cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.96037
title: 20 Nematode Genomes - Part 2

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file is Part 2 of 20 Nematode genome nucleotide fasta files. The original files were obtained from WormBase (WS230),http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) multi-line sequences have been converted to single line b) sequence IDs have been prefixed with a species abbreviation: Meloidogyne incognita (mi) Meloidogyne floridensis (mf) Pristionchus pacificus (pp) Caenorhabditis angaria (ca) Caenorhabditis japonica (cj) Caenorhabditis elegans (ce)
DOI: 10.6084/m9.figshare.96041.v1
title: Differential nuclear architecture of striatal neurons

description: <strong>Background:</strong><br>The striatum is composed by five different neuronal populations of which the MSNs constitute the<br>major cell type (~95%). The remaining ~5% of the striatal neurons comprise aspiny interneurons,<br>which have been classified on the basis of their morphology, protein content and electrophysiological properties as large cholinergic interneurons and somatostatin-, parvalbumin- and calretinin-expressing<br>GABAergic interneurons. In addition to these discriminative features, we showed that nuclear morphology is also particular for each striatal cell type (Matamales, Bertran-Gonzalez et al., 2009). <br>Indeed, the characteristic nuclear architecture of striatal populations is evident on DNA staining with TO-PRO-3, which reveals differences regarding the nuclear diameter, the nuclear shape and the pattern of heterochromatin distribution. Thus, nuclear staining with TO-PRO-3 provides a simple means<br>for the identification of MSNs in the absence of other markers. In addition, the other striatal neurons<br>also have distinct nuclear staining patterns, which allow a good prediction of their nature. This method<br>may be useful to identify striatal neurons in tissue sections and potentially in living tissue, using vital<br>DNA fluorescent dyes. With this simple method we carefully quantified striatal neuronal populations<br>and we clearly showed that all MSNs express either D1R or D2R or both. It will be worth to test<br>whether nuclear architecture in striatal neurons is linked to differences in rates of transcriptional<br>activity. In addition, it will be interesting to analyze whether a correlation between the organization of<br>the nucleus of striatal neurons and their characteristic neuronal activity exists.<br> <br><strong>Figure Legend:</strong> (A-E) Schematic view of striatal neurons nuclear morphology: (A),<br>MSNs; (B), Parvalbumin interneurons; (C), Calretinin interneurons; (D), Somatostatin interneurons; (E), Cholinergic interneurons. The three different features that allow the identification of striatal neuronal populations based on their nuclear architecture are represented: blue line designates nuclear shape; dashed green line and numbers indicate average nuclear diameter (μm); red dots are DNA chromocenters; red line represents heterochromatin rim. For details, see Matamales, Bertran-Gonzalez et al., 2009.<br><br>
DOI: 10.6084/m9.figshare.96036
title: 20 Nematode Genomes - Part 1

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file is Part 1 of 20 Nematode genome nucleotide fasta files. The original files were obtained from WormBase (WS230),http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) multi-line sequences have been converted to single line b) sequence IDs have been prefixed with a species abbreviation: Strongyloides ratti (sr) Bursaphelenchus xylophilus (bx) Meloidogyne hapla (mh) Ascaris suum (as) Brugia malayi (bm) Litomosoides sigmodontis (ls) Acanthocheilonema viteae (av) Dirofilaria immitis (di) Trichinella spiralis (ts)
DOI: 10.6084/m9.figshare.96038.v1
title: 20 Nematode Genomes - Part 3

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file is Part 3 of 20 Nematode genome nucleotide fasta files. The original files were obtained from WormBase (WS230),http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) multi-line sequences have been converted to single line b) sequence IDs have been prefixed with a species abbreviation: Caenorhabditis briggsae (cbg) Caenorhabditis sp. 5 (csp5) Caenorhabditis remanei (cr) Caenorhabditis brenneri (cbn) Caenorhabditis sp. 11 (csp11)
DOI: 10.6084/m9.figshare.96041.v2
title: Differential nuclear architecture of striatal neuron populations

description: <strong>Background:</strong> The striatum is composed by five different neuronal populations of which the MSNs constitute the major cell type (~95%). The remaining ~5% of the striatal neurons comprise aspiny interneurons, which have been classified on the basis of their morphology, protein content and electrophysiological properties as large cholinergic interneurons and somatostatin-, parvalbumin- and calretinin-expressing GABAergic interneurons. In addition to these discriminative features, we showed that nuclear morphology is also particular for each striatal cell type (Matamales/Bertran-Gonzalez et al., 2009). Indeed, the characteristic nuclear architecture of striatal populations is evident on DNA staining with TO-PRO-3, which reveals differences regarding the nuclear diameter, the nuclear shape and the pattern of heterochromatin distribution. Thus, nuclear staining with TO-PRO-3 provides a simple means for the identification of MSNs in the absence of other markers. In addition, the other striatal neurons also have distinct nuclear staining patterns, which allow a good prediction of their nature. This method may be useful to identify striatal neurons in tissue sections and potentially in living tissue, using vital DNA fluorescent dyes. With this simple method we carefully quantified striatal neuronal populations and we clearly showed that all MSNs express either D1R or D2R or both. It will be worth to test whether nuclear architecture in striatal neurons is linked to differences in rates of transcriptional activity. In addition, it will be interesting to analyze whether a correlation between the organization of the nucleus of striatal neurons and their characteristic neuronal activity exists. <strong>Figure Legend: </strong> (A-E) Schematic view of striatal neurons nuclear morphology: (A), MSNs; (B), Parvalbumin interneurons; (C), Calretinin interneurons; (D), Somatostatin interneurons; (E), Cholinergic interneurons. The three different features that allow the identification of striatal neuronal populations based on their nuclear architecture are represented: blue line designates nuclear shape; dashed green line and numbers indicate average nuclear diameter (μm); red dots are DNA chromocenters; red line represents heterochromatin rim. For details, see Matamales/Bertran-Gonzalez et al., 2009.
DOI: 10.6084/m9.figshare.96035
title: 20 Nematode Proteomes

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file has 20 Nematode protein fasta files used in Chapter 3 "Annotating nematode genomes" The original files were obtained from WormBase (WS230), http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) all whitespace converted to spaces in sequence headers (otherwise NCBI's makeblastdb fails) b) multi-line sequences have been converted to single line c) sequence IDs have been prefixed with a species abbreviation: Caenorhabditis elegans (ce) Caenorhabditis briggsae (cbg) Caenorhabditis sp. 5 (csp5) Caenorhabditis remanei (cr) Caenorhabditis brenneri (cbn) Caenorhabditis sp. 11 (csp11) Caenorhabditis japonica (cj) Caenorhabditis angaria (ca) Pristionchus pacificus (pp) Strongyloides ratti (sr) Bursaphelenchus xylophilus (bx) Meloidogyne hapla (mh) Meloidogyne incognita (mi) Meloidogyne floridensis (mf) Ascaris suum (as) Brugia malayi (bm) Litomosoides sigmodontis (ls) Acanthocheilonema viteae (av) Dirofilaria immitis (di) Trichinella spiralis (ts)
DOI: 10.6084/m9.figshare.96038.v3
title: 20 Nematode Genomes - Part 3

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file is Part 1 of 20 Nematode genome nucleotide fasta files. The original files were obtained from WormBase (WS230),http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) multi-line sequences have been converted to single line b) sequence IDs have been prefixed with a species abbreviation: Strongyloides ratti (sr) Bursaphelenchus xylophilus (bx) Meloidogyne hapla (mh) Ascaris suum (as) Brugia malayi (bm) Litomosoides sigmodontis (ls) Acanthocheilonema viteae (av) Dirofilaria immitis (di) Trichinella spiralis (ts)
DOI: 10.6084/m9.figshare.96036.v1
title: 20 Nematode Genomes - Part 1

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file is Part 1 of 20 Nematode genome nucleotide fasta files. The original files were obtained from WormBase (WS230),http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) multi-line sequences have been converted to single line b) sequence IDs have been prefixed with a species abbreviation: Strongyloides ratti (sr) Bursaphelenchus xylophilus (bx) Meloidogyne hapla (mh) Ascaris suum (as) Brugia malayi (bm) Litomosoides sigmodontis (ls) Acanthocheilonema viteae (av) Dirofilaria immitis (di) Trichinella spiralis (ts)
DOI: 10.6084/m9.figshare.96037.v1
title: 20 Nematode Genomes - Part 2

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file is Part 2 of 20 Nematode genome nucleotide fasta files. The original files were obtained from WormBase (WS230),http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) multi-line sequences have been converted to single line b) sequence IDs have been prefixed with a species abbreviation: Caenorhabditis elegans (ce) Caenorhabditis japonica (cj) Caenorhabditis angaria (ca) Pristionchus pacificus (pp) Meloidogyne floridensis (mf) Meloidogyne incognita (mi)
DOI: 10.6084/m9.figshare.96038.v2
title: 20 Nematode Genomes - Part 3

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file is Part 3 of 20 Nematode genome nucleotide fasta files. The original files were obtained from WormBase (WS230),http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) multi-line sequences have been converted to single line b) sequence IDs have been prefixed with a species abbreviation: Caenorhabditis brenneri (cbn) Caenorhabditis sp. 11 (csp11) Caenorhabditis remanei (cr) Caenorhabditis briggsae (cbg) Caenorhabditis sp.5 (csp5
DOI: 10.6084/m9.figshare.95996
title: Gaussian Job Archive for C3H6ClNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.96035.v2
title: 20 Nematode Proteomes

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file has 20 Nematode protein fasta files used in Chapter 3 "Annotating nematode genomes" The original files were obtained from WormBase (WS230), http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) all whitespace converted to spaces in sequence headers (otherwise NCBI's makeblastdb fails) b) multi-line sequences have been converted to single line c) sequence IDs have been prefixed with a species abbreviation: Caenorhabditis elegans (ce) Caenorhabditis briggsae (cbg) Caenorhabditis sp. 5 (csp5) Caenorhabditis remanei (cr) Caenorhabditis brenneri (cbn) Caenorhabditis sp. 11 (csp11) Caenorhabditis japonica (cj) Caenorhabditis angaria (ca) Pristionchus pacificus (pp) Strongyloides ratti (sr) Bursaphelenchus xylophilus (bx) Meloidogyne hapla (mh) Meloidogyne incognita (mi) Meloidogyne floridensis (mf) Ascaris suum (as) Brugia malayi (bm) Litomosoides sigmodontis (ls) Acanthocheilonema viteae (av) Dirofilaria immitis (di) Trichinella spiralis (ts)
DOI: 10.6084/m9.figshare.96036.v3
title: 20 Nematode Genomes - Part 1

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file is Part 1 of 20 Nematode genome nucleotide fasta files. The original files were obtained from WormBase (WS230),http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) multi-line sequences have been converted to single line b) sequence IDs have been prefixed with a species abbreviation: Strongyloides ratti (sr) Bursaphelenchus xylophilus (bx) Meloidogyne hapla (mh) Ascaris suum (as) Brugia malayi (bm) Litomosoides sigmodontis (ls) Acanthocheilonema viteae (av) Dirofilaria immitis (di) Trichinella spiralis (ts)
DOI: 10.6084/m9.figshare.96037.v3
title: 20 Nematode Genomes - Part 2

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file is Part 2 of 20 Nematode genome nucleotide fasta files. The original files were obtained from WormBase (WS230),http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) multi-line sequences have been converted to single line b) sequence IDs have been prefixed with a species abbreviation: Meloidogyne incognita (mi) Meloidogyne floridensis (mf) Pristionchus pacificus (pp) Caenorhabditis angaria (ca) Caenorhabditis japonica (cj) Caenorhabditis elegans (ce)
DOI: 10.6084/m9.figshare.96035.v1
title: 20 Nematode Proteomes

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file has 20 Nematode protein fasta files used in Chapter 3 "Annotating nematode genomes" The original files were obtained from WormBase (WS230), http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) all whitespace converted to spaces in sequence headers (otherwise NCBI's makeblastdb fails) b) multi-line sequences have been converted to single line c) sequence IDs have been prefixed with a species abbreviation: Caenorhabditis elegans (ce) Caenorhabditis briggsae (cbg) Caenorhabditis sp. 5 (csp5) Caenorhabditis remanei (cr) Caenorhabditis brenneri (cbn) Caenorhabditis sp. 11 (csp11) Caenorhabditis japonica (cj) Caenorhabditis angaria (ca) Pristionchus pacificus (pp) Strongyloides ratti (sr) Bursaphelenchus xylophilus (bx) Meloidogyne hapla (mh) Meloidogyne incognita (mi) Meloidogyne floridensis (mf) Ascaris suum (as) Brugia malayi (bm) Litomosoides sigmodontis (ls) Acanthocheilonema viteae (av) Dirofilaria immitis (di) Trichinella spiralis (ts)
DOI: 10.6084/m9.figshare.96036.v2
title: 20 Nematode Genomes - Part 1

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file is Part 1 of 20 Nematode genome nucleotide fasta files. The original files were obtained from WormBase (WS230),http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) multi-line sequences have been converted to single line b) sequence IDs have been prefixed with a species abbreviation: Strongyloides ratti (sr) Bursaphelenchus xylophilus (bx) Meloidogyne hapla (mh) Ascaris suum (as) Brugia malayi (bm) Litomosoides sigmodontis (ls) Acanthocheilonema viteae (av) Dirofilaria immitis (di) Trichinella spiralis (ts)
DOI: 10.6084/m9.figshare.96037.v2
title: 20 Nematode Genomes - Part 2

description: Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file is Part 1 of 20 Nematode genome nucleotide fasta files. The original files were obtained from WormBase (WS230),http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) multi-line sequences have been converted to single line b) sequence IDs have been prefixed with a species abbreviation: Strongyloides ratti (sr) Bursaphelenchus xylophilus (bx) Meloidogyne hapla (mh) Ascaris suum (as) Brugia malayi (bm) Litomosoides sigmodontis (ls) Acanthocheilonema viteae (av) Dirofilaria immitis (di) Trichinella spiralis (ts)
DOI: 10.6084/m9.figshare.95991
title: Gaussian Job Archive for C3H11NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95996.v1
title: Gaussian Job Archive for C3H6ClNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95984
title: Gaussian Job Archive for C3H11NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95985
title: Gaussian Job Archive for C3H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95984.v1
title: Gaussian Job Archive for C3H11NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95991.v1
title: Gaussian Job Archive for C3H11NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95980
title: Gaussian Job Archive for C3H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95982
title: Gaussian Job Archive for C27H31F6FeN7O6S2(5)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95983
title: Gaussian Job Archive for C3H6ClNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95978
title: Gaussian Job Archive for C3H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95979
title: Gaussian Job Archive for C3H11NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95980.v1
title: Gaussian Job Archive for C3H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95982.v1
title: Gaussian Job Archive for C27H31F6FeN7O6S2(5)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95983.v1
title: Gaussian Job Archive for C3H6ClNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95977
title: Gaussian Job Archive for C3H6ClNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95979.v1
title: Gaussian Job Archive for C3H11NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95976
title: Gaussian Job Archive for C3H11NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95976.v1
title: Gaussian Job Archive for C3H11NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95977.v1
title: Gaussian Job Archive for C3H6ClNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95978.v1
title: Gaussian Job Archive for C3H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.95972
title: The vacuole life cycle of yeast series

description: Transmission electron microscopy is a powerful technique that allows us to peer deep inside cells. Dynamic cellular processes, like the fission and fusion of internal compartments, are frozen in time by an aldehyde-containing fixative, allowing us to get a glimpse of a population of near 100% genetic clones. The cell in this gallery is a wildtype strain (BY4716) of Saccharomyces cerevisiae, or budding yeast. As is evidenced in the high magnification zooms, the formation of multilamellar compartments is a normal event in the lives of vacuoles and related trafficking organelles.
DOI: 10.6084/m9.figshare.95966.v1
title: TEMPORAL EVOLUTION OF UNIVERSAL PERFORMANCE INDICATORS FOR ACADEMIC PUBLICATION

description: We show universal behaviour for two indicators of the quality of publications taken from two different data sets, papers from a single institution and those on arXiv. We demonstrate this universality for different years and subjects. This distribution is well fitted by a lognormal with a variance of around 1.3, consistent with Radicchi et al (2008). We will also discuss the evolution over time of our measures describing the data and note that simple models do not have the correct temporal behaviour for our parameters. Based on arXiv:1110.3271 with additional new material. Poster given at ECCS 2012
DOI: 10.6084/m9.figshare.95973.v1
title: Collaboration Profiling in UK Higher Education

description: Poster by Tim Evans (Imperial College London), Karen Gurney of Evidence (a division of ThomsonReuters) and Daniel Hook of Symplectic Ltd, Imperial College and Washington University, St. Louis, USA. Presented by Daniel Hook at the INORMS conference entitled "Collaboration Profiling in UK Higher Education".
DOI: 10.6084/m9.figshare.95960
title: Entropy Source - 10M

description: This is a large, low-quality entropy source, suitable for monte carlo and other simulations.
DOI: 10.6084/m9.figshare.95966.v2
title: TEMPORAL EVOLUTION OF UNIVERSAL PERFORMANCE INDICATORS FOR ACADEMIC PUBLICATION

description: We show universal behaviour for two indicators of the quality of publications taken from two different data sets, papers from a single institution and those on arXiv. We demonstrate this universality for different years and subjects. This distribution is well fitted by a lognormal with a variance of around 1.3, consistent with Radicchi et al (2008). We will also discuss the evolution over time of our measures describing the data and note that simple models do not have the correct temporal behaviour for our parameters. Based on arXiv:1110.3271 with additional new material. Poster given at ECCS 2012
DOI: 10.6084/m9.figshare.95972.v1
title: The vacuole life cycle of yeast

description: Transmission electron microscopy is a powerful technique that allows us to peer deep inside cells. Dynamic cellular processes, like the fission and fusion of internal compartments, are frozen in time by an aldehyde-containing fixative, allowing us to get a glimpse of a population of near 100% genetic clones. The cell in this gallery is a wildtype strain (BY4716) of Saccharomyces cerevisiae, or budding yeast. As is evidenced in the high magnification zooms, the formation of multilamellar compartments is a normal event in the lives of vacuoles and related trafficking organelles.
DOI: 10.6084/m9.figshare.95948
title: Bacterial doubling time, expressed in hours, as a function of the treatment

description: Day: Day of the measure (maximal doubling time over 24 hours growth period)<br> Phages: Experimental treatment (see the paper)<br> dt: Doubling time, in hours
DOI: 10.6084/m9.figshare.95949
title: Raw flow cytometry data

description: Day: Day of the measure<br> Treatment: Experimental treatment<br> Other columns are the parameters for each object (bacteria)