP material. In the current study, the design method for using glass fiber-reinforced polymer (GFRP) slip liner to retrofit CMP culvert is presented. Furthermore, this report presents field implementation of retrofitting of a 24 in corroded corrugated metal pipe embedded that is 25 ft span and buried below 18 of soil. The corroded corrugated metal pipe was retrofitted with a 22 in diameter GFRP slip liner. Load testing before and after the retrofitting proves the efficiency of the proposed retrofitting system and its ability to extend the service life of the retrofitted pipe.
description: Tran-SET Project: 20STUNM30
DOI: 10.15482/usda.adc/1526466
title: Soil Water Content Data for The Bushland, Texas, Winter Wheat Experiments

description: This dataset contains soil water content data developed from neutron probe readings taken in access tubes in two of the four large, precision weighing lysimeters and in the fields surrounding each lysimeter that were planted to winter wheat at the USDA-ARS Conservation and Production Laboratory (CPRL), Soil and Water Management Research Unit (SWMRU), Bushland, Texas (Lat. 35.186714°, Long. -102.094189°, elevation 1170 m above MSL) beginning in 1989. Data in each spreadsheet are for one winter wheat growing season, either 1989-1990, 1991-1992, or 1992-1993. Other readings taken in those years for other crops are reported elsewhere. Data for the 1989-1990 season and the 1992-1993 season are from the northwest (NW) and southwest (SW) weighing lysimeters and surrounding fields. Data for the 1991-1992 season are from the northeast (NE) and southeast (SE) weighing lysimeters and surrounding fields. Readings were taken periodically with a field-calibrated neutron probe at depths from 10 cm to 230 cm (maximum of 190 cm depth in the lysimeters) in 20-cm depth increments. Periods between readings were typically one to two weeks, sometimes longer according to experimental design and need for data. Field calibrations in the Pullman soil series were done every few years. Calibrations typically produced a regression equation with RMSE &lt;= 0.01 m3 m-3 (e.g., Evett and Steiner, 1995). Data were used to guide irrigation scheduling to achieve full or deficit irrigation as required by the experimental design. Data may be used to calculate the soil profile water content in mm of water from the surface to the maximum depth of reading. Profile water content differences between reading times in the same access tube are considered the change in soil water storage during the period in question and may be used to compute evapotranspiration (ET) using the soil water balance equation: ET = (change in storage + P + I + F + R, where P is precipitation during the period, I is irrigation during the period, F is soil water flux (drainage) out of the bottom of the soil profile during the period, and R is the sum of runon and runoff during the period. Typically, R is taken as zero because the fields were furrow diked to prevent runon and runoff during most of each growing season.
DOI: 10.5281/zenodo.6574929
title: Macheiramphus alcinus decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6574928
title: Macheiramphus alcinus decontaminated FSCR

description: .
DOI: 10.15472/z8hr82
title: Lista de fauna y flora presente en el humedal Chicualí, departamento del Tolima

description: Los humedales sirven para mitigar los impactos generados por el ciclo hidrológico de una región y, paralelamente, proveen de hábitat a distintos organismos, incluyendo aquellas especies que recurren a la migración como estrategia adaptativa. Proveen de hábitat, alimento, refugio, y áreas de crianza y reproducción a un elevado número de especies de peces, aves, anfibios, reptiles, mamíferos e invertebrados. Son reconocidos por su alto nivel de endemismos, en particular de peces e invertebrados, por su fauna altamente especializada y por ser refugio de una gran diversidad de especies de aves migratorias. Los humedales tienen también un papel ecológico muy importante en el control de la erosión, la sedimentación y las inundaciones; en el abastecimiento y depuración del agua, y en el mantenimiento de pesquerías. En la actualidad estos sistemas han reducido su extensión considerablemente debido al drenado y relleno de sus áreas para diferentes usos (Aguilar, 2003).
description: En el departamento del Tolima se registran como los humedales más importantes 300 lagunas de cordillera, de origen glaciar, localizadas en la cordillera central en áreas de los Parques Nacionales Naturales y numerosas lagunas y sistemas de humedales en las zonas bajas. A pesar de esta variedad de humedales en el departamento del Tolima solo se han realizado evaluaciones iniciales de los humedales ubicados en el Parque Natural Nacional Los Nevados y en su área amortiguadora.
description: Teniendo en cuenta lo anterior y consciente de la importancia de los humedales, de la fauna y flora que los caracteriza, la Corporación Autónoma del Tolima CORTOLIMA y el Grupo de Investigación en Zoología (GIZ) de la Universidad del Tolima, han considerado muy relevante desarrollar el proyecto de estudio de nueve humedales ubicados en las zonas bajas y altas del departamento del Tolima cuyo objetivo es la caracterización de la fauna y flora presente en ellos y generar la línea base para plantear el Plan de Manejo para su conservación.
description: En un esfuerzo de monitorear y documentar la biodiversidad presente en los humedales del Tolima, se muestreó en el año 2016, la fauna y flora presente en el humedal Chicualí, jurisdicción del municipio de San Luis. En total, se listan 39 especies correspondientes a tres mamíferos, cuatro herpetos y 32 plantas.
DOI: 10.6073/pasta/85348706ff48588b2b3262111c22c63e
title: Plant above and belowground biomass across an N fertilization gradient after 13 years of fertilization:Nutrient Network. A cross-site investigation of bottom-up control over herbaceous plant community dynamics and ecosystem function

description: This experiment is one implementation of a globally distributed experiment, known as the Nutrient Network. At Cedar Creek, as in over 70 other sites in grasslands around the world, the experiment aims to describe impacts of increased nutrients (nitrogen, phosphorus, potassium, sulfur and other metals) and decreased herbivory (removal of mammals by fencing). Two overarching questions are being explored with these manipulations: 1. To what extent are plant production and diversity co-limited by multiple nutrients in herbaceous-dominated communities? 2. Under what conditions do grazers or fertilization control plant biomass, diversity, and composition? By utilizing identical protocols at diverse grassland sites around the world, NutNet aims to uncover both the generalities in ecosystem functioning, and the contingencies or differences which can obscure those common mechanisms. In addition to the standard NutNet protocol, e247 includes an additional low Nitrogen gradient (1 gram Nitrogen per meter squared per year and 5 grams Nitrogen per meter squared per year in addition to the standard 10 grams Nitrogen per meter squared per year).
DOI: 10.6073/pasta/ff00b3d3fe927098df8d0d03403be293
title: Net ecosystem exchange measurements throughout the 2020 growing season across an N fertilization gradient:Nutrient Network. A cross-site investigation of bottom-up control over herbaceous plant community dynamics and ecosystem function.

description: This experiment is one implementation of a globally distributed experiment, known as the Nutrient Network. At Cedar Creek, as in over 70 other sites in grasslands around the world, the experiment aims to describe impacts of increased nutrients (nitrogen, phosphorus, potassium, sulfur and other metals) and decreased herbivory (removal of mammals by fencing). Two overarching questions are being explored with these manipulations: 1. To what extent are plant production and diversity co-limited by multiple nutrients in herbaceous-dominated communities? 2. Under what conditions do grazers or fertilization control plant biomass, diversity, and composition? By utilizing identical protocols at diverse grassland sites around the world, NutNet aims to uncover both the generalities in ecosystem functioning, and the contingencies or differences which can obscure those common mechanisms. In addition to the standard NutNet protocol, e247 includes an additional low Nitrogen gradient (1 gram Nitrogen per meter squared per year and 5 grams Nitrogen per meter squared per year in addition to the standard 10 grams Nitrogen per meter squared per year).
DOI: 10.6073/pasta/e731badf4f4453ccc3c408bf2893d72c
title: In situ soil respirations throughout the 2020 growing season across an N fertilization gradient:Nutrient Network. A cross-site investigation of bottom-up control over herbaceous plant community dynamics and ecosystem function.

description: This experiment is one implementation of a globally distributed experiment, known as the Nutrient Network. At Cedar Creek, as in over 70 other sites in grasslands around the world, the experiment aims to describe impacts of increased nutrients (nitrogen, phosphorus, potassium, sulfur and other metals) and decreased herbivory (removal of mammals by fencing). Two overarching questions are being explored with these manipulations: 1. To what extent are plant production and diversity co-limited by multiple nutrients in herbaceous-dominated communities? 2. Under what conditions do grazers or fertilization control plant biomass, diversity, and composition? By utilizing identical protocols at diverse grassland sites around the world, NutNet aims to uncover both the generalities in ecosystem functioning, and the contingencies or differences which can obscure those common mechanisms. In addition to the standard NutNet protocol, e247 includes an additional low Nitrogen gradient (1 gram Nitrogen per meter squared per year and 5 grams Nitrogen per meter squared per year in addition to the standard 10 grams Nitrogen per meter squared per year).
DOI: 10.6084/m9.figshare.19835527.v1
title: MHV Nsp3 model docked into cryo-ET density

description: MHV Nsp3 model docked into cryo-ET density (EMD 11514, from Wolff G, et al, Science <strong>369</strong>:1395–1398. doi:10.1126/SCIENCE.ABD3629. Generated by Peter Stogios, University of Toronto.
DOI: 10.6073/pasta/af991c26bace5af8d4b3bb66d7b18af7
title: Modeling dataset: Long-term Change in Metabolism Phenology across North-Temperate Lakes, Wisconsin, USA 1979-2019

description: This dataset includes model configurations, scripts and outputs to process and recreate the outputs from Ladwig et al. (2021): Long-term Change in Metabolism Phenology across North-Temperate Lakes. The provided scripts will process the input data from various sources, as well as recreate the figures from the manuscript. Further, all output data from the metabolism models of Allequash, Big Muskellunge, Crystal, Fish, Mendota, Monona, Sparkling and Trout are included.
DOI: 10.6073/pasta/fb60afe5bbed735f8ca2316c1ca38e4f
title: North Temperate Lakes LTER Northern Highland Lake District Bathymetry

description: This data set represents the bathymetry of the seven NTL-LTER primary study lakes in the Northern Highland Lake District (aka Trout Lake Region). Bathymetry is encoded as vector contours with a varying contour interval depending on the depth of the lake.
DOI: 10.6084/m9.figshare.19835527
title: Nsp3 model docked into cryo-ET density

description: Nsp3 model docked into cryo-ET density (EMD 11514, from Wolff G, et al, Science <strong>369</strong>:1395–1398. doi:10.1126/SCIENCE.ABD3629. Generated by Peter Stogios, University of Toronto.
DOI: 10.6084/m9.figshare.19835527.v3
title: Nsp3 model docked into cryo-ET density

description: Nsp3 model docked into cryo-ET density (EMD 11514, from Wolff G, et al, Science <strong>369</strong>:1395–1398. doi:10.1126/SCIENCE.ABD3629. Generated by Peter Stogios, University of Toronto.
DOI: 10.6084/m9.figshare.19835527.v2
title: Nsp3 model docked into cryo-ET density

description: Nsp3 model docked into cryo-ET density (EMD 11514, from Wolff G, et al, Science <strong>369</strong>:1395–1398. doi:10.1126/SCIENCE.ABD3629. Generated by Peter Stogios, University of Toronto.
DOI: 10.6073/pasta/12ef61e0ca951d92aed76db57aa8bb7b
title: Data on specialist and generalist herbivory, environmental variation, and phytochemical similarity from the Atlantic Rainforest of Brazil: 2013-2014

description: What: These are data on specialist and generalist herbivory from naturally occurring Piper plants as well as environmental data collected in 10 m diameter plots across sites in the Atlantic Rainforest of Brazil. Data also include chemical similarity calculated as the Morisita similarity index for species in a given plot and chemical modules that demonstrate classes of compounds that group together and influence herbivory. Why: Data were collected to understand factors that influence herbivory and tropical forest richness with a particular focus on secondary chemistry metabolomics. Where: Field sites include São Bento de Sapucaí (-22.8758, -45.8581), Parque Nacional de Itatiaia (-22.3698, -44.6285), Parque Estadual de Intervales (-24.3088, -48.2736), and Parque Estadual de Serra do Mar - Núcleo Pincinguaba (-23.6200, -46.7222). When: Data were collected in the field from Dec 2013 – May 2014. How: Field data were collected in 10 m diameter plots centered on randomly located Piper plants. Chemical data come from 1H-NMR metabolomics.
DOI: 10.6084/m9.figshare.19835536
title: Lackey_Whiteman_Ecology_2022_data

description: Data sets associated with Ecology manuscript ECY22-0347 . Data were collected from a mesocosm experiment tracking growth, survival and reproduction of mole salamanders (Ambystoma talpoideum) with 24 six-foot diameter outdoor tanks: 12 warmed with aquarium heaters, 12 unwarmed from May to November 2016 in Murray, Kentucky, USA.
DOI: 10.5281/zenodo.6574162
title: Thesis: Supplementary Tables and reports

description: Contains Supplementary information for my Thesis Files: model_perfs_and_motifs_top5_annot.mht: MHTML table containing top5 motifs, B1H alignments and dataset quality annotations along with other information. Download and open in Google Chrome browser all_reports.tar.gz : All TF Modisco reports bundled together which are linked in the Table as a standalone resource. Contains every motif, submotif , motif hit distribution with respect to the peak summits and alignments to B1H recognition-code
DOI: 10.6084/m9.figshare.6097718
title: 2016 ASME, IMECE 2016, Phoenix: "Is the Maturation of Arteriovenous Fistulas a Mechanical or Biological Problem?"

description: Supplementary materials to:<br><br><b>Jodko D.</b>, Obidowski D., Reorowicz P., Jóźwik K., <i>Is the Maturation of Arteriovenous Fistulas a Mechanical or Biological Problem?</i> Proceedings of the ASME International Mechanical Engineering Congress and Exposition, IMECE 2016, 11-17.11.2016, Phoenix, USA, ISBN 978-0-7918-5053-4, DOI: 10.1115/IMECE2016-65655<i> </i><br><br>Changes of parameters recorded in the first 30 s of the arteriovenous fistula maturation process<br>
DOI: 10.6084/m9.figshare.6097718.v5
title: 2016 ASME, IMECE 2016, Phoenix: "Is the Maturation of Arteriovenous Fistulas a Mechanical or Biological Problem?"

description: Supplementary materials to:<br><br><b>Jodko D.</b>, Obidowski D., Reorowicz P., Jóźwik K., <i>Is the Maturation of Arteriovenous Fistulas a Mechanical or Biological Problem?</i> Proceedings of the ASME International Mechanical Engineering Congress and Exposition, IMECE 2016, 11-17.11.2016, Phoenix, USA, ISBN 978-0-7918-5053-4, DOI: 10.1115/IMECE2016-65655<i> </i><br><br>Changes of parameters recorded in the first 30 s of the arteriovenous fistula maturation process<br>
DOI: 10.6084/m9.figshare.6097718.v4
title: ASME 2016; Is the Maturation of Arteriovenous Fistulas a Mechanical or Biological Problem? IMECE 2016, Phoenix: Supplementary materials

description: Supplementary materials to:<br><br><b>Jodko D.</b>, Obidowski D., Reorowicz P., Jóźwik K., <i>Is the Maturation of Arteriovenous Fistulas a Mechanical or Biological Problem?</i> Proceedings of the ASME International Mechanical Engineering Congress and Exposition, IMECE 2016, 11-17.11.2016, Phoenix, USA, ISBN 978-0-7918-5053-4, DOI: 10.1115/IMECE2016-65655<i> </i><br><br>Changes of parameters recorded in the first 30 s of the arteriovenous fistula maturation process<br>
DOI: 10.6084/m9.figshare.19836151
title: Profile-HMMs

description: profile-hmms.tar.gz contains the profile hidden Markov models used in this work. cld.hmm - All Cld proteins cld1.hmm - Lineage 1 Cld cld2.hmm - Lineage 2 Cld PF00174.hmm - Pfam 00174 PF00384.hmm - Pfam 00384 PF00384_PCRA.hmm - A Pfam 00384 subfamily with reductase acitivity
DOI: 10.26180/19836160
title: Participant responses to Round 1 Survey and coded answers

description: This dataset is in response to questions about footwear definitions, naming conventions and when they would be worn.