cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11805246
title: Additional file 17 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: Summary of the WGCNA modules in the leaves. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.11805252
title: Additional file 18 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: Genes strongly induced by the WD in the roots and the shoot of RM. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.11805252.v1
title: Additional file 18 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: Genes strongly induced by the WD in the roots and the shoot of RM. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.11805240
title: Additional file 16 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: Gene module membership in the leaf samples. (XLSX 34506 kb)
DOI: 10.6084/m9.figshare.11805246.v1
title: Additional file 17 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: Summary of the WGCNA modules in the leaves. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.11805240.v1
title: Additional file 16 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: Gene module membership in the leaf samples. (XLSX 34506 kb)
DOI: 10.6084/m9.figshare.11805228
title: Additional file 14 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: Summary of the WGCNA modules in the roots. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.11805228.v1
title: Additional file 14 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: Summary of the WGCNA modules in the roots. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.11805216
title: Additional file 13 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: Gene module membership in the root samples. (XLSX 45939 kb)
DOI: 10.6084/m9.figshare.11805213
title: Additional file 12 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: DEA and TPM values for the MIP family genes from comparison results between drought treated and control vines for each organ x week x genotype combinations. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.11805216.v1
title: Additional file 13 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: Gene module membership in the root samples. (XLSX 45939 kb)
DOI: 10.6084/m9.figshare.11805213.v1
title: Additional file 12 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: DEA and TPM values for the MIP family genes from comparison results between drought treated and control vines for each organ x week x genotype combinations. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.11805198
title: Additional file 10 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: DEA and TPM values for the ABA related genes from comparison results between drought treated and control vines for each organ x week x genotype combination. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.11805198.v1
title: Additional file 10 of Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

description: DEA and TPM values for the ABA related genes from comparison results between drought treated and control vines for each organ x week x genotype combination. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.11805138
title: Additional file 8 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting

description: Additional file 8 Variants and validation for dataset AML-1 (MS Excel)
DOI: 10.6084/m9.figshare.11805138.v1
title: Additional file 8 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting

description: Additional file 8 Variants and validation for dataset AML-1 (MS Excel)
DOI: 10.6084/m9.figshare.11805132
title: Additional file 4 of Cancer/testis antigens expression during cultivation of melanoma and soft tissue sarcoma cells

description: Additional file 4. Study dataset with clusters highlighted by colors.
DOI: 10.6084/m9.figshare.11805129
title: Additional file 7 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting

description: Additional file 7 Variant calling results from dataset AML-1 (MS Excel)
DOI: 10.6084/m9.figshare.11805132.v1
title: Additional file 4 of Cancer/testis antigens expression during cultivation of melanoma and soft tissue sarcoma cells

description: Additional file 4. Study dataset with clusters highlighted by colors.
DOI: 10.6084/m9.figshare.11805129.v1
title: Additional file 7 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting

description: Additional file 7 Variant calling results from dataset AML-1 (MS Excel)
DOI: 10.6084/m9.figshare.11805120
title: Additional file 6 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting

description: Additional file 6 Variant calling results from dataset MDS-2 (MS Excel)
DOI: 10.6084/m9.figshare.11805114
title: Additional file 5 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting

description: Additional file 5 Variant calling results from dataset MDS-1 (MS Excel)
DOI: 10.6084/m9.figshare.11805120.v1
title: Additional file 6 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting

description: Additional file 6 Variant calling results from dataset MDS-2 (MS Excel)
DOI: 10.6084/m9.figshare.11805114.v1
title: Additional file 5 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting

description: Additional file 5 Variant calling results from dataset MDS-1 (MS Excel)
DOI: 10.6084/m9.figshare.11805108
title: Additional file 4 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting

description: Additional file 4 AMLVaran’s default variant scoring and filter scheme which resembles the appreci8 algorithm.
DOI: 10.6084/m9.figshare.11805108.v1
title: Additional file 4 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting

description: Additional file 4 AMLVaran’s default variant scoring and filter scheme which resembles the appreci8 algorithm.
DOI: 10.6084/m9.figshare.11805042
title: Additional file 3 of LUMI-PCR: an Illumina platform ligation-mediated PCR protocol for integration site cloning, provides molecular quantitation of integration sites

description: Additional file 3: Protocol files for each step of the LUMI-PCR protocol using a Beckman Biomek workstation.
DOI: 10.6084/m9.figshare.11805036
title: Additional file 2 of LUMI-PCR: an Illumina platform ligation-mediated PCR protocol for integration site cloning, provides molecular quantitation of integration sites

description: Additional file 2: Table S3. The additional excel spreadsheet contains primer sequences, adapter sequences and example sample sheets.
DOI: 10.6084/m9.figshare.11805036.v1
title: Additional file 2 of LUMI-PCR: an Illumina platform ligation-mediated PCR protocol for integration site cloning, provides molecular quantitation of integration sites

description: Additional file 2: Table S3. The additional excel spreadsheet contains primer sequences, adapter sequences and example sample sheets.
DOI: 10.6084/m9.figshare.11804985
title: Additional file 2 of Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice

description: Additional file 2: Table S1. Inversion detect by sniffles in the Nipponbare reference genome. Table S2. The 78 circum-basmati samples with Illumina sequencing result used in this study. Table S3. Names of the Basmati 334 and Dom Sufid genome gene models that had a deletion frequency of zero across the population. Table S4. Names of the Basmati 334 and Dom Sufid genome gene models that had a deletion frequency of above 0.3 and omitted from down stream analysis. Table S5. Orthogroup status for the Basmati 334, Dom Sufid, R498, Nipponbare, and N22 genome gene models. Table S6. Count and repeat types of the presence-absence variation (PAV) in the Basmati 334 or Dom Sufid genome in comparison to the Nipponbare genome. Table S7. Gene ontology results for orthogroups where gene members from the circum-basmati are missing. Table S8. Gene ontology results for orthogroups where gene members from circum-aus, indica, and japonica are missing. Table S9. Population frequency across the 78 circum-basmati samples for orthogroups that were specifically missing a gene in the Basmati 334 and Dom Sufid genome gene models. Table S10. Genome coordinates of the LTR retrotransposons of the Basmati 334 genomes. Table S11. Genome coordinates of the LTR retrotransposons of the Dom Sufid genomes. Table S12. Genome coordinates of the Gypsy elements indicated with a single star in Fig. 3. Table S13. Genome coordinates of the Copia elements indicated with a single star in Fig. 3. Table S14. Genome coordinates of the Gypsy elements indicated with a double star in Fig. 3. Table S15. Genome coordinates of the Copia elements indicated with a triple star in Fig. 3. Table S16. The 82 Oryza population samples with Illumina sequencing result used in this study. Table S17. a i parameter estimates for the 13 different demographic models. See Additional file 1: Figure S9 for visualization of the estimating parameters.
DOI: 10.6084/m9.figshare.11804985.v1
title: Additional file 2 of Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice

description: Additional file 2: Table S1. Inversion detect by sniffles in the Nipponbare reference genome. Table S2. The 78 circum-basmati samples with Illumina sequencing result used in this study. Table S3. Names of the Basmati 334 and Dom Sufid genome gene models that had a deletion frequency of zero across the population. Table S4. Names of the Basmati 334 and Dom Sufid genome gene models that had a deletion frequency of above 0.3 and omitted from down stream analysis. Table S5. Orthogroup status for the Basmati 334, Dom Sufid, R498, Nipponbare, and N22 genome gene models. Table S6. Count and repeat types of the presence-absence variation (PAV) in the Basmati 334 or Dom Sufid genome in comparison to the Nipponbare genome. Table S7. Gene ontology results for orthogroups where gene members from the circum-basmati are missing. Table S8. Gene ontology results for orthogroups where gene members from circum-aus, indica, and japonica are missing. Table S9. Population frequency across the 78 circum-basmati samples for orthogroups that were specifically missing a gene in the Basmati 334 and Dom Sufid genome gene models. Table S10. Genome coordinates of the LTR retrotransposons of the Basmati 334 genomes. Table S11. Genome coordinates of the LTR retrotransposons of the Dom Sufid genomes. Table S12. Genome coordinates of the Gypsy elements indicated with a single star in Fig. 3. Table S13. Genome coordinates of the Copia elements indicated with a single star in Fig. 3. Table S14. Genome coordinates of the Gypsy elements indicated with a double star in Fig. 3. Table S15. Genome coordinates of the Copia elements indicated with a triple star in Fig. 3. Table S16. The 82 Oryza population samples with Illumina sequencing result used in this study. Table S17. a i parameter estimates for the 13 different demographic models. See Additional file 1: Figure S9 for visualization of the estimating parameters.
DOI: 10.6084/m9.figshare.11804949
title: Single participant data

description: This data from a binocular rivalry project contains the EEG signal and corresponding behavioural button press data from participants reporting their perceptual experience (either seeing red or green colour stimuli). Experimental protocol is documented here: https://elifesciences.org/articles/40868
DOI: 10.6084/m9.figshare.11804949.v1
title: Single participant data

description: This data from a binocular rivalry project contains the EEG signal and corresponding behavioural button press data from participants reporting their perceptual experience (either seeing red or green colour stimuli). Experimental protocol is documented here: https://elifesciences.org/articles/40868
DOI: 10.6084/m9.figshare.11804925
title: Anatomy of a Century Long Injustice: The Estado Novo and Domestic Labor in Brazil

description: Abstract This article seeks to reassess the political process that led to the exclusion of domestic workers from the 1943 Brazilian labor legislation known as the CLT. The public debate about the juridical condition of this vast labor category, in which poor and black women predominated, began in the 1933-1934 Constituent Assembly and dragged on for the following decade. Several political actors interfered in this debate. For the feminist activists linked to the Brazilian Federation for Women’s Progress, the outcome of the controversy represented one of many defeats it suffered during the so-called Estado Novo, although the defense of domestic workers had never been a priority among its members. The outcome of the clash of opinions about this subject guided public policies for this group of workers in the decades following Vargas’ fall from power in 1945.
DOI: 10.6084/m9.figshare.11804925.v1
title: Anatomy of a Century Long Injustice: The Estado Novo and Domestic Labor in Brazil

description: Abstract This article seeks to reassess the political process that led to the exclusion of domestic workers from the 1943 Brazilian labor legislation known as the CLT. The public debate about the juridical condition of this vast labor category, in which poor and black women predominated, began in the 1933-1934 Constituent Assembly and dragged on for the following decade. Several political actors interfered in this debate. For the feminist activists linked to the Brazilian Federation for Women’s Progress, the outcome of the controversy represented one of many defeats it suffered during the so-called Estado Novo, although the defense of domestic workers had never been a priority among its members. The outcome of the clash of opinions about this subject guided public policies for this group of workers in the decades following Vargas’ fall from power in 1945.
DOI: 10.6084/m9.figshare.11804811
title: Women working in animal husbandry: a study in the agroecological transition context

description: ABSTRACT: This study investigated the engagement of women in animal husbandry in agroecological transitions scenarios and reflects on the advancements and challenges encountered in overcoming gender inequalities in rural areas. Semi-structured interviews and participant observation were conducted in nine properties in three municipalities in the region of Zona da Mata of Minas Gerais State. Women are involved in husbandry of different animal species, and participate in the management, processing, and marketing of products, contributing to food diversification, self-consumption, and income generation. Overcoming gender inequality in an agroecological scenario requires making the work and knowledge of women farmers visible and increasing their prominence, while ensuring economic valuation of their work and access to the market through public policies aligned with the reality of animal production in agroecological family agriculture contexts.
DOI: 10.6084/m9.figshare.11804808
title: Effects of different concentrations of sodium azide and chloramphenicol on the preservation of raw milk samples

description: ABSTRACT: The preservation of milk samples for microbiological analyses by the Brazilian Network of Milk Quality Control Laboratories requires the addition of preservatives to maintain the microbiota from the time of sample collection to the moment of analysis. The number of microorganisms can change as a result of the active ingredients and concentration of the preservative, as well as due to interactions between the preservatives, incubation time, and packaging temperature. The objective of this research was to evaluate the conservation potential of different concentrations of sodium azide and chloramphenicol on the analytical shelf life of milk samples. Two farms were selected, one with a low bacterial count and one with a high bacterial count. The milk was dispensed into sterile vials and tested after the addition of the usual concentrations of sodium azide and chloramphenicol, doubled concentrations, tripled concentrations, and as a control, without preservatives. The samples were incubated at 3 ± 1 °C, 6 ± 1 °C, and 9 ± 1 °C for 14 days and analyzed daily for their bacterial count by flow cytometry. The tripled preservative concentrations improved conservation, increasing the timespan of the analytical viability of the samples without altering the results.
DOI: 10.6084/m9.figshare.11804808.v1
title: Effects of different concentrations of sodium azide and chloramphenicol on the preservation of raw milk samples

description: ABSTRACT: The preservation of milk samples for microbiological analyses by the Brazilian Network of Milk Quality Control Laboratories requires the addition of preservatives to maintain the microbiota from the time of sample collection to the moment of analysis. The number of microorganisms can change as a result of the active ingredients and concentration of the preservative, as well as due to interactions between the preservatives, incubation time, and packaging temperature. The objective of this research was to evaluate the conservation potential of different concentrations of sodium azide and chloramphenicol on the analytical shelf life of milk samples. Two farms were selected, one with a low bacterial count and one with a high bacterial count. The milk was dispensed into sterile vials and tested after the addition of the usual concentrations of sodium azide and chloramphenicol, doubled concentrations, tripled concentrations, and as a control, without preservatives. The samples were incubated at 3 ± 1 °C, 6 ± 1 °C, and 9 ± 1 °C for 14 days and analyzed daily for their bacterial count by flow cytometry. The tripled preservative concentrations improved conservation, increasing the timespan of the analytical viability of the samples without altering the results.
DOI: 10.6084/m9.figshare.11804811.v1
title: Women working in animal husbandry: a study in the agroecological transition context

description: ABSTRACT: This study investigated the engagement of women in animal husbandry in agroecological transitions scenarios and reflects on the advancements and challenges encountered in overcoming gender inequalities in rural areas. Semi-structured interviews and participant observation were conducted in nine properties in three municipalities in the region of Zona da Mata of Minas Gerais State. Women are involved in husbandry of different animal species, and participate in the management, processing, and marketing of products, contributing to food diversification, self-consumption, and income generation. Overcoming gender inequality in an agroecological scenario requires making the work and knowledge of women farmers visible and increasing their prominence, while ensuring economic valuation of their work and access to the market through public policies aligned with the reality of animal production in agroecological family agriculture contexts.
DOI: 10.6084/m9.figshare.11804796
title: Factors Associated with the Need for Insulin as a Complementary Treatment to Metformin in Gestational Diabetes Mellitus

description: Abstract Objective To evaluate the factors associated with the need for insulin as a complementary treatment to metformin in pregnant women with gestational diabetes mellitus (GDM). Methods A case-control study was performed from April 2011 to February 2016 with pregnant women with GDM who needed complementary treatments besides diet and physical exercise. Those treated with metformin were compared with those who, in addition to metformin, also needed the combination with insulin. Maternal characteristics and glycemic control were evaluated. Multinomial logistic regression models were developed to evaluate the influence of different therapies on neonatal outcomes. Results A total of 475 pregnant women who needed pharmacological therapy were evaluated. Of these, 366 (77.05%) were submitted to single therapy with metformin, and 109 (22.94%) needed insulin as a complementary treatment. In the analysis of the odds ratio (OR), fasting glucose (FG)&lt;90 mg/dL reduced the odds of needing the combination (OR: 0.438 [0.235-0.815]; p=0.009], as well as primiparity (OR: 0.280 [0.111-0.704]; p=0.007]. In obese pregnant women, an increased chance of needing the combination was observed (OR: 2,072 [1,063-4,039]; p=0,032). Conclusion Obesity resulted in an increased chance of the mother needing insulin as a complementary treatment to metformin, while FG&lt;90 mg/dL and primiparity were protective factors.
DOI: 10.6084/m9.figshare.11804802
title: Printed knowledge: Editorial Practices and Commercial Strategies in Early Modern Printers’ Manuals

description: Abstract This article aims to understand how knowledge was produced and publicized in Early Modern printers’ manuals. Firstly, I explore the parameters for the consolidation of the manuals as a genre in the European book market. Secondly, I analyse authors’, editors’ and printers’ recurrent practices of reconfiguring illustrations from previous printers’ manuals as an editorial strategy which aimed at spreading practical knowledge to a wider audience. Finally, I examine the typographic and linguistic modes of presentation of testimonial narrative and discursive alterity. I argue that Early Modern printers’ manuals result from the confluence of compilatory practices registered in ink by authors and artists, economic strategies adopted by editors and booksellers, the typographic language used at printing workshops, and the collective spirit which supported a project of knowledge diffusion.