cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5637567
title: PGxMine

description: This describes the output files for the PGxMine project. The code for this viewer is available in the PGxMine Github repo if you want to run it independently. Each file is a tab-delimited file with a header, no comments and no quoting. You likely want <strong>pgxmine_collated.tsv</strong> if you just want the list of chemical/variant assocations. If you want the supporting sentences, look at <strong>pgxmine_sentences.tsv</strong>. You can use the <em>matching_id</em> column to connect the two files. If you want to dig further and are okay with a higher false positive rate, look at <strong>pgxmine_unfiltered.tsv</strong>. <strong>pgxmine_collated.tsv:</strong> This contains the chemical/variant associations with citation counts supporting them. It contains the normalized chemical, variant and where appropriate gene names with identifiers for PharmGKB, dbSNP and Entrez. <strong>pgxmine_sentences.tsv:</strong> This contains the supporting sentences for the chemical/variant associations in the collated file. Each row is a single supporting sentence for one association. This file contains information on the source publication (e.g. journal, publication date, etc), the actual sentence and the chemical/variant association extracted. <strong>pgxmine_unfiltered.tsv:</strong> This is the combined raw output of the createKB.py script across all of PubMed, Pubmed Central Open Access and PubMed Central Author Manuscript Collection. It contains every predicted relation with a prediction score above 0.5. So this may contain many false positives. Each row contain information on the publication (e.g. journal, publication date, etc) along with the sentence and the specific chemical/variant association.
DOI: 10.25451/flinders.16881934
title: Motivational interviewing and anorexia nervosa dataset

description: This dataset comprises survey and interview results from an investigation into the efficacy of motivational interviewing in engaging individuals with anorexia nervosa in treatment. Responses from 47 participants (2 male and 45 female aged between 16 and 37 years) are arranged in a database.<br><br>Participants were part of an inpatient anorexia nervosa population, assessed over three waves; at admission to hospital (baseline), and at 2 and 6 week follow up. Assessment were conducted face to face for participants in hospital and via the telephone for those who had been discharged.<br><br>The Anorexia Nervosa Stages of Change Questionnaire (ANSOCQ) was used for the study.<br><br>Date coverage: 2005-10-01 - 2008-08-01<br>Location: Adelaide, South Australia, Australia
DOI: 10.25451/flinders.16881934.v1
title: Motivational interviewing and anorexia nervosa dataset

description: This dataset comprises survey and interview results from an investigation into the efficacy of motivational interviewing in engaging individuals with anorexia nervosa in treatment. Responses from 47 participants (2 male and 45 female aged between 16 and 37 years) are arranged in a database.<br><br>Participants were part of an inpatient anorexia nervosa population, assessed over three waves; at admission to hospital (baseline), and at 2 and 6 week follow up. Assessment were conducted face to face for participants in hospital and via the telephone for those who had been discharged.<br><br>The Anorexia Nervosa Stages of Change Questionnaire (ANSOCQ) was used for the study.<br><br>Date coverage: 2005-10-01 - 2008-08-01<br>Location: Adelaide, South Australia, Australia
DOI: 10.4226/86/59277e5072833
title: Cosmopolitan Development: The Impacts of International Volunteering Questionnaire Survey Data
DOI: 10.4226/86/59277c7b72832
title: Cosmopolitan Development: The Impacts of International Volunteering Semi-Structured Interview Data
DOI: 10.6084/m9.figshare.16915669
title: Fish out of water: genomic insights into persistence of rainbowfish populations in the desert

description: Msplendidatatei.vcf contain information about 20,254 high quality unlinked SNPs for 351 samples and 15 replicates<br><br><br><br>
DOI: 10.4226/86/59277fc972834
title: Nerve firing rates and tissue strains evoked by various loading conditions in the guinea pig large intestine
DOI: 10.5281/zenodo.5637581
title: Data set for the paper titled "Revisiting Rist diagram for predicting operating conditions in blast furnaces with multiple injections"

description: Six full data sets of different blast furnaces operations (air-blown and oxygen-blown), specifying the composition of all streams.
DOI: 10.4226/86/5927813e72835
title: Australian Longitudinal Study of Ageing Datasets
DOI: 10.25959/fapp-w279
title: Carinascincus ocellatus HiC DNA sequence data

description: HiC DNA sequence data from a male Carinascincus ocellatus from Miena, Tasmania
DOI: 10.4121/16864147
title: LiDAR Datasets for Hypogenic and Epigenic Caves in Bahia, Brazil (2019)

description: 7 LiDAR datasets collected in a fieldwork expedition to hypogenic and epigenic caves in the State of Bahia, Brazil (2019). The data consists of a dense point clouds (resolution of around 3-10 cm), and the size of the caves are 10s to 100s of meters. The data is collected with the mobile LiDAR device (GeoSLAM ZEB REVO RT). The cave are located in a similar area, but here are the more precise geo-location of all the caves (in Latitude, Longitude):Calixto: (-13.320802, -41.091798)Ioio: (-12.39495042, -41.563312)Torrinha: (-12.348743, -41.603489)Lapinha Iramaia: (-13.320802, -41.091798)Lapinha: (-12.4645320, -40.980800)Marota: (-12.620955, -41.013181)Lapa de Bode: (-12.872074, -41.082733)
DOI: 10.4121/16832254
title: LiDAR Dataset for Hypogenic Morro Vermelho Cave in Bahia, Brazil (2018)

description: LiDAR dataset collected in a 2018 fieldwork expedition to hypogenic (and epigenic) cave(s) in the State of Bahia, Brazil. The data consists of a dense point clouds (resolution of around 3-10 cm), and the size of the cave is around 50-100 meter in length. The data is collected with the mobile LiDAR device (GeoSLAM ZEB REVO).
DOI: 10.4121/16912183
title: Dataset for "Plant traits determining biogeomorphic landscape dynamics: a study on clonal expansion strategies driving cliff formation at marsh edges"

description: This dataset contains i) the clonal expansion traits of three marsh species (<i>Spartina anglica</i>, <i>Scirpus maritimus</i>, and <i>Phragmites australis</i>) at marsh edges in a series of mesocosm experiments; and ii) cliff formation at mimicked marsh edges (<i>S. anglica</i> and <i>S. maritimus</i>, that with contrasting clonal expansion traits) in a flume experiment. This study examined how species-specific differences in expansion strategy, i.e. clonal step-length of laterally expanding tillers, both respond to sediment type and drive cliff formation and persistence.
DOI: 10.4121/16893439
title: Data underlying the manuscript "Another look at asymmetry in the connection between ENSO and the NAO"

description: <b>This is the primary script, initial conditions, and boundary layer SST for an article going to be submitted to AMS JC, named “Another look at asymmetry in the connection between ENSO and the NAO”</b>. We conducted atmospheric modeling experiments using the European Center-Hamburg Model version 5.4 (ECHAM-5.4, Roeckner et al. 2003) from the Max-Plank Institute. The ECHAM5.4 was run with 1.875 lon*1.875lat horizontal spacing, 19 vertical levels from the surface to 10 hPa. In the control experiment (CTL), 1955-2009 monthly historical SST and SIC were used as the lower boundary condition and run for 55 years, including a 4-year spin-up. To reduce the potential impact of ENSO and NAO signals, 20 weak or neutral ENSO and NAO years (the normalized Niño-3.4 and NAO indices are between -0.7 and 0.7) were selected, including 1958, 1960, 1961, 1966, 1967, 1969, 1974, 1977, 1979, 1980, 1981, 1985, 1987, 1990, 1996, 2000, 2001, 2003, 2004, and 2006. To examine the influence of different types of ENSO on the NAO, we further performed nine sensitivity experiments covering only the period from December 1<sup>st</sup> to February 28<sup>th</sup> in the 20 sample years. The sensitivity-minus-CTL differences represent the atmospheric response to the SST anomalies in the different ENSO winters. The numerical result dataset is too large to archive, we provided the initial conditions for 20 sample years and the boundary layer conditions for the different sensitivity experiments. The folder contains the boundary layer condition for each sensitivity experiment is named after the experiment name. The initial conditions begin with "rerun".<br>
DOI: 10.6073/pasta/430a9feb191eb1bd711f6aef7912a700
title: The structural and nutrient chemistry of decomposing cacti in the Sonoran Desert

description: Cacti are an abundant taxa in the Sonoran Desert, but most research focuses on their population dynamics and physiology and relatively little is currently known regarding their role in desert biogeochemical cycles, particularly regarding their decomposition dynamics. A better understanding of cactus decomposition and their role in ecosystem processes is important, considering there are many threatened and endangered species within this group. In this study, we decomposed two common species of cacti, Opuntia chlorotica (pancake prickly pear) and Cylindropuntia acanthocarpa (buckhorn cholla), in the Sonoran Desert of Arizona, U.S.A. Mass loss, water loss, nutrient content, and structural and metabolic chemistry were measured at regular intervals over the course of one year of decomposition. Our results demonstrate the contribution of cactus decomposition to carbon and nutrient recycling, with dynamics that are overall comparable to those of woody and herbaceous leaf litter for most elements. We enumerate, however, a particularly important role in calcium dynamics in comparison to woody and herbaceous leaf litter. Despite different structural characteristics, both cactus species released nutrients at a statistically equivalent rate, though with altered timing of net immobilization and mineralization due to temporary mass gain and associated nutrient immobilization in cholla. The release of nutrients and water from decaying cacti have a modest influence on underlying soil CO2 flux, secondary to a more dominant influence of overall soil temperature and moisture. Thus, our data provide a baseline for understanding the decay dynamics of two common cactus species and suggest that, while there is still a lack of information pertaining to cactus decomposition, the similarities between leaf litter and cacti will aid our predictions of the consequences of future changes in cactus populations.
DOI: 10.23645/epacomptox.6062503
title: ToxCast and Tox21 Data Spreadsheet

description: A spreadsheet of EPA's analysis of the chemicals screened through ToxCast and the Tox21 collaboration which includes EPA's activity calls from the screening of over 8000 chemicals.
DOI: 10.23645/epacomptox.6062503.v5
title: ToxCast and Tox21 Data Spreadsheet

description: A spreadsheet of EPA's analysis of the chemicals screened through ToxCast and the Tox21 collaboration which includes EPA's activity calls from the screening of over 8000 chemicals.
DOI: 10.5281/zenodo.5637601
title: Dataset of dv/v and CC

description: The data stored here is the results of dv/v and CC in the paper ‘Fluid migration before and during slow earthquakes in shallow Nankai subduction zone’, by Takashi Tonegawa, Shunsuke Takemura, Suguru Yabe, and Kiyoshi Yomogida. The format is described in README file.
DOI: 10.23645/epacomptox.6062494
title: ToxCast and Tox21 Concentration Response Plots

description: Concentration response plots for all of the ToxCast and Tox21 assays.
DOI: 10.23645/epacomptox.6062494.v6
title: ToxCast and Tox21 Concentration Response Plots

description: Concentration response plots for all of the ToxCast and Tox21 assays.
DOI: 10.23645/epacomptox.6062494.v5
title: ToxCast and Tox21 Concentration Response Plots

description: Concentration response plots for all of the ToxCast and Tox21 assays.
DOI: 10.5281/zenodo.5637605
title: Dataset of dv/v and CC

description: The data stored here is the results of dv/v and CC in the paper ‘Fluid migration before and during slow earthquakes in shallow Nankai subduction zone’, by Takashi Tonegawa, Shunsuke Takemura, Suguru Yabe, and Kiyoshi Yomogida. The format is described in README file.
DOI: 10.5281/zenodo.4663683
title: Dataset of dv/v and CC

description: The data stored here is the results of dv/v and CC in the paper ‘Fluid migration before and during slow earthquakes in shallow Nankai subduction zone’, by Takashi Tonegawa, Shunsuke Takemura, Suguru Yabe, and Kiyoshi Yomogida. The format is described in README file.
DOI: 10.23645/epacomptox.6062530
title: ToxCast & Tox21 high-throughput assay information

description: ToxCast high-throughput assay information including assay annotation user guide; assay target information; study design information and quality statistics on the assays.
DOI: 10.23645/epacomptox.6062530.v6
title: ToxCast & Tox21 high-throughput assay information

description: ToxCast high-throughput assay information including assay annotation user guide; assay target information; study design information and quality statistics on the assays.
DOI: 10.23645/epacomptox.6062530.v5
title: ToxCast & Tox21 high-throughput assay information

description: ToxCast high-throughput assay information including assay annotation user guide; assay target information; study design information and quality statistics on the assays.
DOI: 10.23645/epacomptox.6062479
title: ToxCast and Tox21 Summary Files

description: Data for a single chemical endpoint pair for thousands of chemicals and 821 assay endpoints for 20 variables such as the activity or hit call/activity concentrations/whether the chemical was tested in a specific assay/etc.
DOI: 10.23645/epacomptox.6062479.v5
title: ToxCast and Tox21 Summary Files

description: Data for a single chemical endpoint pair for thousands of chemicals and 821 assay endpoints for 20 variables such as the activity or hit call/activity concentrations/whether the chemical was tested in a specific assay/etc.
DOI: 10.23729/62e89f08-ffa9-43d3-b8a3-28d8896e038a
title: Time-series of plant area density (PAD) collected in fragmented Amazonian forests

description: These data consist of a time-series of Plant Area Density (PAD) extracted from Terrestrial Laser Scanning (TLS) point clouds. The measurements were made in 11 different dates, between 26th April and 16th October 2019, using a RIEGL VZ-400i. The data were collected in three transects of Central Amazonian forests, located at the Biological Dynamics of Forest Fragments (BDFF) Project. The location of the transects is provided in shapefiles located in the zipped folder "Transects_location_shapefiles.zip". The TLS point clouds were processed using AMAPVox software (Vincent et al., 2021), where PAD values were estimated in voxels of 1m^3. Data structure: x = Horizontal x coordinate of the voxel in meters based on a local coordinate x = 0 y = Horizontal y coordinate of the voxel in meters based on a local coordinate y = 0 z = Vertical z coordinate of the voxel in metersbased on a local coordinate z = 0 gdist = Distance from the ground in meters. Differs from z because the terrain elevation is not flat PAD = Plant Area Density derived from TLS measurements (m2 m-3) Repeat = Measurement i of PAD during the repeat TLS campaign i, where i varies between 1 and 11 in the transects "South" and "North" and between 1 and 10 in the transect "Center". Date = Date of the TLS measurement Dist_edge = Distance from the closest forest fragment margin in meters Transect = Name of the transect. It contains "North", "South" and "Center" References: VINCENT, Gregoire; PIMONT, François; VERLEY, Philippe, 2021, "A note on PAD/LAD estimators implemented in AMAPVox 1.7", https://doi.org/10.23708/1AJNMP, DataSuds, V1
DOI: 10.23645/epacomptox.6062623.v6
title: ToxCast Database (invitroDB)

description: ToxCast high-throughput assay information including assay annotation user guide, assay target information, study design information and quality statistics on the assays.
DOI: 10.5281/zenodo.5637613
title: Base de datos: Videojuegos y Violencia

description: Base de datos Videojuegos y Violencia: Un mapeo sistemático Autor: Guillermo Isaac Lizárraga Hernández
DOI: 10.5281/zenodo.5637612
title: Base de datos: Videojuegos y Violencia

description: Base de datos Videojuegos y Violencia: Un mapeo sistemático Autor: Guillermo Isaac Lizárraga Hernández
DOI: 10.5517/ccdc.csd.cc229bsj
title: CCDC 1915607: Experimental Crystal Structure Determination

description: Related Article: Ting Wang, Shangfeng Wang, Zhiyong Liu, Zuyang He, Peng Yu, Mengyao Zhao, Hongxin Zhang, Lingfei Lu, Zhengxin Wang, Ziyu Wang, Weian Zhang, Yong Fan, Caixia Sun, Dongyuan Zhao, Weimin Liu, Jean-Claude G. Bünzli, Fan Zhang|2021|Nat.Mater|20|1571|doi:10.1038/s41563-021-01063-7
DOI: 10.5517/ccdc.csd.cc229btk
title: CCDC 1915608: Experimental Crystal Structure Determination

description: Related Article: Ting Wang, Shangfeng Wang, Zhiyong Liu, Zuyang He, Peng Yu, Mengyao Zhao, Hongxin Zhang, Lingfei Lu, Zhengxin Wang, Ziyu Wang, Weian Zhang, Yong Fan, Caixia Sun, Dongyuan Zhao, Weimin Liu, Jean-Claude G. Bünzli, Fan Zhang|2021|Nat.Mater|20|1571|doi:10.1038/s41563-021-01063-7
DOI: 10.6084/m9.figshare.16916308
title: Additional file 1 of River discharge prediction for ungauged mountainous river basins during heavy rain events based on seismic noise data

description: Additional file 1. An additional file for the observed noise density (1–2 Hz), simulated discharge, and predicted discharge at/near N.FGTH and N.MGMH stations during the events of 10–23 July 2004, 7–16 September 2015, and 10–15 October 2019 is provided.
DOI: 10.6084/m9.figshare.16916308.v1
title: Additional file 1 of River discharge prediction for ungauged mountainous river basins during heavy rain events based on seismic noise data

description: Additional file 1. An additional file for the observed noise density (1–2 Hz), simulated discharge, and predicted discharge at/near N.FGTH and N.MGMH stations during the events of 10–23 July 2004, 7–16 September 2015, and 10–15 October 2019 is provided.
DOI: 10.6084/m9.figshare.16916292
title: Additional file 11 of Metagenomic insights into the microbial communities of inert and oligotrophic outdoor pier surfaces of a coastal city

description: Additional file 11: Table S4. Influence of taxonomy, surface type, and geography on the relative abundance of COG categories.
DOI: 10.6084/m9.figshare.16916292.v1
title: Additional file 11 of Metagenomic insights into the microbial communities of inert and oligotrophic outdoor pier surfaces of a coastal city

description: Additional file 11: Table S4. Influence of taxonomy, surface type, and geography on the relative abundance of COG categories.
DOI: 10.6084/m9.figshare.16916298.v1
title: Additional file 13 of Metagenomic insights into the microbial communities of inert and oligotrophic outdoor pier surfaces of a coastal city

description: Additional file 13: Table S5. Influence of taxonomy, surface type, and geography on the relative abundance of the types of putative BGCs.
DOI: 10.6084/m9.figshare.16916298
title: Additional file 13 of Metagenomic insights into the microbial communities of inert and oligotrophic outdoor pier surfaces of a coastal city

description: Additional file 13: Table S5. Influence of taxonomy, surface type, and geography on the relative abundance of the types of putative BGCs.
DOI: 10.6084/m9.figshare.16916313
title: Additional file 17 of Metagenomic insights into the microbial communities of inert and oligotrophic outdoor pier surfaces of a coastal city

description: Additional file 17: Table S6. Taxonomic classification of the MAGs according to the GTDB database.
DOI: 10.6084/m9.figshare.16916319
title: Additional file 2 of Metagenomic insights into the microbial communities of inert and oligotrophic outdoor pier surfaces of a coastal city

description: Additional file 2: Table S1. List of representative corrosion-related bacteria.
DOI: 10.6084/m9.figshare.16916319.v1
title: Additional file 2 of Metagenomic insights into the microbial communities of inert and oligotrophic outdoor pier surfaces of a coastal city

description: Additional file 2: Table S1. List of representative corrosion-related bacteria.
DOI: 10.6084/m9.figshare.14254097.v1
title: Additional file 2 of Masting by beech trees predicts the risk of Lyme disease

description: Additional file 2: Table S1. Raw data used for all statistical analyses.
DOI: 10.6084/m9.figshare.14254097
title: Additional file 2 of Masting by beech trees predicts the risk of Lyme disease

description: Additional file 2: Table S1. Raw data used for all statistical analyses.
DOI: 10.6084/m9.figshare.13788231
title: Additional file 2 of The production of excretory-secretory molecules from Heligmosomoides polygyrus bakeri fourth stage larvae varies between mixed and single sex cultures

description: Additional file 2: Table S2. Characteristics of proteins unique for ES of H. polygyrus bakeri females, males and mix of both.
DOI: 10.6084/m9.figshare.13788231.v1
title: Additional file 2 of The production of excretory-secretory molecules from Heligmosomoides polygyrus bakeri fourth stage larvae varies between mixed and single sex cultures

description: Additional file 2: Table S2. Characteristics of proteins unique for ES of H. polygyrus bakeri females, males and mix of both.
DOI: 10.6084/m9.figshare.14299363.v2
title: Additional file 1 of Occurrence of Phlebotomine sand flies (Diptera: Psychodidae) in the northeastern plain of Italy

description: Additional file 1: Table S1. List of sampling sites, with geographical coordinates and environmental description and monitoring years.
DOI: 10.6084/m9.figshare.14299369.v1
title: Additional file 3 of Occurrence of Phlebotomine sand flies (Diptera: Psychodidae) in the northeastern plain of Italy

description: Additional file 3: Table S2. Number of sites positive for Phlebotomine sand flies in each environmental type.
DOI: 10.6084/m9.figshare.14299363
title: Additional file 1 of Occurrence of Phlebotomine sand flies (Diptera: Psychodidae) in the northeastern plain of Italy

description: Additional file 1: Table S1. List of sampling sites, with geographical coordinates and environmental description and monitoring years.
DOI: 10.6084/m9.figshare.14299360.v1
title: Additional file 2 of Occurrence of Phlebotomine sand flies (Diptera: Psychodidae) in the northeastern plain of Italy

description: Additional file 1: Table S1. List of sampling sites, with geographical coordinates and environmental description and monitoring years.
DOI: 10.6084/m9.figshare.14299369
title: Additional file 3 of Occurrence of Phlebotomine sand flies (Diptera: Psychodidae) in the northeastern plain of Italy

description: Additional file 3: Table S2. Number of sites positive for Phlebotomine sand flies in each environmental type.
DOI: 10.6084/m9.figshare.16916500
title: Additional file 24 of Transcriptomic analysis of the Myxococcus xanthus FruA regulon, and comparative developmental transcriptomic analysis of two fruiting body forming species, Myxococcus xanthus and Myxococcus stipitatus

description: Additional file 24: WT M. xanthus read counts and DEseq data
DOI: 10.6084/m9.figshare.16916503.v1
title: Additional file 25 of Transcriptomic analysis of the Myxococcus xanthus FruA regulon, and comparative developmental transcriptomic analysis of two fruiting body forming species, Myxococcus xanthus and Myxococcus stipitatus

description: Additional file 25: DEseq data for timepoint comparisons between ΔfruA and WT M. xanthus
DOI: 10.6084/m9.figshare.16916497.v1
title: Additional file 23 of Transcriptomic analysis of the Myxococcus xanthus FruA regulon, and comparative developmental transcriptomic analysis of two fruiting body forming species, Myxococcus xanthus and Myxococcus stipitatus

description: Additional file 23:. New and old locus name correspondences