cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25326/579
title: IWV_GNSS - MAP-IO - STATION LEVEL 2 FL

description: The objective of the MAP-IO program is to assess the feasibility of building an atmospheric and marine biology observatory on board the Marion Dufresne. This observatory aims to carry out atmospheric observations at the ocean-atmosphere interface and integrated on the atmospheric column over the entire globe with a focus of particular interest for the study of the Indian and Southern Oceans. The MAP-IO program is positioned in an observatory logic with four main objectives; (i) integration into international atmospheric and oceanic networks by providing high quality data on a region devoid of permanent observation, (ii) validating and calibrating space sensors and numerical weather forecasting models, (iii) monitoring global changes on the Indian and Southern Ocean and (iv) observation of atmospheric and biology phytoplankton variability over the Indian and Southern Oceans.

MAP-IO takes advantage of the scientific campaigns at sea planned by the FOF by exploring different poorly documented ocean areas and by increasing and completing the observation systems of the programs with additional measurements. The differentiation value of MAP-IO versus conventional scientific programs at sea, and that it relies on the regular rotations of the TAAFs by documenting the atmosphere and the ocean surface state over a wide variability of sea ​​and latitude conditions. These multi-year observations of the Indian and Southern Oceans make it possible to uniquely document the trends, the mechanisms of ocean-atmosphere exchanges and the atmospheric composition on a seasonal and interannual basis.

IWV (Integrated Water Vapor) contents are retrieved using Global Navigation Satellite Systems (GNSS) data acquired from R/V Marion Dufresne. ZTD (Zenith Troposphere Delays) are produced with Gipsy-Oasis II v6.4 software using GPS observations. The ZTD data (one estimate every 30 seconds) are converted to IWV using on-board pressure measurement and integrated mean temperature (Tm) computed from surface temperature measurement and Bevis's formula. More information about the post-processing can be found in Bosser et al., 2022, https://doi.org/10.3390/atmos13060903.

A post-processing filtering is applied to this dataset for outliers mitigation.

STATION LEVEL 2 FL (First-Look) corresponds to data at native time resolution validated by the PI.

This dataset is organized as follows:

```yyyy doy ZTD ZHD Tm IWV SIG_ZTD SIG_IWV```

with:
- `yyyy`: year
- `doy`: decimal day-of-year
- `ZTD` (m): Zenith Troposphere Delay estimates from the GNSS analysis
- `ZHD` (m): Zenith Hydrostatic Delay evaluated from on-board pressure measurement
- `Tm` (K): integrated mean temperature evaluated from on-board temperature measurement and Bevis's formula
- `IWV` (kg/m2): Integrated Water Vapor content
- `SIG_ZTD` (m): formal error on ZTD
- `SIG_IWV` (kg/m2): formal error on IWV
DOI: 10.15468/dl.68s5hh
title: Occurrence Download

description: A dataset containing 18590 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The New York Botanical Garden Herbarium (NY)",
 "Country is Australia"
 ]
}

 The dataset includes 18590 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031177-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ub4he
title: Occurrence Download

description: A dataset containing 208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kareius bicoloratus (Basilewsky, 1855)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 208 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031179-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9w3v3
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anguina tritici (Steinbuch, 1799) Filipjev, 1936)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031181-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mfjdug
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Eswatini, Lesotho)",
 "OccurrenceStatus is Present",
 "TaxonKey is Alcelaphus buselaphus caama (É.Geoffroy Saint-Hilaire, 1803)"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031183-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ww5tuy
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platichthys bicoloratus (Basilewsky, 1855)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 81 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031185-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76c4ec
title: Occurrence Download

description: A dataset containing 16966 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Tropicos Specimens Non-MO",
 "Country is Australia"
 ]
}

 The dataset includes 16966 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031182-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rcz26z
title: Occurrence Download

description: A dataset containing 10651 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-90.27241 -0.41268,-90.27685 -0.40999,-90.28333 -0.41242,-90.29093 -0.41343,-90.29548 -0.41343,-90.29518 -0.41707,-90.2891 -0.4191,-90.28688 -0.42406,-90.2885 -0.42902,-90.29336 -0.43206,-90.29032 -0.43702,-90.28748 -0.43813,-90.28263 -0.436,-90.28151 -0.44005,-90.28546 -0.444,-90.29062 -0.44724,-90.2969 -0.45524,-90.29913 -0.46637,-90.29994 -0.47407,-90.29852 -0.47953,-90.29386 -0.4849,-90.28232 -0.485,-90.27513 -0.48297,-90.26643 -0.48136,-90.24413 -0.46265,-90.24751 -0.45462,-90.26229 -0.43501,-90.27241 -0.41268))"
 ]
}

 The dataset includes 10651 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031184-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uumch7
title: Occurrence Download

description: A dataset containing 59282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The Retrospective Analysis of Antarctic Tracking (Standardised) Data from the Scientific Committee on Antarctic Research",
 "Country is Australia"
 ]
}

 The dataset includes 59282 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031180-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6j4vx3
title: Occurrence Download

description: A dataset containing 15899 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-90.27578 -0.39049,-90.27666 -0.38967,-90.28091 -0.38889,-90.2847 -0.38895,-90.28773 -0.38911,-90.29074 -0.38986,-90.2928 -0.39199,-90.29311 -0.3959,-90.29383 -0.39943,-90.29208 -0.40247,-90.28989 -0.4015,-90.28423 -0.40053,-90.27628 -0.398,-90.27422 -0.39412,-90.27578 -0.39049))"
 ]
}

 The dataset includes 15899 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031186-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rjuh4
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anomala sulcatula Burmeister, 1844)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 84 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031188-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mhmjd
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neosalangichthys ishikawae (Wakiya & Takahashi, 1913)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031189-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zz8mkk
title: Occurrence Download

description: A dataset containing 18628 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is UF Invertebrate Zoology",
 "Country is Australia"
 ]
}

 The dataset includes 18628 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031187-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ns9etd
title: Occurrence Download

description: A dataset containing 1465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Trapa natans var. bispinosa (Roxb.) Makino"
 ]
}

 The dataset includes 1465 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031190-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4esrz3
title: Occurrence Download

description: A dataset containing 61045 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Vulnerable marine ecosystems in the South Pacific Ocean region",
 "Country is Australia"
 ]
}

 The dataset includes 61045 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031191-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqnzb6
title: Occurrence Download

description: A dataset containing 460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oplegnathus fasciatus (Temminck & Schlegel, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 460 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031193-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxhsrr
title: Occurrence Download

description: A dataset containing 24986 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arion vulgaris Moquin-Tandon, 1855)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24986 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031194-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27988343.v1
title: <b>Long-Term Non-skeletal Complications in Patients with Thyroid Cancer </b><b>with Hypoparathyroidism Following Total Thyroidectomy: A Retrospective Nationwide Cohort Study</b>

description: The definition of the diseaseSupplementary Table 1. Baseline characteristics by presence or absence of hypoparathyroidism in thyroid cancer patientsSupplemental Table 2. Incidence rate of non-skeletal outcomes and hazard ratios for thyroid cancer patients with postsurgical hypoparathyroidism and matched control groupSupplementary Table 3. Incidence rate of non-skeletal outcomes and hazard ratios for patients without hypoparathyroidism and matched control groupSupplementary Table 4. Comparison of the incidence rate and hazard ratio of non-skeletal outcomes according to the presence or absence of hypoparathyroidism in thyroid cancer patientsSupplementary Table 5. Risk of renal outcomes and cataract by age and gender
DOI: 10.48544/315395dd-f2e2-43b4-b768-901e5a95c947
title: The best grammar control? Use AI wisely
DOI: 10.15468/dl.4ysk8y
title: Occurrence Download

description: A dataset containing 439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Paeonia broteri Boiss. & Reut."
 ]
}

 The dataset includes 439 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031197-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhjv4t
title: Occurrence Download

description: A dataset containing 2791 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-90.37155 -0.41848,-90.37245 -0.41858,-90.37394 -0.4188,-90.37459 -0.42078,-90.37491 -0.42212,-90.37401 -0.42452,-90.37342 -0.42579,-90.37152 -0.42607,-90.36991 -0.42596,-90.36902 -0.42447,-90.36926 -0.42259,-90.36932 -0.41957,-90.37155 -0.41848))"
 ]
}

 The dataset includes 2791 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031195-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.626z5t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scaradon fasciatus Temminck & Schlegel, 1844",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031198-241126133413365/datasets/export for details.
DOI: 10.15468/dl.unumjw
title: Occurrence Download

description: A dataset containing 581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Paeonia broteroi Boiss. & Reut."
 ]
}

 The dataset includes 581 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031196-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.2623485
title: S10 | SWISSPHARMA | Pharmaceutical List with Consumption Data

description: This is the collection associated with list S10 SWISSPHARMA on the NORMAN Suspect List Exchange. https://www.norman-network.com/nds/SLE/ S10 | SWISSPHARMA | <strong>Pharmaceutical List with Consumption Data</strong> Swiss Pharma CSV, XLSX (3/10/2017) CompTox SWISSPHARMA List Pharma MS-ready InChIKeys (02/05/2017) Table S2 from Singer <em>et al.</em> 2016.<br> DOI: 10.1021/acs.est.5b03332
description: For more author details see related publication: DOI: 10.1021/acs.est.5b03332
DOI: 10.15468/dl.kqcewj
title: Occurrence Download

description: A dataset containing 2593837 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is 2023 Contributions of Plant Specimen Data inside China"
 ]
}

 The dataset includes 2593837 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031178-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11453104
title: MOVARSim presets

description: This page contains cancer-specific presets derived from COSMIC and TCGA to inform MOVARSim's parameters for 21 cancer types.

The presets contain the information needed to derive realistic and cancer-specific values for the characteristics of variants (total number of variants per sample, number of variants per type, variants zigosity, variants lengths, variants positions) which are specified in the main input format of MOVARSim, i.e. the VAR file. 

Files are named using the following format: <database_name>_mutations_workspace_<tumor_type>.RData.

- <database_name> can be either "cosmic_core" or "tgca".

- <tumor_type> can be: "adrenal_gland", "biliary_tract","bone", "cervix", "eye", "kidney", "liver", "esophagus", "ovary", "pancreas", "pleura", "prostate", "skin", "soft_tissue", "stomach", "testis", "thymus", "thyroid".
DOI: 10.5281/zenodo.11453103
title: MOVARSim presets (raw data)

description: This page contains the raw data, downloaded from COSMIC and TCGA, for constructing  the cancer-specific presets that inform MOVARSim simulator.

From COSMIC, we downloaded Mutation Data (Genome Screens) (https://cancer.sanger.ac.uk/cosmic/download/cosmic/v99/mutantcensus) in CSV format. Such CSV was filtered using the "PRIMARY_SITE" column to obtain one CSV file ("V99_38_MUTANT_<tumour_type>.csv") for each cancer type: “breast”, “lung”, “colon”, “adrenal_gland”, “biliary_tract”, “bone”, “cervix”, “eye”, “kidney”, “liver”, “oesophagus”, “ovary”, “pancreas”, “pleura”, “prostate”, “skin”, “soft_tissue”, “stomach”, “testis”, “thymus”, “thyroid”.

To access TCGA data, we used the GDC Data Portal (https://portal.gdc.cancer.gov/analysis_page?app=Downloads).We filtered the whole repository with the following options: - Data Category: simple nucleotide variation;- Experimental Strategy: WXS;- Data Format: maf; - Access: open.At this stage, the repository contained MAF files for various samples, each containing aggregated and filtered WES mutation calls (i.e., Tier 3 data) from different variant calling pipelines applied to tumor-normal pairs. We further filtered the repository per cancer type (PRIMARY SITE should alternatively equal “breast”, “lung”, “colon”, “adrenal gland”, “bile duct”, “bone”, “cervix”, “eye”, “kidney”, “liver”, “esophagus”, “ovary”, “pancreas”, “pleura”, “prostate”, “skin”, “soft tissue”, “stomach”, “testis”, “thymus”, “thyroid”). Finally, for each cancer type, we downloaded the MAF files corresponding to different samples and concatenated them into a single file ("merged_<tumour_type>.maf").
DOI: 10.5281/zenodo.11458637
title: MOVARSim presets (raw data)

description: This page contains the raw data, downloaded from COSMIC and TCGA, for constructing  the cancer-specific presets that inform MOVARSim simulator.

From COSMIC, we downloaded Mutation Data (Genome Screens) (https://cancer.sanger.ac.uk/cosmic/download/cosmic/v99/mutantcensus) in CSV format. Such CSV was filtered using the "PRIMARY_SITE" column to obtain one CSV file ("V99_38_MUTANT_<tumour_type>.csv") for each cancer type: “breast”, “lung”, “colon”, “adrenal_gland”, “biliary_tract”, “bone”, “cervix”, “eye”, “kidney”, “liver”, “oesophagus”, “ovary”, “pancreas”, “pleura”, “prostate”, “skin”, “soft_tissue”, “stomach”, “testis”, “thymus”, “thyroid”.

To access TCGA data, we used the GDC Data Portal (https://portal.gdc.cancer.gov/analysis_page?app=Downloads).We filtered the whole repository with the following options: - Data Category: simple nucleotide variation;- Experimental Strategy: WXS;- Data Format: maf; - Access: open.At this stage, the repository contained MAF files for various samples, each containing aggregated and filtered WES mutation calls (i.e., Tier 3 data) from different variant calling pipelines applied to tumor-normal pairs. We further filtered the repository per cancer type (PRIMARY SITE should alternatively equal “breast”, “lung”, “colon”, “adrenal gland”, “bile duct”, “bone”, “cervix”, “eye”, “kidney”, “liver”, “esophagus”, “ovary”, “pancreas”, “pleura”, “prostate”, “skin”, “soft tissue”, “stomach”, “testis”, “thymus”, “thyroid”). Finally, for each cancer type, we downloaded the MAF files corresponding to different samples and concatenated them into a single file ("merged_<tumour_type>.maf").
DOI: 10.15468/dl.kck5wx
title: Occurrence Download

description: A dataset containing 505 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Viola hispida Lam."
 ]
}

 The dataset includes 505 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031199-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bahrr
title: Occurrence Download

description: A dataset containing 1721 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bactericera cockerelli (Šulc, 1909))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1721 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031200-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmxbqk
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panulirus japonicus (Von Siebold, 1824)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 77 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031201-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.