DOI: 10.6073/pasta/a45c0c0cf3dcd48564a909a8dfa0dad4
title: Stream metabolism data for core sites in Gwynns Falls: high temporal frequency (5-10min resolution) measurements of dissolved oxygen, photosynthetically active radiation, temperature, discharge and depth.

description: An ongoing component of the Baltimore urban long-term ecological research (LTER) project (Baltimore Ecosystem Study, BES) is the use of the watershed approach and monitoring of stream water quality to evaluate the integrated ecosystem functioning of Baltimore. The LTER research has focused on the Gwynns Falls watershed, which spans a gradient from highly urban, urban-residential, and suburban zones. In addition, a forested watershed serves as a reference. The long-term sampling network includes four longitudinal sampling sites along the Gwynns Falls mainstem, as well as several small (40-100 ha) watershed within or near the Gwynns Falls, providing data on water quality in different land use zones of the watersheds. Each study site is continuously monitored for discharge and is sampled weekly for water chemistry. Those data are available elsewhere on the BES website. 
      
      
          We are interested in studying the bioreactivity of streams in our watersheds in an attempt to quantify how streams themselves may affect or be affected by water quality. To assess the bioreactivity of streams, we measure whole stream metabolism, which is an integrative metric which quantifies the production and consumption of energy by a stream ecosystem. Stream metabolism represents how energy is created (primary production) and used (respiration) within a stream; it can be thought of as a stream breathing, with primary production being similar to an inhale, and respiration as an exhale. 
      
      
          We are monitoring stream metabolism in each of our long-term water quality monitoring stations by deploying sensors that record dissolve oxygen and temperature of the stream every five minutes, and we also have deployed light sensors to record irradiance every five minutes at long-term BES water chemistry streams, which is needed for metabolism modeling. In addition, each dissolved oxygen sensor is located near a USGS gage which estimates discharge every 15 minutes. We used USGS manual discharge estimations linked with channel geometry measurements to develop a unique discharge-stream depth relationship (contact AJ Reisinger for details). The combination of the USGS discharge data and our discharge-depth relationship allows us to estimate average daily discharge and depth. We have included these data as well as dissolved oxygen, temperature, and PAR, allowing metabolism to be scaled on an areal basis. Primary production and respiration of streams integrate all biological activity in a stream, and therefore are good metrics to assess the state of an ecosystem. These metrics can also be used to predict other ecosystem functions.
      
      
          This dataset includes all information needed for whole-stream metabolism modeling using the streammetabolizer R package. Data will updated as it becomes available from the core stream study sites (see http://md.water.usgs.gov/BES for a detailed description of these sites).
      
      
          Codes and abbreviations
      
          1 - pobr - Pond Branch forested reference site - Forested reference. Preliminary monitoring from 10/24/2012 - 11/12/2012. Monitored continuously for metabolism beginning February 2016.
      
          2 - barn - Baisman Run at Ivy Hill Road - Suburban unsewered. Preliminary monitoring from 10/24/2012 - 11/13/2012. Monitored continuously for metabolism beginning February 2016.
      
          3 - drkr - Dead Run at Kernan Drive - Urban. Preliminary monitoring 10/24/2012 - 11/29/2012. Monitored continuously for metabolism beginning February 2016.
      
          4 - gfgb - Gwynns Falls at Gwynnbrook Avenue (Delight) - Suburban. Preliminary monitoring 10/24/2012 - 11/11/2012. Monitored continuously for metabolism beginning February 2016.
      
          5 - gfcp - Gwynns Falls at Caroll Park - Urban. Preliminary monitoring 10/24/2014 - 11/29/2012. Monitored for metabolism continuously beginning February 2016.
      
          6 - gfgl - Gwynns Falls at Glyndon - Suburban. Monitored continuously for metabolism beginning February 2016.
      
          7 - gfvn - Gwynns Falls at Villanova - Urban. Monitored continuously for metabolism beginning February 2016.
      
          8 - mcdn - Gwynns Falls Tributary at McDonogh - Agricultural. Monitored for metabolism continuously beginning February 2016.
      
      
          Note: Data collected prior to 2016 are formatted to be used in the BASE metabolism package in R (see Grace et al. 2015 in Limnology and Oceanography). Data collected beginning in February 2016 are formatted to be used in the streammetabolizer metabolism package in R (see Appling et al. 2018 in Journal of Geophysical Research: Biogeosciences)
      
      
          Column,Column Name,Variable-if different than Column Name (units)
      
          A,Site, Site Name
      
          B,Date, Date (mm/dd/yyyy)
      
          C,Time, Localt time (hh:mm)
      
          D,I, PAR (umol/m2/s)
      
          E,tempC, Temperature (deg C)
      
          F,DO.meas, measured dissolved oxygen concentration (mg/L)
      
          G,DO.sat, concentration of dissolved oxygen at 100% saturation with the atmosphere (mg/L)
      
          H. atmo.pressure, atmospheric pressure (atm) - if this isn�t known it can be estimated based upon elevation
      
          H,salinity, salinity - this should be zero for freshwater
      
          I,Q, discharge (L/s)
      
          J,D, depth (m)
      
      
      
          Methods: 
      
      
          Dissolved oxygen and temperature are logged every five minutes on a miniDOT (PME, Inc.) deployed at a representative location in the stream. Irradiance (I) is recorded as photosynthetically active radiation (PAR) using either Odyssey loggers (Dataflow Systems Limited, Christchurch, NZ) or HOBO Pendant Temperature/Light loggers (Onset Computer Corporation, Bourne, MA, USA) deployed at a representative location near the stream.  Elevation is estimated using Google Earth. 
      
      
          Average daily discharge is downloaded from USGS gauging stations located at each individual study site. We developed site-specific depth-discharge relationships using USGS manual discharge measurements with channel geometry. These specific relationships are then used to back-calculate average stream depth from daily average Q downloaded from USGS.
      
      
          Beginning in 2016, miniDOTs were deployed continuously at each long-term BES water chemistry site. During continuous deployment, miniDOTs are cleaned weekly, and downloaded quarterly. miniDOTs are calibrated annually per manufacturer recommendation. miniDOTs are logged together in supersaturated water for one hour prior to and after deployment. This equilibration period allows for any drift correction over the course of the deployment.