cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/08dc9aaa80fe793616823b284916a390
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (CiPEHR and DryPEHR): Weekly 13C Keeling Plot Signatures of Ecosystem Respiration from CiPEHR, DryPEHR and vegetation removal plots, and auxilliary data, 2015

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. How does warming and water table change impact the phenology of dominant plant species? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming and OTC air warming on CIPEHR plots began in 2008; OTCs and drying on DryPEHR in 2011, though the soil warming effect had legacy since 2008. Vegetation removal was done outside the CiPEHR footprint, in July 2012. All vegetation was clipped at the surface and plots were trenched to 30cm, regrowth was prevented by frequent weeding and by 2015 very little new growth was observed in the plots. Vegetation removal plots were paired with undisturbed, vegetated plots. The data presented here specifically addresses the questions, 1) What is the seasonal signal of ecosystem respiration 13C during the growing season, from snow melt to snow fall,  2) How does permafrost degradation (though soil warming) and moisture trajectory affect the sources of ecosystem respiration, and 3) What is the signal of ecosystem respiration in the absence of vegetation, and how does the signal change seasonally? This data set contains calculated Keeling Plot Reco estimates of 13C used for publication, accompanying environmental and biological data, and R code to calculate Keeling Plot intercepts from high-frequency raw 13C and CO2 data.
DOI: 10.5281/zenodo.1296073
title: Supplementary Table 3 | Old

description: qPCR data for selected genes
DOI: 10.5281/zenodo.1296074
title: Supplementary Table 3 | Old

description: qPCR data for selected genes
DOI: 10.5281/zenodo.1293300
title: Area Dominates Edge In Pointillistic Colour

description: Dataset relative to the following publication:

Koenderink, J, van Doorn, A. & Gegenfurtner, K.R. (2018) Area dominates edge in pointilistic colour. i-Perception, 9(4), 1–41. doi: 10.5281/zenodo.1293301

This is all that is needed to reproduce the figures and the numbers mentioned in the manuscript.<br>
These is also sufficient data to let one rerun the experiments with original instructions and programs and to analyse the results as described in the paper.

All that is needed is to install Processing and Mathematica and edit filenames at various places in the sources (this is really minimal work).

Here is a list of “what there is”:

- Analysis: Has initial analysis of the raw data. These are Mathematica (Wolfram, requires licence, free reader available from Wolfram site) notebooks.

- Data: Contains all raw data, as text files and as CSV summaries.

- Dots: Contains the programs used in the experiments. Written in Processing, they will run on any platform that has Processing (MIT, public domain) installed.

- Notebooks: Contain all analysis. These are Mathematica notebooks (Wolfram, licence required, free reader available from Wolfram site).

- Protocol: An rtf-document used as an instruction sheet for the participants.
description: The work was supported by the DFG Collaborative Research Center SFB TRR 135 headed by Karl Gegenfurtner (Justus-Liebig Universita ̈t Giessen, Germany) and by the program by the Flemish Government (METH/14/02), awarded to Johan Wagemans. Jan Koenderink is supported by the Alexander von Humboldt Foundation.
DOI: 10.5281/zenodo.1293301
title: Area Dominates Edge In Pointillistic Colour

description: Dataset relative to the following publication:

Koenderink, J, van Doorn, A. & Gegenfurtner, K.R. (2018) Area dominates edge in pointilistic colour. i-Perception, 9(4), 1–41. doi: 10.5281/zenodo.1293301

This is all that is needed to reproduce the figures and the numbers mentioned in the manuscript.<br>
These is also sufficient data to let one rerun the experiments with original instructions and programs and to analyse the results as described in the paper.

All that is needed is to install Processing and Mathematica and edit filenames at various places in the sources (this is really minimal work).

Here is a list of “what there is”:

- Analysis: Has initial analysis of the raw data. These are Mathematica (Wolfram, requires licence, free reader available from Wolfram site) notebooks.

- Data: Contains all raw data, as text files and as CSV summaries.

- Dots: Contains the programs used in the experiments. Written in Processing, they will run on any platform that has Processing (MIT, public domain) installed.

- Notebooks: Contain all analysis. These are Mathematica notebooks (Wolfram, licence required, free reader available from Wolfram site).

- Protocol: An rtf-document used as an instruction sheet for the participants.
description: The work was supported by the DFG Collaborative Research Center SFB TRR 135 headed by Karl Gegenfurtner (Justus-Liebig Universita ̈t Giessen, Germany) and by the program by the Flemish Government (METH/14/02), awarded to Johan Wagemans. Jan Koenderink is supported by the Alexander von Humboldt Foundation.
DOI: 10.17632/9dbbhgn42r.1
title: Data for: A Prospective Comparison of Diagnostic Tools for the Diagnosis of Carpal Tunnel Syndrome

description: CTS-6, Kamath, Wainner, Lo with Nerve conduction study data
DOI: 10.5281/zenodo.1294037
title: Paleohydrology On Mars Constrained By Mass Balance And Mineralogy Of Pre‐Amazonian Sodium Chloride Lakes

description: Included are the raw results obtained by running the numerical models and analyzing the remote sensing maps. Also included are the input data and output data for all CHIM-XPT and SOLVEQ-XPT geochemical models, so the user may reproduce the results from the paper. Programs CHIM-XPT and SOLVEQ-XPT ((c) Mark H. Reed, University of Oregon) are required to run the geochemical models. Please refer to the paper for details on methodology, and get in touch if clarification is required ("Paleohydrology on Mars constrained by mass balance and mineralogy of pre-Amazonian sodium chloride lakes", by M. Melwani Daswani and E. S. Kite, published in the Journal of Geophysical Research: Planets Volume 122, Issue 9 (2017), https://doi.org/10.1002/2017JE005319).

Please get in touch if you notice any mistakes too. All data are backed up by M. Melwani Daswani. A lot of data were generated for this project, and it is possible something may have been missed while uploading.

Mohit Melwani Daswani, 20 June 2018<br>
melwani.mohit@gmail.com

EOM
description: We thank David P. Mayer for producing the HiRISE and CTX DTMs, for helpful discussions, and for help with GIS. We are grateful for comments and suggestions from reviewers John Bridges and M. R. El‐Maarry, which improved the manuscript. We thank Walter Kiefer, Timothy Glotch, and Cheng Ye for data that helped shape this work, and we also acknowledge discussions with and insights from Justin Filiberto, Benjamin Black, Mark Reed, Caleb Fassett, Thomas Bristow, Jim Palandri, Tim Bowling, and Monica Grady. We acknowledge the use of University of Chicago Research Computing Center computing resources ("Midway" cluster). The data used are listed in the references, tables, and the supporting information. This work was supported by NASA grant NNX16AG55G.
DOI: 10.5281/zenodo.1294038
title: Paleohydrology On Mars Constrained By Mass Balance And Mineralogy Of Pre‐Amazonian Sodium Chloride Lakes

description: Included are the raw results obtained by running the numerical models and analyzing the remote sensing maps. Also included are the input data and output data for all CHIM-XPT and SOLVEQ-XPT geochemical models, so the user may reproduce the results from the paper. Programs CHIM-XPT and SOLVEQ-XPT ((c) Mark H. Reed, University of Oregon) are required to run the geochemical models. Please refer to the paper for details on methodology, and get in touch if clarification is required ("Paleohydrology on Mars constrained by mass balance and mineralogy of pre-Amazonian sodium chloride lakes", by M. Melwani Daswani and E. S. Kite, published in the Journal of Geophysical Research: Planets Volume 122, Issue 9 (2017), https://doi.org/10.1002/2017JE005319).

Please get in touch if you notice any mistakes too. All data are backed up by M. Melwani Daswani. A lot of data were generated for this project, and it is possible something may have been missed while uploading.

Mohit Melwani Daswani, 20 June 2018<br>
melwani.mohit@gmail.com

EOM
description: We thank David P. Mayer for producing the HiRISE and CTX DTMs, for helpful discussions, and for help with GIS. We are grateful for comments and suggestions from reviewers John Bridges and M. R. El‐Maarry, which improved the manuscript. We thank Walter Kiefer, Timothy Glotch, and Cheng Ye for data that helped shape this work, and we also acknowledge discussions with and insights from Justin Filiberto, Benjamin Black, Mark Reed, Caleb Fassett, Thomas Bristow, Jim Palandri, Tim Bowling, and Monica Grady. We acknowledge the use of University of Chicago Research Computing Center computing resources ("Midway" cluster). The data used are listed in the references, tables, and the supporting information. This work was supported by NASA grant NNX16AG55G.
DOI: 10.6073/pasta/350b73fcf6c319b2583c233b21c2b191
title: Change in marsh surface elevation measured with a Surface Elevation Table (SET) at control plots in a Spartina patens-dominated salt marsh at Law's Point, Rowley River, Plum Island Ecosystem LTER, MA.

description: A Surface Elevation Table (SET) is used to measure changes in the elevation of the marsh platform at a Spartina patens-dominated marsh on the Rowley River in the Plum Island Ecosystem (PIE) LTER site, MA.
DOI: 10.5281/zenodo.1293940
title: Gromos-Ckp Dope Simulations (Versions 1 And 2) 271 K

description: Two GROMOS-CKP DOPE bilayer simulations performed using GROMACS 5.0.6 for 500 ns with different starting velocities. Simulations were performed with a 1.4 nm cut-off with PME for the Coulombic and a 1.4 nm cut-off for the van der Waals interactions with a dispersion correction. These simulations were performed at 271 K with a 128 lipid bilayer. The full trajectories are provided bar the initial 100 ns. The starting structure was taken from an equilibrated DOPE membrane simulated with an older version of the force field which used the PC charges in the head group (see the SI of https://pubs.acs.org/doi/abs/10.1021/jp207013v). The newer PE parameters were constructed using the standard GROMOS lysine parameters.
DOI: 10.5281/zenodo.1293941
title: Gromos-Ckp Dope Simulations (Versions 1 And 2) 271 K

description: Two GROMOS-CKP DOPE bilayer simulations performed using GROMACS 5.0.6 for 500 ns with different starting velocities. Simulations were performed with a 1.4 nm cut-off with PME for the Coulombic and a 1.4 nm cut-off for the van der Waals interactions with a dispersion correction. These simulations were performed at 271 K with a 128 lipid bilayer. The full trajectories are provided bar the initial 100 ns. The starting structure was taken from an equilibrated DOPE membrane simulated with an older version of the force field which used the PC charges in the head group (see the SI of https://pubs.acs.org/doi/abs/10.1021/jp207013v). The newer PE parameters were constructed using the standard GROMOS lysine parameters.
DOI: 10.5281/zenodo.1294050
title: Sample Datasets For Galaxy Rna-Seq Tutorial

description: This is downsampled dataset from http://dx.doi.org/10.1038/nprot.2016.095. It was prepared as follows:


	Mapping data from  http://dx.doi.org/10.1038/nprot.2016.095 against hg38 using HISAT2
	Restricting resulting BAM datasets to chrX:70,000,000-80,000,000
	Extracting reads using picard SamToFastq tool


File rnaseq_sex.tab contains mapping between accession numbers and sex of the sequences individuals.
DOI: 10.5281/zenodo.1294051
title: Samples Datasets For Galaxy Rna-Seq Tutorial

description: This is downsampled dataset from http://dx.doi.org/10.1038/nprot.2016.095. It was prepared as follows:


	Mapping data from  http://dx.doi.org/10.1038/nprot.2016.095 against hg38 using HISAT2
	Restricting resulting BAM datasets to chrX:70,000,000-80,000,000
	Extracting reads using picard SamToFastq tool
DOI: 10.6073/pasta/0ccf521012113d919375aba2965ca307
title: Change in marsh surface elevation measured with a Surface Elevation Table (SET) at control plots in a Spartina alterniflora-dominated salt marsh,North Inlet, Georgetown, SC.

description: A Surface Elevation Table (SET) is used to measure changes in the elevation of the platform at a Spartina alterniflora-dominated marsh on the Goat Island, North Inlet, Georgetown, SC. Measurements are done monthly.
DOI: 10.5281/zenodo.1295405
title: Sotorrent Dataset

description: Stack Overflow (SO) is the most popular question-and-answer website for software developers, providing a large amount of code snippets and free-form text on a wide variety of topics. Like other software artifacts, questions and answers on SO evolve over time, for example when bugs in code snippets are fixed, code is updated to work with a more recent library version, or text surrounding a code snippet is edited for clarity. To be able to analyze how content on SO evolves, we built <em>SOTorrent</em>, an open dataset based on the official SO data dump. <em>SOTorrent </em>provides access to the version history of SO content at the level of whole posts and individual text or code blocks. It connects SO posts to other platforms by aggregating URLs from text blocks and by collecting references from GitHub files to SO posts. Our vision is that researchers will use <em>SOTorrent </em>to investigate and understand the evolution of SO posts and their relation to other platforms such as GitHub.
description: The dataset is based on the official Stack Overflow data dump released 2018-06-05 (https://archive.org/details/stackexchange) and the Google BigQuery GitHub data set queried 2018-06-17 (https://cloud.google.com/bigquery/public-data/github). Please read the license files (LICENSE.md) before using the dataset.
DOI: 10.5517/ccdc.csd.cc203svs
title: CCDC 1850695: Experimental Crystal Structure Determination

description: Related Article: Mei Guo, Yi-Quan Zhang, Zhenhua Zhu, Jinkui Tang|2018|Inorg.Chem.|57|12213|doi:10.1021/acs.inorgchem.8b01878
description: Related Article: Mei Guo, Jinkui Tang|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc203swt
title: CCDC 1850696: Experimental Crystal Structure Determination

description: Related Article: Mei Guo, Yi-Quan Zhang, Zhenhua Zhu, Jinkui Tang|2018|Inorg.Chem.|57|12213|doi:10.1021/acs.inorgchem.8b01878
description: Related Article: Mei Guo, Jinkui Tang|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc203sxv
title: CCDC 1850697: Experimental Crystal Structure Determination

description: Related Article: Mei Guo, Yi-Quan Zhang, Zhenhua Zhu, Jinkui Tang|2018|Inorg.Chem.|57|12213|doi:10.1021/acs.inorgchem.8b01878
description: Related Article: Mei Guo, Jinkui Tang|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.23719/1528591
title: Metadata for Nitrate Diffusion in Hydrogels (University of Arkansas)

description: Time series concentration data for nitrate in diffusion cell compartments.
DOI: 10.5281/zenodo.8246899
title: Data for article: Matrix mismatch and its estimation in single-lab studies

description: This repository provides data for the publication Matrix mismatch and its estimation in single-lab studies by Uhlig et al. Three data sets are provided: * The data for Figure 1 * The data for the example shown in Table 1 * The data for the example shown in Table 3
DOI: 10.5281/zenodo.8246900
title: Data for article: Matrix mismatch and its estimation in single-lab studies

description: This repository provides data for the publication Matrix mismatch and its estimation in single-lab studies by Uhlig et al. Three data sets are provided: * The data for Figure 1 * The data for the example shown in Table 1 * The data for the example shown in Table 3
DOI: 10.6084/m9.figshare.22241809
title: HBV Pres1/s2 mutations table (2).xlsx

description: Mutations on the Polymerase region of HBV associated with drug resistance.
DOI: 10.6084/m9.figshare.22241809.v1
title: mutations table (2).xlsx

description: Mutations on the Polymerase region of HBV associated with drug resistance.
DOI: 10.6084/m9.figshare.22241809.v2
title: HBV Pres1/s2 mutations table (2).xlsx

description: Mutations on the Polymerase region of HBV associated with drug resistance.
DOI: 10.6084/m9.figshare.23946642
title: Reference sequences accession number and Genotype

description: Reference sequences accession number and Genotype used to construct a phylogenetic tree.
DOI: 10.11588/data/m2tsit/91nenm
title: Dataset_Datablic_Interview_Excerpts.pdf

description: :unav
DOI: 10.11588/data/m2tsit/iqyduz
title: Supplement_3_Category_system.pdf

description: :unav
DOI: 10.11588/data/m2tsit
title: Neither Carrots nor Sticks? Challenges surrounding Data Sharing from the Perspective of Research Funding Agencies – A Qualitative Expert Interview Study [Interview Excerpts]

description: This dataset contains summaries from interviews with data sharing experts from internationa funding agencies on their organisation's data sharing policy. Data Sharing is widely recognised as crucial for accelerating scientific research and improving its quality. However, data sharing is still not a common practice. Funding agencies tend to facilitate the sharing of research data by both providing incentives and requiring data sharing as part of their policies and conditions for awarding grants. The goal of our article is to answer the following question: What challenges do international funding agencies see when it comes to their own efforts to foster and implement data sharing through their policies? We conducted a series of sixteen guideline-based expert interviews with representatives of leading international funding agencies. As contact persons for open science at their respective agencies, they offered their perspectives and experiences concerning their organisations’ data sharing policies. We performed a qualitative content analysis of the interviews and categorised the challenges perceived by funding agencies.
DOI: 10.11588/data/m2tsit/dlgngd
title: Supplement_2_Transcription_and_coding_guideline.pdf

description: :unav
DOI: 10.11588/data/m2tsit/qslkah
title: Supplement_1_Interview_guideline.pdf

description: :unav
DOI: 10.13016/dspace/o1om-l1dc
title: A CloudSat and CALIPSO-based evaluation of the effects of thermodynamic instability and aerosol loading on Amazon Basin deep convection and lightning

description: See journal article
description: The Amazon Basin, which plays an important role in the carbon and water cycle, is under stress due to changes in climate, agricultural practices, and deforestation. The Basin includes a rainforest in the northwest and a mix of deforested areas, savannah-type vegetation, and agriculture in the southeast. The effects of instability and aerosol loading on thunderstorms in the Basin (75-45° W, 0-15° S) were examined during mid-August through mid-December, a period with large variations in aerosols, intense convective storms, and plentiful flashes. The analysis used measurements of radar reflectivity, ice water content (IWC), and aerosol type from instruments aboard the CloudSat and CALIPSO satellites, flash rates from the ground-based STARNET network, and aerosol optical depth (AOD) from a surface network and a meteorological re-analysis. After controlling for convective available potential energy (CAPE), a measure of instability, it was found that thunderstorms that developed under dirty (high-AOD) conditions were approximately 1.5 km deeper, had 50% more IWC, and more than two times as many flashes as storms that developed under clean (low-AOD) conditions. Flash rates were also found to be larger during periods when smoke rather than dust was common in the lower troposphere, likely because these periods were less stable.
DOI: 10.6084/m9.figshare.23950428
title: <b>D</b><b>ifferences in adult survival drive divergent demographic responses to a decade of field warming on the Tibetan Plateau</b>

description: The data for long-term warming on population dynamics
DOI: 10.6084/m9.figshare.23950428.v1
title: <b>D</b><b>ifferences in adult survival drive divergent demographic responses to a decade of field warming on the Tibetan Plateau</b>

description: The data for long-term warming on population dynamics
DOI: 10.5517/cc115k3w
title: CCDC 958647: Experimental Crystal Structure Determination

description: Related Article: J. C. Berthet, P. Thuery, M. Ephritikhine|2013|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.