cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48610/dc2f523
title: Machine Learning Macropinocytosis

description: This collection hosts the imaging data from the ARC Discovery Project grant Machine Learning for Organelle Selection & Feature Detection in Live Cells (DP180101910). Data consists of large scale 4D microscopy datasets produced by the cutting edge Lattice Light Sheet Microscope at the Institute for Molecular Bioscience, capturing macrophage and cancer cells. This project aims to develop advanced machine learning techniques for the analysis of these datasets. The data includes the outputs of processing and analysis as well as the original imaging.
DOI: 10.48610/d77302b
title: Investigation of Supercapacitors using Molecular Dynamics Simulations

description: In today’s modern society, a wide range of electronic products, including mobile phones, laptops, cameras, pacemakers, hearing aids and electric vehicles, heavily rely on the energy storage technology behind them. Among promising candidates as future energy storage devices are batteries and electric double-layer supercapacitors (EDLSC). A striking difference between these two systems is that no chemical reactions occur on the electrodes of an EDLSC and energy is stored via ion adsorption on the electrodes, whereas energy is generated through chemical reactions involving the electrodes of a battery. Batteries are suitable for long-term energy storage whereas EDLSCs are ideal for repeated short-term power delivery, such as repetitive breaking in electric vehicles. In general, batteries possess high energy density whereas EDLSCs have high power density. However, energy storage devices often need to meet both power density and energy density requirements, so developing devices that achieve both is of importance. To advance the utility of EDLCS, it is vital to understand the molecular-level formation of charge layers in the vicinity of electrodes, or the electric double layers (EDLs) as this is a key factor for their performance.This project investigates the molecular-level behaviour of ionic liquids in the EDLs in response to applied potential difference.
DOI: 10.18112/openneuro.ds003216.v2.1.7
title: Whole brain layer-fMRI connectome: An open dataset
DOI: 10.48610/0cc8e97
title: Climate Change Refugia extended

description: Climate change is a driving force of changes to biodiversity worldwide and presents considerable management challenges for the resource-constrained environmental management sector. Effective management of biodiversity requires information about what species are present, how species respond to environmental conditions and which species are likely to be able to persist in the presence of ongoing change. Species distribution models are commonly used to predict future suitable habitat for particular species and areas of interest but a consistent nationwide approach is needed to understand how climate change will affect Australia’s biodiversity. Here [10.1080/14486563.2019.1599742] we describe a modelling approach that uses a consistent workflow and expert vetting to create current and future species distributions for 1872 terrestrial and freshwater vertebrate species. We used two emission scenarios, 18 General Circulation Models and seven time points into the future to explore how individual species distributions and taxa richness in Australia are predicted to change due to climate change. The maps can assist in both regional and national management and protection of biodiversity assets and conservation planning for the future. Importantly, extensive and intact regions need to be identified and protected, as intact ecosystems give biodiversity the greatest chance of adapting to climate change. We build on these existing data and methodologies to investigate biodiversity conservation priorities across Australia, accounting for the severe climate change future we are heading towards.
DOI: 10.48610/4565690
title: Zebrafish feeding assay behavioural analysis

description: We are investigating the detailed properties of hunting behaviour in larval zebrafish. This dataset comprises high speed video recordings of experiments in which larval zebrafish are placed in an arena with prey and observed while they hunt.
DOI: 10.48610/5e9ea88
title: Zebrafish model of Fragile X syndrome neural imaging

description: This project aims to investigate the development of neural codes and natural behaviours in a zebrafish model of Fragile X syndrome. We are collecting imaging data of neural response to prey like stimuli. We also collects recordings of social behaviours such as shoaling and conspecific interaction.
DOI: 10.48610/6b03a7c
title: Drosophila Sleep Multichannel

description: This dataset includes 16-channel local field potential recordings from behaving Drosophila melanogaster (Canton-S) flies. It includes a sample size of N = 19 flies, of minimum 12 hours recording duration sampled at 25kHz. It also includes video data and processed DeepLabCut videos tracking proboscis extension behaviour.
DOI: 10.15151/esrf-es-771244639
title: Structural and dynamical studies from the Gothenburg BAG

description: This BAG has been remodeled in 2021 so as to reflect the realities of ESRF usage. Several years ago, at the request of the ESRF, we merged with scientists at Lund University to create a joint Gothenburg/Lund BAG. In practice, as MAX IV Laboratory (Lund) has been increasingly successful at serving the needs of its users, demand for ESRF BAG time from scientists based in Lund decreased. We are therefore returning this BAG to be from scientists at the University of Gothenburg only, which both reflects the reality of the situation and simplifies management of the BAG. Moreover, our interests of scientists at the University of Gothenburg have become increasingly dominated by serial synchrotron crystallography applications and difference X-ray scattering. For these reasons our request for beamtime has changed to create more space for these methodology developments, while maintaining an appropriate request for access to more traditional cryo-crystallography approaches.
DOI: 10.15151/esrf-es-865155356
title: Humeri of Pederpes and the embolomere

description: Humeri of fossil Pederpes and the embolomere scanning at 6.5um to study trabeculae bone
DOI: 10.15151/esrf-es-771371366
title: Paris Rive-Gauche BAG: from structure to drug design

description: Our BAG was created in 2006 to federate well-established structural biology laboratories from south Paris. At present, several projects are investigated by different teams from 5 Institutes: (1) I2BC (Institut de Biologie Intégrative de la Cellule), (2) IBPC (Institut de Biologie Physico-Chimique), (3) INSERM (Institut National de la Santé et de la Recherche Médicale), (4) LBPA (Laboratoire de Biologie et Pharmacologie Appliquée) and (5) CiTCoM (Cibles Thérapeutiques et Conception de Médicaments, ex-name LCRB). Our research area focuses on many important biological systems involved in human pathology or infectious diseases, including molecular chaperones, DNA recombination, RNA maturation, ribosome biogenesis, telomerase assembly, bacterial toxins, malaria disease, neurodegenerative disease, drugs resistance and cell-signalling.
DOI: 10.15151/esrf-es-771376408
title: BAG BARCELONA

description: BAG Barcelona is constituted by 9 groups that belong to the Institute of Molecular Biology Barcelona from the Spanish Research Council (IBMB-CSIC), the Institute for Research in Biomedicine (IRB), and the Research Institute from Hospital Santa Creu i Sant Pau (HSCSP-IR). The main subjects of research are protein/DBA complexes, molecular machines, compounds of viruses, and the molecular mechanisms of proteases and other enzymes. Our Scientific results strongly rely on the high quality data and excellent performance and support of ESRF macromolecular crystallography beamlines.
DOI: 10.48610/cc72ae5
title: Multi-cam tracking of fly behaviour

description: High-speed videos from multiple camera views for tracking limb movements in tethered flies walking on a suspended ball
DOI: 10.14469/hpc/10604
title: C4O6 =&gt; 2CO2 + 2CO, C2 symmetry G = -603.728999

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10605
title: C4O6 =&gt; 2CO2 + 2CO, C2 symmetry water

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10606
title: C4O6 =&gt; 2CO2 + 2CO, C2 symmetry, water, IRC

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10607
title: C4O6 =&gt; 2CO2 + 2CO, C2 symmetry IRC

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10617
title: C4O6, NMR wB97Xd/aug-cc-pvdz 13C = 144.94 obs 148.2 calc.

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10618
title: C3O3 NMR (167 predicted, 156.6 calc)

description: Gaussian 16 (C01) calculation
DOI: 10.48610/11b5a49
title: Neuroanatomy of fly motor system

description: Confocal image stacks of neural circuits underlying fly motor behaviour
DOI: 10.48610/7e77091
title: Functional Imaging for fly motor circuits

description: Two-photon volumetric imaging data of fly motor circuits, in behaving flies or in dissected fly CNS with optogenetic stimulus.
DOI: 10.48610/67e2549
title: Investigating the role of Munc13 in secretory vesicle priming

description: Investigating the role of Munc13 in secretory vesicle priming
DOI: 10.48610/3bb4c69
title: Tabulation of knots and 3-manifolds

description: Comprehensive tables of knots and 3-manifold triangulations to support research in computational low-dimensional topology. These data sets include both the tales and the supporting data necessary to verify and reproduce them.
DOI: 10.48610/0d9d904
title: Munc18-1/Vamp2 interaction, priming and exoctyosis

description: Munc18-1/Vamp2 interaction, priming and exoctyosis
DOI: 10.48610/360e3cb
title: Zebrafish light sheet microscope neural imaging

description: This project is the investigation of neural coding and population activity at the whole-brain scale in larval zebrafish. We are imaging ~100000 neurons using a custom built light sheet microscope, enabling us to observe the activity of each neuron individually during rest periods with no stimulation, and during visual stimulation. These datasets will help us to understand how the brain represents information about the natural world and how it transforms sensoy input into behaviour.
DOI: 10.48610/c8578ab
title: Marsupial neurogenesis and neuroanatomy

description: This collection predominantly contains microscopy images of developing brains of marsupial and placental mammals. The project is focused around understanding how the brains of marsupial and placental mammals are similar and different in their patterns and timings of cell birth, connectivity and architecture
DOI: 10.48610/4a379cc
title: Seaview Survey Image Archive

description: The goal of the XL Catlin Seaview Survey Project was to conduct rapid, detailed yet globally distributed scientific surveys of coral reefs to support research and conservation. The focus was on surveying shallow reefs, typically located at 10 m depth on outer reef slope environments. This was done in order to provide a comprehensive baseline for coral reefs during a time in which the environmental conditions in tropical seas are changing rapidly.
DOI: 10.48610/29ab270
title: Super resolving Fyn at the nanoscale

description: Super resolving Fyn at the nanoscale
DOI: 10.48610/462adac
title: Sensory pathways in the scn1lab model of ASD (general pipeline screening)

description: This collection contains raw and processed calcium imaging data relevant to zebrafish larvae mutant for the scn1lab gene, which serves as a model of autism spectrum disorder. The goal of this project is to determine whether and how sensory processing is altered in these animals, thus shedding light on sensory anomalies seen is a subset of autistic people.
DOI: 10.48610/8b5b1b7
title: Zebrafish Behavioural Feeding Assay Old Data

description: This is a dataset of high speed video of larval zebrafish hunting prey in a small arena during a critical stage in development. The data were recorded to investigate the developmental trajectory of goal directed behaviours.
DOI: 10.48610/26604da
title: The role of Munc18-1 mutations in EIEE

description: The role of Munc18-1 mutations in EIEE
DOI: 10.48610/00b4f5a
title: ENS functional development

description: SPIM of ENS in germ-free, fed and unfed states
DOI: 10.6084/m9.figshare.20115293
title: Genetic Polymorphisms in the 3′-Untranslated Regions of SMAD5, FN3KRP, and RUNX-1 Are Associated with Recurrent Pregnancy Loss

description: The datasheet contains the result of typing genetic variants of three genes (SMAD5, FN3KRP, RINX-1). The each gene's genotype were analyzed by TaqMan probe using real-time PCR.
DOI: 10.6084/m9.figshare.20115293.v1
title: Genetic Polymorphisms in the 3′-Untranslated Regions of SMAD5, FN3KRP, and RUNX-1 Are Associated with Recurrent Pregnancy Loss

description: The datasheet contains the result of typing genetic variants of three genes (SMAD5, FN3KRP, RINX-1). The each gene's genotype were analyzed by TaqMan probe using real-time PCR.
DOI: 10.48610/34bd0e0
title: An Indian whole exome sequencing study to Identify ultra-rare schizophrenia risk variants

description: This project is designed to sequence individuals with schizophrenia and their family members, the DNAs of whom have been collected over many years in Chennai, Tamil Nadu, India. The aim is to discover genetic variants that contribute to the disease of schizophrenia and thereby facilitate a greater understanding of what causes this disease. Such a discovery may also contribute to the development of more effective medications.
DOI: 10.6084/m9.figshare.20115409
title: Additional file 2 of The GALNS p.P77R variant is a probable Gujarati-Indian founder mutation causing Mucopolysaccharidosis IVA syndrome

description: Additional file 2: Supplementary Table 2. List of single molecule molecular inversion probes for target capture of exons and exon-intron boundaries of the GALNS gene.
DOI: 10.6084/m9.figshare.20115409.v1
title: Additional file 2 of The GALNS p.P77R variant is a probable Gujarati-Indian founder mutation causing Mucopolysaccharidosis IVA syndrome

description: Additional file 2: Supplementary Table 2. List of single molecule molecular inversion probes for target capture of exons and exon-intron boundaries of the GALNS gene.
DOI: 10.6084/m9.figshare.20115412
title: Additional file 3 of The GALNS p.P77R variant is a probable Gujarati-Indian founder mutation causing Mucopolysaccharidosis IVA syndrome

description: Additional file 3: Supplementary File 1. Genotyped SNP output data from 13 MPS IVA patients and 63 controls used for haplotype analysis.
DOI: 10.6084/m9.figshare.20115412.v1
title: Additional file 3 of The GALNS p.P77R variant is a probable Gujarati-Indian founder mutation causing Mucopolysaccharidosis IVA syndrome

description: Additional file 3: Supplementary File 1. Genotyped SNP output data from 13 MPS IVA patients and 63 controls used for haplotype analysis.
DOI: 10.6084/m9.figshare.20115414
title: Additional file 2 of Diet evolution of carnivorous and herbivorous mammals in Laurasiatheria

description: Additional file 2: Table S1. Gene sequences with GenBank accession numbers used in this study.
DOI: 10.6084/m9.figshare.20115414.v1
title: Additional file 2 of Diet evolution of carnivorous and herbivorous mammals in Laurasiatheria

description: Additional file 2: Table S1. Gene sequences with GenBank accession numbers used in this study.
DOI: 10.6084/m9.figshare.20115417
title: Additional file 3 of Diet evolution of carnivorous and herbivorous mammals in Laurasiatheria

description: Additional file 3: Table S2. Positively selected genes identified by branch-site model. P values were corrected by multiply them by the number of branches tested of each gene (Bonferroni multiple testing correction).
DOI: 10.6084/m9.figshare.20115417.v1
title: Additional file 3 of Diet evolution of carnivorous and herbivorous mammals in Laurasiatheria

description: Additional file 3: Table S2. Positively selected genes identified by branch-site model. P values were corrected by multiply them by the number of branches tested of each gene (Bonferroni multiple testing correction).
DOI: 10.6084/m9.figshare.20115420
title: Additional file 4 of Diet evolution of carnivorous and herbivorous mammals in Laurasiatheria

description: Additional file 4: Table S3. Positively selected genes identified by branch model.
DOI: 10.6084/m9.figshare.20115420.v1
title: Additional file 4 of Diet evolution of carnivorous and herbivorous mammals in Laurasiatheria

description: Additional file 4: Table S3. Positively selected genes identified by branch model.
DOI: 10.6084/m9.figshare.20115423
title: Additional file 5 of Diet evolution of carnivorous and herbivorous mammals in Laurasiatheria

description: Additional file 5: Table S4. Positively selected genes identified by branch model.
DOI: 10.6084/m9.figshare.20115426.v1
title: Additional file 6 of Diet evolution of carnivorous and herbivorous mammals in Laurasiatheria

description: Additional file 6: Table S5. Tests of parallel evolution of the gene APOB between branches using software CAPE.
DOI: 10.57745/p6lin2/9l1n8u
title: curve-normalisation.R

description: :unav
DOI: 10.6084/m9.figshare.20115423.v1
title: Additional file 5 of Diet evolution of carnivorous and herbivorous mammals in Laurasiatheria

description: Additional file 5: Table S4. Positively selected genes identified by branch model.
DOI: 10.6084/m9.figshare.20115426
title: Additional file 6 of Diet evolution of carnivorous and herbivorous mammals in Laurasiatheria

description: Additional file 6: Table S5. Tests of parallel evolution of the gene APOB between branches using software CAPE.
DOI: 10.6084/m9.figshare.20115447
title: Additional file 1 of Identification of key apoptosis-related genes and immune infiltration in the pathogenesis of psoriasis

description: Additional file 1.
DOI: 10.6084/m9.figshare.20115447.v1
title: Additional file 1 of Identification of key apoptosis-related genes and immune infiltration in the pathogenesis of psoriasis

description: Additional file 1.
DOI: 10.6084/m9.figshare.20115462
title: Additional file 4 of Sparus aurata and Lates calcarifer skin microbiota under healthy and diseased conditions in UV and non-UV treated water

description: Additional file 4. Samples metadata file.
DOI: 10.6084/m9.figshare.20115462.v1
title: Additional file 4 of Sparus aurata and Lates calcarifer skin microbiota under healthy and diseased conditions in UV and non-UV treated water

description: Additional file 4. Samples metadata file.
DOI: 10.57745/zqzvpd/hqpvgm
title: t50-spline.R

description: R script
DOI: 10.6084/m9.figshare.19651217
title: Interactions between Water Evaporation and Surface Cracking in NaCl-Induced Homogeneous Silt Loam and Sand

description: The processes of soil cracking with water loss in saline soils are still not well understood. It is of great significances to further understand the mechanism of desiccation cracking in saline-alkali soil and provide guidance for engineering practice in saline-alkali area. Silt loam and sand samples were saturated with NaCl solutions (5, 50, and 100 g/L) and undergone the evaporation tests, during which the water loss and surface cracking parameters were obtained. Results showed that evaporation and crack development influenced each other. The evaporation rate for both sand and silt loam samples saturated by NaCl solution was lower than the reference samples, and decreased as the concentration of NaCl solution increased. In addition, the water content for both two types of samples first rapidly decreased and then entered a stable state during evaporation; however, silt loam soil moisture experienced a “second decline” when surface crack developed rapidly. Compared to the reference sample, NaCl solution inhibited crack development in silt loam, which in turn impeded water evaporation; however, no surface cracks were observed in sand samples. Furthermore, crack area and crack length decreased as the concentration of NaCl solution increased, and higher NaCl concentration resulted in an earlier abrupt increase in crack number followed by a stable state. The present findings reveal that the interaction between water evaporation and surface cracking is shown by soluble NaCl, including the chemical effects on soil particles from free Na<sup>+</sup> and the physical effects on soil pores from precipitated NaCl crystals during water loss.
DOI: 10.6084/m9.figshare.19651217.v1
title: Interactions between Water Evaporation and Surface Cracking in NaCl-Induced Homogeneous Silt Loam and Sand

description: The processes of soil cracking with water loss in saline soils are still not well understood. It is of great significances to further understand the mechanism of desiccation cracking in saline-alkali soil and provide guidance for engineering practice in saline-alkali area. Silt loam and sand samples were saturated with NaCl solutions (5, 50, and 100 g/L) and undergone the evaporation tests, during which the water loss and surface cracking parameters were obtained. Results showed that evaporation and crack development influenced each other. The evaporation rate for both sand and silt loam samples saturated by NaCl solution was lower than the reference samples, and decreased as the concentration of NaCl solution increased. In addition, the water content for both two types of samples first rapidly decreased and then entered a stable state during evaporation; however, silt loam soil moisture experienced a “second decline” when surface crack developed rapidly. Compared to the reference sample, NaCl solution inhibited crack development in silt loam, which in turn impeded water evaporation; however, no surface cracks were observed in sand samples. Furthermore, crack area and crack length decreased as the concentration of NaCl solution increased, and higher NaCl concentration resulted in an earlier abrupt increase in crack number followed by a stable state. The present findings reveal that the interaction between water evaporation and surface cracking is shown by soluble NaCl, including the chemical effects on soil particles from free Na<sup>+</sup> and the physical effects on soil pores from precipitated NaCl crystals during water loss.
DOI: 10.6084/m9.figshare.20115494
title: Raw data for Peng et al., 2022 Ecology Letters

description: Raw data for Peng et al., 2022 Ecology Letters.
DOI: 10.34740/kaggle/dsv/3844904
title: WallStreetBets 2022
DOI: 10.5285/a8e86b5e-f341-419e-be98-0463efe3201f
title: Wireline logging and core analysis datasets collected from Swanworth Quarry and Metherhills boreholes during the NERC funded Rapid Global Geological Events (RGGE) project

description: This dataset contains the collated wireline logs, stratigraphy and core analysis of the three boreholes drilled as part of the publicly funded Rapid Global Geological Events Project (RGGE) which ran between 1995-1998. The aim of the RGGE project was to identify the effects of climatic changes on modern sediments. The project focused on the Kimmeridge Clay due to its unbroken sequence of fossiliferous marine mudstones. These mudstones have compositional variations in organic content, minerolagy, fauna and clay content which reflect changes in both the climate and sea level. Over the course of the project the entire sequence of the Kimmeridge Clay was cored across three boreholes, two at Swanworth Quarry and one at Metherhills.