cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/knhvdbjv3r.2
title: SH-TBL project dataset

description: Data obtained on the cohort of patients included in the clinical study entitled "Study of TB Lesions Obtained in Therapeutical Surgery" (SH-TBL project, ClinicalTrials.gov Identifier: NCT02715271). The dataset includes: -One file ("SHTBL HQoL") including: patient information; TB reated information; data on surgery performed; and Health-Related Quality of Life data (results of the St. George's Respiratory Questionnaire (SGRQ) and the BCN Questionnaire).
DOI: 10.17632/vpy4t2bvp2.1
title: METTL1-mediated m7G modification of Arg-TCT tRNA drives oncogenic transformation. Orellana et. al
DOI: 10.17632/nwvjwccgvh.2
title: Tara Oceans - Zooplankton Abundance and Size

description: The following table is supplemental material for Brandão & Benedetti et al. (2021), entitled Macroscale patterns of oceanic zooplankton composition and size structure. It includes abundance and median Equivalent Spherical Diameter (ESD) values for the main zooplankton groups and main copepods taxa during the Tara Oceans expedition.
DOI: 10.17632/7d68zr2x8p.1
title: Supplemental Tables For: "Exploring the association between granuloma annulare and severity of type 2 diabetes in a large administrative database"

description: Supplemental Tables For: "Exploring the association between granuloma annulare and severity of type 2 diabetes in a large administrative database"
DOI: 10.17632/jmpdfkvd2j.2
title: UNG repairs APOBEC3G_2021

description: qPCR, Western blots, Deep sequencing files.
DOI: 10.17632/9kz6dnrcb6.2
title: Assessing the impact of Sars-CoV-2 on water consumption in São Paulo State, Brazil

description: The pandemic caused by Sars-CoV-2 in 2020 led to a significant change in behaviors, mainly because of the quarantine to avoid the spread of the virus. Measures affected both economic activities and citizens´ behaviors as they developed more intense hygiene habits to avoid contamination and switched to home office. These exceptional behaviors also affect the way that water is consumed and need to be fully understood to manage supply systems. Therefore, this study aims to investigate changes in residential and commercial water consumption in 31 municipalities in the State of São Paulo during the Sars-CoV-2. To do this, the expected consumption for 2020 was forecasted using the Holt-Winters Multiplicative method and compared to the data observed for the same period. In addition, we compared monthly records of new contaminations to establish a comparison between the number of infections and changes in water consumption. The results show an average difference between forecasted and observed consumption equal to + 6.23% and -18.59% for residential and commercial activities, respectively. For residential consumption, consumption per capita increased at the rate of 8.44 L.person-1.day-1. The changes in consumption seem to be a consequence of hygiene habits, social distancing and the closing of non-essential services in commerce.
DOI: 10.17632/9nnc838rwz.1
title: Ecosphere - Let’s Do the Time Warp Again: Non-linear time series matching as a tool for sequentially structured data in ecology

description: These CSV file include all of the raw data used in the article "Let’s Do the Time Warp Again: Non-linear time series matching as a tool for sequentially structured data in ecology". File: juvenile_Sr_isotope_transects_Mendeley_data.csv This file contains the strontium isotope data for each otolith in wide format. The column information is as follows: unique_otoID - unique sample ID mean - mean of 87Sr/86Sr over entire transect sd - standard deviation of 87Sr/86Sr over entire transect median - median of 87Sr/86Sr over entire transect natal_downstream - known capture location and downstream capture location. Format; First capture location --&gt; Second Capture Location columns 0 through 1152.8 - This is the number of microns from the otolith core, values are standard corrected 87Sr/886Sr File: juvenile_element_transects_Mendeley_data.csv This file contains the trace element data for each of the otolith samples in the study. Each row represents one interpolation on the ICPMS. This is in "long" format, the opposite of the strontium isotope ratio data. The column information is as follows: Order - This is the original order of the data. Time (and thus microns from the otolith core) goes from lowest to highest number within each otolith. Microns should be interpolated based on the microns from the "master" distance in the 87Sr/86Sr data. OtoID - unique sample ID, matches that of the strontium isotope data Sr_Ca - standard corrected strontium to calcium ratio in millimoles/mole Ba_Ca - standard corrected barium to calcium ratio in millimoles/mole Mn_Ca - standard corrected manganese to calcium ratio in millimoles/mole
DOI: 10.17632/j6r3rd5jhv.1
title: Cost Effectiveness of Intermediate-Risk Squamous Cell Carcinoma Treated with Mohs Micrographic Surgery Compared with Wide Local Excision

description: Mendeley Supplemental Figure 1: Tornado Diagram. This diagram shows the sensitivity of the model to a +/- 50% change in each variable. Increasing the value of a probability, cost, or effectiveness variable (red colored bar) results in a certain change in the incremental cost-effectiveness ratio (ICER, displayed on the X-axis) output of the model while decreasing the value (blue colored bar) results in an alternative change. The baseline model demonstrated that MMS was superior to WLE in both cost and effectiveness resulting in a negative ICER (WLE was dominated). The model’s ICER output was most sensitive to the probability of NR after WLE (first row in the diagram). However, as discussed in the manuscript, a 50% (or even 100%) reduction in the variable from 3.97% to 1.99% (or 3.97% to 0.00%) would not result in WLE being cost-effective; a value of 1.99% results in an ICER of around $0, so costs could be equivalent but there is increased effectiveness with MMS. If one were to test extreme alterations in the variables, the X-axis could be expanded to the right to include $50,000 (the willingness to pay threshold for our model). This point would be where one would consider whether the proposed intervention (MMS) was worth paying for. However, we did not encounter this point of equivalence during sensitivity analysis.
DOI: 10.17632/jr3mj4yhxw.1
title: Instances used in 'Design of a combined pneumatic and door-to-door waste collection system'

description: These instances were used for the computations in the master thesis 'Design of a combined pneumatic and door-to-door waste collection system' by Fechner. They are modifications of CVRP-instances found in the literature. For a description of the structuring of the folder, please refer to the file 'General_Comments_and_Sources.txt'. This file also lists all the sources used for these instances. Each subfolder, that contains an instance set, includes a description of the structure of the instances found in that subfolder. The master thesis was written at the University of Vienna.
DOI: 10.6084/m9.figshare.14922699
title: Rickettsiales: potential effector domains searches

description: results of hmmer searches of pfam domains often associated with Rickettsiales effector proteins (ankyrin, TPR, LRR) or the Xanthomonas bacteria-killing T4SS effectors (PGBD, Pedtidase).<br>
DOI: 10.6084/m9.figshare.14899134
title: Rickettsiales: cluster sequence files, alignments and trees

description: protein family clusters generated for Rickettsiales and other alphaproteobacteria. Based on the annotation with alphaNOGs and de-novo clustering using Silix respectively. alignments and trees were reconstrcuted for clusters with at least 4 member sequences. these were used as input for gene tree-species tree reconciliation in ALEml_undated<br>
DOI: 10.6084/m9.figshare.14922696
title: Rickettsiales: gene tree-species tree reconciliation results

description: Results files from ALEml_undated of the alphaproteobacterial protein family trees with the species tree. events.txt contains all the raw vaues for all protein families.<br>
DOI: 10.6084/m9.figshare.14922696.v1
title: Rickettsiales: gene tree-species tree reconciliation results

description: Results files from ALEml_undated of the alphaproteobacterial protein family trees with the species tree. events.txt contains all the raw vaues for all protein families.<br>
DOI: 10.17632/6ftsfyfpbz.1
title: Modified_HNGD_Validation

description: This folder contains the data and scripts required to plot the figures of the paper “Predicting the hydride rim by improving the solubility limits in the Hydride Nucleation-Growth-Dissolution (HNGD) model.” The Excel file contains (i) the plots showing the impact of the new parameters g and delta, (ii) the plot of the Zircaloy with inner Zr liner simulation, and (iii) the plots from “Section 5: testing the hypotheses”. The matlab_plots folder contains the data and scripts to plot each case with the set of parameters defined in the paper. Launching the MAIN.m file will build all the plots. The analytical_solution folder contains a script to build the steady-state hydrogen distribution. The parameters can be modified in the MAIN.m file.
DOI: 10.6084/m9.figshare.14899134.v1
title: Rickettsiales: cluster sequence files, alignments and trees

description: protein family clusters generated for Rickettsiales and other alphaproteobacteria. Based on the annotation with alphaNOGs and de-novo clustering using Silix respectively. alignments and trees were reconstrcuted for clusters with at least 4 member sequences. these were used as input for gene tree-species tree reconciliation in ALEml_undated<br>
DOI: 10.6084/m9.figshare.14922699.v1
title: Rickettsiales: potential effector domains searches

description: results of hmmer searches of pfam domains often associated with Rickettsiales effector proteins (ankyrin, TPR, LRR) or the Xanthomonas bacteria-killing T4SS effectors (PGBD, Pedtidase).<br>
DOI: 10.17632/v7xh2m76tw.1
title: Predictive models of response to neoadjuvant chemotherapy in muscle-invasive bladder cancer based on nuclear morphology and tissue architecture

description: Performance evaluation of segmentation algorithm with regard to H&E, CyclinD1, Ki67, GATA3, P16, P53, P63, CK5/6, CK20, and Her2Neu.
DOI: 10.17632/847xnnb5jy.1
title: Male female student teachers' technology integration

description: This data set contains research instruments, data tabulation, and SPSS outputs about male and female student teachers' technology integration in teaching speaking skills.
DOI: 10.17632/ssft65y36t.1
title: Mass fractions of hydrocarbons by carbon chain length in the product from a simulated Fischer-Tropsch reactor in an integrated hydrothermal liquefaction, evaporation, gasification and Fischer-Tropsch synthesis process

description: Mass fractions of hydrocarbons by carbon chain length in the product from a simulated Fischer-Tropsch reactor in an integrated hydrothermal liquefaction, evaporation, gasification and Fischer-Tropsch synthesis process
DOI: 10.17632/ywx7bdzn5z.1
title: Data Base Hyperprolactinemia Sociodemographic and clinic characteristhics

description: Data Base about research Study of clinical, biochemical and pathophysiological characteristics in hypothalamic pituitary diseases
DOI: 10.17632/kyxg8rg9k8.1
title: AAV_NHP_CNS

description: The workflow of network building in Orange package
DOI: 10.17632/c6v4b5gpys.1
title: Results of National High School Graduation Exam in Vietnam in 2020-2021

description: Results of National High School Graduation Exam in Vietnam in 2020-2021
DOI: 10.17632/vfv84r97jw.1
title: Small Medium Entreprises Research Data (1998-2020)

description: The Small Medium Entreprises in Indonesia research and publication dataset, which was indexed by Scopus from 1998 to 2020. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.17632/9fwxwjfn9p.5
title: Diagnostic network meta-analysis / network meta-regression for Biomarkers of Sepsis

description: Diagnostic network meta-analysis / network meta-regression for Biomarkers of Sepsis
DOI: 10.17632/rs6ysvgw8h.1
title: Insights into the evolution and hypoglycemic metabolite biosynthesis of autotetraploid Cyclocarya paliurus by combining genomic, transcriptomic and metabolomic analyses

description: C. paliurus is an endangered medicinal plant of the genus Cyclocarya within the family Juglandaceae, and its leaves have been widely used for the development of healthy tea and medicine with a variety of pharmacologically bioactive components. This is the first report of an ~634.90-Mb chromosome-level haploid genome assembly of heterozygous autotetraploid C. paliurus (2n=4x=64 chromosomes) with 46,292 protein-coding genes; 95.78% (contigs) of the assembled genome was successfully anchored to 16 chromosomes. The estimated results for contig N50 (34.21 Mb), BUSCO (91.0%) and EST (95.52%) showed a high continuity and integrity of the assembled haploid genome. The phylogenetic tree showed that C. paliurus had a close relationship to J. sigillata, J. regia and C. illinoinensis and phylogenetically diverged from the common ancestor (Juglandales) approximately 24 million years ago (Mya). Comparative genome analysis indicated that only one recent WGD event in C. paliurus was distinct from the juglandoid WGD event and occurred from 3.22-4.86 Mya. Whole transcriptome analysis showed that most differentially expressed (DE)-RNAs were significantly enriched in plant hormone signal transduction and plant-pathogen interactions. A total of 626 differentially accumulated metabolites (DAMs) and 6,138 DE-mRNAs were identified and were mainly involved in steroid, flavonoid and polysaccharide biosynthesis in C. paliurus leaves. Metabolomics and transcriptomics data showed that most of the genes related to hypoglycemic metabolite biosynthesis in the 10M-YL and 10M-ML groups were significantly higher than those in the 10M-OL group, including CpHMGS, CpMVK, CpMVD, CpCMK, CpDXS, CpC4Hs, CpCHIs, CpF3Hs, CpF3’5’H, CpDFRs, CpANS, CpFK, CpmanA, CpmanB, CpRHM, and CpUXE, suggesting a strong correlation between the DAMs and DEGs in hypoglycemic metabolite biosynthesis. These findings can help improve the understanding of the molecular mechanism of hypoglycemic metabolites in leaves with different maturities in C. paliurus and provide a theoretical basis and technical support for the development and utilization of C. paliurus.
DOI: 10.17632/mrt4d6s5bm.1
title: datasets

description: Site#1 and site#2 refer to two wind speed datasets adopted in the research paper " A multi-layer extreme learning machine refined by sparrow search algorithm and weighted mean filter for short-term multi-step wind speed forecasting". Site#1 contains 1000 hourly wind speed data samples in Inner Mongolia Autonomous Region, China. Whereas site#2 contains 1000 hourly wind speed data samples in Mauna Loa, Hawaii, US.
DOI: 10.17632/nrs7c8v4m2.1
title: Firms’ Bond Market Access and Impact on Bank Borrowing Costs

description: This dataset combines data from three sources (a) syndicated loan transactions and loan characteristics (b) bond issuance (c) company information. The transaction data (a) and (b) are matched into (c) using a company level identifier. The data covers a period from 2000 to 2020. The data allows researchers to test the interactions between bond issuances and yields viz loans and loan spreads.
DOI: 10.17632/9tft3vz5tm.1
title: Supplementary data: A Deep Learning and XGBoost-based Method for Predicting Protein-protein Interaction Sites

description: local_feature_training_set.csv: Preprocessing data of feature extractor contains 65869 rows and 344 columns, and rows represent the number of samples , the first 343 columns represent feature and the last column represent label local_feature_testing_set.csv: Preprocessing data of feature extractor contains 11791 rows and 344 columns, and rows represent the number of samples , the first 343 columns represent feature and the last column represent label global&local_feature_training_set.csv: Preprocessing data of feature extractor contains 65869 rows and 1028 columns, and rows represent the number of samples , the first 1027 columns represent feature and the last column represent label global&local_feature_testing_set.csv: Preprocessing data of feature extractor contains 11791 rows and 1028 columns, and rows represent the number of samples , the first 1027 columns represent feature and the last column represent label
DOI: 10.17632/9w8znchkt6.1
title: "Data for: MAC: A Proposal for Consistent Actuarial Interest Rates in Pension Funds" published by RAC-Revista de Administração Contemporânea

description: Planilhas e código em R que serviram de base para as análises estatísticas na pesquisa que originou o artigo "MAC - Uma Proposta para Metas Atuariais Consistentes em Fundos de Pensão". Grande parte das informações relativas às EFPCs foram coletadas no site de Acesso à Informação da PREVIC, localizado em https://www.gov.br/economia/pt-br/orgaos/entidades-vinculadas/autarquias/previc/acesso-a-informacao/dados-abertos/demonstrativos-atuariais, com a colaboração do discente, hoje atuário MIBA 3461, Douglas Gomes Ferreira. As informações coletadas são dados secundários disponíveis em sites do governo e nos sites da EFPC.
DOI: 10.6084/m9.figshare.14899131
title: Rickettsiales: T4SS subunit trees

description: Phylogenetic trees of Type 4 secretion system subunits. Rickettsiales sequences were used to search the corresponding EggNOG clusters and trees were reconstructed using the Rickettsiales taxa and the EggNOG references. In all trees, deep-branching marine Rickettsiales are monophyletic with the classical Rickettsiales, showing that the T4SS system is an ancient feature of the clade.<br>
DOI: 10.6084/m9.figshare.14899131.v1
title: Rickettsiales: T4SS subunit trees

description: Phylogenetic trees of Type 4 secretion system subunits. Rickettsiales sequences were used to search the corresponding EggNOG clusters and trees were reconstructed using the Rickettsiales taxa and the EggNOG references. In all trees, deep-branching marine Rickettsiales are monophyletic with the classical Rickettsiales, showing that the T4SS system is an ancient feature of the clade.<br>
DOI: 10.6084/m9.figshare.14866248.v1
title: Mapping the major quantitative trait loci of the heading date trait in Qingke barley (Hordeum vulgare L.) from the Qinghai-Tibetan Plateau via genotyping by sequencing

description: raw data<br><br>
DOI: 10.5281/zenodo.4917196
title: Ovulation suppression protects against chromosomal abnormalities in mouse eggs at advanced maternal age

description: Scripts to analyze snHi-C data related to the manuscript: Ovulation suppression protects against chromosomal abnormalities in mouse eggs at advanced maternal age
DOI: 10.5281/zenodo.4917195
title: Ovulation suppression protects against chromosomal abnormalities in mouse eggs at advanced maternal age

description: Scripts to analyze snHi-C data related to the manuscript: Ovulation suppression protects against chromosomal abnormalities in mouse eggs at advanced maternal age
DOI: 10.25919/3ce9-fz90
title: Eucalyptus melliodora (Yellow Box) data

description: Microsatellite data for Yellow Box genetic diversity and population genetic structure research
DOI: 10.25919/yatx-j702
title: Fremontodendron (Sterculiaceae)

description: AFLP data for genetic comparison between Fremontodendron decumbens and F. californicum (Sterculiaceae)
DOI: 10.6084/m9.figshare.13116926.v1
title: Extraction of carboxin and bensulfuron-methyl using cysteine-functionalized chitosan-coated magnetic nanoparticles and response surface methodology

description: In the proposed method cysteine-functionalized chitosan-coated magnetic nanoparticles were synthesized and used as an effective adsorbent for the extraction of carboxin and bensulfuron-methyl. The experiments were performed according to an orthogonal rotatable Box-Behnken design. The results showed that the limits of detection, quantification values, and linear ranges were 0.6, 2.0 µg.L<sup>−1</sup>, and 2–1000 µgL<sup>−1</sup> for carboxin, and 0.3, 1.0 µgL<sup>−1</sup>, and 1–1000 µgL<sup>−1</sup> for bensulfuron-methyl. The proposed method was applied to spiked real samples. The percentage of recovery values (91.53%-98.46%) with low relative standard deviation (≤4.6%) demonstrated excellent repeatability and applicability of this adsorbent to water samples. <b>Abbreviations:</b> Aminopropyl triethoxysilane, APTES; Box-Behnken design, BBD; Central composite design, CCD; Chitosan, CS; Double-distilled deionized water, DDW; Extraction recovery, ER; Fourier transform infrared, FT-IR; Liquid-Liquid extraction, LLE; Liquid-Solid extraction, LSE; Maximum residue limits, MRL; Magnetic dispersive-solid-phase extraction, MD-SPE; Magnetic nanoparticles, MNPs; Multiple linear regression, MLR; Response surface methodology, RSM; Solid-phase extraction, SPE; Thermal gravimetric analyses, TGA; Tetraethyl orthosilicate, TEOS; X-ray diffraction, XRD.
DOI: 10.6084/m9.figshare.13116926
title: Extraction of carboxin and bensulfuron-methyl using cysteine-functionalized chitosan-coated magnetic nanoparticles and response surface methodology

description: In the proposed method cysteine-functionalized chitosan-coated magnetic nanoparticles were synthesized and used as an effective adsorbent for the extraction of carboxin and bensulfuron-methyl. The experiments were performed according to an orthogonal rotatable Box-Behnken design. The results showed that the limits of detection, quantification values, and linear ranges were 0.6, 2.0 µg.L<sup>−1</sup>, and 2–1000 µgL<sup>−1</sup> for carboxin, and 0.3, 1.0 µgL<sup>−1</sup>, and 1–1000 µgL<sup>−1</sup> for bensulfuron-methyl. The proposed method was applied to spiked real samples. The percentage of recovery values (91.53%-98.46%) with low relative standard deviation (≤4.6%) demonstrated excellent repeatability and applicability of this adsorbent to water samples. <b>Abbreviations:</b> Aminopropyl triethoxysilane, APTES; Box-Behnken design, BBD; Central composite design, CCD; Chitosan, CS; Double-distilled deionized water, DDW; Extraction recovery, ER; Fourier transform infrared, FT-IR; Liquid-Liquid extraction, LLE; Liquid-Solid extraction, LSE; Maximum residue limits, MRL; Magnetic dispersive-solid-phase extraction, MD-SPE; Magnetic nanoparticles, MNPs; Multiple linear regression, MLR; Response surface methodology, RSM; Solid-phase extraction, SPE; Thermal gravimetric analyses, TGA; Tetraethyl orthosilicate, TEOS; X-ray diffraction, XRD.
DOI: 10.6084/m9.figshare.15059430.v1
title: NMR_raw data.zip

description: NMR data sets.
DOI: 10.6084/m9.figshare.15059430
title: NMR_raw data.zip

description: NMR data sets.
DOI: 10.6084/m9.figshare.15059430.v2
title: NMR_raw data.zip

description: NMR data sets.