cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5579128.v1
title: Daily Relative Humidity Data in Hawaii

description: Relative Humidity measurements from 105 independent climate stations in Hawaii from 1990 to 2014.
DOI: 10.6084/m9.figshare.14195345.v1
title: doaj article sample

description: library carpentry openrefine data
DOI: 10.6084/m9.figshare.16572974.v1
title: Supplementary Material for: Therapeutic Potential of Human Nasal Inferior Turbinate-Derived Stem Cells: Microarray Analysis of Multilineage Differentiation

description: <b><i>Introduction:</i></b> Human nasal inferior turbinate-derived stem cells (hNTSCs) are attractive sources of adult stem cells for medical application because they can be easily obtained and cultivated with a highly proliferative capacity. The ability of hNTSCs to differentiate into chondrocytes, osteocytes, and neural cells makes them potential replacement therapeutic candidates in intractable disease. Nevertheless, detailed expression pattern of genes associated with trilineage differentiation (osteogenesis, chondrogenesis, and neurogenesis) in hNTSCs has not been revealed yet. <b><i>Methods:</i></b> In this study, we aimed to evaluate gene expression patterns of various transcription factors and marker genes associated with a particular lineage (osteogenesis, chondrogenesis, and neurogenesis) of differentiation of hNTSCs by DNA microarrays. <b><i>Results:</i></b> In microarrays, 36 transcripts such as E2F transcription factor 1, activating transcription factor 5, and AKR1B10 were upregulated and 36 transcripts such as CA9, PPFIA4, HAS2, and COL4A4 were downregulated in osteogenically differentiated hNTSCs. In chondrogenically differentiated hNTSCs, 3 transcripts (NUDT14, CPA4, and heparin-binding epidermal growth factor-like growth factor) were upregulated and 82 transcripts such as PTGS1, CLEC2D, and TET1 were downregulated. In neurally differentiated hNTSCs, 61 transcripts such as insulin-like growth factor-binding protein-1, nerve growth factor receptor, FGF1, OLFML1, and EPGN were upregulated and 98 transcripts such as ACAN, RUNX2, and C21orf96 were downregulated. In gene ontology (GO) analysis, cell signal-related GO terms were highly expressed. By contrast, catalysis GO terms and GO terms related to oxidoreductase were overrepresented in chondrogenically differentiated hNTSCs and osteogenically differentiated hNTSCs, respectively. <b><i>Conclusion:</i></b> Considering overall results, hNTSCs-specific genetic information may promote further studies on intracellular mechanisms defining key features of these cells.
DOI: 10.6084/m9.figshare.22320904.v1
title: SPSS syntax

description: SPSS syntax
DOI: 10.6084/m9.figshare.25782330.v2
title: Synergistic effects of the next generation insecticide flupyradifurone with a fungal pathogen - Supplementary Material, Data and R-code

description: Data and R code for the manuscript "Synergistic effects of the next generation insecticide flupyradifurone with a fungal pathogen", which investigates the impacts of chronic exposure to flupyradifurone alone and in combination with the entomopathogenic fungus <i>Metarhizium brunneum </i>in a non-target arthropod: the ant <i>Lasius niger</i>.
DOI: 10.6084/m9.figshare.26076040.v1
title: Supplementary Material for: Endovascular Mechanical Thrombectomy for Ischemic Stroke Treatment in the setting of Aortic Dissection

description: Introduction: Acute ischemic stroke can occur in the setting of aortic dissection. Information concerning the utility of endovascular mechanical thrombectomy as an intervention for patients with aortic dissection who are experiencing an acute stroke due to large vessel occlusion is limited to a few case reports. Case series of patients presenting with this clinical situation are needed to further investigate the potential utility of this procedure when patients with acute ischemic stroke and aortic dissection are encountered.
Case presentation: We report a patient with a chronic Stanford type A aortic dissection with dissection extension into the left common carotid artery and left internal carotid artery who had a good clinical outcome following mechanical thrombectomy for a symptomatic middle cerebral artery occlusion. We also review other cases in which endovascular mechanical thrombectomy was conducted in patients with aortic dissection and acute ischemic stroke, and discuss the potential risks and benefits of carotid artery stenting in this clinical situation.
Conclusion: The rate of successful arterial recanalization in patients with aortic dissection, large vessel occlusion and acute ischemic stroke treated with mechanical thrombectomy is high. The intervention has been associated with good neurological outcomes and a low rate of procedure-related complications. Additional case series are needed to help discern if our observations are present in a broader array of patients in order to identify which patients are most likely to benefit from mechanical thrombectomy.
DOI: 10.6084/m9.figshare.28876079.v1
title: Regional Brain Structure Alterations in Diabetes but Not Prediabetes: the Shanghai Changfeng Study supplementary materials

description: Supplementary material
DOI: 10.6084/m9.figshare.3398515.v3
title: Input and output files for Prediction of pKa Values Using the PM6 Semiempirical Method

description: Input and output files for Prediction of pKa Values Using the PM6 Semiempirical Method<br>Data collected in following spreadsheets<br>PM6-D3H+/SMD(*)https://docs.google.com/spreadsheets/d/1y-QAnCalkXkvfEx7vOs0CUKsORjrGRmRLzO1bwWicRo/edit?usp=sharing<br>PM6/SMDhttps://docs.google.com/spreadsheets/d/1tfKv1_5YbZC3FV2poOZoMCKZFzSGWWwfckML2pd6P_k/edit?usp=sharing<br>PM6/COSMOhttps://docs.google.com/spreadsheets/d/1h4BdkN8jCBgdGyRv2rlbZSwLNPkl90dGaMkKXjMEDy4/edit?usp=sharing
DOI: 10.5522/04/11568759.v1
title: Internet of Things Discrete Choice Experiment Wearables data

description: The data are for a discrete choice experiment that examined the impact of security labels, device functionality and price on consumer decision making.This dataset is for internet connected wearables. <br>Article will be published in PlosOne.
DOI: 10.6084/m9.figshare.12563591.v1
title: CCLE Aneuploidy Data

description: Table of aneuploidy information from Cohen-Sharir et al., Selective vulnerability of aneuploid human cancer cells to inhibition of the spindle assembly checkpoint. https://doi.org/10.1101/2020.06.18.159038.<br>Arm-level CNA calls and aneuploidy scores calculated based on CCLE ABSOLUTE copy number profiles (Ghandi et al., Nature, 2019).<br>For a detailed description of the methods see Cohen-Sharir et al. https://doi.org/10.1101/2020.06.18.159038.<br>
DOI: 10.6084/m9.figshare.20517330.v3
title: Schork et al 2019 - iPSYCH cross-disorder GWAS summary statistics - PMID: 30692689

description: GWAS used for various analysis. See 00readMe for details.
DOI: 10.6084/m9.figshare.28883636.v1
title: T2T genome assembly in peanut

description: we selected two diploid progenitors and four representative allotetraploid peanuts to construct T2T genomes.
DOI: 10.6084/m9.figshare.27717603.v1
title: TAR-1：城市交通对象数据集设置

description: 我们首次发布了城市交通对象的，分为两部分：A 部分是在真实道路环境中使用红外传感相机获取在真实道路环境中的，B 部分是从俄罗斯新闻视频中提取的。 最初，我们在搜索交通事故数据集时的主要考虑是仅使用来自中国的数据集。然而，中国交通事故数据可能在关键特征区域包含马赛克，这可能会严重阻碍 TAR-DETR 的特征识别。因此，我们决定整合俄罗斯的交通事故数据。压缩文件包含 3000 张原始图像，以及 VOC 和 YOLO 格式的相应标签。
DOI: 10.6084/m9.figshare.3562902.v1
title: Appendix A. Description of a simulation model of the effects of multiple herbivores on selection on plant defensive structures, including supplementary figures.

description: Description of a simulation model of the effects of multiple herbivores on selection on plant defensive structures, including supplementary figures.
DOI: 10.6084/m9.figshare.6126866.v1
title: Pre-computed Functional Brain Networks for Healthy Controls

description: - the Correlation of Envelope - iPLV- PLV
DOI: 10.6084/m9.figshare.24287371.v2
title: Collective action dataset and do file

description: The nexus between gender and collective action participation
DOI: 10.17632/dj67wj2syj
title: Data for: Can People Accurately Estimate the Calories in Food Images? An Optimised Set of Low- and High-Calorie Images from the Food-pics Database

description: Average calorie estimations, average weight estimations, recognisability, liking, and healthiness ratings of 178 high and 182 low calorie foods from the Food-pics database (Blechert et. al, 2014). Rated by eight hundred and forty psychology undergraduate students studying in Australia (aged 16-60, 64% female).
DOI: 10.17632/pmdbs9tby8
title: Dataset for Arabic Word Sense Disambiguation

description: This dataset can be used for research in Arabic Word Sense Disambiguation.

This paper is a descriptor for the dataset to be cited when you use the data:
Kaddoura, Sanaa, and Reem Nassar. "A Comprehensive Dataset for Arabic Word Sense Disambiguation." Data in Brief (2024): 110591.
Paper Link: https://www.sciencedirect.com/science/article/pii/S2352340924005584

The data was analyzed in this article:
Kaddoura, Sanaa, and Reem Nassar. "EnhancedBERT: A Feature-rich Ensemble Model for Arabic Word Sense Disambiguation with Statistical Analysis and Optimized Data Collection." Journal of King Saud University-Computer and Information Sciences (2024): 101911.
Paper Link: https://www.sciencedirect.com/science/article/pii/S1319157823004652
DOI: 10.6084/m9.figshare.14072936.v1
title: Motion Data

description: This folder contains all of the cleaned motion data that was used for inverse kinematics and inverse dynamics in the study, "Weighted Baseball Training Affects Arm Speed without Increasing Elbow and Shoulder Joint Kinetics"<br>
DOI: 10.6084/m9.figshare.14274785.v1
title: Accurate prediction and genome-wide association analysis of digital intramuscular fat content in longissimus muscle of pigs

description: The genome-wide SNP and phenotypic datasets data for PFAI and MS.
DOI: 10.6084/m9.figshare.16844653.v1
title: Supplementary Material for: Development and External Validation of a Model for Predicting Sufficient Filter Lifespan in Anticoagulation-Free Continuous Renal Replacement Therapy Patients

description: <b><i>Background:</i></b> Anticoagulation-free continuous renal replacement therapy (CRRT) was recommended by the current clinical guideline for patients with increased bleeding risk and contraindications of citrate. Nevertheless, anticoagulation-free CRRT yielded heterogeneous filter lifespan. Furthermore, the specific cutoff values for traditional coagulation parameters to predict sufficient filter lifespan of anticoagulation-free CRRT have not yet been determined. The purpose of our present study was to develop and validate a model for predicting sufficient filter lifespan in anticoagulation-free CRRT patients. <b><i>Methods:</i></b> Patients who underwent anticoagulation-free CRRT in our center between June 2013 and June 2019 were retrospectively included. The primary outcome was sufficient filter lifespan (≥24 h). Thirty-seven predictors were included for modeling based on their clinical significance and previous reports. The final model was developed by using multivariable logistic regression analysis and was validated in a separate external cohort. <b><i>Results:</i></b> The development cohort included 170 patients. Sufficient filter lifespan was observed in 80 patients. Thirteen variables were independent predictors for sufficient filter lifespan by logistic regression: body temperature, mean arterial pressure, activated partial thromboplastin time, direct bilirubin, alkaline phosphatase, blood urea nitrogen, vasopressor use, body mass index, white blood cell, platelet count, D-dimer, uric acid, and pH. The area under the curve (AUC) of the stepwise model and internal validation model was 0.82 (95% confidence interval [CI] [0.76–0.88]) and 0.8 (95% CI [0.74–0.87]), respectively. The positive predictive value and the negative predictive value of the stepwise model were 0.77 and 0.79, respectively. The validation cohort included 44 eligible patients and the AUC of the external validation model was 0.82 (95% CI [0.69–0.96]). <b><i>Conclusions:</i></b> The use of a prediction model instead of an assessment based only on coagulation parameters could facilitate the identification of the patients with filter lifespan of ≥24 h when they accepted anticoagulation-free CRRT.
DOI: 10.6084/m9.figshare.21679628.v1
title: <i>Rauvolfia tetraphylla</i> chromosome-scale genome to complete the ajmaline biosynthetic pathway

description: Rauvolfia_tetraphylla_v2.0.transcripts (Predicted transcripts)<br>Rauvolfia_tetraphylla_v2.0.cds (Predicted CDS)<br>Rauvolfia_tetraphylla_v2.0.gff3 (Genome annotation file (GFF))<br>Rauvolfia_tetraphylla_v2.0.pep (Predicted proteins)<br>Rauvolfia_tetraphylla_genome_v2.0.fasta (Genome)<br>Rauvolfia_tetraphylla_v2.0_Trinotate.xls (Gene functional annotation)
DOI: 10.25405/data.ncl.28956770.v1
title: Numerical simulation data for quantum droplet formation in a Bose Einstein Condensate.

description: The datasets were used to produce the figures in the paper "Universal scaling law for quantum droplet formation" arXiv:2504.21641 (See README file). Paper abstract:Given the right set of circumstances, ultracold quantum gases are able to change character and condense into a liquid state of quantum droplets. The size distribution of the droplets is determined dynamically in the condensation process. A semi-quantitative argument is presented which suggests that, at zero temperature, a multiple droplet system has is a preferred scale $\propto v^{-d}$, with $d\approx 0.5$, where $v$ is the rate of change of parameters at the time of droplet formation. Numerical simulations of two dimensional systems strongly supporta power law, but with an exponent $d\in(0.3,0.4)$.
DOI: 10.6084/m9.figshare.19131413.v1
title: A closed Candidatus Odinarchaeum chromosome exposes Asgard archaeal viruses

description: Dataset including genome sequences (fasta nucleotide, fasta amino acid of predicted ORFs, and annotation files) and phylogenetic data (sequences, trimmed alignments, raw tree). For details, see Tamarit et al (2022) Nat Microbiol (In Press<br>Dataset file structure:├── mobile_element_genome_sequences│ ├── ME_ctg4.faa│ ├── ME_ctg4.fna│ ├── ME_ctg4.tsv│ ├── ME_ctg5.faa│ ├── ME_ctg5.fna│ └── ME_ctg5.tsv├── Odinarchaeum_genome_sequence│ ├── odin_ctg1.faa│ └── odin_ctg1.fna├── phylogenomic_analysis│ ├── Phylogenomic_classification_bins_GToTreeG0.2.aln│ └── Phylogenomic_classification_bins_GToTreeG0.2.nwk├── pPolB_analysis│ ├── pPolB_aln-trimmed.aln│ ├── pPolB_aln-trimmed.nwk│ └── pPolB.faa└── viruses_genome_sequences├── Huginnvirus_ctg6.faa├── Huginnvirus_ctg6.fna ├── Huginnvirus_ctg6.gbf ├── Huginnvirus_ctg6.tsv ├── ME_ctg9.faa ├── ME_ctg9.fna ├── ME_ctg9.tsv ├── ME_ctg.gbf ├── Muninnvirus_ctg2.faa ├── Muninnvirus_ctg2.fna ├── Muninnvirus_ctg2.gbf └── Muninnvirus_ctg2.tsv<br>5 directories, 25 files
DOI: 10.6084/m9.figshare.26379805.v1
title: muTOX-AL-main.zip

description: The source data and code for muTOX-AL
DOI: 10.6084/m9.figshare.929651_d7
title: Test-retest data, comprising multiple T1-weighted MRI brain volumes.

description: Data accompanying manuscript, "Reliability of Brain Volume Measurements: A Test-Retest Dataset"
DOI: 10.17632/3jgf74nsgd
title: Database of endemic and/or threatened Orthoptera species in the Natura 2000 sites of Greece.

description: Scientific context Greece hosts 378 Orthoptera species (35% of Europe), with 140 species to be endemic in Greece and 139 species to be endangered after IUCN criteria. One fourth of the Greek orthoptera fauna is endemic and endangered. The Greek biodiversity law 3937/31-3-2011 provides protection to all the above species as “species included in the national and international red-lists, or “endemic species” (Article 11: conservation of endemic biodiversity) Description The database presents the occurrence of 145 Orthoptera species in 186 terrestrial Natura 2000 sites of Greece. The selected species presented are: (a) threatened according to IUCN criteria European level: Critically Endangered-CR, Endangered-EN, Vulnerable-VU and Near Threatened-N, (b) endemic in Greece or (c) both threatened and endemic in Greece. The conservation status of the species is provided by the European Red List of Grasshoppers, Crickets, and Bush-crickets [1]. The species occurrence data are provided by the book “The Grasshoppers of Greece” [2] plus unpublished data from the contributors (Willemse, L., Kati, V. 2019, 2020). The database includes 1553 records of known localities of species occurrence. Significance, use, limitations The database can be used: As a reference database for Environmental Impact Assessment Studies and Special Ecological Studies in Natura 2000 sites. To promote grasshopper research, conservation, monitoring, and encourage citizen-science in Natura 2000 network. The database needs regular updating. While the species occurrence in Natura 2000 sites is considered reliable, the background map was of medium confidence: species occurrences were mapped after exact GPS coordinates or locality description (less accurate). References [1]. Hochkirch, A., et al. 2016. European Red List of Grasshoppers, Crickets, and Bush-crickets. Luxembourg: Publications Office of the European Union. 94 p. Available at: https://portals.iucn.org/library/sites/library/files/documents/RL-4-021.pdf . [2]. Willemse, L.P.M., Kleukers, R.M.J.C, Ode, B. (2018): The Grasshoppers of Greece. EIS Kenniscentrum Insecten & Naturalis Biodiversity Center, Leiden. 440p.
DOI: 10.25421/yorksj.22846268.v1
title: Data Set Fathers, Masculinity, Social Support and Depression Midwifery.sav

description: These data are from Samantha Short's first study for her doctoral thesis. This study was published in the journal Midwifery in 2023. It looks at fatherhood, masculinity, social support and depression symptomology with partner and child variables included. <br> <br>
DOI: 10.6084/m9.figshare.25272598.v2
title: Source Data

description: <b>A soft magnetoelastic sensor to decode levels of fatigue</b>
DOI: 10.6084/m9.figshare.3547536.v1
title: Supplement 1. R code for conducting statistical tests of stable isotope data.

description: File List Turner.et.al.ecology.source.R<br> Turner.et.al.ecology.example1.R<br> Turner.et.al.ecology.example2.R<br> Turner.et.al.ecology.example3.R Description These files include R codes for conducting analyses of stable isotope data found in this paper. The first file, Turner.et.al.ecology.source.R, describes functions for calculating dispersion statistics, group means for stable isotope values, conducting Generalized Procrustes Analysis, and computing trajectory analysis metrics. We also include R code (Turner.et.al.ecology.example1.R, Turner.et.al.ecology.example2.R, Turner.et.al.ecology.example3.R) for conducting hypothesis tests of stable isotope metrics described in this paper for three empirical examples (data from Vander Zanden et al. 2003 and reanalyzed in Schmidt et al. 2007).
DOI: 10.6084/m9.figshare.7928903.v1
title: gVCF_HG03886

description: 1000 Genomes gVCF mapped to hs37d5 for HG03886. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.20425215.v1
title: Effect of retaliatory killing on coalition size, tenure period and community attitude towards retaliation effect on lion population

description: Data on male lion coalition was obtained from a long-term studyof Tarangire Lion Project collected through lion monitoring from 2004 to 2018. A total of 46 coalition groups were obtained and mapped to assess whether there are located in retaliation risk areas or not. <br> Data on the survey of assessing the community awareness on the effect of retaliatory killing to lion population was collected through questionnaire survey. The survey was conduxted to the villages surrounding the protected areas and the villages were selecetd based on the record of lion killing collected ovr the past 14 years.
DOI: 10.6084/m9.figshare.25557462.v1
title: DCTPep, the data of cancer therapy peptides

description: With the discovery of the therapeutic activity of peptides, they have emerged as a promising class of anti-cancer agents due to their specific targeting, low toxicity, and potential for high selectivity. In particular, as peptide-drug conjugates enter clinical, the coupling of targeted peptides with traditional chemotherapy drugs or cytotoxic agents will become a new direction in cancer treatment. To facilitate the drug development of cancer therapy peptides, we have constructed DCTPep, a novel, open, and comprehensive database for cancer therapy peptides. In addition to traditional anticancer peptides (ACPs), the peptide library also includes peptides related to cancer therapy. These data were collected manually from published research articles, patents, and other protein or peptide databases. Data on drug library include clinically investigated and/or approved peptide drugs related to cancer therapy, which mainly come from the portal websites of drug regulatory authorities and organisations in different countries and regions. DCTPep has a total of 6214 entries, we believe that DCTPep will contribute to the design and screening of future cancer therapy peptides.
DOI: 10.6084/m9.figshare.26966164.v6
title: Potentiating cancer immunotherapies with modular albumin-hitchhiking nanobody–STING agonist conjugates

description: Potentiating cancer immunotherapies with modular albumin-hitchhiking nanobody–STING agonist conjugates datasets
DOI: 10.6084/m9.figshare.7093526.v1
title: Supplementary Material for: <b><i>In Silico</i></b> Identification and <b><i>in Vitro</i></b> Analysis of B and T-Cell Epitopes of the Black Turtle Bean (<b><i>Phaseolus Vulgaris L</i></b>.) Lectin

description: <b><i>Background/Aims:</i></b> The incidence of lectin allergic disease is increasing in recent decades, and definitive treatment is still lacking. Identification of B and T-cell epitopes of allergen will be useful in understanding the allergen antibody responses as well as aiding in the development of new diagnostics and therapy regimens for lectin poisoning. In the current study, we mainly addressed these questions. <b><i>Methods:</i></b> Three-dimensional structure of the lectin from black turtle bean (<i>Phaseolus vulgaris L.</i>) was modeled using the structural template of Phytohemagglutinin from <i>P. vulgaris</i> (PHA-E, PDB ID: 3wcs.1.A) with high identity. The B and T-cell epitopes were screened and identified by immunoinformatics and subsequently validated by ELISA, lymphocyte proliferation and cytokine profile analyses. <b><i>Results:</i></b> Seven potential B-cell epitopes (B1 to B7) were identified by sequence and structure based methods, while three T-cell epitopes (T1 to T3) were identified by the predictions of binding score and inhibitory concentration. The epitope peptides were synthesized. Significant IgE binding capability was found in B-cell epitopes (B2, B5, B6 and B7) and T2 (a cryptic B-cell epitope). T1 and T2 induced significant lymphoproliferation, and the release of IL-4 and IL-5 cytokine confirmed the validity of T-cell epitope prediction. Abundant hydrophobic amino acids were found in B-cell epitope and T-cell epitope regions by amino acid analysis. Positively charged amino acids, such as His residue, might be more favored for B-cell epitope. <b><i>Conclusion:</i></b> The present approach can be applied for the identification of epitopes in novel allergen proteins and thus for designing diagnostics and therapies in lectin allergy.
DOI: 10.17608/k6.auckland.28689461.v2
title: asTTle v4 Training Manuals and Guides

description: The PPT documents were the support systems offered to NZ teachers at the deployment of Version 4 of the Assessment Tools for Teaching and Learning (asTTle) system. The guides cover the installation of asTTle v4 in both single and multi-user environments, and designing and interpreting tests in asTTle. Guides also cover use of asTTle in te reo and the subject of writing.