cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5873332
title: FIB cleaned an reshaped Electrostatic Electron Vortex Beam Generators

description: Here are collected the SEM images (top-view and tilted-view) of the Electrostatic Electron Vortex Beam Generators fabricated at the CNR-IMM in Bologna and then cleaned and reshaped by FIB milling at the CNR-NANO in Modena. Different shapes of the main paired needles have been fabricated to try to optimize the reproduction the ideal phase profile as reported in https://doi.org/10.1103/PhysRevResearch.2.013185
DOI: 10.5281/zenodo.5873331
title: FIB cleaned an reshaped Electrostatic Electron Vortex Beam Generators

description: Here are collected the SEM images (top-view and tilted-view) of the Electrostatic Electron Vortex Beam Generators fabricated at the CNR-IMM in Bologna and then cleaned and reshaped by FIB milling at the CNR-NANO in Modena. Different shapes of the main paired needles have been fabricated to try to optimize the reproduction the ideal phase profile as reported in https://doi.org/10.1103/PhysRevResearch.2.013185
DOI: 10.6084/m9.figshare.16510344
title: Distribution, organization and expression of genes concerned with anaerobic lactate-utilization in human intestinal bacteria

description: Supplementary Material for 'Distribution, organization and expression of genes concerned with anaerobic lactate-utilization in human intestinal bacteria' as published in <i>Microbial Genomics. </i>
DOI: 10.6084/m9.figshare.16510344.v1
title: Distribution, organization and expression of genes concerned with anaerobic lactate-utilization in human intestinal bacteria

description: Supplementary Material for 'Distribution, organization and expression of genes concerned with anaerobic lactate-utilization in human intestinal bacteria' as published in <i>Microbial Genomics. </i>
DOI: 10.15480/336.3790
title: Wafer‐Scale Electroactive Nanoporous Silicon: Large and Fully Reversible Electrochemo‐Mechanical Actuation in Aqueous Electrolytes

description: Data for the publication "Wafer‐Scale Electroactive Nanoporous Silicon: Large and Fully Reversible Electrochemo‐Mechanical Actuation in Aqueous Electrolytes" as well as a detailed description of the datasets.
DOI: 10.6084/m9.figshare.16438062
title: Species confirmation of the entomopathogenic nematode, Steinernema siamkayai, and pilot study

description: An attempt was made to replicate prior fecundity work in the entomopathogenic nematode (insect slaying) <i>Steinernema siamkayai </i>. Species confirmation described within this file involved standard morphological and molecular techniques.
DOI: 10.6084/m9.figshare.16438062.v3
title: Species confirmation of the entomopathogenic nematode, Steinernema siamkayai, and pilot study

description: An attempt was made to replicate prior fecundity work in the entomopathogenic nematode (insect slaying) <i>Steinernema siamkayai </i>. Species confirmation described within this file involved standard morphological and molecular techniques.
DOI: 10.6084/m9.figshare.16438062.v2
title: Species confirmation of the entomopathogenic nematode, Steinernema siamkayai, and pilot study

description: An attempt was made to replicate prior fecundity work in the entomopathogenic nematode (insect slaying) <i>Steinernema siamkayai </i>. Species confirmation described within this file involved standard morphological and molecular techniques.
DOI: 10.17178/cryobsclim.clb.bso
title: Col du Lac Blanc, Hourly blowing snow occurrence

description: This dataset is part of the Cryobs-Clim-CLB (CRYosphere, an OBServatory of the CLIMate – Col du Lac Blanc) observatory
description: This dataset contains information on hourly blowing snow occurrence at the experimental site of Col du Lac Blanc. Data span the period from 1/12 to 31/3 every winter from winter 2000/2001 until winter 2015/2016. Data are available in a csv format (separator «;») and are organized in 2 columns: C1 : Date (UTC) : date (format year/month/day hour:minute) C2 : Blowing snow occurrence : Blowing snow occurrence as an integer (0: no blowing snow; 1: blowing snow with concurrent snowfall; 2: blowing snow without concurrent snowfall) The identification of blowing snow occurrence relies on an empirical method that requires the combination of several datasets (wind speed and snow depth from the Lac Blanc AWS and SAFRAN snowfall amount) and their detailed analysis by an expert. This method is extensively described in Vionnet et al (2013, Advances in Water resources) and a full description of the dataset is available in Guyomarc’h et al. (ESSD, 2018).
DOI: 10.17178/cryobsclim.clb.col
title: Col, Automatic Weather Station

description: This dataset is part of the Cryobs-Clim-CLB (CRYosphere, an OBServatory of the CLIMate – Col du Lac Blanc) observatory
description: The Col AWS provides continuous measurements of snow depth, wind direction and speed (mean value) and horizontal blowing snow fluxes (g/m²/s) at 10-minute time step. Data span the period from 1/12 to 31/3 every winter from winter 2009/2010 until winter 2015/2016. Data are available in a csv format (separator « ; ») and are organized in 10 columns: C1 : Date (UTC) : date (format day/month/year hour:minute) C2 : Wind Dir (deg) : wind direction (deg) C3 : Avg Wind Speed (m/s) : mean wind speed (m/s) C4 : Hgt anemo (m) : Height of wind speed and direction above the snow surface (m) C5 : Snow depth (m) : snow depth (m) C6 : Avg Drift Snow flux (g/m²/s) : mean horizontal snow flux measured at a given height (g/m²/s) C7 : Hgt Drift Snow flux sensor (m) : height of C6 measurement point above the snow surface (m) C8 : Fluxint1m (g/m²/s) : mean horizontal snow flux vertically integrated between 0.2 and 1.2 m above the snow surface (g/m²/s) C9 : Fluxat1m (g/m²/s) : mean horizontal snow flux estimated at 1 m above the snow surface (g/m²/s) C10 : Type : type of snow flux vertical profiles as a descriptive text ("Power_Law", "Mean", "Undetermined", "Inconsistent", "Maintenance", " No_Flux ") The estimations of mean horizontal snow flux vertically integrated between 0.2 and 1.2 m above the snow surface and at 1 m above the snow surface rely on measurements of snow fluxes at several heights above the snow surface and assumptions on the shape of the vertical profile of snow flux. A full description of the data, including more details on the integration method, is available in Guyomarc’h et al. (ESSD, 2018).
DOI: 10.17178/cryobsclim.clb.dem
title: Col du Lac Blanc, Digital Elevation Model

description: This dataset is part of the Cryobs-Clim-CLB (CRYosphere, an OBServatory of the CLIMate – Col du Lac Blanc) observatory
description: The Digital Elevation Model of the study area (1,5 km² ) is represented as a raster at 1-m resolution and is provided in RGF 93 Lambert 93 coordinates. It was acquired by SINTEGRA company through airborne lidar (Riegl LMS Q680i) with an altimetric accuracy (standard deviation) of 10 cm and a planimetric accuracy (standard deviation) of 20 cm on October, 4, 2017. At that time the ground was free of snow. The used format is GRASS ASCII Grid. It has a header section which describes the location and size of the data, followed by the data itself. The header has 6 lines: north: xxxxxx.xx south: xxxxxx.xx east: xxxxxx.xx west: xxxxxx.xx rows: r cols: c The north, south, east, and west field values entered are the coordinates of the edges of the geographic region. The rows and cols field values entered describe the dimensions of the matrix of data to follow.
DOI: 10.17178/cryobsclim.clb.dome
title: Dome, Automatic Weather Station

description: This dataset is part of the Cryobs-Clim-CLB (CRYosphere, an OBServatory of the CLIMate – Col du Lac Blanc) observatory
description: The Dome AWS provides continuous measurements of air temperature, wind direction and speed (mean, maximal and minimal value). Data span the period from 1/12 to 31/3 every winter from winter 2000/2001 until winter 2015/2016. Data are available in a csv format (separator «;») and are organized in 6 columns: C1 : Date (UTC) : date (format year/month/day hour:minute) C2 : Air Temp (K) : air temperature (K) C3 : Avg Wind Speed (m/s) : mean wind speed (m/s) C4 : Max Wind Speed (m/s) : maximal wind speed (m/s) C5 : Min Wind Speed (m/s) : minimal wind speed (m/s) C6 : Wind Dir (deg) : wind direction (deg) Wind speed and direction are measured at 8.5 m above the snow-free ground and air temperarture is measured at 7.5 m above the snow-free ground in a ventilated shelter. In wintertime, typical snow accumulation below the sensors reaches 1 to 2 m. A full description of the data is available in Guyomarc’h et al. (ESSD, 2018)
DOI: 10.17178/cryobsclim.clb.lacblanc
title: Lac Blanc, Automatic Weather Station

description: This dataset is part of the Cryobs-Clim-CLB (CRYosphere, an OBServatory of the CLIMate – Col du Lac Blanc) observatory
description: The Lac Blanc AWS provides continuous measurements of air temperature, wind direction and speed (mean, maximal and minimal value). Data span the period from 1/12 to 31/3 every winter from winter 2000/2001 until winter 2015/2016. Data are available in a csv format (separator «;») and are organized in 7 columns: C1 : Date (UTC) : date (format year/month/day hour:minute) C2 : Air Temp (K) : air temperature (K) C3 : Avg Wind Speed (m/s) : mean wind speed (m/s) C4 : Max Wind Speed (m/s) : maximal wind speed (m/s) C5 : Min Wind Speed (m/s) : minimal wind speed (m/s) C6 : Wind Dir (deg) : wind direction (deg) C7 : Snow depth (m): snow depth (m) Wind speed and direction are measured at 7.5 m above the snow-free ground and air temperarture is measured at 6 m above the snow-free ground in a ventilated shelter. A full description of the data is available in Guyomarc’h et al. (ESSD, 2018).
DOI: 10.17178/cryobsclim.clb.muzelle
title: Muzelle, Automatic Weather Station

description: This dataset is part of the Cryobs-Clim-CLB (CRYosphere, an OBServatory of the CLIMate – Col du Lac Blanc) observatory
description: The Muzelle AWS provides continuous measurements of air temperature, wind direction and speed (mean, maximal and minimal value). Data span the period from 1/12 to 31/3 every winter from winter 2000/2001 until winter 2015/2016. Data are available in a csv format (separator «;») and are organized in 7 columns: C1 : Date (UTC) : date (format year/month/day hour:minute) C2 : Air Temp (K) : air temperature (K) C3 : Avg Wind Speed (m/s) : mean wind speed (m/s) C4 : Max Wind Speed (m/s) : maximal wind speed (m/s) C5 : Min Wind Speed (m/s) : minimal wind speed (m/s) C6 : Wind Dir (deg) : wind direction (deg) C7 : Snow depth (m) : snow depth (m) Wind speed and direction are measured at 7 m above the snow-free ground and air temperarture is measured at 5.5 m above the snow-free ground in a ventilated shelter. A full description of the data is available in Guyomarc’h et al. (ESSD, 2018).
DOI: 10.17178/cryobsclim.clb.safran
title: Col du Lac Blanc, SAFRAN meteorological data

description: This dataset is part of the Cryobs-Clim-CLB (CRYosphere, an OBServatory of the CLIMate – Col du Lac Blanc) observatory
description: This data set contains continuous hourly meteorological output of the SAFRAN meteorological analysis system (Durand et al., Annals of Glaciology, 1993) at the elevation of Col du Lac Blanc in the Grandes Rousses range from August 1st 2000 to August 1st 2016. Data are available in a csv format (separator «;») and are organized in 11 columns : C1 : Date (UTC) : date (format year/month/day hour:minute) C2 : Air Temp (K) : air temperature (K) C3 : Specific Hum. (kg/kg) : specific Humidity (kg/kg) C4 : Avg Wind Speed (m/s) : mean wind speed (m/s) C5 : Wind Dir (deg) C6 : Down Longwave Rad (W/m²) : downward longwave radiation (W/m²) C7 : Down direct Shortwave Rad (W/m²) : downward direct shortwave radiation (W/m²) C8 : Down diffuse Shortwave Rad. (W/m²) : downward diffuse shortwave radiation (W/m²) C9 : Nebulosity (-) : nebulosity (-) C10 : Rainfall rate (kg/m²/s) : rainfall rate (kg/m²/s) C11 : Snowfall rate (kg/m²/s) : snowfall rate (kg/m²/s) SAFRAN data at Col du Lac Blanc are provided to get all the meteorological parameters required to run continuously a land surface model without the need to restart the system every winter. It is recommended to replace SAFRAN wind speed and direction by the observations collected at Col du Lac Blanc when running a land surface scheme at Col du Lac Blanc in wintertime as described in Vionnet et al. (Advances in Water Resources, 2013).
DOI: 10.5281/zenodo.5856310
title: GWAS on salt stress responses in root system architecture parameters of wild tomato (S. pimpinellifolium)

description: The population of +/2 200 accessions of wild tomato was screened with the protocol described here with the only exception that the plants were transferred 4 days after germination (rather than 3 - described in the protocol). The images were analyzed using the SmartRoot for days 0, 1, 2, 3, and 4 after transfer to treatment plates (0 or 100 mM NaCl, 1/4 MS, 0.5% sucrose, 0.1% MES, 1% Dashin agar). The data analysis was performed as described here, while the pareto front calculations were done according to Chandrasekhar & Julkowska paper (preprint here). The GWAS was performed using the ASReml script similar to Awlia et al. (2021).
DOI: 10.5281/zenodo.5856309
title: GWAS on salt stress responses in root system architecture parameters of wild tomato (S. pimpinellifolium)

description: The population of +/2 200 accessions of wild tomato was screened with the protocol described here with the only exception that the plants were transferred 4 days after germination (rather than 3 - described in the protocol). The images were analyzed using the SmartRoot for days 0, 1, 2, 3, and 4 after transfer to treatment plates (0 or 100 mM NaCl, 1/4 MS, 0.5% sucrose, 0.1% MES, 1% Dashin agar). The data analysis was performed as described here, while the pareto front calculations were done according to Chandrasekhar & Julkowska paper (preprint here). The GWAS was performed using the ASReml script similar to Awlia et al. (2021).
DOI: 10.5281/zenodo.5872710
title: AMS and FTIR measurements and the corresponding codes for their statistical combination

description: This dataset includes the post-processed FTIR and AMS data for the particulate phase obtained by Yazdani et al., https://doi.org/10.5194/amt-2021-186 form wood and coal burning experiments in the PSI environmental simulation chamber. It also contains the codes for the statistical combination of AMS and FTIR measurements to estimate the high-time-resolution functional group composition of organic aerosols.
DOI: 10.5281/zenodo.5872709
title: AMS and FTIR measurements and the corresponding codes for their statistical combination

description: This dataset includes the post-processed FTIR and AMS data for the particulate phase obtained by Yazdani et al., https://doi.org/10.5194/amt-2021-186 form wood and coal burning experiments in the PSI environmental simulation chamber. It also contains the codes for the statistical combination of AMS and FTIR measurements to estimate the high-time-resolution functional group composition of organic aerosols.
DOI: 10.5281/zenodo.5873436
title: FIB cleaned and reshaped Electrostatic electron vortex beam generators - dataset2

description: Here is a second set of SEM images of Electrostatic electron vortex beam generators fabricated at the CNR-IMM in Bologna and FIB cleaned and reshaped at the CNR-NANO in Modena. The difference between this batch of devices and the first one is in the thickness of the electrode (the z-dimension), this batch has a electrode thickness of 30um, while the first batch is 10um thick.
DOI: 10.5281/zenodo.5873435
title: FIB cleaned and reshaped Electrostatic electron vortex beam generators - dataset2

description: Here is a second set of SEM images of Electrostatic electron vortex beam generators fabricated at the CNR-IMM in Bologna and FIB cleaned and reshaped at the CNR-NANO in Modena. The difference between this batch of devices and the first one is in the thickness of the electrode (the z-dimension), this batch has a electrode thickness of 30um, while the first batch is 10um thick.
DOI: 10.25345/c5j86h
title: MassIVE MSV000088695 - GNPS - Self-Resistance Mechanism mediated by N-acetyltransferase PamZ
title: Self-resistance mechanism mediated by N-acetyltransferase PamZ by deactivation of own antibacterial agent paenilamicin in Paenibacillus larvae, the causative agent of the honey bee disease American Foulbrood.
DOI: 10.25500/edata.bham.00000750
title: Research data supporting the thesis "Can transposon directed insertion-site sequencing be used to predict possible outcomes of evolution?"
DOI: 10.5281/zenodo.5873445
title: Nicotiana benthamiana and virus genomic references

description: Nicotiana benthamiana curated and modified genomic references. TSWV viral references.
DOI: 10.5281/zenodo.5862989
title: Nicotiana benthamiana and virus genomic references

description: Nicotiana benthamiana curated and modified genomic references. TSWV viral references.
DOI: 10.6084/m9.figshare.18620330.v1
title: ARRIVE Guidelines checklist

description: Study of the effect of asparaginases and L-carnitine on Westrn- diet-induced hepatosteatosis in mice
DOI: 10.5287/bodleian:gjzz9kde0
title: Books, Minds, and Bodies dataset
DOI: 10.6084/m9.figshare.11969064.v1
title: Phenotype of Innate Immune Cells in Uveitis Associated with Axial Spondyloarthritis- and Juvenile Idiopathic Arthritis-associated Uveitis

description: <b>Purpose</b>: To analyze circulating immune cells in patients with anterior uveitis (AU) associated to axial spondyloarthritis (SpA), or juvenile idiopathic arthritis (JIA). <b>Methods</b>: Venous blood samples were collected from healthy controls (n = 16), and either SpA (n = 19) or JIA (n = 23) patients with associated anterior uveitis (AU) during active flare, or after ≥3 months of inactivity. Frequencies of CD56<sup>+</sup>, MHC-I<sup>+</sup>, and S100A9<sup>+</sup> monocytes, CCR7<sup>+</sup> dendritic cells, CD56<sup>+dim</sup> natural killer (NK) cells and CD3<sup>+</sup>CD56<sup>bright</sup> T-cells were analyzed via flow cytometry. Serum S100A8/A9 levels were determined via ELISA. <b>Results</b>: SpA patients showed a reduced frequency of CD56<sup>+dim</sup> NK cells during uveitis activity, a constitutively activated monocyte phenotype, and elevated S100A8/A9 serum levels. In contrast, JIAU patients showed elevated frequencies of CD56<sup>+</sup> monocytes and CCR7<sup>+</sup> DC. <b>Conclusion</b>: Phenotype of peripheral immune cells differ between patients, probably contributing to different courses of acute onset AU in SpA and insidious onset AU in JIAU patients. <b>Abbreviations</b>: AU: anterior uveitis, AR: arthritis, JIA: juvenile idiopathic arthritis, SpA: axial spondyloarthritis
DOI: 10.6084/m9.figshare.12123903
title: An Algorithm for the Diagnosis of Behçet Disease Uveitis in Adults

description: <b>Purpose</b>: To develop an algorithm for the diagnosis of Behçet’s disease (BD) uveitis based on ocular findings. <b>Methods</b>: Following an initial survey among uveitis experts, we collected multi-center retrospective data on 211 patients with BD uveitis and 207 patients with other uveitides, and identified ocular findings with a high diagnostic odds ratio (DOR). Subsequently, we collected multi-center prospective data on 127 patients with BD uveitis and 322 controls and developed a diagnostic algorithm using Classification and Regression Tree (CART) analysis and expert opinion. <b>Results</b>: We identified 10 items with DOR &gt;5. The items that provided the highest accuracy in CART analysis included superficial retinal infiltrate, signs of occlusive retinal vasculitis, and diffuse retinal capillary leakage as well as the absence of granulomatous anterior uveitis or choroiditis in patients with vitritis. <b>Conclusion</b>: This study provides a diagnostic tree for BD uveitis that needs to be validated in future studies.
DOI: 10.6084/m9.figshare.11969064
title: Phenotype of Innate Immune Cells in Uveitis Associated with Axial Spondyloarthritis- and Juvenile Idiopathic Arthritis-associated Uveitis

description: <b>Purpose</b>: To analyze circulating immune cells in patients with anterior uveitis (AU) associated to axial spondyloarthritis (SpA), or juvenile idiopathic arthritis (JIA). <b>Methods</b>: Venous blood samples were collected from healthy controls (n = 16), and either SpA (n = 19) or JIA (n = 23) patients with associated anterior uveitis (AU) during active flare, or after ≥3 months of inactivity. Frequencies of CD56<sup>+</sup>, MHC-I<sup>+</sup>, and S100A9<sup>+</sup> monocytes, CCR7<sup>+</sup> dendritic cells, CD56<sup>+dim</sup> natural killer (NK) cells and CD3<sup>+</sup>CD56<sup>bright</sup> T-cells were analyzed via flow cytometry. Serum S100A8/A9 levels were determined via ELISA. <b>Results</b>: SpA patients showed a reduced frequency of CD56<sup>+dim</sup> NK cells during uveitis activity, a constitutively activated monocyte phenotype, and elevated S100A8/A9 serum levels. In contrast, JIAU patients showed elevated frequencies of CD56<sup>+</sup> monocytes and CCR7<sup>+</sup> DC. <b>Conclusion</b>: Phenotype of peripheral immune cells differ between patients, probably contributing to different courses of acute onset AU in SpA and insidious onset AU in JIAU patients. <b>Abbreviations</b>: AU: anterior uveitis, AR: arthritis, JIA: juvenile idiopathic arthritis, SpA: axial spondyloarthritis
DOI: 10.6084/m9.figshare.12123903.v2
title: An Algorithm for the Diagnosis of Behçet Disease Uveitis in Adults

description: <b>Purpose</b>: To develop an algorithm for the diagnosis of Behçet’s disease (BD) uveitis based on ocular findings. <b>Methods</b>: Following an initial survey among uveitis experts, we collected multi-center retrospective data on 211 patients with BD uveitis and 207 patients with other uveitides, and identified ocular findings with a high diagnostic odds ratio (DOR). Subsequently, we collected multi-center prospective data on 127 patients with BD uveitis and 322 controls and developed a diagnostic algorithm using Classification and Regression Tree (CART) analysis and expert opinion. <b>Results</b>: We identified 10 items with DOR &gt;5. The items that provided the highest accuracy in CART analysis included superficial retinal infiltrate, signs of occlusive retinal vasculitis, and diffuse retinal capillary leakage as well as the absence of granulomatous anterior uveitis or choroiditis in patients with vitritis. <b>Conclusion</b>: This study provides a diagnostic tree for BD uveitis that needs to be validated in future studies.
DOI: 10.6084/m9.figshare.12123903.v1
title: An Algorithm for the Diagnosis of Behçet Disease Uveitis in Adults

description: <b>Purpose</b>: To develop an algorithm for the diagnosis of Behçet’s disease (BD) uveitis based on ocular findings. <b>Methods</b>: Following an initial survey among uveitis experts, we collected multi-center retrospective data on 211 patients with BD uveitis and 207 patients with other uveitides, and identified ocular findings with a high diagnostic odds ratio (DOR). Subsequently, we collected multi-center prospective data on 127 patients with BD uveitis and 322 controls and developed a diagnostic algorithm using Classification and Regression Tree (CART) analysis and expert opinion. <b>Results</b>: We identified 10 items with DOR &gt;5. The items that provided the highest accuracy in CART analysis included superficial retinal infiltrate, signs of occlusive retinal vasculitis, and diffuse retinal capillary leakage as well as the absence of granulomatous anterior uveitis or choroiditis in patients with vitritis. <b>Conclusion</b>: This study provides a diagnostic tree for BD uveitis that needs to be validated in future studies.