cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25550/tp2
title: microCT - Soft Tissue of a Tgfbr2fl/fl Control mouse at E13.5

description: Mouse ID: AS334 This dataset includes microCT scans of the skull of a Tgfbr2fl/fl Control mouse at E13.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v5e
title: microCT - Soft Tissue of C57BL6J at E16.5

description: This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v6a
title: microCT - Soft Tissue of a K14-Cre; Fgfr2fl/fl mouse at E16.5

description: Mouse ID: ZZ343 This dataset includes microCT scans of the skull of a K14-Cre; Fgfr2fl/flmouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vnr
title: microCT - Soft Tissue of Msx1 Control Mouse at E14.5

description: Mouse ID: GL224 This dataset includes 1 microCT scan of the skull of an Msx1 mouse at E14.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vw4
title: microCT - Bone Tissue of Ctgf Control Mouse at P0

description: Mouse ID: CP052 This dataset includes microCT scans of the skull of a Ctgf Control Mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.17632/z3byd8jyfn.1
title: Data for: Methodology of Köppen-Geiger-Photovoltaic climate classification and implications to Worldwide Mapping of PV System Performance
DOI: 10.25345/c5k95s
title: MassIVE MSV000084330 - Formation of N-GlcNAc proteins is upregulated upon inhibition of proteasome activity in Ngly1-KO cells
title: Raw files from LWAC-based glycopeptide enrichment and ubiquitin enrichment from MEF wild type, Ngly1-KO, Engase-KO, and Ngly1/Engase-KO cells.
DOI: 10.25550/tyj
title: microCT - Soft Tissue of a Wnt1-Cre;Tgfbr2fl/fl;Alk5fl/+ mouse at E13.5

description: Mouse ID: AS335 This dataset includes microCT scans of the skull of a Wnt1-Cre;Tgfbr2fl/fl;Alk5fl/+ mouse at E13.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v4w
title: microCT - Bone Tissue of a Wnt1-Cre; Tgfbr2fl/fl; Alk5fl/+ mouse at E17.5

description: Mouse ID: AS342 This dataset includes microCT scans of the skull of a Wnt1-Cre; Tgfbr2fl/fl; Alk5fl/+ mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v9r
title: What miRNAs are expressed in the E14.5 mouse midfacial tissue?

description: Researching what miRNAs are expressed in the E14.5 mouse midfacial tissue. Methods: * 1 dissected maxillas (4 mg w/w per maxilla; 4.0 ug of purified miRNA) * 6 dissected palatal shelves (1.5-2 mg w/w per palatal shelves; 3.5 ug of purified miRNA) * miRNA extracted using the Norgen miRNA Purification Kit, miRNA libraries prepared by ligation of barcoded adapters on 5' ends of small-RNA sequences, adapter was ligated to the 3' ends * miRNA-seq Illumina HiSeq
DOI: 10.25550/vaj
title: microCT - Bone Tissue of a Wnt1-Cre; Tgfbr2fl/fl; Alk5fl/+ mouse at E17.5

description: Mouse ID: AS341 This dataset includes microCT scans of the skull of a Wnt1-Cre; Tgfbr2fl/fl; Alk5fl/+ mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vbc
title: microCT - Soft Tissue of Wnt1-Cre Tgfbr2flfl mouse at E15.5

description: Mouse ID: JI317 This dataset includes microCT scans of the skull of a Wnt1-Cre Tgfbr2flfl mouse at E15.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vs0
title: microCT - Soft Tissue of Msx1-- mouse at E16.5

description: Mouse ID: CP261 This dataset includes microCT scans of the skulls of Msx1-- mouse at E16.5. The scans are in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.5281/zenodo.3441609
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Monckton, Spencer, https://orcid.org/0000-0002-9879-9118. Claims were made on Bloodhound, https://bloodhound-tracker.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.25550/ttj
title: microCT - Soft Tissue of Wnt1-Cre; Tgrbr2flfl mouse at E18.5

description: Mouse ID: JI251 This dataset includes 1 microCT scan of the skull of a Wnt1-Cre; Tgfbr2flfl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v2c
title: microCT - Bone Tissue of a K14-Cre; Fgfr2fl/fl mouse at E16.5

description: Mouse ID: ZZ343 This dataset includes microCT scans of the skull of a K14-Cre; Fgfr2fl/flmouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v7j
title: microCT - Bone Tissue of a Wnt1-Cre;Tgfbr2fl/fl mouse at E17.5

description: Mouse ID: AS324 This dataset includes microCT scans of the skull of a Wnt1-Cre;Tgfbr2fl/fl mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vfm
title: microCT - Bone Tissue of a Wnt1-Cre; Tgfbr2fl/fll mouse at E16.5

description: Mouse ID: AS339 This dataset includes microCT scans of the skull of a Wnt1-Cre; Tgfbr2fl/fll mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vm8
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm901

description: See link to the data preparation protocols for this study in the Additional Information section **Enhancer location:** Mouse genome mm9, chr1: 93859505-93862537 **Name:** mAN330 **Vista Enhancer ID:** mm901 **Nearest craniofacial gene or locus:** Twist2 **Enhancer expression:** positive **Tissues where active:** branchial arch **Comment on OPT files:** This data set includes the following: * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]
DOI: 10.25550/vwc
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm646

description: See link to the data preparation protocols for this study in the Additional Information section **Enhancer location:** Mouse genome mm9, chr1: 194624291-194626894 **Name:** mCF195 **Vista Enhancer ID:** mm646 **Nearest craniofacial gene or locus:** Irf6 **Enhancer expression:** positive **Tissues where active:** branchial arch, nose, facial mesenchyme, forebrain, limb, somite **Comment on OPT files:** This data set includes the following: * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]
DOI: 10.25550/vwm
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm924

description: See link to the data preparation protocols for this study in the Additional Information section **Enhancer location:** Mouse genome mm9, chr17: 44754669-44756591 **Name:** mCF205 **Vista Enhancer ID:** mm924 **Nearest craniofacial gene or locus:** Runx2 **Enhancer expression:** positive **Tissues where active:** branchial arch, facial mesenchyme **Comment on OPT files:** This data set includes the following: * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]
DOI: 10.25550/vwy
title: microCT - Bone Tissue of C57BL6J Mouse at E17.5

description: Mouse ID: JI233 This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/1-3svy
title: FB0051_6 year old male with hypertelorism (marked), dysmorphic facial features, hypotonia _Candidate Genes: PLXNA3 & NRG2

description: The purpose of this study is to collect, process, and study samples from individuals with known or possible genetic disease, and their family members. The study’s broad goals are to better understand the genetic causes of disease in order to improve the ability to diagnose, treat, and even prevent illness. Our goal is to obtain a genetic diagnosis for health problem(s) the proband has, so the information can be used, when appropriate, to guide medical decisions made by the affected individuals doctor. This is restricted-access human data. To gain access to this data, you must first go through the [process outlined here](/odocs/data-guidelines/). This case was brought to the attention of FaceBase from Dr. Joan Stoler of Boston Children's Hospital. Phenotype - Hypertelorism (marked) - Hypotonia - Wide midportion of the anterior fossa - Broad nasal root and bridge
DOI: 10.25550/1-3v7j
title: FB0015_Male with bilateral cleft lip and palate

description: The purpose of this study is to collect, process and study samples from individuals with known or possible genetic disease, and their family members. The study’s broad goals are to better understand the genetic causes of disease in order to improve the ability to diagnose, treat, and even prevent illness. Our goal is to obtain a genetic diagnosis for health problem(s) the proband has, so the information can be used, when appropriate, to guide medical decisions made by the affected individuals doctor. This is restricted-access human data. To gain access to this data, you must first go through the [process outlined here](/odocs/data-guidelines/). This case was brought to the attention of FaceBase from Dr. Eric Liao of Massachusetts General Hospital. Phenotype - Bilateral oblique facial cleft
DOI: 10.25550/1-3v8y
title: FB0041_8 yo male_Brachi-Oto-Renal (BOR) Syndrome

description: The purpose of this study is to collect, process, and study samples from individuals with known or possible genetic disease, and their family members. The study’s broad goals are to better understand the genetic causes of disease in order to improve the ability to diagnose, treat, and even prevent illness. Our goal is to obtain a genetic diagnosis for health problem(s) the proband has, so the information can be used, when appropriate, to guide medical decisions made by the affected individuals doctor. This is restricted-access human data. To gain access to this data, you must first go through the [process outlined here](/odocs/data-guidelines/). This case was brought to the attention of FaceBase from Dr. Pedro Sanchez of Children's Hospital Los Angeles. Phenotype - microtia - brachial cleft cyst - hearing loss - Micrognathia/tracheostomy - autism
DOI: 10.25550/1-3x0m
title: Lambdoid Suture, WT and Fgfr2+/S252W (Apert syndrome mouse model), E16.5 and E18.5

description: RNA-Seq libraries are from laser capture microdissections of C57BL/6J Fgfr2+/+ (W) and C57BL/6J Apert syndrome EIIA-Cre+;Fgfr2+/S252W (A) mice, at development stages TS24/E16.5 (6) and TS26/E18.5 (8), from the lambdoid suture (L), with 5 biological replicates (1-5), of the suture mesenchyme (SM) and parietal and interparietal osteogenic fronts (PA, IP). “W8L1SM”, for example, indicates WT, E18.5, lambdoid suture, replicate 1, suture mesenchyme.
DOI: 10.25550/1-50e0
title: Dent1: Childhood Caries

description: [**Link to project pages of DENT1: Childhood Caries**](http://www.facebase.org/hgai/DENT1.html) dbGaP Study Accession: [phs000095.v3.p1](https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000095.v3.p1) Principal Investigator: [Mary Marazita](https://www.dental.pitt.edu/person/mary-l-marazita), University of Pittsburgh School of Dental Medicine, Pittsburgh, PA, USA Funding Sources: U01-DE018903, Dental Caries: Whole Genome Association and Gene x Environment Studies. National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD, USA R01-DE014899, Factors contributing to oral health disparities in Appalachia. National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD, USA R03-DE021425, Statistical Modeling and Genetic Epidemiology of Dental Caries in GWAS Analysis, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD, USA R01-DE09551, Longitudinal study of fluoride, diet, caries, and fluorosis. National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD, USA R01-DE12101, Fluoride and other factors in childhood and adolescent bone development. National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD, USA This study of dental caries comes from the [University of Pittsburgh’s Center for Craniofacial and Dental Genetics](https://www.dental.pitt.edu/center-craniofacial-and-dental-genetics) and focuses on childhood caries. This study is part of the Gene Environment Association Studies initiative ([GENEVA](https://www.genome.gov/27541319/gene-environment-association-studes-geneva/)), which was developed through the trans-NIH Genes, Environment, and Health Initiative (GEI). Information on how to obtain individual level data is available on dbGaP. Genotyping and quality control details are available on dbGaP and are briefly described in Shaffer et al. [Genome-wide Association Scan for Childhood Caries Implicates Novel Genes, J Dent Res 90(12):1457-1462, 2011](https://www.ncbi.nlm.nih.gov/pubmed/?term=enome-wide+Association+Scan+for+Childhood+Caries+Implicates+Novel+Genes). Dental caries is one of the most common diseases worldwide. In the US, the prevalence in adults is approximately 90% (Beltran-Aguilar et al., 2005), and in some high-risk populations, the prevalence is even higher. Treatment of dental caries consumes significant resources each year, and untreated caries lesions can lead to pain, tooth loss, and oral infection, or other co-morbidities. Cariogenesis is affected my numerous environmental, behavioral, and genetic factors, including dietary behaviors, bacterial flora, fluoride exposure, salivary factors, tooth morphology, etc. (Hunter, 1988; Anderson, 2002). This study includes analyses stratified by fluoride exposure, to address the role of genes and gene-by-fluoride interactions in the etiology of this disease. Click [here](/hgai/DENT1.html) to access the data and results for this dataset.
DOI: 10.25550/2ac6
title: RNAseq of Wnt1cre;Alk5fl/fl mutants and controls at E10.5
DOI: 10.25550/tk6
title: Spatial and temporal analysis of gene expression during growth and fusion of the mouse facial prominences: whole prominence and ectoderm/mesenchyme

description: "These data are related to the research articles entitled *["Spatial and Temporal Analysis of Gene Expression during Growth and Fusion of the Mouse Facial Prominences"](https://doi.org/10.1371/journal.pone.0008066)* by Feng et al, 2009 and *[“Systems Biology of facial development: contributions of ectoderm and mesenchyme”](https://doi.org/10.1016/j.ydbio.2017.03.025)* by Hooper et al. Contained here is a new HTML library wherein individual gene expression profiles are presented as an indexed and clickable list of the genes, each linked to a graphical image of that gene's expression profile in the ectoderm, mesenchyme, or intact prominence, and augmented by functional annotations relevant for craniofacial biology. " Cited from: &gt; Williams, Trevor; Leach, Sonia M; Feng, Weiguo (2017), “Gene expression profiles of mouse facial development”, Mendeley Data, v1 http://dx.doi.org/10.17632/5y2hgyz5ng.1 Access the dataset from the **Supplementary Files** section below.
DOI: 10.25550/vk6
title: microMRI images of skulls of affected Myf5Cre * Smad4F/F mice at E13.5

description: microMRI images of skulls of affected Myf5Cre * Smad4F/F mice at E13.5. The dataset contains 3-D images in niftii format for each of 2 mice.
DOI: 10.34725/dvn/yral4o/azwvpt
title: SL_Computed_Indicators_Main_Data.tab

description: Data of the main indicators in STATA format
DOI: 10.34725/dvn/yral4o/fpksjw
title: SL_Computed_Indicators_Main_Data_Labels.tab

description: Variable labels/description for indicators data in the csv file.
DOI: 10.34725/dvn/yral4o/wrpn3r
title: SL_Computed_Indicators_Main_Data.tab

description: Data of the main indicators in csv format
DOI: 10.21227/k138-rk94
title: ACFR Five Roundabouts Dataset

description: The dataset consists of tracking data of over 23,000 vehicles travelling though five different roundabouts in Sydney, Australia. This data was collected by a vehicle outfitted with a ibeo.HAD Feature Fusion detection and tracking system. This system uses 6 ibeo LUX 4 beam, 25 Hz Lidar scanners to identify road users at a range of up to 200m, and has an on-board computer for classification and tracking, in real time.These tracks are sorted by origin and destination for each vehicle. Data about each detected vehicle includes: X/Y relative positioning (metres), velocity (metres/second), heading (radians), size (width/height metres), classification [bike, car, heavy vehicle, pedestrian], and classification confidence.
DOI: 10.25550/1-4agg
title: Activity of chimp neural crest enhancer near HS3ST3A1 in E11.5 transgenic mouse embryo – Tg(panTro4_chr17:42623488-42624568::LacZ).

description: Tg(panTro4_chr17:42623488-42624568::LacZ) chimp neural crest enhancer with reproducible activity in the anterior forebrain, anterior midbrain, hindbrain, and optic cup. This enhancer is weaker in the forebrain and midbrain and lacks the expression in other domains associated with the orthologous human enhancer, demonstrating human biased activity in this domain when comparing these two species.
DOI: 10.25550/1-4trm
title: Cell Proliferation Heat Map of E14.5 Wnt1-Cre;Alk5flfl mouse embryo

description: E14.5 mouse heads were stained with Ki67 and DAPI. Mouse samples were imaged using Optical Projection Tomography (OPT). Heat maps were generated from images using ImageJ and Amira. Heat maps of E14.5 samples showed proliferative cells in specific regions of the head.
DOI: 10.25550/1-4xpe
title: Activity of human neural crest enhancer near TLN2 in E11.5 transgenic mouse embryo – Tg(hg38_chr15:62625148-62626033::LacZ).

description: Tg(hg38_chr15:62625148-62626033::LacZ) human neural crest enhancer with reproducible activity in the midbrain, hindbrain, periocular mesenchyme, proximal maxillary prominence and mandibular prominence of the 1st branchial arch, 2nd branchial arch, and medial limb buds.
DOI: 10.25550/26wr
title: Cell Proliferation Heat Map of E14.5 Maxilla

description: Samples from E14.5 mice were collected and embedded in paraffin. Samples were sectioned through a coronal view at 7uM. Heat maps were generated from TIFF images using Amira 6.0. E14.5 heat maps showed cellular proliferation in the mandibular and maxillary regions.
DOI: 10.25550/26zg
title: Transgenic mouse enhancer assay - mm1089

description: We used ChIP-seq to identify non-coding regulatory elements (enhancers) active during craniofacial development. This assay is Tg(mm9_chr4:154160848-154162811::LacZ). Follow this [link](https://enhancer.lbl.gov/cgi-bin/imagedb3.pl?form=presentation&show=1&experiment_id=1089&organism_id=2) to see the associated data in the VISTA browser.
DOI: 10.25550/va6
title: MicroCT imaging of col2a1a(dmh27)/+ mutant adult zebrafish

description: MicroCT imaging of col2a1a(dmh27)/+ mutant adualt zebrafish
DOI: 10.25550/vnj
title: Wnt GFP Twist 1BF Pax2 DAPI HCR Left Stiched

description: HCR images of a mouse at E9.5 - Left Stitched
DOI: 10.25550/vqc
title: Alk5 Control -- P0 Bone and Soft Tissue microCT images

description: Alk5 Control -- P0 Bone and Soft Tissue microCT images
DOI: 10.25550/1-3sqj
title: Activity of chimp neural crest enhancer near FAM222A in E11.5 transgenic mouse embryo - Tg(panTro4_chr12:110112991-110113747::LacZ).

description: Tg(panTro4_chr12:110112991-110113747::LacZ) chimp neural crest enhancer with reproducible activity in the midbrain, optic cup, facial (VII)/vestibulocochlear (VIII) nerves, and floor plate of the neural tube. This enhancer lacks many of the expression domains associated with the orthologous human enhancer, demonstrating human biased activity when comparing these two species.
DOI: 10.25550/1-3vbe
title: FB0124_Trio Saliva_5 mo male with Hallermann Strieff syndrome

description: The purpose of this study is to collect, process, and study samples from individuals with known or possible genetic disease, and their family members. The study’s broad goals are to better understand the genetic causes of disease in order to improve the ability to diagnose, treat, and even prevent illness. Our goal is to obtain a genetic diagnosis for health problem(s) the proband has, so the information can be used, when appropriate, to guide medical decisions made by the affected individuals doctor. This is restricted-access human data. To gain access to this data, you must first go through the [process outlined here](/odocs/data-guidelines/). This case was brought to the attention of FaceBase from Dr. Joan Stoler of Boston Children's Hospital. Phenotype: - 5 mo boy - Mandibular hypoplasia with glossoptosis, - Cataracts - Small ear canals - Hallermann Strieff syndrome
DOI: 10.25550/1-4tkc
title: Whole-genome transcriptome profiling of E12.5 Wnt1-Cre;Tgfbr2flfl by microarray of maxilla and mandible

description: We performed the global gene expression profiling analysis of the proximal (P ) and distal (D) regions of the mandible and proximal (P ) and distal (D) regions of the maxilla using microarray. Total RNA samples (1 ug per sample) were converted into biotin-labeled cRNA using the GeneChip® IVT Labeling Kit and standard protocols recommended by Affymetrix (Santa Clara, CA). Fragmented cRNA was applied to GeneChip, Mouse Genome 430 2.0 Arrays (Affymetrix) that contain probe sets designed to detect over 39,000 transcripts. Microarrays were hybridized, processed and scanned, as previously described using manufacturers recommended conditions.