cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/3mw8ck
title: 富源森林遊樂區蝴蝶資源調查計畫 A Survey on Butterfly Resource in Fuyuan Forest Recreation Area

description: 本研究由2015年5月至2016年4月於富源森林遊樂區由穿越線調查法與吊網誘集，共計調查到5科95屬148種蝴蝶，並發現88種不同蝴蝶種類的幼生期食草及42種成蟲蜜源植物。蝴蝶種類和數量於2015年10月和2016年4月達到高峰。物種群聚相似度分析中，主步道、環溪步道一、環溪步道二和環山步道4條調查樣線有60%相似度。潛在指標物種篩選出11種物種，分別為鳳蝶科的青鳳蝶，粉蝶科的緣點白粉蝶、異色尖粉蝶和黃蝶，灰蝶科的藍灰蝶，蛺蝶科的旖斑蝶、雙標紫斑蝶、枯葉蝶、密紋波眼蝶、森林暮眼蝶和藍紋鋸眼蝶。本研究透過詳盡調查及研究富源森林遊樂區內蝴蝶分布區域、出現月份和對植物利用之情況，將有助於管理單位對蝶類基礎資料的了解，並希望借由提供量化的多樣性指數數據、蝴蝶群聚組成分析和指標物種的篩選，有助於未來蝶類資源利用整體規劃與經營管理，亦可提升富源森林遊樂區之休憩、教育及保育功能。 In this project, A total of 148 species in 95 genera of butterflies were recorded in Fuyuan Forest Recreation Area from May 2015 to April 2016 by employing line transects and bait-trap nets. 88 larval host plants and 42 nectar plants for nectar were found in the study area. The diversity and abundance of butterfly species reached peaks in October 2015 and April 2016 respectively. In the analysis of community similarity, 4 lines (Main trail, Huanxi trail 1, Huanxi trail 2, and Huanshan trail) showed 60% similarity. 11 species were selected as potential indicator species, including Graphium sarpedon, Pieris canidia, Appias lyncida eleonora, Eurema hecabe, Zizeeria maha okinawana, Ideopsis similis, Euploea sylvester swinhoei, Kallima inachus, Ypthima multistriata, Melanitis phedima polishana, and Elymnias hypermnestra hainana. The present study provides basic information of butterflies in Fuyuan Forest Recreation Area via detailed investigation on of local distribution, months of occurrence, hostplant utilization. Besides, quantitative data of various diversity indices, analysis of butterfly communities and choice of indicator species provided in the present study may be useful for management and reasonable utilization of butterfly resources in the future. We believe the outcomes of the study may enhance the function on entertainment, education and conservation in Fuyuan Forest Recreation Area.
DOI: 10.15468/d1crnx
title: Survey of Plankton Diatoms in Nanren Lake

description: This study surveyed the plankton diatoms in Nanren Lake, Kenting National Park, Pingtung County, Taiwan. A total of 29 species of 21 genera were identified, and most species belonged to the Eunotia and Nitzschia genera. However, Aulacoseira granulata and Discostella stelligera were the dominant species.
DOI: 10.15468/vq2bdp
title: plasmopara_sphagneticolae

description: Downy mildews (oomycetes) may specifically modify the impact from invasive plants. New downy mildews are recorded for Taiwan.
DOI: 10.15468/dval23
title: thysanorea

description: The geographic distribution of Thysanorea papuana isrevised based on fresh collections from Taiwan, literature research, and type studies.The species was previously known from Papua New Guinea and India, while this is the first record from Taiwan. Ramichloridium lignicola, which was recorded from Hong Kong and Thailand is recognized as synonymous and Alysidiopsis lignicola recorded from Mexico is a possible synonym. The distribution of this species appears to be paleotropical or even pantropical.
DOI: 10.15468/kipxce
title: dinemasporium

description: The anamorphic fungus Stauronema spinificis hitherto known only from the coastal grass Spinifex littoreus in India was collected on dead leaves of Spinifex littoreus in Taiwan. Phylogenetic analysis of the internal transcribed spacer region of the ribosomal RNA genes indicated a placement within Dinemasporium and confirmed that the species is distinct from the morphologically hardly distinguishable D. cruciferum, therefore, the new combination D. spinificis is proposed.
DOI: 10.15468/2dctm6
title: 102年丹大野生動物重要棲息環境-巒大事業區蝙蝠群落調查

description: 102年巒大事業區135-148林班蝙蝠群落四季調查，於巒大事業區140、142及143林班選擇5處進行。利用蝙蝠偵測器Anabat SD1或Anabat SD2記錄蝙蝠超音波，並將調查資料與物種種類超音波標準音頻比較以判斷蝙蝠物種。四季蝙蝠調查結果，共計調查範圍內記錄到10種蝙蝠(山家蝠(Pipistrellus montanus)、東亞摺翅蝠(Miniopterus schreibersii fuliginosus)、長趾鼠耳蝠(Myotis sp.2)、長尾鼠耳蝠(Myotis sp.3)、游離尾蝠(Tadarida insignis)、堀川氏棕蝠(Eptesicus serotinus horikawai)、絨山蝠(Nyctalus plancyi velutinus)、台灣大蹄鼻蝠(Rhinolophus formosae)、台灣小蹄鼻蝠(Rhinolophus monoceros)及管鼻蝠類群)，以秋季及春季記錄物種數最多(5種)，其次為夏季(4種)，冬季記錄最少(0種)。另外，於範圍外增做調查，共記錄到4種(山家蝠、長趾鼠耳蝠、游離尾蝠及絨山蝠)，皆是調查範圍內有記錄的物種。 Bat surveys using Anabat SD1 or SD2 were conducted at 5 sites in 140, 142, and 143 compartments of the Luanda Working Circle seasonally from 2013 fall to 2014 summer. Total 10 species were found, including Pipistrellus montanus、Miniopterus schreibersii fuliginosus、Myotis sp.2、Myotis sp.3、Tadarida insignis、Eptesicus serotinus horikawai、Nyctalus plancyi velutinus、Rhinolophus formosae、Rhinolophus monoceros and Murina spp.. Fall and spring had the most species recorded (5 species), followed by summer (4 species). No bats were recorded in winter. Another 5 sites outside the Danda Major Wildlife Habitat were also surveyed for comparison. Only 4 bat species (Pipistrellus montanus、Myotis sp.2、Tadarida insignis and Nyctalus plancyi velutinus) were recorded. These 4 species were all in the above 10 species.
DOI: 10.15468/x77fge
title: Reptile Specimens of Natural History Museum, Kishiwada City

description: Reptile Specimens deposited in Natural History Museum, Kishiwada City
DOI: 10.15468/mzrr3d
title: Données de l'association Hommes et Territoires - Hommes et Territoires - Comptages Chiroptères 2019

description: Comptages de chauves-souris en hibernation réalisés par l'association Hommes et Territoires dans le cadre de l'animation du site Natura 2000 FR2400552 "Vallée de l'Eure de Maintenon à Anet et vallons affluents"
DOI: 10.5281/zenodo.10148454
title: groundwater response to the Lamb waves

description: including three kinds of data, water level, air pressure and strain. Their sample frequency is 1 min.
DOI: 10.5281/zenodo.10148455
title: groundwater response to the Lamb waves

description: including three kinds of data, water level, air pressure and strain. Their sample frequency is 1 min.
DOI: 10.6084/m9.figshare.25222268.v1
title: <b>Capsid-complemented Adaptation of Engineered Sindbis virus with Activity-gated RNA-knockdown</b>

description: Directed evolution is a powerful approach for enhancing biomolecule functionality by iteratively selecting and enriching fitter genotypes. Evolving mammalian protein targets in lower organisms is confounded by differences in post-translational modification. Here, we describe a mammalian platform for <i>in vivo </i>hypermutation with manual screening of variants. Capsid-complemented Adaptation of Engineered Sindbis virus with Activity-gated RNA-knockdown (CAESAR), leverages an engineered Sindbis virus variant that enables coupling of mutagenesis and selection processes. We demonstrate the reproducibility and efficacy of CAESAR through multiple campaigns, showcasing its ability to generate solutions for the evolution of tTA using an RNA-based targeting system. CAESAR addresses the limitations of previous platforms, allowing for serial passaging and transgene maintenance with a selection circuit that enables gene flow and mutagenesis between rounds through the use of defective interfering particles and defective helper RNA. This three-component, RNA-based platform opens new avenues for mammalian hypermutation systems, enabling the creation of bespoke genes with improved functionality
DOI: 10.6084/m9.figshare.25222268
title: <b>Capsid-complemented Adaptation of Engineered Sindbis virus with Activity-gated RNA-knockdown</b>

description: Directed evolution is a powerful approach for enhancing biomolecule functionality by iteratively selecting and enriching fitter genotypes. Evolving mammalian protein targets in lower organisms is confounded by differences in post-translational modification. Here, we describe a mammalian platform for <i>in vivo </i>hypermutation with manual screening of variants. Capsid-complemented Adaptation of Engineered Sindbis virus with Activity-gated RNA-knockdown (CAESAR), leverages an engineered Sindbis virus variant that enables coupling of mutagenesis and selection processes. We demonstrate the reproducibility and efficacy of CAESAR through multiple campaigns, showcasing its ability to generate solutions for the evolution of tTA using an RNA-based targeting system. CAESAR addresses the limitations of previous platforms, allowing for serial passaging and transgene maintenance with a selection circuit that enables gene flow and mutagenesis between rounds through the use of defective interfering particles and defective helper RNA. This three-component, RNA-based platform opens new avenues for mammalian hypermutation systems, enabling the creation of bespoke genes with improved functionality
DOI: 10.5281/zenodo.10553975
title: Supporting Material for "How long-lived grains dominate the shape of the Zodiacal Cloud"

description: The supporting material for 'How long-lived grains dominate the shape of the Zodiacal Cloud'.

This contribution contains:



Numerical integrations used for the test case described in Section 4 of our manuscript (Test_Case.tar.gz);

A subset of numerical integrations of Jupiter-family comets used manuscript:



Particle diameters between 0.6813 um and 3.162 um (JFC_Dataset_Sample_0.6813_3.162um.tar.gz)

Particle diameters between 4.642 um and 21.54 um (JFC_Dataset_Sample_4.642_21.54um.tar.gz)

Particle diameters between 31.62 um and 146.8 um (JFC_Dataset_Sample_31.62_146.8um.tar.gz)

Particle diameters between 215.4 um and 1000 um (JFC_Dataset_Sample_215.4_1000um.tar.gz)

Particle diameters between 1468 um and 10000 um (JFC_Dataset_Sample_1468_10000um.tar.gz)



Text files with observational constraints from CMOR and AMOR radars (Data_Constraints.tar.gz)

Sample inputs for running various cases described in the manuscript (Sample_Inputs.tar.gz)


---

Data description:

Binary files with numerical integrations (Test_Case.tar.gz and JFC_Dataset_Samples) - each line in the files has the following format: 



particle id (integer - 4 bytes)

simulation time (float - 4 bytes - unit: years)

position x (float - 4 bytes - unit: au)

position y (float - 4 bytes - unit: au)

position z (float - 4 bytes - unit: au)

velocity x (float - 4 bytes - unit: au/day)

velocity y (float - 4 bytes - unit: au/day)

velocity z (float - 4 bytes - unit: au/day)


Total 32 bytes per line (particle record)

Data_Constrains.tar.gz and Sample_Inputs.tar.gz are ASCII files.

---

This dataset is intended to be used by the collisional grooming code that can be found here - https://github.com/McFly007/collisional-grooming
DOI: 10.5281/zenodo.10553976
title: Supporting Material for "How long-lived grains dominate the shape of the Zodiacal Cloud"

description: The supporting material for 'How long-lived grains dominate the shape of the Zodiacal Cloud'.

This contribution contains:



Numerical integrations used for the test case described in Section 4 of our manuscript (Test_Case.tar.gz);

A subset of numerical integrations of Jupiter-family comets used manuscript:



Particle diameters between 0.6813 um and 3.162 um (JFC_Dataset_Sample_0.6813_3.162um.tar.gz)

Particle diameters between 4.642 um and 21.54 um (JFC_Dataset_Sample_4.642_21.54um.tar.gz)

Particle diameters between 31.62 um and 146.8 um (JFC_Dataset_Sample_31.62_146.8um.tar.gz)

Particle diameters between 215.4 um and 1000 um (JFC_Dataset_Sample_215.4_1000um.tar.gz)

Particle diameters between 1468 um and 10000 um (JFC_Dataset_Sample_1468_10000um.tar.gz)



Text files with observational constraints from CMOR and AMOR radars (Data_Constraints.tar.gz)

Sample inputs for running various cases described in the manuscript (Sample_Inputs.tar.gz)


---

Data description:

Binary files with numerical integrations (Test_Case.tar.gz and JFC_Dataset_Samples) - each line in the files has the following format: 



particle id (integer - 4 bytes)

simulation time (float - 4 bytes - unit: years)

position x (float - 4 bytes - unit: au)

position y (float - 4 bytes - unit: au)

position z (float - 4 bytes - unit: au)

velocity x (float - 4 bytes - unit: au/day)

velocity y (float - 4 bytes - unit: au/day)

velocity z (float - 4 bytes - unit: au/day)


Total 32 bytes per line (particle record)

Data_Constrains.tar.gz and Sample_Inputs.tar.gz are ASCII files.

---

This dataset is intended to be used by the collisional grooming code that can be found here - https://github.com/McFly007/collisional-grooming
DOI: 10.5519/qd.0an9chcx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (36 records)
DOI: 10.6084/m9.figshare.25286200
title: Hydrogen gas supplementation prior to high-intensity training reduces attenuation of nitric oxide signaling

description: During the first training week, each group received the assigned supplement (H<sub>2 </sub>or placebo) for 20 min starting 1 h before training on each training day. The seventh day in each week was a rest day, with no training program scheduled and no H<sub>2 </sub>or placebo intervention given. During the second week, considered the washout period, no participant received a supplement but participated in low-intensity training. During the third week, each group received the supplement they had not received during the first week (crossover design) while participating in the same high-intensity training as in the first week. Blood samples were collected prior to training on D1, after training on D6, and on non-training D7, of the first and the third weeks.
DOI: 10.6084/m9.figshare.25286200.v1
title: Hydrogen gas supplementation prior to high-intensity training reduces attenuation of nitric oxide signaling

description: During the first training week, each group received the assigned supplement (H<sub>2 </sub>or placebo) for 20 min starting 1 h before training on each training day. The seventh day in each week was a rest day, with no training program scheduled and no H<sub>2 </sub>or placebo intervention given. During the second week, considered the washout period, no participant received a supplement but participated in low-intensity training. During the third week, each group received the supplement they had not received during the first week (crossover design) while participating in the same high-intensity training as in the first week. Blood samples were collected prior to training on D1, after training on D6, and on non-training D7, of the first and the third weeks.
DOI: 10.6084/m9.figshare.21879048
title: Stronger compensatory thermal adaptation of soil microbial respiration with higher substrate availability

description: There are two items: the first one contains the R code (QuetalCODE.txt) whereas the second one has the data (QuetalDATA.xslx). In the latter item there are four spreadsheets. The spreadsheet "This study" contains the raw data from a Chinese forest transect. The spreadsheet "Bradford et al. (2019)" contains the raw data from American forest and herb transect. The spreadsheet "Dacal et al. (2019)" contains the raw data from a global dryland transect. The spreadsheet "METADATA" contains the associated metadata, where a description of all the variables and units can be found. All the methodological details can be found in the article.
DOI: 10.6084/m9.figshare.21879048.v4
title: Stronger compensatory thermal adaptation of soil microbial respiration with higher substrate availability

description: There are two items: the first one contains the R code (QuetalCODE.txt) whereas the second one has the data (QuetalDATA.xslx). In the latter item there are four spreadsheets. The spreadsheet "This study" contains the raw data from a Chinese forest transect. The spreadsheet "Bradford et al. (2019)" contains the raw data from American forest and herb transect. The spreadsheet "Dacal et al. (2019)" contains the raw data from a global dryland transect. The spreadsheet "METADATA" contains the associated metadata, where a description of all the variables and units can be found. All the methodological details can be found in the article.
DOI: 10.5519/qd.iys22obn
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (64 records)
DOI: 10.5519/qd.4dlzgog0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (64 records)
DOI: 10.15468/gu5fus
title: Projet éolien de la Plaine de Beaulieu - Données brutes Insectes

description: Données brutes environnementales qui concernent les insectes sur le projet éolien de La Plaine De Beaulieu.
DOI: 10.15468/k3y7h5
title: Projet de parc éolien de Louin-Inventaire naturaliste sur le groupe des insectes

description: Inventaire naturaliste sur le groupe des insectes sur un cycle biologique complet
DOI: 10.15468/2q5tq8
title: Extension de carrière de sables et graviers - Insectes_C

description: Données collectées sur le site lors des inventaires naturalistes
DOI: 10.6084/m9.figshare.25293766
title: DevCCF_P56_MRI-T2_50um.nii.gz

description: data image template<br>
DOI: 10.6084/m9.figshare.25293766.v1
title: DevCCF_P56_MRI-T2_50um.nii.gz

description: data image template<br>
DOI: 10.6084/m9.figshare.25293763
title: DevCCF_P56_MRI-T2_50um_BrainParcellationNickMask.nii.gz

description: image template mask<br>
DOI: 10.6084/m9.figshare.25293763.v1
title: DevCCF_P56_MRI-T2_50um_BrainParcellationNickMask.nii.gz

description: image template mask<br>
DOI: 10.6084/m9.figshare.25293772
title: bsplineT2MouseTemplate.nii.gz

description: image template bsplkne<br>
DOI: 10.6084/m9.figshare.25293772.v1
title: bsplineT2MouseTemplate.nii.gz

description: image template bsplkne<br>
DOI: 10.5281/zenodo.10644821
title: Data accompanying "A leaky gut dysregulates gene networks in the brain associated with immune activation, oxidative stress, and myelination in a mouse model of colitis"

description: brain_module_enrichment.csv : contains statistics from an anRichment anaylsis on all co-expression modules identified via WGCNA in brain samples (for Figure 7C)

brain_upregulated_module_enrichment_collapsed.csv : contains anRichment output from the gene list assembled by aggregating all 3 upregulated modules in brain samples (for Figure 6C)

brain_wgcna_results.csv : contains gene-level information for all genes in all brain regions, including gene-trait correlations and module membership statistics (for Figure 6B; this is Supplemental File 2 in the paper)

colon_module_enrichment.csv : contains anRichment output from all co-expression modules identified via WGCNA in our colon samples (for Figure 2)

colon_wgcna_results.csv : contains gene-level information for all genes in both colon regions (this is Supplemental File 1 in the paper)

raw_data.xlsx : contains raw tabular data for non-sequencing analyses in the paper, spanning several main and supplementary figures

All other files are from a DESeq2 analysis in each brain region at each time point in our study. The names of those files describe which region (the first field of the name) is being examined, and what time point (the second field of the name) is being compared to our 0d control time point. 

Most of these data, especially output from RNA sequencing data, can be recreated by following the code at https://github.com/jakesboles/Boles_et-al_DSS_time-series.
DOI: 10.5281/zenodo.10644822
title: Data accompanying "A leaky gut dysregulates gene networks in the brain associated with immune activation, oxidative stress, and myelination in a mouse model of colitis"

description: brain_module_enrichment.csv : contains statistics from an anRichment anaylsis on all co-expression modules identified via WGCNA in brain samples (for Figure 7C)

brain_upregulated_module_enrichment_collapsed.csv : contains anRichment output from the gene list assembled by aggregating all 3 upregulated modules in brain samples (for Figure 6C)

brain_wgcna_results.csv : contains gene-level information for all genes in all brain regions, including gene-trait correlations and module membership statistics (for Figure 6B; this is Supplemental File 2 in the paper)

colon_module_enrichment.csv : contains anRichment output from all co-expression modules identified via WGCNA in our colon samples (for Figure 2)

colon_wgcna_results.csv : contains gene-level information for all genes in both colon regions (this is Supplemental File 1 in the paper)

raw_data.xlsx : contains raw tabular data for non-sequencing analyses in the paper, spanning several main and supplementary figures

All other files are from a DESeq2 analysis in each brain region at each time point in our study. The names of those files describe which region (the first field of the name) is being examined, and what time point (the second field of the name) is being compared to our 0d control time point. 

Most of these data, especially output from RNA sequencing data, can be recreated by following the code at https://github.com/jakesboles/Boles_et-al_DSS_time-series.
DOI: 10.6084/m9.figshare.25293769
title: bsplineT2MouseTemplateBrainMask.nii.gz

description: image bspline template mask<br>
DOI: 10.6084/m9.figshare.25293769.v1
title: bsplineT2MouseTemplateBrainMask.nii.gz

description: image bspline template mask<br>
DOI: 10.15468/g2u479
title: Chauvé Energies - Mamifères - Inventaire non protocolé

description: Liste des mammifères contactés pendant les différents passages sur l'aire d'étude du parc éolien de Chauvé (44)
DOI: 10.15468/6we6m7
title: Chauvé Energies - Amphibien - Inventaire non protocolé

description: Liste des amphibiens contactés pendant les différents passages sur l'aire d'étude du parc éolien de Chauvé (44)
DOI: 10.15468/8xf25n
title: Parc Eolien de Saint Aubin du Plain - Inventaire Amphibiens

description: Inventaire Amphibiens dans le cadre du projet éolien de Saint-Aubin du plain
DOI: 10.18112/openneuro.ds004993.v1.1.0
title: WIRED ICM Sample Dataset - Workshop on Intracranial Recordings in Humans, Epilepsy, DBS
DOI: 10.5281/zenodo.10714338
title: A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories

description: The dataset and scripts used in "A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories" paper.
DOI: 10.5281/zenodo.10714340
title: A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories

description: The dataset and scripts used in "A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories" paper.
DOI: 10.5281/zenodo.8386719
title: A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories

description: The dataset and scripts used in "A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories" paper.
DOI: 10.5281/zenodo.10714344
title: A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories

description: The dataset and scripts used in "A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories" paper.
DOI: 10.5281/zenodo.8386718
title: A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories

description: The dataset and scripts used in "A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories" paper.
DOI: 10.5281/zenodo.8387349
title: A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories

description: The dataset and scripts used in "A Weak Supervision-Based Approach to Improve Chatbots for Code Repositories" paper.
DOI: 10.15468/5nvz25
title: Projet éolien de Burey - Données chiroptères en période de transit printanier SM4BAT-FS

description: Etude des chiroptères au sol avec des points d'écoutes passives
DOI: 10.15468/ksh6h4
title: Centrale Photovoltaïque de Poitiers-Biard - Inventaire des chiroptères

description: Inventaire dans le cadre de l'étude d'impact sur l'environnement
DOI: 10.15468/qmdeuq
title: Parc Solaire MONSEGUR 1 et 2 - M1-2 Amphibiens Opp

description: données opportunistes amphibiens
DOI: 10.15468/365rbg
title: Centrale Photovoltaïque de Poitiers-Biard - Inventaire des insectes

description: Inventaire dans le cadre de l'étude d'impact sur l'environnement
DOI: 10.15468/kr4kkr
title: Parc éolien de Guilleville - Suivi mortalité ICPE 2019 - Guilleville

description: Première année de suivi de mortalité de l'avifaune et des chiroptères
DOI: 10.15468/mjkmcp
title: Demande d'ISDI en eau sur la commune de Buzet-sur-Tarn - Reptiles

description: Données collectées sur le site lors des inventaires naturalistes
DOI: 10.15468/6xj98g
title: Ferme éolienne du Fourris - Inventaire des chiroptère - Passive

description: Le jeu de données regroupe les données d’observation d’espèces par écoute passive