cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7m6kg/10
title: Figs. 2c, 6b & 8b: ROM 60146 — Nectocaris pteryx (head) from the Burgess Shale, interference image

description: Interference image, using images under direct illumination and crossed polars. Specimen with well-preserved soft tissue has smooth, unornamented tentacle margins. Robustly lined funnel canal is surrounded by fleshy tissue.
DOI: 10.5061/dryad.84m54/9
title: Part 2 of volumetric data from a micro-CT scan of the anterior end of Phyllodoce sp.
DOI: 10.5061/dryad.84mf4/1
title: Reproductive skew data for parasitised and unparasitised nests

description: Nest attributes (group size, nest size, presence of workers, site) come from field records. Numbers of eggs produced by dominants and subordinates were obtained through microsatellite genotyping of parents and offspring. Relatedness estimates were calculated based on microsatellite genotypes of nest-mates. Body size data and data on egg size and number were obtained through morphological measurements.
DOI: 10.5061/dryad.85cb4/5
title: r_code_trees.r
DOI: 10.5061/dryad.8r7s5/1
title: data
DOI: 10.5061/dryad.9360pg2f/1
title: List of all studied ammonoid specimens from the Hunsrück Slate

description: A excel spreadsheet file which contains information (repository number and information, taxonomic assignment, locality, stratigraphy, preservation, collection) on all studied specimens (as discussed in the text).
DOI: 10.5061/dryad.94pv0/1
title: life50Long

description: Lifespan data for virgin males and females. Selection and Control populations are indicated in column 'Line' (S, C). Population replicate is indicated by column 'replicate' (1,2,3). The x,y columns were used only for plotting.
DOI: 10.5061/dryad.986kd/11
title: Pbr74 Anonymous
DOI: 10.5061/dryad.c2vm2/1
title: Data for Experiment 1

description: An excel file listing individuals, stimuli, and choice outcomes
DOI: 10.5061/dryad.c2vm2/2
title: Data for Experiment 2

description: An excel file listing individuals, stimuli, and choice outcomes
DOI: 10.5061/dryad.d1bc8/1
title: House&Simmons_2012

description: Z-scores for phenotypic variables measured in offspring following the half-sib breeding design. Sire, dam and offspring identities are provided with nominal numeric scores.
DOI: 10.5061/dryad.fr43s/1
title: Data from: Genome-wide SNP analysis reveals a genetic basis for sea-age variation in a wild population of Atlantic salmon (Salmo salar)
DOI: 10.5061/dryad.ft94b/3
title: Pathogen_data.tar

description: Sequence data from Lake whitefish kidney tissue for both dwarf and normal forms from all five lakes
DOI: 10.5061/dryad.k3311/2
title: Pairwise data

description: This .csv file contains genotypes for breeding pairs, i.e. data used for simulation of Mendelian inheritance and random mating.  Variables are – “Cohort”: breeding season (year).  “Sire” and “Sire TLR4”: identity of the male and his TLR4 genotype ("0" if ungenotyped).  “Dam” and “Dam TLR4”: identity of the female and her TLR4 genotype  ("0" if ungenotyped).  “Total offspring”: total number of known offspring (2-week-olds) produced by this pair.  “Geno’d offspring”: number of offspring that were genotyped.  “Pair bred before?”: whether the pair had bred before (0 = no, 1 = yes).
DOI: 10.5061/dryad.kh356/2
title: Data for GAM analysis

description: Data used to model the relative probability of occurrence of caribou track networks in winter as a function of the distance from the nearest anthropogenic disturbance (Table 1). Landscape features (distance from the nearest cut block or road, various land cover types) are provided at observed track network locations and at random locations.
DOI: 10.5061/dryad.mk471/1
title: Breast Cancer Data

description: Breast cancer data. This R-workspace contains the objects: dat, dat.st, event, st, and time.
DOI: 10.5061/dryad.mk471/10
title: Ovarian Cancer Data

description: Ovarian cancer data. This R-workspace contains the objects: dat, dat.st, event, st, and time.
DOI: 10.5061/dryad.mk471/7
title: Breast_ERNegHer2Neg_GSEA_Results

description: Results from GSEA Analysis in ER Neg HER2 Neg subtype of breast cancer
DOI: 10.5061/dryad.mk471/9
title: Breast_ERLow_GSEA_Results

description: Results from GSEA Analysis in ER+ low proliferation subtype of breast cancer
DOI: 10.5061/dryad.mn643/2
title: Preference-trait expression of trait in both sexes

description: Develops recursion equations for version of the model with trait expression in both sexes.
DOI: 10.5061/dryad.mn643/3
title: Preference-trait with search costs

description: Develops the model and provides simulation code for version of the model with search costs
DOI: 10.5061/dryad.mn643/4
title: Preference-trait simulation basic model

description: Simulation code for the basic model
DOI: 10.5061/dryad.mn643/5
title: Preference-trait simulation both sexes

description: Simulation code for version of the model with expression of the trait in both sexes.
DOI: 10.5061/dryad.mn643/6
title: Preference-trait simulation best-of-n

description: Simulation code for version of the model with best-of-n mating algorithm
DOI: 10.5061/dryad.mn643/7
title: Evolution of preference strength

description: Development of recursions and simulation code for model of evolution of preference strength.
DOI: 10.5061/dryad.mn643/8
title: Approx large alpha

description: Derivations of the approximate equilibrium with strong selection
DOI: 10.5061/dryad.p9t05/1
title: Full data set

description: Full data set
DOI: 10.5061/dryad.s3003/1
title: RobbinsLangkilde2012JEB_Data_ArchivedDryad

description: Data collected in the field. Entered into Microsoft Excel (.xlsx file). Abbreviations: AR=Arkansas site, AL=Alabama site, exper=experimental group, J=juvenile, A=adult.  All else is self explanatory with publication.
DOI: 10.5061/dryad.t201q/1
title: Short intron sequence alignment of the 2L chromosome arm

description: We analyzed whole-genome data (Langley C. et al., accepted 2012) of D. melanogaster (Release 1.0) from a sample of six inbred Malawi isofemale lines from the 50 genomes Drosophila Population Genomics Project (DPGP) (http://www.dpgp.org/ ). We downloaded (http://genome.ucsc.edu/ ) aligned single sequences of D. simulans, D. sechellia, D. erecta and D. yakuba (Release 5) (Begun et al., 2007; Clark et al., 2007) and combined them with the six D. melanogaster sequences into a multiple alignment for all autosomes. We used position 8 to 30 in short introns (less than 66 bp) as these are thought to be the least constrained sites in the Drosophila genome (Halligan and Keightley, 2006; Parsch et al., 2010). We used the D. melanogaster Flybase annotation (release 5.31) to identify these sites. Introns, which overlapped with coding regions were excluded from the analyses. Python scripts were written to concatenate all 23 considered positions per short intron into one alignment file for each chromosome arm.
DOI: 10.5061/dryad.t201q/2
title: Short intron sequence alignment of the 2R chromosome arm

description: We analyzed whole-genome data (Langley C. et al., accepted 2012) of D. melanogaster (Release 1.0) from a sample of six inbred Malawi isofemale lines from the 50 genomes Drosophila Population Genomics Project (DPGP) (http://www.dpgp.org/ ). We downloaded (http://genome.ucsc.edu/ ) aligned single sequences of D. simulans, D. sechellia, D. erecta and D. yakuba (Release 5) (Begun et al., 2007; Clark et al., 2007) and combined them with the six D. melanogaster sequences into a multiple alignment for all autosomes. We used position 8 to 30 in short introns (less than 66 bp) as these are thought to be the least constrained sites in the Drosophila genome (Halligan and Keightley, 2006; Parsch et al., 2010). We used the D. melanogaster Flybase annotation (release 5.31) to identify these sites. Introns, which overlapped with coding regions were excluded from the analyses. Python scripts were written to concatenate all 23 considered positions per short intron into one alignment file for each chromosome arm.
DOI: 10.5061/dryad.084g8/6
title: MITO data set - LOG output
DOI: 10.5061/dryad.084g8/7
title: Balaenoptera physalus sample information
DOI: 10.5061/dryad.084g8/9
title: MITO data set - annotated tree
DOI: 10.5061/dryad.11350/12
title: 13 gene Alignment with MrBayes block

description: NEXUS format file of 13-gene alignment with command block incluzding settings for MrBayes Bayesian Inference phylogenetic analysis.
DOI: 10.5061/dryad.25131/5
title: propDur_r0.01_09-15-12

description: R script simulating clades under various models of differentiation and estimating the proportion of taxa with an observable, sampled duration.
DOI: 10.5061/dryad.369q9/2
title: Joshua tree genotypes

description: Diploid genotypes at ten microsatellite loci for Joshua tree, given as PCR fragment size.
DOI: 10.5061/dryad.369q9/3
title: Tegeticula synthetica genotypes

description: Diploid genotypes at nine microsatellite loci for Tegeticula synthetica, given as motif repeat counts.
DOI: 10.5061/dryad.43g64/1
title: Asparagales
DOI: 10.5061/dryad.44r25/2
title: Waving data - duration and intensity

description: This excel spreadsheet contains the data relating to the persistence and intensity of the males' waving bouts. It was collected in the field in Zanzibar. Please see the second worksheet for a description of thecolumn headings.
DOI: 10.5061/dryad.4f46b/1
title: Environmental data

description: Environmental data associated with individual great tits and coordinates for their breeding nest box
DOI: 10.5061/dryad.4ff1t/1
title: Morphological measurements D. scandens Tulum diallel
DOI: 10.5061/dryad.4ff1t/3
title: Pedigree D. scandens Tulum diallel
DOI: 10.5061/dryad.4ff1t/4
title: Pedigree D. scandens Tovar diallel
DOI: 10.5061/dryad.4ff1t/5
title: Morphological measurements D. scandens populations
DOI: 10.5061/dryad.4ff1t/6
title: Phylogeny large-glanded populations
DOI: 10.5061/dryad.4ff1t/7
title: Phylogeny small-glanded populations
DOI: 10.5061/dryad.4ff1t/8
title: Readme
DOI: 10.5061/dryad.4jj8r/2
title: Supplementary Table 3

description: The average effects of the balancer on mating for simulans/Balancer genotypes tested.
DOI: 10.5061/dryad.5167t/1
title: Weddle et al

description: Gas chromatographic analysis of CHCs of male and female decorated crickets, Gryllodes sigillatus from 9 inbred genetic lines reared on two different diet qualities. | Diet 1 = high-quality diet | Diet 2 = low-quality diet | Data represent raw peak areas for each of the 15 hydrocarbon peaks identified (Peak 1 - 15)  by GC, and includes the raw peak area for the dodecane internal standard used in all samples.
DOI: 10.5061/dryad.64s2v/1
title: Edraianthus graminifolius_AFLP data matrix

description: AFLP data matrix of Edraianthus graminifolius
DOI: 10.5061/dryad.6b5f0/1
title: ParasitismAssay.FitnessAssay.DryadData

description: First tab contains the parasitism assay data. The second tab contains the fitness assay data.
DOI: 10.5061/dryad.6f48r/1
title: Supplemental Data Set 1

description: Proteins identified in cassava samples from 4 PPD time points
DOI: 10.5061/dryad.6f48r/2
title: Supplemental Data Set 2
DOI: 10.5061/dryad.6f48r/3
title: Supplemental Data Set 3

description: T3PQ-based protein abundances of identified proteins in cassava roots at time 0 h
DOI: 10.5061/dryad.6f48r/4
title: Supplemental Data Set 4

description: Label-free MS1-based quantitative data and statistical analysis of cassava proteins detected in cassava samples from 4 PPD time points
DOI: 10.5061/dryad.6f48r/5
title: Supplemental Data Set 5

description: List of proteins identified with single PSM and their corresponding spectrum.
DOI: 10.5061/dryad.6f48r/6
title: Supplemental File 1

description: Please note: The package must be installed with admin rights on a win machine. The MATLAB Compiler Runtime (MCR, MathWorks, http://www.mathworks.ch/products/compiler/mcr/) should be installed prior to the installation of the PPD Symptom Score Software. The clk_root_sec_hist.exe is extracted in the same folder and can be executed as follows: i) a figure file is chosen; ii) the root section is marked with a polygon and finished by a double click or return (points can be deleted with backspace) iii) Histogram data and distribution parameter including the PPD score are written in a csv file in the subfolder Regionhist. Disclaimer: The program is provided without any guarantees or warranty. Although the author has attempted to find and correct any bugs in the free software programs, the author is not responsible for any damage or losses of any kind caused by the use or misuse of the programs. The author is under no obligation to provide support, service, corrections, or upgrades to the free software programs.
DOI: 10.5061/dryad.6gd51/2
title: Summary table of gut content DNA sequencing

description: The table presents the number of sequences per OTU and per sample (fish gut). Sequence clustering was done using CROP. OTUs were identified from BLASTn searches performed in the Moorea BIOCODE database and GENBANK. We provide BIOCODE specimen number and/or GenBank accession number in the table whenever sequence similarity to a reference barcode was &gt;98%. Additional information on BIOCODE specimen can be obtained from http://biocode.berkeley.edu/. When sequence similarity was &lt;98%, we used the Bayesian assignment tool implemented in SAP to assign each OTU to a higher taxonomic group, accepting assignments at a significance level of 95% (posterior probability). Note that the representative sequence for each OTU is provided as a supplementary file in the manuscript.
DOI: 10.5061/dryad.6q3t1/3
title: 3_IMa2_inputfile_betweenspecies

description: input file for Ima2 inference between species
DOI: 10.5061/dryad.6q3t1/4
title: 4_IMa2_inputfile_Pastriata
DOI: 10.5061/dryad.74tr3/1
title: Roots Data

description: Raw data from plants grown in the greenhouse.
DOI: 10.5061/dryad.75nv22qj/10
title: turtles-mrbayes-thin-100-output.tar.bz2

description: MRBAYES output following 5,000,000 iterations (thin=100) after inputting turtles-mrbayes-concatenated-nexus-file.nex.bz2. We thinned this output to generate the "thin-500" and "thin-1000" data sets by keeping every 500th and 1000th records, respectively.
DOI: 10.5061/dryad.75nv22qj/11
title: turtles-mrbayes-thin-500-output.tar.bz2

description: MRBAYES output following 5,000,000 iterations (thin=500) after inputting turtles-mrbayes-concatenated-nexus-file.nex.bz2. We generated this output from the "thin-100" data set (turtles-mrbayes-thin-100-output.tar.bz2) by keeping every 500th record.
DOI: 10.5061/dryad.75nv22qj/13
title: turtles-genetrees-from-cloudforest.tar.bz2

description: Genetrees generated from the data in turtles-individual-nexus-files-for-loci.tar.bz2 using Cloudforest (map-reduce Phybase).
DOI: 10.5061/dryad.75nv22qj/14
title: turtles-genetrees-1000-bootreps-from-cloudforest.bz2

description: Genetree bootstrap replicates generated from the data in turtles-individual-nexus-files-for-loci.tar.bz2 using Cloudforest (map-reduce Phybase).
DOI: 10.5061/dryad.75nv22qj/9
title: turtles-mrbayes-concatenated-nexus-file.nex

description: MRBAYES input file built from partitioning loci by substitution models (in turtles-mrbayes-substitution-models-from-mraic.tar.bz2) and concatenating loci (in turtles-individual-nexus-files-for-loci.tar.bz2).
DOI: 10.5061/dryad.7th86/1
title: Hylid_Sexlinked_MicrosatRepeats
DOI: 10.5061/dryad.800h8/1
title: Ord_TJ-JEB-2012-00244R1_data

description: All data used in study, including sample sizes, variance and sources
DOI: 10.5061/dryad.802t8/2
title: Details of phylogenetic analyses

description: Phylogentic reconstructions and Mesquite analyses. See readme file for detials.
DOI: 10.5061/dryad.83h07/2
title: Daily occurrence of bottlenose dolphins' foraging buzzes in POD data from the Moray Firth, Scotland

description: The data were collected using T-PODs and C-PODs (www.chelonia.co.uk). The foraging buzzes were identified in the echolocation time series using a Gaussian mixture model. For each daily record, if a buzz was present the value for "presdaily.buzzes" is equal to 1. For each record, the values of the available covariates are also provided. The column "id.gees" indicates the blocking factor used for GEEs.
DOI: 10.5061/dryad.84m54/6
title: Volumetric data from a micro-CT scan of the anterior end of Phyllodoce lineata
DOI: 10.5061/dryad.94pv0/3
title: lifeMatedLong

description: Lifespan data for mated females and males. Population Treatment is indicated by variable 'Line' (S or C), 'dead' is number dead at that census, censor is censoring variable, day is the age of flies at that census. Population replicate is indicated by variable 'set' (1,2,3).
DOI: 10.5061/dryad.b40hm/1
title: Study data

description: These are the individual study characteristics, paticipant descriptors, estimates (OR), and risk of bias scores.
DOI: 10.5061/dryad.c0164/8
title: male reinf learn loop prog eig

description: Program for the male learning model that calculates the eigenvalues describing the rate of spread of an allele for assortative mating.
DOI: 10.5061/dryad.df47h/2
title: Phenotype data_aphid scores

description: This file contains aphid scoring data for greenhouse and field tests.
DOI: 10.5061/dryad.dh546/1
title: Newly added characters and data matrix for oviraptorids phylogeny

description: This character description was modified from Longrich et al. (Longrich, N. R., Currie, P. J. & Dong, Z. M. 2010 A new oviraptorid (Dinosauria: Theropoda) from the Upper Cretaceous of Bayan Mandahu, Inner Mongolia. Palaeontology, 53, 945–960). The matrix was expanded by adding four characters and two taxa (Banji long and Ganzhousaurus nankangensis; for a total of 185 characters and 19 taxa).
DOI: 10.5061/dryad.dh7kh/4
title: 19_taxon_dataset_large_chromosome

description: Alignment of large chromosome for 19-taxon dataset (LCBs concatenated)
DOI: 10.5061/dryad.g216n/1
title: IMa2 input file, mtDNA lineage J, Lissotriton montandoni and L. vulgaris
DOI: 10.5061/dryad.g52m3/1
title: 0.Demultiplexing and dropbase

description: Contains the custom Perl scripts of the pipeline used to demultiplex raw reads and drop a base position that was causing a lane effect.
DOI: 10.5061/dryad.h6q26/1
title: Data_males

description: Excel version of Table 1 (males) in paper. Data originally published in Baker, R. H. and G. S. Wilkinson. 2001. Phylogenetic analysis of sexual dimorphism and eye-span allometry in stalk-eyed flies (Diopsidae). Evolution 55: 1373-1385.
DOI: 10.5061/dryad.j3459/1
title: JEB-2012-00106.R1_data_body mass at emergence

description: Body mass at emergence of C. maculatus collected in the laboratory. Presented are four selection treatments (C = Control, T = Trend, R = Red noise, W = White noise). split temp = two temperature environments the beetles were exposed to during the split brood experiment. replicate: replicate is nested within treatment(4 replicates per treatment). time point: time point of beetle collection during their emergence period (1 = early, 2 = intermediate, 3 = late hatching individuals). Fam = Family nested within replicate and treatment, per replicate 10 families were investigated. sex = sex of the individual measured. body mass = dry weight of beetle.
DOI: 10.5061/dryad.k41qk/14
title: IMa2_AKAM110722_9Nuc_Mito
DOI: 10.5061/dryad.kh466/1
title: Contemporary population structure site location file

description: Name (mountain name_low/high altitude), location (latitude and longitude) and altitude of sites included in the contemporary population structure analyses.
DOI: 10.5061/dryad.m691k/1
title: Data_Christianen_Plosone_2013_
DOI: 10.5061/dryad.m9t12/11
title: Silverman_et_al_2012b_Atlantic coast wintering sea duck survey 2008-11 Report

description: Reference S10. Silverman ED, Leirness JB, Saalfeld DT, Koneff MD, and Richkus, KD. 2012b. Atlantic coast wintering sea duck survey, 2008 – 2011. Laurel, Maryland: U.S. Fish and Wildlife Service.
DOI: 10.5061/dryad.nr353/2
title: Remove_Duplicate_Rules
DOI: 10.5061/dryad.pt886/1
title: Nandy et al. Sperm competitive ability and associated data
DOI: 10.5061/dryad.q0r11/1
title: Fatouros et al. raw data file

description: All data presented in figure 1-3
DOI: 10.5061/dryad.q31f8/4
title: Arlq_trans_Arctic_populations_concat

description: Arlequin input files with population grouping for concatenated data.
DOI: 10.5061/dryad.q31f8/5
title: IM_CYTB_NWP_MEZCHE

description: IM input file for comparing NW Pacific lineage with Mezen-Chesha populations.
DOI: 10.5061/dryad.r6209/1
title: 727_MorseCanyon_fitness

description: Inbreeding depression and seed files for greenhouse study on Morse Canyon population
DOI: 10.5061/dryad.rb89t/1
title: data_Correlational selection on pro- and anti-inflammatory effectors_Guerreiro-et-al
DOI: 10.5061/dryad.ss1d1/1
title: cram.female.mass

description: Female mass data
DOI: 10.5061/dryad.ss1d1/2
title: cram.female.mda

description: Female MDA data
DOI: 10.5061/dryad.ss1d1/3
title: cram.female.sod

description: Female SOD data
DOI: 10.5061/dryad.ss1d1/4
title: cram.female.TEAC

description: Female TEAC data
DOI: 10.5061/dryad.ss1d1/5
title: cram.male.TEAC

description: Male TEAC data
DOI: 10.5061/dryad.ss1d1/6
title: cram.male.sod

description: Male SOD data
DOI: 10.5061/dryad.ss1d1/7
title: cram.male.mda

description: Male MDA data
DOI: 10.5061/dryad.ss1d1/8
title: cram.male.mass

description: Male mass data
DOI: 10.5061/dryad.t201q/3
title: Short intron sequence alignment of the 3L chromosome arm

description: We analyzed whole-genome data (Langley C. et al., accepted 2012) of D. melanogaster (Release 1.0) from a sample of six inbred Malawi isofemale lines from the 50 genomes Drosophila Population Genomics Project (DPGP) (http://www.dpgp.org/ ). We downloaded (http://genome.ucsc.edu/ ) aligned single sequences of D. simulans, D. sechellia, D. erecta and D. yakuba (Release 5) (Begun et al., 2007; Clark et al., 2007) and combined them with the five D. melanogaster sequences into a multiple alignment for all autosomes. We used position 8 to 30 in short introns (less than 66 bp) as these are thought to be the least constrained sites in the Drosophila genome (Halligan and Keightley, 2006; Parsch et al., 2010). We used the D. melanogaster Flybase annotation (release 5.31) to identify these sites. Introns, which overlapped with coding regions were excluded from the analyses. Python scripts were written to concatenate all 23 considered positions per short intron into one alignment file for each chromosome arm.
DOI: 10.5061/dryad.vf210/1
title: ALL_FINAL