cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14722217
title: Influence of menstrual cycle and oral contraception on taxonomic composition and gas production in the gut microbiome.

description: Introduction: Oral contraceptives (OCs) are widely used for birth control and offer benefits such as menstrual cycle regulation and reduced menstrual pain. However, they have also been associated with an increased risk of cancer and reduced bone mass density.

Gap Statement: While the gut microbiome is known to interact with endocrine factors, the impact of hormonal OCs on its composition and function remains underexplored. Additionally, we explore the relationship of OC use and the microbiome to gas production which can cause symptoms and be indicative of poor health.

Aim: This study investigates the effects of OCs on the diversity and composition of the gut microbiome and its association with breath hydrogen (H2) and methane (CH4) levels.

Methodology: We utilized 16S rRNA gene sequencing to analyze fecal samples from 65 women, comparing OC users with non-users at two menstrual cycle timepoints. Breath tests measured hydrogen and CH4 production. Data were analyzed for microbial diversity, community composition, and correlation with gas production.

Results: There were no differences in overall microbial diversity between OC users and non-users in samples collected on day 2 of the menstrual cycle. However, at day 21 we found a significant difference in microbial richness, suggesting a cycle-dependent effect of OCs on gut microbiota species richness but not composition. We found a strong correlation between H2 and CH4 concentrations, and an interaction between OC use and menstrual cycle on H2 and CH4 production. We also identified several taxa associated with both high levels of H2 and CH4 production, and oral contraceptive use.

Conclusion: Our study highlights the intricate relationships between hormonal contraceptives, the gut microbiota, and gas production, and connects shifts in the microbiome composition to gastrointestinal symptoms (e.g., gas production) that can impact overall health. This underscores the need for further research on the long-term effects of OCs and for the development of precise therapeutic strategies to address potential adverse effects. Our findings offer new perspectives on the microbiome-hormone-gas production nexus, potentially broadening our understanding of the systemic implications of OCs.
DOI: 10.15468/dl.sdy8km
title: Occurrence Download

description: A dataset containing 2348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gaylussacia brasiliensis (Spreng.) Meisn., Gaylussacia montana (Pohl) Sleumer, Gaylussacia oleifolia Dunal, Gaylussacia rhododendron Cham. & Schltdl., Gaylussacia salicifolia Cham. & Schltdl.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2348 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004325-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89reut
title: Occurrence Download

description: A dataset containing 8334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gaultheria acuminata Cham. & Schlecht, Gaultheria bracteata (Cav.) G.Don, Gaultheria erecta Vent., Gaultheria eriophylla (Pers.) Mart. ex Sleumer, Gaultheria fragrantissima Wall., Gaultheria griffithiana Wight, Gaultheria itatiaiae (Wawra ex Drude) Sleumer, Gaultheria malayana Airy Shaw)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8334 records from 268 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004327-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jntwpq
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leucothoe griffithiana C.B.Clarke)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 95 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004328-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28131449
title: ocelli - tutorial 1

description: Data for Tutorial 1 of Ocelli, available at https://ocelli.readthedocs.io.
DOI: 10.15468/dl.qumayc
title: Occurrence Download

description: A dataset containing 8026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Illicium angustisepalum A.C.Sm., Illicium arborescens Hayata, Illicium brevistylum A.C.Sm., Illicium burmanicum E.H.Wilson, Illicium ekmanii A.C.Sm., Illicium floridanum J.Ellis, Illicium griffithii Hook.fil. & Thomson, Illicium henryi Diels, Illicium hottense A.Guerrero, Illicium jiadifengpi B.N.Chang, Illicium lanceolatum A.C.Sm., Illicium macranthum A.C.Sm., Illicium majus Hook.fil. & Thomson, Illicium merrillianum A.C.Sm., Illicium mexicanum A.C.Sm., Illicium micranthum Dunn, Illicium modestum A.C.Sm., Illicium parviflorum Michx., Illicium parvifolium Merr., Illicium peninsulare A.C.Sm., Illicium petelotii A.C.Sm., Illicium philippinense Merr., Illicium ridleyanum A.C.Sm., Illicium simonsii Maxim., Illicium stapfii Merr., Illicium sumatranum A.C.Sm., Illicium tashiroi Maxim., Illicium tenuifolium (Ridl.) A.C.Sm., Illicium ternstroemioides A.C.Sm., Illicium tsaii A.C.Sm., Illicium verum Hook.fil., Illicium wardii A.C.Sm.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8026 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004329-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xpugcz
title: Occurrence Download

description: A dataset containing 5234 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspidoscelis costatus (Cope, 1878)"
 ]
}

 The dataset includes 5234 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004330-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28303598
title: ocelli - tutorials 2-3

description: Data for Tutorials 2-3 of Ocelli, available at https://ocelli.readthedocs.io. Includes processed data from the Gene Expression Omnibus under accession number GSE140203 [1].[1] Ma S, Zhang B, LaFave LM, Earl AS et al. Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin. <i>Cell</i> 2020 Nov 12;183(4):1103-1116.e20.
DOI: 10.15468/dl.wuynfu
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "TaxonKey is Chlosyne hoffmanni (Behr, 1863)"
 ]
}

 The dataset includes 42 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004332-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28303928
title: ocelli - tutorials 4-5

description: Data for Tutorials 4-5 of Ocelli, available at https://ocelli.readthedocs.io. Includes processed data from the Gene Expression Omnibus under accession number GSE156478 [1].[1] Mimitou EP, Lareau CA, Chen KY, Zorzetto-Fernandes AL et al. Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells. <i>Nat Biotechnol</i> 2021 Oct;39(10):1246-1258.
DOI: 10.15468/dl.xh86zw
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Aa argyrolepis Rchb.f."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004333-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xu4h3h
title: Occurrence Download

description: A dataset containing 7076556 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Great Backyard Bird Count"
 ]
}

 The dataset includes 7076556 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004316-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3dtfxk
title: Occurrence Download

description: A dataset containing 21001 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is SWE",
 "TaxonKey is Malus domestica (Suckow) Borkh."
 ]
}

 The dataset includes 21001 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004334-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxwb6y
title: Occurrence Download

description: A dataset containing 169827 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-88.92819 42.55282,-87.52203 42.55282,-87.52203 43.22579,-88.92819 43.22579,-88.92819 42.55282))",
 "HasGeospatialIssue is false",
 "TaxonKey is Turdus migratorius Linnaeus, 1766"
 ]
}

 The dataset includes 169827 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004298-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.962pkt
title: Occurrence Download

description: A dataset containing 922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (South Africa, Botswana)",
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Lycaon pictus (Temminck, 1820)"
 ]
}

 The dataset includes 922 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004335-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dyyra5
title: Occurrence Download

description: A dataset containing 866 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence and percent cover of the colonial invasive tunicate Didemnum vexillum from near-seafloor drift transect video imagery and high-resolution digital still images in the western Bay of Fundy, Canada"
 ]
}

 The dataset includes 866 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004336-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eymnps
title: Occurrence Download

description: A dataset containing 3828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Trema micranthum (L.) Blume"
 ]
}

 The dataset includes 3828 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004337-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmbmrg
title: Occurrence Download

description: A dataset containing 8626 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspidoscelis deppii (Wiegmann, 1834)"
 ]
}

 The dataset includes 8626 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004338-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28303934
title: ocelli - tutorial 6

description: Data for Tutorial 6 of Ocelli, available at https://ocelli.readthedocs.io. Includes processed data from the Gene Expression Omnibus under accession number GSE212588 [1].[1] Stuart, Tim, et al. "Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution." <i>Nature biotechnology</i> 41.6 (2023): 806-812.
DOI: 10.6084/m9.figshare.28303934.v1
title: ocelli - tutorial 6

description: Data for Tutorial 6 of Ocelli, available at https://ocelli.readthedocs.io. Includes processed data from the Gene Expression Omnibus under accession number GSE212588 [1].[1] Stuart, Tim, et al. "Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution." <i>Nature biotechnology</i> 41.6 (2023): 806-812.
DOI: 10.15468/dl.97he3z
title: Occurrence Download

description: A dataset containing 1011423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coereba flaveola (Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1011423 records from 556 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004326-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.21mwbt
title: Occurrence Download

description: A dataset containing 353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Merremia quinquefolia (L.) Hallier fil.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 353 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004662-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pruz5u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Festuca stricta subsp. trachyphylla (Hack.) Patzke ex Joch.Müll.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020812-240229165702484/datasets/export for details.
DOI: 10.15468/dl.rgkyw4
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum holochilum (Schltr.) Mansf. ex Hágsater"
 ]
}

 The dataset includes 27 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156234-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ipz9fo
title: Occurrence Download

description: A dataset containing 595 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Telmatobius culeus (Garman, 1876)"
 ]
}

 The dataset includes 595 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004675-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9q6d4
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elleanthus malpighiiflorus Carnevali & G.A.Romero"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156235-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d667k4
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Three new species of Neotropical Ceraleurodicus Hempel (Hemiptera: Aleyrodidae) found in the Natural History Museum (London) collection, with notes and a puparial key to species"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070083-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3293mk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"BASIS_OF_RECORD","values":["Preserved specimen"],"matchCase":false},{"type":"in","key":"DATASET_KEY","values":["754e1720-be12-4ed6-a873-11a6f95aca47"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004103-250415084134356/datasets/export for details.
DOI: 10.15468/dl.rxyw9c
title: Occurrence Download

description: A dataset containing 418 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypericum linarioides Bosse"
 ]
}

 The dataset includes 418 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027223-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8osl8i
title: Occurrence Download

description: A dataset containing 20348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arundo donax L.",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((148.01 -77.56,148.01 82.15,-131.13 82.15,-131.13 -77.56,148.01 -77.56))"
 ]
}

 The dataset includes 20348 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009271-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4avgnu
title: Occurrence Download

description: A dataset containing 2813 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Daphnia pulex Leydig, 1860"
 ]
}

 The dataset includes 2813 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023120-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqb8dp
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypoxis sobolifera Jacq."
 ]
}

 The dataset includes 129 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027259-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f2yydk
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agrostophyllum malindangense Ames"
 ]
}

 The dataset includes 32 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023136-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4y9bp8
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypericum kimurae N.Robson"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027100-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dr8gas
title: Occurrence Download

description: A dataset containing 2009 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myliobatiformes",
 "Geometry POLYGON((-83.671875 -11.178401,-75.585937 -20.961439,-74.882812 -32.546813,-79.804687 -55.973798,-77.343749 -58.077876,-61.523437 -57.136239,-51.328125 -49.837982,-52.734375 -40.979898,-39.726562 -28.304380,-29.53125 -12.211180,-26.71875 2.108898,-52.03125 11.867350,-80.15625 11.867350,-84.023437 0.703107,-83.671875 -11.178401))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2009 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009271-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4f2b6
title: Occurrence Download

description: A dataset containing 380 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Sclerophrys kisoloensis (Loveridge, 1932)"
 ]
}

 The dataset includes 380 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039857-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dok295
title: Occurrence Download

description: A dataset containing 22471 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salix myrsinifolia Salisb.",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1970",
 "Year is less than or equal to 2017",
 "DecimalLongitude is greater than or equal to -15",
 "DecimalLongitude is less than or equal to 40",
 "DecimalLatitude is greater than or equal to 30",
 "DecimalLatitude is less than or equal to 75"
 ]
}

 The dataset includes 22471 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009271-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6ccur
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypericum macgregorii F.Muell."
 ]
}

 The dataset includes 102 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027263-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfskab
title: Occurrence Download

description: A dataset containing 356645 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clematis vitalba L."
 ]
}

 The dataset includes 356645 records from 1854 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011426-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.