cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14954772
title: Supplementary material for "Attitudes of LLM Use in Software Engineering Research: Results From A Two-Phase Survey Study"

description: Detailed description of the two survey batteries described in the paper.
DOI: 10.5281/zenodo.15277628
title: Supplementary material for "Attitudes of LLM Use in Software Engineering Research: Results From A Two-Phase Survey Study"

description: Detailed description of the two survey batteries described in the paper.
DOI: 10.14288/1.0377566
title: KielstraArnottGunn_EcolApp

description: &lt;p&gt;Data for:&lt;/p&gt; &lt;p&gt;Kielstra, B. W., Arnott, S. E. and Gunn, J. M. (2017), Subcatchment deltas and upland features influence multiscale aquatic ecosystem recovery in damaged landscapes. Ecol Appl, 27: 2249–2261. doi:10.1002/eap.1609&lt;/p&gt; &lt;p&gt;Data are separated by major components of the paper: 1) 'Regional Scale, 40-lake synoptic survey', 2) 'Subcatchment scale, six-lake abundance survey', 3) 'Subcatchment scale, single-lake abundance survey'.&lt;/p&gt;
DOI: 10.14288/1.0354319
title: Multivariate maps of forest attributes for management units in Canada's boreal forest

description: A spatially explicit “wall to wall” forest inventory of percent crown closure (CC), average height (Ht), average age (Age), and commercial species percentages derived using a multi-source inventory approach from Lochhead et al. (2017). This process involved compiling a suite of spatial layers including Landsat TM/ETM+ imagery, interpolated climate variables, topographic variables and other remote sensing products to be used as predictors and Canada’s National Forest Inventory photo plot information (1986-2010) as the source of dependant variables.Following Lochhead et al.(2017) the application used a method called kriging with external drift which relies on a system of non-linear models with spatially varying parameters to produce multivariate maps for the year 2010 at a 90m x 90m pixel resolution. The resulting maps are clipped to each forest management area (FMA) boundary which was sourced online (www.databasin.org). For cases, where a 90 m x 90 m pixel window overlapped non-vegetated area (e.g., waterbodies) the forest attribute information was averaging using only the vegetated pixels (i.e., prorating). For more information on methods refer to the publication.
DOI: 10.14288/1.0360719
title: Modeling sources of inter-laboratory variability in electrophysiological properties of mammalian neurons

description: Patch-clamp electrophysiology is widely used to characterize neuronal electrical phenotypes. However, there are no standard experimental conditions for in vitro whole-cell patch-clamp electrophysiology, complicating direct comparisons between datasets. Here, we sought to understand how basic experimental conditions differ among labs and how these differences might impact measurements of electrophysiological parameters. We curated the compositions of external bath solutions (ACSF), internal pipette solutions, and other methodological details such as animal strain and age from 509 published neurophysiology articles studying rodent neurons. We found that very few articles used the exact same experimental solutions as any other and some solution differences stem from recipe inheritance from adviser to advisee as well as changing trends over the years. Next, we used statistical models to understand how the use of different experimental conditions impacts downstream electrophysiological measurements such as resting potential and action potential width. While these experimental condition features could explain up to 43% of the study-to-study variance in electrophysiological parameters, the majority of the variability was left unexplained. Our results suggest that there are likely additional experimental factors that contribute to cross-laboratory electrophysiological variability, and identifying and addressing these will be important to future efforts to assemble consensus descriptions of neurophysiological phenotypes for mammalian cell types.
DOI: 10.14288/1.0360722
title: To Estimate and Optimize the Source of Drinking Water for Metro Vancouver until 2040

description: The population of Metro Vancouver (20110729Regional Growth Strategy Projections Population, Housing and Employment 2006 – 2041 File) will have increased greatly by 2040, and finding a new source of reservoirs for drinking water (2015_ Water Consumption_ Statistics File) will be essential. This issue of drinking water needs to be optimized and estimated (Data Mining file) with the aim of developing the region. Three current sources of water reservoirs for Metro Vancouver are Capilano, Seymour, and Coquitlam, in which the treated water is being supplied to the customer. The linear optimization (LP) model (Optimization, Sensitivity Report File) illustrates the amount of drinking water for each reservoir and region. In fact, the B.C. government has a specific strategy for the growing population till 2040, which leads them toward their goal. In addition, another factor is the new water source for drinking water that needs to be estimated and monitored to anticipate the feasible water source (wells) until 2040. As such, the government will have to make a decision on how much groundwater is used. The goal of the project is two steps: (1) an optimization model for three water reservoirs, and (2) estimating the new source of water to 2040. &lt;p&gt;The process of data analysis for the project includes: the data is analyzed with six software—Trifacta Wrangler, AMPL, Excel Solver, Arc GIS, and SQL—and is visualized in Tableau. 1. Trifacta Wrangler Software clean data (Data Mining file). 2. AMPL and Solver Excel Software optimize drinking water consumption for Metro Vancouver (data in the Optimization and Sensitivity Report file). 3. ArcMap collaborates the raw data and result of the optimization water reservoir and estimating population till 2040 with the ArcGIS software (GIS Map for Tableau file). 4. Visualizing, estimating, and optimizing the source of drinking water for Metro Vancouver until 2040 with SQL software in Tableau (export tableau data file).
DOI: 10.14288/1.0343444
title: Protease-inhibitor interaction predictions: Lessons on the complexity of protein-protein interactions

description: Protein interactions shape proteome function and thus biology. Identification of protein interactions is a major goal in molecular biology, but biochemical methods, although improving, remain limited in coverage and accuracy. Whereas computational predictions can guide biochemical experiments, low validation rates of predictions remain a major limitation. Here, we investigated computational methods in the prediction of a specific type of interaction, the inhibitory interactions between proteases and their inhibitors. Proteases generate thousands of proteoforms that dynamically shape the functional state of proteomes. Despite the important regulatory role of proteases, knowledge of their inhibitors remains largely incomplete with the vast majority of proteases lacking an annotated inhibitor. To link inhibitors to their target proteases on a large scale, we applied computational methods to predict inhibitory interactions between proteases and their inhibitors based on complementary data including coexpression, phylogenetic similarity, structural information, co-annotation, and colocalization, and also surveyed general protein interaction networks for potential inhibitory interactions. In testing nine predicted interactions biochemically, we validated the inhibition of kallikrein 5 by serpin B12. Despite the use of a wide array of complementary data, we found a high false positive rate of computational predictions in biochemical follow-up. Based on a protease-specific definition of true negatives derived from the biochemical classification of proteases and inhibitors, we analyzed prediction accuracy of individual features. Thereby we identified feature-specific limitations, which also affected general protein interaction prediction methods. Interestingly, proteases were often not coexpressed with most of their functional inhibitors, contrary to what is commonly assumed and extrapolated predominantly from cell culture experiments. Predictions of inhibitory interactions were indeed more challenging than predictions of non-proteolytic and non-inhibitory interactions. In summary, we describe a novel and well-defined but difficult protein interaction prediction task, and thereby highlight limitations of computational interaction prediction methods.
DOI: 10.14288/1.0347326
title: Transcriptomic correlates of neuron electrophysiological diversity

description: How neuronal diversity emerges from complex patterns of gene expression remains poorly understood. Here we present an approach to understand electrophysiological diversity through gene expression by integrating pooled- and single-cell transcriptomics with intracellular electrophysiology. Using neuroinformatics methods, we compiled a brain-wide dataset of 34 neuron types with paired gene expression and intrinsic electrophysiological features from publically accessible sources, the largest such collection to date. We identified 420 genes whose expression levels significantly correlated with variability in one or more of 11 physiological parameters. We next trained statistical models to infer cellular features from multivariate gene expression. Such models were predictive of gene-electrophysiological relationships in an independent collection of 12 visual cortex cell types from the Allen Institute, suggesting that these correlations might reflect general principles relating expression patterns to phenotypic diversity across very different cell types. Many associations reported here have the potential to provide new insights into how neurons generate functional diversity, and correlations of ion channel genes like Gabrd and Scn1a (Nav1.1) with resting potential and spiking frequency are consistent with known causal mechanisms. Our work highlights the promise and inherent challenges in using cell type-specific transcriptomics to understand the mechanistic origins of neuronal diversity.
DOI: 10.5281/zenodo.15274198
title: Dataset: Evidence for Phenylium Reactivity under Interstellar Relevant Conditions

description: Raw measurement data and processing scripts used to support the findings in the paper: Evidence for Phenylium Reactivity under Interstellar Conditions, by Jean-Christophe Loison, Corentin Rossi, Nicolas Solem, Roland Thissen,Claire Romanzin, Christian Alcaraz and Ugo Jacovella.
DOI: 10.5281/zenodo.15274199
title: Dataset: Evidence for Phenylium Reactivity under Interstellar Relevant Conditions

description: Raw measurement data and processing scripts used to support the findings in the paper: Evidence for Phenylium Reactivity under Interstellar Conditions, by Jean-Christophe Loison, Corentin Rossi, Nicolas Solem, Roland Thissen,Claire Romanzin, Christian Alcaraz and Ugo Jacovella.
DOI: 10.14288/1.0347528
title: UBC Research Data Management Survey: Health Sciences

description: In 2016, the Canadian federal funding agencies introduced the Tri-Agency Statement of Principles on Digital Data Management, which advocates for developing data management plans (DMPs) and making data available for future research. A data management plan addresses questions about: research data types and formats, metadata standards, ethics and legal compliance, data storage and reuse, assignment of data management responsibilities, and resource requirements. With anticipation that DMPs will be increasingly required in grants applications, librarians at University of British Columbia surveyed researchers about their RDM practices and needs in three phases, each of which targets different disciplines: 1) the Sciences and Engineering (fall 2015), 2) the Social Sciences and Humanities (fall 2016), and 3) the Health Sciences (spring 2017). The surveys illuminate disciplinary differences in RDM, and will inform the University in developing infrastructure and services to support researchers in RDM. This report describes findings from the third survey at UBC targeting researchers in the Health Sciences.
DOI: 10.15468/dl.6cz4ff
title: Occurrence Download

description: A dataset containing 211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Conotelus obscurus"
 ]
}

 The dataset includes 211 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037945-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtaaj5
title: Occurrence Download

description: A dataset containing 2270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.11576 42.32661,-71.11227 42.32661,-71.11227 42.33088,-71.11576 42.33088,-71.11576 42.32661))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Branta canadensis, Anas platyrhynchos, Sciurus carolinensis)",
 "Year 2020-2025"
 ]
}

 The dataset includes 2270 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037946-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5378yn
title: Occurrence Download

description: A dataset containing 119312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Adelidae",
 "HasCoordinate is true",
 "Continent is Europe",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "Year is one of (1950, 1951, 1952, 1953, 1954, 1955, 1956, 1957, 1958, 1959, 1960, 1961, 1962, 1963, 1964, 1965, 1966, 1967, 1968, 1969, 1970, 1971, 1972, 1973, 1974, 1975, 1976, 1977, 1978, 1979, 1980, 1981, 1982, 1983, 1984, 1985, 1986, 1987, 1988, 1989, 1990, 1991, 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024, 2025)"
 ]
}

 The dataset includes 119312 records from 614 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037939-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epyfc7
title: Occurrence Download

description: A dataset containing 43378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, China, Canada, Brazil)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum carolinense",
 "Year 1970-2025"
 ]
}

 The dataset includes 43378 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037952-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kb22r
title: Occurrence Download

description: A dataset containing 174030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations)",
 "Geometry POLYGON((-124.05237 39.1488,-122.14036 39.1488,-122.14036 41.00668,-124.05237 41.00668,-124.05237 39.1488))",
 "Year is greater than or equal to 2014"
 ]
}

 The dataset includes 174030 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037949-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.we447s
title: Occurrence Download

description: A dataset containing 484696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.24_2",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EN, LC, VU, DD, NT, NE, CR, EW)",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 484696 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037943-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tts3hz
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ecuador, Peru)",
 "TaxonKey is Nissolia latisiliqua"
 ]
}

 The dataset includes 84 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037953-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30631352
title: Raw ARPES data to the paper on spin-orbit interaction proximity effect in MoSe<sub>2</sub> by F. Alarab et al (Nature Communications, 2026).

description: Raw ARPES data to the paper "<b>k</b>-dependent modulation of intrinsic spin-orbit interaction in MoSe<sub>2</sub> induced by proximity to amorphous Pb" by F. Alarab, J. Minár, P. Constantinou, D. Nafday, A. Pulkkinen, T. Schmitt, X. Wang & V. N. Strocov published in Nature Communications (2026). The data is sorted in relation to the figures included in the paper and Supporting Information.
DOI: 10.6084/m9.figshare.30631352.v1
title: Raw ARPES data to the paper on spin-orbit interaction proximity effect in MoSe<sub>2</sub> by F. Alarab et al (Nature Communications, 2026).

description: Raw ARPES data to the paper "<b>k</b>-dependent modulation of intrinsic spin-orbit interaction in MoSe<sub>2</sub> induced by proximity to amorphous Pb" by F. Alarab, J. Minár, P. Constantinou, D. Nafday, A. Pulkkinen, T. Schmitt, X. Wang & V. N. Strocov published in Nature Communications (2026). The data is sorted in relation to the figures included in the paper and Supporting Information.
DOI: 10.15468/dl.ue3hr6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hordeum murinum",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035081-250811113504898/datasets/export for details.
DOI: 10.15468/dl.7tb35w
title: Occurrence Download

description: A dataset containing 294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Chinese Taipei, China)",
 "OccurrenceStatus is Present",
 "TaxonKey is Fagus hayatae",
 "Year 1961-2025"
 ]
}

 The dataset includes 294 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035082-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9cwttn
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hordeum murinum",
 "Country is Belarus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035080-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vs7bnh
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salmo trutta",
 "Country is Cyprus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035086-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rd92m
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salmo trutta",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035085-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bs7a7x
title: Occurrence Download

description: A dataset containing 424699 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ARE.1_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2020-2025"
 ]
}

 The dataset includes 424699 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035050-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12845315
title: Small-Derma-VQA
DOI: 10.15468/dl.agweu3
title: Occurrence Download

description: A dataset containing 24769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is GRC.3.1.12_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2020-2025"
 ]
}

 The dataset includes 24769 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035083-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jrsd6b
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hordeum murinum",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 38 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035087-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6ds46
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Oocatochus rufodorsatus"
 ]
}

 The dataset includes 191 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035088-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55863q
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salmo trutta",
 "Country is Ecuador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035089-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjnum9
title: Occurrence Download

description: A dataset containing 291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hordeum murinum",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 291 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035090-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.