cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8131817.v1
title: Colour Reflectance Spectra, Ambient Light Spectrum, and Zebra Finch Sensitivity Curves from Categorical colour perception occurs in both signalling and non-signalling colour ranges in a songbird

description: Spectra of the colours and lighting used in this experiment as well as zebra finch spectral sensitivity curves.
DOI: 10.6084/m9.figshare.8131781
title: General Zhihu Corpus

description: Chinese language corpus containing 3,434 questions and 231,939 answers posted to Zhihu.com.<br>Questions taken from 10 popular topics: “Culture” (文化), “Education” (教育), “Art” (艺术), “University” (大学), “The Internet” (互联网), “Psychology” (心理), “Technology” (科技), “Health” (健康), “Career Development” (职业发展), “Lifestyle” (生活方式)<br>Includes R scripts used to extract data.Data extracted in April 2019.<br>Files are questions (Q), answers (A) and question topics (T).The naming convention is the URL of the webpage:For questions:https://www.zhihu.com/question/[question number]For answers:https://www.zhihu.com/question/[question number]/answer/[answer number]<br>Answers are organised by author category: "male", "female", "undisclosed gender", "anonymous", "organisation" using information from the user's profile where publicly accessible.<br>Short Answers: ≤1,000 characters Medium Answers: 1,001-4,999 characters Long Answers: ≥5,000 characters<br>
DOI: 10.6084/m9.figshare.8131775
title: analysis results based on transcriptome of H. axyridis

description: The annotation information, detected SSR, predicted alternative splicing, repeat elements, long no-coding RNA and other non-coding RNAs (tRNA, snRNA, snoRAN, rRNA) analysed base on the transcriptome of H. axyridis
DOI: 10.6084/m9.figshare.8131775.v1
title: analysis results based on transcriptome of H. axyridis

description: The annotation information, detected SSR, predicted alternative splicing and long no-coding RNA analysed base on the transcriptome of H. axyridis
DOI: 10.6084/m9.figshare.8131775.v2
title: analysis results based on transcriptome of H. axyridis

description: The annotation information, detected SSR, predicted alternative splicing and long no-coding RNA analysed base on the transcriptome of H. axyridis
DOI: 10.6084/m9.figshare.8131775.v3
title: analysis results based on transcriptome of H. axyridis

description: The annotation information, detected SSR, predicted alternative splicing and long no-coding RNA analysed base on the transcriptome of H. axyridis
DOI: 10.6084/m9.figshare.8131775.v4
title: analysis results based on transcriptome of H. axyridis

description: The annotation information, detected SSR, predicted alternative splicing，identified CDS and long no-coding RNA analysed base on the transcriptome of H. axyridis
DOI: 10.6084/m9.figshare.8131775.v5
title: analysis results based on transcriptome of H. axyridis

description: The annotation information, detected SSR, predicted alternative splicing and long no-coding RNA analysed base on the transcriptome of H. axyridis
DOI: 10.6084/m9.figshare.8131775.v7
title: analysis results based on transcriptome of H. axyridis

description: The annotation information, detected SSR, predicted alternative splicing, repeat elements, long no-coding RNA and other non-coding RNAs (tRNA, snRNA, snoRAN, rRNA) analysed base on the transcriptome of H. axyridis
DOI: 10.6084/m9.figshare.8131775.v6
title: analysis results based on transcriptome of H. axyridis

description: The annotation information, detected SSR, predicted alternative splicing and long no-coding RNA analysed base on the transcriptome of H. axyridis
DOI: 10.6084/m9.figshare.8131565
title: Renewable energy, non-renewable energy and sustainable development

description: The purpose of the present study is to analyse the effects of renewable energy and non-renewable energy on sustainable development. This study is pioneering in this respect because it analyses the effect of renewable energy on adjusted net savings, which is a good sustainable development variable. For this purpose, the data of 40 developed and 73 developing countries were included. According to the estimation results obtained in the study, renewable energy has a positive and statistically significant effect on sustainable development both in developed countries and in developing countries. The impact of renewable energy on sustainable development is greater than the impact of non-renewable energy. In this respect, as the renewable energy amount increases, the level of sustainable development increases. According to these results, the fact that countries use renewable energy more than non-renewable energy sources is extremely important in terms of making progress towards sustainability of development and the 2030 Sustainable Development Goals.
DOI: 10.6084/m9.figshare.8131565.v1
title: Renewable energy, non-renewable energy and sustainable development

description: The purpose of the present study is to analyse the effects of renewable energy and non-renewable energy on sustainable development. This study is pioneering in this respect because it analyses the effect of renewable energy on adjusted net savings, which is a good sustainable development variable. For this purpose, the data of 40 developed and 73 developing countries were included. According to the estimation results obtained in the study, renewable energy has a positive and statistically significant effect on sustainable development both in developed countries and in developing countries. The impact of renewable energy on sustainable development is greater than the impact of non-renewable energy. In this respect, as the renewable energy amount increases, the level of sustainable development increases. According to these results, the fact that countries use renewable energy more than non-renewable energy sources is extremely important in terms of making progress towards sustainability of development and the 2030 Sustainable Development Goals.
DOI: 10.21227/mb4n-e825
title: MLCOMM Pilot Contamination Data

description: This data is used to train ML based SINR predictor
DOI: 10.6084/m9.figshare.8131547
title: Supplementary Material for: Topiramate plus Cooling for Hypoxic-Ischemic Encephalopathy: A Randomized, Controlled, Multicenter, Double-Blinded Trial

description: <b><i>Background and Objectives:</i></b> Therapeutic interventions to improve the efficacy of whole-body cooling for hypoxic-ischemic encephalopathy (HIE) are desirable. Topiramate has been effective in reducing brain damage in experimental studies. However, in the clinical setting information is limited to a small number of feasibility trials. We launched a randomized controlled double-blinded topiramate/placebo multicenter trial with the primary objective being to reduce the antiepileptic activity in cooled neonates with HIE and assess if brain damage would be reduced as a consequence. <b><i>Study Design:</i></b> Neonates were randomly assigned to topiramate or placebo at the initiation of hypothermia. Topiramate was administered via a nasogastric tube. Brain electric activity was continuously monitored. Topiramate pharmacokinetics, energy-related and Krebs’ cycle intermediates, and lipid peroxidation biomarkers were determined using liquid chromatography-mass spectrometry and MRI for assessing brain damage. <b><i>Results:</i></b> Out of 180 eligible patients 110 were randomized, 57 (51.8%) to topiramate and 53 (48.2%) to placebo. No differences in the perinatal or postnatal variables were found. The topiramate group exhibited less seizure burden in the first 24 h of hypothermia (topiramate, <i>n</i> = 14 [25.9%] vs. placebo, <i>n</i> = 22 [42%]); needed less additional medication, and had lower mortality (topiramate, <i>n</i> = 5 [9.2%] vs. placebo, <i>n</i> = 10 [19.2%]); however, these results did not achieve statistical significance. Topiramate achieved a therapeutic range in 37.5 and 75.5% of the patients at 24 and 48 h, respectively. A significant association between serum topiramate levels and seizure activity (<i>p</i> &lt; 0.016) was established. No differences for oxidative stress, energy-related metabolites, or MRI were found. <b><i>Conclusions:</i></b> Topiramate reduced seizures in patients achieving therapeutic levels in the first hours after treatment initiation; however, they represented only a part of the study population. Our results warrant further studies with higher loading and maintenance dosing of topiramate.
DOI: 10.6084/m9.figshare.8131535
title: RNA-Seq data of root and stem tissues of asparagus bean

description: RNA-Seq data of root and stem tissues of asparagus bean
DOI: 10.6084/m9.figshare.8131535.v1
title: RNA-Seq data of root and stem tissues of asparagus bean

description: RNA-Seq data of root and stem tissues of asparagus bean
DOI: 10.26180/5cdbde51bbb1b
title: Data Set for Capacity Expansion Planning with Unit Commitment

description: This data set presents six test cases; 6 bus, 6bus ww, 14 bus, 15 bus, 21 bus and 24 bus, for generation, transmission and storage expansion planning problems. The data set is consisted of cost and technical parameters for unit commitment formulation, network parameters for DC power flow and hourly chronological load and renewable generation profiles for a period of one year. For more details refer to the document "Test Cases for Capacity Expansion Planning with Unit Commitment"
DOI: 10.6084/m9.figshare.8131445
title: Spreadsheet

description: Weather observation at Stellenbosch University's library
DOI: 10.6084/m9.figshare.8131436
title: Toward comprehension of multiple human cells uptake of engineered nano metal oxides: quantitative inter cell line uptake specificity (QICLUS) modeling

description: To address the nanomaterial exposure threat, it is imperative to understand how nanomaterials are recognized, internalized, and distributed within diverse cell systems. Targeting of nanomaterials to a specific cell type is generally attained through the modification of the nanoparticle (NP) surface leading to required cellular uptake. The enhanced cellular uptake to normal cells can direct to the higher interaction of NPs with subcellular organelles resulting the provocation of various signaling pathways. The successes of NPs rely on the prospect for the synthesis of functionalized NPs with necessary properties and their enhanced potential for cellular uptake for specific targeting. In the present study, we have modeled the cellular uptake of 109 surface modifiers of metal oxide nanoparticles (MNPs) for three different cell lines: HUVEC (Human endothelial cells), U937 (human macrophage cells), and PaCa2 (cancer cell lines). Along with the quantitative structure–activity relationship (QSAR) models, for the very first time we have developed and performed quantitative inter cell line uptake specificity (QICLUS) modeling to identify the physicochemical properties, as well as majorly structural fragments responsible for cellular uptake differences between two specific cell lines. The present work provides a comprehensive understanding of the cellular uptake of MNPs and the underlying structural parameters controlling the nano-cellular interactions. This phenomenon has also been analyzed from the QSAR and QICLUS models that concluded the functional groups of surface modifiers like amine, anhydride, halogen atoms, nitro group, acids have the dominating roles for the uptake of MNPs into the cell lines. Thus, the developed models may be used for designing of novel surface modifiers of MNPs of desired characteristics for proper cell–NPs interactions, as well as in the context of virtual screening aspect. Moreover, the MNP–cell interactions can give some idea about the toxicity for target-specific drug delivery treatment as higher cellular uptake is required for specific cells to treat the disease and lower uptake to the neighboring cells for lower toxicity.
DOI: 10.6084/m9.figshare.8131436.v1
title: Toward comprehension of multiple human cells uptake of engineered nano metal oxides: quantitative inter cell line uptake specificity (QICLUS) modeling

description: To address the nanomaterial exposure threat, it is imperative to understand how nanomaterials are recognized, internalized, and distributed within diverse cell systems. Targeting of nanomaterials to a specific cell type is generally attained through the modification of the nanoparticle (NP) surface leading to required cellular uptake. The enhanced cellular uptake to normal cells can direct to the higher interaction of NPs with subcellular organelles resulting the provocation of various signaling pathways. The successes of NPs rely on the prospect for the synthesis of functionalized NPs with necessary properties and their enhanced potential for cellular uptake for specific targeting. In the present study, we have modeled the cellular uptake of 109 surface modifiers of metal oxide nanoparticles (MNPs) for three different cell lines: HUVEC (Human endothelial cells), U937 (human macrophage cells), and PaCa2 (cancer cell lines). Along with the quantitative structure–activity relationship (QSAR) models, for the very first time we have developed and performed quantitative inter cell line uptake specificity (QICLUS) modeling to identify the physicochemical properties, as well as majorly structural fragments responsible for cellular uptake differences between two specific cell lines. The present work provides a comprehensive understanding of the cellular uptake of MNPs and the underlying structural parameters controlling the nano-cellular interactions. This phenomenon has also been analyzed from the QSAR and QICLUS models that concluded the functional groups of surface modifiers like amine, anhydride, halogen atoms, nitro group, acids have the dominating roles for the uptake of MNPs into the cell lines. Thus, the developed models may be used for designing of novel surface modifiers of MNPs of desired characteristics for proper cell–NPs interactions, as well as in the context of virtual screening aspect. Moreover, the MNP–cell interactions can give some idea about the toxicity for target-specific drug delivery treatment as higher cellular uptake is required for specific cells to treat the disease and lower uptake to the neighboring cells for lower toxicity.
DOI: 10.6084/m9.figshare.8131421
title: Figure9 data

description: Figure 9 data
DOI: 10.6084/m9.figshare.8131421.v1
title: Figure9 data

description: Figure 9 data
DOI: 10.6084/m9.figshare.8131388
title: Figure8 data

description: Figure 8 data
DOI: 10.6084/m9.figshare.8131388.v1
title: Figure8 data

description: Figure 8 data
DOI: 10.6084/m9.figshare.8131385
title: Paranoia, from the icon to the ear: a reflection on soundscape, landscape and cityscape

description: “Clinging to the remnants of visual space in this new acoustic age has become a kind of a paranoiac state”, Marshall McLuhan wrote to R. Murray Schafer in 1974. In an analysis of twentieth century transformations of spatial concepts and specifically, of 1960s and 1970s ideas of soundscape, this essay tackles the multiplicity and interdisciplinarity of ideas relating to soundscape. The text is accompanied by recordings from an acoustic camera, where the sounds of hands, voice and piano were traced on the walls, floors and ceilings of different spaces, in an attempt to explore the anxiety and relief inherent in images of soundscape.
DOI: 10.6084/m9.figshare.8131385.v1
title: Paranoia, from the icon to the ear: a reflection on soundscape, landscape and cityscape

description: “Clinging to the remnants of visual space in this new acoustic age has become a kind of a paranoiac state”, Marshall McLuhan wrote to R. Murray Schafer in 1974. In an analysis of twentieth century transformations of spatial concepts and specifically, of 1960s and 1970s ideas of soundscape, this essay tackles the multiplicity and interdisciplinarity of ideas relating to soundscape. The text is accompanied by recordings from an acoustic camera, where the sounds of hands, voice and piano were traced on the walls, floors and ceilings of different spaces, in an attempt to explore the anxiety and relief inherent in images of soundscape.
DOI: 10.6084/m9.figshare.8131379
title: Model Output Data Stretch Calculations from Novel simulations to determine the impact of superficial perineal structures on vaginal delivery

description: <i>Background:</i> This study's aim was to determine whether the inclusion of superficial perineal structures in a finite-element simulation of vaginal delivery impacts the pubovisceral muscle and perineal body, two common sites of birth-related injury. The hypothesis, inferred from prevailing literature, was that these structures would have minimal influence (differences less than ±10%). <i>Methods:</i> Two models were made using the Visible Human Project's female cadaver to create a rigid, fixed pelvis, musculature held by spring attachments to that pelvis, and a rigid, ellipsoidal fetal head prescribed with an inferior displacement to simulate delivery. Injury site stretch ratios and fetal head and perineal body displacements and angles of progression were compared between the Omitted Model (which excluded the superficial perineal structures as is common practice) and the Included Model (which included them). <i>Results:</i> Included Model stretch ratios were +107%, −9.84% and −14.6% compared to Omitted Model perineal body and right and left pubovisceral muscles, respectively. Included Model peak perineal body inferior displacement was +72.5% greater while similar anterior–posterior displacements took longer to reach. <i>Conclusion:</i> These results refute our hypothesis, suggesting superficial perineal structures impact simulations of vaginal delivery by inhibiting perineal body anterior–posterior displacement, which stretches and inferiorly displaces the perineal body.
DOI: 10.6084/m9.figshare.8131379.v1
title: Model Output Data Stretch Calculations from Novel simulations to determine the impact of superficial perineal structures on vaginal delivery

description: <i>Background:</i> This study's aim was to determine whether the inclusion of superficial perineal structures in a finite-element simulation of vaginal delivery impacts the pubovisceral muscle and perineal body, two common sites of birth-related injury. The hypothesis, inferred from prevailing literature, was that these structures would have minimal influence (differences less than ±10%). <i>Methods:</i> Two models were made using the Visible Human Project's female cadaver to create a rigid, fixed pelvis, musculature held by spring attachments to that pelvis, and a rigid, ellipsoidal fetal head prescribed with an inferior displacement to simulate delivery. Injury site stretch ratios and fetal head and perineal body displacements and angles of progression were compared between the Omitted Model (which excluded the superficial perineal structures as is common practice) and the Included Model (which included them). <i>Results:</i> Included Model stretch ratios were +107%, −9.84% and −14.6% compared to Omitted Model perineal body and right and left pubovisceral muscles, respectively. Included Model peak perineal body inferior displacement was +72.5% greater while similar anterior–posterior displacements took longer to reach. <i>Conclusion:</i> These results refute our hypothesis, suggesting superficial perineal structures impact simulations of vaginal delivery by inhibiting perineal body anterior–posterior displacement, which stretches and inferiorly displaces the perineal body.
DOI: 10.6084/m9.figshare.8131376
title: Figure7 data

description: <b>Figure 7</b>
DOI: 10.6084/m9.figshare.8131376.v1
title: Figure7 data

description: <b>Figure 7</b>
DOI: 10.6084/m9.figshare.8131328
title: Single-cell RNA sequencing of human kidney

description: A comprehensive cellular anatomy of normal human kidney is crucial to address the cellular origins of renal disease and renal cancer. Some kidney diseases may be cell type-specific, especially renal tubular cells. To investigate the classification and transcriptomic information of human kidney, we performed a method to obtain single-cell suspension of kidney rapidly, and conducted single-cell RNA sequencing (scRNA-seq). We present scRNA-seq data of 23,366 high quality cells from human kidneys of 3 donors. In this dataset, we show 10 clusters of normal human renal cells. Due to the high quality of single cell transcriptomic information, proximal tubule (PT) cells were classified into 3 subtypes and collecting ducts cells into 2 subtypes. Collectively, our data will provide a reliable reference for the studies of renal cell biology and kidney diseases.
DOI: 10.21227/vd5a-sy66
title: MLCOMM Pilot Contamination Data

description: This data is used to train ML based SINR predictor
DOI: 10.6084/m9.figshare.8131328.v1
title: Single-cell RNA sequencing of human kidney

description: A comprehensive cellular anatomy of normal human kidney is crucial to address the cellular origins of renal disease and renal cancer. Some kidney diseases may be cell type-specific, especially renal tubular cells. To investigate the classification and transcriptomic information of human kidney, we performed a method to obtain single-cell suspension of kidney rapidly, and conducted single-cell RNA sequencing (scRNA-seq). We present scRNA-seq data of 22,808 high quality cells from human kidneys of 3 donors. In this dataset, we show 13 clusters of normal human renal cells. Due to the high quality of single cell transcriptomic information, proximal tubule (PT) cells were classified into 6 subtypes and collecting ducts cells into 2 subtypes. Collectively, our data will provide a reliable reference for the studies of renal cell biology and kidney diseases.
DOI: 10.6084/m9.figshare.8131271
title: Supporting Information 20190515.pdf

description: Highly Atroposelective Synthesis of Nonbiaryl Naphthalene-1,2-diamine N-C Atropisomers through Direct Enantioselective C-H Amination
DOI: 10.6084/m9.figshare.8131271.v1
title: Supporting Information 20190515.pdf

description: Highly Atroposelective Synthesis of Nonbiaryl Naphthalene-1,2-diamine N-C Atropisomers through Direct Enantioselective C-H Amination
DOI: 10.6084/m9.figshare.8131259
title: Figure6 data

description: Figure 6 data
DOI: 10.6084/m9.figshare.8131259.v1
title: Figure6 data

description: Figure 6 data
DOI: 10.6084/m9.figshare.8131244
title: all data

description: This is a set of dna binding protein data and experimental code.
DOI: 10.6084/m9.figshare.8131244.v1
title: all data

description: 这是一组DNA结合蛋白数据和实验代码。
DOI: 10.6084/m9.figshare.8131238
title: Figure5 data

description: <b>Figure 5 data</b><br>
DOI: 10.6084/m9.figshare.8131238.v1
title: Figure5 data

description: <b>Figure 5 data</b><br>
DOI: 10.6084/m9.figshare.8131232
title: Mesorhizobium biogeograph R-scripts data

description: All data and metadata required to run R scripts located here: https://github.com/alexgreenlon/meso_biogeo
DOI: 10.6084/m9.figshare.8131229
title: Figure3 data

description: <b>Figure 3</b>
DOI: 10.6084/m9.figshare.8131229.v1
title: Figure3 data

description: <b>Figure 3</b>
DOI: 10.6084/m9.figshare.8131226
title: Figure2 data

description: <b>Figure 2</b>
DOI: 10.6084/m9.figshare.8131226.v1
title: Figure2 data

description: <b>Figure 2</b>
DOI: 10.6084/m9.figshare.8131220
title: Supplemental gene lists to accompany Figure 5b-g. MCL Clustering of tfap2a;tfap2c knockout associated genes with genotypes as sample name.

description: Clustering of RNA-Seq data
DOI: 10.6084/m9.figshare.8131214
title: Figure4 data

description: <b>Figure 4</b>
DOI: 10.6084/m9.figshare.8131214.v1
title: Figure4 data

description: <b>Figure 4</b>
DOI: 10.6084/m9.figshare.8131184
title: Iranian Dental Association Election

description: پیام‌های یکی از گروه‌های تلگرامی را در دوران انتخابات انجمن دندان‌پزشکی ایران در سال ۱۳۹۷ تحلیل کردیم. این‌جا کدهای مورد استفاده و نتایج گذاشته شده است.<br>
DOI: 10.6084/m9.figshare.8131082
title: Mesorhizobium prokka genome annotations

description: General feature format (gff) files generated by prokka genome annotation software (version 1.3) of draft and single-scaffold genomes of bacteria from the genus Mesorhizobium, isolated from chickpea root nodules.