cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26360752
title: Divergent Immune Strategies of Colorado Potato Beetle Larvae against the Entomopathogenic Fungi Metarhizium robertsii and Beauveria bassiana. A Comparative Transcriptomic Analysis. Supplementary data.

description: <b>Abstract</b>The entomopathogenic fungi Beauveria bassiana and Metarhizium robertsii are natural pathogens of the Colorado potato beetle (CPB) and hold promise for biocontrol. However, the insect’s immune responses to fungal infections remain poorly understood. In this study, we performed transcriptomic analyses of hemocytes and fat body tissue from CPB larvae topically infected with B. bassiana and M. robertsii at the stage of pathogen encapsulation. Quantitative PCR validation of gene expression, along with complementary physiological and biochemical assays, were also conducted. Reference gene annotations were expanded using both the classical bioinformatic tool InterProScan and the AI-based tool ProteInfer. For the first time, pathogen-specific differences in CPB tissue responses to fungal infections were revealed. Gene Ontology enrichment and expression profiles of immune-related genes indicated a stronger antifungal response to M. robertsii, whereas infection with B. bassiana was associated with enhanced protection against self-damage. Pathogenspecific responses were linked to the expression of genes encoding certain receptors, serine proteases, serpins, Toll signaling components, antimicrobial peptides, chitin deacetylases, chitin synthases, laccases, as well as to the production of phenoloxidases and reactive oxygen species. The most diverse and pathogen-specific gene expression changes occurred in hemocytes rather than in the fat body. We propose that the observed differences in immune responses are mainly driven by the fungal enzymatic machinery, secondary metabolites, and pigments. The differentially expressed genes identified in this study provide novel insights into insect–pathogen interactions and represent promising molecular targets for advancing both fundamental research on insect immunity and the applied development of innovative biocontrol strategies.<b>Supplementary tables:</b><br><b>Table S1.</b> List of genes and primers for qPCR.<b>Table S2.</b> Extended gene annotation and the results of differential gene expression analysis in hemocytes and the fat body of Colorado potato beetle larvae in response to fungal infections.<b>Table S3.</b> Gene Ontology enrichment analysis of differentially expressed genes in hemocytes and the fat body of Colorado potato beetle larvae in response to fungal infections.<b>Table S4.</b> Differential expression of immune-related genes in hemocytes and the fat body of Colorado potato beetle larvae in response to fungal infections. Extended gene annotation is shown.<br>
DOI: 10.6084/m9.figshare.26360752.v3
title: Divergent Immune Strategies of Colorado Potato Beetle Larvae against the Entomopathogenic Fungi Metarhizium robertsii and Beauveria bassiana. A Comparative Transcriptomic Analysis. Supplementary data.

description: <b>Abstract</b>The entomopathogenic fungi Beauveria bassiana and Metarhizium robertsii are natural pathogens of the Colorado potato beetle (CPB) and hold promise for biocontrol. However, the insect’s immune responses to fungal infections remain poorly understood. In this study, we performed transcriptomic analyses of hemocytes and fat body tissue from CPB larvae topically infected with B. bassiana and M. robertsii at the stage of pathogen encapsulation. Quantitative PCR validation of gene expression, along with complementary physiological and biochemical assays, were also conducted. Reference gene annotations were expanded using both the classical bioinformatic tool InterProScan and the AI-based tool ProteInfer. For the first time, pathogen-specific differences in CPB tissue responses to fungal infections were revealed. Gene Ontology enrichment and expression profiles of immune-related genes indicated a stronger antifungal response to M. robertsii, whereas infection with B. bassiana was associated with enhanced protection against self-damage. Pathogenspecific responses were linked to the expression of genes encoding certain receptors, serine proteases, serpins, Toll signaling components, antimicrobial peptides, chitin deacetylases, chitin synthases, laccases, as well as to the production of phenoloxidases and reactive oxygen species. The most diverse and pathogen-specific gene expression changes occurred in hemocytes rather than in the fat body. We propose that the observed differences in immune responses are mainly driven by the fungal enzymatic machinery, secondary metabolites, and pigments. The differentially expressed genes identified in this study provide novel insights into insect–pathogen interactions and represent promising molecular targets for advancing both fundamental research on insect immunity and the applied development of innovative biocontrol strategies.<b>Supplementary tables:</b><br><b>Table S1.</b> List of genes and primers for qPCR.<b>Table S2.</b> Extended gene annotation and the results of differential gene expression analysis in hemocytes and the fat body of Colorado potato beetle larvae in response to fungal infections.<b>Table S3.</b> Gene Ontology enrichment analysis of differentially expressed genes in hemocytes and the fat body of Colorado potato beetle larvae in response to fungal infections.<b>Table S4.</b> Differential expression of immune-related genes in hemocytes and the fat body of Colorado potato beetle larvae in response to fungal infections. Extended gene annotation is shown.<br>
DOI: 10.5519/qd.8wlcxnun
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2572 records)
DOI: 10.5519/qd.d18s5y0n
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2572 records)
DOI: 10.5519/qd.qjht35s3
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2572 records)
DOI: 10.5519/qd.ya7neicm
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2572 records)
DOI: 10.5519/qd.yjgy8o8a
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2572 records)
DOI: 10.17026/ar/ci76dz
title: Moerdijk Noordhoek Groeneweg 3 Noordhoek Groeneweg 3 Moerdijk

description: &lt;p&gt;ADC ArcheoProjecten heeft een Archeologische Begeleiding uitgevoerd ten behoeve van de geplande nieuwbouw op de locatie Groeneweg 3 te Noordhoek, gemeente Moerdijk. Bij het archeologisch onderzoek is de aanleg van de bouwput begeleid. Naar aanleiding van de resultaten van het onderzoek is op 16 oktober 2023 een aanvullend archeologisch onderzoek (archeologische begeleiding variant proefsleuven) uitgevoerd, specifiek gericht op het vaststellen van archeologische waarden op drie extra locaties. Uit de resultaten van de archeologische begeleiding blijkt dat een groot deel van de onderzoekszone verstoord is. Deze verstoringen zijn direct te relateren aan de locaties waar tot voor kort de agrarische loodsen hebben gestaan. Ten westen van de loodsen is de bodem nog wel intact, maar zijn geen archeologische sporen gevonden. Net ten oosten van de verstoring zijn wel archeologische sporen aangetroffen. Daarbij gaat het om muurresten en een straatje dat mede op basis van historische bronnen tussen de 17e eeuw en begin 19e eeuw gedateerd moet worden. Ook kunnen historische bronnen aanduiden dat de schuur en het straatje eind van de 19e eeuw afgebroken zullen zijn.&lt;/p&gt;
DOI: 10.5281/zenodo.18611119
title: Glottography dataset derived from Allen et al. 2016 "Resource scarcity drives lethal aggression among prehistoric hunter-gatherers in central California"

description: Cite the source of the dataset as:




M.W. Allen, R.L. Bettinger, B.F. Codding, T.L. Jones, A.W. Schwitalla, Resource scarcity drives lethal aggression among prehistoric hunter-gatherers in central California, Proc. Natl. Acad. Sci. U.S.A. 113 (43) 12120-12125, https://doi.org/10.1073/pnas.1607996113 (2016).
DOI: 10.5281/zenodo.17333164
title: Glottography dataset derived from Allen et al. 2016 "Resource scarcity drives lethal aggression among prehistoric hunter-gatherers in central California"

description: Cite the source of the dataset as:




M.W. Allen, R.L. Bettinger, B.F. Codding, T.L. Jones, A.W. Schwitalla, Resource scarcity drives lethal aggression among prehistoric hunter-gatherers in central California, Proc. Natl. Acad. Sci. U.S.A. 113 (43) 12120-12125, https://doi.org/10.1073/pnas.1607996113 (2016).
DOI: 10.15468/dl.avjzds
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Angraecum eburneum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 191 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008731-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsmvhf
title: Occurrence Download

description: A dataset containing 2449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andropogon leucostachyus",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 2449 records from 188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008732-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kff9v5
title: Occurrence Download

description: A dataset listing the 514 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((76.80125 42.76442,77.65806 42.76442,77.65806 43.10699,76.80125 43.10699,76.80125 42.76442))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Insecta"
 ]
}

 The dataset's 514 records were derived from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008702-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18611033
title: Incubation strategy and hatching start time affect the duration of the nestling period in precocial Arctic-breeding sandpipers
DOI: 10.5281/zenodo.18611034
title: Incubation strategy and hatching start time affect the duration of the nestling period in precocial Arctic-breeding sandpipers
DOI: 10.15468/ywhy9c
title: A new species of the genus Mimacronia Vives, 2009 (Coleoptera: Cerambycidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Barševskis, Arvīds (2015): A new species of the genus Mimacronia Vives, 2009 (Coleoptera: Cerambycidae). Baltic Journal of Coleopterology 15 (1): 1-8, DOI: 10.5281/zenodo.10667474
DOI: 10.48580/dfx8l.v16
title: A new species of the genus Mimacronia Vives, 2009 (Coleoptera: Cerambycidae)
DOI: 10.5519/qd.an7feq6z
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2690 records)
DOI: 10.6084/m9.figshare.30428647.v2
title: Crystal structure of the Legionella pneumophila effector SidL (Lpg0437) in complex with its metaeffector LegA11 (Lpg0436)

description: Crystal structure of the Legionella pneumophila effector SidL (Lpg0437) in complex with its metaeffector LegA11 (Lpg0436). Validation report for PDB: <i>9SXC</i>
DOI: 10.6084/m9.figshare.30428647
title: Crystal structure of the Legionella pneumophila effector SidL (Lpg0437) in complex with its metaeffector LegA11 (Lpg0436)

description: Crystal structure of the Legionella pneumophila effector SidL (Lpg0437) in complex with its metaeffector LegA11 (Lpg0436). Validation report for PDB: <i>9SXC</i>
DOI: 10.6084/m9.figshare.30428647.v1
title: PDB: 9XSC Validation Report

description: Validation report for PDB: <i>9SXC</i>
DOI: 10.15468/dl.zfk76w
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nasikabatrachus sahyadrensis"
 ]
}

 The dataset includes 43 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008734-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ah975
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Angraecum germinyanum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 23 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008738-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bv7pqc
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corydoras arcuatus",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 60 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008736-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdx98b
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Axonopus laxiflorus",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 54 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008741-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7dbzb
title: Occurrence Download

description: A dataset containing 16617 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-600.0",
 "Geometry POLYGON((-15 30,30 30,30 70,-15 70,-15 30))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Parietaria judaica",
 "Year 1970-2025"
 ]
}

 The dataset includes 16617 records from 177 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008740-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/4l7ucc
title: DSS-2024

description: Dwarf Lake Iris data sheet scans for 2024.
DOI: 10.15159/phytop.198
title: Leego

description: Phytoplankton biomass, diversity and abundance in samples collected from Lake Leego during the period 1952-2005.
DOI: 10.5284/1139410
title: Archaeological excavation on land east of Newbarn Road, Great Tey, Essex, CO6 1AD: August-September 2024

description: null
DOI: 10.34740/kaggle/dsv/14808798
title: WikiFirst
DOI: 10.15468/dl.bb55fz
title: Occurrence Download

description: A dataset containing 242045 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "Month is June",
 "OccurrenceStatus is Present",
 "Year 2015-2026"
 ]
}

 The dataset includes 242045 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008650-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwk44w
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aedes aegypti, Aedes albopictus, Aedes geniculatus, Aedes vexans, Aedes caspius, Culex pipiens, Culex theileri, Culex hortensis, Culex tritaeniorhynchus, Culiseta annulata, Culiseta longiareolata, Ixodes ricinus, Dermacentor reticulatus, Haemaphysalis inermis, Dermacentor marginatus, Rhipicephalus sanguineus, Hyalomma marginatum, Hyalomma aegyptium, Anopheles claviger, Anopheles hyrcanus, Anopheles maculipennis, Anopheles plumbeus, Anopheles sacharovi)",
 "Country is Georgia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 394 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008744-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmrhq6
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neogoniolithon hauckii"
 ]
}

 The dataset includes 105 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008745-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfmexc
title: Occurrence Download

description: A dataset containing 1180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Conger conger"
 ]
}

 The dataset includes 1180 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008742-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfwgb5
title: Occurrence Download

description: A dataset containing 14859 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Bothriochloa macra"
 ]
}

 The dataset includes 14859 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008743-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17042358
title: High-Resolution Global Streamflow Dataset from 1980 - 2020 for 2.94 Million Rivers Using the Physics-Embedded δHBV2–δMC2 Model

description: This dataset provides global-scale streamflow simulations generated with the physics-embedded, high-resolution δHBV2–δMC2 model, developed by the Multi-scale Hydrology, Processes, and Intelligence (MHPI) team at The Pennsylvania State University, led by Dr. Chaopeng Shen’s Hydrologic Deep Learning and Modeling group. This data is provided as is, and we do not assume any responsibility as a result of the use of this data.

This dataset is a direct outcome of Ji et al. (2025), as described below, and has been continuously maintained and updated by Haoyu Ji. In this version, the training period is extended beyond the original 1980–2000 period to include 2001–2020, resulting in improved performance for datasets itself. This Zenodo repository provides continent-based simulation files organized by different MERIT zones. 

Please cite these two papers if you find the data to be of use and refer to the Zenodo main DOI (10.5281/zenodo.17042358) rather than the HydroShare link when acknowledging the data source:

Ji, Haoyu, Yalan Song, Tadd Bindas, Chaopeng Shen*, Yuan Yang, Ming Pan, Jiangtao Liu, Farshid Rahmani, Ather Abbas, Hylke Beck, Kathryn Lawson and Yoshihide Wada (2025). Distinct hydrologic response patterns and trends worldwide revealed by physics-embedded learning. Nature Communications, doi.org/10.1038/s41467-025-64367-1

Song, Yalan, Tadd Bindas, Chaopeng Shen*, Haoyu Ji, Wouter J. M. Knoben, Leo Lonzarich, Martyn P. Clark, Jiangtao Liu, Katie van Werkhoven, Sam Lemont, Matthew Denno, Ming Pan, Yuan Yang, Jeremy Rapp, Mukesh Kumar, Farshid Rahmani, Cyril Thébault, Richard Adkins, James Halgren, Trupesh Patel, Arpita Patel, Kamlesh Sawadekar, and Kathryn Lawson (2025). High-resolution national-scale water modeling is enhanced by multiscale differentiable physics-informed machine learning. Water Resources Research, doi: 10.1029/2024WR038928

More information on our research group and publications can be found at www.mhpi.info, and our publicly-available codes are also available on Github at www.github.com/mhpi. A wiki with summaries, benchmarks, and more information is available at https://mhpi.github.io.

To facilitate data access, the global river network has been partitioned into zones based on the MERIT Flowlines framework. Users can download subsets corresponding to their regions of interest. The MERIT basin delineations are available at: https://www.reachhydro.org/home/params/merit-basins.Note: The model simulates other variables like ET, soil moisture and snow water equivalent, etc., but are not evaluated. If you are interested, please let us know. we can also provide the near-real-time simulation (from 2021 - now) upon request. See the README file for more information.