cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10027439.v1
title: MOESM1 of De novo gonad transcriptome analysis of the common littoral shrimp Palaemon serratus: novel insights into sex-related genes

description: Additional file 1: Table S1. Annotation table of the non-redundant P. serratus ovary and testis transcriptome. Table S2. Full list of up-regulated genes in ovary. Table S3. Full list of up-regulated genes in testis. Table S4. Results of GO enrichment analyses.
DOI: 10.6084/m9.figshare.10027442.v1
title: MOESM2 of A visual approach for analysis and inference of molecular activity spaces

description: Additional file 2. Contains all data sets (SIGMAR1, HRH1, HERG,and DRD5) retrieved from ChEMBL23, their computed NAMS similarities and R source code for analysis and inference of molecular activity spaces.
DOI: 10.6084/m9.figshare.10027436.v1
title: MOESM1 of A visual approach for analysis and inference of molecular activity spaces

description: Additional file 1: Figure S1a. Test set projection over PSMA with KMDS. b Test set projection over PSMA with SM. c Test set projection over PSMA with t-SNE. Figure S2a. DRD5 shepard plot for PCooA, KMDS, SM and t-SNE. b HRH1 shepard plot for PCooA, KMDS, SM and t-SNE. c SIGMAR1 shepard plot for PCooA, KMDS, SM and t-SNE.
DOI: 10.6084/m9.figshare.10027418
title: MOESM2 of NARD: whole-genome reference panel of 1779 Northeast Asians improves imputation accuracy of rare and low-frequency variants

description: Additional file 2: Table S1. Variant statistics. Table S2. Variant accuracy. Table S3. Data source for imputation analysis. Table S4. Imputation performance according to types of reference panel.
DOI: 10.6084/m9.figshare.12860819.v1
title: R0191_20170920a_videos

description: Rat 0191, skilled reaching data collected on 9/20/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.10027157
title: MOESM1 of Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT

description: Additional file 1: Tables S1-S6. Supplementary tables. (XLSX 7 mb)
DOI: 10.6084/m9.figshare.10027157.v1
title: MOESM1 of Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT

description: Additional file 1: Tables S1-S6. Supplementary tables. (XLSX 7 mb)
DOI: 10.6084/m9.figshare.10027142
title: MOESM2 of Transcriptomic analysis of Macrobrachium rosenbergii (giant fresh water prawn) post-larvae in response to M. rosenbergii nodavirus (MrNV) infection: de novo assembly and functional annotation

description: Additional file 2: Table S3. Full-list of differentially expressed transcripts using EdgeR.
DOI: 10.6084/m9.figshare.10027136
title: MOESM1 of Transcriptomic analysis of Macrobrachium rosenbergii (giant fresh water prawn) post-larvae in response to M. rosenbergii nodavirus (MrNV) infection: de novo assembly and functional annotation

description: Additional file 1: Table S1. Annotation results of assembled transcriptome against UniProt database. Table S2. Annotation results of assembled transcriptome against Non-redundant Arthropod database.
DOI: 10.6084/m9.figshare.10027142.v1
title: MOESM2 of Transcriptomic analysis of Macrobrachium rosenbergii (giant fresh water prawn) post-larvae in response to M. rosenbergii nodavirus (MrNV) infection: de novo assembly and functional annotation

description: Additional file 2: Table S3. Full-list of differentially expressed transcripts using EdgeR.
DOI: 10.6084/m9.figshare.10027136.v1
title: MOESM1 of Transcriptomic analysis of Macrobrachium rosenbergii (giant fresh water prawn) post-larvae in response to M. rosenbergii nodavirus (MrNV) infection: de novo assembly and functional annotation

description: Additional file 1: Table S1. Annotation results of assembled transcriptome against UniProt database. Table S2. Annotation results of assembled transcriptome against Non-redundant Arthropod database.
DOI: 10.6084/m9.figshare.10027085
title: MOESM2 of Random forest-based modelling to detect biomarkers for prostate cancer progression

description: Additional file 2: Table S2. Full list of CpG sites contributing to the model.
DOI: 10.6084/m9.figshare.10027085.v1
title: MOESM2 of Random forest-based modelling to detect biomarkers for prostate cancer progression

description: Additional file 2: Table S2. Full list of CpG sites contributing to the model.
DOI: 10.6084/m9.figshare.10027076
title: MOESM4 of Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

description: Additional file 4: Table S3. Genomic regions validated for CNVs by RT-qPCR. Primer sequences, position, product size, annealing temperature and TaqMan probes are shown. The CNV status in the SNP-array and in the qPCR and the CNV validation by qPCR are given. Table S4. Results of quantitative PCR. The results of the four CNVs per each horse and the outcome of the validation through qPCR are presented.
DOI: 10.6084/m9.figshare.10027079
title: MOESM1 of Random forest-based modelling to detect biomarkers for prostate cancer progression

description: Additional file 1: Table S1. Clinical information and cell type composition of discovery cohort samples.
DOI: 10.6084/m9.figshare.10027070
title: MOESM3 of Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

description: Additional file 3: Table S2. PANTHER gene ontology analysis of significantly over- and underrepresented genes.
DOI: 10.6084/m9.figshare.10027076.v1
title: MOESM4 of Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

description: Additional file 4: Table S3. Genomic regions validated for CNVs by RT-qPCR. Primer sequences, position, product size, annealing temperature and TaqMan probes are shown. The CNV status in the SNP-array and in the qPCR and the CNV validation by qPCR are given. Table S4. Results of quantitative PCR. The results of the four CNVs per each horse and the outcome of the validation through qPCR are presented.
DOI: 10.6084/m9.figshare.10027079.v1
title: MOESM1 of Random forest-based modelling to detect biomarkers for prostate cancer progression

description: Additional file 1: Table S1. Clinical information and cell type composition of discovery cohort samples.
DOI: 10.6084/m9.figshare.10027058
title: MOESM1 of Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

description: Additional file 1: Table S1. CNVRs identified in this study and including information regarding genome position, size, status, segment CNV counts, gene counts, number of individuals for each breed, QTL overlap and novelty.
DOI: 10.6084/m9.figshare.10027061
title: MOESM2 of Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

description: Additional file 2. List of genes overlapping with the identified CNVRs.
DOI: 10.6084/m9.figshare.10027070.v1
title: MOESM3 of Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

description: Additional file 3: Table S2. PANTHER gene ontology analysis of significantly over- and underrepresented genes.
DOI: 10.6084/m9.figshare.10027058.v1
title: MOESM1 of Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

description: Additional file 1: Table S1. CNVRs identified in this study and including information regarding genome position, size, status, segment CNV counts, gene counts, number of individuals for each breed, QTL overlap and novelty.
DOI: 10.6084/m9.figshare.10027049
title: MOESM4 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 4. BUGSnet league table obtained from the R code in Additional file 2.
DOI: 10.6084/m9.figshare.10027061.v1
title: MOESM2 of Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

description: Additional file 2. List of genes overlapping with the identified CNVRs.
DOI: 10.6084/m9.figshare.10027046
title: MOESM3 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 3. Diabetes dataset to accompany the R code in Additional file 2.
DOI: 10.6084/m9.figshare.10027052
title: MOESM5 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 5. GeMTC league table obtained from the R code in Additional file 2.
DOI: 10.6084/m9.figshare.10027043
title: MOESM9 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production

description: Additional file 9: Table S3. Differentially expressed miRNA species and their targets in wild-type ‘Angeleno’ and in PpeIFiso4G11-silenced transgenic line. 1 Treatment refers to the non-infected (NI) to infected, with either PPV-M or PPV-D, status of the plants. 2 Genotype refers either to wild-type, non-transformed plum (‘Angeleno’ NT) or to AG7303–96 transgenic plants (named here ‘PpeIFiso4G11-silenced’). Total normalized reads were calculated dividing the number of total reads of a specific molecule by the total number of reads in the library. Expectation for target genes were obtained from the pSRNA software [51]. The NCBI link allows to retrieve the identity and true/putative function of each target protein. A) The most differentially expressed miRNA species in Prunus salicina ‘Angeleno’ wild-type (non-transgenic) plants. B) The most differentially expressed miRNA species in Prunus salicina ‘Angeleno’ PpeIFiso4G11-silenced plants. C) miRNA species uniquely expressed either in Prunus salicina ‘Angeleno’ wild-type or PpeIFiso4G11-silenced plants.
DOI: 10.6084/m9.figshare.10027049.v1
title: MOESM4 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 4. BUGSnet league table obtained from the R code in Additional file 2.
DOI: 10.6084/m9.figshare.10027037
title: MOESM8 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production

description: Additional file 8: Table S2. Stem-loop reverse transcription-polymerase chain reaction (RT-PCR) detection of selected siRNAs and miRNAs. * Number indicates the number of reads issued from NGS for each siRNA molecule as depicted in Fig. 3. Loop primer: lower case fonts indicate complementary residues in the loop; bold, italic upper case indicate hybridizing sites for the reverse primer; double underlined fonts, residues hybridizing with the small RNA. Forward primer: double underlined fonts indicate residues hybridizing with the small RNA. wt: non-transformed, wild type ‘Angeleno’; AG7303–96: PpeIFiso4G11-silenced, transgenic ‘Angeleno’ Japanese plants.
DOI: 10.6084/m9.figshare.10027040
title: MOESM2 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 2. R code to compare BUGSnet with GeMTC for the analysis of the diabetes data.
DOI: 10.6084/m9.figshare.10027046.v1
title: MOESM3 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 3. Diabetes dataset to accompany the R code in Additional file 2.
DOI: 10.6084/m9.figshare.10027052.v1
title: MOESM5 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 5. GeMTC league table obtained from the R code in Additional file 2.
DOI: 10.6084/m9.figshare.10027031
title: MOESM7 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production

description: Additional file 7: Table S1. Summary of Japanese plum transformation and resistance testing. 1 Number of Prunus salicina explants treated with Agrobacterium tumefaciens. The constructs are corresponding to the ones depicted in Fig. 1a, except pBINPLUS/ARS-PpeiFiso4E for which we could not regenerate viable, transgenic clones.
DOI: 10.6084/m9.figshare.10027034
title: MOESM1 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 1. Vignette on network meta-analysis of survival data. A vignette detailing how to obtain the outputs in the Results section using BUGSnet version 1.0.2. The vignette includes all the necessary R code as well as additional outputs and explanations that were not presented in this manuscript for the sake of brevity.
DOI: 10.6084/m9.figshare.10027040.v1
title: MOESM2 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 2. R code to compare BUGSnet with GeMTC for the analysis of the diabetes data.
DOI: 10.6084/m9.figshare.10027043.v1
title: MOESM9 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production

description: Additional file 9: Table S3. Differentially expressed miRNA species and their targets in wild-type ‘Angeleno’ and in PpeIFiso4G11-silenced transgenic line. 1 Treatment refers to the non-infected (NI) to infected, with either PPV-M or PPV-D, status of the plants. 2 Genotype refers either to wild-type, non-transformed plum (‘Angeleno’ NT) or to AG7303–96 transgenic plants (named here ‘PpeIFiso4G11-silenced’). Total normalized reads were calculated dividing the number of total reads of a specific molecule by the total number of reads in the library. Expectation for target genes were obtained from the pSRNA software [51]. The NCBI link allows to retrieve the identity and true/putative function of each target protein. A) The most differentially expressed miRNA species in Prunus salicina ‘Angeleno’ wild-type (non-transgenic) plants. B) The most differentially expressed miRNA species in Prunus salicina ‘Angeleno’ PpeIFiso4G11-silenced plants. C) miRNA species uniquely expressed either in Prunus salicina ‘Angeleno’ wild-type or PpeIFiso4G11-silenced plants.
DOI: 10.6084/m9.figshare.10027034.v1
title: MOESM1 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 1. Vignette on network meta-analysis of survival data. A vignette detailing how to obtain the outputs in the Results section using BUGSnet version 1.0.2. The vignette includes all the necessary R code as well as additional outputs and explanations that were not presented in this manuscript for the sake of brevity.
DOI: 10.6084/m9.figshare.10027037.v1
title: MOESM8 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production

description: Additional file 8: Table S2. Stem-loop reverse transcription-polymerase chain reaction (RT-PCR) detection of selected siRNAs and miRNAs. * Number indicates the number of reads issued from NGS for each siRNA molecule as depicted in Fig. 3. Loop primer: lower case fonts indicate complementary residues in the loop; bold, italic upper case indicate hybridizing sites for the reverse primer; double underlined fonts, residues hybridizing with the small RNA. Forward primer: double underlined fonts indicate residues hybridizing with the small RNA. wt: non-transformed, wild type ‘Angeleno’; AG7303–96: PpeIFiso4G11-silenced, transgenic ‘Angeleno’ Japanese plants.
DOI: 10.6084/m9.figshare.10027031.v1
title: MOESM7 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production

description: Additional file 7: Table S1. Summary of Japanese plum transformation and resistance testing. 1 Number of Prunus salicina explants treated with Agrobacterium tumefaciens. The constructs are corresponding to the ones depicted in Fig. 1a, except pBINPLUS/ARS-PpeiFiso4E for which we could not regenerate viable, transgenic clones.
DOI: 10.6084/m9.figshare.10026983
title: MOESM10 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production

description: Additional file 10: Table S4. List of primers used for the production of RNAi constructs, the verification of transgenic lines and the estimation of relative expression analysis. 1 In italics, sequences of the restriction sites used for cloning of the RNAi silencing constructs. 2 Fragment size without the restriction sites added in the primers.
DOI: 10.6084/m9.figshare.10026983.v1
title: MOESM10 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production

description: Additional file 10: Table S4. List of primers used for the production of RNAi constructs, the verification of transgenic lines and the estimation of relative expression analysis. 1 In italics, sequences of the restriction sites used for cloning of the RNAi silencing constructs. 2 Fragment size without the restriction sites added in the primers.
DOI: 10.6084/m9.figshare.10026923
title: vContact2 output

description: Output files of vContact2 (v 0.9.1b)
DOI: 10.6084/m9.figshare.10026896
title: Uloborus_Pholcus_hexan.xlsx

description: Dataset used for studying the protective mechanism of <i>Pholcus phalangioides </i>and <i>Uloborus plumipes</i> against the adhesion of cribellar capture threads. For this study we washed dissected legs of both species with n-hexane, water or left them untreated and then compared indirectly the force needed to detach the leg from a cribellar thread, spun by <i>U. plumipes</i>, among the different treatments. We did so by applying a leg to a cribellar capture thread, then pulling the leg off the thread while filming with a high speed camera. The bending distance of the thread to the point where it detached from the leg was need as indirect measurement for the force of adhesion.Explanation of header:<b>nr:</b> number of measurementtreatment: u = untreated, h = washed with n-hexane, w = washed with water.<b>frames:</b> number of frames recorded by the high speed camera until the leg detached from the thread. Frames per second = 500, pull-off velocity = 20mm/s, acceleration = 6 m/s2.<b>ind: </b>individual spiders, from each individual 3 legs were used<b>leg:</b> position of leg on the animal. In <i>P. phalangioides</i> we used both front legs (leg 1) and one second leg (leg 2), in <i>U. plumipes </i> both hind legs (leg 4) and one second leg (leg 2) was used.<b>web: </b>each web, spun by <i>U. plumipes, </i>was used for 3 measurements. Legs of web-producers were never tested in their own web.<b>thread: </b>the order, in which the threads were cut out of the web. This is stated because the web might loose tension during the process of cutting out threads and therefore thread 1 might have a different tension than thread 3.<b>mm: </b>distance where the leg detached from the thread. This is calculated by multiplying the number of frames by the pull-off velocity (20mm/s) and dividing it by the frame-rate (500 FPS).<b>species: </b>either <i>Pholcus phalangioides </i>or <i>Uloborus plumipes</i> was used.<br>
DOI: 10.6084/m9.figshare.10026923.v1
title: vContact2 output

description: Output files of vContact2 (v 0.9.1b)
DOI: 10.6084/m9.figshare.10026896.v1
title: Uloborus_Pholcus_hexan.xlsx

description: Dataset used for studying the protective mechanism of <i>Pholcus phalangioides </i>and <i>Uloborus plumipes</i> against the adhesion of cribellar capture threads. For this study we washed dissected legs of both species with n-hexane, water or left them untreated and then compared indirectly the force needed to detach the leg from a cribellar thread, spun by <i>U. plumipes</i>, among the different treatments. We did so by applying a leg to a cribellar capture thread, then pulling the leg off the thread while filming with a high speed camera. The bending distance of the thread to the point where it detached from the leg was need as indirect measurement for the force of adhesion.Explanation of header:<b>nr:</b> number of measurementtreatment: u = untreated, h = washed with n-hexane, w = washed with water.<b>frames:</b> number of frames recorded by the high speed camera until the leg detached from the thread. Frames per second = 500, pull-off velocity = 20mm/s, acceleration = 6 m/s2.<b>ind: </b>individual spiders, from each individual 3 legs were used<b>leg:</b> position of leg on the animal. In <i>P. phalangioides</i> we used both front legs (leg 1) and one second leg (leg 2), in <i>U. plumipes </i> both hind legs (leg 4) and one second leg (leg 2) was used.<b>web: </b>each web, spun by <i>U. plumipes, </i>was used for 3 measurements. Legs of web-producers were never tested in their own web.<b>thread: </b>the order, in which the threads were cut out of the web. This is stated because the web might loose tension during the process of cutting out threads and therefore thread 1 might have a different tension than thread 3.<b>mm: </b>distance where the leg detached from the thread. This is calculated by multiplying the number of frames by the pull-off velocity (20mm/s) and dividing it by the frame-rate (500 FPS).<b>species: </b>either <i>Pholcus phalangioides </i>or <i>Uloborus plumipes</i> was used.<br>
DOI: 10.6084/m9.figshare.10026905.v1
title: DATA for 'Study on Vertical Stability of CRTS Ⅱ Slab Track under Temperature Rising Load'.xlsx

description: The results obtained by the formula in the article are iteratively calculated by the programming software.
DOI: 10.6084/m9.figshare.10026722
title: Data from: Diversity of pollen sources used by managed honeybees in variegated landscapes

description: <b>Supporting Raw Data</b> This excel contains supporting raw data for the manuscript, including: Sequence ID, collector information, date of pollen collection, Location of apiary, source of pollen<br> <b>DNA Data</b> This file contains the DNA sequence data to support the manuscript. The key for the pollen samples, including apiary location is contained in the raw data excel spreadsheet.From: Annalie Melin, Jonathan F Colville, Gregory D Duckworth, Res Altwegg, Ruhan Slabbert, Jeremy J Midgley, Mathieu Rouget & John S Donaldson (2020) Diversity of pollen sources used by managed honey bees in variegated landscapes, Journal of Apicultural Research, DOI: 10.1080/00218839.2020.1750757<br>
DOI: 10.6084/m9.figshare.10026728
title: Supplementary Material for: The Impact of the New ICD-11 Criteria on Abused Young People: 30% Less PTSD and CPTSD Diagnoses Compared to DSM-IV

description: Medicine
DOI: 10.6084/m9.figshare.10026722.v1
title: Data from: Diversity of pollen sources used by managed honeybees in variegated landscapes

description: <b>Supporting Raw Data</b> This excel contains supporting raw data for the manuscript, including: Sequence ID, collector information, date of pollen collection, Location of apiary, source of pollen<br> <b>DNA Data</b> This file contains the DNA sequence data to support the manuscript. The key for the pollen samples, including apiary location is contained in the raw data excel spreadsheet.From: Annalie Melin, Jonathan F Colville, Gregory D Duckworth, Res Altwegg, Ruhan Slabbert, Jeremy J Midgley, Mathieu Rouget & John S Donaldson (2020) Diversity of pollen sources used by managed honey bees in variegated landscapes, Journal of Apicultural Research, DOI: 10.1080/00218839.2020.1750757<br>