cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh2650458.08fu
title: SH2650458.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2650459.08fu
title: SH2650459.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2078001.08fu
title: SH2078001.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2078002.08fu
title: SH2078002.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2650460.08fu
title: SH2650460.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2650461.08fu
title: SH2650461.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2650462.08fu
title: SH2650462.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.20066985
title: H5ADs

description: H5AD of the datasets used in Bosi et al. 2022
DOI: 10.26036/cnp0001155
title: CaWRKY40-ChIPseq

description: To further indentify the possible direct target genes of WRKY40, a ChIP-seq was performed by transient overexpression of WRKY40-GFP in leaves of pepper plants challenged with RSHT or RSRT, using non-stressed pepper plants as control. We identified 5766 high confidence WRKY40 binding sites associated with 1434 genes.
DOI: 10.26036/cnp0001156
title: WRKY40 fulfills its function in pepper immunity against RSRT and RSHT

description: To determine genes differentially expressed under pepper plants challenged by RSHT between WT and WRKY40 silencing
DOI: 10.26036/cnp0001119
title: Transcriptome of A. rusticana, B. juncea and W. japonica

description: Coding sequences and protein sequences of A. rusticana, B. juncea and W. japonica
DOI: 10.26036/cnp0002755
title: Bacterial diversity of Xisha Islands surface waters

description: Bacterial community in the overlying water of the coral reef in China’s Xisha Islands
DOI: 10.26036/cnp0002968
title: The 244 Chinese sorghum Genomes Project

description: Chinese sorghum (S. bicolor) has been a historically critical ingredient for brewing famous distilled liquors ever since Yuan Dynasty (749 ~ 652 yr BP). Incomplete understanding of the population genetics and domestication history limits its broad applications, especially the lack of genetics knowledge underlying liquor-brewing properties makes it difficult to establish scientific standards for sorghum breeding. To unravel the domestic history of Chinese sorghum, we re-sequenced 244 Chinese sorghum lines selected from 16 provinces. We found that Chinese sorghums form three distinct genetic sub-structures, referred as the Northern, the Southern, and the Chishui groups, following an obviously geographic pattern. The Chinese sorghums were further characterized in liquor brewing traits and identified selection footprints associated with liquor brewing efficiency. An important selective sweep region identified includes several homologous genes involving in grain size, pericarp thickness, and architecture of inflorescence. Our result also demonstrated that pericarp strength rather than grain size determines the ability of the grains to resist repeated cooking during brewing process. New insight into the traits beneficial to the liquor-brewing process provides both a better understanding on Chinese sorghum domestication and a guidance on breeding sorghum as a multiple use crop in China.
DOI: 10.26036/cnp0001708
title: Genome of scp

description: Genome of scp
DOI: 10.26036/cnp0002802
title: Genome sequencing of Amomum tsao-ko provides novel insight into its medicinal properties

description: Genome sequencing of Amomum tsao-ko provides novel insight into its medicinal properties
DOI: 10.26036/cnp0001842
title: The chromosome-level genome assemblies of two rattans

description: We produced two chromosome-level genome assemblies of C. simplicifolius and D. jenkinsiana using Illumina, Pacific Biosciences, and Hi-C sequencing data.
DOI: 10.26036/cnp0001899
title: Application of protoplast-based system to optimize multiple CRISPR/Cas9 editing tools in Setaria italica

description: Genome editing technologies have been widely applied in various plants for gene function research and genetic improvement. However, high-efficient genome editing tools adopted in Setaria italica are still rare. Here, we developed a protoplast-based system with the deep amplicon sequencing to rapidly test and optimize multiple clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPRassociated protein (Cas9) system for high-efficient genome editing in S. italica. Using this method, the tRNA-based system with endogenous Cas9 expressing cassettes has been screened out as a high-efficient editing tool with 51.23% total mutation frequency that could simultaneously target multiple sites with a mutagenesis frequency of 3.23%. CRISPR/Cas RNP complexes have been also proven to work efficiently in genome editing of S. italica protoplasts. In summary, our protoplast-based system is a convenient and effective way to optimize CRIPR/Cas9 genome editing tools for gene functional research and genetic improvement before stable genetic transformation of S. italica.
DOI: 10.5281/zenodo.6642662
title: Women on sports boards. GESPORT. Database.

description: This database has been built by the authors. The data has been collected from the websites of the national federations of Italy, Portugal, Turkey, Spain and the United Kingdom in 2018. This complements the data base 10.5281/zenodo.6598291.
description: With the support of the Erasmus+ Programme of the European Union 590521-EPP-1-2017-1-ES-SPO-SCP
DOI: 10.5281/zenodo.6642661
title: Women on sports boards. GESPORT. Database.

description: This database has been built by the authors. The data has been collected from the websites of the national federations of Italy, Portugal, Turkey, Spain and the United Kingdom in 2018. This complements the data base 10.5281/zenodo.6598291.
description: With the support of the Erasmus+ Programme of the European Union 590521-EPP-1-2017-1-ES-SPO-SCP
DOI: 10.26036/cnp0003002
title: 单细胞测序

description: 紫锥菊均一多糖抗结直肠癌
DOI: 10.26036/cnp0002459
title: The role of pyruvate kinases in the strawberry fruit development and ripening

description: Pyruvate kinases take part in various biological processes including seed development, flowering, biostress or abiostress resistance. However, the detail role of PKs in the fruit ripening process is still unclear. We identified a cytosolic PK from strawberry plants and investigated the systematical changes of gene expressions via transient overexpression of FaPKc2.2 in the fruits. The results demonstrated the underling genetic mechanism that confers the negative mediation role of FaPKc2.2 in the fruit ripening regulation.
DOI: 10.26036/cnp0002630
title: Rhizosphere bacteriome of the perennial sweet sorghum under field growth

description: In this study, comparative analysis of the bacterial communities in the rhizosphere soils and bulk soils was performed between a perennial sweet sorghum cultivar NaPBS778 (simply N778) and its control lines TP60 and TP213 by 16S ribosomal RNA gene (16S rDNA) V3-V4 variable region amplicon deep sequencing via Illumina MiSeq platform. The obtained sequence information allowed us to assess the impact of the perennial sweet sorghum line on the rhizosphere bacterial communities.
DOI: 10.26036/cnp0002604
title: Transcriptome innovations in primates revealed by single-molecule long-read sequencing

description: Transcriptomic diversity greatly contributes to the fundamentals of disease, lineage-specific biology, and environmental adaptation. However, much of the actual isoform repertoire contributing to shaping primate evolution remains unknown. Here, we combined deep long- and short-read sequencing complemented with mass spectrometry proteomics in a panel of lymphoblastoid cell lines (LCLs) from human, three other great apes, and rhesus macaque, producing the largest full-length isoform catalog in primates to date. Our transcriptomes reveal thousands of novel transcripts, some of them under active translation, expanding and completing the repertoire of primate gene models. Our comparative analyses unveil hundreds of transcriptomic innovations and isoform usage changes related to immune function and immunological disorders. The confluence of these innovations with signals of positive selection and their limited impact in the proteome points to changes in alternative splicing in genes involved in immune response as an important target of recent regulatory divergence in primates.
DOI: 10.26036/cnp0003096
title: Pseudomonas plecoglossicida的鞭毛基因flgL对斜带石斑鱼脾脏代谢物的影响

description: 针对Pseudomonas plecoglossicida的鞭毛基因flgL进行RAN干扰，获得flgL-RNAi菌株，并使用野生型菌株和flgL-RNAi菌株分别对斜带石斑鱼进行感染，对感染后第四天的鱼脾脏进行代谢组分析。
DOI: 10.26036/cnp0003075
title: Single internode transcriptome data of Bambusa multiplex

description: Transcriptome data of the DZ and EZ of third internode with a length of 3cm, 6 cm,15cm.
DOI: 10.26036/cnp0003008
title: Discovery of the effect and underlying mechanism of human interferons on human melanoma

description: This project is exploring the effect and underlying mechanism of human interferon combination against tumors based on wet-lab and transcriptomic techniques.
DOI: 10.26036/cnp0003048
title: Pseudomonas plecoglossicida的鞭毛基因flgK对斜带石斑鱼脾脏转录组的影响

description: 针对Pseudomonas plecoglossicida的鞭毛基因flgK进行RAN干扰，获得flgK-RNAi菌株，并使用野生型菌株和flgK-RNAi菌株分别对斜带石斑鱼进行感染，对感染后第四天的鱼脾脏进行转录组分析。
DOI: 10.26036/cnp0003110
title: Pseudomonas plecoglossicida的鞭毛基因flgL对斜带石斑鱼脾脏转录组的影响

description: 针对Pseudomonas plecoglossicida的鞭毛基因flgK进行RAN干扰，获得flgL-RNAi菌株，并使用野生型菌株和flgL-RNAi菌株分别对斜带石斑鱼进行感染，对感染后第四天的鱼脾脏进行转录组分析。
DOI: 10.26036/cnp0003105
title: 氮循环相关微生物多样性与功能

description: 氮循环相关微生物多样性与功能
DOI: 10.26036/cnp0003112
title: microbial communities of nitrogen cycling

description: nirk nirs nosz nxra nxrb
DOI: 10.26036/cnp0003128
title: The whole genome sequencesand annotation information of YL01 bacterial strain

description: The whole genome sequences and annotation information about YL01, a gossypol-degrading bacterial strain.
DOI: 10.26036/cnp0002967
title: Diet- and time-of-day-dependent regulation of heart and adipose tissue during obesity

description: High-fat diet (HFD) feeding rewires circadian rhythms of feeding behavior and peripheral organs. While the liver has been extensively studied, it remains largely unknown how other peripheral organs adapt their circadian rhythms upon diet-induced obesity and the flexibility towards weight loss after dietary intervention. Here, we took a systems approach to profile diurnal transcriptome of adipose tissue and heart in diet-induced obese mice either put on low-fat diet (LFD) that reduces weight or still fed HFD. We found that diet reversal specifically restores diurnal difference in Clock transcripts in heart and adipose tissue without altering the rhythmicity of other clock genes. Pathway analysis showed that LFD activates mitochondrial energy metabolism and suppresses chronic low-grade metabolic inflammation in the heart. In addition, LFD promotes cell proliferation pathway while inhibiting cell differentiation pathway in adipose tissue. We further profiled neutral lipids by quantitative lipidomics in adipose tissue, and performed transcript-lipid network integration. Remarkably, multi-omics analysis identified three clusters of biological molecules. Cluster 1 is composed of signatures that restore diurnal rhythm upon LFD, including triglyceride hydrolase Ces1d and many triglyceride species. Cluster 2 is composed of molecules that remain largely unaltered, e.g., circadian clock genes. Together, our work defines the circadian and molecular signatures in non-hepatic organs during diet-induced obesity and their flexibility upon dietary intervention.
DOI: 10.25402/fon.20072078.v1
title: Supplementary Tables – The clinical position of ramucirumab-containing regimens for advanced gastric cancer: a review of clinical trial data

description: <strong>Supplementary Table 1. Overview of targeted therapeutics approved for advanced gastric cancer</strong> <strong>Supplementary Table 2: Published real-world studies on ramucirumab-containing regimens in AGC</strong> <br> <strong>Supplementary Table 3. Published clinical studies on ramucirumab-containing regimens in AGC in the first-line setting</strong> <strong>Supplementary Table 4. Published clinical studies on ramucirumab-containing regimens in AGC in the third-line and perioperative settings</strong> <strong>Supplementary Table 5. New and ongoing studies on ramucirumab in advanced gastric cancer (NCT and jRCT databases)</strong>
DOI: 10.25402/fon.20072078
title: Supplementary Tables – The clinical position of ramucirumab-containing regimens for advanced gastric cancer: a review of clinical trial data

description: <strong>Supplementary Table 1. Overview of targeted therapeutics approved for advanced gastric cancer</strong> <strong>Supplementary Table 2: Published real-world studies on ramucirumab-containing regimens in AGC</strong> <br> <strong>Supplementary Table 3. Published clinical studies on ramucirumab-containing regimens in AGC in the first-line setting</strong> <strong>Supplementary Table 4. Published clinical studies on ramucirumab-containing regimens in AGC in the third-line and perioperative settings</strong> <strong>Supplementary Table 5. New and ongoing studies on ramucirumab in advanced gastric cancer (NCT and jRCT databases)</strong>
DOI: 10.5517/ccdc.csd.cc25rylh
title: CCDC 2019017: Experimental Crystal Structure Determination

description: Related Article: Rehan Basta, Atta M. Arif, and Richard D. Ernst|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26y8m2
title: CCDC 2053924: Experimental Crystal Structure Determination

description: Related Article: Chengjian Li, Lijie Ye, Jingwei Sun, Cheng Zhang, Qingbao Song, Kai Wang, Mi Ouyang|2022|Dyes Pigm.|204|110457|doi:10.1016/j.dyepig.2022.110457
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.5006449
title: Visualization of the dataset "Migration, Transnationalism and Social Protection"

description: This document describes the dataset used for the interactive visualization. Original data compiled via a survey with national experts (social policy and migration scholars) across EU27. Experts were asked to consult the national and international legislation regulating migrants’ access to welfare entitlements and provide objective information (as stipulated in the text of the law) regarding the specific eligibility conditions under which individuals can claim different types of benefits. The survey included standardized questions to ensure comparability across countries. Codebook and xml along DDI standard.
description: This file contains all the information allowing the duplication of the results represented in the visualization available here: https://tabsoft.co/3gG6HGa
DOI: 10.5281/zenodo.5006448
title: Visualization of the dataset "Migration, Transnationalism and Social Protection"

description: This document describes the dataset used for the interactive visualization. Original data compiled via a survey with national experts (social policy and migration scholars) across EU27. Experts were asked to consult the national and international legislation regulating migrants’ access to welfare entitlements and provide objective information (as stipulated in the text of the law) regarding the specific eligibility conditions under which individuals can claim different types of benefits. The survey included standardized questions to ensure comparability across countries. Codebook and xml along DDI standard.
description: This file contains all the information allowing the duplication of the results represented in the visualization available here: https://tabsoft.co/3gG6HGa
DOI: 10.6084/m9.figshare.19722520
title: Relative permeability of hydrogen and aqueous brines in sandstones and carbonates at reservoir conditions: Data sets

description: The article describing the data set has been accepted for publication in Geophysical Research Letters.
DOI: 10.5281/zenodo.4327120
title: Support and Opposition to Migration, 2018 Extensions

description: Support and Opposition to Migration. Extension to claims published in the press until December 2018. Data in CSV format, Codebook and metadata along DDI standard.