cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18123988
title: Linked collectors and determiners for: Bibliographie de la faune, la flore et la fonge de France métropolitaine et outre-mer-Bibliographique de la faune, la flore et la fonge de France métropolitaine et outre-mer.

description: Natural history specimen data linked to collectors and determiners held within, "Bibliographie de la faune, la flore et la fonge de France métropolitaine et outre-mer-Bibliographique de la faune, la flore et la fonge de France métropolitaine et outre-mer". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/d18935d7-260c-4633-af39-7eb7ee6f1e14 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/d18935d7-260c-4633-af39-7eb7ee6f1e14. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18123989
title: Linked collectors and determiners for: Surveys of the bee (Hymenoptera: Apiformes) community in northern hardwood forest and wildlife clearings using pan traps.

description: Natural history specimen data linked to collectors and determiners held within, "Surveys of the bee (Hymenoptera: Apiformes) community in northern hardwood forest and wildlife clearings using pan traps". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/d6a5709f-1de0-4963-b9f9-a882026a968c using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/d6a5709f-1de0-4963-b9f9-a882026a968c. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18123990
title: Linked collectors and determiners for: CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de Pascal Dupont.

description: Natural history specimen data linked to collectors and determiners held within, "CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de Pascal Dupont". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/eae096ac-c585-4234-99cb-b32e7c517604 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/eae096ac-c585-4234-99cb-b32e7c517604. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18123991
title: Linked collectors and determiners for: La Planète revisitée - Corse 2019-2022-La Planète Revisitée Corse 2021 : prospections Côte orientale et Cap Corse.

description: Natural history specimen data linked to collectors and determiners held within, "La Planète revisitée - Corse 2019-2022-La Planète Revisitée Corse 2021 : prospections Côte orientale et Cap Corse". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/f0487d1d-4466-4c50-9e8a-6789ba94c6f7 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/f0487d1d-4466-4c50-9e8a-6789ba94c6f7. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18123959
title: GSE22544 Expression Data

description: Integration of transcript expression, copy number and LOH analysis of infiltrating ductal carcinoma of the breast: expression analysis.

A major challenge in the interpretation of genomic profiling data generated from breast cancer samples is the identification of driver genes as distinct from bystander genes which do not impact tumorigenesis. One way to assess the relative importance of alterations in the transcriptome profile is to combine complementary analyses that assess changes in the copy number alterations (CNAs). This integrated analysis permits the identification of genes with altered expression that map within specific chromosomal regions that demonstrate copy number alterations, providing a mechanistic approach to identify the 'driver genes’.

We have performed whole genome analysis of CNAs using the Affymetrix 250K Mapping array on 22 infiltrating ductal carcinoma samples (IDCs). Analysis of transcript expression alterations was performed using the Affymetrix U133 Plus2.0 array on 16 IDC samples. Twelve IDC samples were analyzed using both platforms and the data integrated. We also incorporated data from LOH analysis to identify genes showing loss of expression in LOH regions.
DOI: 10.5281/zenodo.18123958
title: GSE22544 Expression Data

description: Integration of transcript expression, copy number and LOH analysis of infiltrating ductal carcinoma of the breast: expression analysis.

A major challenge in the interpretation of genomic profiling data generated from breast cancer samples is the identification of driver genes as distinct from bystander genes which do not impact tumorigenesis. One way to assess the relative importance of alterations in the transcriptome profile is to combine complementary analyses that assess changes in the copy number alterations (CNAs). This integrated analysis permits the identification of genes with altered expression that map within specific chromosomal regions that demonstrate copy number alterations, providing a mechanistic approach to identify the 'driver genes’.

We have performed whole genome analysis of CNAs using the Affymetrix 250K Mapping array on 22 infiltrating ductal carcinoma samples (IDCs). Analysis of transcript expression alterations was performed using the Affymetrix U133 Plus2.0 array on 16 IDC samples. Twelve IDC samples were analyzed using both platforms and the data integrated. We also incorporated data from LOH analysis to identify genes showing loss of expression in LOH regions.
DOI: 10.15468/dl.8c8jeu
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Tradescantia occidentalis"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070721-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18123994
title: Linked collectors and determiners for: La Planète Revisitée - Guyane 2014/2015-La Planète Revisitée, mission complémentaire entomologique, massif du Mitaraka, août 2015.

description: Natural history specimen data linked to collectors and determiners held within, "La Planète Revisitée - Guyane 2014/2015-La Planète Revisitée, mission complémentaire entomologique, massif du Mitaraka, août 2015". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/f6e737bf-349b-4731-81d1-330d8fe025e7 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/f6e737bf-349b-4731-81d1-330d8fe025e7. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18123992
title: Linked collectors and determiners for: V. N. Karazin Kharkiv National University herbarium (CWU), Department of Botany and Plant Ecology.

description: Natural history specimen data linked to collectors and determiners held within, "V. N. Karazin Kharkiv National University herbarium (CWU), Department of Botany and Plant Ecology". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/f0642098-7d83-403a-8ea3-8331f6c5b95d using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/f0642098-7d83-403a-8ea3-8331f6c5b95d. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18123996
title: Linked collectors and determiners for: CardObs : Observations naturalistes issues de l'outil de saisie et gestion CardObs mis en place par le Service du Patrimoine Naturel (MNHN) / UMS PatriNat (OFB - CNRS - MNHN) - Données naturalistes d'Olivier GARGOMINY saisies sous cardObs.

description: Natural history specimen data linked to collectors and determiners held within, "CardObs : Observations naturalistes issues de l'outil de saisie et gestion CardObs mis en place par le Service du Patrimoine Naturel (MNHN) / UMS PatriNat (OFB - CNRS - MNHN) - Données naturalistes d'Olivier GARGOMINY saisies sous cardObs". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/fd77b374-5ad2-4429-afac-670443d22317 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/fd77b374-5ad2-4429-afac-670443d22317. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18123995
title: Linked collectors and determiners for: National Herbarium van Suriname Collection.

description: Natural history specimen data linked to collectors and determiners held within, "National Herbarium van Suriname Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/016903de-302a-4968-a212-2d2da253bd5a using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/016903de-302a-4968-a212-2d2da253bd5a. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124002
title: Linked collectors and determiners for: University of Central Arkansas Herbarium.

description: Natural history specimen data linked to collectors and determiners held within, "University of Central Arkansas Herbarium". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/12b7c386-c9f3-4cd1-b6be-71122f2745c3 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/12b7c386-c9f3-4cd1-b6be-71122f2745c3. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124001
title: Linked collectors and determiners for: Native Bee Inventory of Missisquoi National Wildlife Refuge.

description: Natural history specimen data linked to collectors and determiners held within, "Native Bee Inventory of Missisquoi National Wildlife Refuge". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/0a4996f4-f2ec-471e-ad46-43e04df1f0d4 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/0a4996f4-f2ec-471e-ad46-43e04df1f0d4. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124006
title: Linked collectors and determiners for: Arkansas Tech University Herbarium.

description: Natural history specimen data linked to collectors and determiners held within, "Arkansas Tech University Herbarium". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1b723dca-61b4-4833-a105-9259d0e2c72a using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1b723dca-61b4-4833-a105-9259d0e2c72a. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124007
title: Linked collectors and determiners for: SeamountsOnline.

description: Natural history specimen data linked to collectors and determiners held within, "SeamountsOnline". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2931765e-0682-4a38-85eb-032964cc3792 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2931765e-0682-4a38-85eb-032964cc3792. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124008
title: Linked collectors and determiners for: A revision of Solanum section Herpystichum.

description: Natural history specimen data linked to collectors and determiners held within, "A revision of Solanum section Herpystichum". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2de37bc1-3782-435b-b655-0f9d77f7afe9 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2de37bc1-3782-435b-b655-0f9d77f7afe9. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124009
title: Linked collectors and determiners for: Epitypification of Stachyurus himalaicus (Stachyuraceae).

description: Natural history specimen data linked to collectors and determiners held within, "Epitypification of Stachyurus himalaicus (Stachyuraceae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/4ad3e116-7d57-4054-8f51-731b902cd58f using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/4ad3e116-7d57-4054-8f51-731b902cd58f. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124011
title: Linked collectors and determiners for: University of North Carolina at Chapel Hill Herbarium: Bryophytes.

description: Natural history specimen data linked to collectors and determiners held within, "University of North Carolina at Chapel Hill Herbarium: Bryophytes". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/5e6167cd-d92d-48f4-87a9-4a1fafc6853f using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/5e6167cd-d92d-48f4-87a9-4a1fafc6853f. Formatted as a Frictionless Data package.
DOI: 10.13026/zzax-sy62
title: ArchEHR-QA: A Dataset for Addressing Patient's Information Needs related to Clinical Course of Hospitalization

description: Patient's unique information needs about their hospitalization can be
addressed using clinical evidence from electronic health records (EHRs) and
artificial intelligence (AI). However, robust datasets to assess the
factuality and relevance of AI-generated responses are lacking and, to our
knowledge, none capture patient information needs in the context of their
EHRs. To address this gap, we introduce ArchEHR-QA, an expert-annotated
dataset of 134 cases from intensive care unit and emergency department
settings to evaluate the grounding capabilities of models for responding to
patient-initiated queries. The dataset consists of patient-initiated questions
posted in public domain, the corresponding clinician-interpreted questions,
the excerpts of the EHRs annotated at the sentence-level with relevance to the
question, and clinician-generated free-text answers to the questions grounded
with EHR sentences. We collect true patient health information needs expressed
in real-world health forum messages, we then align the messages to publicly
accessible real EHRs. To our knowledge, this is the first public dataset that
encapsulates patient questions and relevant clinical evidence from EHRs. We
further provide an evaluation framework to assess two critical aspects of a
grounded EHR QA system: does it identify relevant information from given
clinical evidence and does it use this information in responding to user
queries.
DOI: 10.13026/n708-sn25
title: ArchEHR-QA: A Dataset for Addressing Patient's Information Needs related to Clinical Course of Hospitalization

description: Patient's unique information needs about their hospitalization can be
addressed using clinical evidence from electronic health records (EHRs) and
artificial intelligence (AI). However, robust datasets to assess the
factuality and relevance of AI-generated responses are lacking and, to our
knowledge, none capture patient information needs in the context of their
EHRs. To address this gap, we introduce ArchEHR-QA, an expert-annotated
dataset of 134 cases from intensive care unit and emergency department
settings to evaluate the grounding capabilities of models for responding to
patient-initiated queries. The dataset consists of patient-initiated questions
posted in public domain, the corresponding clinician-interpreted questions,
the excerpts of the EHRs annotated at the sentence-level with relevance to the
question, and clinician-generated free-text answers to the questions grounded
with EHR sentences. We collect true patient health information needs expressed
in real-world health forum messages, we then align the messages to publicly
accessible real EHRs. To our knowledge, this is the first public dataset that
encapsulates patient questions and relevant clinical evidence from EHRs. We
further provide an evaluation framework to assess two critical aspects of a
grounded EHR QA system: does it identify relevant information from given
clinical evidence and does it use this information in responding to user
queries.
DOI: 10.5281/zenodo.18124013
title: Linked collectors and determiners for: Vermont Wild Bee Survey (2019-2021).

description: Natural history specimen data linked to collectors and determiners held within, "Vermont Wild Bee Survey (2019-2021)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/6832470a-d8a2-4416-a302-7807295111c1 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/6832470a-d8a2-4416-a302-7807295111c1. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124014
title: Linked collectors and determiners for: Daltonia hookeriana, a new name for Daltonia heterophylla (Wilson ex Mitt.) B. C. Ho & L. Pokorny (Daltoniaceae, Bryophyta).

description: Natural history specimen data linked to collectors and determiners held within, "Daltonia hookeriana, a new name for Daltonia heterophylla (Wilson ex Mitt.) B. C. Ho & L. Pokorny (Daltoniaceae, Bryophyta)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/6fcc6e54-2ba8-49e5-a159-b31519894263 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/6fcc6e54-2ba8-49e5-a159-b31519894263. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124015
title: Linked collectors and determiners for: Cnidarios de las Colecciones Biológicas de la Universidad del Magdalena.

description: Natural history specimen data linked to collectors and determiners held within, "Cnidarios de las Colecciones Biológicas de la Universidad del Magdalena". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/79b6d0ce-92da-44ec-886d-40fe445a017c using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/79b6d0ce-92da-44ec-886d-40fe445a017c. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124016
title: Linked collectors and determiners for: National Museum of Namibia Scorpiones Collection Data 2022.

description: Natural history specimen data linked to collectors and determiners held within, "National Museum of Namibia Scorpiones Collection Data 2022". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/7a5d39ef-1abc-442f-be56-5ccf3b27aedd using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/7a5d39ef-1abc-442f-be56-5ccf3b27aedd. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124017
title: Linked collectors and determiners for: IRVC - University of California, Irvine Herbarium.

description: Natural history specimen data linked to collectors and determiners held within, "IRVC - University of California, Irvine Herbarium". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/7fc39a52-0d5c-40e1-a6a7-c64068a1fa76 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/7fc39a52-0d5c-40e1-a6a7-c64068a1fa76. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124018
title: Linked collectors and determiners for: Taxonomic review of the Afrotropical genus Gracililema Krüger with descriptions of three new species (Lepidoptera: Erebidae: Arctiinae: Lithosiini).

description: Natural history specimen data linked to collectors and determiners held within, "Taxonomic review of the Afrotropical genus Gracililema Krüger with descriptions of three new species (Lepidoptera: Erebidae: Arctiinae: Lithosiini)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/8e80c84a-474b-4c57-9294-2afdabf2ae9b using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/8e80c84a-474b-4c57-9294-2afdabf2ae9b. Formatted as a Frictionless Data package.
DOI: 10.6084/m9.figshare.30985300
title: Experimental data and data processing

description: Experimental data and data processing
DOI: 10.6084/m9.figshare.30985300.v1
title: Experimental data and data processing

description: Experimental data and data processing
DOI: 10.5281/zenodo.18124021
title: Linked collectors and determiners for: The identity of the long-overlooked Ronabea morindoides and Patabea tenuiflora, synonymous with a species of Appunia (Rubiaceae).

description: Natural history specimen data linked to collectors and determiners held within, "The identity of the long-overlooked Ronabea morindoides and Patabea tenuiflora, synonymous with a species of Appunia (Rubiaceae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/afae9d3b-65e7-40c1-a944-79101c551194 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/afae9d3b-65e7-40c1-a944-79101c551194. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124024
title: Linked collectors and determiners for: Carnivora (Mammalia) Collection from the Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Portugal.

description: Natural history specimen data linked to collectors and determiners held within, "Carnivora (Mammalia) Collection from the Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Portugal". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/b0205619-2f7c-4eaf-9ca6-26c4cf054327 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/b0205619-2f7c-4eaf-9ca6-26c4cf054327. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124027
title: Linked collectors and determiners for: University of Arkansas at Monticello.

description: Natural history specimen data linked to collectors and determiners held within, "University of Arkansas at Monticello". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/cca05dd0-9f88-4d0a-b90a-d3f8f3a3f367 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/cca05dd0-9f88-4d0a-b90a-d3f8f3a3f367. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124028
title: Linked collectors and determiners for: Jurica-Suchy Nature Museum at Benedictine University Herbarium Specimens (Arctos).

description: Natural history specimen data linked to collectors and determiners held within, "Jurica-Suchy Nature Museum at Benedictine University Herbarium Specimens (Arctos)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/d39570b9-2972-4dbb-b41f-6826823176ae using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/d39570b9-2972-4dbb-b41f-6826823176ae. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18124031
title: Linked collectors and determiners for: Jurica-Suchy Nature Museum at Benedictine University Fossil Specimens (Arctos).

description: Natural history specimen data linked to collectors and determiners held within, "Jurica-Suchy Nature Museum at Benedictine University Fossil Specimens (Arctos)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/ebab4eda-c07d-4a40-a66a-d0f5b78a1235 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/ebab4eda-c07d-4a40-a66a-d0f5b78a1235. Formatted as a Frictionless Data package.