cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mgeukd
title: Occurrence Download

description: A dataset listing the 10633 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is EOD – eBird Observation Dataset"
 ]
}

 The dataset's 10633 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033146-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8338472
title: Coat protein (CP) and trimmed replication-associated protein (Rep) amino acid alignments, phylogenetic analyses, and associated metadata for ICTV-approved begomovirus RefSeq species exemplars

description: DATA RETRIEVAL Annotated begomovirus coding sequences corresponding to each begomovirus species exemplar with a RefSeq accession number listed in the ICTV Virus Metadata Resource (VMR #18, 2021-10-19, https://ictv.global/vmr) were downloaded from GenBank in protein FASTA file format. CP and Rep amino acid sequences were extracted and split into separate data sets for analysis. We confirmed the identity of misannotated ORF products by performing a BLAST search ALIGNMENTS Multiple sequence alignments were constructed using the MUSCLE method (Edgar, 2004) as implemented in MEGA 11 (Tamura et al., 2021) and manually corrected using AliView v1.26<strong> </strong>(Larsson, 2014). After an initial alignment inspection, exemplars with either severely truncated (i.e., length &lt; 50% of the average length of the protein) or very divergent (i.e., causing us to doubt protein homology) CP or Rep sequences were excluded from the data set. Due to the difficulties in aligning the Rep sequences at the N- and C- terminal ends, the Rep alignment was trimmed to eliminate all residues prior to the iteron related domain (i.e., the known Rep functional region closest to the Rep start (Arguello-Astorga & Ruiz-Medrano, 2001)) in the N-terminus and after a conserved geminivirus motif found near the C-terminus, which corresponds to where other circular, Rep-encoding single-stranded DNA viruses possess an arginine finger motif (Kazlauskas et al., 2019; Krupovic et al., 2020). In total, our CP and Rep data sets contained amino acid sequences from 432 begomovirus species exemplars that met our inclusion criteria. PHYLOGENETIC ANALYSIS Maximum likelihood (ML) trees were inferred with IQ-Tree v2.0.7 (Minh et al., 2020) using the best fitting substitution model identified by the built-in ModelFinder feature (Kalyaanamoorthy et al., 2017). Tree inference was performed with 3000 ultrafast bootstrap (UFBoot) replicates, a perturbation strength of 0.2 and a stopping rule requiring an iteration interval of 500 iterations between unsuccessful improvements to the local optimum. The -bnni flag was enabled to reduce the risk of overestimating branch supports with UFBoot due to severe model violations. The provided phylogenies in NEXUS format are midpoint-rooted and branches are colored based on traditional begomovirus geographic groupings: exemplars sampled in the Americas in orange and exemplars sampled in the 'Africa, Asia, Europe and Oceania' region in blue. METADATA Metadata associated with each ICTV-approved species exemplar (n=445) – including country of isolation, geographic designation (i.e., AAEO/Americas), genome segmentation (i.e., monopartite/bipartite), presence/absence of V2/AV2 gene and length of genome/DNA-A segments – are included. Exemplars not incorporated into the other analyses are highlighted in red in the spreadsheet.
DOI: 10.15468/dl.vsbf6r
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Brachypelma boehmei Schmidt & Klaas, 1993"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033157-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvstfd
title: Occurrence Download

description: A dataset containing 724039 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NMNH Paleobiology Specimen Records (USNM)"
 ]
}

 The dataset includes 724039 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033144-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13850741
title: scCTS: identifying the cell type-specific marker genes from population-level single-cell RNA-seq

description: Single cell RNA-sequencing (scRNA-seq) provides gene expression profiles of individual cells from complex samples, facilitating the detection of cell type-specific marker genes. In scRNA-seq experiments with multiple donors, the population level variation brings an extra layer of complexity in cell type-specific gene detection, for example, they may not appear in all donors. Motivated by this observation, we develop a statistical model named scCTS to identify cell type-specific genes from population-level scRNA-seq data. Extensive data analyses demonstrate that the proposed method identifies more biologically meaningful cell type-specific genes compared to traditional methods.
DOI: 10.5281/zenodo.13850742
title: scCTS: identifying the cell type-specific marker genes from population-level single-cell RNA-seq

description: Single cell RNA-sequencing (scRNA-seq) provides gene expression profiles of individual cells from complex samples, facilitating the detection of cell type-specific marker genes. In scRNA-seq experiments with multiple donors, the population level variation brings an extra layer of complexity in cell type-specific gene detection, for example, they may not appear in all donors. Motivated by this observation, we develop a statistical model named scCTS to identify cell type-specific genes from population-level scRNA-seq data. Extensive data analyses demonstrate that the proposed method identifies more biologically meaningful cell type-specific genes compared to traditional methods.
DOI: 10.15468/uqsgv2
title: Field Museum of Natural History (Zoology) Bird Egg Collection

description: The Field Museum's Bird Division egg and nest collections contains more than 500,000 data-rich specimens, our worldwide collections receive heavy use by US and international visitors and borrowers.
DOI: 10.5281/zenodo.13851252
title: Managerial Attributes and Corporate Hedging Decision

description: This dataset is a panel dataset of 241 non-financial African corporations spanning 2013-2022. This data is a sample of the attributes of executives in Africa. This was collated from a secondary source, including annual reports, financial databases (Bloomberg, Fitch Connect, and Datastream), Linkendin, and the Times Higher Education Ranking.
DOI: 10.5281/zenodo.13851253
title: Managerial Attributes and Corporate Hedging Decision

description: This dataset is a panel dataset of 241 non-financial African corporations spanning 2013-2022. This data is a sample of the attributes of executives in Africa. This was collated from a secondary source, including annual reports, financial databases (Bloomberg, Fitch Connect, and Datastream), Linkendin, and the Times Higher Education Ranking.
DOI: 10.15468/dl.rppmjd
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eretmobrycon Fink, 1976",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 235 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033161-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j29c3h
title: Occurrence Download

description: A dataset containing 268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Occurrence evidence, Human Observation)",
 "Continent is South America",
 "Geometry POLYGON((-65 -36,-37 -36,-37 -16,-65 -16,-65 -36))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eichhornia crassipes (Mart.) Solms",
 "Year 1949-2024"
 ]
}

 The dataset includes 268 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033162-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwkbpy
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Furipterus horrens (F.Cuvier, 1828)"
 ]
}

 The dataset's 1 records were derived from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033158-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hsmtp2
title: Occurrence Download

description: A dataset containing 9495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Erythranthe guttata (DC.) G.L.Nesom",
 "Year 2004-2024"
 ]
}

 The dataset includes 9495 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033163-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27122070.v1
title: UK_Hcyan_1_0

description: Annotation of the protein-coding genes in the <i>Herichthys cyanoguttatus </i>chromosome-level genome assembly deposited into NCBI under BioProject PRJNA1163081.
DOI: 10.6084/m9.figshare.27122070
title: UK_Hcyan_1_0

description: Annotation of the protein-coding genes in the <i>Herichthys cyanoguttatus </i>chromosome-level genome assembly deposited into NCBI under BioProject PRJNA1163081.
DOI: 10.15468/dl.gqsxc7
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bryx analicarens (Duncker, 1915)"
 ]
}

 The dataset includes 43 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033164-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13851518
title: Automated Cell type Annotation Testing with Clear Cell Renal Cell Carcinoma
DOI: 10.5281/zenodo.13851519
title: Automated Cell type Annotation Testing with Clear Cell Renal Cell Carcinoma
DOI: 10.15468/dl.9jpvfy
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Brachypelma hamorii Tesmoingt, Cleton & Verdez, 1997"
 ]
}

 The dataset includes 76 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033166-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p90pdi34
title: Data and R Code to Derive Estimates of Groundwater Levels Using MOVE.1 Regression and Compute Monthly Percentiles for Select Wells in Massachusetts

description: This data release contains extended estimates of daily groundwater levels and monthly percentiles at 27 short-term monitoring wells in Massachusetts. The Maintenance of Variance Extension Type 1 (MOVE.1) regression method was used to extend short-term groundwater levels at wells with less than 10 years of continuous data. This method uses groundwater level data from a correlated long-term monitoring well (index well) to estimate the groundwater level record for the short-term monitoring well. MOVE.1 regressions are used widely throughout the hydrologic community to extend flow records from streamgaging stations but are less commonly used to extend groundwater records at wells. The data in this data release document the results of the MOVE.1 regressions to estimate groundwater levels and compute updated monthly percentiles for select wells used in the groundwater index in the Massachusetts Drought Management Plan (2019). The U.S. Geological Survey (USGS) groundwater identification site numbers and groundwater level data are available via the USGS National Water Information System (NWIS) database (available at https://waterdata.usgs.gov/nwis). Groundwater levels provided are in depth to water level, in feet below land surface datum. This data release accompanies a USGS scientific investigations report that describes the methods and results in detail (Ahearn and Crozier, 2024).

Reference: Massachusetts Executive Office of Energy and Environmental Affairs and Massachusetts Emergency Management Agency, 2019, Massachusetts drought management plan: Executive Office of Energy and Environmental Affairs, 115 p., accessed September 2022, at https://www.mass.gov/doc/massachusetts-drought-management-plan

The following are included in the data release:
(1) R input file that lists the final site pairings (R_Input_MOVE1_Site_List.csv)
(2) R script that performs the MOVE.1 and produces outputs for evaluation purposes (MOVE1_R_code.R)
(3) MOVE.1 model outputs (MOVE1_Models.zip)
(4) Estimates of daily groundwater levels using the MOVE.1 regression technique (MOVE1_Estimated_Record_Tables.zip)
(5) Plots showing time series of estimated daily groundwater levels from the MOVE.1 technique (MOVE1_Estimated_Record_Plots.zip)
(6) Plots showing time series of estimated daily groundwater levels from the MOVE.1 technique zoomed into the period of observed daily groundwater levels for the short-term site (Zoomed_MOVE1_Estimated_Record_Plots.zip)
(7) Plots showing residuals (Residuals_WL_Plots.zip)
(8) Monthly percentile table for 27 study wells (GWL_Percentiles_All_Study_Wells.csv)
DOI: 10.15468/dl.aj9ced
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tliltocatl kahlenbergi (Rudloff, 2008)"
 ]
}

 The dataset includes 102 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033167-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pv4rgn
title: Occurrence Download

description: A dataset containing 200 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monardella viminea Greene"
 ]
}

 The dataset includes 200 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033169-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbt2an
title: Occurrence Download

description: A dataset containing 5499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anaxagorea brachycarpa R.E.Fr., Anaxagorea brevipes Benth., Anaxagorea gigantophylla R.E.Fr., Anaxagorea pachypetala (Diels) R.E.Fr., Anaxagorea javanica Blume, Anaxagorea silvatica R.E.Fr., Anaxagorea manausensis Timmerman, Anaxagorea borneensis (Becc.) J.Sinclair, Anaxagorea prinoides (Dunal) A.DC., Anaxagorea dolichocarpa Sprague & Sandwith, Anaxagorea panamensis Standl., Anaxagorea allenii R.E.Fr., Anaxagorea crassipetala Hemsl., Anaxagorea acuminata (Dunal) A.DC., Anaxagorea rheophytica Maas & Westra, Anaxagorea petiolata R.E.Fr., Anaxagorea guatemalensis Standl., Anaxagorea phaeocarpa Mart., Anaxagorea luzonensis A.Gray, Anaxagorea brevipedicellata Timmerman, Anaxagorea inundata P.E.Berry & R.B.Miller, Anaxagorea angustifolia Timmerman)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 5499 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033168-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4dj2v
title: Occurrence Download

description: A dataset containing 14001 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xylopia crinita R.E.Fr., Xylopia macrantha Triana & Planch., Xylopia pulcherrima Sandwith, Xylopia surinamensis R.E.Fr., Xylopia aromatica (Lam.) Mart., Xylopia frutescens Aubl., Xylopia nitida Dunal, Xylopia brasiliensis Spreng., Xylopia langsdorfiana A.St.-Hil. & Tul., Xylopia peruviana R.E.Fr., Xylopia bocatorena Schery, Xylopia aethiopica (Dunal) A.Rich.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 14001 records from 429 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033170-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djpq9x
title: Occurrence Download

description: A dataset containing 9495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Erythranthe guttata (DC.) G.L.Nesom",
 "Year 2004-2024"
 ]
}

 The dataset includes 9495 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033171-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p13vm7vj
title: 2014 Social Vulnerable Index factors compiled for CONUS at the NHDPlusV2 scale

description: The released data contain both a csv and parquet file summarizing the Centers for Disease Control (CDC) Social Vulnerability Index (SVI), at the NHDPlus V2 stream catchment scale. Dasymetric mapping was utilized to bound 2014 populations to the 2013 National Land Cover Dataset and then trim them to NHDPlus V2 catchments. These produced data are summarized as numbers of people within each listed category and is based on the 2014 version of the SVI, using any factors that were produced using estimated population, which are listed below:
- Below Poverty
- Unemployed
- No High School Diploma
- Aged 65 or Older
- Aged 17 or Younger
- Civilian with a Disability
- Single-Parent Households
- Minority
- Speaks English "Less than Well"
- Multi-Unit Structures
- Mobile Homes
- Crowding
- No Vehicle
- Group Quarters

As a convenience, data are also provided in parquet table format with identical values. Parquet tables can be accessed using the "arrow" package in RStudio. An example command to open the file is:
arrow::read_parquet(filepath, "SVI_Count_2014.parquet")

Any mention of product names and companies are for documentation purposes only and do not represent official USGS endorsement.
DOI: 10.15468/dl.7m8dwk
title: Occurrence Download

description: A dataset containing 9495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Erythranthe guttata (DC.) G.L.Nesom",
 "Year 2004-2024"
 ]
}

 The dataset includes 9495 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033173-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zq6vrh
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Squamata",
 "TaxonKey is Crocodylia",
 "TaxonKey is Testudines",
 "TaxonKey is Sphenodontia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "and" : [
 "DecimalLongitude is greater than 173.2510986",
 "DecimalLongitude is less than 176.4605865",
 "DecimalLatitude is greater than -1.3751841",
 "DecimalLatitude is less than 2.0610759",
 "Country is Kiribati"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033174-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p193ct25
title: Community Exposure in U.S. American Samoa to Future Coastal Flooding Hazards, reference year 2020

description: The data set contains information on potential population, economic, land cover, and infrastructure exposure to coastal hazards for coastal communities of the territory of American Samoa, USA.  The type of information includes U.S. Census Bureau data on the number of residents, land cover estimates from the National Oceanic and Atmospheric Administration (NOAA), and infrastructure data on roads and critical facilities from a variety of sources.
DOI: 10.15468/dl.hspzf3
title: Occurrence Download

description: A dataset containing 7579309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Tringa flavipes (J.F.Gmelin, 1789), Tringa solitaria A.Wilson, 1813, Actitis macularius (Linnaeus, 1766), Gallinago delicata (Ord, 1825))"
 ]
}

 The dataset includes 7579309 records from 544 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033165-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hu3paj
title: Occurrence Download

description: A dataset containing 4509170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (University of Michigan Herbarium, The New York Botanical Garden Herbarium (NY), MO herbarium - Missouri Botanical Garden - Amostras Brasileiras Repatriadas - Herbário Virtual REFLORA, Bernice P. Bishop Museum, University of Colorado Museum of Natural History Herbarium Vascular Plant Collection)",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 4509170 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033159-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13851568
title: SAR Ship Detection

description: you can use the file.
DOI: 10.5281/zenodo.13851569
title: SAR Ship Detection

description: you can use the file.