cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.xd2547djc
title: Data for: The correlated evolution of foraging mode and reproductive output in lizards

description: Life-history theory suggests that the optimal reproductive output of an
 organism is affected by factors such as energy acquisition and predation
 risk. The observation that some organisms actively search for their prey
 and others ambush them creates the expectation of different energy needs
 and predation risk associated with each foraging behavior, the so-called
 “foraging-mode paradigm”.  Although this paradigm has been around
 for decades, the empirical evidence consists of conflicting results
 derived from competing models based on different mechanisms. For instance,
 models within the foraging-mode paradigm suggest that widely-foraging
 females have evolved low reproductive output, because a heavy reproductive
 load decreases their ability to escape from predators. By contrast, a
 long-standing prediction of evolutionary theory indicates that organisms
 subject to high extrinsic mortality, should invest more in reproduction.
 Here, we present the first partial evidence that widely-foraging species
 have evolved greater reproductive output than have sit-and-wait species,
 which we attribute to a larger body size and greater mortality among
 mobile foragers. According to our findings, we propose a theoretical model
 that could explain the observed pattern in lizards, suggesting ways for
 evolutionary ecologists to test mechanistic hypotheses at the
 intraspecific level.
description: We used published estimates of life history and foraging behavior
 for 485 species of lizards grouped in 32 families, excluding
 amphisbaenians and snakes. See the "README.txt" file for
 detailed information.
DOI: 10.15468/dl.e65agf
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((14.10313 51.48054,14.31905 51.48054,14.31905 51.56686,14.10313 51.56686,14.10313 51.48054))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Brachycercus harrisella"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003043-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.gqnk98spw
title: Sublethal reproductive costs associated with experimental heat waves in the copepod, Tigriopus californicus

description: Physiological stress may induce sublethal effects on fitness by limiting
 energy availability and shifting energy allocation, which can incur
 reproductive costs. Sublethal reproductive costs may affect vital rates,
 linking stress events such as heat waves to population demography. Here,
 we test the hypothesis that heat wave intensity and consecutive days of
 exposure to heat wave temperatures impact survival and individual
 reproductive success. We subjected groups of the marine harpacticoid
 copepod, Tigriopus californicus, to six heat wave regimes that differed in
 maximum exposure temperature, 26°C or 32°C, and number of consecutive
 exposure days (1, 2, or 7), and predicted that survival and reproductive
 costs would increase with heat wave intensity and duration. We measured
 individual survival and offspring production during the heat waves and for
 two weeks following the last day of each experimental heat wave. Despite
 similar survivorship between the two maximum temperature treatments,
 sublethal effects of heat wave intensity were observed. Consistent with
 our predictions, individuals that experienced the higher maximum
 temperature 32°C heat waves produced fewer offspring overall than those
 that experienced the 26°C heat wave. Furthermore, the number of naupliar
 larvae (nauplii) per clutch was lower in the 32°C group for egg clutches
 produced immediately after the final day of exposure. Our results are
 consistent with the hypothesis that increasing thermal stress can lead to
 sublethal costs, even with no discernible effects on mortality. Heat waves
 may not always have lethal effects on individuals, especially for
 individuals that are adapted to routine exposures to high temperatures,
 such as those occupying the high intertidal. Costs, however, associated
 with stress and/or reduced performance due to non-linearities, can affect
 short-term demographic rates. The effect of these short-term sublethal
 perturbations is needed to fully understand the potential for population
 rescue and evolution in the face of rapid climate change.
description: Please refer to the manuscript for a description of the
 methods.
description: Please see the README file.
DOI: 10.5061/dryad.hhmgqnkj5
title: Population growth in response to density and extrinsic heat waves in the copepod, Tigriopus californicus

description: Heat waves are transient environmental events but can have lasting impacts
 on populations through lethal and sub-lethal effects on demographic vital
 rates. Sub-lethal temperature stress affects individual energy balance,
 potentially affecting individual fitness and population growth.
 Environmental temperature can, however, have distinct effects on different
 life-history traits, and the net effect of short-term temperature stress
 on population growth may lead to different population responses over
 different time frames. Furthermore, sublethal temperature responses may be
 density dependent, leading to potentially complicated feedbacks between
 heat stress and demographic responses over time. Here, we test the
 hypotheses that: (i) populations subjected to higher heat wave
 temperatures and longer heat wave durations are more negatively affected
 than those subjected to less intense and shorter heat waves, (ii) heat
 wave effects are more pronounced during density-dependent population
 growth phases, and (iii) population density patterns over time mirror the
 short-term population growth rate responses. We subjected experimental
 populations of the marine copepod Tigriopus californicus to short-term
 heat stress perturbations (“heat waves”) at two different time points
 during a 100-day period. Overall, we found that population growth rates
 and density responded similarly (and moderately) to heat wave intensity
 and duration, and that the heat wave effects on populations were largely
 density-dependent. We detected heat wave effects on population growth and
 density at low densities, but not at high densities. At low densities, we
 found that population growth declined with heat wave duration for the more
 intense heat wave intensity group, but did not detect an effect of heat
 wave duration within the less intense heat wave intensity group. Our study
 demonstrates that while ephemeral density-independent factors can
 influence population vital rates, understanding the longer-term
 consequences of transient perturbations on populations requires
 understanding these effects in the context of density dependence and its
 relationship to temperature. Higher densities may buffer the negative
 effects of intense heat waves and confer some degree of resilience.
description: Please refer to the methods section of the manuscript.
description: Please refer to the README_tig_pop_data.text file.
DOI: 10.5061/dryad.bg79cnpcg
title: Data from: Chemical extraction of phosphorus from dairy manure and utilization of recovered manure solids

description: This is digital research data corresponding to a published manuscript,
 Chemical extraction of phosphorus from dairy manure and utilization of
 recovered manure solids. Agronomy 2020, 10,
 1725; doi:10.3390/agronomy10111725 Repeated land application of
 dairy manure can increase soil phosphorus above crop requirements because
 of manure’s low nitrogen (N) to phosphorus (P) ratio (N:P &lt; 4:1).
 This soil P build-up can lead to off-site P transport and impairment of
 surface water quality. We evaluated a treatment process to extract P from
 manures, called Quick Wash, integrated with a double-stage solids
 separation system to recover coarse and fine manure solids. The Quick Wash
 process uses a combination of acid, base, and organic polymers to extract
 and recover P from manures, improving the N:P ratio of recovered manure
 solids (RMS).
DOI: 10.5061/dryad.8sf7m0cqb
title: Differential parasitism of native and invasive widow spider egg sacs

description: During colonization, invasive species establish and spread to new
 locations, where they may have an advantage over native species. One such
 advantage may be avoidance of predators or parasites by means of better
 defences or due to lower suitability as a host. We conducted field surveys
 and lab behavioural experiments to investigate the differential
 susceptibility of two widow spider species—one native to
 Israel, the white widow spider Latrodectus pallidus, and
 one invasive species, the brown widow spider, Latrodectus
 geometricus—to an egg sac parasitoid wasp, Philolema latrodecti.
 In collections of egg sacs from six paired sites of L. geometricus and L.
 pallidus populations in the Negev Desert, Israel, we found higher
 parasitism rates on the egg sacs of the native L. pallidus. In no-choice
 trials, we found that wasps were more likely to parasitize and oviposited
 longer on L. pallidus egg sacs than on L. geometricus egg sacs. In
 two-choice tests with spider webs and egg sacs, parasitoids made first
 contact with L. pallidus webs more often and faster. After developing
 inside of L. pallidus egg sacs, more parasitoids emerged and were larger
 than those emerging from L. geometricus egg sacs. Potentially better
 defence of the L. geometricus egg sacs as well as the parasitoid’s fitness
 advantages gained from parasitizing L. pallidus egg sacs may explain the
 higher parasitism rate in the native species. Our results suggest that the
 invasion and establishment success of L. geometricus is due, in part, to
 its ability to escape parasitism.
description: These data are of field collections to determine parasitism rate
 by <em>Philolema latrodecti </em>of <em>Latrodectus
 pallidus </em>and <em>Latrodectus geometricus </em>egg
 sacs from six paired sites in the Negev Desert, Israel. Data of laboratory
 observations of <em>P. latrodecti </em>behaviours and
 parasitism in no-choice and choice tests are included, as well as
 parasitoid development, emergence, and body size. The data are raw values
 from lab observations and measurements.
description: The readme file contains an explanation of each of the variables
 in the dataset and its measurement units. Missing or unavailable values
 are indicated with "null". Information on how the measurements
 were done can be found in the associated manuscript referenced
 above.
DOI: 10.5061/dryad.jq2bvq8b6
title: Raw data for the study titled "Fungal ectoparasites increase winter mortality of ladybird hosts despite limited effects on their immune system"

description: Winter represents a challenging period for insects inhabiting temperate
 regions. A plethora of studies have investigated how abiotic environmental
 conditions such as temperature affect insect overwintering success.
 However, only a few studies have focused on biotic factors and the
 mechanisms affecting the overwintering performance of insects. Here, we
 investigated the effects of the parasitic fungus Hesperomyces virescens on
 the overwintering performance and immune system functioning of the
 invasive ladybird Harmonia axyridis. Winter survival was significantly
 lower for infected than for uninfected beetles. Body mass loss during
 overwintering tend to be higher for infected individuals compared to
 uninfected ones and for larger beetles. In addition, parasitic infection
 reduced post-winter longevity without food in male but not female
 ladybirds. Total haemocyte and protein concentration as well as
 antimicrobial activity against Escherichia coli significantly decreased
 during ladybird overwintering. However, haemolymph parameters were only
 poorly affected by Hesperomyces infection, with the exception of
 antimicrobial activity against Escherichia coli that tended to be higher
 in infected ladybirds. Interestingly, none of the pre-winter haemolymph
 parameters were good predictors of ladybird winter survival. Overall, our
 results indicate that energy exhaustion unrelated to immune system
 challenge is the most probable explanation for increased overwintering
 mortality in infected beetles.
description: - two laboratory overwintering experiments using
 computer-instructed climatic chambers - comparison of
 uninfected and <em>Hesperomyces virescens</em> infected
 ladybirds - ladybird survival and spring longevity
 measurements - haemolymph sampling (haemocyte
 concentration, protein concentration, antimicrobial activity,
 microsporidia counts)
DOI: 10.5061/dryad.zkh1893bx
title: Tolerability of COVID-19 mRNA vaccines in patients with postural tachycardia syndrome

description: Postural tachycardia syndrome (POTS) is a form of autonomic dysregulation.
 There is increasing evidence that the etiology may be immune-mediated in a
 subgroup of patients. Patients with POTS often experience an exacerbation
 of their symptoms associated with infections and often fear the same
 symptom aggravation after vaccination. With this data we conducted a study
 to describe the tolerability of mRNA vaccines against COVID-19 and the
 consequences of a COVID-19 infection on POTS symptoms in our cohort of
 patients with neuropathic POTS.We conducted a standardized,
 checklist-based interview with 23 patients and recorded the acute side
 effects of mRNA vaccination, acute symptoms of COVID-19 infection as well
 as the effects of vaccination and COVID-19 infection on POTS symptoms. The
 following side effects were assessed in their presence (yes/no) and
 duration (days): fever, shivering, fatigue, headache, joint pain, muscle
 pain, nausea, emesis, diarrhea, and reaction at injection site (pain,
 swelling and cutaneous reaction). For COVID-19 infection, the following
 additional symptoms were queried: coughing, sore throat, rhinorrhea,
 breathlessness, loss of taste, loss of smell and chest pain. For each
 symptom, the presence (yes/no), severity (mild, moderate, severe) and
 duration (in days) were evaluated. Furthermore, the duration of the
 infection, need for hospitalization and incapacity for work were assessed.
 To assess possible exacerbation of POTS symptoms, the presence (yes/no),
 severity (mild, moderate, severe; for COVID-19 infection only) and
 duration of symptom exacerbation (in days) for the following symptoms were
 evaluated: dizziness, nausea, weakness, palpitations, lightheadedness,
 tremulousness, blurred vision, concentration difficulties, memory
 difficulties, orthostatic leg and/or arm pain, gastrointestinal symptoms,
 sleep disturbances, restless legs syndrome and orthostatic headache. Our
 observations suggest that mRNA vaccines are not associated with a higher
 frequency of acute side effects in patients with POTS. Symptom
 exacerbation as a consequence of mRNA vaccination seems to be less
 frequent and of shorter duration compared to patients who suffered a
 COVID-19 infection.   This study was carried out in accordance
 with the recommendations of the local ethics committee (Kantonale
 Ethikkommission Bern, Switzerland, project-ID: 2021-02115; 02.11.2021).
description: We conducted a standardized checklist-based interview. Data
 analysis was descriptive.
DOI: 10.5061/dryad.rr4xgxd9v
title: No evidence for trade-offs between bird diversity, yield and water table depth on oil palm smallholdings: implications for tropical peatland landscape restoration

description: Tropical peat swamp forests retain large carbon stocks and support unique
 biodiversity, but clearance and drainage for agriculture have resulted in
 fires, carbon emissions and biodiversity losses. Initiatives to re-wet
 cultivated peatlands may benefit biodiversity if this protects remaining
 forests from fire and agricultural encroachment, but there are concerns
 that re-wetting could reduce yields and damage livelihoods, as
 relationships between drainage, on-farm biodiversity, and crop yields have
 not been studied. We examined oil palm fruit yields and bird diversity on
 41 smallholder farms in Jambi (Sumatra, Indonesia), which varied in
 drainage intensity (12-month mean water table per plot from August 2018 to
 August 2019: -52 to -3 cm below ground). We also compared farm bird
 diversity with a neighbouring area of protected forest (11,000 ha, 21
 plots; mean water table per plot -3 to +15 cm). Bird species richness
 (3-18 species per plot), species composition, and oil palm yields
 (4.5-19.2 t fresh fruit bunch ha-1 yr-1) varied among farms, but were not
 detectably affected by water table depth, although ground-level vegetation
 was more complex on wetter farms. Bird richness in oil palm (mean = 10.3
 species per plot) was &lt;50% of that in forest (26 species per plot),
 and only three out of 35 conservation-priority species found in forest
 were recorded in oil palm. Synthesis & applications: Tropical
 peatlands in Indonesia have been drained to allow farmer access and
 improve farm yields, but we found no trade-offs between drainage depth,
 yields or bird diversity on smallholder oil palm farms in our study
 landscape. Current restoration initiatives to re-wet peat may benefit
 farmers by reducing fire risk, without affecting yields. Wetter farms had
 increased understorey vegetation complexity, but this did not affect bird
 diversity, so we find no evidence that re-wetting improves on-farm
 biodiversity within the studied range of drainage depths. However, on-farm
 fire reduction efforts in cultivated peatlands, including re-wetting, will
 be vital for reducing the risk of fires escaping into nearby forests,
 which contain unique and diverse bird species assemblages. Protection of
 remaining peatland forests from fire and clearance is key for biodiversity
 conservation, and for providing a source of seed dispersers and genetic
 material for future forest and landscape restoration efforts. Restoration
 of more biodiversity-friendly land covers will improve landscape
 permeability and help conserve species and the ecosystem services they
 deliver.
description: Please see detailed ReadMe.txt
description: Please see manuscript and supplementary materials for detailed
 survey, data processing and analysis methodology. Manuscript available
 from lead author on email request if not accessible via
 journal.
DOI: 10.5061/dryad.6m905qg1s
title: Cystic Fibrosis Telemedicine in the era of COVID-19 patient and staff surveys

description: The coronavirus disease 2019 (COVID-19) pandemic has resulted in large
 scale changes to incorporate telemedicine for delivery of care. People
 with cystic fibrosis (CF) have care considerations that pose challenges to
 telemedicine; they include frequent visits for pulmonary disease
 progression, medication management and evaluation by a multidisciplinary
 team of providers. We share our center’s experience with video visits
 replacing in-person clinic evaluation, using quality improvement
 strategies to create a replicable workflow. Key considerations include
 incorporation of the multidisciplinary team into the visit, limitations of
 remote delivery of care, as well as patient and staff perceptions of this
 care model. Results revealed that video visits were convenient,
 efficacious, and comparable to in-person visits with interest for its
 continued incorporation into the traditional CF care model.
description: The dataset was collected via SurveyMonkey; the respondents were
 de-identified and anonymous.
DOI: 10.5061/dryad.3bk3j9kmg
title: Supplementary materials for the manuscript entitled: Mitochondrial Perspective on Species Identification and Delimitation for troglobitic Cicurina (Arachnida: Araneae: Hahniidae) from Central Texas

description: Central Texas is home to a diverse fauna of endemic species found in the
 karst areas along the Balcones Fault Line, the Edwards Aquifer region, and
 associated springs.  The fauna occurring in Bexar County
 experience especially high anthropogenic pressure due to urban sprawl and
 suburban development in and around San Antonio, one of the largest cities
 in the United States.  Among local fauna are numerous troglobitic
 spider species of the genus Cicurina Menge, 1871 (subgenus Cicurella
 Chamberlin and Ivie, 1940). Many species of this genus are thought to have
 small distributions and are often represented in museums and datasets by
 very few specimens.  Species taxonomy for this group has been
 defined primarily by differences in the reproductive anatomy of adult
 females, which are rare in comparison to the number of immature
 individuals found in the wild.  Prior studies have shown that
 non-morphologically identifiable immature specimens, in conjunction with
 adult morphology, aid in illuminating species distributions through
 incorporation of genetic data.  The phylogenetic assessment of
 the area’s diverse species of Cicurina, which currently includes three
 federally listed species (C. madla Gertsch, 1992, C. vespera Gertsch,
 1992, and C. baronia Gertsch, 1992), can benefit from a statistical
 framework upon which to test species boundaries and identify priority
 areas for further investigations.  The species delimitation
 analyses reported herein provides an updated and expanded understanding of
 currently recognized species relationships and distributions. 
 Statistical support was obtained for many recognized species, but
 hypotheses invalidating some species are also proposed.  In
 addition, detections of potentially undescribed species only known from
 genetics of immature specimens are presented.  Finally,
 significant divergences within federally endangered species were also
 identified, and priorities for future research are suggested.
description: This dataset contains figures, sequence information, and tree
 files obtained from the analyses of COI data for 170 specimens in the cave
 spider genus <em>Cicurina</em> collected in Texas.