cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12700255
title: ReMIND2Reg dataset (2023)

description: Official training and validation sets of ReMIND2Reg 2024.

The goal of the ReMIND2Reg dataset is to address the registration problem of multi-parametric pre-operative MRI and intra-operative 3D ultrasound (iUS) images. Specifically, we focus on the challenging problem of pre-operative to post-resection registration, requiring the estimation of large deformations and tissue resections. Preoperative MRI comprises two structural MRI sequences: contrast-enhanced T1-weighted (ceT1) and native T2-weighted (T2). However, not all sequences are available for all cases. For this reason, developed methods must have the flexibility to leverage incomplete data sets at inference time. 

The released data corresponds to a modified (pre-processed) subset of the Brain Resection Multimodal Imaging Database (ReMIND) from The Cancer Imaging Archive, released with a CC BY 4.0 license, which contains pre- and intra-operative data collected on 114 consecutive patients who were surgically treated with image-guided tumor resection between 2018 and 2022: https://doi.org/10.7937/3rag-d070.

For each patient, 3D intraoperative ultrasound data reconstructed from tracked 2D sweep were acquired during brain surgery after substantial tumor resection was completed to the degree that either the surgeon was satisfied with the microscopically-visible extent of resection or to identify the remaining portion of the tumor (_0000.nii.gz). Before surgery, contrast-enhanced T1 (ceT1) MR scans (_0001.nii.gz) and/or T2-SPACE (_0002.nii.gz) were acquired to identify the surgical target. 

The task is to find one solution for the registration of two pairs of images per patient:1. 3D post-resection iUS and ceT12. 3D post-resection iUS and T2

The two main challenges are the significant variations in intensity distribution and local information between two imaging modalities (iUS and MR) and the estimation of large deformations with topological changes due to tissue resections . 

The released dataset includes training images of 99 patients with 99 3D iUS, 93 ceT1, and 62 T2, and validation images of 5 patients with 5 3D US, 5 ceT1, and 5 T2. The images are paired as described above with two image pairs per patient, resulting in 1585image pairs for training and 10 image pairs for validation. 

For details on the image acquisition (scanner details, etc.), please see https://doi.org/10.1101/2023.09.14.23295596.

All images are converted to NIfTI. When more than one pre-operative MR sequence was available, ceT1 was affinely co-registered to the T2 using NiftyReg; Ultrasound images were resampled in the pre-operative MR space. Images were cropped in the field of view of the iUS in an image size of 256x256x256 with a spacing of 0.5x0.5x0.5mm.

 

Data citation:Juvekar, P., Dorent, R., Kögl, F., Torio, E., Barr, C., Rigolo, L., Galvin, C., Jowkar, N., Kazi, A., Haouchine, N., Cheema, H., Navab, N., Pieper, S., Wells, W. M., Bi, W. L., Golby, A., Frisken, S., & Kapur, T. (2023). The Brain Resection Multimodal Imaging Database (ReMIND) (Version 1) [dataset]. The Cancer Imaging Archive. https://doi.org/10.7937/3rag-d070.
DOI: 10.5281/zenodo.12700312
title: ReMIND2Reg dataset (2023)

description: Official training and validation sets of ReMIND2Reg 2024.

The goal of the ReMIND2Reg dataset is to address the registration problem of multi-parametric pre-operative MRI and intra-operative 3D ultrasound (iUS) images. Specifically, we focus on the challenging problem of pre-operative to post-resection registration, requiring the estimation of large deformations and tissue resections. Preoperative MRI comprises two structural MRI sequences: contrast-enhanced T1-weighted (ceT1) and native T2-weighted (T2). However, not all sequences are available for all cases. For this reason, developed methods must have the flexibility to leverage incomplete data sets at inference time. 

The released data corresponds to a modified (pre-processed) subset of the Brain Resection Multimodal Imaging Database (ReMIND) from The Cancer Imaging Archive, released with a CC BY 4.0 license, which contains pre- and intra-operative data collected on 114 consecutive patients who were surgically treated with image-guided tumor resection between 2018 and 2022: https://doi.org/10.7937/3rag-d070.

For each patient, 3D intraoperative ultrasound data reconstructed from tracked 2D sweep were acquired during brain surgery after substantial tumor resection was completed to the degree that either the surgeon was satisfied with the microscopically-visible extent of resection or to identify the remaining portion of the tumor (_0000.nii.gz). Before surgery, contrast-enhanced T1 (ceT1) MR scans (_0001.nii.gz) and/or T2-SPACE (_0002.nii.gz) were acquired to identify the surgical target. 

The task is to find one solution for the registration of two pairs of images per patient:1. 3D post-resection iUS and ceT12. 3D post-resection iUS and T2

The two main challenges are the significant variations in intensity distribution and local information between two imaging modalities (iUS and MR) and the estimation of large deformations with topological changes due to tissue resections . 

The released dataset includes training images of 99 patients with 99 3D iUS, 93 ceT1, and 62 T2, and validation images of 5 patients with 5 3D US, 5 ceT1, and 5 T2. The images are paired as described above with two image pairs per patient, resulting in 1585image pairs for training and 10 image pairs for validation. 

For details on the image acquisition (scanner details, etc.), please see https://doi.org/10.1101/2023.09.14.23295596.

All images are converted to NIfTI. When more than one pre-operative MR sequence was available, ceT1 was affinely co-registered to the T2 using NiftyReg; Ultrasound images were resampled in the pre-operative MR space. Images were cropped in the field of view of the iUS in an image size of 256x256x256 with a spacing of 0.5x0.5x0.5mm.

 

Data citation:Juvekar, P., Dorent, R., Kögl, F., Torio, E., Barr, C., Rigolo, L., Galvin, C., Jowkar, N., Kazi, A., Haouchine, N., Cheema, H., Navab, N., Pieper, S., Wells, W. M., Bi, W. L., Golby, A., Frisken, S., & Kapur, T. (2023). The Brain Resection Multimodal Imaging Database (ReMIND) (Version 1) [dataset]. The Cancer Imaging Archive. https://doi.org/10.7937/3rag-d070.
DOI: 10.15468/dl.8q8zkp
title: Occurrence Download

description: A dataset containing 6059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Gyrinophilus porphyriticus (Green, 1827))"
 ]
}

 The dataset includes 6059 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018234-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8915518
title: Daily Public Opinion on Israel-Palestine War
DOI: 10.5523/bris.1vzv31fd26bvv2w8grbbmonrlt
title: Correlating molecular precursor interactions with device performance in solution-processed Cu2ZnSn(S,Se)4 thin-film solar cells

description: Investigation of the performance of CZTSSe thin film as solar absorber as a function of the precursor solution composition
DOI: 10.5517/ccdc.csd.cc2fky76
title: CCDC 2251568: Experimental Crystal Structure Determination

description: Related Article: Kazuma Kurokawa, Naoki Ogawa, Yusuke Kuroda, Yousuke Yamaoka, Hiroshi Takikawa, Kazunori Tsubaki, Kiyosei Takasu|2024|Org.Biomol.Chem.|22|5306|doi:10.1039/D4OB00750F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gntb9
title: CCDC 2284121: Experimental Crystal Structure Determination

description: Related Article: Arnab Mandal, Satyajit Singh, Arisha Arora, Sujisha S. Nambiar, Siddhartha S. Ghosh, Abu Taleb Khan|2024|Org.Biomol.Chem.|22|5333|doi:10.1039/D4OB00509K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gntkj
title: CCDC 2284128: Experimental Crystal Structure Determination

description: Related Article: Arnab Mandal, Satyajit Singh, Arisha Arora, Sujisha S. Nambiar, Siddhartha S. Ghosh, Abu Taleb Khan|2024|Org.Biomol.Chem.|22|5333|doi:10.1039/D4OB00509K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hjlc0
title: CCDC 2309852: Experimental Crystal Structure Determination

description: Related Article: Ruyi Li, Huaqin Wu, Hang Liu, Junjie Bai, Zao Zhang, Muyang Zhu, Pengcheng Lian, Xiaobing Wan|2024|Org.Chem.Front.|11|3881|doi:10.1039/D4QO00502C
description: Related Article: Ruyi Li, Huaqin Wu, Hang Liu, Junjie Bai, Zao Zhang, Muyang Zhu, Pengcheng Lian, Xiaobing Wan|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hy3vf
title: CCDC 2321895: Experimental Crystal Structure Determination

description: Related Article: Lei Zhou, Kailei Li, Yuanyuan Chang, Yuan Yao, Yuqi Peng, Ming Li, Rongxing He|2024|Chemical Science|15|10046|doi:10.1039/D4SC01630K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hy3wg
title: CCDC 2321896: Experimental Crystal Structure Determination

description: Related Article: Lei Zhou, Kailei Li, Yuanyuan Chang, Yuan Yao, Yuqi Peng, Ming Li, Rongxing He|2024|Chemical Science|15|10046|doi:10.1039/D4SC01630K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hy3rb
title: CCDC 2321892: Experimental Crystal Structure Determination

description: Related Article: Lei Zhou, Kailei Li, Yuanyuan Chang, Yuan Yao, Yuqi Peng, Ming Li, Rongxing He|2024|Chemical Science|15|10046|doi:10.1039/D4SC01630K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hy3td
title: CCDC 2321894: Experimental Crystal Structure Determination

description: Related Article: Lei Zhou, Kailei Li, Yuanyuan Chang, Yuan Yao, Yuqi Peng, Ming Li, Rongxing He|2024|Chemical Science|15|10046|doi:10.1039/D4SC01630K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hy3q9
title: CCDC 2321891: Experimental Crystal Structure Determination

description: Related Article: Lei Zhou, Kailei Li, Yuanyuan Chang, Yuan Yao, Yuqi Peng, Ming Li, Rongxing He|2024|Chemical Science|15|10046|doi:10.1039/D4SC01630K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hy3sc
title: CCDC 2321893: Experimental Crystal Structure Determination

description: Related Article: Lei Zhou, Kailei Li, Yuanyuan Chang, Yuan Yao, Yuqi Peng, Ming Li, Rongxing He|2024|Chemical Science|15|10046|doi:10.1039/D4SC01630K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hzldh
title: CCDC 2323307: Experimental Crystal Structure Determination

description: Related Article: Hao Nian, Song-Meng Wang, Yan-Fang Wang, Yu-Tao Zheng, Li-Shuo Zheng, Xiaoping Wang, Liu-Pan Yang, Wei Jiang, Liping Cao|2024|Chemical Science|15|10214|doi:10.1039/D4SC02814G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j03h5
title: CCDC 2323806: Experimental Crystal Structure Determination

description: Related Article: Ruyi Li, Huaqin Wu, Hang Liu, Junjie Bai, Zao Zhang, Muyang Zhu, Pengcheng Lian, Xiaobing Wan|2024|Org.Chem.Front.|11|3881|doi:10.1039/D4QO00502C
description: Related Article: Ruyi Li, Huaqin Wu, Hang Liu, Junjie Bai, Zao Zhang, Muyang Zhu, Pengcheng Lian, Xiaobing Wan|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j5gck
title: CCDC 2328948: Experimental Crystal Structure Determination

description: Related Article: Hao-Ran Yang, Xiang Cheng, Xin Chang, Zuo-Fei Wang, Xiu-Qin Dong, Chun-Jiang Wang|2024|Chemical Science|15|10135|doi:10.1039/D4SC01804D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j5gdl
title: CCDC 2328949: Experimental Crystal Structure Determination

description: Related Article: Hao-Ran Yang, Xiang Cheng, Xin Chang, Zuo-Fei Wang, Xiu-Qin Dong, Chun-Jiang Wang|2024|Chemical Science|15|10135|doi:10.1039/D4SC01804D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jg9cp
title: CCDC 2337442: Experimental Crystal Structure Determination

description: Related Article: Samir R. Shaikh, Rupesh L. Gawade, Niteen B. Dabke, Soumya R. Dash, Kumar Vanka, Rajesh G. Gonnade|2024|CrystEngComm|26|3557|doi:10.1039/D4CE00309H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jg9dq
title: CCDC 2337443: Experimental Crystal Structure Determination

description: Related Article: Samir R. Shaikh, Rupesh L. Gawade, Niteen B. Dabke, Soumya R. Dash, Kumar Vanka, Rajesh G. Gonnade|2024|CrystEngComm|26|3557|doi:10.1039/D4CE00309H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jg9fr
title: CCDC 2337444: Experimental Crystal Structure Determination

description: Related Article: Samir R. Shaikh, Rupesh L. Gawade, Niteen B. Dabke, Soumya R. Dash, Kumar Vanka, Rajesh G. Gonnade|2024|CrystEngComm|26|3557|doi:10.1039/D4CE00309H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jg9ht
title: CCDC 2337446: Experimental Crystal Structure Determination

description: Related Article: Samir R. Shaikh, Rupesh L. Gawade, Niteen B. Dabke, Soumya R. Dash, Kumar Vanka, Rajesh G. Gonnade|2024|CrystEngComm|26|3557|doi:10.1039/D4CE00309H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jg9jv
title: CCDC 2337447: Experimental Crystal Structure Determination

description: Related Article: Samir R. Shaikh, Rupesh L. Gawade, Niteen B. Dabke, Soumya R. Dash, Kumar Vanka, Rajesh G. Gonnade|2024|CrystEngComm|26|3557|doi:10.1039/D4CE00309H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/8915541
title: Public Opinion on Climate Change (Updated Daily)
DOI: 10.25574/62321
title: Chandra X-ray Observatory ObsId 62321
DOI: 10.5281/zenodo.12697783
title: Enhancing High-Resolution Forest Stand Mean Height Mapping in China through an Individual Tree-Based Approach with Close-Range LiDAR Data

description: We have developed a tree-based approach to create spatially continuous forest stand mean height maps across China through integrating high-point density, high-precision close-range LiDAR data and multisource remote sensing data. The accuracy analysis of the arithmetic mean height (Ha) and the weighted mean height (Hw) demonstrates the feasibility of the proposed method. A practical framework for forestry investigation based on close-range LiDAR was proposed. The mean values of Ha and Hw are 13.3 ± 3.3 m 11.3 ± 2.9 m on pixel level, respectively. Validation based on LiDAR and field sample data shows that the RMSE values, range from 2.6 to 4.1 m for Ha and  2.9 to 4.3 m for Hw, respectively, indicating that our approach outperforms existing forest canopy height maps derived from area-based approaches. Hopefully, our methods and maps will serve as a foundation for estimating carbon storage, monitoring changes in forest structure, managing forest inventory, and assessing wildlife habitat availability.
DOI: 10.23729/d441d0e0-7ce7-4f76-9c1a-ef4ccaee54ff
title: STXM data of fibroblasts

description: STXM data of human fibroblasts as described in a paper:

Tuomas Mansikkala, Salla M Kangas, Ilkka Miinalainen, Pia Angervaniva, Niklas Darin, Maria Blomqvist, Reetta Hinttala, Marko Huttula, Johanna Uusimaa and Minna Patanen: Soft X-ray spectromicroscopy of human fibroblasts with impaired sialin function
DOI: 10.15468/dl.mkmkhd
title: Occurrence Download

description: A dataset containing 644595 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophrys L."
 ]
}

 The dataset includes 644595 records from 1962 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018232-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive122917.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122918.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122919.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122920.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122921.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122922.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122923.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122924.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122925.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.