cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5752881
title: Selection of Serial Publications to Support Research in Nanotechnologies

description: A comprehensive technique for selection of the world's scientific periodicals apposite for a quality research on specific natural scientific and technical areas and based on the use of citations analysis – accounting both citedness indexes of periodicals in the selected specialized journals and their citing these selected specialized journals – has been applied in the study, which practical results are presented in the Table. A list of world journals and other serial publications has been obtained which is supposed to be applied in creating the appropriate constituent of the scientific information environment for the research in nanotechnologies. After application of “threshold” values, merging, and elimination data the final list consisted of 572 items.
DOI: 10.6084/m9.figshare.5752881.v1
title: Selection of Serial Publications to Support Research in Nanotechnologies

description: A comprehensive technique for selection of the world's scientific periodicals apposite for a quality research on specific natural scientific and technical areas and based on the use of citations analysis – accounting both citedness indexes of periodicals in the selected specialized journals and their citing these selected specialized journals – has been applied in the study, which practical results are presented in the Table. A list of world journals and other serial publications has been obtained which is supposed to be applied in creating the appropriate constituent of the scientific information environment for the research in nanotechnologies. After application of “threshold” values, merging, and elimination data the final list consisted of 572 items.
DOI: 10.6084/m9.figshare.5752872
title: On sourcing and stocking policies in a two-echelon, multiple location, repairable parts supply chain

description: This research develops policies to minimize spare part purchases and repair costs for maintaining a fleet of mission-critical systems that operate from multiple forward (base) locations within a two-echelon repairable supply chain with a central depot. We take a tactical planning perspective to support periodic decisions for spare part purchases and repair sourcing, where the repair capabilities of the various locations are overlapping. We consider three policy classes: a central policy, where all repairs are sourced to a central depot; a local policy, whereby failures are repaired at forward locations; and a mixed policy, where a fraction of the parts is repaired at the bases and the remainder is repaired at the depot. Parts are classified based on their repair cost and lead time. For each part class, we suggest a solution that is based on threshold policies or on the use of a heuristic solution algorithm that extends the industry standard of marginal analysis to determine spare parts positioning by including repair fraction sourcing. A validation study shows that the suggested heuristic performs well compared to an exhaustive search (an average 0.2% difference in cost). An extensive numerical study demonstrates that the algorithm achieves costs which are lower by about 7–12% on average, compared to common, rule-based sourcing policies.
DOI: 10.6084/m9.figshare.5752872.v1
title: On sourcing and stocking policies in a two-echelon, multiple location, repairable parts supply chain

description: This research develops policies to minimize spare part purchases and repair costs for maintaining a fleet of mission-critical systems that operate from multiple forward (base) locations within a two-echelon repairable supply chain with a central depot. We take a tactical planning perspective to support periodic decisions for spare part purchases and repair sourcing, where the repair capabilities of the various locations are overlapping. We consider three policy classes: a central policy, where all repairs are sourced to a central depot; a local policy, whereby failures are repaired at forward locations; and a mixed policy, where a fraction of the parts is repaired at the bases and the remainder is repaired at the depot. Parts are classified based on their repair cost and lead time. For each part class, we suggest a solution that is based on threshold policies or on the use of a heuristic solution algorithm that extends the industry standard of marginal analysis to determine spare parts positioning by including repair fraction sourcing. A validation study shows that the suggested heuristic performs well compared to an exhaustive search (an average 0.2% difference in cost). An extensive numerical study demonstrates that the algorithm achieves costs which are lower by about 7–12% on average, compared to common, rule-based sourcing policies.
DOI: 10.6084/m9.figshare.5752848
title: "Ensemble Prediction of a Halo Coronal Mass Ejection Using Heliospheric Imagers" - model results and supplementary data

description: These files contain results from the study "Ensemble Prediction of a Halo Coronal Mass Ejection Using Heliospheric Imagers" by T. Amerstorfer et al. submitted to AGU Space Weather.<br>The file ElEvoHI_results.txt contains the resulting parameters of 339 model runs to predict the arrival time and speed of a coronal mass ejection at 0.4 and 1 AU.<br>The file mass_measurements.txt lists the CME mass derived from LASCO C2 and C3 images.<br>The file stereo-bHIelongation.txt contains the CME elongation measurements from STEREO-B heliospheric imager observations.<br>The file ElEvoHI_ensemble.mp4 is an animated visualization of the ensemble run. The black curves correspond to the CME shapes leading to the best prediction at MESSENGER and STEREO-B, respectively. The dark gray area is the entity of all other runs from the ensemble. The solid blue line marks the HI elongation measurements used for prediction. When the line is dashed, the HI observations are no longer used for prediction but can be seen as a proof of the modeled CME evolution.<br>The file softscruberrs.pdf contains two figures displaying the soft scrub error at the Spitzer Space Telescope during the studied time range.<br>SScrub_data_Spitzer.ecsv lists the numbers of soft scrub errors at Spitzer.<br>
DOI: 10.6084/m9.figshare.5752848.v1
title: "Ensemble Prediction of a Halo Coronal Mass Ejection Using Heliospheric Imagers" - model results and supplementary data

description: These files contain results from the study "Ensemble Prediction of a Halo Coronal Mass Ejection Using Heliospheric Imagers" by T. Amerstorfer et al. submitted to AGU Space Weather.<br>The file ElEvoHI_results.txt contains the resulting parameters of 339 model runs to predict the arrival time and speed of a coronal mass ejection at 0.4 and 1 AU.<br>The file mass_measurements.txt lists the CME mass derived from LASCO C2 and C3 images.<br>The file stereo-bHIelongation.txt contains the CME elongation measurements from STEREO-B heliospheric imager observations.<br><br>
DOI: 10.6084/m9.figshare.5752848.v2
title: "Ensemble Prediction of a Halo Coronal Mass Ejection Using Heliospheric Imagers" - model results and supplementary data

description: These files contain results from the study "Ensemble Prediction of a Halo Coronal Mass Ejection Using Heliospheric Imagers" by T. Amerstorfer et al. submitted to AGU Space Weather.<br>The file ElEvoHI_results.txt contains the resulting parameters of 339 model runs to predict the arrival time and speed of a coronal mass ejection at 0.4 and 1 AU.<br>The file mass_measurements.txt lists the CME mass derived from LASCO C2 and C3 images.<br>The file stereo-bHIelongation.txt contains the CME elongation measurements from STEREO-B heliospheric imager observations.<br>The file ElEvoHI_ensemble.mp4 is an animated visualization of the ensemble run. The black curves correspond to the CME shapes leading to the best prediction at MESSENGER and STEREO-B, respectively. The dark gray area is the entity of all other runs from the ensemble. The solid blue line marks the HI elongation measurements used for prediction. When the line is dashed, the HI observations are no longer used for prediction but can be seen as a proof of the modeled CME evolution.<br>
DOI: 10.15131/shef.data.5752845
title: On the road again: the geography and characteristics of American commuter megaregions (supplementary files for book chapter)

description: This repository contains data relating to our book chapter on the anatomy of US megaregions, entitled: "On the road again: the geography and characteristics of American commuter megaregions".<br>We are sharing the full datasets here for others to explore.<br>There are four different files here, as below.<br>1. megaregions_data_master_011217.xlsx - this file contains full details of the megaregions in relation to their characteristics - including demographics and transport modes.<br>2. commutes-matrix.jpg - this is a graphic from the associated paper which shows the strength of connection between different megaregions.<br>3. megaregions-and-cities.jpg - this is a graphic which shows the shape and size of megaregions in addition to their major cities.<br>4. Megaregion Interflows.xlsx - this file provides more detail on the number of commutes between the megaregions.<br><br>Please get in touch if you have any questions. You can find our previous work on this topic in another figshare repository, here: https://figshare.shef.ac.uk/articles/United_States_Commutes_and_Megaregions_data_for_GIS/4110156<br><br>
DOI: 10.6084/m9.figshare.5752812
title: MSA nuclear receptors

description: Nuclear receptor sequences were identified in the <i>Danio rerio</i> and <i>Gadus morhua</i> proteomes (downloaded from ENSEMBL) by performing an HMM search (hmmer) with the Pfam profile for the ligand-binding domain of nuclear hormone receptor (PF00104). The identified sequences were aligned using ClustalX 2.1 with default parameters.
DOI: 10.6084/m9.figshare.5752812.v1
title: MSA nuclear receptors

description: Nuclear receptor sequences were identified in the <i>Danio rerio</i> and <i>Gadus morhua</i> proteomes (downloaded from ENSEMBL) by performing an HMM search (hmmer) with the Pfam profile for the ligand-binding domain of nuclear hormone receptor (PF00104). The identified sequences were aligned using ClustalX 2.1 with default parameters.
DOI: 10.6084/m9.figshare.5752797
title: Nematode lipid.xlsx

description: A datatset of nematode community fatty acid profiles, extracted from 150 forest litter samples with differing forest management intensity in Germany.
DOI: 10.6084/m9.figshare.5752773
title: Qualitative results of stakeholder focus group sessions on Belgian hospital collaboration models

description: Data tables containing summarized qualitative results of seven semistructured focus groups sessions addressing hospital collaboration models in Belgium. These took the form of consultations with stakeholders invited from Belgian hospitals and special interest groups.<br>All files are in .docx format, accessible via MS Word or open office applications:<br><b>Table 3. submissie. docx.docx</b> - Advantages and disadvantages of integrated health systems, from the perspective of the stakeholders<b>Table 4. submissie. docx.docx</b> - Advantages and disadvantages of a coordinated network, from the perspective of the stakeholders<br><b>Table 5. submissie. docx.docx</b> - Advantages and disadvantages of a joint venture, from the perspective of the stakeholders<br><br>Each focus group aimed to include 8-12 participants organized by stakeholder groups. The groups are as follows:- hospital management (chief executive officers and chief medical officers)- chairs of medical councils or their representatives, chairs of hospital boards,- special interest groups (physicians’ associations from hospitals and primary care, hospital federations, federations of hospital directors, and federations of health care professionals)<br>Selection of the participants was based on hospital characteristics (large or small; private or public; university or not; national, regional, or local; etc.) resulting in a balanced and representative combination of participants from Belgian hospital stakeholder groups.<br>See related publication for the discussion topic list.<br>Background: Hospitals are increasingly parts of larger care collaborations, rather than individual entities. Organizing and operating these collaborations is challenging; a significant number do not succeed, as it is difficult to align the goals of the partners. Little research has however focused on stakeholders' views of hospital collaboration forms, and how these views can be aligned with those of hospital management. The study that produced these data explores Belgian hospital stakeholders' perspectives on factors that affect hospital collaborations, as well as their perspectives on different models of Belgian interhospital collaboration. Method: Qualitative study using focus groups. Results: A total of 55 hospital stakeholders (hospital managers and chairs of medical councils, hospital boards, special interest groups) participated in seven focus group sessions. Participants discussed viewpoints, barriers, and facilitators regarding hospital collaboration models (health systems, networks, and joint ventures). Collaboration in health care is challenging, as the goals of the different stakeholder groups are partly parallel, but sometimes in conflict. Successful collaboration requires trust and commitment.<br>
DOI: 10.6084/m9.figshare.5752773.v1
title: Qualitative results of stakeholder focus group sessions on Belgian hospital collaboration models

description: Data tables containing summarized qualitative results of seven semistructured focus groups sessions addressing hospital collaboration models in Belgium. These took the form of consultations with stakeholders invited from Belgian hospitals and special interest groups.<br>All files are in .docx format, accessible via MS Word or open office applications:<br><b>Table 3. submissie. docx.docx</b> - Advantages and disadvantages of integrated health systems, from the perspective of the stakeholders<b>Table 4. submissie. docx.docx</b> - Advantages and disadvantages of a coordinated network, from the perspective of the stakeholders<br><b>Table 5. submissie. docx.docx</b> - Advantages and disadvantages of a joint venture, from the perspective of the stakeholders<br><br>Each focus group aimed to include 8-12 participants organized by stakeholder groups. The groups are as follows:- hospital management (chief executive officers and chief medical officers)- chairs of medical councils or their representatives, chairs of hospital boards,- special interest groups (physicians’ associations from hospitals and primary care, hospital federations, federations of hospital directors, and federations of health care professionals)<br>Selection of the participants was based on hospital characteristics (large or small; private or public; university or not; national, regional, or local; etc.) resulting in a balanced and representative combination of participants from Belgian hospital stakeholder groups.<br>See related publication for the discussion topic list.<br>Background: Hospitals are increasingly parts of larger care collaborations, rather than individual entities. Organizing and operating these collaborations is challenging; a significant number do not succeed, as it is difficult to align the goals of the partners. Little research has however focused on stakeholders' views of hospital collaboration forms, and how these views can be aligned with those of hospital management. The study that produced these data explores Belgian hospital stakeholders' perspectives on factors that affect hospital collaborations, as well as their perspectives on different models of Belgian interhospital collaboration. Method: Qualitative study using focus groups. Results: A total of 55 hospital stakeholders (hospital managers and chairs of medical councils, hospital boards, special interest groups) participated in seven focus group sessions. Participants discussed viewpoints, barriers, and facilitators regarding hospital collaboration models (health systems, networks, and joint ventures). Collaboration in health care is challenging, as the goals of the different stakeholder groups are partly parallel, but sometimes in conflict. Successful collaboration requires trust and commitment.<br>
DOI: 10.6084/m9.figshare.5752584
title: Additional file 7: Table S5. of Cribriform and intraductal prostate cancer are associated with increased genomic instability and distinct genomic alterations

description: Significant CNAs identified by logistic regression analysis accounting for genomic instability as confounding factor in the TCGA dataset. Columns contain: Symbol – official gene symbol, Chromosome / Start / End – genomic coordinates of gene locus, p-alue / FDR – p-value of logistic regression before and after correction for multiple tests via FDR, odds ratio / 95% CI – odds ratio and 95% confidence interval based on logistic regression. Deletions and amplifications are presented in the same format and listed separately. All entries are sorted by genomic location. (XLS 266 kb)
DOI: 10.6084/m9.figshare.5752584.v1
title: Additional file 7: Table S5. of Cribriform and intraductal prostate cancer are associated with increased genomic instability and distinct genomic alterations

description: Significant CNAs identified by logistic regression analysis accounting for genomic instability as confounding factor in the TCGA dataset. Columns contain: Symbol – official gene symbol, Chromosome / Start / End – genomic coordinates of gene locus, p-alue / FDR – p-value of logistic regression before and after correction for multiple tests via FDR, odds ratio / 95% CI – odds ratio and 95% confidence interval based on logistic regression. Deletions and amplifications are presented in the same format and listed separately. All entries are sorted by genomic location. (XLS 266 kb)
DOI: 10.6084/m9.figshare.5752572
title: Additional file 5: Table S4. of Cribriform and intraductal prostate cancer are associated with increased genomic instability and distinct genomic alterations

description: Gene-wise copy number alterations detected in the TCGA cohort and validated in the CPC-GENE cohort using a ≥ 30% CR/IDC threshold to stratify samples. Columns contain: Symbol – official gene symbol, Chromosome / Start / End – genomic coordinates of gene locus, FDR – Boschloo’s exact test p-value after correcting for multiple tests using the Benjamini–Hochberg procedure for specified dataset. amplifications_case – number of CR/IDC positive samples in specified dataset with an amplification spanning gene locus, amplifications_control – number of control samples in specified dataset with an amplification spanning gene locus, cases – total number of CR/IDC positive samples in specified dataset, controls – total number of control samples in specified dataset. All entries are sorted by genomic location. Deletions are presented in the same format and listed separately. (PDF 12328 kb)
DOI: 10.6084/m9.figshare.5752572.v1
title: Additional file 5: Table S4. of Cribriform and intraductal prostate cancer are associated with increased genomic instability and distinct genomic alterations

description: Gene-wise copy number alterations detected in the TCGA cohort and validated in the CPC-GENE cohort using a ≥ 30% CR/IDC threshold to stratify samples. Columns contain: Symbol – official gene symbol, Chromosome / Start / End – genomic coordinates of gene locus, FDR – Boschloo’s exact test p-value after correcting for multiple tests using the Benjamini–Hochberg procedure for specified dataset. amplifications_case – number of CR/IDC positive samples in specified dataset with an amplification spanning gene locus, amplifications_control – number of control samples in specified dataset with an amplification spanning gene locus, cases – total number of CR/IDC positive samples in specified dataset, controls – total number of control samples in specified dataset. All entries are sorted by genomic location. Deletions are presented in the same format and listed separately. (PDF 12328 kb)
DOI: 10.6084/m9.figshare.5752566
title: Additional file 4: Table S3. of Cribriform and intraductal prostate cancer are associated with increased genomic instability and distinct genomic alterations

description: Gene-wise copy number alterations associated with CR/IDC growth using a ≥ 30% CR/IDC threshold to stratify samples. Columns contain: Symbol – official gene symbol, Chromosome / Start / End – genomic coordinates of gene locus, FDR – Boschloo’s exact test p-value after correcting for multiple tests using the Benjamini–Hochberg procedure. amplifications_case – number of CR/IDC positive samples with an amplification spanning gene locus, amplifications_control – number of control samples with an amplification spanning gene locus, cases – total number of CR/IDC positive samples, controls – total number of control samples. All entries are sorted by genomic location. Deletions are presented in the same format and listed separately. (XLS 161 kb)
DOI: 10.6084/m9.figshare.5752566.v1
title: Additional file 4: Table S3. of Cribriform and intraductal prostate cancer are associated with increased genomic instability and distinct genomic alterations

description: Gene-wise copy number alterations associated with CR/IDC growth using a ≥ 30% CR/IDC threshold to stratify samples. Columns contain: Symbol – official gene symbol, Chromosome / Start / End – genomic coordinates of gene locus, FDR – Boschloo’s exact test p-value after correcting for multiple tests using the Benjamini–Hochberg procedure. amplifications_case – number of CR/IDC positive samples with an amplification spanning gene locus, amplifications_control – number of control samples with an amplification spanning gene locus, cases – total number of CR/IDC positive samples, controls – total number of control samples. All entries are sorted by genomic location. Deletions are presented in the same format and listed separately. (XLS 161 kb)
DOI: 10.6084/m9.figshare.5752557
title: Additional file 3: Table S2. of Cribriform and intraductal prostate cancer are associated with increased genomic instability and distinct genomic alterations

description: Gene-wise copy number alterations associated with CR/IDC growth using any CR/IDC presence for patient stratification. Columns contain: Symbol – official gene symbol, Chromosome / Start / End – genomic coordinates of gene locus, FDR – Boschloo’s exact test p-value after correcting for multiple tests using the Benjamini–Hochberg procedure. amplifications_case – number of CR/IDC positive samples with an amplification spanning gene locus, amplifications_control – number of control samples with an amplification spanning gene locus, cases – total number of CR/IDC positive samples, controls – total number of control samples. All entries are sorted by genomic location. Deletions are presented in the same format and listed separately. (XLS 226 kb)
DOI: 10.6084/m9.figshare.5752557.v1
title: Additional file 3: Table S2. of Cribriform and intraductal prostate cancer are associated with increased genomic instability and distinct genomic alterations

description: Gene-wise copy number alterations associated with CR/IDC growth using any CR/IDC presence for patient stratification. Columns contain: Symbol – official gene symbol, Chromosome / Start / End – genomic coordinates of gene locus, FDR – Boschloo’s exact test p-value after correcting for multiple tests using the Benjamini–Hochberg procedure. amplifications_case – number of CR/IDC positive samples with an amplification spanning gene locus, amplifications_control – number of control samples with an amplification spanning gene locus, cases – total number of CR/IDC positive samples, controls – total number of control samples. All entries are sorted by genomic location. Deletions are presented in the same format and listed separately. (XLS 226 kb)