cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25186484.v1
title: Original image data and associated analysis pipelines for the manuscript entitled "The global RNA-RNA interactome of Klebsiella pneumoniae unveils a small RNA regulator of cell division<b>"</b>

description: This folder contains files that are related to the image analysis:<br>- Results.zip contains all the results- Code_And_Data.zip contains the input data and JIPipe- Fiji.app-JIPipe-1.80.0.zip contains the JIPipe installation (for Windows only) that was used to calculate the results (more information can be found in the packaged README.txt)- project.jip contains the JIPipe 1.80.0 code that was used for generating the results. This file is identical to the one in Code_And_Data.7z<br>- Methods_Supplements_Image_Analysis.pdf contains explanations about the pipeline
DOI: 10.17630/266d9265-f8e2-431b-8a98-d8e596d150a7
title: Data underpinning: Observation of Anomalous Meissner Screening in Cu=Nb and Cu=Nb=Co Thin Films

description: R(T) and Hc2(T) transport data; LEM stopping profiles and raw data sets (in .root and .nemu format)
DOI: 10.17630/ce277b52-6fc0-442b-975b-1d80db5d8bb5
title: Design of a highly active Pd Catalyst with P,N Hemilabile Ligands for alkoxycarbonylation of alkynes and allenes: a density functional theory study (dataset)

description: Computational data for paper "Design of a highly active Pd Catalyst with P,N Hemilabile Ligands for alkoxycarbonylation of alkynes and allenes: a density functional theory study"
DOI: 10.6084/m9.figshare.24942420
title: TEM and FF Cryo-SEM images of Arabidopsis plant

description: Ultrastructural and supramolecular rearrangements that occur during the dark-to-light transition in plants.
DOI: 10.6084/m9.figshare.20013072
title: Additional file 5 of Identification of novel non-HFE mutations in Chinese patients with hereditary hemochromatosis

description: Additional file 5. Table S4. Missense variants in genes associated with iron metabolism pathway identified in patients with primary iron overload by NGWES.
DOI: 10.6084/m9.figshare.20013078.v1
title: Additional file 6 of Identification of novel non-HFE mutations in Chinese patients with hereditary hemochromatosis

description: Additional file 6. Unknown potential iron metabolism–related genes identified with mutations in at least two of the nine cases by NGWES.
DOI: 10.6084/m9.figshare.20013078
title: Additional file 6 of Identification of novel non-HFE mutations in Chinese patients with hereditary hemochromatosis

description: Additional file 6. Unknown potential iron metabolism–related genes identified with mutations in at least two of the nine cases by NGWES.
DOI: 10.5281/zenodo.10635539
title: SWECO25: Topographic (topo)

description: The topographic category contains the "alti3d" dataset.

The alti3D dataset (topographic category) describes the topography of Switzerland. After resampling the “SwissALTI3D” source data (swisstopo, 2016) to the SWECO25 grid with 4 resampling schemes (mean, median, minimum, and maximum value), we generated individual layers for four variables (elevation, aspect, hillshade, and slope). For each variable and resampling scheme, we computed 13 focal statistics layers by applying a cell-level function calculating the mean value in a circular moving window of 13 radii ranging from 25m to 5km. This dataset includes a total of 224 layers. Final values were rounded and multiplied by 100.

The detailed list of layers available is provided in SWECO25_datalayers_details_topo.csv and includes information on the category, dataset, variable name (long), variable name (short), period, sub-period, start year, end year, attribute, radii, unit, and path.

References:

Swiss Federal Office of Topography [swisstopo]. The high precision digital elevation model of Switzerland swissALTI3D (2m). (Wabern, Switzerland, 2016).

Külling, N., Adde, A., Fopp, F., Schweiger, A. K., Broennimann, O., Rey, P.-L., Giuliani, G., Goicolea, T., Petitpierre, B., Zimmermann, N. E., Pellissier, L., Altermatt, F., Lehmann, A., & Guisan, A. (2024). SWECO25: A cross-thematic raster database for ecological research in Switzerland. Scientific Data, 11(1), Article 1. https://doi.org/10.1038/s41597-023-02899-1

V2: metadata update

 
description: We gratefully acknowledge financial support through the Action Plan of the Swiss Biodiversity Strategy by the Federal Office for the Environment (FOEN) for financing the ValPar.CH and SwissCatchment projects. All the institutions and contributors who made the input data freely available are gratefully acknowledged.
DOI: 10.5281/zenodo.7973959
title: SWECO25: Topographic (topo)

description: The topographic category contains the "alti3d" dataset.

The alti3D dataset (topographic category) describes the topography of Switzerland. After resampling the “SwissALTI3D” source data (swisstopo, 2016) to the SWECO25 grid with 4 resampling schemes (mean, median, minimum, and maximum value), we generated individual layers for four variables (elevation, aspect, hillshade, and slope). For each variable and resampling scheme, we computed 13 focal statistics layers by applying a cell-level function calculating the mean value in a circular moving window of 13 radii ranging from 25m to 5km. This dataset includes a total of 224 layers. Final values were rounded and multiplied by 100.

The detailed list of layers available is provided in SWECO25_datalayers_details_topo.csv and includes information on the category, dataset, variable name (long), variable name (short), period, sub-period, start year, end year, attribute, radii, unit, and path.

References:

Swiss Federal Office of Topography [swisstopo]. The high precision digital elevation model of Switzerland swissALTI3D (2m). (Wabern, Switzerland, 2016).

Külling, N., Adde, A., Fopp, F., Schweiger, A. K., Broennimann, O., Rey, P.-L., Giuliani, G., Goicolea, T., Petitpierre, B., Zimmermann, N. E., Pellissier, L., Altermatt, F., Lehmann, A., & Guisan, A. (2024). SWECO25: A cross-thematic raster database for ecological research in Switzerland. Scientific Data, 11(1), Article 1. https://doi.org/10.1038/s41597-023-02899-1

V2: metadata update

 
description: We gratefully acknowledge financial support through the Action Plan of the Swiss Biodiversity Strategy by the Federal Office for the Environment (FOEN) for financing the ValPar.CH and SwissCatchment projects. All the institutions and contributors who made the input data freely available are gratefully acknowledged.
DOI: 10.5281/zenodo.7973960
title: SWECO25: Topographic (topo)

description: The topographic category (SWECO25 v1.0.0) contains the "alti3d" dataset.

The alti3D dataset (topographic category) describes the topography of Switzerland. After resampling the “SwissALTI3D” source data (swisstopo, 2022) to the SWECO25 grid with 4 resampling schemes (mean, median, minimum, and maximum value), we generated individual layers for four variables (elevation, aspect, hillshade, and slope). For each variable and resampling scheme, we computed 13 focal statistics layers by applying a cell-level function calculating the mean value in a circular moving window of 13 radii ranging from 25m to 5km. This dataset includes a total of 224 layers. Final values were rounded and multiplied by 100.

The detailed list of layers available is provided in SWECO25_datalayers_details_topo.csv and includes information on the category, dataset, variable name (long), variable name (short), period, sub-period, start year, end year, attribute, radii, unit, and path.

 
description: We gratefully acknowledge financial support through the Action Plan of the Swiss Biodiversity Strategy by the Federal Office for the Environment (FOEN) for financing the ValPar.CH and SwissCatchment projects. All the institutions and contributors who made the input data freely available are gratefully acknowledged.
DOI: 10.6084/m9.figshare.20013072.v1
title: Additional file 5 of Identification of novel non-HFE mutations in Chinese patients with hereditary hemochromatosis

description: Additional file 5. Table S4. Missense variants in genes associated with iron metabolism pathway identified in patients with primary iron overload by NGWES.
DOI: 10.6084/m9.figshare.5857587
title: Performance Measurement and Comparative Transcriptome Analysis Revealed the Efforts on Hybrid Improvement of Qinchuan Cattle

description: Crossbreeding can provide productive gains through heterosis, however, surveys about the effects of crossbreeding through global transcriptomic sequencing are few. This study revealed that Angus × Qinchuan cattle (AQF) have improved performance characteristics compared to Qinchuan cattle (QCF). We performed RNA-seq on the subcutaneous fat tissue of QCF and AQF. More than 42.2 million clean reads were obtained in each sample. We detected 40 and 21 breed-specific highly expressed genes (FPKM &gt; 500) in QCF and AQF, respectively. Furthermore, a total of 353 differentially expressed genes (DEGs, |log2 ratio| ≥ 1 and Probability ≥ 0.8) were found between these two groups, of which 227 genes were upregulated in AQF and 126 genes were upregulated in QCF. Functional enrichment analyses showed that breed-specific highly expressed genes and DEGs were closely related to terms such as development in AQF, and adaption or immune in QCF. In addition, we also identified the novel transcript units, alternative splicing events, single-nucleotide polymorphisms and Indels. Our results revealed differences in inherent characteristics and genetic differences when comparing QCF with AQF.
DOI: 10.6084/m9.figshare.21062100
title: Comparison of weight loss and adverse events of obesity drugs in children and adolescents: a systematic review and meta-analysis

description: The global incidence of childhood obesity is increasing. Currently, there are only few established drugs for treating adolescent obesity. Randomized clinical trials (RCTs) comparing pharmacological interventions in children with obesity are scarce; therefore, we aimed to analyze the relative efficacy and adverse reactions of these drugs and compare the effects of each drug on body mass index (BMI). This meta-analysis focused on the slimming effect, safety, and correlation of metformin, orlistat, exenatide, liraglutide, and topiramate in children with obesity. Several international databases were searched and clinical trials on the treatment of obesity in children in which the drug was administered for ≥ 6 months were included. Changes in BMI before and after treatment were analyzed using a Bayes framework, and the surface under the cumulative ranking was calculated. Of 2102 relevant articles retrieved, 21 RCTs were included in the study. Compared to other drugs, liraglutide reduced BMI the most in children with obesity. However, it was most associated with drug withdrawal due to adverse events while topiramate was least. Liraglutide had a higher probability of achieving clinically significant weight loss compared with other drugs while topiramate was superior in safety.
DOI: 10.6084/m9.figshare.21062100.v1
title: Comparison of weight loss and adverse events of obesity drugs in children and adolescents: a systematic review and meta-analysis

description: The global incidence of childhood obesity is increasing. Currently, there are only few established drugs for treating adolescent obesity. Randomized clinical trials (RCTs) comparing pharmacological interventions in children with obesity are scarce; therefore, we aimed to analyze the relative efficacy and adverse reactions of these drugs and compare the effects of each drug on body mass index (BMI). This meta-analysis focused on the slimming effect, safety, and correlation of metformin, orlistat, exenatide, liraglutide, and topiramate in children with obesity. Several international databases were searched and clinical trials on the treatment of obesity in children in which the drug was administered for ≥ 6 months were included. Changes in BMI before and after treatment were analyzed using a Bayes framework, and the surface under the cumulative ranking was calculated. Of 2102 relevant articles retrieved, 21 RCTs were included in the study. Compared to other drugs, liraglutide reduced BMI the most in children with obesity. However, it was most associated with drug withdrawal due to adverse events while topiramate was least. Liraglutide had a higher probability of achieving clinically significant weight loss compared with other drugs while topiramate was superior in safety.
DOI: 10.6084/m9.figshare.5857587.v1
title: Performance Measurement and Comparative Transcriptome Analysis Revealed the Efforts on Hybrid Improvement of Qinchuan Cattle

description: Crossbreeding can provide productive gains through heterosis, however, surveys about the effects of crossbreeding through global transcriptomic sequencing are few. This study revealed that Angus × Qinchuan cattle (AQF) have improved performance characteristics compared to Qinchuan cattle (QCF). We performed RNA-seq on the subcutaneous fat tissue of QCF and AQF. More than 42.2 million clean reads were obtained in each sample. We detected 40 and 21 breed-specific highly expressed genes (FPKM &gt; 500) in QCF and AQF, respectively. Furthermore, a total of 353 differentially expressed genes (DEGs, |log2 ratio| ≥ 1 and Probability ≥ 0.8) were found between these two groups, of which 227 genes were upregulated in AQF and 126 genes were upregulated in QCF. Functional enrichment analyses showed that breed-specific highly expressed genes and DEGs were closely related to terms such as development in AQF, and adaption or immune in QCF. In addition, we also identified the novel transcript units, alternative splicing events, single-nucleotide polymorphisms and Indels. Our results revealed differences in inherent characteristics and genetic differences when comparing QCF with AQF.
DOI: 10.17630/3e6129ea-441a-486c-be5c-23a812c93cd2
title: Direct Observation of a Uniaxial Stress-driven Lifshitz Transition in Sr2RuO4 (dataset)
DOI: 10.5281/zenodo.10635530
title: SWECO25: Transportation (trans)

description: The transportation category contains the "tlm3d" and "sonbase" datasets.

The tlm3d dataset describes the distance to the road network. After disaggregating the “swissTLM3D” source data (Swisstopo, 2021) in 6 categories (highways, primary roads, secondary roads, hiking paths, railways, and all types together), we generated layers for the Euclidean and path distance (i.e., accounting for elevation) from each of the 6 categories for every pixel in the SWECO25 grid. This dataset includes a total of 12 layers. Final values were rounded and multiplied by 100.

The sonbase dataset describes the exposure to noise levels in Switzerland, based on the daytime volume emitted by road traffic. We resampled the “Daytime road traffic noise exposure” source data (FOEN, 2018) to the SWECO25 grid. We computed 13 focal statistics layers by applying a cell-level function calculating the mean value per pixel in a circular moving window of 13 radii ranging from 25m to 5km. This dataset includes a total of 14 layers. Final values were rounded and multiplied by 100.

The detailed list of layers available is provided in SWECO25_datalayers_details_trans.csv and includes information on the category, dataset, variable name (long), variable name (short), period, sub-period, start year, end year, attribute, radii, unit, and path.

References:

Swiss Federal Office of Topography [swisstopo]. The large-scale topographic landscape model of Switzerland swissTLM3D. (Wabern, Switzerland, 2021).

Swiss Federal Office for the Environment [FOEN]. Daytime road traffic noise exposure. sonBASE GIS noise database. (Bern, Switzerland, 2018)

Külling, N., Adde, A., Fopp, F., Schweiger, A. K., Broennimann, O., Rey, P.-L., Giuliani, G., Goicolea, T., Petitpierre, B., Zimmermann, N. E., Pellissier, L., Altermatt, F., Lehmann, A., & Guisan, A. (2024). SWECO25: A cross-thematic raster database for ecological research in Switzerland. Scientific Data, 11(1), Article 1. https://doi.org/10.1038/s41597-023-02899-1

V2: metadata update
description: We gratefully acknowledge financial support through the Action Plan of the Swiss Biodiversity Strategy by the Federal Office for the Environment (FOEN) for financing the ValPar.CH and SwissCatchment projects. All the institutions and contributors who made the input data freely available are gratefully acknowledged.
DOI: 10.5281/zenodo.7981068
title: SWECO25: Transportation (trans)

description: The transportation category contains the "tlm3d" and "sonbase" datasets.

The tlm3d dataset describes the distance to the road network. After disaggregating the “swissTLM3D” source data (Swisstopo, 2021) in 6 categories (highways, primary roads, secondary roads, hiking paths, railways, and all types together), we generated layers for the Euclidean and path distance (i.e., accounting for elevation) from each of the 6 categories for every pixel in the SWECO25 grid. This dataset includes a total of 12 layers. Final values were rounded and multiplied by 100.

The sonbase dataset describes the exposure to noise levels in Switzerland, based on the daytime volume emitted by road traffic. We resampled the “Daytime road traffic noise exposure” source data (FOEN, 2018) to the SWECO25 grid. We computed 13 focal statistics layers by applying a cell-level function calculating the mean value per pixel in a circular moving window of 13 radii ranging from 25m to 5km. This dataset includes a total of 14 layers. Final values were rounded and multiplied by 100.

The detailed list of layers available is provided in SWECO25_datalayers_details_trans.csv and includes information on the category, dataset, variable name (long), variable name (short), period, sub-period, start year, end year, attribute, radii, unit, and path.

References:

Swiss Federal Office of Topography [swisstopo]. The large-scale topographic landscape model of Switzerland swissTLM3D. (Wabern, Switzerland, 2021).

Swiss Federal Office for the Environment [FOEN]. Daytime road traffic noise exposure. sonBASE GIS noise database. (Bern, Switzerland, 2018)

Külling, N., Adde, A., Fopp, F., Schweiger, A. K., Broennimann, O., Rey, P.-L., Giuliani, G., Goicolea, T., Petitpierre, B., Zimmermann, N. E., Pellissier, L., Altermatt, F., Lehmann, A., & Guisan, A. (2024). SWECO25: A cross-thematic raster database for ecological research in Switzerland. Scientific Data, 11(1), Article 1. https://doi.org/10.1038/s41597-023-02899-1

V2: metadata update
description: We gratefully acknowledge financial support through the Action Plan of the Swiss Biodiversity Strategy by the Federal Office for the Environment (FOEN) for financing the ValPar.CH and SwissCatchment projects. All the institutions and contributors who made the input data freely available are gratefully acknowledged.
DOI: 10.5281/zenodo.7981069
title: SWECO25: Transportation (trans)

description: The transportation category (SWECO25 v1.0.0) contains the "tlm3d" and "sonbase" datasets.

The tlm3d dataset describes the distance to the road network. After disaggregating the “swissTLM3D” source data (Swisstopo, 2021) in 6 categories (highways, primary roads, secondary roads, hiking paths, railways, and all types together), we generated layers for the Euclidean and path distance (i.e., accounting for elevation) from each of the 6 categories for every pixel in the SWECO25 grid. This dataset includes a total of 12 layers. Final values were rounded and multiplied by 100.

The sonbase dataset describes the exposure to noise levels in Switzerland, based on the daytime volume emitted by road traffic. We resampled the “Daytime road traffic noise exposure” source data (FOEN, 2018) to the SWECO25 grid. We computed 13 focal statistics layers by applying a cell-level function calculating the mean value per pixel in a circular moving window of 13 radii ranging from 25m to 5km. This dataset includes a total of 14 layers. Final values were rounded and multiplied by 100.

The detailed list of layers available is provided in SWECO25_datalayers_details_trans.csv and includes information on the category, dataset, variable name (long), variable name (short), period, sub-period, start year, end year, attribute, radii, unit, and path.

References:

Swiss Federal Office of Topography [swisstopo]. The large-scale topographic landscape model of Switzerland swissTLM3D. (Wabern, Switzerland, 2021).

Swiss Federal Office for the Environment [FOEN]. Daytime road traffic noise exposure. sonBASE GIS noise database. (Bern, Switzerland, 2018)
description: We gratefully acknowledge financial support through the Action Plan of the Swiss Biodiversity Strategy by the Federal Office for the Environment (FOEN) for financing the ValPar.CH and SwissCatchment projects. All the institutions and contributors who made the input data freely available are gratefully acknowledged.
DOI: 10.6084/m9.figshare.21062160
title: Additional file 1 of Identification and analysis of mitochondria-related key genes of heart failure

description: Additional file 1: Table S1. Volcano plot upregulated gene dataset.
DOI: 10.6084/m9.figshare.21062166
title: Additional file 3 of Identification and analysis of mitochondria-related key genes of heart failure

description: Additional file 3: Table S3. Module data set.
DOI: 10.6084/m9.figshare.21062184.v1
title: Additional file 9 of Identification and analysis of mitochondria-related key genes of heart failure

description: Additional file 9: Table S9. Lncrna upregulated gene dataset.
DOI: 10.6084/m9.figshare.21062160.v1
title: Additional file 1 of Identification and analysis of mitochondria-related key genes of heart failure

description: Additional file 1: Table S1. Volcano plot upregulated gene dataset.
DOI: 10.6084/m9.figshare.21062184
title: Additional file 9 of Identification and analysis of mitochondria-related key genes of heart failure

description: Additional file 9: Table S9. Lncrna upregulated gene dataset.
DOI: 10.6084/m9.figshare.21062166.v1
title: Additional file 3 of Identification and analysis of mitochondria-related key genes of heart failure

description: Additional file 3: Table S3. Module data set.
DOI: 10.6084/m9.figshare.21062172
title: Additional file 5 of Identification and analysis of mitochondria-related key genes of heart failure

description: Additional file 5: Table S5. Key genes and immune correlation dataset.
DOI: 10.6084/m9.figshare.21062172.v1
title: Additional file 5 of Identification and analysis of mitochondria-related key genes of heart failure

description: Additional file 5: Table S5. Key genes and immune correlation dataset.
DOI: 10.6084/m9.figshare.21062178.v1
title: Additional file 7 of Identification and analysis of mitochondria-related key genes of heart failure

description: Additional file 7: Table S7. Upregulated miRNA dataset.
DOI: 10.6084/m9.figshare.12667674.v1
title: Additional file 4 of QTL Mapping and Candidate Gene Analysis for Alkali Tolerance in Japonica Rice at the bud Stage Based on Linkage Mapping and Genome-Wide Association Study

description: Additional file 4 : Table S3 Primers used for qRT-PCR and relative expression in this study.
DOI: 10.6084/m9.figshare.13192008
title: Additional file 7 of Loss function of SL (sekiguchi lesion) in the rice cultivar Minghui 86 leads to enhanced resistance to (hemi)biotrophic pathogens

description: Additional file 7: Table S1. Significant differentially expressed genes in sl-MH-1-mock/MH86-mock.
DOI: 10.17630/39426414-eb9b-4b7f-b078-2f88f96cdd76
title: The shield of self-compassion: a buffer against disordered eating risk from physical appearance perfectionism (dataset)

description: The dataset comprises the data used in the analyses and on which the results are based. Due to ethical and legal reasons twelve participants' data were excluded due to lack of consent to share their data.
DOI: 10.5281/zenodo.10419473
title: Consumer Ethics Scimat
DOI: 10.5281/zenodo.10419474
title: Consumer Ethics Scimat
DOI: 10.25549/usctheses-ouc11359953
title: 00001.tif
DOI: 10.13011/m3-q18q-hx55
title: Data files for plots