cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id166761.2
title: StrainInfo SI-ID 166761.2

description: StrainInfo dataset 166761 about a strain of Septoria gerberae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166762.2
title: StrainInfo SI-ID 166762.2

description: StrainInfo dataset 166762 about a strain of Septoria hippocastani. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166776.2
title: StrainInfo SI-ID 166776.2

description: StrainInfo dataset 166776 about a strain of Exserohilum holmii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166777.2
title: StrainInfo SI-ID 166777.2

description: StrainInfo dataset 166777 about a strain of Exserohilum holmii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166779.2
title: StrainInfo SI-ID 166779.2

description: StrainInfo dataset 166779 about a strain of Rhexocercosporidium carotae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.15468/dl.pwapjq
title: Occurrence Download

description: A dataset containing 357 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is USA.5_1",
 "TaxonKey is Oncorhynchus mykiss irideus (Gibbons, 1855)"
 ]
}

 The dataset includes 357 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004350-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id166783.2
title: StrainInfo SI-ID 166783.2

description: StrainInfo dataset 166783 about a strain of Coniochaeta ligniaria. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166791.2
title: StrainInfo SI-ID 166791.2

description: StrainInfo dataset 166791 about a strain of Cladophialophora arxii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166792.2
title: StrainInfo SI-ID 166792.2

description: StrainInfo dataset 166792 about a strain of Fusarium equiseti. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166803.2
title: StrainInfo SI-ID 166803.2

description: StrainInfo dataset 166803 about a strain of Arthrobotrys psychrophilus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166813.2
title: StrainInfo SI-ID 166813.2

description: StrainInfo dataset 166813 about a strain of Orbilia brochopaga. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166831.2
title: StrainInfo SI-ID 166831.2

description: StrainInfo dataset 166831 about a strain of Pezicula carpinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166834.2
title: StrainInfo SI-ID 166834.2

description: StrainInfo dataset 166834 about a strain of Ceratocystiopsis brevicomis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166839.2
title: StrainInfo SI-ID 166839.2

description: StrainInfo dataset 166839 about a strain of Trametes suaveolens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166848.2
title: StrainInfo SI-ID 166848.2

description: StrainInfo dataset 166848 about a strain of Trichophyton violaceum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166849.2
title: StrainInfo SI-ID 166849.2

description: StrainInfo dataset 166849 about a strain of Trichophyton violaceum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166852.2
title: StrainInfo SI-ID 166852.2

description: StrainInfo dataset 166852 about a strain of Vararia ochroleuca. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166861.2
title: StrainInfo SI-ID 166861.2

description: StrainInfo dataset 166861 about a strain of Venturia inaequalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.15468/dl.k6n949
title: Occurrence Download

description: A dataset containing 32809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Bromus erectus Huds.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 32809 records from 166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004326-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id166863.2
title: StrainInfo SI-ID 166863.2

description: StrainInfo dataset 166863 about a strain of Venturia minuta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166868.2
title: StrainInfo SI-ID 166868.2

description: StrainInfo dataset 166868 about a strain of Didymocrea sadasivanii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166872.2
title: StrainInfo SI-ID 166872.2

description: StrainInfo dataset 166872 about a strain of Clonostachys rosea f. catenulata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166873.2
title: StrainInfo SI-ID 166873.2

description: StrainInfo dataset 166873 about a strain of Mucor moelleri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166874.2
title: StrainInfo SI-ID 166874.2

description: StrainInfo dataset 166874 about a strain of Tuberculina maxima. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166876.2
title: StrainInfo SI-ID 166876.2

description: StrainInfo dataset 166876 about a strain of Trichophyton simii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166877.2
title: StrainInfo SI-ID 166877.2

description: StrainInfo dataset 166877 about a strain of Nannizzia lorica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166879.2
title: StrainInfo SI-ID 166879.2

description: StrainInfo dataset 166879 about a strain of Spizellomyces sp. 'palustris'. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166884.2
title: StrainInfo SI-ID 166884.2

description: StrainInfo dataset 166884 about a strain of Aspergillus peyronelii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166895.2
title: StrainInfo SI-ID 166895.2

description: StrainInfo dataset 166895 about a strain of Diaporthe helianthi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166896.2
title: StrainInfo SI-ID 166896.2

description: StrainInfo dataset 166896 about a strain of Diaporthe eres. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166898.2
title: StrainInfo SI-ID 166898.2

description: StrainInfo dataset 166898 about a strain of Corniculantispora psalliotae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166906.2
title: StrainInfo SI-ID 166906.2

description: StrainInfo dataset 166906 about a strain of Arthopyrenia salicis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.34740/kaggle/dsv/10911990
title: BOS Kemdikbud
DOI: 10.60712/si-id166911.2
title: StrainInfo SI-ID 166911.2

description: StrainInfo dataset 166911 about a strain of Magnusiomyces suaveolens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166912.2
title: StrainInfo SI-ID 166912.2

description: StrainInfo dataset 166912 about a strain of Seiridium papillatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166914.2
title: StrainInfo SI-ID 166914.2

description: StrainInfo dataset 166914 about a strain of Harknessia eucalypti. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166915.2
title: StrainInfo SI-ID 166915.2

description: StrainInfo dataset 166915 about a strain of Seiridium eucalypti. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166916.2
title: StrainInfo SI-ID 166916.2

description: StrainInfo dataset 166916 about a strain of Phloeospora ulmi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166917.2
title: StrainInfo SI-ID 166917.2

description: StrainInfo dataset 166917 about a strain of Didymella macrostoma. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166918.2
title: StrainInfo SI-ID 166918.2

description: StrainInfo dataset 166918 about a strain of Absidia nigra. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166923.2
title: StrainInfo SI-ID 166923.2

description: StrainInfo dataset 166923 about a strain of Coniosporium apollinis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166924.2
title: StrainInfo SI-ID 166924.2

description: StrainInfo dataset 166924 about a strain of Endomelanconiopsis microspora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166928.2
title: StrainInfo SI-ID 166928.2

description: StrainInfo dataset 166928 about a strain of Trichoderma viride. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166929.2
title: StrainInfo SI-ID 166929.2

description: StrainInfo dataset 166929 about a strain of Tilachlidium brachiatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166932.2
title: StrainInfo SI-ID 166932.2

description: StrainInfo dataset 166932 about a strain of Fusicoccum quercus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166936.2
title: StrainInfo SI-ID 166936.2

description: StrainInfo dataset 166936 about a strain of Orbilia brochopaga. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166941.2
title: StrainInfo SI-ID 166941.2

description: StrainInfo dataset 166941 about a strain of Thermothelomyces thermophilus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166942.2
title: StrainInfo SI-ID 166942.2

description: StrainInfo dataset 166942 about a strain of Xenomeris raetica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166958.2
title: StrainInfo SI-ID 166958.2

description: StrainInfo dataset 166958 about a strain of Lyomyces crustosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166959.2
title: StrainInfo SI-ID 166959.2

description: StrainInfo dataset 166959 about a strain of Lyomyces crustosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166960.2
title: StrainInfo SI-ID 166960.2

description: StrainInfo dataset 166960 about a strain of Lyomyces crustosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166961.2
title: StrainInfo SI-ID 166961.2

description: StrainInfo dataset 166961 about a strain of Xylodon papillosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166962.2
title: StrainInfo SI-ID 166962.2

description: StrainInfo dataset 166962 about a strain of Xylodon papillosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166963.2
title: StrainInfo SI-ID 166963.2

description: StrainInfo dataset 166963 about a strain of Xylodon papillosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.5281/zenodo.14963105
title: Dynamics and structural responses to cis-trans isomerization in bacterial lipid bilayers

description: Input structures for a manuscript, along with selected output data and structures. This directory structure contains a cut-down copy of the directories used to generate the simulation data and the analysis. In order to make this fit into the 50GB Zenodo limit, it was constructed with the following tar command: tar -zcvf cis-trans-membrane.tar.gz --exclude="*BAK" --exclude="*#" --exclude="*log" --exclude="*xsc" --exclude="*coor" --exclude="*vel" --exclude="*[0-9].out" --exclude="*old" --exclude="*dcd" --exclude="*tmp" --exclude="*ppm" --exclude="*png" --exclude="*pdf"  --exclude="*catchy*" --exclude="*svg" --exclude="*restart*" --exclude="*history" --exclude="core.*" --exclude="FFTW_NAMD*" --exclude="*avi" --exclude="*mp4"  --exclude="pressureprofile" --exclude="pressureprofile-npt" --exclude="pressureprofile-npt-iccer" --exclude="joshfiles" cis-trans-membrane which intentionally excludes large files. The full dataset that includes trajectories is available upon request.

The data is split into two directories initially "analysis" and "gen_mem"



analysis folder contains all the different analysis and ploting scripts used in the manuscript

gen_mem folder contains all the scripts for building the system and running the NAMD equilibration simulation and the lateral pressure profile simulation.
DOI: 10.5281/zenodo.14963106
title: Dynamics and structural responses to cis-trans isomerization in bacterial lipid bilayers

description: Input structures for a manuscript, along with selected output data and structures. This directory structure contains a cut-down copy of the directories used to generate the simulation data and the analysis. In order to make this fit into the 50GB Zenodo limit, it was constructed with the following tar command: tar -zcvf cis-trans-membrane.tar.gz --exclude="*BAK" --exclude="*#" --exclude="*log" --exclude="*xsc" --exclude="*coor" --exclude="*vel" --exclude="*[0-9].out" --exclude="*old" --exclude="*dcd" --exclude="*tmp" --exclude="*ppm" --exclude="*png" --exclude="*pdf"  --exclude="*catchy*" --exclude="*svg" --exclude="*restart*" --exclude="*history" --exclude="core.*" --exclude="FFTW_NAMD*" --exclude="*avi" --exclude="*mp4"  --exclude="pressureprofile" --exclude="pressureprofile-npt" --exclude="pressureprofile-npt-iccer" --exclude="joshfiles" cis-trans-membrane which intentionally excludes large files. The full dataset that includes trajectories is available upon request.

The data is split into two directories initially "analysis" and "gen_mem"



analysis folder contains all the different analysis and ploting scripts used in the manuscript

gen_mem folder contains all the scripts for building the system and running the NAMD equilibration simulation and the lateral pressure profile simulation.
DOI: 10.60712/si-id166964.2
title: StrainInfo SI-ID 166964.2

description: StrainInfo dataset 166964 about a strain of Xylodon papillosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166965.2
title: StrainInfo SI-ID 166965.2

description: StrainInfo dataset 166965 about a strain of Xylodon papillosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166967.2
title: StrainInfo SI-ID 166967.2

description: StrainInfo dataset 166967 about a strain of Aspergillus biplanus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166968.3
title: StrainInfo SI-ID 166968.3

description: StrainInfo dataset 166968 about a strain of Aspergillus conjunctus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166969.2
title: StrainInfo SI-ID 166969.2

description: StrainInfo dataset 166969 about a strain of Aspergillus crustosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166970.3
title: StrainInfo SI-ID 166970.3

description: StrainInfo dataset 166970 about a strain of Penicillium crystallinum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166971.2
title: StrainInfo SI-ID 166971.2

description: StrainInfo dataset 166971 about a strain of Aspergillus fruticulosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166973.2
title: StrainInfo SI-ID 166973.2

description: StrainInfo dataset 166973 about a strain of Calycina parvispora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id166979.2
title: StrainInfo SI-ID 166979.2

description: StrainInfo dataset 166979 about a strain of Lareunionomyces foliicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.15468/dl.b3r4sb
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-128.70244 59.14513,-127.85744 61.03229,-138.08192 64.52495,-139.12408 59.84929,-130.4206 57.87763,-128.70244 59.14513))",
 "TaxonKey is Monopelopia tenuicalcar (Kieffer, 1918)"
 ]
}

 The dataset includes 54 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004327-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id166985.2
title: StrainInfo SI-ID 166985.2

description: StrainInfo dataset 166985 about a strain of Scolecobasidium fusarioideum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.