cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25550/3-kb0w
title: CC

description: **Abstract(s):** **(1) The Collaborative Cross, a community resource for the genetic analysis of complex traits:** The goal of the Complex Trait Consortium is to promote the development of resources that can be used to understand, treat and ultimately prevent pervasive human diseases. Existing and proposed mouse resources that are optimized to study the actions of isolated genetic loci on a fixed background are less effective for studying intact polygenic networks and interactions among genes, environments, pathogens and other factors. The Collaborative Cross will provide a common reference panel specifically designed for the integrative analysis of complex systems and will change the way we approach human health and disease. **(2) The genome architecture of the Collaborative Cross mouse genetic reference population:** The Collaborative Cross Consortium reports here on the development of a unique genetic resource population. The Collaborative Cross (CC) is a multiparental recombinant inbred panel derived from eight laboratory mouse inbred strains. Breeding of the CC lines was initiated at multiple international sites using mice from The Jackson Laboratory. Currently, this innovative project is breeding independent CC lines at the University of North Carolina (UNC), at Tel Aviv University (TAU), and at Geniad in Western Australia (GND). These institutions aim to make publicly available the completed CC lines and their genotypes and sequence information. The consortium genotyped, and report here, results from 458 extant lines from UNC, TAU, and GND using a custom genotyping array with 7500 SNPs designed to be maximally informative in the CC and used a novel algorithm to infer inherited haplotypes directly from hybridization intensity patterns. The authors identified lines with breeding errors and cousin lines generated by splitting incipient lines into two or more cousin lines at early generations of inbreeding. The consortium then characterized the genome architecture of 350 genetically independent CC lines. Results showed that founder haplotypes are inherited at the expected frequency, although we also consistently observed highly significant transmission ratio distortion at specific loci across all three populations. On chromosome 2, there is significant overrepresentation of WSB/EiJ alleles, and on chromosome X, there is a large deficit of CC lines with CAST/EiJ alleles. Linkage disequilibrium decays as expected and they saw no evidence of gametic disequilibrium in the CC population as a whole or in random subsets of the population. Gametic equilibrium in the CC population is in marked contrast to the gametic disequilibrium present in a large panel of classical inbred strains. Finally, the authors discuss access to the CC population and to the associated raw data describing the genetic structure of individual lines. Integration of rich phenotypic and genomic data over time and across a wide variety of fields will be vital to delivering on one of the key attributes of the CC, a common genetic reference platform for identifying causative variants and genetic networks determining traits in mammals.
DOI: 10.25550/3-kb1j
title: BBDS

description: This unpublished, early postnatal (~P20) dataset is based on mutations in the [Fgfr2 gene](https://www.alliancegenome.org/gene/MGI:95523), which: Enables fibroblast growth factor binding activity. Involved in several processes, including fibroblast growth factor receptor signaling pathway; forebrain generation of neurons; and positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including animal organ development; positive regulation of cell population proliferation; and regulation of signal transduction. Located in excitatory synapse and nucleus. Is expressed in several structures, including alimentary system; brain; genitourinary system; limb; and sensory organ. Used to study Beare-Stevenson cutis gyrata syndrome; Crouzon syndrome; Pfeiffer syndrome; acrocephalosyndactylia; and intestinal atresia. Human ortholog(s) of this gene implicated in several diseases, including Beare-Stevenson cutis gyrata syndrome; Jackson-Weiss syndrome; LADD syndrome; reproductive organ cancer (multiple); and synostosis (multiple). Orthologous to human FGFR2.
DOI: 10.25550/3-kb1w
title: Brachymorph

description: **Abstract(s):** **(1) The brachymorph mouse and the developmental-genetic basis for canalization and morphological integration:** Although it is well known that many mutations influence phenotypic variability as well as the mean, the underlying mechanisms for variability effects are very poorly understood. The brachymorph (bm) phenotype results from an autosomal recessive mutation in the phosphoadenosine-phosphosulfate synthetase 2 gene (Papps2). A major cranial manifestation is a dramatic reduction in the growth of the chondrocranium which results from undersulfation of glycosaminoglycans (GAGs) in the cartilage matrix. Hallgrimsson et al. (2006) found that this reduction in the growth of the chondrocranium is associated with an altered pattern of craniofacial shape variation, a significant increase in phenotypic variance and a dramatic increase in morphological integration for craniofacial shape. Both effects are largest in the basicranium. The altered variation pattern indicates that the mutation produces developmental influences on shape that are not present in the wildtype. As the mutation dramatically reduces sulfation of GAGs, the authors infer that this influence is variation among individuals in the degree of sulfation, or variable expressivity of the mutation. This variation may be because of genetic variation at other loci that influence sulfation, environmental effects, or intrinsic effects. Hallgrimsson and colleagues infer that chondrocranial development exhibits greater sensitivity to variation in the sulfation of chondroitin sulfate when the degree of sulfation is low. At normal levels, sulfation probably contributes minimally to phenotypic variation. This case illustrates canalization in a particular developmental-genetic context. **(2) Spatial packing, cranial base angulation, and craniofacial shape variation in the mammalian skull:** The hypothesis that variation in craniofacial shape within and among species is influenced by spatial packing has a long history in comparative anatomy, particularly in terms of primates. This study develops and tests three alternative models of spatial packing to address how and to what extent the cranial base angle is influenced by variation in brain and facial size. The models are tested using mouse strains with different mutations affecting craniofacial growth. Although mice have distinctive crania with small brains, long faces, and retroflexed cranial bases, the results of the study indicate that the mouse cranial base flexes to accommodate larger brain size relative to cranial base length. In addition, the mouse cranial base also extends, but to a lesser degree, to accommodate larger face size relative to cranial base length. In addition, interactions between brain size, face size, and the widths and lengths of the components of the cranial base account for a large percentage of variation in cranial base angle. The results illustrate the degree to which the cranial base is centrally embedded within the covariation structure of the craniofacial complex as a whole.
DOI: 10.25550/3-kb44
title: RASopathy

description: This unpublished dataset is based on the [Hras gene](https://www.alliancegenome.org/gene/MGI:96224), which: Enables GTP binding activity. Involved in Ras protein signal transduction. Acts upstream of or within several processes, including defense response to protozoan; intracellular signal transduction; and positive regulation of interferon-gamma production. Predicted to be located in Golgi apparatus; cytosol; and nucleoplasm. Predicted to be active in glutamatergic synapse and plasma membrane. Is expressed in several structures, including central nervous system; early embryo; metanephros; sensory organ; and tooth. Used to study Costello syndrome; high grade glioma; and malignant astrocytoma. Human ortholog(s) of this gene implicated in several diseases, including Costello syndrome; autistic disorder; carcinoma (multiple); epidermal nevus; and large congenital melanocytic nevus. Orthologous to human HRAS.
DOI: 10.25550/3-kb4j
title: Lrp

description: This unpublished dataset is based on the [Lrp2 gene](https://www.alliancegenome.org/gene/MGI:95794), which is: Predicted to enable several functions, including PDZ domain binding activity; chaperone binding activity; and insulin-like growth factor I binding activity. Involved in several processes, including circulatory system development; nervous system development; and reproductive structure development. Acts upstream of or within several processes, including animal organ development; circulatory system development; and vitamin metabolic process. Located in several cellular components, including brush border membrane; clathrin-coated pit; and cytoplasmic vesicle. Is expressed in several structures, including egg cylinder; heart and pericardium; metanephros; ureter; and ventricular layer. Used to study Donnai-Barrow syndrome; Fanconi syndrome; and degenerative myopia. Human ortholog(s) of this gene implicated in Donnai-Barrow syndrome and autoimmune thyroiditis. Orthologous to human LRP2.
DOI: 10.5281/zenodo.4738906
title: Knutson et al 2020 Tropical Cyclone Projections Data v0.1

description: This data, and the permission to share it, was kindly provided to me by Tom Knutson. This is the data used to produce Figs 1b, 2b, 3b and 4b in Knutson et al (2020) (DOI: 10.1175/BAMS-D-18-0194.1). I use the data myself in: DOI: TBD.
description: Closed access for now until I submit the accompanying paper.
description: {"references": ["DOI:\u00a010.1175/BAMS-D-18-0194.1."]}
DOI: 10.6084/m9.figshare.16691578
title: data.xlsx

description: This Data was gathered to to investigate the effect of soft drinks on the surface roughness of dental enamel and compare the effect of two kinds of soft drinks.12 Samples are there with three rotations ( Bassline, 1st reading and 2nd reading)
DOI: 10.6084/m9.figshare.16691578.v1
title: data.xlsx

description: This Data was gathered to to investigate the effect of soft drinks on the surface roughness of dental enamel and compare the effect of two kinds of soft drinks.12 Samples are there with three rotations ( Bassline, 1st reading and 2nd reading)
DOI: 10.25646/9098
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.17632/x7fvw5ds5v.1
title: Environmental and Economic assessment of bio-succinic acid production

description: Data behind economic and environmental assessment for bio-succinic acid production at different TRLs.
DOI: 10.17632/zcbrn8tsy4.3
title: Global Solar Irradiation on horizontal surfaces at 22 meteorological stations in northern Spain

description: Global solar irradiation and temperature data used to validate a temperature-based model.

The tables show data and results that can be obtained using the equations and definitions provided in the Nomenclature section.

Data from eight weather stations for the same time period (2003-2016) are used to build the model.

The model obtained is validated with data from another 14 stations.

The set of stations covers a distance of about 1000 km in the north of Spain. 

A table with error calculations is included.
DOI: 10.17632/nzpd6k32gz.1
title: Intrinsic bias at non-canonical, β-arrestin-coupled seven transmembrane receptors. Pandey et al., 

description: Original data for the Western blot images and confocal microscopy images associated with the manuscript.
DOI: 10.17632/hx54vktrrd.1
title: Price Discovery

description: The data set contains future and spot price for Indian Markets.
DOI: 10.17632/6ffk3463bt.2
title: Statecraft under the delibration of the fundamentals

description: How the international system correlates with other specific aspects
of each country? Can integration be realized with a particular policy?
Do fundamentals differ from each country or they are similar with
a contrastive precedence? Questions are as wide as their responses
as each country has its own characteristics and therefore should have
its own system allowing a suitable management of resources while
ensuring integration worldwide. The international system is not the
cause of the current condition, but the consequence of the interaction
between its components, hence it is subject to change, notably with
the relations establishing the current form of globalization
and policies adapted by each country.
This work is generally devoted to the study of the functioning of the
international system by representing the aspects of the country as an entity in the
general and historical development.
DOI: 10.17632/vtf64t8f6r.1
title: 1. The 10 top-ranked Chinese, US and Italian universities which publish the UPOCS online in the academic years of 2017-2018, 2018-2019 and 2019-2020.

description: The 10 top-ranked (QS 2021) Chinese, US and Italian universities which publish the UPOCS online in the academic years of 2017-2018, 2018-2019 and 2019-2020.
DOI: 10.17632/ft4v6fgm6p.1
title: Eurostat data for Hierarchical Time Series Cluster analysis and script

description: Contains:
1. Three timeseries datasets from Eurostat data in three dimensions:
dim1: Economic Structure
dim2: Energy Policy
dim3: Energy Consumption
3. Qualitative three-dimensional dataset.
4. R-Script with code.
DOI: 10.17632/d9wvsvtyrp.7
title: Revitalization skywalk bandung to 2022

description: Skywalk Bandung is well known as a well-known city icon and as a new tourist area in the city of Bandung. Completed and inaugurated 2017 Skywalk Bandung is a mandatory destination for tourists to visit, because it was developed in the Cihampelas area which is an official tourist destination in Bandung. After 2 years of inauguration, the Bandung skywalk has experienced a decline in visitors since its inauguration. Changing the Cipaganti road to one lane, the adjacent Cihampelas road into one lane is the same as Cihampelas making an alternative for tourists to Bandung, changing through the Cihampelas street after traveling to the Lembang area. lane transfer to Jl. Cipaganti being a single lane, helping to deal with congestion and reducing tourists to Jl. Cihampelas, so the construction of the skywalk is less useful than its original purpose. Through the journal that we convey today, it is hoped that it can become a reference method that can be used by the Bandung city government to be able to revive the city facilities that are not functioning properly with the initial plan targeted by the Bandung City Government
DOI: 10.17632/zs862fg3xs.1
title: Cirrhosis of the liver causes erectile dysfunction

description: Materials related to erectile dysfunction caused by liver cirrhosis
DOI: 10.17632/8xwfxctd7h.1
title: Sensitive microbes drive soil multifunctionality mediated by organic matter and salinity

description: a dataset for the paper of "Sensitive microbes drive soil multifunctionality mediated by organic matter and salinity"
DOI: 10.17632/byxw9bx73y.3
title: supplementary materials to https://doi.org/10.1016/j.jenvman.2020.111252

description: This data describes the supplementary materials (additional Figures, and Tables) for the article https://doi.org/10.1016/j.jenvman.2020.111252 
Thermoacidophilic effective microbes (tEM) were used to enhance the composting process of lignocellulosic waste. Composting with tEM slightly reduced NH3 emission during the composting process while CH4, and CO2 patterns positively correspond to the rate of composting, with higher emissions in tEM treatment during 60d – 90d composting. Compost microbial evolution based metagenomic DNA sequencing and culture-based microbial enumeration indicate higher abundance and diversity of microbes in tEM treated groups especially at thermophilic temperatures. Chemical analysis showed higher rate of mineralization in tEM treated compost compared to control group while the heavy metal content was below the international threshold levels in both treatment and control. Moreover, germination index (Gi) and global germination index (GI) were higher in tEM treated compost compared to control group. The data is important for evaluating composting efficiency and quality of the final compost product.
DOI: 10.5517/ccdc.csd.cc129hnj
title: CCDC 992237: Experimental Crystal Structure Determination

description: Related Article: Zhi-qing Xia, Shi-qin Zhu, Wei-hong Zhu|2015|Jingxi Huagong|32|700|
DOI: 10.6073/pasta/624d434f50bae230cdde3ce9b3f3f67e
title: Luquillo canopy trimming experiment - meteorological data, soil sensor, and cannopy measurements

description: This data publication contains average daily means for field and satellite data from 3 treated and 3 control plots from the Canopy Trimming Experiment (CTE) located near El Verde Field Station (419 meters; 18°20’ N, 65°49’ W) in the Luquillo Experimental Forest (El Yunque National Forest), Puerto Rico collected from 2003 through 2019. In spring of 2005 (CTE1) and December of 2014 (CTE2), in 0.09 hectare (ha) square plots near the El Verde Field Station the forest canopy was trimmed and the canopy debris was littered to the forest floor. The plot size and trim amounts were based on the patch disturbance after the two most recent hurricanes before 2017, both category 3 hurricanes at the location of El Verde: Hugo in September 1989, and Georges in September 1998 (Zimmerman et al. 2014). Details of the trimming and littering treatment, as well as the biotic response to the 2005 experiment have been extensively documented (Richardson et al. 2010; Shiels et al. 2014, 2015; Shiels and González 2014). The data were collected in the inner 0.04 ha quadrants of the 0.09 ha trimmed plots to minimize edge effects. There were 3 sets of control and treated plots, with each set near El Verde field station. Field data include: solar radiation, throughfall, air temperature, soil temperature, relative humidity shallow soil, volumetric water content, soil profile volumetric water content, canopy leaf saturation, litter leaf saturation, and above canopy air temperature. Satellite data include: Moderate Resolution Imaging Spectroradiometer (MODIS) leaf area index converted into solar radiation, MODIS land surface temperature, and Advanced Microwave Scanning Radiometer (AMSR) soil volumetric water content.
DOI: 10.5281/zenodo.5534184
title: REFLOW ETN. ESR19. DPS Analysis

description: The dataset includes information on the physical and chemical characterization of different DPS and STRUBIAS products.
DOI: 10.18112/openneuro.ds003816.v1.0.1
title: Loving Kindness Meditation for Mental Health: long-term and short-term effect
DOI: 10.5281/zenodo.5534245
title: Replication package of Van de Steeg 2021 ACS Energy Letters 6, 2876−2881

description: Title: Redefining the Microwave Plasma-Mediated CO2 Reduction Efficiency Limit: The Role of O−CO2 Association<br> Authors: Alex van de Steeg, Pedro Viegas, Ana Silva, Tom Butterworth, Alexander van Bavel, Joost Smits, Paola Diomede, Mauritius van de Sanden, and Gerard van Rooij<br> Journal: ACS Energy Letters<br> Date: 2021-09-28<br> Description: <br> In this letter Raman scattering and 0D modeling are used to assess the oxygen atom quenching dynamics in CO2 microwave plasma. <br> The measurements reveal the important role of O-CO2 association as O-recombination / CO production reaction, thereby <br> forcing a redefinition of the energy efficiency of thermal CO2 dissociation, as before this reaction was not taken into account.<br> Access rights: Open<br> License: Creative Commons Attribution 4.0 <br> This replication package consists of the raw data used for the creation of each figure, ie measurement data, together with the python scripts used for data treatment. Most raw data is in the form of .spe files. The python library (by D.v.d. Bekerom) calibrate_fiber_pos is always used to read these camera images. When applicable, the output files of the model of P. Viegas are given. More details on this model input can be found in the separate publication found in https://doi.org/10.1088/1361-6595/abb41c , or upon request to the author.
DOI: 10.5281/zenodo.5534244
title: Replication package of Van de Steeg 2021 ACS Energy Letters 6, 2876−2881

description: Title: Redefining the Microwave Plasma-Mediated CO2 Reduction Efficiency Limit: The Role of O−CO2 Association<br> Authors: Alex van de Steeg, Pedro Viegas, Ana Silva, Tom Butterworth, Alexander van Bavel, Joost Smits, Paola Diomede, Mauritius van de Sanden, and Gerard van Rooij<br> Journal: ACS Energy Letters<br> Date: 2021-09-28<br> Description: <br> In this letter Raman scattering and 0D modeling are used to assess the oxygen atom quenching dynamics in CO2 microwave plasma. <br> The measurements reveal the important role of O-CO2 association as O-recombination / CO production reaction, thereby <br> forcing a redefinition of the energy efficiency of thermal CO2 dissociation, as before this reaction was not taken into account.<br> Access rights: Open<br> License: Creative Commons Attribution 4.0 <br> This replication package consists of the raw data used for the creation of each figure, ie measurement data, together with the python scripts used for data treatment. Most raw data is in the form of .spe files. The python library (by D.v.d. Bekerom) calibrate_fiber_pos is always used to read these camera images. When applicable, the output files of the model of P. Viegas are given. More details on this model input can be found in the separate publication found in https://doi.org/10.1088/1361-6595/abb41c , or upon request to the author.
DOI: 10.6073/pasta/2038da06c9875130a1bd6673ef1202a8
title: Tropical green roofs vegetation dynamics data

description: This publication contains data collected in 2017 from three green roofs at the International Institute of Tropical Forestry in San Juan, Puerto Rico and one green roof at the Social Sciences Faculty of the University of Puerto Rico in Río Piedras. Data from these extensive green roofs include substrate depth as well as species counts within a sampled quadrant, as well as species identification information.