cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1r4p8
title: Genetic structuring in a Neotropical palm analyzed through an Andean orogenesis‐scenario

description: Andean orogenesis has driven the development of very high plant diversity
 in the Neotropics through its impact on landscape evolution and
 climate. The analysis of the intraspecific patterns of genetic structure
 in plants would permit inferring the effects of Andean uplift on the
 evolution and diversification of Neotropical flora. In this study, using
 microsatellite markers and Bayesian clustering analyses, we
 report the presence of four genetic clusters for the palm
 Oenocarpus bataua var. bataua which are located within four
 biogeographic regions in northwestern South America: (a) Chocó
 rain forest, (b) Amotape-Huancabamba Zone, (c) northwestern
 Amazonian rain forest, and (d) southwestern Amazonian rain
 forest. We hypothesize that these clusters developed following
 three genetic diversification events mainly promoted by Andean
 orogenic events. Additionally, the distinct current climate dynamics
 among northwestern and southwestern Amazonia may maintain the
 genetic diversification detected in the western Amazon basin.
 Genetic exchange was identified between the clusters, including
 across the Andes region, discarding the possibility of any
 cluster to diversify as a distinct intraspecific variety. We
 identified a hot spot of genetic diversity in the northern
 Peruvian Amazon around the locality of Iquitos. We also detected
 a decrease in diversity with distance from this area in westward and
 southward direction within the Amazon basin and the eastern
 Andean foothills. Additionally, we confirmed the existence and
 divergence of O. bataua var. bataua from var. oligocarpus in
 northern South America, possibly expanding the distributional range of
 the latter variety beyond eastern Venezuela, to the central and
 eastern Andean cordilleras of Colombia. Based on our results, we suggest
 that Andean orogenesis is the main driver of genetic structuring
 and diversification in O. bataua within northwestern South
 America.
description: Microsatellite genotypes of Oenocarpus bataua
 Microsatellite genotypes for 644 Oenocarpus bataua samples from
 Colombia, Ecuador, Peru, Bolivia, and French Guiana, genotyped at 7 SSR
 loci. The genotype file is in GenAlEx format, which can be easily exported
 to many other formats. The grid A1 shows the number of loci. The grid B1
 shows the number of individualas. The grid C1 shows the number of
 populations. Following columns in the first row show number of individuals
 within populations. The second row shows populations names. The third row
 shows loci names. Following rows show the SSR data.
description: Samples collected in northern South America. Young leaf material
 was collected for DNA extraction using the DNeasy plant mini kit (Qiagen).
 Seven SSR loci were amplified at 644 samples using Multiplex PCR and
 fluorescent labeled forward primers.
DOI: 10.5061/dryad.qn55s
title: Data from: Chronology of reproductive investment determines predation risk aversion in a felid-ungulate system

description: Fear of predators can behaviorally mediate prey population dynamics,
 particularly when predation risk influences reproductive investment.
 However, the costs of reproductive investment may mitigate predation risk
 aversion relative to periods when the link between reproductive output and
 prey behavior is weaker. We posit that intensity of reproductive
 investment in ungulates may predict their response to predation risk such
 that the sexes increase risk exposure during biological seasons that are
 pivotal to reproductive success, such as the fawn‐rearing and breeding
 seasons for females and males, respectively. We examined the activity
 patterns of sympatric white‐tailed deer (Odocoileus virginianus), a
 sexually segregated polygynous ungulate, and Florida panthers (Puma
 concolor coryi) in the context of the “risky times – risky places
 hypothesis” and the reproductive strategy hypothesis. We compared
 detection rates and diel activity overlap of both species using
 motion‐triggered camera traps positioned on (n = 120)
 and off (n = 60) anthropogenic trails across five
 reproductive seasons. Florida panthers were nocturnal and primarily
 observed on‐trail providing an experimental framework with risky times and
 risky places. Contrary to studies in other taxa inversely correlating prey
 reproductive investment to predation risk, the sexes of deer were more
 risk prone during sex‐specific seasons associated with intense
 reproductive investment. Our results suggest spatiotemporally variable
 predation risk influences sex‐specific behavioral decision‐making in deer
 such that reproductive success is maximized.
description: Deer and panther
 detection dataThese data include the
 camera id and species detection counts at each camera for 5 biological
 seasons of white-tailed deer (fawning, rearing, pre-rut, rut, and
 post-rut) at 2 diel time periods, day and night.detection_data.csv
DOI: 10.15468/dl.98cssb
title: Occurrence Download

description: A dataset containing 126031 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mosquito Occurrence Dataset"
 ]
}

 The dataset includes 126031 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001919-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.pvmcvdng6
title: Effects of supervised exercise training during pregnancy on psychological well-being among overweight and obese women: Secondary analyses of the ETIP-trial, a randomized controlled trial.

description: Objectives: Women with high body mass index (BMI) have increased risk for
 symptoms of anxiety and depression during pregnancy and postpartum. In
 this pre-specified secondary analysis from the ETIP trial, our aim was to
 examine effects of supervised exercise during pregnancy on psychological
 well-being in late pregnancy and postpartum among women with a
 pre-pregnancy BMI ≥ 28 kg/m2. Design: Single-centre, parallel group,
 randomized controlled trial. Setting: University Hospital, Norway
 Participants: Ninety-one women (age 31.2±4.1 years, BMI 34.5±4.2 kg/m2),
 46 in the exercise group, 45 in the control group, were included in the
 trial. Intervention: The exercise group was offered three weekly
 supervised exercise sessions (35 minutes of moderate intensity
 walking/running and 25 minutes of resistance training), until delivery.
 Primary and secondary outcomes measures: Primary analyses were based on
 intention to treat, with secondary per-protocol analyses. To assess
 psychological well-being, we used the «Psychological General Well-Being
 Index» (PGWBI) at inclusion (gestational week 12-18), late pregnancy
 (gestational week 34-37), and three months postpartum. We assessed
 postpartum depression using the «Edinburgh Postnatal Depression Scale»
 (EDPS). Results: Numbers completed data collection: Late pregnancy 72
 (exercise 38, control 36), postpartum 70 (exercise 36, control 34). In the
 exercise group, 50% adhered to the exercise protocol. Baseline PGWBI for
 all women was 76.4±12.6. Late pregnancy PGWBI; exercise 76.6 (95% CI 72.2,
 81.0), control 74.0 (95% CI 69.4, 78.5) (p = 0.42). Postpartum PGWBI;
 exercise 85.4 (95% CI 81.9, 88.8), control 84.6 (95% CI 80.8, 88.4) (with
 no between-group difference, p = 0.77). There was no between-group
 difference in EDPS; exercise 2.96 (95% CI 1.7, 4.2), control 3.48 (95% CI
 2.3, 4.7) (p = 0.55). Conclusions: We found no effect of supervised
 exercise during pregnancy on psychological well-being among women with
 high BMI. Our findings may be hampered by low adherence to the exercise
 protocol.
DOI: 10.5061/dryad.83vc5
title: Data from: Maximum cardiac performance of Antarctic fishes that lack haemoglobin and myoglobin: exploring the effect of warming on nature’s natural knockouts

description: Comparisons among related species provide valuable insight into the
 functional consequences of natural genetic mutations. We assessed cardiac
 function at ambient and elevated temperatures in Antarctic notothenioids
 with contrasting levels of the oxygen binding proteins, haemoglobin (Hb)
 and myoglobin (Mb), to elucidate changes in cardiac performance that may
 compensate for impaired O2 transport. Notothenia coriiceps (Hb+Mb+) at 1oC
 had the highest maximum cardiac work rate (WC) and pressure generating
 capacity, but lowest relative ventricular mass and maximum cardiac output
 (Q̇) when compared with two icefish species, Chionodraco rastrospinosus
 (Hb-Mb+) and Chaenocephalus aceratus (Hb-Mb-). Cardiomegaly associated
 with absence of Hb generated an exceptionally large maximum stroke volume
 (VS) and Q̇, but a lower WC. However, C. rastrospinosus had a larger
 ventricle, a higher intrinsic heart rate (fH), and greater maximum VS and
 Q̇ than C. aceratus, suggesting that cardiac Mb has functional relevance.
 Warming to 4oC increased fH, but only increased maximum Q̇ in icefishes,
 while maximum WC and pressure development increased in N. coriiceps (both
 ~2.5x that of C. aceratus). The Hb+Mb+ myocardium generated considerable
 Q̇ against raised afterload, unlike icefish hearts. The presence of Hb and
 Mb enhances cardiac performance, and likely resilience to near-future
 ocean warming.
description: Antarctic fish in situ
 heart data_Egginton et al.Data for in situ heart
 performance and morphometrics of fish used
DOI: 10.5061/dryad.1320p
title: Data from: Female American black bears do not alter space use or movements to reduce infanticide risk

description: Infanticide occurs in a variety of animal species and infanticide risk has
 large implications for the evolution of behavior. Further, the sex
 hypothesis of sexual segregation predicts that for species in which
 infanticide occurs, females with dependent young will avoid males to
 reduce risk of sexually-selected infanticide. Infanticide risk-avoidance
 behavior has been studied primarily in social species, but also occurs in
 some solitary species. We used generalized linear mixed models to
 determine if space use and movements of female American black bears (Ursus
 americanus) during the breeding season were consistent with the sex
 hypothesis of sexual segregation in the Upper Peninsula of Michigan, USA.
 Space use and movements of female black bears (n = 16) were not consistent
 with avoidance behavior to reduce sexually-selected infanticide risk.
 Females with cubs occupied core areas (mean = 4.64 km2, standard error
 [SE] = 1.28) and home ranges (mean = 19.46 km2, SE = 5.10) of similar size
 to females without cubs (core area [mean = 4.11 km2, SE = 0.59]; home
 range [mean = 16.07 km2, SE = 2.26]), and those core areas and home ranges
 were not in areas with lesser relative probability of male use.
 Additionally, females with cubs did not reduce movements during times of
 day when male movements were greatest. As female bears do avoid
 potentially infanticidal males in populations with greater levels of
 infanticide, female black bears may exhibit variation in avoidance
 behavior based on the occurrence of infanticide.
description: Collar02082_BB01_2009Collar01968_BB02_2009Collar02080_BB03_2009Collar02081_BB04_2009Collar02079_BB05_2009Collar02078_BB06_2009Collar02086_BB07_2009Collar02083_BB08_2009Collar02085_BB09_2009Collar02088_BB10_2009Collar02082_BB08_2010Collar02087_BB14_2010Collar02080_BB15_2010Collar02081_BB16_2010Collar02088_BB28_2010Collar02079_BB34_2010Collar02083_BB36_2010Collar02078_BB37_2010Collar02084_BB38_2010Collar02082_BB39_2010Collar01968_BB41_2010Collar02078_BB43_2010Collar02083_BB44_2010Collar02083_BB08_2011Collar02079_BB28_2011Collar02087_BB43_2011Collar01968_BB44_2011Collar02085_BB53_2011Collar02081_BB54_2011Collar02086_BB55_2011Collar02078_BB56_2011Collar02082_BB58_2011Collar02080_BB103_2013Collar33418_BB104_2013Collar02085_BB112_2013Collar02083_BB115_2013Collar33417_BB116_2013Collar33417_BB117_2013Collar02088_BB126_2013Collar02078_BB138_2013Collar02079_BB144_2013Collar02082_BB148_2013Collar02083_BB112_2014Collar02080_BB116_2014Collar33417_BB120_2014Collar02079_BB141_2014Collar35773_BB142_2014Collar35775_BB144_2014Collar35774_BB146_2014Collar35779_BB161_2014Collar33418_BB165_2014
DOI: 10.15468/dl.tmwq5j
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ethiopia",
 "OccurrenceStatus is Present",
 "TaxonKey is Anopheles stephensi",
 "Year 1000-2026"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001935-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.sr37c
title: Data from: City life alters the gut microbiome and stable isotope profiling of the eastern water dragon (Intellagama lesueurii)

description: Urbanisation is one of the most significant threats to biodiversity, due
 to the rapid and large-scale environmental alterations it imposes on the
 natural landscape. It is, therefore, imperative that we understand the
 consequences of, and mechanisms by which, species can respond to it. In
 recent years, research has shown that plasticity of the gut microbiome may
 be an important mechanism by which animals can adapt to environmental
 change, yet empirical evidence of this in wild non-model species remains
 sparse. Using an empirical replicated study system, we show that city life
 alters the gut microbiome of a wild native non-model species – the eastern
 water dragon (Intellagama lesueurii). City dragons exhibit a more diverse
 gut microbiome than their native riparian counterparts and show gut
 microbial signatures of a high fat and plant rich diet. These results
 highlight the role that gut microbial plasticity plays in an animals’
 response to human-altered landscapes.
description: Full unrarefied OTU
 tableUnrarefied OTU data of
 the gut microbiome from four city park and four native habitat populations
 of the eastern water dragon.Appendix 2
 S1.xlsbCommon OTUs between city
 park and native habitat dragonsCommon OTUs from the gut
 microbiome of four city park and four native habitat populations of the
 eastern water dragonAppendix 2
 S2.xlsbOTUs present in four
 native habitat populations of the eastern water dragonOTUs present in the gut
 microbiome of four native habitat populations of the eastern water
 dragonAppendix 2
 S3.xlsbOTUs present in four
 city park populations of the eastern water dragonOTUs present in the gut
 microbiome of four city park populations of the eastern water
 dragonAppendix 2
 S4.xlsbSample information and
 statistical output of city park and native habitat dragon gut microbiome
 comparisonsSample information,
 Adonis test statistics, T-test statistics on alpha diversity, core
 microbiome statistics and G-test results for gut microbial comparisons i)
 between habitat types, ii) between sexes and iii) between populations of
 four city park and four native habitat populations of the eastern water
 dragon.Appendix
 3.xlsx
DOI: 10.5061/dryad.qv9s4mw99
title: Data for: Interactive effects of foundation species on ecosystem functioning and stability in response to disturbance

description: A major challenge in ecology is to understand determinants
 of ecosystem functioning and stability in the face of disturbance. Some important species can strongly shape community structure and ecosystem functioning, but their impacts and interactions on ecosystem-level responses to disturbance are less well known. Shallow ponds provide a model system in which to study the effects of such species because some taxa mitigate transitions between alternate ecosystem states caused by eutrophication. We performed pond experiments to test how two foundation species (a macrophyte and a mussel) affected the biomass of planktonic primary producers and its stability in response to nutrient additions. Individually, each species reduced phytoplankton biomass and tended to increase rates of recovery from disturbance, but together the species reversed these effects, particularly with larger nutrient additions. This reversal was mediated by high cyanobacterial dominance of the community and a resulting loss of trait evenness. Effects of the foundation species on primary producer biomass were associated with effects on other ecosystem properties, including turbidity and dissolved oxygen. Our work highlights the important role of foundation species and their interactive effects in determining responses of ecosystem functioning to disturbance.
description: This file contains all data and metadata for the experiments
 described in "Interactive effects of foundation species on ecosystem
 functioning and stability in response to disturbance", published in
 the Proceedings of the Royal Society B.  Affiliated
 scripts will also be made available on the Narwani Lab github site under a
 repository named "NUDREM"
DOI: 10.5061/dryad.98mp657
title: Data from: Using parsimony-guided tree proposals to accelerate convergence in Bayesian phylogenetic inference

description: Sampling across tree space is one of the major challenges in Bayesian
 phylogenetic inference using Markov chain Monte Carlo (MCMC)
 algorithms. Standard MCMC tree moves consider small random
 perturbations of the topology, and select from candidate trees at random
 or based on the distance between the old and new topologies. MCMC
 algorithms using such moves tend to get trapped in tree space, making them
 slow in finding the globally most probable trees (known as
 `convergence') and in estimating the correct proportions of the
 different types of them (known as `mixing'). Here, we
 introduce a new class of moves, which propose trees based on their
 parsimony scores. The proposal distribution derived from the
 parsimony scores is a quickly computable albeit rough approximation of the
 conditional posterior distribution over candidate trees. We
 demonstrate with simulations that parsimony-guided moves correctly sample
 the uniform distribution of topologies from the prior. We then
 evaluate their performance against standard moves using six challenging
 empirical datasets, for which we were able to obtain accurate reference
 estimates of the posterior using long MCMC runs, a mix of topology
 proposals, and Metropolis coupling. On these datasets, ranging in
 size from 357 to 934 taxa and from 1,740 to 5,681 sites, we find that
 single chains using parsimony-guided moves usually converge an order of
 magnitude faster than chains using standard moves. They also
 exhibit better mixing, that is, they cover the most probable trees more
 quickly. Our results show that tree moves based on quick and
 dirty estimates of the posterior probability can significantly outperform
 standard moves. Future research will have to show to what extent
 the performance of such moves can be improved further by finding better
 ways of approximating the posterior probability, taking the trade-off
 between accuracy and speed into account.
description: Supplemental data for
 parsimony-guided tree proposals MrBayes scripts,
 supplemental tables and figures ParsTreePropSuppl.pdf
DOI: 10.15468/dl.m8748d
title: Occurrence Download

description: A dataset containing 227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sicana odorifera",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 227 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001937-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.278cr0g
title: Data from: Antibiotic susceptibility of Propionibacterium acnes isolated from patients with acne in a public hospital in Southwest China: prospective cross-sectional study

description: Objective Antibiotics have been routinely used for several
 decades against Propionibacterium acnes (P. acnes), but
 antibiotic resistance of P. acnes is becoming a global
 problem. Only one related Chinese study is available. The aim of this
 study was to assess the antibiotic susceptibility of P.
 acnes obtained from patients with acne in Southwest China.
 Design This was a prospective cross-sectional study. Cutaneous
 samples were obtained from acne lesions on the face of 375 patients.
 Samples were cultured in anaerobic medium to identify the presence
 of P. acnes. Susceptibility tests of isolated P.
 acnes were performed for tetracycline, doxycycline, clindamycin,
 erythromycin, azithromycin and clarithromycin using the Epsilometer test.
 Results P. acnes was isolated from 227 patients; 224
 isolates (98.7%) were susceptible to doxycycline and 220 (96.9%) were
 susceptible to tetracycline, followed by clindamycin and clarithromycin in
 101 (44.5%) and 102 (44.93%) isolates, respectively. Susceptibility
 of P. acnes was detected for erythromycin in 96 (42.3%)
 patients, followed by azithromycin in 94 (41.4%). Subjects who received
 antibiotics (topical and oral) had higher frequencies of
 antibiotic-resistant P. acnes as well as increased
 antibiotic minimum inhibitory concentrations compared with patients
 without antibiotic treatment. Conclusions P. acnes was
 highly sensitive to cyclines (doxycycline and tetracycline). P.
 acnes showed higher resistance rates to
 macrolides–lincosamides–streptogramins antibiotics (such as erythromycin,
 azithromycin, clarithromycin and clindamycin). The irrational use of
 antibiotics for acne treatment is probably a problem in China and
 elsewhere. These results suggest that dermatologists should be more
 prudent in prescribing antibiotics for acne.
description: Original data
 Encoding: 1=topical
 use; 2=oral administration; 3=no antibiotic use; 4=without previous
 therapy.
DOI: 10.15468/dl.qxrjpn
title: Occurrence Download

description: A dataset containing 1329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "Geometry POLYGON((-78.10465 12.11064,-78.23988 7.17973,-78.30749 1.24868,-72.99283 -1.95278,-69.8827 -3.70846,-69.74748 0.27802,-67.65153 2.77855,-67.83917 6.45424,-73.04525 9.26695,-71.42258 12.45373,-78.10465 12.11064))",
 "HasGeospatialIssue is false",
 "TaxonKey is Inia geoffrensis"
 ]
}

 The dataset includes 1329 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001936-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.