cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3610478_d2
title: MOESM1 of 3D-printing techniques in a medical setting: a systematic literature review

description: Additional file 1. Data overview. List of included articles with extracted data for OR time, accuracy, radiation, ease of use, cost, cost effectiveness and outcome.
DOI: 10.6084/m9.figshare.c.3610484_d1
title: Additional file 5: of Vitamin D interacts with Esr1 and Igf1 to regulate molecular pathways relevant to Alzheimer’s disease

description: List of DEGs known to be related to vitamin D action in the corertx and hippocampus of Wt and Tg mice. Genes containing a VDRE sequence are highlighted in grey. Table S13. Vitamin D related DEGs in Tg Cont, Tg VitD and Wt VitD mice. Table S14. Common vitamin D related DEGS between Tg Cont and TgVitD or between Tg Cont and Wt VitD. Table S15. Common vitamin D related DEGs between Tg Cont, Tg VitD and Wt VitD mice. (XLSX 95 kb)
DOI: 10.15468/dl.mj3kjn
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Skeletonemataceae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 191 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033098-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyzxuq
title: Occurrence Download

description: A dataset containing 33268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is CHN.6.15_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 33268 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033099-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3610604_d1
title: Additional file 1: of Longitudinal changes in physical activity and sedentary time in adults around retirement age: what is the moderating role of retirement status, gender and educational level?

description: Data file used for statistical analyses reported in this paper. (CSV 769Â kb)
DOI: 10.6084/m9.figshare.c.3610583_d4
title: Additional file 6: of Structural and functional annotation of the MADS-box transcription factor family in grapevine

description: Original expression data (RMA normalized) from the expression experiments described in Additional file 4. (XLSX 140 kb)
DOI: 10.6084/m9.figshare.c.3610607_d1
title: Additional file 8: of Transcriptomic analysis reveals specific osmoregulatory adaptive responses in gill mitochondria-rich cells and pavement cells of the Japanese eel

description: List of DEGs identified from FW MRCs and FW PVCs, and SW MRCs and SW PVCs. (XLSX 173 kb)
DOI: 10.6084/m9.figshare.c.3610592_d4
title: Additional file 4: Tables S1-S4. of EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data

description: Are Excel spreadsheets containing the EPIG-Seq clustered genes from the TCGA data samples 1 â   4 respectively. (XLSX 665 kb)
DOI: 10.5281/zenodo.12609408
title: Innovative approach for modelling gravity-induced signal path variations of VLBI radio telescopes (Dataset)

description: Gravitationally induced deformations of the receiving unit of radio telescopes used for Very Long Baseline Interferometry (VLBI) distort the observations and bias deduced products. As these deformations act systematically and are individual for each radio telescope, the International VLBI Service for Geodesy and Astrometry (IVS) calls for gravitational deformation investigations to correct VLBI data on the observation level. The most commonly used approach for modelling signal path variations was developed in 1988 during investigations at the 26 m VLBI radio telescope in Fairbanks (Alaska). This approach considers only homologous deformations of the receiving unit and takes into account three main deformation patterns affecting the signal path. For this reason, the measuring and modelling effort can be greatly simplified because the original spatial problem is reduced to a two-dimensional problem. However, more recent investigations refute the assumption of homogeneous deformations, and the receiver unit can be affected by arbitrary deformation patterns. Hence, identification and modelling as well as considering all parameterisable deformations in a corresponding correction function require specific and more complex analysing approaches. Based on Zernike polynomials an innovative approach for modelling signal path variations is presented in this contribution. In contrast to the conventional approach, the proposed approach models the entire receiving unit spatially, and is not restricted to a homologous deformation pattern. This new approach has been successfully exercised on the 26 m legacy VLBI radio telescope at the Mount Pleasant Radio Observatory Hobart (Tasmania). Despite the large dimensions of the legacy VLBI radio telescope, the detected deformations are unexpectedly small, and lead to signal path variations of less than 2 mm. The results of the investigation were derived from this dataset, which was obtained as part of a measurement campaign in February 2024. 
description: The data files define the raw data of the adjustment process, which were used to derive the signal path variation (SPV) of the 26 m VLBI Radio Telescope at the Mount Pleasant Radio Observatory Hobart.
DOI: 10.5281/zenodo.12609409
title: Innovative approach for modelling gravity-induced signal path variations of VLBI radio telescopes (Dataset)

description: Gravitationally induced deformations of the receiving unit of radio telescopes used for Very Long Baseline Interferometry (VLBI) distort the observations and bias deduced products. As these deformations act systematically and are individual for each radio telescope, the International VLBI Service for Geodesy and Astrometry (IVS) calls for gravitational deformation investigations to correct VLBI data on the observation level. The most commonly used approach for modelling signal path variations was developed in 1988 during investigations at the 26 m VLBI radio telescope in Fairbanks (Alaska). This approach considers only homologous deformations of the receiving unit and takes into account three main deformation patterns affecting the signal path. For this reason, the measuring and modelling effort can be greatly simplified because the original spatial problem is reduced to a two-dimensional problem. However, more recent investigations refute the assumption of homogeneous deformations, and the receiver unit can be affected by arbitrary deformation patterns. Hence, identification and modelling as well as considering all parameterisable deformations in a corresponding correction function require specific and more complex analysing approaches. Based on Zernike polynomials an innovative approach for modelling signal path variations is presented in this contribution. In contrast to the conventional approach, the proposed approach models the entire receiving unit spatially, and is not restricted to a homologous deformation pattern. This new approach has been successfully exercised on the 26 m legacy VLBI radio telescope at the Mount Pleasant Radio Observatory Hobart (Tasmania). Despite the large dimensions of the legacy VLBI radio telescope, the detected deformations are unexpectedly small, and lead to signal path variations of less than 2 mm. The results of the investigation were derived from this dataset, which was obtained as part of a measurement campaign in February 2024. 
description: The data files define the raw data of the adjustment process, which were used to derive the signal path variation (SPV) of the 26 m VLBI Radio Telescope at the Mount Pleasant Radio Observatory Hobart.
DOI: 10.6084/m9.figshare.c.3610583_d5
title: Additional file 2: of Structural and functional annotation of the MADS-box transcription factor family in grapevine

description: Complete annotation of grapevine MADS-box genes. These data were also been deposited at the Grapevine annotation platform. http://bioinformatics.psb.ugent.be/orcae/ (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3610607_d2
title: Additional file 7: of Transcriptomic analysis reveals specific osmoregulatory adaptive responses in gill mitochondria-rich cells and pavement cells of the Japanese eel

description: Gene ontology of DEGs identified from FW MRCs and SW MRCs. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3610607_d3
title: Additional file 6: of Transcriptomic analysis reveals specific osmoregulatory adaptive responses in gill mitochondria-rich cells and pavement cells of the Japanese eel

description: List of the 400 DEGs identified from FW PVCs and SW PVCs. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3610607_d10
title: Additional file 2: of Transcriptomic analysis reveals specific osmoregulatory adaptive responses in gill mitochondria-rich cells and pavement cells of the Japanese eel

description: Taxonomic distribution of the 12,003 identified eel gill transcripts. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3610607_d11
title: Additional file 1: of Transcriptomic analysis reveals specific osmoregulatory adaptive responses in gill mitochondria-rich cells and pavement cells of the Japanese eel

description: List of 12,003 identified transcripts in eel gill cells. (XLSX 28990 kb)
DOI: 10.6084/m9.figshare.c.3610667_d1
title: Additional file 2: of Rare and common epilepsies converge on a shared gene regulatory network providing opportunities for novel antiepileptic drug discovery

description: Expression datasets used in this study. (XLSX 35 kb)
DOI: 10.21335/nmdc-1698885798
title: Water column data on dissolved inorganic nutrients (nitrite, nitrate, phosphate and silicic acid) from the Nansen LEGACY cruises

description: Water column data on dissolved inorganic nutrients (nitrite, nitrate, phosphate and silicic acid) from the Nansen LEGACY cruises 2018: Joint Cruise 1-2, 2021: Seasonal Study Q1, 2021: Seasonal Study Q2, and 2021 Joint Cruise 2-1
DOI: 10.6084/m9.figshare.c.3610703_d3
title: Additional file 3: Table S2. of Transcriptome profiling reveals differential gene expression of detoxification enzymes in a hemimetabolous tobacco pest after feeding on jasmonate-silenced Nicotiana attenuata plants

description: Differentially expressed isotigs identified using RSEM estimated abundances. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3610730_d1
title: Additional file 2: Table S2. of The major horse satellite DNA family is associated with centromere competence

description: un-normalized read counts from ChIP-seq experiment and input control. (XLS 27Â kb)
DOI: 10.6084/m9.figshare.c.3610736_d1
title: Additional file 3: of Weevil endosymbiont dynamics is associated with a clamping of immunity

description: Detailed statistical analysis of RT-qPCR results. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3610730_d2
title: Additional file 1: Table S1. of The major horse satellite DNA family is associated with centromere competence

description: Enriched regions found on the unplaced contigs. The columns represent: the accession number of the contigs, the start and end position of the enriched region within the contig, the length of the region, and the statistical parameters calculated by the peak caller [pile-up, fold enrichment, -log10(p-value), -log10(q-value)]. Regions are listed according to their contig number. (XLS 211Â kb)
DOI: 10.6084/m9.figshare.c.3610697_d8
title: MOESM1 of HDAC inhibitors cause site-specific chromatin remodeling at PU.1-bound enhancers in K562 cells

description: Additional file 1: Table S1. DESeq2 output for differential accessibility (DNase-seq) following 72-h NaBut or SAHA treatment of K562 cells.
DOI: 10.6084/m9.figshare.c.3610736_d2
title: Additional file 1: of Weevil endosymbiont dynamics is associated with a clamping of immunity

description: Primers used in RT-qPCR experiments. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3610742_d1
title: Additional file 2: Table S2. of Exposure to various abscission-promoting treatments suggests substantial ERF subfamily transcription factors involvement in the regulation of cassava leaf abscission

description: Putative AP2/ERF genes expressed during ethylene- and water-deficit stress-induced leaf abscission. (XLS 1472 kb)
DOI: 10.6084/m9.figshare.c.3610763_d1
title: Additional file 2: of Profiling olfactory stem cells from living patients identifies miRNAs relevant for autism pathophysiology

description: Raw expression value. (XLSX 115 kb)
DOI: 10.5281/zenodo.14440562
title: Smart Protein LCC data
DOI: 10.5281/zenodo.14440563
title: Smart Protein LCC data
DOI: 10.15468/dl.9funau
title: Occurrence Download

description: A dataset containing 9568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemiaulaceae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9568 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033101-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrff9t
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mozambique",
 "TaxonKey is Dalbergia melanoxylon Guill. & Perr."
 ]
}

 The dataset includes 157 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033102-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23673/re-495
title: Research data for Early trigeminal and sensory impairment and lysosomal dysfunction in accurate models of Wolfram syndrome

description: We present here data from our paper Early trigeminal and sensory impairment and lysosomal dysfunction in accurate models of Wolfram syndrome. We include data underlying all figures and tables. Research data for publicly available data can be found as cited in README file.
DOI: 10.6084/m9.figshare.c.3610871_d1
title: Additional file 1: of Uptake of services for prevention of mother-to-child transmission of HIV in a community cohort in rural Tanzania from 2005 to 2012

description: Adjusted coverage estimates for the proportion of HIV-positive pregnant women who a) accessed ANC, b) enrolled in care at PMTCT/CTC, and c) accessed ARVs, in each pregnancy by year. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3610877_d1
title: Additional file 10: of RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk

description: List of the 110 genes belonging to eleven functional oligosaccharides metabolism categories with FPKM expression in D1 and D2 samples. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3610877_d2
title: Additional file 6: of RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk

description: DAVID Functional Annotations and Clustering for up-regulated and down-regulated genes in D1 sample. The most significant enriched GO categories under Biological Process, Molecular Function, and Cellular Component are included in a summary sheet. (XLSX 111 kb)
DOI: 10.6084/m9.figshare.c.3610877_d3
title: Additional file 3: of RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk

description: Enriched Kegg pathway analysis in D1 and D2 lactation samples. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3610877_d4
title: Additional file 4: of RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk

description: DAVID Functional Annotations and Clustering for highly expressed genes in D1 and D2 lactation samples. (XLS 154 kb)
DOI: 10.6084/m9.figshare.c.3610877_d8
title: Additional file 5: of RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk

description: Differentially Expressed Genes (DEGs) between D1 and D2 lactation samples. (XLS 89 kb)
DOI: 10.6084/m9.figshare.c.3610877_d10
title: Additional file 1: of RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk

description: Cufflink/Cuffmerge transcriptome in D1 and D2 lactation samples. Information on gene annotation, Gene Ontology terms and Kegg pathways are included. (XLSX 5997 kb)
DOI: 10.13120/962dd666-0aef-4792-8bff-c9f8129f701f
title: European floating micro-litter standardized, harmonized and validated datasets 2011/2023 v2024
title: European_floating_micro-litter_standardized_harmonized_and_validated_datasets_2011/2023_v2024

description: EMODnet Chemistry aims to provide access to marine chemistry datasets and derived data products concerning eutrophication, acidity, contaminants and marine litter. The importance of the selected substances and other parameters relates to the Marine Strategy Framework Directive (MSFD). This aggregated dataset contains all unrestricted EMODnet Chemistry data on floating micro-litter.

This dataset is the result of a validation and harmonisation process of the datasets concerning floating micro-litter present in EMODnet Chemistry. The datasets concerning micro-litter are automatically harvested and the resulting collections are harmonised and validated using ODV Software and following a common methodology for all sea regions. Parameter names are based on P01 vocabulary, which relates to BODC Parameter Usage Vocabulary and is available at: https://vocab.nerc.ac.uk/search_nvs/P01/. This process was performed by ‘Istituto Nazionale di Oceanografia e di Geofisica Sperimentale, Division of Oceanography (OGS/NODC)’ from Italy.

Harmonisation means that: (1) unit conversion is carried out to express variables with a limited set of measurement units and (2) merging of variables described by different “local names”, but corresponding exactly to the same concepts in BODC P01 vocabulary.
The harmonised dataset can be downloaded as ODV collection that can be opened with ODV software for visualization (More information can be found at: https://www.seadatanet.org/Software/ODV). The same dataset is offered as spreadsheet (txt format, tab separated values) where the values of the categories for the following reported parameters (type, shape, size, color, transparency and material) have been uniformed as labelled in the SeaDataNet H01, H02, H03, H04, H05, H06 vocabularies (https://vocab.seadatanet.org/search). This format is more adapted to worksheet applications (e.g. LibreOffice Calc).
DOI: 10.6084/m9.figshare.c.3610967_d6
title: MOESM9 of Loss and conservation of evolutionary history in the Mediterranean Basin

description: Additional file 9. Species not found in any protected areas and their respective HEDGE and BED scores. Data: Species not found in any protected areas of category I, II and IV, a * means that the species is not present in any protected area.
DOI: 10.6084/m9.figshare.c.3610967_d8
title: MOESM10 of Loss and conservation of evolutionary history in the Mediterranean Basin

description: Additional file 10. Data-deficient species and their BED scores. Data-deficient mammal and squamate species and their BED scores (there are no amphibian DD species in the Mediterranean basin).
DOI: 10.6084/m9.figshare.c.3610967_d10
title: MOESM11 of Loss and conservation of evolutionary history in the Mediterranean Basin

description: Additional file 11. HEDGE and BED scores of all Mediterranean species. HEDGE and BED scores of all Mediterranean species.
DOI: 10.6084/m9.figshare.c.3611012_d9
title: Additional file 1: of Sex chromosome evolution in snakes inferred from divergence patterns of two gametologous genes and chromosome distribution of sex chromosome-linked repetitive sequences

description: Primers used for this study. This table shows information of primers used for PCR amplification of partial sequences of CTNNB1 and WAC genes, and for RACE to determine full-length cDNA sequences of the two genes in E. quadrivirgata. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3611048_d1
title: Additional file 1: of NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease

description: List of differentially expressed genes. This file contains the list of differentially expressed genes (for each dataset used) that fall under the adjusted p-value cutoff of 0.05. The differential expression analysis was performed using limma package in R statistical environment. The file is provided in an Excel format. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.c.3611054_d1
title: Additional file 1: of Characterization of B cells in healthy pregnant women from late pregnancy to post-partum: a prospective observational study

description: Correlation coefficients between counts (and percentages) of B cell subsets and age, both for pregnant and non-pregnant women. aHealthy non-pregnant women; bThird trimester of pregnancy; cWithin 15 min after placental expulsion; dAt least 6 weeks after delivery; eSpearman correlation coefficient. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3611087_d5
title: Additional file 12: Table S10. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: ChIP signals enriched upstream of genes in FACS-sorted samples. (XLSX 361Â kb)
DOI: 10.6084/m9.figshare.c.3611087_d6
title: Additional file 3: Table S2. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Expression intensity of reporters in each cell. (XLSX 109Â kb)
DOI: 10.6084/m9.figshare.c.3611087_d7
title: Additional file 13: of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Web supplement. (DOC 21Â kb)
DOI: 10.6084/m9.figshare.c.3611087_d8
title: Additional file 7: Table S5. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Computed enrichments for each gene. (XLSX 5515Â kb)
DOI: 10.6084/m9.figshare.c.3611087_d9
title: Additional file 14: Table S11. of Overlapping cell population expression profiling and regulatory inference in C. elegans

description: Number of motifs found significant using different numbers of clusters, at different cutoffs. (XLSX 5Â kb)
DOI: 10.6084/m9.figshare.c.3611126_d10
title: Additional file 10: Table S6. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: List of enriched GO terms for the set of human genes associated with high-confidence mapped FANTOM5 human promoters to the pig genome. List of enriched GO terms for the target set of 3794 human genes which are associated with FANTOM5 human promoters mapped with high confidence to the pig genome (i.e. supported by pig CAGE and RNA-Seq expression signal) versus the background set of human genes with FANTOM5 human promoter. GO enrichment analysis was performed using GOrilla [54]. See Additional file 3: Table S1 for the description of each column. (XLS 4622 kb)
DOI: 10.6084/m9.figshare.c.3611126_d11
title: Additional file 2: Table S2. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

description: Table S2A â   Locations of FANTOM5 human promoters mapped to the pig genome. Table contains the following columns (left to right): FANTOM5 human promoter ID, Ensembl gene ID associated with the FANTOM5 human promoter, mapping locations to the pig genome (Sscrofa10.2), the nearest pig Ensembl ID to the mapped promoter (strand-specific) and the number of pig CAGE CTSS and/or RNA-Seq signal (assembled transcripts from pooled macrophage libraries) located within a 20 Kb window from the 3â  -end of the mapped promoter. Table S2B â   Locations of FANTOM5 human promoters mapped to the mouse genome. Table contains the following columns (left to right): FANTOM5 human promoter ID, Ensembl gene ID associated with the FANTOM5 human promoter, mapping locations to the mouse genome (mm9), the nearest mouse Ensembl ID to the mapped promoter (strand-specific). (ZIP 5853 kb)