cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7185881.v1
title: Effects of shading on leaf physiology and morphology in the ‘Yinhong’ grape plants

description: Abstract Shading is a practical measure to reduce the heat stress to grape trees in the summer. However, inappropriate shading will cause the reduction in leaf photosynthesis and consequently the retardation of growth for the plants or the loss of fruit yield and quality for the mature grape trees. In this study we have used 1-year-old ‘YinHong’ grape plants growing under different levels of shading, ranging from full sunlight 0% to 80% reduction, to investigate their growth, physiological and biochemical responses. The results show that shading rate =45% did not significantly affect grape growth. Shading over 45% reduction of the full sunlight, the growth of the grape plants were started to be inhibited. In addition, soluble protein content, the activities of catalase (CAT), peroxidase (POD) and superoxide dismutase (SOD), chlorophyll content, net photosynthetic rate (Pn), stomatal conductance (Gs), intercellular CO2 concentration (Ci), transpiration rate (Tr), PSII photochemical efficiency (Fv/Fm), PSII potential activity1(Fv/Fo) and photochemical quenching (qP) were decreased, whereas free proline, malondialdehyde (MDA) content, the non-photochemical quenching coefficient (qN) and the ratio of the palisade/spongy tissue were gradually increased. In particular, significant changes in plant growth, photosynthetic and the other physiological and biochemical characteristics were observed under a strong shading.
DOI: 10.6084/m9.figshare.21341176.v1
title: Additional file 1 of Proteomic analysis implicates that postovulatory aging leads to aberrant gene expression, biosynthesis, RNA metabolism and cell cycle in mouse oocytes

description: Supplementary Material 1: Table S1. Detail information of all MS identified proteins and peptides.
DOI: 10.6084/m9.figshare.8240651.v1
title: Additional file 3: of Genetic and morphological divergence among three closely related Phrynocephalus species (Agamidae)

description: Table S3. Loading of the first two axes of a principal components (PC) analysis on 22 morphological variables for both sexes. Size effects are removed in all cases by using residuals from the regressions on SVL. Variables with the main contribution to each factor are in bold. Species with different superscripts differ significantly (Tukey’s test, α = 0.05; a &gt; b &gt; c). (XLSX 14 kb)
DOI: 10.34812/5g8b-hf14
title: Moving Image Archive Version 1
DOI: 10.34812/05y2-xv88
title: Moving Image Archive
DOI: 10.25386/genetics.19775128
title: Supplemental Material for Heppert et al., 2022

description: <b>Supplemental Table 3. RNA-seq database spreadsheet (Excel). </b>Batch-corrected RNA-sequencing data and other data used in comparative analyses.<b> </b><b>Supplemental Table 4. Data mapped to scRNA-seq clusters (Excel). </b>log<sub>2</sub>(FC) values for <i>hnf4g<sup>-/-</sup></i>CV/WTCV,<i> hnf4a<sup>-/-</sup></i>CV/WTCV, <i>hnf4a<sup>-/-</sup>;hnf4g<sup>-/-</sup></i>CR/WTCR are mapped to the gene sets that define intestinal cell types (Wen <i>et al.</i> 2021). <b>Reagents Table (Excel). </b>Lists the genetic tools and sequencing reagents used and generated as a part of this study.
DOI: 10.25386/genetics.19775128.v1
title: Supplemental Material for Heppert et al., 2022

description: <b>Supplemental Table 3. RNA-seq database spreadsheet (Excel). </b>Batch-corrected RNA-sequencing data and other data used in comparative analyses.<b> </b><b>Supplemental Table 4. Data mapped to scRNA-seq clusters (Excel). </b>log<sub>2</sub>(FC) values for <i>hnf4g<sup>-/-</sup></i>CV/WTCV,<i> hnf4a<sup>-/-</sup></i>CV/WTCV, <i>hnf4a<sup>-/-</sup>;hnf4g<sup>-/-</sup></i>CR/WTCR are mapped to the gene sets that define intestinal cell types (Wen <i>et al.</i> 2021). <b>Reagents Table (Excel). </b>Lists the genetic tools and sequencing reagents used and generated as a part of this study.
DOI: 10.6084/m9.figshare.21341589
title: Additional file 1 of Whole-exome sequencing analysis identifies distinct mutational profile and novel prognostic biomarkers in primary gastrointestinal diffuse large B-cell lymphoma

description: Additional file 1: Table S1. Clinicopathological information of 53 pGI-DLBCL patients.
DOI: 10.6084/m9.figshare.21341601
title: Additional file 5 of Whole-exome sequencing analysis identifies distinct mutational profile and novel prognostic biomarkers in primary gastrointestinal diffuse large B-cell lymphoma

description: Additional file 5: Table S5. Summary of IGLL5 and LRP1B mutations in pGI-DLBCL.
DOI: 10.6084/m9.figshare.21341589.v1
title: Additional file 1 of Whole-exome sequencing analysis identifies distinct mutational profile and novel prognostic biomarkers in primary gastrointestinal diffuse large B-cell lymphoma

description: Additional file 1: Table S1. Clinicopathological information of 53 pGI-DLBCL patients.
DOI: 10.6084/m9.figshare.21341592
title: Additional file 2 of Whole-exome sequencing analysis identifies distinct mutational profile and novel prognostic biomarkers in primary gastrointestinal diffuse large B-cell lymphoma

description: Additional file 2: Table S2. Exonic mutation profile of 53 pGI-DLBCL patients.
DOI: 10.6084/m9.figshare.21341592.v1
title: Additional file 2 of Whole-exome sequencing analysis identifies distinct mutational profile and novel prognostic biomarkers in primary gastrointestinal diffuse large B-cell lymphoma

description: Additional file 2: Table S2. Exonic mutation profile of 53 pGI-DLBCL patients.
DOI: 10.6084/m9.figshare.21341601.v1
title: Additional file 5 of Whole-exome sequencing analysis identifies distinct mutational profile and novel prognostic biomarkers in primary gastrointestinal diffuse large B-cell lymphoma

description: Additional file 5: Table S5. Summary of IGLL5 and LRP1B mutations in pGI-DLBCL.
DOI: 10.6084/m9.figshare.16620865
title: Additional file 2 of Construction and investigation of a circRNA-associated ceRNA regulatory network in Tetralogy of Fallot

description: Additional file 2. Table 2 ceRNA regulatory modules.
DOI: 10.6084/m9.figshare.16620865.v1
title: Additional file 2 of Construction and investigation of a circRNA-associated ceRNA regulatory network in Tetralogy of Fallot

description: Additional file 2. Table 2 ceRNA regulatory modules.
DOI: 10.6084/m9.figshare.7185953.v1
title: MOLECULAR DESCRIPTION OF COPPER (I) OXIDE AND COPPER (II) OXIDE

description: The topological index of a molecular structure correlate certain physicochemical properties such as boiling point and stability of that molecular structure. Recently several topological indices have been introduced and studies have shown their association with certain physical and chemical properties of other molecules. Specifically, Zagreb, Atom-bound connectivity (ABC) and Sanskruti indices have been correlated with extent of branching, enthalpy and entropy of some organic molecules. In this study we have calculated Zagreb, Atom-bound connectivity (ABC) and Sanskruti indices (S) for Copper (I) oxide and Copper (II) oxide CuO. Additionally, from the experimentally available data, we calculated entropy and enthalpy per unit cell for both the oxides and compared with Atom-bound connectivity and Sanskruti indices. It appears that these indices have very poor relation with these physical properties in both oxides of copper and they may need some modifications to show considerable compliance as reported in other organic molecules."
DOI: 10.6084/m9.figshare.5619577
title: Lake Catchment Set

description: A freely available data set of inflow lakes’ catchments including lakes, location, shape, area, perimeter, etc. over the Qiangtang Plateau which is a main part of the Tibetan Plateau. The data set is derived from Landset8 images, Google Earth and DEM. It will provide important basic information for researchers to study the changes of meteorology, hydrology and environment and its mechanism in Qinghai-Tibet Plateau.
DOI: 10.34812/rmea-1d47
title: National Bibliography of Scotland Version 2
DOI: 10.6084/m9.figshare.12435452
title: Table S3. Anatomy of two Permian greenschist- to blueschist-facies tectonic mélanges in the Solonker Suture Zone (Inner Mongolia, NE China): Evidences for divergent double subduction and soft collision

description: Table S3: Major oxides and trace elemental analytical results
DOI: 10.6084/m9.figshare.12435452.v1
title: Table S3. Anatomy of two Permian greenschist- to blueschist-facies tectonic mélanges in the Solonker Suture Zone (Inner Mongolia, NE China): Evidences for divergent double subduction and soft collision

description: Table S3: Major oxides and trace elemental analytical results
DOI: 10.6084/m9.figshare.12435455
title: Table S2. Anatomy of two Permian greenschist- to blueschist-facies tectonic mélanges in the Solonker Suture Zone (Inner Mongolia, NE China): Evidences for divergent double subduction and soft collision

description: Table S2: Zircon U–Pb analytical results.
DOI: 10.6084/m9.figshare.23579208
title: Rawdata for Chen et al. microclimate in China

description: Raw data and the R code used in the study of Chen et al.,2024 GEB for microclimate in China.
DOI: 10.6084/m9.figshare.12435455.v1
title: Table S2. Anatomy of two Permian greenschist- to blueschist-facies tectonic mélanges in the Solonker Suture Zone (Inner Mongolia, NE China): Evidences for divergent double subduction and soft collision

description: Table S2: Zircon U–Pb analytical results.
DOI: 10.6084/m9.figshare.23579208.v2
title: Rawdata for Chen et al. microclimate in China

description: Raw data and the R code used in the study of Chen et al.,2024 GEB for microclimate in China.
DOI: 10.6084/m9.figshare.12435458
title: Table S4. Anatomy of two Permian greenschist- to blueschist-facies tectonic mélanges in the Solonker Suture Zone (Inner Mongolia, NE China): Evidences for divergent double subduction and soft collision

description: Table S4: Zircon in-situ Lu–Hf analytical results.
DOI: 10.6084/m9.figshare.12435458.v1
title: Table S4. Anatomy of two Permian greenschist- to blueschist-facies tectonic mélanges in the Solonker Suture Zone (Inner Mongolia, NE China): Evidences for divergent double subduction and soft collision

description: Table S4: Zircon in-situ Lu–Hf analytical results.
DOI: 10.6084/m9.figshare.25250614
title: Used code

description: This data was used to explore how street closures and shared mobility options affect travel behaviour within the city of Ghent. Data for the plans was based on travel behaviour surveys in the city of Ghent.
DOI: 10.6084/m9.figshare.25250614.v1
title: Used code

description: This data was used to explore how street closures and shared mobility options affect travel behaviour within the city of Ghent. Data for the plans was based on travel behaviour surveys in the city of Ghent.
DOI: 10.6084/m9.figshare.7186136
title: Quorum sensing LuxS/autoinducer-2 inhibits Enterococcus faecalis biofilm formation ability

description: Abstract Objective: To investigate the relation between biofilm formation ability and quorum sensing gene LuxS/AI-2. Materials and Methods: Enterococcus faecalis (E. faecalis) standard strain ATCC 29212 was used in the study. Long flanking homology polymerase chain reaction method was used to build the LuxS gene knockout strain. Sequential culture turbidity measurement and CFU counting were used to assess the proliferation ability of E. faecalis after the depletion of LuxS. 96-well plate assay was used to quantify the biofilm formation ability; CLSM was used to observe the attached bacteria areas, while scanning electron microscopy (SEM) was performed to observe biofilm microstructure conditions. Results: LuxS gene knockout strains were successfully constructed and identified. The results showed that proliferation ability of E. faecalis was not affected by the depletion of the luxS gene, and the biofilm formation ability of ΔLuxS 29212 significantly decreased (P&lt;0.05). Conclusions: Collectively, our studies provide the LuxS gene's key role in controlling biofilm formation of E. faecalis, which presented a negative regulation, and furthermore, providing us a possible way to conquer the persistent apical periodontitis.
DOI: 10.6084/m9.figshare.20290982.v1
title: Additional file 3 of Qin Huang formula enhances the effect of Adriamycin in B-cell lymphoma via increasing tumor infiltrating lymphocytes by targeting toll-like receptor signaling pathway

description: Additional file 3: Table S2. KEGG pathway enrichment results
DOI: 10.6084/m9.figshare.7717082
title: Additional file 3: of Integrative analysis based on survival associated co-expression gene modules for predicting Neuroblastoma patientsâ survival time

description: Figure S1. The concordance index of the co-expression 17 unique microarray modules obtained from the training set in three conditions: the training set, testing set, and randomly selected gene modules with equal number of genes in testing set. (ZIP 75 kb)
DOI: 10.6084/m9.figshare.7717247.v1
title: MOESM3 of 13C metabolic flux analysis-guided metabolic engineering of Escherichia coli for improved acetol production from glycerol

description: Additional file 3. Best fit-fluxes and flux confidence intervals.
DOI: 10.6084/m9.figshare.7717310.v1
title: Additional file 3: of Identification and characterization of genes with absolute mRNA abundances changes in tumor cells with varied transcriptome sizes

description: Table S1. Numbers of DEGs identified from the null datasets. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.14526038.v1
title: Additional file 4 of Interaction between early-life pet exposure and methylation pattern of ADAM33 on allergic rhinitis among children aged 3–6 years in China

description: Additional file 4: Table S3. Description of data: Different methylation CpG sites between AR patients and healthy controls.
DOI: 10.6084/m9.figshare.14526038
title: Additional file 4 of Interaction between early-life pet exposure and methylation pattern of ADAM33 on allergic rhinitis among children aged 3–6 years in China

description: Additional file 4: Table S3. Description of data: Different methylation CpG sites between AR patients and healthy controls.
DOI: 10.6084/m9.figshare.19769035
title: 1680.MP4

description: The stability of Flame I-0 in the present study.
DOI: 10.6084/m9.figshare.7186136.v1
title: Quorum sensing LuxS/autoinducer-2 inhibits Enterococcus faecalis biofilm formation ability

description: Abstract Objective: To investigate the relation between biofilm formation ability and quorum sensing gene LuxS/AI-2. Materials and Methods: Enterococcus faecalis (E. faecalis) standard strain ATCC 29212 was used in the study. Long flanking homology polymerase chain reaction method was used to build the LuxS gene knockout strain. Sequential culture turbidity measurement and CFU counting were used to assess the proliferation ability of E. faecalis after the depletion of LuxS. 96-well plate assay was used to quantify the biofilm formation ability; CLSM was used to observe the attached bacteria areas, while scanning electron microscopy (SEM) was performed to observe biofilm microstructure conditions. Results: LuxS gene knockout strains were successfully constructed and identified. The results showed that proliferation ability of E. faecalis was not affected by the depletion of the luxS gene, and the biofilm formation ability of ΔLuxS 29212 significantly decreased (P&lt;0.05). Conclusions: Collectively, our studies provide the LuxS gene's key role in controlling biofilm formation of E. faecalis, which presented a negative regulation, and furthermore, providing us a possible way to conquer the persistent apical periodontitis.
DOI: 10.5281/zenodo.10683077
title: Sea level and wave hindcast for the Northern Adriatic Sea

description: Description: This dataset contains a 27-year sea level and wave hindcast (1994-2020) over the Northern Adriatic Sea generated using the unstructured hydrodynamic model SHYFEM (https://github.com/SHYFEM-model/shyfem) and the spectral wave model WAVEWATCH III (https://polar.ncep.noaa.gov/waves/wavewatch). The numerical simulations were forced by ERA5 meteorological (mean sea level pressure and climate-corrected wind) fields (Benetazzo et al., 2022; https://doi.org/10.3390/w14101590).

Spatial coverage and resolution: 12.2-14.0 latitude; 42.65-45.8 longitude; spatial resolution of 0.025 degrees.

Temporal coverage and resolution: From 1 January 1994 to 31 December 2020 on an hourly basis.

Variables: water_level, significant_wave_height, peak_wave_direction, peak_wave_frequency, wave_mean_period, wave_from_direction.

Fundings: The creation of this dataset was supported by the Autorità di Bacino Distrettuale del Fiume Po in the framework of the project “Approfondimento tecnico-scientifico sui quadri conoscitivi in ambito costiero” and partially funded by the Research Programme Venezia2021, coordinated by CORILA, with the contribution of the Provveditorato for the Public Works of Veneto, Trentino Alto Adige and Friuli Venezia Giulia.

Disclaimer: Regardless of whether the data is quality-controlled or not, the authors do not accept any responsibility for the correctness and/or appropriate interpretation of the data. The correct and appropriate interpretation of the data must follow scientific rules and is always the exclusive responsibility of the users.
DOI: 10.5281/zenodo.10683078
title: Sea level and wave hindcast for the Northern Adriatic Sea

description: Description: This dataset contains a 27-year sea level and wave hindcast (1994-2020) over the Northern Adriatic Sea generated using the unstructured hydrodynamic model SHYFEM (https://github.com/SHYFEM-model/shyfem) and the spectral wave model WAVEWATCH III (https://polar.ncep.noaa.gov/waves/wavewatch). The numerical simulations were forced by ERA5 meteorological (mean sea level pressure and climate-corrected wind) fields (Benetazzo et al., 2022; https://doi.org/10.3390/w14101590).

Spatial coverage and resolution: 12.2-14.0 latitude; 42.65-45.8 longitude; spatial resolution of 0.025 degrees.

Temporal coverage and resolution: From 1 January 1994 to 31 December 2020 on an hourly basis.

Variables: water_level, significant_wave_height, peak_wave_direction, peak_wave_frequency, wave_mean_period, wave_from_direction.

Fundings: The creation of this dataset was supported by the Autorità di Bacino Distrettuale del Fiume Po in the framework of the project “Approfondimento tecnico-scientifico sui quadri conoscitivi in ambito costiero” and partially funded by the Research Programme Venezia2021, coordinated by CORILA, with the contribution of the Provveditorato for the Public Works of Veneto, Trentino Alto Adige and Friuli Venezia Giulia.

Disclaimer: Regardless of whether the data is quality-controlled or not, the authors do not accept any responsibility for the correctness and/or appropriate interpretation of the data. The correct and appropriate interpretation of the data must follow scientific rules and is always the exclusive responsibility of the users.
DOI: 10.6084/m9.figshare.20290982
title: Additional file 3 of Qin Huang formula enhances the effect of Adriamycin in B-cell lymphoma via increasing tumor infiltrating lymphocytes by targeting toll-like receptor signaling pathway

description: Additional file 3: Table S2. KEGG pathway enrichment results
DOI: 10.6084/m9.figshare.16621072.v1
title: Additional file 5 of Genome-wide association study reveals the genetic architecture of root hair length in maize

description: Additional files 5: Supplemental Table 3. Pathways associated with decreased hair length at statistical significance P &lt; 0.05.
DOI: 10.6084/m9.figshare.22045403
title: Dataset for “Haplotype-resolved, chromosomal-level assembly of wasabi (Eutrema japonicum) genome"

description: The files of organelle genomes, structure annotation of BUSCO genes (gff format), predicted CDS and protein sequences of BUSCO genes (fasta format), and BUSCO genes list (excel format), and TE annotation result by RepeatMasker
DOI: 10.6084/m9.figshare.22045403.v1
title: Haplotype-resolved, chromosomal-level assembly of wasabi (Eutrema japonicum) genome

description: In the present study, we generated a chromosome-level and haplotype-resolved reference genome for <em>E. japonicum</em> using PacBio, Illumina, and Hi-C sequencing data.
DOI: 10.6084/m9.figshare.23266058.v1
title: Data for "Increase in convective Extreme El Niño events in a CO2 removal scenario"

description: Data for "Increase in convective Extreme El Niño events in a CO2 removal scenario"
DOI: 10.6084/m9.figshare.23266058
title: Data for "Increase in convective Extreme El Niño events in a CO2 removal scenario"

description: Data for "Increase in convective Extreme El Niño events in a CO2 removal scenario"
DOI: 10.6084/m9.figshare.22565095
title: 20230406_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.22565095.v1
title: 20230406_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.23261744
title: Bus trip behaviours against COVID-19 in China

description: This dataset contains participant responses to a survey which focuses on bus passenger behaviors in the post-pandemic period (i.e. post PP) and in the critical pandemic period (i.e. critical PP) in China. Post PP refers to the date after January 1st in 2023 when the peak of infecting COVID-19 has receded and China government announced its end. Critical PP describes the last three months in 2022, where new infection cases increase rapidly, causing significant risk of epidemic infection when passengers are riding a bus. The questionnaire was conducted offline in Suzhou Industry Park between March 7th and 10th 2023, collecting a total of 656 samples.
DOI: 10.6084/m9.figshare.23261744.v2
title: Bus trip behaviours against COVID-19 in China

description: This dataset contains participant responses to a survey which focuses on bus passenger behaviors in the post-pandemic period (i.e. post PP) and in the critical pandemic period (i.e. critical PP) in China. Post PP refers to the date after January 1st in 2023 when the peak of infecting COVID-19 has receded and China government announced its end. Critical PP describes the last three months in 2022, where new infection cases increase rapidly, causing significant risk of epidemic infection when passengers are riding a bus. The questionnaire was conducted offline in Suzhou Industry Park between March 7th and 10th 2023, collecting a total of 656 samples.
DOI: 10.6084/m9.figshare.23261744.v1
title: Bus trip behaviours in China

description: This dataset contains participant responses to a survey which focuses on bus passenger behaviors in the post-pandemic period (i.e. post PP) and in the critical pandemic period (i.e. critical PP) in China. Post PP refers to the date after January 1st in 2023 when the peak of infecting COVID-19 has receded and China government announced its end. Critical PP describes the last three months in 2022, where new infection cases increase rapidly, causing significant risk of epidemic infection when passengers are riding a bus. The questionnaire was conducted offline in Suzhou Industry Park between March 7th and 10th 2023, collecting a total of 656 samples.
DOI: 10.5281/zenodo.7988537
title: 8-9D mAb

description: Map and model data for 8-9D
DOI: 10.5281/zenodo.7988536
title: 8-9D mAb

description: Map and model data for 8-9D