cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/wct3y9t8cs
title: Infrared spectral data of dried and roasted cocoa (Theobroma cacao L.) for calibrating classification models of cocoa varieties and predicting theobromine and caffeine content

description: The dataset compiles the mid-infrared spectra of dried and roasted cocoa beans (Theobroma cacao L.), as well as their theobromine and caffeine content. The Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) spectroscopy technique was employed to spectrally characterize the dried and roasted cocoa samples, while high-performance liquid chromatography (HPLC) was used to quantify the theobromine and caffeine content. Based on the theobromine/caffeine ratio, the cocoa variety was determined.
This dataset provides valuable data for researchers, food scientists, and industry professionals to develop and calibrate robust multivariate statistical models, as well as machine learning and deep learning techniques, to classify different varieties of dried and roasted cocoa beans in real-time. Additionally, the infrared spectra could be used to develop precise models for simultaneously predicting both theobromine and caffeine content based on the spectral data. These calibrated models could significantly support decision-making processes within the cocoa industry, enabling real-time quality control and optimizing bean selection, blending, and product formulation processes. The dataset is organized in Excel sheets and structured according to experimental conditions and replicates, allowing for detailed exploration and analysis.
DOI: 10.17632/wct3y9t8cs.2
title: Infrared spectral data of dried and roasted cocoa (Theobroma cacao L.) for calibrating classification models of cocoa varieties and predicting theobromine and caffeine content

description: The dataset compiles the mid-infrared spectra of dried and roasted cocoa beans (Theobroma cacao L.), as well as their theobromine and caffeine content. The Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) spectroscopy technique was employed to spectrally characterize the dried and roasted cocoa samples, while high-performance liquid chromatography (HPLC) was used to quantify the theobromine and caffeine content. Based on the theobromine/caffeine ratio, the cocoa variety was determined.
This dataset provides valuable data for researchers, food scientists, and industry professionals to develop and calibrate robust multivariate statistical models, as well as machine learning and deep learning techniques, to classify different varieties of dried and roasted cocoa beans in real-time. Additionally, the infrared spectra could be used to develop precise models for simultaneously predicting both theobromine and caffeine content based on the spectral data. These calibrated models could significantly support decision-making processes within the cocoa industry, enabling real-time quality control and optimizing bean selection, blending, and product formulation processes. The dataset is organized in Excel sheets and structured according to experimental conditions and replicates, allowing for detailed exploration and analysis.
DOI: 10.17632/8ymgzv3zzk
title: Radiology Imaging Articles Dataset 2000–2025 from PubMed

description: The file contains metadata for scientific articles related to radiology and medical imaging.
Key Fields: Title, Authors, Journal,
Source : PubMed (https://pubmed.ncbi.nlm.nih.gov)
DOI: 10.17632/8ymgzv3zzk.1
title: Radiology Imaging Articles Dataset 2000–2025 from PubMed

description: The file contains metadata for scientific articles related to radiology and medical imaging.
Key Fields: Title, Authors, Journal,
Source : PubMed (https://pubmed.ncbi.nlm.nih.gov)
DOI: 10.17026/ar/b401gg
title: PAN-00142572 - cup (type unknown; East Gaulish terra sigillata, II-III)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00142572&lt;/p&gt;
description: Modified: 2025-10-20T10:54:58+02:00
DOI: 10.5281/zenodo.17864251
title: data base
DOI: 10.5281/zenodo.17864252
title: data base
DOI: 10.15468/dl.p8gkf5
title: Occurrence Download

description: A dataset containing 629 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Spider specimen data from Satoyama landscapes, including abandoned farmland, collected over multiple periods in Machida City, Tokyo"
 ]
}

 The dataset includes 629 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040091-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/kc8cmw9p2w.2
title: Vacuum Information Density as the Fundamental Geometric Scalar: UIDT v3.5: A Proposed Theoretical Framework for the Yang–Mills Mass Gap and Gamma-Scaling Unification

description: The Unified Information-Density Theory (UIDT) version 3.5.6 synthesizes the framework into an "Architecture of Reality," proposing that vacuum information density S(x) generates the Yang–Mills mass gap through non-minimal coupling.
This revision advances the theory from a mathematical construct to a phenomenologically constrained model anchored by three independent pillars: QFT Foundation, Cosmological Harmony, and Laboratory Verification.

Canonical parameters are derived self-consistently, yielding Δ = 1.710 ± 0.015 GeV, κ = 0.500 ± 0.008, and γ ≈ 16.339. These values demonstrate numerical closure (residuals &lt; 10⁻¹⁴) and consistency with Lattice QCD continuum limits.

Version 3.5.6 integrates a 99-step Hierarchical RG Suppression mechanism, which resolves the intermediate vacuum energy discrepancy, reducing the total 10¹²⁰ mismatch to a residual factor of ~2.3 compatible with observations [1]. Cosmological calibration via 2025 DESI DR2 and JWST CCHP fixes the holographic scale at λ = 0.66 nm. The previous 10¹⁰ geometric scaling gap is addressed via a modified γ¹¹ scaling hypothesis. A redshift-dependent gamma evolution, γ(z), provides a natural mechanism for dynamical dark energy (w(z) ≠ -1),
consistent with DESI’s preference for phantom-crossing models [2].

Scientific assessment classifies results as Category A (mathematically robust derivations), Category B (lattice QCD alignment),
Category C (cosmological calibration), and Category D (unverified predictions) [3]. UIDT v3.5.6 represents a specific, falsifiable framework unifying quantum field theory with cosmological observations.

This revision formally supersedes previous iterations, ensuring data integrity and integrating the Supermassive Dark Seeds (SMDS) 
model for early galaxy formation.
DOI: 10.17632/68vpbdrttm
title: Geochemical data of the surface dune sands and sediment samples from two cores from the Tengger Desert

description: Geochemical data of the surface dune sands and sediment samples from two cores from the Tengger Desert
DOI: 10.17632/68vpbdrttm.1
title: Geochemical data of the surface dune sands and sediment samples from two cores from the Tengger Desert

description: Geochemical data of the surface dune sands and sediment samples from two cores from the Tengger Desert
DOI: 10.15468/dl.jxe55b
title: Occurrence Download

description: A dataset containing 2803 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rapana venosa"
 ]
}

 The dataset includes 2803 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040092-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17862974
title: Dataset for the manuscript: Microbial Nitrogen Pathways Reshape the Ocean's Nitrogen-Carbon Link Across Oligotrophic to High-Nutrient Gyres

description: This dataset contains all the source data and supplementary data files supporting the research article entitled “Microbial Nitrogen Pathways Reshape the Ocean’s Nitrogen-Carbon Link Across Oligotrophic to High-Nutrient Gyres”, submitted to Global Biogeochemical Cycles. 

The dataset comprises the following files:





Supplementary data_Liu et al_2025: This Microsoft Excel workbook contains the source data for Figures 1-8  of the associated article. Worksheets include: NPP, NH4+ and urea oxidation and NO3-, NH4+ and Urea uptake rates (in-situ measured and calculated rates), nutrients concentrations (ammonium, urea, nitrate, nitrite), and CTD profiles (temperature, salinity, dissolved oxygen, PAR)



Methods:The methodologies for data collection (e.g., ¹⁵N tracer experiments, CTD casts) and the subsequent statistical analyses are described in full in the Materials and Methods section of the associated article.

License & Citation:





License: This dataset is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.




How to Cite: If you use this dataset, you must cite both the dataset and the supporting article as follows:




  Liu, Qian; Hou, Xing; Zhou, Nan; Ren, Yudong; Zhang, Kaidong; Wu, Nian; Xu, Wenqi; Liu, Sumei. (2025). *Supplementary data_Liu et al_2025 [Data set]. Zenodo. https://doi.org/10.5281/zenodo.17862974 >
DOI: 10.5281/zenodo.17862973
title: Dataset for the manuscript: Microbial Nitrogen Pathways Reshape the Ocean's Nitrogen-Carbon Link Across Oligotrophic to High-Nutrient Gyres

description: This dataset contains all the source data and supplementary data files supporting the research article entitled “Microbial Nitrogen Pathways Reshape the Ocean’s Nitrogen-Carbon Link Across Oligotrophic to High-Nutrient Gyres”, submitted to Global Biogeochemical Cycles. 

The dataset comprises the following files:





Supplementary data_Liu et al_2025: This Microsoft Excel workbook contains the source data for Figures 1-8  of the associated article. Worksheets include: NPP, NH4+ and urea oxidation and NO3-, NH4+ and Urea uptake rates (in-situ measured and calculated rates), nutrients concentrations (ammonium, urea, nitrate, nitrite), and CTD profiles (temperature, salinity, dissolved oxygen, PAR)



Methods:The methodologies for data collection (e.g., ¹⁵N tracer experiments, CTD casts) and the subsequent statistical analyses are described in full in the Materials and Methods section of the associated article.

License & Citation:





License: This dataset is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.




How to Cite: If you use this dataset, you must cite both the dataset and the supporting article as follows:




  Liu, Qian; Hou, Xing; Zhou, Nan; Ren, Yudong; Zhang, Kaidong; Wu, Nian; Xu, Wenqi; Liu, Sumei. (2025). *Supplementary data_Liu et al_2025 [Data set]. Zenodo. https://doi.org/10.5281/zenodo.17862974 >
DOI: 10.17632/nfxnk7td85
title: PLETHORA-autophagy axis activates organ regeneration through ROS modulation

description: This dataset contains all the original confocal micrographs, stereozoom micrographs, and GraphPad Prism files of the data points used for quantification and statistical analysis of images, RNA RT-qPCR, ChIP-qPCR, and regeneration assays reported in the study.
DOI: 10.17632/nfxnk7td85.1
title: PLETHORA-autophagy axis activates organ regeneration through ROS modulation

description: This dataset contains all the original confocal micrographs, stereozoom micrographs, and GraphPad Prism files of the data points used for quantification and statistical analysis of images, RNA RT-qPCR, ChIP-qPCR, and regeneration assays reported in the study.
DOI: 10.6084/m9.figshare.29929811
title: Volunteering Trajectories across Crises: Data and Codes

description: Dataset for replication of analysis in the article "Volunteering Trajectories across Crises: Resilience, Persistence and Spill-over between Ordinary and Crisis Volunteering".If interest in data set besides replication of results, contact either Jonas Toubøl (jt@soc.ku.dk) or Hjalmar Bang Carlsen (hc@soc.ku.dk).
DOI: 10.6084/m9.figshare.29929811.v1
title: Volunteering Trajectories across Crises: Data and Codes

description: Dataset for replication of analysis in the article "Volunteering Trajectories across Crises: Resilience, Persistence and Spill-over between Ordinary and Crisis Volunteering".If interest in data set besides replication of results, contact either Jonas Toubøl (jt@soc.ku.dk) or Hjalmar Bang Carlsen (hc@soc.ku.dk).
DOI: 10.18712/nsd-nsd3313-v2
title: The European Student survey - Eurostudent VIII

description: Eurostudent is a survey conducted in several European countries. The purpose is to collect comparable data from students in higher education in Europe. This includes not only students' academic situations but also their socioeconomic backgrounds, income and expenses, living arrangements, and mobility. The survey also provides insights into study exchanges abroad. The European Student Survey has been conducted in Norway across eight rounds, with the first taking place in 2010.
DOI: 10.17632/f7v8rtr6wz
title: Original WB images in Age-dependent deficiency in mitochondrial unfolded protein response signaling leads to transient insult-induced cognitive impairment
DOI: 10.15468/dl.3hxt9j
title: Occurrence Download

description: A dataset containing 16125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Turnicidae)",
 "Geometry POLYGON((-25.3605576 -34.8220024,63.4957581 -34.8220024,63.4957581 37.3404121,-25.3605576 37.3404121,-25.3605576 -34.8220024))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is one of (Africa)"
 ]
}

 The dataset includes 16125 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040094-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/f7v8rtr6wz.1
title: Original WB images in Age-dependent deficiency in mitochondrial unfolded protein response signaling leads to transient insult-induced cognitive impairment
DOI: 10.17632/xht8h5d8rh
title: Larix olgensis

description: Bacterial and Fungal OTU
DOI: 10.17632/xht8h5d8rh.1
title: Larix olgensis

description: Bacterial and Fungal OTU
DOI: 10.17632/ftwfv27jtc
title: Supporting information

description: Supporting information

RNA Sequencing Reveals Stable Reference Genes for RT-qPCR Monitoring of Lactiplantibacillus plantarum in Fermented Milk
DOI: 10.17632/ftwfv27jtc.1
title: Supporting information

description: Supporting information

RNA Sequencing Reveals Stable Reference Genes for RT-qPCR Monitoring of Lactiplantibacillus plantarum in Fermented Milk
DOI: 10.15468/dl.c92avx
title: Occurrence Download

description: A dataset containing 3388356 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Pinus, Euryale, Trapa, Tetradium)"
 ]
}

 The dataset includes 3388356 records from 4021 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040078-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive291.20240916.9.1
title: Oceanisphaera litoralis Romanenko et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive292.20240510.9
title: Oceanisphaera donghaensis Park et al. 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive293.20240510.9
title: Oceanisphaera sediminis Shin et al. 2012

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive294.20240916.9.1
title: Tolumonas auensis Fischer-Romero et al. 1996

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive295.20240916.9.1
title: Tolumonas osonensis Caldwell et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive296.20240510.9
title: Zobellella denitrificans Lin and Shieh 2006

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive297.20240916.9.1
title: Achromobacter xylosoxidans subsp. xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive298.20240510.9
title: Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi and Yano 1981 emend. Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive299.20240916.9.1
title: Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi and Yano 1981 emend. Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive300.20240916.9.1
title: Achromobacter xylosoxidans subsp. xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive301.20240916.9.1
title: Achromobacter xylosoxidans subsp. xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive302.20240510.9
title: Achromobacter xylosoxidans subsp. xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.yhsaeh
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Geometry POLYGON((-81.61577 -4.89936,-75.30811 -4.89936,-75.30811 1.63231,-81.61577 1.63231,-81.61577 -4.89936))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Myrmecophaga tridactyla Linnaeus, 1758"
 ]
}

 The dataset includes 70 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059279-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive303.20240916.9.1
title: Achromobacter deleyi Vandamme et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive304.20240510.9
title: Achromobacter xylosoxidans subsp. xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive305.20240510.9
title: Achromobacter xylosoxidans subsp. xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive306.20240510.9
title: Achromobacter xylosoxidans subsp. xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive307.20240510.9
title: Achromobacter xylosoxidans subsp. xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive308.20240510.9
title: Achromobacter xylosoxidans subsp. xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive309.20240916.9.1
title: Achromobacter ruhlandii (Packer and Vishniac 1955) Yabuuchi et al. 1998 emend. Vandamme et al. 2013

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive311.20240916.9.1
title: Achromobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive312.20240510.9
title: Achromobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive313.20240510.9
title: Achromobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive314.20240510.9
title: Achromobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive315.20240510.9
title: Achromobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive316.20240916.9.1
title: Achromobacter denitrificans (Rüger and Tan 1983) Coenye et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive317.20240916.9.1
title: Achromobacter denitrificans (Rüger and Tan 1983) Coenye et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive318.20240916.9.1
title: Achromobacter denitrificans (Rüger and Tan 1983) Coenye et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive319.20240510.9
title: Corynebacterium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive320.20240916.9.1
title: Achromobacter piechaudii (Kiredjian et al. 1986) Yabuuchi et al. 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive321.20240510.9
title: Achromobacter spanius Coenye et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive322.20240916.9.1
title: Achromobacter insolitus Coenye et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive323.20240916.9.1
title: Achromobacter spanius Coenye et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.