cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0ht2n4s
title: CIL:11133, Didelphimorphia, macrophage. In Cell Image Library

description: Preparation: crosslinking-fixative fixed tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: osmium tetroxide
Data qualification: Processed
description: A thin section through a macrophage from interstitial tissue of the testes of the opossum. These cells are characterized by extensive folding of the cell surface, some of which appear to have captured fluid from the extracellular environment through pinocytosis. Figure 50 from Chapter 2 (Specializations of the Free Surface) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j02n512t
title: CIL:11137, Mammalia, endothelial cell. In Cell Image Library

description: Capillary endothelial cells from mammalian cardiac muscle caught in the act of fluid-phase micropinocytosis. Arrows indicate multiple sites where invaginaton along the membrane suggests vesicles forming during an endocytic event. Figure 52 from Chapter 2 (Specializations of the Free Surface) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
description: Preparation: crosslinking-fixative fixed tissue; osmium tetroxide fixed tissue; embedded tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: osmium tetroxide
Data qualification: Processed
DOI: 10.6075/j0st7nnw
title: CIL:11135, Felis catus, Amia calva, blood vessel endothelial cell. In Cell Image Library

description: Electron micrographs show examples of pinocytosis in endothelial cells of blood vessels in the cat myocardium (panels A,B,C and H), and from the choroid rete of the bowfin fish eye. Both types of cells show finger-like projections (labeled as marginal folds) extending into the extracellular space, and an accumulation of vacuoles nearby. Figure 51 from Chapter 2 (Specializations of the Free Surface) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
description: Preparation: crosslinking-fixative fixed tissue; osmium tetroxide fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: osmium tetroxide
Data qualification: Processed
DOI: 10.6075/j0pc32qt
title: CIL:57293. In Cell Image Library

description: Ebola virus Huh7 infected cells 18 hours post infection, anti-nucleocapsid immuno-golg labelling.
description: Pixel size: 8.25 Å ; image size: 2048x2048; Samples were chemically fixed, high-pressure frozen and freeze substituted in HM20, thin sections 100 nm thickness.
description: Imaging mode: transmission electron microscopy (TEM); thin-section
DOI: 10.6075/j07d2vhk
title: CIL:57386. In Cell Image Library

description: Ebola virus Huh7 infected cells 22 hours post infection, anti-nucleocapsid immuno-golg labelling.
description: Pixel size: 8.25 Å ; image size: 2048x2048; Samples were chemically fixed, high-pressure frozen and freeze substituted in HM20, thin sections 100 nm thickness.
description: Imaging mode: transmission electron microscopy (TEM); thin-section
DOI: 10.6075/j0gq6z37
title: CIL:57374. In Cell Image Library

description: Ebola virus Huh7 infected cells 22 hours post infection, anti-nucleocapsid immuno-golg labelling.
description: Pixel size: 8.25 Å ; image size: 2048x2048; Samples were chemically fixed, high-pressure frozen and freeze substituted in HM20, thin sections 100 nm thickness.
description: Imaging mode: transmission electron microscopy (TEM); thin-section
DOI: 10.15468/dl.rb8w35
title: Occurrence Download

description: A dataset containing 1006 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is South America",
 "Country is Chile",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is one of (Aristotelia chilensis, Aristotelia chilensis)",
 "Year 2000-2025"
 ]
}

 The dataset includes 1006 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009229-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6075/j0qc03tr
title: CIL:57246. In Cell Image Library

description: Pixel size: 8.25 Å ; image size: 2048x2048; Samples were chemically fixed, high-pressure frozen and freeze substituted in HM20, thin sections 100 nm thickness.
description: Ebola virus Huh7 infected cells 18 hours post infection, anti-nucleocapsid immuno-golg labelling.
description: Imaging mode: transmission electron microscopy (TEM); thin-section
DOI: 10.6075/j0v40vj3
title: CIL:57259. In Cell Image Library

description: Imaging mode: transmission electron microscopy (TEM); thin-section
description: Pixel size: 8.25 Å ; image size: 2048x2048; Samples were chemically fixed, high-pressure frozen and freeze substituted in HM20, thin sections 100 nm thickness.
description: Ebola virus Huh7 infected cells 18 hours post infection, anti-nucleocapsid immuno-golg labelling.
DOI: 10.6075/j0zw1m8h
title: CIL:57244. In Cell Image Library

description: Ebola virus Huh7 infected cells 18 hours post infection, anti-nucleocapsid immuno-golg labelling.
description: Pixel size: 8.25 Å ; image size: 2048x2048; Samples were chemically fixed, high-pressure frozen and freeze substituted in HM20, thin sections 100 nm thickness.
description: Imaging mode: transmission electron microscopy (TEM); thin-section
DOI: 10.6075/j0sj1jdg
title: CIL:11131. In Cell Image Library

description: Preparation: critical_point dried specimen
Relation to intact cell: dispersed cells in vitro
Item type: scanning electron microscopy (SEM)
Imaging mode: illumination by electrons; secondary_electron imaging
Parameter imaged: secondary electron generation
Data qualification: Processed
description: The final stages of cell division is captured in the scanning electron micrograph. Two daughter cells are still interconnected by slender strands of membrane (white arrow at center of image). Lamellipodia extend from the periphery of each new cell as they begin to spread on the substrate, and microvilli stud the surface over the nucleus. The funnel-like cones (black arrows) are candidate sites for pinocytosis. Image contributed by Keith Porter first appeared in Porter and Bonneville, The Fine Structure of Cells and Tissues, Philadelphia: Lea and Febiger, 1973, and reprinted with permission as Figure 49 from Chapter 2 (Specializations of the Free Surface) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j0vx0fq9
title: CIL:1113, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
DOI: 10.6075/j0w37v3w
title: CIL:11129, Mus musculus, fibroblast. In Cell Image Library

description: Preparation: critical_point dried specimen
Relation to intact cell: dispersed cells in vitro
Item type: scanning electron microscopy (SEM)
Imaging mode: illumination by electrons; secondary_electron imaging
Parameter imaged: secondary electron generation
Data qualification: Processed
description: Scanning electron micrograph of a 3T3 cell growing in culture. Complexity and diversity of structure across the cell surface is apparent in the this image that s courtesy of Susan Brown. Figure 48 from Chapter 2 (Specializations of the Free Surface) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j0j96553
title: CIL:11118, Gerbillinae, epithelial cell. In Cell Image Library

description: Preparation: osmium tetroxide fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: osmium tetroxide
Data qualification: Processed
description: Electron micrograph of epithelial cells of the parotid gland of the gerbil, prepared by rapid freezing and freeze substitution. Microvilli and microplicae, which expand the extracellular surface along intercellular junctions, are particularly apparent when preserved by rapid freezing. Image by Atsushi Ichikawa, Figure 44 from Chapter 2 (Specializations of the Free Surface) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the accompanying chapter is available on the ASCB's BioEDUCATE website.
DOI: 10.6075/j0f18xwp
title: CIL:11850, Haemanthus katharinae, endosperm. In Cell Image Library

description: Preparation: formaldehyde fixed tissue
Relation to intact cell: microtome-sectioned tissue
Item type: film
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: elastic scattering of electrons
Visualization methods: uranyl salt
Processing history: unprocessed raw data
description: Dividing cells from the liquid endosperm of the lily Haemanthus katherinae were fixed with paraformaldehye, embedded in epoxy, and 0.5 micrometer sections prepared. Images were obtained with the Wisconsin high voltage TEM at 1MEV. For this micrograph of a chromosome at anaphase, the grid was tilted to 40 degrees. A similar micrograph tilted to 60 degrees is grouped with this image, making a stereo pair that provides an oblique 3D view.
DOI: 10.57760/sciencedb.30841
title: HaMNPV-Luan Genome
title: HaMNPV-Luan基因组

description: This data is the genome of Luan strain of cotton bollworm multi particle embedded nuclear polyhedrosis virus 
description: This data is the genome of Luan strain of cotton bollworm multi particle embedded nuclear polyhedrosis virus
DOI: 10.57760/sciencedb.30854
title: Long-term frequency stability of the ISCAC compared with the H-maser
title: 与氢钟相比的原子钟的长期频率稳定性

description: This dataset contains the results of a long-term comparison between the Integrated Spherical Cold Atomic Clock (ISCAC) and a hydrogen maser. The 100 MHz signal from the ISCAC was compared against that of the hydrogen maser for over 10 days with a VCH-315 frequency comparator.
description: This dataset contains the results of a long-term comparison between the Integrated Spherical Cold Atomic Clock (ISCAC) and a hydrogen maser. The 100 MHz signal from the ISCAC was compared against that of the hydrogen maser for over 10 days with a VCH-315 frequency comparator.
DOI: 10.15468/dl.ykje9g
title: Occurrence Download

description: A dataset containing 18673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((155.40765 -27.64856,137.09505 -28.9479,136.77021 -39.54565,147.85522 -45.4333,155.40765 -27.64856))",
 "TaxonKey is Eucalyptus tereticornis"
 ]
}

 The dataset includes 18673 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009230-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.30703
title: Complete Cytb and ND4 gene datasets for 68 of Psammophis lineolatus and 2 of Psammophis turpanensis
title: 68条花条蛇和2条吐鲁番花条蛇的完整的Cytb和ND4基因数据集

description: The dataset provides genetic information for two species: the steppe ribbon racer (Psammophis lineolatus) and the Turpan sand snake (Psammophis turpanensis). For both species, the Cytb and ND4 genes were fully sequenced. The dataset contains complete sequences of these genes for 68 steppe ribbon racers and two Turpan sand snakes.
description: The dataset provides genetic information for two species: the steppe ribbon racer (Psammophis lineolatus) and the Turpan sand snake (Psammophis turpanensis). For both species, the Cytb and ND4 genes were fully sequenced. The dataset contains complete sequences of these genes for 68 steppe ribbon racers and two Turpan sand snakes.
DOI: 10.15468/dl.327yqh
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Caragana korshinskii"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009231-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6075/j00z72z4
title: CIL: 53621, Homo sapiens, HeLa. In Cell Image Library

description: Atypical family: The human kinome comprises 538 kinases playing essential cellular functions by catalyzing protein phosphorylations. Systematic annotation of subcellular spatial distribution of the kinome greatly facilitates investigation of normal and disease mechanisms. Here, we present Kinome Atlas (KA), an image-based map of the kinome annotated to 10 compartments of the cell. 456 epitope-tagged kinases, representing 85% of the human kinome, were expressed in HeLa cells and imaged by immunofluorescent microscopy under a unified condition. KA revealed kinase family-enriched subcellular localizations, and discovered a collection of new kinase localizations at mitochondria, plasma membrane, extracellular space, and other unique structures. This resource provides the first snapshot of the kinome under a unified condition, and is a key step toward comprehensive understanding of the spatial and temporal dynamics of the kinome in physiological and disease states.
description: Visualization methods: confocal microscopy
description: Kinome Atlas documented representative images for 456 kinases expressed in HeLa cells, and visualized by immunofluorescence staining of the epitope tag. Nuclei were stained with DAPI. Two representative views from confocal microscopy were collected for each kinase. Also, organelle markers were co-stained for some kinases to indicate specific localization.
DOI: 10.6075/j04b30p7
title: CIL:45771, Homo sapiens. In Cell Image Library

description: Gustafsdottir et al. (doi:10.1371/journal.pone.0080999) have developed a multiplex cytological profiling assay that "paints the cell" with as many fluorescent markers as possible without compromising our ability to extract rich, quantitative profiles in high throughput. The assay detects seven major cellular components. In a pilot screen of bioactive compounds, the assay detected a range of cellular phenotypes and it clustered compounds with similar annotated protein targets or chemical structure based on cytological profiles. The results demonstrate that the assay captures subtle patterns in the combination of morphological labels, thereby detecting the effects of chemical compounds even though their targets are not stained directly. This image-based assay provides an unbiased approach to characterize compound- and disease-associated cell states to support future probe discovery.

Using the cell-painting assay, the Broad Institute has assembled a reference dataset of profiles for U2OS osteosarcoma cells treated with ~30,000 compounds. The compound collection includes DOS-derived compounds (20,000), as well as chemically diverse MLI compounds with biologically diverse performance identified through analysis of PubChem (10,000), and known bioactive compounds to serve as landmarks (2,500). The DOS compounds consist of structurally diverse and stereochemically rich compounds with structures distinct from the current MLSMR. The compound collection also includes 267 distinct compounds nominated by MLPCN Centers from projects for which the Centers would like to identify new chemical series with similar activities.

The experiment consists of 413 microtiter plates. Each plate has 384 wells. Each well has 9 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.
description: Plate 24304 - Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This image set provides a basis for testing image-based profiling methods wrt. to their ability to distinguish the effects of small molecules.
 
Images
The images are of U2OS cells treated with each of 1600 known bioactive compounds and labeled with six labels that characterize seven organelles (the .cell-painting. assay).
 
This pilot experiment consists of 20 plates. Each plate has 384 wells and each well has 9 fields of view for a total of 69,120 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale image file, so there are 345,600 image files in 16-bit TIFF format.
DOI: 10.6075/j0sf2tvz
title: CIL:37170, Rattus, intestinal epithelial cell. In Cell Image Library

description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi. Original Magnification: x50,000.
description: Preparation: osmium tetroxide fixed tissue
Relation to intact cell: sectioned tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: lead salt; potassium permanganate
Processing history: unprocessed raw data
description: Transmission electron micrograph of a section close to the luminal surface of the rat intestinal epithelium showing a tight junction (zonula occludens) extending diagonally across the image from upper left to lower right. The triple layer structure of the epithelial cell membrane (total thickness 110 A) is visible along the free cell margin and the microvilli, which are mostly cut in cross section. Image corresponds to Fig. 2 in J. Cell Biol. 17:375-412. Image made available by James D. Jamieson and the Department of Cell Biology, Yale University School of Medicine.
DOI: 10.6075/j0x34w78
title: CIL:26553, Mus musculus, fibroblast. In Cell Image Library

description: Cells were cultured in DME (Invitrogen) supplemented with 10% fetal bovine serum and 100 U/ml penicillin/streptomycin (Invitrogen) at 37°C in a humidified 5% CO2 incubator. Cells were fixed using 3.7% paraformaldehyde in PBS for 15 min, permeabilized using 0.2% Triton X-100 in PBS for 2 min, blocked with 2% BSA in PBS, and stained with the indicated primary antibodies for at 4°C overnight, followed by incubation with a secondary Alexa Fluor 488–, 546– or 594–conjugated antibody. F-actin was visualized with TRITC or Alexa Fluor 350–conjugated phalloidin. Images were captured by Leica TCS SP2 confocal microscope with HCX PL APO 63X objective.
description: Preparation: formaldehyde fixed tissue; detergent permeabilized
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: confocal microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: Alexa Fluor 488; Alexa Fluor 546
Data qualification: Raw
description: To study the molecular mechanism by which nonmuscle myosin II (MII) regulates protrusion and adhesion dynamics in migrating cells, NIH3T3 cells were co-stained for TRIO (green) and myosin IIA (red). These findings help elucidate a functional link between MII and Rac1/Cdc42 GTPases, which may regulate protrusion/adhesion dynamics in migrating cells. This image is the original data file from Figure S2, “Colocalization of MII and GEFs in NIH3T3 fibroblasts,” J. Cell Biol. 2010. Vol. 190(4):663–674.
DOI: 10.57760/sciencedb.30862
title: Raw data related to "Flat band and many-body gap in chirally twisted triple bilayer graphene"
title: Raw data related to "Flat band and many-body gap in chirally twisted triple bilayer graphene"

description: Raw data related to "Flat band and many-body gap in chirally twisted triple bilayer graphene"
description: Raw data related to "Flat band and many-body gap in chirally twisted triple bilayer graphene"
DOI: 10.57760/sciencedb.30852
title: High-throughput sequencing of rhizobacteria in the rhizosphere soil of grass-legume mixture in high-altitude areas in 2023
title: High-throughput sequencing of rhizobacteria in the rhizosphere soil of grass-legume mixture in high-altitude areas in 2023

description: High-throughput sequencing of rhizobacteria in the rhizosphere soil of grass-legume mixture in cold regions in 2023, comparison of data between blank and sown samples in the rhizosphere soil of leguminous and grass
description: High-throughput sequencing of rhizobacteria in the rhizosphere soil of grass-legume mixture in cold regions in 2023, comparison of data between blank and sown samples in the rhizosphere soil of leguminous and grass
DOI: 10.6075/j0rf5vdc
title: CIL:57421. In Cell Image Library

description: Pixel size: 8.25 Å ; image size: 2048x2048; Samples were chemically fixed, high-pressure frozen and freeze substituted in HM20, thin sections 100 nm thickness.
description: Ebola virus Huh7 infected cells 22 hours post infection, anti-VP40 immuno-golg labelling.
description: Imaging mode: transmission electron microscopy (TEM); thin-section
DOI: 10.6075/j0x63nbc
title: CIL:57472. In Cell Image Library

description: Imaging mode: transmission electron microscopy (TEM); thin-section
description: Pixel size: 8.25 Å ; image size: 2048x2048; Samples were chemically fixed, high-pressure frozen and freeze substituted in HM20, thin sections 100 nm thickness.
description: Ebola virus Huh7 infected cells 22 hours post infection, anti-VP40 immuno-golg labelling.
DOI: 10.6075/j08c9wnd
title: CIL:57422. In Cell Image Library

description: Pixel size: 8.25 Å ; image size: 2048x2048; Samples were chemically fixed, high-pressure frozen and freeze substituted in HM20, thin sections 100 nm thickness.
description: Ebola virus Huh7 infected cells 22 hours post infection, anti-VP40 immuno-golg labelling.
description: Imaging mode: transmission electron microscopy (TEM); thin-section