cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30880484.v1
title: Input data tables for Muffett et al. 2026

description: Input data tables including:IMNGS output (top 150 sequences compared at 99% similarity against all IMNGS sequences as of Nov 2025) Respiration input data for 2 and 6 months collected using a optical DO reader. (Wells: well data was read from, trial: round of data collection,Baseline adj Dark: O2 change across 30 minutes under lightless conditions, Baseline adj Light : O2 change across 30 minutes under lit (~100 PAR) conditions ,Full name,Trial-ID,Protein cont (measured using bradford assay), Name, Treatment Group,Respiration trial emperature,Month of data collection).Summed positive hits from the retrained McCauley dataset seperated by host group.Tracking data for all 16S sequences for each sample from beginning to end of 16S filtering process.
DOI: 10.15468/dl.xbs8sy
title: Occurrence Download

description: A dataset containing 3151 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (New Zealand)",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Gobiomorphus hubbsi [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 3151 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052678-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uggktv
title: Occurrence Download

description: A dataset containing 973675 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-125.63841 34.32553,-107.09694 34.44024,-107.47729 48.45843,-125.67983 48.3129,-125.63841 34.32553))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 973675 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052673-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x43env
title: Occurrence Download

description: A dataset containing 45585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-63.89061 -9.94384,-61.83753 -9.94384,-61.83753 -8.77928,-63.89061 -8.77928,-63.89061 -9.94384))",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 45585 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052680-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14157753
title: List Benchmarks Kaggle
DOI: 10.15468/dl.ah5zbj
title: Occurrence Download

description: A dataset containing 739456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters is less than or equal to 1060.0",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is USA.5.19_1",
 "OccurrenceStatus is Present",
 "StateProvince is California",
 "Year 2019-2025"
 ]
}

 The dataset includes 739456 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052677-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17932105
title: Testable Deviations from the Born Rule Induced by Modular Nonequilibrium

description: This repository contains numerical simulation data and statistical analysis underlying the results and figures presented in the manuscript “Testable Deviations from the Born Rule Induced by Modular Nonequilibrium”.

 

The data illustrate first-order deviations from standard Born-rule probabilities arising from controlled modular (KMS) nonequilibrium, as well as the cumulative statistical detectability of these deviations under large-$N$ measurement protocols.

 

All simulations are illustrative and were generated to validate the theoretical predictions and scaling behavior discussed in the manuscript. No experimental data are included. The dataset supports reproducibility of the numerical results and figures reported in the paper.
DOI: 10.5281/zenodo.17932104
title: Testable Deviations from the Born Rule Induced by Modular Nonequilibrium

description: This repository contains numerical simulation data and statistical analysis underlying the results and figures presented in the manuscript “Testable Deviations from the Born Rule Induced by Modular Nonequilibrium”.

 

The data illustrate first-order deviations from standard Born-rule probabilities arising from controlled modular (KMS) nonequilibrium, as well as the cumulative statistical detectability of these deviations under large-$N$ measurement protocols.

 

All simulations are illustrative and were generated to validate the theoretical predictions and scaling behavior discussed in the manuscript. No experimental data are included. The dataset supports reproducibility of the numerical results and figures reported in the paper.
DOI: 10.34740/kaggle/dsv/14157766
title: Berita UNPAM
DOI: 10.15468/dl.erykr8
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence, Living Specimen)",
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Felis silvestris",
 "Year 1985-2025"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052683-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bsh2mm
title: Occurrence Download

description: A dataset containing 427 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus albicaulis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is United States of America",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2000"
 ]
}

 The dataset includes 427 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052685-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3x5zk
title: Occurrence Download

description: A dataset containing 434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus albicaulis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2000"
 ]
}

 The dataset includes 434 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052686-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sr8g75
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-5.48303 36.11882,-5.49579 36.11901,-5.5007 36.11862,-5.50647 36.11763,-5.51211 36.11326,-5.5153 36.10989,-5.51408 36.10751,-5.51052 36.11128,-5.50733 36.11307,-5.50647 36.11515,-5.50058 36.11515,-5.49555 36.11614,-5.49223 36.11535,-5.48377 36.11544,-5.48303 36.11882))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052687-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29109695
title: Transcriptional activity generates chromatin motion that drives nuclear blebbing

description: Abnormal nuclear blebbing is a hallmark of human diseases, including cancers and age-related disorders. Previous work has outlined that nuclear blebbing is due to an imbalance of nuclear strength resisting actin confinement and contraction. Independent of this balance, our recent work revealed that inhibiting RNA polymerase II (RNA Pol II) suppresses nuclear blebbing, but the mechanism remains unknown. Disruption of transcriptional activity through rapid degradation of RNA Pol II via auxin inducible degron suppresses nuclear blebbing. To more finely decrease then restore transcriptional activity, we removed culture media serum and then added it back respectively. Decreasing transcriptional activity decreases nuclear bleb formation, stability, and rupture while returning transcriptional activity increases nuclear blebbing. These modulations of transcriptional activity did not alter the nuclear spring constant or actin confinement and contraction. Instead, we find that transcriptional activity regulates chromatin domain motion measured by mean square displacement (MSD) of chromatin domains labeled via transfected Cy3-dNTPs. Increasing chromatin domain motion using an established RAD51 inhibitor B02 resulted in increased nuclear blebbing. Thus, we reveal that transcriptional activity drives nuclear blebbing through chromatin motion.
DOI: 10.6084/m9.figshare.29109695.v3
title: Transcriptional activity generates chromatin motion that drives nuclear blebbing

description: Abnormal nuclear blebbing is a hallmark of human diseases, including cancers and age-related disorders. Previous work has outlined that nuclear blebbing is due to an imbalance of nuclear strength resisting actin confinement and contraction. Independent of this balance, our recent work revealed that inhibiting RNA polymerase II (RNA Pol II) suppresses nuclear blebbing, but the mechanism remains unknown. Disruption of transcriptional activity through rapid degradation of RNA Pol II via auxin inducible degron suppresses nuclear blebbing. To more finely decrease then restore transcriptional activity, we removed culture media serum and then added it back respectively. Decreasing transcriptional activity decreases nuclear bleb formation, stability, and rupture while returning transcriptional activity increases nuclear blebbing. These modulations of transcriptional activity did not alter the nuclear spring constant or actin confinement and contraction. Instead, we find that transcriptional activity regulates chromatin domain motion measured by mean square displacement (MSD) of chromatin domains labeled via transfected Cy3-dNTPs. Increasing chromatin domain motion using an established RAD51 inhibitor B02 resulted in increased nuclear blebbing. Thus, we reveal that transcriptional activity drives nuclear blebbing through chromatin motion.
DOI: 10.6084/m9.figshare.29109695.v2
title: Transcriptional activity generates chromatin motion that drives nuclear blebbing

description: Abnormal nuclear blebbing is a hallmark of human diseases, including cancers and age-related disorders. Previous work has outlined that nuclear blebbing is due to an imbalance of nuclear strength resisting actin confinement and contraction. Independent of this balance, our recent work revealed that inhibiting RNA polymerase II suppresses nuclear blebbing, but the mechanism remains unknown. Disruption of transcriptional activity through degradation of RNA Pol II slowly or rapidly via auxin inducible degron suppresses nuclear blebbing, though this approach is drastic. Through removing cell culture media serum and then adding it back, we can decrease and then restore transcriptional activity. Decreasing transcriptional activity decreases nuclear bleb formation, stability, and rupture while returning transcriptional activity increases nuclear blebbing. These modulations of transcriptional activity did not alter nuclear spring constant or actin confinement and contraction. Instead, we find that transcription activity regulates chromatin domain motion measured by mean square displacement (MSD) of chromatin domains labeled via transfected Cy3-dNTPs. Increasing chromatin domain motion using an established RAD51 inhibitor B02 resulted in increased nuclear blebbing. We reveal that two hallmarks of human disease are directly linked as transcriptional activity drives nuclear blebbing through chromatin motion.
DOI: 10.34740/kaggle/dsv/14157813
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.34740/kaggle/dsv/14157809
title: Berita UNDIP
DOI: 10.15468/dl.jrfx5y
title: Occurrence Download

description: A dataset containing 776 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Ochotona collaris [GBIF Backbone Taxonomy])",
 "StateProvince is one of (Alaska)"
 ]
 }
 ]
}

 The dataset includes 776 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052689-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xzx4h
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-5.48303 36.11882,-5.49579 36.11901,-5.5007 36.11862,-5.50647 36.11763,-5.51211 36.11326,-5.5153 36.10989,-5.51408 36.10751,-5.51052 36.11128,-5.50733 36.11307,-5.50647 36.11515,-5.50058 36.11515,-5.49555 36.11614,-5.49223 36.11535,-5.48377 36.11544,-5.48303 36.11882))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052690-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywazqb
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "DatasetKey is one of (Registros biológicos de Amaryllidaceae y otras especies del proyecto Farma sostenible 22-211)"
 ]
}

 The dataset includes 27 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052692-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqkrkk
title: Occurrence Download

description: A dataset containing 1968 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-118.48314 53.6195,-128.64786 40.06653,-112.83607 20.86651,-97.77723 13.71355,-86.67132 4.30177,-83.09484 -39.18066,-45.25949 -38.99241,-25.68298 -4.54531,-64.08305 14.27826,-68.78894 49.85478,-118.48314 53.6195))",
 "PublishingOrg is 7ce8aef0-9e92-11dc-8738-b8a03c50a862",
 "TaxonKey is one of (Andrenidae, Apidae, Colletidae, Halictidae, Megachilidae)"
 ]
}

 The dataset includes 1968 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052693-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14157857
title: HackingGPT Dataset
DOI: 10.15468/dl.emyjm9
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Gabon",
 "TaxonKey is Lepidochelys olivacea"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052694-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17932161
title: Predykcja efektywności wykorzystania gruntów na terenie Polski
DOI: 10.15468/dl.gn8mpt
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus albicaulis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2010"
 ]
}

 The dataset includes 170 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052698-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17931886
title: Dataset for "De-aberration for transcranial photoacoustic computed tomography through an adult human skull"

description: This dataset contains the raw data associated with the manuscript "De-aberration for transcranial photoacoustic computed tomography (PACT) through an adult human skull," available on arXiv at https://arxiv.org/abs/2404.05937. The dataset contains top and bottom illumination PACT raw data for a representative phantom with and without the skull. It also contains a binary mask of the ex-vivo human skull used in the experiment.

 

Dataset structure: The dataset is organized into the following directories:

 

Top_illumination: 



ph_ws.mat: Phantom data with the skull (Top illumination, Laser firing time: 130 samples).

ph_ns.mat: Phantom data without the skull (Top illumination, Laser firing time: 830 samples).




Bottom_illumination: 



ph_ws.mat: Phantom data with the skull (Bottom illumination, Laser firing time: 100 samples).

ph_ns.mat: Phantom data without the skull (Bottom illumination, Laser firing time: 100 samples).



Skull_Mask:





skull_mask.mat: A binary volume mask of the ex vivo skull used in the experiment. The x, y, and z grid coordinates are also included (unit: m).

tx_coords.mat: Coordinates of the ultrasound transducers (unit: m).



Usage notes:





The data is saved as a 3D array of size 128 x 400 x 4096 (Ne x Na x Nt), where Ne is the number of elements in the arc array, Na is the number of the azimuthal scanning points (over 360 degrees), and Nt is the number of time samples.

The data was sampled at 10 MHz.



Citation: If you use this dataset, please cite the associated arXiv manuscript at https://arxiv.org/abs/2404.05937.
DOI: 10.5281/zenodo.17931887
title: Dataset for "De-aberration for transcranial photoacoustic computed tomography through an adult human skull"

description: This dataset contains the raw data associated with the manuscript "De-aberration for transcranial photoacoustic computed tomography (PACT) through an adult human skull," available on arXiv at https://arxiv.org/abs/2404.05937. The dataset contains top and bottom illumination PACT raw data for a representative phantom with and without the skull. It also contains a binary mask of the ex-vivo human skull used in the experiment.

 

Dataset structure: The dataset is organized into the following directories:

 

Top_illumination: 



ph_ws.mat: Phantom data with the skull (Top illumination, Laser firing time: 130 samples).

ph_ns.mat: Phantom data without the skull (Top illumination, Laser firing time: 830 samples).




Bottom_illumination: 



ph_ws.mat: Phantom data with the skull (Bottom illumination, Laser firing time: 100 samples).

ph_ns.mat: Phantom data without the skull (Bottom illumination, Laser firing time: 100 samples).



Skull_Mask:





skull_mask.mat: A binary volume mask of the ex vivo skull used in the experiment. The x, y, and z grid coordinates are also included (unit: m).

tx_coords.mat: Coordinates of the ultrasound transducers (unit: m).



Usage notes:





The data is saved as a 3D array of size 128 x 400 x 4096 (Ne x Na x Nt), where Ne is the number of elements in the arc array, Na is the number of the azimuthal scanning points (over 360 degrees), and Nt is the number of time samples.

The data was sampled at 10 MHz.



Citation: If you use this dataset, please cite the associated arXiv manuscript at https://arxiv.org/abs/2404.05937.
DOI: 10.25919/mmth-bg23
title: NBDL-J1XVBWCHGR9WC2
DOI: 10.25919/r15p-s835
title: NBDL-J1XVBWCMPR9M8Y
DOI: 10.48610/7c16f33
title: Prevalence of flying fox retrovirus (FFRV) in Pteropus species in Australia

description: This dataset includes information on individual bats and characteristics including sex, age, location etc. It also includes real-time PCR results for FFRV and cyt-B
DOI: 10.5281/zenodo.17930773
title: A Benchmark Dataset of 13 Routes with Semantic Annotations Mapped onto a Mobility Network

description: These datasets constitute a collection of reference datasets used to evaluate a data model for the semantic annotation of routes. The benchmark is composed of a set of routes, the segments of the mobility network through which these routes pass, and a set of aligned semantic annotations associated with the routes.

The 13 routes, derived from diverse collaborative sources, are stored in the file routes.csv. The geometries of the routes were map-matched to the BDTOPO road network representing the mobility network and are stored in the mobilite layer of the GeoPackage. The map-matching process is described in: https://doi.org/10.1080/23729333.2019.1615730.

The semantic annotations of the routes are also stored in the GeoPackage in the following layers:





pii_balcons for route segments running along balconies,




pii_lacet for route segments consisting of a series of hairpin bends,




pii_foret for segments running along or through forests,




pii_lac for route segments running along lakes,




pii_pont for segments crossing bridges.



This archive is released for transparency and reproducibility purposes.
DOI: 10.5281/zenodo.17930772
title: A Benchmark Dataset of 13 Routes with Semantic Annotations Mapped onto a Mobility Network

description: These datasets constitute a collection of reference datasets used to evaluate a data model for the semantic annotation of routes. The benchmark is composed of a set of routes, the segments of the mobility network through which these routes pass, and a set of aligned semantic annotations associated with the routes.

The 13 routes, derived from diverse collaborative sources, are stored in the file routes.csv. The geometries of the routes were map-matched to the BDTOPO road network representing the mobility network and are stored in the mobilite layer of the GeoPackage. The map-matching process is described in: https://doi.org/10.1080/23729333.2019.1615730.

The semantic annotations of the routes are also stored in the GeoPackage in the following layers:





pii_balcons for route segments running along balconies,




pii_lacet for route segments consisting of a series of hairpin bends,




pii_foret for segments running along or through forests,




pii_lac for route segments running along lakes,




pii_pont for segments crossing bridges.



This archive is released for transparency and reproducibility purposes.
DOI: 10.34965/i60516
title: 20244061
DOI: 10.15468/dl.m943gx
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Burnaia helicochorda"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052702-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.