cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15144833
title: TABLE 1. Morphological comparison between Timonius wrayi and T in Two new species of Timonius (Rubiaceae: Guettardeae) from the Malay Peninsula

description: TABLE 1. Morphological comparison between Timonius wrayi and T. megalocalyx.
Timonius wrayiTimonius megalocalyxYoung twigsglabroussparsely to densely hairyPetiolessubglabrous to glabroussparsely to densely hairyLeaflower lamina surface glabrouslower lamina surface with sparse short hairsStipulesouter surface sparsely hairy to subglabrousouter surface completely covered by hairsFruit calyxcalyx lobes shorter (2–3 mm long) and erectcalyx lobes long (5–8 mm long) and reflexed
description: Published as part of Hoo, Pui Kiat, Sugumaran, Manickam & Wong, Khoon Meng, 2023, Two new species of Timonius (Rubiaceae: Guettardeae) from the Malay Peninsula, pp. 173 in Phytotaxa 599 (3) on page 173, DOI: 10.11646/phytotaxa.599.3.4, http://zenodo.org/record/8012553
DOI: 10.5281/zenodo.15144834
title: TABLE 1. Morphological comparison between Timonius wrayi and T in Two new species of Timonius (Rubiaceae: Guettardeae) from the Malay Peninsula

description: TABLE 1. Morphological comparison between Timonius wrayi and T. megalocalyx.
Timonius wrayiTimonius megalocalyxYoung twigsglabroussparsely to densely hairyPetiolessubglabrous to glabroussparsely to densely hairyLeaflower lamina surface glabrouslower lamina surface with sparse short hairsStipulesouter surface sparsely hairy to subglabrousouter surface completely covered by hairsFruit calyxcalyx lobes shorter (2–3 mm long) and erectcalyx lobes long (5–8 mm long) and reflexed
description: Published as part of Hoo, Pui Kiat, Sugumaran, Manickam & Wong, Khoon Meng, 2023, Two new species of Timonius (Rubiaceae: Guettardeae) from the Malay Peninsula, pp. 173 in Phytotaxa 599 (3) on page 173, DOI: 10.11646/phytotaxa.599.3.4, http://zenodo.org/record/8012553
DOI: 10.15468/dl.kra6ga
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Didymopanax malmei Harms"
 ]
}

 The dataset includes 113 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152420-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oszqu9
title: Occurrence Download

description: A dataset containing 319240 species occurrences available in GBIF matching the query:
{
 "Elevation" : [
 "5500.0-9999.0m"
 ]
}

 The dataset includes 319240 records from 318 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007766-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m25z3h
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cyanolimnas cerverai Barbour & J.L.Peters, 1927"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057260-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ryqk5v
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Coptis japonica (Thunb.) Makino",
 "Year 2000-2021"
 ]
}

 The dataset includes 156 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258497-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ipixxw
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Plutarchia guascensis (Cuatrec.) A.C.Sm."
 ]
}

 The dataset includes 84 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007770-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jqffye
title: Occurrence Download

description: A dataset containing 93580 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rattus norvegicus (Berkenhout, 1769)"
 ]
}

 The dataset includes 93580 records from 506 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262292-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwq9dt
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia sinofloribunda Dorr"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057363-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5tz7d6
title: Occurrence Download

description: A dataset listing the 11 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia longifolia (Andrews) Willd."
 ]
}

 The dataset's 11 records were derived from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007764-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ty2a4p
title: Occurrence Download

description: A dataset containing 18714 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cydonia oblonga Mill."
 ]
}

 The dataset includes 18714 records from 321 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228113-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhtn52
title: Occurrence Download

description: A dataset containing 706 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Anthus sokokensis Someren, 1921"
 ]
}

 The dataset includes 706 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057342-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvs66y
title: Occurrence Download

description: A dataset containing 1774 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1989-2019",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 1774 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007769-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erjcr7
title: Occurrence Download

description: A dataset listing the 12 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rastrelliger kanagurta (Cuvier, 1816)"
 ]
}

 The dataset's 12 records were derived from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258513-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tb7fmn
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blepharis trispina Napper"
 ]
}

 The dataset includes 21 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057361-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lqc5z6
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nesomys Peters, 1870"
 ]
}

 The dataset includes 176 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007762-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ry92hm
title: Occurrence Download

description: A dataset containing 37012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation, Specimen)",
 "Country is Guinea-Bissau",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37012 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033046-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/x3eyng
title: A11_19261.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/6f1c6c8b-7418-46c6-a018-58eece7a0b5b'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/6f1c6c8b-7418-46c6-a018-58eece7a0b5b
DOI: 10.7910/dvn/vlkeru
title: A11_19262.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/80590644-1839-4786-bb90-d238b366ee3a'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/80590644-1839-4786-bb90-d238b366ee3a
DOI: 10.7910/dvn/gokmkx
title: A11_19264.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/92969e68-306e-41d4-b5a5-1630fee556df'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/92969e68-306e-41d4-b5a5-1630fee556df
DOI: 10.7910/dvn/naww5p
title: A11_19265.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/57c0742b-2ebd-4df7-9468-2488dad37606'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/57c0742b-2ebd-4df7-9468-2488dad37606
DOI: 10.7910/dvn/tplo8b
title: A11_19266.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/dad4f54c-3afa-4df7-8bfe-bda0893d919d'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/dad4f54c-3afa-4df7-8bfe-bda0893d919d
DOI: 10.7910/dvn/9n9etp
title: A11_19269.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/be8c9847-e48c-4643-b402-818c0d9a936b'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/be8c9847-e48c-4643-b402-818c0d9a936b
DOI: 10.7910/dvn/snldzd
title: A11_19272.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/3b00b654-d809-4776-87b0-30c2223a26b4'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/3b00b654-d809-4776-87b0-30c2223a26b4
DOI: 10.7910/dvn/9zl44l
title: A11_19273.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/77a591e7-6f68-44e9-9515-6a93af62ee71'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/77a591e7-6f68-44e9-9515-6a93af62ee71
DOI: 10.7910/dvn/ufocwa
title: A11_19275.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/14e7ff01-83da-4cb9-bd9a-d68b6786ce43'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/14e7ff01-83da-4cb9-bd9a-d68b6786ce43
DOI: 10.15468/dl.w33sh9
title: Occurrence Download

description: A dataset containing 2136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Mustela lutreola (Linnaeus, 1761)"
 ]
}

 The dataset includes 2136 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032036-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/onfvgv
title: A11_19276.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/f0b030d3-7ef3-4403-a4ce-118eb610b9c6'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/f0b030d3-7ef3-4403-a4ce-118eb610b9c6
DOI: 10.15468/dl.sptgg3
title: Occurrence Download

description: A dataset containing 1875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.82571 36.74172,-5.76148 38.24248,-7.76453 38.28069,-7.78907 36.77792,-5.82571 36.74172))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dryobates minor (Linnaeus, 1758)"
 ]
}

 The dataset includes 1875 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032038-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/yq8esh
title: A11_19279.JPG

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/ab63a01f-288e-41a3-8219-4562b2f69fb7'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/ab63a01f-288e-41a3-8219-4562b2f69fb7
DOI: 10.6084/m9.figshare.27283269
title: Freshwater worms after invasion by <i>Pomacea canaliculata</i>

description: <pre>Data on manuscripts "Effect of <i>Pomacea canaliculata</i> on <i>Limnodrilus hoffmeisteri</i>: behavior, oxidative stress, and microbiota alterations". This manuscript is being considered for publication in Ecology and Evolution.</pre>
DOI: 10.7910/dvn/8cnxl2
title: A11_19280.JPG

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/7de6f92f-9696-4770-83c1-184233e9ff43'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/7de6f92f-9696-4770-83c1-184233e9ff43
DOI: 10.6084/m9.figshare.25754710
title: The mammalian actin elongation factor ENAH/MENA contributes to autophagosome formation via its actin regulatory function

description: Macroautophagy/autophagy is a catabolic process crucial for degrading cytosolic components and damaged organelles to maintain cellular homeostasis, enabling cells to survive in extreme extracellular environments. ENAH/MENA, a member of the Ena/VASP protein family, functions as a highly efficient actin elongation factor. In this study, our objective was to explore the role of ENAH in the autophagy process. Initially, we demonstrated that depleting ENAH in cancer cells inhibits autophagosome formation. Subsequently, we observed ENAH’s colocalization with MAP1LC3/LC3 during tumor cell starvation, dependent on actin cytoskeleton polymerization and the interaction between ENAH and BECN1 (beclin 1). Additionally, mammalian ATG9A formed a ring-like structure around ENAH-LC3 puncta during starvation, relying on actin cytoskeleton polymerization. Furthermore, ENAH’s EVH1 and EVH2 domains were found to be indispensable for its colocalization with LC3 and BECN1, while the PRD domain played a crucial role in the formation of the ATG9A ring. Finally, our study revealed ENAH-led actin comet tails in autophagosome trafficking. In conclusion, our findings provide initial insights into the regulatory role of the mammalian actin elongation factor ENAH in autophagy. <b>Abbreviations</b>: 3-MA 3-methyladenine; ABPs actin-binding proteins; ATG autophagy related; ATG9A autophagy related 9A; Baf A1 bafilomycin A<sub>1</sub>; CM complete medium; CytERM endoplasmic reticulum signal-anchor membrane protein; Cyto D cytochalasin D; EBSS Earl’s balanced salt solution; ENAH/MENA ENAH actin regulator; EVH1 Ena/VASP homology 1 domain; EVH2 Ena/VASP homology 2 domain; GAPDH glyceraldehyde-3-phosphate dehydrogenase; Lat B latrunculin B; LC3-I unlipidated form of LC3; LC3-II phosphatidylethanolamine-conjugated form of LC3; MAP1LC3/LC3 microtubule associated protein 1 light chain 3; mEGFP monomeric enhanced green fluorescent protein; mTagBFP2 monomeric Tag blue fluorescent protein 2; OSER organized smooth endoplasmic reticulum; PRD proline-rich domain; PtdIns3K class III phosphatidylinositol 3-kinase; WM wortmannin.
DOI: 10.6084/m9.figshare.25754710.v1
title: The mammalian actin elongation factor ENAH/MENA contributes to autophagosome formation via its actin regulatory function

description: Macroautophagy/autophagy is a catabolic process crucial for degrading cytosolic components and damaged organelles to maintain cellular homeostasis, enabling cells to survive in extreme extracellular environments. ENAH/MENA, a member of the Ena/VASP protein family, functions as a highly efficient actin elongation factor. In this study, our objective was to explore the role of ENAH in the autophagy process. Initially, we demonstrated that depleting ENAH in cancer cells inhibits autophagosome formation. Subsequently, we observed ENAH’s colocalization with MAP1LC3/LC3 during tumor cell starvation, dependent on actin cytoskeleton polymerization and the interaction between ENAH and BECN1 (beclin 1). Additionally, mammalian ATG9A formed a ring-like structure around ENAH-LC3 puncta during starvation, relying on actin cytoskeleton polymerization. Furthermore, ENAH’s EVH1 and EVH2 domains were found to be indispensable for its colocalization with LC3 and BECN1, while the PRD domain played a crucial role in the formation of the ATG9A ring. Finally, our study revealed ENAH-led actin comet tails in autophagosome trafficking. In conclusion, our findings provide initial insights into the regulatory role of the mammalian actin elongation factor ENAH in autophagy. <b>Abbreviations</b>: 3-MA 3-methyladenine; ABPs actin-binding proteins; ATG autophagy related; ATG9A autophagy related 9A; Baf A1 bafilomycin A<sub>1</sub>; CM complete medium; CytERM endoplasmic reticulum signal-anchor membrane protein; Cyto D cytochalasin D; EBSS Earl’s balanced salt solution; ENAH/MENA ENAH actin regulator; EVH1 Ena/VASP homology 1 domain; EVH2 Ena/VASP homology 2 domain; GAPDH glyceraldehyde-3-phosphate dehydrogenase; Lat B latrunculin B; LC3-I unlipidated form of LC3; LC3-II phosphatidylethanolamine-conjugated form of LC3; MAP1LC3/LC3 microtubule associated protein 1 light chain 3; mEGFP monomeric enhanced green fluorescent protein; mTagBFP2 monomeric Tag blue fluorescent protein 2; OSER organized smooth endoplasmic reticulum; PRD proline-rich domain; PtdIns3K class III phosphatidylinositol 3-kinase; WM wortmannin.
DOI: 10.15468/dl.wxwe9a
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nucifraga hemispila Vigors, 1831"
 ]
}

 The dataset includes 103 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032040-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25467917
title: Design and validation of a reporter mouse to study the dynamic regulation of TFEB and TFE3 activity through <i>in vivo</i> imaging techniques

description: TFEB and TFE3 belong to the MiT/TFE family of transcription factors that bind identical DNA responsive elements in the regulatory regions of target genes. They are involved in regulating lysosomal biogenesis, function, exocytosis, autophagy, and lipid catabolism. Precise control of TFEB and TFE3 activity is crucial for processes such as senescence, stress response, energy metabolism, and cellular catabolism. Dysregulation of these factors is implicated in various diseases, thus researchers have explored pharmacological approaches to modulate MiT/TFE activity, considering these transcription factors as potential therapeutic targets. However, the physiological complexity of their functions and the lack of suitable <i>in vivo</i> tools have limited the development of selective MiT/TFE modulating agents. Here, we have created a reporter-based biosensor, named CLEARoptimized, facilitating the pharmacological profiling of TFEB- and TFE3-mediated transcription. This innovative tool enables the measurement of TFEB and TFE3 activity in living cells and mice through imaging and biochemical techniques. CLEARoptimized consists of a promoter with six coordinated lysosomal expression and regulation motifs identified through an in-depth bioinformatic analysis of the promoters of 128 TFEB-target genes. The biosensor drives the expression of luciferase and tdTomato reporter genes, allowing the quantification of TFEB and TFE3 activity in cells and in animals through optical imaging and biochemical assays. The biosensor’s validity was confirmed by modulating MiT/TFE activity in both cell culture and reporter mice using physiological and pharmacological stimuli. Overall, this study introduces an innovative tool for studying autophagy and lysosomal pathway modulation at various biological levels, from individual cells to the entire organism. <b>Abbreviations:</b> CLEAR: coordinated lysosomal expression and regulation; MAR: matrix attachment regions; MiT: microphthalmia-associated transcription factor; ROI: region of interest; TBS: tris-buffered saline; TF: transcription factor; TFE3: transcription factor binding to IGHM enhancer 3; TFEB: transcription factor EB; TH: tyrosine hydroxylase; TK: thymidine kinase; TSS: transcription start site.