cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zdlpz3
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perdix hodgsoniae (Hodgson, 1856)",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -82,-180 82,180 82,180 -82,-180 -82))"
 ]
}

 The dataset includes 31 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004676-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wv8yev
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is South Africa",
 "TaxonKey is Populus alba L."
 ]
}

 The dataset includes 26 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164549-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ibiofs
title: Occurrence Download

description: A dataset containing 2117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycium chinense Mill.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2117 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004676-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15472/ntwgfy
title: Fauna silvestre rescatada por Cormacarena y evaluada por la Universidad de los Llanos

description: Dentro del “Convenio Marco de Cooperación No 2.8.2015.007 Unillanos – Cormacarena” en apoyo a las Acciones de Cormacarena se realizan rescates de individuos de fauna silvestres. Posteriormente son evaluados por la Línea de Profundización, Medicina de Especies Silvestres, del Programa de Medicina Veterinaria Zootecnia de la Universidad de los Llanos. Este recurso contiene 17 registros de vertebrados que han sido evaluados, correspondientes a 7 mamíferos, 5 aves y 5 reptiles. Los animales provienen de la región, pero son rescates de Cormacarena, por lo tanto, la ubicación no es precisa.
DOI: 10.15468/dl.33mpq5
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Delosperma congestum L.Bolus"
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164538-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11103554
title: Benchmark datasets for testing AIRR-seq data processing with pyIgMap pipeline

description: This is a set of raw FASTQ files produced by various AIRR-seq protocols, stored here for benchmark conveinience and for reference purposes.

Currently it contains the following datasets:




id
fastq
reference
method
description


allergy


ERR7425614_1.fastq.gz,

ERR7425614_2.fastq.gz

https://doi.org/10.7554/eLife.79254
5'RACE, UMI, long MiSeq reads, IGH w/ isotype
Longitudinal full-length IGH repertoire profiling and clonal lineage dynamics in memory B cells, plasmablasts and plasma cells of human peripheral blood


covid


fmba_TRAB_R1.fastq.gz,

fmba_TRAB_R2.fastq.gz



https://doi.org/10.1101/2023.11.08.566227

DNA multiplex, UMI, TRA+TRB mix, NextSeq
TCR sequencing in COVID-19 convalescent and healthy donors


natprot


PMID27490633_R1.fastq.gz,

PMID27490633_R2.fastq.gz



https://doi.org/10.1038/nprot.2016.093

5'RACE, UMI, long MiSeq reads, high-quality overlap, IGH no isotype
High-quality full-length immunoglobulin profiling with unique molecular barcoding


brnaseq


SRR3743469_R1.fastq.gz,

SRR3743469_R2.fastq.gz



https://doi.org/10.1016/j.immuni.2016.08.012

RNA-Seq, all chains, B-cells
Primary human mature naïve B-cells (IgD+CD38lo; NB) and GCB-cells (CD77+CD38hi; GCB) were purified from tonsils of healthy individuals. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample kits according to the manufacturer.


uhrr


UHRR_full_R1.fastq.gz,

UHRR_full_R2.fastq.gz



https://doi.org/10.1038/s41598-021-04583-z

RNA-Seq, bulk
Universal Human Reference RNA


10x


10x_bcr_R1.fastq.gz,

10x_bcr_R2.fastq.gz,

10x_tcr_R1.fastq.gz,

10x_tcr_R2.fastq.gz



https://www.10xgenomics.com/datasets/human-pbmc-from-a-healthy-donor-10-k-cells-v-2-2-standard-5-0-0

10x Genomics vdj
See reference. AIRR-seq is split into TCR and BCR parts
DOI: 10.5281/zenodo.11103555
title: Benchmark datasets for testing AIRR-seq data processing with pyIgMap pipeline

description: This is a set of raw FASTQ files produced by various AIRR-seq protocols, stored here for benchmark conveinience and for reference purposes.

Currently it contains the following datasets:




id
fastq
reference
method
description


allergy


ERR7425614_1.fastq.gz,

ERR7425614_2.fastq.gz

https://doi.org/10.7554/eLife.79254
5'RACE, UMI, long MiSeq reads, IGH w/ isotype
Longitudinal full-length IGH repertoire profiling and clonal lineage dynamics in memory B cells, plasmablasts and plasma cells of human peripheral blood


covid


fmba_TRAB_R1.fastq.gz,

fmba_TRAB_R2.fastq.gz



https://doi.org/10.1101/2023.11.08.566227

DNA multiplex, UMI, TRA+TRB mix, NextSeq
TCR sequencing in COVID-19 convalescent and healthy donors


natprot


PMID27490633_R1.fastq.gz,

PMID27490633_R2.fastq.gz



https://doi.org/10.1038/nprot.2016.093

5'RACE, UMI, long MiSeq reads, high-quality overlap, IGH no isotype
High-quality full-length immunoglobulin profiling with unique molecular barcoding


brnaseq


SRR3743469_R1.fastq.gz,

SRR3743469_R2.fastq.gz



https://doi.org/10.1016/j.immuni.2016.08.012

RNA-Seq, all chains, B-cells
Primary human mature naïve B-cells (IgD+CD38lo; NB) and GCB-cells (CD77+CD38hi; GCB) were purified from tonsils of healthy individuals. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample kits according to the manufacturer.


uhrr


UHRR_full_R1.fastq.gz,

UHRR_full_R2.fastq.gz



https://doi.org/10.1038/s41598-021-04583-z

RNA-Seq, bulk
Universal Human Reference RNA


10x


10x_bcr_R1.fastq.gz,

10x_bcr_R2.fastq.gz,

10x_tcr_R1.fastq.gz,

10x_tcr_R2.fastq.gz



https://www.10xgenomics.com/datasets/human-pbmc-from-a-healthy-donor-10-k-cells-v-2-2-standard-5-0-0

10x Genomics vdj
See reference. AIRR-seq is split into TCR and BCR parts
DOI: 10.15468/dl.fjmqoz
title: Occurrence Download

description: A dataset containing 374226 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trifolium pratense"
 ]
}

 The dataset includes 374226 records from 850 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004676-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spgmac
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megachasma pelagios Taylor, Compagno & Struhsaker, 1983"
 ]
}

 The dataset's 2 records were derived from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164540-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3omfo
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cardamine waldsteinii Dyer",
 "HasCoordinate is true",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 28 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004676-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/to1oyd
title: Système d'Information sur la Nature et les Paysages d'Ile de France - Données du naturaliste Frédéric Berthelier

description: Jeux de données provenant de la base de données CETTIA du Système d'Information sur la Nature et les Paysages d'Ile de France. Il concerne la faune à l'exception des insectes.
DOI: 10.15468/dl.fxtn6n
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megachasma pelagios Taylor, Compagno & Struhsaker, 1983"
 ]
}

 The dataset includes 48 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164539-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwvlnu
title: Occurrence Download

description: A dataset containing 6484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Piciformes",
 "Geometry POLYGON((-98.349609 16.573022,-98.173828 17.056784,-98.569335 17.895114,-97.756347 18.208480,-97.646484 18.020527,-97.141113 18.229351,-96.723632 18.417078,-96.635742 18.646245,-96.174316 18.229351,-95.822753 18.124970,-95.888671 17.706828,-95.734863 17.518344,-95.295410 17.748686,-95.009765 17.350638,-94.921875 17.245744,-93.911132 17.098792,-94.086914 16.193574,-94.130859 15.982453,-94.746093 16.172472,-96.416015 15.644196,-98.569335 16.383391,-98.349609 16.573022))"
 ]
}

 The dataset includes 6484 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004676-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xg5smu
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Delosperma fredericii Lavis"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164573-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9o4bgi
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is VFD-RP: Taunus: Ponykoppel Thurner"
 ]
}

 The dataset includes 80 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004676-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d62ek9
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Delosperma deleeuwiae Lavis"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164555-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/zls9iy
title: Système d'Information sur la Nature et les Paysages d'Ile de France - Données du/de la naturaliste Vanhille françois provenant de la base de donnée du SINP Île-de-France CETTIA

description: Jeux de données provenant de la base de données CETTIA du Système d'Information sur la Nature et les Paysages d'Ile de France. Il concerne la faune à l'exception des insectes.
DOI: 10.15468/dl.lzw4pd
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caulerpa antoensis Yamada, 1940",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004676-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/6b3ipr
title: Système d'Information sur la Nature et les Paysages d'Ile de France - Données de la structure Pie verte bio provenant de la base de donnée du SINP Île-de-France CETTIA

description: Jeux de données provenant de la base de données CETTIA du Système d'Information sur la Nature et les Paysages d'Ile de France. Il concerne la faune à l'exception des insectes.
DOI: 10.15468/dl.s3pah6
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Delosperma gramineum L.Bolus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164589-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sc2bmb
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rauvolfia purpurascens Standl.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 46 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004677-150528172251762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2se7hp
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Philydor novaesi Teixeira & Gonzaga, 1983"
 ]
}

 The dataset includes 51 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029178-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sf4cph
title: Occurrence Download

description: A dataset containing 783 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetraclinis articulata (Vahl) Mast."
 ]
}

 The dataset includes 783 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004677-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uahmqk
title: Occurrence Download

description: A dataset containing 128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-6.38306 49.56798,-2.27417 49.56798,-2.27417 51.45401,-6.38306 51.45401,-6.38306 49.56798))",
 "TaxonKey is Lasius niger (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 128 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008300-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tne8f6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Planorbella Haldeman, 1843)",
 "HasCoordinate is true",
 "Country is South Africa"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058266-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vtxwv
title: Occurrence Download

description: A dataset containing 393988 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "DatasetKey is Continuous Plankton Recorder Dataset (SAHFOS)"
 ]
}

 The dataset includes 393988 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062027-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emh2q3
title: Occurrence Download

description: A dataset containing 848 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Carcharodon carcharias (Linnaeus, 1758)"
 ]
}

 The dataset includes 848 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067732-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4p6zd
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Year 2014-2014",
 "TaxonKey is Vireo olivaceus (Linnaeus, 1766)"
 ]
}

 The dataset includes 24 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008305-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnpvtx
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oligoryzomys fornesi (Massoia, 1973)"
 ]
}

 The dataset includes 160 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008370-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9tbyae
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neophasia terlooii Behr, 1869"
 ]
}

 The dataset includes 304 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075299-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hokmhh
title: Occurrence Download

description: A dataset containing 378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Year 2014-2014",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Falco sparverius Linnaeus, 1758"
 ]
}

 The dataset includes 378 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008320-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfybgu
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Khaya grandifolia Thompson"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008370-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.navrro
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Indonesia",
 "Country is Malaysia",
 "Country is Viet Nam",
 "Country is Lao People’s Democratic Republic",
 "Country is Thailand",
 "Country is Cambodia",
 "Country is Brunei Darussalam",
 "Country is Myanmar",
 "Country is Philippines"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Anisoptera costata Korth.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008938-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u3g5eo
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viridovipera gumprechti (David, Vogel, Pauwels & Vidal, 2002)"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031790-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kn6ke9
title: Occurrence Download

description: A dataset containing 346 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella cathedrifolia Spring"
 ]
}

 The dataset includes 346 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081515-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ia3yh8
title: Occurrence Download

description: A dataset containing 4504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Asteroids, ophiuroids and holothurians from the South-Eastern Weddell Sea (Southern Ocean)"
 ]
}

 The dataset includes 4504 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008938-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhcwof
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Year 2006-2006",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Falco sparverius Linnaeus, 1758"
 ]
}

 The dataset includes 73 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008317-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.