cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/5g4-km9-qe1
title: Annelida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zwa-rbe-8x8
title: Tetrabothrius (Tetrabothrius) macrocephalus (Rudolphi, 1808) Rudolphi, 1819

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1zw-mdh-vsz
title: Parafilaroides gymnurus (Railliet, 1899) Dougherty, 1946

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/acd-s9q-sxx
title: Ascocotyle septentrionalis (Van den Broek, 1967) Gustinelli, Caffara, Scaravelli, Fioravanti & Scholz, 2021

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ksb-b66-2rj
title: Paramphistomum Fischoeder, 1901

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s3l-1fq-31y
title: Rhodopsis pusilla Bush, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rfw-xfs-j27
title: Hydroides dirampha Mörch, 1863

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x6s-ven-fyb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dt8-crq-614
title: Alitta succinea (Leuckart, 1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qhx-q4d-6yy
title: Syllis Lamarck, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xyb-gkd-00v
title: Harmothoe imbricata (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25378/janelia.24262906
title: Manual organelle segmentations (crop357) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-2)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of nucleus in jrc_mus-liver-zon-2 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop357<b>Primary Annotator</b>: Rebecca Vorimo<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 32 x 32 x 32 (x, y, z)<b>Annotated data dimensions (µm)</b>: 48 x 48 x 48 (x, y, z)<b>Annotated data offset (nm)</b>: 76812 x 48012 x 208012 (x, y, z)<b>Classes annotated</b>: nucleus<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver-zon-2/jrc_mus-liver-zon-2.zarr/recon-1/labels/groundtruth/crop357<b>Source (EM) dataset ID</b>: jrc_mus-liver-zon-2<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 210 x 155.73 x 426.69 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24135486<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-2<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.25378/janelia.24262906.v1
title: Manual organelle segmentations (crop357) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-2)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of nucleus in jrc_mus-liver-zon-2 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop357<b>Primary Annotator</b>: Rebecca Vorimo<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 32 x 32 x 32 (x, y, z)<b>Annotated data dimensions (µm)</b>: 48 x 48 x 48 (x, y, z)<b>Annotated data offset (nm)</b>: 76812 x 48012 x 208012 (x, y, z)<b>Classes annotated</b>: nucleus<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver-zon-2/jrc_mus-liver-zon-2.zarr/recon-1/labels/groundtruth/crop357<b>Source (EM) dataset ID</b>: jrc_mus-liver-zon-2<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 210 x 155.73 x 426.69 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24135486<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-2<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.3535/d1t-xxp-61t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/phe-zc4-tw6
title: Dugesia Girard, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tkp-x3e-bwt
title: Cosmocerca ornata (Dujardin, 1845) Diesing, 1861

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4yw-804-rjg
title: Paradujardinia halicoris (Owen, 1833) Travassos, 1933

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/em0-ear-ygp
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/reb-r87-nb9
title: Ancylostoma caninum (Ercolani, 1859) Hall, 1913

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mrr-bwm-s7w
title: Diplopleura curacaoensis Stiasny-Wijnhoff, 1925

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nxt-l3f-e32
title: Lanice conchilega (Pallas, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h3p-yy4-jbg
title: Heteromastus filiformis (Claparède, 1864)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vxy-gjn-x1g
title: Circeis spirillum (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p6a-by6-dwj
title: Nephtys hombergii Savigny in Lamarck, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vd7-a0x-e5g
title: Ophelina ehlersi (Horst, 1919)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ars-53v-dyy
title: Notocotylus attenuatus (Rudolphi, 1809) Kossack, 1911

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x7n-d6x-y7v
title: Nephtys hombergii Savigny in Lamarck, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8fv-ptc-pf1
title: Anoplocephalidae Cholodkovsky, 1902

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ah1-t49-6jd
title: Notocotylus attenuatus (Rudolphi, 1809) Kossack, 1911

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/akf-2y3-lqe
title: Bylgides promamme (Malmgren, 1867)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kjp-fhh-g74
title: Nephtys hombergii Savigny in Lamarck, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3mq-xll-6cd
title: Nephtys cirrosa Ehlers, 1868

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mfh-dyr-lfn
title: Nemertea

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cb8-elq-vc5
title: Chloeia incerta Quatrefages, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kfd-9r5-y4f
title: Lamellibrachia luymesi van der Land & Nørrevang, 1975

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z4h-pq0-16c
title: Protula bispiralis (Savigny, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25378/janelia.24262903
title: Manual organelle segmentations (crop356) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-2)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of peroxisome, mitochondria in jrc_mus-liver-zon-2 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop356<b>Primary Annotator</b>: Diana Ramirez<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 32 x 32 x 32 (x, y, z)<b>Annotated data dimensions (µm)</b>: 6.4 x 6.4 x 6.4 (x, y, z)<b>Annotated data offset (nm)</b>: 108812 x 67212 x 345612 (x, y, z)<b>Classes annotated</b>: peroxisome, mitochondria<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver-zon-2/jrc_mus-liver-zon-2.zarr/recon-1/labels/groundtruth/crop356<b>Source (EM) dataset ID</b>: jrc_mus-liver-zon-2<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 210 x 155.73 x 426.69 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24135486<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-2<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.25378/janelia.24262903.v1
title: Manual organelle segmentations (crop356) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-2)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of peroxisome, mitochondria in jrc_mus-liver-zon-2 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop356<b>Primary Annotator</b>: Diana Ramirez<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 32 x 32 x 32 (x, y, z)<b>Annotated data dimensions (µm)</b>: 6.4 x 6.4 x 6.4 (x, y, z)<b>Annotated data offset (nm)</b>: 108812 x 67212 x 345612 (x, y, z)<b>Classes annotated</b>: peroxisome, mitochondria<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver-zon-2/jrc_mus-liver-zon-2.zarr/recon-1/labels/groundtruth/crop356<b>Source (EM) dataset ID</b>: jrc_mus-liver-zon-2<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 210 x 155.73 x 426.69 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24135486<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-2<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.3535/7qh-l49-9vq
title: Schizocephala Serville, 1831

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wfy-54k-80q
title: Toxocara vitulorum (Goeze, 1782)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y2g-f86-zhk
title: Cerebratulus marginatus [Renier], [1804]

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1tj-d6r-m8v
title: Tubifex tubifex (Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/65x-bjn-r9g
title: Ancylostoma duodenale (Dubini, 1843) Creplin, 1845

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.pe2pg3
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coryphaenoides acrolepis (Bean, 1884)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 37 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039821-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/vca-9vv-70f
title: Lanice conchilega (Pallas, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1ja-wj3-9yg
title: Annelida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d62-yn1-v8z
title: Nephtys hombergii Savigny in Lamarck, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h23-46x-43t
title: Lepidonotus squamatus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/age-eb2-6g6
title: Tubulanus superbus (Kölliker, 1845)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k4w-xda-63n
title: Nephtys hombergii Savigny in Lamarck, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/280-yrz-3w7
title: Nectonemertes mirabilis Verrill, 1892

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rlp-x2e-zaj
title: Heterodrilus amplus Erséus, 1992

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gy5-s35-cpq
title: Valencinia longirostris Quatrefages, 1846

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/35z-tbc-7yx
title: Nephtys longosetosa Örsted, 1842

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s39-a2g-9jl
title: Ironus Bastian, 1865

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c8m-aen-ayh
title: Valencinia longirostris Quatrefages, 1846

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zym-8s6-4f3
title: Nephtys hombergii Savigny in Lamarck, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vyk-dfw-scp
title: Spio filicornis (Müller, 1776)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1jx-h5p-47f
title: Amphiporus multihastatus Joubin, 1910

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xva-9e0-423
title: Gibsonnemertes spectabilis (Quatrefages, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25378/janelia.24262900
title: Manual organelle segmentations (crop355) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-2)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of peroxisome, mitochondria in jrc_mus-liver-zon-2 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop355<b>Primary Annotator</b>: Rebecca Vorimo<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 32 x 32 x 32 (x, y, z)<b>Annotated data dimensions (µm)</b>: 6.4 x 6.4 x 6.4 (x, y, z)<b>Annotated data offset (nm)</b>: 59212 x 83212 x 352012 (x, y, z)<b>Classes annotated</b>: peroxisome, mitochondria<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver-zon-2/jrc_mus-liver-zon-2.zarr/recon-1/labels/groundtruth/crop355<b>Source (EM) dataset ID</b>: jrc_mus-liver-zon-2<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 210 x 155.73 x 426.69 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24135486<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-2<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.25378/janelia.24262900.v1
title: Manual organelle segmentations (crop355) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-2)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of peroxisome, mitochondria in jrc_mus-liver-zon-2 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop355<b>Primary Annotator</b>: Rebecca Vorimo<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 32 x 32 x 32 (x, y, z)<b>Annotated data dimensions (µm)</b>: 6.4 x 6.4 x 6.4 (x, y, z)<b>Annotated data offset (nm)</b>: 59212 x 83212 x 352012 (x, y, z)<b>Classes annotated</b>: peroxisome, mitochondria<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver-zon-2/jrc_mus-liver-zon-2.zarr/recon-1/labels/groundtruth/crop355<b>Source (EM) dataset ID</b>: jrc_mus-liver-zon-2<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 210 x 155.73 x 426.69 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24135486<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-2<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.3535/220-1cd-wpr
title: Cerebratulus gardineri Punnett, 1903

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3ae-gf7-v1e
title: Lamellibrachia luymesi van der Land & Nørrevang, 1975

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ey4-x5w-qrn
title: Trichinella spiralis (Owen, 1835) Railliet, 1895

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sej-mka-1se
title: Pontoscolex corethrurus (Muller, 1856)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.