cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/tx277syzhm
title: PaddyVarietyBD: Classifying Paddy Variations of Bangladesh with a Novel Image Dataset

description: Paddy Varieties Image Dataset Description:
This dataset provides a comprehensive collection of 35 paddy variety images, compiled from the Bangladesh Rice Research Institute (BRRI) and the Bangladesh Institute of Nuclear Agriculture (BINA). The purpose of this dataset is to aid in the identification and classification of distinct paddy varieties based on their unique features, supporting both agricultural research and machine learning applications.
Paddy Varieties Included:
The dataset covers a total of 35 paddy varieties, as follows:
• BD Varieties: BD30, BD33, BD34, BD49, BD51, BD52, BD56, BD57, BD70, BD72, BD75, BD76, BD79, BD85, BD87, BD91, BD93, BD95
• Binadhan Varieties: Binadhan7, Binadhan8, Binadhan10, Binadhan11, Binadhan12, Binadhan14, Binadhan16, Binadhan17, Binadhan19, Binadhan20, Binadhan21, Binadhan23, Binadhan24, Binadhan25, Binadhan26
• BR Varieties: BR22, BR23
Dataset Breakdown:
The dataset consists of two main components: Original Images and Augmented Images. These are divided into individual folders for each of the 35 paddy varieties, providing easy access for further analysis and use.
• Original Image Dataset:
o Total number of images: 14,000
o Image format: JPG
o Image resolution: 640x480 pixels
• Augmented Image Dataset:
o Total number of images: 56,000
o Image format: JPG
o Image resolution: 640x480 pixels
o Augmentation techniques: Rotation (90° left, 90° right, 180°), flipping, and shearing
Image Capture and Methodology
Images for this dataset were captured using high-resolution digital microscope cameras, with magnifications of 1600x and 1000x. These images were taken in September 2023, ensuring high-quality close-up views of the paddy varieties.
Dataset Storage and Access:
The dataset is stored in two separate zip files:
• Original.zip contains the 14,000 original images.
• Augmented.zip contains the 56,000 augmented images.
Each zip file includes 35 individual folders, with each folder corresponding to a specific paddy variety.
DOI: 10.6084/m9.figshare.1328628.v2
title: Study I - HOPG data taken alongside the BFAS

description: The portion of the Hopg data taken along side the BFAS scales as described in Warfel (2015)
DOI: 10.6084/m9.figshare.17129870.v1
title: Hospitalized Individuals with COVID-19 in Kano, Nigeria - Interview (English translated version)

description: Management of patients with covid-19 needing hospitalisation is challenging worldwide. However, little or no information has been gathered regarding the experiences of healthcare workers (hcw s) involved in the care of patients with Covid-19 in poorly resourced settings. This study explored the experiences of HCWs managing hospitalised patients with Covid-19 in a treatment centre in Kano, Nigeria. HCWs directly or indirectly involved in managing patients with Covid-19 in one of the two treatment centres in Kano, Nigeria, were sampled based on being information-rich cases. The study participants were interviewed individually via telephone using a semi-structured interview guide. Data collection was stopped when content saturation was attained. Data was analysed using thematic synthesis.<br>
DOI: 10.6084/m9.figshare.25952845.v1
title: An AS-OCT image dataset for deep learning-enabled segmentation and 3D reconstruction for keratitis

description: This dataset contains a total of 1168 AS-OCT images of patients with keratitis, including 768 full-frame images (6 patients). Each image has associated segmentation labels for lesions and cornea, and also iris for full-frame images. The 2 categories of images are separated into two folders, named “Partial-frame_Dataset” and “Full-frame_Dataset” respectively. In each folder, original AS-OCT images in the BMP format are provided in the “Original_AS-OCT_Images” folder named as “n.bmp”, and corresponding annotated files in the JSON format are provided in the “Experts_Annotations” folder named as “n.json”. Anonymized information about participants was also provided in the file “Demographics of participants.xlsx”.
DOI: 10.6084/m9.figshare.27280887.v1
title: pyrazine.xyz

description: pyrazine molecule
DOI: 10.6084/m9.figshare.28379111.v1
title: Exploring the Influence of Social Media Use Motivations on Acculturation Orientations and Psychological Adaptation Among Chinese Students in Malaysia

description: This study contributes to the understanding of how social media use motivations relate to the acculturation processes and psychological adaptation of international students, a topic of significant relevance in the current global academic landscape.
DOI: 10.6084/m9.figshare.7944302.v2
title: data of medullary thyroid cancer SEER 2004-2015.xlsx

description: data extracted from the SEER database between 2004 and 2015 to evaluate prognostic factors of medullary thyroid cancer.
DOI: 10.17632/2xshj88y7k
title: Repository for TEC data and simulation outputs used in the study "The Impact of Receiver-Satellite Line-of-sight Geometry on GNSS TEC Observations of TIDs".

description: The repository includes TEC data, MAGIC-GEMINI modeled electron densities, and simulated TEC along real LOSs on 27th May 2017 at 19:30 UT.
Description of data and simulation output is found in ReadMe.txt
DOI: 10.17632/sm2h77t82f
title: A Meta-Analysis

description: ghghfg
DOI: 10.6084/m9.figshare.21304293.v1
title: EEA GMP Field Trial notifications with numbers and plot size analyses

description: The datasheet contains a list of GM higher plants field trials notified to the national authorities of various member states of the European Economic Area, between October 2002 and September 30th 2022, with hyperlinks to particular notifications, as well as analysis of the data pertaining to numbers of trials per year, per country and sizes of the trials in the decade 2013-2022. It also contains two figures presenting some of the data.
DOI: 10.6084/m9.figshare.22016024.v2
title: Chromosome-level genome assembly and annotation of the prickly nightshade Solanum rostratum

description: The annotation information of the prickly nightshade Solanum rostratum, including non-coding RNAs, repeat sequences and protein-coding genes.
DOI: 10.6084/m9.figshare.23508246.v1
title: Cannes official section films 1946-2019

description: Datos Festival de Cannes: Título; Director; Países; Idioma; Booleanos: Género, Coproducción, Varios idiomas; Notas; Taquilla global (2010-2019) Countries; Language; Boolean: Genre, Co-Production, Various Languages; Notes; Global Box Office (2010-2019)
DOI: 10.6084/m9.figshare.26377726.v1
title: Core to core correlations for lakes Paringa and Mapourika

description: Interactive files for the programme Corelzyer for viewing high resolution core images and core to core correlations.
DOI: 10.6084/m9.figshare.26424589.v1
title: MSTFCM

description: The code and data for "A multi-task spatio-temporal fully convolutional model incorporating interaction patterns for traffic flow prediction"
DOI: 10.17632/2znkfwhzs7
title: Bearing and Gearbox Datasets for Few-shot Learning Fault Diagnosis

description: This dataset is mainly used for the Paper named "Metric-based meta-learning model for few-shot fault diagnosis under multiple limited data conditions", there are 4 kinds of experiments in this paper, the former 2 is for rolling bearing and the latter 2 is for gearbox, all the data have been split in the Training set and Testing set, one can reproduce the result by directly loading these data.
DOI: 10.17632/3cn7m9ptnc
title: Data for: Cytotoxic polyhydroxy serratene triterpenoids from Lycopodium complanatum

description: The HRESIMS, UV, 1D and 2D NMR of compounds 1-6 are available in the supplementary data.
DOI: 10.17632/65wcf3ggv5
title: EDUCACIÓN AMBIENTAL OBDULIO BANDA

description: Los fundamentos de la educación ambiental
DOI: 10.17632/dhr9djzdt8
title: Data for: N-Acyl pyrazoles: effective and tunable inhibitors of serine hydrolases

description: Supporting Information
DOI: 10.25398/rd.northumbria.28731308.v1
title: <b>Evaluating social media relationships for content creators under threat of de-platforming - interview transcripts</b>

description: This is the repository concerning the interview connected to the above study, 12 interviews carried out with censored, marginalised content creators in the UK, Ireland, Italy, Australia and the USA.<br><br>The linked study examines the experiences of content creators at risk of de-platforming and their concept of community in precarious digital spaces. For content creators that use nudity and sexuality as a form of expression, networking and as a source of income, community membership is key. Yet, access to that community is constantly under threat due to content or account removal, known as de-platforming. Through interviews with content creators who had experienced de-platforming, this paper explores their ‘corpo-civic’ relationship with Instagram and TikTok, hybrid locations caught between a work and social space mirroring these platforms’ hybrid nature, between corporate ownership and public use. In doing so, we reflect on the challenges of aspirational creator work and its related difficulty in building, managing and engaging communities in precarious spaces, especially when threatened with de-platforming and relying on a hybrid friend / customer relationship.
DOI: 10.6084/m9.figshare.13372958.v1
title: 59k HCP subject entry for pycortex database

description: This is a PyCortex subject entry for the surfaces of the 59k Human Connectome Project anatomy. <br>The pial, fiducial, smoothwm, and inflated surfaces have all been taken from HCP subject 100610; the flattened representation is the "standard" Colin surface. The first areas of the visual, auditory, and somatosensory streams have been delineated in the overlays.svg file, and the major sulci have been delineated.<br>One should be able to use this by copying it to the PyCortex subject database.
DOI: 10.6084/m9.figshare.14183027.v1
title: Physical and numerical experimental datasets for Forchheimer flow

description: Physical and numerical experimental results
DOI: 10.6084/m9.figshare.5616250
title: Dataset for: Tumor-adjacent tissue co-expression profile analysis reveals pro-oncogenic ribosomal gene signature for prognosis of resectable hepatocellular carcinoma

description: Molecular markers are not used in the determination of prognosis and treatment for HCC patients. We proposed that the identification of the common pro-oncogenic pathways in primary tumor (PT) and adjacent non-malignant tissues (AT) predicting HCC patient risks result in the HCC marker discovery. We examined the genome-wide mRNA expression profiles of paired PT and AT samples from 321 HCC patients. The workflow integrated differentially expressed gene selection, gene ontology enrichment, computational classification, survival predictions, image analysis and experimental validation methods. We developed a 24-ribosomal gene-based HCC classifier (RGC), which are prognostically significant in both PT and AT. The RGC gene overexpression in PT was associated with a poor prognosis in the training (HR=8.2, p=9.4E-06) and cross-cohort validation (HR=2.63, p=0.004) datasets. The multivariate survival analysis demonstrated the significant and independent prognostic value of the RGC. The RGC displayed a significant prognostic value in AT of the training (HR=5.0, p=0.03) and cross-validation (HR=1.9, p=0.03) HCC groupsconfirming the accuracy and robustness of RGC. Our experimental and bioinformatics analyses suggested a key role for c-MYC in the pro-oncogenic pattern of ribosomal biogenesis co-regulation in PT and AT. Microarray, qRT-PCR and quantitative immunohistochemical studies of the PT showed that DKK1 in PT is the perspective biomarker for poor HCC outcomes. The common co-transcriptional patterns of ribosome biogenesis genes in PT and AT from HCC patients suggests a new scalable prognostic system, supported by the model of tumor-like metabolic redirection/assimilation in non-malignant AT. The RGC, comprising 24 ribosomal genes, is introduced as a robust and reproducible prognostic model for stratifying HCC patient risks. The adjacent non-malignant liver tissue alone or in combination with HCC tissue biopsy could be an important target to develop predictive and monitoring strategies and evidence-based therapeutic interventions to reduce the risk of post-surgery relapse of HCC patients.
DOI: 10.17632/g8xz5vdds8
title: Interdisciplinary Research Maps - Scattertext input

description: Files attached here are (1) Management journals results (data downloaded from Scopus), (2) Environmental journal results (data downloaded from Scopus), and (3) Scattertext Input.
DOI: 10.6084/m9.figshare.25237489.v1
title: Repeat and Functional Annotation of the Telomere-to-telomere Cultivated and Wild Soybean Genomes

description: we present a telomere-to-telomere gapless genome assembly of both cultivated soybean (<i>G. max</i>) and its wild counterpart (<i>G. soja</i>).
DOI: 10.6084/m9.figshare.3558711.v1
title: Supplement 1. R script files to run the multispecies simulations in parallel, and two data files containing monthly rainfall records for Medindee, New South Wales, Australia (with and without El Niño events).

description: File List 00. Control.r (MD5: 81cb61a318164524ec614c6f307e3203) 01. Holocene.r (MD5: ac731ea765588a12a6125151e7026a46) 02. Mrufus.r (MD5: 9b821ba5bc6bac9ee3cd4fe4e5c90101) 03. Tcyno.r (MD5: 649b7174f6eb95c8e74f91d50cd374a9) 04. Sharris.r (MD5: 8b1ef29fd2af7b9ebcd588f191214311) 05. Clupus.r (MD5: 80575e0ebe1e97187f563512aa986632) Medindee Rainfall from BOM no El Nino.csv (MD5: b13cefaa9360d1d66409655fd417a698) Medindee Rainfall from BOM.csv (MD5: 0cc9383ba145c531cef0dc7f69165ada) Description The supplements provide the full R code to run the multi-species simulation models, as well as two data files containing monthly rainfall records for Medindee, NSW (with and without El Niño events). The latter two files are read into memory and used to create rainfall distributions for 5.5 ka and, for simulations including climate change, for the current day. Further details are provided below, and in comments throughout the R code. -- TABLE: Please see in attached file. --
DOI: 10.6084/m9.figshare.4262972.v2
title: MDE in embedded software industry-Raw survey data-XLS

description: MDE in embedded software industry-Raw survey data-Aug 17, 2016.xlsx
DOI: 10.17632/2zy5vsbvhh
title: Flowers&fruit coffee production

description: Number of flowers and fruits, fruit set, coffe production (kg) per bush with Non-“desmusgue” (ND) and “Desmusgue” (D) in two coffee plantations (C1 and C2) with different species and during two production cycle (2015 and 2016).
DOI: 10.17632/v3kj6zn9tf
title: SMA libraries for metabolite NMR-based identification and quantification in cinnamon extracts

description: Metabolite libraries built from NMR spectra for the metabolomics analysis of cinnamon extracts, using the Simple Mixture Analysis (SMA) tool implemented in MestreNova 14.1 software.
DOI: 10.6084/m9.figshare.19099619.v9
title: scRNA-seq data for exploration

description: Subset of expression matrix from paper:<br>https://www.sciencedirect.com/science/article/pii/S0092867418313941<br>
DOI: 10.6084/m9.figshare.22262095.v1
title: Phylogeny trees of Diprionidae

description: Phylogenetic trees based on matrix 1 (BI), matrix 2 (ML) and matrix 3(BI) under the CAT+GTR model.
DOI: 10.6084/m9.figshare.26496889.v1
title: ISX 240724 Run files

description: Peripheral human neutrophils were isolated as above and pretreated with 50 μg/mL of purified human THP, sialic acid (500 ng/mL, catalog no. A0812, Sigma Aldrich), or mock-treated, and incubated at 37°C in 5% CO2 for 30 min, and then incubated for an additional 2.5 h with PMA (25 nM). The following antibodies (0.5 μg/mL) and dyes (concentrations provided below) were added: Anti-MPO-FITC (clone M1/70, catalog no. 553310; BD Biosciences), Fc Block, Live/Dead Near IR (1:200 of stock, catalog no. L34975; Thermo Fisher Scientific), Sytox orange (100 nM, catalog no. S34861; Thermo Fisher Scientific), and Hoechst 33342 (200 nM, catalog no. 62249; Thermo Fisher Scientific). After a 30-minute incubation on ice, samples were washed 1X, resuspended in a 1:1 mixture of fresh FACS buffer and PBS. Cell morphology via imaging flow cytometry was assessed as described previously (PMID: 30985081). An Amnis ImageStream X Mark II imaging flow cytometer was used for data acquisition with a 60X objective, low flow rate and high sensitivity, and 405, 488, 561 and 635 nm lasers set to 120, 150, 100 and 150 mW respectively. Data were analyzed using the IDEAS version 6.3 software package. Clipped images were retained due to the large size of NETs, and single stained controls were used for compensation. Masking was performed using the default “object (tight)” and “morphology” algorithms as described (PMID: 30985081). Statistics reports were generated using IDEAS and processed IDEAS data analysis files (.daf) were then analyzed in FCS Express 7 to generate analysis plots.
DOI: 10.6084/m9.figshare.28467281.v4
title: Haplotype-resolved chromosomal-level genome assembly and annotation of <i>Oxalis</i> <i>articulata</i>

description: Here are the files of haplotype-resolved chromosomal-level genome assembly and annotation of <i>Oxalis</i> <i>articulata</i>FA, GFF, PEP, CDS files are all inculded.
DOI: 10.6084/m9.figshare.5127538.v1
title: Supplementary Material for: Effects of Peroxynitrite on Relaxation through the NO/sGC/cGMP Pathway in Isolated Rat Iliac Arteries

description: <b><i>Background/Aims:</i></b> The present study investigated the mechanism by which peroxynitrite impairs vascular function through the nitric oxide (NO)/soluble guanylate cyclase (sGC)/cGMP pathway. <b><i>Methods:</i></b> Mechanical responses of rat external iliac arteries without endothelium were studied under exposure to peroxynitrite. cGMP concentrations were determined by enzyme immunoassay. <b><i>Results:</i></b> Relaxation induced by BAY 41-2272 (sGC stimulator) was impaired under exposure to peroxynitrite, whereas that by BAY 60-2770 (sGC activator) was enhanced. These responses were correlated with tissue levels of cGMP. Effects of peroxynitrite on the relaxant responses to BAY compounds were also observed in the presence of superoxide dismutase (SOD) or tempol, both of which scavenge a certain kind of reactive molecules other than peroxynitrite. As is the case with the relaxant response to BAY 41-2272, acidified NaNO<sub>2</sub>- and nitroglycerin-induced relaxations were markedly attenuated by exposing the arteries to peroxynitrite, which was not abolished by preincubation with SOD or tempol. On the other hand, peroxynitrite exposure had no effect on the 8-Br-cGMP-induced vasorelxation. <b><i>Conclusion:</i></b> These findings suggest that peroxynitrite interferes with the NO/sGC/cGMP pathway by altering the redox state of sGC. It is likely that peroxynitrite can shift the sGC redox equilibrium to the NO-insensitive state in the vasculature.
DOI: 10.17632/3cnhdvwmn5
title: Data for: Risk-adjusted Return Managed Carry Trade

description: The file reports data used for the paper: the risk-ajusted return managed carry trade.
DOI: 10.6084/m9.figshare.25911340.v1
title: data_copy.xls

description: Psychological Factors Related to Positive Post-Breakup Adjustment: The Roles of Self-Concept Clarity, Resilience, Self-Esteem, and Optimism
DOI: 10.6084/m9.figshare.27176001.v5
title: Dataset Supporting the Bibliometric Review of Cone Beam Computed Tomography in Paediatric Dentistry

description: This dataset includes bibliometric data extracted from 517 articles related to the use of Cone Beam Computed Tomography (CBCT) in paediatric dentistry. It covers publication dates, citation counts, study designs, journals, keywords, and geographical distributions, as well as the BIBLIO-checklist file, a guideline for bibliometric reviews. The dataset was used in the bibliometric review titled ‘A Global Overview of the Use of Cone Beam Computed Tomography in Dentistry: Focusing on Paediatric Patients’.<br><br>
DOI: 10.6084/m9.figshare.28979162.v1
title: The original variation information files of re-sequencing for 154 soybean RIL populations

description: The original variation information files of re-sequencing for 154 soybean RIL populations, in which the first two samples are the parental materials of the population. Dual-end sequencing was performed using the Illumina NovaSeq 6000 platform with a sequencing depth of 10x, and variation calling was carried out using BWA + BCFTools.
DOI: 10.17632/v5ttsjnsgk
title: Deep learning based blood abnormalities detection as a tool for VEXAS syndrome screening

description: Annotated image dataset from the paper :

De Almeida Braga, C., Bauvais, M., Sujobert, P., Heiblig, M., Jullien, M., Le Calvez, B., Richard, C., Le Roc'h, V., Rault, E., Hérault, O., Peterlin, P., Garnier, A., Chevallier, P., Bouzy, S., Le Bris, Y., Néel, A., Graveleau, J., Kosmider, O., Paul-Gilloteaux, P., Normand, N. and Eveillard, M. (2024), Deep Learning-Based Blood Abnormalities Detection as a Tool for VEXAS Syndrome Screening. Int J Lab Hematol. https://doi.org/10.1111/ijlh.14368

Please refer to the paper for additionnal information on collection methods and findings related to the data.
Please cite the paper if you use this data.

The project contains .csv annotation files and image folders structured as follows :

train/
 centre_ID/
 patient_ID/
 slide_ID/
 000000.jpg
 000001.jpg
 ...
test/
 centre_ID/
 patient_ID/
 slide_ID/
 ...
train.csv
test.csv
DOI: 10.6084/m9.figshare.19249013.v1
title: Untitled Item

description: The study answers the following questions: 1. What is the nature of feedback provided by Saudi EFL instructors? 2. What is the Saudi EFL learners' perception about the role of WCF in enhancing the quality of their writing output? 3. What are the Saudi EFL learners’ preferences in WCF in EFL? <br>The current study aimed to examine the nature of WCF in the written output of learners in the EFL classrooms and the beliefs and attitudes of the learners to WCF. To this end, the study is quantitative in nature, and data have been collected in two forms: One, the nature of the WCF provided by EFL teachers in a Saudi university; and two, responses to a questionnaire that examines the learners’ preferences and beliefs towards the different types of WCF as tools in language improvement. Therefore, the written output generated for the study was not evaluated for its quality, and focus was diligently kept on the WCF.
DOI: 10.6084/m9.figshare.5671645.v1
title: XPS - table 4.8

description: XPS analysis - table 4.8<br>
DOI: 10.17632/t9nv93mvrp
title: Operando X-ray and Postmortem Investigations of High-voltage Electrochemical Degradation in Single-crystal-LiNiO2–Graphite Cells

description: Raw data for Operando X-ray and Postmortem Investigations of High-voltage Electrochemical Degradation in Single-crystal-LiNiO2–Graphite Cells
DOI: 10.6084/m9.figshare.7611662.v1
title: VenomSeq data (frozen)

description: VenomSeq data for 25 venomous species, in JSON format.