cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1049393.10fu
title: SH1049393.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1049395.10fu
title: SH1049395.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.uppfh9
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((41.41642 -30.31981,200.58358 -30.31981,200.58358 33.31981,41.41642 33.31981,41.41642 -30.31981))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sonneratia caseolaris (L.) Engl.",
 "Year 2000-2025"
 ]
}

 The dataset includes 214 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000321-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.96gr2n
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Continent is North America",
 "OccurrenceStatus is Present",
 "TaxonKey is Ovibos moschatus (Zimmermann, 1780)",
 "Year 1990-2025"
 ]
}

 The dataset includes 856 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000322-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prebv5
title: Occurrence Download

description: A dataset containing 814 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chalcorana raniceps (Peters, 1871)"
 ]
}

 The dataset includes 814 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000324-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uz8g2x
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-121.52389 27.58123,-117.36052 27.58123,-117.36052 29.24585,-121.52389 29.24585,-121.52389 27.58123))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Crotalus atrox Baird & Girard, 1853"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000325-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7cgpek
title: Occurrence Download

description: A dataset containing 22606 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Continent is North America",
 "OccurrenceStatus is Present",
 "TaxonKey is Ondatra zibethicus (Linnaeus, 1766)",
 "Year 1990-2025"
 ]
}

 The dataset includes 22606 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000328-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3g2hxd
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bison bison (Linnaeus, 1758)"
 ]
}

 The dataset includes 76 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000326-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.accr4b
title: Occurrence Download

description: A dataset containing 99862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Tanzania, United Republic of",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 99862 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000329-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmee4f
title: Occurrence Download

description: A dataset containing 721928 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "Year is 2008",
 "Month is March"
 ]
}

 The dataset includes 721928 records from 367 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000310-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tyv78
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chiasmocleis mehelyi Caramaschi & Cruz, 1997"
 ]
}

 The dataset includes 71 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000330-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5cz32h65
title: MassIVE MSV000097216 - GNPS-fenziwangluo-GQD-danzhisuan-NEG
title: rat UHPLC-Q-Exactive Orbitrap/MS colon metabolism
DOI: 10.15468/dl.xy8g7c
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chirixalus doriae Boulenger, 1893"
 ]
}

 The dataset includes 232 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000331-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44596g
title: Occurrence Download

description: A dataset containing 11125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crinia georgiana Tschudi, 1838"
 ]
}

 The dataset includes 11125 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000336-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14921082
title: test_upload
DOI: 10.5281/zenodo.14921112
title: test_upload
DOI: 10.5281/zenodo.14927902
title: Mitochondrial phylogeny and novel gene rearrangements in semiaquatic bugs (Hemiptera: Gerroidea)
DOI: 10.15468/dl.tsdgh7
title: Occurrence Download

description: A dataset containing 523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ovis canadensis Shaw, 1804"
 ]
}

 The dataset includes 523 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000340-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jrud4a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rattus rattus alexandrinus)",
 "BasisOfRecord is one of (Human Observation)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1750",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000341-250225214225278/datasets/export for details.
DOI: 10.15468/dl.3cjme5
title: Occurrence Download

description: A dataset listing the 864 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Flora y epífitas presentes en el proyecto Minera de Cobre Quebradona, municipio de Jericó"
 ]
}

 The dataset's 864 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000335-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nawn2
title: Occurrence Download

description: A dataset containing 17833 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crinia glauerti Loveridge, 1933"
 ]
}

 The dataset includes 17833 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000342-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.weucjy
title: Occurrence Download

description: A dataset containing 34258 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Animal Sound Archive"
 ]
}

 The dataset includes 34258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000343-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74ybxx
title: Occurrence Download

description: A dataset containing 81071 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Flora y epífitas presentes en el proyecto Minera de Cobre Quebradona, municipio de Jericó"
 ]
}

 The dataset includes 81071 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000344-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwjpj7
title: Occurrence Download

description: A dataset containing 16590194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cyperaceae"
 ]
}

 The dataset includes 16590194 records from 6837 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000320-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15744220
title: Supporting data for: "Constant-pH simulation of the human β2 adrenergic receptor inactivation"

description: This repository contains trajectories, input files, and analysis scripts associated with the manuscript "Constant-pH simulation of the human β2 adrenergic receptor inactivation".

The data is organised as follow:

- input_files  

Contains folders for each simulated pH condition (pH_4 to pH_9). Each folder includes:





Molecular Dynamics Parameter (MDP) files used for system preparation and production with GROMACS




Topology file (topol.top)




System coordinate file (conf.gro)




Index file (index.ndx)




Force field folder (charmm36-mar2019-cphmd.ff)



- scripts

Example Jupyter notebooks used for analysis:





cl_binding_H93.ipynb: Identification of Cl⁻ binding events on His93




lambda.ipynb: Analysis of lambda values




microswitches.ipynb: Plotting of microswitch data




na_binding.ipynb: Identification of Na⁺ binding events




rmsd.ipynb: RMSD data plotting



- trajectories

Contains folders for each pH condition (pH_4 to pH_9), with subfolders for each of the five replicas (rep1 to rep5). Each replica folder includes:





full.pdb: Full system coordinate file




full.xtc: Full system trajectory file (1000 ps stride)




protein_na.pdb: Coordinate file for protein and Na⁺ ions




protein_na.xtc: Trajectory file for protein and Na⁺ ions (100 ps stride)




step7.edr: Energy file
DOI: 10.5281/zenodo.15744221
title: Supporting data for: "Constant-pH simulation of the human β2 adrenergic receptor inactivation"

description: This repository contains trajectories, input files, and analysis scripts associated with the manuscript "Constant-pH simulation of the human β2 adrenergic receptor inactivation".

The data is organised as follow:

- input_files  

Contains folders for each simulated pH condition (pH_4 to pH_9). Each folder includes:





Molecular Dynamics Parameter (MDP) files used for system preparation and production with GROMACS




Topology file (topol.top)




System coordinate file (conf.gro)




Index file (index.ndx)




Force field folder (charmm36-mar2019-cphmd.ff)



- scripts

Example Jupyter notebooks used for analysis:





cl_binding_H93.ipynb: Identification of Cl⁻ binding events on His93




lambda.ipynb: Analysis of lambda values




microswitches.ipynb: Plotting of microswitch data




na_binding.ipynb: Identification of Na⁺ binding events




rmsd.ipynb: RMSD data plotting



- trajectories

Contains folders for each pH condition (pH_4 to pH_9), with subfolders for each of the five replicas (rep1 to rep5). Each replica folder includes:





full.pdb: Full system coordinate file




full.xtc: Full system trajectory file (1000 ps stride)




protein_na.pdb: Coordinate file for protein and Na⁺ ions




protein_na.xtc: Trajectory file for protein and Na⁺ ions (100 ps stride)




step7.edr: Energy file
DOI: 10.15468/dl.scy0ly
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-99.0018 19.61446,-98.48868 19.61446,-98.48868 20.23743,-99.0018 20.23743,-99.0018 19.61446))",
 "HasCoordinate is true",
 "TaxonKey is Prosopis L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024100-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8hmec
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acrocomia intumescens Drude"
 ]
}

 The dataset includes 30 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100541-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4wg2m
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinapidendron gymnocalyx (Lowe) Rustan",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 43 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006948-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bny5va
title: Occurrence Download

description: A dataset containing 274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 5000.0-1000000.0",
 {
 "or" : [
 "DatasetKey is NEON Biorepository Mosquito Collection (Pinned Vouchers)",
 "DatasetKey is iNaturalist Research-grade Observations"
 ]
 },
 "TaxonKey is Aedes albopictus (Skuse, 1894)"
 ]
}

 The dataset includes 274 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100526-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wrjr2d
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poropanchax luxophthalmus (Brüning, 1929)"
 ]
}

 The dataset includes 132 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024118-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zeud30
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centropogon semperflorens E.Wimm."
 ]
}

 The dataset includes 29 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024116-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujta4w
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Mexico",
 "GadmGid is MEX.16_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lontra longicaudis (Olfers, 1818)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127391-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ofqleb
title: Occurrence Download

description: A dataset containing 6504 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Procnias tricarunculatus (J.Verreaux & E.Verreaux, 1853)",
 "TaxonKey is Prunella collaris whymperi (E.C.S.Baker, 1915)",
 "TaxonKey is Prunella collaris rufilata (Severtzov, 1879)",
 "TaxonKey is Prunella collaris nipalensis (Blyth, 1843)"
 ]
}

 The dataset includes 6504 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024113-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjeqcu
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dactylogyrus extensus Mueller & Van Cleave, 1932)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042045-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86fdu8
title: Occurrence Download

description: A dataset containing 712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eriosoma ulmi (Linnaeus, 1758))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 712 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042044-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.beg74b
title: Occurrence Download

description: A dataset listing the 370 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.39573 46.15289,15.50105 46.15365,15.4995 46.24923,15.39573 46.24759,15.39573 46.15289))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 370 records were derived from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066154-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111139900
title: Zakur Inscription

description: [Text Description:] Stele commemorating miltary victory ❧ [Text or Publication Number Note:] KAI 202; Gibson II:5 ❧ [Excavation Description:] Discovered 1903 in Afis SW of Aleppo ❧ [Medium:] Stone ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Fragmentary basalt stele of 2 m X 29 cm ❧ [Physical Object Note:] Originally in 4 pieces