cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20160632.v2
title: Example high-energy surface x-ray diffraction dataset for HAT software

description: This is a folder of detector images collected at the P07 beamline, DESY, in 2019. The images serve as an example dataset for the High-Energy surface x-ray diffraction toolkit (HAT). <br> See: https://github.com/gary-harlow/HESXRD-Analysis-Toolkit <br> A publication on the software has been submitted. <br> System: Au(111) electrode in 0.1 M NaOH at 0.1 V (vs RHE) Energy: 73.7 keV Sample Detector Distance: 1.6 m Center Pixel: (1003, 2030) Pixels: (2048,2048) <br> The images are compressed with 7zip, and take 23GB uncompressed. <br> Metadata is stored in .metadata files The dark image is dark.tif <br> The P07 2019 Preset on HAT will handle the metadata files and dark image subtraction automatically. <br>
DOI: 10.6084/m9.figshare.20160632.v1
title: Au(111) in NaOH High-energy surface x-ray diffraction dataset

description: This is a folder of detector images collected at the P07 beamline, DESY, in 2019. The images serve as an example dataset for the High-Energy surface x-ray diffraction toolkit (HAT). <br> See: https://github.com/gary-harlow/HESXRD-Analysis-Toolkit <br> A publication on the software has been submitted. <br> System: Au(111) electrode in 0.1 M NaOH at 0.1 V (vs RHE) Energy: 73.7 keV Sample Detector Distance: 1.6 m Center Pixel: (1003, 2030) Pixels: (2048,2048) <br> The images are compressed with 7zip, and take 23GB uncompressed. <br> Metadata is stored in .metadata files The dark image is dark.tif <br> The P07 2019 Preset on HAT will handle the metadata files and dark image subtraction automatically. <br>
DOI: 10.5281/zenodo.6761804
title: Informed consent

description: The informed consent for subjects in our experiment.
DOI: 10.5281/zenodo.6761803
title: Informed consent

description: The informed consent for subjects in our experiment.
DOI: 10.21227/7gm9-mt95
title: Phantom Premium 1.5A Haptic Device

description: This is a data set resulting from the collaboration of the user and Phantom Premium $1.5$A Haptic Device, Geomagic Inc. Five right-handed users performed the task of tracking squiggly line in 6 trials. Since there is a significant difference between the performance of the trials done by the dominant hand and with ones performed by the non-dominant hand, we consider trajectories of the dominant hand of the users as expert data and trajectories coming from the other hand as novice data. This assumption is due to the fact that our dominant hand is fully trained to skillfully perform elaborate motions with low hand tremor and high precision compared to the non-dominant hand. We are not arguing that the differences between the left and right hand exactly correspond to the differences between the skills level of novices and experts, we are trying to create two conditions that are different in the performance level to test our approach on.
DOI: 10.5281/zenodo.5795907
title: 1. A natural fusion between a flavodiiron protein, rubredoxin and NADH:rubredoxin oxidoreductase is responsible for the H2O-forming oxidase activity in Trichomonas vaginalis

description: Homology models fit to a 6.8Å cryo-EM map of <em>T. vaginalis</em> FDPF3.
DOI: 10.5281/zenodo.5795906
title: 1. A natural fusion between a flavodiiron protein, rubredoxin and NADH:rubredoxin oxidoreductase is responsible for the H2O-forming oxidase activity in Trichomonas vaginalis

description: Homology models fit to a 6.8Å cryo-EM map of <em>T. vaginalis</em> FDPF3.
DOI: 10.6084/m9.figshare.17209610.v1
title: lct_corpus.tar.gz

description: The Leaf Clinical Trials (LCT) corpus: an annotated corpus of clinical trials eligibility criteria.<br>
DOI: 10.6073/pasta/7cf27a60006e711a2bfcff526b09899f
title: Chamber measurements of carbon dioxide (CO2) and methane (CH4) in Everglades following Hurricane Irma: 2017 - 2019

description: On September 9, 2017, highwinds from Hurricane Irma impacted the Florida Everglades. With 24 hours of heavy rain along with strong winds and storm surge, the storm caused higher than normal water levels, wind-induced defoliation, uprooting of plants and soil disturbance in Everglades short-stature freshwater wetlands. The hurricane redistributed short-stature vegetation into dead mats in Everglades National Park. The high post-storm water levels saturated many of these dead mats, slowing decomposition and increasing their persistence on the landscape. In this study, we measure carbon dioxide (CO2) and methane (CH4) fluxes at dead mats and compared them to the ridge and slough of freshwater marsh and to the marl prairie.
DOI: 10.5517/ccdc.csd.cc26ykc3
title: CCDC 2054195: Experimental Crystal Structure Determination

description: Related Article: Hirokazu Miyoshi, Ryosuke Sugiura, Ryohei Kishi, Sarah N. Spisak, Zheng Wei, Atsuya Muranaka, Masanobu Uchiyama, Nagao Kobayashi, Shreyam Chatterjee, Yutaka Ie, Ichiro Hisaki, Marina A. Petrukhina, Tohru Nishinaga, Masayoshi Nakano, Yoshito Tobe|2022|Angew.Chem.,Int.Ed.|61|e202115316|doi:10.1002/anie.202115316
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26ykd4
title: CCDC 2054196: Experimental Crystal Structure Determination

description: Related Article: Hirokazu Miyoshi, Ryosuke Sugiura, Ryohei Kishi, Sarah N. Spisak, Zheng Wei, Atsuya Muranaka, Masanobu Uchiyama, Nagao Kobayashi, Shreyam Chatterjee, Yutaka Ie, Ichiro Hisaki, Marina A. Petrukhina, Tohru Nishinaga, Masayoshi Nakano, Yoshito Tobe|2022|Angew.Chem.,Int.Ed.|61|e202115316|doi:10.1002/anie.202115316
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc272b6w
title: CCDC 2057817: Experimental Crystal Structure Determination

description: Related Article: Ming-Hao Du, Su-Hui Xu, Guan-Jun Li, Han Xu, Yang Lin, Wei-Dong Liu, La-Sheng Long, Lan-Sun Zheng, Xiang-Jian Kong|2022|Angew.Chem.,Int.Ed.|61|e202116296|doi:10.1002/anie.202116296
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2733m3
title: CCDC 2058574: Experimental Crystal Structure Determination

description: Related Article: Viktor Bliksted Roug Pedersen,  Jeppe Granhøj,  Andreas Erbs Hillers‐Bendtsen,  Anders Kadziola,  Kurt V. Mikkelsen,  Mogens Brøndsted Nielsen|2021|Chem.-Eur.J.|27|8315|doi:10.1002/chem.202100984
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2733yf
title: CCDC 2058584: Experimental Crystal Structure Determination

description: Related Article: Viktor Bliksted Roug Pedersen,  Jeppe Granhøj,  Andreas Erbs Hillers‐Bendtsen,  Anders Kadziola,  Kurt V. Mikkelsen,  Mogens Brøndsted Nielsen|2021|Chem.-Eur.J.|27|8315|doi:10.1002/chem.202100984
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2733zg
title: CCDC 2058585: Experimental Crystal Structure Determination

description: Related Article: Viktor Bliksted Roug Pedersen,  Jeppe Granhøj,  Andreas Erbs Hillers‐Bendtsen,  Anders Kadziola,  Kurt V. Mikkelsen,  Mogens Brøndsted Nielsen|2021|Chem.-Eur.J.|27|8315|doi:10.1002/chem.202100984
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27344n
title: CCDC 2058590: Experimental Crystal Structure Determination

description: Related Article: Viktor Bliksted Roug Pedersen,  Jeppe Granhøj,  Andreas Erbs Hillers‐Bendtsen,  Anders Kadziola,  Kurt V. Mikkelsen,  Mogens Brøndsted Nielsen|2021|Chem.-Eur.J.|27|8315|doi:10.1002/chem.202100984
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc275y0d
title: CCDC 2061283: Experimental Crystal Structure Determination

description: Related Article: Hugo Hernández‐Toledo,  Hugo Torrens,  Marcos Flores‐Álamo,  Luisa De Cola,  Guillermo Moreno‐Alcántar|2021|Chem.-Eur.J.|27|8308|doi:10.1002/chem.202100865
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc277h77
title: CCDC 2062778: Experimental Crystal Structure Determination

description: Related Article: Andrew J. Peloquin,  Colin D. McMillen,  Scott T. Iacono,  William T. Pennington|2021|Chem.-Eur.J.|27|8398|doi:10.1002/chem.202100730
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc277h88
title: CCDC 2062779: Experimental Crystal Structure Determination

description: Related Article: Andrew J. Peloquin,  Colin D. McMillen,  Scott T. Iacono,  William T. Pennington|2021|Chem.-Eur.J.|27|8398|doi:10.1002/chem.202100730
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc277h99
title: CCDC 2062780: Experimental Crystal Structure Determination

description: Related Article: Andrew J. Peloquin,  Colin D. McMillen,  Scott T. Iacono,  William T. Pennington|2021|Chem.-Eur.J.|27|8398|doi:10.1002/chem.202100730
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc277hbb
title: CCDC 2062781: Experimental Crystal Structure Determination

description: Related Article: Andrew J. Peloquin,  Colin D. McMillen,  Scott T. Iacono,  William T. Pennington|2021|Chem.-Eur.J.|27|8398|doi:10.1002/chem.202100730
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc277hcc
title: CCDC 2062782: Experimental Crystal Structure Determination

description: Related Article: Andrew J. Peloquin,  Colin D. McMillen,  Scott T. Iacono,  William T. Pennington|2021|Chem.-Eur.J.|27|8398|doi:10.1002/chem.202100730
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc277hdd
title: CCDC 2062783: Experimental Crystal Structure Determination

description: Related Article: Andrew J. Peloquin,  Colin D. McMillen,  Scott T. Iacono,  William T. Pennington|2021|Chem.-Eur.J.|27|8398|doi:10.1002/chem.202100730
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc277hff
title: CCDC 2062784: Experimental Crystal Structure Determination

description: Related Article: Andrew J. Peloquin,  Colin D. McMillen,  Scott T. Iacono,  William T. Pennington|2021|Chem.-Eur.J.|27|8398|doi:10.1002/chem.202100730
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc277hgg
title: CCDC 2062785: Experimental Crystal Structure Determination

description: Related Article: Andrew J. Peloquin,  Colin D. McMillen,  Scott T. Iacono,  William T. Pennington|2021|Chem.-Eur.J.|27|8398|doi:10.1002/chem.202100730
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20161733
title: Manuscript submitted to WRR_Gao et al., 2022

description: The paper with this data is still in the submission stage.The data cannot be used by others unless the author agrees.
DOI: 10.6084/m9.figshare.20161733.v1
title: Manuscript submitted to WRR_Gao et al., 2020

description: The paper with this data is still in the submission stage.The data cannot be used by others unless the author agrees.
DOI: 10.6084/m9.figshare.13210627.v1
title: Shoulder magnetic resonance imaging findings in manual wheelchair users with spinal cord injury

description: <b>Objective:</b> To investigate the prevalence of rotator cuff and long head of the biceps pathologies in manual wheelchair (MWC) users with spinal cord injury (SCI). <b>Design:</b> Cross-sectional study. <b>Setting:</b> Outpatient clinic at a tertiary medical center. <b>Participants:</b> Forty-four adult MWC users with SCI (36 men and 8 women) with an average age (SD) of 42 (13) years. SCI levels ranged from C6 to L1; complete and incomplete SCI. <b>Outcome Measures:</b> Participants’ demographic and anthropometric information, presence of shoulder pain, Wheelchair User’s Pain Index (WUSPI) scores, and magnetic resonance imaging findings of shoulder pathologies including tendinopathy, tendon tears, and muscle atrophy. <b>Results:</b> Fifty-nine percent of the participants reported some shoulder pain. The prevalence of any tendinopathy across the rotator cuff and the long head of biceps tendon was 98%. The prevalence of tendinopathy in the supraspinatus was 86%, infraspinatus was 91%, subscapularis was 75%, and biceps was 57%. The majority of tendinopathies had mild or moderate severity. The prevalence of any tears was 68%<b>.</b> The prevalence of tendon tears in the supraspinatus was 48%, infraspinatus was 36%, subscapularis was 43%, and biceps was 12%. The majority of the tears were partial-thickness tears. Participants without tendon tears were significantly younger (P &lt; 0.001) and had been wheelchair user for a significantly shorter time (P = 0.005) than those with tendon tears. <b>Conclusion:</b> Mild and moderate shoulder tendinopathy and partial-thickness tendon tears were highly prevalent in MWC users with SCI. Additionally, the findings of this study suggest that strategies for monitoring shoulder pathologies in this population should not be overly reliant on patient-reported pain, but perhaps more concerned with years of wheelchair use and age.
DOI: 10.6084/m9.figshare.13003590
title: Factors influencing thigh muscle volume change with cycling exercises in acute spinal cord injury – a secondary analysis of a randomized controlled trial

description: <b>Objective:</b> To conduct a per-protocol analysis on thigh muscle volume outcomes from the Spinal Cord Injury and Physical Activity (SCIPA) Switch-On Trial. <b>Design:</b> Secondary analysis from an assessor-blind randomized, controlled trial. <b>Setting:</b> Four acute/sub-acute hospitals in Australia and New Zealand. <b>Participants:</b> 24 adults (1 female) within four weeks of motor complete or incomplete spinal cord injury (SCI) <b>Intervention:</b> Functional electrical stimulation–assisted cycling (FESC) or passive cycling (PC) 4x/week for 12 weeks. <b>Outcome Measures:</b> Whole thigh and muscle group volumes calculated from manually segmented MR images. <b>Results:</b> 19/24 participants completed ≥ twelve weeks of the intervention. Five participants experienced hypertrophy (4 FESC; 1 PC) and eight attenuation of atrophy (&lt;20% volume loss) (3 FESC; 5 PC) in thigh muscle volume. Six participants were non-responders, exhibiting atrophy &gt;20% (3 FESC; 3 PC). Mean (SD) change for FESC was −2.3% (25.3%) and PC was −14.0% (12.3%). After controlling for baseline muscle volumes, a strong significant correlation was found between mean weekly exercise frequency and quadriceps and hamstring volumes (r=6.25, P=0.006), regardless of mode. Average watts was highly correlated to quadriceps volumes only (r=5.92, P=0.01), while total number of sessions was strongly correlated with hamstring volumes only (r=5.91, P=0.01). <b>Conclusion:</b> This per-protocol analysis of FESC and PC early after SCI reports a partial response in 42% and a beneficial response in 25% of patients who completed 12 weeks intervention, regardless of mode. Strong correlations show a dose–response according to exercise frequency. Characteristics of non-responders are discussed to inform clinical decision-making.
DOI: 10.6084/m9.figshare.13003590.v1
title: Factors influencing thigh muscle volume change with cycling exercises in acute spinal cord injury – a secondary analysis of a randomized controlled trial

description: <b>Objective:</b> To conduct a per-protocol analysis on thigh muscle volume outcomes from the Spinal Cord Injury and Physical Activity (SCIPA) Switch-On Trial. <b>Design:</b> Secondary analysis from an assessor-blind randomized, controlled trial. <b>Setting:</b> Four acute/sub-acute hospitals in Australia and New Zealand. <b>Participants:</b> 24 adults (1 female) within four weeks of motor complete or incomplete spinal cord injury (SCI) <b>Intervention:</b> Functional electrical stimulation–assisted cycling (FESC) or passive cycling (PC) 4x/week for 12 weeks. <b>Outcome Measures:</b> Whole thigh and muscle group volumes calculated from manually segmented MR images. <b>Results:</b> 19/24 participants completed ≥ twelve weeks of the intervention. Five participants experienced hypertrophy (4 FESC; 1 PC) and eight attenuation of atrophy (&lt;20% volume loss) (3 FESC; 5 PC) in thigh muscle volume. Six participants were non-responders, exhibiting atrophy &gt;20% (3 FESC; 3 PC). Mean (SD) change for FESC was −2.3% (25.3%) and PC was −14.0% (12.3%). After controlling for baseline muscle volumes, a strong significant correlation was found between mean weekly exercise frequency and quadriceps and hamstring volumes (r=6.25, P=0.006), regardless of mode. Average watts was highly correlated to quadriceps volumes only (r=5.92, P=0.01), while total number of sessions was strongly correlated with hamstring volumes only (r=5.91, P=0.01). <b>Conclusion:</b> This per-protocol analysis of FESC and PC early after SCI reports a partial response in 42% and a beneficial response in 25% of patients who completed 12 weeks intervention, regardless of mode. Strong correlations show a dose–response according to exercise frequency. Characteristics of non-responders are discussed to inform clinical decision-making.
DOI: 10.6084/m9.figshare.13210627
title: Shoulder magnetic resonance imaging findings in manual wheelchair users with spinal cord injury

description: <b>Objective:</b> To investigate the prevalence of rotator cuff and long head of the biceps pathologies in manual wheelchair (MWC) users with spinal cord injury (SCI). <b>Design:</b> Cross-sectional study. <b>Setting:</b> Outpatient clinic at a tertiary medical center. <b>Participants:</b> Forty-four adult MWC users with SCI (36 men and 8 women) with an average age (SD) of 42 (13) years. SCI levels ranged from C6 to L1; complete and incomplete SCI. <b>Outcome Measures:</b> Participants’ demographic and anthropometric information, presence of shoulder pain, Wheelchair User’s Pain Index (WUSPI) scores, and magnetic resonance imaging findings of shoulder pathologies including tendinopathy, tendon tears, and muscle atrophy. <b>Results:</b> Fifty-nine percent of the participants reported some shoulder pain. The prevalence of any tendinopathy across the rotator cuff and the long head of biceps tendon was 98%. The prevalence of tendinopathy in the supraspinatus was 86%, infraspinatus was 91%, subscapularis was 75%, and biceps was 57%. The majority of tendinopathies had mild or moderate severity. The prevalence of any tears was 68%<b>.</b> The prevalence of tendon tears in the supraspinatus was 48%, infraspinatus was 36%, subscapularis was 43%, and biceps was 12%. The majority of the tears were partial-thickness tears. Participants without tendon tears were significantly younger (P &lt; 0.001) and had been wheelchair user for a significantly shorter time (P = 0.005) than those with tendon tears. <b>Conclusion:</b> Mild and moderate shoulder tendinopathy and partial-thickness tendon tears were highly prevalent in MWC users with SCI. Additionally, the findings of this study suggest that strategies for monitoring shoulder pathologies in this population should not be overly reliant on patient-reported pain, but perhaps more concerned with years of wheelchair use and age.