cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh2773069.08fu
title: SH2773069.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.mcjnt8
title: Occurrence Download

description: A dataset containing 61784506 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-118.43262 13.86475,-85.56152 13.86475,-85.56152 32.32178,-118.43262 32.32178,-118.43262 13.86475))"
 ]
}

 The dataset includes 61784506 records from 2017 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008137-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.14524480.v1
title: Additional file 1 of Genome-wide variant-based study of genetic effects with the largest neuroanatomic coverage

description: Additional file 1. The pearson correlation of SNPs, SNP pair or SNP sets and 3168 features.
DOI: 10.25345/c50g3h87n
title: MassIVE MSV000094127 - Arachidonic acid suppresses natural killer cell functions by interfering with multiple signal transduction pathways
title: High levels of the polyunsaturated fatty acid arachidonic acid (AA) in the ovarian carcinoma (OC) microenvironment are associated with short relapse-free survival. OC progression is also linked to impaired immunosurveillance, due in part to dysfunctional natural killer (NK) cells. In the present study, we have combined phosphoproteomics, transcriptional profiling and functional assays to study the impact of AA on NK cell functions. Our data show that AA (i) impairs interleukin-2-mediated NK cell proliferation and pro-inflammatory gene expression by blocking STAT1-dependent signaling, (ii) interferes with NK cell receptor (NCR) signaling, including inhibition of MICA-induced ERK phosphorylation and (iii) affects the production of reactive oxygen species. Intriguingly, low expression of several NK cell receptors is associated with a short survival of OC patients, suggesting that AA, dysfunction of NK cells and OC progression are functionally linked. - Orbitrap 480 - TMT labelling - FeNTA phospho-enrichment - DDA
DOI: 10.6084/m9.figshare.19777921
title: Outcomes in intervention research on snakebite envenomation: a systematic review

description: Extended datasets for study titled :   
Bhaumik S et al. Outcomes in intervention research on snakebite envenomation: a systematic review
DOI: 10.5517/ccdc.csd.cc2hhd4k
title: CCDC 2308698: Experimental Crystal Structure Determination

description: Related Article: Sergio Aguado, Pablo García-Álvarez, Javier A. Cabeza, Luis Casarrubios, Miguel A. Sierra|2024|Dalton Trans.|53|3756|doi:10.1039/D3DT04197B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hhd5l
title: CCDC 2308699: Experimental Crystal Structure Determination

description: Related Article: Sergio Aguado, Pablo García-Álvarez, Javier A. Cabeza, Luis Casarrubios, Miguel A. Sierra|2024|Dalton Trans.|53|3756|doi:10.1039/D3DT04197B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hhd6m
title: CCDC 2308700: Experimental Crystal Structure Determination

description: Related Article: Sergio Aguado, Pablo García-Álvarez, Javier A. Cabeza, Luis Casarrubios, Miguel A. Sierra|2024|Dalton Trans.|53|3756|doi:10.1039/D3DT04197B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hlm1s
title: CCDC 2311795: Experimental Crystal Structure Determination

description: Related Article: Yu-Jie Wang, Zhao-Feng Qiu, Ya Zhang, Fang-Fang Wang, Yue Zhao, Wei-Yin Sun|2024|Dalton Trans.|53|3685|doi:10.1039/D3DT04056A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hlm2t
title: CCDC 2311796: Experimental Crystal Structure Determination

description: Related Article: Yu-Jie Wang, Zhao-Feng Qiu, Ya Zhang, Fang-Fang Wang, Yue Zhao, Wei-Yin Sun|2024|Dalton Trans.|53|3685|doi:10.1039/D3DT04056A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hmxtw
title: CCDC 2313059: Experimental Crystal Structure Determination

description: Related Article: Ying-Ying Huang, Yong He, Yang Liu, Jin-Hui Fu, Xiao-lin Liu, Xin-Tao Wu, Tian-Lu Sheng|2024|Dalton Trans.|53|3777|doi:10.1039/D3DT04226J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hmxvx
title: CCDC 2313060: Experimental Crystal Structure Determination

description: Related Article: Ying-Ying Huang, Yong He, Yang Liu, Jin-Hui Fu, Xiao-lin Liu, Xin-Tao Wu, Tian-Lu Sheng|2024|Dalton Trans.|53|3777|doi:10.1039/D3DT04226J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hmxwy
title: CCDC 2313061: Experimental Crystal Structure Determination

description: Related Article: Ying-Ying Huang, Yong He, Yang Liu, Jin-Hui Fu, Xiao-lin Liu, Xin-Tao Wu, Tian-Lu Sheng|2024|Dalton Trans.|53|3777|doi:10.1039/D3DT04226J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hmxxz
title: CCDC 2313062: Experimental Crystal Structure Determination

description: Related Article: Ying-Ying Huang, Yong He, Yang Liu, Jin-Hui Fu, Xiao-lin Liu, Xin-Tao Wu, Tian-Lu Sheng|2024|Dalton Trans.|53|3777|doi:10.1039/D3DT04226J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hmxy0
title: CCDC 2313063: Experimental Crystal Structure Determination

description: Related Article: Ying-Ying Huang, Yong He, Yang Liu, Jin-Hui Fu, Xiao-lin Liu, Xin-Tao Wu, Tian-Lu Sheng|2024|Dalton Trans.|53|3777|doi:10.1039/D3DT04226J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hmxz1
title: CCDC 2313064: Experimental Crystal Structure Determination

description: Related Article: Ying-Ying Huang, Yong He, Yang Liu, Jin-Hui Fu, Xiao-lin Liu, Xin-Tao Wu, Tian-Lu Sheng|2024|Dalton Trans.|53|3777|doi:10.1039/D3DT04226J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hylcf
title: CCDC 2322345: Experimental Crystal Structure Determination

description: Related Article: Yujing Zhu, Xiaoju Shi, Duanxiu Li, Shuang Li, Lin Wang, Zongwu Deng, Shaohua Huang, Hailu Zhang|2024|CrystEngComm|26|1090|doi:10.1039/D3CE01129A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hzclg
title: CCDC 2323096: Experimental Crystal Structure Determination

description: Related Article: Yujing Zhu, Xiaoju Shi, Duanxiu Li, Shuang Li, Lin Wang, Zongwu Deng, Shaohua Huang, Hailu Zhang|2024|CrystEngComm|26|1090|doi:10.1039/D3CE01129A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hzf75
title: CCDC 2323147: Experimental Crystal Structure Determination

description: Related Article: Cai-Hong Peng, Guanghua Li, Ke-Chang Li, Xiao-Bing Cui|2024|Dalton Trans.|53|3499|doi:10.1039/D3DT04052F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h1xp5
title: CCDC 2295757: Experimental Crystal Structure Determination

description: Related Article: Luca Rigamonti, Lorenzo Marchi, Valentina Fiorini, Stefano Stagni, Stefano Zacchini, Dawid Pinkowicz, Katarzyna Dziedzic-Kocurek, Alessandra Forni, Francesco Muniz Miranda, Rita Mazzoni|2024|Dalton Trans.|53|3490|doi:10.1039/D3DT04026G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h1xq6
title: CCDC 2295758: Experimental Crystal Structure Determination

description: Related Article: Luca Rigamonti, Lorenzo Marchi, Valentina Fiorini, Stefano Stagni, Stefano Zacchini, Dawid Pinkowicz, Katarzyna Dziedzic-Kocurek, Alessandra Forni, Francesco Muniz Miranda, Rita Mazzoni|2024|Dalton Trans.|53|3490|doi:10.1039/D3DT04026G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20294476
title: Additional file 1 of α-Gal antigen-deficient rabbits with GGTA1 gene disruption via CRISPR/Cas9

description: Additional file 1.
DOI: 10.34740/kaggle/ds/2369171
title: Line Scanning Confocal Microscopy (Tissue Paper)
DOI: 10.34808/tmvr-wx24
title: Miscanthus × giganteus root anatomical traits measurements

description: This data set presents the optical microscope measurements/ images of Miscanthus × giganteus (M×g) roots. The experiment was performed under work package 1: "Properties characterisation of two types of biochar", task D_RT: Phyto-analyses (stress response of plants on biochar amendments) in cooperation with Aarhus University. A short term pot experiment (8 weeks) was conducted with M×g planted in soil with wood and straw biochar amendments (1, 2.5, 5, 10, and 15%, v/v). Following the exposition plant biomass was collected, and randomly selected M×g roots were chosen for microscope examination. Delta Optical Generic Pro microscope with camera 3MP (Delta Optical, Poland) integrated with DLTCamViewer software was used for observation.
Project title: Energy BIOmass CULtivation on marginal soils enhanced with biochar amendments fertilized with by-product in order to reduce nutrients leaching (eBIOCOOL) (3/2022/IDUB/II.2/Sc)
Ver 1 includes images of M×g roots growing in control soil and soil amended with wood biochar.
DOI: 10.17028/rd.lboro.25250734
title: Supplemental information files for Generalized phase-space techniques to explore quantum phase transitions in critical quantum spin systems

description: © the authors, CC-BY 4.0Supplementary files for article Generalized phase-space techniques to explore quantum phase transitions in critical quantum spin systemsWe apply the generalized Wigner function formalism to detect and characterize a range of quantum phase transitions in several cyclic, finite-length, spin-[Formula presented] one-dimensional spin-chain models, viz., the Ising and anisotropic XY models in a transverse field, and the XXZ anisotropic Heisenberg model. We make use of the finite system size to provide an exhaustive exploration of each system's single-site, bipartite and multi-partite correlation functions. In turn, we are able to demonstrate the utility of phase-space techniques in detecting and characterizing first-order, second-order and infinite-order quantum phase transitions, while also enabling an in-depth analysis of the correlations present within critical systems. We also highlight the method's ability to capture other features of spin systems such as ground-state factorization and critical system scaling. Finally, we demonstrate the generalized Wigner function's utility for state verification by determining the state of each system and their constituent sub-systems at points of interest across the quantum phase transitions, enabling interesting features of critical systems to be readily analyzed.
DOI: 10.17028/rd.lboro.25250734.v1
title: Supplemental information files for Generalized phase-space techniques to explore quantum phase transitions in critical quantum spin systems

description: © the authors, CC-BY 4.0Supplementary files for article Generalized phase-space techniques to explore quantum phase transitions in critical quantum spin systemsWe apply the generalized Wigner function formalism to detect and characterize a range of quantum phase transitions in several cyclic, finite-length, spin-[Formula presented] one-dimensional spin-chain models, viz., the Ising and anisotropic XY models in a transverse field, and the XXZ anisotropic Heisenberg model. We make use of the finite system size to provide an exhaustive exploration of each system's single-site, bipartite and multi-partite correlation functions. In turn, we are able to demonstrate the utility of phase-space techniques in detecting and characterizing first-order, second-order and infinite-order quantum phase transitions, while also enabling an in-depth analysis of the correlations present within critical systems. We also highlight the method's ability to capture other features of spin systems such as ground-state factorization and critical system scaling. Finally, we demonstrate the generalized Wigner function's utility for state verification by determining the state of each system and their constituent sub-systems at points of interest across the quantum phase transitions, enabling interesting features of critical systems to be readily analyzed.
DOI: 10.6084/m9.figshare.21343150
title: Additional file 1 of Pan-cancer analysis of oncogenic TNFAIP2 identifying its prognostic value and immunological function in acute myeloid leukemia

description: Additional file 1: Supplementary Table S1. Statistical results of Student’s T-test for TNFAIP2 expression level among different subtypes of AML patients from TCGA cohort in the distribution of FAB classifications. The results were analyzed by UALCAN. Supplementary Table S2. Statistical results of Student’s T-test for TNFAIP2 expression level among different subtypes of AML patients in the microarray data of GSE14468 from the GEO database in the distribution of FAB classifications. Supplementary Table S3. The co-expressed genes associated with TNFAIP2 expression in AML. Supplementary Table S4. The differentially expressed genes between the TNFAIP2high and TNFAIP2low group of AML patients. Supplementary Table S5. The overlapping genes between significantly co-expressed genes and significantly differentially expressed genes of TNFAIP2 in AML.
DOI: 10.6084/m9.figshare.6663308.v1
title: MOESM3 of Similarities and differences in gut microbiome composition correlate with dietary patterns of Indian and Chinese adults

description: Additional file 4: Table S3. Metastats analysis showed gut bacterial clades with significant variation between Indian and Chinese adults.
DOI: 10.6084/m9.figshare.6663323.v1
title: MOESM4 of Similarities and differences in gut microbiome composition correlate with dietary patterns of Indian and Chinese adults

description: Additional file 5: Table S4. Alpha diversity indices.
DOI: 10.6084/m9.figshare.19246270
title: Endophytic fungus <i>Bipolaris</i> sp. CSL-1 induces salt tolerance in <i>Glycine max.</i>L via modulating its endogenous hormones, antioxidative system and gene expression

description: Salinity stress is one of the most serious environmental stress that inhibits plant growth. In this study, we adopted an environment friendly technique and screened different plant growth-promoting fungi for different plant growth promoting (PGP) traits and salinity stress. Among those isolates, <i>Bipolaris</i> sp. CSL-1 was selected based on plant growth-promoting characteristics, such as producing indole-3-acetic acid (IAA), gibberellins (GAs), organic acids and resistance to sodium chloride (NaCl) stress. Here, we found that inoculating soybean with isolate CSL-1 significantly increased shoot and root length, shoot and root fresh and dry weight and chlorophyll content under NaCl stress (200 mM). Endogenous abscisic acid (ABA) levels were significantly decreased, whereas salicylic acid (SA) levels were increased in CSL-1-inoculated plants under NaCl stress. NaCl-treated noninoculated plants showed higher levels of antioxidants and oxidative stress such as peroxidase, polyphenol oxidase (PPO), malondialdehyde (MDA) and superoxide anion (SOA). Furthermore, CSL-1 inoculation improved soybean resistance to NaCl stress, and there was a significant decrease in <i>GmFDL19</i>, <i>GmNARK</i>, and <i>GmSIN1</i> expression levels. As a result, the fungal isolate CSL-1 mitigates the effect of salt stress and enhance soybean growth and might be used as a valuable ecofriendly microorganism resource in salt-affected areas.
DOI: 10.6084/m9.figshare.6663293
title: MOESM2 of Similarities and differences in gut microbiome composition correlate with dietary patterns of Indian and Chinese adults

description: Additional file 3: Table S2. The summarized information of amplicon sequencing of 16 fecal DNA samples.
DOI: 10.6084/m9.figshare.12430481
title: Determining the steering direction in critical situations: A decision tree–based method

description: <b>Objective:</b> Factors related to the driver–vehicle–environment system have a significant influence on a driver’s decision to perform evasive maneuvers, especially the decision of steering direction (DSD) in critical situations. However, few studies have systematically investigated the relationships between these factors and DSD. The objective of this study is to analyze and model drivers’ DSD in critical situations. <b>Methods:</b> Data from the NASS-CDS from 1995 to 2015 were utilized in this study. The decision tree (DT) classifier was utilized to model a driver’s DSD for both intersection-related and non-intersection-related subsets, combined with a 10-fold cross-validation technique and grid search approach to evaluate and optimize the model. An analysis of variable importance was also conducted. <b>Results:</b> Two separate DT models of drivers’ DSD were obtained based on the optimized hyperparameters, with test accuracies of 84.6% (intersection-related) and 79.2% (non-intersection-related). The variable DIFFANGLE (angle difference between 2 vehicles) ranked as the most important factor influencing drivers’ DSD in both models. The variables, in order of importance, were SPEED (travel speed of the subject vehicle) and AGE (driver’s age) for the intersection-related model and SPEED, PREMOVE (pre-event movement), TRAFFLOW (trafficway flow), and AGE for the non-intersection-related model. Moreover, an interesting same direction pattern was observed in both DT models. <b>Conclusions:</b> This study employed NASS-CDS data and DT classifiers to analyze and model drivers’ DSD behavior. The test accuracies for both classifiers were acceptable. Potential variables influencing drivers’ DSD were explored, which improves the research on evasive behavior in lateral movement and promotes further applications for intelligent vehicles using the constructed models.
DOI: 10.6084/m9.figshare.14524470
title: Additional file 2 of Colonization with multidrug-resistant Enterobacteriaceae among infants: an observational study in southern Sri Lanka

description: Additional file 2: Table S8. Antimicrobial resistance prediction of E. coli genomes included in this study, as determined by AMRfinder.