cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8112759
title: Pre-CSRM: An uppermost mantle seismic Pn-velocity in continental China

description: The uppermost mantle seismic Pn-velocity model is inverted from a new tomographic scheme integrating a combined dataset of 32,427 absolute Pn travel times and 62,431 interstation Pn differential travel times (Ma et al., 2023). The model has spatial resolutions of 0.75° × 0.75°–1° × 1° in the north-south seismic belt and 1.5° × 1.5°–3° × 3° in other regions. The combined Pn travel time dataset used for the inversion of the model is selected from <strong>95,878 </strong>Pn travel times manually picked from the recordings of <strong>3,446 </strong>seismic stations deployed in and around continental China for a total of <strong>6,787 </strong>seismic events between 1992 and 2020. Please click on the <strong>link</strong> to download the dataset. 中国大陆区域上地幔顶部Pn速度模型是根据整合了32,427个Pn绝对到时和62,431个台站间Pn相对到时的反演方案反演而来。该模型的空间分辨率在南北地震带为0.75°×0.75°-1°×1°,在其他地区为1.5°×1.5°-3°×3°。用于模型反演的Pn到时筛选自从部署在中国大陆及其周边地区的<strong>3,446</strong>个地震台站共<strong>6,878</strong>个事件的记录中人工挑选的<strong>95,878</strong>个Pn到时数据库。请点击<strong>链接</strong>下载该数据集。 <strong>Reference</strong>: Ma, J., Sun, L., Wang, W., Wu, J., Wang, X., & Wen, L. (2023). Uppermost mantle seismic <em>Pn</em>-velocity in continental China and its tectonic implications. <em>Journal of Geophysical Research: Solid Earth</em>, 128, e2022JB025667. https://doi.org/10.1029/2022JB025667 If you face any problem or issue when using this model, please feel free to communicate with the corresponding author Jiayu Ma (majy18@mail.ustc.edu.cn or seisbird@gmail.com).
DOI: 10.5281/zenodo.8112758
title: Pre-CSRM: An uppermost mantle seismic Pn-velocity in continental China

description: The uppermost mantle seismic Pn-velocity model is inverted from a new tomographic scheme integrating a combined dataset of 32,427 absolute Pn travel times and 62,431 interstation Pn differential travel times (Ma et al., 2023). The model has spatial resolutions of 0.75° × 0.75°–1° × 1° in the north-south seismic belt and 1.5° × 1.5°–3° × 3° in other regions. The combined Pn travel time dataset used for the inversion of the model is selected from <strong>95,878 </strong>Pn travel times manually picked from the recordings of <strong>3,446 </strong>seismic stations deployed in and around continental China for a total of <strong>6,787 </strong>seismic events between 1992 and 2020. Please click on the <strong>link</strong> to download the dataset. 中国大陆区域上地幔顶部Pn速度模型是根据整合了32,427个Pn绝对到时和62,431个台站间Pn相对到时的反演方案反演而来。该模型的空间分辨率在南北地震带为0.75°×0.75°-1°×1°,在其他地区为1.5°×1.5°-3°×3°。用于模型反演的Pn到时筛选自从部署在中国大陆及其周边地区的<strong>3,446</strong>个地震台站共<strong>6,878</strong>个事件的记录中人工挑选的<strong>95,878</strong>个Pn到时数据库。请点击<strong>链接</strong>下载该数据集。 <strong>Reference</strong>: Ma, J., Sun, L., Wang, W., Wu, J., Wang, X., & Wen, L. (2023). Uppermost mantle seismic <em>Pn</em>-velocity in continental China and its tectonic implications. <em>Journal of Geophysical Research: Solid Earth</em>, 128, e2022JB025667. https://doi.org/10.1029/2022JB025667 If you face any problem or issue when using this model, please feel free to communicate with the corresponding author Jiayu Ma (majy18@mail.ustc.edu.cn or seisbird@gmail.com).
DOI: 10.5439/1987948
title: mmcrmode3ge200511041cloth (c1)

description: mmcrmode3ge200511041cloth
DOI: 10.5439/1987949
title: mmcrmode2ci200511041cloth (c1)

description: mmcrmode2ci200511041cloth
DOI: 10.5439/1987950
title: mmcrmode1bl200511041cloth (c1)

description: mmcrmode1bl200511041cloth
DOI: 10.5439/1987954
title: noaaaosfitrh (b1)

description: The aerosol observing system (AOS) is the primary platform for in situ aerosol measurements at Earth’s surface. Each AOS has a different complement of instruments, which are selected to ensure the best measurements at each deployment site. The AOS measures aerosol optical properties to better understand how particles interact with solar radiation and influence the Earth's radiation balance. These measurements are useful for calculating parameters used in radiative forcing calculations, such as the aerosol single scattering albedo, asymmetry parameter, mass scattering efficiency, and hygroscopic growth. Measurements made with the AOS form a long-term record at the ARM fixed sites. Shorter measurement records are available from mobile deployments in a wide variety of geographical regions. These measurements are valuable for: identifying long-term changes in aerosol properties identifying atmospheric processes controlling aerosol life cycle and their influence on clouds providing experimental data for developing and testing atmospheric climate models.
DOI: 10.5439/1987955
title: arsclwacrbnd1kollias (c1)

description: arsclwacrbnd1kollias
DOI: 10.5439/1987956
title: wacr (b1)

description: The W-band ARM Cloud Radar (WACR) systems are zenith-pointing Doppler radars that probe the extent and composition of clouds at 95.04 GHz. The main purpose of this radar is to determine cloud boundaries (e.g., cloud bottoms and tops). This radar reports estimates for the first three spectra moments for each range gate up to 15 km. The 0th moment is reflectivity, the 1st moment is radial velocity, and the 2nd moment is spectral width. Also available are the raw spectra files. Unlike the millimeter wavelength cloud radar (MMCR), the WACR does not use pulse coding and operates in only copolarization and cross-polarization modes.
DOI: 10.57967/hf/0854
title: cscomm
DOI: 10.6084/m9.figshare.23624658
title: Integrated analysis of copy number variation-associated lncRNAs identifies candidates contributing to the etiologies of congenital kidney anomalies

description: Congenital anomalies of the kidney and urinary tract (CAKUT) are disorders resulting from defects in the development of the kidneys and their outflow tract. Copy number variations (CNVs) have been identified as important genetic variations leading to CAKUT, whereas most CAKUT-associated CNVs cannot be attributed to a specific pathogenic gene. Here we construct coexpression networks involving long noncoding RNAs (lncRNAs) within these CNVs (CNV-lncRNAs) using human kidney developmental transcriptomic data. The results show that CNV-lncRNAs encompassed in recurrent CAKUT associated CNVs have highly correlated expression with CAKUT genes in the developing kidneys. The regulatory effects of two hub CNV-lncRNAs (<em>HSALNG0134318</em> in 22q11.2 and <em>HSALNG0115943</em> in 17q12) in the module most significantly enriched in known CAKUT genes (CAKUT_sig1, <em>P </em>= 1.150×10<sup>-6</sup>) are validated experimentally. Our results indicate that the reduction of CNV-lncRNAs can downregulate CAKUT genes as predicted by our computational analyses. Furthermore, knockdown of <em>HSALNG0134318 </em>would downregulate <em>HSALNG0115943</em> and affect kidney development related pathways. The results also indicate that the CAKUT_sig1 module has function significance involving multi-organ development. Overall, our findings suggest that CNV-lncRNAs play roles in regulating CAKUT genes, and the etiologies of CAKUT-associated CNVs should take account of effects on the noncoding genome.
DOI: 10.6084/m9.figshare.23624658.v1
title: Integrated analysis of copy number variation-associated lncRNAs identifies candidates contributing to the etiologies of congenital kidney anomalies

description: Congenital anomalies of the kidney and urinary tract (CAKUT) are disorders resulting from defects in the development of the kidneys and their outflow tract. Copy number variations (CNVs) have been identified as important genetic variations leading to CAKUT, whereas most CAKUT-associated CNVs cannot be attributed to a specific pathogenic gene. Here we construct coexpression networks involving long noncoding RNAs (lncRNAs) within these CNVs (CNV-lncRNAs) using human kidney developmental transcriptomic data. The results show that CNV-lncRNAs encompassed in recurrent CAKUT associated CNVs have highly correlated expression with CAKUT genes in the developing kidneys. The regulatory effects of two hub CNV-lncRNAs (<em>HSALNG0134318</em> in 22q11.2 and <em>HSALNG0115943</em> in 17q12) in the module most significantly enriched in known CAKUT genes (CAKUT_sig1, <em>P </em>= 1.150×10<sup>-6</sup>) are validated experimentally. Our results indicate that the reduction of CNV-lncRNAs can downregulate CAKUT genes as predicted by our computational analyses. Furthermore, knockdown of <em>HSALNG0134318 </em>would downregulate <em>HSALNG0115943</em> and affect kidney development related pathways. The results also indicate that the CAKUT_sig1 module has function significance involving multi-organ development. Overall, our findings suggest that CNV-lncRNAs play roles in regulating CAKUT genes, and the etiologies of CAKUT-associated CNVs should take account of effects on the noncoding genome.
DOI: 10.6084/m9.figshare.23624658.v2
title: Integrated analysis of copy number variation-associated lncRNAs identifies candidates contributing to the etiologies of congenital kidney anomalies

description: Congenital anomalies of the kidney and urinary tract (CAKUT) are disorders resulting from defects in the development of the kidneys and their outflow tract. Copy number variations (CNVs) have been identified as important genetic variations leading to CAKUT, whereas most CAKUT-associated CNVs cannot be attributed to a specific pathogenic gene. Here we construct coexpression networks involving long noncoding RNAs (lncRNAs) within these CNVs (CNV-lncRNAs) using human kidney developmental transcriptomic data. The results show that CNV-lncRNAs encompassed in recurrent CAKUT associated CNVs have highly correlated expression with CAKUT genes in the developing kidneys. The regulatory effects of two hub CNV-lncRNAs (<em>HSALNG0134318</em> in 22q11.2 and <em>HSALNG0115943</em> in 17q12) in the module most significantly enriched in known CAKUT genes (CAKUT_sig1, <em>P </em>= 1.150×10<sup>-6</sup>) are validated experimentally. Our results indicate that the reduction of CNV-lncRNAs can downregulate CAKUT genes as predicted by our computational analyses. Furthermore, knockdown of <em>HSALNG0134318 </em>would downregulate <em>HSALNG0115943</em> and affect kidney development related pathways. The results also indicate that the CAKUT_sig1 module has function significance involving multi-organ development. Overall, our findings suggest that CNV-lncRNAs play roles in regulating CAKUT genes, and the etiologies of CAKUT-associated CNVs should take account of effects on the noncoding genome.
DOI: 10.6084/m9.figshare.20365548.v1
title: Dataset for the crust and mantle gravity disturbances and their implications

description: The mantle gravity anomalies reflect density perturbations of the mantle, which provides valuable constraints on the physical state and dynamics of the lithosphere and sub-lithospheric mantle. However, the gravitational signals of the crust layers mask the signals of the underlying mantle. In this study, we develop two different frameworks in the spatial domain for the forward calculation of the gravity anomalies generated by the layered crust. Subsequently, we apply the proposed approaches to evaluate the global mantle gravity disturbances based on the recent sedimentary and Moho depth models.
DOI: 10.6084/m9.figshare.20365548.v2
title: Dataset and codes for <strong>The global crust and mantle gravity disturbances and their implications on mantle structure and dynamics</strong>

description: The mantle gravity anomalies reflect density perturbations of the mantle, which provides valuable constraints on the physical state and dynamics of the lithosphere and sub-lithospheric mantle. However, the gravitational signals of the crust layers mask the signals of the underlying mantle. In this study, we develop two different frameworks in the spatial domain for the forward calculation of the gravity anomalies generated by the layered crust. Subsequently, we apply the proposed approaches to evaluate the global mantle gravity disturbances based on the recent sedimentary and Moho depth models.
DOI: 10.6084/m9.figshare.20365548
title: Dataset and codes for the manuscript: The global crust and mantle gravity disturbances and their implications on mantle structure and dynamics

description: The mantle gravity anomalies reflect density perturbations of the mantle, which provides valuable constraints on the physical state and dynamics of the lithosphere and sub-lithospheric mantle. However, the gravitational signals of the crust layers mask the signals of the underlying mantle. In this study, we develop two different frameworks in the spatial domain for the forward calculation of the gravity anomalies generated by the layered crust. Subsequently, we apply the proposed approaches to evaluate the global mantle gravity disturbances based on the recent sedimentary and Moho depth models.
DOI: 10.6084/m9.figshare.20365548.v3
title: Dataset and codes for the manuscript: The global crust and mantle gravity disturbances and their implications on mantle structure and dynamics

description: The mantle gravity anomalies reflect density perturbations of the mantle, which provides valuable constraints on the physical state and dynamics of the lithosphere and sub-lithospheric mantle. However, the gravitational signals of the crust layers mask the signals of the underlying mantle. In this study, we develop two different frameworks in the spatial domain for the forward calculation of the gravity anomalies generated by the layered crust. Subsequently, we apply the proposed approaches to evaluate the global mantle gravity disturbances based on the recent sedimentary and Moho depth models.
DOI: 10.6084/m9.figshare.20365548.v4
title: Dataset and codes for the manuscript: The global crust and mantle gravity disturbances and their implications on mantle structure and dynamics

description: The mantle gravity anomalies reflect density perturbations of the mantle, which provides valuable constraints on the physical state and dynamics of the lithosphere and sub-lithospheric mantle. However, the gravitational signals of the crust layers mask the signals of the underlying mantle. In this study, we develop two different frameworks in the spatial domain for the forward calculation of the gravity anomalies generated by the layered crust. Subsequently, we apply the proposed approaches to evaluate the global mantle gravity disturbances based on the recent sedimentary and Moho depth models.
DOI: 10.5281/zenodo.8111919
title: Data associated with CO2 simulation in YRD region

description: CO2 observation data can also be accessible by contacting the other authors Chong Wei (weic@sari.ac.cn), Wei Wang (wwang@aiofm.ac.cn), and Qianli Ma (wingedsteed@me.com).
DOI: 10.34740/kaggle/dsv/6080512
title: Cartoonify  Image Data
DOI: 10.5281/zenodo.8111918
title: Data associated with CO2 simulation in YRD region

description: CO2 observation data can also be accessible by contacting the other authors Chong Wei (weic@sari.ac.cn), Wei Wang (wwang@aiofm.ac.cn), and Qianli Ma (wingedsteed@me.com).
DOI: 10.5281/zenodo.7645167
title: GNSS position time series (.neu files) and seismic velocity strcture (Profil_lat2822_Vp_Vs.dat) used in the manuscript

description: These are the raw GNSS time series files (in .neu format) and seismic velocity strcture file (Profil_lat2822_Vp_Vs.dat) we used in the manuscript. These data are not allowed to use before the manuscript is accepted.
DOI: 10.5281/zenodo.7278688
title: GNSS position time series (.neu files) and seismic velocity strcture (Profil_lat2822_Vp_Vs.dat) used in the manuscript

description: These are the raw GNSS time series files (in .neu format) and seismic velocity strcture file (Profil_lat2822_Vp_Vs.dat) we used in the manuscript. These data are not allowed to use before the manuscript is accepted.
DOI: 10.25919/reb3-j116
title: Parkes observations for project P1185 semester 2023APRS_08

description: Ultra-long period neutron stars (ULPNSs) are an emerging class of objects that have sparked interest and curiosity in the fast transient community. Along with standard magnetars, they have been theorised to be potential progenitors of the enigmatic fast radio bursts (FRBs). The MeerTRAP project at the MeerKAT radio telescope is uncovering several magnetar and ultra-long period neutron star candidates, an example of which is PSR J0901-4046 with a period of 76s. Continued long-term monitoring of PSR J0901-4046 has shown it to be potentially transitioning into radio quiescence. The proposed observations will enable us to continue to monitor and characterise the decline in flux density. We have also discovered two new candidates MTP0027 and MTP0068 with periods of ~10 seconds and ~5 seconds respectively. Both sources exhibit magnetar-like pulse morphology and have only been detected in one epoch with MeerKAT. We propose to continue monitoring these sources to re-detect pulses and study their spectro-temporal-polarimetric properties.
DOI: 10.5281/zenodo.8003848
title: Fine-Grained Human Feedback Gives Better Rewards for Language Model Training

description: QA-Feedback used in the paper: Fine-Grained Human Feedback Gives Better Rewards for Language Model Training
DOI: 10.5281/zenodo.8003849
title: Fine-Grained Human Feedback Gives Better Rewards for Language Model Training

description: QA-Feedback used in the paper: Fine-Grained Human Feedback Gives Better Rewards for Language Model Training
DOI: 10.5281/zenodo.8115396
title: Fine-Grained Human Feedback Gives Better Rewards for Language Model Training

description: QA-Feedback used in the paper: Fine-Grained Human Feedback Gives Better Rewards for Language Model Training
DOI: 10.6084/m9.figshare.22146638
title: Data for macaque project "Ex utero monkey embryogenesis from blastocyst to early organogenesis"

description: Data for macaque project "Ex utero monkey embryogenesis from blastocyst to early organogenesis"
DOI: 10.6084/m9.figshare.22146638.v1
title: Data for macaque project "Ex utero monkey embryogenesis from blastocyst to early organogenesis"

description: Data for macaque project "Ex utero monkey embryogenesis from blastocyst to early organogenesis"
DOI: 10.5281/zenodo.8115401
title: Interpretation of the North-South Asymmetric Oxygen Aurora Morphology on Europa Using Test Particle Simulation

description: This dataset contains the simulation codes and results used for figures in the paper "Interpretation of the North-South Asymmetric Oxygen Aurora Morphology on Europa Using Test Particle Simulation" submitted to Journal of Geophysical Research: Space Physics. Detailed information about the dataset can be found in "README.txt".
DOI: 10.5281/zenodo.8115400
title: Interpretation of the North-South Asymmetric Oxygen Aurora Morphology on Europa Using Test Particle Simulation

description: This dataset contains the simulation codes and results used for figures in the paper "Interpretation of the North-South Asymmetric Oxygen Aurora Morphology on Europa Using Test Particle Simulation" submitted to Journal of Geophysical Research: Space Physics. Detailed information about the dataset can be found in "README.txt".
DOI: 10.5281/zenodo.8115386
title: Recent Increases in Tropical Cyclone Rapid Intensification Events in Global Offshore Regions

description: The data and scripts in this repository can be used to support the main conclusion in the manuscript "Recent Increases in Tropical Cyclone Rapid Intensification Events in Global Offshore Regions" by Li et al., submitted to Nature Communications. The global distribution and annual variability of rapid intensification (RI) events of tropical cyclones (TCs) dervied from the open-source International Best Track Archive for Climate Stewardship (IBTrACS, https://www.ncei.noaa.gov/products/international-best-track-archive) are provided. The enviromental variables, including mid-level (600 hPa), vertical wind shear (200-850 hPa), and maximum potential intensity (MPI), were also calculated using the fifth generation of ECMWF reanalysis (ERA5) and Coupled Model Intercomparison Project Phase 6 (CMIP6) forced in different scenarios. The python script (coastal_RI_submit ipynb) can be used to reproduce figures in the article.
DOI: 10.5281/zenodo.8115385
title: Recent Increases in Tropical Cyclone Rapid Intensification Events in Global Offshore Regions

description: The data and scripts in this repository can be used to support the main conclusion in the manuscript "Recent Increases in Tropical Cyclone Rapid Intensification Events in Global Offshore Regions" by Li et al., submitted to Nature Communications. The global distribution and annual variability of rapid intensification (RI) events of tropical cyclones (TCs) dervied from the open-source International Best Track Archive for Climate Stewardship (IBTrACS, https://www.ncei.noaa.gov/products/international-best-track-archive) are provided. The enviromental variables, including mid-level (600 hPa), vertical wind shear (200-850 hPa), and maximum potential intensity (MPI), were also calculated using the fifth generation of ECMWF reanalysis (ERA5) and Coupled Model Intercomparison Project Phase 6 (CMIP6) forced in different scenarios. The python script (coastal_RI_submit ipynb) can be used to reproduce figures in the article.
DOI: 10.6084/m9.figshare.22586494
title: Oceanic feedback to ISO over SCS

description: Results of oceanic feedback to the simulated intraseasonal convection over the South China Sea during monsoon season in SP GCMs. The diagnostic package is described in Gao and Hsu (2023). The package contains a set of netCDF files, which could be used to reproduce the figures 7-11 in Gao and Hsu (2023).
DOI: 10.6084/m9.figshare.22586494.v1
title: Oceanic feedback to ISO over SCS

description: Results of oceanic feedback to the simulated intraseasonal convection over the South China Sea during monsoon season in SP GCMs. The diagnostic package is described in Gao and Hsu (2023). The package contains a set of netCDF files, which could be used to reproduce the figures 7-11 in Gao and Hsu (2023).
DOI: 10.6084/m9.figshare.23625327
title: VCF file of 117 M. tuberculosis samples

description: This is the VCF of variants from the 117 M. tuberculosis samples that were used to construct the reference graph for M. tuberculosis in DrPRG
DOI: 10.6084/m9.figshare.23625258
title: Spatiotemporal-Data-and-Query-Test.rar

description: 1) the ‘.idea’ folder contains Python-related environments; 2) the ‘data’ folder includes both simulated and real data used in the experiments; 3) the ‘query’ folder contains relevant querying and database insertion codes; 4) the ‘STRangeFile’ folder is the encoding file used for queries.
DOI: 10.6084/m9.figshare.23625258.v1
title: Spatiotemporal-Data-and-Query-Test.rar

description: 1) the ‘.idea’ folder contains Python-related environments; 2) the ‘data’ folder includes both simulated and real data used in the experiments; 3) the ‘query’ folder contains relevant querying and database insertion codes; 4) the ‘STRangeFile’ folder is the encoding file used for queries.
DOI: 10.6084/m9.figshare.23625371
title: Additional file 1 of Evaluation of the performance of the IFN-γ release assay in bovine tuberculosis free herds from five European countries

description: Additional file 1: Impact of different cut-offs for Bovigam and IDvet in the sensitivity and specificity of the opposite test.
DOI: 10.6084/m9.figshare.23625371.v1
title: Additional file 1 of Evaluation of the performance of the IFN-γ release assay in bovine tuberculosis free herds from five European countries

description: Additional file 1: Impact of different cut-offs for Bovigam and IDvet in the sensitivity and specificity of the opposite test.
DOI: 10.6084/m9.figshare.23625374
title: Additional file 2 of Evaluation of the performance of the IFN-γ release assay in bovine tuberculosis free herds from five European countries

description: Additional file 2: Evolution of the animal-level specificity of the Bovigam and IDvet kit depending on the cut-off point (OD or S/P ratio) used to define positivity, depending on different covariables.