cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14436107
title: Additional file 1 of Development and validation of a flax (Linum usitatissimum L.) gene expression oligo microarray

description: Additional file 1: Analyses of differential gene expression between stem inner tissues and stem outer tissues sampled at vegetative and green capsule stages. Lists of differentially expressed genes and GO analyses (biological processes) for i) stem inner vegetative (SIV) vs stem outer vegetative (SOV), ii) stem inner green capsule (SIGC) vs stem outer green capsule (SOGC), iii) stem inner vegetative (SIV) vs stem inner green capsule (SIGC), iv) stem outer vegetative (SOV) vs stem outer green capsule (SOGC). (XLS 768 KB)
DOI: 10.6084/m9.figshare.14436107.v1
title: Additional file 1 of Development and validation of a flax (Linum usitatissimum L.) gene expression oligo microarray

description: Additional file 1: Analyses of differential gene expression between stem inner tissues and stem outer tissues sampled at vegetative and green capsule stages. Lists of differentially expressed genes and GO analyses (biological processes) for i) stem inner vegetative (SIV) vs stem outer vegetative (SOV), ii) stem inner green capsule (SIGC) vs stem outer green capsule (SOGC), iii) stem inner vegetative (SIV) vs stem inner green capsule (SIGC), iv) stem outer vegetative (SOV) vs stem outer green capsule (SOGC). (XLS 768 KB)
DOI: 10.6084/m9.figshare.14436110
title: Additional file 2 of Development and validation of a flax (Linum usitatissimum L.) gene expression oligo microarray

description: Additional file 2: Analyses of differential gene expression (selected functional groups) between stem inner tissues and stem outer tissues sampled at vegetative and green capsule stages. Lists of differentially expressed genes (selected functional groups only) for i) stem inner vegetative (SIV) vs stem outer vegetative (SOV), ii) stem inner green capsule (SIGC) vs stem outer green capsule (SOGC), iii) stem inner vegetative (SIV) vs stem inner green capsule (SIGC), iv) stem outer vegetative (SOV) vs stem outer green capsule (SOGC). Lists of differentially expressed genes and GO analyses (biological processes) for i) stem inner vegetative (SIV) vs stem outer vegetative (SOV), ii) stem inner green capsule (SIGC) vs stem outer green capsule (SOGC), iii) stem inner vegetative (SIV) vs stem inner green capsule (SIGC), iv) stem outer vegetative (SOV) vs stem outer green capsule (SOGC). (XLS 103 KB)
DOI: 10.6084/m9.figshare.14436113.v1
title: Additional file 3 of Development and validation of a flax (Linum usitatissimum L.) gene expression oligo microarray

description: Additional file 3: Differentially expressed genes between Drakkar and Belinka flax cultivars. List of differentially expressed genes between Drakkar and Belinka flax cultivars. Values for up-regulated genes are represented in red and those for down-regulated genes in green colour. (XLS 121 KB)
DOI: 10.6084/m9.figshare.14436113
title: Additional file 3 of Development and validation of a flax (Linum usitatissimum L.) gene expression oligo microarray

description: Additional file 3: Differentially expressed genes between Drakkar and Belinka flax cultivars. List of differentially expressed genes between Drakkar and Belinka flax cultivars. Values for up-regulated genes are represented in red and those for down-regulated genes in green colour. (XLS 121 KB)
DOI: 10.6084/m9.figshare.14331047
title: New insights into the cholesterol esterase- and lipase-inhibiting potential of bioactive peptides from camel whey hydrolysates: Identification, characterization, and molecular interaction

description: This data set and figures represents effect fo various hydrolysis varaibles on CEase and lipase inhibiting potential of camel whey hydrolysates. About 196 peptides generated by camel whey hydrolysis using a factorial design are also mentioned here.
DOI: 10.6084/m9.figshare.14331047.v2
title: New insights into the cholesterol esterase- and lipase-inhibiting potential of bioactive peptides from camel whey hydrolysates: Identification, characterization, and molecular interaction

description: This data set and figures represents effect fo various hydrolysis varaibles on CEase and lipase inhibiting potential of camel whey hydrolysates. About 196 peptides generated by camel whey hydrolysis using a factorial design are also mentioned here.
DOI: 10.6084/m9.figshare.14331047.v1
title: Supplementary Material.docx

description: This data set and figures represents effect fo various hydrolysis varaibles on CEase and lipase inhibiting potential of camel whey hydrolysates. About 196 peptides generated by camel whey hydrolysis using a factorial design are also mentioned here.
DOI: 10.2906/101099104097/2
title: Mammalian toxicokinetic database (MamTKDB) 1.0

description: Elimination half-lives in mammals, including humans, have been proposed as a potential complementary metric to expand the assessment of bioaccumulative properties of a substance to cover air-breathing organisms. In order to explore the possibilities of using such data in bioaccumulation assessment and predictions, human and terrestrial mammalian elimination half-life data have been collected along with physiochemical data/parameters. The database will facilitate looking up toxicokinetic data and finding respective studies. This first version of the Mammalian toxicokinetic database (MamTKDB 1.0) contains elimination half-life values for around 1400 substances collected from publications and publicly available studies. The data were collected by Norwegian Institute of Public Health (NIPH) together with European Chemicals Agency (ECHA) in 2016-2020 (Hofer T, Peltola-Thies J, Karamertzanis P, Myhre O, Lantto T, Hirmann D).
DOI: 10.6084/m9.figshare.14436269.v5
title: Additional file of Gene duplications in prokaryotes can be associated with environmental adaptation

description: Additional file of Gene duplications in prokaryotes can be associated with environmental adaptation
DOI: 10.6084/m9.figshare.14436269.v6
title: Additional file of Gene duplications in prokaryotes can be associated with environmental adaptation

description: Additional file of Gene duplications in prokaryotes can be associated with environmental adaptation
DOI: 10.6084/m9.figshare.14436284
title: Additional file 3 of Gene duplications in prokaryotes can be associated with environmental adaptation

description: Additional file 3: Frequency of GO associations. Table S2 shows the complete results for frequent species - GO term associations. (XLS 308 KB)
DOI: 10.6084/m9.figshare.14436284.v1
title: Additional file 3 of Gene duplications in prokaryotes can be associated with environmental adaptation

description: Additional file 3: Frequency of GO associations. Table S2 shows the complete results for frequent species - GO term associations. (XLS 308 KB)
DOI: 10.6084/m9.figshare.14436287
title: Additional file 4 of Gene duplications in prokaryotes can be associated with environmental adaptation

description: Additional file 4: Clusters with a high internal similarity and a large phylogenetic distance. Table S3 shows the clusters from BicAT that have a high internal similarity (computed by G-SESAME) and a large phylogenetic distance (computed by the Kr-algorithm). Also included are COG classifications for these clusters. (XLS 337 KB)
DOI: 10.6084/m9.figshare.14436287.v1
title: Additional file 4 of Gene duplications in prokaryotes can be associated with environmental adaptation

description: Additional file 4: Clusters with a high internal similarity and a large phylogenetic distance. Table S3 shows the clusters from BicAT that have a high internal similarity (computed by G-SESAME) and a large phylogenetic distance (computed by the Kr-algorithm). Also included are COG classifications for these clusters. (XLS 337 KB)
DOI: 10.6084/m9.figshare.14436332.v2
title: Additional file of Gene expression in Pseudomonas aeruginosa swarming motility

description: Additional file of Gene expression in Pseudomonas aeruginosa swarming motility
DOI: 10.6084/m9.figshare.14436332.v3
title: Additional file of Gene expression in Pseudomonas aeruginosa swarming motility

description: Additional file of Gene expression in Pseudomonas aeruginosa swarming motility
DOI: 10.6084/m9.figshare.14436308
title: Additional file 2 of Gene expression in Pseudomonas aeruginosa swarming motility

description: Additional file 2: Differentially expressed genes of tendril tip, swarm center and non-swarming bacterial populations. The complete list of genes differentially regulated in log2 fold-change with a p-value of 0.05 or lower. (XLS 220 KB)
DOI: 10.6084/m9.figshare.14436308.v1
title: Additional file 2 of Gene expression in Pseudomonas aeruginosa swarming motility

description: Additional file 2: Differentially expressed genes of tendril tip, swarm center and non-swarming bacterial populations. The complete list of genes differentially regulated in log2 fold-change with a p-value of 0.05 or lower. (XLS 220 KB)
DOI: 10.6084/m9.figshare.14436311
title: Additional file 3 of Gene expression in Pseudomonas aeruginosa swarming motility

description: Additional file 3: List of primers used in the qRT-PCR experiments. Complete lists of primers used in the qRT-PCR experiments, including primer sequences are shown. (XLS 20 KB)
DOI: 10.6084/m9.figshare.14436311.v1
title: Additional file 3 of Gene expression in Pseudomonas aeruginosa swarming motility

description: Additional file 3: List of primers used in the qRT-PCR experiments. Complete lists of primers used in the qRT-PCR experiments, including primer sequences are shown. (XLS 20 KB)
DOI: 10.5517/ccdc.csd.cc23228k
title: CCDC 1938407: Experimental Crystal Structure Determination

description: Related Article: Paolo P. Mazzeo, Claudia Carraro, Anthea Arns, Paolo Pelagatti, Alessia Bacchi|2020|Cryst.Growth Des.|20|636|doi:10.1021/acs.cgd.9b01052
DOI: 10.6084/m9.figshare.14436365.v2
title: Additional file of Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse

description: Additional file of Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse
DOI: 10.6084/m9.figshare.14436365.v3
title: Additional file of Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse

description: Additional file of Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse
DOI: 10.6084/m9.figshare.14436344
title: Additional file 2 of Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse

description: Additional file 2: This file contains all 5600 genes selected for the network analysis. The genes are identified by EntrezID, gene symbol as well as nuId, an unique identifier for Illumina probes [63]. The module color assignment for each of the three networks is provided for each gene. (CSV 343 KB)
DOI: 10.6084/m9.figshare.14436344.v1
title: Additional file 2 of Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse

description: Additional file 2: This file contains all 5600 genes selected for the network analysis. The genes are identified by EntrezID, gene symbol as well as nuId, an unique identifier for Illumina probes [63]. The module color assignment for each of the three networks is provided for each gene. (CSV 343 KB)
DOI: 10.6084/m9.figshare.14436347
title: Additional file 3 of Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse

description: Additional file 3: This file contains all the GO annotations for the 16 module genes detected in the HS-CC network. (CSV 24 KB)
DOI: 10.6084/m9.figshare.14436347.v1
title: Additional file 3 of Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse

description: Additional file 3: This file contains all the GO annotations for the 16 module genes detected in the HS-CC network. (CSV 24 KB)
DOI: 10.6084/m9.figshare.14436368.v1
title: Additional file of An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

description: Additional file of An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data
DOI: 10.6084/m9.figshare.14436368.v3
title: Additional file of An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

description: Additional file of An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data
DOI: 10.6084/m9.figshare.14436371
title: Additional file 1 of An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

description: Additional file 1: Aspergillus niger centred majority rule based classifier for signal peptide prediction validation. A. niger centred orthologous protein clusters included in the classifier were selected for the presence of at least one putative SP protein. (XLS 315 KB)
DOI: 10.6084/m9.figshare.14436377.v1
title: Additional file 3 of An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

description: Additional file 3: Aspergillus niger proteins detected by high-throughput mass spectrometry of secretome enriched fractions cultured under a set of controlled conditions(XLS 264 KB)
DOI: 10.6084/m9.figshare.14436371.v1
title: Additional file 1 of An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

description: Additional file 1: Aspergillus niger centred majority rule based classifier for signal peptide prediction validation. A. niger centred orthologous protein clusters included in the classifier were selected for the presence of at least one putative SP protein. (XLS 315 KB)
DOI: 10.6084/m9.figshare.14436377
title: Additional file 3 of An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

description: Additional file 3: Aspergillus niger proteins detected by high-throughput mass spectrometry of secretome enriched fractions cultured under a set of controlled conditions(XLS 264 KB)
DOI: 10.6084/m9.figshare.14436425.v4
title: Additional file of Differential gene expression during the moult cycle of Antarctic krill (Euphausia superba)

description: Additional file of Differential gene expression during the moult cycle of Antarctic krill (Euphausia superba)
DOI: 10.6084/m9.figshare.14436437
title: Additional file 1 of Differential gene expression during the moult cycle of Antarctic krill (Euphausia superba)

description: Additional file 1: All transcripts differentially expressed more than twofold (p &lt; 0.05) relative to C early in each moult cluster group. Each sheet in the file lists transcripts that were differentially expressed more than twofold (B&H adjusted p &lt; 0.05) relative to C early for each moult cluster group. Each transcript is listed with GenBank accession number, contig/singleton identifier, top BLAST (E &lt; 1e-5) description (tBLASTX hits are underlined, all others are BLASTX), E value of the BLAST hit, Gene Ontology identifiers (C = cellular component, F = molecular function, P = biological process), Pfam protein domain (E &lt; 1e-5), fold change (with inverted fold change for down regulated transcripts) and false discovery rate adjusted p value. (XLS 272 KB)
DOI: 10.6084/m9.figshare.14436437.v1
title: Additional file 1 of Differential gene expression during the moult cycle of Antarctic krill (Euphausia superba)

description: Additional file 1: All transcripts differentially expressed more than twofold (p &lt; 0.05) relative to C early in each moult cluster group. Each sheet in the file lists transcripts that were differentially expressed more than twofold (B&H adjusted p &lt; 0.05) relative to C early for each moult cluster group. Each transcript is listed with GenBank accession number, contig/singleton identifier, top BLAST (E &lt; 1e-5) description (tBLASTX hits are underlined, all others are BLASTX), E value of the BLAST hit, Gene Ontology identifiers (C = cellular component, F = molecular function, P = biological process), Pfam protein domain (E &lt; 1e-5), fold change (with inverted fold change for down regulated transcripts) and false discovery rate adjusted p value. (XLS 272 KB)
DOI: 10.6084/m9.figshare.14436494.v1
title: Additional file of ProFITS of maize: a database of protein families involved in the transduction of signalling in the maize genome

description: Additional file of ProFITS of maize: a database of protein families involved in the transduction of signalling in the maize genome
DOI: 10.6084/m9.figshare.14436500
title: Additional file 1 of ProFITS of maize: a database of protein families involved in the transduction of signalling in the maize genome

description: Additional file 1: Classification rules in ProFITS. Detailed classification rules including a modified PPC criterion which is intended to gather all the protein-phosphorylation-related genes into one category. (XLS 36 KB)
DOI: 10.6084/m9.figshare.14436500.v1
title: Additional file 1 of ProFITS of maize: a database of protein families involved in the transduction of signalling in the maize genome

description: Additional file 1: Classification rules in ProFITS. Detailed classification rules including a modified PPC criterion which is intended to gather all the protein-phosphorylation-related genes into one category. (XLS 36 KB)
DOI: 10.6084/m9.figshare.14436518.v1
title: Additional file of Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

description: Additional file of Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress
DOI: 10.6084/m9.figshare.14436518.v4
title: Additional file of Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

description: Additional file of Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress
DOI: 10.6084/m9.figshare.14436521
title: Additional file 1 of Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

description: Additional file 1: Supplementary Table 1 - Gene expression data of 14 profiles. The microarray data after quantile normalization are presented. The value of "0" indicates data which could not be quantified due to its low expression level. (XLS 1 MB)
DOI: 10.6084/m9.figshare.14436521.v1
title: Additional file 1 of Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

description: Additional file 1: Supplementary Table 1 - Gene expression data of 14 profiles. The microarray data after quantile normalization are presented. The value of "0" indicates data which could not be quantified due to its low expression level. (XLS 1 MB)
DOI: 10.6084/m9.figshare.14436530.v1
title: Additional file 4 of Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

description: Additional file 4: Supplementary Table 2 - Gene expression data of Fur, NrdR, OxyR regulon members. The expression data of Fur, NrdR, OxyR regulon members are presented in the same order as shown in Figure 3 and Fig. S2. (XLS 42 KB)
DOI: 10.6084/m9.figshare.14436530
title: Additional file 4 of Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

description: Additional file 4: Supplementary Table 2 - Gene expression data of Fur, NrdR, OxyR regulon members. The expression data of Fur, NrdR, OxyR regulon members are presented in the same order as shown in Figure 3 and Fig. S2. (XLS 42 KB)
DOI: 10.6073/pasta/8af5a08a7f8e25a007c393c0c9a87bc4
title: Leaf Area Index at Harvard Forest HEM and LPH Towers since 1998

description: Leaf area index (LAI) measurements are made to detect changes in forest leaf area that are important in understanding forests’ carbon dioxide (CO2) uptake and water use. Measurements of LAI in different forest types are useful understanding differences between forests in CO2 uptake and water use, while variation in LAI in the same forest type over time helps to explain interannual variation and long-term trends in carbon storage and water use. Within a single year, especially for deciduous forests, seasonal changes in LAI are very important in determining the forest’s cycle of CO2 uptake and water use. LAI measurements at Harvard Forest were begun in the old-growth hemlock stand in 1998 in order to understand and develop a predictive model for its carbon exchange, and were begun at the Little Prospect Hill site in 2002 to better understand CO2 uptake and carbon storage at this site, which were measured by the eddy-covariance method beginning in 2002. Due to a lack of personnel, multiple annual measurements of LAI to examine seasonal change in leaf area did not begin until 2007.
DOI: 10.6084/m9.figshare.14436548.v8
title: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor
DOI: 10.6084/m9.figshare.14436548.v9
title: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor
DOI: 10.6084/m9.figshare.14436548.v10
title: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor
DOI: 10.6084/m9.figshare.14436548.v11
title: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor
DOI: 10.6084/m9.figshare.14436548.v12
title: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor
DOI: 10.6084/m9.figshare.14436548.v13
title: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor
DOI: 10.6084/m9.figshare.14436548.v14
title: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor
DOI: 10.6084/m9.figshare.14436572
title: Additional file 1 of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file 1: Conserved pairs. Column 1 and 2 contain the pair of genes, column 3 the probability, and column 4 the number of genomes in which the pair is conserved. (CSV 13 KB)
DOI: 10.6084/m9.figshare.14436575
title: Additional file 2 of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file 2: Training set. Column 1 and 2 contain the pair of genes, and column 3 its status as KOP or NOP. (CSV 11 KB)
DOI: 10.6084/m9.figshare.14436572.v1
title: Additional file 1 of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file 1: Conserved pairs. Column 1 and 2 contain the pair of genes, column 3 the probability, and column 4 the number of genomes in which the pair is conserved. (CSV 13 KB)
DOI: 10.6084/m9.figshare.14436575.v1
title: Additional file 2 of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file 2: Training set. Column 1 and 2 contain the pair of genes, and column 3 its status as KOP or NOP. (CSV 11 KB)
DOI: 10.6084/m9.figshare.14436578
title: Additional file 3 of Genome-wide inference of regulatory networks in Streptomyces coelicolor

description: Additional file 3: Operon predictions. Column 1 contains genes, and column 2 contains the operon into which the gene was predicted. (CSV 105 KB)