cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.64048p0.2/2.2
title: Martin et al. 2018 Supplementary Data from Heaviside's dolphins (Cephalorhynchus heavisidii) relax acoustic crypsis to increase communication range

description: This .wav file includes an example of each pulsed signal type described for Heaviside's dolphins in Martin et al. 2018. The signal types are in the order: 1) broadband click train, 2) burst-pulse, 3) buzz and 4) NBHF click train.
DOI: 10.5061/dryad.64048p0.2/4.2
title: Martin et al. 2018 Supplementary Methods from Heaviside's dolphins (Cephalorhynchus heavisidii) relax acoustic crypsis to increase communication range

description: Supplementary Methods contain details about the statistical analyses used to classify the pulsed signal types of Heaviside's dolphins. Also, methods include the steps and figures used to model the active space of a NBHF click compared to a click extracted from a lower-frequency burst-pulse signal.
DOI: 10.5061/dryad.64048p0.2/5.2
title: Martin et al. 2018 Appendix S1 from Heaviside’s dolphins (Cephalorhynchus heavisidii) relax acoustic crypsis to increase communication range

description: Appendix S1 contains acoustic parameter measurements from pulsed signals measured from Heaviside's dolphins
DOI: 10.5061/dryad.6tm4m2s/1
title: Trait data for 12 Brachypodium hybridum populations

description: This file includes the biomass (and its CV) data measured from the common garden experiment for the 12 invasive Californian Brachypodium hybridum populations.
DOI: 10.5061/dryad.7tp3sg0/1
title: SNP genotypic data for the contemporary sample of Pinzón Galapagos giant tortoises (Chelonoidis duncanensis)

description: vcf file containing SNP genotypic data at 7,730 loci for the contemporary population sample (n = 149) of the Galapagos giant tortoises endemic to Pinzón Island (Chelonoidis duncanensis)
DOI: 10.5061/dryad.8kv341d/1
title: Preference for larger females in guppies

description: Data obtained in dichotomous choice tests evaluating male preference for larger females in guppies selected for large and small relative brain size, as well as in non-selected individuals. Description of variables provided in README file
DOI: 10.5061/dryad.92bh000/1
title: Experimental data of HES

description: Original experimental data of HES
DOI: 10.5061/dryad.953cv28/1
title: Data_Predictability_For Dryad

description: This data file contains both R (Max growth rate) and K (Max OD attained) for all populations. Assay = Assay environment; Sel = Selection Environment; Rep = Replicate#; Day= Trial#, Maxsl'=Maximum Slope; Kmax = Max OD attained. Ancestor = Ancestral strain.
DOI: 10.5061/dryad.b23dd4r/1
title: Diary viscosity using LSCI, matlab data

description: Matlab data with frame-to-frame and g2 intensity correlations calculated for dairy products.
DOI: 10.5061/dryad.b58n0g2/1
title: Alcalay et al_Predation risk enhances dispersal in mosquitoes
DOI: 10.5061/dryad.b7bq47d/1
title: Zhang et al Heredity data archive

description: This file contains the names, descriptions, and phenotype data of each used lines or ecotypes.
DOI: 10.5061/dryad.c68b045/1
title: Genotype data for all individuals included in the study

description: STRUCTURE format Genotype data for all wild sampled and hatchery individuals included in the study.
DOI: 10.5061/dryad.c68b045/2
title: Sampling Coordinates

description: Sampling coordinates for all wild individuals included in the study
DOI: 10.5061/dryad.f06d9k2/1
title: Collision and Annihilation of Nonlinear Sound Waves and Action Potentials in Interfaces_Data Figure 4

description: Nonlinear Response function as an amplitude vs excitation strength plot. Data used to obtain Figure for of the manuscript represents response measured as ratiometric FRET vs blade displacement in millimeters.
DOI: 10.5061/dryad.hj670t4/1
title: Becker et al PLoS NTD_data

description: Individual-level data on Bartonella infection status as determined by PCR targeting gltA and relevant vampire bat covariates.
DOI: 10.5061/dryad.j6823nt/1
title: BEAST XML file used to infer phylogeny
DOI: 10.5061/dryad.j6823nt/2
title: Table S1

description: Details on the individuals for which we generated ddRAD data, including their museum voucher id, latitude, longitude, nominal species, and raw number of sequencing pairs generated.
DOI: 10.5061/dryad.j6823nt/3
title: Phylogeny of revised taxonomy
DOI: 10.5061/dryad.j6823nt/4
title: Phylogeny of existing taxonomy
DOI: 10.5061/dryad.jf2k153/1
title: AFLP data

description: Amplified Fragmenth Length Polymophisms (AFLP) data used for clonal assignment in the format of the program GENODIVE.
DOI: 10.5061/dryad.jf2k153/2
title: SSR data

description: Single Sequence Repeats (SSRs) data used for clonal assignment in the format of the program GENODIVE.
DOI: 10.5061/dryad.pp5bs35/1
title: Benbow et al Supplemental Data Ecological Monographs 2018

description: The data provided in this file represent the data that were included in Figure 3 of Benbow et al. 2018. Necrobiome Framework for Bridging Decomposition Ecology of Autotrophically- and Heterotrophically-Derived Organic Matter. Ecological Monographs.
DOI: 10.5061/dryad.r1j3051/1
title: A multi-target BCI based on c-VEP

description: The EEG data set was recorded during a c-VEP BCI experiment. The experimental system consists of a personal computer (Lenovo China) and an EEG amplifier (a Synamps2 system, Neuroscan Inc.) with 64 EEG channels. The computer has a 24-in. liquid crystal display (LCD) monitor and a parallel port linked to the amplifier. The LCD monitor has a refresh rate of 60 Hz and a resolution of1920 1080 pixels. Stimulus presentation was operated in the computer and controlled by the stimulus program developed under Visual C++ 9.0 platform. DirectX (Microsoft Inc.) was employed to ensure the stability of frame-based rendering of stimuli. Event trigger signals yielded by the stimulus programwere sent from the parallel port of the computer to the EEG amplifier and recorded on an event channel for synchronizingstimulus presentation and EEG data recordings.
DOI: 10.5061/dryad.rm2jn70/1
title: DemStoch

description: Zip file containing main.cpp (main script for simulating diffusion approximations from equations 1a and 1b), an example parameter input file param.txt and the README file.
DOI: 10.5061/dryad.s526b27/1
title: Data for analysis at the family and tribe level separately.
DOI: 10.5061/dryad.v95q1/1
title: Populus euphratica SSR data
DOI: 10.5061/dryad.v95q1/2
title: Populus pruinosa SSR data
DOI: 10.5061/dryad.v95q1/3
title: Populus euphratica multilocus genotypes
DOI: 10.5061/dryad.v95q1/4
title: Populus pruinosa multilocus genotypes
DOI: 10.5061/dryad.v95q1/5
title: Population information
DOI: 10.17632/67kghfky38.1
title: Data for: Pre- and post-treatment of cellulose fiber for functionalized nanofibrillar cellulose preparation: A review

description: Cv of corresponding author
DOI: 10.5061/dryad.104g3d0/1
title: ms_controller_v1.7

description: R wrapper script to run msABC and generate simulations. Use '--help' to see available options. Requires GNU Parallel to run properly.
DOI: 10.5061/dryad.104g3d0/2
title: abc_processor_v1.5

description: Rscript using abc package to postprocess output from msABC simulations. See '--help' for more information.
DOI: 10.5061/dryad.104g3d0/3
title: model_selector_v1.1

description: Rscript wrapper for performing model selection using abc R package. Use '--help' for additional information.
DOI: 10.5061/dryad.104g3d0/4
title: calc_gsi

description: R script for calculating gsi (genealogical sorting index) on phylogenetic trees
DOI: 10.5061/dryad.104g3d0/5
title: tree_classifcation_clean

description: R script for classifying phylogenetic trees based on geography/species.
DOI: 10.5061/dryad.104g3d0/6
title: autosomal_phylogenetic_trees

description: Autosomal phylogenetic trees for Japan Sea, Pacific Ocean and Atlantic Ocean individuals. Estimated for 10, 50 and 100 KB windows.
DOI: 10.5061/dryad.104g3d0/7
title: female_only_phylogenetic_trees_whole_genome

description: Phylogenetic trees for females only for the entire stickleback genome. Includes estimates for 10, 50 and 100 Kb windows
DOI: 10.5061/dryad.118ph65/2
title: Eucalypt species traits Grampians

description: This file contains species-level traits
DOI: 10.5061/dryad.17vf831/1
title: Effect of coloration on size perception

description: Data on response of 96 human subjects each presented with four cards with two grasshopper images of identical size and asked to indicate which if any of the images that was largest. Grasshoppers were either black, grey or striped. One of the cards showed one monomorphic pair (same colour) and three cards showed all three dimorphic combinations with different-coloured grasshoppers. The file includes information on participant (number only), and for each of the four cards the colour morph combination and the response.
DOI: 10.5061/dryad.17vf831/2
title: Detection of small, medium and large grasshoppers in size-variable sequences

description: Data on performance of 51 human subjects that were asked to search for images of either black, grey or striped Tetrix subulata grasshoppers presented in size-variable sequences (5 small, 5 medium and 5 large presented in random order) on computer screens against photographs of natural grasshopper habitat. There were 17 subjects for each grasshopper colour. Grasshoppers were of the same colour within sequences but varied among sequences. The file includes information on background image identity, grasshopper colour morph, grasshopper image number, response time (time until response, either detection of grasshopper or incorrect response) and response (detection of grasshopper or incorrect response). Data for each subject/sequence is included on a separate sheet.
DOI: 10.5061/dryad.17vf831/3
title: Detection of medium sized grasshoppers in size-invariable sequences

description: Data on performance of 18 human subjects that searched for images of medium sized Tetrix subulata grasshoppers presented in sequences (10 images in each sequence) on computer screens against photographs of natural grasshopper habitat. The subjects were presented with three size-invariable sequences each (one for each of the black, grey and striped grasshopper colour morphs). The file includes information on background image identity, grasshopper colour morph, grasshopper image number, response time (time until response, either detection of grasshopper or incorrect response) and response (detection of grasshopper or incorrect response). Data for each sequence is included on a separate sheet.
DOI: 10.5061/dryad.1b8m917/1
title: Model.v2

description: This is the R code for implementing the model described in the paper using backward iteration.  The parameters listed in the top section of the code can be modified to replicate the various results reported in the paper.
DOI: 10.5061/dryad.2g7g3dc/1
title: Boechera-Maladaptation

description: Mathematica notebook for Boechera sp.
DOI: 10.5061/dryad.2g7g3dc/2
title: Fagus-Maladaptation

description: Mathematica notebook for Fagus sp.
DOI: 10.5061/dryad.2qg02qq/1
title: Linux binary for metapopulation simulation program

description: This is a compiled binary of the metapopulation simulation program for CentOS Linux 7.4. This program requires the GSL to run. Executing the program with no options provides the following help/usage menu:

./metapop version 1 -- Dec. 2016

Usage: metapop [options]
-g Number of generations
-k Carrying capacity or constant population size
-p Patch organization: 0 = coarse grain, 1 = fine grain, 2 = random
-l Number of causal loci
-m Migration rate between neighboring demes
-s Per allele selection coefficient
-r Genetic arch.: 1 = SNPs liked, 0 = free recombination
-v Standing genetic variation: 1 = true, 0 = false
-u Mutation rate per locus
-w Fitness function: 0 = additive, 1 = multiplicitive
-f Outfile prefix
DOI: 10.5061/dryad.2qg02qq/2
title: Source code for the metapopulation simulation program

description: The compressed directory contains the source code for the metapopulation simulation program. This code was written in C++ and requires the GSL. To compile on a Linux system try: g++ -O3 -Wall -o metapop main.C func.C -lm -lgsl -lgslcblas
DOI: 10.5061/dryad.37g7v3v/1
title: Supporting file 1_Agam_transcript_LT200bp

description: Agave americana transcript sequences of less than 200bp
DOI: 10.5061/dryad.37g7v3v/2
title: Supporting file 2_Agam_representative_protein_sequence

description: Representative protein sequences of Agave americana
DOI: 10.5061/dryad.37g7v3v/3
title: Supporting file 3_Agde_representative_protein_sequence

description: Representative protein sequences of Agave deserti
DOI: 10.5061/dryad.37g7v3v/4
title: Supporting file 4_Agte_representative_protein_sequence

description: Representative protein sequences of Agave tequilana
DOI: 10.5061/dryad.37g7v3v/5
title: Supporting file 5_ExpressionData

description: Time-course expression data of Agave americana for 15 samples collected with three biological replicates, including eight samples of the mature fourth fully expanded leaf collected at 3, 6, 9, 12, 15, 18, 21 and 24 hours after the beginning of the light period; three young leaf samples collected at diel time points of 6, 12 and 21 hours, respectively; and four non-leaf samples (i.e., meristem, rhizome, root or stem) collected at 3 hr after the beginning of the light period.
DOI: 10.5061/dryad.3k0m625/1
title: Pocket Gopher Mound Surveys Clark et al PLOS ONE

description: Pocket Gopher Mound Surveys for Clark et al PLOS ONE
DOI: 10.5061/dryad.3k0m625/2
title: Mass Nitrogen and Phosphorus in Litterfall Clark et al PLOS ONE

description: Mass, Nitrogen and Phosphorus in Litterfall for Clark et al PLOS ONE
DOI: 10.5061/dryad.3k0m625/3
title: Mass Nitrogen and Phosphorus in Litterbags Clark et al PLOS ONE

description: Percent Mass, Nitrogen and Phosphorus Remaining in Litterbags Clark et al PLOS ONE
DOI: 10.5061/dryad.40sh435/1
title: Data, phylogenetic trees and R scripts used to generate results

description: This data package accompanies the manuscript "Substrate specificity influences the evolutionary trajectory of the constituent fungus in a widespread group of crustose lichens"
by Philipp Resl, Fernando Fernández-Mendoza, Helmut Mayrhofer and Toby Spribille. It includes data, phylogenetic trees and R scripts used to generate results.
DOI: 10.5061/dryad.4kn5j5d.2
title: Data from: Signatures of microevolutionary processes in phylogenetic patterns
DOI: 10.5061/dryad.4kn5j5d.2/1.2
title: Individual-based model

description: The code for run simulations based on the model presented in the paper.
DOI: 10.5061/dryad.4kn5j5d.2/2.2
title: input

description: An example of input data to run the ibm.f90 code.
DOI: 10.5061/dryad.5542pr8/1
title: Odontomachus_Multilocus

description: This is the multi-locus (six genes) alignment with 112 Odontomachus specimens. This dataset has been used to infer the phylogenetic relationships within the genus Odontomachus.
DOI: 10.5061/dryad.584g6qg/1
title: Input Fitness data

description: Fitness data used for the reproductive success analysis. Columns: BroodID (ID of the brood = the same ID is attributed to the father and mother of the brood); SiteID (ID of the site); Year (1998 to 2016); Laying date (julian date); Clutch size (clutch size before crossfostering if there is crossfostering); Clutch sizeII (can be different from clutchsize if there is crossfostering and if the number of crossfostered eggs between clutches is different; this variable was used for the fledging success); Cross (crossfostering, yes or no); Fledglings (number of fledglings); Deadnestlings (number of dead nestlings); Ring (ring of the mother or father); sex (1 = male/father; 2 = female/mother); MC1R (II = homozygote for the rufous allele; VI = heterozygote; VV = homozygote for the white allele); MC1R.2 (II and VI genotypes are grouped and II genotypes are renamed VI); Status (Imm = immigrant/born outstide the study area; Res = resident/born inside the study area).
DOI: 10.5061/dryad.584g6qg/2
title: Input Genetic data

description: Genetic data used for the genetic analyses. Columns:  year (1998 to 2012); bird ring (ID); sex (1 = male; 2 = female), immigrant status (1 = immigrant/born oustide the study area; 0 = resident/born inside the study area); V126I (MC1R, II = ho for the rufous allele; VI = he; VV = ho for the white allele); 10 microsatellites (diploid).
DOI: 10.5061/dryad.6060q21/4
title: Xiong and Flexas dataset 2018_final
DOI: 10.5061/dryad.64048p0.1
title: Data from: Heaviside's dolphins (Cephalorhynchus heavisidii) relax acoustic crypsis to increase communication range
DOI: 10.5061/dryad.64048p0.1/2.1
title: Martin et al. 2018 Supplementary Data from Heaviside's dolphins (Cephalorhynchus heavisidii) relax acoustic crypsis to increase communication range

description: This .wav file includes an example of each pulsed signal type described for Heaviside's dolphins in Martin et al. 2018. The signal types are in the order: 1) broadband click train, 2) burst-pulse, 3) buzz and 4) NBHF click train.
DOI: 10.5061/dryad.64048p0.1/4.1
title: Martin et al. 2018 Supplementary Methods from Heaviside's dolphins (Cephalorhynchus heavisidii) relax acoustic crypsis to increase communication range

description: Supplementary Methods contain details about the statistical analyses used to classify the pulsed signal types of Heaviside's dolphins. Also, methods include the steps and figures used to model the active space of a NBHF click compared to a click extracted from a lower-frequency burst-pulse signal.
DOI: 10.5061/dryad.64048p0.1/5.1
title: Martin et al. 2018 Appendix S1 from Heaviside’s dolphins (Cephalorhynchus heavisidii) relax acoustic crypsis to increase communication range

description: Appendix S1 contains acoustic parameter measurements from pulsed signals measured from Heaviside's dolphins
DOI: 10.5061/dryad.732c1c5/1
title: Data S1-JSE-2018-03-026

description: Data S1. Herbarium specimens used in the analyses relative to the cytogenetics, lodicule morphology and foliar anatomy. The four species investigated [i.e., Elymus caninus (L.) L., E. hispanicus (Boiss.) Talavera, E. marginatus (H.Lindb.) Á.Löve and E. repens (L.) Gould] were used in the analyses relative to both lodicule morphology and foliar anatomy. Those of E. hispanicus and E. marginatus were also analysed cytogenetically. For each specimen it is indicated: country (abbreviations: AND, Andorra; FRA, France; ESP, Spain; MAR, Morocco), region/autonomous community, island, province, location, coordinates, altitude, ecology, date, collectors, collector number and reference of the herbarium SALA.
DOI: 10.5061/dryad.7tp3sg0/2
title: SNP genotypic data for the contemporary and historical samples of Pinzón Galapagos giant tortoises (Chelonoidis duncanensis)

description: vcf file containing SNP genotypic data at 2,218 loci for the historical (n = 25) and contemporary (n = 149) population samples of the Galapagos giant tortoises endemic to Pinzón Island (Chelonoidis duncanensis)
DOI: 10.5061/dryad.8vt6s95/1
title: Biogeographic regions for Sigmodontinae.

description: A shapefile containing the bioregions for sigmodontines across the Neotropical region.
DOI: 10.5061/dryad.8vt6s95/2
title: Geographic range maps for South American Cricetidae

description: Digitized range maps of species of cricetid rodents in South America; taxonomy and distributions follow accounts in Patton, Pardiñas & D'Elia (eds.). 2015. Mammals of South America, Vol 2: Rodents, University of Chicago Press.
DOI: 10.5061/dryad.9095kg7/1
title: COHU_hummingbird_data

description: CO_hummingbird_data is an excel sheet with two tabs of data. The first tab - individual_data - contains information about each Costa's hummingbird male's morphology, display characteristics, plumage patch size, feather reflectance, display environment information, and chronological information. The second tab - display-color_data - contains information about each male's individual displays; specifically the angular distances he moved, the angles at which he oriented himself relative to the female, and the photometric variables (luminance, UV cone stimulation, SW cone stimulation, MW cone stimulation, and LW cone stimulation).
DOI: 10.5061/dryad.941d66f/1
title: Offspring and Female Data

description: Data used in the analysis of offspring longevity/dispersal weight and traits measured at the level of the female. "EGGAGE" refers to age of egg-producer (pre-natal care) whilst "CAREAGE" represents age of the carer (post-natal care).
DOI: 10.5061/dryad.cn20jv8/1
title: Rosati_DiNicola_Buckholtz_Donation-task

description: Trial data from Donation task; key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.cn20jv8/2
title: Rosati_DiNicola_Buckholtz_Helping-task

description: Trial data from Helping task; key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.cn20jv8/3
title: Rosati_DiNicola_Buckholtz_Punishment-task

description: Trial data from Punishment task; key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.cn20jv8/4
title: Rosati_DiNicola_Buckholtz_Discounting-task

description: Trial data from Temporal Discounting task; key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.cn20jv8/5
title: Rosati_DiNicola_Buckholtz_GoNoGo-task

description: Trial data from Go/No-Go task; key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.cn20jv8/6
title: Rosati_DiNicola_Buckholtz_SocialResponsivity-task

description: Trial data from Social Responsivity task; key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.g7v1b.4
title: Data from: A framework for resolving cryptic species: a case study from the lizards of the Australian Wet Tropics
DOI: 10.5061/dryad.g7v1b.4/2.4
title: Supplementary Information
DOI: 10.5061/dryad.g7v1b.4/3.4
title: Appendix 1: Taxonomic revisions of the species groups
DOI: 10.5061/dryad.g983j23/1
title: Morphometric and behavioural data collected in blue tit pairs (7 traits)

description: Data collected in a wild population blue tits breeding in South-western Finland between 2003 and 2017. The names of males' and females' traits end, respectively with "_m" and "_f".  Wing, tarsus, head-bill (Head) and tail lengths are in mm and weight is in g. Handling aggression (Aggression) is on a 1-5 scale and breath rate (BR) is expressed as a number of breaths per second. The birds' age at the time of measurement is in years.
DOI: 10.5061/dryad.g983j23/2
title: Defence data collected in wild blue tits

description: Behavioural data collected from 2007 to 2017 in a wild population of blue tits breeding in South-western Finland. The number of times males and females attacked an observer during a 2 minutes test is reported, respectively in the columns"Nr_attacks_m" and "Nr_attacks_f". The square root of this number ("Attacks_m" and "Attacks_f".) was used for our analyses.The birds' age at the time of measurement is in years.
DOI: 10.5061/dryad.gb90p1c.1/1.1
title: Statistical Supplement

description: This is the Rcode and output from that code for the statistical analyses reported in this paper.
DOI: 10.5061/dryad.gb90p1c.1/2.1
title: stabilityRcode

description: R notebook used to generate the Statistical Supplement
DOI: 10.5061/dryad.gb90p1c.1/3.1
title: Data from moving slopes experiment

description: This is the dataset from experiments where each egg was placed on a surface then the slope gradually increased until the egg began to roll.
DOI: 10.5061/dryad.gb90p1c.1/4.1
title: Static slopes experiment comparing participants

description: This is a dataset to compare the ability of 12 naive subjects with a potentially biased subject (Jamie E Thompson; JET) in their ability to balance Razorbill and Commmon Murre eggs on surfaces with different slopes.
DOI: 10.5061/dryad.gb90p1c.1/5.1
title: Comparing stability on different slopes

description: This is the dataset from slope trials done by Jamie Thompson (JET) alone, to assess his ability to stabilize Razorbill and Common Murre eggs of different shapes on flat, sandpaper covered slopes of 20°, 30° and 40° above the horizontal.