cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7899977
title: Bone mineral density and inflammatory bowel disease severity

description: Inflammatory bowel disease (IBD) is associated with low bone mineral density (BMD). In this study, the association between disease severity and BMD in patients with IBD was evaluated. Associations between BMD and the Montreal classification, disease activity and drug therapy were also tested. A cross-sectional prevalence study with a comparison group was conducted. One hundred and twenty-eight patients were evaluated: 68 patients with ulcerative colitis (UC), and 60 with Crohn's disease (CD). The control group consisted of 67 healthy subjects. All patients and controls had BMD measured and in IBD patients, current medications, hospitalization, and disease location, extent and phenotype, according to the Montreal classification, were recorded. Multiple correspondence analysis was applied to evaluate categorical variables. In the CD group, most patients were diagnosed between 17–40 years of age. Ileocolonic and non-stricturing non-penetrating disease were the most frequent disease location and behavior, respectively. In UC patients, extensive colitis was the most frequent disease location. UC and CD patients were more likely to have osteopenia than controls (OR=14.93/OR=24.38, respectively). In the CD group, male patients, perianal disease, penetrating behavior and age at diagnosis &gt;40 years were associated with low BMD. Taking azathioprine and infliximab also seemed to be associated with osteopenia. In the UC group, we observed an association between low BMD and male patients, left colitis, corticosteroid use and hospitalization. Disease activity was not associated with osteopenia or osteoporosis in CD and UC patients. Disease severity seems to be associated with osteopenia in IBD patients.
DOI: 10.6084/m9.figshare.7899980
title: Specific alterations in plasma proteins during depressed, manic, and euthymic states of bipolar disorder

description: Bipolar disorder (BD) is a common psychiatric mood disorder affecting more than 1-2% of the general population of different European countries. Unfortunately, there is no objective laboratory-based test to aid BD diagnosis or monitor its progression, and little is known about the molecular basis of BD. Here, we performed a comparative proteomic study to identify differentially expressed plasma proteins in various BD mood states (depressed BD, manic BD, and euthymic BD) relative to healthy controls. A total of 10 euthymic BD, 20 depressed BD, 15 manic BD, and 20 demographically matched healthy control subjects were recruited. Seven high-abundance proteins were immunodepleted in plasma samples from the 4 experimental groups, which were then subjected to proteome-wide expression profiling by two-dimensional electrophoresis and matrix-assisted laser desorption/ionization-time-of-flight/time-of-flight tandem mass spectrometry. Proteomic results were validated by immunoblotting and bioinformatically analyzed using MetaCore. From a total of 32 proteins identified with 1.5-fold changes in expression compared with healthy controls, 16 proteins were perturbed in BD independent of mood state, while 16 proteins were specifically associated with particular BD mood states. Two mood-independent differential proteins, apolipoprotein (Apo) A1 and Apo L1, suggest that BD pathophysiology may be associated with early perturbations in lipid metabolism. Moreover, down-regulation of one mood-dependent protein, carbonic anhydrase 1 (CA-1), suggests it may be involved in the pathophysiology of depressive episodes in BD. Thus, BD pathophysiology may be associated with early perturbations in lipid metabolism that are independent of mood state, while CA-1 may be involved in the pathophysiology of depressive episodes.
DOI: 10.6084/m9.figshare.7899983.v1
title: Prevalence of sexually transmitted infections and bacterial vaginosis among lesbian women: systematic review and recommendations to improve care

description: Our aim was to systematically review data about the risk of sexually transmitted infections (STI) and bacterial vaginosis among lesbian women and to suggest strategies to improve prevention, diagnosis and treatment. A search strategy for lesbian, STI and bacterial vaginosis was applied to PubMed, LILACS and BDENF databases. Of 387 unique references retrieved, 22 fulfilled the inclusion criteria (cross-sectional studies reporting prevalence for 8 STIs/bacterial vaginosis and history of a STI). The most frequent infection reported was bacterial vaginosis, and none study reported data on hepatitis B. A wide range of prevalence was observed for most infections. In terms of risk factors, the number of sexual partners, the past or current smoking, a history of forced sex and sexual stigma seem to increase the risk of STI and bacterial vaginosis. The findings of this review are discussed considering guidelines directly addressing the LGBT community’s health and relevant studies investigating both safe sexual practices and the intricate relationship between LGBT people and their care providers. A set of recommendations to improve preventive care for lesbian women is proposed. Affirming that little is known about the extent of STIs and bacterial vaginosis transmission in female-to-female sexual activities or about the risk factors for STI and bacterial vaginosis among lesbian women is reasonable. In fact, the overall quality of the studies was low or very low with significant uncertainty around their findings. However, we consider that the available knowledge indicates some paths to be followed by care providers and policy decision-makers to improve their actions towards better sexual health of lesbian women.
DOI: 10.15468/dl.vcmv3h
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jurinea xerophytica Iljin"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041379-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7smsx4
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allanblackia stuhlmannii (Engl.) Engl."
 ]
}

 The dataset includes 165 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041380-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25486486
title: Influence of General Health on Quality of Life by the Caregiver and Burden Care as a Mediator: Bayesian Estimator Structural Equation analysis

description: Influence of General Health on Quality of Life by the Caregiver and Burden Care as a Mediator: Bayesian Estimator Structural Equation analysis
DOI: 10.15468/dl.t5v3xw
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jurinea zakirovii Iljin"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041382-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3axz9
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allantoma decandra (Ducke) S.A.Mori, Ya Y.Huang & Prance"
 ]
}

 The dataset includes 425 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041381-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykrrr2
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia abscondita Champl."
 ]
}

 The dataset includes 63 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041383-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jt7dfc
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allantoma integrifolia (Ducke) S.A.Mori, Ya Y.Huang & Prance"
 ]
}

 The dataset includes 99 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041384-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkaukt
title: Occurrence Download

description: A dataset containing 4004 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bryophytes of Vietnam (PHH Herbarium, Cryptogam Collection)"
 ]
}

 The dataset includes 4004 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041385-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rg6ebv
title: Occurrence Download

description: A dataset containing 341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Clausena lansium (Lour.) Skeels"
 ]
}

 The dataset includes 341 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041386-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnhyas
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia aconitiflora (A.Meeuse) Cubey"
 ]
}

 The dataset includes 58 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041388-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmnzwz
title: Occurrence Download

description: A dataset containing 633 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allantoma lineata (Mart. ex O.Berg) Miers"
 ]
}

 The dataset includes 633 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041387-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgyrfh
title: Occurrence Download

description: A dataset containing 4004 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bryophytes of Vietnam (PHH Herbarium, Cryptogam Collection)"
 ]
}

 The dataset includes 4004 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041390-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b8dsuh
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia acuta (C.B.Clarke) Fourc."
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041391-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3sc6v
title: Occurrence Download

description: A dataset containing 935 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allocasuarina acutivalvis (F.Muell.) L.A.S.Johnson"
 ]
}

 The dataset includes 935 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041392-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3g44b
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia acutangula H.S.Lo & D.Fang"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041393-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhajkh
title: Occurrence Download

description: A dataset containing 1164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allocasuarina campestris (Diels) L.A.S.Johnson"
 ]
}

 The dataset includes 1164 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041394-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzath7
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia acutifolia Hedrén"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041395-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10869234
title: Supplementary Information: Multimodal binding and inhibition of bacterial ribosomes by the  2 antimicrobial peptides Api137 and Api88

description: This dataset contains important data files for the MD simulation that are part of this publication.

 

The "simulations" directory contains Gromacs parameter files (.mdp) and the run input files (.tpr) as well as the final coordinate files (.gro) of each individual production simulation.

 

The directory "figure3" contains the raw data used to create Figure 3 in the manuscript.

 

The subdirectory "a" contains the data for the PCA projection plot in subfigure 3a. It includes projections of the simulation ensembles of Api88 conformation I-III on to the two dominant conformational modes (.xvg) and the respective extreme conformations (.pdb). The projections of the three initial models and the optimized structure set are also included.

 

Subdirectory "b" contains a numpy array (.npy) with the data for the correlation heatmap in subfigure 3b.

 

Subdirectory "c" contains the results ov several correlation-optimization searches. Each directory "N_maps" contains the search results for N correlation-optimized structures in the Api88 trajectories in the form of a pickled python dictionary (best_maps.pkl). The dictionary has the following keys:



used: Already used sets of MD structures (frozenset)

selection: Structure set selected in the last iteration (set)

weights: weights of each structure in the selected structure set (numpy array)

iteration: Counter of the last iteration (int)


Further, the optimized correlation coefficients of the complete MD ensemble (max_correlation_ensemble.pickle) and the initial structures (max_correlation_initial.pickle). For reasons of floating point precision in the optimization algorithm these have to be scaled by -1/1000 to obtain the correct result.
DOI: 10.15468/dl.q89vaf
title: Occurrence Download

description: A dataset containing 605 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allocasuarina decaisneana (F.Muell.) L.A.S.Johnson"
 ]
}

 The dataset includes 605 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041396-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.72hk5d
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia addisoniensis (Elmer) C.M.Gao & Y.F.Deng"
 ]
}

 The dataset includes 24 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041398-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzn5wv
title: Occurrence Download

description: A dataset containing 3198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Buddleja davidii Franch."
 ]
}

 The dataset includes 3198 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041397-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2n3b7v
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allocasuarina dielsiana (C.A.Gardner) L.A.S.Johnson"
 ]
}

 The dataset includes 235 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041399-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u3tsur
title: Occurrence Download

description: A dataset containing 1279 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia adhatoda L."
 ]
}

 The dataset includes 1279 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041400-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7fknr
title: Occurrence Download

description: A dataset containing 624 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allocasuarina fraseriana (Miq.) L.A.S.Johnson"
 ]
}

 The dataset includes 624 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041401-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkcf5v
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia adhatodoides (E.Mey. ex Nees) V.A.W.Graham"
 ]
}

 The dataset includes 168 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041404-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkrhyt
title: Occurrence Download

description: A dataset containing 634 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allocasuarina huegeliana (Miq.) L.A.S.Johnson"
 ]
}

 The dataset includes 634 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041403-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkmja5
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia aequalis Benoist"
 ]
}

 The dataset includes 37 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041405-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2pcsn
title: Occurrence Download

description: A dataset containing 994 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allocasuarina inophloia (F.Muell. & F.M.Bailey) L.A.S.Johnson"
 ]
}

 The dataset includes 994 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041406-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10869233
title: Supplementary Information: Multimodal binding and inhibition of bacterial ribosomes by the  2 antimicrobial peptides Api137 and Api88

description: This dataset contains important data files for the MD simulation that are part of this publication.

 

The "simulations" directory contains Gromacs parameter files (.mdp) and the run input files (.tpr) as well as the final coordinate files (.gro) of each individual production simulation.

 

The directory "figure3" contains the raw data used to create Figure 3 in the manuscript.

 

The subdirectory "a" contains the data for the PCA projection plot in subfigure 3a. It includes projections of the simulation ensembles of Api88 conformation I-III on to the two dominant conformational modes (.xvg) and the respective extreme conformations (.pdb). The projections of the three initial models and the optimized structure set are also included.

 

Subdirectory "b" contains a numpy array (.npy) with the data for the correlation heatmap in subfigure 3b.

 

Subdirectory "c" contains the results of several correlation-optimization searches. Each directory "N#_maps", where # is to be replaced by the number of structures in the set, contains the search results for N correlation-optimized structures in the Api88 trajectories in the form of a pickled python dictionary (state.pkl). The dictionary has the following keys:



used: Already used sets of MD structures (frozenset)

selection: Structure set selected in the last iteration (set)

weights: weights of each structure in the selected structure set (numpy array)

iteration: Counter of the last iteration (int)


 

The directory "supplentary_figure_correlation_time" contains the data for a plot of the optimized correlation coefficient as a function of simulation time. The results of the optimization algorithms (as pickled python objects) are included in the subdirectories with the associated trajectory length as a name.