cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/120557
title: Gyrocompass data collected during research cruise SAV-14-30 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120555
title: Meteorological Station data collected during research cruise SAV-14-30 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120554
title: Singlebeam Echosounder data collected during research cruise SAV-14-30 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120558
title: TSG (Thermosalinograph) data collected during research cruise SAV-14-30 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116989
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-14-31 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7276490
title: Analysis of the data from Application of muon tomography to fuel cask monitoring

description: Excel works sheet of the analysis of the data
DOI: 10.7284/121758
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-15-01 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7276490.v1
title: Analysis of the data from Application of muon tomography to fuel cask monitoring

description: Excel works sheet of the analysis of the data
DOI: 10.6084/m9.figshare.7276487
title: Data from Multiscale modelling of the human lumbar facet capsular ligament: analysing spinal motion from the joint to the neurons

description: Due to its high level of innervation, the lumbar facet capsular ligament (FCL) is suspected to play a role in low back pain (LBP). The nociceptors in the lumbar FCL may experience excessive deformation and generate pain signals. As such, understanding the mechanical behaviour of the FCL, as well as that of its underlying nerves, is critical if one hopes to understand its role in LBP. In this work, we constructed a multiscale structure-based finite-element (FE) model of a lumbar FCL on a spinal motion segment undergoing physiological motions of flexion, extension, ipsilateral and contralateral bending, and ipsilateral axial rotation. Our FE model was created for a generic FCL geometry by morphing a previously-imaged FCL anatomy onto an existing generic motion segment model. The fibre organization of the FCL in our models was subject-specific based on previous analysis of six dissected specimens. The fibre structures from those specimens were mapped onto the FCL geometry on the motion segment. A motion segment model was used to determine vertebral kinematics under specified spinal loading conditions, providing boundary conditions for the FCL-only multiscale FE model. The solution of the FE model then provided detailed stress and strain fields within the tissue. Lastly, we used this computed strain field and our previous studies of deformation of nerves embedded in fibrous networks during simple deformations (e.g. uniaxial stretch, shear) to estimate the nerve deformation based on the local tissue strain and fibre alignment. Our results show that extension and ipsilateral bending result in largest strains of the lumbar FCL, while contralateral bending and flexion experience lowest strain values. Similar to strain trends, we calculated that the stretch of the microtubules of the nerves, as well as the forces exerted on the nerves' membrane are maximal for extension and ipsilateral bending, but the location within the FCL of peak microtubule stretch differed from that of peak membrane force.
DOI: 10.7284/121759
title: Gyrocompass data collected during research cruise SAV-15-01 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7276487.v1
title: Data from Multiscale modelling of the human lumbar facet capsular ligament: analysing spinal motion from the joint to the neurons

description: Due to its high level of innervation, the lumbar facet capsular ligament (FCL) is suspected to play a role in low back pain (LBP). The nociceptors in the lumbar FCL may experience excessive deformation and generate pain signals. As such, understanding the mechanical behaviour of the FCL, as well as that of its underlying nerves, is critical if one hopes to understand its role in LBP. In this work, we constructed a multiscale structure-based finite-element (FE) model of a lumbar FCL on a spinal motion segment undergoing physiological motions of flexion, extension, ipsilateral and contralateral bending, and ipsilateral axial rotation. Our FE model was created for a generic FCL geometry by morphing a previously-imaged FCL anatomy onto an existing generic motion segment model. The fibre organization of the FCL in our models was subject-specific based on previous analysis of six dissected specimens. The fibre structures from those specimens were mapped onto the FCL geometry on the motion segment. A motion segment model was used to determine vertebral kinematics under specified spinal loading conditions, providing boundary conditions for the FCL-only multiscale FE model. The solution of the FE model then provided detailed stress and strain fields within the tissue. Lastly, we used this computed strain field and our previous studies of deformation of nerves embedded in fibrous networks during simple deformations (e.g. uniaxial stretch, shear) to estimate the nerve deformation based on the local tissue strain and fibre alignment. Our results show that extension and ipsilateral bending result in largest strains of the lumbar FCL, while contralateral bending and flexion experience lowest strain values. Similar to strain trends, we calculated that the stretch of the microtubules of the nerves, as well as the forces exerted on the nerves' membrane are maximal for extension and ipsilateral bending, but the location within the FCL of peak microtubule stretch differed from that of peak membrane force.
DOI: 10.7284/121757
title: Meteorological Station data collected during research cruise SAV-15-01 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121756
title: Singlebeam Echosounder data collected during research cruise SAV-15-01 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121760
title: TSG (Thermosalinograph) data collected during research cruise SAV-15-01 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121763
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-15-02 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121764
title: GNSS (Global Navigation Satellite System) data collected during research cruise SAV-15-02 using a Furuno GP-90 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121765
title: Gyrocompass data collected during research cruise SAV-15-02 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121762
title: Meteorological Station data collected during research cruise SAV-15-02 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121761
title: Singlebeam Echosounder data collected during research cruise SAV-15-02 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121766
title: TSG (Thermosalinograph) data collected during research cruise SAV-15-02 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121769
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-15-03 using a Sea-Bird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/hfnzb7ct67.4
title: Data on the most common laboratory tests with pathology in the SmartLab Kazakhstan laboratory information system database

description: The data presented in this paper are based on laboratory tests and pathology results that were found to be outside the normal range. The data was collected from several Kazakhstan medical laboratories, including the SmartLab laboratory information system. The raw data includes  7,674,353 results and raw data abnormal includes 1,898,410 results. The ranking of abnormal results was done using the TF-IDF statistical method.
The raw data tests in the Russian language and computed data in English.
DOI: 10.17632/hfnzb7ct67.1
title: Laboratory pathology tests

description: Analysed data of pathology tests quantity
DOI: 10.17632/hfnzb7ct67.2
title: Data on the most common laboratory tests with pathology in the SmartLab Kazakhstan laboratory information system database

description: The data presented in this paper are based on laboratory tests and pathology results that were found to be outside the normal range. The data was collected from several Kazakhstan medical laboratories, including the SmartLab laboratory information system. The raw data includes  7,674,353 results and raw data abnormal includes 1,898,410 results. The ranking of abnormal results was done using the TF-IDF statistical method.
The raw data tests in the Russian language and computed data in English.
DOI: 10.17632/rgd5g4f65s.1
title: 3D force chain ananlysis

description: These are the functions used in the ARMA 2023 paper by Li and Juanes.
DOI: 10.17632/zm35gr45x3.1
title: Common blood test indices for predicting transient abnormal myelopoiesis-related mortality in infants with Down syndrome

description: Information on the prediction of transient abnormal myelopoiesis (TAM)-related mortality at the time of TAM diagnosis is important. Therefore, in this study, we aimed to identify a quantitative index that can be used to predict mortality at the time of diagnosis. In this single-center retrospective review, we analyzed infants with TAM associated with Down syndrome who were admitted to the neonatal intensive care unit in Kanagawa Children’s Medical Center from 1992 to 2021. TAM-related death was defined as death of liver failure or disseminated intravascular coagulation within 6 months of birth. Liver failure was defined as a prothrombin time–international normalized ratio of ≥2.0 under vitamin K administration with biochemical evidence of liver damage according to a report by Squires et al. Intestinal failure-associated liver disease and viral hepatitis were excluded as causes of TAM-related death. The diagnostic criterion for disseminated intravascular coagulation was a score of ≥5 on the International Society on Thrombosis and Haemostasis scoring system. We collected the following data: gestational age, birth weight, sex, Apgar score, congenital heart disease, congenital gastrointestinal disease, tracheal intubation at birth, hydrops, systemic edema, bleeding symptoms, white blood cell count, blast percentage, hemoglobin concentration, platelet count, serum aspartate aminotransferase and alanine aminotransferase concentrations, lactate dehydrogenase concentration, direct bilirubin concentration, albumin concentration, prothrombin time–international normalized ratio, D-dimer concentration at the time of diagnosis, hyaluronic acid concentration, low-dose cytarabine administration, glucocorticoid administration, red blood cell transfusion, fresh frozen plasma transfusion, and platelet transfusion after the diagnosis. In this study, we showed that a serum albumin concentration of <28 g/L at diagnosis was a simple, sensitive, and specific predictor of TAM-related mortality in infants with TAM.
DOI: 10.17632/zm35gr45x3.2
title: Common blood test indices for predicting transient abnormal myelopoiesis-related mortality in infants with Down syndrome

description: Information on the prediction of transient abnormal myelopoiesis (TAM)-related mortality at the time of TAM diagnosis is important. Therefore, in this study, we aimed to identify a quantitative index that can be used to predict mortality at the time of diagnosis. In this single-center retrospective review, we analyzed infants with TAM associated with Down syndrome who were admitted to the neonatal intensive care unit in Kanagawa Children’s Medical Center from 1992 to 2021. TAM-related death was defined as death of liver failure or disseminated intravascular coagulation within 6 months of birth. Liver failure was defined as a prothrombin time–international normalized ratio of ≥2.0 under vitamin K administration with biochemical evidence of liver damage according to a report by Squires et al. Intestinal failure-associated liver disease and viral hepatitis were excluded as causes of TAM-related death. The diagnostic criterion for disseminated intravascular coagulation was a score of ≥5 on the International Society on Thrombosis and Haemostasis scoring system. We collected the following data: gestational age, birth weight, sex, Apgar score, congenital heart disease, congenital gastrointestinal disease, tracheal intubation at birth, hydrops, systemic edema, bleeding symptoms, white blood cell count, blast percentage, hemoglobin concentration, platelet count, serum aspartate aminotransferase and alanine aminotransferase concentrations, lactate dehydrogenase concentration, direct bilirubin concentration, albumin concentration, prothrombin time–international normalized ratio, D-dimer concentration at the time of diagnosis, hyaluronic acid concentration, low-dose cytarabine administration, glucocorticoid administration, red blood cell transfusion, fresh frozen plasma transfusion, and platelet transfusion after the diagnosis. Among an initial total of 462 infants with Down syndrome admitted to our hospital from 1992 to 2021, 51 infants were diagnosed with TAM. Eight infants were excluded, and the remaining 43 infants (12 with TAM-related death and 31 survivors) were included in the analysis. In this study, we showed that a serum albumin concentration of <28 g/L at diagnosis was a simple, sensitive, and specific predictor of TAM-related mortality in infants with TAM.
DOI: 10.17632/zcgzdytbm4.1
title: Decernotinib induced tolerogenic dendritic cells alleviates experimental autoimmune neuritis

description: As a potent JAK inhibitor, VX-509 inhibits the maturation of dendritic cells and induces their transformation into tolerant dendritic cells. The adoptive transfer of VX-509 induced tolerogenic dendritic cells can reduce the severity of experimental autoimmune neuritis in mice and ameliorate the inflammatory cell infiltration and myelin sheath damage of the sciatic nerve. It can effectively reduce inflammation in the microenvironment of rodents.
DOI: 10.17632/fdpwpc4h82.1
title: Eosinophilic fascitis following Sars-Cov2 Vaccination

description: Table 1. Eosinophilic-associated diseases following vaccination against COVID-19 reported in the literature.
DOI: 10.7910/dvn/qtonrt
title: Replication Data for the fsQCA Model in: "Why Do Companies Employ Prohibited Unethical Artificial Intelligence Practices?"

description: Data set used for the fsQCA model, includes sources, companies and calibrated conditions.
DOI: 10.17632/4pcn2r3s7k.1
title: Influence of weather parameters on Asian weaver ants daily foraging activity in occupied oil palm plantations

description: Study 2 examines the trunk foraging activity pattern of the Asian weaver ant Oecophylla smaragdina major workers in relation to air temperature (AT), relative humidity (RH), air pressure (AP) and rainfall interception (RI) and detects the daily peaks activity patterns.
DOI: 10.17632/jrm7nw6b7b.1
title: Dataset for smartphone mismatch in computer aided diagnosis systems based on speech

description: Voice analysis-based systems offer low-cost, highly available automatic diagnostic aid for Parkinson’s disease (PD) detection anywhere a smartphone with a broadband connection is available. However, reliability depends on factors affecting the communication channel. The data presented here have been obtained to evaluate the effects of the recording device mismatch. 

All the information on data collection and dataset building is presented in the following paper. This paper is encouraged to be cited in case of any scientific research publication is produced using this dataset:

Mario Madruga, Yolanda Campos-Roca, Carlos J. Pérez, Addressing smartphone mismatch in Parkinson’s disease detection aid systems based on speech, Biomedical Signal Processing and Control, Volume 80, Part 1, 2023, 104281, https://doi.org/10.1016/j.bspc.2022.104281 

Data are in .csv and .xlms formats. A brief description of attributes can be found in the .pdf file.

This research is part of R&D&I projects PID2021-122209OB-C32 and MTM2017-86875-C3-2-R, funded by Ministerio de Ciencia e Innovación and Agencia Estatal de Investigación, Spain. It has also been funded by Junta de Extremadura, Spain (Projects GR21057 and GR21072), the European Union (European Regional Development Funds), and grant number FPU18/03274.
DOI: 10.6084/m9.figshare.22269070
title: Supplementary Material for: Waldenström macroglobulinemia and non-IgM-type lymphoplasmacytic lymphoma are genetically similar

description: Introduction Waldenström macroglobulinemia (WM) represents a subset of lymphoplasmacytic lymphoma (LPL) with the immunoglobulin (Ig)M paraprotein. MYD88 L265P and CXCR4 mutations are common mutations in WM patients, and mutations in ARID1A and KMT2D (MLL2) have also been reported. However, little information has been accumulated on genetic changes in LPL with other paraproteins like IgG. Methods We therefore aimed to evaluate genetic differences between WM and LPL with non-IgM paraprotein (non-IgM-type LPL) using targeted next-generation sequencing (NGS) in 20 Japanese patients (10 with WM, 10 with non-IgM-type LPL). Results Mutations were detected in ARID1A (10%), CXCR4 (20%), MYD88 (90%), and KMT2D (0%) for WM patients, and in ARID1A (10%), CXCR4 (20%), MYD88 (70%), and KMT2D (10%) for non-IgM-type LPL patients. No significant differences were identified. No mutations were detected in NOTCH2, PRDM1, CD274 (PD-L1), PDCD1LG2 (PD-L2), RAG2, MYBBP1A, TP53, or CD79B. Discussion Mutant allele frequency in MYD88 L265P did not differ significantly between WM and non-IgM-type LPL. Most mutations detected by NGS were subclonal following MYD88 L265P, although one non-IgM-type LPL patient harbored only CXCR4 S338X mutation. Our NGS analyses reveal genetic characteristics in LPL patients and suggest genetic similarities between these two subsets of LPL, WM and non-IgM-type.
DOI: 10.6084/m9.figshare.22269037
title: TileMapdata.zip

description: Test data at Level 9 to Level 14 from Baidu map, Amap, and Google map
DOI: 10.5281/zenodo.7651300
title: Data on after effects and transgenerational effects of a drought treatment of F. alnus mother plants in a common garden

description: Three datasets are present: - dataset 1 consists of measurements and observations in 2020 and 2021 on mother plants (Frangula alnus) in a common garden that experienced severe drought stress in 2018. - dataset 2 consists of measurements on seeds that were collected in 2020 on the F. alnus mother plants in the common garden - dataset 3 consists of measurements in 2021 on the germination of the seeds that were collected in 2020 on the F. alnus mother plants in the common garden.
DOI: 10.5281/zenodo.7651299
title: Data on after effects and transgenerational effects of a drought treatment of F. alnus mother plants in a common garden

description: Three datasets are present: - dataset 1 consists of measurements and observations in 2020 and 2021 on mother plants (Frangula alnus) in a common garden that experienced severe drought stress in 2018. - dataset 2 consists of measurements on seeds that were collected in 2020 on the F. alnus mother plants in the common garden - dataset 3 consists of measurements in 2021 on the germination of the seeds that were collected in 2020 on the F. alnus mother plants in the common garden.
DOI: 10.17632/5g3khk2nj7.1
title: Wildfire smoke demonstrates significant and predictable black carbon light absorption enhancements

description: Citation: James E. Lee, Kyle Gorkowski, Aaron Meyers, Katherine B. Benedict, Allison C. Aiken, and Manvendra K. Dubey, "Wildfire smoke demonstrates significant and predictable black carbon light absorption enhancements" (in prep). 

Corresponding Author: James E. Lee (jamesedlee@lanl.gov)

Abstract:
Black carbon (BC) is estimated to have the second largest anthropogenic radiative forcing in earth-systems models, but there is significant uncertainty in its impact due to complex mixing with organics. Laboratory-generated particles, uniform in BC size and quantity of coating material, show that co-mixed non-absorbing material enhances absorption by BC by a factor of 2-3.5. However, weak or no enhancements are often reported for field studies which implies a lower radiative impact of BC compared to how many models currently treat aerosols. To investigate real-world effects of BC-coatings, we analyzed twenty-four ambient wildfire smoke plumes that varied in geographic origin, fuel types, burn conditions, atmospheric age and transport. We conducted particle-by-particle analysis of BC mass and coating-thickness, capturing BC and BC-coating heterogeneity and allowing for unique determination of the population-integrated BC absorption. This data-driven approach successfully predicted the observed BC-absorption and absorption enhancements to better than 15% accuracy for smoke plumes transported through the lower troposphere, which stay relatively warm, and in the particle growth phase. We show that independent of fire conditions, fuels, and atmospherically-driven reactions (e.g., oxidation, photochemistry), fire emitted aerosol is well represented as spherical BC cores with concentric coatings. In contrast, estimates of BC absorption using bulk coating properties overestimated absorption by 20-50% due to assumptions of particle uniformity. Although particle-by-particle analysis is computationally prohibitive in some applications, we show that absorption enhancements in these plumes can be reliably estimated by the coating-to-BC volume ratio providing a suitable parameterization to implement in models.

<Last Update 20220312>
v0: Submitted for publication purposes
DOI: 10.17632/wbsg79pyc8.1
title: Data for: Environmental Life Cycle Assessment of Algae Systems: Critical Review of Modelling Approaches

description: Supplementary Document of the article entitled "Environmental Life Cycle Assessment of Algae Systems: Critical Review of Modelling Approaches". Database containing the information extracted from 158 LCA studies of algae systems published between 2010 and 2022.
DOI: 10.17632/nr4ssx645r.1
title: A multiplexed in vivo approach to identify driver genes in small cell lung cancer

description: Source data for the manuscript titled, "A multiplexed in vivo approach to identify driver genes in small cell lung cancer."