cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19613698.v1
title: Additional file 15 of An alternative CYB5A transcript is expressed in aneuploid ALL and enriched in relapse

description: Additional file 15. Genetic alterations in relapsed NH/HeH BCP-ALL patients (n = 10). The table summarises the number of genetic events occurring in NH/HeH BCP-ALL patients (n = 10) in cohort 1 as assessed by Exonseq and gene panel sequencing. Sheet 1 (summary) summarises recurrent genetic alterations (count &gt; 1), subdivided into gene mutations (mutational count, detected by Exonseq and panel sequencing) and copy number alterations (CNA count, Exonseq). Sheet 2 (mutations) and sheet 3 (can) list all detected genetic alterations in relapsed NH / HeH BCP-ALL patients.
DOI: 10.6084/m9.figshare.19613707
title: Additional file 1 of An alternative CYB5A transcript is expressed in aneuploid ALL and enriched in relapse

description: Additional file 1. Summary table cohort 1. This table lists basic clinical characteristics (e.g. age at ID, time to REL, sex, bone marrow blast count), molecular subgroups and the status of CYB5Aalt for each sample of the exploratory cohort. Further, it indicates which samples had sufficient RNA to detect gene fusions and alternative transcripts, referred to as cohort 1 (n = 86), and passed the quality check for gene expression analysis.
DOI: 10.6084/m9.figshare.19613707.v1
title: Additional file 1 of An alternative CYB5A transcript is expressed in aneuploid ALL and enriched in relapse

description: Additional file 1. Summary table cohort 1. This table lists basic clinical characteristics (e.g. age at ID, time to REL, sex, bone marrow blast count), molecular subgroups and the status of CYB5Aalt for each sample of the exploratory cohort. Further, it indicates which samples had sufficient RNA to detect gene fusions and alternative transcripts, referred to as cohort 1 (n = 86), and passed the quality check for gene expression analysis.
DOI: 10.6084/m9.figshare.19613710
title: Additional file 2 of An alternative CYB5A transcript is expressed in aneuploid ALL and enriched in relapse

description: Additional file 2. Summary table cohort 2. This table lists available basic clinical characteristics (age at ID, sex), molecular subgroup annotation and occurrence of CYB5Aalt for each sample of the validation cohort (cohort 2, n = 140). The table also shows which samples were used for detection of gene fusions (including CYB5Aalt) and were used for gene expression analysis.
DOI: 10.6084/m9.figshare.19613710.v1
title: Additional file 2 of An alternative CYB5A transcript is expressed in aneuploid ALL and enriched in relapse

description: Additional file 2. Summary table cohort 2. This table lists available basic clinical characteristics (age at ID, sex), molecular subgroup annotation and occurrence of CYB5Aalt for each sample of the validation cohort (cohort 2, n = 140). The table also shows which samples were used for detection of gene fusions (including CYB5Aalt) and were used for gene expression analysis.
DOI: 10.6084/m9.figshare.19613719
title: Additional file 5 of An alternative CYB5A transcript is expressed in aneuploid ALL and enriched in relapse

description: Additional file 5. Virtual Karyotypes of cohort 1. Virtual karyotypes are displayed as a table. The table displays gross copy number fold changes from diploid samples and loss of heterozygosity (LOH), if whole chromosomes or major parts of a chromosome arm were affected. ICSN nomenclature has not been used, as e.g. translocations were inferred from RNAseq data but not analyzed for the construction of virtual karyotypes.
DOI: 10.6084/m9.figshare.19613719.v1
title: Additional file 5 of An alternative CYB5A transcript is expressed in aneuploid ALL and enriched in relapse

description: Additional file 5. Virtual Karyotypes of cohort 1. Virtual karyotypes are displayed as a table. The table displays gross copy number fold changes from diploid samples and loss of heterozygosity (LOH), if whole chromosomes or major parts of a chromosome arm were affected. ICSN nomenclature has not been used, as e.g. translocations were inferred from RNAseq data but not analyzed for the construction of virtual karyotypes.
DOI: 10.6084/m9.figshare.19613822.v1
title: Additional file 3 of YqeH contributes to avian pathogenic Escherichia coli pathogenicity by regulating motility, biofilm formation, and virulence

description: Additional file 3: Differentially expressed genes data.
DOI: 10.6084/m9.figshare.19613830.v1
title: Additional file 1 of A systematic review of the literature on the impact of the Seguro Popular

description: Additional file 1. Specialist Unit for Review of Evidence (SURE) that evaluates the quality of 11 key features for each of the 26 selected papers that evaluated the Seguro Popular.
DOI: 10.6084/m9.figshare.19613836.v1
title: Additional file 3 of A systematic review of the literature on the impact of the Seguro Popular

description: Additional file 3. Specific results by outcome/paper from the 26 papers that evaluated the Seguro Popular.
DOI: 10.6084/m9.figshare.19613782.v1
title: Additional file 1 of Ethnomedicinal landscape: distribution of used medicinal plant species in Nepal

description: Additional file 1. Data table of geography, demography, ethnicity, and used medicinal plants by district
DOI: 10.5281/zenodo.6469302
title: observed dataset and FVCOM-ERSEM modeling result of environmental factors and Chl-a concentration in CRE

description: This data set is mainly used in the article "Formation and Breakdown of an Offshore Summer Cold-Water Zone and Its Ecological Effect on Phytoplankton". "2013-2018 data" was the dataset of obversed data in the Changjiang River Esturary (CRE) during the summer of 2013-2018. And the "cje1v_avg_2015.zip" was the result of three-dimensional physical-biogeochemical coupled model(FVCOM-ERSEM).
DOI: 10.5281/zenodo.6469301
title: observed dataset and FVCOM-ERSEM modeling result of environmental factors and Chl-a concentration in CRE

description: This data set is mainly used in the article "Formation and Breakdown of an Offshore Summer Cold-Water Zone and Its Ecological Effect on Phytoplankton". "2013-2018 data" was the dataset of obversed data in the Changjiang River Esturary (CRE) during the summer of 2013-2018. And the "cje1v_avg_2015.zip" was the result of three-dimensional physical-biogeochemical coupled model(FVCOM-ERSEM).
DOI: 10.6084/m9.figshare.19613752.v1
title: Additional file 2 of Identifying molecular mediators of the relationship between body mass index and endometrial cancer risk: a Mendelian randomization analysis

description: Additional file 2: Table S5. Information on genetic variants included as instruments for traits.
DOI: 10.6084/m9.figshare.19613743.v1
title: Additional file 2 of Intellectual disability associated with craniofacial dysmorphism due to POLR3B mutation and defect in spliceosomal machinery

description: Additional file 2. Supplementary Table 2. Details of the hub genes.
DOI: 10.6084/m9.figshare.19613740.v1
title: Additional file 1 of Intellectual disability associated with craniofacial dysmorphism due to POLR3B mutation and defect in spliceosomal machinery

description: Additional file 1. Supplementary Table 1. Dysregulated genes in POLR3B mutants patients.
DOI: 10.21942/uva.16610143.v1
title: arXiv:2012.07605 Raw and analyzed data, analysis tools, etc

description: Raw data, analysis tools and other usefull information from arXiv:2012.07605
DOI: 10.21942/uva.16610143
title: arXiv:2012.07605 Raw and analyzed data, analysis tools, etc

description: Raw data, analysis tools and other usefull information from arXiv:2012.07605
DOI: 10.18112/openneuro.ds004102.v1.0.0
title: Stimulation of the dorsolateral prefrontsal cortex modulates brain cue reactivity to reward(un)availability
DOI: 10.6084/m9.figshare.19613880
title: Table 2.docx

description: Mutation list of 39 SARS-CoV-2 genomes collected during 3rd wave of COVID-19 Pandemic in Bangladesh
DOI: 10.6084/m9.figshare.19613889
title: Atmosfera USM Muka Head Dataset

description: The data comprise the eddy covariance and biometeorology parameters collected at the Muka Head Station, Centre for Marine and Coastal Studies (CEMACS), USM, Penang, Malaysia.
DOI: 10.5281/zenodo.6461072
title: FFSVC2022-eval

description: The FFSVC2022-eval is the evaluation set of the FFSVC2022.
DOI: 10.5281/zenodo.6461071
title: FFSVC2022-eval

description: The FFSVC2022-eval is the evaluation set of the FFSVC2022.
DOI: 10.5281/zenodo.6466068
title: FFSVC2022-dev

description: The FFSVC2022-dev is the development set of FFSVC2022.
DOI: 10.5281/zenodo.6466067
title: FFSVC2022-dev

description: The FFSVC2022-dev is the development set of FFSVC2022.
DOI: 10.6084/m9.figshare.12323873.v1
title: Isolation of Cellulose Nanofibers from <i>Oryza sativa</i> Residues via TEMPO Mediated Oxidation

description: Cellulose nanocrystals (CNCs) or cellulose nanofibers (CNFs) with different morphologies, chemical, mechanical and physical properties can be obtained when microcrystalline cellulose is subjected to enzymatic, chemical or mechanical treatment. With the aim of utilizing cellulose nanofibrils (CNFs) from <i>Oryza sativa</i>, we isolated microcrystalline cellulose using the Kraft process, followed by successive fiber fibrillation using mechanical grinding, then (2,2,6,6-Tetramethylpiperidin-1-yl)oxyl (TEMPO) mediated oxidation. Analysis of pulp fibers obtained after each treatment step revealed that fiber properties such as length, crystallinity and crystal size changed when the pulp was subjected to mechanical grinding, ultrasonication and TEMPO mediated oxidation. The degree of crystallinity of the fibers increased while crystal size and fiber length decreased after each treatment. TEMPO mediated oxidation led to a decrease in fiber length and an increase in degree of crystallinity of the fibers as compared to mechanical treatment and ultrasonication. It further introduced carboxyl functional groups (COOH) on the surface of the fibrils, which implies that the nanofibers obtained in this study could be further functionalized. Hence, TEMPO mediated oxidation offers the possibility of further chemical functionalization of cellulose nanofibers isolated from agricultural residues.
DOI: 10.6084/m9.figshare.12323873
title: Isolation of Cellulose Nanofibers from <i>Oryza sativa</i> Residues via TEMPO Mediated Oxidation

description: Cellulose nanocrystals (CNCs) or cellulose nanofibers (CNFs) with different morphologies, chemical, mechanical and physical properties can be obtained when microcrystalline cellulose is subjected to enzymatic, chemical or mechanical treatment. With the aim of utilizing cellulose nanofibrils (CNFs) from <i>Oryza sativa</i>, we isolated microcrystalline cellulose using the Kraft process, followed by successive fiber fibrillation using mechanical grinding, then (2,2,6,6-Tetramethylpiperidin-1-yl)oxyl (TEMPO) mediated oxidation. Analysis of pulp fibers obtained after each treatment step revealed that fiber properties such as length, crystallinity and crystal size changed when the pulp was subjected to mechanical grinding, ultrasonication and TEMPO mediated oxidation. The degree of crystallinity of the fibers increased while crystal size and fiber length decreased after each treatment. TEMPO mediated oxidation led to a decrease in fiber length and an increase in degree of crystallinity of the fibers as compared to mechanical treatment and ultrasonication. It further introduced carboxyl functional groups (COOH) on the surface of the fibrils, which implies that the nanofibers obtained in this study could be further functionalized. Hence, TEMPO mediated oxidation offers the possibility of further chemical functionalization of cellulose nanofibers isolated from agricultural residues.
DOI: 10.6084/m9.figshare.19582636
title: Supplementary Material A and B

description: <strong>SUPPLEMENTARY MATERIAL TO ACCOMPANY:</strong> <strong>ALLERKAMP ET AL.</strong> <strong>Predicting pregnancy specific uterine vascular reactivity: A data driven computational model of shear-dependent, myogenic, and mechanical radial artery features</strong>
DOI: 10.6084/m9.figshare.19613836
title: Additional file 3 of A systematic review of the literature on the impact of the Seguro Popular

description: Additional file 3. Specific results by outcome/paper from the 26 papers that evaluated the Seguro Popular.
DOI: 10.6084/m9.figshare.19613830
title: Additional file 1 of A systematic review of the literature on the impact of the Seguro Popular

description: Additional file 1. Specialist Unit for Review of Evidence (SURE) that evaluates the quality of 11 key features for each of the 26 selected papers that evaluated the Seguro Popular.
DOI: 10.6084/m9.figshare.19613822
title: Additional file 3 of YqeH contributes to avian pathogenic Escherichia coli pathogenicity by regulating motility, biofilm formation, and virulence

description: Additional file 3: Differentially expressed genes data.
DOI: 10.6084/m9.figshare.19613782
title: Additional file 1 of Ethnomedicinal landscape: distribution of used medicinal plant species in Nepal

description: Additional file 1. Data table of geography, demography, ethnicity, and used medicinal plants by district
DOI: 10.6084/m9.figshare.19613752
title: Additional file 2 of Identifying molecular mediators of the relationship between body mass index and endometrial cancer risk: a Mendelian randomization analysis

description: Additional file 2: Table S5. Information on genetic variants included as instruments for traits.
DOI: 10.6084/m9.figshare.19613743
title: Additional file 2 of Intellectual disability associated with craniofacial dysmorphism due to POLR3B mutation and defect in spliceosomal machinery

description: Additional file 2. Supplementary Table 2. Details of the hub genes.
DOI: 10.6084/m9.figshare.19613740
title: Additional file 1 of Intellectual disability associated with craniofacial dysmorphism due to POLR3B mutation and defect in spliceosomal machinery

description: Additional file 1. Supplementary Table 1. Dysregulated genes in POLR3B mutants patients.
DOI: 10.15151/esrf-es-757764161
title: SARS-CoV-2 orf7a and orf8 proteins and their Zn-mediated interaction with BST2

description: The most supported hypothesis for the orf7a function is the interference with virion budding operated by cellular antigens, while the orf8 function is still unknown. We aim at studying the interaction of orf7a and orf8 with the bone marrow stromal antigen 2 (BST2). BST2 dimerization and oligomerization involve intermolecular disulfide bonds between cysteine residues and are strongly influenced by the presence of divalent cations, such as Zn2+. We want to test the hypothesis [7] that the orf7a and orf8 proteins have been selected to counteract BST2 antiviral activity by bringing in situ Zn2+ cations owing to the presence of multiple Zn-finger domains. The formation of orf7a/BST2 and orf8/BST2 complexes assisted by the presence of Zn2+ may enable the virus to evade the antiviral activity of BST2. In this proposal we aim at determining the Zn2+coordination mode in orf7a, orf8 and BST2 to check the possible formation of orf7a/BST2 and orf8/BST2 complexes.
DOI: 10.15151/esrf-es-752395429
title: Microscopic view of the pressure induced magnetically ordered phases in the UTe2 superconductor by U- M4,5 XMCD

description: The aim of the proposal is (i) to quantitatively follow with high accuracy the evolution of the number of uranium 5f electrons in the recently discovered triplet superconductor UTe2 under high pressure using XANES and (ii) to probe the magnetic phase that occurs under pressure using high pressure XMCD at the U M4,5-edges.
DOI: 10.34740/kaggle/dsv/3490360
title: AutoXGB
DOI: 10.6084/m9.figshare.19612941
title: Supplementary Material for: German Guidelines on Screening, Diagnosis, and Treatment of Alcohol Use Disorders: Update 2021

description: <b><i>Introduction:</i></b> Alcohol consumption in Germany is associated with considerable health and economic consequences. In addition to prevention, the early detection and differential treatment of those affected play an important role. The guideline “Screening, Diagnosis, and Treatment of Alcohol Use Disorders” forms the basis of this care for people suffering from alcohol use disorders. Regular updates integrate the current state of research evidence and clinical expertise. <b><i>Methods:</i></b> Under the auspices of the German Society for Psychiatry, Psychotherapy, Psychosomatics, and Neurology and the German Society for Addiction Research and Addiction Therapy e.V. (DG-Sucht), the 2019–2020 S3 guideline on alcohol was revised by eight working groups. Thirty-five professional societies participated in a structured consensus process to deliberate the recommendations. Potential conflicts of interest were examined in advance, documented, and taken into account during the voting on the recommendations. <b><i>Results:</i></b> The guideline provides recommendations on screening and brief interventions for different groups of people, as well as on treatment of individuals in the acute and post-acute phases of withdrawal. Special emphasis was placed on the treatment of comorbid somatic and psychological disorders. In addition, recommendations for specific groups of people (e.g., children and adolescents, pregnant women) have been made and adapted to the German care landscape.
DOI: 10.6084/m9.figshare.19614159
title: Supplementary Material for: Pathways from Diagnosis to Death from Keratinocyte Cancer in Kidney Transplant Recipients

description: <b><i>Background:</i></b> Kidney transplant recipients are at increased risk of developing and dying from keratinocyte cancer. We aimed to describe the clinical course of keratinocyte cancer-related deaths in a cohort of kidney transplant recipients. <b><i>Methods:</i></b> In kidney transplant recipients transplanted between 1995 and 2014 in Queensland, Australia, we ascertained keratinocyte cancer deaths by searching national transplant and state death registries to March 2020. Deceased transplant recipients’ medical records were reviewed to assess features of the primary lesion of the fatal keratinocyte cancer, metastases, and clinical information before death. <b><i>Results:</i></b> Of 658 kidney transplant recipient deaths, 49 (7%) were due to keratinocyte cancer, and medical records were available for 36 (73%). One death was due to basal cell carcinoma, and 35 were from squamous cell carcinoma (SCC), primarily from the head and neck (24; 69%). The most common site of metastasis was the lungs (21; 58%). Median time (minimum, maximum) from the diagnosis of primary SCC to metastasis was 5 months (0, 29). After this, the median time to death was 9 months (1, 50). <b><i>Conclusion:</i></b> Fatal keratinocyte cancers overwhelmingly arise on the head and neck, with lungs the most common metastasis site. The short time from diagnosis of primary to death indicates the aggressive nature of these keratinocyte cancers.
DOI: 10.6084/m9.figshare.19614159.v1
title: Supplementary Material for: Pathways from Diagnosis to Death from Keratinocyte Cancer in Kidney Transplant Recipients

description: <b><i>Background:</i></b> Kidney transplant recipients are at increased risk of developing and dying from keratinocyte cancer. We aimed to describe the clinical course of keratinocyte cancer-related deaths in a cohort of kidney transplant recipients. <b><i>Methods:</i></b> In kidney transplant recipients transplanted between 1995 and 2014 in Queensland, Australia, we ascertained keratinocyte cancer deaths by searching national transplant and state death registries to March 2020. Deceased transplant recipients’ medical records were reviewed to assess features of the primary lesion of the fatal keratinocyte cancer, metastases, and clinical information before death. <b><i>Results:</i></b> Of 658 kidney transplant recipient deaths, 49 (7%) were due to keratinocyte cancer, and medical records were available for 36 (73%). One death was due to basal cell carcinoma, and 35 were from squamous cell carcinoma (SCC), primarily from the head and neck (24; 69%). The most common site of metastasis was the lungs (21; 58%). Median time (minimum, maximum) from the diagnosis of primary SCC to metastasis was 5 months (0, 29). After this, the median time to death was 9 months (1, 50). <b><i>Conclusion:</i></b> Fatal keratinocyte cancers overwhelmingly arise on the head and neck, with lungs the most common metastasis site. The short time from diagnosis of primary to death indicates the aggressive nature of these keratinocyte cancers.
DOI: 10.5281/zenodo.6414673
title: Dataset of handling noise for "Assessing the relevance of perceptually driven objective metrics in the presence of handling noise"

description: This dataset contains the handling noise chunks used in [1] under the<br> folders "tapping" and "rustle" and the csv files used to compute the<br> results in section 5 of [1] under the "csv" folder. These chunks have<br> been extracted from seven in-house recordings and twelve of the sixteen<br> recordings from [2]. The twelve recordings from [2] have first been<br> converted from the .wma to the .wav format and resampled from 44100 Hz<br> to 48000 Hz before the extraction of the chunks. The sample rate of the<br> in-house recordings is natively 48000 Hz. <br> [1] Angonin, C., Chourdakis E. T., and Åeng, R. A. "Assessing the<br> relevance of perceptually driven objective metrics in the presence of<br> handling noise", in 152nd Audio Engineering Society Convention,<br> Netherlands, 2022. [2] Kentric, P. Jackson, I. R., Fazenda, B. M, Cox, T. J., and Li, F. F.<br> "Microphone handling noise: Measurements of perceptual threshold and effects<br> on audio quality." PloS one, 10(10), 2015.
description: {"references": ["Angonin, C., Chourdakis E. T., and \u00c5eng, R. A. \"Assessing the relevance of perceptually driven objective metrics in the presence of handling noise\", in 152nd Audio Engineering Society Convention, Netherlands, 2022.", "Kentric, P. Jackson, I. R., Fazenda, B. M, Cox, T. J., and Li, F. F. \"Microphone handling noise: Measurements of perceptual threshold and effects on audio quality.\" PloS one, 10(10), 2015."]}
DOI: 10.5281/zenodo.6414672
title: Dataset of handling noise for "Assessing the relevance of perceptually driven objective metrics in the presence of handling noise"

description: This dataset contains the handling noise chunks used in [1] under the<br> folders "tapping" and "rustle" and the csv files used to compute the<br> results in section 5 of [1] under the "csv" folder. These chunks have<br> been extracted from seven in-house recordings and twelve of the sixteen<br> recordings from [2]. The twelve recordings from [2] have first been<br> converted from the .wma to the .wav format and resampled from 44100 Hz<br> to 48000 Hz before the extraction of the chunks. The sample rate of the<br> in-house recordings is natively 48000 Hz. <br> [1] Angonin, C., Chourdakis E. T., and Åeng, R. A. "Assessing the<br> relevance of perceptually driven objective metrics in the presence of<br> handling noise", in 152nd Audio Engineering Society Convention,<br> Netherlands, 2022. [2] Kentric, P. Jackson, I. R., Fazenda, B. M, Cox, T. J., and Li, F. F.<br> "Microphone handling noise: Measurements of perceptual threshold and effects<br> on audio quality." PloS one, 10(10), 2015.
description: {"references": ["Angonin, C., Chourdakis E. T., and \u00c5eng, R. A. \"Assessing the relevance of perceptually driven objective metrics in the presence of handling noise\", in 152nd Audio Engineering Society Convention, Netherlands, 2022.", "Kentric, P. Jackson, I. R., Fazenda, B. M, Cox, T. J., and Li, F. F. \"Microphone handling noise: Measurements of perceptual threshold and effects on audio quality.\" PloS one, 10(10), 2015."]}