cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8205153
title: CMB heat flux PCA results

description: Results of the principal component analysis of the CMB heat flux for the five cases discussed in the publication "On the impact of True Polar Wander on heat flux patterns at the core-mantle boundary". For each case, the PCA results include for different files: - avg_pattern: Spherical harmonic decomposition of the CMB heat flux average pattern - patterns: Spherical harmonic decomposition of the PCA components patterns - sing_val: Singular value of the PCA components - weights: Time dependent weights of the PCA components
DOI: 10.5281/zenodo.10868366
title: REACH_OpenCall_ Applicants_Open_Database

description: This anonymised database covers Open Calls 1, 2 and 3 of REACH Incubator.
DOI: 10.5281/zenodo.7193719
title: REACH_OpenCall_ Applicants_Open_Database

description: This anonymised database covers Open Calls 1, 2 and 3 of REACH Incubator.
DOI: 10.5281/zenodo.7193720
title: REACH_OpenCall_ Applicants_Open_Database

description: This anonymised database covers Open Calls 1 and 2 of REACH Incubator. Data from Open Call 3 will be uploaded to Zenodo at the next reporting period.
DOI: 10.6084/m9.figshare.25457926.v2
title: Ilustrações da revisão de escopo.docx

description: <b>Objetivo: </b>Investigar os fatores de risco associados a quedas em idosos institucionalizados. <b>Método:</b> O estudo foi conduzido em duas etapas distintas. Primeiramente, realizou-se uma revisão de escopo da literatura, seguindo os critérios do PRISMA-ScR e registrada no Open Science Framework - OSF. Na segunda etapa, procedeu-se à busca nas seguintes bases de dados: PubMed, EMBASE, Web of Science, Scopus e Lilacs, sem limite de tempo de publicação, nos idiomas em Inglês, Português e Espanhol. A triagem dos estudos e extração dos dados foi realizada utilizando o programa Rayyan QCRI. <b>Resultados:</b> Após a aplicação dos critérios de inclusão obteve-se 69 artigos. Observou-se que os medicamentos utilizados são um fator de risco significativo para quedas, com os antidepressivos sendo a classe mais frequente, presentes em 30,4% (n=21) dos estudos, seguidos pelos antipsicóticos com 24,6% (n=17) e benzodiazepínicos com 20,3% (n=14). Entre os medicamentos mais prevalentes, destacam-se a Trazodona e a Risperidona, mencionadas em 4,4% (n=3) dos estudos cada. Quanto aos instrumentos para avaliação do risco de quedas, o Teste TUG foi o mais utilizado, representando 14,5% (n=10) dos estudos. <b>Conclusão: </b>A análise dos estudos revela uma associação significativa entre o uso de medicamentos, principalmente antidepressivos, antipsicóticos e benzodiazepínicos, e o aumento do risco de quedas. Destaca-se a risperidona e a trazodona como os principais medicamentos correlacionados a esse aumento de risco. Quanto aos instrumentos de avaliação do risco de quedas, o teste de TUG foi amplamente citado na literatura revisada.
DOI: 10.5281/zenodo.10843683
title: Canopy height map of China in the year 2021
DOI: 10.5281/zenodo.10843684
title: Canopy height map of China in the year 2021
DOI: 10.6084/m9.figshare.25470298
title: 2024 - Research Crowdfunding - addendum

description: The spreadsheet provides information on crowdfunding projects involving Australian university staff after August 2015. Data up to 2025 is recorded in a separate spreadsheet in this series. This spreadsheet may be updated from time to time. It provides data on crowdfunding campaigns that I find interesting. It is not seeking to provide comprehensive data.
DOI: 10.6084/m9.figshare.25470298.v1
title: 2024 - Research Crowdfunding - addendum

description: The spreadsheet provides information on crowdfunding projects involving Australian university staff after August 2015. Data up to 2025 is recorded in a separate spreadsheet in this series. This spreadsheet may be updated from time to time. It provides data on crowdfunding campaigns that I find interesting. It is not seeking to provide comprehensive data.
DOI: 10.6084/m9.figshare.25470355
title: Supplementary Material for: Translating the timing of developmental benchmarks in short-tailed opossums (Monodelphis domestica) to facilitate comparisons with commonly used rodent models

description: Introduction: The gray short-tailed opossum, Monodelhis domestica (M. domestica) is a widely used marsupial model species that presents unique advantages for neurodevelopmental studies. Notably their extremely altricial birth allows manipulation of postnatal pups at timepoints equivalent to embryonic stages of placental mammals. A robust literature exists on the development of short-tailed opossums, but many researchers working in the more conventional model species of mice and rats may find it daunting to identify the appropriate age at which to conduct experiments. Methods: Here we present detailed staging diagrams taken from photographic observations of 40 individual pups, in 6 litters, over 25 time points across postnatal development. We also present a comparative neurodevelopmental timeline of short-tailed opossums, the house mouse (Mus musculus), and the laboratory rat (Rattus norvegicus) during embryonic as well as postnatal development, using time points taken from this study and a review of existing literature, and use this dataset to present statistical models comparing the opossum to the rat and mouse. Results: One aim of this research is to aid in testing the generalizability of results found in rodents to other mammalian brains, such as the more distantly related metatherians. However, this broad dataset also allows the identification of potential heterochronies in opossum development compared to rats and mice. In contrast to previous work, we found broad similarity between the pace of opossum neural development with that of rats and mice. We also found that development of some systems was accelerated in the opossum, such as the forelimb motor plant, oral motor control, and some aspects of the olfactory system, while the development of the cortex, some aspects of the retina, and other aspects of the olfactory system are delayed compared to the rat and mouse. Discussion: The pace of opossum development is broadly similar to that of mice and rats, which underscores the usefulness of this species as a compliment to the more commonly used rodents. Many features that differ the most between opossums and rats and mice were either clustered around the day of birth and were features that have functional importance for the pup immediately after or during birth, or were features that have reduced functional importance for the pup until later in postnatal development, given that it is initially attached to the mother.
DOI: 10.5281/zenodo.10868375
title: Oktoberfest timsTOF Input

description: Example input data for Oktoberfest https://github.com/wilhelm-lab/oktoberfest
DOI: 10.5281/zenodo.10868376
title: Oktoberfest timsTOF Input

description: Example input data for Oktoberfest https://github.com/wilhelm-lab/oktoberfest
DOI: 10.4121/9011d7d2-b715-4aee-86c0-a67ca2810f2b.v2
title: MATLAB code for Modelling form roughness induced by tidal sand waves: second order perturbation approach analysis

description: This dataset contains the codes needed to compute the basic and second order flow obtained from a second order perturbation approach performed on a bed covered with tidal sand waves. The model setting is morphostatic and 2DV. The model is forced with an oscillatory flow, representative of the tidal flow.The flow is obtained by solving the dimensionless momentum and mass balance equations in Fourier space.
DOI: 10.4121/a3ecbf66-624a-4dde-ae50-de951bc2a069
title: Monte Carlo Simulation Code to Perform Simulations in the combined Reaction and Gibbs Ensemble

description: This code can be used to perform Monte Carlo (MC) simulations in the combined Reaction and Gibbs Ensemble. In these simulations, only Lennard-Jones interactions are considered. The directory "Source" contains the source code of the software written in Python. This code can be compiled using gfortran or Intel fortran compilers. The directory "Run" contains three example simulations. The subdirectories 'run_N2O4', 'run_NO2', and 'run_react' can be used to simulate phase and chemical equilibrium of pure N2O4 (at T=260K), pure NO2 (at T=240K) and the reactive mixture of NO2 and N2O4 (at T=270K). In the input files, the keywords represent:Ncycle: total number of MC cyclesNinit: number of initialization cyclesLinit: A logical that determines if the simulations start from a randomly generated configuration (.true.) or a configuration from a previous simulation (.false.). If started with a configuration from a previous simulation, a file called 'Coordold' needs to be present in the same directory (you can use the file 'Coordnew' generated at the end of each simulation).Temp: TemperaturePdisp: probability of choosing displacement trial movePswap: probability of choosing swap trial movePvol: probability of choosing volume trial movePreact: probability of choosing reaction trial moveDeltax: Maximum displacementDeltav: Maximum volume changeLnpt: If the simulation is conducted in NPT ensemble (.true.) or NVT ensemble (.false.). If NPT ensemble is chosen, the software only simulates one simulation box in NPT ensemble.Press: Pressure for NPT ensemble simulationsBox(1) and Box(2): Box sizes for the simulation boxes 1 and 2.Ncomp: Number of componentsNumber of Molecs for Each Box: The lines after this line shows the number of molecules for each component in each box. If two simulation boxes are simulated, there must be two lines, each showing the number of molecules of each component.Epsilon Sigma ln[Q] for each component: Three lines after this one show epsilon, sigma, and the natural logarithm of isolated molecule partition function for each component.Nreact: Number of reactions. Stoichiometry of each reactions should be given after this line.For more details, please refer to "Scaling Towards the Critical Point in the Combined Reaction/Gibbs Ensemble" from H. Mert Polat, Silvia Lasala, Frederick de Meyer, Celine Houriez, Othonas A. Moultos, and Thijs J. H. Vlugt.
DOI: 10.4121/a3ecbf66-624a-4dde-ae50-de951bc2a069.v2
title: Monte Carlo Simulation Code to Perform Simulations in the combined Reaction and Gibbs Ensemble

description: This code can be used to perform Monte Carlo (MC) simulations in the combined Reaction and Gibbs Ensemble. In these simulations, only Lennard-Jones interactions are considered. The directory "Source" contains the source code of the software written in Python. This code can be compiled using gfortran or Intel fortran compilers. The directory "Run" contains three example simulations. The subdirectories 'run_N2O4', 'run_NO2', and 'run_react' can be used to simulate phase and chemical equilibrium of pure N2O4 (at T=260K), pure NO2 (at T=240K) and the reactive mixture of NO2 and N2O4 (at T=270K). In the input files, the keywords represent:Ncycle: total number of MC cyclesNinit: number of initialization cyclesLinit: A logical that determines if the simulations start from a randomly generated configuration (.true.) or a configuration from a previous simulation (.false.). If started with a configuration from a previous simulation, a file called 'Coordold' needs to be present in the same directory (you can use the file 'Coordnew' generated at the end of each simulation).Temp: TemperaturePdisp: probability of choosing displacement trial movePswap: probability of choosing swap trial movePvol: probability of choosing volume trial movePreact: probability of choosing reaction trial moveDeltax: Maximum displacementDeltav: Maximum volume changeLnpt: If the simulation is conducted in NPT ensemble (.true.) or NVT ensemble (.false.). If NPT ensemble is chosen, the software only simulates one simulation box in NPT ensemble.Press: Pressure for NPT ensemble simulationsBox(1) and Box(2): Box sizes for the simulation boxes 1 and 2.Ncomp: Number of componentsNumber of Molecs for Each Box: The lines after this line shows the number of molecules for each component in each box. If two simulation boxes are simulated, there must be two lines, each showing the number of molecules of each component.Epsilon Sigma ln[Q] for each component: Three lines after this one show epsilon, sigma, and the natural logarithm of isolated molecule partition function for each component.Nreact: Number of reactions. Stoichiometry of each reactions should be given after this line.For more details, please refer to "Scaling Towards the Critical Point in the Combined Reaction/Gibbs Ensemble" from H. Mert Polat, Silvia Lasala, Frederick de Meyer, Celine Houriez, Othonas A. Moultos, and Thijs J. H. Vlugt.
DOI: 10.6084/m9.figshare.25470379.v1
title: Supplementary Material for: Balloon aortic valvuloplasty with or without percutaneous coronary intervention in the TAVR era

description: Introduction
The role of balloon aortic valvuloplasty (BAV) amid the era of transcatheter aortic valve replacement (TAVR) remains a topic of debate. We sought to study the safety and feasibility of combined balloon aortic valvuloplasty and percutaneous coronary intervention (BAV-PCI). 
Methods
Between November 2009 and July 2020, all patients undergoing BAV were identified and divided into three groups: combined BAV-PCI (group A), BAV with significant unrevascularised CAD (group B) and BAV without significant CAD (group C). Procedural outcomes, 30-day and one-year mortality were compared.
Results
A total of 264 patients were studied (n = 84, 93 and 87 patients in group A, B and C, respectively). The STS score was 10.2 ±8, 13.3 ±19 and 8.1 ±7, p = 0.026, in group A, B and C, respectively. VARC-3 adjudicated complications were similar among groups (11%, 13% and 5%, respectively, p = 0.168, respectively). Thirty-day and one-year mortality were 9.8% (n =26) and 32% (n = 86) of the entire cohort. The differences among groups did not reach statistical significance. 
Using univariate Cox regression analysis, group B were at higher risk of dying compared to group A patients (HR 1.58, 95% CI 1.11 – 2.25, p = 0.010). With multivariate Cox regression analysis, the predictors of mortality were STS score, cardiogenic shock, and mode of presentation and lack of subsequent definitive valve intervention. 
Conclusion
In high-risk patients with aortic valve stenosis, combined BAV-PCI is safe and feasible with comparable outcomes to BAV with and without significant CAD.
DOI: 10.34740/kaggle/dsv/7937444
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.3886/e185423
title: Design Thinking Motivations, Survey

description: A growing number of universities are utilizing Design Thinking (DT) to help students develop the problem finding, problem framing, and problem solving skills necessary to address today’s complex real-world challenges. As an iterative, human-centered approach to problem solving, DT synthesizes what is desirable, equitable, technologically feasible, and sustainable. This dataset includes survey responses from 49 educators from various backgrounds, disciplines, and universities who have taught design thinking in higher education. <br>
description: Higher Education<br>.
DOI: 10.3886/e185423v1-147241
title: Design Thinking Motivations, Survey

description: A growing number of universities are utilizing
Design Thinking (DT) to help students develop the problem finding, problem
framing, and problem solving skills necessary to address today’s complex
real-world challenges. As an iterative, human-centered approach to problem
solving, DT synthesizes what is desirable, equitable, technologically feasible,
and sustainable. This dataset includes survey responses from 49 educators from various backgrounds, disciplines, and universities who have taught design thinking in higher education. <br>
description: Higher Education<br>.
DOI: 10.5281/zenodo.10868385
title: When does antimicrobial resistance increase bacterial fitness?  Effects of dosing, social interactions and frequency dependence on the benefits of AmpC β-lactamases in broth, biofilms and a gut infection model.

description: One of the longstanding puzzles of antimicrobial resistance is why the frequency of resistance persists at intermediate levels.  Theoretical explanations for the lack of fixation of resistance include cryptic costs of resistance or negative frequency-dependence but are seldom explored experimentally.  β-lactamases, which detoxify penicillin-related antibiotics, have well-characterized frequency-dependent dynamics driven by cheating and cooperation.  However, bacterial physiology determines whether β-lactamases are cooperative and we know little about the sociality or fitness of β-lactamase producers in infections.  Moreover, media-based experiments constrain how we measure fitness, and ignore important parameters such as infectivity and transmission among hosts.  Here, we investigated the fitness effects of broad-spectrum AmpC β-lactamases in Enterobacter cloacae in broth, biofilms and gut infections in a model insect.  We quantified frequency- and dose-dependent fitness using cefotaxime, a third-generation cephalosporin.  We predicted that infection dynamics would be similar to those observed in biofilms, with social protection extending over a wide dose range.  We found evidence for the sociality of β-lactamases in all contexts with negative frequency-dependent selection ensuring the persistence of wild-type bacteria although cooperation was less prevalent in biofilms, contrary to predictions.  While competitive fitness in gut infections and broth had similar dynamics, incorporating infectivity into measurements of fitness in infections significantly affected conclusions.  Resistant bacteria had reduced infectivity which limited the fitness benefits of resistance to infections challenged with low antibiotic doses and having low initial frequencies of resistance.  The fitness of resistant bacteria in more physiologically tolerant states (in biofilms, in infections) could be constrained by the presence of wild-type bacteria, high antibiotic doses and limited availability of β-lactamases.  One conclusion is that increased tolerance of β -lactams does not necessarily increase selection pressure for resistance.  Overall, both cryptic fitness costs and frequency-dependence curtailed the fitness benefits of resistance in this study.
DOI: 10.5281/zenodo.10868386
title: When does antimicrobial resistance increase bacterial fitness?  Effects of dosing, social interactions and frequency dependence on the benefits of AmpC β-lactamases in broth, biofilms and a gut infection model.

description: One of the longstanding puzzles of antimicrobial resistance is why the frequency of resistance persists at intermediate levels.  Theoretical explanations for the lack of fixation of resistance include cryptic costs of resistance or negative frequency-dependence but are seldom explored experimentally.  β-lactamases, which detoxify penicillin-related antibiotics, have well-characterized frequency-dependent dynamics driven by cheating and cooperation.  However, bacterial physiology determines whether β-lactamases are cooperative and we know little about the sociality or fitness of β-lactamase producers in infections.  Moreover, media-based experiments constrain how we measure fitness, and ignore important parameters such as infectivity and transmission among hosts.  Here, we investigated the fitness effects of broad-spectrum AmpC β-lactamases in Enterobacter cloacae in broth, biofilms and gut infections in a model insect.  We quantified frequency- and dose-dependent fitness using cefotaxime, a third-generation cephalosporin.  We predicted that infection dynamics would be similar to those observed in biofilms, with social protection extending over a wide dose range.  We found evidence for the sociality of β-lactamases in all contexts with negative frequency-dependent selection ensuring the persistence of wild-type bacteria although cooperation was less prevalent in biofilms, contrary to predictions.  While competitive fitness in gut infections and broth had similar dynamics, incorporating infectivity into measurements of fitness in infections significantly affected conclusions.  Resistant bacteria had reduced infectivity which limited the fitness benefits of resistance to infections challenged with low antibiotic doses and having low initial frequencies of resistance.  The fitness of resistant bacteria in more physiologically tolerant states (in biofilms, in infections) could be constrained by the presence of wild-type bacteria, high antibiotic doses and limited availability of β-lactamases.  One conclusion is that increased tolerance of β -lactams does not necessarily increase selection pressure for resistance.  Overall, both cryptic fitness costs and frequency-dependence curtailed the fitness benefits of resistance in this study.
DOI: 10.5281/zenodo.10853272
title: Insect herbivory in a South African savanna-forest mosaic: neglected but substantial
title: Insect herbivory in a South African savanna-forest mosaic: neglected but substantial

description: These are primary data for the study of insect herbivory conducted in the savanna-forest mosaic of HluHluwe Imfolozi Park in South Africa. The submission contains the following files: specifically, notes for scripts and data particularly used in this study.

1. Script 00_Configuration for R2. Script 01_types_of_herbivory represents Figure 3a and Figure S13. Script 02_subset7_speciesALLhabitats represents Figure 3b, Figure S4, S54. Script 03_leaf_size_explorations represents Figures S2 and S35. Script 04_Species_traits_analyses represents Table 16. Script 05_Savanna correlation7. Script 06_herbivory_savanna_PCA represent figure 4b

Data used:1. Data = Distribution_herbivory_class represented Figure_2b & TableS42. Data = Mean proportion of leaf area eaten by chewers and miners per individual plant species represent figure 2a3. Data = Data_Table S1_fire_mammal gradient4. Data =  Leaf sizes investigations  for all plant species5. Data = KTraits_20220625_PhylTrait.csv represents phylogenetic correlation signals in table 1 for correlation matrix (Pearson correlation).6. Data = 07_dataset_herbivory_fortraits.csv represents correlation table 1 or correlation matrix (Pearson correlation).7. Data = Environment_savanna_correlations_ExcelPlot.2024 represents Figure S6a & 6b
DOI: 10.5281/zenodo.10853273
title: Insect herbivory in a South African savanna-forest mosaic: neglected but substantial
title: Insect herbivory in a South African savanna-forest mosaic: neglected but substantial

description: These are primary data for the study of insect herbivory conducted in the savanna-forest mosaic of HluHluwe Imfolozi Park in South Africa. The submission contains the following files: specifically, notes for scripts and data particularly used in this study.

1. Script 00_Configuration for R2. Script 01_types_of_herbivory represents Figure 3a and Figure S13. Script 02_subset7_speciesALLhabitats represents Figure 3b, Figure S4, S54. Script 03_leaf_size_explorations represents Figures S2 and S35. Script 04_Species_traits_analyses represents Table 16. Script 05_Savanna correlation7. Script 06_herbivory_savanna_PCA represent figure 4b

Data used:1. Data = Distribution_herbivory_class represented Figure_2b & TableS42. Data = Mean proportion of leaf area eaten by chewers and miners per individual plant species represent figure 2a3. Data = Data_Table S1_fire_mammal gradient4. Data =  Leaf sizes investigations  for all plant species5. Data = KTraits_20220625_PhylTrait.csv represents phylogenetic correlation signals in table 1 for correlation matrix (Pearson correlation).6. Data = 07_dataset_herbivory_fortraits.csv represents correlation table 1 or correlation matrix (Pearson correlation).7. Data = Environment_savanna_correlations_ExcelPlot.2024 represents Figure S6a & 6b
DOI: 10.5522/04/25381450
title: Composition of Roman Glass from Basinghall Street, London

description: Excel spreadsheet giving EDXA for major and minor elements, ICP-AES of majors and selected minors, ICP-MS of traces, TIMS of Nd and Sr isotopes.
DOI: 10.5522/04/25381450.v1
title: Composition of Roman Glass from Basinghall Street, London

description: Excel spreadsheet giving EDXA for major and minor elements, ICP-AES of majors and selected minors, ICP-MS of traces, TIMS of Nd and Sr isotopes.