cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13567916
title: 2D random dot motion discrimination task

description: Behavioural data for the <b>2D random dot motion discrimination task</b>.<br>The experiment consists of two parts:1) Parallel staircase procedure2) 6 blocks of random dots task on two axes<br><br>This data has been collected via Prolific recruitment portal with jsPsych and anonymised (eg. profil ids have been removed).<br><br>The folder contains two summary files:<b>summary_a20.csv</b> and <b>summary_a45.csv</b><br>for two angles of the experiment: 20 and 45 degrees between the axes.Each summary file assigns some data gathered about participants<br><br>All the remaining files are encodes in the following way:<br><b>a_.csv</b>For example: <b>a45_44.csv</b> is the data for participants number 44 for condition with 45 degrees angle.Each file contains a table that in rows contains the information about the trial. The utils functions that help you read this data you might find in the repository below.In general the most important columns are: <b>rt</b> (with response time), <b>stimuls</b> (with information displayed on the screen), <b>correct</b> (that encodes whether the right option was chosen), <b>coherence</b> (that informs about the coherence of the dots per axis), <b>stair_coh1</b> and <b>stair_coh2</b> (with values of convergent coherences after staircase procedure).<br><br>The datails of the experiment and data analysis can be found: <i>https://github.com/dokato/2drdk</i>.<br>
DOI: 10.15468/rhzm5z
title: Notes on the genus Astenus Dejean, 1833 in the Mediterranean and adjacent regions. A new species from Turkey, seven new synonyms, and additional records (Coleoptera: Staphylinidae: Paederinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Anlaş, Sinan (2020): Notes on the genus Astenus Dejean, 1833 in the Mediterranean and adjacent regions. A new species from Turkey, seven new synonyms, and additional records (Coleoptera: Staphylinidae: Paederinae). Zootaxa 4869 (2): 251-263, DOI: https://doi.org/10.11646/zootaxa.4869.2.5
DOI: 10.6084/m9.figshare.13567982.v1
title: Molecular Study of Showing results for Torque Teno virus in Acute Gastroenteritis

description: The data of the present study clarifies high prevalence of TTV in stool samples from adults with acute gastroenteritis
DOI: 10.6084/m9.figshare.13567982
title: Molecular Study of Showing results for Torque Teno virus in Acute Gastroenteritis

description: The data of the present study clarifies high prevalence of TTV in stool samples from adults with acute gastroenteritis
DOI: 10.6084/m9.figshare.13567967
title: Spreadsheet_Volobaev_et_al.sta

description: We assessed the effects of short- (without cryopreservation) and long-term (with cryopreservation) storage of DMEM-cultivated human peripheral blood leukocytes (HPBLs) and a human lung fibroblast cell line (FLECH-104) on comet assay results.
DOI: 10.5281/zenodo.4350202
title: Phylogenomics of Gesneriaceae using targeted capture of nuclear genes

description: Gesneriaceae (ca. 3400 species) is a pantropical plant family with a wide range of growth form and floral morphology that are associated with repeated adaptations to different environments and pollinators. Although Gesneriaceae systematics has been largely improved by the use of Sanger sequencing data, our understanding of the evolutionary history of the group is still far from complete due to the limited number of informative characters provided by this type of data. To overcome this limitation, we developed here a Gesneriaceae-specific gene capture kit targeting 830 single-copy loci (776,754 bp in total), including 279 genes from the Universal Angiosperm-353 kit. With an average of 557,600 reads and 87.8% gene recovery, our target capture was successful across the family Gesneriaceae and also in other families of Lamiales. From our bait set, we selected the most informative 418 loci to resolve phylogenetic relationships across the entire Gesneriaceae family using maximum likelihood and coalescent-based methods. Upon testing the phylogenetic performance of our baits on 78 taxa representing 20 out of 24 subtribes within the family, we showed that our data provided high support for the phylogenetic relationships among the major lineages, and were able to provide high resolution within more recent radiations. Overall, the molecular resources we developed here open new perspectives for the study of Gesneriaceae phylogeny at different taxonomical levels and the identification of the factors underlying the diversification of this plant group.
DOI: 10.15468/m2c9v2
title: New early Pleistocene Alligator (Eusuchia: Crocodylia) from Florida bridges a gap in Alligator evolution

description: This dataset contains the digitized treatments in Plazi based on the original journal article Stout, Jeremy B. (2020): New early Pleistocene Alligator (Eusuchia: Crocodylia) from Florida bridges a gap in Alligator evolution. Zootaxa 4868 (1): 41-60, DOI: https://doi.org/10.11646/zootaxa.4868.1.3
DOI: 10.6084/m9.figshare.7799075
title: Sediment provenance, sediment-dispersal systems, and major arc-magmatic events recorded in the Mexican foreland basin, North-Central and Northeastern Mexico

description: The Late Cretaceous-Paleogene Mexican foreland basin (MFB), defined herein, represents the southern continuation of the late Mesozoic Cordilleran foreland basin. Sandstone petrography, new detrital-zircon (DZ) U-Pb geochronology, and paleocurrent data indicate that much of the sedimentary fill of the basin was derived from an active Late Cretaceous-Paleogene magmatic arc, termed here the Mexican Cordilleran arc, on the western continental margin of Mexico. The oldest known strata of the proximal foreland basin in the Mesa Central consist of Cenomanian-Turonian turbidites. Sampled sandstones are compositional volcanic litharenites with abundant neovolcanic grains and a dominant, approximately syndepositional DZ age group ranging ~98–92 Ma that records a major magmatic event in the Mexican Cordilleran arc. Santonian-Campanian strata in the distal MFB consist of carbonate pelagites with abundant interbedded tuffs and tuffaceous sandstones. Represented by the Caracol and San Felipe formations deposited in the forebulge and back-bulge depozones, respectively, these strata form an arcuate outcrop belt ~700 km in length. DZ ages ranging ~85–74 Ma in the arc-derived tuffaceous strata record a second prominent magmatic event. Two principal transport mechanisms delivered volcanogenic sediment to the MFB from multiple, simultaneously active arc sources during Late Cretaceous time: (1) Cenomanian-Turonian east-directed transverse fluvial systems transported volcanic-lithic sand rich in young zircon grains; and (2) airborne ash clouds transported Santonian-Campanian zircon grains to the distal foreland basin in prevailing Late Cretaceous northwesterly winds. Axial transport of sediment derived from active arc sources, Proterozoic basement and derivative sedimentary rocks in northwestern Mexico, in addition to transverse transport from the thrust orogen itself, represents a younger sediment-routing system, modified by advance of the foreland fold-thrust belt, to the Maastrichtian-Paleogene foreland of northeastern Mexico.
DOI: 10.6084/m9.figshare.7799075.v1
title: Sediment provenance, sediment-dispersal systems, and major arc-magmatic events recorded in the Mexican foreland basin, North-Central and Northeastern Mexico

description: The Late Cretaceous-Paleogene Mexican foreland basin (MFB), defined herein, represents the southern continuation of the late Mesozoic Cordilleran foreland basin. Sandstone petrography, new detrital-zircon (DZ) U-Pb geochronology, and paleocurrent data indicate that much of the sedimentary fill of the basin was derived from an active Late Cretaceous-Paleogene magmatic arc, termed here the Mexican Cordilleran arc, on the western continental margin of Mexico. The oldest known strata of the proximal foreland basin in the Mesa Central consist of Cenomanian-Turonian turbidites. Sampled sandstones are compositional volcanic litharenites with abundant neovolcanic grains and a dominant, approximately syndepositional DZ age group ranging ~98–92 Ma that records a major magmatic event in the Mexican Cordilleran arc. Santonian-Campanian strata in the distal MFB consist of carbonate pelagites with abundant interbedded tuffs and tuffaceous sandstones. Represented by the Caracol and San Felipe formations deposited in the forebulge and back-bulge depozones, respectively, these strata form an arcuate outcrop belt ~700 km in length. DZ ages ranging ~85–74 Ma in the arc-derived tuffaceous strata record a second prominent magmatic event. Two principal transport mechanisms delivered volcanogenic sediment to the MFB from multiple, simultaneously active arc sources during Late Cretaceous time: (1) Cenomanian-Turonian east-directed transverse fluvial systems transported volcanic-lithic sand rich in young zircon grains; and (2) airborne ash clouds transported Santonian-Campanian zircon grains to the distal foreland basin in prevailing Late Cretaceous northwesterly winds. Axial transport of sediment derived from active arc sources, Proterozoic basement and derivative sedimentary rocks in northwestern Mexico, in addition to transverse transport from the thrust orogen itself, represents a younger sediment-routing system, modified by advance of the foreland fold-thrust belt, to the Maastrichtian-Paleogene foreland of northeastern Mexico.
DOI: 10.6084/m9.figshare.7814132
title: The role of dispersed ash in orbital-scale time-series studies of explosive arc volcanism: insights from IODP Hole U1437B, Northwest Pacific Ocean

description: Tephra fallout beds in marine sediments provide chronologically precise and highly resolved records of volcanism at time scales relevant to Quaternary climate cycles. While the record of discrete (visible) thin tephra beds is readily accessible, the significance of the dispersed (invisible) tephra record remains unclear. Here we evaluate the role of dispersed tephra for orbital-scale volcanic time variations in the Quaternary (&lt;1.2 Ma) carbonate mud of IODP Hole U1437B (Northwest Pacific). The carbonate mud contains cyclic series of discrete fallout tephra beds from the oceanic Izu Bonin (~85% of tephra beds) and the continental Japan (~15%) volcanic arcs, respectively. Our results show the inorganic aluminosilicate (lithogenic) fraction is a mixture of dispersed Izu Bonin and Japan ash, and Asian dust. The time distribution of the Izu Bonin ash with its distinct composition appears to confirm and enhance the cyclic time variation of the discrete ash beds at Hole U1437B. Dispersed Japan ash resembles Asian dust in trace elements and is only distinguishable in Sr-Nd isotope space. Collectively, our results confirm the existence of periodic, orbital-scale fluctuations of arc volcanic frequency. Orbital-scale time variations of marine ash may be best established by series of discrete marine ash beds, yet the concomitant dispersed ash flux must also be recorded in order to understand the total flux of arc volcanic ash into the ocean basins and thus the role of the volcanism-climate link.
DOI: 10.6084/m9.figshare.7814132.v1
title: The role of dispersed ash in orbital-scale time-series studies of explosive arc volcanism: insights from IODP Hole U1437B, Northwest Pacific Ocean

description: Tephra fallout beds in marine sediments provide chronologically precise and highly resolved records of volcanism at time scales relevant to Quaternary climate cycles. While the record of discrete (visible) thin tephra beds is readily accessible, the significance of the dispersed (invisible) tephra record remains unclear. Here we evaluate the role of dispersed tephra for orbital-scale volcanic time variations in the Quaternary (&lt;1.2 Ma) carbonate mud of IODP Hole U1437B (Northwest Pacific). The carbonate mud contains cyclic series of discrete fallout tephra beds from the oceanic Izu Bonin (~85% of tephra beds) and the continental Japan (~15%) volcanic arcs, respectively. Our results show the inorganic aluminosilicate (lithogenic) fraction is a mixture of dispersed Izu Bonin and Japan ash, and Asian dust. The time distribution of the Izu Bonin ash with its distinct composition appears to confirm and enhance the cyclic time variation of the discrete ash beds at Hole U1437B. Dispersed Japan ash resembles Asian dust in trace elements and is only distinguishable in Sr-Nd isotope space. Collectively, our results confirm the existence of periodic, orbital-scale fluctuations of arc volcanic frequency. Orbital-scale time variations of marine ash may be best established by series of discrete marine ash beds, yet the concomitant dispersed ash flux must also be recorded in order to understand the total flux of arc volcanic ash into the ocean basins and thus the role of the volcanism-climate link.
DOI: 10.5281/zenodo.4436683
title: Phylogenomics of Gesneriaceae using targeted capture of nuclear genes

description: Gesneriaceae (ca. 3400 species) is a pantropical plant family with a wide range of growth form and floral morphology that are associated with repeated adaptations to different environments and pollinators. Although Gesneriaceae systematics has been largely improved by the use of Sanger sequencing data, our understanding of the evolutionary history of the group is still far from complete due to the limited number of informative characters provided by this type of data. To overcome this limitation, we developed here a Gesneriaceae-specific gene capture kit targeting 830 single-copy loci (776,754 bp in total), including 279 genes from the Universal Angiosperm-353 kit. With an average of 557,600 reads and 87.8% gene recovery, our target capture was successful across the family Gesneriaceae and also in other families of Lamiales. From our bait set, we selected the most informative 418 loci to resolve phylogenetic relationships across the entire Gesneriaceae family using maximum likelihood and coalescent-based methods. Upon testing the phylogenetic performance of our baits on 78 taxa representing 20 out of 24 subtribes within the family, we showed that our data provided high support for the phylogenetic relationships among the major lineages, and were able to provide high resolution within more recent radiations. Overall, the molecular resources we developed here open new perspectives for the study of Gesneriaceae phylogeny at different taxonomical levels and the identification of the factors underlying the diversification of this plant group.
DOI: 10.5281/zenodo.4350201
title: Phylogenomics of Gesneriaceae using targeted capture of nuclear genes

description: Gesneriaceae (ca. 3400 species) is a pantropical plant family with a wide range of growth form and floral morphology that are associated with repeated adaptations to different environments and pollinators. Although Gesneriaceae systematics has been largely improved by the use of Sanger sequencing data, our understanding of the evolutionary history of the group is still far from complete due to the limited number of informative characters provided by this type of data. To overcome this limitation, we developed here a Gesneriaceae-specific gene capture kit targeting 830 single-copy loci (776,754 bp in total), including 279 genes from the Universal Angiosperm-353 kit. With an average of 557,600 reads and 87.8% gene recovery, our target capture was successful across the family Gesneriaceae and also in other families of Lamiales. From our bait set, we selected the most informative 418 loci to resolve phylogenetic relationships across the entire Gesneriaceae family using maximum likelihood and coalescent-based methods. Upon testing the phylogenetic performance of our baits on 78 taxa representing 20 out of 24 subtribes within the family, we showed that our data provided high support for the phylogenetic relationships among the major lineages, and were able to provide high resolution within more recent radiations. Overall, the molecular resources we developed here open new perspectives for the study of Gesneriaceae phylogeny at different taxonomical levels and the identification of the factors underlying the diversification of this plant group.
DOI: 10.6084/m9.figshare.13553651
title: Digitized heavy rainfall advisories 2015-2019

description: The text-based Heavy rainfall advisories issued at Kenya Meteorological Department have been digitized.<br>The following data has been extracted from each:<br>- Issue date- Valid date (the days which the forecast pertains to)- Lead time (day between issue date and valid date)- Indicated probability range- Rainfall threshold used in the advisory
DOI: 10.6084/m9.figshare.13553651.v2
title: Digitized heavy rainfall advisories 2015-2019

description: The text-based Heavy rainfall advisories issued at Kenya Meteorological Department have been digitized.<br>The following data has been extracted from each:<br>- Issue date- Valid date (the days which the forecast pertains to)- Lead time (day between issue date and valid date)- Indicated probability range- Rainfall threshold used in the advisory
DOI: 10.6084/m9.figshare.13553651.v1
title: Digitized heavy rainfall advisories 2015-2019

description: The text-based Heavy rainfall advisories issued at Kenya Meteorological Department have been digitized.<br>The following data has been extracted from each:<br>- Issue date- Valid date (the days which the forecast pertains to)- Lead time (day between issue date and valid date)- Indicated probability range- Rainfall threshold used in the advisory
DOI: 10.15468/kntyh2
title: first_glossophaginae_corrientes_argentina

description: We report the discovery of the nectarivorous bat, Glossophaga soricina,in Corrientes, Argentina, extending its known range and increasing the number of bat species recorded in this province to 32. An adult male was captured in Apipé Grande island in October 2019. This bat is considered Vulnerable in Argentina and needs urgent conservation action in order to avoid further threats.
DOI: 10.15468/lkj0mr
title: Checklist of Cyanobacteria of Greece (data)

description: This dataset includes a checklist of the cyanobacteria species found in Greece from 1956 to 2016
DOI: 10.15468/f75rp4
title: Revision of the French Polycirridae (Annelida, Terebelliformia), with descriptions of eight new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lavesque, Nicolas, Hutchings, Pat, Daffe, Guillemine, Londoño-Mesa, Mario H. (2020): Revision of the French Polycirridae (Annelida, Terebelliformia), with descriptions of eight new species. Zootaxa 4869 (2): 151-186, DOI: https://doi.org/10.11646/zootaxa.4869.2.1
DOI: 10.15468/cp5ww9
title: A new species of Miccolamia Bates, 1884 (Coleoptera: Cerambycidae: Lamiinae) from northeast India, with comments on related species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sreedevi, Kolla, Agossadou, Anette Houefa, Kumar, Umesh, Ghate, Hemant V. (2020): A new species of Miccolamia Bates, 1884 (Coleoptera: Cerambycidae: Lamiinae) from northeast India, with comments on related species. Zootaxa 4868 (2): 295-300, DOI: https://doi.org/10.11646/zootaxa.4868.2.9
DOI: 10.5287/bodleian:8jxpmjevo
title: Supporting Data - Revealing the Role of Fluoride-Rich Battery Electrode Interphases by Operando Transmission Electron Microscopy
DOI: 10.5281/zenodo.4436682
title: Replication R code and data for "Geometric morphometric investigation of craniofacial morphological change in domesticated silver foxes"

description: This repository holds various files and R code used in the publication of the manuscript entitled "Geometric morphometric investigation of craniofacial morphological change in domesticated silver foxes". Data files include: The 3D landmark coordinates of each individual specimen (Fox_data_Morphologika.txt), the linear measurement data associated with those foxes (fox_linear_volume_data.csv), and replication data measurements. The following files include the R code used to perform the analyses contained within the paper: 1_Procrustes_analysis - details the Geometric morphometrics analyses performed 2_linear_models - details the model specification for the GLS models employed in the paper 3_graph_code - contains R script for the creation of the graphs displayed in the paper 4_repeatability_script - contains R code that details the statistical calculations made with the repeatability measurements indicated above.
DOI: 10.5281/zenodo.4265223
title: Replication R code and data for "Geometric morphometric investigation of craniofacial morphological change in domesticated silver foxes"

description: This repository holds various files and R code used in the publication of the manuscript entitled "Geometric morphometric investigation of craniofacial morphological change in domesticated silver foxes". Data files include: The 3D landmark coordinates of each individual specimen (Fox_data_Morphologika.txt), the linear measurement data associated with those foxes (fox_linear_volume_data.csv), and replication data measurements. The following files include the R code used to perform the analyses contained within the paper: 1_Procrustes_analysis - details the Geometric morphometrics analyses performed 2_linear_models - details the model specification for the GLS models employed in the paper 3_graph_code - contains R script for the creation of the graphs displayed in the paper 4_repeatability_script - contains R code that details the statistical calculations made with the repeatability measurements indicated above.
DOI: 10.5281/zenodo.4436715
title: New genetic markers for Sapotaceae phylogenomics: more than 600 nuclear genes applicable from family to population levels

description: Some tropical plant families, such as the Sapotaceae, have a complex taxonomy, which can be resolved using Next Generation Sequencing (NGS). For most groups however, methodological protocols are still missing. Here we identified 531 monocopy genes and 227 Short tandem repeats (STR) markers and tested them on Sapotaceae using target capture and NGS. The probes were designed using two genome skimming samples from<em>Capurodendron delphinense</em> and <em>Bemangidia lowryi</em>, both from the Tseboneae tribe, as well as the published <em>Manilkara zapota</em> transcriptome from the Sapotoideae tribe. We combined our probes with 261 additional ones previously published and designed for the entire angiosperm group. On a total of 792 low-copy genes, 638 showed no signs of paralogy and were used to build a phylogeny of the family with 231 individuals from all main lineages. A highly supported topology was obtained at high taxonomic ranks but also at the species level. This phylogeny revealed the existence of more than 20 putative new species. Single nucleotide polymorphisms (SNPs) extracted from the 638 genes were able to distinguish lineages within a species complex and to highlight geographical structuration. STR were recovered efficiently for the species used as reference (<em>C. delphinense</em>) but the recovery rate decreased dramatically with the phylogenetic distance to the focal species. All together, the new loci will help reaching a sound taxonomic understanding of the family Sapotaceae for which many circumscriptions and relationships are still debated, at the species, genus and tribe levels.