cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25255883.v1
title: Additional file 1 of A smartphone-based crowd-sourced real-time surveillance platform (apple snail inspector) for the invasive snails: a design and development study

description: Additional file 1: Dataset S1. Reported results of confirmed apple snails breeding places in 2020 and 2021.
DOI: 10.6084/m9.figshare.25264277
title: Additional file 1 of Giant pandas in captivity undergo short-term adaptation in nerve-related pathways

description: Additional file 1: Table S1. Summary of downloaded sample information used in this study.
DOI: 10.6084/m9.figshare.25264277.v1
title: Additional file 1 of Giant pandas in captivity undergo short-term adaptation in nerve-related pathways

description: Additional file 1: Table S1. Summary of downloaded sample information used in this study.
DOI: 10.6084/m9.figshare.25264411
title: Additional file 2 of Giant pandas in captivity undergo short-term adaptation in nerve-related pathways

description: Additional file 2: Table S2. Summary of the mapping information.
DOI: 10.6084/m9.figshare.25264411.v1
title: Additional file 2 of Giant pandas in captivity undergo short-term adaptation in nerve-related pathways

description: Additional file 2: Table S2. Summary of the mapping information.
DOI: 10.6084/m9.figshare.26683489
title: Additional file 3 of Giant pandas in captivity undergo short-term adaptation in nerve-related pathways

description: Additional file 3: Table S3. Summary of genomic selected regions in 40 Kb bins with 20 Kb step between Captive and Wild born giant pandas.
DOI: 10.6084/m9.figshare.26683489.v1
title: Additional file 3 of Giant pandas in captivity undergo short-term adaptation in nerve-related pathways

description: Additional file 3: Table S3. Summary of genomic selected regions in 40 Kb bins with 20 Kb step between Captive and Wild born giant pandas.
DOI: 10.5281/zenodo.13337007
title: Aligned Long-Read Murine Samples: Part 19

description: Accession numbers can be queried via the European Nucleotide Archive for metadata information: https://www.ebi.ac.uk/ena 

Samples analyzed via the original version of L-RAPiT: 

Nelson, T.M.; Ghosh, S.; Postler, T.S. L-RAPiT: A Cloud-Based Computing Pipeline for the Analysis of Long-Read RNA Sequencing Data. Int. J. Mol. Sci. 2022, 23, 15851. https://doi.org/10.3390/ijms232415851
DOI: 10.5281/zenodo.13337008
title: Aligned Long-Read Murine Samples: Part 19

description: Accession numbers can be queried via the European Nucleotide Archive for metadata information: https://www.ebi.ac.uk/ena 

Samples analyzed via the original version of L-RAPiT: 

Nelson, T.M.; Ghosh, S.; Postler, T.S. L-RAPiT: A Cloud-Based Computing Pipeline for the Analysis of Long-Read RNA Sequencing Data. Int. J. Mol. Sci. 2022, 23, 15851. https://doi.org/10.3390/ijms232415851
DOI: 10.6084/m9.figshare.26683519
title: Additional file 9 of A tumor suppressor protein encoded by circKEAP1 inhibits osteosarcoma cell stemness and metastasis by promoting vimentin proteasome degradation and activating anti-tumor immunity

description: Supplemental Tables 1 and 2
DOI: 10.6084/m9.figshare.26683519.v1
title: Additional file 9 of A tumor suppressor protein encoded by circKEAP1 inhibits osteosarcoma cell stemness and metastasis by promoting vimentin proteasome degradation and activating anti-tumor immunity

description: Supplemental Tables 1 and 2
DOI: 10.6084/m9.figshare.25264263
title: Additional file 1 of Evaluation of drought-tolerant varieties based on root system architecture in cotton (Gossypium hirsutum L.)

description: Additional file 1: Supplementary Fig. 1. The soil relative water content in 2021 (A) and 2022 (B) in the experimental fields. WW, well-watered; DS, drought stress. Supplementary Table 1. Effects of drought stress on above-ground and root traits of cotton in 2021. Supplementary Table 2. Effects of drought stress on above-ground and root of cotton in 2022. Supplementary Table 3. Descriptive statistics of cotton yield (kg ha-1) under well-watered and drought stress conditions in 2021. Supplementary Table 4. Descriptive statistics of cotton yield (kg ha-1) under well-watered and drought stress conditions in 2022. Supplementary Table 5. Descriptive statistics of cotton aboveground boimass (g) under well-watered and drought stress conditions in 2021. Supplementary Table 6. Descriptive statistics of cotton aboveground boimass (g) under well-watered and drought stress conditions in 2022. Supplementary Table 7. The soil bulk density and field water capacity of the 0-20 cm, 20-40 cm and 40-60 cm. Supplementary Table 8. The names and authorized numbers of the different cotton cultivars. Supplementary Table 9. Root traits obtained from WinRHIZO and RootNav.
DOI: 10.6084/m9.figshare.25264263.v1
title: Additional file 1 of Evaluation of drought-tolerant varieties based on root system architecture in cotton (Gossypium hirsutum L.)

description: Additional file 1: Supplementary Fig. 1. The soil relative water content in 2021 (A) and 2022 (B) in the experimental fields. WW, well-watered; DS, drought stress. Supplementary Table 1. Effects of drought stress on above-ground and root traits of cotton in 2021. Supplementary Table 2. Effects of drought stress on above-ground and root of cotton in 2022. Supplementary Table 3. Descriptive statistics of cotton yield (kg ha-1) under well-watered and drought stress conditions in 2021. Supplementary Table 4. Descriptive statistics of cotton yield (kg ha-1) under well-watered and drought stress conditions in 2022. Supplementary Table 5. Descriptive statistics of cotton aboveground boimass (g) under well-watered and drought stress conditions in 2021. Supplementary Table 6. Descriptive statistics of cotton aboveground boimass (g) under well-watered and drought stress conditions in 2022. Supplementary Table 7. The soil bulk density and field water capacity of the 0-20 cm, 20-40 cm and 40-60 cm. Supplementary Table 8. The names and authorized numbers of the different cotton cultivars. Supplementary Table 9. Root traits obtained from WinRHIZO and RootNav.
DOI: 10.6084/m9.figshare.25264420
title: Additional file 2 of Analysis of heterologous expression of phaCBA promotes the acetoin stress response mechanism in Bacillus subtilis using transcriptomics and metabolomics approaches

description: Additional file 2: Table S3. All the gene difference analysis results of B. subtilis 168-pMA5 under acetoin stress.
DOI: 10.6084/m9.figshare.25264420.v1
title: Additional file 2 of Analysis of heterologous expression of phaCBA promotes the acetoin stress response mechanism in Bacillus subtilis using transcriptomics and metabolomics approaches

description: Additional file 2: Table S3. All the gene difference analysis results of B. subtilis 168-pMA5 under acetoin stress.
DOI: 10.6084/m9.figshare.26683561
title: Additional file 3 of Analysis of heterologous expression of phaCBA promotes the acetoin stress response mechanism in Bacillus subtilis using transcriptomics and metabolomics approaches

description: Additional file 3: Table S4. All the gene difference analysis results of B. subtilis 168-pMA5 and B. subtilis 168-phaCBA under acetoin stress.
DOI: 10.6084/m9.figshare.26683561.v1
title: Additional file 3 of Analysis of heterologous expression of phaCBA promotes the acetoin stress response mechanism in Bacillus subtilis using transcriptomics and metabolomics approaches

description: Additional file 3: Table S4. All the gene difference analysis results of B. subtilis 168-pMA5 and B. subtilis 168-phaCBA under acetoin stress.
DOI: 10.6084/m9.figshare.25264244
title: Additional file 1 of Long noncoding RNA TMPO-AS1 accelerates glycolysis by regulating the miR-1270/PKM2 axis in colorectal cancer

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.25264244.v1
title: Additional file 1 of Long noncoding RNA TMPO-AS1 accelerates glycolysis by regulating the miR-1270/PKM2 axis in colorectal cancer

description: Supplementary material 1.
DOI: 10.15468/dl.7d269k
title: Occurrence Download

description: A dataset containing 114144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Pericrocotus cinnamomeus (Linnaeus, 1766)",
 "Year 2000-2024"
 ]
}

 The dataset includes 114144 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072830-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f74bjk
title: Occurrence Download

description: A dataset containing 391 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Epidendrum ×elongatum Jacq."
 ]
}

 The dataset includes 391 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072832-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25264206
title: Additional file 1 of Autophagy Proteins and clinical data reveal the prognosis of polycystic ovary syndrome

description: Additional file 1. Results of the Differentially Expressed Protein (DEP) analysis.
DOI: 10.6084/m9.figshare.25264206.v1
title: Additional file 1 of Autophagy Proteins and clinical data reveal the prognosis of polycystic ovary syndrome

description: Additional file 1. Results of the Differentially Expressed Protein (DEP) analysis.
DOI: 10.6084/m9.figshare.25264427
title: Additional file 2 of Autophagy Proteins and clinical data reveal the prognosis of polycystic ovary syndrome

description: Additional file 2. The functional Enrichment Analysis of DEPs.
DOI: 10.6084/m9.figshare.25264427.v1
title: Additional file 2 of Autophagy Proteins and clinical data reveal the prognosis of polycystic ovary syndrome

description: Additional file 2. The functional Enrichment Analysis of DEPs.
DOI: 10.6084/m9.figshare.26683624
title: Additional file 3 of Autophagy Proteins and clinical data reveal the prognosis of polycystic ovary syndrome

description: Additional file 3.
DOI: 10.6084/m9.figshare.26683624.v1
title: Additional file 3 of Autophagy Proteins and clinical data reveal the prognosis of polycystic ovary syndrome

description: Additional file 3.
DOI: 10.6084/m9.figshare.25264430.v1
title: Additional file 2 of Regulation of β-cell death by ADP-ribosylhydrolase ARH3 via lipid signaling in insulitis

description: Additional file 2: Table S1. Characteristics of human islet donors. Table S2. Data collection parameters. Table S3. List of antibodies and oligonucleotides used in the study. Table S4. Quantitative proteomics analysis of islets from NOD and NOR mice at 6 weeks of age. Table S5. Differentially abundant proteins found in the quantitative proteomics analysis of islets from NOD and NOR mice at 6 weeks of age. Table S6. Quantitative lipidomics analysis in the negative-ionization mode of the EndoC-βH1 cells (n = 4) treated with 50 U/mL IL-1β + 1000 U/mL IFN-γ for 48 h. Table S7. Quantitative lipidomics analysis in the positive-ionization mode of the EndoC-βH1 cells (n = 4) treated with 50 U/mL IL-1β + 1000 U/mL IFN-γ for 48 h. Table S8. Quantitative lipidomics analysis in the negative-ionization mode of the human islets (n = 10) treated with 50 U/mL IL-1β + 1000 U/mL IFN-γ for 24 h. Table S9. Quantitative lipidomics analysis in the positive-ionization mode of the human islets (n = 10) treated with 50 U/mL IL-1β + 1000 U/mL IFN-γ for 24 h. Table S10. Quantitative lipidomics analysis in the negative-ionization mode of islets from 6-weeks old NOD vs. NOR mice. Table S11. Quantitative lipidomics analysis in the positive-ionization mode of islets from 6-weeks old NOD vs. NOR mice. Table S12. Quantitative proteomics analysis of wild-type and Pla2g6 knockdown MIN6 beta cells treated with cytokines (100 ng/mL IFN-γ, 10 ng/mL TNF-α, and 5 ng/mL IL-1β) for 24 h. Table S13. Identification of proteins that the abundances are regulated by cytokines via PLA2G6. Wild-type and Pla2g6 knockdown MIN6 beta cells treated with cytokine cocktail CT2 (100 ng/mL IFN-γ, 10 ng/mL TNF-α, and 5 ng/mL IL-1β) for 24 h were analyzed by proteomics. The criteria for selecting PLA2G6-dependent cytokine-regulated proteins were: (i) significantly regulated by the cytokine treatment (untreated wild type vs. wild type treated with cytokines), (ii) this regulation also had to be significant comparing wild type treated with cytokines vs. Pla2g6 knockdown treated with cytokines, and (iii) not significantly changing in untreated Pla2g6 knockdown vs. Pla2g6 knockdown treated with cytokines.
DOI: 10.6084/m9.figshare.25264430
title: Additional file 2 of Regulation of β-cell death by ADP-ribosylhydrolase ARH3 via lipid signaling in insulitis

description: Additional file 2: Table S1. Characteristics of human islet donors. Table S2. Data collection parameters. Table S3. List of antibodies and oligonucleotides used in the study. Table S4. Quantitative proteomics analysis of islets from NOD and NOR mice at 6 weeks of age. Table S5. Differentially abundant proteins found in the quantitative proteomics analysis of islets from NOD and NOR mice at 6 weeks of age. Table S6. Quantitative lipidomics analysis in the negative-ionization mode of the EndoC-βH1 cells (n = 4) treated with 50 U/mL IL-1β + 1000 U/mL IFN-γ for 48 h. Table S7. Quantitative lipidomics analysis in the positive-ionization mode of the EndoC-βH1 cells (n = 4) treated with 50 U/mL IL-1β + 1000 U/mL IFN-γ for 48 h. Table S8. Quantitative lipidomics analysis in the negative-ionization mode of the human islets (n = 10) treated with 50 U/mL IL-1β + 1000 U/mL IFN-γ for 24 h. Table S9. Quantitative lipidomics analysis in the positive-ionization mode of the human islets (n = 10) treated with 50 U/mL IL-1β + 1000 U/mL IFN-γ for 24 h. Table S10. Quantitative lipidomics analysis in the negative-ionization mode of islets from 6-weeks old NOD vs. NOR mice. Table S11. Quantitative lipidomics analysis in the positive-ionization mode of islets from 6-weeks old NOD vs. NOR mice. Table S12. Quantitative proteomics analysis of wild-type and Pla2g6 knockdown MIN6 beta cells treated with cytokines (100 ng/mL IFN-γ, 10 ng/mL TNF-α, and 5 ng/mL IL-1β) for 24 h. Table S13. Identification of proteins that the abundances are regulated by cytokines via PLA2G6. Wild-type and Pla2g6 knockdown MIN6 beta cells treated with cytokine cocktail CT2 (100 ng/mL IFN-γ, 10 ng/mL TNF-α, and 5 ng/mL IL-1β) for 24 h were analyzed by proteomics. The criteria for selecting PLA2G6-dependent cytokine-regulated proteins were: (i) significantly regulated by the cytokine treatment (untreated wild type vs. wild type treated with cytokines), (ii) this regulation also had to be significant comparing wild type treated with cytokines vs. Pla2g6 knockdown treated with cytokines, and (iii) not significantly changing in untreated Pla2g6 knockdown vs. Pla2g6 knockdown treated with cytokines.
DOI: 10.6084/m9.figshare.25264251
title: Additional file 1 of Integrated transcriptome and DNA methylome analysis reveal the biological base of increased resistance to gray leaf spot and growth inhibition in interspecific grafted tomato scions

description: Additional file 1. Tables S1-S11
DOI: 10.6084/m9.figshare.25264251.v1
title: Additional file 1 of Integrated transcriptome and DNA methylome analysis reveal the biological base of increased resistance to gray leaf spot and growth inhibition in interspecific grafted tomato scions

description: Additional file 1. Tables S1-S11
DOI: 10.6084/m9.figshare.25264435
title: Additional file 2 of LATS1/2 loss promote tumor immune evasion in endometrial cancer through downregulating MHC-I expression

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.25264435.v1
title: Additional file 2 of LATS1/2 loss promote tumor immune evasion in endometrial cancer through downregulating MHC-I expression

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.25264352
title: Additional file 1 of Spatiotemporal heterogeneity and long-term impact of meteorological, environmental, and socio-economic factors on scrub typhus in China from 2006 to 2018

description: Additional file 1.
DOI: 10.6084/m9.figshare.25264352.v1
title: Additional file 1 of Spatiotemporal heterogeneity and long-term impact of meteorological, environmental, and socio-economic factors on scrub typhus in China from 2006 to 2018

description: Additional file 1.
DOI: 10.15468/dl.w4jbm6
title: Occurrence Download

description: A dataset containing 613 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guyana",
 "DatasetKey is EOD – eBird Observation Dataset",
 "IucnRedListCategory is CR",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 613 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069644-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5623jw
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Agama africana (Hallowell, 1844), Amaea africana Bouchet & Tillier, 1978, Amara africana Putzeys, 1872, Amata africana (Hampson, 1914))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 73 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034774-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8sk9z
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Excorallana delaneyi Stone & Heard, 1989"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119385-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjjrw3
title: Occurrence Download

description: A dataset containing 40438 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Rumex longifolius DC."
 ]
}

 The dataset includes 40438 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034758-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcgqh4
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orthoconchoecia secernenda (Vavra, 1906)"
 ]
}

 The dataset includes 46 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127102-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.67c55a
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Agama cristata Mocquard, 1905, Agama cristata Merrem, 1820, Agama cristatella Kuhl, 1820, Apamea cristata Grote, 1878)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034797-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9zx6t
title: Occurrence Download

description: A dataset containing 256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-88.3377954000000045 41.7380035999999990, -88.3377954000000045 41.7392019999999988, -88.3377954000000045 41.7409596399999998, -88.3377954000000045 41.7423977199999996, -88.3377954000000045 41.7433564299999986, -88.3377954000000045 41.7446347200000005, -88.3377954000000045 41.7459928999999974, -88.3355561799999975 41.7459928999999974, -88.3337167499999936 41.7459928999999974, -88.3317173700000069 41.7459928999999974, -88.3300378999999936 41.7459928999999974, -88.3280385999999993 41.7459928999999974, -88.3280385999999993 41.7447945099999984, -88.3280385999999993 41.7427971799999966, -88.3280385999999993 41.7415188900000018, -88.3280385999999993 41.7404003899999978, -88.3280385999999993 41.7393617800000030, -88.3280385999999993 41.7380035999999990, -88.3294780699999933 41.7380035999999990, -88.3314774499999942 41.7380035999999990, -88.3326770700000026 41.7380035999999990, -88.3341166299999969 41.7380035999999990, -88.3361959799999994 41.7380035999999990, -88.3377954000000045 41.7380035999999990))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 256 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102249-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvsptg
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhadinaea quinquelineata Cope, 1886)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034776-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9d3xms
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-81.6664674000000019 38.3728371999999993, -81.6664674000000019 38.3736146899999966, -81.6664674000000019 38.3746081500000003, -81.6664674000000019 38.3754288399999979, -81.6664674000000019 38.3764655000000019, -81.6664674000000019 38.3771565999999993, -81.6656063199999949 38.3771565999999993, -81.6648314899999974 38.3771565999999993, -81.6641857900000048 38.3771565999999993, -81.6633248600000030 38.3771565999999993, -81.6625500300000056 38.3771565999999993, -81.6617751900000002 38.3771565999999993, -81.6610862999999938 38.3771565999999993, -81.6610862999999938 38.3764655000000019, -81.6610862999999938 38.3756879999999967, -81.6610862999999938 38.3749968999999993, -81.6610862999999938 38.3744785700000008, -81.6610862999999938 38.3738738600000033, -81.6610862999999938 38.3728371999999993, -81.6621195599999936 38.3728371999999993, -81.6633248600000030 38.3728371999999993, -81.6639275099999935 38.3728371999999993, -81.6652619500000014 38.3728371999999993, -81.6664674000000019 38.3728371999999993))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102257-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.