cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1g1jwsv2b
title: Data from: Cover cropping history affects cotton boll distribution, lint yields, and fiber quality

description: This is digital research data corresponding to a published manuscript,
 Cover cropping history affects cotton boll distribution, lint yields, and
 fiber quality, in Crop Science, Vol. 63 p. 1209–1220.  There has
 been limited introduction of new cover crop species into cotton (Gossypium
 hirsutum L.) production within the last 30 years. Mounting evidence shows
 that traditional cover cropping species may be detrimental to cotton
 production, either by depleting soil fertility with crop removal,
 immobilizing minerals from high carbon residue, or excessive quantity of
 residue remaining at planting. The objective of this study was to
 determine the effects of growing a novel cover crop species, carinata
 (Brassica carinata A. Braun), as a winter annual cover crop for cotton
 rotation in the southeastern Coastal Plain. Over a 2-year period,
 carinata, winter wheat (Triticum aestivum L.), and fallow covers were
 maintained over winter months, then rotated into cotton. Each year,
 seedcotton and lint yields were collected, along with subsamples for
 ginning and subsequent fiber quality analyses. Additionally, end-of-season
 plant mapping was conducted on plants from 1-m of row per plot to
 determine cover crop effects on boll formation, retention, and
 distribution, as well as canopy architecture.
description: Methods are detailed in the published manuscript: https://doi.org/10.1002/csc2.20931
description: The README file requires MS Word to view. The dataset requires MS
 Excel to view.
DOI: 10.15468/dl.d67cqh
title: Occurrence Download

description: A dataset containing 55179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Galinsoga parviflora",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2026"
 ]
}

 The dataset includes 55179 records from 756 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003512-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13019/m0yz-hk74
title: Structural data and thermometry indicate that the Tso Morari UHP nappe (Indian Himalaya) was emplaced as a large-scale, structurally coherent sheet

description: &lt;p style="text-indent:.5in"&gt;&lt;span style="font-size:11pt"&gt;&lt;span style="line-height:150%"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="font-size:12.0pt"&gt;&lt;span style="line-height:150%"&gt;&lt;span new="" roman="" style="font-family:" times=""&gt;We measured peak metamorphic temperatures using Raman spectroscopy of carbonaceous material (RSCM) thermometry, and we collected quartz crystallographic preferred-orientation (CPO), thin section-scale finite strain, and shear‐sense datasets from samples collected along these transects. We integrate new and published data to resolve spatial trends in peak and deformation temperature, finite strain magnitude, the intensity of CPO development, and kinematics across the length, width, and height of the TMN. Our work builds upon the temperature and structural datasets of Long et al. (2020) to provide a comprehensive investigation that spans the full spatial extent of the TMN. Whereas our previous work focused on the TMN exhumation history, the present study focuses on TMN emplacement. We go on to explore the implications of these datasets for testing published model predictions for the construction of UHP terranes, and for elucidating the structural and metamorphic evolution of the TMN.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
description: In this paper, our goal is to improve understanding of the structural processes that construct UHP terranes, especially their emplacement, using the Tso Morari nappe in NW India as a case study.
DOI: 10.15468/dl.7g8uxb
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Vespula intermedia"
 ]
}

 The dataset includes 40 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005663-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44wszv
title: Occurrence Download

description: A dataset containing 475 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ackama paniculosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 475 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005665-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kshxje
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myrica cerifera"
 ]
}

 The dataset includes 290 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005664-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18451095
title: Simulated multi-omics datasets based on ovarian cancer (generated with InterSIM R library)

description: This dataset contains synthetic multi-omics data generated using the InterSIM R package. The simulations produce three omics layers, gene expression, DNA methylation, and protein expression, with cluster overlap controlled by an "effect size" parameter.

Each simulation is parameterised by a random seed (controlling reproducibility) and an effect size (controlling the degree of separation between clusters). Twenty effect sizes are tested per seed, ranging from 0.1 (minimal cluster separation) to 2.0 (maximal cluster separation) in increments of 0.1. A total of 30 seeds are used (43–62 and 73–82), yielding 600 simulation combinations in total.

File contents



expr.csv — Simulated gene expression data matrix (samples × genes).

methyl.csv — Simulated DNA methylation data matrix (samples × CpG sites).

protein.csv — Simulated protein abundance data matrix (samples × proteins).

labels.csv — Cluster membership labels assigned to each sample by the simulation.

pca_expr.png — PCA plot of the gene expression layer.

pca_methyl.png — PCA plot of the DNA methylation layer.

pca_protein.png — PCA plot of the protein abundance layer.


Each PCA plot visualises the cluster structure induced by the specified effect size for the corresponding omics layer.

Folder structure

root/
├── seed43/
│   ├── effect_0.1/
│   │   ├── expr.csv
│   │   ├── labels.csv
│   │   ├── methyl.csv
│   │   ├── protein.csv
│   │   ├── pca_expr.png
│   │   ├── pca_methyl.png
│   │   └── pca_protein.png
│   ├── effect_0.2/
│   │   ├── expr.csv
│   │   ├── labels.csv
│   │   ├── methyl.csv
│   │   ├── protein.csv
│   │   ├── pca_expr.png
│   │   ├── pca_methyl.png
│   │   └── pca_protein.png
│   ├── ...
│   └── effect_2.0/
│       ├── expr.csv
│       ├── labels.csv
│       ├── methyl.csv
│       ├── protein.csv
│       ├── pca_expr.png
│       ├── pca_methyl.png
│       └── pca_protein.png
├── seed44/
│   └── ...
├── ...
├── seed62/
│   └── ...
├── seed73/
│   └── ...
└── seed82/
    └── ...


Generation

All data were simulated using the InterSIM package in R.

Chalise P, Raghavan R, Fridley BL. InterSIM: Simulation tool for multiple integrative 'omic datasets'. Comput Methods Programs Biomed. 2016 May;128:69-74. doi: 10.1016/j.cmpb.2016.02.011. Epub 2016 Feb 27. PMID: 27040832; PMCID: PMC4833453.

License

CC0 1.0 Universal (public domain dedication)
DOI: 10.5281/zenodo.18451096
title: Simulated multi-omics datasets based on ovarian cancer (generated with InterSIM R library)

description: This dataset contains synthetic multi-omics data generated using the InterSIM R package. The simulations produce three omics layers, gene expression, DNA methylation, and protein expression, with cluster overlap controlled by an "effect size" parameter.

Each simulation is parameterised by a random seed (controlling reproducibility) and an effect size (controlling the degree of separation between clusters). Twenty effect sizes are tested per seed, ranging from 0.1 (minimal cluster separation) to 2.0 (maximal cluster separation) in increments of 0.1. A total of 30 seeds are used (43–62 and 73–82), yielding 600 simulation combinations in total.

File contents



expr.csv — Simulated gene expression data matrix (samples × genes).

methyl.csv — Simulated DNA methylation data matrix (samples × CpG sites).

protein.csv — Simulated protein abundance data matrix (samples × proteins).

labels.csv — Cluster membership labels assigned to each sample by the simulation.

pca_expr.png — PCA plot of the gene expression layer.

pca_methyl.png — PCA plot of the DNA methylation layer.

pca_protein.png — PCA plot of the protein abundance layer.


Each PCA plot visualises the cluster structure induced by the specified effect size for the corresponding omics layer.

Folder structure

root/
├── seed43/
│   ├── effect_0.1/
│   │   ├── expr.csv
│   │   ├── labels.csv
│   │   ├── methyl.csv
│   │   ├── protein.csv
│   │   ├── pca_expr.png
│   │   ├── pca_methyl.png
│   │   └── pca_protein.png
│   ├── effect_0.2/
│   │   ├── expr.csv
│   │   ├── labels.csv
│   │   ├── methyl.csv
│   │   ├── protein.csv
│   │   ├── pca_expr.png
│   │   ├── pca_methyl.png
│   │   └── pca_protein.png
│   ├── ...
│   └── effect_2.0/
│       ├── expr.csv
│       ├── labels.csv
│       ├── methyl.csv
│       ├── protein.csv
│       ├── pca_expr.png
│       ├── pca_methyl.png
│       └── pca_protein.png
├── seed44/
│   └── ...
├── ...
├── seed62/
│   └── ...
├── seed73/
│   └── ...
└── seed82/
    └── ...


Generation

All data were simulated using the InterSIM package in R.

Chalise P, Raghavan R, Fridley BL. InterSIM: Simulation tool for multiple integrative 'omic datasets'. Comput Methods Programs Biomed. 2016 May;128:69-74. doi: 10.1016/j.cmpb.2016.02.011. Epub 2016 Feb 27. PMID: 27040832; PMCID: PMC4833453.

License

CC0 1.0 Universal (public domain dedication)
DOI: 10.15468/vgumrg
title: University of Washington, Bothell Vascular Plant Herbarium

description: Vascular plants of the University of Washington, Bothell Herbarium.
DOI: 10.15468/465suw
title: Eastern Washington University Herbarium Vascular Plants.

description: Vascular plants of the Eastern Washington University Herbarium.
DOI: 10.15468/rt58ad
title: U.S. Bureau of Land Management, Medford District (Oregon) Bryophytes

description: U.S. Bureau of Land Management, Medford District (Oregon) bryophytes.
DOI: 10.15468/q3fvwb
title: Southern Oregon University Herbarium

description: Vascular plants of the Southern Oregon University Herbarium.
DOI: 10.15468/taw892
title: Pacific Northwest Herbarium (Western Washington University, Washington, USA)

description: Vascular plants.
DOI: 10.15468/2dk9zx
title: Linfield College Herbarium Vascular Plants

description: Linfield College Herbarium vascular plant specimens.
DOI: 10.15468/a4ez3z
title: University of Washington Herbarium (WTU) - Algae Collection

description: The majority of the collection is marine algae, with a geographic emphasis on the Pacific Northwest. Collection is global in geographic scope.
DOI: 10.15468/62z3c6
title: The Israeli Oak Association

description: The Israel Oaks Association was founded by Ezra Barnea, Ardyn Halter, Prof. Nurit Lissovsky, Amir Trifman, Dr. Yair Lifshitz, Dr. Idan Kopler and Dr. Omri Boneh, seven people from different backgrounds and disciplines who share a passion for oak trees, the environment, and trees' connection to people: a professor of landscape architecture; an industrialist; an ecological researcher; a forestry expert experienced in national forestry programs; an expert in ergonometrics; an artist, and – our chairman – a man with 35 years’ experience of growing oak trees.The aim of the Israel Oak Registry is to identify, measure, and register the location of all oak trees in Israel, wild or planted, including introduced species, that have a diameter of 50 cm or more. The project is intended to serve the tourist, hiker, research person, nature and tree lover, and anyone who has a passion for oak trees.
DOI: 10.15468/9veyrm
title: University of Puget Sound, Slater Museum Herbarium Vascular Plants

description: University of Puget Sound, Slater Museum Herbarium vascular plant specimens.
DOI: 10.15468/5qa753
title: Portland State University Herbarium Bryophytes

description: Portland State University Herbarium bryophytes.
DOI: 10.15468/pn4pm2
title: Portland State University Herbarium Lichens

description: Portland State University Herbarium lichens.
DOI: 10.15468/tr3eez
title: Rocky Mountain Research Station (Boise, Idaho, USA), USDA Forest Service Herbarium Vascular Plants

description: Vascular plants of the Rocky Mountain Research Station, USDA Forest Service Herbarium
DOI: 10.15468/vhuhbx
title: Portland State Universtiy Herbarium Vascular Plants

description: Vascular plants of the Portland State University Herbarium.
DOI: 10.15468/5dr8pp
title: Central Oregon Community College

description: Vascular plants of Central Oregon Community College.
DOI: 10.15468/frm54z
title: University of Idaho, Stillinger Herbarium Nonvascular Plants

description: Nonvascular plants of the University of Idaho, Stillinger Herbarium.
DOI: 10.15468/wrupbt
title: Twin Falls, Idaho Bureau of Land Management Vascular Plant Herbarium

description: Vascular plants of the Twin Falls, Idaho Bureau of Land Management Herbarium.
DOI: 10.15468/pa5ddk
title: Whitman College Herbarium Vascular Plants

description: Whitman College Herbarium vascular plants.
DOI: 10.15468/u4zygh
title: Reed College Vascular Plant Herbarium

description: Vascular plants of Reed College Herbarium
DOI: 10.15468/5d2t7d
title: North Cascades National Park (USA) Herbarium Vascular Plants

description: Vascular plants of the North Cascades National Park (USA) Herbarium.
DOI: 10.15468/dl.uzrtt4
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ackama rosifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 135 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005668-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/b7x6fn
title: University of Washington Herbarium (WTU) - Lichen Collection

description: Lichenized fungi.
DOI: 10.15468/nu8kw5
title: Snake River Plain Herbarium (Boise State University, Idaho, USA)

description: Snake River Plain Herbarium (Boise State University, Idaho, USA).
DOI: 10.15468/7v5zvb
title: Washington State University Herbarium

description: Washington State University Herbarium vascular plants.
DOI: 10.15468/8htpvx
title: University of Idaho, Stillinger Herbarium Vascular Plants

description: Vascular plants of the University of Idaho, Stillinger Herbarium.
DOI: 10.15468/4u2dpx
title: Pacific Lutheran University Vascular Plants

description: Vascular plants of the Pacific Lutheran University Herbarium.
DOI: 10.15468/p5554y
title: Idaho State University, Ray J. Davis Herbarium Vascular Plants

description: Vascular plants of Idaho State University's Ray J. Davis Herbarium.
DOI: 10.15468/3vu64d
title: Bureau of Land Management Medford District (Oregon) Lichens

description: Lichen specimens from U.S. Bureau of Land Management, Medford District (Oregon)
DOI: 10.15468/dm598q
title: University of Montana Herbarium

description: Vascular plants of the University of Montana Herbarium.
DOI: 10.15468/qm2h6n
title: College of Idaho Herbarium

description: College of Idaho Herbarium.
DOI: 10.15468/dl.hbay2m
title: Occurrence Download

description: A dataset containing 53336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Rwanda",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 53336 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005655-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkcvqu
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acrophyllum australe",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 129 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005669-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kt9gse
title: Occurrence Download

description: A dataset containing 2687 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Penstemon campanulatus"
 ]
}

 The dataset includes 2687 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005670-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18451596
title: IT-OT_Integration_PRISMA-ScR_Scoping_Review_Data_95_Studies

description: Data Extraction Records and Analysis from PRISMA-ScR Scoping Review: IT/OT Integration Architectures and Semantic Interoperability

This dataset contains the complete data extraction records from a systematic scoping review of 95 peer-reviewed studies on IT/OT integration architectures, conducted following PRISMA-ScR guidelines. The review examined literature published between 2017–2025 from SCOPUS, IEEE Xplore, and Web of Science.

Contents:- Data extraction table: 95 included studies with title, year, DOI, ID and connectivity profile classification- Extracted variables: communication protocols (MQTT, OPC UA, Modbus, EtherCAT),   data flow patterns, semantic mechanisms (AAS, ontologies), and validation approaches- Longitudinal analysis graphs: protocol adoption trends, AAS prevalence,   connectivity profile distribution

Keywords: Industry 4.0, IT/OT integration, semantic interoperability, MQTT, Sparkplug B, Asset Administration Shell, Unified Namespace, scoping review, PRISMA-ScR
DOI: 10.5281/zenodo.18451597
title: IT-OT_Integration_PRISMA-ScR_Scoping_Review_Data_95_Studies

description: Data Extraction Records and Analysis from PRISMA-ScR Scoping Review: IT/OT Integration Architectures and Semantic Interoperability

This dataset contains the complete data extraction records from a systematic scoping review of 95 peer-reviewed studies on IT/OT integration architectures, conducted following PRISMA-ScR guidelines. The review examined literature published between 2017–2025 from SCOPUS, IEEE Xplore, and Web of Science.

Contents:- Data extraction table: 95 included studies with title, year, DOI, ID and connectivity profile classification- Extracted variables: communication protocols (MQTT, OPC UA, Modbus, EtherCAT),   data flow patterns, semantic mechanisms (AAS, ontologies), and validation approaches- Longitudinal analysis graphs: protocol adoption trends, AAS prevalence,   connectivity profile distribution

Keywords: Industry 4.0, IT/OT integration, semantic interoperability, MQTT, Sparkplug B, Asset Administration Shell, Unified Namespace, scoping review, PRISMA-ScR
DOI: 10.15468/dl.excput
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aistopetalum viticoides",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 31 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005671-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfbhng
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trimeresurus kuiburi"
 ]
}

 The dataset includes 21 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005672-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26ttm4
title: Occurrence Download

description: A dataset containing 696 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Rhinoclemmys diademata [GBIF Backbone Taxonomy], Kinosternon scorpioides [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 696 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005673-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qu2nw2
title: Occurrence Download

description: A dataset containing 286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anodopetalum biglandulosum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 286 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005675-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csaw5n
title: Occurrence Download

description: A dataset containing 1361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauera rubioides",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1361 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005676-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16737746
title: MRI Raw Data for Phase Pole Correction
DOI: 10.5281/zenodo.18451613
title: MRI Raw Data for Phase Pole Correction
DOI: 10.25919/cvkm-ph60
title: Parkes observations for project PX137 semester 2025OCTS_12

description: Pulsar data from Parkes (Murriyang) Target of Opportunity (ToO) observations
DOI: 10.5281/zenodo.18120485
title: TECHNICAL RAPORT: SYNCHRONOUS PHASE STABILIZATION IN SONOFUSION SYSTEMS (D-D)
title: Sterowalny model fuzji jądrowej

description: LOGIKA
DOI: 10.5281/zenodo.18120486
title: TECHNICAL RAPORT: SYNCHRONOUS PHASE STABILIZATION IN SONOFUSION SYSTEMS (D-D)
title: Sterowalny model fuzji jądrowej

description: LOGIKA
DOI: 10.25919/wk17-6y21
title: Parkes observations for project PX135 semester 2025OCTS_12

description: Pulsar data from Parkes (Murriyang) Target of Opportunity (ToO) observations