cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14708078
title: Additional file 3 of Tumor fraction-guided cell-free DNA profiling in metastatic solid tumor patients

description: Additional file 3: Table S2. Summary of the mutations found in the tumor and plasma of the 118 patients.
DOI: 10.6084/m9.figshare.14708074
title: Additional file 2 of Racial and ethnic disparities in opioid use for adolescents at US emergency departments

description: Additional file 2.
DOI: 10.6084/m9.figshare.14708071
title: Additional file 1 of Racial and ethnic disparities in opioid use for adolescents at US emergency departments

description: Additional file 1.
DOI: 10.6084/m9.figshare.14708069
title: Additional file 1 of Tumor fraction-guided cell-free DNA profiling in metastatic solid tumor patients

description: Additional file 1: Table S1. Summary of the tumor types, input cfDNA for cf-IMPACT, and the time between collection of matched tumor and plasma of the 118 patients.
DOI: 10.6084/m9.figshare.14708062
title: Additional file 1 of Anti-fibrotic potential of erythropoietin signaling on bone marrow derived fibrotic cell

description: Additional file 1:
DOI: 10.6084/m9.figshare.14707963
title: Additional file 2 of Characterizing the oligogenic architecture of plant growth phenotypes informs genomic selection approaches in a common wheat population

description: Additional file 2 Excel file containing four tables representing QTL model output and additive QTL model output for plant height and heading date in all environments.
DOI: 10.6084/m9.figshare.14707925
title: Additional file 9 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 9: Supplementary Table 9. Statistics for meadow vole WGCNA modules with significant correlations.
DOI: 10.6084/m9.figshare.14707922
title: Additional file 8 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 8: Supplementary Table 8. Statistics for prairie vole WGCNA modules with significant correlations.
DOI: 10.6084/m9.figshare.14707919
title: Additional file 7 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 7: Supplementary Table 7. WGCNA module assignments for all genes in meadow voles, along with module membership scores (MM) and module membership p-values (p.MM) for each module.
DOI: 10.6084/m9.figshare.14707916
title: Additional file 6 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 6: Supplementary Table 6. WGCNA module assignments for all genes in prairie voles, along with module membership scores (MM) and module membership p-values (p.MM) for each module.
DOI: 10.6084/m9.figshare.14707913
title: Additional file 5 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 5: Supplementary Table 5. Results of DESeq2 comparison of species x time interaction in ventral pallidum/nucleus accumbens. Positive log2FoldChange values indicate higher overall expression in prairie voles and negative log2FoldChange values indicate higher overall expression in meadow voles.
DOI: 10.6084/m9.figshare.14707910
title: Additional file 4 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 4: Supplementary Table 4. Results of DESeq2 comparison of species x time interaction in hypothalamus. Positive log2FoldChange values indicate higher overall expression in prairie voles and negative log2FoldChange values indicate higher overall expression in meadow voles.
DOI: 10.6084/m9.figshare.14707907
title: Additional file 3 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 3: Supplementary Table 3. Results of DESeq2 comparison of species x time interaction in amygdala. Positive log2FoldChange values indicate higher overall expression in prairie voles and negative log2FoldChange values indicate higher overall expression in meadow voles.
DOI: 10.6084/m9.figshare.14707904
title: Additional file 2 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 2: Supplementary Table 2. Results of DESeq2 comparison of gene expression across brain regions.
DOI: 10.6084/m9.figshare.14707898
title: Additional file 1 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 1: Supplementary Table 1. Results of DESeq2 comparison of virgin samples across species. Positive log2FoldChange values indicate higher expression in prairie voles and negative log2FoldChange values indicate higher expression in meadow voles.
DOI: 10.6084/m9.figshare.14707858
title: Additional file 2 of Comparative analysis of de novo genomes reveals dynamic intra-species divergence of NLRs in pepper

description: Additional file 2: Table S1. Reference disease resistance genes used in this study. Table S2. Statistics of raw data used in this study. Table S3. K-mer frequency of ECW and SF. Table S4. Validation of genome assembly and gene annotation using BUSCO. Table S5. Comparison of predicted genes using published annotation database. Table S6. Summary of repeat annotation. Table S7. Number of orthologs per species. Table S8. Number of specific genes containing functional domains of ECW and SF in C. annuum.Table S9. Assigned NLR group and NB-ARC type. Table S10. Statistics of classified NLRs in C. annuum.Table S11. Ortholog pair of NLRs between five accessions in C. annuum.Table S12. Statistics of enriched group of NLRs per 1 Mb window. Table S13. List of significant CNV regions for NLRs.
DOI: 10.6084/m9.figshare.14707849
title: Additional file 2 of Predicting breast cancer drug response using a multiple-layer cell line drug response network model

description: Additional file 2: Table S2. Associations between the expression level of PI3K pathway genes and PI3K inhibitor responses predicted by ML-CDN2. This table lists the PI3K pathway genes which show significant association between their expression levels with the predicted IC50 values of the PI3K pathway inhibitors.
DOI: 10.6084/m9.figshare.14707846
title: Additional file 1 of Predicting breast cancer drug response using a multiple-layer cell line drug response network model

description: Additional file 1: Table S1. Correlations of cell line pairs with respect to their CNV, mutation and pathway activity profiles, as well as their response to all tested drugs in the GDSC.
DOI: 10.6084/m9.figshare.14707793
title: Additional file 4 of Exonic variants undergoing allele-specific selection in cancers

description: Additional file 4. Data S1. List of exonic alleles that undergo somatic selection (P &lt; 0.05) with estimated selection pressure (Pi) and affected gene in four TCGA cancer types, BRCA, LUAD, COAD and PRAD.
DOI: 10.6084/m9.figshare.14707787
title: Additional file 2 of Exonic variants undergoing allele-specific selection in cancers

description: Additional file 2. Table S2. TCGA sample identifiers from four cancer types included in the study.
DOI: 10.6084/m9.figshare.14707781
title: Additional file 10 of Exonic variants undergoing allele-specific selection in cancers

description: Additional file 10. Table S7. The KEGG pathways that are significantly enriched in the genes affected by the alleles under somatic selection in four cancer types.
DOI: 10.6084/m9.figshare.14707775
title: Additional file 1 of Role of multidetector computed tomography in evaluation of resectability of pancreatic cancer

description: Additional file 1.
DOI: 10.6084/m9.figshare.14707769
title: Additional file 9 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 9: Table S8. p-values of differentially expressed genes between G. morsitans bacteriomes and midgut libraries.
DOI: 10.6084/m9.figshare.14707766
title: Additional file 8 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 8: Table S7. p-values of differentially expressed genes between G. brevipalpis bacteriomes and midgut libraries.
DOI: 10.6084/m9.figshare.14707763
title: Additional file 7 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 7: Table S6. p-values of differentially expressed genes between G. brevipalpis and G. morsitans in midgut libraries.
DOI: 10.6084/m9.figshare.14707757
title: Additional file 6 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 6: Table S5. p-values of differentially expressed genes between G. brevipalpis and G. morsitans in bacteriome libraries.
DOI: 10.6084/m9.figshare.14707754
title: Additional file 5 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 5: Table S4. p-values of differentially expressed genes between Sodalis isolates.
DOI: 10.6084/m9.figshare.14707748
title: Additional file 4 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 4: Table S3. Highly expressed Sodalis genes.
DOI: 10.6084/m9.figshare.14707745
title: Additional file 3 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 3: Table S2. Upregulation and downregulation of differentially expressed genes between Wigglesworthia isolates.
DOI: 10.6084/m9.figshare.14707742
title: Additional file 2 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 2: Table S1. Differentially expressed Wigglesworthia genes between female and male G. morsitans isolates.
DOI: 10.6084/m9.figshare.14707736
title: Additional file 10 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 10: Table S9. Primers used for the validation of Wigglesworthia differential expression though qRT-PCR.
DOI: 10.6084/m9.figshare.14707735
title: Additional file 1 of Accelerated failure-time model with weighted least-squares estimation: application on survival of HIV positives

description: Additional file 1.
DOI: 10.6084/m9.figshare.14707724
title: Additional file 1 of Targeting multiple genes containing long mononucleotide A-T repeats in lung cancer stem cells

description: Additional file 1: Table S1. The lists of down-regulated genes between CSCs and parental cells in H292 and A549 cell lines. The data were filtered with P ≤ 0.05. Table S2. The lists of down-regulated genes between PNA-A15 and their scramble in H292 and A549 cell lines. The data were filtered with P ≤ 0.05. Table S3. The lists of up-regulated genes between PNA-A15 and their scramble in H292 and A549 cell lines. The data were filtered with P ≤ 0.05.
DOI: 10.6084/m9.figshare.14707715
title: Additional file 2 of Clinical and genetic findings in patients with congenital cataract and heart diseases

description: Additional file 2: Table 1. Genomic findings in patients with cataract and heart diseases in DECIPHER database
DOI: 10.6084/m9.figshare.14708775
title: cifs crystal structure files

description: for training contact map predictor
DOI: 10.6084/m9.figshare.14708775.v1
title: cifs crystal structure files

description: for training contact map predictor
DOI: 10.6084/m9.figshare.14708259
title: S02_scRNA_seq_cluster.xlsx

description: Clustering results based on scRNA-seq
DOI: 10.6084/m9.figshare.14708259.v1
title: S02_scRNA_seq_cluster.xlsx

description: Clustering results based on scRNA-seq
DOI: 10.6084/m9.figshare.14708265.v1
title: S04_GDSC_HNSC_drug_stats.xlsx

description: Statistics of GDSC drug response in head and neck cell lines
DOI: 10.6084/m9.figshare.14708265
title: S04_GDSC_HNSC_drug_stats.xlsx

description: Statistics of GDSC drug response in head and neck cell lines
DOI: 10.6084/m9.figshare.14708271.v1
title: S03_ITTH.xlsx

description: Intra-tumor transcriptomic heterogeneity for TCGA tumors.
DOI: 10.6084/m9.figshare.14708271
title: S03_ITTH.xlsx

description: Intra-tumor transcriptomic heterogeneity for TCGA tumors.
DOI: 10.6084/m9.figshare.14708274.v1
title: S07_experiment_response.xlsx

description: Experimental drug response data
DOI: 10.6084/m9.figshare.14708274
title: S07_experiment_response.xlsx

description: Experimental drug response data
DOI: 10.6084/m9.figshare.14708277
title: S06_experimental_drug_dosage.xlsx

description: Experimental drug response data
DOI: 10.25345/c5f822
title: MassIVE MSV000087549 - GNPS BE18 Streptomyces sp secondary metabolites
title: Secondary metabolites of BE18 Streptomyces sp extracted from TSB culture. LC-MS/MS run in positive ion mode.
DOI: 10.6084/m9.figshare.14708682.v1
title: MicroRNA 26a targets Ezh2 to regulate apoptosis in mouse ovarian granulosa cells

description: In the mammalian ovary, &lt;1% of the follicles ovulate, with most undergoing degenerative atresia during ovarian follicular development. Follicular atresia is caused by the apoptosis of granulosa cells (GCs), although the precise underpinning mechanism remains unidentified. MiR-26a regulates various cellular events, including cell division, apoptotic signaling, and cell differentiation, migration, and autophagy. Here, we demonstrated that miR-26a regulated apoptosis in GCs in the mouse ovary through Ezh2, a key regulator of GC viability. We also found that transcription of miR-26a changed in response to an LH antagonist and a GnRH agonist. In addition, miR-26a transcription was downregulated following LH-induced transition of GCs to granulosa-lutein cells (GLCs). Dual-luciferase reporter assays confirmed Ezh2 as a miR-26a target. Exogenous expression in GCs of miR-26a mimics resulted in decreased Ezh2 expression, while miR-26a inhibition in GCs induced the opposite phenotype. Ezh2 silencing additionally reduced the anti-apoptotic effect of miR-26a inhibition in GCs. These data highlight the critical role of miR-26a in targeting Ezh2 and regulating apoptosis in mouse ovarian GCs. <b>Abbreviations:</b> GC: Granulosa cell; GLCs: Granulosa-lutein cells; LH: Luteinizing hormone; miRNA: MicroRNA; NC: Negative control; Cyt-c: Cytochrome c; GnRH: Gonadotropin releasing hormone; i.p.: intraperitoneal injection; cKO: conditional knock-out; WB: Western blotting; hCG: Human chorionic gonadotropin; NPC: nasopharyngeal carcinoma.
DOI: 10.6084/m9.figshare.14708682
title: MicroRNA 26a targets Ezh2 to regulate apoptosis in mouse ovarian granulosa cells

description: In the mammalian ovary, &lt;1% of the follicles ovulate, with most undergoing degenerative atresia during ovarian follicular development. Follicular atresia is caused by the apoptosis of granulosa cells (GCs), although the precise underpinning mechanism remains unidentified. MiR-26a regulates various cellular events, including cell division, apoptotic signaling, and cell differentiation, migration, and autophagy. Here, we demonstrated that miR-26a regulated apoptosis in GCs in the mouse ovary through Ezh2, a key regulator of GC viability. We also found that transcription of miR-26a changed in response to an LH antagonist and a GnRH agonist. In addition, miR-26a transcription was downregulated following LH-induced transition of GCs to granulosa-lutein cells (GLCs). Dual-luciferase reporter assays confirmed Ezh2 as a miR-26a target. Exogenous expression in GCs of miR-26a mimics resulted in decreased Ezh2 expression, while miR-26a inhibition in GCs induced the opposite phenotype. Ezh2 silencing additionally reduced the anti-apoptotic effect of miR-26a inhibition in GCs. These data highlight the critical role of miR-26a in targeting Ezh2 and regulating apoptosis in mouse ovarian GCs. <b>Abbreviations:</b> GC: Granulosa cell; GLCs: Granulosa-lutein cells; LH: Luteinizing hormone; miRNA: MicroRNA; NC: Negative control; Cyt-c: Cytochrome c; GnRH: Gonadotropin releasing hormone; i.p.: intraperitoneal injection; cKO: conditional knock-out; WB: Western blotting; hCG: Human chorionic gonadotropin; NPC: nasopharyngeal carcinoma.
DOI: 10.25919/ebes-d874
title: Simulations of high temperature aquifer thermal energy storage

description: This repository contains files relating to simulations of high-temperature aquifer thermal energy storage (HT-ATES), with injection temperatures ranging from 90 to 300 degrees Celsius. The simulated domain represents a permeable aquifer capped above and below by relatively impermeable units (caps), with axial symmetry around a single injection/production well. The wellbore and above-ground components of the system are not included in the model. The files include input files to run the simulations, raw results files, and files listing the recovery efficiency for each simulated scenario (i.e. the ratio of energy extracted to energy injected). The purpose of these simulations is to expand the range of temperatures, aquifer properties and operating parameters covered by previous studies of HT-ATES. Also included are files used for validation against previously published results.
DOI: 10.5281/zenodo.4886958
title: Engineered Geopolymer Composites (EGCs) for Sustainable Transportation Infrastructure

description: The objective of this study was to develop novel Engineered Geopolymer Composite (EGC) materials implementing locally available ingredients to produce practical and cost-effective EGCs for repair and new construction of transportation infrastructure in the region. To this end, geopolymers (GPs) were synthesized by alkali activation of metakaolin (MK) or a combination of metakaolin and fly ash (MKFA) as GP precursors. MK-GPs were activated using sodium silicate and potassium silicate solutions prepared by dissolving silica fume (SiO<sub>2</sub>) and KOH or NaOH in deionized water. MKFA-GPs replaced silica fume using fly ash and were activated using only KOH solution. GP binders, GP mortars and fiber-reinforced GP composites were manufactured and thoroughly evaluated. Based on the experimental findings, it was concluded that MK based GP matrices are promising for the development of EGCs as these GPs produce high mechanical strength at ambient curing conditions and allow for pseudo strain hardening (PSH) behavior to occur when reinforced with low contents of PVA fiber (i.e., 1.6% volume fraction). However, attaining proper fiber dispersion in MK-GP matrices was challenging. MKFA GP matrices developed in this study exhibited low mechanical strength and did not produce PSH behavior when reinforced with PVA fibers. Low strengths were associated to the low reactivity of fly ash in contrast to silica fume. A feasibility study was conducted in Ecuador to evaluate use of natural zeolite, volcanic ash, and metakaolin for the development of GP matrices, the maximum compressive strength attained was ~20 MPa.
description: Tran-SET Project: 19CLSU04
DOI: 10.5281/zenodo.4886957
title: Engineered Geopolymer Composites (EGCs) for Sustainable Transportation Infrastructure

description: The objective of this study was to develop novel Engineered Geopolymer Composite (EGC) materials implementing locally available ingredients to produce practical and cost-effective EGCs for repair and new construction of transportation infrastructure in the region. To this end, geopolymers (GPs) were synthesized by alkali activation of metakaolin (MK) or a combination of metakaolin and fly ash (MKFA) as GP precursors. MK-GPs were activated using sodium silicate and potassium silicate solutions prepared by dissolving silica fume (SiO<sub>2</sub>) and KOH or NaOH in deionized water. MKFA-GPs replaced silica fume using fly ash and were activated using only KOH solution. GP binders, GP mortars and fiber-reinforced GP composites were manufactured and thoroughly evaluated. Based on the experimental findings, it was concluded that MK based GP matrices are promising for the development of EGCs as these GPs produce high mechanical strength at ambient curing conditions and allow for pseudo strain hardening (PSH) behavior to occur when reinforced with low contents of PVA fiber (i.e., 1.6% volume fraction). However, attaining proper fiber dispersion in MK-GP matrices was challenging. MKFA GP matrices developed in this study exhibited low mechanical strength and did not produce PSH behavior when reinforced with PVA fibers. Low strengths were associated to the low reactivity of fly ash in contrast to silica fume. A feasibility study was conducted in Ecuador to evaluate use of natural zeolite, volcanic ash, and metakaolin for the development of GP matrices, the maximum compressive strength attained was ~20 MPa.
description: Tran-SET Project: 19CLSU04
DOI: 10.5281/zenodo.4555163
title: tDCS data

description: The data presented in the study are part of a larger project which assessed the influence of social stress and tDCS on working memory, supported by the Director of Defence research and development Israeli ministry Defence. The present data set contains anonymized data that supports the main findings of this study
DOI: 10.5281/zenodo.4555162
title: tDCS data

description: The data presented in the study are part of a larger project which assessed the influence of social stress and tDCS on working memory, supported by the Director of Defence research and development Israeli ministry Defence. The present data set contains anonymized data that supports the main findings of this study
DOI: 10.6084/m9.figshare.13263881.v6
title: How fast is Australia's broadband (vs Top Ten Trading Partners; Speedtest Global Index 2017-2020)?

description: This data collates an excerpt from Speedtest Global Index, over time (2018 - 2020), for Australia's Top Ten Trading Partners by imports and exports. Download speeds are in Mbps. Figures are rounded to nearest 5Mbps, except for % growth, and smallest observations.<br>Australia's Top 10 Trading Partners are sourced from:- Observatory of Economic Complexity (https://oec.world).<br>A version of this data (2018 - 19) was published in the Journal of Telecommunications and the Digital Economy (JTDE link below), Figure 3 (Ferrers 2020) in 2020, and presented at a Telsoc NBN Future Forum on Learning from International Experiences. Data from paper is at Figshare (link below).<br>File is provided in formats:- numbers with paper graph, and formulae- csv (for browsing)- png version of Figure 3 from JTDE paper.<br>This dataset is intended to be updated annually. Speedtest provides monthly updates.<br>Versions:<br>v6 - updated Dec 2020 figures. add graph 2018-2020.v5 - added link to Whirlpool, querying Australia's recent 40% jump in download vs ACCC Sept 2020 report - link belowv4 - simplified titlev3 - include graph image from JTDE paper (Figure 3) 2018 - 19.v2 - Amended title to include yearsv1 - Initial Load