cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yxgk3k
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema ramosissimum Reinecke"
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188279-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pks2c2
title: Occurrence Download

description: A dataset containing 1924 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-125 33,-115 33,-115 49,-125 49,-125 33))",
 "TaxonKey is Monotropa uniflora L."
 ]
}

 The dataset includes 1924 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040033-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjxagx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Sepia apama)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188292-230224095556074/datasets/export for details.
DOI: 10.15468/dl.2v4saq
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pentacalia perijaensis (Cuatrec.) Cuatrec.",
 "Country is Colombia"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000125-150912100344238/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myhsan
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Procris rectangulare (H.J.P.Winkl.) R.J.Johns"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188290-230224095556074/datasets/export for details.
DOI: 10.15468/dl.qrnnsc
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Pteris livida Mett.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 186 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032147-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnvvnk
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum maglia Schltdl.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000125-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxahg3
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema recticaudatum W.T.Wang"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188295-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uftuzt
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinella nesiotes (Duellman & Toft, 1979)"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010336-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x37jec
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Zimbabwe",
 "Year is 1934",
 "Month is September"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000125-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8943mm
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema tenuicornutum W.T.Wang"
 ]
}

 The dataset includes 40 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188646-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zu5x47
title: Occurrence Download

description: A dataset containing 58240 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontites vernus (Bellardi) Dumort."
 ]
}

 The dataset includes 58240 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021947-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.20267652
title: Additional file 5 of Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates the severity of DSS colitis

description: Additional file 5: Supplementary Table S8. Differentially abundant viral scaffolds between VLP treatment groups. UC VLPs vs. PBS control, phage gavage period (tab 1). Healthy VLPs vs. PBS control (tab 2). Related to Fig. 5.
DOI: 10.6084/m9.figshare.24990323
title: Identifiability and Consistent Estimation for Gaussian Chain Graph Models

description: The chain graph model admits both undirected and directed edges in one graph, where symmetric conditional dependencies are encoded via undirected edges and asymmetric causal relations are encoded via directed edges. Though frequently encountered in practice, the chain graph model has been largely under investigated in the literature, possibly due to the lack of identifiability conditions between undirected and directed edges. In this article, we first establish a set of novel identifiability conditions for the Gaussian chain graph model, exploiting a low rank plus sparse decomposition of the precision matrix. Further, an efficient learning algorithm is built upon the identifiability conditions to fully recover the chain graph structure. Theoretical analysis on the proposed method is conducted, assuring its asymptotic consistency in recovering the exact chain graph structure. The advantage of the proposed method is also supported by numerical experiments on both simulated examples and a real application on the Standard & Poor 500 index data. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.24990323.v1
title: Identifiability and Consistent Estimation for Gaussian Chain Graph Models

description: The chain graph model admits both undirected and directed edges in one graph, where symmetric conditional dependencies are encoded via undirected edges and asymmetric causal relations are encoded via directed edges. Though frequently encountered in practice, the chain graph model has been largely under investigated in the literature, possibly due to the lack of identifiability conditions between undirected and directed edges. In this article, we first establish a set of novel identifiability conditions for the Gaussian chain graph model, exploiting a low rank plus sparse decomposition of the precision matrix. Further, an efficient learning algorithm is built upon the identifiability conditions to fully recover the chain graph structure. Theoretical analysis on the proposed method is conducted, assuring its asymptotic consistency in recovering the exact chain graph structure. The advantage of the proposed method is also supported by numerical experiments on both simulated examples and a real application on the Standard & Poor 500 index data. Supplementary materials for this article are available online.
DOI: 10.5519/qd.ychhsej7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (281 records)
DOI: 10.6084/m9.figshare.7164578
title: Additional file 1: of Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases

description: Table S1. Samples of the 55 animal species used in this study and the provinces and dates of collection. Table S2. The reads of virus under each family. Table S3. The reads of mammailan virus under each family. Table S4. Origin and accession number of viruses identified in this study. Table S5. Amino acid identity of rodents Arenavirus and representatives of other species. Table S6. The aa identities (%) of the predicted ORF1a and ORF1b between Rodent Arteriviruses and other known members of the family Arteriviridae (including a tentative member, WPDV). Table S7. The aa identities (%) between these hepaciviruses and other known rodent hepacivirus. Table S8. Amino acid identity (%)of rodents Hepatitis E and representatives of other Genotypes. Table S9. The aa identities (%) between these BtCoVs and other known members of the lineage-A beta-CoVs. Table S10. The aa identities (%) between these BtCoVs and other known members of alpha-CoVs. Table S11. Amino acid identity of rodents picornaviruses and representatives of other genera in P1, P2, and P3 regions. Table S12. Pairwise amino acid identities (%) of predicted gene products of RtAp-ParaV/NX2015 compared to other Jeilongvirus members. Table S13. Amino acid identity of rodents parvovirus and representatives of other genera. (XLSX 149 kb)
DOI: 10.6084/m9.figshare.7164596
title: Additional file 2: of Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases

description: Table S14. The reads of each viral family related to province and animal species. (XLSX 159 kb)
DOI: 10.6084/m9.figshare.12403451
title: Health-related quality of life and symptom burden of epithelioid hemangioendothelioma patients: a global patient-driven Facebook study in a very rare malignancy

description: <b>Purpose:</b> Epithelioid hemangioendothelioma (EHE) is an ultra-rare vascular sarcoma with unique clinical features. EHE is characterized by an unpredictable, often protracted, clinical course and highly variable clinical presentation. Due to difficulty recruiting ultra-rare cancer patients, health-related quality of life (HRQoL) of EHE patients has not yet been studied. The aim of this study was to assess EHE symptom burden and its impact on HRQoL and psychological distress. <b>Methods:</b> The study was initiated after EHE patients’ foundations approached our research group to study HRQoL. Patients were recruited from the international EHE Facebook group from May through October 2018. Data were collected using the online PROFILES registry. Latent class cluster analysis was performed to identify groups based on frequently reported symptoms. Differences in HRQoL (EORTC-QLQ-C30) and psychological distress (Hospital Anxiety and Depression Scale) between symptom-based clusters were examined. <b>Results:</b> Among 115 EHE patients from 20 countries, three clusters were identified, with low-, intermediate- and high-symptom burden, respectively. Highly symptomatic patients (33%) had clinically relevantly lower scores on HRQoL compared to the other two groups (<i>p</i> &lt; 0.001). These patients suffered mostly from pain, insomnia and fatigue. Symptom burden significantly correlated with reduced daily functioning and high levels of psychological distress. Only for highly symptomatic patients, HRQoL and symptom levels were worse compared to healthy individuals. <b>Conclusion:</b> For the first time, we studied HRQoL in a large international cohort of ultra-rare cancer patients with distinct clinical characteristics, enabled by collaboration with patients and use of social media. We showed a considerable number of EHE patients were highly symptomatic, with a significant impact on HRQoL and psychological distress.
DOI: 10.6084/m9.figshare.12403451.v1
title: Health-related quality of life and symptom burden of epithelioid hemangioendothelioma patients: a global patient-driven Facebook study in a very rare malignancy

description: <b>Purpose:</b> Epithelioid hemangioendothelioma (EHE) is an ultra-rare vascular sarcoma with unique clinical features. EHE is characterized by an unpredictable, often protracted, clinical course and highly variable clinical presentation. Due to difficulty recruiting ultra-rare cancer patients, health-related quality of life (HRQoL) of EHE patients has not yet been studied. The aim of this study was to assess EHE symptom burden and its impact on HRQoL and psychological distress. <b>Methods:</b> The study was initiated after EHE patients’ foundations approached our research group to study HRQoL. Patients were recruited from the international EHE Facebook group from May through October 2018. Data were collected using the online PROFILES registry. Latent class cluster analysis was performed to identify groups based on frequently reported symptoms. Differences in HRQoL (EORTC-QLQ-C30) and psychological distress (Hospital Anxiety and Depression Scale) between symptom-based clusters were examined. <b>Results:</b> Among 115 EHE patients from 20 countries, three clusters were identified, with low-, intermediate- and high-symptom burden, respectively. Highly symptomatic patients (33%) had clinically relevantly lower scores on HRQoL compared to the other two groups (<i>p</i> &lt; 0.001). These patients suffered mostly from pain, insomnia and fatigue. Symptom burden significantly correlated with reduced daily functioning and high levels of psychological distress. Only for highly symptomatic patients, HRQoL and symptom levels were worse compared to healthy individuals. <b>Conclusion:</b> For the first time, we studied HRQoL in a large international cohort of ultra-rare cancer patients with distinct clinical characteristics, enabled by collaboration with patients and use of social media. We showed a considerable number of EHE patients were highly symptomatic, with a significant impact on HRQoL and psychological distress.
DOI: 10.6084/m9.figshare.19219416
title: Additional file 2 of Application of a next-generation sequencing (NGS) panel in newborn screening efficiently identifies inborn disorders of neonates

description: Additional file 2: Table S2.
DOI: 10.6084/m9.figshare.14498744.v1
title: Additional file 16 of Transcriptome dynamic landscape underlying the improvement of maize lodging resistance under coronatine treatment

description: Additional file 16: Data Sets 6. Information of DEGs in stem-specific expression genes.
DOI: 10.6084/m9.figshare.20267804.v1
title: Additional file 1 of scSTEM: clustering pseudotime ordered single-cell data

description: Additional file 1. Gene cluster sizes, profile sizes, and p-values for each combination of trajectory inference method and gene summarization metric; Number of NK cell markers for the clusters presented in Fig. 5.
DOI: 10.6084/m9.figshare.14498747
title: Additional file 17 of Transcriptome dynamic landscape underlying the improvement of maize lodging resistance under coronatine treatment

description: Additional file 17: Data Sets 7. Information of DEGs in the GA and JA pathway.
DOI: 10.6084/m9.figshare.25244785
title: Input tiff file

description: These datasets are being used in our project for flood susceptibility mapping and prediction.
DOI: 10.6084/m9.figshare.25244785.v1
title: Input tiff file

description: These datasets are being used in our project for flood susceptibility mapping and prediction.
DOI: 10.6084/m9.figshare.19747621
title: Assessment of physiological and electrochemical effects of a repurposed Zinc dithiocarbamate complex on Acinetobacter baumannii biofilms

description:   
<em>Acinetobacter baumannii </em>is an infectious agent of global proportion and concern, partly due to its proficiency in development of antibiotic resistance phenotypes and biofilm formation. Dithiocarbamates (DTC) have been identified as possible alternatives to the current antimicrobials. We report here the evaluation of several DTC-metal complexes against <em>A. baumannii</em> planktonic cells and biofilms. Among the DTC-metal complexes and DTCs tested, ZnL1 (N-methyl-1-phenyldithiocarbamato-S,S’ Zn(II)), originally designed as an antitumor agent, is effective against biofilm forming <em>A. baumannii.</em> A MIC value of 12.5 µM, comparable to that of Gentamicin (5 µM) was measured for planktonic cells in tryptic soy broth. Spectroscopy, microscopy and biochemical analyses reveal cell membrane degradation and leakage after treatment with ZnL1. Bioelectrochemical analysis show that ZnL1 reduces biofilm formation and decreases extracellular respiration of pre-formed biofilms, as corroborated by microscopic analyses.  Due to the affinity of Zn to cells and the metal chelating nature of L1 ligand, we hypothesize ZnL1 could alter metalloprotein functions in the membranes of <em>A. baumannii</em> cells, leading to altered redox balance and cell. Results indicate that DTC-Zn metal complex are effective antimicrobial agents against early <em>A. baumannii biofilms</em> under laboratory conditions.
DOI: 10.6084/m9.figshare.10310471
title: Transcriptomic analysis of berry development and a corresponding analysis of anthocyanin biosynthesis in teinturier grape

description: Teinturier cultivars of grape (<i>Vitis vinifera</i>) accumulate anthocyanins in both the skin and pulp of grape berries. RNA-seq and HPLC/MS were used to elucidate the mechanism of anthocyanin biosynthesis in whole grape berries of a new source of teinturier germplasm, ZhongShan-HongYu (ZS-HY). Berries were sampled at 3 days after anthesis (3 DAA, green-pulp), 6 days after anthesis (6 DAA, pulp-veraison), 22 days after anthesis (22 DAA, pulp-half-colored), and at maturity (77 DAA). Results indicated that total anthocyanin levels increased with berry development. The relative content of anthocyanins was different in the pulp vs. skin. Besides, Pelargonidin-3-<i>O</i>-monoglucoside, which unable to be produced in most varieties of <i>Vitis vinifera</i>, was detected in ZS-HY. RNA-seq analysis result that a total of 56 candidate genes, including 30 structural and 26 regulatory genes, were identified that putatively participate in biosynthesis pathway of anthocyanins in ZS-HY. A KEGG analysis indicated that photosynthesis – antenna proteins and photosynthesis, which is significantly enriched in response to light, is proposed to be responsible for the regulation of anthocyanin production in teinturier grapes by light. The present study provides the first transcriptomic analysis of teinturier grapes and provides a foundation for further studies that will assist in the breeding of high-quality teinturier grapes.
DOI: 10.6084/m9.figshare.10310471.v1
title: Transcriptomic analysis of berry development and a corresponding analysis of anthocyanin biosynthesis in teinturier grape

description: Teinturier cultivars of grape (<i>Vitis vinifera</i>) accumulate anthocyanins in both the skin and pulp of grape berries. RNA-seq and HPLC/MS were used to elucidate the mechanism of anthocyanin biosynthesis in whole grape berries of a new source of teinturier germplasm, ZhongShan-HongYu (ZS-HY). Berries were sampled at 3 days after anthesis (3 DAA, green-pulp), 6 days after anthesis (6 DAA, pulp-veraison), 22 days after anthesis (22 DAA, pulp-half-colored), and at maturity (77 DAA). Results indicated that total anthocyanin levels increased with berry development. The relative content of anthocyanins was different in the pulp vs. skin. Besides, Pelargonidin-3-<i>O</i>-monoglucoside, which unable to be produced in most varieties of <i>Vitis vinifera</i>, was detected in ZS-HY. RNA-seq analysis result that a total of 56 candidate genes, including 30 structural and 26 regulatory genes, were identified that putatively participate in biosynthesis pathway of anthocyanins in ZS-HY. A KEGG analysis indicated that photosynthesis – antenna proteins and photosynthesis, which is significantly enriched in response to light, is proposed to be responsible for the regulation of anthocyanin production in teinturier grapes by light. The present study provides the first transcriptomic analysis of teinturier grapes and provides a foundation for further studies that will assist in the breeding of high-quality teinturier grapes.
DOI: 10.6084/m9.figshare.17126276
title: Gastrodin attenuates perfluorooctanoic acid-induced liver injury by regulating gut microbiota composition in mice

description: Perfluorooctanoic acid (PFOA) can accumulate in the livers of humans and animals via the food chain, resulting into liver injury, which is closely related to intestinal flora dysbiosis. Gastrodin has been reported to have hepatoprotective effect. However, whether gastrodin can alleviate PFOA-induced liver injury via modulating gut microbiota remains unclear. Herein, a PFOA-induced liver injury model was established by gavage of PFOA (5 mg/kg body weight) in 2% Tween 80 solution once daily for 6 weeks in mice, and then gastrodin in saline (20 mg/kg body weight) was used once daily for 8 weeks to treat liver damage. The biochemical indexes associated with liver function, oxidative stress, and inflammatory factors were examined. Hematoxylin-eosin staining was used to determine the liver histopathological changes. Besides, 16S rRNA sequencing was used to analyze the difference of gut microbiota between the model and treatment groups. The results showed that gastrodin significantly improved the oxidative stress caused by PFOA. Intestinal flora analysis showed that gastrodin treatment significantly increased the relative abundance of probiotics, such as <i>Lactobacillus, Bifidobacterium,</i> and <i>Bacteroides</i>, while the harmful bacteria, including <i>Desulfovibrio</i> were decreased. Gastrodin treatment also significantly increased the level of short-chain fatty acids (SCFAs), such as butyric acid and isobutyric acid. Spearman correlation analysis showed that the composition changes of gut microbiota and SCFAs increase were both beneficial to alleviate the liver injury caused by PFOA. To sum up, gastrodin can effectively alleviate PFOA-induced liver injury through regulating gut microbiota composition.