cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0104728.10fu
title: SH0104728.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive113057.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive113058.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0104729.10fu
title: SH0104729.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive113058.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0104730.10fu
title: SH0104730.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive113059.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive113059.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0104731.10fu
title: SH0104731.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive113060.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive113060.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0104732.10fu
title: SH0104732.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive113061.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive113061.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0104733.10fu
title: SH0104733.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.23668/psycharchives.21181
title: Data for "The Acquisition of Tonal Hierarchies in Western Music During School Years: A Re-Analysis of 40 Years of Research"

description: Understanding the relationships between different pitches as a form of tonality is a key element of listening skills in Western tonal music. Tonal hierarchies (i.e., genre-dependent differing prominence of tones) are reflected in the internal representations of tonal hierarchies (IRTH) in long-term memory. Over the past 40 years, research on how individuals — primarily students aged 6 to 15, as well as adults — acquire IRTH has yielded varied and sometimes contradictory conclusions about the timeline and underlying mechanisms of this process. This review aims to synthesize the evidence and critically examine potential reasons for the heterogeneity in prior findings. To this end, two approaches were applied. First, a Bayesian three-level meta-analysis of 60 effect sizes from 16 studies, reported in 13 articles, revealed a medium difference in IRTH sensitivity between younger and older participants. Second, a model comparison analysis based on cross-sectional data from a single study revealed a non-linear growth dynamic, with a larger increase during adolescence as the best model solution to describe the relationship between sensitivity and age. We also examined the considerable heterogeneity observed within and between studies, particularly how task-specific features of the operationalizations might account for these differences. These findings contribute to the development of theoretical models of music-related skill acquisition and suggest directions for future research.
DOI: 10.6084/m9.figshare.29376939
title: ITGA5 drives glioblastoma progression through SLK-mediated activation of the PI3K-Akt pathway

description: Glioblastoma (GBM) is the most common type of malignant primary brain tumor and exhibits a rising trend in both incidence and mortality rates. Several studies have shown Integrin Subunit Alpha 5 (ITGA5) has oncogene-promoting functions in GBM, but its underlying mechanisms remain unclear. Based on public high-throughput RNA sequencing data, we found ITGA5 expression is upregulated in GBM tissues and cells, which was correlated with poor prognosis and pathological parameters. Next, the experiments further demonstrated that ITGA5 promotes GBM in vitro and in vivo. The potential mechanism of ITGA5 in GBM was investigated by proteomics and phosphoproteomics sequencing, and the PI3K-Akt signaling pathway were mainly enriched after knockdown of ITGA5. As a downstream gene of the PI3K-Akt pathway, we proved elevated ITGA5promote GBM cell invasion and migration through SLK. Finally, the expression of ITGA5 and SLK in malignant astrocytes of different states in GBM patients showed heterogeneity using single-cell sequencing. Overall, our findings highlight a novel molecular mechanism for the tumorigenesis driven by upregulated ITGA5 in GBM, suggesting that the ITGA5-SLK axis may be a new therapeutic target for the treatment of GBM.
DOI: 10.6084/m9.figshare.29376939.v1
title: ITGA5 drives glioblastoma progression through SLK-mediated activation of the PI3K-Akt pathway

description: Glioblastoma (GBM) is the most common type of malignant primary brain tumor and exhibits a rising trend in both incidence and mortality rates. Several studies have shown Integrin Subunit Alpha 5 (ITGA5) has oncogene-promoting functions in GBM, but its underlying mechanisms remain unclear. Based on public high-throughput RNA sequencing data, we found ITGA5 expression is upregulated in GBM tissues and cells, which was correlated with poor prognosis and pathological parameters. Next, the experiments further demonstrated that ITGA5 promotes GBM in vitro and in vivo. The potential mechanism of ITGA5 in GBM was investigated by proteomics and phosphoproteomics sequencing, and the PI3K-Akt signaling pathway were mainly enriched after knockdown of ITGA5. As a downstream gene of the PI3K-Akt pathway, we proved elevated ITGA5promote GBM cell invasion and migration through SLK. Finally, the expression of ITGA5 and SLK in malignant astrocytes of different states in GBM patients showed heterogeneity using single-cell sequencing. Overall, our findings highlight a novel molecular mechanism for the tumorigenesis driven by upregulated ITGA5 in GBM, suggesting that the ITGA5-SLK axis may be a new therapeutic target for the treatment of GBM.
DOI: 10.6084/m9.figshare.29264055
title: Efficacy and safety of trans-carotid approach for mechanical thrombectomy in acute ischemic stroke: a multicenter two-arm case series with systematic review and meta-analysis

description: Direct carotid puncture (DCP) is a rescue technique when recanalization using peripheral access sites is challenging. It is not frequently employed due to concerns with complications or operator unfamiliarity. The safety and efficacy of the transcarotid approach have yet to be sufficiently characterized. A multicenter, retrospective study comparing mechanical thrombectomy outcomes for large vessel occlusion patients using DCP versus medical management after failed peripheral access attempts. Univariate analyses were performed to evaluate the data. We combined the DCP group data from our cases with the existing literature to conduct a single-arm meta-analysis. We utilized logistic and linear regression analyses on individual patient data to identify factors predicting outcomes such as mortality and complications. DCP patients had a longer last known well (<i>p</i> = 0.027) with no statistically significant difference in follow-up modified Rankin scale (mRS) or National Institutes of Health Stroke Scale (NIHSS). The meta-analysis consisted of nine studies, including our retrospective cohort, with a total of 107 patients. DCP achieved successful recanalization in 86% of cases, with a 31% complication rate, primarily due to cervical hematomas. Ninety-day mortality was 37%. 24% of patients attained functional independence (mRS 0–2). Factors associated with higher mortality included advanced age, higher NIHSS scores, and lower ASPECTS scores. Recanalization was associated with improved outcomes. DCP for mechanical thrombectomy is a valuable rescue strategy, offering excellent reperfusion outcomes with acceptable complication rates. Functional independence and independent ambulation at 90 days were comparable to the outcomes reported in recent landmark trials on large-core thrombectomy.
DOI: 10.6084/m9.figshare.29264055.v1
title: Efficacy and safety of trans-carotid approach for mechanical thrombectomy in acute ischemic stroke: a multicenter two-arm case series with systematic review and meta-analysis

description: Direct carotid puncture (DCP) is a rescue technique when recanalization using peripheral access sites is challenging. It is not frequently employed due to concerns with complications or operator unfamiliarity. The safety and efficacy of the transcarotid approach have yet to be sufficiently characterized. A multicenter, retrospective study comparing mechanical thrombectomy outcomes for large vessel occlusion patients using DCP versus medical management after failed peripheral access attempts. Univariate analyses were performed to evaluate the data. We combined the DCP group data from our cases with the existing literature to conduct a single-arm meta-analysis. We utilized logistic and linear regression analyses on individual patient data to identify factors predicting outcomes such as mortality and complications. DCP patients had a longer last known well (<i>p</i> = 0.027) with no statistically significant difference in follow-up modified Rankin scale (mRS) or National Institutes of Health Stroke Scale (NIHSS). The meta-analysis consisted of nine studies, including our retrospective cohort, with a total of 107 patients. DCP achieved successful recanalization in 86% of cases, with a 31% complication rate, primarily due to cervical hematomas. Ninety-day mortality was 37%. 24% of patients attained functional independence (mRS 0–2). Factors associated with higher mortality included advanced age, higher NIHSS scores, and lower ASPECTS scores. Recanalization was associated with improved outcomes. DCP for mechanical thrombectomy is a valuable rescue strategy, offering excellent reperfusion outcomes with acceptable complication rates. Functional independence and independent ambulation at 90 days were comparable to the outcomes reported in recent landmark trials on large-core thrombectomy.
DOI: 10.15468/dl.b86yfu
title: Occurrence Download

description: A dataset containing 29008 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllodoce mucosa"
 ]
}

 The dataset includes 29008 records from 256 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004638-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8y6n4b
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus vestita Griff."
 ]
}

 The dataset includes 28 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020037-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28631330
title: BLA DBS treatment of FS mice vHPC m<sup>6</sup>A epitranscriptomic microarray analysis data

description: Basolateral amygdala (BLA) deep brain stimulation (DBS) has been shown to alleviate symptoms of post-traumatic stress disorder (PTSD), but the specific mechanisms remain incompletely understood. The hippocampus, a brain region closely connected to the amygdala, plays a key role in the pathological processes of PTSD. The N6-methyladenosine (m<sup>6</sup>A) methylation of RNAs in the hippocampus is known to play a significant role in regulating the brain's response to stress and emotional disorders. This study aimed to comprehensively analyze the roles of transcriptome-wide m<sup>6</sup>A modifica-tion of the hippocampus in BLA DBS treatment for a PTSD mouse model by m<sup>6</sup>A sequencing.
DOI: 10.15468/dl.cmr2v9
title: Occurrence Download

description: A dataset listing the 11928 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Living Specimen)",
 "Continent is Asia",
 "Year is 2004"
 ]
}

 The dataset's 11928 records were derived from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020023-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7kf99
title: Occurrence Download

description: A dataset containing 35170 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Legousia speculum-veneris (L.) Chaix"
 ]
}

 The dataset includes 35170 records from 531 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020038-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28253726.v1
title: Supplementary Table 1-4.docx

description: <b>DNMT1 and DNMT3A Promote Hepatocellular Carcinoma Progression and Serve as Potential Therapeutic Targets</b><b>Table S1-4</b><b>Figure S1-9</b>
DOI: 10.5281/zenodo.15058963
title: HG002 Supernova and Canu - Hybrid Assembly

description: Example data for creating a hybrid assembly from a supernova (10X Genomics linked reads) and canu (PacBio CLR long reads). Reads used to generate these assemblies were sourced from the Genome In A Bottle dataset for HG002. Pipeline details can be found here.

Assembly files with haplotigs have been removed using purge_dups:



HG002_canu.contigs.purged.fa.gz

HG002_canu.unitigs.clean.bed (unitigs from canu)

HG002_supernova.pseudohap.purged.fa.gz


1 kb BLASTn alignments of supernova against canu:



HG002.blastn.summary.txt


Hybrid assembly:



HG002_hybrid.assembly.fa.gz (main scaffolds)

HG002_hybrid.assembly.leftover.fa.gz (unplaced scaffolds)

HG002_hybrid.source.bed (source assembly)

HG002_hybrid.source_leftover.bed (source assembly)

HG002_hybrid.scaff.t2t.txt (best chromosome match against T2T)
DOI: 10.5281/zenodo.15058964
title: HG002 Supernova and Canu assemblies

description: Example data for creating a hybrid assembly from a supernova (10X Genomics linked reads) and canu (PacBio CLR long reads). Reads used to generate these assemblies were sourced from the Genome In A Bottle dataset for HG002.

Haplotigs have been removed using purge_dups.

https://github.com/ScottMastro/hybrid-pipeline
DOI: 10.5281/zenodo.15059067
title: HG002 Supernova and Canu assemblies

description: Example data for creating a hybrid assembly from a supernova (10X Genomics linked reads) and canu (PacBio CLR long reads). Reads used to generate these assemblies were sourced from the Genome In A Bottle dataset for HG002.

Haplotigs have been removed using purge_dups.

https://github.com/ScottMastro/hybrid-pipeline
DOI: 10.5281/zenodo.15062708
title: HG002 Supernova and Canu - Hybrid Assembly

description: Example data for creating a hybrid assembly from a supernova (10X Genomics linked reads) and canu (PacBio CLR long reads). Reads used to generate these assemblies were sourced from the Genome In A Bottle dataset for HG002. Pipeline details can be found here.

Assembly files with haplotigs have been removed using purge_dups:



HG002_canu.contigs.purged.fa.gz

HG002_canu.unitigs.clean.bed (unitigs from canu)

HG002_supernova.pseudohap.purged.fa.gz


1 kb BLASTn alignments of supernova against canu:



HG002.blastn.summary.txt


Hybrid assembly:



HG002_hybrid.assembly.fa.gz (main scaffolds)

HG002_hybrid.assembly.leftover.fa.gz (unplaced scaffolds)

HG002_hybrid.source.bed (source assembly)

HG002_hybrid.source_leftover.bed (source assembly)

HG002_hybrid.scaff.t2t.txt (best chromosome match against T2T)
DOI: 10.15468/dl.4566ru
title: Occurrence Download

description: A dataset listing the 13250 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Living Specimen)",
 "Continent is Asia",
 "Year is 2005"
 ]
}

 The dataset's 13250 records were derived from 211 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020025-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.