cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.950138
title: Biogeographic schemes of benthic fauna species on the Deep Brazilian Margin

description: Benthic species records of deep-sea fauna distributed along the Brazilian Continental Margin (BCM), synthesized from published databases, were mapped in ArcGIS and the here included shapefiles for each phylum were annexed. Two existing biogeographic schemes for the South Atlantic bathyal and abyssal depths (Spalding et al., 2007; Watling et al., 2013) were tested using the distribution data of benthic species along the BCM. A third biogeographic scheme was tested to assess the relationship between benthic fauna and deep water masses within the Brazilian EEZ. Species occurrences were assigned to the biogeographical units of each biogeographical scheme from which the three occurrences databases (watling, hybrid, water masses), included here, were generated.
description: Watling_scheme: Database of the deep-sea benthic records distributed following the biogeographical classification of Watling et al. (2013)Hybrid_scheme: Database of the deep-sea benthic records distributed following the MEOW biogeographical classification (Spalding et al., 2007) for upper bathyal depths (200-800 m), and Watling et al. (2013) for lower bathyal (800-3500 m) and abyssal depths (&gt; 3500 m).Water_masses_scheme: Database of the deep-sea benthic records following the distribution of water masses in the water column for the South Atlantic.BCM_"Taxon"_occurence_maps: Shapefiles of the deep-sea benthic occurrences distributed along the Brazilian continental marginBenthic Fauna Database: Final Database of the deep-sea benthic records distributed along the Brazilian continental margin. Scientific species names included here correspond to the WoRMS terminology valid at the time of publication. The original version of scientific species names submitted by the authors (including several unaccepted names) is included in dataset https://doi.org/10.1594/PANGAEA.955785.Abbreviations: A: Annelida; BRA: Brachiopoda; BRY: Bryozoa; CN: Cnidaria; CR: Crustacea; ECH: Echinodermata; M: Mollusca; MEOW: Marine Ecoregions of The World; NEM: Nematoda; POR: Porifera; SIP: Sipuncula
DOI: 10.1594/pangaea.950325
title: Measurements of alive and dead colony sections of Madrepora oculata cold-water corals occuring on coral mounds off Angola (SE Atlantic)

description: Alive and dead colony sections of Madrepora oculata cold-water corals were measured from underwater video transects carried out to characterize benthic communities. Data were collected from 17th to 25th January 2016 off Angola in 6 coral mounds. Video transects were recorded with the Remotely Operated Vehicle SQUID during the ANNA expedition (Hebbeln et al. 2016). The data included in this dataset have been published in Orejas et al. (2021).
description: Average total length of each colony and length of dead and alive sections
DOI: 10.1594/pangaea.950331
title: Occurences of Madrepora oculata on coral mounds off Angola (SE Atlantic)

description: This dataset includes occurrence data for the cold-water coral Madrepora oculata obtained from underwater video transects performed to characterize benthic communities. Data were collected from 17th to 25th January 2016 off Angola on 6 coral mounds. Video transects were carried out with the Remotely Operated Vehicle SQUID during the ANNA expedition (Hebbeln et al. 2016). The information included in this dataset have been published in the paper Orejas et al. (2021).
DOI: 10.1594/pangaea.953861
title: Abundance of zooplankton at the Cape Verde Ocean Observatory (CVOO) as quantified by day/night multinet hauls

description: Zooplankton samples were collected during different cruises (2012-2019) using the same Hydrobios Multinet Midi (0.25m^2 net opening, 200µm mesh, five nets) in vertical hauls from 1000m to the surface, with depth strata 1000-600-300-200-100-0. Samples were size-fractionated, digitized and sorted into taxonomic categories on Ecotaxa (https://ecotaxa.obs-vlfr.fr/prj/6139). Using area to biomass conversion factors from Lehette & Hernandez-Leon 2006, individual biomass was estimated. Data were aggregated into summed abundance (ind m^3) and biomass (µg DW m^3) for each taxon.
description: Each row is one sample (i.e. one net stratum).
DOI: 10.1594/pangaea.951639
title: Grain size distribution of Wadden Sea sediment used in an experiment on sediment exposure of juvenile Caryophyllia (Caryophyllia) huinayensis

description: This table shows the grain size distribution of sediment used for a 12-week sediment exposure experiment, to test how juvenile Caryophyllia (Caryophyllia) huinayensis perform under increased sedimentation. Surface (1 cm) sediment samples were collected from the Wadden Sea in front of Spieker-Neufeld in October 2020 and February 2021. Prior to the use in the experiment, the sediment was sieved into fractions that were mixed proportionally to match the size range of the sediments in Comau Fjord (approx. 42°11' – 42°29'S and 72°35' – 72°22'E, a natural habitat of C. huinayensis). Organic carbon was then removed with H2O2 until the reaction stopped and the sediment was washed for neutralisation. Grain size measurements of the sediment used in the experiments were performed before, during and after the experiment in the Particle-Size Laboratory at MARUM, University of Bremen with a Beckman Coulter Laser Diffraction Particle Size Analyzer LS 13320 that provides grain size distributions in the size range from 0.04 to 2000 μm, divided into 116 size classes.
description: This dataset was generated within the framework of the co-operation between the Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research (programme: 'Changing Earth – Sustaining our Future', Topic 4.2), the Huinay Scientific Field Station, European Union's Horizon 2020 iAtlantic project (Grant Agreement No. 818123) and the Centre for Marine Environmental Sciences of the University of Bremen.
DOI: 10.1594/pangaea.953863
title: Biomass of zooplankton at the Cape Verde Ocean Observatory (CVOO) as quantified by day/night multinet hauls

description: Zooplankton samples were collected during different cruises (2012-2019) using the same Hydrobios Multinet Midi (0.25m^2 net opening, 200µm mesh, five nets) in vertical hauls from 1000m to the surface, with depth strata 1000-600-300-200-100-0. Samples were size-fractionated, digitized and sorted into taxonomic categories on Ecotaxa (https://ecotaxa.obs-vlfr.fr/prj/6139). Using area to biomass conversion factors from Lehette & Hernandez-Leon 2006, individual biomass was estimated. Data were aggregated into summed abundance (ind m^3) and biomass (µg DW m^3) for each taxon.
description: Each row is one sample (i.e. one net stratum).
DOI: 10.1594/pangaea.955785
title: Database of deep-sea benthic fauna occurrences along the Brazilian Continental Margin (BCM)

description: The dataset contains species occurrence records of deep-sea benthic fauna distributed along the Brazilian Continental Margin (BCM). Benthic records from existing and openly published databases available online were synthesized to obtain the deep-sea benthic diversity of the Brazilian Exclusive Economic Zone (EEZ). Only records that were identified to the species level and distributed between 200 and 5000 m water depth were included in the final, standardised database.
description: Fauna database of deep-sea benthic species records distributed along the Brazilian continental margin.Spelling mistakes in scientific species names were corrected based on the (currently) accepted WoRMS catalogue entry, while full species identification (names) submitted by the author(s) were not modified. and thus may include currently unaccepted species names. The database file included in the sister dataset (https://doi.org/10.1594/PANGAEA.950138) contains species names modified according to the valid WoRMS terminology at the time of publication (November 2022).
DOI: 10.1594/pangaea.955091
title: Carbon and nitrogen stable isotopes of benthic megafauna on the Angolan cold-water coral reefs (SE Atlantic)

description: We used carbon and nitrogen stable isotope (δ13C and δ15N) analyses to investigate the trophic network of the CWC reef habitat off Angola (SE Atlantic Ocean). Samples were collected in January 2016 during the M122 (“ANNA”) expedition on board R/V Meteor. In total, 18 reef sites, including seven CWC mound settings over a bathymetric range of 250 to 530 m water depth, were sampled for stable isotope analyses. Samples of organisms belonging to the taxa Porifera, Cnidaria, Arthropoda, Annelida, Echinodermata and Chordata were collected by means of a box corer, a Van-Veen grab sampler and the Remotely Operated Vehicle (ROV) SQUID (MARUM, Bremen, Germany). To investigate potential food sources of the benthic megafauna, three types of Particulate Organic Matter (POM) were collected: Suspended Particulate Organic Matter (SPOM) was collected with a McLane phytoplankton pump; settling SPOM was collected with a sediment trap (SPOM trap) and sediment samples were collected with a box corer and a grab sampler. Analyses of benthic megafauna were performed using a Elementar IsoPrime 100 isotope ratio–mass spectrometry (IR–MS) (IsoPrime Ltd.) coupled to a CNS elemental analyzer (Elementar Vario Pyro Cube EA CNS; Elementar Analysensysteme GmbH), while POM samples were analyzed by a Delta V Advantage IR–MS coupled online to an elemental analyzer (Flash 2000 EA-IRMS) by a ConFlo IV (Thermo Fisher Scientific Inc.). Vienna Pee Dee belemnite (V.P.D.B.) for carbon, and atmospheric N2 (Air) for nitrogen, were used as reference materials, and stable isotope values are reported in respect to that.
DOI: 10.1594/pangaea.961221
title: Processed CO2 measurements during the 2021-2022 Saildrone 1079 mission (Eastern Tropical Atlantic area)

description: In the framework of the EuroSea project (Task 7.3), a demonstration mission in the Tropical Atlantic has been conducted to enhance and optimize the network design of the Tropical Atlantic Observing System (TAOS) following an integrative multi-platform approach. One Gen6 Saildrone Explorer USV equipped with a CTD, wind, and carbon measurements systems sailed to the Cape Verde region where it acquired data between September 2021 and February 2023. Objectives for this mission include developing an integrated multi-platform approach to improving carbon monitoring, data quality, and regional upscaling from moored instrumentation, biogeochemical Argo floats, autonomous surface observation, and remote sensing products. The present dataset is also part of the SOCAT 2023 database.
DOI: 10.1594/pangaea.962227
title: PORTASPEC shipboard determined chemical composition of ferromanganese crusts for L9-84-CP expedition (R/V S.P. Lee)

description: Mobile laboratories are important to the exploration geochemist because they offer rapid chemical analyses of geologic materials in the field. This permits modification of the sampling plan in response to significant findings, rather than following a planned sampling scheme and leaving any follow-up to a later time. The portable PORTASPEC X-ray spectrograph (Pitchford Scientific instruments Division of Hankison Corporation) Model 2501 was used on ferromanganese crusts during the L9-84-CP (R/V S.P. Lee) expedition by the United States Geological Survey. The composition in major elements was averaged over a collection of samples for each station.
description: From 1983 until 1989 NOAA-NCEI compiled the NOAA-MMS Marine Minerals Geochemical Database from journal articles, technical reports and unpublished sources from other institutions. At the time it was the most extended data compilation on ferromanganese deposits world wide. Initially published in a proprietary format incompatible with present day standards it was jointly decided by AWI and NOAA to transcribe this legacy data into PANGAEA. This transfer is augmented by a careful checking of the original sources when available and the encoding of ancillary information (sample description, method of analysis...) not present in the NOAA-MMS database.This dataset represents the digitized Table 5, pp. C05-1 to C05-2 of Manheim, FT & Lane-Bostwick, CM (1989).
DOI: 10.1594/pangaea.963542
title: ADCP current measurements (38 and 75 kHz) during Maria S. Merian cruise MSM94

description: Two Teledyne RDI Ocean Surveyor systems with 38 and 75 kHz transmission frequency were used. Data was processed with a software package developed at GEOMAR following the GO-SHIP standards (Firing and Hummon, 2010). The data was subsequently averaged over one minute intervals and converted to a NetCDF based format.
DOI: 10.26179/p9j2-fh98
title: Aurora Australis Voyage 2 1993-94 Underway Data
DOI: 10.34740/kaggle/dsv/7716327
title: WallStreetBets 2022
DOI: 10.15468/9adphj
title: Suivi des tortues marines par le Centre d'Etudes et de Soins pour les Tortues Marines (CESTM) de l'Aquarium La Rochelle - Rapportage des données d’échouage

description: Les signalements de tortues marines sur la façade Manche-Atlantique sont transmis au CESTM de l'Aquarium La Rochelle qui coordonne et anime le Réseau Tortues Marines Atlantique Est notamment. Les individus signalés en détresse sont conduits au CESTM dont l'objectif est de réhabiliter les individus en vue de les réintroduire dans le milieu naturel.
DOI: 10.26179/q180-1z73
title: Aurora Australis Voyage 4 1993-94 Underway Data
DOI: 10.5519/qd.75fq4sth
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2744 records)
DOI: 10.15468/3hymhj
title: 2016_GCP_2

description: 2016_GCP_2:GCP:Plan Régional d'Actions Chiroptères
DOI: 10.15468/ww4rf3
title: Projet d'aménagement de la ZAC du Saut du Moine - MAMMIFERES - SETIS - DETECTION INDIRECTE

description: Inventaire des mammifères terrestres et des chiroptères.
DOI: 10.15468/cfjkn5
title: 2016_SMAVD_6

description: 2016_SMAVD-MANTOPTERES:SMAVD
DOI: 10.15468/f4kkuc
title: Edaphobase-Länderstudien

description: This dataset is part of Edaphobase. Edaphobase is a data warehouse that collects information from literature, museum collections and research data about the distribution and ecology of soil organisms (earthworms, potworms, nematodes, springtails, proturans, diplurans, moss/beetle mites, gamasina mites, centipedes, millipedes, woodlice, soil fungi and soil prokaryotes). You can discover the whole Edaphobase data here: https://portal.edaphobase.org/ To get more information about Edaphobase please go to: https://edaphobase.org/ Data ownersAndreas Toschki, Franz Horak, Henning Haase, Jörg-Alfred Salamon, Nadine Willius, Rüdiger M. Schmelz, SMNK Staatliches Museum für Naturkunde Karlsruhe, Susanne Miller, Svenja Luther Discover the datahttps://portal.edaphobase.org/?qxenv:action:gbif&qxenv:sources:238152
DOI: 10.15468/zsuh47
title: 2016_SMAVD_3

description: 2016_SMAVD-HETEROCERES:SMAVD
DOI: 10.15468/brc9am
title: Parc éolien de Sauveterre2 - Données Chiroptères - Sauveterre2

description: Parc éolien de 4 éoliennes de 82m de diamètre et 125 mètres de hauteur, et d'un poste de livraison, sur la commune de Sauveterre, en extension du parc éolien existant, aux lieux-dits La Foret, Pentho et Granie. Le projet a été déposé en autorisation unique et soumis à étude d'impacts
DOI: 10.15468/nbzesm
title: 2016_Parc National de Port Cros_2

description: 2016_PNPC_Isopodes:Parc National de Port Cros:Inventaires complémentaires des crustacés isopodes terrestres de la presquîle de Giens, des îles dHyères et des communes adjacentes du Parc national de Port-Cros (Partenariat scientifique n° 15-017 - 83400 PC)
DOI: 10.15468/px8tdb
title: 2016_LPO PACA_4

description: 2016_LPO-PACA_avifaune:LPO PACA
DOI: 10.15468/cxu36h
title: 2016_Parc Naturel Régional du Verdon_4

description: 2016_PNRV_amphibiens:Parc Naturel Régional du Verdon
DOI: 10.15468/z8rydt
title: ACQUISITION_CBNMC - GONNET_van Haluwyn_AFL_dec2015

description: GONNET_van Haluwyn_AFL_dec2015
DOI: 10.15468/ygf9fj
title: 2017_A ROCHA_1

description: 2017_AROCHA_Oiseaux:A ROCHA
DOI: 10.15468/3vaw84
title: 2016_Parc National du Mercantour_2

description: resultatsReqSpat_2016_PNM_rhopalo:Parc National du Mercantour
DOI: 10.15468/jfys6g
title: 2016_Réserve Naturelle de Camargue_1

description: 2015_RNNCamargue_mollusques:Réserve Naturelle de Camargue
DOI: 10.15468/vwodds
title: Système d'Information sur la Nature et les Paysages d'Ile de France - Suivi des chiroptères hibernant au sein des ENS de Seine-et-Marne

description: Jeux de données provenant de la base de données CETTIA du Système d'Information sur la Nature et les Paysages d'Ile de France. Il concerne la faune à l'exception des insectes.
DOI: 10.15468/qe5jee
title: 2016_SMAVD_8

description: 2016_SMAVD-ODONATES:SMAVD / données fournies par SMAVD en 2016
DOI: 10.15468/v4etes
title: 2016_Naturoptère_1

description: 2016_Naturoptere:Naturoptère
DOI: 10.6084/m9.figshare.24282592
title: Supplementary Information from "Marine introgressions and Andean uplift have driven diversification in neotropical Monkey tree frogs (Anura, Phyllomedusinae)"

description: The species richness in the Neotropics has been linked to environmental heterogeneity and a complex geological history. We evaluated which biogeographic processes were more associated with the diversification of Monkey tree frogs, an endemic clade from the Neotropics. We tested two competing hypotheses: the diversification of Phyllomedusinae occurred either in a "south-north" or a "north-south" direction in the Neotropics. We also hypothesized that marine introgressions and Andean uplift had a crucial role in promoting their diversification. We used 13 molecular markers in a Bayesian analysis to infer phylogenetic relationships among 57 species of Phyllomedusinae and to estimate their divergence times. We estimated ancestral ranges based on 12 biogeographic units considering the landscape modifications of the Neotropical region. We found that the Phyllomedusinae hypothetical ancestor range was probably widespread throughout South America, from Western Amazon to Southern Atlantic Forest, at 29.5 Mya. The Phyllomedusines' ancestor must have initially diverged through vicariance, generally followed by jump-dispersals and sympatric speciation. Dispersal among areas occurred mostly from Western Amazonia towards Northern Andes and the South American diagonal of dry landscapes, a divergent pattern from both "south-north" and "north-south" diversification hypotheses. Our results revealed a complex diversification process of Monkey tree frogs, occurring simultaneously with the orogeny of Northern Andes and the South American marine introgressions in the last 30 million years.
DOI: 10.6084/m9.figshare.24282592.v2
title: Supplementary Information from "Marine introgressions and Andean uplift have driven diversification in neotropical Monkey tree frogs (Anura, Phyllomedusinae)"

description: The species richness in the Neotropics has been linked to environmental heterogeneity and a complex geological history. We evaluated which biogeographic processes were more associated with the diversification of Monkey tree frogs, an endemic clade from the Neotropics. We tested two competing hypotheses: the diversification of Phyllomedusinae occurred either in a "south-north" or a "north-south" direction in the Neotropics. We also hypothesized that marine introgressions and Andean uplift had a crucial role in promoting their diversification. We used 13 molecular markers in a Bayesian analysis to infer phylogenetic relationships among 57 species of Phyllomedusinae and to estimate their divergence times. We estimated ancestral ranges based on 12 biogeographic units considering the landscape modifications of the Neotropical region. We found that the Phyllomedusinae hypothetical ancestor range was probably widespread throughout South America, from Western Amazon to Southern Atlantic Forest, at 29.5 Mya. The Phyllomedusines' ancestor must have initially diverged through vicariance, generally followed by jump-dispersals and sympatric speciation. Dispersal among areas occurred mostly from Western Amazonia towards Northern Andes and the South American diagonal of dry landscapes, a divergent pattern from both "south-north" and "north-south" diversification hypotheses. Our results revealed a complex diversification process of Monkey tree frogs, occurring simultaneously with the orogeny of Northern Andes and the South American marine introgressions in the last 30 million years.
DOI: 10.6084/m9.figshare.24282592.v1
title: Supplementary Information from "Marine introgressions and Andean uplift drives diversification in neotropical Monkey tree frogs (Anura, Phyllomedusinae)"

description: The species richness in Neotropics has been linked to environmental heterogeneity and a complex geological history. We evaluated which biogeographical processes were more associated with the diversification of Monkey tree frogs, an endemic clade from the Neotropics. We tested the hypothesis that the diversification of Phyllomedusinae occurred in a south-north direction in the Neotropics, and that marine introgressions and Andean uplift had a crucial role promoting their diversification. We used 13 molecular markers on a bayesian analysis to infer phylogenetic relationships among 57 species of Phyllomedusinae and to estimate their divergence times. We hypothesized the ancestral range based in 12 biogeographical units defined considering the distribution of the phyllomedusine species and potential biogeographical barriers. Ancestral range estimations were made by models implemented in BioGeoBEARS. We found that the Phyllomedusinae hypothetical ancestor range was probably widespread through the Neotropics, from Central America to Southern Atlantic Forest, at 38.6 Mya. Phyllomedusines' ancestors diverged mostly through vicariance during early stages of speciation, generally followed by jump-dispersals and speciation in sympatry. Dispersal among areas mostly occurred from Western Amazonia towards Northern Andes and the diagonal of dry landscapes, rejecting our south-north diversification hypothesis. Our results revealed a complex diversification of Monkey tree frogs, occurring simultaneously with the orogeny of Northern Andes and the South American marine introgressions in the last 30 million years.
DOI: 10.6084/m9.figshare.25282675.v1
title: Evaluation of the applicability of optical water index to different types of water

description: We evaluate the applicability of the absolute optical water index to different types of water bodies. The evaluation process for each type of water body is as follows: First,12 water body indexes are calculated using Landsat-8 and Sentinel-2 satellite images. In the second step, the K-means unsupervised classification method was used to classify the images, and the classification results were combined into two categories: water body and non-water body. The third step is to manually vectorize the true color image and evaluate the accuracy in ENVI.
DOI: 10.15468/fs46n9
title: Lichens of the Krasnokutsk territorial commune (hromada), Kharkiv region, Ukraine

description: The database contains records of lichen species collected within the Slobozhanskyi National Nature Park and its surrounding area. The Slobozhanskyi National Nature Park is situated in the northwestern part of the Kharkiv region, Ukraine. This park is a nationally significant natural reserve located within the territory of the Krasnokutsk territorial community. It was established in 2009 with the primary goal of conserving and restoring the unique natural systems of the Slobozhanshchyna region. The park's territory is part of the Emerald Network of Ukraine (UA0000075) and a component of the Galician-Slobozhanskyi Ecological Corridor of the Environmental Network of Ukraine. Data regarding lichen findings within the park have been published since 2006 in various scientific works, conference materials, and student theses. The majority of lichen samples collected within the park are stored in the herbarium of the V.N. Karazin Kharkiv National University (CWU). Some of these samples have been digitized using the PlutoF data management system and are already available on the Global Biodiversity Information Facility (GBIF).