cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6465914
title: Additional file 9: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S8. List of Hsfs and Hsps with their HS regulation at transcriptome and proteome level in pollen developmental stages. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.6465914.v1
title: Additional file 9: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S8. List of Hsfs and Hsps with their HS regulation at transcriptome and proteome level in pollen developmental stages. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.6465896
title: Additional file 8: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S7. List of proteins from “chaperones & protein turnover” and “translation & ribosomes” category that are differentially regulated in pollen developmental stages after HS. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6465896.v1
title: Additional file 8: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S7. List of proteins from “chaperones & protein turnover” and “translation & ribosomes” category that are differentially regulated in pollen developmental stages after HS. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6465890
title: Additional file 4: of Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates

description: Table S4. B. safensis F0-36b genes reported earlier as shared by B. pumilus SAFR-032 and not found in the B. pumilus ATCC7061T strain [38], compared with the B. safensis JPL-MERTA-8-2 strain, and the other B. pumilus / B. safensis genomes. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.6465890.v1
title: Additional file 4: of Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates

description: Table S4. B. safensis F0-36b genes reported earlier as shared by B. pumilus SAFR-032 and not found in the B. pumilus ATCC7061T strain [38], compared with the B. safensis JPL-MERTA-8-2 strain, and the other B. pumilus / B. safensis genomes. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.6465887
title: Additional file 2: of Multifactorial analysis of the stochastic epigenetic variability in cord blood confirmed an impact of common behavioral and environmental factors but not of in vitro conception

description: Table S1. Top 50 ranked hypomethylated or hypermethylated probes in babies born after ICSI. (XLS 41Â kb)
DOI: 10.6084/m9.figshare.6465887.v1
title: Additional file 2: of Multifactorial analysis of the stochastic epigenetic variability in cord blood confirmed an impact of common behavioral and environmental factors but not of in vitro conception

description: Table S1. Top 50 ranked hypomethylated or hypermethylated probes in babies born after ICSI. (XLS 41Â kb)
DOI: 10.6084/m9.figshare.6465881
title: Additional file 7: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S6. List of proteins down- and upregulated after HS in pollen developmental stages. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.6465881.v1
title: Additional file 7: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S6. List of proteins down- and upregulated after HS in pollen developmental stages. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.6465866
title: Additional file 3: of Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates

description: Table S3. B. safensis FO-36b characteristic genes (ORFs/genes that are absent from B. pumilus SAFR-032, B. pumilus ATCC7061T, and, B. safensis JPL-MERTA-8-2) and their occurrence (presence/absence) in the B. pumilus/B. safensis genomes available in the NCBI database. P: Present, A: Absent, *found on phage insertions. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.6465866.v1
title: Additional file 3: of Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates

description: Table S3. B. safensis FO-36b characteristic genes (ORFs/genes that are absent from B. pumilus SAFR-032, B. pumilus ATCC7061T, and, B. safensis JPL-MERTA-8-2) and their occurrence (presence/absence) in the B. pumilus/B. safensis genomes available in the NCBI database. P: Present, A: Absent, *found on phage insertions. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.6465860
title: Additional file 6: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S5. Transcriptomic and proteomic HS clusters and genes assigned to them. (XLSX 494 kb)
DOI: 10.6084/m9.figshare.6465860.v1
title: Additional file 6: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S5. Transcriptomic and proteomic HS clusters and genes assigned to them. (XLSX 494 kb)
DOI: 10.6084/m9.figshare.6465845
title: Additional file 5: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S4. List of genes showing direct and delayed translation in pollen developmental stages. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.6465845.v1
title: Additional file 5: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S4. List of genes showing direct and delayed translation in pollen developmental stages. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.6465836
title: Additional file 1: of Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates

description: Table S1. In silico DNA-DNA hybridization (DDH) values showing Genome-genome distance [50] relationship values for the genomes of various B. pumilus, B. safensis, B. altitudinis strains. The genomes of Geobacillus kaustophilus, and B. subtilis subsp. subtilis str. 168 serving as outliers in the Firmicutes group and that of gram-negative E.coli MG1655, as a non-Firmicutes outlier. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.6465830
title: Additional file 4: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S3. Functional categories observed in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6465830.v1
title: Additional file 4: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S3. Functional categories observed in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6465818
title: Additional file 3: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S2. Transcriptomic and proteomic development clusters and genes assigned to them. (XLSX 372 kb)
DOI: 10.6084/m9.figshare.6465818.v1
title: Additional file 3: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S2. Transcriptomic and proteomic development clusters and genes assigned to them. (XLSX 372 kb)
DOI: 10.6084/m9.figshare.6465803
title: Additional file 2: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S1. Number of detected transcripts and protein groups in MACE and LC-MS/MS experiments for the biological replicates of pollen in tetrad, post-meiotic and mature stage under CO and HS. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6465803.v1
title: Additional file 2: of The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

description: Table S1. Number of detected transcripts and protein groups in MACE and LC-MS/MS experiments for the biological replicates of pollen in tetrad, post-meiotic and mature stage under CO and HS. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6465800
title: MOESM2 of CREBBP/EP300 bromodomains are critical to sustain the GATA1/MYC regulatory axis in proliferation

description: Additional file 2: Table S2. Genes downregulated by the indicated treatments. Presence of super-enhancers and top EP300 occupancy is also indicated.
DOI: 10.6084/m9.figshare.6465800.v1
title: MOESM2 of CREBBP/EP300 bromodomains are critical to sustain the GATA1/MYC regulatory axis in proliferation

description: Additional file 2: Table S2. Genes downregulated by the indicated treatments. Presence of super-enhancers and top EP300 occupancy is also indicated.
DOI: 10.5517/ccdc.csd.cc2d4q3d
title: CCDC 2209063: Experimental Crystal Structure Determination

description: Related Article: Xiang Wang|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17909/9rjd-2819
title: COS data for dwarf AGN
DOI: 10.25345/c5xd0r80q
title: MassIVE MSV000093578 - Interactions between sea snails and trematodes: analysis of metabolomes
title: This work is devoted to the analysis of parasite-host interactions at the metabolome level. We analyzed the metabolome of two species of molluscs, Littorina saxatilis and L. obtusata, healthy and infected with trematodes Microphallus pygmaeus. For analysis of the mollusc metabolome, snail soft tissues (without hepatopancreas and operculum) were separated and fixed individually in 100% methanol. Five to eight biological replicates per each group of comparison were collected (53 samples in total). To analyse the parasite metabolome, we used daughter sporocysts with metacercariae of M. pygmaeus purified from host tissues in filtered sea water (0.2 mkm filters, Merck). Parasite tissues were fixed in 100% methanol. Six to eight biological replicates per each group of comparison were collected (28 samples in total). The prepared material was fixed and then frozen initially at -20oC and later at -80oC until use. Metabolomic data were obtained using nontargeted GC-MS (gas-chromatography mass spectrometry)-based profiling of the trimethylsilyl derivatives. Shortly: the frozen tissues were homogenised, centrifuged, afterwards the supernatants were vacuum-dried and dissolved in pyridine (Merck) containing 1 mg/ml of an internal standard (nC23, Sigma-Aldrich). The silylation agent (N,O-bis(trimethylsilyl)-trifluoroacetamide with 1% trimethylsilyl chloride, Sigma-Aldrich) was added to each sample before the analysis. The analysis was carried out on a gas chromatograph with a time-of-flight mass spectrometer Pegasus 4D GCxGC-TOF MS (Leco). Chromatographic separation was performed in Zorbax DB-5 columns ((5%-phenyl)-methylpolysiloxane; length 30 m, inner diameter 0.25 mm, film thickness 0.25 mkm; Agilent Technologies). Analysis method: evaporator temperature 250oC; starting temperature 70oC; gradient 6oC/min; final temperature 320oC; helium carrier gas, flow rate 1 ml/min. Mass spectrometry: detection frequency 10 spectra/sec in the mass range 50-800Da.
DOI: 10.25439/rmt.19743172
title: 4.1 Supplementary Table 4.1. ITS1 Nails.pdf

description: Dataset ITS1 Nails
DOI: 10.25439/rmt.19743172.v1
title: 4.1 Supplementary Table 4.1. ITS1 Nails.pdf

description: Dataset ITS1 Nails
DOI: 10.25439/rmt.13315355
title: Data - Examining the relationship between grit, flow, and meditation to develop positive leaders - PhD thesis

description: This data contains the raw as well as the initial analysis made of each participant. This data was collected for the PhD project and was used to write 4 articles. The data was used to develop two assessment tools other than develop a theory
DOI: 10.25439/rmt.13315355.v1
title: Data - Examining the relationship between grit, flow, and meditation to develop positive leaders - PhD thesis

description: This data contains the raw as well as the initial analysis made of each participant. This data was collected for the PhD project and was used to write 4 articles. The data was used to develop two assessment tools other than develop a theory
DOI: 10.18434/mds2-3112
title: Drop-on-Demand Dispensing for Point-of-Care Pharmaceutical Manufacturing of Narrow Therapeutic Index Drugs
DOI: 10.6084/m9.figshare.24647448
title: Urban environmental exposures during the first 2000 days of life as a foundation for health across the life-course: a scoping review

description: ObjectivesBy 2030, 60% of the global population is expected to live in urban areas. Exposure to urban environments during the first 2000 days of life can have positive or negative health outcomes across the life course. Understanding the types of urban exposures that influence health outcomes is needed to guide research priorities for public health and urban planning. This review aimed to summarise the published research examining the health outcomes of all urban environmental exposures during the first 2000 days of life, identify the quantity and characteristics of research in this area, methods used, and knowledge gaps..Methods A scoping review using the JBI methodology for scoping reviews was conducted. Eight databases were searched for peer-reviewed primary studies. Inclusion criteria were studies that measured maternal, infant and child exposure to everyday urban environment features and conditions in cities/metropolitan areas during the first 2000 days of life and reported offspring health outcomes across the life course including embryo, fetal/newborn, infant, child, adolescent, and adult outcomes. We used Covidence software for data screening and extraction. Study characteristics and findings were summarised using tables and narrative synthesis.Results We reviewed 235 articles, which included studies conducted across 38 countries; the majority in the USA (n = 62). A broad range of environmental exposures were studied, spanning 7 categories: air pollution, energy-based pollution, atmosphere, chemical and metal exposure, neighbourhood-built and natural environment features, neighbourhood community conditions, and residential living conditions. Air pollution was the most studied exposure type (n = 154 studies). Health outcomes were reported for all life stages except adults, with fetal/newborn outcomes most studied (n = 133).Conclusions We found that most research investigating urban environmental exposures and health outcomes across the life course focused on air pollution exposures and fetal/newborn health outcomes using correlational retrospective cohort designs. Few studies included multiple environmental exposures. There is a clear need for more longitudinal research to determine the health impacts from multiple urban environmental exposures across the life course. This will assist in developing strategies for urban design and planning and population health to mitigate health risks across the life course.
DOI: 10.6084/m9.figshare.24647448.v1
title: Urban environmental exposures during the first 2000 days of life as a foundation for health across the life-course: a scoping review

description: ObjectivesBy 2030, 60% of the global population is expected to live in urban areas. Exposure to urban environments during the first 2000 days of life can have positive or negative health outcomes across the life course. Understanding the types of urban exposures that influence health outcomes is needed to guide research priorities for public health and urban planning. This review aimed to summarise the published research examining the health outcomes of all urban environmental exposures during the first 2000 days of life, identify the quantity and characteristics of research in this area, methods used, and knowledge gaps..Methods A scoping review using the JBI methodology for scoping reviews was conducted. Eight databases were searched for peer-reviewed primary studies. Inclusion criteria were studies that measured maternal, infant and child exposure to everyday urban environment features and conditions in cities/metropolitan areas during the first 2000 days of life and reported offspring health outcomes across the life course including embryo, fetal/newborn, infant, child, adolescent, and adult outcomes. We used Covidence software for data screening and extraction. Study characteristics and findings were summarised using tables and narrative synthesis.Results We reviewed 235 articles, which included studies conducted across 38 countries; the majority in the USA (n = 62). A broad range of environmental exposures were studied, spanning 7 categories: air pollution, energy-based pollution, atmosphere, chemical and metal exposure, neighbourhood-built and natural environment features, neighbourhood community conditions, and residential living conditions. Air pollution was the most studied exposure type (n = 154 studies). Health outcomes were reported for all life stages except adults, with fetal/newborn outcomes most studied (n = 133).Conclusions We found that most research investigating urban environmental exposures and health outcomes across the life course focused on air pollution exposures and fetal/newborn health outcomes using correlational retrospective cohort designs. Few studies included multiple environmental exposures. There is a clear need for more longitudinal research to determine the health impacts from multiple urban environmental exposures across the life course. This will assist in developing strategies for urban design and planning and population health to mitigate health risks across the life course.
DOI: 10.13020/1dap-6d14
title: Data and code supporting: Exposure to risk factors experienced during migration is not associated with recent Vermivora warbler population trends

description: Data and code supporting the publication "Exposure to risk-factors experienced during migration is not associated with recent Vermivora warbler population trends".
DOI: 10.26300/nw9d-1k81
title: Federal Policies' Impact on Exclusionary Diagnoses for Dementia Residents in Nursing Homes
DOI: 10.5281/zenodo.10253518
title: 5 m Simulations dataset

description: Unzip into directories UW_data and Sim_3. Contains all data
DOI: 10.5281/zenodo.10253519
title: 5 m Simulations dataset

description: Unzip into directories UW_data and Sim_3. Contains all data
DOI: 10.25952/d9yc-qe59
title: Ecology of some of the major Trichostrongylid parasites of sheep

description: The dataset contains data on the dynamics of faecal water content (FWC) and the dynamics of the free-living stages of Trichostrongylus vitrinus, Trichostrongylus colubriformis and Teladorsagia circumcincta. FWC DATA file presents the data on dynamics of faecal water content recorded each day. Worksheet DRYING presents FWC dynamics when no water was added. Worksheet WATER presents FWC dynamics with constant volume of water addition. Data files TCOLDATA, TELADATA and TVDATA present the different free-living stages of nematode life cycle: eggs, pre-infective larvae, intra-pellet infective larvae and extra-pellet infective larvae. The average daily temperatures and FWC recorded are also included (worksheet COUNTS). Worksheets SHELFWISE in each data file present the average of three-replicate counts from each shelf every day. This average count was calculated to counts per gram of dry matter (faeces) to account for differences in FWC arising in different experimental units.
description: The dataset contains data on the dynamics of faecal water content (FWC) and the dynamics of the free-living stages of Trichostrongylus vitrinus, Trichostrongylus colubriformis and Teladorsagia circumcincta. FWC DATA file presents the data on dynamics of faecal water content recorded each day. Worksheet DRYING presents FWC dynamics when no water was added. Worksheet WATER presents FWC dynamics with constant volume of water addition. Data files TCOLDATA, TELADATA and TVDATA present the different free-living stages of nematode life cycle: eggs, pre-infective larvae, intra-pellet infective larvae and extra-pellet infective larvae. The average daily temperatures and FWC recorded are also included (worksheet COUNTS). Worksheets SHELFWISE in each data file present the average of three-replicate counts from each shelf every day. This average count was calculated to counts per gram of dry matter (faeces) to account for differences in FWC arising in different experimental units.
DOI: 10.5517/ccdc.csd.cc2g0l36
title: CCDC 2264677: Experimental Crystal Structure Determination

description: Related Article: Wahiba Falek, Rim Benali-Cherif, Radhwane Takouachet,  Sonia Baaziz, El-Eulmi Bendeif, Nourredine Benali-Cherif|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g15c2
title: CCDC 2265243: Experimental Crystal Structure Determination

description: Related Article: Di Chao, Tong-Xin Liu, Pengling Zhang, Shilu Xia, Guisheng Zhang|2023|J.Org.Chem.|88|13076|doi:10.1021/acs.joc.3c01291
description: Related Article: Di Chao, Tongxin Liu, Pengling Zhang, Shilu Xia, Guisheng Zhang|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g5z2q
title: CCDC 2269853: Experimental Crystal Structure Determination

description: Related Article: Mirosław Mączka, Dawid Drozdowski, Dagmara Stefańska, Anna Gągor|2023|Inorg.Chem.Front.|10|7222|doi:10.1039/D3QI01749D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g5z3r
title: CCDC 2269854: Experimental Crystal Structure Determination

description: Related Article: Mirosław Mączka, Dawid Drozdowski, Dagmara Stefańska, Anna Gągor|2023|Inorg.Chem.Front.|10|7222|doi:10.1039/D3QI01749D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g5z4s
title: CCDC 2269855: Experimental Crystal Structure Determination

description: Related Article: Mirosław Mączka, Dawid Drozdowski, Dagmara Stefańska, Anna Gągor|2023|Inorg.Chem.Front.|10|7222|doi:10.1039/D3QI01749D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.