cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/pkxf5-2xj29
title: BacillusSubtilis_328_4hr

description: Bacillus subtitles strain 328 overexpressing ymdB.
description: <strong>Tilt Series Date:</strong> 2020-02-26</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> AB328, ΔponA ΔymdB amyE::ymdB Δhag</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Samples were prepared with Ritesh and Amit from Ilan Rosenshine and Sigal ben Yehuda labs at . the Hebrew university. See tomograms mka2020-02-08-x.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Samples were prepared as mentioned in Bacillus subtitles tomograms taken on 8th of February . 2020.</p>
<strong>Sample Preparation:</strong> Samples were prepared as mentioned in Bacillus subtitles tomograms taken on 8th of February . 2020. See tomograms mka2020-02-08-x.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-26-3/rawdata/</p>Bsubtilis_328_023.mrc,  Tilt Series (Pixel Size 0.449 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-26-3/rawdata/Bsubtilis_328_023.mrc"
        > <i class="download icon"></i> Download </a></p>

        Bsubtilis_328_023_full.rec,  Reconstruction (Pixel Size 1.796 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-26-3/3dimage_111759/Bsubtilis_328_023_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.ms92ru
title: Occurrence Download

description: A dataset containing 761 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Baileychromis centropomoides, Barboides gracilis, Barbopsis devecchii, Barbus hondeensis, Enteromius manicensis, Barbus kamaia, Enteromius motebensis, Barbus microbarbis, Labeobarbus microbarbis, Barbus microterolepis, Labeobarbus microterolepis, Barbus myersi, Enteromius radiatus, Barbus paucisquamatus, Labeobarbus paucisquamatus, Barbus tetraspilus, Barilius shariensis, Raiamas shariensis, Bathyaethiops breuseghemi, Bathyaethiops caudomaculatus, Bathyaethiops greeni, Bathybagrus grandis, Bathybagrus graueri, Bathybagrus platycephalus, Bathybagrus sianenna, Bathybagrus stappersii, Bathybagrus tetranema, Bathybates fasciatus, Bathybates ferox, Bathybates graueri, Bathybates hornii, Bathybates leo, Bathybates minor, Bathybates vittatus, Bathyclarias atribranchus, Bathyclarias euryodon, Bathyclarias filicibarbis, Bathyclarias foveolatus, Bathyclarias longibarbis, Bathyclarias nyasensis, Bathyclarias rotundifrons, Bathyclarias worthingtoni, Bathygobius casamancus, Bathygobius fuscus, Bathygobius petrophilus, Bathygobius samberanoensis, Bathygobius soporator, Bedotia albomarginata, Bedotia alveyi, Bedotia geayi, Bedotia leucopteron, Bedotia longianalis, Bedotia madagascariensis, Bedotia marojejy, Bedotia masoala, Bedotia tricolor, Belonoglanis brieni, Belonoglanis tenuis, Belonophago hutsebouti, Belonophago tinanti, Benitochromis batesii, Benitochromis conjunctus, Benitochromis finleyi, Benitochromis nigrodorsalis, Benitochromis riomuniensis, Benitochromis ufermanni, Benthochromis melanoides, Benthochromis tricoti, Boleophthalmus boddarti, Bostrychus africanus, Boulengerochromis microlepis, Boulengeromyrus knoepffleri, Brachyalestes bimaculatus, Brachyalestes carolinae, Brachyalestes comptus, Brachyalestes fwaensis, Brachyalestes imberi, Brycinus imberi, Brachyalestes jacksonii, Brachyalestes kingsleyae, Brachyalestes nurse, Brachypetersius altus, Brachypetersius cadwaladeri, Brachypetersius gabonensis, Brachypetersius huloti, Brachypetersius pseudonummifer, Brevimyrus niger, Brienomyrus brachyistius)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((28.1382 2.0599,19.1382 2.0599,19.1382 -6.9401,28.1382 -6.9401,28.1382 2.0599))"
 ]
}

 The dataset includes 761 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006025-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/ff1v3-6pc35
title: JV9082_Janelia42k

description: DotF-sfGFP fusion
description: <strong>Tilt Series Date:</strong> 2018-08-29</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal. Janelia Krios.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for the JV9082 strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-174/rawdata/</p>JV9082_201808290175.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-174/rawdata/JV9082_201808290175.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV9082_201808290175_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-174/3dimage_96731/JV9082_201808290175_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.15597300
title: Odd-Parity Quasiparticle Interference in the Superconductive Surface State of UTe2

description: This dataset contains all the data in "Odd-Parity Quasiparticle Interference in the Superconductive Surface State of UTe2".
DOI: 10.15468/dl.b62kr9
title: Occurrence Download

description: A dataset containing 202161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is USA.5.48_1",
 "TaxonKey is one of (Aphelocoma californica, Sayornis nigricans, Cathartes aura, Haemorhous mexicanus, Zenaida macroura, Corvus brachyrhynchos, Sturnus vulgaris, Mimus polyglottos, Buteo jamaicensis, Calypte anna)",
 "Year 2005-2025"
 ]
}

 The dataset includes 202161 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000603-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nf7ks2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perilla frutescens",
 "Country is Korea (Democratic People’s Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000653-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bf2je
title: Occurrence Download

description: A dataset containing 26762 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Conoclinium coelestinum"
 ]
}

 The dataset includes 26762 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000652-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pv5ktr
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perilla frutescens",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000657-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2b8mv
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hyphessobrycon parvellus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000655-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3eysjt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perilla frutescens",
 "Country is Lao People’s Democratic Republic",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000656-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qdfwyh
title: Occurrence Download

description: A dataset containing 14377 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ENGIE | Fauna Monitoring of the Serra do Assuruá Wind Farm Complex – Birds"
 ]
}

 The dataset includes 14377 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000654-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tc9prm
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Loliolus affinis"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000658-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnpeab
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Loliolus beka"
 ]
}

 The dataset includes 242 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000659-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5uxy8r
title: Occurrence Download

description: A dataset containing 195276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Aesculus hippocastanum"
 ]
}

 The dataset includes 195276 records from 1263 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000545-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8erda9
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Loliolus hardwickei"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000661-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8abc5
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perilla frutescens",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000663-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7krkd
title: Occurrence Download

description: A dataset containing 44756 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus pensylvanicus",
 "Year 2000-2025"
 ]
}

 The dataset includes 44756 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000660-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17603/ds2-z3rm-5p68
title: Future of Mass Timber Research

description: A workshop was organized to gather data from researchers and industry experts on the current and future trends in Mass Timber research. This report contains the final findings and suggestions from the workshop participants. This report can be used as a reference for researchers and practitioners in hazard mitigation community for future research directions related to Mass Timber material.
DOI: 10.25574/23700
title: Chandra X-ray Observatory ObsId 23700

description: Quantifying the Rate of Nearby Dual AGN
DOI: 10.15468/dl.dfr3wk
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ENGIE | Fauna Monitoring of the Serra do Assuruá Wind Farm Complex – Flying Mammals"
 ]
}

 The dataset includes 170 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000662-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7cvsj
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Antipathes dichotoma",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000665-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16967945
title: Future river water temperatures in Switzerland -  SwissFuRiTe

description: The SwissFuRiTe dataset consist of daily water temperature simulations from 82 catchments in Switzerland, from 1990 to 2099, made with the climate change scenarios for Switzerland (CH2018) and the hydrologic scenarios (Hydro-CH2018). Temperature simulations were conducted with the air2stream and air2water models. 

The SwissFuRiTe.zip file contains water temperature simulations as well as model input data of air temperature and river discharge in three folders Water_Temp, Air_Temp and Flow. Note that the input data have been adjusted by the authors in this study. For original air temperature and flow data as well as additional information the reader is pointed towards the sources given below. Each individual file composes all available climate simulations (GCM-RCMs) used at that station. The filename gives the following information separated by “_”:

MeteoSwiss meteorological station (ex. AIG)

FOEN Hydrological station (ex. 2009)

Emission scenario (ex. RCP8.5)

Water temperature model (ex. air2stream)

Hydrological model (ex. PREVAH-WSL)

Physical parameter (ex. Watertemperatur “Wassertemperatur”)

 

Dataset can be freely used under the License; https://creativecommons.org/licenses/by/4.0/

 

A paper and a project report describing the dataset and the underlying methods has been published:

Multi-fidelity model assessment of climate change impacts on river water temperatures, thermal extremes and potential effects on cold water fish in Switzerland. L Råman Vinnå, V Bigler, OS Schilling, J Epting., EGUsphere 2025, 1-44 (2025), https://doi.org/10.5194/egusphere-2024-3957

Swiss-wide future river temperature under climate change «SwissFuRiTe», Applied and Environmental Geology, Hydrogeology Research Group, Department of Environmental Sciences, University Basel, Bernoullistrasse 32, 4056 Basel, Report number: BGA-CH-78

 

Original model input data sources. Atmospheric temperature climate data from the CH2018 project was obtained from the Swiss National Centre for Climate Services (nccs.admin.ch) data portal. On the same portal, discharge datasets from the Hydro-CH2018 project are available but at a temporally limited scale (monthly, seasonally and yearly means). We required daily resolved discharge data which was obtained directly from Massimiliano Zappa (model M1), Daphné Freudiger (M3), and Adrien Michel (M4). Data from model M2 (Muelchi et al., 2021) is available at http://doi. org/10.5281/zenodo.3937485.
DOI: 10.5281/zenodo.16967946
title: Future river water temperatures in Switzerland -  SwissFuRiTe

description: The SwissFuRiTe dataset consist of daily water temperature simulations from 82 catchments in Switzerland, from 1990 to 2099, made with the climate change scenarios for Switzerland (CH2018) and the hydrologic scenarios (Hydro-CH2018). Temperature simulations were conducted with the air2stream and air2water models. 

The SwissFuRiTe.zip file contains water temperature simulations as well as model input data of air temperature and river discharge in three folders Water_Temp, Air_Temp and Flow. Note that the input data have been adjusted by the authors in this study. For original air temperature and flow data as well as additional information the reader is pointed towards the sources given below. Each individual file composes all available climate simulations (GCM-RCMs) used at that station. The filename gives the following information separated by “_”:

MeteoSwiss meteorological station (ex. AIG)

FOEN Hydrological station (ex. 2009)

Emission scenario (ex. RCP8.5)

Water temperature model (ex. air2stream)

Hydrological model (ex. PREVAH-WSL)

Physical parameter (ex. Watertemperatur “Wassertemperatur”)

 

Dataset can be freely used under the License; https://creativecommons.org/licenses/by/4.0/

 

A paper and a project report describing the dataset and the underlying methods has been published:

Multi-fidelity model assessment of climate change impacts on river water temperatures, thermal extremes and potential effects on cold water fish in Switzerland. L Råman Vinnå, V Bigler, OS Schilling, J Epting., EGUsphere 2025, 1-44 (2025), https://doi.org/10.5194/egusphere-2024-3957

Swiss-wide future river temperature under climate change «SwissFuRiTe», Applied and Environmental Geology, Hydrogeology Research Group, Department of Environmental Sciences, University Basel, Bernoullistrasse 32, 4056 Basel, Report number: BGA-CH-78

 

Original model input data sources. Atmospheric temperature climate data from the CH2018 project was obtained from the Swiss National Centre for Climate Services (nccs.admin.ch) data portal. On the same portal, discharge datasets from the Hydro-CH2018 project are available but at a temporally limited scale (monthly, seasonally and yearly means). We required daily resolved discharge data which was obtained directly from Massimiliano Zappa (model M1), Daphné Freudiger (M3), and Adrien Michel (M4). Data from model M2 (Muelchi et al., 2021) is available at http://doi. org/10.5281/zenodo.3937485.
DOI: 10.15468/dl.4426yv
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perilla frutescens",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000664-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yeckth
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pempheris rhomboidea",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 144 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000666-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxuqy4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Antipathes fragilis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000669-250827131500795/datasets/export for details.
DOI: 10.15468/dl.6hrj2a
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perilla frutescens",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000671-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.