cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/5a6td7
title: Three new species of the genus Loxoconcha (Crustacea, Ostracoda, Podocopida) from the Okinawa Islands, southern Japan

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dung, Le Doan, Tsukagoshi, Akira (2014): Three new species of the genus Loxoconcha (Crustacea, Ostracoda, Podocopida) from the Okinawa Islands, southern Japan. Zootaxa 3796 (1): 147-165, DOI: http://dx.doi.org/10.11646/zootaxa.3796.1.7
DOI: 10.6073/pasta/ad1ec3799548051bd5837e65db8ba1c4
title: Ants of the Adirondack Mountains High Peaks 2016

description: The ants of the Adirondack Mountains are rarely sampled, and it was of interest to inventory their diversity as part of a general biodiversity survey of the Adirondack Park in New York State. A first set of collections were done in 2016 in the “High Peaks” region (mountains over 1200 meters (4000 feet) high). Ants were collected haphazardly from nests encountered by Adirondack Mountain trail stewards during June and July 2016 when they were doing regular botanical inventories and trail maintenance. Eleven species were collected, with the cold-climate species Formica neorufibarbis and Camponotus herculeanus accounting for 75% of the nests encountered. The species composition of ants in the Adirondack High Peaks is similar to that of other alpine and subalpine habitats in adjacent New England.
DOI: 10.15468/cdwfr2
title: The Larvae of European Ascalaphidae (Neuroptera)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Badano, Davide, Pantaleoni, Roberto Antonio (2014): The Larvae of European Ascalaphidae (Neuroptera). Zootaxa 3796 (2): 287-319, DOI: http://dx.doi.org/10.11646/zootaxa.3796.2.4
DOI: 10.6084/m9.figshare.14932545
title: A Highly Complex, MHC-Linked, 350 Million-Year-Old Shark Nonclassical Class I Lineage.

description: File 1_Fig1 New UEA seq_ListThe new MHC class I UEA sequences present in the Figure 1.<br>File 2_MHCI_UAA a3_query<br>The MHC class I UAA sequences of the alpha 3 domain used in gene expression estimation with RSEM (Figure 6).<br><br>File 3_MHCI_UEA a3_query<br>The MHC class I UEA sequences of the alpha 3 domain used in gene expression estimation with RSEM (Figure 6). <br>
DOI: 10.6084/m9.figshare.14932545.v2
title: A Highly Complex, MHC-Linked, 350 Million-Year-Old Shark Nonclassical Class I Lineage.

description: File 1_Fig1 New UEA seq_ListThe new MHC class I UEA sequences present in the Figure 1.<br>File 2_MHCI_UAA a3_query<br>The MHC class I UAA sequences of the alpha 3 domain used in gene expression estimation with RSEM (Figure 6).<br><br>File 3_MHCI_UEA a3_query<br>The MHC class I UEA sequences of the alpha 3 domain used in gene expression estimation with RSEM (Figure 6). <br>
DOI: 10.6084/m9.figshare.14932545.v1
title: A Highly Complex, MHC-Linked, 350 Million-Year-Old Shark Nonclassical Class I Lineage. We have identified a novel MHC lineage, UEA, a complex multigene nonclassical class I family found in sharks (division Selachii) but not detected in chimaeras (subclass Holocephali) or rays (division Batoidea).

description: File 1_Fig1 New UEA seq_ListFile 2_MHCI_UAA a3_query<br>File 3_MHCI_UEA a3_query<br>
DOI: 10.15468/gu4crs
title: Myrmecophilous rove beetles (Coleoptera: Staphylinidae) associated with Aenictus hodgsoni (Hymenoptera: Formicidae) from Thailand, with description of two new genera and three new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Maruyama, Munetoshi, Komatsu, Takashi, Katayama, Yuji, Song, Xiao-Bin, Sakchoowong, Watana (2014): Myrmecophilous rove beetles (Coleoptera: Staphylinidae) associated with Aenictus hodgsoni (Hymenoptera: Formicidae) from Thailand, with description of two new genera and three new species. Zootaxa 3796 (2): 361-373, DOI: http://dx.doi.org/10.11646/zootaxa.3796.2.8
DOI: 10.6084/m9.figshare.13251125
title: Dataset: role of basolateral amygdala metabotropic group II glutamate receptors in the response to reward-associated cues

description: Dataset and Med-PC code underlying a paper published in Psychopharmacology:<br>Garceau, C., Samaha, AN., Cordahi, T. <i>et al.</i> Metabotropic group II glutamate receptors in the basolateral amygdala mediate cue-triggered increases in incentive motivation. <i>Psychopharmacology</i> (2021). https://doi.org/10.1007/s00213-021-05907-7
DOI: 10.6084/m9.figshare.13251125.v2
title: Dataset: role of basolateral amygdala metabotropic group II glutamate receptors in the response to reward-associated cues

description: Dataset and Med-PC code underlying a paper published in Psychopharmacology:<br>Garceau, C., Samaha, AN., Cordahi, T. <i>et al.</i> Metabotropic group II glutamate receptors in the basolateral amygdala mediate cue-triggered increases in incentive motivation. <i>Psychopharmacology</i> (2021). https://doi.org/10.1007/s00213-021-05907-7
DOI: 10.6084/m9.figshare.13251125.v1
title: Dataset: role of basolateral amygdala metabotropic group II glutamate receptors in the response to reward-associated cues

description: Dataset underlying a paper published in Psychopharmacology:<br>Garceau, C., Samaha, AN., Cordahi, T. <i>et al.</i> Metabotropic group II glutamate receptors in the basolateral amygdala mediate cue-triggered increases in incentive motivation. <i>Psychopharmacology</i> (2021). https://doi.org/10.1007/s00213-021-05907-7
DOI: 10.6073/pasta/5e63490ea8c990e45aab58b92bf7a68f
title: Ant Resource Detection Distance at the Caxiuana National Forest in Brazil 2017-2018

description: Environmental change scenarios of low precipitation forecast species loss in tropical regions. These losses can affect generalist species that provide important ecosystem services, such as controlling the rate at which nutrients become available for uptake by other organisms in tropical forests. Here, we use a long-term rainwater exclusion experiment in primary Amazonian rainforest to test whether induced water stress affects the detection distance of food resources (baits) in a generalist ant guild (number of colonies, richness, and composition) that remove resources on the ground. We found that (i) overall the distance of resource removal by generalist ants did not change with drought; (ii) however, comparing ant species that occurred in drought-induced and control environments, workers walked shorter distances in the drought habitat; (iii) the number of resources detected by ant colonies in the drought-induced habitat decreased by 50%. Although generalist ants are considered resilient to habitat disturbance, the effect of reduced rainfall can negatively affect the services mediated by them. The rate of removal and consumption of resources in tropical forests may be related to abundance of generalist ants; losses in both nest density and walking distances may cause cascading effects on ecosystem processes and the services they mediate.
DOI: 10.6073/pasta/f40d1b6a9c65736c30a6b3eb7d0fe322
title: Gypsy Moth Defoliation Survey at the Quabbin Watershed in Central Massachusetts 2017

description: For most of the 20th century, the invasive gypsy moth (Lymantria dispar) was the most serious insect threat to forests and shade trees in the northeastern United States, but outbreaks have been sporadic and light since 1989, after the successful establishment of a fungal pathogen, Entomophaga maimaiga. However, in 2016 a surprising new outbreak of gypsy moth began in southern New England, resulting in dramatic oak (Quercus spp.) mortality across thousands of forested hectares by 2018. In 2017, during the height of the outbreak, a rapid assessment of defoliation across 486 plots in six clusters (aka ‘hotspots’) across the Quabbin Watershed Forest in central Massachusetts was conducted. These sample points can be related to satellite-based defoliation estimates, and the tree and site data analyzed for predictors of defoliation severity.
DOI: 10.6084/m9.figshare.14933175
title: Supplementary Material for: The heterogeneity of response of PC12 cell lines from different laboratories to NGF and PACAP questions the reproducibility of studies carried out with tumor cell lines

description: Medicine
DOI: 10.6084/m9.figshare.14933175.v1
title: Supplementary Material for: The heterogeneity of response of PC12 cell lines from different laboratories to NGF and PACAP questions the reproducibility of studies carried out with tumor cell lines

description: Medicine
DOI: 10.5519/qd.7b8bfgnr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (203 records)
DOI: 10.6084/m9.figshare.14933202
title: Supplementary Material for: The heterogeneity of response of PC12 cell lines from different laboratories to NGF and PACAP questions the reproducibility of studies carried out with tumor cell lines

description: Medicine
DOI: 10.6084/m9.figshare.14933202.v1
title: Supplementary Material for: The heterogeneity of response of PC12 cell lines from different laboratories to NGF and PACAP questions the reproducibility of studies carried out with tumor cell lines

description: Medicine
DOI: 10.6073/pasta/515c7730856a231a64a0b1a0152adace
title: Harvard Forest Summer Research Program in Ecology Student Surveys 2016-2021

description: Program Context Since its inception in 1985, when a single undergraduate worked on a study of old-growth forests, the Harvard Forest Summer Research Program in Ecology (HF-SRPE) has developed into a thriving and well-coordinated program that is central to the educational and research mission of the biological field station. With core support since 1993 from a succession of NSF REU Site awards and NSF REU supplements, and with additional funding from Harvard University, HF-SRPE has grown to support 20-30 undergraduate students annually. Students are mentored by principle investigators and senior scientists in conducting research in ecology, soil science, paleoecology, wildlife biology, conservation biology, and atmospheric sciences. The research conducted by our HF-SRPE students contributes substantially to long-term scientific investigations supported by NSF’s Long-Term Ecological Research (LTER) and National Ecological Observatory Network (NEON), NASA Earth System Science Pathfinder (ESSP) – Earth Ventures (EV) programs, The Smithsonian Institution’s ForestGEO network of plots, and Department of Energy’s (DOE) National Institute for Global Environmental Change (NIGEC). The overarching objectives of the program are to: enhance the ability of students to undertake high-quality interdisciplinary research; build teams of researchers in which students bring different strengths to the table, collaborate on cutting-edge projects, and find their own intellectual “voice”; encourage students to link fundamental and applied issues in their research; and cultivate the next generation of ecological scientists and educators that reflects the diversity of backgrounds and experiences of students in the United States. Problem Statement Starting in 2005 the National Science Foundation (NSF), as one of the largest funders of undergraduate research programs, began emphasizing the use of project evaluations to both qualitatively and quantitatively measure the success of REU programs (Research Experiences for Undergraduates (REU) Supplements and Sites: Program Solicitation NSF 05-592, 2005). One objective of this initiative, reaffirmed by the America COMPETES Reauthorization Act of 2010, is to track the success and outcomes of REU participants. Section 514 of this Act requires that “student participants are tracked, for employment and continued matriculation in STEM fields, through receipt of the undergraduate degree and for at least 3 years thereafter”. Due to the long-term mission of Harvard Forest and the HF-SRPE, we are actively tracking the success of participants following their participation in the program.
DOI: 10.6073/pasta/cbf9183d187ffa5f30f34bb8410e6611
title: Seedling Survey of the CTFS-ForestGEO Plot at Harvard Forest since 2017

description: Within a species, trees can vary in size by many orders of magnitude, from tiny seedlings to multi-ton adults. This intraspecific variation in tree size has important consequences for forest structure and function, as it governs patterns of tree abundance, growth rate and energy flux. Recent theoretical models make predictions about size-energy patterns of forests but available evidence indicates deviation from predictions for the smallest and largest trees. The goal of this project is to examine seedling and canopy tree demography at Harvard forest and explore their theoretical implications. We will link early remote sensing data from the National Ecological Observatory Network (NEON) with boots-on-the-ground measurements at Harvard plots. We will also fit demographic models of the trees of this forest in transition.
DOI: 10.6084/m9.figshare.14933217
title: Supplementary Material for: The heterogeneity of response of PC12 cell lines from different laboratories to NGF and PACAP questions the reproducibility of studies carried out with tumor cell lines

description: Medicine
DOI: 10.6084/m9.figshare.14933217.v1
title: Supplementary Material for: The heterogeneity of response of PC12 cell lines from different laboratories to NGF and PACAP questions the reproducibility of studies carried out with tumor cell lines

description: Medicine
DOI: 10.6084/m9.figshare.14933223
title: Supplementary Material for: The heterogeneity of response of PC12 cell lines from different laboratories to NGF and PACAP questions the reproducibility of studies carried out with tumor cell lines

description: Medicine
DOI: 10.6084/m9.figshare.14933223.v1
title: Supplementary Material for: The heterogeneity of response of PC12 cell lines from different laboratories to NGF and PACAP questions the reproducibility of studies carried out with tumor cell lines

description: Medicine
DOI: 10.6073/pasta/fa630e130b9d062756d8541cd55e6725
title: Coarse Roots and Rock Content in Oak, Hemlock, and Ash Stands at Harvard Forest 2020

description: When collecting soil samples in the very rocky soils of the Harvard Forest, researchers are forced to core the soil away from rocks. Thus, the resulting samples tend to underestimate the rock content of the soil and overestimate the sand, silt, and other fine particles content. When scaling the results to a spatial area larger than the sample’s (e.g., m2, hectare) it is important to know the actual rock content of the soil to apply the right correction factor. Therefore, we dug pits in three different stands at the Harvard Forest to determine the rock content. At the same time we also collected coarse roots (&gt;2mm diameter) to measure their biomass, which can’t be easily done using the usual soil coring techniques.
DOI: 10.5281/zenodo.4698479
title: Effects of COVID-19 lockdowns on fine particulate matter concentrations dataset

description: Monthly regional PM<sub>2.5</sub> estimates for China, Europe, and North America for January-April 2018 to 2020. M. S. Hammer, A. van Donkelaar, R. V. Martin, E. E. McDuffie, A. Lyapustin, A. M. Sayer, N. C. Hsu, R. C. Levy, M. J. Garay, O. V. Kalashnikova, R. A. Kahn, Effects of COVID-19 lockdowns on fine particulate matter concentrations. Sci. Adv.7, eabg7670 (2021).
DOI: 10.5281/zenodo.4698478
title: Effects of COVID-19 lockdowns on fine particulate matter concentrations dataset

description: Monthly regional PM<sub>2.5</sub> estimates for China, Europe, and North America for January-April 2018 to 2020. M. S. Hammer, A. van Donkelaar, R. V. Martin, E. E. McDuffie, A. Lyapustin, A. M. Sayer, N. C. Hsu, R. C. Levy, M. J. Garay, O. V. Kalashnikova, R. A. Kahn, Effects of COVID-19 lockdowns on fine particulate matter concentrations. Sci. Adv.7, eabg7670 (2021).
DOI: 10.15468/qt2t6v
title: A revision of the bathyal and abyssal necrophage genus Cyclocaris Stebbing, 1888 (Crustacea: Amphipoda: Cyclocaridae) with the addition of two new species from the Atlantic Ocean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Horton, Tammy, Thurston, Michael H. (2014): A revision of the bathyal and abyssal necrophage genus Cyclocaris Stebbing, 1888 (Crustacea: Amphipoda: Cyclocaridae) with the addition of two new species from the Atlantic Ocean. Zootaxa 3796 (3): 507-527, DOI: http://dx.doi.org/10.11646/zootaxa.3796.3.6
DOI: 10.6073/pasta/6bef3363a4e57a7b873f74a427b67fb4
title: Effects of Forest Fragmentation on Carbon Sequestration and Respiration at Harvard Forest since 2016

description: Forest loss/fragmentation can have profound impacts on the terrestrial carbon (C) cycle by reducing forest uptake of carbon dioxide (CO2; the primary driver of anthropogenic climate change) through photosynthesis and C storage in forest biomass. Relative to intact rural forests, trees growing in forest fragments within developed landscapes typically experience conditions that can enhance growth such as warmer and longer growing seasons (i.e. urban heat island effect) and greater light and nutrient availability (e.g., nitrogen deposition) as well as conditions that can hinder growth such as increased exposure to damaging pollutants such as ozone and higher rates of disturbance. Our research quantifies the impact of fragmentation on C uptake and respiration near forest edges. In 2016 six 600‐m2 plots were installed along forest edges at the HF, measuring 20 m along the forest edge and extending 30 m into the forest perpendicular to the forest edge. Plot biomass was mapped and tree cores were taken in all trees &gt;10cm diameter. The plots were installed at multiple edge aspects and adjacent land cover types (three meadows, two pastures, and one road). Within each plot, a pair of polyvinyl chloride soil respiration collars 20 cm in diameter × 7 cm tall and located 10 m apart was inserted approximately 2 cm into the soil at four distances from the edge (0, 10, 20, and 30m). Each plot had n = 8 collars for a total of n = 48 collars. Following installation, collars were left in the soil for at least 2 weeks to equilibrate. Air temperature, relative humidity, soil temperature, and soil moisture were logged along the center plot transect.
DOI: 10.6084/m9.figshare.14447301
title: Plant community development in a coal mining subsidence area: active versus passive revegetation

description: Vegetation restoration is a fundamental method of ecological reconstruction in disturbed areas, and revegetation can be achieved by passive (spontaneous succession) and active (human-induced) approaches. Plant community composition, productivity, and diversity were studied in coal mining subsidence areas after 0–15 years of restoration with active (AR) and passive (PR) revegetation approaches in a semiarid region. Moreover, plant community composition, succession, and their relationships with soil variables were analyzed. The results showed that both PR and AR contributed to the recovery of the plant community in terms of plant cover, density, biomass, and diversity, with AR accelerating the recovery of the plant comm unity to a greater extent than PR. Soil moisture and organic matter had close relationships with the plant community variables. The plant communities in PR sites had the same species composition as those in non-subsidence (NS) areas, which led to a more natural plant community in PR than AR sites. Plant community structure in AR sites was altered by the introduced shrubs, with mesophytes developing under the introduced shrubs. These changes produced a different successional trajectory in AR sites from that in NS sites; thus, environmental fluctuations may easily change AR community stability in semiarid environments.
DOI: 10.6084/m9.figshare.14447301.v1
title: Plant community development in a coal mining subsidence area: active versus passive revegetation

description: Vegetation restoration is a fundamental method of ecological reconstruction in disturbed areas, and revegetation can be achieved by passive (spontaneous succession) and active (human-induced) approaches. Plant community composition, productivity, and diversity were studied in coal mining subsidence areas after 0–15 years of restoration with active (AR) and passive (PR) revegetation approaches in a semiarid region. Moreover, plant community composition, succession, and their relationships with soil variables were analyzed. The results showed that both PR and AR contributed to the recovery of the plant community in terms of plant cover, density, biomass, and diversity, with AR accelerating the recovery of the plant comm unity to a greater extent than PR. Soil moisture and organic matter had close relationships with the plant community variables. The plant communities in PR sites had the same species composition as those in non-subsidence (NS) areas, which led to a more natural plant community in PR than AR sites. Plant community structure in AR sites was altered by the introduced shrubs, with mesophytes developing under the introduced shrubs. These changes produced a different successional trajectory in AR sites from that in NS sites; thus, environmental fluctuations may easily change AR community stability in semiarid environments.
DOI: 10.7284/142588
title: Fluorometer data collected during research cruise LMG1311 using a WET Labs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142596
title: GNSS (Global Navigation Satellite System) data collected during research cruise LMG1311 using a Garmin 19x instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142597
title: Gyrocompass data collected during research cruise LMG1311 using a SGB Meridian instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142598
title: INS (Inertial Navigation System) data collected during research cruise LMG1311 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.5055767
title: Model-based Lower Mekong Region Drought Combined Drought Index 8-day product (2019 - date and 3-month Forecast)

description: <strong>This index is calculated using SPI3, the anomalies of the fraction of Absorbed Photosynthetically Active Radiation (fAPAR) and soil suction (pF). </strong> <strong>Four warning categories are available:</strong> <strong>0 = None</strong> <strong>&lt; 1 = Watch (Precipitation shortage)</strong> <strong>&lt; 2 = Warning (Soil moisture deficit)</strong> <strong>&gt; 2 = Alert (Vegetation stress)</strong> <strong>Definition of watch, warning and alert can be found in Sepulcre-Canto et al., 2012 </strong>
DOI: 10.5281/zenodo.5055766
title: Model-based Lower Mekong Region Drought Combined Drought Index 8-day product (2019 - date and 3-month Forecast)

description: <strong>This index is calculated using SPI3, the anomalies of the fraction of Absorbed Photosynthetically Active Radiation (fAPAR) and soil suction (pF). </strong> <strong>Four warning categories are available:</strong> <strong>0 = None</strong> <strong>&lt; 1 = Watch (Precipitation shortage)</strong> <strong>&lt; 2 = Warning (Soil moisture deficit)</strong> <strong>&gt; 2 = Alert (Vegetation stress)</strong> <strong>Definition of watch, warning and alert can be found in Sepulcre-Canto et al., 2012 </strong>