cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/3068766f49e623c5e2baa3efed024261
title: Harmonic Baseline Experiments for Landsat-Based Forest Condition Monitoring in Southern New England 2017

description: This dataset was developed as part of a study of harmonic baseline model parameterization for forest condition monitoring using Landsat time series. We implemented a previously published harmonic modeling approach for forest condition monitoring in Google Earth Engine and systematically assessed the relative ability of condition change products generated using various model parameterizations for predicting pest abundances and defoliation during the 2016-2018 gypsy moth (Lymantria dispar) outbreak in southern New England. We ran a series of 32 experiments that considered a variety of parameter choices for establishing multi-year “baseline” models representing relatively stable forest conditions for each Landsat pixel in our study area. We tested a full set of factors including (a) spectral vegetation index used for model fitting, (b) baseline-modeling period, (c) frequencies of harmonic regression terms, and (d) differences in Landsat time series input imagery. We generated average condition score estimates for each of these 32 baseline parameterizations for a May 1 to September 30, 2017 monitoring period, then used Generalized Linear Mixed Models to test the relationships between ground-based observations of defoliation and defoliator abundance (larva and egg masses). This archived dataset includes the full set of experimental raster results, as well as a “reanalysis” product from a previous implementation of our condition monitoring workflow. More information on model parameterization rankings can be found in the associated publication (Pasquarella et al. 2021).
DOI: 10.6073/pasta/9e1762c901e409eed75f2c505e093dd6
title: CSM01 Seasonal Summary of Numbers of Small Mammals on 14 LTER Traplines in Prairie Habitats at Konza Prairie (Reformatted to the ecocomDP Design Pattern)

description: This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-knz/88/8. The abstract below was extracted from the Level 0 data package and is included for context: Data set contains seasonal summaries (spring and autumn) of the number of individuals of each species of small mammal captured (relative abundance) on each grassland trapline. Each record contains year, season, trapline and number of individuals captured of each species. These live trap records are based on daily captures during two 4-day trapping periods in spring (late February to early April) and autumn (early October to mid-November) for each of 14 permanent traplines established on seven fire-grazing treatments (two traplines per treatment). These seven fire-grazing treatments include three sites that are grazed by bison (1 unburned, 1 annual burn and 1 4-year burn) and four sites that are not grazed by bison (1 unburned, 1 annual burn and 2 4-year burn).
DOI: 10.6084/m9.figshare.15101979
title: Supporting data and R scripts for: Predictors of human RNA virus discovery in the United States, China and Africa

description: The file folder includes the raw data for human-infective RNA virus data in three regions, a set of spatial predictors, and codes used to generate figures and tables.<br>In the folder for each region, files include the cleaned version of the raw data, R codes and results for the main model, model prediction and model validation. The last folder includes R codes used to combine figures for three regions.
DOI: 10.6084/m9.figshare.15101979.v1
title: Supporting data and R scripts for: Predictors of human RNA virus discovery in the United States, China and Africa

description: The file folder includes the raw data for human-infective RNA virus data in three regions, a set of spatial predictors, and codes used to generate figures and tables.<br>In the folder for each region, files include the cleaned version of the raw data, R codes and results for the main model, model prediction and model validation. The last folder includes R codes used to combine figures for three regions.
DOI: 10.6073/pasta/f22e7afe924dac3799787ad36155fe69
title: CSM01 Seasonal Summary of Numbers of Small Mammals on 14 LTER Traplines in Prairie Habitats at Konza Prairie (Reformatted to a Darwin Core Archive)

description: This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/343/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-knz/88/8. The abstract below was extracted from the Level 0 data package and is included for context: Data set contains seasonal summaries (spring and autumn) of the number of individuals of each species of small mammal captured (relative abundance) on each grassland trapline. Each record contains year, season, trapline and number of individuals captured of each species. These live trap records are based on daily captures during two 4-day trapping periods in spring (late February to early April) and autumn (early October to mid-November) for each of 14 permanent traplines established on seven fire-grazing treatments (two traplines per treatment). These seven fire-grazing treatments include three sites that are grazed by bison (1 unburned, 1 annual burn and 1 4-year burn) and four sites that are not grazed by bison (1 unburned, 1 annual burn and 2 4-year burn).
DOI: 10.5281/zenodo.5160379
title: Madidi Project Full Dataset

description: This item contains <strong>version 5.0</strong> of the Madidi Project's full dataset. The zip file contains (1) raw data, which was downloaded from Tropicos (www.tropicos.org) on August 18, 2020; (2) R scripts used to modify, correct, and clean the raw data; (3) clean data that are the output of the R scripts, and which are the point of departure for most uses of the Madidi Dataset; (4) post-cleaning scripts that obtain additional but non-essential information from the clean data (e.g. by extracting environmental data from rasters); and (5) a miscellaneous collection of additional non-essential information and figures. This item also includes the <strong>Data Use Policy</strong> for this dataset. The core dataset of the Madidi Project consists of a network of ~500 forest plots distributed in and around the Madidi National Park in Bolivia. This network contains 50 permanently marked large plots (1-ha), as well as &gt;450 temporary small plots (0.1-ha). Within the large plots, all woody individuals with a dbh ≥10 cm have been mapped, tagged, measured, and identified. Some of these plots have also been re-visited and information on mortality, recruitment, and growth exists. Within the small plots, all woody individuals with a dbh ≥2.5 cm have been measured and identified. Each plot has some edaphic and topographic information, and some large plots have information on various plant functional traits. The Madidi Project is a collaborative research effort to document and study plant biodiversity in the Amazonia and Tropical Andes of northwestern Bolivia. The project is currently lead by the Missouri Botanical Garden (MBG), in collaboration with the Herbario Nacional de Bolivia. The management of the project is at MBG, where J. Sebastian Tello (sebastian.tello@mobot.org) is the scientific director. The director oversees the activities of a research team based in Bolivia. MBG works in collaboration with other data contributors (currently: Manuel J. Macía [manuel.macia@uam.es], Gabriel Arellano [gabriel.arellano.torres@gmail.com] and Beatriz Nieto [sonneratia@gmail.com]), with a representative from the Herbario Nacional de Bolivia (LPB; Carla Maldonado [carla.maldonado1@gmail.com]), as well as with other close associated researchers from various institutions. For more information regarding the organization and objectives of the Madidi Project, you can visit the project’s website (<strong>www.madidiproject.weebly.com</strong>).
description: The Madidi project has been supported by generous grants from the National Science Foundation (DEB 0101775, DEB 0743457, DEB 1836353), and the National Geographic Society (NGS 7754-04 and NGS 8047-06). Additional financial support for the Madidi Project has been provided by the Missouri Botanical Garden, the Comunidad de Madrid (Spain), the Universidad Autónima de Madrid, and the Taylor and Davidson families.
DOI: 10.5281/zenodo.4276557
title: Madidi Project Full Dataset

description: This item contains <strong>version 5.0</strong> of the Madidi Project's full dataset. The zip file contains (1) raw data, which was downloaded from Tropicos (www.tropicos.org) on August 18, 2020; (2) R scripts used to modify, correct, and clean the raw data; (3) clean data that are the output of the R scripts, and which are the point of departure for most uses of the Madidi Dataset; (4) post-cleaning scripts that obtain additional but non-essential information from the clean data (e.g. by extracting environmental data from rasters); and (5) a miscellaneous collection of additional non-essential information and figures. This item also includes the <strong>Data Use Policy</strong> for this dataset. The core dataset of the Madidi Project consists of a network of ~500 forest plots distributed in and around the Madidi National Park in Bolivia. This network contains 50 permanently marked large plots (1-ha), as well as &gt;450 temporary small plots (0.1-ha). Within the large plots, all woody individuals with a dbh ≥10 cm have been mapped, tagged, measured, and identified. Some of these plots have also been re-visited and information on mortality, recruitment, and growth exists. Within the small plots, all woody individuals with a dbh ≥2.5 cm have been measured and identified. Each plot has some edaphic and topographic information, and some large plots have information on various plant functional traits. The Madidi Project is a collaborative research effort to document and study plant biodiversity in the Amazonia and Tropical Andes of northwestern Bolivia. The project is currently lead by the Missouri Botanical Garden (MBG), in collaboration with the Herbario Nacional de Bolivia. The management of the project is at MBG, where J. Sebastian Tello (sebastian.tello@mobot.org) is the scientific director. The director oversees the activities of a research team based in Bolivia. MBG works in collaboration with other data contributors (currently: Manuel J. Macía [manuel.macia@uam.es], Gabriel Arellano [gabriel.arellano.torres@gmail.com] and Beatriz Nieto [sonneratia@gmail.com]), with a representative from the Herbario Nacional de Bolivia (LPB; Carla Maldonado [carla.maldonado1@gmail.com]), as well as with other close associated researchers from various institutions. For more information regarding the organization and objectives of the Madidi Project, you can visit the project’s website (<strong>www.madidiproject.weebly.com</strong>).
description: The Madidi project has been supported by generous grants from the National Science Foundation (DEB 0101775, DEB 0743457, DEB 1836353), and the National Geographic Society (NGS 7754-04 and NGS 8047-06). Additional financial support for the Madidi Project has been provided by the Missouri Botanical Garden, the Comunidad de Madrid (Spain), the Universidad Autónima de Madrid, and the Taylor and Davidson families.
DOI: 10.18739/a2pz51n39
title: Thermal Controls on Ice Stream Shear Margins, Antarctica, December 2020

description: Ice stream discharge responds to a balance between gravity, basal friction, and lateral drag. Appreciable viscous heating occurs in shear margins between ice streams and adjacent slow-moving ice ridges. Crucially, the temperature-dependent viscosity distribution connects lateral drag to marginal strain-rates that integrate to determine ice stream velocity. Temperate zones can develop and accommodate much faster flow, however, ice ridges supply cold ice that drives advective cooling, and reduces this tendancy. In Hunter and coworkers, "Thermal Controls on Ice Stream Shear Margins", J. Glaciology, 2021, we present a two-dimensional (three velocity component), steady-state model designed to explore the thermal controls on ice stream shear margins, and identify key scalings for the emergence of temperate conditions within an idealized cross-section. Here, we include the data that we generated using the commercial finite element software, COMSOL, and displayed using m-files in Matlab in Figures 3, 4, 7 and 8 from that publication. This represents the output of parameter sweeps that examine changes in behavior with changing control parameters chosen to span a range of conditions that are observed or inferred for Antarctic ice streams.
DOI: 10.5066/p98u11rg
title: Population genetic data for flathead catfish from the Susquehanna and Delaware River basins in Pennsylvania and Maryland, USA

description: This dataset includes microsatellite genotypes for 137 flathead catfish from the Susquehanna River and Delaware River basins in Pennslyvania and Maryland, USA. Each individual was genotyped at 13 loci. Additional information about sex, capture date, and size are also provided for most individuals.
DOI: 10.6084/m9.figshare.1455478
title: Seattle Street Clock Database

description: This spreadsheet contains three tables: Clocks, Owners, and Evidence - Clocks tab's name column and Owners tab's corporation column keys in Evidence. - Evidence is a list of every unique fact I have via newspaper, photograph, document, or otherwise about when a clock was in a particular location, and who owned it at that time. v1 has 1033 pieces of evidence. Please contact me if you have additions or find errors in my data. I will be refreshing this periodically. I constantly find new resources. Along with my friend Paul Middents we have proven the connection between many owners, and I know that there will be more discoveries to show which clocks were later owned by another jeweler.<br><br>A few notes on fields: <br>- In Evidence, "Var_Year" indicates a +/- value on the Source_Year. Empty means exact. 0 means it was the first year that the clock was at that location. - If the Source_Type is Photograph, Source_ID has a value, and there is no URL, then I have the photo on my harddrive but can't post it. - In Clocks, if the Unique field is Yes, then I'm sure that this clock cannot be matched with any other clocks in the list. There are 114 clocks in the list which is excessive. It should be down closer to 60. - There are a growing number of sign and facade clocks in the database. On the linked page I will maintain a list of open questions, and areas I know I need to work on.
DOI: 10.6084/m9.figshare.1455478.v12
title: Seattle Street Clock Database

description: This spreadsheet contains three tables: Clocks, Owners, and Evidence - Clocks tab's name column and Owners tab's corporation column keys in Evidence. - Evidence is a list of every unique fact I have via newspaper, photograph, document, or otherwise about when a clock was in a particular location, and who owned it at that time. v1 has 1033 pieces of evidence. Please contact me if you have additions or find errors in my data. I will be refreshing this periodically. I constantly find new resources. Along with my friend Paul Middents we have proven the connection between many owners, and I know that there will be more discoveries to show which clocks were later owned by another jeweler.<br><br>A few notes on fields: <br>- In Evidence, "Var_Year" indicates a +/- value on the Source_Year. Empty means exact. 0 means it was the first year that the clock was at that location. - If the Source_Type is Photograph, Source_ID has a value, and there is no URL, then I have the photo on my harddrive but can't post it. - In Clocks, if the Unique field is Yes, then I'm sure that this clock cannot be matched with any other clocks in the list. There are 114 clocks in the list which is excessive. It should be down closer to 60. - There are a growing number of sign and facade clocks in the database. On the linked page I will maintain a list of open questions, and areas I know I need to work on.
DOI: 10.6084/m9.figshare.15082665
title: Marble workers study data July 2021.xlsx

description: Dataset in Excel file as suggested by the Journal
DOI: 10.6084/m9.figshare.15082665.v1
title: Marble workers study data July 2021.xlsx

description: Dataset in Excel file as suggested by the Journal
DOI: 10.6084/m9.figshare.15082707
title: Marble study data Code Sheet.docx

description: Code sheet for Marble study data in Excel file
DOI: 10.6084/m9.figshare.15082707.v1
title: Marble study data Code Sheet.docx

description: Code sheet for Marble study data in Excel file
DOI: 10.6084/m9.figshare.14642502
title: SARS-CoV-2 disease severity and transmission efficiency is increased for airborne compared to fomite exposure in Syrian hamsters

description: SARS-CoV-2 transmission in hamsters showing that disease severity and transmission efficiency is routes of transmission dependent.
DOI: 10.15468/8nbqgb
title: Isoptera of Guam

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Light, S. F. (1946): Isoptera of Guam. In: Insects of Guam II. java - jar GgImagineUploader. jar " DATA = C: \ Users \ poa \ Documents \ Batch \ Insects of Guam \ Accepted " HOST = https: // tb. plazi. org / GgServer / proxy AUTH = carolina: carsok: Bernice P. Bishop Museum: 9, DOI: http://doi.org/10.5281/zenodo.5160243
DOI: 10.6084/m9.figshare.3761562.v1940
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.18739/a2k649t8c
title: Physical and chemical parameters in the water column of Lake 578, southern Greenland 2016-2019

description: This dataset includes physical and chemical parameters in the water column of Lake 578 (61.08° North, 45.61° West), southern Greenland. In order to validate the application of a relatively new paleothermometer (branched glycerol dialkyl glycerol tetraether) in the Arctic, Lake 578 was selected as a suitable location, because human activity in the lake catchment today is minimal, and vegetation in the area is relatively stable. Therefore, the physical and chemical parameters of Lake 578 were investigated. Lake water temperature at 2.5 meters (m) (since summer 2017), 5 m, 7.5 m, 10 m, 12.5 m (since summer 2018), and 14 m depth with 6 hour resolution were measured with Onset HOBO UTBI-001 TidbiT temperature data loggers from summer 2016 to summer 2019. Temperature, specific conductivity, pH, and dissolved oxygen were measured with a Hydrolab MS5 in the summers of 2016, 2017, 2018, and 2019.
DOI: 10.5281/zenodo.5160602
title: Spike variant predictions

description: Spike variant glycosylation predictions. (spike_mut_idx.v3.xlsx) &gt; Glycoimpact*: likelihood the glycosylation of a proximal site is perturbed &gt; mannoseDist*: aggregate Fisher log-OR for any high-mannose (&gt;5mannose) structure (taken from IMRs). LIkelihood high-mannose structures, in general, will increase or decrease &gt; IMR - Expected Change: a combination of proximity information with mannoseDist to estimate joint effect &gt; IMR/InSaNNE prediction: predictions of differential glycosylation from IMRs or InSaNNE respectively *_seq refers to sequence-based predictions, _str refers to structure-based predictions Generating R code is also provided without raw-data ----- Update v4: Mannose/Complex column updated to Mannose/ Complex+hybrid in v5 v5: Mannose+hybrid / Complex column added (one prediction changed). This column is more relevant to the validation observations.
DOI: 10.15468/kzhjyq
title: Halictine Bees from Rota Island

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Cockerell, T. D. A. (1942): Halictine Bees from Rota Island. In: Insects of Guam I. Honolulu, Hawaii: Bernice P. Bishop Museum: 191-194, DOI: http://doi.org/10.5281/zenodo.5160456
DOI: 10.15468/nqb8zu
title: Bees of Guam

description: This dataset contains the digitized treatments in Plazi based on the original book chapter CockerellL, T. D. A. (1942): Bees of Guam. In: Insects of Guam I. Honolulu, Hawaii: Bernice P. Bishop Museum: 188-190, DOI: http://doi.org/10.5281/zenodo.5160372
DOI: 10.13011/m3-7j8w-a572
title: Investigating the effects of dendrite evolution on microsegregation in Al-Cu alloys using coupled experimental study, micro-modeling and phase field simulation
DOI: 10.6084/m9.figshare.14687625
title: Supporting Tables: Species Habitat Models Used in the Map of Biodiversity Importance

description: This dataset provides summary tables describing (a) environmental predictor data used to develop habitat models for Natureserve’s Map of Biodiversity Importance (MoBI) and (b) the type of habitat models used to map likely habitat for each of the 2,216 imperiled plant and animal species included in the project. <br>Additional details on model development for each species is here: https://figshare.com/articles/journal_contribution/Metadata_Files_for_Species_Habitat_Models_used_in_the_Map_of_Biodiversity_Importance/13138676<br>GIS analysis of these models, combined with a map of protected areas (the USGS Protected Area Database version 2.0), showed the areas of the conterminous 48 US states with the highest numbers of overlapping unprotected, range restricted species. The MoBI output maps can be downloaded at the ArcGIS Living Atlas of the World (https://livingatlas.arcgis.com/).
DOI: 10.6084/m9.figshare.14687625.v1
title: Supporting Tables: Species Habitat Models Used in the Map of Biodiversity Importance

description: This dataset provides summary tables describing (a) environmental predictor data used to develop habitat models for Natureserve’s Map of Biodiversity Importance (MoBI) and (b) the type of habitat models used to map likely habitat for each of the 2,216 imperiled plant and animal species included in the project. <br>Additional details on model development for each species is here: https://figshare.com/articles/journal_contribution/Metadata_Files_for_Species_Habitat_Models_used_in_the_Map_of_Biodiversity_Importance/13138676<br>GIS analysis of these models, combined with a map of protected areas (the USGS Protected Area Database version 2.0), showed the areas of the conterminous 48 US states with the highest numbers of overlapping unprotected, range restricted species. The MoBI output maps can be downloaded at the ArcGIS Living Atlas of the World (https://livingatlas.arcgis.com/).
DOI: 10.5281/zenodo.5160659
title: The Ubiquitous Creeping Segments on Oceanic Transform Faults (supplementary)

description: The supplementary material to <em><strong>The ubiquitous creeping segments on oceanic transform faults, Pengcheng Shi, Meng (Matt) Wei, Robert A. Pockalny, 2021</strong></em>. Link to GitHub.
DOI: 10.5281/zenodo.4646438
title: The Ubiquitous Creeping Segments on Oceanic Transform Faults (supplementary)

description: The supplementary material to <em><strong>The ubiquitous creeping segments on oceanic transform faults, Pengcheng Shi, Meng (Matt) Wei, Robert A. Pockalny, 2021</strong></em>. Link to GitHub.