cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5123407.v1
title: Supplementary Material for: Economics of Medically Unexplained Symptoms: A Systematic Review of the Literature

description: <b><i>Objective:</i></b> To review cost-of-illness studies (COI) and economic evaluations (EE) conducted for medically unexplained symptoms and to analyze their methods and results. <b><i>Methods:</i></b> We searched the databases PubMed, PsycINFO and National Health Service Economic Evaluations Database of the University of York. Cost data were inflated to 2006 using country-specific gross domestic product inflators and converted to 2006 USD purchasing power parities. <b><i>Results:</i></b> We identified 5 COI and 8 EE, of which 6 were cost-minimization analyses and 2 were cost-effectiveness analyses. All studies used patient level data collected between 1980 and 2004 and were predominantly conducted in the USA (n = 10). COI found annual excess health care costs of somatizing patients between 432 and 5,353 USD in 2006 values. Indirect costs were estimated by only one EE and added up to about 18,000 USD per year. In EE, educational interventions for physicians as well as cognitive-behavioral therapy approaches for patients were evaluated. For both types of interventions, effectiveness was either shown within EE or by previous studies. Most EE found (often insignificant) cost reductions resulting from the interventions, but only two studies explicitly combined changes in costs with data on effectiveness to cost-effectiveness ratios (ratio of additional costs to additional effects). <b><i>Conclusions:</i></b> Medically unexplained symptoms cause relevant annual excess costs in health care that are comparable to mental health problems like depression or anxiety disorders and which may be reduced by interventions targeting physicians as well as patients. More extensive research on indirect costs and cost-effectiveness is needed.
DOI: 10.17632/k3nsmbcrj2
title: Dataset on the optimization by response surface methodology for the synthesis of silver nanoparticles using Laxitextum bicolor mushroom

description: Raw datafile on CCD optimization
DOI: 10.17632/hngcvhf369
title: Replication Folder for 'The International Spillovers of US Monetary Policy Uncertainty: Is it a dilemma or trilemma for monetary policy?'

description: 'The International Spillovers of US Monetary Policy Uncertainty: Is it a dilemma or trilemma for monetary policy?'Jingru Luo, Jingting Liu, Joseph Dennis Alba, Peiming Wang
DOI: 10.17632/p9bsmj4xwg
title: Data for: Feature Extraction of Rotor Fault Based on EEMD and Curve Code

description: These data are denoised signals processed by wavelet thresholding-based denoising. They are represented by a 2-dimensional matrix. Each row represents a vibration signal,and the first 45 rows belong to mormal rotor, the second contact-rubbing, the third unbalance and the final misalignment. Each column represents the length of data, 2048, or time, 1s.
DOI: 10.6084/m9.figshare.12228332.v1
title: Comparison of dynamic mechanical properties of dentin between deciduous and permanent teeth

description: <b>Purpose</b>: Even though differences between deciduous and permanent dentin have been widely studied, their dynamic mechanical behavior has never been compared. The objective of the present study was to quantify the differences between deciduous and permanent dentin under cyclic mechanical loading, which is similar to masticatory stress. <b>Materials and Methods</b>: Deciduous and permanent teeth, respectively from children (9 ~ 12 years old) and young people (18 ~ 25 years old), were wet-sectioned perpendicular to the longitudinal axis and the central specimens of coronal dentin were evaluated by nanoscopic dynamic mechanical analysis (nanoDMA). <b>Results</b>: The average storage, loss, and complex moduli, as well as the hardness of deciduous dentin were signiﬁcantly (p <b>Conclusions</b>: Compared with deciduous dentin, permanent dentin exhibits higher stiffness with reduced energy loss during deformation, and therefore superior mechanical characteristics for the mastication process.
DOI: 10.17632/ppbhwn3bcy
title: Tara Oceans - SW Atlantic Phytoplankton

description: This is Supplementary Material and Appendix 1 for Ibarbalz et al., 2022. Phytoplankton DNA metabarcoding in four sectors of the SW Atlantic in the context of the global ocean. Ecología Austral, in press. See http://taraoceans.sb-roscoff.fr/EukDiv/ for more technical details.
DOI: 10.6084/m9.figshare.11938158.v1
title: Common and specific genes

description: The emergence of eusociality is one of the major events in evolution. Although several previous studies have investigated the mechanism underlying caste differentiation and social behavior of eusocial insects including ants and honeybees, the molecular circuits governing the sociality of these insects remain obscure. In this study, we profiled the brain transcriptome and chromatin accessibility of all categories of adult castes: queens, males, gynes and workers in Monomorium pharaonis which is a typical caste-dependent eusocial insect. We created a comprehensive dataset including 16 RNA-seq and 16 ATAC-seq profiles from 4 biological replicates. We also demonstrated strong reproducibility of the datasets and identified specific genes and open chromatin regions in the genome that may be associated with caste differentiation. Overall, our data will be a valuable resource for further study of the mechanisms underlying eusocial insect behavior, particularly the role of brain in the control of eusociality.
DOI: 10.6084/m9.figshare.21558957.v1
title: Supplementary Material for: Prospective Test Performance of Nonfasting Biomarkers to Identify Dysglycemia in Children and Adolescents

description: Introduction: Test performance screening measures for dysglycemia have not been evaluated prospectively in youth. This study evaluated the prospective test performance of random glucose (RG), 1-hour nonfasting glucose challenge test (1-h GCT), Hemoglobin A1c (HbA1c), fructosamine (FA), and 1,5-Anhydroglucitol (1,5-AG) for identifying dysglycemia. Methods: Youth ages 8-17 years with overweight or obesity (body mass index, BMI, ≥85th percentile) without known diabetes completed nonfasting tests at baseline (n=176) and returned an average of 1.1 years later for two formal fasting 2-hour oral glucose tolerance tests. Outcomes included glucose-defined dysglycemia (fasting plasma glucose ≥100 mg/dL or 2-hour plasma glucose ≥140 mg/dL) or elevated HbA1c (≥5.7%). Longitudinal test performance was evaluated using receiver operating characteristic (ROC) curves and calculation of area under the curve (AUC). Results: Glucose-defined dysglycemia, elevated HbA1c, and either dysglycemia or elevated HbA1c were present in 15 (8.5%), 11 (6.3%), and 23 (13.1%) participants at baseline, and 16 (9.1%), 18 (10.3%), and 28 (15.9%) participants at follow-up. For prediction of glucose-defined dysglycemia at follow-up, RG, 1-h GCT, and HbA1c had similar performance (0.68 (95% CI 0.55-0.80), 0.76 (95% CI 0.64-0.89), and 0.70 (95% CI 0.56-0.84)), while FA and 1,5-AG performed poorly. For prediction of HbA1c at follow-up, baseline HbA1c had strong performance (AUC 0.93 (95% CI 0.88-0.98)), RG had moderate performance (AUC 0.67 (0.54-0.79)), while 1-h GCT, FA, and 1,5-AG performed poorly. Conclusion: HbA1c and nonfasting glucose tests had reasonable longitudinal discrimination identifying adolescents at risk for dysglycemia, but performance depended on outcome definition.
DOI: 10.6084/m9.figshare.21648370.v1
title: A Flexible Zero-Inflated Poisson-Gamma Model with Application to Microbiome Sequence Count Data

description: In microbiome studies, it is of interest to use a sample from a population of microbes, such as the gut microbiota community, to estimate the population proportion of these taxa. However, due to biases introduced in sampling and preprocessing steps, these observed taxa abundances may not reflect true taxa abundance patterns in the ecosystem. Repeated measures, including longitudinal study designs, may be potential solutions to mitigate the discrepancy between observed abundances and true underlying abundances. Yet, widely observed zero-inflation and over-dispersion issues can distort downstream statistical analyses aiming to associate taxa abundances with covariates of interest. To this end, we propose a Zero-Inflated Poisson Gamma (ZIPG) model framework to address these aforementioned challenges. From a perspective of measurement errors, we accommodate the discrepancy between observations and truths by decomposing the mean parameter in Poisson regression into a true abundance level and a multiplicative measurement of sampling variability from the microbial ecosystem. Then, we provide a flexible ZIPG model framework by connecting both the mean abundance and the variability of abundances to different covariates, and build valid statistical inference procedures for both parameter estimation and hypothesis testing. Through comprehensive simulation studies and real data applications, the proposed ZIPG method provides significant insights into distinguished differential variability and mean abundance. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.22582348.v2
title: Novice and Intermediate learners working in all conditions

description: Novice learners working in the speaking-speaking condition.
DOI: 10.6084/m9.figshare.27048283.v1
title: Patellogastropod transcriptomes and proteins

description: Transcriptome assemblies and proteins for Patellogastropods:<i> Lottia orbigny, Scurria araucana, Scurria zebrina, Scurria scurra, Scurria viridula</i>.
DOI: 10.6084/m9.figshare.7637210.v2
title: A global, empirical, harmonised dataset of Soil Organic Carbon under Perennial Crops

description: This dataset is associated with the manuscript "Soil organic carbon changes under perennial crops. A global, empirical, harmonised dataset" by:<i> </i>A. Ledo et al.
DOI: 10.17632/zvgcm5sjc6
title: QCDNUM: Fast QCD evolution and convolution

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract The QCDNUM program numerically solves the evolution equations for parton densities and fragmentation functions in perturbative QCD. Un-polarised parton densities can be evolved up to next-to-next-to-leading order in powers of the strong coupling constant, while polarised densities or fragmentation functions can be evolved up to next-to-leading order. Other types of evolution can be accessed by feeding alternative sets of evolution kernels into the program. A versatile convolution engine provi... Title of program: QCDNUM version: 17.00 Catalogue Id: AEHV_v1_0 Nature of problem Evolution of the strong coupling constant and parton densities, up to next-to-next-to-leading order in perturbative QCD. Computation of observable quantities by Mellin convolution of the evolved densities with partonic cross-sections. Versions of this program held in the CPC repository in Mendeley Data AEHV_v1_0; QCDNUM version: 17.00; 10.1016/j.cpc.2010.10.020
DOI: 10.6084/m9.figshare.21710252.v3
title: Dataset to accompany paper: Depth profiles of Jerlov water types

description: Dataset to accompany paper: Depth profiles of Jerlov water types
DOI: 10.6084/m9.figshare.25336051.v2
title: The Swedish version of the Motivation and Pleasure Scale self-report (MAP-SR): psychometric properties in patients with schizophrenia or depression

description: Negative symptoms are commonly regarded as a symptom dimension belonging to schizophrenia spectrum disorders but are also present in depression. The recently developed Clinical Assessment Interview for Negative Symptoms (CAINS) has shown to be reliable and valid. A corresponding self-report questionnaire has also been developed, named the Motivation and Pleasure Scale - Self Report (MAP-SR). The purpose was to evaluate the psychometric properties of the Swedish version of the MAP-SR in patients with either schizophrenia or depression. The MAP-SR was translated to Swedish. Participants were 33 patients with schizophrenia spectrum disorders and 52 patients with a depressive disorder and they completed the MAP-SR, the CAINS and other measures assessing adjacent psychopathology, functioning and cognition. The internal consistency for the MAP-SR was adequate in both groups (schizophrenia spectrum α = .93, depressive disorder α = .82). Furthermore, the MAP-SR had a large correlation to the motivation and pleasure subscale of the CAINS in patients with schizophrenia disorders (r = −0.75, <i>p</i> &lt; .001), however among patients with depression this correlation was medium-to-large (<i>r</i> = −0.48, <i>p</i> &lt; 0.001). Findings suggest that the Swedish version of the MAP-SR shows promise as a useful measure of motivation and pleasure, especially in patients with schizophrenia spectrum disorders. Furthermore, results also suggest that the MAP-SR does not assess negative symptoms specifically, but that there is an overlap between depressive and negative symptoms.
DOI: 10.6084/m9.figshare.12738698.v3
title: Supporting data for SubcellularDistribution Pipeline

description: This data includes a "raw-data-metadata.csv" file, which is needed for the SubcellularDistribution pipeline to map results to specific RNAs and cell cycle stages.
DOI: 10.6084/m9.figshare.14161208.v1
title: Alignments and Tree Files

description: Alignments and Tree files for Ward et al. Desulfobulbales manuscript.
DOI: 10.6084/m9.figshare.22806743.v1
title: BM1

description: BM1: HLApollo flagship benchmark dataset
DOI: 10.6084/m9.figshare.28607396.v1
title: Pollution inhibits wild plant regeneration from seeds by one-third

description: Data and code for the manuscript "Pollution inhibits wild plant regeneration from seeds by one-third".
DOI: 10.6084/m9.figshare.1583322.v2
title: Conversion between geotropic and apogeotropic persistent direction-changing positional nystagmus

description: <i>Conclusion:</i> Clinical features in the course of conversion differed between patients with SSNHL and cupulopathy, which indicates that the pathophysiology of persistent geotropic or apogeotropic DCPN and the mechanism of the change in nystagmus direction may differ between the two groups. <i>Objective:</i> The aim of this study is to investigate clinical characteristics of 10 patients with persistent DCPN who exhibited a conversion of nystagmus direction between geotropic and apogeotropic, and discuss possible mechanisms. <i>Methods:</i> Using video-oculography, serial examinations of nystagmus in a head-roll test were performed. <i>Results:</i> Of these 10 patients, five had sudden sensorineural hearing loss (SSNHL) and the remaining five had cupulopathy. In SSNHL, direction of nystagmus changed from geotropic to apogeotropic in three patients and from apogeotropic to geotropic in two patients. In cupulopathy, persistent apogeotropic DCPN always preceded persistent geotropic DCPN. The change in nystagmus direction occurred earlier in patients with cupulopathy (1 or 2 days after vertigo onset) than in patients with SSNHL (4–23 days after vertigo onset). While the null plane was consistently identified on one side, regardless of the nystagmus direction in cupulopathy, it was not always identified on the side of hearing loss in SSNHL.
DOI: 10.6084/m9.figshare.17072042.v1
title: Data for: Balancing conservation priorities for grassland and forest specialist bird communities in agriculturally dominated landscapes

description: Data necessary to run the analyses for:<br>de Zwaan et al 2021. Balancing conservation priorities for grassland and forest specialist bird communities in agriculturally dominated landscapes. Biological Conservation.<br>See ReadMe file for more details on data contents. See publication for methodology.
DOI: 10.6084/m9.figshare.3555765.v1
title: Data Paper. Data Paper

description: File List bathymetry_30s.7z (MD5: dd855211bbcdee7d6862414da23d6da2) biogeo01_07_30s.7z (MD5: 396525db0abd9de2ede3d8fdeb15e8ee) biogeo08_17_30s.7z (MD5: 96c2417eed84e85f9896536b934c53e1) Monthly_Variables_30s.7z (MD5: 89016a8d17e8d8a1dddef0a121a83f5d) Additional high resolution raster files: Sea_Ice_30s.7z (MD5: 547d355294c530f63b9b0a73dedd2f3a) Low resolution MARSPEC data files: MARSPEC_2o5m.7z (MD5: 923c97d185adb0c72f158a84e2981391) MARSPEC_5m.7z (MD5: 95f7c3739c4f2889c2eff18afeffa489) MARSPEC_10m.7z (MD5: d91f3127f46f7004d116f14328bf4b71) Description Ecological niche models are widely used in terrestrial studies to address critical ecological and evolutionary questions related to past and future climate change, local adaptation and speciation, the discovery of rare endemics, and biological invasions. However the application of niche models to similar questions in marine ecosystems has lagged behind, in part due to the lack of a centralized high-resolution spatial data set representing both benthic and pelagic marine environments. Here we describe the creation of MARSPEC, a high-resolution GIS database of ocean climate layers intended for marine ecological niche modeling and other applications in marine spatial ecology. MARSPEC combines information related to topographic complexity of the seafloor with bioclimatic measures of sea surface temperature and salinity for the world ocean. We derived seven geophysical variables from a high-resolution raster grid representing depth of the seafloor (bathymetry) to characterize six facets of topographic complexity (east-west and north-south components of aspect, slope, concavity of the seafloor, and plan and profile curvature) and distance from shore. We further derived 10 bioclimatic variables describing the annual mean, range, variance and extreme values for temperature and salinity from long-term monthly climatological means obtained from remotely sensed and in situ oceanographic observations. All variables were clipped to a common land mask, interpolated to a nominal 1-km (30 arc-second) grid, and converted to an ESRI raster grid file format compatible with popular GIS programs. MARSPEC is a 10-fold improvement in spatial resolution over the next-best data set (Bio-ORACLE) and is the only high-resolution global marine data set to combine variables from the benthic and pelagic environments into a single database. Additionally, we provide the monthly climatological layers used to derive the bioclimatic variables, allowing users to calculate equivalent MARSPEC variables from anomaly data for past and future climate scenarios. A detailed description of GIS processing steps required to calculate the MARSPEC variables can be found in the metadata. <i>Key words: climate change; ecological niche modeling; GIS; marine spatial ecology; ocean climate; salinity; sea surface temperature; species distribution modeling.</i>
DOI: 10.6084/m9.figshare.7842824.v1
title: Additional file 13: of A large close relative of C. elegans is slow-developing but not long-lived

description: Viability_data.tsv. Viability data. (TSV 1 kb)
DOI: 10.17632/9bshc597y9
title: Polymer composite

description: Polymer matrix composite with non-metallic fraction from PCBs as a filler. The mechanical properties increase as well as the flame retardant performance in the composite material.
DOI: 10.17632/rnrmjkvjjc
title: Molecular Biomarker of Drug Resistance Developed from Patient-derived Organoids Predicts Survival of Colorectal Cancer Patients

description: Figure S3. All enriched hallmark and KEGG pathways by using GSEA associated with 5-Fu resistance. 
Figure S4. Up and down-regulated hallmark and KEGG molecular pathways by using GSEA between DRS-high and DRS-low patients in TCGA-CRC cohort.
DOI: 10.6084/m9.figshare.11307437
title: Bayesian Hierarchical Models With Conjugate Full-Conditional Distributions for Dependent Data From the Natural Exponential Family

description: We introduce a Bayesian approach for analyzing (possibly) high-dimensional dependent data that are distributed according to a member from the natural exponential family of distributions. This problem requires extensive methodological advancements, as jointly modeling high-dimensional dependent data leads to the so-called “big <i>n</i> problem.” The computational complexity of the “big <i>n</i> problem” is further exacerbated when allowing for non-Gaussian data models, as is the case here. Thus, we develop new computationally efficient distribution theory for this setting. In particular, we introduce the “conjugate multivariate distribution,” which is motivated by the Diaconis and Ylvisaker distribution. Furthermore, we provide substantial theoretical and methodological development including: results regarding conditional distributions, an asymptotic relationship with the multivariate normal distribution, conjugate prior distributions, and full-conditional distributions for a Gibbs sampler. To demonstrate the wide-applicability of the proposed methodology, we provide two simulation studies and three applications based on an epidemiology dataset, a federal statistics dataset, and an environmental dataset, respectively. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.14740791.v1
title: Edgar Mine 16S Amplicon Data

description: These are the demultiplexed and non-barcoded Fastq files of forward and reverse reads associated with the study conducted at Edgar Mine in Idaho Springs, Colorado.
DOI: 10.6084/m9.figshare.21673271.v1
title: Supplementary Material for: Trends and Disparities in Stage-specific Incidence of Hepatocellular Carcinoma among US Adults, 2004-2019

description: Introduction: To determine the stage-specific incidence trend of hepatocellular carcinoma (HCC) among US adults. Methods: The age-adjusted incidence rate was extracted from Surveillance, Epidemiology, and End Results database for localized, regional and distant HCC. Trend analyses were conducted in the overall population and stratified by demographic and sociodemographic variables. The annual percentage change (APC) in 2014-2019 was estimated to determine the stage-specific incidence trend. Results: Although the incidence in localized HCC significantly declined, the incidence for regional and distant HCC plateaued in 2014-2019 (APCs, 4.4% [95% CI, -0.2% to 9.3%] and -0.7% [95% CI, -1.8% to 0.5%], respectively) with age and race/ethnicity disparities. More pronounced increases for regional and distant HCC were observed among the elderly (APCs, 8.4% [95% CI, 4.8% to 12.2%] and 2.2% [95% CI, 1.7% to 2.7%] for regional and distant HCC, respectively), non-Hispanic White individuals (APCs, 4.0% [95% CI, 2.9% to 5.1%] and 1.5% [95% CI, 0.7% to 2.4%] for regional and distant HCC, respectively). Conclusions: Disparities in incidence trends may reflect the inequalities in access to primary health care. More efforts are still in great demand for the vulnerable population.
DOI: 10.6084/m9.figshare.23290004.v1
title: Annotated Seurat objects

description: Annotated Seurat objects for: Young1.All.T1 Young1.All.T2 Young1.HSC.T1T2 Young2.HSC.Seurat Young2.All.Seurat Old1.BMMC_HSPC.Seurat Old2.BMMC_HSPC.Seurat
DOI: 10.6084/m9.figshare.23996670.v1
title: Questionnaire - Depression, anxiety, and stress among adolescents in Shivamogga, Karnataka

description: DASS21 Questionnaire
DOI: 10.17632/m5czwjj3t5
title: A transcriptome-wide translational program defined by LIN28B expression level

description: anti-LIN28B, anti-LIN28A and anti-V5 Western Blot (two replicates each; un-cropped) are presented.