cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6819707.v1
title: Ovulatory status and menstrual cycle duration assessed by self-collection of urine on pH strips in a population-based sample of French women not using hormonal contraception

description: <b>Background:</b> Assessing menstrual cycle function in the general population using a non-invasive method is challenging, both in non-industrialized and industrialized countries. <b>Subjects and methods:</b> The Observatory of Fecundity in France (Obseff) recruited on a nationwide basis a random sample of 943 women aged 18–44 years with unprotected intercourse. A sub-study was set up to assess the characteristics of a menstrual cycle by using a non-invasive method adapted to the general population. Voluntary women were sent a collection kit by the post and requested to collect urine samples on pH strips, together with daily recording of reproductive-related information during a full menstrual cycle. A total of 48 women collected urine every day, whereas 160 women collected urine every other day. Immunoassays were used to measure pregnanediol-3–α–glucuronide, estrone-3-glucuronide and creatinine. Ovulation occurrence and follicular phase duration were estimated using ovulation detection algorithms, compared to a gold standard consisting of three external experts in reproductive medicine. <b>Results:</b> Every other day urine collection gave consistent results in terms of ovulation detection with every day collection (intraclass coefficient of correlation, 0.84, 95% confidence interval, 0.76–0.98). The proportion of anovulatory menstrual cycles was 8%. The characteristics of the ovulatory cycles were length 28 (26–34), follicular phase 16 (12–23), luteal phase 13 (10–16) days median (10th–90th percentiles). <b>Discussion-Conclusion:</b> Assessing menstrual cycle characteristics based on urine sample spot only collected every other day in population-based studies through a non-invasive, well accepted and cost-limited procedure not requiring any direct contact with the survey team appears feasible and accurate.
DOI: 10.7284/137387
title: Winch data collected during research cruise TN369 using a Markey DESH-5 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.6819647
title: List of best BLASTP hits (Dataset 9)

description: Annotation of ocellate spot skate transcript contigs with human (GRCh38 RefSeq Protein, 113620 sequences - as of July 12, 2018) and C.milii proteins (NCBI RefSeq, 28600 sequences - as of July 12, 2018) using BLASTP v2.2.30+
DOI: 10.6084/m9.figshare.6819674.v1
title: Li H, Mishra M, Ding S, Miyamoto MM (2018) Diversity and dynamics of “Candidatus Endobugula” and other symbiotic bacteria in Chinese populations of the bryozoan, Bugula neritina. Microb Ecol: in press

description: The metagenomics datasets for the geographic and life cycle samples of Li et al. (2018) are presented here in four separate folders: (OR_GEO) original reads for the geographic samples; (FFS_GEO) final filtered sequences for the geographic samples; (OR_LC) original reads for the life cycle samples; and (FFS_LC) final filtered sequences for the life cycle samples. Each separate dataset is labelled with the abbreviation of its sample (see Table 2 and Figure 1 of Li et al., 2018) followed by either “OR” or “FFS” (for original reads or final filtered sequences, respectively). For example, the “SY3_OR” dataset includes the original reads for the SY<sub>3</sub> geographic sample, whereas the “S6_FFS” dataset contains the final filtered sequences for the S6 life cycle collection.
DOI: 10.6084/m9.figshare.6819629
title: Redundant transcriptome assembly - Head (Dataset 8)

description: Redundant transcriptome assembly based on reads obtained from the library prepared from a head tissue.
DOI: 10.6084/m9.figshare.6819629.v1
title: Redundant transcriptome assembly - Head (Dataset 8)

description: Redundant transcriptome assembly based on reads obtained from the library prepared from a head tissue.
DOI: 10.7284/137388
title: Winch data collected during research cruise TN369 using a Markey DESH-9 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.6819623
title: Redundant transcriptome assembly - Trunk (Dataset 7)

description: Redundant transcriptome assembly based on reads obtained from the library prepared from a trunk tissue.
DOI: 10.6084/m9.figshare.6819617
title: Redundant transcriptome assembly - Cloaca (Dataset 6)

description: Redundant transcriptome assembly based on reads obtained from the library prepared from a cloacal tissue.
DOI: 10.6084/m9.figshare.6819623.v1
title: Redundant transcriptome assembly - Trunk (Dataset 7)

description: Redundant transcriptome assembly based on reads obtained from the library prepared from a trunk tissue.
DOI: 10.6084/m9.figshare.6819602
title: Redundant transcriptome assembly - Caudal (Dataset 5)

description: Redundant transcriptome assembly based on reads obtained from the library prepared from a caudal tissue.
DOI: 10.6084/m9.figshare.6819617.v1
title: Redundant transcriptome assembly - Cloaca (Dataset 6)

description: Redundant transcriptome assembly based on reads obtained from the library prepared from a cloacal tissue.
DOI: 10.7284/137364
title: Winch data collected during research cruise TN371 using a Markey DESH-5 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.6819602.v1
title: Redundant transcriptome assembly - Caudal (Dataset 5)

description: Redundant transcriptome assembly based on reads obtained from the library prepared from a caudal tissue.
DOI: 10.6084/m9.figshare.6819611
title: Collins et al. 2019 - Processed Counts

description: Collins et al. 2019 - Processed count files for mutant lines. <br>These files contain counts for each gene in the Ensembl version 88 annotation for the samples in each mutant line.<br>The README file has more details.
DOI: 10.6084/m9.figshare.6819593
title: Supplementary Information 1 from A method for deducing neck mobility in plesiosaurs, using the exceptionally preserved <i>Nichollssaura borealis</i>

description: This excel spreadsheet contains all the measurements taken across the five trials, three from Nichollssaura borealis, and two from Varanus dumerilii.
DOI: 10.7284/137385
title: Winch data collected during research cruise TN371 using a Markey DESH-5 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.6819593.v1
title: Supplementary Information 1 from A method for deducing neck mobility in plesiosaurs, using the exceptionally preserved <i>Nichollssaura borealis</i>

description: This excel spreadsheet contains all the measurements taken across the five trials, three from Nichollssaura borealis, and two from Varanus dumerilii.
DOI: 10.7284/137386
title: Winch data collected during research cruise TN371 using a Markey DESH-9 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.6819557
title: Time-resolved mapping of genetic interactions to model rewiring of signaling pathways

description: Context-dependent changes in genetic vulnerabilities are important to understand the wiring of cellular pathways and variations in different environmental conditions. However, methodological frameworks to investigate the plasticity of genetic networks over time or in response to external stresses are lacking. To analyze the plasticity of genetic interactions, we performed an arrayed combinatorial RNAi screen in <i>Drosophila</i> cells at multiple time points and after pharmacological inhibition of Ras signaling activity. Using an image-based morphology assay to capture a broad range of phenotypes, we assessed the effect of 12768 pairwise RNAi perturbations in six different conditions. We found that genetic interactions form in different trajectories and developed an algorithm, termed MODIFI, to analyze how genetic interactions rewire over time. Using this framework, we identified more statistically significant interactions compared to end-points assays and further observed several examples of context-dependent crosstalk between signaling pathways such as an interaction between Ras and Rel which is dependent on MEK activity.
DOI: 10.6084/m9.figshare.6819557.v1
title: Time-resolved mapping of genetic interactions to model rewiring of signaling pathways

description: Context-dependent changes in genetic vulnerabilities are important to understand the wiring of cellular pathways and variations in different environmental conditions. However, methodological frameworks to investigate the plasticity of genetic networks over time or in response to external stresses are lacking. To analyze the plasticity of genetic interactions, we performed an arrayed combinatorial RNAi screen in <i>Drosophila</i> cells at multiple time points and after pharmacological inhibition of Ras signaling activity. Using an image-based morphology assay to capture a broad range of phenotypes, we assessed the effect of 12768 pairwise RNAi perturbations in six different conditions. We found that genetic interactions form in different trajectories and developed an algorithm, termed MODIFI, to analyze how genetic interactions rewire over time. Using this framework, we identified more statistically significant interactions compared to end-points assays and further observed several examples of context-dependent crosstalk between signaling pathways such as an interaction between Ras and Rel which is dependent on MEK activity.
DOI: 10.7284/137363
title: Winch data collected during research cruise TN373 using a Markey DESH-5 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137383
title: Winch data collected during research cruise TN373 using a Markey DESH-5 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.6819503
title: help_seeking_for_CMD.sav

description: the data set includes information about help seeking behavior of Jimma univeristy students for common mental disorder (CMD). The study were conducted in Jimma, Ethiopia, from November 08 to 28, 2012. A total of 760 respondents were involved in the study. Help seeking behavior were assessed using the Actual Help Seeking Questionnaire, and mental health status was assessed using the 10-item Kessler psychological distress scale at cut-off limits of 6/7. Instruments were self-administered, monitored by four trained graduate students in mental health in collaboration with class representatives. Ethical approval were obtained from Jimma University ethical review board, and informed written consult were taken from each participant. Data was entered using Epidata version 3.1, and exported to SPSS version 20 for analysis. <br>
DOI: 10.6084/m9.figshare.6819503.v1
title: help_seeking_for_CMD.sav

description: the data set includes information about help seeking behavior of Jimma univeristy students for common mental disorder (CMD). The study were conducted in Jimma, Ethiopia, from November 08 to 28, 2012. A total of 760 respondents were involved in the study. Help seeking behavior were assessed using the Actual Help Seeking Questionnaire, and mental health status was assessed using the 10-item Kessler psychological distress scale at cut-off limits of 6/7. Instruments were self-administered, monitored by four trained graduate students in mental health in collaboration with class representatives. Ethical approval were obtained from Jimma University ethical review board, and informed written consult were taken from each participant. Data was entered using Epidata version 3.1, and exported to SPSS version 20 for analysis. <br>
DOI: 10.6084/m9.figshare.6819500
title: 6K_brown trout_Genotyping_results.txt

description: Analysis performed on 160 sea trout <i>Salmo trutta</i> L., samples orginated from southern Baltic area.
DOI: 10.6084/m9.figshare.6819500.v1
title: 6K_brown trout_Genotyping_results.txt

description: Analysis performed on 160 sea trout <i>Salmo trutta</i> L., samples orginated from southern Baltic area.
DOI: 10.6084/m9.figshare.6819419
title: Fig 1.jpg

description: Feet of a patient suffering from chikungunya fever. Swelling is not present red spots are appearing.
DOI: 10.6084/m9.figshare.6818813
title: NIR individual complete dataset

description: Complete dataset with individuals per row for four different body patches. Information on NIR reflectivity, Visible reflectivity, environmental variables and body size. NOTE: Residuals presented for the relationship between visible and NIR reflectivity at the individual level, however, analyses in paper were done at the species level so that column was recalculated in each analysis using a different tree.
DOI: 10.6084/m9.figshare.6818810
title: Input and Output Files

description: Input and output files can be downloaded from here<br>
DOI: 10.6084/m9.figshare.6818798
title: Experiment CLA-SubjectJ-170508-3St-LRHand-Inter

description: Experiment in which subject performed 3 imageries of left and right hand motion and a passive state, recorded at a lower resolution and dynamic range by custom real-time acquisition software (Inter).
DOI: 10.6084/m9.figshare.6818795
title: Experiment CLA-SubjectJ-170510-3St-LRHand-Inter

description: Experiment in which subject performed 3 imageries of left and right hand motion and a passive state, recorded at a lower resolution and dynamic range by custom real-time acquisition software (Inter).
DOI: 10.6084/m9.figshare.6818792
title: Experiment CLA-SubjectJ-170504-3St-LRHand-Inter

description: Experiment in which subject performed 3 imageries of left and right hand motion and a passive state, recorded at a lower resolution and dynamic range by custom real-time acquisition software (Inter).
DOI: 10.6084/m9.figshare.6818789
title: Experiment 5F-SubjectH-160804-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818786
title: Experiment 5F-SubjectI-160719-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818783
title: Experiment 5F-SubjectG-160413-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818780
title: Experiment 5F-SubjectF-160210-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818777
title: Experiment 5F-SubjectB-160311-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818771
title: Experiment 5F-SubjectB-160309-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818774
title: Experiment 5F-SubjectC-160429-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818765
title: Experiment 5F-SubjectE-160321-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818762
title: Experiment 5F-SubjectI-160723-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818753
title: Experiment 5F-SubjectG-160428-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818744
title: Experiment 5F-SubjectE-160429-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818732
title: Experiment 5F-SubjectA-160408-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818741
title: Experiment 5F-SubjectE-160415-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.6818684
title: Experiment 5F-SubjectC-151204-5St-SGLHand

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using standard sampling rate setting of 200 Hz.
DOI: 10.6084/m9.figshare.6818687
title: Experiment 5F-SubjectB-151110-5St-SGLHand

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using standard sampling rate setting of 200 Hz.
DOI: 10.6084/m9.figshare.6818681
title: Experiment 5F-SubjectB-160316-5St-SGLHand

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using standard sampling rate setting of 200 Hz.
DOI: 10.6084/m9.figshare.6818678
title: Experiment 5F-SubjectF-151027-5St-SGLHand

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using standard sampling rate setting of 200 Hz.
DOI: 10.6084/m9.figshare.6818672
title: Experiment 5F-SubjectA-160405-5St-SGLHand

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using standard sampling rate setting of 200 Hz.
DOI: 10.6084/m9.figshare.6818675
title: Experiment 5F-SubjectF-160209-5St-SGLHand

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using standard sampling rate setting of 200 Hz.
DOI: 10.6084/m9.figshare.6818558
title: mSphere00374-18

description: Supplemental material to mSphere00374-18:<br>Intracellular Staphylococcus aureus modulates host central carbon metabolism to activate autophagy
DOI: 10.6084/m9.figshare.6818564
title: Supporting information for CCSD(F12*) vs. CCSD-F12b vs. CCSD paper

description: Supporting information for manuscript, "Do CCSD and approximate CCSD-F12 variants converge to the same basis set limits? The case of atomization energies" by Manoj K. Kesharwani, Nitai Sylvetsky, Andreas Köhn, David P. Tew, and Jan M.L. Martin, J. Chem. Phys., accepted with revisions
DOI: 10.6084/m9.figshare.6818558.v1
title: mSphere00374-18

description: Supplemental material to mSphere00374-18:<br>Intracellular Staphylococcus aureus modulates host central carbon metabolism to activate autophagy
DOI: 10.6084/m9.figshare.6818564.v2
title: Supporting information for CCSD(F12*) vs. CCSD-F12b vs. CCSD paper

description: Supporting information for manuscript, "Do CCSD and approximate CCSD-F12 variants converge to the same basis set limits? The case of atomization energies" by Manoj K. Kesharwani, Nitai Sylvetsky, Andreas Köhn, David P. Tew, and Jan M.L. Martin, J. Chem. Phys., accepted with revisions
DOI: 10.6084/m9.figshare.6818564.v1
title: Supporting information for CCSD(F12*) vs. CCSD-F12b vs. CCSD paper

description: Supporting information for manuscript, "Do CCSD and approximate CCSD-F12 variants converge to the same basis set limits? The case of atomization energies" by Manoj K. Kesharwani, Nitai Sylvetsky, Andreas Köhn, David P. Tew, and Jan M.L. Martin
DOI: 10.6084/m9.figshare.6818540
title: Triples files

description: .csv & .nt files
DOI: 10.6084/m9.figshare.6818537
title: Statistics GTAA & Wikidata

description: Statistics relating to aligned GTAA Person entities & Wikidata Person entities
DOI: 10.6084/m9.figshare.6818537.v1
title: Statistics GTAA & Wikidata

description: Statistics relating to aligned GTAA Person entities & Wikidata Person entities
DOI: 10.6084/m9.figshare.6818453
title: QoS

description: qos data
DOI: 10.6084/m9.figshare.6818462
title: Mechanisms of seed mass variation along resource gradients

description: All data and analyses of the manuscript are available here.<br>please download all files to the same working directory for running the R script. Below a brief description of each file<br>1. 'seed_mass_experiment_main_script.R' - this R script includes all the analyses presented in the paper. 2. 'slope_abundance.csv' - this dataset describes community abundance in southern slope along soil depth gradient in Beit Guvrin (described in Kadmon & Ron 2018) the data was collected in four soil depth categories 3. 'slope_seed_mass.csv' - this dataset include seed mass data (in mg) for all species in 'slope_abundance.csv'(mass of zero means no available data)4. 'valley_abundance.csv' - this dataset describes community abundance in northern slope and valley in Beit Guvrin (described in DeMalach et al. 2017) the data was collected in two habitats (northern slope and valley) and include also fertilization and removal manipulation (these manipulations were not analyzed in this manuscript)5. 'valley_seed_mass.csv' - this dataset includes seed mass data(in mg) for all species in 'valley_abundance.csv' (mass of zero means no available data)6. 'mesocosm_abundance.csv' - this dataset describes community abundance in mescosom experiment in Jerusalem (described in Kadmon & Ron 2018) the data was collected for four years in four soil depth categories7. 'mesocosm_seed_mass.csv' - this dataset include seed mass data (in mg) for all species in 'mesocosm_abundance.csv' (mass of zero means no available data)8. 'clipping_abundance.csv' - this dataset describes community abundance in clipping experiment in Beit Guvrin (described in Segre et al. 2016) The dataset include only the third year of the experiment9. 'clipping_seed_mass.csv' - this dataset include seed mass data (in mg) for all species in 'clipping_abundance.csv' (mass of zero means no available data)10.'greenhouse.csv' - this dataset include data on biomass (in mg) of the species in the greenhouse experiment. This include seed mass, shoot biomass after45 days and root and shoot biomass at the end of the experiment. <br><br>contact me for any question:<br>nivdemalach@gmail.com