cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10270370.v1
title: MOESM2 of Microbial communities of the house fly Musca domestica vary with geographical location and habitat

description: Additional file 2: Table S1. Overview of sampling success rate.
DOI: 10.6084/m9.figshare.10270178
title: WTE morphometric data.csv

description: Morphological measurements from Tasmanian wedge-tailed eagles.
DOI: 10.6084/m9.figshare.10270106
title: The fungal mitochondrial <i>Nad5</i> pan-genic intron landscape

description: An intron landscape was prepared for the fungal mitochondrial <i>nad5</i> gene. A hundred and eighty-eight fungal species were examined and a total of 265 introns were noted to be located in 29 intron insertion sites within the examined <i>nad5</i> genes. Two hundred and sixty-three introns could be classified as group I types and two group II introns were noted. One additional group II intron module was identified nested within a composite group I intron. Based on features related to RNA secondary structures, introns can be classified into different subtypes and it was observed that intron insertion-sites are biased towards phase 0 and they appear to be specific to an intron type. Intron landscapes could be used as a guide map to predict the location of fungal mtDNA mobile introns, which are composite elements that include a ribozyme component and in some instances open reading frames encoding homing endonucleases or reverse transcriptases and all of these have applications in biotechnology.
DOI: 10.6084/m9.figshare.10270112
title: DRUC-CCG

description: IEEE 6-bus, 39-bus and 118-bus test systems with wind farms and load profile. The data can be used in a unit commitment model, and has been used in our recent article that deals with a distributionally robust SCUC problem.
DOI: 10.6084/m9.figshare.10270178.v1
title: WTE morphometric data.csv

description: Morphological measurements from Tasmanian wedge-tailed eagles.
DOI: 10.6084/m9.figshare.10270043
title: Somatic Data Matrix TNT File

description: The TNT file for the somatic character matrix used in the cladistic analysis.<br><br>This work is supported by U. S. National Science Foundation grants DBI-1356381 and DEB-1353252.
DOI: 10.6084/m9.figshare.10270106.v1
title: The fungal mitochondrial <i>Nad5</i> pan-genic intron landscape

description: An intron landscape was prepared for the fungal mitochondrial <i>nad5</i> gene. A hundred and eighty-eight fungal species were examined and a total of 265 introns were noted to be located in 29 intron insertion sites within the examined <i>nad5</i> genes. Two hundred and sixty-three introns could be classified as group I types and two group II introns were noted. One additional group II intron module was identified nested within a composite group I intron. Based on features related to RNA secondary structures, introns can be classified into different subtypes and it was observed that intron insertion-sites are biased towards phase 0 and they appear to be specific to an intron type. Intron landscapes could be used as a guide map to predict the location of fungal mtDNA mobile introns, which are composite elements that include a ribozyme component and in some instances open reading frames encoding homing endonucleases or reverse transcriptases and all of these have applications in biotechnology.
DOI: 10.6084/m9.figshare.10270016
title: Male Genitalia Matrix TNT File

description: The TNT file for the male genitalia character matrix used in the cladistic analysis.<br><br>This work is supported by U. S. National Science Foundation grants DBI-1356381 and DEB-1353252.
DOI: 10.6084/m9.figshare.10270043.v1
title: Somatic Data Matrix TNT File

description: The TNT file for the somatic character matrix used in the cladistic analysis.<br><br>This work is supported by U. S. National Science Foundation grants DBI-1356381 and DEB-1353252.
DOI: 10.6084/m9.figshare.10270112.v1
title: DRUC-CCG

description: IEEE 6-bus, 39-bus and 118-bus test systems with wind farms and load profile. The data can be used in a unit commitment model, and has been used in our recent article that deals with a distributionally robust SCUC problem.
DOI: 10.6084/m9.figshare.10270016.v1
title: Male Genitalia Matrix TNT File

description: The TNT file for the male genitalia character matrix used in the cladistic analysis.<br><br>This work is supported by U. S. National Science Foundation grants DBI-1356381 and DEB-1353252.
DOI: 10.6084/m9.figshare.10270013
title: Combined Data Matrix TNT File

description: The TNT file for the combined character matrix used in the cladistic analysis.<br><br>This work is supported by U. S. National Science Foundation grants DBI-1356381 and DEB-1353252.
DOI: 10.6084/m9.figshare.10269950
title: Sequence alignments and partitioning files for collembolan phylogenetic reconstructions

description: BUSCO and UCE matrices and partitioning files for collembolan phylogenetic reconstructions
DOI: 10.6084/m9.figshare.10269947
title: BUSCO dataset designed for Collembola

description: BUSCO dataset designed for Collembola
DOI: 10.5281/zenodo.4001628
title: Raw data of Call et al. (2020), Journal of Cereal Science 93: 102974

description: Raw data for the publication "Effects of species and breeding on wheat protein composition" by Call et al. (2020), published in Journal of Cereal Science 93: 102974. ( https://doi.org/10.1016/j.jcs.2020.102974 )
description: The research was funded by FFG (Austrian Research Promotion Agency), project ID-WHEAT (FFG project no. 858540).
DOI: 10.6084/m9.figshare.10269944
title: data.rar

description: <strong> </strong>Degradation of norfloxacin from aqueous solution by nanoscale zero-valent iron activated persulfate process <strong> </strong>
DOI: 10.25955/5e4234f062f07
title: Bush Medicine Project Database Export S2 2019

description: Raw Data: Plant Sample, Plant Extract and Antimicrobial Activity Database for 2019 from the Bush Medicine Project<br>If you want to use this data it is licenced using a CC BY-NC-SA licence. We would love to know what you use it for so please get in contact (bm.long@federation.edu.au) and share your creations. <br>
DOI: 10.6084/m9.figshare.10269944.v1
title: data.rar

description: <strong> </strong>Degradation of norfloxacin from aqueous solution by nanoscale zero-valent iron activated persulfate process <strong> </strong>
DOI: 10.6084/m9.figshare.10269947.v1
title: BUSCO dataset designed for Collembola

description: BUSCO dataset designed for Collembola
DOI: 10.6084/m9.figshare.10269950.v2
title: Sequence alignments and partitioning files for collembolan phylogenetic reconstructions

description: BUSCO and UCE matrices and partitioning files for collembolan phylogenetic reconstructions
DOI: 10.6084/m9.figshare.10269932
title: UCE probe set for Collembola

description: UCE probe set for Collembola
DOI: 10.6084/m9.figshare.10269941
title: Two-dimensional director configurations in a nematic-filled cylindrical capillary with the hybrid director alignment on its surface

description: We analytically calculate two-dimensional equilibrium configurations of the nematic liquid crystal (NLC) director in a right cylindrical capillary with the hybrid director alignment on its inner surface. A part of this surface is treated to impose the strong homeotropic alignment, while on the remaining part the strong circular alignment, perpendicular to the capillary axis, is imposed. Owing to the system homogeneity along the capillary axis, a disclination line emerges in the bulk of the NLC, which runs parallel to the axis. It is shown that there exist either one or two equilibrium locations of the disclination line depending on the ratio of capillary surface parts with homeotropic and circular alignment. The technique that allows to obtain an analytical expression for the system free energy as a function of a disclination line location is presented. It considerably simplifies calculations and can be used while solving a variety of problems in which a defect location is sought.
DOI: 10.6084/m9.figshare.10269941.v1
title: Two-dimensional director configurations in a nematic-filled cylindrical capillary with the hybrid director alignment on its surface

description: We analytically calculate two-dimensional equilibrium configurations of the nematic liquid crystal (NLC) director in a right cylindrical capillary with the hybrid director alignment on its inner surface. A part of this surface is treated to impose the strong homeotropic alignment, while on the remaining part the strong circular alignment, perpendicular to the capillary axis, is imposed. Owing to the system homogeneity along the capillary axis, a disclination line emerges in the bulk of the NLC, which runs parallel to the axis. It is shown that there exist either one or two equilibrium locations of the disclination line depending on the ratio of capillary surface parts with homeotropic and circular alignment. The technique that allows to obtain an analytical expression for the system free energy as a function of a disclination line location is presented. It considerably simplifies calculations and can be used while solving a variety of problems in which a defect location is sought.
DOI: 10.6084/m9.figshare.10269950.v1
title: matrices for collembolan phylogenetic reconstructions

description: BUSCO and UCE matrices and partitioning files for collembolan phylogenetic reconstructions
DOI: 10.6084/m9.figshare.10269932.v2
title: UCE probe set for Collembola

description: UCE probe set for Collembola
DOI: 10.6084/m9.figshare.10269932.v1
title: UCE probe set for Collembola

description: UCE probe set for Collembola
DOI: 10.6084/m9.figshare.10269857
title: Dataset for: Modeling the Overdetection of Screen-Identified Cancers in Population-Based Cancer Screening with the Coxian Phase-Type Markov Process

description: Modeling overdetection resulting from screening often uses the conventional competing risk model. This model assigns screen-detected cases dying from other causes as overdetection modeled by a one-jump process, which may not be true for the censored overdetected cases. To relax this restrictive assumption, accommodate a finite Markov process for overdetection, and dispense with long-term follow-up until death, we propose a generalized Coxian phase-type Markov process to distinguish the progressive latent multistate pathway from the nonprogressive (overdetected) latent multistate pathway. Various new likelihood functions were developed to estimate the transition parameters with the available data accrued at the time of diagnosis. The proportion of overdetected cancers by the cured model was further estimated by using parameters with and without distinguishing between the two latent pathways. While perturbation analyses were conducted by changing their parameters to assess their effects on overdetection, the results, including of asymptotic analyses, were very robust for an overdetection rate higher than 20% but not for low overdetection rates. These two scenarios were demonstrated by applying the Coxian phase-type model to prostate cancer and breast cancer screening, yielding a substantial proportion of overdetected prostate cancer (60%) attributed to the prostate specific antigen test and a small fraction of overdetected breast cancer (3%) detected by mammography. This kind of variation in overdetection elucidated by the Coxian phase-type Markov process provides new insights into the quantitative mechanisms producing overdetection, which is informative for evaluating the benefits and risks of various types of population-based cancer screening programs.
DOI: 10.6084/m9.figshare.10269845
title: UI logs

description: This dataset contains a set of UI logs recorded by user, that describe execution of a data transferring task
DOI: 10.6084/m9.figshare.10269857.v1
title: Dataset for: Modeling the Overdetection of Screen-Identified Cancers in Population-Based Cancer Screening with the Coxian Phase-Type Markov Process

description: Modeling overdetection resulting from screening often uses the conventional competing risk model. This model assigns screen-detected cases dying from other causes as overdetection modeled by a one-jump process, which may not be true for the censored overdetected cases. To relax this restrictive assumption, accommodate a finite Markov process for overdetection, and dispense with long-term follow-up until death, we propose a generalized Coxian phase-type Markov process to distinguish the progressive latent multistate pathway from the nonprogressive (overdetected) latent multistate pathway. Various new likelihood functions were developed to estimate the transition parameters with the available data accrued at the time of diagnosis. The proportion of overdetected cancers by the cured model was further estimated by using parameters with and without distinguishing between the two latent pathways. While perturbation analyses were conducted by changing their parameters to assess their effects on overdetection, the results, including of asymptotic analyses, were very robust for an overdetection rate higher than 20% but not for low overdetection rates. These two scenarios were demonstrated by applying the Coxian phase-type model to prostate cancer and breast cancer screening, yielding a substantial proportion of overdetected prostate cancer (60%) attributed to the prostate specific antigen test and a small fraction of overdetected breast cancer (3%) detected by mammography. This kind of variation in overdetection elucidated by the Coxian phase-type Markov process provides new insights into the quantitative mechanisms producing overdetection, which is informative for evaluating the benefits and risks of various types of population-based cancer screening programs.
DOI: 10.6084/m9.figshare.10269725
title: data_source_code.zip

description: Data and source code of the paper "MARC: a robust method for multiple-aspect trajectory classification via space, time, and semantic embeddings". Detailed information of the data can be found in the paper.
DOI: 10.6084/m9.figshare.10269704
title: Dataset for "Vitamin D binding protein is required to utilize skin-generated vitamin D" Duchow et al.

description: Dataset provided is data presented in the publication "Vitamin D binding protein is required to utilize skin-generated vitamin D" Duchow et al.
DOI: 10.6084/m9.figshare.10269650
title: openaccessweek-2019-tweet-ids.txt

description: The dataset contains tweet identifiers collected on October 25 and October 26, 2019 with the following hashtags: #oaweek, #oaweek19, #oaweek2019, #openaccessweek, and #openaccessweek2019.
DOI: 10.6084/m9.figshare.10269650.v1
title: openaccessweek-2019-tweet-ids.txt

description: The dataset contains tweet identifiers collected on October 25 and October 26, 2019 with the following hashtags: #oaweek, #oaweek19, #oaweek2019, #openaccessweek, and #openaccessweek2019.
DOI: 10.6084/m9.figshare.10269614
title: Supplementary Data accompanying: "Motor output and control input in flapping flight: a compact model of the deforming wing kinematics of manoeuvring hoverflies".

description: This description provides a summary of the data and code supplied in support of the following paper:<br><b>Nagesh, I., Walker, S.M., Taylor, G.K. </b>(2019). Motor output and control input in flapping flight: a compact model of the deforming wing kinematics of manoeuvring hoverflies. <i>J. Roy. Soc. Interface.</i> https://doi.org/10.1098/rsif.2019.0435<br>This archive contains the following files:<br><b>SupplementaryData1.zip</b>. This zipped folder contains all of the data used in the analysis in the main paper, together with code for implementing the various steps of the analysis, both in MATLAB format. Running the m-files in sequence produces a reduced-order approximation and reconstruction of the data. See README file and comments in the various m-files for further details.<br><b>SupplementaryData2.zip</b>. This zipped folder contains plain text files X_L and X_P corresponding to the original data matrices in units of degrees, together with the results of the functional principal components analysis on these data matrices, comprising: (i) the corresponding mean matrices, contained in the files XBar_L and XBar_P; (ii) the principal component (PC) score matrices contained in the files W_L and W_P; (iii) the PC coefficient matrices contained in the files V_L and V_P ; and (iv) the vectors of eigenvalues on the diagonals of the matrices contained in the files Lambda_L and Lambda_P. The same folder also contains a vector giving the period of each wingbeat (ms), a vector giving the wing length for each wingbeat (m), and matrices containing the chordwise and spanwise coordinates of 100 points on both the leading and trailing edges of a representative wing outline of <i>Eristalis</i>. These coordinates are expressed in dimensionless form, and may be put in dimensional form by multiplying them by the wing length. The data matrices and PC score matrices of length 2<i>N</i>=53,082 are partitioned such that the first <i>N</i>=26,541 rows correspond to the left wingbeats, and the next <i>N</i>=26,541 rows correspond to the right wingbeats. See Materials and methods section of the original paper for details and nomenclature.
DOI: 10.6084/m9.figshare.10269566
title: Annotation file (gff3) for Caligus rogercresseyi genome

description: Annotation files for the sea louse Caligus rogercresseyi genome
DOI: 10.6084/m9.figshare.10266737
title: Temperature data (32 sites)

description: Hourly temperature data for 32 sites in Ontario (Canada), measured between Jan 2011- Dec 2015. Data was compiled from both HOBO U23 Pro v2 Data Loggers (U23-001)) and weather stations in close proximity, and allowed for the estimation of the following annual variables: ‘<i>spring onset’</i>, ‘<i>calling date</i>’, ‘<i>active period</i>’: period between spring onset and calling date; and ‘<i>breeding period</i>’: period between the calling date and the last day of June.
DOI: 10.6084/m9.figshare.10266737.v1
title: Temperature data (32 sites)

description: Temperature data for 32 sites in Ontario (Canada), measured between 2011-2015. Data was compiled from both HOBO U23 Pro v2 Data Loggers (U23-001)) and weather stations in close proximity, and allowed for the estimation of the following annual variables: ‘<i>spring onset’</i>, ‘<i>calling date</i>’, ‘<i>active period</i>’: period between spring onset and calling date; and ‘<i>breeding period</i>’: period between the calling date and the last day of June.
DOI: 10.6084/m9.figshare.10266650
title: Dates per site (spring onset to end of breeding period)

description: Site dates for 32 sites in Ontario (Canada) sampled for <i>Rana pipiens</i> between 2012-2014. Data contains information regarding the following dates: spring onset (first day on which the mean daytime temperature exceeded zero degrees Celsius for fourteen consecutive days), calling date (daytime air temperature persistently averages 15ºC), end of breeding period (last day of June), and active period length (days; period between spring onset and beginning of breeding period). <br>
DOI: 10.6084/m9.figshare.10266641
title: Individual data (41 sampled populations)

description: Individual level data for 2223 <i>Rana pipiens</i> sampled across 41 sites in Ontario (Canada) between 2012-2014. Data contains sampled date, <i>Bd</i> infection status (presence and mean intensity), development status, site active period length (period between spring onset and beginning of breeding period), site mean temperature (˚C) during active and breeding period, site mean precipitation (˚C) during active and breeding period, site hydroshed area (km<sup>2</sup>), site river density (within 10km buffer of site centroid) and site road density (within 50km buffer of site centroid).
DOI: 10.6084/m9.figshare.10266632
title: Site averages (14 repeat sampled populations).xlsx

description: Site averages for 14 repeat sampled sites in Ontario (Canada) between 2012-2014. Data contains information regarding no. of <i>Rana pipiens</i> sampled for <i>Bd</i> infection (prevalence and mean intensity), active period length (period between spring onset and beginning of breeding period), mean temperature (˚C) during active and breeding period, mean precipitation (˚C) during active and breeding period, hydroshed area (km<sup>2</sup>), river density (within 10km buffer of site centroid) and road density (within 50km buffer of site centroid).
DOI: 10.6084/m9.figshare.10266641.v1
title: Individual data (41 sampled populations)

description: Individual level data for 2223 <i>Rana pipiens</i> sampled across 41 sites in Ontario (Canada) between 2012-2014. Data contains sampled date, <i>Bd</i> infection status (presence and mean intensity), development status, site active period length (period between spring onset and beginning of breeding period), site mean temperature (˚C) during active and breeding period, site mean precipitation (˚C) during active and breeding period, site hydroshed area (km<sup>2</sup>), site river density (within 10km buffer of site centroid) and site road density (within 50km buffer of site centroid).
DOI: 10.6084/m9.figshare.10266650.v2
title: Dates per site (spring onset to end of breeding period)

description: Site dates for 32 sites in Ontario (Canada) sampled for <i>Rana pipiens</i> between 2012-2014. Data contains information regarding the following dates: spring onset (first day on which the mean daytime temperature exceeded zero degrees Celsius for fourteen consecutive days), calling date (daytime air temperature persistently averages 15ºC), end of breeding period (last day of June), and active period length (days; period between spring onset and beginning of breeding period). <br>
DOI: 10.6084/m9.figshare.10266737.v2
title: Temperature data (32 sites)

description: Hourly temperature data for 32 sites in Ontario (Canada), measured between Jan 2011- Dec 2015. Data was compiled from both HOBO U23 Pro v2 Data Loggers (U23-001)) and weather stations in close proximity, and allowed for the estimation of the following annual variables: ‘<i>spring onset’</i>, ‘<i>calling date</i>’, ‘<i>active period</i>’: period between spring onset and calling date; and ‘<i>breeding period</i>’: period between the calling date and the last day of June.
DOI: 10.6084/m9.figshare.10266632.v1
title: Site averages (14 repeat sampled populations).xlsx

description: Site averages for 14 repeat sampled sites in Ontario (Canada), containing information regarding no. of <i>Rana pipiens</i> sampled for <i>Bd</i> infection (prevalence and mean intensity), active period length (period between spring onset and beginning of breeding period), mean temperature (˚C) during active and breeding period, mean precipitation (˚C) during active and breeding period, hydroshed area (km<sup>2</sup>), river density (within 10km buffer of site centroid) and road density (within 50km buffer of site centroid).
DOI: 10.6084/m9.figshare.10266650.v1
title: Dates per site (spring onset to end of breeding period)

description: Site dates for 32 sites in Ontario (Canada) sampled for <i>Rana pipiens</i> between 2012-2014. Data contains information regarding the following dates: spring onset (first day on which the mean daytime temperature exceeded zero degrees Celsius for fourteen consecutive days), calling date (daytime air temperature persistently averages 15ºC), end of breeding period (last day of June), and active period length (days; period between spring onset and beginning of breeding period). <br>
DOI: 10.6084/m9.figshare.10266587
title: Data on femoral length and skull length for tetrapods from Cranial anatomy and taxonomy of the erythrosuchid archosauriform <i>‘Vjushkovia triplicostata’</i> Huene, 1960, from the Early Triassic of European Russia

description: Data on femoral length and skull length used in analyses comparing the ratio between these two measurements across Tetrapoda
DOI: 10.6084/m9.figshare.10266587.v1
title: Data on femoral length and skull length for tetrapods from Cranial anatomy and taxonomy of the erythrosuchid archosauriform <i>‘Vjushkovia triplicostata’</i> Huene, 1960, from the Early Triassic of European Russia

description: Data on femoral length and skull length used in analyses comparing the ratio between these two measurements across Tetrapoda