cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5kp7ts31
title: MassIVE Reanalysis RMSV000000354.4796 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CNTN4 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5fx74005
title: MassIVE Reanalysis RMSV000000354.4798 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ACOT6 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5b56d576
title: MassIVE Reanalysis RMSV000000354.4802 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ING2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c56d5pc2k
title: MassIVE Reanalysis RMSV000000354.4804 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PARP11 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c52n4zj8t
title: MassIVE Reanalysis RMSV000000354.4800 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, MLF1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5xw47x3t
title: MassIVE Reanalysis RMSV000000354.4805 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CCDC53 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t43j40w
title: MassIVE Reanalysis RMSV000000354.4806 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, HTRA4 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5pg1hp7g
title: MassIVE Reanalysis RMSV000000354.4808 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, DPYS [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5jq0sw4t
title: MassIVE Reanalysis RMSV000000354.4807 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CCKBR [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5dz0330g
title: MassIVE Reanalysis RMSV000000354.4809 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, FAM90A1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5959c850
title: MassIVE Reanalysis RMSV000000354.4801 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PLEKHO1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c55d8ng1v
title: MassIVE Reanalysis RMSV000000354.4810 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, MGAT5B [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c51n7xn73
title: MassIVE Reanalysis RMSV000000354.4811 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, YIPF1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.7910/dvn/r0vxv5
title: pu and jv

description: On the relation between political uncertainty and international revenue sharing.
DOI: 10.5281/zenodo.6236340
title: Model data repository of "Styles of Trench-parallel Mid-ocean Ridge Subduction Affect Cenozoic Geological Evolution in circum-Pacific Continental Margins"

description: This dataset contains the data used in Wu et al. (2022): "Styles of Trench-parallel Mid-ocean Ridge Subduction Affect Cenozoic Geological Evolution in circum-Pacific Continental Margins".
DOI: 10.5281/zenodo.5652362
title: Model data repository of "Styles of Trench-parallel Mid-ocean Ridge Subduction Affect Cenozoic Geological Evolution in circum-Pacific Continental Margins"

description: This dataset contains the data used in Wu et al. (2022): "Styles of Trench-parallel Mid-ocean Ridge Subduction Affect Cenozoic Geological Evolution in circum-Pacific Continental Margins".
DOI: 10.25345/c5ww77130
title: MassIVE Reanalysis RMSV000000354.4814 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, MIPEP [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5s756m2g
title: MassIVE Reanalysis RMSV000000354.4813 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CSN1S1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5ng4gs96
title: MassIVE Reanalysis RMSV000000354.4816 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PDCD1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5hq3s05g
title: MassIVE Reanalysis RMSV000000354.4818 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PHACTR2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5cz32607
title: MassIVE Reanalysis RMSV000000354.4820 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, OR8I2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5862bc6s
title: MassIVE Reanalysis RMSV000000354.4821 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PTGIR [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c54f1mk2n
title: MassIVE Reanalysis RMSV000000354.4817 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PALM2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19218447
title: Additional file 2 of De novo genome assembly and functional annotation for Fusarium langsethiae

description: Additional file 2.
DOI: 10.6084/m9.figshare.19218447.v1
title: Additional file 2 of De novo genome assembly and functional annotation for Fusarium langsethiae

description: Additional file 2.
DOI: 10.6084/m9.figshare.16779412
title: Additional file 10 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

description: Additional file 10. Commands used for the processing of BAM files. Commands used for the processing of the pipelines described in this study (see Fig. 1 for a graphical overview)
DOI: 10.6084/m9.figshare.16779412.v1
title: Additional file 10 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

description: Additional file 10. Commands used for the processing of BAM files. Commands used for the processing of the pipelines described in this study (see Fig. 1 for a graphical overview)
DOI: 10.6084/m9.figshare.16779418
title: Additional file 2 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

description: Additional file 2. Information about the individuals included in the processing pipelines comparison. Individuals IDs in this and original studies
DOI: 10.6084/m9.figshare.16779418.v1
title: Additional file 2 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

description: Additional file 2. Information about the individuals included in the processing pipelines comparison. Individuals IDs in this and original studies
DOI: 10.6084/m9.figshare.16779421
title: Additional file 3 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

description: Additional file 3. Quality control and variant counts (pipeline “BP2019”) by individuals and averaged by dataset or ancestry. Various quality control metrics relative to mapping, as well as variant counts—including percentage of variants in dbSNP v.151
DOI: 10.6084/m9.figshare.16779421.v1
title: Additional file 3 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

description: Additional file 3. Quality control and variant counts (pipeline “BP2019”) by individuals and averaged by dataset or ancestry. Various quality control metrics relative to mapping, as well as variant counts—including percentage of variants in dbSNP v.151
DOI: 10.6084/m9.figshare.19218468
title: Additional file 2 of Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery

description: Additional file 2: Supplementary Table S1.
DOI: 10.6084/m9.figshare.19218468.v1
title: Additional file 2 of Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery

description: Additional file 2: Supplementary Table S1.
DOI: 10.25345/c50p0wr9c
title: MassIVE Reanalysis RMSV000000354.4819 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SRPRB [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5w08wh60
title: MassIVE Reanalysis RMSV000000354.4823 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SYP [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19218552
title: Additional file 3 of Paradigm versus paradox on the prairie: testing competing stream fish movement frameworks using an imperiled Great Plains minnow

description: Additional file 3. This file contains the R code used in this manuscript and data files used in analysis.
DOI: 10.6084/m9.figshare.19218552.v1
title: Additional file 3 of Paradigm versus paradox on the prairie: testing competing stream fish movement frameworks using an imperiled Great Plains minnow

description: Additional file 3. This file contains the R code used in this manuscript and data files used in analysis.
DOI: 10.6084/m9.figshare.19218600.v1
title: Additional file 1 of Physical activity specifically evokes release of cell-free DNA from granulocytes thereby affecting liquid biopsy

description: Additional file 1. NNLS deconvolution table.
DOI: 10.6084/m9.figshare.19218600
title: Additional file 1 of Physical activity specifically evokes release of cell-free DNA from granulocytes thereby affecting liquid biopsy

description: Additional file 1. NNLS deconvolution table.
DOI: 10.6084/m9.figshare.19218765
title: Additional file 2 of Rare disorders have many faces: in silico characterization of rare disorder spectrum

description: Additional file 2. This .xlsx file contains supplementary tables (Tables S2–S3). Table S2. Overview of borderline-common disorders based on Orphadata and our predefined criteria. Table S3. Overview of the enriched Reactome pathways for each of the disorder categories, borderline-common, rare, and ultra-rare disorder category, focusing specifically on Homo Sapiens genes.
DOI: 10.6084/m9.figshare.19218765.v1
title: Additional file 2 of Rare disorders have many faces: in silico characterization of rare disorder spectrum

description: Additional file 2. This .xlsx file contains supplementary tables (Tables S2–S3). Table S2. Overview of borderline-common disorders based on Orphadata and our predefined criteria. Table S3. Overview of the enriched Reactome pathways for each of the disorder categories, borderline-common, rare, and ultra-rare disorder category, focusing specifically on Homo Sapiens genes.
DOI: 10.6084/m9.figshare.19218771
title: Additional file 3 of Rare disorders have many faces: in silico characterization of rare disorder spectrum

description: Additional file 3. This RAR compressed .xlsx file contains our categorization of HPO terms to the disorder categories, borderline-common, rare and ultra-rare, and the HPO co-occurrence matrix for the RD spectrum.
DOI: 10.6084/m9.figshare.19218771.v1
title: Additional file 3 of Rare disorders have many faces: in silico characterization of rare disorder spectrum

description: Additional file 3. This RAR compressed .xlsx file contains our categorization of HPO terms to the disorder categories, borderline-common, rare and ultra-rare, and the HPO co-occurrence matrix for the RD spectrum.