cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1066932
title: Virtual Chip-Seq Predictions Of Binding Of 34 Transcription Factor In Roadmap Epigenomics Project Tissues

description: This dataset contains predictions of Virtual ChIP-seq for binding of 34 transcription factors in Roadmap Epigenomics dataset tissues with matched DNase-seq and RNA-seq data.

Tarball contains subfolders for each of the 34 TFs where Virtual ChIP-seq median MCC in validation cell types was &gt; 0.3.

Each subfolder contains gzipped BED files. Each file is named as &lt;Tissue&gt;_&lt;Age&gt;_&lt;TF&gt;_&lt;Accession&gt;_Predictions.bed.gz. Columns correspond to Chromosome, Start, End, &lt;Tissue&gt;_&lt;Age&gt;_&lt;TF&gt;_&lt;Accession&gt;, Posterior probability

You can use the posterior probabilities provided in Virchip_PosteriorCutoffs.tsv. These are posterior probability cutoffs which maximized MCC in H1-hESC cell type, or are set to 0.4 if there was no ChIP-seq data of that TF in H1-hESC (0.4 is the mode of all optimal posterior probability cutoffs in H1-hESC).
DOI: 10.5281/zenodo.164027
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.22021/bbldntz201709
title: The Linked Open British National Bibliography – Books. 1950/2017-09 – N-Triples
DOI: 10.22021/bbldrdfz201709
title: The Linked Open British National Bibliography – Books. 1950/2017-09 – RDF/XML
DOI: 10.22021/bsldntz201709
title: The Linked Open British National Bibliography – Serials. 1950/2017-09 – N-Triples
DOI: 10.22021/bsldrdfz201709
title: The Linked Open British National Bibliography – Serials. 1950/2017-09 – RDF/XML
DOI: 10.25678/000088
title: E. coli in handwashing water and hands (Harare, Zimbabwe)

description: Paired samples of the concentration of E. coli in handwashing water sources and on the hands of volunteers (before and after handwashing) from Harare, Zimbabwe.  The data are primary data collected, analyzed, and reported as described in: Navab-Daneshmand, T., Friedrich, M. N., Gächter, M., Montealegre, M. C., Mlambo, L. S., Nhiwatiwa, T., Mosler, H.-J., Julian, T. R. (2018). Escherichia coli Contamination across Multiple Environmental Compartments (Soil, Hands, Drinking Water, and Handwashing Water) in Urban Harare: Correlations and Risk Factors. The American Journal of Tropical Medicine and Hygiene, 98(3), 803, [https://doi.org/10.4269/ajtmh.17-0521](https://doi.org/10.4269/ajtmh.17-0521)
DOI: 10.25678/000099
title: Transfer of bacteriophages between the
    fingers of volunteers and water or saliva

description: Data sets
    on the percentage of virus transferred between fingers and
    water or saliva. Transfer with saliva is for both wet hands
    (where the virus inoculum was not allowed to appreciably dry
    before transfer) and for dry hands (where the virus inoculum
    was allowed to dry before transfer). 
    
    The data were collected, analyzed, and reported within
    the following publication:
    
    Pitol, A. K., Bischel, H. N., Kohn, T., & Julian, T.
    R. (2017). Virus Transfer at the Skin-Liquid Interface.
    Environmental Science & Technology, 51(24), 14417-14425.
    [https://doi.org/10.1021/acs.est.7b04949](https://doi.org/10.1021/acs.est.7b04949)
DOI: 10.25678/10.25678/000099
title: Transfer of bacteriophages between the
    fingers of volunteers and water or saliva

description: Data sets
    on the percentage of virus transferred between fingers and
    water or saliva. Transfer with saliva is for both wet hands
    (where the virus inoculum was not allowed to appreciably dry
    before transfer) and for dry hands (where the virus inoculum
    was allowed to dry before transfer). 
    
    The data were collected, analyzed, and reported within
    the following publication:
    
    Pitol, A. K., Bischel, H. N., Kohn, T., & Julian, T.
    R. (2017). Virus Transfer at the Skin-Liquid Interface.
    Environmental Science & Technology, 51(24), 14417-14425.
    [https://doi.org/10.1021/acs.est.7b04949](https://doi.org/10.1021/acs.est.7b04949)
DOI: 10.5281/zenodo.1188307
title: Virtual Chip-Seq Predictions For Tf Binding In Cistrome And Encode-Dream Datasets

description: Each gzipped tarball contains BED files of Virtual ChIP-seq posterior probabilities.

Each BED file corresponds to binding of a TF in one chromosome in a validation cell type of Cistrome (virchipCistromePredictions_V1.0.0.tar.gz) or ENCODE-DREAM Challenge datasets (virchipDreamPredictions_V1.0.0.tar.gz).
DOI: 10.5281/zenodo.1188308
title: Virtual Chip-Seq Predictions For Tf Binding In Cistrome And Encode-Dream Datasets

description: Each gzipped tarball contains BED files of Virtual ChIP-seq posterior probabilities.

Each BED file corresponds to binding of a TF in one chromosome in a validation cell type of Cistrome (virchipCistromePredictions_V1.0.0.tar.gz) or ENCODE-DREAM Challenge datasets (virchipDreamPredictions_V1.0.0.tar.gz).
DOI: 10.5281/zenodo.1188446
title: Conversiontest

description: Results from tool executed using PubRunner on MEDLINE corpus.
DOI: 10.22021/bcldntz201709
title: The Linked Open British National Bibliography – Forthcoming Books. 2017-09 – N-Triples
DOI: 10.22021/bcldrdfz201709
title: The Linked Open British National Bibliography – Forthcoming Books. 2017-09 – RDF/XML
DOI: 10.5281/zenodo.1188447
title: Conversiontest

description: Results from tool executed using PubRunner on MEDLINE corpus.
DOI: 10.5281/zenodo.1455759
title: Virtual Chip-Seq Predictions Of Binding Of 36 Transcription Factor In Roadmap Epigenomics Project Tissues

description: This dataset contains predictions of Virtual ChIP-seq for binding of 36 transcription factors in Roadmap Epigenomics dataset tissues with matched DNase-seq and RNA-seq data.

Tarball contains subfolders for each of the 36 TFs where Virtual ChIP-seq median MCC in validation cell types was &gt; 0.3.

Each subfolder contains gzipped BED files. Each file is named as &lt;Tissue&gt;_&lt;Age&gt;_&lt;TF&gt;_&lt;Accession&gt;_Predictions.bed.gz. Columns correspond to Chromosome, Start, End, &lt;Tissue&gt;_&lt;Age&gt;_&lt;TF&gt;_&lt;Accession&gt;, Posterior probability

You can use the posterior probabilities provided in Virchip_PosteriorCutoffs_V3.0.0.tsv. These are posterior probability cutoffs which maximized MCC in H1-hESC cell type, or are set to 0.4 if there was no ChIP-seq data of that TF in H1-hESC (0.4 is the mode of all optimal posterior probability cutoffs in H1-hESC).
DOI: 10.5281/zenodo.1458287
title: Mpc Master Data List

description: List of data sources used/required by MPC packages
DOI: 10.5281/zenodo.1458288
title: Mpc Master Data List

description: List of data sources used/required by MPC packages
DOI: 10.5281/zenodo.806814
title: A Collection Of Novice Interactions With The Ocaml Top-Level System

description: See the included README.md for details on the file format.
DOI: 10.5281/zenodo.998042
title: Openaire Fp7 Post-Grant Open Access Pilot: Datasets And Reporting

description: This dataset contains all data related to the publications funded within the OpenAIRE FP7 Post-Grant Open Access Pilot in the two first years of its run, from May 2015 until April 30, 2017. The Pilot has received an extension of 10 months. This dataset will receive an update after the Pilot has come to a definitive end (February 2018).The Pilot website can be found at : https://postgrantoapilot.openaire.euTo be eligible, a publication needed to comply with the following conditions: Part of FP7 project that has ended, but no longer than two years ago at the moment of acceptance of publication Published in an Open Access Journal - we do not accept publications in so-called hybrid journals, which are journals that make individual articles Open Access but remain subscription based as a whole Maximum 3 publications per projectFunding cap is € 2000 for articles and € 6000 for monographs. Some author fees exceed this cap slightly due to currency conversion<br>
Any anomalies in this dataset are to be ascribed to human error. Some adjustments might have been made on accounting level that are not reflected in this dataset. <br>
This dataset is available under  CC0 (https://creativecommons.org/publicdomain/zero/1.0/), which means that it is dedicated to the public domain. You are free to  copy, modify and distribute this dataset, even for commercial purposes, all without asking permission. Although it is not obliged, a credit to the OpenAIRE project is appreciated. At the OpenAIRE project, we are very interested in hearing how you have used this dataset. Feel free to ping us when you make use of it. <br>
author: Gwen Franck  gwen.franck@kb.nlOpenAIRE on Twitter @openaire_euinfo@openaire.eu
description: This dataset is related to OpenAIRE WP5 D5.4 (doi:10.5281/zenodo.998709)
DOI: 10.5281/zenodo.810169
title: Qqqq

description: qqqqq
DOI: 10.5281/zenodo.810170
title: Qqqq

description: qqqqq
DOI: 10.13012/b2idb-2059727_v1
title: Pollen types from Haselhorst et al. (2017) Ecological Informatics: Table S1. Pollen types identified in the BCI and PNSL pollen rain data sets

description: Table S1. Pollen types identified in the BCI and PNSL pollen rain data sets. Pollen types were identified to species when possible and assigned a life form based on descriptions provided in Croat, T.B. (1978). Taxa from BCI and PNSL were assigned a 1 if present in forest census data or a 0 if absent. The relative representation of each taxon has been provided for each extended record and by dry and wet season representation respectively. CA loadings are provided for axes 1 and 2 (Fig. 1).
DOI: 10.13012/b2idb-7821127_v1
title: Model results from Haselhorst et al. (2017) Ecological Informatics: Table S3. Mean slope response for each predictive model used in the ecoinformatic analysis

description: Table S3. Mean slope response for each predictive model used in the ecoinformatic analysis. Mean responses are provided for each seasonal and annual pollen data set analyzed from BCI and PNSL and are summarized by life form. Calculated p-values are provided for each model.
DOI: 10.13012/b2idb-8658584_v1
title: Pollen and climate data from Haselhorst et al. (2017) Ecological Informatics: Table S2. Raw pollen counts and climatic data for each seasonal sampling period

description: Table S2. Raw pollen counts and climatic data for each seasonal sampling period. Climatic data reflects the average daily conditions observed over the duration samples were collected (˚C/day, mm/day, MJ/m2/day). Lycopodium counts and counts for each pollen taxon reflect the aggregated pollen sum from four sampling heights.
DOI: 10.5281/zenodo.806810
title: Github Open Source Survey 2017

description: Data and accompanying documentation for the Open Source Survey fielded by GitHub and collaborators in 2017. Respondents were sourced via random sampling from traffic to licensed open source repositories on GitHub.com and from invitations sent to selected open source communities that work on other platforms. The files here include a README, a full copy of the (English) questionnaire, notes for working with the data, and two CSV data files. A report based on the subset of responses sampled from GitHub.com is available at http://opensourcesurvey.org/2017/. 

See the README for details on sampling methodology, and notes and questionnaire files for question wordings, response options, branching logic, and recoded variables.
DOI: 10.13012/b2idb-1882247_v1
title: Wetland compensation and its impacts on β-diversity

description: This is the dataset used in the Ecological Applications publication of the same name.  This dataset consists of the following files:

Internal.Community.Data.txt
Regional.Community.Data.txt
Site.Attributes.txt
Year.Of.Final.Bio.Monitoring.txt

Internal.Community.Data.txt is a site and plot by species matrix.  Column labeled SITE consists of site IDs.  Column labeled Plot consists of Plot numbers.  All other columns represent species relative abundances per plot.

Regional.Community.Data.txt is a site by species matrix of relative abundances.  Column labeled site consists of site IDs.  All other columns represent species relative abundances per site.

Site.attributes.txt is a matrix of site attributes.  Column labeled SITE consists of site IDs.  Column labeled Long represents longitude in decimal degrees.  Column labeled Lat represents latitude in decimal degrees.  Column labeled Richness represents species richness of sites calculated from Regional Community Data.  Column labeled NAT_COMP_REST represents designation as a randomly selected natural wetland (NAT), compensation wetland (COMP) or reference quality natural wetland (REF).
Column labeled HQ_LQ_COMP represents designation as high quality (HQ), low quality (LQ) or compensation wetland (COMP).  Column labeled SAMPLING_YEAR_INTERNAL represents year data used for analysis of internal β-diversity was gathered.  Column labeled SAMPLING_YEAR_REGIONAL represents year data used for analysis of regional β-diversity was gathered.  Column labeled TRANSECT_LENGTH represents length in meters of initial sampling transect.  INAI_GRADE represents Illinois Natural Areas Inventory grades assigned to each site.  Grades range from A for highest quality natural areas to E for lowest quality natural areas.

Year.Of.Final.Bio.Monitoring.txt is a table representing years of final monitoring of compensation wetlands as mandated by the US Army Corps of Engineers.  Column labeled Site consists of site IDs.  Column labeled YR_FIN_BIO_MON consists of years of final monitoring.  Entries of N/A represent dates that were unable to be located.

More information about this dataset:  Interested parties can request data from the Critical Trends Assessment Program, which was the source for data on naturally occurring wetlands in this study.  More information on the program and data requests can be obtained by visiting the program webpage.  Critical Trends Assessment Program, Illinois Natural History Survey.  http://wwx.inhs.illinois.edu/research/ctap/
DOI: 10.5281/zenodo.632831
title: Lipschitz Quaternions In The Range [−10, 10]^4, Which Induce Bijective 3D Digitized Rotations

description: The file contains Lipschitz quaternions in the range [−10, 10]^4, such that they induce bijective 3D digitized rotations. It is a comma-separated values file format such that each line contains a different quaternion.
DOI: 10.5281/zenodo.814552
title: Lipschitz Quaternions In The Range [−10, 10]^4, Which Induce Bijective 3D Digitized Rotations

description: The file contains Lipschitz quaternions in the range [−10, 10]^4, such that they induce bijective 3D digitized rotations. It is a comma-separated values file format such that each line contains a different quaternion. This is an updated version which contains 576 more quaternions with respect to the previous version. These 576 quaternions where previously certified as ones which do not lead to bijective digitized rotations due to a bug in the used implementation of the algorithm described in:

Pluta K., Romon P., Kenmochi Y., Passat N. (2016) Bijectivity Certification of 3D Digitized Rotations. In: Bac A., Mari JL. (eds) Computational Topology in Image Context. CTIC 2016. Lecture Notes in Computer Science, vol 9667. Springer, pp 30-41, doi:10.1007/978-3-319-39441-1_4

 

<strong>Acknowledgements:</strong><br>
Special thanks for Victor Ostromoukhov and  David Cœurjolly of University of Lyon 1, LIRIS, France, for finding the bug.
DOI: 10.26030/782w-7k77
title: The influence of simulated microgravity on the proteome of Daphnia magna

description: Background/Objectives: The waterflea Daphnia is an interesting candidate for bioregenerative life support systems (BLSS). These animals are particularly promising because of their central role in the limnic food web and its mode of reproduction. However, the response of Daphnia to altered gravity conditions has to be investigated, especially on the molecular level, to evaluate the suitability of Daphnia for BLSS in space. Methods: In this study, we applied a proteomic approach to identify key proteins and pathways involved in the response of Daphnia to simulated microgravity generated by a 2D-clinostat. We analysed 5 biological replicates using 2D-DIGE proteomic analysis. Results: We identified 109 protein spots differing in intensity (p less than 0.05). Substantial fractions of these proteins are involved in actin microfilament organisation, indicating the disruption of cytoskeletal structures during clinorotation. Furthermore, proteins involved in protein folding were identified, suggesting altered gravity induced breakdown of protein structures in general. In addition, simulated microgravity increased the abundance of energy metabolism related proteins, indicating an enhanced energy demand of Daphnia. Conclusion: The affected biological processes were also described in other studies using different organisms and systems either aiming to simulate microgravity conditions or providing real microgravity conditions. Moreover, most of the Daphnia protein sequences are well conserved throughout taxa, indicating that the response to altered gravity conditions in Daphnia follows a general concept.
DOI: 10.15468/dl.rwaf5g
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Callosobruchus maculatus (Fabricius, 1775)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 68 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082509-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13368076
title: Clustering metrics over multiple configuration of the BERTopic pipeline for two datasets.
DOI: 10.5281/zenodo.13368077
title: Clustering metrics over multiple configuration of the BERTopic pipeline for two datasets.
DOI: 10.15468/dl.yhvyb8
title: Occurrence Download

description: A dataset containing 2375 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Tritomegas sexmaculatus (Rambur, 1839)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 2375 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082510-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9235088
title: Student Mental
DOI: 10.15468/dl.nrkn77
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Callosobruchus maculatus (Fabricius, 1775)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 68 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082511-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9b5aww
title: Occurrence Download

description: A dataset containing 61417 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia melanoxylon R.Br."
 ]
}

 The dataset includes 61417 records from 359 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082508-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4u4yb8
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Material citation)",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus salicifolia Née"
 ]
}

 The dataset includes 26 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082513-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvjpbe
title: Occurrence Download

description: A dataset containing 17100 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Eurygaster testudinaria (Geoffroy, 1785)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 17100 records from 266 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082512-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6c8me
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Belize",
 "DatasetKey is Tropicos Specimens Non-MO",
 "OccurrenceStatus is Present",
 "TaxonKey is Chiangiodendron mexicanum T.Wendt"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082515-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgzhkz
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Callosobruchus maculatus (Fabricius, 1775)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 68 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082516-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.575ycp
title: Occurrence Download

description: A dataset containing 7902 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia baileyana F.Muell."
 ]
}

 The dataset includes 7902 records from 201 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082517-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3xptc
title: Occurrence Download

description: A dataset containing 1608 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Eurygaster austriaca (Schrank, 1776)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1608 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082518-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.