cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21233/08tx-8451
title: Boulder Reservoir diatom dataset

description: Raw data for the Boulder Reservoir diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.bouwy2
title: Characterizing and utilizing oxygen-dependent promoters for efficient dynamic metabolic engineering

description: This collection contains DNA sequences of plasmids constructed for the research article "Characterizing and utilizing oxygen-dependent promoters for efficient dynamic metabolic engineering" published by Julian Wichmann, Gerrich Behrendt, Simon Boecker, and Steffen Klamt (klamt@mpi-magdeburg.mpg.de) as GenBank files.
DOI: 10.17617/3.vkrmls
title: Dynamic optical response of solids following 1-fs-scale photoinjection

description: The data related to the publication "Dynamic optical response of solids following 1-fs-scale photoinjection".
DOI: 10.17617/3.gfq9c3
title: Large-scale connectomics in mouse barrel cortex
DOI: 10.17617/3.hpbbc7
title: 3D-POP - An automated annotation approach to facilitate markerless 2D-3D tracking of freely moving birds with marker-based motion capture

description: The 3DPOP dataset is a large scale 2D to 3D posture, identity and trajectory dataset for freely moving pigeons. We use marker-based motion tracking to first track precise head and body position and orientation for multiple individuals, then propagated custom keypoints based on the relative positions of markers and keypoints.
DOI: 10.17617/3.cchcnr
title: Pulsed Electrolysis: Explained

description: All the data related to the publication can be found in the dataset including simulation data and experimental data. Each data file is named corresponding to the original figure from the journal publication. Additionally, the figures in the publication are also available as .tiff files.
description: Matlab, 2019b
DOI: 10.17617/3.dych7d
title: Data for "Genetic population structure of the Xiongnu Empire at imperial and local scales"

description: This collection includes the EIGENSTRAT format genotype data of 17 ancient individuals for the 1240K SNP panel. The individuals are newly analyzed in the study "Genetic population structure of the Xiongnu Empire at imperial and local scales" and are from two Xiongnu-period archaeological sites in Mongolia: TAK(Takhiltyn Khotgor) and SBB(Shombuuzyn Belchir).
DOI: 10.17617/3.y4nfbg
title: Detecting stellar activity cycles in p-mode travel times: proof of concept using disk-integrated solar observations
DOI: 10.17617/3.4jhomw
title: Simulation trajectories for "Acrylic Paints: An Atomistic View of the Polymer Structure and Effects of Environmental Pollutants"

description: In this study, we develop a computational model to focus on how VOCs and water in the environment interact with the acrylic polymers found in modern paints. This dataset contains molecular dynamics simulation trajectories of acrylic polymers (PMMA, PEA and PnBA) and copolymers ( P(MMA-co-EA) and P(MMA-co-nBA)) found in acrylic paints. The simulations are performed with Gromacs 2019.4 software. Polymers are modeled using the General Amber Force Field (GAFF). For the homopolymers, we have also simulations performed with modified Optimized Potentials for Liquid Simulations force field (OPLS) based on our earlier work. 
Different types of files are included: topology files (top, tpr), trajectory files (xtc), coordinate files (gro), energy files (edr). All files are categorized into sub folders depending on type of polymer (homopolymer or copolymer), system components (VOCs or water), force field (gaff or opls), cooling simulation (from 600 K to 100 K) or temperature (100,150,...,600K) for further equilibration. The trajectories proceed in the order eq.xtc, eq2.xtc, eq3.xtc, and so on.
description: Gromacs, 2019.4
DOI: 10.17617/3.rmcwhk
title: Segmentation, tracking and foci detection data
DOI: 10.17617/3.at47os
title: Data for "Microcantilever-integrated photonic circuits for broadband laser beam scanning"
DOI: 10.17617/3.bkli0c
title: Source Data for "Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo"
DOI: 10.17617/3.j7qur3
title: Construction and comparison of different vehicles for heterologous gene expression in Zymomonas mobilis

description: Additional acceptors and modules for the Zymo-Parts kit, mostly focused around an array of shuttle vectors with different replication systems.
DOI: 10.17617/3.totk6n
title: MS Data for Publication "Structures of an unusual 3-hydroxyacyl dehydratase (FabZ) from a ladderane-producing organism with an unexpected substrate preference"

description: MS Data for publication "Structures of an unusual 3-hydroxyacyl dehydratase (FabZ) from a ladderane-producing organism with an unexpected substrate preference"
DOI: 10.17617/3.dd3qx6
title: Protein NMR Data for "Chemoselective umpolung of thiols to episulfoniums for cysteine bioconjugation"

description: This entry includes all the protein NMR data used in the manuscript "Chemoselective umpolung of thiols to episulfoniums for cysteine bioconjugation" by Philipp Hartmann et al.. The data includes the raw and processed NMR data leading to the 1H, 13C and 15N chemical shift assignment for the Human Ubiquitin T12C “apo” and “tagged” with the azide linker. In addition, it contains the data used in the investigation of structural changes upon covalent binding of the azide tag at position C12, which involves the NOE cross-peak volume measurements and comparison in high-resolution 2D NOESY spectra (200ms) at 800 MHz.
description: topspin, 3.6
description: nmrfam-sparky, 1.470
description: nmrpipe, 11.0
DOI: 10.17617/3.nbiyqb
title: Downloadable Material for DINER (Depth-aware Image-based NEural Radiance fields) [CVPR23]

description: Downloadable Content for the official codebase of DINER (Depth-aware Image-based NEural Radiance fields) [CVPR23]
&lt;br&gt;
Contains dataset split files as well as pretrained model weights.
&lt;br&gt;
&lt;br&gt;
Paper: &lt;a href="https://arxiv.org/abs/2211.16630"&gt;https://arxiv.org/abs/2211.16630&lt;/a&gt;
&lt;br&gt;
Code: &lt;a href="https://github.com/malteprinzler/diner"&gt;https://github.com/malteprinzler/diner&lt;/a&gt;
&lt;br&gt;
&lt;br&gt;
DOI: 10.17617/3.exfqc2
title: Temperature calibration of elevated Mg/Ca in planktic Foraminifera shells from the hypersaline Gulf of Aqaba

description: Abstract from Levy et al., 2023 - Temperature calibration of elevated Mg/Ca in planktic Foraminifera shells from the hypersaline Gulf of Aqaba (G-Cubed):

The Mg/Ca of marine calcareous Planktic Foraminifera (PF) shells is commonly used for sea surface temperature reconstructions. However, compared to open marine environments, hypersaline (&gt;40) oligotrophic seas have been shown to accommodate PF with higher Mg/Ca and divergent temperature to Mg/Ca relationships. To investigate influencing factors of PF Mg uptake in hypersaline regions, we measured the Mg/Ca of two flux dominating PF species, Globigerinoides ruber albus and Turborotalita clarkei, derived from a monthly resolved time series of sediment traps in the Gulf of Aqaba (GOA), northern Red Sea, as well as corresponding temperature, salinity, and pH values. The PF exhibit elevated Mg/Ca which cannot be explained by post-deposition or interstitial sediment diagenetic processes. Globigerinoides ruber albus displays Mg/Ca trends that strongly follow seasonal mixed layer temperature changes. Conversely, T. clarkei Mg/Ca trends do not follow temperature, but rather show significant Mg/Ca enrichment following mixing of the surface water column. We present a framework for incorporating elevated Mg/Ca into global Mg/Ca-T calibrations for G. ruber albus and present a new Mg/Ca-T calibration suitable for hypersaline marine environments.

Here the supplementary code to produce the calibration models for Levy et al., 2023 can be accessed. It can be compiled using Wolfram Mathematica.
description: Mathematica, 11
DOI: 10.17617/3.qe3mft
title: Disynaptic inhibition shapes tuning of OFF motion detectors in Drosophila
DOI: 10.17617/3.jfrzhs
title: Data for: Wide-spread brain activation and reduced CSF flow during avian REM sleep
DOI: 10.17617/3.kqppxf
title: ANIMAL-SPOT enables animal-independent signal detection and classification using deep learning

description: Example data and installation files for ANIMAL-SPOT. README inside zip.
DOI: 10.5281/zenodo.15364165
title: Laboratory measurements of ferric chloride (FeCl3) under Venusian conditions

description: Data to reproduce all figures in the paper "Laboratory measurements of ferric chloride (FeCl3) under Venusian conditions", submitted to ACS Earth and Space Chemistry (May 2025)
DOI: 10.17617/3.6rixee
title: Track properties as observed from OSIRIS-Rosetta

description: OSIRIS was the scientific camera onboard the ESA mission Rosetta to comet 67P/Churyumov-Gerasimenko. Some of the images it took were dedicated to scanning the dusty coma rather than the nucleus directly. In this type of images, individual dust aggregates can be seen as bright tracks due to their relative velocity respect to the camera. This dataset includes the position and basic properties of these tracks as seen in some of the image sets obtained as explained before.
DOI: 10.17617/3.4thbhc
title: FACS run data from Loxodes magnus nuclei separation for genome sequencing

description: Run data from FACS purification of Loxodes magnus macro- and micronuclei for genome sequencing.

See README.md for details
description: BD FACSChorus, v1.1.18.0
DOI: 10.17617/3.iufx39
title: FACS run data from Loxodes striatus nuclei separation for genome sequencing

description: Run data from FACS purification of Loxodes striatus macro- and micronuclei for genome sequencing. See README.md for details
description: BD FACSChorus, v1.1.18.0
DOI: 10.17617/3.eg7i36
title: Source data for "Synthesis of a glycan hairpin"

description: experimental; simulation/modelling
DOI: 10.17617/3.y18rpv
title: FACS run data from Loxodes magnus nuclei separation for nucleosomal sequencing

description: Run data from FACS purification of Loxodes magnus macro- and micronuclei for nucleosomal sequencing. See README.md for details
description: BD FACSChorus, v1.1.18.0
DOI: 10.17617/3.xi0lp5
title: Data for Published Research Data by the Max Planck Society in the Year 2020

description: This dataset contains data and code to analyse the MPG Data Publications 2020. The code in the Jupyter Notebook gives the API call to MPG.PuRe. This can be used to obtain the bibliometric data for the analysis. The tables show the evaluated results on the basis of these generated prints from MPG.PuRe.&lt;br&gt;&lt;br&gt;

You can run the whole dataset via Mybinder: &lt;a href="https://mybinder.org/v2/dataverse/10.17617/3.XI0LP5" rel="nofollow" target="_blank"&gt;&lt;img src="https://mybinder.org/badge_logo.svg" class="img-responsive"&gt;&lt;/a&gt;
description: SPSS
description: Jupyter Notebook
DOI: 10.17617/3.vqzov7
title: Figure source data supporting "Coulomb-correlated electron number states in a transmission electron microscope beam"

description: Figure source data supporting the publication "Coulomb-correlated electron number states in a transmission electron microscope beam." 
All plots from the manuscript can be replotted using the data sets in the folder &lt;code&gt;data&lt;/code&gt; and the Jupyter Notebook &lt;code&gt; plot_script.ipynb&lt;/code&gt;.
You can use this data repository interactively - click on the icon to launch a Jupyter session with Binder. &lt;a href="https://mybinder.org/v2/dataverse/10.17617/3.VQZOV7/" rel="nofollow" target="_blank"&gt;&lt;img src="https://mybinder.org/badge_logo.svg" class="img-responsive"&gt;&lt;/a&gt;
DOI: 10.21233/tpyz-5923
title: Lac Suprin charcoal dataset

description: Raw data for the Lac Suprin charcoal dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.5nogw5
title: Data for "Bursts of white noise trigger song in domestic Canaries", Goto et al. (2023) J Orn

description: Data related to the publication: Goto et al. (2023) Bursts of white noise trigger song in domestic Canaries. Journal of Ornithology. MS JORN-D-22-00183R2
DOI: 10.17617/3.evdwit
title: Yarrpbox Measurement Data
DOI: 10.17617/3.h5gt8i
title: Experimental dynamic optogenetic control of the adenosine triphosphatase enzyme using knowledge-based and Gaussian process-supported models

description: Genetic elements created for "Experimental dynamic optogenetic control of the adenosine triphosphatase enzyme using knowledge-based and Gaussian process-supported models"
DOI: 10.17617/3.werjxn
title: Dataset and input files: Cavity Formation at Metal-Water Interfaces
DOI: 10.17617/3.5iomqm
title: Implantable Photonic Neural Probes with 3D-Printed Microfluidics and Applications to Uncaging

description: Supplemental data and raw images for Figure 5 and Figure 7.
DOI: 10.17617/3.tbb26j
title: Logistics of bone mineralization in the chick embryo studied by 3D cryo FIB-SEM imaging

description: Raw FIBSEM dataset used in the study of bone mineralization logistics in the chick embryo at EDD13.
DOI: 10.17617/3.dterkg
title: The NFDI4BIOIMAGE consortium

description: Presentation slides for the named presentation at the "NFDI@MPG" Workshop at Ringberg Castle on April 20th 2023.

Abstract:
The NFDI4BIOIMAGE consortium was approved for funding in November 2022 and starts in March 2023. Led by Heinrich-Heine University Düsseldorf it brings together researchers, data stewards, and research software engineers from various German Universities and Research Institutes. The Max Planck Institute for Evolutionary Biology has Participant status. NFDI4BIOIMAGE is focused on the development, dissemination, and implementation of standards for data management, annotation, and processing of microscopy and bioimage analysis data. In this contribution I will outline the concept and work plan of NFDI4BIOIMAGE and delineate opportunities for collaborations and networking with the Max Planck Society in general and with the Max Planck BioImaging Core Unit Network in particular.
DOI: 10.17617/3.omm0jp
title: Data of long-term experiment using a robot actuated by pneumatic muscles

description: This dataset offers a compilation of long-term dynamic motion data gathered over approximately 3.5 weeks from a newly designed 4-DoF tendon-driven robotic arm powered by pneumatic artificial muscles (PAMs). The data encompasses movements generated by random multisine signals of target pressures, as well as repeated fixed target pressure movements, facilitating the evaluation of system repeatability and performance. 

See: &lt;a href="https://intelligent-soft-robots.github.io/pam_documentation/D1_datasets.html"&gt;https://intelligent-soft-robots.github.io/pam_documentation/D1_datasets.html&lt;/a&gt;
description: pandas, 2.0.0
DOI: 10.17617/3.d9y0v3
title: Endosymbiosis allows Sitophilus oryzae to persist in dry conditions

description: Data on Sitophilus oryzae fitness (population growth) and chemical (cuticular hydrocarbons) after exposure to desiccation stress. Functional data relating to beetle body size, body water content, rate of cuticular water loss in symbiotic and aposymbiotic beetles.
DOI: 10.17617/3.8jletw
title: Data from: Saturating the eQTL map in Drosophila melanogaster: genome-wide patterns of cis and trans regulation of transcriptional variation in outbred populations

description: Supplementary tables and raw data from manuscript 'Saturating the eQTL map in Drosophila melanogaster: genome-wide patterns of cis and trans regulation of transcriptional variation in outbred populations'. Files: Supplementary tables S6AD (folder SupplementaryTables), files needed to replicate the eQTL mapping (folder GEMMA), raw gene count tables (folder GeneCountMatrices), and VCF files (folder VCF).
DOI: 10.17617/3.unyggc
title: Supplementary Data Remote Inspection of Adversary-Controlled Environments

description: This repository contains the supplementary data for the the publication "Remote Inspection of Adversary-Controlled Environments".
DOI: 10.17617/3.cnvrwd
title: SVzon

description: The study models the magnetic action of Jupiter's zonal winds and has been submitted to JGR planets (authors J.Wicht and U.R.C. Christensen, 2023). The field model JRM09 is used as a background field and my study the field changes and secular variation. Several different zonal winds models and two electrical conductivity models are used. The magnetic field changes induced by the winds are modelled by integrating in time with the Matlab package SVzon. The data provided here contain the Matlab package, a manual, and all required data and results for the JGR article.
description: Matlab, 9.8.0.1451342 (R2020a) Update 5
DOI: 10.17617/3.vtho81
title: Data for Biophysical Simulation Reveals the Mechanics of the Avian Lumbosacral Organ

description: Dataset contains CAD model of the LSO biophysical model. Publication link: https://arxiv.org/abs/2212.11485
DOI: 10.21233/ef4j-m530
title: LDDsite2104 water chemistry dataset

description: Raw data for the LDDsite2104 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.zhsgvs
title: R project and data for Naive domestic chicks show an innate avoidance of red foods and a preference for the shape of green frogs

description: R project and data for Naive domestic chicks show an innate avoidance of red foods and a preference for the shape of green frogs
DOI: 10.15468/dl.esue6u
title: Occurrence Download

description: A dataset containing 344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Morchella deliciosa Fr.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry POLYGON ((-20 20, -20 75, 45 75, 45 20, -20 20))"
 ]
}

 The dataset includes 344 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021478-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.dltt1l
title: Data for the manuscript entitled "The topological Hall effect in CeAlGe"

description: This dataset contains the experimental data used in the manuscript entitled "The topological Hall effect in CeAlGe". It is composed by magnetization, longitudinal and Hall resistivity curves as a function of temperature, magnetic field and/or external pressure.
DOI: 10.17617/3.huylpr
title: Genetic analysis of a phenotypic loss in the mechanosensory entrainment of a circalunar clock
DOI: 10.17617/3.vkefb6
title: Data for reproducing the training of eDICE model ("Getting Personal with Epigenetics: Towards Individual-specific Epigenomic Imputation with Machine Learning")

description: Data repository for the files needed to reproduce the results in the paper
"Getting Personal with Epigenetics: Towards Individual-specific Epigenomic Imputation with Machine Learning", Hawkins-Hooker et al.
DOI: 10.17617/3.keribb
title: Quantifying mating behaviour using accelerometry and machine learning: challenges and opportunities

description: These data and scripts accompany the paper "Quantifying mating behaviour using accelerometry and machine learning: challenges and opportunities" published in Animal Behaviour. The latest version of the code can be found on GitHub (https://github.com/rowanjh/behav-acc-ml).

Accelerometry and machine learning are powerful tools for gaining in-depth information about animal behaviour. However, such methods are rarely used to quantify behaviours that contribute to mating success, such as intrasexual competition, courtship and copulation. In part, this is probably due to the inherent challenges of classifying behaviours that can be brief and infrequent, and that are not necessarily exhibited by all individuals. In this study, we used triaxial accelerometry and machine-learning methods to quantify the mating behaviours of captive male ruffs, Calidris pugnax. The ruff is a polymorphic, lekking shorebird with highly skewed mating success. Mating behaviour in ruffs includes ritualized postures that can be distinguished during observations. Using this system as a case study, we (1) describe possible approaches to classifying mating behaviour; (2) compare the classification performance of three supervised machine-learning methods: random forests, hidden Markov models and neural networks; (3) highlight potential pitfalls that can cause overestimation of model performance; and (4) offer suggestions for avoiding these pitfalls. In our study, some models distinguished mating behaviours from nonmating behaviours with high precision and sensitivity (&gt;75%), but only when trained and tested on the same individuals within the same timeframe. Estimates of model performance were much poorer when models were tested on future data or data from different individuals. Nevertheless, even when tested on different individuals, the hidden Markov model provided a reasonably accurate estimate of which males invested more time in mating behaviour overall. Here, we provide an end-to-end workflow for classifying behaviour from accelerometry, including recommendations, considerations and code. Although posture-based mating behaviours in ruffs proved challenging to distinguish, the methods that we describe show promise for displays associated with distinctive, dynamic movements.
DOI: 10.17617/3.dzsean
title: Metagenome and metagenome-assembled genome predicted gene sequences and their annotations for "Carbohydrates and carbohydrate degradation gene abundance and transcription in Atlantic waters of the Arctic"

description: This dataset incorporates gene sequences predicted from PacBio HiFi metagenome reads and metagenome-assembled genomes (MAGs) along with their taxonomic and functional annotations. Eight PacBio HiFi metagenomes were generated from seawater samples collected in the Eastern Fram Strait for the study "Spatial heterogeneity in carbohydrates and their utilisation by microbial communities in the high North Atlantic". See the methods section of the manuscript for details on data processing. Here, we provide the predicted gene sequences from the PacBio HiFi reads and MAGs along with tables that outline the position of the gene on the original read/contig, length, direction of transcription and taxonomic and functional annotation results from numerous databases. The raw metagenome reads and MAGs are available at ENA PRJEB58071.
DOI: 10.17617/3.dxz7tl
title: TriFinger RL Datasets

description: Offline reinforcement learning datasets collected on real TriFinger robots and with a simulated version of the robot. Trajectories for two dexterous manipulation tasks were collected: Pushing a cube to a goal position on the ground and Lifting it to a goal position and orientation in the air. Several dataset types collected with policies of varying proficiency are available. Pose estimates for the cube are part of the observations. Versions of the datasets including images from three cameras are available as well.
The datasets can be loaded with the trifinger_rl_datasets Python package available at https://github.com/rr-learning/trifinger_rl_datasets