cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7392503
title: Selection of scale can reverse the importance of stochastic controls on community assembly

description: Reconciling the long-standing debate on the importance of niche-related and neutral factors on community assembly, recent research suggests that both deterministic and stochastic processes operate simultaneously along a continuum in many biogeographical systems. In particular, stochastic processes seem to lose importance under stressful conditions, which results in the increasing influence of deterministic counterparts. In this paper, I show that, at local scales, this stochasticity–stress relationship can be reversed along the environmental stress gradients within a salt marsh: stochasticity manifested under harshness. Here, low-lying, more stressful sites contained all of the plant species of the local pool (i.e. a greater chance of ecological drift), whereas high-elevation, less stressful sites exhibited reduced species richness due to competitive exclusion (i.e. a lower chance of ecological drift). I conclude that determining whether the importance of stochasticity in shaping community structure is greater under benign or harsh conditions depends on the scale of interest.
DOI: 10.7284/120138
title: Transmissometer data collected during research cruise OC1409C using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120139
title: TSG (Thermosalinograph) data collected during research cruise OC1409C using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120144
title: Anemometer data collected during research cruise OC1410A using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120142
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1410A using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120146
title: Fluorometer data collected during research cruise OC1410A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/117351
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1410A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120147
title: Gyrocompass data collected during research cruise OC1410A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392404
title: San Pablo Bay

description: The Delft3D modeling configuration and results for San Pablo Bay long-term morphological modeling. Attached also is the Delft3D FM model that was used to derive hydrodynamic boundary conditions. Also, a link is provided to the source of the measured historical bathymetry (USGS).
DOI: 10.6084/m9.figshare.7392383
title: Top 100 - 2013 - 2017 data collection

description: Data files for the 2013 to 2017 Altmetric Top 100 lists.
DOI: 10.7284/120149
title: Hygrometer data collected during research cruise OC1410A using a Vaisala HMT300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392383.v2
title: Top 100 - 2013 - 2017 data collection

description: Data files for the 2013 to 2017 Altmetric Top 100 lists.
DOI: 10.6084/m9.figshare.7392383.v1
title: Top 100 - 2013 - 2017 data collection

description: Data files for the 2013 to 2017 Top 100 lists.
DOI: 10.7284/120148
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1410A using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392323.v2
title: Hypno-Death-Experiences

description: Material related to the paper "Hypno-Death Experiences: death experiences during hypnotic life regressions"<br>HypnoDeath_Interviews: participants' descriptions of their death, reported during their sessions of life regression in hypnosis.
DOI: 10.7284/120150
title: Radiometer data collected during research cruise OC1410A using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392299
title: Supplementary Material for: Obstructive Sleep Apnoea in Children and Adolescents with Ehlers-Danlos Syndrome

description: <b><i>Background:</i></b> In Ehlers-Danlos syndrome (EDS), a group of monogenic disorders affecting connective tissues, obstructive sleep apnoea (OSA) is highly prevalent in adults. The prevalence of OSA in children with EDS is unknown. <b><i>Objectives:</i></b> This prospective cross-sectional study aimed at determining the prevalence of OSA in paediatric EDS patients. <b><i>Methods:</i></b> Children with EDS (<i>n</i> = 24) were recruited from the Children’s Hospital Zurich and matched to healthy controls. Participants completed home respiratory polygraphy and questionnaires (Sleep-Related Breathing Disorder Scale [SRBD], Epworth Sleepiness Scale [ESS], and Child Health Questionnaire [CHQ]). The American Academy of Sleep Medicine criteria were applied for OSA diagnosis (obstructive apnoea-hypopnoea index [oAHI] ≥1/h). Conditional logistic regression was used to compare the prevalence of OSA and to adjust for possible confounding. <b><i>Results:</i></b> OSA was found in 42% of paediatric EDS patients and in 13% of matched controls (OR = 4.5, 95% CI = 0.97–20.83, <i>p</i> = 0.054). The median oAHI was higher in EDS patients than in controls (0.77/h, IQR = 0.19–1.76, vs. 0.24/h, IQR = 0.0–0.60, <i>p</i> &lt; 0.001 adjusted for age, sex, and BMI <i>z</i>-score). EDS patients had lower scores in most CHQ scales and higher SRBD and ESS scores than controls (0.26, IQR = 0.1–0.35, vs. 0.07, IQR = 0–0.19, <i>p</i> = 0.004); 7 ± 4 vs. 5 ± 4, <i>p</i> = 0.033, respectively). <b><i>Conclusion:</i></b> OSA is a previously underestimated EDS-related complication increasing disease burden.
DOI: 10.7284/120151
title: Radiometer data collected during research cruise OC1410A using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392254
title: Scheun et al 2018 data.xlsx

description: Sungazer Dataset
DOI: 10.7284/120152
title: Rain Gauge data collected during research cruise OC1410A using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392254.v1
title: Scheun et al 2018 data.xlsx

description: Sungazer Dataset
DOI: 10.25375/uct.7392212
title: NeDICC - Identifiers for Everything

description: This presentation, created for the Network of Data and Information Curation Communities, focuses on the developing field of persistent, unique identifiers in the field of research. Alongside the mainstream adoption of identifiers for research objects, in the form of handles and Digital Object Identifiers (DOIs), various other forms of identifiers are also becoming widely used. Examples include identifiers for humans (such as ORCiD & ResearcherID), for projects (RAiD), for grants and for institutions. This presentation explores these various forms of identifiers and the developing field of persistent, unique identification, and provides further reading for those interested in pursuing the topic more deeply.<br>
DOI: 10.7284/120143
title: Singlebeam Echosounder data collected during research cruise OC1410A using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392206
title: Supplementary Material for: The Human Salivary Antimicrobial Peptide Profile according to the Oral Microbiota in Health, Periodontitis and Smoking

description: Antimicrobial peptides (AMPs) are a diverse family of peptides that defend the mucosal surfaces of the oral cavity and other locations. Many AMPs have multiple functions and properties that influence aspects of innate defense and colonization by microorganisms. The human oral cavity is home to the second-most diverse microbiome, and the health of the mouth is influenced by the presence of these bacteria as well as by extrinsic factors such as periodontitis and smoking. This study hypothesized that the AMP profile is different in the presence of extrinsic factors and that this would also be reflected in the bacteria present. The AMP profile was analyzed by quantitative selected-reaction-monitoring mass spectrometry analysis and 40 bacterial species were quantified by DNA-DNA hybridization in saliva donated by 41 individuals. Periodontal status was assessed through dental examination and smoking status through medical charting. Periodontal health (in nonsmokers) was associated with a higher abundance of ribonuclease 7, protachykinin 1, β-defensin 128, lipocalin 1, bactericidal permeability-increasing protein fold-containing family B member 3, and bone-marrow proteoglycan. Nonsmoking periodontal disease was associated with an abundance of neutrophil defensin 1 and cathelicidin. However, 7 AMPs were overabundant in periodontal disease in smokers: adrenomedullin, eosinophil peroxidase, 3 different histones, myeloperoxidase, and neutrophil defensin 1. There were no differentially abundant AMPs in smokers versus nonsmokers with periodontal health. Correlation network inference of healthy nonsmokers, healthy smokers, nonsmoking periodontitis, or smoking periodontitis donors demonstrated very different networks growing in complexity with increasing numbers of stressors. The study highlights the importance of the interaction between the oral cavity and its resident microbiota and how this may be influenced by periodontal disease and smoking.
DOI: 10.6084/m9.figshare.7392188
title: Tracheal volumes TLR

description: Tracheal volumes of Cacosceles newmannii adults and larvae
DOI: 10.7284/120145
title: Singlebeam Echosounder data collected during research cruise OC1410A using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392206.v1
title: Supplementary Material for: The Human Salivary Antimicrobial Peptide Profile according to the Oral Microbiota in Health, Periodontitis and Smoking

description: Antimicrobial peptides (AMPs) are a diverse family of peptides that defend the mucosal surfaces of the oral cavity and other locations. Many AMPs have multiple functions and properties that influence aspects of innate defense and colonization by microorganisms. The human oral cavity is home to the second-most diverse microbiome, and the health of the mouth is influenced by the presence of these bacteria as well as by extrinsic factors such as periodontitis and smoking. This study hypothesized that the AMP profile is different in the presence of extrinsic factors and that this would also be reflected in the bacteria present. The AMP profile was analyzed by quantitative selected-reaction-monitoring mass spectrometry analysis and 40 bacterial species were quantified by DNA-DNA hybridization in saliva donated by 41 individuals. Periodontal status was assessed through dental examination and smoking status through medical charting. Periodontal health (in nonsmokers) was associated with a higher abundance of ribonuclease 7, protachykinin 1, β-defensin 128, lipocalin 1, bactericidal permeability-increasing protein fold-containing family B member 3, and bone-marrow proteoglycan. Nonsmoking periodontal disease was associated with an abundance of neutrophil defensin 1 and cathelicidin. However, 7 AMPs were overabundant in periodontal disease in smokers: adrenomedullin, eosinophil peroxidase, 3 different histones, myeloperoxidase, and neutrophil defensin 1. There were no differentially abundant AMPs in smokers versus nonsmokers with periodontal health. Correlation network inference of healthy nonsmokers, healthy smokers, nonsmoking periodontitis, or smoking periodontitis donors demonstrated very different networks growing in complexity with increasing numbers of stressors. The study highlights the importance of the interaction between the oral cavity and its resident microbiota and how this may be influenced by periodontal disease and smoking.
DOI: 10.6084/m9.figshare.7392185
title: Untitled Item

description: RS book<br>
DOI: 10.6084/m9.figshare.7392185.v1
title: Untitled Item

description: RS book<br>
DOI: 10.7284/120153
title: Speedlog data collected during research cruise OC1410A using a Furuno DS-50 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392167
title: The transcriptome of the Asian tiger mosquito head

description: Heatmap of the sample-to-sample distances. The distance values were printed in the cells.Heatmap of the gene expression matrix.<br>Gene Ontology (GO) enrichment analysis of differentially expressed genes.<br>KEGG pathway annotation<br>
DOI: 10.7284/120141
title: Water Temperature data collected during research cruise OC1410A using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392170.v1
title: questionaair for children.pdf

description: Assessment chart for children that include, oral examinationdemographic data, nutrition habits and BMI
DOI: 10.7284/120154
title: Water Temperature data collected during research cruise OC1410A using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392155
title: Untreated depression and non-medical use of prescription pain relievers: findings from the National Survey on Drug Use and Health 2008-2014

description: <b>Objectives</b>: Despite growing concerns for non-medical use of prescription pain relievers (NMUPPRs), little is known about the role of comorbid, untreated depressive disorders. <b>Methods</b>: We examined past year rates of NMUPPRs and major depressive episode (MDE), using data between 2008 and 2014 from the National Survey on Drug Use and Health for both youths (12–17 years) and adults (18 or older). Prevalence estimates with 95% confidence intervals were computed. Stratified analyses and generalized linear models were run to examine the association between NMUPPRs and MDE, controlling for treatments received for mental health and/or substance misuse. In order to explore whether MDE effect might change by treatment received, a model with an interaction term including MDE and treatment was fit. <b>Results</b>: Among respondents, about 9% (youths) and 7% (adults) reported past year MDE and about 6% (youths), and 4% (adults) NMUPPRs. About 1.2% (youths) and 0.7% (adults) reported both MDE and NMUPPRs. Those with past year MDE were more likely to report NMUPPRs (RR, 95%CI: 2.60, 2.42–2.80, and 2.64, 2.47–2.82, for youths and adults). Considering the any treatment/MDE interaction on NMUPPRs, MDE risk ratio for subjects who received some treatment (youths: adjusted risk ratio (ARR) = 1.15; adults: ARR = 1.25) was about 70–80% as compared with their untreated counterpart (youths: ARR = 1.57; adults: ARR = 1.54). The likelihood of reporting NMUPPRs amongst respondents who did not receive any treatment was higher for those with past year MDE (main effect: youths ARR = 1.57, <i>p</i> p <b>Conclusion</b>: Unrecognized and untreated depressive disorders should be considered for prevention, treatment, and policy implications in order to tackle NMUPPRs epidemic.
DOI: 10.6084/m9.figshare.7392155.v1
title: Untreated depression and non-medical use of prescription pain relievers: findings from the National Survey on Drug Use and Health 2008-2014

description: <b>Objectives</b>: Despite growing concerns for non-medical use of prescription pain relievers (NMUPPRs), little is known about the role of comorbid, untreated depressive disorders. <b>Methods</b>: We examined past year rates of NMUPPRs and major depressive episode (MDE), using data between 2008 and 2014 from the National Survey on Drug Use and Health for both youths (12–17 years) and adults (18 or older). Prevalence estimates with 95% confidence intervals were computed. Stratified analyses and generalized linear models were run to examine the association between NMUPPRs and MDE, controlling for treatments received for mental health and/or substance misuse. In order to explore whether MDE effect might change by treatment received, a model with an interaction term including MDE and treatment was fit. <b>Results</b>: Among respondents, about 9% (youths) and 7% (adults) reported past year MDE and about 6% (youths), and 4% (adults) NMUPPRs. About 1.2% (youths) and 0.7% (adults) reported both MDE and NMUPPRs. Those with past year MDE were more likely to report NMUPPRs (RR, 95%CI: 2.60, 2.42–2.80, and 2.64, 2.47–2.82, for youths and adults). Considering the any treatment/MDE interaction on NMUPPRs, MDE risk ratio for subjects who received some treatment (youths: adjusted risk ratio (ARR) = 1.15; adults: ARR = 1.25) was about 70–80% as compared with their untreated counterpart (youths: ARR = 1.57; adults: ARR = 1.54). The likelihood of reporting NMUPPRs amongst respondents who did not receive any treatment was higher for those with past year MDE (main effect: youths ARR = 1.57, <i>p</i> p <b>Conclusion</b>: Unrecognized and untreated depressive disorders should be considered for prevention, treatment, and policy implications in order to tackle NMUPPRs epidemic.
DOI: 10.6084/m9.figshare.7392170.v2
title: questionnaire for children.pdf

description: Assessment chart for children that include, oral examinationdemographic data, nutrition habits and BMI
DOI: 10.7284/120155
title: Transmissometer data collected during research cruise OC1410A using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120156
title: TSG (Thermosalinograph) data collected during research cruise OC1410A using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120172
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1410B using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120161
title: Fluorometer data collected during research cruise OC1410B using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/117352
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1410B using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120162
title: Gyrocompass data collected during research cruise OC1410B using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120164
title: Hygrometer data collected during research cruise OC1410B using a Vaisala HMT300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120163
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1410B using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120165
title: Radiometer data collected during research cruise OC1410B using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120166
title: Radiometer data collected during research cruise OC1410B using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392035
title: Additional file 9: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S8. List of significantly differentially expressed genes between the DMSO and RG7388 treated BT159 GBM cells with corresponding Bonferroni-corrected P values and log-normalized fold change values. Negative values indicate genes that were expressed at a higher level in the DMSO treated cells. (XLSX 451Â kb)
DOI: 10.6084/m9.figshare.7392035.v1
title: Additional file 9: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S8. List of significantly differentially expressed genes between the DMSO and RG7388 treated BT159 GBM cells with corresponding Bonferroni-corrected P values and log-normalized fold change values. Negative values indicate genes that were expressed at a higher level in the DMSO treated cells. (XLSX 451Â kb)
DOI: 10.6084/m9.figshare.7392026
title: Additional file 8: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S7. Gene set enrichment report for the ranked gene list presented in Additional fileÂ 7: Table S6. Enrichments were generated using the fgsea tool in R. Only gene sets with a false discovery rate (FDR) value less than 0.1 are included. (XLSX 17Â kb)
DOI: 10.7284/120167
title: Rain Gauge data collected during research cruise OC1410B using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392026.v1
title: Additional file 8: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S7. Gene set enrichment report for the ranked gene list presented in Additional fileÂ 7: Table S6. Enrichments were generated using the fgsea tool in R. Only gene sets with a false discovery rate (FDR) value less than 0.1 are included. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.7392017
title: Additional file 7: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S6. CD8+ T cell gene list ranked by log-normalized fold change in gene expression between the 24 and 48Â h activation time points. Negative values indicate genes expressed at a higher level in the 48Â h time point. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.7392017.v1
title: Additional file 7: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S6. CD8+ T cell gene list ranked by log-normalized fold change in gene expression between the 24 and 48Â h activation time points. Negative values indicate genes expressed at a higher level in the 48Â h time point. (XLSX 43Â kb)
DOI: 10.7284/120168
title: Speedlog data collected during research cruise OC1410B using a Furuno DS-50 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition