cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3168352.v1
title: University of Manchester

description: This spreadsheet contains details of article processing charges (APCs) paid by the University of Manchester during 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.3168376.v3
title: Kirkegaard2016 - Genome binning of Candidatus Fermentibacter daniensis from AD at Damhusaaen WWTP

description: "Kirkegaard2016_Hyd24-12_Dam_1.html"This html document illustrates the binning of the Dam_1 Hyd24-12 genome that was published in Kirkegaard et al 2016 (https://doi.org/10.1038/ismej.2016.43). The binning was carried out before the development of the mmgenome package (http://madsalbertsen.github.io/mmgenome/) and used the "alphahull" package for selections. As I cannot remember the package version I have not been able to reproduce it since they released an update.
DOI: 10.6084/m9.figshare.3168328
title: Sesame GBS sequence and marker data

description: merged GBS tags and sample key files enable sequence data analysis.SNP alleles, locations, markers mapped to the linkage groups and information on polymorphic SSR markers are provided in excel files.<br>
DOI: 10.6084/m9.figshare.3168259
title: Test radiometers measure the radiance temperature of the RSMAS and NIST blackbodies during the 2009 laboratory radiometer comparison.

description: <br>Test radiometers measure the radiance temperature of the RSMAS and NIST blackbodies during the 2009 laboratory radiometer comparison.
DOI: 10.6084/m9.figshare.3168376.v2
title: Genome binning of Candidatus Fermentibacter daniensis from AD at Damhusaaen WWTP

description: "Kirkegaard2016_Hyd24-12_Dam_1.html"This html document illustrates the binning of the Dam_1 Hyd24-12 genome that was published in Kirkegaard et al 2016 (https://doi.org/10.1038/ismej.2016.43). The binning was carried out before the development of the mmgenome package (http://madsalbertsen.github.io/mmgenome/) and used the "alphahull" package for selections. As I cannot remember the package version I have not been able to reproduce it since they released an update.
DOI: 10.6084/m9.figshare.3168262
title: The AMBER radiometer

description: <br>The AMBER radiometer measure the temperature of the test blackbodies during the 2009 laboratory blackbody comparison at NPL.
DOI: 10.6084/m9.figshare.3168250
title: Cicadetta brevipennis Integrative Taxonomy

description: Worksheets containing raw data (acoustics, genetics, morphology) for the description of the Cicadetta brevipennis taxa group:<br>Cicadetta brevipennis brevipennis, C. b. hippolaidica ssp. n., C. b. litoralis ssp. n., C. petryi.<br>
DOI: 10.6084/m9.figshare.3168256
title: Test radiometers monitoring the SST from the University of Miami pier during the 2009 comparison.

description: <br>Test radiometers monitoring the SST from the University of Miami pier during the 2009 comparison.
DOI: 10.17632/s5c29frjw9.1
title: HCI experiment data

description: These are log files from an experiment: glove vs mouse
DOI: 10.6084/m9.figshare.3168262.v1
title: The AMBER radiometer

description: <br>The AMBER radiometer measure the temperature of the test blackbodies during the 2009 laboratory blackbody comparison at NPL.
DOI: 10.6084/m9.figshare.3168256.v1
title: Test radiometers monitoring the SST from the University of Miami pier during the 2009 comparison.

description: <br>Test radiometers monitoring the SST from the University of Miami pier during the 2009 comparison.
DOI: 10.6084/m9.figshare.3168226
title: Questionnaire Env. Competences Pre-service Teachers

description: <b>The objective of this questionnaire is to analyse various aspects related to the environmental competences that future primary school teachers have in theirs last year of their training at the university. Answer the questions will not take you more than about 20-25 minutes and your help will be very useful. All data are strictly confidential and under no circumstances we are interested in identifying people who answer the questionnaire.</b>
DOI: 10.6084/m9.figshare.3168229
title: Kirkegaard2016 - Metagenomes from AD at Viborg WWTP

description: R formatted metagenome dataset:"Kirkegaard2016_Vib.RData" for extracting genomes from metagenomes. This dataset is based on sequencing of DNA from the anaerobic digester at Viborg WWTP.<br><br>
DOI: 10.6084/m9.figshare.3168226.v1
title: Questionnaire Env. Competences Pre-service Teachers

description: <b>The objective of this questionnaire is to analyse various aspects related to the environmental competences that future primary school teachers have in theirs last year of their training at the university. Answer the questions will not take you more than about 20-25 minutes and your help will be very useful. All data are strictly confidential and under no circumstances we are interested in identifying people who answer the questionnaire.</b>
DOI: 10.6084/m9.figshare.3168229.v2
title: Kirkegaard2016 - Metagenomes from AD at Viborg WWTP

description: R formatted metagenome dataset:"Kirkegaard2016_Vib.RData" for extracting genomes from metagenomes. This dataset is based on sequencing of DNA from the anaerobic digester at Viborg WWTP.<br><br>
DOI: 10.6084/m9.figshare.3168220
title: Kirkegaard2016 - Metagenomes from AD at Randers WWTP

description: R formatted metagenome dataset:"Kirkegaard2016_Ran.RData" for extracting genomes from metagenomes. This dataset is based on sequencing of DNA from the anaerobic digester at Randers WWTP.<br><br>
DOI: 10.6084/m9.figshare.3168229.v1
title: Kirkegaard2016_Vib.RData

description: R formatted metagenome dataset.
DOI: 10.6084/m9.figshare.3168208
title: First report of the point-of-care TEG: A technical validation study of the TEG-6S system

description: Thrombelastography (TEG) measured by the TEG5000 Hemostasis Analyzer is an established but the labor-intensive method for assessing global hemostasis. The first true point-of-care TEG, the TEG6s system, uses resonance-frequency viscoelasticity measurements and a disposable multi-channel microfluidic cartridge to assess hemostasis and response to antiplatelet therapy. TEG assays (<i>n</i> = 5,100) were performed on the blood of healthy volunteers (<i>n</i> = 157) and patients undergoing coronary revascularization at three hospitals (<i>n</i> = 300). The results from the TEG6s were compared with the conventional TEG5000 in accordance with Clinical and Laboratory Standards Institute (CLSI) and FDA recommendations. Precision testing was conducted using blood from healthy donors, all assays were run for 5 consecutive days in duplicate using multiple operators, lots, and instruments. Reference ranges were comparable between the TEG systems. Deming regression analysis demonstrated a strong correlation between the two systems for the standard hemostasis tests (R <i>r =</i> 0.932, MA <i>r =</i> 0.972, LY30 <i>r =</i> 0.938). Method comparison analysis showed an acceptable agreement between PlateletMapping (PM) assays for measuring arachidonic acid (indicator of aspirin response)- and adenosine diphosphate (indicator of P2Y<sub>12</sub> inhibitor response)-induced platelet aggregation (total agreement = 90%, and 72%, respectively). TEG6s precision testing yielded low variability (CV 0–13%) in all measures. The new point-of-care TEG6s is associated with greater ease of use than the TEG5000 and provides precise results. The results correlated between methods for all variables. TEG6s is a promising device for near-patient hemostasis monitoring and future trials of personalized therapy designed to reduce bleeding and thrombosis.
DOI: 10.6084/m9.figshare.3168211
title: Management of oromandibular dystonia on a chorea acanthocytosis: a brief review of the literature and a clinical case

description: Background: Chorea acanthocytosis is an extremely rare neurodegenerative condition characterized by neuropsychiatric disturbances, movement disorders, neuropathy, seizures, and acanthocytosis. In this case report, the authors will present the management of the oromandibular movement disorders associated with this disease. Case Description: This case report describes the focal management of the severe orofacial manifestations associated with this condition. The therapeutic approach adopted to reduce the severe oromandibular movements, dysphagia, and the numerous oral ulcers was selective electromyography (EMG)-guided botulinum toxin application to the inferior head of the lateral pterygoid muscles and masseters. This would be applied to control severe and sudden oromandibular dystonia. Results: Through this procedure, the authors were able to reduce these severe oral manifestations, which had a major impact on the patient's quality of life, and temporarily improve vital functions, such as mastication, deglutition, and speech articulation. Conclusions: Electromyography-guided botulinum toxin application may be a useful tool in the multimodal management of this condition.
DOI: 10.6084/m9.figshare.3168208.v1
title: First report of the point-of-care TEG: A technical validation study of the TEG-6S system

description: Thrombelastography (TEG) measured by the TEG5000 Hemostasis Analyzer is an established but the labor-intensive method for assessing global hemostasis. The first true point-of-care TEG, the TEG6s system, uses resonance-frequency viscoelasticity measurements and a disposable multi-channel microfluidic cartridge to assess hemostasis and response to antiplatelet therapy. TEG assays (<i>n</i> = 5,100) were performed on the blood of healthy volunteers (<i>n</i> = 157) and patients undergoing coronary revascularization at three hospitals (<i>n</i> = 300). The results from the TEG6s were compared with the conventional TEG5000 in accordance with Clinical and Laboratory Standards Institute (CLSI) and FDA recommendations. Precision testing was conducted using blood from healthy donors, all assays were run for 5 consecutive days in duplicate using multiple operators, lots, and instruments. Reference ranges were comparable between the TEG systems. Deming regression analysis demonstrated a strong correlation between the two systems for the standard hemostasis tests (R <i>r =</i> 0.932, MA <i>r =</i> 0.972, LY30 <i>r =</i> 0.938). Method comparison analysis showed an acceptable agreement between PlateletMapping (PM) assays for measuring arachidonic acid (indicator of aspirin response)- and adenosine diphosphate (indicator of P2Y<sub>12</sub> inhibitor response)-induced platelet aggregation (total agreement = 90%, and 72%, respectively). TEG6s precision testing yielded low variability (CV 0–13%) in all measures. The new point-of-care TEG6s is associated with greater ease of use than the TEG5000 and provides precise results. The results correlated between methods for all variables. TEG6s is a promising device for near-patient hemostasis monitoring and future trials of personalized therapy designed to reduce bleeding and thrombosis.
DOI: 10.6084/m9.figshare.3168220.v2
title: Kirkegaard2016 - Metagenomes from AD at Randers WWTP

description: R formatted metagenome dataset:"Kirkegaard2016_Ran.RData" for extracting genomes from metagenomes. This dataset is based on sequencing of DNA from the anaerobic digester at Randers WWTP.<br><br>
DOI: 10.6084/m9.figshare.3168196
title: Semantic Similarity

description: Semantic similarity between DBpedia auto generated properties and DBpedia ontology properties using several semantic similarity measures.
DOI: 10.6084/m9.figshare.3168220.v1
title: Kirkegaard2016_Ran.RData

description: R formatted metagenome dataset.
DOI: 10.6084/m9.figshare.3168205
title: Selective induction of anti-inflammatory monocyte-platelet aggregates in a model of pulsatile blood flow at low shear rates

description: In patients with cardiovascular abnormalities or immunological disorders, an increased number of circulating leukocyte-platelet aggregates is observed. Leukocyte-platelet aggregates play an essential role in linking the hemostatic and immune systems. High shear stress and pro-coagulant and pro-inflammatory stimulants are known to activate platelets and promote the formation of aggregates. Pulsatile blood flow under low shear stress can also induce platelet activation in comparatively mild conditions. However, the effect of such events on leukocyte-platelet aggregates has not yet been investigated. To determine whether low shear stress affects the formation of aggregates, we established a simple “inverting rotation” method of inducing periodic changes in the direction of blood flow in combination with low shear stress. We demonstrated that after the inverting rotation treatment for 10–20 min more than 70% of monocytes selectively aggregated with platelets. The formation of monocyte-platelet complexes was inhibited by an anti-CD162 (PSGL-1) monoclonal antibody or a Ca<sup>2+</sup> chelator. The phagocytic activity of monocytes was augmented by inverting rotation, whereas phagocytosis mediated by granulocytes remained unaffected. Interestingly, the formation of monocyte-platelet complexes suppressed the production of pro-inflammatory cytokines such as interleukin (IL)-1β. At the same time, monocyte-platelet complexes augmented the expression of the anti-inflammatory cytokine IL-10. Our results suggest that platelet-bound monocytes show an anti-inflammatory phenotype under low shear stress conditions. Thus, our method provided new insights into the mechanisms of monocyte-platelet aggregate formation and regulation.
DOI: 10.6084/m9.figshare.3168211.v1
title: Management of oromandibular dystonia on a chorea acanthocytosis: a brief review of the literature and a clinical case

description: Background: Chorea acanthocytosis is an extremely rare neurodegenerative condition characterized by neuropsychiatric disturbances, movement disorders, neuropathy, seizures, and acanthocytosis. In this case report, the authors will present the management of the oromandibular movement disorders associated with this disease. Case Description: This case report describes the focal management of the severe orofacial manifestations associated with this condition. The therapeutic approach adopted to reduce the severe oromandibular movements, dysphagia, and the numerous oral ulcers was selective electromyography (EMG)-guided botulinum toxin application to the inferior head of the lateral pterygoid muscles and masseters. This would be applied to control severe and sudden oromandibular dystonia. Results: Through this procedure, the authors were able to reduce these severe oral manifestations, which had a major impact on the patient's quality of life, and temporarily improve vital functions, such as mastication, deglutition, and speech articulation. Conclusions: Electromyography-guided botulinum toxin application may be a useful tool in the multimodal management of this condition.
DOI: 10.6084/m9.figshare.3168196.v1
title: Semantic Similarity

description: Semantic similarity between DBpedia auto generated properties and DBpedia ontology properties using several semantic similarity measures.
DOI: 10.6084/m9.figshare.3168178
title: Loughborough University APCs 2015

description: This spreadsheet contains details of article processing charges (APCs) paid by Loughborough University during 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.3168205.v1
title: Selective induction of anti-inflammatory monocyte-platelet aggregates in a model of pulsatile blood flow at low shear rates

description: In patients with cardiovascular abnormalities or immunological disorders, an increased number of circulating leukocyte-platelet aggregates is observed. Leukocyte-platelet aggregates play an essential role in linking the hemostatic and immune systems. High shear stress and pro-coagulant and pro-inflammatory stimulants are known to activate platelets and promote the formation of aggregates. Pulsatile blood flow under low shear stress can also induce platelet activation in comparatively mild conditions. However, the effect of such events on leukocyte-platelet aggregates has not yet been investigated. To determine whether low shear stress affects the formation of aggregates, we established a simple “inverting rotation” method of inducing periodic changes in the direction of blood flow in combination with low shear stress. We demonstrated that after the inverting rotation treatment for 10–20 min more than 70% of monocytes selectively aggregated with platelets. The formation of monocyte-platelet complexes was inhibited by an anti-CD162 (PSGL-1) monoclonal antibody or a Ca<sup>2+</sup> chelator. The phagocytic activity of monocytes was augmented by inverting rotation, whereas phagocytosis mediated by granulocytes remained unaffected. Interestingly, the formation of monocyte-platelet complexes suppressed the production of pro-inflammatory cytokines such as interleukin (IL)-1β. At the same time, monocyte-platelet complexes augmented the expression of the anti-inflammatory cytokine IL-10. Our results suggest that platelet-bound monocytes show an anti-inflammatory phenotype under low shear stress conditions. Thus, our method provided new insights into the mechanisms of monocyte-platelet aggregate formation and regulation.
DOI: 10.6084/m9.figshare.3168178.v1
title: Loughborough University APCs 2015

description: This spreadsheet contains details of article processing charges (APCs) paid by Loughborough University during 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.3168163
title: Queen Mary University of London APCs 2015

description: This spreadsheet contains details of article processing charges (APCs) paid by Queen Mary University of London during 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.3168166
title: Royal Holloway APCs 2015

description: This spreadsheet contains details of article processing charges (APCs) paid by Royal Holloway, University of London during 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.3168160
title: Data from: A general procedure for selecting a class of fully symmetric space-time covariance functions

description: Sometimes, space-time covariance models can be derived as solutions of partial differential equations, for phenomena which can be described by physical laws. When the complexity of natural processes does not allow such a description, it would be useful to have a guide for selecting an appropriate class of space-time covariance models for a given data set, among the classes constructed in the last years. Thus, the main aim of this paper is to provide a general procedure for space-time modeling, where the first step to be made is not the choice of a particular covariance model, but the choice of the class of covariance functions suitable for the variable under study. Hence, starting from a space-time data set, an adequate class of models will be properly chosen by considering the main characteristics, such as full symmetry, separability,behavior at the origin, anisotropy aspects, as well as type of non separability and asymptotic behavior. In the literature, these aspects have never been considered in a unified way, nevertheless they can be relevant for selecting a suitable class of covariance models. The proposed procedure has been applied to both a simulated data set and an environmental case study.
DOI: 10.6084/m9.figshare.3168166.v1
title: Royal Holloway APCs 2015

description: This spreadsheet contains details of article processing charges (APCs) paid by Royal Holloway, University of London during 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.3168160.v1
title: Data from: A general procedure for selecting a class of fully symmetric space-time covariance functions

description: Sometimes, space-time covariance models can be derived as solutions of partial differential equations, for phenomena which can be described by physical laws. When the complexity of natural processes does not allow such a description, it would be useful to have a guide for selecting an appropriate class of space-time covariance models for a given data set, among the classes constructed in the last years. Thus, the main aim of this paper is to provide a general procedure for space-time modeling, where the first step to be made is not the choice of a particular covariance model, but the choice of the class of covariance functions suitable for the variable under study. Hence, starting from a space-time data set, an adequate class of models will be properly chosen by considering the main characteristics, such as full symmetry, separability,behavior at the origin, anisotropy aspects, as well as type of non separability and asymptotic behavior. In the literature, these aspects have never been considered in a unified way, nevertheless they can be relevant for selecting a suitable class of covariance models. The proposed procedure has been applied to both a simulated data set and an environmental case study.
DOI: 10.6084/m9.figshare.3168145
title: Supplemental material for the paper 'Striatal Morphology Correlates with Electrophysiological Motor Processing in Huntington’s Disease: An Image-HD Study

description: This dataset provides individual EEG time series data for electrodes Fz, Cz and Pz for all participants in the paper: "Striatal Morphology Correlates with Electrophysiological Motor Processing in Huntington’s Disease: An Image-HD Study"<b>,</b> to be published in "Brain & Behavior".It also provides data for subjects included in our previous study<b>: </b>Turner, L. M., Croft, R. J., Churchyard, A., Looi, J. C. L., Apthorp, D., & Georgiou-Karistianis, N. (2014). Abnormal Electrophysiological Motor Responses in Huntington's Disease: Evidence of Premanifest Compensation. <i>PLoS ONE</i>, <i>10</i>(9), e0138563–e0138563, . We provide MATLAB code for generating figures from the data for the combined sample, using either the full sample from the PLoS paper or the subset used in the second paper. <b> </b>
DOI: 10.6084/m9.figshare.3168151
title: Fabrication of disordered porous structures by solvent-assisted reorganisation of liquid crystal materials

description: Shaping of self-assembled soft materials is of interest for material science and nanotechnology applications because it can provide a flexible and easy method to obtain a single domain in a large area, which is used in opto-electronic and patterning applications. Here, we fabricated disordered porous structures of liquid crystals (LCs) by using a solvent-assisted treatment. Initially, the LC-based layered structures had either toric focal conic domains (TFCDs) or planar aligned samples. After treatment, disordered porous structures with randomly oriented layers were obtained although both initial and final states exhibited short-range ordering of the LC molecules. This behaviour was precisely analysed by polarised optical microscopy (POM), field-emission scanning electron microscopy (FESEM) and grazing incidence X-ray diffraction (GIXD) methods. Our resultant platform showed that disordered porous structures formed by LC materials can be used for tuneable and reversible multiple scattering applications.