cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nd2wx7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cousinia flavispina Franch."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149525-230224095556074/datasets/export for details.
DOI: 10.15468/dl.2b1yxy
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apareiodon affinis (Steindachner, 1879)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 65 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003855-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8ng3c
title: Occurrence Download

description: A dataset containing 2585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus azarolus L.",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1000",
 "CoordinateUncertaintyInMeters is less than 1000"
 ]
}

 The dataset includes 2585 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149528-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ejj64x
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lathyrus pastorei (Burkart) Rossow"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149537-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4thvv
title: Occurrence Download

description: A dataset containing 1687282 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Panama"
 ]
}

 The dataset includes 1687282 records from 788 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003855-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.17252.59528
title: expression-systems-double-32
DOI: 10.15468/tvvdx5
title: Stagonosporopsis rhizophilae sp. nov. (Didymellaceae, Pleosporales), a new rhizospheric soil fungus associated with Populus deltoides Marsh

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wei, Huanshen, He, Xinghua, Riccardo, Baroncelli, Yang, Yuzhan, Yuan, Zhilin (2021): Stagonosporopsis rhizophilae sp. nov. (Didymellaceae, Pleosporales), a new rhizospheric soil fungus associated with Populus deltoides Marsh. Phytotaxa 491 (1): 23-34, DOI: 10.11646/phytotaxa.491.1.3, URL: http://dx.doi.org/10.11646/phytotaxa.491.1.3AbstractIn this work we describe Stagonosporopsis rhizophilae sp. nov. (Didymellaceae, Pleosporales, Ascomycota), a new species isolated from the rhizospheric soil of Populus deltoides Marsh. Phylogenetic analyses based on combined multilocus sequences of internal transcribed spacers (ITS: ITS1, 5.8S, ITS2), and partial sequences of the large subunit 28S nrDNA region (LSU), β-tubulin (TUB), and RNA Polymerase II second-largest subunit (RPB2) clearly place this species within the genus Stagonosporopsis but distinguishes it from all known and closely related species such as S. nemophilae. Stagonosporopsis rhizophilae sp. nov. can also be differentiated from S. nemophilae by morphological characters and by the negative response of the NaOH spot test for the production of metabolite E.
DOI: 10.5281/zenodo.15123982
title: IRAP-BH
DOI: 10.5281/zenodo.15123983
title: IRAP-BH
DOI: 10.57760/sciencedb.28640
title: Observation Dataset of Herbaceous Phenology under the forest of Changbai Mountain
title: 长白山林下草本物候观测数据集

description: The dataset includes phenological observations of herbaceous plants in the Changbai Mountain region of China. It includes 5 sample plots in total. Including herbaceous plants under the original broad-leaved Korean pine forest (2, one each in Erdaobaihe Town and Lushuihe Town), herbaceous plants under the secondary poplar birch forest (1, Erdaobaihe Town), herbaceous plants under the larch forest (1, Lushuihe Town), and herbaceous plants under the meteorological observation field (without tree cover) (1, Erdaobaihe Town). This data set is from the camera used by Dr. Gao Yuan of the Shenyang Institute of Applied Ecology, Chinese Academy of Sciences, for snow observation (therefore, snow ruler is included in the picture). After his doctoral graduation, the camera is still running. After being maintained by Dr. Yang Junhui and Dr. Zhang Yuan, it was finally shared on the platform. Related research on phenology is available. 
description: The dataset includes phenological observations of herbaceous plants in the Changbai Mountain region of China. It includes 5 sample plots in total. Including herbaceous plants under the original broad-leaved Korean pine forest (2, one each in Erdaobaihe Town and Lushuihe Town), herbaceous plants under the secondary poplar birch forest (1, Erdaobaihe Town), herbaceous plants under the larch forest (1, Lushuihe Town), and herbaceous plants under the meteorological observation field (without tree cover) (1, Erdaobaihe Town). This data set is from the camera used by Dr. Gao Yuan of the Shenyang Institute of Applied Ecology, Chinese Academy of Sciences, for snow observation (therefore, snow ruler is included in the picture). After his doctoral graduation, the camera is still running. After being maintained by Dr. Yang Junhui and Dr. Zhang Yuan, it was finally shared on the platform. Related research on phenology is available.
DOI: 10.5281/zenodo.17198149
title: COMFI (no videos)

description: COMFI (human-robot Collaboration Oriented Markerless For Industry) is a multimodal dataset designed to advance markerless motion capture, ergonomics, and Human–Robot Collaboration (HRC) in  factory settings. COMFI contains 4.5 hours of synchronized and spatially co-registered streams acquired from 18 participants performing 24 tasks that span everyday movements (e.g., walking, sit-to-stand) and ergonomically demanding industrial actions (lifting, overhead work, bolting, sanding, welding), with the addition of two HRC scenarios in which a Franka Emika Panda is guided by the human while holding a tool. For a total of 86.5Go of data, it includes: calibrated multi-view RGB videos (40Hz), optical motion capture markers and joint centers positions, as well as joint angles (100 and 40Hz), 6D ground-reaction forces (1000 and 40Hz), and robot telemetry (200 and 40Hz). Camera intrinsics/extrinsics, global triggers, and software-barrier synchronization for webcams are distributed, along with participant-scaled human Universal Robot Description Files that adhere to International Society of Biomechancis conventions, enabling kinematics, dynamics, and torque estimation. Videos are anonymized while preserving facial cues useful to markerless pipelines. Accompanying code supports loading, calibration, and visualization. COMFI enables rigorous benchmarking of markerless pose estimation under occlusion and clutter against reference systems, allowing to extend current state-of-the-art algorithms to complex industrial scenarios. COMFI is expected to catalyze reproducible, cross-disciplinary research toward safer, more ergonomic HRC.The current upload featurnes no videos, they can be found in two others upload COMFI_videos1 and COMFI_videos2
DOI: 10.15468/dl.psys3u
title: Occurrence Download

description: A dataset containing 1431892 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phoenicurus phoenicurus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1431892 records from 2181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014845-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u92utw
title: Occurrence Download

description: A dataset containing 45446 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Lyonia Nutt."
 ]
}

 The dataset includes 45446 records from 383 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057371-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.26353858
title: Supporting data for "Study the therapeutic potential of transcutaneous auricular vagus nerve stimulation (TaVNS) for Alzheimer’s Disease (AD) in 5xFAD mouse model".

description: This is the supporting data for "Study the therapeutic potential of transcutaneous auricular vagus nerve stimulation (TaVNS) for Alzheimer’s Disease (AD) in 5xFAD mouse model". This study studied the therapeutic potential of TaVNS in AD, and the therapeutic effects were demonstrated in 5xFAD mouse mode, an AD rodent model.My study consisted of 3 studies: study 1 was to understand the pathologies displayed in the 5xFAD model; study 2 was to find out the optimal stimulation approach of TaVNS and see how it can affect the brain to achieve beneficial results. Study 3 was to validate the mechanism found in study 2. These studies include data from behavioral tests, immunohistochemistry studies, immunofluorescence studies, mass spectrometry studies, and gene expression RT-PCR studies. The dataset has included all the numerical raw and clean data of these tests and the statistical analysis. Overall, this study aim to test the hypothesis that TaVNS can be a therapeutic option for AD patients and the action mechanism is serotonin-dependent.<br><br>
DOI: 10.25442/hku.26353858.v1
title: Supporting data for "Study the therapeutic potential of transcutaneous auricular vagus nerve stimulation (TaVNS) for Alzheimer’s Disease (AD) in 5xFAD mouse model".

description: This is the supporting data for "Study the therapeutic potential of transcutaneous auricular vagus nerve stimulation (TaVNS) for Alzheimer’s Disease (AD) in 5xFAD mouse model". This study studied the therapeutic potential of TaVNS in AD, and the therapeutic effects were demonstrated in 5xFAD mouse mode, an AD rodent model.My study consisted of 3 studies: study 1 was to understand the pathologies displayed in the 5xFAD model; study 2 was to find out the optimal stimulation approach of TaVNS and see how it can affect the brain to achieve beneficial results. Study 3 was to validate the mechanism found in study 2. These studies include data from behavioral tests, immunohistochemistry studies, immunofluorescence studies, mass spectrometry studies, and gene expression RT-PCR studies. The dataset has included all the numerical raw and clean data of these tests and the statistical analysis. Overall, this study aim to test the hypothesis that TaVNS can be a therapeutic option for AD patients and the action mechanism is serotonin-dependent.<br><br>
DOI: 10.15468/dl.w56kk3
title: Occurrence Download

description: A dataset containing 728 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Balsamorhiza macrophylla Nutt."
 ]
}

 The dataset includes 728 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057373-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.26318959
title: Supporting data for "Immovably flexible: Spatial variation in emersion stress responses by <i>Saccostrea cuccullata</i>"

description: This item includes all measurements of the physiological and behavioural responses of <i>Saccostrea cuccullata </i>when they are exposed to emersion in summer; a hot and dry period where the oysters were exposed to direct solar radiation due to the receding of tides. Chapter 2 investigates the thermal environment and physical characteristics between the three study sites; at three vertical heights within the oyster band, and how these different thermal regimes may impact the survival and reproductive development of the oysters. Chapter 3 quantifies the thermal stress and desiccation that oysters experience during summer emersion periods by measuring the change in haemolymph oxygen tension, osmolality of bodily fluid (i.e. haemolymph and extra-pallial fluid) and body water content throughout the emersion period in the field and in a laboratory simulated emersion.Chapter 4 measures the thermal tolerance, cellular heat shock response (i.e. relative gene expression of hsp70) and associated energetic trade-offs in the oysters at different sites and shore heights. This chapter also investigate the potential plasticity in cellular heat shock response of oyster by comparing the cellular heat shock response between field fresh and common garden acclimated oyster.Chapter 5 explores potential behavioural responses exhibited by oysters by measuring their gaping behaviour during different seasons and tidal conditions.
DOI: 10.25442/hku.26318959.v1
title: Supporting data for "Immovably flexible: Spatial variation in emersion stress responses by <i>Saccostrea cuccullata</i>"

description: This item includes all measurements of the physiological and behavioural responses of <i>Saccostrea cuccullata </i>when they are exposed to emersion in summer; a hot and dry period where the oysters were exposed to direct solar radiation due to the receding of tides. Chapter 2 investigates the thermal environment and physical characteristics between the three study sites; at three vertical heights within the oyster band, and how these different thermal regimes may impact the survival and reproductive development of the oysters. Chapter 3 quantifies the thermal stress and desiccation that oysters experience during summer emersion periods by measuring the change in haemolymph oxygen tension, osmolality of bodily fluid (i.e. haemolymph and extra-pallial fluid) and body water content throughout the emersion period in the field and in a laboratory simulated emersion.Chapter 4 measures the thermal tolerance, cellular heat shock response (i.e. relative gene expression of hsp70) and associated energetic trade-offs in the oysters at different sites and shore heights. This chapter also investigate the potential plasticity in cellular heat shock response of oyster by comparing the cellular heat shock response between field fresh and common garden acclimated oyster.Chapter 5 explores potential behavioural responses exhibited by oysters by measuring their gaping behaviour during different seasons and tidal conditions.
DOI: 10.25442/hku.26309854
title: Supporting data for thesis “Therapeutic Effects of Ganoderma and Its Active Ingredients on Microglial Activation and Polarization in Multiple Sclerosis Treatment”

description: Supporting data for thesis “Therapeutic Effects of Ganoderma and Its Active Ingredients on Microglial Activation and Polarization in Multiple Sclerosis Treatment”Multiple Sclerosis (MS), a neurodegenerative disease infecting the central nervous system (CNS), without an effective therapeutic strategy currently. Seeking novel therapeutic strategies for MS is crucial due to its high prevalence and high economic burden. This study investigates the potential of Ganoderma Lucidum Spore Lehuo(GLS) powder, nature product derived from Ganoderma, as a therapeutic agent for MS, with no prior studies examined GLS powder's efficacy in MS treatment. The study used an experimental autoimmune encephalomyelitis (EAE) mouse model to test the hypothesis that GLS could mitigate MS by inhibiting microglial activation and promoting a shift towards an anti-inflammatory M2-like state.The results demonstrated that GLS treatment effectively ameliorated the severity of the disease, and reduced the inflammatory infiltration/demyelination, microglial activation and M2-like polarization in the spinal cord. Meanwhile, GLS could reduce the microglial RNS releasement via suppressing the nuclear factor-κB (NF-κB) signaling pathway in the inflammatory-related BV2 cell model. The in vitro experiments on microglia and neuronal cells also exert protective effects on neurons. Taken together, we conclude that GLS has therapeutic values for treating EAE/MS and decreases the disease severity via attenuating the activation and polarization of microglia to have anti-inflammatory, anti-oxidative effects and inhibiting microglial-derived neuronal death. Further investigation could lead to the development of a promising novel therapeutic agent for Multiple Sclerosis.
DOI: 10.15468/dl.xvnqss
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.284161 -33.139542, 148.284161 -33.141788, 148.288653 -33.141788, 148.288653 -33.139542, 148.284161 -33.139542)), ((148.288653 -33.141788, 148.288653 -33.144034, 148.290899 -33.144034, 148.290899 -33.141788, 148.288653 -33.141788)), ((148.290899 -33.144034, 148.290899 -33.148525, 148.293145 -33.148525, 148.293145 -33.144034, 148.290899 -33.144034)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057374-240626123714530/datasets/export for details.
DOI: 10.25442/hku.26198189
title: Supporting data for “Formation, isomerization and dissociation of aromatic-containing peptide radical cations”

description: All the mass spectrometry spectra are acuqired by the LTQ XL™ Linear Ion Trap Mass SpectrometerThe sample are radical cation peptide generated by the dissociation of metal-ligand-pepitdeThe mass spectrometry data of radical cations of peptides GGY, YGW, G(2D)FG, GGW, and GFG has been crucial in supporting the discussions outlined in various chapters of the thesis. The CID spectra of the radical cation of peptide GGW supports the Chapter 3.The CID spectra of radical cation of peptide YGW supports the Chapter 4.The CID spectra of radical cations of peptides G(2D)FG, and GFG supports the Chapter 5 and the CID spectra of radical cations of peptides GGY supports the Chapter 6.<br>
DOI: 10.25442/hku.26198189.v1
title: Supporting data for “Formation, isomerization and dissociation of aromatic-containing peptide radical cations”

description: All the mass spectrometry spectra are acuqired by the LTQ XL™ Linear Ion Trap Mass SpectrometerThe sample are radical cation peptide generated by the dissociation of metal-ligand-pepitdeThe mass spectrometry data of radical cations of peptides GGY, YGW, G(2D)FG, GGW, and GFG has been crucial in supporting the discussions outlined in various chapters of the thesis. The CID spectra of the radical cation of peptide GGW supports the Chapter 3.The CID spectra of radical cation of peptide YGW supports the Chapter 4.The CID spectra of radical cations of peptides G(2D)FG, and GFG supports the Chapter 5 and the CID spectra of radical cations of peptides GGY supports the Chapter 6.<br>
DOI: 10.25442/hku.26200217
title: Supporting data for "A Hybrid-based Music Recommendation with Contextual Information"

description: <br>AuthorRuilun Liu (laualan@connect.hku.hk)The University of Hong Kong<br>IntroductionThis dataset is the supporting data for the research of "A Hybrid-based Music Recommendation with Contextual Information". A total of 213 playlists were gathered from the participants throughout a user experiment. Music features of the music involved in the playlists were obtained from the Spotify API, encompassing features of metadata, high- and low-audio features, artist information, and lyrics embeddings, Directory of Files.├─README├─1. music_features.csv└─2. user_created_playlists.csvData Description1. music_features.csv: Spotify ID with features of metadata, high- and low-level audio features, artist, and lyric embeddings.2. user_created_playlists.csv: A number of 213 playlists created by participants within the two-month user experiment, including columns of participant ID, playlist ID, playlist name, and a list of Spotify IDs.<br>
DOI: 10.25442/hku.26200217.v1
title: Supporting data for "A Hybrid-based Music Recommendation with Contextual Information"

description: <br>AuthorRuilun Liu (laualan@connect.hku.hk)The University of Hong Kong<br>IntroductionThis dataset is the supporting data for the research of "A Hybrid-based Music Recommendation with Contextual Information". A total of 213 playlists were gathered from the participants throughout a user experiment. Music features of the music involved in the playlists were obtained from the Spotify API, encompassing features of metadata, high- and low-audio features, artist information, and lyrics embeddings, Directory of Files.├─README├─1. music_features.csv└─2. user_created_playlists.csvData Description1. music_features.csv: Spotify ID with features of metadata, high- and low-level audio features, artist, and lyric embeddings.2. user_created_playlists.csv: A number of 213 playlists created by participants within the two-month user experiment, including columns of participant ID, playlist ID, playlist name, and a list of Spotify IDs.<br>
DOI: 10.25442/hku.26183069
title: Supporting data for “<b>Quantitative Analysis of the Human Gut Microbiome and its Implication on Health and Disease</b>”.

description: The data is for the thesis chapter titled "MetaQuad," and the relevant materials for the Metaquad paper. "Sheng Xu, Daniel C Morgan, Gordon Qian, Yuanhua Huang, Joshua W K Ho, MetaQuad: shared informative variants discovery in metagenomic samples, <i>Bioinformatics Advances</i>, Volume 4, Issue 1, 2024, vbae030, https://doi.org/10.1093/bioadv/vbae030"MetaQuad is a tool designed to detect <b>shared informative variants</b> in a population of shotgun metagenomic data. It uses a density clustering model to assess the informative variants among background noise. MetaQuad is an extension of MQuad, specifically tailored to support shotgun metagenomic data.The detailed introduction and usage can be found in the MetaQuad paper and GitHub page: https://github.com/holab-hku/MetaQuad<br><br><br>
DOI: 10.25442/hku.26183069.v1
title: Supporting data for “<b>Quantitative Analysis of the Human Gut Microbiome and its Implication on Health and Disease</b>”.

description: The data is for the thesis chapter titled "MetaQuad," and the relevant materials for the Metaquad paper. "Sheng Xu, Daniel C Morgan, Gordon Qian, Yuanhua Huang, Joshua W K Ho, MetaQuad: shared informative variants discovery in metagenomic samples, <i>Bioinformatics Advances</i>, Volume 4, Issue 1, 2024, vbae030, https://doi.org/10.1093/bioadv/vbae030"MetaQuad is a tool designed to detect <b>shared informative variants</b> in a population of shotgun metagenomic data. It uses a density clustering model to assess the informative variants among background noise. MetaQuad is an extension of MQuad, specifically tailored to support shotgun metagenomic data.The detailed introduction and usage can be found in the MetaQuad paper and GitHub page: https://github.com/holab-hku/MetaQuad<br><br><br>
DOI: 10.15468/dl.pupjcz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.553657 -33.139542, 148.553657 -33.141788, 148.551412 -33.141788, 148.551412 -33.148525, 148.553657 -33.148525, 148.553657 -33.150771, 148.558149 -33.150771, 148.558149 -33.139542, 148.553657 -33.139542))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057375-240626123714530/datasets/export for details.