cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1815343720
title: Structural study of Human endogenous canonical pre-mRNA 3’-end processing complex

description: Processing of the 3’-end of precursor messenger RNAs (pre-mRNAs) is a central step in mRNA maturation, which is fundamentalAbstract:
for mRNA stability and translation and, ultimately, for cell viability. Most of pre-mRNAs (canonical mRNAs) are cleaved and polyadenylated by
a large multi-protein complex, the deregulation of which is associated to serious human diseases. Thus, subunits of this RNA processing
machinery are becoming increasingly attractive as drug targets. An example is CPSF3, the endonuclease responsible for pre-mRNAs cleavage
and a promising therapeutic target for the treatment of human cancers (AML, Ewing’s sarcoma). Further investigations of the human
canonical pre-mRNA processing complex as drug target requires a deep knowledge of the molecular mechanism deployed by this machinery,
including its structure and function. Our project aims at grasping this knowledge by unravelling the architecture and mechanisms of the
human endogenous 3’-end pre-mRNA processing complex.
DOI: 10.5281/zenodo.11033719
title: Data for "Diastereoselective Self-Assembly of Low-Symmetry PdnL2n Nanocages through Coordination-Sphere Engineering"

description: In the following subdirectories are the input and outputs of cage and face analysis for:

Published DOI: 10.1002/anie.202315451

Previously uploaded in 10.5281/zenodo.8432296 and https://github.com/andrewtarzia/citable_data

Note that all scripts are self-contained. There is some duplicate code between them.



scripts:









build_cages.py:





Builds the Pd2L4 cage models.

Some manual optimisation is assumed.

Paths for xTB and GULP are set to my machine.

All outputs are relative to working directory.









build_dwall_triangles.py:





Builds the Pd3L6 cage models.

Some manual optimisation is assumed.

Paths for xTB and GULP are set to my machine.

All outputs are relative to working directory.
DOI: 10.5281/zenodo.11033720
title: Data for "Diastereoselective Self-Assembly of Low-Symmetry PdnL2n Nanocages through Coordination-Sphere Engineering"

description: In the following subdirectories are the input and outputs of cage and face analysis for:

Published DOI: 10.1002/anie.202315451

Previously uploaded in 10.5281/zenodo.8432296 and https://github.com/andrewtarzia/citable_data

Note that all scripts are self-contained. There is some duplicate code between them.



scripts:









build_cages.py:





Builds the Pd2L4 cage models.

Some manual optimisation is assumed.

Paths for xTB and GULP are set to my machine.

All outputs are relative to working directory.









build_dwall_triangles.py:





Builds the Pd3L6 cage models.

Some manual optimisation is assumed.

Paths for xTB and GULP are set to my machine.

All outputs are relative to working directory.
DOI: 10.5281/zenodo.12730768
title: Data for "Diastereoselective Self-Assembly of Low-Symmetry PdnL2n Nanocages through Coordination-Sphere Engineering"

description: In the following subdirectories are the input and outputs of cage and face analysis for:

Published DOI: 10.1002/anie.202315451

Previously uploaded in 10.5281/zenodo.8432296 and https://github.com/andrewtarzia/citable_data

Note that all scripts are self-contained. There is some duplicate code between them.



scripts:









build_cages.py:





Builds the Pd2L4 cage models.

Some manual optimisation is assumed.

Paths for xTB and GULP are set to my machine.

All outputs are relative to working directory.









build_dwall_triangles.py:





Builds the Pd3L6 cage models.

Some manual optimisation is assumed.

Paths for xTB and GULP are set to my machine.

All outputs are relative to working directory.
DOI: 10.15468/dl.9nr8um
title: Occurrence Download

description: A dataset containing 636 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Solidago discoidea (Elliott) Torr. & A.Gray, Brintonia discoidea (Elliott) Greene, Solidago discoidea Elliott)"
 ]
}

 The dataset includes 636 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021548-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6v3jr
title: Occurrence Download

description: A dataset containing 979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepus saxatilis F.Cuvier, 1823",
 "HasCoordinate is true"
 ]
}

 The dataset includes 979 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032762-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ectyz
title: Occurrence Download

description: A dataset containing 20215886 species occurrences available in GBIF matching the query:
{
 "and" : [
 "IucnRedListCategory is one of (EN, CR, VU)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 1990-2025"
 ]
}

 The dataset includes 20215886 records from 5343 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032731-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hugftv
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Dromius melanocephalus Dejean, 1825",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023275-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13955506
title: cyanomitra_olivaceus_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13955507
title: cyanomitra_olivaceus_zanfona_1.fasta.gz
DOI: 10.15468/dl.q3rknt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Dromius quadrinotatus (Zenker, 1800)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023276-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10942405
title: COS Change

description: The dataset contains vector files, in the geopackage format, depicting changes in land cover class level 1 for the mainland area of Portugal, derived from the Land Use Maps (COS). It consists of 4 files, representing the four intervals between the five available COS: 1995-2007, 2007-2010, 2010-2015, 2015-2018, and 1 file for the entire period 1995-2018. The projection used is EPSG:3763 - ETRS89 / Portugal TM06. Additionally, the dataset includes a document detailing the methodology employed to produce the COS-Change files.
DOI: 10.5281/zenodo.10942406
title: COS Change

description: The dataset contains vector files, in the geopackage format, depicting changes in land cover class level 1 for the mainland area of Portugal, derived from the Land Use Maps (COS). It consists of 4 files, representing the four intervals between the five available COS: 1995-2007, 2007-2010, 2010-2015, 2015-2018, and 1 file for the entire period 1995-2018. The projection used is EPSG:3763 - ETRS89 / Portugal TM06. Additionally, the dataset includes a document detailing the methodology employed to produce the COS-Change files.
DOI: 10.15468/dl.phpu8f
title: Occurrence Download

description: A dataset containing 907 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Epitrix pubescens (Koch, 1803)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 907 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023277-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3bdxvp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Euophryum rufum (Broun, 1880)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023279-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xaxcnv
title: Occurrence Download

description: A dataset containing 63577 records in GBIF matching the query:
SELECT gbif_eeargCode(10000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 10000)) AS eeaCellCode, COUNT(*) AS 'count', COUNT(DISTINCT recordedBy) AS distinctObservers, MIN(COALESCE(coordinateUncertaintyInMeters, 10000)) AS minCoordinateUncertaintyInMeters FROM occurrence WHERE occurrenceStatus = 'PRESENT' AND orderKey = 797 AND NOT array_contains(issue, 'ZERO_COORDINATE') AND NOT array_contains(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT array_contains(issue, 'COORDINATE_INVALID') AND NOT array_contains(issue, 'COUNTRY_COORDINATE_MISMATCH') AND (identificationVerificationStatus IS NULL OR NOT ( LOWER(identificationVerificationStatus) LIKE '%unverified%' OR LOWER(identificationVerificationStatus) LIKE '%unvalidated%' OR LOWER(identificationVerificationStatus) LIKE '%not able to validate%' OR LOWER(identificationVerificationStatus) LIKE '%control could not be conclusive due to insufficient knowledge%' OR LOWER(identificationVerificationStatus) LIKE '%unconfirmed%' OR LOWER(identificationVerificationStatus) LIKE '%unconfirmed - not reviewed%' OR LOWER(identificationVerificationStatus) LIKE '%validation requested%' ) ) AND "year" &gt;= 2014 AND "year" &lt;= 2023 AND continent = 'EUROPE' AND hasCoordinate GROUP BY eeaCellCode ORDER BY eeaCellCode ASC;

 The dataset's 63577 records were derived from 6980 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023264-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6cghb4
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum thiurum J.J.Verm. & P.O'Byrne"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074989-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqy7kv
title: Occurrence Download

description: A dataset containing 36003 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tangara Brisson, 1760",
 {
 "or" : [
 "Country is Colombia",
 "Country is Mexico"
 ]
 }
 ]
}

 The dataset includes 36003 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027559-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pp5afw
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "TaxonKey is Erysimum pirinicum Ancev & Polatschek"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065037-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5civn
title: Occurrence Download

description: A dataset containing 131754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mozambique",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 131754 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023470-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzhaqb
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum elasmatopus Schltr."
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074994-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcayc8
title: Occurrence Download

description: A dataset containing 16405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Helianthus annuus L.",
 "Country is one of (United States of America, Canada)",
 "Year is greater than or equal to 1979"
 ]
}

 The dataset includes 16405 records from 176 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017689-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cngdoc
title: Occurrence Download

description: A dataset containing 10020 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aporrectodea Orley, 1885"
 ]
}

 The dataset includes 10020 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023471-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7ye75
title: Occurrence Download

description: A dataset containing 445 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canavalia sericea A.Gray"
 ]
}

 The dataset includes 445 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074991-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rr29a3
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (Thailand, Viet Nam, Malaysia)",
 "TaxonKey is Bos gaurus C.H.Smith, 1827",
 "Year 1993-2023"
 ]
}

 The dataset includes 99 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015868-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3oykfg
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aglae caerulea Lepeletier & Audinet-Serville, 1825"
 ]
}

 The dataset includes 21 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023472-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yt57nk
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Burmannia malasica Jonker"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075109-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.326gxa
title: Occurrence Download

description: A dataset containing 27043 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is GBR",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 27043 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015878-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhsvb6
title: Occurrence Download

description: A dataset containing 814 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Material sample",
 "DatasetKey is DNA and Tissue Bank of the Natural History Museum of Denmark"
 ]
}

 The dataset includes 814 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023473-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73qwum
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Crotalus angelensis Klauber, 1963"
 ]
}

 The dataset includes 85 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075118-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qu75eg
title: Occurrence Download

description: A dataset containing 35296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lampyris noctiluca (Linnaeus, 1758)"
 ]
}

 The dataset includes 35296 records from 506 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019627-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iedrhe
title: Occurrence Download

description: A dataset containing 814 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Material sample",
 "DatasetKey is DNA and Tissue Bank of the Natural History Museum of Denmark"
 ]
}

 The dataset includes 814 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023474-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jx74v
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canavalia vitiensis J.D.Sauer"
 ]
}

 The dataset includes 15 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075010-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnndud
title: Occurrence Download

description: A dataset containing 1714 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Urocissa erythrorhyncha (Boddaert, 1783)"
 ]
}

 The dataset includes 1714 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023477-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jm5gu8
title: Occurrence Download

description: A dataset containing 364 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chlamydoselachus anguineus Garman, 1884"
 ]
}

 The dataset includes 364 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019634-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8ysdn
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum elevatopunctatum J.J.Sm."
 ]
}

 The dataset includes 17 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075073-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gg5tt
title: Occurrence Download

description: A dataset containing 2314 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rana iberica Boulenger, 1879"
 ]
}

 The dataset includes 2314 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023478-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.794juv
title: Occurrence Download

description: A dataset containing 463 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chlorella sorokiniana Shihira & Krauss, 1965"
 ]
}

 The dataset includes 463 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023951-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmh9p3
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Eunectes murinus (Linnaeus, 1758))"
 ]
}

 The dataset includes 193 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075132-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.