cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15360444
title: Hypervigilance as an adaptive strategy to multiple risks in a songbird

description: GENERAL INFORMATION

1. Paper CitationHonza M, Capek M, Czyż B, Trnka A, Večeřová G, Samas P. XXX. Hypervigilance as an adaptive strategy to multiple risks in a songbird. Behav Ecol. XXX

2. Brief abstract

This dataset contains behavioral observations and acoustic playback experiment data from incubating female Great Reed Warblers in two populations with different brood parasitism pressures. The data includes vigilance responses (head turns, head alerts, nest leaving) to playback of Common Cuckoo, Eurasian Sparrowhawk, and European Turtle Dove calls, as well as responses to naturally occurring vocalizations. The dataset supports analyses comparing threat-specific versus generalized acoustic vigilance strategies in host-parasite systems.

3. Originators

Peter Samas

Miroslav Capek

4. Contact information

Peter Samas

Institute of Vertebrate Biology, Czech Academy of Sciences, Květná 8, 603 00 Brno, Czech Republic

psamas@seznam.cz

5. Date of data collection

May - June in 2022 and 2023

6. Geographic location(s) of data collection

Czech Republic - Fishpond systems near Hodonín (48°51’N 17°07’E) and Mutěnice (48°54’N 17°02’E)

Poland - Fishpond complexes near Ruda Milicka (51°32’N 17°19’E) and Ruda Sułowska (51°31’N 17°05’E)

7. Information about funding sources that supported the collection and curation of thedata

Czech Science Foundation grant (no. 22-26812S)

ACCESS INFORMATION

1. Licenses/restrictions placed on the data

Creative Commons Attribution 4.0 International

2. Data derived from other sources

NOT APPLICABLE

DATA FILES AND VARIABLES

Data on auditory vigilance in incubating female Great Reed Warblers exposed to brood parasite and predator vocalizations.

soundType: Type of acoustic stimulus (playback = experimental playback; natural = naturally occurring calls recorded during video observation)

country: Study population location (CZ = Czech Republic, high parasitism site; PL = Poland, low parasitism site)

nestID: Unique identifier for each Great Reed Warbler nest

soundSpecies: Species producing the sound stimulus (cuckoo = Common Cuckoo Cuculus canorus; raptor = Eurasian Sparrowhawk Accipiter nisus; dove = European Turtle Dove Streptopelia turtur; F.atra = Eurasian Coot Fulica atra; G.chloropus = Common Moorhen Gallinula chloropus; T.ruficollis = Little Grebe Tachybaptus ruficollis)

headTurn: Number of head turns ≥90° during sound presentation and 15 seconds after

headAlert: Number of abrupt head raises over nest rim during sound presentation and 15 seconds after

headTurnDuration: Total duration of head turns in seconds during sound presentation and 15 seconds after

headAlertDuration: Total duration of head alerts in seconds during sound presentation and 15 seconds after

leavingNest: Whether the female temporarily left the nest during sound presentation and 15 seconds after (yes/no)
DOI: 10.48544/7cdfaa7f-8e5d-4537-b72a-50e3463952f5
title: Leven in Zeeland 2021
DOI: 10.17026/ar/q0heiy
title: Inventariserend Veldonderzoek d.m.v. Proefsleuven Arendsplein te Oosterhout (gemeente Oosterhout)

description: In september 2024 heeft Antea Group in opdracht van Krisma Vastgoed B.V. een inventariserend veldonderzoek door middel van proefsleuven (variant archeologische begeleiding) uitgevoerd voor het Arendsplein in Oosterhout (gemeente Oosterhout). De aanleiding voor het archeologisch onderzoek is de herontwikkeling van het voormalige Rabobankterrein. Eerder is besloten het terrein van het voormalig bankgebouw niet te onderzoeken in verband met de onderkeldering van het pand. Met de uitgevoerde sloop werd ook bevestigd dat hier tot 3 meter minus maaiveld geen sprake meer kon zijn van een intacte bodemopbouw. Dit maakte dat in 2024 alleen het voormalige parkeerterrein kansrijk bleef op eventueel aanwezige archeologische resten.

Op het onbebouwde deel van het plangebied zijn tijdens onderhavig onderzoek twee proefsleuven van 12,5 bij 4 m aangelegd. Proefsleuf 1 valt daarbij binnen het plangebied van Krisma; proefsleuf 2 komt in toekomstig openbaar gebied en is daarmee onderdeel van een latere ontwikkeling in opdracht van de gemeente Oosterhout. De proefsleuven zijn in 2024 zo aangelegd dat ze buiten de verontreinigde zones vielen, waardoor niet onder saneringscondities hoefde te worden gewerkt.

Er is daarna één vlak aangelegd in de huidige top van de C-horizont. Hierbij was ook speciaal aandacht voor eventuele funderingsresten en muurwerk.

Resultaten
Het onderzoek heeft één vindplaats opgeleverd, namelijk een of meerdere kuilen met daarin pottenbakkers-afval uit de 17e eeuw. Uit overige periodes zijn geen resten aangetroffen. Ook zijn er geen sporen aangetroffen van de voormalige gasfabriek. De beperkte hoeveelheid archeologische resten (sporen en vondsten) kan worden verklaard door de aanzienlijke recente verstoringen binnen het gebied, veroorzaakt door kabels en leidingen, oude funderingen en overige grondwerkzaamheden uit de recente geschiedenis.

De aangetroffen vindplaats is beoordeeld als niet behoudenswaardig. Antea Group adviseert daarom om het plangebied vrij te geven ten behoeve van de voorgenomen werkzaamheden.

Dit is een advies. Het nemen van een selectiebesluit is voorbehouden aan de bevoegde overheid, in dit geval de gemeente Oosterhout. Deze is op 15 september 2025 akkoord gegaan met dit rapport en het advies.
DOI: 10.15468/dl.8vk7mm
title: Occurrence Download

description: A dataset containing 270294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anacamptis pyramidalis",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "HasCoordinate is true"
 ]
}

 The dataset includes 270294 records from 1534 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024613-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17035/cardiff.30196870
title: The synthesis of <sup>18</sup>F-SynVesT-1 and <sup>18</sup>F-SynVesT-2 from enantioenriched boronic esters

description: This data set contains 1H, 13C and 19FNMR files of novel compounds in the synthesis of boronic ester precursors of SynVesT-1 and SynVesT-2 that can be used to generate the corresponding 18F-radiolabelled compounds.
DOI: 10.17035/cardiff.30196870.v1
title: The synthesis of <sup>18</sup>F-SynVesT-1 and <sup>18</sup>F-SynVesT-2 from enantioenriched boronic esters

description: This data set contains 1H, 13C and 19FNMR files of novel compounds in the synthesis of boronic ester precursors of SynVesT-1 and SynVesT-2 that can be used to generate the corresponding 18F-radiolabelled compounds.
DOI: 10.13018/bmr25437
title: Endo T5-ZN+2
DOI: 10.13018/bmr25439
title: Solution structure and 1H, 13C, and 15N chemical shift assignments for Bud31p
DOI: 10.13018/bmr25440
title: 1H and 113Cd chemical shift assignments for the cysteins and metals of Bud31p Cd3
DOI: 10.13018/bmr25441
title: Backbone chemical shift assignments for human Rotavirus P[19] VP8* domain of VP4
DOI: 10.13018/bmr25442
title: Snu17p-Bud13p structure intermediate during RES complex assembly
DOI: 10.13018/bmr25443
title: Snu17p-Pml1p structure intermediate during RES complex assembly
DOI: 10.13018/bmr25445
title: HN,N,CA,CB assignments of A2A-ct
DOI: 10.13018/bmr25446
title: solution Structure of KstB-PCP in kosinostatin biosynthesis
DOI: 10.13018/bmr25447
title: solution Structure of KstB-PCP in kosinostatin biosynthesis
DOI: 10.13018/bmr25448
title: Solution structure of N-terminal domain of human TIG3
DOI: 10.13018/bmr25449
title: Solution structure of RNA recognition motif of a cyclophilin33 - like protein from Plasmodium falciparum
DOI: 10.13018/bmr25451
title: Solution structure of the dithiolic glutaredoxin 2-C-Grx1 from the pathogen Trypanosoma brucei brucei
DOI: 10.13018/bmr25452
title: Omega-Tbo-IT1 selective inhibitor of insect calcium channels isolated from Tibellus oblongus spider venom
DOI: 10.13018/bmr25453
title: 1H, 13C and 15N assignment of the C-terminal domain of human galectin 8
DOI: 10.13018/bmr25454
title: Solution structure of a bacterial chaperone
DOI: 10.13018/bmr25455
title: Backbone, side chain and heme resonance assignments of cytochrome OmcF from Geobacter sulfurreducens
DOI: 10.13018/bmr25456
title: Cullin3 - BTB interface: a novel target for stapled peptides
DOI: 10.13018/bmr25457
title: Cullin3 - BTB interface: a novel target for stapled peptides
DOI: 10.13018/bmr25458
title: NMR structure of an Odin-Sam1 fragment
DOI: 10.13018/bmr25459
title: Solution structure of Fungus protein Q8J180_MAGGR
DOI: 10.13018/bmr25460
title: Solution structure of Fungus protein B9WZW9_MAGOR
DOI: 10.15468/dl.k9h86c
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Chromis xanthochira"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003295-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr25461
title: Structure of the CUE domain of yeast Cue1
DOI: 10.15468/dl.zgzsvf
title: Occurrence Download

description: A dataset containing 675525 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is DATASAPROX : standardised database of saproxylic beetles from flight interception traps in continental France and Corsica"
 ]
}

 The dataset includes 675525 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003257-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr25462
title: Backbone Chemical Shift Assignments for the Monomeric [R238A] Mutant of Non-Structural Protein 1 Effector Domain from Influenza B Virus
DOI: 10.13018/bmr25463
title: Backbone Chemical Shift Assignments for the Wild-Type Dimeric Non-Structural Protein 1 Effector Domain from Influenza B Virus
DOI: 10.13018/bmr25464
title: Solution structure of an MbtH-like protein from Mycobacterium marinum. Seattle Structural Genomics Center for Infectious Disease target MymaA.01649.c
DOI: 10.13018/bmr25465
title: ConRlBNQO
DOI: 10.13018/bmr25466
title: BCL-XL
DOI: 10.13018/bmr25467
title: Backbone H, N and C assignments for PLAT domain of human polycystin-1, W3128A mutant
DOI: 10.5281/zenodo.18404353
title: Effects of anthropogenic stress on stingless bees Melipona mandacaia inhabiting urban and natural environments Dataset

description: The data presented herein relates to the manuscript " Effects of anthropogenic stress on stingless bees Melipona mandacaia inhabiting urban and natural environments Dataset" by Souza et al., submitted to Data In Brief. The dataset is related to the study of Souza et al. submitted to Environmental Toxicology and Pharmacology.
DOI: 10.5281/zenodo.14605064
title: Effects of anthropogenic stress on stingless bees Melipona mandacaia inhabiting urban and natural environments Dataset

description: The data presented herein relates to the manuscript " Effects of anthropogenic stress on stingless bees Melipona mandacaia inhabiting urban and natural environments Dataset" by Souza et al., submitted to Data In Brief. The dataset is related to the study of Souza et al. submitted to Environmental Toxicology and Pharmacology.
DOI: 10.13018/bmr25468
title: Solution NMR Structure of PDFL2.1 from Arabidopsis thaliana
DOI: 10.15468/dl.9qvqj4
title: Occurrence Download

description: A dataset containing 4565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sesbania punicea"
 ]
}

 The dataset includes 4565 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003293-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7fqx6
title: Occurrence Download

description: A dataset containing 1763 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Limnophila sessiliflora"
 ]
}

 The dataset includes 1763 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003292-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr25469
title: Solution structure of hnRNP C RRM in complex with 5'-UUUUC-3' RNA
DOI: 10.13018/bmr25470
title: Phosphorylation of CB1Cannabinoid Receptor Fourth Intracellular Loop Peptides: Effects on Structure and Function
DOI: 10.13018/bmr25471
title: Phosphorylation of CB1Cannabinoid Receptor Fourth Intracellular Loop Pepducins: Effects on Structure and Function
DOI: 10.13018/bmr25472
title: Solution Structure of mu-SLPTX-Ssm6a
DOI: 10.13018/bmr25473
title: Pcf11 second N-terminal domain
DOI: 10.13018/bmr25474
title: NMR structure of Protegrin-3 (PG3) in the presence of DPC micelles
DOI: 10.13018/bmr25475
title: Structure of Tau(267-312) bound to Microtubules
DOI: 10.13018/bmr25476
title: Solution NMR structure of Salmonella typhimurium transcriptional regulator protein Crl
DOI: 10.13018/bmr25477
title: Solution structure of oxidized triheme cytochrome PpcA from Geobacter sulfurreducens
DOI: 10.15468/dl.qhy75b
title: Occurrence Download

description: A dataset containing 616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Macao, Hong Kong)",
 "TaxonKey is Alsophila"
 ]
}

 The dataset includes 616 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003290-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr25478
title: Phosphorylation of CB1Cannabinoid Receptor Fourth Intracellular Loop pepducins: Effects on Structure and Function
DOI: 10.13018/bmr25479
title: Role of a non-canonical surface of Rad6 in ubiquitin conjugating activity
DOI: 10.13018/bmr25481
title: Backbone 1H, 13C and 15N chemical shift assignment for perforin C2 quad mutant
DOI: 10.13018/bmr25482
title: Solution structural studies of GTP:adenosylcobinamide-phosphate guanylyltransferase (CobY) from Methanocaldococcus jannaschii
DOI: 10.13018/bmr25483
title: Metal Binding of Glutaredoxins
DOI: 10.13018/bmr25484
title: Characterization of the p300 Taz2-p53 TAD2 Complex and Comparison with the p300 Taz2-p53 TAD1 Complex
DOI: 10.13018/bmr25485
title: NMR Solution Structure of the PRO Form of Human Matrilysin (proMMP-7)
DOI: 10.13018/bmr25486
title: Purotoxin-2 NMR structure in water
DOI: 10.15468/dl.u7bade
title: Occurrence Download

description: A dataset containing 5487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chinese Taipei",
 "TaxonKey is Alsophila"
 ]
}

 The dataset includes 5487 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003291-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr25487
title: Purotoxin-2 NMR structure in DPC micelles
DOI: 10.13018/bmr25488
title: NMR Solution Structure of the PRO Form of Human Matrilysin (proMMP-7) in Complex with Zwitterionic Membrane
DOI: 10.13018/bmr25489
title: NMR Solution Structure of the PRO Form of Human Matrilysin (proMMP-7) in Complex with Anionic Membrane
DOI: 10.5281/zenodo.18785822
title: Figures of paper "Freestanding magnetic membranes on graphene for spin-filtering applications" by L.Nessi et al.

description: Figures of paper "Freestanding magnetic membranes on graphene for spin-filtering applications" by L.Nessi et al., published on Phys. Rev. Applied (2026), containing experimental data.
DOI: 10.5281/zenodo.18785821
title: Figures of paper "Freestanding magnetic membranes on graphene for spin-filtering applications" by L.Nessi et al.

description: Figures of paper "Freestanding magnetic membranes on graphene for spin-filtering applications" by L.Nessi et al., published on Phys. Rev. Applied (2026), containing experimental data.
DOI: 10.13018/bmr25490
title: Structure of Conantokin Rl-B
DOI: 10.5281/zenodo.18784391
title: Supplementary Materials: Lifecycle-Oriented Hybrid RL-Physics-Based Modelling for Predictive Monitoring in Fluid Machinery Systems

description: This dataset represents the first systematic evidence synthesis examining the integration of physics-based models with reinforcement learning for predictive monitoring in fluid machinery systems. Through rigorous screening of 127 peer-reviewed papers published between 2020 and 2025, we have constructed a comprehensive evidence matrix that maps the landscape of hybrid RL-physics approaches across their complete lifecycle—from initial design constraints through training optimization to deployment validation. Our analysis reveals a concerning methodological gap: while the field has developed sophisticated training-phase integration mechanisms, including multi-fidelity surrogates, physics-informed neural networks, and differentiable physics operators, deployment-ready systems with calibrated uncertainty quantification remain remarkably sparse (only 6 of 127 papers report deployment-level validation).

The dataset includes six meticulously curated supplementary tables documenting paper classifications, lifecycle categorizations, methodological coupling patterns, domain distributions, and evidence quality assessments, alongside validated analysis scripts that implement our novel integration scoring rubric. Our sensitivity analysis demonstrates robustness through ±20% weight perturbations, with 84% of top-tier papers maintaining their classifications. Each paper's assignment to tiers A (physics-monitoring coupling with deployment considerations), B (partial integration), or C (limited integration) is fully justified with explicit criteria and detailed justifications. Beyond mere cataloging, this collection provides actionable insights for practitioners through standardized reporting frameworks, identifies critical research bottlenecks in sim-to-real transfer protocols, and establishes baseline metrics for future meta-analyses. The reproducible screening protocols, inter-rater coding sheets, and complete decision audit trails ensure full transparency and enable community reuse, making this dataset an essential foundation for advancing deployable physics-informed monitoring systems from laboratory concepts to industrial reality.
DOI: 10.5281/zenodo.18784392
title: Supplementary Materials: Lifecycle-Oriented Hybrid RL-Physics-Based Modelling for Predictive Monitoring in Fluid Machinery Systems

description: This dataset represents the first systematic evidence synthesis examining the integration of physics-based models with reinforcement learning for predictive monitoring in fluid machinery systems. Through rigorous screening of 127 peer-reviewed papers published between 2020 and 2025, we have constructed a comprehensive evidence matrix that maps the landscape of hybrid RL-physics approaches across their complete lifecycle—from initial design constraints through training optimization to deployment validation. Our analysis reveals a concerning methodological gap: while the field has developed sophisticated training-phase integration mechanisms, including multi-fidelity surrogates, physics-informed neural networks, and differentiable physics operators, deployment-ready systems with calibrated uncertainty quantification remain remarkably sparse (only 6 of 127 papers report deployment-level validation).

The dataset includes six meticulously curated supplementary tables documenting paper classifications, lifecycle categorizations, methodological coupling patterns, domain distributions, and evidence quality assessments, alongside validated analysis scripts that implement our novel integration scoring rubric. Our sensitivity analysis demonstrates robustness through ±20% weight perturbations, with 84% of top-tier papers maintaining their classifications. Each paper's assignment to tiers A (physics-monitoring coupling with deployment considerations), B (partial integration), or C (limited integration) is fully justified with explicit criteria and detailed justifications. Beyond mere cataloging, this collection provides actionable insights for practitioners through standardized reporting frameworks, identifies critical research bottlenecks in sim-to-real transfer protocols, and establishes baseline metrics for future meta-analyses. The reproducible screening protocols, inter-rater coding sheets, and complete decision audit trails ensure full transparency and enable community reuse, making this dataset an essential foundation for advancing deployable physics-informed monitoring systems from laboratory concepts to industrial reality.
DOI: 10.13018/bmr25491
title: Structure of Conantokin Rl-B
DOI: 10.13018/bmr25492
title: NMR structure of the HLTF HIRAN domain in its DNA-bound conformation.
DOI: 10.13018/bmr25493
title: Human Med26 N-Terminal Domain (1-92)
DOI: 10.13018/bmr25494
title: First and second KH domains of hnRNP E1
DOI: 10.13018/bmr25495
title: Structure and dynamics of the acidosis-resistant a162H mutant of the switch region of troponin I bound to the regulatory domain of troponin C
DOI: 10.15468/dl.mgd25t
title: Occurrence Download

description: A dataset containing 545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Tannodia"
 ]
}

 The dataset includes 545 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003294-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rt3r39
title: Occurrence Download

description: A dataset containing 1354513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is one of (France, Sweden, Germany, Australia, Switzerland, Netherlands, Belgium, Denmark, Slovakia, United Kingdom of Great Britain and Northern Ireland)",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "LifeStage is Flowering",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 1354513 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003245-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr25496
title: NMR structure of the RRM3 domain of Gbp2
DOI: 10.13018/bmr25497
title: NMR structure of the RRM1 domain of Hrb1
DOI: 10.13018/bmr25498
title: NMR structure of the RRM2 domain of Hrb1
DOI: 10.13018/bmr25499
title: NMR structure of the RRM3 domain of Hrb1
DOI: 10.13018/bmr25500
title: Backbone chemical shift assignments for the folded/unfolded drkN SH3 protein in the presence of DnaK chaperone at pH 7.2
DOI: 10.13018/bmr25501
title: Backbone chemical shift assignments for the folded/unfolded drkN SH3 protein at pH 7.2
DOI: 10.6084/m9.figshare.29327264
title: 树冠结构复杂性

description: 实验中使用的 LiDAR 点云包括单棵树的点云和树冠的点云。