cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/w6t47ssy5s.1
title: Climatic wave energy potential database for the Maritime Silk Road

description: This database is the analysis results of climatic wave energy potential in the waters of the Maritime Silk Road, hosted by the Marine Resources and Environment Research Group on the Maritime Silk Road. We aim to provide data support, scientific reference and decision making for wave energy development (such as wave power generation, seawater desalination, etc), in hope of making contribution to alleviating the resource crisis, protecting the marine ecology, improving the quality of life of the residents on the remote island, carrying out tourism and sightseeing, enhancing the living ability of remote islands and so on, thus to make positive contribution to the construction of Maritime Silk Road and the common prosperity of human society. When using this data, you must promise to quote the following two references when the article is published. Zheng C W (2019), “Climatic wave energy potential database for the Maritime Silk Road”. Mendeley Data, v1http://dx.doi.org/10.17632/w6t47ssy5s.1 Zheng C W, Li C Y, Wu H L, Wang M (2018). 21st Century Maritime Silk Road: Construction of Remote Islands and Reefs. Singapore: Springer. The information of this database is as follows, Parameters: wave power density (WPD, unit: kW/m), available level occurrence (ALO, occurrence of WPD greater than 2 kW/m, unit: %), rich level occurrence (RLO, occurrence of WPD greater than 20 kW/m, unit: %), coefficient of variation (Cv), energy storage (total storage and effective storage, unit: kW•h/m) Region: Maritime Silk Road (30-129.75°E, 30°S-30°N Spatial resolution: 0.75°×0.75° Data format: Binary Time resolution of WPD: February, May, August, November for multi-year average Time resolution of ALO: February, May, August, November for multi-year average Time resolution of RLO: February, May, August, November for multi-year average Time resolution of Cv: February, May, August, November for multi-year average Time resolution of storage: multi-year annual average for more than 30 years
DOI: 10.5061/dryad.3p4v855/5
title: VA 2010 Erisiphe necator microsatellite data

description: Contains joint mating type and microsatellite genotypes of Erisiphe necator isolates collected early in 2010 in Virginia.
DOI: 10.5061/dryad.3p4v855/6
title: Australia Rhyncosporium secalis microsatellite data

description: Contains joint mating type and microsatelite genotypes of Rhyncosporium secalis isolates collected  in Australia.
DOI: 10.5061/dryad.3p4v855/7
title: Norway Rhyncosporium secalis microsatellite data

description: Contains joint mating type and microsatelite genotypes of Rhyncosporium secalis isolates collected  in Norway.
DOI: 10.5061/dryad.3p4v855/8
title: Dothistroma septosporum microsatellite data

description: Contains joint mating type and microsatelite genotypes of Dothistroma septosporum isolates collected  in Scotland.
DOI: 10.5061/dryad.3ps1513/1
title: Dibner_etal_metadata
DOI: 10.5061/dryad.3ps1513/2
title: NOAA_weather_1907_2015 Riverton WY
DOI: 10.5061/dryad.45g90h4.1
title: Data from: Global pattern of nest predation is disrupted by climate change in shorebirds
DOI: 10.5061/dryad.45g90h4.1/1.1
title: Data and R codes for Global pattern of nest predation is disrupted by climate change in shorebirds

description: All data files (24) are in one zip folder (3 scripts, 19 dataset files, 1 file with phylogenetic trees, 1 file with all variables description). Choose one of the commented scripts (Models, Figures, SuppFigures) and run it. It will use all needed data.
DOI: 10.5061/dryad.48pt6jd/1
title: Lab Notebook (Metadata)

description: This compressed file is a digital lab notebook for all electrophysiology and photo-uncaging experiments in Otopalik, Pipkin, and Marder (2019).
DOI: 10.5061/dryad.48pt6jd/2
title: LASU Images

description: This compressed folder contains images taken with the Laser Applied Stimulation and Uncaging (LASU) system (Scientifica) during electrophysiology and glutamate photo-uncaging experiments. In brief: for each dye-filled neuron, there is a folder (same AGO_### code used in metadata) with images of its neurite tree, individual branches, and associated photo-stimulation region of interest.
DOI: 10.5061/dryad.48pt6jd/3
title: Electrophysiology and Photo-uncaging Experiments

description: This compressed folder contains raw time-series recordings for all electrophysiology and photo-uncaging experiments included in the paper. Recordings are the .abf format (acquired with Clampex software (Axon Instruments) and can be opened and viewed with either Clampfit Software (Axon Instruments) or another computing platform (e.g. MATLAB (Mathworks) using the AbfLoad function, see the Marder Lab GitHub).
DOI: 10.5061/dryad.48pt6jd/4
title: Spinning Disk Images

description: Spinning disk image stacks for neurons displayed in Figure 2C. These files can be opened in ImageJ/FIJI.
DOI: 10.5061/dryad.5j38fm7/1
title: Data JEcol-2018-0505 Li

description: Variable definitions included in a separate Excel sheet.
DOI: 10.5061/dryad.5t9211b/1
title: Simulation and analysis data

description: Includes results of invasion and adaptation simulations, and of stability analysis.
DOI: 10.5061/dryad.6v5v88g/5
title: Pungue River

description: This zip file contains a single shapefile that depicts the portion of the Pungue River (the southern boundary of Gorongosa National Park) relevant to our study.
DOI: 10.5061/dryad.6v5v88g/6
title: README

description: Detailed metadata describing the contents of each of the data files associated with this paper.
DOI: 10.5061/dryad.757v3h2/1
title: Somjee_MetabolicRate_legloss_data

description: Metabolic rates before and after leg loss for males and females in PDF format. Data are also available in CSV format. Please see README file for variable definitions.
DOI: 10.5061/dryad.757v3h2/2
title: Metabolic costs of a weapon

description: Metabolic rates before and after leg loss for males and females in CSV format. Data are also available in PDF format. Please see README file for variable definitions.
DOI: 10.5061/dryad.7n6vg10/1
title: Simulation Package for Polygenic Adaptation

description: In the simulation package we provide two different simulation programs. They track allele frequency changes of a polygenic, binary trait with complete or relaxed redundancy within the genetic basis of the trait. These programs are given in the scripts folder. The output of the simulations will be written to the output folder.

Simulation code is devided in several parts:

(1) R file: ParameterInput.r
Here all parameters can be entered. 
(2) C++ Methods:

- PolygenAdaptation_RedundantTrait.cpp
polygenic adaptation of a binary trait with complete redundancy within its genetic basis, linkage equilibrium between the loci, haploid individuals

- PolygenAdaptation_RelaxedRedundancyTrait.cpp
polygenic adaptation with relaxed redundancy, linkage equilibrium between the loci, haploid individuals

(3) There are four additinal files (2 of each), 
- WriteFile*.r are needed to create a correctly readable output- into .json and .csv files.- RunSample*.r defines the class Run, which corresponds to one replicate
DOI: 10.5061/dryad.7n6vg10/3
title: Data for Figures

description: This folder contains simulation data and summary statistics underlying the presented Figures in our manuscript. Hoellinger, Pennings, Hermisson: Polygenic Adaptation: From Sweeps to Subtle Frequency Shifts, 2019.
DOI: 10.5061/dryad.8476811/1
title: Morimotoetal-FrontInZoology-2019

description: The file contains the raw data for all analyses performed in the Morimoto et al 2019 Front in Zool paper. Different datasets are provided as tabs.
DOI: 10.5061/dryad.8s7v328/1
title: Annual_growth

description: These data represent growth measurements of transplanted individuals of two native forb species from September 2008-September 2009. The Growth column represents the difference in log-volume (log(cm3) length x width x height)  between 2008 and 2009. The Log_size column represents the  volume of plants in 2008 as log(cm3). The Species column includes codes that represent Carphephorus bellidifolius (CB) and Liatris earlei (LE). The Patch_type column represents the experimental treatment of patches in the experiment, including Connected, Winged, and Rectangular patches. The Landscape column represents the identity of eight landscape units, each containing four patches.
DOI: 10.5061/dryad.8s7v328/2
title: Annual_survival

description: These data represent survival measurements of transplanted individuals of two native forb species from September 2008-September 2009. The Survival column represents survival  between 2008 and 2009, coded as 1 for live plants and 0 for dead plants. The Log_size column represents the  volume of plants in 2008 as log(cm3). The Species column includes codes that represent Carphephorus bellidifolius (CB) and Liatris earlei (LE). The Patch_type column represents the experimental treatment of patches in the experiment, including Connected, Winged, and Rectangular patches. The Landscape column represents the identity of eight landscape units, each containing four patches.
DOI: 10.5061/dryad.d8vs845/6
title: Fig. S2 - IF higher resolution

description: Higher magnification of the immunofluorescence staining shown in Fig. 6 from DDC-treated mice.
DOI: 10.5061/dryad.d8vs845/7
title: Fig. S3 - A6 IF HKeap1 Nrf2 double-KO

description: A6 immunoreactivity in livers of HKeap1-/-::Nrf2-/- mice under control conditions.
DOI: 10.5061/dryad.f420m4q/1
title: Supplementary_SheffieldandSumrall_ExplanationofCharacters

description: List of characters used in this analysis with explanations of character states
DOI: 10.5061/dryad.g8c0r3s/1
title: 2015 India Handover Outpatient Data

description: Mixed-methods data from research investigating continuity of care for chronic, non-communicable disease patients visiting government healthcare facilities in Himachal Pradesh and Kerala states, India. The data file contains quantitative survey data from outpatients with an associated READ ME document and qualitative interview transcripts from outpatients and doctors.
DOI: 10.5061/dryad.gj8jv50/1
title: Sequencing files for Figure 1
DOI: 10.5061/dryad.gj8jv50/2
title: Sequencing files for Figure 4
DOI: 10.5061/dryad.j4tp15h/1
title: ETS+ITS

description: nuclear molecular matrix (ETS+ITS), nexus format
DOI: 10.5061/dryad.j89p2tj/1
title: Seedling removal-journal of Ecology
DOI: 10.5061/dryad.m6q87k1/1
title: Database of the seed plants of Mount Kenya

description: This is the checklist of seed plants of Mount Kenya, East Africa. In the sheet "Vascular plants of Mount Kenya", we recorded the life form and phytogeographic affinitie of each species, and also recorded the elevation range of each one. In the sheet "Endemic plants of Mount Kenya", we recorded 21 endemic species of Mount Kenya, as well as the life form and elevation range of each species.
DOI: 10.5061/dryad.mn5hn2s/2
title: Tilapia_Body and skin darkening

description: Skin and body darkening of tilapia reared at low and high density
DOI: 10.5061/dryad.nv3846b/1
title: Carnivora_MCC_tree

description: Maximum Clade Credibility tree for Carnivora
DOI: 10.5061/dryad.p8c7dg7/1
title: original data
DOI: 10.5061/dryad.r617g73/1
title: Beaugeard2018_Data_FeatherCort_HouseSparrow_juv_11sites

description: Data of feathers from juvenile house sparrows captured in 11 sites in France. Data include the date of capture (2 formats), the site of capture, the urbanization score of the site, the level of feather corticosterone expressed either in ng/mg or in ng/mm.
DOI: 10.5061/dryad.r617g73/2
title: Beaugeard2018_Data_FeatherCort_HouseSparrow_juv_4sites

description: Data of juvenile house sparrows captured in 4 sites in France. Data include the date of capture (2 formats), the site of capture, the urbanization score of the site, the feather corticosterone level expressed either in ng/mg or in ng/mm, the sex, the Scaled Mass Index (SMI), the tarsus length, the body mass, and the levels of baseline and stress-induced corticosterone in plasma.
DOI: 10.5061/dryad.rg18034/16
title: filtered_ZFG-15-11_1_13136_AGTCAA_L001_R1_001
DOI: 10.5061/dryad.rg18034/17
title: filtered_ZFG-15-11_1_13136_AGTCAA_L001_R2_001
DOI: 10.5061/dryad.rg18034/18
title: filtered_ZFG-15-11_13_13148_GTCCGC_L001_R1_001
DOI: 10.5061/dryad.rg18034/19
title: filtered_ZFG-15-11_13_13148_GTCCGC_L001_R2_001
DOI: 10.5061/dryad.rm5c4qr/1
title: Life history and physiology of Daphnia magna to nano Zinc and warming

description: These are the data for the paper "Rapid evolution in response to warming does not affect the toxicity of a pollutant: insights from experimental evolution in heated mesocosms".
DOI: 10.5061/dryad.rs7d7q7/1
title: Monroy_Kuhn_et_al_README_DRYAD

description: README Supplementary Data, pdf format
DOI: 10.5061/dryad.tm28hb6/1
title: LiDAR_articles_data

description: Extracted data from articles studying bird species distributions and diversity in relation to Light Detection and Ranging (LiDAR)
DOI: 10.5061/dryad.0dt27vb/1
title: Nutrient_Enrichment_Dataset.csv

description: Soil carbon stocks measured directly in each of the nutrient enrichment plots across all of the sites. The treatments included Control (C), Nitrogen (N), Phosphorus (P), Potassium (K), Nitrogen+Phosphorus (NP), Nitrogen+Potassium (PK), Phosphorus+Potassium (PK) and all nutrients combined (NPK). The code used to analyze these data and generate graphs is all included in Supplementary material.
DOI: 10.5061/dryad.3ps1513/3
title: Yermo_Census_Data_Compiled
DOI: 10.5061/dryad.3ps1513/4
title: YermoDemoData
DOI: 10.5061/dryad.4tb7301/1
title: Geladi_et_al_2019_Raw_data_file

description: Historical specimens were collected from NMNH (National Museum of Natural History. Modern specimens were either collected by Diana Sharpe, Luis Fernando De León or/and Rigoberto Gonzalez. If not, they were in the inventory of STRI (Smithsonian Tropical Research institute).
DOI: 10.5061/dryad.4vc0rg0/1
title: Data_Dryad_HDY-18-A0272R

description: SNP data obtained by Dart sequencing from collected samples in Reunion Island
DOI: 10.5061/dryad.71f1s18/1
title: ESM file

description: Dataset file
DOI: 10.5061/dryad.71f1s18/2
title: READ ME

description: Read me file
DOI: 10.5061/dryad.776b565/1
title: raw data

description: tab 1: Means of mass and development times across larval rearing temperatures and densities         tab 2: fecundity        tab 3: adult survival
DOI: 10.5061/dryad.840j728/1
title: Drosophila_heat_tolerance_static_assays

description: Knockdown times for 11 species of Drosophila tested in static assays (constant temperature) covering knockdown times &lt;10 min to &gt;12 h.
DOI: 10.5061/dryad.840j728/2
title: Drosophila_heat_tolerance_dynamic_assays

description: Knockdown temperatures from dynamic assays (0.05, 0.1 and 0.25 deg C/min) for 11 species of <i>Drosophila</i>.
DOI: 10.5061/dryad.8845nk5/1
title: Ili_WR_water_depth_dryad

description: Habitat characteristics describing the water depth and width of each of the creek sites. Measurements include wetted width, wetted depth, and wetted depth to width ratio. All measurements are in meters. Most measurements are unavailable (NA) for beach sites.
DOI: 10.5061/dryad.8845nk5/2
title: sockeye_raw_coordinates_dryad

description: Raw coordinate data for sockeye landmarks and curves in .tps format (from tpsDig, available at: http://life.bio.sunysb.edu/ee/rohlf/software.html). For each individual, coordinates of the 16 landmarks and two curves (25 and 15 sliders each) are provided.
DOI: 10.5061/dryad.8845nk5/3
title: sockeye_ID_site_info_dryad

description: Site information and IDs for individual sockeye, for statistical analyses and to link morphometric data to site data. For each individual, site, watershed, lake, habitat type, and sex are provided as categorical factors. The column "ID" provides unique identifiers for each individual. The column "image" includes the image name stored in the coordinate data, and can be used to join this data to morphometric data. Each image name includes the individual's ID.
DOI: 10.5061/dryad.8s7v328/3
title: Seed_production

description: These data represent developed seeds per inflorescence on transplanted individuals of two native forb species. Inflorescences were collected in September-October 2009. The Seeds column represents counts of seeds on individual stalks. The Log_size column represents the  volume of parent plants in 2008 as log(cm3). The Species column includes codes that represent Carphephorus bellidifolius (CB) and Liatris earlei (LE). The Patch_type column represents the experimental treatment of patches in the experiment, including Connected, Winged, and Rectangular patches. The Landscape column represents the identity of eight landscape units, each containing four patches.
DOI: 10.5061/dryad.8s7v328/4
title: Stalk_production

description: These data represent the total number of flowering heads (inflorescences) on transplanted individuals of two native forb species during the 2009 flowering season (September-October). The Stalks column represents counts of flowering heads per plant. The Log_size column represents the  volume of plants in 2008 as log(cm3). The Species column includes codes that represent Carphephorus bellidifolius (CB) and Liatris earlei (LE). The Patch_type column represents the experimental treatment of patches in the experiment, including Connected, Winged, and Rectangular patches. The Landscape column represents the identity of eight landscape units, each containing four patches.
DOI: 10.5061/dryad.8s7v328/5
title: First-year_growth

description: These data represent first-year growth of offspring of founder plants in September 2009, reflecting one season of individual growth post-germination. The Log_size column represents the size of plants as the log of volume (in cm3, length x width x height) . The Species column includes codes that represent Carphephorus bellidifolius (CB) and Liatris earlei (LE). The Patch_type column represents the experimental treatment of patches in the experiment, including Connected, Winged, and Rectangular patches. The Landscape column represents the identity of eight landscape units, each containing four patches.
DOI: 10.5061/dryad.8s7v328/6
title: Seedling_establishment

description: These data represent data on number of new germinants in September 2010 (the first September after seeds were added). 
The Germinants column represents the number of seedlings observed in September (excluding seedlings that germinated
and died before September). The column titled Total_seeds is a constant that represents the number of seeds added to each plot. The Species column includes codes that represent Carphephorus bellidifolius (CB) and Liatris earlei (LE). The Patch_type column represents the experimental treatment of patches in the experiment, including Connected, Winged, and Rectangular patches. The Landscape column represents the identity of eight landscape units, each containing four patches.
DOI: 10.5061/dryad.8s7v328/7
title: Observed_abundance

description: These data represent the observed abundance in 32 reintroduced populations of two native forb species. The column Abundance2009 represents counts of each species in plots in 2009, Abundance2012 represents counts of each species in plots in 2012, and Abundance2015 represents counts of each species in plots in 2015.The Species column includes codes that represent Carphephorus bellidifolius (CB) and Liatris earlei (LE). The Patch column represents the identity of patches where populations were located, with possible values including B,C,D, and E. The Landscape column represents the identity of eight landscape units, each containing four patches. Together, the Patch and Landscape columns represent unique populations. The Patch_type column represents the experimental treatment of patches in the experiment, including Connected, Winged, and Rectangular patches. Lambda9_12 represents the annualized population growth rate between 2009 and 2012, while Lambda9_15 represents the annualized population growth rate between 2009 and 2015.
DOI: 10.5061/dryad.c3770vq/1
title: VCF file of the SNP calling from RADseq data

description: VCF file from pyRAD analysis
DOI: 10.5061/dryad.c3770vq/2
title: Population assignments

description: File with population assignments for the samples: a two column text file with the sample ids in the first column and the ids of the populations in the second column.
DOI: 10.5061/dryad.c3770vq/3
title: Matrix of RAD loci from pyRAD analysis

description: NEXUS file used for SVDquartet analysis
DOI: 10.5061/dryad.cp7v85c/1
title: V10_optimum_RSOS

description: Matlab code used to find the value of turbine drag parameter which maximises the expected power under uncertain bed roughness parameter for the model presented in R.A. Vennell, Tuning Tidal Turbines In-Concert to Maximise Farm Efficiency, J. Fluid Mech., 671:587–604, 2010.
DOI: 10.5061/dryad.d7c40gn/1
title: Focal scenario

description: These data are the simulated fixation proportions for the focal scenario. Rows represent the selection coefficient. Columns represent the number of fixed deleterious alleles per population.
DOI: 10.5061/dryad.d7c40gn/2
title: Genotype frequency trajectories

description: These data represent the distribution of genotypes at the outcrossing modifier locus over time. The first column represents the frequency of mm, the second column represents the frequency of Mm, and the third column represents the frequency of MM. Each row represents a generation. NAs represent untracked generations after fixation has already occurred.
DOI: 10.5061/dryad.d7c40gn/3
title: Unequal fitness

description: These data represent fixation proportions for scenarios in which the two parental populations have unequal fitnesses.
DOI: 10.5061/dryad.d7c40gn/4
title: Unequal size

description: These data represent fixation proportions when the two parental populations contribute unequally to the daughter population. Columns represent number of fixed deleterious alleles per population, and rows represent the initial frequency of the ancestral genotype on which the outcrossing mutation arose.
DOI: 10.5061/dryad.d7c40gn/5
title: Unpurged inbreeding depression

description: These data represent trials used to determine the effect of initial unpurged inbreeding depression in the parental populations. Each file contains a fixation proportion, designates whether there was initial inbreeding depression or not, and designates how many additional fixed sites per population there were.
DOI: 10.5061/dryad.d7c40gn/6
title: Trajectories with inbreeding depression tracked

description: Contains population trajectories in which average fitness, maximum fitness, inbreeding depression, and modifier genotype frequencies are tracked through time. Except for inbreeding depression, each trajectory is a three-column matrix in which each column represents a modifier-locus genotype (e.g., average fitness of individuals with genotype Mm). Each row is a generation. Inbreeding depression is vector of the population's inbreeding depression through time.
DOI: 10.5061/dryad.d8vs845/8
title: Fragoulis et al. - Nrf2 protects against DDC (TOXSCI-18-0647.R3)_supplements
DOI: 10.5061/dryad.db3q9t0/1
title: Seed dispersal effectiveness on islands

description: This dataset included the islands mark(mark), defaunation index (D), rodent competition for acorns (CRA) and SDE on each study islands as well as islands attributes
DOI: 10.5061/dryad.dp13668/1
title: Supplementary Material
DOI: 10.5061/dryad.dp13668/2
title: Datafile_S1

description: Datafile_S1:  Data matrix for RAxML analysis for single batch RADseq data
DOI: 10.5061/dryad.dp13668/3
title: Datafile_S2

description: Datafile_S2: Data matrix for RAxML analysis for combined-batch RADseq data
DOI: 10.5061/dryad.f420m4q/2
title: DataMatrix_SheffieldSumrall_Diploporita

description: Character codings for all specimens used in analysis. Explanations for each character can be found in .docx file within this Dryad repository
DOI: 10.5061/dryad.f420m4q/3
title: comparision_Noconstraint_Family_templeton

description: Coding for Templeton test comparing forced monophyletic groupings of families within Diploporita against no constraints.