cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5126776.v1
title: Supplementary Material for: Incidence and Relevance of Proteinuria in Bevacizumab-Treated Patients: Pooled Analysis from Randomized Controlled Trials

description: <b><i>Background:</i></b> This analysis evaluated the incidence of and risk factors for bevacizumab-related proteinuria and assessed for any associated clinical sequelae, including renal function changes. <b><i>Methods:</i></b> Patient-level adverse event and laboratory data from a pooled safety database were used to characterize alterations in urine protein excretion following interventional therapy ± bevacizumab in 17 randomized trials across multiple tumor types. Severity of renal function change was assessed using changes in serum creatinine concentration from baseline values. Potential predictors of proteinuria and the association between proteinuria and other adverse events were also investigated. <b><i>Results:</i></b> Among 14,548 patients, the incidence of any-grade proteinuria was 8.2% (733/8,917) and 4.6% (257/5,631) in the bevacizumab and control groups, respectively; rates of grade ≥3 proteinuria were 1.4 and 0.2%. Post-baseline proteinuria grade and bevacizumab were associated with increased rates of renal dysfunction. Patients developing proteinuria had an increased rate of any-grade infection but not thromboembolic events. History of diabetes was the only examined risk factor that appeared to have a significant association with proteinuria development. <b><i>Conclusions:</i></b> This analysis confirmed a significant increase in the development of proteinuria during bevacizumab treatment. We also observed an increased rate of renal dysfunction associated with bevacizumab treatment and among subjects with proteinuria, although the dysfunction was generally mild. The development of proteinuria was also associated with a modest increase in risk of infection.
DOI: 10.17632/pcbz53x967
title: Smart Citizen Kit 2.1

description: The Smart Citizen Kit is aimed at providing a low-cost environmental sensor solution non-technical users can quickly deploy. The design developed for the project is a complete reiteration of the Smart Smart Citizen Kit, a piece of hardware for citizen sensing already tested in other projects for more than five years. On this iteration, new sensors had been added, and all the electronic design has been redone from the ground up to improve the data accuracy and reduce the manufacturing costs. The design is built around two boards the Smart Citizen Data Board and the Smart Citizen Urban Sensor Board. The first board contains the data acquisition, power management, and the communication unit. The second contains a set of sensors aimed at the outdoor urban environment including Particulate Matter, Air Temperature, Relative Humidity, Noise Level, Ambient Light and Barometric Pressure. This work is led by IAAC Fab Lab Barcelona team under the framework of iSCAPE (Improving Smart Control of Air Pollution in Europe) project, which is funded by the European Community’s H2020 Programme (H2020-SC5-04-2015) under the Grant Agreement No. 689954. All the authors acknowledge the funding received via the iSCAPE project.
DOI: 10.17632/rvny4rmfpp
title: Cell cycle heterogeneity can generate robust cell type proportioning. Gruenheit et al.

description: Raw and processed data for all figures in Cell cycle heterogeneity can generate robust cell type proportioning (Dev. Cell, Gruenheit et al. 2018). Each Excel spreadsheet contains the data for one figure, different tabs contain data for subfigures. Three additional figures were also added. The word file contains the figure legends also for these additional figures.
DOI: 10.17632/pns8jrrc7h
title: Conditional Correlation Network Data from the Financial Sector

description: This data set contains rolling conditional correlation networks estimated from stock returns and the volume synchronized probability of informed trading. Only the largest 104 financial firms are included for the period of 1996 through 2012. The data was used to analyze banking sector systemic risk.
DOI: 10.17632/trwkxsygmd
title: Data for: Favourable improvement in hematological parameters in response to oral iron and vitamin C combination in a cohort of genetically proven Iron Refractory Iron Deficiency Anemia (IRIDA) cases

description: Data related to a clinical treatment a-pproach in IRIDA cases
DOI: 10.6084/m9.figshare.12980609.v1
title: demo1.csv

description: water level control
DOI: 10.6084/m9.figshare.29148350.v1
title: Recursive generation of substructures using point data

description: The dataset contains generated substructure using POI in China, the pseudo code for the algorithm and python implement of the algorithm. Please send email to jackyjen91@gmail.com for the unzip password.
DOI: 10.6084/m9.figshare.5972038.v1
title: Raw dataset on sheep export from 2004 to 2015 and weather conditions at ports.xlsx

description: Raw dataset on live sheep export from Australia to the Middle East between 2004 and 2015 and weather conditions at departure and destination ports for voyages.<br>
DOI: 10.17632/9k9jccxkb7
title: Data for: Quantile estimation in rainfall frequency analysis with Log-logistic distribution using pivotal quantities: Method, effect, and application

description: The rainfall data involved in the application section.
DOI: 10.17632/np8f797czv
title: Data from a long-term field experiment comparing digested and undigested cow slurry

description: Data from a long-term field experiment in Norway, comparing digested and undigested slurry from organically managed dairy cows since 2011. The dataset includes chemical analyses of digested and non-digested slurry, soil characteristics at plot level of pH, extractable nutrients, loss on ignition; crop yields and botanical composition. These data supplement the findings presented and discussed in the research article Anaerobic digestion of animal manure – long-term effects on crop yields and soil characteristics.
DOI: 10.6084/m9.figshare.19307654.v1
title: Supplementary Material for: <b><i>Streptococcus pneumoniae</i></b> Impairs Maturation of Human Dendritic Cells and Consequent Activation of CD4<sup>+</sup> T Cells via Pneumolysin

description: Influenza A Virus (IAV), <i>Staphylococcus aureus</i> (staphylococci), and <i>Streptococcus pneumoniae</i> (pneumococci) are leading viral and bacterial causes of pneumonia. Dendritic cells (DCs) are present in the lower respiratory tract. They are characterized by low expression of co-stimulatory molecules, including CD80 and CD86 and high capacity of antigen uptake. Subsequently, DCs upregulate co-stimulatory signals and cytokine secretion to effectively induce T-cell priming. Here, we investigated these processes in response to bacterial and viral single as well as coinfections using human monocyte-derived (mo)DCs. Irrespective of single or coinfections, moDCs matured in response to IAV and/or staphylococcal infections, secreted a wide range of cytokines, and activated CD4<sup>+</sup>, CD8<sup>+</sup> as well as double-negative T cells. In contrast, pneumococcal single and coinfections impaired moDC maturation, which was characterized by low expression of CD80 and CD86, downregulated expression of CD40, and a mild cytokine release resulting in abrogated CD4<sup>+</sup> T-cell activation. These actions were attributed to the cholesterol-dependent cytotoxin pneumolysin (Ply). Infections with a <i>ply</i>-deficient mutant resulted in restored moDC maturation and exclusive CD4<sup>+</sup> T-cell activation. These findings show that Ply has important immunomodulatory functions, supporting further investigations in specific modalities of Ply-DC interplay.
DOI: 10.6084/m9.figshare.25718739.v1
title: Table 2. Critical Appraisal- CASP checklist .docx

description: Critical appraisal results of the systematic review
DOI: 10.17632/55rdtrghy2
title: Chinese Mobile Phone(2001.01-2021.03)

description: This dataset is the information on Chinese mobile phones. We collected the data from mobile.zol.com.cn. The mobile phone data includes 21 years (from 2001 to 2021), but in 2021, the data are until the 15th of the Match. The data are not raw data. They are preprocessed.
DOI: 10.17632/6d3sgzmdxp
title: Sphagnum growth in Bakchar mire

description: The data include 8-year measurements of length increment, numerical density, increment and capitulum weight of Sphagnum species (S. fuscum, S. magellanicum, S. angustifolium and S. fallax). The data were obtained in a poor fen and a raised bog in the southern taiga of Western Siberia (56˚51'N, 82˚51'E) in 2013-2020.
DOI: 10.17632/9c47vwvtss
title: Dataset on electrocardiograph, sleep and metabolic function of male type 2 diabetes mellitus

description: This dataset provides a collection of 24-h electrocardiograph (ECG) signals, ECG analysis results, sleep quality assessment and clinical indicators of metabolic function acquired from 60 male type 2 diabetes mellitus (T2DM) inpatients. Upon admission, a fasting blood draw and urinary sample were obtained the next morning for routine glucose, lipid and renal panels. Subjects were also involved in investigation for diabetic complications. On the second day of hospitalization, subjects were monitored in hospital for 24-h ECG starting at 10 pm. Subjective sleep quality was assessed by Pittsburgh Sleep Quality Index (PSQI). Objective sleep quality and sleep staging were assessed by ECG-based cardiopulmonary coupling (CPC) analysis.
DOI: 10.17632/xyxnhv9mkm
title: Data for: Influence of different time horizon-based battery energy management strategies on residential microgrid profitability

description: Matlab .mat files which contain solar irradiation, temperature (mean), EPEX SPOT prices history and simulated load for studied location.
DOI: 10.26180/14676105.v1
title: Jets - Numerical dataset

description: This project aims to investigate the high-speed forced flow associated with the underexpanded impinging jet (UIJ). This flow is a critical component of diverse processes ranging from pharmaceutical systems to novel manufacturing processes, to aerospace propulsion applications. It is our contention that the underexpanded impinging jet flow is an inherently forced flow. This forcing is acoustic in nature, primarily driven via a feedback process that has its origin at the impingement surface.<br>The nature of this “forced” flow is very poorly understood. This lack of understanding persists due to the fact that the typical “steady state” case (i.e. the only one readily amenable to observation), has its own inbuilt forcing mechanism, in the form of the aforementioned acoustic feedback process. This inherent self-forcing means that the underlying “natural” stability of the jet cannot be directly inferred from the mean state of this “forced” flow. The lack of fundamental understanding regarding the nature and stability characteristics of the UIJ makes prediction of these flows nearly impossible. Without predictive ability, dynamic control of the flow in its many diverse industrial applications is highly unreliable.<br>High fidelity large eddy simulations (LES) to allow for an in-depth investigation into the nature and dynamical response characteristics of UIJ flows are performed. <br>The datasets of large-eddy simulation of under-expanded supersonic impinging jets funded by the Australian Research Council are stored on this storage allocation
DOI: 10.6084/m9.figshare.1312895.v1
title: Data - Altered Resting-State Functional Connectivity of the Frontal-Striatal Reward System in Social Anxiety Disorder

description: Behavioral and fMRI data
DOI: 10.6084/m9.figshare.14485419.v2
title: Pumas (Puma concolor) as ecological brokers.xlsx

description: We reviewed the published literature to address the question of what role puma (Puma concolor) plays within the diverse set of ecosystems it inhabits across the western hemisphere. We searched the ISI Web of Science databases and Google Scholar for keywords (page 1) associated with puma species interactions and their ecological roles and found 162 studies published between 1950-2020. These studies reported evidence of 542 distinct ecological interactions between pumas and other biota, across 484 distinct species.
DOI: 10.6084/m9.figshare.25449808.v1
title: Cambodia Disposal Sites v.1

description: Disposal sites are also known as open dumping and landfills, and they include all areas referred to as the final disposal in Cambodia. This data shows the final results of disposal site detection by a Sentinel-2P image trained for a machine learning model (random forest and convolutional neural network) with the epoch training by 100 iteration.
DOI: 10.6084/m9.figshare.26121730.v1
title: Amylin Dia Figure Cohorts JW 9.14.22.xlsxamylin diarrhea study cohorts and mouse IDs

description: Data set of mice
DOI: 10.6084/m9.figshare.28639451.v3
title: SPSS Data: Physicochemical properties of<i> </i>double pipe distillation (E) and traditional distillation (C) <i>areke</i> samples.

description: Physicochemical properties of<i> </i>double pipe distillation(E) and traditional distillation (C) <i>areke</i> samples.
DOI: 10.6084/m9.figshare.28828808.v1
title: Año Sabático

description: Estos archivos dan soporte al proyecto de año sabático.
DOI: 10.6084/m9.figshare.9599750.v1
title: Additional file 7: of Transcriptomic analysis reveals the mechanism of thermosensitive genic male sterility (TGMS) of Brassica napus under the high temperature inducement

description: Table S6. Differentially expressed genes putatively involved in TGMS of B. napus. (XLS 36 kb)
DOI: 10.17632/7dz2vbygjr
title: Возможности ультразвуковой оценки коллабируемости нижней полой вены через новое акустическое окно у добровольцев в прон-позиции

description: АКТУАЛЬНОСТЬ: Ультразвуковая оценка коллабирования нижней полой вены (НПВ) используется в клинической практике для оценки волемического статуса пациентов. Нахождение исследуемого в прон-позиции ограничивает возможность оценки коллабирования НПВ традиционным методом, что требует использования альтернативных методов. ЦЕЛЬ ИССЛЕДОВАНИЯ: Проведение сравнительной оценки индекса коллабирования НПВ у здоровых добровольцев в положении на спине и в прон-позиции с использованием нового акустического окна. МАТЕРИАЛЫ И МЕТОДЫ: Ультразвуковое наблюдение проведено у 25 взрослых здоровых добровольцев обоего пола. Измерение НПВ проводили последовательно в положении добровольцев на спине и животе. Рассчитывали среднее значение и стандартное отклонение максимального и минимального размера НПВ. Полученные при расчетах значения индекса коллабирования вены представлены медианой (Me) и интеркавартильным размахом (Q1-Q3). Непараметрический критерий Уилкоксона выбран для сравнительного анализа (уровень значимости р=0,05). РЕЗУЛЬТАТЫ: В ходе проведенных измерений диаметра нижней полой вены были получены следующие результаты: среднее значение максимального и минимального размера вены у добровольцев в положении на спине составили 1,58±0,37 см и 1,30±0,36 см соответственно; в положение на животе 1,51±0,37 см и 1,24±0,36 см соответственно. Значения Me (Q1-Q3) индекса коллабирования НПВ (%) у добровольцев в положении на спине и в прон-позиции составили 16,84 (8,86-24,39) и 15,63 (10,23-24,77) соответственно. При анализе полученных данных не было выявлено статистических различий между величинами индекса коллабирования НПВ (р=0,861). ВЫВОДЫ: Отсутствие статистически значимой разницы значений индекса коллабирования НПВ у добровольцев в положении лежа на спине и на животе демонстрирует возможность использования нового акустического окна для оценки волемического статуса в клинических условиях у пациентов в прон-позиции.
DOI: 10.17632/9gthjhnph7
title: lymphedema data

description: lymphdema
DOI: 10.17632/mfggb6ktz5
title: Vaccine hesitancy and media

description: Data for vaccine hesitancy & media paper.
DOI: 10.6084/m9.figshare.14773578.v1
title: Planting area and grain yield of rice in the Hunan-Jiangxi region and rice production in China during 2005-2019

description: Planting area and grain yield of rice in the Hunan-Jiangxi region and rice production in China during 2005-2019
DOI: 10.6084/m9.figshare.20416581.v1
title: Factors associated with the very high caesarean section rate in urban areas of Vietnam

description: delcae: mode of delivery (1=caesarean section, 0=vaginal birth) motage: mother's age (year) moteducodthree: mother's education level (Primary & Secondary =2, High school/ Intermediate degree=3, University/ Postgraduate=4) faminc: family income motaddoneurb: place of residence (1=urban, 0=rural) motchilcodtwo: parity prepro: prenancy problem bmi: pre-pregnancy body max index weight gain: gestational weight gain delpripub: place of birth (1=private, 0=public) babsex: baby's sex (1=male, 0=female) babweibir: baby's birth weight
DOI: 10.6084/m9.figshare.3507536.v1
title: An approximate maximum likelihood phylogenetic tree of sequenced streptomycetes.

description: This is the phylogenetic tree (in Nerwick format) described in the following manuscript submitted to Chemical Science:<br>Formicamycins, antibacterial polyketides produced by <i>Streptomyces formicae </i>isolated from African <i>Tetraponera</i> plant-ants<br>Zhiwei Qin<sup>1</sup>, John T Munnoch<sup>2</sup>, Rebecca Devine<sup>2</sup>, Neil A Holmes<sup>2</sup>, Ryan F Seipke<sup>3</sup>, Barrie Wilkinson<sup>1</sup>* and Matthew I Hutchings<sup>2</sup>*<br><sup>1</sup>Department of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7TJ, United Kingdom.<br><sup>2</sup>School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, United Kingdom. <br><sup>3</sup>School of Molecular and Cellular Biology, Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom.<br>*Contact: m.hutchings@uea.ac.uk or @matthutchings10 and barrie.wilkinson@jic.ac.uk <br><b>ESI Figure 4.</b> An approximate maximum likelihood phylogenetic tree of sequenced streptomycetes. A phylogeny was inferred for <i>Mycobacterium tuberculosis</i> and 573 sequenced streptomycetes based on concatenated partial sequences for <i>atpD-rpoB</i>. FastTree local support values are indicated at each node.
DOI: 10.6084/m9.figshare.5101132.v4
title: Cupressus sempervirens chorology

description: Distribution map of Mediterranean cypress (<i>Cupressus semperviren</i>s)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.17632/d44rcys5jf
title: Numerical Simulation of Barchans interacting with dune-size obstacles

description: The dataset consists of the setup to reproduce a simulation of a subaqueous barchan interacting with an obstacle. The simulation was carried out using the open-source free CFDEM software, which couples the open-source CFD code OpenFOAM with the open-source DEM code LIGGGHTS. The dataset contains a complete example of a by-pass case. Additionally, we share all Octave codes used for post-processing the results.
DOI: 10.17632/s3gk8cbj39
title: Political Ideology and International Capital Allocation

description: Replication code, data, and description for "Political Ideology and International Capital Allocation," accepted at the Journal of Financial Economics.
DOI: 10.17632/ym4pzzfj3p
title: [Dataset] Self Perception Scale Indonesia

description: This study aims to adapt the self personal scale as an instrument of intrapersonal peacefulness to the Indonesian language. The study was conducted on 1552 adolescents (983 boys and 569 girls), aged between 12 and 25 in Indonesia. The results of confirmatory factor analysis obtained 12 adequate items showing a saturation factor ranging from 0.468 to 0.780. Measurement model fit (p &lt; 0.01, TLI = 0.946, CFI = 0.956, RMSEA = 0.06, SRMR = 0.036.). Construct reliability on SPS-I is 0.865.
DOI: 10.6084/m9.figshare.27612663.v1
title: crop.csv

description: Dataset for CROP
DOI: 10.6084/m9.figshare.5812704.v1
title: Human RNA-seq ratio data before and after hypoxic stress

description: RNA-seq reads were processed using RSEM after the adapter trimming by Trim Galore! (version 0.4.1), which is a wrapper script to automate quality and adapter trimming as well as quality control (https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/). As a reference mapping tool, Bowtie2 (version 2.3.2) was used from RSEM (version1.2.31) following a short tutorial (https://github.com/bli25ucb/RSEM_tutorial).
DOI: 10.6084/m9.figshare.7629263.v1
title: Supplementary Tables: Differentially expressed genes in Six2TGC ;miR-17~92 fl/fl nephron progenitors.

description: Analysis of RNA-seq data for differentially expressed genes in Six2-TGC; miR-17~92 fl/fl nephron progenitors and unbiased pathway analysis with Toppfun.
DOI: 10.17632/wztc26vh7b
title: A semi-implicit slip algorithm for mesh deformation in complex geometries, implemented in OpenFOAM

description: Many engineering applications of computational fluid dynamics (CFD) comprise extensive movement of objects that necessitate complex dynamic mesh treatments. In particular, the mesh motion process frequently requires a proper slipping of mesh points on highly curved surfaces. The currently available implementation of explicit slip boundary conditions in OpenFOAM fails to allow large deformations of the mesh without severely degrading the mesh quality and inverting some of the cells. Thus, a robust semi-implicit slip algorithm, based on the Laplacian smoothing methodology, is developed in the present work to tackle this issue. The algorithm is in fact performed in two steps, one explicit and one implicit. The OpenFOAM implementation of the algorithm includes different mesh motion solvers and boundary conditions, based on the displacement or velocity of points. The method is first verified using simple, yet relevant, test cases, and it is shown that the developed algorithm significantly outperforms some of the well-known proprietary CFD codes. Then, it is applied to a complex practical CFD case study. An engineering application that requires the features of the developed mesh motion algorithm is the transient operation of Kaplan turbines. These double-regulated machines simultaneously adjust the guide vane and runner blade angles while changing the operating condition. CFD simulations of such transient operations are highly complex, as they involve mesh deformation of the guide vane passage and simultaneous mesh deformation and rigid-body rotation of the runner blade passage. The mesh deformation requires points to slip on the curved hub and shroud surfaces while preserving the cell quality in tiny blade clearances. Therefore, the feasibility of the developed algorithm is evaluated for a load rejection sequence of a Kaplan turbine model.