cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3614929
title: A novel metabarcoding strategy for studying nematode communities

description: Nematodes are most abundant soil metazoa. How, the ecology of this group of organism remains poorly elucidated, partly due to the lack of reliable and validated sequencing strategies. In this study, we tested four primer sets for amplicon sequencing: JB3/JB5, SSU_04F/SSU_22R, Nemf/18Sr2b from earlier studies; and MMSF/MMSR, a newly developed primer set from this study. In order to test these primer sets, we used 22 samples of individual nematode species, 20 mock communities, 20 soil samples, 20 mock communities in soil, and 4 root/rhizosphere soil samples. We successfully amplified the target regions (COI gene; V1-V2, V4-V8 region of 18S rRNA gene) from these 86 DNA samples and sequenced the amplicons on an Illumina MiSeq sequencing platform. We found that the MMSF/MMSR and Nemf/18Sr2b were very efficient in detecting soil nematode compared to JB and SSU primer sets based on annotation of sequence reads at genus and in some cases at species level. Therefore, these primer sets could be used to study nematode communities in agricultural environments.
DOI: 10.15468/n2ycf1
title: ------ A- ----- new- ----- species- ----- of- ----- the- ----- genus ------ Toleria- ----- Walker, ------ [1865] ------ from- ----- northern ------ Vietnam- ----- and Laos- ----- with- ----- establishment- ----- of- ----- a- ----- new- ----- generic ------ synonymy- ----- in- ----- Cissuvorini- ----- (Lepidoptera Sesiidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kallies, Axel, Ogane, Hiromichi, Yata, Naoki (2020): ------ A- ----- new- ----- species- ----- of- ----- the- ----- genus ------ Toleria- ----- Walker, ------ [1865] ------ from- ----- northern ------ Vietnam- ----- and Laos- ----- with- ----- establishment- ----- of- ----- a- ----- new- ----- generic ------ synonymy- ----- in- ----- Cissuvorini- ----- (Lepidoptera Sesiidae). Zootaxa 4728 (1): 123-132, DOI: https://doi.org/10.11646/zootaxa.4728.1.6
DOI: 10.15468/qzvrqv
title: A new species of Enosis Mabille, 1889 (Lepidoptera, Hesperiidae, Hesperiinae) from southern Brazil and notes on Enosis angularis (Möschler, 1877)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lemes, José Ricardo Assmann, Mielke, Olaf Hermann Hendrik, Grande, Mirna Martins Casa- (2020): A new species of Enosis Mabille, 1889 (Lepidoptera, Hesperiidae, Hesperiinae) from southern Brazil and notes on Enosis angularis (Möschler, 1877). Zootaxa 4728 (1): 133-142, DOI: https://doi.org/10.11646/zootaxa.4728.1.7
DOI: 10.15468/eywkb3
title: A new species of Hippomonavella (Bryozoa: Cheilostomata) from the Holocene and Recent of Argentina and Uruguay (Southwest Atlantic)

description: This dataset contains the digitized treatments in Plazi based on the original journal article López-Gappa, J., Liuzzi, M. G., Pereyra, C. (2020): A new species of Hippomonavella (Bryozoa: Cheilostomata) from the Holocene and Recent of Argentina and Uruguay (Southwest Atlantic). Zootaxa 4728 (1): 143-148, DOI: https://doi.org/10.11646/zootaxa.4728.1.8
DOI: 10.1285/i22390359v32
title: Arcaico e moderno, locale e globale nelle culture lusofone

description: Questo numero monografico intende riunire una serie di contributi presentati nell'ambito del IV Convegno dell'Associazione Italiana di Studi Portoghesi e Brasiliani (AISPEB), tenutosi presso il Dipartimento di Lingue, Letterature e Culture Moderne dell'Università di Bologna tra il 5 e il 6 novembre 2018. Più che una generale e indiscriminata raccolta di atti, tuttavia, il volume ha l'ambizione di offrire una selezione delle più rappresentative proposte critiche dell'odierna Lusitanistica italiana, quasi tutte scaturite, non senza opportune intersezioni interdisciplinari, dai suoi due principali filoni cardine, della linguistica e della letteratura, entrambi, però, intrinsecamente rinnovati - grazie altresì all'apporto di giovani studiosi - sia nel loro orizzonte geografico-culturale di riferimento (che, insieme alle aree tradizionali, la portoghese e la brasiliana, ha finito ormai per inglobare stabilmente anche l'Africa lusofona) sia nei loro indirizzi di studio (capaci, in effetti, di affiancare, alle classiche sollecitazioni storico-linguistiche e filologico-letterarie, quelle derivanti dalle tendenze più in voga nel dibattito scientifico contemporaneo, dalla glottodidattica multimediale alla traduzione audiovisiva, dagli studi postcoloniali alla memoria culturale). Il quadro che ne risulta, per ampiezza tematica e innovazione metodologica, lungi, dunque, dal limitarsi a fotografare lo stato dell'arte di questo specifico settore scientifico-disciplinare, traccia soprattutto le nuove coordinate di una ricerca ad ampio raggio, che, inserita non di rado nell'ambito di collaborazioni internazionali di alto profilo o anche semplicemente ricalibrata nell'ottica dei mutati orizzonti pedagogici e dei più attuali orientamenti epistemologici, appare comunque foriera di significativi sviluppi euristici.
DOI: 10.7910/dvn/ubwbkk/fsh7yk
title: Nining Yuniati - Peer Review.pdf

description: :unav
DOI: 10.15129/69626e13-2fb1-4ed2-9b1b-70bfb938fe91
title: Data for: "Low-cost, open-access quantitative phase imaging of algal cells using the transport of intensity equation"

description: Data set for submission to Royal Society Open Science containing 7 folders: 5 containing images for figures in the article, 1 containing python code for the Transport of Intensity Equation, 1 containing data used to prepare tables in the article 2 text files: 1 outlining a calibration technique 1 outlining a workflow for measuring diameter and refractive index
DOI: 10.17632/djvb6k8brb.1
title: Biofilm migration videos

description: Video 1: Active detachment of bacterial cells from the frontline of interstitial biofilms and free movement of planktonic cells or small bacterial clusters were noticed after 24 h of biofilm culture in a humid chamber. Video 2: The dispersed cells seeded a nearby area and re-established a standalone “daughter” biofilm. The “daughter” biofilms expanded to merge with the primary biofilm and lead to migration of the interstitial biofilm.
DOI: 10.17632/pc4z4vkpfg.1
title: "Piezoresistive properties of SEBS-CNTs composites"

description: The piezoresistive behaviour of SEBS-CNTs nanocomposites was investigated to evaluate. Composites containing from 3%wt. to 7%wt. of CNTs were processed by injection moulding in order to evaluate the percolation threshold. The piezoresistive response under flexural strain of nanocomposites with a CNTs content above the percolation threshold was then studied. The nanocomposites showing the most promising performance were tested under cyclic conditions. Conductive tracks were then processed on nanocomposites surfaces (with 3 and 4% of CNTs) by means of a laser treatment. Samples with optimized laser tracks were then submitted to 1000 stretching/releasing cycles, showing improved piezoresistive performance.
DOI: 10.17632/jbhn99bb8j.1
title: Buti et al 2020 PNAS - data supporting the supplementary figures

description: Raw data that was used to generate the supplementary figures for Buti et al 2020 PNAS "CagA-ASPP2 complex mediates loss of cell polarity and favors H. pylori colonization of human gastric organoids". Please refer to the paper for more explanation www.pnas.org/cgi/doi/10.1073/pnas.1908787117 Due to size restrictions, for the mass spectrometry and high-content screening experiments, only the processed files have been uploaded. Raw data files for these experiments are available upon request.
DOI: 10.17632/ngvnv4wvy3.1
title: Buti et al 2020 PNAS - data supporting the main figures

description: Raw data that was used to generate the main figures for Buti et al 2020 PNAS "CagA-ASPP2 complex mediates loss of cell polarity and favors H. pylori colonization of human gastric organoids". Please refer to the paper for more explanation www.pnas.org/cgi/doi/10.1073/pnas.1908787117 Due to size restrictions, for the mass spectrometry and high-content screening experiments, only the processed files have been uploaded. Raw data files for these experiments are available upon request.
DOI: 10.17632/5t5kb6gc35.1
title: All-optical volumetric physiology for connectomics in dense neuronal structures. Huang et al

description: Raw image data and analysis program for all-optical physiology (AOP) in Drosophila anterior visual pathway (MT and TB neurons). Figure1: Functional images of two-dimensional all-optical physiology (2D-AOP) measurement of MT and TB neurons. Figure2-3: Functional images of three-dimensional all-optical physiology (3D-AOP) measurement and volumetric structural images of MT and TB neurons. FigureS1: Immunolabeling volumetric images of MT neurons, TB neurons and neuropils (DLG) in Drosophila. GLM_Program: A home-built program for 3D functional image analysis by using the generalized linear model (GLM).
DOI: 10.5281/zenodo.3614875
title: WeGA data package

description: The WeGA data package is a collection of TEI and MEI documents, constituting the digital edition of the Carl-Maria-von-Weber-Gesamtausgabe. The files are derived from our internal WeGA TEI format and are valid against TEI_all and mei_all respectively. WeGA element additions such as <code>tei:workName</code> are mapped to the more generic <code>tei:name</code> element, but no information was dropped. Internal references are provided via <code>@ref</code> attributes and full URIs, rather than magic <code>@key</code> attributes. 1. Contents Every folder at the root level of the archive holds a distinctive WeGA document type <code>addenda</code>: Addenda and Corrigenda concerning the printed volumes of the WeGA <code>biblio</code>: bibliographic objects, forming our bibliography <code>diaries</code>: Carl Maria von Weber's diaries <code>documents</code>: various documents, not fitting any other category <code>letters</code>: correspondence materials <code>news</code>: website news, forming our "news" section on the website <code>orgs</code>: organizations and institutions <code>persons</code>: personographies <code>places</code>: place descriptions <code>thematicCommentaries</code>: small essays that comment on a collection of e.g. letters or diary entries <code>var</code>: various website pages, e.g. API documentation <code>works</code>: work descriptions <code>writings</code>: writings, mostly reviews and historic news 2. License The WeGA data package is released under a Creative Commons Attribution 4.0 International License (CC BY 4.0). Enjoy! 3. Contact This dataset is provided by the Carl-Maria-von-Weber-Gesamtausgabe c/o Musikwissenschaftliches Seminar Detmold/Paderborn Hornsche Str. 39 D–32756 Detmold info at weber-gesamtausgabe.de 4. DOI 10.5281/zenodo.3520701
DOI: 10.6084/m9.figshare.11664015.v2
title: Simulated significant wave height (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated significant wave height (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.17632/79j788ychw.1
title: Performance of Islamic and SRI mutual funds: Evidence from Asia-Pacific and European Markets

description: Islamic.dat: Stata Data file of Islamic mutual funds. ISR.dat: Stata Data file of SRI mutual funds. Table3.do: Stata do file for table 3 estimations. Table4.do: Stata do file for table 4 estimations. Table5.do: Stata do file for table 5 estimations. Table6_part1.do and Table6_part2: Stata do files for table 6 estimations.
DOI: 10.25413/sun.11669277
title: Metadata - N mineralisation data used to predict the response to fertilisation in semi-mature pine stands

description: This document provides descriptive information about the multiple regression file and the accompanying data file. The document addresses the discovery, context and technical aspects relating to these files.
DOI: 10.5281/zenodo.1469075
title: WICE-DB - Web Instrument Count Experiment

description: This dataset consist of 12 hand selected musical stimuli to evaluate source count experiments. However, to better study the influence of vibrato we require extended control over certain parameters such as note duration, vibrato duration, exact fundamental frequency, vibrato rate, vibrato extend, reproducibility, loudness or expression. As mentioned in the previous chapter, vibrato techniques vary across instruments. Instruments such as violin and saxophone are known for their distinct frequency modulations. Other instruments such as the English horn and the flute are more close to amplitude modulations. We generated the notes using a software sampler which allows us to control the parameters such as the vibrato. All our test stimuli have a duration of three seconds. Items were equalized in loudness by using an iterative calculation of the loudness algorithm of the time-varying Zwicker model. We rendered 29 notes of C4, resulting in 841 unique unison instrument mixtures per pitch class.
DOI: 10.5281/zenodo.1469076
title: WICE-DB - Web Instrument Count Experiment

description: This dataset consist of 12 hand selected musical stimuli to evaluate source count experiments. However, to better study the influence of vibrato we require extended control over certain parameters such as note duration, vibrato duration, exact fundamental frequency, vibrato rate, vibrato extend, reproducibility, loudness or expression. As mentioned in the previous chapter, vibrato techniques vary across instruments. Instruments such as violin and saxophone are known for their distinct frequency modulations. Other instruments such as the English horn and the flute are more close to amplitude modulations. We generated the notes using a software sampler which allows us to control the parameters such as the vibrato. All our test stimuli have a duration of three seconds. Items were equalized in loudness by using an iterative calculation of the loudness algorithm of the time-varying Zwicker model. We rendered 29 notes of C4, resulting in 841 unique unison instrument mixtures per pitch class.
DOI: 10.1285/i22390359v32p1
title: Frontespizio
DOI: 10.5281/zenodo.3615855
title: OSGeo tools in Docker Hub

description: This repository shows the results of 60 queries using the Docker Hub API to measure the presence of OSGeo tools in Docker images. The results have been obtained using PSDockerHub. It is a PowerShell module written to access the official Docker Hub/Registry. Its main goal is to make sure that you have never had to use the public part of Docker Hub site in the browser. These files are obtained using this script https://github.com/sergitrilles/OSGEO_docker. All the files have been manually modified to choose the correct search results.
DOI: 10.5281/zenodo.1467967
title: CountIt - An Auditory Experiment to Estimate the Number of Speakers

description: Countit experiment data accompanying the Countit Paper: https://ieeexplore.ieee.org/document/8506601
description: {"references": ["10.1109/TASLP.2018.2877892"]}
DOI: 10.5281/zenodo.1467968
title: CountIt - An Auditory Experiment to Estimate the Number of Speakers

description: Countit experiment data accompanying the Countit Paper: https://ieeexplore.ieee.org/document/8506601
description: {"references": ["10.1109/TASLP.2018.2877892"]}
DOI: 10.5281/zenodo.3610755
title: DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats

description: Inferences of the interactions between species’ ecological niches and spatial distribution have been historically based on simple metrics such as low-resolution dietary breadth and range size, which might have impeded the identification of meaningful links between niche features and spatial patterns. We analysed the relationship between dietary niche breadth and spatial distribution features of European bats, by combining continent-wide DNA metabarcoding of faecal samples with species distribution modelling. Our results show that while range size is not correlated with dietary features of bats, the homogeneity of the spatial distribution of species exhibits a strong correlation with dietary breadth. We also found that dietary breadth is correlated with bats’ hunting flexibility. However, these two patterns only stand when the phylogenetic relations between prey are accounted for when measuring dietary breadth. Our results suggest that the capacity to exploit different prey types enables species to thrive in more distinct environments and therefore exhibit more homogeneous distributions within their ranges.
description: Quality-filtered targeted sequenced reads generated using Zeale and Epp primers. The relation between files, samples, tags and processing bulks used by DAMe are compressed in the file dame_files.zip. The code used to process the data can be found in the Supplementary Code 1 file of the manuscript.
DOI: 10.5281/zenodo.3610756
title: DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats

description: Inferences of the interactions between species’ ecological niches and spatial distribution have been historically based on simple metrics such as low-resolution dietary breadth and range size, which might have impeded the identification of meaningful links between niche features and spatial patterns. We analysed the relationship between dietary niche breadth and spatial distribution features of European bats, by combining continent-wide DNA metabarcoding of faecal samples with species distribution modelling. Our results show that while range size is not correlated with dietary features of bats, the homogeneity of the spatial distribution of species exhibits a strong correlation with dietary breadth. We also found that dietary breadth is correlated with bats’ hunting flexibility. However, these two patterns only stand when the phylogenetic relations between prey are accounted for when measuring dietary breadth. Our results suggest that the capacity to exploit different prey types enables species to thrive in more distinct environments and therefore exhibit more homogeneous distributions within their ranges.
description: Quality-filtered targeted sequenced reads generated using Zeale and Epp primers. The relation between files, samples, tags and processing bulks used by DAMe are compressed in the file dame_files.zip. The code used to process the data can be found in the Supplementary Code 1 file of the manuscript.
DOI: 10.5281/zenodo.3613666
title: Scans and transcriptions of the VOC and the Haarlem notarial deeds archives

description: The National Archives of the Netherlands and the Noord-Hollands Archief started a colloboration with the Transkribus HTR (Handwritten Text Recognition) platform in order to semi automatically transcribe 2 million pages of old Dutch texts. The archives are 17th and 18th century material from the Dutch East-Asia Company (VOC) and 19th century notarial deeds from the city of Haarlem.<br> In order to train the HTR software, human made transciptions had to be made. These datasets contain the scans (.jpg images) with the transcriptions in ALTO xml format (word level) that have been made in order to train the HTR-model for text recognition.<br> <br> The first set contains scans and transcriptions from the Verenigde Oost-Indische Compagnie (VOC) archive, it's inventory can be found here: http://www.gahetna.nl/archievenoverzicht/pdf/NL-HaNA_1.04.02.ead.pdf <strong>Inventory numbers</strong><br> The transcipts are samples of the following inventory numbers: 7528-9540 <strong>Country/place</strong><br> Dutch Indies (modern day Indonesia) / Batavia (modern day Jakarta) <strong>Language</strong><br> Dutch <strong>Number of transcriptions</strong><br> 4735 (mostly split) ------------------------------------------------------------- The second set contains scans and transcriptions from the Notarial deeds of Haarlem, it's inventories can be found here:<br> https://noord-hollandsarchief.nl/bronnen/archieven?mivast=236&mizig=210&miadt=236&micode=1972&milang=nl&miview=inv2<br> https://noord-hollandsarchief.nl/bronnen/archieven?mivast=236&mizig=210&miadt=236&micode=1617&milang=nl&miview=inv2 This set also contains scans and transcriptions from other notarial archives, from Dutch provinces. They are however few in number. <strong>Inventory numbers</strong><br> The transcipts are samples of the following inventory numbers: 1617_1600 until 1617_1805 and 1972_5 until 1972_813 <strong>Country/place</strong><br> The Netherlands / Haarlem <strong>Language</strong><br> Dutch and sometimes French <strong>Number of transcriptions</strong><br> 1615 (mostly spread)
DOI: 10.5281/zenodo.3615396
title: BMW21614_Genoom_WT_S.cerevisiae

description: This dataset contains example data for the course Genoom BMW21614. The S.cerevisiae RNA-seq and MNase-seq data were generated by the Holstege lab and were provided for this course.
DOI: 10.5061/dryad.7d3s9/1
title: Data from all experiments described in the study

description: The data in this file feature in the paper "Evolutionary dynamics of interlinked public goods traits: an experimental study of siderophore production in Pseudomonas aeruginosa", by Adin Ross-Gillespie, Zoé Dumas and Rolf Kümmerli. The paper has been accepted for publication in the Journal of Evolutionary Biology (as of November 2014)The xls file comprises two sheets, namely 'SelectionExperiment' and 'CompetitionExperiment', comprising data from figures 3 and 4; and figures 2 and S1, respectively. Further information, including description of the variables, is provided in each spreadsheet.
DOI: 10.5061/dryad.r4019/1
title: culex_nochoice_assay_data

description: File is structured so that there is one individual per line.  Variable "chick.age" represents the age of the chick host used in weeks. "Response" is a binomial variable, where 1 = landing on the host, and 0 = no response.  "time" represents time to landing in seconds.  "landing.site" is a multinomial response, where h = head, b = breast, l = legs, w = wings, and t = tail feathers and rump.  Landing site was only measure in no-choice tests where the chick was used.
DOI: 10.5061/dryad.r4019/2
title: culex_host_choice_assay_data

description: Data are in long format, where each observation per mosquito is provided on its own line.  "mosq.id" is a unique identifier for each mosquito.  "host" represents the choice made during the assay, where "h" represents human, "c" represents chick, and "n" represents no-choice made during the 16 min test period.  "Date.test" represents the date each mosquito BEGAN testing.  "time" corresponds day of testing in multi-day longitudinal tests, where time = 1 represents the first day of testing.  "chick.no" represents the unique identifier of an individual chick used during testing.  "strain" represents the population that each mosquito belonged to: cpm = Culex pipiens molestus, cpc = Culex pipiens pipiens, f1 = hybrid progeny of cpm and cpc, bcpip = hybrid progeny of f1 and cpc, bcmol = hybrid progeny of f1 and cpm.
DOI: 10.5061/dryad.5h979/1
title: tpc133710_SupplementalDS1
DOI: 10.5061/dryad.5h979/2
title: tpc133710_SupplementalDS2
DOI: 10.5061/dryad.5h979/3
title: tpc133710_SupplementalDS3
DOI: 10.5061/dryad.5h979/4
title: tpc133710_SupplementalDS4
DOI: 10.5061/dryad.5h979/10
title: tpc133710_SupplementalDS10
DOI: 10.5061/dryad.5h979/11
title: tpc133710_SupplementalDS11
DOI: 10.5061/dryad.5h979/12
title: tpc133710_SupplementalDS12
DOI: 10.5061/dryad.5h979/5
title: tpc133710_SupplementalDS5
DOI: 10.5061/dryad.5h979/6
title: tpc133710_SupplementalDS6
DOI: 10.5061/dryad.5h979/7
title: tpc133710_SupplementalDS7
DOI: 10.5061/dryad.5h979/8
title: tpc133710_SupplementalDS8
DOI: 10.5061/dryad.5h979/9
title: tpc133710_SupplementalDS9
DOI: 10.5061/dryad.20860/1
title: Dataset including occurrences of macroinvertebrates in three river basins
DOI: 10.5061/dryad.5h979/13
title: tpc133710_SupplementalDS13
DOI: 10.5061/dryad.5h979/14
title: tpc133710_SupplementalDS14