cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14247965
title: Supplementary Material for: Community- and Hospital-Acquired Acute Kidney Injury in COVID-19: Different Phenotypes and Dismal Prognosis

description: <b><i>Introduction:</i></b> Acute kidney injury (AKI) is common in coronavirus disease 2019 (COVID-19). It is unknown if hospital-acquired AKI (HA-AKI) and community-acquired AKI (CA-AKI) convey a distinct prognosis. <b><i>Methods:</i></b> The study aim was to evaluate the incidence and risk factors associated with both CA-AKI and HA-AKI. Consecutive patients hospitalized at a reference center for COVID-19 were included in this prospective cohort study. <b><i>Results:</i></b> We registered 349 (30%) AKI episodes in 1,170 hospitalized patients, 224 (19%) corresponded to CA-AKI, and 125 (11%) to HA-AKI. Compared to patients with HA-AKI, subjects with CA-AKI were older (61 years [IQR 49–70] vs. 50 years [IQR 43–61]), had more comorbidities (hypertension [44 vs. 26%], CKD [10 vs. 3%]), higher Charlson Comorbidity Index (2 points [IQR 1–4] vs. 1 point [IQR 0–2]), and presented to the emergency department with more severe disease. Mortality rates were not different between CA-AKI and HA-AKI (119 [53%] vs. 63 [50%], <i>p</i> = 0.66). In multivariate analysis, CA-AKI was strongly associated to a history of CKD (OR 4.17, 95% CI 1.53–11.3), hypertension (OR 1.55, 95% CI 1.01–2.36), Charlson Comorbidity Index (OR 1.16, 95% CI 1.02–1.32), and SOFA score (OR 2.19, 95% CI 1.87–2.57). HA-AKI was associated with the requirement for mechanical ventilation (OR 68.2, 95% CI 37.1–126), elevated troponin I (OR 1.95, 95% CI 1.01–3.83), and glucose levels at admission (OR 1.05, 95% CI 1.02–1.08). <b><i>Discussion/Conclusions:</i></b> CA-AKI and HA-AKI portend an adverse prognosis in CO­VID-19. Nevertheless, CA-AKI was associated with a higher comorbidity burden (including CKD and hypertension), while HA-AKI occurred in younger patients by the time severe multiorgan disease developed.
DOI: 10.5258/soton/d1776
title: Data set in support of AT-CuAAC synthesis of mechanically interlocked oligonucleotides

description: Dataset supports: Acevedo-Jake, A., Ball, A. T., Galli, M., Kukwikila, N. M., Denis, M. AS., Singleton, D., Tavassoli, A., & Goldup, S. (2020). AT-CuAAC synthesis of mechanically interlocked oligonucleotides. Journal of the American Chemical Society, 142(13), 5985-5990. https://doi.org/10.1021/jacs.0c01670
DOI: 10.5281/zenodo.4621047
title: Dataset of the paper "Lower gene expression of Angiotensin Converting Enzyme 2 Receptor in Lung Tissues of Smoker With COVID-19 pneumonia" (Lunardi F, et al. 2021)

description: The complete dataset and R code used for the analysis of the manuscript "<em>Lower gene expression of Angiotensin Converting Enzyme 2 Receptor in Lung Tissues of Smoker With COVID-19 pneumonia</em>" Dataset 9.03.2021 used for the analysis Dataset 15.03.2021 only for figure 1
DOI: 10.5281/zenodo.4621046
title: Dataset of the paper "Lower gene expression of Angiotensin Converting Enzyme 2 Receptor in Lung Tissues of Smoker With COVID-19 pneumonia" (Lunardi F, et al. 2021)

description: The complete dataset and R code used for the analysis of the manuscript "<em>Lower gene expression of Angiotensin Converting Enzyme 2 Receptor in Lung Tissues of Smoker With COVID-19 pneumonia</em>" Dataset 9.03.2021 used for the analysis Dataset 15.03.2021 only for figure 1
DOI: 10.5281/zenodo.4621070
title: Vertical temperature profiles obtained from Venus Express and Akatsuki radio occultation data using FSI

description: Vertical temperature profiles of Venusian atmosphere obtained from selected radio occultation data taken in ESA's Venus Express and JAXA's Akatsuki missions. The temperatures were retrieved using a radio holographic method, Full Spectrum Inversion (FSI). The data list and format are given in two Excel files and the data are given in text files with an extension ".dat".
DOI: 10.5281/zenodo.4621069
title: Vertical temperature profiles obtained from Venus Express and Akatsuki radio occultation data using FSI

description: Vertical temperature profiles of Venusian atmosphere obtained from selected radio occultation data taken in ESA's Venus Express and JAXA's Akatsuki missions. The temperatures were retrieved using a radio holographic method, Full Spectrum Inversion (FSI). The data list and format are given in two Excel files and the data are given in text files with an extension ".dat".
DOI: 10.5258/soton/d1678
title: TERMITES-MAZE python module

description: Code supporting Doctoral Thesis "Flying Doughnuts: Space-Time non-Separable Electromagnetic Pulses" Awarded University of Southampton 2021. A python implementation of the TERMITES-MAZE method for the spatio-temporal characterization of ultrashort cylindrical vector electromagnetic pulses. The first part implements the TERMITES algorithm for the characterization of linearly polarized pulses with uniform spectral properties at their center. The second part implements the analysis steps required to characterize cylindrical vector pulses. An example with simulated data is included in the example.py file.
DOI: 10.17030/uclan.data.00000274
title: The Susceptibility of Compound Remote Associate Problems to Disruption by Irrelevant Sound: A Window onto the Component Processes Underpinning Creative Cognition?
DOI: 10.5258/soton/d1223
title: Dataset to support Synthesis of a Mechanically Planar Chiral Rotaxane Ligand for Enantioselective Catalysis

description: Raw characterisation data for compounds reported in: Heard, A. W., & Goldup, S. (2020). Synthesis of a mechanically planar chiral rotaxane ligand for enantioselective catalysis. Chem, 6(4), 994-1006. https://doi.org/10.1016/j.chempr.2020.02.006
DOI: 10.5258/soton/d0828
title: Characterisation data for An Auxiliary Approach for the Stereoselective Synthesis of Topologically Chiral Catenanes

description: NMR, CD, HPLC, MS data for novel compounds reported in: Goldup, S. M., Denis, M., Modicom, F., & Lewis, J. E. M. (2019). An auxiliary approach for the stereoselective synthesis of topologically chiral catenanes. Chem, 5(6), 1512-1520. https://doi.org/10.1016/j.chempr.2019.03.008
DOI: 10.5281/zenodo.4621040
title: Project MONAI 2020 Bootcamp Challenge Dataset

description: Context This data is for the day 3 challenge of the MONAI bootcamp 2020. Given a network to classify images as being normal chest xrays or subjects with pneumonia, develop a new classifier with MONAI to classify as normal (0), pneumonia (1), or a Covid-19 patient (2). Sources Data was acquired from the following sources: https://www.kaggle.com/prashant268/chest-xray-covid19-pneumonia https://data.mendeley.com/datasets/fvk7h5dg2p/3 https://www.kaggle.com/bachrr/covid-chest-xray https://www.kaggle.com/nih-chest-xrays/data https://www.kaggle.com/tawsifurrahman/covid19-radiography-database
DOI: 10.5281/zenodo.4607277
title: Data set regarding snow algal modeling

description: This is a data set for using the snow algae model (Onuma et al., 2018; 2020). The content is as below. - data: observed algal cell concentration on the surface snow worldwide (csv files). model input and output data (csv files). output data simulated with Bio-MATSIRO (netCDF files). - python: programs for visualization (python scripts) - figure: png files created by the python scripts
DOI: 10.5517/ccdc.csd.cc26tnqf
title: CCDC 2050455: Experimental Crystal Structure Determination

description: Related Article: Alexander N. Erickson, Jacqueline Gianino, Sean J. Markovitz, Seth N. Brown|2021|Inorg.Chem.|60|4004|doi:10.1021/acs.inorgchem.1c00068
DOI: 10.5517/ccdc.csd.cc26tnrg
title: CCDC 2050456: Experimental Crystal Structure Determination

description: Related Article: Alexander N. Erickson, Jacqueline Gianino, Sean J. Markovitz, Seth N. Brown|2021|Inorg.Chem.|60|4004|doi:10.1021/acs.inorgchem.1c00068
DOI: 10.5517/ccdc.csd.cc271vdk
title: CCDC 2057358: Experimental Crystal Structure Determination

description: Related Article: Han Xie, Tyler J. Finnegan, Vageesha W. Liyana Gunawardana, Radoslav Z. Pavlović, Curtis E. Moore, Jovica D. Badjić|2021|J.Am.Chem.Soc.|143|3874|doi:10.1021/jacs.0c12329
DOI: 10.5517/ccdc.csd.cc271vfl
title: CCDC 2057359: Experimental Crystal Structure Determination

description: Related Article: Han Xie, Tyler J. Finnegan, Vageesha W. Liyana Gunawardana, Radoslav Z. Pavlović, Curtis E. Moore, Jovica D. Badjić|2021|J.Am.Chem.Soc.|143|3874|doi:10.1021/jacs.0c12329
DOI: 10.5517/ccdc.csd.cc271vgm
title: CCDC 2057360: Experimental Crystal Structure Determination

description: Related Article: Han Xie, Tyler J. Finnegan, Vageesha W. Liyana Gunawardana, Radoslav Z. Pavlović, Curtis E. Moore, Jovica D. Badjić|2021|J.Am.Chem.Soc.|143|3874|doi:10.1021/jacs.0c12329
DOI: 10.5517/ccdc.csd.cc2742yf
title: CCDC 2059514: Experimental Crystal Structure Determination

description: Related Article: Sunil Kumar Kandappa, Lakshmy Kannadi Valloli, Steffen Jockusch, Jayaraman Sivaguru|2021|J.Am.Chem.Soc.|143|3677|doi:10.1021/jacs.0c12099
DOI: 10.6084/m9.figshare.14247569
title: Additional file 1 of Prebiotic properties of Bacillus coagulans MA-13: production of galactoside hydrolyzing enzymes and characterization of the transglycosylation properties of a GH42 β-galactosidase

description: Additional file 1: Table S1. Intra- and extra- cellular proteins active on ONP-b-gal, PNP-b-gal and PNP-a-gal as revealed by gel zymography, were identified through LC-MS/MS method (XLSX 275 KB)
DOI: 10.3886/e113559v1-81700
title: Replication data for: Does the Media Matter? A Field Experiment Measuring the Effect of Newspapers on Voting Behavior and Political Opinions

description: We conducted a field experiment to measure the effect of exposure to newspapers on political behavior and opinion. Before the 2005 Virginia gubernatorial election, we randomly assigned individuals to a Washington Post free subscription treatment, a Washington Times free subscription treatment, or a control treatment. We find no effect of either paper on political knowledge, stated opinions, or turnout in post-election survey and voter data. However, receiving either paper led to more support for the Democratic candidate, suggesting that media slant mattered less in this case than media exposure. Some evidence from voting records also suggests that receiving either paper led to increased 2006 voter turnout. (JEL D72, L82)
DOI: 10.6084/m9.figshare.14248075
title: Code and dataset from Species-area and network-area relationships in host–helminth interactions

description: The scaling relationship observed between species richness and the geographical area sampled (i.e. the species-area relationship (SAR)) is a widely recognized macroecological relationship. Recently, this theory has been extended to trophic interactions, suggesting that geographical area may influence the structure of species interaction networks (i.e. network-area relationships (NARs)). Here, we use a global dataset of host–helminth parasite interactions to test existing predictions from macroecological theory. Scaling between single locations to the global host–helminth network by sequentially adding networks together, we find support that geographical area influences species richness and the number of species interactions in host–helminth networks. However, species-area slopes were larger for host species relative to their helminth parasites, counter to theoretical predictions. Lastly, host–helminth network modularity—capturing the tendency of the network to form into separate subcommunities—decreased with increasing area, also counter to theoretical predictions. Reconciling this disconnect between existing theory and observed SAR and NAR will provide insight into the spatial structuring of ecological networks, and help to refine theory to highlight the effects of network type, species distributional overlap, and the specificity of trophic interactions on NARs.
DOI: 10.6084/m9.figshare.14248075.v1
title: Code and dataset from Species-area and network-area relationships in host–helminth interactions

description: The scaling relationship observed between species richness and the geographical area sampled (i.e. the species-area relationship (SAR)) is a widely recognized macroecological relationship. Recently, this theory has been extended to trophic interactions, suggesting that geographical area may influence the structure of species interaction networks (i.e. network-area relationships (NARs)). Here, we use a global dataset of host–helminth parasite interactions to test existing predictions from macroecological theory. Scaling between single locations to the global host–helminth network by sequentially adding networks together, we find support that geographical area influences species richness and the number of species interactions in host–helminth networks. However, species-area slopes were larger for host species relative to their helminth parasites, counter to theoretical predictions. Lastly, host–helminth network modularity—capturing the tendency of the network to form into separate subcommunities—decreased with increasing area, also counter to theoretical predictions. Reconciling this disconnect between existing theory and observed SAR and NAR will provide insight into the spatial structuring of ecological networks, and help to refine theory to highlight the effects of network type, species distributional overlap, and the specificity of trophic interactions on NARs.
DOI: 10.5281/zenodo.4621120
title: Data set regarding snow algal modeling

description: This is a data set for using the snow algae model (Onuma et al., 2018; 2020). The content is as below. - data: observed algal cell concentration on the surface snow worldwide (csv files). model input and output data (csv files). output data simulated with Bio-MATSIRO (netCDF files). - python: programs for visualization (python scripts) - figure: png files created by the python scripts
DOI: 10.6084/m9.figshare.14247980
title: Serial section series of Bathymodiolus puteoserpentis pediveliger (1555-31)

description: Serial section series of a non symbiotic Bathymodiolus puteoserpentis pediveliger. The mussel was sampled at the Semenov-2 vent field (13.513 N; 44.962 W) at 2446.5 m water depth in 2016. The mussel was fixed with 2.5% glutaraldehyde stored in PHEM-buffer. Sections (1.5 µm section thickness) were stained with toluidine blue.
DOI: 10.6084/m9.figshare.14247980.v1
title: Serial section series of Bathymodiolus puteoserpentis pediveliger (1555-31)

description: Serial section series of a non symbiotic Bathymodiolus puteoserpentis pediveliger. The mussel was sampled at the Semenov-2 vent field (13.513 N; 44.962 W) at 2446.5 m water depth in 2016. The mussel was fixed with 2.5% glutaraldehyde stored in PHEM-buffer. Sections (1.5 µm section thickness) were stained with toluidine blue.
DOI: 10.25838/d5p-18
title: Supporting Information for "Molecular modeling and simulations of DNA and RNA: DNAzyme as a model system"

description: Nowadays, the structural dynamics of DNA and RNA is accessible on an atomistic level on a micro- to millisecond time scale via molecular dynamics simulations. However, as DNA or RNA are highly charged molecules, performing such simulations is challenging as to the representation of intramolecular electrostatic interactions and those to solvent molecules and ions. This is particularly true for DNAzymes, where DNA and RNA backbones can come as close as 2.4 Å with their charged phosphate groups during the catalytic cycle. Here, we present tools to simulate the structural dynamics of a DNAzyme, with a focus on detailed instructions for the Amber suite of programs. Furthermore, we will show how to analyze metal ion binding within the DNAzyme.
DOI: 10.6084/m9.figshare.14248046
title: Serial section series of Bathymodiolus puteoserpentis plantigrade (1555-42)

description: Serial section series of a non symbiotic Bathymodiolus puteoserpentis plantigrade. The mussel was sampled at the Semenov-2 vent field (13.513 N; 44.962 W) at 2446.5 m water depth in 2016. The mussel was fixed with 2.5% glutaraldehyde stored in PHEM-buffer. Sections (1.5 µm section thickness) were stained with toluidine blue.
DOI: 10.6084/m9.figshare.14248046.v1
title: Serial section series of Bathymodiolus puteoserpentis plantigrade (1555-42)

description: Serial section series of a non symbiotic Bathymodiolus puteoserpentis plantigrade. The mussel was sampled at the Semenov-2 vent field (13.513 N; 44.962 W) at 2446.5 m water depth in 2016. The mussel was fixed with 2.5% glutaraldehyde stored in PHEM-buffer. Sections (1.5 µm section thickness) were stained with toluidine blue.
DOI: 10.5281/zenodo.4619891
title: Electrolyser CAPEX and efficiency data for: Potential and risks of hydrogen-based e-fuels in climate change mitigation

description: Material compiled for analysis in this paper: Ueckerdt F, Bauer C, Dirnaichner A, Everall J, Sacchi R, Luderer R (2021) Potential and risks of hydrogen-based e-fuels in climate change mitigation. Nature Climate Change. The material includes:<br> 1) a spreadsheet file with technoeconomic data<br> 2) an R Markdown script which is the source code for an interactive dashboard used to visualise (1)<br> 3) a README file to assist with navigation of the data in (1) 1) The spreadsheet data contains CAPEX, efficiency and other supplementary data for small to large scale electrolysers for current, and future years. Data was collected based on a Literature Review of a variety of academic and industry sources conducted during the course of the title paper development. The data are differentiated by several categories including electrolysis method, source publication year and literature type. Care was taken to avoid recycled cost values, and to focus on the currency of the data, with values included to indicate the oldest reference year of any cited literature. 2) The R Markdown script in combination with the spreadsheet data is used as a basis for an interactive dashboard which can be run with an R installation and the supporting packages, or viewed online at https://h2.pik-potsdam.de/H2Dash/
DOI: 10.6084/m9.figshare.14247470
title: Extended data for SARS-CoV-2 and the role of orofecal transmission: a systematic review.

description: Extended data for: SARS-CoV-2 and the role of orofecal transmission: a systematic review.<br>
DOI: 10.6084/m9.figshare.14247470.v1
title: Extended data for SARS-CoV-2 and the role of orofecal transmission: a systematic review.

description: Extended data for: SARS-CoV-2 and the role of orofecal transmission: a systematic review.<br>
DOI: 10.6084/m9.figshare.14248055
title: SARS-CoV-2 and the Role of Airborne Transmission: Systematic review

description: The data is for F1000 review. <b>SARS-CoV-2 and the Role of </b><b>Airborne Transmission: Systematic review </b>Heneghan C; Spencer EA; Brassey J Plüddemann A ; Onakpoya, Evans D<sup>; </sup>Conly JM; Jefferson T.<br>The data incudes updated protocol, search strategies, characteristics of included primary studies and systematic reviews, reporting quality, main results and references to included studies for systematic review examining the role of fomites in SARS-CoV-2 transmission. A PRISMA Checklist is also included.<b> </b>
DOI: 10.6084/m9.figshare.14248055.v1
title: SARS-CoV-2 and the Role of Airborne Transmission: Systematic review

description: The data is for F1000 review published on F1000. <b>SARS-CoV-2 and the Role of </b><b>Airborne Transmission: Systematic review </b>Heneghan C; Spencer EA; Brassey J Plüddemann A ; Onakpoya, Evans D<sup>; </sup>Conly JM; Jefferson T.<br><b> </b>
DOI: 10.6084/m9.figshare.10006682
title: Brainstem connectome

description: This data and software can be used to analyse the complete bilateral weighted and directed brain stem connectome of the laboratory rat.<br>
DOI: 10.6084/m9.figshare.10006682.v6
title: Brainstem connectome

description: This data and software can be used to analyse the complete bilateral weighted and directed brain stem connectome of the laboratory rat.<br>
DOI: 10.21227/54c6-tg98
title: Forecast for January 21

description: Forecast for January 21
DOI: 10.6084/m9.figshare.14248067
title: Going underground: short- and long-term movements may reveal the fossorial spatial ecology of an amphisbaenian Item

description: Long and short term movements of the amphisbaeniana Trogonophis wiegmanni<br>
DOI: 10.6084/m9.figshare.14248067.v1
title: Going underground: short- and long-term movements may reveal the fossorial spatial ecology of an amphisbaenian Item

description: Long and short term movements of the amphisbaeniana Trogonophis wiegmanni<br>
DOI: 10.5281/zenodo.4058759
title: sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset

description: sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset, as described in the publication<em> Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome</em> by Garrido-Martín et al. in Nat. Commun. (https://doi.org/10.1038/s41467-020-20578-2). It contains the results of the sqtlseeker2-nf pipeline, run using different input data: i) RSEM transcript quantifications and genotype data from GTEx V7, ii) LeafCutter intron excision ratios and genotype data from GTEx V7 and iii) RSEM transcript quantifications and genotype data from GTEx V8. For each GTEx tissue, it includes summary statistics corresponding to all the tests performed (both nominal and permutation passes) and the significant sQTLs identified.
DOI: 10.5281/zenodo.4058758
title: sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset

description: sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset, as described in the publication<em> Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome</em> by Garrido-Martín et al. in Nat. Commun. (https://doi.org/10.1038/s41467-020-20578-2). It contains the results of the sqtlseeker2-nf pipeline, run using different input data: i) RSEM transcript quantifications and genotype data from GTEx V7, ii) LeafCutter intron excision ratios and genotype data from GTEx V7 and iii) RSEM transcript quantifications and genotype data from GTEx V8. For each GTEx tissue, it includes summary statistics corresponding to all the tests performed (both nominal and permutation passes) and the significant sQTLs identified.
DOI: 10.6084/m9.figshare.14247431.v1
title: Supplementary material for the article, "Measles Outbreak Investigation Process in Low- and Middle-Income Countries: A Systematic Review of the Methods and Costs of Contact Tracing"

description: Online Resource 1: PRISMA ChecklistThis word document is a completed PRISMA checklist that outlines how the implementation of this systematic review conforms with the stipulated guidelines.<br>Online Resource 2: Article Selection SummaryThis excel workbook provides a summary of the article selection process showing how the inclusion and exclusion criteria were applied when reviewing the title, abstract and full-text of articles obtained from each database search. Also, the number of duplicates and articles resulting from hand searches have been included<br>Online Resource 3: Study Selection Process for each DatabaseSearch results exported from each of the six databases are presented from Table 1 to Table 6 (each table on a separate excel sheet of the workbook). The date on which these searches were done together with reviewers’ decisions have been incorporated.<br>Online Resource 4: Quality Assessment of Included Studies Grouped by Type of Design.Details of how each quality assessment tool was applied to each study have been provided in Tables 1 to 4 (on four separate excel sheets of a workbook), each table containing studies of the same design.<br>Online Resource 5: Risk of Bias AssessmentThis excel workbook contains the assessment of bias (selection, information and confounding) across the studies included for this review.
DOI: 10.6084/m9.figshare.13318442
title: S1: Active volcanoes in Marie Byrd Land

description: Detailed locations, descriptions and geochemistry of Mount Waesche englacial tephra layers, along with selected other samples, and description of Mount Waesche field campaigns.