cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8105018
title: <i>Echiniscus siticulosus</i> (Echiniscidae: <i>spinulosus</i> group), a new tardigrade from Western Australian scrub

description: Australian fauna is widely recognised for its high levels of endemism, and tardigrade fauna does not seem to be an exception in this respect. The richness of xerothermic habitats in Australia, often occupied by heterotardigrade family Echiniscidae, entails high abundance and uniqueness of echiniscid assemblages. A new gonochoristic/dioecious echiniscid species was found in large numbers in samples from Western Australia. <i>Echiniscus siticulosus</i> <b>sp. nov.</b>, characterised by dominant large cuticular pores in the dorsal sculpture and appendages in the form of spines, represents the <i>spinulosus</i> group but can be distinguished from the known members of this species complex by a unique combination of traits: peculiar faceting of the caudal plate formed by ridge-shaped epicuticular extensions and pore morphology. An amended phenotypic diagnosis of <i>Echiniscus spiniger</i> Richters 1904, the species morphologically most similar to the new species, is also presented.
DOI: 10.6084/m9.figshare.8105027.v1
title: Full length sequence and classification for circRNAs downloaded from circRNAdb

description: Here, the full length circRNA sequences and circRNA classification are given for the circRNAs downloaded from circbase, circRNAdb and plantcircbase database.The details for the annotation file and the reference genome are as follows: 1. <b>circbase and circRNAdb</b> The annotation file is downloaded from circRNAdb and the reference genome hg19 is downloaded from UCSC (http://hgdownload.soe.ucsc.edu/downloads.html#human). 2. <b>Arabidopsis thaliana</b> The reference genome and annotation file version TAIR10.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 3. <b>Poncirus trifoliata </b> The reference genome and annotation file version Citrus_clementina_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant 4. <b>Glycine max</b> The reference genome and annotation file version Glycine_max_v2.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 5. <b>Gossypium arboreum</b> The reference genome and annotation file version Gossypium_arboreum_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant/ 6. <b>Gossypium hirsutum</b> The reference genome and annotation file version NBI_Gossypium_hirsutum_v1.1 are downloaded from https://www.cottongen.org/data/download/genome_NBI_AD1 7. <b>Gossypium raimondii</b> The reference genome and annotation file version Graimondii_221 are downloaded from ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Graimondii/ 8. <b>Hordeum vulgare</b> The reference genome and annotation file version Hv_IBSC_PGSB_v2.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 9. <b>Oryza sativa</b> The reference genome and annotation file version IRGSP-1.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 10. <b>Solanum lycopersicum</b> The reference genome and annotation file version SL2.50.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 11. <b>Solanum tuberosum</b> The reference genome and annotation file version SolTub_3.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 12. <b>Triticum aestivum</b> The reference genome and annotation file version IWGSC1.0+popseq.29 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-29/ 13. <b>Zea mays</b> The reference genome and annotation file version AGPv4.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/<br>
DOI: 10.6084/m9.figshare.8105018.v1
title: <i>Echiniscus siticulosus</i> (Echiniscidae: <i>spinulosus</i> group), a new tardigrade from Western Australian scrub

description: Australian fauna is widely recognised for its high levels of endemism, and tardigrade fauna does not seem to be an exception in this respect. The richness of xerothermic habitats in Australia, often occupied by heterotardigrade family Echiniscidae, entails high abundance and uniqueness of echiniscid assemblages. A new gonochoristic/dioecious echiniscid species was found in large numbers in samples from Western Australia. <i>Echiniscus siticulosus</i> <b>sp. nov.</b>, characterised by dominant large cuticular pores in the dorsal sculpture and appendages in the form of spines, represents the <i>spinulosus</i> group but can be distinguished from the known members of this species complex by a unique combination of traits: peculiar faceting of the caudal plate formed by ridge-shaped epicuticular extensions and pore morphology. An amended phenotypic diagnosis of <i>Echiniscus spiniger</i> Richters 1904, the species morphologically most similar to the new species, is also presented.
DOI: 10.6084/m9.figshare.8105027.v2
title: Full length sequence and classification for circRNAs

description: Here, the full length circRNA sequences and circRNA classification are given for the circRNAs downloaded from circbase, circRNAdb and plantcircbase database.The details for the annotation file and the reference genome are as follows: 1. <b>circbase and circRNAdb</b> The annotation file is downloaded from circRNAdb (http://202.195.183.4:8000/circrnadb/resources.php) and the reference genome hg19 is downloaded from UCSC (http://hgdownload.soe.ucsc.edu/downloads.html#human). 2. <b>Arabidopsis thaliana</b> The reference genome and annotation version TAIR10.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 3. <b>Poncirus trifoliata </b> The reference genome and annotation version Citrus_clementina_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant 4. <b>Glycine max</b> The reference genome and annotation version Glycine_max_v2.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 5. <b>Gossypium arboreum</b> The reference genome and annotation version Gossypium_arboreum_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant/ 6. <b>Gossypium hirsutum</b> The reference genome and annotation version NBI_Gossypium_hirsutum_v1.1 are downloaded from https://www.cottongen.org/data/download/genome_NBI_AD1 7. <b>Gossypium raimondii</b> The reference genome and annotation version Graimondii_221 are downloaded from ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Graimondii/ 8. <b>Hordeum vulgare</b> The reference genome and annotation version Hv_IBSC_PGSB_v2.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 9. <b>Oryza sativa</b> The reference genome and annotation version IRGSP-1.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 10. <b>Solanum lycopersicum</b> The reference genome and annotation version SL2.50.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 11. <b>Solanum tuberosum</b> The reference genome and annotation version SolTub_3.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 12. <b>Triticum aestivum</b> The reference genome and annotation version IWGSC1.0+popseq.29 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-29/ 13. <b>Zea mays</b> The reference genome and annotation version AGPv4.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
DOI: 10.6084/m9.figshare.8105027.v3
title: Full length sequence and classification for circRNAs

description: Here, the full length circRNA sequences and circRNA classification are given for the circRNAs downloaded from circbase, circRNAdb and plantcircbase database.The details for the annotation file and the reference genome are as follows: 1. <b>circbase and circRNAdb</b> The annotation file is downloaded from circRNAdb (http://202.195.183.4:8000/circrnadb/resources.php) and the reference genome hg19 is downloaded from UCSC (http://hgdownload.soe.ucsc.edu/downloads.html#human). 2. <b>Arabidopsis thaliana</b> The reference genome and annotation version TAIR10.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 3. <b>Poncirus trifoliata </b> The reference genome and annotation version Citrus_clementina_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant 4. <b>Glycine max</b> The reference genome and annotation version Glycine_max_v2.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 5. <b>Gossypium arboreum</b> The reference genome and annotation version Gossypium_arboreum_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant/ 6. <b>Gossypium hirsutum</b> The reference genome and annotation version NBI_Gossypium_hirsutum_v1.1 are downloaded from https://www.cottongen.org/data/download/genome_NBI_AD1 7. <b>Gossypium raimondii</b> The reference genome and annotation version Graimondii_221 are downloaded from ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Graimondii/ 8. <b>Hordeum vulgare</b> The reference genome and annotation version Hv_IBSC_PGSB_v2.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 9. <b>Oryza sativa</b> The reference genome and annotation version IRGSP-1.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 10. <b>Solanum lycopersicum</b> The reference genome and annotation version SL2.50.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 11. <b>Solanum tuberosum</b> The reference genome and annotation version SolTub_3.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 12. <b>Triticum aestivum</b> The reference genome and annotation version IWGSC1.0+popseq.29 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-29/ 13. <b>Zea mays</b> The reference genome and annotation version AGPv4.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
DOI: 10.6084/m9.figshare.8105027.v4
title: Full length sequence and classification for circRNAs

description: Here, the full length circRNA sequences and circRNA classification are given for the circRNAs downloaded from circbase, circRNAdb and plantcircbase database.The details for the annotation file and the reference genome are as follows: 1. <b>circbase and circRNAdb</b> The annotation file is downloaded from circRNAdb (http://202.195.183.4:8000/circrnadb/resources.php) and the reference genome hg19 is downloaded from UCSC (http://hgdownload.soe.ucsc.edu/downloads.html#human). 2. <b>Arabidopsis thaliana</b> The reference genome and annotation version TAIR10.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 3. <b>Poncirus trifoliata </b> The reference genome and annotation version Citrus_clementina_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant 4. <b>Glycine max</b> The reference genome and annotation version Glycine_max_v2.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 5. <b>Gossypium arboreum</b> The reference genome and annotation version Gossypium_arboreum_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant/ 6. <b>Gossypium hirsutum</b> The reference genome and annotation version NBI_Gossypium_hirsutum_v1.1 are downloaded from https://www.cottongen.org/data/download/genome_NBI_AD1 7. <b>Gossypium raimondii</b> The reference genome and annotation version Graimondii_221 are downloaded from ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Graimondii/ 8. <b>Hordeum vulgare</b> The reference genome and annotation version Hv_IBSC_PGSB_v2.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 9. <b>Oryza sativa</b> The reference genome and annotation version IRGSP-1.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 10. <b>Solanum lycopersicum</b> The reference genome and annotation version SL2.50.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 11. <b>Solanum tuberosum</b> The reference genome and annotation version SolTub_3.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 12. <b>Triticum aestivum</b> The reference genome and annotation version IWGSC1.0+popseq.29 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-29/ 13. <b>Zea mays</b> The reference genome and annotation version AGPv4.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
DOI: 10.6084/m9.figshare.8105027.v5
title: Full length sequence and classification for circRNAs

description: Here, the full length circRNA sequences and circRNA classification are given for the circRNAs downloaded from circbase, circRNAdb and plantcircbase database.The details for the annotation file and the reference genome are as follows: 1. <b>circbase and circRNAdb</b> The annotation file is downloaded from circRNAdb (http://202.195.183.4:8000/circrnadb/resources.php) and the reference genome hg19 is downloaded from UCSC (http://hgdownload.soe.ucsc.edu/downloads.html#human). 2. <b>Arabidopsis thaliana</b> The reference genome and annotation version TAIR10.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 3. <b>Poncirus trifoliata </b> The reference genome and annotation version Citrus_clementina_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant 4. <b>Glycine max</b> The reference genome and annotation version Glycine_max_v2.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 5. <b>Gossypium arboreum</b> The reference genome and annotation version Gossypium_arboreum_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant/ 6. <b>Gossypium hirsutum</b> The reference genome and annotation version NBI_Gossypium_hirsutum_v1.1 are downloaded from https://www.cottongen.org/data/download/genome_NBI_AD1 7. <b>Gossypium raimondii</b> The reference genome and annotation version Graimondii_221 are downloaded from ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Graimondii/ 8. <b>Hordeum vulgare</b> The reference genome and annotation version Hv_IBSC_PGSB_v2.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 9. <b>Oryza sativa</b> The reference genome and annotation version IRGSP-1.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 10. <b>Solanum lycopersicum</b> The reference genome and annotation version SL2.50.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 11. <b>Solanum tuberosum</b> The reference genome and annotation version SolTub_3.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 12. <b>Triticum aestivum</b> The reference genome and annotation version IWGSC1.0+popseq.29 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-29/ 13. <b>Zea mays</b> The reference genome and annotation version AGPv4.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
DOI: 10.6084/m9.figshare.8104973
title: Bund removal - PLOS ONE - DATASET

description: remote sensing classification and water quality logging dataset for the Boolgooroo region of the Mungalla wetlands in North Queensland - between October 2012 and August 2017. Datasets represent before and after bund removal changes due to renewed tidal ingress. Logger locations were 50m, 250m and 450m above and 50m,250m below the bund location - these files are excel format with headers that are self explanatory. Site classification files are in shapefile format with each class in a "class" field within the attribute tables. High resolution RGB imagery is included for comparison. Supplementary files for rainfall and tide height are also included as excel files.
DOI: 10.6084/m9.figshare.8104973.v1
title: Bund removal - PLOS ONE - DATASET

description: remote sensing classification and water quality logging dataset for the Boolgooroo region of the Mungalla wetlands in North Queensland - between October 2012 and August 2017. Datasets represent before and after bund removal changes due to renewed tidal ingress. Logger locations were 50m, 250m and 450m above and 50m,250m below the bund location - these files are excel format with headers that are self explanatory. Site classification files are in shapefile format with each class in a "class" field within the attribute tables. High resolution RGB imagery is included for comparison. Supplementary files for rainfall and tide height are also included as excel files.
DOI: 10.6084/m9.figshare.8104928
title: Dataset for: Trend Assessment for Daily Snow Depths with Changepoint Considerations

description: This paper develops methods to estimate a long-term trend in a daily snow depth record. The methods use a storage equation model for the daily snow depths that allows for seasonality, support set features (snow depths cannot be negative), correlation, and mean level shift changepoint features. Changepoints can occur in snow processes whenever observing stations move or station instrumentation is changed; they are critical features to consider when estimating a long-term trend. A likelihood objective function is developed for the storage model and is used to estimate model parameters. Genetic algorithms are used to optimize a minimum descriptive length model selection criterion that estimates the changepoint numbers and locations. The methods are applied in the analysis of a daily series recorded near Warm Lake, Idaho from 1948-2009.
DOI: 10.6084/m9.figshare.8104811
title: col_0.2_scripts.zip

description: Collisions of 0.2 offset with almost completed jupyter notebook, contains bash scripts, python scripts for multiple size plotting<br>
DOI: 10.6084/m9.figshare.8104826
title: demographic profile of gastric cancer in Afghanistan

description: Data of patients diagnosed with gastric cancer from March 2018 to march 2019 at department of oncology of Jamhoriat Hospital, Kabul, Afghanistan. Variables of interest included: age, gender, ethnicity and place of residence of the patients.
DOI: 10.6084/m9.figshare.8104928.v1
title: Dataset for: Trend Assessment for Daily Snow Depths with Changepoint Considerations

description: This paper develops methods to estimate a long-term trend in a daily snow depth record. The methods use a storage equation model for the daily snow depths that allows for seasonality, support set features (snow depths cannot be negative), correlation, and mean level shift changepoint features. Changepoints can occur in snow processes whenever observing stations move or station instrumentation is changed; they are critical features to consider when estimating a long-term trend. A likelihood objective function is developed for the storage model and is used to estimate model parameters. Genetic algorithms are used to optimize a minimum descriptive length model selection criterion that estimates the changepoint numbers and locations. The methods are applied in the analysis of a daily series recorded near Warm Lake, Idaho from 1948-2009.
DOI: 10.6084/m9.figshare.8104811.v1
title: col_0.2_scripts.zip

description: Collisions of 0.2 offset with almost completed jupyter notebook, contains bash scripts, python scripts for multiple size plotting<br>
DOI: 10.6084/m9.figshare.8104826.v1
title: demographic profile of gastric cancer in Afghanistan

description: Data of patients diagnosed with gastric cancer from March 2018 to march 2019 at department of oncology of Jamhoriat Hospital, Kabul, Afghanistan. Variables of interest included: age, gender, ethnicity and place of residence of the patients.
DOI: 10.6084/m9.figshare.8104793
title: Supplemental Table 1.docx

description: Primary antibodies with details on concentrations used, species and clonality, supplier, validation and blocking buffers used.
DOI: 10.6084/m9.figshare.8104784
title: Bioclimatic data.zip

description: Distribution and Bioclimatic data of V. carnosa<br>
DOI: 10.6084/m9.figshare.8104736
title: Burned_Areas.zip

description: Burned areas Dataset for 3 sites in Amazonia
DOI: 10.6084/m9.figshare.8104736.v1
title: Burned_Areas.zip

description: Burned areas Dataset for 3 sites in Amazonia
DOI: 10.6084/m9.figshare.8104730
title: distribution.csv

description: Distributional raw data, Valeriana carnosa <br>
DOI: 10.6084/m9.figshare.8104718
title: CURRENT.zip

description: bioclimatic variables. Raw data<br>
DOI: 10.6084/m9.figshare.8104784.v1
title: elevation_slope.zip

description: Slope and elevation raw data<br>
DOI: 10.6084/m9.figshare.8104730.v1
title: distribution.csv

description: Distributional raw data, Valeriana carnosa <br>
DOI: 10.6084/m9.figshare.8104718.v1
title: CURRENT.zip

description: bioclimatic variables. Raw data<br>
DOI: 10.6084/m9.figshare.8104784.v2
title: 2070RCP6.0.zip

description: Bioclimatic data<br>
DOI: 10.6084/m9.figshare.8104784.v4
title: Bioclimatic data.zip

description: Distribution and Bioclimatic data of V. carnosa<br>
DOI: 10.6084/m9.figshare.8104784.v3
title: Bioclimatic data.zip

description: Distribution and Bioclimatic data of V. carnosa<br>
DOI: 10.6084/m9.figshare.8104559
title: Supplemantary material

description: This presents supplementary material from Gomes, B.T. et al, submitted to Palynology: Raw pollen counts and R scripts.
DOI: 10.6084/m9.figshare.8104499
title: Data for 'Multi-scale drivers of plant diversity in ecological corridors across Europe – implications for management'

description: Species_matrix.csv: dataset with precentage cover of all vascular plant species (colmuns) in the 336 vegetation plots (rows)<br>environment_hf.csv:dataset with environmental variables (colmuns) for the 168 vegetation plots (rows) in hedgerows and forestsenvironment_rg.csv:dataset with environmental variables (colmuns) for the 168 vegetation plots (rows) in road verges and grasslands
DOI: 10.6084/m9.figshare.8104559.v2
title: Supplemantary material

description: This presents supplementary material from Gomes, B.T. et al, submitted to Palynology: Raw pollen counts and R scripts.
DOI: 10.6084/m9.figshare.8104499.v1
title: Data for 'Multi-scale drivers of plant diversity in ecological corridors across Europe – implications for management'

description: Species_matrix.csv: dataset with precentage cover of all vascular plant species (colmuns) in the 336 vegetation plots (rows)<br>environment_hf.csv:dataset with environmental variables (colmuns) for the 168 vegetation plots (rows) in hedgerows and forestsenvironment_rg.csv:dataset with environmental variables (colmuns) for the 168 vegetation plots (rows) in road verges and grasslands
DOI: 10.6084/m9.figshare.8104559.v1
title: Supplementary Table 2

description: This table presents raw pollen counts from Gomes, B.T. et al, submitted to Palynology.
DOI: 10.6084/m9.figshare.8101259
title: FORTRAN CODES

description: This compressed folder contains the FORTRAN codes that we used during the declustring process of the compiled and unified catalog.
DOI: 10.6084/m9.figshare.8101259.v1
title: FORTRAN CODES

description: This compressed folder contains the FORTRAN codes that we used during the declustring process of the compiled and unified catalog.
DOI: 10.6084/m9.figshare.8101208
title: Data from "Large carnivore damage in Europe: analysis of compensation and prevention programs"

description: This folder contains data from "Large carnivore damage in Europe: analysis of compensation and prevention programs" (Bautista et al. 2019, Biological Conservation 235C (2019) pp. 308-316).<br>The raw data includes the economic costs of programs to compensate and prevent large carnivore damage in Europe and associated socio-economic correlates. The data have been compiled from the literature and official databases from the organizations responsible of compensation and prevention programs.<br>Along with the raw data we provide METADATA files with the information about each variable present in the data set. For details about the methods we refer to the original publication.