cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vuu5wd
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hyoscyamus pusillus L."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000418-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4gnpt
title: Occurrence Download

description: A dataset containing 397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachystegia floribunda Benth.",
 "Continent is Africa"
 ]
}

 The dataset includes 397 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000419-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6dwypy
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is ZFMK Myriapoda collection",
 "Country is Croatia"
 ]
}

 The dataset includes 43 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000420-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14045908
title: Paleoecological Analysis in R

description: This is a public repo that can be used to learn how to conduct a paleoecological analysis in R. The project methods described here are formally reviewed and cited in the following paper.Bosch, JL., Álvarez-Manzaneda, I., Smol, J.P. et al. Blending census and paleolimnological data allows for tracking the establishment and growth of a major gannet colony over several centuries. Sci Rep 14, 20462 (2024). https://doi.org/10.1038/s41598-024-69860-z
DOI: 10.5281/zenodo.14045909
title: Paleoecological Analysis in R

description: This is a public repo that can be used to learn how to conduct a paleoecological analysis in R. The project methods described here are formally reviewed and cited in the following paper.Bosch, JL., Álvarez-Manzaneda, I., Smol, J.P. et al. Blending census and paleolimnological data allows for tracking the establishment and growth of a major gannet colony over several centuries. Sci Rep 14, 20462 (2024). https://doi.org/10.1038/s41598-024-69860-z
DOI: 10.15468/dl.cd3czj
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is ZFMK Scorpiones collection",
 "Country is Croatia"
 ]
}

 The dataset includes 44 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000421-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xb7n92
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Zoological collection of the National Museum",
 "Country is Croatia"
 ]
}

 The dataset includes 44 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000422-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14046430
title: Epitope dataset

description: Dataset of experimentally validated epitopes targeted by neutralizing antibodies located in the SARS-CoV-2 spike protein, retrieved from IEDB (https://www.iedb.org/).
DOI: 10.5281/zenodo.14046431
title: Epitope dataset

description: Dataset of experimentally validated epitopes targeted by neutralizing antibodies located in the SARS-CoV-2 spike protein, retrieved from IEDB (https://www.iedb.org/).
DOI: 10.15468/dl.289x8y
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachystegia gossweileri Hutch. & Burtt Davy",
 "Continent is Africa"
 ]
}

 The dataset includes 180 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000423-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7eptb
title: Occurrence Download

description: A dataset containing 340 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Strophioblachia fimbricalyx Boerl."
 ]
}

 The dataset includes 340 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000424-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.588mbt
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rheum pumilum Maxim."
 ]
}

 The dataset's 1 records were derived from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000344-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqf9eg
title: Occurrence Download

description: A dataset containing 737 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachystegia longifolia Benth.",
 "Continent is Africa"
 ]
}

 The dataset includes 737 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000426-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2e9f7f
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hyoscyamus pusillus L."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000425-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8affta
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((85.97758 24.45925,86.01693 21.4197,88.52529 21.48856,88.52529 24.53794,85.97758 24.45925))",
 "OccurrenceStatus is Present",
 "Year is 2000"
 ]
}

 The dataset includes 116 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000427-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48329/qfkt-kb64
title: CPRD Aurum December 2024

description: The CPRD Aurum database contains longitudinal routinely-collected electronic health records (EHR data) from UK primary care practices using EMIS Web® general practice patient management software. The database captures information on demographic characteristics; diagnoses and symptoms; drug exposures; vaccination history; laboratory tests; and referrals to hospital and specialist care. Access to anonymised data from CPRD is subject to a full licence agreement containing detailed terms and conditions of use. Anonymised patient datasets can be extracted for researchers against specific study specifications, following protocol approval. Further information is available at https://www.cprd.com/data-access.
DOI: 10.15468/dl.hppfp6
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachystegia russelliae I.M.Johnst.",
 "Continent is Africa"
 ]
}

 The dataset includes 90 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000428-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13293838
title: Old world fruit bat body mass: bat-body-masses.txt.gz
DOI: 10.15468/dl.q4yak2
title: Occurrence Download

description: A dataset containing 4938 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachystegia spiciformis Benth.",
 "Continent is Africa"
 ]
}

 The dataset includes 4938 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000429-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vdq5e5
title: Occurrence Download

description: A dataset listing the 92 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON Z((-76.96306 0.65039 0,-76.9617 0.64989 0,-76.96147 0.65002 0,-76.96062 0.65009 0,-76.96028 0.65023 0,-76.96024 0.65052 0,-76.96013 0.65098 0,-76.96016 0.6515 0,-76.9595 0.65283 0,-76.95884 0.65426 0,-76.95874 0.65522 0,-76.95867 0.65556 0,-76.95916 0.6555 0,-76.95955 0.65527 0,-76.96022 0.65511 0,-76.96118 0.65439 0,-76.96154 0.6543 0,-76.96154 0.65421 0,-76.96146 0.65417 0,-76.96141 0.65407 0,-76.96146 0.65401 0,-76.96156 0.65396 0,-76.96164 0.65393 0,-76.96174 0.65388 0,-76.96178 0.65385 0,-76.96192 0.65361 0,-76.96192 0.65305 0,-76.96201 0.65265 0,-76.96214 0.65233 0,-76.96273 0.6518 0,-76.96356 0.65134 0,-76.96358 0.65126 0,-76.96354 0.6512 0,-76.96332 0.65075 0,-76.96319 0.65054 0,-76.96306 0.65039 0))",
 "Geometry POLYGON((-76.96682 0.64578,-76.95293 0.64578,-76.95293 0.65926,-76.96682 0.65926,-76.96682 0.64578))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 92 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000369-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfpa53
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brackenridgea arenaria (De Wild. & T.Durand) N.Robson",
 "Continent is Africa"
 ]
}

 The dataset includes 249 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000430-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83xw3m
title: Occurrence Download

description: A dataset containing 6258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is France",
 "TaxonKey is Saxicola rubetra (Linnaeus, 1758)"
 ]
}

 The dataset includes 6258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000431-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14046365
title: Novel formulations for developing fresh hybrid cheese analogues utilizing fungal-fermented brewery side-stream flours

description: Datasets  corresponding to the main and supplementary material of the research article "Novel formulations for developing fresh hybrid cheese analogues utilizing fungal-fermented brewery side-stream flours ". This research paper was a result of a scientific project which was  part of the European Union's HORIZON 2020 with the acronym SMARTPROTEIN.
DOI: 10.5281/zenodo.14046366
title: Novel formulations for developing fresh hybrid cheese analogues utilizing fungal-fermented brewery side-stream flours

description: Datasets  corresponding to the main and supplementary material of the research article "Novel formulations for developing fresh hybrid cheese analogues utilizing fungal-fermented brewery side-stream flours ". This research paper was a result of a scientific project which was  part of the European Union's HORIZON 2020 with the acronym SMARTPROTEIN.
DOI: 10.15468/dl.dhr6st
title: Occurrence Download

description: A dataset containing 477995 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Insecta",
 "Year 2000-2021"
 ]
}

 The dataset includes 477995 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000361-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5258/soton/d3285
title: Dataset in support of the thesis 'Impact of physiology, ecology, and trait trade-offs on marine plankton communities and the carbon cycle'

description: This dataset contains: 18 files

Chapter 2 - Gibbs et al 2020 model and tests.rar (1 rar file)
Chapter 2 - Results.7z (5 7z files)
Chapter 3-6 Plots.rar (1 rar file)
Chapter 4-6 - EcoGEnIE simulation results.7z (9 7z files)
Thesis Tables.rar (1 rar file)
Appendix_Mixotrophy_Rstar_Model.rar (1 rar file)
DOI: 10.15468/dl.krqk9j
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bulbophyllum josephi (Kuntze) Summerh.",
 "Continent is Africa"
 ]
}

 The dataset includes 214 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000432-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yt84b5
title: Occurrence Download

description: A dataset containing 940959 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachiopoda"
 ]
}

 The dataset includes 940959 records from 512 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000297-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bv72hz
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bulbostylis cardiocarpoides Cherm.",
 "Continent is Africa"
 ]
}

 The dataset includes 152 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000433-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8zpwg
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bulbostylis cylindrica C.B.Clarke",
 "Continent is Africa"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000435-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27620280
title: Anthropogenic drivers of small island effects in urban remnant woody plants

description: This research explores the influence of the Small Island Effect (SIE) in urban remnant vegetation patches in Qingdao, China, with a focus on how this phenomenon varies between woody plants (trees and shrubs) and herbaceous plants. We identified area thresholds for SIE and analyzed the driving environmental factors behind it.Specifically, we detected the SIE in woody plants, with distinct area thresholds for shrubs (11.91 ha) and trees (6.38 ha), but no such effect for herbaceous plants. Our results also highlight key differences in the drivers of SIE between shrubs and trees, which could inform more effective, species-specific conservation strategies. The practical implications of our research underscore the need for targeted efforts to enhance ecological resilience and preserve biodiversity in fragmented urban landscapes.
DOI: 10.6084/m9.figshare.27620280.v1
title: Anthropogenic drivers of small island effects in urban remnant woody plants

description: This research explores the influence of the Small Island Effect (SIE) in urban remnant vegetation patches in Qingdao, China, with a focus on how this phenomenon varies between woody plants (trees and shrubs) and herbaceous plants. We identified area thresholds for SIE and analyzed the driving environmental factors behind it.Specifically, we detected the SIE in woody plants, with distinct area thresholds for shrubs (11.91 ha) and trees (6.38 ha), but no such effect for herbaceous plants. Our results also highlight key differences in the drivers of SIE between shrubs and trees, which could inform more effective, species-specific conservation strategies. The practical implications of our research underscore the need for targeted efforts to enhance ecological resilience and preserve biodiversity in fragmented urban landscapes.
DOI: 10.15468/dl.a6b2ns
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Codiocarpus andamanicus (Kurz) R.A.Howard"
 ]
}

 The dataset includes 55 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007790-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kd6gm
title: Occurrence Download

description: A dataset containing 56 records in GBIF matching the query:
SELECT "year", COUNT(*) as RecordsCount 
 FROM occurrence
 WHERE "year" &gt;= 1970 
 AND level0gid = 'ISL'
 AND countrycode = 'IS'
 AND (kingdom = 'Plantae' OR kingdom = 'Animalia') 
 AND (basisOfRecord = 'OBSERVATION' OR basisOfRecord = 'LIVING_SPECIMEN' OR basisOfRecord = 'MATERIAL_SAMPLE' OR basisOfRecord = 'HUMAN_OBSERVATION' OR basisOfRecord = 'MACHINE_OBSERVATION' OR basisOfRecord = 'OCCURRENCE')
 AND occurrenceStatus = 'PRESENT' 
 AND decimalLongitude IS NOT NULL 
 AND decimalLatitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') 
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') 
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') 
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') 
 GROUP BY "year"
 ORDER BY "year"

 The dataset's 56 records were derived from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014824-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2f9w4h
title: Occurrence Download

description: A dataset containing 480 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Salvia splendens)"
 ]
}

 The dataset includes 480 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014864-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gsxt7e
title: Occurrence Download

description: A dataset containing 5058 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geum macrophyllum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5058 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014866-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jnfyb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geum macrophyllum",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014867-250920141307145/datasets/export for details.
DOI: 10.15468/dl.7d8e6e
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geum macrophyllum",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 47 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014868-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12730817
title: Test dataset and docker volume for omero-quay

description: This is a minimal dataset to test [omero-quay](https://gitlab.in2p3.fr/fbi-data/omero-quay)

See omero-quay documentation and tests for usage
DOI: 10.5281/zenodo.17192747
title: Test dataset and docker volume for omero-quay

description: This is a minimal dataset to test [omero-quay](https://gitlab.in2p3.fr/fbi-data/omero-quay)

See omero-quay documentation and tests for usage
DOI: 10.6084/m9.figshare.30061507
title: cellular Binder Trap Enrichment (cBTE)

description: DELs in cells: mRNA encoding the target fused to a small protein, the Prey is injected into <i>Xenopus</i> oocytes. After expression, library and Bait DNA is injected into the cell for binding. Then, the cell is lysed, the contents diluted, oil and surfactant added, and an emulsion formed. Bound library members and Bait will be trapped together in the droplets in the emulsion, whereas unbound library members will only be trapped together with Bait by chance. The binding event is then encoded by ligation of the Bait DNA to the library DNA, and subsequently, the ligated DNA is sequenced, allowing identification of library molecules binding the target.
DOI: 10.6084/m9.figshare.30061507.v1
title: cellular Binder Trap Enrichment (cBTE)

description: DELs in cells: mRNA encoding the target fused to a small protein, the Prey is injected into <i>Xenopus</i> oocytes. After expression, library and Bait DNA is injected into the cell for binding. Then, the cell is lysed, the contents diluted, oil and surfactant added, and an emulsion formed. Bound library members and Bait will be trapped together in the droplets in the emulsion, whereas unbound library members will only be trapped together with Bait by chance. The binding event is then encoded by ligation of the Bait DNA to the library DNA, and subsequently, the ligated DNA is sequenced, allowing identification of library molecules binding the target.
DOI: 10.15468/dl.bbd43j
title: Occurrence Download

description: A dataset containing 796 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Salvia miltiorrhiza)"
 ]
}

 The dataset includes 796 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014871-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.