cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vpzfzxfngj
title: Together or Apart? Database of The Dynamics of Deforestation in the Amazonian Urban Weft

description: Starting in the 20th century, cities in the Amazon assumed a strategic role as logistical bases for the occupation and development of the territory, serving as support for the expansion of pioneer frontiers that find their physical expression in the forested landscape. Following a previously defined theoretical-methodological approach (Ribeiro et al., 2024), the urban weft (Ribeiro, 2024) is used as a reference to represent the extensive and often overlooked Amazonian urban network and to identify how industrial-capitalist urbanization has been altering relationships with nature. This database contributes to broadening the analysis of the environmental dimension of the urban weft, incorporating, beyond the presence and percentage of primary forests and rivers, an understanding of the dynamics of deforestation in the Amazonian urban weft.

To identify patterns and highlight regions that are more or less exposed and under pressure, the deforestation data from PRODES (INPE, 2024) serves as a baseline for constructing variables that help interpret both historical and recent processes of forest conversion in the Amazonian urban weft (Ribeiro et al., 2024). Additionally, the land use and land cover mapping from the TerraClass project (Almeida et al., 2014) contributes to the analysis of forest regeneration, identifying regions with potential for forest recovery as a symbolic element with productive potential. The analysis is conducted using the state of Pará as the study area and generates three indicators as outputs: (i) PFLO - Forest Loss, highlighting cells with over 50% forest loss associated with deforestation processes from 1988 to 2023; (ii) PRFLO - Recent Forest Loss, highlighting cells with over 50% forest loss associated with deforestation processes since 2008; and (iii) Forest Regeneration, highlighting cells with over 50% secondary vegetation mapped in 2020.

References:

Ribeiro, R. M. et al. A trama urbana amazônica: proposta metodológica para reconhecimento de um território de possibilidades. Revista Brasileira de Estudos Urbanos e Regionais, 26(1), 2024.

Ribeiro, R. M. The Amazon Urban Weft: Database of SocioSpatial and Nature Dimensions. Mendeley Data, V1, 2024. doi: 10.17632/rfpjy3r4pg.1

INPE - Instituto Nacional de Pesquisas Espaciais. Taxa de Desmatamento de 2023. Amazônia. 2024. Disponível em . Acesso em 25 de agosto de 2024.

Almeida, C. et al. TerraClass: classificação dos padrões de uso e cobertura da terra da Amazônia Legal. Cenários para a Amazônia: clima, biodiversidade e uso da terra, p. 137-147, 2014.
DOI: 10.17632/vpzfzxfngj.1
title: Together or Apart? Database of The Dynamics of Deforestation in the Amazonian Urban Weft

description: Starting in the 20th century, cities in the Amazon assumed a strategic role as logistical bases for the occupation and development of the territory, serving as support for the expansion of pioneer frontiers that find their physical expression in the forested landscape. Following a previously defined theoretical-methodological approach (Ribeiro et al., 2024), the urban weft (Ribeiro, 2024) is used as a reference to represent the extensive and often overlooked Amazonian urban network and to identify how industrial-capitalist urbanization has been altering relationships with nature. This database contributes to broadening the analysis of the environmental dimension of the urban weft, incorporating, beyond the presence and percentage of primary forests and rivers, an understanding of the dynamics of deforestation in the Amazonian urban weft.

To identify patterns and highlight regions that are more or less exposed and under pressure, the deforestation data from PRODES (INPE, 2024) serves as a baseline for constructing variables that help interpret both historical and recent processes of forest conversion in the Amazonian urban weft (Ribeiro et al., 2024). Additionally, the land use and land cover mapping from the TerraClass project (Almeida et al., 2014) contributes to the analysis of forest regeneration, identifying regions with potential for forest recovery as a symbolic element with productive potential. The analysis is conducted using the state of Pará as the study area and generates three indicators as outputs: (i) PFLO - Forest Loss, highlighting cells with over 50% forest loss associated with deforestation processes from 1988 to 2023; (ii) PRFLO - Recent Forest Loss, highlighting cells with over 50% forest loss associated with deforestation processes since 2008; and (iii) Forest Regeneration, highlighting cells with over 50% secondary vegetation mapped in 2020.

References:

Ribeiro, R. M. et al. A trama urbana amazônica: proposta metodológica para reconhecimento de um território de possibilidades. Revista Brasileira de Estudos Urbanos e Regionais, 26(1), 2024.

Ribeiro, R. M. The Amazon Urban Weft: Database of SocioSpatial and Nature Dimensions. Mendeley Data, V1, 2024. doi: 10.17632/rfpjy3r4pg.1

INPE - Instituto Nacional de Pesquisas Espaciais. Taxa de Desmatamento de 2023. Amazônia. 2024. Disponível em . Acesso em 25 de agosto de 2024.

Almeida, C. et al. TerraClass: classificação dos padrões de uso e cobertura da terra da Amazônia Legal. Cenários para a Amazônia: clima, biodiversidade e uso da terra, p. 137-147, 2014.
DOI: 10.17632/g4g3zjb4sg.1
title: Complex electrical signatures of Maize and Brachypodium primary roots

description: We investigated the frequency-dependent electrical properties in terms of conduction and polarization of single root segments of Brachypodium (Brachypodium distachyon L.) and Maize (Zea mays L.). First we designed a sample holder to investigate the electrical properties of root segments and tested it on ideal resistors. We found that it is suitable to assess the electrical properties of crop root segments of 1-5 cm length in a frequency range between 1 Hz and 45 kHz. The system was then used to obtain the complex electrical response of Brachypodium and Maize root segments at 10 different ages, from 8-29 days after sowing (DAS). It was found that the electrical properties of the root segments varied with age and species. This variation was linked to root anatomy based on the microscopic analysis of root sections.
DOI: 10.17632/k9yzb46xg2.1
title: LINF_360078850

description: mitoribosomal protein mS74
Leishmania infantum (strain JPCM5)
DOI: 10.17632/b3xdz2chn4
title: LDHU3_19.1430

description: Actin-related protein 2 | Arp2; Leishmania donovani (HU3 strain)
DOI: 10.17632/b3xdz2chn4.1
title: LDHU3_19.1430

description: Actin-related protein 2 | Arp2; Leishmania donovani (HU3 strain)
DOI: 10.17632/dd4y9w3ztd.1
title: LINF_360078300

description: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | iPGAM
Leishmania infantum (strain JPCM5)
DOI: 10.17632/dhjbc4737m.1
title: LINF_360078100

description: SAS-6_N domain-containing protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/23xjr97v6w.1
title: LINF_360078800

description: hypothetical protein - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.w833dt
title: Occurrence Download

description: A dataset containing 20966 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Falco naumanni J.G.Fleischer, 1818)",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 20966 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004458-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/b3rtrz3h9c.1
title: LINF_360078400

description: 2′-O-ribose methyltransferase | MTr1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/pfntdc9ndy.1
title: Investigation of laser-induced cavity and plasma formation in water using double-pulse LIBS

description: Investigation of cavity and plasma formation on samples under water using a double pulse laser SpitLight Compact 400 PIV of the company Innolas Laser GmbH. High-speed images were taken by a high-speed camera IDT MotionPro Y7-S3. Spectra were measured with a spectrometer AvaSpec-ULS750F-USB2. Both laser pulses, high-speed camera and spectrometer were triggered by a delay generator Quantum Composers 9400 Series (MODEL 9428).
DOI: 10.17632/9z6sxc3bw4.1
title: Ductile Behavior Assisted by Continuous Dynamic Recrystallization During High-Temperature Deformation of Calcium-Added Magnesium Alloy AZX612

description: Magnesium alloys containing Ca have an ignition point above the melting point and are known as non-inflammable magnesium alloys. Herein, the texture and microstructure formation of a Ca-added alloy, AZX612, during uniaxial tensile deformation at elevated temperatures is reported. The total elongation increases with temperature primarily due to prolonged unstable plastic deformation. The texture formed by room-temperature deformation is the conventional deformation texture of magnesium, which has 〈101 ̅0〉 along the tensile axis as the main component. At 573 K, the texture remains almost unchanged, even after straining up to 84%. Results of microstructural analysis show that fine dynamically recrystallized grains exhibit a weak texture at 573 K. Additionally, the deformed matrix exhibits a texture similar to that formed via room-temperature deformation. The significant elongation at high temperatures is attributable to the relaxation of strain concentration via continuous dynamic recrystallization.
DOI: 10.17632/v8k9wzgn35
title: LDHU3_19.1470

description: Mitoribosomal protein mL82; Leishmania donovani (HU3 strain)
DOI: 10.17632/v8k9wzgn35.1
title: LDHU3_19.1470

description: Mitoribosomal protein mL82; Leishmania donovani (HU3 strain)
DOI: 10.17632/tj6yzp9rzy.1
title: Vegetable Oils Article Archives_CNSL_JTB

description: Our data availability statement needs to be amended to conforms with the Journal of Thermal Biology and Elsevier guidelines: Thermal, physiology, biochemical, feed seletibility, ingestive behavior.
DOI: 10.17632/7n6z9trvz6.1
title: LINF_360079300

description: prolyl oligopeptidase | POP
Leishmania infantum (strain JPCM5)
DOI: 10.17632/txkz6d9v4k.1
title: LINF_360079100

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.28239698
title: Dialogue between organizations and publics in the digital era: the “unfulfilled promise” of new media and the consultancy discourse in Spain

description: The expansion of digital communication technologies has been accompanied by the development of a “dialogical theory” of Public Relations, a theory that saw in new media the potential to implement ethical principles about dialogue to communications between organizations and publics. This article studies the current situation of the subject from two points of view: a critical literature review and discourse analysis of the 40 largest public relations consulting companies in Spain. As a result of the first component, “the unfulfilled promise” of the new media is highlighted. The analysis of the consulting discourse, on the other hand, shows the preference given to conversation and engagement as alternative concepts, the persistence of the discursive connection between digital technology and dialogic processes, as well as the existence of three basic forms this connection assumes. Theoretical and practical implications of these results are discussed.
DOI: 10.17632/6rpstxd4jx.1
title: LINF_360079400

description: ATP synthase delta (OSCP) subunit
Leishmania infantum (strain JPCM5)
DOI: 10.17632/5j8dp56sx8.1
title: LINF_360078900

description: AAA+-ATPase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/h32z9kcz3s.1
title: QOPTLib: a Quantum Computing Oriented Benchmark for Combinatorial Optimization Problems

description: # QOPTLib

QOPTLib is a quantum computing oriented benchmark for combinatorial optimization. QOPTLib is comprised of 40 different instances, equally distributed among for well-known problems: Traveling Salesman Problem, Vehicle Routing Problem, one-dimensional Bin Packing Problem and the Maximum Cut Problem.
DOI: 10.17632/zr4ktmwm8m.1
title: LINF_240025000

description: Cyclin 10; Leishmania infantum (strain JPCM5)
DOI: 10.17632/cnjj8smxr3.1
title: Krewer et al., 2024 -SI

description: Supplementary Information for Krewer et al., 2024 - Controls on the termination of Cretaceous Oceanic Anoxic Event 2 in the Tarfaya Basin, Morocco.
Accepted for publication in American Journal of Science.
DOI: 10.17632/sztrdcmzdw.1
title: LINF_360079500

description: adaptin complex 1 subunit | beta adaptin
Leishmania infantum (strain JPCM5)
DOI: 10.17632/4b2cf8hmp8.1
title: Divergent association between pain intensity and resting‐state fMRI‐based brain entropy in different age groups

description: This repository contains brain entropy maps and behavioral data used for the study: Del Mauro, G., Sevel, L. S., Boissoneault, J., & Wang, Z. (2024). Divergent association between pain intensity and resting‐state fMRI‐based brain entropy in different age groups. Journal of Neuroscience Research, 102(5), e25341.
DOI: 10.15468/dl.89xnw3
title: Occurrence Download

description: A dataset containing 22997 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Orochelidon murina (Cassin, 1853)"
 ]
}

 The dataset includes 22997 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004459-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/5c9z9664h4.1
title: LINF_260031800

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/wtcftkrft3.1
title: LINF_260023400

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.9473wn
title: Occurrence Download

description: A dataset containing 3802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Platysteira peltata Sundevall, 1850)",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 3802 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004460-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/rdb573ywrr.1
title: LINF_260015900

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/79nt8gz4m7.1
title: Alkaloyd metabolomics on tumor cell lines

description: Metabolomics data on Jurkat and MM1S cell lines exposed to sanguinarin and chelerythin, supporting the manuscript "Revisiting the cytotoxicity and antitumoral potential of benzo-phenanthridine alkaloids through combined omics" (under submission)
DOI: 10.17632/v99fg59xb3.1
title: LINF_270017200

description: Tetratricopeptide repeat (TPR) domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/z28xbmhr2j
title: Blocking the CXCL10-IL18R1 Axis Protects Ovaries from Tumor-induced Damage

description: The ovary is susceptible to harmful environmental factors (hEFs). Tumor invasion is an intracorporal hEF. However, it is unclear whether and how tumor invasion compromises ovarian function, making it challenging to target and prevent this harm prior to diagnosis and cancer treatment. To develop a targeted therapy to protect ovarian function during tumor invasion, we used MCA205 (mouse fibrosarcoma) cell-allotransplanted B6 mice as a basic model (M group), and two popular therapeutic models—PD-1 monoclonal antibody injection in allotransplanted B6 mice (PD-1 group) and whole cancer cell vaccine (WCV) injection in allotransplanted B6 mice (WCV group)—to facilitate the discovery process. As expected, tumor infiltration in the M group reduced ovarian function in multiple ways. Interestingly, WCV injection strongly restored these anomalies, whereas PD-1 did not. Next, plasma cytokine microarrays revealed that the level of CXCL10 increased in the M group and was the best rescue in the WCV group. Next, we baited the sole CXCL10 receptor found in the ovaries, IL18R1. CXCL10 impairs ovarian function via three pathways: generating fibrosis through CXCL10→IL18R1→p-JNK→COL1A1, encouraging primordial follicle overactivation through CXCL10→IL18R1→p-AKT, and increasing ovarian inflammation through CXCL10→IL18R1→p-P65. To improve ovarian function in the M group, we blocked the CXCL10→IL18R1 pathway with CXCL10 antibody or CIBB, an interface peptide. This study provides mechanical evidence and translational evidence for how tumor invasion compromises ovaries functioning and how to target and protect ovaries during tumor invasion.
Supplementary dataset 1
Related to Fig. 3A and 3B. This file includes two sheets. “All_samples-fpkm” includes FPKM values of all identified genes in ovaries from the CTR, M, VM, and PM groups (three repeats per group); “heatmap” includes all average log2 values (from three repeats per group) of 435 DEGs (differentially expressed genes) at the threshold of |log2(M/CTR)| ≥ 1.
Supplementary dataset 2
Related to Fig. 3C. This file includes 33 sheets. “Summary” includes all conc. Values (pg/mL) of 31 plasma DECs (differentially expressed cytokines); “Curves” include standard curves for all 31 cytokines; each of the other 31 sheets includes detailed assays for each plasma cytokine for the CTR, M, VM, and PM groups (five repeats per group).
Supplementary dataset 3
Related to Fig. 5A. This file includes two sheets. “peptides” includes all related values of all identified peptides; “Protein Groups” includes the related info. All the proteins corresponded to the identified peptides.
DOI: 10.17632/z28xbmhr2j.1
title: Blocking the CXCL10-IL18R1 Axis Protects Ovaries from Tumor-induced Damage

description: The ovary is susceptible to harmful environmental factors (hEFs). Tumor invasion is an intracorporal hEF. However, it is unclear whether and how tumor invasion compromises ovarian function, making it challenging to target and prevent this harm prior to diagnosis and cancer treatment. To develop a targeted therapy to protect ovarian function during tumor invasion, we used MCA205 (mouse fibrosarcoma) cell-allotransplanted B6 mice as a basic model (M group), and two popular therapeutic models—PD-1 monoclonal antibody injection in allotransplanted B6 mice (PD-1 group) and whole cancer cell vaccine (WCV) injection in allotransplanted B6 mice (WCV group)—to facilitate the discovery process. As expected, tumor infiltration in the M group reduced ovarian function in multiple ways. Interestingly, WCV injection strongly restored these anomalies, whereas PD-1 did not. Next, plasma cytokine microarrays revealed that the level of CXCL10 increased in the M group and was the best rescue in the WCV group. Next, we baited the sole CXCL10 receptor found in the ovaries, IL18R1. CXCL10 impairs ovarian function via three pathways: generating fibrosis through CXCL10→IL18R1→p-JNK→COL1A1, encouraging primordial follicle overactivation through CXCL10→IL18R1→p-AKT, and increasing ovarian inflammation through CXCL10→IL18R1→p-P65. To improve ovarian function in the M group, we blocked the CXCL10→IL18R1 pathway with CXCL10 antibody or CIBB, an interface peptide. This study provides mechanical evidence and translational evidence for how tumor invasion compromises ovaries functioning and how to target and protect ovaries during tumor invasion.
Supplementary dataset 1
Related to Fig. 3A and 3B. This file includes two sheets. “All_samples-fpkm” includes FPKM values of all identified genes in ovaries from the CTR, M, VM, and PM groups (three repeats per group); “heatmap” includes all average log2 values (from three repeats per group) of 435 DEGs (differentially expressed genes) at the threshold of |log2(M/CTR)| ≥ 1.
Supplementary dataset 2
Related to Fig. 3C. This file includes 33 sheets. “Summary” includes all conc. Values (pg/mL) of 31 plasma DECs (differentially expressed cytokines); “Curves” include standard curves for all 31 cytokines; each of the other 31 sheets includes detailed assays for each plasma cytokine for the CTR, M, VM, and PM groups (five repeats per group).
Supplementary dataset 3
Related to Fig. 5A. This file includes two sheets. “peptides” includes all related values of all identified peptides; “Protein Groups” includes the related info. All the proteins corresponded to the identified peptides.
DOI: 10.17632/tdxv8x7b7r.2
title: 14C DATABASE for the TRB site of Kałdus, PL

description: Set of radiocarbon dates, sampled from the TRB site in Kałdus, Chełmno commune, Poland
DOI: 10.17632/y2j5ybptzd.1
title: Raw data - Music emotion items - Musicians and nonmusicians

description: Raw data with responses from 200 participants (100 musicians) on the perceived emotion and the valence and arousal of 116 musical stimuli. Additionally, we have the BAI and BDI, and a musical background questionnaire responses.
DOI: 10.17632/8jsd4ds57k.2
title: Supplementary data for the article: Study of Arsenophonus symbionts in Hippoboscidae

description: Alignments:
1. Arsenophonus matrix - concatenated matrix of 57 ortholog sequences (AA) extracted from all available Arsenophonus proteomes (analyzed by PhyML, PhyloBayes and IQ-TREE2) in a fasta format
2. Host mitochondrial matrix - concatenated matrix of 12 mitochondrial genes (NA) extracted from 12 mitochondrial genomes of hippoboscids (analyzed by IQ-TREE2) in a fasta format
3. Host COI matrix - phylogenetic matrix of COI mitochondrial gene (NA) of 63 taxa of hippoboscids (analyzed by IQ-TREE2) in a fasta format

Phylogenetic trees folder:
Phylogenetic trees generated by PhyML, PhyloBayes and IQ-TREE2 in a newick format.

Annotations folder:
Annotations of the complete genomes and genome drafts for the the newly described Arsenophonus symbionts of hippoboscids in gbk format.

Detailed description of used methods can be found in the Materials and Methods section.
DOI: 10.17632/6vw56jj5x7
title: Surface deformation monitoring data of Salt Lake to Wuli section along Qinghai-Tibet Railway

description: Surface deformation monitoring data of six typical areas along the Qinghai-Tibet Railway from Salt Lake to Wuli from 2019 to 2022
DOI: 10.17632/6vw56jj5x7.1
title: Surface deformation monitoring data of Salt Lake to Wuli section along Qinghai-Tibet Railway

description: Surface deformation monitoring data of six typical areas along the Qinghai-Tibet Railway from Salt Lake to Wuli from 2019 to 2022