cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16619773.v46
title: MS2 data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: MS2 data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation": <br> - raw MS2 Live imaging movies: 123 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column). <br> - data obtained from image analysis: 123 '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each. <br> - numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.6084/m9.figshare.16619773.v45
title: MS2 data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: MS2 data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation": <br> - raw MS2 Live imaging movies: 123 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column). <br> - data obtained from image analysis: 123 '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each. <br> - numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.6084/m9.figshare.19749961
title: Processed extended meta-analysis of hydraulic functional traits

description: This file includes the processed data from our extended meta-analysis of tropical tree and liana hydraulic functional traits. Other functionals traits were included if they were reported in the publications meeting the criteria of our extended meta-analysis for reporting hydraulic functional traits. Columns are as follows: Growth.form: Either tree or liana AccSpeciesName: Accepted species name from the TRY database HV (cm/cm2): Huber value in cm/cm<sup>2</sup> <sup></sup>Al/As (m2/cm2): Leaf area:sapwood area ratio in m<sup>2</sup>/cm<sup>2</sup> HV (10^4, m2/m2): Huber value in 10<sup>4</sup> m<sup>2</sup>/<sup></sup>m<sup>2</sup> N (g/kg): Mass-based leaf nitrogen content in g/kg WD (g/cm3): Wood density in g/cm<sup>3</sup> Dv (um): Vessel diameter in um Denisty (mm-2): Vessel density in mm<sup>-2</sup> Transpiration (mmol/m2/s): Transpiration rate in mmol/m<sup>2</sup>/s Annual psi min: Annual minimum leaf water potential in MPa Midday psi leaf (Mpa): Midday leaf water potential in MPa WUE (umol/mol): Water use efficiency in umol/mol Gs (mol/m2/s): Stomatal conductance in mol/m<sup>2</sup>/s Aarea (umol/m2/s): Area-based photosynthetic rate in umol/m<sup>2</sup>/s LDMC (g/g): Leaf dry matter content in g/g SLA (cm2/g): Specific leaf area in cm<sup>2</sup>/g MVL (cm): Maximum vessel length in cm MOR (N/mm2): Modulus of rupture in N/mm<sup>2</sup> BVD (um): 20 biggest vessel lumen diameter in um MVD (um): Mean vessel lumen diameter in um WLR (um/um): Wall-lumen ratio in um/um Vessel%: Vessel percentage in % Parenchyma%: Parenchyma percentage in % Fiber%: Fiber percentage in % Kl (mmol/m/s/Mpa): Maximum leaf-specific hydraulic conductivity in mmol/m/s/MPa Dh (um): Hydraullically weighted vessel diameter in um PLC (%): Percent loss of conductivity in % Midday K (kg/m/s/Mpa): Midday stem sapwood-specific conductivity in kg/m/s/MPa Osmotic potential at full turgor (Mpa): Osmotic potential at full turgor in MPa Leaf water potential at turgor loss point (Mpa): Leaf water potential at turgor loss point in MPa Bulk modulus of elasticity (Mpa): Bulk modulus of elasticity in MPa Absolute capacitance (mol/m2/Mpa): Absolute capacitance in mol/m<sup>2</sup>/MPa K: Stem-specific maximum hydraulic conductivity (units variable) Units_K: Units associated with value in the same row of the column K P50: Pressure at which 50% of hydraulic function is lost in MPa Units_P50: Units associated with value in the same row of the column P50 (always MPa) Slope: Slope of the PLC curve in %/MPa Units_Slope: Units associated with value in the same row of the column Slope (always %/MPa) Source: Abbreviated citations for manuscripts associated with the data. See Supplementary Table 5 of the associated manuscript for complete citations. Note that citations of all the references listed in Supplementary Table 5 of the associated manuscript (Willson et al.) should accompany any use of this dataset.
DOI: 10.6084/m9.figshare.19749874
title: Processed TRY dataset

description: Final dataset used to produce Supplementary Figs. 1, 6, and 7 and Supplementary Tables 3 and 4. Columns are as follows: Species.ID: Unique ID number given to each species in the TRY database Growth.form: Either tree or liana Leaf.lifespan..m.: Leaf lifespan in months SLA..mm2.mg.: Specific leaf area in mm<sup>2</sup>/mg Narea..g.m2.: Area-based leaf nitrogen content in g/m<sup>2</sup> Aarea..mmol.CO2.m2.s: Area-based photosynthetic rate in mmol CO<sub>2</sub>/m<sup>2</sup>/s SSD..g.cm3.: Stem specific density in g/cm<sup>3</sup> SSC..kg.m.s.MPa.: Sapwood specific conductivity in kg/m/s/MPa SRL..m.g.: Specific root length in m/g FRD..mm.: Fine root diameter in mm CRD..mm.: Course root diameter in mm MC....: Mycorrhizal colonization in % RHC..cm3.cm.s.MPa.10.6.: Root hydraulic conductivity in cm<sup>3</sup>/cm/s/MPa * 10<sup>6</sup> WVD..um.: Stem conduit diameter in um Dens..1.mm.2.: Stem conduit density in mm<sup>-2</sup> Height..m.: Plant height in m LA..cm.2.: Leaf area in cm<sup>2</sup> SM..mg.: Seed mass in mg WVEL..um.: Wood vessel element length in um RRD..m.: Rooting depth in m P50..MPa.: Pressure at which 50% of xylem function is lost (P<sub>50</sub>) in MPa Nmass..mg.g.: Mass-based leaf nitrogen content in mg/g Pmass..mg.g.: Mass-based leaf phosphorus content in mg/g Crown.depth..m.: Crown depth in m Name: Species name (standard name in TRY database) All cells are averages of all available observations for a given trait and species. Because the values are averages, there are no publications associated with the entries in this processed dataset. The raw data from TRY used to produce this data file are available in TRY.zip. The raw text files include the publications associated with the original observations.
DOI: 10.7298/b9ws-jj47
title: Data from: The overlooked role of the stratosphere under a solar constant reduction
DOI: 10.6084/m9.figshare.19750303
title: Supplementary Material – Vascular epiphytes of the Serra do Relógio: the surprising richness of the seasonal forests in the mountains of Minas Gerais, Southeastern Brazil

description: <strong>Table S1 – </strong> Vascular epiphytes recorded in the Serra do Relógio, Zona da Mata, Minas Gerais, Southeastern Brazil. <br> <strong>Table S2 –</strong> Comparison among studies performed in the Brazilian Atlantic Forest. The selected studies present checklists with more than 100 species and forest vegetation composed of Dense Ombrophilous Forest (DOF), Mixed Ombrophilous Forest (MOF) and/or Seasonal Semi-deciduous Forest (SSF). <br> This Supplementary Material is part of the Original Paper &lt;10.1590/2175-7860202273067&gt;
DOI: 10.6084/m9.figshare.19750303.v1
title: Supplementary Material – Vascular epiphytes of the Serra do Relógio: the surprising richness of the seasonal forests in the mountains of Minas Gerais, Southeastern Brazil

description: <strong>Table S1 – </strong> Vascular epiphytes recorded in the Serra do Relógio, Zona da Mata, Minas Gerais, Southeastern Brazil. <br> <strong>Table S2 –</strong> Comparison among studies performed in the Brazilian Atlantic Forest. The selected studies present checklists with more than 100 species and forest vegetation composed of Dense Ombrophilous Forest (DOF), Mixed Ombrophilous Forest (MOF) and/or Seasonal Semi-deciduous Forest (SSF). <br> This Supplementary Material is part of the Original Paper &lt;10.1590/2175-7860202273067&gt;
DOI: 10.6084/m9.figshare.19750330
title: Datasets of experiments on the sediment transport along pool-riffle unit

description: The data repository includes the data of bed surface grain size, grain size of sediment mixture, sediment transport, bedload texture, flow, and particle dispersions.
DOI: 10.5281/zenodo.6540508
title: Characterizing Subjects Exposed to Humidifier Disinfectants Using Computed Tomography-based Latent Traits: A Deep Learning Approach

description: Around nine million people had been exposed to toxic humidifier disinfectants (HDs) in Korea. HD-exposure may lead to HD-associated lung injuries (HDLI). However, many people who claimed HD exposure were not diagnosed of HDLI but still felt discomfort possibly due to the unknown effects of HD. Therefore, this study examined HD-exposed subjects with normal appearing lungs as well as unexposed subjects in clusters (subgroups) with distinct characteristics classified by deep-learning-derived computed-tomography (CT)-based tissue-pattern latent traits. Among the major clusters, cluster 0 (C0) and cluster 5 (C5) were dominated by HD-exposed and unexposed subjects, respectively. C0 was characterized by features attributable to lung inflammation or fibrosis compared with C5. The computational fluid and particle dynamics (CFPD) analysis suggested that the smaller airway sizes observed in the C0 subjects led to greater airway resistance and particle deposition in the airways. Accordingly, women appeared more vulnerable to HD-associated lung abnormality than men.
DOI: 10.5281/zenodo.6540507
title: Characterizing Subjects Exposed to Humidifier Disinfectants Using Computed Tomography-based Latent Traits: A Deep Learning Approach

description: Around nine million people had been exposed to toxic humidifier disinfectants (HDs) in Korea. HD-exposure may lead to HD-associated lung injuries (HDLI). However, many people who claimed HD exposure were not diagnosed of HDLI but still felt discomfort possibly due to the unknown effects of HD. Therefore, this study examined HD-exposed subjects with normal appearing lungs as well as unexposed subjects in clusters (subgroups) with distinct characteristics classified by deep-learning-derived computed-tomography (CT)-based tissue-pattern latent traits. Among the major clusters, cluster 0 (C0) and cluster 5 (C5) were dominated by HD-exposed and unexposed subjects, respectively. C0 was characterized by features attributable to lung inflammation or fibrosis compared with C5. The computational fluid and particle dynamics (CFPD) analysis suggested that the smaller airway sizes observed in the C0 subjects led to greater airway resistance and particle deposition in the airways. Accordingly, women appeared more vulnerable to HD-associated lung abnormality than men.
DOI: 10.25345/c5m61bt5v
title: MassIVE MSV000089459 - Zarrinpar_Amulya_IHCair_BSH_mouse_fecal_QE
title: Untargeted LC-MS/MS data from fecal samples of 4 different groups of mice: BSH+/air, BSH-/air, BSH+/hypoxia, BSH-/hypoxia.
DOI: 10.25345/c5gf0n114
title: MassIVE MSV000089460 - Secretion peptidomics of human inducible neurons (iN) in schizophrenia and control subjects following KCl stimulation
title: Peptidomics analyses of peptides released following KCl stimulation from human schizophrenia and control inducible neurons (iN)
DOI: 10.5517/ccdc.csd.cc2bdt0l
title: CCDC 2157259: Experimental Crystal Structure Determination

description: Related Article: Mostafa A. El-Naggar, Morsy A.M. Abu-Youssef, Saied M. Soliman, Matti Haukka, Abdullah Mohammed Al-Majid, Assem Barakat, Ahmed M.A. Badr|2022|J.Mol.Struct.|1264|133210|doi:10.1016/j.molstruc.2022.133210
DOI: 10.5517/ccdc.csd.cc2bdt1m
title: CCDC 2157260: Experimental Crystal Structure Determination

description: Related Article: Mostafa A. El-Naggar, Morsy A.M. Abu-Youssef, Saied M. Soliman, Matti Haukka, Abdullah Mohammed Al-Majid, Assem Barakat, Ahmed M.A. Badr|2022|J.Mol.Struct.|1264|133210|doi:10.1016/j.molstruc.2022.133210
DOI: 10.5067/gpm/atms/noaa20/gprof/2a/07
title: GPM ATMS on NOAA-20 (GPROF) Radiometer Precipitation Profiling L2A 1.5 hours 17 km V07
DOI: 10.5067/gpm/atms/npp/gprof/2a/07
title: GPM ATMS on SUOMI-NPP (GPROF) Radiometer Precipitation Profiling L2 1.5 hours 16 km V07
DOI: 10.26165/juelich-data/brxhz9
title: Dynamic Synchronization Toolbox

description: Implementation of generalized scripts as they were used for analysis of: Stimulus transformation into motor action: dynamic graph analysis reveals a posterior-to-anterior shift in brain network communication of older subjects", https://doi.org/10.26165/JUELICH-DATA/T1PKNZ, Jülich DATA, V1
DOI: 10.17608/k6.auckland.19680933
title: Data from: An RGB-D Framework for Capturing Soft-sediment Microtopography

description: Details of the experiments are presented in "An RGB-D Framework for Capturing Soft-sediment Microtopography" by Azhar, M., Hillman, J. R , Gee, T. , Schenone, S., van der Mark, W. , Thrush, S. F., Delmas, P. <br> This repository contains: Depth images obtained from the Asus Xtion device from study sites (n=82). Depth images from noise test on planar surface (n=10). <br>
DOI: 10.17608/k6.auckland.19680933.v1
title: Data from: An RGB-D Framework for Capturing Soft-sediment Microtopography

description: Details of the experiments are presented in "An RGB-D Framework for Capturing Soft-sediment Microtopography" by Azhar, M., Hillman, J. R , Gee, T. , Schenone, S., van der Mark, W. , Thrush, S. F., Delmas, P. <br> This repository contains: Depth images obtained from the Asus Xtion device from study sites (n=82). Depth images from noise test on planar surface (n=10). <br>
DOI: 10.6084/m9.figshare.19750366
title: SNP corrected genomes, and expression data for B96, B75 and B73 under control and Tetranychus urticae (two-spotted spider mite) herbivory conditions

description: Our study examined transcriptional responses of maize (<em>Zea mays</em>) to the generalist herbivore <em>Tetranychus urticae</em> (the two-spotted spider mite). Spider mite resistant lines B96 and B75 were used, along with susceptible B73. The data associated with this figshare release contain input or output files for the bioinformatics workflow released on the following Github site: https://github.com/rmclarklab/Zmays_cis_trans. The project is described in a manuscript titled “Concerted <em>cis</em> and <em>trans</em> effects underpin heightened defense gene expression in multi-herbivore resistant maize lines” by Meiyuan Ji, Huyen Bui, Ricardo A. Ramirez, and Richard M. Clark. Provided are SNP-corrected genomes for B96 and B75 and associated gene expresssion data. The large files are provided in a compressed tar archive, and a README file (README.txt included in the archive) describes each file in the archive. As described on the Github site and in the manuscript, associated DNA-seq and RNA-seq read data are publicly available from the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under PRJNA771871 and PRJNA478866, respectively.
DOI: 10.6084/m9.figshare.19750366.v1
title: SNP corrected genomes, and expression data for B96, B75 and B73 under control and Tetranychus urticae (two-spotted spider mite) herbivory conditions

description: Our study examined transcriptional responses of maize (<em>Zea mays</em>) to the generalist herbivore <em>Tetranychus urticae</em> (the two-spotted spider mite). Spider mite resistant lines B96 and B75 were used, along with susceptible B73. The data associated with this figshare release contain input or output files for the bioinformatics workflow released on the following Github site: https://github.com/rmclarklab/Zmays_cis_trans. The project is described in a manuscript titled “Concerted <em>cis</em> and <em>trans</em> effects underpin heightened defense gene expression in multi-herbivore resistant maize lines” by Meiyuan Ji, Huyen Bui, Ricardo A. Ramirez, and Richard M. Clark. Provided are SNP-corrected genomes for B96 and B75 and associated gene expresssion data. The large files are provided in a compressed tar archive, and a README file (README.txt included in the archive) describes each file in the archive. As described on the Github site and in the manuscript, associated DNA-seq and RNA-seq read data are publicly available from the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under PRJNA771871 and PRJNA478866, respectively.
DOI: 10.6084/m9.figshare.19746361
title: Data for Accounting for the aircraft emissions of China's domestic routes during 2014-2019

description: CCDemissions
DOI: 10.6084/m9.figshare.19746361.v2
title: Data for Accounting for the aircraft emissions of China's domestic routes during 2014-2019

description: CCDemissions
DOI: 10.6084/m9.figshare.19746361.v1
title: Data for Accounting for the aircraft emissions of China's domestic routes during 2014-2019

description: The CCD and LTO emissions of each route and airline for the six pollutions are shown in Supplementary Tables S1-S6. The emission intensities of the six pollutions of each aircraft type can be found in Supplementary Tables S7-S12.
DOI: 10.5066/p9m5zsq0
title: Geospatial Files for the Geologic Map of the Stibnite Mining Area, Valley County, Idaho

description: These geospatial files are the essential components for the Geologic Map of the Stibnite Mining Area in Valley County, Idaho, which was published by the Idaho Geological Survey in 2022. Three main file types are in this dataset: geographic, geologic, and mining. Geographic files are map extent, lidar base, topographic contours, labels for contours, waterways, and roads. Geologic files are geologic map units, faults, structural lines meaning axial traces, structural points like bedding strike and dip locations, cross section lines, and drill core sample locations. Lastly, mining files are disturbed ground features including open pit polygons or outlines, and general mining features such as the location of an adit. File formats are shape, [...]
DOI: 10.5281/zenodo.6540603
title: Audio Rendered Using Symbolic Music Data Sampled From DMelodies

description: This is a dataset of audio files rendered using a subset of symbolic music data from DMelodies.
DOI: 10.5281/zenodo.6540602
title: Audio Rendered Using Symbolic Music Data Sampled From DMelodies

description: This is a dataset of audio files rendered using a subset of symbolic music data from DMelodies.
DOI: 10.5281/zenodo.6347122
title: Figure data and model used in Stranded fossil-fuel assets translate to major losses for investors in advanced economies

description: The package contains i) the figure code and underlying data to create all figures in the main paper and supplementary information of the journal article and ii) the network and imputation model used to calculate the shock calculation.
DOI: 10.5281/zenodo.6347121
title: Figure data and model used in Stranded fossil-fuel assets translate to major losses for investors in advanced economies

description: The package contains i) the figure code and underlying data to create all figures in the main paper and supplementary information of the journal article and ii) the network and imputation model used to calculate the shock calculation.
DOI: 10.5281/zenodo.6535271
title: tuta_implicit_tuta_vocab_sheets

description: TUTA implicit + Original TUTA vocab DATA: spreadsheets
DOI: 10.5281/zenodo.6535270
title: tuta_implicit_tuta_vocab_sheets

description: TUTA implicit + Original TUTA vocab DATA: spreadsheets
DOI: 10.5281/zenodo.6540504
title: Validation Data used for manuscript "Climate Projections over the Great Lakes Region: Using Two-way Coupling of a Regional Climate Model with a 3-D Lake Model"

description: those are the processed data that used for model-data comparison in the manuscript "Climate Projections over the Great Lakes Region: Using Two-way Coupling of a Regional Climate Model with a 3-D Lake Model", including Lake Surface Temperature and Lake Surface Ice Cover from Great Lakes Surface Environmental Analysis (GLSEA), Surface Air temperature and Precipitation from Climatic Research Unit (CRU).
DOI: 10.5281/zenodo.6540503
title: Validation Data used for manuscript "Climate Projections over the Great Lakes Region: Using Two-way Coupling of a Regional Climate Model with a 3-D Lake Model"

description: those are the processed data that used for model-data comparison in the manuscript "Climate Projections over the Great Lakes Region: Using Two-way Coupling of a Regional Climate Model with a 3-D Lake Model", including Lake Surface Temperature and Lake Surface Ice Cover from Great Lakes Surface Environmental Analysis (GLSEA), Surface Air temperature and Precipitation from Climatic Research Unit (CRU).
DOI: 10.25919/n61m-c434
title: Comparison of materials for rapid passive collection of environmental DNA

description: Passive collection is an emerging sampling method for environmental DNA (eDNA) in aquatic systems. Passive eDNA collection is inexpensive, efficient, and requires minimal equipment, making it suited to high density sampling and remote deployment. Here we provide the raw sequence data and final data tables produced from an experiment where we compared the effectiveness of nine membrane materials for passively collecting fish eDNA from a 3 million litre marine mesocosm. We submerged materials (cellulose, cellulose with 1% and 3% chitosan, cellulose overlayed with electrospun nanofibers and 1% chitosan, cotton fibres, hemp fibres and sponge with either zeolite or active carbon) for intervals between five and 1080 minutes. We show that for most materials, with as little as five minutes submersion, mitochondrial fish eDNA measured with qPCR, and fish species richness measured with metabarcoding, was comparable to that collected by conventional filtering. Furthermore, PCR template DNA concentrations and species richness were generally not improved significantly by longer submersion. The associated manuscript is published in Molecular Ecology Resources.
DOI: 10.25919/cmn7-1j48
title: Code for 'Recommendations for the Formulation of Grazing in Marine Biogeochemical and Ecosystem Models'

description: Code for 'Recommendations for the Formulation of Grazing in Marine Biogeochemical and Ecosystem Models' published in Progress in Oceanography
DOI: 10.17632/c2sjfvsct6.1
title: Emel Tahir Spirulina Cisplatin Dataset

description: The effect of spirulina on cisplatin ototoxicity
DOI: 10.17632/c5334rbvh5.1
title: Satar et al._2021

description: Is Capsella bursa-pastoris a key overwintering plant for aphids in the Mediterranean Region?
DOI: 10.17632/sm77krbnv7.1
title: Mendeley Supplementary Table 1 for "Personal history of rosacea and risk of basal cell carcinoma of the face: a regional analysis of Rhode Island"

description: Location of basal cell carcinoma (BCC) by history of rosacea among patients with a BCC diagnosis at Brown Dermatology (2016-2020)
DOI: 10.17632/b5gwh2y65d.2
title: Auditory DID: ERP signature of target processing

description: Data from a behavioral study including the factors 'distractor number' (0,1,or n), cue-target SOA (0 va 300 ms), and presentation mode (separated vs superimposed streams).
Data from an ERP experiment including the factors 'cue-alone vs cue+target', 'hit vs miss', and electrode position.
PsychoPy Presentation Code and Stimulus Material