cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5123737.v1
title: Supplementary Material for: Questionnaire-Based Survey Conducted in 2011 concerning Endoscopic Management of Barrett’s Esophagus in East Asian Countries

description: <b><i>Background/Aims:</i></b> Endoscopic definitions and management of Barrett’s esophagus vary widely among countries. To examine the current situation regarding diagnosis, epidemiology, management and treatment of Barrett’s esophagus in East Asian countries using a questionnaire-based survey. <b><i>Methods:</i></b> Representative members of the Committee of the International Gastrointestinal Consensus Symposium developed and sent a questionnaire to major institutions in China, South Korea, Japan, Thailand, Indonesia, and the Philippines. <b><i>Results:</i></b> A total of 56 institutions in the 6 countries participated in the survey. We found that the presence of specialized columnar metaplasia is considered to be important for diagnosing Barrett’s esophagus in East Asian countries except for Japan. C&M criteria have not been well accepted in East Asia. The palisade vessels are mainly used as a landmark for the esophagogastric junction in Japan. The prevalence of long segment Barrett’s esophagus is extremely low in East Asia, while the prevalence of short segment Barrett’s esophagus is very high only in Japan, likely due to different diagnostic criteria. <b><i>Conclusion:</i></b> Among East Asian countries, we found both similarities and differences regarding diagnosis and management of Barrett’s esophagus. The findings in the present survey are helpful to understand the current situation of Barrett’s esophagus in East Asian countries.
DOI: 10.6084/m9.figshare.5129260.v1
title: Supplementary Material for: Is Myomectomy Prior to Assisted Reproductive Technology Cost Effective in Women with Intramural Fibroids?

description: <b><i>Aim:</i></b> To evaluate the cost effectiveness of surgery to remove intramural (IM) fibroids prior to assisted reproductive technology (ART). <b><i>Methods:</i></b> The decision tree mathematical model along with sensitivity analysis was performed to analyze cost effectiveness of: (1) myomectomy followed by ART or (2) ART with IM myoma(s) in situ. <b><i>Results:</i></b> At the median ongoing pregnancy (OP) rate (OPR) reported in the literature for a fresh, autologous ART cycle with IM fibroids in situ vs. post-IM myomectomy, average cost per OP was $72,355 vs. 66,075, indicating a cost savings with myomectomy. Sensitivity analysis over the range of reported OPRs demonstrated that pre-ART IM myomectomy was always cost effective when OPR among women with in situ myomas was &lt;15.4%. However, for OPRs ≥15.4%, pre-ART IM myomectomy was only cost effective if it increased OPR by at least 9.6%. At the high end of OPRs reported for patients with IM myomas in situ (31.4%), a 19.5% improvement in OPR was needed to justify IM myomectomy from a cost perspective. <b><i>Conclusion:</i></b> Myomectomy should be used sparingly in cases where the goal of surgery is to achieve improvement in the outcomes of ART.
DOI: 10.6084/m9.figshare.7752320.v1
title: Calibration of HiLoad 16/60 Superdex gel-filtration column

description: HiLoad 16/60 Superdex gel-filtration column was calibrated by using the two gel Filtration Calibration kits from GE Healthcare, one containing proteins with molecular weigh in the range of 44,000 - 669,000 Da and the other with proteins between 6,500 and 75,000 Da plus Blue Dextran (MW = 2,000 Da) in both kits.The calculation of Kav (elution volume parameter) for each of the calibration standards allow the determination of the molecular weight of an unknown protein by taking in account its elution volume.<br>
DOI: 10.17632/rb24h9g6m4
title: Supplementary material - A risk analysis model for biosecurity in Brazil using the Analytical Hierarchy Process (AHP)

description: Data and information for the supplementary material of the article submitted to Microbial Risk Analysis.
DOI: 10.6084/m9.figshare.15029247.v1
title: Pulsed resources and the resource-prediction strategy: a field-test using a 36-year study of small mammals

description: The dataset contains necessary files to replicate the analyses in the article: Dri, G. F., Hunter Jr, M. L., Witham, J., & Mortelliti, A. (2022). Pulsed resources and the resource‐prediction strategy: a field‐test using a 36‐year study of small mammals. <em>Oikos</em>, e09551. https://doi.org/10.1111/oik.09551 Please contact the authors if you would like to collaborate on a project using these data. If additional comments or questions arise, please contact Gabriela Franzoi Dri (gabriela.franzoi@maine.edu) or Alessio Mortelliti (alessio.mortelliti@maine.edu).
DOI: 10.6084/m9.figshare.28533617.v1
title: Simulation data for Lammer, H., Scherf, M., et al. Earth-mass planets with He atmospheres in the habitable zone of Sun-like stars, Nature Astronomy, accepted, 2025.

description: Simulation data produced for the Nature Astronomy article "Earth-mass planets with He atmospheres in the habitable zone of Sun-like stars" by Lammer, Scherf et al. Data is provided for planets with 0.7-3.0 M_Earth in the HZ of solar-like stars that follow XUV flux evolutionary paths of so-called slow, moderate, and fast rotators.The main data contains (as a function of age, planetary mass, and stellar XUV flux):the primordial atmosphere mass fraction;the He fraction in the atmospheres;the total mass loss rates.In addition, it also provides:The final optical planet radii at the end of the simulations for different planetary masses and slow, moderate, and fast rotators.Atmospheric profiles for two specific cases, i.e., for 0.97 M<sub>Earth</sub> and 1.00 M<sub>Earth</sub>, both for the slow rotator case. The profiles are for the last time step of the simulations. For 0.97 M<sub>Earth</sub>, hydrogen is completely lost afterward.The transit depth in the HeI triplet for 1.00 M<sub>Earth</sub> for tmospheric He fractions of 30%, 50%, and 70%.The final author edited pre-publication figures of the article as pdf and their source data (one xlsx-file for each figure).Further information on the 1D hydrodynamic upper atmosphere model and the parameter range of the simulations can be found in the article.
DOI: 10.6084/m9.figshare.28613945.v2
title: Naija and Igbo Parallel Dataset.xlsx

description: This is a parallel dataset of Naija(Nigerian pidgin) and Igbo languages
DOI: 10.17632/5dg5yfpx25
title: Dermatologic Needs and Access to Dermatology Care in an Uninsured Population: Investigating the Impact of a University-Affiliated Free Clinic

description: Supplemental material for our study "Dermatologic Needs and Access to Dermatology Care in an Uninsured Population: Investigating the Impact of a University-Affiliated Free Clinic"
DOI: 10.6084/m9.figshare.10060235.v1
title: Appendix 1_PONE-D-19-19688.xls

description: Original population of uncomplicated monochorionic twins that was used for constructing MC twins specific longitudinal references for the following Doppler parameters: umbilical artery pulsatility index (UA-PI), middle cerebral artery (MCA) PI and peak systolic velocity (PSV) and ductus venosus (DV) PI.<br>
DOI: 10.6084/m9.figshare.17031821.v1
title: Supplementary Material for: Trimethylamine-N-Oxide Aggravates Kidney Injury via Activation of p38/MAPK Signaling and Upregulation of HuR

description: <b><i>Background:</i></b> Trimethylamine-N-oxide (TMAO) is an intestinal metabolic toxin, which is produced by gut flora via metabolizing high-choline foods. TMAO is known to increase the risk of atherosclerosis and cardiovascular events in chronic kidney disease (CKD) patients. <b><i>Objectives:</i></b> The objective of this study was to explore the role and mechanism of TMAO aggravating kidney injury. <b><i>Method:</i></b> We used the five-sixths nephrectomy (5/6 Nx)-induced CKD rats to investigate whether TMAO could aggravate kidney damage and its possible mechanisms. Six weeks after the operation, the two groups of 5/6 Nx rats were subjected to intraperitoneal injection with 2.5% glucose peritoneal dialysis fluid (2.5% PDF) and 2.5% PDF plus TMAO 20 mg/kg/day. <b><i>Results:</i></b> In this study, we provided evidence showing TMAO significantly aggravated renal failure as well as inflammatory cell infiltration and in five-sixths nephrectomy-induced CKD rats. We found that TMAO could upregulate inflammatory factors including MCP-1, TNF-α, IL-6, IL-1β, and IL-18 by activating p38 phosphorylation and upregulation of human antigen R. TMAO could aggravate oxidative stress by upregulating NOX4 and downregulating SOD. The result also confirmed that TMAO promoted NLRP3 inflammasome formation as well as cleaved caspase-1 and IL-1β activation in the kidney tissue. <b><i>Conclusions:</i></b> Taken together, the present study validates TMAO as a pro-inflammatory factor that causes renal inflammatory injury and renal function impairment. Inhibition of TMAO synthesis or promoting its clearance may be a potential therapeutic approach of CKD in the future.
DOI: 10.6084/m9.figshare.19499942.v2
title: patches and local annotations, slide 074, zoom 124x124 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.22233298.v1
title: Supplementary Table 9.xlsx

description: Metabolomics data derived from livers of PBS- and K7M2-TE-EVP-educated mice.
DOI: 10.6084/m9.figshare.9692744.v3
title: Data package for SCB cohort and other

description: Data package with genome-wide expression data from SCB cohort, and other data sets from NCBI GEO.
DOI: 10.6084/m9.figshare.13109495.v1
title: Raw data of enzyme activity

description: enzyme activity<br>
DOI: 10.6084/m9.figshare.7392677.v2
title: A bioprinted human-glioblastoma-on-a-chip reproduces patient-specific responses to chemoradiotherapy

description: The dataset is for the figures in the study published in Nature Biomedical Engineering.
DOI: 10.17632/37syp7hj8n
title: Dataset of Human Immunodeficiency Virus (HIV) Infection Rate Based on Some Endogenous Variables

description: Human Immunodeficiency Virus (HIV) remains a significant public health concern, with adults being at greater risk. Thus, understanding the dynamics of HIV transmission is crucial for effective prevention and control strategies, hence the need for a continuous clinical survey of the patients’ records of diagnosis and treatment for HIV. 
The data include the quarterly records of 138 adults diagnosed with HIV at Osun State University Teaching Hospital, Nigeria which involves the number of adults tested positive and negative for each of the endogenous variables discussed below. Information was sought using a convenient sampling method, which entails careful selection of individual records based on availability. The data was grouped into quarterly records of the diagnosed adults, with an average age ranging between 26 years and 52 years, and spread between the years 2008 and 2021. The records comprise 72 Females and 66 Males while the presence of each symptom is coded as 1 and the absence coded as 0. 
The endogenous variables observed in the clinical records of the surveyed patients are Fever (F), Diarrhea (D), Abdominal pain (AP), Skin rash (SR), Mouth sour (MS), Cellulitis (C), Coughing with sputum (CS), Loss of appetite (LA), Genital infections (GI), Medical fitness (MF), Headache (H), Catarrh (CA), Weight Loss (WL), Excessive Sweat (ES), Mouth Sour (MS), and Body weakness (BW). The impacts of these aforementioned factors would be examined on the spread of HIV.
The clinical survey revealed that 77 individuals (55.80%) did not experience fever, while 61 (44.20%) did. Diarrhea was reported by 39 participants (28.26%), leaving 99 (71.74%) without this symptom. Abdominal pain and cellulitis were both reported by only 4 individuals (2.90%), with 134 participants (97.10%) indicating no occurrences of these symptoms. In terms of medical fitness, 110 individuals (79.71%) reported no fitness issues, whereas 28 (20.29%) reported having some. Cough with sputum affected 50 participants (36.23%), while 88 (63.77%) did not report this symptom. Headaches were almost universally absent, with 137 individuals (99.28%) not experiencing any. Catarrh was present in 14 participants (10.14%), with 124 (89.86%) reporting no instances. Loss of appetite was reported by 5 individuals (3.62%), and skin rashes were observed in 28 participants (20.29%). Weight loss affected 49 individuals (35.51%), and excessive sweating was reported by 137 participants (99.28%). Mouth soreness was noted in 27 participants (19.57%), while genital infections were reported by 6 individuals (4.35%). Body weakness was reported by 49 participants (35.51%). In the age distribution, 56 individuals (40.58%) fall into the young adult’s category while 82 individuals (59.42%) are categorized as older adults. Notably, all participants in the study were confirmed to be HIV positive, emphasizing a focused analysis of this group’s health characteristics.
DOI: 10.17632/8sfj59fmyb
title: Data for: In situ characterization of foam morphology during melting of simulated waste glass using x-ray computed tomography

description: Excel calculations, raw data, and ImageJ macro from in situ X-ray CT analysis of glass melt.
DOI: 10.17632/g9wyfrpy68
title: ewN2HDECAY—A program for the calculation of Electroweak one-loop corrections to Higgs decays in the Next-to-Minimal Two-Higgs-Doublet Model including state-of-the-art QCD corrections

description: We present in this paper our new program package ewN2HDECAY for the calculation of the partial decay widths and branching ratios of the Higgs bosons of the Next-to-Minimal 2-Higgs Doublet Model (N2HDM). The N2HDM is based on a general CP-conserving 2HDM which is extended by a real scalar singlet field. The program computes the complete electroweak one-loop corrections to all non-loop-induced two-body on-shell Higgs boson decays in the N2HDM and combines them with the state-of-the-art QCD corrections that are already implemented in the existing program N2HDECAY. Most of the independent input parameters of the electroweak sector of the N2HDM are renormalized in an on-shell scheme. The soft-Z_2-breaking squared mass scale m^2_{12} and the vacuum expectation value v_S of the SU(2)_L singlet field, however, are renormalized with MS conditions, while for the four scalar mixing angles α_i (i=1, 2, 3) and β of the N2HDM, several different renormalization schemes are applied. By giving out the leading-order and the loop-corrected partial decay widths separately from the branching ratios, the program ewN2HDECAY not only allows for phenomenological analyses of the N2HDM at highest precision, it can also be used for a study of the impact of the electroweak corrections and the remaining theoretical uncertainty due to missing higher-order corrections based on a change of the renormalization scheme. The input parameters are then consistently calculated with a parameter conversion routine when switching from one renormalization scheme to the other. The latest version of the program ewN2HDECAY can be downloaded from the URL https://github.com/marcel-krause/ewN2HDECAY.
DOI: 10.17632/p3gmf5cspr
title: Cobalt in feed - Research data

description: 110 samples of complementary feed were collected in different Italian regions and analysed between 2018 and 2022. Samples were n = 37 complementary feeds for dairy cows, n = 27 complementary feed for bulls/steers, n = 26 complementary feed for calves and n = 20 complementary feed for which no specific category of cattle for which they are intended is indicated (hereinafter referred to as “cattle”).
The mean values for the different feed types were cattle – 0.26 mg kg-1, bulls/steers – 0.40 mg kg-1, dairy cows – 0.27 mg kg-1 and calves – 0.25 mg kg-1.
The analysis of cobalt levels in ruminant feed revealed significant differences in supplementation in the examined animal categories. Bulls and steers feed exhibited the highest cobalt levels, with some samples elevated concentrations (up to 1.7 mg kg-1) compared to other categories (for which the highest concentration was 0.9 mg kg-1). Conversely, dairy cows displayed more homogeneous and generally lower cobalt levels, suggesting greater uniformity in the feed intended for this category. 
The feed intended for bulls may contain higher levels of cobalt, compared to other feeds, to ensure adequate amounts of cobalt to prevent consequences associated with cobalt or vitamin B12 deficiency.
DOI: 10.6084/m9.figshare.28433162.v1
title: Supplementary Materials for Manuscript

description: Numerous cancer treatments have been studied, however the concern of chemoresistance is still prevalent in the field, and one of the proteins responsible is clusterin. In this study, potential inhibitors of clusterin were designed through fragment-based drug discovery. Commercially available fragment libraries were screened for anti-cancer activity and the rule of three and then docked. The highest affinity fragment underwent fragment growing. Resulting candidate drugs were docked and screened for toxicity. Qualitative structure-activity relationship analysis was conducted to determine the properties relevant to the affinities, identifying 4 distinct chemical domains. Candidates retaining the base structure provided both anticancer potential and additional interactions with residues due to the increase in size and complexity, qualities found to contribute most to activity. 194 candidate drugs showed great potential for clusterin inhibition which could serve as inhibitors or as probes. ADMET filtering was conducted to filter out for general cancer cell application, the most favourable resulting in a top 1 final candidate drug that underwent molecular dynamics. Simulations revealed good initial binding affinity and significant ligand flexibility in the latter half of the 100ns simulation which highly suggest potential for further optimization such as facilitating protein-protein interactions or as potential drug delivery medium.
DOI: 10.6084/m9.figshare.28621262.v1
title: Figure data for paper DOI 10.1016/j.ynexs.2025.100060

description: This research tackles the challenges of estimating Building-Integrated Photovoltaics (BIPV) potential across various temporal and spatial scales, accounting for different geographical climates and urban morphology. We introduce a holistic methodology for evaluating BIPV potential, integrating 3D building footprint models with diverse meteorological data sources to account for dynamic shadow effects. The approach enables the assessment of PV potential on facades and rooftops at different levels—individual buildings, urban blocks, and cities globally. Through an analysis of 120 typical cities around the globe, we highlight the importance of 3D building forms, cityscape morphology, and geographic positioning in measuring BIPV potential at various levels. In particular, within the analyzed areas, our study reveals that the total solar radiation received by facades is highly competitive with that received by rooftops, showcasing an average facade-to-rooftop ratio of 100.7%. Moreover, 35.9% of the facades receive even more total radiation than rooftops, further emphasizing their potential as viable solar energy surfaces. Despite the generally lower conversion efficiency of facade PV systems compared to rooftop installations, our simulation results indicate that the average ratio of facade PV potential to rooftop PV potential remains approximately 68.2%. Additionally, approximately 17.5% of the analyzed samples demonstrate even higher facade PV potentials compared to rooftop installations. This finding underscores the strategic importance of integrating facade PV applications to enhance the overall urban sustainable energy systems strategy.
DOI: 10.6084/m9.figshare.25966063.v1
title: Zebrafish 6-hpf scRNA&ATAC Seurat object

description: Seurat object of zebrafish scRNA&ATAC data
DOI: 10.17632/3cd2b8ktpz
title: Photochemical Box Model Santiago

description: These files have been prepared for the paper entitled "Comparative ozone production sensitivity to NOx and VOCs in Quito, Ecuador and Santiago, Chile" submitted to Atmospheric Chemistry and Physics in March, 2025.
 
Authors: María Cazorla1, Melissa Trujillo1, Rodrigo Seguel2,3, Laura Gallardo2,3
 
1Universidad San Francisco de Quito USFQ, Instituto de Investigaciones Atmosféricas, Quito, Ecuador
2Center for Climate and Resilience Research (CR2), Universidad de Chile, Santiago, Chile
3Departamento de Geofísica, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Santiago, Chile

This dataset belongs to a comparative analysis of ozone production rates in Quito, Ecuador and Santiago, Chile. Preprint available at: https://doi.org/10.5194/egusphere-2024-3720 

Here we provide the MATLAB code and files used to run the model. Additionally, files can be found in the path: Photochemical_Model_Quito_Santiago&gt;Quito Input Files F0AM, at https://observaciones-iia.usfq.edu.ec/

Files

input_scl.mat: complete dataset with 10-minute resolution of meteorological and air quality variables for Santiago.

MX50_minmax.mat: complete dataset with 10-minute resolution of VOCs (percentile 50) for Santiago.

Santiago_model.m: model run, use with input_scl.mat, MX50_minmax.mat, and mcm_subset.m. This is an executable file for the F0AM (Framework for 0-D Atmospheric Modeling) (Wolfe et al., 2016)

mcm_subset.m: MCMv331 mechanism with all the chemical species used. This mechanism is called in Santiago_model.m. The chemical mechanistic information was taken from the Master Chemical Mechanism, MCM v3.3.1 (Bloss et al., 2005; Jenkin et al., 1997, 2003, 2015; Saunders et al., 2003), via website: www.mcm.york.ac.uk. 

References

Bloss, C., Wagner, V., Jenkin, M. E., Volkamer, R., Bloss, W. J., Lee, J. D., Heard, D. E., Wirtz, K., Martin-Reviejo, M., Rea, G., Wenger, J. C., and Pilling, M. J.: Development of a detailed chemical mechanism (MCMv3.1) for the atmospheric oxidation of aromatic hydrocarbons, Atmos Chem Phys, 5, 641–664, https://doi.org/10.5194/acp-5-641-2005, 2005.

Wolfe, G. M., Marvin, M. R., Roberts, S. J., Travis, K. R., and Liao, J.: The Framework for 0-D Atmospheric Modeling (F0AM) v3.1, Geosci Model Dev, 9, 3309–3319, https://doi.org/10.5194/gmd-9-3309-2016, 2016.
DOI: 10.6084/m9.figshare.27152376.v1
title: Pilot Study Datasets and R-code

description: These datasets were produced from a pilot study conducted in 2024 where drop-sheeting was assessed as a novel sampling method for surveying insects within macadamia orchards. Five drop-sheet sheet size treatments were compared for their ability to represent insect communities effectively and efficiently.
DOI: 10.17632/dnx6gmb6bg
title: Data for: Is Knowledge Powerful? Evidence from Financial Education and Earnings Quality

description: Data set for models of accounting accruals, loss avoidance, Basu's earnings conservatism and accrual based earnings conservatism
DOI: 10.6084/m9.figshare.21937157.v2
title: PADAPT 1.0 – the Pannonian Dataset of Plant Traits

description: PADAPT, the Pannonian Dataset of Plant Traits relies on regional data sources and collates data on 54 traits and attributes of the plant species of the Pannonian region. The current version covers approximately 90% of the species of the region and consists of 126,337 records on 2745 taxa. By including species of the eastern part of Europe not covered by other databases, PADAPT can facilitate studying the flora and vegetation of the eastern part of the continent.
DOI: 10.6084/m9.figshare.22581160.v2
title: Student-teachers' final report

description: This is the final report student teachers wrote in which they analyzed the design, implementation and evaluation of the classroom project during the Teaching Practicum.
DOI: 10.17632/yrr2skyftt
title: Data for: Spatial-temporal Evolution of Urban Heat Island in Xi’an from 2006 to 2015