cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/r70gf-7v970
title: Shewanella WT OMV

description: Shewanella outer membrane vesicles, WT, high resolution, -1 to -5 micron defocus. Reconstruct with included scripts for ctf-corrected bin1 tomogram.
description: <strong>Tilt Series Date:</strong> 2018-06-25</p>
<strong>Data Taken By:</strong> LaurenAnn Metskas</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 0.0 μm,  magnification: 82000x. </p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> IMOD 4.9.8, ctffind4, custom scripts</p>
<strong>Collaborators and Roles:</strong> purified by Lori Zacharoff in the El Naggar lab at USC; data collected by Lauren Ann Metskas; data processed by Lauren Ann Metskas</p>
<strong>Sample Preparation:</strong> quantifoil finder grid, 10nm BSA-gold, 100% humidity, double blotted</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-12/rawdata/</p>12_dose-filt.st,  Tilt Series (Pixel Size 0.1778 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-12/rawdata/12_dose-filt.st"
        > <i class="download icon"></i> Download </a></p>

        12_dose-filt.rec,  Reconstruction (Pixel Size 0.7112 nm), 861.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-12/3dimage_102427/12_dose-filt.rec"
        > <i class="download icon"></i> Download </a></p>

        TS_12.mrc.mdoc,  25.3 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-12/rawdata/TS_12.mrc.mdoc"
        > <i class="download icon"></i> Download </a></p>

        frames.tar.bz2,  zipped raw frames, 2.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-12/file_20057/frames.tar.bz2"
        > <i class="download icon"></i> Download </a></p>

        scripts.tar.bz2,  zipped processing scripts, 8.7 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-12/file_20058/scripts.tar.bz2"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.qfhsu5
title: Occurrence Download

description: A dataset containing 257290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lupinus polyphyllus"
 ]
}

 The dataset includes 257290 records from 493 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030456-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pf7ngf
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echeveria xichuensis"
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030529-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12832134
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.qfa7cg
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cygnus melancoryphus",
 "Country is United Arab Emirates",
 "HasCoordinate is true"
 ]
}

 The dataset includes 103 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030530-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16923758
title: Irrational Number Sequences
DOI: 10.5281/zenodo.16923759
title: Irrational Number Sequences
DOI: 10.15468/dl.puksss
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bugula neritina",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030531-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/fq0g7-z1078
title: MT310_xyl(+)_AuCl50uM(+)

description: Raw data files of MT310_xyl(+)_AuCl50uM(+)
description: <strong>Tilt Series Date:</strong> 2009-06-09</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> The MT310 strain was constructed by Martin Thanbichler; cells were cultured and treated by Zhuo Li; data were collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cells were induced by xylose and treated with 50 uM AuCl for 20 hours.</p>
<strong>Sample Preparation:</strong> 10 nm gold. </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-09-1/rawdata/</p>09jun09a_Au50uma_018.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-09-1/rawdata/09jun09a_Au50uma_018.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun09a_Au50uma_018_partlocal.rec,  Reconstruction (Pixel Size 1.9 nm), 471.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09jun09a_Au50uma_018local.rec,  Reconstruction (Pixel Size 1.9 nm), 146.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09jun09a_Au50uma_0181K.sqz,  Reconstruction (Pixel Size 1.9 nm), 69.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09jun09a_Au50uma_0181K.rec,  Reconstruction (Pixel Size 1.9 nm), 234.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09jun09a_Au50uma_0181K_full.rec,  Reconstruction (Pixel Size 1.9 nm), 906.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/q8b8g-5fr81
title: HUVECs CHMP4A+VPS4DN

description: HUVECs cells transfected with CHMP4A+VPS4DN constructs using Nucleofector Kit. Sample# C58-2
description: <strong>Tilt Series Date:</strong> 2011-03-31</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -7.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> CHMP4A and VPS4DN construct provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-03-31-14/3dimage_68427/</p>11mar31a_C_58-2_018_full.rec,  Reconstruction (Pixel Size 2.0 nm), 599.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        11mar31a_C_58-2_018.st,  Tilt Series (Pixel Size 0.5 nm), 255.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        11mar31a_C_58-2_018_vaultb.tiff,  file associated to 3D Image #68427, 924.2 kB  
        
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        > <i class="download icon"></i> Download </a></p>

        11mar31a_C_58-2_018_vault2.tiff,  file associated to 3D Image #68427, 1.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        11mar31a_C_58-2_018_vault.tiff,  file associated to 3D Image #68427, 907.8 kB  
        
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        > <i class="download icon"></i> Download </a></p>

        11mar31a_C_58-2_018_ovrview.tiff,  file associated to 3D Image #68427, 1.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.8ekwxj
title: Occurrence Download

description: A dataset containing 393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bugula neritina",
 "Country is Korea, Republic of",
 "HasCoordinate is true"
 ]
}

 The dataset includes 393 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030532-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/1j4ke-1t203
title: GFP-MreB overexpression

description: Raw data files of GFP-MreB overexpression
description: <strong>Tilt Series Date:</strong> 2007-04-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> TRH7000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.5°, constant angular increment, dosage: 189.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Strains were constructed by Maria Sandkvist (U. Michigan).  Data collected and processed by Zhuo Li.  </p>
  zla2007-04-21-1_slicer9361.jpg: Vibrio cholerae .  T6SS (15 nm) zla2007-04-21-1_slicer9362.jpg: Vibrio cholerae .  T6SS (15 nm) zla2007-04-21-1_slicer9364.jpg: Vibrio cholerae .  filament bundle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-04-21-1/3dimage_800/</p>vcgm422078507cts65w1dot518k12u000bin_full.rec,  Reconstruction (Pixel Size 2.518 nm), 796.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        vcgm422078507cts65w1dot518k12u000.mrc,  Tilt Series (Pixel Size 1.259 nm), 738.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        zl2007-04-21-1_clip01.rec,  Reconstruction (Pixel Size 0.0 nm) cropped by Sarah, 190.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        vcgm8507cts000.dm3,  16.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-04-21-1/file_980/vcgm8507cts000.dm3"
        > <i class="download icon"></i> Download </a></p>

        zl2007-04-21-1_clip01-label-Filament01.am,  filament segmented by Sarah, 1.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        zl2007-04-21-1_clip01-label-Filament02.am,  filament segmented by Sarah, 1.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.25912/rdf_1755829828474
title: Understanding the Service Landscape of Naturally Occurring Retirement Community Supportive Service Programs (NORC-SSPs) in New York State in Buildings
DOI: 10.22002/as3e1-ap540
title: FtsA/FtsZG109S o/e

description: filament segmented by Sarah
description: <strong>Tilt Series Date:</strong> 2007-08-19</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
  zla2007-08-19-4_slicer5282.jpg: Peptidoglycan zla2007-08-19-4_slicer5286.jpg: Unknown ring zla2007-08-19-4_slicer5290.jpg: Unknown zla2007-08-19-4_slicer5291.jpg: Unknown zla2007-08-19-4_slicer5293.jpg: Unknown granule zla2007-08-19-4_slicer5299.jpg: Unknown
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-08-19-4/rawdata/</p>ftsAZ10910um34k8197003.mrc,  Tilt Series (Pixel Size 0.64 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-08-19-4/rawdata/ftsAZ10910um34k8197003.mrc"
        > <i class="download icon"></i> Download </a></p>

        ftsAZ10910um34k81970031k.rec.mrc,  Reconstruction (Pixel Size 1.28 nm), 149.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        zl2007-08-19-4-label-Filament01.am,  filament segmented by Sarah, 2.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        zl2007-08-19-4-label-Filament02.am,  filament segmented by Sarah, 2.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        zl2007-08-19-4-label-Filament03.am,  filament segmented by Sarah, 2.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        zl2007-08-19-4-label-Filament04.am,  filament segmented by Sarah, 2.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.yvnv2r
title: Occurrence Download

description: A dataset containing 13162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((73.44576 35.44447,70.69842 29.63279,67.83106 24.55646,66.78874 22.02477,69.11341 18.85476,71.22675 11.45808,77.88376 3.85006,85.38611 3.1104,92.67713 4.16706,94.6848 -0.79928,98.59448 -5.65996,105.77983 -8.19596,109.26683 -10.3093,112.84417 -9.90274,114.72518 -9.30187,114.69905 -8.54424,114.46393 -8.12624,115.87468 -7.47311,116.37106 -6.76773,117.16943 -4.2702,118.28856 -1.27488,119.34186 0.56839,121.60578 2.67887,123.8995 4.33036,126.28498 5.01847,128.39521 6.11946,127.93646 10.24817,127.52359 13.27589,123.14786 19.71598,121.634 19.94535,120.30364 19.6701,119.1109 18.66086,118.33103 16.18364,115.53268 12.8348,111.12873 10.81632,110.02774 15.1744,108.37626 17.42225,107.45877 19.8536,107.29184 21.09251,107.97307 21.26913,108.04062 21.60522,107.36356 21.8168,106.88841 22.09301,106.78395 22.23665,106.71866 22.36722,106.78395 22.52392,106.82312 22.66755,106.86883 22.84383,106.71866 22.994,106.34651 22.994,105.98742 23.0854,105.78503 23.10499,105.55652 23.27474,105.41941 23.42491,105.26272 23.46408,105.06032 23.39226,104.68817 23.17681,104.63594 23.01359,104.39437 22.94177,104.1071 22.90912,103.9047 22.85036,103.6566 22.86995,103.31057 22.86342,103.04626 22.7324,102.80712 22.79478,102.75514 22.97153,102.2145 22.81558,102.12092 22.65962,101.79862 22.55565,101.39313 22.3997,101.48671 21.99421,101.59068 21.76548,101.71544 21.46397,101.64266 21.29762,101.37234 21.31841,101.25797 21.60953,101.20599 21.79667,101.02924 21.92144,100.76931 21.73429,100.03501 21.95507,99.3384 23.20317,98.38056 24.39321,98.81594 25.20593,99.07717 27.76017,97.80005 28.80509,96.40683 28.54386,95.29769 30.03316,91.90426 29.91197,89.0562 29.79078,83.66307 30.76033,82.14815 31.54809,80.51203 33.24481,78.45173 35.3051,76.27024 36.03227,73.44576 35.44447))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Shorea"
 ]
}

 The dataset includes 13162 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030533-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/jsd47-sk487
title: Xanthomonas WT

description: Xac WT pBRaφ pBRR MCS5 GFP (code 9)
description: <strong>Tilt Series Date:</strong> 2017-03-03</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Xanthomonas citri</p>
<strong>Strain:</strong> pv citri 306</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> TOMO3D</p>
<strong>Collaborators and Roles:</strong> Chuck Farah lab made the strain, data collected by Debnath Ghosal.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in 2xTY with apt antibiotics, freeze cells next day after about 14 hour when they are in stationary phase.</p>
<strong>Sample Preparation:</strong> Freezing conditions: Blot force 6, wait time=0, drain time =1 sec, blot time= 5 sec. ** Use 7 sec for next sessions.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-03-16/rawdata/</p>Xac_wt_20170303b10020.mrc,  Tilt Series (Pixel Size 0.39 nm), 2.3 GB  
        
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        Xac_wt_20170303b10020_SIRT_1k.rec,  Reconstruction (Pixel Size 0.0 nm), 1.1 GB  
        
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        Xac_wt_20170303b10020.ali,  463.3 MB  
        
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        Xac_wt_20170303b10020.tlt,  520.0 B  
        
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        Xac_wt_20170303b10020_fid.tlt,  520.0 B  
        
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        T4MK.mod,  1.0 kB  
        
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DOI: 10.15468/dl.86vbha
title: Occurrence Download

description: A dataset containing 985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophodytes cucullatus",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 985 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030534-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.