cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8t8v6
title: Data from: Cell wall microstructure, pore size distribution and absolute density of hemp shiv

description: This paper, for the first time, fully characterises the intrinsic physical
 parameters of hemp shiv including cell wall microstructure, pore size
 distribution and absolute density. Scanning Electron Microscopy revealed
 microstructural features similar to hardwoods. Confocal Microscopy
 revealed three major layers in the cell wall: middle lamella, primary cell
 wall and secondary cell wall. Computed tomography improved the
 visualisation of pore shape and pore connectivity in three dimensions.
 Mercury intrusion porosimetry showed the average accessible porosity was
 76.67 ± 2.03 % and pore size classes could be distinguished into
 micropores (3-10 nm) and macropores (0.1-1 µm and 20-80 µm). The absolute
 density was evaluated by helium pycnometry, mercury intrusion porosimetry
 (MIP) and Archimedes’ methods. The results show that these methods can
 lead to misinterpretation of absolute density. The MIP method showed a
 realistic absolute density (1.45 g/cm3) consistent with the density of the
 known constituents: including lignin, cellulose and hemi-cellulose.
 However, helium pycnometry and Archimedes’ methods gave falsely low values
 due to 10% of the volume being inaccessible pores, which require sample
 pretreatment in order to be filled by liquid or gas. This indicates that
 the determination of the cell wall density is strongly dependent on sample
 geometry and preparation.
description: MIP testing and absolute
 density testingRaw data for MIP testing
 and absolute density testing1000xRED
 autofluorescence Z-stackThe .CZI files can be
 opened by Zen software.
 http.www.zeiss.com/microscopy/us/products/microscopesoftware/zen/czi.html.
DOI: 10.5061/dryad.vh2j751
title: Data from: Alternative tree-cover states of the boreal ecosystem: a conceptual model

description: Aim: Previous analyses of remotely-sensed data detected the multimodality
 of the tree-cover distribution of the boreal forest, and identified areas
 with potentially alternative tree-cover states. This paper aims at
 investigating the causes of multimodality and multistability of the boreal
 forest, their influence on the asymmetric tree-species distribution
 between Eurasia and North America, and whether multistability could be
 associated with recent greening trends in LAI/NDVI. Location: Eurasian and
 North American boreal forests. Time period: 2000--2010. Major taxa
 studied: Boreal forest plant functional types. Methods: We employ a
 conceptual model based on tree-species competition to simulate the
 sensitivity of tree cover to stochastic disturbances and to changes in
 environmental factors. We include different plant functional types based
 on survival adaptations, and force the model with remotely-sensed
 environmental data. We analyse the model as a dynamical system. We use
 metrics from statistics and information theory to compare the detection of
 alternative tree-cover states and greening trends in LAI/NDVI. Results: We
 find that multimodality and multistability can emerge through competition
 between different plant functional types. Additionally, our model is able
 to reproduce the asymmetry in tree-species distribution between Eurasia
 and North America. Moreover, changes in permafrost distribution can be
 associated with phenomenological bifurcation points of the model. Finally,
 we find that the detection of multistable areas is not affected by recent
 vegetation trends, whereas shifts between alternative states could have
 affected the greening trends. Main conclusions: Tree-cover multistability
 in the boreal region can emerge through competition between species
 subject to periodic disturbances. Changes in permafrost thaw and
 distribution could be responsible for the asymmetry in tree-species
 distribution between North America and Eurasia. Climate change and
 permafrost degradation could cause shifts in tree-cover states and
 dominant species. Recent vegetation greening trends in multistable areas
 could have been affected by shifts between alternative states.
description: Supplementary Material
 for Alternative Tree-Cover States of the Boreal Ecosystem: a Conceptual
 ModelSupplementary
 information for the paper "Alternative Tree-Cover States of the
 Boreal Ecosystem: a Conceptual Model" by B. Abis and V. Brovkin, GEB,
 2018. The folder contains a Supplementary Companion for the main
 manuscript, and separate folders containing data and scripts to reproduce
 the results of the paper. Additional information can be found in the
 README file.Supplementary_Conceptual_Dryad.zip
DOI: 10.5061/dryad.kq652
title: Data from: Congruent population structure across paralogous and non-paralogous loci in Salish Sea chum salmon (Oncorhynchus keta)

description: Whole genome duplications are major evolutionary events with a lasting
 impact on genome structure. Duplication events complicate genetic analyses
 as paralogous sequences are difficult to distinguish; consequently
 paralogs are often excluded from studies. The effects of an ancient whole
 genome duplication (approximately 88MYA) are still evident in salmonids
 through the persistence of numerous paralogous gene sequences and partial
 tetrasomic inheritance. We use restriction site-associated DNA sequencing
 (RADseq) on ten collections of chum salmon from the Salish Sea in the USA
 and Canada to investigate genetic diversity and population structure in
 both tetrasomic and re-diploidized regions of the genome. We use a
 pedigree and high-density linkage map to identify paralogous loci and to
 investigate genetic variation across the genome. By applying multivariate
 statistical methods, we show that it is possible to characterize
 paralogous genetic loci and that they display similar patterns of
 population structure as the diploidized portion of the genome. We find
 genetic associations with the adaptively important trait of run timing in
 both sets of loci. By including paralogous loci in genome scans, we can
 observe evolutionary signals in genomic regions that have routinely been
 excluded from population genetic studies in other polyploid-derived
 species.
description: linkage
 mapTab-delimited text file
 giving the linkage group (LG) and cM (centiMorgan) position of each SNP.
 The remaining columns give different identifiers for the positions.
 "Contig" = aligned reference contig. "resolved_locus"
 = genetic locus, for non-duplicated loci this is the contig. For
 paralogous loci, multiple loci are associated with a contig.
 "stacks_CatID" and "stacks_SNP" give the identifiers
 given by the Stacks program. "LEPname" gives the locus
 identifier given by the LEPmap program.Genome scan summary
 statisticsTab-delimited text file
 giving summary statistics for each locus. See the README for column
 descriptions.genome
 scan.txtStacks Haplotypes.tsv
 file"Haplotypes"
 file produced by Stacks, in text format. See Stacks
 documentation.complete.haplotypes.tsvnon_paralogs.mapLocus list (in PLINK .map format) of non-paralogous loci. Associated with non_paralogous.pednon_paralogs.pedGenotype data (in PLINK .ped format) for non-paralogous loci. For use with the non_paralogs.map file.complete.dom.mapLocus list for the dominance-coded data set with both non-paralogous and paralogous loci (in PLINK .map format).complete.dom.txtnon-delimited text file with Genotype data for dominance-coded genotypes at paralogous and non-paralogous loci. Each genotype takes one character: 1 = present, 0 = absent, 9 = missing. One row per locus, loci are given in complete.dom.map. One column per individual, individuals are listed in non_paralogs.ped.
DOI: 10.5061/dryad.40j0j
title: Data from: Smooth enlargement of human standing sway by instability due to weak reaction floor and noise

description: Human quiet standing is accompanied by body sway. The amplitude of this
 body sway is known to be larger than would be predicted from simple noise
 effects, and sway characteristics are changed by neurological disorders.
 This large sway is thought to arise from nonlinear control with prolonged
 periods of no control (intermittent control), and a nonlinear control
 system of this kind has been predicted to exhibit bifurcation. The
 presence of stability-dependent transition enables dynamic reaction that
 depends on the stability of the environment, and can explain the change in
 sway characteristics that accompanies some neurological disorders. This
 research analyses the characteristics of a system model that induces
 transition, and discusses whether human standing reflects such a
 mechanism. In mathematical analysis of system models, (intermittent
 control-like) nonlinear control with integral control is shown to exhibit
 Hopf bifurcation. Moreover, from the analytical solution of the system
 model with noise, noise is shown to work to smooth the enlargement of sway
 around the bifurcation point. This solution is compared with measured
 human standing sway on floors with different stabilities. By
 quantitatively comparing the control parameters between human observation
 and model prediction, enlargement of sway is shown to appear as predicted
 by the model analysis.
description: COP Fixed
 FloorCOP data of human
 subjects on a fixed floor.fixedFloor.xlsxCOP Rotational FloorCOP data of human subjects on a rotational floor.rotFloor.xlsx
DOI: 10.5061/dryad.ck1rq
title: Data from: Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population

description: Clutch size and egg mass are life history traits that have been
 extensively studied in wild bird populations, as life history theory
 predicts a negative trade-off between them, either at the phenotypic or
 genetic level. Here, we analyse the genomic architecture of these
 heritable traits in a wild great tit (Parus major) population, using three
 marker-based approaches - chromosome partitioning, quantitative trait
 locus (QTL) mapping and a genome-wide association study (GWAS). The
 variance explained by each great tit chromosome scales with predicted
 chromosome size, no location in the genome contains genome-wide
 significant QTL, and no individual SNPs are associated with a large
 proportion of phenotypic variation, all of which may suggest that
 variation in both traits is due to many loci of small effect, located
 across the genome. There is no evidence that any regions of the genome
 contribute significantly to both traits, which combined with a small,
 non-significant, negative genetic covariance between the traits, suggests
 the absence of genetic constraints on the independent evolution of these
 traits. Our findings support the hypothesis that variation in life history
 traits in natural populations is likely to be determined by many loci of
 small effect spread throughout the genome, which are subject to continued
 input of variation by mutation and migration, although we cannot exclude
 the possibility of an additional input of major effect genes influencing
 either trait.
description: 2497_indiv_5591_markersThe 2497_indiv_5591_markers.map file is a file of marker names and positions, slightly amended from the plink format with column headings: chromosome, marker_name, marker_order, genetic_distance_(cM). For more information see the ReadMe.txt file.2497_indiv_5591_markersThe .ped file is a file of genotypes in plink style (see http://pngu.mgh.harvard.edu/~purcell/plink/). The column headings are: Family ID, Individual ID, Paternal ID, Maternal ID, Sex (1=male; 2=female; other=unknown), Phenotype (followed by the genotypes). For more information see the ReadMe.txt file2497_indiv_phenotype2497_indiv_phenotype.txt file. This file contains the phenotypes used in the analysis. Note that phenotypes are not available for all genotyped individuals. For more information please see the ReadMe.txt file
DOI: 10.5061/dryad.6b65r
title: Data from: Regional heritability mapping method helps explain missing heritability of blood lipid traits in isolated populations

description: Single single-nucleotide polymorphism (SNP) genome-wide association
 studies (SSGWAS) may fail to identify loci with modest effects on a trait.
 The recently developed regional heritability mapping (RHM) method can
 potentially identify such loci. In this study, RHM was compared with the
 SSGWAS for blood lipid traits (high-density lipoprotein (HDL), low-density
 lipoprotein (LDL), plasma concentrations of total cholesterol (TC) and
 triglycerides (TG)). Data comprised 2246 adults from isolated populations
 genotyped using ~300 000 SNP arrays. The results were compared with large
 meta-analyses of these traits for validation. Using RHM, two significant
 regions affecting HDL on chromosomes 15 and 16 and one affecting LDL on
 chromosome 19 were identified. These regions covered the most significant
 SNPs associated with HDL and LDL from the meta-analysis. The chromosome 19
 region was identified in our data despite the fact that the most
 significant SNP in the meta-analysis (or any SNP tagging it) was not
 genotyped in our SNP array. The SSGWAS identified one SNP associated with
 HDL on chromosome 16 (the top meta-analysis SNP) and one on chromosome 10
 (not reported by RHM or in the meta-analysis and hence possibly a false
 positive association). The results further confirm that RHM can have
 better power than SSGWAS in detecting causal regions including regions
 containing crucial ungenotyped variants. This study suggests that RHM can
 be a useful tool to explain some of the ‘missing heritability’ of complex
 trait variation.
description: Summary statistics for
 Single SNP GWASSummary statistics for
 Single SNP GWAS for for blood lipid traits (high-density lipoprotein
 (HDL), low-density lipoprotein (LDL), plasma concentrations of total
 cholesterol (TC) and triglycerides (TG) in R Data file.SSGWAS summary statistics
 .RDataSummary statistics for
 Regional Heritability MappingSummary statistics for
 Regional Heritability Mapping method for blood lipid traits (high-density
 lipoprotein (HDL), low-density lipoprotein (LDL), plasma concentrations of
 total cholesterol (TC) and triglycerides (TG) in R Data
 file.RHM100
 summary statistics .RData
DOI: 10.5061/dryad.80476
title: Data from: Face patch resting state networks link face processing to social cognition

description: Faces transmit a wealth of social information. How this information is
 exchanged between face-processing centers and brain areas supporting
 social cognition remains largely unclear. Here we identify these routes
 using resting state functional magnetic resonance imaging in macaque
 monkeys. We find that face areas functionally connect to specific regions
 within frontal, temporal, and parietal cortices, as well as subcortical
 structures supporting emotive, mnemonic, and cognitive functions. This
 establishes the existence of an extended face-recognition system in the
 macaque. Furthermore, the face patch resting state networks and the
 default mode network in monkeys show a pattern of overlap akin to that
 between the social brain and the default mode network in humans: this
 overlap specifically includes the posterior superior temporal sulcus,
 medial parietal, and dorsomedial prefrontal cortex, areas supporting
 high-level social cognition in humans. Together, these results reveal the
 embedding of face areas into larger brain networks and suggest that the
 resting state networks of the face patch system offer a new, easily
 accessible venue into the functional organization of the social brain and
 into the evolution of possibly uniquely human social skills.
description: Face patch resting state
 mapsUncorrected F-statistics
 for each face patch (AM, AF, AL, MF, ML, PL, PO) from the surface-based
 FFX group analysis, by hemisphere. These MGH files were generated using
 the freely available FreeSurfer package, a software application developed
 at the Martinos Center for Biomedical Imaging by the Laboratory for
 Computational Neuroimaging, available at
 The MGH files can be opened with this
 program, and converted into other formats, for example for example Caret
 or AFNI, if necessary.face_patch_resting_state_maps.zipFace patch resting state maps (single subjects)Uncorrected F-statistics for each face patch (AM, AF, AL, MF, ML, PL, PO) for each subject, by hemisphere. These NIfTI files were generated using the freely available FreeSurfer package, a software application developed at the Martinos Center for Biomedical Imaging by the Laboratory for Computational Neuroimaging, available at , and files may be viewed using this software. The NIfTI files are four-dimensional. Each file contains six 3D maps, one per subject.face_patch_resting_state_maps_single_subjects.zip
DOI: 10.5061/dryad.fg2b0
title: Data from: The largest early-diverging angiosperm family is mostly pollinated by ovipositing insects and so are most surviving lineages of early angiosperms

description: Insect pollination in basal angiosperms is assumed to mostly involve
 ‘generalized’ insects looking for food, but direct observation of ANITA
 grade (283 species) pollinators are sparse. We present new data for
 numerous Schisandraceae, the largest ANITA family, from field work,
 nocturnal filming, electron microscopy, barcoding, and molecular clocks to
 infer pollinator/plant interactions over multiple years at sites
 throughout China to test the extent of pollinator specificity.
 Schisandraceae are pollinated by nocturnal gall midges that lay eggs in
 the flowers and whose larvae then feed on floral exudates. At least three
 Schisandraceae have shifted to beetle pollination. Pollination by a single
 midge species predominates, but one species was pollinated by different
 species at three locations and one by two at the same location. Based on
 molecular clocks, gall midges and Schisandraceae may have interacted since
 at least the Early Miocene. Combining these data with a review of all
 published ANITA pollination data shows that ovipositing flies are the most
 common pollinators of living representatives of the ANITA grade. Compared
 to food reward-based pollination, oviposition-based systems are less
 wasteful of plant gametes because (i) none are eaten and (ii) female
 insects with herbivorous larvae reliably visit conspecific flowers.
description: Luo_PRSB_Movie1_Kadsura_heteroclita_male_fl_Pinganshan_2015Video S1. Resseliella midges visiting and ovipositing in a male flower of Kadsura heteroclita filmed by the first author in 2015 in Pinganshan, Forest Park, Guangdong, China.Luo_PRSB_Movie2_Kadsura_oblongifolia_female_fl_Danzhou_Hainan_2016Video S2. Resseliella midges visiting and ovipositing in a female flower of Kadsura oblongifolia filmed by the first author in 2016 in Danzhou, Hainan, China.Luo_PRSB_Movie3_Schisandra_spec_Wang_193_male_fl_Hengshan_2015Video S3. Resseliella midges visiting and ovipositing in a male flower of Schisandra spec._Wang_Z.W. 193 filmed by the first author in 2015 in Hengshan, Hunan, China.Luo_PRSB_Movie4_Kadsura_longipedunculata_male_fl_Hengshan_1_2017Video S4. Resseliella midges visiting and ovipositing in Kadsura longipedunculata, filmed by the first author in 2017 in Hengshan, Hunan, China.
DOI: 10.5517/ccdc.csd.cc2pln21
title: CCDC 2490573: Experimental Crystal Structure Determination

description: Related Article: Xiaoying Jia, Xueru Liu, Xiaoqing Wang, Ying Yang, Wei Zuo, Chuandong Jia|2026|Cryst.Growth Des.|||doi:10.1021/acs.cgd.5c01708
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.34968
title: togoogle: Case study with corpus linguistic approach

description: This is visualized data used in a case study
DOI: 10.5281/zenodo.15570961
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250601d Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250601d Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15570962
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250601d Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250601d Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.15468/dl.kw6vxa
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Peru",
 "TaxonKey is Lama guanicoe (Müller, 1776)",
 "Year 2000-2025"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014336-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25yscr
title: Occurrence Download

description: A dataset containing 30713 species occurrences available in GBIF matching the query:
{
 "or" : [
 "Geometry POLYGON((-75.9986 6.57006,-75.97135 6.59311,-75.97135 6.59381,-75.97415 6.59381,-75.9986 6.57006))",
 "Geometry POLYGON((-75.95948 6.60988,-75.97834 6.5994,-76.01326 6.58264,-76.02304 6.56308,-76.03352 6.53234,-76.03981 6.5051,-76.03352 6.49253,-76.01326 6.49253,-75.99231 6.49392,-75.98253 6.48903,-75.96996 6.48484,-75.96576 6.47087,-75.95738 6.4576,-75.94621 6.46109,-75.94062 6.44922,-75.94411 6.43455,-75.94411 6.41359,-75.93503 6.39683,-75.91058 6.39683,-75.9029 6.40661,-75.88753 6.4108,-75.86169 6.4108,-75.85051 6.39962,-75.83374 6.40102,-75.82257 6.40451,-75.81838 6.42966,-75.82397 6.44363,-75.82257 6.49183,-75.82117 6.51558,-75.8072 6.51697,-75.80091 6.54771,-75.79812 6.58124,-75.81209 6.61197,-75.83235 6.65179,-75.83724 6.65877,-75.83305 6.68113,-75.84143 6.68462,-75.84911 6.67903,-75.86238 6.64969,-75.87286 6.64061,-75.88194 6.6476,-75.88264 6.63852,-75.89382 6.62944,-75.91407 6.65598,-75.92106 6.64411,-75.93154 6.61966,-75.95179 6.60848,-75.95948 6.60988))"
 ]
}

 The dataset includes 30713 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014335-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/p12m-8386
title: "Acoustic and Seismic Dataset for Mobile Target Recognition"

description: "In this paper, a multi-terrain noise environment dataset (ASD) is constructed for noisy conditions (distant highway noise and train trip noise). The dataset contains three types of noise: environmental noise (natural sound and sensor vibration), human activity noise (human voice\/footsteps) and wheeled vehicle noise (engine\/driving noise), and was collected by deploying sensors through both soft ground pinning and hard ground surface placement. The total data amounted to 17,395 seconds (training set: 5,639 seconds for environment, 6,585 seconds for human activities, 5,171 seconds for vehicles; test set: 357 seconds for environment, 343 seconds for human activities, 358 seconds for vehicles), normalized to a unit of 1 second. unit normalized segmentation."