cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17114745
title: PlasAnn Database Collection v1.1.0
title: Datasets with code

description: Comprehensive database collection for automated plasmid sequence annotation using PlasAnn. This dataset contains eight essential databases including BLAST protein databases, origin of transfer (oriT) sequences, replicon identification sequences, transposon databases, and RNA families (Rfam covariance models). 

The collection includes:- Database.csv: BLAST protein database in CSV format- Rfam.cm: RNA families covariance models with index files- orit.fna & oriT_TNcentral.fasta: Origin of transfer sequences- plasmidfinder.fasta: Replicon identification database  - transposon.fasta & tncentral_cleaned.fa: Transposon databases- oric.fna: Origin of replication sequences

Total compressed size: 192MB. Compatible with PlasAnn v1.1.0 and later.
DOI: 10.15468/dl.s4h2jt
title: Occurrence Download

description: A dataset containing 135375 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rorippa amphibia"
 ]
}

 The dataset includes 135375 records from 940 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060510-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15570906
title: PlasAnn Database Collection v1.1.0
title: Datasets with code

description: Comprehensive database collection for automated plasmid sequence annotation using PlasAnn. This dataset contains eight essential databases including BLAST protein databases, origin of transfer (oriT) sequences, replicon identification sequences, transposon databases, and RNA families (Rfam covariance models). 

The collection includes:- Database.csv: BLAST protein database in CSV format- Rfam.cm: RNA families covariance models with index files- orit.fna & oriT_TNcentral.fasta: Origin of transfer sequences- plasmidfinder.fasta: Replicon identification database  - transposon.fasta & tncentral_cleaned.fa: Transposon databases- oric.fna: Origin of replication sequences

Total compressed size: 192MB. Compatible with PlasAnn v1.1.0 and later.
DOI: 10.34740/kaggle/dsv/13050857
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/3es6ec
title: 1921 Onward, Occupied Swift Nests, UK

description: The dataset is intended to be a comprehensive inventory of occupied common swift (Apus apus) nests (where swifts were observed using a nest site cavity).

It includes records collected as part of various swift mapping projects including The Swift Inventory, The Swift Survey and The Swift Mapper. The aim of these projects was to better understand the reasons for the decline in swifts in the UK, and to help target conservation of swift nest sites. They collated data from a variety of sources, primarily a public request for information and local surveys. 
 
Between 2009-2015, records were collected as part of the ‘Swift Inventory’. This was a cooperative project involving the support of Concern for Swifts - Scotland, London's Swifts, Northern Ireland Swifts, the RSPB, Swift Conservation and UK Swifts. 

The ‘Swift Survey’ then ran from 2016 -2019. This was a national survey, including a website developed by Environmental Resource Management (ERM) to collect data from the public on nesting swifts. 

From 2020 onwards the ‘Swift Mapper’ tool has been used to collect records. The Swift Mapper is a mapping tool involving RSPB, Natural Apptitude, Swift Conservation, Action for Swifts and Swifts Local Network. 

Records prior to 2009 were provided by swift conservation groups and RSPB surveys. 
 
Accompanying datasets of nest boxes, previously occupied nests and low-level screaming swifts (probable breeders) are also available on the NBN. 
 
This dataset will be updated annually.
DOI: 10.15468/peedv8
title: 1921-Onwards, Swift Screaming Parties, UK

description: This dataset contains reports of common swifts (Apus apus) flying at rooftop level, calling with their characteristic screaming sound. This behaviour indicates that swifts are probably nesting nearby.

It includes records collected as part of various swift mapping projects including The Swift Inventory, The Swift Survey and The Swift Mapper. The aim of these projects was to better understand the reasons for the decline in swifts in the UK, and to help target conservation of swift nest sites. They collated data from a variety of sources, primarily a public request for information and local surveys. 
 
Between 2009-2015, records were collected as part of the ‘Swift Inventory’. This was a cooperative project involving the support of Concern for Swifts - Scotland, London's Swifts, Northern Ireland Swifts, the RSPB, Swift Conservation and UK Swifts. 

The ‘Swift Survey’ then ran from 2016 -2019. This was a national survey, including a website developed by Environmental Resource Management (ERM) to collect data from the public on nesting swifts. 

From 2020 onwards the ‘Swift Mapper’ tool has been used to collect records. The Swift Mapper is a mapping tool involving RSPB, Natural Apptitude, Swift Conservation, Action for Swifts and Swifts Local Network. 
 
Records prior to 2009 were provided by swift conservation groups and RSPB surveys. 
 
Accompanying datasets of swift nest sites, nest boxes and previously occupied nests are also available on the NBN. 
 
This dataset will be updated annually.
DOI: 10.15468/oqwqca
title: Corncrake national surveys - raw data

description: At the beginning on the 20th century, Corncrakes still bred all over the UK, but by the early 1990 they were restricted to a few Scottish islands. Through conservation effort from the Royal Society for the Protection of Birds (RSPB), other conservation organisations (NTS,SWT), NatureScot and farmers and crofters the decline was reversed from the low point of the 1990’s. This dataset contains corncrake records from all annual surveys of Corncrake since 1988, monitoring the increase in Corncrake numbers since 1993 until 2014. From 2014 until 2022 the numbers dropped by 30% with a slight increase recorded in 2023. These surveys have been funded mainly by NatureScot and RSPB, but also by other partners in SCARABBS (Statutory Conservation Agencies and RSPB Breeding Birds Scheme) and other conservation partners e.g. NTS. For each year, the dataset contains all locations of singing males, recorded on multiple visits to each area covered. Multiple observations of the same male are labelled with a unique code for that male (calls heard on separate occasions less than 200m apart are assumed to be the same bird). For all years since 1993, territory centres for each male, calculated from these observations, are provided in the dataset Annual Corncrake surveys in Britain (territory centres).
DOI: 10.15468/wgcc49
title: Corncrake national surveys - territory centres

description: At the beginning on the 20th century, Corncrakes still bred all over the UK, but by the early 1990 they were restricted to a few Scottish islands. Through conservation effort from the Royal Society for the Protection of Birds (RSPB), other conservation organisations (NTS,SWT), NatureScot, the decline was reversed from the low point of the 1990’s. This dataset contains Corncrake records from all annual surveys of Corncrake since 1988, monitoring the increase in Corncrake numbers since 1993 until 2014. Since 2014 the numbers have dropped by 30%. These surveys have been funded mainly by NatureScot and RSPB, but also by other partners in SCARABBS (Statutory Conservation Agencies and RSPB Breeding Birds Scheme) and other conservation partners e.g. NTS. For each year, the dataset contains all locations of singing males, recorded on multiple visits to each area covered. Multiple observations of the same male are labelled with a unique code for that male (calls heard on separate occasions less than 200m apart are assumed to be the same bird).
For all years since 1993, territory centres for each male, calculated from these observations, are provided in the dataset annual Corncrake surveys in Britain (territory centres).
DOI: 10.15468/dl.5ah32c
title: Occurrence Download

description: A dataset containing 3221 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Distribución geográfica de las lagartijas partenogenéticas del género Aspidoscelis en México"
 ]
}

 The dataset includes 3221 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060565-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17114748
title: 121 - The Keeper of Silence : B-C
DOI: 10.5281/zenodo.17114749
title: 121 - The Keeper of Silence : B-C
DOI: 10.15468/dl.q8hcd9
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "OccurrenceStatus is Present",
 "TaxonKey is Cytisus scoparius"
 ]
}

 The dataset includes 153 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060568-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5dqys9
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "OccurrenceStatus is Present",
 "TaxonKey is Datura wrightii"
 ]
}

 The dataset includes 148 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060569-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3eap2
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "OccurrenceStatus is Present",
 "TaxonKey is Philadelphus coronarius"
 ]
}

 The dataset includes 148 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060570-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mfu6sa
title: Occurrence Download

description: A dataset containing 30192 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rosa agrestis"
 ]
}

 The dataset includes 30192 records from 545 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060567-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d33ghd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coptodon ismailiaensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060571-250827131500795/datasets/export for details.
DOI: 10.15468/dl.5kkcn7
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Casuarius unappendiculatus"
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060572-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bcaf6
title: Occurrence Download

description: A dataset containing 1264 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Banco de Germoplasma de Especies Nativas del Instituto de Ecologia y Ambiente Humano - UNSA- Arg"
 ]
}

 The dataset includes 1264 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060576-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x73q55
title: Occurrence Download

description: A dataset containing 118607 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Daphne laureola"
 ]
}

 The dataset includes 118607 records from 861 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060520-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57830/2315959
title: San Francisco Bay Area Network Plant Communities Monitoring Database through field season 2025

description: This dataset contains monitoring data for selected vegetation communities from sample points at Golden Gate National Recreation Area, Muir Woods National Monument, Point Reyes National Seashore, and Pinnacles National Park. It includes data on a suite of vegetation parameters that represent structure and composition metrics, such as cover by species, density of woody plants, and species richness, among others.
DOI: 10.15468/dl.5jxwqj
title: Occurrence Download

description: A dataset containing 263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Strigops habroptila"
 ]
}

 The dataset includes 263 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059359-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5bwuw
title: Occurrence Download

description: A dataset containing 4768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Etheostoma fusiforme"
 ]
}

 The dataset includes 4768 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059360-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z8h3r3
title: Occurrence Download

description: A dataset containing 507 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Telespiza cantans"
 ]
}

 The dataset includes 507 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059361-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5ywdh
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Telespiza ultima"
 ]
}

 The dataset includes 90 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059363-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8e65ts
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gafrarium dispar, Circe dispar, Cytherea abbreviata, Cytherea mixta, Cytherea muscaria, Cytherea pulicaris, Gafrarium dispar, Venus dispar, Venus dispar, Venus dispar)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 54 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059362-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g24wtp
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vini kuhlii"
 ]
}

 The dataset includes 140 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059365-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtwupk
title: Occurrence Download

description: A dataset containing 227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vini peruviana"
 ]
}

 The dataset includes 227 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059366-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/r2aru5
title: Taxonomic position of the fossil ant genus Stiphromyrmex Wheeler (Hymenoptera: Formicidae), with the first description of its queen

description: This dataset contains the digitized treatments in Plazi based on the original journal article Radchenko, Alexander, Ribbecke, Hans-Werner (2025): Taxonomic position of the fossil ant genus Stiphromyrmex Wheeler (Hymenoptera: Formicidae), with the first description of its queen. Contributions to Entomology 75 (2): 361-369, DOI: 10.3897/contrib.entomol.75.e173576AbstractThe previously unknown queen of Stiphromyrmex robustus (Mayr, 1868) is described. The taxonomic position of the fossil genera Stiphromyrmex Wheeler, 1915, Enneamerus Mayr, 1868, and Thanacomyrmex Chény, Wang & Perrichot, 2019 is discussed, and their placement in the Myrmecina genus-group of the tribe Crematogastrini Forel, 1893 is confirmed. A key for the identification of fossil genera and species of this genus-group is provided.
DOI: 10.15468/dl.szvtuw
title: Occurrence Download

description: A dataset containing 13057 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-76.95493 20.50449,-46.21766 47.51236,-64.7576 73.38574,-135.01421 75.10613,-160.87255 73.66248,-175.99724 64.38327,-174.53356 48.49167,-159.89676 27.19273,-167.21516 6.79186,-96.41354 4.30375,-81.77675 -2.03439,-92.0225 9.62897,-76.95493 20.50449))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vespa crabro"
 ]
}

 The dataset includes 13057 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059367-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84qjyu
title: Occurrence Download

description: A dataset containing 424225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Lythrum salicaria",
 "Year 2000-2024"
 ]
}

 The dataset includes 424225 records from 2066 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059309-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qrlc5
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Colombia",
 "Country is Brazil",
 "Country is Peru"
 ]
 },
 "TaxonKey is Hyalinobatrachium munozorum (Lynch & Duellman, 1973)"
 ]
}

 The dataset includes 37 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000736-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7eneku
title: Occurrence Download

description: A dataset containing 2008 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Planera J.F.Gmel."
 ]
}

 The dataset includes 2008 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004578-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rc36k6
title: Occurrence Download

description: A dataset containing 326367 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa pratensis L."
 ]
}

 The dataset includes 326367 records from 547 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000070-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wysf6y
title: Occurrence Download

description: A dataset containing 445 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amyris elemifera L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 445 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035880-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53crw2
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Indigofera grandiflora B.H.Choi & S.K.Cho"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004587-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9sqpy1
title: Occurrence Download

description: A dataset containing 1581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zapus trinotatus Rhoads, 1895",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1581 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000070-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fdnudq
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cissa thalassina (Temminck, 1826)"
 ]
}

 The dataset includes 137 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021368-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lz0lfd
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficus lyrata Warb.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 98 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000070-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.