cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/m4yf4rzxbn.2
title: Data for: Volatility-of-Volatility Risk in Asset Pricing

description: VOV data. 1) VOV: For each day, we estimate VOV by calculating the realized bipower variance from a series of five-minute model-free implied market variance within the day, using the high-frequency S&P 500 index option data. 2) ΔVOV: The innovations in market volatility-of-volatility (ΔVOV) is computed as the ARMA(1,1) model residual of the market volatility-of-volatility (VOV). To calculate implied volatility, we use the tick-by-tick quote data for the S&P 500 index (SPX) options from CBOE’s Market Data Report (MDR) tapes over the time period from January 1996 to December 2015. Citation: Chen, Te-Feng, Tarun Chordia, San-Lin Chung, and Ji-Chai Lin. 2021. VOV Risk in Asset Pricing. Review of Asset Pricing Studies. (The VOV data is available at https://www.dropbox.com/s/es8sew1zpu9xciu/VOV-data-RAPS.xlsx?dl=0)
DOI: 10.6084/m9.figshare.8233094
title: A Multiple Comparative Study of Putative Endosymbionts in Three Coexisting Apple Snail Species

description: Raw data from paper "A Multiple Comparative Study of Putative Endosymbionts in Three Coexisting Apple Snail Species"<br><br>PeerJ 7:e8125 https://doi.org/10.7717/peerj.8125<br>
DOI: 10.6084/m9.figshare.8233094.v2
title: A Multiple Comparative Study of Putative Endosymbionts in Three Coexisting Apple Snail Species

description: Raw data from paper "A Multiple Comparative Study of Putative Endosymbionts in Three Coexisting Apple Snail Species"<br><br>PeerJ 7:e8125 https://doi.org/10.7717/peerj.8125<br>
DOI: 10.6084/m9.figshare.8233094.v1
title: Yours, mine or ours? Comparison of putative endosymbionts in the digestive gland of three co-existing apple snail species

description: Raw data from paper "Yours, mine or ours? Comparison of putative endosymbionts in the digestive gland of three co-existing apple snail species"
DOI: 10.6084/m9.figshare.14510712
title: Supplementary Material for: Improvements in Communication and Coordination of Care in a Hemophilia Treatment Center

description: <b><i>Introduction:</i></b> In response to the increasing complexity of care for patients with bleeding disorders, we established new clinical teams for our hemophilia treatment center (HTC). <b><i>Aims:</i></b> We undertook a quality improvement project to improve the coordination and communication with our patients by establishing primary assignments of clinical staff to individual patients (primary teams). <b><i>Methods:</i></b> A quality improvement project group was formed that established the goals and assignment of primary teams. Patients were surveyed for their knowledge of their primary teams as well as their ability to schedule and contact their primary providers. As a measure of the effects on clinical staff, a balancing survey was also conducted among providers impacted by the clinical assignment of teams. <b><i>Results:</i></b> Our results demonstrate improvements across both coordination and communication as reported by patients. Additionally, the assignment of primary teams was met with high satisfaction and improvement in coordination and communication as reported by the clinical staff members of the HTC. <b><i>Conclusions:</i></b> Initiation of a quality improvement project and the creation of a primary team system were feasible at a large HTC and resulted in improvements in both patient-reported and staff-reported outcomes of coordination and communication of care.
DOI: 10.6084/m9.figshare.14510712.v1
title: Supplementary Material for: Improvements in Communication and Coordination of Care in a Hemophilia Treatment Center

description: <b><i>Introduction:</i></b> In response to the increasing complexity of care for patients with bleeding disorders, we established new clinical teams for our hemophilia treatment center (HTC). <b><i>Aims:</i></b> We undertook a quality improvement project to improve the coordination and communication with our patients by establishing primary assignments of clinical staff to individual patients (primary teams). <b><i>Methods:</i></b> A quality improvement project group was formed that established the goals and assignment of primary teams. Patients were surveyed for their knowledge of their primary teams as well as their ability to schedule and contact their primary providers. As a measure of the effects on clinical staff, a balancing survey was also conducted among providers impacted by the clinical assignment of teams. <b><i>Results:</i></b> Our results demonstrate improvements across both coordination and communication as reported by patients. Additionally, the assignment of primary teams was met with high satisfaction and improvement in coordination and communication as reported by the clinical staff members of the HTC. <b><i>Conclusions:</i></b> Initiation of a quality improvement project and the creation of a primary team system were feasible at a large HTC and resulted in improvements in both patient-reported and staff-reported outcomes of coordination and communication of care.
DOI: 10.6084/m9.figshare.14510421
title: Supplementary Material for: Increased Premature Cerebral Small Vessel Diseases in Dialysis Patients: A Retrospective Cross-Sectional Study

description: <b><i>Background:</i></b> Growing data indicate a higher prevalence of cerebrovascular diseases in patients with ESRD. Cerebral small-vessel disease (CSVD) is an important risk factor of stroke and dementia. A comprehensive assessment of CSVD in a dialysis population is needed. <b><i>Methods:</i></b> In this retrospective cross-sectional study, we enrolled 179 dialysis patients and 351 controls matched by sex and age with normal serum creatinine. The presence and locations of 3 main features of CSVD in dialysis patients, including lacunes, cerebral microbleeds (CMBs), and white matter hyperintensities (WMHs), were evaluated with brain magnetic resonance imaging and compared with controls. Univariate and multivariate analyses were performed to identify risk factors. <b><i>Results:</i></b> Compared with controls, the prevalence of CSVD was significantly increased in dialysis patients (odds ratio [OR] 2.66, 95% confidence interval [CI] 1.26–5.62). Among them, risks of CMBs and WMHs were increased in dialysis (OR 4.01, 95% CI 1.78–9.42; 3.91, 95% CI 1.67–9.15), except for lacunes. The age of subjects with CSVD detected was significantly younger in the dialysis group (<i>p</i> = 0.002). Unlike controls, basal ganglia were most affected by lacunes and CMBs in dialysis patients. In dialysis patients, multivariate analysis further revealed that aging, smoking, and hyperlipidemia were significantly associated with CSVD, while dialysis modality was not significant. <b><i>Conclusion:</i></b> We demonstrated a higher prevalence and early-onset tendency of CSVD in dialysis patients, especially for CMBs and WMHs. Dialysis patients showed different patterns and associated factors for CSVD.
DOI: 10.6084/m9.figshare.14510421.v1
title: Supplementary Material for: Increased Premature Cerebral Small Vessel Diseases in Dialysis Patients: A Retrospective Cross-Sectional Study

description: <b><i>Background:</i></b> Growing data indicate a higher prevalence of cerebrovascular diseases in patients with ESRD. Cerebral small-vessel disease (CSVD) is an important risk factor of stroke and dementia. A comprehensive assessment of CSVD in a dialysis population is needed. <b><i>Methods:</i></b> In this retrospective cross-sectional study, we enrolled 179 dialysis patients and 351 controls matched by sex and age with normal serum creatinine. The presence and locations of 3 main features of CSVD in dialysis patients, including lacunes, cerebral microbleeds (CMBs), and white matter hyperintensities (WMHs), were evaluated with brain magnetic resonance imaging and compared with controls. Univariate and multivariate analyses were performed to identify risk factors. <b><i>Results:</i></b> Compared with controls, the prevalence of CSVD was significantly increased in dialysis patients (odds ratio [OR] 2.66, 95% confidence interval [CI] 1.26–5.62). Among them, risks of CMBs and WMHs were increased in dialysis (OR 4.01, 95% CI 1.78–9.42; 3.91, 95% CI 1.67–9.15), except for lacunes. The age of subjects with CSVD detected was significantly younger in the dialysis group (<i>p</i> = 0.002). Unlike controls, basal ganglia were most affected by lacunes and CMBs in dialysis patients. In dialysis patients, multivariate analysis further revealed that aging, smoking, and hyperlipidemia were significantly associated with CSVD, while dialysis modality was not significant. <b><i>Conclusion:</i></b> We demonstrated a higher prevalence and early-onset tendency of CSVD in dialysis patients, especially for CMBs and WMHs. Dialysis patients showed different patterns and associated factors for CSVD.
DOI: 10.6084/m9.figshare.14510667
title: Supplementary Material for: A Comparative Study of 23-Gauge and 27-Gauge Vitrectomy for Puckers or Floaters, Including Evaluation of the Effect of Combined Phaco-Vitrectomy Surgery on Postoperative Outcome

description: <b><i>Introduction:</i></b> A single-center, prospective randomized comparison of postoperative recovery between 23-gauge and 27-gauge surgical approaches in vitrectomy was performed. <b><i>Methods:</i></b> A single-center, prospective randomized comparison of postoperative recovery between 23-gauge and 27-gauge surgical approaches to evaluate efficiencies and postoperative outcomes of the two surgical gauges. Eighty patients who were scheduled to undergo pars plana vitrectomy (PPV) for floaters or macular surgery were treated with either 27-gauge or 23-gauge techniques and assessed for efficiency of the procedures as well as a variety of postop indicators of pain and inflammation. <b><i>Results:</i></b> 27-Gauge vitrectomy took 90 s more time compared to 23-gauge surgery. Wound closure was significantly easier in 27-gauge than 23-gauge. Less postoperative eye reddishness was seen in 27-gauge compared to 23-gauge. A trend towards less inflammation was seen in 27-gauge. <b><i>Conclusion:</i></b> Overall, the trial showed that 27-gauge has the better postoperative outcome compared to 23-gauge PPV. Combining vitrectomy with phaco-surgery did not influence the study outcome parameters.
DOI: 10.6084/m9.figshare.14510667.v1
title: Supplementary Material for: A Comparative Study of 23-Gauge and 27-Gauge Vitrectomy for Puckers or Floaters, Including Evaluation of the Effect of Combined Phaco-Vitrectomy Surgery on Postoperative Outcome

description: <b><i>Introduction:</i></b> A single-center, prospective randomized comparison of postoperative recovery between 23-gauge and 27-gauge surgical approaches in vitrectomy was performed. <b><i>Methods:</i></b> A single-center, prospective randomized comparison of postoperative recovery between 23-gauge and 27-gauge surgical approaches to evaluate efficiencies and postoperative outcomes of the two surgical gauges. Eighty patients who were scheduled to undergo pars plana vitrectomy (PPV) for floaters or macular surgery were treated with either 27-gauge or 23-gauge techniques and assessed for efficiency of the procedures as well as a variety of postop indicators of pain and inflammation. <b><i>Results:</i></b> 27-Gauge vitrectomy took 90 s more time compared to 23-gauge surgery. Wound closure was significantly easier in 27-gauge than 23-gauge. Less postoperative eye reddishness was seen in 27-gauge compared to 23-gauge. A trend towards less inflammation was seen in 27-gauge. <b><i>Conclusion:</i></b> Overall, the trial showed that 27-gauge has the better postoperative outcome compared to 23-gauge PPV. Combining vitrectomy with phaco-surgery did not influence the study outcome parameters.
DOI: 10.5281/zenodo.4726714
title: Linking diseases and phenotypes for clinical usage

description: Background: In recent years a large volume of clinical genomics data has become available due to rapid advances in sequencing<br> technologies. Efficient exploitation of genomics data requires linkage to patient phenotype profiles. Current resources,<br> providing disease-phenotype associations, are not comprehensive, and they often do not cover all of the disease terminologies, particularly ICD-10, which is still the primary terminology used in clinical settings. Methods:<br> We used a text-mining method that utilizes semantic relations in phenotype ontologies, and applied statistical methods to extract associations between diseases in ICD-10 and phenotype ontology classes from the literature. In addition, we present a semi-automatic way to curate ICD-10:phenotype associations from existing resources containing known associations. Results:<br> We created two datasets linking diseases to their phenotypes based on each strategy. We extensively validated these datasets based on comparison to gold standard manually created disease--phenotype associations, based on their similarity to disease--phenotype associations found in databases, and based on how well they can be used to recover gene--disease<br> associations using phenotype similarity. We find that our text mining method can produce phenotypes that are useful but often too<br> specific or too general. However, the dataset generated from integrating multiple knowledgebases is more granular
description: This release contains 4 datasets covering disease-phenotype associations. TM.umls_icd-pheno.txt.gz dataset is generated by using text mining. TM.umls_icd-pheno_UKB_subset.txt.gz covers the subset of the common diseases from UK biobank. semiautomatic_ICD-pheno.txt.gz is generated by using a semi-automatic curation process from existing resources. semiautomatic_ICD-pheno_UKB_subset.txt.gz covers the subset of the common diseases from UK Biobank.
DOI: 10.5281/zenodo.4726713
title: Linking diseases and phenotypes for clinical usage

description: Background: In recent years a large volume of clinical genomics data has become available due to rapid advances in sequencing<br> technologies. Efficient exploitation of genomics data requires linkage to patient phenotype profiles. Current resources,<br> providing disease-phenotype associations, are not comprehensive, and they often do not cover all of the disease terminologies, particularly ICD-10, which is still the primary terminology used in clinical settings. Methods:<br> We used a text-mining method that utilizes semantic relations in phenotype ontologies, and applied statistical methods to extract associations between diseases in ICD-10 and phenotype ontology classes from the literature. In addition, we present a semi-automatic way to curate ICD-10:phenotype associations from existing resources containing known associations. Results:<br> We created two datasets linking diseases to their phenotypes based on each strategy. We extensively validated these datasets based on comparison to gold standard manually created disease--phenotype associations, based on their similarity to disease--phenotype associations found in databases, and based on how well they can be used to recover gene--disease<br> associations using phenotype similarity. We find that our text mining method can produce phenotypes that are useful but often too<br> specific or too general. However, the dataset generated from integrating multiple knowledgebases is more granular
description: This release contains 4 datasets covering disease-phenotype associations. TM.umls_icd-pheno.txt.gz dataset is generated by using text mining. TM.umls_icd-pheno_UKB_subset.txt.gz covers the subset of the common diseases from UK biobank. semiautomatic_ICD-pheno.txt.gz is generated by using a semi-automatic curation process from existing resources. semiautomatic_ICD-pheno_UKB_subset.txt.gz covers the subset of the common diseases from UK Biobank.
DOI: 10.5517/ccdc.csd.cc25zscb
title: CCDC 2025582: Experimental Crystal Structure Determination

description: Related Article: Fan Hu, Wenbo Hao, David Mücke, Qingyan Pan, Zhibo Li, Haoyuan Qi, Yingjie Zhao|2021|J.Am.Chem.Soc.|143|5636|doi:10.1021/jacs.1c00907
DOI: 10.5517/ccdc.csd.cc26ggkq
title: CCDC 2039693: Experimental Crystal Structure Determination

description: Related Article: Guoping Li, Xiaohua Zhang, Leighton O. Jones, Joaquin M. Alzola, Subhrangsu Mukherjee, Liang-wen Feng, Weigang Zhu, Charlotte L. Stern, Wei Huang, Junsheng Yu, Vinod K. Sangwan, Dean M. DeLongchamp, Kevin L. Kohlstedt, Michael R. Wasielewski, Mark C. Hersam, George C. Schatz, Antonio Facchetti, Tobin J. Marks|2021|J.Am.Chem.Soc.|143|6123|doi:10.1021/jacs.1c00211
DOI: 10.5517/ccdc.csd.cc26gglr
title: CCDC 2039694: Experimental Crystal Structure Determination

description: Related Article: Guoping Li, Xiaohua Zhang, Leighton O. Jones, Joaquin M. Alzola, Subhrangsu Mukherjee, Liang-wen Feng, Weigang Zhu, Charlotte L. Stern, Wei Huang, Junsheng Yu, Vinod K. Sangwan, Dean M. DeLongchamp, Kevin L. Kohlstedt, Michael R. Wasielewski, Mark C. Hersam, George C. Schatz, Antonio Facchetti, Tobin J. Marks|2021|J.Am.Chem.Soc.|143|6123|doi:10.1021/jacs.1c00211
DOI: 10.5517/ccdc.csd.cc26ggms
title: CCDC 2039695: Experimental Crystal Structure Determination

description: Related Article: Guoping Li, Xiaohua Zhang, Leighton O. Jones, Joaquin M. Alzola, Subhrangsu Mukherjee, Liang-wen Feng, Weigang Zhu, Charlotte L. Stern, Wei Huang, Junsheng Yu, Vinod K. Sangwan, Dean M. DeLongchamp, Kevin L. Kohlstedt, Michael R. Wasielewski, Mark C. Hersam, George C. Schatz, Antonio Facchetti, Tobin J. Marks|2021|J.Am.Chem.Soc.|143|6123|doi:10.1021/jacs.1c00211
DOI: 10.15468/tkmwxe
title: Two new species of the genus Trilacuna (Araneae: Oonopidae) from Jinyun Mountain of Chongqing, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Huang, Ying, Bian, Dong-Ju, Tong, Yan-Feng, Zhang, Zhi-Sheng, Li, Shu-Qiang (2021): Two new species of the genus Trilacuna (Araneae: Oonopidae) from Jinyun Mountain of Chongqing, China. European Journal of Taxonomy 748: 1-14, DOI: https://doi.org/10.5852/ejt.2021.748.1337, URL: http://dx.doi.org/10.5852/ejt.2021.748.1337
DOI: 10.5880/crc1211db.24
title: Frequency analysis of WRF extreme precipitation events 10 km resolution Atacama

description: This file contains the results of a spatio-temporal frequency analysis of extreme precipitation events for the coastal Atacama Desert (20°S-26°S, 69.5°W-71°W). Daily accumulated total precipitation data between 1982 and 2017 from a regional WRF model for the Atacama Desert is used as input data. Mean annual precipitation, the number of events exceeding specific threshold values in precipitation, coefficients of determination for the logarithmic regression analyses, expected precipitation for given recurrence intervals, and expected recurrence intervals for given precipitation events are given as output. The spatial resolution is 10 km and the output is stored in a .csv table.
DOI: 10.5281/zenodo.4724570
title: List of Citizen Science Projects in the Netherlands

description: This dataset contains citizen science projects in the Netherlands. Citizen science is scientific work that citizens completely or partially conduct themselves on a voluntary basis. Professional researchers often provide instructions and guidance, but they are not the main collectors of the data. Alongside project names, the dataset includes supplementary information regarding a description of the project, its organizers, location, duration, data accessibility, and links to the main project information and data if applicable. The CSV and XLSX files provide an up-to-date list of both closed and ongoing citizen science projects in the Netherlands categorized by discipline. Anyone can add or update a citizen science project, alongside its supplementary information, using the main GitHub repository (https://github.com/sodascience/awesome-citizen-science-nl). It is only possible to add projects conducted in the Netherlands and we encourage other countries to create such a list themselves. We provide further descriptions of the supplementary information and their input format in the codebook, which can be found on Github and in this repository. We update the dataset as additional projects are added and approved. This project received support of the SoDa team of ODISSEI (https://odissei-data.nl/en/using-soda/) to make the dataset openly available via Github and publish the data on Zenodo.
DOI: 10.5281/zenodo.4724569
title: List of Citizen Science Projects in the Netherlands

description: This dataset contains citizen science projects in the Netherlands. Citizen science is scientific work that citizens completely or partially conduct themselves on a voluntary basis. Professional researchers often provide instructions and guidance, but they are not the main collectors of the data. Alongside project names, the dataset includes supplementary information regarding a description of the project, its organizers, location, duration, data accessibility, and links to the main project information and data if applicable. The CSV and XLSX files provide an up-to-date list of both closed and ongoing citizen science projects in the Netherlands categorized by discipline. Anyone can add or update a citizen science project, alongside its supplementary information, using the main GitHub repository (https://github.com/sodascience/awesome-citizen-science-nl). It is only possible to add projects conducted in the Netherlands and we encourage other countries to create such a list themselves. We provide further descriptions of the supplementary information and their input format in the codebook, which can be found on Github and in this repository. We update the dataset as additional projects are added and approved. This project received support of the SoDa team of ODISSEI (https://odissei-data.nl/en/using-soda/) to make the dataset openly available via Github and publish the data on Zenodo.
DOI: 10.5257/iea/ept/2021q1
title: Energy Prices and Taxes (2021Q1 Edition)

description: Energy Prices Taxes contains a major international compilation of energy prices of OECD countries: including crude oil and oil product spot prices, import costs by crude stream, industry prices and consumer prices. The end-user prices cover the main petroleum products, gas, coal and electricity. Every issue includes full notes on sources and methods and a description of price mechanisms in each country. Time series availability varies with each data series.
DOI: 10.5281/zenodo.4721071
title: Datasets for Eirew et al Accurate determination of CRISPR-mediated gene fitness in transplantable tumours

description: Datasets for the manuscript Eirew et al Accurate determination of CRISPR-mediated gene fitness in transplantable tumours:<br> - targeted sequencing FASTQ files<br> - sgRNA-UMI count files<br> - sgRNA library content<br> - experiment description
DOI: 10.5281/zenodo.4721070
title: Datasets for Eirew et al Accurate determination of CRISPR-mediated gene fitness in transplantable tumours

description: Datasets for the manuscript Eirew et al Accurate determination of CRISPR-mediated gene fitness in transplantable tumours:<br> - targeted sequencing FASTQ files<br> - sgRNA-UMI count files<br> - sgRNA library content<br> - experiment description