cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.17gk0/1
title: Genotypes v1

description: Microsatellite genotypes from 81 cattle populations typed with 19 markers. British and Continental European; Blue: Indian Zebu. SPANISH. Betizu (BET), Toro de Lidia (TL), Menorquina (MEN), Alistana (ALS), Sayaguesa (SAY), Tudanca (TUD), Asturiana de los Valles (ASV), Asturiana de las Montañas (ASM), Retinta (RET), Morucha (MOR), Avileña (AVI), Pirenaica (PIRM), Rubia Gallega (RGA), Mallorquina (MALL), Monchina (MON), Serrana de Teruel (STE), Parda de Montaña (PM), Bruna de los Pirineos (BRP), Pasiega (PAS), Berrenda en Colorado (BC), Berrenda en Negro (BN), Marismeña (MAR), Pajuna (PAJ), Negra Andaluza (NAN), Vaca Canaria (VCA), Vaca Palmera (PAL); PORTUGUESE. Alentejana (ALT), Arouquesa (ARO), Barrosã (BARR), Brava de Lide (BRAV), Cachena (CACH), Garvonesa (GARV), Marinhoa (MARI), Maronesa (MARO), Mertolenga (MERT), Minhota (MINH), Mirandesa (MIRA), Preta (PRET), Ramo Grande (RG); CREOLE. Guabalá (GUA), Guaymí (GY), Texas Longhorn (TLH), Criollo Poblano (CPO), Criollo de Baja California (CBC), Criollo de Chihuahua (CHU), Criollo de Nayarit (CNY), Criollo de Chiapas (CHI), Blanco Orejinegro (BON), Caqueteño (CAQ), Sanmartinero (SM), Romosinuano (RMS), Costeño con Cuernos (CCC), Chino Santandereano (CH), Velasquez (VEL), Lucerna (LUC), Hartón del Valle (HV), Criollo Casanareño (CC), Criollo Ecuatoriano (EC), Criollo Uruguayo (CUR), Pampa Chaqueño (PA), Criollo Pilcomayo (PIL), Criollo Argentino (CARG), Criollo Patagónico (PAT), Caracú (CAR), Cubano (CUB), Siboney (SIB); ZEBU: Gyr (GYR), Brahman (BRH), Sindi (SIN), Guzerat (GUZ), Nelore (NEL), Zebu Cubano (CUZ); Other EUROPEAN. Friesian (FRI), Hereford (HER), Brown Swiss (BSW), Aberdeen Angus (AA), British White (BWC), Charolais (CHAR), Jersey (JER), Limousin (LIM), Shorthorn (SH).
DOI: 10.5061/dryad.17gk0/2
title: Alele frequencies
DOI: 10.5061/dryad.1cd80/1
title: data_fig1

description: Occurence data of Dipteryx alata used to Species Distribution Modeling
DOI: 10.5061/dryad.1jp26/2
title: Hufbauer_etal_bemisia_manip2

description: These data correspond to the second experiment described in the paper - fully factorial with host plant, genetic background, and founding population size. Column headings are: number (identifier of the experimental unit), size (16 or 4), plant (tobacco or cabbage), breeding (inbred or outbred), success_larvae (were larvae produced, 1 or 0), success_adults (were adults produced, 1 or 0), larvae (number of), growthratelarv (larvae/size), adults (numbers of adults), R (adults/size, the net reproductive rate), devtime (development time in days), larval survival (proportion of larvae that reached adulthood), presence of females (1, 0)
DOI: 10.5061/dryad.25sg7/1
title: Data for Costly Infedility in Evolution

description: This is the data file included the data used in the article "Costly infidelity: Low lifetime fitness of extra-pair offspring in a passerine bird" in Evolution
DOI: 10.5061/dryad.2k5rf/1
title: Alignment files and trees

description: The file contains all bacterial and archaeal amoA aligned sequences, gblocks trimmed alignments and resulting tree files from doi:10.1371/journal.pone.0047330
DOI: 10.5061/dryad.2tg68/1
title: MarschalekBerres_JHered_Data

description: AFLP data
DOI: 10.5061/dryad.43160/1
title: Chirleja_mtSSU

description: A zipped archive containing the Pertusariales mtSSU nucleotide alignment file analyzed to determine the phylogenetic placement of Chirleja buckii along with various specific input and output files for different types of phylogenetic inference methods.
DOI: 10.5061/dryad.47hc8/4
title: Etosha lion microsat data revised

description: File includes lion ID numbers in columns 1 and 2, and microsatellite genotypes for 14 primers beginning in column 3. Primer numbers are listed in row 1 starting in column 3.
DOI: 10.5061/dryad.52n61/1
title: Van Dyke et al data
DOI: 10.5061/dryad.558pm/1
title: dryad2 Genoa police stress personality & mental health

description: Data collected in the field on police officers of the VI Reparto Mobile of Genoa in 2009. File: SPSS 11.5
DOI: 10.5061/dryad.5jn04/1
title: genotype

description: This file contains the genotype data of 788 tea accessions used in this study.
DOI: 10.5061/dryad.5mh88/2
title: Doumayrou et al_Arabidopsis_thaliana_data

description: This data file contains mortality measures and proxy data (i.e. mortality rate, reduction of leaf area and visual qualitative symptoms) of nine natural isolates of Cauliflower mosaic virus infecting Arabidopsis thaliana to study the effect of CaMV infection on A. thaliana and the relationship between the mortality rate and different proxies discussed in the manuscript.
DOI: 10.5061/dryad.5sq45/2
title: gravid_females

description: Includes data from gravid females collected concurrently with nests to allow estimate of relationship between female liver isotopes and egg isotopes. Each row represents one gravid female collected. See read me file for information on column identity.
DOI: 10.5061/dryad.62294/2
title: Cockburn_etal_All_Data

description: This workbook contains three sheets: 1) experimental data measuring the effects of eastern and western Spiroplasma strains on Howardula parasitism and 2 & 3) Mitochondrial haplotypes of wild Drosophila neotestacea collected in central and western Canada.
DOI: 10.5061/dryad.64s2v/2
title: Maximum Clade Credibility tree of plastid sequences from Edraianthus_graminifolius

description: Maximum Clade Credibility tree of plastid sequences from Edraianthus_graminifolius (trnGUCC intron to trnGUCC-trnRUCU intergenic spacer, rpl32-trnLUAG intergenic spacer, and trnTUGU- trnLUAA-trnFGAA intergenic spacers) obtained with the software BEAST
DOI: 10.5061/dryad.64s2v/3
title: Alignment of plastid DNA sequences obtained from Edraianthus graminifolius with coded gaps

description: Alignment of plastid DNA sequences (trnGUCC intron to trnGUCC-trnRUCU intergenic spacer, rpl32-trnLUAG intergenic spacer, and trnTUGU- trnLUAA-trnFGAA intergenic spacers) obtained from Edraianthus graminifolius with coded gaps
DOI: 10.5061/dryad.64s2v/4
title: Unmodified alignment of plastid DNA sequences from Edraianthus graminifolius (without gap coding)

description: Unmodified alignment of plastid DNA sequences (trnGUCC intron to trnGUCC-trnRUCU intergenic spacer, rpl32-trnLUAG intergenic spacer, and trnTUGU- trnLUAA-trnFGAA intergenic spacers) from Edraianthus graminifolius (without gap coding)
DOI: 10.5061/dryad.64s2v/5
title: Table for translating population numbers used in the sequence alignments and the MCC treefile into the population numbers used in the paper, the AFLP matrix and in GenBank

description: Table for translating population numbers used in the sequence alignments and the MCC treefile into the population numbers used in the paper, the AFLP matrix and in GenBank
DOI: 10.5061/dryad.6h822/13
title: Figure_5_Tank8(A26A)

description: Paternity analysis for Tank 8 (A26A). Study Day indicates the day on which each embryo analysed was spawned. The first 3 rows in the table are the parent fish and below that are the 20 selected offspring. The microsatellite loci used for analysis are listed along the top of the table and corresponding allelles are detailed below.
DOI: 10.5061/dryad.6q3t1/5
title: 5_IMa2_inputfile_Psundbergi

description: input file for Ima2 inference within P. sundbergi
DOI: 10.5061/dryad.75nv22qj/15
title: turtles-computer-code-README

description: README describing source of computer code and snapshot of code used to analyze these data.
DOI: 10.5061/dryad.75nv22qj/16
title: turtles-individual-nexus-files-for-no-snake.tar.bz2

description: NEXUS alignment files for all taxa (DROPPING SNAKE) for additional analysis requested by referee.
DOI: 10.5061/dryad.75nv22qj/17
title: turtles-mrbayes-substitution-models-from-mraic-no-snake.tar.bz2

description: MRAIC substitution models estimated for NEXUS alignment (DROPPING SNAKE) for analysis requested by referee.
DOI: 10.5061/dryad.75nv22qj/18
title: turtles-mrbayes-concatenated-nexus-file-no-snake.nex.bz2

description: MRBAYES input file built from partitioning no-snake loci by substitution models (in turtles-mrbayes-substitution-models-from-mraic-no-snake.tar.bz2) and concatenating loci (in turtles-individual-nexus-files-for-no-snake.tar.bz2).
DOI: 10.5061/dryad.75nv22qj/19
title: turtles-mrbayes-thin-100-output-no-snake.tar.bz2

description: MRBAYES output following 5,000,000 iterations (thin=100) after inputting turtles-mrbayes-concatenated-nexus-file-no-snake.nex.bz2.
DOI: 10.5061/dryad.75nv22qj/22
title: turtles-genetrees-no-snake-1000-bootreps-from-cloudforest.bz2

description: Genetree bootstrap replicates generated from the data in turtles-individual-nexus-files-for-loci.tar.bz2, dropping snake, using Cloudforest (map-reduce Phybase).
DOI: 10.5061/dryad.85cb4/1
title: tree_basal_area_rel_abundance.csv
DOI: 10.5061/dryad.87k57/1
title: Supplementary Material

description: Supplementary figures S1-S5
DOI: 10.5061/dryad.9h6h8/2
title: Supplementary_material.tar.bz2

description: This supplementary material contains three files: 1 - a README file, with further details about the other two files. 2 - Rokas_2.phy (an alignment of a data set used to illustrate the methods). 3 - Yeast_tree.nwk (the corresponding tree used to illustrate the methods).
DOI: 10.5061/dryad.9pq70/4
title: Supporting Information
DOI: 10.5061/dryad.9t57q/5
title: Thalassoma_bifasciatum

description: Thalassoma bifasciatum microsatellite genotypes
DOI: 10.5061/dryad.bq64j/1
title: Whoel cell MALDI-TOF mass spectra of Escherichia coli isolates
DOI: 10.5061/dryad.g1s47/1
title: Inversion and noninversion marker data

description: Data from 16 markers, 8 located within the DIV1 inversion on linkage group 8, and 8 distributed throughout the Mimulus genome, formatted for Genalex.
DOI: 10.5061/dryad.g1s47/2
title: WorldClimAndMorphologicalData

description: 19 Worldclim variables collected for each of 120 accessions in the Mimulus guttatus species complex. Morphological and flowering time data collected for 120 accessions grown together under 16-hour days.
DOI: 10.5061/dryad.g3p4h/1
title: Data of Winner Loser effects in Eupelmus vuilleti

description: Data concerning the following paper, accepted in The American Naturalist (#53493): Prior experience and contest outcome: Winner effects persist in absence of evident loser effects in a parasitoid wasp. Marlène Goubault & Marie Decuignière, Institut de recherche sur la biologie de l’insecte, UMR CNRS 6035, Université François Rabelais de Tours, 37200 Tours, France. marlene.goubault@univ-tours.fr
DOI: 10.5061/dryad.g52m3/2
title: 1.Running Stacks

description: Contains scripts and part of the output data of running *Stacks* with the demultiplexed-lane-effect-corrected data (see section **Demultiplexing and dropbase/0.1DropBase** of this repository) available at the Sequence Read Archive (SRA), accession SRP035472; to subsequently produce SNP (*.SNP) and coverage (*.COV) tsv matrices and to run the *populations* program of Stacks with the selected loci of the downstream analyses. The Stacks parameter values corresponds to the experiments defined as *1) Exploratory analysis of Stacks assembly key parameters and SNP calling model using replicates* and *2) Effect of using different parameters on the output information content and on the detection of genetic structuring*
DOI: 10.5061/dryad.g52m3/3
title: 2.R analyses of Stacks outputs

description: Contains the R scripts, input-output data and metainformation used to perform the analyses described in the *General processing of Stacks outputs* and  *Error rates* of the manuscript.
DOI: 10.5061/dryad.g52m3/5
title: Sampling localities

description: Cointains and the geographic information of sampling sites. See tab "B.alpina B.moranensis" for Berberis alpina and B. moranensis populations and "Berberis outgroups" for B. trifolia and B. pallida
DOI: 10.5061/dryad.g52m3/7
title: Lab protocol and sequencing report

description: Contains: i) a summary of the ddRAD labwork, description of final libraries and sequencing output, ii) modified ddRAD sequencing protocol and iii) sequencing quality control reports for each lane.
DOI: 10.5061/dryad.h6q26/2
title: Data_females

description: Excel version of table 1 (females) in our paper. Data was originally published in Baker, R. H. and G. S. Wilkinson. 2001. Phylogenetic analysis of sexual dimorphism and eye-span allometry in stalk-eyed flies (Diopsidae). Evolution 55: 1373-1385.
DOI: 10.5061/dryad.k43k4/1
title: Oke et al._dryad data

description: Growth and survival data for Oke et al.
DOI: 10.5061/dryad.kc6m8/10
title: Lab Data for Tni TotGS BCratio histogram
DOI: 10.5061/dryad.kc6m8/2
title: BCMA fine mapping
DOI: 10.5061/dryad.kc6m8/6
title: CO manipulative
DOI: 10.5061/dryad.kc6m8/7
title: GS transgenics
DOI: 10.5061/dryad.kc6m8/8
title: Lab Boechera_East GS
DOI: 10.5061/dryad.kc6m8/9
title: Lab Boechera_East Tni
DOI: 10.5061/dryad.kn543/1
title: rfid_analysis_file

description: These data were collected in Ithaca, NY using a network of RFID-enabled supplemental feeding stations. Passive integrated transponders were attached to individual birds. See README file for more details.
DOI: 10.5061/dryad.m1r32/1
title: Histograms of posterior probabilities for splitting the clades by BPP

description: Histograms of posterior probabilities for splitting the clades by BPP
DOI: 10.5061/dryad.m966q/1
title: Type localities

description: Map of the type localities of the two new species of Isotomiella
DOI: 10.5061/dryad.nr353/1
title: Generalization-Host

description: This is the primary generalization and mining script.
DOI: 10.5061/dryad.r2b1h/1
title: Computer Tomography data for Proteles cristata, J050607T02

description: CT image data (DICOM format) of Proteles cristata scanned at University of California, Los Angeles Medical Center using Siemens Definition 64 CT scanner on 26 October 2007.
DOI: 10.5061/dryad.r8n7c/1
title: Sampling localities

description: Sampling localities of contemporary and historical specimens, including museum identifiers.
DOI: 10.5061/dryad.r8n7c/11
title: Contemporary COI alignment
DOI: 10.5061/dryad.r8n7c/3
title: Microsatellite data
DOI: 10.5061/dryad.r8n7c/6
title: Prosoma width

description: Prosoma width of contemporary and historical specimens
DOI: 10.5061/dryad.r8n7c/8
title: Temperature preference & tolerance

description: Data from temperature preference and heat tolerance experiments
DOI: 10.5061/dryad.r8n7c/9
title: Alignment of complete historical COI sequences
DOI: 10.5061/dryad.rr65n/13
title: Data and phylogenetic tree for the Bayesian analysis of H. erato in region 2 of the red pattern interval

description: Includes region 2 of 5 separate partitions of the red pattern interval based on optimal tree partitioning from the MDL method. Includes the SNPs from Bases 324,666 to 474,310, the Bayes block that went into the analysis, and the resulting Bayesian consensus tree.
DOI: 10.5061/dryad.sd931/1
title: Embryo_placenta_weights

description: These data include the weights of all embryos and placentas as well as other birth defects. These data are in 15 columns: 1. ID: unique Identification number for each individual. In the form BB.BB1.1, the first two letters are the mother's species (BB=P. campbelli, SS=P. sungorus). The second two letters are the father's species. Thus hybrids are designated BB.SS or SS.BB. The first number is the unique litter number and the final number is the individual in that litter.  2. Cross: the unique cross identification number, or the cross each individual was from. 3. Date: date that the mother was sacrificed and the dissection was done. 4. Age: the approximate age that the embryos were in development. day 15-18 are considered "late development". 5. Reabsorbing: 0 if not reabsorbing, 1 if reabsorbing. 6. molar conceptus: 0 if not a molar conceptus, 1 if a molar conceptus. 7. edema: 0 if no edema, 1 if edema was present. 8. photo number: the photo name. 9. gender: sex if known. 10: Genes: a description of pure P. campbelli (BB.BB), pure P. sungorus (SS.SS) or the F1 P. campbelli x P. sungorus (BB.SS). 11: Embryo: embryo weight in grams. 12: Placenta: placenta weight in grams. 13: Individual: the individual in the litter. 14: Mother: mother's unique identification number. 15: Father: father's un ique identification number.
DOI: 10.5061/dryad.sd931/2
title: Breeding_success

description: These data are the reproductive output of different crosses. These data are in 4 columns: 1. cross.number: in the form "BB.BB1" Letters represent species ( B=P. campbelli, S=P. sungorus ). The first two letters are the mother's species, the second two letters are the father's species. Further, each unique litter is given a number. 2. mother.number: the unique identification number of the mother. 3. days.to.birth: number of days from crossing to a successful birth. 4. success.preg: 1 if the female gave birth in the first 40 days, 0 if she did not give birth in the first 40 days
DOI: 10.5061/dryad.sd931/3
title: 10_day_weights

description: Data for assessing standard growth curves of hamsters from day 10 to day 100. This file includes 5 columns: 1. cross.number: in the form "BB.BB1" Letters represent species ( B=P. campbelli, S=P. sungorus ). The first two letters are the mother's species, the second two letters are the father's species. Further, each unique litter is given a number. Apparent duplicates are due to multiple offspring born to each litter which were not uniquely identified. 2. genes: a description of pure P. campbelli (BB.BB), pure P. sungorus (SS.SS) or the F1 P. campbelli x P. sungorus (BB.SS) 3. age.day: the age each individual was when weighed 4. weight.g: the weight in grams of each individual 5. sex: the gender of each individual. Unknown for young individuals.
DOI: 10.5061/dryad.sd931/4
title: Hamster_database

description: Data concerning crossing dates and number of offspring used to assess sex ratio. Data are in 7 columns: 1. cross number: in the form "BB.BB1" Letters represent species ( B=P. campbelli, S=P. sungorus ). The first two letters are the mother's species, the second two letters are the father's species. Further, each unique litter is given a number. 2. mother.number: mother's unique identification number. 3. father.number: father's unique identification number. 4. birthdate: when the litter was born. 5. female.number: number of female offspring in the litter. 6. male.number: number of male offspring in the litter. 7. total.litter.number: sum of males and females in the litter
DOI: 10.5061/dryad.sd931/5
title: Raw images

description: These are the photos of every embryo and placenta referenced in the Embryo_Placenta_Weights file
DOI: 10.5061/dryad.v22n5/1
title: Microsatellite data and population designations

description: genotypes.csv provides genotypes for 12 nuclear microsatellite markers described in the main textAbbreviations: Bruce Peninsula, BP; Lyal, Lyal Island; NPS, North of Parry Sound; SPS, South of Parry Sound; Georgian Bay Islands (Beausoleil Island), GBI; -9 indicates non-amplified productPlease contact michelle.dileo@gmail.com with any questions about this dataset.
DOI: 10.5061/dryad.v22n5/2
title: Circuitscape Input Files

description: This .zip includes two folders of Circuitscape input files: BP for the Bruce Peninsula, and EGB for eastern Georgian Bay. Res_x files are the resistance surfaces used to calculate pairwise resistances in Circuitscape and correspond to the models described in Table 1 of the main text. Please contact michelle.dileo@gmail.com for focal points input files.
DOI: 10.5061/dryad.v22n5/3
title: CDPOP Input Files

description: This .zip includes CDPOP 1.0 input files for Simulation Set 1 (implementation of a road onto an otherwise neutral landscape) and Simulation Set 2 (simulations across our empirical landscape south of Parry Sound). The full set of parameters is described in the main text.
DOI: 10.5061/dryad.07s25/2
title: phenology

description: Phenological data measured in the greenhouse experiment. Number: Line number. Block: Experimental block. Treatment: Simulated Fall and Spring treatments. Tray: Number of the 66-well trays in which plant grew. Line and Column: Coordinates of the plants in the 66-well trays the plants were grown in. Type: French_stand: 49 natural stands of this study, accessions; worldwide and French accessions. Region: Four regions of France where stands have been sampled. Stand: Name of stands. For accessions, numbers correspond to the accession_ID used for GWA mapping (see Table S1.B). Name: Individual family or accession name. BT: Bolting time. FT: Flowering time. INT: Interval between bolting and flowering. FP: Flowering period. RP: Reproductive Period. FRR: Ration between flowering and reproductive reproductive period.
DOI: 10.5061/dryad.07s25/3
title: genotypes of the french families

description: Genotypes for the french families used in this study. The column "sample" corresponds to families from the french populations. "." stands for missing data. Heterozygotes are coded as follow: W for AT, M for AC, R for AG, Y for TC, K for TG and S for CG.
DOI: 10.5061/dryad.157tp/1
title: Dryad_granulifera_predation

description: Attacks by birds, lizards, crabs, mammals, and unknown predators of clay models of O. granulifera of three phenotypes. 300 models of each phenotype were placed in four populations along the South Western lowlands of Costa Rica and inspected for predation marks after 72 h. Identification of predators was conducted by comparing the marks on the clay with models attacked by predators identified with trap-cameras.
DOI: 10.5061/dryad.178cf/1
title: Santana-Garcon_etal_MEE-rawdata

description: Abundance and length data sampled using pelagic stereo-BRUVs and scientific longline surveys along a latitudinal gradient off the coast of Western Australia.
DOI: 10.5061/dryad.28bp3/1
title: Datasets and R script

description: This zip file contains the datasets as .csv files and an R script for statistical analyses.
DOI: 10.5061/dryad.2f1k3/13
title: Anas crecca Structure infile.txt

description: File containing genotypic information for 8 nuclear loci sampled from 25 Anas crecca crecca and 25 Anas crecca carolinensis. This file is formatted for STRUCTURE analyses.
DOI: 10.5061/dryad.2f1k3/2
title: Anas crecca CHD1Z alleles.fas

description: FASTA file containing 78 resolved alleles from intron 19 of the chromo-helicase DNA binding (CHD1Z) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 45 alleles were sampled from Eurasia, and the next 33 were sampled from North America. Note that CHD1Z is located on the Z-chromosome, and therefore, females only have a single copy.
DOI: 10.5061/dryad.2f1k3/6
title: Anas crecca GRIN1 alleles.fas

description: FASTA file containing 100 resolved alleles from intron 11 of the N-methyl D-aspartate 1 glutamate receptor (GRIN1) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 50 alleles were sampled from Eurasia, and the next 50 were sampled from North America.
DOI: 10.5061/dryad.2g12q/1
title: locomotor recovery_original
DOI: 10.5061/dryad.3mt58823/2
title: Individual Gene Alignments

description: A compressed file containing the 12 nuclear and one mitochondrial data sets. Each gene is aligned as used in the original study and is presented in NEXUS format.
DOI: 10.5061/dryad.4gv88/1
title: Olori_12031__Supplement_R

description: This file includes data tables of observations made directly from museum specimens, as well as appendices containing data resulting from Ontogenetic Sequence Analysis (OSA).
DOI: 10.5061/dryad.4tf74/1
title: Mallard_metadata Text_MEC-12-0355.R1
DOI: 10.5061/dryad.64jk6/1
title: Thompson_DataDryad_Genotypes_Q.lobata_Q.agrifolia

description: Multi-locus genotypes for adults and pericarps from two years, of two oak species (sheet 1 is Quercus lobata, sheet 2 is Quercus agrifolia). Locations in decimal degrees follow the genotypes of adults on each sheet.
DOI: 10.5061/dryad.6r42r366/6
title: Baamrane_ITAPoa_filtered_data