cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14459106.v1
title: Supplementary Material for: Diet of Grauer’s Gorillas (<b><i>Gorilla beringei graueri</i></b>) in a Low-Elevation Forest

description: Although the vast majority of critically endangered Grauer’s gorillas (<i>Gorilla beringei graueri</i>) inhabit low-elevation rain forests, current insights into this ape’s life history and ecology stem predominantly from 2 small populations ranging in highland habitats. Here, we provide an initial and non-exhaustive overview of food items of Grauer’s gorillas in the Nkuba Conservation Area (NCA), a lower-elevation (500–1,500 m) forest located between Kahuzi-Biega National Park and Maiko National Park in the Democratic Republic of the Congo. Community-based conservation efforts at the NCA aim to protect a population of unhabituated Grauer’s gorillas, which we have studied since 2014. Between 2014 and 2020, we simultaneously tracked 1–3 gorilla groups and recorded a total of 10,514 feeding signs on at least 100 plant species, ants, termites, and fungi. Vegetative plant parts (plant stems, leaves, pith, bark, and roots), especially of Marantaceae and Fabaceae, made up close to 90% of recorded feeding signs, with fruit accounting for most of the remainder and a small (&lt;1%) number of feeding signs on invertebrates and fungi. We found that the most frequently recorded food items were consumed year-round, though fruit intake seems to peak in the September-December wet season, possibly reflecting patterns in fruit phenology. The diet of Grauer’s gorillas in the NCA differed from that of Grauer’s gorillas in highland habitat and instead showed similarities with Grauer’s gorillas at the lowland forest of Itebero and with western lowland gorillas (<i>G. gorilla</i>), which live under ecologically comparable conditions.
DOI: 10.6084/m9.figshare.97699.v1
title: Mixed cloacogenic carcinoma of male urethra

description: Diagnostic features of poorly differentiated carcinoma with cloacogenic features of the male urethra.
DOI: 10.6084/m9.figshare.3527609.v1
title: Supplement 1. Information on studies used in the meta-analysis.

description: File List MorrisEtAl_supplement.csv Description MorrisEtAl_supplement.csv is a comma-delimited text file that shows all of the unique agent pairs (e.g., the "Different Agents" column of Appendix A) and provides additional detailed information on all of the studies used in the meta-analysis. The following table describes the variables in the file: -- TABLE: Please see in attached file. -- Here are several additional notes relating to data collection. Plant performance measures included measures of size and measures of sexual reproduction. Only four studies included both types of measure. In those cases, for mainly clonally reproducing plants, we chose the measure of size, and otherwise used the sexual reproduction measure. When multiple measures of the same type (either size or reproduction) were presented in a study, we chose the one that best represented plant performance (e.g., total biomass over belowground biomass). We recovered numerical data from graphics using the program ImageJ: Abramoff, M. D., P. J. Magelhaes, and S. J. Ram. 2004. Image Processing with ImageJ. Biophotonics International 11:36–42.
DOI: 10.6084/m9.figshare.21675137.v1
title: Stochastic processes structure both abundant and rare microbial communities involved in riverine nitrification and denitrification

description: Using high-throughput sequencing of archaeal <em>amoA</em>, bacterial <em>amoA</em>, <em>nirK</em>, and <em>nirS</em> genes, we investigated the biogeographic patterns and assembly mechanisms of nitrifying and denitrifying communities in the channel sediments, riparian rhizosphere soils, and riparian bulk soils of 30 rivers along the latitudinal gradient in China
DOI: 10.6084/m9.figshare.22573813.v2
title: Supplementary Material

description: Supplementary Material for the JDS paper of "Genomic-based genetic parameters for resilience across lactations in North American Holstein cattle based on variability in daily milk yield records".
DOI: 10.6084/m9.figshare.14327102.v1
title: Climatic drivers of Sphagnum species distributions environmental layers, presences and output rasters

description: Output rasters, presences and climate rasters at all resolutions from Climatic drivers of <i>Sphagnum </i>species distributions
DOI: 10.6084/m9.figshare.23726126.v1
title: Supp_information.7z from Dynamic evolution of size and colour in the highly specialized Zodarion ant-eating spiders

description: Ecological specialists constitute relevant case studies for understanding the mechanisms, potential and limitations of evolution. The species-rich and strictly myrmecophagous spiders of the genus <i>Zodarion</i> show diversified defence mechanisms, including myrmecomorphy of different ant species and nocturnality. Using Hybridization Capture Using RAD Probes (hyRAD), a phylogenomic technique designed for sequencing poorly preserved specimens, we reconstructed a phylogeny of <i>Zodarion</i> using 52 (approx. a third of the nominal) species that cover its phylogenetic and distributional diversity. We then estimated the evolution of body size and colour, traits that have diversified noticeably and are linked to defence mechanisms, across the group. Our genomic matrix of 300 loci led to a well-supported phylogenetic hypothesis that uncovered two main clades inside <i>Zodarion</i>. Ancestral state estimation revealed the highly dynamic evolution of body size and colour across the group, with multiple transitions and convergences in both traits, which we propose is likely indicative of multiple transitions in ant specialization across the genus. Our study will allow the informed targeted selection of <i>Zodarion</i> taxa of special interest for research into the group's remarkable adaptations to ant specialization. It also exemplifies the utility of hyRAD for phylogenetic studies using museum material.
DOI: 10.6084/m9.figshare.28190957.v1
title: submesoscale modelling figures data at Changjiang River

description: This item shows submesoscale modelling figures data used at manuscript '<b>Tidal Modulation of Submesoscale Dynamics in the Yangtze River Estuary</b>'.The model domain spans the entire Yangtze River estuary (29.5°N-32°N, 120°E-124°E), with a horizontal resolution of approximately 1 km and 50 vertical coordinate levels. The simulation incorporates 16 tidal constituents and uses 6-hourly climatological atmospheric forcing from the European Centre for Medium-Range Weather Forecasts (ECMWF) operational model analysis as surface boundary conditions.The model is two-way nested from the climatological simulation of China's marginal seas described by Sun et al. (2019), which has been well-validated against various observational datasets. The monthly climatological mean discharges of the Yangtze River and Qiantang River are incorporated into the model. Following a 20-year spin-up, the model reached a state of equilibrium. To assess the effects of tidal forcing on submesoscale dynamics, we conducted two sets of simulations: one with tidal forcing and one without. The tidal and non-tidal analyses utilize hourly and daily outputs over the month of August, respectively.
DOI: 10.6084/m9.figshare.1407004.v5
title: Datasets

description: Contains all the datasets available in the TISSUES database with all the data, including the non-confident gene-tissue associations. The non-confident associations are not available at the TISSUES database but were used them in the fold enrichment analyses. The files format is: Taxon_id ENSP tissues_code BTO source evidences confidence_score(stars) linkout
DOI: 10.6084/m9.figshare.14443727.v3
title: Piquetetal._2021_LampENDSQAB

description: Dataset including the raw data for the calculation of endemic herpetofauna abundance in Gran Canaria in the invaded area of <i>Lampropeltis californiae </i>and the uninvaded area. The dataset includes three tabs, one for each sampling method.<br>
DOI: 10.6084/m9.figshare.7477781.v1
title: Supplementary Material for: Characterization and Beige Adipogenic Potential of Human Embryo White Adipose Tissue-Derived Stem Cells

description: <b><i>Background/Aims:</i></b> Brown and beige adipocytes are widely recognized as potential therapeutic targets to treat obesity and related metabolic disorders, and the recruitment of brown and beige adipocytes is an essential aspect that requires attention. Although many methods of activating brown adipocytes or generating beige adipocytes have been reported, the limited number and sources are the biggest challenges. The number of white adipocytes is much greater than the number of brown adipocytes, both in human adults and fetuses. Unfortunately, human adult white adipose tissue-derived stem cell (aWAsc) has little beige adipogenic potential. However, the characteristics and beige adipogenic potential of human embryo-derived white adipose stem cells (eWAsc) still need to be investigated. <b><i>Methods:</i></b> To analyze the characteristics and functionality of eWAsc, we analyzed the markers of adipose precursor cells by flow cytometry. Then, differentiation and browning/beiging were induced, and the identifying markers were analyzed by real-time PCR and immunoblot. In addition, more in-depth exploration was performed using RNA-SEQ on eWAsc and aWAsc. <b><i>Results:</i></b> eWAsc was isolated from human embryonic white adipose tissue, and aWAsc was isolated from adult white adipose tissue by collagenase treatment. eWAsc has extreme advantages in adipogenesis capacity and browning/beiging ability in comparison to aWAsc, indicating that eWAsc may possess some special regulatory factors to promote the generation of functional brown/beige adipocytes. Greater exploration was enabled by RNA-SEQ, revealing a large number of differences at the transcriptional levels, including 1263 differentially expressed genes, 657 down- and 605 upregulated, in eWAsc compared to aWAsc. Pathway analysis revealed enrichment in cell cycle, TGF-β signaling pathway, DNA replication, and Hippo signaling pathways. Interestingly, the expression levels of C/EBPα, FGF1 and FST gene, which are related to the maturation of adipocytes, Hippo signaling pathway and TGF-β signaling pathway, were significantly higher in eWAsc than in aWAsc. These may be potential candidates and possible regulatory targets for recruiting beige adipocytes in human adipose tissue. <b><i>Conclusion:</i></b> Overall, we have demonstrated the molecular characteristics and excellent beige adipogenic potential of eWAsc, providing a new reference for studying human adipocytes.
DOI: 10.6084/m9.figshare.1066144.v1
title: THE USE OF STUDY SKILLS IN PROMOTING ACADEMIC ACHIEVEMENT OF STUDENTS

description: -In this changing Global Scenario if students want to encounter the Academic Challenges they<br>need to acquire Aptitude (Skills) to study. In India, the society has turned into marks oriented which<br>unfortunately creates pressure, leading to stress thereby affects the Mental Health of students. Since<br>their Academic Achievement is measured on the basis of their marks, they need to manage their stress<br>with Study skills playing the major role and hence this paper
DOI: 10.6084/m9.figshare.23254343.v2
title: <strong>Contrasting exogenous and endogenous soil microbial carbon use efficiencies under global changes</strong>

description:   
Microbial carbon use efficiency (CUE) is a critical parameter for controlling soil carbon dynamic. It is divided into microbial exogenous CUE (CUEex) and microbial endogenous CUE (CUEen) based on microbial utilization of carbon derived from organic material and soil organic matter. Global changes encompassing warming, dramatically decreased precipitation (drought) events, anthropogenic nutrient addition, and plant invasion can strongly influence microbial CUEex and CUEen. However, the responses of microbial CUE to global changes remain unclear, which can lead to significant uncertainties when forecasting terrestrial ecosystem carbon cycling under global changes. To address this issue, we analyzed 196 paired microbial CUEex and 97 paired microbial CUEen data and found that microbial CUEex decreased significantly with absolute latitude, while microbial CUEen showed the opposite trend. Warming had significant negative impacts on microbial CUEex and CUEen with decreases of 16.0% and 28.3%, respectively. Decreased precipitation had a mixed effect; increasing microbial CUEex by 7.9% but decreasing microbial CUEen by 14.4%. Nutrient addition had a consistently negative impact on microbial CUEex, decreasing it by 3.9-14.8%. The application of nitrogen, and nitrogen combined with phosphorus and potassium significantly increased microbial CUEen by 32.8% and 43.1%, respectively. Invasive plants significantly decreased microbial CUEex by 11.5%. Global change enhanced the microbial growth rate by 6.5%; however, when combined with added exogenous carbon there was a decrease of 3.2%. Aridity index, soil pH, and soil cation exchange capacity were the primary determinants of microbial CUEex in response to global changes. In contrast, microbial respiration and growth rates, followed by microbial biomass carbon, were found to be the most influential predictors of microbial CUEen. Therefore, it is essential to differentiate the magnitude, direction, and driving factors of microbial CUEex and CUEen in biogeochemical models, to accurately predict terrestrial ecosystem carbon cycling and potential feedbacks to global changes.
DOI: 10.6084/m9.figshare.21085234.v2
title: A global paleogeographic reconstruction for the early Miocene (~20 Ma)

description: Early Miocene paleogeography
DOI: 10.6084/m9.figshare.26361991.v1
title: Appendix 1 from Reliable biogeography requires fossils: insights from a new species-level phylogeny of extinct and living carnivores

description: Produced phylogeny
DOI: 10.6084/m9.figshare.21732719.v1
title: Rhythmic gymnastics traditional warm-up (control group)

description: The rhythmic gymnastics traditional warm-up that the control group performed while the experimental group underwent the core and plyometric functional training. Time from 40 to 45 min.
DOI: 10.6084/m9.figshare.12333290.v2
title: A relational database of Roman law based on Justinian’s Digest

description: The Digest is the definitive Roman law compendium compiled under the Byzantine emperor Justinian I (533 CE). This relational database includes the text of Theodor Mommsen’s authoritative edition of the Digest with accompanying information about its compositional structure and its featured jurists. The data was collected from raw text files and transformed to a structured machine-readable form in a Python coding environment. Pre-processed data stored in flat files were loaded to a single super lightweight SQLite database (&lt;7Mb) which chains six tables to each other in many-to-one relationships. The database can be easily browsed, queries and expanded in a variety of free-to-use interfaces. Apart from reliable, efficient and structured information retrieval, the database assists large scale quantitative analysis and it can be used as the starting point for further computer-assisted Roman law projects.<br><br>** Consult the README.md file on the project's GitLab page to enable interactive features. See reference link below. **
DOI: 10.6084/m9.figshare.17429315.v1
title: Supplementary Material for: Cancer Predisposition Genetic Analysis in Children with Brain Tumors Treated at a Single Institution in Japan

description: Brain tumors affect one-third of all children with cancer. Approximately 10% of children with cancer carry variants in cancer predisposition genes. However, germline analyses in large cohorts of Asian children have not been reported. Thirty-eight Japanese patients with pediatric brain tumors were included in this study (19 boys, 19 girls). DNA was extracted from the patients’ peripheral blood, and cancer-associated genes were analyzed using targeted resequencing. Rare variants with allele frequencies &lt;0.1% in the general population and variants suspected to be pathogenic were extracted and analyzed. Pathogenic variants were found in 7 patients (18%): 2 nonsense variants of CHEK2 and FANCI; 2 frameshift deletions in SMARCB1 and PTCH1; and 3 missense variants of TSC1, WRN, and MLH1. The median age at diagnosis was 9.1 years, and three of the 7 patients had a family history of cancer. One patient diagnosed with basal cell nevus syndrome, also called Gorlin syndrome, developed a second neoplasm, and another with an SMARCB1 variant and an atypical teratoid/rhabdoid tumor developed a thyroid adenomatous nodule. This is the first cancer-related germline analysis with detailed clinical information reported in Japanese children with brain tumors. The prevalence was almost equivalent to that in white children.
DOI: 10.6084/m9.figshare.26918194.v1
title: 2021 Macrogenomes of algal bloom sediments in the Erhai , Yunnan Province, China

description: 2021 Macrogenomes of algal bloom sediments from the Erhai Sea, Yunnan Province, China. Contains sediment samples before and after the 2021 and 2022 blooms.
DOI: 10.6084/m9.figshare.27308562.v3
title: 1.xlsx

description: casqwertyio
DOI: 10.6084/m9.figshare.12217682.v4
title: Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere: QIIME input files

description: QIIME2 combined files for the 35 16S rRNA gene amplicon sequencing datasets included in "Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere", published in The ISME Journal (https://www.nature.com/articles/s41396-020-00814-9). These can be used to either re-run the analyses performed or to add additional studies to. Full details on the use of these files and what they contain is at: https://github.com/R-Wright-1/Plastisphere-MetaAnalysis<br>Note that these only include the output from Deblur and not the initial reads files for each study. These can be found at 'Raw reads' (another supplementary file within this project).
DOI: 10.6084/m9.figshare.12821153.v2
title: The unprecedented outbreak of dengue in Singapore, a dataset of spatiotemporal dengue cases covering the nationwide lockdown period in 2020

description: Dengue, a mosquito-transmitted viral disease, has posed a public health challenge to Singapore residents over the years. In 2020, Singapore has been experiencing an unprecedented dengue outbreak. As of 7 Sep, the cumulative number of dengue cases for this year stands at more than 28300. We collect a dataset of weekly dengue cases with the locality of each case. Specifically, our dataset captures all dengue cases that are reported from 15 Feb to 9 July in 2020, which covers the nationwide lockdown period from 7 April to 1 June for controlling the pandemics of COVID-19. The locality is matched to spatial units with a high resolution, with an average coverage of only about 1.35 km<sup>2</sup>. The dengue case dataset with such a fine-grained resolution could provide materials for either revealing dengue transmission pattern, or researching on the effects of lockdown on dengue spreading dynamics. The resulting weekly dengue case records with geographical locality are released in simple formats for easy access to facilitate studies on dengue epidemics. <br>
DOI: 10.6084/m9.figshare.20766577.v1
title: ICSE-23-Replication.7z

description: This file contains the obtained code and results in the experiments of ICSE-23 submission: Stealthy Backdoor Attack for Code Models
DOI: 10.6084/m9.figshare.4225334.v1
title: Data files for article: Caribbean Spiny Lobster Fishery is Underpinned by Trophic Subsidies from Chemosynthetic Primary Production

description: These data accompany the publication:Higgs ND, Newton J and Attrill MJ (2016) Caribbean Spiny Lobster Fishery is Underpinned by Trophic Subsidies from Chemosynthetic Primary Production. Current Biology, <br>These data allow the replication of analyses reported in the publication and are provided in tabulated form as individual .csv files for interrogation and as a folder of data files and script formatted for use in the SIMMR package in the R software environment.<br>Sampling Date (ISO standard): 2014-08Sampling Location (Marine Regions): Great Bahama Bank<br>File “Lobster_isotope_values.csv” contains bulk stable isotope values of Nitrogen, Carbon and Sulphur for muscle tissue samples taken from individual lobsters (Panulirus argus) collected in a numbered sampling location.<br>File “Prey_group_isotope_values” contains mean and standard deviations of the bulk stable isotope values of Nitrogen, Carbon and Sulphur for groups of samples of lobster prey species. The mean concentration of each element in the samples is also included for each group. This data is reported in Table S2 in the publication. Group names and full details of species included in each group are detailed in the publication.<br>File “Trophic_enrichment_factors” contain values of corrections applied to prey isotope values in the stable isotope mixing model, to account for isotopic enrichment when prey are assimilated into the lobster tissue.<br>The zip file “R Data Files” contains a folder with an R Script file and associated data files for running the stable isotope mixing model (SIMMR) as described in the publication<br><br><br>
DOI: 10.6084/m9.figshare.14604546.v1
title: Thinning response of oak-hornbeam forests near Vienna, Austria

description: Data used in publication entitled "Thinning Response and Potential Basal Area—A Case Study in a Mixed Sub-Humid Low-Elevation Oak-Hornbeam Forest" published in "Forests". <br>Description of content:"stand" indicate three plots, UT unthinned, MT moderatly thinned, HT heavy thinned"id" is the tree identifier<br>"species" is the tree species, 21 and 46 Fagus sylvatica, 22 Carpinus betulus, 23 and 44 Quercus petraea, 42 Quercus cerris, 47 Sorbus torminalis, 55 Pyrus pyraster"dbh09" diameter at breast height (DBH) measured in 2009 (unit millimeter)"dbh14" DBH measured in 2014"dbh19" DBH measured in 2019"ht09" tree height (HT) measured in 2009 (unit meter)"ht14" HT measured in 2014"ht19" HT measured in 2019
DOI: 10.6084/m9.figshare.25956190.v1
title: Supplementary Material for: Prevalence and Rapid Screen Method of Diagnostic Criteria for Psychosomatic Research Syndromes in Human Papillomavirus-Infected Patients

description: Introduction: The early and rapid identification of psychosomatic symptoms is crucial to prevent harmful outcomes in patients with human papillomavirus (HPV) infection in busy comprehensive clinics. Objective: This study aimed to explore the prevalence and rapid screening method of the Diagnostic Criteria for Psychosomatic Research-Revised (DCPR) syndromes in patients with HPV infection.
Methods: A total of 504 participants underwent a clinical assessment, that included DCPR, Diagnostic and Statistical Manual of Mental (DSM)-5, the Social Support Rating scale (SSRS), the Simplified Coping Style Questionnaire (SCSQ), fear of disease, sociodemographic, and clinical characteristics. We compared the prevalence of DCPR syndromes and DSM-5 diagnoses between the HPV-positive and negative patients using Kruskal‒Wallis tests. We explored the rapid screen indicator through multiple logistic regression analyses of the participants’ psychosocial fators, sociodemographic and clinical characteristics.
Results: The incidence of DCPR syndromes in HPV-positive patients (56.6%) was significantly greater than that in HPV-negative patients (17.3%) and DSM-5 diagnoses (8.5%) in the HPV positive group. As the degree of fear increased from 0 to 5 to 10, the risk of DCPR increased from 1.27 (95% CI: 0.21-7.63) to 3.24 (score range: 1–5, 95% CI: 1.01–10.39) to 9.91 (score range: 6–10, 95% CI: 3.21–30.62) in the HPV-positive group.
Conclusions: Health anxiety, irritable mood, type A behavior and demoralization were the most common psychosomatic syndromes in HPV-positive patients. The degree of fear, as an independent risk factor, could be used to quickly screen outpatients with a high risk of DCPR syndrome among women with HPV infection.