cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pc5dq3
title: Occurrence Download

description: A dataset containing 1809483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Puccinia sesleriae-caeruleae E.Fisch., 1904, Tragopogon pratensis L., Trifolium alpestre L., Agrostis canina L., Agrostis tenuis T.Bastard, Angelica sylvestris L., Betonica officinalis L., Carex hartmanii Cajander, Carex pallescens L., Carex panicea L., Carex umbrosa Host)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1809483 records from 2530 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007459-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rnvy5d
title: Occurrence Download

description: A dataset containing 1246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.10_1",
 "TaxonKey is Strigidae"
 ]
}

 The dataset includes 1246 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001003-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9yewbf
title: Occurrence Download

description: A dataset listing the 18242 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((32.17166 -4.87833,38.14492 -4.87833,38.14492 -0.69318,32.17166 -0.69318,32.17166 -4.87833))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 18242 records were derived from 440 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000969-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25043717
title: Bioinformatics and Network Pharmacology Explore the Role of Immune Cells in the Occurrence of Anti-Vascular Endothelial Growth Factor (VEGF) Resistance in Patients with Neovascular Age-Related Macular Degeneration(nAMD) and the Application of Complementary Medicine Treatment

description: This study explores the immune cells’ role in anti-VEGF resistance in nAMD patients, and the potential of Zi-Yin-Jiang-Huo-Tang (ZYJHT), a Traditional Chinese Medicine formula, as complementary therapy. Aqueous humor proteomics data from 10 nAMD patients with anti-VEGF resistance and 10 nAMD patients without anti-VEGF resistance were analyzed, investigating immune cells’s role in anti-VEGF resistance and its underlying mechanism. Network pharmacology methods are employed to analyze the active ingredients in ZYJHT that contribute to therapeutic effects and their mechanisms. Real-time PCR (polymerase chain reaction) was used to detect changes in the expression of SOD1 (superoxide dismutase 1) after treatment with compounds targeting SOD1 in ARPE-19 cells. nAMD patients with anti-VEGF resistance showed enhancement of biological processes linked to the positive regulation of immune function, along with decreased cellular resistance to oxidative stress. Infiltration of B cells memory, plasma cells, CD8<sup>+</sup>and γδ-T cells were higher in nAMD patients with anti-VEGF resistance. SOD1 was identified as a hub gene in the occurrence of anti-VEGF resistance and a core therapeutic target of ZYJHT, negatively correlated with B and T cell infiltration. Compounds diosgenin, naringenin, and liquiritin in ZYJHT can bind to SOD1 and upregulating SOD1 expression in ARPE-19 cells.
DOI: 10.6084/m9.figshare.25043717.v1
title: Bioinformatics and Network Pharmacology Explore the Role of Immune Cells in the Occurrence of Anti-Vascular Endothelial Growth Factor (VEGF) Resistance in Patients with Neovascular Age-Related Macular Degeneration(nAMD) and the Application of Complementary Medicine Treatment

description: This study explores the immune cells’ role in anti-VEGF resistance in nAMD patients, and the potential of Zi-Yin-Jiang-Huo-Tang (ZYJHT), a Traditional Chinese Medicine formula, as complementary therapy. Aqueous humor proteomics data from 10 nAMD patients with anti-VEGF resistance and 10 nAMD patients without anti-VEGF resistance were analyzed, investigating immune cells’s role in anti-VEGF resistance and its underlying mechanism. Network pharmacology methods are employed to analyze the active ingredients in ZYJHT that contribute to therapeutic effects and their mechanisms. Real-time PCR (polymerase chain reaction) was used to detect changes in the expression of SOD1 (superoxide dismutase 1) after treatment with compounds targeting SOD1 in ARPE-19 cells. nAMD patients with anti-VEGF resistance showed enhancement of biological processes linked to the positive regulation of immune function, along with decreased cellular resistance to oxidative stress. Infiltration of B cells memory, plasma cells, CD8<sup>+</sup>and γδ-T cells were higher in nAMD patients with anti-VEGF resistance. SOD1 was identified as a hub gene in the occurrence of anti-VEGF resistance and a core therapeutic target of ZYJHT, negatively correlated with B and T cell infiltration. Compounds diosgenin, naringenin, and liquiritin in ZYJHT can bind to SOD1 and upregulating SOD1 expression in ARPE-19 cells.
DOI: 10.15468/dl.wwr7g2
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.18_1",
 "TaxonKey is Felidae"
 ]
}

 The dataset includes 306 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001005-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3bdx2s
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Latrodectus elegans Thorell, 1898"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001004-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xg36zv
title: Occurrence Download

description: A dataset containing 1512792 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is MEX.18_1"
 ]
}

 The dataset includes 1512792 records from 631 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000957-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ds7cye
title: Occurrence Download

description: A dataset containing 181 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Galeottia A.Rich."
 ]
}

 The dataset includes 181 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001006-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zb7juw
title: Occurrence Download

description: A dataset containing 699 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichonephila antipodiana (Walckenaer, 1841)"
 ]
}

 The dataset includes 699 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001007-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhhj3z
title: Occurrence Download

description: A dataset containing 278 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microlophus stolzmanni (Steindachner, 1891)"
 ]
}

 The dataset includes 278 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001008-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fktc6k
title: Occurrence Download

description: A dataset containing 12798 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.18_1",
 "TaxonKey is Strigidae"
 ]
}

 The dataset includes 12798 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001009-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhgbke
title: Occurrence Download

description: A dataset containing 517195 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is MEX.6_1"
 ]
}

 The dataset includes 517195 records from 689 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000955-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/wwk66dn2vt.1
title: coral permeability

description: details for permeability, connectivity...
DOI: 10.17632/nhf6pbzc9d.1
title: Entry of taste precursor cells into taste bud

description: Keratin 14-positive progenitors were labeled with tdTomato. Taste buds were tracked over time and the labeled cells were quantified as they entered the taste bud.
DOI: 10.15468/dl.7me9ub
title: Occurrence Download

description: A dataset containing 8941 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vultur gryphus Linnaeus, 1758"
 ]
}

 The dataset includes 8941 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004398-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/v6k2vh2hfj.1
title: A Dissection of the Inter-Model Spread of the Aerosol Direct Radiative Effect in CMIP6 Models

description: This dataset contains the necessary code and processed data for paper: Yu, Q., & Huang, Y. (2023). A dissection of the inter-model spread
of the aerosol direct radiative effect in CMIP6 models. Geophysical Research Letters, 50, e2023GL105112. https://doi. org/10.1029/2023GL105112). 

The data include the following data: 
1) The sensitivity of Aerosol Direct Radiative Effect (ADRE) to key predictors (e.g. scattering aerosol optical depth) trained by regression model based on selected CMIP6 model.
2) The predicted ADRE and its predictor field. This enables readers to build the regression model.
3) The decomposition results from ADRE intermodel spread for selected models.
4) Codes and data to reproduce figures in the paper.
DOI: 10.17632/j5rffs3hy8.1
title: BioAuxdataset: a dataset of ground-dwelling nocturnal fauna for object detection and classification

description: The study of nocturnal fauna living in the soil is a challenging research task due to its multiple implications in different fields such as pesticide use control, crop yield prediction or plant disease identification. 
BioAuxdataset is the synthesis of hundreds of gigabytes of images taken in the field of insects and plant auxiliaries over several years. 
7 common species of ground-dwelling nocturnal fauna are represented: ground beetles, mice, opilion, slugs, shrews, small slugs and worms.
BioAuxdataset consists of a directory of 7470 jpg images and their corresponding 7470 xml annotation files. 
BioAuxdatset is available in the rar compressed format and its images are separated into two different directories: non-augmented images and augmented images.
The objectives of the dataset range from monitoring the number of organisms and their characteristics (size, development stage) to early detection of plant diseases for more environmentally-friendly precision agriculture.
DOI: 10.17632/jn95j97cd8.2
title: Zhou et al Mol Cell

description: Original data used to creat the manuscript figures. The data is mainly original blots.
DOI: 10.15468/dl.cn2dpz
title: Occurrence Download

description: A dataset containing 14558 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Issue is one of (Geodetic datum assumed WGS84, Country derived from coordinates, Continent derived from coordinates)",
 "TaxonKey is Pinus cembra L."
 ]
}

 The dataset includes 14558 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004399-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/hbk92j6s39.1
title: In-Silico mechanistic analysis of adsorption of Iodinated Contrast Media agents on Graphene surface

description: We include:
File (a): the input files for the 24 Iodinated Contrast Media agents involved in this study (in Mol2 file format) as well as the monolayer graphene structure (in CIF file format). 
File (b): Herein, for the QSAR analysis with our model optimization and model identification criteria we have added a Python code (Jupiter Notebook file in .ipynb file format). The guidelines mentioned in the markdowns of the Python code.
DOI: 10.17632/ff6xj7zpw8.1
title: 9-HODE and 9-HOTrE alter mitochondrial metabolism and triglyceride levels in HepG2 cells

description: Non-Alcoholic Fatty Liver Disease (NAFLD) is a rising problem that often precedes other adverse health outcomes. 9-HODE produced from linoleic acid (LA, 18:2, n-6) and 9-HOTrE from alpha-linolenic acid (ALA, 18:3, n-3) are oxylipins are produced by CYP2B6 and 9-HODE was associated with reduced obesity and metabolic disease, but increased steatosis in an earlier study. Changes in mitochondrial metabolism, triglyceride accumulation, and PPAR activation were determined in HepG2 cells following treatment with 9-HODE or 9-HOTrE. 9-HOTrE, but not 9-HODE, perturbed energy metabolism by increasing spare respiratory capacity, non-glycolytic acidification and glutamine metabolism, and decreasing palmitate oxidation. 9-HODE and 9-HOTrE increased triglycerides.
DOI: 10.17632/xmxrkzdrgf.1
title: Mote Carlo Data

description: The data contains the measured temperatures in the refrigerators and scenarios of temperature fluctuations together with Monte Carlo simulation of L. monocytogenes growth, based on Baranyi Roberts model.
DOI: 10.17632/gh2nfyyknj.1
title: Datasets on agromorphological characters and distribution of cassava accessions cultivated in South-West and North-Central regions of Nigeria.

description: The dataset is provided as an Excel file comprising of three sheets, each containing distinct sets of information. These sheets collectively offer comprehensive insights into agronomic characteristics gathered from preliminary yield trials of cassava accessions collected during an epidemiological survey for cassava mosaic diseases in Nigeria. The dataset encompasses data from 470 cassava accessions meticulously collected from 290 fields situated across the south-western and north-central regions of Nigeria. The first sheet within the Excel document presents pre-harvest data, encompassing different traits observed prior to the harvest stage. These traits serve as crucial indicators, offering valuable insights into the growth and development patterns exhibited by the cassava accessions throughout experimental phase. The second sheet contains harvest data, which provides detailed information regarding above-ground biomass and root characteristics of the cassava accessions investigated. This data offers a comprehensive understanding of the yield potential and root quality associated with each accession. Contained within the third sheet is metadata, providing insights into the comprehensive overview and detailed description of all variables measured throughout the trial. This metadata serves as a valuable reference tool, enhancing the interpretability and utility of the dataset by elucidating the significance and context of each measured variable.
DOI: 10.17632/xs9sjdgzvc.1
title: Data for Parker et al The Effect of Experimentally Induced Cognitive Fatigue on Energy Intake Among Youth With and Without Recent Reported Dietary Restraint

description: Underlying data for Parker et al, The Effect of Experimentally Induced Cognitive Fatigue on Energy Intake Among Youth With and Without Recent Reported Dietary Restraint. An SPSS dataset and syntax file are submitted.
DOI: 10.17632/wgyrgt7n5j.1
title: Mechanical testing data of "3D-Printed PEEK/Silicon Nitride Scaffolds with Triply Periodic Minimal Surface Structure for Spinal Fusion Implants"

description: Mechanical testing data of "3D-Printed PEEK/Silicon Nitride Scaffolds with Triply Periodic Minimal Surface Structure for Spinal Fusion Implants".
DOI: 10.17632/z6tf3k39nc.1
title: Data of benthic and planktonic foraminifera since Mid-Pleistocene (MIS 7) in the Campos Basin slope, Eastern Brazil

description: Dataset of benthic and planktonic foraminifera since Mid-Pleistocene (MIS 7) from Campos basin slope, South Atlantic. This is tabular data and graphic images containing the core profile of GL-39 (12.8 m length, 22º 35’ 48.51” S and 39º 59’ 36.67” W, drilled at 1475 m water depth), data from the isotopic analysis, taphonomy, relative abundance from main species and shallow environments species, ecological indexes, Simper analysis results, comparison among Epistominella exigua, Globocassidulina crassa and hallow environments species, a summary of the data, and systematics of main species.
DOI: 10.17632/6bknwxdbjg.1
title: Thermal structure beneath the Mt. Changbai Volcanic Area, northeastern Asia: New insights from temperature logging and numerical modeling

description: 1. Temperature logs
The well temperature was measured by a cable system consisting of a thermistor (max. temperature 350 °C) and a 5000-m cable. This system is manufactured by Pioneer Petrotech Services, Canada, and allows the temperature to be continuously recorded with a sensitivity of 0.01 C, a limiting accuracy of 0.1 C and a depth interval of 0.05 m. The four wells had sufficiently long shut-in times (the time elapsed after the cessation of drilling) for the temperature to recover. Well C-1, approximately 7 km north of the caldera center, is almost within the Tianchi caldera, whereas the other three wells are approximately 20 km to 60 km from the caldera. The measured data are listed in Dataset s1-s4.
2. Thermophysical parameters 
We measured the thermal conductivities and concentrations of heat-producing elements (Th, U, and K) in 19 core samples (from wells C-2 and C-3) and 12 outcrop samples (near wells C-1 and C-4) extracted from the representative lithologies of the four wells. The measured data are listed in Dataset s5.

Dataset S1. The temperature logs of C-1. 
Dataset S2. The temperature logs of C-2. 
Dataset S3. The temperature logs of C-3. 
Dataset S4. The temperature logs of C-4. 
Dataset S5. The measured thermal conductivity, U-Th-K concentration and heat production.
DOI: 10.17632/bm6tct36hp.1
title: Sperm proteome and sperm parameters of captive Amazon squirrel monkeys (Saimiri collinsi Osgood, 1916) during nonfatted and fatted condition

description: The present study evaluates the sperm proteome after the dilution of the seminal coagulum and the sperm parameters during nonfatted and fatted conditions in Saimiri collinsi (Amazon squirrel monkey). Thirty-five semen samples were collected by electroejaculation, and extracted proteins were trypsin-digested, desalted, and analyzed by LC-MS/MS. The Mascot software searches were performed on an in-house server against an online Saimiri boliviensis boliviensis database. Label-free LC-MS/MS allowed the identification of 1,161 proteins in sperm samples. 
Out of the 65 proteins that were differently expressed. The most important biological processes related to the upregulation of in animals of nonfatted condition were cellular processes and metabolic processes. The main molecular functions of these proteins were determined to be catalytic activity and binding. Sperm proteins were mainly defined as cellular anatomical entities and protein complexes, as cellular components. The protein classes identified in the study included metabolite interconversion enzyme, transport, chaperone, and protein modifying enzyme. In fatted condition, the most important biological processes related to the upregulation proteins were cellular processes, metabolic processes, and localization. The main molecular functions of these proteins were determined to be binding, catalytic activity, ATP-dependent activity, and transport activity. Regarding cellular components, the proteins were mainly defined as cellular anatomical entities and protein complexes. The study identified protein classes included cytoskeletal protein, metabolite interconversion enzyme, transporter, RNA metabolism protein, chaperone and Protein modifying enzyme. 
After analyzing the data using DAVID, we discovered that 20 genes were in nonfatted and 25 genes in fatted conditions. In nonfatted conditions associated with biological processes, molecular functions such as chaperone and cellular components such as cilium, flagellum, and cell projection. In fatted conditions, proteins were highly represented in biological processes such as fertilization, spermatogenesis, and transport, also involved in molecular functions such as chaperone and motor protein, and cellular components such as dynein, cytoskeleton, proteasome, cell projection, and cytoplasm. This represents the most comprehensive overview of the sperm proteome in the Amazon squirrel monkey sperm and will contribute to the elucidation of the underlying mechanisms associated with sperm function.
DOI: 10.17632/cthpkk4dp9.1
title: Article Data: Characterization of a HPHT Boron Ion-Implanted Diamond X-ray Mirror following High Vacuum Annealing

description: This collection contains processed data files to accompany the paper "Characterization of a HPHT Boron Ion-Implanted Diamond X-ray Mirror following High Vacuum Annealing" by R. A. Margraf-O’Neal, M. D. Ynsa,J. Krzywinski, M. L. Ng, J. P. MacArthur, F. Ke,Y. Zhong, S.-K. Mo, P. Pradhan, R. Robles, A. Robert, T. Sato, D. Zhu, A. Halavanau, G. Marcus. This paper will be published in "Diamond and Related Materials" in 2024.

Bdoped_Figs.ipynb is a Jupyter Notebook File that can be used to generate the figures in the paper.

Each folder contains the processed data files that were used to generate the corresponding figures. Please use these files by running Bdoped_Figs.ipynb.

For convenience, the 2D data represented in the figures of the paper can also be found in the Excel file "2D Source Data.xlsx."
DOI: 10.17632/45r6ps4r68.1
title: Data for labor market concentration using Lightcast (formerly Burning Glass Technologies)

description: Using the job vacancy data from Lightcast from 2007Q1 to 2021Q2 (2008 and 2009 data are not available), we measure labor market concentration by using the Herfindahl Hirschman Index (HHI) in labor markets defined by the occupation (6-digit SOC), commuting zone, and quarterly level. The HHI is calculated based on the share of vacancies of all the firms that post vacancies in that market. It is the sum of vacancies by a given firm in a given market and year-quarter divided by the total vacancies of all firms posted on the website in that market and year-quarter. Data includes information on year-quarter, 6-digit SOC, commuting Zone, lower bound HHI, and higher bound HHI.