cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29485184
title: Application of Raman spectroscopy for the analysis of microplastics in food and beverages: a comprehensive review

description: Microplastics (MPs) are almost ubiquitous, and humans are continuously exposed to them by ingestion. The potential health risk of these emerging contaminants is associated with the small size that allows them to enter and accumulate in tissues. In addition, their ability to absorb and transport well-known toxic pollutants enhances their potential danger. Among numerous techniques developed to detect MPs, Raman spectroscopy is a nondestructive one that has been successfully used for their morphological and chemical characterization. This review analyzes 56 papers published over the past 10 years reporting on the use of Raman spectroscopy to investigate MP content in food and beverages. The data collected were discussed to enlighten common patterns and elaborated to manage a better comparison. Finally, a proposal for standardization of methods, protocols, and modality of data presentation and quantification is put forward.
DOI: 10.6084/m9.figshare.29485184.v1
title: Application of Raman spectroscopy for the analysis of microplastics in food and beverages: a comprehensive review

description: Microplastics (MPs) are almost ubiquitous, and humans are continuously exposed to them by ingestion. The potential health risk of these emerging contaminants is associated with the small size that allows them to enter and accumulate in tissues. In addition, their ability to absorb and transport well-known toxic pollutants enhances their potential danger. Among numerous techniques developed to detect MPs, Raman spectroscopy is a nondestructive one that has been successfully used for their morphological and chemical characterization. This review analyzes 56 papers published over the past 10 years reporting on the use of Raman spectroscopy to investigate MP content in food and beverages. The data collected were discussed to enlighten common patterns and elaborated to manage a better comparison. Finally, a proposal for standardization of methods, protocols, and modality of data presentation and quantification is put forward.
DOI: 10.20383/103.01206
title: Data for: Time and Zonally-varying Atmospheric Waveguides - Climatologies and Connections to Quasi-Stationary Waves

description: Data required to reproduce the main figures from the publication White and Mareshet Admasu, 2025, Time and Zonally-varying Atmospheric Waveguides - Climatologies and Connections to Quasi-Stationary Waves, Weather and Climate Dynamics. This includes waveguide data, stationary wavenumber and filtered zonal winds.
DOI: 10.20383/103.0920
title: Data and documentation for examining communities underfoot: understory plant, prokaryotic and organism-environment relationships in temperate forests

description: These are data associated with a manuscript in review and are files of vascular plant surveys, raw FASTQ 16S prokaryotic sequencing, pH, mean annual temperature and mean annual precipitation. See manuscript for more details.
DOI: 10.15468/dl.t2t7pe
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is Canada",
 "GadmGid is CAN.11_1",
 "TaxonKey is Clupea harengus"
 ]
 }
 ]
}

 The dataset includes 102 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004159-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5067/suborbital/step/radiation_aircraftinsitu_er2_data_1
title: STEP ER-2 Aircraft In-Situ Radiation Data
DOI: 10.5067/suborbital/step/radionuclide_aircraftinsitu_er2_data_1
title: STEP ER-2 Aircraft In-Situ Radionuclide Data
DOI: 10.5067/suborbital/step/tracegas_aircraftinsitu_er2_data_1
title: STEP ER-2 Aircraft In-Situ Trace Gas Data
DOI: 10.15468/dl.2tpeuy
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "StateProvince is Tamaulipas",
 "TaxonKey is Harpalyce arborescens"
 ]
}

 The dataset includes 49 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004160-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5067/suborbital/step/data001
title: STEP Campaign Data
DOI: 10.5067/suborbital/step/aerosol_aircraftinsitu_er2_data_1
title: STEP ER-2 Aircraft In-Situ Aerosol Data
DOI: 10.5067/suborbital/step/metnav_aircraftinsitu_er2_data_1
title: STEP ER-2 Aircraft In-Situ Meteorology and Navigational Data
DOI: 10.15468/my2unw
title: UF Florida Museum of Natural History Environmental Archaeology Comparative

description: The Environmental Archaeology Program’s modern comparative zoological collection includes over 12,000 individual specimens, representing major animal classes across multiple phyla such as Arthropoda, Chordata, Echinodermata, and Mollusca. The collection is particularly strong in specimens from Southeastern North America and the Caribbean, with growing representation from northwestern South America and Mesoamerica. Primarily supporting zooarchaeological research, the collection also serves as a valuable resource for biological and ecological studies.
DOI: 10.3886/e246087
title: Career impacts of Bullying in the NLSY97

description: These data allow for the replication of all results from "The long shadow of bullying: career consequences for an American cohort" Journal of Population Economics (2026)
DOI: 10.3886/e246087v1
title: Career impacts of Bullying in the NLSY97

description: These data allow for the replication of all results from "The long shadow of bullying: career consequences for an American cohort" Journal of Population Economics (2026)
DOI: 10.5067/is-40e/tempo/radt_l1.004
title: TEMPO geolocated Earth radiances twilight V04 (PROVISIONAL)
DOI: 10.15468/25avus
title: University of Florida Lepidoptery

description: The McGuire Center for Lepidoptera and Biodiversity represents the largest collections-based research and education center in the world focused on butterflies and moths. The collections are taxonomically comprehensive and contain more than 10 million specimens, which are widely used by an ever-growing global community of students and scientists. The Center documents past and present patterns of biological diversity and forms the basis for research ranging from global change and emerging agricultural pests, to evolution and biodiversity conservation.
DOI: 10.6084/m9.figshare.31382908
title: Sorghum recombinant inbred line (RIL) population genotyping

description: Tx2911/P850029 RIL population.
DOI: 10.6084/m9.figshare.31382908.v1
title: Sorghum recombinant inbred line (RIL) population genotyping

description: Tx2911/P850029 RIL population.
DOI: 10.15468/nelacx
title: University of Florida Vertebrate Paleontology

description: University of Florida Vertebrate Paleontology
DOI: 10.6084/m9.figshare.31054608
title: Not so endemic? Occurrence of Asiatic burrowing rodents (zokors) in the southern Fore-Urals localities of the Early and Middle Pleistocene

description: Currently, extant zokors (Myospalacidae) are Asian endemics, but their Pleistocene fossils indicate a wider distribution. These remains are important for understanding the evolution and palaeobiogeography of the group, yet they have not been studied in accordance with modern concepts of zokor phylogeny. In this paper, zokors from three Fore-Ural localities (European part of Russia) are studied. From the European Early Pleistocene localities of Akkulaevo and Simbugino, <i><b>Sibirosiphneus sukhovi </b></i><b>sp. nov</b>. is described, which is conspecific with the zokor from the Western Siberian Early Pleistocene locality of Lebyazhie. The zokor from the European Middle Pleistocene Chui-Atasevo locality is identified as the species <i>Myospalax myospalax</i>. By some archaic traits, these specimens are identified as the chronosubspecies <i>M. m. krukoveri</i>, described from several Western Siberian Middle Pleistocene localities. The presence of the same species in the Fore-Urals and Western Siberian localities indicates short periods of territorial expansion of <i>Sibirosiphneus</i> – <i>Myospalax</i> lineage into European Russia. During these intervals, the range of the Western Siberian zokor species exceeded the present-day range of <i>M. myospalax</i> by more than three times. https://zoobank.org/urn:lsid:zoobank.org:pub:9D8DCD17-4BD1-48E4-A0B7-F012A7A9C608
DOI: 10.6084/m9.figshare.31054608.v1
title: Not so endemic? Occurrence of Asiatic burrowing rodents (zokors) in the southern Fore-Urals localities of the Early and Middle Pleistocene

description: Currently, extant zokors (Myospalacidae) are Asian endemics, but their Pleistocene fossils indicate a wider distribution. These remains are important for understanding the evolution and palaeobiogeography of the group, yet they have not been studied in accordance with modern concepts of zokor phylogeny. In this paper, zokors from three Fore-Ural localities (European part of Russia) are studied. From the European Early Pleistocene localities of Akkulaevo and Simbugino, <i><b>Sibirosiphneus sukhovi </b></i><b>sp. nov</b>. is described, which is conspecific with the zokor from the Western Siberian Early Pleistocene locality of Lebyazhie. The zokor from the European Middle Pleistocene Chui-Atasevo locality is identified as the species <i>Myospalax myospalax</i>. By some archaic traits, these specimens are identified as the chronosubspecies <i>M. m. krukoveri</i>, described from several Western Siberian Middle Pleistocene localities. The presence of the same species in the Fore-Urals and Western Siberian localities indicates short periods of territorial expansion of <i>Sibirosiphneus</i> – <i>Myospalax</i> lineage into European Russia. During these intervals, the range of the Western Siberian zokor species exceeded the present-day range of <i>M. myospalax</i> by more than three times. https://zoobank.org/urn:lsid:zoobank.org:pub:9D8DCD17-4BD1-48E4-A0B7-F012A7A9C608
DOI: 10.15468/esqf9n
title: Acervo de Estruturas Calcificadas de Peixes - Collection of Fish Calcified Structures

description: Specimens with otoliths available from Rio Verde, Ponta Grossa Municipality, PR, Brazil (2016-2017).
Specimens from marine environments from the South-Southeastern Brazil (Atlantic Ocean).
DOI: 10.15468/efb17f
title: Triplehorn Insect Collection, The Ohio State University

description: Occurrence data from specimens housed in the Triplehorn Insect Collection at The Ohio State University. Data capture is an ongoing process. To date the greatest effort has focused on the orders Hymenoptera and Coleoptera. Specimens in the collection come from around the world, but the traditional geographical emphasis has been on the Midwestern and Southwestern United States.
DOI: 10.15468/dl.y48c3s
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "StateProvince is Tamaulipas",
 "TaxonKey is Havardia pallens"
 ]
}

 The dataset includes 220 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004161-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14934541
title: Nipah Virus Outbreak - West Bengal 2026 (WHO)
DOI: 10.5281/zenodo.18740246
title: Research data supporting: The Heterogeneous Solution Ensemble of the DEAD-box Protein Dhh1 Reveals a Modular Architecture

description: Zenodo Dataset (DOI: 10.5281/zenodo.18740247)

This repository contains the data to reproduce the results shown in the bioRxiv preprint "The Heterogeneous Solution Ensemble of the DEAD-box Protein Dhh1 Reveals a Modular Architecture" (DOI: 10.64898/2025.12.08.692948).

Zip Content

The .zip contains two main folders, one for atomistic simulations, and one for Coarse Grained simulations with CALVADOS. Also, in both folders there are results obtained with RanCh modelling. 

For atomistic simulations, a trajectory files Trajectory.T300xtc is present (1.3$\mu$s long), a production trajectory Trajectory_T300_Production.xtc (1$\mu$s long), together with a structure file <.gro> containing water and ions, a topology file <.top>, an index file <.ndx>. From the analysis, the average profile SaxsProfile.dat computed with Crysol, a PLUMED analysis file Plumed-rerun.dat that returns the timeseries and the free energy surface contained in Colvar.dat and Fes2d-Rg_Rmsd1s2m.dat (along with CA structures of Crystallographic and Canonical in PDB format) and the result of conformational clustering in Clustering.log.

For CG simulations, there are four folders , for full-length Dhh1 simulations with Constrained or Flexible core, and for single tails simulations. In the main folder there are a plumed.dat file containing the instructions to compute the SAXS profiles, the force-field parameters in <.csv> format, and the .yaml compatible with the CALVADOS framework. 



Flex contains the 3 replicas, along with the histograms of the core and the full length $R_g$ histograms, and the averaged SAXS profile.

Constrained contains the 44 initial structures, the 44 trajectories and the $R_g$ histograms and the resulting SAXS profile.

The two tails' folders contain a long trajectory and the $R_g$ histograms.


For modelling, each folder provides the files required by RanCh to generate the random-coil structures, a folder with the $10^4$ generated conformations, files with ensemble statistics and the average profiles.

Software version requirement

Atomistic

GROMACS 2021.4 

Plumed 2.8.0

Coarse Grained

OpenMM 8.2.0

CALVADOS framework (https://github.com/KULL-Centre/CALVADOS/tree/main)

Random Coil modelling

Ranch from ATSAS 4.0.0
DOI: 10.5281/zenodo.18740247
title: Research data supporting: The Heterogeneous Solution Ensemble of the DEAD-box Protein Dhh1 Reveals a Modular Architecture

description: Zenodo Dataset (DOI: 10.5281/zenodo.18740247)

This repository contains the data to reproduce the results shown in the bioRxiv preprint "The Heterogeneous Solution Ensemble of the DEAD-box Protein Dhh1 Reveals a Modular Architecture" (DOI: 10.64898/2025.12.08.692948).

Zip Content

The .zip contains two main folders, one for atomistic simulations, and one for Coarse Grained simulations with CALVADOS. Also, in both folders there are results obtained with RanCh modelling. 

For atomistic simulations, a trajectory files Trajectory.T300xtc is present (1.3$\mu$s long), a production trajectory Trajectory_T300_Production.xtc (1$\mu$s long), together with a structure file <.gro> containing water and ions, a topology file <.top>, an index file <.ndx>. From the analysis, the average profile SaxsProfile.dat computed with Crysol, a PLUMED analysis file Plumed-rerun.dat that returns the timeseries and the free energy surface contained in Colvar.dat and Fes2d-Rg_Rmsd1s2m.dat (along with CA structures of Crystallographic and Canonical in PDB format) and the result of conformational clustering in Clustering.log.

For CG simulations, there are four folders , for full-length Dhh1 simulations with Constrained or Flexible core, and for single tails simulations. In the main folder there are a plumed.dat file containing the instructions to compute the SAXS profiles, the force-field parameters in <.csv> format, and the .yaml compatible with the CALVADOS framework. 



Flex contains the 3 replicas, along with the histograms of the core and the full length $R_g$ histograms, and the averaged SAXS profile.

Constrained contains the 44 initial structures, the 44 trajectories and the $R_g$ histograms and the resulting SAXS profile.

The two tails' folders contain a long trajectory and the $R_g$ histograms.


For modelling, each folder provides the files required by RanCh to generate the random-coil structures, a folder with the $10^4$ generated conformations, files with ensemble statistics and the average profiles.

Software version requirement

Atomistic

GROMACS 2021.4 

Plumed 2.8.0

Coarse Grained

OpenMM 8.2.0

CALVADOS framework (https://github.com/KULL-Centre/CALVADOS/tree/main)

Random Coil modelling

Ranch from ATSAS 4.0.0
DOI: 10.5281/zenodo.18471892
title: Supplementary Tables for Webdoc & Narrative Visualization: Towards a  Possible Convergence Between Narrative, Interactive, and Data Visualization Genres

description: This dataset contains supplementary tables for the doctoral dissertation "Webdoc & Narrative Visualization: Towards a Possible Convergence Between Narrative, Interactive, and Data Visualization Genres" submitted to the University of Granada.

The tables include detailed information about 72 analyzed webdocs from a corpus of 87 candidates (2003-2025), including:- Analysis sheet- Complete webdoc corpus - Technical specifications and responsiveness analysis- Authorship and production data- Genre and narrative structure classifications- Development phases

The webdocs repository is also available at: https://webdocs-and-dataviz.softr.app/These materials support the research findings presented in the dissertation and enable replication of the study. 

Changelog: Version 1.1 - Corrected typographical error in annexes.
DOI: 10.5281/zenodo.18746000
title: Supplementary Tables for Webdoc & Narrative Visualization: Towards a  Possible Convergence Between Narrative, Interactive, and Data Visualization Genres

description: This dataset contains supplementary tables for the doctoral dissertation "Webdoc & Narrative Visualization: Towards a Possible Convergence Between Narrative, Interactive, and Data Visualization Genres" submitted to the University of Granada.

The tables include detailed information about 72 analyzed webdocs from a corpus of 87 candidates (2003-2025), including:- Analysis sheet- Complete webdoc corpus - Technical specifications and responsiveness analysis- Authorship and production data- Genre and narrative structure classifications- Development phases

The webdocs repository is also available at: https://webdocs-and-dataviz.softr.app/These materials support the research findings presented in the dissertation and enable replication of the study. 

Changelog: Version 1.1 - Corrected typographical error in annexes.
DOI: 10.15468/dl.k7pw5r
title: Occurrence Download

description: A dataset containing 928 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salamandra salamandra",
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2020",
 "Month is October"
 ]
}

 The dataset includes 928 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004163-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zt4fmb
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.46_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lonicera morrowii",
 "Year 1854-2025"
 ]
}

 The dataset includes 320 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004162-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ub6883
title: Occurrence Download

description: A dataset containing 50358 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-73.95566 40.59364,-73.4468 40.59364,-73.4468 41.14845,-73.95566 41.14845,-73.95566 40.59364))",
 "Geometry POLYGON((-74.17321 40.56246,-73.34822 40.56246,-73.34822 41.1921,-74.17321 41.1921,-74.17321 40.56246))"
 ]
 },
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Apidae, Andrenidae, Halictidae, Megachilidae, Colletidae, Melittidae, Stenotritidae)"
 ]
}

 The dataset includes 50358 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004137-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31390871
title: Environmental interpretations of pollen assemblages from the middle Eocene Clarno Formation of Oregon, USA

description: Fossil fruits, seeds and wood are documented from the Nut Beds of the middle Eocene Clarno Formation (central Oregon, USA) but little is known about the palynoflora. Here, we perform a pollen survey of three sites (Red Gap, White Cliffs Jr. and Nut Beds) using light microscopy. We used scanning electron microscopy to obtain better taxonomic resolution for pollen grains from each site and performed a probability-based Bioclimatic Analysis to obtain paleoclimate estimates. Overall, we identified 1 lycopod, 5 fern, 4 conifer, 1 cycad, 1 <i>Ephedra</i>, 65 angiosperms, 54 pollen or spores of unknown affinity, 2 fungal structures, and 1 additional non-pollen palynomorph taxon. Red Gap had the highest species richness (S = 53) followed by Nut Beds (S = 29) and White Cliffs Jr (S = 27). While unidentifiable pollen grains were a notable percentage of palynomorphs from each site ranging between 9–25.6% of an assemblage, Betulaceae and Juglandaceae were also common. Onagraceae is now recognized from the Nut Beds where no macrofossils had been recorded before. Bioclimatic Analysis revealed a mean annual temperature (MAT) of 12.4–14.1 °C and mean annual precipitation (MAP) of 955–1072 mm. The climatic estimates for the Nut Beds (12.4 °C and 955 mm) are likely underestimates of both temperature and precipitation since an analysis of combined macro- and microfossils yields a MAT of 18.5 °C and MAP of 1276 mm. This discrepancy may be explained by few grains being assigned to modern taxa and/or mesothermal plants tending to be more zoophilous and less likely to get preserved in the microfossil record. The Nut Beds are interpreted as a lacustrine delta due to the large amounts of dispersed cuticle, whereas White Cliffs Jr. and Red Gap are interpreted as stream fed lake deposits. The results highlight differences in biodiversity between each locality and differences in preservational bias among different plant organs.