cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6025127
title: Data on fish activity from Anemone bleaching increases the metabolic demands of symbiont anemonefish

description: Increased ocean temperatures are causing mass bleaching of anemones and corals in the tropics worldwide. While such heat-induced loss of algal symbionts (zooxanthellae) directly affects anemones and corals physiologically, this damage may also cascade on to other animal symbionts. Metabolic rate is an integrative physiological trait shown to relate to various aspects of organismal performance, behaviour and locomotor capacity, and also shows plasticity during exposure to acute and chronic stressors. As climate warming is expected to affect the physiology, behaviour and life-history of animals, including ectotherms such as fish, we measured if residing in bleached versus unbleached sea anemones (<i>Heteractis magnifica</i>) affected the standard (i.e. baseline) metabolic rate and behaviour (activity) of juvenile orange-fin anemonefish (<i>Amphiprion chrysopterus</i>)<i>.</i> Metabolic rate was estimated from rates of oxygen uptake (Ṁ<sub>O<sub>2</sub></sub>) and the standard metabolic rate (Ṁ<sub>O<sub>2.min</sub></sub>) of anemonefish from bleached anemones was significantly higher by 8.2% compared with that of fish residing in unbleached anemones, possibly due to increased stress levels. Activity levels did not differ between fish from bleached and unbleached anemones. As Ṁ<sub>O<sub>2.min</sub></sub> reflects the minimum cost of living, the increased metabolic demands provide a likely explanation for the negative impacts of bleaching on important anemonefish life-history and fitness traits observed previously (e.g. reduced spawning frequency and lower fecundity).
DOI: 10.6084/m9.figshare.6025127.v1
title: Data on fish activity from Anemone bleaching increases the metabolic demands of symbiont anemonefish

description: Increased ocean temperatures are causing mass bleaching of anemones and corals in the tropics worldwide. While such heat-induced loss of algal symbionts (zooxanthellae) directly affects anemones and corals physiologically, this damage may also cascade on to other animal symbionts. Metabolic rate is an integrative physiological trait shown to relate to various aspects of organismal performance, behaviour and locomotor capacity, and also shows plasticity during exposure to acute and chronic stressors. As climate warming is expected to affect the physiology, behaviour and life-history of animals, including ectotherms such as fish, we measured if residing in bleached versus unbleached sea anemones (<i>Heteractis magnifica</i>) affected the standard (i.e. baseline) metabolic rate and behaviour (activity) of juvenile orange-fin anemonefish (<i>Amphiprion chrysopterus</i>)<i>.</i> Metabolic rate was estimated from rates of oxygen uptake (Ṁ<sub>O<sub>2</sub></sub>) and the standard metabolic rate (Ṁ<sub>O<sub>2.min</sub></sub>) of anemonefish from bleached anemones was significantly higher by 8.2% compared with that of fish residing in unbleached anemones, possibly due to increased stress levels. Activity levels did not differ between fish from bleached and unbleached anemones. As Ṁ<sub>O<sub>2.min</sub></sub> reflects the minimum cost of living, the increased metabolic demands provide a likely explanation for the negative impacts of bleaching on important anemonefish life-history and fitness traits observed previously (e.g. reduced spawning frequency and lower fecundity).
DOI: 10.6084/m9.figshare.6025124
title: Data on fish metabolic rate from Anemone bleaching increases the metabolic demands of symbiont anemonefish

description: Increased ocean temperatures are causing mass bleaching of anemones and corals in the tropics worldwide. While such heat-induced loss of algal symbionts (zooxanthellae) directly affects anemones and corals physiologically, this damage may also cascade on to other animal symbionts. Metabolic rate is an integrative physiological trait shown to relate to various aspects of organismal performance, behaviour and locomotor capacity, and also shows plasticity during exposure to acute and chronic stressors. As climate warming is expected to affect the physiology, behaviour and life-history of animals, including ectotherms such as fish, we measured if residing in bleached versus unbleached sea anemones (<i>Heteractis magnifica</i>) affected the standard (i.e. baseline) metabolic rate and behaviour (activity) of juvenile orange-fin anemonefish (<i>Amphiprion chrysopterus</i>)<i>.</i> Metabolic rate was estimated from rates of oxygen uptake (Ṁ<sub>O<sub>2</sub></sub>) and the standard metabolic rate (Ṁ<sub>O<sub>2.min</sub></sub>) of anemonefish from bleached anemones was significantly higher by 8.2% compared with that of fish residing in unbleached anemones, possibly due to increased stress levels. Activity levels did not differ between fish from bleached and unbleached anemones. As Ṁ<sub>O<sub>2.min</sub></sub> reflects the minimum cost of living, the increased metabolic demands provide a likely explanation for the negative impacts of bleaching on important anemonefish life-history and fitness traits observed previously (e.g. reduced spawning frequency and lower fecundity).
DOI: 10.6084/m9.figshare.6025124.v1
title: Data on fish metabolic rate from Anemone bleaching increases the metabolic demands of symbiont anemonefish

description: Increased ocean temperatures are causing mass bleaching of anemones and corals in the tropics worldwide. While such heat-induced loss of algal symbionts (zooxanthellae) directly affects anemones and corals physiologically, this damage may also cascade on to other animal symbionts. Metabolic rate is an integrative physiological trait shown to relate to various aspects of organismal performance, behaviour and locomotor capacity, and also shows plasticity during exposure to acute and chronic stressors. As climate warming is expected to affect the physiology, behaviour and life-history of animals, including ectotherms such as fish, we measured if residing in bleached versus unbleached sea anemones (<i>Heteractis magnifica</i>) affected the standard (i.e. baseline) metabolic rate and behaviour (activity) of juvenile orange-fin anemonefish (<i>Amphiprion chrysopterus</i>)<i>.</i> Metabolic rate was estimated from rates of oxygen uptake (Ṁ<sub>O<sub>2</sub></sub>) and the standard metabolic rate (Ṁ<sub>O<sub>2.min</sub></sub>) of anemonefish from bleached anemones was significantly higher by 8.2% compared with that of fish residing in unbleached anemones, possibly due to increased stress levels. Activity levels did not differ between fish from bleached and unbleached anemones. As Ṁ<sub>O<sub>2.min</sub></sub> reflects the minimum cost of living, the increased metabolic demands provide a likely explanation for the negative impacts of bleaching on important anemonefish life-history and fitness traits observed previously (e.g. reduced spawning frequency and lower fecundity).
DOI: 10.6084/m9.figshare.6025115
title: ESM - Data from Are monkeys intuitive Aristotelians? Associations between target size and vertical target position in long-tailed macaques

description: This file contains the datasets of both studies
DOI: 10.6084/m9.figshare.6025106
title: Levels of C-reactive protein, creatine kinase-muscle, and aldolase A are suitable biomarkers for detecting risk factors for osteoarthritic disorders: A novel diagnostic protocol

description: The present study deals with the evaluation of the levels of biochemical markers such as CRP, CK-MM, and AldoA and determine their correlations with risk factors for OADs. Baseline data from 297 patients with OADs and 315 participants without OADs aged 40 to 80 years old were collected in this cross-sectional study.
DOI: 10.6084/m9.figshare.6025106.v1
title: Levels of C-reactive protein, creatine kinase-muscle, and aldolase A are suitable biomarkers for detecting risk factors for osteoarthritic disorders: A novel diagnostic protocol

description: The present study deals with the evaluation of the levels of biochemical markers such as CRP, CK-MM, and AldoA and determine their correlations with risk factors for OADs. Baseline data from 297 patients with OADs and 315 participants without OADs aged 40 to 80 years old were collected in this cross-sectional study.
DOI: 10.21227/qm62-pc56
title: DESIGN AND ANALYSIS OF FILTENNA FOR Ku-BAND APPLICATION

description: Filtenna or filtering antenna is a term used to represent a structure which has filtering as well as radiating function on same substrate. Because of this, the component size can be reduced and noise performance can be increased. The filtenna is designed to operate at 15GHz for Ku-band application. The measured and simulated return loss of filtenna is less than -15dB and the measured and simulated bandwidth is 785MHz and 1.125GHz respectively.
DOI: 10.5281/zenodo.4007941
title: Cat Vocalizations

description: <strong>Abstract</strong> This dataset contains meows emitted by cats in different contexts. Specifically, cats belonging to 2 breeds (Maine Coon and European Shorthair) have been repeatedly exposed to three different stimuli that were expected to induce the emission of meows: <em>Brushing</em> - Cats were brushed by their owners in their home environment for a maximum of 5 minutes; <em>Isolation in an unfamiliar environment</em> - Cats were transferred by their owners into an unfamiliar environment (e.g., a room in a different apartment or an office). Distance was minimized and the usual transportation routine was adopted so as to avoid discomfort to animals. The journey lasted less than 30 minutes and cats were allowed 30 minutes with their owners to recover from transportation, before being isolated in the unfamiliar environment, where they stayed alone for maximum 5 minutes; <em>Waiting for food</em> - The owner started the routine operations that preceded food delivery in the usual environment the cat was familiar with. Food was given at most 5 minutes after the beginning of the experiment. The dataset has been produced and employed in the context of an interdepartmental project of the University of Milan (for further information, please refer to this doi). The content of the dataset has been described in detail in a scientific work currently under review; the reference will be provided as soon as the paper is published. <strong>Naming conventions for files</strong> The pattern C_NNNNN_BB_SS_OOOOO_RXX is exploded as follows: C = emission context (values: B = brushing; F = waiting for food; I: isolation in an unfamiliar environment); NNNNN = cat’s unique ID; BB = breed (values: MC = Maine Coon; EU: European Shorthair); SS = sex (values: FI = female, intact; FN: female, neutered; MI: male, intact; MN: male, neutered); OOOOO = cat owner’s unique ID; R = recording session (values: 1, 2 or 3) XX = vocalization counter (values: 01..99)
description: {"references": ["Ntalampiras, S., Ludovico, L.A., Presti, G., Prato Previde, E., Battini, M., Cannas, S., Palestrini, C., Mattiello, S.: Automatic Classification of Cat Vocalizations Emitted in Different Contexts. Animals, vol. 9(8), pp. 543.1\u2013543.14. MDPI (2019). ISSN: 2076-2615."]}
DOI: 10.6084/m9.figshare.6025040
title: Do Developers Update Third-Party Libraries in Mobile Apps? - Appendix

description: One of the most common strategies to develop new software is to take advantage of existing source code, which is available in comprehensive packages called third-party libraries. As for all software systems, even these libraries change to offer new functionalities and fix bugs or security issues. The way the changes are propagated has been studied by researchers, interested in understanding their impact on the non-functional attributes of the systems source code. While the research community mainly focused on the change propagation phenomenon in the context of traditional applications, only little is known regarding the mobile context. In this paper, we aim at bridging this gap by conducting an empirical study on the evolution history of 291 mobile apps, by investigating (i) whether mobile developers actually update third-party libraries, (ii) which are the categories of libraries with respect to the developers' proneness to update their apps, (iii) what are the common patterns followed by developers when updating a software library, and (iv) whether high- and low-rated apps present peculiar update patterns. The results of the study showed that mobile developers rarely update their apps with respect to the used libraries, and when they do, they mainly tend to update the libraries related to the Graphical User Interface, with the aim of keeping the mobile apps updated with the latest design tendencies. In some cases developers ignore updates because of a poor awareness of the benefits, or a too high cost/benefit ratio. Finally, high- and low-rated apps present strong differences.
DOI: 10.6084/m9.figshare.6025040.v1
title: Do Developers Update Third-Party Libraries in Mobile Apps? - Appendix

description: One of the most common strategies to develop new software is to take advantage of existing source code, which is available in comprehensive packages called third-party libraries. As for all software systems, even these libraries change to offer new functionalities and fix bugs or security issues. The way the changes are propagated has been studied by researchers, interested in understanding their impact on the non-functional attributes of the systems source code. While the research community mainly focused on the change propagation phenomenon in the context of traditional applications, only little is known regarding the mobile context. In this paper, we aim at bridging this gap by conducting an empirical study on the evolution history of 291 mobile apps, by investigating (i) whether mobile developers actually update third-party libraries, (ii) which are the categories of libraries with respect to the developers' proneness to update their apps, (iii) what are the common patterns followed by developers when updating a software library, and (iv) whether high- and low-rated apps present peculiar update patterns. The results of the study showed that mobile developers rarely update their apps with respect to the used libraries, and when they do, they mainly tend to update the libraries related to the Graphical User Interface, with the aim of keeping the mobile apps updated with the latest design tendencies. In some cases developers ignore updates because of a poor awareness of the benefits, or a too high cost/benefit ratio. Finally, high- and low-rated apps present strong differences.
DOI: 10.6084/m9.figshare.6024914
title: CIRCLE CSA Data

description: This document will include information on data gathered as part of a research to discover farmers' perception of climate change and capacity for climate smart agriculture.
DOI: 10.6084/m9.figshare.6024914.v1
title: CIRCLE CSA Data

description: This document will include information on data gathered as part of a research to discover farmers' perception of climate change and capacity for climate smart agriculture.
DOI: 10.6084/m9.figshare.6024890
title: Investigation on two human defensin dimers: structure prediction and refinement using a combined simulation strategy

description: Defensins are cationic cysteine-rich small molecules belonging to the innate immune system. Most defensins form dimers that can enhance their function. Thus, predicting their dimer structures, if unavailable, is important. In this project, a combined simulation strategy is applied to predict dimer structures of two defensins, human defensin type 2 (hBD-2) and human defensin type 5 (HD5), which includes predicting the initial dimer structure running implicit solvent replica-exchange (REX) simulations with a GBSW module, then running microsecond-long all-atom simulations with the CHARMM36 forcefield to refine the prediction. The combined simulations predicted the dimer structures in good agreement with crystal structures within simulation uncertainty. Microsecond-long refinement on the crystal structures of hBD-2 and HD5 dimers shows that CHARMM36 forcefield could contribute a structural deviation of 1.0–3.0 Å from their crystal structures. Comparing the RMSD, RMSF, radius of gyration, accessible surface area (ASA), number of hydrogen bonds (H-bonds) and residue distance map for simulations starting from the REX initiated structure and the crystal structure, consistent agreements were reached for both dimers. However, hBD-2 dimer has a larger hydrophobic ASA, while HD5 has a larger hydrophilic ASA; HD5 forms 45 H-bonds on the binding interface while 12 for hBD-2 dimer.
DOI: 10.6084/m9.figshare.6024890.v1
title: Investigation on two human defensin dimers: structure prediction and refinement using a combined simulation strategy

description: Defensins are cationic cysteine-rich small molecules belonging to the innate immune system. Most defensins form dimers that can enhance their function. Thus, predicting their dimer structures, if unavailable, is important. In this project, a combined simulation strategy is applied to predict dimer structures of two defensins, human defensin type 2 (hBD-2) and human defensin type 5 (HD5), which includes predicting the initial dimer structure running implicit solvent replica-exchange (REX) simulations with a GBSW module, then running microsecond-long all-atom simulations with the CHARMM36 forcefield to refine the prediction. The combined simulations predicted the dimer structures in good agreement with crystal structures within simulation uncertainty. Microsecond-long refinement on the crystal structures of hBD-2 and HD5 dimers shows that CHARMM36 forcefield could contribute a structural deviation of 1.0–3.0 Å from their crystal structures. Comparing the RMSD, RMSF, radius of gyration, accessible surface area (ASA), number of hydrogen bonds (H-bonds) and residue distance map for simulations starting from the REX initiated structure and the crystal structure, consistent agreements were reached for both dimers. However, hBD-2 dimer has a larger hydrophobic ASA, while HD5 has a larger hydrophilic ASA; HD5 forms 45 H-bonds on the binding interface while 12 for hBD-2 dimer.
DOI: 10.6084/m9.figshare.6024845
title: MOESM5 of A multi-trait Bayesian method for mapping QTL and genomic prediction

description: Additional file 5: Table S4. This file contains highly significant SNPs (P
DOI: 10.6084/m9.figshare.6024845.v1
title: MOESM5 of A multi-trait Bayesian method for mapping QTL and genomic prediction

description: Additional file 5: Table S4. This file contains highly significant SNPs (P
DOI: 10.6084/m9.figshare.6024830
title: Additional file 2: of SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

description: Tables S1â S17. (XLSX 3050 kb)
DOI: 10.6084/m9.figshare.6024830.v1
title: Additional file 2: of SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

description: Tables S1â S17. (XLSX 3050 kb)
DOI: 10.6084/m9.figshare.6024818
title: MOESM6 of The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

description: Additional file 6: Table S6. Interproscan annotations of significant Proteins of Unknown Functions (PUFs) that contains signal peptide and obtained by binary substrates.
DOI: 10.6084/m9.figshare.6024818.v1
title: MOESM6 of The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

description: Additional file 6: Table S6. Interproscan annotations of significant Proteins of Unknown Functions (PUFs) that contains signal peptide and obtained by binary substrates.
DOI: 10.6084/m9.figshare.6024812
title: MOESM5 of The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

description: Additional file 5: Table S5. Significantly differentially abundant Proteins of Unknown Functions (PUFs) obtained by binary substrates comparison.
DOI: 10.6084/m9.figshare.6024812.v1
title: MOESM5 of The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

description: Additional file 5: Table S5. Significantly differentially abundant Proteins of Unknown Functions (PUFs) obtained by binary substrates comparison.
DOI: 10.6084/m9.figshare.6024794
title: MOESM4 of The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

description: Additional file 4: Table S4. Substrate level fold-change matrixes of significant proteins (p value &lt; 0.05 ANOVA).
DOI: 10.6084/m9.figshare.6024794.v1
title: MOESM4 of The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

description: Additional file 4: Table S4. Substrate level fold-change matrixes of significant proteins (p value &lt; 0.05 ANOVA).
DOI: 10.6084/m9.figshare.6024779
title: MOESM3 of The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

description: Additional file 3: Table S3. Significantly differentially abundant protein in pairiwise comparisons.
DOI: 10.6084/m9.figshare.6024779.v1
title: MOESM3 of The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

description: Additional file 3: Table S3. Significantly differentially abundant protein in pairiwise comparisons.
DOI: 10.6084/m9.figshare.6024758
title: MOESM2 of The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

description: Additional file 2: Table S2. Normalized matched ion intensity measurement using mass spectrometry.
DOI: 10.6084/m9.figshare.6024758.v1
title: MOESM2 of The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

description: Additional file 2: Table S2. Normalized matched ion intensity measurement using mass spectrometry.
DOI: 10.6084/m9.figshare.6024695
title: Data from Modelling cointegration and Granger causality network to detect long-term equilibrium and diffusion paths in the financial system

description: The stock prices time series
DOI: 10.6084/m9.figshare.6024695.v1
title: Data from Modelling cointegration and Granger causality network to detect long-term equilibrium and diffusion paths in the financial system

description: The stock prices time series
DOI: 10.6084/m9.figshare.6024470
title: raw envrionmental data.xlsx

description: raw envrionmental data<br>
DOI: 10.6084/m9.figshare.6024470.v1
title: raw envrionmental data.xlsx

description: raw envrionmental data<br>