cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.f9gu9e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Accipitriformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-70 70,-60 70,-60 80,-70 80,-70 70))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022995-251009101135966/datasets/export for details.
DOI: 10.15468/dl.2rnbca
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trogoniformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-90 -60,-80 -60,-80 -50,-90 -50,-90 -60))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022999-251009101135966/datasets/export for details.
DOI: 10.15468/dl.6a8bjz
title: Occurrence Download

description: A dataset containing 817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Accipitriformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-10 60,0 60,0 70,-10 70,-10 60))"
 ]
}

 The dataset includes 817 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023000-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t9rwvy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trogoniformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((110 -60,120 -60,120 -50,110 -50,110 -60))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022994-251009101135966/datasets/export for details.
DOI: 10.15468/dl.ngfyk4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agelas linnaei",
 "Country is Syrian Arab Republic",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022996-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15738414
title: Variable diagnoses in cases referred for discordant thyroid function tests: focus on lymphoproliferative disorders

description: Dataset associated with the paper "Musolino A, Grifoni GFA, Rodolfi S, Andreasi M, Bulgarelli I, Fanelli F, Morelli V, Persani L, Campi I. Variable Diagnoses in Cases Referred for Discordant Thyroid Function Tests: Focus on Lymphoproliferative Disorders. Thyroid. 2025 Sep;35(9):1003-1012. doi: 10.1177/10507256251364557. Epub 2025 Jul 30. PMID: 40737226"

This set of raw data cannot be made publicly available as it includes sensitive information but might be made available to interested researchers upon reasonable request. please forward your request to i.campi@auxologico.it
DOI: 10.5281/zenodo.15738415
title: Variable diagnoses in cases referred for discordant thyroid function tests: focus on lymphoproliferative disorders

description: Dataset associated with the paper "Musolino A, Grifoni GFA, Rodolfi S, Andreasi M, Bulgarelli I, Fanelli F, Morelli V, Persani L, Campi I. Variable Diagnoses in Cases Referred for Discordant Thyroid Function Tests: Focus on Lymphoproliferative Disorders. Thyroid. 2025 Sep;35(9):1003-1012. doi: 10.1177/10507256251364557. Epub 2025 Jul 30. PMID: 40737226"

This set of raw data cannot be made publicly available as it includes sensitive information but might be made available to interested researchers upon reasonable request. please forward your request to i.campi@auxologico.it
DOI: 10.15468/dl.xv9wfn
title: Occurrence Download

description: A dataset containing 9892 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coriandrum sativum",
 "Year 1975-2024"
 ]
}

 The dataset includes 9892 records from 509 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022998-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17296300
title: GVDB Dataset - AF predictions and Foldseek databases

description: This repository contains the protein clustering datasets associated with the manuscript “Elucidating the protein interaction network of one of the largest icosahedral capsids in the virosphere" by Hela Safi, Alain Schmitt, Alwena Tollec, Lucid Belmudes, Agathe M. G. Colmant, Olivier Poirot, Sebastien Santini, Matthieu Legendre, Yohann Couté, Hugo Bisio, Chantal Abergel.

bioRxiv 2025.10.13.682015; doi: https://doi.org/10.1101/2025.10.13.682015 

 

The dataset includes :



GVDB protein sequences in fasta format: gvdb_sequences.fasta

GVDB predicted AlphaFold2 models (best model pdb): gvdb_af2_pdbs.tar.gz

For high troughput searches, GVDB foldseek database: gvdb_af2_fseekdb.tar.gz

For high troughput searches, Virome+GVDB foldseek database: viromegvdb_af2_fseekdb.tar.gzPlease note that the original Virome dataset is available from Nomburg et al., 2024 (https://doi.org/10.1038/s41586-024-07809-y) 

Virome+GVDB protein sequences in fasta format: viromegvdb_sequences.fasta

Virome+GV cluster file in tsv format: viromegv_clusters.tsv
DOI: 10.5281/zenodo.17296301
title: GVDB Dataset - AF predictions and Foldseek databases

description: This repository contains the protein clustering datasets associated with the manuscript “Elucidating the protein interaction network of one of the largest icosahedral capsids in the virosphere" by Hela Safi, Alain Schmitt, Alwena Tollec, Lucid Belmudes, Agathe M. G. Colmant, Olivier Poirot, Sebastien Santini, Matthieu Legendre, Yohann Couté, Hugo Bisio, Chantal Abergel.

bioRxiv 2025.10.13.682015; doi: https://doi.org/10.1101/2025.10.13.682015 

 

The dataset includes :



GVDB protein sequences in fasta format: gvdb_sequences.fasta

GVDB predicted AlphaFold2 models (best model pdb): gvdb_af2_pdbs.tar.gz

For high troughput searches, GVDB foldseek database: gvdb_af2_fseekdb.tar.gz

For high troughput searches, Virome+GVDB foldseek database: viromegvdb_af2_fseekdb.tar.gzPlease note that the original Virome dataset is available from Nomburg et al., 2024 (https://doi.org/10.1038/s41586-024-07809-y) 

Virome+GVDB protein sequences in fasta format: viromegvdb_sequences.fasta

Virome+GV cluster file in tsv format: viromegv_clusters.tsv
DOI: 10.5281/zenodo.17313811
title: Mimivirus co-IP Network files

description: This repository contains the interactive co-IP networks (cytoscape files) associated with the manuscript “Elucidating the protein interaction network of one of the largest icosahedral capsids in the virosphere" by Hela Safi, Alain Schmitt, Alwena Tollec, Lucid Belmudes, Agathe M. G. Colmant, Olivier Poirot, Sebastien Santini, Matthieu Legendre, Yohann Couté, Hugo Bisio, Chantal Abergel.

bioRxiv 2025.10.13.682015; doi: https://doi.org/10.1101/2025.10.13.682015 

 

The dataset includes co-IP networks with functional categories, LCA taxonomic level conservation, icosahedral shape status, and expression cluster color codes.

Requirements: Cytoscape (https://cytoscape.org/)
DOI: 10.5281/zenodo.17313812
title: Mimivirus co-IP Network files

description: This repository contains the interactive co-IP networks (cytoscape files) associated with the manuscript “Elucidating the protein interaction network of one of the largest icosahedral capsids in the virosphere" by Hela Safi, Alain Schmitt, Alwena Tollec, Lucid Belmudes, Agathe M. G. Colmant, Olivier Poirot, Sebastien Santini, Matthieu Legendre, Yohann Couté, Hugo Bisio, Chantal Abergel.

bioRxiv 2025.10.13.682015; doi: https://doi.org/10.1101/2025.10.13.682015 

 

The dataset includes co-IP networks with functional categories, LCA taxonomic level conservation, icosahedral shape status, and expression cluster color codes.

Requirements: Cytoscape (https://cytoscape.org/)
DOI: 10.6084/m9.figshare.30363739
title: All data

description: The dataset of studies that focus on the effect of grazing exclusion in grassland
DOI: 10.6084/m9.figshare.30363739.v1
title: All data

description: The dataset of studies that focus on the effect of grazing exclusion in grassland
DOI: 10.15468/dl.xdc53c
title: Occurrence Download

description: A dataset containing 6542 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Daucus pusillus",
 "Year 1975-2024"
 ]
}

 The dataset includes 6542 records from 182 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023004-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2gyf4
title: Occurrence Download

description: A dataset containing 1125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((100.22551 17.38188,128.38245 17.38188,128.38245 42.46033,100.22551 42.46033,100.22551 17.38188))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Delphinium anthriscifolium"
 ]
}

 The dataset includes 1125 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023005-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkwnqh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trogoniformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-140 -50,-130 -50,-130 -40,-140 -40,-140 -50))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023007-251009101135966/datasets/export for details.
DOI: 10.57903/uj/tebdzw
title: Targeted expression of heme oxygenase‑1 in satellite cells improves skeletal muscle pathology in dystrophic mice - research data

description: Dataset of raw data for graphs related to the publication doi.org/10.1186/s13395-024-00346-2.
DOI: 10.15468/dl.ssyvhs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carduus acanthoides",
 "Country is Tajikistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023008-251009101135966/datasets/export for details.
DOI: 10.15468/dl.ekrqmj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carduus acanthoides",
 "Country is Uzbekistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023010-251009101135966/datasets/export for details.
DOI: 10.15468/dl.5qpzh9
title: Occurrence Download

description: A dataset containing 1459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carduus acanthoides",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1459 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023009-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28369472.v3
title: Evolution in response to an abiotic stress shapes species coexistence - Data and scripts

description: # evolution_cadmium_coexistenceThis material is a companion to the paper "Evolution in response to an abiotic stress shapes species coexistence"This information is also available in the git repository: https://github.com/irfragata/evolution_cadmium_coexistenceThe scripts available allow with the data set provided to replicate all the analyses done in the paper, as well as the figures.Inside each folder there is a ReadMe file explaining the different files and folder available. The general description of the folder is as follows:The Data folder contains the raw dataThe Code folder contains the scripts to perform the analysesThe Analyses folder contains intermediate outputs required for the analyses.The Plots folder contains the figures used in the manuscript (output from the code)The hml_files folder contains html files of the code and output of the main analyses and figures.Given that running the cxr package requires sometime, we provided the intermediate files used to generate the figure, but we also provide the code done to generate the files, to ensure the total reproducibility analyses.For the purpose of Open Access, a CC-BY 4.0 public copyright licence has been applied to the contents of this repository.<br>
DOI: 10.6084/m9.figshare.30363541
title: ATG-9-mediated synaptic autophagy promotes aversive learning under stress in <i>C. elegans</i>

description: raw data for the paper
DOI: 10.6084/m9.figshare.30363541.v1
title: ATG-9-mediated synaptic autophagy promotes aversive learning under stress in <i>C. elegans</i>

description: raw data for the paper
DOI: 10.15468/dl.gehtbf
title: Occurrence Download

description: A dataset containing 1759236 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Persicaria"
 ]
}

 The dataset includes 1759236 records from 3832 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022931-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110617359
title: Persepolis Fortification Anepigraphic Tablet 0270.201, PFAnep 0270.201

description: [Text Description:] Administrative texts with seals ❧ [Text or Publication Number Note:] PFAnep 0270.201, PFUT 0270-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on obverse and reverse. ❧ [Physical Object Note:] Minor cracking throughout tablet.
DOI: 10.25549/inscriptifact-ouc110619699
title: Persepolis Fortification Anepigraphic Tablet 0137.202, PFAnep 0137.202

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PFAnep 0137.202, PFUT 0137-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on obverse, reverse and flat edge. ❧ [Physical Object Note:] Bottom edge toward round edge and tip of round edge chipped. Hole in bottom edge and flat edge.
DOI: 10.25549/inscriptifact-ouc110617354
title: Persepolis Fortification Anepigraphic Tablet 0270.201, PFAnep 0270.201

description: [Text Description:] Administrative texts with seals ❧ [Text or Publication Number Note:] PFAnep 0270.201, PFUT 0270-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on obverse and reverse. ❧ [Physical Object Note:] Minor cracking throughout tablet.
DOI: 10.25549/inscriptifact-ouc110619683
title: Persepolis Fortification Anepigraphic Tablet 0134.206, PFAnep 0134.206

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PFAnep 0134.206, PFUT 0134-206 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on obverse, reverse, upper edge, bottom edge and flat edge. ❧ [Physical Object Note:] Minor damage on tablet. Crack in obverse face.
DOI: 10.25549/inscriptifact-ouc110617353
title: Persepolis Fortification Anepigraphic Tablet 0021.203, PFAnep 0021.203

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0021.203, PFUT 0021-203 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, obverse, reverse, upper edge ❧ [Physical Object Note:] Obverse toward round edge chipped. Flat edge toward upper edge broken. Cracks and chips throughout tablet.
DOI: 10.25549/inscriptifact-ouc110619670
title: Persepolis Fortification Anepigraphic Tablet 0134.207, PFAnep 0134.207

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PFAnep 0134.207, PFUT 0134-207 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on obverse, reverse, upper edge, bottom edge and flat edge. ❧ [Physical Object Note:] Minor damage on tablet. Cracks throughout.
DOI: 10.25549/inscriptifact-ouc110617351
title: Persepolis Fortification Anepigraphic Tablet 0270.201, PFAnep 0270.201

description: [Text Description:] Administrative texts with seals ❧ [Text or Publication Number Note:] PFAnep 0270.201, PFUT 0270-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on obverse and reverse. ❧ [Physical Object Note:] Minor cracking throughout tablet.
DOI: 10.25549/inscriptifact-ouc110619657
title: Persepolis Fortification Anepigraphic Tablet 0134.206, PFAnep 0134.206

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PFAnep 0134.206, PFUT 0134-206 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on obverse, reverse, upper edge, bottom edge and flat edge. ❧ [Physical Object Note:] Minor damage on tablet. Crack in obverse face.
DOI: 10.25549/inscriptifact-ouc110617114
title: Persepolis Fortification Aramaic Text 681, PFAT 681

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAT 681 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription on bottom edge and upper edge. Seal impression (?) on reverse. ❧ [Physical Object Note:] Cracks and chips throughout tablet.
DOI: 10.25549/inscriptifact-ouc110619653
title: Persepolis Fortification Anepigraphic Tablet 0134.206, PFAnep 0134.206

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PFAnep 0134.206, PFUT 0134-206 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on obverse, reverse, upper edge, bottom edge and flat edge. ❧ [Physical Object Note:] Minor damage on tablet. Crack in obverse face.
DOI: 10.25549/inscriptifact-ouc110617108
title: Persepolis Fortification Aramaic Text 680, PFAT 680

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAT 680 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription on obverse, reverse, upper edge and round edge. Seal impression on reverse and obverse (?). ❧ [Physical Object Note:] Cracks throughout tablet.
DOI: 10.15468/dl.y2n99z
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paphiopedilum hirsutissimum"
 ]
}

 The dataset includes 170 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026774-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110619651
title: Persepolis Fortification Anepigraphic Tablet 0134.205, PFAnep 0134.205

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PFAnep 0134.205, PFUT 0134-205 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on obverse, reverse and flat edge. ❧ [Physical Object Note:] Upper edge toward flat edge broken. Bottom edge, flat edge corner broken. Cracks in obverse & reverse face. Chip in round edge.