cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5vg70.3/5.3
title: Wall et al. OA-Light seawater temperature and salinity

description: This data file contains a log of seawater temperature and
salinity for treatment tanks over the course of the experiment.
DOI: 10.5061/dryad.74631/1
title: Mercurialis annua SNP file

description: This VCF file includes the filtered SNP dataset for 40 Mercurialis annua samples (578,125 SNPs). Information on gene capture probe, ancestral state (by comparison with M. huetti outgroup), and SnpEff annotation is provided in the VCF INFO field.
DOI: 10.5061/dryad.7dd43/1
title: 2400 male-female mating pairs outcomes

description: Males&Females.xlsx
This file contains all information of each male-female pair, along with PCA for reproductive organs and behavior.

The columns are labelled: 
Line – inbred line (12)
in.out – inbred/outbred status (outbred all belong to one line)
Male.ES – male eyespan
Male.Thorax
Testes
AG – Accessory Glands
Female.ID
Female.ES – female eyespan
Accept.Reject – given that a mating attempt occurred
Male.ID
Attempt – was there a mating attempt, yes or no
Follow – a behaviour
Bob – a behavior
Grapple – a behavior
Time.to.mate – how many seconds untila mating attempt
Date – block structure
Time.in.pair – same as Time.to.mate except that those where there was no mating attempt are labelled 900 seconds
PC.Reporgan – PCA Testes and Accessory Glands
PC1Beh.min – PCA of three behaviours per minute
PC2Beh.min - PCA of three behaviours per minute
DOI: 10.5061/dryad.8b28n/1
title: Masterfile

description: Different data sets (biochemical data for calculation of retention rates in consumers, feeding rates, stoichiometry, etc.) are stored in different excel sheets.
DOI: 10.5061/dryad.94k15/1
title: Data-Morante-Filho et al. JAE 2017

description: Bird phylogenetic data used to evaluate the relationship with the amount of forest cover in each landscape.
DOI: 10.5061/dryad.d7839/1
title: PartitionAnalysisTimeMC.FigS1

description: Figure S1
DOI: 10.5061/dryad.d7839/2
title: PartitionAnalysisTimeMC.TableS1S2

description: Tables S1 & S2
DOI: 10.5061/dryad.d7839/3
title: MakeTree.R
DOI: 10.5061/dryad.d7839/4
title: RelClock.R
DOI: 10.5061/dryad.f3sm9/1
title: batch_1_miss25MigrantsRepAcousHistSexRem_9jun2016.recode

description: VCF file containing the genotypes for the baseline samples EXCLUDING potential migrants (total N = 273 individuals; see table 1 and manuscript for details of which sites were considered baseline and how the migrants were identified) at 6136 SNP markers retained after quality filters described in the manuscript.
DOI: 10.5061/dryad.f56v8/1
title: Snow crab recapture data 2006-2008, Conception Bay

description: Snow crabs from Conception Bay that were recaptured after a tagging study initiated in 2006. DAL= days at large, M= disease status at tagging (0=healthy, 1=diseased), disease (bitter crab disease) was diagnosed by visual assessment of the carapace. Data on crabs that were not recaptured is excluded.
DOI: 10.5061/dryad.f56v8/2
title: MD_Striped bass mark-recapture mycobacteriosis

description: Data from tag-recapture study of striped bass in Chesapeake Bay, Maryland from 2007-2011. Tag=tag identifier, rel_date= release date, dal= days at large (between tagging and recapture, NA animals were not recaptured), tl= total length at tagging, rel_dc= disease status at release (0= healthy, 1= mild diseased, 2=moderate disease, 3=severe disease, see manuscript for further description).
DOI: 10.5061/dryad.f56v8/3
title: VA_Striped bass mark-recapture mycobacteriosis

description: Data from tag-recapture study of striped bass in Chesapeake Bay, Virginia from 2005-2014. Tag=tag identifier, rel_date= release date, dal= days at large (between tagging and recapture, NA animals were not recaptured), tl= total length at tagging, rel_dc= disease status at release (0= healthy, 1= mild diseased, 2=moderate disease, 3=severe disease, see manuscript for further description).
DOI: 10.5061/dryad.f56v8/4
title: American lobster Recapture data- LIS - Epizootic shell disease

description: Data on recaptures only from American lobsters tagged and recaptured by the Millstone Environmental Lab in Millstone, CT. Data file includes: tag_num: unique tag identifier, rel_month: month of tagging, rel_day: day of tagging, rel_year: year of tagging, sex, rel_carapace_length: carapace length at tagging, male:1 if male, ovig: 1 if ovigerous female at tagging, female: 1 if non-ovigerous female at tagging, dal: days at large between tagging and release, disease_status: disease status at tagging (0 is healthy, 1 is mildly diseased (&lt;10% of carapace with lesions), 2 is moderately diseased (10-50% of carapace with lesions), 3 is severely diseased (&gt;50% of carapace with lesions)), recap_date: date a recapture. Data on animals that were tagged and not recaptured or were recaptured in other locations are not included in this dataset.
DOI: 10.5061/dryad.hn07q/1
title: Flory et al herbaceous species and light data

description: Biomass data for invasive Microstegium vimineum and native herbaceous species. Percent light data for ground level and half meter above vegetation.
DOI: 10.5061/dryad.j4387/1
title: Data_Triadic male-infant-male interaction serves in bond maintenance in male Assamese macaques

description: Data_Model 1: MIMIs and time spent in close proximity after a subordinate male approached a more dominant male Data_Model 2: MIMIs and time spent in close proximity after a dominant male approached a subordinate male        Data_Model 3: Effect of relationship strength on MIMI frequency                                                               Data_Model 4: Long-term effect of MIMI on future time spent in close proximity                                                     Data_Model 5: The effect of affiliative relationship strength on the MIMI rate of the consecutive year
DOI: 10.5061/dryad.k0gq6/139
title: E_tertulia_38.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/141
title: E_viridiflava_30.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/142
title: E_zenobia_442.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k46r2/1
title: Endogenous Model

description: Netlogo file containing code, user interface, and information tab describing this model and how to use it. This model simulates boom-bust dynamics of a butterfly species via endogenous consumer-resource density dependent dynamics.
DOI: 10.5061/dryad.k46r2/2
title: Exogenous Model

description: Netlogo file containing code, user interface, and information tab describing this model and how to use it. This model simulates boom-bust dynamics of a butterfly species via exogenous dynamics including a population ceiling and environmental stochasticity.
DOI: 10.5061/dryad.kr137/3
title: Measuring change in sperm velocity for sperm incubated in their own seminal fluid vs rivals seminal fluid

description: Chinook salmon ejaculates were experimentally manipulated, separating sperm from seminal fluid and then recombining sperm with either seminal fluid from the same male or from a rival male. Ejaculates were collected from male chinook salmon taken at both stages of a two-stage social manipulation experiment. Social dominance was determined within each pair using video recordings of aggressive behavior. Sperm velocity was measured using Computer Assisted Sperm Analysis.
DOI: 10.5061/dryad.kr137/4
title: Comparing fertilisation success for males of different social status and across seminal fluid treatments

description: Sperm competition trials were conducted, each trial using a single female and two male chinook salmon from a two-stage social manipulation experiment. Trials were also conducted using two seminal fluid treatments, (1) milt was unmanipulated, (2) seminal fluid was switched between the males in each trial. This data file contains sperm velocity measurements and paternity share data for each male. The paternity share of each male was determined using mircosatellite loci. Social dominance was determined within each pair using video recordings of aggressive behavior. Sperm concentration was measured using a haemocytometer. Sperm velocity was measured using Computer Assisted Sperm Analysis.
DOI: 10.5061/dryad.m1m0p/1
title: Simulated Metagenomics Reads
DOI: 10.5061/dryad.m457d/1
title: Chromatograms of length-variant heterozygotes in Milicia at At103

description: This Sequencher file contains, for each length-variant heterozygote, (i) the forward and reverse At103 chromatograms which were assembled into contigs: the double peaks were called either using the "Call secondary function" or manually; (ii) the two haplotypes (a and b) reconstructed by combining the information carried by the forward and reverse chromatograms using the program Champuru (http://jfflot.mnhn.fr/champuru/). These samples of the genus Milicia were sequenced at the nuclear region At103.
DOI: 10.5061/dryad.m457d/2
title: SNP_and_SSR_Milicia_genotypes

description: This file presents the genotypes (at 7 nuclear SSR and 62 nuclear SNP) of Milicia samples collected in West Africa.
DOI: 10.5061/dryad.mn1pp/1
title: DATA_DEPOSIT_MOLERAT_KINEMATICS_VAN_WASSENBERGH_HEINDRYCKX_ADRIAENS

description: This Excel workbook contains the individual and raw kinematic profiles used for the analyses in the manuscript.  More information on the content can be found on the worksheet INFO.
DOI: 10.5061/dryad.n99n3/1
title: Sundin et al. 2017 Behav Ecol Suppl data

description: Raw-data
DOI: 10.5061/dryad.ns8q3/10
title: Chrom_10_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/11
title: Chrom_11_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/12
title: Chrom_12_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/13
title: Chrom_13_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/14
title: Chrom_14_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/6
title: Chrom_6_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/7
title: Chrom_7_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/8
title: Chrom_8_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/9
title: Chrom_9_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.qr818/1
title: APPENDIX 2 - species of Nephropidae - Tshudy et al.

description: Pre-Holocene stratigraphic distribution of species of the family Nephropidae (sensu De Grave et al., 2009), inclusive of the former Thaumastochelidae.
DOI: 10.5061/dryad.qr818/2
title: APPENDIX 3 - data for Vail Curve method - Tshudy et al.

description: Data and calculations for Figure 6; “*” indicates standard for normalizing as per the Vail Curve method of Tshudy (2003).
DOI: 10.5061/dryad.r3408/2
title: Tabela_ChesterCalling

description: Call parameters from chester zoo golden mantella captive colony
DOI: 10.5061/dryad.r3408/3
title: Tabela_MitsinjoCalling

description: Call parameters of vocalization of Mitisnjo breeding center golden matella captive colony
DOI: 10.5061/dryad.r3408/4
title: Tabela_MangabeCalling

description: Call parameters from wild golden mantella populations from Mangabe
DOI: 10.5061/dryad.r3408/5
title: TI_Madagascar

description: Tonic immobility response and morphometric data of golden mantellas frogs from Madagascar
DOI: 10.5061/dryad.rv3tv/1
title: S1_new
DOI: 10.5061/dryad.ts57v/1
title: Bioassess bird data

description: Landscape variables and avian point-count species richness data collected in the BioAssess project 2001-2002 in eight European countries
DOI: 10.5061/dryad.v5375/1
title: Histogram size

description: Data file to use in R code 'Stats_GLMMs'. This contains information on the size distances of all the eggs measured in the study.
DOI: 10.5061/dryad.v5375/2
title: Histogram shape

description: Data file to use in R code 'Stats GLMMs'. Contains information about egg shape distances for all the eggs measured in the study.
DOI: 10.5061/dryad.v5375/3
title: Average size for random_new

description: Data file with information on egg size for each of the eggs in our sample. This file is meant to be used in the R code 'Size analysis_R_Step2'.
DOI: 10.5061/dryad.v5375/4
title: Average shape for random

description: Data file with information on egg shape for each of the eggs in our sample. This file is meant to be used in the R code 'Shape analysis_R_Step2'.
DOI: 10.5061/dryad.v5375/5
title: Stats_GLMMs_Shape and Size

description: R markdown file describing all the final statistical analyses performed in the manuscript (e.g. shown in Table 1).
DOI: 10.5061/dryad.v5375/6
title: Shape analysis_R_Step2

description: R markdown file showing how we calculated shape distances between eggs.
DOI: 10.5061/dryad.vq021/1
title: data_dryad-Couchoux_etal-Boldness_affects_response_to_alarm_calls

description: Data for basal vigilance and for vigilance during playback of alarm calls
DOI: 10.5061/dryad.12751/23
title: Appendix Figure 5

description: The Data (an Origin file) used for Appendix Figure 5
DOI: 10.5061/dryad.12751/24
title: Appendix Figure 6

description: The Data (an Origin file) used for Appendix Figure 6
DOI: 10.5061/dryad.12751/25
title: Appendix Figure 11

description: The Data (an Origin file) used for Appendix Figure 11
DOI: 10.5061/dryad.12751/26
title: Appendix Figure 12

description: The Data (an Origin file) used for Appendix Figure 12
DOI: 10.5061/dryad.12751/27
title: Appendix Figure 13

description: The Data (an Origin file) used for Appendix Figure 13
DOI: 10.5061/dryad.12751/28
title: Appendix Figure 16

description: The Data (an Origin file) used for Appendix Figure 16
DOI: 10.5061/dryad.12751/29
title: Appendix Figure 17

description: The Data (an Origin file) used for Appendix Figure 17
DOI: 10.5061/dryad.12751/30
title: Appendix Figure 18

description: The Data (an Origin file) used for Appendix Figure 18
DOI: 10.5061/dryad.12751/31
title: Appendix Figure 19

description: The Data (an Origin file) used for Appendix Figure 19
DOI: 10.5061/dryad.14d7b/1
title: Combined plastid sequences Sanctambrosia et al nexus

description: File with three plastid DNA sequence alignments in Nexus format
DOI: 10.5061/dryad.14nr4/1
title: SupInfoMetaDataCoinfection_data

description: Metadata for Coinfection script
DOI: 10.5061/dryad.1m1hg/1
title: Localities

description: The localities as a kmz file.
DOI: 10.5061/dryad.1m1hg/2
title: Scripts for Lissotriton montandoni

description: The scripts used for Lissotriton montandoni.
DOI: 10.5061/dryad.1m1hg/3
title: ABC analysis

description: Files associated with the ABC analysis.
DOI: 10.5061/dryad.217v8/1
title: Capture-resighting histories

description: Capture-resighting histories (headed format)
DOI: 10.5061/dryad.2h821/1
title: Frank et al. Yellowstone data

description: This file contains data used for modeling soil and plant processes at two grassland sites in Yellowstone National Park.  Treatments are as follow: "i", inside temporary exclosures; "o", outside temporary exclosures; "fo", inside fixed exclosures; "foo", outside fixed exclosures.
DOI: 10.5061/dryad.3gt37/1
title: JEB_Bryo_Data

description: Primary bryozoan growth dataset from Swezey et al. 2017.
DOI: 10.5061/dryad.454ss/1
title: find_s

description: A Matlab MEX function, written in C++, which finds the minimum number of competitive reversals required to change a given tournament to a hierarchy (s in Petraitis 1979).
DOI: 10.5061/dryad.454ss/2
title: find_M

description: A Matlab MEX function, written in C++, which, given n, provides a list of all n-species tournaments, gives the minimum number of reversals required to change them into their respective minimally distant hierarchies (s in Petraitis 1979), and also gives the maximum minimum number of reversals (M in Petraitis 1979).
DOI: 10.5061/dryad.4qn07/1
title: Sleeping with the enemy, Hricta and Hfemorata microsatellite, stridulation and location data

description: Microsatellite data from 8 loci (HR3, HR12, HR13A, HR15, HR34, HR35, Hma03, Hma04) amplified from samples of Hemideina ricta, Hemideina femorata and one known hybrid. Location data, mitochondrial haplotypes and location data are included where possible. -9 indicates missing microsatellite data.
DOI: 10.5061/dryad.5804c/1
title: BAWW Data Set

description: Data was collected in the field. BirdID is the unique identifier of each black-and-white warbler that was sampled during the study. The study was conducted over 4 years (y1=2008, y2=2009, y3=2010, y4=2011). A bird's breeding destination (North=boreal forest of Canada, South=southeastern U.S.) is  based on stable hydrogen isotope values of a bird's tail feather. The timing of migration (Early, Mid, Late) for each individual is based on the range of capture dates for each sex in a given breeding destination and in a given year. Blood plasma metabolite concentrations of triglycerides (TRIG) and β-hydroxy-butyrate (BOH) were collected via brachial vein puncture.  A Principal Component Analysis was conducted on plasma metabolite levels and the 1st principal component axis (PC1) was used as a measure of refueling with positive values representing increasing TRIG levels and decreasing BOH levels. The time between blood sampling and sunrise (Day.Time) and capture time (Bleed.Time) were recorded to determine their influence on blood plasma metabolite values.  Only a subset of birds captured had TRIG and BOH measurements and therefore some fields indicate NA because plasma metabolite data was not included in analyses. Stopover duration estimates (Stopover) were calculated with program MARK.  Condition is a size-specific condition index value. Age and sex of the warbler are also included.
DOI: 10.5061/dryad.7b86c/1
title: Reference data for Orobanchaceae

description: A compressed file (in zip-format) including single copy genes (cds- and fa-format) of Erythranthe guttata (syn. Mimulus gutattus) and, unless too similar, of Solanum lycopersicum used as reference data for identifying suitable loci in Orobanchaceae and for generating bait sequences for target-capture.
DOI: 10.5061/dryad.7d1sn/1
title: Phillips et al. 2017, J Biogeogr; 251 alignments of nuclear loci

description: This compressed file includes FASTA formatted alignments is for  251 nuclear loci collected through anchored-hybrid enrichment (AHE) for a phylogeographic study of Grotto Salamanders (Eurycea spelaea complex; Phillips et al. J. Biogeogr 2017). The genomic fragments were mapped to AHE baits (probes) designed from a related species, Eurycea tynerensis. Also included is a key which identifies which gene is alignments is from.
DOI: 10.5061/dryad.7dd43/2
title: MaleSummary

description: This file is an abstraction from the larger file Males&Females.xlsx, summarizing for each male. Behaviour is not recorded here as it relates to the particular pair.
DOI: 10.5061/dryad.85325/1
title: raw_data

description: The data file consists of the data for egg survival, hatchling survival, head capsule width, pupation/eclosion rate and adult heat survival with body mass.
DOI: 10.5061/dryad.8b69r/1
title: The SNP data for population genetic analysis
DOI: 10.5061/dryad.8b69r/2
title: The sequence data for phylogenetic reconstruction and genetic analysis
DOI: 10.5061/dryad.8b69r/3
title: Flower trait dataset for Qst analysis
DOI: 10.5061/dryad.c32hr/2
title: Dismal Lake Data

description: This file contains the meta data (site location, elevation, and radiocarbon dates), pollen (percentages and raw counts), macrofossils (identified and abundance), and charcoal counts from a sediment core taken from Dismal Lake, Idaho.
DOI: 10.5061/dryad.c32hr/3
title: Horseshoe Lake Data

description: This file contains the meta data (site location, elevation, and radiocarbon dates), pollen (percentages and raw counts), macrofossils (identified and abundance), and charcoal counts from a sediment core taken from Horseshoe Lake, Idaho.
DOI: 10.5061/dryad.c32hr/4
title: Rocky Ridge Lake Data

description: This file contains the meta data (site location, elevation, and radiocarbon dates), pollen (percentages and raw counts), macrofossils (identified and abundance), and charcoal counts from a sediment core taken from Rocky Ridge Lake, Idaho.
DOI: 10.5061/dryad.c32hr/5
title: Tsuga mertensiana distribution

description: Shape file used for construction of the distribution map of Tsuga mertensiana Figure 1. The Tsuga mertensiana distribution was developed by merging an ecoregion classification in British Columbia with a 6-km buffer around 7480 georeferenced observations (Tsuga mertensiana Locations Data Sheet.csv).
DOI: 10.5061/dryad.dc04s/1
title: Eschrichtius robustus genome annotation

description: Gray whale (Eschrichtius robustus) genome annotation in gff format. MAKER 2.28b was used to annotate the genome assembly. Scaffolds with a minimum size of 1000bp from the genome assembly were used to produce the final annotation. Assembly and annotation were conducted on individual ER-14-168.
DOI: 10.5061/dryad.dc04s/2
title: Eschrichtius robustus annotated proteins

description: Gray whale (Eschrichtius robustus) annotated proteins from MAKER 2.28b in fasta format. Assembly and annotation were conducted on individual ER-14-168.
DOI: 10.5061/dryad.dc04s/3
title: Eschrichtius robustus annotated transcripts

description: Gray whale (Eschrichtius robustus) annotated transcripts from MAKER 2.28b in fasta format. Assembly and annotation were conducted on individual ER-14-168.
DOI: 10.5061/dryad.dn5tk/1
title: DA_Social_Paper

description: Raw social space data in cm, dSO performance index and locomotion (numbers of lines crossed in 1 min. All details of how the data were obtained can be found in the material and methods of the paper.
DOI: 10.5061/dryad.f3sm9/2
title: batch_1_miss25RepAcousHistSexRem_7jun2016.recode

description: VCF file containing the genotypes for the baseline samples INCLUDING potential migrants (total N = 318 individuals; see table 1 and manuscript for details of which sites were considered baseline and how the migrants were identified) at 6136 SNP markers retained after quality filters described in the manuscript.
DOI: 10.5061/dryad.f3sm9/3
title: Data_6136filteredSNPs_allIndividuals

description: VCF file containing genotype data at all 6136 SNP markers retained after quality filters and for all individuals retained for analyses (i.e. excluding individuals with more than 25% missing data; total N = 391).
DOI: 10.5061/dryad.fn4nf/1
title: Grizzly Bear Generalized Spatial Mark-Resight Scripts and Data
DOI: 10.5061/dryad.fp0b8.2
title: Data from: Towards understanding the genetic basis of mouth asymmetry in the scale-eating cichlid Perissodus microlepis
DOI: 10.5061/dryad.fp0b8.2/2.2
title: ddRAD_SNP_morph.vcf

description: SNP data used for ddRAD analyses of differentiation between morphs; raw Illumina sequences archived to the NCBI Accession no. PRJNA324541; vcf file created using Stacks v. 1.29
DOI: 10.5061/dryad.fp0b8.2/3.2
title: Poolseq_SNP_morph.vcf

description: SNP data used for PoolSeq analyses of differentiation between morphs; raw Illumina sequences archived to the NCBI Accession no. PRJNA324541; vcf file created using Popoolation v. 1.2.2, Popoolation2 v. 1.2.01, samtools v. 1.3.1, bcftools v. 1.3.1, htslib v. 1.3.1
DOI: 10.5061/dryad.fp0b8.2/4.2
title: ddRAD_SNP_geo.vcf

description: SNP data used for ddRAD analyses of differentiation between sampling sites; raw Illumina sequences archived to the NCBI Accession no. PRJNA324541; vcf file created using Stacks v. 1.29