cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh2675556.08fu
title: SH2675556.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2675557.08fu
title: SH2675557.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2675558.08fu
title: SH2675558.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1985045.08fu
title: SH1985045.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1985046.08fu
title: SH1985046.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1985047.08fu
title: SH1985047.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2675559.08fu
title: SH2675559.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2675560.08fu
title: SH2675560.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.6444308.v1
title: Additional file 7: of A major locus controls local adaptation and adaptive life history variation in a perennial plant

description: Table S6. Average values of 39 environmental variables over the years 2002â 2012 for the original sample location of 94 P. tremula individuals used in this study. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.6444305
title: Additional file 1: of Spatial, temporal, and spatiotemporal analysis of under-five diarrhea in Southern Ethiopia

description: Time series plot of under-five diarrhea incidence rate per 1000. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.6444305.v1
title: Additional file 1: of Spatial, temporal, and spatiotemporal analysis of under-five diarrhea in Southern Ethiopia

description: Time series plot of under-five diarrhea incidence rate per 1000. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.6444287
title: Additional file 5: of Evolutionary divergence of 3â UTRs in cichlid fishes

description: Table S4. Name and sequence of the 271 teleost miRNAs conserved in vertebrates. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.6444287.v1
title: Additional file 5: of Evolutionary divergence of 3â UTRs in cichlid fishes

description: Table S4. Name and sequence of the 271 teleost miRNAs conserved in vertebrates. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.6444284
title: Additional file 4: of Evolutionary divergence of 3â UTRs in cichlid fishes

description: Table S3. Percentage of repetitive elements in 3â UTRs, 5â UTRs, coding regions and in the whole genome. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6444284.v1
title: Additional file 4: of Evolutionary divergence of 3â UTRs in cichlid fishes

description: Table S3. Percentage of repetitive elements in 3â UTRs, 5â UTRs, coding regions and in the whole genome. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6444257
title: Additional file 4: of A major locus controls local adaptation and adaptive life history variation in a perennial plant

description: Table S3. List of the 1615 candidate SNPs associated with local adaptation. (XLSX 234 kb)
DOI: 10.6084/m9.figshare.6444257.v1
title: Additional file 4: of A major locus controls local adaptation and adaptive life history variation in a perennial plant

description: Table S3. List of the 1615 candidate SNPs associated with local adaptation. (XLSX 234 kb)
DOI: 10.6084/m9.figshare.6444248
title: Additional file 2: of Evolutionary divergence of 3â UTRs in cichlid fishes

description: Table S2. Comparison of annotations for the nine teleost fish species. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6444248.v1
title: Additional file 2: of Evolutionary divergence of 3â UTRs in cichlid fishes

description: Table S2. Comparison of annotations for the nine teleost fish species. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6444224
title: Additional file 1: of Evolutionary divergence of 3â UTRs in cichlid fishes

description: Table S1. Genomic and transcriptomic data of the nine teleost fish species included in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6444224.v1
title: Additional file 1: of Evolutionary divergence of 3â UTRs in cichlid fishes

description: Table S1. Genomic and transcriptomic data of the nine teleost fish species included in this study. (XLSX 11 kb)
DOI: 10.25959/5f4a534a4c7e4
title: PhD Thesis Supplemental Data
DOI: 10.6084/m9.figshare.6444140
title: Additional file 3: of Gene expression profiling in the developing secondary palate in the absence of Tbx1 function

description: KEGG pathway analysis. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6444140.v1
title: Additional file 3: of Gene expression profiling in the developing secondary palate in the absence of Tbx1 function

description: KEGG pathway analysis. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6444110
title: Additional file 2: of Gene expression profiling in the developing secondary palate in the absence of Tbx1 function

description: List of genes differentially expressed in WT compared to heterozygous palates (nâ =â 400) (Group B). (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.6444110.v1
title: Additional file 2: of Gene expression profiling in the developing secondary palate in the absence of Tbx1 function

description: List of genes differentially expressed in WT compared to heterozygous palates (nâ =â 400) (Group B). (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.6444041
title: Additional file 7: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S7 and Figure S1. CCHCR1 and HLA-Cw6 genotypes of the skin samples. Figure S1. The CCHCR1 and HLA-Cw6 genotypes illustrated in a PCA plot. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.6444041.v1
title: Additional file 7: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S7 and Figure S1. CCHCR1 and HLA-Cw6 genotypes of the skin samples. Figure S1. The CCHCR1 and HLA-Cw6 genotypes illustrated in a PCA plot. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.6444023
title: Additional file 6: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S6. Haplotype specific gene enrichment analyses based on re-extracted DEGs of the CCHCR1-HEK293 cell lines. The DEGs were obtained from the pooled data of Iso1Non-Risk and Iso3Non-Risk, and Iso1Risk and Iso3Risk compared to the controls (wildtype and vector). The DEGs (comb_Non-Risk, comb_Risk) were analysed using the KEGG pathway analysis of WebGestaltR. Summary of the gene enrichment results among the mock DEGs lists. (XLSX 2314 kb)
DOI: 10.6084/m9.figshare.6444023.v1
title: Additional file 6: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S6. Haplotype specific gene enrichment analyses based on re-extracted DEGs of the CCHCR1-HEK293 cell lines. The DEGs were obtained from the pooled data of Iso1Non-Risk and Iso3Non-Risk, and Iso1Risk and Iso3Risk compared to the controls (wildtype and vector). The DEGs (comb_Non-Risk, comb_Risk) were analysed using the KEGG pathway analysis of WebGestaltR. Summary of the gene enrichment results among the mock DEGs lists. (XLSX 2314 kb)
DOI: 10.6084/m9.figshare.6444008
title: Additional file 3: of Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies

description: IPA output. (XLS 72 kb)
DOI: 10.6084/m9.figshare.6444008.v1
title: Additional file 3: of Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies

description: IPA output. (XLS 72 kb)
DOI: 10.6084/m9.figshare.6444002
title: Additional file 5: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S5. Isoform specific gene enrichment analyses based on re-extracted DEGs of the CCHCR1-HEK293 cell lines. The DEGs were obtained from the pooled data of Iso1Non-risk and Iso1Risk, and Iso3Non-risk and Iso3Risk compared to the controls (wildtype and vector). The DEGs (comb_Iso1 and comb_Iso3) were analysed using the KEGG pathway analysis of WebGestaltR. (XLSX 3054 kb)
DOI: 10.6084/m9.figshare.6444002.v1
title: Additional file 5: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S5. Isoform specific gene enrichment analyses based on re-extracted DEGs of the CCHCR1-HEK293 cell lines. The DEGs were obtained from the pooled data of Iso1Non-risk and Iso1Risk, and Iso3Non-risk and Iso3Risk compared to the controls (wildtype and vector). The DEGs (comb_Iso1 and comb_Iso3) were analysed using the KEGG pathway analysis of WebGestaltR. (XLSX 3054 kb)
DOI: 10.6084/m9.figshare.6443996
title: Additional file 2: of Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies

description: Comparison of differentially methylated genes with previously published imprinted genes. (XLS 28 kb)
DOI: 10.6084/m9.figshare.6443996.v1
title: Additional file 2: of Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies

description: Comparison of differentially methylated genes with previously published imprinted genes. (XLS 28 kb)
DOI: 10.6084/m9.figshare.6443993
title: Additional file 7: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: Jackknife sensitivity analysis results for the DEGs associated with the gain by intake interaction. Jackknife 1 P-value gives the adjusted P-value for the meta-analysis with Cohort 1 removed, Jackknife 2 P-value gives the adjusted P-value for the meta-analysis with Cohort 2 removed, and so on. Yellow cells indicate jackknife analyses where the P-value was insignificant, i.e. the gene failed to pass the jackknife analysis. (XLSX 1030 kb)
DOI: 10.6084/m9.figshare.6443993.v1
title: Additional file 7: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: Jackknife sensitivity analysis results for the DEGs associated with the gain by intake interaction. Jackknife 1 P-value gives the adjusted P-value for the meta-analysis with Cohort 1 removed, Jackknife 2 P-value gives the adjusted P-value for the meta-analysis with Cohort 2 removed, and so on. Yellow cells indicate jackknife analyses where the P-value was insignificant, i.e. the gene failed to pass the jackknife analysis. (XLSX 1030 kb)
DOI: 10.6084/m9.figshare.6443987
title: Additional file 4: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S4. Isoform- and haplotype-specific gene enrichment with the shared DEGs of the CCHCR1-HEK293 cell lines. Gene enrichment analyses of DEGs shared by only the Non-risk (Diff N), Risk (Diff R), isoform 1 (Diff iso1), or isoform 3 (Diff iso3) CCHCR1cell lines (see in detail Fig. 4 Venn diagram). The DEGs shared by all the CCHCR1 cell lines (Intersection) were analyzed as well. Analyses were done using the GO and cluster analyses from DAVID and KEGG pathway analysis from WebGestalt and WebGestaltR. (XLSX 307 kb)
DOI: 10.6084/m9.figshare.6443987.v1
title: Additional file 4: of Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes

description: Table S4. Isoform- and haplotype-specific gene enrichment with the shared DEGs of the CCHCR1-HEK293 cell lines. Gene enrichment analyses of DEGs shared by only the Non-risk (Diff N), Risk (Diff R), isoform 1 (Diff iso1), or isoform 3 (Diff iso3) CCHCR1cell lines (see in detail Fig. 4 Venn diagram). The DEGs shared by all the CCHCR1 cell lines (Intersection) were analyzed as well. Analyses were done using the GO and cluster analyses from DAVID and KEGG pathway analysis from WebGestalt and WebGestaltR. (XLSX 307 kb)
DOI: 10.6084/m9.figshare.6443984
title: Additional file 1: of Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies

description: Full list of differentially methylated probes and their genomic coordinates. (XLS 820 kb)
DOI: 10.6084/m9.figshare.6443984.v1
title: Additional file 1: of Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies

description: Full list of differentially methylated probes and their genomic coordinates. (XLS 820 kb)
DOI: 10.6084/m9.figshare.6443975
title: Additional file 6: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: Jackknife sensitivity analysis results for the DEGs associated with the intake main effect. Genes with all gray cell indicate those that were excluded because they were also significant for the gain by intake interaction term. Jackknife 1 P-value gives the adjusted P-value for the meta-analysis with Cohort 1 removed, Jackknife 2 P-value gives the adjusted P-value for the meta-analysis with Cohort 2 removed, and so on. Yellow cells indicate jackknife analyses where the P-value was insignificant, i.e. the gene failed to pass the jackknife analysis. (XLSX 1095 kb)
DOI: 10.6084/m9.figshare.6443975.v1
title: Additional file 6: of RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

description: Jackknife sensitivity analysis results for the DEGs associated with the intake main effect. Genes with all gray cell indicate those that were excluded because they were also significant for the gain by intake interaction term. Jackknife 1 P-value gives the adjusted P-value for the meta-analysis with Cohort 1 removed, Jackknife 2 P-value gives the adjusted P-value for the meta-analysis with Cohort 2 removed, and so on. Yellow cells indicate jackknife analyses where the P-value was insignificant, i.e. the gene failed to pass the jackknife analysis. (XLSX 1095 kb)
DOI: 10.6084/m9.figshare.6443972
title: Additional file 8: of Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

description: Table S4. Primers list in this study. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6443972.v1
title: Additional file 8: of Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

description: Table S4. Primers list in this study. (XLSX 16 kb)