cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15189576.v3
title: Simple 2-Patch Vaccine Model

description: <b>Impact of Population Mixing Between a Vaccinated Majority and Unvaccinated Minority on Disease Dynamics: Implications for SARS-CoV-2</b><b></b><b><br></b><b>Abstract</b><b>Background:</b> The speed of vaccine development has been a singular achievement during the SARS-CoV-2 pandemic. However, anti-vaccination movements and disinformation efforts have resulted in suboptimal uptake of available vaccines. Vaccine opponents often frame their opposition in terms of the rights of the unvaccinated. Our objective was to explore the impact of mixing of vaccinated and unvaccinated populations on risk among vaccinated individuals.<b>Methods:</b> We constructed a simple Susceptible-Infectious-Recovered (SIR) compartmental model of a respiratory infectious disease with two connected sub-populations: vaccinated individuals and unvaccinated individuals (<b>Figure 1</b>). We modeled the non-random mixing of these two groups using a matrix approach with a mixing constant varied to simulate a spectrum of patterns ranging from random mixing to complete assortativity. We evaluated the dynamics of an epidemic within each subgroup, and in the population as a whole, and also evaluated the contact-frequency-adjusted contribution of unvaccinated individuals to risk among the vaccinated.<b>Results: </b>As expected, the relative risk of infection was markedly higher among unvaccinated individuals than among vaccinated individuals. However, the contact-adjusted contribution of unvaccinated individuals to infection risk during the epidemic was disproportionate with unvaccinated individuals contributing to infection risk among the vaccinated at a rate up to 6.4 times higher than would have been expected based on contact numbers alone in the base case. As assortativity increased the final attack rate decreased among vaccinated individuals, but the contact-adjusted contribution to risk among vaccinated individuals derived from contact with unvaccinated individuals increased.<b>Interpretation:</b> While risk associated with avoiding vaccination during a virulent pandemic accrues chiefly to the unvaccinated, the choices of these individuals are likely to impact the health and safety of vaccinated individuals in a manner disproportionate to the fraction of unvaccinated individuals in the population.
DOI: 10.6084/m9.figshare.28660484.v1
title: UCM 187.16 digital model and image set

description: UCM 187.16 pterosaur tracks<i>Pteraichnus </i>isp.Summerville Formation, Starr SpringOxfordian, Upper Jurassic
DOI: 10.6084/m9.figshare.29061068.v1
title: Decoding Urban Mobility: A Spatiotemporal Comparison of Ride-hailing and Traditional Taxi Pick-up/Drop-off Dynamics

description: This dataset is used to explore the spatiotemporal differences in the number of pick-up and drop-off passengers of ride-hailing services and taxis. It respectively includes the pick-up points, drop-off points, latitude and longitude information, and time information of passengers of taxis and ride-hailing vehicles, and is stored in the form of a csv file. It covers the data of three days, namely June 1, 2019 (weekend), June 5, 2019 (weekday), and June 7, 2019 (holiday). Gridswithfactors.shp is the grid data of the study area, and the influencing factors are stored in the attribute table.
DOI: 10.6084/m9.figshare.4726084.v1
title: 13 - DenovoAssemblies_QUAST_ReportExcel.xlsx

description: QUAST report statistics of the denovo assemblies of the 19 Prochlorococcus partial genomes from HOT.
DOI: 10.6084/m9.figshare.21923760.v1
title: Data for Metasurface-Stabilized Optical Microcavities

description: <strong>Data for Metasurface-Stabilized Optical Microcavities</strong><br> M. Ossiander <sup>1, *</sup>, M. L. Meretska<sup>1</sup>, S. Rourke<sup>1,2</sup>, C. M. Spaegele<sup>1</sup>, X. Yin<sup>1</sup>, I. C. Benea-Chelmus<sup>1,3</sup>, F. Capasso<sup>1, *<br> </sup><br> 1 John A. Paulson School of Engineering and Applied Sciences, Harvard University, 29 Oxford St, Cambridge, MA 02138, USA<br> 2 University of Waterloo, Waterloo, ON N2L 3G1, Canada<br> 3 Hybrid Photonics Laboratory, École Polytechnique Fédérale de Lausanne, Lausanne, CH-1015, Switzerland<br> * Corresponding Authors: mossiander@g.harvard.edu, capasso@seas.harvard.edu<br> Manuscript published as Nature Communications 14, 1114 (2023) https://doi.org/10.1038/s41467-023-36873-7. <br> <strong>Contents:</strong><br> A table of contents is given below, please see the individual readme files in the respective folders for a description of the included variables. ./design: design files presented in the manuscript<br> * libs: contains the metaatom libraries<br> * design_c450_h600_g4790_dbrn7_q8_ROC20.0: contains the metasurface design files for the 20 um ROC cavity<br> * design_c450_h600_g4596_dbrn7_q8_ROC20.0_phase_shifted: contains the metasurface design files for the phase shifted 20 um ROC cavity<br> * design_c4.5e-07_h600_dbrn5_mirror_dist10900hologram: contains the metasurface design files for the h-shape cavity<br> * design_c4.5e-07_h600_dbrn5_mirror_dist11050hologram_checkers: contains the metasurface design files for the asymmetric dot pattern cavity ./experimental_data: experimental measurements presented in the manuscript<br> * fabry_perot: contains transmission data for the Fabry-Perot cavity<br> * fundamental_mode_excited: contains transmission data for the cavity containing the 20 um ROC metasurface aligned for maximal fundamental mode excitation<br> * higher_mode_excited: contains transmission data for the cavity containing the 20 um ROC metasurface aligned so also higher transverse modes are excited ./simulation_data: FDTD simulations of metasurface microcavities<br> * fabry_perot_distance: contains simulation data for a Fabry-Perot cavity<br> * reflection_phase: contains simulation data to calculate the frequency penetration depth<br> * roc20um: contains simulation data for the 20 um ROC metasurface cavity, including fabrication tolerance, surface_roughness, and mode_volume data<br> * roc_20um_phase_shifted_distance: contains simulation data for the phase shifted 20 um ROC metasurface cavity<br> * h: contains simulation data for the cavity enhancing the H-shaped mode<br> * asymmetric_dot: contains simulation data for the cavity enhancing the asymmetric dot pattern mode ./SEM: SEM picture of a finalized sample<br> <br>
DOI: 10.6084/m9.figshare.26082976.v1
title: datasets

description: The mammalian nervous system controls complex functions through highly specialized and interacting structures. Single-cell sequencing can provide information on cell-type-specific chromatin structure and regulatory elements, revealing chromatin differences between different cell types and their potential roles in brain function. Here, we employed single-cells ATAC-seq to generate a chromatin accessibility dataset from 16 adult rat brain regions, obtained 174,593 high-quality nuclei. We identified cell subtypes of two cell types (neuronal and non-neuronal) with highly specific distributions and characterized gene regulatory elements associated with cell type-specific regions. To further investigate the gene regulatory network of spinal cord regeneration process, we integrated our scATAC-seq data with published single- nucleus RNA-seq data of spinal cord, identified more detailed regeneration related elements to drawGRNs centered on the transcription factor Jun in OPC. Simultaneously, we also performed similar integration analysis in midbrain. Our findings provide a solid foundation for comprehensively dissecting the molecular architecture of the mammalian nervous system.
DOI: 10.6084/m9.figshare.26390011.v3
title: reference C<sub>T</sub> calculation

description: here we show the details of the calculations following the Yang method for analyzing real-time quantitative PCR data
DOI: 10.6084/m9.figshare.6265670.v1
title: Patient33

description: Female Patient with 435 slice of pulmonary embolism CT-Angiography.
DOI: 10.6084/m9.figshare.21266568.v1
title: Data from: Back to life: Techniques for developing high-quality 3D reconstructions of plants and animals from digitized specimens

description: <strong> </strong> <strong>This is the supplementary material for </strong><em><strong>Back to life: Techniques for developing high-quality 3D reconstructions of plants and animals from digitized specimens</strong></em> <br> <strong>This folder includes:</strong> <br> <strong>Beginner tutorial:</strong> Fossil plant cupule (<em>Petriellaea triangulata</em> [Shi et al. 2021]) o <em>Included files: </em>Cupule Tutorial (.docx), 3D object files (Cupule before.stl, Cupule before.obj) o <em>Necessary software</em>: Meshlab o <em>Skills developed</em>: Shrinkwrapping, simplification <br> <strong>Intermediate tutorial: </strong>Reptile (<em>Sphenodon punctatus </em>[downloaded from Morphosource.org]) o <em>Included files</em>: Sphenodon Tutorial (.docx), 3D object files (Sphenodon with holes.stl, Sphenodon with holes.obj) o <em>Necessary software</em>: Meshlab, Autodesk Maya, Autodesk Fusion 360 o <em>Skills developed</em>: Rearticulation, repair of broken fossils, basic sculpting, shrinkwrapping. <br> <strong>Advanced tutorial: </strong>Fossil crab (<em>Cretapsara athanata</em> [Luque et al. 2021)] o <em>Included files: </em>Tutorial (.docx), 3D object files (Crab before.stl, Crab before.obj) o <em>Necessary software</em>: Meshlab, Autodesk Maya o <em>Skills developed</em>: Debris removal, structural repair, shrinkwrapping, rearticulation, smoothing and simplification <br> Meshlab is an opensource software available at https://www.meshlab.net/ <br> Autodesk Maya and Fusion 360 are available with a student and educators license at https://www.autodesk.com/education/edu-software/overview
DOI: 10.6084/m9.figshare.3843570.v1
title: Supplementary_Material2.txt (named Xenacoelomorpha_OTUs_sequences.txt in the latest submission): Fasta file with all Xenacoelomorpha sequences (OTUs) reported in this study from Hidden diversity of Acoelomorpha revealed through metabarcoding

description: All the xenoacoelomorph sequences analyzed in this study.
DOI: 10.6084/m9.figshare.22573093.v2
title: Materials Project Data

description: Data from https://materialsproject.org/ (dated 01/24/2023)
DOI: 10.6084/m9.figshare.29093270.v1
title: The simulation results of system 1 and IEEE 33 bus.xlsx

description: Simulation Results of System 1 and IEEE 33 Bus
DOI: 10.17044/nbis/g000003
title: SweGen dataset from SweGen: A whole-genome map of genetic variability in a cross-section of the Swedish population

description: A high-quality map of genetic variation in the Swedish population based on a representative cross-section of 1000 individuals.
DOI: 10.6084/m9.figshare.3381523.v1
title: Templates for Automated Fiber Quantification of corpus callosum from Diffusion MRI data

description: These templates are used to segment human corpus callosum into the major tracks, as described in Yeatman et al. 2012 (Yeatman JD, Dougherty RF, Myall NJ, Wandell BA, Feldman HM (2012) Tract Profiles of White Matter Properties: Automating Fiber-Tract Quantification. PLoS ONE 7(11): e49790. doi:10.1371/journal.pone.0049790).
DOI: 10.5281/zenodo.6625120
title: MEDIC: A Multi-Task Learning Dataset for Disaster Image Classification

description: Recent research in disaster informatics demonstrates a practical and important use case of artificial intelligence to save human lives and suffering during natural disasters based on social media contents (text and images). While notable progress has been made using texts, research on exploiting the images remains relatively under-explored. To advance image-based approaches, we propose MEDIC\footnote{Available~at: \url{https://crisisnlp.qcri.org/medic/index.html}}, which is the largest social media image classification dataset for humanitarian response consisting of 71,198 images to address four different tasks in a multi-task learning setup. This is the first dataset of its kind: social media images, disaster response, and multi-task learning research. An important property of this dataset is its high potential to facilitate research on \textit{multi-task learning}, which recently receives much interest from the machine learning community and has shown remarkable results in terms of memory, inference speed, performance, and generalization capability. Therefore, the proposed dataset is an important resource for advancing image-based disaster management and multi-task machine learning research. <br>
DOI: 10.6084/m9.figshare.21644531.v3
title: Data set on correlates of economic growth: 1970-2019

description: Beyer and Wacker (2022) data set in STATA .dta format, containing data on income levels and potential covariables for about 150 countries over the time period 1970-2019, averaged over non-overlapping 5-year periods.
DOI: 10.6084/m9.figshare.13536623.v1
title: GEVaP dataset.xlsx

description: Primary dataset for the evaluation of the Ghana Early Vaccination Program ( GEVaP) cluster randomized controlled trial. Manuscript: Mobile Nudges and Financial Incentives to Improve Coverage of Timely Neonatal Vaccination in Rural Areas (GEVaP trial): A 3-armed Cluster Randomized Controlled Trial in Northern Ghana.
DOI: 10.6084/m9.figshare.22331002.v1
title: Data for Guillotin et al.

description: Source data for Guillotein et al. main and extended data figures
DOI: 10.6084/m9.figshare.28057199.v1
title: Repository data for Commentary

description: Research information systems files and a spreadsheet of deduplicated search results
DOI: 10.6084/m9.figshare.7686578.v1
title: MOESM5 of Quantitative proteomic characterization of lung tissue in idiopathic pulmonary fibrosis

description: Additional file 5. KEGG pathway enrichment analysis of differentially expressed proteins.
DOI: 10.6084/m9.figshare.20400999.v2
title: Git labeled dataset of image diagrams

description: Datset of 3'960.877 images build from GitHub public repositories. This dataset contains a column product of the automatic classification process of a machine learning convolutional network, with 6 posible categories related to software diagrams. <strong>Label Name </strong> 0 None 1 Activity Diagram 2 Sequence Diagram 3 Class Diagram 4 Component Diagram 5 Use Case Diagram 6 Cloud Diagram It also includes information on the repository from which it was extracted. <br>
DOI: 10.6084/m9.figshare.23541558.v1
title: Data collection on 630 Chinese consumers shopping online.docx

description: There is a significant positive effect of consumers' perceived usefulness and perceived ease of use on purchase intention; there is a significant positive effect of courier service and social evaluation during consumption on perceived usefulness and perceived ease of use, but there is no significant positive effect of information promotion on consumption intention, and there is a significant positive effect of information promotion on consumers' purchase behaviour; there is a significant positive effect of product promotion on both consumers' consumption behaviour and consumption intention
DOI: 10.6084/m9.figshare.26933014.v1
title: Magi-2 Project

description: Uncovering a novel regulation of the NR1C2 splice isoform via competition between ubiquitin ligases and MAGUK scaffolding protein
DOI: 10.17632/c8cpbdn2ks
title: Data for: The Ferroelectric Properties of 4-Aminopyridinium Perchlorate

description: 4-Aminopyridinium Perchlorate (APP), used to be known as a pyroelectric below 243K, is first discovered to be a new molecular ferroelectric in this work, which has a perfect electric hysteresis loops with a large spontaneous polarization of 1.0 mC/cm2 and a small coercive field of 0.67 kV/cm below 244.5 K. As shown in XRD,owing to the dramatic changes of the protonated cations and order-disorder of anions, the crystal symmetry of APP transforms from P21/c to P21 in this first-order phase transition, which is revealed by other measurements, such as differential scanning calorimetry, dielectric anomalies and Raman spectrum.Due to the lowing of the symmetry from the ideal tetrahedral geometry, splittings can be observed for the doubly degenerate modes. The modes of 405 cm-1 at 203 K were fitted by Gaussian functions.The symmetric stretching vibration at 405 cm-1 breaks up into two bands (402 cm-1, 408 cm-1) below transition temperature.
DOI: 10.6084/m9.figshare.28318832.v1
title: Well-beingMS-Dataset_Jan2025

description: This dataset includes variables that were used in preparation of a manuscript exploring the relationship between well-being (Personal Well-Being Index) and sociodemographic and health variables including age, gender, race, education, employment status, marital status, annual household income, household size, neighborhood type, body mass index, food security, and health status. Data were collected in 2018-2019 from random households in 11 rural Georgia (USA) counties (n=2,788), as part of an evaluation of a health equity initiative.
DOI: 10.17632/fp32t78cx9
title: Adolescent mental health dataset

description: Data on adolescent mental health in Ghana
DOI: 10.17632/w8wk4h9hxc
title: Airfares in New Zealand

description: This dataset presents the domestic airfares of New Zealand’s airlines (dominating by Air New Zealand, a full-service carrier; and Jetstar, a low-cost carrier) at 12 trunk routes and 40 secondary routes in New Zealand. The data was extracted from Expedia, one of the biggest online travel meta-search engine, using a ‘web crawler’ (Octoparse.com) that collects hourly airfares of the two airlines from September 19, 2019 to December 18, 2019, a total of 90 days. It therefore provides a rich dataset of more than 162,000 observations regarding the departure time, arrival time, flight duration, airline, airfare, departure airport, arrival airport, transiting airport, and so on… That information can be conveniently used in future studies in the fields of business and economics, transportation and aviation, or management and marketing.
DOI: 10.6084/m9.figshare.12493487.v1
title: Psychometric properties of the Albanian version of the Olweus Bullying Questionnaire–Revised

description: Dataset contains items of Albanian Version of Olweus Bullying - Revised measure. In total 20 items (10 bullying and 10 victimization) and gender and grade level (primary and secondary grade). It also contains syntax inputs and outputs for data stampstat, EFA, CFA and MG-CFA across gender and grade.
DOI: 10.6084/m9.figshare.19551403.v2
title: Halftone images generated by MOO with λ= 0.7

description: Halftone images generated by MOO with lamda = 0.7. Images are numpy files and stored in Nx3x256x256 format.
DOI: 10.6084/m9.figshare.22643113.v1
title: Chloroplast genome assemblies of Sesamum and Ceratotheca species

description: This data set contains the chloroplast genome assemblies of six wild sesame relatives, namely <em>Sesamum alatum</em>, <em>Sesamum angolense</em>, <em>Sesamum pedaloides</em>, <em>Sesamum radiatum</em>, <em>Ceratotheca sesamoides</em> and <em>Ceratotheca triloba, </em>and one cultivated sesame<em> Sesamum indicum </em>var. Goenbaek. These wild sesame species belong to the genus Sesamum, which is part of the order Lamiales, and are known for exhibiting diverse phenotypes. The lack of genomic resources for wild species has made it challenging to understand the phylogenetic relationships between cultivated and wild sesame species. To address this gap, short-read genomic data (NCBI Project: PRJNA860226) were generated, and their chloroplast genomes were assembled, annotated, and used to reconstruct the phylogeny of the Sesamum species complex at a molecular level. This data set provides an important resource for researchers studying the evolutionary history of sesame species and can be used for comparative genomic analyses, phylogenetic inference, and other related studies. The dataset is deposited on Figshare and is openly accessible to the research community.
DOI: 10.6084/m9.figshare.28916312.v1
title: <b>Highly Selective Conversion of Benzyl Alcohol to Benzaldehyde Over Cu-Co Bimetallic Catalysts</b>

description: Carbonyl compounds serve as pivotal organic intermediates, with alcohol oxidation being a fundamental route for their synthesis. This study presents an efficient protocol for fabricating Cu-Co bimetallic nanoparticles as heterogeneous catalysts for the selective oxidation of benzyl alcohol to benzaldehyde. Comprehensive characterization involving UV-Vis, FT-IR, SEM-EDS, XRD, XPS, TEM/HRTEM, and VSM confirmed the successful formation of Cu-Co nanostructures with distinct synergistic interactions. Catalytic evaluation under mild conditions (40°C, TBHP oxidant) afforded a benzyl alcohol conversion of 92.19% with 98.07% selectivity toward benzaldehyde, yielding the product in 90.41% isolated yield. The catalyst demonstrated notable recyclability without significant performance decay. Mechanistic analysis revealed that the enhanced catalytic efficiency originated from the electronic synergy between Cu and Co species.
DOI: 10.6084/m9.figshare.29155727.v1
title: Data file 1. Assembly and annotation statistics of Ralstonia syzygii subsp. celebesensis UGMITBRKI_24001

description: Data present the Assembly and annotation statistics of <i>Ralstonia syzygii</i><i> </i>subsp. <i>celebesensis</i> UGMITBRKI_24001
DOI: 10.6084/m9.figshare.24921426.v1
title: List of metadata for all RNA-Seq data.

description: List of metadata for all RNA-Seq data. The sample description, Biosample ID, SRA Accession ID (SRA run ID), and Fastq file names of each RNA-seq dataset used in this study are listed.
DOI: 10.6084/m9.figshare.24938868.v3
title: CytoSignal example dataset

description: For the CytoSignal tutorial, we provide Slide-tags snRNA-seq data on mouse embryonic E14 brain. Orignal data can be accessed from Single-Cell Portal at SCP2170. Orignal work by Andrew J. C. Russell et al., 2023.Cleaning applied:Matrix data was converted into an R-interpretable sparse matrix object (dgCMatrix).Only barcodes in the intersection between the annotation and the expression matrix are kept for use.For the VeloCytoSignal tutorial, we provide Slide-seq V2 data on mouse E15 brain. Original data can be accessed from Single-Cell Portal at SCP815. Original work by Robert R. Stickels et al., 2020. We provide the original spliced and unspliced counts and clusters, spliced and unspliced velocity data produced with VeloVAE, and constructed CytoSignal object with basic analysis already performed.
DOI: 10.6084/m9.figshare.26517367.v3
title: Minimal, de-identified, aggregate datasets used to report primary outcomes and plot cumulative incidence and propensity score density for study examining the association between combined oral contraceptives and cervical artery dissection

description: Minimal, de-identified, aggregate datasets used to report primary outcomes and plot cumulative incidence and propensity score density