cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1202230.v9
title: Research Data Management Technical Infrastructure: A Review of Options for Development at the University of Sheffield

description: This report reviews the options available for the development of a technical infrastructure to support research data management (RDM) at the University of Sheffield. RDM, its situation within academic research and recent drivers towards change are defined. The processes involved in RDM and the elements of the supporting technical infrastructure are examined. The local context, of RDM technical infrastructure at the University of Sheffield and collaborating institutions, is explored. The report briefly describes the eighty most commonly used components of RDM technical infrastructure at UK HEIs. The report describes evaluations, reviews and comparisons of these components, gives examples of established RDM services and highlights the recent projects at UK HEIs which were involved in developing these services. This report focuses on the outcomes of projects at UK HEIs funded by the JISC ‘Managing Research Data’ programmes 2009-11 and 2011-2013. Generally the infrastructure architectures examined have been developed in response to the functional requirements derived from researcher workflows. Finally, recommendations for suitable technical infrastructure components are proposed. This is an updated version (2.4) of the document at http://dx.doi.org/10.6084/m9.figshare.1092561
DOI: 10.6084/m9.figshare.13720708.v1
title: Supplementary Material for: The Diagnostic Yield of Prenatal Genetic Technologies in Congenital Heart Disease: A Prospective Cohort Study

description: <b><i>Introduction:</i></b> The objective was to evaluate: (i) the proportion of prenatally diagnosed congenital heart disease (CHD) associated with an abnormal quantitative fluorescence-PCR (QF-PCR), chromosome microarray (CMA), and exome sequencing (ES) result; and (ii) the diagnostic yield of these technologies based on CHD category and presence of extra-cardiac anomalies (ECAs). <b><i>Methods:</i></b> This prospective cohort study was set across 12 UK foetal medicine centres. All cases underwent QF-PCR, CMA, and ES, and the diagnostic yield in <i>n</i> = 147 cases of prenatally diagnosed CHD was assessed. <b><i>Results:</i></b> In 34.7% (<i>n</i> = 51/147), a genetic diagnosis was obtained. Using a stepwise testing strategy, the diagnostic yield for QF-PCR, CMA, and ES was 15.6% (<i>n</i> = 23/147), 13.7% (<i>n</i> = 17/124), and 10.2% (<i>n</i> = 11/107), respectively. Abnormal QF-PCR/shunt (septal) defects 31.4% (<i>n</i> = 11/35), <i>p</i> = 0.046, and abnormal CMA/conotruncal anomalies 22.7% (<i>n</i> = 10/44), <i>p</i> = 0.04, had significant associations. Monogenic variants were commonest in complex CHD 36.4% (<i>n</i> = 4/11). Multisystem CHD had a greater diagnostic yield overall compared to isolated OR 2.41 (95% CI, 1.1–5.1), particularly in association with brain and gastrointestinal tract anomalies. The proportion of variants of uncertain significance was 4.7% (<i>n</i> = 5/107) with ES, with none in the CMA group. <b><i>Conclusion:</i></b> In the era of prenatal ES, there remains an important role for QF-PCR and CMA. Identification of monogenic pathologic variants further allows delineation of prognosis in CHD.
DOI: 10.6084/m9.figshare.23616810.v1
title: The impact of social media use on adolescent development and functioning – A South African perspective

description: The findings of the study indicated that adolescent social media use affected growth and development within all the ecological systems of the participants. Participants were also affected in terms of their biological development (i.e., physical, cognitive, emotional, social, moral as well as their identity development). Numerous safety concerns and risks that exist for young individuals who are growing up in an era where social media and ICTs cannot be avoided was evident, leading to the recommendations that were made for professionals that work with the development and treatment of this vulnerable population group. The recommendations that were suggested for professionals, relevant organisations, families and communities to adopt and follow can make a difference to safeguard children and adolescents from the harmful effects that social media use can hold for all consumers and assist them to reap the benefits that such platforms can provide.
DOI: 10.6084/m9.figshare.28112981.v1
title: Urine Classifier

description: A custom machine learning algorithm designed for nanopore based urine analysis.
DOI: 10.6084/m9.figshare.29043041.v2
title: Heat budget model data

description: Output of heat budget model for limpets at one site (Omihi) on the north east coast of New Zealand's South Island. Limpet body temperatures were predicted using meterological data combined with high-resolution digital surface models to look at the effect of fine-scale topographic variability on body temperatures.
DOI: 10.6084/m9.figshare.3987267.v1
title: A gravity-derived Moho model for South America: source code, data, and model results from "Fast non-linear gravity inversion in spherical coordinates with application to the South American Moho"

description: Published in the Geophysical Journal International: https://doi.org/10.1093/gji/ggw390<br><br>The gravity-derived Moho model for South America is in file model/south-american-moho.txt<br>The image file "south-american-moho.png" is a preview of the model along side the differences between our model and the seismological estimates of Assumpção et al. (2013, http://dx.doi.org/10.1016/j.tecto.2012.11.014). In this figure, dotted lines represent the boundaries between major geologic provinces. AD: Andean Province, AFB: Andean foreland basins, AM: Amazonas Basin, BR: Brazilian Shield, BO: Borborema province, CH: Chaco Basin, GB: Guyana Basin, GU: Guyana Shield, PB: Parnaíba Basin, PC: Parecis Basin, PR: Paraná Basin, PT: Patagonia province, SF: São Francisco Craton, SM: Solimões Basin. Solid orange lines mark the limits of the main lithospheric plates. AF: Africa Plate, AN: Antarctica Plate, CA: Caribbean Plate, CO: Cocos Plate, SA: South America Plate, SC: Scotia Plate, NZ: Nazca Plate. The solid light grey line is the 35 km Moho depth contour.<br>This is snapshot of the git repository hosted on Github: https://github.com/pinga-lab/paper-moho-inversion-tesseroids<br>See file README.md for information about running the code and reproducing the rests.<br>An open-access postprint PDF of the article can be found at:https://doi.org/10.31223/osf.io/9ba4m<br>All source code is available under the BSD 3-clause license (see LICENSE.md). The model results in file model/south-american-moho.txt are available under the Creative Commons Attribution 4.0 License (CC-BY).
DOI: 10.17632/t8twgb2k2k
title: Data for: Sustainable Development Goal Indicators: Analyzing Trade-offs and Complementarities

description: Data for construction of Tables 1-4 and Figures 1-2 in the paper
DOI: 10.6084/m9.figshare.1570940.v7
title: Psychology data on the effects of study schedules on category-member classification: Dataset

description: Subjects (<i>N</i> = 100) studied a series of 6 natural exemplars (birds) from each of 12 different categories (families). Birds were presented in one of 4 ways: (1) blocked by category; (2) intermixed; (3) first blocked, then intermixed; or (4) first intermixed, then blocked. Following study, subjects judged the likelihood that they would be able to classify new birds belonging to families that had been studied earlier. Last, subjects were asked to classify 6 new birds from each of 12 studied families. The data were collected in the laboratory and are stored using <i>fig</i><i>share</i> in an Excel file alongside an annotation file. The data can inform future investigations of the way that individuals learn natural concepts and categories.
DOI: 10.6084/m9.figshare.28093562.v2
title: Efficient Ribosomal RNA Depletion from <i>Drosophila</i> Total RNA for Next-Generation Sequencing Applications

description: Contains the following materials:Table S1: List of custom probes used for RNase H mediated rRNA-depletionTable S2: NGS data mapping detailsTable S3: Differential Expression analysis resultsTable S4: List of software used in the study
DOI: 10.17632/bk9395n48c
title: Supplementary Table

description: Clinical characteristics, histopathologic features, autoimmune/inflammatory comorbidities, malignancy comorbidities, and treatments prescribed for reactive granulomatous dermatitis
DOI: 10.17632/t77vw2s3tn
title: Research data for the manuscript (2024JD042568) submitted to JGR: Atmospheres in 2024

description: This dataset is used in the manuscript submitted to JGR: Atmospheres in 2024 by Men Xia. Field observation data of reactive chlorine species alongside related measurements is recorded here.
DOI: 10.17632/vygnwb6b2p
title: AI Skin Cancer Systematic Review

description: AI Skin Cancer Databases
DOI: 10.6084/m9.figshare.21961352.v1
title: Data for: BIRD STRIKE: REMOTE SENSING OF BIRD COLLISIONS USING ACCELEROMETER BASED EVENT TRIGGERING

description: The data provided here summarised the forces experience by 11 species of wild bird and was used to inform tests of a new kind of GPS-LoRa tag witht he ability to detect collision events.
DOI: 10.6084/m9.figshare.3560487.v1
title: Appendix K. Discussion of the normalization of the ASED, and exploration of a related metric, the total species energy distribution.

description: Discussion of the normalization of the ASED, and exploration of a related metric, the total species energy distribution.
DOI: 10.6084/m9.figshare.18316397.v2
title: Damage-tolerant design motif - code

description: These are the codes used for the damage-tolerant design motif paper.
DOI: 10.6084/m9.figshare.21821664.v1
title: Supplementary Material for: Humoral Response to BNT162b2 and CoronaVac in Patients Undergoing Maintenance Hemodialysis: A Multicenter Prospective Cohort Study

description: <b><i>Introduction:</i></b> Data regarding inactivated vaccines for SARS-CoV-2 in patients undergoing maintenance hemodialysis (MHD) are limited. We aimed to investigate humoral responses induced by CoronaVac compared to BNT162b2 in this population. <b><i>Methods:</i></b> In this multicenter prospective cohort study, adult patients undergoing MHD who lacked a history of COVID-19 and decided to get vaccinated with BNT162b2 or CoronaVac were enrolled. Participants provided serum samples before, 1 and 3 months after 2 doses. Anti-SARS-CoV-2 IgG antibodies against receptor-binding domain of the virus were measured, and levels ≥50 AU/mL were considered as positive. Breakthrough infections and adverse events were recorded. <b><i>Results:</i></b> Ninety-two patients were included, 68 (73.9%) of whom were seronegative at baseline. BNT162b2 and CoronaVac were administered in 38 (55.9%) and 30 (44.1%) patients. At 1 month, seropositivity was 93.1% in BNT162b2 and 88% in CoronaVac groups (<i>p</i> = 0.519). Quantitative antibody levels were significantly higher in BNT162b2 (<i>p</i> &lt; 0.001). At 3 months, both seropositivity (96.4% and 78.3%, <i>p</i> = 0.045) and antibody levels (<i>p</i> = 0.001) remained higher in BNT162b2 compared to CoronaVac. Five patients (7.4%) experienced breakthrough COVID-19. Adverse events were more frequent with BNT162b2, although all of them were mild. Multiple linear regression model showed that only vaccine choice (BNT162b2) was related to the humoral response (β = 0.272, <i>p</i> = 0.038). Seropositive patients at baseline (<i>n</i> = 24) had higher antibody levels at any time point. <b><i>Conclusions:</i></b> BNT162b2 and CoronaVac induced humoral responses in naïve patients undergoing MHD, which were more robust and durable for 3 months after BNT162b2. Both vaccines created high antibody levels in patients who were seropositive at baseline.
DOI: 10.6084/m9.figshare.23597043.v3
title: Supplementary data file (appendix A2)

description: Geochronology data on titanite, zircon and apatite from sample SW-1. The file also includes whole rock geochemistry data. Quality control reference results are included in the file.
DOI: 10.6084/m9.figshare.25514911.v1
title: 产后负性情绪分组635例随机森林筛选变量重要性(1).csv

description: 产后负性情绪分组635例随机森林筛选变量重要性
DOI: 10.6084/m9.figshare.25744422.v1
title: Untitled Item

description: option
DOI: 10.17632/nkzwnj24zy
title: Exploring links between social identity, emotion regulation and loneliness in those with and without a history of mental illness

description: The aim of this study was to explore the relationships between key constructs drawn from both the emotion regulation and social identity perspectives, with a view to understand loneliness in adults with and without a history of mental illness. Participants (N = 875) with a mental illness history (MH Hx, n = 217; Mage = 45 years, 59% female) and without a mental illness history (No MH Hx, n = 658; Mage = 47 years, 48% female) completed a survey comprising measures of group membership and connectedness, emotion regulation strategies, and loneliness. The MH Hx group reported higher internal affect worsening strategy use and loneliness than those no MH Hx. Hierarchical regressions indicated that the unique contributions of emotion regulation strategies and social identity factors to loneliness were equivalent between the groups. Together, social identity and emotion regulation explained 37% of the variance in loneliness in the No MH Hx subsample, and 35% in the MH Hx subsample. These findings suggest that both emotion regulation and social identity had significant unique contributions to the reported loneliness of people when controlling for demographics and each other in those with and without a history of mental illness.
DOI: 10.17632/6j3yh2wg83
title: Data for: Validity and reliability of peak tibial accelerations as real-time measure of impact loading during over-ground rearfoot running at different speeds

description: Time Series. Individual but averaged time series of tibial accelerations across the stance phase of running gait. Metrics. Individual metrics of each participant in each running condition. Pre: first running session, post: second running session, APTA: axial peak tibial acceleration, RPTA: resultant peak tibial acceleration, VLR: vertical loading rate of the ground reaction force. Subject names have been abbreviated to preserve confidentiality.
DOI: 10.6084/m9.figshare.24668916.v1
title: Blood_RNA and Blood_RNAADT anndata objects

description: Blood CITE-seq from ICI-colitis patients, UC patients, and Healthy controls
DOI: 10.6084/m9.figshare.25817599.v1
title: Simulation Code and Data for "Long-term memory induced correction to Arrhenius law"

description: Please find here the data and source code that were used for the paper "long-term memory induced correction to Arrhenius law". Detailed description of the data and code can be found in the "ReadMe.txt" file.
DOI: 10.6084/m9.figshare.28595507.v2
title: <i>Elaphe schrenckii</i> genome

description: For the first time, we have assembled the genome of the Elaphe schrenckii (also known as the black and white rat snake), achieving a chromosome-level genome assembly. This provides a foundational resource for subsequent research.
DOI: 10.6084/m9.figshare.22293289.v1
title: MN47v2 annotation

description: Annotation for MN47v2 <em>Arabidopsis lyrata</em> genome assembly
DOI: 10.6084/m9.figshare.29003399.v1
title: Deficiencies in Faculty Educator Development: A Survey Perspective from the Emergency Department

description: A cross-sectional electronic survey identifying areas of deficiency in Singapore Emergency Medicine Faculty Development, that evaluates the applicability of the 12 educator roles outlined by AMEE, in order to gauge their significance within the respective education portfolio and identify specific needs for customizable faculty development programs in Singapore.
DOI: 10.6084/m9.figshare.10258385.v1
title: Fitness Cost and Competitive Ability to Different Ploidy Levels in Ryegrass Genotypes

description: ABSTRACT: The intergenotypic competition of tetraploid ryegrass with natural diploid population may be a tool to reduce the frequency of resistant individuals in an area. This study aimed to identify and compare the phenological development, fitness cost, and competitive ability between diploid and tetraploid ryegrass genotypes. Genotypes were grown in pots, and the morphological variables of genotype growth were assessed every 15 days up to 120 days after emergence to evaluate the fitness cost. Phenological development and seed yield components were measured in a single time together with the fitness cost. Competitive ability was determined in a replacement-series experiment with proportions of tetraploid and diploid ryegrass, in which the number of tillers, plant height, leaf area, and shoot dry weight were assessed at 50 days after emergence. The results of fitness cost showed that the number of tillers, leaf area, root dry weight, and the number of seeds were higher for tetraploid ryegrass, which presented a higher competitive ability than the diploid genotype regardless of the tested proportions. Tetraploid ryegrass may be useful for reducing the frequency of herbicide-resistant diploid ryegrass because of its higher competitive potential.
DOI: 10.6084/m9.figshare.17869256.v1
title: Seurat object for the spatial transcriptomic data of sample HCM1221A

description: Seurat object for the spatial transcriptomic data of sample HCM1221A
DOI: 10.6084/m9.figshare.2066022.v2
title: ALMA AK Sco 12CO J=2-1 Visibilities

description: The visibilities used for analysis in Czekala et al. 15, http://adsabs.harvard.edu/abs/2015ApJ...806..154C<br>These are for use in the getting started example in DiskJockey: https://github.com/iancze/DiskJockey
DOI: 10.6084/m9.figshare.21378744.v5
title: 3um polystyrene bead & red blood cell & histological slide datasets

description: We shared a part of 3um polystyrene bead, red blood cell, and histological datasets used in the study "<strong>Deep learning based on parameterized physical forward model for adaptive holographic imaging with unpaired data</strong>". <br> 3um polystyrene bead - 300 ground truths - 100 diffraction intensities for each distance (7, 9, 11, 13, 15, and 17mm) <br> red blood cell - 600 ground truths - 600 diffraction intensities for unknwon distance <br> histological slide - 20 ground truths for each tissue type(1-20: duodenum, 21-40: stomach, body, 41-60: stomach, antrum) - 20 diffraction intensities for each tissue type(1-20: small bowel, 21-40: appendix, 41-60: rectum, 61-80: colon) <br> The whole datasets are available from the corresponding author upon reasonable request.
DOI: 10.6084/m9.figshare.21387900.v1
title: Supplementary Material for: Clinical Significance of Plasma D-Dimer and Fibrinogen in Outcomes after Stroke: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> There is increasing evidence on the prognostic significance of D-dimer and fibrinolysis in stroke. However, the systematic analysis of their relationship with adverse outcomes after stroke is lacking. Herein, we comprehensively assessed the correlation of D-dimer and fibrinolysis with stroke outcomes through meta-analysis. <b><i>Methods:</i></b> Studies for systematic literature review were retrieved from PubMed, EMBASE, and Cochrane Library databases. The association of D-dimer and fibrinolysis with outcomes of stroke patients was expressed as an odds ratio (OR) with 95% confidence intervals (95% CI). <b><i>Results:</i></b> Totally, 52 studies comprising 21,473 stroke patients were included. The results showed that the high D-dimer level was significantly associated with peripheral venous thrombosis after stroke (OR 1.03, 95% CI 1.01–1.05), poor outcome (MRS &gt;2) after stroke (OR 1.731, 95% CI 1.464–2.048), death after stroke (OR 2.367, 95% CI 1.737–3.224), stroke recurrence (OR 1.229, 95% CI 1.113–1.358), and early neurologic deterioration (NIHSS &gt;4) (OR 1.791, 95% CI 1.117–2.870). Moreover, high fibrinogen level was significantly associated with poor outcome (MRS &gt;2) after stroke (OR 1.650, 95% CI 1.314–2.071), death after stroke (OR 1.310, 95% CI 1.128–1.520), stroke recurrence (OR 1.228, 95% CI 1.166–1.422), early neurologic deterioration (NIHSS &gt;4) (OR 2.381, 95% CI 1.156–4.904), and coronary events after stroke (OR 1.427, 95% CI 1.232–1.653). <b><i>Conclusion:</i></b> Fibrinogen and D-dimer may be associated with adverse outcomes in patients with stroke, suggesting that they may serve as possible biomarkers for post-stroke adverse outcomes.
DOI: 10.6084/m9.figshare.25213604.v1
title: qPCR_results

description: For all samples collected for each time point, qPCR was performed using an Applied Biosystems QuantStudio 3 system (Thermo Fisher Scientific, Darmstadt, Germany). Amplification and detection were performed in 96-well optical plates (Applied Biosystems) with SYBR-Green (Applied Biosystems). All amplifications were performed in duplicates in a final volume of 5 µL containing 13.8 µL of a 2xSYBR Green PCR Master Mix including ROX as a passive reference (Applied Biosystems), 500 nM of each primer <i>L. Crispatus</i><i> </i>(Lcrisp_CbsA2F: GTACCAAGCCAAAGCAAGAC - Crisp_CbsA2R: GTTTGAAGCCTTTACGTAAGTC), <i>L jensenii</i><i> </i>(L_jensenii-Fw: AGTTCTTCGGAATGGACATAG - L_jensenii-Rev: GCCGCCTTTTAAACTTCT), <i>L. gasseri</i> (L_gasseri-Fw: TCAAGAGCTGTTAAGGCTGT - L_gasseri-Rev: CTATCGCTTCAAGTGCTTT), <i>L. iners</i> (L_iners-Fw: GTCTGCCTTGAAGATCGG - L_iners-Rev: ACAGTTGATAGGCATCATC), and <i>L. rhamnosus</i> (L_rhamnosus-Fw: TGCTTGCATCTTGATTTAATTTTG - L_rhamnosus-Rev: GTCCATTGTGGAAGATTCCC) and 1.2 µL of template DNA (0.5 mg/mL). For amplification, the standard protocol of the Applied Biosystems QuantStudio 3 system was followed, i.e., an initial cycle at 95°C for 10min, followed by 40 cycles at 95°C for 15 s, and 1 min at 60°C. To check for PCR product specificity, melting curve (Tm) analysis was performed, increasing the temperature from 60°C to 95°C at a rate of 0.2°C per second with continuous fluorescence monitoring. Standard curves for quantification consisted of 10-fold serial dilutions in the range of 10<sup>8</sup>–10<sup>0</sup> copies of the 16S rRNA gene of the <i>E. coli</i> (Invitrogen, C404010) amplified with primers 27F (50-GTTTGATCCTGGCTCAG-30) and 1492R (50-CGGCTACCTTGTTACGAC-30). The total amount of bacterial 16S in rectal swabs was quantified with universal primers, Univ 337F 50-ACTCCTACGGGAGGCAGCAGT-30 and Univ 518R 50-GTATTACCGCGGCTGCTGGCAC-30.
DOI: 10.6084/m9.figshare.23850630.v4
title: Protocol

description: Protocol
DOI: 10.17632/ssvc93f697
title: Intervention Research on Deliberate Errors in Teaching Practice

description: The effective application of learning strategies plays a crucial role in enhancing learners' learning efficiency. This study focuses on the high-efficiency learning strategy of deliberate errors, which is empirically supported but insufficiently recognized by learners in terms of cognition. Aiming at the common problem of metacognitive bias among learners, this study designs a two-stage intervention experiment.
DOI: 10.6084/m9.figshare.27902157.v1
title: Research Trends of EEG-Based BCI in 2012-2023 from a Macroscopic View: A Bibliometric Analysis

description: This contains the full list of surveyed article and the results.
DOI: 10.6084/m9.figshare.7545212.v2
title: saltmarsh data.xlsx

description: This dataset is a synthesis of saltmarsh sediment accretion/surface elevation change from 142 studies, along with satellite data on precipitation, sea ice and total suspended matter.
DOI: 10.17632/xm23f9mkdx
title: Data for Comparative analysis of mites genome reveals positive selection of diet adaptation

description: Genome annotation for mites and serpin family tree
DOI: 10.6084/m9.figshare.13521674.v1
title: CellChat object of humanSkin_NL

description: CellChat object after running CellChat to a scRNA-seq data on cells from nonlesional (NL, normal) human skin from patients.