cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2tfah2
title: Occurrence Download

description: A dataset containing 8133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anredera cordifolia (Ten.) Steenis"
 ]
}

 The dataset includes 8133 records from 220 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002393-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nvd9u
title: Occurrence Download

description: A dataset containing 6844 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hedychium coronarium J.Koenig",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6844 records from 262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038878-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbrsjl
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stizophyllum Miers",
 "DatasetKey is Naturalis Biodiversity Center (NL) - Botany Utrecht"
 ]
}

 The dataset includes 17 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016636-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z6fbnt
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyphostemma chloroleucum (Welw. ex Baker) Desc. ex Wild & R.B.Drumm."
 ]
}

 The dataset includes 31 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015314-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ythsd9
title: Occurrence Download

description: A dataset containing 1550 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hedychium flavescens Carey ex Roscoe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1550 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038879-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yy37h3
title: Occurrence Download

description: A dataset containing 1063081 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fraxinus excelsior L."
 ]
}

 The dataset includes 1063081 records from 2659 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015329-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rng4qf
title: Occurrence Download

description: A dataset containing 300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hypocaccus lucidulus (J.L.LeConte, 1851)"
 ]
}

 The dataset includes 300 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196885-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yepntr
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum hildebrandtii Rchb.f."
 ]
}

 The dataset includes 71 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062580-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tym6aw
title: Occurrence Download

description: A dataset containing 44014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhynchospora corniculata (Lam.) A.Gray, Zizaniopsis microstachya (Nees ex Trin.) Döll & Asch., Zizaniopsis miliacea (Michx.) Döll & Asch., Zizaniopsis villanensis Quarín, Zizaniopsis bonariensis (Balansa & Poitr.) Speg., Zizaniopsis killipii Swallen, Abolboda pulchella Bonpl., Acisanthera bivalvis (Aubl.) Cogn., Acisanthera fluitans Cogn., Acisanthera inundata (DC.) Triana, Acisanthera limnobios (DC.) Triana, Acisanthera nana Ule, Acmella ciliata (Kunth) Cass., Acmella paniculata (Wall. ex DC.) R.K.Jansen, Acmella uliginosa (Sw.) Cass., Acorus calamus L., Acorus gramineus Aiton, Acroceras macrum Stapf, Aeschynomene americana L., Aeschynomene aspera L., Aeschynomene ciliata Vogel, Aeschynomene denticulata Rudd, Aeschynomene elegans Schltdl. & Cham., Aeschynomene evenia C.Wright, Aeschynomene filosa Mart. ex Benth., Aeschynomene fluitans Peter, Aeschynomene fluminensis Vell., Aeschynomene indica L., Aeschynomene montevidensis Vogel, Aeschynomene pratensis Small, Aeschynomene rudis Benth., Aeschynomene selloi Vogel, Aeschynomene sensitiva Sw., Aeschynomene virginica (L.) Britton, Sterns & Poggenb., Aglaodorum griffithii (Schott) Schott, Agrostis bourgeaei E.Fourn., Agrostis breviculmis Hitchc., Agrostis kolymensis Kuvaev & A.P.Khokhr., Agrostis lachnantha Nees, Agrostis lenis Roseng., Agrostis perennans (Walter) Tuck., Agrostis platensis Parodi, Agrostis stolonifera L., Agrostis trichodes (Kunth) Roem. & Schult., Albidella nymphaeifolia (Griseb.) Pichon, Aldrovanda vesiculosa L., Alisma canaliculatum A.Braun & C.D.Bouché, Alisma gramineum Lej., Alisma lanceolatum With., Alisma nanum D.F.Cui)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 44014 records from 722 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151538-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfvf6w
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stenocaris minor (Scott T., 1893)"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132972-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.onynex
title: Occurrence Download

description: A dataset listing the 20234 species recorded in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Apidae",
 "TaxonKey is Halictidae",
 "TaxonKey is Megachilidae",
 "TaxonKey is Andrenidae",
 "TaxonKey is Colletidae"
 ]
}

 The dataset's 20234 records were derived from 1115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009974-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kcud67
title: Occurrence Download

description: A dataset containing 43539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mustela nivalis Linnaeus, 1766",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is less than or equal to 2022"
 ]
}

 The dataset includes 43539 records from 408 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179045-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btr783
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Microzooplankton abundance and biomass at station NBP97-03-12-2"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189021-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vv429n
title: Occurrence Download

description: A dataset containing 1291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Loxia curvirostra Linnaeus, 1758",
 "Year 2011-2018"
 ]
}

 The dataset includes 1291 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179021-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjeu8b
title: Occurrence Download

description: A dataset containing 640 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0",
 "License is CC-BY-NC 4.0"
 ]
 },
 "TaxonKey is Potamotrygon motoro (Müller & Henle, 1841)"
 ]
}

 The dataset includes 640 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0329085-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x73vxm
title: Occurrence Download

description: A dataset containing 338946 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ipomoea L."
 ]
}

 The dataset includes 338946 records from 1101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204016-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5rh9a
title: Occurrence Download

description: A dataset containing 2228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Amphibiens et Reptiles de France (Enquête 2)",
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862",
 "TaxonKey is Triturus cristatus"
 ]
}

 The dataset includes 2228 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058510-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jz7zx4
title: Occurrence Download

description: A dataset containing 422277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 40.0",
 "DecimalLatitude is less than or equal to 45.0",
 "DecimalLongitude is greater than or equal to -115.0",
 "DecimalLongitude is less than or equal to -110.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 422277 records from 263 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058470-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15587092
title: Supplementary Material for "Transient Performance of a Commercial Photovoltaic Panel integrated with a Bio-Based Phase Change Material: a Numerical Study"

description: Supplementary material for the paper "Transient Performance of a Commercial Photovoltaic Panel integrated with a Bio-Based Phase Change Material: a Numerical Study". Published at Solar Energy Volume 305, February 2026, 114237. https://doi.org/10.1016/j.solener.2025.114237.
DOI: 10.5281/zenodo.15587091
title: Supplementary Material for "Transient Performance of a Commercial Photovoltaic Panel integrated with a Bio-Based Phase Change Material: a Numerical Study"

description: Supplementary material for the paper "Transient Performance of a Commercial Photovoltaic Panel integrated with a Bio-Based Phase Change Material: a Numerical Study". Published at Solar Energy Volume 305, February 2026, 114237. https://doi.org/10.1016/j.solener.2025.114237.
DOI: 10.25850/nioz/7b.b.ud
title: NIOZ fyke programme Stuifdijk

description: The Royal NIOZ collects data on the Wadden Sea fish community using traditional fixed gear at a specific location (Lat 52.997N, Long 4.775E) since 1960. The fixed gear is known as a 'kom-fyke' and is a passive fish trap consisting of a 200-m net running from the beach towards deeper waters (the stretched mesh size is 20 mm). This net guides migrating fish towards 2 chambers / traps and into a fyke where they can be collected. The catch is collected each day in spring (late March to early July) and in fall (late August to early November) and netting is removed in the summer (due to algae) and winter (due to storms). This data summarises the catch information as seasonal catch per unit effort (total numbers of fish caught per season, divided by the total number of fishing days in the season), for each year 1980-2019. Seasons are spring and fall, as defined above. NB Dec 2025: datafile was corrected to include a larger period of years, two fyke locations (1 = Stuifdijk and 3 = Schanserwaard), and a data correction due to earlier errors.
DOI: 10.18150/lmcgfi
title: Microorganisms population and ruminal parameters after zeolites supplementation in Jersey cows

description: Zeolites are ‘magic stones’ with crystalline structures and unique properties, which enable them to selectively adsorb molecules, including gases. The aim of the study was to deter-mine the effect of different types and doses of zeolites on microorganisms, nutrient diges-tion, and methane production in the rumen. The study was conducted on five two-year-old Jersey heifers (350 kg live weight) fistulated to the rumen in a 5 × 5 Latin square design divided into five feeding groups: control (basal diet), ZN2 (+120 g clinoptilolite/d), ZS2 (+120 g ZP-4A zeolite/d), ZN4 (+240 g clinoptilolite/d), and ZS4 (+240 g ZP-4A zeolite/d). During five periods of the experiment, the samples of the ruminal fluid and digesta were taken be-fore and 3 h after feeding. The pH value, bacteria and methanogens populations, as well as short-chain fatty acids (SCFAs) and methane production in the rumen were not affected after zeolite addition (p &gt; 0.05). ZN2 diet decreased the number of total protozoa by 41.2% (p = 0.023) and Entodinium spp. by 51.1% (p = 0.021), while ZS2, ZN4, and ZS4 diets reduced Diplodinium population by 70.5% (p &lt; 0.001) 3 h after feeding in comparison to the control diet. An increased population of Ophryoscolex spp. was noted in ZN2 and ZS4 cow 3 h after feeding (p &lt; 0.001; 0.15 × 104/mL and 0.08 × 104/mL vs. 0.02 × 104/mL) when compared to control animals. Furthermore, ZS4 diet increased ammonia (p = 0.007; 3.97 mM/L vs. 2.27 mM/L), tryptamine (p = 0.014; 0.009 μmol/g vs. 0.007 μmol/g) and 1.7-diaminoheptane (p &lt; 0.001; 0.016 μmol/g vs. 0.006 μmol/g) concentrations in the rumen, while phenylethylamine level was 90.9% higher in ZN4 cows (p = 0.007), in comparison to control, depending on time. To summarise, zeolites may act in a type- and dose-dependent manner on the proto-zoa population and indicators of protein degradation.
DOI: 10.7910/dvn/mxnktm
title: Saudi-SAMBase

description: The 2021 Saudi Social Accounting Matrix (SAM) separates domestic production into 40 activities. Factors are disaggregated into silled labor, unskilled labor, and capital. The household account is divided into 4 representative household groups: Rural and urban households across per capita consumption quintiles. Saudi SAMBase support the improvement of model-based research and policy analysis in Saudi Arabia and allow for more robust cross-country comparisons of national economic structures, especially agriculture-food systems.
DOI: 10.17026/ar/in02hz
title: PAN-00130412 - coin/coin-related, Constantinus I (306-337), nummus

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00130412&lt;/p&gt;
description: Modified: 2025-10-21T10:54:57+02:00
DOI: 10.15468/dl.efpdpt
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((9.67570 52.09124,16.33052 52.09124,16.33052 54.75203,9.67570 54.75203,9.67570 52.09124))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Euborellia annulipes"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058511-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzk8yg
title: Occurrence Download

description: A dataset containing 54759 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "GadmGid is CAN.2_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Hesperiphona vespertina"
 ]
}

 The dataset includes 54759 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058466-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysczzm
title: Occurrence Download

description: A dataset containing 36462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diplotaxis erucoides",
 "HasCoordinate is true"
 ]
}

 The dataset includes 36462 records from 387 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058512-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17960232
title: STAGETOOL-Online_v1.0.0_interface-spec_and_examples

description: STAGETOOL Online v1.0.0: interface specification and example tiles

This archive documents STAGETOOL Online v1.0.0, a public web service for automated analysis of mouse spermatogenesis. STAGETOOL Online performs deep-learning–based staging of seminiferous tubules and classification of epithelial cell types from DAPI-stained mouse testis cross-sections. The deployed models and weights are identical to those described in the original STAGETOOL publication (Endocrinology, 2022); no retraining was performed for this release.

Contents





Interface specification (PDF): input requirements, expected outputs, privacy/retention policy, and versioning.




Example input tiles: representative 1024×1024 px, ×400, DAPI-stained mouse seminiferous tubule cross-sections.




Corresponding outputs: tubule instance masks with stage labels, per-cell class labels, and tabular summaries.



 

Online service (current deployment)





Service URL: https://stagetool.utu.fi




Accepted inputs: single-tile TIFF/PNG/JPEG images at 1024×1024 px, acquired at ×400 magnification.




Retention: uploaded images are deleted within 24 h.




Validation & preprocessing: non-1024×1024 inputs are rejected; 8- and 16-bit grayscale and color TIFFs are supported; all inputs are internally converted to contiguous 3-channel uint8 BGR arrays for inference.




Runtime: public-site inference is CPU-based, typically < 1 min per 1024×1024 tile.



 

Scope and limitations

Whole-testis / whole-slide analyses, protein or gene expression overlays, and knockout model characterization are available on request through collaboration.Intended use: research use on mouse material only. This service is not for clinical or diagnostic purposes.

How to cite

Please cite:





Meikar et al., “STAGETOOL, a Novel Automated Approach for Mouse Testis Histological Analysis,” Endocrinology (2022).




The accompanying Application Note describing STAGETOOL Online (this submission / Zenodo record).



Files

This record contains an interface specification PDF plus example inputs/outputs in separate folders.
DOI: 10.5281/zenodo.17965535
title: STAGETOOL-Online_v1.0.0_interface-spec_and_examples

description: STAGETOOL Online v1.0.0: interface specification and example tiles

This archive documents STAGETOOL Online v1.0.0, a public web service for automated analysis of mouse spermatogenesis. STAGETOOL Online performs deep-learning–based staging of seminiferous tubules and classification of epithelial cell types from DAPI-stained mouse testis cross-sections. The deployed models and weights are identical to those described in the original STAGETOOL publication (Endocrinology, 2022); no retraining was performed for this release.

Contents





Interface specification (PDF): input requirements, expected outputs, privacy/retention policy, and versioning.




Example input tiles: representative 1024×1024 px, ×400, DAPI-stained mouse seminiferous tubule cross-sections.




Corresponding outputs: tubule instance masks with stage labels, per-cell class labels, and tabular summaries.



 

Online service (current deployment)





Service URL: https://stagetool.utu.fi




Accepted inputs: single-tile TIFF/PNG/JPEG images at 1024×1024 px, acquired at ×400 magnification.




Retention: uploaded images are deleted within 24 h.




Validation & preprocessing: non-1024×1024 inputs are rejected; 8- and 16-bit grayscale and color TIFFs are supported; all inputs are internally converted to contiguous 3-channel uint8 BGR arrays for inference.




Runtime: public-site inference is CPU-based, typically < 1 min per 1024×1024 tile.



 

Scope and limitations

Whole-testis / whole-slide analyses, protein or gene expression overlays, and knockout model characterization are available on request through collaboration.Intended use: research use on mouse material only. This service is not for clinical or diagnostic purposes.

How to cite

Please cite:





Meikar et al., “STAGETOOL, a Novel Automated Approach for Mouse Testis Histological Analysis,” Endocrinology (2022).




The accompanying Application Note describing STAGETOOL Online (this submission / Zenodo record).



Files

This record contains an interface specification PDF plus example inputs/outputs in separate folders.
DOI: 10.15468/dl.vzt9v9
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Volachlamys singaporina, Chlamys singaporinus, Mimachlamys singaporinus, Pecten cumingii, Pecten pica, Pecten psarus, Pecten singaporinus)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058513-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kz38bp
title: Occurrence Download

description: A dataset containing 60661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Canada",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is May",
 "OccurrenceStatus is Present",
 "StateProvince is New Brunswick",
 "Year 2023-2023"
 ]
}

 The dataset includes 60661 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058463-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.