cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xs9cg4
title: Occurrence Download

description: A dataset containing 788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.42010912637546",
 "DecimalLongitude is less than 6.42316867955985",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 788 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002721-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9tjny
title: Occurrence Download

description: A dataset containing 381 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sceloporus utiformis Cope, 1864",
 "Geometry POLYGON((-135.83 10.02,-135.83 41.08,-80.73 41.08,-80.73 10.02,-135.83 10.02))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 381 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009730-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88yayr
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aloe bussei A.Berger"
 ]
}

 The dataset includes 29 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002795-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcqqyd
title: Occurrence Download

description: A dataset containing 2802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Trimeresurus stejnegeri Schmidt, 1925"
 ]
}

 The dataset includes 2802 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040824-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5ug14
title: Occurrence Download

description: A dataset containing 1137 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoeurycea bellii (Gray, 1850)"
 ]
}

 The dataset includes 1137 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009730-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bycesk
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plocama pendula Aiton",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 48 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002751-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eepzqe
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Encephalartos arenarius R.A.Dyer"
 ]
}

 The dataset includes 149 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040811-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.flsagh
title: Occurrence Download

description: A dataset containing 206012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thalasseus maximus (Boddaert, 1783)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 206012 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009730-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14181657
title: Reference Architecture for Autonomy and Adaptivity in the Space Domain

description: File 1 - Protocol SLR - Reference Architecture for autonomous and adaptive space systems.xlsx: This data extraction worksheet presents the relevant data from the identified studies and provides the selection process in this systematic literature review. The main information reported in this worksheet summarizes the followed protocol, containing an identifier (id) for each returned study. This catalog helped us in the data extraction and synthesis procedures and may be used by potentially interested, for example, for updating or replication. 

File 2 - Interview_Guide_Questionnaire.pdf: The questionnaire was used to guide the interviews and also to ensure consistency between responses. It covers key aspects of the proposed reference architecture, such as general applicability, autonomy and adaptability, scalability, and standards compliance. There is also space for interviewers to add comments in each section and at the end of the form.

File 3 - Filled_Questionnaire_Interviewee_1.pdf: The questionnaire answered by the interviewee 1, with the scores and comments.

FIle 4 - Expert 1 Transcription.docx: The transcripts of the interviewee 1. The original language was not English, so we used OpenAI to generate the English version.

File 5 - Filled_Questionnaire_Interviewee_2.pdf: The questionnaire answered by the interviewee 2, with the scores and comments.

FIle 6 - Expert 2 Transcription.docx: The transcripts of the interviewee 2. The original language was not English, so we used OpenAI to generate the English version.

File 7 - Filled_Questionnaire_Interviewee_3.pdf: The questionnaire answered by the interviewee 3, with the scores and comments.

Expert 3 did not authorize us to release the interviews, so we are not sending the transcripts.
DOI: 10.5281/zenodo.14181658
title: Reference Architecture for Autonomy and Adaptivity in the Space Domain

description: File 1 - Protocol SLR - Reference Architecture for autonomous and adaptive space systems.xlsx: This data extraction worksheet presents the relevant data from the identified studies and provides the selection process in this systematic literature review. The main information reported in this worksheet summarizes the followed protocol, containing an identifier (id) for each returned study. This catalog helped us in the data extraction and synthesis procedures and may be used by potentially interested, for example, for updating or replication. 

File 2 - Interview_Guide_Questionnaire.pdf: The questionnaire was used to guide the interviews and also to ensure consistency between responses. It covers key aspects of the proposed reference architecture, such as general applicability, autonomy and adaptability, scalability, and standards compliance. There is also space for interviewers to add comments in each section and at the end of the form.

File 3 - Filled_Questionnaire_Interviewee_1.pdf: The questionnaire answered by the interviewee 1, with the scores and comments.

FIle 4 - Expert 1 Transcription.docx: The transcripts of the interviewee 1. The original language was not English, so we used OpenAI to generate the English version.

File 5 - Filled_Questionnaire_Interviewee_2.pdf: The questionnaire answered by the interviewee 2, with the scores and comments.

FIle 6 - Expert 2 Transcription.docx: The transcripts of the interviewee 2. The original language was not English, so we used OpenAI to generate the English version.

File 7 - Filled_Questionnaire_Interviewee_3.pdf: The questionnaire answered by the interviewee 3, with the scores and comments.

Expert 3 did not authorize us to release the interviews, so we are not sending the transcripts.
DOI: 10.18112/openneuro.ds005630.v1.0.0
title: The comparison of neural mechanisms underlying prospective vs. retrospective thinkings of sustainable behaviors
DOI: 10.5281/zenodo.13316136
title: Mycokeys: Mycokeys- old

description: MycoKeys is a peer-reviewed, open-access, online and print, rapidly produced journal launched to support free exchange of ideas and information in systematics and biology of fungi (including lichens).
DOI: 10.5281/zenodo.13316137
title: Mycokeys: Mycokeys- old

description: MycoKeys is a peer-reviewed, open-access, online and print, rapidly produced journal launched to support free exchange of ideas and information in systematics and biology of fungi (including lichens).
DOI: 10.5281/zenodo.13316130
title: Mycokeys

description: MycoKeys is a peer-reviewed, open-access, online and print, rapidly produced journal launched to support free exchange of ideas and information in systematics and biology of fungi (including lichens).
DOI: 10.5281/zenodo.13316131
title: Mycokeys

description: MycoKeys is a peer-reviewed, open-access, online and print, rapidly produced journal launched to support free exchange of ideas and information in systematics and biology of fungi (including lichens).
DOI: 10.6084/m9.figshare.27846141
title: DATA ARTICLE.zip

description: Data related to the production of scientific articles.
DOI: 10.6084/m9.figshare.27846141.v1
title: DATA ARTICLE.zip

description: Data related to the production of scientific articles.
DOI: 10.5281/zenodo.13316127
title: Zookeys: ZooKeys (20) XML

description: ZooKeys is a peer-reviewed, open-access, rapidly produced journal launched to support free exchange of ideas and information in systematic zoology. https://zookeys.pensoft.net/

* All papers in ZooKeys are published under a Creative Commons license and can be freely copied, downloaded, printed and distributed at no charge for the reader, provided that the original source is credited.
* Papers are published both online and in the traditional printed format, in full compliance with the current requirements of the International Code for Zoological Nomenclature.
* ZooKeys is published by Pensoft Publishers (13a Geo Milev Str., 1111 Sofia, Bulgaria).
* ZooKeys is the first journal to routinely provide its contents to the EOL on the day of publication.
DOI: 10.5281/zenodo.13316126
title: Zookeys: ZooKeys (20) XML

description: ZooKeys is a peer-reviewed, open-access, rapidly produced journal launched to support free exchange of ideas and information in systematic zoology. https://zookeys.pensoft.net/

* All papers in ZooKeys are published under a Creative Commons license and can be freely copied, downloaded, printed and distributed at no charge for the reader, provided that the original source is credited.
* Papers are published both online and in the traditional printed format, in full compliance with the current requirements of the International Code for Zoological Nomenclature.
* ZooKeys is published by Pensoft Publishers (13a Geo Milev Str., 1111 Sofia, Bulgaria).
* ZooKeys is the first journal to routinely provide its contents to the EOL on the day of publication.
DOI: 10.5281/zenodo.14181641
title: Easy BAM files from practising RNA-seq and exome-seq visualization

description: Two sets of small BAM files for practising RNA-seq and WES visualization (human) 

All data was processed from open access SRA datasets. 

Description:




NAME
RNA-EMT
WES-LUNG


SOURCE
Yang et al. https://doi.org/10.1128/mcb.00019-16, SRA: PRJNA304419
Ju et al. https://doi.org/10.1101/gr.133645.111; SRA: ERP001071)


DESCRIPTION
Human RNA-seq BAM files 
Human WES BAM files: Lung cancer


SEQUENCING TYPE
Illumina paired-end, stranded
Illumina paired-end


METHODS
Original data are from cell lines subjected to epthithelium-mesenchymal transition. We took replicates corresponding to Day 0 (uninduced cells) and Day 7 (7 days after induction). Reads were aligned with STAR. BAM files are restricted to chromosome 18. Gene of interest: CDH2, up in mesenchymal state.
WES were obtained from tumor and blood tissues from a non small cell lung cancer patient. Reads were aligned with BWA. A fraction of sequences corresponding to a panel of genes were retained. Genes of interest: DUSP27, KRAS


MAPPED_TO
HG19
HG19


SAMPLING RATE
0.50%
0.10%


FILE SIZE
2*40Mb
2*7Mb
DOI: 10.5281/zenodo.14181642
title: Easy BAM files from practising RNA-seq and exome-seq visualization

description: Two sets of small BAM files for practising RNA-seq and WES visualization (human) 

All data was processed from open access SRA datasets. 

Description:




NAME
RNA-EMT
WES-LUNG


SOURCE
Yang et al. https://doi.org/10.1128/mcb.00019-16, SRA: PRJNA304419
Ju et al. https://doi.org/10.1101/gr.133645.111; SRA: ERP001071)


DESCRIPTION
Human RNA-seq BAM files 
Human WES BAM files: Lung cancer


SEQUENCING TYPE
Illumina paired-end, stranded
Illumina paired-end


METHODS
Original data are from cell lines subjected to epthithelium-mesenchymal transition. We took replicates corresponding to Day 0 (uninduced cells) and Day 7 (7 days after induction). Reads were aligned with STAR. BAM files are restricted to chromosome 18. Gene of interest: CDH2, up in mesenchymal state.
WES were obtained from tumor and blood tissues from a non small cell lung cancer patient. Reads were aligned with BWA. A fraction of sequences corresponding to a panel of genes were retained. Genes of interest: DUSP27, KRAS


MAPPED_TO
HG19
HG19


SAMPLING RATE
0.50%
0.10%


FILE SIZE
2*40Mb
2*7Mb
DOI: 10.5066/p92brlen
title: Groundwater Time-Series Data at Operable Unit 1, Naval Base Kitsap, Keyport, Washington

description: This Data Release includes time series data collected at Operable Unit 1, Naval Base Kitsap, Keyport, WA. Groundwater elevations and water-quality parameters in ten monitoring wells were monitored every 15 minutes over a 3-week period from 10/15/2019 to 11/05/2019, a period that included neap and spring tides. This data set is a re-deployment of sensors that follow the same methods of the previous July &ndash; August, 2019 deployment. Field deployment details and quality-assurance methods are described in Open-File Report 2019-1098, &ldquo;Analysis of Groundwater Response to Tidal Fluctuations, Operable Unit 1, Naval Base Kitsap, Keyport, Washington&rdquo; (https://doi.org/10.3133/ofr20191098). Groundwater elevations are referenced to the North American [...]
DOI: 10.5281/zenodo.11112360
title: Efficient discrimination between real and complex quantum theories
DOI: 10.5281/zenodo.11112359
title: Efficient discrimination between real and complex quantum theories
DOI: 10.5281/zenodo.14033244
title: Efficient discrimination between real and complex quantum theories
DOI: 10.5281/zenodo.14181503
title: Efficient discrimination between real and complex quantum theories
DOI: 10.15468/dl.sp54kd
title: Occurrence Download

description: A dataset containing 4404 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Hybopsis amblops (Rafinesque, 1820))"
 ]
}

 The dataset includes 4404 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020200-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v2zwrc
title: Occurrence Download

description: A dataset containing 10549888 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((13.16391 42.92494,16.39615 40.83454,17.80456 40.51765,18.43835 39.53176,21.21777 39.47731,18.61917 47.21335,8.57564 47.2668,13.16391 42.92494))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10549888 records from 1323 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020139-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kf9um
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamogeton ×faxonii Morong"
 ]
}

 The dataset includes 57 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020204-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8q34f5
title: Occurrence Download

description: A dataset containing 9364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Python bivittatus Kuhl, 1820",
 "Country is United States of America",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 9364 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020205-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8n5md3
title: Occurrence Download

description: A dataset containing 783 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Brazil",
 "GadmGid is one of (BRA.25.456_2, BRA.25.79_2, BRA.25.120_2, BRA.25.166_2, BRA.25.275_2, BRA.25.475_2, BRA.25.611_2, BRA.25.243_2, BRA.25.584_2)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 783 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020207-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwqs7f
title: Occurrence Download

description: A dataset containing 318903 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Aiphanes deltoidea Burret, Amaranthus caudatus L., Anacardium occidentale L., Annona cherimola Mill., Annona montana Macfad., Annona muricata L., Arracacia xanthorrhiza Bancr., Bactris gasipaes Kunth, Bixa orellana L., Bixa platycarpa Ruiz & Pav. ex G.Don, Calathea allouia (Aubl.) Lindl., Canna indica L., Capsicum annuum L., Capsicum baccatum L., Capsicum chinense Jacq., Capsicum frutescens L., Capsicum pubescens Ruiz & Pav., Chenopodium quinoa Willd., Couepia subcordata Benth. ex Hook.fil., Cucurbita ficifolia Bouché, Cyclanthera brachybotrys (Poepp. & Endl.) Cogn., Cyclanthera pedata (L.) Schrad., Dioscorea trifida Sessé & Moc., 1890, Eugenia uniflora L., Garcinia macrophylla (Miq.) Miq., Gossypium barbadense L., Grias neuberthii J.F.Macbr., Gustavia longifolia Poepp. ex O.Berg, Heliconia chartacea Lane ex Barreiros, Heliconia episcopalis Vell., Heliconia hirsuta Schltdl. & Cham., Heliconia juruana Loes., Heliconia lasiorachis L.Andersson, Heliconia marginata (Griggs) Pittier, Heliconia metallica Planch. & Linden ex Hook., Heliconia orthotricha L.Andersson, Heliconia rostrata Ruiz & Pav., Heliconia spathocircinata Aristeg., Heliconia standleyi J.F.Macbr., Heliconia stricta Huber, Heliconia tenebrosa J.F.Macbr., Heliconia timothei L.Andersson, Heliconia velutina L.Andersson, Jatropha curcas Wall., 1847, Jatropha gossypiifolia L., Jatropha humboldtiana McVaugh, Lepidium meyenii Walp., Lupinus mutabilis Sweet, Manihot esculenta Crantz, Matisia cordata Humb. & Bonpl., Mirabilis expansa (Ruiz & Pav.) Standl., Myrciaria dubia (Kunth) McVaugh, Oenocarpus bataua Mart.)"
 ]
}

 The dataset includes 318903 records from 1541 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020198-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q9qs5c
title: Occurrence Download

description: A dataset containing 1147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Kenya, Uganda, Tanzania, United Republic of, Burundi, Rwanda, Ethiopia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scrophulariaceae"
 ]
}

 The dataset includes 1147 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262161-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sm9vac
title: Occurrence Download

description: A dataset containing 3564 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia",
 "Year 1000-2022"
 ]
}

 The dataset includes 3564 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204464-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9cd7v
title: Occurrence Download

description: A dataset containing 1362 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kickxia lanigera (Desf.) Hand.-Mazz."
 ]
}

 The dataset includes 1362 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001049-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.av4r33
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Living Specimen, Fossil, Specimen, Material citation, Material sample)",
 "Geometry POLYGON((-47.4 73.10725,-107.4 60.70186,-103.8 31.8885,-63 -10.66291,-76.2 -74.08137,-10.2 -84.26343,17.4 -73.74891,-47.4 73.10725))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Limea pygmaea (R.A.Philippi, 1845), Limea argentinae Allen, 2004)"
 ]
}

 The dataset includes 131 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173850-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfsv69
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helictochloa levis (Hack.) Romero Zarco"
 ]
}

 The dataset includes 83 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239821-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.