cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6340328
title: ELE - Nadal et al 2018 - Dataset.xlsx

description: Data used in the study titled <i>"Possible link between photosynthesis and leaf modulus of elasticity among vascular plants: a new player in leaf traits relationships?" </i>(Nadal et al. 2018 - Ecology Letters). First two sheets display gas exchange and pressure-volume curves-derived parameters (water relations) from previously published studies. The third sheet displays the same parameters (adding others regarding bulk leaf structure and photosynthesis limitations) in the same set of measured plants (grown outdoors at the experimental field of Universitat de les Illes Balears, Spain).<br>ELEFlexasST3 - Corrigendum to previous file: here, limitations to photosynthesis are derived from A/Cc curves -the ones used through the manuscript- and not from punctual measurements at Ca = 400 ppm (as in main file)
DOI: 10.6084/m9.figshare.6340328.v2
title: ELE - Nadal et al 2018 - Dataset.xlsx

description: Data used in the study titled <i>"Possible link between photosynthesis and leaf modulus of elasticity among vascular plants: a new player in leaf traits relationships?" </i>(Nadal et al. 2018 - Ecology Letters). First two sheets display gas exchange and pressure-volume curves-derived parameters (water relations) from previously published studies. The third sheet displays the same parameters (adding others regarding bulk leaf structure and photosynthesis limitations) in the same set of measured plants (grown outdoors at the experimental field of Universitat de les Illes Balears, Spain).<br>ELEFlexasST3 - Corrigendum to previous file: here, limitations to photosynthesis are derived from A/Cc curves -the ones used through the manuscript- and not from punctual measurements at Ca = 400 ppm (as in main file)
DOI: 10.6084/m9.figshare.6340325
title: Supplementary material from Optimization of parameters in cylindrical and surface grinding for improved surface finish

description: Surface integrity has attracted the attention of researchers for improving the functional performance of engineering products. Improvement in surface finish, one of the important parameters in surface integrity, has been attempted by researchers through different processes. Grinding has been widely used for final machining of components requiring smooth surfaces coupled with precise tolerances. Proper selection of grinding wheel material and grade with grinding parameters can result in an improved surface finish and improved surface characteristics. The present work reports the study of the effect of grinding parameters on surface finish of EN8 steel. Experiments were performed on surface grinding and cylindrical grinding for optimization of grinding process parameters for improved surface finish. Grinding wheel speed, depth of cut, table feed, grinding wheel material and table travel speed for surface grinding operation, and work speed for cylindrical grinding operation were taken as the input parameters with four types of grinding wheels (Al<sub>2</sub>O<sub>3</sub> of grades K and L, and white alumina of grades J and K). The surface roughness was taken as an output parameter for experimentation. The grinding wheel material and grade have been observed to be the most significant variables for both cylindrical grinding and surface grinding. Surface roughness in the case of surface grinding is better compared to that of cylindrical grinding, which can be attributed to vibrations produced in the cylindrical grinding attachment. Surface roughness (<i>R</i><sub>a</sub>) values of 0.757 µm in cylindrical grinding and 0.66 µm in surface grinding have been achieved.
DOI: 10.6084/m9.figshare.6340316
title: Plant remains from Corbally 6 Wexford E4857.csv

description: Charred plant remains from Corbally 6 Co. Wexford<br>
DOI: 10.6084/m9.figshare.6340316.v1
title: Plant remains from Corbally 6 Wexford E4857.csv

description: Charred plant remains from Corbally 6 Co. Wexford<br>
DOI: 10.6084/m9.figshare.6339935
title: Z-scores

description: MS Excel table containing Z-scores of all parameters to build the multiparametric phenotypic signatures as described in the main manuscript under Methods, section 'Assembly of phenotypic HC signatures'.
DOI: 10.6084/m9.figshare.6339935.v1
title: Z-scores

description: MS Excel table containing Z-scores of all parameters to build the multiparametric phenotypic signatures as described in the main manuscript under Methods, section 'Assembly of phenotypic HC signatures'.
DOI: 10.6084/m9.figshare.6339905
title: Static Morphology Parameters

description: MS Excel result table containing all parameters of the static organelle morphology analysis as described in the main manuscript under Methods, section 'Data mining in CSV result files and assembly of final EXCEL result tables with KNIME'.
DOI: 10.6084/m9.figshare.6339905.v1
title: Static Morphology Parameters

description: MS Excel result table containing all parameters of the static organelle morphology analysis as described in the main manuscript under Methods, section 'Data mining in CSV result files and assembly of final EXCEL result tables with KNIME'.
DOI: 10.6084/m9.figshare.6339893
title: Dynamic Tracking Parameters

description: MS Excel result table containing all parameters of the dynamic organelle tracking analysis as described in the main manuscript under Methods, section 'Data mining in CSV result files and assembly of final EXCEL result tables with KNIME'.
DOI: 10.6084/m9.figshare.6339893.v1
title: Dynamic Tracking Parameters

description: MS Excel result table containing all parameters of the dynamic organelle tracking analysis as described in the main manuscript under Methods, section 'Data mining in CSV result files and assembly of final EXCEL result tables with KNIME'.
DOI: 10.6084/m9.figshare.6339851
title: Tabla DK eLearning-TPCK

description: Tabla utilizada en la propuesta DK eLearning-TPCK<br>Nobre, A., Barros, D., Chenoll, A., Setién, A (2019) Tabla DK eLearning: optimización de la práctica docente en un ambiente online. RED. Revista de Educación a Distancia, 59. DOI http://dx.doi.org/10.6018/red/59/03<br>
DOI: 10.6084/m9.figshare.6339851.v1
title: Tabla DK eLearning-TPCK

description: Tabla utilizada en la propuesta DK eLearning-TPCK
DOI: 10.6084/m9.figshare.6339830
title: Apple Inc Prices Apr 2017 - Apr 2018

description: Apple prices dataset used in the book Advanced Data Science and Analytics with Python
DOI: 10.6084/m9.figshare.6339533
title: trajectory_files

description: trajectory files used to generate simulated datasets 1 through 70<br>
DOI: 10.6084/m9.figshare.6339533.v1
title: trajectory_files

description: trajectory files used to generate simulated datasets 1 through 70<br>
DOI: 10.6084/m9.figshare.6339518
title: Resolving population structure and genetic differentiation associated with RAD-SNP loci under selection in jute (Corchorus olitorius L.)

description: We performed individual-based restriction site-associated DNA (RAD) sequencing to discover single-nucleotide polymorphisms (SNPs) across a diverse set of 225 fibre-type lines in jute (<i>Corchorus olitorius </i>L., Malvaceae s. l.) <i></i>and identified a set of 1115 polymorphic RAD-SNP markers (SNP containing RADseq loci), each supporting a single SNP with &gt;0.05 minor allele frequency (MAF). Based on multilocus RAD-SNP genotypes of 221 lines (four lines were excluded due to &gt;50 % missing genotypes) with a call rate of &gt;0.95, we examined the geographic patterns of genetic diversity across nine predefined populations, viz. AFR1 (Kenya and Sudan), AFR2 (Tanzania), CI (central India), EI (east India), NI (north India), SI (south India), NPPK (Nepal and Pakistan), ESEA (China, Myanmar, Indonesia and Thailand) and RoW (Australia, Brazil, Germany and Russia) and determined their genetic relatedness by assessing the <i>F</i><sub>ST</sub>, AMOVA, <i>N</i><sub>m </sub>and PCA at the population level. Using five assignment tests with different statistical bases (<i>k</i>-means clustering, STRUCTURE, sNMF, DAPC and frequency-based assignment test), the most exhaustive yet to our knowledge, we inferred how these geographic populations are structured. We further applied subpopulation-based <i>F</i><sub>ST</sub>- (LOSITAN and BayeScan) and <i>G</i><sub>ST</sub>-outlier (HacDivSel) tests and an individual-based global approach (PCAdapt) based on principal component analysis (PCA) to detect putative RAD-SNP loci under selection. Instead of BLAST alone, we employed a serial approach based on BLAST, Blast2GO mapping, protein domain annotation (DoMosaics) and REViGO semantic analysis to identify candidate genes and retrieve the overrepresented gene ontology (GO) terms associated with the outlier RAD-SNP loci putatively involved in local adaptation. <br>
DOI: 10.6084/m9.figshare.6339518.v1
title: Resolving population structure and genetic differentiation associated with RAD-SNP loci under selection in non-model jute (Corchorus olitorius L.)

description: We performed individual-based restriction site-associated DNA (RAD) sequencing to discover single-nucleotide polymorphisms (SNPs) across a diverse set of 225 fibre-type lines in jute (<i>Corchorus olitorius </i>L., Malvaceae s. l.) <i></i>and identified a set of 1115 polymorphic RAD-SNP markers (SNP containing RADseq loci), each supporting a single SNP with &gt;0.05 minor allele frequency (MAF). Based on multilocus RAD-SNP genotypes of 221 lines (four lines were excluded due to &gt;50 % missing genotypes) with a call rate of &gt;0.95, we examined the geographic patterns of genetic diversity (and allelic diversity) across nine predefined populations [Africa 1 (Kenya and Sudan), Africa 2 (Tanzania), Central India (CI), East India (EI), North India (NI), South India (SI), NPPK (Nepal and Pakistan), ESEA (China, Myanmar, Indonesia and Thailand) and RoW (Australia, Brazil, Germany and Russia)] and determined their genetic relatedness by assessing the <i>F</i><sub>ST</sub>, AMOVA, <i>N</i><sub>m </sub>and major axes of genetic variation (principal components) at the population level. Using five assignment tests with different statistical bases (<i>k</i>-means clustering, STRUCTURE, sNMF, DAPC and frequency-based assignment), the most exhaustive yet to our knowledge, we inferred how these geographic populations are structured. We further applied subpopulation-based <i>F</i><sub>ST</sub>- (LOSITAN and BayeScan) and <i>G</i><sub>ST</sub>-outlier (HacDivSel) tests and an individual-based global approach (PCAdapt) based on PCA to detect putative RAD-SNP loci under selection. Instead of BLAST alone, we employed a serial approach based on BLAST, Blast2GO mapping, protein domain annotation (DoMosaics) and REViGO semantic analysis to identify candidate genes and retrieve the overrepresented gene ontology (GO) terms associated with the outlier RAD-SNP loci putatively involved in local adaptation. <br>
DOI: 10.6084/m9.figshare.6339518.v2
title: Resolving population structure and genetic differentiation associated with RAD-SNP loci under selection in non-model jute (Corchorus olitorius L.)

description: We performed individual-based restriction site-associated DNA (RAD) sequencing to discover single-nucleotide polymorphisms (SNPs) across a diverse set of 225 fibre-type lines in jute (<i>Corchorus olitorius </i>L., Malvaceae s. l.) <i></i>and identified a set of 1115 polymorphic RAD-SNP markers (SNP containing RADseq loci), each supporting a single SNP with &gt;0.05 minor allele frequency (MAF). Based on multilocus RAD-SNP genotypes of 221 lines (four lines were excluded due to &gt;50 % missing genotypes) with a call rate of &gt;0.95, we examined the geographic patterns of genetic diversity across nine predefined populations, viz. AFR1 (Kenya and Sudan), AFR2 (Tanzania), CI (central India), EI (east India), NI (north India), SI (south India), NPPK (Nepal and Pakistan), ESEA (China, Myanmar, Indonesia and Thailand) and RoW (Australia, Brazil, Germany and Russia) and determined their genetic relatedness by assessing the <i>F</i><sub>ST</sub>, AMOVA, <i>N</i><sub>m </sub>and PCA at the population level. Using five assignment tests with different statistical bases (<i>k</i>-means clustering, STRUCTURE, sNMF, DAPC and frequency-based assignment test), the most exhaustive yet to our knowledge, we inferred how these geographic populations are structured. We further applied subpopulation-based <i>F</i><sub>ST</sub>- (LOSITAN and BayeScan) and <i>G</i><sub>ST</sub>-outlier (HacDivSel) tests and an individual-based global approach (PCAdapt) based on principal component analysis (PCA) to detect putative RAD-SNP loci under selection. Instead of BLAST alone, we employed a serial approach based on BLAST, Blast2GO mapping, protein domain annotation (DoMosaics) and REViGO semantic analysis to identify candidate genes and retrieve the overrepresented gene ontology (GO) terms associated with the outlier RAD-SNP loci putatively involved in local adaptation. <br>
DOI: 10.6084/m9.figshare.6339518.v3
title: Resolving population structure and genetic differentiation associated with RAD-SNP loci under selection in non-model jute (Corchorus olitorius L.)

description: We performed individual-based restriction site-associated DNA (RAD) sequencing to discover single-nucleotide polymorphisms (SNPs) across a diverse set of 225 fibre-type lines in jute (<i>Corchorus olitorius </i>L., Malvaceae s. l.) <i></i>and identified a set of 1115 polymorphic RAD-SNP markers (SNP containing RADseq loci), each supporting a single SNP with &gt;0.05 minor allele frequency (MAF). Based on multilocus RAD-SNP genotypes of 221 lines (four lines were excluded due to &gt;50 % missing genotypes) with a call rate of &gt;0.95, we examined the geographic patterns of genetic diversity across nine predefined populations, viz. AFR1 (Kenya and Sudan), AFR2 (Tanzania), CI (central India), EI (east India), NI (north India), SI (south India), NPPK (Nepal and Pakistan), ESEA (China, Myanmar, Indonesia and Thailand) and RoW (Australia, Brazil, Germany and Russia) and determined their genetic relatedness by assessing the <i>F</i><sub>ST</sub>, AMOVA, <i>N</i><sub>m </sub>and PCA at the population level. Using five assignment tests with different statistical bases (<i>k</i>-means clustering, STRUCTURE, sNMF, DAPC and frequency-based assignment test), the most exhaustive yet to our knowledge, we inferred how these geographic populations are structured. We further applied subpopulation-based <i>F</i><sub>ST</sub>- (LOSITAN and BayeScan) and <i>G</i><sub>ST</sub>-outlier (HacDivSel) tests and an individual-based global approach (PCAdapt) based on principal component analysis (PCA) to detect putative RAD-SNP loci under selection. Instead of BLAST alone, we employed a serial approach based on BLAST, Blast2GO mapping, protein domain annotation (DoMosaics) and REViGO semantic analysis to identify candidate genes and retrieve the overrepresented gene ontology (GO) terms associated with the outlier RAD-SNP loci putatively involved in local adaptation. <br>
DOI: 10.6084/m9.figshare.12776405
title: Codex Marianus: Dative Absolutes (manipulated)

description: Starting from DA_Marianus_raw2, this dataset treats all dative absolutes in bystъ-clauses as preceding the main clause.
DOI: 10.6084/m9.figshare.12776405.v1
title: Codex Marianus: Dative Absolutes (manipulated)

description: Starting from DA_Marianus_raw2, this dataset treats all dative absolutes in bystъ-clauses as preceding the main clause.
DOI: 10.17028/rd.lboro.6339305
title: Antimicrobial Resistance of the Silicone Elastomer

description: Material processing and post care methods (specifically for the silicone elastomer) for the maxillofacial prostheses in reducing the biofilm growth. This was performed by subjecting the samples to bacterium infection and then using a plant based antimicrobial to disinfect the test sample. After, the test samples were subjected to mechanical testing (tensile and tear strength, elongation test, Shore A hardness) and morphology tests (visual observation and scanning electron microscopy).
DOI: 10.17028/rd.lboro.6339305.v1
title: Antimicrobial Resistance of the Silicone Elastomer

description: Material processing and post care methods (specifically for the silicone elastomer) for the maxillofacial prostheses in reducing the biofilm growth. This was performed by subjecting the samples to bacterium infection and then using a plant based antimicrobial to disinfect the test sample. After, the test samples were subjected to mechanical testing (tensile and tear strength, elongation test, Shore A hardness) and morphology tests (visual observation and scanning electron microscopy).
DOI: 10.6084/m9.figshare.6339215
title: Replication files: Can Information Change Public Support for Aid.

description: This is a Stata dataset and do files to allow replication of the tests used in the forthcoming Journal of Development Studies paper: Can Information Change Public Support for Aid?<br>Author Terence Wood.<br>Uploaded: 2018<br>
DOI: 10.6084/m9.figshare.6339215.v1
title: Replication files: Can Information Change Public Support for Aid.

description: This is a Stata dataset and do files to allow replication of the tests used in the forthcoming Journal of Development Studies paper: Can Information Change Public Support for Aid?<br>Author Terence Wood.<br>Uploaded: 2018<br>
DOI: 10.6084/m9.figshare.6339215.v2
title: Replication files: Can Information Change Public Support for Aid.

description: This is a Stata dataset and do files to allow replication of the tests used in the forthcoming Journal of Development Studies paper: Can Information Change Public Support for Aid?<br>Author Terence Wood.<br>Uploaded: 2018<br>
DOI: 10.6084/m9.figshare.6339095
title: raisd_data_71_113

description: simulated datasets for RAiSD evaluation, datasets 71 to 113<br>
DOI: 10.6084/m9.figshare.6339095.v1
title: raisd_data_71_113

description: simulated datasets for RAiSD evaluation, datasets 71 to 113<br>
DOI: 10.6084/m9.figshare.6338717
title: Additional file 4: of Overlapping but distinct topology for zebrafish V2R-like olfactory receptors reminiscent of odorant receptor spatial expression zones

description: Distribution properties and significance of differences. A) The first sheet of the spreadsheet contains the parameter values for the first, second and third quartile of the distributions, i.e. for the radial, laminar height and z-axis coordinates. Half width of distributions was determined as 3rd quartile-1st quartile difference. Distributions of cells expressing V2R-related OlfC and marker genes in adult zebrafish were determined in this study. Values for zebrafish OR and Xenopus V2R were determined from the raw data of the respective publications. B) Maximal vertical distance between two distributions. Pairwise comparison of spatial distributions for different olfactory receptor genes and marker genes of the adult zebrafish (OlfC), and larval Xenopus laevis (V2Rs) to determine the maximal vertical distance between the respective cumulative distribution functions. The range for this maximal vertical distance is pointed out by indicating the minimal and maximal values found. C) The Kolmogorov Smirnov test (see Materials and Methods) was used to determine significance of distribution differences. As a cutoff for significance, we chose p 100 data points). (XLS 51 kb)
DOI: 10.6084/m9.figshare.6338717.v1
title: Additional file 4: of Overlapping but distinct topology for zebrafish V2R-like olfactory receptors reminiscent of odorant receptor spatial expression zones

description: Distribution properties and significance of differences. A) The first sheet of the spreadsheet contains the parameter values for the first, second and third quartile of the distributions, i.e. for the radial, laminar height and z-axis coordinates. Half width of distributions was determined as 3rd quartile-1st quartile difference. Distributions of cells expressing V2R-related OlfC and marker genes in adult zebrafish were determined in this study. Values for zebrafish OR and Xenopus V2R were determined from the raw data of the respective publications. B) Maximal vertical distance between two distributions. Pairwise comparison of spatial distributions for different olfactory receptor genes and marker genes of the adult zebrafish (OlfC), and larval Xenopus laevis (V2Rs) to determine the maximal vertical distance between the respective cumulative distribution functions. The range for this maximal vertical distance is pointed out by indicating the minimal and maximal values found. C) The Kolmogorov Smirnov test (see Materials and Methods) was used to determine significance of distribution differences. As a cutoff for significance, we chose p 100 data points). (XLS 51 kb)
DOI: 10.6084/m9.figshare.6338696
title: Additional file 1: of Overlapping but distinct topology for zebrafish V2R-like olfactory receptors reminiscent of odorant receptor spatial expression zones

description: List of all zebrafish OlfC genes. Gene names, synonyms, accession numbers, genomic localisation in the GRC z10 genome, amino acid and nucleotide sequence length are listed. (XLS 19Â kb)
DOI: 10.6084/m9.figshare.6338696.v1
title: Additional file 1: of Overlapping but distinct topology for zebrafish V2R-like olfactory receptors reminiscent of odorant receptor spatial expression zones

description: List of all zebrafish OlfC genes. Gene names, synonyms, accession numbers, genomic localisation in the GRC z10 genome, amino acid and nucleotide sequence length are listed. (XLS 19Â kb)
DOI: 10.6084/m9.figshare.6338678
title: Additional file 4: of Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance

description: Table S3. P values of MSigDB hallmark pathways for CoGAPS DNA methylation patterns calculated with the permutation-based statistic in calcCoGAPSStat. (XLSX 79Â kb)
DOI: 10.6084/m9.figshare.6338678.v1
title: Additional file 4: of Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance

description: Table S3. P values of MSigDB hallmark pathways for CoGAPS DNA methylation patterns calculated with the permutation-based statistic in calcCoGAPSStat. (XLSX 79Â kb)
DOI: 10.6084/m9.figshare.6338660
title: Additional file 1: of Correction to: Lifetime stress accelerates epigenetic aging in an urban, African American cohort: relevance of glucocorticoid signaling

description: Location of epigenetic clock CpGs in relation to the nearest glucocorticoid response element (as shown by within GR ChIP-Seq peaks in a lymphoblastoid cell line) and their methylation changes in response to the glucocorticoid receptor agonist dexamethasone. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.6338660.v1
title: Additional file 1: of Correction to: Lifetime stress accelerates epigenetic aging in an urban, African American cohort: relevance of glucocorticoid signaling

description: Location of epigenetic clock CpGs in relation to the nearest glucocorticoid response element (as shown by within GR ChIP-Seq peaks in a lymphoblastoid cell line) and their methylation changes in response to the glucocorticoid receptor agonist dexamethasone. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.6338657
title: Additional file 3: of Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance

description: Table S2. P values of MSigDB hallmark pathways for CoGAPS expression patterns calculated with the permutation-based statistic in calcCoGAPSStat. (XLSX 99Â kb)
DOI: 10.6084/m9.figshare.6338657.v1
title: Additional file 3: of Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance

description: Table S2. P values of MSigDB hallmark pathways for CoGAPS expression patterns calculated with the permutation-based statistic in calcCoGAPSStat. (XLSX 99Â kb)
DOI: 10.6084/m9.figshare.6338639
title: Additional file 2: of Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance

description: Table S1. PatternMarker genes for the expression and methylation CoGAPS patterns and list of genes with significant anti-correlation between gene expression and methylation. (XLSX 117Â kb)