cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3551661.v1
title: Appendix A. Model formulation.

description: Model formulation.
DOI: 10.6084/m9.figshare.3551658
title: Appendix B. A description of the data collection.

description: A description of the data collection.
DOI: 10.6084/m9.figshare.3551655
title: Appendix C. Assessing model fit.

description: Assessing model fit.
DOI: 10.6084/m9.figshare.3551658.v1
title: Appendix B. A description of the data collection.

description: A description of the data collection.
DOI: 10.6084/m9.figshare.3551655.v1
title: Appendix C. Assessing model fit.

description: Assessing model fit.
DOI: 10.6084/m9.figshare.3551652
title: Appendix D. Additional analyses including alternate fit metrics, local community predictions, informative prior predictions, regression models, trait vector similarity, cross validation, etc.

description: Additional analyses including alternate fit metrics, local community predictions, informative prior predictions, regression models, trait vector similarity, cross validation, etc.
DOI: 10.6084/m9.figshare.3551652.v1
title: Appendix D. Additional analyses including alternate fit metrics, local community predictions, informative prior predictions, regression models, trait vector similarity, cross validation, etc.

description: Additional analyses including alternate fit metrics, local community predictions, informative prior predictions, regression models, trait vector similarity, cross validation, etc.
DOI: 10.6084/m9.figshare.3551649
title: Supplement 1. R code and fynbos data set.

description: File List Merow_et_al_R_code.r -- R code for all analyses fynbos_abundance_matrix.csv -- matrix of relative abundance (rows) by sites (columns) fynbos_trait_matrix.csv -- matrix of species (rows) by traits (columns) Description The file Merow_et_al_R_code.r contains R code for constructing the EM models shown in the main text. This includes the basic EM model, calculating the Hellinger fit metric, Lagrange multipliers and plotting results for both local and regional communities. We also include code for predicting community-aggregated traits from splines, cross validation, generating informative priors and permutation tests. The file fynbos_abundance_matrix.csv contains site by site relative abundance data for the eight elevational communities we used (derived from 43 5 × 10 m releves) from the Baviaanskloof Mountains, South Africa. The file fynbos_trait_matrix.csv contains data for each species on the following traits: graminoid (binary), succulent (binary), maximum height, leaf longevity (ordinal 1–3, 1 is lowest), flowering duration, pubescence (binary), leaf width, leaf perimeter^2/leaf area, leaf area/basal diameter, stem length/stem basal diameter^(2/3). These traits have been rescaled to lie on the interval [0,1]. Checksum values are as follows: For fynbos_trait_matrix.csv the columns sum to: col 1 (life.form.graminoid) = 19, col 2 = 2, col. 3 = 5.84708, col. 4 = 24, col. 5 = 18.09093, col. 6 = 14, col. 7 = 7.75024, col. 8 = 8.16681, col. 9 = 6.7815, and last col. = 8.2096. For fynbos_abundance_matrix.csv, all columns sum to 1.
DOI: 10.6084/m9.figshare.3551649.v1
title: Supplement 1. R code and fynbos data set.

description: File List Merow_et_al_R_code.r -- R code for all analyses fynbos_abundance_matrix.csv -- matrix of relative abundance (rows) by sites (columns) fynbos_trait_matrix.csv -- matrix of species (rows) by traits (columns) Description The file Merow_et_al_R_code.r contains R code for constructing the EM models shown in the main text. This includes the basic EM model, calculating the Hellinger fit metric, Lagrange multipliers and plotting results for both local and regional communities. We also include code for predicting community-aggregated traits from splines, cross validation, generating informative priors and permutation tests. The file fynbos_abundance_matrix.csv contains site by site relative abundance data for the eight elevational communities we used (derived from 43 5 × 10 m releves) from the Baviaanskloof Mountains, South Africa. The file fynbos_trait_matrix.csv contains data for each species on the following traits: graminoid (binary), succulent (binary), maximum height, leaf longevity (ordinal 1–3, 1 is lowest), flowering duration, pubescence (binary), leaf width, leaf perimeter^2/leaf area, leaf area/basal diameter, stem length/stem basal diameter^(2/3). These traits have been rescaled to lie on the interval [0,1]. Checksum values are as follows: For fynbos_trait_matrix.csv the columns sum to: col 1 (life.form.graminoid) = 19, col 2 = 2, col. 3 = 5.84708, col. 4 = 24, col. 5 = 18.09093, col. 6 = 14, col. 7 = 7.75024, col. 8 = 8.16681, col. 9 = 6.7815, and last col. = 8.2096. For fynbos_abundance_matrix.csv, all columns sum to 1.
DOI: 10.6084/m9.figshare.3551646
title: Appendix A. Four different gametic pathways.

description: Four different gametic pathways.
DOI: 10.6084/m9.figshare.3551646.v1
title: Appendix A. Four different gametic pathways.

description: Four different gametic pathways.
DOI: 10.6084/m9.figshare.3551643
title: Supplement 1. AgeNe, a program to calculate Ne and Nb in age-structured populations.

description: File List AgeNe.exe<br> Main.f95<br> Calcul.f95<br> InOut.f95<br> AgeNe - Readme.pdf<br> Haploid.txt<br> TwoSex.txt<br> SexChangeTest.txt<br> Multi.txt Description AgeNe.exe - A compiled, command-line PC program that performs the analyses described in the text<br> Main.f95 - Fortran95 source code for the main AgeNe program<br> Calcul.f95 - Fortran95 source code for subroutines that do most of the AgeNe calculations<br> InOut.f95 - Fortran95 source code for subroutines that handle input and output files<br> AgeNe - Readme.pdf - Explains how to operate the program<br> Haploid.txt - Sample input file for haploid life history<br> TwoSex.txt - Sample input file for species with separate sexes and no sex change<br> SexChangeTest.txt - Sample input file for species with separate sexes and the possibility of sex change<br> Multi.txt - Example of an input file that includes sequential input files for multiple populations
DOI: 10.6084/m9.figshare.3551640
title: Appendix A. Distribution of Prunus javanica trees on the Mo Singto Forest Dynamics Plot, Khao Yai National Park, Thailand.

description: Distribution of Prunus javanica trees on the Mo Singto Forest Dynamics Plot, Khao Yai National Park, Thailand.
DOI: 10.6084/m9.figshare.3551643.v1
title: Supplement 1. AgeNe, a program to calculate Ne and Nb in age-structured populations.

description: File List AgeNe.exe<br> Main.f95<br> Calcul.f95<br> InOut.f95<br> AgeNe - Readme.pdf<br> Haploid.txt<br> TwoSex.txt<br> SexChangeTest.txt<br> Multi.txt Description AgeNe.exe - A compiled, command-line PC program that performs the analyses described in the text<br> Main.f95 - Fortran95 source code for the main AgeNe program<br> Calcul.f95 - Fortran95 source code for subroutines that do most of the AgeNe calculations<br> InOut.f95 - Fortran95 source code for subroutines that handle input and output files<br> AgeNe - Readme.pdf - Explains how to operate the program<br> Haploid.txt - Sample input file for haploid life history<br> TwoSex.txt - Sample input file for species with separate sexes and no sex change<br> SexChangeTest.txt - Sample input file for species with separate sexes and the possibility of sex change<br> Multi.txt - Example of an input file that includes sequential input files for multiple populations
DOI: 10.6084/m9.figshare.3551640.v1
title: Appendix A. Distribution of Prunus javanica trees on the Mo Singto Forest Dynamics Plot, Khao Yai National Park, Thailand.

description: Distribution of Prunus javanica trees on the Mo Singto Forest Dynamics Plot, Khao Yai National Park, Thailand.
DOI: 10.6084/m9.figshare.3551637
title: Appendix B. Details on animals feeding on Prunus javanica fruit and seeds.

description: Details on animals feeding on Prunus javanica fruit and seeds.
DOI: 10.6084/m9.figshare.3551637.v1
title: Appendix B. Details on animals feeding on Prunus javanica fruit and seeds.

description: Details on animals feeding on Prunus javanica fruit and seeds.
DOI: 10.6084/m9.figshare.3551634
title: Appendix A. Sample site information.

description: Sample site information.
DOI: 10.6084/m9.figshare.3551631
title: Appendix B. A description and the analysis of Superposed Epoch Analysis (SEA) used to evaluate climate conditions during and prior to release events from 1761 to 2003.

description: A description and the analysis of Superposed Epoch Analysis (SEA) used to evaluate climate conditions during and prior to release events from 1761 to 2003.
DOI: 10.6084/m9.figshare.3551634.v1
title: Appendix A. Sample site information.

description: Sample site information.
DOI: 10.6084/m9.figshare.3551631.v1
title: Appendix B. A description and the analysis of Superposed Epoch Analysis (SEA) used to evaluate climate conditions during and prior to release events from 1761 to 2003.

description: A description and the analysis of Superposed Epoch Analysis (SEA) used to evaluate climate conditions during and prior to release events from 1761 to 2003.
DOI: 10.6084/m9.figshare.3551628
title: Appendix C. Site-level information on spruce beetle activity for sites on the Alaska Peninsula.

description: Site-level information on spruce beetle activity for sites on the Alaska Peninsula.
DOI: 10.6084/m9.figshare.3551628.v1
title: Appendix C. Site-level information on spruce beetle activity for sites on the Alaska Peninsula.

description: Site-level information on spruce beetle activity for sites on the Alaska Peninsula.
DOI: 10.6084/m9.figshare.3551625
title: Appendix D. Histogram of median spruce beetle outbreak intervals for 37 sites in southwest and south-central Alaska.

description: Histogram of median spruce beetle outbreak intervals for 37 sites in southwest and south-central Alaska.
DOI: 10.6084/m9.figshare.3551625.v1
title: Appendix D. Histogram of median spruce beetle outbreak intervals for 37 sites in southwest and south-central Alaska.

description: Histogram of median spruce beetle outbreak intervals for 37 sites in southwest and south-central Alaska.
DOI: 10.6084/m9.figshare.3551622
title: Appendix E. Interannual to multidecadal scale analysis of climate conditions during and prior to randomly selected release events and extreme climate events.

description: Interannual to multidecadal scale analysis of climate conditions during and prior to randomly selected release events and extreme climate events.
DOI: 10.6084/m9.figshare.3551622.v1
title: Appendix E. Interannual to multidecadal scale analysis of climate conditions during and prior to randomly selected release events and extreme climate events.

description: Interannual to multidecadal scale analysis of climate conditions during and prior to randomly selected release events and extreme climate events.
DOI: 10.6084/m9.figshare.3551619
title: Appendix A. Rarefaction curve for nine vegetation types on Macquarie Island standardized by sample effort of springtails.

description: Rarefaction curve for nine vegetation types on Macquarie Island standardized by sample effort of springtails.
DOI: 10.6084/m9.figshare.3551619.v1
title: Appendix A. Rarefaction curve for nine vegetation types on Macquarie Island standardized by sample effort of springtails.

description: Rarefaction curve for nine vegetation types on Macquarie Island standardized by sample effort of springtails.
DOI: 10.6084/m9.figshare.3551616
title: Appendix B. Mean density of each of the springtail species in each vegetation type sampled on Macquarie Island.

description: Mean density of each of the springtail species in each vegetation type sampled on Macquarie Island.
DOI: 10.6084/m9.figshare.3551616.v1
title: Appendix B. Mean density of each of the springtail species in each vegetation type sampled on Macquarie Island.

description: Mean density of each of the springtail species in each vegetation type sampled on Macquarie Island.
DOI: 10.6084/m9.figshare.3551613
title: Appendix C. Model selection summary for the density of indigenous species at the site scale (metacommunity), with predictor variables of vegetation (VEG), altitude (ALT), and altitude squared (ALT2).

description: Model selection summary for the density of indigenous species at the site scale (metacommunity), with predictor variables of vegetation (VEG), altitude (ALT), and altitude squared (ALT2).
DOI: 10.6084/m9.figshare.3551613.v1
title: Appendix C. Model selection summary for the density of indigenous species at the site scale (metacommunity), with predictor variables of vegetation (VEG), altitude (ALT), and altitude squared (ALT2).

description: Model selection summary for the density of indigenous species at the site scale (metacommunity), with predictor variables of vegetation (VEG), altitude (ALT), and altitude squared (ALT2).
DOI: 10.6084/m9.figshare.3551610
title: Appendix D. Model selection summary for the density of alien species at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.

description: Model selection summary for the density of alien species at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.
DOI: 10.6084/m9.figshare.3551610.v1
title: Appendix D. Model selection summary for the density of alien species at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.

description: Model selection summary for the density of alien species at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.
DOI: 10.6084/m9.figshare.3551607
title: Appendix E. Model selection summary for indigenous species richness at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.

description: Model selection summary for indigenous species richness at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.
DOI: 10.6084/m9.figshare.3551607.v1
title: Appendix E. Model selection summary for indigenous species richness at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.

description: Model selection summary for indigenous species richness at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.
DOI: 10.6084/m9.figshare.3551604
title: Appendix F. Model selection summary for alien species richness at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.

description: Model selection summary for alien species richness at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.
DOI: 10.6084/m9.figshare.3551601
title: Appendix G. Model selection summary for alien richness at the site scale (metacommunity), with predictor variables of VEG, ALT, ALT2, density indigenous species (DIS), DIS2, DIS × VEG, indigenous species richness (ISR), and ISR2.

description: Model selection summary for alien richness at the site scale (metacommunity), with predictor variables of VEG, ALT, ALT2, density indigenous species (DIS), DIS2, DIS × VEG, indigenous species richness (ISR), and ISR2.
DOI: 10.6084/m9.figshare.3551604.v1
title: Appendix F. Model selection summary for alien species richness at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.

description: Model selection summary for alien species richness at the site scale (metacommunity), with predictor variables of VEG, ALT, and ALT2.
DOI: 10.6084/m9.figshare.3551601.v1
title: Appendix G. Model selection summary for alien richness at the site scale (metacommunity), with predictor variables of VEG, ALT, ALT2, density indigenous species (DIS), DIS2, DIS × VEG, indigenous species richness (ISR), and ISR2.

description: Model selection summary for alien richness at the site scale (metacommunity), with predictor variables of VEG, ALT, ALT2, density indigenous species (DIS), DIS2, DIS × VEG, indigenous species richness (ISR), and ISR2.
DOI: 10.6084/m9.figshare.3551598
title: Appendix H. Model selection summary for the density of alien species at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.

description: Model selection summary for the density of alien species at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.
DOI: 10.6084/m9.figshare.3551595
title: Appendix I. Model selection summary for alien richness at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.

description: Model selection summary for alien richness at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.
DOI: 10.6084/m9.figshare.3551598.v1
title: Appendix H. Model selection summary for the density of alien species at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.

description: Model selection summary for the density of alien species at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.
DOI: 10.6084/m9.figshare.3551595.v1
title: Appendix I. Model selection summary for alien richness at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.

description: Model selection summary for alien richness at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.
DOI: 10.6084/m9.figshare.3551592
title: Appendix J. Model selection summary for density of alien species at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.

description: Model selection summary for density of alien species at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.
DOI: 10.6084/m9.figshare.3551592.v1
title: Appendix J. Model selection summary for density of alien species at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.

description: Model selection summary for density of alien species at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, DIS, DIS2, DIS × VEG, ISR, and ISR2.
DOI: 10.6084/m9.figshare.3551589
title: Appendix K. Model selection summary for density of indigenous species at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, alien species richness (ASR), ASR2, hypogastrurid density (HD), HD2, HD × VEG, other alien density (OD), OD2, and OD × VEG.

description: Model selection summary for density of indigenous species at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, alien species richness (ASR), ASR2, hypogastrurid density (HD), HD2, HD × VEG, other alien density (OD), OD2, and OD × VEG.
DOI: 10.6084/m9.figshare.3551589.v1
title: Appendix K. Model selection summary for density of indigenous species at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, alien species richness (ASR), ASR2, hypogastrurid density (HD), HD2, HD × VEG, other alien density (OD), OD2, and OD × VEG.

description: Model selection summary for density of indigenous species at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, alien species richness (ASR), ASR2, hypogastrurid density (HD), HD2, HD × VEG, other alien density (OD), OD2, and OD × VEG.
DOI: 10.6084/m9.figshare.3551583
title: Appendix L. Model selection summary for density of indigenous species at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.

description: Model selection summary for density of indigenous species at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.
DOI: 10.6084/m9.figshare.3551580
title: Appendix M. Model selection summary for indigenous species richness at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.

description: Model selection summary for indigenous species richness at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.
DOI: 10.6084/m9.figshare.3551583.v1
title: Appendix L. Model selection summary for density of indigenous species at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.

description: Model selection summary for density of indigenous species at the sample scale (interaction neighborhood), with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.
DOI: 10.6084/m9.figshare.3551580.v1
title: Appendix M. Model selection summary for indigenous species richness at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.

description: Model selection summary for indigenous species richness at the site scale (metacommunity), with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.
DOI: 10.6084/m9.figshare.3551577
title: Appendix N. Model selection summary for indigenous species richness at the sample scale (neighborhood interaction) with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.

description: Model selection summary for indigenous species richness at the sample scale (neighborhood interaction) with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.
DOI: 10.6084/m9.figshare.3551577.v1
title: Appendix N. Model selection summary for indigenous species richness at the sample scale (neighborhood interaction) with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.

description: Model selection summary for indigenous species richness at the sample scale (neighborhood interaction) with predictor variables VEG, ALT, ALT2, ASR, ASR2, HD, HD2, HD × VEG, OD, OD2, and OD × VEG.
DOI: 10.6084/m9.figshare.3551574
title: Appendix A. Parameter estimates and AIC values for models of Chestnut-sided Warblers abundance, temporary emigration, and detection probability.

description: Parameter estimates and AIC values for models of Chestnut-sided Warblers abundance, temporary emigration, and detection probability.
DOI: 10.6084/m9.figshare.3551571
title: Appendix A. Calculating probabilities for example encounter histories for both Multiple Detection State Model and the Multiple Detection Method Model.

description: Calculating probabilities for example encounter histories for both Multiple Detection State Model and the Multiple Detection Method Model.
DOI: 10.6084/m9.figshare.3551574.v1
title: Appendix A. Parameter estimates and AIC values for models of Chestnut-sided Warblers abundance, temporary emigration, and detection probability.

description: Parameter estimates and AIC values for models of Chestnut-sided Warblers abundance, temporary emigration, and detection probability.
DOI: 10.6084/m9.figshare.3551571.v1
title: Appendix A. Calculating probabilities for example encounter histories for both Multiple Detection State Model and the Multiple Detection Method Model.

description: Calculating probabilities for example encounter histories for both Multiple Detection State Model and the Multiple Detection Method Model.
DOI: 10.6084/m9.figshare.3551568
title: Appendix B. Multiple Detection State Model with 4 occupancy states and 4 observation states.

description: Multiple Detection State Model with 4 occupancy states and 4 observation states.
DOI: 10.6084/m9.figshare.3551568.v1
title: Appendix B. Multiple Detection State Model with 4 occupancy states and 4 observation states.

description: Multiple Detection State Model with 4 occupancy states and 4 observation states.
DOI: 10.6084/m9.figshare.3551565
title: Appendix C. Simulation methods.

description: Simulation methods.
DOI: 10.6084/m9.figshare.3551565.v1
title: Appendix C. Simulation methods.

description: Simulation methods.