cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2gnzmr
title: CCDC 2284285: Experimental Crystal Structure Determination

description: Related Article: Mathias T. Nielsen, Dmytro Mihrin, Mike S.B. Jørgensen, Xiaomei Yan, Rolf W. Berg, Xinxin Xiao, René Wugt Larsen, Martin Nielsen|2025|Polyhedron|267|117310|doi:10.1016/j.poly.2024.117310
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hm78n
title: CCDC 2312391: Experimental Crystal Structure Determination

description: Related Article: Hemant K. Singh, Agnieszka Bodzioch, Anna Pietrzak, Piotr Kaszyński|2025|Chem.Commun.|61|496|doi:10.1039/D4CC05704J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j5rt9
title: CCDC 2329241: Experimental Crystal Structure Determination

description: Related Article: Tamara M. Mladenović, Vesna M. Matejić, Slađana B. Novaković, Goran A. Bogdanović, Dejan A. Milenković, Edina H. Avdović, Marko R. Antonijević, Zoran S. Marković, Dušica M. Simijonović|2025|J.Mol.Struct.|1325|140939|doi:10.1016/j.molstruc.2024.140939
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k6352
title: CCDC 2359353: Experimental Crystal Structure Determination

description: Related Article: Hadi Hachem, Yann Le Gal, Olivier Jeannin, Dominique Lorcy, Gonzalo Scalese, Leticia Pérez-Díaz, Dinorah Gambino, António P. Matos, Fernanda Marques|2025|J.Inorg.Biochem.|264|112788|doi:10.1016/j.jinorgbio.2024.112788
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/4hf9n88733.1
title: Chemometric Analysis to Support Untargeted Lipidomics for Characterization of Irradiated and Not Irradiated Camembert Cheese

description: An investigation using UHPLC-Q-Orbitrap-MS and multivariate statistics was conducted to obtain lipid fingerprint of Camembert cheese and to explore its correlated variation with respect to X-ray irradiation treatment.
DOI: 10.17632/g2jg3whfxr.1
title: LINF_240024200

description: dehydrogenase-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.657rkj
title: Occurrence Download

description: A dataset containing 129842 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pungitius pungitius (Linnaeus, 1758)"
 ]
}

 The dataset includes 129842 records from 335 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000094-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/kdyg4yzb48.1
title: LINF_240024800

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/tw58cv5ccy.1
title: Spatial-temporal variations in pollen load

description: Tao Zhang and Qiang Fang, Consistent spatial-temporal variations in stigmatic pollen load support tolerance-avoidance strategy to heterospecific pollen deposition. 
Supp.1-raw data.xlsx, raw data of pollen deposition of the 19 co-flowering species in the six communities across four years.
data.xlsx, raw data for a linear mixed model, Table 2 and S3.
data2.xlsx, raw data for the hierarchical cluster analysis of 19 plant species in six communities for heterospecific pollen (HP) proportion of each year, Fig 3.
data3.xlsx, raw data fot the relationship between the coefficient of variation (CV) of the proportion heterospecific pollen (HP) and the mean proportion across six communities and four years, Fig 6.
R-code.txt for the specific code.
DOI: 10.17632/2hkjxdczzs.1
title: Phase 3- Association of OXIS contacts and proximal caries - Prospective study

description: Purpose: This study aimed to evaluate the association between contact areas of primary molar teeth and approximal caries after three years of observation. 
Methods: This prospective cohort study included 1119 caries-free children, aged 3–4 years, from Puducherry, India. At baseline, 4476 contacts were assessed using OXIS criteria, which denotes O (open contact); X (point contact); I (straight contact) and S (curved contact). Two calibrated dentists measured dental caries at one-year intervals for three years. Poisson regression analysis with a multilevel approach was used to determine the association between contact type and approximal caries.
Results: Of 3,848 contacts observed at the end of three years, 499 (13·0%) were carious. The adjusted analysis revealed a significant association between contact type and approximal caries (p &lt; 0·05). The risk ratios were 2.3 for X-type contacts (0·5–11·4, p = 0.307); 12.7 for I-type (4·1–39·6, p &lt; 0·05); and 22.5 for S-type (7.2–70.6, p &lt; 0.05), when compared with O-type. 
Conclusion: Compelling evidence suggests that variations in contact type are significant in development of approximal caries. The S-type contact is the most susceptible to approximal caries, followed by the I type.
DOI: 10.17632/kk69kthx33.1
title: LINF_140019000

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/7vg8d8xvcm.1
title: Species bathymetric ranges in the deep North Pacific (north of 30 N, depths &gt; 4000 m): Echinodermata, Bivalvia

description: The dataset includes total bathymetric ranges for the deep-sea (occurring at &gt;4000m) North Pacific species in the World ocean as well as the ranges in the North Pacific (north of 30N) and in the northwest Pacific (north of 30N, west of 180E).

Датасет включает сведения о вертикальном распространении абиссальных и ультраабиссальных видов иглокожих и двустворчатых моллюсков, обитающих в северной Пацифике на глубинах свыше 4000 м. Датасет включает 1) общие вертикальные диапазоны в Мировом океане 2) вертикальные диапазоны в Северо-Западной Пацифике 3) вертикальные диапазоны в Северной Пацифике.
Работа поддержана грантом РНФ № 24-17-00321.
DOI: 10.17632/j3gtd69d6y.1
title: LINF_150005600

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/w5fxj9v3zx.1
title: LINF_150012600

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/p3fwkycgcd
title: GYY4137_VILI_mousemodel

description: Raw data of the paper "A slow releasing sulphide donor GYY4137 protects mice against ventilator-induced lung injury"
DOI: 10.17632/p3fwkycgcd.1
title: GYY4137_VILI_mousemodel

description: Raw data of the paper "A slow releasing sulphide donor GYY4137 protects mice against ventilator-induced lung injury"
DOI: 10.17632/tjrrsm8nmr.1
title: PilbaraCarbonateBudgets

description: Spreadsheet data of carbonate budget calculations for two island reefs of the Pilbara Western Australia
DOI: 10.17632/8w93mxns6x.1
title: Data relevant to the study "Uplift dynamics of the obducted northeastern continental margin of the Arabian Peninsula, Oman"

description: These data are presented in the study "Uplift dynamics of the obducted northeastern continental margin of the Arabian Peninsula, Oman"

The data series here are comprised of a series of thin section photos and handspecimens presented in the manuscript. It also contains handspecimens photos of samples that they are dated by carbon-14 and Optical Stimulated Luminescence. The raw data reports are included. 

Also a real time kinematic topographic survey data are given along with the base station coordinations. The average elevations used in the study are calculated within the excel file. 

Finally, Insar-dem data are also provided, and an info text is supplied within the file
DOI: 10.17632/824yvn82b5.2
title: A dataset on bacterio-, phyto- and zooplankton from an emerging periglacial lagoon in Svalbard, Arctic

description: Data on zooplankton, phytoplankton, and bacterioplankton from Arctic coastal lagoon are provided. The lagoon is located in the region of intense glacier melting, near Eidembukta Bay, on the Western Part of Spitsbergen (Svalbard Archipelago). This newly formed water body represents the new ecosystem, which comprises elements presumably coming into the lagoon from the sea, the nearby tundra ponds and rivers, and the melting glacier. In deeper areas of the lagoon, upper and lower layers of water coming from the melting glacier and from the sea, respectively, form an extremely strong halocline. Apart from vertical gradient, the lagoon is structured horizontally as its areas vary in respect to their proximity to the melting glacier, and hence by their age.

The data presented in the repository provide an actual snapshot of the diversity of aquatic organisms in the novel post-glacial habitat. The data can be used for elucidating the processes of the emerging and evolution of newly formed aquatic ecosystems in the context of the warming era.

The dataset includes the results of the analysis of the samples collected during two summer seasons (August 2022 and August 2023). Sampling was performed at 26 sampling sites, from different depths (above and below strong halocline) and different lagoon parts.

The following types of data are given in four Excel tables:

1. Table_1_Sampling sites.xlsx - map of the lagoon, brief characteristics of sampling sites: date of sampling, geographical coordinates, number and type of samples collected at each site. 
2. Table_2_Zooplankton.xlsx - list of lowest identified taxa of zooplankton, abundances of the taxa in the samples, salinity range for each taxon.
3. Table_3_Phytoplankton.xlsx - list of lowest identified taxa of phytoplankton, abundances of the taxa in the samples, biomass and carbon biomass of the taxa with categorisation by cell size, salinity range for each taxon
4. Table_4_Bacterioplankton.xlsx - bacteria cell concentration and bacteria carbon biomass in the samples

The study was performed in framework of the EIDEMBUKTA project (“Formation of a novel coastal lagoon ecosystem following glacier retreat in Eidembukta, Svalbard Arctic“), funded by the Research Council of Lithuania (agreement number S-MIP-22-48) with logistical and technical support from the Institute of Oceanology of Polish Academy of Sciences.
DOI: 10.15468/dl.3yg26y
title: Occurrence Download

description: A dataset containing 19554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Lithuania, Latvia, Poland, Belarus)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ciconia nigra (Linnaeus, 1758)"
 ]
}

 The dataset includes 19554 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000098-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/n7fjw6hvz2.1
title: Pantoea dispersa PGPR-24 genome sequence

description: This dataset comprises the whole-genome sequencing data of Pantoea dispersa PGPR-24, a plant growth-promoting rhizobacterium isolated from the chrysanthemum rhizosphere.
DOI: 10.17632/khs6xyzzd7.1
title: LINF_250017500

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/jpxg7nbhx7.1
title: LINF_250015100

description: Ankyrin repeat-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/mtkrjg52bt.1
title: LINF_250012600

description: Thioredoxin; Leishmania infantum (strain JPCM5)
DOI: 10.17632/tzbffkpr9n.1
title: Metagenomic data analysis reveals potential applications of mangrove soil microbiota in bioremediation and nutrient enrichment

description: Metagenomics sequencing 
The assembled genome contained 6736 shared genes between soil 1 and soil 3, 203,682 shared genes between soil 1 and soil 2, and 66,383 shared genes between soil 2 and soil 3 (Figure 1). 

Comparative analysis of metabolic pathways of bacterial diversity
Function annotation based on the KEGG, as shown in Figure 2, reveals that most of the core genes found in mangrove soils are involved in metabolic pathways. The highest genes are involved in carbohydrate metabolism and followed by amino acid metabolism. In addition, the functional annotation based on eggNOG shows the genome isolated from the soils of mangrove trees’ rhizosphere mostly contains genes that are associated with energy production and conversion, amino acid transport, metabolism, replication, recombination and repair, as well as carbohydrate transport and metabolism pathways (Figure 3). In this study, the functional annotation based on the CAZy reveals six CAZy main functions as follows: Glycoside Hydrolase (GH), Glycosyl Transferase (GT), Polysaccharide Lyase (PL), Carbohydrate Esterases (CE), Auxiliary Activities (AA) and Carbohydrate-Binding Modules (CBM) were found in collected mangrove soils (Figure 4). 

Metabolic pathways show the signature of bacteria and their function 
Carbon fixation was found to be the most prevalent pathway, followed by methane, nitrogen, sulfur, atrazine, and dioxin degradation pathways (Figure 5). Further analysis identified Chloroflexi, Gaiellales bacterium and Acidobacteria as the major microbial taxa affiliated with the carbon fixation pathway. Methanotrophic bacteria, including Methyloceanibacter caenitepidi, M. superfactus, and M. marginalis were also detected (Figure 6). Additionally, several nitrogen-fixing bacteria, such as Chloroflexi bacterium, Acidobacteria bacterium, Actinobacteria bacterium, Frankia sp., proteobacteria bacterium, Betaproteobacteria bacterium, Anaerolineae bacterium, Bradyrhizobium liaoningense, Bradyrhizobium sp., Methyloceanibacter caenitepidi, Methyloceanibacter marginalis, Methyloceanibacter superfactus, Pseudolabrys taiwanensis, Bradyrhizobium manausense, Solirubrobacter sp., Solirubrobacter soli, and Phycicoccus jejuensis were identified (Figure 6).

Furthermore, we also found the presence of sulfate-reducing bacteria (SRB), such as Thiohalobacter thiocyanaticus, Acidobacteria bacterium, Woeseia oceani, Desulfobacteraceae bacterium, Desulfobacterales bacterium, Mycolicibacterium rhodesiae, Gaiellales bacterium, Deltaproteobacteria bacterium and Myxococcales bacterium in the collected soil samples (Figure 6). The heatmap in Figure 6 also shows the presence of various bacterial species classified in the Actinobacteria phylum, including Phycicoccus jejuensis, Solirubrobacterales bacterium, Mycolicibacterium rhodesiae, M. mariokaense, Solirubrobacter sp. and S. soli in the collected soils.
DOI: 10.1594/pangaea.974598
title: World Paleoceanographic Atlas 2024.0

description: Individual files of an interactive paleoceanographic atlas (version 2024.0) provided online at paleodataview.marum.de in form of text and netCDF files containing late Quaternary paleoceanographic data of individual sites. The database contains a compilation of raw data (vs. sampling depth) and processed time series for foraminiferal isotope ratios, foraminiferal Mg/Ca and alkenone temperature along with radiocarbon dates. The webtool provides a zoomable map and options to filter, select, view and download data in various formats. Among other purposes, the online database may be of interest for stratigraphy, teaching, project/expedition planning and data-model comparisons.
description: The World Paleoceanographic Atlas 2024_0 provides proxy data as a data collection for the free software tool PaleoDataView (WPA_2024_0_PDV.zip), as ASCII files (WPA_2024_0_ASCII.zip) and as netCDF files (WPA_2024_0_netCDF.zip). The netCDF and ASCII folders contain subfolders with the raw data, equidistant time series in 0.5 kyr steps, and irregular time series generated for sample positions in the core. References and data sources are given in the individual files.
DOI: 10.17632/hd3vgfs23g.2
title: Monohansett Shipwreck 3D Reconstruction - Thunder Bay National Marine Sanctuary

description: 3D Reconstruction of the monohansett shipwreck.
DOI: 10.17632/sn5py5wbfn.1
title: Milder winters would alter patterns of freezing damage for epiphytic lichens from the trans-Himalayas

description: This is the supporting dataset to the paper Worthy et al. 2024 published in Scientific Reports. All methods used to produce the data are described in the methods section of the associated manuscript. A key is provided within each dataset to explain the headings and nature of each column of the data.

ABSTRACT
Trans-Himalayan winters are projected to become milder, with shifting precipitation patterns and freeze-thaw cycles; changing stressors for their lichen communities. Lichens from Antarctica and high latitudes are cryoresistant when dry, but susceptible to cell damage if frozen when wet, or subjected to repeated freeze-thaw events. Little is known regarding cryoresistance in high-elevation, mid-latitude lichens. We collected thalli of nine species of epiphytic lichenized fungi, from three regions of the trans-Himalayas; at ≈ 4000 m, 3400 m and 2400 m elevation. We subjected thalli to differing freezing (continuous -18°C and -36°C or freeze-thaw cycles in natural daylight) and moisture conditions. Even dry thalli suffered some damage. Frozen wet thalli had greater chlorophyll degradation and reduced chlorophyll content. There were no clear elevational trends in freeze-thaw susceptibility: it caused more damage than continuous freezing. The most freeze-thaw resilient lichens were Dolichousnea longissima (from 4000 m) and Usnea florida (from 2400 m). However, species from coldest sites were most resilient to extreme freezing. Under predicted climate change conditions these sites would experience fewer annual freeze-thaw cycles, annual sub-zero days and frost days. Reduced freezing constraints might allow range expansion of mid-elevation lichens, but increase competitive pressures and temperature stressors impacting high-elevation lichens.

HYPOTHESES
We aimed to test the following series of non-mutually exclusive hypotheses:
1. Dry thalli are less susceptible to freezing damage than are wet thalli.
2. Freeze-thaw cycles cause greater damage than continuous freezing.
3. Freeze-thaw cycles cause most damage to lichen from higher elevations.
4. Severe freezing temperatures have least impact on lichen from higher elevations.
5. Lichen from sites which rarely have sub-zero temperatures will be least able to recover after freezing damage.
DOI: 10.15468/dl.dgeda6
title: Occurrence Download

description: A dataset containing 64695 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "Country is one of (Afghanistan, Pakistan, India, Bangladesh, Sri Lanka, Nepal, Bhutan, Maldives)",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 64695 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000097-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53jgxk
title: Occurrence Download

description: A dataset containing 20213 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rachycentron canadum (Linnaeus, 1766)"
 ]
}

 The dataset includes 20213 records from 219 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000099-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/zb9ngwk5vs.2
title: Bathymetrical and hydrological data of newly formed lagoon near retreating Eidembreen glacier in Svalbard, Arctic

description: We present bathymetrical and hydrological data from newly formed lagoon between Eidembreen glacier and Eidembukta bay in Svalbard, European Arctic. Surveys were conducted in 2022 August 21-26th, 2023 August 14-19th and 2024 July 22-24th. The dataset consists of bathymetry data and hydrological data. Bathymetry data was collected using Garmin Echomap UHD 92sv sonar with GT56UHD-TM transducer, additionally, in 2022 shallow depths were measured with a sonar Deeper chirp+2. Hydrological data was collected using Valeport SWiFT SVP probe in 2022 and 2024, while in 2023 a multiparameter probe CTD115M was used. 

Bathymetrical data files consist of coordinates (longitude, latitude in WGS 1984 coordinate system) and depth measurements (in meters). Hydrological data from 2022 and 2024 consists of several parameters: depth profile (m), pressure (decibars), sound velocity (m s-1), temperature (degree Celsius), salinity (PSU), density (kg m-3), conductivity (milliSiemens per centimeter), date and time. Hydrological data from 2023 consists of following parameters: pressure (decibars), temperature (degree Celsius), conductivity (milliSiemens per centimeter), oxygen saturation (%), dissolved oxygen concentration (mg l-1), pH, photosynthetically active radiation (microeinsteins), turbidity (FTU), salinity (PSU), density (kg m-3), sound velocity (m s-1).

The dataset consists of two directories: 1) “Bathymetry”, which includes files “depths_Deeper2022”, “depths_Garmin2022”, “depths_Garmin2023”, “depths_Garmin2024”, with indication to sonar used and the year of survey; 2) “Hydrology”, which contains three subfolders “2022”, “2023” and “2024” indicating the year of survey. Each subfolder consists of files with coordinates (contains site names, longitude and latitude in WGS 1984 coordinate system) and hydrological data (contains hydrological data for each site in separate sheet). Data is provided both in .xlsx and .csv formats.

Geographic information. Edge coordinates of the Eidembukta Lagoon are: Northernmost point 78°24’19,1’’N / 12°50’33,7’’E, Easternmost point 78°22’10,4’’N / 12°55’44,8’’E, Southernmost point 78°21’13,1’’N / 12°52’34,4’’E, Westernmost point 78°22’30,8’’N / 12°45’26,8’’E.
DOI: 10.17632/tjrrsm8nmr.2
title: PilbaraCarbonateBudgets

description: Spreadsheet data of carbonate budget calculations for two island reefs of the Pilbara Western Australia. Revised and updated for new bioerosion values.
DOI: 10.17632/xx2djjddhs.1
title: In Someone Else’s Shoes: Reducing Prejudice through Perspective Taking

description: Replication files for paper: In Someone Else’s Shoes: Reducing Prejudice through Perspective Taking published at the Journal of Development Economics: 
https://www.sciencedirect.com/science/article/pii/S0304387824000580?dgcid=author
DOI: 10.15468/dl.2azbas
title: Occurrence Download

description: A dataset containing 4846 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rastrelliger kanagurta (Cuvier, 1816)"
 ]
}

 The dataset includes 4846 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000100-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/35jh7n33gm.1
title: The SPATA5-SPATA5L1 ATPase complex directs replisome proteostasis to ensure genome integrity

description: Raw data for manuscript