cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3904561_d1.v1
title: MOESM1 of Integrated genomic characterization of cancer genes in glioma

description: Additional file 1: Figure S1. Driver genes in IDH1-mutated, non-IDH1-mutated and total glioma groups. A. The overlap of driver genes predicted by OncodriveCLUST in the three groups; B. The overlap of driver genes predicted by OncodriveFM in the three groups; C. The overlap of driver genes predicted by Icages in the three groups; D. The overlap of driver genes predicted by Drgap in the three groups; E. The overlap of driver genes predicted by Dendrix in the three groups; F. The overlap of driver pathways predicted by Dendrix in the three groups. Figure S2. Expression profiling of 428 driver genes between glioma and normal brain samples, expression values of each gene was presented as log(FPKM + 0.001). Figure S3. The protein–protein interaction network of driver genes. Network nodes represent proteins, network edges represent protein–protein associations. Notably, disconnected nodes were disabled in the network. Colored nodes refer to query proteins and first shell of interactors, white nodes are second shell of interactors. Blue lines represent known interactions from curated Kyoto Encyclopedia of Genes and Genomes database. Pink lines represent experimentally determined protein–protein interactions. Green lines denote genes that are frequently observed in each other’s genomic neighborhood. Black lines stand for genes whose expression is correlated across a large number of experiments. Dark blue gene families show similar occurrence patterns across genomes, light blue proteins show amino acid sequence similarity. Figure S4. The frequencies of copy number variations in 52 glioma samples.
DOI: 10.6084/m9.figshare.c.3904507_d22.v1
title: Additional file 9: of miRNAs involved in the development and differentiation of fertile and sterile flowers in Viburnum macrocephalum f. keteleeri

description: Novel miRNA*s in Viburnum macrocephalum f. keteleeri flowers, including expression levels in VMF and VMS. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.c.3904507_d22
title: Additional file 9: of miRNAs involved in the development and differentiation of fertile and sterile flowers in Viburnum macrocephalum f. keteleeri

description: Novel miRNA*s in Viburnum macrocephalum f. keteleeri flowers, including expression levels in VMF and VMS. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.c.3904507_d20
title: Additional file 7: of miRNAs involved in the development and differentiation of fertile and sterile flowers in Viburnum macrocephalum f. keteleeri

description: Known miRNAs in Viburnum macrocephalum f. keteleeri flowers, including family members, mature sequence, length, and expression levels in fertile (VMF) and sterile (VMS) flowers. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3903661_d7
title: Additional file 3: Table S1. of Chromatin states responsible for the regulation of differentially expressed genes under 60Co~Îł ray radiation in rice

description: Summary of DEGs post-IR treatment. (XLS 1086 kb)
DOI: 10.6084/m9.figshare.c.3903694_d11.v1
title: Additional file 2: Table S1. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

description: The four significantly clustered profiles and the corresponding genes across four developmental stages in Laiwu pigs. A total of 10 profiles were generated and only four profiles significantly clustered across 60, 120, 240 and 400Â days old in Laiwu pigs. (XLSX 76Â kb)
DOI: 10.6084/m9.figshare.c.3903694_d11
title: Additional file 2: Table S1. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

description: The four significantly clustered profiles and the corresponding genes across four developmental stages in Laiwu pigs. A total of 10 profiles were generated and only four profiles significantly clustered across 60, 120, 240 and 400Â days old in Laiwu pigs. (XLSX 76Â kb)
DOI: 10.6084/m9.figshare.c.3903694_d8
title: Additional file 17: Table S11. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

description: Description of DEGs with DMRs, DEGs without DMRs and DMRs without DEGs in 120 d vs 240 d Laiwu pigs. (XLSX 1094Â kb)
DOI: 10.6084/m9.figshare.c.3903694_d8.v1
title: Additional file 17: Table S11. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

description: Description of DEGs with DMRs, DEGs without DMRs and DMRs without DEGs in 120 d vs 240 d Laiwu pigs. (XLSX 1094Â kb)
DOI: 10.6084/m9.figshare.c.3903694_d5
title: Additional file 14: Table S10. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

description: The classification of transcriptome according to their FPKM value at 120 d and 240 d of Laiwu pigs. (XLSX 2057Â kb)
DOI: 10.6084/m9.figshare.c.3903694_d5.v1
title: Additional file 14: Table S10. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

description: The classification of transcriptome according to their FPKM value at 120 d and 240 d of Laiwu pigs. (XLSX 2057Â kb)
DOI: 10.6084/m9.figshare.c.3903694_d4
title: Additional file 13: Table S9. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

description: The differentially methylated regions (DMRs) in 120 and 240 days old Laiwu pigs. The DMRs were generated by sequencing depth ≥ 10×, at least 3 DMCs, meanwhile the minimum value ≥ 0.3, and p
DOI: 10.6084/m9.figshare.c.3903694_d4.v1
title: Additional file 13: Table S9. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

description: The differentially methylated regions (DMRs) in 120 and 240 days old Laiwu pigs. The DMRs were generated by sequencing depth ≥ 10×, at least 3 DMCs, meanwhile the minimum value ≥ 0.3, and p
DOI: 10.6084/m9.figshare.c.3903694_d3.v1
title: Additional file 12: Table S8. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

description: The differentially methylated cytosines (DMCs) and corresponding genes in 120 and 240 days old Laiwu pigs. The DMCs were produced by sequencing depth ≥ 4×, and FDR ≤ 0.05. (XLSX 6864 kb)
DOI: 10.6084/m9.figshare.c.3903694_d3
title: Additional file 12: Table S8. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

description: The differentially methylated cytosines (DMCs) and corresponding genes in 120 and 240 days old Laiwu pigs. The DMCs were produced by sequencing depth ≥ 4×, and FDR ≤ 0.05. (XLSX 6864 kb)
DOI: 10.15468/dl.tcyxe2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sebastes macrochir Günther, 1877",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035731-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3902521_d11.v1
title: Additional file 6: Table S3. of Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana

description: GO enrichment comparison for SR45-downregulated genes among three different pipelines. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3902521_d11
title: Additional file 6: Table S3. of Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana

description: GO enrichment comparison for SR45-downregulated genes among three different pipelines. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3902497_d14
title: Additional file 9: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

description: Differentially expressed miRNAs between anagen and telogen. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3902497_d14.v1
title: Additional file 9: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

description: Differentially expressed miRNAs between anagen and telogen. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3902521_d10.v1
title: Additional file 5: Table S2. of Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana

description: Summary lists of SR45 differentially regulated (SDR) genes identified by three different pipelines. (XLSX 891Â kb)
DOI: 10.6084/m9.figshare.c.3902521_d10
title: Additional file 5: Table S2. of Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana

description: Summary lists of SR45 differentially regulated (SDR) genes identified by three different pipelines. (XLSX 891Â kb)
DOI: 10.6084/m9.figshare.c.3902497_d13
title: Additional file 8: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

description: Differentially expressed KRTS and KAPs. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3902497_d13.v1
title: Additional file 8: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

description: Differentially expressed KRTS and KAPs. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3902521_d8.v1
title: Additional file 3: Table S1. of Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana

description: A summary of assembly results. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3902521_d8
title: Additional file 3: Table S1. of Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana

description: A summary of assembly results. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3902497_d12
title: Additional file 7: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

description: Differentially expressed lncRNA between anagen and telogen. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3902497_d12.v1
title: Additional file 7: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

description: Differentially expressed lncRNA between anagen and telogen. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3902497_d11.v1
title: Additional file 6: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

description: Differentially expressed genes between anagen and telogen. (XLSX 229Â kb)
DOI: 10.6084/m9.figshare.c.3902521_d5.v1
title: Additional file 14: Table S7. of Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana

description: A summary of all primers used in this study. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3902497_d11
title: Additional file 6: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

description: Differentially expressed genes between anagen and telogen. (XLSX 229Â kb)
DOI: 10.6084/m9.figshare.c.3902497_d10.v1
title: Additional file 5: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

description: Novel mature miRNA sequence and precursor sequence. (TXT 14Â kb)
DOI: 10.6084/m9.figshare.c.3902521_d5
title: Additional file 14: Table S7. of Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana

description: A summary of all primers used in this study. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3902497_d10
title: Additional file 5: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

description: Novel mature miRNA sequence and precursor sequence. (TXT 14Â kb)
DOI: 10.6084/m9.figshare.c.3902476_d2
title: Additional file 1: of Dehydration induced transcriptomic responses in two Tibetan hulless barley (Hordeum vulgare var. nudum) accessions distinguished by drought tolerance

description: Primers sequences and their product size in qRT-PCR. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3901501_d2.v1
title: Additional file 2: of Protein remote homology detection based on bidirectional long short-term memory

description: The source code and its document of ProDec-BLSTM. (ZIP 316Â kb)
DOI: 10.6084/m9.figshare.c.3901501_d2
title: Additional file 2: of Protein remote homology detection based on bidirectional long short-term memory

description: The source code and its document of ProDec-BLSTM. (ZIP 316Â kb)
DOI: 10.6084/m9.figshare.c.3901447_d4.v1
title: Additional file 4: Table S3. of Sequencing of the complete mitochondrial genome of a fish-parasitic flatworm Paratetraonchoides inermis (Platyhelminthes: Monogenea): tRNA gene arrangement reshuffling and implications for phylogeny

description: Pairwise comparison of 21 unique mitochondrial DNA gene orders among 107 neodermatan species. The analysis is based on the order of all 36 genes: 12 protein-coding, two rRNA and 22 tRNA genes. Taxa with identical gene order were removed and representative randomly chosen. Scores indicate the similarity between gene orders: the higher the score, the more similar the gene order, where “1254” represents an identical gene order. (XLSX 13 kb)
DOI: 10.15468/dl.947e7r
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthopagrus latus (Houttuyn, 1782)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 153 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035732-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3898288_d1.v1
title: Additional file 1: of Spectrum of PAH gene variants among a population of Han Chinese patients with phenylketonuria from northern China

description: Genotype-phenotype correlations in patients with phenylketonuria. This file contains a description of the basic information, pretreatment plasma Phe level, clinical phenotype, and the corresponding genotypes for each patient. (XLS 106Â kb)
DOI: 10.6084/m9.figshare.c.3898288_d1
title: Additional file 1: of Spectrum of PAH gene variants among a population of Han Chinese patients with phenylketonuria from northern China

description: Genotype-phenotype correlations in patients with phenylketonuria. This file contains a description of the basic information, pretreatment plasma Phe level, clinical phenotype, and the corresponding genotypes for each patient. (XLS 106Â kb)
DOI: 10.15468/dl.3z22hc
title: Occurrence Download

description: A dataset containing 734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Australian Museum provider for OZCAM, Australian National Insect Collection, NSW DPI Biosecurity Collections, Museums Victoria provider for OZCAM, Queensland Museum provider for OZCAM, Museum of Texas Tech University Invertebrate Zoology Collection, NatureMapr, Queen Victoria Museum Art Gallery provider for OZCAM, Earth Guardians Weekly Feed)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anoplognathus viriditarsis (Leach, 1815)"
 ]
}

 The dataset includes 734 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035733-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3896029_d1.v1
title: Additional file 1: Table S1. of Circular RNA expression profiles and features in human tissues: a study using RNA-seq data

description: RNA-seq data information; Table S2. Characteristics of known circRNAs identified in human adult tissues; Table S3. Characteristics of novel circRNAs identified in human adult tissues; Table S4. Characteristics of 33 candidate circRNAs identified in human adult tissues; Table S5. Characteristics of 33 circRNAs parental gene expression in human adult tissues; Table S6. Characteristics of circRNAs identified in human fetal tissues; Table S7. Characteristics of circRNAs identified in human gland tissues; Table S8. Gene Ontology analysis of biological processes in circRNAs of only in fetal tissues. (XLSX 3123 kb)
DOI: 10.6084/m9.figshare.c.3896029_d1
title: Additional file 1: Table S1. of Circular RNA expression profiles and features in human tissues: a study using RNA-seq data

description: RNA-seq data information; Table S2. Characteristics of known circRNAs identified in human adult tissues; Table S3. Characteristics of novel circRNAs identified in human adult tissues; Table S4. Characteristics of 33 candidate circRNAs identified in human adult tissues; Table S5. Characteristics of 33 circRNAs parental gene expression in human adult tissues; Table S6. Characteristics of circRNAs identified in human fetal tissues; Table S7. Characteristics of circRNAs identified in human gland tissues; Table S8. Gene Ontology analysis of biological processes in circRNAs of only in fetal tissues. (XLSX 3123 kb)
DOI: 10.15468/dl.3dstg2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthopagrus sheim Iwatsuki, 2013",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035734-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3895897_d4
title: MOESM4 of Metabolic network model guided engineering ethylmalonyl-CoA pathway to improve ascomycin production in Streptomyces hygroscopicus var. ascomyceticus

description: Additional file 4. The updated model including the complete ethylmalonyl-CoA pathway, and the potential targets identified using this model.
DOI: 10.6084/m9.figshare.c.3895897_d4.v1
title: MOESM4 of Metabolic network model guided engineering ethylmalonyl-CoA pathway to improve ascomycin production in Streptomyces hygroscopicus var. ascomyceticus

description: Additional file 4. The updated model including the complete ethylmalonyl-CoA pathway, and the potential targets identified using this model.
DOI: 10.6084/m9.figshare.c.3895897_d2.v1
title: MOESM2 of Metabolic network model guided engineering ethylmalonyl-CoA pathway to improve ascomycin production in Streptomyces hygroscopicus var. ascomyceticus

description: Additional file 2. Metabolic network model of S. hygroscopicus var. ascomyceticus FS35 and potential targets identified using this model.
DOI: 10.6084/m9.figshare.c.3895861_d5.v1
title: Additional file 5: Table S4. of Unique protein expression signatures of survival time in kidney renal clear cell carcinoma through a pan-cancer screening

description: Screening results for stage-specific mRNA biomarkers prognostic for KIRC (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3895861_d5
title: Additional file 5: Table S4. of Unique protein expression signatures of survival time in kidney renal clear cell carcinoma through a pan-cancer screening

description: Screening results for stage-specific mRNA biomarkers prognostic for KIRC (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3895897_d2
title: MOESM2 of Metabolic network model guided engineering ethylmalonyl-CoA pathway to improve ascomycin production in Streptomyces hygroscopicus var. ascomyceticus

description: Additional file 2. Metabolic network model of S. hygroscopicus var. ascomyceticus FS35 and potential targets identified using this model.
DOI: 10.6084/m9.figshare.c.3895897_d1
title: MOESM1 of Metabolic network model guided engineering ethylmalonyl-CoA pathway to improve ascomycin production in Streptomyces hygroscopicus var. ascomyceticus

description: Additional file 1. Conservation analysis of the proteins in the model iMK1208 against 31 Streptomyces strains.
DOI: 10.6084/m9.figshare.c.3895897_d1.v1
title: MOESM1 of Metabolic network model guided engineering ethylmalonyl-CoA pathway to improve ascomycin production in Streptomyces hygroscopicus var. ascomyceticus

description: Additional file 1. Conservation analysis of the proteins in the model iMK1208 against 31 Streptomyces strains.
DOI: 10.6084/m9.figshare.c.3895861_d4.v1
title: Additional file 4: Table S3. of Unique protein expression signatures of survival time in kidney renal clear cell carcinoma through a pan-cancer screening

description: Screening results for stage-specific RPPA protein biomarkers prognostic for KIRC (XLSX 61 kb)
DOI: 10.5281/zenodo.14498839
title: Association  between CYP genes  polymorphisms and  the risk of type 2 diabetes
DOI: 10.5281/zenodo.14498840
title: Association  between CYP genes  polymorphisms and  the risk of type 2 diabetes
DOI: 10.15468/dl.fqs5gq
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthopagrus morrisoni Iwatsuki, 2013",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035735-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3894727_d10
title: Additional file 4 of MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics

description: Table S4. The detailed analysis results of Acid Mine Drainage metaproteomic samples. (XLS 132 kb)
DOI: 10.6084/m9.figshare.c.3894727_d9
title: Additional file 3 of MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics

description: Table S3. The input functional gene APM data of Acid Mine Drainage metaproteomic samples. (XLS 83kb)
DOI: 10.6084/m9.figshare.c.3894727_d8
title: Additional file 2 of MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics

description: Table S2. The detailed analysis results of eight typical environmental metagenomic samples. (XLS 2109 kb)
DOI: 10.6084/m9.figshare.c.3894736_d2.v1
title: Additional file 2: Table S1. of O-5S quantitative real-time PCR: a new diagnostic tool for laboratory confirmation of human onchocerciasis

description: Additional file 2: Table S1. Socio-demographic, clinical and diagnostic data of the study subjects. (XLSX 224Â kb)
DOI: 10.6084/m9.figshare.c.3894736_d2
title: Additional file 2: Table S1. of O-5S quantitative real-time PCR: a new diagnostic tool for laboratory confirmation of human onchocerciasis

description: Additional file 2: Table S1. Socio-demographic, clinical and diagnostic data of the study subjects. (XLSX 224Â kb)
DOI: 10.6084/m9.figshare.c.3894727_d7.v1
title: Additional file 1 of MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics

description: Table S1. The input functional gene APM data of eight typical environmental metagenomic samples. (TXT 291 kb)