cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.47sd5
title: Data from: A call for more transparent reporting of error rates: the quality of AFLP data in ecological and evolutionary research

description: Despite much discussion of the importance of quantifying and reporting
 genotyping error in molecular studies, it is still not standard practice
 in the literature. This is particularly a concern for amplified fragment
 length polymorphism (AFLP) studies, where differences in laboratory,
 peak-calling and locus-selection protocols can generate data sets varying
 widely in genotyping error rate, the number of loci used and potentially
 estimates of genetic diversity or differentiation. In our experience,
 papers rarely provide adequate information on AFLP reproducibility, making
 meaningful comparisons among studies difficult. To quantify the extent of
 this problem, we reviewed the current molecular ecology literature (470
 recent AFLP articles) to determine the proportion of studies that report
 an error rate and follow established guidelines for assessing error.
 Fifty-four per cent of recent articles do not report any assessment of
 data set reproducibility. Of those studies that do claim to have assessed
 reproducibility, the majority (~90%) either do not report a specific error
 rate or do not provide sufficient details to allow the reader to judge
 whether error was assessed correctly. Even of the papers that do report an
 error rate and provide details, many (≥23%) do not follow recommended
 standards for quantifying error. These issues also exist for other marker
 types such as microsatellites, and next-generation sequencing techniques,
 particularly those which use restriction enzymes for fragment generation.
 Therefore, we urge all researchers conducting genotyping studies to
 estimate and more transparently report genotyping error using existing
 guidelines and encourage journals to enforce stricter standards for the
 publication of genotyping studies.
description: Extracted information
 from AFLP studiescv_Extracted_AFLP_Data.csv
DOI: 10.5061/dryad.1jr25
title: Data from: Hybridization facilitates evolutionary rescue

description: The resilience of populations to rapid environmental degradation is a
 major concern for biodiversity conservation. When environments deteriorate
 to lethal levels, species must evolve to adapt to the new conditions to
 avoid extinction. Here, we test the hypothesis that evolutionary rescue
 may be enabled by hybridization, because hybridization increases genetic
 variability. Using experimental evolution, we show that interspecific
 hybrid populations of Saccharomyces yeast adapt to grow in more highly
 degraded environments than intraspecific and parental crosses, resulting
 in survival rates far exceeding those of their ancestors. We conclude that
 hybridization can increase evolutionary responsiveness and that taxa able
 to exchange genes with distant relatives may better survive rapid
 environmental change.
description: optical density data for
 GLMMThis file contains the
 raw data (in .txt format) used in generalized linear mixed effect models,
 to measure survival of yeast populations in deteriorating environments.
 Variable names are self-explanatory.
DOI: 10.5061/dryad.6cp6f
title: Data from: Controlled iris radiance in a diurnal fish looking at prey

description: Active sensing using light, or active photolocation, is only known from
 deep sea and nocturnal fish with chemiluminescent "search"
 lights. Bright irides in diurnal fish species have recently been proposed
 as a potential analogue. Here, we contribute to this discussion by testing
 whether iris radiance is actively modulated. The focus is on behaviourally
 controlled iris reflections, called "ocular sparks". The
 triplefin Tripterygion delaisi can alternate between red and blue ocular
 sparks, allowing us to test the prediction that spark frequency and hue
 depend on background hue and prey presence. In a first experiment, we
 found that blue ocular sparks were significantly more often "on"
 against red backgrounds, and red ocular sparks against blue backgrounds,
 particularly when copepods were present. A second experiment tested
 whether hungry fish showed more ocular sparks, which was not the case.
 Again, background hue resulted in differential use of ocular spark types.
 We conclude that iris radiance through ocular sparks in T. delaisi is not
 a side effect of eye movement, but adaptively modulated in response to the
 context under which prey are detected. We discuss the possible alternative
 functions of ocular sparks, including an as yet speculative role in active
 photolocation.
description: Michiels et al. spectral
 data ocular sparks Figure 3Estimated absolute
 spectra for blue and red ocular sparks under the blue illumination under
 which the experiments took place.Michiels et al. data
 experiment 1 figure 4 table 1Results from experiment
 one, showing the occurrence of red and blue ocular sparks in the presence
 or absence of copepods against a blue or red
 background.Michiels et al. data
 experiment 2 figure 5 table 2Frequencies of blue and
 red ocular sparks in individuals in either a hungry or satiated state,
 with copepods presented against a blue or red
 background.Michiels et al. All data
 for ESM 6 - reflectance spectra of copepod eyesReflectance spectra of
 three ocelli, cuticle and red pigmented eye centre relative to a diffuse
 white standard.ESM 6 Michiels et al. All data
 for ESM 6.xlsx
DOI: 10.5061/dryad.1cr40
title: Data from: A new infrageneric classification of Meconopsis (Papaveraceae) based on a well-supported molecular phylogeny

description: Meconopsis is an herbaceous genus native to the high altitude habitats
 across the Himalaya and adjacent plateau and mountain areas. Attractive
 Meconopsis flowers have spurred many European botanists to study the
 taxonomy of the genus resulting in numerous infrageneric classifications,
 dating from the first taxonomic revision in the late 19th Century until
 the most recent monograph in 2014. All, however, were morphology-based
 treatments and largely inconsistent with one another. To investigate the
 incongruence among the previous taxonomic grouping strategies of the
 species in Meconopsis and settle the controversies, we employed a
 well-resolved molecular phylogeny built by analyzing four chloroplast
 markers (trnL-trnF intergenic spacer, matK, ndhF, and rbcL). We found that
 the evolutionary relationships revealed by our phylogeny disagreed to
 varying degrees with any infrageneric relationship suggested by previous
 authors. Therefore, we propose a revised classification based on our
 phylogenetic topology as well as the morphological and cytological
 patterns reflected by the phylogenetic structure. To achieve a practical
 and approachable system, we have tried to retain as much as possible of
 phylogenetically meaningful components from previous taxonomies for the
 genus. As a result, we used the four major clades of our Meconopsis
 phylogeny as the bases for infrageneric sections (Meconopsis sect.
 Meconopsis, M. sect. Aculeatae, M. sect. Primulinae, and M. sect.
 Grandes). A key to the sections is provided, followed by a description and
 composition of each.
description: Meconopsis concatenated
 sequences4 sequences were
 concatenated for analysis in the order of 1. matK; 2. nNdhF; 3. rbcL; 4
 trnL-trnF.Nucleotide alignment for
 Dryad.nex
DOI: 10.5061/dryad.40rd6
title: Data from: Murky waters: searching for structure in genetically depauperate blue threadfin populations of Western Australia

description: The blue threadfin (Eleutheronema tetradactylum) is an exploited fishery
 species in southeast Asia and Australia. Demographic studies have revealed
 fine-scale stock structure throughout the Australian coastline, with
 demographically isolated populations separated by only tens of km.
 Similarly, population genetic analysis revealed fine-scale structure
 across most of its Australian range with important implications for
 fisheries management. However, in northern Western Australia, genetic
 stock structure analysis showed a contradictory lack of structure. In the
 present study, one mtDNA marker and a suite of five microsatellite loci
 were used to further investigate the stock structure of Western Australian
 blue threadfin populations. By increasing sample sizes from previously
 investigated areas: Roebuck Bay (n = 93 adults) and Eighty-mile Beach (n =
 92 adults and 163 recruits from two settlement cohorts), we were able to
 detect subtle genetic differentiation that was previously obscured by low
 levels of genetic polymorphism. Therefore, the same fine-scale stock
 structure that has been observed elsewhere in this species also appears to
 exist in Western Australia. This has clear ramifications for a revised
 management strategy that incorporates the fine scale structuring of
 northwest Western Australian stocks of the blue threadfin.
description: WAEtetfasta file of Cytochrome
 oxidase I sequences.WAsats_finalAn XL spreadsheet in GenAlEX format of microsatellite scores from five loci.
DOI: 10.5061/dryad.36077
title: Data from: Evidence for a recent horizontal transmission and spatial spread of Wolbachia from endemic Rhagoletis cerasi (Diptera: Tephritidae) to invasive Rhagoletis cingulata in Europe

description: The widespread occurrence of Wolbachia in arthropods and nematodes
 suggests that this intracellular, maternally inherited endosymbiont has
 the ability to cross species boundaries. However, direct evidence for such
 a horizontal transmission of Wolbachia in nature is scarce. Here, we
 compare the well-characterized Wolbachia infection of the European cherry
 fruit fly, Rhagoletis cerasi, with that of the North American eastern
 cherry fruit fly, Rhagoletis cingulata, recently introduced to Europe.
 Molecular genetic analysis of Wolbachia based on multilocus sequence
 typing and the Wolbachia surface protein wsp showed that all R. cingulata
 individuals are infected with wCin2 identical to wCer2 in R. cerasi. In
 contrast, wCin1, a strain identical to wCer1 in R. cerasi, was present in
 several European populations of R. cingulata, but not in any individual
 from the United States. Surveys of R. cingulata from Germany and Hungary
 indicated that the frequency of wCin1 infection increased dramatically in
 just a few years with at least two independent horizontal transmission
 events in Germany and Hungary. This is further corroborated by the
 analysis of the mitochondrial cytochrome oxidase II gene that showed
 linkage of wCin1 with two distinct haplotypes in Germany, one of which is
 also infected with wCin1 in Hungary. In summary, our study provides strong
 evidence for a very recent interspecific Wolbachia transmission with a
 subsequent spatial spread in field populations.
description: cloning
 hcpAFasta file of the
 plasmid clones for the locus hcpA.hcpA.fastacloning gatBFasta file of the plasmid clones for the locus gatB.gatB.fastacloning wspFasta file of the plasmid clones for the locus wsp.wsp.fastacloning ftsZFasta file of the plasmid clones for the locus ftsZ.ftsZ.fastacloning fbpAFasta file of the plasmid clones for the locus fbpA.fbpA.fastacloning coxAFasta file of the plasmid clones for the locus coxA.coxA.fastacloning COIIFasta file of the plasmid clones of the partial COII gene.COIIcloning.fastadirectly sequenced COIIFasta files of the directly sequenced partial COII genes.COII.fastaR. cingulata detailThis Excel file provides information about all individuals from Germany, Hungary and USA analyzed in this study i.e. Wolbachia infection of each individual: + infected, - not infected; year of collection; mitochondrial haplotype: HT1-HT8.cingulata detail.xls
DOI: 10.5061/dryad.91d71
title: Data from: Early evolution of sexual dimorphism and polygyny in Pinnipedia

description: Sexual selection is one of the earliest areas of interest in evolutionary
 biology. And yet, the evolutionary history of sexually dimorphic traits
 remains poorly characterized for most vertebrate lineages. Here, we report
 on evidence for the early evolution of dimorphism within a model mammal
 group, the pinnipeds. Pinnipeds show a range of sexual dimorphism and
 mating systems that span the extremes of modern mammals, from monomorphic
 taxa with isolated and dispersed mating to extreme size dimorphism with
 highly ordered polygynous harem systems. In addition, the degree of
 dimorphism in pinnipeds is closely tied to mating system, with strongly
 dimorphic taxa always exhibiting a polygynous system, and more monomorphic
 taxa possessing weakly polygynous systems. We perform a comparative
 morphological description, and provide evidence of extreme sexual
 dimorphism (similar to sea lions), in the Miocene-aged basal pinniped
 taxon Enaliarctos emlongi. Using a geometric morphometric approach and
 combining both modern and fossil taxa we show a close correlation between
 mating system and sex-related cranial dimorphism, and also reconstruct the
 ancestral mating system of extant pinnipeds as highly polygynous. The
 results suggest that sexual dimorphism and extreme polygyny in pinnipeds
 arose by 27 Ma, in association with changing climatic conditions.
description: Appendix 2 - Data
 TablesAll measurements,
 morphometric, and statistical data associated with this project and
 referred to within the manuscript.Appendix2.docx
DOI: 10.5061/dryad.dh769
title: Data from: Quantifying network resilience: comparison before and after a major perturbation shows strengths and limitations of network metrics

description: 1. The resilience literature often assumes that social–ecological
 reorganization will result in either the removal of deficient system
 elements (components, interactions) or social learning. Major
 perturbations are expected to lead to either adaptation or, if accompanied
 by a regime shift, transformation. This has led to a conflation of the
 concepts of resilience and adaptation, which has in turn made it difficult
 to quantitatively distinguish between cases in which a system returned to
 a previous state, and adaptation or learning occurred, and cases in which
 the system was resilient but adaptation or learning did not occur. 2. We
 used a network analysis of nine years of ostrich movement data to explore
 the social–ecological resilience of the Western Cape ostrich industry,
 which nearly collapsed following an outbreak of highly pathogenic avian
 influenza in 2011 and has gradually rebuilt. 3. The system that emerged
 following the outbreak contained fewer farms but was more connected than
 at any period prior to the outbreak. As system reorganization proceeded,
 network traits began to fluctuate seasonally and to approach values
 similar to those observed prior to the outbreak. It was estimated that it
 would take 4–5 full seasonal cycles for the system to return to a similar
 state to that prior to the disease outbreak. In other words, although the
 system reorganized following the system collapse, it remained within the
 same regime and showed no obvious evidence of adaptation or learning. 4.
 Policy implications. The majority of previous work on studying system
 response to disturbance has focused on outcome-based adaptation and
 learning. This study highlights the need to understand systems that
 respond to disturbance without learning or adaptation. Network analysis
 offers a useful quantitative tool for exploring social–ecological
 resilience and tracking changes in vulnerability. However, the development
 of better ways of incorporating additional data from multiple scales into
 network analysis remains an important priority for improving the
 predictive power and policy relevance of network approaches to analysing
 resilience.
description: Ostrich Movement Records
 2009-2014This dataset includes
 all data that was used for the paper. It includes each movement that
 occurred in the Ostrich export industry between September 2009 - March
 2014 (excluding May-Aug 2011 which is explained in the paper). The columns
 of data include: Source (Farm ID where the shipment of ostriches
 originated), Target (Farm ID where shipment of ostriches are being sent
 to), Weight (the number of ostriches being moved), Year (year the movement
 occurred) and Month (month the movement occurred).qry_fordataarchive.txt
DOI: 10.15468/dl.tmf23x
title: Occurrence Download

description: A dataset containing 66207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphorbia esula",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 66207 records from 633 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000566-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18417209
title: Aircraft Data from the University of York's LIF-SO2 Instrument

description: Aircraft Data from the University of York's LIF-SO2 Instrument, presented in the publication 'An intercomparison of aircraft sulfur dioxide measurements in clean and polluted marine environments' by L. G. Temple et al. (2026). These data are from the ACRUISE-3 (C285, C286, C287) and ACSIS-7 (C289, C290, C292, C293) flight campaigns.
DOI: 10.5281/zenodo.18417210
title: Aircraft Data from the University of York's LIF-SO2 Instrument

description: Aircraft Data from the University of York's LIF-SO2 Instrument, presented in the publication 'An intercomparison of aircraft sulfur dioxide measurements in clean and polluted marine environments' by L. G. Temple et al. (2026). These data are from the ACRUISE-3 (C285, C286, C287) and ACSIS-7 (C289, C290, C292, C293) flight campaigns.
DOI: 10.5281/zenodo.18420277
title: PROSPECTS FOR IMPLEMENTING CLOUD TECHNOLOGIES IN STATISTICAL ACTIVITIES

description:  This article examines the possibilities and practical directions for the wide and effective use of cloud technologies in statistical activities under the conditions of the emerging digital economy. Particular attention is paid to the role of cloud computing in improving data collection, processing, storage, and dissemination processes, as well as enhancing the efficiency, flexibility, and reliability of statistical systems. The study highlights how cloud-based solutions contribute to real-time data access, integration of large and heterogeneous datasets, and the automation of analytical procedures. In addition, the paper emphasizes the importance of ensuring data security, scalability, and cost efficiency when implementing cloud technologies. The findings demonstrate that the adoption of cloud-based infrastructure can significantly strengthen institutional capacity, support evidence-based decision-making, and improve the overall quality and timeliness of official statistical information in a digitalized economy.
DOI: 10.5281/zenodo.18420279
title: PROSPECTS FOR IMPLEMENTING CLOUD TECHNOLOGIES IN STATISTICAL ACTIVITIES

description:  This article examines the possibilities and practical directions for the wide and effective use of cloud technologies in statistical activities under the conditions of the emerging digital economy. Particular attention is paid to the role of cloud computing in improving data collection, processing, storage, and dissemination processes, as well as enhancing the efficiency, flexibility, and reliability of statistical systems. The study highlights how cloud-based solutions contribute to real-time data access, integration of large and heterogeneous datasets, and the automation of analytical procedures. In addition, the paper emphasizes the importance of ensuring data security, scalability, and cost efficiency when implementing cloud technologies. The findings demonstrate that the adoption of cloud-based infrastructure can significantly strengthen institutional capacity, support evidence-based decision-making, and improve the overall quality and timeliness of official statistical information in a digitalized economy.
DOI: 10.15468/dl.wvswen
title: Occurrence Download

description: A dataset containing 421 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halpe porus"
 ]
}

 The dataset includes 421 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000610-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ke5ed8
title: Occurrence Download

description: A dataset containing 676 records in GBIF matching the query:
SELECT
 '605' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 66.79314043790278
 AND decimalLatitude &lt;= 72.77152049497572
 AND decimalLongitude &gt;= -97.19957430292631
 AND decimalLongitude &lt;= -71.84031383705663
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 676 records were derived from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000605-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25824/redu/ou3okf
title: Numerical characterization of multipath fading sums via shadowing mechanisms

description: O conjunto de códigos e figuras demonstra a validação numérica e analítica do método proposto, que introduz um mecanismo de sombreamento multiplicativo para aproximar distribuições de soma de variáveis Nakagami-m. Essa abordagem: i) Gera expressões fechadas e tratáveis para PDF e CDF; ii) Permite controle de precisão via o parâmetro 𝑚𝑠,𝑙; iii) E converge em probabilidade para a soma exata conforme 𝑚𝑠,𝑙 → ∞. Em conjunto, esses resultados confirmam o caráter inovador, eficiente e ajustável da aproximação desenvolvida.
DOI: 10.15468/dl.9axsdd
title: Occurrence Download

description: A dataset containing 1688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-119.52469 46.18480,-111.84151 46.18480,-111.84151 49.25633,-119.52469 49.25633,-119.52469 46.18480))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus occidentalis"
 ]
}

 The dataset includes 1688 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000613-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9d62e
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eigenmannia antonioi"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000611-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31194328
title: AEF SITS

description: AEF SITS<br>
DOI: 10.6084/m9.figshare.31194328.v2
title: AEF SITS

description: AEF SITS<br>