cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5dz0326x
title: MassIVE Reanalysis RMSV000000354.3817 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, OR52W1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5959c82j
title: MassIVE Reanalysis RMSV000000354.3819 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, NXPH3 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c55h7bv1q
title: MassIVE Reanalysis RMSV000000354.3822 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CCDC50 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c51r6n17c
title: MassIVE Reanalysis RMSV000000354.3821 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, EIF3L [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5x05xd3s
title: MassIVE Reanalysis RMSV000000354.3818 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TEKT3 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5s756k9d
title: MassIVE Reanalysis RMSV000000354.3820 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, UFC1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5ng4gs58
title: MassIVE Reanalysis RMSV000000354.3823 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PNO1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19209858
title: Esophagus Transcriptome & Annotation

description: Esophagus transcriptome and annotation for lake sturgeon.
DOI: 10.6084/m9.figshare.19209858.v1
title: Esophagus Transcriptome & Annotation

description: Esophagus transcriptome and annotation for lake sturgeon.
DOI: 10.6084/m9.figshare.19209741
title: Anterior Intestine Transcriptome & Annotation

description: Anterior intestine transcriptome and annotation for lake sturgeon.
DOI: 10.6084/m9.figshare.19209741.v1
title: Anterior Intestine Transcriptome & Annotation

description: Anterior intestine transcriptome and annotation for lake sturgeon.
DOI: 10.25345/c5hq3s01j
title: MassIVE Reanalysis RMSV000000354.3825 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, DNAJC1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5cz32575
title: MassIVE Reanalysis RMSV000000354.3826 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, WDR1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c58911r55
title: MassIVE Reanalysis RMSV000000354.3824 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, GPN2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25919/z6xg-wj94
title: Parkes observations for project PX600 semester 2020APRS_62

description: The Galactic Center (GC) is a key target for the radio component of Breakthrough Listen (BL) program. Offering the largest amount of stars in any given direction in the sky, the GC is widely cited as a location believed to harbour advanced civilizations, and it is also the most energetic region in the Milky Way. We aim to conduct BL-GC Survey with Parkes radio telescope for around 350 hours. We will cover the frequency range from 700 MHz to 4 GHz, utilizing the newly installed ultra-wideband receiver. Our team has already leveraged both standard and bespoke tools to construct a flexible software stack to search data for signals of interest. We will look for signals from extraterrestrial intelligence (ETI) by searching for both simple narrow-band signals and complex modulated signals. Along with that, as an ancillary science, we will also search for accelerated pulsars — likely orbiting a supermassive black hole at the centre of the Milky Way Galaxy. Data products produced during this program will also be publically available to engage larger pulsar community
DOI: 10.25345/c54j09z11
title: MassIVE Reanalysis RMSV000000354.3827 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, F9 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c50r9m48m
title: MassIVE Reanalysis RMSV000000354.3828 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, MARVELD2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5w08wh3j
title: MassIVE Reanalysis RMSV000000354.3829 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TSSC1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6209443
title: Myomyrus macrops decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6209442
title: Myomyrus macrops decontaminated FSCR

description: .
DOI: 10.3886/e159621v1
title: Socio-economic inequalities in clustering of health compromising behaviours among Indian adolescents

description: A cross-sectional survey was undertaken among adolescents (15–19 years of age) from four different neighborhoods of Delhi and belonging to different socioeconomic groups. The sampling frame included four strata based on the area of residence, namely urban, rural, urban slums (a compact area of at least 300 population or about 60–70 households of poorly built congested tenements with inadequate infrastructure), and resettlement colonies (legalized settlement by the government with a slightly better off infrastructure than slums).<br><br>A multistage random sampling technique was used to obtain the required sample from each of the four strata – urban, rural, slums, and resettlement colonies. The urban areas were divided into municipal wards. Two wards were randomly selected from the listed wards. From the rural areas, two “village panchayats” which are the local administrative units were randomly picked. The enlisted slums and resettlement colonies by the Government of Delhi were used to identify two slums and resettlement colonies. Census was conducted in each of the selected areas to list households with eligible adolescents. The eligible adolescents were then randomly picked from the list by simple random sampling through system-generated random numbers in STATA (version 13.0 StataCorp, 4905 Lakeway Drive, College Station, Texas 77845 USA). <br><br><br>
DOI: 10.25824/redu/8oigc9
title: Proteína do retículo endoplasmático ERp29 e tumores de cabeça e pescoço

description: A ERp29 é uma proteína chaperona envolvida no processo de enovelamento e secreção de proteínas. O papel da ERp29 no desenvolvimento e na progressão tumoral é controverso e sua função em tumores de cabeça e pescoço (CP) ainda é desconhecida. Assim, os objetivos do presente estudo são os de avaliar o papel da ERp29 na modulação do ciclo celular, da apoptose, da proliferação celular, da migração celular e do estresse do retículo endoplasmático (RE); identificar genes e microRNAs associados com a expressão diferencial da ERp29 e identificar proteínas que interagem com a ERp29. A superexpressão e o silenciamento do gene ERP29 serão induzidos por meio de técnicas de clonagem em linhagens de células SCC-9, SCC-25, CAL-27 (tumores de língua) e FaDu (câncer de faringe), sensíveis e resistentes à cisplatina. As células modificadas serão submetidas aos ensaios de citometria de fluxo para detecção do ciclo celular e da apoptose. Os ensaios de proliferação e migração celular e do estresse do RE serão realizados por meio da técnica de contagem de células, da técnica de “wound healing” e tunicamicina, respectivamente. A identificação de genes e de microRNAs associados com a expressão diferencial do ERp29 será realizada por meio de ensaios com microarranjos. A identificação de proteínas que interagem com a ERp29 será realizada por meio de ensaios de co-imunoprecipitação. Os resultados das diferenças entre os grupos serão avaliados por meio do teste t ou Mann-Whitney. Ao término do estudo, esperamos identificar um possível alvo terapêutico para o tratamento de tumores de CP.
DOI: 10.6084/m9.figshare.17049761
title: EYET.zip

description: Eye-tracker data using Tobii x3-120 in OsloMet.
DOI: 10.6084/m9.figshare.17049761.v1
title: EYET.zip

description: Eye-tracker data using Tobii x3-120 in OsloMet.
DOI: 10.25345/c5r785p95
title: MassIVE MSV000088880 - Gut microbiota metabolites present in pregnant and breastfeeding period Women
title: Human gut microbiota metabolites associated with pregnancy and lactation stages.
DOI: 10.6084/m9.figshare.16417249
title: Roquefortine C in blue-veined and soft-ripened Cheeses in the USA

description: Certain fungi can produce secondary metabolites that are toxic, mycotoxins. Two groups of cheeses where fungi are used for ripening are the blue-veined cheeses (<i>Penicillium roqueforti</i>) and the “soft-ripened” cheeses (<i>P. camemberti)</i>. An enzyme-linked immunosorbent assay was used to screen for the mycotoxin roquefortine C (ROQC) in 202 samples of cheeses sold in the United States. Of these 152 were blue-veined cheeses, 46 were soft-ripened cheeses and 4 were other varieties of mould-ripened cheeses. ROQC was not detected in any of the soft-ripened cheeses, at a limit of detection of 1.8 µg/kg. ROQC was found in 151 of 152 blue-veined cheeses. The maximum level found was 6,630 µg/kg (median 903 µg/kg, average of positives 1430 µg/kg, limit of quantitation 6.9 µg/kg). These levels are consistent with the levels found previously in blue-veined cheeses in the United Kingdom and Europe, which have generally been considered non-hazardous for human consumption.
DOI: 10.6084/m9.figshare.16417249.v1
title: Roquefortine C in blue-veined and soft-ripened Cheeses in the USA

description: Certain fungi can produce secondary metabolites that are toxic, mycotoxins. Two groups of cheeses where fungi are used for ripening are the blue-veined cheeses (<i>Penicillium roqueforti</i>) and the “soft-ripened” cheeses (<i>P. camemberti)</i>. An enzyme-linked immunosorbent assay was used to screen for the mycotoxin roquefortine C (ROQC) in 202 samples of cheeses sold in the United States. Of these 152 were blue-veined cheeses, 46 were soft-ripened cheeses and 4 were other varieties of mould-ripened cheeses. ROQC was not detected in any of the soft-ripened cheeses, at a limit of detection of 1.8 µg/kg. ROQC was found in 151 of 152 blue-veined cheeses. The maximum level found was 6,630 µg/kg (median 903 µg/kg, average of positives 1430 µg/kg, limit of quantitation 6.9 µg/kg). These levels are consistent with the levels found previously in blue-veined cheeses in the United Kingdom and Europe, which have generally been considered non-hazardous for human consumption.
DOI: 10.25345/c5mg7fw51
title: MassIVE MSV000088881 - GNPS PASSIFLORA DADOS POSITIVO
title: This study aims to determine the metabolic profile of native species of Passiflora L. in Brazil, in order to correlate their chemical composition with a commercial species. For this, samples of exsiccates were analyzed by mass spectrometry and molecular networks. The sample of exsiccates will be created by HPLC coupled to MS.
DOI: 10.5281/zenodo.6192312
title: Data for Crystallographic orientation mapping of lizardite serpentinite by Raman spectroscopy

description: The serpentine mineral lizardite displays strong Raman anisotropy in the OH-stretching region, resulting in significant wavenumber shifts (up to c. 14.5 cm <sup>-1</sup>) that depend on the orientation of the impinging excitation laser relative to the crystallographic axes. We quantified the relationship between crystallographic orientation and Raman wavenumber using well-characterised samples of Monte Fico lizardite by applying Raman spectroscopy and electron backscatter diffraction (EBSD) mapping on thin sections of polycrystalline samples and grain mounts of selected single crystals, as well as by a spindle stage Raman study of an oriented cylinder drilled from a single crystal. We demonstrate that the main band in the OH-stretching region undergoes a systematic shift that depends on the inclination of the c-axis of the lizardite crystal. The data are used to derive an empirical relationship between the position of this main band and the c-axis inclination of a measured lizardite crystal: y = 14.5 cos<sup>4 </sup>(0.013 x + 0.02) + (3670 ± 1), where y is the inclination of the c-axis with respect to the normal vector (in degrees) and x the main band position (wavenumber in cm <sup>-1</sup>) in the OH-stretching region. This new method provides a simple and cost-effective technique for measuring and quantifying the crystallographic orientation of lizardite-bearing serpentinite fault rocks, which can be difficult to achieve using EBSD alone. In addition to the samples used to determine the above empirical relationship, we demonstrate the applicability of the technique by mapping the orientations of lizardite in a more complex sample of deformed serpentinite from Elba Island, Italy.
DOI: 10.5281/zenodo.6192311
title: Data for Crystallographic orientation mapping of lizardite serpentinite by Raman spectroscopy

description: The serpentine mineral lizardite displays strong Raman anisotropy in the OH-stretching region, resulting in significant wavenumber shifts (up to c. 14.5 cm <sup>-1</sup>) that depend on the orientation of the impinging excitation laser relative to the crystallographic axes. We quantified the relationship between crystallographic orientation and Raman wavenumber using well-characterised samples of Monte Fico lizardite by applying Raman spectroscopy and electron backscatter diffraction (EBSD) mapping on thin sections of polycrystalline samples and grain mounts of selected single crystals, as well as by a spindle stage Raman study of an oriented cylinder drilled from a single crystal. We demonstrate that the main band in the OH-stretching region undergoes a systematic shift that depends on the inclination of the c-axis of the lizardite crystal. The data are used to derive an empirical relationship between the position of this main band and the c-axis inclination of a measured lizardite crystal: y = 14.5 cos<sup>4 </sup>(0.013 x + 0.02) + (3670 ± 1), where y is the inclination of the c-axis with respect to the normal vector (in degrees) and x the main band position (wavenumber in cm <sup>-1</sup>) in the OH-stretching region. This new method provides a simple and cost-effective technique for measuring and quantifying the crystallographic orientation of lizardite-bearing serpentinite fault rocks, which can be difficult to achieve using EBSD alone. In addition to the samples used to determine the above empirical relationship, we demonstrate the applicability of the technique by mapping the orientations of lizardite in a more complex sample of deformed serpentinite from Elba Island, Italy.
DOI: 10.6073/pasta/2093518289aace7e7620eccbf02c0d01
title: Virgin Islands National Park: Coral Reef: Decadal-scale changes in community structure from 1987 to 2011

description: These time series data sample percent cover of Scleractinian corals by genus measured from photo quadrats. Percent cover is given for each quadrat, each site, each year from 1987 to 2011. Counts of juvenile corals conducted in situ and small colonies less than 4 cm diameter are pooled from all sites. Supplementary data include in situ seawater temperature daily mean from 1989 to 2011. These data were used to create the figures in Edmunds, P.J., 2013, Decadal-scale changes in the community structure of coral reefs in St. John, US Virgin Islands, Marine ecology Progress Series. doi:10.3354/meps10424