cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/v2aez-6t648
title: Hyphomonas session9 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-03-07</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-60/rawdata/</p>09mar07a_36c_063.mrc,  Tilt Series (Pixel Size 0.632 nm), 553.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-60/rawdata/09mar07a_36c_063.mrc"
        > <i class="download icon"></i> Download </a></p>

        09mar07a_36c_063_full.rec,  Reconstruction (Pixel Size 1.264 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-60/3dimage_6987/09mar07a_36c_063_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/v224q-sdn07
title: B. subtilis AD3268

description: Raw data files of B. subtilis AD3268
description: <strong>Tilt Series Date:</strong> 2011-12-09</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3268, ponA null, Alp7A</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-09-20/rawdata/</p>32680020.mrc,  Tilt Series (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-09-20/rawdata/32680020.mrc"
        > <i class="download icon"></i> Download </a></p>

        32680020_full.rec,  Reconstruction (Pixel Size 3.8 nm), 929.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-09-20/3dimage_16098/32680020_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/c5e12-g5w24
title: Skinny E. coli DS664

description: Raw data files of Skinny E. coli DS664
description: <strong>Tilt Series Date:</strong> 2009-11-23</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD, RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> Cells provided by Daisuke Shiomi (BW25113 yhdE_deletion mreB-A125V). Data colleted by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase in L Broth</p>
<strong>Sample Preparation:</strong> Quantifoil R2/1 or R2/2, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-58/rawdata/</p>09nov23a_DS664_058.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-58/rawdata/09nov23a_DS664_058.mrc"
        > <i class="download icon"></i> Download </a></p>

        09nov23a_DS664_058_part.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-58/3dimage_9741/09nov23a_DS664_058_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/y8qkt-p3z73
title: HeLa CHMP4A+VPS4DN

description: HeLa cells transfected with CHMP4A & VPS4DN constructs
description: <strong>Tilt Series Date:</strong> 2011-02-09</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HeLa cells</p>
<strong>Strain:</strong> ATCC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Constructs provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with polyfect</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-02-09-2/rawdata/</p>11feb09b_C50-4d_002.st,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        11feb09b_C50-4d_002_full.rec,  Reconstruction (Pixel Size 2.0 nm), 408.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/30qyw-cwz74
title: HeLa CHMP4A+VPS4DN

description: HeLa cells transfected with CHMP4A & VPS4DN constructs
description: <strong>Tilt Series Date:</strong> 2011-02-09</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HeLa cells</p>
<strong>Strain:</strong> ATCC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Constructs provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with polyfect</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-02-09-13/rawdata/</p>11feb09b_C50-4d_033.st,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-02-09-13/rawdata/11feb09b_C50-4d_033.st"
        > <i class="download icon"></i> Download </a></p>

        11feb09b_C50-4d_033_full.rec,  Reconstruction (Pixel Size 2.0 nm), 427.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.he922b
title: Occurrence Download

description: A dataset containing 12073 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fragaria vesca",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12073 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045785-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/msypn-rqb56
title: PAOI delta aer2

description: Pseudomonas aeruginosa delta aer2
description: <strong>Tilt Series Date:</strong> 2014-10-15</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Kylie Watts</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Streak on LB plates and incubate overnight at 37°C- Inoculate 5 mL MOPS Minimal Media Limited Nitrogen from plate and grow at 30°C for ~24 hours</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-10-15-5/rawdata/</p>PAO1DeltaAer2MC0005_mcorr.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-10-15-5/rawdata/PAO1DeltaAer2MC0005_mcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        PAO1DeltaAer2MC0005_mcorr_full.rec,  Reconstruction (Pixel Size 1.28 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-10-15-5/3dimage_47120/PAO1DeltaAer2MC0005_mcorr_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.4hsjy8
title: Occurrence Download

description: A dataset containing 74600 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia verbenaca"
 ]
}

 The dataset includes 74600 records from 823 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045741-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16947805
title: "A Hybrid ML-MILP Framework for the Optimal Integration of Photovoltaic and Battery Systems in Manufacturing Industries" Dataset

description: This dataset accompanies the paper “A Hybrid ML–MILP Framework for the Optimal Integration of Photovoltaic and Battery Systems in Manufacturing Industries.” It contains all data required to replicate the case studies presented in the manuscript and to enable further experimentation by the community.

The data package contains load demand, electricity price and pv production forecasts. Reproducing the results should yield the same capacity sizing, dispatch schedules, and techno-economic metrics reported in the paper.
DOI: 10.5281/zenodo.16947806
title: "A Hybrid ML-MILP Framework for the Optimal Integration of Photovoltaic and Battery Systems in Manufacturing Industries" Dataset

description: This dataset accompanies the paper “A Hybrid ML–MILP Framework for the Optimal Integration of Photovoltaic and Battery Systems in Manufacturing Industries.” It contains all data required to replicate the case studies presented in the manuscript and to enable further experimentation by the community.

The data package contains load demand, electricity price and pv production forecasts. Reproducing the results should yield the same capacity sizing, dispatch schedules, and techno-economic metrics reported in the paper.
DOI: 10.22002/tn8gn-mg524
title: HUVECs-pNLGFP-VPS4DN

description: HUVECs cells were first transfected with VPS4DN construct using Nucleofector Kit. 4.5 h post-transfection cells were infected with pNLGFP-VSVG by spinoculation and then frozen 24 h post infection.  Sample# C68
description: <strong>Tilt Series Date:</strong> 2011-04-14</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> VPS4DN construct provided by Wes Sundquist. pNL4GFP provirus construct from Irvin Chen (UCLA). Cells transfected, infected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids, transfected and then infected</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-04-14-13/rawdata/</p>11apr14b_C68-2b_029.st,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        11apr14b_C68-2b_029_full.rec,  Reconstruction (Pixel Size 2.0 nm), 704.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/m8p18-z0437
title: Pdj 121509 MP34

description: Prosthecobacter dejongeii, 09dec18a_MP34_Pdj_052,
description: <strong>Tilt Series Date:</strong> 2009-12-18</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter dejongeii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2009-12-18-49_slicer4764.jpg: flat vesicles mpa2009-12-18-49_slicer4765.jpg: ribosome exclusion zone REZ .  nucleoid .  outer protein
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-12-18-49/rawdata/</p>09dec18a_MP34_Pdj_052.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09dec18a_MP34_Pdj_052_part.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vhty6-5vx25
title: Calubactor EB session22 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-08-07</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Zhuo/Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, EB 0.02mg/ml overnight 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-08-07-23/rawdata/</p>09aug07a_b266c_031.mrc,  Tilt Series (Pixel Size 0.774 nm), 998.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09aug07a_b266c_031_part.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6wj5m-14598
title: Wild type control

description: Raw data files of Wild type control
description: <strong>Tilt Series Date:</strong> 2009-08-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, PEACH</p>
<strong>Collaborators and Roles:</strong> Experiments were done by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase NA1000 cells.</p>
<strong>Sample Preparation:</strong> 10 nm gold </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-1/rawdata/</p>09aug01a_noaddctl1_001.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09aug01a_noaddctl1_001_full.rec,  Reconstruction (Pixel Size 2.4 nm), 367.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.57992/nmrxiv.p125
title: CORDYPYRIDONES E-J: ANTIBIOFILM 2-PYRIDONE ALKALOIDS FROM THE NEMATODE ANTAGONISITC FUNGUS LABURNICOLA NEMATOPHILA

description: CORDYPYRIDONES E-J: ANTIBIOFILM 2-PYRIDONE ALKALOIDS FROM THE NEMATODE ANTAGONISITC FUNGUS LABURNICOLA NEMATOPHILA
DOI: 10.57992/nmrxiv.p125.s1270
title: Compound 2

description: Cordypyridone F
DOI: 10.57992/nmrxiv.p125.s1270.d5479
title: Compound 2[100002]

description: 100002
DOI: 10.57992/nmrxiv.p125.s1270.d5480
title: Compound 2[13C]

description: 13C
DOI: 10.22002/ygcyx-dq750
title: GFP-MreB fusion methanol control

description: Raw data files of GFP-MreB fusion methanol control
description: <strong>Tilt Series Date:</strong> 2009-08-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, REACH</p>
<strong>Collaborators and Roles:</strong> Experiments were done by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The GFP-MreB-expressing NA1000 cells were cultured to exponential phase and treated with methanol as a control.</p>
<strong>Sample Preparation:</strong> 10 nm gold.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-94/rawdata/</p>09aug01a_methanolgfmr1_094.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09aug01a_methanolgfmr1_094_full.rec,  Reconstruction (Pixel Size 2.4 nm), 629.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.57992/nmrxiv.p125.s1270.d5481
title: Compound 2[1H]

description: 1H
DOI: 10.57992/nmrxiv.p125.s1270.d5482
title: Compound 2[1H_2]

description: 1H_2
DOI: 10.57992/nmrxiv.p125.s1270.d5483
title: Compound 2[COSY]

description: COSY
DOI: 10.57992/nmrxiv.p125.s1270.d5484
title: Compound 2[HMBC]

description: HMBC
DOI: 10.57992/nmrxiv.p125.s1270.d5485
title: Compound 2[HSQC]

description: HSQC
DOI: 10.57992/nmrxiv.p125.s1270.d5486
title: Compound 2[ROESY]

description: ROESY
DOI: 10.57992/nmrxiv.p125.s1271
title: Compound 5

description: Cordypyridone I
DOI: 10.57992/nmrxiv.p125.s1271.d5487
title: Compound 5[11]

description: 11
DOI: 10.57992/nmrxiv.p125.s1271.d5488
title: Compound 5[15]

description: 15