cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/6ft99kf89b
title: ONUBAD: An Extensive Dataset for Automated Translation of Bangla Regional Dialects into Standard Bangla Language

description: 1. Although extensive research has been conducted on the Bangla language in natural language processing (NLP), a substantial resource gap exists for its various regional dialects, including those spoken in Chittagong, Sylhet, and Barisal.

2. Linguists even classify these as separate languages. To address this, we introduce ONUBAD, an extensive and open-access dataset for the automated translation of Chittagong, Sylhet, and Barisal dialects into Standard Bangla.

3. The translation of regional dialects into Standard Bengali can enhance communication between local farmers and agricultural extension services, help preserve cultural identity and heritage, and provide a valuable resource for research in the field of natural language processing (NLP).

4. The data was extracted from various Facebook pages, websites, and regional people in Bangladesh. It was selectively collected to ensure balanced representation across different data labels. Additionally, the data has been annotated by native experts in Bangla regional dialects.

5. This dataset captures the most frequently regional words, clauses, and sentences which consist of total 6160 words, 520 clauses, and 3920 sentences from different regions, including Chittagong, Barisal, Sylhet, and Standard Bangla. The dataset details are as follows:

Barisal:
---------
Words: 1540 Clause: 130 Sentence: 980

Sylhet:
--------
Words: 1540 Clause: 130 Sentence: 980

Chittagong:
-------------
Words: 1540 Clause: 130 Sentence: 980

Standard Bangla:
-------------------
Words: 1540 Clause: 130 Sentence: 980

English Translation:
-------------------
Words: 1540 Clause: 130 Sentence: 980
DOI: 10.17632/cdhv9dgyrk
title: NOACs Versus LMWH in Critically Ill Patients with COVID-19

description: Research Hypothesis:
This study hypothesizes that the use of Novel Oral Anticoagulants (NOACs) compared to Low-Molecular-Weight Heparin (LMWH) in critically ill COVID-19 patients before the vaccination era results in different clinical outcomes, particularly in terms of thrombotic and bleeding events.
Objective: To compare the effectiveness and safety of NOACs with those of low-molecular-weight heparins (LMWHs) among unvaccinated critically ill patients.
Data Overview:
The dataset was extracted from the Epimed Monitor system, encompassing a retrospective, observational, unicentric study of critically ill patients with COVID-19. The data includes detailed clinical and demographic information, as well as treatment outcomes for patients who received either NOACs or LMWH. This dataset was carefully filtered and organized in RStudio to support robust statistical analyses.
Notable Findings:
Preliminary analyses indicate potential differences in outcomes between patients treated with NOACs versus LMWH, particularly concerning the incidence of thrombotic events and major bleeding. These findings suggest the need for further investigation into the efficacy and safety of these anticoagulants in critically ill patients during the pre-vaccination period of the COVID-19 pandemic.
Data Interpretation:
The dataset includes deidentified participant data, structured into multiple variables that capture relevant clinical information, treatment regimens, and patient outcomes. Users of this data can replicate the analyses conducted in this study or perform secondary analyses to explore additional hypotheses. The dataset is particularly valuable for researchers interested in the management of anticoagulation in critically ill COVID-19 patients.
Usage and Accessibility:
The data is publicly accessible via Mendeley Data and can be used by other researchers following appropriate citation. This dataset is a valuable resource for understanding the impact of different anticoagulant therapies on the clinical outcomes of COVID-19 patients in intensive care settings before the availability of vaccines.
DOI: 10.6084/m9.figshare.16968334.v4
title: China global Land Surface Air Temperature 2.0 during 1850-2020

description: The China global Land Surface Air Temperature 2.0 (China-LSAT2.0) datasets consist of two datasets, China-LSAT2.0 and reconstructed China-LSAT2.0, while each dataset includes three temperature-related elements, including monthly average, maximum, and minimum temperatures. An nc file contains one temperature element inside, the nc file containing the monthly average temperature with the _tavg suffix, containing the monthly maximum temperature with the _tmax suffix, containing the monthly minimum temperature with the _tmin suffix.<br>
DOI: 10.6084/m9.figshare.21267369.v2
title: GPS RINEX data from Trignet

description: GPS RINEX data at SCOT station on 13 July 2012. <br> More GPS RINEX data are available from Trignet (http://trignet.co.za/)<br> Data access:<br> The data service is provided through a File Transfer Protocol (FTP) link within the TrigNet website.<br> The Uniform Resource Locator (URL) for this link is ftp://ftp.trignet.co.za.
DOI: 10.6084/m9.figshare.24980065.v1
title: Additional file 2 of Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration

description: Additional file 2: Table S1. Description of the features used in model training. Table S2. Description of train-test splits in the study. Table S3. Model evaluation of feature engineering. Table S4. SHAP values from model predicting the gRNA depletion. Table S5. Model evaluation of data fusion. Table S6. Model evaluation of data fusion with other model types. Table S7. Model evaluation of segregating gene and guide effects. Table S8. SHAP values from segregation models. Table S9. SHAP interaction values from MERF. Table S10. Description of gRNAs targeting deGFP. Table S11. Description of gRNAs in miller assay. Table S12. Model evaluation for targeting deGFP and Miller assay. Table S13. Description of gRNAs for screen of purine biosynthesis genes. Table S14. Model evaluation of saturating screen of purine biosynthesis genes. Table S15. List of strains. Table S16. List of plasmids. Table S17. List of oligos for plasmid construction, library generation, and sequencing.
DOI: 10.6084/m9.figshare.27115465.v2
title: ALIGNN_BERT_TL project dataset

description: Stored staging data from ALIGNN_BERT_TL pipeline.<br>data0.csv - ALIGNN embeddings for dft-3d dataset. The embeddings are generated from ALIGNN transfer learning work following instructions in https://github.com/NU-CUCIS/ALIGNNTL/tree/main?tab=readme-ov-file#alignntl-feature-extractionrobo_0_75993.csv: Generated text descriptions for JARVIS dft-3d dataset using Robocystallographer tool.
DOI: 10.6084/m9.figshare.29020292.v1
title: LOCOMOTIVE study

description: <b>Abstract</b>Although brain alterations may occur in post-acute sequelae of SARS-CoV-2 (PASC), their universality and link to neurodegeneration remain unclear. Here, we analyzed blood proteins and brain magnetic resonance imaging in individuals who experienced mild COVID-19 about a year prior, categorized into three groups: Cog-PASC (with cognitive impairment), Other-PASC (without cognitive impairment), and non-PASC controls. The Cog-PASC group showed elevated blood levels of astroglial damage-associated protein, reduced cingulate and insular cortical thickness, and increased paramagnetic susceptibility, indicating iron deposition, particularly in the cingulate cortex and hippocampus. We demonstrated increased choroid plexus volume in Cog-PASC compared to Other-PASC patients, associated with neuronal/astroglial damage, cortical thinning, and iron deposition. Blood proteomic analysis showed significantly altered proteins involved in oxidative stress responses and synaptic function in Cog-PASC patients, linked to neurodegenerative pathways. These findings suggest distinct neurodegenerative processes in Cog-PASC that are not observed in other PASC subtypes, even after mild COVID-19 infection.<br><b>Data collection</b>Data collection for follow-up clinical, imaging, and blood analyses has been completed for this study. This preliminary study aimed to investigate brain MRI and blood proteomics of the discovery cohort to assess whether patients exhibit distinct brain damage, structural alteration, and neurodegenerative processes primarily at the baseline following SARS-CoV-2 infection. Brain MRI scans are performed at baseline and after 1 year, primarily to assess longitudinal structural changes in the brain, including grey matter alterations. Blood samples are collected at baseline, 6 months, and 1 year, while symptom evaluation questionnaires are administered every 3 months.- Cognitive Assessments: Conducted using the Montreal Cognitive Assessment (MoCA), FAS, and PASC symptom scores.- Biological Samples: Serum and plasma samples were collected for proteomic analysis using the Olink 3,072 Explore using Proximity Extension Assay (PEA) technology and SIMOA (Single Molecule Array) HD-X platform.- Imaging: Brain MRI analysis for cortical parcellation, paramagnetic susceptibility, choroid plexus segmentation, and diffusion tensor imaging along perivascular spaces (DTI-ALPS) were performed at baseline to detect structural brain changes.
DOI: 10.17632/3tc72r2m4z
title: GutierrezBarragan_CB2021_halothane_rsfMRI_mouse_part2

description: Resting state fMRI data from n=9/19 mice under medetomidine-isoflurane anesthesia (mice were first deeply anesthetized with isoflurane 4% induction, intubated and artificial ventilated 90 BPM, then switched to halothane 0.75%) from Gutierrez-Barragan et al. 2021  (DOI pending). Scans were acquired at the IIT laboratory in Rovereto (Italy) on a 7.0 Tesla MRI scanner (Bruker Biospin, Ettlingen) with a BGA-9 gradient set, a 72 mm birdcage transmit coil, and a four-channel  solenoid receive coil. Awake scans used a single-shot echo planar imaging (EPI) sequence with the following parameters: TR/TE=1200/15 ms, flip angle=60°, matrix=100 x 100, 24 coronal slices (voxel-size 200 x 200 x 500 µm), for a total of 1600 time points, total acquisition time of 32 minutes.  It is suggested to remove the first 100 scans (2 minutes) to account for thermal gradient equilibration.
DOI: 10.17632/kcccvtw3n4
title: Device fabrication of CsPbI3 perovskite based on MAAc solution without additives and antisolvent engineering in air condition

description: In this data, reported characterizations (absorption spectra, morphology) and device parameters of CsPbI3 perovskite solar cells based on the methylammonium acetate (MAAc) solution. The device parametrs (Voc, Jsc FF and PCE)  were tested of CsPbI3 perovskite solar cells via a Keithley 2420 source measurement unit under simulated 100 mW/cm2 (AM 1.5 G) irradiation from a Newport solar simulator. The results in this paper describe the optimization parameters of PSC based on MAAc solution and directly related to our research paper “High-performance CsPbI3 perovskite solar cells without additives in air condition”
DOI: 10.17632/yybfdy8ggg
title: Replication package for "From Dominant to Producer Currency Pricing: Dynamics of Chilean Exports"

description: This replication package includes artificially generated data and code for "From Dominant to Producer Currency Pricing: Dynamics of Chilean Exports" by José De Gregorio, Pablo García, Emiliano Luttini and Marco Rojas.

Access to the micro data used in this project was achieved through a non-disclosure agreement with the Central Bank of Chile; thus access to the actual data cannot be granted. Artificially generated data is used in this package that mimics the structure of the actual micro data, hence the figures/tables reproduced here do not coincide with those of the paper.
DOI: 10.6084/m9.figshare.28007054.v1
title: VHB data

description: VHB data, produced by:<b>Sana Rouis</b><b>, Soumaya Mrabet</b><b>, Mohamed Ferjaoui</b><b>, Nedia Ben Lasfar</b><b>, Jihene Sahli</b><b>, Syrine Boujamline</b><b>, Rym Ayari</b><b>, Maha Abid</b><b>, Manel Ben Selma</b><b>, Mariem Ben Ticha</b><b>, Foued Bellazreg</b><b>, Elhem Ben Jezia</b><b>, Amel Letaief</b><b>, Wissem Hachfi.</b>
DOI: 10.17632/h3r2gj8gvm
title: CONUS Road Network Data

description: CONUS Road Transportation Network used for network vulnerability modeling on behalf of USTRANSCOM.
DOI: 10.6084/m9.figshare.14035196.v1
title: Zhejiang Database annotations

description: New delineations performed on an OTVA dataset from the Ningbo First Hospital of Zhejiang University, as described in:<br>Zheng, J., Fu, G., Anderson, K. <i>et al</i>. A 12-Lead ECG database to identify origins of idiopathic ventricular arrhythmia containing 334 patients. <i>Sci Data</i> <b>7</b>, 98 (2020). https://doi.org/10.1038/s41597-020-0440-8<br><br><br>
DOI: 10.6084/m9.figshare.20146943.v2
title: G-SchNet for OE62

description: OE62 data set + molecues generated with G-SchNet trained on the OE62 data set. Minimal tutorial for using the SchNet+H models and the adapted G-SchNet model individually and for creating new molecules with targeted properties. Includes the code from https://github.com/rhyan10/G-SchNetOE62 and https://github.com/schnarc/SchNarc/ used for this tutorial.
DOI: 10.6084/m9.figshare.7120796.v1
title: CRISPR screen of isogenic STAG2 mutant cell lines

description: Comparison of STAG2 mutant and STAG2 wild-type cell lines using CRISPR genome-wide knockout screen.
DOI: 10.17632/mwyj4m963h
title: Data for "Phylogenomics reveals the evolution, biogeography, and diversification of voles in the Hengduan Mountains"

description: The Hengduan Mountains (HDM) of Southwest China are a biodiversity hotspot whose temperate flora and fauna are among the world's richest. However, the origin and evolution of biodiversity in the HDM region remain poorly understood, especially in mammals. Given that the HDM region shows the highest richness of vole species in the world, we used whole-exome capture sequencing data from the most comprehensive sampling of HDM voles performed to date to investigate their evolutionary history and diversification patterns. We reconstructed a robust species phylogeny and re-estimated the divergence times of the HDM voles. We found that all HDM vole species could be divided into a western lineage (Volemys, Proedromys, and Neodon) and an eastern lineage (Caryomys and Eothenomys), and the two lineages originated from two migration events from North Eurasia to the HDM approximately 9 million years ago (Mya). Both vole lineages underwent a significant acceleration of net diversification from 8-5 Mya, which was temporally congruent with the orogeny of the HDM region. We also identified strong intertribal gene flow among the HDM voles and hypothesized that frequent gene flow might have facilitated the speciation burst of the HDM voles. Our study highlights the importance of both environmental and biotic factors in shaping the biodiversity of mammals in mountain ecosystems.
DOI: 10.6084/m9.figshare.21671459.v1
title: Cell counting retina Fig.2

description: Dataset supporting cell counting results on retinas Fig.2
DOI: 10.6084/m9.figshare.26791894.v2
title: Quasi Maximum Likelihood Estimation for Large-Dimensional Matrix Factor Models

description: In this study, we introduce a novel approach, called the quasi maximum likelihood estimation (Q-MLE), for estimating large-dimensional matrix factor models. In contrast to the principal component analysis based approach, Q-MLE considers the heteroscedasticity of the idiosyncratic error term, the heteroscedasticity of which is simultaneously estimated with other parameters. Interestingly, under the homoscedasticity assumption of the idiosyncratic error, the Q-MLE estimator encompassed the projected estimator (PE) as a special case. We provide the convergence rates and asymptotic distributions of the Q-MLE estimators under mild conditions. Extensive numerical experiments demonstrate that the Q-MLE method performs better, especially when heteroscedasticity exists. Furthermore, two real examples in finance and macroeconomics reveal factor patterns across rows and columns, which coincide with financial, economic, or geographical interpretations.
DOI: 10.6084/m9.figshare.3559059.v1
title: Appendix A. Statistical tables of predation on insects and effects on herbivory and figures that show insect abundances and herbivory prior to the experiment, sticky trap samples by order, and changes in leaf damage.

description: Statistical tables of predation on insects and effects on herbivory and figures that show insect abundances and herbivory prior to the experiment, sticky trap samples by order, and changes in leaf damage.
DOI: 10.6084/m9.figshare.8118197.v2
title: Journal publication cost tables and scenarios

description: For many decades, the hyperinflation of subscription prices for scholarly journals have concerned scholarly institutions. After years of fruitless efforts to solve this “serials crisis”, open access has been proposed as the latest potential solution. However, also the prices for open access publishing are high and are rising well beyond inflation. What has been missing from the public discussion so far is a quantitative approach to determine the costs of publishing a scholarly article, such that informed decisions can be made as to appropriate price levels. Here we provide a granular, step-by-step calculation of the costs associated with publishing primary research articles, from submission, through peer-review, to publication, indexing and archiving. We find that these costs range from less than US$200 per article in modern, large scale publishing platforms using post-publication peer-review, to about US$1,000 per article in prestigious journals with rejection rates exceeding 90%. The publication costs for a representative scholarly article today come to lie at around US$400. We discuss the additional non-publication cost items that make up the difference between publication costs and final price. The dataset refers to calculations about the scenarios described in a publication about that topic. <br>
DOI: 10.17632/7r26525hts
title: Giuliano et al., 2025

description: Garlic nanoemulsions with a high concentration of active ingredients and a low percentage of surfactants were developed. The nanoinsecticidea were obtained using low (LP) and high (HP) pressure microfluidization at 2,000 psi and 20,000 psi respectively.
DOI: 10.17632/t4b6t59xp7
title: Empirical Approach for Determining the Shear Strength of Rock Discontinuities

description: Supplementary file of paper
DOI: 10.6084/m9.figshare.25239952.v1
title: RepeatMasker outfile from Solea senegalensis genome

description: Pleuronectiformes are flatfishes with high commercial value and a prominent example of successful marine adaptation through chromosomal evolution. Hence, the aim of this study was to analyze the relative abundance of repetitive elements in the genome of 10 fish species (8 flatfish) delving into the study of the species of special relevance, Senegalese sole, Solea senegalensis. The results showed differences in the abundance of repetitive elements, with S. senegalensis exhibiting the highest frequency and coverage of these elements reaching the 40% of the genome and not at random distribution. It is noteworthy the presence of relevant peaks of Helitrons in centromeric/pericentromeric positions mainly in the bi-armed chromosomes 1, 2, 4, 6, 7, and 9. The position of the centromeres of this species determined through the genomic localization of the family of satellite DNA PvuII, and other repetitive sequences was obtained de novo. This allowed us to know the genomic position of the centromeres in 19 out of the 21 chromosomes of S. senegalensis. Helitrons showed an accumulation of tandem copies mainly in the pericentromeric positions of chromosomes 1 and 2, occupying a region, in the first case, of 600Kb of tandem repeats. That has only been previously described in mammals and plants. Divergence and copy number studies indicated the possible presence of active families in the species’ genome and the existence of two important events of transposon activity (burst) in the genome of S. senegalensis, mainly accentuated in Helitrons. The results showed that only the families of DNA transposons exhibited a landscape with symmetrical bell-shaped distribution. The phylogenetic analysis of Helitron families revealed the presence of two large groups of families and the presence of four groups of sequences with heterogeneous distribution among chromosomes. Finally, the phylogenomic analysis of 8615 sequences belonging to Helitron insertions from 5 families of flatfish and two external species, allowed to classify the copies into nine groups of sequences with different levels of divergence and clusters, including some branches with distant phylogenetically species. The implications of this study will help to expand the knowledge of chromosome structure and evolution of these species
DOI: 10.6084/m9.figshare.25778430.v1
title: High-Altitude Object Detection algorithm

description: The High-Altitude Object Detection algorithm solves the problem of extremely small parabolic target and inconspicuous parabolic characteristics
DOI: 10.6084/m9.figshare.8158097.v1
title: Carbepenem acyl-enzyme parameters (for beta-lactamase simulations): Meropenem

description: Acyl-enzyme parameters used in the following publication:"QM/MM simulations as an assay for carbapenemase activity in class A β-lactamases"<br>Chudyk EI, Limb MAL, Jones C, Spencer J, Van der Kamp MW, Mulholland AJ. 2014. <i>Chem Commun 50</i>, 14736<br>DOI: 10.1039/c4cc06495j<br><br><br>Acyl-enzyme of Meropenem (incl. Ser70) Files: MER.off, MER.frcmodResidue name: MERAtom names are labeled in: MER_atom_names.png<br>Parameterisation procedure: Initial Amber ff14SB force field parameters for the acylated Ser-70 residue (with caps on either side) were obtained from the RED Server (partial charges from HF/6-31G(d,p) RESP-fitting and atom types). For missing parameters, chemically equivalent parameters from the GAFF force field were used.
DOI: 10.17632/72h228rp33
title: HINT1 gene polymorphisms rs3864236, rs2526303, rs2551038, and personality traits measured by NEO-FFI and STAI in a group of cigarette users and never-smokers.

description: The dataset includes 522 participants (371 cigarette users and 151 never-smokers) with their age, sex and smoking status. 
Both cigarette users and controls were examined using the NEO Five-Factor Personality Inventory (NEO-FFI) and the State-Trait Anxiety Inventory (STAI). NEO-FFI analyses five traits - neuroticism, extroversion, openness to experience, agreeableness, and conscientiousness. STAI measures anxiety as a trait and as a state. The results of NEO-FFI and STAI were expressed as sten scores. The conversion of the raw score to the sten scale was conducted by the Polish standards for adults, with a sten value of 0-3 corresponding to low results, 4–6 corresponding to average results and 7–10 corresponding to high results.
The histidine triad nucleotide-binding protein (HINT1) gene's three polymorphic sites were genotyped: rs3864236, rs2526303, and rs2551038.
DOI: 10.17632/s2jkdcc3s5
title: Emotional intelligence, job satisfaction and life satisfaction in Polish teachers during the second wave of the COVID-19 pandemic

description: The data include a sample of 322 teachers from Poland. The web-based survey was performed between November 2020 and January 2021, during the second wave of the COVID-19 pandemic in Poland. The survey included the Multi-Factor Emotional Intelligence Scale (MEIS), Minnesota Satisfaction Questionnaire (MSQ) - short form, and Satisfaction With Life Scale (SWLS). The mediating effect of job satisfaction on the relationship between emotional intelligence and life satisfaction was examined and partially confirmed in the study.
DOI: 10.17632/s6rhszswpg
title: Courage and unethical pro-organizational behavior in a public organization

description: The study examines the relationship between organizational identity and UPB and the moderating role of courage in this relationship.