cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21233/n2kq-vm74
title: Le Cachot testate amoebae surface sample dataset

description: Raw data for the Le Cachot testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/jbt2-5y33
title: Escalerani pollen dataset

description: Raw data for the Escalerani pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.29002031
title: Supplemental files

description: Supplemental files, including supporting files for phylogenetic trees, R scripts, and the pangenome summary (Table S6) connected to the manuscript <b>Culture-supported ecophysiology of the SAR116 clade demonstrates metabolic and spatial niche partitioning</b>.
DOI: 10.21233/6gvp-1p03
title: Harding Lakes water chemistry dataset

description: Raw data for the Harding Lakes water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/9ahn-kz33
title: Santa Fe Lake water chemistry dataset

description: Raw data for the Santa Fe Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/q4zm-fd29
title: Sam Martin Lake diatom surface sample dataset

description: Raw data for the Sam Martin Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.52sgq5
title: Occurrence Download

description: A dataset containing 4017 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is AIMS Long-term Monitoring Program: Video and Photo Transects (Great Barrier Reef) - coral cover on standard reefs and paired zoning reefs. Australia (2011-2013)"
 ]
}

 The dataset includes 4017 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024150-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/2dpj-q305
title: Hidden Lake diatom surface sample dataset

description: Raw data for the Hidden Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/6ftv-h112
title: Glaisín na Marbh pollen dataset

description: Raw data for the Glaisín na Marbh pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/sgfc-3t12
title: Kuna L. (11600) water chemistry dataset

description: Raw data for the Kuna L. (11600) water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/zq2e-7x55
title: Bay of Quinte water chemistry dataset

description: Raw data for the Bay of Quinte water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.c9whyx
title: Occurrence Download

description: A dataset containing 437 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chimaphila japonica Miq.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 437 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024151-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/52v9-0d53
title: Haleakalā Volcano 9H pollen surface sample dataset

description: Raw data for the Haleakalā Volcano 9H pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/b7es-6c12
title: Agar Refuge N. Farm water chemistry dataset

description: Raw data for the Agar Refuge N. Farm water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xvs5-ff05
title: Fort Center pollen dataset

description: Raw data for the Fort Center pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6073/pasta/e50ee0431731a8a123abc17bcf13da9d
title: Hydrodynamic Model Output Used to Evaluate Chinook Salmon Movements and Distribution in the South Delta

description: This data release includes the output variables extracted from the UnTRIM Bay-Delta hydrodynamic model (hydrodynamic model) for use in evaluating the effects of hydrodynamics on the behavior of acoustically-tagged juvenile Chinook Salmon (Oncorhynchus tshawytscha) in the Sacramento-San Joaquin Delta. Work was funded by State Water Contractors (SWC) and completed by Anchor QEA; FlowWest, LLC; and University of Washington under a SWC 2023 Science Plan grant (study name Evaluation of the Influence of State Water Project and Central Valley Project on Chinook Salmon Movements and Distribution in the South Delta), contracted by SWC. Not all the hydrodynamic model output variables in the output provided with this memorandum were used in the final fish models used to analyze Chinook Salmon responses. Model output for additional variables and locations were included for completeness and to make these output files more broadly useful to researchers interested in other locations or variables in the Sacramento-San Joaquin Delta. Hydrodynamic model simulations were conducted for 2010, 2011, 2012, 2013, 2014, 2015, 2016, and 2017, with hydrodynamic model output variables provided at mostly the same locations for each period simulated. The years 2011 through 2016 were simulated previously for a prior project and model output provided through the Environmental Data Initiative (edi.1124.1). Files for these years were recreated from the prior simulations for this project to add an output location. Additional locations were added to the 2010 and 2017 simulations for the 2010 and 2017 hydrophone arrays, and thus 2010 and 2017 include additional model output, relative to 2011 through 2016. The model simulation for each year spanned the full period of Chinook Salmon detections in the telemetry data collected during that year.
DOI: 10.21233/xdcn-mk60
title: LDDsite1646 ostracode surface sample dataset

description: Raw data for the LDDsite1646 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/dwct-nj52
title: Schwarzsee pollen surface sample dataset

description: Raw data for the Schwarzsee pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/x69f-xr20
title: Stoughton Lake water chemistry dataset

description: Raw data for the Stoughton Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/e9z1-tx16
title: Shaup water chemistry dataset

description: Raw data for the Shaup water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/dtbs-bj89
title: Big Moose Lake diatom surface sample dataset

description: Raw data for the Big Moose Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/yx6p-jq54
title: Lago Lungo pollen dataset

description: Raw data for the Lago Lungo pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/x80s-3834
title: Anderssonbukta peninsula pollen surface sample dataset

description: Raw data for the Anderssonbukta peninsula pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.dvrt8q
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parathelypteris japonica (Baker) Ching",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 56 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024152-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drnrfr
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Zamia spartea A.DC."
 ]
}

 The dataset includes 58 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024153-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/w66s-z343
title: Spring PL4 SE ostracode surface sample dataset

description: Raw data for the Spring PL4 SE ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ch5r-gp76
title: LDDsite2884 water chemistry dataset

description: Raw data for the LDDsite2884 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/7yb7-0v46
title: Gosan-Ri ostracode surface sample dataset

description: Raw data for the Gosan-Ri ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/qwy7-2608
title: SIER8 pollen surface sample dataset

description: Raw data for the SIER8 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/fx3e-4k29
title: Cranberry water chemistry dataset

description: Raw data for the Cranberry water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/rjmw-0p82
title: 207 pollen surface sample dataset

description: Raw data for the 207 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/4npr-yf36
title: Gallelli Pit [EfPm-102] vertebrate fauna dataset

description: Raw data for the Gallelli Pit [EfPm-102] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/yjcp-pa37
title: Douglas State Forest Pond, MA pollen surface sample dataset

description: Raw data for the Douglas State Forest Pond, MA pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/3j27-d428
title: Silver Lake ostracode surface sample dataset

description: Raw data for the Silver Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.25493/1r2m-ph7
title: Cortical microcircuit model validation data for NEST and NEST GPU (2.0)

description: The dataset has been produced to validate the NEST GPU library on the simulation of the cortical microcircuit model, taking the NEST simulator as a reference. A previous version of the NEST GPU library (labeled "offboard" here) has already been validated. This dataset enables the validation of the most recent version of the library (labeled "onboard"), which implements a different network construction algorithm.The dataset contains all the Python scripts needed to reproduce the validation plots and the data is organized into different sets of NEST and NEST GPU simulations for the validation to be done. Each set contains 100 simulations using different seeds for random number generation. The dataset stores the results of these simulations in the form of spike data and organizes this data into csv. The Python pipeline enables the creation of the csv files, however, they are provided even so to enable a quick reproduction of the validation figures.
This work has been performed in the context of a publication that presents the new network construction algorithm of NEST GPU.
DOI: 10.25493/mta5-c65
title: Ratlas-LH: An MRI template of the Lister hooded rat brain with stereotaxic coordinates (v1.0)

description: Ratlas-LHM is an anatomical average template of the rat brain that was created to provide accurate stereotaxic coordinates for surgical implantations in the adult male Lister hooded rat. The brain template was produced from in vivo magnetic resonance imaging (MRI) data and is available with and without anatomical average skull data, which was obtained ex vivo using micro-computed tomography. Both versions of the template can be used to provide accurate stereotaxic coordinates for brain regions in the adult male Lister hooded rat. A set of brain delineations from the Waxholm space rat brain atlas have been warped to fit the Ratlas-LH brain template in order to provide a guide to brain areas. Ratlas-LH is freely available to be used in publications for the display or registration of data acquired from the Lister hooded rat using methods that do not generate a useful anatomical image.
DOI: 10.25493/da1a-y5f
title: Optimized SynActive tools to study structure and function of potentiated synapses (v2)

description: Synaptic engrams can be defined as the synapse population of neurons supporting a specific memory and are believed to represent the cellular basis of learning processes characterized by newly formed or potentiated spines. We developed a new platform (SA =SynActive toolbox) in which a prototypical pair of SA constructs was employed to tag and visualize translation-dependent potentiated dendritic spines, in a spatially localized and activity-dependent manner ([Gobbo et al. 2017](https://doi.org/10.1038/s41467-017-01699-7), [Gobbo et al. 2020](https://doi.org/10.3389/fnmol.2020.572312)).

We created a series of new Adeno Associated Viruses (AAV)-derived constructs: 1) SA-eGRASP; 2) PHP.eB-SA; 3) AAV9-SA. Such vectors represent a fundamental advancement as compared with the original SA constructs both in terms of spatial resolution and in view of in vitro and in vivo use for specific CNS targeting.

The new pair was stereotaxically injected into the hippocampus. Injected mice were exposed to contextual fear conditioning to trigger synaptic plasticity and translation-dependent long-term potentiation (LTP) of synapses. We also infected organotypic hippocampal slices with the appropriate AAV pair, before stimulating with chemical or electrical LTP. 

A specific SA signal (identifying translation-dependent potentiated synapses) was revealed following confocal imaging of hippocampus from perfused mice and fixed organotypic slices. Potentiated spines along the dendritic tree of hippocampal pyramidal neurons were quantified and their distribution was investigated. All these new datasets can be exploited for computational models of synaptic memory engrams.
DOI: 10.21233/yay2-4331
title: Ward's Spring Pond water chemistry dataset

description: Raw data for the Ward's Spring Pond water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ktht-hq84
title: Quesnel Forks Mountain Goat vertebrate fauna dataset

description: Raw data for the Quesnel Forks Mountain Goat vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.bgjxpc
title: Occurrence Download

description: A dataset containing 1423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polystichum ovatopaleaceum var. coraiense (Christ) Sa.Kurata",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1423 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024154-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/4az8-5z38
title: Pita [KcFr-5] vertebrate fauna dataset

description: Raw data for the Pita [KcFr-5] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/te2y-f891
title: Scovill [11F106] vertebrate fauna dataset

description: Raw data for the Scovill [11F106] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/t49j-xw25
title: LDDsite3600 water chemistry dataset

description: Raw data for the LDDsite3600 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.