cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7502083
title: Dynamics of activation in the voltage-sensing domain of Ci-VSP

description: This dataset contains unbiased molecular dynamics trajectories, stripped of water and lipid coordinates due to size constraints. It also contains full initial and final structures for all trajectories.
Description of the data and file structure
The data are deposited as a .tar.gz file: it can be unpacked by running tar -xzvf traj-data.tar.gz.
The trajectories are organized into two groups (group1 and group2), each containing a folder with stripped_trajs as .xtc files, as well as the full starting and ending coordinates (with waters and lipids) as intial_structs and final_structs. The models for the down--, down, up, and up+ states are in models.
The parameter file is civsd-amber-top.parm7 and the topology files with and withoutthe waters/lipids are civsd.psf and civsd-pro.psf
Sharing/Access information
Derived data (collective variables computed from the raw trajectories) are available as supplementary information to the accompanying publication.
Code/Software
Analysis of the trajectories can be performed using the MDAnalysis, MDTraj, PyEMMA, scikit-learn, and VMD, softwares along with custom codes written in Python/Jupyter notebooks and tcl. Custom codes are available at https://github.com/dinner-group/ci-vsd.
DOI: 10.5281/zenodo.7502084
title: Dynamics of activation in the voltage-sensing domain of Ci-VSP

description: Data files to reproduce the results of Figure 1 in "Dynamics of activation in the voltage-sensing domain of Ci-VSP" by Guo et al. Code to perform analysis associated is found at https://github.com/dinner-group/ci-vsd.
description: {"references": ["Guo, Spencer et al. (2022) Dynamics of activation in the voltage-sensing domain of Ci-VSP. bioRxiv 2022.12.19.521128; doi: https://doi.org/10.1101/2022.12.19.521128"]}
DOI: 10.5281/zenodo.8096833
title: Dynamics of activation in the voltage-sensing domain of Ci-VSP

description: Data files to reproduce the results of Figure 5 in "Dynamics of activation in the voltage-sensing domain of Ci-VSP" by Guo et al. Code to perform analysis associated is found at https://github.com/dinner-group/ci-vsd.
description: {"references": ["Guo, Spencer et al. (2022) Dynamics of activation in the voltage-sensing domain of Ci-VSP. bioRxiv 2022.12.19.521128; doi: https://doi.org/10.1101/2022.12.19.521128"]}
DOI: 10.18739/a2db7vr82
title: Firn core density and ice content at sites along the lower Expéditions Glaciologiques Internationales au Groenland (EGIG) line, Western Greenland, 2023

description: This archive contains data collected at sites located along the lower elevation portion of the Expéditions Glaciologiques Internationales au Groenland (EGIG) line, Western Greenland Ice Sheet. The data include the physical stratigraphy measured in firn cores extending to depths of up to ~30 meter (m) with measurements of firn density and refrozen ice content. The data were collected as part of an Arctic Observing Network (AON) project funded by the U.S. National Science Foundation. Each of the study sites is located in the Greenland Ice Sheet’s Percolation Zone, the outer flanks of the accumulation zone that experiences surface melt during the summer period. Data collection for this AON project began in 2022, and is expected to continue through 2025. This dataset will be associated with additional datasets, including physical stratigraphy and density measured in ice cores and firn temperature time series measured in core holes, as they become available in future years. Additional sites with will be added in future years, and additional data from existing sites will be collected.
DOI: 10.34740/kaggle/dsv/7157440
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.34740/kaggle/dsv/7157447
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.5281/zenodo.10309413
title: Numerical Data for fkdv and KS equations
DOI: 10.5281/zenodo.10309412
title: Numerical Data for fkdv and KS equations
DOI: 10.48324/dandi.000678/0.231004.2146
title: Pupil and movement measurements during mouse auditory and visual discrimination

description: Pupil diameter, face motion energy, and locomotion speed measures recorded during sensory discrimination behavior of head-fixed mice. Subjects classify the frequency of an auditory tone cloud stimulus, or the angle of a drifting Gabor patch, at right or left lick ports. Data include 391 behavioral sessions from 13 subjects. For more information see the preprint at https://www.biorxiv.org/content/10.1101/2023.03.02.530651v2.
DOI: 10.5281/zenodo.10278515
title: Description of Dataset and 1.33km and 4km Base CAMx modeling results

description: Description of dataset 
Eagle Ford Shale CH4 and CO2 emissions (10.5281/zenodo.10278516)

Filename: Eagle Ford Shale CH4 and CO2 emissions 11Sep2023.xslx
Description: CH4 and CO2 emissions at well-level, gathering-level and plant-level
Processing step: both CH4 and CO2 emissions are processed into a gridded format using SMOKE, with no temporal variations.
CAMx gridded outputs

Domain definition (GRIDDESC)
'LAM_40N97W'
 2       33.000        45.000       -97.000       -97.000        40.000
'txs_4km'
'LAM_40N97W'  -324000.000 -1584000.000  4000.000  4000.000 189 234   1
'txs_133km'
'LAM_40N97W'  -324000.000 -1476000.000  1333.333  1333.333 378 459   1

CAMx configurations:
Version 7.10
Simulation time period: 2019 April 1st – October 31st (with a 15-day spin-up)
Chemistry turned off
Zero initial and boundary concentration of CH4/CO2
Output:
Gridded surface concentration and column concentration are provided in the following folder structure: 

domain/scenario/surface for surface concentration
domain/scenario/column for column concentration.
Two domains are available: txs_4km and txs_133km. There are ten sets of scenarios for each domain:

base: routine CO2/CH4 emissions (10.5281/zenodo.10278516)
Event Scenarios 1.33km: 10.5281/zenodo.10261056; 4km: 10.5281/zenodo.10255627
low_100kg/1000kg: 100/1000 kg/hr emission event added with low routine emissions
med_100kg/1000kg: 100/1000 kg/hr emission event added with medium routine emissions
high_100kg/1000kg: 100/1000 kg/hr emission event added with high routine emissions
nearby_low/med/high: 100/1000kg/hr emission events added at nearby locations
For example, files under 'txs_4km/base/surface' represent hourly gridded surface CH4/CO2 concentration (ppmv) with a spatial resolution of 4km x 4km. Similarly, files under 'txs_13km/nearby_high/column' represent hourly gridded CH4 column concentration (mol/m2) with a spatial resolution of 4km x 4km under scenario 'nearby_high'.
DOI: 10.5281/zenodo.10278516
title: Description of Dataset and 1.33km and 4km Base CAMx modeling results

description: Description of dataset 
Eagle Ford Shale CH4 and CO2 emissions (10.5281/zenodo.10278516)

Filename: Eagle Ford Shale CH4 and CO2 emissions 11Sep2023.xslx
Description: CH4 and CO2 emissions at well-level, gathering-level and plant-level
Processing step: both CH4 and CO2 emissions are processed into a gridded format using SMOKE, with no temporal variations.
CAMx gridded outputs

Domain definition (GRIDDESC)
'LAM_40N97W'
 2       33.000        45.000       -97.000       -97.000        40.000
'txs_4km'
'LAM_40N97W'  -324000.000 -1584000.000  4000.000  4000.000 189 234   1
'txs_133km'
'LAM_40N97W'  -324000.000 -1476000.000  1333.333  1333.333 378 459   1

CAMx configurations:
Version 7.10
Simulation time period: 2019 April 1st – October 31st (with a 15-day spin-up)
Chemistry turned off
Zero initial and boundary concentration of CH4/CO2
Output:
Gridded surface concentration and column concentration are provided in the following folder structure: 

domain/scenario/surface for surface concentration
domain/scenario/column for column concentration.
Two domains are available: txs_4km and txs_133km. There are ten sets of scenarios for each domain:

base: routine CO2/CH4 emissions (10.5281/zenodo.10278516)
Event Scenarios 1.33km: 10.5281/zenodo.10261056; 4km: 10.5281/zenodo.10255627
low_100kg/1000kg: 100/1000 kg/hr emission event added with low routine emissions
med_100kg/1000kg: 100/1000 kg/hr emission event added with medium routine emissions
high_100kg/1000kg: 100/1000 kg/hr emission event added with high routine emissions
nearby_low/med/high: 100/1000kg/hr emission events added at nearby locations
For example, files under 'txs_4km/base/surface' represent hourly gridded surface CH4/CO2 concentration (ppmv) with a spatial resolution of 4km x 4km. Similarly, files under 'txs_13km/nearby_high/column' represent hourly gridded CH4 column concentration (mol/m2) with a spatial resolution of 4km x 4km under scenario 'nearby_high'.
DOI: 10.5281/zenodo.10305899
title: Proton dissociation and delocalization under stepwise hydration of zeolite HZSM-5

description: This is a data archive for the publication: 
"Proton dissociation and delocalization under stepwise hydration of zeolite HZSM-5" John H. Hack, Xinyou Ma, Yaxin Chen, James P. Dombrowski, Nicholas H. C. Lewis, Chenghan Li, Harold H. Kung, Gregory A. Voth, and Andrei Tokmakoff. The Journal of Physical Chemistry C 2023 127 (32), 16175-16186. DOI: 10.1021/acs.jpcc.3c03611
DOI: 10.5281/zenodo.10305900
title: Proton dissociation and delocalization under stepwise hydration of zeolite HZSM-5

description: This is a data archive for the publication: 
"Proton dissociation and delocalization under stepwise hydration of zeolite HZSM-5" John H. Hack, Xinyou Ma, Yaxin Chen, James P. Dombrowski, Nicholas H. C. Lewis, Chenghan Li, Harold H. Kung, Gregory A. Voth, and Andrei Tokmakoff. The Journal of Physical Chemistry C 2023 127 (32), 16175-16186. DOI: 10.1021/acs.jpcc.3c03611
DOI: 10.34740/kaggle/dsv/7157453
title: Trending Youtube Video Statistics (113 Countries)
DOI: 10.5281/zenodo.10255626
title: 4km Event Column and Surface CAMx modeling
title: 4km CAMx Output

description: Description of dataset 
Eagle Ford Shale CH4 and CO2 emissions (10.5281/zenodo.10278516)

Filename: Eagle Ford Shale CH4 and CO2 emissions 11Sep2023.xslx
Description: CH4 and CO2 emissions at well-level, gathering-level and plant-level
Processing step: both CH4 and CO2 emissions are processed into a gridded format using SMOKE, with no temporal variations.
CAMx gridded outputs

Domain definition (GRIDDESC)
'LAM_40N97W'
 2       33.000        45.000       -97.000       -97.000        40.000
'txs_4km'
'LAM_40N97W'  -324000.000 -1584000.000  4000.000  4000.000 189 234   1
'txs_133km'
'LAM_40N97W'  -324000.000 -1476000.000  1333.333  1333.333 378 459   1

CAMx configurations:
Version 7.10
Simulation time period: 2019 April 1st – October 31st (with a 15-day spin-up)
Chemistry turned off
Zero initial and boundary concentration of CH4/CO2
Output:
Gridded surface concentration and column concentration are provided in the following folder structure: 

domain/scenario/surface for surface concentration
domain/scenario/column for column concentration.
Two domains are available: txs_4km and txs_133km. There are ten sets of scenarios for each domain:

base: routine CO2/CH4 emissions (10.5281/zenodo.10278516)
Event Scenarios 1.33km: 10.5281/zenodo.10261056; 4km: 10.5281/zenodo.10255627
low_100kg/1000kg: 100/1000 kg/hr emission event added with low routine emissions
med_100kg/1000kg: 100/1000 kg/hr emission event added with medium routine emissions
high_100kg/1000kg: 100/1000 kg/hr emission event added with high routine emissions
nearby_low/med/high: 100/1000kg/hr emission events added at nearby locations
For example, files under 'txs_4km/base/surface' represent hourly gridded surface CH4/CO2 concentration (ppmv) with a spatial resolution of 4km x 4km. Similarly, files under 'txs_13km/nearby_high/column' represent hourly gridded CH4 column concentration (mol/m2) with a spatial resolution of 4km x 4km under scenario 'nearby_high'.
DOI: 10.5281/zenodo.10255627
title: 4km Event Column and Surface CAMx modeling
title: 4km CAMx Output

description: Description of dataset 
Eagle Ford Shale CH4 and CO2 emissions (10.5281/zenodo.10278516)

Filename: Eagle Ford Shale CH4 and CO2 emissions 11Sep2023.xslx
Description: CH4 and CO2 emissions at well-level, gathering-level and plant-level
Processing step: both CH4 and CO2 emissions are processed into a gridded format using SMOKE, with no temporal variations.
CAMx gridded outputs

Domain definition (GRIDDESC)
'LAM_40N97W'
 2       33.000        45.000       -97.000       -97.000        40.000
'txs_4km'
'LAM_40N97W'  -324000.000 -1584000.000  4000.000  4000.000 189 234   1
'txs_133km'
'LAM_40N97W'  -324000.000 -1476000.000  1333.333  1333.333 378 459   1

CAMx configurations:
Version 7.10
Simulation time period: 2019 April 1st – October 31st (with a 15-day spin-up)
Chemistry turned off
Zero initial and boundary concentration of CH4/CO2
Output:
Gridded surface concentration and column concentration are provided in the following folder structure: 

domain/scenario/surface for surface concentration
domain/scenario/column for column concentration.
Two domains are available: txs_4km and txs_133km. There are ten sets of scenarios for each domain:

base: routine CO2/CH4 emissions (10.5281/zenodo.10278516)
Event Scenarios 1.33km: 10.5281/zenodo.10261056; 4km: 10.5281/zenodo.10255627
low_100kg/1000kg: 100/1000 kg/hr emission event added with low routine emissions
med_100kg/1000kg: 100/1000 kg/hr emission event added with medium routine emissions
high_100kg/1000kg: 100/1000 kg/hr emission event added with high routine emissions
nearby_low/med/high: 100/1000kg/hr emission events added at nearby locations
For example, files under 'txs_4km/base/surface' represent hourly gridded surface CH4/CO2 concentration (ppmv) with a spatial resolution of 4km x 4km. Similarly, files under 'txs_13km/nearby_high/column' represent hourly gridded CH4 column concentration (mol/m2) with a spatial resolution of 4km x 4km under scenario 'nearby_high'.
DOI: 10.5281/zenodo.10261055
title: 1.33km Event Column and Surface CAMx modeling

description: Description of dataset 
Eagle Ford Shale CH4 and CO2 emissions (10.5281/zenodo.10278516)

Filename: Eagle Ford Shale CH4 and CO2 emissions 11Sep2023.xslx
Description: CH4 and CO2 emissions at well-level, gathering-level and plant-level
Processing step: both CH4 and CO2 emissions are processed into a gridded format using SMOKE, with no temporal variations.
CAMx gridded outputs

Domain definition (GRIDDESC)
'LAM_40N97W'
 2       33.000        45.000       -97.000       -97.000        40.000
'txs_4km'
'LAM_40N97W'  -324000.000 -1584000.000  4000.000  4000.000 189 234   1
'txs_133km'
'LAM_40N97W'  -324000.000 -1476000.000  1333.333  1333.333 378 459   1

CAMx configurations:
Version 7.10
Simulation time period: 2019 April 1st – October 31st (with a 15-day spin-up)
Chemistry turned off
Zero initial and boundary concentration of CH4/CO2
Output:
Gridded surface concentration and column concentration are provided in the following folder structure: 

domain/scenario/surface for surface concentration
domain/scenario/column for column concentration.
Two domains are available: txs_4km and txs_133km. There are ten sets of scenarios for each domain:

base: routine CO2/CH4 emissions (10.5281/zenodo.10278516)
Event Scenarios 1.33km: 10.5281/zenodo.10261056; 4km: 10.5281/zenodo.10255627
low_100kg/1000kg: 100/1000 kg/hr emission event added with low routine emissions
med_100kg/1000kg: 100/1000 kg/hr emission event added with medium routine emissions
high_100kg/1000kg: 100/1000 kg/hr emission event added with high routine emissions
nearby_low/med/high: 100/1000kg/hr emission events added at nearby locations
For example, files under 'txs_4km/base/surface' represent hourly gridded surface CH4/CO2 concentration (ppmv) with a spatial resolution of 4km x 4km. Similarly, files under 'txs_13km/nearby_high/column' represent hourly gridded CH4 column concentration (mol/m2) with a spatial resolution of 4km x 4km under scenario 'nearby_high'.
DOI: 10.5281/zenodo.10261056
title: 1.33km Event Column and Surface CAMx modeling

description: Description of dataset 
Eagle Ford Shale CH4 and CO2 emissions (10.5281/zenodo.10278516)

Filename: Eagle Ford Shale CH4 and CO2 emissions 11Sep2023.xslx
Description: CH4 and CO2 emissions at well-level, gathering-level and plant-level
Processing step: both CH4 and CO2 emissions are processed into a gridded format using SMOKE, with no temporal variations.
CAMx gridded outputs

Domain definition (GRIDDESC)
'LAM_40N97W'
 2       33.000        45.000       -97.000       -97.000        40.000
'txs_4km'
'LAM_40N97W'  -324000.000 -1584000.000  4000.000  4000.000 189 234   1
'txs_133km'
'LAM_40N97W'  -324000.000 -1476000.000  1333.333  1333.333 378 459   1

CAMx configurations:
Version 7.10
Simulation time period: 2019 April 1st – October 31st (with a 15-day spin-up)
Chemistry turned off
Zero initial and boundary concentration of CH4/CO2
Output:
Gridded surface concentration and column concentration are provided in the following folder structure: 

domain/scenario/surface for surface concentration
domain/scenario/column for column concentration.
Two domains are available: txs_4km and txs_133km. There are ten sets of scenarios for each domain:

base: routine CO2/CH4 emissions (10.5281/zenodo.10278516)
Event Scenarios 1.33km: 10.5281/zenodo.10261056; 4km: 10.5281/zenodo.10255627
low_100kg/1000kg: 100/1000 kg/hr emission event added with low routine emissions
med_100kg/1000kg: 100/1000 kg/hr emission event added with medium routine emissions
high_100kg/1000kg: 100/1000 kg/hr emission event added with high routine emissions
nearby_low/med/high: 100/1000kg/hr emission events added at nearby locations
For example, files under 'txs_4km/base/surface' represent hourly gridded surface CH4/CO2 concentration (ppmv) with a spatial resolution of 4km x 4km. Similarly, files under 'txs_13km/nearby_high/column' represent hourly gridded CH4 column concentration (mol/m2) with a spatial resolution of 4km x 4km under scenario 'nearby_high'.
DOI: 10.34740/kaggle/dsv/7157470
title: Full TMDB Movies Dataset 2023 (930K Movies)
DOI: 10.13026/kyfs-5608
title: CAD-Chest: Comprehensive Annotation of Diseases based on MIMIC-CXR Radiology Report

description: Several extant chest X-ray (CXR) datasets predominantly comprise binary
disease labels and exhibit a deficiency in providing comprehensive disease-
related information. Crucial facets of disease management, including disease
severity, diagnostic uncertainty, and precise localization, are often absent
in these datasets, yet they hold substantial clinical significance. In this
work, we present a comprehensive annotation of disease (CAD) on CXR images,
which is named CAD-Chest dataset. We have leveraged radiology reports authored
by medical professionals to meticulously devise label extraction protocols.
These protocols facilitate the extraction of essential disease-related
attributes, encompassing disease name, severity grading, and additional
pertinent details. This dataset is poised to empower researchers and
practitioners by offering a holistic perspective on diseases, transcending the
mere presence or absence of binary classification.
DOI: 10.13026/44pd-vz36
title: CAD-Chest: Comprehensive Annotation of Diseases based on MIMIC-CXR Radiology Report

description: Several extant chest X-ray (CXR) datasets predominantly comprise binary
disease labels and exhibit a deficiency in providing comprehensive disease-
related information. Crucial facets of disease management, including disease
severity, diagnostic uncertainty, and precise localization, are often absent
in these datasets, yet they hold substantial clinical significance. In this
work, we present a comprehensive annotation of disease (CAD) on CXR images,
which is named CAD-Chest dataset. We have leveraged radiology reports authored
by medical professionals to meticulously devise label extraction protocols.
These protocols facilitate the extraction of essential disease-related
attributes, encompassing disease name, severity grading, and additional
pertinent details. This dataset is poised to empower researchers and
practitioners by offering a holistic perspective on diseases, transcending the
mere presence or absence of binary classification.
DOI: 10.5517/ccdc.csd.cc2gghjz
title: CCDC 2278051: Experimental Crystal Structure Determination

description: Related Article: Lintao Zeng, Yingjun Ke, Xiaorui Yang, Minhuan Lan, Shaojing Zhao, Beitong Zhu|2024|Food Chem.|438|138044|doi:10.1016/j.foodchem.2023.138044
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gpdcy
title: CCDC 2284680: Experimental Crystal Structure Determination

description: Related Article: Zongwen Yao, Lin Chen, Min Hu, Fancheng Meng, Min Chen, Guowei Wang|2023|Bioorg.Chem.|143|106979|doi:10.1016/j.bioorg.2023.106979
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gpjk8
title: CCDC 2284810: Experimental Crystal Structure Determination

description: Related Article: Lintao Zeng, Yingjun Ke, Xiaorui Yang, Minhuan Lan, Shaojing Zhao, Beitong Zhu|2024|Food Chem.|438|138044|doi:10.1016/j.foodchem.2023.138044
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gs04f
title: CCDC 2287184: Experimental Crystal Structure Determination

description: Related Article: Abhijit Chatterjee, Joy Chatterjee, Subrahmanyam Sappati, Riteeka Tanwar, Madan D. Ambhore, Habibul Arfin, Rintu M. Umesh, Mayurika Lahiri, Pankaj Mandal, Partha Hazra|2023|Chemical Science|14|13832|doi:10.1039/D3SC04280D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gs05g
title: CCDC 2287185: Experimental Crystal Structure Determination

description: Related Article: Abhijit Chatterjee, Joy Chatterjee, Subrahmanyam Sappati, Riteeka Tanwar, Madan D. Ambhore, Habibul Arfin, Rintu M. Umesh, Mayurika Lahiri, Pankaj Mandal, Partha Hazra|2023|Chemical Science|14|13832|doi:10.1039/D3SC04280D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gzsr0
title: CCDC 2293713: Experimental Crystal Structure Determination

description: Related Article: Shigeyuki Yamada, Keigo Yoshida, Mitsuo Hara, Tomohiro Agou, Motohiro Yasui, Tsutomu Konno|2024|J.Mol.Liq.|393|123545|doi:10.1016/j.molliq.2023.123545
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.