cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5151577.v1
title: Burden of road traffic injuries related to delays in implementing safety belt laws in low- and lower middle-income countries

description: <b>Objective</b>: Delayed implementation of effective road safety policies must be considered when quantifying the avoidable part of the fatal and non-fatal injuries burden. We sought to assess the avoidable part of Disability-Adjusted Life Years (DALYs) lost due to road-traffic injuries related to delays in implementing road safety laws in low- and lower middle-income countries. <b>Methods</b>: We chose one country for each of the regions of the World Health Organization (WHO) and World Bank (WB) country income levels. We used freely available data sets (WHO, International Traffic Safety Data and Analysis Group, the WB). Delays in implementation were calculated until 2013, from the year mandatory use of safety belts by motor vehicle front seat occupants had been first introduced worldwide. We used life expectancy tables and age groups as social values in the DALY calculation model. From the estimated total burden, avoidable DALYs were calculated using estimates of the effectiveness of seatbelt laws on fatal and non-fatal injuries combined, as extracted from published international reviews of evidence. <b>Results</b>: From the reference year 1972, implementation delays varied from 27 years (Uzbekistan) to 41 years in Bolivia (no seat belt law as of 2013). During delays, total absolute numbers of DALYs lost due to road-traffic injuries reached 8 462 099 in Nigeria, 7 203 570 in Morocco, 4 695 500 in Uzbekistan, 3 866 391 in Cambodia, 3 253 359 in Bolivia and 3 128 721 in Sri Lanka. Using effectiveness estimates ranging from 3 to 20% reduction, the avoidable burden of road-traffic injuries for car occupants were the highest in Uzbekistan (avoidable part from 1.2% to 10.4%) and in Morocco (avoidable part from 1.5% to 12.3%). In countries where users of public transport and pedestrians were the most affected by the burden, the avoidable parts ranged from 0.5% to 4.4% (Nigeria) and from 0.5% to 3.4% (Bolivia). Burden of road-traffic injuries mostly affected motorcyclists in Sri Lanka and Cambodia where the avoidable parts were less than 2% in both countries. In all selected countries, burden of traffic injuries mostly affected men (about 80%) as well as young people (15–34 years). <b>Conclusions</b>: Despite limited data availability in low- and middle-income countries, the avoidable part of the burden related to delayed intervention is measurable. These results can be used to convince countries to avoid delaying the provision of better protection to road users.
DOI: 10.6084/m9.figshare.5151523
title: 3-Year-Olds’ Perseveration on the DCCS Explained: A Meta-Analysis

description: The Dimensional Change Card Sort (DCCS) task is a widely used measure of preschoolers’ executive function. We combined data for 3,290 3-year-olds from 37 unique studies reporting 130 experimental conditions. Using raw pass/fail counts, we computed the pass rates and chi-squared value for each against chance (50/50) performance. We grouped data according to DCCS variants and computed the standard pass rate and chi-squared and phi for each variant relative to standard. For all standard versions, the mean pass rate was 36%. We compared all other variants to the standard and found robust improvements in performance for manipulations that involved spatial separation of the conflicting dimensions, use of distraction between pre and post-switch, elimination of all conflict, and extra practice. We also found that <i>negative priming</i> offers a better explanation for 3-year-olds’ perseveration than <i>attentional inertia</i>. The results support a theoretical model of 3-year-olds’ performance based on inhibitory control.
DOI: 10.6084/m9.figshare.5151547
title: Axial_Omics_Genomic_Bins_Contig_files

description: Genomic bins of four major groups found at Axial Seamount, reconstructed from metagenomes from Axial taken between 2013 and 2015 at three geochemically distinct vents, Anemone, Marker33, and Marker113. The four taxonomic groups are: SUP05, Aquificales, Sulfurovum, and methanogenic archaea.
DOI: 10.6084/m9.figshare.5151547.v1
title: Axial_Omics_Genomic_Bins_Contig_files

description: Genomic bins of four major groups found at Axial Seamount, reconstructed from metagenomes from Axial taken between 2013 and 2015 at three geochemically distinct vents, Anemone, Marker33, and Marker113. The four taxonomic groups are: SUP05, Aquificales, Sulfurovum, and methanogenic archaea.
DOI: 10.6084/m9.figshare.5151523.v1
title: 3-Year-Olds’ Perseveration on the DCCS Explained: A Meta-Analysis

description: The Dimensional Change Card Sort (DCCS) task is a widely used measure of preschoolers’ executive function. We combined data for 3,290 3-year-olds from 37 unique studies reporting 130 experimental conditions. Using raw pass/fail counts, we computed the pass rates and chi-squared value for each against chance (50/50) performance. We grouped data according to DCCS variants and computed the standard pass rate and chi-squared and phi for each variant relative to standard. For all standard versions, the mean pass rate was 36%. We compared all other variants to the standard and found robust improvements in performance for manipulations that involved spatial separation of the conflicting dimensions, use of distraction between pre and post-switch, elimination of all conflict, and extra practice. We also found that <i>negative priming</i> offers a better explanation for 3-year-olds’ perseveration than <i>attentional inertia</i>. The results support a theoretical model of 3-year-olds’ performance based on inhibitory control.
DOI: 10.6084/m9.figshare.5151469
title: The impacts of suspended mariculture on coastal zones in China and the scope for Integrated Multi-Trophic Aquaculture

description: <b>Introduction</b>: China is responsible for more than 60% of global aquaculture production. As the frontiers of food production have expanded, the cultivation of marine organisms in coastal zones and the open ocean has grown rapidly. The dominant mariculture industry in China is suspended mariculture, which uses net cages, ropes, or other structures suspended in the water column to cultivate aquatic organisms. This systematic, quantitative review provides a clear and comprehensive account of research that has investigated the adverse impacts of suspended mariculture in China and reviews research that has applied Integrated Multi-Trophic Aquaculture (IMTA) systems for mitigating impacts. This work builds on 218 peer reviewed papers that have been published in English-language journals. <b>Outcomes</b>: Eighteen impacts were identified, including chemical, ecological, physical, and socioeconomic impacts. Eighteen measures for improving suspended mariculture were recommended consisting of government department, farm management, and ecological engineering measures. IMTA was the most frequently recommended measure. The capabilities of IMTA for bioremediation and increased farm production were the most frequently studied advantages. Seven other benefits have been explored but remain understudied. The current challenges facing the expansion of commercial IMTA include limited use of new technology, limited skills development, decreasing production of low trophic-level species, biogeographic and temporal barriers, and negative system feedbacks. <b>Conclusion</b>: Despite challenges, implementing commercial IMTA is a promising measure for reducing the impacts of suspended mariculture because it presents a range of secondary benefits that can improve the overall sustainability of aquaculture in the coastal zone.
DOI: 10.6084/m9.figshare.5151469.v1
title: The impacts of suspended mariculture on coastal zones in China and the scope for Integrated Multi-Trophic Aquaculture

description: <b>Introduction</b>: China is responsible for more than 60% of global aquaculture production. As the frontiers of food production have expanded, the cultivation of marine organisms in coastal zones and the open ocean has grown rapidly. The dominant mariculture industry in China is suspended mariculture, which uses net cages, ropes, or other structures suspended in the water column to cultivate aquatic organisms. This systematic, quantitative review provides a clear and comprehensive account of research that has investigated the adverse impacts of suspended mariculture in China and reviews research that has applied Integrated Multi-Trophic Aquaculture (IMTA) systems for mitigating impacts. This work builds on 218 peer reviewed papers that have been published in English-language journals. <b>Outcomes</b>: Eighteen impacts were identified, including chemical, ecological, physical, and socioeconomic impacts. Eighteen measures for improving suspended mariculture were recommended consisting of government department, farm management, and ecological engineering measures. IMTA was the most frequently recommended measure. The capabilities of IMTA for bioremediation and increased farm production were the most frequently studied advantages. Seven other benefits have been explored but remain understudied. The current challenges facing the expansion of commercial IMTA include limited use of new technology, limited skills development, decreasing production of low trophic-level species, biogeographic and temporal barriers, and negative system feedbacks. <b>Conclusion</b>: Despite challenges, implementing commercial IMTA is a promising measure for reducing the impacts of suspended mariculture because it presents a range of secondary benefits that can improve the overall sustainability of aquaculture in the coastal zone.
DOI: 10.6084/m9.figshare.5151409
title: Probing consciousness in a sensory-disconnected paralyzed patient

description: <i>Background</i>: Diagnosis of consciousness can be very challenging in some clinical situations such as severe sensory-motor impairments. <i>Case study</i>: We report the case study of a patient who presented a total “locked-in syndrome” associated with and a multi-sensory deafferentation (visual, auditory and tactile modalities) following a protuberantial infarction. <i>Result</i>: In spite of this severe and extreme disconnection from the external world, we could detect reliable evidence of consciousness using a multivariate analysis of his high-density resting state electroencephalogram. This EEG-based diagnosis was eventually confirmed by the clinical evolution of the patient. <i>Conclusion</i>: This approach illustrates the potential importance of functional brain-imaging data to improve diagnosis of consciousness and of cognitive abilities in critical situations in which the behavioral channel is compromised such as deafferented locked-in syndrome.
DOI: 10.6084/m9.figshare.5151406
title: A new triterpene ester and other chemical constituents from the aerial parts of <i>Anodendron paniculatum</i> and their cytotoxic activity

description: The aim of the research was to study the active constituents of <i>Anodendron paniculatum</i> Roxb. (Apocynaceae). A new triterpene ester, named anopaniester (<b>1</b>), and cycloartenol (<b>2</b>), ursolic acid (<b>3</b>), esculenic acid (<b>4</b>), bis-(2-ethylhexyl) phthalate (<b>5</b>), desmosterol (<b>6</b>), stigmasterol (<b>7</b>), vaniline (<b>8</b>), and (<i>E</i>)-phytol (<b>9</b>), were isolated from the aerial parts of <i>A. paniculatum.</i> Compounds <b>3</b> and <b>6</b> showed the significant inhibitory effect (IC<sub>50</sub> values ranging from 30.89 ± 3.60 to 44.37 ± 5.40 μg/ml) against tested human cancer cell lines LU-1 and MKN-7. The compounds <b>1</b>–<b>4</b>, and <b>6</b> were isolated from this genus <i>Anodendron</i> for the first time.
DOI: 10.6084/m9.figshare.5151406.v1
title: A new triterpene ester and other chemical constituents from the aerial parts of <i>Anodendron paniculatum</i> and their cytotoxic activity

description: The aim of the research was to study the active constituents of <i>Anodendron paniculatum</i> Roxb. (Apocynaceae). A new triterpene ester, named anopaniester (<b>1</b>), and cycloartenol (<b>2</b>), ursolic acid (<b>3</b>), esculenic acid (<b>4</b>), bis-(2-ethylhexyl) phthalate (<b>5</b>), desmosterol (<b>6</b>), stigmasterol (<b>7</b>), vaniline (<b>8</b>), and (<i>E</i>)-phytol (<b>9</b>), were isolated from the aerial parts of <i>A. paniculatum.</i> Compounds <b>3</b> and <b>6</b> showed the significant inhibitory effect (IC<sub>50</sub> values ranging from 30.89 ± 3.60 to 44.37 ± 5.40 μg/ml) against tested human cancer cell lines LU-1 and MKN-7. The compounds <b>1</b>–<b>4</b>, and <b>6</b> were isolated from this genus <i>Anodendron</i> for the first time.
DOI: 10.6084/m9.figshare.5151409.v1
title: Probing consciousness in a sensory-disconnected paralyzed patient

description: <i>Background</i>: Diagnosis of consciousness can be very challenging in some clinical situations such as severe sensory-motor impairments. <i>Case study</i>: We report the case study of a patient who presented a total “locked-in syndrome” associated with and a multi-sensory deafferentation (visual, auditory and tactile modalities) following a protuberantial infarction. <i>Result</i>: In spite of this severe and extreme disconnection from the external world, we could detect reliable evidence of consciousness using a multivariate analysis of his high-density resting state electroencephalogram. This EEG-based diagnosis was eventually confirmed by the clinical evolution of the patient. <i>Conclusion</i>: This approach illustrates the potential importance of functional brain-imaging data to improve diagnosis of consciousness and of cognitive abilities in critical situations in which the behavioral channel is compromised such as deafferented locked-in syndrome.
DOI: 10.6084/m9.figshare.5151250
title: Data: The beauty and the beast: confronting species aesthetics to ecological functions (Tribot et al.)

description: Content: Scientific names and taxonomy of studied speciesMean and SD of aesthetic scores calculated for 169 fishesMean and SD of aesthetic scores calculated for 169 fishes according to divers and non-diversGASPAR functional traitsFunctional spaces coordinates <br><br>
DOI: 10.6084/m9.figshare.5151247
title: seguret_dryad_2017.rar

description: Each directory stores 12 trials with the number of zebrafish displayed in the name of the directory (1 AB is for 12 trials of 1 zebrafish AB)<br>for the directory 20AB, the data show only the positions of the individuals without their identities. The first column is for the time, then columns go by two (for x position then y position)<br>For the directories 2AB, 3AB, 5AB, 7AB and 10AB, the data are ranked to gap and no gap. Gap means there are nan in the files when the tracker can not identify the positions of the fish, in nogap the tracker created positions in function of the previous and next entries. For each file, the first column shows the time, then the columns go by two (x position and y position) and keep the identity of each fish.
DOI: 10.6084/m9.figshare.5151247.v1
title: seguret_dryad_2017.rar

description: Each directory stores 12 trials with the number of zebrafish displayed in the name of the directory (1 AB is for 12 trials of 1 zebrafish AB)<br>for the directory 20AB, the data show only the positions of the individuals without their identities. The first column is for the time, then columns go by two (for x position then y position)<br>For the directories 2AB, 3AB, 5AB, 7AB and 10AB, the data are ranked to gap and no gap. Gap means there are nan in the files when the tracker can not identify the positions of the fish, in nogap the tracker created positions in function of the previous and next entries. For each file, the first column shows the time, then the columns go by two (x position and y position) and keep the identity of each fish.
DOI: 10.6084/m9.figshare.5151193
title: DM_New_Report.xlsx

description: This is a database for article.<br>The research protocol was approved by the Biomedical Research Ethics Council at the District 9 Hospital, Ho Chi Minh City, Vietnam.<br>
DOI: 10.6084/m9.figshare.5151184
title: Supplementary Material for: A Novel Homozygous SACS Mutation Identified by Whole-Exome Sequencing in a Consanguineous Family with Autosomal Recessive Spastic Ataxia of Charlevoix-Saguenay

description: Autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS) is a hereditary neurological disorder mostly manifested with a classical triad: progressive early-onset cerebellar ataxia, lower limb pyramidal signs, and peripheral neuropathy. We employed whole-exome sequencing and bioinformatics to identify the genetic cause in an ARSACS patient from a consanguineous family. Based on whole-exome sequences of the patient and her healthy parents, a novel homozygous deletion variant (NM_014363: c.9495_9508del; p.F3166Tfs*9) in the <i>SACS</i> gene was identified in the patient. This frameshift mutation is predicted to generate a truncated sacsin protein, which results in the loss of the C-terminal 1,406 amino acids. Our study provides a potential genetic diagnosis for the patient and expands the spectrum of <i>SACS</i> mutations.
DOI: 10.6084/m9.figshare.5151190
title: T-Rex : A Large Scale Alignment of Natural Language with Knowledge Base Triples [Full Dump NIF]

description: Several datasets with alignments between knowledge base triples and free text have been built, for several independent tasks, such as Relation Extraction, Knowledge base population, Relation Discovery…But where the others datasets have a small number of documents (<em>TAC-KBP</em>), only have the relations without the original documents (<em>FB15K-237</em>), have a little amount of relations (<em>Google-RE</em>), we present a dataset containing large-scale high-quality alignments between DBpedia abstracts and Wikidata triples, <em>T-REx</em>.
DOI: 10.6084/m9.figshare.5151187
title: Supplementary Material for: Long-Term Outcomes of Patients with Central Precocious Puberty due to Hypothalamic Hamartoma after GnRHa Treatment: Anthropometric, Metabolic, and Reproductive Aspects

description: <strong><em>Background:</em></strong> Hypothalamic hamartoma (HH) represents the commonest cause of organic central precocious puberty (CPP). Follow-up of these patients in adulthood is scarce. <b><i>Objective:</i></b> To describe the anthropometric, metabolic, and reproductive parameters of patients with CPP due to HH before and after treatment with gonadotropin-releasing hormone analog (GnRHa). <b><i>Methods:</i></b> We performed a retrospective and cross-sectional study in a single tertiary center including 14 patients (7 females) with CPP due to HH. <b><i>Results:</i></b> The mean duration of GnRHa treatment was 7.7 ± 2.4 years in boys and 7.9 ± 2.1 years in girls. GnRHa treatment was interrupted at the mean chronological age (CA) of 12.1 ± 1.1 years in boys and 10.7 ± 0.5 years in girls. At the last visit, the mean CA of the male and female patients was 21.5 ± 3.2 and 24 ± 3.9 years, respectively. Eleven of the 14 patients reached normal final height (FH) (standard deviation score -0.6 ± 0.9 for males and -0.6 ± 0.5 for females), all of them within the target height (TH) range. The remaining 3 patients had predicted height within the TH range. The mean body mass index and the percentage of body fat mass was significantly higher in females, with a higher prevalence of metabolic disorders. All patients presented normal gonadal function in adulthood, and 3 males fathered a child. <b><i>Conclusion:</i></b> All patients with CPP due to HH reached normal FH or near-FH. A higher prevalence of overweight/obesity and hypercholesterolemia was observed in the female patients. Finally, no reproductive disorder was identified in both sexes, indicating that HH per se has no deleterious effect on the gonadotropic axis in adulthood.
DOI: 10.6084/m9.figshare.5151193.v1
title: DM_New_Report.xlsx

description: This is a database for article.<br>The research protocol was approved by the Biomedical Research Ethics Council at the District 9 Hospital, Ho Chi Minh City, Vietnam.<br>
DOI: 10.6084/m9.figshare.5151178
title: T-Rex : A Large Scale Alignment of Natural Language with Knowledge Base Triples [NIF SAMPLE]

description: This is a RDF sample of 10K documents of T-REx using the NIF format for annotation of natural language in RDF.<br>T-Rex : A Large Scale Alignment of Natural Language with Knowledge Base Triples <br>more info : w3id.org/t-rex<br>
DOI: 10.6084/m9.figshare.5151184.v1
title: Supplementary Material for: A Novel Homozygous SACS Mutation Identified by Whole-Exome Sequencing in a Consanguineous Family with Autosomal Recessive Spastic Ataxia of Charlevoix-Saguenay

description: Autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS) is a hereditary neurological disorder mostly manifested with a classical triad: progressive early-onset cerebellar ataxia, lower limb pyramidal signs, and peripheral neuropathy. We employed whole-exome sequencing and bioinformatics to identify the genetic cause in an ARSACS patient from a consanguineous family. Based on whole-exome sequences of the patient and her healthy parents, a novel homozygous deletion variant (NM_014363: c.9495_9508del; p.F3166Tfs*9) in the <i>SACS</i> gene was identified in the patient. This frameshift mutation is predicted to generate a truncated sacsin protein, which results in the loss of the C-terminal 1,406 amino acids. Our study provides a potential genetic diagnosis for the patient and expands the spectrum of <i>SACS</i> mutations.
DOI: 10.6084/m9.figshare.5151175
title: T-Rex : A Large Scale Alignment of Natural Language with Knowledge Base Triples [JSON SAMPLE]

description: This is a JSON sample of 10K documents of T-REx<br>T-Rex : A Large Scale Alignment of Natural Language with Knowledge Base Triples <br>more info : w3id.org/t-rex<br><br>
DOI: 10.6084/m9.figshare.5151163
title: Simulated virome datasest for assembly and annotation tests

description: Here, we provide simulated virome datasets that mimic environmental data challenges that can be used to assess the performance of assemblers and annotation programs. These datasets were published in:<br><br>Uljana Hesse, Peter van Heusden, Bronwyn M. Kirby, Israel Olonade, Leonardo J.vanZyl, MarlaTrindade (2017) Virome Assembly and Annotation: A Surprise in the Namib Desert Frontiers in Microbiology 8:13. doi: 10.3389/fmicb.2017.00013<br>
DOI: 10.6084/m9.figshare.5151163.v1
title: Simulated virome datasest for assembly and annotation tests

description: Here, we provide simulated virome datasets that mimic environmental data challenges that can be used to assess the performance of assemblers and annotation programs. These datasets were published in:<br><br>Uljana Hesse, Peter van Heusden, Bronwyn M. Kirby, Israel Olonade, Leonardo J.vanZyl, MarlaTrindade (2017) Virome Assembly and Annotation: A Surprise in the Namib Desert Frontiers in Microbiology 8:13. doi: 10.3389/fmicb.2017.00013<br>
DOI: 10.6084/m9.figshare.5151151
title: Appendix D Originele Moederdatabase Van Dinter 2017

description: An extended version of Appendix D- Section A of Van Dinter 2017 (PhD thesis) with remarks and height of vegetation horizons, elevation levels and composition of deposits, thickness and age of cultural layers and various remarks (all in Dutch).