cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25111610.v1
title: GDP per capita levels for regions and countries in Europe and North America, 1300-2000

description: We publish our out-of-sample estimates on historical GDP per capita levels between the years 1300 and 2000 together with the collected source data on countries and regions in a comprehensive dataset comprising 5,690 observations (1,313 source data observations, and 4,377 out-of-sample estimates). All references to the source data are provided in the manuscript.Locations refer to NUTS-2 regions in Europe (2021 edition), metro- and micropolitan statistical areas for the United States, metropolitan areas for Canada, and regions of similar size for other countries, e.g. oblasts in Russia. For countries, we use ISO 3166-1 alpha-3 country codes.The column <i>GDPpc</i> is denoted in 2011 USD PPP, matching the unit provided in the Maddison project. The column <i>flag</i> describes whether the value in column <i>GDPpc</i> is taken from source data (see manuscript for references) or an out-of-sample estimate. If it is an out-of-sample estimate, the columns <i>GDPpc_lower</i> and <i>GDPpc_upper</i> provide 90 percent confidence intervals obtained by bootstrapping.The code to generate all estimates will be published soon to ensure reproducibility of results.
DOI: 10.6084/m9.figshare.25111610.v2
title: GDP per capita levels for regions and countries in Europe and North America, 1300-2000

description: We publish our out-of-sample estimates on historical GDP per capita levels between the years 1300 and 2000 together with the collected source data on countries and regions in a comprehensive dataset comprising 5,690 observations (1,313 source data observations, and 4,377 out-of-sample estimates). All references to the source data are provided in the manuscript.Locations refer to NUTS-2 regions in Europe (2021 edition), metro- and micropolitan statistical areas for the United States, metropolitan areas for Canada, and regions of similar size for other countries, e.g. oblasts in Russia. For countries, we use ISO 3166-1 alpha-3 country codes.The column <i>GDPpc</i> is denoted in 2011 USD PPP, matching the unit provided in the Maddison project. The column <i>flag</i> describes whether the value in column <i>GDPpc</i> is taken from source data (see manuscript for references) or an out-of-sample estimate. If it is an out-of-sample estimate, the columns <i>GDPpc_lower</i> and <i>GDPpc_upper</i> provide 90 percent confidence intervals obtained by bootstrapping.The code to generate all estimates will be published soon to ensure reproducibility of results.
DOI: 10.5281/zenodo.10599388
title: Dataset related to article: Fluorescein-guided resection of a left frontal pre-rolandic cerebral metastasis: how I do it

description: clinical data
DOI: 10.5281/zenodo.10599389
title: Dataset related to article: Fluorescein-guided resection of a left frontal pre-rolandic cerebral metastasis: how I do it

description: clinical data
DOI: 10.5281/zenodo.7456803
title: WormSwin: C. elegans Video Datasets

description: Data used for our paper "WormSwin: Instance Segmentation of C. elegans using Vision Transformer".This publication is divided into three parts:



CSB-1 Dataset

Synthetic Images Dataset

MD Dataset


The CSB-1 Dataset consists of frames extracted from videos of Caenorhabditis elegans (C. elegans) annotated with binary masks. Each C. elegans is separately annotated, providing accurate annotations even for overlapping instances. All annotations are provided in binary mask format and as COCO Annotation JSON files (see COCO website).

The videos are named after the following pattern:

<"worm age in hours"_"mutation"_"irradiated (binary)"_"video index (zero based)">

For mutation the following values are possible: 



wild type

csb-1 mutant

csb-1 with rescue mutation


An example video name would be 24_1_1_2 meaning it shows C. elegans with csb-1 mutation, being 24h old which got irradiated.

Video data was provided by M. Rieckher; Instance Segmentation Annotations were created under supervision of K. Bozek and M. Deserno.The Synthetic Images Dataset was created by cutting out C. elegans (foreground objects) from the CSB-1 Dataset and placing them randomly on background images also taken from the CSB-1 Dataset. Foreground objects were flipped, rotated and slightly blurred before placed on the background images.The same was done with the binary mask annotations taken from CSB-1 Dataset so that they match the foreground objects in the synthetic images. Additionally, we added rings of random color, size, thickness and position to the background images to simulate petri-dish edges.

This synthetic dataset was generated by M. Deserno.The Mating Dataset (MD) consists of 450 grayscale image patches of 1,012 x 1,012 px showing C. elegans with high overlap, crawling on a petri-dish.We took the patches from a 10 min. long video of size 3,036 x 3,036 px. The video was downsampled from 25 fps to 5 fps before selecting 50 random frames for annotating and patching.Like the other datasets, worms were annotated with binary masks and annotations are provided as COCO Annotation JSON files.

The video data was provided by X.-L. Chu; Instance Segmentation Annotations were created under supervision of K. Bozek and M. Deserno.

Further details about the datasets can be found in our paper.
description: Maurice Deserno and Katarzyna Bozek were supported by the North Rhine-Westphalia return program (311-8.03.03.02-147635), BMBF program Junior Group Consortia in Systems Medicine (01ZX1917B) and hosted by the Center for Molecular Medicine Cologne.
DOI: 10.5281/zenodo.7456802
title: WormSwin: C. elegans Video Datasets

description: Data used for our paper "WormSwin: Instance Segmentation of C. elegans using Vision Transformer".This publication is divided into three parts:



CSB-1 Dataset

Synthetic Images Dataset

MD Dataset


The CSB-1 Dataset consists of frames extracted from videos of Caenorhabditis elegans (C. elegans) annotated with binary masks. Each C. elegans is separately annotated, providing accurate annotations even for overlapping instances. All annotations are provided in binary mask format and as COCO Annotation JSON files (see COCO website).

The videos are named after the following pattern:

<"worm age in hours"_"mutation"_"irradiated (binary)"_"video index (zero based)">

For mutation the following values are possible: 



wild type

csb-1 mutant

csb-1 with rescue mutation


An example video name would be 24_1_1_2 meaning it shows C. elegans with csb-1 mutation, being 24h old which got irradiated.

Video data was provided by M. Rieckher; Instance Segmentation Annotations were created under supervision of K. Bozek and M. Deserno.The Synthetic Images Dataset was created by cutting out C. elegans (foreground objects) from the CSB-1 Dataset and placing them randomly on background images also taken from the CSB-1 Dataset. Foreground objects were flipped, rotated and slightly blurred before placed on the background images.The same was done with the binary mask annotations taken from CSB-1 Dataset so that they match the foreground objects in the synthetic images. Additionally, we added rings of random color, size, thickness and position to the background images to simulate petri-dish edges.

This synthetic dataset was generated by M. Deserno.The Mating Dataset (MD) consists of 450 grayscale image patches of 1,012 x 1,012 px showing C. elegans with high overlap, crawling on a petri-dish.We took the patches from a 10 min. long video of size 3,036 x 3,036 px. The video was downsampled from 25 fps to 5 fps before selecting 50 random frames for annotating and patching.Like the other datasets, worms were annotated with binary masks and annotations are provided as COCO Annotation JSON files.

The video data was provided by X.-L. Chu; Instance Segmentation Annotations were created under supervision of K. Bozek and M. Deserno.

Further details about the datasets can be found in our paper.
description: Maurice Deserno and Katarzyna Bozek were supported by the North Rhine-Westphalia return program (311-8.03.03.02-147635), BMBF program Junior Group Consortia in Systems Medicine (01ZX1917B) and hosted by the Center for Molecular Medicine Cologne.
DOI: 10.34740/kaggle/dsv/7520636
title: 2021 World Population (updated daily)
DOI: 10.34740/kaggle/dsv/7520656
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.10599380
title: Sverdlovsk UFSIN News Crawl Pt.3

description: WARC files produced by a webcrawl of Sverdlovsk UFSIN news online resource. WARC reader is necessary to view files.
DOI: 10.5281/zenodo.10599381
title: Sverdlovsk UFSIN News Crawl Pt.3

description: WARC files produced by a webcrawl of Sverdlovsk UFSIN news online resource. WARC reader is necessary to view files.
DOI: 10.5281/zenodo.10599453
title: Dataset related to article: The Application of Sodium Fluorescein in Resection of Medulloblastoma Under YELLOW 560 Filter: Feasibility and Preliminary Results of a Monocentric Cohort and Systematic Review

description: clinical data
DOI: 10.5281/zenodo.10599454
title: Dataset related to article: The Application of Sodium Fluorescein in Resection of Medulloblastoma Under YELLOW 560 Filter: Feasibility and Preliminary Results of a Monocentric Cohort and Systematic Review

description: clinical data
DOI: 10.25838/d5p-61
title: Petersilie et al. 2024 - Figure 6
title: Cortical brain organoid slices (cBOS) as a functional model system to study human neural cells in intact minimal networks

description: Brain organoids derived from human pluripotent stem cells are a promising tool for studying human neurodevelopment and related disorders. Here, we generated long-term cultures of cortical brain organoid slices (cBOS) grown at the air-liquid interphase from regionalized cortical organoids. We show that cBOS host mature neurons and astrocytes organized in complex architecture. Whole-cell patch clamp demonstrated subthreshold synaptic inputs and action potential firing of neurons. Spontaneous intracellular calcium signals turned into synchronous large-scale oscillations upon combined disinhibition of NMDA receptors and blocking of GABAA receptors. Brief metabolic inhibition to mimic transient energy restriction in the ischemic brain induced reversible intracellular calcium loading of cBOS. Moreover, metabolic inhibition induced a reversible decline in neuronal ATP as revealed by ATeam1.03YEMK. Overall, cBOS provide a powerful platform to assess morphological and functional aspects of human neural cells in intact minimal networks and to address the pathways that drive cellular damage during brain ischemia.
DOI: 10.17028/rd.lboro.25117982
title: Supplementary information files for Terahertz Spatiotemporal Wave Synthesis in Random Systems

description: © the Authors CC BY 4.0Supplementary files for article Terahertz spatiotemporal wave synthesis in random systemsComplex media have emerged as a powerful and robust framework to control light–matter interactions designed for task-specific optical functionalities. Studies on wavefront shaping through disordered systems have demonstrated optical wave manipulation capabilities beyond conventional optics, including aberration-free and subwavelength focusing. However, achieving arbitrary and simultaneous control over the spatial and temporal features of light remains challenging. In particular, no practical solution exists for field-level arbitrary spatiotemporal control of wave packets. A new paradigm shift has emerged in the terahertz frequency domain, offering methods for absolute time-domain measurements of the scattered electric field, enabling direct field-based wave synthesis. In this work, we report the experimental demonstration of field-level control of single-cycle terahertz pulses on arbitrary spatial points through complex disordered media.
DOI: 10.17028/rd.lboro.25117982.v1
title: Supplementary information files for Terahertz Spatiotemporal Wave Synthesis in Random Systems

description: © the Authors CC BY 4.0Supplementary files for article Terahertz spatiotemporal wave synthesis in random systemsComplex media have emerged as a powerful and robust framework to control light–matter interactions designed for task-specific optical functionalities. Studies on wavefront shaping through disordered systems have demonstrated optical wave manipulation capabilities beyond conventional optics, including aberration-free and subwavelength focusing. However, achieving arbitrary and simultaneous control over the spatial and temporal features of light remains challenging. In particular, no practical solution exists for field-level arbitrary spatiotemporal control of wave packets. A new paradigm shift has emerged in the terahertz frequency domain, offering methods for absolute time-domain measurements of the scattered electric field, enabling direct field-based wave synthesis. In this work, we report the experimental demonstration of field-level control of single-cycle terahertz pulses on arbitrary spatial points through complex disordered media.
DOI: 10.5519/qd.ka6sb7e7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (31837 records)
DOI: 10.17617/4.eg
title: Anti-PEG antibodies enriched in the protein corona of PEGylated nanocarriers impact the cell uptake

description: Deuker, M. F. S., Mailänder, V., Morsbach, S., & Landfester, K. (2023). Anti-PEG antibodies enriched in the protein corona of PEGylated nanocarriers impact the cell uptake. Nanoscale Horizons, 8(10), 1377-1385. doi:10.1039/D3NH00198A.
DOI: 10.5281/zenodo.10599544
title: Dataset related to article: What have we learned in fluorescein-guided resection of brain metastases? An update after 79 consecutive cases

description: clinical data
DOI: 10.5281/zenodo.10599545
title: Dataset related to article: What have we learned in fluorescein-guided resection of brain metastases? An update after 79 consecutive cases

description: clinical data
DOI: 10.6084/m9.figshare.25118201
title: Supplementary Material for: Comprehensive Treatment of a Rare Case of Complete Primary Pachydermoperiostosis with Large Facial Keloid Scars: A Case Report and Literature Review

description: Introduction: Pachydermoperiostosis (PDP), or primary hypertrophic osteoarthropathy, is a rare autosomal dominant disease with primary clinical features of pachydermia (thickening of skin) and periostosis (new bone formation). Keloid scar formation is also rather obscure, and some scientists have claimed that keloid scars contain an excessive amount of fibroblasts compared with normal skin as well as a dense mass of irregularly deposited connective tissues. 

Case Presentation: A 25-year-old man exhibited extensive skin folding on his face, a gyrus-like scalp, depressed nasolabial folds, and keloids. Symptoms began at 18 years of age, progressing insidiously. Additionally, he experienced clubbing of fingers and toes, joint pain, muscle soreness, and hyperhidrosis. Radiographic examinations revealed thickened bone and cystic regions. Diagnosed with complete primary PDP and facial keloid scars, he underwent skin dermabrasion, biopsies, and a comprehensive treatment involving, botulinum toxin injections, 5-fluorouracil, and a carbon dioxide lattice laser.

Conclusion: PDP presents challenges due to its unclear etiology, but stabilizes over time in most cases. Comprehensive treatment strategies, including dermabrasion and a combination of intralesional therapies, are effective in managing keloids in PDP patients. This case contributes to the understanding of managing rare diseases and underscores the importance of personalized approaches to improve therapeutic outcomes in patients with complete primary PDP and concurrent keloids.
DOI: 10.6084/m9.figshare.25118201.v1
title: Supplementary Material for: Comprehensive Treatment of a Rare Case of Complete Primary Pachydermoperiostosis with Large Facial Keloid Scars: A Case Report and Literature Review

description: Introduction: Pachydermoperiostosis (PDP), or primary hypertrophic osteoarthropathy, is a rare autosomal dominant disease with primary clinical features of pachydermia (thickening of skin) and periostosis (new bone formation). Keloid scar formation is also rather obscure, and some scientists have claimed that keloid scars contain an excessive amount of fibroblasts compared with normal skin as well as a dense mass of irregularly deposited connective tissues. 

Case Presentation: A 25-year-old man exhibited extensive skin folding on his face, a gyrus-like scalp, depressed nasolabial folds, and keloids. Symptoms began at 18 years of age, progressing insidiously. Additionally, he experienced clubbing of fingers and toes, joint pain, muscle soreness, and hyperhidrosis. Radiographic examinations revealed thickened bone and cystic regions. Diagnosed with complete primary PDP and facial keloid scars, he underwent skin dermabrasion, biopsies, and a comprehensive treatment involving, botulinum toxin injections, 5-fluorouracil, and a carbon dioxide lattice laser.

Conclusion: PDP presents challenges due to its unclear etiology, but stabilizes over time in most cases. Comprehensive treatment strategies, including dermabrasion and a combination of intralesional therapies, are effective in managing keloids in PDP patients. This case contributes to the understanding of managing rare diseases and underscores the importance of personalized approaches to improve therapeutic outcomes in patients with complete primary PDP and concurrent keloids.
DOI: 10.5281/zenodo.4317959
title: Twenty-two Historical Encyclopedias Encoded in TEI: a New Resource for the Digital Humanities

description: Dataset described in "Twenty-two Historical Encyclopedias Encoded in TEI: a New Resource for the Digital Humanities". These German encyclopedias have been uniformely annotated with a variant of TEI Lex-0. See the transformation code at GitHub. Licensed as CC-BY.
DOI: 10.5281/zenodo.4039569
title: Twenty-two Historical Encyclopedias Encoded in TEI: a New Resource for the Digital Humanities

description: Dataset described in "Twenty-two Historical Encyclopedias Encoded in TEI: a New Resource for the Digital Humanities". These German encyclopedias have been uniformly annotated with a variant of TEI Lex-0. See the transformation code at GitHub.


Licensed as CC-BY.
DOI: 10.5281/zenodo.4039570
title: Twenty-two Historical Encyclopedias Encoded in TEI: a New Resource for the Digital Humanities

description: Dataset described in "Twenty-two Historical Encyclopedias Encoded in TEI: a New Resource for the Digital Humanities". These German encyclopedias have been uniformely annotated with a variant of TEI Lex-0. See the transformation code at GitHub. Licensed as CC-BY.
DOI: 10.5281/zenodo.4554112
title: Twenty-two Historical Encyclopedias Encoded in TEI: a New Resource for the Digital Humanities

description: Dataset described in "Twenty-two Historical Encyclopedias Encoded in TEI: a New Resource for the Digital Humanities". These German encyclopedias have been uniformly annotated with a variant of TEI Lex-0. See the transformation code at GitHub.


Licensed as CC-BY.
DOI: 10.5281/zenodo.10410505
title: Genome-wide QTL mapping across three tissues highlights several Alzheimer's and Parkinson's disease loci potentially acting via DNA methylation: Summary statistics

description: This dataset contains a full release of summary statistics and other results for the project entitled "Genome-wide QTL mapping across three tissues highlights several Alzheimer's and Parkinson's disease loci potentially acting via DNA methylation". A paper describing this work is available as preprint on medRxiv (https://www.medrxiv.org/content/10.1101/2023.12.22.23300365v1). We kindly request that you cite this preprint in projects utilizing the data posted here. As soon as the manuscript is accepted for publication in a peer-reviewed journal, this dataset description will be updated.

The dataset contains three sets of results:

1) Summary statistics for meQTL GWAS analyses in blood, buccal and saliva tissue (for SNP-CpG pairs with p<1E-14).

2) Results from summary data based Mendelian randomization (SMR) analyses linking the results from #1) with recent risk GWAS for Alzheimer's disease (AD) and Parkinson's disease (PD).

3) Results from two-sample Mendelian randomization (2MR) analyses linking DNAm and risk for AD/PD for loci prioritized in #2).

All genomic positions provided in these files are based on human genome build GRCh37/hg19. For more details on these results and how they were generated, please see the publication referenced above.
DOI: 10.5281/zenodo.10410506
title: Genome-wide QTL mapping across three tissues highlights several Alzheimer's and Parkinson's disease loci potentially acting via DNA methylation: Summary statistics

description: This dataset contains a full release of summary statistics and other results for the project entitled "Genome-wide QTL mapping across three tissues highlights several Alzheimer's and Parkinson's disease loci potentially acting via DNA methylation". A paper describing this work is available as preprint on medRxiv (https://www.medrxiv.org/content/10.1101/2023.12.22.23300365v1). We kindly request that you cite this preprint in projects utilizing the data posted here. As soon as the manuscript is accepted for publication in a peer-reviewed journal, this dataset description will be updated.

The dataset contains three sets of results:

1) Summary statistics for meQTL GWAS analyses in blood, buccal and saliva tissue (for SNP-CpG pairs with p<1E-14).

2) Results from summary data based Mendelian randomization (SMR) analyses linking the results from #1) with recent risk GWAS for Alzheimer's disease (AD) and Parkinson's disease (PD).

3) Results from two-sample Mendelian randomization (2MR) analyses linking DNAm and risk for AD/PD for loci prioritized in #2).

All genomic positions provided in these files are based on human genome build GRCh37/hg19. For more details on these results and how they were generated, please see the publication referenced above.
DOI: 10.6084/m9.figshare.25118159
title: The Thr92Ala polymorphism in the Type 2 deiodinase gene is linked to depression in COVID-19 patients after hospital discharge

description: <b>Background: </b>The Thr92Ala-DIO2 polymorphism has been associated with clinical outcomes in hospitalized COVID-19 patients and neuropsychiatric diseases. This study examines the impact of the Thr92Ala-DIO2 polymorphism on neuropsychological symptoms, particularly depressive symptoms, in patients who have had moderate to severe SARS-CoV-2 infection and were later discharged. <b>Methods: </b>Our prospective cohort study, conducted from June to August 2020, collected data from 273 patients hospitalized with COVID-19. This included thyroid function tests, inflammatory markers, hematologic indices, and genotyping of the Thr92Ala-DIO2 polymorphism. Post-discharge, we followed up with 68 patients over 30 to 45 days, dividing them into depressive (29 patients) and non-depressive (39 patients) groups based on their Beck Depression Inventory scores. <b>Results: </b>We categorized 68 patients into three groups based on their genotypes: Thr/Thr (22 patients), Thr/Ala (41 patients), and Ala/Ala (5 patients). Depressive symptoms were found to be less common in the Thr/Ala group (29.3%) compared to the Thr/Thr (59.1%) and Ala/Ala (60%) groups (p = 0.048). The Thr/Ala heterozygous genotype correlated with a lower risk of post-COVID-19 depression, as shown by univariate and multivariate logistic regression analyses. These analyses, adjusted for various factors, indicated a 70% to 81% reduction in risk. <b>Conclusion: </b>Our findings appear to be the first to show that heterozygosity for Thr92Ala-DIO2 in COVID-19 patients may protect against post-COVID-19 depression symptoms up to two months after the illness.