cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5947002
title: Spontaneous motor tempo over the course of a week: The role of the time of the day, chronotype, and arousal

description: The spontaneous motor tempo (SMT) or internal tempo describes the natural pace of predictive and emergent movements such as walking or hand clapping. One of the main research interests in the study of the spontaneous motor tempo relates to factors affecting its pace. Previous studies suggest an influence of the circadian rhythm (i.e., 24-h cycle of the biological clock), physiological arousal changes, and potentially also musical experience. This study aimed at investigating these effects in participants‘ everyday life by measuring their SMT four times a day over seven consecutive days, using an experience sampling method. The pace of the SMT was assessed with a finger-tapping paradigm in a selfdeveloped web application. Measured as the inter-tap interval, the overall mean SMT was 650 ms (SD = 253 ms). Using multi-level modelling (MLM), results show that the pace of the SMT sped up over the course of the day, and that this effect depended on the participants’ chronotype, since participants tending towards morning type were faster in the morning compared to participants tending towards evening type. During the day, the pace of the SMT of morning types stayed relatively constant, whereas it became faster for evening-type participants. Furthermore, higher arousal in participants led to a faster pace of the SMT. Musical sophistication did not influence the SMT. These results indicate that the circadian rhythm influences the internal tempo, since the pace of SMT is not only dependent on the time of the day, but also on the individual entrainment to the 24-h cycle (chronotype).
DOI: 10.5281/zenodo.5947001
title: Spontaneous motor tempo over the course of a week: The role of the time of the day, chronotype, and arousal

description: The spontaneous motor tempo (SMT) or internal tempo describes the natural pace of predictive and emergent movements such as walking or hand clapping. One of the main research interests in the study of the spontaneous motor tempo relates to factors affecting its pace. Previous studies suggest an influence of the circadian rhythm (i.e., 24-h cycle of the biological clock), physiological arousal changes, and potentially also musical experience. This study aimed at investigating these effects in participants‘ everyday life by measuring their SMT four times a day over seven consecutive days, using an experience sampling method. The pace of the SMT was assessed with a finger-tapping paradigm in a selfdeveloped web application. Measured as the inter-tap interval, the overall mean SMT was 650 ms (SD = 253 ms). Using multi-level modelling (MLM), results show that the pace of the SMT sped up over the course of the day, and that this effect depended on the participants’ chronotype, since participants tending towards morning type were faster in the morning compared to participants tending towards evening type. During the day, the pace of the SMT of morning types stayed relatively constant, whereas it became faster for evening-type participants. Furthermore, higher arousal in participants led to a faster pace of the SMT. Musical sophistication did not influence the SMT. These results indicate that the circadian rhythm influences the internal tempo, since the pace of SMT is not only dependent on the time of the day, but also on the individual entrainment to the 24-h cycle (chronotype).
DOI: 10.5284/1034377
title: Council for British Research in the Levant Archaeological Monographs

description: This collection comprised monographs published by the Council for British Research in the Levant. Data in the collection has been removed at the request of the depositor and the monographs are no longer available to download from the ADS. The Council for British Research in the Levant (CBRL) is an independent, not-for-profit organisation that conducts, supports and promotes research in the history, culture, society and archaeology of Jordan, Israel, the Occupied Palestinian Territories, Syria, Lebanon and Cyprus. The Levant Supplementary Series is deigned to present significant new contributions to the study of the humanities and social sciences, as relevant to the countries of the Levant.
DOI: 10.5284/1053684
title: Council for British Research in the Levant Research Reports

description: This collection comprised research reports published by the Council for British Research in the Levant. Data in the collection has been removed at the request of the depositor and the publications are no longer available to download from the ADS. The Council for British Research in the Levant (CBRL) is an independent, not-for-profit organisation that conducts, supports and promotes research in the history, culture, society and archaeology of Jordan, Israel, the Occupied Palestinian Territories, Syria, Lebanon and Cyprus. The Levant Supplementary Series is deigned to present significant new contributions to the study of the humanities and social sciences, as relevant to the countries of the Levant.
DOI: 10.5281/zenodo.6563206
title: Data for "Quantifying Discourse Marker Usage in Oral and Literary Discourse"

description: Anonymized data for the paper "Quantifying Discourse Marker Usage in Oral and Literary Discourse" (currently under blind review)
DOI: 10.5281/zenodo.6563205
title: Data for "Quantifying Discourse Marker Usage in Oral and Literary Discourse"

description: Anonymized data for the paper "Quantifying Discourse Marker Usage in Oral and Literary Discourse" (currently under blind review)
DOI: 10.6084/m9.figshare.19793599
title: config.yml

description: Configuration to run the training.
DOI: 10.6084/m9.figshare.19793770.v2
title: PRISMA_Destriping_Code_MATLAB

description: <br> Spectral-based regression algorithm for destriping PRISMA Hyperspectral Image.
DOI: 10.6084/m9.figshare.19793770
title: PRISMA_Destriping_Code_MATLAB

description: <br> Spectral-based regression algorithm for destriping PRISMA Hyperspectral Image.
DOI: 10.6084/m9.figshare.19793770.v4
title: PRISMA_Destriping_Code_MATLAB

description: <br> Spectral-based regression algorithm for destriping PRISMA Hyperspectral Image.
DOI: 10.6084/m9.figshare.19793770.v3
title: PRISMA_Destriping_Code_MATLAB

description: <br> Spectral-based regression algorithm for destriping PRISMA Hyperspectral Image.
DOI: 10.6084/m9.figshare.19793764.v1
title: CLN_1UAO_GYDPETGTWG_wildtype

description: molecular dynamics simulations of 100 replicas of PDB-ID 1UAO
DOI: 10.6084/m9.figshare.19793764
title: CLN_1UAO_GYDPETGTWG_wildtype

description: molecular dynamics simulations of 100 replicas of PDB-ID 1UAO
DOI: 10.6084/m9.figshare.19793956
title: Supplementary Material for: Prenatal Negative Life Events and Childhood Allergies: The Japan Environment and Children’s Study (JECS)

description: <b><i>Background:</i></b> It is inconclusive whether prenatal negative life events are a risk for the development of allergic diseases in children or whether social capital modifies the association. The objective of this study was to examine whether women’s experiences of such events during pregnancy were associated with the development of allergic diseases in their offspring at 3 years old and whether social capital moderated this association. <b><i>Methods:</i></b> We used data from 81,337 mother-child pairs who participated in the Japan Environment and Children’s Study. This is a prospective birth cohort recruited between January 2011 and March 2014. We examined the associations between prenatal maternal negative life events (e.g., bereavement, financial, and marital problems) during pregnancy and allergic diseases (asthma, eczema, and food allergies) in children after adjustment for covariates using multivariate logistic regression. We also examined interactions between these life events and social capital, measured as two items, social cohesion and social support. <b><i>Results:</i></b> Prenatal negative life events were significantly associated with doctor-diagnosed asthma at 3 years old with a dose-response relationship (one life event vs. none: adjusted odds ratio 1.13, 95% confidence interval [CI]: 1.07–1.20; two life events vs. none: adjusted odds ratio 1.24, 95% CI: 1.13–1.36; three or more life events vs. none: adjusted odds ratio 1.26, 95% CI: 1.10–1.46; <i>p</i> for trend &lt;0.01). Similar results were observed for eczema and food allergies. There were no interactions between life events and social capital. <b><i>Conclusion:</i></b> Prenatal negative life events may be a risk factor for allergies in children. There was no modification of the effect of these events by social capital.
DOI: 10.6084/m9.figshare.19793926
title: Supplementary Material for: A Novel Mutation Eliminates GATA-1 and RUNX1-Mediated Promoter Activity in Galactosyltransferase Gene

description: <b><i>Introduction:</i></b> Mutations in the promoter region and exons of ABO gene may cause changes in the expression of blood group antigens, often showing a weak ABO phenotype. Here, we identified a novel weak ABO subgroup allele that caused B<sub>el</sub> phenotype and explored its mechanisms. <b><i>Methods:</i></b> The ABO phenotype of subjects (Chinese Han nationality) was classified by serological method. The plasma activity of erythrocyte glycosyltransferase was detected by the phosphate coupling method. ABO subtype genotyping was performed by PCR-SSP and exon sequencing. The activity of the promoter was evaluated by a dual-luciferase reporter assay. <b><i>Results:</i></b> We identified a mutation exon 1 c.15_16insTGTTG of the B allele in a B<sub>el</sub> subject. Genealogical investigation showed that the mutation was inherited from her mother. The mutation was located in the promoter region of the ABO gene. The dual-luciferase reporter assay showed that the mutation inactivated GATA-1 and RUNX1-mediated activity of the ABO gene promoter, leading to a decrease in the expression and activity of B glycosyltransferase. <b><i>Conclusion:</i></b> A novel B<sub>var</sub> ABO subgroup allele was identified. The novel mutation can reduce the promoter activity that activated by GATA-1 and RUNX1, subsequently causing the B<sub>el</sub> phenotype.
DOI: 10.6084/m9.figshare.19793926.v1
title: Supplementary Material for: A Novel Mutation Eliminates GATA-1 and RUNX1-Mediated Promoter Activity in Galactosyltransferase Gene

description: <b><i>Introduction:</i></b> Mutations in the promoter region and exons of ABO gene may cause changes in the expression of blood group antigens, often showing a weak ABO phenotype. Here, we identified a novel weak ABO subgroup allele that caused B<sub>el</sub> phenotype and explored its mechanisms. <b><i>Methods:</i></b> The ABO phenotype of subjects (Chinese Han nationality) was classified by serological method. The plasma activity of erythrocyte glycosyltransferase was detected by the phosphate coupling method. ABO subtype genotyping was performed by PCR-SSP and exon sequencing. The activity of the promoter was evaluated by a dual-luciferase reporter assay. <b><i>Results:</i></b> We identified a mutation exon 1 c.15_16insTGTTG of the B allele in a B<sub>el</sub> subject. Genealogical investigation showed that the mutation was inherited from her mother. The mutation was located in the promoter region of the ABO gene. The dual-luciferase reporter assay showed that the mutation inactivated GATA-1 and RUNX1-mediated activity of the ABO gene promoter, leading to a decrease in the expression and activity of B glycosyltransferase. <b><i>Conclusion:</i></b> A novel B<sub>var</sub> ABO subgroup allele was identified. The novel mutation can reduce the promoter activity that activated by GATA-1 and RUNX1, subsequently causing the B<sub>el</sub> phenotype.
DOI: 10.6084/m9.figshare.19697860
title: Supplementary Material for: Clinical accuracy of two different criteria for the detection of caries lesions around restorations in primary teeth

description: This is a delayed-type cross-sectional prospective accuracy study nested in a randomized clinical trial. The aim was to investigate the diagnostic accuracy of two visual criteria for caries lesions detection around restorations in primary teeth: the International Dental Federation (FDI) criteria, considering adaptation, staining and presence of caries, and the Caries Associated with Restorations and Sealants (CARS) system. For this, one examiner made the diagnosis and subsequent treatment decision using visual assessment in 163 children (3 to 10 years old) with both FDI and CARS criteria. The order of criteria used was defined by randomization. The reference standard was composed of two approaches: (i) presence of carious tissue after restoration removal or (ii) presence of caries lesions after six and 12 months of follow-up. Sensitivity, specificity, and accuracy parameters were calculated at the dentin threshold. Poisson multilevel regression analyses were performed to evaluate the association of the diagnostic methods and other explanatory variables with the outcomes. Of the 651 restorations included, 480 were evaluated by the reference standard methods and were analyzed. The CARS system presented higher accuracy (0.721) than those obtained with FDI recurrence of caries (0.702), FDI marginal adaptation (0.700) and FDI marginal staining criteria (0.681). The FDI marginal staining showed the study’s lowest sensitivity (0.280) and accuracy (0.681) values. The specificity values of FDI recurrence of caries and FDI marginal adaptation were lower than the CARS system. Restorations assessed after the follow-up period resulted in lower sensitivity but higher specificity than those replaced after initial evaluation. In conclusion, the CARS system is more accurate in detecting caries around restorations in primary teeth than the FDI system, in general. However, the FDI recurrence of caries and FDI marginal adaptation present similar performance to the CARS system when the dentin threshold is considered. On the other hand, marginal staining is not an accurate parameter to evaluate caries around restorations.
DOI: 10.6084/m9.figshare.19697860.v1
title: Supplementary Material for: Clinical accuracy of two different criteria for the detection of caries lesions around restorations in primary teeth

description: This is a delayed-type cross-sectional prospective accuracy study nested in a randomized clinical trial. The aim was to investigate the diagnostic accuracy of two visual criteria for caries lesions detection around restorations in primary teeth: the International Dental Federation (FDI) criteria, considering adaptation, staining and presence of caries, and the Caries Associated with Restorations and Sealants (CARS) system. For this, one examiner made the diagnosis and subsequent treatment decision using visual assessment in 163 children (3 to 10 years old) with both FDI and CARS criteria. The order of criteria used was defined by randomization. The reference standard was composed of two approaches: (i) presence of carious tissue after restoration removal or (ii) presence of caries lesions after six and 12 months of follow-up. Sensitivity, specificity, and accuracy parameters were calculated at the dentin threshold. Poisson multilevel regression analyses were performed to evaluate the association of the diagnostic methods and other explanatory variables with the outcomes. Of the 651 restorations included, 480 were evaluated by the reference standard methods and were analyzed. The CARS system presented higher accuracy (0.721) than those obtained with FDI recurrence of caries (0.702), FDI marginal adaptation (0.700) and FDI marginal staining criteria (0.681). The FDI marginal staining showed the study’s lowest sensitivity (0.280) and accuracy (0.681) values. The specificity values of FDI recurrence of caries and FDI marginal adaptation were lower than the CARS system. Restorations assessed after the follow-up period resulted in lower sensitivity but higher specificity than those replaced after initial evaluation. In conclusion, the CARS system is more accurate in detecting caries around restorations in primary teeth than the FDI system, in general. However, the FDI recurrence of caries and FDI marginal adaptation present similar performance to the CARS system when the dentin threshold is considered. On the other hand, marginal staining is not an accurate parameter to evaluate caries around restorations.
DOI: 10.6084/m9.figshare.19793905
title: Supplementary Material for: EBUS-TBNA: A 2-Year Experience from a Tertiary Pathology Centre with Cyto-Histological Correlation

description: <b><i>Introduction:</i></b> Endoscopic ultrasound-guided fine-needle aspiration and endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) methods are expanding due to their minimally invasive nature using real-time image guidance, a low incidence of complications, and a diagnostic rate ranging from 89% to 93.6%. The application of EBUS-TBNA was able to downgrade 40% of patients with suspicion of stage III lung cancer on PET scan. <b><i>Methods:</i></b> In the present study, we analysed the diagnostic outcomes of EBUS cytology at the Laboratory of Pathology, Fimlab Laboratories, Tampere, Finland, during a 2-year period. In our analysis, 1176 EBUS samples from 486 patients that underwent EBUS-TBNA in Tampere University Hospital (TAYS) from January 2017 to December 2018 were reviewed. The mean age of the patients was 64 ± 14 (SD) years with the age range from 19 to 90 years. Cytospin cytology slides stained by Papanicolaou stain and cell blocks were performed in each sample. Further immunohistochemical stains were ordered by the pathologist on demand. <b><i>Results:</i></b> The diagnostic yield was 89.5% and the diagnostic accuracy was 77.9% in the present study. The sensitivity for malignancy in EBUS-TBNA diagnosis was 95.69% and the negative predictive value 96.75%. Cyto-histopathological diagnosis correlation was 54.7% (95% confidence interval [CI]: 40.6%–66.4%, <i>p</i> &lt; 0.001), and the histological accuracy compared to the exact original diagnosis was 43.5%. When considering the histological diagnoses that support the original diagnosis, the correlation was 61.3% (95% CI: 48.4%–71.5%, <i>p</i> &lt; 0.001) and the accuracy was 72.2%. The overall inadequate rate of EBUS-TBNA samples in this study was 10.5%. <b><i>Conclusions:</i></b> The EBUS-TBNA diagnostic yield, diagnostic accuracy, and inadequate rate in the present study are in line with previously published studies.
DOI: 10.6084/m9.figshare.19793905.v1
title: Supplementary Material for: EBUS-TBNA: A 2-Year Experience from a Tertiary Pathology Centre with Cyto-Histological Correlation

description: <b><i>Introduction:</i></b> Endoscopic ultrasound-guided fine-needle aspiration and endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) methods are expanding due to their minimally invasive nature using real-time image guidance, a low incidence of complications, and a diagnostic rate ranging from 89% to 93.6%. The application of EBUS-TBNA was able to downgrade 40% of patients with suspicion of stage III lung cancer on PET scan. <b><i>Methods:</i></b> In the present study, we analysed the diagnostic outcomes of EBUS cytology at the Laboratory of Pathology, Fimlab Laboratories, Tampere, Finland, during a 2-year period. In our analysis, 1176 EBUS samples from 486 patients that underwent EBUS-TBNA in Tampere University Hospital (TAYS) from January 2017 to December 2018 were reviewed. The mean age of the patients was 64 ± 14 (SD) years with the age range from 19 to 90 years. Cytospin cytology slides stained by Papanicolaou stain and cell blocks were performed in each sample. Further immunohistochemical stains were ordered by the pathologist on demand. <b><i>Results:</i></b> The diagnostic yield was 89.5% and the diagnostic accuracy was 77.9% in the present study. The sensitivity for malignancy in EBUS-TBNA diagnosis was 95.69% and the negative predictive value 96.75%. Cyto-histopathological diagnosis correlation was 54.7% (95% confidence interval [CI]: 40.6%–66.4%, <i>p</i> &lt; 0.001), and the histological accuracy compared to the exact original diagnosis was 43.5%. When considering the histological diagnoses that support the original diagnosis, the correlation was 61.3% (95% CI: 48.4%–71.5%, <i>p</i> &lt; 0.001) and the accuracy was 72.2%. The overall inadequate rate of EBUS-TBNA samples in this study was 10.5%. <b><i>Conclusions:</i></b> The EBUS-TBNA diagnostic yield, diagnostic accuracy, and inadequate rate in the present study are in line with previously published studies.
DOI: 10.21335/nmdc-675177809
title: CTD data from Nansen Legacy Cruise - JC3 Winter gaps cruise

description: The Nansen Legacy JC3 cruise (19.02.-11.03.2022) aimed to fill gaps after the earlier NL cruises, in particular during the winter-to-spring transition and in the northern part of the NL transect to the Nansen Basin. Joint physical, chemical, and biological sampling and experiments for new technology addressed aims of RF1, RF2, RF3 and RA-C. Sampling started in the Atlantic domain with a process station at P1. Afterwards, the cruise focused on the northern Barents Sea around and north of Kvitøya covering process stations at P5, P7 and between Nord Austlandet and Kvitøya. They lasted from 29 to 68 hours to enable observation of at least one daily cycle in the under-ice water layer. Ice conditions varied but consisted mostly of extensive but thin first-year ice, often as small floes that were frozen together. In the northernmost region, the floes were larger, but the ice remained thin. Despite a fair amount of daylight available, the biological sampling seemed to indicate that the ecosystem was still in winter mode. In addition to the process stations, the northern part of the NL transect was covered from the shelf north of Kvitøya into the deeper Nansen Basin. This included mainly hydrographic measurements and chemical sampling along the entire transect, biological sampling at P6, and benthic sampling at selected depths from shelf over slope to deep. In the entire region, warm Atlantic water was prominent and close to the surface, potentially explaining the lack of thick sea ice and late ice formation. Before and after the main cruise program, several gliders were recovered. One mooring was pinged but could not be located.
DOI: 10.5281/zenodo.6563270
title: Distributive constructions with interrogative pronouns (Russian)

description: The RuTenTen-based dataset is supplementary to the article "Autonomous distributive constructions with interrogative pronouns in Russian." The article is devoted to one type of Russian distributive constructions with two interrogative pronouns <em>кто куда, кто о чем, когда как</em>, which possess the meaning ‘different Xs are featured with different Ys’. We discovered that the constructions without a predicate in the right context form a special type, which differs from indirect distributive questions and quasi-relatives in their semantic, pragmatic, syntactic, and communicative properties. Based on corpus data, we show their historical development and modern usage and describe the most frequent lexical variables, which fill the construction. The conclusion is that the frequency, syntactic features, and degree of idiomatization have their own semantic, communicative, and pragmatic grounds.