cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17909/pr0c-c679
title: HST SNAP Data for SPT-CLJ2215-3537
DOI: 10.34740/kaggle/dsv/4435685
title: 💥📰 Daily Breaking News Twitter Dataset
DOI: 10.6084/m9.figshare.21454497.v1
title: Luminex raw calibrated FCS files

description: <strong>ISEVxTech rEV Characterization Study</strong> The purpose of the study is to highlight the utility that each assay/platform can provide for the research community and demonstrate what is achievable by the manufacturer. It is clear from the EV literature that orthogonal measurements of EVs is recommended and it is our aim to demonstrate the concordance and utility of data acquired from different platforms that work in complementary ways. Simultaneously, the organizers are aiming to promote reporting transparency, along with standard data analysis and reporting. This study will kick-start an open ISEV Task Force standardization study, with the sponsor company data setting a benchmark for their platforms / assays. <br> <strong>This data was acquired in CellStream and ImageStream imaging flow cytometry systems using recombinant GFP-EVs. This data set contains raw calibrated data. Calibration performed in FCS Express.</strong> <br> <strong>Copyright 2022 Luminex Corporation, a DiaSorin Company. For research use only. </strong>
DOI: 10.5281/zenodo.7272660
title: Annotated Ultrasound Liver images

description: We public the ultrasound liver images, which were annotated to show the outlines, livers, and liver mass regions. This dataset despite being open to public access, is subject to copyright. Any use of data contained within this dataset must receive appropriate acknowledgement and credit, meaning you should contact the author of the published data and cite the publicaion and the URL.
DOI: 10.5281/zenodo.7272659
title: Annotated Ultrasound Liver images

description: We public the ultrasound liver images, which were annotated to show the outlines, livers, and liver mass regions. This dataset despite being open to public access, is subject to copyright. Any use of data contained within this dataset must receive appropriate acknowledgement and credit, meaning you should contact the author of the published data and cite the publicaion and the URL.
DOI: 10.34740/kaggle/dsv/4435760
title: 💥📰 Daily Breaking News Twitter Dataset
DOI: 10.6084/m9.figshare.21454554
title: Full list of survey responses about criteria to determine pornography for Healthy Sexual Development

description: Full list of survey responses about criteria to determine pornography for Healthy Sexual Development
DOI: 10.6084/m9.figshare.21454554.v1
title: Full list of survey responses about criteria to determine pornography for Healthy Sexual Development

description: Full list of survey responses about criteria to determine pornography for Healthy Sexual Development
DOI: 10.6084/m9.figshare.21454542
title: 52 razor clam ABC

description: The file contains the coding and protein sequences of the total 52 ABC transporters identified in razor clam(<em>Sinonovacula constricta</em>).
DOI: 10.6084/m9.figshare.21454542.v1
title: 52 razor clam ABC

description: The file contains the coding and protein sequences of the total 52 ABC transporters identified in razor clam(<em>Sinonovacula constricta</em>).
DOI: 10.6084/m9.figshare.21454491
title: adsorbed data.csv

description: sheet 1 shows the data of the N<sub>2</sub> adsorbption of samples.Sheet 2 shows the data of the hydrogen adsorbption of samples.
DOI: 10.6084/m9.figshare.21454560
title: Digital divide of urban and suburban vocational school teachers: Technology use for teaching

description: The data was collected for Vocational school teachers through survey
DOI: 10.6084/m9.figshare.21454601
title: Dammann et al_Biol Lett_long_tree.nex from Longevity of a solitary mole-rat species and its implications for the assumed link between sociality and longevity in African mole-rats (Bathyergidae)

description: phylogenetic information
DOI: 10.6084/m9.figshare.21454601.v1
title: Dammann et al_Biol Lett_long_tree.nex from Longevity of a solitary mole-rat species and its implications for the assumed link between sociality and longevity in African mole-rats (Bathyergidae)

description: phylogenetic information
DOI: 10.6084/m9.figshare.21454607
title: Dammann et al_Biol Lett_raw data_Longevity_Bathyergid_species from Longevity of a solitary mole-rat species and its implications for the assumed link between sociality and longevity in African mole-rats (Bathyergidae)

description: data on longevity and sample sizes for different bathyergid species
DOI: 10.6084/m9.figshare.21454607.v1
title: Dammann et al_Biol Lett_raw data_Longevity_Bathyergid_species from Longevity of a solitary mole-rat species and its implications for the assumed link between sociality and longevity in African mole-rats (Bathyergidae)

description: data on longevity and sample sizes for different bathyergid species
DOI: 10.6084/m9.figshare.21454610
title: Dammann et al_Biol Lett_raw data_Heliophobius growth and survival from Longevity of a solitary mole-rat species and its implications for the assumed link between sociality and longevity in African mole-rats (Bathyergidae)

description: raw data on growth and survival in silvery mole-rats
DOI: 10.6084/m9.figshare.21454610.v1
title: Dammann et al_Biol Lett_raw data_Heliophobius growth and survival from Longevity of a solitary mole-rat species and its implications for the assumed link between sociality and longevity in African mole-rats (Bathyergidae)

description: raw data on growth and survival in silvery mole-rats
DOI: 10.6084/m9.figshare.21454613
title: Dammann et al_Biol Lett_longevity.R from Longevity of a solitary mole-rat species and its implications for the assumed link between sociality and longevity in African mole-rats (Bathyergidae)

description: R code for modelling causal effects
DOI: 10.6084/m9.figshare.21454613.v1
title: Dammann et al_Biol Lett_longevity.R from Longevity of a solitary mole-rat species and its implications for the assumed link between sociality and longevity in African mole-rats (Bathyergidae)

description: R code for modelling causal effects
DOI: 10.6084/m9.figshare.20576610.v2
title: SUPPLEMENTS

description: This supplement contains <em>Supplementary figure S1 Risk of Bias of Included Studies, </em><em>Supplementary figure S2-S7: Heterogeneity of outcome measures, </em><em>Supplementary figure S8-S20: The Trial Sequential Analysis of the primary outcomes, </em>Table S1. Search Strategy: PubMed, Table S2. Search Strategy: Embase, Table S3. Search Strategy: Cochrane Library, Table S4. Search Strategy: Web of Science, Table S5. Search Strategy: the Chinese Scientific Journal database (VIP), Table S6. Search Strategy: Wanfang database, Table S7. Search Strategy: China National Knowledge Infrastructure (CNKI), Table S8. Search Strategy: SinoMed, <em>Supplementary table S9: Summary of All Included Studies, </em><em>Supplementary table S10: More details about the product information of 7 TCMIs, </em><em>Supplementary table S11: Specific intervention methods of the study, </em><em>Supplementary table S12: Comparisons of the fit of consistency and inconsistency models using deviance information criteria (DIC), </em><em>Supplementary table S14: League table for treatment comparisons in sensitivity analyses by excluding studies that were not within 14 to 30 days of treatment, </em><em>Supplementary table S15: League table for treatment comparisons in sensitivity analyses by excluding studies that were high risk bias, </em><em>Supplementary table S16: The PRISMA checklist of this meta-analysis.</em>
DOI: 10.5281/zenodo.7272680
title: All data support published article "Function of four tryptophan residues on Cel7A catalytic efficiency: insight into cellulase screening strategy based on natural cellulose or cellulose analogs"

description: There is a high level of conservation of tryptophans within the active site architecture of the cellulase family, whereas the function of the four tryptophans in the catalytic domain of Cel7A is unclear. By mutating four tryptophan residues in the catalytic domain of Cel7A from <em>Penicillium piceum</em> (PpCel7A), the binding affinity between PpCel7A and <em>p-</em>nitrophenol-D-cellobioside (<em>p</em>NPC) was reduced as determined by Michaelis–Menten constants, molecular dynamics simulations, and fluorescence spectroscopy. Furthermore, PpCel7A variants showed a reduced level of cellobiohydrolase activity against cellulose analogs or natural cellulose. Therefore, it could be concluded four tryptophan residues in Cel7A played a critical role in substrate binding. Mutagenesis results indicated that the W390 stacking interactions at the -2 site played an essential role in facilitating substrate distortion to the -1 site. As soon as the function was altered, the mutation would inevitably affect the catalytic activity against the natural substrate. Interestingly, no clear relationship was found between the cellobiohydrolase activity of PpCel7A variants against <em>p</em>NPC and Avicel. <em>p</em>NP contains many electrophilic groups that may result in overestimation of the binding constant between tryptophan residues and <em>p</em>NPC in comparison to the natural substrate. Consequently, screening improved cellulase using cellulose analogs would divert attention from the target direction for lignocellulose biorefinery. Clarifying mechanism of catalytic diversity on the natural cellulose or cellulose analogs may give better insight into cellulase screening and selecting strategy.
DOI: 10.5281/zenodo.7272679
title: All data support published article "Function of four tryptophan residues on Cel7A catalytic efficiency: insight into cellulase screening strategy based on natural cellulose or cellulose analogs"

description: There is a high level of conservation of tryptophans within the active site architecture of the cellulase family, whereas the function of the four tryptophans in the catalytic domain of Cel7A is unclear. By mutating four tryptophan residues in the catalytic domain of Cel7A from <em>Penicillium piceum</em> (PpCel7A), the binding affinity between PpCel7A and <em>p-</em>nitrophenol-D-cellobioside (<em>p</em>NPC) was reduced as determined by Michaelis–Menten constants, molecular dynamics simulations, and fluorescence spectroscopy. Furthermore, PpCel7A variants showed a reduced level of cellobiohydrolase activity against cellulose analogs or natural cellulose. Therefore, it could be concluded four tryptophan residues in Cel7A played a critical role in substrate binding. Mutagenesis results indicated that the W390 stacking interactions at the -2 site played an essential role in facilitating substrate distortion to the -1 site. As soon as the function was altered, the mutation would inevitably affect the catalytic activity against the natural substrate. Interestingly, no clear relationship was found between the cellobiohydrolase activity of PpCel7A variants against <em>p</em>NPC and Avicel. <em>p</em>NP contains many electrophilic groups that may result in overestimation of the binding constant between tryptophan residues and <em>p</em>NPC in comparison to the natural substrate. Consequently, screening improved cellulase using cellulose analogs would divert attention from the target direction for lignocellulose biorefinery. Clarifying mechanism of catalytic diversity on the natural cellulose or cellulose analogs may give better insight into cellulase screening and selecting strategy.
DOI: 10.5517/ccdc.csd.cc2ck4wz
title: CCDC 2191231: Experimental Crystal Structure Determination

description: Related Article: Shotaro Ito, Youichi Ishii, Takuya Kuwabara|2022|Dalton Trans.|51|16397|doi:10.1039/D2DT02649J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ck4x0
title: CCDC 2191232: Experimental Crystal Structure Determination

description: Related Article: Shotaro Ito, Youichi Ishii, Takuya Kuwabara|2022|Dalton Trans.|51|16397|doi:10.1039/D2DT02649J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7272553
title: RxRx1-Wilds Cell-Level Dataset

description: Cell-level dataset of RxRx1-Wilds, for the paper "<em>Incorporating Knowledge of Plates in Batch Normalization Improves Generalization of Deep Learning for Microscopy Images</em><strong>" </strong>by Alex Lin and Alex Lu. This dataset contains cell crops of the publicly available RxRx1-Wilds, accessed at https://wilds.stanford.edu/datasets/.
DOI: 10.5281/zenodo.7272552
title: RxRx1-Wilds Cell-Level Dataset

description: Cell-level dataset of RxRx1-Wilds, for the paper "<em>Incorporating Knowledge of Plates in Batch Normalization Improves Generalization of Deep Learning for Microscopy Images</em><strong>" </strong>by Alex Lin and Alex Lu. This dataset contains cell crops of the publicly available RxRx1-Wilds, accessed at https://wilds.stanford.edu/datasets/.
DOI: 10.5281/zenodo.7272702
title: All data support the published articel "Loop-optimization of Trichoderma reesei endoglucanases for balancing the activity–stability trade-off through cross-strategy between machine learning and the B-factor analysis"

description: <em>Trichoderma reesei</em> endoglucanases (EGs) have limited industrial applications due to its low thermostability and activity. Here, we aimed to improve the thermostability of EGs from<em> T.reesei</em> without reducing its activity counteracting the activity-stability trade-off. A cross-strategy combination of machine learning and B-factor analysis was used to predict beneficial amino acid substitution in EG loop optimization. Experimental validation showed single-site mutated EG concomitantly improved enzymatic activity and thermal properties by 17.21%–18.06% and 49.85%–62.90%, respectively, compared with wild-type EGs. Furthermore, the mechanism explained mutant variants had lower RMSD values and a more stable overall structure than the wild type. According to this study, EGs loop optimization is crucial for balancing the activity-stability trade-off, which may provide new insights into how loop region function interacts with enzymatic characteristics. Moreover, the cross-strategy between machine learning and B-factor analysis improved superior enzyme activity-stability performance, which integrated structure-dependent and sequence-dependent information.
DOI: 10.5281/zenodo.7272701
title: All data support the published articel "Loop-optimization of Trichoderma reesei endoglucanases for balancing the activity–stability trade-off through cross-strategy between machine learning and the B-factor analysis"

description: <em>Trichoderma reesei</em> endoglucanases (EGs) have limited industrial applications due to its low thermostability and activity. Here, we aimed to improve the thermostability of EGs from<em> T.reesei</em> without reducing its activity counteracting the activity-stability trade-off. A cross-strategy combination of machine learning and B-factor analysis was used to predict beneficial amino acid substitution in EG loop optimization. Experimental validation showed single-site mutated EG concomitantly improved enzymatic activity and thermal properties by 17.21%–18.06% and 49.85%–62.90%, respectively, compared with wild-type EGs. Furthermore, the mechanism explained mutant variants had lower RMSD values and a more stable overall structure than the wild type. According to this study, EGs loop optimization is crucial for balancing the activity-stability trade-off, which may provide new insights into how loop region function interacts with enzymatic characteristics. Moreover, the cross-strategy between machine learning and B-factor analysis improved superior enzyme activity-stability performance, which integrated structure-dependent and sequence-dependent information.
DOI: 10.6084/m9.figshare.21454671.v1
title: Phototherapy with theranostic Co3O4 nanoplates eliminates metastatic solid tumors by activating systemic tumor immunity and memory

description: Solid tumors develop complex and heterogenous immune suppressive environment, and thus are frequently resistant to existing immunotherapies. To effectively treat malignant solid tumors especially the metastatic ones, it is critical to develop strategies to activate tumor immunity by reversing the tumor-induced immune suppression. Here, we describe a near-infrared (NIR) responsive porous Co3O4 nanoplates (pCo3O4 NPs) that can deliver a single laser triggered photothermal/photodynamic combination therapy. This phototherapy can eliminate the treated primary tumors and suppress distal tumors by disrupting the immune suppressive microenvironment and activating systemic tumor-specific immunity. The single cell sequence analysis of intra-tumoral immune populations demonstrated that this phototherapy can activate both intra-tumoral and systemic immune cells.
DOI: 10.3886/e113529v1-130325
title: Replication data for: Traditional Beliefs and Learning about Maternal Risk in Zambia

description: Maternal mortality remains very high in many parts of the developing world, especially in sub-Saharan Africa. While maternal deaths are observable, it may not be straightforward for individuals to learn about risk factors. This paper utilizes novel data on male and female perceptions of maternal risk in Zambia to document that superstitions about causes of maternal mortality are pervasive and to uncover evidence that such beliefs impede learning about maternal health risk levels and correlates. In our data, people who hold traditional beliefs disregard past birth complications completely in assessing future risk, unlike those who hold modern beliefs.
DOI: 10.6084/m9.figshare.21454497.v2
title: Luminex Corporation_Amnis_ISEVxTech_raw calibrated FCS files

description: <strong>ISEVxTech rEV Characterization Study</strong> The purpose of the study is to highlight the utility that each assay/platform can provide for the research community and demonstrate what is achievable by the manufacturer. It is clear from the EV literature that orthogonal measurements of EVs is recommended and it is our aim to demonstrate the concordance and utility of data acquired from different platforms that work in complementary ways. Simultaneously, the organizers are aiming to promote reporting transparency, along with standard data analysis and reporting. This study will kick-start an open ISEV Task Force standardization study, with the sponsor company data setting a benchmark for their platforms / assays. <br> <strong>This data was acquired in CellStream and ImageStream imaging flow cytometry systems using recombinant GFP-EVs. This data set contains raw calibrated data. Calibration performed in FCS Express.</strong> <br> <strong>Copyright 2022 Luminex Corporation, a DiaSorin Company. For research use only. </strong>
DOI: 10.6084/m9.figshare.20576610.v3
title: SUPPLEMENTS

description: This supplement contains <em>Supplementary figure S1 Risk of Bias of Included Studies, </em><em>Supplementary figure S2-S7: Heterogeneity of outcome measures, </em><em>Supplementary figure S8-S20: The Trial Sequential Analysis of the primary outcomes, </em>Table S1. Search Strategy: PubMed, Table S2. Search Strategy: Embase, Table S3. Search Strategy: Cochrane Library, Table S4. Search Strategy: Web of Science, Table S5. Search Strategy: the Chinese Scientific Journal database (VIP), Table S6. Search Strategy: Wanfang database, Table S7. Search Strategy: China National Knowledge Infrastructure (CNKI), Table S8. Search Strategy: SinoMed, <em>Supplementary table S9: Summary of All Included Studies, </em><em>Supplementary table S10: More details about the product information of 7 TCMIs, </em><em>Supplementary table S11: Specific intervention methods of the study, </em><em>Supplementary table S12: Comparisons of the fit of consistency and inconsistency models using deviance information criteria (DIC), </em><em>Supplementary table S14: League table for treatment comparisons in sensitivity analyses by excluding studies that were not within 14 to 30 days of treatment, </em><em>Supplementary table S15: League table for treatment comparisons in sensitivity analyses by excluding studies that were high risk bias, </em><em>Supplementary table S16: The PRISMA checklist of this meta-analysis.</em>
DOI: 10.34740/kaggle/dsv/4435842
title: 🇺🇦 Ukraine Conflict Twitter Dataset
DOI: 10.25442/hku.21453636
title: Supporting data for "Acoustic Streaming in Microchannels for Particle Sorting"

description: The data set provides numerical and experimental results regarding particle movement under influnce by acoustic actuation. <br> Numerical results present the acoustic fields, streaming flow field, and the position of 0.5-micron particles is presented to show the particle’s trajectory. For the study regarding the fluid / solid interaction, the displacement amplitude is provided. Experimental results the end position of particles with different diameters via images, and the formation of streaming flow via video. The data is collected from devices with changing height.
DOI: 10.25442/hku.21453636.v1
title: Supporting data for "Acoustic Streaming in Microchannels for Particle Sorting"

description: The data set provides numerical and experimental results regarding particle movement under influnce by acoustic actuation. <br> Numerical results present the acoustic fields, streaming flow field, and the position of 0.5-micron particles is presented to show the particle’s trajectory. For the study regarding the fluid / solid interaction, the displacement amplitude is provided. Experimental results the end position of particles with different diameters via images, and the formation of streaming flow via video. The data is collected from devices with changing height.
DOI: 10.6084/m9.figshare.20713642
title: Gender bias in ecosystem restoration: from science to practice

description: These datasets and scripts are associated to the publication "Gender bias in ecosystem restoration: from science to practice" in Restoration Ecology. <strong>Datasets:</strong> "doi" includes publications on ecosystem restoration, gender and country of the authors, year, restored ecosystem and impact of the study. "tw_tweet" includes information about tweets associated to each publication in "doi". "projects_ser_all_years" contains projects compilled in the Society for Ecological Restoration’s (SER) project repository, with gender and the country of the coordinators, year and restored ecosystem. "certified_ser" contains restoration practitioners certified by SER, their gender and country and year of certification. <strong>Scripts: </strong>R code used for the analysis and plots associated to each research question (RQ1, RQ2, RQ3). See the full article for further information.
DOI: 10.6084/m9.figshare.19744933.v6
title: Chatbot Ai-aun

description: Chatbot Ai-aun
DOI: 10.6084/m9.figshare.19744933.v7
title: Chatbot Ai-aun

description: Chatbot Ai-aun
DOI: 10.25919/8asc-d258
title: IMOS Biological Ocean Observer - data

description: This is a collection of data that is used to populate the IMOS Biological Ocean Obeserver (BOO) Shiny App. The IMOS biological and supporting data is accessed directly from the AODN, reformatted to the requirements of the Shiny App and stored in this location.