cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1090232.10fu
title: SH1090232.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1090236.10fu
title: SH1090236.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1090244.10fu
title: SH1090244.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1090251.10fu
title: SH1090251.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.4e6bz4
title: Occurrence Download

description: A dataset containing 1475 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (MEX.15_1, MEX.20_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Testudines"
 ]
}

 The dataset includes 1475 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002485-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aeumaf
title: Occurrence Download

description: A dataset containing 458330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus Latreille, 1802"
 ]
}

 The dataset includes 458330 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0349351-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tocuo
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geositta cunicularia georgei Koepcke, 1965"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019374-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3z42an
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Dioscorea zingiberensis C.H.Wright"
 ]
}

 The dataset includes 376 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074481-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsbe67
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-47.57021 38.06497,19.57021 38.06497,19.57021 64.93503,-47.57021 64.93503,-47.57021 38.06497))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gaidropsarus macrophthalmus (Günther, 1867)"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011236-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11222318
title: SEM/EBSD/EDX Data JFL

description: SEM, EBSD and SEM-EDX data on the RPV base metal steel JFL for the ENTENTE Database
DOI: 10.5281/zenodo.11222319
title: SEM/EBSD/EDX Data JFL

description: SEM, EBSD and SEM-EDX data on the RPV base metal steel JFL for the ENTENTE Database
DOI: 10.15468/dl.9mpgqe
title: Occurrence Download

description: A dataset containing 556 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalus tigris Kennicott, 1859"
 ]
}

 The dataset includes 556 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002778-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hgvgk
title: Occurrence Download

description: A dataset containing 1587 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ptiloprora guisei (De Vis, 1894)"
 ]
}

 The dataset includes 1587 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001976-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aw9g29
title: Occurrence Download

description: A dataset containing 56528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is Norwegian Species Observation Service",
 "GadmGid is NOR",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84"
 ]
 },
 "OccurrenceStatus is Present",
 "PublishingOrg is d3978a37-635a-4ae3-bb85-7b4d41bc0b88",
 "TaxonKey is Apiales",
 "Year 1970-2021"
 ]
}

 The dataset includes 56528 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0347981-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22a2bv
title: Occurrence Download

description: A dataset containing 434 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thaumastocoris peregrinus D.L.Carpintero & Dellapé, 2006"
 ]
}

 The dataset includes 434 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022352-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnh2fr
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Micromus timidus Hagen, 1853)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 113 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043352-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mms84
title: Occurrence Download

description: A dataset containing 471535 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lythrum salicaria L."
 ]
}

 The dataset includes 471535 records from 883 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112240-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgmkak
title: Occurrence Download

description: A dataset containing 35791 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Helicoverpa armigera (Hübner, 1808)"
 ]
}

 The dataset includes 35791 records from 311 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014315-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24414/rob-euref-ceut00esp
title: GNSS data of CEUT00ESP, Ceuta, Spain

description: Permanent GNSS station dataset as daily RINEX files
DOI: 10.15468/dl.t9ntk8
title: Occurrence Download

description: A dataset containing 748517 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-3.598 36.80182,-2.5551 36.80182,-2.5551 37.18473,-3.598 37.18473,-3.598 36.80182))"
 ]
}

 The dataset includes 748517 records from 229 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119957-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yc8rp3
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((58.83625 5.07529,171.18823 5.07529,171.18823 50.07529,58.83625 50.07529,58.83625 5.07529))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Senna tora (L.) Roxb.",
 "Year 1970-2025"
 ]
}

 The dataset includes 130 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012417-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14671222
title: Ten Technical Replicates of a Standard Mix Measured with HPLC-HRMS (Orbitrap)

description: This dataset contains ten technical replicates (repeat injections) of standard compunds, including the expected retention time. Measurements were taken with reverse-phase chromatography on a QExactive orbitrap mass spectrometer. The mass spectra are provided in profile mode as .raw (thermo) file.

We provide this data since all ten measurements are highly similar, which can serve as a reference for studies concerned with the stability of a sample. It has been highly useful during the development of the qAlgorithms project (https://github.com/odea-project/qAlgorithms), and might help other developers of non-target processing software.

The following standard substances were measured in aqueous solution: 




Compound
Expected RT (min)
m/z


Hydroxycotinine
2,43
193,0960


Hydroxycotinine-d3
2,45
196,1157


Anatabine
4,24
161,1071


Cotinine
5,39
177,102


Cotinine-d3
5,38
180,1207


Anabasine
5,61
163,1227


Anabasine-d4
5,61
167,1478


Vanillylmandelic acid
6,14
197,0434


Homovanillic acid
7,67
181,0484


Atrazine desisopropyl
7,77
174,0539


Bisphenol A
11,69
227,1061


Bisphenol A-d16
11,55
241,1938


3-phenoxybenzoic acid
13,55
213,0537




For more details regarding the column and method, please refer to this publication: https://doi.org/10.1016/j.scitotenv.2025.178767
DOI: 10.5281/zenodo.14671223
title: Ten Technical Replicates of a Standard Mix Measured with HPLC-HRMS (Orbitrap)

description: This dataset contains ten technical replicates (repeat injections) of standard compunds, including the expected retention time. Measurements were taken with reverse-phase chromatography on a QExactive orbitrap mass spectrometer. The mass spectra are provided in profile mode as .raw (thermo) file.

We provide this data since all ten measurements are highly similar, which can serve as a reference for studies concerned with the stability of a sample. It has been highly useful during the development of the qAlgorithms project (https://github.com/odea-project/qAlgorithms), and might help other developers of non-target processing software.

The following standard substances were measured in aqueous solution: 




Compound
Expected RT (min)
m/z


Hydroxycotinine
2,43
193,0960


Hydroxycotinine-d3
2,45
196,1157


Anatabine
4,24
161,1071


Cotinine
5,39
177,102


Cotinine-d3
5,38
180,1207


Anabasine
5,61
163,1227


Anabasine-d4
5,61
167,1478


Vanillylmandelic acid
6,14
197,0434


Homovanillic acid
7,67
181,0484


Atrazine desisopropyl
7,77
174,0539


Bisphenol A
11,69
227,1061


Bisphenol A-d16
11,55
241,1938


3-phenoxybenzoic acid
13,55
213,0537




For more details regarding the column and method, please refer to this publication: https://doi.org/10.1016/j.scitotenv.2025.178767
DOI: 10.5281/zenodo.14872945
title: CIRHIS: Cellular Human immune Responses during controlled Human malaria Infection Studies (GHDC-SI-ID-53)- WB PROT1 PhosphoCyTOF

description: The goal of this project is to investigate whether we can use host-directed therapy (ruxolitinib) in conjunction with the anti-malarial drug artemether-lumefantrine to enhance immune responses in malaria-naïve individuals participating in a controlled human malaria infection model with P. falciparum-induced blood-stage malaria.

With support from the Gates Foundation’s Collaboratory, we have generated Phospho CyTOF/mass cytometry data on WB PROT1 samples collected from study participants.

 

The samples were stained in batches of plates.  All the Stims for a given timepoint for a given study donor were stained together on the same plate as a Barcoded pool (CellID 20plex Standard Biotools).  A healthy donor Unstim and IFNa+LPS+IL7 triple stim QC control was stained at the same time as each plate, but was barcoded and pooled as a separate Pool.  The samples were normalized in the Standard Biotools EQ4 Passport method using Helios software, followed by debarcoding using the Helios software.  The Debarcoded files are Ungated (still contain Beads, doublets, debris, etc).  No live-dead was included in the staining, as the samples were initially fresh complete WB.
DOI: 10.5281/zenodo.14872946
title: CIRHIS: Cellular Human immune Responses during controlled Human malaria Infection Studies (GHDC-SI-ID-53)- WB PROT1 PhosphoCyTOF

description: The goal of this project is to investigate whether we can use host-directed therapy (ruxolitinib) in conjunction with the anti-malarial drug artemether-lumefantrine to enhance immune responses in malaria-naïve individuals participating in a controlled human malaria infection model with P. falciparum-induced blood-stage malaria.

With support from the Gates Foundation’s Collaboratory, we have generated Phospho CyTOF/mass cytometry data on WB PROT1 samples collected from study participants.

 

The samples were stained in batches of plates.  All the Stims for a given timepoint for a given study donor were stained together on the same plate as a Barcoded pool (CellID 20plex Standard Biotools).  A healthy donor Unstim and IFNa+LPS+IL7 triple stim QC control was stained at the same time as each plate, but was barcoded and pooled as a separate Pool.  The samples were normalized in the Standard Biotools EQ4 Passport method using Helios software, followed by debarcoding using the Helios software.  The Debarcoded files are Ungated (still contain Beads, doublets, debris, etc).  No live-dead was included in the staining, as the samples were initially fresh complete WB.
DOI: 10.25549/dijon-ouc112756241
title: 5.11 north-south section F-F1

description: Trench 5
DOI: 10.15468/dl.3bon7z
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Curvella Chaper, 1885",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((109.51 5.13,109.51 22.11,137.07 22.11,137.07 5.13,109.51 5.13))"
 ]
}

 The dataset includes 31 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000379-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/dijon-ouc112756133
title: 3.56-3.57 east-west section stratigraphy above A3

description: 3.57 east-west section stratigraphy above A3
DOI: 10.15468/dl.g60npi
title: Occurrence Download

description: A dataset containing 1817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tyto alba (Scopoli, 1769)",
 "Geometry POLYGON((-97.43 -17.65,-97.43 16.89,-42.32 16.89,-42.32 -17.65,-97.43 -17.65))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1817 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000379-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/dijon-ouc112756132
title: 3.56-3.57 east-west section stratigraphy above A3

description: 3.57 east-west section stratigraphy above A3
DOI: 10.25549/dijon-ouc112756127
title: 4.01 plan

description: 4.01 plan
DOI: 10.15468/dl.njdxaj
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agave victoriae-reginae T.Moore"
 ]
}

 The dataset includes 133 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000379-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/dijon-ouc112756225
title: 3.39-3.40 east-west section J3

description: 3.39 east-west section J3 and rubble
DOI: 10.25549/dijon-ouc112756213
title: Part 1 plan used for levels

description: Trench 4
DOI: 10.15468/dl.alqouj
title: Occurrence Download

description: A dataset containing 38514 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Colombia",
 "Country is Ecuador",
 "Country is Panama",
 "Country is Costa Rica"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Pristimantis Jiménez de la Espada, 1870",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38514 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000379-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/dijon-ouc112755942
title: Part 1 plan used for levels

description: Trench 4
DOI: 10.15468/dl.tkvtbb
title: Occurrence Download

description: A dataset containing 342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conandron ramondioides Siebold & Zucc.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 342 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000379-170816103707345/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/dijon-ouc112756109
title: 3.83 north-south section above S1

description: 3.83 north-south section above S1
DOI: 10.25549/dijon-ouc113136395
title: 1. Trench 1: Courtyard above north arm of the crypt
DOI: 10.15468/dl.i0bm9j
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Medicago citrina (Font Quer) Greuter"
 ]
}

 The dataset includes 333 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000379-170821155850132/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/dijon-ouc113136396
title: 1. Trench 1: Courtyard above north arm of the crypt
DOI: 10.15468/dl.bpccjm
title: Occurrence Download

description: A dataset containing 5600 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saccopteryx bilineata (Temminck, 1838)"
 ]
}

 The dataset includes 5600 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000379-170925132151566/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/dijon-ouc113136397
title: 1. Trench 1: Courtyard above north arm of the crypt
DOI: 10.25549/dijon-ouc113136398
title: 1. Trench 1: Courtyard above north arm of the crypt