cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15676386
title: Antibiotic resistant bacteria in ready-to-eat meat products from Switzerland

description: This dataset supports a study investigating the prevalence and characteristics of antibiotic-resistant bacteria in ready-to-eat meat products from Switzerland. With antimicrobial resistance remaining a major global health concern—particularly in the context of intensive livestock production—this study examines ready-to-eat meat products as potential reservoirs for antibiotic resistant bacteria.

A total of 804 ready-to-eat meat products were collected from butcheries across Switzerland. Selective culture methods were used to isolate presumptive antibiotic-resistant bacteria, specifically targeting vancomycin-resistant Enterococci (VRE), extended-spectrum beta-lactamase-producing Enterobacterales (ESBL), carbapenem-resistant Enterobacterales (CRE), and methicillin-resistant Staphylococcus aureus (MRSA).

The "phenotypic resistance dataset" contains antibiotic susceptibility testing results for the isolates, performed using broth microdilution. It reports minimum inhibitory concentration (MIC) values for up to 31 antibiotics (Enterobacterales) or 24 antibiotics (Enterococci). Colistin resistance was assessed separately using the drop test. The dataset also includes multidrug resistance classifications (e.g., MDR index). The "resistance gene and mobile genetic element annotations" include resistance genes identified via AMRFinder Plus, classified by antibiotic class (e.g., beta-lactams, cephalosporins, carbapenems, metals). Mobile genetic elements were identified using MobileElementFinder, and plasmid typing was performed using MOB-suite. The "ARG localization dataset" categorizes resistance genes based on their genomic location—plasmid, chromosome, or phage—using SourceFinder.

Key findings from the dataset include the recovery of 177 antibiotic-resistant bacterial isolates, of which 148 were multidrug-resistant (resistant to ≥3 antibiotic classes). These included third-generation cephalosporin-resistant Enterobacterales, vancomycin-resistant Enterococci, and one methicillin-resistant Staphylococcus aureus (MRSA). All isolates remained susceptible to critical last-resort antibiotics such as carbapenems and colistin. Whole genome sequencing of 31 representative isolates revealed 164 unique resistance genes across 25 resistance classes, including those conferring resistance to beta-lactams, cephalosporins, tetracyclines, and macrolides. Co-selection factors such as metal resistance genes were also identified. Most ARGs were chromosomally encoded, though several were plasmid-borne, indicating potential for horizontal gene transfer.

The dataset includes isolate metadata, phenotypic resistance profiles, and annotated resistance gene information. Sequencing data (both short- and long-read) are available via the National Center for Biotechnology Information (NCBI).
DOI: 10.5281/zenodo.16926098
title: Topological Stability and Non-Markovian Dynamics in Open Quantum Systems: A Q-SuperEnergy∞ Framework"
DOI: 10.5281/zenodo.16926099
title: Topological Stability and Non-Markovian Dynamics in Open Quantum Systems: A Q-SuperEnergy∞ Framework"
DOI: 10.14272/kcalafivpcaxji-uhfffaoysa-n.2
title: 1,10-phenanthroline-5,6-dione
title: InChI=1S/C12H6N2O2/c15-11-7-3-1-5-13-9(7)10-8(12(11)16)4-2-6-14-10/h1-6H

description: This is a physical chemical entity[CHEBI_24431] associated with a molecule[CHEBI_25367].
 The molecule[CHEBI_25367] can be described by the following structural desciptors[cheminf_000085]:
 InChI descriptor[cheminf_000113]: InChI=1S/C12H6N2O2/c15-11-7-3-1-5-13-9(7)10-8(12(11)16)4-2-6-14-10/h1-6H, and canonical SMILES descriptor[cheminf_000007]: O=C1C(=O)c2cccnc2-c2c1cccn2, and by the IUPAC name[cheminf_000107]: 1,10-phenanthroline-5,6-dione.
 
 The physical chemical entity[CHEBI_24431] has a component solvent[CHEBI_46787] which is described by the canonical SMILES descriptor[cheminf_000007]:
 
 The physical chemical entity[CHEBI_24431] has the following Sample ID as registered in the research data repository chemotion (www.chemotion-repository.net, https://doi.org/10.25504/FAIRsharing.iagXcR): CRS-56053

 The physical chemical entity[CHEBI_24431] can be described by the physical descriptors [CHEMINF_000025]:
 Melting point descriptor[CHEMINF_000256]: 
 Boiling point descriptor[CHEMINF_000257]: 
 Refractive index descriptor[CHEMINF_000253]:

 The physical chemical entity[CHEBI_24431] can be further described by the following assays[OBI:0000070][CHMO:0001133]:
 
 CHMO:0000593 | 1H nuclear magnetic resonance spectroscopy (1H NMR)
 
 CHMO:0000596 | distortionless enhancement with polarization transfer (DEPT)
 
 CHMO:0000599 | correlation spectroscopy (COSY)
 
 CHMO:0000604 | heteronuclear single quantum coherence (HSQC)
 
 CHMO:0000601 | heteronuclear multiple bond coherence (HMBC)
 
 CHMO:0000595 | 13C nuclear magnetic resonance spectroscopy (13C NMR)
 
 The physical chemical entity[CHEBI_24431] was deposited to the Molecule Archive of the Karlsruhe Insitute of Technology (KIT) with the following Sample ID: 

 Used ontologies:
 CHEBI - Chemical Entities of Biological Interest
 CHEMINF - chemical information ontology (information entities about chemical entities)
 CHMO - Chemical Methods Ontology
 OBI - Ontology for Biomedical Investigations
DOI: 10.14272/kcalafivpcaxji-uhfffaoysa-n/chmo0000604
title: heteronuclear single quantum coherence (HSQC) (1,10-phenanthroline-5,6-dione)
title: InChI=1S/C12H6N2O2/c15-11-7-3-1-5-13-9(7)10-8(12(11)16)4-2-6-14-10/h1-6H

description: dataset for heteronuclear single quantum coherence (HSQC)
DOI: 10.14272/kcalafivpcaxji-uhfffaoysa-n/chmo0000596
title: distortionless enhancement with polarization transfer (DEPT) (1,10-phenanthroline-5,6-dione)
title: InChI=1S/C12H6N2O2/c15-11-7-3-1-5-13-9(7)10-8(12(11)16)4-2-6-14-10/h1-6H

description: dataset for distortionless enhancement with polarization transfer (DEPT)
DOI: 10.14272/kcalafivpcaxji-uhfffaoysa-n/chmo0000599
title: correlation spectroscopy (COSY) (1,10-phenanthroline-5,6-dione)
title: InChI=1S/C12H6N2O2/c15-11-7-3-1-5-13-9(7)10-8(12(11)16)4-2-6-14-10/h1-6H

description: dataset for correlation spectroscopy (COSY)
DOI: 10.14272/kcalafivpcaxji-uhfffaoysa-n/chmo0000601
title: heteronuclear multiple bond coherence (HMBC) (1,10-phenanthroline-5,6-dione)
title: InChI=1S/C12H6N2O2/c15-11-7-3-1-5-13-9(7)10-8(12(11)16)4-2-6-14-10/h1-6H

description: dataset for heteronuclear multiple bond coherence (HMBC)
DOI: 10.14272/kcalafivpcaxji-uhfffaoysa-n/chmo0000595
title: 13C nuclear magnetic resonance spectroscopy (13C NMR) (1,10-phenanthroline-5,6-dione)
title: InChI=1S/C12H6N2O2/c15-11-7-3-1-5-13-9(7)10-8(12(11)16)4-2-6-14-10/h1-6H

description: dataset for 13C nuclear magnetic resonance spectroscopy (13C NMR)
DOI: 10.14272/kcalafivpcaxji-uhfffaoysa-n/chmo0000593
title: 1H nuclear magnetic resonance spectroscopy (1H NMR) (1,10-phenanthroline-5,6-dione)
title: InChI=1S/C12H6N2O2/c15-11-7-3-1-5-13-9(7)10-8(12(11)16)4-2-6-14-10/h1-6H

description: dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR)
DOI: 10.15468/dl.5cvgdz
title: Occurrence Download

description: A dataset containing 556 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "TaxonKey is Erica verticillata"
 ]
}

 The dataset includes 556 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031557-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16926171
title: ApacheCM dataset-commit messages

description: ApacheCM dataset-commit messages
DOI: 10.5281/zenodo.16926172
title: ApacheCM dataset-commit messages

description: ApacheCM dataset-commit messages
DOI: 10.15468/dl.svb4qh
title: Occurrence Download

description: A dataset containing 8195 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is FASFC - Exotic vector and pathogen surveillance programme in Belgium - ticks"
 ]
}

 The dataset includes 8195 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031556-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bvfyb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bos taurus",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031560-250811113504898/datasets/export for details.
DOI: 10.15468/dl.9rttqk
title: Occurrence Download

description: A dataset containing 810 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tridentiger brevispinis",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 810 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031558-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7kf5q
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eleotris lutea)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031559-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g27t8y
title: Occurrence Download

description: A dataset containing 10762 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is MEMO-Monitoring exotic mosquitoes in Belgium"
 ]
}

 The dataset includes 10762 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031561-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xk5uk3
title: Occurrence Download

description: A dataset containing 1148 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Surveillance exotic mosquitoes in Belgium"
 ]
}

 The dataset includes 1148 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031562-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5523/bris.3o1a6rdg9ks5o2beo8260c9r85
title: Bristol 1476: Particulars of Account of Thomas Asshe, controller, 12 March to 14 April 1476: Introduction

description: Digitised Customs Account records relating to the Port of Bristol, March-April 1476

Transcription and translation, on an EXCEL spreadsheet, of the Exchequer ‘particular’ Controller's account for Bristol for a fragment covering 12 March - 14 April 1476, based on TNA, E122/19/12 and E122/174/3 (part). The spreadsheet is accompanied by a 8,500 word introduction (pdf), which includes a general explanation of the transcription process and the editorial conventions adopted. There is also a discussion of how the document was dated, its accountants and of the peculiar arrangements that stemmed from the grants to Arnald Trussell.
DOI: 10.15468/dl.t5nmrk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bos taurus",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031565-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6xpd6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mycteria leucocephala",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031563-250811113504898/datasets/export for details.
DOI: 10.15468/dl.egcde4
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mycteria leucocephala",
 "Country is United Arab Emirates",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031564-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.psych.00761
title: 社会性注意的同类别和跨类别序列依赖效应
title: 社会性注意的同类别和跨类别序列依赖效应

description: 研究背景：序列依赖效应是指个体当前的感知判断会偏向于先前感知到的刺激特征，这一效应对于个体在动态、嘈杂的环境中维持感知的连续性具有重要作用。序列依赖效应不仅广泛存在于低水平的刺激特征上(如光栅朝向)，而且被发现也存在于社会性注意的同类别社会线索(如眼睛注视方向)的加工中。社会性注意是个体通过他人的眼神等社会线索感知他人注意焦点并推断他人意图的一种能力。同样的社会性注意可以由不同的社会线索传递，目前尚不清楚序列依赖效应是否存在于跨类别的社会线索之间。研究采用“诱导刺激”范式，通过2个实验(含4个子实验)探讨了社会注意中的同类别与跨类别序列依赖效应。 数据收集：实验刺激呈现在一台24英寸LCD显示器上(分辨率为1920 × 1080像素，刷新率为60 Hz)。实验程序在MATLAB环境下利用Psychtoolbox 3工具箱编写。实验在一间光线昏暗的房间内进行，被试通过头部和下巴托固定头部位置，以确保眼睛与屏幕保持57 cm 的固定观察距离，并最大程度地减少头部运动干扰。行为数据分析：分别计算每名被试在极端左偏和极端右偏诱导刺激条件下探测刺激的心理测量函数曲线，然后采用累积高斯函数分别拟合这两种条件，计算出主观相等点(Point of subjective equality, PSE)。我们将被试判断“参考刺激比探测刺激更偏向朝左”的反应定义为“正反应”，反之为“负反应”。为绘制每种诱导刺激条件下原始的心理测量函数曲线，计算出被试在探测刺激每一个注视方向上(共7个水平)表现出正反应的百分比。随后，使用累积高斯函数分别拟合每种诱导条件的原始心理测量函数曲线上，以此获得每个被试在两种诱导条件下的 PSE 值。最后，对两种诱导条件下的 PSE 值进行配对样本 t 检验。若极端左偏注视方向诱导条件下的PSE值显著小于极端右偏注视方向诱导条件下的PSE值，则支持存在序列依赖效应。采用Cohen’s d作为t检验结果的效应量指标。 此外，使用SPSS 26.0软件对四种诱导刺激条件(极端左偏的快乐面孔、极端右偏的快乐面孔、极端左偏的愤怒面孔和向极端右偏的愤怒面孔)的PSE进行双因素重复测量方差分析(two–way repeated–measures ANOVA)。 
description: 研究背景：序列依赖效应是指个体当前的感知判断会偏向于先前感知到的刺激特征，这一效应对于个体在动态、嘈杂的环境中维持感知的连续性具有重要作用。序列依赖效应不仅广泛存在于低水平的刺激特征上(如光栅朝向)，而且被发现也存在于社会性注意的同类别社会线索(如眼睛注视方向)的加工中。社会性注意是个体通过他人的眼神等社会线索感知他人注意焦点并推断他人意图的一种能力。同样的社会性注意可以由不同的社会线索传递，目前尚不清楚序列依赖效应是否存在于跨类别的社会线索之间。研究采用“诱导刺激”范式，通过2个实验(含4个子实验)探讨了社会注意中的同类别与跨类别序列依赖效应。 数据收集：实验刺激呈现在一台24英寸LCD显示器上(分辨率为1920 × 1080像素，刷新率为60 Hz)。实验程序在MATLAB环境下利用Psychtoolbox 3工具箱编写。实验在一间光线昏暗的房间内进行，被试通过头部和下巴托固定头部位置，以确保眼睛与屏幕保持57 cm 的固定观察距离，并最大程度地减少头部运动干扰。行为数据分析：分别计算每名被试在极端左偏和极端右偏诱导刺激条件下探测刺激的心理测量函数曲线，然后采用累积高斯函数分别拟合这两种条件，计算出主观相等点(Point of subjective equality, PSE)。我们将被试判断“参考刺激比探测刺激更偏向朝左”的反应定义为“正反应”，反之为“负反应”。为绘制每种诱导刺激条件下原始的心理测量函数曲线，计算出被试在探测刺激每一个注视方向上(共7个水平)表现出正反应的百分比。随后，使用累积高斯函数分别拟合每种诱导条件的原始心理测量函数曲线上，以此获得每个被试在两种诱导条件下的 PSE 值。最后，对两种诱导条件下的 PSE 值进行配对样本 t 检验。若极端左偏注视方向诱导条件下的PSE值显著小于极端右偏注视方向诱导条件下的PSE值，则支持存在序列依赖效应。采用Cohen’s d作为t检验结果的效应量指标。 此外，使用SPSS 26.0软件对四种诱导刺激条件(极端左偏的快乐面孔、极端右偏的快乐面孔、极端左偏的愤怒面孔和向极端右偏的愤怒面孔)的PSE进行双因素重复测量方差分析(two–way repeated–measures ANOVA)。
DOI: 10.5523/bris.3ty50g05r74u123lbul1ghvabl
title: Bristol 1509-10: Particulars of account of a controller of customs, 29 September 1509 to c. 14 January 1510

description: Digitised Customs Account records relating to the Port of Bristol Sept 1509 - Jan 1510

A customs account transcribed in EXCEL format, accompanied by 5,400-word textual introduction (pdf) which dates the documents, discusses the accountants and considers some of the oddities of the account. This includes a discussion of why no wine is recorded.
DOI: 10.6084/m9.figshare.29954951.v1
title: Pdf for me

description: Nothing so far
DOI: 10.6084/m9.figshare.29954951
title: Pdf for me

description: Nothing so far
DOI: 10.15468/dl.zj9hvq
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Viet Nam, Lao People’s Democratic Republic)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Castanopsis tessellata"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031567-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16926194
title: SLR Data

description: Abstract—This research seeks to explore the implementation of Artificial Intelligence in Education (AIED) using a systematic review method. From an initial number of 290 studies discovered by the authors, 36 were selected as primary references. The study identifies three main aspects: the challenges of AI implementation, the AI tools used in education, and the importance of applying AI in the education sector. Through a comprehensive analysis, the study discovered that while AI provides advantages such as individualized learning, automated learning evaluations, and enhanced efficiency, obstacles persist, including algorithmic bias, ethical issues, and limited pedagogical insight. Furthermore, the study highlights the necessity of addressing these challenges by developing a balanced and inclusive pedagogical approach to implanting AI. By integrating AI effectively into educational practices, institutions can enhance student engagement, optimize learning experiences, and promote equitable access to quality education and learning. This study adds to current debates about how AI is influencing the future of education.
DOI: 10.5281/zenodo.16926195
title: SLR Data

description: Abstract—This research seeks to explore the implementation of Artificial Intelligence in Education (AIED) using a systematic review method. From an initial number of 290 studies discovered by the authors, 36 were selected as primary references. The study identifies three main aspects: the challenges of AI implementation, the AI tools used in education, and the importance of applying AI in the education sector. Through a comprehensive analysis, the study discovered that while AI provides advantages such as individualized learning, automated learning evaluations, and enhanced efficiency, obstacles persist, including algorithmic bias, ethical issues, and limited pedagogical insight. Furthermore, the study highlights the necessity of addressing these challenges by developing a balanced and inclusive pedagogical approach to implanting AI. By integrating AI effectively into educational practices, institutions can enhance student engagement, optimize learning experiences, and promote equitable access to quality education and learning. This study adds to current debates about how AI is influencing the future of education.
DOI: 10.15468/dl.b6zab6
title: Occurrence Download

description: A dataset containing 505585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.93628 43.40858,-3.9342 42.80889,-3.13981 42.76005,-3.12733 43.24519,-3.41847 43.40706,-3.93628 43.40858))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 505585 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031537-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umqa38
title: Occurrence Download

description: A dataset containing 734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phoebastria albatrus",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 734 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031568-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5523/bris.3qo35ooukjo2w2773gvcmnh7ql
title: Bristol 1509-10: Particulars of account of a controller of customs, 29 September 1509 to c. 14 January 1510: Supplementary Fragment

description: Digitised Customs Account records relating to the Port of Bristol; fragment of the account for 1509-10 

The account itself, transcribed into an EXCEL spreadsheet, is accompanied by a 1,000 word textual introduction (pdf) explaining how the fragment was dated.
DOI: 10.15468/dl.7xgaku
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bos taurus",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031569-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14811329
title: Dataset to "Comparative Life Cycle Assessment (LCA) of Prussian White and NVP/C-based Sodium-Ion Batteries based on Primary Laboratory Data"
DOI: 10.15468/dl.xnugp9
title: Occurrence Download

description: A dataset containing 196792 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bos taurus",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 196792 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031540-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nj2c5x
title: Occurrence Download

description: A dataset containing 92918 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Sparganium emersum"
 ]
}

 The dataset includes 92918 records from 772 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031510-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26188/28722788.v4
title: ChloroScan Supplementary files

description: <b>Supplementary files:</b>ChloroScan outputs for 4 real metagenomes and 3 benchmarking metagenomes;marker gene database and the files required during creating it;Outputs from orthofinder showing orthogroup grouping and the lists of all genomes selected.<b>Description of the workflow of marker gene database construction. </b>458 genomes were selected from NCBI GenBank to assess the phylogeny of algae plastid genomes (GenBank id can be found in marker_gene_database_files.tar.gz).Genes are firstly clustered into orthogroups. Then we select 22 conserved genes' (inferred from gene content comparisons) orthogroups and deduplicate the inparalogs which are identical to each other.We then align them using mafft and trim their alignments using clipkit. Finally the alignments are concatenated via Phykit. IQTree2 will take the concatenated supermatrix and infer a maximum likelihood tree.After generating the tree, we decorate the tree with marker genes for each node, and construct marker sets by colocalizing them based on CheckM's rationale. Finally, we pick the lineages with reasonable monophyly and save their marker gene sets to the database. When running ChloroScan, the binning module will use the profile hidden markov models (HMM files) and these selected marker sets to guide binning and assess final bins' qualities: completeness and purity.
DOI: 10.15468/dl.p29kwd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bos taurus",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031573-250811113504898/datasets/export for details.