cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gn3x2f
title: Occurrence Download

description: A dataset containing 9114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Russula paludosa Britzelm., Russula pectinata Fr., Russula pelargonia Niolle)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 9114 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0326766-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3y7ydj
title: Occurrence Download

description: A dataset containing 1812 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mikania hirsutissima DC."
 ]
}

 The dataset includes 1812 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0399088-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.khe2j9
title: Occurrence Download

description: A dataset containing 919645 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachiopoda"
 ]
}

 The dataset includes 919645 records from 407 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069414-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwgntx
title: Occurrence Download

description: A dataset containing 264574 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DEU.2_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 264574 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004172-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fdzje
title: Occurrence Download

description: A dataset containing 31319 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polytrichastrum formosum (Hedw.) G.L.Sm."
 ]
}

 The dataset includes 31319 records from 196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0326810-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zx0pv5
title: Occurrence Download

description: A dataset containing 1133374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Elevation 0.0-500.0m",
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico",
 "Country is Canada",
 "Country is El Salvador",
 "Country is Belize",
 "Country is Guatemala",
 "Country is Honduras",
 "Country is Nicaragua",
 "Country is Costa Rica",
 "Country is Panama",
 "Country is Colombia",
 "Country is Ecuador"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Aves",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1133374 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012332-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cav6x2
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hoya silvatica Tsiang & P.T.Li"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024230-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcj7jz
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Heliconia beckneri R.R.Sm."
 ]
}

 The dataset includes 35 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009883-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l1j349
title: Occurrence Download

description: A dataset containing 1743652 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parus major"
 ]
}

 The dataset includes 1743652 records from 837 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012333-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.duya56
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Armeria maderensis Lowe",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 23 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009972-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7h6c53
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex gotoi Ohwi"
 ]
}

 The dataset includes 224 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092898-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kcnwn7
title: Occurrence Download

description: A dataset containing 27124797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 27124797 records from 2812 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009845-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00011475
title: Data Challenge - Quantifying the Impact of Extreme Weather on Antimicrobial Resistance using Synthetic Control Methods

description: Extreme weather events (EWE) and antimicrobial resistance (AMR) are among the most pressing global health threats. While both have increased in frequency, severity, and burden over the past decade, the impact of extreme weather on AMR remains poorly quantified. Understanding this relationship is essential for informing adaptive public health responses. 
Our objectives are to (1) quantify the causal effects of EWE on AMR across pathogens and regions, (2) identify organisms most sensitive to disruptions due to EWE, and (3) develop an interactive, user-friendly dashboard to visualize AMR-weather dynamics across space and time, supporting exploration by researchers and policymakers.
We will integrate global AMR surveillance data from Pfizer’s ATLAS dataset, Shionogi’s SIDERO-WT, and Venatorx’s GEARS alongside high-resolution climate data from, e.g., NOAA’s Storm Events Database, NASA's Disasters Database, and International Best Track Archive for Climate Stewardship database. We focus on countries and U.S. states repeatedly affected by heavy precipitation, flooding, and tropical storms, e.g., Puerto Rico, Costa Rica, the Dominican Republic, Vietnam, and the Philippines. 
We propose a quasi-experimental design based on generalized synthetic control methods. Our outcomes include proportions, incidence, and distributions of MICs among phenotypically resistant isolates. To address non-linearities and biases, outcomes will undergo appropriate transformations such as logarithmic scaling. Our primary exposure variable will be the occurrence of EWE. Time-varying covariates such as antimicrobial consumption, healthcare infrastructure, population density, economic indicators, and climate-based variables (e.g., El Niño and the Southern Oscillation index, sea surface temperatures, and atmospheric pressure anomalies) will inform the construction of synthetic controls from unaffected regions, allowing robust estimation of counterfactual AMR trajectories. This project addresses a critical gap at the intersection of climate change and infectious disease. By combining causal methods, global surveillance data, and interactive tools, we aim to generate policy-relevant insights for AMR preparedness in a changing climate.
DOI: 10.15468/dl.fyjxja
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enneacampus kaupi (Bleeker, 1863)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((43.2262 -16.9066,42.991 -16.6199,42.5693 -16.563,42.237 -16.8562,42.2373 -17.2371,42.4892 -17.5028,42.907 -17.5351,43.1823 -17.3111,43.2262 -16.9066))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051999-250525065834625/datasets/export for details.
DOI: 10.15468/dl.kuxmxn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Grammatotheca bergiana (Cham.) C.Presl",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.5808 -24.13,35.5909 -24.0715,30.5701 -24.0715,30.5701 -28.5786,32.4847 -28.5786,32.55 -28.5222,33.0346 -26.8668,32.9741 -26.7838,33.0415 -26.059,32.9304 -26.0011,32.7994 -26.1281,32.6834 -26.0015,32.813 -25.8728,32.8513 -25.7166,33.3048 -25.3731,35.1489 -24.6699,35.5808 -24.13))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052000-250525065834625/datasets/export for details.
DOI: 10.15468/dl.d7efym
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-107.64723 23.24421,-71.35277 23.24421,-71.35277 37.75579,-107.64723 37.75579,-107.64723 23.24421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Xyris drummondii Malme"
 ]
}

 The dataset includes 151 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052002-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60503/d3/qgzgnc
title: Institute of Governmental Studies (IGS) Poll, 2017-12-07

description: The Berkeley IGS Poll is a periodic survey of California public opinion on important matters of politics, public policy, and public issues. The poll, which is disseminated widely, seeks to provide a broad measure of contemporary public opinion, and to generate data for subsequent scholarly analysis. For IGS Poll press releases please visit: eScholarship IGS Poll Press Releases
DOI: 10.15468/dl.qyu7jc
title: Occurrence Download

description: A dataset containing 19881 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nyssa sylvatica Marshall"
 ]
}

 The dataset includes 19881 records from 307 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052003-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00011480
title: Data Challenge: TRACE-Ec: Transmission and Resistance Analytics for Carbapenem- and ESBL-producing E. coli

description: Antimicrobial resistance (AMR) poses a critical global health threat, with ESBL-producing Escherichia coli (ESBL-Ec) and carbapenem-resistant E. coli driving significant morbidity. Our project will leverage the Vivli AMR Register’s datasets and curated datasets to investigate AMR dissemination through a One Health approach. We hypothesize that resistance and virulence mechanisms, coupled with mobile genetic elements, fuel ESBL-Ec and carbapenem-resistant E. coli spread across human and environmental reservoirs. Our objectives are to: (1) elucidate how these mechanisms drive clonal expansion and inter-sectoral transmission; (2) identify prevalent AMR and virulence mechanisms globally; and (3) map transmission patterns and resistance trends to pinpoint key AMR drivers. To address these, we will integrate Vivli’s AMR register datasets with One Health insights from public datasets, including genomic data from NCBI and PATRIC. Advanced machine learning models will analyze resistance patterns and transmission networks, combining phenotypic and genotypic features for high-resolution insights. We will validate our findings by comparing one-health surveillance data with datasets from the AMR register, ensuring robust cross-sectoral alignment and confirming the representativeness of our findings against global trends. 
By merging Vivli’s comprehensive data with One Health and genomic insights, our project will deliver actionable strategies to combat ESBL-Ec and carbapenem-resistant E. coli. This aligns with the Vivli 2025 Data Challenge’s mission to advance AMR surveillance innovation, offering novel solutions to inform global health policies and mitigate AMR’s growing threats.
DOI: 10.15468/dl.ndduqc
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((26.0749 -26.77099,27.73124 -26.77099,27.73124 -25.71311,26.0749 -25.71311,26.0749 -26.77099))",
 "HasCoordinate is true",
 "TaxonKey is Enteromius anoplus (Weber, 1897)"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052006-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13020/erw8-zn31
title: USDA-ARS Phenocart RGB Imagery Collected in Brookings, SD in 2021

description: Data were collected from an experimental field in 2021 at the Eastern South Dakota Soil and Water Research Farm in Brookings, SD, USA (44.351 N, 96.805 W). The experiment consisted of a number of oat (Avena sativa L.) variety-by-seeding-rate treatments that were further divided into medium red clover planting treatments in a strip-block design with four replicates and a plot size of 6 m by 6 m. Oat treatments crossed variety (Reins, Natty, Sumo) and target oat population (140, 220, and 320 plants m-2) in 19 cm, drilled rows; red clover showed no responses to these oat treatments. Red clover treatments compared clover planted concurrently with oats (“underseeded”) on April 28, 2021; planted after oat harvest (“post-harvest”) on August 12, 2021; or no clover (“fallow”). Red clover was drilled at 1.25 cm depth at a rate of 8.2 kg ha-1 at a row spacing of 19 cm. An herbicide application of 210 g ha-1 sethoxydim (Poast, BASF Crop Protection, Research Triangle Park, North Carolina, USA), which selectively targets monocots, was applied on August 20, 2021, to control volunteer oats. A total of 720 RGB JPEG images were collected over six dates. The dates span the emergence of the post-harvest red clover planting to the first killing frost: August 21st, September 9th, September 29th, October 5th, October 15th, and October 25th. Images were collected by a Canon PowerShot ELPH 190 IS at a height of 2.5 m in the center of each plot using a phenotyping cart (White Conley, 2013). To mirror the simplest use by researchers and practitioners, the camera was configured in full default, automatic mode, including ISO (a standard setting for controlling image darkness) and white balance and a 74-degree horizontal field of view. One image was taken from a representative location per plot on each date.
DOI: 10.15468/dl.y326bz
title: Occurrence Download

description: A dataset containing 121278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Anas erythrorhyncha J.F.Gmelin, 1789",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 121278 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051977-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zpz4m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enneacampus kaupi (Bleeker, 1863)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((40.4338 -16.6515,40.833 -15.9401,37.1382 -15.9401,37.1382 -18.642,37.5549 -18.1303,38.5882 -17.6405,39.1071 -17.6835,39.6106 -17.1715,40.0468 -17.0272,40.4338 -16.6515))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052007-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.29341661
title: Database: <b>TOPOGRAPHIC CONSTRAINTS AND LAND USE FEEDBACKS IN SURFACE WATER DYNAMICS OF THE TAPAJÓS RIVER BASIN, BRAZILIAN AMAZON</b>

description: This dataset refers to topographic constraints and land use feedbacks affecting surface water dynamics in the Tapajós River Basin, Brazilian Amazon.
DOI: 10.6084/m9.figshare.29341661.v1
title: Database: <b>TOPOGRAPHIC CONSTRAINTS AND LAND USE FEEDBACKS IN SURFACE WATER DYNAMICS OF THE TAPAJÓS RIVER BASIN, BRAZILIAN AMAZON</b>

description: This dataset refers to topographic constraints and land use feedbacks affecting surface water dynamics in the Tapajós River Basin, Brazilian Amazon.
DOI: 10.15468/dl.sku4wh
title: Occurrence Download

description: A dataset containing 41714 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platanus occidentalis L."
 ]
}

 The dataset includes 41714 records from 403 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052005-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.582zzn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Grammatotheca bergiana (Cham.) C.Presl",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((31.8862 -21.3285,30.5701 -20.3186,30.5701 -24.0715,35.5909 -24.0715,35.6007 -24.0157,35.6007 -23.8125,35.4969 -23.7035,35.6007 -23.165,35.6007 -22.9702,35.227 -22.2482,34.6862 -21.6944,34.013 -21.3095,33.5 -21.1593,32.9675 -21.1092,32.4352 -21.1612,31.8862 -21.3285))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052008-250525065834625/datasets/export for details.
DOI: 10.15468/dl.66x5uy
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ashmeadiella stenognatha Michener, 1939"
 ]
}

 The dataset includes 28 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052009-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.az6bea
title: Occurrence Download

description: A dataset containing 8782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus coccinea Münchh."
 ]
}

 The dataset includes 8782 records from 293 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052012-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5zc7s68q
title: MassIVE MSV000098238 - Fecal butyrate and deoxycholic acid quantitation for rapid assessment of the gut microbiome
title: Datasets to accompany the manuscript "Fecal butyrate and deoxycholic acid quantitation for rapid assessment of the gut microbiome" Michael W. Mullowney, Angelica Moran, Antonio Hernandez, Mary McMillin, Amber R. Rose, David Moran, Jessica Little, Ann B. Nguyen, Bhakti K. Patel, Christopher J. Lehmann, Matthew A. Odenwald, Eric G. Pamer, Kiang-Teck J. Yeo, Ashley M. Sidebottom.
DOI: 10.15468/dl.rxtd67
title: Occurrence Download

description: A dataset containing 2046 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Campostoma ornatum Girard, 1856"
 ]
}

 The dataset includes 2046 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052010-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.