cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5ywkyz
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is AMNH Bird Collection",
 "TaxonKey is Turdus migratorius"
 ]
}

 The dataset's 4 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033466-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13992848
title: MALDI-TOF MS data for: Design and validation of genus-specific semi-nested primers for simple and accurate identification of Enterobacter strains
DOI: 10.5281/zenodo.13992849
title: MALDI-TOF MS data for: Design and validation of genus-specific semi-nested primers for simple and accurate identification of Enterobacter strains
DOI: 10.15468/dl.xw6mgs
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hesperocyon coloradensis"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033496-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17197/u24007
title: U24007 Using historical data to access the effects of trade shock on health and migrations, part II

description: Forskningsprojektet har två huvudsakliga syften: Det första syftet är att analysera hur förändringar i kvinnors förhandlingsmakt inom hushållet påverkar kvinnors och barns hälsa samt demografiska utfall, såsom äktenskapsålder, livslängd, skilsmässor och geografisk rörlighet. Som indikatorer används externa ekonomiska förändringar (chocker), exempelvis prisförändringar på könskodade varor (t.ex. smör och timmer) samt större förändringar i spannmålsmarknaden kopplade till handelspolitik och utbyggnad av infrastruktur.
Det andra syftet är att undersöka de ekonomiska och sociala faktorer som påverkade utvandringen, särskilt den transatlantiska migrationen till USA under senare delen av 1800-talet. Studien bidrar till förståelsen av vilka individer som migrerade, vilka som inte gjorde det, och hur migrationen påverkade hushåll och lokalsamhällen i ursprungslandet.
För att möjliggöra denna studie har data från databasen POPUM beställts, som omfattar individdata länkade på individ-, relations- och regionnivå från kyrkoböcker i församlingar inom Linköpingsregionen (LIN) samt uppgifter länkade på individ-, relations- och församlingsnivå från kyrkoböcker från församlingar i den norra inlandsregionen (NIL).
DOI: 10.15468/dl.93fgjn
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Peru",
 "TaxonKey is Topaza pyra"
 ]
}

 The dataset includes 198 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033497-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5mkfab
title: Occurrence Download

description: A dataset containing 513 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypsolebias"
 ]
}

 The dataset includes 513 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033498-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n96jb2
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Armatocereus riomajensis"
 ]
}

 The dataset includes 30 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033500-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5w37m81s
title: MassIVE MSV000099335 - Identification of ACBP as a potential target in ciliopathic obesity through multi-omics network analysis
title: Ciliopathies comprise a group of genetic disorders caused by disruptions in primary cilia function, with obesity as a clinical manifestation in some specific cases, such as Alstrom syndrome (AoS), caused by ALMS1 gene mutations. The link between cilia and lipid metabolism remains elusive, but growing evidence suggests the implication of a non-proficient autophagy. Autophagy affects the intra- and extracellular concentrations of acyl-CoA binding protein (ACBP), which can act as an obesogenic factor. Our study, encompassing multi-omics analyses, revealed early hepatic dyslipidemia, impaired autophagy, and hepatic ACBP accumulation in pre-symptomatic AoS mice. These conditions triggered a lipogenic response and changes in the bacterial microbiota, which were observed in adult AoS mice with obesity. Importantly, the reduction of excessive available ACBP by means of a neutralizing monoclonal antibody prevented weight gain and metabolic defects in Alms1-/- mice in an autophagy-independent manner. These findings suggest that ciliopathy (in particular AoS)-associated obesity can be treated by ACBP neutralization.
DOI: 10.5281/zenodo.17235943
title: Dataset: Self-assessed vs. reported digital competence among health students in Germany, Ukraine and Kazakhstan: a DigComp 2.2–based cross-sectional study.
DOI: 10.5281/zenodo.17235944
title: Dataset: Self-assessed vs. reported digital competence among health students in Germany, Ukraine and Kazakhstan: a DigComp 2.2–based cross-sectional study.
DOI: 10.15468/dl.2yfcd4
title: Occurrence Download

description: A dataset containing 1512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhinella spinulosa"
 ]
}

 The dataset includes 1512 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033502-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9kemge
title: Occurrence Download

description: A dataset listing the 18780 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is FishBase Database"
 ]
}

 The dataset's 18780 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033470-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgwtbj
title: Occurrence Download

description: A dataset containing 531 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is AMNH Bird Collection",
 "TaxonKey is Cardinalis cardinalis"
 ]
}

 The dataset includes 531 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033501-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17236052
title: Coleoptera taxa at LACM 2025-09-29
DOI: 10.5281/zenodo.17236053
title: Coleoptera taxa at LACM 2025-09-29
DOI: 10.5281/zenodo.11358761
title: A digital edition of the 389 Chorale Settings (Choralgesänge) by J.S. Bach

description: This repository has been made possible by Gertim Alberda, 
who 'manually' digitalized all the 389 Bach 4-voice chorales, 
as published by the Breitkopf edition 'nr. 3765'. 
For this he meticulously transcribed all the notes and lyrics of that edition, by using the music notation editor MuseScore (MS). 
He checked it against both BGA and NBA (Bach-Gesellschaft Ausgabe and Neue Bach-Ausgabe), 
if there was any reasonable doubt for it, and even found and improved a couple of mistakes that way (<10).
Solely for performance reasons, he also applied many hidden (grey) extras in MS to make the scores and its phrasing 
sound as realistic as possible; hidden fermatas, tempo changes, breath pauses, phrasing, note-cutbacks, etc. 
This was all done to 'humanize' the playback and make it sound like a real choir performance (without words), 
and given the technical limitations at that time (2016-2018). 
Also see the Info tab on his website.

The full corpus resides on Gertim Alberda's dedicated website. 
The scores there have synchronized play back (synthesized and human performances) available 
and can be downloaded in various formats (mscz/xml/midi/mp3/pdf). 
Here is an example of his playback page. 
His intention is to have only human performances available (YT videos and/or mp3's) for all the scores, 
but that is still an ongoing process 
(see the changelog on his website). 
He has agreed to share his MS files under a Creative Commons BY-NC-SA 4.0 license. 
The license prohibits the use of the scores for any commercial purpose, including the training of machine learning models for use in commercial products.

Contents

The "mother of all datasets" is available as two versions, each contained in a separate folder:



original_complete: Gertim Alberda's original MuseScore files converted to uncompressed 
MuseScore 3 format (.mscx)

vocal_parts_only: Alternative version of the dataset containing no instrumental parts.


Version history

See the GitHub releases.

Questions, Suggestions, Corrections, Bug Reports

Please create an issue and/or feel free to fork and submit pull requests.

License

Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License (CC BY-NC-SA 4.0).
DOI: 10.5281/zenodo.17236070
title: A digital edition of the 389 Chorale Settings (Choralgesänge) by J.S. Bach

description: This repository has been made possible by Gertim Alberda, 
who 'manually' digitalized all the 389 Bach 4-voice chorales, 
as published by the Breitkopf edition 'nr. 3765'. 
For this he meticulously transcribed all the notes and lyrics of that edition, by using the music notation editor MuseScore (MS). 
He checked it against both BGA and NBA (Bach-Gesellschaft Ausgabe and Neue Bach-Ausgabe), 
if there was any reasonable doubt for it, and even found and improved a couple of mistakes that way (<10).
Solely for performance reasons, he also applied many hidden (grey) extras in MS to make the scores and its phrasing 
sound as realistic as possible; hidden fermatas, tempo changes, breath pauses, phrasing, note-cutbacks, etc. 
This was all done to 'humanize' the playback and make it sound like a real choir performance (without words), 
and given the technical limitations at that time (2016-2018). 
Also see the Info tab on his website.

The full corpus resides on Gertim Alberda's dedicated website. 
The scores there have synchronized play back (synthesized and human performances) available 
and can be downloaded in various formats (mscz/xml/midi/mp3/pdf). 
Here is an example of his playback page. 
His intention is to have only human performances available (YT videos and/or mp3's) for all the scores, 
but that is still an ongoing process 
(see the changelog on his website). 
He has agreed to share his MS files under a Creative Commons BY-NC-SA 4.0 license. 
The license prohibits the use of the scores for any commercial purpose, including the training of machine learning models for use in commercial products.

Contents

The "mother of all datasets" is available as two versions, each contained in a separate folder:



original_complete: Gertim Alberda's original MuseScore files converted to uncompressed 
MuseScore 3 format (.mscx)

vocal_parts_only: Alternative version of the dataset containing no instrumental parts.


Version history

See the GitHub releases.

Questions, Suggestions, Corrections, Bug Reports

Please create an issue and/or feel free to fork and submit pull requests.

License

Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License (CC BY-NC-SA 4.0).
DOI: 10.15468/dl.khn3tt
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Clitoria arborea"
 ]
}

 The dataset includes 320 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033503-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13218767
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.17207090
title: Material for LORA paper (SGM raw data)

description: Streptococcus gallolyticus subsp. macedonicus (SGM) dataset

This dataset corresponds to the Streptococcus gallolyticus subsp. macedonicus (SGM) isolate used in the LORA paper to illustrate bacterial genome assembly from long-read sequencing data.

The raw sequencing data originate from the study available at:

🔗 PubMed 40810579

The corresponding BioProject is:🔗 PRJNA940176

Specifically, the dataset is associated with the SRA run:🔗 SRR24332397

In the original study, sequencing was performed on a PacBio Sequel II platform. The available files in the SRA project contain only raw subreads in FASTQ format. According to the authors, CCS reads were generated with a minimum of 3 passes and read quality (RQ) ≥ 99%.

For the LORA paper, we aimed to generate higher-quality HiFi reads using a minimum of 10 passes and RQ ≥ 99%, which required access to the original subreads BAM file. This BAM file was kindly provided by the authors and is shared here to ensure full reproducibility of our analysis.

We therefore provide:





The original PacBio subreads BAM file: m54091_201030_155628.subreads.bam (~42 GB)




The derived HiFi reads generated with 10 passes and RQ ≥ 99%:





hifi.ccs.bam




hifi.ccs.fastq.gz (for convenience)





These files enable users to reproduce the HiFi read generation and subsequent assembly steps described in the LORA publication.
DOI: 10.5281/zenodo.17207091
title: Material for LORA paper (SGM raw data)

description: Streptococcus gallolyticus subsp. macedonicus (SGM) dataset

This dataset corresponds to the Streptococcus gallolyticus subsp. macedonicus (SGM) isolate used in the LORA paper to illustrate bacterial genome assembly from long-read sequencing data.

The raw sequencing data originate from the study available at:

🔗 PubMed 40810579

The corresponding BioProject is:🔗 PRJNA940176

Specifically, the dataset is associated with the SRA run:🔗 SRR24332397

In the original study, sequencing was performed on a PacBio Sequel II platform. The available files in the SRA project contain only raw subreads in FASTQ format. According to the authors, CCS reads were generated with a minimum of 3 passes and read quality (RQ) ≥ 99%.

For the LORA paper, we aimed to generate higher-quality HiFi reads using a minimum of 10 passes and RQ ≥ 99%, which required access to the original subreads BAM file. This BAM file was kindly provided by the authors and is shared here to ensure full reproducibility of our analysis.

We therefore provide:





The original PacBio subreads BAM file: m54091_201030_155628.subreads.bam (~42 GB)




The derived HiFi reads generated with 10 passes and RQ ≥ 99%:





hifi.ccs.bam




hifi.ccs.fastq.gz (for convenience)





These files enable users to reproduce the HiFi read generation and subsequent assembly steps described in the LORA publication.
DOI: 10.15468/dl.vywdur
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Tulostoma brumale"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033505-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dv69c5
title: Occurrence Download

description: A dataset containing 7523 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jasus frontalis"
 ]
}

 The dataset includes 7523 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033507-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8acrbh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pternistis nobilis",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033508-250920141307145/datasets/export for details.
DOI: 10.15468/dl.8smgpp
title: Occurrence Download

description: A dataset containing 16704 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ghent University - Zoology Museum - Insect collection"
 ]
}

 The dataset includes 16704 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033509-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30239644
title: Dataset for ‘Flocking phase separation in inertial active matter’

description: Dataset for ‘Flocking phase separation in inertial active matter’
DOI: 10.6084/m9.figshare.30239644.v1
title: Dataset for ‘Flocking phase separation in inertial active matter’

description: Dataset for ‘Flocking phase separation in inertial active matter’
DOI: 10.15468/dl.2rsujh
title: Occurrence Download

description: A dataset containing 6580 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ghent University - Zoology Museum - Vertebrate collection"
 ]
}

 The dataset includes 6580 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033510-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rkvfa
title: Occurrence Download

description: A dataset containing 32215578 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (dbc07e15-c05b-4781-9ec3-59d331a9a4d8, 9d77fdeb-100f-4b29-98ad-4effdd824457, eac88d99-9f6c-4031-8fc4-8088f0e0dfe7, dc282b9d-8f3b-4197-b174-ba5272721a6f, d5ef14a1-5177-4547-9ce2-46d84a4214eb, d42b7e5d-a3e5-4fc2-8b3d-105336d70898, f072f648-b8a4-47a0-9e1c-89d790645b5a, e2e717bf-551a-4917-bdc9-4fa0f342c530, 2a7e3080-28a9-11dd-97cd-b8a03c50a862)"
 ]
}

 The dataset includes 32215578 records from 838 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033409-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ch6hz9
title: Occurrence Download

description: A dataset containing 38237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elaeagnus umbellata Thunb.",
 "Year 1970-2025"
 ]
}

 The dataset includes 38237 records from 320 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024168-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10726813
title: BOS Kemdikbud
DOI: 10.15468/dl.w6zm5z
title: Occurrence Download

description: A dataset containing 32261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-45 0,5 0,5 55,-45 55,-45 0))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Geodetic datum assumed WGS84, Continent derived from coordinates, Country derived from coordinates)",
 "OccurrenceStatus is Present",
 "TaxonKey is Tursiops truncatus (Montagu, 1821)",
 "Year 2000-2024"
 ]
}

 The dataset includes 32261 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024175-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxbn62
title: Occurrence Download

description: A dataset containing 36883164 species occurrences available in GBIF matching the query:
{
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 36883164 records from 4618 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024125-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufghdl
title: Occurrence Download

description: A dataset containing 729 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L.",
 "TaxonKey is Zygophyllum fabago L."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 729 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010340-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vp5ew8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-107.68112 7.93066,-72.31888 7.93066,-72.31888 22.06934,-107.68112 22.06934,-107.68112 7.93066))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Abronia campbelli Brodie & Savage, 1993"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063275-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwr55j
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alpinia galanga (L.) Willd.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 374 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035268-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrs7fb
title: Occurrence Download

description: A dataset containing 17978 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorex araneus Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 17978 records from 213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058496-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.