cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8863535
title: Composite multi-objective optimization on a new collaborative vehicle routing problem with shared carriers and depots

description: This study proposes a novel logistics collaboration model to address the collaborative vehicle routing problem that involves shared carriers and depots (CVRP-SCD). This is inspired by the fact that a depot often has orders for multiple carriers, and a carrier often delivers orders to multiple depots. This problem involves decreasing transportation distances and improving capacity utilization by extending supply-side unilateral logistics collaborations to simultaneously consider collaborations between supply- and demand-sides. Further, the proposed CVRP-SCD model uses a composite objective that is a weighted sum of four objectives — including quality, reliability, cost, and time — to accurately evaluate and analyze the efficiency improvement. An extended variable neighborhood search (EVNS) algorithm is presented based on three matrices, including the carrier collaboration matrix (CCM), depot collaboration matrix (DCM), and transportation sequence matrix (TSM). This algorithm aims to address the trade-offs among multiple objectives for the CVRP-SCD problem by incorporating new operators based on specific features involved in the problem.
DOI: 10.6084/m9.figshare.8863529
title: Supplementary Material for: Positive Treatment Expectancies Reduce Clinical Pain and Perceived Limitations in Movement Ability Despite Increased Experimental Pain: A Randomized Controlled Trial on Sham Opioid Infusion in Patients with Chronic Back Pain

description: <b><i>Background:</i></b> Increasing evidence for the efficacy of analgesic placebo effects in laboratory studies with healthy persons raises the question whether placebos could be used to improve the treatment of pain patients. Expectancies play a central role in shaping analgesic placebo but also nocebo effects. <b><i>Objectives:</i></b> We investigated to what extent a sham opioid infusion (saline solution) produces sustained clinically relevant placebo and nocebo effects in chronic back pain patients. <b><i>Methods:</i></b> Fifty-nine patients received the sham opioid infusion applied via a large drain dressing and were compared to 14 control patients without intervention (natural history, NH) while experimental pain stimuli were applied. All subjects were told that the infusion would decrease pain although in rare cases pain increase would be possible (induction of expectancy). In addition, conditioning was introduced where the participants either experienced a decrease in experimental pain (<i>n</i> = 17; placebo conditioning), an increase (<i>n</i> = 21; nocebo conditioning), or no change (<i>n</i> = 21, no conditioning). <b><i>Results:</i></b> Compared to the NH group, all infusion groups showed positive treatment expectancies and significantly (<i>p</i> &lt; 0.001) reduced clinical back pain (primary outcome) and pain-related disability (secondary outcome, assessed by self-reported functional capacity and perceived impairment of mobility). Even the nocebo conditioned group experiencing increased experimental pain developed positive treatment expectancies followed by reduced pain experience. Positive treatment expectancies and relief in clinical back pain were significantly positively correlated (<i>r</i> = 0.72, <i>p</i> &lt; 0.01). <b><i>Conclusions:</i></b> These findings suggest that it may be beneficial to explicitly shape and integrate treatment expectancies into clinical pain management.
DOI: 10.21942/uva.8863457
title: Database SLR on project failures.xlsx

description: Systematic literature file
DOI: 10.6084/m9.figshare.8863415
title: Translated article: Integrative kognitive Verhaltenstherapie für die anhaltende Trauerstörung: Vorstellung eines Behandlungsmanuals

description: This paper introduces the integrative cognitive-behavioral<br>treatment manual for prolonged grief disorder. This outpatient<br>treatment manual is suited for persons who suffer from<br>severe, disabling, and persistent grief reactions for more than<br>6 months after the loss of a loved person. The treatment aims<br>at resolving grief complications and adjusting to life without<br>the deceased. Cognitive-behavioral treatment strategies are<br>combined with systemic and gestalt therapy techniques. 20<br>weekly sessions are divided into 3 phases. The first phase concentrates<br>on stabilizing and motivating. The second phase allows<br>for different foci: feelings of guilt, adjustment to new living<br>conditions, attachment to the deceased, or avoidance.<br>Employed techniques are prolonged exposure, cognitive restructuring,<br>and empty-chair work. In vivo exposition is applied<br>if necessary. The third phase focuses on future prospects<br>while maintaining a healthy bond to the deceased, and relapse<br>prevention. Up to 5 optional sessions directed toward<br>special or critical situations (e.g., anniversaries) can be added.<br>Altogether, the manual facilitates a feasible and effective<br>treatment of prolonged grief disorder.
DOI: 10.6084/m9.figshare.8863415.v1
title: Translated article: Integrative kognitive Verhaltenstherapie für die anhaltende Trauerstörung: Vorstellung eines Behandlungsmanuals

description: This paper introduces the integrative cognitive-behavioral<br>treatment manual for prolonged grief disorder. This outpatient<br>treatment manual is suited for persons who suffer from<br>severe, disabling, and persistent grief reactions for more than<br>6 months after the loss of a loved person. The treatment aims<br>at resolving grief complications and adjusting to life without<br>the deceased. Cognitive-behavioral treatment strategies are<br>combined with systemic and gestalt therapy techniques. 20<br>weekly sessions are divided into 3 phases. The first phase concentrates<br>on stabilizing and motivating. The second phase allows<br>for different foci: feelings of guilt, adjustment to new living<br>conditions, attachment to the deceased, or avoidance.<br>Employed techniques are prolonged exposure, cognitive restructuring,<br>and empty-chair work. In vivo exposition is applied<br>if necessary. The third phase focuses on future prospects<br>while maintaining a healthy bond to the deceased, and relapse<br>prevention. Up to 5 optional sessions directed toward<br>special or critical situations (e.g., anniversaries) can be added.<br>Altogether, the manual facilitates a feasible and effective<br>treatment of prolonged grief disorder.
DOI: 10.6084/m9.figshare.8863388
title: angus 2019 genomes from metagenomes

description: angus 2019 genomes from metagenomes
DOI: 10.6084/m9.figshare.8863388.v1
title: angus 2019 genomes from metagenomes

description: angus 2019 genomes from metagenomes
DOI: 10.6084/m9.figshare.8863364
title: Additional file 4: of Integrative genomic and transcriptomic analysis of genetic markers in Dupuytrenâ s disease

description: The results of functional enrichment analysis in Fig. 2d. (XLS 38 kb)
DOI: 10.6084/m9.figshare.8863361
title: Additional file 3: of Integrative genomic and transcriptomic analysis of genetic markers in Dupuytrenâ s disease

description: The identified red module genes (DD signature). (XLS 120 kb)
DOI: 10.6084/m9.figshare.8863364.v1
title: Additional file 4: of Integrative genomic and transcriptomic analysis of genetic markers in Dupuytrenâ s disease

description: The results of functional enrichment analysis in Fig. 2d. (XLS 38 kb)
DOI: 10.6084/m9.figshare.8863361.v1
title: Additional file 3: of Integrative genomic and transcriptomic analysis of genetic markers in Dupuytrenâ s disease

description: The identified red module genes (DD signature). (XLS 120 kb)
DOI: 10.6084/m9.figshare.8863334
title: Additional file 2: of PEPOP 2.0: new approaches to mimic non-continuous epitopes

description: Table S1. Comparison of 75 known epitopes with PEPOP predictions. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8863334.v1
title: Additional file 2: of PEPOP 2.0: new approaches to mimic non-continuous epitopes

description: Table S1. Comparison of 75 known epitopes with PEPOP predictions. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8863289
title: Additional file 9: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: Phylogeny from Additional file 8 in Newick format. (NWK 7 kb)
DOI: 10.6084/m9.figshare.8863286
title: Additional file 2: of Gender equity in planning, development and management of human resources for health: a scoping review

description: Table of the 110 included studies with their descriptive categories (country, region, professional group, setting, study design, and tool) and themes. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.8863286.v1
title: Additional file 2: of Gender equity in planning, development and management of human resources for health: a scoping review

description: Table of the 110 included studies with their descriptive categories (country, region, professional group, setting, study design, and tool) and themes. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.8863289.v1
title: Additional file 9: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: Phylogeny from Additional file 8 in Newick format. (NWK 7 kb)
DOI: 10.6084/m9.figshare.8863271
title: Additional file 7: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: Phylogeny from Fig. 3 in Newick format. (NWK 6 kb)
DOI: 10.6084/m9.figshare.8863268
title: Additional file 6: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: Phylogeny from Fig. 2b in Newick Format. (NWK 6 kb)
DOI: 10.6084/m9.figshare.8863265
title: Additional file 5: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: Phylogeny from Fig. 2a in Newick Format. (NWK 6 kb)
DOI: 10.6084/m9.figshare.8863271.v1
title: Additional file 7: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: Phylogeny from Fig. 3 in Newick format. (NWK 6 kb)
DOI: 10.6084/m9.figshare.8863259
title: MOESM3 of Discovering endometriosis biomarkers with multiplex cytokine arrays

description: Additional file 3. Supplemental Table S6.
DOI: 10.6084/m9.figshare.8863268.v1
title: Additional file 6: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: Phylogeny from Fig. 2b in Newick Format. (NWK 6 kb)
DOI: 10.6084/m9.figshare.8863265.v1
title: Additional file 5: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: Phylogeny from Fig. 2a in Newick Format. (NWK 6 kb)
DOI: 10.6084/m9.figshare.8863256
title: Additional file 4: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: Phylogeny from Additional file 3 in Newick format. (NWK 7 kb)
DOI: 10.6084/m9.figshare.8863256.v1
title: Additional file 4: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: Phylogeny from Additional file 3 in Newick format. (NWK 7 kb)
DOI: 10.6084/m9.figshare.8863259.v1
title: MOESM3 of Discovering endometriosis biomarkers with multiplex cytokine arrays

description: Additional file 3. Supplemental Table S6.
DOI: 10.6084/m9.figshare.8863241
title: Additional file 2: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: SlLYK8 ortholog sequences generated for this study. This is a Fasta-formatted text file containing the sequences generated from reads from several wild tomato species (Solanum peruvianum: peru, Solanum chilense: chil, Solanum lycopersicoides: lyco, and Solanum ochranthum: ochr) which were mapped to the region corresponding to SlLYK8 in Solanum lycopersicum. Unlike the rest of the LysM-RLK orthologs obtained from [19], these sequences were assessed with a minimum read depth of five sequences. The rest of the mapping procedure was the same as that used for the other sequences. (TXT 35 kb)
DOI: 10.6084/m9.figshare.8863238
title: MOESM1 of Discovering endometriosis biomarkers with multiplex cytokine arrays

description: Additional file 1. Supplemental Table S1.
DOI: 10.6084/m9.figshare.8863241.v1
title: Additional file 2: of The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

description: SlLYK8 ortholog sequences generated for this study. This is a Fasta-formatted text file containing the sequences generated from reads from several wild tomato species (Solanum peruvianum: peru, Solanum chilense: chil, Solanum lycopersicoides: lyco, and Solanum ochranthum: ochr) which were mapped to the region corresponding to SlLYK8 in Solanum lycopersicum. Unlike the rest of the LysM-RLK orthologs obtained from [19], these sequences were assessed with a minimum read depth of five sequences. The rest of the mapping procedure was the same as that used for the other sequences. (TXT 35 kb)
DOI: 10.6084/m9.figshare.8863238.v1
title: MOESM1 of Discovering endometriosis biomarkers with multiplex cytokine arrays

description: Additional file 1. Supplemental Table S1.
DOI: 10.6084/m9.figshare.8863226
title: Additional file 3: of Gene expression dynamics during the gonocyte to spermatogonia transition and spermatogenesis in the domestic yak

description: Table S3. Comparative analysis of transcriptomes between 8 and 24 months old yak testes. (XLSX 1600 kb)
DOI: 10.6084/m9.figshare.8863217
title: Additional file 2: of Gene expression dynamics during the gonocyte to spermatogonia transition and spermatogenesis in the domestic yak

description: Table S2. Comparative analysis of transcriptomes between 5 and 8 months old yak testes. (XLSX 989 kb)
DOI: 10.6084/m9.figshare.8863226.v1
title: Additional file 3: of Gene expression dynamics during the gonocyte to spermatogonia transition and spermatogenesis in the domestic yak

description: Table S3. Comparative analysis of transcriptomes between 8 and 24 months old yak testes. (XLSX 1600 kb)
DOI: 10.6084/m9.figshare.8863217.v1
title: Additional file 2: of Gene expression dynamics during the gonocyte to spermatogonia transition and spermatogenesis in the domestic yak

description: Table S2. Comparative analysis of transcriptomes between 5 and 8 months old yak testes. (XLSX 989 kb)
DOI: 10.6084/m9.figshare.8863208
title: Additional file 1: of Gene expression dynamics during the gonocyte to spermatogonia transition and spermatogenesis in the domestic yak

description: Table S1. Comparative analysis of transcriptomes between 3 and 5 months old yak testes. (XLSX 3910 kb)
DOI: 10.6084/m9.figshare.8863208.v1
title: Additional file 1: of Gene expression dynamics during the gonocyte to spermatogonia transition and spermatogenesis in the domestic yak

description: Table S1. Comparative analysis of transcriptomes between 3 and 5 months old yak testes. (XLSX 3910 kb)
DOI: 10.6084/m9.figshare.8862950
title: Additional file 1: of Antibiotic prophylaxis in ragged placental membranes: a prospective, multicentre, randomized trial

description: Contains tabulated anonymized raw patient data in XLSX Worksheet format. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.8862950.v1
title: Additional file 1: of Antibiotic prophylaxis in ragged placental membranes: a prospective, multicentre, randomized trial

description: Contains tabulated anonymized raw patient data in XLSX Worksheet format. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.8862656
title: Hepcidin and diabetes are independently related with soluble transferrin receptor levels in chronic dialysis patients

description: <b>Background:</b> Soluble transferrin receptor (sTfR) is a biomarker of erythropoiesis, which is often impaired in dialysis patients. The aim of our study was to evaluate sTfR levels in chronically dialyzed patients and assess potential determinants of its levels. <b>Methods:</b> We performed a cross-sectional study by evaluating 246 end-stage renal disease patients undergoing dialysis and 32 healthy controls. Circulating levels of interleukin (IL)-6, C-reactive protein (CRP), tumor necrosis factor (TNF)-α, hepcidin, sTfR, growth differentiation factor 15 (GDF15), and traditional iron metabolism markers were measured, as well as hemogram parameters. Clinical data was obtained from all patients. <b>Results:</b> Compared to controls, patients presented similar values of sTfR, reticulocytes and reticulocyte production index (RPI), and significantly higher levels of IL-6, CRP, ferritin, hepcidin, TNF-α, and GDF15. Iron, transferrin, hemoglobin levels, erythrocyte count, mean cell hemoglobin (MCH), and mean cell hemoglobin concentration (MCHC) values were significantly lower in dialysis group. Within patients, sTfR values were higher in diabetic patients and were positively and significantly correlated with reticulocytes and erythrocytes, RPI, and therapeutic doses of erythropoiesis stimulating agents (ESA) and intravenous iron; and inversely and significantly correlated with circulating iron, ferritin, transferrin saturation, hepcidin, MCH, and MCHC. In multiple linear regression analysis, ESA dose, RPI, serum iron, diabetes, and hepcidin levels were independently associated with sTfR levels in dialysis patients and, thus, with erythropoiesis. <b>Conclusion:</b> Our data suggest that, besides RPI and ESA dose, diabetes and hepcidin are closely related to erythropoiesis in dialysis patients. The influence of diabetes on sTfR levels deserves further investigation.
DOI: 10.6084/m9.figshare.8862656.v2
title: Hepcidin and diabetes are independently related with soluble transferrin receptor levels in chronic dialysis patients

description: <b>Background:</b> Soluble transferrin receptor (sTfR) is a biomarker of erythropoiesis, which is often impaired in dialysis patients. The aim of our study was to evaluate sTfR levels in chronically dialyzed patients and assess potential determinants of its levels. <b>Methods:</b> We performed a cross-sectional study by evaluating 246 end-stage renal disease patients undergoing dialysis and 32 healthy controls. Circulating levels of interleukin (IL)-6, C-reactive protein (CRP), tumor necrosis factor (TNF)-α, hepcidin, sTfR, growth differentiation factor 15 (GDF15), and traditional iron metabolism markers were measured, as well as hemogram parameters. Clinical data was obtained from all patients. <b>Results:</b> Compared to controls, patients presented similar values of sTfR, reticulocytes and reticulocyte production index (RPI), and significantly higher levels of IL-6, CRP, ferritin, hepcidin, TNF-α, and GDF15. Iron, transferrin, hemoglobin levels, erythrocyte count, mean cell hemoglobin (MCH), and mean cell hemoglobin concentration (MCHC) values were significantly lower in dialysis group. Within patients, sTfR values were higher in diabetic patients and were positively and significantly correlated with reticulocytes and erythrocytes, RPI, and therapeutic doses of erythropoiesis stimulating agents (ESA) and intravenous iron; and inversely and significantly correlated with circulating iron, ferritin, transferrin saturation, hepcidin, MCH, and MCHC. In multiple linear regression analysis, ESA dose, RPI, serum iron, diabetes, and hepcidin levels were independently associated with sTfR levels in dialysis patients and, thus, with erythropoiesis. <b>Conclusion:</b> Our data suggest that, besides RPI and ESA dose, diabetes and hepcidin are closely related to erythropoiesis in dialysis patients. The influence of diabetes on sTfR levels deserves further investigation.
DOI: 10.6084/m9.figshare.8862656.v1
title: Hepcidin and diabetes are independently related with soluble transferrin receptor levels in chronic dialysis patients

description: <b>Background:</b> Soluble transferrin receptor (sTfR) is a biomarker of erythropoiesis, which is often impaired in dialysis patients. The aim of our study was to evaluate sTfR levels in chronically dialyzed patients and assess potential determinants of its levels. <b>Methods:</b> We performed a cross-sectional study by evaluating 246 end-stage renal disease patients undergoing dialysis and 32 healthy controls. Circulating levels of interleukin (IL)-6, C-reactive protein (CRP), tumor necrosis factor (TNF)-α, hepcidin, sTfR, growth differentiation factor 15 (GDF15), and traditional iron metabolism markers were measured, as well as hemogram parameters. Clinical data was obtained from all patients. <b>Results:</b> Compared to controls, patients presented similar values of sTfR, reticulocytes and reticulocyte production index (RPI), and significantly higher levels of IL-6, CRP, ferritin, hepcidin, TNF-α, and GDF15. Iron, transferrin, hemoglobin levels, erythrocyte count, mean cell hemoglobin (MCH), and mean cell hemoglobin concentration (MCHC) values were significantly lower in dialysis group. Within patients, sTfR values were higher in diabetic patients and were positively and significantly correlated with reticulocytes and erythrocytes, RPI, and therapeutic doses of erythropoiesis stimulating agents (ESA) and intravenous iron; and inversely and significantly correlated with circulating iron, ferritin, transferrin saturation, hepcidin, MCH, and MCHC. In multiple linear regression analysis, ESA dose, RPI, serum iron, diabetes, and hepcidin levels were independently associated with sTfR levels in dialysis patients and, thus, with erythropoiesis. <b>Conclusion:</b> Our data suggest that, besides RPI and ESA dose, diabetes and hepcidin are closely related to erythropoiesis in dialysis patients. The influence of diabetes on sTfR levels deserves further investigation.
DOI: 10.6084/m9.figshare.8862401
title: RNAseq data of Pyropia yezoensis All-Unigene.fa.txt

description: Data set of all nucleotide sequences from RNAseq of the red seaweed<i> Pyropia yezoensis</i> <br>
DOI: 10.6084/m9.figshare.8862359
title: Table S1

description: Table S1
DOI: 10.6084/m9.figshare.8862359.v1
title: Table S1

description: Table S1
DOI: 10.6084/m9.figshare.8862284
title: New Zealand NIWA Climate Data Nearest to sampled soil sites

description: The final New Zealand NIWA climate data used for association analysis with <i>Streptomyces rpoB</i> diversity across New Zealand.<br>
DOI: 10.6084/m9.figshare.8862281
title: New Zealand NIWA climate data

description: A data set containing NIWA weather station information used to annotate climate variables for the 15 sampling sites used for the Streptomyces rpoB diversity analysis in New Zealand.<br>
DOI: 10.6084/m9.figshare.8862284.v1
title: New Zealand NIWA Climate Data Nearest to sampled soil sites

description: The final New Zealand NIWA climate data used for association analysis with <i>Streptomyces rpoB</i> diversity across New Zealand.<br>
DOI: 10.6084/m9.figshare.8862281.v1
title: New Zealand NIWA climate data

description: A data set containing NIWA weather station information used to annotate climate variables for the 15 sampling sites used for the Streptomyces rpoB diversity analysis in New Zealand.<br>
DOI: 10.6084/m9.figshare.8862200
title: Table S4. EPAS1 risk factor scoring used in McNemar’s Test with 102 matched pairs

description: <b>Table S4. </b> <i>EPAS1</i> risk factor scoring used in McNemar’s Test with 102 matched pairs
DOI: 10.6084/m9.figshare.8862200.v1
title: Table S4. EPAS1 risk factor scoring used in McNemar’s Test with 102 matched pairs

description: <b>Table S4. </b> <i>EPAS1</i> risk factor scoring used in McNemar’s Test with 102 matched pairs
DOI: 10.6084/m9.figshare.8862179
title: Table S3. EPAS1 haplotype frequencies in cases and controls.

description: Table S3. EPAS1 haplotype frequencies in cases and controls.
DOI: 10.6084/m9.figshare.8862152
title: Table S2. Summary of 36 possible EPAS1 diplotypes and their frequency in cases and controls.

description: Table S2. Summary of 36 possible EPAS1 diplotypes and their frequency in cases and controls.
DOI: 10.6084/m9.figshare.8862179.v1
title: Table S3. EPAS1 haplotype frequencies in cases and controls.

description: Table S3. EPAS1 haplotype frequencies in cases and controls.
DOI: 10.6084/m9.figshare.8862143
title: BOT vegetation by species

description: Vegetation cover, by species, in five boma occupation treatments (0,4,7,14, and 28 days), each replicated five times, during pre-treatment, year 2 and year 3 time periods.<br>See data file and Veblen, K.E. and L.M. Porensky. Thresholds are in the eye of the beholder: plants and wildlife respond differently to short-term cattle corrals. Ecological Applications, for further details.