cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bu1rxb
title: Occurrence Download

description: A dataset containing 7258 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Colombia",
 "Country is Panama",
 "Country is Costa Rica",
 "Country is Mexico",
 "Country is Peru",
 "Country is Brazil",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is French Guiana",
 "Country is Suriname",
 "Country is Cuba",
 "Country is Bahamas",
 "Country is Honduras",
 "Country is Guatemala",
 "Country is Bolivia (Plurinational State of)",
 "Country is Ecuador",
 "Country is Trinidad and Tobago",
 "Country is Nicaragua",
 "Country is Belize"
 ]
 },
 "Year 2000-2019",
 "EventDate 2000-01-01-2019-01-01",
 "HasCoordinate is true",
 "TaxonKey is Ensifera ensifera (Boissonneau, 1840)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7258 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006123-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9wvce
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium cucullatum Wendelbo"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002655-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpdsc5
title: Occurrence Download

description: A dataset containing 632 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Xanthomixis cinereiceps (Sharpe, 1881)"
 ]
}

 The dataset includes 632 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040626-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oo1ts1
title: Occurrence Download

description: A dataset containing 321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Austria",
 "TaxonKey is Sciurus vulgaris Linnaeus, 1758"
 ]
}

 The dataset includes 321 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006124-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpu4sq
title: Occurrence Download

description: A dataset containing 1930 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cholornis unicolor (Hodgson, 1843)"
 ]
}

 The dataset includes 1930 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040651-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxe8mb
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago nivalis Boiss.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 41 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002622-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3sxv6
title: Occurrence Download

description: A dataset containing 22938 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Austria",
 "TaxonKey is Turdus merula Linnaeus, 1758"
 ]
}

 The dataset includes 22938 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006128-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7557t
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Entandrophragma delevoyi De Wild."
 ]
}

 The dataset includes 65 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040707-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qberls
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Anomobryum filiforme var. concinnatum (Spruce) Loeske",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009716-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yerguw
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium curtum Boiss. & Gaill."
 ]
}

 The dataset includes 213 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002669-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kdxv92
title: Occurrence Download

description: A dataset containing 1007 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Entandrophragma angolense (Welw.) C.DC."
 ]
}

 The dataset includes 1007 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040665-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkl3hm
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptotis equatoris (Thomas, 1912)"
 ]
}

 The dataset includes 48 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009716-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8d4qhh
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum flavofimbriatum J.J.Sm."
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075919-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jt6gkh
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Empogona glabra (K.Schum.) Tosh & Robbr."
 ]
}

 The dataset includes 95 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040689-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tycts
title: Occurrence Download

description: A dataset containing 754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.38645404134712",
 "DecimalLongitude is less than 6.38951359453151",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 754 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002667-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tjjcaf
title: Occurrence Download

description: A dataset containing 1348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Sloanea australis (Benth.) F.Muell."
 ]
}

 The dataset includes 1348 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009716-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24v9me
title: Occurrence Download

description: A dataset containing 3015 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.37727538179393",
 "DecimalLongitude is less than 6.38033493497833",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 3015 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002654-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtgh6o
title: Occurrence Download

description: A dataset containing 4048 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Colombia",
 "Country is Panama",
 "Country is Costa Rica",
 "Country is Mexico",
 "Country is Peru",
 "Country is Brazil",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is French Guiana",
 "Country is Suriname",
 "Country is Cuba",
 "Country is Bahamas",
 "Country is Honduras",
 "Country is Guatemala",
 "Country is Bolivia (Plurinational State of)",
 "Country is Ecuador",
 "Country is Trinidad and Tobago",
 "Country is Nicaragua",
 "Country is Belize"
 ]
 },
 "Year 2000-2019",
 "EventDate 2000-01-01-2019-01-01",
 "HasCoordinate is true",
 "TaxonKey is Eremophila alpestris (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4048 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006126-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2dqb8f
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polymetme thaeocoryla Parin & Borodulina, 1990"
 ]
}

 The dataset includes 124 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040724-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cn6fku
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aloe bowiea Schult. & Schult.f."
 ]
}

 The dataset includes 24 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002675-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2hrys
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macroscelides A.Smith, 1829",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 224 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009718-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ksj4u
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema barbatum H.Schroet."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040744-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtu2d8
title: Occurrence Download

description: A dataset containing 22097 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Quercus carmenensis C.H.Mull.",
 "TaxonKey is Quercus hypoleucoides A.Camus",
 "TaxonKey is Quercus pungens Liebm.",
 "TaxonKey is Quercus agrifolia Née",
 "TaxonKey is Quercus ajoensis C.H.Mull.",
 "TaxonKey is Quercus chihuahuensis Trel.",
 "TaxonKey is Quercus gravesii Sudw.",
 "TaxonKey is Quercus chrysolepis Liebm.",
 "TaxonKey is Quercus grisea Liebm.",
 "TaxonKey is Quercus toumeyi Sarg.",
 "TaxonKey is Quercus turbinella Greene",
 "TaxonKey is Quercus dumosa Nutt.",
 "TaxonKey is Quercus vaseyana Buckley",
 "TaxonKey is Quercus virginiana Mill.",
 "TaxonKey is Quercus arizonica Sarg.",
 "TaxonKey is Quercus wislizenii A. De Candolle",
 "TaxonKey is Quercus cornelius-mulleri Nixon & K.P.Steele",
 "TaxonKey is Quercus rugosa Trel.",
 "TaxonKey is Quercus intricata Trel.",
 "TaxonKey is Quercus tomentella Engelm.",
 "TaxonKey is Quercus viminea Trel.",
 "TaxonKey is Quercus muehlenbergii Engelm."
 ]
}

 The dataset includes 22097 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009717-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56pgnw
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema beccarii H.Schroet."
 ]
}

 The dataset includes 104 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040762-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k08bue
title: Occurrence Download

description: A dataset containing 19314 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursus arctos Linnaeus, 1758"
 ]
}

 The dataset includes 19314 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009717-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azfw32
title: Occurrence Download

description: A dataset containing 1425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "TaxonKey is Prunus avium (L.) L."
 ]
}

 The dataset includes 1425 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039844-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syfe6k
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesocricetus newtoni (Nehring, 1898)"
 ]
}

 The dataset includes 140 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040676-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25897024
title: Presence and absence of records of dengue cases, yellow fever cases, and vector occurrences on a worldwide 7,774-km² hexagonal grid

description: Dataset containing the presence and absence of records of dengue cases, of yellow fever cases, and of vector occurrences, on a worldwide spatial grid of 7,774-km2 hexagons (https://zenodo.org/records/10028166), together with the sources for this information. These data were used to produce models of global dengue and yellow fever transmission risk (https://www.nature.com/articles/s42003-022-03492-9 and https://doi.org/10.1371/journal.pntd.0009496) that, in “Climate change is aggravating dengue and yellow fever transmission risk”, are projected to future climate change scenarios.The dataset is composed of three Excel files in which all the information related to the worldwide distribution of records of dengue cases, yellow fever cases and vectors, at the hexagon level, has been compiled: 1) dengue records and sources (records_and_sources_dengue.xls), 2) yellow fever records and sources (records_and_sources_yellow_fever.xls), and 3) vector records and sources (records_and_sources_vectors.xls).In each of the Excel files we found: the field identifier of each hexagon (‘HEX10_ID’), the geographical coordinates of the centroids of the hexagons (‘Latitude’ and ‘Longitude’), the presence and absence of disease records and of vector occurrences (‘Dengue’, ‘Yellow_Fever’, ‘<i>Aedes_aegypti’</i>, ‘<i>Aedes_albopictus’</i>, ‘<i>Aedes_vittatus’</i>, ‘<i>Aedes_africanus’</i>, ‘<i>Aedes_luteocephalus’</i>, ‘<i>Aedes_niveus’</i>, ‘<i>Sabethes_chloropterus’</i>, ‘<i>Haemagogus_janthinomys’</i>, ‘<i>Haemagogus_leucocelaenus’</i>), and the sources of this information represented by the source title (‘Title’) and by a web link (‘Source’).
DOI: 10.15468/dl.0x0ctz
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erythrina decora Harms",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009717-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hqcfh
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Empogona jenniferae Cheek"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040698-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skd6zn
title: Occurrence Download

description: A dataset containing 585297 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Piperaceae)"
 ]
}

 The dataset includes 585297 records from 1331 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040672-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14000603
title: Code and data for molecular dating benchmark based on real and simulated Primates gene trees

description: Benchmark of molecular clock dating applied to single gene trees separately, whose results are described in “Factors influencing the accuracy and precision in dating single gene trees” by Guillaume Louvel and Hugues Roest Crollius.



Real Primates gene trees are analyzed to identify what characteristics of a gene tree are related to the precision of dating; 

alignments are also simulated on the tree of Primates to measure the accuracy of dating under controlled parameters such as the degree of rate variation and the length of the alignment.


Content

Louvel_Accuracy-dating_results_2024.tar.gz:    - notebook/: statistical analyses in Python;    - outputs/: html reports with figures/tables resulting from the analysis;    - lib/: required libraries.    - data/: intermediate data needed for the final analysis (dates, gene tree features);

Louvel_Accuracy-dating_dating-source_2024.tar.gz:    - dating-source/: input data and config files necessary to reproduce data;

Louvel_Accuracy-dating_raw-data-preparation_2024.tar.gz:    - raw-data-preparation/: raw data and steps to produce dating-source.RequirementsThis code requires the libraries developed in the lab for this project,available at github.com/DyogenIBENS/, but also included here in lib/.- Phylorgs- LibsDyogen_py3- ToolsDyogen_py3.
DOI: 10.6084/m9.figshare.24054355
title: Additional file 1 of Gut microbiome causal impacts on the prognosis of breast cancer: a Mendelian randomization study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24054355.v1
title: Additional file 1 of Gut microbiome causal impacts on the prognosis of breast cancer: a Mendelian randomization study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24054361
title: Additional file 2 of Gut microbiome causal impacts on the prognosis of breast cancer: a Mendelian randomization study

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.24054361.v1
title: Additional file 2 of Gut microbiome causal impacts on the prognosis of breast cancer: a Mendelian randomization study

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.24054364
title: Additional file 3 of Gut microbiome causal impacts on the prognosis of breast cancer: a Mendelian randomization study

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.24054364.v1
title: Additional file 3 of Gut microbiome causal impacts on the prognosis of breast cancer: a Mendelian randomization study

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.24054367
title: Additional file 4 of Gut microbiome causal impacts on the prognosis of breast cancer: a Mendelian randomization study

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.24054367.v1
title: Additional file 4 of Gut microbiome causal impacts on the prognosis of breast cancer: a Mendelian randomization study

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26736291.v1
title: Additional file 2 of Current status of digital health interventions in the health system in Burkina Faso

description: Supplementary Material 2
DOI: 10.15468/dl.jhvneq
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.683914 -33.840231, 148.683914 -33.844723, 148.688405 -33.844723, 148.688405 -33.840231, 148.683914 -33.840231))"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069791-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24054261
title: Additional file 1 of Tranexamic acid can reduce blood loss in adolescent scoliosis surgery: a systematic review and meta-analysis

description: Additional File 1: Supplementary Table 1. Basic Information For Articles
DOI: 10.6084/m9.figshare.24054261.v1
title: Additional file 1 of Tranexamic acid can reduce blood loss in adolescent scoliosis surgery: a systematic review and meta-analysis

description: Additional File 1: Supplementary Table 1. Basic Information For Articles