cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/133573
title: Radiometer data collected during research cruise FK190315 using a Biospherical QSR-2200 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133574
title: Radiometer data collected during research cruise FK190315 using a Biospherical QSR-2200 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133569
title: Speedlog data collected during research cruise FK190315 using a SKIPPER EL244 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133068
title: SSV (Sound Speed Velocimeter) data collected during research cruise FK190315 using a Valeport MiniSVS instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577126
title: Additional file 3: of Differential sexual network connectivity offers a parsimonious explanation for population-level variations in the prevalence of bacterial vaginosis: a data-driven, model-supported hypothesis

description: The Netlogo model of BV transmission. (NLOGO 30 kb)
DOI: 10.7284/133069
title: TSG (Thermosalinograph) data collected during research cruise FK190315 using a Sea-Bird SBE-45 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577126.v1
title: Additional file 3: of Differential sexual network connectivity offers a parsimonious explanation for population-level variations in the prevalence of bacterial vaginosis: a data-driven, model-supported hypothesis

description: The Netlogo model of BV transmission. (NLOGO 30 kb)
DOI: 10.7284/133372
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise FK190529 using a Hawaii UHDAS instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577108
title: Additional file 3: of Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid

description: Results of DESeq2. Logarithm of fold-change, raw p-value, and adjusted p-value after FDR correction are listed. (XLSX 682 kb)
DOI: 10.7284/133373
title: Expendable Probe data collected during research cruise FK190529 using a Turo Quoll instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577099
title: Additional file 7: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S6. Gene list from the Light Yellow module. The table contains the Ensembl gene identification, gene symbol and gene description of the entire list of genes from the Light Yellow module. (XLS 38 kb)
DOI: 10.6084/m9.figshare.7577102
title: Additional file 2: of Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid

description: CPM in exoRNA-seq. CPM values for all genes and specimens generated from exoRNA-seq are listed. (XLSX 2194 kb)
DOI: 10.7284/133374
title: Fluorometer data collected during research cruise FK190529 using a WET Labs ECO-FLNTU instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577093
title: Additional file 1: of Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid

description: Mapping profile of exoRNA-seq. Mapping profile of exoRNA-seq reads to human genome reference B37.3 are summarized. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7577102.v1
title: Additional file 2: of Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid

description: CPM in exoRNA-seq. CPM values for all genes and specimens generated from exoRNA-seq are listed. (XLSX 2194 kb)
DOI: 10.6084/m9.figshare.7577099.v1
title: Additional file 7: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S6. Gene list from the Light Yellow module. The table contains the Ensembl gene identification, gene symbol and gene description of the entire list of genes from the Light Yellow module. (XLS 38 kb)
DOI: 10.6084/m9.figshare.7577090
title: Additional file 6: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S5. Gene list from the Ivory module. The table contains the Ensembl gene identification, gene symbol and gene description of the entire list of genes from the Ivory module. (XLS 28 kb)
DOI: 10.6084/m9.figshare.7577093.v1
title: Additional file 1: of Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid

description: Mapping profile of exoRNA-seq. Mapping profile of exoRNA-seq reads to human genome reference B37.3 are summarized. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7577090.v1
title: Additional file 6: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S5. Gene list from the Ivory module. The table contains the Ensembl gene identification, gene symbol and gene description of the entire list of genes from the Ivory module. (XLS 28 kb)
DOI: 10.7284/133375
title: GNSS (Global Navigation Satellite System) data collected during research cruise FK190529 using a C&C C-Nav 3050 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577084
title: Additional file 5: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S4. KEGG Pathways (FDR
DOI: 10.6084/m9.figshare.7577084.v1
title: Additional file 5: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S4. KEGG Pathways (FDR
DOI: 10.7284/133376
title: Gyrocompass data collected during research cruise FK190529 using a Raytheon STD 22 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577075
title: Additional file 4: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S3. Functional enrichment analysis from the gene list of the Salmon module, performed by DAVID v6.8 (FDR
DOI: 10.6084/m9.figshare.7577075.v1
title: Additional file 4: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S3. Functional enrichment analysis from the gene list of the Salmon module, performed by DAVID v6.8 (FDR
DOI: 10.7284/133368
title: INS (Inertial Navigation System) data collected during research cruise FK190529 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577066
title: Additional file 3: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S2. Functional enrichment analysis from the gene list of the Green Yellow module, performed by DAVID v6.8 (FDR
DOI: 10.6084/m9.figshare.7577060
title: Additional file 1: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S1. Test of means (t-test) of backfat thickness (BFT) and ribeye area (REA) between groups with High (H) and Low (L) genomic estimated breeding values (GEBV) for REA and BFT in the Longissimus dorsi muscle of Nelore steers. (XLS 35 kb)
DOI: 10.6084/m9.figshare.7577066.v1
title: Additional file 3: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S2. Functional enrichment analysis from the gene list of the Green Yellow module, performed by DAVID v6.8 (FDR
DOI: 10.7284/133371
title: INS (Inertial Navigation System) data collected during research cruise FK190529 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577054
title: Additional file 9 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Comparison between CoMetGeNe and C3Part/Isofun. Both programs were executed on the genome and metabolic pathways of Escherichia coli, without skipping any genes or reactions. (ZIP 2853 kb)
DOI: 10.6084/m9.figshare.7577060.v1
title: Additional file 1: of Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

description: Table S1. Test of means (t-test) of backfat thickness (BFT) and ribeye area (REA) between groups with High (H) and Low (L) genomic estimated breeding values (GEBV) for REA and BFT in the Longissimus dorsi muscle of Nelore steers. (XLS 35 kb)
DOI: 10.7284/133377
title: INS (Inertial Navigation System) data collected during research cruise FK190529 using a Kongsberg Seapath 320 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577048
title: Additional file 7 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: List of 35 reactions in a trail obtained for Streptococcus pneumoniae (snd) in the fatty acid biosynthesis pathway (snd00061). The list includes the R numbers of the reactions, the reaction definitions, and the corresponding genes in S. pneumoniae. (XLS 12 kb)
DOI: 10.6084/m9.figshare.7577054.v1
title: Additional file 9 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Comparison between CoMetGeNe and C3Part/Isofun. Both programs were executed on the genome and metabolic pathways of Escherichia coli, without skipping any genes or reactions. (ZIP 2853 kb)
DOI: 10.6084/m9.figshare.7577045
title: Additional file 6 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Statistics per species for the 50 species in TableÂ 2. The included statistics are the total number of genes, the number and percentage of enzyme-coding genes, the number of pathways, the number of trails obtained with CoMetGeNe, average and median trail span, the number of trails of span 1â 3, the number of trails of span 4â 10, and the number of trails of span 11 or higher. (XLS 20 kb)
DOI: 10.6084/m9.figshare.7577051
title: Additional file 8 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Execution times for the 50 bacterial species in TableÂ 2. For each of the 50 species, the total running time is indicated as well as run times for all combinations of gap parameters Î´G and Î´D ranging from 0 to 3. (XLS 27 kb)
DOI: 10.7284/133369
title: Meteorological Station data collected during research cruise FK190529 using a Gill MetPak Pro instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577045.v1
title: Additional file 6 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Statistics per species for the 50 species in TableÂ 2. The included statistics are the total number of genes, the number and percentage of enzyme-coding genes, the number of pathways, the number of trails obtained with CoMetGeNe, average and median trail span, the number of trails of span 1â 3, the number of trails of span 4â 10, and the number of trails of span 11 or higher. (XLS 20 kb)
DOI: 10.6084/m9.figshare.7577048.v1
title: Additional file 7 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: List of 35 reactions in a trail obtained for Streptococcus pneumoniae (snd) in the fatty acid biosynthesis pathway (snd00061). The list includes the R numbers of the reactions, the reaction definitions, and the corresponding genes in S. pneumoniae. (XLS 12 kb)
DOI: 10.6084/m9.figshare.7577051.v1
title: Additional file 8 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Execution times for the 50 bacterial species in TableÂ 2. For each of the 50 species, the total running time is indicated as well as run times for all combinations of gap parameters Î´G and Î´D ranging from 0 to 3. (XLS 27 kb)
DOI: 10.7284/133370
title: Meteorological Station data collected during research cruise FK190529 using a Gill MetPak Pro instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577036
title: Additional file 5 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Input pathways. Metabolic pathways for the selected bacterial species in KGML format, archived. All pathways were retrieved from KEGG June 1, 2018. (ZIP 199,117 kb)
DOI: 10.6084/m9.figshare.7577033
title: Additional file 4 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Trail finding results for the 50 species in TableÂ 2. Trail finding has been performed for all combinations of gap parameters Î´G (allowing to skip genes) and Î´D (allowing to skip reactions) ranging from 0 to 3. (ZIP 5466 kb)
DOI: 10.6084/m9.figshare.7577033.v1
title: Additional file 4 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Trail finding results for the 50 species in TableÂ 2. Trail finding has been performed for all combinations of gap parameters Î´G (allowing to skip genes) and Î´D (allowing to skip reactions) ranging from 0 to 3. (ZIP 5466 kb)
DOI: 10.7284/133379
title: Meteorological Station data collected during research cruise FK190529 using a Gill MetPak Pro instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577036.v1
title: Additional file 5 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Input pathways. Metabolic pathways for the selected bacterial species in KGML format, archived. All pathways were retrieved from KEGG June 1, 2018. (ZIP 199,117 kb)
DOI: 10.7284/133380
title: Multibeam Echosounder data collected during research cruise FK190529 using a Kongsberg EM302 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133382
title: Multibeam Echosounder data collected during research cruise FK190529 using a Kongsberg EM710 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577012
title: Additional file 16 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Statistics per species for five eukaryotic species. Trail finding was conducted on Saccharomyces cerevisiae, Schizosaccharomyces pombe, Caenorhabditis elegans, Danio rerio, and Mus musculus, with gap parameters Î´G and Î´D ranging from 0 to 3. The included statistics are the same as for Additional fileÂ 6. (XLS 7 kb)
DOI: 10.6084/m9.figshare.7577012.v1
title: Additional file 16 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Statistics per species for five eukaryotic species. Trail finding was conducted on Saccharomyces cerevisiae, Schizosaccharomyces pombe, Caenorhabditis elegans, Danio rerio, and Mus musculus, with gap parameters Î´G and Î´D ranging from 0 to 3. The included statistics are the same as for Additional fileÂ 6. (XLS 7 kb)
DOI: 10.6084/m9.figshare.7577006
title: Additional file 15 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Statistics per species for completely assembled representative bacterial genomes present in NCBI Genomes. The included statistics are the same as for Additional fileÂ 6. (XLS 238 kb)
DOI: 10.7284/133363
title: Radiometer data collected during research cruise FK190529 using a Biospherical QSR-2200 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7577006.v1
title: Additional file 15 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Statistics per species for completely assembled representative bacterial genomes present in NCBI Genomes. The included statistics are the same as for Additional fileÂ 6. (XLS 238 kb)
DOI: 10.7284/133364
title: Radiometer data collected during research cruise FK190529 using a Eppley RAD instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7576994
title: Additional file 14 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Trail finding results for completely assembled representative bacterial genomes present in NCBI Genomes. Of the 1,545 fully assembled representative bacterial genomes in NCBI, corresponding entries have been identified in KEGG for 1,467 species, for which trail finding has been performed for all combinations of gap parameters Î´G and Î´D ranging from 0 to 3. This additional file is available from https://doi.org/10.6084/m9.figshare.7288769 . (GZ 178,532 kb)
DOI: 10.6084/m9.figshare.7576994.v1
title: Additional file 14 of CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

description: Trail finding results for completely assembled representative bacterial genomes present in NCBI Genomes. Of the 1,545 fully assembled representative bacterial genomes in NCBI, corresponding entries have been identified in KEGG for 1,467 species, for which trail finding has been performed for all combinations of gap parameters Î´G and Î´D ranging from 0 to 3. This additional file is available from https://doi.org/10.6084/m9.figshare.7288769 . (GZ 178,532 kb)
DOI: 10.7284/133365
title: Radiometer data collected during research cruise FK190529 using a Biospherical QSR-2200 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133367
title: Speedlog data collected during research cruise FK190529 using a SKIPPER EL244 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7576970
title: Additional file 4: of MicroRNAs in ovarian follicular atresia and granulosa cell apoptosis

description: Table S4. (XLS 82 kb)
DOI: 10.6084/m9.figshare.7576970.v1
title: Additional file 4: of MicroRNAs in ovarian follicular atresia and granulosa cell apoptosis

description: Table S4. (XLS 82 kb)
DOI: 10.7284/133384
title: SSV (Sound Speed Velocimeter) data collected during research cruise FK190529 using a Valeport MiniSVS instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7576958
title: Additional file 3: of MicroRNAs in ovarian follicular atresia and granulosa cell apoptosis

description: Table S3. (XLS 198 kb)
DOI: 10.6084/m9.figshare.7576958.v1
title: Additional file 3: of MicroRNAs in ovarian follicular atresia and granulosa cell apoptosis

description: Table S3. (XLS 198 kb)
DOI: 10.6084/m9.figshare.7576949
title: Additional file 2: of MicroRNAs in ovarian follicular atresia and granulosa cell apoptosis

description: Table S2. (XLS 85 kb)
DOI: 10.7284/133396
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise FK190612 using a Hawaii UHDAS instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7576949.v1
title: Additional file 2: of MicroRNAs in ovarian follicular atresia and granulosa cell apoptosis

description: Table S2. (XLS 85 kb)
DOI: 10.7284/133397
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise FK190612 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7576943
title: Additional file 1: of MicroRNAs in ovarian follicular atresia and granulosa cell apoptosis

description: Table S1. (XLSX 13.9 kb)
DOI: 10.6084/m9.figshare.7576943.v1
title: Additional file 1: of MicroRNAs in ovarian follicular atresia and granulosa cell apoptosis

description: Table S1. (XLSX 13.9 kb)
DOI: 10.7284/133398
title: Expendable Probe data collected during research cruise FK190612 using a Turo Quoll instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7576931
title: Additional file 4: of Reduced bonobo MHC class I diversity predicts a reduced viral peptide binding ability compared to chimpanzees

description: Statistic results of the “population”- and “individual”-level comparison (Microsoft Excel worksheet .xlsx): Table showing the statistic results of the “population” -level and “individual”-level comparisons for the analysis of the number of bound peptides for each of the particular comparisons. (XLSX 11 kb)
DOI: 10.7284/133399
title: Fluorometer data collected during research cruise FK190612 using a WET Labs ECO-FLNTU instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7576931.v1
title: Additional file 4: of Reduced bonobo MHC class I diversity predicts a reduced viral peptide binding ability compared to chimpanzees

description: Statistic results of the “population”- and “individual”-level comparison (Microsoft Excel worksheet .xlsx): Table showing the statistic results of the “population” -level and “individual”-level comparisons for the analysis of the number of bound peptides for each of the particular comparisons. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7576922
title: Additional file 3: of Reduced bonobo MHC class I diversity predicts a reduced viral peptide binding ability compared to chimpanzees

description: Frequency of peptide sequences (Microsoft Excel worksheet .xlsx): Table shows the frequency of an identical peptide sequence in the dataset with the corresponding number of peptides with this particular sequence. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7576922.v1
title: Additional file 3: of Reduced bonobo MHC class I diversity predicts a reduced viral peptide binding ability compared to chimpanzees

description: Frequency of peptide sequences (Microsoft Excel worksheet .xlsx): Table shows the frequency of an identical peptide sequence in the dataset with the corresponding number of peptides with this particular sequence. (XLSX 14 kb)
DOI: 10.7284/133400
title: GNSS (Global Navigation Satellite System) data collected during research cruise FK190612 using a C&C C-Nav 3050 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition