cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sg8vmj
title: Occurrence Download

description: A dataset containing 447187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-73.96521 41.92191,-69.40732 41.92191,-69.40732 45.94933,-73.96521 45.94933,-73.96521 41.92191))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2014-2024"
 ]
}

 The dataset includes 447187 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033773-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628115_d5
title: Additional file 8: of 
                     De novo assembly and characterisation of the field pea transcriptome using RNA-Seq

description: ORF prediction of the unannotated contigs. (A) This file contains information on ORFs prediction for the unannotated Kaspa-derived contigs. (B) This file contains information on ORFs prediction for the unannotated Parafield-derived contigs. (ZIP 7244Â kb)
DOI: 10.6084/m9.figshare.c.3628115_d6
title: Additional file 7: of 
                     De novo assembly and characterisation of the field pea transcriptome using RNA-Seq

description: (A). Bioinformatic comparison (BLASTN) of Kaspa contigs against the pea transcriptome datasets. The information includes the BLASTN results obtained as a result of comparison of Kaspa contigs against four other transcriptome datasets of pea at a threshold E value
DOI: 10.6084/m9.figshare.c.3628115_d7
title: Additional file 4: of 
                     De novo assembly and characterisation of the field pea transcriptome using RNA-Seq

description: Bioinformatic annotation (BLASTN) of Kaspa and Parafield contigs against the nt database and the pea chloroplast genome. The information includes the BLASTN results obtained as a result of comparison of Kaspa and Parafield contigs against the nt database and the pea chloroplast genome at a threshold E value
DOI: 10.6084/m9.figshare.c.3628115_d8
title: Additional file 10: of 
                     De novo assembly and characterisation of the field pea transcriptome using RNA-Seq

description: Annotation of tissue-specific contigs. This file contains information on the annotation of some of the tissue-specific contigs. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3628163_d1
title: Additional file 1: of Pretreatment predictors of adjuvant chemoradiation in patients receiving transoral robotic surgery for squamous cell carcinoma of the oropharynx: a case control study

description: Database of TORS patients used for analysis. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3628115_d9
title: Additional file 6: of 
                     De novo assembly and characterisation of the field pea transcriptome using RNA-Seq

description: Pathway assignment based on KEGG. This file summarises the properties of Kaspa and Parafield contigs annotated to the reference pathways in KEGG database, and the contigs with KO annotations. (XLSX 915Â kb)
DOI: 10.6084/m9.figshare.c.3628115_d10
title: Additional file 1: of 
                     De novo assembly and characterisation of the field pea transcriptome using RNA-Seq

description: Summary of sequencing outputs. This file contains a summary of the sequencing outcomes for each tissue-specific library of both varieties, Kaspa and Parafield (total number of raw reads from both sequencing platforms, number of reads used for assembly). (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3628178_d7
title: Additional file 6: of Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations

description: Contains the full results of the integration with enhancers described by H3K27ac or H3K4me marks. (XLSX 276 kb)
DOI: 10.6084/m9.figshare.c.3628202_d3
title: Additional file 3: of Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi: Ascomycota) from Protea trees in South Africa

description: Table S3. Sequenced Sordariomycete fungi used as evidence for genome annotations. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3628220_d1
title: Additional file 1: of Enzymatic debridement for the treatment of severely burned upper extremities â   early single center experiences

description: Raw data. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3628178_d8
title: Additional file 2: of Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations

description: Contains the list of all SNPs tested in the eQTL mapping. (TXT 67993 kb)
DOI: 10.6084/m9.figshare.c.3628178_d9
title: Additional file 12: Figure S8. of Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations

description: Network connectivity and neighborhoods of genes identified through overlap with enhancers and active genes in primary B cell, T cell, and monocyte datasets. A Network connectivity parameters compared for GWAS-associated genes identified in this study compared to those annotated by NCBI phenotype-genotype integrator. B Enrichment of interactome subnetwork genes in cell types and canonical pathways. C Subnetwork of genes that were found to be unique to T cells. D Enrichment of T cell specific interactome subnetwork genes in cell types and canonical pathways [2, 28]. (ZIP 7.33 mb)
DOI: 10.6084/m9.figshare.c.3628238_d1
title: Additional file 2 of Enhanceosome transcription factors preferentially dimerize with high mobility group proteins

description: Selected dimer predictions in human and mouse enhanceosome. The table contains information on the correct dimer structure that fits the literature data on the enhanceosome. It also contains various details of the predictions, including structure of the dimer, name of the cell type, p-value of the prediction, and number of instances in open chromatin part of the genome. (XLS 87.5 kb)
DOI: 10.6084/m9.figshare.c.3628256_d4
title: MOESM2 of Time series analysis of malaria in Afghanistan: using ARIMA models to predict future trends in incidence

description: Additional file 5. Area-Averaged of Relative Humidity at Surface (Daytime/Ascending) ().
DOI: 10.6084/m9.figshare.c.3628256_d5
title: MOESM5 of Time series analysis of malaria in Afghanistan: using ARIMA models to predict future trends in incidence

description: Additional file 2. Area-Averaged of CMG 0.05 Deg Monthly EVI monthly 0.05 ().
DOI: 10.6084/m9.figshare.c.3628250_d8
title: Additional file 12: of Flowering time adaption in Swedish landrace pea (Pisum sativum L.)

description: P-values of Unpaired t-test for gene expression levels between pairs of accessions. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.c.3628256_d6
title: MOESM1 of Time series analysis of malaria in Afghanistan: using ARIMA models to predict future trends in incidence

description: Additional file 1. Malaria Metadata.
DOI: 10.6084/m9.figshare.c.3628259_d3
title: Additional file 3: Table S2. of Sex-linked markers in the North American green frog (Rana clamitans) developed using DArTseq provide early insight into sex chromosome evolution

description: BLAST results for sex-linked markers including locus name, allele, homology, and e-value. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3628271_d2
title: MOESM1 of Potential drugâ  drug interactions among elderly patients admitted to medical ward of Ayder Referral Hospital, Northern Ethiopia: a cross sectional study

description: Additional file 1. Dataset.
DOI: 10.6084/m9.figshare.c.3628250_d10
title: Additional file 1: of Flowering time adaption in Swedish landrace pea (Pisum sativum L.)

description: Accessions used in the study, their origin and data on flowering and seed production. (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.c.3628250_d11
title: Additional file 3: of Flowering time adaption in Swedish landrace pea (Pisum sativum L.)

description: GLM models analysed, their significance and the data sets used. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.c.3628283_d2
title: Additional file 1: of Recombinant domains III of Tick-Borne Encephalitis Virus envelope protein in combination with dextran and CpGs induce immune response and partial protectiveness against TBE virus infection in mice

description: Fasta contains a multiple alignment of E protein domain III of TBEV. (FASTA 75Â kb)
DOI: 10.6084/m9.figshare.c.3628307_d3
title: Additional file 3 of Data integration to prioritize drugs using genomics and curated data

description: A spreadsheet file containing the cancer-essentiality results for genes and processes. (XLS 10752 kb)
DOI: 10.6084/m9.figshare.c.3628322_d1
title: Additional file 3: of Characterization of the cytolethal distending toxin (typhoid toxin) in non-typhoidal Salmonella serovars

description: Salmonella genomes and sequences used for cdtB, pltA, and pltB analyses. Table in a Microsoft excel file listing the accession numbers of the genomes used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.c.3628298_d7
title: Additional file 4: of Rab32 and Rab38 genes in chordate pigmentation: an evolutionary perspective

description: Database of sequences used in phylogeny of Additional file 3 . (TXT 5 kb)
DOI: 10.6084/m9.figshare.c.3628316_d2
title: Additional file 3: of Militarization, human rights violations and community responses as determinants of health in southeastern Myanmar: results of a cluster survey

description: Negotiation as a modifier of associations between exposure to armed groups and risk of poor health. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3628307_d4
title: Additional file 4 of Data integration to prioritize drugs using genomics and curated data

description: A spreadsheet file containing the drug prioritization results. (XLS 275 kb)
DOI: 10.6084/m9.figshare.c.3628316_d3
title: Additional file 1: of Militarization, human rights violations and community responses as determinants of health in southeastern Myanmar: results of a cluster survey

description: Associations between health in households that did not experience human rights violations and human rights violations in neighborsâ   households. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3628316_d4
title: Additional file 2: of Militarization, human rights violations and community responses as determinants of health in southeastern Myanmar: results of a cluster survey

description: Associations between village self-protection activities and risks of human rights violations and poor health. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3628298_d10
title: Additional file 1: of Rab32 and Rab38 genes in chordate pigmentation: an evolutionary perspective

description: Accession number of sequences used in the evolutionary analysis. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3628328_d1
title: Additional file 8: Table S5. of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: Effect of the CD-HIT-EST aS value on clustering. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3628328_d2
title: Additional file 3: of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: Perl script used to perform our assembly pipeline. (PL 43Â kb)
DOI: 10.6084/m9.figshare.c.3628328_d8
title: Additional file 2: of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: Parameter file for reads design with Flux simulator on D. melanogaster. (TXT 651 bytes)
DOI: 10.6084/m9.figshare.c.3628379_d1
title: Additional file 2: of A functional genomics screen identifies an Importin-Îą homolog as a regulator of stem cell function and tissue patterning during planarian regeneration

description: Lists 1) all differentially expressed genes by gene ID with Blast2Go and KOG annotation for each gene; 2) normalized average expression levels for each gene tested in each sample type; 3) adjusted p -values for each comparison performed with differentially expressed genes highlighted in red. Where a significant change was observed, the â  expression changeâ   column provides a description of the direction of the change (up or down) and in which tissue type(s) (blastema or opposite side) the change was detected. (XLSX 1831 kb)
DOI: 10.6084/m9.figshare.c.3628328_d9
title: Additional file 4: of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: Perl script used to randomly select candidates from a list of transcripts for our PCR validation experiments. (PL 10Â kb)
DOI: 10.6084/m9.figshare.c.3628379_d2
title: Additional file 4: of A functional genomics screen identifies an Importin-α homolog as a regulator of stem cell function and tissue patterning during planarian regeneration

description: Lists all genes for which RNAi experiments were performed, with identifiers for the 5′- and 3′-end sequence reads or primer sequences for each clone used. The genes for which knockdown produced a phenotype are marked with the names they are referred to by in Table 1. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3628391_d1
title: MOESM2 of Prevalence and risk factors for overweight horses at premises in Sweden assessed using official animal welfare control data

description: Additional file 2: Table S2. Inspection characteristics associated with overweight horses.
DOI: 10.6084/m9.figshare.c.3628379_d3
title: Additional file 1: of A functional genomics screen identifies an Importin-Îą homolog as a regulator of stem cell function and tissue patterning during planarian regeneration

description: Identifies the ESTs matched to each Gene ID and provides their sequence. (XLSX 4469 kb)
DOI: 10.6084/m9.figshare.c.3628403_d1
title: MOESM1 of 
                     l-Methionine repressible promoters for tuneable gene expression in Trichoderma reesei

description: Additional file 1: Table S1. T. reesei orthologues of l-methionine biosynthesis related proteins and genomic location of the corresponding gene; Table S2. Oligonucleotides used in this study; Figure S1. Metabolic pathway of sulphate assimilation and l-methionine biosynthesis; Figure S2. Gene copy number estimation of T. reesei sucA transformants by qPCR; Figure S3. Gene copy number estimation of T. reesei lacZ transformants by qPCR; Figure S4. Phylogenetic analysis of TauD like dioxygenases.
DOI: 10.6084/m9.figshare.c.3628379_d4
title: Additional file 3: of A functional genomics screen identifies an Importin-α homolog as a regulator of stem cell function and tissue patterning during planarian regeneration

description: Provides identifiers for 5′ and 3′ EST sequence reads or primer sequences for clones used to make riboprobes. “Blastema”, “Neoblasts” and “CNS” columns indicate whether or not each gene was expressed in each of those tissues based on WISH. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3628391_d2
title: MOESM3 of Prevalence and risk factors for overweight horses at premises in Sweden assessed using official animal welfare control data

description: Additional file 3: Table S3. Resource- and management-based characteristics associated with overweight horses.
DOI: 10.6084/m9.figshare.c.3628397_d2
title: Additional file 7: of A transposable element insertion in the susceptibility gene CsaMLO8 results in hypocotyl resistance to powdery mildew in cucumber

description: Full table of 115 resequenced accessions. The amount of reads identified is given at the overlap between CsaMLO8 and the start of the insertion in forward (TE start-F) and reverse (TE start-R) direction, at the overlap between the end of the insertion and CsaMLO8 in forward (TE end-F) and reverse (TE end-R) direction, and at the site of the insertion with only CsaMLO8 sequence in forward (WT-F) and reverse (WT-R) direction. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3628406_d5
title: Additional file 3: Table S1. of Detailed phenotyping identifies genes with pleiotropic effects on body composition

description: A list of the overlapped candidate genes in QTL regions from our sheep study with genes associated with body mass index and height in human. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3628427_d1
title: Additional file 2: of Age-related association of venom gene expression and diet of predatory gastropods

description: Shell lengths of each sample and raw C values of the six conotoxin genes and the Î˛-tubulin gene. (XLS 37 kb)
DOI: 10.6084/m9.figshare.c.3628406_d7
title: Additional file 5: of Detailed phenotyping identifies genes with pleiotropic effects on body composition

description: The signed t-values of SNP effects (150,001 to 300,000 in â  chromosome: positionâ   order) for the 56 traits used in multi-trait, meta-analysis. (GZ 30615Â kb)
DOI: 10.15468/jvmzc5
title: TRADITION Project | Brazilian Zooarch Database (ZooarchBR) - Fish

description: Faunal information was obtained from research articles, academic dissertations and theses, and book chapters available as physical and electronic copies in institutional repositories (universities, museums, public libraries) and publishers’ websites. Whenever possible, taxonomic information was recorded to the species level, but for most sites only genus, and often classes, orders, and/or families were available. The nomenclature and ecological attributions follow the World Register of Marine Species (WoRMS) and Eschmeyer's Catalog of Fishes.

Coastal and ocean ecosystems have fuelled the subsistence of people for thousands of years along the Brazilian coasts. As a result, hundreds of archaeological sites preserve information on past biological diversity of potential interest for management and conservation debates. Here, we present the occurrence of bony and cartilaginous fish, the most commonly occurring and abundant faunal remains in the archaeological sites under examination. Other organisms such as molluscs, echinoderms, crustaceans, reptiles, birds and mammals will be available in other resources (separate lists) in the platform.
DOI: 10.6084/m9.figshare.c.3628454_d1
title: Additional file 7: Table S6. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: Putative cytochrome P450 monooxygenases. (XLSX 47 kb)
DOI: 10.15468/dl.mhh3ph
title: Occurrence Download

description: A dataset containing 8389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Acanthaster Gervais, 1841"
 ]
}

 The dataset includes 8389 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033778-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64upzq
title: Occurrence Download

description: A dataset containing 15443 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Antilocapra americana (Ord, 1815)",
 "Year 1850-2025"
 ]
}

 The dataset includes 15443 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000778-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bwnxn
title: Occurrence Download

description: A dataset containing 426951 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-02-05",
 "EventDate is less than or equal to 2025-03-07",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 426951 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000771-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/k89s6m
title: Catálogo de autoridad taxonómica para macroalgas, fanerógamas marinas y mangles del Pacífico Mexicano/Golfo de California

description: El Catalogo de Autoridad Taxonómica de macroalgas, fanerógamas marinos y mangles que se distribuyen en la costa del Pacífico Mexicano y el Golfo de California representa un esfuerzo de caracterización de la flora marina que abarca una amplia gama de ecosistemas y representa un esfuerzo no realizado con anterioridad en la región. El presente proyecto se propone determinar la lista de especies reconocidas para la región recopilando sus potenciales problemas taxonómicos. Adicionalmente se va a determinar el patrón y si se presenta el límite sur o norte de alguna de las especies en la región. Un producto adicional será la evaluación de la afinidad entre regiones y delimitar su extensión. A partir de la evaluación de la literatura y de los registros de diferentes Herbarios se desarrollara un Catalogo de Especies, que será capturado como parte de Una base de datos en Biotica, las referencias relativas de la zona serán capturadas en una base de datos en Endnote, con el programa Arcgis ser desarrollaran mapas de distribución de las especies y se desarrollara un catalogo fotográfico de las principales especies de la zona. Se parte del principio que al menos existen 745 registros de nombres específicos para la región de donde se establecerán cuales son las especies nativas, endémicas e introducidas o exóticas. Se establecerán comparaciones geográficas para poder determinar los límites geográficos del Pacífico Mexicano. Este compendio representa el primer catalogo de especies para la costa Pacífico de México y representa un instrumento para el apropiado manejo de la zona marina del paísReino: 2
Filo: 2
Clase: 2
Orden: 14
Familia: 36
Género: 88
Especie: 287
Epitetoinfraespecifico: 31
DOI: 10.15468/dl.byzeut
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Typhlias pearsei Hubbs, 1938"
 ]
}

 The dataset includes 58 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000780-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ef7cvg
title: Occurrence Download

description: A dataset containing 1386 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cuniculus paca (Linnaeus, 1766)"
 ]
}

 The dataset includes 1386 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000781-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.