cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.d6e3nt
title: Occurrence Download

description: A dataset containing 179 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miconia trichotoma (Desr.) DC."
 ]
}

 The dataset includes 179 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150946-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k1pgsn
title: Occurrence Download

description: A dataset containing 1366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmodium Desv.",
 "Geometry POLYGON((-100.67 16.15,-100.67 20.31,-93.78 20.31,-93.78 16.15,-100.67 16.15))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1366 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003843-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.962a3t
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremanthodium arnicoides (DC. ex Royle) R.D.Good"
 ]
}

 The dataset includes 219 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150951-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qo7hhm
title: Occurrence Download

description: A dataset containing 337328 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gobiidae"
 ]
}

 The dataset includes 337328 records from 343 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003843-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9jajs
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miconia globuliflora (Rich.) Cham. ex Triana"
 ]
}

 The dataset includes 297 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150948-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ji4xmo
title: Occurrence Download

description: A dataset containing 3553 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polytrichum commune Hedw.",
 "Country is Sweden",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Material sample"
 ]
 },
 "Year 1990-2016"
 ]
}

 The dataset includes 3553 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003843-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2wsvh
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremanthodium bulbilliferum W.W.Sm."
 ]
}

 The dataset includes 65 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150964-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvkwrt
title: Occurrence Download

description: A dataset containing 1000699 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Animalia",
 "DecimalLatitude is greater than 41.3238930974452",
 "DecimalLatitude is less than 41.9024261989726",
 "DecimalLongitude is greater than -87.7064429074846",
 "DecimalLongitude is less than -86.5902108777161"
 ]
}

 The dataset includes 1000699 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003843-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b8dcdo
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asplenium lacinulatum Schrad.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003844-150410134957023/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmqgar
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremanthodium conaense S.W.Liu"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150972-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4lau13
title: Occurrence Download

description: A dataset containing 42226 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andropogon L."
 ]
}

 The dataset includes 42226 records from 344 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003844-150528172251762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6tjum
title: Occurrence Download

description: A dataset containing 1514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "TaxonKey is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 1514 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150967-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfvd5z
title: Occurrence Download

description: A dataset containing 2478 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oryza glaberrima Steud.",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -82,-180 82,180 82,180 -82,-180 -82))"
 ]
}

 The dataset includes 2478 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003844-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48u5xr
title: Occurrence Download

description: A dataset containing 118768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Lepidoptera World (Luomus) (LEPW)"
 ]
}

 The dataset includes 118768 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041191-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o467di
title: Occurrence Download

description: A dataset containing 3684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Reptilia",
 "Country is Algeria"
 ]
}

 The dataset includes 3684 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003844-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7pwyry
title: Occurrence Download

description: A dataset containing 6966 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección Herpetológica (Anfibios) del Museo de Historia Natural de la Universidad Industrial de Santander"
 ]
}

 The dataset includes 6966 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041205-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gtayas
title: Occurrence Download

description: A dataset containing 173363 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fulmarus glacialis (Linnaeus, 1761)"
 ]
}

 The dataset includes 173363 records from 198 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003844-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4w8ps8
title: Occurrence Download

description: A dataset containing 3518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Oriolus chinensis Linnaeus, 1766"
 ]
}

 The dataset includes 3518 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150947-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55mxh4
title: Occurrence Download

description: A dataset containing 536 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Absolute abundances of benthic foraminifera in ODP Site 120-747"
 ]
}

 The dataset includes 536 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003844-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jry5z6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremanthodium botrycephalum S.W.Liu"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150961-230224095556074/datasets/export for details.
DOI: 10.15468/dl.xwdbqs
title: Occurrence Download

description: A dataset containing 578 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ixobrychus sturmii (Wagler, 1827)",
 "Country is South Africa"
 ]
}

 The dataset includes 578 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003844-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ps99tq
title: Occurrence Download

description: A dataset containing 4066 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Proyecto fauna y sistemas productivos en el área de influencia de la Central Hidroeléctrica Sogamoso - Santander"
 ]
}

 The dataset includes 4066 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041171-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.euyjoq
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ictalurus lupus (Girard, 1858)"
 ]
}

 The dataset includes 246 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003844-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6bfv53
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Orthopyxis tincta (Hincks, 1861), Symplectoscyphus naumovi Blanco, 1969, Thouarella pendulina (Roule, 1908))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Human Observation)"
 ]
 }
 }
 ]
}

 The dataset includes 116 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032215-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.50tlml
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aulonium trisulcum (Geoffroy, 1785)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 152 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003844-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkty7m
title: Occurrence Download

description: A dataset containing 1460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cystopteris bulbifera (L.) Bernh.",
 "Year 2000-2023"
 ]
}

 The dataset includes 1460 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033349-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oqktid
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium sieheanum Hausskn. ex Kollmann"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003845-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q9gag3
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremanthodium bhutanicum Ludlow"
 ]
}

 The dataset includes 25 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150955-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ay5tts
title: Occurrence Download

description: A dataset containing 1326 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heuchera cylindrica Douglas"
 ]
}

 The dataset includes 1326 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003845-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5bj4d
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremanthodium bupleurifolium W.W.Sm."
 ]
}

 The dataset includes 58 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150965-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gckc1j
title: Occurrence Download

description: A dataset containing 54660 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trochilidae",
 "Geometry POLYGON((-78.72 3.70,-78.72 12.38,-64.94 12.38,-64.94 3.70,-78.72 3.70))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 54660 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003845-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8nwjxm
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremanthodium cucullatum Y.Ling & S.W.Liu"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150977-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxdbt1
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Tab. 9) Occurence of microfossils in Late Jurassic sediments of DSDP Hole 36-330, Falcland Plateau"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003845-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9qe7je
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ligularia cremanthodioides Hand.-Mazz."
 ]
}

 The dataset includes 27 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150976-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5awmq
title: Occurrence Download

description: A dataset containing 354 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Foraminifera distribution of sediment core KS310"
 ]
}

 The dataset includes 354 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003845-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ctsvqp
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremanthodium cyclaminanthum Hand.-Mazz."
 ]
}

 The dataset includes 13 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150978-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k68vst
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sedum sarmentosum",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 202 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015685-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s94azz
title: Occurrence Download

description: A dataset containing 510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sedum sarmentosum",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 510 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015686-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/1759
title: Predictive modelling of the COMATOSE transporter reveals a conserved ligand binding pocket for acyl-CoAs and validates previous functional studies

description: Models of plant peroxisomal transporter COMATOSE (CTS) generated with AlphaFold2/3. Three distinct states were produced of the apo, ATP-bound and ADP-bound conformations. Docking of C22:0-CoA and CoA alone to models of plant peroxisomal transporter COMATOSE (CTS). These models include the apo, ATP-bound and ADP-boudn conformations generated with AlphaFold2/3.
DOI: 10.5281/zenodo.17060310
title: ClinvArbitration data release - September 2025

description: This file is a tarball representing the ClinvArbitration re-summary of ClinVar's raw submissions. The ClinvArbitration project represents an altered aggregation of the individual submissions, preferring to break ties when presented with submissions which don't all agree, instead of defaulting to a rating of "conflicting interpretations of pathogenicity". This leads to more variants being presented as either B/LB, or P/LP, and a reduced grey area between.

This data release contains a four items:



The results of the re-interpretation of ClinVar, presented as a Hail Table, and as a TSV

All Pathogenic Missense variants in the ClinVar re-interpretation, indexed by Ensembl Transcript and Codon number


This second part is not easily applied by existing tools, approximating the PM5 consequence category according to the ACMG criteria, and represents the following:



For each Pathogenic SNV in ClinVar, we annotate the variants using BCFtools CSQ. For each Pathogenic SNV which is also a Missense variant, we reogrganise the data to be indexed on Transcript and Codon number. This can then be inverted to annotate genetic variation - if a variant is a Missense, and a ClinVar pathogenic Missense variant exists affecting the same Codon, we annotate the Missense with co-located known pathogenic ClinVar entries, in case this contributes to the interpretation of the variant under investigation.


I would like to acknowledge that since this side project started, a substantial curation effort has been made in ClinVar, so the gap between the standard and re-interpreted ClinVar results has closed substantially. The exact data format presented here is required by Talos, a whole-Exome/Genome variant prioritisation tool, so despite the increasing consistency between the two results sets this exact data format should continue to be distributed.

This release builds on the previous release by including Mitochondrial variants. These Mito submissions are not part of the PM5/missense matched dataset, but are present as individual decisions.
DOI: 10.15468/dl.wtbcwe
title: Occurrence Download

description: A dataset containing 1029 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1029 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015689-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbvu43
title: Occurrence Download

description: A dataset containing 7368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Brazil",
 "GadmGid is BRA.4_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 7368 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015690-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.