cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4702600
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.15468/kyy89a
title: Taxonomic revision of the Calotheca parvula species group from southern Africa, with descriptions of three new species (Coleoptera, Chrysomelidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article D'Alessandro, Paola, Iannella, Mattia, Grobbelaar, Elizabeth, Biondi, Maurizio (2021): Taxonomic revision of the Calotheca parvula species group from southern Africa, with descriptions of three new species (Coleoptera, Chrysomelidae). African Invertebrates 62 (1): 315-337, DOI: http://dx.doi.org/10.3897/AfrInvertebr.62.62426, URL: http://dx.doi.org/10.3897/AfrInvertebr.62.62426
DOI: 10.15468/zzvnke
title: A survey of Hebeloma (Hymenogastraceae) in Greenland

description: This dataset contains the digitized treatments in Plazi based on the original journal article Eberhardt, Ursula, Beker, Henry J., Borgen, Torbjorn, Knudsen, Henning, Schuetz, Nicole, Elborne, Steen A. (2021): A survey of Hebeloma (Hymenogastraceae) in Greenland. MycoKeys 79: 17-118, DOI: http://dx.doi.org/10.3897/mycokeys.79.63363, URL: http://dx.doi.org/10.3897/mycokeys.79.63363
DOI: 10.15468/pu6xck
title: Anthyllis apennina (Fabaceae), a new species from central Apennine (Italy)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Conti, Fabio, Bartolucci, Fabrizio (2021): Anthyllis apennina (Fabaceae), a new species from central Apennine (Italy). PhytoKeys 176: 111-129, DOI: http://dx.doi.org/10.3897/phytokeys.176.62774, URL: http://dx.doi.org/10.3897/phytokeys.176.62774
DOI: 10.15468/84e2sn
title: Collembola from Hundidero-Gato Cave in Southern Spain, with the description of a new species of Entomobrya Rondani, 1861 (Collembola, Entomobryidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Arbea 1, Javier I., Lopez 2, Virginia Garcia, Soria 2, Francisco Javier, Abellan 2, Pedro (2021): Collembola from Hundidero-Gato Cave in Southern Spain, with the description of a new species of Entomobrya Rondani, 1861 (Collembola, Entomobryidae). Subterranean Biology 38: 77-90, DOI: http://dx.doi.org/10.3897/subtbiol.38.66254, URL: http://dx.doi.org/10.3897/subtbiol.38.66254
DOI: 10.5281/zenodo.4702398
title: Functional binding dynamics relevant to the evolution of zoonotic spillovers in endemic and emergent Betacoronavirus strains

description: data for bioRxiv pre-print by Rynkiewicz et al. 2021 abstract - Comparative functional analysis of the dynamic interactions between various <em>Betacoronavirus</em> mutant strains and broadly utilized target proteins such as ACE2 and CD26, is crucial for a more complete understanding of zoonotic spillovers of viruses that cause diseases such as COVID-19. Here, we employ machine learning to replicated sets of nanosecond scale GPU accelerated molecular dynamics simulations to statistically compare and classify atom motions of these target proteins in both the presence and absence of different endemic and emergent strains of the viral receptor binding domain (RBD) of the S spike glycoprotein. Machine learning was used to identify functional binding dynamics that are evolutionarily conserved from bat CoV-HKU4 to human endemic/emergent strains. Conserved dynamics regions of ACE2 involve both the N-terminal helices, as well as a region of more transient dynamics encompassing K353, Q325 and a novel motif AAQPFLL 386-92 that appears to coordinate their dynamic interactions with the viral RBD at N501. We also demonstrate that the functional evolution of <em>Betacoronavirus</em> zoonotic spillovers involving ACE2 interaction dynamics are likely pre-adapted from two precise and stable binding sites involving the viral bat progenitor strain’s interaction with CD26 at SAMLI 291-5 and SS 333-334. Our analyses further indicate that the human endemic strains hCoV-HKU1 and hCoV-OC43 have evolved more stable N-terminal helix interactions through enhancement of an interfacing loop region on the viral RBD, whereas the highly transmissible SARS-CoV-2 variants (B.1.1.7, B.1.351 and P.1) have evolved more stable viral binding via more focused interactions between the viral N501 and ACE2 K353 alone.
description: This is data associated with a preprint on bioRxiv by the same title.
DOI: 10.5281/zenodo.4022862
title: Functional binding dynamics relevant to the evolution of zoonotic spillovers in endemic and emergent Betacoronavirus strains

description: data for bioRxiv pre-print by Rynkiewicz et al. 2021 abstract - Comparative functional analysis of the dynamic interactions between various <em>Betacoronavirus</em> mutant strains and broadly utilized target proteins such as ACE2 and CD26, is crucial for a more complete understanding of zoonotic spillovers of viruses that cause diseases such as COVID-19. Here, we employ machine learning to replicated sets of nanosecond scale GPU accelerated molecular dynamics simulations to statistically compare and classify atom motions of these target proteins in both the presence and absence of different endemic and emergent strains of the viral receptor binding domain (RBD) of the S spike glycoprotein. Machine learning was used to identify functional binding dynamics that are evolutionarily conserved from bat CoV-HKU4 to human endemic/emergent strains. Conserved dynamics regions of ACE2 involve both the N-terminal helices, as well as a region of more transient dynamics encompassing K353, Q325 and a novel motif AAQPFLL 386-92 that appears to coordinate their dynamic interactions with the viral RBD at N501. We also demonstrate that the functional evolution of <em>Betacoronavirus</em> zoonotic spillovers involving ACE2 interaction dynamics are likely pre-adapted from two precise and stable binding sites involving the viral bat progenitor strain’s interaction with CD26 at SAMLI 291-5 and SS 333-334. Our analyses further indicate that the human endemic strains hCoV-HKU1 and hCoV-OC43 have evolved more stable N-terminal helix interactions through enhancement of an interfacing loop region on the viral RBD, whereas the highly transmissible SARS-CoV-2 variants (B.1.1.7, B.1.351 and P.1) have evolved more stable viral binding via more focused interactions between the viral N501 and ACE2 K353 alone.
description: This is data associated with a preprint on bioRxiv by the same title.
DOI: 10.18112/openneuro.ds003500.v1.2.0
title: Response inhibition and selective attention in ADHD children as well as in typical children and adults
DOI: 10.6084/m9.figshare.14446386
title: Mycobiota associated with vascular wilt of poplar

description: In 2017, the 560-ha area of hybrid poplar plantation in northern Poland showed symptoms of tree decline. Leaves appeared smaller, yellow-brown, and were shed prematurely. Twigs and smaller branches died without distinct cankers. Trunks decayed from the base. Phloem and xylem showed brown necrosis. Ten per cent of trees died 1-2 months after the first appearance of symptoms. None of these symptoms was typical for known poplar diseases.<b> </b>Mycobiota was analysed with Illumina sequencing. A total of 69 467 and 70 218 OTUs were obtained from the soil and wood. Blastocladiomycota and Chytridiomycota occurred only in soil, with very low frequencies (0.005% and 0.008%). Two taxa of Glomeromycota with frequency 0.001% occurred in wood. In soil and wood, frequencies of Zygomycota were 3.631% and 0.006%, of<i> </i>Ascomycota 45.299% and 68.697%, and of Basidiomycota 4.119% and 2.076%. At least 400 taxa of fungi were present. Identifiable Zygomycota, Ascomycota, and Basidiomycota were represented by at least 18, 263 and 81 taxa, respectively. Many fungi were common to soil and wood, but 160 taxa occurred only in soil and 73 only in wood. Root pathogens included species of Oomycota. Vascular and parenchymal pathogens included species of Ascomycota and of Basidiomycota.<b> </b>The initial endophytic character of fungi is emphasized. Soil and possibly planting material may be the sources of pathogen inoculum, and climate warming is likely to be a predisposing factor<b>.</b> Water deficit may increase tree susceptibility
DOI: 10.5281/zenodo.4702789
title: Data Sets for "Moment tensors of ring-faulting at active volcanoes: Insights into vertical-CLVD earthquakes at the Sierra Negra caldera, Galápagos Islands" (Sandanbata et al., submitted to JGR - Solid Earth)

description: We conduct moment tensor (MT) inversion for the 2005 earthquake at the Sierra Negra caldera, the Galapagos Islands. For the inversion, we assumed different centroid locations in 3D space, i.e., on the x–y (longitude-latitude) plane at a depth of 2.5 km below the solid surface, and the x–z (longitude–depth) plane along a latitude of 0.83°S across the Sierra Negra caldera. Data Sets S1 and S2 contain MT solutions obtained by the MT inversion with a constraint of zero trace; those solutions are used for Figure 7 in "Main Text". Data Sets S3 and S4 contain MT solutions obtained by the MT inversion with constrains of zero trace and zero <em>DS</em> component (\(M_{r\theta}=M_{r\phi}=0\)); those are are used for Figure S1 in "Supporting Information". For the detailed methodology and data, see Section 3 in "Main Text" and Text S1 in "Supporting Information" of our manuscript.
description: Fixed typos in "README" file.
DOI: 10.5517/ccdc.csd.cc27rlj4
title: CCDC 2078256: Experimental Crystal Structure Determination

description: Related Article: Luca Andreo, Emanuele Priola, Eliano Diana|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rsb4
title: CCDC 2078436: Experimental Crystal Structure Determination

description: Related Article: Yi Han, Chunyan Chi|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rx64
title: CCDC 2078556: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, Yu.N. Bubnov|2021|CSD Communication|||
DOI: 10.25919/5f63ce026960a
title: Reduced representation bisulfite sequencing of caudal fin Zebrafish

description: Reduced representation bisulfite sequencing (RRBS) of caudal fin tissue from known age and sex of zebrafish (Danio rerio).
DOI: 10.6084/m9.figshare.14450460
title: Data to Land-use but not distance drives fungal beta diversity

description: The analyses come with three objects: <br> <br> Code S1 is an rMarkdown document that creates the Bayesian models, compares them with leave-one-out cross-validation, and assesses their fits using posterior prediction. <br> Code S2 is an rMarkdown document for the manuscript, including all of the plotting. <br> Data S1 is an R data file with three objects: leaf, roots, and soil, pertaining to the leaf, root, and soil fungal communities respectively. These contain as columns: <br> q0: the pairwise beta diversities for each plot for q = 0 <br> q1: the pairwise beta diversities for each plot for q = 1 <br> q2: the pairwise beta diversities for each plot for q = 2 <br> q3: the pairwise beta diversities for each plot for q = 3 <br> distance: the great-circle distance between subplots <br> Land: the land-use type (natural forest, planted forest, high-producing grasslands, low-producing grasslands, or perennial cropland) <br> Plots: The numeric plot name
DOI: 10.14457/cmu.the.2006.741
title: การประเมินผลโครงการแก้ไขปัญหาหนี้นอกระบบ ในอำเภอดอยสะเก็ด จังหวัดเชียงใหม่
DOI: 10.14457/cmu.the.2005.412
title: พฤติกรรมจริยธรรมของพยาบาล ตามการรับรู้ของผู้รับบริการแผนกผู้ป่วย ในโรงพยาบาลศรีเทพ จังหวัดเพชรบูรณ์
DOI: 10.14457/cmu.the.2006.742
title: ผลกระทบจากการลดลงของทรัพยากรประมง ชุมชนลุ่มน้ำสงคราม : กรณีศึกษาตำบลท่าบ่อสงคราม อำเภอศรีสงคราม จังหวัดนครพนม
DOI: 10.14457/cmu.the.2005.413
title: ความพึงพอใจของลูกค้า ต่อบริการของธนาคารไทยพาณิชย์ จำกัด [มหาชน]
DOI: 10.6084/m9.figshare.12400739.v1
title: Data without statistical processing

description: The dataset includes a list of species of chrysiphytic algae from different water bodies located north of 60 degrees N. A set of species was formed on the basis of analysis of data from 193 scientific publications. In addition, the data contains information on T water temperature, pH, conductivity in the sampling period and month of sampling.<br>
DOI: 10.14457/cmu.the.2006.743
title: ทัศนคติของผู้นำชุมชน ต่อผู้ติดเชื้อเอชไอวีและผู้ป่วยเอดส์ : กรณีศึกษาบ้านแพะเจริญ ตำบลนาทราย อำเภอลี้ จังหวัดลำพูน
DOI: 10.14457/cmu.the.2004.709
title: ความพึงพอใจของผู้ปฏิบัติงาน ต่อระบบการจัดการสิ่งแวดล้อม ISO 14001 ในโรงพยาบาลเชียงใหม่ราม 2 จังหวัดเชียงใหม่
DOI: 10.14457/cmu.the.2005.414
title: การประเมินโครงการกำจัดขยะมูลฝอยแบบครบวงจร : กรณีศึกษาเทศบาลตำบลเวียงฝาง อำเภอฝาง จังหวัดเชียงใหม่
DOI: 10.6084/m9.figshare.14411858
title: General Dental Practitioners' Perception on Team-based learning pedagogy for continuing dental education

description: This data set consists of feedback from a group of General Dental Practitioners who have attended a Team-based learning workshop on New Classification of Periodontal Disease 2017. Based on a 5-point Likert scale (1-strongly disagree to 5-strongly agree), they indicated their level of agreement on items related to the workshop and their leaning experience.
DOI: 10.5281/zenodo.3965447
title: ACMUS-MIR: An annotated data set of Andean Colombian music

description: The ACMUS-MIR data set is a selection of music taken from the Músicas Regionales Archive in Medellin, Colombia. The data set currently contains a total of 337 segments of annotated music. The data set was compiled to support the development of computational methods for three main tasks: 1) Recognition of simple and compound meters, 2) Instrumental format recognition, and 3) Scale detection. For this reason, the ACMUS-MIR data set currently comprises three independent sets (one for each task): the rhythm set, the instrumental format set, and the scale set. For more information about our project, please visit our website and github. For additional datasets from the ACMUS project, see: Sesquialtera in the Colombian bambuco: Perception and estimation of beat and meter
description: This work has been partially supported by the German Research Foundation (BR 1333/20-1, CA 2096/1-1).
DOI: 10.6084/m9.figshare.14450481.v1
title: Northwestern Pacific Diurnal Internal Tide

description: The dataset includes the data of the modelled K1 diurnal internal tide energy in the northwestern Pacific. The Regional Ocean Modelling System (ROMS) is used. The E_u* and E_v* variables represent the energy flux in the zonal and meridional directions, respectively. The lon* and lat* variables represent the longitude and latitude coordinate. The Diss indicates the depth-integrated dissipation rates. The ssh* variables represent baroclinic ssh field of line-souce model. The lon_ray* and lat_ray* indicate the ray-tracing patterns of the ray tracing model.Please feel free to contact me if you have any questions.
DOI: 10.6084/m9.figshare.14450487
title: Northwestern-Pacific-Diurnal-Internal-Tide

description: Northwestern Pacific Diurnal Internal Tide data
DOI: 10.6084/m9.figshare.14450487.v1
title: Northwestern-Pacific-Diurnal-Internal-Tide

description: Northwestern Pacific Diurnal Internal Tide data
DOI: 10.18112/openneuro.ds003620.v1.0.0
title: Runabout: A mobile EEG study of auditory oddball processing in laboratory and real-world conditions
DOI: 10.6084/m9.figshare.14450493
title: PRC/IS study abroad experiences in Taiwan

description: The current data set consists of information collected from PRC and other international students studying in Taiwan. A total of 1870 students participated in the study. Data collected are study abroad goals, prior study abroad experiences, the Short-term Study Abroad Situational Change Survey, a revised East Asian Acculturation Measure, Study Abroad Hassles, and overall study abroad satisfaction. Demographic data include student group, age, gender, duration of stay, and type of study abroad program. No identifying information is provided.
DOI: 10.6084/m9.figshare.14450493.v1
title: PRC/IS study abroad experiences in Taiwan

description: The current data set consists of information collected from PRC and other international students studying in Taiwan. A total of 1870 students participated in the study. Data collected are study abroad goals, prior study abroad experiences, the Short-term Study Abroad Situational Change Survey, a revised East Asian Acculturation Measure, Study Abroad Hassles, and overall study abroad satisfaction. Demographic data include student group, age, gender, duration of stay, and type of study abroad program. No identifying information is provided.
DOI: 10.5281/zenodo.4703017
title: original date

description: Raw data for each graph has been provided
DOI: 10.5281/zenodo.4703016
title: original date

description: Raw data for each graph has been provided
DOI: 10.25345/c55f8k
title: MassIVE MSV000087240 - roteome Changes Reveal the Protective Roles of Exogenous CA in Alleviating Cu Toxicity in Brassica napus L.
title: Citric acid (CA), as an organic chelator, plays a vital role in alleviating copper (Cu) stress-mediated oxidative damage, wherein a number of molecular mechanisms alter in plants.
DOI: 10.13139/ornlnccs/1773704
title: Sm-BFO STEM Datasets

description: Sm-doped BiFeO3 STEM datasets collected by Chris Nelson. Sample created at University of Maryland.
DOI: 10.13139/ornlnccs/1773705
title: Graphene STEM Standard Datasets

description: Graphene STEM datasets created by Ondrej Dyck. Datasets from July 2, 2018 C1 ArO graphene box1 lot 4670 (high res images, 100kV video graphene degradation).
DOI: 10.5517/ccdc.csd.cc271fnd
title: CSD 2056963: Experimental Crystal Structure Determination

description: Related Article: Dominik Spahr, Jannes Binck, Lkhamsuren Bayarjargal, Rita Luchitskaia, Wolfgang Morgenroth, Davide Comboni, Victor Milman, Björn Winkler|2021|Inorg.Chem.|60|5419|doi:10.1021/acs.inorgchem.1c00159
DOI: 10.6084/m9.figshare.14450593.v1
title: Additional file 2 of Lack of the peroxiredoxin 6 gene causes impaired spatial memory and abnormal synaptic plasticity

description: Additional file 2: The list of specific primers for genotyping (Table S1). The starting point for each trial during visible platform test (Table S2). The start positions for each day during hidden platform training trials (Table S3). The details of antibodies and vector used in this study (Table S4). And the sample sizes of the animals for each experiment (Table S5).
DOI: 10.6084/m9.figshare.14450593
title: Additional file 2 of Lack of the peroxiredoxin 6 gene causes impaired spatial memory and abnormal synaptic plasticity

description: Additional file 2: The list of specific primers for genotyping (Table S1). The starting point for each trial during visible platform test (Table S2). The start positions for each day during hidden platform training trials (Table S3). The details of antibodies and vector used in this study (Table S4). And the sample sizes of the animals for each experiment (Table S5).
DOI: 10.6084/m9.figshare.14450598
title: Additional file 2 of Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources

description: Additional file 2: Additional Supplemental File. This file contains additional supplementary information that is not directly relevant to the conclusions drawn in the paper, but should be interesting for the readers to look at.
DOI: 10.25919/s019-x425
title: Parkes observations for project PX501 semester 2020APRS_12

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX500) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first (PX500) will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time (relating to this proposal) will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.6084/m9.figshare.14450598.v1
title: Additional file 2 of Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources

description: Additional file 2: Additional Supplemental File. This file contains additional supplementary information that is not directly relevant to the conclusions drawn in the paper, but should be interesting for the readers to look at.
DOI: 10.6084/m9.figshare.14450601
title: Additional file 3 of Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources

description: Additional file 3: Supplementary Table S1. Encode accessions for the TF ChIP-Seq files used in the paper.
DOI: 10.6084/m9.figshare.14450601.v1
title: Additional file 3 of Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources

description: Additional file 3: Supplementary Table S1. Encode accessions for the TF ChIP-Seq files used in the paper.
DOI: 10.6084/m9.figshare.14450604
title: Additional file 4 of Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources

description: Additional file 4: Supplementary Table S3. Prediction results from fitting the ENET models using different input features.
DOI: 10.6084/m9.figshare.14450604.v1
title: Additional file 4 of Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources

description: Additional file 4: Supplementary Table S3. Prediction results from fitting the ENET models using different input features.
DOI: 10.6084/m9.figshare.14450607
title: Additional file 5 of Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources

description: Additional file 5: Supplementary Table S4. Results corresponding to TF effect estimates and the GO enrichment analysis based on these effects.
DOI: 10.6084/m9.figshare.14450607.v1
title: Additional file 5 of Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources

description: Additional file 5: Supplementary Table S4. Results corresponding to TF effect estimates and the GO enrichment analysis based on these effects.
DOI: 10.6084/m9.figshare.14450610
title: Additional file 6 of Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources

description: Additional file 6: Supplementary Table S5. Results from comparing the TF effect estimates obtained from the TEPIC GRN and the TEPIC models for GM12878 and K562 cell lines.
DOI: 10.6084/m9.figshare.14450610.v1
title: Additional file 6 of Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources

description: Additional file 6: Supplementary Table S5. Results from comparing the TF effect estimates obtained from the TEPIC GRN and the TEPIC models for GM12878 and K562 cell lines.
DOI: 10.6084/m9.figshare.14450644
title: Additional file 1 of PTEN loss correlates with T cell exclusion across human cancers

description: Additional file 1: Supplementary Table 1. Summary of the basic information of 21 solid tumors. Supplementary Table 2. Detailed information of Chen et al. cohort. Supplementary Table 3. Detailed information of Riaz et al. cohort
DOI: 10.6084/m9.figshare.14450644.v1
title: Additional file 1 of PTEN loss correlates with T cell exclusion across human cancers

description: Additional file 1: Supplementary Table 1. Summary of the basic information of 21 solid tumors. Supplementary Table 2. Detailed information of Chen et al. cohort. Supplementary Table 3. Detailed information of Riaz et al. cohort