cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23574055
title: Fibroblasts at the curtain call: from ensemble to principal dancers in immunometabolism and inflammaging

description: Abstract Inflammation is a necessary step in response to injuries, being vital in restoring homeostasis and facilitating tissue healing. Among the cells that play a crucial role in inflammatory responses, stromal cells, including fibroblasts, have an undeniable significance in fine-tuning the magnitude of mediators that directly affect hyper-inflammatory responses and tissue destruction. Fibroblasts, the dominant cells in the gingival connective tissue, are a very heterogeneous population of cells, and more recently they have been receiving well deserved attention as central players and often the ‘principal dancers’ of many pathological processes ranging from inflammation and fibrosis to altered immunity and cancer. The goal of the current investigation is to dive into the exact role of the stromal fibroblast and the responsible mechanistic factors involved in both regulation and dysregulation of the inflammatory responses. This article reviews the most recent literature on how fibroblasts, in their different activation states or subtypes, play a crucial role in contributing to inflammatory outcomes. We will focus on recent findings on inflammatory diseases. We will also provide connections regarding the stromal-immune relationship, which supports the idea of fibroblast coming out from the ‘ensemble’ of cell types to the protagonist role in immunometabolism and inflammaging. Additionally, we discuss the current advances in variation of fibroblast nomenclature and division into clusters with their own suggested function and particularities in gene expression. Here, we provide a perspective for the periodontal implications, discussing the fibroblast role in the infection-driven and inflammatory mediated diseases such as periodontitis.
DOI: 10.6084/m9.figshare.23574055.v1
title: Fibroblasts at the curtain call: from ensemble to principal dancers in immunometabolism and inflammaging

description: Abstract Inflammation is a necessary step in response to injuries, being vital in restoring homeostasis and facilitating tissue healing. Among the cells that play a crucial role in inflammatory responses, stromal cells, including fibroblasts, have an undeniable significance in fine-tuning the magnitude of mediators that directly affect hyper-inflammatory responses and tissue destruction. Fibroblasts, the dominant cells in the gingival connective tissue, are a very heterogeneous population of cells, and more recently they have been receiving well deserved attention as central players and often the ‘principal dancers’ of many pathological processes ranging from inflammation and fibrosis to altered immunity and cancer. The goal of the current investigation is to dive into the exact role of the stromal fibroblast and the responsible mechanistic factors involved in both regulation and dysregulation of the inflammatory responses. This article reviews the most recent literature on how fibroblasts, in their different activation states or subtypes, play a crucial role in contributing to inflammatory outcomes. We will focus on recent findings on inflammatory diseases. We will also provide connections regarding the stromal-immune relationship, which supports the idea of fibroblast coming out from the ‘ensemble’ of cell types to the protagonist role in immunometabolism and inflammaging. Additionally, we discuss the current advances in variation of fibroblast nomenclature and division into clusters with their own suggested function and particularities in gene expression. Here, we provide a perspective for the periodontal implications, discussing the fibroblast role in the infection-driven and inflammatory mediated diseases such as periodontitis.
DOI: 10.6084/m9.figshare.23574056
title: Fitting Structure-Data Files (.SDF) Libraries to Progenesis QI Identification Searches

description: Progenesis QI (PQI) is a multiplatform bioinformatics tool that facilitates the identification workflow for metabolomics experiments. PQI uses fragmentation data provided by MassBank of North America (MoNA) libraries, among others, for metabolite annotation. However, PQI does not officially support MoNA libraries and other libraries based on structure-data files (.sdf). This paper describes the development and application of a software named MoNA to Progenesis QI Library Converter, allowing PQI and MoNA by correcting the fragmentation data of the library for Progenesis readability. We evaluated several public experimental datasets, including human plasma, plant extracts, cultured cells, bacteria, rat serum, and rat hippocampus. The results showed that it is mandatory to proceed with file conversion of each library to allow PQI to access fragmentation information from .msp (main spectra profile) files. This step is highly recommended to improve the identification level of the metabolites.
DOI: 10.6084/m9.figshare.23574056.v1
title: Fitting Structure-Data Files (.SDF) Libraries to Progenesis QI Identification Searches

description: Progenesis QI (PQI) is a multiplatform bioinformatics tool that facilitates the identification workflow for metabolomics experiments. PQI uses fragmentation data provided by MassBank of North America (MoNA) libraries, among others, for metabolite annotation. However, PQI does not officially support MoNA libraries and other libraries based on structure-data files (.sdf). This paper describes the development and application of a software named MoNA to Progenesis QI Library Converter, allowing PQI and MoNA by correcting the fragmentation data of the library for Progenesis readability. We evaluated several public experimental datasets, including human plasma, plant extracts, cultured cells, bacteria, rat serum, and rat hippocampus. The results showed that it is mandatory to proceed with file conversion of each library to allow PQI to access fragmentation information from .msp (main spectra profile) files. This step is highly recommended to improve the identification level of the metabolites.
DOI: 10.6084/m9.figshare.23574059
title: Biogenic Silver Nanoparticles Capped with Proteins: Timed Knowledge and Perspectives

description: Biogenic silver nanoparticles are synthesized through silver(I) reduction, which is promoted by biomolecules available in the biological world and mostly obtained from plant extracts, fungal bioproduction, and some bacteria. The exact mechanisms accounting for such oxidoreduction processes are not fully known. However, some studies have already mentioned oxidoreductases, cofactors (nicotinamide adenine dinucelotide hydrogen (NADH), dihydroflavine-adenine dinucleotid (FADH2)), and phenolic compounds, as the main reductive species engaged in the formation of silver(0) and silver nanoparticles (silver NPs) synthesis. Biosynthesis is a one-pot process that leads to stable silver NP colloids that, regarding their size, shape, and uniformity, can be successfully controlled; and show great stability when one takes into account their surface capping by some biomolecules that as well take part in their synthesis. Although great efforts have been made to feature capping biomolecules and their interactions with silver NP surfaces, knowledge of the quantity (exact number per cm2) and type of biomolecules that cap or surround silver NPs remains limited. The literature provides detailed information on protein capping, but it still shows gaps regarding many aspects of fine biophysical protein featuring. The reason why certain proteins prefer to interact with silver NP surface and form chemical bonds, whereas others rather have intermolecular interaction with the first layer of proteins remains unknown. Assessing capping proteins’ involvement in the bioactivity of biogenic silver NPs is another relevant research field. Certain proteins enhance bioactivity of silver NPs and lower toxicity; however, the way antimicrobial processes benefit from protein capping is yet to be discovered. Finally, biogenic silver NPs can be found both in the environment and in water; moreover, their additional activity and behavior must be known or, at least, hypothesized.
DOI: 10.6084/m9.figshare.23574059.v1
title: Biogenic Silver Nanoparticles Capped with Proteins: Timed Knowledge and Perspectives

description: Biogenic silver nanoparticles are synthesized through silver(I) reduction, which is promoted by biomolecules available in the biological world and mostly obtained from plant extracts, fungal bioproduction, and some bacteria. The exact mechanisms accounting for such oxidoreduction processes are not fully known. However, some studies have already mentioned oxidoreductases, cofactors (nicotinamide adenine dinucelotide hydrogen (NADH), dihydroflavine-adenine dinucleotid (FADH2)), and phenolic compounds, as the main reductive species engaged in the formation of silver(0) and silver nanoparticles (silver NPs) synthesis. Biosynthesis is a one-pot process that leads to stable silver NP colloids that, regarding their size, shape, and uniformity, can be successfully controlled; and show great stability when one takes into account their surface capping by some biomolecules that as well take part in their synthesis. Although great efforts have been made to feature capping biomolecules and their interactions with silver NP surfaces, knowledge of the quantity (exact number per cm2) and type of biomolecules that cap or surround silver NPs remains limited. The literature provides detailed information on protein capping, but it still shows gaps regarding many aspects of fine biophysical protein featuring. The reason why certain proteins prefer to interact with silver NP surface and form chemical bonds, whereas others rather have intermolecular interaction with the first layer of proteins remains unknown. Assessing capping proteins’ involvement in the bioactivity of biogenic silver NPs is another relevant research field. Certain proteins enhance bioactivity of silver NPs and lower toxicity; however, the way antimicrobial processes benefit from protein capping is yet to be discovered. Finally, biogenic silver NPs can be found both in the environment and in water; moreover, their additional activity and behavior must be known or, at least, hypothesized.
DOI: 10.6084/m9.figshare.23574061
title: The New Museum Ideia (Flower, 1893): thoughts on the form and function of natural history museums

description: ABSTRACT The term new museum idea is widely used in the historiography of natural history museums. However, there is no consensus regarding the ideas covered by the concept and, in some cases, there was a disconnection with its author and its origin. On the other hand, the new museum idea represents a synthesis on some topics of the reform that these institutions went through in the 19th century elaborated by one of its central thinkers. This study sought to elucidate the complexity of the term in its original formulation context, in the speech of the naturalist William Henry Flower (1831-1899) in the Museums Association’s meeting, in 1893. In doing so, we hope to advance in the more precise knowledge regarding the ideas of the period and its diverse actors. We also seek to shed light on the 19th century naturalists who resolved the challenges and took on the opportunities for museums, bequeathing us a new institutional model. Revisiting the 19th century, and its rich process of museological reflection, also inspires us to tackle on the new challenges of natural history museums in the 21st century, showing that some aspects that seemed guaranteed at the time, such as research and safeguarding of the collection, now deserve our special attention. The model of institution bequeathed to us underwent profound adaptations, serving an increasing number of citizens in the production of relevant knowledge, education, and communication.
DOI: 10.6084/m9.figshare.23574061.v1
title: The New Museum Ideia (Flower, 1893): thoughts on the form and function of natural history museums

description: ABSTRACT The term new museum idea is widely used in the historiography of natural history museums. However, there is no consensus regarding the ideas covered by the concept and, in some cases, there was a disconnection with its author and its origin. On the other hand, the new museum idea represents a synthesis on some topics of the reform that these institutions went through in the 19th century elaborated by one of its central thinkers. This study sought to elucidate the complexity of the term in its original formulation context, in the speech of the naturalist William Henry Flower (1831-1899) in the Museums Association’s meeting, in 1893. In doing so, we hope to advance in the more precise knowledge regarding the ideas of the period and its diverse actors. We also seek to shed light on the 19th century naturalists who resolved the challenges and took on the opportunities for museums, bequeathing us a new institutional model. Revisiting the 19th century, and its rich process of museological reflection, also inspires us to tackle on the new challenges of natural history museums in the 21st century, showing that some aspects that seemed guaranteed at the time, such as research and safeguarding of the collection, now deserve our special attention. The model of institution bequeathed to us underwent profound adaptations, serving an increasing number of citizens in the production of relevant knowledge, education, and communication.
DOI: 10.6084/m9.figshare.23573958
title: <strong>The Role of Problem-Based Learning Approach in Teaching and Learning Physics</strong>. <strong>A Systematic Literature Review</strong>

description: Analysis table of findings
DOI: 10.5517/ccdc.csd.cc2f48b6
title: CCDC 2238427: Experimental Crystal Structure Determination

description: Related Article: Dylan C. Leary, Yu Zhang, Jose G. Rodriguez, Novruz G. Akhmedov, Jeffrey L. Petersen, Brian S. Dolinar, Carsten Milsmann|2023|Organometallics|42|1220|doi:10.1021/acs.organomet.3c00058
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f48c7
title: CCDC 2238428: Experimental Crystal Structure Determination

description: Related Article: Dylan C. Leary, Yu Zhang, Jose G. Rodriguez, Novruz G. Akhmedov, Jeffrey L. Petersen, Brian S. Dolinar, Carsten Milsmann|2023|Organometallics|42|1220|doi:10.1021/acs.organomet.3c00058
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f48d8
title: CCDC 2238429: Experimental Crystal Structure Determination

description: Related Article: Dylan C. Leary, Yu Zhang, Jose G. Rodriguez, Novruz G. Akhmedov, Jeffrey L. Petersen, Brian S. Dolinar, Carsten Milsmann|2023|Organometallics|42|1220|doi:10.1021/acs.organomet.3c00058
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f48f9
title: CCDC 2238430: Experimental Crystal Structure Determination

description: Related Article: Dylan C. Leary, Yu Zhang, Jose G. Rodriguez, Novruz G. Akhmedov, Jeffrey L. Petersen, Brian S. Dolinar, Carsten Milsmann|2023|Organometallics|42|1220|doi:10.1021/acs.organomet.3c00058
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f48gb
title: CCDC 2238431: Experimental Crystal Structure Determination

description: Related Article: Dylan C. Leary, Yu Zhang, Jose G. Rodriguez, Novruz G. Akhmedov, Jeffrey L. Petersen, Brian S. Dolinar, Carsten Milsmann|2023|Organometallics|42|1220|doi:10.1021/acs.organomet.3c00058
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f48hc
title: CCDC 2238432: Experimental Crystal Structure Determination

description: Related Article: Dylan C. Leary, Yu Zhang, Jose G. Rodriguez, Novruz G. Akhmedov, Jeffrey L. Petersen, Brian S. Dolinar, Carsten Milsmann|2023|Organometallics|42|1220|doi:10.1021/acs.organomet.3c00058
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f48jd
title: CCDC 2238433: Experimental Crystal Structure Determination

description: Related Article: Dylan C. Leary, Yu Zhang, Jose G. Rodriguez, Novruz G. Akhmedov, Jeffrey L. Petersen, Brian S. Dolinar, Carsten Milsmann|2023|Organometallics|42|1220|doi:10.1021/acs.organomet.3c00058
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f48kf
title: CCDC 2238434: Experimental Crystal Structure Determination

description: Related Article: Dylan C. Leary, Yu Zhang, Jose G. Rodriguez, Novruz G. Akhmedov, Jeffrey L. Petersen, Brian S. Dolinar, Carsten Milsmann|2023|Organometallics|42|1220|doi:10.1021/acs.organomet.3c00058
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23574060
title: <em><strong>Acidic Enol Electrooxidation Coupled Hydrogen Production with Ampere-level Current Density</strong></em> -NCOMMS-23-14992-A-source data..xlsx

description: <em><strong>Acidic Enol Electrooxidation Coupled Hydrogen Production with Ampere-level Current Density</strong></em>
DOI: 10.6084/m9.figshare.23574060.v1
title: <em><strong>Acidic Enol Electrooxidation Coupled Hydrogen Production with Ampere-level Current Density</strong></em> -NCOMMS-23-14992-A-source data..xlsx

description: <em><strong>Acidic Enol Electrooxidation Coupled Hydrogen Production with Ampere-level Current Density</strong></em>
DOI: 10.5281/zenodo.8076284
title: R SCRIPT: INFLUENCE OF ENVIRONMENTAL FACTORS ON THE POWER PRODUCED BY PHOTOVOLTAIC PANELS ARTIFICIALLY WEATHERED

description: The files describe the r-script code and data base used in the article titled: "INFLUENCE OF ENVIRONMENTAL FACTORS ON THE POWER PRODUCED BY PHOTOVOLTAIC PANELS ARTIFICIALLY WEATHERED"
DOI: 10.5281/zenodo.8076285
title: R SCRIPT: INFLUENCE OF ENVIRONMENTAL FACTORS ON THE POWER PRODUCED BY PHOTOVOLTAIC PANELS ARTIFICIALLY WEATHERED

description: The files describe the r-script code and data base used in the article titled: "INFLUENCE OF ENVIRONMENTAL FACTORS ON THE POWER PRODUCED BY PHOTOVOLTAIC PANELS ARTIFICIALLY WEATHERED"
DOI: 10.34740/kaggle/dsv/6011262
title: AutoXGB
DOI: 10.6084/m9.figshare.21922827
title: Original data for calculating PCEC-EIs in 2010-2019

description: Provincial GDP, year-end population, industrial added value, forestry land areas, construction land areas, and agricultural land areas were derived from the <em>China Statistical Yearbook 2020.</em> Provincial R & D funding was obtained from the <em>2019 statistical bulletin of national science and technology investment. </em>The <em>China Energy Statistical Yearbook 2020 </em>provided data on provincial total energy consumption, coal-dominated energy consumption, gross electricity generation, and renewable electricity generation (including hydro, nuclear, wind, and solar). The provincial industrial and household energy consumption was calculated using the provincial energy balance sheet from the <em>China Energy Statistical Yearbook 2020</em> and the reference coefficients of various energy sources converted into standard coal provided by the Ministry of Industry and Information Technology.
DOI: 10.6084/m9.figshare.23564124
title: Supporting Data: Structural Characterization of the [CuOR]<sup>2+</sup> Core”

description: Supporting computational data from the following publication: <br> V. M. Krishnan, D. Y. Shopov, C. J. Bouchey, W. D. Bailey, R. Parveen, B. Vlaisavljevich, and W. B. Tolman “Structural Characterization of the [CuOR]2+ Core” <em>J. Am. Chem. Soc.</em> <strong>2021</strong>, 143, 9, 3295-3299.
DOI: 10.5519/qd.s898ogq1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.23574150.v1
title: Extended data

description: This project contains the following data • Case Performa Informed consent form in English Ethical Committee Approval letter
DOI: 10.21227/vng3-tf47
title: 30/62 Wind Turbines Offshore Wind Farm Electric Collector System Planning data sets

description: We propose a planning method for offshore wind farm electrical collector system (OWF-ECS) with double-sided ring topology meeting the “N-1” criterion on cable faults in the paper. This data set includes two OWF with 30/62 wind turbines, with candidate lines options to be chosen from/optimized.
DOI: 10.3886/icpsr01334.v1
title: Rising Natural Gas Prices and Real Economic Activity
title: Version 1

description: In the aftermath of the disruptions caused by hurricanes Katrina and Rita, natural gas prices rose to record-high levels. Because natural gas is an important energy source for the United States economy, there was widespread concern that these high prices might cause a significant slowing in the economy-especially among those manufacturing industries that heavily consume natural gas. The analysis presented in this article suggests that output is responsive to natural gas prices in some manufacturing sectors. Although perhaps significant, this result must be balances against the findings that, when the analysis is extended to the macroeconomy (real gross domestic product growth), increases in crude oil prices significantly predict real gross domestic product growth, but natural gas prices do not.
description: Datasets: 
 
 DS1: Dataset
description: (1) The files submitted are the data 0611kkd.xls and the program 0611kkp.prg. (2) These data are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the investigators if further information is desired.