cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12159060
title: Petrogenesis of the early Permian A-type granites in the Halajun region, southwest Tianshan, western Xinjiang, NW China: implications for geodynamics of Tarim large igneous province

description: Formation of a large igneous province, an explosive magmatic event in earth, is intimately related to geodynamic processes. The Tarim large igneous province, a famous representative in China, contains A-type granites. However, the petrogenesis of the A-type granites is debated. Some researchers think that the A-type granites are developed through extensive fractionation of magma derived from partial melting of newly underplated or gabbroic rocks. Others insist that the A-type granites are developed through intensive fractional crystallization of plume-derived mafic magma. Here, we present zircon U–Pb ages and whole-rock geochemical and Sr–Nd isotopic data for the Kezilekezitage, Keziertuo, Tamu, and Halajun II intrusions in northwest Tarim to elucidate their petrogenesis and geodynamic implications. Zircon U–Pb dating yielded crystallization ages of the Kezilekezitage, Keziertuo, and Halajun II intrusions of 275.1 ± 3.1 Ma (MSWD = 1.14), 274.8 ± 1.8 (MSWD = 0.46) and 275.6 ± 0.7 (MSWD = 1.04), respectively. The whole-rock geochemistry of the four intrusions is characterized by REE and HFSE enrichment, Ba, Sr, P, Ti, and Eu depletion, εNd (t) values of – 1.2 to +0.3, two-stage Nd model ages (T<sub>2DM</sub>) of 1.14–1.02 Ga, and an A1-type granite affinity. Whole-rock zircon geothermometry indicates a high formation temperature of 721–924°C. It is concluded that these A-type granites were generated by partial melting of Neoproterozoic OIB-like rocks, coupled with extensive fractional crystallization and minor crustal contamination. The production of the A-type granites at <i>ca</i>. 275 Ma represented the termination and greatest degree of lithospheric thinning during large igneous province formation.
DOI: 10.6084/m9.figshare.20023123.v1
title: Additional file 3 of Comparative proteomic analysis on chloroplast proteins provides new insights into the effects of low temperature in sugar beet

description: Additional file 3: Figure S1. Protein quality control analysis of different samples. a The correlation between the control and 24 h treatment. b Examination of peptide intensity distribution in different samples.
DOI: 10.25582/data.2023-01.2723541/2291726
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.12159060.v1
title: Petrogenesis of the early Permian A-type granites in the Halajun region, southwest Tianshan, western Xinjiang, NW China: implications for geodynamics of Tarim large igneous province

description: Formation of a large igneous province, an explosive magmatic event in earth, is intimately related to geodynamic processes. The Tarim large igneous province, a famous representative in China, contains A-type granites. However, the petrogenesis of the A-type granites is debated. Some researchers think that the A-type granites are developed through extensive fractionation of magma derived from partial melting of newly underplated or gabbroic rocks. Others insist that the A-type granites are developed through intensive fractional crystallization of plume-derived mafic magma. Here, we present zircon U–Pb ages and whole-rock geochemical and Sr–Nd isotopic data for the Kezilekezitage, Keziertuo, Tamu, and Halajun II intrusions in northwest Tarim to elucidate their petrogenesis and geodynamic implications. Zircon U–Pb dating yielded crystallization ages of the Kezilekezitage, Keziertuo, and Halajun II intrusions of 275.1 ± 3.1 Ma (MSWD = 1.14), 274.8 ± 1.8 (MSWD = 0.46) and 275.6 ± 0.7 (MSWD = 1.04), respectively. The whole-rock geochemistry of the four intrusions is characterized by REE and HFSE enrichment, Ba, Sr, P, Ti, and Eu depletion, εNd (t) values of – 1.2 to +0.3, two-stage Nd model ages (T<sub>2DM</sub>) of 1.14–1.02 Ga, and an A1-type granite affinity. Whole-rock zircon geothermometry indicates a high formation temperature of 721–924°C. It is concluded that these A-type granites were generated by partial melting of Neoproterozoic OIB-like rocks, coupled with extensive fractional crystallization and minor crustal contamination. The production of the A-type granites at <i>ca</i>. 275 Ma represented the termination and greatest degree of lithospheric thinning during large igneous province formation.
DOI: 10.6084/m9.figshare.20023126.v1
title: Additional file 4 of Comparative proteomic analysis on chloroplast proteins provides new insights into the effects of low temperature in sugar beet

description: Additional file 4: Figure S2. a The number of proteins encoded from chloroplast DNA in this study. Ratio of proteins encoded by chloroplast DNA with those encoded by nuclear DNA. b The function of proteins encoding from chloroplast DNA. c Ratio of chloroplast DNA and nuclear DNA that encode differentially expressed proteins. d The function of different expression proteins encoding from chloroplast DNA.
DOI: 10.6084/m9.figshare.24218469
title: A Network Meta-Analysis of Success Rates following Low Dosage Anti-VEGF for Retinopathy of Prematurity

description: To search the low dosage of anti-VEGF best for primary therapies on retinopathy of prematurity (ROP) in terms of success rate. We searched Medline(Pubmed), Embase, and Cochrane Central Register of Controlled Trials (CENTRAL) databases only for randomized controlled trials that had been reported as of March 3, 2023. We included studies that used bevacizumab, aflibercept and conbercept for ROP with comparable cohorts and treatment criteria. This study was performed according the pre-specified protocol registered with PROSPERO (CRD42021270077) and the Preferred Reporting Items for Systematic Reviews and Meta-Analysis checklist. Those with animal and cell experiments, non-randomized case-control, or single case report were excluded. Frequentist network meta-analyses determined the surface under the cumulative ranking (SUCRA) of the success rate of each dose range group and compared pairs of treatments <i>via</i> STATA 15. Since non-RCT research were excluded, aflflibercept and conbercept studies were excluded. Therefore, only 6 bevacizumab studies were included in final meta-analysis: Inconsistency was not detected in this study <i>via</i> global inconsistent model test, loop inconsistency and local inconsistent model test (<i>p</i> &gt; 0.05). In addition, a consistent model test has been passed in this study (<i>p</i> &gt; 0.05). Little bias was detected <i>via</i> funnel plot. Since bevacizumab adult standard dose of single-injection is 1.25 mg, the concentration groups were converted according to the proportion of adult standard dose, such as 1/2, [1/5, 1/6.25], [1/10, 1/12.5], [1/19.8, 1/78.1], [1/156.3, 1/625]. The SUCRA of [1/10, 1/12.5] dose group were the best of largest probability to achieve success. However, [1/156.3, 1/625] dose group was the worst dose to achieve success in the five dose groups. The success rate ranking of league chart in this study is that [1/10, 1/12.5] &gt; [1/5, 1/6.25] &gt; 1/2 ≈ [1/19.8, 1/78.1] &gt; [1/156.3, 1/625]. [1/10, 1/12.5] were the best dosage ranges to achieve maximal medicine success. [1/156.3, 1/625] was the worst ineffective in the five dose ranges.
DOI: 10.25582/data.2023-01.2720873/2291727
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.24218469.v1
title: A Network Meta-Analysis of Success Rates following Low Dosage Anti-VEGF for Retinopathy of Prematurity

description: To search the low dosage of anti-VEGF best for primary therapies on retinopathy of prematurity (ROP) in terms of success rate. We searched Medline(Pubmed), Embase, and Cochrane Central Register of Controlled Trials (CENTRAL) databases only for randomized controlled trials that had been reported as of March 3, 2023. We included studies that used bevacizumab, aflibercept and conbercept for ROP with comparable cohorts and treatment criteria. This study was performed according the pre-specified protocol registered with PROSPERO (CRD42021270077) and the Preferred Reporting Items for Systematic Reviews and Meta-Analysis checklist. Those with animal and cell experiments, non-randomized case-control, or single case report were excluded. Frequentist network meta-analyses determined the surface under the cumulative ranking (SUCRA) of the success rate of each dose range group and compared pairs of treatments <i>via</i> STATA 15. Since non-RCT research were excluded, aflflibercept and conbercept studies were excluded. Therefore, only 6 bevacizumab studies were included in final meta-analysis: Inconsistency was not detected in this study <i>via</i> global inconsistent model test, loop inconsistency and local inconsistent model test (<i>p</i> &gt; 0.05). In addition, a consistent model test has been passed in this study (<i>p</i> &gt; 0.05). Little bias was detected <i>via</i> funnel plot. Since bevacizumab adult standard dose of single-injection is 1.25 mg, the concentration groups were converted according to the proportion of adult standard dose, such as 1/2, [1/5, 1/6.25], [1/10, 1/12.5], [1/19.8, 1/78.1], [1/156.3, 1/625]. The SUCRA of [1/10, 1/12.5] dose group were the best of largest probability to achieve success. However, [1/156.3, 1/625] dose group was the worst dose to achieve success in the five dose groups. The success rate ranking of league chart in this study is that [1/10, 1/12.5] &gt; [1/5, 1/6.25] &gt; 1/2 ≈ [1/19.8, 1/78.1] &gt; [1/156.3, 1/625]. [1/10, 1/12.5] were the best dosage ranges to achieve maximal medicine success. [1/156.3, 1/625] was the worst ineffective in the five dose ranges.
DOI: 10.25549/usctheses-ouc11293382
title: Microsoft Word - Thesis_Jialuo_v6_wm.docx
DOI: 10.25582/data.2023-02.2731769/2291728
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.6916526
title: MOESM8 of An efficient CRISPR vector toolbox for engineering large deletions in Arabidopsis thaliana

description: Additional file 8: Table S4. Frequency of At3g04220 gene deletions in natural accessions.
DOI: 10.6084/m9.figshare.20023123
title: Additional file 3 of Comparative proteomic analysis on chloroplast proteins provides new insights into the effects of low temperature in sugar beet

description: Additional file 3: Figure S1. Protein quality control analysis of different samples. a The correlation between the control and 24 h treatment. b Examination of peptide intensity distribution in different samples.
DOI: 10.6084/m9.figshare.6916430
title: Additional file 2: of OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice

description: Table S1. Identification of OsRACK1A interacting proteins. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.6916526.v1
title: MOESM8 of An efficient CRISPR vector toolbox for engineering large deletions in Arabidopsis thaliana

description: Additional file 8: Table S4. Frequency of At3g04220 gene deletions in natural accessions.
DOI: 10.25582/data.2023-01.2714550/2291729
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.6916430.v1
title: Additional file 2: of OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice

description: Table S1. Identification of OsRACK1A interacting proteins. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.6916460.v1
title: MOESM4 of An efficient CRISPR vector toolbox for engineering large deletions in Arabidopsis thaliana

description: Additional file 4: Table S2. sgRNA target sequences and oligonucleotides for genotyping.
DOI: 10.6084/m9.figshare.6916472
title: MOESM5 of An efficient CRISPR vector toolbox for engineering large deletions in Arabidopsis thaliana

description: Additional file 5: Table S3. Overview of vectors.
DOI: 10.25582/data.2023-01.2718425/2291730
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.6916424
title: MOESM2 of An efficient CRISPR vector toolbox for engineering large deletions in Arabidopsis thaliana

description: Additional file 2: Table S1. Frequency of deletion and inheritance for 53 targeted genes in Col-0 with UBQ10 promoter driving pcoCas9.
DOI: 10.6084/m9.figshare.6916472.v1
title: MOESM5 of An efficient CRISPR vector toolbox for engineering large deletions in Arabidopsis thaliana

description: Additional file 5: Table S3. Overview of vectors.
DOI: 10.6084/m9.figshare.6916502
title: MOESM1 of Residual tissue repositories as a resource for population-based cancer proteomic studies

description: Additional file 1: Table S1. Â TMT labeling scheme for expression proteomics.
DOI: 10.6084/m9.figshare.6916592.v1
title: MOESM7 of Residual tissue repositories as a resource for population-based cancer proteomic studies

description: Additional file 7: Table S6. Significantly affected GO terms.
DOI: 10.25549/usctheses-ouc11293407
title: Microsoft Word - thesis2.docx
DOI: 10.6084/m9.figshare.6916424.v1
title: MOESM2 of An efficient CRISPR vector toolbox for engineering large deletions in Arabidopsis thaliana

description: Additional file 2: Table S1. Frequency of deletion and inheritance for 53 targeted genes in Col-0 with UBQ10 promoter driving pcoCas9.
DOI: 10.6084/m9.figshare.6916502.v1
title: MOESM1 of Residual tissue repositories as a resource for population-based cancer proteomic studies

description: Additional file 1: Table S1. Â TMT labeling scheme for expression proteomics.
DOI: 10.25582/data.2023-02.2731719/2291731
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.6916460
title: MOESM4 of An efficient CRISPR vector toolbox for engineering large deletions in Arabidopsis thaliana

description: Additional file 4: Table S2. sgRNA target sequences and oligonucleotides for genotyping.
DOI: 10.6084/m9.figshare.6916520
title: MOESM2 of Residual tissue repositories as a resource for population-based cancer proteomic studies

description: Additional file 2: Table S2. Â TMT labeling scheme for phosphoproteomics.
DOI: 10.6084/m9.figshare.6916550
title: MOESM4 of Residual tissue repositories as a resource for population-based cancer proteomic studies

description: Additional file 4: Table S4. Â Table of specimen age and RTR.
DOI: 10.25582/data.2023-01.2711690/2291732
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.6916520.v1
title: MOESM2 of Residual tissue repositories as a resource for population-based cancer proteomic studies

description: Additional file 2: Table S2. Â TMT labeling scheme for phosphoproteomics.
DOI: 10.6084/m9.figshare.6916538
title: MOESM3 of Residual tissue repositories as a resource for population-based cancer proteomic studies

description: Additional file 3: Table S3. Â Weighted spectral count table used for GSEA.
DOI: 10.6084/m9.figshare.6916538.v1
title: MOESM3 of Residual tissue repositories as a resource for population-based cancer proteomic studies

description: Additional file 3: Table S3. Â Weighted spectral count table used for GSEA.
DOI: 10.6084/m9.figshare.6916673
title: Additional file 6: of Tricho-rhino-phalangeal syndrome 1 protein functions as a scaffold required for ubiquitin-specific protease 4-directed histone deacetylase 2 de-ubiquitination and tumor growth

description: Table S3. A, B Differential expressed genes upon silencing of TRPS1 or HDAC2 in MCF7 by RNA-sequencing. (XLSX 2609 kb)
DOI: 10.25582/data.2023-01.2717365/2291733
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.6916550.v1
title: MOESM4 of Residual tissue repositories as a resource for population-based cancer proteomic studies

description: Additional file 4: Table S4. Â Table of specimen age and RTR.
DOI: 10.6084/m9.figshare.6916568
title: MOESM5 of Residual tissue repositories as a resource for population-based cancer proteomic studies

description: Additional file 5: Table S5. Â Identified peptides, proteins, and phosphopeptides.
DOI: 10.6084/m9.figshare.6916568.v1
title: MOESM5 of Residual tissue repositories as a resource for population-based cancer proteomic studies

description: Additional file 5: Table S5. Â Identified peptides, proteins, and phosphopeptides.
DOI: 10.5281/zenodo.10637707
title: Connectivity modelling identifies sources and sinks of coral recruitment within reef clusters

description: This study uses biophysical modelling to estimate coral larval connectivity estimates within the Moore Reef cluster, northern Great Barrier Reef, for the annual spawning events of Acropora corals in 2015, 2016 and 2017.

Moore_2015_simple.nc, Moore_2016_simple.nc and Moore_2017_simple.nc contain the hydrodynamic data for the Moore Reef cluster.

surface_2015.nc, surface_2016.nc and surface_2017.nc contain surface velocities for the Moore Reef cluster.

tidal_data_2015.nc, tidal_data_2016.nc, tidal_data_2017_1.nc and tidal_data_2017_2.nc contain mean tidal velocities during larval dispersion.

The transfer probability matrix data contain the connectivity matrices for the days and years that were considered.
DOI: 10.6084/m9.figshare.6916748.v1
title: Additional file 6: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

description: Figure S5. SCFA concentrations in colonic content of (XLSX 43 kb)
DOI: 10.6084/m9.figshare.6916772.v1
title: Additional file 7: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

description: Table S2. List of microbial genes differentially expressed in the cecum of mice fed high-fat diets supplemented with primary bile acids and with either palm oil (PHB) or lard (LHB) as fat source. Genes included in this table are significantly (q-value &lt; 0.05) and substantially (&gt;2.5-fold) overexpressed in one condition as compared to the other.Gene annotation (KEGG) refers to the Kyoto Encyclopedia of Genes and Genomes database annotation. (XLSX 34 kb)
DOI: 10.25582/data.2023-01.2718330/2291734
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.6916748
title: Additional file 6: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

description: Figure S5. SCFA concentrations in colonic content of (XLSX 43 kb)
DOI: 10.6084/m9.figshare.6916673.v1
title: Additional file 6: of Tricho-rhino-phalangeal syndrome 1 protein functions as a scaffold required for ubiquitin-specific protease 4-directed histone deacetylase 2 de-ubiquitination and tumor growth

description: Table S3. A, B Differential expressed genes upon silencing of TRPS1 or HDAC2 in MCF7 by RNA-sequencing. (XLSX 2609 kb)
DOI: 10.25582/data.2023-01.2718700/2291735
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.7440968.v1
title: MOESM1 of Identification of phosphorylation proteins in response to water deficit during wheat flag leaf and grain development

description: Additional file 1: Table S1. Agronomic trait changes of Zhongmai 175 under drought stress. Table S2A. DAPs from flag leaf samples identified by MALDI-TOF/TOF-MS. Table S2B. Identified DAP spots from 2-DE maps of flag leaves in Zhongmai 175 under drought stress treatment in combination with MALDI-TOF/TOF-MS data. Table S3A. DAPs from developing grain samples identified by MALDI-TOF/TOF-MS. Table S3B. Identified DAP spots from Zhongmai 175 developing grain under drought stress treatment from 2-DE maps in combination with MALDI-TOF/TOF-MS data. Table S4A. Phorphorylated site prediction of the identified phosphoproteins in flag leaf by NetPhos 3.1 Server. Table S4B. Phorphorylated site prediction of the identified phosphoproteins in developing grains by NetPhos 3.1 Server.
DOI: 10.6084/m9.figshare.6916772
title: Additional file 7: of The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

description: Table S2. List of microbial genes differentially expressed in the cecum of mice fed high-fat diets supplemented with primary bile acids and with either palm oil (PHB) or lard (LHB) as fat source. Genes included in this table are significantly (q-value &lt; 0.05) and substantially (&gt;2.5-fold) overexpressed in one condition as compared to the other.Gene annotation (KEGG) refers to the Kyoto Encyclopedia of Genes and Genomes database annotation. (XLSX 34 kb)
DOI: 10.25582/data.2023-02.2732190/2291736
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.12159570
title: New anatomical information on the bohaiornithid <i>Longusunguis</i> and the presence of a plesiomorphic diapsid skull in Enantiornithes

description: Bohaiornithidae is currently the most diverse recognized family of Early Cretaceous enantiornithines, with unique morphology of the rostrum and pedal digits. Here we describe a second specimen of the bohaiornithid <i>Longusunguis kurochkini</i> from the Jiufotang Formation. This specimen provides new anatomical information regarding this taxon, in particular clarifying uncertain aspects of enantiornithine cranial morphology. The rarely preserved postorbital is completely preserved on both sides of the skull, confirming the presence of a complete postorbital bar in some enantiornithines. This suggests that the plesiomorphic diapsid skull was retained by at least some basal enantiornithines and the infratemporal fenestra in Ornithothoraces may have been lost independently multiple times, providing a better understanding of cranial evolution from non-avian dinosaurs to modern birds.
DOI: 10.6084/m9.figshare.12159570.v1
title: New anatomical information on the bohaiornithid <i>Longusunguis</i> and the presence of a plesiomorphic diapsid skull in Enantiornithes

description: Bohaiornithidae is currently the most diverse recognized family of Early Cretaceous enantiornithines, with unique morphology of the rostrum and pedal digits. Here we describe a second specimen of the bohaiornithid <i>Longusunguis kurochkini</i> from the Jiufotang Formation. This specimen provides new anatomical information regarding this taxon, in particular clarifying uncertain aspects of enantiornithine cranial morphology. The rarely preserved postorbital is completely preserved on both sides of the skull, confirming the presence of a complete postorbital bar in some enantiornithines. This suggests that the plesiomorphic diapsid skull was retained by at least some basal enantiornithines and the infratemporal fenestra in Ornithothoraces may have been lost independently multiple times, providing a better understanding of cranial evolution from non-avian dinosaurs to modern birds.
DOI: 10.25582/data.2023-01.2721774/2291737
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.24218624
title: The efficacy and toxicity of mirvetuximab soravtansine, a novel antibody-drug conjugate, in the treatment of advanced or recurrent ovarian cancer: a meta-analysis

description: This meta-analysis aims to systematically analyze the efficacy and toxicity of mirvetuximab soravtansine (MIRV) as second-line and above treatment for advanced or recurrent ovarian cancer. Candidate studies were identified in PubMed, Embase, Cochrane Library, CNKI, and Wanfang databases up to 1 May 2023. Objective response rate (ORR), progression-free survival (PFS), the incidence of adverse events (AEs), and incidence of grade ≥ 3 AEs were extracted and calculated by meta-analysis of merging ratios or mean to describe the efficacy and toxicity of MIRV. Seven eligible prospective studies were included in this meta-analysis, including 605 patients with advanced ovarian cancer who received second-line or higher therapy. ORR of MIRV was 34.2% (95% confidence interval [CI] 25.0–43.5), and PFS was 5.82 months (95%CI 4.47–7.18). The overall incidence of AEs was 87.4% (95%CI 52.9–100.0) and the incidence of grade ≥ 3 AEs was 27.1% (95%CI 18.9–36.1). The most common AEs were vision blurring, nausea, and diarrhea, with incidence of 46.7% (39.6–53.8), 41.8% (34.0–49.9), and 41.3% (30.4–52.5), respectively. MIRV has definite efficacy and good safety as a novel choice for second-line and above treatment of advanced or recurrent FRα positive ovarian cancer. This may have promising application in patients with platinum-resistant diseases. CRD42023428599