cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.v837d/1
title: Cycling Cardiorespiratory Responses

description: Cardiorespiratory responses measured during a submaximal cycling task to 60% of age-predicted maximum heart rate. Measurements were made using a Cosmed k4b2 portable system.
DOI: 10.5061/dryad.vq61n/1
title: Haemoparasite_Community_data
DOI: 10.5061/dryad.2hf06/2
title: yeast-phylogeny

description: Time-callibrating phylogeny, modified from Kurtzman and Robnett 2003; with actualized species names according to Kurtzman et al. 2011).
DOI: 10.5061/dryad.2ts15/1
title: 9species

description: We obtained sequence data of humans and 8 other primate species for a region that is orthologous to an intergenic part of human Chromosome 16 (hg19.chr16:60842337-61130970) according to theMultiz alignment of 100 vertebrates in the UCSC genome browser. CpG islands are masked by Repeatmasker.
DOI: 10.5061/dryad.3h9f5/1
title: Data for Figures 1 and S2

description: Data was obtained from competitions between different bacterial strains in the presence of macrophages.
DOI: 10.5061/dryad.3h9f5/2
title: Data for Figures 2 and S7

description: Data was obtained from measuring inhibition halos for different antibiotic-strain combinations.
DOI: 10.5061/dryad.3h9f5/3
title: Data for Figures 3 and S3

description: Data was obtained from competing a mixture of SCV clones against the Ancestral in vivo, inside the mouse gut
DOI: 10.5061/dryad.3h9f5/5
title: Data for Figure S6A-C

description: Data was obtained from measuring growth curves for each clone in a Bioscreen C.
DOI: 10.5061/dryad.3h9f5/6
title: Data for Figure S6D-F

description: Data was obtained from measuring growth curves for each clone in a Bioscreen C.
DOI: 10.5061/dryad.3n61r/1
title: PCG-AA_dataset

description: The PCG-AA amino acid dataset was used to infer the phylogenies presented in Figs 5 and 6. It contains 15,350 positions and was assembled from 79 proteins encoded in the chloroplast genomes of 71 green algae. The data set was prepared using Mesquite 3.04 and is in Nexus format.
DOI: 10.5061/dryad.3n61r/2
title: PCG12_dataset

description: The PCG12 nucleotide dataset was used to infer the phylogeny presented in Fig 5. It contains 30,684 positions and was assembled from 79 chloroplast genes of 71 green algae. The data set was prepared using Mesquite 3.04 and is in Nexus format. It comprises the sequences of 79 protein-coding genes (first two codon positions).
DOI: 10.5061/dryad.4fb1m/2
title: OTU table for fungi (MEC-15-0975)
DOI: 10.5061/dryad.4fb1m/3
title: Flore abundance matrix (MEC-15-0975)
DOI: 10.5061/dryad.4fb1m/4
title: PhysicoChemical data (MEC-15-0975)
DOI: 10.5061/dryad.8405j/1
title: Cichlid pair bonding IT AVT data

description: RT-qPCR values and behavioral scores
DOI: 10.5061/dryad.8q0s4/1
title: AEOLUS master file

description: This zipped file includes all the files needed to load a copy of AEOLUS into a RDBMS
DOI: 10.5061/dryad.9ng87/21
title: SNBW-T_SZAIPI032904-22_2.fq
DOI: 10.5061/dryad.cb360/1
title: scripts (Python)

description: Code used to generate the stochastic data and plot the figures of the manuscript "ASSET: Analysis of sequences of synchronous events in massively parallel spike trains". The analysis results load by some scripts are stored in the companion data archive "performance.zip"
DOI: 10.5061/dryad.cb360/2
title: performance

description: Performance results of the application of ASSET on stochastic simulations and a network simulation with embedded synfire chains. Different folders relate to different data and analysis parameter. Each individual file contains the results (in terms of number of false positives and false negatives) obtained on 100 iterations on the same data type using the same analysis parameters.
DOI: 10.5061/dryad.cf730/1
title: Carson et al 2016 RBS msat data

description: This file contains genotypic data 13 microsatellite loci for all individuals, including annual collections of repatriated adults (1997-2010), larval year classes (1997-2010), and the pooled sample of wild fish (1997-2010).
DOI: 10.5061/dryad.f3d4f/1
title: MEC_Letsch_etal_2016
DOI: 10.5061/dryad.f3s72/1
title: attachment tests F1 and F2

description: excel worksheet containing data of three crosses with Daphnia magna that where screened for their phenotype with respect to resistance to the bacterial parasite Pasteuria ramosa.
DOI: 10.5061/dryad.f3s72/2
title: R code recombination

description: R code used to determine the recombination rates between our loci based on our observations.
DOI: 10.5061/dryad.ff893/14
title: Grid_700_Replicate 2_(exp1_14)

description: Contains sequential images of replicate 2 of the grid with intersections spaced every 700 microns.
DOI: 10.5061/dryad.ff893/15
title: Grid_700_Replicate 3_(exp1_XX)

description: Contains sequential images of replicate 3 of the grid with intersections spaced every 700 microns.
DOI: 10.5061/dryad.ff893/16
title: ReadMe
DOI: 10.5061/dryad.gh2pb/1
title: Genotyping data from DA1 adults

description: This spreadsheet has the genotyping results from 25 loci for crosses between SD females and AB males. Genotypes are as follows: (S-SD homozygote, SB-heterozygote, B-AB homozygote). Headers for columns are in order: sample-unique sample number for each copepod; date-date of 96 well collection plate; ID-identity of subset of F2 adults; plate-additional plate from same ID line denoted with b (or c); sex-male or female adult; TEMP-temperature environment in which F2 individual developed; GDHad_1-marker name (subsequent columns are the additional 24 markers).
DOI: 10.5061/dryad.gh2pb/2
title: Genotyping data from AD1 adults

description: This spreadsheet has the genotyping results from 25 loci for crosses between SD females and AB males. Genotypes are as follows: (S-SD homozygote, SB-heterozygote, B-AB homozygote). Headers for columns are in order: sample-unique sample number for each copepod; date-date identifier for copepod;  plate-plate identifier for 96 well plate; ID-identity of subset of F2 adults; sex-male or female adult; TEMP-temperature environment in which F2 individual developed; GDHad_1-marker name (subsequent columns are the additional 24 markers).
DOI: 10.5061/dryad.gh2pb/3
title: Genotyping data from DA1 F2 nauplii

description: This spreadsheet has the genotyping results from 25 loci for crosses between SD females and AB males. Genotypes are as follows: (S-SD homozygote, SB-heterozygote, B-AB homozygote). Headers for columns are in order: sample-unique sample number for each copepod; date-date identifier for copepod collection;  ID-identity female from which eggsac was obtained; sex-N for nauplii TEMP-temperature environment in which F2 individual developed (all 20 degrees for this set); GDHad_1-marker name (subsequent columns are the additional 24 markers).
DOI: 10.5061/dryad.gh2pb/4
title: R code for analyzing 2-way and 3-way interactions

description: This code was used to compute chi-square values for all 2-way and 3-way interactions between the loci included in the analysis.
DOI: 10.5061/dryad.gh2pb/5
title: Male/female contingency table R code

description: This R code calculates the contingency tables for genotypic results for males versus females.
DOI: 10.5061/dryad.j25m2/3
title: Burgarella_2016_phenotype_data

description: Flowering time measures significantly associated with genotypes in Medicago truncatula
DOI: 10.5061/dryad.j25m2/5
title: Burgarella_2016_kinship_matrix

description: Kinship matrix of 174 Medicago truncatula accessions used in association analysis.
DOI: 10.5061/dryad.mb65n/1
title: Supplementary material-2016
DOI: 10.5061/dryad.pf064.2
title: Data from: Bees learn preferences for plant species that offer only pollen as a reward
DOI: 10.5061/dryad.q4q11/1
title: Data on post-fledging survival, age of independence
DOI: 10.5061/dryad.q4q11/2
title: Life history data
DOI: 10.5061/dryad.q4q11/3
title: Data on nest predation
DOI: 10.5061/dryad.q4q11/4
title: Literature sources for all data
DOI: 10.5061/dryad.qp512/1
title: Read me file with location codes
DOI: 10.5061/dryad.qp512/2
title: 2 Dataset-Freshwater and marine

description: Data comparing the marine and freshwater stickleback; with principal component scores (see details in the manuscript).
DOI: 10.5061/dryad.qp512/3
title: 1 Dataset-Freshwater

description: Data comparing the freshwater stickleback only; with principal component scores (see details in the manuscript).
DOI: 10.5061/dryad.qp512/4
title: 3 Dataset- Freshwater, marine and North American

description: Data comparing the marine and freshwater stickleback from Norway and the two North American species pairs; with principal component scores (see details in the manuscript).
DOI: 10.5061/dryad.s6f76/1
title: DataArchive
DOI: 10.5061/dryad.vq61n/2
title: tick_data_dryad

description: This data is used for additional analysis for the manuscript. It contains a subset of the larger dataset. This required a separate dataset due to the fact there was relatively little available data. The two tick species investigated were Amblyomma hebraeum and Rhipicephalus spp. Tick counting procedures are described in the manuscript.
DOI: 10.5061/dryad.04416/1
title: FpetWasp_Data

description: These data are derived from syconia (enclosed inflorescences) collected between 2007-2013 from multiple Ficus petiolaris trees along a broad latitudinal gradient in Baja, Mexico. Data collected include multiple estimates of tree connectivity. They also include per syconium counts of foundress pollinators, pollinator offspring, associated species of nonpollinators, and seeds. Syconia volumes and tree latitudes are also included.
DOI: 10.5061/dryad.04416/2
title: FpetWasp_Analysis

description: This file recreates the entire analysis of Duthie and Nason (2016) in R, including analysis of the appendix, using the file `FpetWasp_Data.csv'. It also recreates all figures used in the manuscript. More detailed explanations are included in the comments of this file.
DOI: 10.5061/dryad.15cn3/1
title: Effects of global warming and pesticide exposure on mosquito-damselfly interactions

description: This database include two data sheets. The first sheet contains   survival, initial weight and end weight data of mosquitoes in different temperature-by-pesticide treatment combinations in the exposure experiment. The second sheet consists of data of latitude, population, survival, initial weight and end weight of damselfies in the exposure experiment, number of mosquitoes eaten and behaviors of both damselfly predators and mosquito prey during the predation experiment.
DOI: 10.5061/dryad.2b89t/1
title: Turtle case records from 1996-2012

description: Table A1: Turtle case records from 1996-2012, North Carolina State University, College of Veterinary Medicine, Turtle Rescue Team, N=2,613.  Description and summary of basic information available on TRT turtle cases from 1996-2012 in archival records held by the North Carolina State University Libraries Special Collections Research Center for research into morbidity and mortality of wild turtles. Excel spreadsheet with single tab of data in columns A-Q. Variables are case number, name of animal as assigned by TRT, beginning date of chart, ending date of chart, days observed, species, sex, gravidity, location, county, presenting problem, problem description, outcome, other file contents present (Misc File Contents), and staff notes.
DOI: 10.5061/dryad.2b89t/2
title: Non-turtle case records from 1996-2012, N=54

description: Table A2. Non-turtle case records from 1996-2012, North Carolina State University, College of Veterinary Mediine, Turtle Rescue Team, N=54 Description and summary of basic information available on TRT non-turtle cases from 1996-2012 in archival records held by the North Carolina State University Libraries Special Collections Research Center for research into morbidity and mortality of wild reptiles and amphibians. Excel spreadsheet with single tab of data in columns A-QVariables are case number, name of animal as assigned by TRT, beginning date of chart, ending date of chart, days observed, species, sex, gravidity, location, county, presenting problem, problem description, outcome, other file contents present (Misc File Contents), and staff notes.
DOI: 10.5061/dryad.2th2m/1
title: raw data Maze Guilmo et al PRSLB

description: This file summarizes data obtained during the common experiment described in the MS. Variables used to perform statistical models (LMMs and Qst/Fst) are provided.
DOI: 10.5061/dryad.2th2m/2
title: raw data genotypes

description: bi-allelic data (16 microsatellite markers) used to measure Fst values among population pairs.
DOI: 10.5061/dryad.3h061/1
title: 20150422-AC1-AC1809_S1_R1

description: Mock rep1
DOI: 10.5061/dryad.3h061/3
title: 20150422-AC2-AC1809_S2_R1

description: Mock rep2
DOI: 10.5061/dryad.3h061/4
title: 20150422-AC4-AC1809_S3_R1

description: AKTinh rep1
DOI: 10.5061/dryad.3h061/5
title: 20150422-AC5-AC1809_S4_R1

description: AKTinh rep2
DOI: 10.5061/dryad.3h061/6
title: 20150422-AC7-AC1809_S5_R1

description: ACLYinh rep1
DOI: 10.5061/dryad.3h061/7
title: 20150422-AC8-AC1809_S6_R1

description: ACLYinh rep2
DOI: 10.5061/dryad.3h061/8
title: 20150422-AC13-AC1809_S9_R1

description: IL-4 rep1
DOI: 10.5061/dryad.3n61r/3
title: PCG123degen_dataset

description: The PCG123degen nucleotide dataset was used to infer the phylogeny presented in Fig 5. It contains 46,026 positions and was assembled from 79 chloroplast genes of 71 green algae. The data set was prepared using Mesquite 3.04 and is in Nexus format. It comprises the sequences of 79 protein-coding genes (all three codon positions) that were degenerated using the Degen1.pl script of Regier et al. (Nature 2010 463:1079-1083).
DOI: 10.5061/dryad.3n61r/4
title: PCG12RNA_dataset

description: The PCG12RNA nucleotide dataset was used to infer the phylogenies presented in Fig 7. It contains 36,658 positions and was assembled from 108 chloroplast genes of 71 green algae. The data set was prepared using Mesquite 3.04 and is in Nexus format. It comprises the sequences of 79 protein-coding genes (first two codon positions) as well as the sequences of 29 rRNA and tRNA genes.
DOI: 10.5061/dryad.3n61r/5
title: PCG123degenRNA_dataset

description: The PCG123degenRNA nucleotide dataset was used to infer the phylogenies presented in Fig 7. It contains 52,000 positions and was assembled from 108 chloroplast genes of 71 green algae. The data set was prepared using Mesquite 3.04 and is in Nexus format. It comprises the sequences of 79 protein-coding genes (all three codon positions) that were degenerated using the Degen1.pl script of Regier et al. (Nature 2010 463:1079-1083) as well as the sequences of 29 rRNA and tRNA genes.
DOI: 10.5061/dryad.427m6/1
title: archive data Redman et al 2016

description: Mortality, speed of kill and yield data for 8 genetically distinct nucleopolyhedrosis virus variants from the African army worm Spodoptera exempta, plus comparative data for the mixed parent wild type virus.
DOI: 10.5061/dryad.5h3r2/1
title: Common Garden, Comparative and Selection Data

description: The different parts of the paper are represented by separate sheets. Note that the supplementary files (mostly summary statistics) are included as well
DOI: 10.5061/dryad.b58j2/1
title: population summary seed production & temperature

description: Mean population relative crop size and dTmax (relative mean maximum temperature for April) for Quercus lobata at Hastings Natural History Reserve, Carmel Valley, CA, USA
DOI: 10.5061/dryad.b58j2/2
title: relative cost of fruiting for individual trees

description: rcf values for individual Q. lobata trees, as estimated by log-log relationship between mean relative crop size and rcf in Isagi et al., 1997 model. See R-code associated with article
DOI: 10.5061/dryad.b58j2/3
title: temperature data

description: Delta mean maximum April Temperature 1939-2014 for Hastings RAWS weather station. Hastings Natural History Reserve, Carmel Valley, CA. Delta= annual value - minimum value. Values beyond the 99% percentile were substituted with 99th percentile value.
DOI: 10.5061/dryad.cf730/2
title: RBS_Haps

description: This file contains DNA sequences for 34 mitochondrial DNA haplotypes (311 bp fragment of cytochome b).
DOI: 10.5061/dryad.cf730/3
title: RBS_mtDNA

description: This is an Arlequin file that contains counts of each mtDNA haplotype (311 bp cytb) in each collection, including annual samples from 1997-2010 for repatriated adults, larval cohorts, and wild fish (pooled).
DOI: 10.5061/dryad.fc324/1
title: maracheetahCH

description: File with the location and sampling occasion for each cheetah that was sighted during the sampling period
DOI: 10.5061/dryad.fc324/2
title: maracheetahEffort

description: The amount of effort (in log(kilometers)) per grid cell (rows) for each sampling occasion (days in columns)
DOI: 10.5061/dryad.fc324/3
title: maracheetahHabitat

description: Suitable (1) and unsuitable (0) habitat within the study area
DOI: 10.5061/dryad.fc324/4
title: maracheetahSex

description: The ID and sex (1 = male and 0 = female) of each cheetah sighted during the sampling period
DOI: 10.5061/dryad.fc324/5
title: maracheetahTraps

description: Grid cells (incl coordinates in UTM) where a cheetah was sighted during a particular sampling occasion
DOI: 10.5061/dryad.g29pr/1
title: Summary of SHG and SRM data

description: Raw data of quantitative imaging analysis of SRM and SHG
DOI: 10.5061/dryad.g29pr/2
title: Correlation between SRM and SHG for three UUO studies (2-10-16)

description: Correlation between SRM and SHG analysis
DOI: 10.5061/dryad.g8r7t/1
title: Silene Microsatellite Data

description: This file contains genotype data for ten microsatellite loci in Silene spaldingii.  Data are presented in GENEPOP format.
DOI: 10.5061/dryad.g8r7t/2
title: Silene cpDNA Data

description: This file contains chloroplast DNA sequences observed in trnF-trnL3 in Silene spaldingii. Data are presented in FASTA format.
DOI: 10.5061/dryad.k8pp1/1
title: Mass loss, CWM and FD values for litterbag mixtures

description: The .csv files contains the data needed to run the analyses described in Exotic or not, leaf trait dissimilarity modulates the effect of dominant species on mixed litter decomposition
DOI: 10.5061/dryad.k8pp1/2
title: R script to run analyses included in paper

description: The R script contains details on how these analyses were carried out and what the column headings mean.
DOI: 10.5061/dryad.ks10q/1
title: Associational Resistance or Susceptibility Complete Data File

description: The data were collected at Lancaster Environment Centre in laboratory-based mesocosms. The data presented here in Microsoft Excel format were analysed using 'R' v.2.15.2 statistical software. For this, each worksheet was re-formatted to individual csv files and analysed seperately. The first worksheet presents the data regarding the population growth rate of Brevicoryne brassicae aphids. The second worksheet presents the data regarding the population growth rate of Myzus persicae aphids. The third worksheet presents the counts of B. brassicae and M. persicae at different sites within their host plants, when presented in single aphid species treatments. The fourth worksheet presents the counts of B. brassicae and M. persicae at different sites within their host plants, when presented in mixed aphid species treatments. The fifth and final worksheet presents the data of the predator, Chrysoperla carnea, growth rates.
DOI: 10.5061/dryad.m03vf/1
title: Communities visited with site descriptions

description: These are all of the communities used in the analyses with site descriptions.
DOI: 10.5061/dryad.m03vf/2
title: Clarkia_Accessions

description: Description of samples used to generate the Clarkia phylogeny.
DOI: 10.5061/dryad.pf064.1
title: Data from: Bees learn preferences for plant species that offer only pollen as a reward
DOI: 10.5061/dryad.pf064.2/1.2
title: Data and R scripts for bee preference

description: This zip file contains Excel files and R scripts that allow analysis and graphing of bee flower preference (rejections+acceptances only). Each R script indicates within it the corresponding Excel file to be analyzed. Data presented here is prepared for analysis. Raw data is available upon request from the corresponding author.
DOI: 10.5061/dryad.q5m84/1
title: The shield effect-BiolLett-data

description: Data file for all statistical tests in the paper: female treatment, number of tests until cannibalism, censor, gift stealing.
DOI: 10.5061/dryad.sj5t2/1
title: Senecio flavus transcriptome assembly

description: Transcriptome assembled from 4 individuals of Senecio flavus leaf tissue using Trinity
DOI: 10.5061/dryad.sj5t2/2
title: Senecio glaucus transcriptome assembly

description: Transcriptome assembled from 3 individuals of Senecio glaucus leaf tissue using Trinity
DOI: 10.5061/dryad.t9t28/1
title: Constant temperature data

description: Raw data for CTmax when flies were developed at six  constant temperatures
DOI: 10.5061/dryad.t9t28/2
title: Fluctating temperatures

description: Raw estimates of CTmax when flies were developed at fluctuating temperatures.
DOI: 10.5061/dryad.32q7v/1
title: Model code for invasion with spatially varying Allee effects

description: These files provide the model code in R for exploration of patterns of invasion with spatially varying Allee effects. There are separate files for each landscape type (constant, random, coarse patches, fine patches, gradient). Filenames ending in "detdisp" are the main models discussed in the manuscript, filenames ending in "stoch" are for the alternate model with demographic stochasticity.
DOI: 10.5061/dryad.38689/1
title: Kost et al. 2016 all raw data

description: Data are organized in individual sheets per Figure. C always stands for corn strain, R for rice strain.
DOI: 10.5061/dryad.3h061/10
title: 20150422-AC16-AC1809_S11_R1

description: IL-4 AKTinh rep1
DOI: 10.5061/dryad.3h061/11
title: 20150422-AC17-AC1809_S12_R1

description: IL-4 AKTinh rep2
DOI: 10.5061/dryad.3h061/12
title: 20150422-AC19-AC1809_S13_R1

description: IL-4 ACLYinh rep1
DOI: 10.5061/dryad.3h061/13
title: 20150422-AC20-AC1809_S14_R1

description: IL-4 ACLYinh rep2
DOI: 10.5061/dryad.3h061/9
title: 20150422-AC14-AC1809_S10_R1

description: IL-4 rep2
DOI: 10.5061/dryad.48gp0/1
title: Genotypes from three chicken breeds

description: Files contain in archive Gallus_genotypes.zip contain genotype data from Pengelly et al, 2016. 'Commercial chicken breeds exhibit highly divergent patterns of linkage disequilibrium'.

The three breed types are in separate file: WEL - white egg layers, BEL - brown egg layers, BRO - broilers.
Genotypes have been QCed, providing SNPs with an allele frequency &gt; 5%, HWE p &gt; 0.001, and having 95% genotyping rate accross the breed.

Genotype data are provided in the PLINK format, see http://pngu.mgh.harvard.edu/~purcell/plink/index.shtml for further details including file format specifications.
DOI: 10.5061/dryad.4df50/1
title: Aglaothorax cline female preference data

description: Female preferences in populations of shield-back katydids along a song cline in the southern California Transverse Ranges. This spreadsheet summarizes results for choice testing of pulse number, no-choice testing of interpulse interval, and post hoc analyses of preference and male song that support a hypothesis of reinforcement.
DOI: 10.5061/dryad.4df50/2
title: 28S MAFFT align GARLI bootstrap final

description: Nexus file for maximum likelihood estimation of 28S rDNA gene tree for Aglaothorax shield-back katydids.
DOI: 10.5061/dryad.4df50/3
title: AK GARLI bootstrap

description: Nexus file for maximum likelihood estimation of arginine kinase gene tree for Aglaothorax shield-back katydids.
DOI: 10.5061/dryad.4df50/4
title: WG GARLI bootstrap

description: Nexus file for maximum likelihood estimation of wingless gene tree for Aglaothorax shield-back katydids.
DOI: 10.5061/dryad.4df50/5
title: mtDNA Bayesian CIPRES final run

description: Nexus file for Bayesian tree estimation from mt COI and COII for Aglaothorax shield-back katydids.