cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25602000.v1
title: Model predictions (updated).

description: All model predictions on three scRNA-seq datasets for the updated scNODE paper (https://www.biorxiv.org/content/10.1101/2023.11.22.568346v2).
DOI: 10.6084/m9.figshare.28873196.v1
title: DepMap dataset used in Vijay, Karisani, et al. (2025)

description: This DepMap dataset contains data from CRISPR knockout screens from project Achilles, as well as genomic characterization data from the CCLE project. For more information about the pipelines, please refer to the DepMap portal, available at https://depmap.org/portal/. Note that the data has been processed internally in alignment with DepMap 23Q2-v97.The primary dataset files are located in the M<code>ain_Data/</code> folder. For additional details, please refer to the manuscript.
DOI: 10.6084/m9.figshare.7885679.v1
title: Regulation of H2A ubiquitination and SLC7A11 expression by BAP1 and PRC1

description: SLC7A11 (or xCT) imports extracellular cystine into cells to promote glutathione synthesis, thus inhibiting ferroptosis. <i>SLC7A11</i> expression is tightly controlled in normal cells and its dysregulation results in aberrant expression of <i>SLC7A11</i> in human cancers. We recently discovered that tumor suppressor BAP1, a H2A deubiquitinase, represses <i>SLC7A11</i> expression by reducing H2A ubiquitination (H2Aub) on the <i>SLC7A11</i> promoter. BAP1 inactivation in cancer cells leads to <i>SLC7A11</i> de-repression, ferroptosis resistance, and tumor development. Here we show that BAP1 promotes ferroptosis induced by class I ferroptosis inducer (FIN) erastin but not by class II FIN RSL3, further supporting that BAP1 regulates ferroptosis through SLC7A11. In addition, we studied how BAP1 coordinates with other transcription factors to regulate <i>SLC7A11</i> expression and show that BAP1-mediated <i>SLC7A11</i> repression does not require NRF2 and ATF4 transcription factors. Finally, we show that, while BAP1 decreases whereas PRC1 (a major H2Aub ubiquitin ligase) increases H2Aub binding on the <i>SLC7A11</i> promoter, both BAP1 and PRC1 represses <i>SLC7A11</i> expression, suggesting that a dynamic regulation of H2Aub is important for <i>SLC7A11</i> repression. Together, our data provide additional insights on epigenetic regulation of <i>SLC7A11</i> expression in cancer cells.
DOI: 10.17632/x2wr33t652
title: Ecotoxicology Research Dataset (1974-2019)

description: The open access ecotoxicology reseach & publication dataset, which was indexed by Scopus from 1974 to 2019. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.6084/m9.figshare.29046281.v1
title: Boer_Anglo-Nubian_and_Murcia_Granada_50K_Genotype_data

description: Boer_Anglo-Nubian_and_Murcia_Granada_50K_Genotype_data
DOI: 10.6084/m9.figshare.29093651.v2
title: The Role of Global Ranking Systems in Shaping Nursing Education in LMICs: A Scoping Review

description: The purpose of this scoping review is to systematically identify and collate the current criteria used in ranking nursing programs globally, explore their applicability in Low and Middle-Income Countries (LMICs), and propose recommendations for ranking nursing programs in LMICs.
DOI: 10.6084/m9.figshare.29143544.v1
title: Supplementary Material for: Prognostic significance of modified Glasgow Prognostic Score in patients undergoing FOLFOXIRI plus bevacizumab therapy for advanced or metastatic colorectal cancer

description: Introduction: The prognostic value of the modified Glasgow Prognostic Score (mGPS), a systemic inflammatory response marker, has been reported in various cancers. However, its role in patients with metastatic colorectal cancer (mCRC) undergoing first-line FOLFOXIRI + bevacizumab (BV) therapy remains unclear. In this study, we aimed to evaluate the prognostic significance of pretreatment mGPS and other inflammatory markers in this patient population.
Methods: This study retrospectively reviewed 133 patients with mCRC treated with first-line FOLFOXIRI + BV. We assessed the prognostic value of pretreatment mGPS and other inflammatory markers (NLR, PLR, LMR) in relation to progression-free survival (PFS) and overall survival (OS).
Results: Higher mGPS (score 2) was significantly associated with poor PFS and OS. Multivariate analysis identified mGPS 2 as an independent predictor of worse PFS (hazard ratio 2.76, p = 0.004) and OS (hazard ratio 3.43, p &lt; 0.001). No significant associations were found between other inflammatory markers and survival outcomes.
Conclusions: Pretreatment mGPS is a simple and useful prognostic factor for mCRC patients receiving FOLFOXIRI + BV therapy and may serve as a convenient indicator for accurate prognosis prediction and treatment decision-making.
DOI: 10.6084/m9.figshare.6895109.v1
title: Impacts of human disturbance on ghost crab burrow morphology and distribution on sandy shore

description: Data on ghost crab distribution and burrow morphology
DOI: 10.17632/b6prs4yrfx
title: Supplemental Table S1. Descriptive statistics (mean ± standard deviation) of minerals in sheep milk

description: Descriptive statistics (mean ± standard deviation) of minerals in sheep milk
DOI: 10.17632/p8gc8ghb5c
title: Understanding Customer Preferences at Kanoko Coffee Shop for Sustainable Sales

description: There are three main source dataset for this Customer Preference from Kanoko Coffee Shop, that consist of Google Review, Facebook Review, and Pergi Kuliner Review. We find that from the three sources, there are some similar review from the customer that have visited Kanoko Coffee Shop. We use the dataset to help us understanding and analyzing pattern of each customer preferences that are reviewing Kanoko Coffee Shop. And we find there are many important factors that have effect to the sales of a Coffee Shop.
DOI: 10.17632/vg37xm6jh8
title: Occipital involvement in classic Frontal Fibrosing Alopecia: clinical and trichoscopic cross-sectional study in 17 patients

description: Supplemental material of our original study "Occipital involvement in classic Frontal Fibrosing Alopecia: clinical and trichoscopic cross-sectional study in 17 patients".
DOI: 10.6084/m9.figshare.16635040.v1
title: Supplementary Material for: Geriatric Assessments Can Predict Functional Outcome and Mortality after Urological Tumor Surgery

description: <b><i>Introduction:</i></b> Older patients undergoing major urological tumor surgery are at severe risk of functional deterioration, complications, and mortality. We prospectively evaluated geriatric assessment tools and developed a novel easy-to-use assessment tool for clinical use. <b><i>Methods:</i></b> In 159 patients, geriatric assessment tools were used prior to cystectomy, prostatectomy, and renal tumor surgery, and their peri- and postoperative courses were recorded. Using all the tests, a short and easy-to-use assessment tool was developed, and nomograms were generated to predict functional outcomes and mortality. <b><i>Results:</i></b> Of all the patients, 13.8% underwent radical cystectomy, 37.7% underwent radical prostatectomy, and 48.4% underwent tumor surgery of the kidney at the age of 70 years or older. The average age was 75.6 years. Incomplete functional recovery at day 30 and day 180 was observed in 37.7% and 36.1% of the patients, respectively, and incomplete functional recovery was associated with impaired mobility, previous care dependency, frailty, comorbidities, and a high ASA score. The only predictor for high-grade complications was comorbidities, whereas mortality was associated with the geriatric screening tool scores, impaired mobility, preoperative care dependency, and comorbidities. The Erlangen Index (EI), a combination of the selected assessment tools, showed a good prediction of early (<i>p</i> = 0.002) and medium-term (<i>p</i> = 0.002) functional outcomes and mortality (<i>p</i> = 0.001). <b><i>Conclusion:</i></b> Our prospective evaluation confirms the high risk of incomplete functional recovery, high-grade complications, and mortality in older patients undergoing major urological tumor surgery. The EI is an easy-to-use preoperative assessment tool and therefore should be used in preoperative patient counseling.
DOI: 10.6084/m9.figshare.26413180.v1
title: Data: Effects of exercise on black seabream cognition, behaviour and brain (for manuscript titled: Boosting brains: Exercise enhances cognition and neuron counts in a fish reared for release into nature)

description: Data from a study on aquacultural rearing of black seabream (Acanthopagrus schlegelii), focussed on increased tank water velocity to induce positive effects on cognitive ability.Uploaded files:readme.txt: description of datascript_seabream.cogn.R: R script for analysesBoldness_Data.csv: data on boldness behaviourExploration_Data.csv: data on exploration behaviourActivity_Data.csv: data on swimming activityCogn_Data.csv: data from cognition testNeuron_Data.csv: data on neuron countsBrain_Data.csv: data on brain size
DOI: 10.6084/m9.figshare.27153867.v1
title: Bisen et al. 2024

description: <b>Nutritional state-dependent modulation of Insulin-Producing Cells in </b><b><i>Drosophila</i></b>
DOI: 10.17632/wc5wy48x93
title: Diurnal transcriptome landscape of a multi-tissue response to time-restricted feeding in mammals

description: Time-restricted feeding (TRF) is an emerging behavioral nutrition intervention that involves a daily cycle of feeding and fasting. In both animals and humans, TRF has pleiotropic health benefits that arise from multiple organ systems, yet the molecular basis of TRF-mediated benefits is not well understood. Here we subjected mice to isocaloric ad libitum feeding (ALF) or TRF of a Western diet and examined gene expression changes in samples taken from 22 peripheral organs and brain regions collected every 2 h over a 24-h period. We discovered that TRF profoundly impacts gene expression. Nearly 80% of all genes show differential expression or rhythmicity under TRF in at least one tissue. Functional annotation of these changes revealed tissue- and pathway-specific impacts of TRF. These findings and resources provide a critical foundation for future mechanistic studies, and will help to guide human time-restricted eating (TRE) interventions to treat various disease conditions with or without pharmacotherapies.

Dataset-1: TMM normalized counts of diurnal mRNA expression in 22 tissues from mice subjected to ad-libitum feeding (ALF) or 9 hr time-restricted feeding (TRF) of Western diet.

Dataset-2: DE analysis for all 22 tissues using edgeR.

Dataset-3: Rhythmic analysis for all 22 tissues under ALF and TRF conditions using Metacycle.

Dataset-4: Raw and normalized metabolite levels in liver samples from ALF and TRF mice obtained from Metabolon, Inc., along with DE and rhythmic analyses.
DOI: 10.17632/smvny46yrg
title: S&P 500 Index

description: S&P 500 Index open, high, low and close values from 02/01/1983 to 10/18/2019. Frequency 1 minute. Source: pytrading.com
DOI: 10.6084/m9.figshare.14877765.v3
title: MRI datasets used in the manuscript: "An End-to-End AI-Based Framework for Automated Discovery of Rapid CEST/MT MRI Acquisition Protocols and Molecular Parameter Quantification (AutoCEST), Magn. Reson. Med. 2022"

description: The data comprises raw and analyzed .mat format images (can be read by Python, Matlab, and other software).<br>The images were acquired using a 9.4T preclinical MRI, on chemical exchange saturation transfer (CEST) in-vitro models (phantoms) and in-vivo mice including:1) Iohexol2) Phosphocreatine (pCr)3) Bovine serum albumin (BSA)4) L-arginine5) MT/Amide brain imaging of wild-type mice<br>Detailed datasets properties are available in the below mentioned reference.<br>Please cite the manuscript's reference in case the data are being used.<br><br>
DOI: 10.6084/m9.figshare.1491435.v2
title: Monte o seu perfil de solo

description: Perfil de Solo, monolito para ser colorido, pintado e montado.
DOI: 10.6084/m9.figshare.20941735.v1
title: RADAR Baseline

description: Baseline RADAR data for drone deterrence experiment
DOI: 10.17605/osf.io/suwtm
title: Outcomes of Percutaneous Miotomies for Congenital Muscular Torticollis Treatment

description: A total of 24 patients with CMT, treated between 2013 and 2023, were retrospectively analyzed to evaluate the efficacy, safety, and long-term aesthetic and functional results after treatment with percutaneous myotomies and enriched fat grafting. Inclusion criteria for the study were patients with CMT with or without the presence of previous surgeries and at least two years of follow-up.
Datasets, charts and statistics that support findings.
DOI: 10.6084/m9.figshare.12350669.v3
title: CLIMIFUN: Climatic and temporal control on ecosystem structure and function.

description: Dataset from Delgado-Baquerizo et al. (2020). The influence of soil age on ecosystem structure and function across biomes.
DOI: 10.6084/m9.figshare.19513705.v1
title: Seq2Seq training data.csv

description: This is the training dataset for the seq2seq model that contains source comments that are offensive and target comments which are non-offensive.
DOI: 10.6084/m9.figshare.11973588.v1
title: bulk.h5

description: test
DOI: 10.6084/m9.figshare.24516388.v1
title: human intestine spatial transcriptomics data

description: The human intestine Visium dataset for spatially proximal cell-cell communication analysis using CellChat v2. We download this dataset from https://simmonslab.shinyapps.io/FetalAtlasDataPortal/.
DOI: 10.6084/m9.figshare.28485206.v1
title: Supplementary Material for: Clinicopathological Factors Affecting Positive Margins after Breast-Conserving Surgery: A Comparative Study of Low- and High- Volume Hospitals.

description: Purpose: Positive margins after breast-conserving surgery (BCS) are an important risk factor for local tumor recurrence and the need for re-excision in women with breast cancer. It remains unclear which factors collectively influence positive margins after BCS and whether the outcomes vary among hospitals. This study investigated the occurrence and risk factors of positive margins after BCS in women with breast cancer in two Dutch hospitals.
Methods: Data was collected retrospectively from medical records of women who were diagnosed with newly invasive breast carcinoma or carcinoma in situ and underwent primary BCS between January 1, 2018 and December 31, 2020 in two Dutch hospitals.
Results: A total of 423 cases (410 patients) were included, with a median age of 58 years (IQR 51-66). On average the positive margin rate after BCS was 8.0%, which was significantly higher in the low-volume hospital (14.9%) than in the high-volume hospital (5.9%). Invasive lobular carcinoma (OR= 4.97, CI= 1.91 – 12.94), postoperative tumor size (OR= 1.07, CI= 1.03 – 1.11), low hospital volume (OR= 3.90, CI= 1.58 – 9.66), and lumpectomy size (OR= 0.97, CI= 0.94 – 1.00) were significantly associated with positive margins after BCS. 
Conclusion: Positive margin rate after BCS was low with 8.0% among all cases and varied significantly between the hospitals. Patient-, tumor-, radiological- and surgery-related factors may contribute to these variations. An optimized collaborative multidisciplinary approach to breast cancer care, particularly between radiologists and surgeons, should be strived to achieve improved oncological outcomes in women after BCS.
DOI: 10.17632/8h6jkvsr7t
title: Green Accounting Research Dataset (1992-2019 )

description: The Green Accounting research & publication dataset, which was indexed by Scopus from 1992 to 2019. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.6084/m9.figshare.21729359.v1
title: Three-point bending test data and procedures

description: The tests were conducted according to the procedures specified in ASTM D7264 (2015) to determine the flexural stiffness and strength properties by loading the sample to failure.
DOI: 10.6084/m9.figshare.9730703.v1
title: Placement files and comparison from A global metabarcoding analysis expands molecular diversity of Platyhelminthes and reveals novel early-branching clades

description: The two jplace files contain the results of EPA and pplacer. The .txt file is the comparison of these files conducted by the software genesis.
DOI: 10.6084/m9.figshare.19947947.v1
title: Other dataset

description: Other dataset, including BC per capita, ES/ED per capita, and population of 61 B&R countries, B&R regions and globally from 1990-2019.
DOI: 10.6084/m9.figshare.25465477.v1
title: supplemental data for ZEPA

description: supplemental data for ZEPA, including the raw raw images in Figure 6, the cell annotations in ZEPA, cCREs in ZEPA and dynamic cCREs during zebrafish development.
DOI: 10.6084/m9.figshare.25393621.v1
title: TPS file of landmark and semilandmarks from teleost fish scales.

description: We aimed to apply two methods of geometric morphometry on a dataset of scales from 5 different teleost species: <i>Danio rerio</i>, <i>Dicentrarchus labrax</i>, <i>Mullus surmuletus</i>, <i>Sardina pilchardus</i>, and <i>Sparus aurata</i>. 232 scales were analyzed. Danrer = Danio rerio; Diclab = Dicentrarchus labrax, Mulsur = Mullus surmuletusSarpil = Sardina pilchardiusm Spaaur = Sparus aurata.
DOI: 10.6084/m9.figshare.3547230.v1
title: Appendix A. Supplementary methods for data processing, modification of Bayesian network methods for ecological data, and analysis of networks.

description: Supplementary methods for data processing, modification of Bayesian network methods for ecological data, and analysis of networks.
DOI: 10.17632/gtx4534dtx
title: Dataset on endophytic bacterial communities of the cashew plant grown in Dak Lak, Vietnam

description: This work reports the 16S rRNA metagenomic dataset on endophytic bacterial communities in the cashew plant (Anacardium occidentale L.) grown in Dak Lak, Vietnam.
DOI: 10.17632/x54dg53rmr
title: Dataset_Arabic_speech_mispronunciation_detection

description: We introduce the largest Arabic speech mispronunciation error dataset in the Egyptian dialogues. The dataset is composed of annotated audio files representing the top 100 words that are most frequently used in the Arabic language pronounced by 100 Egyptian kids (aged between 2 and 8 years old). The dataset is collected and annotated on segmental pronunciation errors by expert listeners.
DOI: 10.6084/m9.figshare.14916570.v2
title: Physical Properties of Granitic Soils in a landslide-prone area, Serra do Mar mountain range (SP) Brazil

description: Description and laboratory analysis of granitic soils involved in landslides in Serra do Mar (Itaóca-SP), Brazil.<br>
DOI: 10.6084/m9.figshare.24648096.v1
title: Untitled Item

description: it is a test set
DOI: 10.6084/m9.figshare.4294073.v1
title: Top 100 2016 - article data

description: Full data of the articles included in the Altmetric Top 100 2016.
DOI: 10.17632/c5zy7sh5n7
title: Graphene/oxide plates and polymers molecular structure documents

description: These structures were used in molecular dynamics simulations (Materials Studio, Forcite, COMPASS III) to qualitatively observe and quantitatively assess interactions between graphene or graphene oxide plates and epoxy, ABS, or PDMS.  Dataset has been amended to include the structure file documents in .mol2 file format. 4/4/2022.
DOI: 10.48420/24923067.v1
title: Fructose dehydration data - Catalysts

description: Underpinning data set for Impact of Porous Silica Nanosphere Architectures on the Catalytic Performance of Supported Sulphonic Acid Sites for Fructose Dehydration to 5-HydroxymethylfurfuralC.-A. H. Price, A. Torres-Lopez, R. Evans, N. S. Hondow, M. A. Isaacs, A. S. Jamal, C. M. A. Parlett, <i>ChemPlusChem</i> 2023, 88, e202300413.https://doi.org/10.1002/cplu.202300413
DOI: 10.6084/m9.figshare.25272877.v1
title: Drosophila_saltans_group_2A2B_BUSCO

description: Results of the 2A2B, 2A2B head and 3A1B tests using conserved BUSCO genes of the saltans group species assemblies.
DOI: 10.17632/5dghz7nn36
title: High-engagement members of parliament in the Lok Sabha and their improved re-election prospects.

description: Our research hypothesis is that the re-election prospects of a Member of Parliament (MP) are a function of their level of engagement in parliamentary proceedings. Employing propensity score matching (PSM) techniques on a dataset of MP characteristics and activities in the 16th Lok Sabha, we can analyse the impact that high levels of parliamentary engagement metrics – attendance, questions asked, debates participated in, and private member bills introduced – have on the re-election likelihood of MPs in the 2019 general election. The results reveal that MPs who posed more questions, engaged in extensive debates, and introduced more private member bills exhibited heightened re-election prospects. However, MPs who possessed above-average and above-median attendance records experienced no significant advantage in their re-election chances. 
The data for individual MP attributes, their vote share and margins of victory in the 2014 general elections, their parliamentary activities during the 16th Lok Sabha, and their election outcomes in the 2019 general elections were sourced from PRS Legislative Research and the Trivedi Centre for Political Data’s LokDhaba dataset. The analysis is centred on MPs who served the entirety of their term from the 2014 general elections until the 2019 general elections, excluding those who left early for any reason and their replacements. MPs who were appointed as Ministers in the Union Cabinet were excluded, since they represent the government and not their constituency; therefore, their participation numbers will be skewed. Additionally, the two MPs from the Anglo-Indian community, who were nominated by the President of India and not elected, were not considered. This yielded a total analysis pool of 420 MPs. 
Eight treatment variables were constructed by including those MPs who performed above the mean and median in the four parliamentary activity measures in the treatment group (characterised as ‘high-engagement MPs), and those that performed equal to or below these benchmarks in the control group (characterised as ‘low-engagement MPs). The outcome variable is a binary variable coded ‘1’ if the MP was re-elected into the 17th Lok Sabha and ‘0’ otherwise. However, due to the aforementioned individual MP attributes indirectly affecting their participation levels (self-selection bias), assignment into treatment and control groups is non-random. Therefore, directly comparing the treatment and control groups in the presence of these systemic biases between them using a difference in means test (t-test) would result in faulty inferences. The propensity score matching technique was harnessed to identify MPs with comparable attributes across treatment and control groups, extenuating these biases. Finally, the average treatment effect on the treated (ATET) was computed to estimate the average impact of above-average and above-median parliamentary engagement on the likelihood of re-election. Stata do-file is also provided.