cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7634029
title: Trichoderma-Arabidopsis interaction by Ambient Ionization Mass Spectrometry

description: Interaction between the plant <em>Arabidopsis thaliana</em> and the fungus <em>Trichoderma atroviride</em>. Three sample groups (<em>Arabidopsis thaliana</em>, <em>Trichoderma atroviride</em> and <em>Trichoderma-Arabidopsis</em> interaction) with 3 biological replicates were monitored for 10 days, resulting in 40 points. This experiment was focused on monitoring the kinetics of the volatile organic compound (VOC) 6-Pentyl-2H-Pyran-2-One (6-PP), a molecule produced by <em>Trichoderma</em> that helps to establish interaction with plants. More details and results are available in the publication written by Torres-Ortega et al. (DOI: 10.3390/metabo12121231). Data were collected with custom 3D-printed Low-Temperature Plasma (DOI: 10.1021/acs.analchem.6b01019) ambient ionization source, coupled to an LCQ-fleet ion trap (Thermo Scientific, USA). Mass spectra were taken in full spectra at 50-500 <em>m/z</em> range, on profile mode. Each MS scan consists of 10 micros cans. Data was saved under the RAW property format of Thermo. To convert to mzML open format, Proteowizard was used.
DOI: 10.5281/zenodo.7644717
title: Trichoderma-Arabidopsis interaction by Ambient Ionization Mass Spectrometry

description: Interaction between the plant <em>Arabidopsis thaliana</em> and the fungus <em>Trichoderma atroviride</em>. Three sample groups (<em>Arabidopsis thaliana</em>, <em>Trichoderma atroviride</em> and <em>Trichoderma-Arabidopsis</em> interaction) with 3 biological replicates were monitored for 10 days, resulting in 40 points. This experiment was focused on monitoring the kinetics of the volatile organic compound (VOC) 6-Pentyl-2H-Pyran-2-One (6-PP), a molecule produced by <em>Trichoderma</em> that helps to establish interaction with plants. More details and results are available in the publication written by Torres-Ortega et al. (DOI: 10.3390/metabo12121231). Data were collected with custom 3D-printed Low-Temperature Plasma (DOI: 10.1021/acs.analchem.6b01019) ambient ionization source, coupled to an LCQ-fleet ion trap (Thermo Scientific, USA). Mass spectra were taken in full spectra at 50-500 <em>m/z</em> range, on profile mode. Each MS scan consists of 10 micros cans. Data was saved under the RAW property format of Thermo. To convert to mzML open format, Proteowizard was used.
DOI: 10.5281/zenodo.7703262
title: Trichoderma-Arabidopsis interaction by Ambient Ionization Mass Spectrometry

description: Interaction between the plant <em>Arabidopsis thaliana</em> and the fungus <em>Trichoderma atroviride</em>. Three sample groups (<em>Arabidopsis thaliana</em>, <em>Trichoderma atroviride</em> and <em>Trichoderma-Arabidopsis</em> interaction) with 3 biological replicates were monitored for 10 days, resulting in 40 points. This experiment was focused on monitoring the kinetics of the volatile organic compound (VOC) 6-Pentyl-2H-Pyran-2-One (6-PP), a molecule produced by <em>Trichoderma</em> that helps to establish interaction with plants. More details and results are available in the publication written by Torres-Ortega et al. (DOI: 10.3390/metabo12121231). Data were collected with custom 3D-printed Low-Temperature Plasma (DOI: 10.1021/acs.analchem.6b01019) ambient ionization source, coupled to an LCQ-fleet ion trap (Thermo Scientific, USA). Mass spectra were taken in full spectra at 50-500 <em>m/z</em> range, on profile mode. Each MS scan consists of 10 micros cans. Data was saved under the RAW property format of Thermo. To convert to mzML open format, Proteowizard was used.
DOI: 10.6084/m9.figshare.22223854
title: New Forest Map 2020 in China

description: The present study produced a new reference forest map for China from three land cover products for 2020. These datasets included the World Cover 2020 (ESA-2020), ESRI 2020 Land Cover (ESRI-2020), and the GlobeLand30 version of V2020 (GLC-2020). Within the production of the reference forest map for China, a pixel was assumed to represent forest when the same pixel among multiple land cover products showed forest properties, thereby decreasing the uncertainties of classification of forests at a large scale.
DOI: 10.6084/m9.figshare.22223893
title: Landscape drivers and spatial scale predict epiphyte biodiversity across human-modified landscapes.

description: The study was located in the departments of Cundinamarca, Boyacá, Meta, and Santander, in the Colombian eastern cordillera (Fig. 1 and Fig. S1). We sampled 23 landscapes of Andean forests across a wide elevational range (1163-3415 m) with mean cloud cover of 82% (25-90%; Wilson & Jetz 2016), temperature ranging 7-28 ℃ and annual precipitation of 891-3711 mm per year. Landscapes were composed of Andean forests (Andino and Altoandino; Etter et al. 2021) with discrete boundaries surrounded by a predominantly pastureland matrix. Forests were selected to ensure that we sampled the full range of the elevational gradient in the study region. <br> Surveys were conducted from January to November 2019. Within each local landscape, we sampled between two and 18 sampling plots of 10 X 30 m (n= 167 plots in total). Sampling plots were located between 150 and 600 m apart. We recorded all individuals on standing tree trunks, fallen tree trunks and branches, vines, lianas, leaves on standing trees or herbaceous plants, palm trees, tree ferns, and cycads in the understory (50-200 cm above-ground without soil contact). Forest structure was highly variable with average tree density of 38.8 trees per plot (8-100 trees per plot) and basal area of average 14.1 cm2 (5 - 52 cm2), and we also detected recent events of selective logging. The number of species and adult individuals (i.e., ramets) were recorded, whilst younger stages were not included due to a large uncertainty in species identification. Ramets usually comprised various individual stems, but for our purpose, a ramet only counts as one single individual spatially separated from another set of stems of the same or another species or an empty space (Sanford, 1968). Adult plants were defined as all large individuals (within the observed variation in the local population) with evidence of developed floral or reproductive structure, large ramets, many stems per stand, and a prominent root system. Identification to species or morphospecies was conducted following specialized literature and consultancy with local experts at the Herbarium VALLE!. Orchid species with no flowers were taken to nurseries in the vicinity of the sampled plots, and later visited for identification. All dubious individuals and juveniles were ignored due to uncertainty in their taxonomical rank.
DOI: 10.6084/m9.figshare.22223893.v1
title: Landscape drivers and spatial scale predict epiphyte biodiversity across human-modified landscapes.

description: The study was located in the departments of Cundinamarca, Boyacá, Meta, and Santander, in the Colombian eastern cordillera (Fig. 1 and Fig. S1). We sampled 23 landscapes of Andean forests across a wide elevational range (1163-3415 m) with mean cloud cover of 82% (25-90%; Wilson & Jetz 2016), temperature ranging 7-28 ℃ and annual precipitation of 891-3711 mm per year. Landscapes were composed of Andean forests (Andino and Altoandino; Etter et al. 2021) with discrete boundaries surrounded by a predominantly pastureland matrix. Forests were selected to ensure that we sampled the full range of the elevational gradient in the study region. <br> Surveys were conducted from January to November 2019. Within each local landscape, we sampled between two and 18 sampling plots of 10 X 30 m (n= 167 plots in total). Sampling plots were located between 150 and 600 m apart. We recorded all individuals on standing tree trunks, fallen tree trunks and branches, vines, lianas, leaves on standing trees or herbaceous plants, palm trees, tree ferns, and cycads in the understory (50-200 cm above-ground without soil contact). Forest structure was highly variable with average tree density of 38.8 trees per plot (8-100 trees per plot) and basal area of average 14.1 cm2 (5 - 52 cm2), and we also detected recent events of selective logging. The number of species and adult individuals (i.e., ramets) were recorded, whilst younger stages were not included due to a large uncertainty in species identification. Ramets usually comprised various individual stems, but for our purpose, a ramet only counts as one single individual spatially separated from another set of stems of the same or another species or an empty space (Sanford, 1968). Adult plants were defined as all large individuals (within the observed variation in the local population) with evidence of developed floral or reproductive structure, large ramets, many stems per stand, and a prominent root system. Identification to species or morphospecies was conducted following specialized literature and consultancy with local experts at the Herbarium VALLE!. Orchid species with no flowers were taken to nurseries in the vicinity of the sampled plots, and later visited for identification. All dubious individuals and juveniles were ignored due to uncertainty in their taxonomical rank.
DOI: 10.5281/zenodo.7703256
title: Nonlinear Development of Chlorophyll a Suppressed by Seasonal Synchronization in the North Pacific

description: The data used to produce the main figures and tables in this work
DOI: 10.5281/zenodo.7703255
title: Nonlinear Development of Chlorophyll a Suppressed by Seasonal Synchronization in the North Pacific

description: The data used to produce the main figures and tables in this work
DOI: 10.6084/m9.figshare.22223866
title: Assessing the suitability and dynamics of three medicinal Sambucus species in China under current and future climate scenarios

description: <strong>Abstract</strong> <strong>Aim:</strong> Climate change is rapidly altering the global ecological environment, causing habitat degradation and altering the distribution patterns of numerous plant species. <em>Sambucus </em>species have been wildly recognized for their pharmacological value, but their distribution patterns in China remain poorly understood. We studied the potential suitability and dynamics of three <em>Sambucus</em> species (<em>Sambucus adnata</em>, <em>Sambucus javanica</em>, and <em>Sambucus williamsii</em>) in China under climate change. <strong>Location:</strong> China. <strong>Methods:</strong> We used the random forest model to predict the potential suitable distributions of three <em>Sambucus</em> species in China under current and future climate scenarios (including SSP245-2050, SSP585-2050, SSP245-2090 and SSP585-2090 scenarios). Moreover, we identified key factors affecting their potential distributions. <strong>Results:</strong> Our results showed that <em>S. adnata</em> and <em>S. javanica</em> were primarily influenced by temperature seasonality and mean diurnal range, respectively, while <em>S. williamsii</em> was mainly affected by precipitation of the wettest month. Currently, <em>S. williamsii</em> was primarily distributed in north and central south China (9.57 × 105 km2), <em>S. javanica</em> was found in the south and east regions (6.41×105 km2), and <em>S. adnata</em> was mainly distributed in the southwest (1.99×105 km2). Under future climate change scenarios, <em>S. adnata</em> may shift to higher latitudes, while <em>S. javanica</em> may shift to lower latitudes. However, potential suitable areas for <em>S. williamsii</em> may contract under certain scenarios in 2050 and 2090, with an expansion under SSP585 in 2090. <strong>Main conclusions:</strong> Our study highlights the influence of climatic factors on the potential distribution of <em>Sambucus</em> species and provides theoretical guidance for the conservation, cultivation, and utilization of <em>Sambucus</em> medicinal plant resources under climate change.
DOI: 10.6084/m9.figshare.22223866.v1
title: Assessing the suitability and dynamics of three medicinal Sambucus species in China under current and future climate scenarios

description: <strong>Abstract</strong> <strong>Aim:</strong> Climate change is rapidly altering the global ecological environment, causing habitat degradation and altering the distribution patterns of numerous plant species. <em>Sambucus </em>species have been wildly recognized for their pharmacological value, but their distribution patterns in China remain poorly understood. We studied the potential suitability and dynamics of three <em>Sambucus</em> species (<em>Sambucus adnata</em>, <em>Sambucus javanica</em>, and <em>Sambucus williamsii</em>) in China under climate change. <strong>Location:</strong> China. <strong>Methods:</strong> We used the random forest model to predict the potential suitable distributions of three <em>Sambucus</em> species in China under current and future climate scenarios (including SSP245-2050, SSP585-2050, SSP245-2090 and SSP585-2090 scenarios). Moreover, we identified key factors affecting their potential distributions. <strong>Results:</strong> Our results showed that <em>S. adnata</em> and <em>S. javanica</em> were primarily influenced by temperature seasonality and mean diurnal range, respectively, while <em>S. williamsii</em> was mainly affected by precipitation of the wettest month. Currently, <em>S. williamsii</em> was primarily distributed in north and central south China (9.57 × 105 km2), <em>S. javanica</em> was found in the south and east regions (6.41×105 km2), and <em>S. adnata</em> was mainly distributed in the southwest (1.99×105 km2). Under future climate change scenarios, <em>S. adnata</em> may shift to higher latitudes, while <em>S. javanica</em> may shift to lower latitudes. However, potential suitable areas for <em>S. williamsii</em> may contract under certain scenarios in 2050 and 2090, with an expansion under SSP585 in 2090. <strong>Main conclusions:</strong> Our study highlights the influence of climatic factors on the potential distribution of <em>Sambucus</em> species and provides theoretical guidance for the conservation, cultivation, and utilization of <em>Sambucus</em> medicinal plant resources under climate change.
DOI: 10.6084/m9.figshare.22223911
title: Validation Samples for SFAC

description: The 2,072 samples of secondary and 3000 samples of stable forest, respectively were used to assess the accuracy of the results produced by each algorithm and ensemble. Samples for validation were selected randomly from the 7th National Forest Resources Inventory (NFRI) and were compared to the secondary forest maps produced above. The candidate points were visually examined using “Landsat Time Series Explorer”, a shared Application on GEE (https://jstnbraaten.users.earthengine.app/view/landsat-timeseries-explorer). In addition, historical imagery from Google Earth (https://earth.google.com/), GF-6 panchromatic/multispectral (PMS) images (a high-resolution Chinese satellite) (https://data.cresda.cn/#/2dMap) helped to distinguish stable and secondary forest samples. A total of 2,072 validation samples of secondary forest age ranging from 0 to 34 were defined by the re-interpreted approach mentioned above. Over 3,000 candidates of stable forests were systematically sampled from stable forest maps for validation. The classification of these samples of stable forest was ensured by filtering through many public land cover products. As shown in Table 1, these datasets included AGLC-2000-2015, GLC_FCS, FNF, GLC, CLUD, and GFCC. The categorization of the samples as stable forest was ensured by processing using Python, ArcGIS 10.6, and GEE. The 3,000 samples of the stable forest were then completed after manually removing pixels at imperfect sites. The value 1 of class in the data presents the secondary forest, value 0 of class presents the stable forest samples.
DOI: 10.34740/kaggle/dsv/5118633
title: OntoUML/UFO Catalog
DOI: 10.6084/m9.figshare.19786348
title: Data used in Grid generation for hexagonal DGGS

description: Here are the experiemnt data used in the manuscript "A fast grid generation algorithm for local irregular parts of hexagonal discrete global grid systems" from <em>Cartography and Geographic Information Science</em>
DOI: 10.6084/m9.figshare.19786348.v1
title: Data used in Grid generation for hexagonal DGGS

description: Here are the experiemnt data used in the manuscript "A fast grid generation algorithm for local irregular parts of hexagonal discrete global grid systems" from <em>Cartography and Geographic Information Science</em>
DOI: 10.6084/m9.figshare.22223956
title: Secondary forest samples for VCT

description: The European Space Agency Climate Change Initiative-Land Cover (ESA_CCI-LC) project provides a consistent annual global land cover map with a 300-m spatial resolution for 1992 to 2020. The stable and secondary forest maps were individually derived based on ESA_CCI-LC by yearly overlaying. Pixels of secondary forest were identified as transitions in land cover to forest over the study period. The samples of stable and secondary forests were filtered based on various conditions, including an area &gt; 4,500 m2, random selection, and data conversion. In the dataset, the code of age_cci presents the age of secondary forest calculated from ESA_CCI-LC in 2020, the code of year presents the year of establishment of secondary forest stand.
DOI: 10.6084/m9.figshare.22223956.v1
title: Secondary forest samples for VCT

description: The European Space Agency Climate Change Initiative-Land Cover (ESA_CCI-LC) project provides a consistent annual global land cover map with a 300-m spatial resolution for 1992 to 2020. The stable and secondary forest maps were individually derived based on ESA_CCI-LC by yearly overlaying. Pixels of secondary forest were identified as transitions in land cover to forest over the study period. The samples of stable and secondary forests were filtered based on various conditions, including an area &gt; 4,500 m2, random selection, and data conversion. In the dataset, the code of age_cci presents the age of secondary forest calculated from ESA_CCI-LC in 2020, the code of year presents the year of establishment of secondary forest stand.
DOI: 10.5281/zenodo.7703332
title: The Mediating Effect of Psychological Well-Being on the Relationship between Psychosocial Working Conditions and Work Engagement

description: Raw data for article titled: The Mediating Effect of Psychological Well-Being on the Relationship between Psychosocial Working Conditions and Work EngagementThe Mediating Effect of Psychological Well-Being on the Relationship between Psychosocial Working Conditions and Work Engagement
DOI: 10.5281/zenodo.7703331
title: The Mediating Effect of Psychological Well-Being on the Relationship between Psychosocial Working Conditions and Work Engagement

description: Raw data for article titled: The Mediating Effect of Psychological Well-Being on the Relationship between Psychosocial Working Conditions and Work EngagementThe Mediating Effect of Psychological Well-Being on the Relationship between Psychosocial Working Conditions and Work Engagement
DOI: 10.6084/m9.figshare.22224004
title: articles

description: we developed a novel approach for designing and fabricating depth-varied reservoir-on-a-chip micromodels using the silicon-based multi-depth fabrication strategy and on-chip random generation algorithm. Depth-varied reservoir-on-a-chip micromodels can mitigate confinement of uniform depth and maintain the wide range of pore size distribution similar to natural-occurring 3D porous media. The imbibition experiments performed in the single-depth and multi-depth reservoir-on-a-chip micromodels show the complex interaction between depth variation, capillary number Ca, and wettability (contact angle) θ on multiphase flow dynamics. The combination of micromodel experiments and direct numerical simulations enabled us to purify the complex capillarity as snap-off and by-pass phenomena. A theoretical model was proposed for suppressing or triggering these unstable imbibition phenomena. Phase diagrams predicted by the models were theoretically analyzed and numerically verified, they show that for θ≤45°, increasing Ca stabilizes the imbibition front by suppressing the snap-off mode; for contact angle θ&lt;90°, increasing θ stabilizes the imbibition front by inhibiting the by-pass mode, but increasing depth variation destabilizes the imbibition front as snap-off or by-pass or their combined effect. Our findings extend the classical understanding of forced imbibition in 2D micromodels. The results have potential applications in predicting or manipulating CO2 capillary trapping and enhanced gas/oil displacement efficiency.
DOI: 10.6084/m9.figshare.22224004.v1
title: articles

description: we developed a novel approach for designing and fabricating depth-varied reservoir-on-a-chip micromodels using the silicon-based multi-depth fabrication strategy and on-chip random generation algorithm. Depth-varied reservoir-on-a-chip micromodels can mitigate confinement of uniform depth and maintain the wide range of pore size distribution similar to natural-occurring 3D porous media. The imbibition experiments performed in the single-depth and multi-depth reservoir-on-a-chip micromodels show the complex interaction between depth variation, capillary number Ca, and wettability (contact angle) θ on multiphase flow dynamics. The combination of micromodel experiments and direct numerical simulations enabled us to purify the complex capillarity as snap-off and by-pass phenomena. A theoretical model was proposed for suppressing or triggering these unstable imbibition phenomena. Phase diagrams predicted by the models were theoretically analyzed and numerically verified, they show that for θ≤45°, increasing Ca stabilizes the imbibition front by suppressing the snap-off mode; for contact angle θ&lt;90°, increasing θ stabilizes the imbibition front by inhibiting the by-pass mode, but increasing depth variation destabilizes the imbibition front as snap-off or by-pass or their combined effect. Our findings extend the classical understanding of forced imbibition in 2D micromodels. The results have potential applications in predicting or manipulating CO2 capillary trapping and enhanced gas/oil displacement efficiency.
DOI: 10.6084/m9.figshare.22224013
title: Data

description: we developed a novel approach for designing and fabricating depth-varied reservoir-on-a-chip micromodels using the silicon-based multi-depth fabrication strategy and on-chip random generation algorithm. Depth-varied reservoir-on-a-chip micromodels can mitigate confinement of uniform depth and maintain the wide range of pore size distribution similar to natural-occurring 3D porous media. The imbibition experiments performed in the single-depth and multi-depth reservoir-on-a-chip micromodels show the complex interaction between depth variation, capillary number Ca, and wettability (contact angle) θ on multiphase flow dynamics. The combination of micromodel experiments and direct numerical simulations enabled us to purify the complex capillarity as snap-off and by-pass phenomena. A theoretical model was proposed for suppressing or triggering these unstable imbibition phenomena. Phase diagrams predicted by the models were theoretically analyzed and numerically verified, they show that for θ≤45°, increasing Ca stabilizes the imbibition front by suppressing the snap-off mode; for contact angle θ&lt;90°, increasing θ stabilizes the imbibition front by inhibiting the by-pass mode, but increasing depth variation destabilizes the imbibition front as snap-off or by-pass or their combined effect. Our findings extend the classical understanding of forced imbibition in 2D micromodels. The results have potential applications in predicting or manipulating CO2 capillary trapping and enhanced gas/oil displacement efficiency.