cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8238713
title: Complementary Data of Groundwater model for the Publication: "Comparison of methods to calculate groundwater recharge for karst aquifers under Mediterranean climate"

description: This repository provides the resources related to the publication "Comparison of methods to calculate groundwater recharge for karst aquifers under Mediterranean climate." It includes the groundwater model data sets.
description: This work was supported by the German Federal Ministry of Education and Research (BMBF) under grant numbers 02WGR1428C and 02WM1533A. The authors would like to express their appreciation to the partners of the MedWater project. Additionally, the authors extend their gratitude to Muath Abusaada and Flann Corcoran for providing aquifer data and a primary Modflow model. This publication was made possible with the support of the Open Access Publication Funds by the Technical University of Berlin.
DOI: 10.5281/zenodo.8238714
title: Complementary Data of Groundwater model for the Publication: "Comparison of methods to calculate groundwater recharge for karst aquifers under Mediterranean climate"

description: This repository provides the resources related to the publication "Comparison of methods to calculate groundwater recharge for karst aquifers under Mediterranean climate." It includes the groundwater model data sets.
description: This work was supported by the German Federal Ministry of Education and Research (BMBF) under grant numbers 02WGR1428C and 02WM1533A. The authors would like to express their appreciation to the partners of the MedWater project. Additionally, the authors extend their gratitude to Muath Abusaada and Flann Corcoran for providing aquifer data and a primary Modflow model. This publication was made possible with the support of the Open Access Publication Funds by the Technical University of Berlin.
DOI: 10.5281/zenodo.10528510
title: The contribution of the R-PAS in the assessment of Adolescents with Suicidal Ideation and Behaviors

description: Introduction

This database includes the raw data linked with the paper “The contribution of the R-PAS in the assessment of Adolescents with Suicidal Ideation and Behaviors” published on “JOURNAL NAME”.

In this paper, we aimed to establish the suicide risk of those who seek psychiatric treatment as far as possible. Given that the presence of ideation is often denied by actual suicidal individuals – due to shame, stigma, and fear of being a burden to others – the Rorschach test may contribute to the assessment of risk/protective factors in personality functioning.

Methods

We administered the Multi-Attitude Suicide Tendency scale (MAST), Columbia-Suicide Severity Rating Scale (C-SSRS), Rorschach-Performance Assessment System (R-PAS) to 136 adolescents (outpatient or inpatient) admitted to the Child Neuropsychiatry department of Lecco and Pavia (Italy). We identified 95 patients with suicidal concern (SC) and 41 with no suicidal concern (N.SC).

Results (in brief): There were significant differences in means of the SC-Comp among N.SC and SC groups; among the sub-components that make up this index, the most significantly related to suicidal concern were the variables VFD, CBlend, MOR, LSO-Cmplx, and Ego Index. The SC-Comp was, however, not able to distinguish adolescents with suicidal ideation from those with actual suicidal attempts, and this result is in line with the literature.
DOI: 10.5281/zenodo.10528509
title: The contribution of the R-PAS in the assessment of Adolescents with Suicidal Ideation and Behaviors

description: Introduction

This database includes the raw data linked with the paper “The contribution of the R-PAS in the assessment of Adolescents with Suicidal Ideation and Behaviors” published on “JOURNAL NAME”.

In this paper, we aimed to establish the suicide risk of those who seek psychiatric treatment as far as possible. Given that the presence of ideation is often denied by actual suicidal individuals – due to shame, stigma, and fear of being a burden to others – the Rorschach test may contribute to the assessment of risk/protective factors in personality functioning.

Methods

We administered the Multi-Attitude Suicide Tendency scale (MAST), Columbia-Suicide Severity Rating Scale (C-SSRS), Rorschach-Performance Assessment System (R-PAS) to 136 adolescents (outpatient or inpatient) admitted to the Child Neuropsychiatry department of Lecco and Pavia (Italy). We identified 95 patients with suicidal concern (SC) and 41 with no suicidal concern (N.SC).

Results (in brief): There were significant differences in means of the SC-Comp among N.SC and SC groups; among the sub-components that make up this index, the most significantly related to suicidal concern were the variables VFD, CBlend, MOR, LSO-Cmplx, and Ego Index. The SC-Comp was, however, not able to distinguish adolescents with suicidal ideation from those with actual suicidal attempts, and this result is in line with the literature.
DOI: 10.5281/zenodo.10813061
title: Gendered narratives and cultural shifts: A qualitative study on decadal changes in community alcohol consumption
DOI: 10.34740/kaggle/dsv/7852966
title: Mahanagar Yatayat Transport Dataset
DOI: 10.5281/zenodo.10813060
title: Gendered narratives and cultural shifts: A qualitative study on decadal changes in community alcohol consumption
DOI: 10.5281/zenodo.8199048
title: AneuploidyML_Datasets: Machine-learning analysis of factors that shape cancer aneuploidy landscapes reveals an important role for negative selection

description: This is raw data that were used to build the processed dataset for training and testing the machine learning
DOI: 10.5281/zenodo.8199047
title: AneuploidyML_Datasets: Machine-learning analysis of factors that shape cancer aneuploidy landscapes reveals an important role for negative selection

description: This is raw data that were used to build the processed dataset for training and testing the machine learning
DOI: 10.5281/zenodo.8263046
title: BaiJ and BaiB are key enzymes in the chenodeoxycholic acid 7a-dehydroxylation pathway in the gut microbe Clostridium scindens ATCC 35704

description: Data set for bile acid quantification for manuscript:

BaiJ and BaiB are key enzymes in the chenodeoxycholic acid 7a-dehydroxylation pathway in the gut microbe Clostridium scindens ATCC 35704.

By Karin Lederballe Meibom et al.

Gut Microbes, 2024: 16:1, 2323233

https://doi.org/10.1080/19490976.2024.2323233
DOI: 10.5281/zenodo.8263047
title: BaiJ and BaiB are key enzymes in the chenodeoxycholic acid 7a-dehydroxylation pathway in the gut microbe Clostridium scindens ATCC 35704

description: Data set for bile acid quantification for manuscript:

BaiJ and BaiB are key enzymes in the chenodeoxycholic acid 7a-dehydroxylation pathway in the gut microbe Clostridium scindens ATCC 35704.

By Karin Lederballe Meibom et al.

Gut Microbes, 2024: 16:1, 2323233

https://doi.org/10.1080/19490976.2024.2323233
DOI: 10.5281/zenodo.7746424
title: Monterey Bay, Monterey Peninsula, and Santa Cruz Directional Spectra

description: Directional spectra estimated from SOFAR Ocean Spotter buoy and Nortek Signature 1000 acoustic doppler current profilers. 

Data used in the manuscript "Shoreline and Bottom-Influenced Sea-Swell Wave Reflection Across Sandy and Rocky Shores" by Collins, MacMahan, Thornton, Benbow and Jessen.

Code used to generate the directional spectra from the Nortek Signature 1000 ADCP is available at: https://github.com/patrick-aus/Bayesian-Directional-Tilted-ADCP
DOI: 10.6084/m9.figshare.25417525
title: 20240316_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25417525.v1
title: 20240316_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.5281/zenodo.10669702
title: Serum D-serine to total serine ratio and glycine levels as predictive biomarkers for cognitive dysfunction in frail elderly subjects

description: Here we report (i) the raw data used to conduct the study analyses; (ii) a list of online-only supplementary tables.

Abstract: Frailty is a common age-related clinical syndrome characterized by a decline in the function of multiple organ systems, increased vulnerability to stressors and huge socio-economic burden on healthcare systems. Despite recent research efforts, the physiopathological mechanisms concurring to determine frailty remain elusive and biomarkers able to predate its occurrence in the early stages are still lacking. Beyond its physical component, cognitive decline represents a crucial domain of frailty associated with higher risk of adverse health outcomes. Previous OMICS studies showed a range of metabolic abnormalities in frail compared to non-frail subjects, such as dysregulation in the blood levels of glutamate, carnitine, urea cycle and kidney markers, as well as of anti-oxidants and pro-inflammatory cytokines.

Here, in a well-characterized cohort of elderly subjects encompassing the entire continuum from fitness to frailty, we measured by High Performance Liquid Chromatography (HPLC) a pool of serum amino acids including L-glutamate, L-aspartate, glycine and D-serine, as well as their precursors L-glutamine, L-asparagine and L-serine. These amino acids are known to orchestrate excitatory and inhibitory neurotransmission the brain, but also play a key role as intermediates of energy metabolism and are critically involved in liver, kidney, muscle and immune system functioning. To comprehensively assess frailty, we employed both the Edmonton Frail Scale (EFS), as a practical and quick tool to capture the multidimensionality of frailty, and the frailty phenotype, as a measure of physical function. We found that D-serine and D-/Total serine ratio were independent predictors of EFS but not of physical frailty. Furthermore, higher glycine levels and D-/Total serine correlated with worse cognition and depressive symptoms in the frail group. Taken together, these findings suggest that altered homeostasis of blood D-serine may represent a biochemical signature of frailty in the elderly, while increased serum glycine and D-/Total serine ratio could be specifically associated with cognitive decline and depression in frail older populations.
DOI: 10.5281/zenodo.10669703
title: Serum D-serine to total serine ratio and glycine levels as predictive biomarkers for cognitive dysfunction in frail elderly subjects

description: Here we report (i) the raw data used to conduct the study analyses; (ii) a list of online-only supplementary tables.

Abstract: Frailty is a common age-related clinical syndrome characterized by a decline in the function of multiple organ systems, increased vulnerability to stressors and huge socio-economic burden on healthcare systems. Despite recent research efforts, the physiopathological mechanisms concurring to determine frailty remain elusive and biomarkers able to predate its occurrence in the early stages are still lacking. Beyond its physical component, cognitive decline represents a crucial domain of frailty associated with higher risk of adverse health outcomes. Previous OMICS studies showed a range of metabolic abnormalities in frail compared to non-frail subjects, such as dysregulation in the blood levels of glutamate, carnitine, urea cycle and kidney markers, as well as of anti-oxidants and pro-inflammatory cytokines.

Here, in a well-characterized cohort of elderly subjects encompassing the entire continuum from fitness to frailty, we measured by High Performance Liquid Chromatography (HPLC) a pool of serum amino acids including L-glutamate, L-aspartate, glycine and D-serine, as well as their precursors L-glutamine, L-asparagine and L-serine. These amino acids are known to orchestrate excitatory and inhibitory neurotransmission the brain, but also play a key role as intermediates of energy metabolism and are critically involved in liver, kidney, muscle and immune system functioning. To comprehensively assess frailty, we employed both the Edmonton Frail Scale (EFS), as a practical and quick tool to capture the multidimensionality of frailty, and the frailty phenotype, as a measure of physical function. We found that D-serine and D-/Total serine ratio were independent predictors of EFS but not of physical frailty. Furthermore, higher glycine levels and D-/Total serine correlated with worse cognition and depressive symptoms in the frail group. Taken together, these findings suggest that altered homeostasis of blood D-serine may represent a biochemical signature of frailty in the elderly, while increased serum glycine and D-/Total serine ratio could be specifically associated with cognitive decline and depression in frail older populations.
DOI: 10.5281/zenodo.10813086
title: FAKTORIALLAR
DOI: 10.5281/zenodo.10813087
title: FAKTORIALLAR
DOI: 10.5281/zenodo.10813057
title: THE MAIN PARTICIPANTS IN THE GREEN BOND MARKET
DOI: 10.5281/zenodo.10813056
title: THE MAIN PARTICIPANTS IN THE GREEN BOND MARKET
DOI: 10.5281/zenodo.10812993
title: Discovering cryptic pocket opening and binding of a stimulant derivative in a vestibular site of the 5-HT3A receptor

description: Raw MD simulation data of 4-Bromoamphetamine-5HT3A complex in two different forceeild, AMBER and CHARMM.

Original paper title: "Discovering cryptic pocket opening and binding of a stimulant derivative in a vestibular site of the 5-HT3A receptor"

Author list: Nandan Haloi, Emelia Karlsson, Marc Delarue, Rebecca J. Howard, Erik Lindahl
DOI: 10.5281/zenodo.10812994
title: Discovering cryptic pocket opening and binding of a stimulant derivative in a vestibular site of the 5-HT3A receptor

description: Raw MD simulation data of 4-Bromoamphetamine-5HT3A complex in two different forceeild, AMBER and CHARMM.

Original paper title: "Discovering cryptic pocket opening and binding of a stimulant derivative in a vestibular site of the 5-HT3A receptor"

Author list: Nandan Haloi, Emelia Karlsson, Marc Delarue, Rebecca J. Howard, Erik Lindahl
DOI: 10.5281/zenodo.10804157
title: Spherical harmonic models of the shape of asteroid (1) Ceres [DLR SPG]

description: This archive contains four spherical harmonic models of the shape of asteroid (1) Ceres, truncated at different maximum spherical harmonic degrees. The highest resolution model has a maximum spherical harmonic degree of 5399, which was generated from a shape model sampled at 60 pixels per degree.

The data used to generate these models are from a DLR stereo photogrammetric shape model based on Dawn high altitude mapping orbit framing camera images, as found in the file CE_HAMO_G_00N_180E_EQU_DTM.IMG on NASA's PDS website. This image file was first converted to netcdf format using the generic-mapping-tools function xyz2grd, it was then converted to a gridline registration using the function grdsample, and the resulting netcdf file was read into the pyshtools software and expanded into spherical harmonics using the function SHCoeffs.expand(). The spherical harmonic functions were chosen to be "4pi" normalized and to exclude the Condon-Shortley phase factor of (-1)m. The units of the coefficients are meters.

The four files in this archive are



Ceres_shape_5399.sh.gz

Ceres_shape_2879.sh.gz

Ceres_shape_1439.sh.gz

Ceres_shape_719.sh.gz


The numbers 5399, 2879, 1439, and 719 in the filename refer to the maximum spherical harmonic degree of file, which corresponds to effective spatial resolutions of 60, 32, 16, and 8 pixels per degree, respectively. The files are stored in the binary "bshc" format as described in the pyshtools documentation and are furthermore compressed using gzip. The lower resolution models were generated by truncating the spherical harmonic coefficients of the highest resolution model.
DOI: 10.5281/zenodo.10796954
title: Spherical harmonic models of the shape of the Moon (principal axis coordinate system) [LOLA]

description: This archive contains four spherical harmonic models of the shape of the Moon in a principal axis coordinate system, truncated at different maximum spherical harmonic degrees. The highest resolution model has a maximum spherical harmonic degree of 5759, which was generated from a lunar shape model sampled at 64 pixels per degree.

The data used to generate these models are from the LOLA instrument on the Lunar Reconaissance Orbiter, as found in the file ldem_64_pa.img on NASA's PDS website. This image file was first converted to netcdf format using the generic-mapping-tools function xyz2grd, and the resulting gridline-registered netcdf file was read into the pyshtools software and expanded into spherical harmonics using the function SHCoeffs.expand(). The spherical harmonic functions were chosen to be "4pi" normalized and to exclude the Condon-Shortley phase factor of (-1)m. The units of the coefficients are meters.

The four files in this archive are



Moon_shape_pa_5759.sh.gz

Moon_shape_pa_2879.sh.gz

Moon_shape_pa_1439.sh.gz

Moon_shape_pa_719.sh.gz


The numbers 5759, 2879, 1439, and 719 in the filename refer to the maximum spherical harmonic degree of file, which corresponds to effective spatial resolutions of 64, 32, 16, and 8 pixels per degree, respectively. The files are stored in the binary "bshc" format as described in the pyshtools documentation and are furthermore compressed using gzip. The lower resolution models were generated by truncating the spherical harmonic coefficients of the highest resolution model.

This shape model uses the same coordinate system as most lunar gravity models. The principal axis coordinate system differs from the more common mean Earth/polar axis system by about 1 km at the equator. For a mean Earth/polar axis model, use Spherical harmonic models of the shape of the Moon.
DOI: 10.5281/zenodo.10812847
title: Spherical harmonic models of the shape of asteroid (1) Ceres [JPL SPC]

description: This archive contains two spherical harmonic models of the shape of asteroid (1) Ceres, truncated at different maximum spherical harmonic degrees. The highest resolution model has a maximum spherical harmonic degree of 1023, which was generated from an ICQ shape model with Q=1024.

The data used to generate these models are from a JPL stereo photoclinometric shape model based on Dawn framing camera images, as found in the file CERES_SPC181019_1024.ICQ on NASA's PDS website. The vertices were first converted from Cartesian to spherical coordinates, from which a regular gridline registered netcdf file was created using the generic-mapping-tools function surface with a tension of 0.6 and with a grid spacing of 0.087890625 degrees. This file was then read into the pyshtools software and expanded into spherical harmonics using the function SHCoeffs.expand(). The spherical harmonic functions were chosen to be "4pi" normalized and to exclude the Condon-Shortley phase factor of (-1)m. The units of the coefficients are meters.

The two files in this archive are



Ceres_JPL_SPC_shape_1023.sh.gz

Ceres_JPL_SPC_shape_719.sh.gz


The numbers 1023 and 719 in the filename refer to the maximum spherical harmonic degree of file, which corresponds to effective spatial resolutions of ~11.4 and 8 pixels per degree, respectively. The files are stored in the binary "bshc" format as described in the pyshtools documentation and are furthermore compressed using gzip. The lower resolution model was generated by truncating the spherical harmonic coefficients of the highest resolution model.
DOI: 10.5281/zenodo.10812848
title: Spherical harmonic models of the shape of asteroid (1) Ceres [JPL SPC]

description: This archive contains two spherical harmonic models of the shape of asteroid (1) Ceres, truncated at different maximum spherical harmonic degrees. The highest resolution model has a maximum spherical harmonic degree of 1023, which was generated from an ICQ shape model with Q=1024.

The data used to generate these models are from a JPL stereo photoclinometric shape model based on Dawn framing camera images, as found in the file CERES_SPC181019_1024.ICQ on NASA's PDS website. The vertices were first converted from Cartesian to spherical coordinates, from which a regular gridline registered netcdf file was created using the generic-mapping-tools function surface with a tension of 0.6 and with a grid spacing of 0.087890625 degrees. This file was then read into the pyshtools software and expanded into spherical harmonics using the function SHCoeffs.expand(). The spherical harmonic functions were chosen to be "4pi" normalized and to exclude the Condon-Shortley phase factor of (-1)m. The units of the coefficients are meters.

The two files in this archive are



Ceres_JPL_SPC_shape_1023.sh.gz

Ceres_JPL_SPC_shape_719.sh.gz


The numbers 1023 and 719 in the filename refer to the maximum spherical harmonic degree of file, which corresponds to effective spatial resolutions of ~11.4 and 8 pixels per degree, respectively. The files are stored in the binary "bshc" format as described in the pyshtools documentation and are furthermore compressed using gzip. The lower resolution model was generated by truncating the spherical harmonic coefficients of the highest resolution model.
DOI: 10.6084/m9.figshare.25417507
title: Metadata files including antrophometrics, questionnaries, and biochemestry.

description: Microbiome gut community structure and functionality is associated with symptoms severity in non-responsive celiac disease patients undergoing gluten-free diet.
DOI: 10.6084/m9.figshare.25417507.v1
title: Metadata files including antrophometrics, questionnaries, and biochemestry.

description: Microbiome gut community structure and functionality is associated with symptoms severity in non-responsive celiac disease patients undergoing gluten-free diet.
DOI: 10.5281/zenodo.10129152
title: Additional Resources for End-user Comprehension of Transfer Risks in Smart Contracts

description: Google Docs versions of most of the PDFs can be found on https://linktr.ee/tethersurvey

 

Additionally, a survey data visualizer is found on https://tether-survey.onrender.com/
DOI: 10.5281/zenodo.10129153
title: Additional Resources for End-user Comprehension of Transfer Risks in Smart Contracts

description: Google Docs versions of most of the PDFs can be found on https://linktr.ee/tethersurvey
 
Additionally, a survey data visualizer is found on https://tether-survey.onrender.com/
DOI: 10.5281/zenodo.10813249
title: Additional Resources for End-user Comprehension of Transfer Risks in Smart Contracts

description: Google Docs versions of most of the PDFs can be found on https://linktr.ee/tethersurvey

 

Additionally, a survey data visualizer is found on https://tether-survey.onrender.com/
DOI: 10.5281/zenodo.10813103
title: QUALITATIVE STUDY OF THE FLOUNDER MUSCLE AFTER AMPUTATION IN PATIENTS WITH CRITICAL LOWER LIMB ISCHEMIA ON THE BACKGROUND OF DIABETES MELLITUS
DOI: 10.5281/zenodo.10813102
title: QUALITATIVE STUDY OF THE FLOUNDER MUSCLE AFTER AMPUTATION IN PATIENTS WITH CRITICAL LOWER LIMB ISCHEMIA ON THE BACKGROUND OF DIABETES MELLITUS
DOI: 10.5281/zenodo.8412939
title: Voltage controlled iontronic switches: a computational method to predict electrowetting in hydrophobically gated nanopores

description: Folder with numbered names ("0", "0.1", "n0.5") have the data from restrained molecular dynamics (".dat") and some trajectories (".xyz") at the applied voltage corresponding to the name of the folder.  "n" in the folder name correspond to the negative voltages.

Folders "wetting" and "drying" contain the data used to compute the wetting and drying rates at different applied voltages using Molecular Dynamics.
DOI: 10.5281/zenodo.8412938
title: Voltage controlled iontronic switches: a computational method to predict electrowetting in hydrophobically gated nanopores

description: Folder with numbered names ("0", "0.1", "n0.5") have the data from restrained molecular dynamics (".dat") and some trajectories (".xyz") at the applied voltage corresponding to the name of the folder.  "n" in the folder name correspond to the negative voltages.

Folders "wetting" and "drying" contain the data used to compute the wetting and drying rates at different applied voltages using Molecular Dynamics.