cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gc72v/6
title: Table2_CNR

description: Table 2. Contrast to noise estimates for all subjects.
DOI: 10.5061/dryad.gc72v/7
title: Table3_reliability

description: Table 3. Intra- and inter-rater reliability estimates.
DOI: 10.5061/dryad.gc72v/8
title: mri_dataset

description: High-resolution 3-Tesla MRI dataset including submillimetric T1-weighted images, T2-weighted images, and subregional hippocampal labels of 25 healthy subjects. Data are provided in nifti format and both native and stereotaxic space. The dataset also includes stereotaxic probabilistic anatomical maps of all subregions.  Please see README.txt for further details.
DOI: 10.5061/dryad.gq246/1
title: Year of sampling, geographic coordinates, and treatment status of sites
DOI: 10.5061/dryad.gq246/2
title: Microsatellite genotypes

description: "0" indicates alleles that were not scored due to failed amplification or ambiguous peak calling (0.17% of alleles).
DOI: 10.5061/dryad.gq246/3
title: Pairwise geographic and genetic distances

description: Lower triangle indicates genetic distance (Fst), and upper triangle indicates geographic distance (km).
DOI: 10.5061/dryad.gq246/4
title: STRUCTURE input files

description: Input files for all sites and sites west of the Rio Grande are included as separate sheets in the file.
DOI: 10.5061/dryad.kr006cf0.2
title: Data from: Harvest distribution and derivation of Atlantic Flyway Canada geese
DOI: 10.5061/dryad.kr006cf0.2/1.2
title: CAGO AP management plan March 2008 Final

description: The management plan created by the Atlantic Flyway to manage the Atlantic Population of Canada Geese.
DOI: 10.5061/dryad.kr006cf0.2/2.2
title: CAGO AFRP management plan final June 28 2011

description: The management plan created by the Atlantic Flyway to manage Resident Canada Geese.
DOI: 10.5061/dryad.kr006cf0.2/3.2
title: Munro and Kimball

description: Technical publication from the U.S. Fish and Wildlife Service.  The distribution and derivation of the mallard.
DOI: 10.5061/dryad.kt13g/1
title: Cold_shock_recovery

description: Summary of the cold shock recovery experiment
DOI: 10.5061/dryad.n1432/1
title: de_novo_assembly _files

description: This files contains the principal output files from the de_novo.pl pipeline from Stacks.
DOI: 10.5061/dryad.n1432/2
title: Biocode_Information_sheet

description: This file contains information about each of the raw data files that were uploaded to the SRA repository. The last column of the file includes the name of the site of each sample as in the publication.
DOI: 10.5061/dryad.n1432/3
title: 4559_loci_file

description: VCF file with information of all 4559 SNPs used for analyses in the publication. It can be converted to other formats such as Structure or Genodive.
DOI: 10.5061/dryad.n1432/4
title: data matrix_Information-theoretic approach

description: Data file used for the Information-theoretic approach. The results of this section of the paper can be duplicated by using this file and the associated R script (please see the Information_theoretic_aproach_script.R accompanying file)
DOI: 10.5061/dryad.pn795/1
title: Habitat variable voting & AHP evaluation of variables by experts

description: This Excel file contains four worksheets. The first worksheet contains the results of the voting for the inclusion of habitat variables into the habitat models for fisher, lynx, and marten, as voted by the biologist and trapper experts.  The next three worksheets contain the eigenvector scores resulting from the AHP elicitation, where the biologists and trappers evaluated the importance of each habitat variable for fisher, lynx, and marten.
DOI: 10.5061/dryad.q28h6/1
title: Ordination Data

description: This file contains the data used in the ordination portion of our analysis. “Site_Plot” lists the site and plot identifier where the data were collected. “Date” gives the date that the cover measurements were collected. The remaining columns give the cover measurements for each species, with the names corresponding to the species list in the supplementary material. For example, ACERUB is Acer rubrum. The cover measurement is the sum over the four subplots, so the values may range from 0-400%.
DOI: 10.5061/dryad.q28h6/2
title: Community Weighted Mean Trait Data

description: This file contains the data used the community weighted mean trait analyses, with the exception of climate data which was obtained from DAYMET (Thornton et al. 2012). The “Site_Plot” column lists the site and plot identifier where the data were collected. “Date” gives the date that the trait measurements were collected. “Elevation” is the height (cm) of the center of the plot above the nearest stream. “Bulk Density” is the plot soil bulk density (g/cm3). “Days Since Burn” is the number of days since the last fire. “Shannon Index” gives the Shannon Diversity Index, H. The remaining columns give the community weighted mean SLA (g/cm3) and LDMC (%) based on the landscape level species trait averages and the plot level species values.
DOI: 10.5061/dryad.vf896/1
title: Figure1-CitMinusExtinction

description: This file contains the data documenting the extinction of the Cit- ecotype
DOI: 10.5061/dryad.vf896/2
title: Figure2-CitMinusReinvasion

description: This file contains the data on the ability of a Cit- clone to reinvade Cit+ clones and populations.
DOI: 10.5061/dryad.05pk3/1
title: Lewis et al for Dryad
DOI: 10.5061/dryad.0cr7d/1
title: Main compressed file

description: In this compressed folder ("Dryad") you will find three subfolders:  (1) "Data" with phylogenetic trees, including the section-level MCC and the 100 posterior subtrees of clade 'Caesarea'. This subfolder also contains the tip latitudinal traits. (2) "Results" with three other subfolders, each one with raw result files from BAMM, QuaSSE, and DDD. Lastly, (3) "Simulations" contains the R script used for QuaSSE simulations.
DOI: 10.5061/dryad.1c4m9/1
title: RstatisticsColoredLightsRSOS

description: R file that contains manipulation of raw data, statistical analysis and plotting figures
DOI: 10.5061/dryad.1c4m9/2
title: Amillepora2011

description: Raw data from Pacific Field Season 1
DOI: 10.5061/dryad.1c4m9/3
title: Amillepora2011_prop

description: Reformatted data from Pacific Field Season 1
DOI: 10.5061/dryad.1c4m9/4
title: Pstrigosa2012

description: Raw data from Caribbean Field Season 1
DOI: 10.5061/dryad.1c4m9/5
title: Amillepora2012

description: Raw data from Pacific Field Season 2
DOI: 10.5061/dryad.1c4m9/6
title: PacificFieldSeason2_redvgreen

description: Analysis of larval fluorescence per family from Pacific Field Season 2
DOI: 10.5061/dryad.1c4m9/7
title: PFS2012red.green

description: Larval fluorescence values by family from Pacific Field Season 2. RGB values for each larva are normalized by the background RGB.
DOI: 10.5061/dryad.2ds6h/1
title: All spp. counts (for PCOA)

description: Raw count data of fish species of all ages captured at 45 sites in the New River basin of NC, VA and WV (USA) in summer 2012. These data were used for the principal coordinates analysis.
DOI: 10.5061/dryad.2ds6h/2
title: Grouped demographic data (for SEM and SGH regressions)

description: Stream fish data combined into reproductive groups (see Methods section of manuscript) and classified as adult or juvenile based on modal breaks in length frequency histograms   (see Methods section of manuscript). These data were used in structural equation modeling, and the juvenile portions of the dataset (divided by nest count) were used as response variables in regressions testing the stress-gradient hypothesis predictions.
DOI: 10.5061/dryad.2fk77/1
title: raw data Figure 1C

description: Height (mm) at which each individual larva (n=16) was found at the indicated time points. At each time point survival was monitored (alive/dead =A/D).
DOI: 10.5061/dryad.2fk77/2
title: raw data Figure 1B

description: Height (mm) at which each individual larva (n=16) was found at the indicated time points . At each time point survival was monitored (alive/dead =A/D).
DOI: 10.5061/dryad.2fk77/3
title: raw_data_Fig1D

description: Height (mm) at which each individual larva (n=32) was found at the indicated time points. At each time point survival was monitored (alive/dead =A/D).
DOI: 10.5061/dryad.4t7jk/1
title: PLINK MAP file for 274 genome-wide SNPs
DOI: 10.5061/dryad.4t7jk/2
title: Genotype data for 231 red grouse individuals
DOI: 10.5061/dryad.4t7jk/3
title: Sampling-related and phenotypic data for 231 red grouse individuals
DOI: 10.5061/dryad.4t7jk/4
title: Coordinates for 21 sampling sites
DOI: 10.5061/dryad.62247/1
title: Dataset1

description: Dataset D1
DOI: 10.5061/dryad.62247/2
title: Dataset2

description: Dataset D2
DOI: 10.5061/dryad.62247/3
title: Dataset3

description: Dataset D3
DOI: 10.5061/dryad.62247/4
title: SupplFig1

description: Supplementary Figure 1
DOI: 10.5061/dryad.62247/5
title: SupplFig2

description: Supplementary Figure 2
DOI: 10.5061/dryad.62247/6
title: SupplFig3

description: Supplementary Figure 3
DOI: 10.5061/dryad.66f8c/1
title: Simulated.dataS1

description: Simulated species 1 data, input to simulation R file
DOI: 10.5061/dryad.82gn0/1
title: Mass Spectrometry Data.Evf2++ Evf2TSTS

description: Mass spectrometry sequencing of DLX1 complexes isolated by affinity purification of mouse E13.5 embryonic brain ganglionic eminence nuclear extracts.  Complexes are analyzed from Evf2+/+ (wildtype) and Evf2TSTS (lacking the Evf2 long noncoding RNA) mice, and shown in two Excel sheets.
DOI: 10.5061/dryad.86q4k/1
title: fallow_data
DOI: 10.5061/dryad.88q18/1
title: Data for manuscript “Functional morphology and efficiency of the antenna cleaner in Camponotus rufifemur ants"

description: Excel file includes 3 data sheets. One sheet for each experiment. The corresponding figures from the manuscript are mentioned above the actual data.
DOI: 10.5061/dryad.c5m95/1
title: data for DRD4-ideology _Ebstein PRSB 2014
DOI: 10.5061/dryad.ct849/1
title: Ei-genotypes

description: The database contains the genotypes of 41 nesting hawksbills and 1,188 hatchling that were successfully genotyped at 12 polymorphic microsatellite loci. Paternal reconstructed genotypes are also includes. The name of the rookery is abreviated where: XV=Xicalango-Victoria, CK=Chenkan, CE=Celestun, CL=Las Coloradas, CY=El Cuyo, H=Holbox. Id letters identifies each nesting females, her offspring and the male that sired that clutch. In those cases where offspring contain and Id letter that is not on the females or fathers id indicates that it is a successive clutches of the same previously reported females (i.e. if there are offspring with and Id=B, but there are no females with these Id, then is a successive clutch from female A). In the cases where males Id have letter and number indicate that those multiple males sired a same clutch indicating multiple paternity
DOI: 10.5061/dryad.ct849/2
title: Reproductive success

description: Information of nesting females and reproductive success data of their clutches. Females that were marked were considered as neophytes or first time nesters, while recaptures were considered as experienced or older females. CCL= curve carapace length
DOI: 10.5061/dryad.dm98k/1
title: Raw microsatellite genotype data

description: Raw genotyping data for both Ciona intestinalis spA and spB.
DOI: 10.5061/dryad.f9801/1
title: Recruitment after 71 days
DOI: 10.5061/dryad.f9801/2
title: Cumulative Recruitment after 100 days
DOI: 10.5061/dryad.f9801/3
title: Early Recruitment
DOI: 10.5061/dryad.g28c8/1
title: Diaspidid_host_use_binary_byHostSpecies

description: Presence/absence data for armored scale insects on host genera compiled from the Hemiptera Tri-Trophic Database (https://research.amnh.org/pbi/locality/)
DOI: 10.5061/dryad.g28c8/2
title: Diaspidid_host_use_binary_byHostGenus

description: Presence/absence data for armored scale insects on host species compiled from the Hemiptera Tri-Trophic Database (https://research.amnh.org/pbi/locality/)
DOI: 10.5061/dryad.g3s10/3
title: Hautmann-et-al_AppendixS2

description: Appendix S2. Individuals per species and sample and diversity indices.
DOI: 10.5061/dryad.g3s10/4
title: Hautmann-et-al_AppendixS3

description: Appendix S3. Individuals per species and faunal interval, species’ ecology, evolutionary context and previousGriesbachian records of genera.
DOI: 10.5061/dryad.g3s10/5
title: Hautmann-et-al_AppendixS4

description: Appendix S4. Diversity and ecological parameters of faunal intervals FI1 – FI3.
DOI: 10.5061/dryad.kr006cf0.1
title: Data from: Harvest distribution and derivation of Atlantic Flyway Canada geese
DOI: 10.5061/dryad.kr006cf0.2/10.2
title: Harvey and Rodrigue 2011

description: A report detailing the Atlantic population of Canada geese and area surveyed.
DOI: 10.5061/dryad.kr006cf0.2/11.2
title: Distribution and Derivation Data

description: This zip file contains the raw data (reported direct recoveries, estimated recoveries, and estimated harvest) for each population for both adults and young. Within each spreadsheet the first tab shows the actual reported direct recoveries for each state and province within each year. Reward bands were used in 2004 and 2005 and are shown in the table. The second tab shows estimated recoveries calculated by adjusting the reported direct recoveries by a reporting rate. For all populations the reporting rate used came from Zimmerman et al. 2009. In the third tab in order to calculate the estimated harvest a weighting factor (the number of birds one banded bird represents) is needed. The weighting factor is calculated as the population estimate divided by the number of banded birds in a particular year. Estimated harvest is then calculated as the estimated recoveries multiplied by the weighting factor.
DOI: 10.5061/dryad.kr006cf0.2/13.2
title: Rusch et al. D&D of CAGO harvest in MF

description: Abstract of Distribution and Derivation of the Canada goose harvest in the Mississippi Flyway in Biology and Management of Canada geese. Proceedings of the International Goose Symposium, Milwaukee, Wisconsin, USA.
DOI: 10.5061/dryad.kr006cf0.2/5.2
title: 2005 FEIS Resident CAGO Management

description: The Final Environmental Impact Statement written by the USFWS on Canada Goose management.
DOI: 10.5061/dryad.kr006cf0.2/6.2
title: FINAL SJBP Management Plan 17 March 2008

description: The joint management plan created by the Mississippi and Atlantic Flyway to manage Southern James Bay Canada Geese.
DOI: 10.5061/dryad.kr006cf0.2/7.2
title: Final NAP Management Plan-July 2008

description: The management plan created by the Atlantic Flyway to manage the North Atlantic Population of Canada Geese.
DOI: 10.5061/dryad.kt13g/2
title: Population_Modelling

description: Results of the population modelling
DOI: 10.5061/dryad.kt13g/3
title: Differential_gene_expression_Blast

description: Read counts and blast results for the transcriptome assembly
DOI: 10.5061/dryad.kt13g/4
title: Genome-wide genetic divergence and genetic diversity
DOI: 10.5061/dryad.kt13g/5
title: Argiope_bruennichi_Transcriptome_Assembly.fasta
DOI: 10.5061/dryad.kt13g/6
title: Argiope_bruennichi_Genome_Assembly.fasta

description: Genome assembly of a Madeiran wasp spider (Argiope bruennichi)
DOI: 10.5061/dryad.n1432/5
title: Information_theoretic_aproach_script

description: R script used for the Information-Theoretic approach section.
DOI: 10.5061/dryad.n1432/6
title: candidate_loci_k2

description: List of candidate loci obtained with the lfmm function when the number of latent factors was set to K = 2. Note that Locus ID in this file is the same locus ID in the vcf file provided.
DOI: 10.5061/dryad.n1432/7
title: candidate_loci_k3

description: List of candidate loci obtained with the lfmm function when the number of latent factors was set to K = 3. Note that Locus ID in this file is the same locus ID in the vcf file provided.
DOI: 10.5061/dryad.n1432/8
title: tremix_MLtree_with_m5_

description: ML tree file from treemix. This is the resulting tree with five migration events that is shown in figure 5. The  first line of this file is the Newick format ML tree, and the remaining lines contain the migration edges. The  first column for these lines is the weight on the edge, followed by the jackknife estimate of the weight, the jackknife estimate of the standard error, and the p-values. Then come the subtree below the origin of the migration edge, and the subtree below the destination of the migration edge.
DOI: 10.5061/dryad.n1432/9
title: threepop_test_results_file

description: Results from the three population test run in trimix. The output is four columns. These are the populations used to calculate the f3 statistic, the f3 statistic, the standard error in the f3 statistic, and the Z-score.
DOI: 10.5061/dryad.pd7r6/1
title: top_50_most_common_refine

description: 50 most common amplicons aligned and refined.
DOI: 10.5061/dryad.pd7r6/2
title: top_50_midrr

description: Mid point re-routed bayesian phylogeny of top 50 most common amplicons with 2 million iterations
DOI: 10.5061/dryad.pd7r6/3
title: Consensus_types_align

description: Consensus of each mito type alignment
DOI: 10.5061/dryad.pd7r6/4
title: Consensus_types_with_4_align

description: consensus of each mito type alignment with addition of "type 4"
DOI: 10.5061/dryad.q8d7d/1
title: Biotic and climatic velocity for the Western Hemisphere

description: This zip file includes raster data representing biotic and climatic velocity for the Western Hemisphere for the period 1961 to 2100. We modeled velocity using climatic niche models originally published in Lawler et al. 2009. Projected climate-induced faunal change in the Western Hemisphere. Ecology 90:588-597. We used the code in the included R script to model biotic velocity for each individual species in Lawler et al. (2009). We then summarized velocity across all species in the three taxa groups, and further summarized across 10 climate-change general circulation models. We also modeled climatic velocity for each of 10 climate-change general circulation models. Each data file is a 50-kilometer resolution ESRI ASCII grid.
DOI: 10.5061/dryad.rs7b0.2
title: Data from: Novel forests maintain ecosystem processes after the decline of native tree species
DOI: 10.5061/dryad.rs7b0.2/1.2
title: novel_forest_primary_data

description: novel_forest_primary_data2.zip is a revision of novel_forest_primary_data.zip, added on 2012-05-03.
DOI: 10.5061/dryad.sj6n2/1
title: Skrip_et_al-data_REPOSITORY

description: This file contains data used to perform all statistical analyses; the last sheet of the workbook contains metadata describing the data in all other sheets.
DOI: 10.5061/dryad.vf896/3
title: Strain List

description: List of ID numbers of all clones and populations
DOI: 10.5061/dryad.10278/1
title: Tongue length density function parameter estimation

description: This is R script when run on the following five files [“Bumble bee community workers past - Front Range.csv”, “Bumble bee community workers past - Pennsylvania Mountain.csv”, “Bumble bee community workers present - Front Range.csv”, “Bumble bee community workers present - Pennsylvania Mountain.csv”, “Bumble bee tongue length - Macior 1974.csv”] will produce the parameter estimates for the multi-modal tongue length density function of 1000 simulated bumble bee communities. Two example outputs from this R script (those analyzed statistically for the above manuscript) are included in these data files [i.e., “Data from 'Tongue length density function parameters estimation' - Front Range.csv” and “Data from 'Tongue length density function parameters estimation' - Pennsylvania Mountain.csv”]
DOI: 10.5061/dryad.10278/2
title: Bumble bee community workers past - Front Range

description: This is the list of bumble bees (Bombus workers) as collected by L. W. Macior (1974) at Niwot Ridge Long Term Ecological Research Site and Mount Evans Wilderness Area in Colorado. Data from Mt. Evans and Niwot Ridge combined as in Macior 1974. Used in “Tongue length density function parameter estimation.r”.
DOI: 10.5061/dryad.10278/3
title: Bumble bee community workers past - Pennsylvania Mountain

description: This is the list of bumble bees (Bombus workers) as collected by P. A. Byron (1980) at Pennsylvania Mountain, CO. Used in “Tongue length density function parameter estimation.r”
DOI: 10.5061/dryad.10278/4
title: Bumble bee community workers present - Front Range

description: This is the list of bumble bees (Bombus workers) as collected by Nicole Miller-Struttmann and colleagues between 2012 and 2014 at Niwot Ridge Long Term Ecological Research site and Mount Evans Wilderness Area in Colorado. Data from Mt. Evans and Niwot Ridge combined as in Macior 1974. Used in “Tongue length density function parameter estimation.r”
DOI: 10.5061/dryad.10278/5
title: Bumble bee community workers present - Pennsylvania Mountain

description: This is the list of bumble bees (Bombus workers) as collected by Jenni Geib and colleagues in 2008, 2011 and 2013 at Pennsylvania Mountain, CO. Used in “Tongue length density function parameter estimation.r”
DOI: 10.5061/dryad.10278/6
title: Bumble bee tongue length - Macior 1974

description: Tongue length measurements from Macior 1974. Used in “Tongue length density function parameter estimation.r”COLUMN DETAILS:BB.SPECIES - bumble bee species name MEAN - mean tongue length (mm)STANDARD.DEVIATION - standard deviation in tongue length (mm)
DOI: 10.5061/dryad.10278/7
title: Data from 'Tongue length density function parameters estimation' - Front Range

description: Sample output (used in the associated manuscript) from the R script “Tongue length density function parameter estimation.r”. Provides the proportion of individual bumble bees in each subpopulation (short and long-tongued) and mean and standard deviation of tongue length in each subpopulation of bumble bees in the Front Range in the past and present. Bumble bee community data from Mt. Evans Wilderness Area and Niwot Ridge Long Term Ecological Research site combined as in Macior 1974.COLUMN DETAILS:REPLICATE - iteration from the resampling code (ranges from 1-1000)lambda1 - proportion of individuals in the short-tongued subpopulation of bumble bees mu1 - mean tongue length of the individuals in the short-tongued subpopulation of bumble bees sigma1 - standard deviation of tongue length for individuals in the short-tongued subpopulation of bumble beeslambda2 - proportion of individuals in the long-tongued subpopulation of bumble bees mu2 - mean tongue length of the individuals in the long-tongued subpopulation of bumble bees sigma2 - standard deviation of tongue length for individuals in the long-tongued subpopulation of bumble beesTIME – the timeframe during which the bees were originally collected in the Front Range (Mt. Evans and Niwot Ridge combined) and Pennsylvania Mountain (1966-1969 and 1977-1980, respectively)
DOI: 10.5061/dryad.19nf6/1
title: for_probe_design

description: Mitochondrial sequences filtered from 1KTIE project and used for capture array design.
DOI: 10.5061/dryad.19nf6/2
title: clustalw_pdis

description: Mitochondrial genes in the mock up samples and its top 5 similarity probes. Then, each cluster were aligned and calculated for P-distance.
DOI: 10.5061/dryad.19nf6/3
title: Mito_capture.final.2X.len65.probe

description: probes
DOI: 10.5061/dryad.23qp6/1
title: Cougar isotopic signature and covariates

description: Data describes GPS-collared cougars from the Colorado Front Range, monitored from 2007-2013. Data is in csv format, created with Microsoft Excel. Cougars were subadults (independent offspring &lt; 24 months) or adults (&gt;24 months with established home range). We describe isotopic signature of cougar hair (in delta-13C and delta-15N), sex, age at capture, and housing density. Housing density is the median density of housing units (in units/km2) over all of an individuals night-time GPS positions, and is a measure of the intensity of human influence in an individual's home range. We did not estimate housing density for individuals with fewer than 50 GPS locations, and we use asterisks to represent these individuals.