cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5606041.v1
title: Factors associated to inhospital mortality in patients with type 2 Diabetes Mellitus in three hospitals from the southern highlands of Peru

description: <b>Introduction</b>: The diabetes mortality has increased in recent years. In Peru, there are no studies about intra hospitable mortality due to diabetes in its provinces. <b>Objective</b>: Determine the associated factors to intra hospitable mortality with type 2 mellitus diabetes in three hospitals in the southern mountain range from Peru. <b>Methods</b>: An analytical cross-section has been made. All patients with type 2 diabetes mellitus hospitalized in Cusco during the year 2016 were included. The socio-educational and clinical characteristics were evaluated, having “death” as a variable of interest. It was calculated the reasons of crude and adjusted prevalence using the generalized linear models. With Poisson family and the connection log function. With their respective 95% confidence interval. Values &lt; 0.05 were considered significant. <b>Results</b>: from 153 patients, 33.3% (51) died in hospitalization. The frequency of mortality increased, the increase of patient's age (adjusted prevalence ratio 1.02; 95% confidence interval 1.01 to 1.03; p value &lt;0.001), having entered through the emergency service (adjusted prevalence ratio 1.93; 95% confidence interval 1.34 to 2.77; p value &lt;0.001), Being a patient who re-enters to the hospital (adjusted prevalence ratio 2,01; 95% confidence interval 1.36 to 2.98; p value &lt;0.001) and the one who has had a Metabolic hospital complication (adjusted prevalence ratio 1.61; 95% confidence interval 1.07 to 2.43; p value &lt;0.024) o renal (razón de prevalencia ajustada 1,47; intervalo de confianza del 95% 1,30 a 1,67; valor de p &lt; 0,001 ). Por otro lado, la frecuencia de mortalidad disminuyó y su causa de internación fue una infección urinaria renal (razón de prevalencia ajustada 0,50; intervalo de confianza del 95%: 0,35 a 0,72; valor p &lt; 0,001 ), ajustado por 7 variables . <b>Conclusión</b> : el aumento de cada año de vida, ingresando por urgencias y presentando reingresos a la hospitalización fueron factores asociados a la mortalidad, al igual que las complicaciones intrahospitalarias de tipo metabólico o renal.
DOI: 10.6084/m9.figshare.28172132.v1
title: Supplementary material for (COI insights into diversity and species delimitation of imma-ture stages of non-biting midges (Diptera: Chironomidae))

description: Combined_trees.trees: Posterior tree distribution combined from the two MCMC chains ran for the Bayesian analysis.mcct_tree_1.nwk: Maximum clade credibility tree from the combined tree distribution.mcct_mainfig.*: PDF and SVG files for Figure 1 in the main manuscriptmcct_plotting.*: HTML and Jupyter Notebook with the python code for producing the figures in the manuscript and supplementary materials.mcct_suppmatfig.*: PDF and SVG files for the figure in supplementary material, showing all posterior distribution values in the phylogeny.NTree*: XML files used for running the Bayesian analysis in Beast and the posterior tree distributions for each MCMC chain.Table2_2.csv: File with morphotype and OTU classification for each sequence in the MCC tree and the annotations used for plotting.GenBank accession table.csv: File with submission number, GenBank codes, accession numbers, and tip names.
DOI: 10.6084/m9.figshare.21624735.v1
title: health group.docx

description: AFP and PIVKA-II serum levels in 101 healthy group.
DOI: 10.6084/m9.figshare.28691981.v1
title: Charts

description: Data on consumer<b> </b>behavior in digital environment, digital buying decisions influenced by consumer preferences.
DOI: 10.6084/m9.figshare.12609401.v2
title: Source data for Fig. 3,4 in "Vernier frequency division with dual-microresonator solitons"

description: This source data file contains all of the raw data for the figure 3 and figure 4 in "Vernier frequency division with dual-microresonator solitons".
DOI: 10.6084/m9.figshare.28057085.v1
title: Source data for Figure 1 in Saado et al. 2024 bioRxiv

description: Source data for Figure 1 in Saado et al. (2024) bioRxiv that includes raw data such as FASTA, Phylip, and inventory used for data analysis and figure preparation.
DOI: 10.6084/m9.figshare.14045501.v2
title: Dataset0 for Robust weighted principal components analysis demodulation algorithm for phase-shifting interferometry

description: Dataset0 for Robust weighted principal components analysis demodulation algorithm for phase-shifting interferometry
DOI: 10.6084/m9.figshare.7926830.v4
title: Online Supplement

description: This is to serve as an online supplement to manuscript submission to AJP Lung entitled "Chemokine signaling axis between endothelial and myeloid cells regulates development of pulmonary hypertension associated with pulmonary fibrosis and hypoxia".
DOI: 10.6084/m9.figshare.5241409.v1
title: Erratum: 1,25-Dihydroxyvitamin D<sub>3</sub> Upregulates Functional C-X-C Chemokine Receptor Type 4 Expression in Human Eosinophils

description: <b><i>Background:</i></b> Epidemiological studies suggest that vitamin D may be protective against the inception and exacerbation of allergic diseases. However, the direct effect of vitamin D on eosinophils, the major effector cells in allergic inflammation, is not known. It has been reported that C-X-C chemokine receptor type 4 (CXCR4) in eosinophils is induced in non-Th2 cytokine milieu or in response to glucocorticoids, recruiting the cell to noninflammatory sites. <b><i>Objectives:</i></b> To test whether 1,25-dihydroxyvitamin D<sub>3</sub> [1,25-(OH)<sub>2</sub>D<sub>3</sub> or calcitriol], the active metabolite of vitamin D, acts directly on eosinophils to induce upregulation of CXCR4. <b><i>Methods:</i></b> Peripheral blood eosinophils from normal volunteers were isolated by CD16 immunomagnetic beads. Vitamin D receptor (VDR) expression was detected by RT-PCR. Eosinophils were cultured with 1,25-(OH)<sub>2</sub>D<sub>3</sub> and the survival and expression of CXCR4 on eosinophils were measured by flowcytometry. Eosinophil migration by CXCL-12/SDF-1 in the presence of 1,25-(OH)<sub>2</sub>D<sub>3</sub> was also analyzed. <b><i>Results:</i></b> Eosinophils expressed VDR. 1,25-(OH)<sub>2</sub>D<sub>3</sub> prolonged eosinophil survival and upregulated eosinophil surface expression of CXCR4 in a concentration-dependent manner. Interleukin (IL)-5 significantly reduced CXCR4 expression and migration induced by the ligand CXCL-12/SDF-1. 1,25-(OH)<sub>2</sub>D<sub>3</sub> reversed the negative effects of IL-5 on the CXCR4-CXCL12 pathway. <b><i>Conclusion:</i></b> 1,25-(OH)<sub>2</sub>D<sub>3</sub> regulates CXCR4 expression in eosinophils. The mechanism may be involved in eosinophil recruitment to noninflammatory sites where the ligand of CXCR4 is constitutively expressed.
DOI: 10.6084/m9.figshare.10287113.v1
title: C. elegans calcium imaging Mesmerize project

description: Please see the README for details.OverviewDataset containing a few recordings of spontaneous activity from <em>C. elegans</em> motorneurons.Opening the datasetThe dataset is compresed in tar archive with gzip compression. Decompression can take a while, you may get better performance if you read from a different filesystem than the one that you write to. I recommend using a fast filesystem to store the decompressed data since the image data is large.<strong><br></strong><strong>pigz</strong> should be faster for decompression compared to standard tar. For Ubuntu & Debian based distros you can install pigz through apt. For other distros please check your repositories.<code><br></code><code>sudo apt install pigz</code><br>On Mac OSX you can install pigz through brew. See this: https://brewinstall.org/Install-pigz-on-Mac-with-Brew/Decompressing:<code><br></code><code>pigz -dc c_elegans_mesmerize.tar.gz | tar -xf</code><br>If you cannot install pigz you can decompress with tar. This may take a long time.<code><br></code><code>tar xvzf c_elegans_mesmerize.tar.gz</code><br>This will probably decompress into a directory called "share". Navigate to <code>share/data/temp/kushal</code> and you should see the project directory "c_elegans_mesmerize".Once decompressed, you can explore the dataset using Mesmerize. Simply open the Project Directory through the Mesmerize Welcome Window (the window that you are presented with when you launch Mesmerize). You will see the available analysis flowcharts and plots similar to this: http://www.mesmerizelab.org/Overview.html#welcome-windowDouble click on a flowchart or plot to open it. See the "Flowchart" and "Plots" sections below for details.You can explore individual project samples by using the Project Browser and double-clicking on the samples of interest. Note that the image sequence is large (~50GB) so make sure you have enough RAM available if you want to view it.
DOI: 10.6084/m9.figshare.28328774.v1
title: Dataset for Students' Conceptual Understanding of Direct Current due to the Use of Systematic Problem-solving Strategy

description: This dataset consists of one MS Excel file. The file has three sheets; the first contains pretest scores from the Inventory of Basic Conceptions in Direct Circuits (IBCDC) tool, the second contains posttest scores from the IBCDC tool, and the third contains correct answers for each item (question) of IBCDC tool. A quasi-experimental design was used, involving 152 senior five students from four Rwandan secondary schools, with 65 students in the experimental group and 87 in the control group. Both groups were administered a pre-test and post-test using the Inventory of Basic Conceptions in Direct Circuits (IBCDC) tool, which is widely recognized for diagnosing misconceptions and assessing conceptual understanding in physics. The SPPS strategy served as the intervention for the experimental group, guiding students through a structured five-step process to solve physics problems systematically.
DOI: 10.6084/m9.figshare.19393898.v1
title: Internet addiction, self-control and depression among boys and girls: A moderated mediation analysis

description: The relationship between depression and Internet addiction in adolescents was the aim of previous research but less is known about the mechanism underlying this association. The aim of this study was to explore the role of self-control, loneliness and gender in the association between depression and Internet addiction.
DOI: 10.6084/m9.figshare.24923781.v2
title: <b>Genome assembly of the milky mangrove </b><b>Excoecaria agallocha</b>

description: The milky mangrove Excoecaria agallocha is a latex-secreting mangrove that are distributed in tropical and subtropical regions. While its poisonous latex is regarded as a potential source of phytochemicals for biomedical applications, the genomic resources of E. agallocha remains limited. Here, we present a chromosomal level genome of E. agallocha, assembled from the combination of PacBio long-read sequencing and Omni-C data. The resulting assembly size is 1,332.45 Mb and has high contiguity and completeness with a scaffold N50 of 58.9 Mb and a BUSCO score of 98.4 %. 73,740 protein-coding genes were also predicted. The milky mangrove genome provides a useful resource for further understanding the biosynthesis of phytochemical compounds in E. agallocha.
DOI: 10.6084/m9.figshare.5125759.v1
title: Supplementary Material for: An Integrated Stroke Model with a Consistent Penumbra for the Assessment of Neuroprotective Interventions

description: <b><i>Background/Aim:</i></b> A longer period of vessel occlusion reduces the coefficient of variation of the infarct lesion size [‘infarct variation coefficient' (IVC)] due to a gradual expansion of the lesion within a limited territory defined by the vascular anatomy, but it increases the mortality rate. A crucial issue in the induction of experimental focal cerebral ischemia has been to achieve a low IVC value and a low mortality rate. We attempted to improve IVC and mortality using the 3-vessel occlusion model. <b><i>Methods:</i></b> We introduced a new, transtemporal fascia approach to expose the zygomatic arch, in which the fascia of the temporal muscle is cut and retracted dorsally together with the facial nerve and the vein en bloc. <b><i>Results/Conclusion:</i></b> The approach avoided traumatic venous bleeding around the zygomatic arch. We established a bloodless model of focal ischemia that can produce a consistent degree of reduction in the regional cerebral blood flow within the ischemic penumbra. The model, characterized by a 15-min ischemia, an IVC of 15-21%, and low mortality after ischemia, is expected to produce reliable preclinical evidence in the assessment of neuroprotective interventions for ischemic stroke. The entire procedure is presented in the online supplementary video (www. karger.com/doi/10.1159/000356048).
DOI: 10.6084/m9.figshare.9751796.v1
title: Supplementary Material for: Spicy Food Consumption and Risk of Uninvestigated Heartburn in Isfahani Adults

description: <b><i>Background/Objective:</i></b> Dietary recommendations for the consumption of spicy foods in uninvestigated heartburn are still under debate. We examine the association between spicy food consumption and the prevalence of uninvestigated heartburn in a large sample of Iranian adults. <b><i>Methods:</i></b> This cross-sectional study was conducted among 4,633 Iranian adults living in Isfahan (2,046 men, 2,587 women) in 2010. The average daily intake of spicy foods was estimated using a dietary habit questionnaire. Uninvestigated heartburn was defined, using a validated Rome III questionnaire, as the presence of heartburn sometimes, often or always during the last 3 months. <b><i>Results:</i></b> Uninvestigated heartburn was prevalent in 23.8% (<i>n</i> = 1,103) of participants. After controlling for potential confounders, including dietary behaviors and body mass index, men consuming spicy foods ≥10 times/week were 2.63 times more likely to have uninvestigated heartburn (95% CI:1.28–5.36) compared with those who never consumed spicy foods. Also, those men with the highest consumption of spicy foods were 3 times more likely to experience heartburn frequently (95% CI 1.44–6.39) compared with men with the lowest intake. No overall significant associations were found between the consumption of spicy foods and uninvestigated heartburn, including the frequency and severity of heartburn, in women. When the analysis was restricted to those with uninvestigated heartburn, no significant associations were found between consumption of spicy foods and frequency of heartburn either in men or women. <b><i>Conclusion:</i></b> The present findings suggest that high consumption of spicy foods was associated with a greater risk of uninvestigated heartburn in men, but not in women. Further studies, particularly of a prospective nature, are needed to confirm our findings, as well as underlying mechanisms.
DOI: 10.6084/m9.figshare.26045992.v2
title: ETID2C-DTA.zip

description: Drug target affinity prediction
DOI: 10.6084/m9.figshare.26970586.v1
title: 120 GOPS Photonic Tensor Core in Thin-film Lithium Niobate for Inference and in-situ Training

description: This file is the source data for "120 GOPS Photonic Tensor Core in Thin-film Lithium Niobate for Inference and in-situ Training"
DOI: 10.6084/m9.figshare.23522556.v1
title: Data FDI-Growth

description: Data to study the effect of FDI on growth dealing with the headquarters effect
DOI: 10.6084/m9.figshare.27625371.v1
title: PUBLIC ScienceTok Video Data Collection & Analysis.xlsx

description: This study explores how TikTok is used for professional development in elementary science instruction. Framed using the construct of Peer Pedagogies, the authors employ a digital ethnographic approach to address how peer pedagogies are present in a corpus of 25 elementary-focused #ScienceTok videos. Findings suggest that content creators model student inquiry. The comments demonstrate discourses of peer learning and community building, admiration for the teaching strategy, and stated intention to apply the video in their own classrooms. This study has implications for the field of elementary teacher preparation as well as professional development for practicing elementary science teachers.<br>
DOI: 10.6084/m9.figshare.20361777.v2
title: Data for Illumina Paired-End Lab

description: Data for Illumina Paired-End Lab in STAMPS 2023.
DOI: 10.6084/m9.figshare.3103060.v1
title: EDDMQoL- Dataset for the Study on Diabetes-Related Distress, Depression and Distress-Depression among Adults with Type 2 Diabetes Mellitus in Malaysia.sav

description: 700 adults with type 2 diabetes mellitus (T2DM) of the three main ethnicity in Malaysia on regular follow-ups and medical care at three public health clinics. Participants were at least 30 years of age, known T2DM for more than one year. They were not pregnant or lactating, nor having psychiatric/psychological disorders that could impair judgments and memory at the time of participating in the study in 2013.
DOI: 10.6084/m9.figshare.28124483.v1
title: FUCCI U2OS cells

description: U2OS cell cycle data, original from Mahdessian, D. et al. (https://www.nature.com/articles/s41586-021-03232-9)
DOI: 10.6084/m9.figshare.28203218.v1
title: <b>Contrasting responses of plant diversity and soil microbial</b><b> </b><b>diversity to altered phosphorus supply</b>

description: Biodiversity underpins critical ecological processes, yet its relationship with phosphorus (P) remains poorly understood globally. In particular, it is essential to explore how plant diversity and soil microbial diversity respond distinctly to changes in P availability on a global scale. This study aims to assess the responses of global-scale plant diversity and soil microbial diversity to altered P supply using a meta-analytical technique, with 998 observations from 111 field P addition experimentsand a natural gradient analysis of foresttree diversityand vascular plant diversity.Our results showed that P additions reduced plant richness by 7.4% and the Shannon index by 2.4%, but had minor effects on soil bacterial diversity (0.9/0.2/0.2%) and fungal diversity (-1.3/2.7/1.1%) in global grasslands. P additions also had minor effects on soil bacterial and fungal diversity in forests and croplands. Natural gradient analysis showed that both forest tree richness and vascular plant richness were significantly related to soil total Pconcentration, either positively or negatively, depend on the environmental variables controlled for partial correlation analyses. These findings collectively suggest that plant diversity exhibits greater sensitivity to altered soil P availability than soil microbial diversity. Therefore, improved understanding the distinct responses of above- and below-ground biodiversity to altered nutrient supply provides a scientific foundation for implementing sound management practices of terrestrial functions and processes.
DOI: 10.6084/m9.figshare.13182716.v3
title: Endotherm Gut Passage Data

description: Gut passage time data for mammals and birds
DOI: 10.6084/m9.figshare.5559208.v1
title: Supplementary Material for: Deferoxamine-Induced Migration and Odontoblast Differentiation via ROS-Dependent Autophagy in Dental Pulp Stem Cells

description: <b><i>Background/Aims:</i></b> As a vital degradation and recycling system, autophagy plays an essential role in regulating the differentiation of stem cells. We previously showed that iron chelator deferoxamine (DFO) could promote the repair ability of dental pulp stem cells (DPSCs). Here, we investigated the effect of DFO in autophagy and the role of autophagy in regulating the migration and odontoblast differentiation of DPSCs. <b><i>Methods:</i></b> Transmission electron microscopy, immunofluorescence staining and western blotting were performed to evaluate the autophagic activity of DPSCs. Transmigration assay, alkaline phosphatase staining/activity, alizarin red S staining and quantitative PCR were performed to examine the migration and odontoblast differentiation of DPSCs. Reactive oxygen species (ROS) levels and the effects of ROS scavenger in autophagy induction were also detected. Autophagy inhibitors (3-MA and bafilomycin A1) and lentiviral vectors carrying ATG5 shRNA sequences were used for autophagy inhibition. <b><i>Results:</i></b> Early exposure to DFO promoted the mineralization of DPSCs and increased autophagic activity. Autophagy inhibition suppressed DFO-induced DPSC migration and odontoblast differentiation. Furthermore, DFO treatment could induce autophagy partly through hypoxia-inducible factor 1α/B cell lymphoma 2/adenovirus E1B 19K-interacting protein 3 (HIF-1α/BNIP3) pathway in a ROS-dependent manner. <b><i>Conclusion:</i></b> DFO increased DPSC migration and differentiation, which might be modulated through ROS-induced autophagy.
DOI: 10.15468/dl.d9qrwd
title: Occurrence Download

description: A dataset containing 1830466 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eucalyptus L'Hér."
 ]
}

 The dataset includes 1830466 records from 1061 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009586-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/13096403.v1
title: Data from: Energy savings in greenhouses by transition from high-pressure sodium to LED lighting

description: These simulations describe the dynamic changes (5 minute intervals) of the indoor climate (temperature, humidity, CO2 concentration) and energy consumption (lighting and heating) of a simulated greenhouse season in a typical meteorological year (350 days starting September 27). A modern, Venlo type, 4 hectare greenhouse with a tomato crop is simulated, with either HPS or LED lamps. 15 different weather scenarios from around the world are included, as well as various settings for design and climate control. The GreenLight model, https://github.com/davkat1/GreenLight, was used for this purpose.
DOI: 10.6084/m9.figshare.17205773.v1
title: Supplementary Material for: Clinical Implications of Chromosome 16 Copy Number Variation

description: Chromosome 16 is one of the gene-rich chromosomes; however, approximately 10% of the chromosome 16 sequence is composed of segmental copies, which renders this chromosome instable and predisposes it to rearrangements via frequent nonallelic homologous recombination. Microarray technologies have enabled the analysis of copy number variations (CNV), which may be associated with the risk of developing complex diseases. Through comparative genomic hybridisation in 1,298 patients, we detected 18 cases with chromosome 16 CNV. We identified 2recurrent CNV regions, including 1 at 16p13.11 in 4 patients and another at 16p11.2 in 7 patients. We also detected atypical chromosome 16 rearrangements in 7 patients. Furthermore, we noted an increased frequency of co-occurring genomic changes, supporting the two-hit hypothesis to explain the phenotypic variability in the clinical presentation of CNV syndromes. Our findings can contribute to the creation of a chromosome 16 disease map based on regions that may be associated with disease development.
DOI: 10.6084/m9.figshare.19665627.v1
title: Raw data for 16S rRNA.xlsx

description: OTU table output after 16S rRNA detection, in which all detected species are annotated. The dataset contains two sub-tables. Table 1. 10 samples. Divided into two groups. The first five samples were faeces from pro-menopausal normal women. The other five samples were faeces from postmenopausal women with coronary heart disease. Table 2. 48 samples. They were divided into 7 groups with 6 samples in each group. The samples were mouse feces. Including feces of C57BL/6 and LDLR-/- mice. They also included feces from mice with fecal bacteria transplantation or antibiotics treatment. The grouped information is annotated in the table.