cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25713852
title: Additional file 5 - scripts for microbiota analysis

description: Microbiota analysis was carried out in R using the DADA2 pipeline (Callahan et al., 2016), and taxonomic categories were assigned using the Silva Database (release 138.1) as a reference for the assignment (Quast et al., 2012). Alpha (Shannon, Chao1, and Simpson indices) and Beta diversity (calculated as Bray Curtis distance matrix), as well as the abundance of taxonomic categories, were calculated and analysed with R software 3.6, using the PhyloSeq (McMurdie et al., 2013), Vegan (Dixon, 2003), and microbiomeMarker (Cao et al., 2022) packages. Differences between groups regarding Alpha diversity indices were tested using a linear mixed model that included category (IUGR, NORM), time (T1, T2, T3, T4), and their interaction as fixed factors, with the litter of origin considered as a random factor. Then, a separate model within each time point was performed including only the category as a fixed factor and the litter of origin as a random factor. For Beta diversity, a dissimilarity matrix was constructed using the Bray–Curtis distance matrix as metrics, and the results were plotted using a non-metric multidimensional scaling (NMDS) plot. Furthermore, the betadisper test was conducted to test differences in the samples’ dispersion among the groups. Differences were tested using a PERMANOVA (Adonis) model with 9,999 permutations, including category, time, and their interaction, and litter of origin as factors. A second PERMANOVA model was then performed within each time point, including the category as a factor. For the differential analysis of taxa, the LEfSe algorithm was used at the genus level. Specifically, taxa were considered significant if they possessed a Linear Discriminant Analysis (LDA) score &gt; 4 and a Padj &lt; 0.05 within each time point, including the category as a factor.References:Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP: DADA2: High-resolution sample inference from Illumina amplicon data. Nature Methods 2016, 13:581-583.Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO: The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research 2012, 41:D590-D596.McMurdie PJ, Holmes S: phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PloS One 2013, 8:e61217.Dixon P: VEGAN, a package of R functions for community ecology. Journal of Vegetation Science 2003, 14:927-930.Cao Y, Dong Q, Wang D, Zhang P, Liu Y, Niu C: microbiomeMarker: an R/Bioconductor package for microbiome marker identification and visualization. Bioinformatics 2022, 38:4027-4029.
DOI: 10.15468/dl.67e9f6
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lagochilus aucheri Boiss."
 ]
}

 The dataset includes 54 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003028-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ad8rtq
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is CardObs : Observations naturalistes issues de l'outil de saisie et gestion CardObs mis en place par le Service du Patrimoine Naturel (MNHN) / UMS PatriNat (OFB - CNRS - MNHN) - Données naturalistes d'Olivier GARGOMINY saisies sous cardObs",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 40 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217378-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88bvcf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lagochilus botschantzevii Kamelin & Tzukerv."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003031-230530130749713/datasets/export for details.
DOI: 10.15468/dl.kfftff
title: Occurrence Download

description: A dataset containing 4374 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fimbristylis ferruginea (L.) Vahl"
 ]
}

 The dataset includes 4374 records from 203 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217377-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3x9y7
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leiothrix dielsii Ruhland"
 ]
}

 The dataset includes 20 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005649-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v78fjp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fimbristylis eichleriana Govind."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217355-230224095556074/datasets/export for details.
DOI: 10.15468/dl.phyapx
title: Occurrence Download

description: A dataset containing 3098 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-115.11148 27.56655,-112.0868 27.49064,-113.38044 29.74655,-114.03213 29.83492,-114.52089 30.45131,-114.66345 31.3947,-114.70418 32.70649,-114.74562 32.71709,-117.2465 32.53146,-116.44987 30.61134,-115.46255 28.80889,-115.62375 28.11806,-115.11148 27.56655))",
 "HasGeospatialIssue is false",
 "TaxonKey is Falco peregrinus Tunstall, 1771"
 ]
}

 The dataset includes 3098 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005650-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gae2vu
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fimbristylis elegans S.T.Blake"
 ]
}

 The dataset includes 58 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217359-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vshas3
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-95.34297 19.40560,-48.70124 19.40560,-48.70124 38.05431,-95.34297 38.05431,-95.34297 19.40560))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Heloderma Wiegmann, 1829"
 ]
}

 The dataset includes 34 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256913-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cn2t5k
title: Occurrence Download

description: A dataset containing 198575 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sinapis arvensis L."
 ]
}

 The dataset includes 198575 records from 1611 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007673-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2d4ivu
title: Occurrence Download

description: A dataset containing 1931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stellaria pallida (Dumort.) Piré",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1931 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004903-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4yj63w
title: Occurrence Download

description: A dataset containing 3094 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Calothorax lucifer (Swainson, 1827)"
 ]
}

 The dataset includes 3094 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161889-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbkfee
title: Occurrence Download

description: A dataset containing 1683 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Tilmatura dupontii (R.Lesson, 1832)"
 ]
}

 The dataset includes 1683 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161888-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k70w59
title: Occurrence Download

description: A dataset containing 25002 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lissotriton helveticus (Razoumovsky, 1789)"
 ]
}

 The dataset includes 25002 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004903-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stendf
title: Occurrence Download

description: A dataset containing 128967 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dactylorhiza majalis (Rchb.) P.F.Hunt & Summerh."
 ]
}

 The dataset includes 128967 records from 450 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161883-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kq22nq
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mimosa luisana Brandegee"
 ]
}

 The dataset includes 296 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004903-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvbkg6
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nyctibius griseus griseus"
 ]
}

 The dataset includes 96 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161887-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zo8i8a
title: Occurrence Download

description: A dataset containing 295 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Charadrius alexandrinus Linnaeus, 1758"
 ]
}

 The dataset includes 295 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004903-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zq3ene
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phalaenopsis Blume",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 233 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004904-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpf3bn
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nyctibius griseus (J.F.Gmelin, 1789)"
 ]
}

 The dataset's 4 records were derived from 198 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161892-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g0qfjw
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystichum maximum M.Kessler & A.R.Sm."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004904-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.keatbd
title: Occurrence Download

description: A dataset containing 293 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliconius erato lativitta"
 ]
}

 The dataset includes 293 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161901-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqorbz
title: Occurrence Download

description: A dataset containing 3966 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ephedra fragilis Desf."
 ]
}

 The dataset includes 3966 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004904-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfsy6m
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Emarginula bicancellata Montrouzier, 1860"
 ]
}

 The dataset includes 23 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054047-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yziurb
title: Occurrence Download

description: A dataset containing 602 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambrosia maritima Ferrero ex DC."
 ]
}

 The dataset includes 602 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004904-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghxjcd
title: Occurrence Download

description: A dataset containing 4372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-97.22387 16.88834,-97.14201 16.84795,-97.08879 16.84973,-96.91038 16.90088,-96.87406 16.90257,-96.85779 16.90069,-96.76541 16.90128,-96.73195 16.91155,-96.70485 16.93924,-96.732 16.9867,-96.78332 17.00016,-96.8173 17.01601,-96.8566 17.03423,-96.9208 17.02853,-97.02441 17.00904,-97.03088 17.00078,-97.0982 17.00011,-97.18273 16.99115,-97.22436 16.97307,-97.22387 16.88834))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4372 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161890-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.olyjx7
title: Occurrence Download

description: A dataset containing 1204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "DecimalLatitude is greater than 33.0389778961705",
 "DecimalLatitude is less than 33.4155891985229",
 "DecimalLongitude is greater than -108.496086306341",
 "DecimalLongitude is less than -108.021566891624"
 ]
}

 The dataset includes 1204 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004904-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8zkox
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herichthys minckleyi (Kornfield & Taylor, 1983)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 138 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004904-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3cyvd
title: Occurrence Download

description: A dataset containing 4211 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artibeus jamaicensis yucatanicus J.A.Allen, 1904"
 ]
}

 The dataset includes 4211 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004904-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25719753
title: Model data for article "A Positive Indian Ocean Dipole Leads to an Indian Ocean Basin Mode that Favors the development of La Niña the Following Year"

description: Model data for article "A Positive Indian Ocean Dipole Leads to an Indian Ocean Basin Mode that Favors the development of La Niña the Following Year"Jing Wang<sup>a,b,†</sup><sup>,</sup><sup>*</sup>, Shouwen Zhang<sup>c,†</sup>, Yuanlong Li<sup>a,b</sup> and Janet Sprintall<sup>d</sup><sup>a</sup>Key Laboratory of Ocean Observation and Forecasting, Key Laboratory of Ocean Circulation and Waves, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China<sup>b</sup>University of Chinese Academy of Sciences, Beijing, China<sup>c</sup>Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, China<sup>d</sup>Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093, USA
DOI: 10.6084/m9.figshare.25719753.v2
title: Model data for article "A Positive Indian Ocean Dipole Leads to an Indian Ocean Basin Mode that Favors the development of La Niña the Following Year"

description: Model data for article "A Positive Indian Ocean Dipole Leads to an Indian Ocean Basin Mode that Favors the development of La Niña the Following Year"Jing Wang<sup>a,b,†</sup><sup>,</sup><sup>*</sup>, Shouwen Zhang<sup>c,†</sup>, Yuanlong Li<sup>a,b</sup> and Janet Sprintall<sup>d</sup><sup>a</sup>Key Laboratory of Ocean Observation and Forecasting, Key Laboratory of Ocean Circulation and Waves, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China<sup>b</sup>University of Chinese Academy of Sciences, Beijing, China<sup>c</sup>Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, China<sup>d</sup>Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093, USA
DOI: 10.6084/m9.figshare.25719753.v1
title: Model data for article "A Positive Indian Ocean Dipole Leads to an Indian Ocean Basin Mode that Favors the development of La Niña the Following Year"

description: Model data for article "A Positive Indian Ocean Dipole Leads to an Indian Ocean Basin Mode that Favors the development of La Niña the Following Year"Jing Wang<sup>a,b,†</sup><sup>,</sup><sup>*</sup>, Shouwen Zhang<sup>c,†</sup>, Yuanlong Li<sup>a,b</sup> and Janet Sprintall<sup>d</sup><sup>a</sup>Key Laboratory of Ocean Observation and Forecasting, Key Laboratory of Ocean Circulation and Waves, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China<sup>b</sup>University of Chinese Academy of Sciences, Beijing, China<sup>c</sup>Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, China<sup>d</sup>Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093, USA
DOI: 10.15468/dl.v5dtc6
title: Occurrence Download

description: A dataset listing the 70 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.38112 29.4585,-98.37259 29.4585,-98.37259 29.47472,-98.38112 29.47472,-98.38112 29.4585))",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 70 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004744-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26605006.v1
title: Additional file 2 of Subjective evaluation of facial asymmetry with three-dimensional simulated images among the orthodontists and laypersons: a cross-sectional study

description: Additional file 2.
DOI: 10.34770/wz62-f790
title: Data for 'Environmental Benefits and Household Costs of Clean Heating Options in Northern China'

description: This dataset is created for the paper titled 'Environmental Benefits
 and Household Costs of Clean Heating Options in Northern China' and
 published on Nature Sustainability. Based on a 2015 regional anthropogenic
 emission inventory (base case), we propose seven counterfactual scenarios
 in which all 2015 residential solid fuel heating in northern China
 switches to one of the following non-district heating options: clean coal
 with improved stoves (CCIS), natural gas heaters (NGH), resistance heaters
 (RH), or air-to-air heat pumps (AAHP). This dataset provides the following
 gridded information for the base case and each clean heating scenario: (1)
 annual residential heating emissions for PM2.5/NOx/SO2; (2) monthly mean
 surface PM2.5 concentrations from the WRF-Chem model; (3) annual
 PM2.5-related premature deaths calculated by the GEMM model; (4) 2015
 population in China; (5) mask for provinces in China; (6) longitude and
 latitude of each grid center.
DOI: 10.6084/m9.figshare.26570011.v1
title: Additional file 1 of Comprehensive analysis of PHGDH for predicting prognosis and immunotherapy response in patients with endometrial carcinoma

description: Supplementary Material 1
DOI: 10.15468/dl.3n6cwv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.928706 -32.580338, 148.928706 -32.58483, 148.933197 -32.58483, 148.933197 -32.580338, 148.928706 -32.580338))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067079-240626123714530/datasets/export for details.