cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/vi7yrb/r6ibsj
title: StpsHKU10-03.gb

description: Annotated genome of Staphylococcus pseudintermedius HKU10-03 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/stgqig
title: SthJIM8232.gb

description: Annotated genome of Streptococcus thermophilus JIM 8232 with ICEs and IMEs annotation
DOI: 10.18739/a27w6765k
title: Reduction of iron and humic substances as a dominant respiratory process in arctic peat soils

description: Investigators from San Diego State University, Washington University, and Stanford University will collaborate to study the role of iron and humic substances as electron acceptors in anaerobic respiration in peat soils of drained thaw lake basins in the Arctic. The role of microbial physiology in carbon flux from Arctic soils has substantial implications of climate change, and the PIs will apply novel methods that promise new insights. The study will further our understanding of controls over and seasonal and spatial variability in of carbon fluxes from Arctic soils. The goals are to: (1) determine the specific mechanisms of exocellular electron transfer in Alaskan peat soils, and the microorganisms that mediate these processes, (2) quantify the importance of exocellular electron transfer to soil respiration in Arctic drained thaw lake basins, (3) determine the effects of polygon-induced microtopography on exocellular electron transfer, and (4) determine how age and complexity of soil humic materials along a soil age gradient affect rates of exo-electron transfer, and the conditions under which it occurs. Award number: OPP 0808604 Sponsor: San Diego State University Foundation, 5250 Campanile Drive, San Diego, CA 92182-2190 Award Program: Arctic Natural Sciences (ANS)
DOI: 10.15454/vi7yrb/23edja
title: Step12228.gb

description: Annotated genome of Staphylococcus epidermidis ATCC 12228 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/29i2br
title: SsuZYH33.gb

description: Annotated genome of Streptococcus suis 05ZYH33 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/d4qgya
title: Sparas15912.gb

description: Annotated genome of Streptococcus parasanguinis ATCC 15912 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/dnfbih
title: SdyRE378.gb

description: Annotated genome of Streptococcus dysgalactiae subsp. equisimilis RE378 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/embo0y
title: FprA2-165.gb

description: Annotated genome of Faecalibacterium prausnitzii A2-165 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/fsw5nt
title: SsalJF.gb

description: Annotated genome of Streptococcus salivarius JF with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/gxkynq
title: RhoA2-183.gb

description: Annotated genome of Roseburia hominis A2-183 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/ojk1bs
title: Sag201008.gb

description: Annotated genome of Streptococcus agalactiae GD201008-001 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/olb7il
title: SsuT15.gb

description: Annotated genome of Streptococcus suis T15 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/rjtxfe
title: Lca919.gb

description: Annotated genome of Lactobacillus paracasei LOCK919 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/wk3tjb
title: Lph3177T.gb

description: Annotated genome of Lachnoclostridium phocaeense Marseille-P3177 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/5amvma
title: Table 1.xlsx

description: Genomes and accession numbers of FirmiData dataset
DOI: 10.15454/vi7yrb/nf6nxt
title: LmoLCC2378.gb

description: Annotated genome of Listeria monocytogenes SLCC2378 with ICEs and IMEs annotation
DOI: 10.15454/vi7yrb/ref3z6
title: SanC1051.gb

description: Annotated genome of Streptococcus anginosus C1051 with ICEs and IMEs annotation
DOI: 10.18739/a2445hd1r
title: Collaborative Research: Visualization, analysis, and HPC modeling of subglacial hydrology from high-resolution 3D conduit scans acquired with a novel sensor

description: This project will examine the processes controlling the flow of water through and beneath an Arctic glacier. The hydraulic properties of glaciers are a major factor influencing the rate at which glaciers slide on the underlying rock. Understanding subglacial flow is critical to developing models that accurately predict how glaciers will behave in response to warming climate and how glaciers will contribute to sea level rise. For outreach and educational purposes, the project will develop a web-based, interactive fluid dynamics tutorial concerning subglacial conduits. A project web site will also be developed. The project will contribute to workforce development by supporting the training of a graduate student and by providing partial support for three early-career scientists. This study will perform three-dimensional computational fluid dynamics (CFD) large eddy simulations (LES) of turbulent flows in a subglacial conduit using realistic surfaces and mesh boundaries. The computations will be done using 3D high-performance computing. The conduit geometry and roughness will be based on a unique set of field measurements made on a Svalbard glacier using with a modified video-game controller at mm resolution. The result of this effort is a first-ever high resolution visualization of a real subglacial conduit and the first subglacial LES simulations with realistic geometry. Results will be compared with model output using the more standard Darcy-Weisbach or Manning formulations. The study will provide improved insights into hydrological processes in mountain glaciers and large ice sheets such as the Greenland Ice Sheet.
DOI: 10.57745/86skez
title: Fdu_A2-165.gb

description: Faecalibacterium duncaniae A2-165 strain JCM 31915 chromosome (NZ_CP048437) with ICE and IME annotated
DOI: 10.57745/9brsqb
title: Fpr_apc918.gb

description: Faecalibacterium prausnitzii strain APC918/95b chromosome with ICE and IME annotated (NZ_CP030777)
DOI: 10.57745/mgegdx
title: Flo_942.gb

description: Faecalibacterium longum strain 942/30-2 chromosome (NZ_CP026548) with ICE and IME annotated
DOI: 10.57745/noiakl
title: NC_015977-1.gb

description: :unav
DOI: 10.57745/qz8gcz
title: Rho_A2-183.gb

description: Version mise à jour en nov 2024 de Roseburia hominis A2-183
DOI: 10.57745/ta7sbm
title: Fdu_Indica.gb

description: Faecalibacterium duncaniae strain Indica chromosome (NZ_CP023819) with ICE and IME annotated
DOI: 10.18739/a20c4sk70
title: Eastern Lake water hourly time series Temperature, depth, dissolved oxygen, conductivity, water level (CALON)

description: These folders contain .csv files of lake water temperature time series collected during the period April to August. Data collected at the same locations using the same configuration will be found in the yearly files, where the year is defined as that year when the data were downloaded.
 At the first subfolder level, the lakes are differentiated by the Eastern and Western Transects; see accompanying jpg image (CALON_sites_overview.jpg) and list of Lake Float Locations. The instrumentation configuration is identical in most cases. Generally, a rope is attached to an anchor. The other end of the rope is attached to a float. An Onset computer U12-015 water temperature data logger is affixed to the rope 30 cm below the float. Another data logger (U20) is attached to the surface on an anchor resting flat on the lake bed. The U20 is a water level/water temperature logger, so records the change in the water depth over the period of record. The water level is calibrated and corrected using the barometric pressure record from the nearest terrestrial met station. This is done in the Onset Hoboware software. All sensor specifications are shown below. 
 In April, a 10" diameter hole is augured through the ice and the instrument string is lowered to the lake bottom with the buoy sitting on the surface of the ice. It should be noted that there is often some movement of the floats that get entrained by the moving ice slab in spring or by strong wave activity in summer.
 All loggers record hourly measurements on the hour using Alaska Standard Time (AST). In each data file, column headings are Time_AST, LakeDepth_m, TempBed_C (at corresponding lake depth), and TempSurface_C. Prior to deployment all loggers were tested in a chamber circulating ethylene glycol at temperatures of 0, 5, 10, 15, 20 degrees C and calibration coefficients were determined from these test for each sensor. After sensor downloads, data records were corrected using these calibration models. Pressure transducer water level loggers were calibrated in a similar manner and corrected accordingly.
 In a few cases, additional sensor strings were deployed at a different location in the same lake. This typically occurred when the lake was especially deep (&gt;4 m), and was designed to obtain measurements of the entire water column. In these cases, an Onset Computer U23 water temperature logger was used. These data are shown as additional columns in the .csv files.
 Finally, there are also some stand alone files for a few select lakes ("focus lakes") that report time series of water quality including dissolved oxygen and conductivity. Loggers were manufactured by Onset Computer; Hobo U24-001 for conductivity and U26-001 for the dissolved oxygen (see specs in readme). These loggers were attached to the base of the instrument string described below for a few lakes. Loggers are deployed in August, recovered the following August, serviced, and redeployed. Measurements are collected hourly.
DOI: 10.18739/a2vm42z1h
title: Collaborative Research: Toward a Circumarctic Lakes Observation Network (CALON)-- Multiscale observations of lacustrine systems

description: The scientific goals and methods that address the intellectual merits of the research are: (1) Expand on existing lake monitoring sites in northern Alaska by developing a network of regionally representative lakes along environmental gradients from which we will collect baseline data to assess current physical, chemical, and biological lake characteristics. This will allow the project scientists to make spatial and temporal comparisons to determine the impact of warmer temperatures, changing cloud cover and precipitation patterns, permafrost degradation, and direct human impacts on lakes; (2) Implement a multiscale (hierarchical) lake instrumentation scheme such that basic data is collected from 51 lakes, while a subset of lakes are more intensively instrumented; (3) Provide regional scaling and extrapolation of key metrics through calibration and validation of satellite imagery with ground measurements; and (4) Develop and implement standardized protocols to enable inter-site comparison and to prepare for expansion towards a pan-Arctic network. The education/outreach goals that address the broader impacts of the research outlined above are: (1) Incorporate indigenous observations of lake physical and biological characteristics and changes. Innovative interactive methods of sharing information will be developed and made available through native and local organizations. Scientific and technical training will be provided to Iñupiat students for monitoring lake and drinking water quality; (2) Develop a demonstration monitoring network based on the Delay Tolerant Network (DTN) architecture and link this network to research centers, indigenous communities, and other power- and connectivity-challenged environments; (3) Develop and refine data management, visualization, and archiving activities with ACADIS; and (4) Provide an introduction to Arctic science for several beginning investigators. Funding Source: Arctic Observing Network (AON), Arctic System Science Program (ARCSS) Sponsors: - University of Cincinnati Main Campus, University Hall, Suite 530, Cincinnati, OH 45221 - University of Nebraska-Lincoln, 312 N 14th Street, Lincoln, NE 68588 - University of Alaska Fairbanks Campus, West Ridge Research Bldg 008, Fairbanks, AK 99775 - Alaska Science Center, U.S. Geological Survey, 4210 University Ave., Anchorage, AK 99508
DOI: 10.18739/a2qv3c475
title: Moss-associated Nitrogen (N2) fixation rate measurements from Toolik Field Station, Anchorage, and Fairbanks in 2016 and 2017

description: During late June 2016, 10 sites were sampled near Fairbanks, Alaska and 4 sites sampled near Toolik Field Station, Alaska. The following year, in June 2017, an additional 10 sites were sampled in the Anchorage, Alaska area. Sites were selected for accessibility, lack of disturbance, and presence of moss. Each site was comprised of one 30 meters (m) transect and 6 subplots at 5 m intervals along the transect. Environmental variables of interest such as moisture, organic layer depth, active layer depth, pH, and tree density were measured for each site or subplot. Global positioning system points of location were used to extract altitude, mean annual temperature, and mean annual precipitation from Climate North America. Common and uncommon mosses were collected once in each subplot in which they appeared. Moss samples were cleaned and sorted into subsamples. One subsample was measured for 15Nitrogen (N2) natural abundance values. The other subsample was incubated in a closed syringe for 14 hours with 15N gas and then measured for the enriched 15N value. Paired samples were compared to calculate a rate of N fixation, in micrograms Nitrogen per gram dry moss per day. This dataset includes environmental data collected at each site/subplot as well as the d15N values and calculated N fixation rates associated with 35 distinct moss species across three geographic zones of Alaska, USA: Toolik Field Station, Fairbanks, and Anchorage.
DOI: 10.18739/a2m61bq74
title: Photogrammetric scans of aerial photographs of North American glaciers, 1969. Roll 3 tiffs

description: Introduction: 
 
 Between 1958 and 1999, Austin Post led the USGS collection of aerial imagery of North American glaciers. These images are primarily vertical stereo black and white images, although single oblique images, as well as color images have been collected. The glaciers of North America were the subjects, and the digital products made available here serve to document the changes that have occurred to the glaciers over the past 5 decades. The purpose of this project is to preserve the data contained within these film images in a digital format for future analysis of North American glacier change.
 
 File Layout: 
 
 
 1. 
 
 The first level contains an overall data set of image metadata from 1964 - 1997 (nagapData.csv) and an R script (searchData.R) with instructions on how to search and subset the data. fileLayout.pdf shows the file structure and folder contents visually. There are also three kml files with flight path information by decade. 
 
 2. 
 
 The second level is the year in which the pictures were taken. There are 32 years with images from 1964 – 1997. The majority of these folders are jpegs with notes provided by Austin Post. They also contain a year-specific csv (YYYY.csv) that contains image metadata for the entire year (date, roll numbers, location name, longitude, latitude, altitude, media, and comments). The overall data set (nagapData.csv) is the aggregate of each individual “YYYY.csv” file. 
 
 3. 
 
 The glacier photos are located at the third level (this level). The folders at this level are distinguished by camera roll number (1, 2, etc.), and image type (thumbnail, jpeg, or tif); some also contain fiducial and oblique image folders. This level primarily contains image files of aerial photos as either thumbnails, jpegs, or tifs. It also includes a csv with image metadata specific to each roll (date, roll numbers, location name, longitude, latitude, altitude, media, and comments), a text file (info.txt) with camera specifications unique to each image, and a text file (histo.txt or matchReport.txt) with color information and scanner specifications unique to each image.
DOI: 10.18739/a2gf0mx30
title: Photogrammetric scans of aerial photographs of North American glaciers, 1992

description: Introduction: 
 
 Between 1958 and 1999, Austin Post led the USGS collection of aerial imagery of North American glaciers. These images are primarily vertical stereo black and white images, although single oblique images, as well as color images have been collected. The glaciers of North America were the subjects, and the digital products made available here serve to document the changes that have occurred to the glaciers over the past 5 decades. The purpose of this project is to preserve the data contained within these film images in a digital format for future analysis of North American glacier change.
 
 File Layout: 
 
 
 1. 
 
 The first level contains an overall data set of image metadata from 1964 - 1997 (nagapData.csv) and an R script (searchData.R) with instructions on how to search and subset the data. fileLayout.pdf shows the file structure and folder contents visually. There are also three kml files with flight path information by decade. 
 
 2. 
 
 The second level (this level) is the year in which the pictures were taken. There are 32 years with images from 1964 – 1997. The majority of these folders are jpegs with notes provided by Austin Post. They also contain a year-specific csv (YYYY.csv) that contains image metadata for the entire year (date, roll numbers, location name, longitude, latitude, altitude, media, and comments). The overall data set (nagapData.csv) is the aggregate of each individual “YYYY.csv” file. 
 
 3. 
 
 The glacier photos are located at the third level. The folders at this level are distinguished by camera roll number (1, 2, etc.), and image type (thumbnail, jpeg, or tif); some also contain fiducial and oblique image folders. This level primarily contains image files of aerial photos as either thumbnails, jpegs, or tifs. It also includes a csv with image metadata specific to each roll (date, roll numbers, location name, longitude, latitude, altitude, media, and comments), a text file (info.txt) with camera specifications unique to each image, and a text file (histo.txt) with color information unique to each image.
DOI: 10.18739/a2bn9x393
title: Photogrammetric scans of aerial photographs of North American glaciers, 1993

description: Introduction: 
 
 Between 1958 and 1999, Austin Post led the USGS collection of aerial imagery of North American glaciers. These images are primarily vertical stereo black and white images, although single oblique images, as well as color images have been collected. The glaciers of North America were the subjects, and the digital products made available here serve to document the changes that have occurred to the glaciers over the past 5 decades. The purpose of this project is to preserve the data contained within these film images in a digital format for future analysis of North American glacier change.
 
 File Layout: 
 
 
 1. 
 
 The first level contains an overall data set of image metadata from 1964 - 1997 (nagapData.csv) and an R script (searchData.R) with instructions on how to search and subset the data. fileLayout.pdf shows the file structure and folder contents visually. There are also three kml files with flight path information by decade. 
 
 2. 
 
 The second level (this level) is the year in which the pictures were taken. There are 32 years with images from 1964 – 1997. The majority of these folders are jpegs with notes provided by Austin Post. They also contain a year-specific csv (YYYY.csv) that contains image metadata for the entire year (date, roll numbers, location name, longitude, latitude, altitude, media, and comments). The overall data set (nagapData.csv) is the aggregate of each individual “YYYY.csv” file. 
 
 3. 
 
 The glacier photos are located at the third level. The folders at this level are distinguished by camera roll number (1, 2, etc.), and image type (thumbnail, jpeg, or tif); some also contain fiducial and oblique image folders. This level primarily contains image files of aerial photos as either thumbnails, jpegs, or tifs. It also includes a csv with image metadata specific to each roll (date, roll numbers, location name, longitude, latitude, altitude, media, and comments), a text file (info.txt) with camera specifications unique to each image, and a text file (histo.txt) with color information unique to each image.
DOI: 10.18739/a2348gh1h
title: Photogrammetric scans of aerial photographs of North American glaciers, 1995

description: Introduction: 
 
 Between 1958 and 1999, Austin Post led the USGS collection of aerial imagery of North American glaciers. These images are primarily vertical stereo black and white images, although single oblique images, as well as color images have been collected. The glaciers of North America were the subjects, and the digital products made available here serve to document the changes that have occurred to the glaciers over the past 5 decades. The purpose of this project is to preserve the data contained within these film images in a digital format for future analysis of North American glacier change.
 
 File Layout: 
 
 
 1. 
 
 The first level contains an overall data set of image metadata from 1964 - 1997 (nagapData.csv) and an R script (searchData.R) with instructions on how to search and subset the data. fileLayout.pdf shows the file structure and folder contents visually. There are also three kml files with flight path information by decade. 
 
 2. 
 
 The second level (this level) is the year in which the pictures were taken. There are 32 years with images from 1964 – 1997. The majority of these folders are jpegs with notes provided by Austin Post. They also contain a year-specific csv (YYYY.csv) that contains image metadata for the entire year (date, roll numbers, location name, longitude, latitude, altitude, media, and comments). The overall data set (nagapData.csv) is the aggregate of each individual “YYYY.csv” file. 
 
 3. 
 
 The glacier photos are located at the third level. The folders at this level are distinguished by camera roll number (1, 2, etc.), and image type (thumbnail, jpeg, or tif); some also contain fiducial and oblique image folders. This level primarily contains image files of aerial photos as either thumbnails, jpegs, or tifs. It also includes a csv with image metadata specific to each roll (date, roll numbers, location name, longitude, latitude, altitude, media, and comments), a text file (info.txt) with camera specifications unique to each image, and a text file (histo.txt) with color information unique to each image.