cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16981365
title: Protein Models: Autoimmunity-associated DIORA1 binds the MRCK family of serine/threonine kinases and controls cell motility

description: Models generated for the interaction between DIORA1 and MRCKB with massive sampling using AFsample (Wallner, 2022)

File descriptions

The data is compressed with zstandard to extract an archive use the following command:



tar --use-compress-program=unzstd -xvf all_models_scores.tar.zst


all_models_scores.tar.zst - Contains scores for all generated models, extracts to the folder all_models/selected_models.tar.zst - Contains top-ranked selected models that are also highlighted in the paper, extracts to selected_models/

Models for different interaction partners

All models and corresponding results *.pkl (distogram removed to save space) are archived in different files for each interaction partner.

Stoichiometry 1:1 (main text)

KIM_diora_1_1.tar.zst (2.2GB) - All 3000 models generated for the KIM region of MRCKB to interact with DIORA1.MRCKB_1020_1582-diora1_1_214.tar.zst (3.9GB) - All 3,000 models generated for the MRCKB range 1020-1582 corresponding to the C1-PH-CNH domains.

Different models with different stoichiometries  (Supplementary Information)

KIM_diora1_1_2.tar.zst (1.9GB) - 3,000 models for KIM:DIORA1 1:2KIM_diora1_2_1.tar.zst (1.4GB) - 3,000 models for KIM:DIORA1 2:1KIM_diora1_2_2.tar.zst (2.6GB) - 3,000 models for KIM:DIORA1 2:2

MRCKB_1020_1582-diora1_1_214_1_2.tar.zst  (5.3GB) - 3,000 models for C1-PH-CNH:DIORA1 1:2MRCKB_1020_1582-diora1_1_214_2_1.tar.zst (8.8GB) - 3,000 models for C1-PH-CNH:DIORA1 2:1MRCKB_1020_1582-diora1_1_214_2_2.tar.zst (10.8GB) - 3,000 models for C1-PH-CNH:DIORA1 2:2

 

Modelling protocol

Models generated for the interaction between DIORA1 and MRCKB with massive sampling using AFsample (Wallner, 2022)

Code: http://wallnerlab.org/AFsample

Alphafold was run with dropout activated at inference using all 15 (3x5) neural network models available for multimeric prediction:



model_[1-5]_multimer

model_[1-5]_multimer_v2

model_[1-5]_multimer_v3


The following command was used to generate 200 models per neural network model, 3000 (15x200) models in total for each modeling input



python alphafoldv2.3.1/run_alphafold.py--dropout--nstruct 200--use_precomputed_msas
--data_dir=/proj/beyondfold/apps/alphafold_data
--template_mmcif_dir=/proj/beyondfold/apps/alphafold_data/pdb_mmcif/mmcif_files
--obsolete_pdbs_path=/proj/beyondfold/apps/alphafold_data/pdb_mmcif/obsolete.dat
--mgnify_database_path=/proj/beyondfold/users/x_bjowa/databases/mgnify/mgy_all.fa
--uniref90_database_path=/proj/beyondfold/apps/alphafold_data/uniref90/uniref90.fasta
--max_template_date=3000-01-01
--use_gpu_relax=True
--model_preset=multimer
--db_preset=full_dbs
--uniref30_database_path=/proj/beyondfold/apps/alphafold_data/uniclust30/UniRef30_2021_03/UniRef30_2021_03
--bfd_database_path=/proj/beyondfold/apps/alphafold_data/bfd/bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt
--pdb_seqres_database_path=/proj/beyondfold/apps/alphafold_data/pdb_seqres/pdb_seqres.txt
--uniprot_database_path=/proj/beyondfold/apps/alphafold_data/uniprot/uniprot.fasta
DOI: 10.7910/dvn/x8jm22
title: Replication Package for: "Beyond Borders: Does Firm-Level Exposure to State and Local Paid Sick Leave Mandates Lead to Policy Diffusion?

description: Replication package (data and Stata/R code) for "Beyond Borders: Does Firm-Level Exposure to State and Local Paid Sick Leave Mandates Lead to Policy Diffusion?" by Schneider & Harknett (2025), including the appendix exhibits. ABSTRACT: States and localities have passed labor standards to raise the floor on job quality, including mandating employer provision of Paid Sick Leave (PSL). However, contemporary political polarization makes the enactment of national labor standards and of state standards in many states unlikely. Prior literature has examined how labor standards may “spillover” spatially to affect firms, jobs, and workers in nearby places who are not covered by labor standards. We motivate and empirically examine the potential for “intra-firm spillovers.” We argue that multi-state firms facing a “patchwork” of labor standards may align company labor practices with the most stringent regulatory environments that they face given the geographic distribution of their establishments. To test this possibility, we take advantage of new employer- employee linked data from The Shift Project and focus on the case of paid sick leave. We find that state and local paid sick leave mandates spill-over through multi-state employers to provide workers in places without mandates effective access to paid sick leave, and these findings survive a placebo test using other fringe benefits. Companies act as conduits through which the reach of local mandates that raise the floor on job quality are expanded to a broader set of workers.
DOI: 10.15468/dl.u3s5zw
title: Occurrence Download

description: A dataset containing 3893 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caulerpa cylindracea",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((40.81373 29.26705, 40.81373 50.94, -6.6 50.94, -6.6 29.26705, 40.81373 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 3893 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043344-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmfm5a
title: Occurrence Download

description: A dataset containing 21081 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex rupestris"
 ]
}

 The dataset includes 21081 records from 388 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043338-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15472/hect89
title: Monitoreo de fauna y flora en el campus universitario de la Universidad Nacional de Colombia - Sede de La Paz, Cesar 2021(BPUN 547)

description: Inventario y monitoreo de la biodiversidad (plantas vasculares leñosas y vertebrados superiores) del campus universitario de la Sede de La Paz, de la Universidad Nacional de Colombia, realizado en el año 2021 en el municipio de La Paz, Cesar.El recurso de datos consta de 4.847 registros biológicos. La cobertura taxonómica abarca los reinos Animalia (4.098) y Plantae (749).
DOI: 10.5281/zenodo.17081200
title: Indian National Gurukul Education Act, 2025: A Global Paradigm for Holistic, Inclusive, and Future-Ready Education

description: Indian National Gurukul Education Act, 2025: A Global Paradigm for Holistic, Inclusive, and Future-Ready Education

 

Description

This publication presents the Indian National Gurukul Education Act, 2025, a pioneering legislative framework that integrates ancient Indian wisdom with contemporary science, technology, and global standards of learning. The Act envisions a holistic, multidisciplinary, and value-based educational system promoting sustainability, digital innovation, and employability at par with international norms. It guarantees inclusive access, social equity, digital empowerment, and recognition for Gurukul graduates worldwide. By fostering lifelong learning, international research cooperation, and global accreditation, this Act positions India as a civilizational lighthouse—offering a visionary model for ethical and sustainable education in the 21st century. The Gurukul model stands as a benchmark for transformative education, research, and innovation, aligning with UNESCO’s Futures of Education and the Sustainable Development Goals (SDGs).
DOI: 10.5281/zenodo.17081199
title: Indian National Gurukul Education Act, 2025: A Global Paradigm for Holistic, Inclusive, and Future-Ready Education

description: Indian National Gurukul Education Act, 2025: A Global Paradigm for Holistic, Inclusive, and Future-Ready Education

 

Description

This publication presents the Indian National Gurukul Education Act, 2025, a pioneering legislative framework that integrates ancient Indian wisdom with contemporary science, technology, and global standards of learning. The Act envisions a holistic, multidisciplinary, and value-based educational system promoting sustainability, digital innovation, and employability at par with international norms. It guarantees inclusive access, social equity, digital empowerment, and recognition for Gurukul graduates worldwide. By fostering lifelong learning, international research cooperation, and global accreditation, this Act positions India as a civilizational lighthouse—offering a visionary model for ethical and sustainable education in the 21st century. The Gurukul model stands as a benchmark for transformative education, research, and innovation, aligning with UNESCO’s Futures of Education and the Sustainable Development Goals (SDGs).
DOI: 10.15468/dl.uqcxwt
title: Occurrence Download

description: A dataset containing 650 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Cichla ocellaris, Arapaima, Arapaima, Osteoglossum ferreirai, Osteoglossum ferrerai, Osteoglossum)"
 ]
}

 The dataset includes 650 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043346-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17081206
title: English interiors: 342-357
DOI: 10.5281/zenodo.17081207
title: English interiors: 342-357
DOI: 10.15468/dl.p7cscv
title: Occurrence Download

description: A dataset containing 92758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capreolus capreolus",
 "HasCoordinate is true",
 "Country is United Kingdom of Great Britain and Northern Ireland"
 ]
}

 The dataset includes 92758 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043301-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15442925
title: Data and analyses of "Local Species Richness of Parasitoid Wasps (Ichneumonidae: Pimplinae) in Afrotropical Forest: Conservation Perspectives"

description: This dataset contains the data, analyses and supplementary table and figures of our paper on the diversity of Pimplinae wasps collected in Uganda (Uganda 2014–2015). We estimated the relative species richness in different habitat types, for different biological groups of pimplines, and compared to other tropical collections.

The script (`Pimplinae richness analyses.R`) will usually be what you're after as a reader. It contains the R code used to analyse the data and create the figures in the paper.

To run the analyses, you will also need to load the R package `turkuwasps`. That is where we have packaged all the general R code we use to analyse wasp habitat use, phenology and species richness. For best results, install the version that was used for this paper (v0.0.3): the package may change significantly in the future!

The main dataset contains:



`Pimplinae richness analyses.R` The R code used to analyse the data and create the figures.

`202505 Pimplinae.csv` The data of all the pimpline wasps. In "Kotka" format as stored in the Finnish Biodiversity Information Facility: two headers, followed by each wasp on its own row.

`202505 damaged or missing Pimplinae samples.csv` The basic data of the samples that did not collect a typical sample of Pimplinae.

`202505 Pimplinae simplified.csv` The data in simplified format. Irrelevant columns removed and otherwise made easier to read and handle. The script converts the data in `202505 Pimplinae.csv` to this format. This file is not used by the script, it is included as a convenience to the reader to make browsing the data easier.

`figures` Folder with the figures of the article. Saved here by the script.

`map` Folder with the QGIS file and source files used to make a map of the study site.

`ReadMe.md` ReadMe file with the same information as here.


The supplement `Supplementary material Local Species Richness of Parasitoid Wasps.pdf` contains the supplementary table and supplementary figures of the article.
DOI: 10.5281/zenodo.16882929
title: Data and analyses of "Local Species Richness of Parasitoid Wasps (Ichneumonidae: Pimplinae) in Afrotropical Forest: Conservation Perspectives"

description: This dataset contains the data, analyses and supplementary table and figures of our paper on the diversity of Pimplinae wasps collected in Uganda (Uganda 2014–2015). We estimated the relative species richness in different habitat types, for different biological groups of pimplines, and compared to other tropical collections.

The script (`Pimplinae richness analyses.R`) will usually be what you're after as a reader. It contains the R code used to analyse the data and create the figures in the paper.

To run the analyses, you will also need to load the R package `turkuwasps`. That is where we have packaged all the general R code we use to analyse wasp habitat use, phenology and species richness. For best results, install the version that was used for this paper (v0.0.3): the package may change significantly in the future!

The main dataset contains:



`Pimplinae richness analyses.R` The R code used to analyse the data and create the figures.

`202505 Pimplinae.csv` The data of all the pimpline wasps. In "Kotka" format as stored in the Finnish Biodiversity Information Facility: two headers, followed by each wasp on its own row.

`202505 damaged or missing Pimplinae samples.csv` The basic data of the samples that did not collect a typical sample of Pimplinae.

`202505 Pimplinae simplified.csv` The data in simplified format. Irrelevant columns removed and otherwise made easier to read and handle. The script converts the data in `202505 Pimplinae.csv` to this format. This file is not used by the script, it is included as a convenience to the reader to make browsing the data easier.

`figures` Folder with the figures of the article. Saved here by the script.

`map` Folder with the QGIS file and source files used to make a map of the study site.

`ReadMe.md` ReadMe file with the same information as here.


The supplement `Supplementary material Local Species Richness of Parasitoid Wasps.pdf` contains the supplementary table and supplementary figures of the article.
DOI: 10.15468/dl.5pusv8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cynodonichthys kuelpmanni)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043351-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h62a47
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Verbena urticifolia",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043352-250827131500795/datasets/export for details.
DOI: 10.15468/dl.gum2ga
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cinnagrostis vicunarum"
 ]
}

 The dataset includes 94 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043350-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4gm5y
title: Occurrence Download

description: A dataset containing 429188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capreolus capreolus",
 "HasCoordinate is true",
 "Country is France"
 ]
}

 The dataset includes 429188 records from 3615 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043303-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-81090
title: Redemption tidings, vol. 60, nos. 1-52, 5 Jan. - 27 Dec. 1984

description: [description english/roman)] Issued weekly. "The pentecostal voice of Assemblies of God" -- subtitle.
DOI: 10.15468/dl.nd4auj
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Donacia cincticornis Newman, 1838"
 ]
}

 The dataset includes 107 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050378-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tspdbp
title: Occurrence Download

description: A dataset containing 347 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andrachne microphylla (Lam.) Baill."
 ]
}

 The dataset includes 347 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029611-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-81010
title: Redemption tidings, vol. 60, nos. 1-52, 5 Jan. - 27 Dec. 1984

description: [description english/roman)] Issued weekly. "The pentecostal voice of Assemblies of God" -- subtitle.
DOI: 10.15468/dl.pzjuvg
title: Occurrence Download

description: A dataset containing 1415 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptosiphonia woodii (J.Agardh) J.Agardh"
 ]
}

 The dataset includes 1415 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110722-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3qwcq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andrachne ramosa Pojark."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029626-230224095556074/datasets/export for details.
DOI: 10.15468/dl.fgmgaj
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is India",
 "TaxonKey is Passer montanus (Linnaeus, 1758)"
 ]
}

 The dataset includes 136 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032693-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-82190
title: Pentecost, nos. 31-34, Mar.-Dec. 1955

description: [description english/roman)] Issued quarterly in March, June, Sept. & Dec. "A review of world-wide pentecostal missionary and revival news" -- subtitle from cover. "A quarterly review of world-wide pentecostal activity" -- subtitle from masthead.
DOI: 10.15468/dl.h34e59
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phaethon lepturus Daudin, 1802",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102867-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-81986
title: Pentecost, nos. 19-22, Mar.-Dec. 1952

description: [description english/roman)] Issued quarterly in March, June, Sept. & Dec. "A review of world-wide pentecostal missionary and revival news" -- subtitle from cover. "A quarterly review of world-wide pentecostal activity" -- subtitle from masthead.
DOI: 10.15468/dl.yte5m9
title: Occurrence Download

description: A dataset containing 334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Country is one of (Portugal, Spain)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (743cc32d-d83d-4e3a-a574-77d1725b1e08, 7338b4d9-d75b-4edb-b238-b09f52397f49, 7b4f2f30-a456-11d9-8049-b8a03c50a862, 54a7048f-6d1f-468e-bd38-a585e05ca24d, 1989b627-2a61-44db-83e4-392efc5da0a9)",
 "TaxonKey is Platichthys flesus (Linnaeus, 1758)"
 ]
}

 The dataset includes 334 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029619-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mjgsr
title: Occurrence Download

description: A dataset containing 2018 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ground Census Data for Lake Nakuru and Nairobi National Parks"
 ]
}

 The dataset includes 2018 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003569-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-81870
title: Pentecost, nos. 15-18, Mar.-Dec. 1951

description: [description english/roman)] Issued quarterly in March, June, Sept. & Dec. "A review of world-wide pentecostal missionary and revival news" -- subtitle from cover. "A quarterly review of world-wide pentecostal activity" -- subtitle from masthead.
DOI: 10.15468/dl.we23dy
title: Occurrence Download

description: A dataset containing 150858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Epilobium montanum L."
 ]
}

 The dataset includes 150858 records from 452 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029636-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wuurej
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Citharomangelia africana (G.B.Sowerby Iii, 1903)"
 ]
}

 The dataset includes 19 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082218-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-83239
title: Pentecost, nos. 75-77, Mar.-Sept. 1966

description: [description english/roman)] Issued quarterly in March, June, Sept. & Dec. "A review of world-wide pentecostal misionary and revival news" -- subtitle from cover. "A quarterly review of world-wide pentecostal activity" -- subtitle from masthead.