cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5816122
title: Diel vertical migration promotes prokaryotic diversity in the Red Sea mesopelagic

description: ABSTRACT: The diel vertical migration (DVM) of fish provides an active transport of labile dissolved organic matter (DOM) to the deep ocean, fueling the metabolism of heterotrophic bacteria and archaea. We studied the impact of DVM on the mesopelagic prokaryotic diversity of the Red Sea focusing on the mesopelagic deep scattering layer (DSL) between 450-600 m. Despite the general consensus of homogeneous conditions in the twilight zone, we observed variability in physico-chemical variables and distinct seasonal indicator prokaryotes inhabiting the DSL, representing between 2% (summer) to over 10% (winter) of total sequences. The DSL samples diverged from the surrounding mesopelagic waters in multidimensional scaling analysis and were distributed according to depth (47% of variance explained). We identified the sources of diversity that contribute to the DSL using spring depth profiles. On average, 7% was related to probable sinking from the epipelagic, 34% was common among the other mesopelagic waters and 38% was attributable to the DVM, with 21% of species being unique to the DSL. We conclude that the mesopelagic physico-chemical properties shape a rather uniform prokaryotic community, but that the 200 m wide DSL contributes uniquely and in a high proportion to the diversity of the Red Sea mesopelagic. The raw 16S sequences used in this research article are available at https://www.ebi.ac.uk/ena/browser/view/PRJEB49545 as 67 paired fastq sequences with consecutive accession numbers: ERX7411972 – ERX7412038. The 2 files stored in this repository represent: a) the clean 16S sequences count and taxonomic affiliation (SILVA132 Database) and b) the metadata associated to each of the 67 samples (lat, long, temperature, salinity, nutrient concentrations, bacterial abundance, bacterial size, etc)
DOI: 10.6084/m9.figshare.16575212
title: Deep to shallow sulfide saturation at Nisyros active volcano

description: This dataset includes the following:<br><b>Table 1</b>. Sample description<br><b>Table 2</b>. Whole rock XRF and LA-ICP-MS major and trace element chemistry of Nisyros volcano, Greece<b>Table 3</b>. Sulfide abundance in enclaves, cumulates and host lavas of Nisyros based on image analysis (ImageJ© 1.38 software).<b>Table 4</b>. In situ EPMA sulfide chemical analysis for major and minor elements.
DOI: 10.5281/zenodo.5816140
title: Ara militaris decontaminated gx

description: .
DOI: 10.5281/zenodo.5816139
title: Ara militaris decontaminated gx

description: .
DOI: 10.48324/dandi.000206/0.220103.2119
title: Visual cortical activity in mice performing naturalistic virtual foraging task

description: Large FOV two-photon calcium imaging dataset recorded from V1 L2/3 neurons from mouse performing a naturalistic foraging task in virtual reality.
DOI: 10.6084/m9.figshare.13847612
title: Supporting Data for "Conspiracy of Corporate Networks in Corruption Scandals", Frontiers in Physics, 6, 2021

description: This repository contains the data used in the article "Conspiracy of Corporate Networks in Corruption Scandals", Frontiers in Physics, 6, 2021. https://www.frontiersin.org/articles/10.3389/fphy.2021.667471/full<br><br>For privacy protection, we have held in anonymity all the information regarding identification of the companies and associated people.<br><br>There is one csv file for each of the four cases analyzed in the article. The number in the file names correspond to the case number as it appears in the article text. <br>The "casex_edgelist.csv" files contain the following information:<br>- source: Company identifier.- target: Personnel identifier.- edge_type: SH, ADM, COM, LR.- shell: True or False whether the company is identified as shell or not.- creation_date: Date of company creation in YYYY-MM-DD format when available, otherwise NaT.<br><br>
DOI: 10.6084/m9.figshare.13847612.v1
title: Supporting Data for "Conspiracy of Corporate Networks in Corruption Scandals"

description: This repository contains the data used in the article "Conspiracy of Corporate Networks in Corruption Scandals".<br><br>For privacy protection, we have held in anonymity all the information regarding identification of the companies and associated people.<br><br>There is one csv file for each of the four cases analyzed in the article. The number in the file names correspond to the case number as it appears in the article text. <br>The "casex_edgelist.csv" files contain the following information:<br>- source: Company identifier.- target: Personnel identifier.- edge_type: SH, ADM, COM, LR.- shell: True or False whether the company is identified as shell or not.- creation_date: Date of company creation in YYYY-MM-DD format when available, otherwise NaT.<br><br>
DOI: 10.6084/m9.figshare.17714840
title: Stim Onsets

description: Stimulus onsets in *.1D format used in AFNI scripts.Each file contains onsets (in sec) for 4 experimental runs (each rows)
DOI: 10.6084/m9.figshare.3761562.v2093
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.17714840.v1
title: Stim Onsets

description: Stimulus onsets in *.1D format used in AFNI scripts.Each file contains onsets (in sec) for 4 experimental runs (each rows)
DOI: 10.3886/e158641
title: White Racial Awareness: Complexities & Contexts of White Educator Identities

description: This study utilized life history methodology to understand the process of racial identity development in white educators. Data included transcripts from interviews with seven, white-identifying participants. This data was collected by the PI as part of broader dissertation research during the 2020-2021 academic year. <br><br>
DOI: 10.3886/e158641v1
title: White Racial Awareness: Complexities & Contexts of White Educator Identities

description: This study utilized life history methodology to understand the process of racial identity development in white educators. Data included transcripts from interviews with seven, white-identifying participants. This data was collected by the PI as part of broader dissertation research during the 2020-2021 academic year. <br><br>
DOI: 10.6084/m9.figshare.14879934
title: Data and R script: Viruses associated with ill health in wild chimpanzees

description: Data and R code for the article entitled, "Viruses associated with ill health in wild chimpanzees", published in the <i>American Journal of Primatology</i>.<br>
DOI: 10.6084/m9.figshare.14879934.v1
title: Data and R script: Viruses associated with ill health in wild chimpanzees

description: Data and R code for the article entitled, "Viruses associated with ill health in wild chimpanzees", published in the <i>American Journal of Primatology</i>.<br>
DOI: 10.3886/e123803v1
title: Replication Data: The Effects of a Trade Shock on Gender-Specific Labor Market Outcomes in Brazil

description: <pre>As countries around the world increasingly engage in international trade, labor markets respond, creating both winners and losers. In this paper, I analyze the impact of a trade shock on gender-specific local labor market outcomes in Brazil. I use an instrumental variable approach and population census data for Brazil to estimate the effect of both increased imports from China and increased exports to China on male and female local labor market outcomes from 2000 to 2010. Regions more exposed to imports from China experience slower wage growth in the traded and formal sectors, but the declines are significantly larger for men, particularly in sectors with low shares of female employment. Exports have a positive association with wage growth, but no relationship with employment growth. Import-induced wage declines are coupled with significant employment growth in the formal sector. The gains for women are nearly double those for men, increasing the share of female employment in the formal sector. Regions more exposed to Chinese imports also experience an increase in the female employment to population ratio and a decrease in male and female unemployment rates. Thus, trade with China induces new workers into the labor market, reduces unemployment, and reallocates labor to the formal sector. These employment gains are strongest for women, signaling reduced employment barriers for females. Further, as employment reallocates to the formal sector, occupation segregation declines, highlighting an additional avenue through which trade can have gendered labor market effects.<br></pre>
DOI: 10.13026/ae9a-f727
title: BRAX, a Brazilian labeled chest X-ray dataset

description: The Brazilian labeled chest x-ray dataset (BRAX) is an automatically labeled
dataset designed to assist researchers in the validation of machine learning
models. The dataset contains 24,959 chest radiography studies from patients
presenting to a large general Brazilian hospital. A total of 40,967 images are
available in the BRAX dataset. All images have been verified by trained
radiologists and de-identified to protect patient privacy. Fourteen labels
were derived from free-text radiology reports written in Brazilian Portuguese
using Natural Language Processing.
DOI: 10.5281/zenodo.5815721
title: The Water-ice Feature in Near-infrared Disk-scattered Light around HD 142527: Micron-sized Icy Grains Lifted up to the Disk Surface?

description: This is a reproduction package for the paper "The Water-ice Feature in Near-infrared Disk-scattered Light around HD 142527: Micron-sized Icy Grains Lifted up to the Disk Surface?" by Tazaki et al. (2021). In this repository, you will find the data files used to make figures in the paper. Source codes and scripts are included as well.
DOI: 10.5281/zenodo.5815720
title: The Water-ice Feature in Near-infrared Disk-scattered Light around HD 142527: Micron-sized Icy Grains Lifted up to the Disk Surface?

description: This is a reproduction package for the paper "The Water-ice Feature in Near-infrared Disk-scattered Light around HD 142527: Micron-sized Icy Grains Lifted up to the Disk Surface?" by Tazaki et al. (2021). In this repository, you will find the data files used to make figures in the paper. Source codes and scripts are included as well.
DOI: 10.6073/pasta/c0bd1ca5de343dc93c74395d21bf3fc6
title: Molecular composition of dissolved organic matter from Lake Mendota from June – November 2017, analyzed by Fourier-transform ion cyclotron resonance mass spectrometry

description: Dissolved organic matter (DOM) is a complex mixture of organic compounds found in all natural waters. Its composition affects its reactivity towards numerous processes. Its composition is a function of both its source (e.g., allochthonous or autochthonous) as well as the extent of environmental processing it has undergone (e.g., chemical or biological degradation). Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS) allows for the characterization of dissolved organic matter at the molecular level. The water sample was collected near the NTL-LTER research buoy on Lake Mendota. Formula assignments were made to raw mass to charge ratios detected in the mass spectrum using a custom processing script and resulting in a list of chemical formulas making up the DOM sample.
DOI: 10.6073/pasta/d668dcf76d98cf7f94dbb0ec2fd41a51
title: Ultraviolet-visible spectroscopy absorbances for dissolved organic matter from Lake Mendota from June – November 2017

description: Dissolved organic matter (DOM) is a complex mixture of organic compounds found in all natural waters. Its composition affects its reactivity towards numerous processes. Its composition is a function of both its source (e.g., allochthonous or autochthonous) as well as the extent of environmental processing it has undergone (e.g., chemical or biological degradation). Ultraviolet-visible (UV-vis) spectroscopy is an analytical technique commonly used to assess the composition of dissolved organic matter in water samples. Here, we present spectra from Lake Mendota samples collected from June - November in 2017 at the surface of Lake Mendota as well as at specific depths within the water column. All samples were collected near the NTL-LTER research buoy. Absorbance values are listed for wavelengths 200 - 800 nm for each sample.
DOI: 10.6073/pasta/6c5885f8f1423b274a3fea6c20e25c66
title: Winterberry: Fruit retention in fall and winter in 2016-2019 for four shrub species across Alaska

description: This dataset contains observations of fruit retention and state for Rosa acicularis (prickly rose), Empetrum nigrum (crowberry or blackberry), Vaccinium vitis-idaea (lowbush cranberry or lingonberry) and Viburnum edule (highbush cranberry). Data were collected at 47 sites in 25 communities in 6 ecoregions across Alaska, primarily by youth groups. Ecoregions include Bering taiga, Bering tundra, intermontane boreal, Alaska range transition, Aleutian meadows, and coastal rainforest. Observations were made approximately weekly during snow-free periods in fall and (at some sites) spring. At most sites only one species was monitored but some sites include observations on two species. Data consist of counts of unripe, ripe, rotten, dry, and damaged fruits. The dataset consists of one spreadsheet for each species and a file describing the location and habitat of each site.
DOI: 10.6073/pasta/d4764b05a9aa95f7cfc5514dfcacc6a3
title: Soil moisture and soil properties in Watershed 1 of the HJ Andrews Experimental Forest, 2016–2020

description: Soil water content was measured at 0–30 cm and 0–60 cm depth at 54 sites within a 10-ha north-facing forested slope of Watershed 1 on 14 dates from August 2016–October 2017. Soil properties were measured at 13 soil moisture sites during the summer of 2017. Soil properties include bulk density, percent sand, percent clay, percent silt, gravimetric rock content, volumetric water content at field capacity, volumetric water content at turgor loss point, and saturated hydraulic conductivity at 15 and 45 cm depth. Total soil depth and resistance to penetration were also measured at 38 sites using a dynamic cone penetrometer. Volumetric water content (VWC) and soil water potential were recorded every 30 min at 9 locations in Watershed 1. VWC sensors were installed at 5, 50, and 100 cm and soil water potential were installed at 50 cm at each location.
DOI: 10.6073/pasta/ef35067530a59188cd35a59b0d924ac6
title: Data from: Nutrient identity modifies the destabilizing effects of eutrophication in grasslands

description: Nutrient enrichment can simultaneously increase and destabilize plant biomass production, with co-limitation by multiple nutrients potentially intensifying these effects. Here, we test how factorial additions of nitrogen (N), phosphorus (P), and potassium with essential nutrients (K+) affect the stability (mean/standard deviation) of aboveground biomass in 34 grasslands over seven years. Destabilization with fertilization was prevalent but was driven by single nutrients, not synergistic nutrient interactions. On average, N-based treatments increased mean biomass production by 21-51% but increased its standard deviation by 40-68% and so consistently reduced stability. Adding P increased interannual variability and reduced stability without altering mean biomass, while K+ had no general effects. Declines in stability were largest in the most nutrient-limited grasslands, or where nutrients reduced species richness or intensified species synchrony. We show that nutrients can differentially impact the stability of biomass production, with N and P in particular disproportionately increasing its interannual variability.
DOI: 10.6073/pasta/5209a86c4d0491715625d31b4d2c5c16
title: Weekly CTD profile measurements of conductivity, specific conductance, temperature, depth, density, and salinity from Lake Hoare, McMurdo Dry Valleys, Antarctica during the 2012-2013 austral summer

description: As part of the McMurdo Dry Valleys Long Term Ecological Research (LTER) project, we investigated relationships between wind conditions and barotropic seiches within Lake Hoare, located in Taylor Valley, Antarctica, during the 2012-2013 austral summer. Temporal changes in the water column were measured using a rugged, handheld, CastAway CTD (conductivity-temperature-depth probe, manufactured by SonTek), deployed through the Lake Hoare Limno Hole (note, this is a separate instrument from the SeaBird CTD used as part of the MCM LTER core limnological monitoring program). The CastAway CTD directly measures temperature, electrical conductivity, and pressure at 5 Hz as it free-falls through the water column at a rate of approximately 1 m s-1 on the downward cast and approximately 0.3 m s-1 on the upward cast. The device calculates salinity and density using the International Equation of State for Seawater, called EOS-80. This data package provides 27 profiles of depth, temperature, conductivity, specific conductance, salinity, and density collected between November 25, 2012 and January 21, 2013. In general, three profiles were collected over a ten-minute-period every seven days for 57 days. Five profiles were collected prior to the arrival of spring melt, four profiles were collected during the arrival of spring melt on December 7, 2012, and 18 profiles were collected after the arrival of spring melt continuing into late summer.
DOI: 10.6073/pasta/83a9c811cf8c84844a21510b52fdd0e9
title: McMurdo Dry Valleys LTER: High frequency, 1-min pressure measurements of continuous stage (lake level) and ice surface ablation from Lake Hoare, Antarctica from 2012-2016

description: As part of the McMurdo Dry Valleys Long Term Ecological Research program, continuous stage (lake level) and ice surface ablation were collected at Lake Hoare, located in Taylor Valley, Antarctica. This package contains data measured at 1-minute intervals from Nov 2012 to Apr 2013, Nov 2013 to Feb 2014, and Nov 2014 to Oct 2016.
DOI: 10.6073/pasta/fcde3058c2d599572dc02e528f99db1e
title: McMurdo Dry Valleys CTD profiles in Lakes

description: As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, a series of Taylor Valley lakes have been monitored for conductivity, temperature and depth. A Seabird 25 CTD (conductivity, temperature, and depth) instrument was used to record temperature profiles in perennial ice covered lakes.
DOI: 10.6073/pasta/0f4e4aab180775bcd23c64108882fea0
title: McMurdo Dry Valleys Bathymetric Hypsographic Function Values

description: As part of the Long Term Ecological Research in the McMurdo Dry Valleys of Antarctica, bathymetric data was collected for Lakes Hoare, Fryxell and Bonney. This table contains the area, volume represented in a given layer, and volume represented below a given depth for various depths in these lakes.
DOI: 10.6073/pasta/1688bdf9c001c89972d2cb53d242c4ef
title: First-order vertebrated mortality due the 2020 wildfires in the Pantanal wetland, Brazil

description: We conducted ground surveys along line transects to estimate the first-order impact of the 2020 wildfires on vertebrates in the Pantanal wetlands, Brazil. We adopted the distance sampling technique (Burnham et al 1980) to estimate the densities and the number of dead vertebrates in the 39,030 square kilometers affected by fire. We covered 123 transects scattered in the floodplain, up to 72 hours after the fires, mostly within 24 or 48 hours. We recorded the perpendicular distance between each carcass found in the field and the line transect. The carcasses were identified at least at Order level, down to species level when possible. The surveys were conducted from August to November 2020.
DOI: 10.17632/8h9cfjkdpg.1
title: Clay minerals in the Cadiz contourite system over the last 25 kyrs 

description: 1- Clay mineral assemblages of samples from IODP sites U1386, U1389 and U1390. 

2- Clay mineral assemblages of samples from CADISAR cruise. 

3- Percentages of fine cohesive particles (<10 µm).
DOI: 10.17632/8h9cfjkdpg.2
title: Clay minerals in the Cadiz contourite system over the last 25 kyrs 

description: 1- Clay mineral assemblages of samples from IODP sites U1386, U1389 and U1390. 

2- Clay mineral assemblages of samples from CADISAR cruise. 

3- Percentages of fine cohesive particles (<10 µm).

4- Sortable silt (µm)
DOI: 10.17632/w5ws4pzzxr.1
title: The influence of angle alpha, angle kappa and optical aberra-tions on the visual outcomes after implantation of a high-addition trifocal IOL_2021

description: The aim of our investigation was to examine the possible correlations between optical aberrations, angle kappa, angle alpha and the visual outcomes following cataract surgery. 56 eyes of 28 patients were implanted with the Liberty 677MY trifocal intraocular lens (IOL). Pre- and postoperative higher order aberrations, coma, astigmatism, angle alpha and angle kappa were registered, along with uncorrected and corrected visual acuities at multiple distances. Visual acuity and contrast sensitivity defocus curves were plotted and the areas under curve were calculated 1 and 3 months postoperatively.
DOI: 10.17632/ptz6zhknyp.1
title: Reference COVID-19 clinical data for synthetic data generation with SASC

description: The reference COVID-19 dataset was obtained from the Clinical Practice Research Datalink (CPRD). This dataset is based on real anonymized primary care patient data extracted from the CPRD Aurum database (https://www.cprd.com/primary-care) . Patients were typically in primary care with symptoms of COVID-19 (confirmed/suspected) and control participants with a negative COVID-19 test result. For the purpose of this paper, we made use of the CRPD COVID-19 symptoms and risk factors synthetic dataset (Version 2021.04.001). The dataset contains information on sociodemographic and clinical risk factors from 03/12/2019 to 13/04/2021. The dataset is also publicly deposited on Zenodo at https://zenodo.org/record/5544057#.YVxl6ppBxaR.