cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2jk717g
title: Data from: Species richness change across spatial scales

description: Humans have elevated global extinction rates and thus lowered global-scale
 species richness. However, there is no a priori reason to expect that
 losses of global species richness should always, or even often, trickle
 down to losses of species richness at regional and local scales, even
 though this relationship is often assumed. Here, we show that scale can
 modulate our estimates of species richness change through time in the face
 of anthropogenic pressures, but not in a unidirectional way. Instead, the
 magnitude of species richness change through time can increase, decrease,
 reverse, or be unimodal across spatial scales. Using several case studies,
 we show different forms of scale-dependent richness change through time in
 the face of anthropogenic pressures. For example, Central American corals
 show a homogenization pattern, where small scale richness is largely
 unchanged through time, while larger scale richness change is highly
 negative. Alternatively, birds in North America showed a differentiation
 effect, where species richness was again largely unchanged through time at
 small scales, but was more positive at larger scales. Finally, we collated
 data from a heterogeneous set of studies of different taxa measured
 through time from sites ranging from small plots to entire continents, and
 found highly variable patterns that nevertheless imply complex
 scale-dependence in several taxa. In summary, understanding how
 biodiversity is changing in the Anthropocene requires an explicit
 recognition of the influence of spatial scale, and we conclude with some
 recommendations for how to better incorporate scale into our estimates of
 change.
description: data_for_dryadThis file contains all data associated with the manuscript. A metadata file is included in the zip folder.
DOI: 10.5061/dryad.1v2d850
title: Data from: Phenotypic sexual dimorphism is associated with genomic signatures of resolved sexual conflict

description: Intra-locus sexual conflict, where an allele benefits one sex at the
 expense of the other, has an important role in shaping genetic diversity
 of populations through balancing selection. However, the potential for
 mating systems to exert balancing selection through sexual conflict on the
 genome remains unclear. Furthermore, the nature and potential for
 resolution of sexual conflict across the genome has been hotly debated. To
 address this, we analysed de novo transcriptomes from six avian species,
 chosen to reflect the full range of sexual dimorphism and mating systems.
 Our analyses combine expression and population genomic statistics across
 reproductive and somatic tissue, with measures of sperm competition and
 promiscuity. Our results reveal that balancing selection is weakest in the
 gonad, consistent with the resolution of sexual conflict and evolutionary
 theory that phenotypic sex differences are associated with lower levels of
 ongoing conflict. We also demonstrate a clear link between variation in
 sexual conflict and levels of genetic variation across phylogenetic space
 in a comparative framework. Our observations suggest that this conflict is
 short-lived, and is resolved via the decoupling of male and female gene
 expression patterns, with important implications for the role of sexual
 selection in adaptive potential and role of dimorphism in facilitating
 sex-specific fitness optima.
description: Transcriptome fasta
 files for six avian speciesTranscriptomes of six
 avian species. APL (Anas platyrynchos), MGA (Meleagris gallopavo), PHE
 (Phasianus colchicus), NME (Numida meleagris), PCR (Pavo cristatus) and
 ACY (Anser cynoides). Only the best isoform per gene is included and only
 isoforms expressed &gt; 2fpkm.transcriptomes.zip
DOI: 10.15468/dl.x3355z
title: Occurrence Download

description: A dataset containing 725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schizopepon bryoniifolius",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 725 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001676-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.t3k2t2j
title: Data from: Fate of atmospherically deposited NH4+ and NO3- in two temperate forests in China: temporal pattern and redistribution

description: The impacts of anthropogenic nitrogen (N) deposition on forest ecosystems
 depend in large part on its fate. However, our understanding of the fates
 of different forms of deposited N as well as the redistribution over time
 within different ecosystems is limited. In this study, we used the
 15N-tracer method to investigate both the short-term (1 week to 3 months)
 and long-term (1 to 3 years) fates of deposited NH4+ or NO3- by following
 the recovery of the 15N in different ecosystem compartments in a larch
 plantation forest and a mixed forest located in northeastern China. The
 results showed similar total ecosystem retention for deposited NH4+ and
 NO3-, but their distribution within the ecosystems (plants vs soil)
 differed distinctly particularly in the short-term, with higher 5NO3-
 recoveries in plants (while lower recoveries in organic layer) than found
 for 15NH4+. The different short-term fate was likely related to the higher
 mobility of 15NO3- than 15NH4+ in soils instead of plant uptake
 preferences for NO3- over NH4+. In the long-term, differences between N
 forms became less prevalent but higher recoveries in trees (particularly
 in the larch forest) of 15NO3- than 15NH4+ tracer persisted,
 suggesting that incoming NO3- may contribute more to plant biomass
 increment and forest carbon sequestration than incoming NH4+. Differences
 between the two forests in recoveries were largely driven by a higher 15N
 recovery in the organic layer (both N forms) and in trees (for 5NO3-) in
 the larch forest compared to the mixed forest. This was due to a more
 abundant organic layer and possibly higher tree N demand in the larch
 forest than in the mixed forest. Leachate 15N loss was minor (&lt;1%
 of the added 15N) for both N forms and in both forests. Total 15N recovery
 averaged 78% in the short-term and decreased to 55% in the long-term but
 with increasing amount of 15N label (re)-redistributed into slow turn-over
 pools (e.g., trees and mineral soil). The different retention dynamics of
 deposited NH4+ and NO3- may have implications in environmental policy
 related to the anthropogenic emissions of the two N forms.
DOI: 10.5061/dryad.10m1m8v
title: Data from: Evolutionary potential of thermal preference and heat tolerance in Drosophila subobscura

description: Evolutionary change of thermal traits (i.e. heat tolerance and behavioral
 thermoregulation) is one of the most important mechanisms exhibited by
 organisms to respond to global warming. However, the evolutionary
 potential of heat tolerance, estimated as narrow-sense heritability,
 depends on the methodology employed. An alternative adaptive mechanism to
 buffer extreme temperatures is behavioral thermoregulation, although the
 association between heat tolerance and thermal preference is not clearly
 understood. We suspect that methodological effects associated with the
 duration of heat stress during thermal tolerance assays are responsible
 for missing this genetic association. To test this hypothesis, we
 estimated the heritabilities and genetic correlations for thermal traits
 in Drosophila subobscura, using high-temperature static and slow ramping
 assays. We found that heritability for heat tolerance was higher in static
 assays (h2 = 0.134) than in slow ramping assays (h2 = 0.084), suggesting
 that fast assays may provide a more precise estimation of the genetic
 variation of heat tolerance. In addition, thermal preference exhibited a
 low heritability (h2 = 0.066), suggesting a reduced evolutionary response
 for this trait. We also found that the different estimates of heat
 tolerance and thermal preference were not genetically correlated,
 regardless of how heat tolerance was estimated. In conclusion, our data
 suggest that these thermal traits can evolve independently in this
 species. In agreement with previous evidence, these results indicate that
 methodology may have an important impact on genetic estimates of heat
 tolerance and that fast assays are more likely to detect the genetic
 component of heat tolerance.
description: data_ms_Castaneda_et
 al_JEB_2019File contains data of
 thermal preference, heat knockdown temperature and heat knockdown time for
 60 half/full-sib families.
DOI: 10.5061/dryad.6039339
title: Data from: Rapid evolution of invasive traits facilitates the invasion of common ragweed, Ambrosia artemisiifolia

description: 1. Invasive alien plants, together with organisms introduced for
 biological control, are ideal study systems with which to address
 questions of whether, and how fast, organisms adapt to changing
 environments. We compared populations of common ragweed, Ambrosia
 artemisiifolia, from native (USA) and introduced (China) ranges at similar
 latitudes, together with herbivores introduced for biological control, to
 understand the rate of evolutionary adaptive response of an invasive plant
 to novel environments. 2. Evolution of phenotypic traits associated with
 invasiveness was assessed by comparing differentiation in quantitative
 traits (QST) to that of neutral microsatellite genetic loci (FST) and
 through climate data. A common-garden experiment estimated quantitative
 genetic variation associated with competition with grasses and biological
 control history by beetles. 3. Three growth traits (height, total, and
 stem biomass) and plasticity associated with additional nutrients were
 significantly greater in invasive compared to native populations and
 differed from expectations from genetic drift alone. Native, but not
 invasive, populations exhibited traits showing evidence of past selection
 and correlations with climate, consistent with the recent timing of
 introductions. Competition experiments between invasive populations and a
 US bunch grass showed reduced competitive ability in populations with a
 history of biological control, that might indicate a trade-off between
 competitive ability and herbivore resistance in invasive populations. 4.
 Our results demonstrate the rapid rate at which traits favouring invasion
 can evolve in invasive weeds, such as A. artemisiifolia, but also that
 adaptation may reflect joint effects of release from specialist herbivores
 and novel climatic conditions.
description: climclimatic variables
 across all populations used in the studycompetition
 analysispair-wise competition
 experiment conduced in the studygenetic variation
 analysisdata used for
 quantitative genetic variation analysis
DOI: 10.15468/dl.9aej66
title: Occurrence Download

description: A dataset containing 1577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Batrachochytrium dendrobatidis"
 ]
}

 The dataset includes 1577 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001679-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.0k2s39c
title: Data from: Temporal dynamics of snowmelt nutrient release from snow–plant residue mixtures: an experimental analysis and mathematical model development

description: Reducing eutrophication in surface water is a major environmental
 challenge in many countries around the world. In cold Canadian prairie
 agricultural regions, part of the eutrophication challenge arises during
 spring snowmelt when a significant portion of the total annual nutrient
 export occurs, and plant residues can act as a nutrient source instead of
 a sink. Although the total mass of nutrients released from various crop
 residues has been studied before, little research has been conducted to
 capture fine-timescale temporal dynamics of nutrient leaching from plant
 residues, and the processes have not been represented in water quality
 models. In this study, we measured the dynamics of P and N release from a
 cold-hardy perennial plant species, alfalfa (Medicago sativa L.), to
 meltwater after freeze–thaw through a controlled snowmelt experiment.
 Various winter conditions were simulated by exposing alfalfa residues to
 different numbers of freeze–thaw cycles (FTCs) of uniform magnitude prior
 to snowmelt. The monitored P and N dynamics showed that most nutrients
 were released during the initial stages of snowmelt (first 5 h) and that
 the magnitude of nutrient release was affected by the number of FTCs. A
 threshold of five FTCs was identified for a greater nutrient release, with
 plant residue contributing between 0.29 (NO3) and 9 (PO4) times more
 nutrients than snow. The monitored temporal dynamics of nutrient release
 were used to develop the first process-based predictive model controlled
 by three potentially measurable parameters that can be integrated into
 catchment water quality models to improve nutrient transport simulations
 during snowmelt.
description: Experimental
 dataMeltwater flow and
 solute concentrations recorded during the experiment. The flow rate can be
 obtained using the sample volume and the timing of sample
 collection.Experimental_data_published.xls
DOI: 10.15468/dl.qhbc8z
title: Occurrence Download

description: A dataset containing 5451490 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Venezuela (Bolivarian Republic of)"
 ]
}

 The dataset includes 5451490 records from 1418 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001648-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30009970
title: <i>ATG</i> gene duplication in vertebrates: evolutionary divergence and its functional implications - Code and intermediate result files

description: This is the code and intermediate result files associated with: <i>ATG</i> gene duplication in vertebrates: evolutionary divergence and its functional implications.Please refer to the README file for the contents of each folder.
DOI: 10.6084/m9.figshare.30009970.v1
title: <i>ATG</i> gene duplication in vertebrates: evolutionary divergence and its functional implications - Code and intermediate result files

description: This is the code and intermediate result files associated with: <i>ATG</i> gene duplication in vertebrates: evolutionary divergence and its functional implications.Please refer to the README file for the contents of each folder.
DOI: 10.15468/dl.atfbhp
title: Occurrence Download

description: A dataset containing 53493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Didelphis virginiana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 53493 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006414-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcqrce
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Oryza sativa",
 "Year 1970-2000"
 ]
}

 The dataset includes 50 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006460-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ga269w
title: Occurrence Download

description: A dataset containing 3775301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae, Undaria pinnatifida, Lindavia intermedia)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 0",
 "DecimalLongitude is greater than or equal to -180",
 "DecimalLatitude is greater than or equal to -90",
 {
 "not" : {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate out of range",
 "Issue is Country coordinate mismatch"
 ]
 }
 }
 ]
}

 The dataset includes 3775301 records from 310 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006336-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxmbf8
title: Occurrence Download

description: A dataset containing 2488 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nysius huttoni)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2488 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006461-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwu66h
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "Geometry POLYGON((60.85277 36.24421,97.14723 36.24421,97.14723 50.75579,60.85277 50.75579,60.85277 36.24421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pastinacopsis glacialis"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006463-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8cdp9
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Paris quadrifolia"
 ]
}

 The dataset includes 46 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006462-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/sktlzv/ecazlg
title: replication.tab

description: :unav
DOI: 10.25625/sktlzv/0vjhl3
title: preparation.do

description: :unav
DOI: 10.25625/sktlzv/okt88b
title: Questionnaire.pdf

description: :unav
DOI: 10.25625/sktlzv/tupj3q
title: replication.do

description: :unav
DOI: 10.25625/sktlzv/dv4f5i
title: replication.tab

description: :unav
DOI: 10.25625/sktlzv/faduyw
title: replication.do

description: :unav
DOI: 10.25625/sktlzv/nkj9uf
title: README_Licenses.txt

description: :unav
DOI: 10.25625/sktlzv/wxqsqs
title: heatplot.pkg

description: :unav
DOI: 10.25625/sktlzv/4cg23j
title: outreg_update.sthlp

description: :unav
DOI: 10.25625/sktlzv/abak0l
title: esttab.ado

description: :unav
DOI: 10.25625/sktlzv/pcq3yh
title: _mrsvmat.hlp

description: :unav
DOI: 10.25625/sktlzv/hjawjm
title: colrspace_source.sthlp

description: :unav
DOI: 10.25625/sktlzv/n4fvxd
title: ranktest.ado

description: :unav
DOI: 10.25625/sktlzv/iq6syz
title: colrspace_library_generators.sthlp

description: :unav
DOI: 10.25625/sktlzv/elxai8
title: endline.tab

description: :unav
DOI: 10.15468/dl.pytysr
title: Occurrence Download

description: A dataset containing 26441 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mazus"
 ]
}

 The dataset includes 26441 records from 438 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006459-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/sktlzv/uqutx6
title: ivactest.hlp

description: :unav
DOI: 10.25625/sktlzv/q9bfyo
title: colrspace_library_rgbmaps.sthlp

description: :unav
DOI: 10.25625/sktlzv/t2g1rz
title: Codebook_endline.tab

description: :unav
DOI: 10.25625/sktlzv/3boc0a
title: Replication_COVID.do

description: :unav
DOI: 10.25625/sktlzv/mhvyvh
title: owncodebook.ado

description: :unav
DOI: 10.25625/sktlzv/0aos5h
title: colrspace_cscript.do

description: :unav
DOI: 10.25625/sktlzv/uacsbl
title: hexplot.sthlp

description: :unav
DOI: 10.25625/sktlzv/uavouq
title: ivreg2.hlp

description: :unav
DOI: 10.25625/sktlzv/znbvay
title: baseline.tab

description: :unav
DOI: 10.25625/sktlzv/4x8mpe
title: Codebook_baseline.tab

description: :unav
DOI: 10.25625/sktlzv/esrjhn
title: overid.hlp

description: :unav
DOI: 10.25625/sktlzv/d6fa4q
title: qqvalue.ado

description: :unav
DOI: 10.25625/sktlzv/dbwfus
title: colorpalette.ado

description: :unav
DOI: 10.25625/sktlzv/gjibqi
title: symbolpalette.ado

description: :unav
DOI: 10.25625/sktlzv/sabkdg
title: colorcheck.ado

description: :unav
DOI: 10.25625/sktlzv/qbu4f5
title: mrtab.hlp

description: :unav
DOI: 10.25625/sktlzv/teinwl
title: ivhettest.ado

description: :unav
DOI: 10.25625/sktlzv/cmcdnb
title: estout.ado

description: :unav
DOI: 10.25625/sktlzv/lra5ft
title: colrspace.sthlp

description: :unav
DOI: 10.25625/sktlzv/pvznxd
title: outreg_complete.sthlp

description: :unav
DOI: 10.25625/sktlzv/ip5kzr
title: hh_members.tab

description: :unav
DOI: 10.25625/sktlzv/3hr0u4
title: Replication_RCT.do

description: :unav
DOI: 10.25625/sktlzv/a200mm
title: colorcheck.sthlp

description: :unav
DOI: 10.25625/sktlzv/fcwdus
title: lcolrspace.mlib

description: :unav
DOI: 10.25625/sktlzv/eilh8l
title: qqvalue.sthlp

description: :unav
DOI: 10.25625/sktlzv/fazo3c
title: frmt_opts.sthlp

description: :unav
DOI: 10.25625/sktlzv/j40pfu
title: _mrsvmat.ado

description: :unav
DOI: 10.25625/sktlzv/xgtcwz
title: frmttable.ado

description: :unav
DOI: 10.25625/sktlzv/rq1o63
title: _eststo.hlp

description: :unav
DOI: 10.25625/sktlzv/j1ozzs
title: linepalette.ado

description: :unav
DOI: 10.25625/sktlzv/jrij6t
title: Codebook_hh_members.tab

description: :unav
DOI: 10.25625/sktlzv/0t5xez
title: estadd.ado

description: :unav
DOI: 10.25625/sktlzv/d10oxe
title: backup.trk

description: :unav
DOI: 10.25625/sktlzv/fgistm
title: mrgraph.ado

description: :unav
DOI: 10.25625/sktlzv/3yerlg
title: frmttable.sthlp

description: :unav
DOI: 10.25625/sktlzv/s8gu2r
title: esttab.hlp

description: :unav
DOI: 10.25625/sktlzv/cdizwe
title: Questionnaire_baseline.xlsx

description: :unav
DOI: 10.25625/sktlzv/yq6dfg
title: Questionnaire_endline.xlsx

description: :unav
DOI: 10.25625/sktlzv/zyyoid
title: stata.trk

description: :unav
DOI: 10.25625/sktlzv/mv0rc5
title: outreg.sthlp

description: :unav
DOI: 10.25625/sktlzv/uokjpw
title: overid.ado

description: :unav
DOI: 10.25625/sktlzv/zxtlkr
title: grc1leg.ado

description: :unav
DOI: 10.25625/sktlzv/q3wzhk
title: _eststo.ado

description: :unav
DOI: 10.25625/sktlzv/hcswpg
title: estpost.hlp

description: :unav
DOI: 10.25625/sktlzv/xrbzld
title: grc1leg.hlp

description: :unav
DOI: 10.25625/sktlzv/jii5mi
title: colrspace_library_palettes.sthlp

description: :unav
DOI: 10.25625/sktlzv/bzobq6
title: palettes.hlp

description: :unav
DOI: 10.25625/sktlzv/4qwvoy
title: ivreg2.ado

description: :unav
DOI: 10.25625/sktlzv/1ektfc
title: coefplot.ado

description: :unav
DOI: 10.25625/sktlzv/9aegms
title: ranktest.hlp

description: :unav