cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p63q0
title: Data from: Free-ranging dogs prefer petting over food in repeated interactions with unfamiliar humans

description: Dogs (Canis lupus familiaris) are the first species to have been
 domesticated, and unlike other domesticated species, they have developed a
 special bonding with their owners. The ability to respond to human
 gestures and language, and the hypersocial behaviours of dogs are
 considered key factors that have led them to become man's best
 friend. Free-ranging dogs provide an excellent model system for
 understanding the dog-human relationship in various social contexts. In
 India, free-ranging dogs occur in all possible human habitations. They
 scavenge among garbage, beg for food from humans, give birth in dens close
 to human habitations, and establish social bonds with people. However,
 there is ample dog-human conflict on the streets, leading to morbidity and
 mortality of dogs. Hence the ability to assess an unfamiliar human before
 establishing physical contact could be adaptive for dogs especially in the
 urban environment. We tested a total of 103 adult free-ranging dogs to
 investigate their response to immediate social and long-term food and
 social rewards. The dogs were provided a choice of obtaining a food reward
 either from the experimenter's hand or the ground. The dogs avoided
 making physical contact with the unfamiliar human. While immediate social
 reward was not effective in changing this response, the long-term test
 showed a strong effect of the social contact on the dogs' response.
 Our results revealed that these dogs tend to build trust based on
 affection, and not food rewards. The study provides significant insights
 into the dynamics of dog-human interactions on the streets and subsequent
 changes in behaviours of dogs through the process of learning.
description: Bhattacharjee et
 al_JEB_Raw data_ControlRaw data for the control
 for one time exposureBhattacharjee et
 al_JEB_Raw data_Additional food rewardBhattacharjee et
 al_JEB_Raw data_Social food rewardBhattacharjee et
 al_JEB_Raw data_TestRaw data for the one
 time test
DOI: 10.34810/data1898
title: Replication Data for: "Strain in Halide Perovskites and Solar Cell Stability: Accelerated Stress Tests under Bias Voltage".

description: The lifespan of halide perovskite solar cells (PSCs) is currently a major concern for the implementation and commercialization of the technology. Tensile and compressive strain alters the halide perovskite (HP) lattice under operando conditions, affecting PSC stability. However, the mechanisms governing strain responses are still unknown. In this work, we monitored the evolution of strain in PSCs during accelerated stability tests under continuous light irradiation and bias-voltage. Additive engineering led to the compression of the HP lattice improved PSC stability. The temporal evolution of the HP lattice, together with the electrical response of devices employing modified and reference HP, were tracked by in-situ X-ray diffraction, photoluminescence, and quasi in-situ electrochemical impedance spectroscopy. Our results demonstrate a good correlation between lattice expansion (strain) with the device’s current decay and stability. Additionally, and contrary to current understanding, we observed that lattice compression in HP was not sufficient to ensure protection against degradation.
description: The lifespan of halide perovskite solar cells (PSCs) is currently a major concern for the implementation and commercialization of the technology. Tensile and compressive strain alters the halide perovskite (HP) lattice under operando conditions, affecting PSC stability. However, the mechanisms governing strain responses are still unknown. In this work, we monitored the evolution of strain in PSCs during accelerated stability tests under continuous light irradiation and bias-voltage. Additive engineering led to the compression of the HP lattice improved PSC stability. The temporal evolution of the HP lattice, together with the electrical response of devices employing modified and reference HP, were tracked by in-situ X-ray diffraction, photoluminescence, and quasi in-situ electrochemical impedance spectroscopy. Our results demonstrate a good correlation between lattice expansion (strain) with the device’s current decay and stability. Additionally, and contrary to current understanding, we observed that lattice compression in HP was not sufficient to ensure protection against degradation.
DOI: 10.5061/dryad.t68v8
title: Data from: Occupancy models for data with false positive and false negative errors and heterogeneity across sites and surveys

description: False positive detections, such as species misidentifications, occur in
 ecological data, although many models do not account for them.
 Consequently, these models are expected to generate biased inference. The
 main challenge in an analysis of data with false positives is to
 distinguish false positive and false negative processes while modeling
 realistic levels of heterogeneity in occupancy and detection probabilities
 without restrictive assumptions about parameter spaces. Building on
 previous attempts to account for false positive and false negative
 detections in occupancy models, we present hierarchical Bayesian models
 that utilize a subset of data with either confirmed detections of a
 species’ presence (CP model) or both confirmed presences and confirmed
 absences (CACP model). We demonstrate that our models overcome the
 challenges associated with false positive data by evaluating model
 performance in Monte Carlo simulations of a variety of scenarios. Our
 models also have the ability to improve inference by incorporating
 previous knowledge through informative priors. We describe an example
 application of the CP model to quantify the relationship between songbird
 occupancy and residential development, plus we provide instructions for
 ecologists to use the CACP and CP models in their own research. Monte
 Carlo simulation results indicated that, when data contained false
 positive detections, the CACP and CP models generated more accurate and
 precise posterior probability distributions than a model that assumed data
 did not have false positive errors. For the scenarios we expect to be most
 generally applicable, those with heterogeneity in occupancy and detection,
 the CACP and CP models generated essentially unbiased posterior occupancy
 probabilities. The CACP model with vague priors generated unbiased
 posterior distributions for covariate coefficients. The CP model generated
 unbiased posterior distributions for covariate coefficients with vague or
 informative priors, depending on the function relating covariates to
 occupancy probabilities. We conclude that the CACP and CP models generate
 accurate inference in situations with false positive data for which
 previous models were not suitable.
description: Point count
 dataMergeBirdSiteData-Final.csv
DOI: 10.5061/dryad.p3r38
title: Data from: Sperm competition suppresses gene drive among experimentally evolving populations of house mice

description: Drive genes are genetic elements that manipulate the 50% ratio of
 Mendelian inheritance in their own favour, allowing them to rapidly
 propagate through populations. The action of drive genes is often hidden,
 making detection and identification inherently difficult. Yet drive genes
 can have profound evolutionary consequences for the populations that
 harbour them: most known drivers are detrimental to organismal gamete
 development, reproduction and survival. In this study, we identified the
 presence of a well-known drive gene called t haplotype post-hoc in eight
 replicate selection lines of house mice that had been evolving under
 enforced monandry or polyandry for 20 generations. Previous work on these
 selection lines reported an increase in sperm competitive ability in males
 evolving under polyandry. Here, we show that this evolutionary response
 can be partly attributed to gene drive. We demonstrate that drive-carrying
 males are substantially compromised in their sperm competitive ability. As
 a consequence, we found that t frequencies declined significantly in the
 polyandrous lines while remaining at stable, high levels in the monandrous
 lines. For the first time in a vertebrate, we thus provide direct
 experimental evidence that the mating system of a species can have
 important repercussions on the spread of drive genes over evolutionary
 relevant time scales. Moreover, our work highlights how the covert action
 of drive genes can have major, potentially unintended impact on our study
 systems.
description: Sperm Competition
 ExperimentOutcome of Sperm
 Competition Trials – Column descriptions – mother_ID (categorical):
 Identity of the mother – father1_ID (categorical): Identity of the father
 from the polyandrous line – father2_ID (categorical): Identity of the
 father from the polyandrous line – order (numerical): Mating order
 position of the first male (father1) – litterSize (numerical): Number of
 offspring produced – mother_Genotype (categorical): t genotype of the
 mother – father1_Genotype (categorical): t genotype of father1 –
 father2_Genotype (categorical): t genotype of father2 – father1_Share
 (numerical): Paternity share of father1 – father2_Share (numerical):
 Paternity share of father2 – father1_tsired (numerical): Number t
 genotypes among the offspring sired by Father1 – father2_tsired
 (numerical): Number t genotypes among the offspring sired by
 Father2SpermCompData.txtt Frequencies in the Selection Linest Genotypes of individuals from the 8 selection lines from generations 0, 12,16, and 19 – Column descriptions – ID (categorical): Identity of the animal – Genotype (categorical): Genotype of the animal – SelectionTreatment (categorical): The selection regime with M for monandrous and P for polyandrous – Line (categorical): Selection line number (1–4 per treatment) – Generation (numerical): Generation number of the animalSelectionLineData.txt
DOI: 10.5061/dryad.n78s4
title: Data from: Reproductive character displacement of female, but not male song discrimination in an avian hybrid zone

description: Divergence of male sexual signals and female preferences for those signals
 often maintains reproductive boundaries between closely related,
 co-occurring species. However, contrasting sources of selection, such as
 interspecific competition, can lead to weak divergence or even convergence
 of sexual signals in sympatry. When signals converge, assortative mating
 can be maintained if the mating preferences of females diverge in sympatry
 (reproductive character displacement; RCD), but there are few explicit
 examples. Pied flycatchers (Ficedula hypoleuca) are sympatric with
 collared flycatchers (F. albicollis) on the Baltic island of Öland, where
 males from both species compete over nestboxes, their songs converge, and
 the two species occasionally hybridize. We compare song discrimination of
 male and female pied flycatchers on Öland and in an allopatric population
 on the Swedish mainland. Using field choice trials, we show that male pied
 flycatchers respond similarly to the songs of both species in sympatry and
 in allopatry, while female pied flycatchers express stronger
 discrimination against heterospecific songs in sympatry than in allopatry.
 These results are consistent with RCD of song discrimination of female
 pied flycatchers where they co-occur with collared flycatchers, which
 should maintain species assortative mating despite convergence of male
 sexual signals.
description: Count behavioral data
 from videosCSV file giving details
 of paired camera trap song playback experiment, supporting the main
 results of the paper. Behavioral count measurements are given in columns
 M-Q. Numbers are numbers of videos (counts) in which the individual was
 observed performing a given behavior. "Top" means perching on
 top of the nestbox, "Look.in" means perching at the nestbox
 opening and looking inside, "Enter" means entering the nestbox,
 "Attack" means hitting the wooden dummy flycatcher with the
 beak, and "Video.Count" gives the total number of videos in
 which the individual was observed.Evolution Paper
 Data.csv
DOI: 10.5061/dryad.m3v72
title: Data from: Variation in salivary and pancreatic alpha-amylase genes in Italian horse breeds

description: The dietary demand of the modern horse relies on high-cereal feeding and
 limited forage compared with natural grazing conditions, predisposing the
 horse to several important diseases. Salivary and pancreatic
 alpha-amylases (coded by AMY1 and AMY2 genes, respectively) play a crucial
 role in carbohydrate digestion in nonruminants, but little is known about
 these 2 genes in the horse. Aim of this work has been to distinguish
 genomic sequences of horse AMY1 and AMY2 genes and to analyze any
 polymorphisms in breeds historically characterized by marked differences
 in nutritional management. A single nucleotide polymorphism detection was
 performed and 7 novel single nucleotide polymorphisms were found. Three
 single nucleotide polymorphisms are in exons and were genotyped in 112
 horses belonging to 6 breeds. One single nucleotide polymorphism in AMY1
 gene distinguished Haflinger and the Italian native Murgese from the other
 breeds, whereas both the single nucleotide polymorphisms in AMY2 gene
 showed different allelic frequencies in Friesian compared with the other
 breeds. These differences are confirmed by quite high fixation index (Fst)
 values for these 2 nonsynonymous single nucleotide polymorphisms. These
 preliminary results highlight marked divergences in allele frequencies of
 AMY1 and AMY2 genes, involved in starch digestion, between horse breeds
 characterized by different histories of selection, thus providing first
 indications of possible relations between genetics and nutritional
 management.
description: SNP_GenotypingGenotyping at 3 SNPs found in AMY1 and AMY2 genes, on 112 horses sampled in Italy and belonging to different breeds.SNP_genotyping.xlsx
DOI: 10.5061/dryad.hc8k0
title: Data from: Reasons for low uptake of referrals to ear and hearing services for children in Malawi

description: Background: Early detection and appropriate intervention for children with
 hearing impairment is important for maximizing functioning and quality of
 life. The lack of ear and hearing services in low income countries is a
 significant challenge, however, evidence suggests that even where such
 services are available, and children are referred to them, uptake is low.
 The aim of this study was to assess uptake of and barriers to referrals to
 ear and hearing services for children in Thyolo District, Malawi. Methods:
 This was a mixed methods study. A survey was conducted with 170 caregivers
 of children who were referred for ear and hearing services during
 community-based screening camps to assess whether they had attended their
 referral and reasons for non-attendance. Semi-structured interviews were
 conducted with 23 caregivers of children who did not take up their
 referral to explore in-depth the reasons for non-uptake. In addition, 15
 stakeholders were interviewed. Thematic analysis of the interview data was
 conducted and emerging trends were analysed. Results: Referral uptake was
 very low with only 5 out of 150 (3%) children attending. Seven main
 interacting themes for non-uptake of referral were identified in the
 semi-structured interviews: location of the hospital, lack of transport,
 other indirect costs of seeking care, fear and uncertainty about the
 referral hospital, procedural problems within the camps, awareness and
 understanding of hearing loss, and lack of visibility and availability of
 services. Conclusion: This study has highlighted a range of interacting
 challenges faced by families in accessing ear and hearing services in this
 setting. Understanding these context specific barriers to non-uptake of
 ear and hearing services is important for designing appropriate
 interventions to increase uptake.
description: Copy of
 DatabasePaperV2
DOI: 10.5061/dryad.1182k
title: Data from: Phenotypic interactions between tree hosts and invasive forest pathogens in the light of globalization and climate change

description: Invasive pathogens can cause considerable damage to forest ecosystems.
 Lack of coevolution is generally thought to enable invasive pathogens to
 bypass the defence and/or recognition systems in the host. Although mostly
 true, this argument fails to predict intermittent outcomes in space and
 time, underlining the need to include the roles of the environment and the
 phenotype in host–pathogen interactions when predicting disease impacts.
 We emphasize the need to consider host–tree imbalances from a phenotypic
 perspective, considering the lack of coevolutionary and evolutionary
 history with the pathogen and the environment, respectively. We describe
 how phenotypic plasticity and plastic responses to environmental shifts
 may become maladaptive when hosts are faced with novel pathogens. The lack
 of host–pathogen and environmental coevolution are aligned with two global
 processes currently driving forest damage: globalization and climate
 change, respectively. We suggest that globalization and climate change act
 synergistically, increasing the chances of both genotypic and phenotypic
 imbalances. Short moves on the same continent are more likely to be in
 balance than if the move is from another part of the world. We use
 Gremmeniella abietina outbreaks in Sweden to exemplify how host–pathogen
 phenotypic interactions can help to predict the impacts of specific
 invasive and emergent diseases. This article is part of the themed issue
 ‘Tackling emerging fungal threats to animal health, food security and
 ecosystem resilience’.
description: Weather and Gremmeiella
 in SwedenWeather and Gremmeniella
 1860-2014.xlsx
DOI: 10.15468/dl.h3hcer
title: Occurrence Download

description: A dataset containing 591639 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-20 -38,55 -38,55 38,-20 38,-20 -38))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 591639 records from 288 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001305-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.rb590
title: Data from: Linking phenological shifts to species interactions through size-mediated priority effects

description: 1. Inter-annual variation in seasonal weather patterns causes shifts in
 the relative timing of phenological events of species within communities,
 but we currently lack a mechanistic understanding of how these
 phenological shifts affect species interactions. Identifying these
 mechanisms is critical to predicting how inter-annual variation affects
 populations and communities. 2. Species’ phenologies, particularly the
 timing of offspring arrival, play an important role in the annual cycles
 of community assembly. We hypothesize that shifts in relative arrival of
 offspring can alter interspecific interactions through a mechanism called
 size-mediated priority effects (SMPE), in which individuals that arrive
 earlier can grow to achieve a body size advantage over those that arrive
 later. 3. In this study, we used an experimental approach to isolate and
 quantify the importance of SMPE for species interactions. Specifically, we
 simulated shifts in relative arrival of the nymphs of two dragonfly
 species to determine the consequences for their interactions as intraguild
 predators. 4. We found that shifts in relative arrival altered not only
 predation strength but also the nature of predator-prey interactions. When
 arrival differences were great, SMPE allowed the early arriver to prey
 intensely upon the late arriver, causing exclusion of the late arriver
 from nearly all habitats. As arrival differences decreased, the early
 arriver’s size advantage also decreased. When arrival differences were
 smallest, there was mutual predation, and the two species coexisted in
 similar abundances across habitats. Importantly, we also found a nonlinear
 scaling relationship between shifts in relative arrival and predation
 strength. Specifically, small shifts in relative arrival caused large
 changes in predation strength while subsequent changes had relatively
 minor effects. 5. These results demonstrate that SMPE can alter not only
 the outcome of interactions but also the demographic rates of species and
 the structure of communities. Elucidating the mechanisms that link
 phenological shifts to species interactions is crucial for understanding
 the dynamics of seasonal communities as well as for predicting the effects
 of climate change on these communities.
description: Laboratory experiment
 dataRasmussen et al Journal
 of Animal Ecology 2014 included a laboratory experiment that examined
 size-based intraguild predation between the nymphs of two dragonfly
 species, Tramea carolina and Pantala flavescens. We added to each
 container one nymph of each species in 48 size combinations. At seven
 points during the experiment, we recorded whether a predation event had
 occurred. The experiment was ended after 72 hours.Rasmussen_et_al_2014_LabExperimentData.csvMesocosm experiment dataRasmussen_et_al_2014_MesocosmExperimentData.csv
DOI: 10.5061/dryad.bq858
title: Data from: Inferences of evolutionary history of a widely distributed mangrove species, Bruguiera gymnorrhiza, in the Indo-West Pacific region

description: Inference of genetic structure and demographic history is fundamental
 issue in evolutionary biology. We examined the levels and patterns of
 genetic variation of a widespread mangrove species in the Indo-West
 Pacific region, Bruguiera gymnorrhiza, using ten nuclear gene regions.
 Genetic variation of individual populations covering its distribution
 range was low, but as the entire species it was comparable to other plant
 species. Genetic differentiation among the investigated populations was
 high. They could be divided into two genetic clusters: the West and East
 clusters of the Malay Peninsula. Our results indicated that these two
 genetic clusters derived from their ancestral population whose effective
 size of which was much larger compared to the two extant clusters. The
 point estimate of speciation time between B. gymnorrhiza and Bruguiera
 sexangula was two times older than that of divergence time between the two
 clusters. Migration from the West cluster to the East cluster was much
 higher than the opposite direction but both estimated migration rates were
 low. The past Sundaland and/or the present Malay Peninsula are likely to
 prevent gene flow between the West and East clusters and function as a
 geographical or land barrier.
description: STRUCTURE_inputIMa2_BG_K2IMa2_BSvsBG_IS-HKY