cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1170046.v2
title: Revised version of File S1 from Linheiro & Bergman 2012

description: A revised version of File S1 from Linheiro & Bergman 2012 that corrects the number of reads supporting each target site duplication. The originally reported data file provided incorrect read support counts based only on the first strain in which the TE insertion was identified, rather than the total number of read counts from all strains merged across the entire dataset. For 461 TE insertions that are present in more than one strain identified using 454 sequencing, the corrected number of reads supporting the TE insertion is higher than originally reported. The location, strand and TE family for 3,379 out of 3,386 TE insertion sites identified using 454 sequencing in Linheiro & Bergman 2012 is unchanged. For 7 out of the 3,386 TE insertions identified using 454 sequencing, properly merging reads across strains led to differences in location, strand or TE family predicted. None of the main conclusions of Linheiro & Bergman 2012 are affected by this error.
DOI: 10.6084/m9.figshare.1170046.v1
title: Revised version of File S5 from Linheiro & Bergman 2012

description: A revised version of File S5 from Linheiro & Bergman 2012 that corrects the number of reads supporting each target site duplication. The originally reported data file provided incorrect read support counts based only on the first strain in which the TE insertion was identified, rather than the total number of read counts from all strains merge across the dataset. For 461 TE insertions that are present in more than one strain identified using 454 sequencing, the corrected number of reads supporting the TE insertion is higher than originally reported. The location, strand and TE family for 3,379 out of 3,386 TE insertion sites identified using 454 sequencing in Linheiro & Bergman 2012 is unchanged. For 7 out of the 3,386 TE insertions identified using 454 sequencing, properly merging reads across strains led to differences in location, strand or TE family predicted. None of the main conclusions of Linheiro & Bergman 2012 are affected by this error.
DOI: 10.6084/m9.figshare.1170080.v5
title: Library Skills Research Master Science of Religion (2015-2016)

description: Manual Research Master Library Religious Studies University of Amsterdam, september 2015
DOI: 10.6084/m9.figshare.1170080.v7
title: Library Skills Research Master Science of Religion (draft)

description: Library Tutorial
DOI: 10.6084/m9.figshare.1170080.v6
title: Library Skills Research Master Science of Religion (Wprd.doc)

description: Manual Research Master Library Religious Studies University of Amsterdam, september 2015
DOI: 10.6084/m9.figshare.1170016
title: General knowledge data

description: Source data to the PLOS ONE paper "Sex differences in general knowledge: Meta-analysis and new data on the contribution of school-related moderators among high-school students" by Ulrich S. Tran, Agnes A. Hofer, and Martin Voracek
DOI: 10.6084/m9.figshare.1170000
title: Defects in the Acquisition of Tumor-Killing Capability of CD8+ Cytotoxic T Cells in Streptozotocin-induced Diabetic Mice

description: Diabetes mellitus has been known not only to associate with an increased risk of cancers but also heighten the mortality rate. However, whether the antitumor CD8+ T cell immunity is down-modulated in diabetic hosts remains not clear. Our data depicts that, even harboring intact proliferative capacity, streptozotocin-induced diabetic (STZ-diabetic) CD8+ T cells produce less perforin and TNFa and express less CD103 protein after stimulation. In advance, adoptive transfer of STZ-diabetic P14 CD8+ T effector cells show insufficient infiltration to B16.gp33 melanoma in vivo and inadequate production of perforin, granzyme B and TNFa in the tumor. STZ-diabetic CD8+ CTLs are neither able to eliminate tumor nor improve survival of tumor-bearing mice. In conclusion, diabetic CD8+ CTLs are crippled to infiltrate into tumors and fail to acquire tumor-killing capability. These new findings will have major impact on elucidating how diabetic CD8+ T cells are dysregulated and impeded by the acquisition of full effector functions and tumor-killing capability. With such exciting findings, we believe that our study will advance strategies of inducing protective antitumor immunity in diabetic hosts.
DOI: 10.6084/m9.figshare.1170000.v1
title: Defects in the Acquisition of Tumor-Killing Capability of CD8+ Cytotoxic T Cells in Streptozotocin-induced Diabetic Mice

description: Diabetes mellitus has been known not only to associate with an increased risk of cancers but also heighten the mortality rate. However, whether the antitumor CD8+ T cell immunity is down-modulated in diabetic hosts remains not clear. Our data depicts that, even harboring intact proliferative capacity, streptozotocin-induced diabetic (STZ-diabetic) CD8+ T cells produce less perforin and TNFa and express less CD103 protein after stimulation. In advance, adoptive transfer of STZ-diabetic P14 CD8+ T effector cells show insufficient infiltration to B16.gp33 melanoma in vivo and inadequate production of perforin, granzyme B and TNFa in the tumor. STZ-diabetic CD8+ CTLs are neither able to eliminate tumor nor improve survival of tumor-bearing mice. In conclusion, diabetic CD8+ CTLs are crippled to infiltrate into tumors and fail to acquire tumor-killing capability. These new findings will have major impact on elucidating how diabetic CD8+ T cells are dysregulated and impeded by the acquisition of full effector functions and tumor-killing capability. With such exciting findings, we believe that our study will advance strategies of inducing protective antitumor immunity in diabetic hosts.
DOI: 10.6084/m9.figshare.1169981
title: Part 1 of LTSTM data set from Sept 2001

description: This is part 1 of a low temperature STM data set from September 2001.
DOI: 10.6084/m9.figshare.1170016.v1
title: General knowledge

description: Source data to the PLOS ONE paper "Sex differences in general knowledge: Meta-analysis and new data on the contribution of school-related moderators among high-school students" by Ulrich S. Tran, Agnes. A. Hofer, and Martin Voracek
DOI: 10.6084/m9.figshare.1169941
title: F# Data: Making structured data first-class

description: Accessing data in structured formats such as XML, CSV and JSON in statically typed languages is difficult, because the languages do not understand the structure of the data. Dynamically typed languages make this syntactically easier, but lead to error-prone code. Despite numerous efforts, most of the data available on the web do not come with a schema. The only information available to developers is a set of examples, such as typical server responses. We describe an inference algorithm that infers a type of structured formats including CSV, XML and JSON. The algorithm is based on finding a common supertype of types representing individual samples (or values in collections). We use the algorithm as a basis for an F# type provider that integrates the inference into the F# type system. As a result, users can access CSV, XML and JSON data in a statically-typed fashion just by specifying a representative sample document.
DOI: 10.6084/m9.figshare.1169901
title: Raw data

description: This is the raw data for the study.
DOI: 10.6084/m9.figshare.1169927
title: data accompanying Stock et al. PLOSONE

description: Data accompanying the manuscript: Stock W., Heylen K., Sabbe K., Willems A., De Troch M. subm. The interactions of copepods with benthic bacteria and diatoms promote nitrogen retention in marine sediments. PlosOne
DOI: 10.6084/m9.figshare.1169900
title: Analysis 1

description: This is the analysis for the latency and errors between the modafinil and placebo group.
DOI: 10.6084/m9.figshare.1169901.v1
title: Raw data

description: This is the raw data for the study.
DOI: 10.6084/m9.figshare.1169981.v1
title: LTSTM data Sept 2001

description: This is low temperature STM data from Sept 2001
DOI: 10.6084/m9.figshare.1169927.v1
title: data accompanying Stock et al. PLOSONE

description: Data accompanying the manuscript: Stock W., Heylen K., Sabbe K., Willems A., De Troch M. subm. The interactions of copepods with benthic bacteria and diatoms promote nitrogen retention in marine sediments. PlosOne
DOI: 10.6084/m9.figshare.1169981.v3
title: Part 1 of LTSTM data set from Sept 2001

description: This is part 1 of a low temperature STM data set from September 2001.
DOI: 10.6084/m9.figshare.1169900.v1
title: Analysis 1

description: This is the analysis for the latency and errors between the modafinil and placebo group.
DOI: 10.6084/m9.figshare.1169981.v2
title: Part 1 of LTSTM data set from Sept 2001

description: This is part 1 of a low temperature STM data set from September 2001.
DOI: 10.6084/m9.figshare.1169817
title: Table S5 Error rate calculations

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169816
title: Table S4: Recapture information

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169813
title: Table S3 Spatial information

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169813.v2
title: Table S3 Spatial information

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169817.v1
title: Spatio-temporal wood mouse genetic structure

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169812
title: Table S2 Microsatellite data for unique individuals.

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169813.v1
title: Spatio-temporal wood mouse genetic structure

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169816.v1
title: Spatio-temporal wood mouse genetic structure

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169817.v3
title: Table S5 Error rate calculations

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169816.v3
title: Table S4: Recapture information

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169817.v2
title: Table S1 Error rate calculations

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169811
title: Table S1 Microsatellite data for all individuals

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169812.v2
title: Table S2 Microsatellite data for unique individuals.

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169816.v2
title: Recapture information

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1169812.v1
title: Spatio-temporal wood mouse genetic structure

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1168939
title: Characteristic X-ray lines of the elements

description: Tabulated characteristic X-ray lines of the elements.
DOI: 10.6084/m9.figshare.1169811.v2
title: Table S1 Microsatellite data for all individuals

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1168938
title: IUPAC vs Siegbahn notation of x-ray transitions

description: Spreadsheet tabulating the official IUPAC notation of elemental x-ray transitions vs the simpler Siegbahn notation. This table shows corresponding Siegbahn label (if any) for all elemental x-ray transitions.
DOI: 10.6084/m9.figshare.1169811.v1
title: Spatio-temporal wood mouse genetic structure

description: Spatio-temporal wood mouse genetic structure
DOI: 10.6084/m9.figshare.1168926
title: Database of human studies evaluating antidepressant drugs

description: <strong>Version 1:</strong> <strong>ClinicalTrials.gov study registers</strong> Fluoxetine<br>Sertraline<br>Mirtazapine<br>Fluvoxamine<br>Citalopram & escitalopram<br>Duloxetine<br>Paroxetine<br>Bupropion<br>Reboxetine<br>____________________________________________ Google Spreadsheet (1st URL): open - worldwide (comments allowed) ____________________________________________ <strong>Published studies / Total number of ClinicalTrials.gov registries (completed before January 1st, 2011)</strong> Sertraline: 35.4% (40 / 113) Fluoxetine: 41% (35 / 85) Paroxetine: 27.5% (36 / 131) ____________________________________________
DOI: 10.6084/m9.figshare.1168938.v1
title: IUPAC vs Siegbahn notation of x-ray transitions

description: Spreadsheet tabulating the official IUPAC notation of elemental x-ray transitions vs the simpler Siegbahn notation. This table shows corresponding Siegbahn label (if any) for all elemental x-ray transitions.
DOI: 10.6084/m9.figshare.1168884
title: Strain-specific annotation files for data in File S4 from Linheiro & Bergman 2012

description: Data in File S4 from Linheiro & Bergman 2012 are merged across all strains in the DGRP sample. This archive provides .bed files for individual strains with read support in the score field. The strain-specific data here are based on the revised Illumina dataset from Linheiro & Bergman 2012 posted here: http://dx.doi.org/10.6084/m9.figshare.683834. The union of these strain specific .bed files differs slightly from the merged .bed file corresponding to File S4 because of overlapping TE insertions sites. In the merging process, 3 TE insertion sites supported by a total of 23 reads were eliminated.
DOI: 10.6084/m9.figshare.1168885
title: Strain-specific annotation files for data in File S3 from Linheiro & Bergman 2012

description: Data in File S3 from Linheiro & Bergman 2012 are merged across all strains in the DGRP sample. This archive provides bed files with read support in the score field for individual strains. The strain-specific data here are based on the revised dataset from Linheiro & Bergman 2012 posted here: http://dx.doi.org/10.6084/m9.figshare.683836. The union of these strain specific .bed files differs slightly from the merged .bed file corresponding to File S3 (http://dx.doi.org/10.6084/m9.figshare.683836) because of overlapping TE insertions sites. In the merging process, 11 TE insertion sites supported by a total of 37 reads were eliminated.
DOI: 10.6084/m9.figshare.1168883
title: Alternate version of File S4 from Linheiro & Bergman 2012

description: An alternative version of File S4 from Linheiro & Bergman 2012 that encodes the number of DGRP strains in which the TE insertion is found in the score field of the .bed file. The data in this alternate version of File S4 are based on the revised dataset from Linheiro & Bergman 2012 posted here: http://dx.doi.org/10.6084/m9.figshare.683834
DOI: 10.6084/m9.figshare.1168938.v2
title: IUPAC vs Siegbahn notation of x-ray transitions

description: Spreadsheet tabulating the official IUPAC notation of elemental x-ray transitions vs the simpler Siegbahn notation. This table shows corresponding Siegbahn label (if any) for all elemental x-ray transitions.
DOI: 10.6084/m9.figshare.1168884.v1
title: Strain-specific annotation files corresponding to data in File S4 from Linheiro & Bergman 2012

description: Data in File S4 from Linheiro & Bergman 2012 are merged across all strains in the DGRP sample. This archive provides .bed files for individual strains with read support in the score field. The strain-specific data here are based on the revised Illumina dataset from Linheiro & Bergman 2012 posted here: http://dx.doi.org/10.6084/m9.figshare.683834. The union of these strain specific .bed files differs slightly from the merged .bed file corresponding to File S4 because of overlapping TE insertions sites. In the merging process, 3 TE insertion sites supported by a total of 23 reads were eliminated.
DOI: 10.6084/m9.figshare.1168882
title: Alternate version of File S3 from Linheiro & Bergman 2012

description: An alternative version of File S3 from Linheiro & Bergman 2012 that encodes the number of DGRP strains in which the TE insertion is found in the score field of the .bed file. The data in this alternate version of File S3 are based on the revised dataset from Linheiro & Bergman 2012 posted here: http://dx.doi.org/10.6084/m9.figshare.683836
DOI: 10.6084/m9.figshare.1168883.v1
title: Alternate version of File S4 from Linheiro & Bergman 2012

description: An alternative version of File S4 from Linheiro & Bergman 2012 that encodes the number of DGRP strains in which the TE insertion is found in the score field of the .bed file. The data in this alternate version of File S4 are based on the revised dataset from Linheiro & Bergman 2012 posted here: http://dx.doi.org/10.6084/m9.figshare.683834
DOI: 10.6084/m9.figshare.1168885.v2
title: Strain-specific annotation files for data in File S3 from Linheiro & Bergman 2012

description: Data in File S3 from Linheiro & Bergman 2012 are merged across all strains in the DGRP sample. This archive provides bed files with read support in the score field for individual strains. The strain-specific data here are based on the revised dataset from Linheiro & Bergman 2012 posted here: http://dx.doi.org/10.6084/m9.figshare.683836. The union of these strain specific .bed files differs slightly from the merged .bed file corresponding to File S3 (http://dx.doi.org/10.6084/m9.figshare.683836) because of overlapping TE insertions sites. In the merging process, 11 TE insertion sites supported by a total of 37 reads were eliminated.
DOI: 10.6084/m9.figshare.1168884.v3
title: Strain-specific annotation files for data in File S4 from Linheiro & Bergman 2012

description: Data in File S4 from Linheiro & Bergman 2012 are merged across all strains in the DGRP sample. This archive provides .bed files for individual strains with read support in the score field. The strain-specific data here are based on the revised Illumina dataset from Linheiro & Bergman 2012 posted here: http://dx.doi.org/10.6084/m9.figshare.683834. The union of these strain specific .bed files differs slightly from the merged .bed file corresponding to File S4 because of overlapping TE insertions sites. In the merging process, 3 TE insertion sites supported by a total of 23 reads were eliminated.
DOI: 10.6084/m9.figshare.1168885.v1
title: Strain-specific annotation files for data in File S3 from Linheiro & Bergman 2012

description: Data in File S3 from Linheiro & Bergman 2012 are merged across all strains in the DGRP sample. This archive provides bed files with read support in the score field for individual strains. The strain-specific data here are based on the revised dataset from Linheiro & Bergman 2012 posted here: http://dx.doi.org/10.6084/m9.figshare.683834. The union of these strain specific .bed files differs slightly from the merged .bed file corresponding to File S3 (http://dx.doi.org/10.6084/m9.figshare.683836) because of overlapping TE insertions sites. In the merging process, 11 TE insertion sites supported by a total of 37 reads were eliminated.
DOI: 10.6084/m9.figshare.1168884.v2
title: Strain-specific annotation files for data in File S4 from Linheiro & Bergman 2012

description: Data in File S4 from Linheiro & Bergman 2012 are merged across all strains in the DGRP sample. This archive provides .bed files for individual strains with read support in the score field. The strain-specific data here are based on the revised Illumina dataset from Linheiro & Bergman 2012 posted here: http://dx.doi.org/10.6084/m9.figshare.683834. The union of these strain specific .bed files differs slightly from the merged .bed file corresponding to File S4 because of overlapping TE insertions sites. In the merging process, 3 TE insertion sites supported by a total of 23 reads were eliminated.
DOI: 10.6084/m9.figshare.1168878
title: Axon Guidance as a Random Walk, 2014 CSHL Meeting Poster

description: Poster presented at the 2014 CSHL meeting "Axon Guidance, Synapse Formation & Regeneration"
DOI: 10.6084/m9.figshare.1168861
title: A compilation of larval host-plant records for six families of butterflies (Lepidoptera: Papilionoidea) from available electronic resources

description: This dataset contains 43645 association records for 3787 butterfly species and 6870 host-plant taxa from <em>Encyclopedia of Life</em> (<strong>EOL</strong>), <em>Biodiversity Heritage Library</em> (<strong>BHL</strong>), <strong><em>Wikipedia</em></strong>, <em>Butterflies of America</em> (<strong>BoA</strong>) and the <em>HOSTS database</em> at the Natural History Museum in London (<strong>HOSTS DB</strong>). Records where extracted using different techniques such as html-scraping, API requests, and text-mining (keyword and taxonomic name matching, see details in http://papilionoidea.myspecies.info/content/data-extraction-protocol). Butterfly and plant names where validated with current taxonomic checklists and web services (http://www.ucl.ac.uk/taxome/gbn/, ftp://ftp.funet.fi/pub/sci/bio/life/intro.html, http://www.theplantlist.org/). A subset of the data was validated manually to check for error in names or in the association, some records were excluded, but there are still several dubious or unvetted records in the dataset. Please use the links provided to check the sources, some might contain citations to the original references. This dataset complements data available at higher taxonomic levels (Ferrer-Paris et al. 2013) This work was supported by a <strong>2013 EOL Rubenstein Research Fellowship Award</strong>. References: Ferrer-Paris JR, Sánchez-Mercado A, Viloria ÁL, Donaldson J (2013) Congruence and Diversity of Butterfly-Host Plant Associations at Higher Taxonomic Levels. PLoS ONE 8(5): e63570. doi:10.1371/journal.pone.0063570
DOI: 10.6084/m9.figshare.1168860
title: <i>Mosaicomeryx</i> gen. nov., a ruminant mammal from the Oligocene of Europe and the significance of ‘gelocids’

description: The description of new material and the reassessment of specimens previously assigned to <i>Gelocus quercyi</i> lead us to propose a new genus for this species, <i>Mosaicomeryx</i> gen. nov. Moreover, the description of a juvenile skull and other specimens of <i>Prodremotherium elongatum</i>, and comparison with <i>Dremotherium</i>, provide evidence that these two genera are not closely related as previously thought. A phylogenetic analysis based on 40 dental, cranial and postcranial features highlights the misidentification of <i>Gelocus quercyi</i> and suggests that <i>Mosaicomeryx</i> gen. nov. is closely related to <i>Prodremotherium elongatum. Mosaicomeryx quercyi</i> and <i>Prodremotherium elongatum</i> form a monophyletic group of stem Pecora that first appeared in Western Europe by the late Early Oligocene (MP25–26), and <i>Prodremotherium elongatum</i> persisted up to MP28; following this time both taxa appear to be replaced by <i>Dremotherium</i> and <i>Amphitragulus</i>. This time interval covers two major Oligocene faunal and climate changes: Extinction 1 (MP24), associated with regression of the inner European sea, and Extinction 3/Migrations 3 (MP28), associated with Late Oligocene Warming.http://zoobank.org/urn:lsid:zoobank.org:pub:CC044612-B707-4CCD-B121-0830DA304396
DOI: 10.6084/m9.figshare.1168878.v1
title: Axon Guidance as a Random Walk, 2014 CSHL Meeting Poster

description: Poster presented at the 2014 CSHL meeting "Axon Guidance, Synapse Formation & Regeneration"