cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14714038.v1
title: “I’ve learned to look at things in a different way”: exploring patients’ perspectives on participation in physiotherapist delivered integrated stress inoculation training and exercise for acute whiplash

description: To explore patient perspectives of the integrated intervention (intervention arm) of a recent randomised clinical trial that found clinically relevant and sustained benefits of a physiotherapist delivered integrated stress inoculation training (SIT) and exercise for people with acute whiplash-associated disorders (WAD) and at risk of poor recovery. Twelve patients from the 53 who participated in the SIT and exercise arm of a randomised controlled trial (StressModex RCT) participated in semi-structured interviews. Data were analysed using inductive thematic analysis. Five main themes were identified: “balance between the physical and psychological components,” “dealing with stress,” “coping with the injury,” “pain relief and return to function,” and “elements enhancing therapeutic alliance.” The majority of patients found the SIT techniques to be helpful in managing stress and pain, coping with their injury, and returning to function. The patients also found the exercises useful and acknowledged the importance of both the physical and the psychological aspects of whiplash injury.IMPLICATIONS FOR REHABILITATIONPatients with acute WAD at risk of poor recovery welcomed the inclusion of psychological strategies as part of physiotherapy treatment.The patients nominated both the psychological (SIT) component and exercise as assisting them with their stress, pain, and recovery.Physiotherapists could consider including strategies targeting early stress responses in their management of patients with acute WAD. Patients with acute WAD at risk of poor recovery welcomed the inclusion of psychological strategies as part of physiotherapy treatment. The patients nominated both the psychological (SIT) component and exercise as assisting them with their stress, pain, and recovery. Physiotherapists could consider including strategies targeting early stress responses in their management of patients with acute WAD.
DOI: 10.5281/zenodo.7063921
title: RailVID: A Dataset for Rail Environment Semantic

description: At present, rail transit is becoming the main means of urban and intercity fast passenger and freight transportation. Its safe operation is of great significance to protect the life of people, security of property and maintain social stability. Though the degree of intelligent traffic has been improved , there are still many safety risks in the current system by using manual hazard monitoring in the railway. Limited by the particularity and complexity of railway scenes, there are few studies on the perception and understanding of rail transit environment. In this paper, we propose a new rail transit dataset – RailVID. We use the AT615X Infrared thermography from InfiRay to collect data and record different railway scenarios, including carport, depot, and straight. We then propose an improved BiSeNet realtime semantic segmentation network for evaluation. Based on this dataset, we carry out environment perception, environment understanding, and safety decisions on the track area in front of the train, and we propose a solution for fully automatic train operation of rail transit.The dataset we provide compensates for the infrared data that is not in the existing dataset, and our data covers special weather and various conditions. Experiments show that our method achieves a higher Mean Pixel Accuracy in the collected dataset, and the processing speed also meets the real-time requirement.
DOI: 10.5281/zenodo.7063920
title: RailVID: A Dataset for Rail Environment Semantic

description: At present, rail transit is becoming the main means of urban and intercity fast passenger and freight transportation. Its safe operation is of great significance to protect the life of people, security of property and maintain social stability. Though the degree of intelligent traffic has been improved , there are still many safety risks in the current system by using manual hazard monitoring in the railway. Limited by the particularity and complexity of railway scenes, there are few studies on the perception and understanding of rail transit environment. In this paper, we propose a new rail transit dataset – RailVID. We use the AT615X Infrared thermography from InfiRay to collect data and record different railway scenarios, including carport, depot, and straight. We then propose an improved BiSeNet realtime semantic segmentation network for evaluation. Based on this dataset, we carry out environment perception, environment understanding, and safety decisions on the track area in front of the train, and we propose a solution for fully automatic train operation of rail transit.The dataset we provide compensates for the infrared data that is not in the existing dataset, and our data covers special weather and various conditions. Experiments show that our method achieves a higher Mean Pixel Accuracy in the collected dataset, and the processing speed also meets the real-time requirement.
DOI: 10.34740/kaggle/dsv/4180728
title: AutoXGB
DOI: 10.5517/ccdc.csd.cc2cjz63
title: CCDC 2191055: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, R.W. Harrington|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cjz74
title: CCDC 2191056: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, R.W. Harrington|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnfhz
title: CCDC 2194381: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnkh3
title: CCDC 2194505: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, R.W. Harrington|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6997651
title: Vesicular release probability sets the strength of individual Schaffer collateral synapses

description: This repository contains the data used to generate the figures of the manuscript entitled 'Vesicular release probability sets the strength of individual Schaffer collateral synapses' and all the data used for the quantal analysis.
DOI: 10.6084/m9.figshare.21069946.v1
title: Multi-tissue RNA-Seq analysis and long-read-based genome assembly reveal complex sex-specific gene regulation and molecular evolution in the Manila clam

description: The genome anntation.
DOI: 10.6084/m9.figshare.20445915
title: Water quality and interview survey data

description: This dataset is the result of the interview survey and water monitoring in the slums area of Bandung City, Indonesia. The interview data consists of water sources used (for drinking, cooking, and other purposes), water consumption, satisfaction, and water expenditure to assess the slum upgrading program in providing water for the households. The water sample was measured for several parameters, namely pH, TDS, Nitrate, Iron, E. coli, and Total Coliform. The survey was conducted from August to October 2021.
DOI: 10.6084/m9.figshare.20445915.v6
title: Water quality and interview survey data

description: This dataset is the result of the interview survey and water monitoring in the slums area of Bandung City, Indonesia. The interview data consists of water sources used (for drinking, cooking, and other purposes), water consumption, satisfaction, and water expenditure to assess the slum upgrading program in providing water for the households. The water sample was measured for several parameters, namely pH, TDS, Nitrate, Iron, E. coli, and Total Coliform. The survey was conducted from August to October 2021.
DOI: 10.5281/zenodo.7064028
title: ionosonde and GNSS TEC data

description: ionosonde and GNSS TEC data
DOI: 10.5281/zenodo.7064027
title: ionosonde and GNSS TEC data

description: ionosonde and GNSS TEC data
DOI: 10.6084/m9.figshare.19823473
title: snore and insulin dataset.xlsx

description: For this study, data was chosen from 2015-2NHANES (https://www.cdc.gov/nchs/nhanes/index.htm), a database designed to assess the health and nutritional status of adults and children in the United States. The initial number of individuals was 19225, however, individuals with missing body mass index (BMI) data (n=2464), insulin data (n=6014), snoring frequency data (n=5895) and participants of other races (multi-racial, n=232) were excluded. The final number of participants was 4620.
DOI: 10.25625/mts04y
title: Geochemical data for intrusive rocks of north-central and northeast Nevada

description: Synthesis of geochemical data for intrusive rocks of north-central and northeast Nevada. This compilation incorporates data for about 2,800 samples from 93 sources. Published as USGS Data Series 244 (du Bray et al., 2007).
DOI: 10.6084/m9.figshare.5631994
title: Scripts, queries, and database tables to accompany Doube et al. 2018

description: R scripts and MySQL queries, along with raw measurements, spreadsheets and database tables that form the basis of figures 3-7 and tables 1-3 of Doube et al. 2018
DOI: 10.17188/1274024
title: Materials Data on Co7Mo6 by Materials Project

description: Co7Mo6 is Frank-Kasper $\mu$ Phase structured and crystallizes in the trigonal R-3m space group. The structure is three-dimensional. there are three inequivalent Mo sites. In the first Mo site, Mo is bonded in a 6-coordinate geometry to nine Mo and six equivalent Co atoms. There are a spread of Mo–Mo bond distances ranging from 2.74–3.03 Å. There are three shorter (2.65 Å) and three longer (2.69 Å) Mo–Co bond lengths. In the second Mo site, Mo is bonded in a 6-coordinate geometry to four Mo and twelve Co atoms. There are one shorter (2.63 Å) and three longer (2.83 Å) Mo–Mo bond lengths. There are a spread of Mo–Co bond distances ranging from 2.70–2.87 Å. In the third Mo site, Mo is bonded in a 8-coordinate geometry to eight Mo and six equivalent Co atoms. The Mo–Mo bond length is 2.54 Å. All Mo–Co bond lengths are 2.59 Å. There are two inequivalent Co sites. In the first Co site, Co is bonded to seven Mo and five Co atoms to form a mixture of corner, edge, and face-sharing CoCo5Mo7 cuboctahedra. There are a spread of Co–Co bond distances ranging from 2.37–2.40 Å. In the second Co site, Co is bonded to six equivalent Mo and six equivalent Co atoms to form CoCo6Mo6 cuboctahedra that share corners with twelve equivalent CoCo5Mo7 cuboctahedra, edges with six equivalent CoCo6Mo6 cuboctahedra, and faces with eighteen equivalent CoCo5Mo7 cuboctahedra.
DOI: 10.24378/exe.4104
title: The role of colour patterns for the recognition of flowers by bees (dataset)

description: Bees discriminate between many different colours of flower petals, but it is not well understood how they perceive and learn patterns frequently found in flowers with colourful structures. We used multispectral imaging to explore chromatic cues in concentric flower patterns as they are seen through the low-resolution eyes of a honeybee. We find a diversity of colour combinations, which suggests that plants could exploit the sensory capabilities of pollinators, like bees, that learn colours easily. A consistent feature is that the surround of the pattern has a stronger chromatic contrast to the foliage background than the centre. This could potentially serve as a feature filter for the fast identification of colours in a scene as flower objects during a forager’s approach. We also trained and tested bees with three types of concentric patterns. Bees recognised and discriminated them accurately in most tests relying flexibly on both chromatic and spatial cues. Only in few situations, depending on the training stimulus, chromatic cues dominated and pattern cues were ignored. The variability of floral designs and the bees’ flexibility in recalling colour and spatial information suggest a role for colour vision in pattern processing. Implications for the signalling strategies of flowers are discussed.
description: Data for the figures in the article "The role of colour patterns for the recognition of flowers by bees" published in Philosophical Transactions of the Royal Society B: Biological Sciences.
description: The article associated with this dataset is available in ORE at: http://hdl.handle.net/10871/130686
DOI: 10.5281/zenodo.5788444
title: Ground truths for dataset search using similarity methods generated from a user evaluation

description: The dataset contains ground truths for 6 different use cases and 10 levels of agreement among 10 users participating in a user evaluation of dataset search using similarity methods in data catalogs. The data contains collections linking to dataset metadata available in https://doi.org/10.5281/zenodo.4433464.
description: This work was supported by the Czech Science Foundation (GAČR), grant number 19-01641S.
DOI: 10.6084/m9.figshare.6714137.v1
title: Sediments distribution of trace metals in a coastal lagoon (Southern Sardinia, Mediterranean Sea): assessment of contamination and ecological risk

description: Coastal lagoons are subject to several sources of contaminations. To shade light on the contamination level of the Santa Gilla lagoon (Tyrrhenian Sea) we investigated the spatial distribution of Cr, Ni, Pb, Zn and Hg in sediments and their correlation with grain size and organic matter contents. Moreover, sediment contamination levels and the ecological risk associated with metal concentration were assessed using different abiotic indicators. The lagoon is characterised by low levels of contamination, with exceptions for Pb and Hg, whose distribution reflects the position of an old chlor-alkali plant and that of an airport. These results indicate that the restoration put in place 30 years ago have not reached the expected target and that the presence of the airport deserves further attention. In the outer section of the lagoon, where clam fishery occurs, we observed low levels of contamination suggesting that such artisanal fishery could somehow help mobilising metals. We conclude that the area exposed to Hg pollution, though tentatively restored, still suffers of a potential risk of ecosystem deterioration. We pinpoint that further investigations on the mobility, bioavailability and toxicity of metals are needed to finally address the actual impairment of the Santa Gilla lagoon.
DOI: 10.5285/b57d215e-065f-7f81-e053-6c86abc01a82
title: An Alternative Framework to Assess Marine Ecosystem Functioning in Shelf Seas (AlterEco) post-recovery Seaglider data between November 2017 and April 2019 in the North Sea.

description: As part of the Alternative Framework to Assess Marine Ecosystem Functioning in Shelf Seas (AlterECO) project (NERC grant reference NE/P013902/1), Seagliders (SG537, SG620, SG510, SG579, SG602 and SG550) were deployed in a physically dynamic region of the North Sea, known to undergo seasonal oxygen depletion, between November 2017 and April 2019. These deployments are part of an 18 month observational programme using marine autonomous vehicles. During each deployment the gliders tracked repeat North-South or East-West transects close to Dogger Bank. Each glider carried a standard CTD package measuring temperature and water conductivity (salinity) and an oxygen optode sensor with additional sensors such as downwelling PAR and optical sensors for chlorophyll fluorescence and backscatter. Nitrate and phosphate sensors were also included and these data will be available separately. The deployments provided high resolution measurements of key hydrographical and biogeochemical parameters. During the 3 year programme and by developing and implementing a novel monitoring framework, AlterEco aims to deliver an improved spatio-temporal understanding of shelf sea function and provide measurements of critical indicators of marine ecosystem health over seasonal timescales.
DOI: 10.6084/m9.figshare.5634208
title: CT and XMT image data of macropod and artiodactyl limb bones to accompany Doube et al. (2018)

description: CT and X-ray microtomography images of humerus, radius, ulna, metacarpal, femur, tibia and metatarsal bones from artiodactyl (Artiodactyla) and macropod (Diprotodontia, suborder Macropodiformes) specimens.<br>Doube M, Felder AA, Chua MY, Lodhia K, Kłosowski MM, Hutchinson JR, Shefelbine SJ. 2018 Limb bone scaling in hopping macropods and quadrupedal artiodactyls. Royal Society Open Science 5, 180152. (doi:10.1098/rsos.180152) <br>
DOI: 10.17632/9bz3vshdrn.1
title: TMY for Sauce Viejo (Argentina) and Frankfurt am Main (Germany)

description: TMY of Sauce Viejo:
BCSauceViejo.mat = Solar radiation, and Ambient temperature.
relHum_SauceViejox.mat = Relative humidity.
Roofhext_SauceViejox.mat = Convective heat transfer coefficient.
TSky_SauceViejox.mat = Sky temperature.

TMY of Frankfurt am Main:
BCFrankfurt.mat = Convective heat transfer coefficient, Solar radiation, and Ambient temperature.
relHum_Frankfurt.mat = Relative humidity.
TSky_Frankfurt.mat = Sky temperature.
DOI: 10.5281/zenodo.6078462
title: Annotated images from yeast cell lifespans - Training & Test sets - DetecDiv (id01)

description: This dataset has been generated by manual annotation from timelapse images of yeast cells dividing using the DetecDiv software (see below). It contains ~250 000 images from 250 cellular lifespans (each lifespan is made of between 700 and 1000 images). Each image is classified between 6 classes: "1. unbudded", "2. small", "3. large", "4. dead", "5. empty", "6. clog", according to the subfolder of the image. Besides, this folder also contains a .mat file containing 250 timeseries of classes corresponding to the lifespan of the 200 cells. The dataset used for training (200 cellular lifespans) is in the folder /trainingset, while the dataset used for testing (50cellular lifespans) is in the folder /testset It has been used to train the network doi.org/10.5281/zenodo.5553862 from the software DetecDiv: github.com/gcharvin/DetecDiv biorxiv.org/content/10.1101/2021.10.05.463175v1 <strong>Data type</strong>: 3D microscopy images (3 stacks brightfield) (.tif) + annotation (.mat) <strong>Microscopy data type</strong>: Brightfield images with 3 stacks, each stack representing a color of RGB. <strong>Imaging</strong>: 20x 0.45 NA brightfield, 6.5µm*6.5µm sCMOS <strong>Cell type</strong>: Budding yeast wild type cell (BY4742) <strong>File format</strong>: .tif (16-bit RGB, 1 color per z-stack) + .mat <strong>Image size</strong>: 60x60x1 (Pixel size: x,y: 325 nm, 3*z: 3*1325 nm) <strong>Author(s)</strong>: Théo, ASPERT <strong>Contact email</strong>: theo.aspert@gmail.com <strong>Affiliation</strong>: IGBMC, Université de Strasbourg <strong>Funding bodies</strong>: This work was supported by the Agence Nationale pour la Recherche, the grant ANR-10-LABX-0030-INRT, a French State fund managed by the Agence Nationale de la Recherche under the frame program Investissements d'Avenir ANR-10-IDEX-0002-02.
description: {"references": ["DetecDiv, a deep-learning platform for automated cell division tracking and replicative lifespan analysis Theo Aspert, Didier Hentsch, Gilles Charvin bioRxiv 2021.10.05.463175; doi: https://doi.org/10.1101/2021.10.05.463175", "ASPERT Th\u00e9o. (2021). Trained network for classification of images from yeast cell lifespans - DetecDiv (id01) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.5553862"]}
DOI: 10.6084/m9.figshare.20926879
title: Supplementary Material for: Impact of <b><i>RNF213</i></b> c.14576G&gt;A Variant on the Development of Direct and Indirect Revascularization in Pediatric Moyamoya Disease

description: <b><i>Background:</i></b> Superficial temporal artery (direct) and encephalomyosynangiosis (indirect) revascularization may develop after combined bypass surgery in pediatric patients with moyamoya disease (MMD). However, arterial development varies widely among patients, and the underlying mechanisms remain unknown. <b><i>Objectives:</i></b> We evaluated the relationship between the development of donor arteries after bypass surgery in pediatric patients with MMD and the MMD-susceptibility gene variant c.14576G&gt;A of ring finger protein (RNF) 213. <b><i>Methods:</i></b> The data of pediatric patients with MMD (age &lt;16 years at the time of surgery) treated with combined bypass surgery between September 2013 and April 2019 were consecutively analyzed. Quantitative measurements of the superficial temporal artery (STA), deep temporal artery (DTA), and middle meningeal artery (MMA) diameters with magnetic resonance angiography (MRA) source imaging were performed preoperatively and at 6–12 months postoperatively. The postoperative caliber change ratios (CCRs) were calculated. The relationship between CCRs and <i>RNF213</i> c.14576G&gt;A status was examined. <b><i>Results:</i></b> Forty-eight hemispheres from 28 pediatric patients with MMD were examined. Three hemispheres belonged to patients with the AA genotype; 33 to patients with the AG genotype (AA/AG group); and 12 to patients with the GG genotype (GG group; wild type). The CCRs for the DTA were significantly higher in patients with RNF213 variant (AA/AG group; 2.5 ± 0.1) than in the GG group (2.0 ± 0.2) (<i>p</i> = 0.03), whereas the CCRs for the STA were significantly higher in the GG (1.6 ± 0.1) than in the AA/AG group (1.3 ± 0.6) (<i>p</i> = 0.02). There was no significant difference in the CCRs for the MMA and basilar artery between the groups. Other factors, including sex, age, and MRA grading, were not associated with the development of specific bypass development. <b><i>Conclusions:</i></b> The extent of collateral development associated with direct or indirect bypass was found to differ between the genotypes of the <i>RNF213</i> c.14576G&gt;A associated with pediatric MMD. This genetic variant correlates with the development of the disease and affects revascularization after bypass surgery in pediatric patients with MMD.