cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28931030.v5
title: Code for the HIVE Appendicitis prediction modelRepository with LLM_data_extractor_optuna for automated feature extraction

description: This repository contains the code and trained model for developing the HIVE (History, Intake, Vitals, Examination) machine learning model for predicting appendicitis in patients presenting with acute abdominal pain at the Emergency Department (ED).The HIVE model was developed using structured data derived from ED intake forms, vital signs, and clinical signs and symptoms extracted from free-text ED reports. These clinical features were either manually annotated or automatically extracted using a large language model (LLM), depending on the experiment.The codebase includes:Preprocessing scripts for merging structured and unstructured inputsFeature engineering and selection stepsModel development using XGBoostHyperparameter tuning via OptunaEvaluation procedures including AUROC calculation and bootstrapping for confidence intervalsThe repository also includes a pickled version of the final trained model (developed on 268 training cases), which can be used to generate appendicitis risk predictions on new patient data when provided with the appropriate input features.<b>LLM Data Extractor optuna repo</b> is a Python framework for generating and evaluating clinical text predictions using large language models (LLMs) like <code>qwen2.5</code>. It supports:Prediction task execution via a local Ollama serverHyperparameter tuning with Optuna across temperature, top-k, top-p, and min-pDesigned to extract structured outputs from unstructured text data (e.g., ED reports)Fully configurable via CLI for automated or fine-tuned runs.The pipeline supports both direct prediction generation and structured evaluation with minimal setup. It is based on the llm_extractinator/README.md at main · DIAGNijmegen/llm_extractinator · GitHub. This repository is linked to the paper <b><i>LLM-automated extraction of clinical signs and symptoms from Emergency Department reports for machine learning prediction models</i></b>.
DOI: 10.15468/dl.ejxqjb
title: Occurrence Download

description: A dataset containing 1202 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ricania speculum"
 ]
}

 The dataset includes 1202 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000267-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zd7hjm
title: Occurrence Download

description: A dataset containing 55595 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sturnus vulgaris",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55595 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000255-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hq5dzq
title: Occurrence Download

description: A dataset containing 5128 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alyssum granatense"
 ]
}

 The dataset includes 5128 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000268-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zsyxwm
title: Occurrence Download

description: A dataset containing 5221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parthenium hysterophorus",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5221 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000269-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34810/data1780
title: Replication data for: Raw Data from Fecal Microbiota and Hair Glucocorticoid Concentration Show Associations with Growth during Early Life in a Pig Model (PID2020-113604RB-I00 project).

description: Raw data from publication González-Solé et al. Nutrients 2022, 14, 4639. 
The aim of this study was to identify if a differential growth during lactation and/or the nursery period may be associated with fecal microbiota composition and fermentation capacity, as well as to leave a print of glucocorticoid biomarkers in the hair. The dataset provides these values collected in in extreme growth piglets at the end of the nursery period.
70 pigs with slow growth during lactation and 81 pigs with fast growth during lactation were weighed again at the end of nursery period (d62 of life). Then, pigs with slow growth during the nursery period from each subset and also pigs with fast growth during the nursery period were chosen, obtaining four groups as a factorial design. At the end of the nursery period (d63), fecal and hair samples were collected from the
piglets included in the study to analyze cortisol and cortisone in hair, Short-Chain Fatty Acid, and 16S rRNA Gene Sequencing.
description: Excel file, xlsx
DOI: 10.15468/dl.ku72bd
title: Occurrence Download

description: A dataset containing 120424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dracaena hyacinthoides, Tithonia tubaeformis, Argemone subfusiformis, Atriplex nummularia, Bambusa balcooa, Bidens biternata, Cardiospermum halicacabum, Cylindropuntia fulgida, Cylindropuntia imbricata, Dodonaea viscosa)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 120424 records from 789 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000259-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8d7k2
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Harmonia axyridis",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 166 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049791-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fut3s
title: Occurrence Download

description: A dataset containing 7091 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptagonus decagonus"
 ]
}

 The dataset includes 7091 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049789-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aseq89
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium alexandrinum",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 41 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049792-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nejhk
title: Occurrence Download

description: A dataset containing 28335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caprimulgus macrurus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 28335 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049790-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ex9k8u
title: Occurrence Download

description: A dataset containing 1177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caprimulgus mahrattensis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1177 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049794-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ptqpk
title: Occurrence Download

description: A dataset containing 3332 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trochoidea elegans"
 ]
}

 The dataset includes 3332 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049795-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fn83yp
title: Occurrence Download

description: A dataset containing 535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Luxilus pilsbryi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 535 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049796-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fser78
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caprimulgus nubicus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 214 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049797-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9pcf7
title: Occurrence Download

description: A dataset containing 8395 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caprimulgus rufigena)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 8395 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049800-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jjah9
title: Occurrence Download

description: A dataset containing 15952 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caprimulgus ruficollis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 15952 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049799-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gsf5pf
title: Occurrence Download

description: A dataset containing 51569 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lactuca perennis"
 ]
}

 The dataset includes 51569 records from 564 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049718-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nju9yr
title: Occurrence Download

description: A dataset containing 11849 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptoclinus maculatus"
 ]
}

 The dataset includes 11849 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049801-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhh23f
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pimelodus coprophagus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 26 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049802-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5gxzjt
title: Occurrence Download

description: A dataset containing 167768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Harmonia axyridis",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 167768 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049778-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cs95mx
title: Occurrence Download

description: A dataset containing 1894 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caprimulgus vexillarius)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1894 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049803-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4bfrm
title: Occurrence Download

description: A dataset containing 29360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Meconopsis horridula, Melilotus suaveolens, Neotrinia splendens, Papaver somniferum, Primula polyneura, Prunus mandshurica, Ricinus communis, Solanum tuberosum, Sophora davidii, Alcea rosea, Allium cyaneum, Aquilegia oxysepala, Canarium album, Canarium pimela, Catalpa bungei, Choerospondias axillaris, Coix lacryma-jobi, Celosia argentea argentea, Decaisnea insignis, Gymnocladus chinensis, Ipomoea batatas, Iris ensata, Iris ventricosa, Koeleria macrantha, Ligustrum delavayanum, Lilium bakerianum, Lilium brownii, Lilium davidii, Lithocarpus corneus, Melica virgata, Nageia nagi, Primula beesiana, Primula muscarioides, Prunus glandulosa, Prunus japonica, Puccinellia distans, Punica granatum, Pyracantha crenulata, Quercus dentata, Rhamnus davurica)",
 "Year 1898-2024"
 ]
}

 The dataset includes 29360 records from 203 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049806-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12581962
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.15468/dl.z2a5xa
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Spectracanthicus murinus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049807-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6fhq7
title: Occurrence Download

description: A dataset containing 956 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lestidiops jayakari"
 ]
}

 The dataset includes 956 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049810-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgc7zm
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium alexandrinum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 196 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049809-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6kzjb
title: Occurrence Download

description: A dataset containing 49079 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cardellina rubrifrons)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 49079 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049811-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ptdzae
title: Occurrence Download

description: A dataset containing 20185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Omalotheca norvegica"
 ]
}

 The dataset includes 20185 records from 251 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049812-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/aac-s6k-0bf
title: Isanda H. Adams & A. Adams, 1854

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/es5-gmp-9jy
title: Littorina obtusata (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d1t-fnf-r5w
title: Rochia virgata (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e32-78t-9k2
title: Cochlostoma philippianum (Gredler, 1853)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5j8-l4z-vjs
title: Aperostoma inca (A. d'Orbigny, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aht-8qa-rwd
title: Littorina fabalis (W. Turton, 1825)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hsv-55k-j8y
title: Crossopoma planorbulum (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1ps-5dj-feg
title: Dicharax japonicus (E. von Martens, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sjh-m5c-fwl
title: Steromphala tumida (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1jj-6k5-v78
title: Truncatella Risso, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g76-68t-dbr
title: Callista floridella (Gray, 1838)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sk0-wsc-4ay
title: Phasianellidae Swainson, 1840

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/amf-gn4-yq5
title: Littoraria scabra (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p24-qb0-tml
title: Bythiospeum clessini (Weinland, 1883)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/88b-k7m-n73
title: Gibbula magus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/68x-pan-1xc
title: Gibbula ardens (Salis Marschlins, 1793)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6c1-1dz-3ds
title: Neritina Lamarck, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1mz-8yw-xsw
title: Umbonium Link, 1807

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s3s-cvg-73v
title: Vittina variegata (Lesson, 1831)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k0f-58t-3j7
title: Fissurella oriens G. B. Sowerby I, 1834

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8s3-r3h-jgq
title: Pomatias elegans (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c8s-4es-lae
title: Viviparus Montfort, 1810

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2j2-zb2-ya2
title: Pomatias elegans (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4rz-s5c-rs7
title: Manzonia crassa (Kanmacher, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pcj-n6m-fhh
title: Nerita chamaeleon Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hdp-ded-tnl
title: Asbjornsenia pygmaea (Lovén, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k0k-fbk-jaa
title: Potamopyrgus antipodarum (J. E. Gray, 1843)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4vy-tdg-ekg
title: Potamopyrgus antipodarum (J. E. Gray, 1843)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zx9-jd8-z46
title: Nerita albicilla Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.bpy3v7
title: Occurrence Download

description: A dataset containing 234963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Portugal, Belgium, France, Netherlands, Switzerland, Germany, Spain, China, Korea, Republic of, Hong Kong)",
 "TaxonKey is Vespa velutina"
 ]
}

 The dataset includes 234963 records from 855 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009548-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.