cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/7wzvwy65p4.1
title: Yield loss and pest pressure databases for "Global crop impacts, yield losses and action thresholds for fall armyworm (Spodoptera frugiperda): A review"

description: In our study "Global crop impacts, yield losses and action thresholds for fall armyworm (Spodoptera frugiperda): a review", we reviewed the global literature on yield loss caused by FAW in both its native and invasive ranges. We conducted two comprehensive reviews of the peer-reviewed published and grey literature to establish all publicly available data on: (1) available crop loss reports, (2) the relationships between infestation density/level and yield loss, and (3) economic injury levels and management thresholds currently in use for FAW. We presented the results from all three literature reviews, and here, we provide the raw data files for all data collected through the first and second comprehensive reviews. The methodologies used in creating these datasets as well as the data fields used to guide the compilation of relevant experimentally derived or reported yield loss data can be found in the Methods section and Table 1 of the original paper..
DOI: 10.17632/mt6rzbsf6p.1
title: Dataset for Comparing Daytime Sleepiness in Parkinson Disease by Narcolepsy HLA DQB1 Risk and Protective Alleles

description: Data on daytime sleepiness in patients with Parkinson disease, narcolepsy HLA DQB1 risk and protective alleles and dopaminergic drug use. The data was collected in a convenience sample of 150 participants with Parkinson disease from Albany Medical Center, Albany, New York. Data available for each participant includes demographic data, past medical history, medications, the Unified Parkinson Disease Rating Scale, Schwab and England scale, Hoehn and Yahr scale, the Montreal Cognitive Assessment, the modified Epworth Sleepiness Scale, the Parkinson Disease Sleep Scale version 2, the Mayo Sleep questionnaire (select questions). Dopaminergic drugs are expressed are levodopa equivalent daily dosage. All participants were genotyped for narcolepsy DQB1 risk alleles. A data dictionary is included.
DOI: 10.17632/s68w3yfpzg.1
title: Motor_Imagery

description: 该数据集为8名受试者的曲腕、屈肘、握拳3个动作的运动想象数据集，前40个通道记录脑电信号，其他通道记录肌电信号
DOI: 10.5281/zenodo.4767610
title: Data related to the article "Evaluation of Oxford Nanopore MinION RNA-seq performance for human primary cells"

description: This record contains raw data related to the article “Evaluation of Oxford Nanopore MinION RNA-seq performance for human primary cells". <strong>Abstract: </strong>Transcript sequencing is a crucial tool for gaining a deep understanding of biological processes in diagnostic and clinical medicine. Given their potential to study novel complex eukaryotic transcriptomes, long-read sequencing technologies are able to overcome some limitations of short-read RNA-seq approaches. Oxford Nanopore Technologies (ONT) offers the ability to generate long-read sequencing data in real-time via portable protein nanopore USB devices. This work aimed to provide the user with the number of reads that should be sequenced, through ONT MinION platform, to reach the desired accuracy level for a human cell RNA study. We sequenced three cDNA libraries prepared from poly-adenosine RNA of human primary cardiac fibroblasts. Since the runs were comparable, they were combined in a total dataset of 48 million reads. Synthetic datasets with different sizes were generated starting from the total and analyzed in terms of the number of identified genes and their expression levels. As expected, an improved sensitivity was obtained increasing the sequencing depth, in particular for the non-coding genes. The reliability of expression levels was assayed by i) comparison with PCR quantifications of selected genes and ii) by the implementation of a user-friendly multiplexing method in a single run.
description: This work was supported by the Italian Ministry of Health funds (Ricerca Finalizzata: GR-2018-12366423; ERA-CVD: PICASSO-JTC-2018-042) and by Fondazione Gigi e Pupa Ferrari ONLUS (FPF-14).
DOI: 10.5281/zenodo.4704163
title: Data related to the article "Evaluation of Oxford Nanopore MinION RNA-seq performance for human primary cells"

description: This record contains raw data related to the article “Evaluation of Oxford Nanopore MinION RNA-seq performance for human primary cells". <strong>Abstract: </strong>Transcript sequencing is a crucial tool for gaining a deep understanding of biological processes in diagnostic and clinical medicine. Given their potential to study novel complex eukaryotic transcriptomes, long-read sequencing technologies are able to overcome some limitations of short-read RNA-seq approaches. Oxford Nanopore Technologies (ONT) offers the ability to generate long-read sequencing data in real-time via portable protein nanopore USB devices. This work aimed to provide the user with the number of reads that should be sequenced, through ONT MinION platform, to reach the desired accuracy level for a human cell RNA study. We sequenced three cDNA libraries prepared from poly-adenosine RNA of human primary cardiac fibroblasts. Since the runs were comparable, they were combined in a total dataset of 48 million reads. Synthetic datasets with different sizes were generated starting from the total and analyzed in terms of the number of identified genes and their expression levels. As expected, an improved sensitivity was obtained increasing the sequencing depth, in particular for the non-coding genes. The reliability of expression levels was assayed by i) comparison with PCR quantifications of selected genes and ii) by the implementation of a user-friendly multiplexing method in a single run.
description: This work was supported by the Italian Ministry of Health funds (Ricerca Finalizzata: GR-2018-12366423; ERA-CVD: PICASSO-JTC-2018-042) and by Fondazione Gigi e Pupa Ferrari ONLUS (FPF-14).
DOI: 10.17632/cm3kzd3yj7.1
title: Energy Poverty, Health and Education outcomes: evidence from the developing world

description: Dataset for the paper titled Energy Poverty, Health and Education outcomes: evidence from the developing world
DOI: 10.17632/m2wm6xhjj5.1
title: Data for different plastic category soils mixed with waste plastic materials for soil reinforcement

description: Waste plastic materials have been causing environmental pollution problems. Soil reinforcement using waste plastic materials can improve the strength of the soil. Hence, it will be beneficial for different civil engineering structures like earth retaining structures, embankment, foundations, road construction, etc. The data on geotechnical properties of soils having medium plastic, high plastic and low plastic category were generated for the different locations of Kanpur city, India. Waste plastics like polythene bags and plastic bottles cut into uniform small pieces, made perforated, mixed in different proportions with these soils and analyzed for different geotechnical properties. The researcher can use these data to find out the bearing capacity and California bearing ratio for the different proportions of the reinforced soils. In addition, these data can help for carrying out study for other locations of the Kanpur city.
DOI: 10.17632/7jv6f2229g.1
title: raw data

description: raw data
DOI: 10.17632/98w8mfpmj2.1
title: PREVALENCE OF LOWER CROSS SYNDROME OWING TO SEDENTARY LIFESTYLE AMONG STUDENTS WITH OR WITHOUT LOW BACK PAIN: A CROSS- SECTIONAL STUDY

description: ABSTRACT Back ground: The present study focus on musculoskeletal pain prevailing in college students owing to sedentary lifestyle. Prolong periods of sitting leads to hip flexors tightness and abdominal weakness leading to back ache due to erector spinae muscles tightness. The present study is being conducted to evaluate the prevalence of lower cross syndrome in students. Purpose: To study prevalence of lower cross syndrome among students with sedentary lifestyle. Method: Students of within age group between 18-25 years with sedentary lifestyle were recruited. The participants will be selected by purposive sampling method. Lower cross syndrome will be assessed by postural assessment in lateral view. International physical activity questionnaire was filled. Muscular strength will be determined by oxford scale for Manual muscle testing. Modified-Modified Schober’s test will be used to determine lumbar range of motion and trunk extensor tightness. Iliopsoas muscle length testing was done with universal goniometer. Visual analog scale is used to assess the pain. Lower Extremity Functional Scale was filled. Result: Prevalence of lower cross syndrome was 1.4% in college going individuals with sedentary lifestyle as outcome of the study. Conclusion: The study concluded that there is minimal prevalence of lower cross syndrome in college students with sedentary lifestyle. Keywords: Musculoskeletal pain, Sedentary behavior, Lower cross syndrome
DOI: 10.5281/zenodo.4765682
title: Ozame/agi-industry: v1.0.1

description: Original data and graphs regarding a mapping study on the field of Artificial General Intelligence.
DOI: 10.5281/zenodo.4765660
title: Ozame/agi-industry: v1.0.1

description: Original data and graphs regarding a mapping study on the field of Artificial General Intelligence.
DOI: 10.17632/bwyjypnp74.1
title: Presentation

description: Presentation
DOI: 10.5519/qd.4zi0k5ee
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (344 records)
DOI: 10.6084/m9.figshare.13360207.v1
title: Using normalized difference vegetation index to estimate sesame drydown and seed yield

description: Sesame (<i>Sesamum indicum</i> L.) as an ancient crop has received wide attention in subtropical and temperate regions of the world. Yet there is limited data linking maturity with seed yield, which hampers sesame improvement. We used a multi-channel spectral sensor to measure canopy vegetation indices during the period of drydown to facilitate a rapid yield estimation for sesame genotypes under field conditions. We hypothesized that (a) a high normalized difference vegetation index (NDVI) at initial drydown would indicate a high yield; and (b) a rapid drydown rate would lead to a reduced seed yield. The results for 60 sesame genotypes confirmed the first hypothesis. Analysis of the NDVI data for the entire drydown period indicated that sesame genotypes with a higher initial NDVI showed an apparent trend of drying down faster and vice versa. This contradicts the second hypothesis and likely resulted from treating the full drydown as a linear process, which masked variations in NDVI in a short timeframe during initial drydown that could significantly impact the seed yield. However, the variations in NDVI during the initial nine days of drydown had a significant relationship with the measured seed yields, which was compatible with the prediction of the second hypothesis. To capture detailed changes in canopy features during sesame drydown, the value of making more frequent measurements of the vegetation indices from a wider time window was considered. Our study demonstrated that vegetation indices derived from a ground-based sensing tool were useful for characterizing the drydown process of sesame.
DOI: 10.6084/m9.figshare.13360207
title: Using normalized difference vegetation index to estimate sesame drydown and seed yield

description: Sesame (<i>Sesamum indicum</i> L.) as an ancient crop has received wide attention in subtropical and temperate regions of the world. Yet there is limited data linking maturity with seed yield, which hampers sesame improvement. We used a multi-channel spectral sensor to measure canopy vegetation indices during the period of drydown to facilitate a rapid yield estimation for sesame genotypes under field conditions. We hypothesized that (a) a high normalized difference vegetation index (NDVI) at initial drydown would indicate a high yield; and (b) a rapid drydown rate would lead to a reduced seed yield. The results for 60 sesame genotypes confirmed the first hypothesis. Analysis of the NDVI data for the entire drydown period indicated that sesame genotypes with a higher initial NDVI showed an apparent trend of drying down faster and vice versa. This contradicts the second hypothesis and likely resulted from treating the full drydown as a linear process, which masked variations in NDVI in a short timeframe during initial drydown that could significantly impact the seed yield. However, the variations in NDVI during the initial nine days of drydown had a significant relationship with the measured seed yields, which was compatible with the prediction of the second hypothesis. To capture detailed changes in canopy features during sesame drydown, the value of making more frequent measurements of the vegetation indices from a wider time window was considered. Our study demonstrated that vegetation indices derived from a ground-based sensing tool were useful for characterizing the drydown process of sesame.
DOI: 10.17632/wnv4bszczz.1
title: A dataset of fortunella margarita images

description: This article created a Fortunella margarita image data set. The images of fortunella margarita are divided into seven categories: (a) mature, (b) immature, (C) growing, (d) containing mature and immature in one image, (e) mature and growing, (f) immature and growing, and (g) image data at all three stages set. Then the dataset is sorted into two types of files: (1) Growth stage classification images (Growth stage classification) and (2) Manual labeling and annotation files (Labels). (1) Growth stage classification images: The number original images is 1031. Figure 1 shows examples of the original images for seven fortunella margarita categories. After data augmentation, we have a total of 6611 images. The size of image is 3024 * 4032 pixels, and the image format is JPEG. The dataset is divided into training, verification and test sets for machine learning or deep learning. Table 1 shows the number of training, verification and test images of the seven categories before data amplification. (2) Manual labeling and annotation files (Labels): This dataset contains 6611 annotation images. The file format is XML. Each file is manually labeled with the growth stage and location as shown in Figure 2. This file can be used by researchers to train deep learning models such as YoLo, R-CNN etc.
DOI: 10.17632/8fc3shg5yk.1
title: Cytotoxicity, genotoxicity, and cellular metal accumulation caused by professionally-applied fluoride products in patients with fixed orthodontic appliances

description: This study was to investigate the in vivo corrosion of fixed orthodontic appliances caused by APF, NGel, or FVa by evaluating the amount of metal ions in oral mucosal cells, their cytotoxicity, and their possible genotoxic effect. Buccal mucosal cells were collected before treatment (T1) and 3 months after appliance placement (T2). The cells were assayed for cell viability and underwent Papanicolaou staining. Micronuclei (MN) and degenerative nuclear alterations were scored using a light microscope. Cell metal content was quantified by inductively coupled plasma-mass spectrometry.
DOI: 10.17632/hjj3tx7n84.1
title: Reduced B12 uptake and increased gastrointestinal formate drive archaeome-mediated breath methane emission in humans.

description: Background Methane is an end product of microbial fermentation in the human gastrointestinal tract. This gas is solely produced by an archaeal subpopulation of the human microbiome. Increased methane production has been associated with abdominal pain, bloating, constipation, IBD, CRC or other conditions. Twenty percent of the (healthy) Western populations innately exhale substantially higher amounts (&gt;5 ppm) of this gas. The underlying principle for differential methane emission and its effect on human health is not sufficiently understood. Results We assessed the breath methane content, gastrointestinal microbiome, metagenome, metabolome, and dietary intake of one-hundred healthy young adults (female: n = 52, male: n = 48; mean age =24.1). On the basis of the amount of methane emitted, participants were grouped into high methane emitters (CH4 breath content 5-75 ppm) and low emitters (CH4 &lt; 5 ppm). The microbiomes of high methane emitters were characterized by a 1000-fold increase in Methanobrevibacter smithii. This archaeon co-occurred with a bacterial community specialized on dietary fibre degradation, which included members of Ruminococcaceae and Christensenellaceae. As confirmed by metagenomics and metabolomics, the biology of high methane producers was further characterized by increased formate and acetate levels in the gut. These metabolites were strongly correlated with dietary habits, such as vitamin, fat and fibre intake, and microbiome function, altogether driving archaeal methanogenesis. Conclusions This study enlightens the complex, multi-level interplay of host diet, genetics and microbiome composition/function leading to two fundamentally different gastrointestinal phenotypes and identifies novel points of therapeutic action in methane-associated disorders.
DOI: 10.17632/ng6zmxt4n4.1
title: Manually collected Citation Context Datasets from moderately cited Biomedical Publications
DOI: 10.17632/dr6bk5wv5c.1
title: Problem instances for the parallel serial-batch scheduling problem with incompatible job families, sequence-dependent setup times, and arbitrary sizes

description: This data set provides instances for the parallel serial-batch scheduling problem with incompatible job families, sequence-dependent setup times, and arbitrary sizes. The instances are classified by the following characteristics: - number of machines (m=1, 3, 4, 5, or 10), - number of jobs (n=15, 30, 60, 100, 200, or 400) , - number of incompatible job families (q=3, 5, 10, or 20), - distribution of jobs to families (uniform distribution (UD) or normal distribution (ND)), - capacity requirement scenarios - sizes (CRS1 with [1, 12], CRS2 with [1, 25], CRS3 with [1, 50], or CRS4 with [13, 38]), - setup severity factor (eta=0.25 or 0.75), - tardiness factor (tf=0.3 or 0.6), and - due date range factor (rdd=0.5 or 2.5). The maximum batch capacity (bc) is set to 50 for all instances. Job processing times and weights are drawn from discrete uniform distributions with the parameters [1, 100] and [1, 10] All the scheduling relevant data is given within the files, whereby each file represents one problem instance. A unique identifier is given by the filename and also in the text. In addition, best known objective values for several solution methods are listed in the files. The set S1 contains small instances with up to 60 jobs, whereas set s2 contains large instances with up to 400 jobs. Because not all instance characteristics combinations are reasonable with regard to batch capacity requirement scenarios, instance sets are restricted to those combinations with a sufficiently large approximated number of batches per machine (the last value of the folder names indicates the number of instances with the coreesponding characteristics). More details about the problem instances and solution methods are given in the article "Scheduling parallel serial-batch processing machines with incompatible job families, sequence-dependent setup times and arbitrary sizes" .
DOI: 10.17632/bby6h3zfsm.1
title: BHTV images and tensile fractures of ZK17-ZK41

description: The dataset is about BHTV images of the 11 boreholes showing structures in the deep crust and a collection of tensile fractures from which we identify tensile fractures and group them to analyze regional tectonic stress field evolution from Cretaceous to Cenozoic in the southern Jinzhou area.
DOI: 10.17632/z3wwjmzrzd.1
title: LINF_120007900

description: ornithine decarboxylase (ODC); Leishmania infantum
DOI: 10.17632/scz5fnzmrx.1
title: frame dip slide - square well

description: This file is supported to material and methods of research article
DOI: 10.17632/zvy52f7n33.1
title: Effects of dietary L-carnitine supplementation on the response to an inflammatory challenge in mid-lactating dairy cows: hepatic mRNA abundance of genes involved in fatty acid metabolism

description: Supplemental Figure S1. (A) Milk yield, (B) dry matter intake (DMI), and (C) net energy balance (EB) in cows fed non-supplemented (Control) or an L-carnitine-supplemented diet (Carnitine). Data are given as LS-means ± SE. Data for milk yield, DMI, and EB are from Meyer et al. (2021). Supplemental Figure S2. Blood concentrations of (A) insulin, (B) glucose, (C) ß-hydroxybutyrate (BHB), (D) fatty acids (FA) in cows fed non-supplemented (Control) or an L-carnitine-supplemented diet (Carnitine). Data are given as LS-means ± SE. Data for insulin, glucose, BHB, and FA are from Meyer et al. (2021). Supplemental Figure S3. Volcano plot visualizing the hepatic mRNA abundance of genes in cows fed non-supplemented (CON, n = 21) compared to those fed L-carnitine supplemented (CAR, n = 22) diets on d +14 relative to the LPS administration. The x-axis represents the mean of log2 fold-change (FC = 1.5) value, and the y-axis corresponds to the negative logarithm of the P-values (FDR = 0.05). Each dot represents a single mRNA.
DOI: 10.17632/s2dtmnkbkx.1
title: COVID19_Culture

description: COVID-19 information adoption based on cultural dimensions
DOI: 10.17632/8zcy4bgwzy.2
title: Was Overseas Koreans’ Voting Rational during the COVID-19 Pandemic?: Findings from Twitter
DOI: 10.17632/cj8j75jvc5.1
title: Lid of multi-channel rectangle dish

description: This is supported to material and methods of research articles
DOI: 10.17632/kytj6c7372.1
title: Mutli - channel rectangle dish

description: This is supported to material and methods of research article
DOI: 10.17632/wwtn2p3842.1
title: PREVALENCE OF PAIN IN ACHILLES TENDON IN RECREATIONAL BADMINTON PLAYERS: A CROSS SECTIONAL STUDY

description: ABSTRACT Background:Badminton game involves sudden jerky movements. Sudden start and stops wear out the body and require plenty of strength and motor skills for acceleration, deceleration and then immediate acceleration. Achilles tendinopathy is commonly seen in badminton players as it involves jumping along withquick changes in direction. Several studies were done on sub elite badminton players but there was a lack of literature in study was conducted on this topic. Objectives:To evaluate the clinical severity of pain in the Achilles tendon in recreational badminton players. Method:The study group consisted of 92 recreational badminton players, 42 males and 50 females, both aged between 16-55 years who are playing badminton for at least once in week. VISA-A questionnaire was used as the outcome tool to measure the severity of pain in the Achilles region. Each subject was given the questionnaire and according to the score they were further evaluated. Results: Prevalence of pain in Achilles tendon in recreational badminton is 19.5%. Conclusion: Pain in Achilles tendon in recreational badminton is mild as compare to sub elite players