cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12471461.v16
title: Supplementary data for Knight et al. eLife 2021;10:e64325

description: 1. Supplementary File 1 (Summary data; MLST, pangenome, taxonomy, GWAS, toxins)<br> 2. Supplementary File 2 (Global MLST tree file, manuscript Figure 2) <br><br> 3. Supplementary File 3 (BEAST tree file, manuscript Figure 4)<br> 4. Supplementary File 4 (BactDating tree file, manuscript Figure 4)<br>5. Genome assemblies for final 260 ST dataset (gff format)
DOI: 10.6084/m9.figshare.14975205
title: Sando_et_al_2021_Figure1_https://doi.org/10.7554/eLife.59341

description: Source data for Figure 1 of Sando et al. (2021), eLifehttps://doi.org/10.7554/eLife.59341
DOI: 10.6084/m9.figshare.14975205.v3
title: Sando_et_al_2021_Figure1_https://doi.org/10.7554/eLife.59341

description: Source data for Figure 1 of Sando et al. (2021), eLifehttps://doi.org/10.7554/eLife.59341
DOI: 10.6084/m9.figshare.14975205.v2
title: Sando_et_al_2021_Figure1Source data for Sando et al 2021 - https://doi.org/10.7554/eLife.59341

description: Source data for Figure 1 of Sando et al. (2021), eLifehttps://doi.org/10.7554/eLife.59341Source data for Sando et al. (2021), eLife https://doi.org/10.7554/eLife.59341
DOI: 10.34810/data72/771
title: 02CO_1.MR.0004.0102.2013.03.10.17.33.16.406250.165478406.IMA
DOI: 10.6084/m9.figshare.14997856
title: Sando_et_al_2021_Figure6_https://doi.org/10.7554/eLife.59341

description: Source data for Sando et al. (2021), eLife https://doi.org/10.7554/eLife.59341
DOI: 10.6084/m9.figshare.14997856.v3
title: Sando_et_al_2021_Figure6_https://doi.org/10.7554/eLife.59341

description: Source data for Sando et al. (2021), eLife https://doi.org/10.7554/eLife.59341
DOI: 10.6084/m9.figshare.14997856.v2
title: Sando_et_al_2021_Figure6Source data for Sando et al 2021 - https://doi.org/10.7554/eLife.59341

description: Source data for Sando et al. (2021), eLife https://doi.org/10.7554/eLife.59341
DOI: 10.34810/data72/772
title: 02CO_1.MR.0004.0129.2013.03.10.17.33.16.406250.165478892.IMA
DOI: 10.34810/data72/773
title: 02CO_1.MR.0004.0133.2013.03.10.17.33.16.406250.165478964.IMA
DOI: 10.34810/data72/774
title: 02CO_1.MR.0004.0148.2013.03.10.17.33.16.406250.165479234.IMA
DOI: 10.5281/zenodo.5118029
title: The Ultraviolet Beach Corpus

description: The dataset for the Ultraviolet Beach Corpus, consisting of comments from online message boards. The topic of discussion is President Trump's statements about using ultraviolet light and disinfectants to treat COVID-19 during a televised White House briefing (Apr.24, 2020).
DOI: 10.5281/zenodo.5118028
title: The Ultraviolet Beach Corpus

description: The dataset for the Ultraviolet Beach Corpus, consisting of comments from online message boards. The topic of discussion is President Trump's statements about using ultraviolet light and disinfectants to treat COVID-19 during a televised White House briefing (Apr.24, 2020).
DOI: 10.34810/data72/775
title: 02CO_1.MR.0004.0185.2013.03.10.17.33.16.406250.165479907.IMA
DOI: 10.34810/data72/776
title: 02CO_1.MR.0004.0013.2013.03.10.17.33.16.406250.165476804.IMA
DOI: 10.34810/data72/777
title: 02CO_1.MR.0004.0238.2013.03.10.17.33.16.406250.165480861.IMA
DOI: 10.34810/data72/778
title: 02CO_1.MR.0004.0096.2013.03.10.17.33.16.406250.165478298.IMA
DOI: 10.34810/data72/779
title: 02CO_1.MR.0004.0109.2013.03.10.17.33.16.406250.165478532.IMA
DOI: 10.34810/data72/780
title: 02CO_1.MR.0004.0041.2013.03.10.17.33.16.406250.165477308.IMA
DOI: 10.6084/m9.figshare.12471461
title: Supplementary data for Knight et al. eLife 2021;10:e64325

description: 1. Supplementary File 1 (Summary data; MLST, pangenome, taxonomy, GWAS, toxins)<br> 2. Supplementary File 2 (Global MLST tree file, manuscript Figure 2) <br><br> 3. Supplementary File 3 (BEAST tree file, manuscript Figure 4)<br> 4. Supplementary File 4 (BactDating tree file, manuscript Figure 4)<br>5. Supplementary File 5 Genome assemblies for final 260 ST dataset (gff format)
DOI: 10.6084/m9.figshare.12471461.v17
title: Supplementary data for Knight et al. eLife 2021;10:e64325

description: 1. Supplementary File 1 (Summary data; MLST, pangenome, taxonomy, GWAS, toxins)<br> 2. Supplementary File 2 (Global MLST tree file, manuscript Figure 2) <br><br> 3. Supplementary File 3 (BEAST tree file, manuscript Figure 4)<br> 4. Supplementary File 4 (BactDating tree file, manuscript Figure 4)<br>5. Supplementary File 5 Genome assemblies for final 260 ST dataset (gff format)
DOI: 10.34810/data72/781
title: 02CO_1.MR.0004.0214.2013.03.10.17.33.16.406250.165480429.IMA
DOI: 10.6084/m9.figshare.15026425
title: Additional file 2 of Molecular profiling of basal cell carcinomas in young patients

description: Additional file 2: Appendix 2. Identified variants and patients’ characteristics. Tier I: variants with strong clinical significance, Tier II: variants with potential clinical significance, I: Infiltrative, U: Undetermined, N: Nodular, S: Superficial, Pi: Pigmented, M: Man, W: Woman, -: Not found in gnomAD, numbers in gnomAD represent to frequencies of each variant if found in this database.
DOI: 10.6084/m9.figshare.15026425.v1
title: Additional file 2 of Molecular profiling of basal cell carcinomas in young patients

description: Additional file 2: Appendix 2. Identified variants and patients’ characteristics. Tier I: variants with strong clinical significance, Tier II: variants with potential clinical significance, I: Infiltrative, U: Undetermined, N: Nodular, S: Superficial, Pi: Pigmented, M: Man, W: Woman, -: Not found in gnomAD, numbers in gnomAD represent to frequencies of each variant if found in this database.
DOI: 10.6084/m9.figshare.14526260
title: Additional file 3 of Prognostic value of the C-reactive protein to albumin ratio in colorectal cancer: an updated systematic review and meta-analysis

description: Additional file 3: Table S1. The confounding factors extracted from studies investigating pre-treatment C-reactive protein to albumin ratio on survival in colorectal cancer patients
DOI: 10.6084/m9.figshare.14526266.v1
title: Additional file 5 of Prognostic value of the C-reactive protein to albumin ratio in colorectal cancer: an updated systematic review and meta-analysis

description: Additional file 5: Table S3. The detail of retrieving clinicao-pathology factors associated with high pre-treatment CAR
DOI: 10.6084/m9.figshare.14526260.v1
title: Additional file 3 of Prognostic value of the C-reactive protein to albumin ratio in colorectal cancer: an updated systematic review and meta-analysis

description: Additional file 3: Table S1. The confounding factors extracted from studies investigating pre-treatment C-reactive protein to albumin ratio on survival in colorectal cancer patients
DOI: 10.6084/m9.figshare.14526263.v1
title: Additional file 4 of Prognostic value of the C-reactive protein to albumin ratio in colorectal cancer: an updated systematic review and meta-analysis

description: Additional file 4: Table S2. Scores of the eligible studies according to the Newcastle-Ottawa Scale
DOI: 10.6084/m9.figshare.14526263
title: Additional file 4 of Prognostic value of the C-reactive protein to albumin ratio in colorectal cancer: an updated systematic review and meta-analysis

description: Additional file 4: Table S2. Scores of the eligible studies according to the Newcastle-Ottawa Scale
DOI: 10.6084/m9.figshare.14526266
title: Additional file 5 of Prognostic value of the C-reactive protein to albumin ratio in colorectal cancer: an updated systematic review and meta-analysis

description: Additional file 5: Table S3. The detail of retrieving clinicao-pathology factors associated with high pre-treatment CAR
DOI: 10.6084/m9.figshare.14526278
title: Additional file 1 of Effects of an interprofessional Quality Circle-Deprescribing Module (QC-DeMo) in Swiss nursing homes: a randomised controlled trial

description: Additional file 1. List of ATC codes considered PIMs.
DOI: 10.6084/m9.figshare.14526278.v1
title: Additional file 1 of Effects of an interprofessional Quality Circle-Deprescribing Module (QC-DeMo) in Swiss nursing homes: a randomised controlled trial

description: Additional file 1. List of ATC codes considered PIMs.
DOI: 10.6084/m9.figshare.14526537.v1
title: Additional file 2 of Heart rate detection properties of dry-electrode ECG compared to conventional 3-lead gel-electrode ECG in newborns

description: Additional file 2. Heart rate data pairs from the two devices by the two observers.
DOI: 10.6084/m9.figshare.14526537
title: Additional file 2 of Heart rate detection properties of dry-electrode ECG compared to conventional 3-lead gel-electrode ECG in newborns

description: Additional file 2. Heart rate data pairs from the two devices by the two observers.
DOI: 10.6084/m9.figshare.14527697.v1
title: Additional file 1 of Connecting the Dots: a cluster-randomized clinical trial integrating standardized autism spectrum disorders screening, high-quality treatment, and long-term outcomes

description: Additional file 1. SPIRIT Checklist.
DOI: 10.6084/m9.figshare.14527697
title: Additional file 1 of Connecting the Dots: a cluster-randomized clinical trial integrating standardized autism spectrum disorders screening, high-quality treatment, and long-term outcomes

description: Additional file 1. SPIRIT Checklist.
DOI: 10.25934/00006816.0
title: Available IPD datapackage for study 'A Multicenter, Randomized, Double-blind, Placebo-controlled, Parallel-group Study To Evaluate The Efficacy, Safety And Tolerability Of Desvenlafaxine Succinate Sustained-release (Dvs Sr) In The Treatment Of Children And Adolescent Outpatients With Major Depressive Disorder'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00006816.1
title: IPD datapackage for study 'A Multicenter, Randomized, Double-blind, Placebo-controlled, Parallel-group Study To Evaluate The Efficacy, Safety And Tolerability Of Desvenlafaxine Succinate Sustained-release (Dvs Sr) In The Treatment Of Children And Adolescent Outpatients With Major Depressive Disorder' and research request: 'Efficacy of serotonin reuptake inhibitors in children and adolescents'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00007075
title: Efficacy of serotonin reuptake inhibitors in children and adolescents

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.15026502.v1
title: Additional file 3 of Genome-wide association mapping reveals new loci associated with light-colored seed coat at harvest and slow darkening in carioca beans

description: Additional file 3: Table S2. Genes positioned within the confidence interval of each significant SNP for association mapping of the HL, L30, and ΔL* traits, as well as the genetic annotation of each gene identified.
DOI: 10.6084/m9.figshare.15026505.v1
title: Additional file 4 of Genome-wide association mapping reveals new loci associated with light-colored seed coat at harvest and slow darkening in carioca beans

description: Additional file 4: Table 3S. Bayesian Information Criterion (BIC) test according to Schwarz [63], for all traits evaluated using the first five components of the principal component analysis.
DOI: 10.6084/m9.figshare.15026499
title: Additional file 2 of Genome-wide association mapping reveals new loci associated with light-colored seed coat at harvest and slow darkening in carioca beans

description: Additional file 2: Table S1. Cultivar name, grain size (mm), commercial classification, institution of origin, genealogy, adjusted phenotypic mean (BLUE) for lightness at harvest and tolerance to PHD, and genotypic matrix for the 138 carioca common bean genotypes of the carioca diversity panel (CDP).
DOI: 10.6084/m9.figshare.15026502
title: Additional file 3 of Genome-wide association mapping reveals new loci associated with light-colored seed coat at harvest and slow darkening in carioca beans

description: Additional file 3: Table S2. Genes positioned within the confidence interval of each significant SNP for association mapping of the HL, L30, and ΔL* traits, as well as the genetic annotation of each gene identified.
DOI: 10.6084/m9.figshare.15026505
title: Additional file 4 of Genome-wide association mapping reveals new loci associated with light-colored seed coat at harvest and slow darkening in carioca beans

description: Additional file 4: Table 3S. Bayesian Information Criterion (BIC) test according to Schwarz [63], for all traits evaluated using the first five components of the principal component analysis.
DOI: 10.6084/m9.figshare.15026499.v1
title: Additional file 2 of Genome-wide association mapping reveals new loci associated with light-colored seed coat at harvest and slow darkening in carioca beans

description: Additional file 2: Table S1. Cultivar name, grain size (mm), commercial classification, institution of origin, genealogy, adjusted phenotypic mean (BLUE) for lightness at harvest and tolerance to PHD, and genotypic matrix for the 138 carioca common bean genotypes of the carioca diversity panel (CDP).
DOI: 10.5517/ccdc.csd.cc2092xb
title: CCDC 1855781: Experimental Crystal Structure Determination

description: Related Article: Vladislav A. Tuskaev, Svetlana Ch. Gagieva, Dmitry A. Kurmaev, Sergey V. Zubkevich, Ivan V. Fedyanin, Mikhail I. Buzin, Galina G. Nikiforova, Viktor G. Vasil’ev, Daniele Saracheno, Viktor I. Privalov, Boris M. Bulychev|2020|Polym.Bull.|78|4355|doi:10.1007/s00289-020-03322-0
DOI: 10.5517/ccdc.csd.cc2092zd
title: CCDC 1855783: Experimental Crystal Structure Determination

description: Related Article: Vladislav A. Tuskaev, Svetlana Ch. Gagieva, Dmitry A. Kurmaev, Sergey V. Zubkevich, Ivan V. Fedyanin, Mikhail I. Buzin, Galina G. Nikiforova, Viktor G. Vasil’ev, Daniele Saracheno, Viktor I. Privalov, Boris M. Bulychev|2020|Polym.Bull.|78|4355|doi:10.1007/s00289-020-03322-0
DOI: 10.5517/ccdc.csd.cc2092yc
title: CCDC 1855782: Experimental Crystal Structure Determination

description: Related Article: Vladislav A. Tuskaev, Svetlana Ch. Gagieva, Dmitry A. Kurmaev, Sergey V. Zubkevich, Ivan V. Fedyanin, Mikhail I. Buzin, Galina G. Nikiforova, Viktor G. Vasil’ev, Daniele Saracheno, Viktor I. Privalov, Boris M. Bulychev|2020|Polym.Bull.|78|4355|doi:10.1007/s00289-020-03322-0
DOI: 10.5517/ccdc.csd.cc24mc27
title: CCDC 1984808: Experimental Crystal Structure Determination

description: Related Article: Samaneh Vaseghi, Saeed Emami, Mohamad Shokerzadeh, Zinatossadat Hossaini, Mohamad Yousefi|2021|J.Mol.Struct.|1244|130926|doi:10.1016/j.molstruc.2021.130926
DOI: 10.34810/data72/782
title: 02CO_1.MR.0004.0044.2013.03.10.17.33.16.406250.165477362.IMA
DOI: 10.6084/m9.figshare.14526546.v1
title: Additional file 1 of Association of Cardiovascular Risk Factors and Metabolic Syndrome with non-alcoholic and alcoholic fatty liver disease: a retrospective analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.14526546
title: Additional file 1 of Association of Cardiovascular Risk Factors and Metabolic Syndrome with non-alcoholic and alcoholic fatty liver disease: a retrospective analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.15026545
title: Additional file 4 of Sequence-based genome-wide association study of individual milk mid-infrared wavenumbers in mixed-breed dairy cattle

description: Additional file 4: Table S10. Minor allele frequencies and allele effects for WGS tag variants with a significant association effect in FT-MIR wavenumbers and a co-localized eQTL. Table S11. Association statistic profiles for 38 loci with a co-localized eQTL for at least one FT-MIR wavenumber phenotype. The proportion of phenotypic and genetic variance accounted for by each locus is shown for each of the 895 FT-MIR wavenumber and three FT-MIR predicted milk composition phenotypes. The genetic variance for each phenotype is the SNP-based estimate evaluated by the Bolt-LMM software. Table S12. Chronological profiles across iterations for 19 significant association effects with a co-localized eQTL observed in FT-MIR wavenumbers, where the association is observed after fitting the top chromosomal variant(s) in previous GWAS iterations and/or the base GWAS as covariates. Iterations are defined relative to the base GWAS, with the base GWAS represented as iteration 0. P-values at previous iterations for the phenotype, and p-values for the corresponding top chromosomal SNP in that iteration are provided. Table S13. Minor allele frequencies and allele effects for WGS tag variants with a significant association effect in at least one FT-MIR predicted milk composition trait and a co-localized eQTL. FP = Fat %; LP = Lactose %; PP = Protein %. Table S14. Chronological profiles across iterations for 12 significant association effects with a co-localized eQTL observed in FT-MIR predicted milk composition traits, where the association is observed after fitting the top chromosomal variant(s) in previous GWAS iterations and/or the base GWAS as covariates. Iterations are defined relative to the base GWAS, with the base GWAS represented as iteration 0. P-values at previous iterations for the phenotype, and p-values for the corresponding top chromosomal SNP in that iteration have been provided. FP = Fat %; LP = Lactose %; PP = Protein %.
DOI: 10.6084/m9.figshare.15026545.v1
title: Additional file 4 of Sequence-based genome-wide association study of individual milk mid-infrared wavenumbers in mixed-breed dairy cattle

description: Additional file 4: Table S10. Minor allele frequencies and allele effects for WGS tag variants with a significant association effect in FT-MIR wavenumbers and a co-localized eQTL. Table S11. Association statistic profiles for 38 loci with a co-localized eQTL for at least one FT-MIR wavenumber phenotype. The proportion of phenotypic and genetic variance accounted for by each locus is shown for each of the 895 FT-MIR wavenumber and three FT-MIR predicted milk composition phenotypes. The genetic variance for each phenotype is the SNP-based estimate evaluated by the Bolt-LMM software. Table S12. Chronological profiles across iterations for 19 significant association effects with a co-localized eQTL observed in FT-MIR wavenumbers, where the association is observed after fitting the top chromosomal variant(s) in previous GWAS iterations and/or the base GWAS as covariates. Iterations are defined relative to the base GWAS, with the base GWAS represented as iteration 0. P-values at previous iterations for the phenotype, and p-values for the corresponding top chromosomal SNP in that iteration are provided. Table S13. Minor allele frequencies and allele effects for WGS tag variants with a significant association effect in at least one FT-MIR predicted milk composition trait and a co-localized eQTL. FP = Fat %; LP = Lactose %; PP = Protein %. Table S14. Chronological profiles across iterations for 12 significant association effects with a co-localized eQTL observed in FT-MIR predicted milk composition traits, where the association is observed after fitting the top chromosomal variant(s) in previous GWAS iterations and/or the base GWAS as covariates. Iterations are defined relative to the base GWAS, with the base GWAS represented as iteration 0. P-values at previous iterations for the phenotype, and p-values for the corresponding top chromosomal SNP in that iteration have been provided. FP = Fat %; LP = Lactose %; PP = Protein %.
DOI: 10.6084/m9.figshare.14526467
title: Additional file 1 of Tamock: simulation of habitat-specific benchmark data in metagenomics

description: Additional file 1: Supplementary Figure 1. Genome fractions for the top five Bifidobacterium strains classified in the iHMP2 stool sample J00827 (Benchmark data set) for which contigs of the genome bin 36 could by aligned are shown. The reference genome GCF_000010425.1 corresponds to Bifidobacterium adolescentis ATCC 15703 with 89.73% coverage and has been sampled 9x in the simulated sequence fraction constituting for 1.39% of all reads. The figure is produced with MetaQUAST v5.0.2 (Mikheenko et al. 2016).
DOI: 10.6084/m9.figshare.14526467.v1
title: Additional file 1 of Tamock: simulation of habitat-specific benchmark data in metagenomics

description: Additional file 1: Supplementary Figure 1. Genome fractions for the top five Bifidobacterium strains classified in the iHMP2 stool sample J00827 (Benchmark data set) for which contigs of the genome bin 36 could by aligned are shown. The reference genome GCF_000010425.1 corresponds to Bifidobacterium adolescentis ATCC 15703 with 89.73% coverage and has been sampled 9x in the simulated sequence fraction constituting for 1.39% of all reads. The figure is produced with MetaQUAST v5.0.2 (Mikheenko et al. 2016).
DOI: 10.6084/m9.figshare.14526470
title: Additional file 2 of Tamock: simulation of habitat-specific benchmark data in metagenomics

description: Additional file 2: Supplementary Figure 2. Percentage of sequence reads mapping to the respective reference genome for the top five Bifidobacterium strains classified in the iHMP2 stool sample J00827 (Benchmark data set). 1.36% of sequences mapped to the reference genome GCF_000010425.1 (Bifidobacterium adolescentis ATCC 15703) while 1.39% of sequences mapped back to genome bin 36. The figure is produced with MetaQUAST v5.0.2 (Mikheenko et al. 2016).
DOI: 10.6084/m9.figshare.14526470.v1
title: Additional file 2 of Tamock: simulation of habitat-specific benchmark data in metagenomics

description: Additional file 2: Supplementary Figure 2. Percentage of sequence reads mapping to the respective reference genome for the top five Bifidobacterium strains classified in the iHMP2 stool sample J00827 (Benchmark data set). 1.36% of sequences mapped to the reference genome GCF_000010425.1 (Bifidobacterium adolescentis ATCC 15703) while 1.39% of sequences mapped back to genome bin 36. The figure is produced with MetaQUAST v5.0.2 (Mikheenko et al. 2016).
DOI: 10.6084/m9.figshare.14526473
title: Additional file 3 of Tamock: simulation of habitat-specific benchmark data in metagenomics

description: Additional file 3: Supplementary Figure 3. The number of misassemblies for genome bin 36 compared to the top five Bifidobacterium strains classified in theiHMP2 stool sample J00827 (Benchmark data set) is shown. No misassemblies were identified for all five reference genomes. The figure is produced with MetaQUAST v5.0.2 (Mikheenko et al. 2016).
DOI: 10.6084/m9.figshare.14526473.v1
title: Additional file 3 of Tamock: simulation of habitat-specific benchmark data in metagenomics

description: Additional file 3: Supplementary Figure 3. The number of misassemblies for genome bin 36 compared to the top five Bifidobacterium strains classified in theiHMP2 stool sample J00827 (Benchmark data set) is shown. No misassemblies were identified for all five reference genomes. The figure is produced with MetaQUAST v5.0.2 (Mikheenko et al. 2016).