cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5xp6v47k
title: MassIVE Reanalysis RMSV000000354.5440 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, C10orf55 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5sx64b49
title: MassIVE Reanalysis RMSV000000354.5435 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, DFNA5 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5p55dj1z
title: MassIVE Reanalysis RMSV000000354.5441 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, STXBP3 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5jh3d39f
title: MassIVE Reanalysis RMSV000000354.5436 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SIRT5 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5dr2p978
title: MassIVE Reanalysis RMSV000000354.5438 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TKTL2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5901zh3f
title: MassIVE Reanalysis RMSV000000354.5439 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, MAGEF1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c51g0hw3z
title: MassIVE Reanalysis RMSV000000354.5442 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ZNF581 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c55717p8k
title: MassIVE Reanalysis RMSV000000354.2210 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, WWOX [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5wp9t799
title: MassIVE Reanalysis RMSV000000354.5443 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, DDHD2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5n87314f
title: MassIVE Reanalysis RMSV000000354.5446 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SLC2A14 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5s17st79
title: MassIVE Reanalysis RMSV000000354.5444 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CXADR [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5hh6c71s
title: MassIVE Reanalysis RMSV000000354.5445 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, HN1L [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5cr5nd71
title: MassIVE Reanalysis RMSV000000354.5448 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, USP14 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5804xm2q
title: MassIVE Reanalysis RMSV000000354.5447 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, NR1H3 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c54746s7v
title: MassIVE Reanalysis RMSV000000354.5449 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PRPS2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25934/pr00007290.0
title: Available IPD datapackage for study 'A Phase 1b/2, With Phase 2 Randomized, Study Evaluating the Efficacy of Doxorubicin With or Without a Human Anti-PDGFRα Monoclonal Antibody (IMC-3G3) in the Treatment of Advanced Soft Tissue Sarcoma'

description: The main purpose of this study is to gather information about the use of an investigational drug called olaratumab with a drug for soft tissue sarcoma called doxorubicin.
DOI: 10.5281/zenodo.5947178
title: Propulsion of nano- and microcones by a traveling ultrasound wave: dependence on orientation and aspect ratio of the particles

description: Supplementary data for the following manuscript: Johannes Voß, Raphael Wittkowski, "Propulsion of nano- and microcones by a traveling ultrasound wave: dependence on orientation and aspect ratio of the particles"
description: R.W. is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) -- 283183152.
DOI: 10.5281/zenodo.5947177
title: Propulsion of nano- and microcones by a traveling ultrasound wave: dependence on orientation and aspect ratio of the particles

description: Supplementary data for the following manuscript: Johannes Voß, Raphael Wittkowski, "Propulsion of nano- and microcones by a traveling ultrasound wave: dependence on orientation and aspect ratio of the particles"
description: R.W. is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) -- 283183152.
DOI: 10.5281/zenodo.5913397
title: Ultrasound-propelled nano- and microspinners

description: Supplementary data for the following manuscript: Johannes Voß, Raphael Wittkowski, "Ultrasound-propelled nano- and microspinners".
description: R.W. is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – WI 4170/3-1.
DOI: 10.5281/zenodo.5913396
title: Ultrasound-propelled nano- and microspinners

description: Supplementary data for the following manuscript: Johannes Voß, Raphael Wittkowski, "Ultrasound-propelled nano- and microspinners".
description: R.W. is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – WI 4170/3-1.
DOI: 10.5281/zenodo.5913295
title: Acoustic propulsion of nano- and microcones: dependence on the viscosity of the surrounding fluid

description: Supplementary data for the following manuscript: Johannes Voß, Raphael Wittkowski, "Acoustic propulsion of nano- and microcones: dependence on the viscosity of the surrounding fluid".
description: R.W. is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – WI 4170/3-1.
DOI: 10.5281/zenodo.5913294
title: Acoustic propulsion of nano- and microcones: dependence on the viscosity of the surrounding fluid

description: Supplementary data for the following manuscript: Johannes Voß, Raphael Wittkowski, "Acoustic propulsion of nano- and microcones: dependence on the viscosity of the surrounding fluid".
description: R.W. is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – WI 4170/3-1.
DOI: 10.6073/pasta/1d2ec0bad48134f6924651c269ac1968
title: Eddy flux measurements during 2019 from low marsh site (Spartina alterniflora) within Shad Creek catchment, Rowley, Massachusetts, PIE LTER.

description: We deployed an eddy covariance system to measure ecosystem-atmosphere exchange of CO2 above a low marsh system (Spartina alterniflora) located within the Shad creek catchment off Plum Island Sound, Rowley MA. The data represents CO2 exchange for mid-April through early November 2019. This site was established in 2015.
DOI: 10.6084/m9.figshare.19232535
title: Simulation data and code

description: - PF_simulation_data.zipcontains Simulation data to create figure 2 of de Vries, Erten and Kokko- Code_PF.zip contains C++ code to create the data used to create figure 2 (see PF_simulation_data.zip for the datafiles produced), and it also contains the R script to create figure 2 from the data (Figure2_cloud_25.R). All code files were created by Pen, I., & Flatt, T. (2021). Asymmetry, division of labour and the evolution of ageing in multicellular organisms. <i>Philosophical Transactions of the Royal Society B</i>, <i>376</i>(1823), 20190729. C++ code is slightly adjusted to change output. <br>Note that the R script takes a long time to run (multiple days on our laptops), and uses a lot of swap memory, we advice running it on a server. Alternatively, you can edit the code to use less than the last 25 days bychanging this line: ddead% filter(t&gt;4975)to for example <br>ddead% filter(t&gt;4998)<br>to use the last 2 time steps only. However, note that there<br>will be insufficient data at high ages to estimate mortality rates.
DOI: 10.25838/d5p-30
title: Uncoupling of voltage- and ligand-induced activation in HCN2 channels by glycine inserts

description: Hyperpolarization-activated cyclic nucleotide-modulated (HCN) channels are tetramers that generate electrical rhythmicity in special brain neurons and cardiomyocytes. The channels are activated by membrane hyperpolarization. The binding of cAMP to the four available cyclic nucleotide-binding domains (CNBD) enhances channel activation. We analyzed in the present study the mechanism of how the effect of cAMP binding is transmitted to the pore domain (PD). Our strategy was to uncouple the C-linker (CL) from the channel core by inserting one to five glycine residues between the S6 gate and the A’-helix (constructs 1G to 5G). We quantified in full-length HCN2 channels the resulting functional effects of the inserted glycines by current activation as well as the structural dynamics and statics using molecular dynamics simulations and Constraint Network Analysis (CNA). We show functionally that already in 1G the cAMP effect on activation is lost and that with the exception of 3G and 5G the concentration-activation relationships are shifted to depolarized voltages with respect to HCN2. The strongest effect was found for 4G. Accordingly, the activation kinetics were accelerated by all constructs, again with the strongest effect in 4G. The simulations reveal that the average residue mobility of the CL and CNBD domains is increased in all constructs and that the junction between the S6 and A’-helix is turned into a flexible hinge, resulting in a destabilized gate in all constructs. Moreover, for 3G and 4G, there is a stronger downward displacement of the CL-CNBD than in HCN2 and the other constructs, resulting in an increased kink angle between S6 and A’-helix, which in turn loosens contacts between the S4-helix and the CL. This is suggested to promote a downward movement of the S4-helix, similar to the effect of hyperpolarization. In addition, exclusively in 4G, the selectivity filter in the upper pore region and parts of the S4-helix are destabilized. The results provide new insights into the intricate activation of HCN2 channels.
DOI: 10.15468/dl.nmankh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is ×Achnella caduca (Beal) Barkworth",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009195-180508205500799/datasets/export for details.
DOI: 10.15468/dl.42bydd
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arisaema polyphyllum (Blanco) Merr."
 ]
}

 The dataset includes 96 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011805-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zv57c6
title: Occurrence Download

description: A dataset containing 266464 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "not" : {
 "PublishingCountry" : [
 "is Norway"
 ]
 }
 },
 "Country is Svalbard and Jan Mayen"
 ]
}

 The dataset includes 266464 records from 557 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075729-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0wqjyp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is ×Anthematricaria dominii Rohlena",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009205-180508205500799/datasets/export for details.
DOI: 10.15468/dl.5gk5am
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carpesium lipskyi C.Winkl.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 148 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319662-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aehn45
title: Occurrence Download

description: A dataset containing 1477 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ateles paniscus (Linnaeus, 1758)"
 ]
}

 The dataset includes 1477 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016355-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fwu5g3
title: Occurrence Download

description: A dataset containing 396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pungitius pungitius (Linnaeus, 1758)",
 "Year 1000-1899"
 ]
}

 The dataset includes 396 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061013-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jp3n8d
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MOZ.3.10_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 64 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319670-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btthn8
title: Occurrence Download

description: A dataset containing 938 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anoplophora glabripennis (Motschulsky, 1854)"
 ]
}

 The dataset includes 938 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016367-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8jz3u
title: Occurrence Download

description: A dataset containing 10200 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine californica (Nutt.) Greene"
 ]
}

 The dataset includes 10200 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061007-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.set95w
title: Occurrence Download

description: A dataset containing 1178 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum boricuarum Hágsater & L.Sánchez"
 ]
}

 The dataset includes 1178 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159058-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.