cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5545881
title: Imaging Mass Cytometry of human normal colon mucosa (CLN1-6) from: A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially resolved tissue phenotyping at single-cell resolution.

description: Four µm-thick sections were cut from each block of samples CLN1-CLN6 with a microtome and used for staining with a panel of 26 antibodies targeting the main immune, stromal and epithelial cell populations of the gastrointestinal tract (Supplementary Table 2). The optimal dilution of each antibody in the panel was identified by staining and ablating FFPE appendix sections. The resulting images were reviewed by a mucosal immunologist (J.S.) and the dilution giving the best signal to background ratio was selected for each antibody (Supplementary Table 2). To perform the staining for IMC, slides were dewaxed after a one-hour incubation at 60°C, rehydrated and heat-induced antigen retrieval was performed with a pressure cooker in Antigen Retrieval Reagent-Basic (R&D Systems). Slides were incubated in a 10% BSA (Sigma), 0.1% Tween (Sigma), and 2% Kiovig (Shire Pharmaceuticals) Superblock Blocking Buffer (Thermo Fisher) blocking solution at room temperature for two hours. Each antibody was added to a primary antibody mix at the selected concentration in blocking solution and incubated overnight at 4°C. After two washes in PBS and PBS-0.1% Tween, the slides were treated with the DNA intercalator Cell-ID™ Intercalator-Ir (Fluidigm) (containing the two iridium isotopes 191Ir and 193Ir) 1.25 mM in a PBS solution. After a 30-minute incubation, the slides were washed once in PBS and once in MilliQ water and air-dried. The stained slides were then loaded in the Hyperion Imaging System (Fluidigm) imaging module to obtain light-contrast high resolution images of approximately four mm<sup>2</sup>. These images were used to select the ROI in each slide. For CLN1-CLN6, 1 mm<sup>2 </sup>ROIs were selected to contain the full thickness of the colon mucosa, with epithelial crypts in longitudinal orientation. ROIs were ablated at a o µm/pixel resolution and 200 Hz frequency. Twenty-eight images from 26 antibodies (Supplementary Table 2) and two DNA intercalators were obtained from the raw .txt files of the ablated regions in CLN1-CLN6 using the data extraction process.
description: .mcd files with one or more ablated ROIs channel_metadata.csv = Assigns each metal/channel to the corresponding marker raw_file_metadata.csv = Assigns each sample to an ROI and a .mcd file
DOI: 10.5281/zenodo.5545901
title: Ara ararauna decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5545900
title: Ara ararauna decontaminated FSCR

description: .
DOI: 10.15151/esrf-es-565940989
title: PROTEINS RELATED TO PATHOGENESIS OF DISEASES, VIRAL PROTEINS, CELL DIVISION, SIGNALLING AND CHROMATIN PROCESSES

description: Our BAG is composed of seven PIs at six different institutions in Italy and Austria. We focus on different protein targets and address diverse biological contexts by combining structural biology with biochemistry, biophysics, cellular and in vivo investigations.
DOI: 10.5281/zenodo.5545914
title: Comparative Analysis of Complete Chloroplast Genomes of 13 Species in Epilobium, Circaea, and Chamaenerion and Insights into Phylogenetic Relationships of Onagraceae

description: This is all the alignments which used to constructed a phylogenetic tree in our study about Onagraceae. The evening primrose family, Onagraceae, is a well defined family of the order Myrtales, which comprises 22 genera widely distributed from boreal to tropical areas. In the present study, we report and characterize the complete chloroplast genome sequences of 13 species in <em>Circaea</em>,<em> Chamaenerion</em>, and <em>Epilobium</em> using a next-generation sequencing method. We also retrieved plastome sequences from two other Onagraceae genera to characterize the chloroplast genome of the family. The complete plastomes of Onagraceae showed a typical quadripartite structure and encoded an identical set of 112 genes (with exclusion of duplication), including 78 protein-coding genes, 30 transfer RNAs, and four ribosomal RNAs. The results show that chloroplast genomes are basically conserved in gene arrangement across the family. Whereas, a large segment of inversion was detected in the LSC region of all samples in the<em> Oenothera </em>subsect. <em>Oenothera</em>. An inverted repeat (IR) contraction was found in <em>Circaea</em> and<em> Ludwigia </em>samples. We also compared chloroplast genomes across the Onagraceae samples and revealed similarities in some features, including nucleotide content, codon usage, RNA editing sites, and simple sequence repeats (SSRs). Phylogeny was inferred by the chloroplast genome data using maximum-likelihood (ML) and Bayesian inference (BI) methods. The generic relationship of Onagraceae was well resolved by the complete plastome sequences, showing potential value in inferring phylogeny within the family. <em>Oenothera </em>phylogeny was better resolved than other densely sampled genera. Biparental transmission may be the main cause of higher variation in the genus<em> Oenothera</em>.
DOI: 10.5281/zenodo.5545913
title: Comparative Analysis of Complete Chloroplast Genomes of 13 Species in Epilobium, Circaea, and Chamaenerion and Insights into Phylogenetic Relationships of Onagraceae

description: This is all the alignments which used to constructed a phylogenetic tree in our study about Onagraceae. The evening primrose family, Onagraceae, is a well defined family of the order Myrtales, which comprises 22 genera widely distributed from boreal to tropical areas. In the present study, we report and characterize the complete chloroplast genome sequences of 13 species in <em>Circaea</em>,<em> Chamaenerion</em>, and <em>Epilobium</em> using a next-generation sequencing method. We also retrieved plastome sequences from two other Onagraceae genera to characterize the chloroplast genome of the family. The complete plastomes of Onagraceae showed a typical quadripartite structure and encoded an identical set of 112 genes (with exclusion of duplication), including 78 protein-coding genes, 30 transfer RNAs, and four ribosomal RNAs. The results show that chloroplast genomes are basically conserved in gene arrangement across the family. Whereas, a large segment of inversion was detected in the LSC region of all samples in the<em> Oenothera </em>subsect. <em>Oenothera</em>. An inverted repeat (IR) contraction was found in <em>Circaea</em> and<em> Ludwigia </em>samples. We also compared chloroplast genomes across the Onagraceae samples and revealed similarities in some features, including nucleotide content, codon usage, RNA editing sites, and simple sequence repeats (SSRs). Phylogeny was inferred by the chloroplast genome data using maximum-likelihood (ML) and Bayesian inference (BI) methods. The generic relationship of Onagraceae was well resolved by the complete plastome sequences, showing potential value in inferring phylogeny within the family. <em>Oenothera </em>phylogeny was better resolved than other densely sampled genera. Biparental transmission may be the main cause of higher variation in the genus<em> Oenothera</em>.
DOI: 10.6084/m9.figshare.16726282
title: Prisma checklist

description: This dataset is used for systematic literature review using Prisma checklist and flow diagram
DOI: 10.6084/m9.figshare.16726282.v1
title: Prisma checklist

description: This dataset is used for systematic literature review using Prisma checklist and flow diagram
DOI: 10.5281/zenodo.5545676
title: All data for proChIPdb database website

description: All data for proChIPdb (previously ChIP-pro) database available at prochipdb.org as of 10/01/2021. The GitHub repository here is also publicly available and contains the most up-to-date data.
DOI: 10.5281/zenodo.5168080
title: All data for proChIPdb database website

description: All data for proChIPdb (previously ChIP-pro) database available at prochipdb.org as of 10/01/2021. The GitHub repository here is also publicly available and contains the most up-to-date data.
DOI: 10.21227/0ada-9561
title: Python supplymentary files

description: Thermal drift is a significant problem in measurement technologies that leads to nonlinear behavior in sensorsand other measurement technologies. This research paper investigates the thermal drift problem and their remedialmeasures in a current sensor implemented in distribution systems and industries. The conventional corrective actionsinvolve signal conditioning circuits, which are influenced by ambient temperature change. In the proposed method,a similar approach of thermal drift correction involving a novel thermal sensor and amplitude modulated feedbackcompensation circuit is discussed. The novelty of this paper lies in the design of a thermal sensor with improved zincoxide solution-based dielectric and a feedback compensation circuit with an amplitude modulation feature to enhancethe thermal sensor performance. Parameters of the proposed thermal sensors are arranged in the form of requiredequations, and necessary mathematical models are derived to accurately predict the proposed model’s behavior. Awire-wound Hall effect-based current sensor with a 0.681%/K thermal drift is considered for analysis with a proposedfeedback compensation circuit. Finally, it is experimentally found that, with the implementation of the proposed thermaldrift reduction circuit involving the novel thermal sensor design, the thermal drift of the current sensor is reduced downto 0.000143%/K in the temperature range of 293K to 403K.
DOI: 10.6084/m9.figshare.16726267
title: Un-matched (lower than species-level) sequences larval fishes from the Zhongsha Atoll and their best-matched sequences from the NCBI or BOLD systems

description: This fas. file contains un-matched sequences of larval fishes collected in the Zhongsha Atoll and their best-matched sequences from the NCBI or BOLD systems. The sequences can be used to perform a ML tree to affirm taxa names of larval fishes.
DOI: 10.6084/m9.figshare.16726267.v1
title: Un-matched (lower than species-level) sequences larval fishes from the Zhongsha Atoll and their best-matched sequences from the NCBI or BOLD systems

description: This fas. file contains un-matched sequences of larval fishes collected in the Zhongsha Atoll and their best-matched sequences from the NCBI or BOLD systems. The sequences can be used to perform a ML tree to affirm taxa names of larval fishes.
DOI: 10.5281/zenodo.5536938
title: Pooled test repertoires from haemophilia/FVIII study

description: Pooled test repertoires from haemophilia/FVIII study
DOI: 10.5281/zenodo.5536937
title: Pooled test repertoires from haemophilia/FVIII study

description: Pooled test repertoires from haemophilia/FVIII study
DOI: 10.17903/fk2/iot6qh
title: Ποιοτική Διερεύνηση Φορέων Συμβουλευτικής για την Ένταξη στην Απασχόληση.

description: Η έρευνα είχε σκοπό τη μελέτη οργανισμών που στοχεύουν να υποστηρίξουν ανέργους ή μέλη ομάδων, που αντιμετωπίζουν αυξημένα εμπόδια πρόσβασης στην αγορά εργασίας, να ενταχθούν στο σύστημα της απασχόλησης. Εξετάζεται η λειτουργία των οργανισμών αυτών μέσα από τις οπτικές των υποκειμένων που δραστηριοποιούνται εντός τους (Δ/ντές, Σύμβουλοι, Ωφελούμενοι). Η έρευνα βασίστηκε στην επιτόπια διερεύνηση 25 «δομών» συμβουλευτικής σε όλη την Ελλάδα, που πραγματοποιήθηκε από την Άνοιξη έως το Φθινόπωρο του 2003. Από αυτές 7 μελέτες περίπτωσης πραγματοποιήθηκαν σε Κέντρα Προώθησης της Απασχόλησης (ΚΠΑ) του ΟΑΕΔ και οι 18 πραγματοποιήθηκαν σε «δομές» του «ενδιάμεσου τομέα», εποπτευόμενες δηλαδή δομές από Οργανισμούς Τοπικής Αυτοδιοίκησης (ΟΤΑ) ή Μη Κυβερνητικές Οργανώσεις (ΜΚΟ). Η έρευνα εστίασε (α) στους όρους, στις συνθήκες καθώς και στις διαδικασίες ίδρυσης και μετεξέλιξης των φορέων, (β) στις απόψεις και στις αντιλήψεις των υπευθύνων των φορέων σχετικά με τους σκοπούς και τη λειτουργία τους, (γ) στο επιστημονικό προφίλ, στην επαγγελματική σταδιοδρομία και στην επαγγελματική κουλτούρα των συμβούλων. Τα ευρήματα της έρευνας επιτρέπουν να υποστηριχθεί πως οι διαδικασίες της συμβουλευτικής, όπως εφαρμόζονται στο πλαίσιο των «ενεργητικών» πολιτικών απασχόλησης, πέραν του δεδηλωμένου στόχου της υποβοήθησης των ανέργων κατά την αναζήτηση θέσης εργασίας, επιτελούν και μια λανθάνουσα λειτουργία: προωθούν και εμπεδώνουν μια νέα «ηθική» απέναντι στην εργασία, που έχει ως κεντρικά της συστατικά τα αιτήματα για ευελιξία, κινητικότητα, ενεργοποίηση και προσαρμοστικότητα στις απαιτήσεις της αγοράς εργασίας. Η έρευνα επισημαίνει τους κινδύνους που ενυπάρχουν σε μια τέτοια, περιοριστική, αντίληψη περί συμβουλευτικής· κίνδυνοι που έγκεινται μεταξύ άλλων στη μετατροπή της συμβουλευτικής σε μηχανισμό άτυπου ελέγχου, ηθικού στιγματισμού και πειθάρχησης των ανέργων.
DOI: 10.6084/m9.figshare.14502318.v1
title: Microbial functional gene community datasets

description: Operational taxonomic unit (OtuTab) and amino acid variant (AAV) tables of six microbial functional genes.<br>
DOI: 10.6084/m9.figshare.14502306.v1
title: Microbial functional gene DNA sequence centroids

description: Representative centroid sequences for 97% operational taxonomic units of microbial functional genes.<br>
DOI: 10.6084/m9.figshare.14497989
title: River environmetal metadata and qPCR data

description: Environmental metadata for river samples and qPCR data. Variables are described below:sample - matches the sample code found in the filenames for amplicon sequence data files.geol - The underlying geology of each river site. One of either chalk, greensand, or clay.<br>site - The site code of each river.<br>replicate - The replicate code for each sample<br>bfi - The base flow index of each river sampled.<br>month - The sampling month within the year 2013.(gen16S, aoa, aob, nirs, nirk, mcra, hzo) - qPCR quantified abundances of the following microbial functional genes, respectively, bacterial 16S rRNA, archaeal amoA, bacterial amoA, nirS, nirK, mcrA, and hzo.<br>
DOI: 10.6084/m9.figshare.14497989.v1
title: River environmetal metadata and qPCR data

description: Environmental metadata for river samples and qPCR data. Variables are described below:sample - matches the sample code found in the filenames for amplicon sequence data files.geol - The underlying geology of each river site. One of either chalk, greensand, or clay.<br>site - The site code of each river.<br>replicate - The replicate code for each sample<br>bfi - The base flow index of each river sampled.<br>month - The sampling month within the year 2013.(gen16S, aoa, aob, nirs, nirk, mcra, hzo) - qPCR quantified abundances of the following microbial functional genes, respectively, bacterial 16S rRNA, archaeal amoA, bacterial amoA, nirS, nirK, mcrA, and hzo.<br>
DOI: 10.6084/m9.figshare.14502300.v1
title: Microbial functional gene amino acid sequences

description: Unique amino acid sequences of river sediment microbial communities for archaeal and bacterial amoA, hzo, nirS, mcrA, and pmoA genes.<br>
DOI: 10.5517/ccdc.csd.cc26qw0v
title: CCDC 2047767: Experimental Crystal Structure Determination

description: Related Article: Patrick Herr, Christoph Kerzig, Christopher B. Larsen, Daniel Häussinger, Oliver S. Wenger|2021|Nature Chemistry|13|956|doi:10.1038/s41557-021-00744-9
DOI: 10.5517/ccdc.csd.cc27t137
title: CCDC 2079638: Experimental Crystal Structure Determination

description: Related Article: Behrouz Nayebzadeh, Kamran Amiri, Hormoz Khosravi, Saber Mirzaei, Frank Rominger, Dmitry Dar’in, Mikhail Krasavin, Hamid Reza Bijanzadeh, Saeed Balalaie|2021|J.Org.Chem.|86|13693|doi:10.1021/acs.joc.1c01789
DOI: 10.5517/ccdc.csd.cc28534q
title: CCDC 2090272: Experimental Crystal Structure Determination

description: Related Article: Anton V. Rozhkov, Eugene A. Katlenok, Margarita V. Zhmykhova, Alexander Yu. Ivanov, Maxim L. Kuznetsov, Nadezhda A. Bokach, Vadim Yu. Kukushkin|2021|J.Am.Chem.Soc.|143|15701|doi:10.1021/jacs.1c06498
DOI: 10.5517/ccdc.csd.cc28535r
title: CCDC 2090273: Experimental Crystal Structure Determination

description: Related Article: Anton V. Rozhkov, Eugene A. Katlenok, Margarita V. Zhmykhova, Alexander Yu. Ivanov, Maxim L. Kuznetsov, Nadezhda A. Bokach, Vadim Yu. Kukushkin|2021|J.Am.Chem.Soc.|143|15701|doi:10.1021/jacs.1c06498
DOI: 10.5517/ccdc.csd.cc28kqh2
title: CCDC 2102404: Experimental Crystal Structure Determination

description: Related Article: Qi Yin, Xiaolu Wen, Yiwei Chen, Xiangnan Gong, Lin Hu|2021|Org.Lett.|23|7529|doi:10.1021/acs.orglett.1c02744
DOI: 10.18739/a24b2x58w
title: Arctic Subpolar gyre sTate Estimate, Release 1 (ASTE_R1) nctile daily 2002 - 2017

description: Output of the Arctic Subpolar gyre sTate Estimate, Release 1 (Nguyen et al., JAMES, 2021). The product was achieved through adjoint-based nonlinear least-squares optimization, whereby the misfit of the model to an extensive (O(10^9)) set of satellite and in situ observations was iteratively minimized. The primary product consists of monthly means of state variables, as well as monthly mean and snapshot fields required for accurate budget calculations. The ASTE_R1 product is structured as follows: 1. Time varying fields as monthly averages (nctiles_monthly) and monthly snapshots (nctiles_monthly_snapshots), doi:10.18739/A2CV4BS5IK 2. Depth-integrated time varying fields as monthly averages (nctiles_monthly_integrated) and monthly snapshots (nctiles_monthly_snapshots_integrated), doi:10.18739/A2833N015 3. Selected time varying state variables as daily averages (nctiles_daily), doi:10.18739/A24B2X58W 4. 12-month climatological averages (nctiles_climatology), doi:10.18739/A20P0WR8J 5. Vertical profiles of in-situ measurements and model-equivalent (profiles), doi:10.18739/A2VX0643Z 6. ASTE_R1 grid files (nctiles_grid), documentation (user guide, domain layout), and MATLAB toolbox to help analyze the output fields, doi:10.18739/A2MC8RH3V 7. Compile-time and run-time parameter files necessary to reproduce ASTE_R1 with the MITgcm (rerun_ASTE_R1), doi:10.18739/A2R49G98G This dataset (3) contains selected time varying 2D and 3D fields as daily averages (nctiles_daily). Each subdirectory inside these folders contains NetCDF files for each model variable, as indicated by the name of the subdirectory. Inside each variable folder, there are 29 files covering the 29 tiles that comprise the entire ASTE geographical domain. The tile number, ranging from 0001 to 0029, is accessible from the file name (e.g., inside SALT/ there are SALT.0001.nc to SALT.0029.nc). Each file contains all 5844 records of daily output, spanning Jan/2002-Dec/2017.
DOI: 10.6084/m9.figshare.14502318
title: Microbial functional gene community datasets

description: Operational taxonomic unit (OtuTab) and amino acid variant (AAV) tables of six microbial functional genes.<br>
DOI: 10.6084/m9.figshare.14502306
title: Microbial functional gene DNA sequence centroids

description: Representative centroid sequences for 97% operational taxonomic units of microbial functional genes.<br>
DOI: 10.6084/m9.figshare.14502300
title: Microbial functional gene amino acid sequences

description: Unique amino acid sequences of river sediment microbial communities for archaeal and bacterial amoA, hzo, nirS, mcrA, and pmoA genes.<br>
DOI: 10.5281/zenodo.5545963
title: Energetic electron precipitation induced by oblique whistler mode chorus emissions

description: This dataset includes the simulation results of Green's function and convolution integrals for a paper submitted to JGR-Space Physics.
DOI: 10.5281/zenodo.4773987
title: Energetic electron precipitation induced by oblique whistler mode chorus emissions

description: This dataset includes the simulation results of Green's function and convolution integrals for a paper submitted to JGR-Space Physics.
DOI: 10.6084/m9.figshare.16726405
title: SNP dataset

description: SNP dataset used to analyze Aedes aeypti populations from 3 areas within Buenos Aires city that presented variable levels of urbanization and land use.
DOI: 10.18112/openneuro.ds003604.v1.0.3
title: A longitudinal neuroimaging dataset on language processing in children ages 5, 7, and 9 years old
DOI: 10.5281/zenodo.5545926
title: Nudging healthcare professionals to improve treatment of COVID-19: a narrative review

description: The dataset is a complete description of all included and excluded studies in a narrative review synthesizing the available literature 2010-2020 on how nudging techniques can be used to affect the behavior of HCPs in clinical settings in order to see if these can be useful in the prevention and treatment of COVID-19.
DOI: 10.5281/zenodo.5545925
title: Nudging healthcare professionals to improve treatment of COVID-19: a narrative review

description: The dataset is a complete description of all included and excluded studies in a narrative review synthesizing the available literature 2010-2020 on how nudging techniques can be used to affect the behavior of HCPs in clinical settings in order to see if these can be useful in the prevention and treatment of COVID-19.
DOI: 10.5281/zenodo.5545886
title: A Spatiotemporal Dataset of Irrigated Agricultural Areas Across the Coastal Plain Region of South Carolina; USA

description: A Spatiotemporal Dataset of Irrigated Agricultural Areas Across the Coastal Plain Region of South Carolina; USA
DOI: 10.5281/zenodo.5545866
title: A Spatiotemporal Dataset of Irrigated Agricultural Areas Across the Coastal Plain Region of South Carolina; USA

description: A Spatiotemporal Dataset of Irrigated Agricultural Areas Across the Coastal Plain Region of South Carolina; USA
DOI: 10.5281/zenodo.5543892
title: jl7719/Resource-Constrained-Object-Detection: ball dataset v1.0

description: Ball Dataset of approx. 500 images of 5 different classes (red, green, blue, pink, yellow) of 3 different light settings (bright, normal, dark).
DOI: 10.18112/openneuro.ds003768.v1.0.2
title: Simultaneous EEG and fMRI signals during sleep from humans
DOI: 10.25919/kncv-p398
title: Parkes observations for project P456 semester 2021APRS_11

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. The PPTA is the oldest of three international pulsar timing groups. We have the smallest telescope and the smallest group, but the best measurements and the best results. Our bound on the strength of the incoherent gravitational wave background is the only bound which significantly constrains theoretical models. We have maintained our leading position because: we have the southern sky; we have a small but well-focussed group; we have the best-calibrated receivers; and we have been able to observe with an almost regular cadence of 15 to 20 days over a wide bandwidth. With this proposal we aim to maintain our pre-eminent position in the field. Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.6084/m9.figshare.16726453
title: Study 2

description: Dafa on 138 countries<br>
DOI: 10.6084/m9.figshare.16726453.v1
title: Study 2

description: Dafa on 138 countries<br>
DOI: 10.6084/m9.figshare.16722982
title: Genome-wide transcriptome signatures of ant-farmed Squamellaria epiphytes reveal key functions in a unique symbiosis

description: <i>De novo</i> assembly of RNA-Seq data of <i>Squamellaria</i> <i>imberbis </i>domatia tissue,<i> </i>conducted using Trinity v2.8.5<br>
DOI: 10.25345/c5g276
title: MassIVE MSV000088184 - Sex related differences of early alterations of the myocardial proteome in a rat model of myocardial ischemia
title: Proteomic raw data of a cardiac functional and proteomic investigation of sex-related differences shortly after pharmacologic induction of myocardial ischemia with isoproterenol in a rat model.