cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hh7wd4
title: Occurrence Download

description: A dataset containing 696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Squatina californica Ayres, 1859"
 ]
}

 The dataset includes 696 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006720-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zuxxc0
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heuchera pulchella Wooton & Standl."
 ]
}

 The dataset includes 31 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003839-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tu9tsc
title: Occurrence Download

description: A dataset containing 6306409 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Squamata"
 ]
}

 The dataset includes 6306409 records from 2388 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006709-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mq2rjm
title: Occurrence Download

description: A dataset listing the 510 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de Macroinvertebrados Acuáticos de la Amazonia Colombiana"
 ]
}

 The dataset's 510 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030320-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbnbgm
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stipa purpurea Griseb."
 ]
}

 The dataset includes 782 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030327-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9kop3h8
title: Upper Mississippi River Floodplain forest floor vegetation and inundation metrics in Pools 4 and 8, 2015-2017

description: We conducted this study in Upper Mississippi River Pools 4 and 8 to document the occurrence and cover of Phalaris arundinacea and other forest floor plants in UMR floodplain forests and relate measures of abundance of Phalaris, and community composition and diversity to estimates of flood duration which can exhibit high spatial heterogeneity. We used modeled inundation duration which allowed us to sample at randomly selected forest “places” across a large spatial scale in forest areas that had a range of tree canopy cover and basal area. We also evaluated changes in plant composition, Phalaris and wood nettle cover and silver maple seedling persistence between years relative to modeled inundation duration. From these repeated samples we also asked whether Phalaris and wood nettle cover the 1st year influenced plant composition the following year. Forest floor vegetation was quantified as percent cover within 5, 4m radius plots: one in the center and 4 others centered 25m from the center plot in the 4 cardinal directions. Percent cover was recorded to the nearest 5% for cover over 5%, to nearest 1 percent below 5%. We also noted species that were rare (1-5 individuals with less than 1%) as 0.1% cover, or numerous with insignificant cover (<1% cover), as 0.5% cover. Summing cover over all species in a plot could yield a number greater than 100, or greater than the total cover estimated for that plot if plant canopies overlapped. The species abbreviations (codes) follow the USDA Plants website conventions (https://plants.sc.egov.usda.gov/home).
DOI: 10.15468/dl.4ad9wj
title: Occurrence Download

description: A dataset containing 844 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección Aracnológica del IADIZA-CCT CONICET Mendoza: IADIZA-CAI"
 ]
}

 The dataset includes 844 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030328-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z65qgy
title: Occurrence Download

description: A dataset containing 181539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Swiss National Mollusca Databank"
 ]
}

 The dataset includes 181539 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030324-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c56m33g07
title: MassIVE MSV000095951 - The Role of the Co-Chaperone DNAJB11 in Polycystic Kidney Disease: Molecular Mechanisms and Cellular Origin of Cyst Formation
title: Autosomal dominant polycystic kidney disease (ADPKD) is caused by mutations in PKD1 and PKD2, encoding polycystin-1 (PC1) and polycystin-2 (PC2), which are required for the regulation of the renal tubular diameter. Loss of polycystin function results in cyst formation. Atypical forms of ADPKD are caused by mutations in genes encoding endoplasmic reticulum (ER)-resident proteins through mechanisms that are not well understood. Here, we investigate the function of DNAJB11, an ER co-chaperone associated with atypical ADPKD. We generated mouse models with constitutive and conditional Dnajb11 inactivation and Dnajb11-deficient renal epithelial cells to investigate the mechanism underlying autosomal dominant inheritance, the specific cell types driving cyst formation, and molecular mechanisms underlying DNAJB11-dependent polycystic kidney disease. We show that biallelic loss of Dnajb11 causes cystic kidney disease and fibrosis, mirroring human disease characteristics. In contrast to classical ADPKD, cysts predominantly originate from proximal tubules. Cyst formation begins in utero and the timing of Dnajb11 inactivation strongly influences disease severity. Furthermore, we identify impaired PC1 cleavage as a potential mechanism underlying DNAJB11-dependent cyst formation. Proteomic analysis of Dnajb11- and Pkd1-deficient cells reveals common and distinct pathways and dysregulated proteins, providing a foundation to better understand phenotypic differences between different forms of ADPKD.
DOI: 10.15468/dl.tvqwna
title: Occurrence Download

description: A dataset containing 477139 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Squamata",
 "TaxonKey is Crocodylia",
 "TaxonKey is Testudines",
 "TaxonKey is Sphenodontia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "and" : [
 "DecimalLongitude is greater than -10.4702778",
 "DecimalLongitude is less than 1.762499",
 "DecimalLatitude is greater than 49.9584732",
 "DecimalLatitude is less than 60.8395844",
 "Country is United Kingdom of Great Britain and Northern Ireland"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 477139 records from 226 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030325-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3evae2
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Idas coppingeri (E.A.Smith, 1885)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030330-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmnhx5
title: Occurrence Download

description: A dataset containing 938 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((59.37948 -0.61103,146.58507 -0.61103,146.58507 56.48322,59.37948 56.48322,59.37948 -0.61103))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Betula albosinensis Burkill"
 ]
}

 The dataset includes 938 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030331-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6spacw
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stipa purpurea Griseb."
 ]
}

 The dataset includes 782 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030332-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rb5n8z
title: Occurrence Download

description: A dataset containing 2601 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Squamata",
 "TaxonKey is Crocodylia",
 "TaxonKey is Testudines",
 "TaxonKey is Sphenodontia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "and" : [
 "DecimalLongitude is greater than -10.4702778",
 "DecimalLongitude is less than 1.762499",
 "DecimalLatitude is greater than 49.9584732",
 "DecimalLatitude is less than 60.8395844",
 "Country is Isle of Man"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 2601 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030333-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9479877
title: Mahanagar Yatayat Transport Dataset
DOI: 10.15468/dl.a96dj4
title: Occurrence Download

description: A dataset containing 10090 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Squamata",
 "TaxonKey is Crocodylia",
 "TaxonKey is Testudines",
 "TaxonKey is Sphenodontia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "and" : [
 "DecimalLongitude is greater than -10.4702778",
 "DecimalLongitude is less than 1.762499",
 "DecimalLatitude is greater than 49.9584732",
 "DecimalLatitude is less than 60.8395844",
 "Country is Ireland"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 10090 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030334-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13839234
title: Test dataset
DOI: 10.5281/zenodo.13837008
title: Drone-based geomorphology mapping of Borebreen in Svalbard, 2024

description: This database contains drone-based mapping data of geomorphological areas in front of Borebreen, Svalbard, Norway. The dataset was generated using a structure-from-motion (SfM) method using drone-based imagery. The data was processed with Agisoft Metashape and the processed data consists of digital elevation models (DEMs) in georeferenced .TIF file format, orthomosaic maps in georeferenced .TIF file format, and textured 3D models in .STL file format. In addition, a process report in .PDF file format is included for each dataset. Mapping was conducted with a DJI Mavic 3 Pro Enterprise. The mapping was conducted August/September 2024.
DOI: 10.5281/zenodo.13837009
title: Drone-based geomorphology mapping of Borebreen in Svalbard, 2024

description: This database contains drone-based mapping data of geomorphological areas in front of Borebreen, Svalbard, Norway. The dataset was generated using a structure-from-motion (SfM) method using drone-based imagery. The data was processed with Agisoft Metashape and the processed data consists of digital elevation models (DEMs) in georeferenced .TIF file format, orthomosaic maps in georeferenced .TIF file format, and textured 3D models in .STL file format. In addition, a process report in .PDF file format is included for each dataset. Mapping was conducted with a DJI Mavic 3 Pro Enterprise. The mapping was conducted August/September 2024.
DOI: 10.7266/n7cv4fsn
title: R/V Pelican: PE13-09 Hydrographic (CTD) Data, Gulf of Mexico, September 3-7, 2012
DOI: 10.5281/zenodo.13839118
title: Supplementary Information - Chapter 1. Transcriptomic investigation of the molecular mechanisms underlying resistance to the neonicotinoid thiamethoxam and the pyrethroid lambda-cyhalothrin in Euschistus heros (Hemiptera: Pentatomidae)

description: Laboratory-selected resistant strains of Euschistus heros to thiamethoxam (NEO) and lambda-cyhalothrin (PYR) were recently reported in Brazil. However, the mechanisms conferring resistance to these insecticides in E. heros remain unresolved. We utilized comparative transcriptome profiling and single nucleotide polymorphism (SNP) calling of susceptible and resistant strains of E. heros to investigate the molecular mechanism(s) underlying resistance. The E. heros transcriptome was assembled, generating 91 673 transcripts with a mean length of 720 bp and N50 of 1795 bp. Comparative gene expression analysis between the susceptible (SUS) and NEO strains identified 215 significantly differentially expressed (DE) transcripts. DE transcripts associated with the xenobiotic metabolism were all up-regulated in the NEO strain. The comparative analysis of the SUS and PYR strains identified 204 DE transcripts, including an esterase (esterase FE4), a glutathione-S-transferase, an ABC transporter (ABCC1) and aquaporins that were up-regulated in the PYR strain. We identified 9588 and 15 043 nonsynonymous SNPs in the PYR and NEO strains. One of the SNPs (D70N) detected in the NEO strain occurs in a subunit (α5) of the nAChRs, the target site of neonicotinoid insecticides. Nevertheless, this residue position in α5 is not conserved among insects. Neonicotinoid and pyrethroid resistance in laboratory-selected E. heros is associated with a potential metabolic resistance mechanism by the overexpression of proteins commonly involved in the three phases of xenobiotic metabolism. Together these findings provide insight into the potential basis of resistance in E. heros and will inform the development and implementation of resistance management strategies against this important pest.

*Published in: Pest Management Science 79.12 (2023): 5349-5361. https://doi.org/10.1002/ps.7745
DOI: 10.5281/zenodo.13839119
title: Supplementary Information - Chapter 1. Transcriptomic investigation of the molecular mechanisms underlying resistance to the neonicotinoid thiamethoxam and the pyrethroid lambda-cyhalothrin in Euschistus heros (Hemiptera: Pentatomidae)

description: Laboratory-selected resistant strains of Euschistus heros to thiamethoxam (NEO) and lambda-cyhalothrin (PYR) were recently reported in Brazil. However, the mechanisms conferring resistance to these insecticides in E. heros remain unresolved. We utilized comparative transcriptome profiling and single nucleotide polymorphism (SNP) calling of susceptible and resistant strains of E. heros to investigate the molecular mechanism(s) underlying resistance. The E. heros transcriptome was assembled, generating 91 673 transcripts with a mean length of 720 bp and N50 of 1795 bp. Comparative gene expression analysis between the susceptible (SUS) and NEO strains identified 215 significantly differentially expressed (DE) transcripts. DE transcripts associated with the xenobiotic metabolism were all up-regulated in the NEO strain. The comparative analysis of the SUS and PYR strains identified 204 DE transcripts, including an esterase (esterase FE4), a glutathione-S-transferase, an ABC transporter (ABCC1) and aquaporins that were up-regulated in the PYR strain. We identified 9588 and 15 043 nonsynonymous SNPs in the PYR and NEO strains. One of the SNPs (D70N) detected in the NEO strain occurs in a subunit (α5) of the nAChRs, the target site of neonicotinoid insecticides. Nevertheless, this residue position in α5 is not conserved among insects. Neonicotinoid and pyrethroid resistance in laboratory-selected E. heros is associated with a potential metabolic resistance mechanism by the overexpression of proteins commonly involved in the three phases of xenobiotic metabolism. Together these findings provide insight into the potential basis of resistance in E. heros and will inform the development and implementation of resistance management strategies against this important pest.

*Published in: Pest Management Science 79.12 (2023): 5349-5361. https://doi.org/10.1002/ps.7745
DOI: 10.5281/zenodo.13839239
title: EFT linear parametrization MG FarFromLCDM

description: EFT linear parametrization MG FarFromLCDM
DOI: 10.5281/zenodo.13839240
title: EFT linear parametrization MG FarFromLCDM

description: EFT linear parametrization MG FarFromLCDM
DOI: 10.15468/dl.44bm27
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Linepithema leucomelas (Emery, 1894), Linepithema hirsutum Escárraga & Guerrero, 2016, Linepithema cryptobioticum Wild, Linepithema anathema, Solenopsis solenopsidis (Kusnezov, 1953), Pseudoatta argentina Gallardo, 1916, Pheidole microgyna Wheeler, 1928, Pheidole argentina (Bruch, 1932), Pheidole symbiotica Wasmann, 1909, Pheidole acutidens (Santschi, 1922), Antichthonidris bidentata (Mayr, 1887), Oxyepoecus inquilinus Kusnezov, 1952, Oxyepoecus daguerrei (Santschi, 1933), Oxyepoecus bruchi Santschi, 1926)"
 ]
}

 The dataset includes 178 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030335-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rybqx3
title: Occurrence Download

description: A dataset containing 29199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is ARGOS Satellite Tracking of animals",
 "Country is Chile"
 ]
}

 The dataset includes 29199 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030337-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5weedu
title: Occurrence Download

description: A dataset containing 16001 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Edinburgh (E) Herbarium Specimens",
 "Country is Chile"
 ]
}

 The dataset includes 16001 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030336-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndgy6q
title: Occurrence Download

description: A dataset containing 35159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.",
 "Country is Chile"
 ]
}

 The dataset includes 35159 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030338-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2eh2ku
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Doryfera ludovicae (Bourcier & Mulsant, 1847)"
 ]
}

 The dataset includes 147 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030340-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27102964
title: Paper in Plos One

description: Data from for a social memory test in rats that involves a 30 min familiarization session and test 24 h later.
DOI: 10.6084/m9.figshare.27102964.v1
title: Paper in Plos One

description: Data from for a social memory test in rats that involves a 30 min familiarization session and test 24 h later.
DOI: 10.15468/dl.t9674r
title: Occurrence Download

description: A dataset containing 17121 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NEON Biorepository Tick Collection (Pathogen Extracts)"
 ]
}

 The dataset includes 17121 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030339-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13839235
title: Test dataset
DOI: 10.5281/zenodo.13839057
title: Flowtigs datasets

description: This dataset was compiled using data from the following publications:

Shafranskaya, D., Kale, V., Finn, R., Lapidus, A. L., Korobeynikov, A., & Prjibelski, A. D. (2022). MetaGT: A pipeline for de novo assembly of metatranscriptomes with the aid of metagenomic data. Frontiers in Microbiology, 13, 981458.

Singer, E., Andreopoulos, B., Bowers, R. M., Lee, J., Deshpande, S., Chiniquy, J., ... & Woyke, T. (2016). Next generation sequencing data of a defined microbial mock community. Scientific data, 3(1), 1-8.

Liu, L., Wang, Y., Che, Y., Chen, Y., Xia, Y., Luo, R., ... & Zhang, T. (2020). High-quality bacterial genomes of a partial-nitritation/anammox system by an iterative hybrid assembly method. Microbiome, 8, 1-17.
DOI: 10.5281/zenodo.8434266
title: Flowtigs datasets

description: This dataset was compiled using data from the following publications:

Shafranskaya, D., Kale, V., Finn, R., Lapidus, A. L., Korobeynikov, A., & Prjibelski, A. D. (2022). MetaGT: A pipeline for de novo assembly of metatranscriptomes with the aid of metagenomic data. Frontiers in Microbiology, 13, 981458.

Singer, E., Andreopoulos, B., Bowers, R. M., Lee, J., Deshpande, S., Chiniquy, J., ... & Woyke, T. (2016). Next generation sequencing data of a defined microbial mock community. Scientific data, 3(1), 1-8.

Liu, L., Wang, Y., Che, Y., Chen, Y., Xia, Y., Luo, R., ... & Zhang, T. (2020). High-quality bacterial genomes of a partial-nitritation/anammox system by an iterative hybrid assembly method. Microbiome, 8, 1-17.