cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5905415
title: Dataset for: Multi-scale approach to biodiversity proxies of biological control service in European farmlands

description: Dataset for the BiodivERsA COFUND Woodned project. Information on which spatio-temporal factors are simultaneously affecting crop pests and their natural enemies is required to improve conservation biological control practices. The study was conducted in 80 winter wheat crop fields distributed in three regions of North-western Europe (Brittany, Hauts-de-France and Wallonia), along intra-regional gradients of landscape complexity. Five taxa : aphids, slugs, spiders, carabids, and parasitoids were sampled for two consecutive years. We analysed the influence of regional, landscape and local factors on the abundance and species richness of crop-dwelling organisms, as proxies of the service/disservice they provide. Firstly, there was higher biocontrol potential in areas with mild winter climatic conditions. Secondly, natural enemy communities were less diverse and had lower abundances in landscapes with high crop and wooded continuities, contrary to slugs and aphids. Finally, field boundaries with grass strips were more favourable to spiders and carabids than boundaries formed by hedges, while the opposite was found for crop pests, with the latter being less abundant towards the centre of the fields. These results are quite unexpected because they show that hedgerows and woodlots should not be the unique cornerstones of agro-ecological landscape design strategies. We point out that combining woody and grassy habitats to take full advantage of the features and ecosystem services they both provide may promote sustainable agricultural ecosystems. It may be possible to both reduce pest pressure and promote natural enemies by accounting for taxa-specific antagonistic responses to multi-scale environmental characteristics.
DOI: 10.5281/zenodo.5905953
title: SODM within Online Surveys

description: This project contains the scripts and data for the paper "Sequential On-Device Multitasking within Online Surveys" published in Sociological Methods and Research under the following DOI: XY
DOI: 10.5281/zenodo.5905952
title: SODM within Online Surveys

description: This project contains the scripts and data for the paper "Sequential On-Device Multitasking within Online Surveys" published in Sociological Methods and Research under the following DOI: XY
DOI: 10.5281/zenodo.5906002
title: Filtered-CoPhy

description: FilteredCoPhy
description: {"references": ["Filtered CoPy: Unsupervised Learning of Counterfactual Physics in Pixel Space"]}
DOI: 10.5281/zenodo.5906001
title: Filtered-CoPhy

description: FilteredCoPhy
description: {"references": ["Filtered CoPy: Unsupervised Learning of Counterfactual Physics in Pixel Space"]}
DOI: 10.5286/isis.e.rb2210345
title: Measuring superexchange in a strongly interacting metal-organic framework magnet

description: Metal-organic framework magnets (MOFMs) are a promising class of magnets due to their tunability, but a historic challenge has been introducing strong enough superexchange interactions for practical applications. Recent work has shown that Cr(II) based magnets can have very strong magnetic interactions through either itinerancy or the generation of radical ligands. We have synthesised a new Cr MOFM without either metallicity or radical ligands with order of magnitude stronger magnetic superexchange than other analogues. In this experiment we will directly measure the superexchange interactions through powder inelastic neutron scattering, allowing us to suggest new avenues for generating strong through-organic-ligand superexchange. Additionally, we will uncover the origin of the significantly suppressed magnetic ordering in this material.
DOI: 10.5286/isis.e.rb2210345-1
title: Measuring superexchange in a strongly interacting metal-organic framework magnet

description: Metal-organic framework magnets (MOFMs) are a promising class of magnets due to their tunability, but a historic challenge has been introducing strong enough superexchange interactions for practical applications. Recent work has shown that Cr(II) based magnets can have very strong magnetic interactions through either itinerancy or the generation of radical ligands. We have synthesised a new Cr MOFM without either metallicity or radical ligands with order of magnitude stronger magnetic superexchange than other analogues. In this experiment we will directly measure the superexchange interactions through powder inelastic neutron scattering, allowing us to suggest new avenues for generating strong through-organic-ligand superexchange. Additionally, we will uncover the origin of the significantly suppressed magnetic ordering in this material.
DOI: 10.5286/isis.e.rb2010629
title: How is the nanoscale structure of Amorphous Solid Water (ASW) impacted by the presence of adsorbates?

description: This experiment will determine how the structure and porosity of Amorphous Solid Water (ASW) changes when the ice is contaminated by adsorbate molecules. ASW is a porous material formed by vapour-depositing water onto a cold plate, an analogue of the ice found in star- and planet-forming regions of our galaxy. Our previous work has shown that the ASW has very small-scale porosity, but NIMROD data of the pure water ice alone are unable to elucidate pore accessibility; open pores can trap volatile molecules well beyond their desorption temperature and therefore act as a reservoir for coolant molecules in star-forming regions. This experiment tests ASW porosity evolution as a function of ice-adsorbate morphology and measures ASW structural changes as the ice is grown and heated, exploiting the broad Q-range of NIMROD to probe the molecular level and meso-scale of the ice concurrently.
DOI: 10.5286/isis.e.rb2010629-1
title: How is the nanoscale structure of Amorphous Solid Water (ASW) impacted by the presence of adsorbates?

description: This experiment will determine how the structure and porosity of Amorphous Solid Water (ASW) changes when the ice is contaminated by adsorbate molecules. ASW is a porous material formed by vapour-depositing water onto a cold plate, an analogue of the ice found in star- and planet-forming regions of our galaxy. Our previous work has shown that the ASW has very small-scale porosity, but NIMROD data of the pure water ice alone are unable to elucidate pore accessibility; open pores can trap volatile molecules well beyond their desorption temperature and therefore act as a reservoir for coolant molecules in star-forming regions. This experiment tests ASW porosity evolution as a function of ice-adsorbate morphology and measures ASW structural changes as the ice is grown and heated, exploiting the broad Q-range of NIMROD to probe the molecular level and meso-scale of the ice concurrently.
DOI: 10.5258/soton/d2047
title: Negotiating Intergenerational Support: The Effects of Socio-Demographic Changes and Economic Development in Kampong Ayer

description: Dataset is for University of Southampton Doctoral Thesis "Negotiating Intergenerational Support: The Effects of Socio-Demographic Changes and Economic Development in Kampong Ayer". Interview transcripts from interviews with villagers in Kampong Ayer in the country of Brunei Darussalamin, conducted between October 2017 to March 2018. Transcripts are in the Malay language and were derived from recorded interviews.
DOI: 10.6084/m9.figshare.19070474
title: Quasi-periodic whistler mode emission in the plasmasphere as observed by the DSX spacecraft by Farrell et al. 2021

description: The data files supporting each of the figures in the above-cited paper are listed herein and included as separate files in the supporting information submission.
DOI: 10.5281/zenodo.5564692
title: Labeled points for four land cover classes referring to the year 2019

description: This dataset provides hand-labeled points for four different land cover classes in coastal areas (sand, seawater, grass, trees). It was created based on photointerpretation of high-resolution imagery in Google Earth Pro and QGIS, referring to the year 2019. This dataset was used for the random forest classification of satellite imagery in the following manuscript: "<em>Satellite image processing for the coarse-scale investigation of sandy coastal areas</em>". If you use any part of this dataset, please cite as follows:
DOI: 10.5281/zenodo.5564691
title: Labeled points for four land cover classes referring to the year 2019

description: This dataset provides hand-labeled points for four different land cover classes in coastal areas (sand, seawater, grass, trees). It was created based on photointerpretation of high-resolution imagery in Google Earth Pro and QGIS, referring to the year 2019. This dataset was used for the random forest classification of satellite imagery in the following manuscript: "<em>Satellite image processing for the coarse-scale investigation of sandy coastal areas</em>". If you use any part of this dataset, please cite as follows:
DOI: 10.5522/04/18692549
title: Dataset for manuscript: Women’s preferences for receiving uncertain results from prenatal genomic testing: An international discrete choice experiment

description: We conducted a survey containing a discrete choice experiment to understand the test features that drive women's preferences for prenatal genomic testing, and explore variation across countries. This file is an excel dataset of the complete results from the survey (excluding sensitive data around ethnicity and religion).
DOI: 10.5522/04/18692549.v1
title: Dataset for manuscript: Women’s preferences for receiving uncertain results from prenatal genomic testing: An international discrete choice experiment

description: We conducted a survey containing a discrete choice experiment to understand the test features that drive women's preferences for prenatal genomic testing, and explore variation across countries. This file is an excel dataset of the complete results from the survey (excluding sensitive data around ethnicity and religion).
DOI: 10.34740/kaggle/dsv/3096550
title: COVID Vaccination in World (updated daily)
DOI: 10.25403/upresearchdata.19029668
title: Analysing the relationship between remuneration and employee performance in the Department of Public Service

description: The data set is qualitative drawing from selected key informants in the Department of Public Service (DPSA). Analyses was about the relationship between remuneration and employee perofmance.<br>
DOI: 10.25403/upresearchdata.19029668.v1
title: Analysing the relationship between remuneration and employee performance in the Department of Public Service

description: The data set is qualitative drawing from selected key informants in the Department of Public Service (DPSA). Analyses was about the relationship between remuneration and employee perofmance.<br>
DOI: 10.6084/m9.figshare.19070825
title: Full plasmid sequences

description: Full plasmid sequences of all new plasmids described in paper
DOI: 10.6084/m9.figshare.19070825.v1
title: Full plasmid sequences

description: Full plasmid sequences of all new plasmids described in paper
DOI: 10.25573/data.13491633
title: Assessing genotyping errors in mammalian museum study skins using high-throughput genotyping-by-sequencing

description: Microsatellite output files from the CHIIMP pipeline
DOI: 10.25573/data.13491633.v1
title: Assessing genotyping errors in mammalian museum study skins using high-throughput genotyping-by-sequencing

description: Microsatellite output files from the CHIIMP pipeline
DOI: 10.6084/m9.figshare.19064738
title: Genome resequencing of D. simulans j3RM1 balancer backcrossed to D. mauritiana

description: Raw sequence data from backcrosses of j3RM1 balancer to D. mauritiana
DOI: 10.6084/m9.figshare.19064738.v1
title: In3RG1_4_1.fastq.gz

description: Raw sequence data from backcrosses of j3RM1 balancer to D. mauritiana
DOI: 10.5281/zenodo.5898146
title: Biogeomorphic modeling to assess resilience of tidal marsh restoration to sea level rise and sediment supply - Supporting code and data

description: Code and data to reproduce figures and analyses of the paper: Gourgue, O., van Belzen, J., Schwarz, C., Vandenbruwaene, W., Vanlede, J., Belliard, J.-P., Fagherazzi, S., Bouma, T.J., van de Koppel, J., and Temmerman, S.: Biogeomorphic modeling to assess resilience of tidal marsh restoration to sea level rise and sediment supply, Earth Surf. Dynam., submitted. Standard Python dependencies: GDAL Geopandas Matplotlib NumPy Rasterio SciPy Seaborn Shapely scikit-learn Third-party Python dependencies: Centerline (https://github.com/fitodic/centerline) pputils (https://github.com/pprodano/pputils) pysheds (https://github.com/mdbartos/pysheds) In-house Python dependencies: Demeter 1.0.5 (https://doi.org/10.5281/zenodo.5205258) OGTools 1.1 (https://doi.org/10.5281/zenodo.3994952) TidalGeoPro 0.1 (https://doi.org/10.5281/zenodo.5205285)
description: This project has received funding from the Vlaams-Nederlandse Scheldecommissie (VNSC), the European Union's Horizon 2020 research and innovation program (Marie Skłodowska-Curie Actions – global postdoctoral fellowship – grant nr. 798222) and the Research Foundation – Flanders (FWO – fundamental research project – grant nr. G060018N). The resources and services used in this work were provided by the VSC (Flemish Supercomputer Center), funded by the Research Foundation – Flanders (FWO) and the Flemish Government. SF was partly funded by the USA National Science Foundation awards 1637630 (PIE LTER) and 1832221 (VCR LTER).
DOI: 10.5281/zenodo.5874929
title: All data of the manuscript "A self-sustained charge neutrality lightning model containing the channel decay and reactivation process" submitted to Geophysical Research Letters

description: The data supports the manuscript entitled "A self-sustained charge neutrality lightning model containing the channel decay and reactivation process”. Microsoft Notepad can open the *.txt files, they contain the channel information of two intracloud flashes (IC1 and IC2) and the channel elctrical parameters at the first fork of positive or negative leader channels. A normal video player software can open Movies S1.avi, and it shows the entire development process of IC1 discharge. The data can be used freely for scientific purposes with the appropriate citation.
DOI: 10.5281/zenodo.5874928
title: All data of the manuscript "A self-sustained charge neutrality lightning model containing the channel decay and reactivation process" submitted to Geophysical Research Letters

description: The data supports the manuscript entitled "A self-sustained charge neutrality lightning model containing the channel decay and reactivation process”. Microsoft Notepad can open the *.txt files, they contain the channel information of two intracloud flashes (IC1 and IC2) and the channel elctrical parameters at the first fork of positive or negative leader channels. A normal video player software can open Movies S1.avi, and it shows the entire development process of IC1 discharge. The data can be used freely for scientific purposes with the appropriate citation.
DOI: 10.48370/ofd/aoa46e
title: Ascocoryne sarcoides (Jacq.) J.W.Groves D.E.Wilson, 1606

description: Fungarium Macromycetes
DOI: 10.6084/m9.figshare.14607519
title: Sex differences in immune gene expression in the brain of a small shorebird

description: Supplementary tables S3-S6 and gene counts of 403 immune genes from brain tissue in Kentish plover (before filtering out low counts, ≤5). <br>
DOI: 10.6084/m9.figshare.14607519.v1
title: Sex differences in immune gene expression in the brain of a small shorebird

description: Supplementary tables S3-S6 and gene counts of 403 immune genes from brain tissue in Kentish plover (before filtering out low counts, ≤5). <br>
DOI: 10.48370/ofd/csmbct
title: Asterodon ferruginosus Pat., 1547

description: Fungarium Macromycetes
DOI: 10.5281/zenodo.5906430
title: Surface Ocean Biogeochemistry Regulates the Impact of Anthropogenic Aerosol Fe Deposition on the Cycling of Iron and Iron Isotopes in the North Pacific

description: Monthly-average (year 2014) netcdf output files of NEMO/PISCES Fe isotope model experiments on the ORCA2 grid for experiments with updated iron deposition fields; "ptrc" files contain model outputs for heavy and light iron tracers, "diad" files contain diagnostic model outputs for iron uptake (of light and heavy iron), primary production (for diatoms and nanophytoplankton), and iron deposition fluxes (from dust, anthropogenic, and fire sources).
DOI: 10.5281/zenodo.5906429
title: Surface Ocean Biogeochemistry Regulates the Impact of Anthropogenic Aerosol Fe Deposition on the Cycling of Iron and Iron Isotopes in the North Pacific

description: Monthly-average (year 2014) netcdf output files of NEMO/PISCES Fe isotope model experiments on the ORCA2 grid for experiments with updated iron deposition fields; "ptrc" files contain model outputs for heavy and light iron tracers, "diad" files contain diagnostic model outputs for iron uptake (of light and heavy iron), primary production (for diatoms and nanophytoplankton), and iron deposition fluxes (from dust, anthropogenic, and fire sources).
DOI: 10.6084/m9.figshare.16802158.v5
title: Good Fences Make Good Neighbours? On the Impact of Cultural and Geographical Dispersion on Community Smells

description: Appendix and Replication Package of the paper titled <b>Good Fences Make Good Neighbours! On the Impact of Cultural and Geographical Dispersion on Community Smells</b>.
DOI: 10.6084/m9.figshare.14865561.v1
title: S1 - Genome metadata and metabolic analyses for existing and newly extracted Rickettsia and Megaira symbiotic bacteria

description: <b>What is it</b> An excel spread sheet containing all metadata associated with new and existing <i>Rickettsia</i>, Torix <i>Rickettsia</i>, <i>Ca</i>. Megaira and <i>Orientia</i> genomes used in pangenomic, metabolic and phylogenomic analyses in the paper "Genomic diversity in the genus Rickettsia and its sister groups indicate the torix group are evolutionarily distinct" The tables are split into genome data (S1a) and metabolic data (S1b). Each sheet contains the information as follows:<br> <b><i>S1a</i></b><i> – yellow tabs, genome and gene sequence metadata</i> - &gt; <b>S1a.1</b> – a list of published genomes. Includes accession numbers, which rickettsia group they belong to, checkM quality check scores, metadata on assembly level, and which analyses they were used in. -&gt; <b>S1a.2</b> – Metadata for new genomes assembles in this study. Includes: rickettsia group, assembly level, checkM completeness scores, genome size and N50 scores, Host names, host accessions and brief details of host ecology. -&gt; <b>S1a.3</b> – Accession and host species for all Rickettsial 16S rRNA, COI, gltA and 17kDa sequences used in MLST to identify the Rhyzobius (Oopac6), Meloidae (Ppec13), Moomin (Moomin) and unusual Belli (Dallo3) genomes extracted from Short Read Archive data.-&gt; <b>S1a.4 </b>– GTDB-Tk taxonomy classification which supports assiggning torix group rickettsia in its own clade.<br><br> <b><i>S1b</i></b><i> – red tabs, pangenome and metabolic data</i> -&gt; <b>S1b.1</b> – The 74 core gene clusters with COG and KEGG/kofam functions across 104 genomes from a pangenome of Rickettsia, Megaira and Orientia constructed with Anvi’o. PHI scores are given for each cluster. These gene clusters were later used in phylogeny construction. -&gt; <b>S1b.2</b> – The 43 ribosomal protein gene clusters with COG and KEGG/kofam functions across 104 genomes from a pangenome of Rickettsia, Megaira and Orientia constructed with Anvi’o 7. These gene clusters were later used in phylogeny construction. -&gt; <b>S1b.3</b> – Raw metabolic pathway completion scores for Rickettsia, Megaira and Orientia genomes used in metabolic heatmaps in the main paper. Contains the KEGG module names, classes, categories, and estimated completion scores produced through `anvi-estimate-metabolism` in Anvi’o 7. -&gt;<b> S1b.4</b> – Functional enrichment scores produced with `anvi-get-enriched-functions-per-pan-group` in Anvi’o 7. Comparisons are made within Torix, within the main Rickettsia (excluding Torix), between Torix and Megaira, and between Torix and Rickettsia.-&gt;<b> S1b.5</b> – Average nucleotide identity (ANI) scores with percentage similarity between each genome.<br><br> <b>Why is it</b> Background data that is necessary for transparency but is unsuitable for inclusion in a paper as information tables.<br> <b>Use and benefit</b> Useful metadata and raw data that can be examined by readers and allows for reproducibility.
DOI: 10.5281/zenodo.5906316
title: Sharkipedia: A Curated Open Access Database of Shark and Ray Life History Traits and Abundance Time-series

description: This dataset represent the intial launch of Sharkipedia: a curated open access database of shark and ray life history traits and abundance time-series. A curated database of shark and ray biological data is increasingly necessary both to support fisheries management and conservation efforts, and to test the generality of hypotheses of vertebrate macroecology and macroevolution. Sharks and rays are one of the most charismatic, evolutionary distinct, and threatened lineages of vertebrates, comprising around 1,250 species. To accelerate shark and ray conservation and science, we developed Sharkipedia as a curated open-source database and research initiative to make all published biological traits and population trends accessible to everyone. Sharkipedia hosts information on 58 life history traits from 264 sources, for 170 species, from 39 families, and 12 orders related to length (n=9 traits), age (8), growth (12), reproduction (19), demography (5), and allometric relationships (5), as well as 871 population time-series from 202 species. Sharkipedia relies on the backbone taxonomy of the IUCN Red List and the bibliography of Shark-References. Sharkipedia has profound potential to support the rapidly growing data demands of fisheries management, international trade regulation as well as anchoring vertebrate macroecology and macroevolution.
DOI: 10.5281/zenodo.5906578
title: Bovine pangenome assemblies

description: Assemblies used in analysis presented in https://doi.org/10.1101/2021.11.02.466900, containing the ARS-UCD1.2 reference genome and 32 assemblies compressed using agc. Breed/species included are: N - Nellore B - Brown Swiss G - Gaur P - Piedmontese H - Original Braunvieh (paternal) O - Original Braunvieh (maternal if also an H assembly, otherwise primary assembly) With the following breed/species and assembler combinations. {H,O,N,B,G,P}_hifiasm {H,O,N,B,G,P}_shasta {O,N,B,G,P}_flye {O,N,B,G,P}_raven {O,N,B,G,P}_hicanu {O,N,B,G,P}_peregrine
DOI: 10.4121/12716081
title: GOTOV Human Physical Activity and Energy Expenditure Dataset on Older Individuals

description: Wearable sensor-based data of physical activities and indirect calorimetry for 35 (14 female, 21 male) healthy older individuals (over 60 years old). The data has been collected from different body locations and devices: 3x GeneActives accelerometers (ankle, wrist, and chest), 1x Equivital (chest) and COSMED (mask and belt on chest). The 35 individuals followed a protocol of 16 activities of daily living for approximately an hour and a half in a semi-lab environment. These include different types or paces of indoor and outdoor activities with low (lying down, sitting), mid (standing, household activities) and high (walking and cycling) levels of intensity. Additionally, some activities can be specified at different granularities. The study took place at LUMC, between February and May 2015.