cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15305084
title: MutationAssessor r4 functional impact scores and multiple sequence alignments for human proteins

description: MutationAssessor Release 4

mutationassessor4_scores.tsv.zip

Predicted functional impact score and functional impact for single amino acid subsitution mutations in human proteins.

Columns:



uniprotId: protein's UniProt accession

hgvspShort: amino acid change and position

F_score: functional impact score

F_impact: categorical functional impact (neutral, low, medium, high)

SV: UniProt sequence version

MSA: multiple sequence alignment used to compute the scores (name-only)

MAV: MutationAssessor version


 

msa.zip

Multiple sequence alignments in FASTA format, brotli-compressed. File name corresponds to the MSA column in the scores file. For each sequence, the Cluster field in the FASTA header indicates which subfamily the sequence belongs to after clustering by combinatorial entropy optimization (CEO). 

 

Citations:

Yang Su, Xiang Li, Boris Reva, Yevgeniy Antipin, Ino de Bruijn, Nikolaus Schultz and Chris Sander (2025)

Boris Reva, Yevgeniy Antipin and Chris Sander (2011) Predicting the functional impact of protein mutations: application to cancer genomics. Nucleic Acids Research, 39, e118. doi:10.1093/nar/gkr407
DOI: 10.5281/zenodo.15305085
title: MutationAssessor r4 functional impact scores and multiple sequence alignments for human proteins

description: MutationAssessor Release 4

mutationassessor4_scores.tsv.zip

Predicted functional impact score and functional impact for single amino acid subsitution mutations in human proteins.

Columns:



uniprotId: protein's UniProt accession

hgvspShort: amino acid change and position

F_score: functional impact score

F_impact: categorical functional impact (neutral, low, medium, high)

SV: UniProt sequence version

MSA: multiple sequence alignment used to compute the scores (name-only)

MAV: MutationAssessor version


 

msa.zip

Multiple sequence alignments in FASTA format, brotli-compressed. File name corresponds to the MSA column in the scores file. For each sequence, the Cluster field in the FASTA header indicates which subfamily the sequence belongs to after clustering by combinatorial entropy optimization (CEO). 

 

Citations:

Yang Su, Xiang Li, Boris Reva, Yevgeniy Antipin, Ino de Bruijn, Nikolaus Schultz and Chris Sander (2025)

Boris Reva, Yevgeniy Antipin and Chris Sander (2011) Predicting the functional impact of protein mutations: application to cancer genomics. Nucleic Acids Research, 39, e118. doi:10.1093/nar/gkr407
DOI: 10.21233/n30x23
title: Blue Mounds Creek pollen dataset

description: Raw data for the Blue Mounds Creek pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.uxgmqm
title: Occurrence Download

description: A dataset containing 11974 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Lepus granatensis)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 11974 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015767-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3wmjn4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Lepus granatensis)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015770-250802193616735/datasets/export for details.
DOI: 10.15468/dl.7f78mz
title: Occurrence Download

description: A dataset containing 460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "GadmGid is DEU.1.20_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Coccinellidae"
 ]
}

 The dataset includes 460 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015768-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9dtyd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Lepus granatensis)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015771-250802193616735/datasets/export for details.
DOI: 10.15139/s3/qh492v
title: Prothrombotic Biomarkers are not Altered by Wood Smoke: A Pilot Controlled Exposure Study

description: Replication data for "Prothrombotic Biomarkers are not Altered by Wood Smoke: A Pilot Controlled Exposure Study". This entry contains the raw data used to make the corresponding figures and assertions from the manuscript.
DOI: 10.21233/n35c8d
title: Lake BN3 pollen surface sample dataset

description: Raw data for the Lake BN3 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n31k53
title: Lake BN6 pollen surface sample dataset

description: Raw data for the Lake BN6 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.zzt4pz
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myzomela pammelaena)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 238 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015772-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkbbpj
title: Occurrence Download

description: A dataset containing 3106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cocos nucifera",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3106 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015773-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n3gx12
title: Lake BN2B pollen surface sample dataset

description: Raw data for the Lake BN2B pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.2zpbke
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bodianus undulosus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015775-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/cnb8qc
title: Supplemental Files for: Aerosolized Vitamin D Attenuates Ozone-Induced Inflammation and Transcriptional Responses Through Membrane Antioxidant Effects in Human Bronchial Epithelial Cells

description: Ozone exposure can lead to increased risk of infection, exacerbation or pathogenesis of lung disease, and a number of systemic health effects. As worldwide ambient ozone levels continue to cause adverse health effects, there is a need for prophylactic interventions to mitigate the harmful health effects of ozone. Vitamin D has well-established anti-inflammatory properties and circulating levels have been inversely associated with numerous lung pathologies including ozone-induced airway inflammatory responses and decrements in lung function. Interestingly, studies on oral supplementation to treat lung disease have produced mixed results, potentially due to unfavorable pharmacokinetics in the pulmonary endothelium leading to failure of circulating vitamin D to reach the airways. Here, we tested a novel intervention using vitamin D aerosols to attenuate ozone-induced pathological responses in primary human bronchial epithelial cells. We exposed cells at an air-liquid-interface to ozone following vitamin D pre-treatment and found that both basolateral and apical aerosol pretreatment with vitamin D reduced the ozone-induced secretion of the pro-inflammatory cytokine, IL-8. Similarly, ozone-induced upregulation of inflammation- and oxidative stress-related genes such as IL-8, FFAR2, COX-2, and NFKB2 were downregulated with both basolateral and apical aerosol vitamin D treatment and gene set enrichment analysis (GSEA) revealed that vitamin D treatment reversed ozone-induced increases in inflammation, oxidative stress, and immune dysfunction pathways. In addition, vitamin D pre-treatment attenuated lipid peroxidation, glutathione oxidation, and formation of ozone-derived oxysterols, indicating that vitamin D may act as a membrane antioxidant. These results provide support for the use of vitamin D as a protectant against inhaled oxidants and support the need for further investigation into inhaled vitamin D as a novel route of delivery for treating lung pathologies.
DOI: 10.15468/dl.ukqbvp
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cocos nucifera",
 "Country is Venezuela (Bolivarian Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015774-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k43rwn
title: Occurrence Download

description: A dataset containing 182633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aria edulis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 182633 records from 892 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015761-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdpubd
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myzomela pulchella)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 53 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015776-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/23781
title: Chandra X-ray Observatory ObsId 23781

description: Microlensing a Quasar's Accretion Disk
DOI: 10.5519/qd.mpzrlb3x
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.21233/n34c7q
title: Bog A Pond pollen dataset

description: Raw data for the Bog A Pond pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.7fa9qa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Phylloscopus ibericus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015777-250802193616735/datasets/export for details.
DOI: 10.15468/dl.j9z942
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Phylloscopus ibericus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015778-250802193616735/datasets/export for details.
DOI: 10.60520/ieda/113915
title: Geochemistry and geochronology data of the Ranomena chromitite, Madagascar

description: This dataset encompasses the following aspects: (1) The major oxide and trace element compositions of the constituent minerals within the Ranomena chromitites; (2) The geochemistry and geochronology data of zircons derived from the Ranomena chromitites; and (3) The whole - rock platinum group element data of the Ranomena chromitites.
DOI: 10.17866/rd.salford.3406942
title: Carbon sequestration scores for research sites within Manchester and Salford

description: The file contains the carbon sequestration scores for the 49 research sites and the procedures that were followed in order to calculate the scores.  The file also contains a graph showing the distribution of the scores for all the 49 sites.
DOI: 10.17866/rd.salford.3406942.v1
title: Carbon sequestration scores for research sites within Manchester and Salford

description: The file contains the carbon sequestration scores for the 49 research sites and the procedures that were followed in order to calculate the scores.  The file also contains a graph showing the distribution of the scores for all the 49 sites.
DOI: 10.15468/dl.cq6xdr
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Brachyhypopomus bennetti)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 58 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015780-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yv5tdp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Phylloscopus ibericus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015779-250802193616735/datasets/export for details.
DOI: 10.21233/n30k65
title: Bog D Pond pollen dataset

description: Raw data for the Bog D Pond pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n3fx24
title: Bolotnyii Stream Exposure 117 pollen dataset

description: Raw data for the Bolotnyii Stream Exposure 117 pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.w5dhcq
title: Occurrence Download

description: A dataset containing 3889 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myzomela rosenbergii)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 3889 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015781-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79r62p
title: Occurrence Download

description: A dataset containing 8959 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myzomela rubratra)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 8959 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015784-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4aduaq
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eques lanceolatus"
 ]
}

 The dataset includes 258 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015782-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avruuw
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sansevieria hyacinthoides",
 "Country is Antigua and Barbuda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015786-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n3bw2v
title: Boriack Bog pollen dataset

description: Raw data for the Boriack Bog pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.wx2tah
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sansevieria hyacinthoides",
 "Country is Bahamas",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015787-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.