cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17010754
title: Extended data: Structural and Functional Impact of the G340S Mutation in Plasmodium falciparum Ferredoxin NADP⁺ Reductase: In silico Analysis and Molecular Docking.

description: Plasmodium falciparum, the deadliest malaria parasite, continues to burden health systems across sub-Saharan Africa. To reduce this burden, Artemisinin-based combination therapies (ACTs), particularly artemether-lumefantrine (AL), remain the frontline treatment. However, partial artemisinin resistance is spreading, exerting selection pressure on lumefantrine (LM), an essential long-acting partner drug. While LM has been described as refractory to resistance, its efficacy could be compromised if resistance arises. To elucidate resistance markers associated with LM, our preliminary studies mapped a mutation in Plasmodium berghei Ferredoxin NADP⁺ Reductase (FNR), G332S, corresponding to G340S in P. falciparum. PfFNR is an essential apicoplast enzyme central to key biosynthetic pathways and drug activation. To explore the structural and functional impact of the G340S substitution, this study employed an in silico bioinformatics approach. High-confidence wild-type and mutant PfFNR models were built using AlphaFold3 and I-TASSER, docking was conducted using AutoDock Vina and AlphaFold3, and molecular dynamics (MD) simulations in GROMACS. Structural visualization and interaction mapping were performed in ChimeraX.  Structural analysis indicates that G340S changes the conformation of the NADP⁺-binding loop, disrupts hydrogen-bonding networks in the cofactor-overlapping site, and decreases the cofactor-binding affinity without perturbing the overall fold. Docking revealed conserved NADP⁺ and ferredoxin binding with localized disturbances that could influence electron transfer. MD simulations revealed a differential flexibility and stability of the mutant compared to the wild-type PfFNR. Single-residue substitution within critical FNR motifs affects NADPH binding enzyme function; thus, G340S may impact enzyme catalysis, alter parasite fitness, and drug susceptibility. Experimental validations are required to confirm these predictions and assess PfFNR potential as both a biomarker and drug target in malaria control.
DOI: 10.15468/dl.5v5dww
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Austrocylindropuntia subulata",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 75 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025299-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8mh4a
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luzula johnstonii",
 "Geometry POLYGON ((-17.62504 -34.81917, 51.13387 -34.81917, 51.13387 37.34999, -17.62504 37.34999, -17.62504 -34.81917))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 113 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025298-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ak2h78
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Austrocylindropuntia subulata",
 "Country is Botswana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025300-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b99d93
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Austrocylindropuntia subulata",
 "Country is Ecuador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025301-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/ka6jjd
title: Optogenetic activation of c23 (asteroid) neurons and its negative control (Replication Data for Figure 7)

description: &lt;p&gt;
 This folder contains the antennal grooming body part kinematics data recorded after various morphological and kinematics used for Figure 7 and its supplementary figures. Additionally, a PDF illustrating the locations of the tracked key points (&lt;code&gt;tracked_keypoints.pdf&lt;/code&gt;) is provided.
&lt;/p&gt;
&lt;p&gt;
 This dataset represents the raw data. The data was further segmented and passed through behavioral checks for analysis, as described in the paper.
&lt;/p&gt;
&lt;h2&gt;Column Descriptions&lt;/h2&gt;
&lt;ul&gt;
 &lt;li&gt;&lt;strong&gt;Date:&lt;/strong&gt; Date of the experiment.&lt;/li&gt;
 &lt;li&gt;&lt;strong&gt;Genotype:&lt;/strong&gt; Genotype of the experimental animal. 
 &lt;code&gt;aJO-GAL4 x UAS-Chrimson&lt;/code&gt; is the genotype for the optogenetic activation of the antennal JO-F neurons.&lt;/li&gt;
 &lt;li&gt;&lt;strong&gt;Fly:&lt;/strong&gt; Fly number.&lt;/li&gt;
 &lt;li&gt;
 &lt;strong&gt;Exp_Type:&lt;/strong&gt; Type of experiment. Values include:
 &lt;ul&gt;
 &lt;li&gt;&lt;code&gt;airpuff_Xs&lt;/code&gt;: Airpuff stimulus for X second.&lt;/li&gt;
 &lt;li&gt;&lt;code&gt;airpuff_opto_Xs&lt;/code&gt;: Airpuff stimulus for X seconds followed by an optogenetic stimulus for 4-X seconds.&lt;/li&gt;
 &lt;li&gt;&lt;code&gt;opto_Xs&lt;/code&gt;: Optogenetic stimulus for X seconds.&lt;/li&gt;
 &lt;/ul&gt;
 All experiments were carried out using airpuff and/or optogenetic stimuli.
 &lt;/li&gt;
 &lt;li&gt;&lt;strong&gt;Trial:&lt;/strong&gt; Trial number.&lt;/li&gt;
 &lt;li&gt;&lt;strong&gt;Frame:&lt;/strong&gt; Frame number captured at 100 frames per second.&lt;/li&gt;
 &lt;li&gt;
 &lt;strong&gt;Pose_&lt;side&gt;_&lt;key_point&gt;_&lt;axis&gt;:&lt;/strong&gt; 
 Pose of the &lt;code&gt;&lt;key_point&gt;&lt;/code&gt; in the &lt;code&gt;&lt;side&gt;&lt;/code&gt; of the fly in 3D coordinates. 
 The &lt;code&gt;&lt;axis&gt;&lt;/code&gt; can be 'x', 'y', or 'z'. Key point names are provided in the accompanying PDF file. 
 The origin point is defined as the center of the fly thorax.
 &lt;/li&gt;
 &lt;li&gt;
 &lt;strong&gt;Angle_&lt;side&gt;_&lt;joint&gt;:&lt;/strong&gt; 
 Angle of the &lt;code&gt;&lt;joint&gt;&lt;/code&gt; in the &lt;code&gt;&lt;side&gt;&lt;/code&gt; of the fly, given in degrees. 
 Joint angles are defined as described in Lobato-Rios, 2022, Nature Methods.
 &lt;/li&gt;
 &lt;li&gt;&lt;strong&gt;Stimulus:&lt;/strong&gt; Whether the optogenetic stimulus was on or off at the time of frame capture.&lt;/li&gt;
 &lt;li&gt;&lt;strong&gt;Time:&lt;/strong&gt; Time in seconds from the start of the experiment.&lt;/li&gt;
&lt;/ul&gt;
DOI: 10.18150/mezhdp
title: Diffusion range in nanostructured fibers

description: Additional material for the article.Content:Fiber design (image and Matlab file) Images of germanium and ytterbium rods with different diffusion SEM images of the fabricated fiberPlease consult the Readme.txt file for additional information.
DOI: 10.1594/pangaea.977634
title: AntLeads: Monthly wintertime sea-ice lead maps for the Antarctic, April-September, 2003–2023

description: The AntLeads dataset provides data about lead occurrences in Antarctic sea ice during wintertime (Apr-Sep) for the 21-years period of 2003-2023. It includes monthly lead frequencies (LF), i.e. a measure for how often during a month a lead was present at a specific position in the sea ice at a spatial resolution of 1 km². The LF data field is accompanied by a potential absolute Integration Error (pIE), which represents a per-pixel measure of absolute uncertainty for the derived LF value, caused by data gaps due to clouds in the daily data that were used to derive monthly LF maps. The AntLeads dataset provides a basis for investigations into the complex pan-Antarctic interplay between sea ice, ocean and atmosphere. The presented data can help to better estimate and untangle the individual contribution of atmospheric and oceanic forcings on sea-ice lead dynamics in the Southern Ocean.
description: Each file is in NETCDF4 format and contains two fields at 1 km² spatial resolution each: 1) The monthly lead frequency (LF) and 2) the absolute potential Integration Error (pIE). Both fields have applied a scaling factor of s = 1000.Basic import:path = 'data_path/'file = '200907_LF.nc'fname = path + filenc = Dataset(fname, 'r', 'netCDF4')print(nc.description)meanLF = nc['meanLF'][:]pIE = nc['potInterpError'][:]nc.close()meanLF = meanLF/1000pIE = pIE/1000
DOI: 10.15468/dl.xut6tm
title: Occurrence Download

description: A dataset containing 2070 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((4.67636 44.52343,4.69446 44.52343,4.69446 44.52745,4.67636 44.52745,4.67636 44.52343))",
 "Geometry POLYGON((4.65743 44.4924,4.73176 44.4924,4.73176 44.5578,4.65743 44.5578,4.65743 44.4924))"
 ]
 },
 "HasGeospatialIssue is false",
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862",
 "TaxonKey is Insecta"
 ]
}

 The dataset includes 2070 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025302-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4z6cf2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunus incisa"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025303-250827131500795/datasets/export for details.
DOI: 10.48580/dgt4t
title: Catalogue of Life
DOI: 10.15468/dl.vxua9q
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Austrocylindropuntia subulata",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025304-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtwm2j
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Austrocylindropuntia subulata",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 87 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025306-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgcqck
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achyrospermum carvalhoi",
 "Geometry POLYGON ((-17.62504 -34.81917, 51.13387 -34.81917, 51.13387 37.34999, -17.62504 37.34999, -17.62504 -34.81917))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 119 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025305-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30051157
title: data_paper3.xlsx

description: Data describes epiphytic lichen and bryophyte species identified on first 2 stem meters of three host tree (fir, spruce, beech) in a temperate mountain forest (southern Black Forest, Germany). Environmental drivers are substrate chemistry, including base cations and transition metals. Functional traits are compiled, including lichen substances, growth form, photobiont type and bryophyte lifer form and degree of epiphytism.
DOI: 10.6084/m9.figshare.30051157.v1
title: data_paper3.xlsx

description: Data describes epiphytic lichen and bryophyte species identified on first 2 stem meters of three host tree (fir, spruce, beech) in a temperate mountain forest (southern Black Forest, Germany). Environmental drivers are substrate chemistry, including base cations and transition metals. Functional traits are compiled, including lichen substances, growth form, photobiont type and bryophyte lifer form and degree of epiphytism.
DOI: 10.15468/dl.x8nb84
title: Occurrence Download

description: A dataset containing 451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Austrocylindropuntia subulata",
 "Country is Kenya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 451 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025308-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hq286y
title: Occurrence Download

description: A dataset containing 11187 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxalis latifolia"
 ]
}

 The dataset includes 11187 records from 454 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025307-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqw3fe
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium bifidum"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025310-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ms678k
title: Occurrence Download

description: A dataset containing 103577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-200.0",
 "Country is France",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia",
 "Year 2010-2025"
 ]
}

 The dataset includes 103577 records from 896 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025282-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjg4b6
title: Occurrence Download

description: A dataset containing 725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tetradymia spinosa",
 "Year 1970-2025"
 ]
}

 The dataset includes 725 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025313-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25377/sussex.29852018
title: Data for figures in 'Resonator-assisted quantum transduction between superconducting qubits andtrapped atomic systems via Rydberg levels'

description: The data set contains all data used for the figures in the 'Resonator-assisted quantum transduction between superconducting qubits and trapped atomic systems via Rydberg levels' publication in Physical Review Research. The Excel file contains all data that was used to produce all figures in the publication. The file contains several spreadsheets with each being the data set for one figure in the publication. For clarity, the spreadsheet names correspond to the relevant figure numbers.<b>Paper Abstract</b>Using a shared microwave resonator, we propose a transduction scheme between superconducting qubits and qubit states encoded in the low-lying internal levels of trapped atomic systems. The approach employs atomic Rydberg levels together with laser pulses that connect them to the low lying qubit states. We explore two coupling protocols: one based on resonant interactions between the subsystems, and another operating in the dispersive regime, where the resonator is far detuned from the transition frequencies of the matter qubits. These protocols enable the transfer of a general qubit state from the superconducting qubit to the atomic qubit. Transfer fidelity is evaluated across different coupling regimes and under various sources of dissipation and decoherence, including resonator decay, Rydberg state decay, and both relaxation and pure dephasing of the superconducting qubit, providing a detailed assessment of the performance of the proposed scheme.
DOI: 10.25377/sussex.29852018.v1
title: Data for figures in 'Resonator-assisted quantum transduction between superconducting qubits andtrapped atomic systems via Rydberg levels'

description: The data set contains all data used for the figures in the 'Resonator-assisted quantum transduction between superconducting qubits and trapped atomic systems via Rydberg levels' publication in Physical Review Research. The Excel file contains all data that was used to produce all figures in the publication. The file contains several spreadsheets with each being the data set for one figure in the publication. For clarity, the spreadsheet names correspond to the relevant figure numbers.<b>Paper Abstract</b>Using a shared microwave resonator, we propose a transduction scheme between superconducting qubits and qubit states encoded in the low-lying internal levels of trapped atomic systems. The approach employs atomic Rydberg levels together with laser pulses that connect them to the low lying qubit states. We explore two coupling protocols: one based on resonant interactions between the subsystems, and another operating in the dispersive regime, where the resonator is far detuned from the transition frequencies of the matter qubits. These protocols enable the transfer of a general qubit state from the superconducting qubit to the atomic qubit. Transfer fidelity is evaluated across different coupling regimes and under various sources of dissipation and decoherence, including resonator decay, Rydberg state decay, and both relaxation and pure dephasing of the superconducting qubit, providing a detailed assessment of the performance of the proposed scheme.
DOI: 10.15468/dl.xzyzfv
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Saudi Arabia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Citrullus colocynthis"
 ]
}

 The dataset includes 123 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025314-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7795/720.20250709
title: CHF3 infrared absorption cross sections (single components)

description: This dataset contains infrared absorption cross section spectra of fluoroform (CHF3) in synthetic air at the temperatures 296.90(8) and 296.07(8), and various total and partial pressures in the wavenumber range of 600-1940cm-1. Every spectrum was splitted into 6 regions containing an isolated absorption feature, making a total of 12 *.dat files. Every single file contains a different number of spectra, representing only spectra used in the creation of the corresponding composite spectrum (available at https://doi.org/10.7795/720.20250708).

If the recorded experimental absorption at a certain wavenumber exceeded the cut-off limit (i.e., the spectrum was saturated), its uncertainty was set to 1.00E+10 and absorption cross section itself was set to zero to avoid misreading of empty values. In spectra 1b and 5b absorptions (and, subsequently, cross sections) were manually set to zero due to the remaining CF4 absorption feature around 1280 cm-1 (v3 band); the expanded uncertainties for these points were also manually changed to 1.00E+10 to exclude these points from consideration and weighted averaging. NB: the expanded uncertainty for single components does not include the uncertainty of the absorption path length!
description: Description of the individual files: 
Each file contains a three-line header in the following format: 
The 1st line is the column name (Wavenumber, Abs_Xsect, Exp_unc, ...), where Abs_Xsect stands for the absorption cross section and Exp_unc means the expanded uncertainty (k=2). 
The 2nd line contains the units of the corresponding quantities (cm^-1, cm^2/molecule, cm^2/molecule, ...). 
The 3rd line is assigned for column labeling: 
* the Wavenumber column has the "empty" label "--"; 
* Abs_Xsect columns are labeled in the following format: `[number of experimental spectrum]_[total pressure in hPa]_[partial pressure of CHF3 in hPa]`; 
* Exp_unc columns are labeled "2sigma" to indicate coverage factor of 2.

Method: FTIR 
Format: .dat (TAB as column separator) 
Rcommended software: MS Excel, Origin (proprietary), or any text editor (e.g., Notepad) 
Parameters: in the filename in the following format: CHF3_[temperature in K]_[total pressure in Torr]_air_[wavenumber interval in cm-1]_[nominal resolution in cm-1]_components.dat and in the 3rd line of header for individual spectrum (see description of the individual files).
description: This work was done within the project “Metrology for climate relevant volatile organic compounds”, MetClimVOC. The project has received funding from EMPIR programme co-financed by the Participating States and from the European Union’s Horizon 2020 research and motivation programme.
DOI: 10.7795/720.20250708
title: CHF3 infrared absorption cross sections

description: This dataset is generated from two composite infrared absorption cross section spectra of fluoroform (CHF3) in synthetic air at the temperatures 296.90(8) and 296.07(8) and the total pressures 674.69(62) and 748.92(70) Torr, respectively, in the range of 600-1940cm-1. Every spectrum was splitted into 6 regions, containing an isolated absorption feature. This makes 12 *.dat files altogether. Single components are available at https://doi.org/10.7795/720.20250709.
description: Description of the individual files: 
Each file contains three columns: 1. Wavenumber (in cm-1); 2. Absorption cross section (in cm^2/molecule); 3. Expanded uncertainty (in cm^2/molecule).

Method: FTIR 
Format: .dat (TAB as column separator) 
Recommended software: MS Excel, Origin (proprietary), or any text editor (e.g., Notepad) 
Parameters: in the filename in the following format: `CHF3_[temperature in K]_[total pressure in Torr]_air_[wavenumber interval in cm-1]_[nominal resolution in cm-1].dat`
description: This work was done within the project “Metrology for climate relevant volatile organic compounds”, MetClimVOC. The project has received funding from EMPIR programme co-financed by the Participating States and from the European Union’s Horizon 2020 research and motivation programme.
DOI: 10.15468/dl.p9zew2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "ScientificName is Amphibalanus sp.",
 "Continent is Europe",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025220-250827131500795/datasets/export for details.