cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20105417.v2
title: MS analysis of B. nonstop proteins

description: •Mascot error tolerant (Mascot server) search and dependent peptides search (MaxQuant) has been done •Mascot •2nd replicate search used only •takes into account <strong>whole protein sequences of identified proteins </strong>and searches them with relaxed search conditions like semispecific enzyme specificity, all modifications etc. •MaxQuant •all replicates were used •takes into account <strong>identified peptides </strong>and searches them with all set modifications •search results filtering •Mascot: ion score &gt;20 •8652 peptide spectrum matches used after the filtration •MaxQuant: PEP &lt;0.05 (i.e., local FDR 5%), peptide length difference = 0 •25961 peptide features (3D peaks in the LC-MS profile) used after the filtration
DOI: 10.6084/m9.figshare.24559489.v1
title: Supplementary Material for: Efficacy of Rituximab for Minimal Change Disease and Focal Segmental Glomerulosclerosis with Frequently Relapsing or Steroid-Dependent Nephrotic Syndrome in Adults: A Chinese Multicenter Retrospective Study

description: Introduction Rituximab has been proven effective and safe in pediatric patients with frequently relapsing or steroid-dependent nephrotic syndrome (FR/SDNS). We aimed to analyze the efficacy and safety of rituximab in adult FR/SDNS patients with minimal change disease (MCD) and focal segmental glomerulosclerosis (FSGS). Methods A retrospective cohort study at three nephrology centers in China included adult FR/SDNS patients with biopsy-proven MCD or FSGS. Primary outcomes were relapse frequency and first relapse-free survival time. Adverse events were well recorded and logistic regression analyses were used to investigate risk factors of relapse. Results Eighty-one patients (age 25.0 years, interquartile range, 20.0-40.5; 67% males; 82.7% MCD) received an average rituximab dose of 1393.8 ± 618.7 mg/2y during the two-year follow-up period. The relapse frequency, calculated as the ratio of relapse times to follow-up years, significantly decreased after rituximab treatment [0.04 (0.00, 0.08) vs. 1.71 (1.00, 2.45), P &lt; 0.001]. The first relapse-free survival time was 16.7 ± 8.0 months. Fifty-seven patients (70.4%) achieved cessation of corticosteroids and immunosuppressants within three months after the first rituximab infusion. Adverse events were mostly mild, and no severe treatment-related adverse events were observed. Low serum albumin level before rituximab and high CD56+CD16+ natural killer cell count after rituximab were independent risk factors of relapse within two years after rituximab treatment. Conclusion Rituximab was proven an effective and safe treatment option for adult FR/SDNS patients with MCD or FSGS in maintaining disease remission and minimizing corticosteroid exposure.
DOI: 10.6084/m9.figshare.5715847.v1
title: Supplementary Material for: Rosiglitazone Inhibits Angiotensin II-Induced Proliferation of Glomerular Mesangial Cells via the Gαq/Plcβ4/TRPC Signaling Pathway

description: <b><i>Background/Aims:</i></b> Mesangial cell proliferation and extracellular matrix accumulation (ECM) deposition play an important role in the pathogenesis of glomerulosclerosis. TRPC and PPAR-γ can regulate cell proliferation. Angiotensin II (AngII) can induce mesangial cell proliferation and affect TRPC expression. However, the mechanism has not been fully elucidated. This study was designed to investigate the role of TRPC and the effect of rosiglitazone (RSG) in the proliferation of rat glomerular mesangial cells (HBZY-1) that were stimulated by AngII and the underlying mechanisms. <b><i>Methods:</i></b> Immunofluorescence staining and qRT-PCR were performed to examine the expression levels of TRPCs in HBZY-1. Gene expression levels of TRPC, PPAR-γ, RGS4 (regulators of G protein signaling), the GPCR/Gαq/PLCβ4/TRPC signaling pathway and major downstream molecules (PCNA, SKP2, P21 and P27) were detected by qRT-PCR and western blotting. Additionally, changes in intracellular Ca<sup>2+</sup> levels were determined through Fluo-4 Ca<sup>2+</sup> imaging, and the cell cycle was analyzed by flow cytometry. <b><i>Results:</i></b> Our results found that TRPC1 and 6 were at higher expression levels in HBZY-1 cells. Following AngII stimulation, there were increased levels of TRPC1 and 6, Ca<sup>2+</sup> entry, PCNA and SKP2, decreased expression levels of P21 and P27 and a reduced G<sub>0</sub>/G<sub>1</sub> percentage. Silencing TRPC1 and 6 by siRNAs led to decrease in Ca<sup>2+</sup> influx, G<sub>0</sub>/G<sub>1</sub> cell cycle arrest and cell proliferation. Notably, PPAR-γ activation by RSG upregulated RGS4 expression, which can interact with the Gαq family to inhibit the Gαq-mediated signaling cascade. The results were similar to silencing TRPC1 and 6 by siRNAs. <b><i>Conclusion:</i></b> All these results indicate that RSG could inhibit HBZY-1 cell proliferation via the Gαq/PLCβ4/TRPC signaling pathway.
DOI: 10.6084/m9.figshare.15163971.v1
title: 3.Intensive human land uses negatively affect vertebrate functional diversity -- Main result datasets for model fitting

description: Main result datasets for <i>Intensive human land uses negatively affect vertebrate functional diversity:</i><i><br></i><b>1:</b> Functional richness and functional dispersion across PREDICTS sites and across all vertebrates (results used for fitting <b>models 1 and 3</b>)<br><b>2:</b> Functional richness and functional dispersion across PREDICTS sites, within vertebrate classes (for <b>models 2</b>)<br><b>3:</b> Functional loss and functional gain across pairs of PREDICTS sites, across vertebrate classes (for <b>models 4</b>)<br><b>4:</b> Functional loss and functional gain across pairs of PREDICTS sites, within vertebrate classes (for <b>models 5</b>)<br><br>
DOI: 10.6084/m9.figshare.25483630.v1
title: Data of microwave scan of PLA sample with different infill densities (70% and 30% in each half).

description: Data of microwave scan of PLA sample with different infill densities (70% and 30% in each half). For purpose of measurment, a set of samples (made from the green and blue PLA made by ROSA3D) was prepared, differing only in the filling density.
DOI: 10.6084/m9.figshare.27323346.v3
title: Milling dataset

description: Deep learning methods have shown significant potential in tool wear lifecycle analysis. However, there are fewer open source datasets due to the high cost of data collection and equipment time investment. Existing datasets often fail to capture cutting force changes directly. This paper introduces a comprehensive dataset for the full lifecycle of titanium (Ti6Al4V) tool wear. This dataset utilizes complex circumferential milling paths and employs a rotary dynamometer to directly measure cutting force and torque, alongside multidimensional data from initial wear to severe wear. The dataset consists of 68 different samples with approximately 5 million rows each and includes vibration, sound, cutting force, and torque. Detailed wear pictures and measurement values are also provided. It is a valuable resource for time series prediction, anomaly detection, and tool wear studies. We believe this dataset will be a crucial resource for smart manufacturing research.
DOI: 10.6084/m9.figshare.24158820.v1
title: Limnocylindria sp. and Firmicutes sp. SAXS Data

description: The Limnocylindria sp. data are "Lime_Apo" and "Lime_CABP" for the 2-CABP-unbound and -bound conditions, respectively. The Firmicutes sp. data are "Orange_Apo" and "Orange_CABP" for the 2-CABP-unbound and -bound conditions, respectively.
DOI: 10.6084/m9.figshare.28405961.v1
title: Pretraining Data Sources for SpatialHuman30M

description: This metadata table contains the list of dataset names, slide metadata, and access links for public data used in SpatialHuman30M for scGPT-spatial pretraining.
DOI: 10.6084/m9.figshare.28648721.v1
title: Source data for "Finite-time scaling with two characteristic time scales: Driven critical dynamics with emergent symmetry"

description: Critical points with emergent symmetry exhibit intriguing scaling properties induced by two divergent length scales, attracting extensive investigations recently. We study the driven critical dynamics in a three-dimensional $q$-state clock model, in which the ordered phase breaks the $Z_q$ discrete symmetry, while an emergent $U(1)$ symmetry appears at the critical point. By increasing the temperature at a finite velocity $v$ to traverse the critical point from the ordered phase, we uncover rich dynamic scaling properties beyond the celebrated Kibble-Zurek mechanism. Our findings reveal the existence of two finite-time scaling (FTS) regions, characterized by two driving-induced time scales $\zeta_d\propto v^{-z/r}$ and $\zeta_d'\propto v^{-z/r'}$, respectively. Here $z$ is the dynamic exponent, $r$ is the usual critical exponent of $v$, and $r'$ represents an additional critical exponent of $v$ associated with the dangerously irrelevant scaling variable. While the square of the order parameter $M^2$ obeys the usual FTS form, the angular order parameter $\phi_q$ shows remarkably distinct scaling behaviors controlled by both FTS regions. For small $v$, $\phi_q$ is dominated by the time scale $\zeta_d$, whereas for large $v$, $\phi_q$ is governed by the second time scale $\zeta_d'$. We verify the universality of these scaling properties in models with both isotropic and anisotropic couplings. Our theoretical insights provide a promising foundation for further experimental investigations in the hexagonal RMnO$_3$ (R=rare earth) materials.
DOI: 10.6084/m9.figshare.94259.v4
title: Y chromosome haplotypes Central Europe, Alps, Tyrol

description: Collection of haplotype datasets with Y-STR-markers formatted in FTDNA-table style. This allows to use them in Genetic Genealogy tools like McGee Y-Utility. Most haplotypes originate from the Y-STR profile surveys of laboratories with forensic background (12 or 17 STR markers). The spreadsheets in the appendix of Y-chromosome studies have been copied and adapted: arrangement of markers for FTDNA (2012), and Y GATA H4 conversion to FTDNA by NIST (-1). In addition, some Y-DNA sub-haplogroups are predicted. The prediction comes from the comparison with public data from FTDNA projects and is highly speculative. <br><br>Attention: this fileset is work in progress. Comments appreciated, especially about possible additional datasets. <br> Edit 28. Nov. 2012: added Rebala et al 2012 and Erhart et al 2012 + file renaming<br>Edit 5 Nov. 2012: added prediction corrections for J Haplogroup in Niederstaetter et al 2012<br>13 Aug. 2012: initial release with Thomas et al 2007 and Niederstaetter et al 2012<br>
DOI: 10.6084/m9.figshare.13241534.v1
title: Supplementary Material for: Socio-Environmental, Lifestyle, Behavioural, and Psychological Determinants of Biological Ageing: The Singapore Longitudinal Ageing Study

description: <b><i>Introduction:</i></b> The identification of modifiable health span-promoting factors is a public health priority. <b><i>Objective:</i></b> To explore the socio-environmental, lifestyle, behavioural, and psychological determinants of a clinical phenotypic measure of biological ageing in the Singapore Longitudinal Ageing Study (SLAS) cohort. <b><i>Methods:</i></b> Using cross-sectional data on 2,844 SLAS-2 adults with a chronological age (CA) ≥55 years, we estimated biological age (BA) using a validated panel of clinical, biochemical, physiological, and functional indicators (8 in men and 10 in women) and calculated the difference between BA and CA (BA – CA in years). Potential determinants included education, housing status, loss of a spouse, living alone, lifestyle and health activity, smoking, alcohol consumption, nutritional risks, consumption of milk, soy, fruit, vegetables, coffee and tea, sleep parameters, and life satisfaction. <b><i>Results:</i></b> The mean CA was 67.0 (standard deviation [SD] 7.9; range 55–94) years. The estimated BA varied more widely (SD 8.9 years; range 47.5–119.9 years), and BA – CA ranged from –11.3 to 30.0 years. In stepwise selection regression analyses, multiple significant independent determinants in a final model were larger for private housing, being single/divorced/widowed, productivity, cognitive and leisure time activity scores, 10 h/week of moderate-to-vigorous physical activity, unintended loss of weight, life satisfaction, and daily consumption of fruits 1–2 or ≥3 servings and Chinese tea 1–2 or ≥3 cups daily, together explaining 16% of BA – CA variance in men and 14% in women. Associated BA – CA estimates were highest in men with high-end housing status (–1.8 years, effect size 0.015) and unintended weight loss (1.5 years, effect size 0.017). <b><i>Conclusion:</i></b> We identified determinants of biological ageing which can promote health span.
DOI: 10.6084/m9.figshare.24038556.v1
title: Pre- and Post-Test Results, Analyses and Student Perception Surveys for Traditional and Active Lectures.xlsx

description: These data are the pre- and post-test results, analyses of such, and student perception surveys for traditional and active lecturing in an introductory college biology course (Cells and Molecules lecture - BIOL 1200) commonly enrolling 25-36 students. All surveys and pre/post-tests were anonymous, administered via the same Qualtrics delivery format, not part of the class's grade, and done voluntarily with informed consent.
DOI: 10.6084/m9.figshare.28776545.v1
title: ASJSFLE

description: for journal use
DOI: 10.6084/m9.figshare.7492409.v1
title: Woorden in het basisonderwijs, Schrooten & Vermeer (1994)

description: 15.000 woorden aangeboden aan leerlingen"<br>reference_to_cite: "Schrooten & Vermeer (1994): Tekstgedeelte (pag.1-42), Alfabetische woordenlijst in Word (pag.43-362)"<br>url_download: "https://annevermeer.github.io/wrdlstin.html"<br>
DOI: 10.6084/m9.figshare.23987598.v1
title: Fig 2D Macrophage counts.xlsx

description: Data underlying the associated publication
DOI: 10.6084/m9.figshare.6176249.v1
title: Supplementary Material for: Inhibition of LncRNA-HRIM Increases Cell Viability by Regulating Autophagy Levels During Hypoxia/Reoxygenation in Myocytes

description: <b><i>Backgrund/Aims:</i></b> Ischemia reperfusion (I/R) promotes the severity of cardiomyocyte injury. Long noncoding RNAs (LncRNAs) are key regulators in cardiovascular diseases. However, the association between LncRNAs and myocardial I/R injury has not been thoroughly characterized to date. We attempted to clarify the potential biological role of a LncRNA (E230034O05Rik), which we named hypoxia/reoxygenation (H/R) injury-related factor in myocytes (HRIM), by investigating the differential expression of LncRNAs between groups of myocytes exposed to either a normal level of oxygen or to H/R. <b><i>Methods:</i></b> Microarray analysis was used to determine analyze the global differential expression of LncRNAs in H9c2 myocytes exposed either to a normal level of oxygen or to H/R. Target LncRNA levels were further verified <i>in vitro</i> and <i>ex vivo</i> by real-time polymerase chain reaction (qPCR). Cell viability was analyzed using the Cell Counting Kit-8 assay. Autophagy levels were confirmed by Western blotting, transmission electron microscopy, and autophagic double-labeled (mRFP-GFP-LC3) adenovirus analyses. <b><i>Results:</i></b> Gene expression profiling revealed that 797 LncRNAs and 1898 mRNAs were differentially expressed in the H/R group compared with the normal oxygen group. Among these LncRNAs and mRNAs, 6 upregulated LncRNAs and 2 downregulated LncRNAs in the H/R group were selected and further validated by qPCR <i>in vitro</i> and <i>ex vivo</i>. Additionally, LncRNA-HRIM was inhibited by specific siRNAs in H9c2 myocytes exposed to H/R. The inhibition of LncRNA-HRIM by siRNA prevented cell death by suppressing excessive autophagic activity in myocytes, This finding suggests a detrimental role of LncRNA-HRIM in the regulation of I/R injury. <b><i>Conclusions:</i></b> <i></i>LncRNAs are involved in H/R injury of H9c2 myocytes. Inhibition of LncRNA-HRIM increased cell viability by reducing autophagy in myocytes during H/R.
DOI: 10.6084/m9.figshare.28633241.v1
title: Datasets for the manuscript submitted to GIScience & Remote Sensing

description: The datasets are used for the study "<b>The Hidden Economic Costs of Air Pollution in China: Evidence from Remotely Sensed Nighttime Light Data</b>", which was submitted to GIScience & Remote Sensing.
DOI: 10.6084/m9.figshare.856713.v1
title: Segmented anisotropic ssTEM dataset of neural tissue

description: We provide two image stacks where each contains 20 sections from serial section Transmission Electron Microscopy (ssTEM) of the Drosophila melanogaster third instar larva ventral nerve cord. Both stacks measure approx. 4.7 x 4.7 x 1 microns with a resolution of 4.6 x 4.6 nm/pixel and section thickness of 45-50 nm. In addition to the raw image data, we provide for the first stack a dense labeling of neuron membranes (including orientation and junction), mitochondria, synapses and glia/extracellular space. The first stack serves as a training dataset, and a second stack of the same dimension can be used as a test dataset. All the data and further information is available in the GitHub repository linked below.
DOI: 10.6084/m9.figshare.24160890.v1
title: 胸部三轴加速度信号

description: The project used ECG patches provided by Vivalink, and data processing, data analysis, and algorithm construction were carried out after recruiting volunteers from Hangzhou University of Electronic Science and Technology (HUST) to complete the data collection of normal people, and the data collection of patients with pneumoconiosis from Shanghai Lung Hospital affiliated with Tongji University. The final work of cough recognition and distinguishing coughs of normal people and pneumoconiosis patients was achieved.Acceleration signals at the chest of healthy adults and patients with pneumoconiosis were collected using a triaxial acceleration sensor. Behaviours captured included: breathing, deep breathing, rapid breath change, coughing (in some experiments there was a specific subdivision: low intensity cough, medium intensity cough, high intensity cough, shut up cough), talking (in some experiments there was a specific subdivision: whispering, normal talking, loud talking), sighing, yawning. The acceleration signal was divided into 5s windows, ensuring that each 5s window must contain a certain behaviour. The acceleration signals were feature processed to obtain individual samples, each containing each computed feature value and its corresponding label.
DOI: 10.6084/m9.figshare.1031638.v1
title: Jean-Claude Bradley Double Plus Good (Highly Curated and Validated) Melting Point Dataset

description: 3041 highly curated and validated melting point measurements taken from the Jean-Claude Bradley Open Melting Point Dataset. Values were only kept if there were multiple measurements and the range of values was between 0.01 C and 5 C inclusive. csid corresponds to Chemspider ID.
DOI: 10.6084/m9.figshare.9816443.v1
title: Common Archaeological Phases - EuroEvol

description: Data set aggregated by the EuroEvol project containing the common cultures and periods for the European Neolithic.
DOI: 10.6084/m9.figshare.20362152.v1
title: Integrated forward and reverse cross-docking with vehicle routing and scheduling problem: two inspection strategies and a genetic-mathematic algorithm

description: The detailed data of all instances for both modes.
DOI: 10.6084/m9.figshare.27872792.v1
title: Additional file 2 of Breaking down the laughter: an exploration into the linguistic dimensions in stand-up comedy ratings

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.5572600.v1
title: IEPS Rasch Analysis - Data Set

description: Data for the Rasch analysis of the Interdisciplinary Education Perception Scale
DOI: 10.6084/m9.figshare.12522002.v1
title: JVASP-18639 to JVASP-19667

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.7380638.v1
title: Datasets Urban Mammals

description: Datasets to conduct the phylogenetic path analyses presented in Santini et al. One strategy doesn’t fit all: determinants of urban adaptation in mammals. Ecology Letters
DOI: 10.6084/m9.figshare.14977983.v1
title: VCF_Files

description: This is the vcf files from the project. These include the raw vcf output by the SNP calling, a filtered vcf used for the main analysis and a vcf used for fineRADstructure.
DOI: 10.17608/k6.auckland.22777364.v3
title: Cinema Experiments 2013

description: All data were recorded at the Cinestar Cinema in Mainz, Germany between December 1st, 2013 and January 14th, 2014. Of the 14 screen multiplex, two separate screen rooms were used (Kino 2, capacity 230, and Kino 7, capacity 230). During a film, the entrance doors were closed and ambient air was circulated from outside into the room through vents under the banked seating and out via ceiling mounted openings such that the screening room was flushed entirely circa 6 times per hour. The measurement instruments (PTR-MS-ToF and the CO2 detector) were located outside the screening room (to avoid possible noise) and next to the outgoing air vent. An inlet was inserted into the midpoint of the exit flow and a 2 L/min was drawn through 14′′ Teflon line continuously. From this line the PTR-MS-ToF and CO2 instruments sampled at 100 ml/min and 1.5 L/min respectively.
DOI: 10.6084/m9.figshare.24131451.v1
title: Nwestbladi. All files

description: Data related to the manuscript: "The draft genome of the microscopic <i>Nemertoderma </i><i>westbladi</i> sheds light on the evolution of Acoelomorpha genomes."<br>
DOI: 10.6084/m9.figshare.25107965.v4
title: Real time monitoring

description: Water samples were monitored in real-time, daily, for 12 months (from January to December 2021) across three distinct sampling points (P1, P2 and P3). For this purpose, a Wi-Fi modular multiparameter system was used, the Metrinet - Q52
DOI: 10.6084/m9.figshare.20448234.v3
title: GNSS Data for “Quantitative Evaluation of Environmental Loading Products and Thermal Expansion Effect for Correcting GNSS Vertical Coordinate Time Series in Taiwan ”

description: Data for “Quantitative Evaluation of Environmental Loading Products and Thermal Expansion Effect for Correcting GNSS Vertical Coordinate Time Series in Taiwan ”
DOI: 10.6084/m9.figshare.24043518.v1
title: IL-11 MD Trajectory and PSF files

description: Related to Figure 6D and Supplementary Figure 13 in Metcalfe et al. Nature Communications 2023. Dataset includes trajectory files (dcd files), IL-11 PSF and PDB files, and PDB files corresponding to the first and last frame in the trajectory.
DOI: 10.15468/dl.kqx42t
title: Occurrence Download

description: A dataset containing 4824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Glaucopsyche alexis (Poda, 1761)"
 ]
}

 The dataset includes 4824 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009501-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21729386.v1
title: DMA test data and procedures

description: Dynamic Mechanical Analysis (DMA) was used to obtain the glass transition temperature of unidirectional CFRP composite control samples and field samples collected from Bridge 1-704.
DOI: 10.6084/m9.figshare.3551076.v1
title: Appendix C. Node and link weighted network measures that have been applied to quantify connectivity in habitat networks.

description: Node and link weighted network measures that have been applied to quantify connectivity in habitat networks.
DOI: 10.6084/m9.figshare.22310416.v1
title: Statistical output

description: Html output from R-markdown file.