cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.855625
title: Reproducibility and R

description: A brief presentation for a weekly lab meeting about ways to improve the reproducibility of scientific workflows using R for the Williams Lab (Department of Geography, University of Wisconsin-Madison). Also discussed at: https://downwithtime.wordpress.com/2013/11/19/reproducibility-and-r-better-results-better-code-better-science/
DOI: 10.6084/m9.figshare.855627.v3
title: B Salhia et al Methylation Metadata Spreadsheet for Breast Brain Metastasis

description: DNA Methylation Analysis using the Infinium HumanMethylation27 BeadArray (Illumina) for 32 Breast Brain Metastasis samples, 15 Non-Neoplastic Brain samples, and 12 Non-Neoplastic Breast samples
DOI: 10.6084/m9.figshare.855624.v1
title: Fermi LAT Diffuse galactic Background Model in HEALPix

description: <strong>gll_iem_v02_P6_V11_DIFFUSE.fit </strong>converted with Aladin to HEALPix
DOI: 10.6084/m9.figshare.855620
title: Supplementary Data for Southan & Hancock BACE evolution paper

description: Supplementary Data for the Frontiers paper "A Tale of Two Drug Targets: The Evolutionary History of BACE1 and BACE2" See blogpost http://cdsouthan.blogspot.se/2014/01/a-tale-of-two-targets-bace1-and-bace2.html
DOI: 10.6084/m9.figshare.855625.v1
title: Reproducibility and R

description: A brief presentation for a weekly lab meeting about ways to improve the reproducibility of scientific workflows using R for the Williams Lab (Department of Geography, University of Wisconsin-Madison). Also discussed at: https://downwithtime.wordpress.com/2013/11/19/reproducibility-and-r-better-results-better-code-better-science/
DOI: 10.6084/m9.figshare.855627.v2
title: B Salhia et al Methylation Metadata Spreadsheet for Breast Brain Metastasis

description: DNA Methylation Analysis using the Infinium HumanMethylation27 BeadArray (Illumina) for 32 Breast Brain Metastasis samples, 15 Non-Neoplastic Brain samples, and 12 Non-Neoplastic Breast samples
DOI: 10.6084/m9.figshare.855617
title: Terrestrial Mammal Food Web of Newfoundland

description: This fileset includes a detailed database of the diet of native and non-native terrestrial mammals of Newfoundland, Canada, a feedings links matrix, and a meta-data file with details on both data sets.
DOI: 10.6084/m9.figshare.855619
title: Charlatan regulates ISC

description: Amcheslavsky, A. et al., 2014, Development in press.
DOI: 10.6084/m9.figshare.855613
title: fna file for Schwarzberg et al. paper

description: fna file from 454-pyrosequencing
DOI: 10.6084/m9.figshare.855619.v1
title: Charlatan regulates ISC

description: Amcheslavsky, A. et al., 2014, Development in press.
DOI: 10.6084/m9.figshare.855607
title: MAL35 MALF Labels

description: MALF labels for the MAL35 data set.
DOI: 10.6084/m9.figshare.855612
title: Mapping file for fna file

description: This is the mapping file that goes along with the fna file from 454-pyrosequencing
DOI: 10.6084/m9.figshare.855620.v2
title: Supplementary Data for Southan & Hancock BACE evolution paper

description: Supplementary Data for the Frontiers paper "A Tale of Two Drug Targets: The Evolutionary History of BACE1 and BACE2" See blogpost http://cdsouthan.blogspot.se/2014/01/a-tale-of-two-targets-bace1-and-bace2.html
DOI: 10.6084/m9.figshare.855537
title: MGH10 MALF Labels

description: MALF labels for MGH10 data set.
DOI: 10.6084/m9.figshare.855578
title: LPBA40 MALF Labels

description: MALF labels for the LPBA40 data set.
DOI: 10.6084/m9.figshare.855617.v1
title: Terrestrial Mammal Food Web of Newfoundland

description: This fileset includes a detailed database of the diet of native and non-native terrestrial mammals of Newfoundland, Canada, a feedings links matrix, and a meta-data file with details on both data sets.
DOI: 10.6084/m9.figshare.855620.v1
title: Supplementary Data for Southan & Hancock BACE evolution paper

description: Supplementary Data for the paper "A Tale of Two Drug Targets: The Evolutionary History of BACE1 and BACE2" Frontiers in press
DOI: 10.6084/m9.figshare.855526
title: IBSR18 MALF Labels

description: MALF labels for IBSR18 data set
DOI: 10.6084/m9.figshare.855507
title: CUMC12 MALF Labels

description: CUMC12 MALF Labels
DOI: 10.6084/m9.figshare.855537.v1
title: MGH10 MALF Labels

description: MALF labels for MGH10 data set.
DOI: 10.6084/m9.figshare.855607.v1
title: MAL35 MALF Labels

description: MALF labels for the MAL35 data set.
DOI: 10.6084/m9.figshare.855617.v2
title: Terrestrial Mammal Food Web of Newfoundland

description: This fileset includes a detailed database of the diet of native and non-native terrestrial mammals of Newfoundland, Canada, a feedings links matrix, and a meta-data file with details on both data sets.
DOI: 10.6084/m9.figshare.855494
title: PeerJ32

description: Data files for the PeerJ32 publication
DOI: 10.6084/m9.figshare.855526.v1
title: IBSR18 MALF Labels

description: MALF labels for IBSR18 data set
DOI: 10.6084/m9.figshare.855478
title: 7B Fortran

description: traying to reproduce fig 7B from "A single column thalamocortical network model" (Traub et al 2005) on Fortran version of Traub model. Files: groucho_diff.txt - difference between the code and default groucho.f ( https://github.com/hglabska/Thalamocortical/blob/master/Fortran_ifc/groucho.f commited on 22.10.2013), the rest of the code is the some. figout7B.dat - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate 1.time, 2.voltage in soma in cell1 3.voltage in last compartment in cell1 4.voltage in 43 compartment in cell1 5. average voltage in somatas (within the population) 6. total AMPA conductance in cell 2 7. total NMDA conductance in cell 2 8. total GABA conductance in cell 2 9.voltage in soma in cell3 10.voltage in soma in cell4 except spinystllate: 11. field 1mm 12. field 2mm
DOI: 10.6084/m9.figshare.855486
title: 7A Neuron use_traubexac = 0

description: traying to reproduce fig 7A from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate - voltage (! only voltage) data from soma of cell1 from the population init.hoc, groucho.hoc files which I change compare to http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=82894 constant time step use_traubexac = 0 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.855507.v1
title: CUMC12 MALF Labels

description: CUMC12 MALF Labels
DOI: 10.6084/m9.figshare.855617.v3
title: Terrestrial Mammal Food Web of Newfoundland

description: This fileset includes a detailed database of the diet of native and non-native terrestrial mammals of Newfoundland, Canada, a feedings links matrix, and a meta-data file with details on both data sets.
DOI: 10.6084/m9.figshare.855494.v1
title: PeerJ32

description: Data files for the PeerJ32 publication
DOI: 10.6084/m9.figshare.855462
title: 7C Fortran

description: traying to reproduce fig 7C from "A single column thalamocortical network model" (Traub et al 2005) on Fortran version of Traub model. Files: groucho_diff.txt - difference between the code and default groucho.f ( https://github.com/hglabska/Thalamocortical/blob/master/Fortran_ifc/groucho.f commited on 22.10.2013), the rest of the code is the some. figout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate 1.time, 2.voltage in soma in cell1 3.voltage in last compartment in cell1 4.voltage in 43 compartment in cell1 5. average voltage in somatas (within the population) 6. total AMPA conductance in cell 2 7. total NMDA conductance in cell 2 8. total GABA conductance in cell 2 9.voltage in soma in cell3 10.voltage in soma in cell4 except spinystllate: 11. field 1mm 12. field 2mm
DOI: 10.6084/m9.figshare.855470
title: 7D Fortran

description: traying to reproduce fig 7D from "A single column thalamocortical network model" (Traub et al 2005) on Fortran version of Traub model. Files: groucho_diff.txt - difference between the code and default groucho.f ( https://github.com/hglabska/Thalamocortical/blob/master/Fortran_ifc/groucho.f commited on 22.10.2013), the rest of the code is the some. figout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate 1.time, 2.voltage in soma in cell1 3.voltage in last compartment in cell1 4.voltage in 43 compartment in cell1 5. average voltage in somatas (within the population) 6. total AMPA conductance in cell 2 7. total NMDA conductance in cell 2 8. total GABA conductance in cell 2 9.voltage in soma in cell3 10.voltage in soma in cell4 except spinystllate: 11. field 1mm 12. field 2mm
DOI: 10.6084/m9.figshare.855486.v2
title: 7A Neuron use_traubexac = 0

description: traying to reproduce fig 7A from "A single column thalamocortical network model" (Traub et al 2005) On Neuron version of Traub model. figout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate - voltage data from soma of the example cell from the population
DOI: 10.6084/m9.figshare.855617.v4
title: Terrestrial Mammal Food Web of Newfoundland

description: This fileset includes a detailed database of the diet of native and non-native terrestrial mammals of Newfoundland, Canada, a feedings links matrix, and a meta-data file with details on both data sets.
DOI: 10.6084/m9.figshare.855456
title: 7A Fortran

description: traying to reproduce fig 7A from "A single column thalamocortical network model" (Traub et al 2005) on Fortran version of Traub model. Files: groucho_diff.txt - difference between the code and default groucho.f ( https://github.com/hglabska/Thalamocortical/blob/master/Fortran_ifc/groucho.f commited on 22.10.2013), the rest of the code is the some. figout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate 1.time, 2.voltage in soma in cell1 3.voltage in last compartment in cell1 4.voltage in 43 compartment in cell1 5. average voltage in somatas (within the population) 6. total AMPA conductance in cell 2 7. total NMDA conductance in cell 2 8. total GABA conductance in cell 2 9.voltage in soma in cell3 10.voltage in soma in cell4 except spinystllate: 11. field 1mm 12. field 2mm
DOI: 10.6084/m9.figshare.855478.v1
title: 7B Fortran

description: traying to reproduce fig 7B from "A single column thalamocortical network model" (Traub et al 2005) on Fortran version of Traub model. Files: 7Bfigout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate 1.time, 2.voltage in soma in cell1 3.voltage in last compartment in cell1 4.voltage in 43 compartment in cell1 5. average voltage in somatas (within the population) 6. total AMPA conductance in cell 2 7. total NMDA conductance in cell 2 8. total GABA conductance in cell 2 9.voltage in soma in cell3 10.voltage in soma in cell4 except spinystllate: 11. field 1mm 12. field 2mm
DOI: 10.6084/m9.figshare.855470.v2
title: 7D Fortran

description: traying to reproduce fig 7D from "A single column thalamocortical network model" (Traub et al 2005) on Fortran version of Traub model. Files: groucho_diff.txt - difference between the code and default groucho.f ( https://github.com/hglabska/Thalamocortical/blob/master/Fortran_ifc/groucho.f commited on 22.10.2013), the rest of the code is the some. figout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate 1.time, 2.voltage in soma in cell1 3.voltage in last compartment in cell1 4.voltage in 43 compartment in cell1 5. average voltage in somatas (within the population) 6. total AMPA conductance in cell 2 7. total NMDA conductance in cell 2 8. total GABA conductance in cell 2 9.voltage in soma in cell3 10.voltage in soma in cell4 except spinystllate: 11. field 1mm 12. field 2mm
DOI: 10.6084/m9.figshare.855486.v4
title: 7A Neuron use_traubexac = 0

description: traying to reproduce fig 7A from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files: fig.png - rasterplot, out.dat - data for rasterplot, test7.png voltage trace from suppyrRS, suppyrFRB, tuftIB and spinystellate, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate - voltage (! only voltage) data from soma of cell1 from the population init.hoc, groucho.hoc files which I change compare to http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=82894 constant time step use_traubexac = 0 awake = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.855462.v1
title: 7C

description: traying 7C
DOI: 10.6084/m9.figshare.855470.v1
title: 7D Fortran

description: traying to reproduce fig 7D from "A single column thalamocortical network model" (Traub et al 2005) on Fortran version of Traub model. Files: figout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate 1.time, 2.voltage in soma in cell1 3.voltage in last compartment in cell1 4.voltage in 43 compartment in cell1 5. average voltage in somatas (within the population) 6. total AMPA conductance in cell 2 7. total NMDA conductance in cell 2 8. total GABA conductance in cell 2 9.voltage in soma in cell3 10.voltage in soma in cell4 except spinystllate: 11. field 1mm 12. field 2mm
DOI: 10.6084/m9.figshare.855486.v3
title: 7A Neuron use_traubexac = 0

description: traying to reproduce fig 7A from "A single column thalamocortical network model" (Traub et al 2005) on Neuron version of Traub model. Files figout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO... suppyrRS, suppyrFRB, tuftIB, spinystellate - voltage (! only voltage) data from soma of cell1 from the population constant time step use_traubexac = 0 tstop = 1600 ms dt was 0.025
DOI: 10.6084/m9.figshare.853918
title: Comparative dataset - Australia

description: Passerine birds of Australia classified as hosts or non-hosts of brood parasites and cooperative or non-cooperative breeders (see Science 20 Dec 2013)
DOI: 10.6084/m9.figshare.855456.v1
title: 7A

description: traying to reproduce fig 7A from A single column thalamocortical network model (Traub et al 2005). Neuron vs. Fortran
DOI: 10.6084/m9.figshare.855462.v2
title: 7C Fortran

description: traying to reproduce fig 7C from "A single column thalamocortical network model" (Traub et al 2005) On Fortran version of Traub model. figout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate
DOI: 10.6084/m9.figshare.853917
title: Comparative dataset Africa

description: Birds of southern Africa identifying hosts of brood parasites and cooperatively breeding species
DOI: 10.6084/m9.figshare.853917.v1
title: Comparative dataset Africa

description: Birds of southern Africa identifying hosts of brood parasites and cooperatively breeding species
DOI: 10.6084/m9.figshare.853918.v2
title: Comparative dataset - Australia

description: Passerine birds of Australia classified as hosts or non-hosts of brood parasites and cooperative or non-cooperative breeders (see Science 20 Dec 2013)
DOI: 10.6084/m9.figshare.855456.v2
title: 7A

description: traying to reproduce fig 7A from A single column thalamocortical network model (Traub et al 2005). Neuron vs. Fortran
DOI: 10.6084/m9.figshare.855462.v4
title: 7C Fortran

description: traying to reproduce fig 7C from "A single column thalamocortical network model" (Traub et al 2005) on Fortran version of Traub model. Files: groucho_diff.txt - difference between the code and default groucho.f ( https://github.com/hglabska/Thalamocortical/blob/master/Fortran_ifc/groucho.f commited on 22.10.2013), the rest of the code is the some. figout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate 1.time, 2.voltage in soma in cell1 3.voltage in last compartment in cell1 4.voltage in 43 compartment in cell1 5. average voltage in somatas (within the population) 6. total AMPA conductance in cell 2 7. total NMDA conductance in cell 2 8. total GABA conductance in cell 2 9.voltage in soma in cell3 10.voltage in soma in cell4 except spinystllate: 11. field 1mm 12. field 2mm
DOI: 10.6084/m9.figshare.853916
title: Fairy-wren parasitism vs group size - Campbell Park

description: Superb fairy-wren nests at Campbell Park showing the breeding female, whether the nest was parasitized by a cuckoo, which cuckoo territory the nest was within and the fairy-wren group size.
DOI: 10.6084/m9.figshare.855462.v3
title: 7C Fortran

description: traying to reproduce fig 7C from "A single column thalamocortical network model" (Traub et al 2005) on Fortran version of Traub model. Files figout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate 1.time, 2.voltage in soma in cell1 3.voltage in last compartment in cell1 4.voltage in 43 compartment in cell1 5. average voltage in somatas (within the population) 6. total AMPA conductance in cell 2 7. total NMDA conductance in cell 2 8. total GABA conductance in cell 2 9.voltage in soma in cell3 10.voltage in soma in cell4 except spinystllate: 11. field 1mm 12. field 2mm
DOI: 10.6084/m9.figshare.853918.v1
title: Brood Parasitism and the Evolution of Cooperative Breeding in Birds

description: Published in Science 20 Dec 2013
DOI: 10.6084/m9.figshare.855456.v3
title: 7A

description: traying to reproduce fig 7A from A single column thalamocortical network model (Traub et al 2005). Neuron vs. Fortran
DOI: 10.6084/m9.figshare.853916.v1
title: Fairy-wren parasitism vs group size - Campbell Park

description: Superb fairy-wren nests at Campbell Park showing the breeding female, whether the nest was parasitized by a cuckoo, which cuckoo territory the nest was within and the fairy-wren group size.
DOI: 10.6084/m9.figshare.855456.v4
title: 7A

description: traying to reproduce fig 7A from A single column thalamocortical network model (Traub et al 2005). Neuron vs. Fortran
DOI: 10.6084/m9.figshare.855456.v6
title: 7A Fortran

description: traying to reproduce fig 7A from "A single column thalamocortical network model" (Traub et al 2005) on Fortran version of Traub model. Files: groucho_diff.txt - difference between the code and default groucho.f ( https://github.com/hglabska/Thalamocortical/blob/master/Fortran_ifc/groucho.f commited on 22.10.2013), the rest of the code is the some. figout.dat - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate 1.time, 2.voltage in soma in cell1 3.voltage in last compartment in cell1 4.voltage in 43 compartment in cell1 5. average voltage in somatas (within the population) 6. total AMPA conductance in cell 2 7. total NMDA conductance in cell 2 8. total GABA conductance in cell 2 9.voltage in soma in cell3 10.voltage in soma in cell4 except spinystllate: 11. field 1mm 12. field 2mm
DOI: 10.6084/m9.figshare.855456.v5
title: 7A Fortran

description: traying to reproduce fig 7A from "A single column thalamocortical network model" (Traub et al 2005) on Fortran version of Traub model. Files : figout.png - rasterplot, out.dat - data for rasterplot, GROUCHO110... data from suppyrRS, suppyrFRB, tuftIB, spinystellate: 1.time, 2.voltage in soma in cell1 3.voltage in last compartment in cell1 4.voltage in 43 compartment in cell1 5. average voltage in somatas (within the population) 6. total AMPA conductance in cell 2 7. total NMDA conductance in cell 2 8. total GABA conductance in cell 2 9.voltage in soma in cell3 10.voltage in soma in cell4 except spinystllate: 11. field 1mm 12. field 2mm
DOI: 10.6084/m9.figshare.853898
title: Stress Propagation in Group Project Social Networks

description: Technical Writing (ENG307) is a required course for many science students at Western Kentucky University (WKU). A group project is required in this course. To gain insight into how the social networks between these groups affect individual grades through stress propagation, we obtained anonymous logs from these group projects. We constructed “Friend Approximation Networks” (FANs) by connecting students if they (1) are in the same project group or (2) have the same major and college year. We adapted sand-pile models to stress test the FANs: we randomly dropped “grains of sand” (representing stress) onto the network; when a node exceeds its threshold, it divides its sand evenly among its neighbors; an avalanche or cascade typically follows if any of those neighbors subsequently exceeds its threshold. We measured the size and frequency of cascades at different locations to test correlations between stress propagation and individual project grades. With this limited dataset, we have not produced a correlation stronger than ρ=0.35; however, this data has provided ample support for adapting these preliminary methods for larger social networks. Additionally, we note that although these stress tests are closely related to eigenvector centrality measures, they provide further parameter control and insight into behavior. The current research is supported by a WKU FUSE grant and the dataset was provided by Dr. Angela Jones.
DOI: 10.6084/m9.figshare.853869
title: Figure 1. The effect of including a D3-dispersion correction on the calculated geometry of the Houk-List transition state, R=Ph.

description: The ten year old Houk-List model, for rationalising the origin of stereoselectivity in the organocatalysed intermolecular aldol addition, is revisited using a variety of computational techniques which have been introduced or improved since the original study. Even for such a relatively small system, the role of dispersion interactions is shown to be crucial, along with the use of basis sets where the superposition errors are low. Understanding the non covalent interactions (NCI) at play is highlighted as essential for the design of new synthetic routes and alternative reactants. An NCI analysis of the transition states enables the identification of non-covalent interactions that determine the reaction outcome, confirming the role of the electrostatic NCHᵟ+∙∙∙Oᵟ- interactions and highlighting new geometric schemes based on dispersion. Alternative mechanisms, such as proton-relays involving a water molecule or the Hajos-Parrish alternative, are shown to be higher in energy. The Amsterdam manifesto, which espouses the principle that scientific data should be citable, is followed here by using interactive data tables assembled via calls to the data DOI (digital-object-identifiers) held on a digital repository.
DOI: 10.6084/m9.figshare.853898.v1
title: Stress Propagation in Group Project Social Networks

description: Technical Writing (ENG307) is a required course for many science students at Western Kentucky University (WKU). A group project is required in this course. To gain insight into how the social networks between these groups affect individual grades through stress propagation, we obtained anonymous logs from these group projects. We constructed “Friend Approximation Networks” (FANs) by connecting students if they (1) are in the same project group or (2) have the same major and college year. We adapted sand-pile models to stress test the FANs: we randomly dropped “grains of sand” (representing stress) onto the network; when a node exceeds its threshold, it divides its sand evenly among its neighbors; an avalanche or cascade typically follows if any of those neighbors subsequently exceeds its threshold. We measured the size and frequency of cascades at different locations to test correlations between stress propagation and individual project grades. With this limited dataset, we have not produced a correlation stronger than ρ=0.35; however, this data has provided ample support for adapting these preliminary methods for larger social networks. Additionally, we note that although these stress tests are closely related to eigenvector centrality measures, they provide further parameter control and insight into behavior. The current research is supported by a WKU FUSE grant and the dataset was provided by Dr. Angela Jones.