cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/26uwj5
title: Describing ten new species of Eutyphoeus (Clitellata: Acanthodrilidae) from Manipur, North-East India, together with one new record

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tiwari, Nalini, Tiwari, Pooja, Shilpi, Kaushik, James, Samuel W., Gupta, Neelima, Yadav, Shweta (2025): Describing ten new species of Eutyphoeus (Clitellata: Acanthodrilidae) from Manipur, North-East India, together with one new record. European Journal of Taxonomy 1012: 128-171, DOI: 10.5852/ejt.2025.1012.3035, URL: https://europeanjournaloftaxonomy.eu/index.php/ejt/article/download/3035/13617Abstract. A comprehensive investigation into the genus Eutyphoeus (Clitellata: Acanthodrilidae) in Manipur, North-East India, has led to the discovery of ten novel species and the identification of one previously unrecorded species in the region. The study utilized an integrative taxonomic approach, combining both morphological and genetic analyses. Nine of the newly described species – Eutyphoeus morehensis Tiwari & Yadav sp. nov., E. lamdengensis Tiwari & Yadav sp. nov., E. shiroensis Tiwari & Yadav sp. nov., E. kashongensis Tiwari & Yadav sp. nov., E. ukhrulensis Tiwari & Yadav sp. nov., E. lokchaensis Tiwari & Yadav sp. nov., E. baronongini Tiwari & Yadav sp. nov., E. yangoupokpensis Tiwari & Yadav sp. nov. and E. tengnoupalensis Tiwari & Yadav sp. nov. – belong to the E. hastatus group, characterized by holandric male organs, bidiverticulate spermathecae, and annular tumescence around the male porophore. However, E. kwathensis Tiwari & Yadav sp. nov. was found to diverge from E. turaensis, and is diagnosed by metandric male organs, avestibulate and apenile male genital orifices. The study is based on extensive field surveys and the use of DNA barcoding. Each species is accompanied with morphological descriptions that emphasize distinctive features and geographical distribution. In addition, DNA barcodes were analyzed to confirm species identities and determination of genetic distinctiveness. The provided microphotographs of important morphological features complement the taxonomic descriptions. The study significantly enriches the understanding of the diversity of species of Eutyphoeus in Manipur, northeastern region of India, and underscores the importance of integrating molecular techniques in the taxonomy of earthworms and surveys on biodiversity.
DOI: 10.15468/dl.brkya9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Polyommatus thersites",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066489-251120083545085/datasets/export for details.
DOI: 10.15468/dl.d723dd
title: Occurrence Download

description: A dataset containing 3174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lasthenia gracilis)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is United States of America",
 "StateProvince is California"
 ]
}

 The dataset includes 3174 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066487-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/v8arag
title: The genus Batophila Foudras, 1860 (Coleoptera, Chrysomeliae, Galerucinae, Alticitae) in Taiwan, with descriptions of 11 new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lee, Chi-Feng (2025): The genus Batophila Foudras, 1860 (Coleoptera, Chrysomeliae, Galerucinae, Alticitae) in Taiwan, with descriptions of 11 new species. ZooKeys 1258: 73-118, DOI: 10.3897/zookeys.1258.163900AbstractThe Taiwanese species of the genus Batophila Foudras, 1860 are revised. Batophila acutangula Heikertinger, 1921 is removed from the list of Taiwanese fauna. Batophila taiwanica Döberl, 2010 is recognized and redescribed. Additionally, eleven new species from Taiwan are described: B. alishanensis sp. nov., B. choui sp. nov., B. chungi sp. nov., B. houjayi sp. nov., B. huangi sp. nov., B. jungchani sp. nov., B. meihuai sp. nov., B. tsoui sp. nov., B. wusheensis sp. nov., B. yehi sp. nov., and B. yuae sp. nov. The species descriptions include illustrations of aedeagi, antennae, gonocoxae, abdominal ventrite VIII, and spermathecae.
DOI: 10.15468/dl.rbhd3q
title: Occurrence Download

description: A dataset containing 329994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bryophyta, Marchantiophyta, Anthocerotophyta)",
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-81.32674 -22.04283, -34.98326 -22.04283, -34.98326 11.53396, -81.32674 11.53396, -81.32674 -22.04283))"
 ]
}

 The dataset includes 329994 records from 223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066475-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18064127
title: kaiju_mycobacterium_pre-compiled

description: Kaiju database – Mycobacterium pre-compiled subset (2024 release)

This dataset provides a pre-compiled Kaiju database containing protein sequences exclusively from the genus Mycobacterium, extracted from the NCBI NR/RefSeq repositories (August 2024).

The database was built to optimize the taxonomic classification of sequencing reads from Mycobacterium tuberculosis and related species, significantly reducing computational requirements compared to the full Kaiju NR database (~100 GB).Unlike the standard Kaiju NR database or raw FASTA-based subsets, this release distributes the final Kaiju index files already built, allowing immediate use in analysis pipelines without requiring database construction.

This subset includes representative genomes from Mycobacterium tuberculosis, M. bovis, M. africanum, M. smegmatis, and other clinically or environmentally relevant species within the genus.

Contents:





kaiju_db_mycobacterium_2024.fmi — Kaiju formatted database index




nodes.dmp, names.dmp — NCBI taxonomy mapping files



Total size: ~1 GBKaiju version: compatible with ≥ 1.9.0Reference source: NCBI NR/RefSeq (retrieved August 2024)

Use case:Designed for pipelines performing taxonomic classification and contamination screening of Mycobacterium sequencing data, enabling faster execution while maintaining taxonomic resolution at the species level.

Recommended citation:

Kaiju database – Mycobacterium subset (2024 release). Zenodo. https://10.5281/zenodo.17554952

Menzel, P., Ng, K. L., & Krogh, A. (2016). Fast and sensitive taxonomic classification for metagenomics with Kaiju. Nature Communications, 7, 11257. https://doi.org/10.1038/ncomms11257
DOI: 10.5281/zenodo.18064126
title: kaiju_mycobacterium_pre-compiled

description: Kaiju database – Mycobacterium pre-compiled subset (2024 release)

This dataset provides a pre-compiled Kaiju database containing protein sequences exclusively from the genus Mycobacterium, extracted from the NCBI NR/RefSeq repositories (August 2024).

The database was built to optimize the taxonomic classification of sequencing reads from Mycobacterium tuberculosis and related species, significantly reducing computational requirements compared to the full Kaiju NR database (~100 GB).Unlike the standard Kaiju NR database or raw FASTA-based subsets, this release distributes the final Kaiju index files already built, allowing immediate use in analysis pipelines without requiring database construction.

This subset includes representative genomes from Mycobacterium tuberculosis, M. bovis, M. africanum, M. smegmatis, and other clinically or environmentally relevant species within the genus.

Contents:





kaiju_db_mycobacterium_2024.fmi — Kaiju formatted database index




nodes.dmp, names.dmp — NCBI taxonomy mapping files



Total size: ~1 GBKaiju version: compatible with ≥ 1.9.0Reference source: NCBI NR/RefSeq (retrieved August 2024)

Use case:Designed for pipelines performing taxonomic classification and contamination screening of Mycobacterium sequencing data, enabling faster execution while maintaining taxonomic resolution at the species level.

Recommended citation:

Kaiju database – Mycobacterium subset (2024 release). Zenodo. https://10.5281/zenodo.17554952

Menzel, P., Ng, K. L., & Krogh, A. (2016). Fast and sensitive taxonomic classification for metagenomics with Kaiju. Nature Communications, 7, 11257. https://doi.org/10.1038/ncomms11257
DOI: 10.15468/nvz51u
title: Review of the perciform fish genus Symphysanodon Bleeker (Symphysanodontidae), with descriptions of three new species, S. mona, S. parini, and S. rhax.

description: This dataset contains the digitized treatments in Plazi based on the original journal article William D. Anderson, Jr., Victor G. Springer (2005): Review of the perciform fish genus Symphysanodon Bleeker (Symphysanodontidae), with descriptions of three new species, S. mona, S. parini, and S. rhax. Zootaxa 996: 1-44, URL: http://www.zoobank.org/urn:lsid:zoobank.org:pub:70666DA6-E23A-4347-BE4B-B66ED78FBA99
DOI: 10.15468/chrfgg
title: Secondo contributo alla flora vascolare dell’Umbria (Italia centrale)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Falcinelli, Francesco, Conti, Fabio, Donnini, Domizia (2016): Secondo contributo alla flora vascolare dell’Umbria (Italia centrale). Natural History Sciences 3 (1): 21-26, DOI: 10.4081/nhs.2016.273, URL: http://dx.doi.org/10.4081/nhs.2016.273Abstract - Second additions to the vascular flora of the Umbria region (central Italy).In this work 13 new floristic records for Umbria region (central Italy) are reported. The survey was carried out from 2009 to 2015. Some species are of particular interest from a phytogeographical or conservational point of view.
DOI: 10.15468/cwgrxq
title: The Trichoptera of Panama XXVIII. Nine new species of microcaddisflies (Trichoptera, Hydroptilidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Armitage, Brian J., Harris, Steven C., Rodriguez, Viterbo (2025): The Trichoptera of Panama XXVIII. Nine new species of microcaddisflies (Trichoptera, Hydroptilidae). Neotropical Biology and Conservation 20 (2): 125-147, DOI: 10.3897/neotropical.20.e148738AbstractIn this study, we describe and illustrate nine new species of microcaddisflies: Oxyethira jaramillo sp. nov., Neotrichia afuera sp. nov., Neotrichia aguirrei sp. nov., Neotrichia betegui sp. nov., Neotrichia rancheria sp. nov., Neotrichia sona sp. nov., Metrichia riosi sp. nov., Ochrotrichia mariettae sp. nov. and Ochrotrichia martinez sp. nov. The majority of these new species were collected on the Soná Peninsula or offshore on the Coiba National Park islands. With these additions, there are now 544 species of caddisflies known from Panama, distributed amongst 15 families and 56 genera.
DOI: 10.15468/ged44q
title: Revision of the Oriental and Australasian diving beetle genus Sandracottus Sharp, 1882 (Coleoptera, Dytiscidae, Dytiscinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hendrich, Lars, Brancucci, Michel (2025): Revision of the Oriental and Australasian diving beetle genus Sandracottus Sharp, 1882 (Coleoptera, Dytiscidae, Dytiscinae). ZooKeys 1223: 87-147, DOI: 10.3897/zookeys.1223.138220AbstractA comprehensive revision is presented of the Oriental and Australasian diving beetle genus Sandracottus Sharp, 1882 (Coleoptera: Dytiscidae: Dytiscinae: Aciliini) and seven junior subjective synonyms are proposed. Sandracottus guerini Balfour-Browne, 1939, syn. nov. is a junior subjective synonym of S. femoralis Heller, 1934; S. manipurensis Vazirani, 1969, syn. nov. of S. hunteri (Crotch, 1872); S. mixtus Blanchard, 1843, syn. nov. of S. chevrolati (Aubé, 1838); and S. angulifer Heller, 1934, syn. nov., S. nauticus Sharp, 1882, syn. nov., and S. palawanensis Satô, 1978, syn. nov. of S. maculatus (Wehncke, 1876). Finally, S. vijayakumari Anand et al., 2021, syn. nov. is a new synonym of S. dejeanii (Aubé, 1838). New status is assigned to S. bakewellii guttatus (Sharp, 1882), stat. nov. as well as S. hunteri (Crotch, 1872), stat. rev. Lectotypes are designated for the following taxa: Dytiscus flavocinctus Guérin-Méneville, 1830, Hydaticus chevrolati Aubé, 1838, Hydaticus insignis Wehncke, 1876, Sandracottus baeri Régimbart, 1899, Sandracottus bizonatus Régimbart, 1899, and Sandracottus ornatus Sharp, 1882. A neotype is designated for Hydaticus maculatus Wehncke, 1876. In total, three Oriental species, two of which also occur in the East Palaearctic, six Southeast Asian species, one species from New Guinea and the Moluccas, and one from Australia with an endemic subspecies in Central Australia (S. bakewellii guttatus) are recognised. Each taxon is presented with a diagnosis, habitat preferences, conservation assessments, distribution data, and a comprehensive bibliography. Important characters (habitus, dorsal colouration, median lobes and parameres) are illustrated. All currently valid taxa are redescribed. Sandracottus jaechi Wewalka & Vazirani, 1975 from Sri Lanka, S. bizonatus from Borneo, S. insignis from the Philippines and S. rotundus Sharp, 1882 from Sulawesi are recommended to be listed in the next IUCN red data book. A key to all species is provided.
DOI: 10.15468/a8fkd7
title: Revision of the genus Sinopoda Jäger, 1999 in Laos with discovery of the first eyeless huntsman spider species (Sparassidae: Heteropodinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jäger, Peter (2012): Revision of the genus Sinopoda Jäger, 1999 in Laos with discovery of the first eyeless huntsman spider species (Sparassidae: Heteropodinae). Zootaxa 3415: 37-57, URL: http://www.mapress.com/zootaxa/2012/f/zt03415p057.pdfAbstractThe genus Sinopoda Jager, 1999 is recorded for the first time in Laos. Nine new species are described: Sinopoda steineri spec. nov. (female; Luang Nam Tha), S. tham spec. nov. (male, female; Oudomxai), S. sitkao spec. nov. (female; Luang Prabang), S. taa spec. nov. (female; Luang Prabang), S. suang spec. nov. (female; Huaphan), S. peet spec. nov. (female; Huaphan), S. guap spec. nov. (female; Khammuan), S. soong spec. nov. (female; Khammuan), S. scurion spec. nov. (female; Khammuan). All species have been collected from caves. Sinopoda scurion spec. nov. represents the first record of an eyeless huntsman spider, S. guap spec. nov. exhibits only small lenses of six eyes (AME lacking), S. soong spec. nov. has only two small eye lenses. Four immature individuals (Sinopoda sp. indet. A-D) exhibited a reduced size or number of eyes, they are listed including their localities although they could not be identified to species level.Key words: taxonomy, systematics, new species, troglomorphy
DOI: 10.15468/fsmpg3
title: Diversity of cave-dwelling pseudoscorpions from eastern Yunnan in China, with the description of eleven new species of the genus Lagynochthonius (Pseudoscorpiones, Chthoniidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hou, Yanmeng, Gao, Zhizhong, Zhang, Feng (2022): Diversity of cave-dwelling pseudoscorpions from eastern Yunnan in China, with the description of eleven new species of the genus Lagynochthonius (Pseudoscorpiones, Chthoniidae). Zootaxa 5198 (1): 1-65, DOI: 10.11646/zootaxa.5198.1.1, URL: http://dx.doi.org/10.11646/zootaxa.5198.1.1AbstractEleven new Lagynochthonius species from twelve karst caves of eastern Yunnan are described, including detailed diagnosis and illustrations: L. crassus sp. nov. from Unnamed Cave 1 (Maguan County), L. fengi sp. nov. from Unnamed Cave 2 (Yanjin County), L. magnidentatus sp. nov. from Xiao Cave (Fuyuan County), L. minimus sp. nov. from Yanfen Cave and Cizhu Cave (Xichou County), L. retrorsus sp. nov. from Qinglong Cave (Daguan County), L. serratus sp. nov. from Unnamed Cave 3 (Malipo County), L. spinulentus sp. nov. from Yingshan Cave (Zhenxiong County), L. xiaolinensis sp. nov. from Dayan Cave (Zhenxiong County), L. xibaiensis sp. nov. from Hama Cave (Zhenxiong County), L. xinjiaoensis sp. nov. from Yueliang Cave (Fuyuan County), L. yaowangguensis sp. nov. from Unnamed Cave 4 (Malipo County). An identification key to all known Lagynochthonius species from China is also provided.
DOI: 10.34740/kaggle/dsv/14304321
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/2ert22
title: Two new species of the genus Cryptopimpla Taschenberg (Hymenoptera, Ichneumonidae, Banchinae) with an updated key to African species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Reynolds, Terry, van Noort, Simon (2023): Two new species of the genus Cryptopimpla Taschenberg (Hymenoptera, Ichneumonidae, Banchinae) with an updated key to African species. Journal of Hymenoptera Research 96: 667-696, DOI: http://dx.doi.org/10.3897/jhr.96.104038, URL: http://dx.doi.org/10.3897/jhr.96.104038
DOI: 10.5281/zenodo.18064444
title: The Impact of Semantic Annotations on Joinable Columns Detection in Data Lakes - Datasets (ECB, Webtables, Wikitables)

description:  Datasets and semantic annotations for reproducing experiments for "The Impact of Semantic Annotations on JoinableColumns Detection in Data Lakes"
DOI: 10.5281/zenodo.18064445
title: The Impact of Semantic Annotations on Joinable Columns Detection in Data Lakes - Datasets (ECB, Webtables, Wikitables)

description:  Datasets and semantic annotations for reproducing experiments for "The Impact of Semantic Annotations on JoinableColumns Detection in Data Lakes"
DOI: 10.15468/rp6hs8
title: Towards a revision of the bamboo corals (Octocorallia): Part 5, new genera and species of Keratoisididae from the Tasmanian deep sea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lapointe, Abby, Watling, Les (2022): Towards a revision of the bamboo corals (Octocorallia): Part 5, new genera and species of Keratoisididae from the Tasmanian deep sea. Zootaxa 5168 (2): 137-157, DOI: 10.11646/zootaxa.5168.2.3AbstractFour new genera and six new species of deep-sea bamboo corals (Family: Keratoisididae) from the seamounts off the eastern and southern coast of Tasmania are described and illustrated. In situ high-definition images from remotely operated vehicles, compound microscopy, and Scanning Electron Microscopy (SEM) of 29 specimens collected at depths of 729 to 3950 m were used to provide data on distinguishing morphological characters. The species described include two new species in the genus Keratoisis, two species in the newly described genus Adinisis, and one species each in the new genera Tanyostea and Dokidisis. The species Keratoisis magnifica and Lepidisis solitaria are re-assigned to the newly described genus Onkoisis due to the shape and design of the polyp arrangement and sclerites, which differ considerably from that of the type species of Keratoisis.
DOI: 10.15468/dl.kpfjbb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Polyommatus icarus",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066491-251120083545085/datasets/export for details.
DOI: 10.15468/m4xeys
title: Taxonomic study of the genus Campylomyza Meigen (Diptera, Cecidomyiidae) in Korea with descriptions of seven new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ham, Daseul, Bae, Yeon Jae (2025): Taxonomic study of the genus Campylomyza Meigen (Diptera, Cecidomyiidae) in Korea with descriptions of seven new species. ZooKeys 1223: 221-245, DOI: 10.3897/zookeys.1223.128062AbstractThe genus Campylomyza Meigen, 1818, belongs to the subfamily Micromyinae (Diptera, Cecidomyiidae). The genus, comprising 40 species, is best known in the Palearctic Region. To date, four species are recorded in Korea: Campylomyza appendiculata, C. flavipes, C. furva, and C. spinata. Based on our field investigations from 2017 to 2020, five species are newly recorded from Korea (C. abjecta, C. aborigena, C. cornuta, C. cavitata, and C. cingulata) and seven new species are described (C. ambulata sp. nov., C. angusta sp. nov., C. convexa sp. nov., C. cornigera sp. nov., C. hori sp. nov., C. odae sp. nov., and C. salicia sp. nov.), based on morphological identification and molecular analyses. Detailed morphological and molecular data, including mitochondrial COI sequences are provided, with species diagnosis, descriptions, and keys for identification of those species.
DOI: 10.15468/8mtjus
title: New species and records of ascomycetes on cypress in Beijing, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bi, Zixian, Wu, Yingying, Li, Shuji, Tian, Chengming (2025): New species and records of ascomycetes on cypress in Beijing, China. MycoKeys 123: 271-317, DOI: 10.3897/mycokeys.123.165848AbstractCypress, a collective term for plants belonging to the Cupressaceae family, is widely utilized in Chinese landscaping and holds considerable economic and medicinal importance. In recent years, dieback of branches and foliage in cypress has been widespread in the Ming Tombs area of Beijing, yet the associated ascomycetous fungi remain unidentified. During an investigation of the species of ascomycetes associated with three cypress species (Juniperus chinensis, J. procumbens, and Platycladus orientalis) in the Ming Tombs area of Beijing, 22 fungal strains were isolated from withered branches and diseased leaves to healthy strobili and mature cones. Based on integrated morphological and multi-gene phylogenetic analyses, these strains were identified as 13 fungal species belonging to 8 genera. Among these, two novel species — Nigrospora platycladiensis sp. nov. and Spegazzinia juniperi sp. nov. — and two new host records, Aplosporella hesperidica and Nigrospora philosophiae-doctoris, are reported herein. This study contributes to our understanding of the richness of ascomycetes on cypress.
DOI: 10.5281/zenodo.17820084
title: HPC at German Universities - Data analysis references
DOI: 10.15468/767qfe
title: First records of two genera and thirteen species of Tabanidae (Diptera) from Honduras

description: This dataset contains the digitized treatments in Plazi based on the original journal article Veroy, Katerin, Orozco, Jesus, Henriques, Augusto L. (2022): First records of two genera and thirteen species of Tabanidae (Diptera) from Honduras. ZooKeys 1084: 27-42, DOI: http://dx.doi.org/10.3897/zookeys.1084.77038, URL: http://dx.doi.org/10.3897/zookeys.1084.77038