cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3628955_d1.v1
title: MOESM1 of Transfection of Sertoli cells with androgen receptor alters gene expression without androgen stimulation

description: Addtional file 1: Table S1. Contains raw data (Cq values of reference and target genes) of quantitative RT-PCR analysis.
DOI: 10.6084/m9.figshare.c.3642413_d4.v1
title: Additional file 2: of Metassembler: merging and optimizing de novo genome assemblies

description: A1MetEventsTable.txt: Reported metassembly events (i.e. modifications to the primary assembly such as gaps closed, number of scaffold links, etc) for all Assemblathon1 metassemblies at each merging step. (TXT 24 kb)
DOI: 10.6084/m9.figshare.c.3661862_d9.v1
title: MOESM2 of Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass

description: Additional file 2: Table S1. Details of metabolites detected in the time course analysis of C. thermocellum grown on switchgrass.
DOI: 10.6084/m9.figshare.c.3661862_d9
title: MOESM2 of Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass

description: Additional file 2: Table S1. Details of metabolites detected in the time course analysis of C. thermocellum grown on switchgrass.
DOI: 10.6084/m9.figshare.c.3661880_d3.v1
title: Additional file 5: Table S5. of Comparative transcriptomics provide insight into the morphogenesis and evolution of fistular leaves in Allium

description: Table S5 Gene ontology (GO) terms enriched by genes of purifying selection in each species. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3661880_d3
title: Additional file 5: Table S5. of Comparative transcriptomics provide insight into the morphogenesis and evolution of fistular leaves in Allium

description: Table S5 Gene ontology (GO) terms enriched by genes of purifying selection in each species. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3661880_d5.v1
title: Additional file 6: Table S6. of Comparative transcriptomics provide insight into the morphogenesis and evolution of fistular leaves in Allium

description: Orthologous groups in which only the orthologous genes from the flat, solid-leaved species A. sativum and A. porrum were subjected to purifying selection. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3661880_d6.v1
title: Additional file 4: Table S4. of Comparative transcriptomics provide insight into the morphogenesis and evolution of fistular leaves in Allium

description: Positively selected nuclear genes in evolution. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3661880_d5
title: Additional file 6: Table S6. of Comparative transcriptomics provide insight into the morphogenesis and evolution of fistular leaves in Allium

description: Orthologous groups in which only the orthologous genes from the flat, solid-leaved species A. sativum and A. porrum were subjected to purifying selection. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3661880_d6
title: Additional file 4: Table S4. of Comparative transcriptomics provide insight into the morphogenesis and evolution of fistular leaves in Allium

description: Positively selected nuclear genes in evolution. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3662696_d1.v1
title: Additional file 1: of Assessing the performance of centralized waiting lists for patients without a regular family physician using clinical-administrative data

description: GACO Performance Data. Medians and ranges for each indicator by region and for the province of Quebec; significance testing for differences between regions; Pearson correlations between indicators. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3662696_d1
title: Additional file 1: of Assessing the performance of centralized waiting lists for patients without a regular family physician using clinical-administrative data

description: GACO Performance Data. Medians and ranges for each indicator by region and for the province of Quebec; significance testing for differences between regions; Pearson correlations between indicators. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3662702_d1.v1
title: Additional file 5: of A comparative genomic analysis of putative pathogenicity genes in the host-specific sibling species Colletotrichum graminicola and Colletotrichum sublineola

description: EXCEL file including detailed analysis of the genes of C. graminicola M1.001 and C. sublineola CgSl1. (XLSX 1703Â kb)
DOI: 10.6084/m9.figshare.c.3662702_d1
title: Additional file 5: of A comparative genomic analysis of putative pathogenicity genes in the host-specific sibling species Colletotrichum graminicola and Colletotrichum sublineola

description: EXCEL file including detailed analysis of the genes of C. graminicola M1.001 and C. sublineola CgSl1. (XLSX 1703Â kb)
DOI: 10.15468/dl.b2qbhd
title: Occurrence Download

description: A dataset containing 5206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enchelyopus cimbrius (Linnaeus, 1766)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 5206 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040304-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3705490_d14.v1
title: Additional file 8: Table S1. of Clock-dated phylogeny for 48% of the 700 species of Crotalaria (Fabaceae–Papilionoideae) resolves sections worldwide and implies conserved flower and leaf traits throughout its pantropical range

description: Species used in this study with herbarium vouchers, place of deposition (in a few cases also their barcodes), geographic origin, distribution ranges, and GenBank accession numbers for all sequences. Type species of Polhill’s [45] and Le Roux et al.’s [36] sections are listed with the respective sectional names and are marked with an asterisk. Newly sequenced species in bold. Native distribution areas are marked by an (N), those where a species has been introduced by an (I), and those where the status is uncertain by an (U). (XLSX 69 kb)
DOI: 10.6084/m9.figshare.c.3705490_d14
title: Additional file 8: Table S1. of Clock-dated phylogeny for 48% of the 700 species of Crotalaria (Fabaceae–Papilionoideae) resolves sections worldwide and implies conserved flower and leaf traits throughout its pantropical range

description: Species used in this study with herbarium vouchers, place of deposition (in a few cases also their barcodes), geographic origin, distribution ranges, and GenBank accession numbers for all sequences. Type species of Polhill’s [45] and Le Roux et al.’s [36] sections are listed with the respective sectional names and are marked with an asterisk. Newly sequenced species in bold. Native distribution areas are marked by an (N), those where a species has been introduced by an (I), and those where the status is uncertain by an (U). (XLSX 69 kb)
DOI: 10.6084/m9.figshare.c.3705571_d1.v1
title: Additional file 1: of Predictors of correct technique in patients using pressurized metered dose inhalers

description: Dataset. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3705571_d1
title: Additional file 1: of Predictors of correct technique in patients using pressurized metered dose inhalers

description: Dataset. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3721576_d5.v1
title: MOESM5 of Nonpher: computational method for design of hard-to-synthesize structures

description: Additional file 5. DR training set. It contains SMILES of 50,345 hard-to-synthesize structures (i.e., they are from a sparse region) and of 113,176 easy-to-synthesize structures (i.e., they are from a dense region).
DOI: 10.6084/m9.figshare.c.3721603_d1.v1
title: Additional file 10: Table S4. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

description: Genotype matrix of 248 genotypes across GWAS SNPs flanking/linked to Xa genes. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.c.3721576_d5
title: MOESM5 of Nonpher: computational method for design of hard-to-synthesize structures

description: Additional file 5. DR training set. It contains SMILES of 50,345 hard-to-synthesize structures (i.e., they are from a sparse region) and of 113,176 easy-to-synthesize structures (i.e., they are from a dense region).
DOI: 10.6084/m9.figshare.c.3721603_d1
title: Additional file 10: Table S4. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

description: Genotype matrix of 248 genotypes across GWAS SNPs flanking/linked to Xa genes. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.c.3721585_d8.v1
title: Additional file 17: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Data analyzed in Fig.Â 6. Spreadsheets showing the data analyzed in Fig.Â 6a and b. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3721603_d2.v1
title: Additional file 11: Table S5. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

description: Comparison of allele frequency of SNPs overlapping/flanking Xa genes between GWAS 198 indica genotypes and 1788 indica subset in 3Â k genomes. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3721603_d2
title: Additional file 11: Table S5. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

description: Comparison of allele frequency of SNPs overlapping/flanking Xa genes between GWAS 198 indica genotypes and 1788 indica subset in 3Â k genomes. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3721603_d3.v1
title: Additional file 12: Table S6. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

description: Most significant haplotypes associated with resistance to nine Xoo strains. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3721585_d8
title: Additional file 17: of 
                     Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

description: Data analyzed in Fig.Â 6. Spreadsheets showing the data analyzed in Fig.Â 6a and b. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3721603_d3
title: Additional file 12: Table S6. of Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

description: Most significant haplotypes associated with resistance to nine Xoo strains. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3726238_d7
title: Additional file 7: of Comparison of angle, shape, and position of articular processes in Dobermans and Great Danes with and without cervical spondylomyelopathy

description: Distance from the lateral edge of the cranial and caudal articular surfaces to the reference line in clinically normal Great Danes. Distance (in centimeters) from the lateral edge of the articular surface of the right and left cranial and caudal articular processes to the reference line in 15 clinically normal Great Danes (GD-N). (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3734194_d11
title: Additional file 8 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S7. DAVID enrichment analysis of AS-driven deregulation events among all sets of likely changes to the transcriptome across all transitions. Results of the analysis were converted to an Excel sheet without further changes. The exact methodology is described in the â  Methodsâ   section. (XLSX 101 kb)
DOI: 10.6084/m9.figshare.c.3734194_d11.v1
title: Additional file 8 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S7. DAVID enrichment analysis of AS-driven deregulation events among all sets of likely changes to the transcriptome across all transitions. Results of the analysis were converted to an Excel sheet without further changes. The exact methodology is described in the â  Methodsâ   section. (XLSX 101 kb)
DOI: 10.6084/m9.figshare.c.3734194_d12.v1
title: Additional file 9 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S8. Pathway enrichment analysis of rewiring events between proteins of the reduced set. Listed are pathways for which annotated interactions could be associated with rewiring events between proteins of the reduced set that were caused in a certain transition. The exact methodology is described in the â  Methodsâ   section. Significantly enriched pathway terms (adj.p&lt;0.05) were marked in green. Very small p-values were reported as 0.0 due to numerical reasons (computed in Python using SciPy version 0.17 [114]). (XLSX 114 kb)
DOI: 10.6084/m9.figshare.c.3734194_d12
title: Additional file 9 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S8. Pathway enrichment analysis of rewiring events between proteins of the reduced set. Listed are pathways for which annotated interactions could be associated with rewiring events between proteins of the reduced set that were caused in a certain transition. The exact methodology is described in the â  Methodsâ   section. Significantly enriched pathway terms (adj.p&lt;0.05) were marked in green. Very small p-values were reported as 0.0 due to numerical reasons (computed in Python using SciPy version 0.17 [114]). (XLSX 114 kb)
DOI: 10.15468/dl.yf6edd
title: Occurrence Download

description: A dataset containing 2212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Engraulis encrasicolus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 2212 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040305-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3734263_d1.v1
title: Additional file 1: Table S1. of The prevalence and impact of Babesia canis and Theileria sp. in free-ranging grey wolf (Canis lupus) populations in Croatia

description: Raw data for investigated wolves. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3734254_d2.v1
title: MOESM2 of Comparison of six methods to estimate adherence in an ART-naĂŻve cohort in a resource-poor setting: which best predicts virological and resistance outcomes?

description: Additional file 2. Study data on which manuscript analyses are based.
DOI: 10.6084/m9.figshare.c.3734263_d1
title: Additional file 1: Table S1. of The prevalence and impact of Babesia canis and Theileria sp. in free-ranging grey wolf (Canis lupus) populations in Croatia

description: Raw data for investigated wolves. (XLSX 27Â kb)
DOI: 10.5281/zenodo.14520935
title: EIC SiPM Test Dataset: SiPM Irradiation and Annealing Data

description: Data file used in 'Measurement of SiPM Dark Currents and Annealing Recovery for Fluences Expected in ePIC Calorimeters at the Future Electron-Ion Collider'. Data files consist of LabVIEW readout of 'Voltage, Current, Voltage, ...' pattern with Units of "Volt and Amp". Each folder separates SiPMs types and test performed on the SiPM.
DOI: 10.5281/zenodo.14520936
title: EIC SiPM Test Dataset: SiPM Irradiation and Annealing Data

description: Data file used in 'Measurement of SiPM Dark Currents and Annealing Recovery for Fluences Expected in ePIC Calorimeters at the Future Electron-Ion Collider'. Data files consist of LabVIEW readout of 'Voltage, Current, Voltage, ...' pattern with Units of "Volt and Amp". Each folder separates SiPMs types and test performed on the SiPM.
DOI: 10.15468/dl.4gspq4
title: Occurrence Download

description: A dataset containing 117373 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates catesbeianus (Shaw, 1802))"
 ]
}

 The dataset includes 117373 records from 266 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040299-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48324/dandi.001280/0.241218.2300
title: Closed-loop modulation of remote hippocampal representations with neurofeedback

description: Dorsal hippocampus CA1 extracellular recordings from male, Long Evans rats. Rats were engaged in a neurofeedback task during recording. This data was collected as part of the manuscript entitled "Closed-loop modulation of remote hippocampal representations with neurofeedback." Link to manuscript: https://www.biorxiv.org/content/10.1101/2024.05.08.593085v2.
DOI: 10.6084/m9.figshare.c.3747806_d1.v1
title: Additional file 1 of Learning from biomedical linked data to suggest valid pharmacogenes

description: SPARQL query example 1. This text file contains the SPARQL query we apply on our PGx linked data to obtain the data graph represented in Fig. 3. This query includes the definition of prefixes mentioned in Figs. 2 and 3. This query takes about 30 s on our https://pgxlod.loria.fr server. (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3751553_d47
title: Additional file 52: of The protein subunit of telomerase displays patterns of dynamic evolution and conservation across different metazoan taxa

description: Multiple sequence alignment of the N-terminal linker region in vertebrates. (FASTA 3Â kb)
DOI: 10.6084/m9.figshare.c.3767582_d8
title: Additional file 8: Tables S7. of Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance

description: List of annotation terms used to filter potentially ambiguous SNP calls. (XLSX 477 kb)
DOI: 10.6084/m9.figshare.c.3767627_d2.v1
title: Additional file 2: of Lost in translation: returning germline genetic results in genome-scale cancer research

description: Gene List, which includes the list of candidate genes selected for the RoR process. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3767636_d2.v1
title: Additional file 1: Table S1â  S4. of A comprehensive multi-omics approach uncovers adaptations for growth and survival of Pseudomonas aeruginosa on n-alkanes

description: RAST and PsDB annotations. (PPTX 38Â kb)
DOI: 10.6084/m9.figshare.c.3767627_d2
title: Additional file 2: of Lost in translation: returning germline genetic results in genome-scale cancer research

description: Gene List, which includes the list of candidate genes selected for the RoR process. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3767636_d2
title: Additional file 1: Table S1â  S4. of A comprehensive multi-omics approach uncovers adaptations for growth and survival of Pseudomonas aeruginosa on n-alkanes

description: RAST and PsDB annotations. (PPTX 38Â kb)
DOI: 10.15468/dl.d4f89c
title: Occurrence Download

description: A dataset containing 1707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Engraulis mordax Girard, 1854",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1707 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040308-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3770831_d2
title: Additional file 2: Table S1. of Myocardial and haemodynamic responses to two fluid regimens in African children with severe malnutrition and hypovolaemic shock (AFRIM study)

description: a Clinical features (median, interquartile range and standard deviation) and prevalence (n; %) of abnormal signs at different time points in group 1 (bolus + rehydration). b Clinical features (median, interquartile range and standard deviation) and prevalence (n; %) of abnormal signs at different time points in group two (rehydration-only). (ZIP 55 kb)
DOI: 10.6084/m9.figshare.c.3774314_d2
title: Additional file 2: of Horizontal gene transfer is not a hallmark of the human genome

description: Protein sequences for Ensembl genes in Tables 1 and 2. (FA 24 kb)
DOI: 10.6084/m9.figshare.c.3774320_d3.v1
title: Additional file 3: of On the impact of nonresponse in logistic regression: application to the 45 and Up study

description: Provides a forest plot of OR estimates and CIs under different modelling assumptions for the variable â  marital statutsâ  . (EMF 74Â kb)
DOI: 10.6084/m9.figshare.c.3774320_d2.v1
title: Additional file 2: of On the impact of nonresponse in logistic regression: application to the 45 and Up study

description: Provides a forest plot of OR estimates and CIs under different modelling assumptions for the variable â  work statusâ  . (EMF 135Â kb)
DOI: 10.6084/m9.figshare.c.3774320_d3
title: Additional file 3: of On the impact of nonresponse in logistic regression: application to the 45 and Up study

description: Provides a forest plot of OR estimates and CIs under different modelling assumptions for the variable â  marital statutsâ  . (EMF 74Â kb)
DOI: 10.6084/m9.figshare.c.3774320_d2
title: Additional file 2: of On the impact of nonresponse in logistic regression: application to the 45 and Up study

description: Provides a forest plot of OR estimates and CIs under different modelling assumptions for the variable â  work statusâ  . (EMF 135Â kb)
DOI: 10.6084/m9.figshare.c.3774320_d4.v1
title: Additional file 4: of On the impact of nonresponse in logistic regression: application to the 45 and Up study

description: Provides a forest plot of OR estimates and CIs under different modelling assumptions for the variable â  functional limitationâ  . (EMF 120Â kb)
DOI: 10.6084/m9.figshare.c.3774320_d4
title: Additional file 4: of On the impact of nonresponse in logistic regression: application to the 45 and Up study

description: Provides a forest plot of OR estimates and CIs under different modelling assumptions for the variable â  functional limitationâ  . (EMF 120Â kb)
DOI: 10.6084/m9.figshare.c.3774323_d1
title: MOESM1 of Substrates and oxygen dependent citric acid production by Yarrowia lipolytica: insights through transcriptome and fluxome analyses

description: Additional file 1. Figure S1. Biomass, products formation and substrate consumption in a pO2 uncontrolled culture of Y. lipolytica grown on a mixture of glycerol and spruce biomass hydrolysate. Figure S2. Gene ontology analysis of differentially expressed genes compared between pO2 controlled before vs. after glycerol limitation. Figure S3. Gene ontology analysis of differentially expressed genes compared between pO2 uncontrolled before vs. after glycerol limitation. Figure S4. Significant pathways and enzymes in the central metabolism of Y. lipolytica showing the differential gene expression between cell samples taken at pO2 controlled conditions before and after glycerol limitation (arrow). Figure S5. Flux distribution of Y. lipolytica grown on glycerol and glucose with pO2 control. Values are in mmol g DCW −1  h−1 normalized to glycerol uptake rate which is set as 100%. Arrows indicated flux towards biomass precursors.