cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2010249.v1
title: Restoring functionally diverse communities enhances invasion resistance in wetlands

description: 1. Understanding community reassembly and diversity interactions is particularly relevant when plant invaders are part of the assembly pool and can compromise restoration goals. If initial species composition has a lasting effect on community structure, manipulating the assembly pool could help increase biotic resistance to invasion.<br>2. We conducted a large plant community restoration experiment in a wetland under high propagule pressure from Phragmites australis (common reed) and investigated species and functional diversity effects of the restored communities on biotic resistance during early assembly using a diversity-interaction model framework. Functional groups differed mostly in life longevity and canopy height and flooding condition was incorporated in all models.<br>3. Experimental assemblages were invaded by 20 exotic or native species including P. australis and two woody taxa (Salix sp., Populus deltoides). Increasing species and functional group richness of the restored communities generally reduced invaders abundance. <br>4. Functional diversity effects were explained by functional group identity (selection effect) and pairwise group interactions (complementarity effect) but, interestingly, their relative contribution varied with invaders. Functional group interactions determined overall community invasibility, whereas functional identity was important against specific invaders. <br>5. The strong performance of fast-growing annuals against seed invasion of P. australis emphasized priority effect. Flooding contributed to reduce invaders abundance except for P. australis.<br>6. Synthesis and applications. Understanding the circumstances under which diversity effects of restored communities prevail can inform ecological applications. Wetlands are highly susceptible to invasion and wetland restoration is a major issue worldwide. This is one of the few tests of the diversity-invasibility relationship in wetlands and one of the first quantifying the relative contribution of complementarity-diversity effect and selection effect to invasion resistance under fluctuating environmental conditions. <br><br>
DOI: 10.6084/m9.figshare.4042764.v2
title: Hedging Activities Information and Risk Management Committee Effectiveness: Malaysia Evidence

description: <i>This study examines the extent of information about hedging activities disclosures within the annual reports of Main Market companies listed on Bursa Malaysia. The extent of hedging activities disclosures is captured through a 32-item-template, which consists of a mandatory and voluntary disclosure scores. The results of this study indicate that the extent of information on hedging activities disclosure is still insufficient among the sampled companies even though the disclosure scored is quite high. This study also examines the relationship between the existence of risk management committee (RMC), its characteristics and the extent of information on hedging activities disclosure in two separate statistical models. The regression results imply that the existence of RMC is positive but does not significantly influence the extent of information on hedging activities disclosure. However its characteristics (i.e. RMC independence and RMC meeting) have a significant influence. </i><i>The findings may provide some meaningful insights to regulators, policymakers and researchers, towards the establishment of RMC as a part of the internal corporate governance mechanisms. In addition to its existence, the effectiveness of RMC also needs to be emphasized.</i><i></i>
DOI: 10.6084/m9.figshare.3761562.v1438
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1437
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.8796320.v2
title: Reconstructing draft genomes using genome-resolved meta- genomics to decipher fresh water lake microbial characteristics - Junk Data

description: We have taken water sample during winter and rainy season from Rabindra sarovar lake located at south kolkata and did metagenomic analysis. For metagenome analysis we followed genome resolved metagenomics approach. In this method samples are assembled after sequencing, then assembled samples are binned using binning tool a total of 113 bins are reconstructed across the seasons out of which 27 bins are selected after refinement and der-eplication followed by quality assesment i.e completeness &gt;= 50% and contamination &lt;=10 % (CheckM analysis) . 27 bins are already uploaded in figshare under title "<b>Reconstructing draft genomes using genome-resolved meta- genomics to decipher fresh water lake microbial characteristics -Main Data</b>" and rest 86 bins (.fa) are deposited under title <b>"Reconstructing draft genomes using genome-resolved meta- genomics to decipher fresh water lake microbial characteristics - Junk Data"</b><br>
DOI: 10.6084/m9.figshare.8796320.v1
title: Reconstructing draft genomes using genome-resolved meta- genomics to decipher fresh water lake microbial characteristics - Junk Data

description: We have taken water sample during winter and rainy season from Rabindra sarovar lake located at south kolkata and did metagenomic analysis. For metagenome analysis we followed genome resolved metagenomics approach. In this method samples are assembled after sequencing, then assembled samples are binned using binning tool a total of 119 bins are reconstruct across the seasons out of which 18 bins are selected based on quality i.e completeness &gt; 75% and contamination &lt;6 % (CheckM analysis). 18 bins are already uploaded in figshare under title "<b>Reconstructing draft genomes using genome-resolved meta- genomics to decipher fresh water lake microbial characteristics</b>" and rest 101 bins are deposited under title <b>"Reconstructing draft genomes using genome-resolved meta- genomics to decipher fresh water lake microbial characteristics - Junk Data"</b><br>
DOI: 10.6084/m9.figshare.12073596.v1
title: South African Hospital Beds

description: These files were created from https://figshare.com/articles/SURGICAL_RESOURCES_latestmarch2016_xlsx/12066711. Hospital capacity information were extracted and tidied up. The readme explains the steps taken to go from the original data to the tidy data.<br>
DOI: 10.6084/m9.figshare.12045243.v5
title: Data on the COVID-19 outbreak in Romania

description: This dataset includes various metrics on the COVID-2019 outbreak in Romania. For a full description see the GitHub project at https://github.com/adrianp/covid19romania.<br>Main data source is the press office of the Ministry of Internal Affairs, which currently provides a daily report on most metrics. Data points are also sourced from the Romanian Ministry of Health and the Romanian National Institute of Public Health and occasionally from news outlets. The purpose is to provide a historic overview of the various figures and not live information on the pandemic.<br>A visualisation is provided, only for demonstration purposes, at https://covid19ro.com.<br>Data is updated daily; please use GitHub issues to report any problems or suggest improvements.
DOI: 10.6084/m9.figshare.12045243.v4
title: Data on the COVID-19 outbreak in Romania

description: This dataset includes various metrics on the COVID-2019 outbreak in Romania. For a full description see the GitHub project at https://github.com/adrianp/covid19romania.<br>Main data source is the press office of the Ministry of Internal Affairs, which currently provides a daily report on most metrics. Data points are also sourced from the Romanian Ministry of Health and the Romanian National Institute of Public Health and occasionally from news outlets. The purpose is to provide a historic overview of the various figures and not live information on the pandemic.<br>A visualisation is provided, only for demonstration purposes, at https://covid19ro.com.<br>Data is updated daily; please use GitHub issues to report any problems or suggest improvements.
DOI: 10.6084/m9.figshare.12086727.v1
title: Structure-based screening of chemical libraries to identify small molecules that are likely to bind with the SET and RING-associated (SRA) domain of Ubiquitin-like, PHD and Ring Finger–containing 1 (UHRF1)

description: The dataset contains MS PowerPoint files, MS Excel Lists, and Maestro Pose Viewer files (Schrodinger's Maestro software). The dataset compiles the results of a structure-based virtual screening of chemical libraries with approximately 2.4 million small molecules. The results identify the predicted top hits that are expected to bind with the SET and RING-associated (SRA) domain of Ubiquitin-like, PHD and Ring Finger–containing 1 (UHRF1).<br>
DOI: 10.6084/m9.figshare.10298093.v1
title: Alignment files

description: Mutliple sequence alignments for all genes analysed and included in the paper "Phylogenetic evidence for the reductive evolution of stomata in bryophytes". Additional genes that were analysed, but not included in the paper are also included.
DOI: 10.6084/m9.figshare.11879637.v2
title: Column Lookup Table

description: This table contains information regarding the columns found in the accompanying data citations.
DOI: 10.6084/m9.figshare.11879637.v1
title: Column Lookup Table

description: This table contains information regarding the columns found in the accompanying data citations.
DOI: 10.6084/m9.figshare.12149598.v2
title: Autoantibody dataset.xlsx

description: Autoantibody data set used in the project titled "Predicting response and toxicity to PD-1 inhibition using serum autoantibodies identified from immuno-mass spectrometry"
DOI: 10.6084/m9.figshare.12198510.v2
title: CINDy Networks from TCGA

description: Networks of CINDy interactions (between modulators and transcription factors) generated by the algorithm described here: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0109569. <br>The R objects are intended to be loaded and used in conjunction with the MOMA package here: https://bioconductor.org/packages/devel/bioc/html/MOMA.html
DOI: 10.6084/m9.figshare.12198510.v1
title: CINDy Networks from TCGA

description: Networks of CINDy interactions (between modulators and transcription factors) generated by the algorithm described here: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0109569. <br>The R objects are intended to be loaded and used in conjunction with the MOMA package here: https://bioconductor.org/packages/devel/bioc/html/MOMA.html
DOI: 10.6084/m9.figshare.12199688.v1
title: Figure 5_6_DengueCaseData

description: Data underlying Figure 5 (Dengue incidence in intervention and control areas, before and after the <i>Wolbachia </i>intervention) and Figure 6 (Laboratory-confirmed dengue cases in intervention and control areas, before and after the <i>Wolbachia </i>intervention), in Indriani et al (2020) <i>Gates Open Research (submitted)</i>. Hospitalised dengue haemorrhagic fever (DHF; since 2006) and dengue fever (DF; since 2017) cases are notified to the Yogyakarta District Health Office. Standard Diagnostics Dengue Duo rapid diagnostic kits for the detection of dengue virus NS1 antigen and IgM/IgG antibody have been used at the discretion of clinic staff as part of routine clinical care in primary care clinics throughout Yogyakarta city since March 2016.
DOI: 10.6084/m9.figshare.12202853.v2
title: Feasibility and Accuracy of Rapid On-Site Evaluation of Touch Imprint Cytology During Transbronchial Biopsy : Data sharing

description: This study is a single-center retrospective chart review of patients who underwent bronchoscopy combined with rapid on site evaluation at the Chiba University Hospital. The data show the patient's age, sex, lesion characteristics, the results of rapid on site evaluation, pathology results, final diagnosis, and gene mutation results. All analyses were performed in accordance with the amended Declaration of Helsinki. Written informed consent for bronchoscopy was obtained from each patient. Because data anonymization and privacy issues were protected and the approval for the opt-out consent method were given by the Chiba University Hospital (approval number 2584), additional informed consent for this research was waived due to the design of retrospective chart review of clinical history and diagnostic results.<br>
DOI: 10.6084/m9.figshare.12202853.v1
title: Feasibility and Accuracy of of Rapid On-Site Evaluation of Touch Imprint Cytology During Transbronchial Biopsy : Data sharing

description: This study is a single-center retrospective chart review of patients who underwent bronchoscopy combined with rapid on site evaluation at the Chiba University Hospital. The data show the patient's age, sex, lesion characteristics, the results of rapid on site evaluation, pathology results, final diagnosis, and gene mutation results. All analyses were performed in accordance with the amended Declaration of Helsinki. Written informed consent for bronchoscopy was obtained from each patient. Because data anonymization and privacy issues were protected and the approval for the opt-out consent method were given by the Chiba University Hospital (approval number 2584), additional informed consent for this research was waived due to the design of retrospective chart review of clinical history and diagnostic results.<br>
DOI: 10.6084/m9.figshare.938243.v7
title: Analysis for "Hierarchical Bayesian Models of Subtask Learning"

description: Data and code from:Anglim, J., & Wynton, S. K. (2015). Hierarchical Bayesian models of subtask learning. Journal of experimental psychology: learning, memory, and cognition, 41(4), 957-974. doi:10.1037/xlm0000103For updates see:https://github.com/jeromyanglim/anglim-wynton-2014-subtasks
DOI: 10.6084/m9.figshare.938243.v9
title: Analysis for "Hierarchical Bayesian Models of Subtask Learning"

description: Data and code from:Anglim, J., & Wynton, S. K. (2015). Hierarchical Bayesian models of subtask learning. Journal of experimental psychology: learning, memory, and cognition, 41(4), 957-974. doi:10.1037/xlm0000103<br>Archive has moved to: https://osf.io/8fx7y<br>
DOI: 10.6084/m9.figshare.938243.v8
title: Analysis for "Hierarchical Bayesian Models of Subtask Learning"

description: Data and code from:Anglim, J., & Wynton, S. K. (2015). Hierarchical Bayesian models of subtask learning. Journal of experimental psychology: learning, memory, and cognition, 41(4), 957-974. doi:10.1037/xlm0000103<br>Archive has moved to: https://osf.io/8fx7y<br>
DOI: 10.6084/m9.figshare.12203270.v2
title: Native-invasive spatial seed aggregation competition trials

description: PurposeTo explore spatial pattern, provenance, and interactions between seeds and with a mimic exotic in a controlled context.HypothesisSpatial aggregeation of seeds shifts the net outcome of native-exotic interactions.PredictionsIncreased seed aggregated increases competitive interactions intra and inter-specifically.<br>Native seeds can outcompete an invasive species at some seed aggregations.<br>One of the key effects of the invasive species brome is physical interference (tested by a mimic plant and by measuring light levels in competition).DesignTwo species tested. Phacelia tancetifolia and Bromus rubens. Greenhouse trials, full-spectrum light, 15cm pots. A total of 8 weeks experimentation, and fixed density series with replacement at 10 seeds per pot. The aggregation of seed was clumped or dispersed in sowing for each species in mixture and monocultures.
DOI: 10.6084/m9.figshare.12203270.v1
title: Native-invasive spatial seed aggregation competition trials

description: PurposeTo explore spatial pattern, provenance, and interactions between seeds and with a mimic exotic in a controlled context.HypothesisSpatial aggregeation of seeds shifts the net outcome of native-exotic interactions.PredictionsIncreased seed aggregated increases competitive interactions intra and inter-specifically.<br>Native seeds can outcompete an invasive species at some seed aggregations.<br>One of the key effects of the invasive species brome is physical interference (tested by a mimic plant and by measuring light levels in competition).DesignTwo species tested. Phacelia tancetifolia and Bromus rubens. Greenhouse trials, full-spectrum light, 15cm pots. A total of 8 weeks experimentation, and fixed density series with replacement at 10 seeds per pot. The aggregation of seed was clumped or dispersed in sowing for each species in mixture and monocultures.
DOI: 10.6084/m9.figshare.12203309.v1
title: original data of LC-qqqMS.zip

description: “Terahertz spectroscopy for the accurate identification of <i>Panax quinquefolium</i> based on non-conjugated 24(R)-pseudoginsenoside F<sub>11</sub>” (manuscript ID: 545470)-data
DOI: 10.6084/m9.figshare.12203309.v2
title: original data of LC-qqqMS.zip

description: “Terahertz spectroscopy for the accurate identification of <i>Panax quinquefolium</i> based on non-conjugated 24(R)-pseudoginsenoside F<sub>11</sub>” (manuscript ID: 545470)-data
DOI: 10.6084/m9.figshare.12203708.v1
title: Supplementary information.zip

description: The gtf and fasta files from the newly identified MSTRG lncRNAs and miRNAs
DOI: 10.6084/m9.figshare.12045243.v28
title: Data on the COVID-19 outbreak in Romania

description: This dataset includes various metrics on the COVID-2019 outbreak in Romania. For a full description see the GitHub project at https://github.com/adrianp/covid19romania.<br>Main data source is the press office of the Ministry of Internal Affairs, which currently provides a daily report on most metrics. Data points are also sourced from the Romanian Ministry of Health and the Romanian National Institute of Public Health and occasionally from news outlets. The purpose is to provide a historic overview of the various figures and not live information on the pandemic.<br>A visualisation is provided, only for demonstration purposes, at https://covid19ro.com.<br>Data is updated daily; please use GitHub issues to report any problems or suggest improvements.
DOI: 10.6084/m9.figshare.12045243.v27
title: Data on the COVID-19 outbreak in Romania

description: This dataset includes various metrics on the COVID-2019 outbreak in Romania. For a full description see the GitHub project at https://github.com/adrianp/covid19romania.<br>Main data source is the press office of the Ministry of Internal Affairs, which currently provides a daily report on most metrics. Data points are also sourced from the Romanian Ministry of Health and the Romanian National Institute of Public Health and occasionally from news outlets. The purpose is to provide a historic overview of the various figures and not live information on the pandemic.<br>A visualisation is provided, only for demonstration purposes, at https://covid19ro.com.<br>Data is updated daily; please use GitHub issues to report any problems or suggest improvements.
DOI: 10.6084/m9.figshare.11714400.v3
title: Concomitant experimental co-infection by Plasmodium berghei NK65 and Ascaris suum downregulates immunological responses and impairs lung function

description: Ascariasis and malaria are highly prevalent parasitic diseases in tropical regions and often overlap in endemic areas, contributing to high morbidity and mortality rates in areas with poor sanitary conditions. Several studies aiming to correlate the effects of Ascaris-Plasmodium coinfections have contradictory and inconclusive results. In this context, we investigated parasitological and immunopathological aspects of the lung in an experimental concomitant coinfection by Plasmodium berghei NK65-NY and Ascaris suum during larval ascariasis. The most important findings of P. berghei NK65-NY and A. suum coinfection results in Plasmodium-driven downregulation of the lung immune response that leads to an increase in larval migration in the lungs, as evidenced by the decrease in larvae recovered in the lung parenchyma and the increase in larvae recovered in the airways. This scenario is implicated in an intense hemorrhage in the airways and, consequently, in the commitment of respiratory function that results in high morbidity and early mortality. Taken together, our results suggest that this coinfection may potentiate Ascaris-associated pathology by the downmodulation of the Ascaris-specific immune response, resulting in the early death of affected animals.<br>
DOI: 10.6084/m9.figshare.11714400.v2
title: Concomitant experimental co-infection by Plasmodium berghei NK65 and Ascaris suum downregulates immunological responses and impairs lung function

description: Ascariasis and malaria are highly prevalent parasitic diseases in tropical regions and often overlap in endemic areas, contributing to high morbidity and mortality rates in areas with poor sanitary conditions. Several studies aiming to correlate the effects of Ascaris-Plasmodium coinfections have contradictory and inconclusive results. In this context, we investigated parasitological and immunopathological aspects of the lung in an experimental concomitant coinfection by Plasmodium berghei NK65-NY and Ascaris suum during larval ascariasis. The most important findings of P. berghei NK65-NY and A. suum coinfection results in Plasmodium-driven downregulation of the lung immune response that leads to an increase in larval migration in the lungs, as evidenced by the decrease in larvae recovered in the lung parenchyma and the increase in larvae recovered in the airways. This scenario is implicated in an intense hemorrhage in the airways and, consequently, in the commitment of respiratory function that results in high morbidity and early mortality. Taken together, our results suggest that this coinfection may potentiate Ascaris-associated pathology by the downmodulation of the Ascaris-specific immune response, resulting in the early death of affected animals.<br>
DOI: 10.6084/m9.figshare.12205631.v1
title: f1000 Extended data ( Phytochemistry and Phytopharmacology of 5 Medicinal Weeds)

description: extended research data
DOI: 10.6084/m9.figshare.12192027.v1
title: Data Set S3

description: Proteins identification and abundances from AN and AB cultures.
DOI: 10.6084/m9.figshare.12192189.v1
title: Data Set S1

description: qPCR raw data of<i> bssA</i>, <i>bcrC </i>and 16S rRNA from AN and AB cultures.
DOI: 10.6084/m9.figshare.12206903.v2
title: data&code.rar

description: Data and Code for the manuscript Deep, Closely-Packed, Long-Lived Cyclones on Jupiter's Poles
DOI: 10.6084/m9.figshare.12206903.v1
title: data&code.rar

description: Data and Code for the manuscript Deep, Closely-Packed, Long-Lived Cyclones on Jupiter's Poles
DOI: 10.6084/m9.figshare.12185031.v1
title: Supplementary Datasets for Adler et al., "Systematic Discovery of Salmonella Phage-Host Interactions via High-Throughput Genome-Wide Screens" (bioRxiv Initial Submission)

description: Complete Supplementary Datasets for Adler et al., "Systematic Discovery of Salmonella Phage-Host Interactions via High-Throughput Genome-Wide Screens", Submitted 2020.
DOI: 10.6084/m9.figshare.11328227.v3
title: Forest soil microbes

description: Soil microbes across eastern China
DOI: 10.6084/m9.figshare.3761562.v1470
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1469
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.