cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.x9zqfz
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Finland",
 "Country is Norway",
 "Country is Sweden"
 ]
 },
 "TaxonKey is Eristalis alpina (Panzer, 1797)"
 ]
}

 The dataset includes 61 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262710-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4yyflo
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelyocarpus repens F.Kahn & K.Mejia"
 ]
}

 The dataset includes 234 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000109-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8f938p
title: Occurrence Download

description: A dataset containing 174897 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Harmonised freshwater fish occurrence and abundance data for 12 federal states in Germany"
 ]
}

 The dataset includes 174897 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004551-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwq4ok
title: Occurrence Download

description: A dataset containing 1308 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 {
 "or" : [
 "Country is Mexico",
 "Country is Costa Rica",
 "Country is Nicaragua",
 "Country is El Salvador",
 "Country is Guatemala",
 "Country is Honduras",
 "Country is Peru",
 "Country is Belize",
 "Country is United States of America"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Ficus cotinifolia Kunth",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1308 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015483-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9alqr
title: Occurrence Download

description: A dataset containing 421246 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Cartografía de vegetación a escala de detalle 1:10.000 de la masa forestal de Andalucía"
 ]
}

 The dataset includes 421246 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000109-150304104939900/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88h5yh
title: Occurrence Download

description: A dataset containing 21380969 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nymphalidae"
 ]
}

 The dataset includes 21380969 records from 5542 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059788-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfmjeb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhyssella furanna (Matsumura, 1912)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218647-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5883g
title: Occurrence Download

description: A dataset containing 9191 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hosta Tratt."
 ]
}

 The dataset includes 9191 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051253-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a65whc
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (ff90b050-c256-11db-b71b-b8a03c50a862, 8a471700-4ce8-11db-b80e-b8a03c50a862, 90fd6680-349f-11d8-aa2d-b8a03c50a862, ae447c50-b8a8-11d8-92a4-b8a03c50a862, bc092ff0-02e4-11dc-991f-b8a03c50a862)",
 "TaxonKey is Alamania punicea Lex."
 ]
}

 The dataset includes 39 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006068-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56kmt5
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((-7.76863 42.45725,-3.61006 42.45725,-3.61006 43.586,-7.76863 43.586,-7.76863 42.45725))",
 "PublishingOrg is one of (7338b4d9-d75b-4edb-b238-b09f52397f49, baa855b0-a010-4240-9adf-98c810a6ccf5)",
 "TaxonKey is Lepus castroviejoi Palacios, 1977"
 ]
}

 The dataset includes 137 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273295-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfgm76
title: Occurrence Download

description: A dataset containing 578 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa urssulensis Trin."
 ]
}

 The dataset includes 578 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087848-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqcsnq
title: Occurrence Download

description: A dataset containing 14673 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pulsatrix perspicillata (Latham, 1790)"
 ]
}

 The dataset includes 14673 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051258-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4y3dz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is incertae sedis",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((12.661582 37.597361,12.661547 37.597371,12.661534 37.597341,12.660936 37.597653,12.659429 37.598091,12.658841 37.598079,12.657958 37.598818,12.657405 37.599131,12.657249 37.599776,12.656824 37.600343,12.656315 37.600693,12.656242 37.600835,12.656305 37.601017,12.657052 37.601716,12.654347 37.60285,12.656035 37.605296,12.653833 37.60626,12.6513 37.60765,12.649777 37.608592,12.648623 37.609289,12.647959 37.610284,12.647201 37.611349,12.646274 37.61205,12.644974 37.613068,12.643953 37.613876,12.642375 37.615105,12.640662 37.61633,12.639921 37.616856,12.638395 37.617905,12.636781 37.618845,12.635299 37.619895,12.633671 37.621267,12.633067 37.621759,12.632968 37.622045,12.633078 37.622839,12.63324 37.623454,12.632822 37.62377,12.631804 37.62447,12.631241 37.625106,12.630727 37.6256,12.630668 37.626031,12.630657 37.626391,12.630785 37.626645,12.631005 37.62683,12.631363 37.626981,12.631721 37.627096,12.632207 37.627466,12.632561 37.627725,12.633491 37.628424,12.633821 37.628682,12.634809 37.628862,12.635315 37.628995,12.635939 37.629143,12.636302 37.629073,12.636708 37.629081,12.637242 37.628984,12.63834 37.628614,12.637998 37.628211,12.637669 37.627759,12.637394 37.627068,12.638339 37.626343,12.637826 37.625724,12.637607 37.625331,12.637235 37.624909,12.637576 37.624697,12.637934 37.624591,12.638687 37.624408,12.640174 37.624114,12.640814 37.624138,12.641218 37.624208,12.642009 37.624259,12.64262 37.624111,12.643606 37.623978,12.644298 37.623857,12.645092 37.623698,12.645845 37.623604,12.646275 37.62343,12.646918 37.623075,12.647733 37.622624,12.64844 37.622301,12.648922 37.622119,12.6494 37.622104,12.650307 37.621444,12.65083 37.621048,12.651667 37.620442,12.652294 37.619994,12.652921 37.619546,12.653549 37.61907,12.65465 37.618212,12.654808 37.617937,12.6555 37.617448,12.655667 37.617251,12.655448 37.617166,12.65506 37.617108,12.6536 37.616513,12.654202 37.615305,12.654652 37.614473,12.654961 37.613694,12.654824 37.613589,12.654234 37.612209,12.65396 37.611899,12.654134 37.611749,12.654403 37.611441,12.65596 37.610709,12.657104 37.61022,12.657439 37.609948,12.65827 37.609049,12.65831 37.60901,12.658793 37.608522,12.659032 37.608087,12.65967 37.607516,12.660306 37.607035,12.659989 37.606697,12.659728 37.606377,12.659932 37.605121,12.65963 37.604647,12.658719 37.603562,12.660669 37.603264,12.661815 37.602819,12.662861 37.602623,12.663774 37.602389,12.664835 37.601726,12.664095 37.600812,12.66407 37.600802,12.662359 37.598437,12.661582 37.597361)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028071-230530130749713/datasets/export for details.
DOI: 10.15468/dl.pa2bdn
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wittmackia abbreviata (L.B.Sm. & Proctor) Aguirre-Santoro"
 ]
}

 The dataset includes 35 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006069-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t53u6x
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oberonia japonica (Maxim.) Makino",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 56 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0193982-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ts84z8
title: Occurrence Download

description: A dataset containing 382701 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year 2021-2022"
 ]
}

 The dataset includes 382701 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0364034-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8zazb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is incertae sedis",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((11.861533 44.57823,11.861533 44.578207,11.861523 44.57762,11.858003 44.575786,11.85121 44.57153,11.845077 44.567956,11.838111 44.563745,11.836897 44.562962,11.835543 44.56252,11.833251 44.562128,11.830214 44.561514,11.829435 44.565551,11.829167 44.565897,11.828258 44.570633,11.827216 44.570659,11.817581 44.569891,11.816925 44.573422,11.816975 44.574461,11.816881 44.574879,11.818556 44.575044,11.824279 44.574666,11.832862 44.575572,11.845489 44.576682,11.857283 44.577727,11.858762 44.577893,11.860341 44.578159,11.861533 44.57823)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030181-230530130749713/datasets/export for details.
DOI: 10.15468/dl.htf42e
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craugastor daryi (Ford & Savage, 1984)"
 ]
}

 The dataset includes 77 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188914-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z6hqe7
title: Occurrence Download

description: A dataset containing 1663 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Strix fulvescens (P.L.Sclater & Salvin, 1868)"
 ]
}

 The dataset includes 1663 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051285-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drxdkq
title: Occurrence Download

description: A dataset containing 606630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Veronica chamaedrys L."
 ]
}

 The dataset includes 606630 records from 1948 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030182-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7483/opendata.cms.0wam.e28c
title: /TprimeBToTH_TLep_Hbb_LH_MT2800_MH250_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/p44ymjch6g.1
title: 模型数据
DOI: 10.7483/opendata.cms.emjj.af6a
title: /TprimeBToTH_TLep_Hbb_LH_MT2800_MH25_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.17044/scilifelab.21287139
title: Canine atopic dermatitis datasets

description: The datasets consists of genotype data from dogs in plink format.
<br>
ATOPYK2 plink files contains genotype data from five dog breeds with and without atopic dermatitis. The ATOPYK2 datafiles were used for imputation. These are pre-QC:ed with the following plink settings --maf 0.001 --geno 0.05 --mind 0.05
<br>
#We recommend a second qc before doing the imputation. The imputation was then run per chromosome so for redoing the imputation, as was done in the publication to which this data is connected, use the following plink code:
plink --bfile ATOPYK2 --chr $chrN --make-bed --dog --allow-no-sex --keep-allele-order --maf 0.001 --geno 0.2 --out 'ATOPYK.chr'$chrN
<br>
<br>
#The final datasets after imputation are datasets split breed wise and in plink format. These sets are QC:ed, and relatedness filtered. The "covar"-file includes fixed effects, these are different between depending on what covariates were significantly affecting the trait (atopic dermatitis) in each breed. These datasets are named GR (golden retriever), LR (labrador retriever), GSD (german shepherd) and WHWT (west highland white terrier). (Boxers are in the ATOPYK2 files but not used for final analyses, hence no breed specific datafile for boxer are included).
DOI: 10.17044/scilifelab.21287139.v1
title: Canine atopic dermatitis datasets

description: The datasets consists of genotype data from dogs in plink format.
<br>
ATOPYK2 plink files contains genotype data from five dog breeds with and without atopic dermatitis. The ATOPYK2 datafiles were used for imputation. These are pre-QC:ed with the following plink settings --maf 0.001 --geno 0.05 --mind 0.05
<br>
#We recommend a second qc before doing the imputation. The imputation was then run per chromosome so for redoing the imputation, as was done in the publication to which this data is connected, use the following plink code:
plink --bfile ATOPYK2 --chr $chrN --make-bed --dog --allow-no-sex --keep-allele-order --maf 0.001 --geno 0.2 --out 'ATOPYK.chr'$chrN
<br>
<br>
#The final datasets after imputation are datasets split breed wise and in plink format. These sets are QC:ed, and relatedness filtered. The "covar"-file includes fixed effects, these are different between depending on what covariates were significantly affecting the trait (atopic dermatitis) in each breed. These datasets are named GR (golden retriever), LR (labrador retriever), GSD (german shepherd) and WHWT (west highland white terrier). (Boxers are in the ATOPYK2 files but not used for final analyses, hence no breed specific datafile for boxer are included).
DOI: 10.7483/opendata.cms.e325.7m7e
title: /TprimeBToTH_TLep_Hbb_LH_MT2800_MH25_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17044/scilifelab.21316677
title: IgM libraries of 30 Swedish rheumatoid arthritis cases

description: The data contains two paired-end read files as fastq.gz per individual library. The sequencing files are in a folder "1" in a folder of the individual labelled "RA_ID_IGM". 
<br>
The libraries were made with an Immunoglobulin M reverse primer and a 5' mulitplex primer set binding in the leader region. The libraries were analyzed with IgDiscover in default settings.
<br>
<strong>Data Access Statement</strong>
The data can be made available for research purposes after publication. The human data has to remain stored in secure places with restricted access. Please send a request with your institutional affiliation, the purpose of the data request and data management information. Access will be granted by the main authors. If you are affiliated with a Swedish institution access is given through Uppmax.
DOI: 10.7483/opendata.cms.17hl.j5pa
title: /TprimeBToTH_TLep_Hbb_LH_MT2800_MH350_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.17044/scilifelab.21316677.v1
title: IgM libraries of 30 Swedish rheumatoid arthritis cases

description: The data contains two paired-end read files as fastq.gz per individual library. The sequencing files are in a folder "1" in a folder of the individual labelled "RA_ID_IGM". 
<br>
The libraries were made with an Immunoglobulin M reverse primer and a 5' mulitplex primer set binding in the leader region. The libraries were analyzed with IgDiscover in default settings.
<br>
<strong>Data Access Statement</strong>
The data can be made available for research purposes after publication. The human data has to remain stored in secure places with restricted access. Please send a request with your institutional affiliation, the purpose of the data request and data management information. Access will be granted by the main authors. If you are affiliated with a Swedish institution access is given through Uppmax.
DOI: 10.17044/scilifelab.21361029
title: Data from: Single-cell profiling of muscle-infiltrating T cells in idiopathic inflammatory myopathies

description: The dataset corresponds to the study by Argyriou, Horuluoglu, Galindo-Feria et. al. <em>Single-cell profiling of muscle-infiltrating T cells in idiopathic inflammatory myopathies</em>. It contains the FASTQ files trimmed by adaptors of RNA-sequencing from single T-cells. There are 3840 cells from muscle biopsies and matched peripheral blood from six donors with idiopathic inflammatory myopathies and one with undefined myopathy. 
<br>
The cells were sorted using flow cytometry, and RNA-sequencing libraries were generated with the Smartseq2 at the Eukaryotic Single-cell Genomics facility at Science for Life Laboratory in Stockholm, Sweden. Libraries were sequenced on an Illumina Nova seq 6000 (2*100bp) at NGI Stockholm sequencing core facilities, Science for Life Laboratory in Stockholm, Sweden. Additionally, there are smart-seq-3 single-cell transcriptomics from 439 memory T cells from peripheral blood from three healthy donors.
<br>
<strong>Terms for access</strong>
The dataset is only to be used for medical research seeking to advance the fields of immunology, autoimmune diseases, or genetics. After justification and discussion with the study's authors, other research areas could be considered. 
<br>
To access the dataset, investigators must sign a data transfer agreement with the dataset owners and comply with EU General Data Protection Regulation. The investigators granted access to the dataset must commit to only using it for the research described in their application.  The data set should not be shared with other parties. 
<br>
For conditional access to the dataset in this publication, please get in touch with datacentre@scilifelab.se
DOI: 10.17044/scilifelab.21361029.v1
title: Data from: Single-cell profiling of muscle-infiltrating T cells in idiopathic inflammatory myopathies

description: The dataset corresponds to the study by Argyriou, Horuluoglu, Galindo-Feria et. al. <em>Single-cell profiling of muscle-infiltrating T cells in idiopathic inflammatory myopathies</em>. It contains the FASTQ files trimmed by adaptors of RNA-sequencing from single T-cells. There are 3840 cells from muscle biopsies and matched peripheral blood from six donors with idiopathic inflammatory myopathies and one with undefined myopathy. 
<br>
The cells were sorted using flow cytometry, and RNA-sequencing libraries were generated with the Smartseq2 at the Eukaryotic Single-cell Genomics facility at Science for Life Laboratory in Stockholm, Sweden. Libraries were sequenced on an Illumina Nova seq 6000 (2*100bp) at NGI Stockholm sequencing core facilities, Science for Life Laboratory in Stockholm, Sweden. Additionally, there are smart-seq-3 single-cell transcriptomics from 439 memory T cells from peripheral blood from three healthy donors.
<br>
<strong>Terms for access</strong>
The dataset is only to be used for medical research seeking to advance the fields of immunology, autoimmune diseases, or genetics. After justification and discussion with the study's authors, other research areas could be considered. 
<br>
To access the dataset, investigators must sign a data transfer agreement with the dataset owners and comply with EU General Data Protection Regulation. The investigators granted access to the dataset must commit to only using it for the research described in their application.  The data set should not be shared with other parties. 
<br>
For conditional access to the dataset in this publication, please get in touch with datacentre@scilifelab.se
DOI: 10.7483/opendata.cms.ygal.lt2f
title: /TprimeBToTH_TLep_Hbb_LH_MT2800_MH350_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM