cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.24378/exe.1223
title: C/O ratios of exoplanet atmospheres
title: The carbon-to-oxygen ratio: implications for the spectra of hydrogen-dominated exoplanet atmospheres (dataset)

description: We present results from one-dimensional atmospheric simulations investigating the effect of varying the carbon-to-oxygen (C/O) ratio on the thermal structure, chemical composition and transmission and emission spectra, for irradiated hydrogen-dominated atmospheres. We find that each of these properties of the atmosphere are strongly dependent on the individual abundances (relative to hydrogen) of carbon and oxygen. We confirm previous findings that different chemical equilibrium compositions result from different sets of element abundances but with the same C/O ratio. We investigate the effect of this difference in composition on the thermal structure and simulated spectra. We also simulate observa- tions using the PandExo tool and show that these differences are observationally significant with current (i.e. Hubble Space Telescope) and future (i.e. James Webb Space Telescope) instruments. We conclude that it is important to consider the full set of individual element abundances, with respect to hydrogen, rather than the ratios of only two elements, such as the C/O ratio, particularly when comparing model predictions with observed transmission and emission spectra.
description: This is the dataset associated with the Drummond et al. (2019) article "The carbon-to-oxygen ratio: implications for the spectra of hydrogen-dominated exoplanet atmospheres" published in Monthly Notices of the Royal Astronomical Society.
description: The article associated with this dataset is located in ORE at: http://hdl.handle.net/10871/36659
DOI: 10.24378/exe.1743
title: Disc formation and fragmentation using radiative non-ideal magnetohydrodynamics (dataset)

description: We investigate the formation and fragmentation of discs using a suite of three-dimensional smoothed particle radiative magnetohydrodynamics simulations. Our models are initialised as 1 solar mass rotating Bonnor-Ebert spheres that are threaded with a uniform magnetic field. We examine the effect of including ideal and non-ideal magnetic fields, the orientation and strength of the magnetic field, and the initial rotational rate. We follow the gravitational collapse and early evolution of each system until the final classification of the protostellar disc can be determined. Of our 105 models, 41 fragment, 21 form a spiral structure but do not fragment, and another 12 form smooth discs. Fragmentation is more likely to occur for faster initial rotation rates and weaker magnetic fields. For stronger magnetic field strengths, the inclusion of non-ideal MHD promotes disc formation, and several of these models fragment, whereas their ideal MHD counterparts do not. For the models that fragment, there is no correlation between our parameters and where or when the fragmentation occurs. Bipolar outflows are launched in only 17 models, and these models have strong magnetic fields that are initially parallel to the rotation axis. Counter-rotating envelopes form in four slowly-rotating, strong-field models – including one ideal MHD model – indicating they form only in a small fraction of the parameter space investigated.
description: This is the data created for Wurster & Bate (2019): Disc formation and fragmentation using radiative non-ideal magnetohydrodynamics. This dataset was created using the smoothed particle magnetohydrodynamics code sphNG, which included v1.2.1 of the NICIL library (Wurster 2016) to calculate the non-ideal MHD coefficients. The raw data and important files have been uploaded; the data files can be read with either sphNG (proprietary SPH code), or with the public graphics programme Splash (Price 2007). Each model has been tarred in its own file, where the model name is the file name. For the hydrodynamic models, the names are HObb.tar.gz, where bb is 100 times the initial rotation in terms of the orbital radius. For the magnetised models, the names are aObbMuccBdd.tar.gz, where a=I (N) for ideal (non-ideal) MHD, bb is as above, cc is the normalised mass-to-flux ratio, and dd the magnetic field direction (xn for -B_x, zn for -B_z, zp for +B_z). 01_Misc.tar.gz contains some useful analysis routines and lists; 02_Images.tar.gz includes the images and code required for the figures in the manuscript, and addition figures and code that were used in the analysis. Due to high time resolution of some models, several intermediate/redundant dump files were deleted during production to save space; thus the dump numbers are not sequential in these .tar.gz files, and the missing number represent the deleted dump files.
description: The article associated with this dataset is located in ORE at: http://hdl.handle.net/10871/37605
DOI: 10.24378/exe.2383
title: Implications of different stellar spectra for the climate of tidally--locked Earth-like exoplanets (dataset)

description: Updated files (proc_t1e_published_data_UPDATED.nc.gz, sun_t1e_published_data_UPDATED.nc.gz, and t1_t1e_published_data_UPDATED.nc.gz) uploaded on 08-06-2020 to replace the original files.
description: This is the dataset used for the Eager et al. (2020) article "Implications of different stellar spectra for the climate of tidally-locked Earth-like Exoplanets" published in Astronomy & Astrophysics.
description: This contains climate simulation data for three simulations of a TRAPPIST-1e like planet orbiting different M and G dwarfs in a tidally locked configuration.
description: The article associated with this dataset is located in ORE at: http://hdl.handle.net/10871/121164
DOI: 10.5281/zenodo.5733908
title: Raw data files for the analysis of Brownian motion of single DNA molecules

description: Raw data files for the analysis of Brownian motion of single DNA molecules.
DOI: 10.5281/zenodo.5733469
title: Raw data files for the analysis of Brownian motion of single DNA molecules

description: Raw data files for the analysis of Brownian motion of single DNA molecules.
DOI: 10.6084/m9.figshare.16811542
title: Facebook Discussion with Business Experts (transcribed)

description: The data illustrates Facebook discussions between the instructor, students and the business experts and was coded items using Problem-solving Style (Selby et al., 2004) <br>Selby’s et al., (2004) outlined three problem-solving styles namely orientation to change (OC) (OC: Explorer and PS: Developer), manners in processing (MP) (MP: Internal and MP: External); and ways of deciding (WOD) (WOD: People and WOD: Task). <br>The attached datasets comprise of the mapping of the problem-solving styles of the above-mentioned styles.<br> Source: Selby, E. C., Treffinger, D. J., Isaksen, S. G., & Lauer, K. J. (2004). Defining and assessing problem‐solving style: Design and development of a new tool. The Journal of Creative Behavior, 38(4), 221-243. DOI : https://doi.org/10.1002/j.2162-6057.2004.tb01242.x <br>
DOI: 10.6084/m9.figshare.16811542.v2
title: Facebook Discussion with Business Experts (transcribed)

description: The data illustrates Facebook discussions between the instructor, students and the business experts and was coded items using Problem-solving Style (Selby et al., 2004) <br>Selby’s et al., (2004) outlined three problem-solving styles namely orientation to change (OC) (OC: Explorer and PS: Developer), manners in processing (MP) (MP: Internal and MP: External); and ways of deciding (WOD) (WOD: People and WOD: Task). <br>The attached datasets comprise of the mapping of the problem-solving styles of the above-mentioned styles.<br> Source: Selby, E. C., Treffinger, D. J., Isaksen, S. G., & Lauer, K. J. (2004). Defining and assessing problem‐solving style: Design and development of a new tool. The Journal of Creative Behavior, 38(4), 221-243. DOI : https://doi.org/10.1002/j.2162-6057.2004.tb01242.x <br>
DOI: 10.6084/m9.figshare.16811542.v1
title: Facebook Discussion with Business Experts (transcribed)

description: The data illustrates Facebook discussions between the instructor, students and the business experts.
DOI: 10.6084/m9.figshare.17090936
title: Smooth Descent shareable data

description: Datasets related to the publication of Smooth Descent, a genotyping error correction algorithm. It includes simulated diploid data with different error rates, the results of applying Smooth Descent to this data and correctness results from analysis of autopolyploid data. Please see README for a detailed description of each file.<br>
DOI: 10.6084/m9.figshare.17090936.v1
title: Smooth Descent shareable data

description: Datasets related to the publication of Smooth Descent, a genotyping error correction algorithm. It includes simulated diploid data with different error rates, the results of applying Smooth Descent to this data and correctness results from analysis of autopolyploid data. Please see README for a detailed description of each file.<br>
DOI: 10.6084/m9.figshare.17090933.v1
title: Bankit

description: SRA table
DOI: 10.6084/m9.figshare.17090933
title: Bankit

description: SRA table
DOI: 10.6084/m9.figshare.17090921
title: Tree_Mrbayes

description: NN_比对Mrbayestree_final
DOI: 10.6084/m9.figshare.17090921.v1
title: Tree_Mrbayes

description: NN_比对Mrbayestree_final
DOI: 10.6084/m9.figshare.17090909
title: Data Matrix

description: MrbyesNN_比对分区拼接
DOI: 10.6084/m9.figshare.17090909.v1
title: Data Matrix

description: MrbyesNN_比对分区拼接
DOI: 10.6084/m9.figshare.17089394.v1
title: Sequence Assembly and Base composition

description: Assembly processfinal
DOI: 10.6084/m9.figshare.17089394
title: Sequence Assembly and Base composition

description: Assembly processfinal
DOI: 10.25917/w1ve-5r50
title: It Could Be Overreaction, Not Lottery-Seeking, That Is Behind Bali, Cakici And Whitelaw’s MAX Effect; Code, Data and Additional Information
DOI: 10.6084/m9.figshare.14847147
title: R codes and data for analyses in "2021. Cascading effects of sand stabilization on pathogen communities: connecting global and local processes"

description: R codes and data for analyses in <i>2021. Cascading effects of sand stabilization on pathogen communities: connecting global and local processes</i>
DOI: 10.6084/m9.figshare.14847147.v4
title: R codes and data for analyses in "2021. Cascading effects of sand stabilization on pathogen communities: connecting global and local processes"

description: R codes and data for analyses in <i>2021. Cascading effects of sand stabilization on pathogen communities: connecting global and local processes</i>
DOI: 10.6084/m9.figshare.14847147.v3
title: R codes and data for analyses in "2021. Cascading effects of sand stabilization on pathogen communities: connecting global and local processes"

description: R codes and data for analyses in <i>2021. Cascading effects of sand stabilization on pathogen communities: connecting global and local processes</i>
DOI: 10.5281/zenodo.5733969
title: Hands-on: Reducing Number of Timeslices in SAND Interface

description: 1) Support template to reduce the number of timeslices from 96 to 8 in SAND Interface. 2) Example SAND Interface with 8 timeslices. (Kenya LCv2 Starter Kit with 8 timeslices)
DOI: 10.5281/zenodo.5733928
title: Maximum likelihood parameters for Compton coincidence

description: Supplemental data to maximum likelihood implementation of Compton coincidence detection encoded in Matlab (https://github.com/KTH-Physics-of-Medical-Imaging/Compton_coincidence)
DOI: 10.5281/zenodo.5733927
title: Maximum likelihood parameters for Compton coincidence

description: Supplemental data to maximum likelihood implementation of Compton coincidence detection encoded in Matlab (https://github.com/KTH-Physics-of-Medical-Imaging/Compton_coincidence)
DOI: 10.34740/kaggle/dsv/2865217
title: AutoXGB
DOI: 10.34777/7w6d-pf62
title: gaze and visual focus of attention in conversation and manipulation settings

description: This database contains automatically extracted features (head pose, gaze, speaking status, people/object positions) as well as manual annotations (visual focus of attention, grasp/release actions) from three different datasets: UBImpressed, KTH-Idiap Group-Interviewing Corpus, ManiGaze.
DOI: 10.6084/m9.figshare.17090966
title: Simulation data for a JGR submission

description: Raw local velocity obtained from NSE simulations (named following fracture number_stress_NS_Velocity).
DOI: 10.6084/m9.figshare.17090966.v1
title: Simulation data for a JGR submission

description: Raw local velocity obtained from NSE simulations (named following fracture number_stress_NS_Velocity).
DOI: 10.5281/zenodo.5733994
title: msd-errors - Data for variance and covariance figure

description: Data for a figure that presents the variance and covariance for a true random walk. There is a comparison shown between the numerical result from 1024 unique random walks and the analysis, by kinisi, of the same 1024 random walks.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5517/ccdc.csd.cc27plk3
title: CCDC 2076335: Experimental Crystal Structure Determination

description: Related Article: Pei-Yun Chen, Yu-Chiao Liu, Hui-Yu Hung, Ming-Lun Pan, Yu-Chen Wei, Tung-Chun Kuo, Mu-Jeng Cheng, Pi-Tai Chou, Ming-Hsi Chiang, Yao-Ting Wu|2021|Org.Lett.|23|8794|doi:10.1021/acs.orglett.1c03295
DOI: 10.5517/ccdc.csd.cc27pll4
title: CCDC 2076336: Experimental Crystal Structure Determination

description: Related Article: Pei-Yun Chen, Yu-Chiao Liu, Hui-Yu Hung, Ming-Lun Pan, Yu-Chen Wei, Tung-Chun Kuo, Mu-Jeng Cheng, Pi-Tai Chou, Ming-Hsi Chiang, Yao-Ting Wu|2021|Org.Lett.|23|8794|doi:10.1021/acs.orglett.1c03295
DOI: 10.5517/ccdc.csd.cc27plm5
title: CCDC 2076337: Experimental Crystal Structure Determination

description: Related Article: Pei-Yun Chen, Yu-Chiao Liu, Hui-Yu Hung, Ming-Lun Pan, Yu-Chen Wei, Tung-Chun Kuo, Mu-Jeng Cheng, Pi-Tai Chou, Ming-Hsi Chiang, Yao-Ting Wu|2021|Org.Lett.|23|8794|doi:10.1021/acs.orglett.1c03295
DOI: 10.6084/m9.figshare.17091014
title: Supplementary Material for: Chronic Mesenteric Ischemia: Differential Vascularsurgical Therapy and Its Outcome in a Single-Center Observational Study

description: <b><i>Aim:</i></b> The aim of this study was to investigate short-/long-term vascularsurgical patency and the outcome in chronic mesenteric ischemia (CMI) depending on the mesenteric revascularization technique and reflecting real-world data. <b><i>Methods:</i></b> This retrospective single-center observational study registered all patients who had undergone open vascularsurgical reconstruction because of CMI at a tertiary German university hospital comparing 1-versus (vs.) 2-vessel as well as antegrade versus retrograde reconstructions. <b><i>Results:</i></b> In total, 35 patients were enrolled (mean [± SD] age, 64 ± 13 [range, 45–83] years; sex ratio [m:f], 16:19 [46:54]) over 12 years. Three patients with symptoms of mesenteric ischemia because of rare causes (radiation-induced and median arcuate ligament syndrome) have been excluded. While 51% of patients underwent 1-vessel reconstruction, 49% underwent 2-vessel reconstruction. There was a trend of (i) more perioperative complications in the 2-vessel group (88.2% vs. 55.6%, <i>p</i> = 0.06) and (ii) higher morbidity at 1 year in the 2-vessel versus 1-vessel group (57.1% and 42.9%, respectively; <i>p</i> = 0.466), while the morbidity of the 2-vessel versus 1-vessel group at 5 years (100% vs. 33.3%) was significantly different (<i>p</i> = 0.009). The mortality was greater in the 2-vessel versus 1-vessel group as it was significantly different in the early postoperative period (31.3% vs. 0, <i>p</i> = 0.016) and at 1 year (50% vs. 0, <i>p</i> = 0.005) and 5 years (100% vs. 11%, <i>p</i> = 0.003). Regarding overall survival, the 1-vessel group showed a significant superiority above the 2-vessel group (<i>p</i> = 0.004). Actually, there was no significant difference of early postoperative morbidity comparing the retrograde and antegrade group (<i>p</i> = 0.285) as well as at 1 year and 5 years (<i>p</i> = 0.715 and <i>p</i> = 0.620, respectively). In addition, there was no significantly different postoperative mortality in antegrade versus retrograde group at each time. Specific and general complication rates were 62.9% and 57.1%, respectively, resulting in an overall morbidity of 77.1% (mortality, 20%). <b><i>Conclusion:</i></b> The vascular surgeon should be prepared to perform various procedures of mesenteric reconstruction to tailor the operative strategy to the specific needs of the individual patient.
DOI: 10.6084/m9.figshare.17091014.v1
title: Supplementary Material for: Chronic Mesenteric Ischemia: Differential Vascularsurgical Therapy and Its Outcome in a Single-Center Observational Study

description: <b><i>Aim:</i></b> The aim of this study was to investigate short-/long-term vascularsurgical patency and the outcome in chronic mesenteric ischemia (CMI) depending on the mesenteric revascularization technique and reflecting real-world data. <b><i>Methods:</i></b> This retrospective single-center observational study registered all patients who had undergone open vascularsurgical reconstruction because of CMI at a tertiary German university hospital comparing 1-versus (vs.) 2-vessel as well as antegrade versus retrograde reconstructions. <b><i>Results:</i></b> In total, 35 patients were enrolled (mean [± SD] age, 64 ± 13 [range, 45–83] years; sex ratio [m:f], 16:19 [46:54]) over 12 years. Three patients with symptoms of mesenteric ischemia because of rare causes (radiation-induced and median arcuate ligament syndrome) have been excluded. While 51% of patients underwent 1-vessel reconstruction, 49% underwent 2-vessel reconstruction. There was a trend of (i) more perioperative complications in the 2-vessel group (88.2% vs. 55.6%, <i>p</i> = 0.06) and (ii) higher morbidity at 1 year in the 2-vessel versus 1-vessel group (57.1% and 42.9%, respectively; <i>p</i> = 0.466), while the morbidity of the 2-vessel versus 1-vessel group at 5 years (100% vs. 33.3%) was significantly different (<i>p</i> = 0.009). The mortality was greater in the 2-vessel versus 1-vessel group as it was significantly different in the early postoperative period (31.3% vs. 0, <i>p</i> = 0.016) and at 1 year (50% vs. 0, <i>p</i> = 0.005) and 5 years (100% vs. 11%, <i>p</i> = 0.003). Regarding overall survival, the 1-vessel group showed a significant superiority above the 2-vessel group (<i>p</i> = 0.004). Actually, there was no significant difference of early postoperative morbidity comparing the retrograde and antegrade group (<i>p</i> = 0.285) as well as at 1 year and 5 years (<i>p</i> = 0.715 and <i>p</i> = 0.620, respectively). In addition, there was no significantly different postoperative mortality in antegrade versus retrograde group at each time. Specific and general complication rates were 62.9% and 57.1%, respectively, resulting in an overall morbidity of 77.1% (mortality, 20%). <b><i>Conclusion:</i></b> The vascular surgeon should be prepared to perform various procedures of mesenteric reconstruction to tailor the operative strategy to the specific needs of the individual patient.
DOI: 10.6084/m9.figshare.16962838
title: Supplementary Material for: Rescue partial ALPPS for left hemihepatectomy with reconstruction of the middle hepatic vein

description: Major hepatectomy in patients with insufficient future liver remnant (FLR) volume and impaired liver functional reserve has considerable risks for posthepatectomy liver failure (PHLF). The patient was a male in his 70 with an intrahepatic cholangiocarcinoma (ICC) in left hemiliver, involving the middle hepatic vein (MHV). Although FLR volume after left hemihepatectomy was estimated to be 64.4% of the total liver volume, an indocyanine green retention rate at 15 min (ICG-R15) value was 24.2%, thus the patient underwent left portal vein embolization (PVE). The FLR volume increased to 71.3%, however, the non-congestive FLR volume was re-estimated as 45.8% after resection of the MHV, the ICG-R15 value was 29.0%, and ICG-Krem was calculated as 0.037. We performed partial rescue ALPPS (Associating Liver Partition and Portal vein occlusion for Staged hepatectomy) for left hemihepatectomy with the MHV reconstruction. On the first stage, partial liver partition was done along Rex-Cantlie’s line, preserving the MHV and sacrificing the remaining branches to segment 8. The FLR volume increased to 77.4% on day 14. The ICG-R15 value was 29.6%, but ICG-Krem after MHV reconstruction was estimated to be 0.059. The second stage operation on day 21 was left hemihepatectomy with the MHV reconstruction using the left superficial femoral vein graft. The usage of rescue partial ALPPS may contribute to preventing PHLF by introducing occlusion of the portal and/or venous branches in the left hemiliver before curative hepatectomy.
DOI: 10.6084/m9.figshare.16962838.v1
title: Supplementary Material for: Rescue partial ALPPS for left hemihepatectomy with reconstruction of the middle hepatic vein

description: Major hepatectomy in patients with insufficient future liver remnant (FLR) volume and impaired liver functional reserve has considerable risks for posthepatectomy liver failure (PHLF). The patient was a male in his 70 with an intrahepatic cholangiocarcinoma (ICC) in left hemiliver, involving the middle hepatic vein (MHV). Although FLR volume after left hemihepatectomy was estimated to be 64.4% of the total liver volume, an indocyanine green retention rate at 15 min (ICG-R15) value was 24.2%, thus the patient underwent left portal vein embolization (PVE). The FLR volume increased to 71.3%, however, the non-congestive FLR volume was re-estimated as 45.8% after resection of the MHV, the ICG-R15 value was 29.0%, and ICG-Krem was calculated as 0.037. We performed partial rescue ALPPS (Associating Liver Partition and Portal vein occlusion for Staged hepatectomy) for left hemihepatectomy with the MHV reconstruction. On the first stage, partial liver partition was done along Rex-Cantlie’s line, preserving the MHV and sacrificing the remaining branches to segment 8. The FLR volume increased to 77.4% on day 14. The ICG-R15 value was 29.6%, but ICG-Krem after MHV reconstruction was estimated to be 0.059. The second stage operation on day 21 was left hemihepatectomy with the MHV reconstruction using the left superficial femoral vein graft. The usage of rescue partial ALPPS may contribute to preventing PHLF by introducing occlusion of the portal and/or venous branches in the left hemiliver before curative hepatectomy.
DOI: 10.5281/zenodo.5733740
title: Cavitation Bubble Data (Parabolic Flights, 2010)

description: This dataset contains high-speed videos, time-resolved pressure measurements and auxiliary data of 247 isolated single cavitation bubbles produced in variable gravity (0g, 1g, 1.6-2g) aboard the Airbus 300 zero-g on the 53rd ESA parabolic flight campaign in October 2010. The five files contain 247 subdirectories, each of which holds the available data of exactly one cavitation bubble. The experimental setup and data structure are explained in a peer-reviewed publication in Experiments In Fluids (2013, 54:1503, DOI 10.1007/s00348-013-1503-9), titled "The quest for the most spherical bubble: experimental setup and data overview". Most of the data shown in that paper relied on these 247 cavitation bubbles, but many more cavitation bubbles have been recorded using additional sensors (e.g. spectrometer) in later experiments on parabolic flights.
description: {"references": ["https://arxiv.org/abs/1303.4872"]}