cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12240608.v1
title: Data Citation 2.docx

description: <i>Pennisetum sinese</i> is widely used in bioenergy industry and animal husbandry via an aerobic fermentation process. At present, most of the scientists have focused on a specific variety, while there are great differences in chemical characteristics among different varieties, which can affect the fermentation quality. However, the effects of silage bacteriome on different varieties of <i>P. </i><i>sinese</i><i> </i>still largely unexplored. In the present study, we described the sequencing data of 16S rRNA gene (V3-V4 region) of silage microbiome from 12 varieties of <i>P. </i><i>sinese</i><i> </i>(36 samples) using the Illumina HiSeq 2500 (PE250) platform. A total of 2,677,149 raw reads with an average of 71,424 sequences per sample were obtained. The top 10 genera with highest relative abundance accounted for 71.00% of total bacterial sequences. Moreover, we observed 13,816 overall operational taxonomic units (383 per sample) based on nucleotide sequence identity of 97% between reads. The initial data analysis and overview were supplied. The shared data could be applied to assess other silage microorganisms in order to improve the fermentation quality.
DOI: 10.6084/m9.figshare.12240584.v1
title: Closed-Form Multi-Factor Copula Models with Observation-Driven Dynamic Factor Loadings

description: We develop new multi-factor dynamic copula models with time-varying factor loadings and observation-driven dynamics. The new models are highly flexible, scalable to high dimensions, and ensure positivity of covariance and correlation matrices. A closed-form likelihood expression allows for straightforward parameter estimation and likelihood inference. We apply the new model to a large panel of 100 U.S. stocks over the period 2001–2014. The proposed multi-factor structure is much better than existing (single-factor) models at describing stock return dependence dynamics in high-dimensions. The new factor models also improve one-step-ahead copula density forecasts and global minimum variance portfolio performance. Finally, we investigate different mechanisms to allocate firms into groups and find that a simple industry classification outperforms alternatives based on observable risk factors, such as size, value or momentum.
DOI: 10.6084/m9.figshare.12240584.v3
title: Closed-Form Multi-Factor Copula Models With Observation-Driven Dynamic Factor Loadings

description: We develop new multi-factor dynamic copula models with time-varying factor loadings and observation-driven dynamics. The new models are highly flexible, scalable to high dimensions, and ensure positivity of covariance and correlation matrices. A closed-form likelihood expression allows for straightforward parameter estimation and likelihood inference. We apply the new model to a large panel of 100 U.S. stocks over the period 2001–2014. The proposed multi-factor structure is much better than existing (single-factor) models at describing stock return dependence dynamics in high-dimensions. The new factor models also improve one-step-ahead copula density forecasts and global minimum variance portfolio performance. Finally, we investigate different mechanisms to allocate firms into groups and find that a simple industry classification outperforms alternatives based on observable risk factors, such as size, value, or momentum.
DOI: 10.11583/dtu.12240536
title: TopBridge: STL files

description: STL files of topology optimization output, conventional design and the interpreted design <br>
DOI: 10.6084/m9.figshare.12240524
title: Signs of altered psychomotor capacity and use of alcohol and other drugs among nightclub patrons who drive in the city of São Paulo, Brazil

description: <b>Objectives:</b> To investigate the occurrence of signs of altered psychomotor capacity (SAPC) associated with the violation of the dry law at the exits of nightclubs in the city of São Paulo, Brazil. <b>Methods:</b> Data from drivers participating in the <i>Balada com Ciência</i> project were used. Alcohol dosages were measured with breathalyzer test. The use of other drugs was obtained by interviewees’ self-report. SAPC (speech, walking, glazed eyes, and alcohol odor) were verified by the interviewers at the time of the interview and categorized as “no sign” or “at least one sign”. All measurements were evaluated at the exit of the nightclubs. The population description considered the sample weighting. Logistic regression analysis evaluated the association between the occurrence of SAPC, alcohol and other drugs use, controlling for sociodemographic variables. <b>Results:</b> At nightclubs, the SAPC among drivers are about 8 times higher when the breath alcohol concentration is above 0.05 mg/L if compared with those who did not drink alcohol, and about 30 times higher when the alcohol concentration was ≥ 0.34 mg/L in exhaled air. This finding is not generally verified in the literature for those who report the use of drugs inside nightclubs, which is interesting, since 20.4% of the interviewed population reported using drugs in the places surveyed. <b>Conclusion:</b> This study suggests the potential of using the Perham (2007) physical test for alcohol intoxication in sobriety checkpoints at the exit of nightclubs. However, the verification of these signs is not enough for the identification of drug use by drivers.
DOI: 10.6084/m9.figshare.12240584.v2
title: Closed-Form Multi-Factor Copula Models with Observation-Driven Dynamic Factor Loadings

description: We develop new multi-factor dynamic copula models with time-varying factor loadings and observation-driven dynamics. The new models are highly flexible, scalable to high dimensions, and ensure positivity of covariance and correlation matrices. A closed-form likelihood expression allows for straightforward parameter estimation and likelihood inference. We apply the new model to a large panel of 100 U.S. stocks over the period 2001–2014. The proposed multi-factor structure is much better than existing (single-factor) models at describing stock return dependence dynamics in high-dimensions. The new factor models also improve one-step-ahead copula density forecasts and global minimum variance portfolio performance. Finally, we investigate different mechanisms to allocate firms into groups and find that a simple industry classification outperforms alternatives based on observable risk factors, such as size, value or momentum.
DOI: 10.11583/dtu.12240485
title: TopBridge: Abaqus Files

description: Abaqus inpute deck, STL's of optimized designs and interpreted results
DOI: 10.6084/m9.figshare.12240371
title: mohmd datasheet 040520.xlsx

description: Mohammadi datasheet- rawdata
DOI: 10.6084/m9.figshare.12240410
title: Xxxx

description: XXXXXXXXXX<br>
DOI: 10.6084/m9.figshare.12240524.v1
title: Signs of altered psychomotor capacity and use of alcohol and other drugs among nightclub patrons who drive in the city of São Paulo, Brazil

description: <b>Objectives:</b> To investigate the occurrence of signs of altered psychomotor capacity (SAPC) associated with the violation of the dry law at the exits of nightclubs in the city of São Paulo, Brazil. <b>Methods:</b> Data from drivers participating in the <i>Balada com Ciência</i> project were used. Alcohol dosages were measured with breathalyzer test. The use of other drugs was obtained by interviewees’ self-report. SAPC (speech, walking, glazed eyes, and alcohol odor) were verified by the interviewers at the time of the interview and categorized as “no sign” or “at least one sign”. All measurements were evaluated at the exit of the nightclubs. The population description considered the sample weighting. Logistic regression analysis evaluated the association between the occurrence of SAPC, alcohol and other drugs use, controlling for sociodemographic variables. <b>Results:</b> At nightclubs, the SAPC among drivers are about 8 times higher when the breath alcohol concentration is above 0.05 mg/L if compared with those who did not drink alcohol, and about 30 times higher when the alcohol concentration was ≥ 0.34 mg/L in exhaled air. This finding is not generally verified in the literature for those who report the use of drugs inside nightclubs, which is interesting, since 20.4% of the interviewed population reported using drugs in the places surveyed. <b>Conclusion:</b> This study suggests the potential of using the Perham (2007) physical test for alcohol intoxication in sobriety checkpoints at the exit of nightclubs. However, the verification of these signs is not enough for the identification of drug use by drivers.
DOI: 10.6084/m9.figshare.12240371.v1
title: mohmd datasheet 040520.xlsx

description: Mohammadi datasheet- rawdata
DOI: 10.6084/m9.figshare.12240410.v2
title: Xxxx

description: XXXXXXXXXX<br>
DOI: 10.11583/dtu.12240260.v1
title: Grid Frequency Measurements of the Nordic Power System during 2018.

description: The grid frequency is measured in Zealand, Denmark (DK-2), as a part of the Nordic power system (ENTSOE RG-N).<br><br>336.4 days are measured with the DEIF MTR-311.7 days are measured with the Schneider PM80016,9 days are not measured.<br>The MTR-3 and PM800 both has an accuracy of 10 mHz<br> There is one collumn with the UNIX timestamp and one collumn with the frequency measurement.<br>The dataset has a samplerate of 1 s, and missing samples are replaced with NaN so there are 24*3600*365=31,536,000 rows in the set.<br>
DOI: 10.6084/m9.figshare.12240290
title: Metadata record for: HISTOBREAST, a collection of brightfield microscopy images of Haematoxylin and Eosin stained breast tissue

description: This dataset contains key characteristics about the data described in the Data Descriptor HISTOBREAST, a collection of brightfield microscopy images of Haematoxylin and Eosin stained breast tissue. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12240224
title: 情感词典

description: 选取大连理工大学的情感词汇库作为基本情感词典，以百度文库中的弹幕情感词典作为补充，去除其中能表达情绪但无法表达用户对有意义的事物感知的词，并根据情感词汇库标记规则添加表达多样性感知的部分情感词，得到情感词共3059 个。
DOI: 10.6084/m9.figshare.12240233
title: 程度副词与否定词词典

description: 收集常用程度副词和否定词形成的词典。
DOI: 10.6084/m9.figshare.12240290.v1
title: Metadata record for: HISTOBREAST, a collection of brightfield microscopy images of Haematoxylin and Eosin stained breast tissue

description: This dataset contains key characteristics about the data described in the Data Descriptor HISTOBREAST, a collection of brightfield microscopy images of Haematoxylin and Eosin stained breast tissue. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12240218
title: test

description: test
DOI: 10.6084/m9.figshare.12240224.v1
title: 情感词典

description: 选取大连理工大学的情感词汇库作为基本情感词典，以百度文库中的弹幕情感词典作为补充，去除其中能表达情绪但无法表达用户对有意义的事物感知的词，并根据情感词汇库标记规则添加表达多样性感知的部分情感词，得到情感词共3059 个。
DOI: 10.6084/m9.figshare.12240194
title: 筛选词典

description: 使用哈尔滨工业大学LTP 包对网络隐私争议事件的微博评论数据进行依存句法分析，利用依存关系提取出与涉及相关主体与评价相关的词，共筛选出309 个关键词，形成筛选词典。
DOI: 10.6084/m9.figshare.12240218.v2
title: test

description: test
DOI: 10.6084/m9.figshare.12240218.v1
title: test

description: test
DOI: 10.6084/m9.figshare.12240194.v2
title: 筛选词典

description: 使用哈尔滨工业大学LTP 包对网络隐私争议事件的微博评论数据进行依存句法分析，利用依存关系提取出与涉及相关主体与评价相关的词，共筛选出309 个关键词，形成筛选词典。
DOI: 10.6084/m9.figshare.12240194.v1
title: ref.txt

description: 使用哈尔滨工业大学LTP 包对网络隐私争议事件的微博评论数据进行依存句法分析，利用依存关系提取出与涉及相关主体与评价相关的词，共筛选出309 个关键词，形成筛选词典。
DOI: 10.6084/m9.figshare.12238118
title: Age-specific (5-year age bands) and sex-specific estimates of prevalence for each underlying condition

description: Age- and sex-specific excess mortality estimates with number of underlying conditions to accompany paper: "Estimating excess 1-year mortality associated with the COVID-19 pandemic according to underlying conditions and age: a population-based cohort study" by A. Banerjee et al. https://www.medrxiv.org/content/10.1101/2020.03.22.20040287v1<br><br><br>
DOI: 10.6084/m9.figshare.12238118.v1
title: Age-specific (5-year age bands) and sex-specific estimates of prevalence for each underlying condition

description: Age- and sex-specific excess mortality estimates with number of underlying conditions to accompany paper: "Estimating excess 1-year mortality associated with the COVID-19 pandemic according to underlying conditions and age: a population-based cohort study" by A. Banerjee et al. https://www.medrxiv.org/content/10.1101/2020.03.22.20040287v1<br><br><br>
DOI: 10.6084/m9.figshare.12238049
title: ASV table containing counts and taxonomic identity of all detected ASVs in each sample.

description: This table contains ASV counts and taxonomic identity of all detected ASVs in each sample used in the data descriptor "Soil bacterial community structures in relation to different oil palm management practices". In addition to the taxonomy, the tax id, length of fragment, query percentage identity, query coverage and e-value are shown.
DOI: 10.6084/m9.figshare.12238031
title: Sequence statistic regarding quality-filtering of obtained sequences.

description: This table contains sequence statistics regarding quality-filtering of 16S rRNA gene amplicon sequences used in the data descriptor "Soil bacterial community structures in relation to different oil palm management practices".
DOI: 10.6084/m9.figshare.12238010
title: Table S1. U–Pb isotopic data. Patterns of Silurian deformation and magmatism during sinistral oblique convergence, northern Scottish Caledonides.

description: Table S1. U–Pb isotopic data.
DOI: 10.6084/m9.figshare.12238010.v1
title: Table S1. U–Pb isotopic data. Patterns of Silurian deformation and magmatism during sinistral oblique convergence, northern Scottish Caledonides.

description: Table S1. U–Pb isotopic data.
DOI: 10.6084/m9.figshare.12237707
title: Metadata, diversity and abiotic measurements of each sample.

description: This table contains metadata, diversity and abiotic measurements of all samples used in the data descriptor "Soil bacterial community structures in relation to different oil palm management practices". <br>
DOI: 10.6084/m9.figshare.12237701
title: S1: Major and trace elements. Carboniferous to Early Triassic magmatism and accretion in Alxa (NW China): Implications for accretionary orogenesis of the southern Altaids

description: Supplementary Table S1: Major and trace elements
DOI: 10.6084/m9.figshare.12237707.v1
title: Metadata, diversity and abiotic measurements of each sample.

description: This table contains metadata, diversity and abiotic measurements of all samples used in the data descriptor "Soil bacterial community structures in relation to different oil palm management practices". <br>
DOI: 10.6084/m9.figshare.12237698
title: S2: Zircon U–Pb data. Carboniferous to Early Triassic magmatism and accretion in Alxa (NW China): Implications for accretionary orogenesis of the southern Altaids

description: Supplementary Table S2: Zircon U–Pb data
DOI: 10.6084/m9.figshare.12237698.v1
title: S2: Zircon U–Pb data. Carboniferous to Early Triassic magmatism and accretion in Alxa (NW China): Implications for accretionary orogenesis of the southern Altaids

description: Supplementary Table S2: Zircon U–Pb data
DOI: 10.6084/m9.figshare.12237701.v1
title: S1: Major and trace elements. Carboniferous to Early Triassic magmatism and accretion in Alxa (NW China): Implications for accretionary orogenesis of the southern Altaids

description: Supplementary Table S1: Major and trace elements
DOI: 10.6084/m9.figshare.12237596
title: R codes and datasets we used in the paper

description: This zipped file contains the R codes and datasets used in the paper. There are 8 figures, 2 tables and 17 supplements in the zipped file.
DOI: 10.6084/m9.figshare.12237596.v1
title: R codes and datasets we used in the paper

description: This zipped file contains the R codes and dataset used in the paper.
DOI: 10.6084/m9.figshare.12237482
title: Impact of 2019–2020 mega-fires on Australian fauna habitat

description: Fire impacted species during 2019-2020 bushfires
DOI: 10.6084/m9.figshare.12237488
title: Impact of 2019–2020 mega-fires on Australian fauna habitat

description: This r code creates figure 2 from MS.
DOI: 10.6084/m9.figshare.12237491.v1
title: Gymnocypris namensis Full-length Transcriptome

description: <b>Full-length transcript sequencing accelerates the transcriptome research of </b><i><b>Gymnocypris namensis</b></i><b>, an iconic fish of the Tibetan Plateau.</b><b></b>
DOI: 10.6084/m9.figshare.12237482.v2
title: Impact of 2019–2020 mega-fires on Australian fauna habitat

description: Fire impacted species during 2019-2020 bushfires
DOI: 10.6084/m9.figshare.12237473
title: Peritubular dentin, a highly mineralized, non-collagenous, component of dentin: isolation and capture by laser microdissection

description: We demonstrate the capability and technique to perform microdissection and isolation of select regions of untreated, mineralized dentin using laser capture. Dentin is a complex, non-homogeneous tissue comprised of a mineralized collagenous matrix (intertubular dentin [ITD]), odontoblastic processes (ODPs), a void space (tubules) that forms within the ITD left behind by the retraction of ODPs during dentin maturation, and a highly mineralized non-collagenous component that exists at the interface between the tubules and ITD known as peritubular dentin (PTD). PTD forms as the dentin matures. The ODPs retract toward the direction of the pulp; leaving very little PTD at either the DEJ or near the pulp. Statistical analysis of thin cross-sections of coronal bovine dentin imaged by light microscopy reveal that the area occupied by PTD &gt;50%. To examine the nature of PTD and its relation to both the tubules and ITD, we devised a series of steps to carefully prepare sections of coronal bovine dentin so that areas of the dentin tissue could be cut and isolated for further analysis. We demonstrate that it is possible to selectively isolate targeted regions of dentin for analysis and that high resolution analysis of such sections can be performed using electron microscopy. Results show that the mineralized PTD has a different texture than mineralized ITD and that there is a distinct boundary between the PTD and the ITD. Selective isolation of mineralized tissue components for further analytical study opens the door for the investigation of similar enigmatic mineralized structures.
DOI: 10.6084/m9.figshare.12237482.v1
title: Impact of 2019–2020 mega-fires on Australian fauna habitat

description: Fire impacted species during 2019-2020 bushfires
DOI: 10.6084/m9.figshare.12237488.v1
title: Impact of 2019–2020 mega-fires on Australian fauna habitat

description: This r code creates figure 2 from MS.
DOI: 10.6084/m9.figshare.12237473.v1
title: Peritubular dentin, a highly mineralized, non-collagenous, component of dentin: isolation and capture by laser microdissection

description: We demonstrate the capability and technique to perform microdissection and isolation of select regions of untreated, mineralized dentin using laser capture. Dentin is a complex, non-homogeneous tissue comprised of a mineralized collagenous matrix (intertubular dentin [ITD]), odontoblastic processes (ODPs), a void space (tubules) that forms within the ITD left behind by the retraction of ODPs during dentin maturation, and a highly mineralized non-collagenous component that exists at the interface between the tubules and ITD known as peritubular dentin (PTD). PTD forms as the dentin matures. The ODPs retract toward the direction of the pulp; leaving very little PTD at either the DEJ or near the pulp. Statistical analysis of thin cross-sections of coronal bovine dentin imaged by light microscopy reveal that the area occupied by PTD &gt;50%. To examine the nature of PTD and its relation to both the tubules and ITD, we devised a series of steps to carefully prepare sections of coronal bovine dentin so that areas of the dentin tissue could be cut and isolated for further analysis. We demonstrate that it is possible to selectively isolate targeted regions of dentin for analysis and that high resolution analysis of such sections can be performed using electron microscopy. Results show that the mineralized PTD has a different texture than mineralized ITD and that there is a distinct boundary between the PTD and the ITD. Selective isolation of mineralized tissue components for further analytical study opens the door for the investigation of similar enigmatic mineralized structures.
DOI: 10.6084/m9.figshare.12237488.v3
title: Impact of 2019–2020 mega-fires on Australian fauna habitat

description: This r code creates figure 2 from MS.
DOI: 10.6084/m9.figshare.12237488.v2
title: Impact of 2019–2020 mega-fires on Australian fauna habitat

description: This r code creates figure 2 from MS.
DOI: 10.6084/m9.figshare.12237458
title: Calcite orientations and composition ranges within teeth across Echinoidea

description: Sea urchin’s teeth from four families of order Echinoida and from orders Temnopleuroida, Arbacioida and Cidaroida were studied with synchrotron X-ray diffraction. The high and very high Mg calcite phases of the teeth, i.e. the first and second stage mineral constituents, respectively, have the same crystallographic orientations. The co-orientation of first and second stage mineral, which the authors attribute to epitaxy, extends across the phylogenic width of the extant regular sea urchins and demonstrates that this is a primitive character of this group. The range of compositions Δ<i>x</i> for the two phases of Ca<sub>1-</sub> <i><sub>x</sub></i>Mg<i><sub>x</sub></i>CO<sub>3</sub> is about 0.20 or greater and is consistent with a common biomineralization process.
DOI: 10.6084/m9.figshare.12237458.v1
title: Calcite orientations and composition ranges within teeth across Echinoidea

description: Sea urchin’s teeth from four families of order Echinoida and from orders Temnopleuroida, Arbacioida and Cidaroida were studied with synchrotron X-ray diffraction. The high and very high Mg calcite phases of the teeth, i.e. the first and second stage mineral constituents, respectively, have the same crystallographic orientations. The co-orientation of first and second stage mineral, which the authors attribute to epitaxy, extends across the phylogenic width of the extant regular sea urchins and demonstrates that this is a primitive character of this group. The range of compositions Δ<i>x</i> for the two phases of Ca<sub>1-</sub> <i><sub>x</sub></i>Mg<i><sub>x</sub></i>CO<sub>3</sub> is about 0.20 or greater and is consistent with a common biomineralization process.
DOI: 10.6084/m9.figshare.12237392
title: Supplementary Tables and Figures from A natural catastrophic turnover event: individual sociality matters despite community resilience in wild house mice

description: Additional figures and tables
DOI: 10.6084/m9.figshare.12237392.v1
title: Supplementary Tables and Figures from A natural catastrophic turnover event: individual sociality matters despite community resilience in wild house mice

description: Additional figures and tables