cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cf94tj
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registros de pulpo común (Octopus insularis) en cinco localidades del Caribe colombiano"
 ]
}

 The dataset includes 87 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0180401-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v378fm
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentiana purdomii C.Marquand"
 ]
}

 The dataset includes 115 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200089-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mxgec
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geophis immaculatus Downs, 1967"
 ]
}

 The dataset includes 62 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293014-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74jcf4
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bousigonia mekongensis Pierre"
 ]
}

 The dataset includes 160 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098638-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qdlwo
title: Occurrence Download

description: A dataset containing 18155 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Macroalgal collection of National Museum of Nature and Science (TNS)"
 ]
}

 The dataset includes 18155 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011933-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehkr6w
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moehringia glaucovirens Bertol."
 ]
}

 The dataset includes 113 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042564-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z68ntp
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bouchetia procumbens DC. ex Dunal"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098632-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nkkgz
title: Occurrence Download

description: A dataset containing 15676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-980.0",
 "Geometry POLYGON((-132.85782 12.7656,-54.95962 12.7656,-54.95962 60.33517,-132.85782 60.33517,-132.85782 12.7656))",
 "TaxonKey is Alliaria petiolata (M.Bieb.) Cavara & Grande"
 ]
}

 The dataset includes 15676 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074897-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cevbqu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liothrips kuwayamai (Moulton, 1928)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0309072-210914110416597/datasets/export for details.
DOI: 10.34816/ifao.archives.120711
title: NÉCROPOLE THÉBAINE_nu_2008_08844

description: Référence : nu_2008_08844<br />Site : Cheikh Abd el-Gourna<br />Secteur : Chapelle (TT_100 (Rekhmirê)); TT_100 (Rekhmirê)<br />Type : photographie<br />
DOI: 10.15468/dl.d6j2k6
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bousigonia angustifolia Pierre"
 ]
}

 The dataset includes 68 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098637-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7prg28
title: Occurrence Download

description: A dataset listing the 5 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Sea turtle sightings in Taiwan | 台灣海龜目擊紀錄"
 ]
}

 The dataset's 5 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0394908-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.120712
title: NÉCROPOLE THÉBAINE_nu_2008_08843

description: Référence : nu_2008_08843<br />Site : Cheikh Abd el-Gourna<br />Secteur : Chapelle (TT_100 (Rekhmirê)); TT_100 (Rekhmirê)<br />Type : photographie<br />
DOI: 10.15468/dl.5csnf5
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.33283 12.38253,-71.34107 12.34229,-71.28751 12.31411,-71.25455 12.28191,-71.22983 12.23762,-71.19276 12.17722,-71.14332 12.09264,-71.13508 12.03221,-71.17216 12.00803,-71.20924 11.99191,-71.27103 11.95564,-71.33695 11.94758,-71.36167 11.8992,-71.36579 11.85486,-71.42347 11.8226,-71.40699 11.7621,-71.34931 11.71773,-71.17216 11.70563,-70.9538 11.79034,-70.88377 11.93145,-70.84257 12.15709,-70.87276 12.2748,-70.98811 12.45187,-71.18587 12.53232,-71.29298 12.47601,-71.33283 12.38253))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Actinopterygii"
 ]
}

 The dataset includes 35 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304200-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.120713
title: NÉCROPOLE THÉBAINE_nu_2008_08840

description: Référence : nu_2008_08840<br />Site : Cheikh Abd el-Gourna<br />Secteur : Chapelle (TT_100 (Rekhmirê)); TT_100 (Rekhmirê)<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.120714
title: NÉCROPOLE THÉBAINE_nu_2008_08839

description: Référence : nu_2008_08839<br />Site : Cheikh Abd el-Gourna<br />Secteur : Chapelle (TT_100 (Rekhmirê)); TT_100 (Rekhmirê)<br />Type : photographie<br />
DOI: 10.15468/dl.b75nfh
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bouteloua alamosana Vasey"
 ]
}

 The dataset includes 151 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098639-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.120715
title: NÉCROPOLE THÉBAINE_nu_2008_08842

description: Référence : nu_2008_08842<br />Site : Cheikh Abd el-Gourna<br />Secteur : Chapelle (TT_100 (Rekhmirê)); TT_100 (Rekhmirê)<br />Type : photographie<br />
DOI: 10.15468/dl.c99qse
title: Occurrence Download

description: A dataset containing 798189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is IND.29_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 798189 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119685-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gb8qrv
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micropechis ikaheca Lesson, 1830"
 ]
}

 The dataset includes 164 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292996-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.120716
title: NÉCROPOLE THÉBAINE_nu_2008_08841

description: Référence : nu_2008_08841<br />Site : Cheikh Abd el-Gourna<br />Secteur : Chapelle (TT_100 (Rekhmirê)); TT_100 (Rekhmirê)<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.120717
title: NÉCROPOLE THÉBAINE_nu_2008_08838

description: Référence : nu_2008_08838<br />Site : Cheikh Abd el-Gourna<br />Secteur : Chapelle (TT_100 (Rekhmirê)); TT_100 (Rekhmirê)<br />Type : photographie<br />
DOI: 10.15468/dl.a9xkh2
title: Occurrence Download

description: A dataset containing 910 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bouteloua americana (L.) Scribn."
 ]
}

 The dataset includes 910 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098640-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.120718
title: NÉCROPOLE THÉBAINE_nu_2008_08834

description: Référence : nu_2008_08834<br />Site : Cheikh Abd el-Gourna<br />Secteur : Chapelle (TT_100 (Rekhmirê)); TT_100 (Rekhmirê)<br />Type : photographie<br />
DOI: 10.15468/dl.dpgqxe
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus irregularis Laurent, 1986"
 ]
}

 The dataset includes 56 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293016-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jfx6r
title: Occurrence Download

description: A dataset containing 1350 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bouteloua chondrosioides (Kunth) Benth. ex S.Watson"
 ]
}

 The dataset includes 1350 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098645-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wu56p
title: Occurrence Download

description: A dataset containing 2254 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Millettia pinnata (L.) Panigrahi"
 ]
}

 The dataset includes 2254 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304206-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdkdev
title: Occurrence Download

description: A dataset containing 477376 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corylus avellana L."
 ]
}

 The dataset includes 477376 records from 873 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011933-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15454/a2jjfg
title: Dendrochronology of 661 Quercus robur for SPONFOREST Project

description: 15 spontaneous stands of pedunculate oak were sampled in the Landes region close to Bordeaux. In each stand, all the oaks were cored with an increment borer. The 661 cores were measured to get series of annual growth. The ring-width data were cross dated and standardized with RCS method. The dataset is composed of two files: (1) description of 661 trees, (2) growth data of 21461 tree rings.
DOI: 10.15468/dl.qu7sz2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cacosternum australis Channing, Schmitz, Burger & Kielgast, 2013",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -23.2724,25.1306 -24.0715,25.5395 -24.0715,25.5395 -23.2724))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032074-250525065834625/datasets/export for details.
DOI: 10.15454/dfiafe
title: Composting of date palm residues to serve the circular agriculture in oases

description: Dry leaves of date palms are a by-product of date cultivation commonly abandoned in oases. They cause fire hazard when burned while they could contribute to soil organic matter when recycled. We experimented various processes of composting to improve understanding and support decision-making. A composting experiment in windrows was conducted at the experimental station of the National Institute of Agronomic Research (INRA) of Errachidia in Morocco. Four treatments were compared in triplicates: dry leaves of date palm added or not with sheep manure and rock phosphate. Initial windrow volumes were identical (5 m3). Initial masses ranged from 1477 to 1739 kg. After 136 days and two turnings, final masses ranged between 572 and 911 kg. Manure addition increased compost temperature by 20°C. Nitrogen loss was negligible even in treatments with manure. Rock phosphate addition did not significantly affect the nitrogen or organic matter losses. Results can be used to discuss recycling options in various annual or perennial cropping systems conducted nearby date palm trees in oases in the framework of circular agriculture.
DOI: 10.15454/be3jza
title: Metabarcoding data analysis of foliar fungal communities associated with 84 woody species.

description: These metabarcoding data describe foliar fungal communities collected on 84 woody species planted at the Arboretum des Barres (Nogent-sur-Vernisson, France, 47.83819 N , 2.75792 E). Following fungal ITS1 amplification with ITS1F-ITS2 primers, two runs of single-end 454 sequencing were performed (Roche GS Junior). In total, 90 samples were sequenced : 88 environmental samples (i.e. leaf samples), one technical replicate corresponding to the same leaf sample (collected on Fagus sylvatica) sequenced twice, and one negative control for DNA extraction. The 88 environmental samples correspond to 84 samples collected on trees in the Arboretum des Barres and 4 samples simultaneously collected on trees in the Pierroton Iresearch station (INRAe, Cestas, France, 44.73734 N ; 0.77492 W). Bioinformatics scripts as well as raw and filtered ASV Tables are provided. Protocols and preliminary analyses are described in Quention Baillavoine's Master thesis (https://corinnevacher.files.wordpress.com/2014/11/baillavoine-quentin-rapport-de-stage-m2-fet.pdf).
DOI: 10.15454/aoz7ji
title: Microsatellite data from: Evolutionary history of a Scottish harbour seal population

description: A total of 93 harbour seal samples from Moray Firth (North East Scotland ) were genotyped with 25 microsatellite markers using fluorescent labelled primers (see Appendix A, B from Nikolic et al. 2020). PCR amplification was carried out using Applied Biosystems 2720 Thermal Cycler. The dataset also contains biological (ex. length, age) and geographical information per individual. Usage Notes: Microsatellite Data. Data obtained in the laboratory from samples collected in the field.
DOI: 10.15454/bicrfx
title: Interest of phenomic prediction as an alternative to genomic prediction in grapevine - data and R scripts

description: Data and script analysis for phenomic and genomic predictions in grapevine.
DOI: 10.15454/d4mjmj
title: Phenological data of 28 apple tree varieties and 4 pear tree varieties in a French orchard of Loire Valley since 2004

description: These datasets contain phenological observations on 28 apple varieties or mutants and 4 pear varieties evaluated since 2004. These data come from observations carried out since 2004 on the two sites of the Horticulture Experimental Facility based in the Loire Valley in France. These data sets are evolving and enriched each year.
DOI: 10.15454/c1f8mo
title: QTL mapping of modeled metabolic fluxes reveals gene variants impacting yeast central carbon metabolism

description: The yeast Saccharomyces cerevisiae is an attractive industrial host for the production of a wide range of bulk and fine chemicals, such as biofuels, flavors and fragrances or pharmaceutical products. The intermediates of yeast central carbon metabolism (CCM) are the building blocks of these biosynthetic pathways. Their production kinetics and intracellular availability depend on the balance of numerous single intracellular reactions, which together form intracellular fluxes. Therefore, efficient product biosynthesis is influenced by the distribution of these fluxes. We recently demonstrated great variations in the metabolic fluxes of CCM between yeast strains of different origins. However, due to the complexity of flux regulatory mechanisms, we have a limited understanding of how fluxes are modulated and even less knowledge about the genetic basis of variations in flux distributions. In this study, we investigated the potential of quantitative trait locus (QTL) mapping to elucidate the genetic variations responsible for differences in metabolic flux distributions (fQTL) using a population of 130 F2-segregants from a cross of two wine yeast strains. Intracellular metabolic fluxes were estimated by constraint-based modeling and used as quantitative phenotypes, and differences in fluxes were linked to genomic variations in the progeny population. Using this approach, we detected four fQTLs that influence metabolic pathways. The molecular dissection of these QTLs revealed the contribution of two allelic gene variants, PDB1 and VID30, which have an influence on glycolysis, glycerol synthesis, ethanol synthesis, tricarboxylic acid cycle fluxes and transport and excretion of main metabolites. The elucidation of genetic determinants influencing metabolic fluxes, as reported here for the first time, creates new opportunities for the development of strains with optimized metabolite profiles for various applications using metabolic engineering or breeding strategies.
DOI: 10.15454/cygfqb
title: Dataset for genetic and transcriptome variation of ovary tomato response to heat stress

description: Six tomato accessions with contrasted responses to high temeprature (HT) were selected and the ovary transcriptomes of plants grown under HT and control conditions were analyzed and differentially expressed genes identified. Plant Materials : For RNAseq study, six accessions were used, three tolerant to heat stress : Cervil (one of the parents of the MAGIC population), the F1 hybrid Cervil x Levovil (CerLev) and Nagcarlan, which is known as tolerant to heat stress (Xu et al 2017a), and three susceptible to heat stress, chosen among the MAGIC lines (MT102, MT54) and their parental lines (Levovil). Plants were grown in greenhouse in Avignon in 2018, in the same conditions as the core collection (control and HT conditions) described in Bineau et al (submitted). RNA extraction Ovaries were collected on flowers from the six accessions just before petals fully open (1-2 days after pollination) and immediately frozen in liquid nitrogen. Sampling was performed over three weeks, each week sample corresponding to a biological replicate. The three biological replicates per accession (corresponding to a minimum of 5 ovaries) were separately ground to get biological replicates. RNA was extracted using the Spectrum Plant Total RNA kit (Sigma‐Aldrich, Saint‐Quentin Fallavier, France) following the manufacturer's protocol and treated with On‐Column DNase I Digestion Set (Sigma‐Aldrich) to remove any remaining genomic DNA. RNA purity and integrity were assessed on a NanoDrop 1000 spectrophotometer (Thermo Fisher Scientific, Illkirch, France) and a Bioanalyser 2100 spectrophotometer (Agilent Technologies, Les Ulis, France), respectively. RNAseq Library construction and sequencing (100 bp pair end) were subcontracted to BGI. The minimal, maximal, and average amounts of raw sequencing data per sample were estimated to be 12.2 × 10⁹ bp, 13.6 × 10⁹ bp, and 12.56 × 10⁹ bp, respectively. Raw sequencing data quality was assessed using FASTQC v.0.11.8 software (Andrews, 2011) and aggregated with MULTIQC v.1.7 (Ewels et al., 2016). Sequences were trimmed using FASTP v.0.20.0 (Chen et al., 2018). On average, cleaning steps removed 4.06% of the data (min = 4.04%, max = 4.08%). Remaining data were aligned to the tomato reference genome (Heinz 1706, v.4.0) using STAR v.2.6.1b with two passes and providing the tomato gene model (annotation v4.1) to support the mapping process. Alignments were filtered to keep only concordantly mapped reads using Samtools v.1.9 (Li et al., 2009) and read counts per gene were generated for each library using HTSEQ v.0.11.2 (Anders et al., 2015). On average, 94.8% of read pairs were uniquely mapped per library (min = 91.5%, max = 96.2%) and 2.1% multi-mapped (min = 1.7%, max = 2.7%). The differential gene analysis was performed using the workspace DiCoExpres (Lambert et al, 2020). For further explanations, we refer to the manual of DiCoExpress. The Dataset contains the raw data and R script used and the main results provided by the analysis. For specific contrast for one accession, the scripts must be run again.
DOI: 10.15454/df0brl
title: Microbial community dispersal in sourdough - data and scripts

description: Metabarcoding and numbering data of sourdough and flour from 46 bakers and farmer bakers. Scripts analyze the raw reads and generate statistical tests and figures.
DOI: 10.15454/fd86m2
title: Data from: Europe as a bridgehead in the worldwide invasion history of the grapevine downy mildew, Plasmopara viticola

description: This dataset archive includes analysis files for the paper "Europe as a bridgehead in the worldwide invasion history of the grapevine downy mildew, Plasmopara viticola", deposited on biorxiv (https://doi.org/10.1101/2020.09.22.307678 ) and in press in the journal Current Biology (https://doi.org/10.1016/j.cub.2021.03.009). Archives contain README files with important information, ignore them at your own risk. If you have any question, request or commentary, you can email the dataverse contact. See the README files for further details and also Fontaine et al (2021, Current Biology) for all the methodological details.