cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8292617
title: Distribution patterns of meiofauna on a tropical macrotidal sandy beach, with special focus on nematodes (Caixa d’Água, Amazon Coast, Brazil)

description: Abstract Spatial distribution patterns (both horizontal and vertical) of meiofauna, with special focus on nematodes, on a tropical macrotidal beach across different climatic periods were analyzed in this study. Samplings were carried out at five stations in the intertidal zone in June (rainy season) and December (dry season), 2011. At each station, three samples were taken using a corer with 3cm diameter, which was thrust 10cm into the substrate and stratified in 0-2, 2-5, and 5-10cm. Meiofauna was comprised of 16 groups and Nematoda was the dominant. Meiofauna density during rainy season was higher at the central intertidal station and during dry season it was lower near the high tide mark, followed by an increasing trend towards the low tide mark. Meiofauna was more concentrated in the upper sediment layer during rainy season. However, during dry season, the highest density occurred in the lower sediment layer at both stations near the high tide mark. Nematoda association was comprised of 72 genera, with Daptonema and Theristus (both from the family Xyalidae) as the dominant ones in most stations and strata. The genera richness and diversity increased towards the low tide mark, with lower richness in the upper stratum at most stations. Non-selective deposit-feeders predominated during rainy season, while at dry season there was an alternation of dominance between non-selective deposit-feeders and epistrate feeders. Significant differences were found in the meiofauna community, as well as in the Nematoda association in regard to the months, stations, and sediment layers. The distribution patterns of interstitial organisms found in this study, in part, follow what is already known for microtidal beaches but other differential aspects were observed even if compared to environments of macrotidal beaches in temperate regions.
DOI: 10.6084/m9.figshare.8986943
title: Dredging impact on trace metal behavior in a polluted estuary: a discussion about sampling design

description: ABSTRACT Studies involving coastal sediment resuspension have shown that trace metals could be released to the water column due to changes in physical-chemical conditions. Therefore, if environmental agencies adopt screening protocols with insufficient evaluations of contaminant mobilization risks for a given area, the prediction of environmental impacts caused by dredging may be limited. This work evaluates the influence of spatial variation on the geochemical mobility of trace metals (Cd, Cu, Ni, Pb, Zn) after artificial sediment resuspension, using as study case the Iguaçu River estuary (Guanabara Bay, Brazil). The Iguaçu River drains the industrial complex of the metropolitan area of Rio de Janeiro State, besides the presence of agriculture and the input of untreated domestic wastes. Surface estuarine sediments were submitted to resuspension experiments in an open system, during 1h and 24h of agitation on local water. A clear tendency of metals’ solubilization was observed after resuspension, especially considering the dissolved concentrations of Cu (average: 8.0 µg L-1) and Zn (average: 0.9 mg L-1), especially for the samples from the transects 2 and 3. However, evaluations of water quality changes due to sediment resuspension are not requested by the legislation regulating the dredging activities. In the sediments, the results suggested a higher geochemical mobility of Cu, indicated by the massive increase on the bioavailable fraction after resuspension, mainly on the transect number 3, on the river’s mouth. The effects of resuspension were distinct between samples, suggesting that even in a small scale, important differences on metals’ mobility are found. Thus, the combined assessment of changes in metal concentrations in water and in the metal partitioning linked to the solid-phase was demonstrated to be a promising tool for predicting the environmental risks of dredging due to changes in the bioavailability of metals.
DOI: 10.6084/m9.figshare.8986943.v1
title: Dredging impact on trace metal behavior in a polluted estuary: a discussion about sampling design

description: ABSTRACT Studies involving coastal sediment resuspension have shown that trace metals could be released to the water column due to changes in physical-chemical conditions. Therefore, if environmental agencies adopt screening protocols with insufficient evaluations of contaminant mobilization risks for a given area, the prediction of environmental impacts caused by dredging may be limited. This work evaluates the influence of spatial variation on the geochemical mobility of trace metals (Cd, Cu, Ni, Pb, Zn) after artificial sediment resuspension, using as study case the Iguaçu River estuary (Guanabara Bay, Brazil). The Iguaçu River drains the industrial complex of the metropolitan area of Rio de Janeiro State, besides the presence of agriculture and the input of untreated domestic wastes. Surface estuarine sediments were submitted to resuspension experiments in an open system, during 1h and 24h of agitation on local water. A clear tendency of metals’ solubilization was observed after resuspension, especially considering the dissolved concentrations of Cu (average: 8.0 µg L-1) and Zn (average: 0.9 mg L-1), especially for the samples from the transects 2 and 3. However, evaluations of water quality changes due to sediment resuspension are not requested by the legislation regulating the dredging activities. In the sediments, the results suggested a higher geochemical mobility of Cu, indicated by the massive increase on the bioavailable fraction after resuspension, mainly on the transect number 3, on the river’s mouth. The effects of resuspension were distinct between samples, suggesting that even in a small scale, important differences on metals’ mobility are found. Thus, the combined assessment of changes in metal concentrations in water and in the metal partitioning linked to the solid-phase was demonstrated to be a promising tool for predicting the environmental risks of dredging due to changes in the bioavailability of metals.
DOI: 10.6084/m9.figshare.9956909
title: Salinity regulation of copepod egg production in a large microtidal estuary

description: ABSTRACT Salinity is a key variable for ecological processes in estuaries. Acartia tonsa is a typical estuarine copepod whose responses to salinity have been thoroughly studied in the laboratory. However, results cannot be extrapolated to the field, and formal comparisons between lab and field responses to salinity were not attempted. Here we compare lab-based with field copepod egg production rates (EPR) from the Río de la Plata estuary (RPE), with focus on A. tonsa. Field work was conducted between 2009 and 2011 in the mixing zone of the RPE. Water temperature, salinity and chlorophyll-a varied over ample ranges (temperature: 10.54 - 24.56ºC, salinity: 2.83 - 32.99, chlorophyll-a: 0.62 - 7.27 mg m-3). A. tonsa was the strongly dominant species. EPR ranged between 6.7 and 95.7 eggs female-1 day-1, and correlated to salinity, temperature (weakly), but not to chlorophyll. The relationship between A. tonsa’s EPR (EPRAT) and salinity was consistent with that obtained under laboratory conditions: a humped pattern with a maximum at intermediate salinities. However, differences were also evident, e.g., higher EPRAT was measured in the field. We speculate that discrepancies derive from nutritional differences between field and reference (laboratory) data sets. Besides salinity, food quality and quantity may be first order drivers of A. tonsa’s productivity in the RPE.
DOI: 10.6084/m9.figshare.9956909.v1
title: Salinity regulation of copepod egg production in a large microtidal estuary

description: ABSTRACT Salinity is a key variable for ecological processes in estuaries. Acartia tonsa is a typical estuarine copepod whose responses to salinity have been thoroughly studied in the laboratory. However, results cannot be extrapolated to the field, and formal comparisons between lab and field responses to salinity were not attempted. Here we compare lab-based with field copepod egg production rates (EPR) from the Río de la Plata estuary (RPE), with focus on A. tonsa. Field work was conducted between 2009 and 2011 in the mixing zone of the RPE. Water temperature, salinity and chlorophyll-a varied over ample ranges (temperature: 10.54 - 24.56ºC, salinity: 2.83 - 32.99, chlorophyll-a: 0.62 - 7.27 mg m-3). A. tonsa was the strongly dominant species. EPR ranged between 6.7 and 95.7 eggs female-1 day-1, and correlated to salinity, temperature (weakly), but not to chlorophyll. The relationship between A. tonsa’s EPR (EPRAT) and salinity was consistent with that obtained under laboratory conditions: a humped pattern with a maximum at intermediate salinities. However, differences were also evident, e.g., higher EPRAT was measured in the field. We speculate that discrepancies derive from nutritional differences between field and reference (laboratory) data sets. Besides salinity, food quality and quantity may be first order drivers of A. tonsa’s productivity in the RPE.
DOI: 10.6084/m9.figshare.8986946
title: Composition and distribution of Serranidae (Actinopterygii:Perciformes) larvae in the Southeastern Brazilian Bight

description: ABSTRACT This study describes the taxonomic composition and horizontal distribution of Serranidae larvae along the Southeastern Brazilian Bight (SBB, approximately 22°S and 28°S), and investigates how environmental and biological factors influence the larval distribution. Ichthyoplankton samples were collected in 10 oceanographic cruises conducted from 1975 to 1981. Serranidae larvae were identified into 15 species, including 11 genera and four subfamilies. Except for Diplectrum formosum, which was widely distributed throughout the SBB, Hyporthodus spp. and Baldwinella vivanus were distributed in the southern portion of the SBB, while other species were distributed mainly in the northern portion of the SBB, inside the 200 m isobath. Local depth, latitude, distance from the closest island and salinity were factors that influenced significantly on the distribution and abundance of the most abundant taxa D. formosum, Diplectrum spp., Serranus spp. and Mycteroperca spp. Significant progress was made in identifying grouper larvae from the SBB (Epinephelus morio, Epinephelus itajara and Hyporthodus nigritus).
DOI: 10.6084/m9.figshare.8986946.v1
title: Composition and distribution of Serranidae (Actinopterygii:Perciformes) larvae in the Southeastern Brazilian Bight

description: ABSTRACT This study describes the taxonomic composition and horizontal distribution of Serranidae larvae along the Southeastern Brazilian Bight (SBB, approximately 22°S and 28°S), and investigates how environmental and biological factors influence the larval distribution. Ichthyoplankton samples were collected in 10 oceanographic cruises conducted from 1975 to 1981. Serranidae larvae were identified into 15 species, including 11 genera and four subfamilies. Except for Diplectrum formosum, which was widely distributed throughout the SBB, Hyporthodus spp. and Baldwinella vivanus were distributed in the southern portion of the SBB, while other species were distributed mainly in the northern portion of the SBB, inside the 200 m isobath. Local depth, latitude, distance from the closest island and salinity were factors that influenced significantly on the distribution and abundance of the most abundant taxa D. formosum, Diplectrum spp., Serranus spp. and Mycteroperca spp. Significant progress was made in identifying grouper larvae from the SBB (Epinephelus morio, Epinephelus itajara and Hyporthodus nigritus).
DOI: 10.6084/m9.figshare.11314220
title: Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markers

description: Abstract Pampus argenteus (Perciformes: Stromateidae) is widely distributed along the coast of China, Indian Ocean, Arabian Gulf and North Sea. Due to overfishing and environmental degradation, its resources reduced year after year. Thus, new management strategies are urgently needed for the sustainable growth and utilization of this species. Characterization of the genetic variation of this fish species is essential for conserving the genetic resource and restraining the population decline. Therefore, it is necessary to have a clear understanding of the intraspecific genetic diversity and population structure of the species. In this study, we assess the genetic diversity and population structure of P. argenteus by using microsatellites. We genotyped 240 P. argenteus individuals from eight wild populations collected from Shidao (SD), Lianyungang (LYG), Lvsi (LS), Zhoushan (ZS), Dongtou (DT), Xiapu (XP), Haikou (HK), and Beibuwan (BBW) along the coast of China using fifteen polymorphic microsatellites. A total of 139 alleles were determined at 15 loci across the eight populations, and a relatively high level of genetic diversity was observed, with observed heterozygosity (Ho) and expected heterozygosity (He) ranging from 0.100 to 1.000, and from 0.669 to 0.934 per locus-location combination, respectively. LS had the highest average allele (number of alleles, A=15.200), and HK the lowest (A=13.000). Hos of P. argenteus are less than Hes, indicating lack of heterozygote within populations. Analysis of molecular variance (AMOVA) showed that most variation (95.66%) occurred within populations, suggesting that this is the main source of total variance. This study will provide useful information for conservation and sustainable exploitation of this important fishery resource.
DOI: 10.6084/m9.figshare.11314220.v1
title: Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markers

description: Abstract Pampus argenteus (Perciformes: Stromateidae) is widely distributed along the coast of China, Indian Ocean, Arabian Gulf and North Sea. Due to overfishing and environmental degradation, its resources reduced year after year. Thus, new management strategies are urgently needed for the sustainable growth and utilization of this species. Characterization of the genetic variation of this fish species is essential for conserving the genetic resource and restraining the population decline. Therefore, it is necessary to have a clear understanding of the intraspecific genetic diversity and population structure of the species. In this study, we assess the genetic diversity and population structure of P. argenteus by using microsatellites. We genotyped 240 P. argenteus individuals from eight wild populations collected from Shidao (SD), Lianyungang (LYG), Lvsi (LS), Zhoushan (ZS), Dongtou (DT), Xiapu (XP), Haikou (HK), and Beibuwan (BBW) along the coast of China using fifteen polymorphic microsatellites. A total of 139 alleles were determined at 15 loci across the eight populations, and a relatively high level of genetic diversity was observed, with observed heterozygosity (Ho) and expected heterozygosity (He) ranging from 0.100 to 1.000, and from 0.669 to 0.934 per locus-location combination, respectively. LS had the highest average allele (number of alleles, A=15.200), and HK the lowest (A=13.000). Hos of P. argenteus are less than Hes, indicating lack of heterozygote within populations. Analysis of molecular variance (AMOVA) showed that most variation (95.66%) occurred within populations, suggesting that this is the main source of total variance. This study will provide useful information for conservation and sustainable exploitation of this important fishery resource.
DOI: 10.6084/m9.figshare.10074287
title: Lipid production in Dunaliella bardawil under autotrophic, heterotrophic and mixotrophic conditions

description: ABSTRACT Many microalgae are rich in lipid. Due to their low growth rates in the autotrophic culture, the best alternative is to cultivate cells under different conditions such as heterotrophic or mixotrophic, which results in the highest yield of biomass and lipid in the shortest duration. In this study, Dunaliela bardawil (UTEX 2538) green microalgae was cultivated under different culture conditions, autotrophic, heterotrophic and mixotrophic, and effects on cell concentration, lipid production and reactive oxygen species (ROS), total chlorophyll and beta-carotene concentrations were investigated. Due to very low cellular growth, this alga is not recommended for heterotrophic culture. In terms of mixotrophic conditions containing different concentrations of glucose or acetate, the highest cell growth and lipid production in 60mM glucose was similar to the control (autotrophic condition), while the concentrations of chlorophyll and beta-carotene decreased. However, at all concentrations of acetate, a slight increase in cell growth was achieved, while the lipid content decreased. Additionally, the concentrations of chlorophyll and beta-carotene increased. A positive correlation was observed between beta-carotene biosynthesis and lipid production, as well as levels of reactive species of oxygen and lipid production in the presence of glucose and acetate. This study showed that for D. bardawil the mixotrophic culture with 60mM glucose was the most suitable type of culture for increasing lipid content and cell growth rates in less time (one week).
DOI: 10.6084/m9.figshare.10074287.v1
title: Lipid production in Dunaliella bardawil under autotrophic, heterotrophic and mixotrophic conditions

description: ABSTRACT Many microalgae are rich in lipid. Due to their low growth rates in the autotrophic culture, the best alternative is to cultivate cells under different conditions such as heterotrophic or mixotrophic, which results in the highest yield of biomass and lipid in the shortest duration. In this study, Dunaliela bardawil (UTEX 2538) green microalgae was cultivated under different culture conditions, autotrophic, heterotrophic and mixotrophic, and effects on cell concentration, lipid production and reactive oxygen species (ROS), total chlorophyll and beta-carotene concentrations were investigated. Due to very low cellular growth, this alga is not recommended for heterotrophic culture. In terms of mixotrophic conditions containing different concentrations of glucose or acetate, the highest cell growth and lipid production in 60mM glucose was similar to the control (autotrophic condition), while the concentrations of chlorophyll and beta-carotene decreased. However, at all concentrations of acetate, a slight increase in cell growth was achieved, while the lipid content decreased. Additionally, the concentrations of chlorophyll and beta-carotene increased. A positive correlation was observed between beta-carotene biosynthesis and lipid production, as well as levels of reactive species of oxygen and lipid production in the presence of glucose and acetate. This study showed that for D. bardawil the mixotrophic culture with 60mM glucose was the most suitable type of culture for increasing lipid content and cell growth rates in less time (one week).
DOI: 10.6084/m9.figshare.11314172
title: Geospatial analysis of the effects of tsunami on coral and mangrove ecosystems of Mayabunder in Andaman Islands, India

description: Abstract Mangroves and coral reefs are among the major ecosystems of tropical and subtropical coastlines. The Andaman group of islands, situated at the juncture of Bay of Bengal and Indian Ocean, are one of the richest coastal ecosystems of India in terms of biodiversity. Since the tsunami waves of 2004 affected this region severely, the outer fringes as well as inland areas of these islands faced extensive ecological degradation. Mayabunder is one such place of this region, where corals and mangroves had experienced both natural and anthropogenic threat. Considering the notable vulnerability of this coastal environment, the present study aimed to assess the transformations of the coral and mangrove ecosystems at Mayabunder both in pre-tsunami and post-tsunami periods till the present year using multi-temporal satellite imageries and geospatial techniques. Results showed that the areal coverage of healthy living coral reefs was reduced by 466.56 ha (10.42 %) from 1990 to 2000. Afterwards, the coupled ecosystem had experienced serious degradation again during the 2000−2010 phase. The areal coverage of dense mangroves decreased by 47.37%, whereas the area of dead coral covers showed a significant rise of 55.52%. However, partial restoration of both mangroves as well as healthy corals had also been observed here in recent years. It was raised from the extensive field visits and feedbacks from local inhabitants that this restoration initiative could become more effective if a participatory mode of management is adopted.
DOI: 10.6084/m9.figshare.11314172.v1
title: Geospatial analysis of the effects of tsunami on coral and mangrove ecosystems of Mayabunder in Andaman Islands, India

description: Abstract Mangroves and coral reefs are among the major ecosystems of tropical and subtropical coastlines. The Andaman group of islands, situated at the juncture of Bay of Bengal and Indian Ocean, are one of the richest coastal ecosystems of India in terms of biodiversity. Since the tsunami waves of 2004 affected this region severely, the outer fringes as well as inland areas of these islands faced extensive ecological degradation. Mayabunder is one such place of this region, where corals and mangroves had experienced both natural and anthropogenic threat. Considering the notable vulnerability of this coastal environment, the present study aimed to assess the transformations of the coral and mangrove ecosystems at Mayabunder both in pre-tsunami and post-tsunami periods till the present year using multi-temporal satellite imageries and geospatial techniques. Results showed that the areal coverage of healthy living coral reefs was reduced by 466.56 ha (10.42 %) from 1990 to 2000. Afterwards, the coupled ecosystem had experienced serious degradation again during the 2000−2010 phase. The areal coverage of dense mangroves decreased by 47.37%, whereas the area of dead coral covers showed a significant rise of 55.52%. However, partial restoration of both mangroves as well as healthy corals had also been observed here in recent years. It was raised from the extensive field visits and feedbacks from local inhabitants that this restoration initiative could become more effective if a participatory mode of management is adopted.