cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14224250.v1
title: Data_Matrix_52

description: 52taxa13NNaligned with transXConcatenate with Phylosuite
DOI: 10.25345/c5t22d
title: MassIVE MSV000087056 - Quantification_isobutanol_GCMS
title: Quantification of produced isobutanol by engineered E. coli strain
DOI: 10.6084/m9.figshare.14224178
title: 19505527.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14224178.v1
title: 19505527.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14224187
title: 19505602.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14224187.v1
title: 19505602.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.5281/zenodo.4608395
title: Dagstuhl ChoirSet

description: Dagstuhl ChoirSet is a multitrack dataset of a cappella choral music designed to support MIR research on choral singing. The dataset includes recordings of an amateur vocal ensemble performing two choir pieces in full choir and quartet settings. The audio data was recorded during an MIR seminar at Schloss Dagstuhl using different close-up microphones to capture the individual singers’ voices. A detailed documentation of this dataset can be found in: Sebastian Rosenzweig, Helena Cuesta, Christof Weiß, Frank Scherbaum, Emilia Gómez, and Meinard Müller:<br> <strong>Dagstuhl ChoirSet: A Multitrack Dataset for MIR Research on Choral Singing</strong>.<br> Transactions of the International Society for Music Information Retrieval, 3(1), pp. 98–110, 2020.<br> DOI: https://doi.org/10.5334/tismir.48
DOI: 10.21227/6xcz-sc77
title: ELECTRICITY DEMAND FORECASTING

description: C
DOI: 10.6084/m9.figshare.14223074
title: 19505343.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14223074.v1
title: 19505343.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14223077
title: Mga-like, a global transcriptional regulator, transcription inhibits the biosynthesis of capsule and P-Choline and governs the virulence of Streptococcus pneumoniae

description: Global transcriptional regulators are prevalent in Gram-positive pathogens. The transcriptional regulators of the Mga/AtxA family can effectively regulate the expression of target genes by directly or indirectly binding to the regulatory region of target genes， resulting in the coordinated expression of virulence factors in the pathogenic process of pathogens. The spd_1587 gene of<i> S. pneumoniae</i> D39 encodes a protein called Mga-like that has sequence similarity to global transcriptional regulators of the Mga/AtxA family.
DOI: 10.6084/m9.figshare.14223077.v1
title: Mga-like, a global transcriptional regulator, transcription inhibits the biosynthesis of capsule and P-Choline and governs the virulence of Streptococcus pneumoniae

description: Global transcriptional regulators are prevalent in Gram-positive pathogens. The transcriptional regulators of the Mga/AtxA family can effectively regulate the expression of target genes by directly or indirectly binding to the regulatory region of target genes， resulting in the coordinated expression of virulence factors in the pathogenic process of pathogens. The spd_1587 gene of<i> S. pneumoniae</i> D39 encodes a protein called Mga-like that has sequence similarity to global transcriptional regulators of the Mga/AtxA family.
DOI: 10.17632/zk46ncc396.1
title: Data for: Carbon isotope systematics (wood and bulk organic matter) in an Oligocene deep syn-rift lake, Gulf of Tonkin, Vietnam: Implications for in-lake isotope fractionation and correlation of the carbon isotope stratigraphy to the global record

description: Carbon isotope (wood and bulk organic matter) from an Oligocene deep syn-rift lake, Gulf of Tonkin, Vietnam
DOI: 10.17632/ywy3xngjyk.1
title: Data for: Theoretical Isotope Fractionation of Cadmium during Complexation with Organic Ligands
DOI: 10.6084/m9.figshare.14224184
title: adcpPIRATA.zip

description: ADCP raw and processed data (using CODAS) from the four PIRATA (Prediction and Research moored Array in the Tropical Atlantic; Servain et al., 1998; Bourlès et al., 2008) transects used in the article "Revisiting the South Equatorial Current".<br>
DOI: 10.6084/m9.figshare.14224184.v1
title: adcpPIRATA.zip

description: ADCP raw and processed data (using CODAS) from the four PIRATA (Prediction and Research moored Array in the Tropical Atlantic; Servain et al., 1998; Bourlès et al., 2008) transects used in the article "Revisiting the South Equatorial Current".<br>
DOI: 10.6084/m9.figshare.14224268
title: 19505671.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14224268.v1
title: 19505671.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14224280
title: 19505855.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14224280.v1
title: 19505855.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14224319.v1
title: MiQuit_SWAT_Data.csv

description: The data set relating to the MiQuit3 SWAT: prenotification and personalisation of text messages in a smoking cessation programme for pregnant women.
DOI: 10.6084/m9.figshare.14224319
title: MiQuit_SWAT_Data.csv

description: The data set relating to the MiQuit3 SWAT: prenotification and personalisation of text messages in a smoking cessation programme for pregnant women.
DOI: 10.5517/ccdc.csd.cc24cbrm
title: CCDC 1977110: Experimental Crystal Structure Determination

description: Related Article: Nilesh R. Mote, Shahaji R. Gaikwad, Kishor V. Khopade, Rajesh G. Gonnade, Samir H. Chikkali|2021|Dalton Trans.|50|3717|doi:10.1039/D1DT00093D
DOI: 10.5517/ccdc.csd.cc24cbsn
title: CCDC 1977111: Experimental Crystal Structure Determination

description: Related Article: Nilesh R. Mote, Shahaji R. Gaikwad, Kishor V. Khopade, Rajesh G. Gonnade, Samir H. Chikkali|2021|Dalton Trans.|50|3717|doi:10.1039/D1DT00093D
DOI: 10.5517/ccdc.csd.cc24cbtp
title: CCDC 1977112: Experimental Crystal Structure Determination

description: Related Article: Nilesh R. Mote, Shahaji R. Gaikwad, Kishor V. Khopade, Rajesh G. Gonnade, Samir H. Chikkali|2021|Dalton Trans.|50|3717|doi:10.1039/D1DT00093D
DOI: 10.5517/ccdc.csd.cc24zn71
title: CCDC 1995663: Experimental Crystal Structure Determination

description: Related Article: Jianfeng Zhang, Marco Wenzel, Kathleen Schnaars, Felix Hennersdorf, Kai Schwedtmann, Juliane März, André Rossberg, Peter Kaden, Florian Kraus, Thorsten Stumpf, Jan J. Weigand|2021|Dalton Trans.|50|3550|doi:10.1039/D1DT00365H
DOI: 10.5517/ccdc.csd.cc251k3x
title: CCDC 1997488: Experimental Crystal Structure Determination

description: Related Article: Jianfeng Zhang, Marco Wenzel, Kathleen Schnaars, Felix Hennersdorf, Kai Schwedtmann, Juliane März, André Rossberg, Peter Kaden, Florian Kraus, Thorsten Stumpf, Jan J. Weigand|2021|Dalton Trans.|50|3550|doi:10.1039/D1DT00365H
DOI: 10.17632/5dht7sn3gc.1
title: Data for: Alkali-assisted synthesis of gourd flesh derived tricolor F/N co-doped carbon dots for efficient degradation of organic dyes

description: All the data files related to the content of the paper are contained in this ZIP file.
DOI: 10.6084/m9.figshare.11778189
title: Quantum SVM via SOCP experiment logs

description: The dataset contains the experiment logs for the "Quantum algorithms for Second-Order Cone Programming and Support Vector Machines" paper. Every row represents the details of solving a single random SVM instance. The meanings of the columns are the following:n, m: dimension and number of training examplescorruption: the label corruption probability p from the paperacc_train, acc_test: classification accuracies achieved by the simulated quantum algorithmacc_socp_train, acc_socp_test: idem, but for a SVM trained by solving the SOCP reduction with ECOSsocp_train_time: training time for ECOS, in secondslibsvm_train_time: training time for LIBSVM with a linear kernel<br>matrix_size: size of the Newton systemmu: the final duality gaplambda_min_x, lambda_min_s: final distances from the cone boundarycp_dist: final distance from the central pathkappa: final condition number of the Newton matrixfrob: the zeta parameter, ||A||_F/||A||_2 for the Newton matrixdifficulty: the data dependent factor in the complexity expression (arbitrary units)<br>complexity: the product of all quantities in the complexity expression (arbitrary units)exit_reason: useful for debugging, indicates which convergence criterion was triggered<br><br>
DOI: 10.6084/m9.figshare.11778189.v1
title: Quantum SVM via SOCP experiment logs

description: The dataset contains the experiment logs for the "Quantum algorithms for Second-Order Cone Programming and Support Vector Machines" paper. Every row represents the details of solving a single random SVM instance. The meanings of the columns are the following:n, m: dimension and number of training examplescorruption: the label corruption probability p from the paperacc_train, acc_test: classification accuracies achieved by the simulated quantum algorithmacc_socp_train, acc_socp_test: idem, but for a SVM trained by solving the SOCP reduction with ECOSsocp_train_time: training time for ECOS, in secondslibsvm_train_time: training time for LIBSVM with a linear kernel<br>matrix_size: size of the Newton systemmu: the final duality gaplambda_min_x, lambda_min_s: final distances from the cone boundarycp_dist: final distance from the central pathkappa: final condition number of the Newton matrixfrob: the zeta parameter, ||A||_F/||A||_2 for the Newton matrixdifficulty: the data dependent factor in the complexity expression (arbitrary units)<br>complexity: the product of all quantities in the complexity expression (arbitrary units)exit_reason: useful for debugging, indicates which convergence criterion was triggered<br><br>
DOI: 10.6084/m9.figshare.14224271.v1
title: 19505824.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14224271
title: 19505824.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.5281/zenodo.4607448
title: Data set related to the article "Circulating BPIFB4 Levels Associate With and Influence the Abundance of Reparative Monocytes and Macrophages in Long Living Individuals"

description: This record contains raw data related to the article "Circulating BPIFB4 Levels Associate With and Influence the Abundance of Reparative Monocytes and Macrophages in Long Living Individuals" <strong>Abstract</strong> Long-Living Individuals (LLIs) delay aging and are less prone to chronic inflammatory reactions. Whether a distinct monocytes and macrophages repertoire is involved in such a characteristic remains unknown. Previous studies from our group have shown high levels of the host defense BPI Fold Containing Family B Member 4 (BPIFB4) protein in the peripheral blood of LLIs. Moreover, a polymorphic variant of the <em>BPIFB4</em>gene associated with exceptional longevity (<em>LAV-BPIFB4</em>) confers protection from cardiovascular diseases underpinned by low-grade chronic inflammation, such as atherosclerosis. We hypothesize that BPIFB4 may influence monocytes pool and macrophages skewing, shifting the balance toward an anti-inflammatory phenotype. We profiled circulating monocytes in 52 LLIs (median-age 97) and 52 healthy volunteers (median-age 55) using flow cytometry. If the frequency of total monocyte did not change, the intermediate CD14++CD16+ monocytes counts were lower in LLIs compared to control adults. Conversely, non-classical CD14+CD16++ monocyte counts, which are M2 macrophage precursors with an immunomodulatory function, were found significantly associated with the LLIs' state. In a differentiation assay, supplementation of the LLIs' plasma enhanced the capacity of monocytes, either from LLIs or controls, to acquire a paracrine M2 phenotype. A neutralizing antibody against the phosphorylation site (ser 75) of BPIFB4 blunted the M2 skewing effect of the LLIs' plasma. These data indicate that LLIs carry a peculiar anti-inflammatory myeloid profile, which is associated with and possibly sustained by high circulating levels of BPIFB4. Supplementation of recombinant BPIFB4 may represent a novel means to attenuate inflammation-related conditions typical of unhealthy aging.
DOI: 10.5281/zenodo.4607447
title: Data set related to the article "Circulating BPIFB4 Levels Associate With and Influence the Abundance of Reparative Monocytes and Macrophages in Long Living Individuals"

description: This record contains raw data related to the article "Circulating BPIFB4 Levels Associate With and Influence the Abundance of Reparative Monocytes and Macrophages in Long Living Individuals" <strong>Abstract</strong> Long-Living Individuals (LLIs) delay aging and are less prone to chronic inflammatory reactions. Whether a distinct monocytes and macrophages repertoire is involved in such a characteristic remains unknown. Previous studies from our group have shown high levels of the host defense BPI Fold Containing Family B Member 4 (BPIFB4) protein in the peripheral blood of LLIs. Moreover, a polymorphic variant of the <em>BPIFB4</em>gene associated with exceptional longevity (<em>LAV-BPIFB4</em>) confers protection from cardiovascular diseases underpinned by low-grade chronic inflammation, such as atherosclerosis. We hypothesize that BPIFB4 may influence monocytes pool and macrophages skewing, shifting the balance toward an anti-inflammatory phenotype. We profiled circulating monocytes in 52 LLIs (median-age 97) and 52 healthy volunteers (median-age 55) using flow cytometry. If the frequency of total monocyte did not change, the intermediate CD14++CD16+ monocytes counts were lower in LLIs compared to control adults. Conversely, non-classical CD14+CD16++ monocyte counts, which are M2 macrophage precursors with an immunomodulatory function, were found significantly associated with the LLIs' state. In a differentiation assay, supplementation of the LLIs' plasma enhanced the capacity of monocytes, either from LLIs or controls, to acquire a paracrine M2 phenotype. A neutralizing antibody against the phosphorylation site (ser 75) of BPIFB4 blunted the M2 skewing effect of the LLIs' plasma. These data indicate that LLIs carry a peculiar anti-inflammatory myeloid profile, which is associated with and possibly sustained by high circulating levels of BPIFB4. Supplementation of recombinant BPIFB4 may represent a novel means to attenuate inflammation-related conditions typical of unhealthy aging.
DOI: 10.17903/fk2/ljycsa
title: The Internet in Cyprus 2010 (Greek-Cypriot and Turkish-Cypriot Community)

description: This is the second “Cyprus World Internet Project” survey. It was conducted in May-June 2010. Information was gathered via personal interview with a sample of 1000 Greek-Cypriots and 600 Turkish-Cypriots. The data collected is therefore more significantly representative of the Cypriot population than the first survey conducted in 2008 which considered only the views of the Greek-Cypriot community.
DOI: 10.25345/c5pb86
title: MassIVE MSV000087057 - Quantitative proteomic analysis of extracellular vesicle subgroups isolated by an optimized method combining polymer-based precipitation and size exclusion chromatography
title: The molecular characterization of extracellular vesicles (EVs) has revealed a great heterogeneity in their composition at a cellular and tissue level. Current isolation methods fail to efficiently separate EV subtypes for proteomic and functional analysis. We developed a reproducible and scalable isolation workflow to increase the yield and purity of EV preparations. Through a combination of polymer-based precipitation and size exclusion chromatography (Pre-SEC), we analyzed two subsets of EVs based on their CD9, CD63 and CD81 content and elution time. A quantitative proteomic analysis of MDA-MB-468-derived EVs revealed a set of differentially expressed proteins between early- and late-eluting EV subgroups that provided an insight of their subcellular origin. Through a systems biology approach, we found significant interactions among proteins contained in the EVs which suggest the existence of functional clusters related to specific biological processes. The isolation workflow allows the study of EV subtypes within a single cell type and contributes to standardizing the EV isolation for functional studies.
DOI: 10.21227/5m39-4x38
title: Decomposition-Residuals Neural Networks: Hybrid system identification applied to electricity forecasting

description: COVID-19 causes issues in energy demand profile forecasting. Day-ahead energy forecasting systems struggle to provide accurate demand predictions. Decomposition-Residuals Deep Neural Networks (DR-DNN) is a two-layer hybrid architecture with: a decomposition and a nonlinear layer. Based on statistical tests, the decomposition layer applies robust signal decomposition and low-order system identification of input data streams into: trend, seasonal and residuals signals. Utilizing calendar information, temporal signals are added: sinusoidal day/night cycles, weekend/weekday, etc. The nonlinear layer can learn unknown nonlinear patterns using typical DNN models like Recurrent Neural Networks (RNN) and Convolutional Neural Networks (CNN). DR-DNN outperformed baseline, linear, and plain DNN models on next-day electricity forecasts within the COVID-19 era (September 2020-January 2021).
DOI: 10.6084/m9.figshare.14224328
title: 19507019.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14224328.v1
title: 19507019.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14224334.v1
title: 19507033.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14224334
title: 19507033.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.25387/g3.14215817
title: Supplemental Material for Cao et al., 2021

description: Figures include Figure 1-5. Figure 1 showed that <i>Brpf1</i> knockdown led to a mild reduced trend on the differentiation of MGE-derived GABAergic interneurons into PV<sup>+</sup> interneurons. Figure 2 showed that <i>Brpf1</i> knockdown had no significant effect on the dendritic morphology of MGE-derived GABAergic interneurons. Figure 3 showed that <i>Brpf1</i> deficiency led to attenuated inhibitory neurotransmission of MGE-derived GABAergic interneurons. Figure 4 showed that <i>Brpf1</i> deficiency had no effect on the neuronal migration of MGE-derived GABAergic interneurons <i>in vivo</i>. Figure 5 showed that <i>Brpf1</i> deficiency led to decreased <i>Map2k7</i> expression in MGE-derived GABAergic interneurons revealed by mRNA-Seq. Supplementary materials include Reagent Table and Table S1. Table S1 contains DESeq2 output and the FPKM values of genes. All reagents and software were listed in the Reagent Table.
DOI: 10.25387/g3.14215817.v1
title: Supplemental Material for Cao et al., 2021

description: Figures include Figure 1-5. Figure 1 showed that <i>Brpf1</i> knockdown led to a mild reduced trend on the differentiation of MGE-derived GABAergic interneurons into PV<sup>+</sup> interneurons. Figure 2 showed that <i>Brpf1</i> knockdown had no significant effect on the dendritic morphology of MGE-derived GABAergic interneurons. Figure 3 showed that <i>Brpf1</i> deficiency led to attenuated inhibitory neurotransmission of MGE-derived GABAergic interneurons. Figure 4 showed that <i>Brpf1</i> deficiency had no effect on the neuronal migration of MGE-derived GABAergic interneurons <i>in vivo</i>. Figure 5 showed that <i>Brpf1</i> deficiency led to decreased <i>Map2k7</i> expression in MGE-derived GABAergic interneurons revealed by mRNA-Seq. Supplementary materials include Reagent Table and Table S1. Table S1 contains DESeq2 output and the FPKM values of genes. All reagents and software were listed in the Reagent Table.
DOI: 10.6084/m9.figshare.14224412
title: seqkit-all.stats

description: Output of seqkit stats for all DNA sequence files from <br>Gallardo-Escárate, C. Additional annotation files_GenSAS. figshare https://doi.org/10.6084/m9.figshare.12847493 (2020).<br>
DOI: 10.6084/m9.figshare.14224400
title: BUSCO GenSAS output

description: BUSCO output run in GenSAS on the GCA_013387185.1 assembly.
DOI: 10.6084/m9.figshare.14224400.v1
title: BUSCO GenSAS output

description: BUSCO output run in GenSAS on the GCA_013387185.1 assembly.
DOI: 10.6084/m9.figshare.14224430
title: Model Parameters

description: Parameters for models.
DOI: 10.6084/m9.figshare.14224430.v1
title: Model Parameters

description: Parameters for models.
DOI: 10.6084/m9.figshare.14224322
title: croger-additional-files-with-sequence-stats.tar.gz

description: Additional files as found inGallardo-Escárate, C. Additional annotation files_GenSAS. <i>figshare</i> https://doi.org/10.6084/m9.figshare.12847493 (2020).<br><br>With additional statistics computed by seqkit and biopieces. Files ending in fna or faa are original sequence files, files ending in .stats contain summary statistics for the respective sequence files, files ending in .o contain sequence counts for each file.<br>
DOI: 10.6084/m9.figshare.14224322.v1
title: croger-additional-files-with-sequence-stats.tar.gz

description: Additional files as found inGallardo-Escárate, C. Additional annotation files_GenSAS. <i>figshare</i> https://doi.org/10.6084/m9.figshare.12847493 (2020).<br><br>With additional statistics computed by seqkit and biopieces. Files ending in fna or faa are original sequence files, files ending in .stats contain summary statistics for the respective sequence files, files ending in .o contain sequence counts for each file.<br>
DOI: 10.6084/m9.figshare.14224295
title: BUSCO-V3.0.2-results.tar.gz

description: Contains unfiltered results from BUSCO V3.0.2 analyses<br>BUSCO was run with the following datasets:folders ending in _euk: eukaryota_odb9 _met: metazoa_odb9_art: arthropoda_odb9<br>folders containing _cleaned_ contain results using the cleaned assembly file as downloaded from GenSAS after preprocessing.
DOI: 10.6084/m9.figshare.14224256
title: BUSCO-V5.0.0-results.tar.gz

description: Unfiltered output from the BUSCO V5.0.0 analyses on the Caligus rogercresseyi assembly: GCA_013387185.1 and on Additional files https://doi.org/10.6084/m9.figshare.12847493 <br>See files <br>folders ending in ... contain results for BUSCO's: _art: Arthropoda_odb10 _met: Metazoa_odb10_euk: Eukaryota_odb10<br>Folders with names protset or cdnaset contain results run on the predicted proteins and cDNAs from Additional files.
DOI: 10.34740/kaggle/dsv/2030315
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.15131/shef.data.5632777
title: Data for "Changes in cell mechanical properties at different stages of bone cell differentiation"

description: Pre-processed data obtained by AFM nano-indentation of MC3T3 pre-osteoblast cells, MLO-A5 pre-osteocyte cells, IDG-SW3 osteoblast/osteocyte cells. The data pre-processing consisted in contact point fitting, tip-sample separation correction and drift correction of raw data, all performed in MATLAB (v2016a).<br><br>The experimental methodology and data processing are described in the author's thesis (Chapter 5).<br>Methods<br>* AFM cantilever preparation<br>Tip-less cantilevers (Windsor Scientific) with nominal spring constant of 0.2 N/m were customised by glueing a silica bead (D = 6 μm, Bangs Laboratories) at the<br>tip extremity. <br><br>* AFM set-up<br>A NanoWizard 3 atomic force microscope (JPK Instruments AG) coupled to an Eclipse Ti-S optical inverted microscope (Nikon Instruments) was used for all the experiments.<br>The cells were washed in phosphate buffer solution (PBS) and fresh medium was added. Samples were positioned on the heated sample holder to allow for testing at 37◦C. Single cells were located through the coupled optical microscope and images of cell shape were recorded for morphological analysis.<br>The cantilever was centred over the location of interest and a grid of 5 points spaced 3 μm within each other was set. Force spectroscopy measurements were obtained on the 5-point grid for 3 times to collect a total of 15 data on each location. The relative set point and the approach velocity were set to 10 nN and 4 μm/s respectively. <br>