cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28014452.v2
title: Supplementary_material_of_identify_keywords_and_search_strategy.docx

description: File consists of:Identify keywords with PICO frameworkSearch strategy on database articlesThis file is an integral part of the literature search method of our article entitled "Effectiveness of health education in improving medication adherence in hypertensive patients: A systematic review and meta-analysis"
DOI: 10.6084/m9.figshare.c.3609692_d4
title: Additional file 4: Table S3. of Characterization of the watercress (Nasturtium officinale R. Br.; Brassicaceae) transcriptome using RNASeq and identification of candidate genes for important phytonutrient traits linked to human health

description: Raw abundance estimates for each locus and sample in the glucosinolate differential expression comparison. (XLSX 3990 kb)
DOI: 10.6084/m9.figshare.c.3609710_d4
title: Additional file 18: Table S9. of ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins

description: P- and q-values for linear mixed models, only including individuals with BMI
DOI: 10.6084/m9.figshare.c.3609710_d5
title: Additional file 3: Table S2. of ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins

description: P- and q-values for PCA. This spreadsheet contains the p-values and q-values for associations of the top 100 PCs to ABO and secretor status consider 5 different ordination techniques (a separate tab for each). The ordination method for each table and the column description within each table are described in the document. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.c.3609761_d2
title: MOESM2 of Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum

description: Additional file 2. End residual and products concentration from 95Â g/L cellulose during the bioreactor fermentation. The strains grown on minimal medium in bioreactor with pH regulation. Error bars represent one standard deviation, nÂ =Â 3. This is data for the end point after 303Â h of incubation.
DOI: 10.6084/m9.figshare.c.3609710_d13
title: Additional file 11: Table S4. of ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins

description: P- and q-values for linear mixed models, controlling for ancestry. This table contains the p-values and q-values for the linear mixed models relating the abundances of the common OTUs and collapsed taxa to ABO and secretor status. Models 1-9 are described fully in the methods section, but a brief description of each is included below. These models also include the top 5 principal component loadings as fixed effects to control for ancestry. P-values were calculated by comparing a full model to a reduced model, which consisted of only the top 5 PC loadings (as fixed effects) and the random effects for family and twin status. Q-values were calculated within each model separately. (XLSX 237Â kb)
DOI: 10.6084/m9.figshare.c.3609773_d1
title: Additional file 5: of Effect of 90Sr internal emitter on gene expression in mouse blood

description: IPA upstream biological regulators table with z-scores , details of Fig.Â  5. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3609773_d2
title: Additional file 4: of Effect of 90Sr internal emitter on gene expression in mouse blood

description: IPA biological functions table with z-scores , details of Fig.Â  3. (XLS 99 kb)
DOI: 10.6084/m9.figshare.c.3609761_d3
title: MOESM3 of Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum

description: Additional file 3. List of mutations among the strains AG553, AG601 and LL1210 of Clostridium thermocellum. SNV single nucleotide variation; CDS coding region.
DOI: 10.6084/m9.figshare.c.3609710_d15
title: Additional file 19: Table S10. of ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins

description: ABO alleles in the TwinsUK cohort. The phased SNPs used to call ABO status are listed, along with the haplotype count and frequency within the TwinsUK samples. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3609761_d4
title: MOESM4 of Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum

description: Additional file 4. Proteomic data of strains wild-type, AG553, AG553, AG601 and LL1210 of Clostridium thermocellum.
DOI: 10.6084/m9.figshare.c.3609710_d16
title: Additional file 16: Table S8. of ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins

description: Featured identified by MGSDA. This supplemental file contains the features identified by MGSDA as being predictive of ABO status, secretor status, or ABO status in secretors. Each tab contains the feature identified (may be an OTU or collapsed taxonomic identification) as well as the taxonomy (relevant for OTUs). Each tab contains the results for a different implementation of MGSDA, described further in the document. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3609773_d5
title: Additional file 2: of Effect of 90Sr internal emitter on gene expression in mouse blood

description: Differentially expressed genes in the study. (XLS 3484 kb)
DOI: 10.6084/m9.figshare.c.3609803_d4
title: Additional file 6: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

description: Bacterial groups at genus-like level in each CAG. (XLSX 863Â kb)
DOI: 10.6084/m9.figshare.c.3609824_d2
title: Additional file 6: of De novo transcriptome sequence and identification of major bast-related genes involved in cellulose biosynthesis in jute (Corchorus capsularis L.)

description: Primer sequences of randomly selected genes involving in cellulose biosynthesis and 18S RNA genes used for RT-qPCR. (XLS 19 kb)
DOI: 10.6084/m9.figshare.c.3609851_d1
title: Additional file 2: of The thorax of the cave cricket Troglophilus neglectus: anatomical adaptations in an ancient wingless insect lineage (Orthoptera: Rhaphidophoridae)

description: Thoracic muscles of different representatives of Polyneoptera homologized following nomenclature by [ 36 ]. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3609854_d1
title: MOESM4 of Impact of aging on host immune response and survival in melanoma: an analysis of 3 patient cohorts

description: Additional file 4: Table S4. Immunoregulatory gene expression of 84 IMCG primary melanomas.
DOI: 10.6084/m9.figshare.c.3609854_d2
title: MOESM2 of Impact of aging on host immune response and survival in melanoma: an analysis of 3 patient cohorts

description: Additional file 2: Table S2. Clinicopathologic features of 84 IMCG and 43 TCGA primary melanomas in gene expression analysis.
DOI: 10.6084/m9.figshare.c.3609803_d8
title: Additional file 10: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

description: Taxa that are found in more than 50Â % of the subjects in any cluster (shown in Additional file 8) with significantly difference between adult 1 and adult 2 clusters. (XLSX 857Â kb)
DOI: 10.6084/m9.figshare.c.3609824_d5
title: Additional file 3: of De novo transcriptome sequence and identification of major bast-related genes involved in cellulose biosynthesis in jute (Corchorus capsularis L.)

description: Pathway assignment based on Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway database. (XLS 241 kb)
DOI: 10.6084/m9.figshare.c.3609854_d3
title: MOESM3 of Impact of aging on host immune response and survival in melanoma: an analysis of 3 patient cohorts

description: Additional file 3: Table S3. A Significant gene expression differences with aging in the IMCG primary melanoma cohort (n = 84). B Significant gene expression differences with aging in the TCGA primary melanoma cohort (n = 43).
DOI: 10.6084/m9.figshare.c.3609803_d14
title: Additional file 17: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

description: PCR primers for detection of each species. (XLSX 857Â kb)
DOI: 10.6084/m9.figshare.c.3609878_d1
title: Additional file 2: of TumorTracer: a method to identify the tissue of origin from the somatic mutations of a tumor specimen

description: Contains tables of the data matrices used for training and testing the two methods described, as well as the data matrices from two validation data sets. (XLSX 12273 kb)
DOI: 10.6084/m9.figshare.c.3609866_d4
title: Additional file 3: Table S2. of Recombination events among virulence genes in malaria parasites are associated with G-quadruplex-forming DNA motifs

description: Recombination breakpoints occurring in P. falciparum 3D7 and Dd2 strains during long-term culture. Experimentally determined breakpoints were collated from Bopp et al. and Claessens et al. [11, 12]. For each breakpoint the following is listed: genomic location in the 3D7 v3 genome assembly (chromosome number and breakpoint start and end co-ordinates on that chromosome), the length of the breakpoint if not mapped to single-base-pair resolution, the type of breakpoint (translocation or indel), whether the recombination event that breakpoint was involved in is var-associated, whether the recombination event that breakpoint was involved in is subtelomeric, which publication the breakpoint data was taken from and which recombination event that breakpoint belongs to. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3609866_d5
title: Additional file 4: Table S3. of Recombination events among virulence genes in malaria parasites are associated with G-quadruplex-forming DNA motifs

description: Distances between recombination breakpoints in P. falciparum 3D7 and their nearest PQS. Recombination breakpoints and PQSs shown here are detailed in Additional file 1: Table S1 and Additional file 2: Table S2 respectively. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3609887_d1
title: Additional file 1: of Uncommon nucleotide excision repair phenotypes revealed by targeted high-throughput sequencing

description: Spectrum of previously identified variations within the validation cohort of 11 patients. 11 patients already tested by Sanger sequencing of ERCC6(CSB) and/or ERCC8(CSA) genes were explored by targeted NGS strategy. All 63 previously identified single base variations were identified in their correct heterozygous/homozygous state. A heterozygous 4.6 Mb deletion of chromosome 10q11, encompassing the whole ERCC6(CSB) gene, was clearly detected but the method was not sensitive enough to detect an ERCC6(CSB) deletion limited to the first two exons of the gene. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3609803_d16
title: Additional file 7: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

description: Cell number of bacteria in vitro assay. (XLSX 855Â kb)
DOI: 10.6084/m9.figshare.c.3609866_d6
title: Additional file 8: Table S6. of Recombination events among virulence genes in malaria parasites are associated with G-quadruplex-forming DNA motifs

description: Putative G-quadruplex-forming sequences in the P. berghei ANKA genome (version 3). Genome searched using ‘QGRS Mapper’ [35] with the parameters G3 N(0–11) G3 N(0–11) G3 N(0–11) G3 [17]. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3609803_d17
title: Additional file 15: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

description: List of predicted transporters in Additional file 13. (XLSX 879Â kb)
DOI: 10.6084/m9.figshare.c.3609866_d7
title: Additional file 5: Table S4. of Recombination events among virulence genes in malaria parasites are associated with G-quadruplex-forming DNA motifs

description: Putative G-quadruplex-forming sequences in the P. falciparum Dd2 genome. Genome searched using ‘QGRS Mapper’ [35] with the parameters G3 N(0–11) G3 N(0–11) G3 N(0–11) G3 [17]. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3609887_d3
title: Additional file 4: of Uncommon nucleotide excision repair phenotypes revealed by targeted high-throughput sequencing

description: POLH founder mutation in Northern Spain. Haplotype analysis was performed on the 6 XP-variant patients coming from Northern Spain with mutations in the POLH gene (chr6:43,543,878-43,588,260[hg19]). Despite a genome wide study using the Illumina HumanOmniExpress-24 SNP chip, the table focuses on the SNP localized in the vicinity of the POLH gene on chromosome 6 (between 42,000,000 and 44,000,000). Patient #11, patient #12 and her sister and patient #13 and his sister were homozygous for the c.764 + 1G &gt; A mutation. Patient #10 was compound heterozygous c.[764 + 1G &gt; A(;)1445C &gt; A]. Parents of patient #13 were heterozygous carriers of the splice mutation. The five homozygous patients share a region of homozygosity (975 kb) including the POLH gene (from rs3800291 at position 42,751,457 to rs866236 at position 43,726,956). The compound heterozygous patient #10 and the carrier parents have at least one allele in common with the founder haplotype all along the 975 kb region. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3609911_d2
title: Additional file 4: of Expression of epigenetic machinery genes is sensitive to maternal obesity and weight loss in relation to fetal growth in mice

description: Expression level and adjusted P values of 92 genes in the fetal liver, placental labyrinth, and junctional zone. We assessed the expression level of 60 epigenetic machinery genes and 32 genes implicated in metabolism or development in CTRL, OB, and WL females at E18.5 using TaqMan low-density arrays. Data are represented as mean expression levels ± St.Dev. *—differentially expressed genes. NA—non-amplified. Significant differences (P adj
DOI: 10.6084/m9.figshare.c.3609929_d1
title: Additional file 2: of Molecular evolution of candidate male reproductive genes in the brown algal model Ectocarpus

description: Primers used for polymerase chain reaction. (XLS 8Â kb)
DOI: 10.6084/m9.figshare.c.3609911_d3
title: Additional file 2: of Expression of epigenetic machinery genes is sensitive to maternal obesity and weight loss in relation to fetal growth in mice

description: List of the gene symbol and name, and the design strand and TaqMan® Gene Expression Assay IDentification reference for the 96 genes studied on the Custom TLDA.
DOI: 10.6084/m9.figshare.c.3609929_d2
title: Additional file 5: of Molecular evolution of candidate male reproductive genes in the brown algal model Ectocarpus

description: Pairwise d N /d S matrix for Esi0130_0068 generated with PAML (runmode = −2). (XLS 8 kb)
DOI: 10.6084/m9.figshare.c.3609923_d2
title: MOESM1 of On the design of a DEA-based device to pot
entially assist lower leg disorders: an analytical and FEM investigation accounting for nonlinearities of the leg and device deformations

description: Additional file 1. Final calf volume values in liter after wrapping and actuating the ACB.
DOI: 10.6084/m9.figshare.c.3609929_d3
title: Additional file 1: of Molecular evolution of candidate male reproductive genes in the brown algal model Ectocarpus

description: Ectocarpus male gamete specific genes. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3609929_d4
title: Additional file 3: of Molecular evolution of candidate male reproductive genes in the brown algal model Ectocarpus

description: Sequence accession numbers and details. (XLS 9Â kb)
DOI: 10.6084/m9.figshare.c.3609947_d1
title: Additional file 4: Table S3. of Transcriptome analysis of complex I-deficient patients reveals distinct expression programs for subunits and assembly factors of the oxidative phosphorylation system

description: Top five percent complex I co-expressing genes. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3609929_d5
title: Additional file 4: of Molecular evolution of candidate male reproductive genes in the brown algal model Ectocarpus

description: Characteristics of genes of interest used for the pairwise d N /d S analysis. (XLS 10Â kb)
DOI: 10.6084/m9.figshare.c.3609947_d2
title: Additional file 3: Table S2. of Transcriptome analysis of complex I-deficient patients reveals distinct expression programs for subunits and assembly factors of the oxidative phosphorylation system

description: OXPHOS enriched cluster of genes. (XLSX 5387 kb)
DOI: 10.6084/m9.figshare.c.3609962_d6
title: Additional file 2: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

description: CNVRs detected in Nelore HD SNP genotyping data. (XLSX 1160 kb)
DOI: 10.6084/m9.figshare.c.3609962_d7
title: Additional file 1: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

description: CNVs detected in Nelore HD SNP genotyping data. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3609962_d8
title: Additional file 10: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

description: CNVs reported by Xu et. al (2014a) to be associated with milk production traits in Holsteins also observed in Nelore cattle. (XLSX 289 kb)
DOI: 10.6084/m9.figshare.c.3609962_d9
title: Additional file 4: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

description: CNVs detected in Nelore NGS Data. (XLSX 450 kb)
DOI: 10.6084/m9.figshare.c.3609962_d10
title: Additional file 6: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

description: CNVs detected in HD SNP genotyping data from the eight resequenced bulls. (XLSX 648 kb)
DOI: 10.6084/m9.figshare.c.3610001_d2
title: Additional file 2: of Structuring evolution: biochemical networks and metabolic diversification in birds

description: Speciesâ   binary metabolic networks. This appendix contains binary metabolic networks for each of the species included in the study. (XLSX 123Â kb)
DOI: 10.6084/m9.figshare.c.3610013_d1
title: Additional file 1: Table S1. of Similar striatal gene expression profiles in the striatum of the YAC128 and HdhQ150 mouse models of Huntingtonâ  s disease are not reflected in mutant Huntingtin inclusion prevalence

description: Genes altered in expression with age common to both WT and YAC128 caudate. (XLS 75 kb)
DOI: 10.6084/m9.figshare.c.3610001_d3
title: Additional file 3: of Structuring evolution: biochemical networks and metabolic diversification in birds

description: Majority rule consensus phylogeny of species included in the study. This appendix contains the Newick tree format of the majority rule consensus phylogeny visually presented in Fig.Â 4, 5, 6, 7 and 8. The tree is based on 1,000 randomly sampled trees from the Hackett All Species pseudo-posterior distribution downloaded from birdtree.org that is based on Jetz et al. 2012. (TXT 20Â kb)
DOI: 10.6084/m9.figshare.c.3609962_d11
title: Additional file 9: of Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits

description: CNVRs overlapping with previously detected QTLs from the Bovine QTL Database. (XLSX 2973 kb)
DOI: 10.6084/m9.figshare.c.3610025_d6
title: Additional file 7: Table S6. of The structure and diversity of human, animal and environmental resistomes

description: Metadata for samples collected from pharmaceutically polluted environments. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d2
title: Additional file 4: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S2. Loadings of the protein PCA shown in Fig.Â 2b of the main document. (XLS 241 kb)
DOI: 10.6084/m9.figshare.c.3610013_d7
title: Additional file 7: Table S5. of Similar striatal gene expression profiles in the striatum of the YAC128 and HdhQ150 mouse models of Huntingtonâ  s disease are not reflected in mutant Huntingtin inclusion prevalence

description: The 869 probesets that are differentially expressed between YAC128 and HdhQ150 striata. (XLS 137 kb)
DOI: 10.6084/m9.figshare.c.3610025_d7
title: Additional file 4: Table S3. of The structure and diversity of human, animal and environmental resistomes

description: Beta-diversity analysis of resistance genes, MGEs and taxonomic compositions across environments. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d3
title: Additional file 12: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S10. List of metabolic components, retentions indices and mass-to-charge ratios which were applied for absolute quantification of metabolites. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3610025_d8
title: Additional file 2: Table S1. of The structure and diversity of human, animal and environmental resistomes

description: Relative abundance of antibiotic resistance genes in air samples. (XLSX 68Â kb)
DOI: 10.6084/m9.figshare.c.3610061_d1
title: Additional file 5: of New data from basal Australian songbird lineages show that complex structure of MHC class II Î˛ genes has early evolutionary origins within passerines

description: Primer sequences trialled in this study. Standard International Union of Biochemistry (IUB) codes are used for degenerate primers. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d4
title: Additional file 7: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S5. Normalised experimental data of metabolite, protein and phosphopeptide levels. (XLSX 1210 kb)
DOI: 10.6084/m9.figshare.c.3610064_d2
title: Additional file 1: of Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome

description: HSB, primer and BAC clone information. (XLSX 134Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d5
title: Additional file 6: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S4. Loadings of the phosphoprotein PCA shown in Fig.Â 2c of the main document. (XLS 66 kb)
DOI: 10.6084/m9.figshare.c.3610064_d3
title: Additional file 4: of Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome

description: Gene synteny between chicken and dragon (XLSX 2298Â kb)
DOI: 10.6084/m9.figshare.c.3610043_d6
title: Additional file 13: of Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana

description: Table S11. Proteomics minimal information for reproducibility of experiments. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3610061_d3
title: Additional file 1: of New data from basal Australian songbird lineages show that complex structure of MHC class II Î˛ genes has early evolutionary origins within passerines

description: MHC class II Î˛ exon 2 alleles identified through cloning and 454 sequencing methods. Sample size, range and total number of alleles per species, and putative number of loci per species are given. (XLSX 8Â kb)