cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21335/nmdc-nersc-911275918
title: UAK - Active and Passive Acoustic data - 25 Jun 2020

description: Ambient sound was measured in Storfjorden, Svalbard at frequencies from 30 to 24000 Hz at depths from 4 to 20 meters. The measurements were carried out near land and melting ice bergs. The measurements were carried out using a drifting small boat, where the engine was turned off. Thereafter, a second small boat was used for transmitting pings at 11 kHz towards the first small boat at different depths and ranges. The experiment was carried out in June 2020 by Master students under supervision, as part of a research school in the Barents Sea with K/V Svalbard, organized under the UAK project lead by the Nansen Environmental and Remote Sensing Centre.
DOI: 10.21258/1436529
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 902104
DOI: 10.21258/1444566
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891705
DOI: 10.21258/1472115
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 896966
DOI: 10.21258/1445838
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 898680
DOI: 10.21258/1473706
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 902290
DOI: 10.21258/1435646
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 897298
DOI: 10.21258/1469753
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 898237
DOI: 10.21335/nmdc-nersc-1027351247
title: UAK - Active and Passive Acoustic data - 26 Jun 2020

description: Ambient sound was measured in Storfjorden, Svalbard at frequencies from 30 to 24000 Hz at a depth of around 20 meters. The measurements were carried out in open sea at depths of about 100 metres or more. The measurements were carried out using a drifting small boat, where the engine was turned off. Thereafter, a second small boat was used for transmitting pings at 11 kHz towards the first small boat at different depths and ranges. The experiment was carried out in June 2020 by Master students under supervision, as part of a research school in the Barents Sea with K/V Svalbard, organized under the UAK project lead by the Nansen Environmental and Remote Sensing Centre.
DOI: 10.21258/1474487
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 899085
DOI: 10.21258/1461850
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 897578
DOI: 10.21258/1452340
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 896902
DOI: 10.21258/1474460
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 898210
DOI: 10.21258/1468689
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 899051
DOI: 10.21258/1475041
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 899178
DOI: 10.5281/zenodo.4312525
title: Simulated NGS read datasets for novel human virus prediction

description: This repository contains simulated Illumina read datasets for novel human virus prediction and associated metadata extracted from the Virus Host Database (https://www.genome.jp/virushostdb/). The reads are 250bp long and were simulated with Mason (https://www.seqan.de/apps/mason/) from genomes downloaded from NCBI. The training-validation-test split was done on whole viral sequences to ensure "novelty" of validation and test viruses. The training sets contain 10 million reads per class, validation sets - 1.25 million reads per class, and test sets - 1.25 million paired reads per class. The negative class sets contain reads simulated from chordate-infecting ("cho"), metazoan-infecting ("met"), eukariote-infecting ("euk") and all-nonhuman viruses. The positive class contains human-infecting viruses. The stratified dataset ("strat") contains an equal number of reads from "cho", "met but not cho", "euk but not met" and "all but not euk". Species-level datasets ("humspec", "allspec" and "chospec", with the corresponding fasta and *_species.rds files) are constructed analogously, but ensuring that all viruses of a given species were assigned to either training, val or test set. This is a stricter setting modelling a "novel viral species" scenario while reflecting within-species phenotype diversity. blast_hits.gz contains blast hits of human virome reads form Moustafa et al., 2017 (https://doi.org/10.1371/journal.ppat.1006292) blasted against our training database (see paper for details). In the second column you can find the matched label and the accession number of the matched reference. blast_labels_complete.gz contains extracted labels for all virome reads, including those without any matches. Note: one of the read headers (&gt;3c8ac47039d32b11c8fe23f588e444e9) from Moustafa et al. is slightly corrupted with null characters. You can remove them with sed 's/\x0//g' or equivalent.
DOI: 10.5281/zenodo.3630803
title: Simulated NGS read datasets for novel human virus prediction

description: This repository contains simulated Illumina read datasets for novel human virus prediction and associated metadata extracted from the Virus Host Database (https://www.genome.jp/virushostdb/). The reads are 250bp long and were simulated with Mason (https://www.seqan.de/apps/mason/) from genomes downloaded from NCBI. The training-validation-test split was done on whole viral sequences to ensure "novelty" of validation and test viruses. The training sets contain 10 million reads per class, validation sets - 1.25 million reads per class, and test sets - 1.25 million paired reads per class. The negative class sets contain reads simulated from chordate-infecting ("cho"), metazoan-infecting ("met"), eukariote-infecting ("euk") and all-nonhuman viruses. The positive class contains human-infecting viruses. The stratified dataset ("strat") contains an equal number of reads from "cho", "met but not cho", "euk but not met" and "all but not euk". Species-level datasets ("humspec", "allspec" and "chospec", with the corresponding fasta and *_species.rds files) are constructed analogously, but ensuring that all viruses of a given species were assigned to either training, val or test set. This is a stricter setting modelling a "novel viral species" scenario while reflecting within-species phenotype diversity. blast_hits.gz contains blast hits of human virome reads form Moustafa et al., 2017 (https://doi.org/10.1371/journal.ppat.1006292) blasted against our training database (see paper for details). In the second column you can find the matched label and the accession number of the matched reference. blast_labels_complete.gz contains extracted labels for all virome reads, including those without any matches. Note: one of the read headers (&gt;3c8ac47039d32b11c8fe23f588e444e9) from Moustafa et al. is slightly corrupted with null characters. You can remove them with sed 's/\x0//g' or equivalent.
DOI: 10.5281/zenodo.4311202
title: Addressable Nanoantennas with Cleared Hotspots for Single-Molecule Detection on a Portable Smartphone Microscope

description: The advent of highly sensitive photodetectors and the development of photostabilization strategies made detecting the fluorescence of single molecules a routine task in many labs around the world. However, to this day, this process requires cost-intensive optical instruments due to the truly nanoscopic signal of a single emitter. Simplifying single-molecule detection would enable many exciting applications, <em>e.g.</em> in point-of-care diagnostic settings, where costly equipment would be prohibitive. Here, we introduce addressable NanoAntennas with Cleared HOtSpots (NACHOS) that are scaffolded by DNA origami nanostructures and can be specifically tailored for the incorporation of bioassays. Single emitters placed in the NACHOS emit up to 461-fold (average of 89±7-fold) brighter enabling their detection with a customary smartphone camera and an 8-US-dollar objective lens. To prove the applicability of our system, we built a portable, battery-powered smartphone microscope and successfully carried out an exemplary single-molecule detection assay for DNA specific to antibiotic-resistant <em>Klebsiella pneumonia</em> „on the road “. Here we demonstrate the raw data on which our findings based on.
DOI: 10.5281/zenodo.4305620
title: Picosecond time-resolved antibunching measures nanoscale exciton motion, annihilation, and true number of chromophores

description: The particle-like nature of light becomes evident in the photon statistics of fluorescence of single quantum systems as photon antibunching. In multichromophoric systems, exciton diffusion and subsequent annihilation occur. These processes also yield photon antibunching but cannot be interpreted reliably. Here, we develop picosecond time-resolved antibunching (psTRAB) to identify and decode such processes. We use psTRAB to measure the true number of chromophores on well-defined multichromophoric DNA-origami structures, and precisely determine the distance-dependent rates of annihilation between excitons. Further, psTRAB allows us to measure exciton diffusion in mesoscopic H- and J-type conjugated-polymer aggregates. We distinguish between one-dimensional intra-chain and three-dimensional inter-chain exciton diffusion at different times after excitation and determine the disorder-dependent diffusion lengths. Our method provides a new lens through which excitons can be studied at the single-particle level, enabling the rational design of improved excitonic probes such as ultra-bright fluorescent nanoparticles, and materials for optoelectronic devices. Here we demonstrate the raw data of DNA Origami Microscopy on which our findings based on.
DOI: 10.5281/zenodo.4305619
title: Picosecond time-resolved antibunching measures nanoscale exciton motion, annihilation, and true number of chromophores

description: The particle-like nature of light becomes evident in the photon statistics of fluorescence of single quantum systems as photon antibunching. In multichromophoric systems, exciton diffusion and subsequent annihilation occur. These processes also yield photon antibunching but cannot be interpreted reliably. Here, we develop picosecond time-resolved antibunching (psTRAB) to identify and decode such processes. We use psTRAB to measure the true number of chromophores on well-defined multichromophoric DNA-origami structures, and precisely determine the distance-dependent rates of annihilation between excitons. Further, psTRAB allows us to measure exciton diffusion in mesoscopic H- and J-type conjugated-polymer aggregates. We distinguish between one-dimensional intra-chain and three-dimensional inter-chain exciton diffusion at different times after excitation and determine the disorder-dependent diffusion lengths. Our method provides a new lens through which excitons can be studied at the single-particle level, enabling the rational design of improved excitonic probes such as ultra-bright fluorescent nanoparticles, and materials for optoelectronic devices. Here we demonstrate the raw data of DNA Origami Microscopy on which our findings based on.
DOI: 10.21258/1441608
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 897354
DOI: 10.21258/1466104
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 897309
DOI: 10.21258/1473967
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 899481
DOI: 10.21258/1457801
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 898540
DOI: 10.21258/1450410
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 898905
DOI: 10.21258/1462670
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 899323
DOI: 10.21258/1471784
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 902269
DOI: 10.21258/1448992
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 898582
DOI: 10.21258/1455542
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 899633
DOI: 10.21258/1439429
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 897471
DOI: 10.21258/1453736
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 898742
DOI: 10.21258/1478024
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 897261
DOI: 10.21258/1453806
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 897093
DOI: 10.15468/dl.c2cx5z
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygonum vvedenskyi Sumnev."
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078913-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqmds6
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla elatior Willd. ex D.F.K.Schltdl."
 ]
}

 The dataset includes 140 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078914-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3b3sx
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyscias otopyrena (Baill.) Lowry & G.M.Plunkett"
 ]
}

 The dataset includes 222 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078915-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10905771
title: 360-info/country-centroids: Country centroids: v2024-04-01

description: Country centroids based on the geoBoundaries.org ADM0 boundaries.
If you need to make a map where countries are represented by points (like a bubble map or an arc map), you'll want centroids!
This dataset is updated on the first of the month if new data is available, or otherwise when run manually.
DOI: 10.15468/dl.fhj87k
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piper conibaccum C.DC."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078917-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u7yjcz
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina bipinnatifida (W.T.Wang) Yin Z.Wang & J.M.Li"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078916-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vevbfe
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygonum zakirovii Czevr."
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078918-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5pwpe
title: Occurrence Download

description: A dataset containing 960 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla elegans Cham. & Schltdl."
 ]
}

 The dataset includes 960 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078919-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4m63ar
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyscias pachypedicellata Lowry & Callm."
 ]
}

 The dataset includes 34 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078920-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6znp7t
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piper cordatilimbum Quisumb."
 ]
}

 The dataset includes 49 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078921-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fm49j6
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa tuberifera Faurie ex Hack."
 ]
}

 The dataset includes 177 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078922-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kyb4cy
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina bobaiensis Q.K.Li, Qiang Zhang & Wen L.Li"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078923-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25y64t
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygonum zaravschanicum Zakirov"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078924-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jtm94d
title: Occurrence Download

description: A dataset containing 85084 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ateles paniscus (Linnaeus, 1758), Sapajus apella (Linnaeus, 1758), Alouatta macconnelli Elliot, 1910, Dasyprocta leporina (Linnaeus, 1758), Chiropotes sagulatus (Traill, 1821), Saguinus martinsi (Thomas, 1912), Myoprocta acouchy (Erxleben, 1777), Choloepus didactylus (Linnaeus, 1758), Saimiri sciureus (Linnaeus, 1758), Mazama americana (Erxleben, 1777), Pithecia pithecia (Linnaeus, 1766), Puma concolor (Linnaeus, 1771), Leopardus wiedii (Schinz, 1821), Tamandua tetradactyla (Linnaeus, 1758), Nasua nasua (Linnaeus, 1766), Bradypus variegatus Schinz, 1825, Tapirus terrestris (Linnaeus, 1758), Myrmecophaga tridactyla Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 85084 records from 461 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078898-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25521439
title: Martinez et al. ocelot reintroduction model outputs. 2024 revision

description: This file provides updates model outputs based on a 2024 revision of the ocelot reintroduction model. <br>In our study, we used population viability analyses to compare different ocelot reintroduction strategies for an identified reintroduction area. A to-be established ocelot breeding program providing individual ocelots for reintroduction will likely be small. As such, we modeled ocelot reintroduction with the limitations of no more than six ocelots released as founders in an initial year and no more than four ocelots released per year for no more than 15 subsequent years. Within these limitations, we assessed projected ocelot population abundances and extinction risks after 30 years for twenty different ocelot reintroduction strategies. This workbook provides data on updated model projections from the population viability analyses.
DOI: 10.15468/dl.36mnd5
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyscias pacifica (Philipson) Lowry & G.M.Plunkett"
 ]
}

 The dataset includes 22 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078926-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erb45w
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla elvendensis Boiss."
 ]
}

 The dataset includes 19 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078925-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8dq9j
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina bogneriana (B.L.Burtt) Mich.Möller & A.Weber"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078927-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zef29
title: Occurrence Download

description: A dataset containing 339 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polymeria pusilla R.Br."
 ]
}

 The dataset includes 339 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078929-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7da73
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa tzvelevii Prob."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078930-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4echj4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piper cornilimbum C.DC."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078928-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q4ehqm
title: Occurrence Download

description: A dataset containing 18781 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Potentilla supina L.)"
 ]
}

 The dataset includes 18781 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078931-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.