cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30946098
title: Mitogenome characterization and phylogenetic analysis of <i>Phallus dongsun</i> (Phallaceae): an edible and medicinal fungus in the Phallaceae family

description: The mitogenome of <i>Phallus dongsun</i> comprises a circular DNA molecule of 59,243 bp with a GC It is a 59,243 bp circular DNA molecule with 25.74% GC content, containing 14 PCGs, 2 rRNAs, 25 tRNAs, and 15 introns. It features 19 SSRs and a codon bias toward A/T endings. All protein-coding genes show strong purifying selection (avg. Ka/Ks=0.049). Phylogenomic analysis reveals a well-supported clade with <i>P. indusiatus</i> and <i>P. echinovolvatus</i> as sisters. Incongruence with nuclear trees is attributed to past misidentification of Chinese specimens. This first complete mitogenome for <i>P. dongsun</i> provides a key genomic resource for future phylogenetic studies in <i>Phallus</i>.
DOI: 10.6084/m9.figshare.30946098.v1
title: Mitogenome characterization and phylogenetic analysis of <i>Phallus dongsun</i> (Phallaceae): an edible and medicinal fungus in the Phallaceae family

description: The mitogenome of <i>Phallus dongsun</i> comprises a circular DNA molecule of 59,243 bp with a GC It is a 59,243 bp circular DNA molecule with 25.74% GC content, containing 14 PCGs, 2 rRNAs, 25 tRNAs, and 15 introns. It features 19 SSRs and a codon bias toward A/T endings. All protein-coding genes show strong purifying selection (avg. Ka/Ks=0.049). Phylogenomic analysis reveals a well-supported clade with <i>P. indusiatus</i> and <i>P. echinovolvatus</i> as sisters. Incongruence with nuclear trees is attributed to past misidentification of Chinese specimens. This first complete mitogenome for <i>P. dongsun</i> provides a key genomic resource for future phylogenetic studies in <i>Phallus</i>.
DOI: 10.6084/m9.figshare.30971357
title: The complete mitochondrial genome and phylogenetic analysis of <i>Aoria bowringii</i> (Baly, 1860)

description: We sequenced and annotated the complete mitochondrial genome of <i>Aoria bowringii</i>. The circular mitogenome is 17,054 bp in length and exhibits a strong A + T bias, with nucleotide composition A 47.71%, T 30.63%, C 16.00%, and G 5.67%. It contains the typical set of 37 metazoan mitochondrial genes, including 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes, as well as a putative control region. A maximum-likelihood phylogenetic analysis based on 13 PCGs places <i>A. bowringii</i> as a highly supported sister species to its congener <i>Aoria nigripes</i>. This mitogenome provides a valuable molecular resource for future phylogenetic and population genetic studies of this insect pest.
DOI: 10.6084/m9.figshare.30971357.v1
title: The complete mitochondrial genome and phylogenetic analysis of <i>Aoria bowringii</i> (Baly, 1860)

description: We sequenced and annotated the complete mitochondrial genome of <i>Aoria bowringii</i>. The circular mitogenome is 17,054 bp in length and exhibits a strong A + T bias, with nucleotide composition A 47.71%, T 30.63%, C 16.00%, and G 5.67%. It contains the typical set of 37 metazoan mitochondrial genes, including 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes, as well as a putative control region. A maximum-likelihood phylogenetic analysis based on 13 PCGs places <i>A. bowringii</i> as a highly supported sister species to its congener <i>Aoria nigripes</i>. This mitogenome provides a valuable molecular resource for future phylogenetic and population genetic studies of this insect pest.
DOI: 10.6084/m9.figshare.30985549
title: Complete mitochondrial genome of the clearwing moth <i>Synanthedon namdoelegans</i> Kim, Kim and Choi, 2025 (Lepidoptera: Sesiidae)

description: The clearwing moth <i>Synanthedon namdoelegans</i> Kim, Kim and Choi, 2025 (Lepidoptera: Sesiidae) was newly discovered in South Korea in 2024. We sequenced 15,578 bp-long complete mitochondrial genome of the species. It contained the <i>trnQ–trnS2–trnM–trnI</i> arrangement at the A + T-rich region and <i>ND2</i> junction (the underline indicates counterclockwise direction) unique to tribe Synanthedonini. Phylogenetic analyses of 18 Cossoidea species supported the monophyly of each Synanthedonini and <i>Synanthedon</i>, and revealed a sister relationship between S. <i>namdoelegans</i> and <i>Synanthedon bicingulata</i> (Staudinger 1887). These data will be useful in taxonomic, molecular ecological, and pest management research.
DOI: 10.6084/m9.figshare.30985549.v1
title: Complete mitochondrial genome of the clearwing moth <i>Synanthedon namdoelegans</i> Kim, Kim and Choi, 2025 (Lepidoptera: Sesiidae)

description: The clearwing moth <i>Synanthedon namdoelegans</i> Kim, Kim and Choi, 2025 (Lepidoptera: Sesiidae) was newly discovered in South Korea in 2024. We sequenced 15,578 bp-long complete mitochondrial genome of the species. It contained the <i>trnQ–trnS2–trnM–trnI</i> arrangement at the A + T-rich region and <i>ND2</i> junction (the underline indicates counterclockwise direction) unique to tribe Synanthedonini. Phylogenetic analyses of 18 Cossoidea species supported the monophyly of each Synanthedonini and <i>Synanthedon</i>, and revealed a sister relationship between S. <i>namdoelegans</i> and <i>Synanthedon bicingulata</i> (Staudinger 1887). These data will be useful in taxonomic, molecular ecological, and pest management research.
DOI: 10.15468/dl.en29sf
title: Occurrence Download

description: A dataset containing 102368 records in GBIF matching the query:
SELECT
 '396' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 37.42857426825602
 AND decimalLatitude &lt;= 41.89415215079384
 AND decimalLongitude &gt;= -113.8874202948881
 AND decimalLongitude &lt;= -103.61541922929841
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 102368 records were derived from 305 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010452-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30985546
title: Characterization of the complete chloroplast genome of <i>Actinidia melliana</i> (Actinidiaceae)

description: <i>Actinidia melliana</i> is a unique <i>Actinidia</i> species whose genomic data is extremely lacking. In this study, we reported the complete chloroplast genome of <i>A. melliana</i> for the first time, which has a total length of 156,159 bp, consisting of a large single-copy (LSC) region of 90,525 bp, a small single-copy (SSC) region of 20,578 bp, and a pair of inverted repeat (IR) regions with 22,528 bp each. A total of 133 genes were annotated, including 84 protein-coding genes, 41 transfer RNA genes (tRNA) and 8 ribosomal RNA genes (rRNA). Phylogenetic analysis alongside 28 other species in the Actinidiaceae family revealed that <i>A. melliana</i> is most closely related to <i>A. cylindrica</i> var. <i>cylindrica</i>. This study provides new genetic resources for evolutionary studies of <i>Actinidia</i> and supports future efforts in species identification and conservation within the genus.
DOI: 10.6084/m9.figshare.30985546.v1
title: Characterization of the complete chloroplast genome of <i>Actinidia melliana</i> (Actinidiaceae)

description: <i>Actinidia melliana</i> is a unique <i>Actinidia</i> species whose genomic data is extremely lacking. In this study, we reported the complete chloroplast genome of <i>A. melliana</i> for the first time, which has a total length of 156,159 bp, consisting of a large single-copy (LSC) region of 90,525 bp, a small single-copy (SSC) region of 20,578 bp, and a pair of inverted repeat (IR) regions with 22,528 bp each. A total of 133 genes were annotated, including 84 protein-coding genes, 41 transfer RNA genes (tRNA) and 8 ribosomal RNA genes (rRNA). Phylogenetic analysis alongside 28 other species in the Actinidiaceae family revealed that <i>A. melliana</i> is most closely related to <i>A. cylindrica</i> var. <i>cylindrica</i>. This study provides new genetic resources for evolutionary studies of <i>Actinidia</i> and supports future efforts in species identification and conservation within the genus.
DOI: 10.6084/m9.figshare.30775404
title: Sequencing and analysis of the complete chloroplast genome of the traditional medicinal plant <i>Fraxinus chinensis</i> subsp. <i>rhynchophylla</i> (Oleaceae)

description: <i>Fraxinus chinensis</i> subsp.<i> rhynchophylla</i> is a traditional medicinal plant. Its chloroplast genome was sequenced, assembled, and analyzed in this study. The results showed that the complete chloroplast genome of<i> F. chinensis</i> subsp.<i> Rhynchophylla,</i> 155,784 bp in length, contains 133 annotated genes, including 88 protein-coding genes (PCGs), 8 rRNA genes, and 37 tRNA genes. Phylogenetic analysis revealed that this subspecies clusters with 14 other <i>Fraxinus</i> species, such as<i> Fraxinus sieboldiana</i> and<i> Fraxinus hupehensis</i>, with strong support values. These findings provide a valuable resource for further evolutionary studies, molecular identification, and medicinal applications of<i> F. chinensis</i> subsp.<i> rhynchophylla.</i>
DOI: 10.6084/m9.figshare.30775404.v1
title: Sequencing and analysis of the complete chloroplast genome of the traditional medicinal plant <i>Fraxinus chinensis</i> subsp. <i>rhynchophylla</i> (Oleaceae)

description: <i>Fraxinus chinensis</i> subsp.<i> rhynchophylla</i> is a traditional medicinal plant. Its chloroplast genome was sequenced, assembled, and analyzed in this study. The results showed that the complete chloroplast genome of<i> F. chinensis</i> subsp.<i> Rhynchophylla,</i> 155,784 bp in length, contains 133 annotated genes, including 88 protein-coding genes (PCGs), 8 rRNA genes, and 37 tRNA genes. Phylogenetic analysis revealed that this subspecies clusters with 14 other <i>Fraxinus</i> species, such as<i> Fraxinus sieboldiana</i> and<i> Fraxinus hupehensis</i>, with strong support values. These findings provide a valuable resource for further evolutionary studies, molecular identification, and medicinal applications of<i> F. chinensis</i> subsp.<i> rhynchophylla.</i>
DOI: 10.6084/m9.figshare.30985566
title: Complete mitochondrial genome of <i>Neochalcosia remota</i> (Walker, 1854) (Lepidoptera: Zygaenidae)

description: The Zygaenidae family comprises diurnal moths recognized for their bright coloration and chemical defenses. Despite its ecological and evolutionary significance, mitochondrial genome (mitogenome) data remain scarce. Here, we present the mitogenome of <i>Neochalcosia remota,</i> the first to be elucidated in members of the <i>Neochalcosia</i> genus, in the Chalcosiinae subfamily. The complete mitogenome is 15,246 bp and contains the standard set of 37 genes, with 13 protein-coding genes (PCGs), 22 tRNAs, and 2 rRNAs, as well as an A + T-rich region. An inverted translocation of the <i>trnE</i>-<i>trnS<sub>1</sub></i> block (underlined gene names indicate a counter-clockwise transcriptional direction), instead of the typical <i>trnS<sub>1</sub></i>-<i>trnE</i> arrangement in Lepidoptera, present in all Zygaenidae species, was also detected in <i>N. remota</i>. Phylogenetic analyses based on the 13 PCGs and two rRNAs in the Zygaenidae strongly supported the monophylies of this family and its subfamilies (Chalcosiinae, Procridinae, and Zygaeninae), placing <i>N. remota</i> as a sister taxon to <i>Eterusia aedea</i>. As a new contribution to the mitogenome database, the mitogenome of <i>N. remota</i> could provide valuable genetic data leading to a diverse taxonomic hierarchy in phylogenetic studies.
DOI: 10.6084/m9.figshare.30985566.v1
title: Complete mitochondrial genome of <i>Neochalcosia remota</i> (Walker, 1854) (Lepidoptera: Zygaenidae)

description: The Zygaenidae family comprises diurnal moths recognized for their bright coloration and chemical defenses. Despite its ecological and evolutionary significance, mitochondrial genome (mitogenome) data remain scarce. Here, we present the mitogenome of <i>Neochalcosia remota,</i> the first to be elucidated in members of the <i>Neochalcosia</i> genus, in the Chalcosiinae subfamily. The complete mitogenome is 15,246 bp and contains the standard set of 37 genes, with 13 protein-coding genes (PCGs), 22 tRNAs, and 2 rRNAs, as well as an A + T-rich region. An inverted translocation of the <i>trnE</i>-<i>trnS<sub>1</sub></i> block (underlined gene names indicate a counter-clockwise transcriptional direction), instead of the typical <i>trnS<sub>1</sub></i>-<i>trnE</i> arrangement in Lepidoptera, present in all Zygaenidae species, was also detected in <i>N. remota</i>. Phylogenetic analyses based on the 13 PCGs and two rRNAs in the Zygaenidae strongly supported the monophylies of this family and its subfamilies (Chalcosiinae, Procridinae, and Zygaeninae), placing <i>N. remota</i> as a sister taxon to <i>Eterusia aedea</i>. As a new contribution to the mitogenome database, the mitogenome of <i>N. remota</i> could provide valuable genetic data leading to a diverse taxonomic hierarchy in phylogenetic studies.
DOI: 10.6084/m9.figshare.30964534
title: Avatar Authenticated Metaverse Environment with Improved Key Management and Information Flow Control with Obfuscation

description: The metaverse, a virtual world that simulates reality, is developing quickly and is about to become widely incorporated into human existence in a number of areas, including healthcare, education, and transportation. Utilizing the core principles of traditional classroom training, its online counterpart offers increased flexibility, accessibility, inclusivity, and cost-efficiency. Advancements in technology and educational tools automate data collection, enabling precise assessment of knowledge, tailored learning experiences, and targeted faculty interventions to accommodate diverse learner needs. The onset of global technological advancements accelerated the adoption of virtual learning solutions, prompting a significant transformation in teaching methods. This paper proposes a novel avatar-authenticated metaverse environment, leveraging cloud computing benefits and incorporating techniques such as Improved Key Management (IKM), Enhanced Information Flow Control (EIFC), with an obfuscation process. The EIFC method, coupled with obfuscation, introduces the Red Fox-Adapted Tuna Swarm Optimization algorithm (RFATSO) to optimally choose an improved Blowfish key from a series of sub-keys in the improved Blowfish algorithm. Experimental evaluation against established techniques showcases the effectiveness of the proposed approach in revolutionizing educational practices.
DOI: 10.6084/m9.figshare.30964534.v1
title: Avatar Authenticated Metaverse Environment with Improved Key Management and Information Flow Control with Obfuscation

description: The metaverse, a virtual world that simulates reality, is developing quickly and is about to become widely incorporated into human existence in a number of areas, including healthcare, education, and transportation. Utilizing the core principles of traditional classroom training, its online counterpart offers increased flexibility, accessibility, inclusivity, and cost-efficiency. Advancements in technology and educational tools automate data collection, enabling precise assessment of knowledge, tailored learning experiences, and targeted faculty interventions to accommodate diverse learner needs. The onset of global technological advancements accelerated the adoption of virtual learning solutions, prompting a significant transformation in teaching methods. This paper proposes a novel avatar-authenticated metaverse environment, leveraging cloud computing benefits and incorporating techniques such as Improved Key Management (IKM), Enhanced Information Flow Control (EIFC), with an obfuscation process. The EIFC method, coupled with obfuscation, introduces the Red Fox-Adapted Tuna Swarm Optimization algorithm (RFATSO) to optimally choose an improved Blowfish key from a series of sub-keys in the improved Blowfish algorithm. Experimental evaluation against established techniques showcases the effectiveness of the proposed approach in revolutionizing educational practices.
DOI: 10.6084/m9.figshare.30940129
title: The complete chloroplast genome sequence of <i>Thaumatophyllum bipinnatifidum</i>

description: <i>Thaumatophyllum bipinnatifidum</i> is a perennial evergreen herb belonging to the family <i>Araceae</i> and genus <i>Thaumatophyllum</i>. Its chloroplast genome has a total length of 169,027 bp, comprising a large single-copy region of 94,617 bp, a small single-copy region of 22,544 bp, and two inverted repeat regions of 25,933 bp. The chloroplast genome consists of 132 RNA components, including 87 protein-coding genes, 37 transfer RNAs, and eight ribosomal RNAs. Phylogenetic analyses revealed that <i>T. bipinnatifidum</i> clusters closely with <i>Aglaonema</i> and <i>Zantedeschia.</i> These findings provide valuable data for assessing the genetic diversity, species identification, and evolution of <i>T. bipinnatifidum</i>.
DOI: 10.6084/m9.figshare.30940129.v1
title: The complete chloroplast genome sequence of <i>Thaumatophyllum bipinnatifidum</i>

description: <i>Thaumatophyllum bipinnatifidum</i> is a perennial evergreen herb belonging to the family <i>Araceae</i> and genus <i>Thaumatophyllum</i>. Its chloroplast genome has a total length of 169,027 bp, comprising a large single-copy region of 94,617 bp, a small single-copy region of 22,544 bp, and two inverted repeat regions of 25,933 bp. The chloroplast genome consists of 132 RNA components, including 87 protein-coding genes, 37 transfer RNAs, and eight ribosomal RNAs. Phylogenetic analyses revealed that <i>T. bipinnatifidum</i> clusters closely with <i>Aglaonema</i> and <i>Zantedeschia.</i> These findings provide valuable data for assessing the genetic diversity, species identification, and evolution of <i>T. bipinnatifidum</i>.
DOI: 10.6084/m9.figshare.30946470
title: The complete mitogenome of <i>Lyreidus stenops</i> Wood-Mason, 1887 (Decapoda: Raninidae) from the East China Sea

description: The frog crab <i>Lyreidus stenops</i> Wood-Mason, 1887 is primarily distributed in the East China Sea, South China Sea, and waters surrounding Japan and Korea. Its mitogenome (GenBank: PV437595) is 15,461 bp in length and comprises 13 PCGs, 2 rRNAs, 22 tRNAs, and one non-coding control region. Nucleotide composition analysis showed a high AT content (70.4%). Phylogenetic analysis grouped <i>L. stenops</i> with <i>Lyreidus tridentatus</i> and <i>Lyreidus brevifrons</i> in a monophyletic clade, with the latter two species exhibiting close evolutionary relationships. This mitogenome sequence enriches the genomic dataset for the species of <i>Lyreidus</i> and will aid in resolving evolutionary dynamics within Raninidae.
DOI: 10.6084/m9.figshare.30946470.v1
title: The complete mitogenome of <i>Lyreidus stenops</i> Wood-Mason, 1887 (Decapoda: Raninidae) from the East China Sea

description: The frog crab <i>Lyreidus stenops</i> Wood-Mason, 1887 is primarily distributed in the East China Sea, South China Sea, and waters surrounding Japan and Korea. Its mitogenome (GenBank: PV437595) is 15,461 bp in length and comprises 13 PCGs, 2 rRNAs, 22 tRNAs, and one non-coding control region. Nucleotide composition analysis showed a high AT content (70.4%). Phylogenetic analysis grouped <i>L. stenops</i> with <i>Lyreidus tridentatus</i> and <i>Lyreidus brevifrons</i> in a monophyletic clade, with the latter two species exhibiting close evolutionary relationships. This mitogenome sequence enriches the genomic dataset for the species of <i>Lyreidus</i> and will aid in resolving evolutionary dynamics within Raninidae.
DOI: 10.5281/zenodo.18365116
title: RAQAMLI PEDAGOGIKA VOSITALARIDAN FOYDALANGAN HOLDA MASOFAVIY TA'LIM JARAYONINI SAMARALI TASHKIL ETISH USULLARI

description: Zamonaviy ta'lim tizimida raqamli texnologiyalarning jadal rivojlanishi masofaviy ta'lim jarayonini tashkil etishda yangi imkoniyatlar va yo‘nalishlarni ochib bermoqda. Pandemiya davri butun dunyo bo‘ylab ta'lim muassasalarini onlayn ta'limga o‘tishga majbur etdi va bu jarayon raqamli pedagogika vositalarining ahamiyatini yanada oshirdi. Bugungi kunda masofaviy ta'limni samarali tashkil etish nafaqat texnologik vositalarni tanlash, balki ularni pedagogik jihatdan to‘g‘ri qo‘llash, o‘quvchilar bilan samarali muloqot o‘rnatish va ta'lim sifatini ta'minlash masalalarini ham o‘z ichiga oladi.
DOI: 10.5281/zenodo.18365117
title: RAQAMLI PEDAGOGIKA VOSITALARIDAN FOYDALANGAN HOLDA MASOFAVIY TA'LIM JARAYONINI SAMARALI TASHKIL ETISH USULLARI

description: Zamonaviy ta'lim tizimida raqamli texnologiyalarning jadal rivojlanishi masofaviy ta'lim jarayonini tashkil etishda yangi imkoniyatlar va yo‘nalishlarni ochib bermoqda. Pandemiya davri butun dunyo bo‘ylab ta'lim muassasalarini onlayn ta'limga o‘tishga majbur etdi va bu jarayon raqamli pedagogika vositalarining ahamiyatini yanada oshirdi. Bugungi kunda masofaviy ta'limni samarali tashkil etish nafaqat texnologik vositalarni tanlash, balki ularni pedagogik jihatdan to‘g‘ri qo‘llash, o‘quvchilar bilan samarali muloqot o‘rnatish va ta'lim sifatini ta'minlash masalalarini ham o‘z ichiga oladi.
DOI: 10.6084/m9.figshare.30885097
title: Complete mitochondrial genome of the red alga <i>Besa japonica</i> (Gigartinales, Phyllophoraceae) from Korea

description: The complete mitochondrial genome (mitogenome) of <i>B. japonica</i> (Gigartinales, Phyllophoraceae) was determined for the first time using long-range PCR and primer walking. The mitogenome was 26,276 bp long, with three ribosomal RNA genes, 22 transfer RNA genes, and 23 protein-coding genes. It showed genetic similarity to the mitogenomes of related species in the Phyllophoraceae family; however, no introns were found in the ribosomal RNA genes (the large and small subunit genes) or the cytochrome c oxidase 1 gene. These features of the <i>B. japonica</i> mitogenome could prove useful for taxonomic differentiation among similar Phyllophoraceae species at the species and genus levels.
DOI: 10.6084/m9.figshare.30885097.v1
title: Complete mitochondrial genome of the red alga <i>Besa japonica</i> (Gigartinales, Phyllophoraceae) from Korea

description: The complete mitochondrial genome (mitogenome) of <i>B. japonica</i> (Gigartinales, Phyllophoraceae) was determined for the first time using long-range PCR and primer walking. The mitogenome was 26,276 bp long, with three ribosomal RNA genes, 22 transfer RNA genes, and 23 protein-coding genes. It showed genetic similarity to the mitogenomes of related species in the Phyllophoraceae family; however, no introns were found in the ribosomal RNA genes (the large and small subunit genes) or the cytochrome c oxidase 1 gene. These features of the <i>B. japonica</i> mitogenome could prove useful for taxonomic differentiation among similar Phyllophoraceae species at the species and genus levels.