cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3640424_d4.v1
title: MOESM4 of Feature selection and validated predictive performance in the domain of Legionella pneumophila: a comparative study

description: Additional file 4. Feature set RF.
DOI: 10.6084/m9.figshare.c.3640424_d6.v1
title: MOESM3 of Feature selection and validated predictive performance in the domain of Legionella pneumophila: a comparative study

description: Additional file 3. Feature set CART.
DOI: 10.6084/m9.figshare.c.3640433_d2.v1
title: Additional file 7: Table S6. of Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2

description: Sequencing LAD (sLAD) positions detected for the terminal part of chromosome 4. Data derived from 3 T3 MEFs40. Marked in yellow is the extensive sequence stretch bordering the CNV devoid of sLADs. Marked in green are the sLAD regions inside the CNV. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3640433_d1.v1
title: Additional file 10: Table S9. of Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2

description: GO â  condensed nuclear chromosomeâ   table of DE genes in df/+ Bl6 MEFs. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3640433_d3.v1
title: Additional file 8: Table S7. of Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2

description: BACS used for selected PE-4Cseq and chromatin decompaction regions. a) Location of BACs used in 3D DNA FISH experiments for the validation of df PE-4Cseq DIRs and chromatin decompaction. b) Number of CTCF, Med1, Med12, and Smc1 protein binding sites33 overlapping each BAC used for 3D DNA FISH experiments. c) Proportions of CTCF, Med1, Med12, and Smc133 protein binding sites overlapping each BAC used for 3D DNA FISH experiments normalized by BAC size. (XLSX 377 kb)
DOI: 10.6084/m9.figshare.c.3640433_d5.v1
title: Additional file 6: Table S5. of Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2

description: (a) Summary of df DIRs overlap with CTCF, Mediator, and cohesin binding sites. Column 1, Region, refers to the viewpoint assessed. Column 2, diffsites, refers to df DIRs. Column 4, no. sites and feature name corresponds to the number of DIRs that contain the specified genomic feature. Column 6, bp sites feature, presents the sum of DIRs bp which contain the specified feature. Column 8, no. features, indicates the number of features included inside DIRs. Percentages in columns 5, 7, and 9 are calculated based on the total number of regions or features in the preceding column. (b) Summary of df DIRs overlap with CTCF, Mediator, and cohesin binding sites. Column 1, Region, refers to the viewpoint assessed. Column 2, diffsites, refers to df DIRs. Column 4, no. sites and feature name corresponds to the number of DIRs that contain the specified genomic feature. Column 6, bp sites feature, presents the sum of DIRs bp which contain the specified feature. Column 8, no. features, indicates the number of features included inside the DIRs. Percentages in columns 5, 7, and 9 are calculated based on the total number of regions or features in the preceding column. (c) Summary of +  D Bl6 DIRs overlap for viewpoints 1, 2, 11, and 12 with CTCF, Mediator, and Smc1 binding sites. Column identities are as described in (a). (d) Summary of Monte Carlo simulations for assessing statistical significance of protein binding overlaps for +  D Bl6 DIRs for viewpoints 1, 2, 11, and 12. Column identities are as described in (b). Notice the significant p-values obtained for CTCF and Smc1 binding (p-val
DOI: 10.6084/m9.figshare.c.3640460_d1.v1
title: Additional file 1: of Enhancement of the BG-sentinel trap with varying number of mice for field sampling of male and female Aedes albopictus mosquitoes

description: Total data set of female and male Aedes albopictus recapture according to the replicate, the site, the location and the bait of the trap. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3640463_d2.v1
title: MOESM2 of Malaria intervention scale-up in Africa: effectiveness predictions for health programme planning tools, based on dynamic transmission modelling

description: Additional file 2. Coefficients and p values of OpenMalaria-based statistical impact functions.
DOI: 10.6084/m9.figshare.c.3640463_d3.v1
title: MOESM4 of Malaria intervention scale-up in Africa: effectiveness predictions for health programme planning tools, based on dynamic transmission modelling

description: Additional file 4. Predicted relative burden reductions from alternative statistical models, as part of the sensitivity analysis.
DOI: 10.6084/m9.figshare.c.3640472_d1.v1
title: Additional file 1: of Pregnant womensâ   concerns when invited to a randomized trial: a qualitative case control study

description: Topic list to guide the interview. (ZIP 13 kb)
DOI: 10.6084/m9.figshare.c.3640484_d1.v1
title: Additional file 1: Table 1. of Splenic artery embolization: technically feasible but not necessarily advantageous

description: Search results and number of articles retrieved after applying the selection criteria.After the initial search, all articles were entered in a reference database (Mendeley). Table 2. Summary table of articles that met inclusion criteria after initial selection. Articles marked in grey were excluded. Table 3. Traditionally used American Association for the Surgery of Trauma (AAST) scoring system for splenic injuries. Figure 1. Algorithm for management of splenic trauma modified from Ekeh and Tugnoli.8, 32 Abbreviations: HD: hemodynamically; BP: blood pressure; FAST: Focused Assessment with Sonography for Trauma; ICU: Intensive Care Unit; SAE: splenic artery embolization; MDCT: Multidetector CT grading (TableÂ 4); NOM: non operative management; CE: contrast extravasation; IV: intravenous. (ZIP 126 kb)
DOI: 10.6084/m9.figshare.c.3640538_d1.v1
title: Additional file 5: Table S5. of Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya

description: Relative abundance of microbial taxa at phylum level in various samples collected from the three hot springs (83.6, 81 and 45.1 °C) of L. Magadi and Little Magadi. ‘No blast hit/Others’ represent unclassified sequences in both data sets. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3640538_d2.v1
title: Additional file 3: Table S3. of Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya

description: Total diversity Sequence Read Archive metadata sheet of the samples collected from the hot springs of L. Magadi and Little Magadi (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3640538_d4.v1
title: Additional file 4: Table S4. of Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya

description: Active diversity Sequence Read Archive metadata sheet of the samples collected from the hot springs of L. Magadi and Little Magadi. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3640538_d5.v1
title: Additional file 7: Table S7. of Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya

description: Active diversity relative abundance of microbial taxa at family level in various samples collected from the three hot springs (83.6, 81 and 45.1 °C) of L. Magadi and Little Magadi. ‘No blast hit/Others’ represent unclassified sequences in both data sets. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3640538_d6.v1
title: Additional file 2: Table S2. of Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya

description: Active diversity environmental data sheet of the samples collected from the hot springs of L. Magadi and Little Magadi (XLS 24 kb)
DOI: 10.6084/m9.figshare.c.3640538_d7.v1
title: Additional file 6: Table S6. of Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya

description: Total diversity relative abundance of microbial taxa at family level in various samples collected from the three hot springs (83.6, 81 and 45.1 °C) of L. Magadi and Little Magadi. ‘No blast hit/Others’ represent unclassified sequences in both data sets. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3640538_d9.v1
title: Additional file 1: Table S1. of Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya

description: Total diversity environmental data sheet of the samples collected from the hot springs of L. Magadi and Little Magadi (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3640541_d2.v1
title: Additional file 6: of Impact of flanking chromosomal sequences on localization and silencing by the human non-coding RNA XIST

description: Table of primers. (XLSX 16 kb)
DOI: 10.34943/b34134c0-517b-4d1f-bedb-62a3c141c82c
title: ODP 1027C Hydrophone Deployed 2020-10-01

description: The Ocean Sonics icListen HF Hydrophone 6018 was deployed on 2020-10-01 at ODP 1027C. ODP 1027C is a borehole site used to pinpoint an area within Cascadia Basin. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.c.3640571_d1.v1
title: Additional file 2 of Parameterizing sequence alignment with an explicit evolutionary model

description: Tarball that contains the source code for the programs introduced in this manuscript, as well as the Perl scripts used to generate the experiments in this work and the results of the experiments. (ZIP 42,496 kb)
DOI: 10.6084/m9.figshare.c.3640580_d1.v1
title: Additional file 1: of The cervix as a natural tamponade in postpartum hemorrhage caused by placenta previa and placenta previa accreta: a prospective study

description: Cervical Inversion_placenta accreta. This is a movie file showing detailed steps of the technique of cervical inversion. (XML 7 kb)
DOI: 10.6084/m9.figshare.c.3640583_d4.v1
title: Additional file 13: Table S7. of New genes drive the evolution of gene interaction networks in the human and mouse genomes

description: Gene age datasets used in this study. (XLS 5395 kb)
DOI: 10.5519/qd.aqdeq6d9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8 records)
DOI: 10.6084/m9.figshare.c.3640595_d1.v1
title: Additional file 12: Table S10. of Genome sequence of Phormia regina Meigen (Diptera: Calliphoridae): implications for medical, veterinary and forensic research

description: BLASTn results of the putative sex chromosome contigs (chromosome X and Y) queried against the arthropoda database in GenBank. (XLSX 729Â kb)
DOI: 10.6084/m9.figshare.c.3640604_d7.v1
title: Additional file 10: Table S3. of Identification of the genes involved in odorant reception and detection in the palm weevil Rhynchophorus ferrugineus, an important quarantine pest, by antennal transcriptome analysis

description: GenBank accession numbers of the GR and OR proteins used for the tree construction (Figures 9 and 5). (XLSX 25Â kb)
DOI: 10.34943/ec330092-2e26-4f30-bc7e-25ea65088547
title: ODP 1027C Hydrophone Deployed 2020-10-01

description: The Ocean Sonics icListen HF Hydrophone 6020 was deployed on 2020-10-01 at ODP 1027C. ODP 1027C is a borehole site used to pinpoint an area within Cascadia Basin. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.7023242
title: MOCAS: A Multimodal Dataset for Objective Cognitive Workload Assessment on Simultaneous Tasks

description: This MOCAS is a multimodal dataset dedicated for human cognitive workload (CWL) assessment. In contrast to existing datasets based on virtual game stimuli, the data in MOCAS was collected from realistic closed-circuit television (CCTV) monitoring tasks, increasing its applicability for real-world scenarios. To build MOCAS, two off-the-shelf wearable sensors and one webcam were utilized to collect physiological signals and behavioral features from 21 human subjects. After each task, participants reported their CWL by completing the NASA-Task Load Index (NASA-TLX) and Instantaneous Self Assessment (ISA). Personal background (e.g., personality and prior experience) was surveyed using demographic and Big Five Factor personality questionnaires, and two domains of subjective emotion information (i.e., arousal and valence) were obtained from the Self-Assessment Manikin, which could serve as potential indicators for improving CWL recognition performance. Technical validation was conducted to demonstrate that target CWL levels were elicited during simultaneous CCTV monitoring tasks; its results support the high quality of the collected multimodal signals.
description: This material is based upon work supported by the National Science Foundation under Grant No. IIS-1846221. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.15468/dl.q5nx2v
title: Occurrence Download

description: A dataset containing 461658 species occurrences available in GBIF matching the query:
{
 "CollectionKey" : [
 "is fc904fab-a33c-4ca8-bd23-698ddb026f26"
 ]
}

 The dataset includes 461658 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037967-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640727_d5.v1
title: MOESM2 of 
                     Aspergillus nidulans protein kinase A plays an important role in cellulase production

description: Additional file 2: Table S2. MIPS FunCat 8 h.
DOI: 10.6084/m9.figshare.c.3640727_d4.v1
title: MOESM3 of 
                     Aspergillus nidulans protein kinase A plays an important role in cellulase production

description: Additional file 3: Table S3. MIPS FunCat 24 h.
DOI: 10.6084/m9.figshare.c.3640751_d1.v1
title: Additional file 1: of Network analysis reveals stage-specific changes in zebrafish embryo development using time course whole transcriptome profiling and prior biological knowledge

description: A list of altered genes identified along with the days on which they were differentially expressed. (XLS 1332 kb)
DOI: 10.6084/m9.figshare.c.3640763_d1.v1
title: Additional file 3: Table S2. of The psoriasis-associated deletion of late cornified envelope genes LCE3B and LCE3C has been maintained under balancing selection since Human Denisovan divergence

description: rs6693105 (ie, linked with L CE3BC deletion) a llele frequency in ancient human samples. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3640763_d2.v1
title: Additional file 4: Table S3. of The psoriasis-associated deletion of late cornified envelope genes LCE3B and LCE3C has been maintained under balancing selection since Human Denisovan divergence

description: Tajimaâ  s D, Pi, Fst, Î iHH for Neutral, ancient and Target regions. (XLSX 7546 kb)
DOI: 10.6084/m9.figshare.c.3640763_d3.v1
title: Additional file 5: of The psoriasis-associated deletion of late cornified envelope genes LCE3B and LCE3C has been maintained under balancing selection since Human Denisovan divergence

description: File S1. Codes. (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3640763_d4.v1
title: Additional file 2: Table S1. of The psoriasis-associated deletion of late cornified envelope genes LCE3B and LCE3C has been maintained under balancing selection since Human Denisovan divergence

description: Linkage disequilibrium between LCE3 BC deletion and adjacent SNPs. (XLSX 64 kb)
DOI: 10.15468/dl.2yrruc
title: Occurrence Download

description: A dataset containing 139730 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Atlantic Reference Centre Museum of Canadian Atlantic Organisms - Invertebrates and Fishes Data"
 ]
}

 The dataset includes 139730 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037970-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640763_d6.v1
title: Additional file 6: of The psoriasis-associated deletion of late cornified envelope genes LCE3B and LCE3C has been maintained under balancing selection since Human Denisovan divergence

description: FIle S2. Input file for generating the World Map. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3640766_d1.v1
title: MOESM3 of Baseline susceptibility of different European lepidopteran and coleopteran pests to Bt proteins expressed in Bt maize: a systematic review

description: Additional file 3: Table S3. Articles without duplicates.
DOI: 10.6084/m9.figshare.c.3640766_d2.v1
title: MOESM4 of Baseline susceptibility of different European lepidopteran and coleopteran pests to Bt proteins expressed in Bt maize: a systematic review

description: Additional file 4: Table S4. Articles after title screening.
DOI: 10.6084/m9.figshare.c.3640766_d3.v1
title: MOESM1 of Baseline susceptibility of different European lepidopteran and coleopteran pests to Bt proteins expressed in Bt maize: a systematic review

description: Additional file 1: Table S1. Categories of data extraction.
DOI: 10.6084/m9.figshare.c.3640766_d5.v1
title: MOESM5 of Baseline susceptibility of different European lepidopteran and coleopteran pests to Bt proteins expressed in Bt maize: a systematic review

description: Additional file 5: Table S5. Articles after abstract screening.
DOI: 10.6084/m9.figshare.c.3640805_d6.v1
title: Additional file 8: Table S1. of Coordinated inhibition of C/EBP by Tribbles in multiple tissues is essential for Caenorhabditis elegans development

description: List of CEBP-1 target genes and hierarchical clustering of genes and functional classes (XLSX 64Â kb)
DOI: 10.6084/m9.figshare.c.3640805_d9.v1
title: Additional file 11: Table S2. of Coordinated inhibition of C/EBP by Tribbles in multiple tissues is essential for Caenorhabditis elegans development

description: List of strains and alleles. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3640805_d10.v1
title: Additional file 12: Table S3. of Coordinated inhibition of C/EBP by Tribbles in multiple tissues is essential for Caenorhabditis elegans development

description: List of plasmids and primers used for qRT-PCR. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3640811_d4.v1
title: Additional file 7: Table S2. of Molecular analysis of the Sydney rock oyster (Saccostrea glomerata) CO2 stress response

description: S. glomerata DE transcripts. List of 1626 DE transcripts determined with Bowtie-RSEM-EBSeq, using a FDR threshold of 0.05. Sequence descriptions are based on blast homology searches against the NCBI nr database (e-value cut-off: 10-5, hit number threshold: 25), and on InterProScan domain/family information. Posterior fold change (FC) was based on the normalised data, whereas real FC was based on the raw data. C1 stands for control, C2 for treatment condition. (XLSX 124 kb)
DOI: 10.6084/m9.figshare.c.3640817_d1.v1
title: MOESM3 of Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

description: Additional file 3. Results of genotype accuracy analyses. Genotype accuracy analyses were performed by comparing sequence-derived genotypes and those obtained using the high-density SNP bead chip for 152 samples (39 Holstein, 49 Montbéliarde, 41 Normande and 23 Blonde d’Aquitaine).
DOI: 10.6084/m9.figshare.c.3640817_d2.v1
title: MOESM4 of Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

description: Additional file 4. List of LoF and deleterious missense variants for which no homozygous individual for the alternative allele was observed in our samples. For each variant, overall and per breed genotype (0/0, 0/1 and 1/1) distribution as well as the frequency for the alternative allele are indicated. The functional annotation results and SIFT predictions are also indicated.
DOI: 10.6084/m9.figshare.c.3640817_d3.v1
title: MOESM5 of Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

description: Additional file 5. GO enrichment analysis using the Cytoscape ClueGO plugin. The results of GO enrichment analyses were obtained using the overall list of LoF and deleterious missense variants for which no homozygous individual for the alternative allele was observed in our samples. The results for biological processes (BP), cellular components (CP) and molecular functions (MF) are in sheets 1, 2 and 3, respectively.
DOI: 10.6084/m9.figshare.c.3640817_d4.v1
title: MOESM1 of Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

description: Additional file 1. Summary of sequence coverage and sequence alignment to the reference genome. Total and mapped reads, as well as total and percent of correctly mapped reads are indicated for each sample. The estimated sequence coverage was also obtained for each sample.
DOI: 10.6084/m9.figshare.c.3640817_d5.v1
title: MOESM6 of Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

description: Additional file 6. Frequency of the alternative allele of SNPs in our validation panel. (Sheet 1) Frequency of the alternative allele was calculated using the genotyping data obtained by genotyping all variants of our validation panel with the custom Illumina Bovine low-density BeadChip. Monomorphic variants (homozygous for the reference allele) in each breed are indicated by “0“. Missing genotyping data are indicated by “ng”. The numbers of observed types of genotype are in column 3 and coded as follows: (1) monomorphic variants; (2) and (3) correspond to the 276 polymorphic variants with (2) corresponding to the 51 variants for which no homozygous individual for the alternative allele was observed and (3) corresponding to variants for which we observed the three genotypes. (Sheet 2) Results of the exact binomial distribution test with event probability being set to zero (which corresponds to the number of observed homozygous individuals for the alternative allele), and n  was equal to the  number of animals in each breed (indicated between parenthesis). For the Simmental breed, we had only two genotyped animals and therefore we did not do the binomial distribution test.
DOI: 10.6084/m9.figshare.c.3640862_d2.v1
title: Additional file 5: Table S4. of Serological diagnosis of pulmonary Mycobacterium tuberculosis infection by LIPS using a multiple antigen mixture

description: Raw LIPS data from the seven antigen mixture test with cohorts 2 and 3. (XLS 15Â kb)
DOI: 10.6084/m9.figshare.c.3640862_d5.v1
title: Additional file 3: Table S2. of Serological diagnosis of pulmonary Mycobacterium tuberculosis infection by LIPS using a multiple antigen mixture

description: Raw LIPS data (LU) from separate tests for 8 MTB antigens with cohort 2. (XLS 18Â kb)