cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34703/gzx1-9v95/1wwuem
title: Areal Statistics of Urban Tree Canopy for the Miami-Dade Urban Area 2020

description: The zip file contains an ESRI file geodatabase with five polygon feature classes which subdivide the urban development area of Miami-Dade County into different areal units, which are: parcels, block groups, census places, municipalities, and commission districts. Each feature class contains four tree canopy related fields which describe following statistics for polygons areas: 1) percentage of existing urban tree canopy 2) percentage of possible urban tree canopy on pervious surfaces (grass, bare ground) 3) percentage of possible urban tree canopy on impervious surfaces (e.g., paved parking lots, but not buildings, streets, or railroads) 4) percentage of area unsuitable for tree canopy (building, streets and railroads, water, wetland, cropland). These percentages were derived from a 2020 land cover map for the urban development area of Miami-Dade County available athttps://doi.org/10.34703/gzx1-9v95/HK3EJK . The zip file contains also an ArcGIS Pro 2.8.3 project file (.aprx) which renders these five feature classes as layers with appropriate map symbology.
DOI: 10.6084/m9.figshare.16802326
title: Metadata record for: Bias-corrected CMIP6 global dataset for dynamical downscaling of the historical and future climate (1979–2100)

description: This dataset contains key characteristics about the data described in the Data Descriptor Bias-corrected CMIP6 global dataset for dynamical downscaling of the historical and future climate (1979–2100). <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.16802326.v1
title: Metadata record for: Bias-corrected CMIP6 global dataset for dynamical downscaling of the historical and future climate (1979–2100)

description: This dataset contains key characteristics about the data described in the Data Descriptor Bias-corrected CMIP6 global dataset for dynamical downscaling of the historical and future climate (1979–2100). <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.5281/zenodo.5636226
title: Timema genome sequences and annotations. Version 8.

description: Genome sequence (fasta) files and annotation (gff) files for ten <em>Timema </em>species: <em>T. bartmani, T. cristinae, T. poppensis, T. californicum, T. podura, T. tahoe, T. monikensis, T. douglasi, T. shepardi, and T. genevievae.</em><br> <br> Species are abbreviated as follows: Tbi = <em>T. bartmani</em>, Tce = <em>T. cristinae</em>, Tps = <em>T. poppensis</em>, Tcm = <em>T. californicum</em>, Tpa = <em>T. podura</em>, Tte = <em>T. tahoe</em>, Tms = <em>T. monikensis</em>, Tdi = <em>T. douglasi</em>, Tsi = <em>T. shepardi</em>, and Tge = <em>T. genevievae</em><br> For details of assembly and annotation see: <br> <br> Jaron, K. S*., Parker, D. J*., Anselmetti, Y., Tran Van, P. T., Bast, J., Dumas, Z., Figuet, E., François, C. M., Hayward, K., Rossier, V., Simion, P., Robinson-Rechavi, M., Galtier, N., Schwander, T. 2021. Convergent consequences of parthenogenesis on stick insect genomes. bioRxiv. doi: https://doi.org/10.1101/2020.11.20.391540 <strong>File list:</strong><br> <br> Tbi_b3v08.fasta = T. bartmani genome sequence file<br> Tbi_b3v08.max_arth_b2g_droso_b2g.gff = T. bartmani genome annotation file<br> Tce_b3v08.fasta = T. cristinae genome sequence file<br> Tce_b3v08.max_arth_b2g_droso_b2g.gff = T. cristinae genome annotation file<br> Tcm_b3v08.fasta = T. bartmani genome sequence file<br> Tcm_b3v08.max_arth_b2g_droso_b2g.gff = T. californicum genome annotation file<br> Tdi_b3v08.fasta = T. douglasi genome sequence file<br> Tdi_b3v08.max_arth_b2g_droso_b2g.gff = T. douglasi genome annotation file<br> Tge_b3v08.fasta = T. genevievae genome sequence file<br> Tge_b3v08.max_arth_b2g_droso_b2g.gff = T. genevievae genome annotation file<br> Tms_b3v08.fasta = T. monikensis genome sequence file<br> Tms_b3v08.max_arth_b2g_droso_b2g.gff = T. monikensis genome annotation file<br> Tpa_b3v08.fasta = T. podura genome sequence file<br> Tpa_b3v08.max_arth_b2g_droso_b2g.gff = T. podura genome annotation file<br> Tps_b3v08.fasta = T. poppensis genome sequence file<br> Tps_b3v08.max_arth_b2g_droso_b2g.gff = T. poppensis genome annotation file<br> Tsi_b3v08.fasta = T. shepardi genome sequence file<br> Tsi_b3v08.max_arth_b2g_droso_b2g.gff = T. shepardi genome annotation file<br> Tte_b3v08.fasta = T. tahoe genome sequence file<br> Tte_b3v08.max_arth_b2g_droso_b2g.gff = T. tahoe genome annotation file
description: {"references": ["Jaron, K. S., Parker, D. J., Anselmetti, Y., Tran Van, P. T., Bast, J., Dumas, \u00a0Z., Figuet, E., Fran\u00e7ois, C. M., Hayward, K., Rossier, V., Simion, P., Robinson-Rechavi, \u00a0M., Galtier, N., Schwander, T. 2021. Convergent consequences of parthenogenesis on stick insect genomes. bioRxiv. doi: https://doi.org/10.1101/2020.11.20.391540"]}
DOI: 10.5281/zenodo.5636225
title: Timema genome sequences and annotations. Version 8.

description: Genome sequence (fasta) files and annotation (gff) files for ten <em>Timema </em>species: <em>T. bartmani, T. cristinae, T. poppensis, T. californicum, T. podura, T. tahoe, T. monikensis, T. douglasi, T. shepardi, and T. genevievae.</em><br> <br> Species are abbreviated as follows: Tbi = <em>T. bartmani</em>, Tce = <em>T. cristinae</em>, Tps = <em>T. poppensis</em>, Tcm = <em>T. californicum</em>, Tpa = <em>T. podura</em>, Tte = <em>T. tahoe</em>, Tms = <em>T. monikensis</em>, Tdi = <em>T. douglasi</em>, Tsi = <em>T. shepardi</em>, and Tge = <em>T. genevievae</em><br> For details of assembly and annotation see: <br> <br> Jaron, K. S*., Parker, D. J*., Anselmetti, Y., Tran Van, P. T., Bast, J., Dumas, Z., Figuet, E., François, C. M., Hayward, K., Rossier, V., Simion, P., Robinson-Rechavi, M., Galtier, N., Schwander, T. 2021. Convergent consequences of parthenogenesis on stick insect genomes. bioRxiv. doi: https://doi.org/10.1101/2020.11.20.391540 <strong>File list:</strong><br> <br> Tbi_b3v08.fasta = T. bartmani genome sequence file<br> Tbi_b3v08.max_arth_b2g_droso_b2g.gff = T. bartmani genome annotation file<br> Tce_b3v08.fasta = T. cristinae genome sequence file<br> Tce_b3v08.max_arth_b2g_droso_b2g.gff = T. cristinae genome annotation file<br> Tcm_b3v08.fasta = T. bartmani genome sequence file<br> Tcm_b3v08.max_arth_b2g_droso_b2g.gff = T. californicum genome annotation file<br> Tdi_b3v08.fasta = T. douglasi genome sequence file<br> Tdi_b3v08.max_arth_b2g_droso_b2g.gff = T. douglasi genome annotation file<br> Tge_b3v08.fasta = T. genevievae genome sequence file<br> Tge_b3v08.max_arth_b2g_droso_b2g.gff = T. genevievae genome annotation file<br> Tms_b3v08.fasta = T. monikensis genome sequence file<br> Tms_b3v08.max_arth_b2g_droso_b2g.gff = T. monikensis genome annotation file<br> Tpa_b3v08.fasta = T. podura genome sequence file<br> Tpa_b3v08.max_arth_b2g_droso_b2g.gff = T. podura genome annotation file<br> Tps_b3v08.fasta = T. poppensis genome sequence file<br> Tps_b3v08.max_arth_b2g_droso_b2g.gff = T. poppensis genome annotation file<br> Tsi_b3v08.fasta = T. shepardi genome sequence file<br> Tsi_b3v08.max_arth_b2g_droso_b2g.gff = T. shepardi genome annotation file<br> Tte_b3v08.fasta = T. tahoe genome sequence file<br> Tte_b3v08.max_arth_b2g_droso_b2g.gff = T. tahoe genome annotation file
description: {"references": ["Jaron, K. S., Parker, D. J., Anselmetti, Y., Tran Van, P. T., Bast, J., Dumas, \u00a0Z., Figuet, E., Fran\u00e7ois, C. M., Hayward, K., Rossier, V., Simion, P., Robinson-Rechavi, \u00a0M., Galtier, N., Schwander, T. 2021. Convergent consequences of parthenogenesis on stick insect genomes. bioRxiv. doi: https://doi.org/10.1101/2020.11.20.391540"]}
DOI: 10.6084/m9.figshare.16913386
title: Supplementary material for Sharma et al. (2021) - Diversity

description: This zipped directory contains two folders ("MatrixA" and "MatrixB"), corresponding to datasets Matrix A and Matrix B, respectively, of ref. [42].<br>Within each directory, a folder exists for each of the artificial topologies created using Matrix A or Matrix B of ref. [42]. Names of folders correspond to topological constraints trialed. Files included in each subfolder are the constraint trees and the submatrices created for every topological constraint.<br>
DOI: 10.5281/zenodo.5620990
title: Scan4CFU: Low-cost, open-source bacterial colony tracking over large areas and extended incubation times

description: A hallmark of bacterial populations cultured <em>in vitro</em> is their homogeneity of growth, where the majority of cells display identical growth rate, cell size and content. Recent insights, however, have revealed that even cells growing in exponential growth phase can be heterogeneous with respect to variables typically used to measure cell growth. Bacterial heterogeneity has important implications for how bacteria respond to environmental stresses, such as antibiotics. The phenomenon of antimicrobial persistence, for example, has been linked to a small subpopulation of cells that have entered into a state of dormancy where antibiotics are no longer effective. While methods have been developed for identifying individual non-growing cells in bacterial cultures, there has been less attention paid to how these cells may influence growth in colonies on a solid surface. In response, we have developed a low-cost, open-source platform to perform automated image capture and image analysis of bacterial colony growth on multiple nutrient agar plates simultaneously. The descriptions of the hardware and software are included, along with details about the temperature-controlled growth chamber, high-resolution scanner, and graphical interface to extract and plot the colony lag time and growth kinetics. Experiments were conducted using a wild type strain of <em>Escherichia coli </em>K12 to demonstrate the feasibility and operation of our setup. By automated tracking of bacterial growth kinetics in colonies, the system holds the potential to reveal new insights into understanding the impact of microbial heterogeneity on antibiotic resistance and persistence.
description: This work was partially supported by the U.S. Defense Threat Reduction Agency (HDTRA1-15-1-0053) and U.S. National Science Foundation (NSF IDBR-1556370).
DOI: 10.5281/zenodo.5636786
title: Datos bibliográficos de publicaciones científicas de las áreas anexas a la ciencia de datos

description: Estos dataset contienen datos bibliográficos de publicaciones científicas de las áreas anexas a la ciencia de datos recabados por medio de web scraping a las páginas Semantic Scholar, Dialnet y Google Scholar.
DOI: 10.5281/zenodo.5598358
title: Datos bibliográficos de publicaciones científicas de las áreas anexas a la ciencia de datos

description: Estos dataset contienen datos bibliográficos de publicaciones científicas de las áreas anexas a la ciencia de datos recabados por medio de web scraping a las páginas Semantic Scholar, Dialnet y Google Scholar.
DOI: 10.6084/m9.figshare.16913302.v1
title: Views of Growth Mindset in a Southwestern School District

description: This survey of teachers about perceptions of interleaving and growth mindset from a southwestern school district was collected in October, 2020.<br>This repository includes the survey data in .csv format, the Qualtrics survey file, and Qualtrics .pdf output of the survey.<br>Note that this is not the full dataset, as half of the participants (32/70) did not consent for their data to be shared for research purposes.
DOI: 10.15468/f42dbq
title: Naja romani (Hoffstetter, 1939) (Serpentes: Elapidae) from the late Miocene of the Northern Caucasus: the last East European large cobra

description: This dataset contains the digitized treatments in Plazi based on the original journal article Syromyatnikova, Elena, Tesakov, Alexey, Titov, Vadim (2021): Naja romani (Hoffstetter, 1939) (Serpentes: Elapidae) from the late Miocene of the Northern Caucasus: the last East European large cobra. Geodiversitas 43 (19): 683-689, DOI: 10.5252/geodiversitas2021v43a19
DOI: 10.17030/uclan.data.00000316
title: Mentor / Mentee Data
DOI: 10.6084/m9.figshare.16913302.v2
title: Views of Growth Mindset in a Southwestern School District

description: This survey of teachers about perceptions of interleaving and growth mindset from a southwestern school district was collected in Fall 2020.<br>This repository includes the survey data in .csv format, the Qualtrics survey file, and Qualtrics .pdf output of the survey.<br>Note that this is not the full dataset, as half of the participants (32/70) did not consent for their data to be shared for research purposes.
DOI: 10.17894/ucph.546c77e7-9899-4e66-b2d0-944fcf54a580
title: Dataset for the manuscript entitled "A Baltic Perspective on the Early to early Late Ordovician δ13C and δ18O Records and its Paleoenvironmental Significance"
DOI: 10.34943/dc08703c-abde-4818-9cbd-ce92501defee
title: Juan de Fuca Strait Acoustic Receiver Deployed 2019-10-18

description: The Vemco VR2W Single-Channel Acoustic Receiver 128544 was deployed on 2019-10-18 at Juan de Fuca Strait. Juan de Fuca Strait is a large body of water that connects the Salish Sea to the Pacific Ocean. This device is a Acoustic Receiver. Acoustic receivers detect and decode transmissions from acoustic tags. Receivers are categorized as passive or active which define how the receivers are used. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/3be6ba54-5943-4e3d-ba03-0d870c207ebd
title: Juan de Fuca Strait Acoustic Receiver Deployed 2020-04-28

description: The Vemco VR2W Single-Channel Acoustic Receiver 128544 was deployed on 2020-04-28 at Juan de Fuca Strait. Juan de Fuca Strait is a large body of water that connects the Salish Sea to the Pacific Ocean. This device is a Acoustic Receiver. Acoustic receivers detect and decode transmissions from acoustic tags. Receivers are categorized as passive or active which define how the receivers are used. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.3886/e114603v1-100340
title: Replication data for: Of Mice and Academics: Examining the Effect of Openness on Innovation

description: This paper argues that openness, by lowering costs to access existing research, can enhance both early and late stage innovation through greater exploration of novel research directions. We examine a natural experiment in openness: late-1990s NIH agreements that reduced academics' access costs regarding certain genetically engineered mice. Implementing difference-in-differences estimators, we find that increased openness encourages entry by new researchers and exploration of more diverse research paths, and does not reduce the creation of new genetically engineered mice. Our findings highlight a neglected cost of strong intellectual property restrictions: lower levels of exploration leading to reduced diversity of research output. (JEL I23, O31, O33, O34)
DOI: 10.5286/isis.e.rb2190135-1
title: Ethylene adsorption on Raney cobalt
DOI: 10.5517/ccdc.csd.cc20rctz
title: CCDC 1869511: Experimental Crystal Structure Determination

description: Related Article: Pengchong Xue, Chunyu Zhang, Kunpeng Wang, Meng Liang, Tong Zhang|2018|Dyes Pigm.|163|516|doi:10.1016/j.dyepig.2018.12.036
DOI: 10.5517/ccdc.csd.cc2762tc
title: CCDC 2061432: Experimental Crystal Structure Determination

description: Related Article: Hyelim Cho, Qiong Shen, Lydia H. Zhang, Mikiko Okumura, Akinori Kawakami, Jessi Ambrose, Frederic Sigoillot, Howard R. Miller, Scott Gleim, Amanda Cobos-Correa, Ying Wang, Philippe Piechon, Guglielmo Roma, Fabian Eggimann, Charles Moore, Jr. Peter Aspesi, Felipa A. Mapa, Heather Burks, Nathan T. Ross, Philipp Krastel, Marc Hild, Thomas J. Maimone, David E. Fisher, Daniel K. Nomura, John A. Tallarico, Stephen M. Canham, Jeremy L. Jenkins, William C. Forrester|2021|Cell Chem.iol.|28|1407|doi:10.1016/j.chembiol.2021.03.004
DOI: 10.25345/c5gc45
title: MassIVE MSV000088298 - The landscape of the SARS-CoV-2 HLA-peptidome
title: The human leukocyte antigen (HLA)-bound-viral antigens, serve as an immunological signature that can be selectively recognized by T cells. As viruses evolve by acquiring mutations, it is essential to identify a range of viral presented antigens. Utilizing HLA-peptidomics we Identified SARS-CoV-2-derived peptides presented by highly prevalent HLA Class-I (HLA-I) molecules using infected cells as well as overexpression of SARS-CoV-2 genes. We found 26 HLA-I peptides and 36 HLA class-II (HLA-II) peptides, which are estimated to be presented by at least one HLA allele in 99% of the world population. Among the identified peptides were recurrently presented HLA-I peptides, peptides derived from out-of-frame-ORFs and presentation-hotspots. Seven of these peptides were previously shown to be immunogenic, and we identified two novel immuno-reactive peptides using HLA-multimer staining. These results may aid the development of the next generation of SARS-CoV-2 vaccines based on viral-specific-presented antigens that span several of the viral genes.
DOI: 10.6084/m9.figshare.16913524.v1
title: Soils with Pesticides 16S reads

description: Raw 16S sequence reads for 46 soils samples treated with different pesticides
DOI: 10.6084/m9.figshare.16913524
title: Soils with Pesticides 16S reads

description: Raw 16S sequence reads for 46 soils samples treated with different pesticides
DOI: 10.15468/wufspw
title: Osteological revision of the holotype of the Middle Jurassic sauropod dinosaur Patagosaurus fariasi Bonaparte, 1979 (Sauropoda: Cetiosauridae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Holwerda, Femke M., Rauhut, Oliver W. M., Pol, Diego (2021): Osteological revision of the holotype of the Middle Jurassic sauropod dinosaur Patagosaurus fariasi Bonaparte, 1979 (Sauropoda: Cetiosauridae). Geodiversitas 43 (16): 575-643, DOI: 10.5252/geodiversitas2021v43a16
DOI: 10.5281/zenodo.5636837
title: Lobelia cardinalis decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5636836
title: Lobelia cardinalis decontaminated FSCR

description: .
DOI: 10.25345/c5bp0h
title: MassIVE Reanalysis RMSV000000350.1 - Differential analysis of phosphorylated peptides
title: Raw data were processed using MaxQaunt and Mascot Server (Matrix Science, London). Data preprocessing, multiple fractions combination, data normalization with reference channel, protein summarization, and statistical testing using MSstatsTMT v1.6.1 were performed. MSstatsTMT used as input the evidence report generated by MaxQuant and created quantification reports and a statistical hypothesis testing report. R scripts are available in the methods folder.
DOI: 10.5281/zenodo.5636853
title: Do Design-Rules have an Impact on the Understandability of RESTful APIs? A Controlled Experiment

description: This publication contains the artifacts to reproduce a study, that investigated the impact of design-rules on the understandability of REST APIs. For this study the tool limesurvey (https://www.limesurvey.org/) was used. The following files are provided: <strong>limesurvey_study_archive_final.zip: </strong>This archive contains the survey structure (.Iss file), which can be imported in limesurvey <strong>API_Following_Rules.yaml:</strong> The API description for the version that follows the rules <strong>API_Ignoring_Rules.yaml:</strong> The API description for the version that ignores the rules <strong>Result_Data.csv:</strong> The untouched dataset exported from limesurvey <strong>Adjustments_to_Result_Data.txt:</strong> A description of changes that were made to the result data in order to filter out invalid answers and make the data easier to analyze <strong>Result_Data_Adjusted.csv:</strong> The adjusted dataset based on the changes described in the above file <strong>experiment_analysis_final.R</strong>: The analysis script used to get the results of the study. This script only works with the Result_Data_Adjusted.csv, because it was created based on the adjusted dataset
DOI: 10.5281/zenodo.5636852
title: Do Design-Rules have an Impact on the Understandability of RESTful APIs? A Controlled Experiment

description: This publication contains the artifacts to reproduce a study, that investigated the impact of design-rules on the understandability of REST APIs. For this study the tool limesurvey (https://www.limesurvey.org/) was used. The following files are provided: <strong>limesurvey_study_archive_final.zip: </strong>This archive contains the survey structure (.Iss file), which can be imported in limesurvey <strong>API_Following_Rules.yaml:</strong> The API description for the version that follows the rules <strong>API_Ignoring_Rules.yaml:</strong> The API description for the version that ignores the rules <strong>Result_Data.csv:</strong> The untouched dataset exported from limesurvey <strong>Adjustments_to_Result_Data.txt:</strong> A description of changes that were made to the result data in order to filter out invalid answers and make the data easier to analyze <strong>Result_Data_Adjusted.csv:</strong> The adjusted dataset based on the changes described in the above file <strong>experiment_analysis_final.R</strong>: The analysis script used to get the results of the study. This script only works with the Result_Data_Adjusted.csv, because it was created based on the adjusted dataset
DOI: 10.15468/5ugxrx
title: Field inventory reveals high diversity of new species of mountain catfishes, genus Cambeva Katz, Barbosa, Mattos & Costa, 2018 (Siluriformes: Trichomycteridae), in south-eastern Serra Geral, southern Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Costa, Wilson J. E. M., Feltrin, Caio R. M., Katz, Axel M. (2021): Field inventory reveals high diversity of new species of mountain catfishes, genus Cambeva Katz, Barbosa, Mattos & Costa, 2018 (Siluriformes: Trichomycteridae), in south-eastern Serra Geral, southern Brazil. Zoosystema 43 (28): 659-690, DOI: 10.5252/zoosystema2021v43a28
DOI: 10.25345/c56v9d
title: MassIVE Reanalysis RMSV000000351.1 - Differential analysis of global proteins using MaxQuant and MSstatsTMT
title: Raw data were processed using MaxQaunt and Mascot Server (Matrix Science, London). Data preprocessing, multiple fractions combination, data normalization with reference channel, site-level summarization, and statistical testing using MSstatsTMT v1.6.1 were performed. MSstatsTMT used as input the evidence report generated by MaxQuant and created quantification reports and a statistical hypothesis testing report. R scripts are available in the methods folder.
DOI: 10.6084/m9.figshare.16863532
title: IJEM article supplement of SPSS data file

description: Note. This spss data file (merged_complete final data.sav), is provided for the sake of research transparency and reproducibility as addendum to the following peer-reviewed journal article:Lee, J. & Jaeger, J. (forthcoming). Synthetic Longitudinal Education Database: Linking National Datasets for K-16 Education and College Readiness. <i>International Journal of Educational Methodology</i>.
DOI: 10.6084/m9.figshare.16863532.v3
title: IJEM article supplement of SPSS data file

description: Note. This spss data file (merged_complete final data.sav), is provided for the sake of research transparency and reproducibility as addendum to the following peer-reviewed journal article:Lee, J. & Jaeger, J. (forthcoming). A Feasibility Study of Synthetic K-16 Education Longitudinal Database: Linking National Datasets to Assess College Readiness. <i>International Journal of Educational Methodology</i>.
DOI: 10.5517/ccdc.csd.cc28cl8j
title: CCDC 2096507: Experimental Crystal Structure Determination

description: Related Article: Kevin Breitwieser, Peter Chen|2021|CSD Communication|||