cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7628268
title: Seed coating for Brassica napus L.

description: These .xlsx files contain results of seed coating analyses in canola (<em>B. napus</em> L.) plants. 1. Biomass.xlsx and Length.xlsx files include the results showing the effect of seed coating on canola seedlings growth. 2. Gene_expression.xlsx file includes the relative expression level of <em>BnRSH</em> genes in the canola seedlings germinated from uncoated (control) or coated seeds. 3. Germination.xlsx file includes final germination percentage (FGP), index of germination velocity (IGV), and mean germination time (MGT) of canola seeds depending on seed coating. 4. Seed_weight.xlsx file includes the seed weight depending on different variants of seed coating. 5. SOD.xlsx file includes results of the measurements of the activity of SOD in canola seedlings germinated from uncoated and coated seeds. 6. Fungi_growth.xlsx file includes results showing the growth inhibition of fungi plant pathogens species<em>.</em> <em>7. S</em>tatistical analysis.
DOI: 10.5281/zenodo.7599997
title: Reproducibility package for Using root economics traits to predict biotic plant soil-feedbacks

description: Using root economics space to predict biotic plant soil-feedbacks presents a novel framework linking below ground ecological theory to plant soil feedback effects. We show how to calculate root functional distance and location of two plant species in root economics space and how these measures can help to predict the strength and direction of the plant soil feedback between them. Contains data and scripts to reproduce analysis and figures for the manuscript (https://github.com/ggpmrutten/linkingRES-PSF)
description: {"references": ["Rutten & Allan 2022 Using root economics traits to predict plant soil-feedbacks https://doi.org/10.21203/rs.3.rs-1813185/v1"]}
DOI: 10.5519/qd.4w76dpaf
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (375 records)
DOI: 10.6084/m9.figshare.21616051
title: Digital image correlation to reveal mechanical anisotropy in 3D printing of polymers

description: In this work, we propose to study the mechanical anisotropy inferred in printed acrylonitrile butadiene styrene polymer using fused deposition modelling by combining digital image correlation and mechanical testing. Tensile specimens are printed utilising different design orientations and raster angles. Monitoring of deformed samples is performed and strain fields are derived for each configuration. The results show that a heterogeneous strain field develops leading to a more significant strain localisation for samples printed with the dimensions mainly aligned with the building direction. An optimal printing angle allowing the filament to be crossed at −45°/+45° shows the best behaviour even with a larger elongation at fracture compared to the raw material. The digital image correlation based on optical imaging indicates, however, scaling limits to reveal the effect of the filament orientation on strain localisation.
DOI: 10.6084/m9.figshare.21616051.v1
title: Digital image correlation to reveal mechanical anisotropy in 3D printing of polymers

description: In this work, we propose to study the mechanical anisotropy inferred in printed acrylonitrile butadiene styrene polymer using fused deposition modelling by combining digital image correlation and mechanical testing. Tensile specimens are printed utilising different design orientations and raster angles. Monitoring of deformed samples is performed and strain fields are derived for each configuration. The results show that a heterogeneous strain field develops leading to a more significant strain localisation for samples printed with the dimensions mainly aligned with the building direction. An optimal printing angle allowing the filament to be crossed at −45°/+45° shows the best behaviour even with a larger elongation at fracture compared to the raw material. The digital image correlation based on optical imaging indicates, however, scaling limits to reveal the effect of the filament orientation on strain localisation.
DOI: 10.6084/m9.figshare.20440266
title: Molecular phylogenetic assessment of the genus <i>Scutellinia</i> (Pezizales: Pyronemataceae)

description: The genus <i>Scutellinia</i> consists of cup fungi belonging to the <i>Pyronemataceae</i> (Ascomycota). It comprises more than 100 species with a worldwide distribution. Species delimitation is based on morphological characteristics of the ascocarps, such as spore size, form and ornamentation as well as size and morphology of hairs that typically cover the external surface of the ascoma. These characters are, however, highly variable and species recognition challenging. In this paper, ribosomal DNA traits such as the internal transcribed spacer and the large subunit ribosomal gene were sequenced in several <i>Scutellinia</i> samples and, along with all available sequences on public database, used to improve the knowledge about taxonomy and phylogeny of this genus. Based on sequence similarity and trees topology, about 50 phylogenetic species were recognized and their phylogenetic relationships disclosed.
DOI: 10.6084/m9.figshare.20440266.v1
title: Molecular phylogenetic assessment of the genus <i>Scutellinia</i> (Pezizales: Pyronemataceae)

description: The genus <i>Scutellinia</i> consists of cup fungi belonging to the <i>Pyronemataceae</i> (Ascomycota). It comprises more than 100 species with a worldwide distribution. Species delimitation is based on morphological characteristics of the ascocarps, such as spore size, form and ornamentation as well as size and morphology of hairs that typically cover the external surface of the ascoma. These characters are, however, highly variable and species recognition challenging. In this paper, ribosomal DNA traits such as the internal transcribed spacer and the large subunit ribosomal gene were sequenced in several <i>Scutellinia</i> samples and, along with all available sequences on public database, used to improve the knowledge about taxonomy and phylogeny of this genus. Based on sequence similarity and trees topology, about 50 phylogenetic species were recognized and their phylogenetic relationships disclosed.
DOI: 10.6084/m9.figshare.20528771
title: Evolutionary relationships of poorly known Aegean endemic monotypic genus <i>Microsciadium</i> (Apiaceae)

description: In this study, the Aegean endemic genus <i>Microsciadium</i> was first evaluated in light of both ribosomal and chloroplast DNA datasets. According to the literature, <i>Microsciadium minutum</i> was determined as <i>Cuminum minutum</i>, then transferred to <i>Carum</i> (as <i>C. minutum</i>), and then <i>Azorella</i> (as <i>A. minuta</i>). Interestingly, these three genera belong to different tribes, even to different subfamilies. Since the phylogenetic position of <i>Microsciadium</i> was unknown, we analyzed this monotypic genus with a broad sampling of Apiaceae based on rps16 intron and an internal transcribed spacer. <i>Microsciadium</i> is well nested in the tribe Pyramidoptereae in Apioideae based on both datasets. Also, this genus is closely related to <i>Hellenocarum</i>. In addition, the detailed description, photographs, and micrographs of <i>M. minutum</i> are presented. The name is lectotypified here.
DOI: 10.6084/m9.figshare.20528771.v1
title: Evolutionary relationships of poorly known Aegean endemic monotypic genus <i>Microsciadium</i> (Apiaceae)

description: In this study, the Aegean endemic genus <i>Microsciadium</i> was first evaluated in light of both ribosomal and chloroplast DNA datasets. According to the literature, <i>Microsciadium minutum</i> was determined as <i>Cuminum minutum</i>, then transferred to <i>Carum</i> (as <i>C. minutum</i>), and then <i>Azorella</i> (as <i>A. minuta</i>). Interestingly, these three genera belong to different tribes, even to different subfamilies. Since the phylogenetic position of <i>Microsciadium</i> was unknown, we analyzed this monotypic genus with a broad sampling of Apiaceae based on rps16 intron and an internal transcribed spacer. <i>Microsciadium</i> is well nested in the tribe Pyramidoptereae in Apioideae based on both datasets. Also, this genus is closely related to <i>Hellenocarum</i>. In addition, the detailed description, photographs, and micrographs of <i>M. minutum</i> are presented. The name is lectotypified here.
DOI: 10.6084/m9.figshare.20349134
title: Diversity and ecology of <i>Salvia officinalis</i> communities in the Western Balkans

description: Vegetation diversity and ecology of grassland communities with <i>Salvia officinalis</i> were assessed in the natural range of the species in the Western Balkans, using the Braun-Blanquet approach. With the aim of defining the differences among the communities and identifying the main environmental gradients, cluster analysis (Flexible Beta method) and non-metric multidimensional scaling ordination were applied. From a total of 346 phytosociological relevés (259 relevés were used from the literature, and 87 new relevés were collected recently in Montenegro and the Middle Dalmatian Islands of Croatia), seventeen associations were identified. Three associations (<i>Brachypodio retusi-Salvietum officinalis</i>, <i>Salvietum brachyodonti-officinalis</i> and <i>Salvio officinalis-Phlomidetum fruticosae</i>) and one subassociation (<i>Stipo</i>-<i>Salvietum officinalis campanuletosum lingulatae</i>) were described for the first time. Most of the associations belong to the alliances <i>Saturejion subspicatae</i> and <i>Chrysopogono grylli-Koelerion splendentis</i>, separated along an altitudinal and thermal gradient. They were classified in the order <i>Koelerietalia splendentis</i> and in the class <i>Helianthemo cani-Seslerietea nitidae</i>, whose presence in the western Balkans is a syntaxonomic novelty. Three associations belong to three other vegetation classes, <i>Festuco-Brometea erecti</i>, <i>Lygeo sparti-Stipetea tenacissimae</i> and <i>Ononido-Rosmarinetea</i>.
DOI: 10.6084/m9.figshare.20349134.v1
title: Diversity and ecology of <i>Salvia officinalis</i> communities in the Western Balkans

description: Vegetation diversity and ecology of grassland communities with <i>Salvia officinalis</i> were assessed in the natural range of the species in the Western Balkans, using the Braun-Blanquet approach. With the aim of defining the differences among the communities and identifying the main environmental gradients, cluster analysis (Flexible Beta method) and non-metric multidimensional scaling ordination were applied. From a total of 346 phytosociological relevés (259 relevés were used from the literature, and 87 new relevés were collected recently in Montenegro and the Middle Dalmatian Islands of Croatia), seventeen associations were identified. Three associations (<i>Brachypodio retusi-Salvietum officinalis</i>, <i>Salvietum brachyodonti-officinalis</i> and <i>Salvio officinalis-Phlomidetum fruticosae</i>) and one subassociation (<i>Stipo</i>-<i>Salvietum officinalis campanuletosum lingulatae</i>) were described for the first time. Most of the associations belong to the alliances <i>Saturejion subspicatae</i> and <i>Chrysopogono grylli-Koelerion splendentis</i>, separated along an altitudinal and thermal gradient. They were classified in the order <i>Koelerietalia splendentis</i> and in the class <i>Helianthemo cani-Seslerietea nitidae</i>, whose presence in the western Balkans is a syntaxonomic novelty. Three associations belong to three other vegetation classes, <i>Festuco-Brometea erecti</i>, <i>Lygeo sparti-Stipetea tenacissimae</i> and <i>Ononido-Rosmarinetea</i>.
DOI: 10.5281/zenodo.7628338
title: Underlying data for Evaluation of the antioxidant and anti-inflammatory effect of sublingual glutathione on COPD patients: an observational study

description: Underlying data for Evaluation of the antioxidant and anti-inflammatory effect of sublingual glutathione on COPD patients: an observational study
DOI: 10.5281/zenodo.7628337
title: Underlying data for Evaluation of the antioxidant and anti-inflammatory effect of sublingual glutathione on COPD patients: an observational study

description: Underlying data for Evaluation of the antioxidant and anti-inflammatory effect of sublingual glutathione on COPD patients: an observational study
DOI: 10.48428/adattar/3rfqrc
title: Mef2D

description: Data prepared during the Mef2D project.
DOI: 10.5281/zenodo.7620244
title: Nuclear Genome Organization in Fungi: From Gene folding to Rabl Chromosomes

description: We discuss the current knowledge on the fungal genome organization, from the association of chromosomes within the nucleus to topological structures at individual genes and the genetic factors required for the hierarchical organization. Chromosome conformation capture followed by high-throughput sequencing (Hi-C) has elucidated how fungal genomes are globally organized in Rabl configuration where centromere or telomere bundles are associated with opposite faces of the nuclear envelope. Here, we explore the presence, in fungal taxa, of the typical proteins associated with genome organization in eukaryotes.
DOI: 10.5281/zenodo.7620243
title: Nuclear Genome Organization in Fungi: From Gene folding to Rabl Chromosomes

description: We discuss the current knowledge on the fungal genome organization, from the association of chromosomes within the nucleus to topological structures at individual genes and the genetic factors required for the hierarchical organization. Chromosome conformation capture followed by high-throughput sequencing (Hi-C) has elucidated how fungal genomes are globally organized in Rabl configuration where centromere or telomere bundles are associated with opposite faces of the nuclear envelope. Here, we explore the presence, in fungal taxa, of the typical proteins associated with genome organization in eukaryotes.
DOI: 10.5281/zenodo.7628365
title: Dynamical simulation of EBSD master pattern of aluminium

description: Dynamical simulation of an electron backscatter diffraction (EBSD) master pattern of aliminium (<em>Fm\(\bar{3}\)m</em>, <em>a</em> = 4.04 Å). The master pattern was simulated with EMsoft v4.1. The HDF5 file includes master patterns of the upper and lower hemispheres, in both the stereographic projection and the square Lambert projection, of accelerating voltages from 10 to 20 kV with an increment of 1 kV. The HDF5 file can be opened with any HDF5 reader, e.g. the applications HDFView and HDFCompass or the Python library h5py. The file can also be read and plotted with the Python library kikuchipy (https://kikuchipy.org). Assuming Python and the library is installed, the stereographic projection of the master pattern with all energies can be read and plotted with the following commands: <pre><code class="language-python">import kikuchipy as kp s = kp.load("/path/to/am_mc_mp_20kv.h5") s.plot()</code></pre> The PNG file shows the stereographic projection of the upper hemisphere of the master pattern from 20 kV. The al.xtal file was produced with the EMsoft program EMmkxtal, contains a complete description of the crystal structure, and is used as input to the EMsoft programs EMMCOpenCL and EMEBSDmaster. The latter two programs produced the al_mc_mp_20kv.h5 file.
description: The master pattern was simulated while Håkon Wiik Ånes received financial support from the Norwegian University of Science and Technology (NTNU) through the NTNU Aluminium Product Innovation Centre (NAPIC).
DOI: 10.5281/zenodo.7628364
title: Dynamical simulation of EBSD master pattern of aluminium

description: Dynamical simulation of an electron backscatter diffraction (EBSD) master pattern of aliminium (<em>Fm\(\bar{3}\)m</em>, <em>a</em> = 4.04 Å). The master pattern was simulated with EMsoft v4.1. The HDF5 file includes master patterns of the upper and lower hemispheres, in both the stereographic projection and the square Lambert projection, of accelerating voltages from 10 to 20 kV with an increment of 1 kV. The HDF5 file can be opened with any HDF5 reader, e.g. the applications HDFView and HDFCompass or the Python library h5py. The file can also be read and plotted with the Python library kikuchipy (https://kikuchipy.org). Assuming Python and the library is installed, the stereographic projection of the master pattern with all energies can be read and plotted with the following commands: <pre><code class="language-python">import kikuchipy as kp s = kp.load("/path/to/am_mc_mp_20kv.h5") s.plot()</code></pre> The PNG file shows the stereographic projection of the upper hemisphere of the master pattern from 20 kV. The al.xtal file was produced with the EMsoft program EMmkxtal, contains a complete description of the crystal structure, and is used as input to the EMsoft programs EMMCOpenCL and EMEBSDmaster. The latter two programs produced the al_mc_mp_20kv.h5 file.
description: The master pattern was simulated while Håkon Wiik Ånes received financial support from the Norwegian University of Science and Technology (NTNU) through the NTNU Aluminium Product Innovation Centre (NAPIC).
DOI: 10.34740/kaggle/dsv/4975864
title: US Board on Geographic Names
DOI: 10.5281/zenodo.7562278
title: Data_ Integrating torrefaction of pulp industry sludge with anaerobic digestion to produce bioenergy and biochemicals: Techno-economic and environmental feasibility analysis

description: In order to improve the economic competitiveness of bioenergy carriers and biochemicals, they must be produced<br> from low-cost or no-cost feedstock and at a reduced operational expenses. In that regard, this study<br> focused on understanding the techno-economic feasibility of using pulp sludge as a low-cost alternative feedstock<br> to forestry biomass in torrefaction. Economic feasibility of further integrating pulp sludge torrefaction with<br> anaerobic digestion to produce energy, biomethane and volatile fatty acids (VFA) was also studied. The operational<br> expenses were around 8.2 and 2.04 M€ and the minimum selling price of torrefied pellets was 407 and<br> 189 €/t for forestry biomass torrefaction and pulp sludge torrefaction respectively. In case of integrated approaches,<br> VFA production showed higher economic feasibility with a torrefied pellets selling price of 163 €/t<br> compared with biomethane production (213 €/t). The biomethane and VFA selling price can be reduced by 90<br> and 64% compared with current market price at torrefied pellets selling price of 260 €/t. Sensitivity analysis<br> revealed that, moisture content of the sludge is the main influencing parameter on the overall economic feasibility<br> of the pulp sludge torrefaction. The environmental analysis showed that pulp sludge torrefaction has higher<br> emissions compared with forestry biomass torrefaction.
DOI: 10.5281/zenodo.7562277
title: Data_ Integrating torrefaction of pulp industry sludge with anaerobic digestion to produce bioenergy and biochemicals: Techno-economic and environmental feasibility analysis

description: In order to improve the economic competitiveness of bioenergy carriers and biochemicals, they must be produced<br> from low-cost or no-cost feedstock and at a reduced operational expenses. In that regard, this study<br> focused on understanding the techno-economic feasibility of using pulp sludge as a low-cost alternative feedstock<br> to forestry biomass in torrefaction. Economic feasibility of further integrating pulp sludge torrefaction with<br> anaerobic digestion to produce energy, biomethane and volatile fatty acids (VFA) was also studied. The operational<br> expenses were around 8.2 and 2.04 M€ and the minimum selling price of torrefied pellets was 407 and<br> 189 €/t for forestry biomass torrefaction and pulp sludge torrefaction respectively. In case of integrated approaches,<br> VFA production showed higher economic feasibility with a torrefied pellets selling price of 163 €/t<br> compared with biomethane production (213 €/t). The biomethane and VFA selling price can be reduced by 90<br> and 64% compared with current market price at torrefied pellets selling price of 260 €/t. Sensitivity analysis<br> revealed that, moisture content of the sludge is the main influencing parameter on the overall economic feasibility<br> of the pulp sludge torrefaction. The environmental analysis showed that pulp sludge torrefaction has higher<br> emissions compared with forestry biomass torrefaction.
DOI: 10.5281/zenodo.7627017
title: Damped Cantilever Microprobes for High-Speed Contact Metrology with 3D Surface Topography (Data)

description: Raw data and figures used for the article "Damped Cantilever Microprobes for High-Speed Contact Metrology with 3D Surface Topography", published in <em>Sensors</em> <strong>2023</strong>, <em>23</em>(4), 2003.
description: This research is funded by the EMPIR 17IND05 MicroProbes and 19ENG05 NanoWires projects. The projects 17IND05 MicroProbes and 19ENG05 NanoWires have received funding from the EMPIR program co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation program.
DOI: 10.5281/zenodo.7627016
title: Damped Cantilever Microprobes for High-Speed Contact Metrology with 3D Surface Topography (Data)

description: Raw data and figures used for the article "Damped Cantilever Microprobes for High-Speed Contact Metrology with 3D Surface Topography", published in <em>Sensors</em> <strong>2023</strong>, <em>23</em>(4), 2003.
description: This research is funded by the EMPIR 17IND05 MicroProbes and 19ENG05 NanoWires projects. The projects 17IND05 MicroProbes and 19ENG05 NanoWires have received funding from the EMPIR program co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation program.
DOI: 10.15151/esrf-es-1069558202
title: FInnish National Protein Crystallography Consortium

description: The Finnish BAG encompasses 24 groups active in crystallography in Finland. The projects vary widely and include membrane proteins and protein complexes, other proteins involved in disease and antibiotics and drug development and discovery (endoplasmic regulation and protein secretion, ADP-ribosylation and several oncogenic proteins including kinases, biocatalysis) and several pathogen proteins and various enzyme targets and e.g. studies on phytochrome photoreceptors and complexes involved in actin dynamics regulation. Overall the BAG serves the national needs for highly variable projects, with different biological and biotechnological applications. Several project will benefit from microfocus beam lines and tunable wavelength options for phasing, others benefit from quick robust screening by MASSIF. Biology lab is needed for SAXS experiments.