cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1606256.v1
title: The raw data and the results of the particle metric analysis performed for the SEM images of the WT biofilm cells in K10T-1 at 6hrs

description: The “SEM images” folder contains the original SEM images obtained for the analyses, and the selected particles are shown in several colors in the each image in the “Particle images” folder. The “particle.csv” is the excel file in which information on each particle is described. The “report.doc” file is the summary of the analysis that contains statistical data on the analysis.
DOI: 10.6084/m9.figshare.1606257.v1
title: The raw data and the results of the particle metric analysis performed for the SEM images of the WT biofilm cells in K10T-1 with 0.2mM adenine at 6hrs

description: The “SEM images” folder contains the original SEM images obtained for the analyses, and the selected particles are shown in several colors in the each image in the “Particle images” folder. The “particle.csv” is the excel file in which information on each particle is described. The “report.doc” file is the summary of the analysis that contains statistical data on the analysis.
DOI: 10.6084/m9.figshare.1606225
title: Fecundity phenotypes and genotypes of advanced intercross chickens

description: Phenotypes and genotypes (in R/qtl csv format) underlying Johnsson et al "Quantitative trait locus and genetical genomics analysis identifies putatively causal genes for fecundity and brooding in the chicken" G3
DOI: 10.6084/m9.figshare.1606233.v1
title: Cost-effectiveness of combined sexual and injection risk reduction interventions among Female Sex Workers who inject drugs in two very distinct Mexican border cities

description: Data used for cost effectiveness analysis for the Mujer Mas Segura brief behavioral intervention.
DOI: 10.6084/m9.figshare.1606220
title: Captions for datafiles for strong relationships in acid-base chemistry

description: File including names for data in the dat files
DOI: 10.6084/m9.figshare.1606225.v1
title: Fecundity phenotypes and genotypes of advanced intercross chickens

description: Phenotypes and genotypes (in R/qtl csv format) underlying Johnsson et al "Quantitative trait locus and genetical genomics analysis identifies putatively causal genes for fecundity and brooding in the chicken" G3
DOI: 10.6084/m9.figshare.1606140
title: Cavalier King Charles Spaniels with Chiari-like malformation and Syringomyelia have increased variability of spatio-temporal gait characteristics

description: Cavalier King Charles Spaniels and border terriers, gait analysis data
DOI: 10.6084/m9.figshare.1606222
title: Gaussian Job Archive for C6H20O8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1606222.v1
title: Gaussian Job Archive for C6H20O8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1606036
title: 16S rRNA gene amplicon sequencing data

description: Gut microbiome 16S rRNA gene amplicon (V4 region) dataset from Oklahoma
DOI: 10.6084/m9.figshare.1606220.v2
title: Captions for datafiles for strong relationships in acid-base chemistry

description: File including names for data in the dat files
DOI: 10.6084/m9.figshare.1606036.v1
title: 16S rRNA gene amplicon sequencing data

description: Gut microbiome 16S rRNA gene amplicon (V4 region) dataset from Oklahoma
DOI: 10.6084/m9.figshare.1606220.v1
title: LL.dat

description: File including names for data in the dat files
DOI: 10.6084/m9.figshare.1605638
title: Where Have All the People Gone? A Puzzle from Middle and Late Iron Age Essex

description: A survey of 211 Iron Age roundhouses from twenty-five settlements across Essex shows a steep Late Iron Age fall in numbers from a Middle Iron Age peak. It cannot be explained by the replacement of the roundhouse with an architectural form that left little trace in the ground because the roundhouse remained a living architectural tradition until the late Roman period in the county. Nine of these twenty-five settlements were abandoned in or before the Late Iron Age, but have next to nothing in the way of pre-conquest artefacts that could have come from houses of that date which had not survived. The fall in roundhouse numbers is interpreted as a population contraction of at least 50 % over the period c. 125–25 BC. Political upheaval may have been partly responsible. No environmental changes could be identified as contributory factors. Population retreat in the county explains the dearth of Late Iron Age settlements and the absence of large cemeteries.
DOI: 10.6084/m9.figshare.1605638.v1
title: Where Have All the People Gone? A Puzzle from Middle and Late Iron Age Essex

description: A survey of 211 Iron Age roundhouses from twenty-five settlements across Essex shows a steep Late Iron Age fall in numbers from a Middle Iron Age peak. It cannot be explained by the replacement of the roundhouse with an architectural form that left little trace in the ground because the roundhouse remained a living architectural tradition until the late Roman period in the county. Nine of these twenty-five settlements were abandoned in or before the Late Iron Age, but have next to nothing in the way of pre-conquest artefacts that could have come from houses of that date which had not survived. The fall in roundhouse numbers is interpreted as a population contraction of at least 50 % over the period c. 125–25 BC. Political upheaval may have been partly responsible. No environmental changes could be identified as contributory factors. Population retreat in the county explains the dearth of Late Iron Age settlements and the absence of large cemeteries.
DOI: 10.6084/m9.figshare.1605597
title: How do general practitioners use ‘safety netting’ in acutely ill children?

description: <b>Background</b>: ‘Safety netting’ advice allows general practitioners (GPs) to cope with diagnostic uncertainty in primary care. It informs patients on ‘red flag’ features and when and how to seek further help. There is, however, insufficient evidence to support useful choices regarding ‘safety netting’ procedures. <b>Objectives</b>: To explore how GPs apply ‘safety netting’ in acutely ill children in Flanders. <b>Methods</b>: We designed a qualitative study consisting of semi-structured interviews with 37 GPs across Flanders. Two researchers performed qualitative analysis based on grounded theory components. <b>Results</b>: Although unfamiliar with the term, GPs perform ‘safety netting’ in every acutely ill child, guided by their intuition without the use of specific guidelines. They communicate ‘red flag’ features, expected time course of illness and how and when to re-consult and try to tailor their advice to the context, patient and specific illness. Overall, GPs perceive ‘safety netting’ as an important element of the consultation, acknowledging personal and parental limitations, such as parents’ interpretation of their advice. GPs do not feel a need for any form of support in the near future. <b>Conclusion</b>: GPs apply ‘safety netting’ intuitively and tailor the content. Further research should focus on the impact of ‘safety netting’ on morbidity and how the advice is conveyed to parents.
DOI: 10.6084/m9.figshare.1605597.v1
title: How do general practitioners use ‘safety netting’ in acutely ill children?

description: <b>Background</b>: ‘Safety netting’ advice allows general practitioners (GPs) to cope with diagnostic uncertainty in primary care. It informs patients on ‘red flag’ features and when and how to seek further help. There is, however, insufficient evidence to support useful choices regarding ‘safety netting’ procedures. <b>Objectives</b>: To explore how GPs apply ‘safety netting’ in acutely ill children in Flanders. <b>Methods</b>: We designed a qualitative study consisting of semi-structured interviews with 37 GPs across Flanders. Two researchers performed qualitative analysis based on grounded theory components. <b>Results</b>: Although unfamiliar with the term, GPs perform ‘safety netting’ in every acutely ill child, guided by their intuition without the use of specific guidelines. They communicate ‘red flag’ features, expected time course of illness and how and when to re-consult and try to tailor their advice to the context, patient and specific illness. Overall, GPs perceive ‘safety netting’ as an important element of the consultation, acknowledging personal and parental limitations, such as parents’ interpretation of their advice. GPs do not feel a need for any form of support in the near future. <b>Conclusion</b>: GPs apply ‘safety netting’ intuitively and tailor the content. Further research should focus on the impact of ‘safety netting’ on morbidity and how the advice is conveyed to parents.
DOI: 10.6084/m9.figshare.1605574
title: IntactEye Matlab program

description: Source code corresponding to the Hjorth et al. (2015) manuscript to appear in BMC Neuroscience (with the tentative DOI 10.1186/s12868-015-0217-8 .
DOI: 10.6084/m9.figshare.1605575
title: Gaussian Job Archive for C6H18O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1605575.v1
title: Gaussian Job Archive for C6H18O7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1605594
title: Combined LM and SEM study of the middle Miocene (Sarmatian) palynoflora from the Lavanttal Basin, Austria: part IV. Magnoliophyta 2 – Fagales to Rosales

description: An ongoing investigation of the middle Miocene (Sarmatian) palynoflora from the Lavanttal Basin continues to show that it contains an extremely rich assemblage of angiosperm taxa. The Fagales to Rosales pollen record documented here contains 34 different taxa belonging to the Betulaceae (<i>Alnus, Betula, Carpinus, Corylus, Ostrya</i>), Fagaceae (<i>Castanea, Fagus, Quercus</i> Groups Cerris, Ilex, Cyclobalanopsis, Quercus/Lobatae), Juglandaceae (Engelhardioideae, <i>Carya, Juglans, Pterocarya</i>), Myricaceae (<i>Morrella vel Myrica</i>), Cannabaceae (<i>Celtis</i>), Elaeagnaceae (<i>Elaeagnus</i>), Rhamnaceae, Rosaceae (<i>Prunus</i>) and Ulmaceae (<i>Cedrelospermum, Ulmus, Zelkova</i>). Two of the pollen types represent extinct genera, <i>Trigonobalanopsis</i> and <i>Cedrelospermum</i>, and are also reported for the first time from the Lavanttal Basin along with pollen of Rhamnaceae and <i>Prunus</i>. The different types of <i>Quercus</i> pollen are now affiliated with Groups Cerris, Cyclobalanopsis, Ilex and Quercus/Lobatae based on sculpturing elements observed using scanning electron microscopy (SEM). Köppen signatures of potential modern analogues of the fossil Fagales and Rosales suggest a subtropical (<i>Cfa, Cwa</i>) climate at lower elevation and subsequent subtropical to temperate climate with altitudinal succession (<i>Cfa</i> → <i>Cfb</i>/<i>Dfa</i>→ <i>Dfb; Cwa</i> → <i>Cwb</i> → <i>Dwb</i>) in the Lavanttal area during accumulation of the palynoflora. Most of the fossil taxa have potential modern analogues that can be grouped as nemoral and/or merido-nemoral vegetation elements, and the diversity of Fagales indicates a varying landscape with a high variety of niches.
DOI: 10.6084/m9.figshare.1605594.v1
title: Combined LM and SEM study of the middle Miocene (Sarmatian) palynoflora from the Lavanttal Basin, Austria: part IV. Magnoliophyta 2 – Fagales to Rosales

description: An ongoing investigation of the middle Miocene (Sarmatian) palynoflora from the Lavanttal Basin continues to show that it contains an extremely rich assemblage of angiosperm taxa. The Fagales to Rosales pollen record documented here contains 34 different taxa belonging to the Betulaceae (<i>Alnus, Betula, Carpinus, Corylus, Ostrya</i>), Fagaceae (<i>Castanea, Fagus, Quercus</i> Groups Cerris, Ilex, Cyclobalanopsis, Quercus/Lobatae), Juglandaceae (Engelhardioideae, <i>Carya, Juglans, Pterocarya</i>), Myricaceae (<i>Morrella vel Myrica</i>), Cannabaceae (<i>Celtis</i>), Elaeagnaceae (<i>Elaeagnus</i>), Rhamnaceae, Rosaceae (<i>Prunus</i>) and Ulmaceae (<i>Cedrelospermum, Ulmus, Zelkova</i>). Two of the pollen types represent extinct genera, <i>Trigonobalanopsis</i> and <i>Cedrelospermum</i>, and are also reported for the first time from the Lavanttal Basin along with pollen of Rhamnaceae and <i>Prunus</i>. The different types of <i>Quercus</i> pollen are now affiliated with Groups Cerris, Cyclobalanopsis, Ilex and Quercus/Lobatae based on sculpturing elements observed using scanning electron microscopy (SEM). Köppen signatures of potential modern analogues of the fossil Fagales and Rosales suggest a subtropical (<i>Cfa, Cwa</i>) climate at lower elevation and subsequent subtropical to temperate climate with altitudinal succession (<i>Cfa</i> → <i>Cfb</i>/<i>Dfa</i>→ <i>Dfb; Cwa</i> → <i>Cwb</i> → <i>Dwb</i>) in the Lavanttal area during accumulation of the palynoflora. Most of the fossil taxa have potential modern analogues that can be grouped as nemoral and/or merido-nemoral vegetation elements, and the diversity of Fagales indicates a varying landscape with a high variety of niches.
DOI: 10.6084/m9.figshare.1605574.v2
title: IntactEye Matlab program

description: Source code corresponding to the Hjorth et al. (2015) manuscript to appear in BMC Neuroscience (with the tentative DOI 10.1186/s12868-015-0217-8 .
DOI: 10.6084/m9.figshare.1605569
title: T cells Viability

description: Manuscript 1 figure 7
DOI: 10.6084/m9.figshare.1605574.v1
title: Intact Eye Matlab program

description: Source code corresponding to the Hjorth et al. (2015) manuscript to appear in BMC Neuroscience (with the tentative DOI 10.1186/s12868-015-0217-8 .
DOI: 10.6084/m9.figshare.1605353
title: Dendritic cells Colour 1

description: Manuscript 1 Fig 2-4
DOI: 10.6084/m9.figshare.1605452
title: Dendritic cells Colour 2

description: Dendritic cells Colour 2. Manuscript 1 figure 2-4.
DOI: 10.6084/m9.figshare.1605569.v1
title: T cells Viability

description: Manuscript 1 figure 7
DOI: 10.6084/m9.figshare.1605353.v1
title: Dendritic cells Colour 1

description: Manuscript 1 Fig 2-4
DOI: 10.6084/m9.figshare.1605452.v1
title: Dendritic cells Colour 2

description: Dendritic cells Colour 2. Manuscript 1 figure 2-4.
DOI: 10.6084/m9.figshare.1605200
title: T cells activation Colour 1

description: Manuscript 1 Figure 6.
DOI: 10.6084/m9.figshare.1605200.v1
title: T cells activation Colour 1

description: Manuscript 1 Figure 6.
DOI: 10.6084/m9.figshare.1605222
title: T cells activation Colour 2

description: Manuscript 1 figure 6
DOI: 10.6084/m9.figshare.1604962
title: Flow and temperature data for Wobus et al., 10.1371/journal.pone.0143905

description: Stream Flow files (*_HD.xlsx): 10-year, daily instantaneous modeled discharge in m3/s for each of the 546 flow nodes in the model domain. Tab “coordinates” has X,Y coordinates of each node in Alaska State Plane meters. Stream Temperature files (*.csv): 10-year, 6-hourly instantaneous modeled temperature in degrees C for each of the 1136 temperature nodes in the model domain. Columns correspond to headers in file Headers_AllSites_noSpaces.xlsx, and rows correspond to timesteps in file NewModels_Date_Time.csv (as Excel-formatted numeric date values). X,Y coordinates of temperature nodes are in file tnodes_coordinates_noSpaces.xlsx
DOI: 10.6084/m9.figshare.1604968
title: Gaussian Job Archive for C6H20O8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1605222.v1
title: T cells activation Colour 2

description: Manuscript 1 figure 6
DOI: 10.6084/m9.figshare.1604948
title: Supporting Data List of Files with doi

description: This document contains the list of supporting documents and the corresponding doi.
DOI: 10.6084/m9.figshare.1604967
title: Gaussian Job Archive for C6H20O8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1604968.v1
title: Gaussian Job Archive for C6H20O8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1604962.v1
title: Flow and temperature data for Wobus et al., 10.1371/journal.pone.0143905

description: Stream Flow files (*_HD.xlsx): 10-year, daily instantaneous modeled discharge in m3/s for each of the 546 flow nodes in the model domain. Tab “coordinates” has X,Y coordinates of each node in Alaska State Plane meters. Stream Temperature files (*.csv): 10-year, 6-hourly instantaneous modeled temperature in degrees C for each of the 1136 temperature nodes in the model domain. Columns correspond to headers in file Headers_AllSites_noSpaces.xlsx, and rows correspond to timesteps in file NewModels_Date_Time.csv (as Excel-formatted numeric date values). X,Y coordinates of temperature nodes are in file tnodes_coordinates_noSpaces.xlsx
DOI: 10.6084/m9.figshare.1604967.v1
title: Gaussian Job Archive for C6H20O8

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1604940
title: Subsidence-driven environmental change in three Holocene embayments of Ahuriri Inlet, Hikurangi Subduction Margin, New Zealand

description: Three paleo-embayments on the southwest side of the uplifted Ahuriri Inlet, Hawkes Bay, contain complex interfingering sequences of Holocene terrestrial and saltmarsh peat and intertidal shelly sand and mud. We use 295 foraminiferal samples from 45 short cores (up to 8 m deep) to reconstruct the paleoenvironmental history of the bays. We infer that the strongest influence on their paleoenvironmental history was 8–10 m of net tectonic subsidence since 7.3 ka, which provided the accommodation space for sediment deposition prior to the c. 1.5 m of uplift in the AD 1931 Hawkes Bay Earthquake. Much of the subsidence appears to have occurred in eight large co-seismic events (0.4–2 kyr recurrence time) which caused marine transgressions of varying amounts into each bay. Sea-level changes (eustatic and isostatic) have been a secondary driver over the middle–late Holocene with an interval (c. 2.6–1.7 ka) of widespread erosion or slow sedimentation, caused by a sea-level fall of c. 1 m following the middle Holocene highstand. The interval of fastest sedimentation and maximum marine transgression occurred within the last 1 kyr and was driven by increased tectonic subsidence, rising sea level and enhanced compaction of thicker sequences of Holocene sediment, particularly peat. The supply of fluvial mud and cliff-eroded sand was the main, relatively constant source of clastic sediment. Airfall and reworking of three pumiceous tephras had a minimal impact on the paleoenvironments of the bays.
DOI: 10.6084/m9.figshare.1604940.v1
title: Subsidence-driven environmental change in three Holocene embayments of Ahuriri Inlet, Hikurangi Subduction Margin, New Zealand

description: Three paleo-embayments on the southwest side of the uplifted Ahuriri Inlet, Hawkes Bay, contain complex interfingering sequences of Holocene terrestrial and saltmarsh peat and intertidal shelly sand and mud. We use 295 foraminiferal samples from 45 short cores (up to 8 m deep) to reconstruct the paleoenvironmental history of the bays. We infer that the strongest influence on their paleoenvironmental history was 8–10 m of net tectonic subsidence since 7.3 ka, which provided the accommodation space for sediment deposition prior to the c. 1.5 m of uplift in the AD 1931 Hawkes Bay Earthquake. Much of the subsidence appears to have occurred in eight large co-seismic events (0.4–2 kyr recurrence time) which caused marine transgressions of varying amounts into each bay. Sea-level changes (eustatic and isostatic) have been a secondary driver over the middle–late Holocene with an interval (c. 2.6–1.7 ka) of widespread erosion or slow sedimentation, caused by a sea-level fall of c. 1 m following the middle Holocene highstand. The interval of fastest sedimentation and maximum marine transgression occurred within the last 1 kyr and was driven by increased tectonic subsidence, rising sea level and enhanced compaction of thicker sequences of Holocene sediment, particularly peat. The supply of fluvial mud and cliff-eroded sand was the main, relatively constant source of clastic sediment. Airfall and reworking of three pumiceous tephras had a minimal impact on the paleoenvironments of the bays.
DOI: 10.6084/m9.figshare.1604948.v2
title: Supporting Data List of Files with doi

description: This document contains the list of supporting documents and the corresponding doi.
DOI: 10.6084/m9.figshare.1604936
title: An Augmented ADMM Algorithm With Application to the Generalized Lasso Problem

description: In this article, we present a fast and stable algorithm for solving a class of optimization problems that arise in many statistical estimation procedures, such as <i>sparse fused lasso over a graph</i>, <i>convex clustering</i>, and <i>trend filtering</i>, among others. We propose a so-called augmented <i>alternating direction methods of multipliers</i> (ADMM) algorithm to solve this class of problems. Compared to a standard ADMM algorithm, our proposal significantly reduces the computational cost at each iteration while maintaining roughly the same overall convergence speed. We also consider a new varying penalty scheme for the ADMM algorithm, which could further accelerate the convergence, especially when solving a sequence of problems with tuning parameters of different scales. Extensive numerical experiments on the sparse fused lasso problem show that the proposed algorithm is more efficient than the standard ADMM and two other existing state-of-the-art specialized algorithms. Finally, we discuss a possible extension and some interesting connections to two well-known algorithms. Supplementary materials for the article are available online.
DOI: 10.6084/m9.figshare.1604937
title: Insights into the Neotropics prior to the Great American Biotic Interchange: new evidence of mammalian predators from the Miocene of Northern Colombia

description: A new species of Sparassodonta (Mammalia, Metatheria), <i>Lycopsis padillai</i>, sp. nov., is described on the basis of a partial left maxilla with M1–M4 and fragments of lacrimal and jugal. The material comes from the early to early middle Miocene Castilletes Formation, La Guajira Peninsula, Colombia. This specimen represents the northernmost record of a fossil metatherian in South America and integrates a highly diverse vertebrate association, recently discovered in the north of Colombia. The La Guajira specimen is referred to the genus <i>Lycopsis</i>, as supported by the results of our phylogenetic analysis. This analysis also demonstrates that species of <i>Lycopsis</i> (<i>L. torresi</i>, <i>L. longirostrus</i>, <i>L. viverensis</i>, and <i>L. padillai</i>) constitute a monophyletic group and are placed as the basal taxon of Borhyaenoidea. <i>Lycopsis padillai</i> is a large-sized sparassodont with a body mass of about 22 kg. The presence of <i>Lycopsis</i> from La Guajira extends the geographical distribution of the genus to the entire South America, representing the sparassodont with the widest latitudinal distribution. http://zoobank.org/urn:lsid:zoobank.org:pub:B3127EDAB4BB-4972-81B9-4447CC44EE79 SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Suarez, C., A. M. Forasiepi, F. J. Goin, and C. Jaramillo. 2015. Insights into the Neotropics prior to the Great American Biotic Interchange: new evidence of mammalian predators from the Miocene of Northern Colombia. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2015.1029581.
DOI: 10.6084/m9.figshare.1604948.v1
title: Supporting Data List of Files with doi

description: This document contains the list of supporting documents and the corresponding doi.