cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34622/datarepositorium/lytbfs
title: Avaliação da satisfação dos formandos do MOOC "O Essencial da Gestão de Dados de Investigação": 2ª edição

description: Este dataset apresenta os dados resultantes da avaliação da 2ª edição do MOOC "O Essencial da Gestão de Dados de Investigação”, que decorreu entre 27 de novembro de 2020 e 21 de outubro de 2021, e que foi promovido pelos Serviços de Documentação e Bibliotecas da Universidade do Minho em parceria com a Secretaria-Geral da Educação e Ciência. Os dados foram recolhidos através de um inquérito que teve como objetivo avaliar a satisfação dos formandos que finalizaram, com obtenção de certificado, o MOOC - Essencial da GDI. Foram enviados os pedidos de participação no inquérito para o total de 644 formandos, tendo sido recebidas 211 respostas válidas que foram consideradas para efeito de avaliação.
DOI: 10.34622/datarepositorium/qyhhjf
title: N_CB_1 - Perspetivas multi-ator/Multi-actor perspectives

description: Grupos Focais com atores envolvidos na Prática N_CB_1
DOI: 10.6084/m9.figshare.25426141
title: TSL_QM_figdata.zip

description: raw data for figures in manuscript
DOI: 10.6084/m9.figshare.25426141.v1
title: TSL_QM_figdata.zip

description: raw data for figures in manuscript
DOI: 10.5281/zenodo.10827405
title: training dataset of honeybee
DOI: 10.5281/zenodo.10827406
title: training dataset of honeybee
DOI: 10.26179/1gnz-gm55
title: Aurora Australis Voyage V2 2007/08 Track and Underway Data
DOI: 10.25919/v375-x288
title: Synchrotron XFM data of Schoneveld_14084 (Dec 2018)

description: Diffusion profiles at olivine-spinel contacts and XANES on chromite, Norilsk, Moinui (Hawaii), Jinchuan and Mirabella. 

The purpose of this experiment is to analyse the iron speciation in chromite as well as the diffusive exchange between chromite and the minerals which enclose it (clinopyroxene, sulphides and olivine) within the world-class Ni-Cu sulphide deposits of the Noril’sk-Talnakh camp in Arctic Siberia and compare with other Ni-Cu deposits and barren localities. These deposits are thought to have formed by extensive assimilation of sulphate-rich country rocks in small magma conduits. We aim to identify mineralogical signals that arise from this genetic process.
DOI: 10.6084/m9.figshare.25426342
title: Long-term successive biochar application increases plant lignin and microbial necromass accumulation but decreases their contributions to soil organic carbon in rice–wheat cropping system.xlsx

description: The data was collected from a long-term field experiment. Four treaments consisted of rice straw-derived biochar application for each crop season at rates of 0 (BC0), 2.25 (BC2.25), 11.3 (BC11.3), and 22.5 t ha<sup>–1</sup> (BC22.5). The data contains five parts: 1) Soil properties and root biomass; 2) Soil microbial biomass: 3) Soil lignin phenols; 4) Soil amino sugars; and 5) Soil microbial necromass. The different lettes indicate singnificant differences among four treatments at <i>P</i> ＜ 0.05.
DOI: 10.26179/3k13-0797
title: Aurora Australis Voyage V3 2007/08 Track and Underway Data - CEAMARC-CASO Voyage
DOI: 10.26179/jmjm-d792
title: Aurora Australis Voyage V4 2007/08 Track and Underway Data
DOI: 10.26179/j8r7-kp80
title: Aurora Australis Voyage V6 2007/08 Track and Underway Data - CASO Voyage
DOI: 10.5281/zenodo.10828443
title: EXPLORING THE SYMBIOTIC RELATIONSHIP BETWEEN LANGUAGE TEACHING AND CULTURE: ROLE, CHALLENGES AND SOLUTIONS
DOI: 10.5281/zenodo.10828444
title: EXPLORING THE SYMBIOTIC RELATIONSHIP BETWEEN LANGUAGE TEACHING AND CULTURE: ROLE, CHALLENGES AND SOLUTIONS
DOI: 10.26179/zars-3263
title: Aurora Australis Voyage V1 2008/09 Track and Underway Data
DOI: 10.26179/ft6m-5h56
title: Aurora Australis Voyage V2 2008/09 Track and Underway Data
DOI: 10.26179/eth6-z370
title: Aurora Australis Voyage V3 2008/09 Track and Underway Data
DOI: 10.6084/m9.figshare.25427140
title: Supplementary Material for: Acute and chronic kidney dysfunction and prognosis following thrombectomy for ischemic stroke

description: Introduction. Patients with Chronic Kidney Disease (CKD) have an increased risk of stroke and CKD seems associated with worse outcome after a stroke. The main objective of our study RISOTTO was to evaluate the influence of CKD and Acute Kidney Injury (AKI) on the clinical outcome and mortality of ischemic stroke patients after thrombolysis and/or thrombectomy.
Methods. This multicenter cohort study included patients in the acute phase of ischemic stroke due to a large artery occlusion managed by thrombectomy. Functional outcome at 3 months was assessed by modified Rankin Scale (mRS).
Results. 280 patients were included in the analysis. Fifty-nine patients (22.6%) had CKD. At 3 months, CKD was associated with similar functional prognosis (mRS 3-6: 50.0% vs. 41.7%, p=0.262) but higher mortality: 24.2% vs. 9.5%, p=0.004. In univariate analysis, patients with CKD had a higher burden of white matter hyperintensities (Fazekas 1.7±0.8 vs. 1.0±0.8, p=0.002), lower initial infarcted volume with equivalent severity, and lower recanalization success (86.4% vs. 97.0%, p=0.008) compared to non-CKD patients. Forty-seven patients (20.0%) developed AKI. AKI was associated with poorer 3-month functional outcome (mRS 3-6: 63.8% vs. 49.0%, p=0.002) and mortality: 23.4% vs. 7.7%, p=0.002. In multivariate analysis, AKI appeared as an independent risk factor for poor functional outcome (mRS 3-6: adjOR 2.79 [1.11-7.02], p=0.029) and mortality: adjOR 2.52 [1.03-6.18], p=0.043 at 3 months, while CKD was not independently associated with 3-month mortality and poor neurological outcome.
Conclusion. AKI is independently associated with poorer functional outcome and increased mortality at 3 months. CKD was not an independent risk factor for 3-month mortality or poor functional prognosis.
DOI: 10.6084/m9.figshare.25427140.v1
title: Supplementary Material for: Acute and chronic kidney dysfunction and prognosis following thrombectomy for ischemic stroke

description: Introduction. Patients with Chronic Kidney Disease (CKD) have an increased risk of stroke and CKD seems associated with worse outcome after a stroke. The main objective of our study RISOTTO was to evaluate the influence of CKD and Acute Kidney Injury (AKI) on the clinical outcome and mortality of ischemic stroke patients after thrombolysis and/or thrombectomy.
Methods. This multicenter cohort study included patients in the acute phase of ischemic stroke due to a large artery occlusion managed by thrombectomy. Functional outcome at 3 months was assessed by modified Rankin Scale (mRS).
Results. 280 patients were included in the analysis. Fifty-nine patients (22.6%) had CKD. At 3 months, CKD was associated with similar functional prognosis (mRS 3-6: 50.0% vs. 41.7%, p=0.262) but higher mortality: 24.2% vs. 9.5%, p=0.004. In univariate analysis, patients with CKD had a higher burden of white matter hyperintensities (Fazekas 1.7±0.8 vs. 1.0±0.8, p=0.002), lower initial infarcted volume with equivalent severity, and lower recanalization success (86.4% vs. 97.0%, p=0.008) compared to non-CKD patients. Forty-seven patients (20.0%) developed AKI. AKI was associated with poorer 3-month functional outcome (mRS 3-6: 63.8% vs. 49.0%, p=0.002) and mortality: 23.4% vs. 7.7%, p=0.002. In multivariate analysis, AKI appeared as an independent risk factor for poor functional outcome (mRS 3-6: adjOR 2.79 [1.11-7.02], p=0.029) and mortality: adjOR 2.52 [1.03-6.18], p=0.043 at 3 months, while CKD was not independently associated with 3-month mortality and poor neurological outcome.
Conclusion. AKI is independently associated with poorer functional outcome and increased mortality at 3 months. CKD was not an independent risk factor for 3-month mortality or poor functional prognosis.
DOI: 10.5281/zenodo.10828462
title: MUSICAL WORKS CREATED BASED ON THE MUSICAL VIEWS OF ALISHER NAVOI AND HIS CREATION
DOI: 10.5281/zenodo.10828463
title: MUSICAL WORKS CREATED BASED ON THE MUSICAL VIEWS OF ALISHER NAVOI AND HIS CREATION
DOI: 10.5281/zenodo.10819730
title: Seafloor roughness reduces melting of the East Antarctic ice sheets

description: MITgcm model setup and  MATLAB script and data that support figures for "Seafloor roughness reduces melting of East Antarctic ice shelves" by Y. Liu, M. Nikurashin, and B. Pena-Molino

MITgcm model setup: 

We provide the two MITgcm model configurations of the Denman regional model, using BedMachine and SRTM15+ bathymetry datasets, described in the main text of the paper. Both simulations can be run from a pickup file corresponding to 5 years from the beginning of the simulation, when the model is well equilibrated. Complete model outputs used for the analysis in the paper can be produced by running the simulations for additional 5 years.

(Contents)



denman_0025_RYF_SHI_tides_bedmachine.zip (code, parameter files, and initial and boundary conditions to run the simulation with BedMachine bathymetry)

denman_0025_RYF_SHI_tides_srtm15.zip (code, parameter files, and initial and boundary conditions to run the simulation with SRTM15+ bathymetry)

denman_external_forcing_files.zip (3-hourly atmospheric forcing files that are used for both simulations take nearly 100Gb of disk space. Due to Zenodo size limit of 50GB, we provide the original JRA-55 forcing files and a Matlab script that interpolates them onto the regional model grid.)


(How to build and run)

The reader is referred to MITgcm documentation for instructions on how to download, compile and run the model: https://mitgcm.readthedocs.io/en/latest/getting_started/getting_started.html

MATLAB script and data:



data & script.zip includes the raw data saved in Matlab data format and the script to create the figures in the paper. Please download all files into a folder and run the script.m under MATLAB.
DOI: 10.5281/zenodo.10819731
title: Seafloor roughness reduces melting of the East Antarctic ice sheets

description: MITgcm model setup and  MATLAB script and data that support figures for "Seafloor roughness reduces melting of East Antarctic ice shelves" by Y. Liu, M. Nikurashin, and B. Pena-Molino

MITgcm model setup: 

We provide the two MITgcm model configurations of the Denman regional model, using BedMachine and SRTM15+ bathymetry datasets, described in the main text of the paper. Both simulations can be run from a pickup file corresponding to 5 years from the beginning of the simulation, when the model is well equilibrated. Complete model outputs used for the analysis in the paper can be produced by running the simulations for additional 5 years.

(Contents)



denman_0025_RYF_SHI_tides_bedmachine.zip (code, parameter files, and initial and boundary conditions to run the simulation with BedMachine bathymetry)

denman_0025_RYF_SHI_tides_srtm15.zip (code, parameter files, and initial and boundary conditions to run the simulation with SRTM15+ bathymetry)

denman_external_forcing_files.zip (3-hourly atmospheric forcing files that are used for both simulations take nearly 100Gb of disk space. Due to Zenodo size limit of 50GB, we provide the original JRA-55 forcing files and a Matlab script that interpolates them onto the regional model grid.)


(How to build and run)

The reader is referred to MITgcm documentation for instructions on how to download, compile and run the model: https://mitgcm.readthedocs.io/en/latest/getting_started/getting_started.html

MATLAB script and data:



data & script.zip includes the raw data saved in Matlab data format and the script to create the figures in the paper. Please download all files into a folder and run the script.m under MATLAB.
DOI: 10.6084/m9.figshare.25427086
title: Untitled Item

description: Here is the data from the shaking table test of the electrical battery cabinet.
DOI: 10.6084/m9.figshare.25427086.v1
title: Untitled Item

description: Here is the data from the shaking table test of the electrical battery cabinet.
DOI: 10.5281/zenodo.10828472
title: ЭКСПЕРИМЕНТАЛЬНАЯ ПСИХОЛОГИЯ  ТЕОРИЯ И ПРАКТИКА. (НА ПРИМЕРЕ ПРЕПОДАВАТЕЛЕЙ И СТУДЕНТОВ МЕДИЦИНСКОГО ИНСТИТУТА).
DOI: 10.5281/zenodo.10828473
title: ЭКСПЕРИМЕНТАЛЬНАЯ ПСИХОЛОГИЯ  ТЕОРИЯ И ПРАКТИКА. (НА ПРИМЕРЕ ПРЕПОДАВАТЕЛЕЙ И СТУДЕНТОВ МЕДИЦИНСКОГО ИНСТИТУТА).
DOI: 10.6084/m9.figshare.25427362
title: Raw data

description: Raw dataset for heart rate and MAP.
DOI: 10.6084/m9.figshare.25427362.v1
title: Raw data

description: Raw dataset for heart rate and MAP.
DOI: 10.5281/zenodo.10141871
title: Replication package for the paper "An Evolutionary Deep Learning Approach for Efficient Quantum Algorithms Transpilation"

description: Replication package for the paper "An Evolutionary Deep Learning Approach for Efficient Quantum Algorithms Transpilation", published in the 27th International Conference on the Applications of Evolutionary Computation.
DOI: 10.5281/zenodo.10141872
title: Replication package for the paper "An Evolutionary Deep Learning Approach for Efficient Quantum Algorithms Transpilation"
DOI: 10.5281/zenodo.10824488
title: Replication package for the paper "An Evolutionary Deep Learning Approach for Efficient Quantum Algorithms Transpilation"

description: Replication package for the paper "An Evolutionary Deep Learning Approach for Efficient Quantum Algorithms Transpilation", published in the 27th International Conference on the Applications of Evolutionary Computation.
DOI: 10.6084/m9.figshare.25427401.v1
title: Supplementary Material for: Conceptualizing self-harm through the experiences of psychogeriatric experts

description: Introduction. Fewer studies thus far have focused on self-harm and its specific forms among older adults. Moreover, the limited available literature applies varying terminology. The categorization of self-harm used in younger populations may not be as appropriate for this population. This means that less is known about this phenomenon in older adults. The current study aimed to reduce this gap. 
Methods. Nine Flemish psychogeriatric experts participated in a semi-structured interview. Transcripts were thematically analysed. 
Results. Themes emerging from the interviews suggest that self-harm in older adults may also include distinct elements, such as the omission of certain behaviours and engagement in indirect self-harm to cause bodily harm. According to the experts, self-harm may be engaged in to cope with emotions, express life fatigue, hasten death, and communicate a cry for help.
Discussion/Conclusion. Self-harm is prevalent in older adults and some characteristics may be specific for self-harm in an older age group. These findings may enable clinicians to be more alert to self-harm in older adults and consequently prevent serious suicidal behaviour. More research is needed to further uncover this phenomenon.
DOI: 10.21227/k80b-0n66
title: Assistment2009

description: This is the ASSISTment data that gathered in the school year 2009~2010. The skill builder data is provided.Skill builder data is also called mastery learning data. This dataset is from skill builder (mastery learning) problem sets, in which a student is considered mastered a skill when meeting certain criterion (normally set to answered 3 questions correctly in a row), and no more questions will be given after mastery.
DOI: 10.26036/cnp0005438
title: IGF2BP2-Shox2 axis regulates hippocampal- neuronal senescence to alleviate microgravity-induced recognition disturbance

description: During space travel, microgravity leads to disturbance in cognitive function, while the underlying mechanism is still unclear. Simulated microgravity mice showed neuronal age-like changes in the hippocampus and increased expression of age-related genes. In the context of microgravity, we discovered m6A modification reshapes in the hippocampal region. When paired with RNA-seq and MeRIP-seq, Shox2 was found to be a powerful regulator in hippocampal neuron that responded to microgravity. Decreased expression of senescence-associated secretory phenotype factors and improved genes related to synapses led to the restoration of memory function in the hippocampus upon increased expression of Shox2. Moreover, we discovered that IGF2BP2 was required for the m6A modification of the Shox2, and overexpressed IGF2BP2 in the hippocampus protected against both neuronal senescence and learning and memory decline brought by loss of gravity. Accordingly, our research identified the hippocampal IGF2BP2-Shox2 axis as a possible therapeutic approach to maintain cognitive function during space travel, and perhaps even during further deep space exploration in the future.
DOI: 10.26036/cnp0005446
title: low-salinity miRNA

description: low-salinity miRNA of Penaeus monodon
DOI: 10.34740/kaggle/dsv/7871686
title: US Build & Engineer Jobs: 2024
DOI: 10.6084/m9.figshare.25426315
title: Supplementary files for "Learning the Relationship Between Variants, Metabolic Fluxes and Phenotypes"

description: Our study presents a novel approach, VaMP, which integrates neural networks and metabolic models to understand the complex links between genetic variants and cancer phenotypes. By leveraging genome-scale metabolic models (GSMs) and neural networks, VaMP offers a comprehensive framework for decoding cancer biology. We demonstrate its effectiveness through validation experiments on five cancer types, showcasing its ability to identify significant genes and metabolic signatures.
DOI: 10.6084/m9.figshare.25426315.v1
title: Supplementary files for "Learning the Relationship Between Variants, Metabolic Fluxes and Phenotypes"

description: Our study presents a novel approach, VaMP, which integrates neural networks and metabolic models to understand the complex links between genetic variants and cancer phenotypes. By leveraging genome-scale metabolic models (GSMs) and neural networks, VaMP offers a comprehensive framework for decoding cancer biology. We demonstrate its effectiveness through validation experiments on five cancer types, showcasing its ability to identify significant genes and metabolic signatures.
DOI: 10.6084/m9.figshare.25426150
title: Metabolomics analysis-GCMS

description: Naïve CD4<sup>+</sup> T cells sorted by immunomagnetic beads from human PBMCs were cultured under Tfh cell skewing conditions for 5 days. The cells and untreated naïve CD4<sup>+</sup> T cells were snap-frozen and metabolites were extracted with 80% ice-cold methanol. Liquid chromatography-mass spectrometry (LC-MS) was performed on an Ultimate 3000-Velos Pro system equipped with a binary solvent delivery manager and a sample manager, coupled with an LTQ Orbitrap Mass Spectrometer equipped with an electrospray interface (ThermoFisher Scientific). The raw data were processed with progenesis QI (Waters Corporation) and Principal component analysis (PCA) and hierarchical clustering of metabolites were analyzed.
DOI: 10.25919/72wt-k139
title: Specimen images accessed on 18-3-2024
DOI: 10.26182/zvkz-e569
title: Longitudinal measures of rural Timor-Leste Children 0-5
DOI: 10.17909/wbe0-3a21
title: Data from Terry et al. 2024

description: Hubble WFC3 data used in Terry et al. 2024; updated parameters for the MOA-2007-BLG-192 microlensing system.
DOI: 10.6084/m9.figshare.25427473
title: Codes and data for "Climate regulates the effect of abrupt vegetation shifts on soil moisture on the Loess Plateau"

description: All data are pre-processed compiled data. All code are used for calculations and plots.
DOI: 10.6084/m9.figshare.25427473.v1
title: Codes and data for "Climate regulates the effect of abrupt vegetation shifts on soil moisture on the Loess Plateau"

description: All data are pre-processed compiled data. All code are used for calculations and plots.
DOI: 10.6084/m9.figshare.25427467
title: Metabolomics analysis-LCMS-neg

description: Naïve CD4<sup>+</sup> T cells sorted by immunomagnetic beads from human PBMCs were cultured under Tfh cell skewing conditions for 5 days. The cells and untreated naïve CD4<sup>+</sup> T cells were snap-frozen and metabolites were extracted with 80% ice-cold methanol. Liquid chromatography-mass spectrometry (LC-MS) was performed on an Ultimate 3000-Velos Pro system equipped with a binary solvent delivery manager and a sample manager, coupled with an LTQ Orbitrap Mass Spectrometer equipped with an electrospray interface (ThermoFisher Scientific). The raw data were processed with progenesis QI (Waters Corporation) and Principal component analysis (PCA) and hierarchical clustering of metabolites were analyzed.
DOI: 10.6084/m9.figshare.25427467.v1
title: Metabolomics analysis-LCMS-neg

description: Naïve CD4<sup>+</sup> T cells sorted by immunomagnetic beads from human PBMCs were cultured under Tfh cell skewing conditions for 5 days. The cells and untreated naïve CD4<sup>+</sup> T cells were snap-frozen and metabolites were extracted with 80% ice-cold methanol. Liquid chromatography-mass spectrometry (LC-MS) was performed on an Ultimate 3000-Velos Pro system equipped with a binary solvent delivery manager and a sample manager, coupled with an LTQ Orbitrap Mass Spectrometer equipped with an electrospray interface (ThermoFisher Scientific). The raw data were processed with progenesis QI (Waters Corporation) and Principal component analysis (PCA) and hierarchical clustering of metabolites were analyzed.
DOI: 10.6084/m9.figshare.25427470
title: Metabolomics analysis-LCMS-pos

description: Naïve CD4<sup>+</sup> T cells sorted by immunomagnetic beads from human PBMCs were cultured under Tfh cell skewing conditions for 5 days. The cells and untreated naïve CD4<sup>+</sup> T cells were snap-frozen and metabolites were extracted with 80% ice-cold methanol. Liquid chromatography-mass spectrometry (LC-MS) was performed on an Ultimate 3000-Velos Pro system equipped with a binary solvent delivery manager and a sample manager, coupled with an LTQ Orbitrap Mass Spectrometer equipped with an electrospray interface (ThermoFisher Scientific). The raw data were processed with progenesis QI (Waters Corporation) and Principal component analysis (PCA) and hierarchical clustering of metabolites were analyzed.
DOI: 10.6084/m9.figshare.25427470.v1
title: Metabolomics analysis-LCMS-pos

description: Naïve CD4<sup>+</sup> T cells sorted by immunomagnetic beads from human PBMCs were cultured under Tfh cell skewing conditions for 5 days. The cells and untreated naïve CD4<sup>+</sup> T cells were snap-frozen and metabolites were extracted with 80% ice-cold methanol. Liquid chromatography-mass spectrometry (LC-MS) was performed on an Ultimate 3000-Velos Pro system equipped with a binary solvent delivery manager and a sample manager, coupled with an LTQ Orbitrap Mass Spectrometer equipped with an electrospray interface (ThermoFisher Scientific). The raw data were processed with progenesis QI (Waters Corporation) and Principal component analysis (PCA) and hierarchical clustering of metabolites were analyzed.