cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.eeftv4
title: Occurrence Download

description: A dataset containing 307585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.50958 36.6553,-4.44258 36.6553,-4.44258 36.69823,-4.50958 36.69823,-4.50958 36.6553))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 307585 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017493-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phwvmu
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Talauma hodgsonii Hook.f. & Thomson"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017519-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pdh29c
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is JPN.13_1",
 "Geometry POLYGON((77.72805 17.40812,173.27195 17.40812,173.27195 55.59188,77.72805 55.59188,77.72805 17.40812))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alisma canaliculatum A.Braun & C.D.Bouché"
 ]
}

 The dataset includes 69 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017516-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hubkf6
title: Occurrence Download

description: A dataset containing 42992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Motacilla flava Linnaeus, 1758)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 42992 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017517-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjmh94
title: Occurrence Download

description: A dataset containing 35500213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Oceania",
 "License is CC-BY 4.0",
 "Year 2020-2025"
 ]
}

 The dataset includes 35500213 records from 251 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017497-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15583693
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250603k Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250603k Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15583694
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250603k Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250603k Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.34740/kaggle/dsv/12046011
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.15570907
title: PlasAnn Database Collection v1.1.0

description: Comprehensive database collection for automated plasmid sequence annotation using PlasAnn. This dataset contains eight essential databases including BLAST protein databases, origin of transfer (oriT) sequences, replicon identification sequences, transposon databases, and RNA families (Rfam covariance models). 

The collection includes:- Database.csv: BLAST protein database in CSV format- Rfam.cm: RNA families covariance models with index files- orit.fna & oriT_TNcentral.fasta: Origin of transfer sequences- plasmidfinder.fasta: Replicon identification database  - transposon.fasta & tncentral_cleaned.fa: Transposon databases- oric.fna: Origin of replication sequences

Total compressed size: 192MB. Compatible with PlasAnn v1.1.0 and later.
DOI: 10.5281/zenodo.15583460
title: PlasAnn Database Collection v1.1.0

description: Comprehensive database collection for automated plasmid sequence annotation using PlasAnn. This dataset contains eight essential databases including BLAST protein databases, origin of transfer (oriT) sequences, replicon identification sequences, transposon databases, and RNA families (Rfam covariance models). 

The collection includes:- Database.csv: BLAST protein database in CSV format- Rfam.cm: RNA families covariance models with index files- orit.fna & oriT_TNcentral.fasta: Origin of transfer sequences- plasmidfinder.fasta: Replicon identification database  - transposon.fasta & tncentral_cleaned.fa: Transposon databases- oric.fna: Origin of replication sequences

Total compressed size: 192MB. Compatible with PlasAnn v1.1.0 and later.
DOI: 10.15468/dl.hn8jxb
title: Occurrence Download

description: A dataset containing 1317 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Opérations d'abattage de platanes infectés par le chancre coloré du platane le long du canal du Midi et ses annexes-JDD faune et flore canal du midi - Projet VNF 2015-2023"
 ]
}

 The dataset includes 1317 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017520-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2v75am
title: Occurrence Download

description: A dataset containing 1317 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Opérations d'abattage de platanes infectés par le chancre coloré du platane le long du canal du Midi et ses annexes-JDD faune et flore canal du midi - Projet VNF 2015-2023"
 ]
}

 The dataset includes 1317 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017521-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25037645.v7
title: Occurrence Records of Tropical Asian Butterflies: 1970 - 2024

description: Occurrence records of tropical Asia's butterflies collated from online databases and published literature. This dataset consists of 730,190 occurrence records for 3,752 species.Methods:We collected occurrence records for tropical Asian Papilionoidea (Lepidoptera: Nymphalidae, Papilionidae, Lycaenidae, Pieridae, Hesperiidae, Riodinidae)(-11.426 – 35.64 N, 67.588 – 174.990 E) for the years 1970-present. Records were extracted from the Global Biodiversity Information Facility on 15 April 2024. We included only presence records derived from human observation, preserved specimens, material samples, or literature, provided they had associated coordinates. We omitted all records with &gt;100,000 m coordinate uncertainty, so-called “fuzzy” taxon matches, and records for which the scientific name was missing or incomplete, unless nomenclature could be extracted using a BOLD identifier (boldsystems.org/). This resulted in a final number of GBIF records = 651,285.We also extracted data from the B2D2 Database of Butterflies for Borneo provided by JKH/the Darwin Initiative (n = 19,417) and a dataset for Bangladesh provided by SC (Chowdhury et al. 2021) (n = 18,278), and unpublished datasets from coauthors AN, DJL, LVV, TK, and YB (n = 13,993). To fill geographic gaps when all of these records were plotted, we conducted targeted searches of the published literature on Google Scholar (details below), resulting in an additional 27,217 records. Pre-1970 data were omitted where possible from all sources. Final binomial synonym harmonization, validation, and authority assignment were conducted by DJL using a taxonomic reference prepared by Gerardo Lamas (Lamas, 2015. Catalogue of the butterflies (Papilionidae). Available from the author.).For geographic regions with relatively few GBIF records (e.g., China, Myanmar, Thailand) and for species with &lt; 10 records, we conducted targeted literature searches using Google Scholar in English, simplified Chinese, and traditional Chinese (genus OR genus + species + country name). For all species records in published sources, we extracted coordinates, locality name, locality type (e.g., exact coordinates, city, national park, island, or province), country, and year of record (where available). If exact coordinates were not provided by the source, we used Google Earth Pro (v7.3.6.9345) to estimate the locality centroid for any record provided at the province level or below (e.g., national park or city). For records from islands ≤ 100 km in length or diameter (e.g, localities within the Philippines and Indonesia), we estimated the island or archipelago centroid. If a range of coordinates was provided (e.g., records from The Butterflies of Vietnam), coordinates within the range were chosen haphazardly by selecting a point within the range provided on Google Earth Pro. Data sources for all records are provided in the reference column (C) in Occurrence Records of Tropical Asian Butterflies: 1970-2024 and alphabetically in Data Sources for: Occurrence Records of Tropical Asian Butterflies: 1970-2024.
DOI: 10.5281/zenodo.10500831
title: S0 | SUSDAT | Merged NORMAN Suspect List: SusDat

description: This is the collection associated with list S0 SUSDAT on the NORMAN Suspect List Exchange.

https://www.norman-network.com/nds/SLE/ and https://www.norman-network.com/nds/susdat/

S0 SUSDAT Merged NORMAN Suspect List: SusDat

Interactive Data table (csv of latest version included in dataset here)

Compiled by Reza Aalizadeh, University of Athens, including RTI and toxicity values, support by Nikiforos Alygizakis, EI. Work in progress ... please report any issues!

UPDATED Jan 13, 2024 to latest version. (v0.4.1 fixed erroneous SMILES for NS00114302, v0.4.2 updated structural info for DTXSID90703694). June 18th, 2020 to include new 97K entries and all lists up to S70. March 3, 2020 to include Hazard and Exposure values from Stellan Fischer, KEMI. Nov 20, 2019 with InChIKey correction to Nov 1 version including new fragmentation information from Reza. DTXSIDs did not change (one truncated InChIKey fixed only). Update 6 Nov 2020: minor synonym changes to June 18 2020 files, reported by PubChem. Update 23 Feb 2021: removed two NA SMILES for SWVMFUJFAGAJCE-UHFFFAOYSA-N and JNYZDNIARSRXLF-GKMGLNRASA-N. Update 18 July 2022: fixed several SMILES (see pc-report-114791).
description: This is a massive collaborative effort with many contributions! This dataset merges other entries in this collection.
DOI: 10.5281/zenodo.10510477
title: S0 | SUSDAT | Merged NORMAN Suspect List: SusDat

description: This is the collection associated with list S0 SUSDAT on the NORMAN Suspect List Exchange.

https://www.norman-network.com/nds/SLE/ and https://www.norman-network.com/nds/susdat/

S0 SUSDAT Merged NORMAN Suspect List: SusDat

Interactive Data table (csv of latest version included in dataset here)

Compiled by Reza Aalizadeh, University of Athens, including RTI and toxicity values, support by Nikiforos Alygizakis, EI. Work in progress ... please report any issues!

UPDATED Jan 13, 2024 to latest version (edited Jan 14). For the remaining curation notes, see "SusDat_curation_notes.txt". 
description: This is a massive collaborative effort with many contributions! This dataset merges other entries in this collection.
DOI: 10.5281/zenodo.15583645
title: S0 | SUSDAT | Merged NORMAN Suspect List: SusDat

description: This is the collection associated with list S0 SUSDAT on the NORMAN Suspect List Exchange.

https://www.norman-network.com/nds/SLE/ and https://www.norman-network.com/nds/susdat/

S0 SUSDAT Merged NORMAN Suspect List: SusDat

Interactive Data table (csv of latest version included in dataset here)

Compiled by Reza Aalizadeh, University of Athens, including RTI and toxicity values, support by Nikiforos Alygizakis, EI. Work in progress ... please report any issues!

UPDATED Jun 3, 2025 to latest version. For the remaining curation notes, see "SusDat_curation_notes.txt". 
description: This is a massive collaborative effort with many contributions! This dataset merges other entries in this collection.
DOI: 10.5281/zenodo.2664078
title: S0 | SUSDAT | Merged NORMAN Suspect List: SusDat

description: This is the collection associated with list S0 SUSDAT on the NORMAN Suspect List Exchange.

https://www.norman-network.com/?q=suspect-list-exchange

S0

SUSDAT

<strong>Merged NORMAN Suspect List: SusDat</strong>

Interactive Data table (csv of latest version included in dataset here)

CompTox SUSDAT List

MS-ready InChIKeys (1/03/2018) 

A merged list of &gt;40,000 structures from suspect lists. See interactive version. Compiled by Reza Aalizadeh, University of Athens, including RTI and toxicity values, support by Nikiforos Alygizakis, EI. <em>Work in progress ... please report any issues!</em>
description: This is a massive collaborative effort with many contributions! This dataset merges other entries in this collection.
DOI: 10.5281/zenodo.3695732
title: S0 | SUSDAT | Merged NORMAN Suspect List: SusDat

description: This is the collection associated with list S0 SUSDAT on the NORMAN Suspect List Exchange. UPDATED March 3, 2020 to include Hazard and Exposure values from Stellan Fischer, KEMI. Nov 20, 2019 with InChIKey correction to Nov 1 version including new fragmentation information from Reza. DTXSIDs did not change (one truncated InChIKey fixed only) https://www.norman-network.com/nds/SLE/ and https://www.norman-network.com/nds/susdat/ S0 SUSDAT <strong>Merged NORMAN Suspect List: SusDat</strong> Interactive Data table (csv of latest version included in dataset here) susdat_2019-11-01-update4 XLSX and CSV versions are the original files now updated to contain Hazard and Exposure scores from Stellan Fischer NORMANSusDat_20Nov2019.csv is the corresponding MetFrag local CSV file, now also with Hazard and Exposure scores from Stellan Fischer. The InChIKey and DTXSID files support suspect screening via MetFrag and CompTox (https://comptox.epa.gov/dashboard/chemical_lists/susdat) A merged list of &gt;68,000 structures from suspect lists. See interactive version. Compiled by Reza Aalizadeh, University of Athens, including RTI and toxicity values, support by Nikiforos Alygizakis, EI. <em>Work in progress ... please report any issues!</em>
description: This is a massive collaborative effort with many contributions! This dataset merges other entries in this collection.
DOI: 10.5281/zenodo.3900203
title: S0 | SUSDAT | Merged NORMAN Suspect List: SusDat

description: This is the collection associated with list S0 SUSDAT on the NORMAN Suspect List Exchange. UPDATED June 18th, 2020 to include new 97K entries and all lists up to S70. March 3, 2020 to include Hazard and Exposure values from Stellan Fischer, KEMI. Nov 20, 2019 with InChIKey correction to Nov 1 version including new fragmentation information from Reza. DTXSIDs did not change (one truncated InChIKey fixed only) https://www.norman-network.com/nds/SLE/ and https://www.norman-network.com/nds/susdat/ S0 SUSDAT <strong>Merged NORMAN Suspect List: SusDat</strong> Interactive Data table (csv of latest version included in dataset here) NORMANSusDat_20Nov2019.csv is the corresponding MetFrag local CSV file, now also with Hazard and Exposure scores from Stellan Fischer. Update to June 2020 set in progress. The InChIKey and DTXSID files support suspect screening via MetFrag and CompTox (https://comptox.epa.gov/dashboard/chemical_lists/susdat) A merged list of &gt;97,000 structures from suspect lists. See interactive version. Compiled by Reza Aalizadeh, University of Athens, including RTI and toxicity values, support by Nikiforos Alygizakis, EI. <em>Work in progress ... please report any issues!</em>
description: This is a massive collaborative effort with many contributions! This dataset merges other entries in this collection.
DOI: 10.5281/zenodo.4249026
title: S0 | SUSDAT | Merged NORMAN Suspect List: SusDat

description: This is the collection associated with list S0 SUSDAT on the NORMAN Suspect List Exchange. UPDATED June 18th, 2020 to include new 97K entries and all lists up to S70. March 3, 2020 to include Hazard and Exposure values from Stellan Fischer, KEMI. Nov 20, 2019 with InChIKey correction to Nov 1 version including new fragmentation information from Reza. DTXSIDs did not change (one truncated InChIKey fixed only). Update 6 Nov 2020: minor synonym changes to June 18 2020 files, reported by PubChem. https://www.norman-network.com/nds/SLE/ and https://www.norman-network.com/nds/susdat/ S0 SUSDAT <strong>Merged NORMAN Suspect List: SusDat</strong> Interactive Data table (csv of latest version included in dataset here) NORMANSusDat_20Nov2019.csv is the corresponding MetFrag local CSV file, now also with Hazard and Exposure scores from Stellan Fischer. Update to June 2020 set in progress. The InChIKey and DTXSID files support suspect screening via MetFrag and CompTox (https://comptox.epa.gov/dashboard/chemical_lists/susdat) A merged list of &gt;97,000 structures from suspect lists. See interactive version. Compiled by Reza Aalizadeh, University of Athens, including RTI and toxicity values, support by Nikiforos Alygizakis, EI. <em>Work in progress ... please report any issues!</em>
description: This is a massive collaborative effort with many contributions! This dataset merges other entries in this collection.
DOI: 10.5281/zenodo.4558070
title: S0 | SUSDAT | Merged NORMAN Suspect List: SusDat

description: This is the collection associated with list S0 SUSDAT on the NORMAN Suspect List Exchange. UPDATED June 18th, 2020 to include new 97K entries and all lists up to S70. March 3, 2020 to include Hazard and Exposure values from Stellan Fischer, KEMI. Nov 20, 2019 with InChIKey correction to Nov 1 version including new fragmentation information from Reza. DTXSIDs did not change (one truncated InChIKey fixed only). Update 6 Nov 2020: minor synonym changes to June 18 2020 files, reported by PubChem. Update 23 Feb 2021: removed two NA SMILES for SWVMFUJFAGAJCE-UHFFFAOYSA-N and JNYZDNIARSRXLF-GKMGLNRASA-N. https://www.norman-network.com/nds/SLE/ and https://www.norman-network.com/nds/susdat/ S0 SUSDAT <strong>Merged NORMAN Suspect List: SusDat</strong> Interactive Data table (csv of latest version included in dataset here) NORMANSusDat_20Nov2019.csv is the corresponding MetFrag local CSV file, now also with Hazard and Exposure scores from Stellan Fischer. Update to June 2020 set in progress. The InChIKey and DTXSID files support suspect screening via MetFrag and CompTox (https://comptox.epa.gov/dashboard/chemical_lists/susdat) A merged list of &gt;97,000 structures from suspect lists. See interactive version. Compiled by Reza Aalizadeh, University of Athens, including RTI and toxicity values, support by Nikiforos Alygizakis, EI. <em>Work in progress ... please report any issues!</em>
description: This is a massive collaborative effort with many contributions! This dataset merges other entries in this collection.
DOI: 10.5281/zenodo.5871701
title: S0 | SUSDAT | Merged NORMAN Suspect List: SusDat

description: This is the collection associated with list S0 SUSDAT on the NORMAN Suspect List Exchange. UPDATED Jan 18, 2022 to latest version. June 18th, 2020 to include new 97K entries and all lists up to S70. March 3, 2020 to include Hazard and Exposure values from Stellan Fischer, KEMI. Nov 20, 2019 with InChIKey correction to Nov 1 version including new fragmentation information from Reza. DTXSIDs did not change (one truncated InChIKey fixed only). Update 6 Nov 2020: minor synonym changes to June 18 2020 files, reported by PubChem. Update 23 Feb 2021: removed two NA SMILES for SWVMFUJFAGAJCE-UHFFFAOYSA-N and JNYZDNIARSRXLF-GKMGLNRASA-N. https://www.norman-network.com/nds/SLE/ and https://www.norman-network.com/nds/susdat/ S0 SUSDAT <strong>Merged NORMAN Suspect List: SusDat</strong> Interactive Data table (csv of latest version included in dataset here) The InChIKey and DTXSID files support suspect screening via MetFrag and CompTox (https://comptox.epa.gov/dashboard/chemical_lists/susdat) A merged list of &gt;97,000 structures from suspect lists. See interactive version. Compiled by Reza Aalizadeh, University of Athens, including RTI and toxicity values, support by Nikiforos Alygizakis, EI. <em>Work in progress ... please report any issues!</em>
description: This is a massive collaborative effort with many contributions! This dataset merges other entries in this collection.
DOI: 10.5281/zenodo.5873975
title: S0 | SUSDAT | Merged NORMAN Suspect List: SusDat

description: This is the collection associated with list S0 SUSDAT on the NORMAN Suspect List Exchange. UPDATED Jan 18, 2022 to latest version. (v0.4.1 fixed erroneous SMILES for NS00114302). June 18th, 2020 to include new 97K entries and all lists up to S70. March 3, 2020 to include Hazard and Exposure values from Stellan Fischer, KEMI. Nov 20, 2019 with InChIKey correction to Nov 1 version including new fragmentation information from Reza. DTXSIDs did not change (one truncated InChIKey fixed only). Update 6 Nov 2020: minor synonym changes to June 18 2020 files, reported by PubChem. Update 23 Feb 2021: removed two NA SMILES for SWVMFUJFAGAJCE-UHFFFAOYSA-N and JNYZDNIARSRXLF-GKMGLNRASA-N. https://www.norman-network.com/nds/SLE/ and https://www.norman-network.com/nds/susdat/ S0 SUSDAT <strong>Merged NORMAN Suspect List: SusDat</strong> Interactive Data table (csv of latest version included in dataset here) The InChIKey and DTXSID files support suspect screening via MetFrag and CompTox (https://comptox.epa.gov/dashboard/chemical_lists/susdat) A merged list of &gt;97,000 structures from suspect lists. See interactive version. Compiled by Reza Aalizadeh, University of Athens, including RTI and toxicity values, support by Nikiforos Alygizakis, EI. <em>Work in progress ... please report any issues!</em>
description: This is a massive collaborative effort with many contributions! This dataset merges other entries in this collection.