cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7781918.v1
title: Additional file 1 of Quantitative assessment of cerebellar ataxia, through automated limb functional tests

description: Data Analysis using signal parameters in page 5, Section: Data Analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7781921.v1
title: Additional file 2 of Quantitative assessment of cerebellar ataxia, through automated limb functional tests

description: Pearson correlation values and P-values of extracted features in page 5, Section: Data Analysis. (XLSX 13.5 kb)
DOI: 10.6084/m9.figshare.7781855
title: Additional file 2: of The evolution of gene regulatory networks controlling Arabidopsis thaliana L. trichome development

description: Table S2: Table contains the following sheets: Number of ortologous genes - This sheet contains information on the number of orthologous genes for each gene from the gene network in the species research. Evolutionary characteristics of GRN nodes - This sheet contains information on duplication events in different evolutionary lines for each gene from the gene network. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.7781846
title: Additional file 1: of The evolution of gene regulatory networks controlling Arabidopsis thaliana L. trichome development

description: Table S1: Table contains the following sheets: GRN_statistics - this sheet contains information on the number of nodes and edges the network. GO_enricment - this sheet contains information about the GO enrichment of all nodes from the network (according to AgriGO, the date of appeal is 11/07/2018). GO_terms_associated_GRN_nodes - this sheet contains information about the terms assigned to each node from the network (according to TAIR, the date of appeal is 11/07/2018). GO terms of GRN clusters - This sheet contains information about which term belongs to which cluster of the gene network. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.7781855.v1
title: Additional file 2: of The evolution of gene regulatory networks controlling Arabidopsis thaliana L. trichome development

description: Table S2: Table contains the following sheets: Number of ortologous genes - This sheet contains information on the number of orthologous genes for each gene from the gene network in the species research. Evolutionary characteristics of GRN nodes - This sheet contains information on duplication events in different evolutionary lines for each gene from the gene network. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.7781846.v1
title: Additional file 1: of The evolution of gene regulatory networks controlling Arabidopsis thaliana L. trichome development

description: Table S1: Table contains the following sheets: GRN_statistics - this sheet contains information on the number of nodes and edges the network. GO_enricment - this sheet contains information about the GO enrichment of all nodes from the network (according to AgriGO, the date of appeal is 11/07/2018). GO_terms_associated_GRN_nodes - this sheet contains information about the terms assigned to each node from the network (according to TAIR, the date of appeal is 11/07/2018). GO terms of GRN clusters - This sheet contains information about which term belongs to which cluster of the gene network. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.7781834
title: MOESM6 of On the length, weight and GC content of the human genome

description: Additional file 6: Table S5. Genomic, mRNA and transcriptomic GC contents per chromosome in human Down Syndrome (DS) acute megakaryoblastic leukemia (AMKL) blasts and euploid megakaryoblasts (MK) conditions. Genomic, mRNA and transcriptomic GC contents per chromosome in human Down Syndrome (DS) acute megakaryoblastic leukemia (AMKL) blasts and euploid megakaryoblasts (MK) conditions obtained as described in detail in Additional file 1: Additional Methods file.
DOI: 10.6084/m9.figshare.7781834.v1
title: MOESM6 of On the length, weight and GC content of the human genome

description: Additional file 6: Table S5. Genomic, mRNA and transcriptomic GC contents per chromosome in human Down Syndrome (DS) acute megakaryoblastic leukemia (AMKL) blasts and euploid megakaryoblasts (MK) conditions. Genomic, mRNA and transcriptomic GC contents per chromosome in human Down Syndrome (DS) acute megakaryoblastic leukemia (AMKL) blasts and euploid megakaryoblasts (MK) conditions obtained as described in detail in Additional file 1: Additional Methods file.
DOI: 10.6084/m9.figshare.7781801
title: MOESM3 of On the length, weight and GC content of the human genome

description: Additional file 3: Table S2. Nucleotide counts in the 24 human chromosomes and estimation of uncertain bases, based on GRCh37.p13. Nucleotide counts for the 24 human chromosomes and estimation of uncertain bases necessary for the genome length and weight calculations and for the GC content analysis, based on the previous human genome assembly, obtained as described in detail in Additional file 1: Additional Methods file.
DOI: 10.6084/m9.figshare.7781795
title: MOESM2 of On the length, weight and GC content of the human genome

description: Additional file 2: Table S1. Nucleotide counts in the 24 human chromosomes and estimation of uncertain bases, based on GRCh38.p10. Nucleotide counts for the 24 human chromosomes and estimation of uncertain bases necessary for the genome length and weight calculations and for the GC content analysis, based on the most recent human genome assembly, obtained as described in detail in Additional file 1: Additional Methods file.
DOI: 10.6084/m9.figshare.7781801.v1
title: MOESM3 of On the length, weight and GC content of the human genome

description: Additional file 3: Table S2. Nucleotide counts in the 24 human chromosomes and estimation of uncertain bases, based on GRCh37.p13. Nucleotide counts for the 24 human chromosomes and estimation of uncertain bases necessary for the genome length and weight calculations and for the GC content analysis, based on the previous human genome assembly, obtained as described in detail in Additional file 1: Additional Methods file.
DOI: 10.6084/m9.figshare.7781795.v1
title: MOESM2 of On the length, weight and GC content of the human genome

description: Additional file 2: Table S1. Nucleotide counts in the 24 human chromosomes and estimation of uncertain bases, based on GRCh38.p10. Nucleotide counts for the 24 human chromosomes and estimation of uncertain bases necessary for the genome length and weight calculations and for the GC content analysis, based on the most recent human genome assembly, obtained as described in detail in Additional file 1: Additional Methods file.
DOI: 10.6084/m9.figshare.7781777
title: Dataset for MMS

description: This dataset includes raw c.elegans membrane and nucleus stack images. Segmentation results from 3DMMS are also included. For more details, please consider referring our paper "<b>3DMMS: Robust 3D Membrane Morphological Segmentation of C. elegans Embryo</b>" (https://doi.org/10.1186/s12859-019-2720-x<i> BMC Bio</i>).
DOI: 10.6084/m9.figshare.7781066
title: Data of transcriptome, realtime PCR, and strength of muscle of old rats

description: This study aimed to test the effects of exercise training and resveratrol feeding on the skeletal muscle function and transcriptome of the old rats. The male SD rats aged 25 months were divided into the control group (OC), the daily exercise training group (OE), and the resveratrol feeding group (OR). After 6 weeks of intervention, the body mass, grip strength, and gastrocnemius muscle mass were determined, and the muscle samples were analyzed by transcriptome sequencing. Eight selected genes (Prkaa-2, FOXO3, IGF-1, TRIM67, IL-6, MGMT, and SCN5a) were verified by quantitative real-time PCR.
DOI: 10.6084/m9.figshare.7781024
title: Temporal effectiveness of interventions to improve medication adherence: a network meta-analysis

description: Dataset used for the PLOS One accepted article "Temporal effectiveness of interventions to improve medication adherence: a network meta-analysis." NMA used to compare effectiveness of interventions aimed at improved medication adherence through a composite measurement including pill count data, self-report, and electronic measurements.
DOI: 10.6084/m9.figshare.7781024.v1
title: Temporal effectiveness of interventions to improve medication adherence: a network meta-analysis

description: Dataset used for the PLOS One accepted article "Temporal effectiveness of interventions to improve medication adherence: a network meta-analysis." NMA used to compare effectiveness of interventions aimed at improved medication adherence through a composite measurement including pill count data, self-report, and electronic measurements.
DOI: 10.6084/m9.figshare.7781021
title: Datensatz_#memyselfandI.xlsx

description: Content Analysis of Instagram Posts of German Lifestyle Influencer
DOI: 10.6084/m9.figshare.7781021.v1
title: Datensatz_#memyselfandI.xlsx

description: Content Analysis of Instagram Posts of German Lifestyle Influencer
DOI: 10.6084/m9.figshare.7781015
title: Dataset for: Beta band oscillatory deficits during working memory encoding in adolescents with attention deficit hyperactive disorder

description: Attention-Deficit Hyperactivity Disorder (ADHD) is a neurobehavioural disorder, characterized by symptoms of inattention and/or hyperactivity/impulsivity, in addition to various cognitive deficits, including working memory impairments. This pathology arises from a complex constellation of genetic, structural and neurotransmission abnormalities, which give rise to the aberrant electrophysiological patterns evident in patients with ADHD. Among such, findings have consistently provided support in favour of weaker power across the beta frequency range. Evidence has also emerged that beta rhythmic decrements are linked to working memory encoding. The catecholaminergic modulation of both working memory and beta oscillations may suggest that the link between the two might be rooted at the neurotransmission level. Studies have consistently shown that ADHD involves significant catecholaminergic dysregulation, which is also supported by other clinical studies that demonstrate stimulant-induced amelioration of ADHD symptomology. In the current study, we explore the possible ways that might relate ADHD, working memory, beta rhythms and catecholaminergic signalling altogether by investigating the integrity of encoding-relevant electroencephalographic beta rhythms in medication-naïve and stimulant-medicated adolescent patients. The aberrant parietal and frontal encoding-related beta rhythm revealed in the ADHD patients together with a WM deficit as observed herein was reversed by MPH in the latter case but not with regards to the beta rhythm. This finding per se raises the issue of the role played by beta rhythms in the WM deficits associated with ADHD.
DOI: 10.6084/m9.figshare.7781015.v1
title: Dataset for: Beta band oscillatory deficits during working memory encoding in adolescents with attention deficit hyperactive disorder

description: Attention-Deficit Hyperactivity Disorder (ADHD) is a neurobehavioural disorder, characterized by symptoms of inattention and/or hyperactivity/impulsivity, in addition to various cognitive deficits, including working memory impairments. This pathology arises from a complex constellation of genetic, structural and neurotransmission abnormalities, which give rise to the aberrant electrophysiological patterns evident in patients with ADHD. Among such, findings have consistently provided support in favour of weaker power across the beta frequency range. Evidence has also emerged that beta rhythmic decrements are linked to working memory encoding. The catecholaminergic modulation of both working memory and beta oscillations may suggest that the link between the two might be rooted at the neurotransmission level. Studies have consistently shown that ADHD involves significant catecholaminergic dysregulation, which is also supported by other clinical studies that demonstrate stimulant-induced amelioration of ADHD symptomology. In the current study, we explore the possible ways that might relate ADHD, working memory, beta rhythms and catecholaminergic signalling altogether by investigating the integrity of encoding-relevant electroencephalographic beta rhythms in medication-naïve and stimulant-medicated adolescent patients. The aberrant parietal and frontal encoding-related beta rhythm revealed in the ADHD patients together with a WM deficit as observed herein was reversed by MPH in the latter case but not with regards to the beta rhythm. This finding per se raises the issue of the role played by beta rhythms in the WM deficits associated with ADHD.
DOI: 10.6084/m9.figshare.7780940
title: Custom protein databases

description: Custom databases in 12 human tissues.
DOI: 10.6084/m9.figshare.7780940.v2
title: Custom protein databases

description: Custom databases in 12 human tissues.
DOI: 10.6084/m9.figshare.7780952
title: Kim_Supplemental_Table1.docx

description: List of differentially regulated genes in α-GCGR vs control antibody treated human islets
DOI: 10.6084/m9.figshare.7780952.v1
title: Kim_Supplemental_Table1.docx

description: List of differentially regulated genes in α-GCGR vs control antibody treated human islets
DOI: 10.6084/m9.figshare.7780640.v1
title: Scaled von Mises-Fisher distributions and regression models for paleomagnetic directional data

description: We propose a new distribution for analysing paleomagnetic directional data that is a novel transformation of the von Mises-Fisher distribution. The new distribution has ellipse-like symmetry, as does the Kent distribution; however, unlike the Kent distribution the normalising constant in the new density is easy to compute and estimation of the shape parameters is straightforward. To accommodate outliers, the model also incorporates an additional shape parameter which controls the tail-weight of the distribution. We also develop a general regression model framework that allows both the mean direction and the shape parameters of the error distribution to depend on covariates. The proposed regression procedure is shown to be equivariant with respect to the choice of coordinate system for the directional response. To illustrate, we analyse paleomagnetic directional data from the GEOMAGIA50.v3 database (Brown et al. 2015). We predict the mean direction at various geological time points and show that there is significant heteroscedasticity present. It is envisaged that the regression structures and error distribution proposed here will also prove useful when covariate information is available with (i) other types of directional response data; and (ii) square-root transformed compositional data of general dimension.
DOI: 10.6084/m9.figshare.7780637.v1
title: Design, Identification, and Sensitivity Analysis for Patient Preference Trials

description: Social and medical scientists are often concerned that the external validity of experimental results may be compromised because of heterogeneous treatment effects. If a treatment has different effects on those who would choose to take it and those who would not, the average treatment effect estimated in a standard randomized controlled trial (RCT) may give a misleading picture of its impact outside of the study sample. Patient preference trials (PPTs), where participants’ preferences over treatment options are incorporated in the study design, provide a possible solution. In this paper, we provide a systematic analysis of PPTs based on the potential outcomes framework of causal inference. We propose a general design for PPTs with multi-valued treatments, where participants state their preferred treatments and are then randomized into either a standard RCT or a self-selection condition. We derive nonparametric sharp bounds on the average causal effects among each choice-based subpopulation of participants under the proposed design. We also propose a sensitivity analysis for the violation of the key ignorability assumption sufficient for identifying the target causal quantity. The proposed design and methodology are illustrated with an original study of partisan news media and its behavioral impact. (194 words)
DOI: 10.6084/m9.figshare.7778255
title: Dataset of gait and inertial sensors

description: The dataset consists of all the data of the 22 healthy subjects plus one subject with foot drop. The data are stored in ASCII (text) format and can be downloaded separately or as a single compressed file. The dataset has three types of contents: data of the measured signals (data files), data of the gait events (event files), and metadata about the subjects (metadata file). The task performed by each subject was to walk barefoot six times at each of three self-paced speeds (comfortable, slow, and fast) on a 40-m long and 2-m wide walkway, without curves, with a flat and rigid surface (trials 1, 3, and 5 were in one direction, and trials 2, 4, and 6 were in the opposite direction). The order of the speeds was randomized among subjects. Each trial lasted from 30 s to 60 s. In addition, one trial was acquired with the subject standing upright and as still as possible for 10 s, for a potential calibration of the sensors. Data collection for each subject was performed in a single session, which lasted 40 min on average.<br>Two companion Jupyter Notebooks (available at https://github.com/BMClab/datasets/tree/master/GEDS) presents the programming code to generate such analyses and other examples.<br><br>
DOI: 10.6084/m9.figshare.7778255.v2
title: Dataset of gait and inertial sensors

description: The dataset consists of all the data of the 22 healthy subjects plus one subject with foot drop. The data are stored in ASCII (text) format and can be downloaded separately or as a single compressed file. The dataset has three types of contents: data of the measured signals (data files), data of the gait events (event files), and metadata about the subjects (metadata file). The task performed by each subject was to walk barefoot six times at each of three self-paced speeds (comfortable, slow, and fast) on a 40-m long and 2-m wide walkway, without curves, with a flat and rigid surface (trials 1, 3, and 5 were in one direction, and trials 2, 4, and 6 were in the opposite direction). The order of the speeds was randomized among subjects. Each trial lasted from 30 s to 60 s. In addition, one trial was acquired with the subject standing upright and as still as possible for 10 s, for a potential calibration of the sensors. Data collection for each subject was performed in a single session,which lasted 40 min on average.
DOI: 10.6084/m9.figshare.7777301.v1
title: HARmonized grids of Critical Infrastructures in Europe (HARCI-EU)

description: <b>Critical infrastructures</b> (CIs) are assets, systems, or parts thereof that are essential for the maintenance of socioeconomic functions, health, safety and well-being of people. The exposure of CIs to natural and man-made hazards poses a risk to the economy and society. The spatial distribution of CIs and their economic value are a prerequisite for quantifying risk and planning suitable protection and adaptation measures. However, the incompleteness and inconsistency of existing information on CIs hamper their integration into large-scale risk frameworks.<br><b>The ‘HARmonized grids of Critical Infrastructures in Europe’ (HARCI-EU) dataset represents major CIs in the transport, energy, industry and social sectors expressed in sector-specific, economically-relevant units.</b> The HARCI-EU dataset contains 22 grids in GeoTIFF format with a resolution of 1 Km<sup>2</sup>. The grids use the ETRS89 coordinate system and the Lambert Azimuthal Equal Area map projection. Cell values range between zero (i.e. absence of infrastructure) and a sector-specific maximum value. Raster cells outside the area of interest have null values. The files are best visualized and manipulated using appropriate Geographical Information System software.<br>The HARCI-EU grids were produced by integrating geospatial and statistical data from multiple sources. Correlation analysis performed against independent metrics corroborates the approach showing average Pearson coefficients ranging between 0.61 and 0.95 across the sectors. <b>HARCI-EU provides a comprehensive and consistent mapping of current CIs that can serve as exposure information for large-scale risk assessments in Europe.</b><br>
DOI: 10.6084/m9.figshare.7777301.v2
title: HARmonized grids of Critical Infrastructures in EUrope (HARCI-EU)

description: <b>Critical infrastructures</b> (CIs) are assets, systems, or parts thereof that are essential for the maintenance of socioeconomic functions, health, safety and well-being of people. The exposure of CIs to natural and man-made hazards poses a risk to the economy and society. The spatial distribution of CIs and their economic value are a prerequisite for quantifying risk and planning suitable protection and adaptation measures. However, the incompleteness and inconsistency of existing information on CIs hamper their integration into large-scale risk frameworks.<br><b>The ‘HARmonized grids of Critical Infrastructures in Europe’ (HARCI-EU) dataset represents major CIs in the transport, energy, industry and social sectors expressed in sector-specific, economically-relevant units.</b> The HARCI-EU dataset contains 22 grids in GeoTIFF format with a resolution of 1 Km<sup>2</sup>. The grids use the ETRS89 coordinate system and the Lambert Azimuthal Equal Area map projection. Cell values range between zero (i.e. absence of infrastructure) and a CI-specific maximum value. Raster cells outside the area of interest have null values. The files are best visualized and manipulated using appropriate Geographical Information System software.<br>The HARCI-EU grids were produced by integrating geospatial and statistical data from multiple sources. Correlation analysis performed against independent metrics corroborates the approach showing average Pearson coefficients ranging between 0.61 and 0.95 across the sectors. <b>HARCI-EU provides a consistent mapping of CIs in key sectors that can serve as exposure information for large-scale risk assessments in Europe.</b><br>
DOI: 10.6084/m9.figshare.7777256.v1
title: concept_drawings_popgen

description: Concept drawings covering common concepts of population genetics for teaching.<br>
DOI: 10.6084/m9.figshare.7777301
title: HARmonized grids of Critical Infrastructures in EUrope (HARCI-EU)

description: <b>Critical infrastructures</b> (CIs) are assets, systems, or parts thereof that are essential for the maintenance of socioeconomic functions, health, safety and well-being of people. The exposure of CIs to natural and man-made hazards poses a risk to the economy and society. The spatial distribution of CIs and their economic value are a prerequisite for quantifying risk and planning suitable protection and adaptation measures. However, the incompleteness and inconsistency of existing information on CIs hamper their integration into large-scale risk frameworks.<br><b>The ‘HARmonized grids of Critical Infrastructures in Europe’ (HARCI-EU) dataset represents major CIs in the transport, energy, industry and social sectors expressed in sector-specific, economically-relevant units.</b> The HARCI-EU dataset contains 22 grids in GeoTIFF format with a resolution of 1 km<sup>2</sup>. The grids use the ETRS89 coordinate system and the Lambert Azimuthal Equal Area map projection. Cell values range between zero (i.e. absence of infrastructure) and a CI-specific maximum value. Raster cells outside the area of interest have null values. The files are best visualized and manipulated using appropriate Geographical Information System software.<br>The HARCI-EU grids were produced by integrating geospatial and statistical data from multiple sources. Correlation analysis performed against independent metrics corroborates the approach showing average Pearson coefficients ranging between 0.61 and 0.95 across the sectors. <b>HARCI-EU provides a consistent mapping of CIs in key sectors that can serve as exposure information for large-scale risk assessments in Europe.</b><br>
DOI: 10.6084/m9.figshare.7777256.v2
title: concept_drawings_popgen

description: Concept drawings covering common concepts of population genetics for teaching.<br>