cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26603539.v1
title: Additional file 3 of Targeting the glycine-rich domain of TDP-43 with antibodies prevents its aggregation in vitro and reduces neurofilament levels in vivo

description: Additional file 3: Table S2. Full Gene Ontology enrichment analysis for differentially expressed genes from TargetALS patients in spinal cord and genes expressed in rNLS8 mice, each both compared to non-diseased controls. Selected data are shown in Fig. 6C.
DOI: 10.6084/m9.figshare.26603536.v1
title: Additional file 2 of Targeting the glycine-rich domain of TDP-43 with antibodies prevents its aggregation in vitro and reduces neurofilament levels in vivo

description: Additional file 2: Table S1. Differential expression analysis of control PBS, TDP-PBS, TDP10+12, and TDP15 neocortex using DESeq2 as described in the methods. Samples are compared to either ctrl PBS or TDP-PBS. In column D “−1” and “+1” indicate significant genes and the direction of change.
DOI: 10.6084/m9.figshare.26667109
title: Additional file 1 of Investigate the relationship between the retraction reasons and the quality of methodology in non-Cochrane retracted systematic reviews: a systematic review

description: Additional file 1. Search strategy.
DOI: 10.6084/m9.figshare.26667109.v1
title: Additional file 1 of Investigate the relationship between the retraction reasons and the quality of methodology in non-Cochrane retracted systematic reviews: a systematic review

description: Additional file 1. Search strategy.
DOI: 10.6084/m9.figshare.26667115
title: Additional file 3 of Investigate the relationship between the retraction reasons and the quality of methodology in non-Cochrane retracted systematic reviews: a systematic review

description: Additional file 3.
DOI: 10.15468/dl.vj5zs6
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.418909 -32.53093, 148.418909 -32.537668, 148.414418 -32.537668, 148.414418 -32.548897, 148.418909 -32.548897, 148.418909 -32.551143, 148.421155 -32.551143, 148.421155 -32.53093, 148.418909 -32.53093))"
 ]
}

 The dataset includes 35 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066928-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26667115.v1
title: Additional file 3 of Investigate the relationship between the retraction reasons and the quality of methodology in non-Cochrane retracted systematic reviews: a systematic review

description: Additional file 3.
DOI: 10.34770/v0v4-3h52
title: Spike Trains of Retinal Ganglion Cells Viewing a Repeated Natural Movie

description: This archive contains spike trains simultaneously recorded from ganglion
 cells in the tiger salamander retina with a multi-electrode array while
 viewing a repeated natural movie clip. These data have been analyzed in
 previous papers, notably Puchalla et al. Neuron 2005 and Schneidman et al.
 Nature 2006.
DOI: 10.15468/dl.zj5ft7
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((144.623509 -36.975367, 144.623509 -36.979858, 144.628001 -36.979858, 144.628001 -36.982104, 144.634738 -36.982104, 144.634738 -36.977612, 144.632492 -36.977612, 144.632492 -36.975367, 144.634738 -36.975367, 144.634738 -36.968629, 144.632492 -36.968629, 144.632492 -36.966383, 144.628001 -36.966383, 144.628001 -36.977612, 144.625755 -36.977612, 144.625755 -36.975367, 144.623509 -36.975367)), ((144.623509 -36.975367, 144.623509 -36.970875, 144.619017 -36.970875, 144.619017 -36.975367, 144.623509 -36.975367)), ((144.634738 -36.982104, 144.634738 -36.98435, 144.628001 -36.98435, 144.628001 -36.986596, 144.632492 -36.986596, 144.632492 -36.988841, 144.636984 -36.988841, 144.636984 -36.991087, 144.63923 -36.991087, 144.63923 -36.98435, 144.645967 -36.98435, 144.645967 -36.982104, 144.634738 -36.982104)), ((144.634738 -36.968629, 144.63923 -36.968629, 144.63923 -36.961892, 144.634738 -36.961892, 144.634738 -36.968629)))"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066929-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6bx42
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-48.09705 -15.73352,-48.10724 -15.7421,-48.10787 -15.76508,-48.0996 -15.77947,-48.08082 -15.78866,-48.06904 -15.78866,-48.05726 -15.79203,-48.05058 -15.7905,-48.04453 -15.76937,-48.04931 -15.74854,-48.06363 -15.7372,-48.09705 -15.73352))",
 "HasGeospatialIssue is false",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 253 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066931-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26569501.v1
title: Additional file 1 of Role of epigenetics in the clinical evolution of COVID-19 disease. Epigenome-wide association study identifies markers of severe outcome

description: Additional file 1: Detailed clinical information of COVID-19 patients.
DOI: 10.6084/m9.figshare.26667163
title: Additional file 2 of Genomic and transcriptomic analysis of breast cancer identifies novel signatures associated with response to neoadjuvant chemotherapy

description: Additional file 2: Table S1. The summary of clinical information and sequencing data of the NACBC sequencing set. Table S2. Characteristics of patients included in the NACBC sequencing and validation sets. Table S3. The relative weights of the COSMIC mutational signatures. Table S4. Changed somatic variants in CNR2, KIAA1549, or CCDC168 after NAC. Table S5. Differences in the expression levels of genes related to KEGG_ANTIGEN_PROCESSING_AND_PRESENTATION, GOBP_POSITIVE_REGULATION_OF_GAMMA_DELTA_T_CELL_ACTIVATION, and HALLMARK_ANGIOGENESIS pathway between pre- and post-treatment. Table S6. Differences in the expression levels of genes related to HALLMARK_DNA_REPAIR pathway between the nonresponsive and responsive groups. Table S7. Significantly mutated genes in the pre-treatment tumors. Table S8. The frequency of non-synonymous SMG between the nonresponsive and responsive tumors.Table S9. Prediction of biological functional impact of somatic variants on protein functions. Table S10. Association of ADGRA2 or ADRB3 protein expression with clinicopathological parameters in the NACBC validation set.
DOI: 10.6084/m9.figshare.26667163.v1
title: Additional file 2 of Genomic and transcriptomic analysis of breast cancer identifies novel signatures associated with response to neoadjuvant chemotherapy

description: Additional file 2: Table S1. The summary of clinical information and sequencing data of the NACBC sequencing set. Table S2. Characteristics of patients included in the NACBC sequencing and validation sets. Table S3. The relative weights of the COSMIC mutational signatures. Table S4. Changed somatic variants in CNR2, KIAA1549, or CCDC168 after NAC. Table S5. Differences in the expression levels of genes related to KEGG_ANTIGEN_PROCESSING_AND_PRESENTATION, GOBP_POSITIVE_REGULATION_OF_GAMMA_DELTA_T_CELL_ACTIVATION, and HALLMARK_ANGIOGENESIS pathway between pre- and post-treatment. Table S6. Differences in the expression levels of genes related to HALLMARK_DNA_REPAIR pathway between the nonresponsive and responsive groups. Table S7. Significantly mutated genes in the pre-treatment tumors. Table S8. The frequency of non-synonymous SMG between the nonresponsive and responsive tumors.Table S9. Prediction of biological functional impact of somatic variants on protein functions. Table S10. Association of ADGRA2 or ADRB3 protein expression with clinicopathological parameters in the NACBC validation set.
DOI: 10.6084/m9.figshare.26569504.v1
title: Additional file 2 of Role of epigenetics in the clinical evolution of COVID-19 disease. Epigenome-wide association study identifies markers of severe outcome

description: Additional file 2: List of the 880 significant differentially methylated CpG sites obtained by the RnBeads Differential Methylation analysis. Annotation of Illumina positions was obtained using wANNOVAR. The different columns are explained as: Illumina_TargetID: site id; Chr: chromosome of the site; Start: start coordinate of the site; End: end coordinate of the site; mean.diff: difference in methylation means between the two groups: mean.g1(mild)-mean.g2(severe); diffmeth.p.val: p-value obtained from linear models employed in the limma package; diffmeth.p.adj.fdr: FDR adjusted p-value of all sites, Epimutation_Type: classification of the differentially methylated site; Func.refGene: CpG site classification according to the position of the annotated gene; Gene.refGene: Gene name associated with the differentially methylated site; GeneDetail.refGene: relative distance(s) from nearest gene(s); 21_CpG_SIGNATURE: CpG univocally associated to Group 4.
DOI: 10.6084/m9.figshare.26569621.v1
title: Additional file 6 of Proximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5

description: Additional file 6. Triplicate LC-MS/MS data from experiment 2 using NT-KDM5, CT-KDM5, dCas9:TurboID, TurboID alone and control.
DOI: 10.6084/m9.figshare.26667169
title: Additional file 2 of Phytoplankton ecology in the early years of a boreal oil sands end pit lake

description: Additional file 2. Tables.
DOI: 10.6084/m9.figshare.26667169.v1
title: Additional file 2 of Phytoplankton ecology in the early years of a boreal oil sands end pit lake

description: Additional file 2. Tables.
DOI: 10.6084/m9.figshare.26569624
title: Additional file 7 of Proximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5

description: Additional file 7. Human orthologs of the 87 high confidence KDM5 interactors identified in Drosophila.
DOI: 10.6084/m9.figshare.26569615.v1
title: Additional file 4 of Proximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5

description: Additional file 4. Quadruplicate LC-MS/MS data from experiment 1 using NT-KDM5, CT-KDM5, TurboID alone and control.
DOI: 10.6084/m9.figshare.26667196
title: Additional file 2 of Single-cell sequencing reveals the heterogeneity of B cells and tertiary lymphoid structures in muscle-invasive bladder cancer

description: Additional file 2: Table S1. Patients information and sequencing statistics.
DOI: 10.6084/m9.figshare.26667196.v1
title: Additional file 2 of Single-cell sequencing reveals the heterogeneity of B cells and tertiary lymphoid structures in muscle-invasive bladder cancer

description: Additional file 2: Table S1. Patients information and sequencing statistics.
DOI: 10.15468/dl.j29ard
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myrmechis japonica (Rchb.f.) Rolfe"
 ]
}

 The dataset includes 160 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044905-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cr5y89
title: Occurrence Download

description: A dataset containing 8078 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium caesium (Fr.) Fr."
 ]
}

 The dataset includes 8078 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245083-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nv224h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bryozoa",
 "DatasetKey is Leicestershire and Rutland Environmental Records Centre records 2015-2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210552-230224095556074/datasets/export for details.
DOI: 10.15468/dl.5j7cgm
title: Occurrence Download

description: A dataset containing 12982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Hong Kong, China, Macao)",
 "GadmGid is one of (CHN.HKG, CHN.6_1, CHN.MAC)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ardeola bacchus (Bonaparte, 1855)"
 ]
}

 The dataset includes 12982 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0257234-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92q7ry
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phalacrus luteicornis Champion",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228047-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdzk6e
title: Occurrence Download

description: A dataset containing 9269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, South America)",
 "CoordinateUncertaintyInMeters 12799.0-1000000.0",
 "TaxonKey is Procyon lotor (Linnaeus, 1758)"
 ]
}

 The dataset includes 9269 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264879-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w43ckd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bryozoa",
 "DatasetKey is BD de la plateforme partagée pour la diffusion des données naturalistes de Normandie-Centralisation des données d'études sur le territoire de la Communauté de Communes de la Côte d'Albâtre",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210529-230224095556074/datasets/export for details.
DOI: 10.15468/dl.bxp3c2
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lagrezia minutiflora Schinz"
 ]
}

 The dataset includes 21 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003196-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spjqbh
title: Occurrence Download

description: A dataset containing 5376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Système d'Information sur la Nature et les Paysages d'Ile de France - Données de la structure Département 77 provenant de la base de donnée du SINP Île-de-France CETTIA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 5376 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217068-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h272e9
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium rahmeri Phil."
 ]
}

 The dataset includes 57 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007809-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fs4dgn
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tipos de Diatomeas de América del Sur contenidos en la Colección Joaquín Frenguelli, División Ficología “Dr. Sebastián A. Guarrera”"
 ]
}

 The dataset includes 74 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031180-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jehek
title: Occurrence Download

description: A dataset listing the 368 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Maritimes Summer Research Vessel Surveys, Maritimes Spring Research Vessel Surveys, NOAA Deep Sea Corals Research and Technology Program)",
 {
 "or" : [
 "Geometry POLYGON((-66.20923 42.18778,-60.2784 42.18778,-60.2784 44.0737,-64.91238 44.12725,-66.20923 44.0737,-66.20923 43.5756,-66.20923 42.18778))",
 "Geometry POLYGON((-61.07305 45.1655,-63.64614 44.59597,-66.10053 43.76208,-66.9245 43.05871,-65.96275 40.16324,-58.75237 42.99927,-61.07305 45.1655))"
 ]
 },
 "Year 2019-2023"
 ]
}

 The dataset's 368 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245058-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5uqwzu
title: Occurrence Download

description: A dataset containing 64414323 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Spain"
 ]
}

 The dataset includes 64414323 records from 2479 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005435-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0187501.10fu
title: SH0187501.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0187502.10fu
title: SH0187502.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0187503.10fu
title: SH0187503.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0187504.10fu
title: SH0187504.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.