cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48597/cybf-5a5p
title: Measurement of Sum_ammonia_and_ammonium at Ähtäri

description: Measurement of Sum_ammonia_and_ammonium at Ähtäri
DOI: 10.48597/d5ck-cmnb
title: Measurement of Nitrogen_dioxide at Chopok

description: Measurement of Nitrogen_dioxide at Chopok
DOI: 10.48597/d5uc-2krt
title: Measurement of Inorganics in precipitation at Chopok

description: Measurement of Inorganics in precipitation at Chopok
DOI: 10.48597/dh5q-v5wy
title: Measurement of Sum_ammonia_and_ammonium at Ähtäri

description: Measurement of Sum_ammonia_and_ammonium at Ähtäri
DOI: 10.48597/dn8q-j4rv
title: Measurement of Sulphur_dioxide at Rigi

description: Measurement of Sulphur_dioxide at Rigi
DOI: 10.48597/dr9c-m35g
title: Measurement of Sulphate_total at Rodenberg

description: Measurement of Sulphate_total at Rodenberg
DOI: 10.48597/e86g-mn2w
title: Measurement of Sum_ammonia_and_ammonium at Utö

description: Measurement of Sum_ammonia_and_ammonium at Utö
DOI: 10.48597/eum3-j3kp
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/evb9-wkfu
title: Measurement of Nitrate at Svratouch

description: Measurement of Nitrate at Svratouch
DOI: 10.48597/exby-qjhx
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/f2w7-yxaq
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/ff38-26yn
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/fnbe-c9uj
title: Measurement of Sum_ammonia_and_ammonium at Ähtäri

description: Measurement of Sum_ammonia_and_ammonium at Ähtäri
DOI: 10.48597/fnqd-556j
title: Measurement of Sulphate_total at Rodenberg

description: Measurement of Sulphate_total at Rodenberg
DOI: 10.48597/fwys-s4uy
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/g34b-svzr
title: Measurement of Inorganics in air and particle phase at Chopok

description: Measurement of Inorganics in air and particle phase at Chopok
DOI: 10.48597/gtnp-tpnp
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/h6jh-jetb
title: Measurement of Nitric_acid at Svratouch

description: Measurement of Nitric_acid at Svratouch
DOI: 10.48597/hc9x-x53n
title: Measurement of Sum_ammonia_and_ammonium at Utö

description: Measurement of Sum_ammonia_and_ammonium at Utö
DOI: 10.48597/jew8-d63x
title: Measurement of Nitrate at Kosetice (NOAK)

description: Measurement of Nitrate at Kosetice (NOAK)
DOI: 10.48597/jf8g-562u
title: Measurement of Nitric_acid at Kosetice (NOAK)

description: Measurement of Nitric_acid at Kosetice (NOAK)
DOI: 10.48597/jfbn-z66e
title: Measurement of Sum_ammonia_and_ammonium at Virolahti II

description: Measurement of Sum_ammonia_and_ammonium at Virolahti II
DOI: 10.48597/jh3d-2kvk
title: Measurement of Sulphate_total at Rodenberg

description: Measurement of Sulphate_total at Rodenberg
DOI: 10.48597/jzkf-9gd7
title: Measurement of Nitric_acid at Svratouch

description: Measurement of Nitric_acid at Svratouch
DOI: 10.48597/kayk-jd3j
title: Measurement of Sum_ammonia_and_ammonium at Virolahti II

description: Measurement of Sum_ammonia_and_ammonium at Virolahti II
DOI: 10.5281/zenodo.10728882
title: MMAPLE dataset v1.0

description: Many biological problems are understudied due to experimental limitations and human biases. Although deep learning is promising in accelerating scientific discovery, its power compromises when applied to problems with scarcely labeled data and data distribution shifts. We developed a semi-supervised meta learning framework - Meta Model Agnostic Pseudo Label Learning (MMAPLE) - to address these challenges by effectively exploring out-of-distribution (OOD) unlabeled data when transfer learning fails. The power of MMAPLE is demonstrated in multiple applications: predicting OOD drug-target interactions, hidden human metabolite-enzyme interactions, and understudied interspecies microbiome metabolite-human receptor interactions, where chemicals or proteins in unseen data are dramatically different from those in training data. MMAPLE achieves 11\% to 242\% improvement in the prediction-recall on multiple OOD benchmarks over baseline models. Using MMAPLE, we reveal novel interspecies metabolite-protein interactions that are validated by bioactivity assays and fill in missing links in microbiome-human interactions. MMAPLE is a general framework to explore previously unrecognized biological domains beyond the reach of present experimental and computational techniques.
DOI: 10.5281/zenodo.7915981
title: MMAPLE dataset v1.0

description: Many biological problems are understudied due to experimental limitations and human biases. Although deep learning is promising in accelerating scientific discovery, its power compromises when applied to problems with scarcely labeled data and data distribution shifts. We developed a semi-supervised meta learning framework - Meta Model Agnostic Pseudo Label Learning (MMAPLE) - to address these challenges by effectively exploring out-of-distribution (OOD) unlabeled data when transfer learning fails. The power of MMAPLE is demonstrated in multiple applications: predicting OOD drug-target interactions, hidden human metabolite-enzyme interactions, and understudied interspecies microbiome metabolite-human receptor interactions, where chemicals or proteins in unseen data are dramatically different from those in training data. MMAPLE achieves 11\% to 242\% improvement in the prediction-recall on multiple OOD benchmarks over baseline models. Using MMAPLE, we reveal novel interspecies metabolite-protein interactions that are validated by bioactivity assays and fill in missing links in microbiome-human interactions. MMAPLE is a general framework to explore previously unrecognized biological domains beyond the reach of present experimental and computational techniques.
DOI: 10.5281/zenodo.7915982
title: DESSML dataset v1.0

description: DESSML is a highly data-efficient semi-supervised meta-learning framework to investigate understudied interspecies metabolite-protein interactions (MPI). Knowledge of microbiome-human MPIs is crucial to understand the relationship between microbiome and human physiology and the evolution of an ecosystem. However, our understanding of interspecies MPIs is extremely poor due to experimental limitations. The paucity of experimental data hampers the application of machine learning to MPI predictions. DESSML successfully explores unlabeled data and transfers the information of intraspecies chemical-protein interactions to the interspecies MPI predictions. It achieves three times improvement in the prediction-recall over the baseline model. Using DESSML, we reveal novel MPIs that are validated by bioactivity assays and fill in missing links in microbiome-human interactions. DESSML is a general framework to explore previously unrecognized biological domains beyond the reach of present experimental techniques.
DOI: 10.48597/kbz5-5ekh
title: Measurement of Sum_ammonia_and_ammonium at Ähtäri

description: Measurement of Sum_ammonia_and_ammonium at Ähtäri
DOI: 10.48597/krme-t9gc
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/kyc9-yycf
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/mjc6-gjhc
title: Measurement of Sum_ammonia_and_ammonium at Utö

description: Measurement of Sum_ammonia_and_ammonium at Utö
DOI: 10.48597/mkxh-xafq
title: Measurement of Nitrate at Kosetice (NOAK)

description: Measurement of Nitrate at Kosetice (NOAK)
DOI: 10.48597/nbuk-546d
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/nfz9-rer5
title: Measurement of Sulphate_total at Rodenberg

description: Measurement of Sulphate_total at Rodenberg
DOI: 10.48597/nnbn-hkqe
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/nzvr-z856
title: Measurement of Inorganics in air and particle phase at Chopok

description: Measurement of Inorganics in air and particle phase at Chopok
DOI: 10.48597/p4e9-qetj
title: Measurement of Sum_ammonia_and_ammonium at Utö

description: Measurement of Sum_ammonia_and_ammonium at Utö
DOI: 10.48597/p5eh-wdmb
title: Measurement of Sum_ammonia_and_ammonium at Oulanka

description: Measurement of Sum_ammonia_and_ammonium at Oulanka
DOI: 10.48597/ph4n-h695
title: Measurement of Nitrate at Kosetice (NOAK)

description: Measurement of Nitrate at Kosetice (NOAK)
DOI: 10.48597/phvc-qta7
title: Measurement of Sum_ammonia_and_ammonium at Oulanka

description: Measurement of Sum_ammonia_and_ammonium at Oulanka
DOI: 10.48597/pq4y-mya8
title: Measurement of Sulphur_dioxide at Rigi

description: Measurement of Sulphur_dioxide at Rigi
DOI: 10.48597/ps5g-uun7
title: Measurement of Sum_ammonia_and_ammonium at Virolahti II

description: Measurement of Sum_ammonia_and_ammonium at Virolahti II
DOI: 10.48597/qa4q-yt4w
title: Measurement of Sum_ammonia_and_ammonium at Oulanka

description: Measurement of Sum_ammonia_and_ammonium at Oulanka
DOI: 10.48597/rach-8pt7
title: Measurement of Sum_ammonia_and_ammonium at Utö

description: Measurement of Sum_ammonia_and_ammonium at Utö
DOI: 10.48597/rns5-yjeg
title: Measurement of Sulphur_dioxide at Rigi

description: Measurement of Sulphur_dioxide at Rigi
DOI: 10.34740/kaggle/dsv/7732287
title: BBC News
DOI: 10.48597/rut5-mejg
title: Measurement of Nitrate at Svratouch

description: Measurement of Nitrate at Svratouch
DOI: 10.48597/rzp8-cecp
title: Measurement of Sum_ammonia_and_ammonium at Utö

description: Measurement of Sum_ammonia_and_ammonium at Utö
DOI: 10.48597/s77k-q5ee
title: Measurement of Sum_ammonia_and_ammonium at Virolahti II

description: Measurement of Sum_ammonia_and_ammonium at Virolahti II
DOI: 10.48597/sstf-d7ph
title: Measurement of Sulphate_total at Rodenberg

description: Measurement of Sulphate_total at Rodenberg
DOI: 10.48597/st3b-urc9
title: Measurement of Sulphate_total at Rodenberg

description: Measurement of Sulphate_total at Rodenberg
DOI: 10.48597/t4ry-ufyh
title: Measurement of Nitrate at Svratouch

description: Measurement of Nitrate at Svratouch
DOI: 10.48597/vhcs-k28m
title: Measurement of Nitrate at Svratouch

description: Measurement of Nitrate at Svratouch
DOI: 10.48597/vq4w-ww34
title: Measurement of Sum_ammonia_and_ammonium at Utö

description: Measurement of Sum_ammonia_and_ammonium at Utö
DOI: 10.48597/vrue-5crr
title: Measurement of Sum_ammonia_and_ammonium at Utö

description: Measurement of Sum_ammonia_and_ammonium at Utö
DOI: 10.48597/vuag-736a
title: Measurement of Sulphate_total at Rodenberg

description: Measurement of Sulphate_total at Rodenberg
DOI: 10.48597/w67f-ma56
title: Measurement of Sum_ammonia_and_ammonium at Utö

description: Measurement of Sum_ammonia_and_ammonium at Utö
DOI: 10.48597/w95w-z3ya
title: Measurement of Sum_ammonia_and_ammonium at Utö

description: Measurement of Sum_ammonia_and_ammonium at Utö
DOI: 10.48597/wa25-9xpj
title: Measurement of Nitrogen_dioxide at Chopok

description: Measurement of Nitrogen_dioxide at Chopok
DOI: 10.48597/wycd-qd82
title: Measurement of Sum_ammonia_and_ammonium at Oulanka

description: Measurement of Sum_ammonia_and_ammonium at Oulanka
DOI: 10.48597/xn6k-gmj9
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/xuj8-rzmn
title: Measurement of Inorganics in precipitation at Chopok

description: Measurement of Inorganics in precipitation at Chopok
DOI: 10.48597/ydbx-3sy8
title: Measurement of Sum_ammonia_and_ammonium at Oulanka

description: Measurement of Sum_ammonia_and_ammonium at Oulanka
DOI: 10.48597/yhm6-ryzv
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/yq33-ypmk
title: Measurement of Sum_ammonia_and_ammonium at Virolahti II

description: Measurement of Sum_ammonia_and_ammonium at Virolahti II
DOI: 10.48597/yua8-g9q2
title: Measurement of Susp_part_matter at Rodenberg

description: Measurement of Susp_part_matter at Rodenberg
DOI: 10.48597/z845-xh2a
title: Measurement of Sum_ammonia_and_ammonium at Oulanka

description: Measurement of Sum_ammonia_and_ammonium at Oulanka
DOI: 10.48597/z9vs-xf95
title: Measurement of Sulphate_total at Rodenberg

description: Measurement of Sulphate_total at Rodenberg
DOI: 10.48597/2van-naaa
title: Measurement of Inorganics in precipitation at Velen

description: Measurement of Inorganics in precipitation at Velen
DOI: 10.48597/33xx-8gx8
title: Measurement of Sulphur_dioxide at Kittsee

description: Measurement of Sulphur_dioxide at Kittsee
DOI: 10.48597/36wr-sa75
title: Measurement of Sulphur_dioxide at Wageningen

description: Measurement of Sulphur_dioxide at Wageningen
DOI: 10.48597/3s9w-c4k7
title: Measurement of Sulphate_total at Witteveen

description: Measurement of Sulphate_total at Witteveen
DOI: 10.48597/49fc-nuqv
title: Measurement of Inorganics in precipitation at Jokioinen

description: Measurement of Inorganics in precipitation at Jokioinen
DOI: 10.48597/4ktu-cy89
title: Measurement of Inorganics in precipitation at Westerland

description: Measurement of Inorganics in precipitation at Westerland
DOI: 10.48597/4u4f-7y4v
title: Measurement of Inorganics in precipitation at Jomala

description: Measurement of Inorganics in precipitation at Jomala
DOI: 10.48597/4vhk-jdw7
title: Measurement of Sulphate_total at Kittsee

description: Measurement of Sulphate_total at Kittsee
DOI: 10.48597/5644-66rz
title: Measurement of Inorganics in precipitation at Puumala

description: Measurement of Inorganics in precipitation at Puumala
DOI: 10.48597/5e3c-ttdr
title: Measurement of Inorganics in precipitation at Wageningen

description: Measurement of Inorganics in precipitation at Wageningen
DOI: 10.48597/5mff-u4cv
title: Measurement of Sulphate_total at Dueodde

description: Measurement of Sulphate_total at Dueodde
DOI: 10.48597/5w64-4fgu
title: Measurement of Sulphur_dioxide at Hanstholm

description: Measurement of Sulphur_dioxide at Hanstholm
DOI: 10.48597/5wsa-4gzn
title: Measurement of Sulphate_total at Sibton

description: Measurement of Sulphate_total at Sibton
DOI: 10.48597/6c2w-zd7x
title: Measurement of Sulphur_dioxide at Den Helden

description: Measurement of Sulphur_dioxide at Den Helden
DOI: 10.48597/6sah-2amf
title: Measurement of Sulphate_total at Sodankylä

description: Measurement of Sulphate_total at Sodankylä
DOI: 10.48597/74ta-rrzr
title: Measurement of Inorganics in precipitation at Vert-le-Petit

description: Measurement of Inorganics in precipitation at Vert-le-Petit
DOI: 10.48597/78x7-2myu
title: Measurement of Inorganics in precipitation at Deuselbach

description: Measurement of Inorganics in precipitation at Deuselbach
DOI: 10.48597/7djt-p5nn
title: Measurement of Inorganics in precipitation at Ekeröd

description: Measurement of Inorganics in precipitation at Ekeröd
DOI: 10.48597/7qr4-q83e
title: Measurement of Sulphur_dioxide at Le Barp

description: Measurement of Sulphur_dioxide at Le Barp
DOI: 10.48597/8fz6-nygq
title: Measurement of Sulphur_dioxide at Valduc

description: Measurement of Sulphur_dioxide at Valduc
DOI: 10.48597/8gx4-kydd
title: Measurement of Sulphur_dioxide at Leunen

description: Measurement of Sulphur_dioxide at Leunen
DOI: 10.48597/8qab-z5e2
title: Measurement of pH at Westerland

description: Measurement of pH at Westerland
DOI: 10.48597/aqy7-axbz
title: Measurement of Sulphur_dioxide at Sibton

description: Measurement of Sulphur_dioxide at Sibton
DOI: 10.48597/atfh-2qcu
title: Measurement of Inorganics in precipitation at Schauinsland

description: Measurement of Inorganics in precipitation at Schauinsland
DOI: 10.48597/b269-f9cj
title: Measurement of Sulphur_dioxide at La Crouzille

description: Measurement of Sulphur_dioxide at La Crouzille
DOI: 10.48597/b2sb-kk7a
title: Measurement of Sulphur_dioxide at Færøerne

description: Measurement of Sulphur_dioxide at Færøerne
DOI: 10.48597/berp-6urd
title: Measurement of Inorganics in precipitation at Gniben

description: Measurement of Inorganics in precipitation at Gniben
DOI: 10.48597/bxce-hwbw
title: Measurement of Sulphate_total at Schauinsland

description: Measurement of Sulphate_total at Schauinsland
DOI: 10.48597/c223-nx7x
title: Measurement of Sulphate_total at Ekeröd

description: Measurement of Sulphate_total at Ekeröd
DOI: 10.48597/c5br-23w2
title: Measurement of Inorganics in precipitation at Valduc

description: Measurement of Inorganics in precipitation at Valduc
DOI: 10.48597/ceka-x3b5
title: Measurement of Nitrate at Witteveen

description: Measurement of Nitrate at Witteveen
DOI: 10.48597/chma-sgah
title: Measurement of Sulphur_dioxide at Westerland

description: Measurement of Sulphur_dioxide at Westerland
DOI: 10.48597/cu5t-h3sh
title: Measurement of Sulphate_total at Færøerne

description: Measurement of Sulphate_total at Færøerne
DOI: 10.48597/dpah-w3vu
title: Measurement of Sulphate_total at Little Horkesley

description: Measurement of Sulphate_total at Little Horkesley
DOI: 10.48597/dpbe-tkms
title: Measurement of Sulphate_total at Kittsee

description: Measurement of Sulphate_total at Kittsee
DOI: 10.48597/eczt-4c8w
title: Measurement of Inorganics in precipitation at Ähtäri

description: Measurement of Inorganics in precipitation at Ähtäri
DOI: 10.48597/ejjm-68b8
title: Measurement of Sulphur_dioxide at Grenoble

description: Measurement of Sulphur_dioxide at Grenoble
DOI: 10.15156/bio/sh624720.07fu
title: SH624720.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25549/one-c4-64355
title: Mattachine Society; coordinating council minutes (1953-1954)

description: Mattachine Society, meeting minutes of the coordinating council (1953-1954)
DOI: 10.15156/bio/sh624721.07fu
title: SH624721.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh624722.07fu
title: SH624722.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh624723.07fu
title: SH624723.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh624724.07fu
title: SH624724.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.