cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12981998.v1
title: plot_ce10.rds

description: plot_ce10 for comparison
DOI: 10.5281/zenodo.3885450
title: Reinvestigating the Photoprotection Properties of a Mycosporine Amino Acid Motif

description: With the growing concern regarding commercially available ultraviolet (UV) filters damaging the environment, there is an urgent need to discover new UV filters. A family of molecules called mycosporines and mycosporine-like amino acids (referred to as MAAs collectively) are synthesized by cyanobacteria, fungi and algae and act as the natural UV filters for these organisms. Mycosporines are formed of a cyclohexenone core structure while mycosporine-like amino acids are formed of a cyclohexenimine core structure. To better understand the photoprotection properties of MAAs, we implement a bottom-up approach by first studying a simple analog of an MAA, 3-aminocyclohex-2-en-1-one (ACyO). Previous experimental studies on ACyO using transient electronic absorption spectroscopy (TEAS) suggest that upon photoexcitation, ACyO becomes trapped in the minimum of an S1 state, which persists for extended time delays (&gt;2.5 ns). However, these studies were unable to establish the extent of electronic ground state recovery of ACyO within 2.5 ns due to experimental constraints. In the present studies, we have implemented transient vibrational absorption spectroscopy (as well as complementary TEAS) with Fourier transform infrared spectroscopy and density functional theory to establish the extent of electronic ground state recovery of ACyO within this time window. We show that by 1.8 ns, there is &gt;75% electronic ground state recovery of ACyO, with the remaining percentage likely persisting in the electronic excited state. Long-term irradiation studies on ACyO have shown that a small percentage degrades after 2 h of irradiation, plausibly due to some of the aforementioned trapped ACyO going on to form a photoproduct. Collectively, these studies imply that a base building block of MAAs already displays characteristics of an effective UV filter.
DOI: 10.5281/zenodo.3885449
title: Reinvestigating the Photoprotection Properties of a Mycosporine Amino Acid Motif

description: With the growing concern regarding commercially available ultraviolet (UV) filters damaging the environment, there is an urgent need to discover new UV filters. A family of molecules called mycosporines and mycosporine-like amino acids (referred to as MAAs collectively) are synthesized by cyanobacteria, fungi and algae and act as the natural UV filters for these organisms. Mycosporines are formed of a cyclohexenone core structure while mycosporine-like amino acids are formed of a cyclohexenimine core structure. To better understand the photoprotection properties of MAAs, we implement a bottom-up approach by first studying a simple analog of an MAA, 3-aminocyclohex-2-en-1-one (ACyO). Previous experimental studies on ACyO using transient electronic absorption spectroscopy (TEAS) suggest that upon photoexcitation, ACyO becomes trapped in the minimum of an S1 state, which persists for extended time delays (&gt;2.5 ns). However, these studies were unable to establish the extent of electronic ground state recovery of ACyO within 2.5 ns due to experimental constraints. In the present studies, we have implemented transient vibrational absorption spectroscopy (as well as complementary TEAS) with Fourier transform infrared spectroscopy and density functional theory to establish the extent of electronic ground state recovery of ACyO within this time window. We show that by 1.8 ns, there is &gt;75% electronic ground state recovery of ACyO, with the remaining percentage likely persisting in the electronic excited state. Long-term irradiation studies on ACyO have shown that a small percentage degrades after 2 h of irradiation, plausibly due to some of the aforementioned trapped ACyO going on to form a photoproduct. Collectively, these studies imply that a base building block of MAAs already displays characteristics of an effective UV filter.
DOI: 10.6084/m9.figshare.12982004
title: plot_sacCer3.rds

description: plot_sacCer3 for comparison
DOI: 10.6084/m9.figshare.12982004.v2
title: plot_sacCer3.rds

description: plot_sacCer3 for comparison
DOI: 10.6084/m9.figshare.12982004.v1
title: plot_sacCer3.rds

description: plot_sacCer3 for comparison
DOI: 10.6084/m9.figshare.12770177
title: Aerial Surveying Routing dataset

description: Dataset for aerial surveying routing problem. Consists of 11 base stations, 10 types of aircraft and 12 tasks that need to be visited. Each aircraft type has cruise speed, range and cost per hour specified.<i>TaskToTask</i>, <i>BaseToTask </i>and <i>BaseToBase </i>tables provide the distances in miles between two edges in the graph.<i>AircraftsAvailable </i>table provides information on how many aircraft are available at each base for the given aircraft type.Due to the size or type of the aircraft, not all base stations can support all aircraft types safely, so additional aircraft type constraints are applied for each base station - <i>AircraftBaseConstraints</i>.
DOI: 10.6084/m9.figshare.12770177.v2
title: ASP.xlsx

description: Dataset for aerial surveying routing problem. Consists of 11 base stations, 10 types of aircraft and 12 tasks that need to be visited. Each aircraft type has cruise speed, range and cost per hour specified.<i>TaskToTask</i>, <i>BaseToTask </i>and <i>BaseToBase </i>tables provide the distances in miles between two edges in the graph.<i>AircraftsAvailable </i>table provides information on how many aircraft are available at each base for the given aircraft type.Due to the size or type of the aircraft, not all base stations can support all aircraft types safely, so additional aircraft type constraints are applied for each base station - <i>AircraftBaseConstraints</i>.
DOI: 10.6084/m9.figshare.13020722
title: Phenology and morphometry of savanna tree species

description: The data refers to a submitted manuscript "A conceptual model for planning the sustainable use of non-timber forest products in the South American Savanna: a study case in a local settlement" Authors: Marccella Lopes Berte, Cananda Braga Quirino, Renata Dias Françoso.<br>Phenological and morphometrical data of three tree species of Cerrado, the largest South American savanna. The data was collected from 2017 August to 2018 July. Also includes the codes used in the analyses.<br>Study area:Cerrado sensu stricto physiognomy in the Pequeno William Settlement, Planaltina, Distrito Federal, Brasil. Latitude -15.678672°; Longitude -47.706269° <br>The species are listed bellow:Annona crassiflora (Annonaceae)Caryocar brasiliense (Caryocaraceae)Eugenia dysenterica (Myrtaceae)
DOI: 10.6084/m9.figshare.13020722.v2
title: Phenology and morphometry of savanna tree species

description: The data refers to a submitted manuscript "A conceptual model for planning the sustainable use of non-timber forest products in the South American Savanna: a study case in a local settlement" Authors: Marccella Lopes Berte, Cananda Braga Quirino, Renata Dias Françoso.<br>Phenological and morphometrical data of three tree species of Cerrado, the largest South American savanna. The data was collected from 2017 August to 2018 July. Also includes the codes used in the analyses.<br>Study area:Cerrado sensu stricto physiognomy in the Pequeno William Settlement, Planaltina, Distrito Federal, Brasil. Latitude -15.678672°; Longitude -47.706269° <br>The species are listed bellow:Annona crassiflora (Annonaceae)Caryocar brasiliense (Caryocaraceae)Eugenia dysenterica (Myrtaceae)
DOI: 10.6084/m9.figshare.13020722.v1
title: Phenology and morphometry

description: Phenological and morphometrical data of three tree species of Cerrado, the largest South American savanna. The data was collected from 2017 August to 2018 July. Study area:Cerrado sensu stricto physiognomy in the Pequeno William Settlement, Planaltina, Distrito Federal, Brasil. Latitude -15.678672°; Longitude -47.706269° <br>The species are listed bellow:Annona crassiflora (Annonaceae)Caryocar brasiliense (Caryocaraceae)Eugenia dysenterica (Myrtaceae)
DOI: 10.25386/genetics.12890870
title: Supplemental Material for De et al., 2020

description: Supplemental table contains the Polycomb domain coordinates and boundary type.
DOI: 10.25386/genetics.12890870.v2
title: Supplemental Material for De et al., 2020

description: Supplemental table contains the Polycomb domain coordinates and boundary type.
DOI: 10.25386/genetics.12890870.v1
title: Supplemental Material for De et al., 2020

description: Supplemental table contains the Polycomb domain coordinates and boundary type.
DOI: 10.21227/y76a-f326
title: Model2

description: Second model submitted
DOI: 10.6084/m9.figshare.13027487
title: ROIs, probabilistic maps and transform data for pediatric automated fiber quantification

description: Waypoint ROIs and probability maps for automated delineation and segmentation of white matter bundles representing major anatomical brain tracts. These ROIs are matched to the pediatric atlas For usage, see https://yeatmanlab.github.io/pyAFQ<br>Waypoint ROIs and probabiliity maps are generally defined as in: Wakana S, Caprihan A, Panzenboeck MM, et al. Reproducibility of quantitative tractography methods applied to cerebral white matter. Neuroimage. 2007;36(3):630‐644. doi:10.1016/j.neuroimage.2007.02.049<br>The atlas (UNCNeo-withCerebellum-for-babyAFQ.nii.gz) is derived from the UNC 0-1-2 Infant Atlases (https://www.nitrc.org/projects/pediatricatlas)<br>A few changes had to be made to account for the smaller size of baby brains:- A third ROI has been introduced for curvy tracts: ATR, IFO, AF and UCI- ILF posterior ROI has been split into two to separate ILF and mdLF- pAF and VOF ROIs are included here- SLF ROIs are restricted to parietal cortex<br>
DOI: 10.5287/bodleian:yjzbyq98g
title: Research data supporting" Innovative monitoring of the response of a heritage masonry building to nearby tunnelling in London Clay"
DOI: 10.5519/qd.3z8hm46h
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5258/soton/d1277
title: Data for: Repetitive Control and electrode array pattern selection for FES-based Drop-Foot Assistance

description: The data recorded during the thesis. This covers the experimental data which investigated the tracking, convergence, and energy norms of both traditional and point-to-point repetitive control. As well as, the investigation into multiple pad pattern identification for electrode array inputs. Please see the thesis for the methodologies and set up parameters; " Repetitive Control and electrode array pattern selection for FES-based Drop-Foot Assistance".
DOI: 10.17632/75s8ggh2bc.6
title: Data for: Academic Stress and Smartphone Dependence among Chinese Adolescents: A Moderated Mediation Model

description: Linear regression analysis was used to investigate the relationship among the variables. The results showed that academic stress was positively related to psychological distress, which may further lead to severe smartphone dependence. Psychological distress partially mediated the relationship between academic stress and smartphone dependence. The mediating effect of psychological distress between academic stress and smartphone dependence was moderated by academic resilience. Specifically, academic resilience weakened the indirect relationship between academic stress and smartphone dependence that was mediated by psychological distress.
DOI: 10.5258/soton/d1558
title: Objective and behavioural measures of temporal processing in cochlear implant users.

description: Data to support PhD thesis at University of Southampton, "Neural recovery function and behavioural measures of temporal resolution and speech perception in cochlear implant users". Neural recovery - Electrically evoked compound action potential (eCAP) recovery function measurements, obtained at electrode locations 19,16,10,6 Behavioural measures of temporal resolution - Random Gap Detection Test, obtained at 60dBA at frequencies 500Hz, 1000Hz, 2000Hz and 4000Hz Speech measures - Arthur Boothroyd Word List - obtained at presentation levels: 70dBA, 60dBA, 50dBA and 40dBA
DOI: 10.5258/soton/d1548
title: Data supporting 'Investigating the host-pathogen interaction in tuberculosis using emerging imaging modalities'

description: Data acquired during candidature as a PhD student (Sep 2015 - Sep 2019) and formed the basis of PhD thesis titled 'Investigating the host-pathogen interaction in tuberculosis using emerging imaging modalities'. In addition to the files listed on this record, two zip files (78 GB in total) are available on request from researchdata@soton.ac.uk. See the readme file for further information.
DOI: 10.5281/zenodo.4059754
title: data set from Van Bulck L, Luyckx K, Goossens E, Apers S, Kovacs AH, Thomet C, Budts W, Sluman MA, Eriksen K, Dellborg M, Berghammer M, Johansson B, Caruana M, Soufi A, Callus E, Moons P. Patient-reported outcomes of adults with congenital heart disease from eight European countries: scrutinising the association with healthcare system performance. Eur J Cardiovasc Nurs. 2019 Aug;18(6):465-473. doi: 10.1177/1474515119834484. Epub 2019 Feb 26. PMID: 30808198.

description: Data set from the article Van Bulck L, Luyckx K, Goossens E, Apers S, Kovacs AH, Thomet C, Budts W, Sluman MA, Eriksen K, Dellborg M, Berghammer M, Johansson B, Caruana M, Soufi A, Callus E, Moons P. Patient-reported outcomes of adults with congenital heart disease from eight European countries: scrutinising the association with healthcare system performance. Eur J Cardiovasc Nurs. 2019 Aug;18(6):465-473. doi: 10.1177/1474515119834484. Epub 2019 Feb 26. PMID: 30808198. This is the abstract: <strong>Background: </strong>Inter-country variation in patient-reported outcomes of adults with congenital heart disease has been observed. Country-specific characteristics may play a role. A previous study found an association between healthcare system performance and patient-reported outcomes. However, it remains unknown which specific components of the countries' healthcare system performance are of importance for patient-reported outcomes. <strong>Aims: </strong>The aim of this study was to investigate the relationship between components of healthcare system performance and patient-reported outcomes in a large sample of adults with congenital heart disease. <strong>Methods: </strong>A total of 1591 adults with congenital heart disease (median age 34 years; 51% men; 32% simple, 48% moderate and 20% complex defects) from eight European countries were included in this cross-sectional study. The following patient-reported outcomes were measured: perceived physical and mental health, psychological distress, health behaviours and quality of life. The Euro Health Consumer Index 2015 and the Euro Heart Index 2016 were used as measures of healthcare system performance. General linear mixed models were conducted, adjusting for patient-specific variables and unmeasured country differences. <strong>Results: </strong>Health risk behaviours were associated with the Euro Health Consumer Index subdomains about patient rights and information, health outcomes and financing and access to pharmaceuticals. Perceived physical health was associated with the Euro Health Consumer Index subdomain about prevention of chronic diseases. Subscales of the Euro Heart Index were not associated with patient-reported outcomes. <strong>Conclusion: </strong>Several features of healthcare system performance are associated with perceived physical health and health risk behaviour in adults with congenital heart disease. Before recommendations for policy-makers and clinicians can be conducted, future research ought to investigate the impact of the healthcare system performance on outcomes further.
DOI: 10.5281/zenodo.4059753
title: data set from Van Bulck L, Luyckx K, Goossens E, Apers S, Kovacs AH, Thomet C, Budts W, Sluman MA, Eriksen K, Dellborg M, Berghammer M, Johansson B, Caruana M, Soufi A, Callus E, Moons P. Patient-reported outcomes of adults with congenital heart disease from eight European countries: scrutinising the association with healthcare system performance. Eur J Cardiovasc Nurs. 2019 Aug;18(6):465-473. doi: 10.1177/1474515119834484. Epub 2019 Feb 26. PMID: 30808198.

description: Data set from the article Van Bulck L, Luyckx K, Goossens E, Apers S, Kovacs AH, Thomet C, Budts W, Sluman MA, Eriksen K, Dellborg M, Berghammer M, Johansson B, Caruana M, Soufi A, Callus E, Moons P. Patient-reported outcomes of adults with congenital heart disease from eight European countries: scrutinising the association with healthcare system performance. Eur J Cardiovasc Nurs. 2019 Aug;18(6):465-473. doi: 10.1177/1474515119834484. Epub 2019 Feb 26. PMID: 30808198. This is the abstract: <strong>Background: </strong>Inter-country variation in patient-reported outcomes of adults with congenital heart disease has been observed. Country-specific characteristics may play a role. A previous study found an association between healthcare system performance and patient-reported outcomes. However, it remains unknown which specific components of the countries' healthcare system performance are of importance for patient-reported outcomes. <strong>Aims: </strong>The aim of this study was to investigate the relationship between components of healthcare system performance and patient-reported outcomes in a large sample of adults with congenital heart disease. <strong>Methods: </strong>A total of 1591 adults with congenital heart disease (median age 34 years; 51% men; 32% simple, 48% moderate and 20% complex defects) from eight European countries were included in this cross-sectional study. The following patient-reported outcomes were measured: perceived physical and mental health, psychological distress, health behaviours and quality of life. The Euro Health Consumer Index 2015 and the Euro Heart Index 2016 were used as measures of healthcare system performance. General linear mixed models were conducted, adjusting for patient-specific variables and unmeasured country differences. <strong>Results: </strong>Health risk behaviours were associated with the Euro Health Consumer Index subdomains about patient rights and information, health outcomes and financing and access to pharmaceuticals. Perceived physical health was associated with the Euro Health Consumer Index subdomain about prevention of chronic diseases. Subscales of the Euro Heart Index were not associated with patient-reported outcomes. <strong>Conclusion: </strong>Several features of healthcare system performance are associated with perceived physical health and health risk behaviour in adults with congenital heart disease. Before recommendations for policy-makers and clinicians can be conducted, future research ought to investigate the impact of the healthcare system performance on outcomes further.
DOI: 10.6084/m9.figshare.12811772
title: Supplementary Tables 1-24 for "Promoterless Transposon Mutagenesis Drives Solid Cancers via Tumor Suppressor Inactivation"

description: Supplementary Tables 1–24 for manuscript: Promoterless Transposon Mutagenesis Drives Solid Cancers via Tumor Suppressor Inactivation. 2020. Aziz Aiderus, Ana M. Contreras-Sandoval, Amanda L. Meshey, Justin Y. Newberg, Jerrold M. Ward, Deborah Swing, Neal G. Copeland, Nancy A. Jenkins, Karen M. Mann, and Michael B. Mann.<br>These Supplementary Tables describe the tumor incidence and subgroup classifications by cohort groups, sequencing project summary cohorts, specimen metafile data for SB Capture Sequencing (SBCapSeq), BED formatted files containing SB insertions for each cohort, discovery, progression, and trunk SB Driver Analysis results, gene set enrichment analyses, literature References summarizing studies that provide in vivo evidence for validation of the TSGs identified, and gene expression analysis of tumor genomes.<br>
DOI: 10.6084/m9.figshare.12811772.v2
title: Supplementary Tables 1-24 for "Promoterless Transposon Mutagenesis Drives Solid Cancers via Tumor Suppressor Inactivation"

description: Supplementary Tables 1–24 for manuscript: Promoterless Transposon Mutagenesis Drives Solid Cancers via Tumor Suppressor Inactivation. 2020. Aziz Aiderus, Ana M. Contreras-Sandoval, Amanda L. Meshey, Justin Y. Newberg, Jerrold M. Ward, Deborah Swing, Neal G. Copeland, Nancy A. Jenkins, Karen M. Mann, and Michael B. Mann.<br>These Supplementary Tables describe the tumor incidence and subgroup classifications by cohort groups, sequencing project summary cohorts, specimen metafile data for SB Capture Sequencing (SBCapSeq), BED formatted files containing SB insertions for each cohort, discovery, progression, and trunk SB Driver Analysis results, gene set enrichment analyses, literature References summarizing studies that provide in vivo evidence for validation of the TSGs identified, and gene expression analysis of tumor genomes.<br>
DOI: 10.6084/m9.figshare.12811772.v1
title: Supplementary Tables 1-24 for "Promoterless Transposon Mutagenesis Drives Solid Cancers via Tumor Suppressor Inactivation"

description: Supplementary Tables 1–24 for manuscript: Promoterless Transposon Mutagenesis Drives Solid Cancers via Tumor Suppressor Inactivation. 2020. Aziz Aiderus, Ana M. Contreras-Sandoval, Amanda L. Meshey, Justin Y. Newberg, Jerrold M. Ward, Deborah Swing, Neal G. Copeland, Nancy A. Jenkins, Karen M. Mann, and Michael B. Mann.<br>These Supplementary Tables describe the tumor incidence and subgroup classifications by cohort groups, sequencing project summary cohorts, specimen metafile data for SB Capture Sequencing (SBCapSeq), BED formatted files containing SB insertions for each cohort, discovery, progression, and trunk SB Driver Analysis results, gene set enrichment analyses, literature References summarizing studies that provide in vivo evidence for validation of the TSGs identified, and gene expression analysis of tumor genomes.<br>
DOI: 10.6084/m9.figshare.12811685.v1
title: Table 1: SB allele-specific tumor spectrum by whole-body, transposon-mediated mutagenesis in wild type mice.

description: <b>Table 1: SB allele-specific tumor spectrum by whole-body, transposon-mediated mutagenesis in wild type mice. </b>Distribution of cancer types between promoter-driven (SB-Onc3, SB-Onc2) and promoter-less (SB-Onc2.3) transposons.<b></b><br>Table for manuscript: Promoterless Transposon Mutagenesis Drives Solid Cancers via Tumor Suppressor Inactivation. 2020. Aziz Aiderus, Ana M. Contreras-Sandoval, Amanda L. Meshey, Justin Y. Newberg, Jerrold M. Ward, Deborah Swing, Neal G. Copeland, Nancy A. Jenkins, Karen M. Mann, and Michael B. Mann.
DOI: 10.5281/zenodo.4059766
title: PERFORM Dataset; one control subject

description: Functional Magnetic Resonance Imaging (fMRI), electroencephalography (EEG), sleep and nutrition assessments were performed on one male control subject. This registered access dataset is currently accessible on request only.
DOI: 10.6084/m9.figshare.13019813
title: Coastal Sea Level Product 1

description: The NetCDF files shared here are a sea-level altimetry time series data product created by combining data from the Jason-1, Jason-2 and Jason-3 altimetry missions over the period June 2002 - May 2018. This represents a subset of the data products available through the European Space Agency's main sea level data product page (DOI: 10.5270/esa-sl_cci-xtrack_ales_sla-200206_201805-v1.1-202005, see link below). Users are encouraged to check that page for updates and further products if using these data. <br><br>These data correspond to ‘Coastal Sea Level Product 1’ as described in the Data Descriptor manuscript published at <i>Scientific Data</i> by Benveniste et al. <br>