cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vsp9m7
title: Occurrence Download

description: A dataset containing 2376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-3000.0",
 "Country is Canada",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Peromyscus maniculatus (Wagner, 1845)",
 "Year 1945-2021"
 ]
}

 The dataset includes 2376 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273513-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ctp72x
title: Occurrence Download

description: A dataset containing 100654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pyrgus malvae (Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 100654 records from 544 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066623-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qy0sjc
title: Occurrence Download

description: A dataset containing 116545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Gadus morhua Linnaeus, 1758",
 "TaxonKey is Gadus macrocephalus Tilesius, 1810"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 116545 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009971-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3vg2d
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Falco cherrug J.E.Gray, 1834",
 "Year 1980-2024"
 ]
}

 The dataset includes 41 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066631-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g4cbq3
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Embelia angustifolia (A.DC.) A.DC.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Year is greater than 1945"
 ]
}

 The dataset includes 26 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279374-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csqyj3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Entypus ferruginipennis (Haliday, 1837))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Year is greater than 1945"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279392-200613084148143/datasets/export for details.
DOI: 10.15468/dl.5inqgt
title: Occurrence Download

description: A dataset containing 5475 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Desmarestia aculeata (L.) J.V.Lamour.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5475 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009712-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vxz4n
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Duguetia magnolioidea Maas"
 ]
}

 The dataset includes 33 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157644-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47kfmm
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eriophyton wallichii Benth."
 ]
}

 The dataset includes 310 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066610-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghs2hu
title: Occurrence Download

description: A dataset containing 699 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dichorisandra paranaensis D.Maia, Cervi & Tardivo"
 ]
}

 The dataset includes 699 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157646-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcpsac
title: Occurrence Download

description: A dataset containing 81214 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-76.61041 7.24805,-75.78644 7.24805,-75.78644 8.08098,-76.61041 8.08098,-76.61041 7.24805))",
 "Geometry POLYGON((-76.68182 6.88825,-75.43488 6.88825,-75.43488 8.16256,-76.68182 8.16256,-76.68182 6.88825))"
 ]
 },
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 81214 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252073-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vvrz0
title: Occurrence Download

description: A dataset containing 554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhincodon typus Smith, 1828",
 "HasCoordinate is true"
 ]
}

 The dataset includes 554 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009972-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6ux7k
title: Occurrence Download

description: A dataset containing 280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Saussurea medusa Maxim."
 ]
}

 The dataset includes 280 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066615-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3aytnn
title: Occurrence Download

description: A dataset containing 30976 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Mammalia",
 "HasCoordinate is true",
 "Year is greater than or equal to 1500",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 30976 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273517-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9webuu
title: Occurrence Download

description: A dataset containing 3447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ribes roezlii Regel",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Country is Mexico"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3447 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009972-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pnxur
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Satarupa nymphalis (Speyer, 1879)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 56 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066627-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucy6xc
title: Occurrence Download

description: A dataset containing 4354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ligustrum lucidum W.T.Aiton",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4354 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009972-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48436/brq68-jhm50
title: Data - Werginz et al. - Differential intrinsic firing properties in sustained and transient mouse αRGCs match their light response characteristics and persist during retinal degeneration

description: Patch clamp data associated with Werginz et al. - Differential intrinsic firing properties in sustained and transient mouse αRGCs match their light response characteristics and persist during retinal degeneration

Data, as well as simplified load and plot functions. The data is the basis for figures 1, 2, 3 and 5 in Werginz et al. (10.1523/JNEUROSCI.1592-24.2024). Functionality includes loading results from a specified retinal ganglion cell (RGC) and plotting spiking output (e.g., membrane voltage over time) in response to visual stimulation as well as long (500 ms) and short (3 ms) current injections into the soma. Provided code does not perform threshold searching or other, more complex, analysis.

Context and methodology



Data was created by patch clamp electrophysiology of mouse alpha retinal ganglion cells (RGCs)

Light as well as intracellular stimulation was applied to test intinsic properties of different types of RGCs.


Technical details



Data can directly be loaded and plotted in Matlab running plotData.m (tested in Matlab R2024b)

Parameters to be specified:



cellID - identifier of each recorded cell, see list on top of plotData.m. Don't forget to add the folder prefix specifiying cell type (ONS, OFFS or OFFT)



The Data folder is structured into different cell types (ONS, OFFS or OFFT) data

The helperFunctions folder includes additional methods to extract and plot data

If help is needed feel free to reach out to Paul Werginz


Data is licensed under Creative Commons Attribution 4.0 International (CC BY 4.0), the scripts are licensed under a MIT License.
description: Retinal ganglion cells (RGCs) are the neuronal connections between the eye and the brain conveying multiple features of the outside world through parallel pathways. While there is a large body of literature on how these pathways arise in the retinal network, the process of converting presynaptic inputs into RGC spiking output is little understood. In this study, we show substantial differences in the spike generator across three types of αRGCs in female and male mice, the αON sustained, αOFF sustained, and αOFF transient RGC. The differences in their intrinsic spiking responses match the differences in the light responses across RGC types. While sustained RGC types have spike generators that are able to generate sustained trains of action potentials at high rates, the transient RGC type fired shortest action potentials enabling it to fire high-frequency transient bursts. The observed differences were also present in late-stage photoreceptor-degenerated retina demonstrating long-term functional stability of RGC responses even when presynaptic circuitry is deteriorated for long periods of time. Our results demonstrate that intrinsic cell properties support the presynaptic retinal computation and are, once established, independent of them.
DOI: 10.48436/nb797-yez65
title: Data - Werginz et al. - Differential intrinsic firing properties in sustained and transient mouse αRGCs match their light response characteristics and persist during retinal degeneration

description: Patch clamp data associated with Werginz et al. - Differential intrinsic firing properties in sustained and transient mouse αRGCs match their light response characteristics and persist during retinal degeneration

Data, as well as simplified load and plot functions. The data is the basis for figures 1, 2, 3 and 5 in Werginz et al. (10.1523/JNEUROSCI.1592-24.2024). Functionality includes loading results from a specified retinal ganglion cell (RGC) and plotting spiking output (e.g., membrane voltage over time) in response to visual stimulation as well as long (500 ms) and short (3 ms) current injections into the soma. Provided code does not perform threshold searching or other, more complex, analysis.

Context and methodology



Data was created by patch clamp electrophysiology of mouse alpha retinal ganglion cells (RGCs)

Light as well as intracellular stimulation was applied to test intinsic properties of different types of RGCs.


Technical details



Data can directly be loaded and plotted in Matlab running plotData.m (tested in Matlab R2024b)

Parameters to be specified:



cellID - identifier of each recorded cell, see list on top of plotData.m. Don't forget to add the folder prefix specifiying cell type (ONS, OFFS or OFFT)



The Data folder is structured into different cell types (ONS, OFFS or OFFT) data

The helperFunctions folder includes additional methods to extract and plot data

If help is needed feel free to reach out to Paul Werginz


Data is licensed under Creative Commons Attribution 4.0 International (CC BY 4.0), the scripts are licensed under a MIT License.
description: Retinal ganglion cells (RGCs) are the neuronal connections between the eye and the brain conveying multiple features of the outside world through parallel pathways. While there is a large body of literature on how these pathways arise in the retinal network, the process of converting presynaptic inputs into RGC spiking output is little understood. In this study, we show substantial differences in the spike generator across three types of αRGCs in female and male mice, the αON sustained, αOFF sustained, and αOFF transient RGC. The differences in their intrinsic spiking responses match the differences in the light responses across RGC types. While sustained RGC types have spike generators that are able to generate sustained trains of action potentials at high rates, the transient RGC type fired shortest action potentials enabling it to fire high-frequency transient bursts. The observed differences were also present in late-stage photoreceptor-degenerated retina demonstrating long-term functional stability of RGC responses even when presynaptic circuitry is deteriorated for long periods of time. Our results demonstrate that intrinsic cell properties support the presynaptic retinal computation and are, once established, independent of them.
DOI: 10.13144/lil-0527
title: Recensement de la population 2007 : fichier détail logements

description: Le fichier détail logements du recensement de la population de 2007 porte sur la localisation, les caractéristiques d'un logement ordinaire (catégorie, type de construction, confort, surface, nombre de pièces, etc…), et les caractéristiques sociodémographiques du ménage qui y réside. Les informations relatives au ménage sont fournies uniquement lorsque le logement est occupé au titre de la résidence principale. Les variables y sont disponibles avec des modalités détaillées, y compris les variables à diffusion restreinte (nationalité, pays de naissance, ancienneté d'arrivée en France). A partir de ce fichier, il est donc possible de faire des analyses exploratoires de données, de modéliser des comportements, ou simplement de tabuler sur une sous-population particulière définie selon certains critères : appartenance à une zone géographique et/ou unité statistique présentant certaines caractéristiques.
DOI: 10.13144/lil-0530
title: Recensement de la population 2007 : fichier détail mobilités professionnelles

description: Le fichier détail "mobilités professionnelles" du recensement de la population de 2007 porte sur les déplacements quotidiens pour aller travailler (déplacements domicile-travail), les principales caractéristiques sociodémographiques, ainsi que celles du ménage auquel l'individu appartient. Les variables y sont disponibles avec des modalités détaillées, y compris les variables à diffusion restreinte (nationalité, pays de naissance, ancienneté d'arrivée en France). A partir de ce fichier, il est donc possible de faire des analyses exploratoires de données, de modéliser des comportements, ou simplement de tabuler sur une sous-population particulière définie selon certains critères : appartenance à une zone géographique et/ou unité statistique présentant certaines caractéristiques.
DOI: 10.13144/lil-0531
title: Recensement de la population 2007 : fichier détail mobilités scolaires

description: Le fichier détail "mobilités scolaires" du recensement de la population de 2007 porte sur les déplacements quotidiens des individus pour aller étudier (déplacements domicile-études), leurs principales caractéristiques sociodémographiques, ainsi que celles du ménage auquel ils appartiennent. Les variables y sont disponibles avec des modalités détaillées, y compris les variables à diffusion restreinte (nationalité, pays de naissance, ancienneté d'arrivée en France). A partir de ce fichier, il est donc possible de faire des analyses exploratoires de données, de modéliser des comportements, ou simplement de tabuler sur une sous-population particulière définie selon certains critères : appartenance à une zone géographique et/ou unité statistique présentant certaines caractéristiques.
DOI: 10.15468/dl.uzrawb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corybas fenestratus P.Royen"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146347-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rnnwqx
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Cypripedium parviflorum var. pubescens (Willd.) O.W.Knight",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 232 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006103-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pz8vdu
title: Occurrence Download

description: A dataset containing 7665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Specimen, Occurrence evidence)",
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Khaya senegalensis (Desv.) A.Juss."
 ]
}

 The dataset includes 7665 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026887-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fu3ge8
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sigmodon mascotensis J.A.Allen, 1897",
 "Country is Mexico",
 "Geometry POLYGON((-106.995849 23.130257,-106.995849 20.416716,-103.677978 20.416716,-103.677978 23.130257,-106.995849 23.130257))"
 ]
}

 The dataset includes 20 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004165-150410134957023/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gs1x5k
title: Occurrence Download

description: A dataset containing 9568 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Laurus nobilis L."
 ]
}

 The dataset includes 9568 records from 239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004167-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hrv9s
title: Occurrence Download

description: A dataset containing 677 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is one of (naturgucker, Biodiversity4all Research-Grade Observations, Inventario multitaxonómico del ANP Médanos de Samalayuca, Laura Steger and Rick Overson Vertebrate Observations, Anfibios y reptiles de las regiones 30 (Parque Natural Sierra Maderas del Carmen); 31 (Sierra El Burro-Río San Rodrigo); 36 (Sierra La Encantada); y 37 (Sierra El Pino), Coahuila)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Urosaurus ornatus (Baird & Girard, 1852)"
 ]
}

 The dataset includes 677 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146312-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mujkok
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elephas maximus Linnaeus, 1758",
 {
 "or" : [
 "Country is India",
 "Country is Nepal",
 "Country is China"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 33 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004165-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhd3r5
title: Occurrence Download

description: A dataset containing 741 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The reptiles and amphibians collection (RA) of the Muséum national d'Histoire Naturelle (MNHN - Paris)",
 "TaxonKey is Crotaphopeltis Fitzinger, 1843"
 ]
}

 The dataset includes 741 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146323-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.