cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17876/plate/dr.3/envelopes/204_50091
title: Digital object identifier (DOI) for the envelope 50091 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50093
title: Digital object identifier (DOI) for the envelope 50093 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50095
title: Digital object identifier (DOI) for the envelope 50095 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50098
title: Digital object identifier (DOI) for the envelope 50098 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50100
title: Digital object identifier (DOI) for the envelope 50100 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50102
title: Digital object identifier (DOI) for the envelope 50102 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50105
title: Digital object identifier (DOI) for the envelope 50105 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50107
title: Digital object identifier (DOI) for the envelope 50107 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50109
title: Digital object identifier (DOI) for the envelope 50109 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50112
title: Digital object identifier (DOI) for the envelope 50112 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50114
title: Digital object identifier (DOI) for the envelope 50114 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50116
title: Digital object identifier (DOI) for the envelope 50116 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50119
title: Digital object identifier (DOI) for the envelope 50119 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50121
title: Digital object identifier (DOI) for the envelope 50121 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50123
title: Digital object identifier (DOI) for the envelope 50123 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50126
title: Digital object identifier (DOI) for the envelope 50126 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50128
title: Digital object identifier (DOI) for the envelope 50128 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50130
title: Digital object identifier (DOI) for the envelope 50130 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50133
title: Digital object identifier (DOI) for the envelope 50133 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50135
title: Digital object identifier (DOI) for the envelope 50135 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50137
title: Digital object identifier (DOI) for the envelope 50137 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50140
title: Digital object identifier (DOI) for the envelope 50140 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50142
title: Digital object identifier (DOI) for the envelope 50142 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50144
title: Digital object identifier (DOI) for the envelope 50144 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50147
title: Digital object identifier (DOI) for the envelope 50147 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50149
title: Digital object identifier (DOI) for the envelope 50149 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50151
title: Digital object identifier (DOI) for the envelope 50151 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50154
title: Digital object identifier (DOI) for the envelope 50154 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50160
title: Digital object identifier (DOI) for the envelope 50160 in archive 204 from the APPLAUSE DR3
DOI: 10.5281/zenodo.8268102
title: PLO(SC)²: Plots and Scripts for scRNA-seq analysis

description: <strong>Availability</strong> The PLOSC-project is available from https://github.com/mjoppich/PLOSC . The sequencing data (h5-files) were taken from: Pekayvaz K, Leunig A, Kaiser R, Joppich M, Brambs S, Janjic A, et al. Protective immune trajectories in early<br> viral containment of non-pneumonic SARS-CoV-2 infection. Nature communications. 2022 Feb;13(1):1018.<br> Available from: https://www.nature.com/articles/s41467-022-28508-0. <strong>Background</strong><br> scRNA-seq analysis has become a standard technique to study biological systems.<br> With decreasing costs for scRNA-seq experiments, these also become increasingly complex.<br> While the typical scRNA-seq analysis frameworks provide functionalities for the analysis of even such data sets, the required steps to follow for such experiments become complicated.<br> Moreover, default plots are not suitable to provide specific insight into such complex data sets, and should be enhanced, such that camera-ready fully-interpretable plots are provided. <strong>Results</strong><br> We thus describe here a collection of plotting and analysis scripts for use in Seurat-based scRNA-seq data analyses.<br> We first provide a collection of script blocks which allows for an easy basic analysis of scRNA-seq from Seurat object creation, filtering, and over data set integration in less than 10 steps.<br> Subsequently, we provide code blocks for the easy differential analysis of the obtained data sets, including visualizations.<br> Finally, several visualizations enhancing the functionalities of scRNA-seq analysis frameworks are presented, such as the enhanced Heatmap and DotPlot.<br> These, particularly, allow the user to specify how the shown values should be scaled, allowing the creation of condition-wise plots. <strong>Conclusions</strong><br> With the PLO(SC)² framework the data analysis of scRNA-seq experiments becomes more stream-lined, and visualizations for interpreting complex datasets are provided.<br> The PLO(SC)² scripts are available from GitHub, including a notebook showing how PLO(SC)² is applied on the use-case data presented here. This way, fellow researchers can directly apply the methods on their data.
DOI: 10.5281/zenodo.8268103
title: PLO(SC)²: Plots and Scripts for scRNA-seq analysis

description: <strong>Availability</strong> The PLOSC-project is available from https://github.com/mjoppich/PLOSC . The sequencing data (h5-files) were taken from: Pekayvaz K, Leunig A, Kaiser R, Joppich M, Brambs S, Janjic A, et al. Protective immune trajectories in early<br> viral containment of non-pneumonic SARS-CoV-2 infection. Nature communications. 2022 Feb;13(1):1018.<br> Available from: https://www.nature.com/articles/s41467-022-28508-0. <strong>Background</strong><br> scRNA-seq analysis has become a standard technique to study biological systems.<br> With decreasing costs for scRNA-seq experiments, these also become increasingly complex.<br> While the typical scRNA-seq analysis frameworks provide functionalities for the analysis of even such data sets, the required steps to follow for such experiments become complicated.<br> Moreover, default plots are not suitable to provide specific insight into such complex data sets, and should be enhanced, such that camera-ready fully-interpretable plots are provided. <strong>Results</strong><br> We thus describe here a collection of plotting and analysis scripts for use in Seurat-based scRNA-seq data analyses.<br> We first provide a collection of script blocks which allows for an easy basic analysis of scRNA-seq from Seurat object creation, filtering, and over data set integration in less than 10 steps.<br> Subsequently, we provide code blocks for the easy differential analysis of the obtained data sets, including visualizations.<br> Finally, several visualizations enhancing the functionalities of scRNA-seq analysis frameworks are presented, such as the enhanced Heatmap and DotPlot.<br> These, particularly, allow the user to specify how the shown values should be scaled, allowing the creation of condition-wise plots. <strong>Conclusions</strong><br> With the PLO(SC)² framework the data analysis of scRNA-seq experiments becomes more stream-lined, and visualizations for interpreting complex datasets are provided.<br> The PLO(SC)² scripts are available from GitHub, including a notebook showing how PLO(SC)² is applied on the use-case data presented here. This way, fellow researchers can directly apply the methods on their data.
DOI: 10.17876/plate/dr.3/envelopes/204_50162
title: Digital object identifier (DOI) for the envelope 50162 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50165
title: Digital object identifier (DOI) for the envelope 50165 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50167
title: Digital object identifier (DOI) for the envelope 50167 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50169
title: Digital object identifier (DOI) for the envelope 50169 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50172
title: Digital object identifier (DOI) for the envelope 50172 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50174
title: Digital object identifier (DOI) for the envelope 50174 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50176
title: Digital object identifier (DOI) for the envelope 50176 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50179
title: Digital object identifier (DOI) for the envelope 50179 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50181
title: Digital object identifier (DOI) for the envelope 50181 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50183
title: Digital object identifier (DOI) for the envelope 50183 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50186
title: Digital object identifier (DOI) for the envelope 50186 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50188
title: Digital object identifier (DOI) for the envelope 50188 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50190
title: Digital object identifier (DOI) for the envelope 50190 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50193
title: Digital object identifier (DOI) for the envelope 50193 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50195
title: Digital object identifier (DOI) for the envelope 50195 in archive 204 from the APPLAUSE DR3
DOI: 10.5517/ccdc.csd.cc261grh
title: CCDC 2027206: Experimental Crystal Structure Determination

description: Related Article: Harmeet Bhoday, Audrey Schuman, Steven P. Kelley, Rainer Glaser|2020|CSD Communication|||
description: Related Article: Harmeet Bhoday, Kaidi Yang, Steven P. Kelley, Rainer Glaser|2023|CrystEngComm|25|4638|doi:10.1039/D3CE00676J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17876/plate/dr.3/envelopes/204_50197
title: Digital object identifier (DOI) for the envelope 50197 in archive 204 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/204_50200
title: Digital object identifier (DOI) for the envelope 50200 in archive 204 from the APPLAUSE DR3
DOI: 10.5517/ccdc.csd.cc297px5
title: CCDC 2122567: Experimental Crystal Structure Determination

description: Related Article: Noriyuki Uchida, Yunosuke Ryu, Yuichiro Takagi, Ken Yoshizawa, Kotono Suzuki, Yasutaka Anraku, Itsuki Ajioka, Naofumi Shimokawa, Masahiro Takagi, Norihisa Hoshino, Tomoyuki Akutagawa, Teruhiko Matsubara, Toshinori Sato, Yuji Higuchi, Hiroaki Ito, Masamune Morita, Takahiro Muraoka|2023|J.Am.Chem.Soc.|145|6210|doi:10.1021/jacs.2c12348
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc297q1b
title: CCDC 2122571: Experimental Crystal Structure Determination

description: Related Article: Noriyuki Uchida, Yunosuke Ryu, Yuichiro Takagi, Ken Yoshizawa, Kotono Suzuki, Yasutaka Anraku, Itsuki Ajioka, Naofumi Shimokawa, Masahiro Takagi, Norihisa Hoshino, Tomoyuki Akutagawa, Teruhiko Matsubara, Toshinori Sato, Yuji Higuchi, Hiroaki Ito, Masamune Morita, Takahiro Muraoka|2023|J.Am.Chem.Soc.|145|6210|doi:10.1021/jacs.2c12348
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17876/plate/dr.3/envelopes/204_50202
title: Digital object identifier (DOI) for the envelope 50202 in archive 204 from the APPLAUSE DR3
DOI: 10.5517/ccdc.csd.cc2dmqxp
title: CCDC 2223503: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmqyq
title: CCDC 2223504: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmqzr
title: CCDC 2223505: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17876/plate/dr.3/envelopes/204_50204
title: Digital object identifier (DOI) for the envelope 50204 in archive 204 from the APPLAUSE DR3
DOI: 10.5517/ccdc.csd.cc2dmr0t
title: CCDC 2223506: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmr1v
title: CCDC 2223507: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17876/plate/dr.3/envelopes/204_50207
title: Digital object identifier (DOI) for the envelope 50207 in archive 204 from the APPLAUSE DR3
DOI: 10.5517/ccdc.csd.cc2dmr2w
title: CCDC 2223508: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmr3x
title: CCDC 2223509: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmr4y
title: CCDC 2223510: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmr5z
title: CCDC 2223511: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17876/plate/dr.3/envelopes/204_50209
title: Digital object identifier (DOI) for the envelope 50209 in archive 204 from the APPLAUSE DR3
DOI: 10.5517/ccdc.csd.cc2dmr60
title: CCDC 2223512: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmr71
title: CCDC 2223513: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmr82
title: CCDC 2223514: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmr93
title: CCDC 2223515: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dmrb4
title: CCDC 2223516: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17876/plate/dr.3/envelopes/204_50211
title: Digital object identifier (DOI) for the envelope 50211 in archive 204 from the APPLAUSE DR3
DOI: 10.5517/ccdc.csd.cc2dmrc5
title: CCDC 2223517: Experimental Crystal Structure Determination

description: Related Article: Matthew L. Brown, Thomas E. Karpiuk, Daniel B. Leznoff|2023|CrystEngComm|25|4658|doi:10.1039/D3CE00583F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17876/plate/dr.3/envelopes/204_50214
title: Digital object identifier (DOI) for the envelope 50214 in archive 204 from the APPLAUSE DR3