cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/64m-wc4-pzz
title: Scilla bifolia L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/7n1-cx4-11k
title: Cotoneaster integerrimus Medik.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/py0-bnl-1yn
title: Herniaria hirsuta L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5281/zenodo.17187320
title: Trunk-Based Development in Open Source Software Projects: A Data Driven Approach

description: See 0_README.md.
DOI: 10.5281/zenodo.17187321
title: Trunk-Based Development in Open Source Software Projects: A Data Driven Approach

description: See 0_README.md.
DOI: 10.3535/bqy-h9x-2ll
title: Herniaria hirsuta L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/s2q-q3v-8d3
title: Lappula squarrosa (Retz.) Dumort.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.umj4mt
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex korkischkoae A.E.Kozhevn."
 ]
}

 The dataset includes 29 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000805-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrxmvy
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vipera sakoi (Tuniyev, Avci, Tuniyev, Ilgaz, Olgun, Petrova, Bodrov, Geniez & Teynié, 2018)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049319-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xsbvg
title: Occurrence Download

description: A dataset containing 1016 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex korshinskyi Kom."
 ]
}

 The dataset includes 1016 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000813-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ya5htb
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coelogyne lycastoides F.Muell. & Kraenzl."
 ]
}

 The dataset includes 95 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000807-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.suaq3y
title: Occurrence Download

description: A dataset containing 337 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coeligena prunellei (Bourcier, 1843)"
 ]
}

 The dataset includes 337 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011706-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syk2se
title: Occurrence Download

description: A dataset containing 315536 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bromus sterilis L."
 ]
}

 The dataset includes 315536 records from 2153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000776-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14697858
title: Digitale gegevens bij het Eindverslag Opgraving Mechelen Kerkenbos (2018)

description: Digital data (photographs, drawings, GIS data, find list) from an archaeological excavation at Mechelen Kerkenbos (Flanders, Belgium), from a middle bronze to early iron age burial field, and Roman traces.
DOI: 10.15468/dl.t3wyap
title: Occurrence Download

description: A dataset containing 364357 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cacatua sanguinea Gould, 1843)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 364357 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054994-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qq5vr2
title: Occurrence Download

description: A dataset containing 998780 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cacatua galerita (Latham, 1790))",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 998780 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054993-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tw2925
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Dalbergia ruddiae J.Linares & M.Sousa"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055009-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5hhd3t
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achnanthes eutrophila Lange-Bertalot, 1996",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.7576 -24.3688,20.529 -24.0715,20.509 -24.0715,20.509 -28.5786,25.5395 -28.5786,25.5395 -24.0715,25.1306 -24.0715,24.9333 -24.4571,23.8962 -24.2467,22.8065 -24.295,22.3719 -24.7207,22.2323 -25.547,22.0387 -25.7188,21.7833 -25.7784,21.5388 -25.7113,21.3553 -25.5415,20.7576 -24.3688))"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055008-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4rz9c
title: Occurrence Download

description: A dataset containing 684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melipona scutellaris Latreille, 1811)",
 "Country is one of (Brazil)"
 ]
}

 The dataset includes 684 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055010-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynxsuu
title: Occurrence Download

description: A dataset containing 4041 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Corethron pennatum (Grunow) Ostenfeld, 1909)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 4041 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055012-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.km5nad
title: Occurrence Download

description: A dataset containing 3796 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coreopsis verticillata L.)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 3796 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055011-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fw7na5
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coreopsis pubescens Elliott)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 333 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055014-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.je2pr5
title: Occurrence Download

description: A dataset containing 3269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coreopsis tripteris L.)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 3269 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055013-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u88n6j
title: Occurrence Download

description: A dataset containing 22867 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 countrycode countrycode,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, countrycode, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, countrycode, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, countrycode, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, countrycode, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, countrycode, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, countrycode, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.decimallatitude &gt;= 50.7968
 AND occurrence.decimallatitude &lt;= 55.12868
 AND (occurrence.decimallongitude &gt;= -82.54255 AND occurrence.decimallongitude &lt;= -78.34204)
 AND GBIF_WITHIN('POLYGON ((-82.54255 55.12868, -82.45806 52.96358, -82.11868 52.6068, -81.82282 52.08468, -81.3094 51.68439, -80.88301 51.15358, -80.45661 50.90992, -79.482 50.7968, -78.74233 51.17098, -78.34204 51.93675, -78.36956 52.4631, -78.59187 52.75306, -78.83552 53.64935, -79.14879 54.63267, -82.54255 55.12868))', occurrence.decimallatitude, occurrence.decimallongitude) = TRUE
 AND occurrence.occurrencestatus = 'PRESENT'
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year",
 occurrence.countrycode

 The dataset's 22867 records were derived from 235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055000-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9w3euj
title: Occurrence Download

description: A dataset containing 421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coreopsis rosea Nutt.)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 421 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055016-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76cqm7
title: Occurrence Download

description: A dataset containing 261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coridromius chenopoderis Tatarnic & Cassis, 2008)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 261 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055018-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6u2uv
title: Occurrence Download

description: A dataset containing 9119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coriandrum sativum L.)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 9119 records from 409 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055019-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29260037.v1
title: X-CRISP: Domain-Adaptable and Interpretable CRISPR Repair Outcome Prediction - Preprocessed CRISPR repair outcomes and train/test target splits

description: <b>Motivation:</b> Controlling the outcomes of CRISPR editing is crucial for the success of gene therapy. Since donor template-based editing is often inefficient, alternative strategies have emerged that leverage mutagenic end-joining repair instead. Existing machine learning models can accurately predict end-joining repair outcomes, however: generalisability beyond the specific cell line used for training remains a challenge, and interpretability is typically limited by suboptimal feature representation and model architecture.<br><b>Results:</b> We propose X-CRISP, a flexible and interpretable neural network for predicting repair outcome frequencies based on a minimal set of outcome and sequence features, including microhomologies (MH). Outperforming prior models on detailed and aggregate outcome predictions, X-CRISP prioritised MH location over MH sequence properties such as GC content for deletion outcomes. Through transfer learning, we adapted X-CRISP pre-trained on wild-type mESC data to target human cell lines K562, HAP1, U2OS, and mESC lines with altered DNA repair function. Adapted X-CRISP models improved over direct training on target data from as few as 50 samples, suggesting that this strategy could be leveraged to build models for new domains using a fraction of the data required to train models from scratch.<b>Article DOI: </b>https://doi.org/10.1101/2025.02.06.636858<b>Details:</b> The repository contains fasta files detailing the target sequences used for training and testing. Entry in the fasta file describes the target_name, index of the PAM sequence, and the orientation of the sequence (FORWARD/REVERSE). This repository also contains all the processed CRISPR mutational outcomes after the "Data and pre-processing" steps were completed. There is one zip file per cell type. The zip files contain tsv files for each processed target site with the headers:<br>Type: INSERTION/DELETIONSize: Insertion/deletion sizeStart: Start locationInsSeq: Inserted sequence length (if insertion)homologyLength: Homology length (if deletion)countEvents: Repair outcome counts<br><br>
DOI: 10.6084/m9.figshare.29260037
title: X-CRISP: Domain-Adaptable and Interpretable CRISPR Repair Outcome Prediction - Preprocessed CRISPR repair outcomes and train/test target splits

description: <b>Motivation:</b> Controlling the outcomes of CRISPR editing is crucial for the success of gene therapy. Since donor template-based editing is often inefficient, alternative strategies have emerged that leverage mutagenic end-joining repair instead. Existing machine learning models can accurately predict end-joining repair outcomes, however: generalisability beyond the specific cell line used for training remains a challenge, and interpretability is typically limited by suboptimal feature representation and model architecture.<br><b>Results:</b> We propose X-CRISP, a flexible and interpretable neural network for predicting repair outcome frequencies based on a minimal set of outcome and sequence features, including microhomologies (MH). Outperforming prior models on detailed and aggregate outcome predictions, X-CRISP prioritised MH location over MH sequence properties such as GC content for deletion outcomes. Through transfer learning, we adapted X-CRISP pre-trained on wild-type mESC data to target human cell lines K562, HAP1, U2OS, and mESC lines with altered DNA repair function. Adapted X-CRISP models improved over direct training on target data from as few as 50 samples, suggesting that this strategy could be leveraged to build models for new domains using a fraction of the data required to train models from scratch.<b>Article DOI: </b>https://doi.org/10.1101/2025.02.06.636858<b>Details:</b> The repository contains fasta files detailing the target sequences used for training and testing. Entry in the fasta file describes the target_name, index of the PAM sequence, and the orientation of the sequence (FORWARD/REVERSE). This repository also contains all the processed CRISPR mutational outcomes after the "Data and pre-processing" steps were completed. There is one zip file per cell type. The zip files contain tsv files for each processed target site with the headers:<br>Type: INSERTION/DELETIONSize: Insertion/deletion sizeStart: Start locationInsSeq: Inserted sequence length (if insertion)homologyLength: Homology length (if deletion)countEvents: Repair outcome counts<br><br>
DOI: 10.15468/dl.qzufrx
title: Occurrence Download

description: A dataset containing 14339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coriaria myrtifolia L.)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 14339 records from 229 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055021-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9cuxg4
title: Occurrence Download

description: A dataset containing 266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coreopsis nuecensis A.Heller)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 266 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055017-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r688va
title: Occurrence Download

description: A dataset containing 499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coriaria nepalensis Wall.)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 499 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055023-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12210062
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.5dhphh
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Corispermum elongatum Bunge)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 51 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055024-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15692218
title: Data and Python3 for "Rapid Shrinking of the Warming Hole over the United States in ERA5 and SPEAR"

description: The tar.gz file includes subdirectories for each Figure and related data files in Netcdf Format and Python3 script. Please refer to the Python3 script for the modules required.
DOI: 10.5281/zenodo.15692219
title: Data and Python3 for "Rapid Shrinking of the Warming Hole over the United States in ERA5 and SPEAR"

description: The tar.gz file includes subdirectories for each Figure and related data files in Netcdf Format and Python3 script. Please refer to the Python3 script for the modules required.
DOI: 10.15468/dl.mgwm97
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Corethrodendron multijugum (Maxim.) B.H.Choi & H.Ohashi)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 131 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055020-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnvrcq
title: Occurrence Download

description: A dataset containing 330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Corispermum americanum (Nutt.) Nutt.)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 330 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055022-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12210071
title: Daftar Pengadilan Indonesia
DOI: 10.15468/dl.6tkyzf
title: Occurrence Download

description: A dataset containing 3621 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coriolopsis gallica (Fr.) Ryvarden)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 3621 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055025-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/z71-9m3-gym
title: Alchemilla monticola Opiz

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/z71-ab8-g37
title: Prunus padus x ssp. borealis × ssp. padus

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/z71-en5-q6w
title: Alchemilla murbeckiana Buser

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.