cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.g1n25/21
title: Tillage x Fertility Econ data sample SAS code

description: This is an example of the SAS code used to analyze the final dataset for the Trlica et al. 2017 publication.
DOI: 10.5061/dryad.g743c/1
title: data
DOI: 10.5061/dryad.j9f6m/1
title: Jones_JI_et_al_data from Do agri-environment schemes result in improved water quality_Journal of Applied Ecology.xlsx

description: Data describing physico-chemical parameters, modelled pollutant concentrations and biological condition of 80 catchments in Wales defined by proportion of catchment under available agri-environment schemes.
DOI: 10.5061/dryad.jb3mj/1
title: BaileyDC_Uncertainty_Data_Description

description: An Excel file with 5 worksheets listing the sources for the datasets analysed in the paper: Medical, Particle, Nuclear, Interlab, Constants.
DOI: 10.5061/dryad.kf132/1
title: kinematic data of thrips during meniscus-climbing

description: Time series of instantaneous body position, speed and acceleration of thrips during meniscus ascent on variable sucrose solutions (Brix).
DOI: 10.5061/dryad.mk3k3/1
title: Bitcoin, Litecoin, Peercoin, Ripple, Stellar (Sept 2014-Aug 2015)

description: Weekly time series of cryptocurrency prices with various predictors, including technology, media buzz, liquidity, and supply.
DOI: 10.5061/dryad.n49qg/2
title: Input files

description: We provide here the files used as inputs to simulate neutral dynamics on spatially structured and unstructured archipelagos. Details on the structure of these inputs are given as comments in the algorithms, and simple exemples are provided with the Codes of the models. This data include: the carrying capacities on islands/archipelagos (CarryingCapacities_...txt), the species abundance distributions of the mainland species (Distri_mainland...txt), the matrices of connectivity (Mcon_...txt), and the sampling frequencies on islands/archipelagos (SamplingFrequency...txt).
DOI: 10.5061/dryad.nh109/2
title: Virtual Cursor Task

description: Two-dimensional virtual cursor control task.
DOI: 10.5061/dryad.nh109/3
title: Robotic Arm Reach and Grasping task

description: Robotic Arm Reach and Grasping task of four fixed targets
DOI: 10.5061/dryad.nh109/4
title: Robotic Arm Reach and Grasping task

description: Robotic Arm Reach and Grasping task of five fixed targets
DOI: 10.5061/dryad.nh109/5
title: Robotic Arm Reach and Grasping task

description: Robotic Arm Reach and Grasping task of a randomly located target
DOI: 10.5061/dryad.nh109/6
title: Robotic Arm Reach and Grasping task

description: Robotic Arm Reach and Grasping task of moving a target from table onto a shelf.
DOI: 10.5061/dryad.nh109/7
title: Readme

description: Instruction of how to use the data
DOI: 10.5061/dryad.pc303/1
title: GenInfo Identifiers_Garcia et al., 2016_MolEcol

description: The excel file keeps GenInfo Identifiers (gi) numbers of all proteins identified in Mussismilia braziliensis healthy and affected by Whit-plague Syndrome and Black Band Diseased from Abrolhos Bank area, in Brazil.
DOI: 10.5061/dryad.pm29d/1
title: primary_data

description: Plant-pollinator interaction data of the studies used in the analysis.
DOI: 10.5061/dryad.q8q11/1
title: List of identified SNPs- Syncerus caffer

description: The excel file contains the list of 'Single Nucleotide Polymorphism' markers that were identified within the African buffalo species (4 subspecies included). A legend to each column is provided.
DOI: 10.5061/dryad.s73t1/1
title: dataset_legrand_et_al_procs
DOI: 10.5061/dryad.tk0b8/49
title: Anterodorsal view of head of I. tobini n. sp. with mouth open showing dorsal surface of left gnathochilarial stipe with unidentified brush-like structure (Fig. 19E)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/50
title: Ventral view of posterior rings of I. tobini n. sp. (Fig. 19F)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.vb6k6/1
title: Survival time

description: Data structure is as follow: {C, S1, S2, A, D}, where C is the clonal line of the individual (LM7 = 1, PAM10 = 2 and PAM7 = 3); S1 and S2 are the  salinities during phase 1 and 2 of the experiment (40, 80, 120 or 180g/L); A is the last day the individual was seen alive, after entering the experiment on day 1; D is the first day the individual was seen dead (D = 10 000 for censored individuals by convention).
DOI: 10.5061/dryad.vb6k6/2
title: Survival Analysis

description: Mathematica notebook implementing the maximum likelihood method of our modified survival analysis. Allows parameter estimation and model comparison, as well as reproducing the figures in the article.
DOI: 10.5061/dryad.0g794/1
title: Complete data set

description: Farmland bird inventory data (species richness and abundance) was collected through the Swedish Volunteer & Farmer Alliance. A Read me, including explanations for each column, is found in the second tab of the xlsx-file.
DOI: 10.5061/dryad.0gs71/1
title: ElephantPopulation

description: Count data for elephant populations.
DOI: 10.5061/dryad.0gs71/2
title: Size Structure

description: Distribution of species and their sizes used to calculate changes in abundance of large trees
DOI: 10.5061/dryad.0gs71/3
title: Woody Biomass

description: Woody biomass data across the plots used to calculate all plot-level woody biomass results.
DOI: 10.5061/dryad.0rf76/1
title: arvalis_survival

description: Excel file for arvalis survival: first column is the population ID, second column is the male ID, third column is the female ID, fourth column is pH treatment, fifth column is block, sixth column is the place where the experimental unite located, seventh column is the starting number of eggs, eighth column is the fertilized eggs, ninth column is the final survival embryos.
DOI: 10.5061/dryad.0rf76/2
title: temporaria_survival

description: Excel file for temporaria survival: first column is the population ID, second column is the male ID, third column is the female ID, fourth column is pH treatment, fifth column is block, sixth column is the place where the experimental unite located, seventh column is the starting number of eggs, eighth column is the fertilized eggs, ninth column is the final survival embryos.
DOI: 10.5061/dryad.0rf76/3
title: Phenotyping of egg jelly

description: Excel file: first column is the individual ID, second column is the species, third column is the population ID, fourth to thirteen columns are molecular mass of jelly bands.
DOI: 10.5061/dryad.0rf76/5
title: zeta_potential

description: Excel file for zeta potential: first column is the individual ID, second column is the species, third column is the population ID, fourth column is the zeta potential.
DOI: 10.5061/dryad.17h1b/1
title: Raw data of paper entitle "ACC deaminase-producing rhizosphere bacteria modulate plant responses to flooding".

description: This excel file covers the raw data of paper entitle "ACC deaminase-producing rhizosphere bacteria modulate plant responses to flooding". This includes the data of short term and long term Rumex palustris under 3 and 17 day submergence. The data also covers the raw data about the effect of ACC deaminase producing bacteria and ACC deaminase deficient mutant on plant submergence response (table 1-3 of supporting materials). Data were collected in glasshouse and laboratory of Utrecht University. Abbreviations: Wild-Bac, ACC deaminase bacteria; Mutant-Bac, ACC deaminase deficient mutant; No-Bac, control without bacteria inoculation; Ethylene, Post submergence ethylene production; FreshRoots, fresh weight of root; Freshshoot, fresh weight of shoot; Dryroot, Dry weight of root; Dryshoot, Dry weight of shoot.
DOI: 10.5061/dryad.34gm6/2
title: DS-ZYPAN_specimens_sequences

description: Specimen Data and COI-5P sequences in json format
DOI: 10.5061/dryad.34n83/1
title: Site List

description: A list of sites from which we collected data 2010 - 2012. Site name, the restoration stage and habitat type, county and locality information as well as total preserve size (each site was 1-ha designated within the larger preserves) and any management history information known my land managers is included.
DOI: 10.5061/dryad.34n83/2
title: Bee species by collection event

description: List of total number of individuals per bee species collected at each site; split per visit. Each site was visited 3x per year, except those designated in the Site List file as new additions in 2011. Contact Rebecca Tonietto if more descriptive data (e.g., by collection type) is requested.
DOI: 10.5061/dryad.34n83/3
title: Blooming plant cover and ground cover

description: Raw data of ground cover and blooming plant cover per collection event date. Sites described in "Site list" file.
DOI: 10.5061/dryad.3jd08/1
title: Genotypes

description: Genotypes of Cebus capuchin imitator at Santa Rosa, Costa Rica (20 STR)
DOI: 10.5061/dryad.3jd08/2
title: Female Reproduction

description: Annual reproduction of female Cebus capuchinus imitator and predictor variables (number of males and male relatedness)
DOI: 10.5061/dryad.3jd08/3
title: Infant Survival

description: Survival of infant Cebus capuchinus imitator to one year of age and predictor variables (number of males and male relatedness)
DOI: 10.5061/dryad.3jd08/4
title: Alpha Reproductive Success

description: Reproductive success of alpha male Cebus capuchinus imitator and predictor variables (number of males, male relatedness, resource holding potential, male age, subordinate male age, number of females, number of infants, male tenure, male-mother kinship)
DOI: 10.5061/dryad.3qk84/1
title: Garzón-Ospina et al.,- 2016 - BMC Evolutionary Biology, sequences and alignments

description: MSP7 sequences and alignments used in Evidence of functional divergence in MSP7 paralogous proteins: a molecular-evolutionary and phylogenetic analysis
DOI: 10.5061/dryad.3qr6j/1
title: GeneConservation

description: Text file of sequences aligned for gene conservation calculations. Conservation scores from alignments of 100 vertebrate species (known as UCSC hg19phastCons) were annotated with the phastCons100way.UCSC.hg19 package (R/Bioconductor).
DOI: 10.5061/dryad.412gv/1
title: Primate Data (10k Trees)

description: Primate data on baculum presence, intromission duration, mating system and breeding seasonality.
DOI: 10.5061/dryad.412gv/2
title: Carnivora Data (10k Trees)

description: Carnivore data on baculum presence and intromission duration
DOI: 10.5061/dryad.412gv/3
title: Primate Data (Mammal Supertree)

description: Primate data on baculum presence
DOI: 10.5061/dryad.412gv/4
title: Carnivora Data (Mammal Supertree)

description: Carnivora data on baculum presence.
DOI: 10.5061/dryad.4663t/1
title: XYZ molecular dynamics trajectory file for Nup42

description: This is a CG MD simulation of Nup42 in Baker's Yeast.
DOI: 10.5061/dryad.4663t/2
title: XYZ molecular dynamics trajectory file for Nup49

description: This is a CG MD simulation of Nup49 in Baker's Yeast.
DOI: 10.5061/dryad.4663t/3
title: XYZ molecular dynamics trajectory file for Nup57

description: This is a CG MD simulation of Nup57 in Baker's Yeast.
DOI: 10.5061/dryad.4663t/4
title: Contact probability for Nup57

description: Contact probability for Nup57
DOI: 10.5061/dryad.4663t/5
title: Contact Probability for Nup49

description: Contact Probability for Nup49
DOI: 10.5061/dryad.4663t/6
title: Contact Probability for Nup42

description: Contact Probability for Nup42
DOI: 10.5061/dryad.5s3v5/1
title: Root_length_Heterogeneity

description: Presented are data of root length (in mm) for each single root per minirhizotron image within a specific minirhizotron tube, sampled on a specific sampling date (June, August, September).The file is a modified output of Rootfly, the program with which root length was determined.
DOI: 10.5061/dryad.63k11/1
title: Supplementary Figure 1

description: Cladogram for Neognathae, which includes 71 of the 83 species and 46 of the 49 families used in this study. Calibration of branches (in Myr) and the basal relationships up to the family level followed to Prum et al. (2015). Clade colours also are coded as Prum´s paper: red – Galloanserae; brown – Strisores; purple – Columbaves; yellow – Gruiformes; blue – Aequoritornithes; green – Inopinaves. Intraclade relationships that could not be established and calibrated in our dataset using Prum et al. (2015), were resolved using the specific references indicated by the numbers nearby corresponding clades: 1 – Columba (Jetz et al. 2012); 2 – Rallidae (García-R et al. 2014); 3 – Laridae (Jetz et al. 2012); 4 – Alcidae (Pereira et al. 2008); 5 – Sulidae (Patterson et al. 2011); 6 – Accipitridae (Jetz et al. 2012); 7 – Picidae (Jetz et al. 2012); 8 – Alcedinidae (Jetz et al. 2012); 9 – Psittacidae (Braun et al. 2011); 10 – Cacatuidae (White et al. 2011); 11 – Corvoidea (Kennedy et al. 2012); 12 – Artamidae (Jetz et al. 2012); 13 – Alaudidae (Jetz et al. 2012); 14 – Turdidae (Nylander et al. 2008).References Braun, E. L., et al. (2011). Homoplastic microinversions and the avian tree of life. BMC Evolutionary Biology, 11(1), 141.Garcia-R, J. C., Gibb, G. C., and Trewick, S. A. (2014). Deep global evolutionary radiation in birds: Diversification and trait evolution in the cosmopolitan bird family Rallidae. Molecular Phylogenetics and Evolution, 81, 96-108.Jetz, W., Thomas, G. H., Joy, J. B., Hartmann, K., and Mooers, A. O. (2012). The global diversity of birds in space and time. Nature, 491(7424), 444-448.Kennedy, J. D., Weir, J. T., Hooper, D. M., Tietze, D. T., Martens, J., and Price, T. D. (2012). Ecological limits on diversification of the Himalayan core Corvoidea. Evolution, 66(8), 2599-2613.Nylander, J. A., Olsson, U., Alström, P., and Sanmartín, I. (2008). Accounting for phylogenetic uncertainty in biogeography: a Bayesian approach to dispersal-vicariance analysis of the thrushes (Aves: Turdus). Systematic Biology, 57(2), 257-268.Pereira, S. L., and Baker, A. J. (2008). DNA evidence for a Paleocene origin of the Alcidae (Aves: Charadriiformes) in the Pacific and multiple dispersals across northern oceans. Molecular Phylogenetics and Evolution, 46(2), 430-445.Patterson, S. A., Morris-Pocock, J. A., and Friesen, V. L. (2011). A multilocus phylogeny of the Sulidae (Aves: Pelecaniformes). Molecular Phylogenetics and Evolution, 58(2), 181-191.White, N. E., et al. (2011). The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae). Molecular Phylogenetics and Evolution, 59(3), 615-622.
DOI: 10.5061/dryad.63k11/2
title: Supplementary Table 1

description: Dataset of non-neornithine Mesozoic birds
DOI: 10.5061/dryad.63k11/3
title: Supplementary Table 2

description: Dataset of modern birds
DOI: 10.5061/dryad.689d2/1
title: Genotypes matrix (markers x samples)

description: Genotypes matrix (markers x samples) as comma-separated values.  First six headers are chromosome, marker name, genetic position (cM), physical position (bp, in build mm10/GRCm38 of the mouse reference genome), reference allele ("A1"), alternate allele ("A2").  Remaining column headers are sample names.
DOI: 10.5061/dryad.689d2/2
title: Genotypes in PLINK binary format (*.bed; 1 of 3)

description: Genotypes for reference samples in PLINK binary format.  The PLINK format entails three separate files: *.bed (binary-encoded genotypes), *.bim (marker map) and *.fam (sample metadata).
DOI: 10.5061/dryad.689d2/3
title: Genotypes in PLINK binary format (*.bim; 2 of 3)

description: Genotypes for reference samples in PLINK binary format.  The PLINK format entails three separate files: *.bed (binary-encoded genotypes), *.bim (marker map) and *.fam (sample metadata).
DOI: 10.5061/dryad.689d2/4
title: Genotypes in PLINK binary format (*.fam; 3 of 3)

description: Genotypes for reference samples in PLINK binary format.  The PLINK format entails three separate files: *.bed (binary-encoded genotypes), *.bim (marker map) and *.fam (sample metadata).
DOI: 10.5061/dryad.689d2/5
title: Genotypes as a compressed R data object (*.rds)

description: Genotypes matrix (markers x samples) as an R data object for use with the `argyle` package (https://github.com/andrewparkermorgan/argyle).  The object itself is just a matrix, with marker and sample metadata as attributes.  For details see the `argyle` manuscript: Morgan AP (2016) argyle: an R package for analysis of Illumina genotyping arrays. G3 6: 281-286. http://www.g3journal.org/content/6/2/281
DOI: 10.5061/dryad.6bm2c/1
title: Acceleration data from a Verreaux's eagle

description: This file contains the dataset analysed in the associated publication under section "Real data examples", subsection "Modelling activity data in a soaring raptor".
DOI: 10.5061/dryad.6bm2c/2
title: Acceleration data from a blacktip reef shark

description: This file contains the dataset analysed in the associated publication under section "Real data examples", subsection "Diel activity changes in a reef-associated shark".
DOI: 10.5061/dryad.6v834/1
title: Graded responses from the electroretinograms.

description: This file contains the graded responses for each individual electroretinogram. The first column corresponds to the wavelength (lambda) and the remaining columns to the response (in mV). The results are organized by species (virgo/splendens), sex (female/male) and eye region (dorsal/ventral).
DOI: 10.5061/dryad.6v834/2
title: Reflectance spectra from natural backgrounds.

description: This file contains reflectance spectra for the backgrounds. The first column corresponds to wavelength (wl) and each of the remaining columns to individual backgrounds (bkg1 to bkg78, in percentage of reflectance).
DOI: 10.5061/dryad.6v834/3
title: Reflectance spectra of damselfly wings.

description: This compressed file contains the reflectance spectra data for each individual damselfly. The folders are organized by sex (male/female), then by population, and then by species (virgo/splendens). The sympatric populations are: Focks, Husby, Länna, Skytt, Stora and Valsk. The allopatric populations for C. virgo are Ekdal, Flenm, Läbyv, Nackb, Riala and Svana. The allopatric populations for C. splendens are Bergs, Gurre, Hällby, Orsun, Vatve and Vikst. Each individual file is named as follows: Population_sex (m for male/f for female) species (v for virgo/s for splendens)_individual number_repeated measurement. For example Hallb_fs_05_02 means that this individual was captured at Hallb population, it is the splendens female number 5, and this is the second repeated measurement.
DOI: 10.5061/dryad.7cv4g/20
title: HWN_variable_1.r2.fastq

description: raw reads from coral of Houwan with variable temperature conditions#1 (right side)
DOI: 10.5061/dryad.7cv4g/21
title: HWN_variable_2.r1.fastq

description: raw reads from coral of Houwan with variable temperature conditions#2 (left side)
DOI: 10.5061/dryad.7cv4g/22
title: HWN_variable_2.r2.fastq

description: raw reads from coral of Houwan with variable temperature conditions#2 (right side)
DOI: 10.5061/dryad.7cv4g/23
title: HWN_variable_3.r1.fastq

description: raw reads from coral of Houwan with variable temperature conditions#3 (left side)
DOI: 10.5061/dryad.7cv4g/24
title: HWN_variable_3.r2.fastq

description: raw reads from coral of Houwan with variable temperature conditions#3 (right side)
DOI: 10.5061/dryad.7cv4g/25
title: Raw expression data

description: Fragments per kilo bases mapped data
DOI: 10.5061/dryad.83s93/1
title: Ambient sound data from mooring AWI_230_6

description: A NetCDF file containing the ambient sound spectra and metadata from mooring AWI_230_6
DOI: 10.5061/dryad.83s93/2
title: Ambient sound data from mooring AWI_232_9

description: A NetCDF file containing the ambient sound spectra and metadata from mooring AWI_232_9
DOI: 10.5061/dryad.9rb13/1
title: Ostracod dataset

description: Table S1 in MS Excel format. This is the data file for the R code "Yasuharaetal_JB_code.R". This is the entire dataset, and other datasets here are a subset of this dataset.
DOI: 10.5061/dryad.b7m47/1
title: S.diploproa_recruit_genotypes

description: Microsatellite (20 loci) genotype data from 491 juvenile Sebastes diploproa recruiting to Oregon in September 2013.
DOI: 10.5061/dryad.b7m47/2
title: S.diploproa_referencePop_genotypes

description: Microsatellite (20 loci) genotipe data of 94 adult Sebastes diploproa collected off the Oregon Coast in May-July 2015.
DOI: 10.5061/dryad.bq015/1
title: RawPlatformDigitizedPoints

description: The raw digitized forelimb points in three dimensions
DOI: 10.5061/dryad.bq015/2
title: AnimalInfoArmAnglePaper2

description: hop events timing (takeoff, touchdown, etc) by hop
DOI: 10.5061/dryad.cp4j7/1
title: MetacontrastOpticNeuritis

description: The zip-file includes single subject data for the main study (8 healthy controls, 9 patients) and the control study (4 healthy controls) in MATLAB format. Each data file contains a variable trialMatrix in which each line corresponds to a trial in the experiment. The variable columnLabels describes the columns. Left and right is coded as -1 and 1, respectively. For "side" 1 codes above and 2 codes below fixation.
DOI: 10.5061/dryad.d52p3/1
title: Aphid performance datasheet

description: Datasheet containing aphid performance measurements on plants inoculated with aphids
DOI: 10.5061/dryad.d52p3/2
title: Amino acid datasheet

description: File containing individual amino acid concentrations for all runs and treatments
DOI: 10.5061/dryad.d7j02/1
title: Grouper, reef structural complexity and structural stability data from the Lakshadweep archipelago

description: This dataset is from Karkarey, R., Kelkar, N., Lobo, A.S. et al. Coral Reefs (2014) 33:289–302.DOI 10.1007/s00338-013-1117-y
DOI: 10.5061/dryad.dm437/5
title: Key to allele names

description: key to allele names used in the data file "APCcoxme input (n=116)".
DOI: 10.5061/dryad.f9f75/1
title: Velocity data for 12 Cape Race streams

description: Velocity (m/s) measurements measured in the field on cross-sections in 12 streams between 2010 and 2016. Pop; genetically distinct brook trout populations.
DOI: 10.5061/dryad.f9f75/2
title: Individual genotypes for 12 brook trout populations

description: Individual genotype data from 12 microsatellites in 12 brook trout populations sampled from 2009-2015.
DOI: 10.5061/dryad.gt57f/1
title: Hite_MS_Chytrid

description: These are the mean data used for analyses and figures in the main manuscript as well as the supplementary materials
DOI: 10.5061/dryad.gt57f/2
title: Hite et al. Chytrid_field_incubation

description: This file contains data used in the in-situ experiment to test the effects of incident UVR exposure on Bd zoospore survival.
DOI: 10.5061/dryad.gt57f/3
title: Hite_et_al_Dryad_upload

description: This file contains all of the data used in the paper and electronic supplementary material (Figs. 1-6 and Table S1, Fig. S1).
DOI: 10.5061/dryad.jp8n4/1
title: Lifespan

description: Data on lifespan for all individuals in MS.
DOI: 10.5061/dryad.nk3b3/1
title: Sequence file_Alvinella pompejana

description: The file includes population DNA sequences from 12 loci of hydrothermal vent polychaete Alvinella pompejana in the East Pacific Ocean: DNA sequences of non-recombinant segments used for IMa2, and muli-loci genotypes of nuclear genes used for STRUCTURE. Information of sampling localities is given in the readme file.