cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6823955
title: Additional file 3: of Suppression of PDHX by microRNA-27b deregulates cell metabolism and promotes growth in breast cancer

description: Table S2. Raw TCGA data used for survival analysis. Patient clinical information was downloaded for the TCGA patients with breast invasive carcinoma (BRCA) from cBioPortal and PDHX gene expression quantification data was downloaded from Genomic Data Commons Data Portal. (XLSX 104Â kb)
DOI: 10.6084/m9.figshare.6823955.v1
title: Additional file 3: of Suppression of PDHX by microRNA-27b deregulates cell metabolism and promotes growth in breast cancer

description: Table S2. Raw TCGA data used for survival analysis. Patient clinical information was downloaded for the TCGA patients with breast invasive carcinoma (BRCA) from cBioPortal and PDHX gene expression quantification data was downloaded from Genomic Data Commons Data Portal. (XLSX 104Â kb)
DOI: 10.6084/m9.figshare.6823937
title: Additional file 2: of Suppression of PDHX by microRNA-27b deregulates cell metabolism and promotes growth in breast cancer

description: Table S1. Results of composite miRWalk target prediction. The top 30 are shown. Of these, PPP1CC, CDH11PLK2, JMJD1C, FN1, IRS1, NCOA7, YPEL3, MAP2K4 and PDHX were chosen for validation by luciferase assay. A cut-off was set for each program giving a binary prediction indicated as 1 or 0. These were tallied and those targets predicted by the most algorithms were considered the best potential targets. Raw data used for the survival analysis are included in Additional file 3: Table S2. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6823937.v1
title: Additional file 2: of Suppression of PDHX by microRNA-27b deregulates cell metabolism and promotes growth in breast cancer

description: Table S1. Results of composite miRWalk target prediction. The top 30 are shown. Of these, PPP1CC, CDH11PLK2, JMJD1C, FN1, IRS1, NCOA7, YPEL3, MAP2K4 and PDHX were chosen for validation by luciferase assay. A cut-off was set for each program giving a binary prediction indicated as 1 or 0. These were tallied and those targets predicted by the most algorithms were considered the best potential targets. Raw data used for the survival analysis are included in Additional file 3: Table S2. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6823925
title: Additional file 3: of Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data

description: Table S1. Numbers of indexed k-mer for each transcript. Table S2. List of paralogous genes and number of indexed k-mers. Table S3. List of enriched biological process GO terms in uncovered genes. Table S4. List of enriched molecular function GO terms in uncovered genes. Table S5: Details of the uncovered genes in GENCODE transcripts. (XLSX 3579 kb)
DOI: 10.6084/m9.figshare.6823925.v1
title: Additional file 3: of Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data

description: Table S1. Numbers of indexed k-mer for each transcript. Table S2. List of paralogous genes and number of indexed k-mers. Table S3. List of enriched biological process GO terms in uncovered genes. Table S4. List of enriched molecular function GO terms in uncovered genes. Table S5: Details of the uncovered genes in GENCODE transcripts. (XLSX 3579 kb)
DOI: 10.6084/m9.figshare.6823913
title: Additional file 2: of Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data

description: Source code of Matataki. (GZ 7760 kb)
DOI: 10.6084/m9.figshare.6823913.v1
title: Additional file 2: of Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data

description: Source code of Matataki. (GZ 7760 kb)
DOI: 10.6084/m9.figshare.6823856
title: Additional file 1 of Discovering themes in biomedical literature using a projection-based algorithm

description: Analysis of the projection algorithm. The file provides the proof of convergence, and identifies a convenient stopping criterion for the projection algorithm. (CVS 149 kb)
DOI: 10.6084/m9.figshare.6823856.v1
title: Additional file 1 of Discovering themes in biomedical literature using a projection-based algorithm

description: Analysis of the projection algorithm. The file provides the proof of convergence, and identifies a convenient stopping criterion for the projection algorithm. (CVS 149 kb)
DOI: 10.6084/m9.figshare.6823811
title: Additional file 1: of Recessive mutations in ATP8A2 cause severe hypotonia, cognitive impairment, hyperkinetic movement disorders and progressive optic atrophy

description: Table S1. Exome sequencing of individuals with ATP8A2 mutations. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6823811.v1
title: Additional file 1: of Recessive mutations in ATP8A2 cause severe hypotonia, cognitive impairment, hyperkinetic movement disorders and progressive optic atrophy

description: Table S1. Exome sequencing of individuals with ATP8A2 mutations. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6823784
title: Additional file 3: of Are standardized caries risk assessment models effective in assessing actual caries status and future caries increment? A systematic review

description: Quality assessment (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6823784.v1
title: Additional file 3: of Are standardized caries risk assessment models effective in assessing actual caries status and future caries increment? A systematic review

description: Quality assessment (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6823769
title: Additional file 2: of Are standardized caries risk assessment models effective in assessing actual caries status and future caries increment? A systematic review

description: List of papers excluded in the second selection (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6823769.v1
title: Additional file 2: of Are standardized caries risk assessment models effective in assessing actual caries status and future caries increment? A systematic review

description: List of papers excluded in the second selection (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6823760
title: Additional file 1: of Are standardized caries risk assessment models effective in assessing actual caries status and future caries increment? A systematic review

description: List of papers excluded in the first selection (XLSX 54 kb)
DOI: 10.6084/m9.figshare.6823760.v1
title: Additional file 1: of Are standardized caries risk assessment models effective in assessing actual caries status and future caries increment? A systematic review

description: List of papers excluded in the first selection (XLSX 54 kb)
DOI: 10.6084/m9.figshare.6823727
title: Additional file 5: of Accumulation of potential driver genes with genomic alterations predicts survival of high-risk neuroblastoma patients

description: A list of 18 patient-specific drivers separating the whole 145 patients into two survival groups. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6823727.v1
title: Additional file 5: of Accumulation of potential driver genes with genomic alterations predicts survival of high-risk neuroblastoma patients

description: A list of 18 patient-specific drivers separating the whole 145 patients into two survival groups. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6823709
title: Additional file 4: of Accumulation of potential driver genes with genomic alterations predicts survival of high-risk neuroblastoma patients

description: A list of 66 patient-specific drivers and the corresponding frequency in high-risk neuroblastoma patients. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6823709.v1
title: Additional file 4: of Accumulation of potential driver genes with genomic alterations predicts survival of high-risk neuroblastoma patients

description: A list of 66 patient-specific drivers and the corresponding frequency in high-risk neuroblastoma patients. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6823703
title: Additional file 4: of DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant Silene latifolia

description: Table S1. Primer list. List of primers used in this work. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.6823703.v1
title: Additional file 4: of DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant Silene latifolia

description: Table S1. Primer list. List of primers used in this work. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.6823694
title: Additional file 3: of Accumulation of potential driver genes with genomic alterations predicts survival of high-risk neuroblastoma patients

description: A list of 52 neuroblastoma related genes from literature. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6823694.v1
title: Additional file 3: of Accumulation of potential driver genes with genomic alterations predicts survival of high-risk neuroblastoma patients

description: A list of 52 neuroblastoma related genes from literature. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6823685
title: Additional file 3: of DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant Silene latifolia

description: Bisulfite sequencing analysis. This is an excel file with the data of sodium bisulfite sequencing analysis from those regions in the different genes with a significant enrichment in the MeDIP experiment. These data were obtained to support the positive results in the MeDIP to confirm the methylation enrichment. A general methylation context plot is also included. (XLSX 16980Â kb)
DOI: 10.6084/m9.figshare.6823685.v1
title: Additional file 3: of DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant Silene latifolia

description: Bisulfite sequencing analysis. This is an excel file with the data of sodium bisulfite sequencing analysis from those regions in the different genes with a significant enrichment in the MeDIP experiment. These data were obtained to support the positive results in the MeDIP to confirm the methylation enrichment. A general methylation context plot is also included. (XLSX 16980Â kb)
DOI: 10.6084/m9.figshare.6823664
title: Additional file 2: of DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant Silene latifolia

description: Gene sequence similarity. This is an excel file including the percentage of similarity when comparing the same region (e.g. promoter) of a gene in Silene vulgaris and in Silene latifolia X and Y alleles. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.6823664.v1
title: Additional file 2: of DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant Silene latifolia

description: Gene sequence similarity. This is an excel file including the percentage of similarity when comparing the same region (e.g. promoter) of a gene in Silene vulgaris and in Silene latifolia X and Y alleles. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.6823655
title: Additional file 1: of Accumulation of potential driver genes with genomic alterations predicts survival of high-risk neuroblastoma patients

description: Summarized information of clinical data from the 145 neuroblastoma patients. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6823652
title: Additional file 1: of DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant Silene latifolia

description: Expression and methylation enrichment data. This is an excel file with the expression and methylation graphs belonging to the different genes under analysis in this work. There is also included an expression correlation plot between Silene latifolia and Silene vulgaris. (XLSX 156Â kb)
DOI: 10.6084/m9.figshare.6823655.v1
title: Additional file 1: of Accumulation of potential driver genes with genomic alterations predicts survival of high-risk neuroblastoma patients

description: Summarized information of clinical data from the 145 neuroblastoma patients. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6823652.v1
title: Additional file 1: of DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant Silene latifolia

description: Expression and methylation enrichment data. This is an excel file with the expression and methylation graphs belonging to the different genes under analysis in this work. There is also included an expression correlation plot between Silene latifolia and Silene vulgaris. (XLSX 156Â kb)
DOI: 10.6084/m9.figshare.6823631
title: Additional file 5: of Amino acid permease 3 (aap3) coding sequence as a target for Leishmania identification and diagnosis of leishmaniases using high resolution melting analysis

description: Statistical analysis of melting temperatures (Tmâ s) for all amplicons. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6823631.v1
title: Additional file 5: of Amino acid permease 3 (aap3) coding sequence as a target for Leishmania identification and diagnosis of leishmaniases using high resolution melting analysis

description: Statistical analysis of melting temperatures (Tmâ s) for all amplicons. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6823586
title: Additional file 1: of Re-development of mental health first aid guidelines for supporting Aboriginal and Torres Strait islanders who are experiencing suicidal thoughts and behaviour

description: Items endorsed and rejected from the guidelines. The data supporting our findings is attached as Additional file 1, which contains the ratings for all the statements that were presented to the panel. (XLSX 31Â kb).
DOI: 10.6084/m9.figshare.6823586.v1
title: Additional file 1: of Re-development of mental health first aid guidelines for supporting Aboriginal and Torres Strait islanders who are experiencing suicidal thoughts and behaviour

description: Items endorsed and rejected from the guidelines. The data supporting our findings is attached as Additional file 1, which contains the ratings for all the statements that were presented to the panel. (XLSX 31Â kb).
DOI: 10.5519/qd.d2w6pvij
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (904 records)
DOI: 10.6084/m9.figshare.6823547
title: Additional file 1: of Norwegian translation, cultural adaption and testing of the Person-centred Practice Inventory â Staff (PCPI-S)

description: Dataset for testing of PCIP Staff. SPSS original dataset for psychometric analyses. (SAV 32 kb)
DOI: 10.6084/m9.figshare.6823547.v1
title: Additional file 1: of Norwegian translation, cultural adaption and testing of the Person-centred Practice Inventory â Staff (PCPI-S)

description: Dataset for testing of PCIP Staff. SPSS original dataset for psychometric analyses. (SAV 32 kb)
DOI: 10.6084/m9.figshare.6823508
title: Data from Scenario planning with linked land-sea models inform where forest conservation actions will promote coral reef resilience

description: We developed a linked land-sea modeling framework based on remote sensing and empirical data, which couples sediment export and coral reef models at fine spatial resolution. This spatially-explicit (60 x 60 m) framework simultaneously tracks changes in multiple benthic and fish indicators as a function of land-use and climate change scenarios. We applied this framework in Kubulau District, Fiji, to investigate the effects of logging, agriculture expansion, and restoration on coral reef resilience. Under the deforestation scenario, models projected a 4.5-fold sediment increase (&gt;7,000 t. yr<sup>-1</sup>) coupled with a significant decrease in benthic habitat quality across 1,940 ha and a reef fish biomass loss of 60.6 tons. Under the restoration scenario, models projected a small (&lt;30 t. yr<sup>-1</sup>) decrease in exported sediments, resulting in a significant increase in benthic habitat quality across 577 ha and a fish biomass gain of 5.7 tons. The decrease in benthic habitat quality and loss of fish biomass were greater when combining climate change and deforestation scenarios. We evaluated where land-use change and bleaching scenarios would impact sediment runoff and downstream coral reefs to identify priority areas on land, where conservation or restoration could promote coral reef resilience in the face of climate change.
DOI: 10.6084/m9.figshare.6823508.v1
title: Data from Scenario planning with linked land-sea models inform where forest conservation actions will promote coral reef resilience

description: We developed a linked land-sea modeling framework based on remote sensing and empirical data, which couples sediment export and coral reef models at fine spatial resolution. This spatially-explicit (60 x 60 m) framework simultaneously tracks changes in multiple benthic and fish indicators as a function of land-use and climate change scenarios. We applied this framework in Kubulau District, Fiji, to investigate the effects of logging, agriculture expansion, and restoration on coral reef resilience. Under the deforestation scenario, models projected a 4.5-fold sediment increase (&gt;7,000 t. yr<sup>-1</sup>) coupled with a significant decrease in benthic habitat quality across 1,940 ha and a reef fish biomass loss of 60.6 tons. Under the restoration scenario, models projected a small (&lt;30 t. yr<sup>-1</sup>) decrease in exported sediments, resulting in a significant increase in benthic habitat quality across 577 ha and a fish biomass gain of 5.7 tons. The decrease in benthic habitat quality and loss of fish biomass were greater when combining climate change and deforestation scenarios. We evaluated where land-use change and bleaching scenarios would impact sediment runoff and downstream coral reefs to identify priority areas on land, where conservation or restoration could promote coral reef resilience in the face of climate change.
DOI: 10.6084/m9.figshare.6823373
title: RPS Sistem Informasi Manajemen

description: Rancangan Pembelajaran Studi untuk mata kuliah Sistem Informasi Manajemen yang ditujukan kepada mahasiswa Manajemen tingkat sarjana.<br>
DOI: 10.6084/m9.figshare.6823334
title: Open Journal System

description: Presentation file for Open JOurnal System
DOI: 10.6084/m9.figshare.6823196
title: Matsumura 2018 SciRep 8 7298 Data.csv

description: Matsumura et al. 2018 Sci Rep 8 7298 's data for share
DOI: 10.6084/m9.figshare.6823196.v1
title: Matsumura 2018 SciRep 8 7298 Data.csv

description: Matsumura et al. 2018 Sci Rep 8 7298 's data for share
DOI: 10.6084/m9.figshare.6823184
title: Small-bleb deep learning training set

description: Grayscale images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Images have been background subtracted (ImageJ: 50 pixel radius rolling ball). Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823184.v1
title: Small-bleb deep learning training set

description: Grayscale images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Images have been background subtracted (ImageJ: 50 pixel radius rolling ball). Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823178
title: Lamellipodia deep learning training set

description: Grayscale images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Images have been background subtracted (ImageJ: 50 pixel radius rolling ball). Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823178.v1
title: Lamellipodia deep learning training set

description: Grayscale images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Images have been background subtracted (ImageJ: 50 pixel radius rolling ball). Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823175
title: Hemi-sphere bleb deep learning training set

description: Grayscale images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Images have been background subtracted (ImageJ: 50 pixel radius rolling ball). Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.12887312.v1
title: R0189_20170926a_videos

description: Rat 0189, skilled reaching data collected on 9/26/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.6823175.v1
title: Hemi-sphere bleb deep learning training set

description: Grayscale images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Images have been background subtracted (ImageJ: 50 pixel radius rolling ball). Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823172
title: Filopodia deep learning training set

description: Grayscale images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Images have been background subtracted (ImageJ: 50 pixel radius rolling ball). Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823199.v5
title: Scatter plot of peak levels of plasma glucagon measured by RIA and ELISA

description: Scatter plot of peak levels of plasma glucagon measured by RIA and ELISA. Solid line shows an approximate line between each measurement. RIA: radioimmunoassay; ELISA: enzyme-linked immunosorbent assay; AUC: area under the curve of arginine-stimulated glucagon levels
DOI: 10.6084/m9.figshare.6823172.v1
title: Filopodia deep learning training set

description: Grayscale images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Images have been background subtracted (ImageJ: 50 pixel radius rolling ball). Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823163
title: Actin-enriched leading edge deep learning training set

description: Grayscale images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Images have been background subtracted (ImageJ: 50 pixel radius rolling ball). Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823133
title: PONE-D-18-13179_Figures

description: Raw figures used in study PONE-D-18-13179: Subtyping patients with somatic tinnitus: modulation of tinnitus and history for somatic dysfunction help identify tinnitus patients with temporomandibular joint disorders.
DOI: 10.6084/m9.figshare.6823133.v1
title: PONE-D-18-13179_Figures

description: Raw figures used in study PONE-D-18-13179: Subtyping patients with somatic tinnitus: modulation of tinnitus and history for somatic dysfunction help identify tinnitus patients with temporomandibular joint disorders.
DOI: 10.6084/m9.figshare.6823163.v1
title: Actin-enriched leading edge deep learning training set

description: Grayscale images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Images have been background subtracted (ImageJ: 50 pixel radius rolling ball). Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823130
title: Small-bleb SVM test set

description: Binary images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823127
title: Small-bleb SVM validation set

description: Binary images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823130.v1
title: Small-bleb SVM test set

description: Binary images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823124
title: PONE-D-18-13179_Tables

description: Raw tables used in study PONE-D-18-13179: Subtyping patients with somatic tinnitus: modulation of tinnitus and history for somatic dysfunction help identify tinnitus patients with temporomandibular joint disorders.
DOI: 10.6084/m9.figshare.6823127.v1
title: Small-bleb SVM validation set

description: Binary images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823121
title: Lamellipodia SVM test set

description: Binary images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Cells manually classified based on morphology alone (no staining).
DOI: 10.6084/m9.figshare.6823124.v1
title: PONE-D-18-13179_Tables

description: Raw tables used in study PONE-D-18-13179: Subtyping patients with somatic tinnitus: modulation of tinnitus and history for somatic dysfunction help identify tinnitus patients with temporomandibular joint disorders.
DOI: 10.6084/m9.figshare.6823118
title: Lamellipodia SVM validation set

description: Binary images of MDA-MB-231 GFP cells in 3D Collagen-I matrices. Cells manually classified based on morphology alone (no staining).