cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/djj6fmbjzs
title: The impact of collection portfolio expansion on key performance indicators of the Dutch recycling system for Post-Consumer Plastic Packaging Waste, a comparison between 2014 and 2017

description: This dataset corresponds to the paper: “The impact of collection portfolio expansion on key performance indicators of the Dutch recycling system for Post-Consumer Plastic Packaging Waste, a comparison between 2014 and 2017” (2019). The dataset includes two folders, one for the MFA model for 2017 and one for the model results of both the 2014 and 2017 model. Folder 1 (Tables A to I) contains the model description. Tables A, B and C list general input data for the model, such as gross collected amounts and the sorting distribution. Tables D, E, F and G relates to compositional data of separately collected post-consumer plastic packaging waste (PCPPW). In tables D and E the measured average compositions of collected materials and sorted products are listed (input STAN). The output of STAN for collected PCPPW and sorted products made therefrom, are listed in tables F and G. Tables H and I list the compositional data of PCPPW that was mechanically recovered from mixed municipal solid waste (MSW). In table H the measured average compositions of mechanically recovered PCPPW and sorted products made therefrom are listed (input STAN). The output data of STAN for mechanical recovered PCPPW and the sorted products made therefrom are listed in table I. Folder 2 (Tables J to W) shows all modelling results for 2014 and 2017. Table J lists the average gross composition of the separately collected PCPPW. Table K lists the collection fates of all the packaging types. Table L lists the sorting fates of all packaging types for separately collected PCPPW. Table M lists the sorting fates of all packaging types for mechanical recovered PCPPW. Table N lists the End-of-Life fates of all packaging types. Table O lists the average compositions of sorted products and compares those to the DKR sorting specifications to verify general compliance. In order to verify compliance of the sorted products, several interpretations had to be made to translate our list of packaging types in the list of criteria named in the specifications. The ‘benefit of the doubt’ principle was applied when required in this translation process. Table P lists the total amounts of washed milled goods produced. Table Q lists the recovered masses for the mechanical recycling process of the separately collected and sorted PCPPW. Table R lists the recovered masses for the mechanical recycling process of the mechanical recovered and sorted PCPPW. Table S lists the material composition of the produced washed milled goods. Table T and U list the share of desired polymers in the produced washed milled goods made from either separately collected and sorted or mechanical recovered and sorted PCPPW, respectively. Table V and W list the origin of contaminants in the produced washed milled goods made from either separately collected and sorted or mechanical recovered and sorted PCPPW, respectively.
DOI: 10.17632/jdftfbpvkn
title: Collaborative multidimensional approach to improve the resolution of depression in primary care in Chile

description: Documents required for a Clinical Trial Protocol (project acceptance letter from the funding institution, the informed consent documents and Ethics Committee approval and the SPIRIT checklist.
The protocol will evaluate the effectiveness of a collaborative multidimensional approach to improve the resolution of depression in primary care in Chile, a cluster randomized trial in adults from the Maule region.
DOI: 10.6084/m9.figshare.14827740.v1
title: Supplementary Material for: Downregulation of <b><i>ITM2A</i></b> Gene Expression in Macrophages of Patients with Ankylosing Spondylitis

description: <b><i>Objectives:</i></b> Ankylosing spondylitis (AS) is a rheumatic disorder that is mostly determined by genetic and environmental factors. Given the known importance of macrophage in AS pathogenesis, we investigated the transcriptional profile of macrophage cells in the disease. <b><i>Methods and Results:</i></b> Two approaches of differential expression and subsequently, weighted gene co-expression network analysis was utilized to analyze a publicly available microarray dataset of macrophages. Integral membrane protein 2A (<i>ITM2A</i>) was among the most significant genes with a decreased trend in the common results of both methods. In order to confirm the finding, the expression of <i>ITM2A</i> was evaluated in monocyte-derived (M2-like) and M1 macrophages obtained from 14 AS patients and 14 controls. Macrophages were differentiated from whole-blood separated monocytes by 7 days incubating with macrophage colony-stimulating factor and then macrophages specific markers were verified with the flow cytometer. M1 polarization was induced by IFN-γ and lipopolysaccharide. Finally, relative gene expression analysis by real-time polymerase chain reaction revealed a significant downregulation of the <i>ITM2A</i> gene in both M2 like and M1 macrophages of the AS group compared to the control. <b><i>Conclusion:</i></b> Since <i>ITM2A</i> plays a critical role in osteo- and chondrogenic cellular differentiation, our finding may provide new insights into AS pathogenesis.
DOI: 10.6084/m9.figshare.21917301.v2
title: Spanish MiniPROMS

description: Despite the efforts made throughout the 20th century to develop standardized batteries to measure musical ability, there seems to be no consensus as to what the construct´s gold standard is. The Profile of Music Perception Skills (PROMS, Law and Zentner, 2012) was created with the aim of overcoming all these limitations. The Mini-PROMS (Zentner and Strauss, 2017) is the shortened version of the full battery, which has a much shorter application time of just fifteen minutes. The aim of the present study is to validate the Mini-PROMS battery in a population of Spanish musicians and non-musicians in order to provide useful scales for the development of research in the field of musical skills in the Spanish population. The results show that Mini-PROMS in Spanish is a reliable and valid tool for measuring the musical ability of musicians and non-musicians. Furthermore, this study provides information on the differences between the population of musicians and non-musicians, offering useful scales for comparing the results of an individual with those of his or her reference population.
DOI: 10.6084/m9.figshare.3560343.v1
title: Appendix A. Plot layout for the Climate Extremes Experiment (CEE).

description: Plot layout for the Climate Extremes Experiment (CEE).
DOI: 10.6084/m9.figshare.16571040.v2
title: zhuhai_data_Sep_2021

description: HSR image, POI data, taxi GPS data for Zhuhai UFZ classification project.
DOI: 10.6084/m9.figshare.24152004.v4
title: <b>Epidemiological profiles and causes of sudden deaths of various ages in Ethiopia: an autopsy-based study.</b>

description: <b>Sudden Unexpected Natural Deaths in Ethiopia: Epidemiological Characteristics and Causes at Various Age Groups</b>.
DOI: 10.6084/m9.figshare.24792567.v3
title: Ecological genetics of isolated loach populations indicate compromised adaptive potential

description: Many endangered species live in fragmented and isolated populations with low genetic variability, signs of inbreeding, and small effective population sizes - all features elevating their extinction risk. The flat-headed loach (<i>Oreonectes platycephalus</i>), a small noemacheilid fish, is found widely across southern China, but only in headwaters of hillstreams; as a result, they are spatially isolated from conspecific populations. We surveyed single nucleotide polymorphisms in 16 Hong Kong populations of <i>O. platycephalus</i> to determine whether loach populations from different streams were genetically isolated from each other, showed low levels of genetic diversity and signs of inbreeding, and had small effective population sizes. Estimates of average observed heterozygosity (<i>H</i><sub><em>O</em></sub> = 0.0473), average weighted nucleotide diversity (<i>π</i><sub><em>w</em></sub> = 0.0546) and effective population sizes (<i>N</i><sub><em>e</em></sub> = 10.2 - 129.8) were very low, and several populations showed clear signs of inbreeding as judged from relatedness estimates. The degree of genetic differentiation among populations was very high (average <i>F</i><sub><em>ST</em></sub> = 0.668), even over short geographic distances (&lt; 1.5 km), with strong patterns of isolation by distance. These results suggest that Hong Kong populations of <i>O. platycephalus</i> have experienced strong genetic drift and loss of genetic variability because sea-level rise after the last glaciation reduced connectedness among paleodrainages, isolating populations in headwaters. All this, together with the fact that the levels of genetic diversity and current effective population sizes within <i>O. platycephalus</i> populations are lower than most other freshwater fishes, suggests that they face high extinction risk and limited capacity for future adaptation.The DArT-seq report contains all SNPs among 282 <i>O. platycephalus</i> individuals called by <i>Diversity Arrays Technology Pty Ltd, Australia</i>. Analyses in this study were based on the report using the R package <i>dartR v2.7.2</i>. In addition, <i>.vcf</i> files of each population were attached for analysss conducted by <i>vcftools</i>.
DOI: 10.6084/m9.figshare.5519920.v1
title: data_sharing_tDCS_Giboin.xlsx

description: Effect of tDCS on maximal intensity knee extension fatiguing task.
DOI: 10.60893/figshare.apl.27628983.v1
title: Supporting Information

description: Calculated structural parameters, the relative energy and the symmetry of PE and FE phases, 2D transformation strain matrix from PE to FE states, and the structural evolution of FE-P0{degree sign} under uniaxial strain.
DOI: 10.6084/m9.figshare.1356287.v2
title: Synthetic reads from Stapleton et al. 2015

description: Synthetic long reads assembled from barcoded short reads as described in Stapleton et al. 2015
DOI: 10.6084/m9.figshare.14247431.v2
title: Supplementary material for the article, "Measles Outbreak Investigation Process in Low- and Middle-Income Countries: A Systematic Review of the Methods and Costs of Contact Tracing"

description: Online Resource 1: PRISMA ChecklistThis word document is a completed PRISMA checklist that outlines how the implementation of this systematic review conforms with the stipulated guidelines.<br>Online Resource 2: Article Selection SummaryThis excel workbook provides a summary of the article selection process showing how the inclusion and exclusion criteria were applied when reviewing the title, abstract and full-text of articles obtained from each database search. Also, the number of duplicates and articles resulting from hand searches have been included<br>Online Resource 3: Study Selection Process for each DatabaseSearch results exported from each of the six databases are presented from Table 1 to Table 6 (each table on a separate excel sheet of the workbook). The date on which these searches were done together with reviewers’ decisions have been incorporated.<br>Online Resource 4: Quality Assessment of Included Studies Grouped by Type of Design.Details of how each quality assessment tool was applied to each study have been provided in Tables 1 to 4 (on four separate excel sheets of a workbook), each table containing studies of the same design.<br>Online Resource 5: Risk of Bias AssessmentThis excel workbook contains the assessment of bias (selection, information and confounding) across the studies included for this review.
DOI: 10.6084/m9.figshare.13148117.v11
title: Replication Pack - Impact of Usability Mechanisms

description: Replication Pack for Impact of Usability Mechanisms<br>1. Analysis.R: R code to analyse experiments (Summary statistics).2. Meta-analysis.R: R code to analyse SE family of experiments.3. Baseline.xlsx: Raw data of baseline experiment.4. Replication_1.xlsx: Raw data of Replication #1 of baseline experiment.5. Replication_2.xlsx: Raw data of Replication #2 of baseline experiment.6. Moderators.Rhtml: R code to analyse moderators (gender, age and shopping experience). This code generates an html as a result of the analysis.7. SubjectsBaseline.xlsx: demographic data for baseline experiment.8. SubjectsReplication1.xlsx: demographic data for Replication #1 of baseline experiment.9. SubjectsReplication2.xlsx: demographic data for Replication #2 of baseline experiment.10. GuidelineReplicationPack.pdf: Guidelines for conducting replication (including experimental design, user tasks, metrics, questionnaires, etc).<br>
DOI: 10.6084/m9.figshare.28694384.v4
title: Raw Data and processed data

description: Genome, F1 mouse
DOI: 10.6084/m9.figshare.5280238.v3
title: SQLite database with mouse gene annotations from Mouse Genome Informatics (MGI) at The Jackson Laboratory

description: A SQLite database with two tables: "description" and "genes". The description table includes the URL for the source file. The "genes" table contains the data, with 15 fields including chr (1-19, X, Y, MT), start and stop (in basepairs, GRCm38/mm10 build), source, strand, Name, and type.
DOI: 10.6084/m9.figshare.21493197.v1
title: Supplementary Material for: Increased Focus on Internal Body Sensations Is Associated with Higher Patient-Perceived Severity of Allergic Rhinitis

description: <b><i>Background:</i></b> Monitoring allergic rhinitis (AR) severity with objective biomarkers is important for the clinical management of patients as well as for research purposes. The most commonly used tool for the assessment of AR severity is the Total Nasal Symptom Score (TNSS). Objective biomarkers like skin prick test size or specific IgE levels do not correlate with TNSS. <b><i>Objective:</i></b> We hypothesize that the psychological factors are the missing link between patient-perceived severity of AR and objective biomarkers. <b><i>Method:</i></b> Thirty-nine patients (median age: 34 years; 21 [54%] female) with grass pollen-related AR were enrolled in our study. Patients allergic for perennial allergens and allergens with potentially overlapping seasons including cypress, ash/olive, plane, and nettle families were excluded. Patient-reported outcomes included symptom score, medication scores, combined score, and Juniper Mini Rhinitis Quality of Life Questionnaire (minRQLQ). Psychometric evaluation was performed using 5 different psychological questionnaires that measure 13 different psychological factors. <b><i>Results:</i></b> There was a significant correlation between the symptom score and <i>private body consciousness</i> (<i>r</i> = 0.50, <i>p</i> = 0.001) and <i>neuroticism</i> (<i>R</i> = 0.41 and <i>p</i> = 0.01). There was also a statistically significant correlation between the combined score and <i>private body</i> consciousness (<i>r</i> = 0.49 and <i>p</i> = 0.001) and with <i>perceiving and understanding emotions</i> (<i>r</i> = 0.34 and <i>p</i> = 0.04). The miniRQLQ score had a positive correlation with <i>private body consciousness</i> (<i>r</i> = 0.55 and <i>p</i> = 0.002) and <i>observing</i> (<i>r</i> = 0.42 and <i>p</i> = 0.02). <b><i>Conclusions:</i></b> Our data suggest that patients who are more aware of internal stimuli, as well as those who are highly self-conscious and somatically concerned tend to experience more severe AR symptoms.
DOI: 10.6084/m9.figshare.28740317.v1
title: Plastic-Mulched-Landcover-detection-dataset

description: This paper introduces a multi-source remote sensing image dataset for PML detection. The dataset includes Sentinel-2 remote sensing imagery and Sentinel-1 dual-polarimetric SAR data, along with corresponding PML sample labels.Sentinel-2 data includes the three bands: red (R), green (G), and blue (B). Sentinel-1 data includes four polarimetric covariance C2 matrix parameters were obtained after PolSAR image filtering and three polarimetric scattering characteristic parameters were obtained after H/A/Alpha polarimetric decomposition.
DOI: 10.11583/dtu.28123679.v1
title: Data for the article: The interactions between fishing mortality, age, condition and recruitment in exploited fish populations in the North Sea

description: Data used in van Deurs et al. (2023): https://doi.org/10.1016/j.fishres.2023.106822Data contains annual fishing mortality, maturity ogives, stock numbers at age, and weight at age for each stock (stocks are here identified by ICES stock ID).
DOI: 10.6084/m9.figshare.16945684.v1
title: Raw Data for Fig. 6

description: Raw data for Fig. 6
DOI: 10.6084/m9.figshare.17206931.v1
title: Supplementary Material for: Smartphone-based DIY home microsurgical training with 3D printed microvascular clamps and Japanese noodles

description: We have recently incorporated simple modifications of the konjac flour noodle model to enable DIY home microsurgical training by (i) placing a smartphone on a mug to act as a microscope with at least 3.5-5x magnification, and (ii) rather than cannulating with a 22G needle as described by others, we have found that cannulation with a 23G needle followed by a second pass with an 18G needle will create a lumen (approx. 0.83 mm) without an overly thick and unrealistic “vessel” wall. The current set-up however, did not allow realistic evaluation of anastomotic patency as the noodles became macerated after application of standard microvascular clamps, which also did not facilitate practice of back-wall anastomoses. In order to simulate the actual operative environment as much as possible, we introduced the use of 3D printed microvascular clamps. These were modified from its previous iteration (suitable for use in silastic and chicken thigh vessels) and video recordings were submitted for internal validation by senior surgeons. A “wet” operative field where the knojac noodle lumen can be distended or collapsed, unlike other non-living models, was noted by senior surgeons. With the 3D clamps, the noodle could now be flipped over for back-wall anastomosis and allowed patency testing upon completion as it did not become macerated, unlike that from clinical microvascular clamps. The perceived advantages of this model are numerous. Not only does it comply with the 3Rs of simulation-based training, it can also reduce the associated costs of training by up to a hundred-fold or more when compared to a traditional rat course, and potentially, be extended to low-middle income countries (LMICs) without routine access to microsurgical training for capacity development. That it can be utilised remotely also bodes well with the current limitations on face to-face training due to COVID restrictions and lockdowns.
DOI: 10.6084/m9.figshare.7873175.v2
title: Chromosome 19 human annotations

description: Annotation for chromosome 19
DOI: 10.6084/m9.figshare.11869293.v1
title: Serious adverse event: late neurotropic disease associated with yellow fever vaccine

description: ABSTRACT The yellow fever is a systemic disease that was under control due to the effective campaigns against the vector and promotion of vaccines programs. However, since 1999, outbreaks appeared because of inefficient control of the vector, and led to the need of amplifying the immunization in large scale against the yellow fever virus, and consequently, raising the risk of adverse reactions to the vaccine. We report a case of previously healthy infant, who was referred to our care service, after 3 days with fever, chills, nausea and vomits, he received support therapy and was discharged from the hospital. After 24 hours of supportive measures, he was discharge. The patient returned to our service with general condition decline, strabismus, inability to control of cervical musculature and reduced force of the legs. The patient vaccine had received all vaccines from the calendar, and he was vaccinated for yellow fever 20 days before symptoms. During the hospitalization, liquor was collected, and ceftriaxone and aciclovir were administered. After negative cultures from the liquor, the antibiotics were suspended. The computed tomography of patient’s brain showed no alterations. Research for antibodies against yellow fever was requested, being positive for IgM in the liquor, and confirming the neurotropic disease associated with the yellow fever vaccine. On the fifth day of hospitalization, the patient showed improvement on the strabismus, cervical tonus, and musculature force. On the tenth day of hospitalization, patient showed complete improvement, and his laboratory exams no alterations. Subsequently, patient was discharged. The vaccine against yellow fever is safe, efficient and highly recommended, however it is not completely free from serious adverse reactions, including death.
DOI: 10.6084/m9.figshare.13043429.v1
title: Verrucomicrobia.zip

description: GeneHunt based identification of Glycoside Hydrolases in (completely) sequenced bacterial genomes - retrieved from PATRIC.brc. <br>Ref for GeneHunt: https://www.nature.com/articles/s41598-019-46290-w. <br>File types: SEQ_strain.txt : <br>Fasta formated AA sequence of identified GH in "strain" <br>STAT_stain.txt: Stat for all the Prot. Domain in GHs identified in "strain" <br>G0_strain.pdf: graphical representation of the GHs in the sequenced chromosome of "strain" <br>G1_strain.pdf: graphical representation of all the GHs in the sequenced chromosome of "strain"
DOI: 10.6084/m9.figshare.20436201.v3
title: imgtofmri_analysis_data

description: Data folder including preprocessed fMRI data for analyses associated with the jupyter notebook tutorial for imgtofmri.py. Includes subfolders for analyses associated with the Twinset prediction validation analysis, as well as a folder for the Partly Cloudy analysis.
DOI: 10.6084/m9.figshare.28829693.v4
title: Table S5, PlasmidFinder summary

description: Table S5, PlasmidFinder summaryIdentification of plasmid replicon types was conducted using the Staramr pipeline (v0.11.0) [12], incorporating PlasmidFinder (database version 14.11.2024).
DOI: 10.6084/m9.figshare.19070249.v1
title: Supplementary Material for: Effect of BMI on the thermogenic response to cold exposure and associated changes in metabolism and browning markers in adult humans

description: Introduction. Brown adipose tissue (BAT) serves to produce heat by non-shivering thermogenesis. Activation of BAT increases energy expenditure and is seen as a putative strategy to treat obesity. There is conflicting data on the capacity for cold induced thermogenesis in individuals with higher BMI. Methods. To investigate the effect of BMI on cold-induced stimulation of energy expenditure, changes in the metabolic profile, and the expression of browning markers in subcutaneous white adipose tissue (scWAT), healthy adults (N=173, 50.9 % females) with a median age of 26.0 [Interquartile range (IQR): 23.0;28.0] years and a median BMI of 23.6 [IQR: 21.9;26.6] kg/m² were exposed to short-term mild cold exposure (CE). Resting energy expenditure (REE) was measured by indirect calorimetry and blood sampling was conducted at baseline and after CE. In a subgroup of participants with obesity, subcutaneous abdominal fat biopsies were taken before and after CE. Results. The cold-induced median increase in REE was 74 (IQR: -28; 241) kcal/day (p&lt;0.001). This increase negatively correlated with BMI (p&lt;0.001). Participants with BMI 18.5-24.9 kg/m² displayed a significant median increase of 103 kcal/day (p&lt;0.001), participants with overweight or obesity were not able to increase REE (23, p=0.468 or - 30 kcal/day, p=0.917, respectively). In participants with obesity, expression of Cell death activator (CIDEA) in scWAT after CE was upregulated in females (p=0.034). Conclusions. Persons with overweight and obesity do not increase REE in response to CE, presumably reflecting lower BAT activity. Likewise, the metabolic response to cold is diminished in participants with elevated BMI.
DOI: 10.6084/m9.figshare.7951205.v1
title: gVCF_NA21113

description: 1000 Genomes gVCF mapped to hs37d5 for NA21113. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307