cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2530159
title: Single-molecule source data files

description: This data archive contains single-molecule source data for "Delayed inhibition mechanism for secondary channel factor regulation of ribosomal RNA transcription" by Sarah K. Stumper, Harini Ravi, Larry J. Friedman, Rachel Anne Mooney, Ivan R. Corrêa, Jr., Anne Gershenson, Robert Landick, and Jeff Gelles. The data archive (doi: 10.5281/zenodo.2530159) provides files for each figure and figure supplement. The files are ‘intervals’ files readable by the imscroll program (https://github.com/gelles-brandeis/CoSMoS_Analysis).
DOI: 10.5281/zenodo.6658779
title: Absolute sea level changes along the coast of China from tide gauges, GNSS and satellite altimetry

description: The datasets are used for the study of absolute sea level changes along the coast of China from tide gauges, GNSS and satellite altimetry. There are five folders containing the data of GNSS, tide gauge, land freshwater runoff and the results extraction from AVISO grid products. A data description is included in the datasets.
DOI: 10.5281/zenodo.836352
title: Dataset And Source Code For Icsme2017 Paper "Supervised Vs Unsupervised Models: A Holistic Look At Effort-Aware Just-In-Time Defect Prediction"

description: Dataset and source code for ICSME2017 paper “Supervised vs Unsupervised Models: A Holistic Look at Effort-Aware Just-in-Time Defect Prediction”

There are four different models in the paper (i.e., EALR, LT, CBS and OneWay). Each model was implemented in a single Java file in the model package. To reproduce the experiment results of each model in the paper, just run the main method in the corresponding Java file.
DOI: 10.6084/m9.figshare.1471768
title: Scale-dependent thermal tolerance variation in Australian mountain grasshoppers

description: Critical thermal minimum (CTmin), supercooling point (SCP), critical thermal maximum (CTmax), and heat tolerance data for three species of <em>Kosciuscola</em> grasshoppers from the Australian alpine region. Published in Ecography, 2015. *Leg length is in mm *HMT_time (Heat tolerance(2) worksheet) is the time to reach heat movement threshold and is in seconds.
DOI: 10.6084/m9.figshare.16669324
title: Data for "Hysteresis of the Intertropical Convergence Zone to CO2 Forcing"

description: Data for "Hysteresis of the Intertropical Convergence Zone to CO2 Forcing"<br><br><br>
DOI: 10.6084/m9.figshare.21061822
title: Supplementary Material for: Imagery Rescripting in der Behandlung der Posttraumatischen Belastungsstörung

description: Imagery Rescripting ist eine in vielen psychotherapeutischen Richtungen und störungsspezifischen Behandlungsansätzen eingesetzte Technik, die auch im Rahmen der Therapie der Posttraumatischen Belastungsstörung (PTBS) Anwendung findet. Das Grundprinzip besteht in der imaginativen Aktivierung einer traumatischen Erinnerung, die in eine gezielte Veränderung des Geschehens in der Vorstellung mündet. Dieses Grundprinzip wird in verschiedenen Varianten und mit unterschiedlichen Zielen in der Behandlung der PTBS eingesetzt, unter anderem als Stand-Alone-Behandlung im Rahmen der <i>Imagery Rescripting and Reprocessing Therapy (IRRT)</i> sowie dem <i>Imagery Rescripting für PTBS</i>. In der Kognitiven Therapie der PTBS wird es darüber hinaus als spezifischer Baustein zur Aktualisierung der Traumaerinnerung verwendet. Andere Varianten wurden zur Behandlung von Albträumen oder zur Reduktion eines Gefühls des Beschmutzt-Seins nach sexueller Traumatisierung entwickelt. Nach einem vergleichenden Überblick über die unterschiedlichen Einsatzmöglichkeiten werden zusammenfassend Ergebnisse der Wirksamkeitsforschung dargestellt. Der Artikel schließt mit einem Ausblick auf aktuelle Entwicklungen und zukünftige Perspektiven in Bezug auf Indikation, differenzielle Wirksamkeit und Wirkmechanismen von Imagery Rescripting zur Behandlung der PTBS. Zur Illustration der dargestellten Interventionen werden in einem Online-Supplement zwei Fallbeispiele beschrieben.
DOI: 10.6084/m9.figshare.21069046
title: Supplementary Material for: Capsular Warning Syndrome: Features, Risk Profile, and Prognosis in a Large Prospective TIA Cohort

description: <b><i>Introduction:</i></b> Features and prognosis of capsular warning syndrome (CWS) have been poorly investigated prospectively. <b><i>Aims:</i></b> The study aimed to characterize CWS clinical features, risk profile, short- and long-term prognosis, among a large TIA cohort. <b><i>Methods:</i></b> Prospective cohort study of consecutive TIAs was conducted from August 1, 2010, to December 31, 2017. Demographic and clinical characteristics, risk profile, primary (stroke and composite outcome) and secondary (TIA recurrence, cerebral hemorrhage, new onset atrial fibrillation) outcomes were compared between CWS, lacunar (L), and nonlacunar (NL) TIAs. <b><i>Results:</i></b> 1,035 patients (33 CWS, 189 L-TIAs, 813 NL-TIAs) were enrolled. Newly diagnosed (ND) hypertension, hypercholesterolemia, cigarette smoking, and leukoaraiosis were independent risk factors of CWS (<i>p</i> &lt; 0.05). CWS showed the highest stroke (30.3% vs. 0.5% and 1.5% for L-TIAs and NL-TIAs, respectively) and composite outcome risk at follow-up (<i>p</i> &lt; 0.001), but better 3-month post-stroke prognosis (mRS 0–2 90.0% vs. 36.8%; <i>p</i> = 0.002). CWS-related stroke mostly occurred &lt;48 h (80.0%) and had a small vessel occlusion etiology (100%), affecting more often the internal capsule (60.0%). Dual antiplatelet therapy (DAPT) versus single antiplatelet therapy was associated with lower 3-month cumulative stroke incidence (12.5% vs. 57.1%; <i>p</i> = 0.010). Intravenous thrombolysis (IVT) showed similar 3-month efficacy and safety in strokes after TIAs groups (median mRS 0, IQR 0–1; <i>p</i> = 0.323). <b><i>Conclusions:</i></b> CWS is associated with higher stroke risk and better functional prognosis than L- and NL-TIAs. CWS risk profile is consistent with severe small vessel disease, and ND hypertension could represent a major risk factor. DAPT and IVT seem effective and safe in preventing and treating stroke following CWS.
DOI: 10.5281/zenodo.1254000
title: A Bibliography Of The Medicinal Uses Of Oxalis Corniculata

description: OxalisCorniculataSources.bib is a BibTeX format bibliography of papers on the medicinal uses of <em>Oxalis corniculata</em>. 

OxalisRefsHarvard.pdf is a human readable version of the same bibliography.

OxalisCorniculataUses.csv is a file containing the bibliography and the medicinal uses that are mentioned in the text. In this table the uses are grouped by categories of diseases, there are IDs of related entries in the disease ontology (http://disease-ontology.org/) and there is geographic information of where the plant is used medicinally.
DOI: 10.5281/zenodo.1332025
title: Earliest records of Oxalis corniculata by country

description: <em>Oxalis corniculata</em> L. is a weed with a global distribution. Here I have gathered first observations of this species in as many countries as possible. These data come from human observations, historic literature, herbarium specimens and paleobotanical studies. Many of these records come from the Global Biodiversity Information Facility at the references below, but also the monograph of Lourteig (1979). Custom data export (3rd Sept 2015). https://doi.org/10.15468/dl.nuaaek Available from https://www.gbif.org/occurrence/download/0001780-150831095807960 [4th August 2018] Custom data export (1st March 2016). https://doi.org/10.15468/dl.bdlcpo Available from https://www.gbif.org/occurrence/download/0003355-180730143533302 [4th August 2018] Lourteig, A. (1979). Oxalidaceae extra-austroamericanae: 2. Oxalis L. Sectio Corniculatae DC. <em>Phytologia</em>, 42, 57−198. https://www.biodiversitylibrary.org/part/38832
DOI: 10.5281/zenodo.2222410
title: Dataset (encounter histories of female bats) used in the analysis for the paper Culina et al.: Live fast, don't die young: survival reproduction trade-offs in long-lived income breeders

description: Two data files (Md_capture_H, Mn_capture_H) represent the capture histories of females of two species (Myotis daubentonii = Md, and M. nattereri=Mn). These capture histories were used to run multi-event-capture-mark-recapture model, as described in the paper, and in the readme document in this data package.<br>
DOI: 10.6084/m9.figshare.20449140
title: Value representations in the rodent orbitofrontal cortex drive learning, not choice

description: Value Representation in the Rodent Orbitofrontal Cortex Drive Learning, not Choice <br> Kevin J. Miller, Matthew M. Botvinick, and Carlos D. Brody <br> Datasets and figure panels associated with the paper
DOI: 10.6084/m9.figshare.7264673
title: Plasmid Sequences - Immediate visualization of recombination events and chromosome segregation defects in fission yeast meiosis

description: Plasmid sequences associated with "Immediate visualization of recombination events and chromosome segregation defects in fission yeast meiosis"<br><b></b>
DOI: 10.25740/va90-ct15
title: Model output from N isotope global inverse model

description: Global inverse nitrogen isotope model in MATLAB. Nitrogen cycle tracers include PON, DON, NO3, and NO2 for 14N and 15N. Model output optimized to three different combinations of isotope effects for nitrate reduction (eNAR), nitrite oxidation (eNXR), and nitrite reduction (eNIR) is also available.
DOI: 10.5281/zenodo.1469120
title: W_b_arrays

description: W and b arrays of the proposed ANN - eqs. (30)-(33)

 

 

<strong>Check reference below</strong> (to be added when the paper is published)

https://www.researchgate.net/publication/328870831_12_Neural_Networks_-_Structural_Damage_-_Localization
DOI: 10.5281/zenodo.6147689
title: Dataset of steady magnetospheric convection events in Earth's magnetosphere from 1997 to 2013

description: This dataset is a list of steady magnetospheric convection (SMC) events occurring in Earth's magnetosphere between 1997 and 2013. The criteria and method of SMC selection are documented in the following two papers: Kissinger et al. (2011), "Steady magnetospheric convection and stream interfaces: Relationship over a solar cycle", JGR, doi:10.1029/2010JA015763.<br> <br> Kissinger et al. (2012), "Diversion of plasma due to high pressure in the inner magnetosphere during steady magnetospheric convection", JGR, doi:10.1029/2012JA017579. The filename "smc_list_1997_2013.csv" is a list of every SMC selected during this time period. This is a comma-separated file with two columns: the first column is the timestamp indicating the start of the SMC event, and the second column is the timestamp indicating the end of the SMC event. The filename "smc_list_1997_2013_longerthan5hrs.csv" is a subset of the first list, filtered to only SMCs with a duration longer than 5 hours. The schema of this file matches the first one, with an additional third column showing the duration of the SMC in hours.
DOI: 10.5281/zenodo.6212232
title: FSD-scatter

description: Model output from experiments described in Cooper et al 2022. Includes WW3 output of ice concentration and significant wave height (hourly) for 2018-01-01 through 2018-12-31. Includes WW3 1-D wave spectra (hourly) for 2018-07. Includes CICE output of representative radius (daily) for 2018-01-01 through 2018-12-31. Note: uncompressed file size is 2x the tar.gz file size.
DOI: 10.5281/zenodo.6213441
title: ic4m1

description: Model output from experiments described in Cooper et al 2022. Includes WW3 output of ice concentration and significant wave height (hourly) for 2018-01-01 through 2018-12-31. Includes WW3 1-D wave energy spectra (hourly) for 2018-07. Includes CICE output of representative radius (daily) for 2018-01-01 through 2018-12-31. Note: uncompressed file size is 2x the tar.gz file size.
DOI: 10.5281/zenodo.6213793
title: ic4m2

description: Model output from experiments described in Cooper et al 2022. Includes WW3 output of ice concentration and significant wave height (hourly) for 2018-01-01 through 2018-12-31. Includes WW3 1-D wave spectra (hourly) for 2018-07. Includes CICE output of representative radius (daily) for 2018-01-01 through 2018-12-31. Note: uncompressed file size is 2x the tar.gz file size.
DOI: 10.5281/zenodo.6214364
title: ic4m3rad1

description: Model output from experiments described in Cooper et al 2022. Includes WW3 output of ice concentration and significant wave height (hourly) for 2018-01-01 through 2018-12-31. Includes WW3 1-D wave spectra (hourly) for 2018-07. Includes CICE output of representative radius (daily) for 2018-01-01 through 2018-12-31. Note: uncompressed file size is 2x the tar.gz file size.
DOI: 10.5281/zenodo.7052849
title: Segmentations of the core of the acoustic radiation in HCP data

description: <strong>Description of the repository</strong>: The goal of our paper (https://doi.org/10.3389/fneur.2022.934650) was to segment the acoustic radiation (AR), one of the most important white matter fiber bundles of the hearing system. This repository contains the segmentations masks of the AR we created from 105 subjects of the Human Connectome Project (HCP) young adult dataset (https://www.humanconnectome.org/study/hcp-young-adult). These subjects are exactly the same used by Wasserthal et al. (2018) https://doi.org/10.1016/j.neuroimage.2018.07.070. In the file "data_training.tar.gz", one directory was created per HCP subject. Every directory contains the file "bundle_masks_AR.nii.gz" that contains the binary masks for the left and right AR. In our paper, we used these masks to train TractSeg. The file best_weights_ep110.npz contains the weights after training TractSeg that can be used in inference for targeting the AR. For using these weights on new data, one can use TractSeg with the option "--exp_name best_weights_ep110.npz". Please read the documentation of TractSeg and our paper for more information. If you use the training data or the pre-trained network, please cite our publication: Malin Siegbahn, Cecilia Engmér Berglin, Rodrigo Moreno. Automatic segmentation of the core of the acoustic radiation in humans. Frontiers in Neurology (2022) 13:934650. doi: 10.3389/fneur.2022.934650
DOI: 10.5281/zenodo.7052848
title: Segmentations of the core of the acoustic radiation in HCP data

description: <strong>Description of the repository</strong>: The goal of our paper (https://doi.org/10.3389/fneur.2022.934650) was to segment the acoustic radiation (AR), one of the most important white matter fiber bundles of the hearing system. This repository contains the segmentations masks of the AR we created from 105 subjects of the Human Connectome Project (HCP) young adult dataset (https://www.humanconnectome.org/study/hcp-young-adult). These subjects are exactly the same used by Wasserthal et al. (2018) https://doi.org/10.1016/j.neuroimage.2018.07.070. In the file "data_training.tar.gz", one directory was created per HCP subject. Every directory contains the file "bundle_masks_AR.nii.gz" that contains the binary masks for the left and right AR. In our paper, we used these masks to train TractSeg. The file best_weights_ep110.npz contains the weights after training TractSeg that can be used in inference for targeting the AR. For using these weights on new data, one can use TractSeg with the option "--exp_name best_weights_ep110.npz". Please read the documentation of TractSeg and our paper for more information. If you use the training data or the pre-trained network, please cite our publication: Malin Siegbahn, Cecilia Engmér Berglin, Rodrigo Moreno. Automatic segmentation of the core of the acoustic radiation in humans. Frontiers in Neurology (2022) 13:934650. doi: 10.3389/fneur.2022.934650
DOI: 10.6084/m9.figshare.16553991.v2
title: Machine learning models

description: Machine learning<br>
DOI: 10.17632/82rj8jh8yh.2
title: Datasets: "Impact of textual warnings on emotional brain responses to ultra-processed food products."

description: Background and Objectives: Ultra-processed food products (UPF) have been associated with numerous noncommunicable diseases. Despite this, the addictive nature of UPF, and the aggressive marketing strategies used to promote them, has created a strong emotional connection between UPF and consumers, and supports their increasing UPF global consumption. In view of the emotional link
that consumers often have with UPF, modulating emotional reactions to UPF (by using strategies such as textual warnings) is important in changing consumers’ behavior. Since emotions are better understood by assessing individuals’ implicit reactions, we conducted an electroencephalographic study applying the event-related potential technique to investigate whether textual warnings were
able to modulate the brain responses to UPF stimuli.
Methods: Twenty-six participants (19 women) viewed pictures of UPF preceded by a warning sentence about the health risks of consuming UPF or a control sentence while the electroencephalogram was recorded. In addition, the participants rated each picture in respect of
pleasantness, arousal, and intention to consume. As emotions are associated with motivational circuits in the brain, we focused on a well-known event-related potential brain marker of the motivational relevance associated with emotional stimuli, namely late positive potential (LPP).

Results: The late positive potential amplitude was larger for pictures depicting UPF under the warning condition compared to the control condition, a result that was accompanied by lower pleasantness ratings during the warning condition (compared to the control).

Conclusion: Textual warnings about the negative health consequences of consuming UPF changed the emotional responses toward UPF, possibly increasing the motivation to avoid UPF. These results shed new light on the impact of textual warnings on UPF-evoked emotions.

About this dataset: 
1) The .xlsx table contain processed EEG data (LPP amplitude) and behavoiral data (arousal, pleasantness, and intention to consume). 
2) The sub-folder has the preprocessed EEG data of the participants (.set files from EEGlab). note: adv= warning condition; neutro=control condition; vol = subject.
DOI: 10.6084/m9.figshare.16553991
title: Machine learning models

description: Machine learning<br>
DOI: 10.6084/m9.figshare.16553991.v3
title: Machine learning models

description: Machine learning<br>
DOI: 10.6084/m9.figshare.18585344
title: Variability for cell-wall and yield components in commercial sugarcane (<i>Saccharum spp</i>.) progeny: contrasts with parental lines and energy cane

description: Sugarcane (<i>Saccharum spp</i>.) is a genetically complex crop with great potential for the second-generation (2 G) ethanol industry. Despite this, there is scarce knowledge of the variability of bagasse cell-wall components and its association with agronomic traits that could be used in the selection of cultivars with improved bagasse digestibility. In this work, the acid detergent fiber method was used to determine cellulose, hemicellulose, and acid detergent lignin (ADL) in a sugarcane progeny from crossing two commercial cultivars, and in two energy-cane biotypes. Additionally, acetyl bromide-soluble lignin was determined and compared with ADL values. Despite the crossed parents showing similar bagasse composition, transgressive inheritance observed in the progeny for all bagasse cell-wall components underlines the possibility of improving sugarcane for specific bioenergetic uses. Additionally, the low association between cell-wall and yield components found in this work, suggests that indirect selection of cell-wall components for 2 G ethanol industry through agronomic traits would have a limited impact on improving the biomass composition.
DOI: 10.6084/m9.figshare.18585344.v1
title: Variability for cell-wall and yield components in commercial sugarcane (<i>Saccharum spp</i>.) progeny: contrasts with parental lines and energy cane

description: Sugarcane (<i>Saccharum spp</i>.) is a genetically complex crop with great potential for the second-generation (2 G) ethanol industry. Despite this, there is scarce knowledge of the variability of bagasse cell-wall components and its association with agronomic traits that could be used in the selection of cultivars with improved bagasse digestibility. In this work, the acid detergent fiber method was used to determine cellulose, hemicellulose, and acid detergent lignin (ADL) in a sugarcane progeny from crossing two commercial cultivars, and in two energy-cane biotypes. Additionally, acetyl bromide-soluble lignin was determined and compared with ADL values. Despite the crossed parents showing similar bagasse composition, transgressive inheritance observed in the progeny for all bagasse cell-wall components underlines the possibility of improving sugarcane for specific bioenergetic uses. Additionally, the low association between cell-wall and yield components found in this work, suggests that indirect selection of cell-wall components for 2 G ethanol industry through agronomic traits would have a limited impact on improving the biomass composition.
DOI: 10.5517/ccdc.csd.cc1zrht1
title: CCDC 1839844: Experimental Crystal Structure Determination

description: Related Article: S.I. Zhivetyeva, I.A. Zayakin, I.Yu. Bagryanskaya, E.V. Zaytseva, E.V. Tretyakov|2018|Tetrahedron|74|3924|doi:10.1016/j.tet.2018.05.075
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zrhv2
title: CCDC 1839845: Experimental Crystal Structure Determination

description: Related Article: S.I. Zhivetyeva, I.A. Zayakin, I.Yu. Bagryanskaya, E.V. Zaytseva, E.V. Tretyakov|2018|Tetrahedron|74|3924|doi:10.1016/j.tet.2018.05.075
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zrhw3
title: CCDC 1839846: Experimental Crystal Structure Determination

description: Related Article: S.I. Zhivetyeva, I.A. Zayakin, I.Yu. Bagryanskaya, E.V. Zaytseva, E.V. Tretyakov|2018|Tetrahedron|74|3924|doi:10.1016/j.tet.2018.05.075
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zrhx4
title: CCDC 1839847: Experimental Crystal Structure Determination

description: Related Article: S.I. Zhivetyeva, I.A. Zayakin, I.Yu. Bagryanskaya, E.V. Zaytseva, E.V. Tretyakov|2018|Tetrahedron|74|3924|doi:10.1016/j.tet.2018.05.075
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25yjc1
title: CCDC 2024373: Experimental Crystal Structure Determination

description: Related Article: Hongdao Li, Lu Xi, Pei Jing, Jianke Tang, Qi Wang, Hong Yang, Lijun Zhai, Yulan Niu, Lifeng Ding, Zhenjun Song|2021|J.Mater.Chem.C|9|294|doi:10.1039/D0TC04266H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.