cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7414643
title: Additional file 2: of Epithelial-specific histone modification of the miR-96/182 locus targeting AMAP1 mRNA predisposes p53 to suppress cell invasion in epithelial cells

description: Figure S2. Epigenome status of each miRNA. The ENCODE data of miRNAs in Fig. 2a are shown by the UCSC Genome Browser. Definitions of the colors are given at the top of Fig. 3c. (ZIP 21369â kb)
DOI: 10.6084/m9.figshare.7414643.v1
title: Additional file 2: of Epithelial-specific histone modification of the miR-96/182 locus targeting AMAP1 mRNA predisposes p53 to suppress cell invasion in epithelial cells

description: Figure S2. Epigenome status of each miRNA. The ENCODE data of miRNAs in Fig. 2a are shown by the UCSC Genome Browser. Definitions of the colors are given at the top of Fig. 3c. (ZIP 21369â kb)
DOI: 10.7284/108195
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1210A using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414625
title: Additional file 4: of Effects of pathogenic CNVs on physical traits in participants of the UK Biobank

description: Table S2. List of the 92 CNVs considered for analysis. “Significant (Coe, 2014)” indicates the CNVs that have been shown to be significantly associated with developmental delay, autism spectrum disorders or multiple congenital anomalies in that study [23]. “Genomic disorder (Dittwald et al, 2013)” indicates the CNVs included in the study by Dittwald et al. [32] as implicated in genomic disorders or clinically significant phenotypes. “Unreliable” indicates those CNVs (mostly telomeric) that produced calls predominantly on arrays that failed QC. This indicates that they could generate false-positive calls even on arrays that pass QC and therefore were excluded from analysis. “Rare” CNVs are those with
DOI: 10.7284/108151
title: Anemometer data collected during research cruise OC1210A using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414625.v1
title: Additional file 4: of Effects of pathogenic CNVs on physical traits in participants of the UK Biobank

description: Table S2. List of the 92 CNVs considered for analysis. “Significant (Coe, 2014)” indicates the CNVs that have been shown to be significantly associated with developmental delay, autism spectrum disorders or multiple congenital anomalies in that study [23]. “Genomic disorder (Dittwald et al, 2013)” indicates the CNVs included in the study by Dittwald et al. [32] as implicated in genomic disorders or clinically significant phenotypes. “Unreliable” indicates those CNVs (mostly telomeric) that produced calls predominantly on arrays that failed QC. This indicates that they could generate false-positive calls even on arrays that pass QC and therefore were excluded from analysis. “Rare” CNVs are those with
DOI: 10.7284/111567
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1210A using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414601
title: Additional file 3: of Effects of pathogenic CNVs on physical traits in participants of the UK Biobank

description: Table S3. Comparison of all associations before and after the exclusion of 1179 people with a neurodevelopmental diagnosis: schizophrenia, autism and “mental retardation”. “new” refers to results obtained after the exclusion of these people. The scatter plot compares the normalised z-score values form linear regression analysis before and after the exclusions. The few outliers are generated from three CNVs: 3q29 deletions, Potocki-Lupski Syndrome duplications and 22q11.2 deletions where a disproportionate number of carriers had neurodevelopmental disorders (details in Discussion). (XLSX 14 kb) (XLSX 197 kb)
DOI: 10.7284/108153
title: Fluorometer data collected during research cruise OC1210A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414601.v1
title: Additional file 3: of Effects of pathogenic CNVs on physical traits in participants of the UK Biobank

description: Table S3. Comparison of all associations before and after the exclusion of 1179 people with a neurodevelopmental diagnosis: schizophrenia, autism and “mental retardation”. “new” refers to results obtained after the exclusion of these people. The scatter plot compares the normalised z-score values form linear regression analysis before and after the exclusions. The few outliers are generated from three CNVs: 3q29 deletions, Potocki-Lupski Syndrome duplications and 22q11.2 deletions where a disproportionate number of carriers had neurodevelopmental disorders (details in Discussion). (XLSX 14 kb) (XLSX 197 kb)
DOI: 10.7284/108147
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1210A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108154
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1210A using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414568
title: Additional file 1: of Effects of pathogenic CNVs on physical traits in participants of the UK Biobank

description: Table S1. All results from linear regression analysis. Separate tables are provided for each CNV. (DOCX 1040 kb) (XLSX 335 kb)
DOI: 10.7284/108155
title: Gyrocompass data collected during research cruise OC1210A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414568.v1
title: Additional file 1: of Effects of pathogenic CNVs on physical traits in participants of the UK Biobank

description: Table S1. All results from linear regression analysis. Separate tables are provided for each CNV. (DOCX 1040 kb) (XLSX 335 kb)
DOI: 10.7284/108157
title: Hygrometer data collected during research cruise OC1210A using a Vaisala HMT300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108156
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1210A using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108158
title: Radiometer data collected during research cruise OC1210A using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108159
title: Radiometer data collected during research cruise OC1210A using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108160
title: Rain Gauge data collected during research cruise OC1210A using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108150
title: Singlebeam Echosounder data collected during research cruise OC1210A using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108152
title: Singlebeam Echosounder data collected during research cruise OC1210A using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108162
title: Water Temperature data collected during research cruise OC1210A using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108163
title: Water Temperature data collected during research cruise OC1210A using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414484
title: Additional file 3: of Genome-wide comparison of Corynebacterium diphtheriae isolates from Australia identifies differences in the Pan-genomes between respiratory and cutaneous strains

description: Listed genes from pan-genome analysis. (XLSX 13 kb)
DOI: 10.7284/108164
title: Transmissometer data collected during research cruise OC1210A using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414484.v1
title: Additional file 3: of Genome-wide comparison of Corynebacterium diphtheriae isolates from Australia identifies differences in the Pan-genomes between respiratory and cutaneous strains

description: Listed genes from pan-genome analysis. (XLSX 13 kb)
DOI: 10.7284/108165
title: TSG (Thermosalinograph) data collected during research cruise OC1210A using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108196
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1210B using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414463
title: Additional file 2: of Genome-wide comparison of Corynebacterium diphtheriae isolates from Australia identifies differences in the Pan-genomes between respiratory and cutaneous strains

description: Genes associated with traits, LHD, respiratory infection and cutaneous infection. (XLSX 59 kb)
DOI: 10.7284/108170
title: Anemometer data collected during research cruise OC1210B using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414463.v1
title: Additional file 2: of Genome-wide comparison of Corynebacterium diphtheriae isolates from Australia identifies differences in the Pan-genomes between respiratory and cutaneous strains

description: Genes associated with traits, LHD, respiratory infection and cutaneous infection. (XLSX 59 kb)
DOI: 10.7284/109579
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1210B using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414448
title: Additional file 5: of Corn dried distillers grains with solubles (cDDGS) in the diet of pigs change the expression of adipose genes that are potential therapeutic targets in metabolic and cardiovascular diseases

description: Table S3. Characteristics of samples used in the study. (XLSX 10 kb)
DOI: 10.7284/108172
title: Fluorometer data collected during research cruise OC1210B using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414448.v1
title: Additional file 5: of Corn dried distillers grains with solubles (cDDGS) in the diet of pigs change the expression of adipose genes that are potential therapeutic targets in metabolic and cardiovascular diseases

description: Table S3. Characteristics of samples used in the study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7414439
title: Additional file 1: of Genome-wide comparison of Corynebacterium diphtheriae isolates from Australia identifies differences in the Pan-genomes between respiratory and cutaneous strains

description: The MLST allele designations and assembly statistics for C. diphtheriae genomes. (XLSX 17 kb)
DOI: 10.7284/108166
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1210B using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414433
title: Additional file 1: of Soluble epoxide hydrolase derived lipid mediators are elevated in bronchoalveolar lavage fluid from patients with sarcoidosis: a cross-sectional study

description: Data S1. Summary of data used in the analysis. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.7414439.v1
title: Additional file 1: of Genome-wide comparison of Corynebacterium diphtheriae isolates from Australia identifies differences in the Pan-genomes between respiratory and cutaneous strains

description: The MLST allele designations and assembly statistics for C. diphtheriae genomes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7414433.v1
title: Additional file 1: of Soluble epoxide hydrolase derived lipid mediators are elevated in bronchoalveolar lavage fluid from patients with sarcoidosis: a cross-sectional study

description: Data S1. Summary of data used in the analysis. (XLSX 31 kb)
DOI: 10.7284/108173
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1210B using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414421
title: Additional file 4: of Corn dried distillers grains with solubles (cDDGS) in the diet of pigs change the expression of adipose genes that are potential therapeutic targets in metabolic and cardiovascular diseases

description: Table S4. Results of the identification of DEGs between groups I and II by DESeq 2 software and functional analysis with String software of identified DEGs after excluding one sample to obtain sex balance among groups. (XLSX 6539 kb)
DOI: 10.7284/108174
title: Gyrocompass data collected during research cruise OC1210B using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414421.v1
title: Additional file 4: of Corn dried distillers grains with solubles (cDDGS) in the diet of pigs change the expression of adipose genes that are potential therapeutic targets in metabolic and cardiovascular diseases

description: Table S4. Results of the identification of DEGs between groups I and II by DESeq 2 software and functional analysis with String software of identified DEGs after excluding one sample to obtain sex balance among groups. (XLSX 6539 kb)
DOI: 10.7284/108176
title: Hygrometer data collected during research cruise OC1210B using a Vaisala HMT300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414403
title: Additional file 2: of Corn dried distillers grains with solubles (cDDGS) in the diet of pigs change the expression of adipose genes that are potential therapeutic targets in metabolic and cardiovascular diseases

description: Table S2. List of all enrichments identified by String software among DEGs in (-cDDGS+rapessed oil) vs (+cDDGS+rapeseed oil) comparison. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.7414403.v1
title: Additional file 2: of Corn dried distillers grains with solubles (cDDGS) in the diet of pigs change the expression of adipose genes that are potential therapeutic targets in metabolic and cardiovascular diseases

description: Table S2. List of all enrichments identified by String software among DEGs in (-cDDGS+rapessed oil) vs (+cDDGS+rapeseed oil) comparison. (XLSX 58 kb)
DOI: 10.7284/108175
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1210B using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414388
title: Additional file 1: of Corn dried distillers grains with solubles (cDDGS) in the diet of pigs change the expression of adipose genes that are potential therapeutic targets in metabolic and cardiovascular diseases

description: Table S1. Results of the identification of DEGs by DESeq 2 software of all comparisons. (XLSX 98 kb)
DOI: 10.7284/108177
title: Radiometer data collected during research cruise OC1210B using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414388.v1
title: Additional file 1: of Corn dried distillers grains with solubles (cDDGS) in the diet of pigs change the expression of adipose genes that are potential therapeutic targets in metabolic and cardiovascular diseases

description: Table S1. Results of the identification of DEGs by DESeq 2 software of all comparisons. (XLSX 98 kb)
DOI: 10.7284/108178
title: Radiometer data collected during research cruise OC1210B using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108179
title: Rain Gauge data collected during research cruise OC1210B using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414373
title: Additional file 8: of Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis

description: Table S7. IGscan QC analysis for the first 1000 positions of the BRCA1 gene. An exemple of statistical analysis to show the advantage of using IGS to analysis a given genome region, BRCA 1 gene in this case. (XLSX 107 kb)
DOI: 10.6084/m9.figshare.7414373.v1
title: Additional file 8: of Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis

description: Table S7. IGscan QC analysis for the first 1000 positions of the BRCA1 gene. An exemple of statistical analysis to show the advantage of using IGS to analysis a given genome region, BRCA 1 gene in this case. (XLSX 107 kb)
DOI: 10.7284/108169
title: Singlebeam Echosounder data collected during research cruise OC1210B using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108171
title: Singlebeam Echosounder data collected during research cruise OC1210B using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414355
title: Additional file 7: of Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis

description: Table S6. List of Gene Boundaries in the Reference Genome (GRCh37). A file of chunk boundaries and the corresponding chromosome and gene of the region. (XLSX 1893 kb)
DOI: 10.6084/m9.figshare.7414355.v1
title: Additional file 7: of Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis

description: Table S6. List of Gene Boundaries in the Reference Genome (GRCh37). A file of chunk boundaries and the corresponding chromosome and gene of the region. (XLSX 1893 kb)
DOI: 10.7284/108181
title: Water Temperature data collected during research cruise OC1210B using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108182
title: Water Temperature data collected during research cruise OC1210B using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108183
title: Transmissometer data collected during research cruise OC1210B using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108184
title: TSG (Thermosalinograph) data collected during research cruise OC1210B using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109529
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1210C using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414310
title: Additional file 5: of Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis

description: Table S5. IGS Phenotype Information From the NCBI Map Viewer. Phenotype data integrated in IGS for each sample deposited herein. The data is extracted by use of the phenotype ID (key). (XLSX 350 kb)
DOI: 10.7284/109519
title: Anemometer data collected during research cruise OC1210C using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109573
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1210C using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414310.v1
title: Additional file 5: of Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis

description: Table S5. IGS Phenotype Information From the NCBI Map Viewer. Phenotype data integrated in IGS for each sample deposited herein. The data is extracted by use of the phenotype ID (key). (XLSX 350 kb)
DOI: 10.7284/109521
title: Fluorometer data collected during research cruise OC1210C using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414298
title: Additional file 1: of Polyomic tools for an emerging livestock parasite, the rumen fluke Calicophoron daubneyi; identifying shifts in rumen functionality

description: Full polyomic data. Table S1. Top C. daubneyi transcriptomic hits. Table S2. The full C. daubneyi transcriptomic hits. Table S3. BLAST searches of C. daubneyi transcripts against P. cervi. BLAST searches of C. daubneyi transcripts. Table S4. The full analysis of putative protein identifications from the excretory/secretory proteome profile of adult C. daubneyi. Table S5. The full analysis of putative proteins identified from the soluble somatic proteome profile of adult C. daubneyi. (XLSX 12697 kb)
DOI: 10.6084/m9.figshare.7414295
title: Additional file 4: of Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis

description: Table S4. List of Copy Number Variation in Disease Database (CNVD). (XLSX 1074 kb)
DOI: 10.6084/m9.figshare.7414295.v1
title: Additional file 4: of Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis

description: Table S4. List of Copy Number Variation in Disease Database (CNVD). (XLSX 1074 kb)
DOI: 10.7284/109516
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1210C using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7414286
title: Additional file 4: of DNA barcoding and molecular identification of field-collected Culicoides larvae in the Niayes area of Senegal

description: Table S2. Comparison between DNA sequences for Afrotropical Culicoides species using the Barcode Gap Analysis tools on BOLD. (XLSX 12 kb)