cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17063565
title: Structures of FDA-approved drugs and their active metabolites and data sets of experimental PD and PK properties

description: Data sets are extracted from the 2024 release of the e-Drug3D Database (2118 FDA-approved drug structures)



e-Drug3D_2118.zip (contains e-Drug3D_2118.sdf) - Chemical Structures - The e-Drug3D collection in SDF format file -  one 3D conformer; ionization of carboxylic acid, phosphate, phosphonate, phosphonoamide, amidinium and guanidinium groups. The datablock contains the ID, name (INN), CAS number and Status.

e-Drug3D_2118_PK.csv - Pharmacokinetics - Column/field value is separated by a semicolon. It contains the e-Drug3D ID, INN (drug name), CAS number, year of approval, Status, is_or_has a metabolite, routes of administration, Volume of distribution (VD), Clearance (Cl), Plasma Protein Binding (PPB), Half-life (t1/2), Bioavailability (F), Cmax/Tmax, comment on solubility.

e-Drug3D_2118_PD.csv - Pharmacodynamics - Column/field value is separated by a semicolon. It contains the e-Drug3D ID, INN (drug name), CAS number, year of approval, Status, Primary target, ATC code(s), PDB codes and main list of drug targets.

e-Drug3D_2118_RD.csv - FDA Registration Data - Column/field value is separated by a semicolon. It contains the ID, name (INN), CAS number, First year of approval, Status, KNApSAcK or NPAtlas Id if natural product, all associated NDA numbers [FDA approval number, name of the label file in PDF format, company name, year of approval and commercial name of the drug] and the Indication/Therapeutic class information.

labels.tar.gz - The drug label files in PDF format (compressed directory). A label file is named with the NDA number. The NDA number is the approval number assigned by the FDA. A drug may possess several NDA numbers (see the above e-Drug3D-RD data set).
DOI: 10.5281/zenodo.4432351
title: Structures of FDA-approved drugs and their active metabolites and data sets of experimental PD and PK properties

description: Data sets are extracted from the 2024 release of the e-Drug3D Database (2118 FDA-approved drug structures)



e-Drug3D_2118.zip (contains e-Drug3D_2118.sdf) - Chemical Structures - The e-Drug3D collection in SDF format file -  one 3D conformer; ionization of carboxylic acid, phosphate, phosphonate, phosphonoamide, amidinium and guanidinium groups. The datablock contains the ID, name (INN), CAS number and Status.

e-Drug3D_2118_PK.csv - Pharmacokinetics - Column/field value is separated by a semicolon. It contains the e-Drug3D ID, INN (drug name), CAS number, year of approval, Status, is_or_has a metabolite, routes of administration, Volume of distribution (VD), Clearance (Cl), Plasma Protein Binding (PPB), Half-life (t1/2), Bioavailability (F), Cmax/Tmax, comment on solubility.

e-Drug3D_2118_PD.csv - Pharmacodynamics - Column/field value is separated by a semicolon. It contains the e-Drug3D ID, INN (drug name), CAS number, year of approval, Status, Primary target, ATC code(s), PDB codes and main list of drug targets.

e-Drug3D_2118_RD.csv - FDA Registration Data - Column/field value is separated by a semicolon. It contains the ID, name (INN), CAS number, First year of approval, Status, KNApSAcK or NPAtlas Id if natural product, all associated NDA numbers [FDA approval number, name of the label file in PDF format, company name, year of approval and commercial name of the drug] and the Indication/Therapeutic class information.

labels.tar.gz - The drug label files in PDF format (compressed directory). A label file is named with the NDA number. The NDA number is the approval number assigned by the FDA. A drug may possess several NDA numbers (see the above e-Drug3D-RD data set).
DOI: 10.15468/dl.qffz69
title: Occurrence Download

description: A dataset containing 3539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Barbronia weberi, Benhamia affinis, Dichogaster modiglianii, Branchiodrilus hortensis, Branchiura sowerbyi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3539 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039739-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqex9a
title: Occurrence Download

description: A dataset containing 6129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hyperiodrilus africanus, Lumbricus castaneus, Eudrilus eugeniae, Lumbricus friendi, Lumbricus meliboeus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6129 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039736-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgz6uz
title: Occurrence Download

description: A dataset containing 566 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphydryas editha quino (Behr, 1863)"
 ]
}

 The dataset includes 566 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0362622-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qx487a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Brucepattersonius igniventris Hershkovitz, 1998)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078751-230224095556074/datasets/export for details.
DOI: 10.15468/dl.akbr7t
title: Occurrence Download

description: A dataset containing 10865 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Anacardium amilcarianum Machado, Anacardium occidentale L., Anacardium curatellaefolium A.St.-Hil, Anacardium kuhlmannianum Machado, Anacardium microcarpum Ducke, Anacardium occidentale var. gardneri Engl., Anacardium othonianum Rizzini, Anacardium rondonianum Machado)"
 ]
}

 The dataset includes 10865 records from 427 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026921-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bemngj
title: Occurrence Download

description: A dataset containing 10902 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Phleum arenarium L."
 ]
}

 The dataset includes 10902 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078773-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jn9v9u
title: Occurrence Download

description: A dataset containing 2303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monochoria vaginalis (Burm.f.) C.Presl",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2303 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015774-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ua4zgj
title: Occurrence Download

description: A dataset containing 295 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Reithrodontomys chrysopsis Merriam, 1900, Reithrodontomys chrysotis Elliot, 1899)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 295 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078792-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.st2qg2
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acilepis kerrii (Craib) Bunwong, Chantar. & S.C.Keeley"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029118-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rsnss
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mico argentatus (Linnaeus, 1771))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 45 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078829-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3n3khz
title: Occurrence Download

description: A dataset containing 167821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Machine Observation",
 "Geometry POLYGON((-80.87867 -3.74059,-56.6022 -3.74059,-56.6022 13.50673,-80.87867 13.50673,-80.87867 -3.74059))",
 "HasGeospatialIssue is false",
 "Year 2002-2022"
 ]
}

 The dataset includes 167821 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067578-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhf8d6
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Larimichthys polyactis (Bleeker, 1877)"
 ]
}

 The dataset includes 387 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033028-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjwrtp
title: Occurrence Download

description: A dataset containing 3098 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Spodoptera frugiperda J.E.Smith, 1797"
 ]
}

 The dataset includes 3098 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008574-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.834564
title: Epiphytic orchid diversity (sum of all tree zones) found in trees sampled within a SW Ethiopian Afromontane rainforest
DOI: 10.1594/pangaea.834565
title: Epiphytic orchid diversity found in the shrub layer sampled within a SW Ethiopian Afromontane rainforest
DOI: 10.1594/pangaea.834566
title: Epiphytic orchid diversity in forest coffee plots in a SW Ethiopian Afromontane rainforest, split per tree zone (Z2 - Z5)

description: Managment: forest coffee
DOI: 10.1594/pangaea.834567
title: Epiphytic orchid diversity in semi-forest coffee plots in a SW Ethiopian Afromontane rainforest, split per tree zone (Z2 - Z5)

description: Managment: semi-forest coffee
DOI: 10.15468/dl.ddq9bg
title: Occurrence Download

description: A dataset containing 47973 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "OccurrenceStatus is Present",
 "TaxonKey is Anas acuta Linnaeus, 1758",
 "Year 2000-2023"
 ]
}

 The dataset includes 47973 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078758-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.810657
title: (Table S5) Mean cover of vascular plant species from 31 plots at the northeast side of the lake Patjujaure

description: Parameter comments: Plant Geographic Classes - AA:alpine/Arctic, B:boreal, N:north (but not boreal or alpine/Arctic) and O:other (cultural, south or south/east origin) based on distribution and origin sensu Hultén (1950). /Plant Life-Forms - G:graminoids=grass and sedges, F:forb, DS=deciduous shrub, WGS:winter-green shrub, DT: deciduous tree, and VC:vascular cryptogam.//PMK = The environmental monitoring programme; funded by the Swedish Environmental Protection Agency and data produced by the Department of Aquatic Science and Assessment at the Swedish University of Agricultural Sciences, SLU. http://www.ma.slu.se/. Accessed 14 Nov 2008.
DOI: 10.1594/pangaea.920599
title: Plant species richness and cover in pre-Alpine grasslands of southern Germany

description: # = NA
DOI: 10.15468/dl.9e4ehh
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Vaccinium uliginosum L."
 ]
}

 The dataset includes 220 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258338-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.964538
title: Conventional XRF data from marine sediment core E-8X, Danish North Sea, covering the Paleocene-Eocene boundary

description: The data set contains raw datafiles from PANalytical Axios mAX sequential, fully automatic wavelength-dispersive X-ray fluorescence spectrometer. The XRF data was collected in 2016 by Malvern Panalytical on 53 samples from core E-8X, with a sample spacing of ~10 cm across 6 m total core length. The attached file includes a raw data compilation of relative abundances of various oxides, and are utilised as geochemical proxies to decribe bottom water redox changes in the central North Sea during the Paleocene-Eocene Thermal Maximum.
DOI: 10.15468/dl.ud6hxg
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus pulcher Korovin"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078802-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbx3e7
title: Occurrence Download

description: A dataset containing 303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Meriones unguiculatus (Milne-Edwards, 1867)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 303 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0257824-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.964543
title: Portable XRF data from marine sediment core E-8X, Danish North Sea, covering the Paleocene-Eocene boundary

description: The data set contains raw datafiles from an Olympus DELTA Professional X-ray portable spectrometer. The portable XRF data was collected in 2019 on 621 samples from core E-8X, with a sample spacing of ~1 cm across 6 m total core length. The attached file includes a raw data compilation of relative abundances of various oxides, and are utilised as geochemical proxies to decribe bottom water redox changes in the central North Sea during the Paleocene-Eocene Thermal Maximum.
description: #0 stands for
DOI: 10.1594/pangaea.964646
title: Total sulfur data from marine sediment core E-8X, Danish North Sea, covering the Paleocene-Eocene boundary

description: The data set contains raw datafiles of total sulfur concentrations from a LECO CS230 analyser at Newcastle University. The total sulfur analysis was carried out in duplicates in 2016 on 25 samples from core E-8X. Certified calibration carbon/S standards (0.815/0.0032%, respectively) supplied by Leco UK Ltd, along with analytical blanks were measured every 20 and 25 analytical samples, respectively. The attached file includes a raw data compilation of absolute abundances of sulfur, and are utilised as geochemical proxies to decribe bottom water redox changes in the central North Sea during the Paleocene-Eocene Thermal Maximum.
DOI: 10.15468/dl.bnaw9b
title: Occurrence Download

description: A dataset containing 1355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cebus capucinus (Linnaeus, 1758))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1355 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078783-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zb95m9
title: Occurrence Download

description: A dataset containing 318317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DEU.3_1",
 "TaxonKey is Aves",
 "Year 2013-2023"
 ]
}

 The dataset includes 318317 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008859-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hwrfy4
title: Occurrence Download

description: A dataset containing 3425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is one of (International Barcode of Life project (iBOL), Centre for Biodiversity Genomics - Canadian Specimens)",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (b3bf3a83-1f68-4541-a03f-330d30d567f5, 296fe5cf-ae43-4212-8f77-293e807d0d5a)",
 "TaxonKey is Fungi",
 "Year 2000-2023"
 ]
}

 The dataset includes 3425 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111312-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kr5geb
title: Occurrence Download

description: A dataset listing the 6 species recorded in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Psarisomus dalhousiae (Jameson, 1835)"
 ]
}

 The dataset's 6 records were derived from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0257843-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yy5btb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Sangabasis cahilogi Villanueva & Dow, 2014)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010827-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5tp2f
title: Occurrence Download

description: A dataset containing 1368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dryopteris remota (A.Braun ex Döll) Druce, Dryopteris villarsii Woynar ex Schinz & Thell., Dufourea alpina Morawitz, 1865)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 1368 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0317435-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcs2ps
title: Occurrence Download

description: A dataset containing 29002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Silene acaulis (L.) Jacq."
 ]
}

 The dataset includes 29002 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078811-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfqchb
title: Occurrence Download

description: A dataset containing 126223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny",
 "Country is Australia"
 ]
}

 The dataset includes 126223 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111297-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uuf4d3
title: Occurrence Download

description: A dataset containing 1014 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lophophora williamsii (Lem. ex Salm-Dyck) J.M.Coult."
 ]
}

 The dataset includes 1014 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083312-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8285758
title: WallStreetBets 2022
DOI: 10.15468/dl.gcztp8
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Odorrana graminea (Boulenger, 1900)"
 ]
}

 The dataset includes 31 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129660-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.