cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25395871.v2
title: Cenozoic history of the tropical marine biodiversity hotspot

description: This zipped file contains:<b>(1) Census data:</b> Cenozoic fossil ostracod census dataset from 216 samples across the IAA region, totalling 47,727 specimens for 874 morphospecies (including 94 species records where at least part of a genus could not be identified to species level and were treated as one species record each in the analyses);<b>(2) Dataset:</b> it includes the original dataset for the IAA ostracod with the fossil occurrences (species assignation and stratigraphic ages);<b>(3) Commands:</b> it includes a command list of the Bayesian analyses performed on the ostracod datasets using PyRate;<b>(4) fixShift:</b> it includes two text files to set up the time intervals used in the BDCS model for constraining the periods in which rates are estimated in PyRate;<b>(5) BDCS:</b> it includes the folders for the different birth-death with constrained shifts (BDCS) models in PyRate including the outputs and plots of results;<b>(6) MBD:</b> it includes the folders for the different multivariate birth-death (MBD) models in PyRate, performed with the files including the times of speciation and extinction (<i>TsTe</i>) for the IAA ostracods and the outputs of the analyses.
DOI: 10.6084/m9.figshare.21333069.v1
title: Supplementary Material for: Efficacy of individualized homeopathic medicines in treatment of cervical spondylosis: Double-blind, randomized, placebo-controlled trial

description: Introduction: Cervical spondylosis (CS) is a degenerative condition of the cervical spine, with approximately 80-90% of people suffering from disc degeneration by the age of 50 years. This trial attempts at evaluating the efficacy of individualized homeopathic medicines (IHMs) against placebos in the treatment of CS. Methods: A 3-months, double-blind, randomized, placebo-controlled trial was conducted at the Organon of Medicine outpatient department of the National Institute of Homoeopathy, India. Patients were randomized to receive either IHMs (n=70) or identical-looking placebos (n=70) in the mutual context of concomitant conservative and standard physiotherapeutic care. Primary outcome measures were 0-10 Numeric Rating Scales (NRSs) for pain, stiffness, numbness, tingling, weakness, and vertigo, and the secondary outcome was Neck Disability Index (NDI); measured at baseline and every month, until 3 months. The intention-to-treat sample was analyzed to detect group differences and effect sizes. Results: Overall, improvements were clinically significant and higher in the IHMs group than placebo, but group differences were statistically non-significant with small effect sizes (all P&gt;0.05, two-way repeated measure analysis of variance). After 2 months of time points, improvements observed in the IHMs group were significantly higher than placebo on a few occasions (e.g., pain NRS: P&lt;0.001; stiffness NRS: P=0.024; weakness NRS: P=0.003). Sulfur (n=21; 15%) was the most frequently prescribed medication. No harm, unintended effects, or any serious adverse events were reported from either group. Conclusions: An encouraging, but non-significant direction of effect was elicited favoring IHMs against placebos in the treatment of CS. Trial registration: CTRI/2018/10/016156; UTN: U1111-1221-8064
DOI: 10.6084/m9.figshare.20745787.v1
title: Supplementary Material for: The Development and Validation of the First German Open Scale of Social Information Processing

description: <b><i>Introduction:</i></b> This study introduces the first German Open Scale of Social Information Processing (GOSSIP) and evaluates its psychometric properties. Even though social information processing (SIP) and its important role in developmental psychopathology is a rising field of interest, model-based standardized assessment tools are still scarce. <b><i>Methods:</i></b> GOSSIP was developed to assess SI processes in boys and girls aged eight to 21 years. First, 61 vignettes (combinations of pictures and short written descriptions of the situation depicted) were evaluated by an expert group and piloted with 48 healthy participants (aged 8–21). The best-rated vignettes were then implemented in a Web-based application. 191 participants completed GOSSIP. Of those, 76 answered additional questionnaires to assess their social skills and psychopathology. Internal consistencies for the emotional and cognitive GOSSIP scales were determined. Latent profile analysis (LPA) was used to identify subgroups of children and adolescents characterized by specific SIP profiles (i.e., patterns of emotional, cognitive, and behavioral responses to the GOSSIP). Furthermore, the external validity of the participants’ attribution tendencies in GOSSIP was evaluated in real life by smartphone-based Ecological Momentary Assessments (EMA). <b><i>Results:</i></b> The internal consistencies for the emotional and cognitive scales (angry, ashamed, physical aggression, pro-social response, revenge, and outcome expectancy) were good to excellent. The scales of hostile interpretation, relation aggression, sadness, and exclusion showed borderline/acceptable internal consistency. Correlation analysis confirmed convergent validity with self-reported social skills and external validity with ratings of aggressive and pro-social behaviors. The LPA revealed three profiles as the best fit of the data. The first group is named “<i>aggressors</i>,” <i>the second</i> “<i>social-emotional group</i>,” <i>and a third named</i> “<i>ashamed-internalizing group</i>.” However, no significant association was found between the attribution tendencies derived from GOSSIP and EMA data. <b><i>Discussion/Conclusion:</i></b> GOSSIP is the first model-based German Web-based assessment for several SIP mechanisms that showed overall adequate psychometric properties. GOSSIP can be used to classify individuals into SIP profiles that differ in terms of their cognitive and emotional response tendencies and therefore could contribute to the development of targeted interventions. Integrating assessments of emotional responses into GOSSIP revealed an important role of “shame” in SIP and the development of psychopathology. Furthermore, the lack of external validity between GOSSIP and EMA calls into question how attribution tendencies are best assessed in future studies.
DOI: 10.17632/mdyr6jbrv4
title: LINF_150013400

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/22nygcrxth
title: XPS Data fitting

description: The data concerns X-ray photoelectron spectroscopy fitting of the nitrogen effect on high entropy films obtained by magnetron sputtering.
DOI: 10.17632/jxx5d7n96r
title: Data for: Drinking through rosé-coloured glasses: Influence of wine colour on the perception of aroma and flavour in wine experts and novices

description: In this study, we assess how wine colour – specifically the pink hue of rosé wines – can influence both the perceived aroma and flavour in a large sample of wine novices and experts. Participants (N=168) tasted three wines – a white wine (W), a rosé wine (R), and the same white wine dyed to match the rosé (R´) – and freely selected three aroma and three flavour descriptors from a list. They also rated wine liking, flavour intensity, and description difficulty for each wine.
DOI: 10.6084/m9.figshare.5248489.v1
title: Two-dimensional Superconductivity from Dimerization of Atomically Ordered AuTe2Se4/3 Cubes

description: The emergent phenomena such as superconductivity
and topological phase transitions can be observed in strict two-dimensional (2D)
crystalline matters. Artificial interfaces and one atomic thickness layers are typical
2D materials of this kind. Although having 2D characters, most bulky layered
compounds, however, do not possess these striking properties. Here, we report
the 2D superconductivity in bulky AuTe<sub>2</sub>Se<sub>4/3, </sub>where the
reduction in dimensionality is achieved through inducing the elongated covalent
Te-Te bonds. The atomic-resolution images reveal that the Au, Te and Se are
atomically ordered in a cube, among which are Te-Te bonds of 3.18 Å and 3.28 Å.
The superconductivity at 2.85 K is discovered, which is unraveled to be the quasi-2D
nature owing to the Berezinsky–Kosterlitz–Thouless topological transition. The
nesting of nearly parallel Fermi sheets could give rise to strong
electron-phonon coupling. It is proposed to further depleting the thickness
could result in more topologically-related phenomena.
DOI: 10.17632/5p6jp3kjxk
title: জাতিগত বিভেদ ও সাংস্কৃতিক বৈষম্যের প্রতিচ্ছবি: তপন বন্দ্যোপাধ্যায়ের ‘খণ্ড বিখণ্ড’ উপন্যাসের আলোকে

description: ভূমিকা:
বাংলাদেশের ভৌগোলিক, সাংস্কৃতিক ও রাজনৈতিক পরিবেশে বসবাসরত দরিদ্র জনগণের স্বরূপ বোঝার প্রয়াসে তপন বন্দোপাধ্যায়ের ‘খন্ড বিখন্ড’ উপন্যাসটি একটি গুরুত্বপূর্ণ অবস্থান অধিকার করে। উপন্যাসটি নানা জাতি ও গোষ্ঠীর মধ্যকার সাংস্কৃতিক বিভেদ ও রাজনৈতিক নিগ্রহের চিত্র তুলে ধরে, যেখানে পরিচয় ও স্বীকৃতির জন্য সংগ্রাম করা মানুষের জীবনসংগ্রাম অন্বেষণ করা হয়েছে। লেখক ক্ষমতা ও রাজনীতির নৈমিত্তিক খেলার ফলে সাধারণ মানুষের সমস্যা নিয়ে একটি বিস্তৃত বার্তা প্রদান করেছেন, যা বিশেষ করে স্বাধীনতার পরবর্তী আন্দোলনের প্রেক্ষাপটে সমানভাবে প্রযোজ্য। এই প্রবন্ধে, আমরা উপন্যাসটির মাধ্যমে এই সংকটগুলোর বিশ্লেষণ করবো এবং সমাজের নানান স্তরে এর প্রতিফলন খুঁজে বের করার চেষ্টা করবো।

সূচক শব্দ: ভৌগোলিক বৈষম্য, জাতিগত সংকট, কামতাপুরী আন্দোলন, রাজনৈতিক ষড়যন্ত্র, সাংস্কৃতিক বৈচিত্র।

সার সংক্ষেপ :
বাংলাদেশের ভৌগোলিক, সাংস্কৃতিক এবং রাজনৈতিক পরিমণ্ডলে বসবাসরত দরিদ্র ও বঞ্চিত জনগোষ্ঠীকে প্রকৃতপক্ষে বাঙালি হিসেবে ধরা হয় না, যদিও তারা বাংলা ভাষায় কথা বলে। তাদের নিজেদের কাস্ট বা জাতিগত পরিচয়ের প্রতি গভীর আত্মমর্যাদাবোধ থাকায়, তাদের মধ্যে জাতিভেদের দৃঢ়তা বৃদ্ধি পেয়েছে। উপন্যাস ‘খণ্ড বিখণ্ড’ বিভিন্ন সম্প্রদায়ের মধ্যে বিদ্যমান পার্থক্যগুলোকে সংরক্ষণের একটি প্রতিক্রিয়া হিসেবে দাঁড়িয়েছে। উপন্যাসটি বাঙালি জাতির সঙ্গে দুপকা, ওরাও, সাঁওতাল, মুন্ডা, টোটো, মালপাহাড়ি, দেশিয়া, লোহার, গারো, রাজবংশী, নেপালি, মেচ, রাভা, ধীমালসহ বিভিন্ন কাস্টের সম্পর্ককে তুলে ধরেছে—লেখক দক্ষতার সঙ্গে এদের সম্পর্কে একটি চিত্র অঙ্কন করেছেন। তাদের ধর্ম, সংস্কৃতি, শিক্ষা, রাজনীতি, নৃত্য, পোশাকসহ বিভিন্ন সামাজিক আচার-অনুষ্ঠান নিয়ে বিস্তৃত আলোচনা হয়েছে। উপন্যাসটি একটি গভীর বার্তা দেয়: “ক্ষমতা ও রাজনীতির দ্বন্দ্ব সাধারণ মানুষের জন্য সমস্যার সৃষ্টি করে।
DOI: 10.17632/wk4gywntkv
title: GPR56 gene down-regulation in patients with Klinefelter Syndrome_Salemi et al._Minerva Endocrinol 2021

description: The etiology of azoospermia in patients with Klinefelter Syndrome (KS) is still unknown. The protein codified by the G protein-couple receptor 56 (GPR56) belongs to the adhesion family of G protein-coupled receptors (GPRs). Its mutations are involved in the pathogenesis of intellectual disability and, according to animal studies, infertility. As the expression of GPR56 in patients with KS has not been investigated so far, this study was undertaken with the
purpose of evaluating its expression in peripheral blood mononuclear cells (PBMCs) of patients with KS and normal controls.
This age-matched case-control study was performed in 10 patients with KS and 10 controls. Patients and controls underwent to blood sampling for next-generation sequencing (NGS) analysis, and differentially expressed mRNAs were identified using DESeq2 v.1.12. QRT-PCR was used to validate the results obtained by NGS analysis. Taq-Man Gene Expression Assay primers were used to carry out the real-time PCR analysis for GPR56. Our results show that GPR56 was down-regulated by -2081-fold (q-value <0.05) in PBMCs of patients with KS compared to controls. NGS data were confirmed by QRT-PCR.
Therefore, the possible contribution of the GPR56 gene down-regulation in the pathogenesis of spermatogenic failure in patients with KS is worthy to be further explored.
DOI: 10.6084/m9.figshare.21695084.v1
title: 韧性评价问卷数据.xlsx

description: questionnaire data
DOI: 10.17632/zwwy5vh4jx
title: Datas_Oral_Disease

description: INFLUENCE OF THE PRACTICE OF SPORTS, SLEEP DISORDERS AND HABITS ON PROBABLE SLEEP BRUXISM IN CHILDREN WITH MIXED DENTITION
DOI: 10.25446/oxford.21632654.v1
title: Round 1 - Test scores

description: The folder contains datasets of the test scores on Math and Literature of primary school grade 2 and lower secondary school grade 7 students in Vietnam in 2017.
DOI: 10.17632/kxzxyyhcpg
title: Data for: Increased Power Generation due to Exothermic Water Exsolution in CO2 Plume Geothermal (CPG) Power Plants

description: Dataset including the enthalpy model verification, and data for the figures/tables presented in the main text.
DOI: 10.25387/g3.14946033.v1
title: Supplemental Material for Shorinola et al., 2021

description: Supplemental Material
DOI: 10.6084/m9.figshare.28516139.v2
title: Preprocessed AnnData for TopoVelo

description: This .zip file contains seven spatial transcriptomic datasets reported in the paper "<i>Topological Velocity Inference from Spatial Transcriptomic Data Maps Cell Fate Transition in Space and Time</i>". All data are already preprocessed for running RNA velocity methods.
DOI: 10.5061/dryad.dd65d
title: Data from: Genetic redundancy strengthens the circadian clock leading to a narrow entrainment range
DOI: 10.17632/6czy9j4jns
title: Data for "Hydrate Sealing of Overpressured Gas: Delaying Methane Leakage"

description: This dataset contains the original calculated data for the manuscript titled "Hydrate Sealing of Overpressured Gas: Delaying Methane Leakage."

The dataset comprises four primary computational results, each corresponding to different methane flux and sediment permeability conditions: 
- High methane flux, high sediment permeability
- High methane flux, low sediment permeability
- Low methane flux, high sediment permeability
- Low methane flux, low sediment permeability

The respective computational results are stored in four text files: "F10-9K-14," "F10-9K-16," "F10-10K-14," and "F10-10K-16."
DOI: 10.17632/fpd6j5692y
title: Data for: Carbon Dots Derived from Human Hair for ppb Level Chloroform Sensing in Water

description: This zip file contains the coordinates used to describe the fractions of carbon dots and the THM molecules.
DOI: 10.17632/z4wrn88746
title: LINF_140017150

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.3564663.v1
title: Appendix B. Shifts in relative abundance for Patton 1994 data with adjustment factors at the site level used to account for use of electrofishing (Patton et al. 1998).

description: Shifts in relative abundance for Patton 1994 data with adjustment factors at the site level used to account for use of electrofishing (Patton et al. 1998).
DOI: 10.17632/xkhby9b3zv
title: Supplementary data: Surface-based Three-dimensional Cephalometry: An Objective Analysis of Cranio-Mandibular Morphology

description: Supplementary materials
DOI: 10.6084/m9.figshare.13213898.v1
title: nanopore_mk_figshare.tar.gz

description: BackgroundMicrobial keratitis is a leading cause of preventable blindness worldwide. Conventional sampling and culture techniques are time-consuming, with over 40% of cases being culture-negative. Nanopore sequencing technology is portable and capable of generating long sequencing reads in real-time. The aim of this study is to evaluate the potential of nanopore sequencing directly from clinical samples for the diagnosis of bacterial microbial keratitis.MethodsUsing full-length 16S rRNA amplicon sequences from a defined mock microbial community, we evaluated and benchmarked our bioinformatics analysis pipeline for taxonomic assignment on three different 16S rRNA databases (NCBI 16S RefSeq, RDP, and SILVA) with clustering at 97%, 99% and 100% similarities. Next, we optimised the sample collection using an ex vivo porcine model of microbial keratitis to compare DNA recovery rates of 12 different collection methods: 21­gauge needle, PTFE membrane (4mm and 6mm), Isohelix™ SK-2S, Sugi® Eyespear, Cotton, Rayon, Dryswab™, Hydraflock®, Albumin­coated, Purflock®, Purfoam and Polyester swabs. As a proof-of-concept study, we then used the sampling technique that provided the highest DNA recovery, along with the optimised bioinformatics pipeline, to prospectively collected samples from patients with suspected microbial keratitis. The resulting nanopore sequencing results were then compared to standard microbiology culture methods.ResultsWe found that applying alignment filtering to nanopore sequencing reads and aligning to the NCBI 16S RefSeq database at 100% similarity provided the most accurate bacterial taxa assignment. DNA concentration recovery rates differed significantly between the collection methods (p&lt;0.001), with the Sugi®Eyespear swab providing the highest mean rank of DNA concentration. Then, applying the optimised collection method and bioinformatics pipeline directly to samples from two patients with suspected microbial keratitis, sequencing results from Patient A were in agreement with culture results, whilst Patient B, with negative culture results and previous antibiotic use, showed agreement between nanopore and Illumina Miseq sequencing results.
DOI: 10.17632/fm9nm5y4zg
title: Data for: Acute Psychological Stress Alters Attentional Functions

description: Behavioural and ERP data.
DOI: 10.6084/m9.figshare.19754374.v1
title: TCMSP Herb Information-Ginkgo Folium-Export.xlsx

description: Bilobalide's pharmacology property
DOI: 10.6084/m9.figshare.26201549.v1
title: Increasing and fluctuating resource availability enhances invasional meltdown

description: Exotic plant invaders can promote others via direct or indirect facilitation, known as “invasional meltdown”. Increased soil nutrients can also promote invaders by increasing their competitive impacts, but how this might affect meltdown is unknown. In a mesocosm experiment, we evaluated how eight exotic plant species and eight Eurasian native species responded individually to increasing densities of the invasive plant <i>Conyza canadensis</i>, while varying the supply and fluctuations of nutrients. We found that increasing density of <i>C. canadensis</i> intensified competitive suppression of natives but intensified facilitation of other exotics. Higher and fluctuating nutrients exacerbated the competitive effects on natives and facilitative effects on exotics. Overall, these results show a pronounced advantage of exotics over native target species with increased relative density of <i>C. canadensis</i> under high nutrient availability and fluctuation. We integrate these results with the observation that exotic species commonly drive increases in soil resources to suggest the Resource-driven Invasional Meltdown and Inhibition of Natives hypothesis (RIMIN) in which biotic acceleration of resource availability promotes other exotic species over native species, leading to invasional meltdown.
DOI: 10.15468/dl.kjgvtw
title: Occurrence Download

description: A dataset containing 946 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Magelona johnstoni Fiege, Licher & Mackie, 2000"
 ]
}

 The dataset includes 946 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009184-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/2k8y-yw39
title: Flin Flon (MS-72-4) pollen surface sample dataset

description: Raw data for the Flin Flon (MS-72-4) pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17632/5ty2mh47mv
title: Data for: Clay mineral compositions in surface sediments of the Ganges-Brahmaputra-Meghna river system of Bengal Basin, Bangladesh

description: Clay minerals of the GBM river system
DOI: 10.6084/m9.figshare.13026530.v3
title: A dataset on wave propagation through vegetation with coexisting currents

description: This dataset was prepared to explore the effect of currents on wave dissipation by vegetation (hereafter referred as WDV) by conducting flume experiments with stiff plant mimics in combined wave-flow conditions. Two flume experiments with following and adverse currents were carried out respectively in a 40-m-long and 0.8-m-wide wave flume of the Fluid Mechanics Laboratory at Delft University of Technology and in a 26-m-long, 0.6-m-wide, 0.6-m-high wave flume in Sun Yat-sen University. Wave height data, velocity data and force data were obtained in these two flume experiments. Notably, drag coefficient data were calculated using calibration method and direct measurement method. The data sets presented here includes the wave data, velocity data, force data, velocity profile and drag coefficient.
DOI: 10.17632/y5x695378r
title: Mapping Study to Find Reusable Elements for the Design of Privacy Friendly Information Systems
DOI: 10.17632/kyx4fm5c82
title: Vitiligo & MetS
DOI: 10.17632/xzd99mhmdc
title: Data for: A New Method for Evaluating Collapsibility of Loess and Its Application

description: These are the data of Figs. 3, 5, 7, 8 and 10-12 in this paper.
DOI: 10.6084/m9.figshare.28715618.v1
title: TE.zip

description: <b>Repetitive elements</b><b> </b><b>predicted by</b><b> </b><b>RepeatMasker</b><b> </b><b>(version 4.1.7-p1)</b><b> for 25</b><b> </b><b>grassland plant species.</b><br><b>Species list:</b>Species_code Species_nameGerPra Geranium pratenseLeuVul Leucanthemum vulgare agg.TriFla Trisetum flavescensLotCor Lotus corniculatusCreBie Crepis biennisBelPer Bellis perennisDauCar Daucus carotaPruVul Prunella vulgarisTriPra Trifolium pratensePriVer Primula verisHolLan Holcus lanatusAloPra Alopecurus pratensisGalMol Galium mollugo agg.KnaArv Knautia arvensisMedVar Medicago x variaPlaLan Plantago lanceolataLuzCam Luzula campestrisVerCha Veronica chamaedrysArrEla Arrhenatherum elatiusTriDub Trifolium dubiumLatPra Lathyrus pratensisVicCra Vicia craccaRanAcr Ranunculus acrisPlaMed Plantago mediaAjuRep Ajuga reptans<br><b>Analyse pseudo code:</b>for i in {01..25}; do# the number corresponding to a particular speciesoutputDir="BMK230426-BJ202-01P000${i}"isoform="path/to/isoSeqData/BMK230426-BJ202-01P000${i}"path/to/RepeatMasker -pa 16 -lib Viridiplantae.fa -dir $outputDir $isoformdone;