cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2598755
title: BrainIAK Tutorials: Condensed Datasets

description: This is a collection of datasets used by BrainIAK tutorials. These datasets are pre-processed and ready to use. They have been condensed, by reducing the number of subjects from the original studies, to keep the file size small. Each tutorial is paired with a dataset as listed below. The file brainiak_datasets.zip contains the data for all the tutorials, and in unzipped form uses 18GB of space. If you wish to download data for specific tutorials, use the list below to find the correct dataset to download and use.

Tutorial 2:  VDC (Kim et al., 2017) and 02-data-handling (this is a simulated dataset)

Tutorials 3-5: VDC  (Kim et al., 2017)

Tutorial 6: Ninety Six (Kriegeskorte et al., 2008)

Tutorials 7: Face-scene (Turk-Browne et al., 2012). The script for within subject searchlight uses the VDC dataset.

Tutorial 9: Face-scene (Turk-Browne et al., 2012)

Tutorial 8: Latatt (Hutchinson et al., 2016)

Tutorial 10: Pieman2 (Simony et al., 2016)

Tutorial 11: Raider (Haxby et al., 2011) and Pieman2 (Simony et al., 2016)

Tutorial 12: Sherlock_processed (Chen et al., 2017)
description: {"references": ["Kim, G., Norman, K. A., & Turk-Browne, N. B. (2017). Neural Differentiation of Incorrectly Predicted Memories. The Journal of Neuroscience, 37(8), 2022-2031. doi:10.1523/jneurosci.3272-16.2017", "Kriegeskorte, N., Mur, M., Ruff, D. A., Kiani, R., Bodurka, J., Esteky, H., \u2026 Bandettini, P. A. (2008). Matching Categorical Object Representations in Inferior Temporal Cortex of Man and Monkey. Neuron, 60(6), 1126\u20131141. https://doi.org/10.1016/j.neuron.2008.10.043", "Turk-Browne, N. B., Simon, M. G., & Sederberg, P. B. (2012). Scene Representations in Parahippocampal Cortex Depend on Temporal Context. Journal of Neuroscience, 32(21), 7202\u20137207. https://doi.org/10.1523/JNEUROSCI.0942-12.2012", "Hutchinson, J. B., Pak, S. S., & Turk-Browne, N. B. (2016). Biased Competition during Long-term Memory Formation. Journal of Cognitive Neuroscience, 28(1), 187\u2013197. https://doi.org/10.1162/jocn_a_00889", "Haxby, J. V., Guntupalli, J. S., Connolly, A. C., Halchenko, Y. O., Conroy, B. R., Gobbini, M. I., \u2026 Ramadge, P. J. (2011). A common, high-dimensional model of the representational space in human ventral temporal cortex. Neuron, 72(2), 404\u2013416. https://doi.org/10.1016/j.neuron.2011.08.026", "Chen, J., Leong, Y. C., Honey, C. J., Yong, C. H., Norman, K. A., & Hasson, U. (2017). Shared memories reveal shared structure in neural activity across individuals. Nature Neuroscience, 20(1), 115\u2013125. https://doi.org/10.1038/nn.4450", "Simony, E., Honey, C. J., Chen, J., Lositsky, O., Yeshurun, Y., Wiesel, A., & Hasson, U. (2016). Dynamic reconfiguration of the default mode network during narrative comprehension. Nature Communications, 7, 12141. https://doi.org/10.1038/ncomms12141"]}
DOI: 10.17632/mv52ykks6x.1
title: Dual Sensing of Physiologic pH and Calcium by EFCAB9 Regulates Sperm Motility

description: Raw data files for western blots and gel staining.
DOI: 10.5519/qd.2naa7lgy
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (209 records)
DOI: 10.17632/4rrk89c3b2.2
title: TRTH JSE AGLJ.J Intraday Transaction Test Data

description: An example of TRTH intraday top-of-book transaction data for a single Johannesburg Stock Exchange (JSE) listed equity. The data is for teaching, learning and research projects sourced from the legacy Tick History v1 SOAP API interface from https://tickhistory.thomsonreuters.com/TickHistory in May 2016. Related raw data and similar data-structures can now be accessed using Tick History v2 and the REST API https://hosted.datascopeapi.reuters.com/RestApi/v1. Configuration control: the test dataset contains 16 CSV files with names: "__TO_.CSV" e.g. AGLJ_J_02-Jan-2014_TO_29-May-2014.csv Attributes: The data set is for the ticker: AGLJ.J from May 2010 until May 2016. The files include the following attributes: RIC, Local Date-Time, Event Type, Price at the Event, Volume at the Event, Best Bid Changes, Best Ask Changes, and Trade Event Sign: RIC, DateTimeL, Type, Price, Volume, L1 Bid, L1 Ask, Trade Sign. The Local Date-Time (DateTimeL) is a serial date number where 1 corresponds to Jan-1-0000, for example, 736333.382013 corresponds to 4-Jan-2016 09:10:05 (or 20160104T091005 in ISO 8601 format). The trade event sign (Trade Sign) indicates whether the transaction was buyer (or seller) initiated as +1 (-1) and was prepared using the method of Lee and Ready (2008). Disclaimer: The data is not up-to-date, is incomplete, it has been pre-processed; as such it is not fit for any other purpose than teaching and learning, and algorithm testing. For complete, up-to-date, and error-free data please use the Tick History v2 interface directly. Research Objectives: The data has been used to build empirical evidence in support of hierarchical causality and universality in financial markets by considering price impact on different time and averaging scales, feature selection on different scales as inputs into scale dependent machine learning applications, and for various aspects of agent-based model calibration and market ecology studies on different time and averaging scales. Acknowledgements to: Diane Wilcox, Dieter Hendricks, Michael Harvey, Fayyaaz Loonat, Michael Gant, Nicholas Murphy and Donovan Platt.
DOI: 10.17632/7wby5jtxdm.3
title: decent work and employees' innovative behaviour

description: This data set is a revised version of the earlier published one entitled as V1 and V2. Several variables are dropped and the structural models are made more parsimonious. The data set contains 529 supervisor-employee dyads collected from XL, a large state holding company group with over 20 independent business units. The data is used to test the effects of Decent Work (DW) on Employees' Innovative Behaviour (EIB) through multiple mediation of Job Self-Efficacy (JSE), Intrinsic Motivation (IM), and Work Engagement (WE). SEM analysis tested that DW promotes EIB through two paths: the "expertise & self-efficacy" path and the "intrinsic motivation & engagement path". Along the former path, DW promotes EIB via mediation of JSE, with education (EDU) and company tenure (TENURE) conducive to JSE. Along the latter path, decent work promotes EIB via the serial partial mediation of IM and WE. The uploaded data set contains demographic data of the correspondents, value of each manifest items of the variable measures, and processed (e.g. by summation or average) value of variable measures. Following Farmer, Tierney, and Kung-Mcintyre (2003, p. 623), we created three manifest indicators for each latent variable by randomly assigning items to composites to reduce the parameters assessed, thus improving the ratio between sample size and estimator. Thus, for the rearranged manifest items, the letter "r" was added to the end of its variable name. In other words, items ended with "r" are inputs of SEM analysis. Along with the original dataset, we've also uploaded the data coding and major AMOS working models of the SEM analysis. Reviewers can reproduce results by directly running the models with AMOS. For quick reviewers who have not installed AMOS or feel bothered to run the software by themselves, the author also uploaded the AMOS output of hypotheses testing pasted in word documents.
DOI: 10.17632/cw8bp2xvtv.2
title: Dataset: Interpretation bias and contamination-based obsessive-compulsive symptoms influence emotional intensity related to disgust and fear
DOI: 10.17632/k7ccp7zcjj.1
title: A Novel N-terminal Peptide of Thermostable Endo-1,4-glucanase Purified from T. viride
DOI: 10.17632/6c25gnptbh.1
title: A Study of "Acetylation of spliceosome protein PHF5A modulates stress responses and colorectal carcinogenesis through alternative splicing mediated upregulation of KDM3A", Wang et al

description: The process utilized by cancer cells for adapting to cellular stress is a key point for carcinogenesis. Alternative pre-mRNA splicing induced post-transcriptional gene expression regulation is one of the pathways for tumors maintaining proliferation rates accompanying the malignant phenotype under stress. However, the protein post-translational modification, especially protein acetylation on pre-mRNA splicing processes under stress is unknown. Here, we uncovered a list of hyperacetylated proteins in the context of acutely reduced Acetyl-CoA levels under nutrient starvation. PHD finger-like domain-containing protein 5A (PHF5A/SF3b14b), a component of U2 snRNPs, can be acetylated at lysine 29 in response to multiple cellular stresses which is dependent on p300. PHF5A acetylation strengthens the interaction among U2 snRNPs and affects global pre-mRNA splicing pattern and extensive gene expression. PHF5A hyperacetylation induced alternative splicing stabilizes KDM3A mRNA and promotes its protein expression. Pathologically, PHF5A K29 hyperacetylation and KDM3A upregulation axis are correlated with poor prognosis of colon cancer patients. Our findings uncovered a novel mechanism of anti-stress pathway that acetylation on PHF5A promotes the cancer cells capacity for stress resistance and consequently contributes to colon carcinogenesis. Raw data for "Acetylation of spliceosome protein PHF5A modulates stress responses and colorectal carcinogenesis through alternative splicing mediated upregulation of KDM3A"
DOI: 10.17632/fy6mvzg9rs.2
title: Application of value stream mapping for optimization of milk reception operations: A case study

description: This data illustrate that value stram mapping (VSM) has been successfully implemented in a dairy manufacturing environment, as an efficient optimization technique towards a Lean manufacturing.
DOI: 10.17632/y5kdzmzj7b.1
title: Data for nutritional knowledge and practice among patients with non-communicable diseases attending Mbale Regional Referral Hospital in Eastern Uganda

description: This dataset is obtained from a study that aimed at assessing nutrition knowledge and practices among NCD patients attending Mbale Regional Referral hospital. From the data presented, most respondents were female (n= 157, 60.4%) and majority (n=138, 53.1%) were in the age group of 35-59 years. The mean age was 55 years (SD= 14) and a range of 19 to 90. Most respondents (n=156, 60%) had a high level of nutrition knowledge, however only 48.8% (n=127) were utilizing the knowledge. Hospital was the main source of nutrition information (n=243, 23. 1%). Patients who had attained secondary level of education were 2.308 more likely to utilize the nutrition knowledge than those who had never studied p value of 0.028, 95CI (1.093-4.874). Those with tertiary education were even 9.261 times more likely to utilize the knowledge. Those with adequate knowledge were about 1.6 times most likely to utilize the nutrition knowledge compared to those with inadequate knowledge level, though the results were not statistically significant, p value 0.098. The data can be used to show the association between nutritional knowledge, level of education, utilization of the knowledge among patients with NCDs. It can also be very vital in policy formulation. From the current dataset, NCD patients had adequate knowledge, with a few of them utilizing the knowledge and high education level was associated with better nutrition practices.
DOI: 10.17632/5d3h9dwpzs.1
title: 10X Genonics Drop-seq single-cell RNA-seq of neonatal (P1.5) testis cells from mice treated with DMSO or Retinoic Acid.

description: To reveal distinct transcriptomes associated with response of neonatal prospermatogonia to retinoic acid (RA), unselected testis cells from animals treated with RA or DMSO were used for Drop-Seq analysis 12 hours after treatment at P1. Unselected testis cells isolated from animals 12hr after treatment with DMSO or RA at midnight of P1 were used for this study. Two replicate experiments were performed using testes pooled from separate litters. Data are from a total of 34,153 cells. The data from these experiments are stored in Loupe Cell Browser files (.cloupe) which are generated during analysis of 10X Genomics Single-cell data and can be opened and queried with the Loupe Cell Browser (10X Genomics). This software can be downloaded for free from https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest. It is important to note that the companion manuscript for these data used additional analyses that are not represented in these files.
DOI: 10.5281/zenodo.2677911
title: cldf-datasets/phoible: PHOIBLE 2.0.1 as CLDF dataset

description: The data of PHOIBLE as CLDF StructureDataset. Cite as: Moran, Steven & McCloy, Daniel (eds.) 2019. PHOIBLE. Jena: Max Planck Institute for the Science of Human History. (Available online at https://phoible.org)
DOI: 10.5286/isis.e.rb1970001
title: Magnetic ground state of Jeff = 0 Mott insulator Ag3LiRu2O6 under pressure

description: Honeycomb ruthenates (Ru4+, 4d4) with strong spin-orbit coupling are expected to display unconventional magnetic ground state like spin-nematic or spin-liquid. The hitherto-known honeycomb ruthenate Li2RuO3 is, however, known to have a spin-singlet dimerized state where spin-orbit coupling is inactive. By using soft-chemical reaction, we obtained silver-intercalated Ag3LiRu2O6 which does not show dimerization in the Ru honeycomb lattice. Ag3LiRu2O6 shows a Van-Vleck-like paramagnetic susceptibility as expected for the d4 system with spin-orbit coupling. By applying pressure of ~0.5 GPa, Ag3LiRu2O6 shows a change of magnetic ground state and the magnetic susceptibility under pressure looks like a behavior of spin-liquid. To unveil the magnetic ground state under pressure, we propose to perform muon spin relaxation measurements under pressure.
DOI: 10.5286/isis.e.rb1970001-1
title: Magnetic ground state of Jeff = 0 Mott insulator Ag3LiRu2O6 under pressure

description: Honeycomb ruthenates (Ru4+, 4d4) with strong spin-orbit coupling are expected to display unconventional magnetic ground state like spin-nematic or spin-liquid. The hitherto-known honeycomb ruthenate Li2RuO3 is, however, known to have a spin-singlet dimerized state where spin-orbit coupling is inactive. By using soft-chemical reaction, we obtained silver-intercalated Ag3LiRu2O6 which does not show dimerization in the Ru honeycomb lattice. Ag3LiRu2O6 shows a Van-Vleck-like paramagnetic susceptibility as expected for the d4 system with spin-orbit coupling. By applying pressure of ~0.5 GPa, Ag3LiRu2O6 shows a change of magnetic ground state and the magnetic susceptibility under pressure looks like a behavior of spin-liquid. To unveil the magnetic ground state under pressure, we propose to perform muon spin relaxation measurements under pressure.
DOI: 10.5286/isis.e.rb1910201
title: Jump diffusion of small molecules in polymers  influence of grafting on the mechanism of diffusion.

description: The concept of diffusion of light gases through polymers is a widely used in a variety of commercially available materials - food packaging materials, solar cell encapsulants, industrial separation membranes - with the entire field relying on the assumption that different polymers transport gases at different rates through them. The entire field rests upon the idea that diffusion of gases through polymers operate through a jump diffusion mechanism and by tuning the chemistry of the system, you can alter this and therefore alter the macroscopic diffusion coefficient. Our work aims to show that nanocomposites can solve problems faced by more traditional membranes (loss of function with time, brittleness .etc.) while simultaneously providing an experimental technique to probe the mechanism and measure microscopic diffusion parameters, thus providing a new framework for separation membranes.
DOI: 10.15468/100
title: Test DataCite 12 dataset
DOI: 10.5281/zenodo.2677936
title: Oceanic melt/calving model

description: This archive contains the code and model outputs used to produce the manuscript "How oceanic<br>
melt controls tidewater glacier evolution" submitted to Geophysical Research Letters.
DOI: 10.5281/zenodo.2677937
title: Oceanic melt/calving model

description: This archive contains the code and model outputs used to produce the manuscript "How oceanic<br>
melt controls tidewater glacier evolution" submitted to Geophysical Research Letters.
DOI: 10.5281/zenodo.2677940
title: Testing Selectivity of USP5 Zf-UBD Analogues with SPR Assay

description: A surface plasmon resonance (SPR) assay is used to determine binding affinities of commercial compound analogues against the zinc finger ubiquitin binding domain (Zf-UBD) of USP5 and test for selectivity against HDAC6 Zf-UBD
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.2677941
title: Testing Selectivity of USP5 Zf-UBD Analogues with SPR Assay

description: A surface plasmon resonance (SPR) assay is used to determine binding affinities of commercial compound analogues against the zinc finger ubiquitin binding domain (Zf-UBD) of USP5 and test for selectivity against HDAC6 Zf-UBD
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.25345/c53s6n
title: MassIVE MSV000083756 - Extraction conditions benchmarking dataset
title: Generated by the Dorrestein lab, it consists of  4 samples extracted with different solvent or ratios of solvent.
DOI: 10.15139/s3/z1ucpi
title: Monmouth University West Virginia Poll, Number 176

description: This survey was conducted among likely voters in West Virginia 3rd Congressional District.
DOI: 10.15472/vjvreh
title: Lista de macroinvertebrados acuáticos en la quebrada Piedra Candela, en la altillanura plana del Meta

description: Se presenta el listado de los macroinvertebrados acuáticos presentes en la Microcuenca de la Quebrada Piedra Candela, en la altillanura plana del departamento del Meta. Estos organismos se encuentran representados por 14 órdenes, 33 familias y 62 morfoespecies.
DOI: 10.17861/0b1f7785-73c6-4d28-9004-90c1ea42a4cf
title: Dataset for Phase stability and thermoelectric properties of TiCoSb-TiM2Sn (M = Ni, Fe) Heusler composites
DOI: 10.21227/aa8c-9221
title: Road Vehicle Detection and Classification Using Magnetic Field Measurement

description: This paper presents a road vehicle recognition and classification approach for intelligent transportation systems. This approach uses a roadside installed low cost magnetometer and associated data collection system. The system measures the magnetic field changing, detects passing vehicles and recognizes vehicle types. We introduce Mel Frequency Cepstral Coefficients (MFCC) to analyze vehicle magnetic signals and extract it as vehicle feature with the representation of cepstrum, frame energy, and gap cepstrum of magnetic signals. We design a 3-dimensional map algorithm using Vector Quantization (VQ) to classify vehicle magnetic features to 4 typical types of vehicles in Australian suburbs: sedan, van, truck, and bus. In order to train an accurate classifier, training samples are selected using Dynamic Time Warping (DTW). Verification experiments show that our approach achieves a high level of accuracy for vehicle detection and classification.
DOI: 10.5281/zenodo.2677648
title: SSD2 tools for Chemical Contaminants Occurrence Data

description: Member States and other stakeholders can submit their chemical contaminants occurrence data using the EFSA tools created for this purpose.

Tools are structured in accordance with the SSD2 guidance and provide features that support manual data entry.<br>
Please read the instructions before using the tools.

<strong>This version replaces version 4 to include the mapping tool for reporting contaminants data in SSD2 and the instructions for the mapping tool.</strong>
description: EU; en; XLSX; data.collection@efsa.europa.eu
DOI: 10.5281/zenodo.2670022
title: SSD2 tool for Veterinary Medicinal Product Residues Occurrence Data

description: Member States and other stakeholders can submit their Veterinary Medicinal Product Residues (VMPR) occurrence data using the EFSA mapping tool created for this purpose.

Tools are structured in accordance with the SSD2 guidance and provide features that support manual data entry.Further details of reporting requirements can be found in the guidance ‘Chemical Monitoring Reporting Guidelines (SSD2)’

Please read the instructions before using the tools.

<strong>This version replaces version 1 to fix a bug in the mapping tool.</strong>
description: EU; en; XLSX; data.collection@efsa.europa.eu
DOI: 10.5281/zenodo.2670023
title: SSD2 tool for Veterinary Medicinal Product Residues Occurrence Data

description: Member States and other stakeholders can submit their Veterinary Medicinal Product Residues (VMPR) occurrence data using the EFSA mapping tool created for this purpose.

Tools are structured in accordance with the SSD2 guidance and provide features that support manual data entry.Further details of reporting requirements can be found in the guidance ‘Chemical Monitoring Reporting Guidelines (SSD2)’

Please read the instructions before using the tools.
description: EU; en; XLSX; data.collection@efsa.europa.eu
DOI: 10.6073/pasta/b631500e5922a2daef60977afbe4deb0
title: Hubbard Brook Experimental Forest: Soil respiration in mycorrhizal gradient plots

description: Soil respiration is the dominant pathway by which terrestrial carbon
  enters the atmosphere. Many abiotic and biotic processes can influence
  soil respiration, including soil microbial community composition.
  Mycorrhizal fungi are a particularly important microbial group to
  investigate because they are known to influence soil chemistry and
  nutrient cycling, and, because the type of mycorrhizal fungi in an
  ecosystem can be assessed based on the plant species present, they may
  be easier than other soil microbes to incorporate into ecosystem
  models. We tested how the type of mycorrhizal fungi—arbuscular (AM) or
  ectomycorrhizal (ECM) fungi—associated with the dominant tree species
  in a mixed hardwood forest was related to soil respiration rate. We
  measured soil respiration, root biomass and surface area, and soil
  chemical and physical characteristics during the growing season in
  plots dominated by ECM-associated trees, AM-associated trees, and
  mixtures with both at Hubbard Brook Experimental Forest in Woodstock,
  NH, USA. We found rates of soil respiration that were 29% and 32%
  higher in AM plots than in ECM and mixed plots, respectively. These
  differences were primarily explained by corresponding variation in
  soil conditions including organic horizon depth and soil nitrogen
  content. Soil in AM plots had slightly higher nitrogen concentrations
  and deeper organic horizons than soil in ECM and mixed plots. Our
  results highlight the importance of considering mycorrhizal
  associations of dominant vegetation as predictors of carbon cycling
  processes.

      
  These data were gathered as part of the Hubbard Brook Ecosystem Study
  (HBES). The HBES is a collaborative effort at the Hubbard Brook
  Experimental Forest, which is operated and maintained by the USDA
  Forest Service, Northern Research Station.