cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6f529/1
title: Svenson_Rodrigues_Caribbean_Dataset

description: Nexus format dataset of aligned genetic sampling from 12S rRNA, 16S rRNA, 18S rRNA, 28S rRNA, Cytochrome Oxidase I (COI), Cytochrome Oxidase II (COII), NADH dehydrogenase subunit 4 (ND4), Histone 3 (H3), and Wingless (wnt-1) with partition scheme.
DOI: 10.5061/dryad.6q3db/1
title: Hiramatsu et al raw data and code for analyses

description: raw data of performance and R codes for statistical analyses
DOI: 10.5061/dryad.772g3/1
title: Berry abundance time series

description: Ripe bilberries (Vaccinium myrtillus) and lingonberries (Vaccinium vitis-idaea) were counted in permanent sampling plots between 2006 - 2015. Weather covariates were extracted from an on-site weather station for each year.
DOI: 10.5061/dryad.772g3/2
title: Autumn weight of female bears

description: Bodyweight of female brown bears (Ursus arctos) shot in the annual bear hunting season in autumn 2006 - 2015.
DOI: 10.5061/dryad.785bn/1
title: numerical_analysis_figs3-5

description: These are the results from the numerical analysis when run to produce figures 3 through 5 in the manuscript.
DOI: 10.5061/dryad.785bn/2
title: fdist2_output

description: This zipped file contains the output from running fdist2 with a variety of starting parameter combinations. The parameter combinations are listed in the "parameters" file, which has index numbers that match the file names.
DOI: 10.5061/dryad.7m644/1
title: Cp values from the gene expression assay
DOI: 10.5061/dryad.7m644/2
title: Behavioural data on mating behaviour
DOI: 10.5061/dryad.7m644/3
title: Behavioural data on remating behaviour
DOI: 10.5061/dryad.7m644/4
title: Data on male reproductive success
DOI: 10.5061/dryad.7m644/5
title: Data on accessory gland protein replenishment
DOI: 10.5061/dryad.87486/1
title: BMJ. Supplement - eFigure 1 (age)
DOI: 10.5061/dryad.87486/2
title: BMJ. Supplement - eTable 1 (EMBASE Search Strategy)
DOI: 10.5061/dryad.87486/3
title: BMJ. Supplement - eTable 2 (Congress)
DOI: 10.5061/dryad.87486/4
title: BMJ. Supplement - eTable 3 (Prisma Checklist)
DOI: 10.5061/dryad.9nb56/10
title: WeatherCases.m

description: A function m-file named WeatherCases.m related to comparison of two cases (a region with multiple SWMPs)
DOI: 10.5061/dryad.9nb56/11
title: WeatherKappa.m

description: A function m-file named WeatherKappa.m to show the role of intraspecific competition
DOI: 10.5061/dryad.9nb56/3
title: ODE_WNV.m

description: A function m-file named ODE_WNV.m related to sensitive analysis to define the dynamical system
DOI: 10.5061/dryad.9nb56/4
title: LHS_Call.m

description: A function m-file named LHS_Call.m related to sensitive analysis
DOI: 10.5061/dryad.9nb56/5
title: Para_settings.m

description: M-file named Para_settings.m related to sensitive analysis
DOI: 10.5061/dryad.9nb56/6
title: PRCCM.m

description: A function m-file named PRCCM.m related to sensitive analysis
DOI: 10.5061/dryad.9nb56/7
title: PRCCR0.m

description: A function m-file named PRCCR0.m related to sensitive analysis
DOI: 10.5061/dryad.9nb56/8
title: Main script named Model.m

description: Main script (related to sensitive analysis) calls functions R0.m, ODE_WNV.m, LHS_Call.m, PRCCM.m, PRCCR0.m and Para_settings.m.
DOI: 10.5061/dryad.9nb56/9
title: Weather.m

description: A function m-file named Weather.m to define a weather-driven dynamical system
DOI: 10.5061/dryad.b88c7/1
title: Sociometric badge data

description: Attached, sociometric badge's IR sensor data collected by 52 participants is given. The sensors collect the social interaction of the participants in the work environment by Infrared sensors. The schema of the file is: Ego ID | Alter ID | Timestamp
DOI: 10.5061/dryad.b88c7/3
title: Big-Five Personality States surveys

description: In the attached file big-five personality scores (1-7) are given for the 52 participants, filled three times a day for 6 weeks period. The schema of the file is: ID of the participant | Timestamp | Extraversion | Agreeableness	|Conscientiousness	| EmotionalStability	| Creativity
DOI: 10.5061/dryad.f40v5/1
title: COI-filtering-DB.fas.tar

description: Custom COI database used during HTS filtering in order to keep only relevant COI sequences
DOI: 10.5061/dryad.f40v5/2
title: Taxassign-DB.fas.tar

description: Custom COI database used for taxonomic assignement. It contains selected COI sequences from BOLD and sequences produced in the lab (MF458551 - MF458851). 
Sequences are in fasta format. ID lines contain taxon names and NCBI TaxIDs. If NCBI TaxID is not available for the taxon, the TaxID of its lowest level parent is given.
DOI: 10.5061/dryad.f40v5/3
title: Perl_scripts.tar

description: Perl script used for data filtering and taxonomic assignment.
DOI: 10.5061/dryad.g7616/2
title: Low Risk Focal Follows

description: Focal follows of individual Trinidadian guppies in groups exposed to low background levels of predation risk. Observations specify whether or not a fish was shoaling and, if so, the identity of their nearest neighbor. See the README file for additional details.
DOI: 10.5061/dryad.g7616/3
title: Association Networks

description: Association networks for groups of guppies exposed to either low or high levels of background predation risk. Edge weights indicate the number of shared contact phases between each pair. See the README and main text for additional details.
DOI: 10.5061/dryad.g7616/4
title: Assortativity Coefficients

description: Includes the weighted assortativity coefficient with regards to body size for the association networks of guppy groups exposed to high and low background levels of predation risk. See the README for additional details.
DOI: 10.5061/dryad.g7616/5
title: Individual Level Data

description: Includes data for each individual regarding its group, background risk treatment, body size, experimental block, whether or not it approached/solved the foraging task, latency to approach/solve the foraging task, and how many times it entered the foraging device. See README file and main text for additional details.
DOI: 10.5061/dryad.g7616/6
title: README

description: Provides additional details regarding the contents of the data files accompanying this Dryad entry.
DOI: 10.5061/dryad.g7j3k/1
title: Devario measurement data

description: Measurement data in xlx file format for specimens of Devario from Bangladesh and comparative material from India and Myanmar. Each specimen is identified by collection Code and Catalog Number. Blank cells signify absent data. Figures are tenths of mm (multiply with 10 for conversion to mm)
DOI: 10.5061/dryad.gk110/1
title: HIV data for primary (PHI) and chonic (CHI) HIV infected groups
DOI: 10.5061/dryad.h3b41/1
title: Data and analysis R scripts

description: Data, metadata, and analysis R scripts associated to the article "Can't live with them, can't live without them? Balancing mating and competition in two-sex populations".
DOI: 10.5061/dryad.j17pm/1
title: Kriebel_Khabbazian_Sytsma_2017

description: This data package includes the files needed to reproduce the analyses of the following paper: Kriebel, R., Khabbazian, M., and K. J. Sytsma. A continuous morphological approach to study the evolution of pollen in a phylogenetic context: an example with the order Myrtales
DOI: 10.5061/dryad.k14tt/1
title: Supplementary tables

description: model output of the oxygen isotope composition of oviraptorosaur embryo bone phosphate
DOI: 10.5061/dryad.m5g04.1
title: Data from: A national-scale model of linear features improves predictions of farmland biodiversity
DOI: 10.5061/dryad.m5g04.1/1.1
title: Species abundance data from Sullivan et al. A national-scale model of linear-features improves predictions of farmland biodiversity

description: Bird (from the BBS) and butterfly (from the UKBMS) abundance data used in the paper. Bird species names are given as BTO species codes. Sites where no study species were recorded have "NoTargetBirdRecorded" or "NoTargetButterflyRecorded" in the species column, and no value in the count column. NOTE -  because this dataset has been processed as described in the paper, we strongly recommend researchers wishing to use BBS and UKBMS data in their own research to obtain data from the BTO (https://www.bto.org/research-data-services/data-services/data-request-system) and the UKBMS (http://www.ukbms.org/Obtaining.aspx) rather than use this file.
DOI: 10.5061/dryad.m5g04.2/2.2
title: Linear features length

description: Length (m) of linear and woody linear features in 1 km buffers around survey sites.
DOI: 10.5061/dryad.n2b3h/1
title: MaddisonEtAl2017-SalticidAHE447-separateMatrices

description: NEXUS file of 447 loci (each a separate aligned matrix) for salticid spiders and outgroups.  Data obtained by Anchored Hybrid Enrichment, Spider Probe Set version 2.
DOI: 10.5061/dryad.q5gg0/15
title: JudayCreek.aligning.unique.sorted.MarkedDuplicates

description: Zipped file contains all reads mapped to references considered in study.  The file in conjunction with mitogenomes_all_corrected_reading_frame.v0301.txt allows the SNPs to be called in using Geneious and for generation of mapping results illustrated in Figure 2.
DOI: 10.5061/dryad.r1s25/1
title: Base Compatibilidad

description: Data of field cages evaluations to determine compatibility between Anastrepha ludens strains
DOI: 10.5061/dryad.r1s25/2
title: Competitiviness and survival under stress

description: Survival to 24 hr of desiccation and competitiviness of males under field cage evaluation of Anastrepha ludens
DOI: 10.5061/dryad.r1s25/3
title: Base Competititvidad seleccionados vs no seleccionados (F0)

description: field cage data of evaluations of male sexual competitiveness between selected for desiccation and control (no selected) strains of Anastrepha ludens
DOI: 10.5061/dryad.s2v81.2/18.2
title: MERRAclim. 5m_min_80s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1980s decade at 5 arcminutes resolution in GEOtiff format. The humidity version used is the min. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.2/19.2
title: MERRAclim. 2_5m_max_00s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 2000s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the max. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.2/20.2
title: MERRAclim. 2_5m_max_90s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1990s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the max. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.2/21.2
title: MERRAclim. 2_5m_max_80s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1980s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the max. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.2/22.2
title: MERRAclim. 2_5m_mean_00s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 2000s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the mean. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.2/23.2
title: MERRAclim. 2_5m_mean_90s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1990s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the mean. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.2/24.2
title: MERRAclim. 2_5m_mean_80s

description: MERRAclim Dataset. 19 global bioclimatic variables from the1980s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the mean. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.2/25.2
title: MERRAclim. 2_5m_min_00s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 2000s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the min. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.2/26.2
title: MERRAclim. 2_5m_min_90s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1990s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the min. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s5r8q/1
title: FDP inventory for Dryad

description: Woody plant inventories from first and second survey of the Las Cruces Biological Station forest dynamics plot.
DOI: 10.5061/dryad.s5r8q/2
title: FDP grid topography for Dryad

description: X, Y coordinates and elevation relative to an arbitrary starting point, for all corners of the 10 m x 10 m grid demarking the LCBS forest dynamics plot.  In addition, change in elevation and steepness (degrees) between adjacent grid points.
DOI: 10.5061/dryad.s67c8/23
title: R script for analysis of survivorship
DOI: 10.5061/dryad.s67c8/24
title: Data_survivorship_larvae_to_pupae
DOI: 10.5061/dryad.s67c8/25
title: Data_survivorship_pupae_to_adult
DOI: 10.5061/dryad.s67c8/26
title: Data_survivorship_adult_to_eggs
DOI: 10.5061/dryad.v54v8/1
title: lebreton 1 spectrum tabulated

description: Mass spectrum Z4-11Al, tabulated (Figure 1A); Excel.
DOI: 10.5061/dryad.v54v8/3
title: lebreton 3 ssr screening

description: Single sensillum screening, all sensillum types, native antenna (Figure 1D); Excel.
DOI: 10.5061/dryad.v54v8/4
title: lebreton 4 ssr ab9 ab3

description: Single sensillum recordings in ab9 (native) and ab3 sensilla (following heterologous expression) (Figure 2A,B); Excel.
DOI: 10.5061/dryad.v54v8/5
title: lebreton 5 strain energies

description: Pairwise compound comparison (Figure 2C); Excel.
DOI: 10.5061/dryad.v54v8/6
title: lebreton 6 wind tunnel

description: Wind tunnel bioassay (Figure 3); Excel.
DOI: 10.5061/dryad.v54v8/7
title: lebreton 7 OR69a sequenced transgenes

description: Sequences of OR69a variants used to produce transgenic “empty neuron” flies (Figure 2B). These are 99-100% identical to sequences in the NCBI database. Text file.
DOI: 10.5061/dryad.v54v8/8
title: lebreton 8 oxidation

description: Oxidation of 7,11-HD on glass (Table 2); Excel.
DOI: 10.5061/dryad.16g90/1
title: Compressed_data_file

description: Compressed file includes codes, data on species wise coloration and experimental data associated with the article.
DOI: 10.5061/dryad.1m90s/1
title: Data from: Lianas abundance is positively related with the avian acoustic community in tropical dry forests

description: The file includes information about the name of the forest sites where we evaluated liana abundance and the avian acoustic community at Santa Rosa National Park, Costa Rica, and also data about the number of lianas (the number of lianas divided by the number of trees observed in each plot), the total number of sounds detected in recordings, the total number of bird species detected in recordings, the Acoustic Complexity Index (ACI) generated from recordings, Tree Basal Area, Tree Canopy Height, and Plant Area Index.
DOI: 10.5061/dryad.20536/1
title: Data and Species Codes

description: Gridmaps of each plot with cells coded with numbers corresponding to the species that occupy them.
DOI: 10.5061/dryad.2317g/1
title: Species_data_Triodia&ChenopodMallee

description: Two data files, one for species recorded in Triodia Mallee and the other for species recorded in Chenopod Mallee. The data is the relative occurrence or abundance of each species by vegetation stage for the three alternate models of vegetation succession (3-stage, 4-stage and 6/7-stage). Species are listed by data type; presence-absence (PA), presence-only (PO) or expert estimates (EE). Some species are present in more than one data type.
DOI: 10.5061/dryad.29nk3.1
title: Data from: Infection dynamics in coexisting sexual and asexual host populations: support for the Red Queen hypothesis
DOI: 10.5061/dryad.29nk3.1/1.1
title: Data from: Infection dynamics in coexisting sexual and asexual populations: support the Red Queen hypothesis

description: Long-term field data from Vergara et al: Infection dynamics in coexisting sexual and asexual populations: support the Red Queen hypothesis.  Column headings: "year" gives year of sample; "site" gives the location of the study site at Lake Alexandrina, New Zealand; "gender" gives male or female; "Microphallus" gives infection status: 1 = infected with Microphallus, 2 = not infected with Microphallus; "ploidy" gives reproductive strategy: sexual = diploid; asexual = triploid.
DOI: 10.5061/dryad.29nk3.2
title: Data from: Infection dynamics in coexisting sexual and asexual host populations: support for the Red Queen hypothesis
DOI: 10.5061/dryad.29nk3.2/1.2
title: Data from: Infection dynamics in coexisting sexual and asexual populations: support the Red Queen hypothesis

description: Long-term field data from Vergara et al: Infection dynamics in coexisting sexual and asexual populations: support the Red Queen hypothesis.  Column headings are defined in the Excel workbook, on the sheet labeled "Key".
DOI: 10.5061/dryad.2cs4v/1
title: Aligned supermatrices & SNP matrices

description: Add data sets referred to in Table 1 and Table 2 are included. Supermatrices are in nexus format and unlinked SNP files are in .str format, and include sample assignment information based on RAxML analyses (see Figure 1). Sample assignment information should not be used to inform STRUCTURE analyses however, but to help with graphical display and order of samples. All data files were produced in PyRAD v. 2.17. (Eaton 2014) Details of data file generation can be found in the main text and SI of the associated paper.
DOI: 10.5061/dryad.2cs4v/2
title: demultiplexed & trimmed reads for all samples (n=81)

description: Compressed package with demultiplexed and trimmed RADseq data for 81 samples (i.e. 81 .fastq.gz files representing all samples listed in Appendix S1). Demultiplexing and trimming was done in PyRAD v. 2.17 (Eaton 2014). Reads were de-multiplexed allowing for a maximum of two mismatches in each eight bp barcode, and restriction enzyme cut sites and adapter sequences were removed. .fastq.gz files are named as such: Sample ID-Collection#.fastq.gz. For example, Nepal_1_1101.fastq.gz is for the sample identified as "Nepal_1" in the associated publication, which was also assigned collection number 1101. The sample ID provides information on the general collection locality.
DOI: 10.5061/dryad.2j05h/1
title: Data on growth, reproduction, and survival of adult female snapping turtles in Algonquin Park, Canada

description: The file has a set of matrices showing encounter histories, carapace lengths, and clutch masses for 298 adult females over 41 years (1972-2012). These correspond exactly to the data used in the article, which are also provided in OpenBUGS format as Supporting Information.
DOI: 10.5061/dryad.30tk6/1
title: Description_data_GSE_Global_pigs

description: Table describing the samples. Note that the submitted data includes a few animals that were removed from the paper due to additional constraints applied in the review process.
DOI: 10.5061/dryad.40s3m/1
title: Scott MS JPaleo data file

description: Excel file of species and measurements of morphological parameters
DOI: 10.5061/dryad.436c0/1
title: Kuppler et al. exploited space overlap of native and exotic flower visitors (single dimensions)

description: Overlap for each exploited space dimension of native and exotic flower visitor species. Dimension-wise exploited space size were calculated for floral morphology, weather conditions and floral scent compounds using dynamic range boxes (Junker et al., 2016, MEE).
DOI: 10.5061/dryad.436c0/2
title: Kuppler et al. Emission rate of floral volatiles

description: Emission rate of volatiles originating from six biochemical pathways in native and exotic plant species. For all functional groups emission rate in ng h[-1] 100mg[-1] dry mass flower are given. Functional groups are aliphatics (A), aromatics (AR), C5-branched pathway (C5), irregular terpenes (IT), monoterpenes (MT), sesquiterpenes (ST). The sample of Sesbania tomentosa was broken and thus this sample was excluded.
DOI: 10.5061/dryad.436c0/3
title: Kuppler et al. exploited space size of native and exotic flower visitors (single dimensions)

description: Size for each exploited space dimension of native and exotic flower visitor species. Dimension-wise exploited space size were calculated for all measured floral traits, weather conditions and floral scent compounds using dynamic range boxes (Junker et al., 2016, MEE).
DOI: 10.5061/dryad.436c0/4
title: Kuppler et al. Native and exotic flower-visitor species observed in the study

description: Observed native and exotic flower visiting taxa. Taxa names are given as species names, morphospecies (M1, M2, etc.) or as genera potentially comprising several species.
DOI: 10.5061/dryad.436c0/5
title: Kuppler et al. Native and exotic plant species observed in the study

description: Native and exotic plant species observed in the study. Given are number of occurrences on study sites and number of floral units (inflorescence or flower) on all study sites.
DOI: 10.5061/dryad.436c0/6
title: Kuppler et al. Native and exotic species exploited space size and overlap (full exploited space)

description: Size and overlap for each exploited space of native and exotic flower visitor species. Exploited space size and overlap were calculated including measured floral morphology, weather conditions and floral scent compounds using dynamic range boxes (Junker et al., 2016, MEE).
DOI: 10.5061/dryad.436c0/7
title: Kuppler et al. Native and exotic species exploited space size and overlap (Morphology)

description: Size and overlap for each exploited space of native and exotic flower visitor species. Exploited space size and overlap were calculated including floral morphology using dynamic range boxes (Junker et al., 2016, MEE).
DOI: 10.5061/dryad.436c0/8
title: Kuppler et al. Native and exotic species exploited space size and overlap (scent)

description: Size and overlap for each exploited space of native and exotic flower visitor species. Exploited space size and overlap were calculated including floral scent compounds using dynamic range boxes (Junker et al., 2016, MEE).