cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29313707.v1
title: Mitigation of chytridiomycosis on <i>Bombina variegata</i> tadpoles with the antimicrobial metabolites of the bacterium <i>Xenorhabdus szentirmaii</i>

description: Survival of amphibian assemblages is threatened by many factors. Among them, chytridiomycosis, the disease caused by the chytrid fungus <i>Batrachochytrium dendrobatidis</i> (Bd) has great importance, also threatening populations of the yellow-bellied toad (<i>Bombina variegata</i>), which has a scattered, isolated distribution in Hungary. Treatment with secondary metabolites of the entomopathogenic bacterium <i>Xenorhabdus szentirmaii</i> is a promising method in the mitigation of chytridiomycosis, as recently demonstrated. To assess whether it may also be effective for lowering infection intensities in <i>B. variegata</i> tadpoles, we extracted cell-free culture media (CFCM) from liquid cultures of <i>X. szentirmaii</i> and tested their antifungal efficacy at a dilution of 0.1 % (v/v), while also measuring possible short-term malign effects on tadpoles experimentally infected with Bd or sham infection. According to our results, CFCM treatment alone did not compromise tadpoles’ survival probability, nor reduce the body mass and developmental rate of the individuals. At the same time, the treatment reduced the intensity and prevalence of Bd infection, but only in the case of one population out of the four tested. The antimicrobial metabolites produced by <i>X. szentirmaii</i> may therefore be suitable for the safe mitigation of chytridiomycosis in <i>B. variegata</i> tadpoles, but further studies are needed, aiming to validate and increase the efficacy of this method.
DOI: 10.5281/zenodo.15772214
title: Brain Map data
DOI: 10.5281/zenodo.15772215
title: Brain Map data
DOI: 10.15468/dl.vfxuhf
title: Occurrence Download

description: A dataset containing 1625 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bilans des saisons de capture par la Fédération Départementale des Groupements de Défense contre les Organismes Nuisibles des Landes (FDGDON 40)-Données d'espèces exotiques piégées"
 ]
}

 The dataset includes 1625 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080215-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6p2kh
title: Occurrence Download

description: A dataset containing 14700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is one of (CHN.31_1, CHN.24_1, CHN.15_1, CHN.1_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Egretta garzetta (Linnaeus, 1766), Saundersilarus saundersi (Swinhoe, 1871))"
 ]
}

 The dataset includes 14700 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080216-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e207641v1-184122
title: Data and code for 'In Harm's Way? Infrastructure Investments and the Persistence of Coastal Cities'

description: Data and code for 'In Harm's Way? Infrastructure Investments and the Persistence of Coastal Cities'
DOI: 10.15468/dl.vyga8q
title: Occurrence Download

description: A dataset containing 21579 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chamaerops humilis L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 21579 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080217-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e207641v1-184121
title: Data and code for 'In Harm's Way? Infrastructure Investments and the Persistence of Coastal Cities'

description: Data and code for 'In Harm's Way? Infrastructure Investments and the Persistence of Coastal Cities'
DOI: 10.6084/m9.figshare.28309352
title: Sundin et al. Correction factor for eel after shrinkage from freezing and ethanol

description: Raw-data and code for results presented in the paper:A correcting factor for the reduction of body length and mass of European eel after ethanol preservation and after freezingBy authors: Josefin Sundin, John Persson, Stefan Skoglund
DOI: 10.6084/m9.figshare.28309352.v1
title: Sundin et al. Correction factor for eel after shrinkage from freezing and ethanol

description: Raw-data and code for results presented in the paper:A correcting factor for the reduction of body length and mass of European eel after ethanol preservation and after freezingBy authors: Josefin Sundin, John Persson, Stefan Skoglund
DOI: 10.15468/dl.rttbrs
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ammopiptanthus mongolicus (Maxim. ex Kom.) S.H.Cheng"
 ]
}

 The dataset includes 130 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080220-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uecccr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia saligna (Labill.) H.L.Wendl.",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080221-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32b3uq
title: Occurrence Download

description: A dataset containing 515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia saligna (Labill.) H.L.Wendl.",
 "Country is Cyprus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 515 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080222-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhxb3u
title: Occurrence Download

description: A dataset containing 7895 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Pakistan",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acridotheres tristis (Linnaeus, 1766)",
 "Year 2000-2025"
 ]
}

 The dataset includes 7895 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080225-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mq3rmv
title: Occurrence Download

description: A dataset containing 11822 records in GBIF matching the query:
SELECT "year", "month", GBIF_EEARGCode(1000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000)) AS eeaCellCode, decimalLatitude, decimalLongitude, speciesKey, species, COUNT(*) AS occurrences FROM occurrence WHERE GBIF_Within('POLYGON ((4.743004 50.68406, 4.743004 50.877911, 4.171371 50.877911, 4.171371 50.68406, 4.743004 50.68406))', decimalLatitude, decimalLongitude)=TRUE AND hasCoordinate = TRUE AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND "year" IS NOT NULL AND "month" IS NOT NULL AND taxonKey IN (1002621,1003567,10071055,1007534,1008610,1008612,1008955,1010644,10108775,1013526,1014565,1016841,1017419,10269496,1031394,1031400,1031512,1031520,1031524,1031564,1031677,1031680,1031684,1031685,1031737,1031742,1031743,1032262,1032377,10329298,10411852,1043717,1043978,1045323,1047536,10545407,10578411,10629881,10646747,10676000,10701161,10730110,10755213,10773250,10786206,10797854,10800064,10801424,10852031,10857535,10902460,10920460,10933479,10937982,10944522,10948891,10953644,1095946,10966302,10972541,10986555,11007246,11055820,11064584,11104870,11107889,1111797,11136683,11141765,11162940,1119292,11205618,11335341,1133603,1152186,11528335,11794300,11844792,11921804,1194885,1194989,1195013,12132283,12187916,12205713,12218002,12246414,12254070,12262171,1247584,1276876,1309600,1309606,1309635,1309652,1311477,1313740,1314773,1316805,1316908,1319260,1320777,1321805,1322674,1323402,1325561,1326634,1342324,1346919,1349836,1371011,1411953,1419894,1420197,1420612,1420765,1420769,1420791,1420795,1420828,1420829,1420846,1420857,1421091,1421095,1421105,1422818,1423286,1450317,1521740,1523628,1548900,1551754,1577153,1579447,1622599,1622658,1623077,1623354,1626096,1650106,1651430,1652150,1652212,1683815,1690276,1690429,1702101,1707320,1713034,1714140,1718308,1719204,1720196,1722140,1722299,1728965,1737131,1749449,1749580,1751299,1795068,1829659,1830284,1830823,1835422,1852787,1852831,1865660,1866356,1873051,1873890,1873903,1885213,1886729,1891245,1910629,1932752,1941864,1971998,1995489,1995681,1997215,1998083,1998599,2000152,2000204,2007665,2008616,2010226,2012132,2020655,2020686,2020688,2020779,2020832,2020879,2029273,2029899,2037925,2037991,2038171,2041682,2047706,2049296) GROUP BY "year", "month", eeaCellCode, decimalLatitude, decimalLongitude, speciesKey, species

 The dataset's 11822 records were derived from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080202-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nq8d58
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia saligna (Labill.) H.L.Wendl.",
 "Country is Egypt",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080223-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29436188
title: RNA-seq data of liver tissue from control, model and drug-treated mice.

description: RNA-seq data of liver tissue from control, model and drug-treated mice. Each condition has four replications.
DOI: 10.6084/m9.figshare.29436188.v1
title: RNA-seq data of liver tissue from control, model and drug-treated mice.

description: RNA-seq data of liver tissue from control, model and drug-treated mice. Each condition has four replications.
DOI: 10.5281/zenodo.15194757
title: Software and data for "Advection versus diffusion in brain ventricular transport"

description: This repository contains the code, geometries and data used in the paper

 

Advection versus diffusion in brain ventricular transport

by Halvor Herlyng, Ada J. Ellingsrud, Miroslav Kuchta, Inyoung Jeong, Marie E. Rognes, Nathalie Jurisch-Yaksi.

 

The software (code, geometries and data) is licensed under an MIT License.

Contents of this repository:




src.zip
The source code of the model implementation presented in the paper, also available at https://github.com/hherlyng/zebrafish-cilia-csf.


geometries.zip


Computational mesh files (.xdmf format) and surface geometry (.stl) used to generate the ventricular meshes, as well as cylinder meshes used for numerical verification. 



data.zip
The photoconversion and particle tracking data referenced in the paper.


README.md
Readme file describing how to run the software.


LICENSE
The software license.


VideoS1.mp4
Supplementary Video S1 of the paper: A video of zebrafish brain ventricular CSF flow simulated with motile cilia and cardiac pulsatility. Initial view is lateral (xz-plane). Velocity vectors are scaled by magnitude, and colored by the magnitude signed with the x component, such that rostrocaudal flow is red and caudorostral flow is blue. The video spans 24 cardiac cycles at 22 fps rate (half of real-time). 


VideoS2.mp4
Supplementary Video S2 of the paper: Transport of secreted and photoconverted Dendra2 in the zebrafish ventricle. Dual color time-lapse confocal images show the location of unconverted (green) and converted (magenta) signals over time. Acquisition rate: 2.67s per frame. Photoconversion is performed from frame 11 to the end (frame 300).
DOI: 10.5281/zenodo.15772431
title: Software and data for "Advection versus diffusion in brain ventricular transport"

description: This repository contains the code, geometries and data used in the paper

 

Advection versus diffusion in brain ventricular transport

by Halvor Herlyng, Ada J. Ellingsrud, Miroslav Kuchta, Inyoung Jeong, Marie E. Rognes, Nathalie Jurisch-Yaksi.

 

The software (code, geometries and data) is licensed under an MIT License.

Contents of this repository:




src.zip
The source code of the model implementation presented in the paper, also available at https://github.com/hherlyng/zebrafish-cilia-csf.


geometries.zip


Computational mesh files (.xdmf format) and surface geometry (.stl) used to generate the ventricular meshes, as well as cylinder meshes used for numerical verification. 



data.zip
The photoconversion and particle tracking data referenced in the paper.


README.md
Readme file describing how to run the software.


LICENSE
The software license.


VideoS1.mp4
Supplementary Video S1 of the paper: A video of zebrafish brain ventricular CSF flow simulated with motile cilia and cardiac pulsatility. Initial view is lateral (xz-plane). Velocity vectors are scaled by magnitude, and colored by the magnitude signed with the x component, such that rostrocaudal flow is red and caudorostral flow is blue. The video spans 24 cardiac cycles at 22 fps rate (half of real-time). 


VideoS2.mp4
Supplementary Video S2 of the paper: Transport of secreted and photoconverted Dendra2 in the zebrafish ventricle. Dual color time-lapse confocal images show the location of unconverted (green) and converted (magenta) signals over time. Acquisition rate: 2.67s per frame. Photoconversion is performed from frame 11 to the end (frame 300).
DOI: 10.5281/zenodo.15601461
title: Dataset for High-temperature ultra-sensitive FET-based CVD graphene Hall probes.

description: Dataset for 'High-temperature ultra-sensitive FET-based CVD graphene Hall probes'

Individual files used for Figures 1-7 and Figure S1-S14 are assembled in the folders, including scripts for processing that were used.

Folder fig_1:        SEM images of the fabricated samplesFolder fig_2-4_6:    data from electronic measurements + Python scripts used for processing the dataFolder fig_5:        Raman spectroscopy measurements + Python scripts used for processing the dataFolder fig_7:        Python scripts containing calculations for the models

Folder fig_S1-S3:     Raman spectroscopy measurementsFolder fig_S5-S6:    data obtained from COMSOL simulationsFolder fig_S13:        SEM image, measurement dataFolder fig_S16-S18:    Python scripts containing calculations for the models

The files include:.tiff files (scanning electron microscopy images)

.txt files (raw data)Files from electronic measurement: individual columns are 'Time (s)', 'Main current [for some reason always writes 0 although it is not]', 'Gate (V)', 'Longitudinal voltage (V)', 'Transverse voltage (V)', 'Picoammeter [not used in these measurements]', 'Pt100 output (Ohm) [not in all measurement files, logging of this was added later]'Files from Raman mapping: each row contains the measured map from a single CCD pixel, the columns are the CCD counts measured in each spot of the map

.xlsxContains imported raw data from contact resistance measurement and some statistical calculations

.bmp (another SEM image)

.py files (python scripts used for processing of the .txt file - both electrical and Raman measurements - and for model calculations)
DOI: 10.5281/zenodo.15601462
title: Dataset for High-temperature ultra-sensitive FET-based CVD graphene Hall probes.

description: Dataset for 'High-temperature ultra-sensitive FET-based CVD graphene Hall probes'

Individual files used for Figures 1-7 and Figure S1-S14 are assembled in the folders, including scripts for processing that were used.

Folder fig_1:        SEM images of the fabricated samplesFolder fig_2-4_6:    data from electronic measurements + Python scripts used for processing the dataFolder fig_5:        Raman spectroscopy measurements + Python scripts used for processing the dataFolder fig_7:        Python scripts containing calculations for the models

Folder fig_S1-S3:     Raman spectroscopy measurementsFolder fig_S5-S6:    data obtained from COMSOL simulationsFolder fig_S13:        SEM image, measurement dataFolder fig_S16-S18:    Python scripts containing calculations for the models

The files include:.tiff files (scanning electron microscopy images)

.txt files (raw data)Files from electronic measurement: individual columns are 'Time (s)', 'Main current [for some reason always writes 0 although it is not]', 'Gate (V)', 'Longitudinal voltage (V)', 'Transverse voltage (V)', 'Picoammeter [not used in these measurements]', 'Pt100 output (Ohm) [not in all measurement files, logging of this was added later]'Files from Raman mapping: each row contains the measured map from a single CCD pixel, the columns are the CCD counts measured in each spot of the map

.xlsxContains imported raw data from contact resistance measurement and some statistical calculations

.bmp (another SEM image)

.py files (python scripts used for processing of the .txt file - both electrical and Raman measurements - and for model calculations)
DOI: 10.15468/dl.9xkt2f
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((38.65359 26.97103,44.41382 26.97103,44.41382 32.63982,38.65359 32.63982,38.65359 26.97103))",
 "Issue is Country coordinate mismatch",
 "PublishingOrg is cb633566-ed21-4684-bcce-df84d0eb4c8a"
 ]
}

 The dataset includes 218 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080229-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxccwf
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Pakistan",
 "TaxonKey is Juglans regia L.",
 "Year 1950-2025"
 ]
}

 The dataset includes 97 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080230-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5zs2ks07
title: MassIVE MSV000098381 - High cell density study in mammalian cells for TGE-based biopharmaceuticals
title: Mammalian cells behave differently when cultured at high cell density, showing changes in morphology, transfection efficiency and productivity. To identify the molecular cause of this phenomenon, the proteome of CHO and HEK293 cells was analyzed at different time points while growing in batch mode from 2 million cells/mL to 10-12 million cells/mL. To uncover the signaling events, spend medium was harvested from high cell density and used to culture cells at 2 million cells/mL after a medium replacement.
DOI: 10.5281/zenodo.15746544
title: UN-RES: A Collection of Resolutions of United Nations for Religion and Spirituality

description: Please visit the dataset documentation on Hugging FaceRedistribution of original UN documents is governed by the United Nations Terms of Use. This dataset is provided for academic research only. No commercial use or redistribution of the original documents is permitted.
DOI: 10.5281/zenodo.15746545
title: UN-RES: A Collection of Resolutions of United Nations for Religion and Spirituality

description: Please visit the dataset documentation on Hugging FaceRedistribution of original UN documents is governed by the United Nations Terms of Use. This dataset is provided for academic research only. No commercial use or redistribution of the original documents is permitted.
DOI: 10.15468/dl.cbrkr5
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia saligna (Labill.) H.L.Wendl.",
 "Country is Ethiopia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 196 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080232-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqwhh8
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia saligna (Labill.) H.L.Wendl.",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 292 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080233-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28899440
title: The core dataset for the study ''<b>Tracing China’s methane emissions: 10,000 coal mines for ten years</b>''

description: Methane is the second most abundant anthropogenic greenhouse gas. China is the largest methane emitting country in the world, greater than the combination of Europe and America. While coal mining represents half of China’s methane emissions, the amount and the trend of emissions remain controversial since 2010. With China stopping updating emission data after 2014, this compromises the accuracy of the trajectory of global methane emissions. Here, we provide a comprehensive inventory of coal mine methane (CMM) emissions from 2011 to 2020, by independently quantifying the weighted emission factors of more than 10000 mines.We would like to clarify that all data sources for this study are publicly available. The core dataset used in this study comes from the <b><i>Compilation of National Coal Mine Gas Level Identification for 2011</i></b>, which is a publicly available book published by the Chinese National Coal Mine Safety Inspection Bureau. This compilation includes detailed data on gas levels in over 10000 coal mines across China, which serves as the basis for our analysis of methane emission factors. Additionally, the provincial coal production data was sourced from the <b><i>China Energy Statistical Yearbook</i></b>, a widely accessible government publication that compiles annual statistics on coal production at the provincial level.We have uploaded the complete dataset to Figshare, which can be accessed via the DOI link. This ensures that all interested researchers can access the full data used in our study for replication and further analysis. We believe that these measures have improved the transparency and repeatability of our work.