cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7272/q6qn64x5
title: Group antenatal and postnatal care in Rwanda: model fidelity monitoring data

description: For a cluster randomized controlled trial of the effect of group
 antenatal care on perinatal outcomes in Rwanda, a Technical Working Group
 customized the group care model for implementation in this context. Group
 antenatal and postnatal care were implemented in 18 Rwandan health centers
 during the study period June 1, 2017 to January 31, 2019. We used two
 discreet questionnaires to collect data from two groups about the fidelity
 with which the group antenatal care model was implemented during this
 period. Group care facilitators, including nurses, midwives, and community
 health workers, recorded descriptive data about each visit and
 self-assessed process fidelity with a series of yes/no checkboxes. Master
 Trainers assessed process fidelity with an 11-item tool using a 5-point
 scale of 0 (worst) to 4 (best). 140 Model Fidelity Assessment
 questionnaires were completed by Master Trainers during supervision
 visits. 2763 Group Visit Debrief questionnaires were completed by the
 nurses, midwives, and community health workers who facilitated each group
 visit. 
description: Two questionnaires, the Model Fidelity Assessment and the Group
 Visit Debrief questionnaires, were completed by participants either on
 paper or on a mobile device (tablet) on immediately after the group
 antenatal or postnatal care visit. Data abstracted from paper
 questionnaires or entered directly into the tablet were stored in REDCap,
 an electronic data capture platform that was hosted at the University of
 California, San Francisco. Data were then downloaded from REDCap and
 cleaned. Empty data set rows were deleted. Free text answers in
 Kinyarwanda, the local language, have not been translated. 
description: Some data are missing. Missing data represent answers that were
 not provided by participants at the time the questionnaire was completed
 or at the time a study staff member abstracted paper questionnaire data to
 the electronic data capture platform.
DOI: 10.5061/dryad.vhhmgqnpv
title: Anxiety, self-efficacy, and self-regulation in high school students The mediating role of attentional control

description: Reducing anxiety, developing self-efficacy and self-regulation skills, and
 increasing attentional control are among the goals of psychological
 counseling sessions. This study intends to determine whether or not high
 school students’ attentional control over their anxieties is affected by
 self-efficacy and self-regulation, as attentional control is not seen to
 have been studied relationally with other variables in Turkey; 334
 students in Istanbul’s Zeytinburnu district participated in the research.
 Data has been collected using the General Self-Efficacy Scale, the
 Perceived Self-Regulation Scale, the State-Trait Anxiety Inventory, and
 the Attentional Control Scale. Correlation and path-analysis techniques
 have been used in analyzing the data. According to the findings,
 self-efficacy is a positive and significant predictor of self-regulation
 and attentional control and a negative predictor of anxiety in model for
 the high school students. Attentional control also negatively predicts
 anxiety. Additionally, attentional control has a mediating role between
 self-efficacy and anxiety.
DOI: 10.5061/dryad.00000000g
title: Severe inbreeding depression is predicted by the “rare allele load” in Mimulus guttatus

description: Most flowering plants are hermaphroditic and experience strong pressures
 to evolve self‐pollination (automatic selection, reproductive assurance).
 Inbreeding depression (ID) can oppose selection for selfing, but it
 remains unclear if ID is typically strong enough to maintain outcrossing.
 To measure the full cost of sustained inbreeding on fitness, and its
 genomic basis, we planted highly homozygous, fully genome‐sequenced inbred
 lines of yellow monkeyflower (Mimulus guttatus) in the field next
 to outbred plants from crosses between the same lines. The cost of full
 homozygosity is severe: 65% for survival, 86% for lifetime seed
 production. Accounting for the unmeasured effect of lethal and sterile
 mutations, we estimate that the average fitness of fully inbred genotypes
 is only 3–4% that of outbred competitors. The genome sequence data
 provides no indication of simple overdominance, but the number of rare
 alleles carried by a line, especially within rare allele clusters
 nonrandomly distributed across the genome, is a significant negative
 predictor of fitness measurements. These findings are consistent with a
 deleterious allele model for ID. High variance in rare allele load among
 lines and the genomic distribution of rare alleles both suggest that
 migration might be an important source of deleterious alleles to local
 populations.
description: Field fitness and greenhouse data include either counts of seeds
 or dry tissue weights.
DOI: 10.5061/dryad.tqjq2bvtv
title: Wild Dictyostelium discoideum social amoebae show plastic responses to the presence of nonrelatives during multicellular development

description: When multiple strains of microbes form social groups, such as the
 multicellular fruiting bodies of Dictyostelium discoideum, conflict can
 arise regarding cell fate. Both fixed and plastic differences among
 strains can contribute to cell fate, and plastic responses may be
 particularly important if social environments frequently change. We used
 RNA-sequencing and photographic time series analysis to detect possible
 conflict-induced plastic differences between wild D. discoideum aggregates
 formed by single strains compared to mixed pairs of strains (chimeras). We
 found one hundred and two differentially expressed genes that were
 enriched for biological processes including cytoskeleton organization and
 cyclic-AMP response (up-regulated in chimeras), and DNA replication and
 cell cycle (down-regulated in chimeras). In addition, our data indicate
 that in reference to a time series of multicellular development in the lab
 strain AX4, chimeras may be slightly behind clonal aggregates in their
 development. Finally, phenotypic analysis supported slower splitting of
 aggregates and a nonsignificant trend for larger group sizes in chimeras.
 The transcriptomic comparison and phenotypic analyses support
 discoordination among aggregate group members due to social conflict.
 These results are consistent with previously observed factors that affect
 cell fate decision in D. discoideum and provide evidence for plasticity in
 cAMP signaling and phenotypic coordination during development in response
 to social conflict in D. discoideum and similar microbial social groups.
DOI: 10.5061/dryad.d2547d7zr
title: Differences in vegetative growth of two invasive hawkweeds at temperatures simulating invaded habitats at two altitudes

description: Hieracium pilosella and H. aurantiacum are invading alpine regions in New
 South Wales, Australia. In a glasshouse experiment we investigated
 germination and growth rates of these two species at temperatures
 simulating the altitudes where invasions are occurring from autumn to
 spring. We measured germination rates, growth rates and the development of
 stolons and ramets using seedlings and plantlets from established plants.
 Germination was low in H. aurantiacum and unaffected by altitude or seed
 age. H. pilosella showed site to site variability in germination but had
 greater germination. No species produced flower spikes. Both species grew
 rapidly and put at least twice as much biomass into roots compared to
 shoots. H. aurantiacum could begin to produce stolons after 27 days and
 seedlings grew a little larger than for H. pilosella. Hieracium
 aurantiacum put significantly more resources into ramets, allocating
 between 4-15% of biomass. H. pilosella produced 2.6 stolons month-1, in
 contrast to 9.8 stolons month-1 for H. aurantiacum. Furthermore, plantlets
 from established plants had vastly different growth rates.
  Plantlets of H. aurantiacum produced 2.1 leaves day-1 from late
 summer to winter where H. pilosella was 3 times slower for the same period
 but faster following winter. Both species were able to maintain strong
 growth over cooler months suggesting hawkweeds have the capacity for fast
 growth in the invaded range under high nutrients and lower competition. H.
 aurantiacum is likely to be a more effective invader than H. pilosella
 spreading through stolons and the development of weed mats.
description: Data was from laboratory trials using seeds collected from a
 range of sites and plants from pots grown in glasshouse conditions. Two
 species were investigated: <em>Hieracium
 aurantiacum</em> (orange hawkweed, OHW) and
 <em>Hieracium</em> <em>pilosella </em>(mouse ear
 hawkweed, MEHW) Three kinds of data are
 presented: 1.  Germination data based on 25 seeds
 placed into petridishes and followed through time.  Petri dishes were
 either placed in cabinets at ambient temperature, temperatures simulating
 1000m or 1700m asl.  Germination was followed through time.  Old seeds
 collected from sites in previous years are contrasted with new seeds
 collected in the season prior to experimentation. 2. We
 followed growth through time for 20 germinants grown at either 1000m or
 1700m.  Dry biomass of above ground and below ground parts are
 presented. 3. Using ramets from plants grown in pots
 and kept in the glasshouse for some years, growth rates (no. leaves
 through time) are measured at temperatures representative of the altitude
 where populations have invaded in the field (wither 1700m or 1000m). Only
 a subset of plants were grown through the latter part of the experiment
 after repotting.
DOI: 10.5061/dryad.41ns1rn9q
title: Fusarium virguliforme transcriptional plasticity is revealed by host colonization of corn vs. soybean

description: We exploited the broad host range of Fusarium virguliforme to identify
 differential fungal responses leading to either an endophytic or a
 pathogenic lifestyle during colonization of corn (Zea mays) and soybean
 (Glycine max), respectively. To provide a foundation to survey the
 transcriptomic landscape, we produced an improved de novo genome assembly
 and annotation of F. virguliforme using PacBio sequencing. Next, we
 conducted a high-resolution time course of F. virguliforme colonization
 and infection of both soybean, a symptomatic host, and corn, an
 asymptomatic host. Comparative transcriptomic analyses uncovered a nearly
 complete network rewiring, with less than 8% average gene coexpression
 module overlap upon colonizing the different plant hosts. Divergence of
 transcriptomes originating from host specific temporal induction genes is
 central to infection and colonization, including carbohydrate-active
 enzymes (CAZymes) and necrosis inducing effectors. Upregulation of
 Zn(II)-Cys6 transcription factors were uniquely induced in soybean at 2
 days post-inoculation, suggestive of enhanced pathogen virulence on
 soybean. In total, the data described herein suggest that F. virguliforme
 modulates divergent infection profiles through transcriptional plasticity.
DOI: 10.5061/dryad.v41ns1rrt
title: Repeated parallel losses of inflexed stamens in Moraceae: phylogenomics and generic revision of the tribe Moreae and the reinstatement of the tribe Olmedieae (Moraceae)

description: We present a densely-sampled phylogenomic study of the
 mulberry tribe (Moreae, Moraceae), an economically important clade with a
 global distribution, revealing multiple losses of inflexed stamens, a
 character traditionally used to circumscribe Moreae. Inflexed stamens
 facilitate ballistic pollen release and are associated with wind
 pollination, and the results presented here suggest that losses
 of this character state may have evolved repeatedly in Moraceae. Neither
 Moreae nor several of its major genera
 (Morus, Streblus, Trophis) were found to
 be monophyletic. A revised system for a monophyletic Moreae is
 presented, including the reinstatement of the genera Ampalis,
 Maillardia, Taxotrophis, and Paratrophis, and the
 recognition of the new
 genus Afromorus. Pseudostreblus is reinstated
 and transferred to the Parartocarpeae,
 and Sloetiopsis is reinstated and transferred to the
 Dorstenieae. The tribe Olmediae is reinstated, replacing the Castilleae,
 owing to the reinstatement of the type
 genus Olmedia, and its exclusion from
 Moreae. Streblus s.s. is excluded from Moreae and
 transferred to the Olmediae, which is characterized primarily by
 involucrate inflorescences without regard to stamen position. Eight new
 combinations are made.
description: Phylogenetic data set based on HybSeq / target enrichment using
 the Moraceae333 and Angiosperms353 loci. 
description: Please see the information contained in README.txt
DOI: 10.5061/dryad.rxwdbrv4c
title: Small temperature variations are a key regulator of reproductive growth and assimilate storage in oil palm (Elaeis guineensis)

description: Oil palm is an important crop for global vegetable oil production, and is
 widely grown in the humid tropical regions of Southeast Asia. Projected
 future climate change may well threaten palm oil production. However, oil
 palm plantations currently produce large amounts of unutilised biological
 waste. Oil palm stems – which comprise two-thirds of the waste - are
 especially relevant because they can contain high levels of non-structural
 carbohydrates (NSC) that can serve as feedstock for biorefineries. NSC in
 the stem are also considered a potent buffer to source-sink imbalances. In
 the present study, we monitored stem NSC levels and female reproductive
 growth. We then applied convergent cross mapping (CCM) to assess the
 causal relationship between the time-series. Mutual
 causal relationships between female reproductive growth and stem NSC were
 detected, with the exception of a relationship between female reproductive
 organ growth and starch levels. NSC levels were also influence by
 long-term cumulative temperature, with the relationship showing a
 seven-month time lag. The dynamic between NSC levels and long-term
 cumulative rainfall showed a shorter time lag. The lower temperatures and
 higher cumulative rainfall observed from October to December identify this
 as a period with maximum stem NSC stocks.
description: Time series data of female reproductive growth, non-structural
 carbohydrates (soluble sugar and starch) in oil palm stem, cumulative
 temperature and cumulative rainfall were collected between October 23rd
 2012 and March 31st 2016. Causal relationships between the time series
 data were analyzed by emperical dynamic modeling.
description: Eight studied oil palm trees were grouped into two artificial
 treatments, namely, four trees under non-artificial treatment (NAT) and
 the other four trees under pruned fruits treatments (PFT). The average of
 soluble sugar content collected from three point of single oil palm stem
 (upper, middle and lower points in height) was scored with column names,
 like, NAT_sugar1 to NAT_sugar4 (1st to 4th trees in NAT) and PFT_sugar1 to
 PFT_sugar4 (1st to 4th trees in PFT). The average of starch content
 collected from three point of single oil palm stem (upper, middle and
 lower points in height) was also scored with column names, like,
 NAT_starch1 to NAT_starch4 (1st to 4th trees in NAT) and PFT_starch1 to
 PFT_starch4 (1st to 4th trees in PFT). On reproductive growth, due to
 fruits pruning on PFT trees, no time-series data are existed on PFT
 trees.The column names, NAT_FROV1~4, are volumes of female reproductive
 organs of 1st to 4th trees of NAT. The column names, NAT_FROG1~4, are
 growth of female reproductive organs from previous measurement (1 month
 before) of 1st to 4th trees of NAT. The cumulative rainfall and
 temperature from 1 to 60 days are recorded as rain1~60 and temp1~60,
 respectively.
DOI: 10.5061/dryad.b8gtht785
title: Small shelly fossils and carbon isotopes from the early Cambrian (Stage 3-4) Mural Formation of western Laurentia

description: The extraordinary window of phosphatised and phosphatic Small Shelly
 Fossils (SSFs) during the early and middle Cambrian is an important
 testament to the radiation of biomineralising metazoans. While SSF are
 well known from most Cambrian palaeocontinents during this time interval,
 western Laurentia has relatively few SSF faunas. Here we describe a
 diverse SSF fauna from the early Cambrian (Stage 3-4) Mural Formation at
 three localities in Alberta and British Columbia, Canada, complemented by
 carbon isotope measurements at two of the recorded sites to aid in a
 potential future bio-chemostratigraphic framework.. The fauna expands the
 recorded SSF assemblage diversity in western Laurentia and includes
 several brachiopods, four bradoriids, three chancelloriids, two hyoliths,
 a tommotiid and a helcionellid mollusc as well as echinoderm ossicles and
 specimens of Microdictyon, Volborthella and Hyolithellus. New taxa include
 the tommotiid genus Canadiella gen. nov., the new bradoriid species
 Hipponicharion perforata sp. nov. and Pseudobeyrichona taurata sp. nov.
 Compared to contemporaneous faunas from western Laurentia, the fauna is
 rich, particularly in taxa with originally phosphatic shells, which appear
 to be associated with archaeocyathid buildups. This suggests that the
 generally low faunal diversity in western Laurentia may be at least partly
 a consequence of poor sampling of suitable archaeocyathan reef
 environments. In addition, the tommotiid Canadiella filigrana appears to
 be of biostratigraphic significance in Cambrian Stage 3 strata of western
 Laurentia and the unexpected high diversity of bradoriid arthropods in the
 fauna also suggests that this group may prove useful for biostratigraphic
 resolution in the region.
description: Collection and processing information is presented in the
 paper.
DOI: 10.5061/dryad.qnk98sfbv
title: Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs

description: In the open ocean without terrain boundaries, marine invertebrates with
 pelagic larvae can migrate long distances using ocean currents, suggesting
 reduced genetic diversification. Contrary to this assumption, however,
 genetic differentiation is often observed in marine invertebrates. In the
 present study, we sought to explain how population structure is
 established in the western Pacific Ocean, where the strong Kuroshio
 Current maintains high levels of gene flow from south to north, presumably
 promoting genetic homogeneity. We determined the population structure of
 the pearl oyster, Pinctada fucata, in the Indo-Pacific Ocean using
 genome-wide genotyping data from multiple sampling localities. Cluster
 analysis showed that the western Pacific population is distinct from that
 of the Indian Ocean, and that it is divided into northern (Japanese
 mainland) and southern (Nansei Islands, China, and Cambodia) populations.
 Genetic differentiation of P. fucata can be explained by geographic
 barriers in the Indian Ocean and a local lagoon, and by environmental
 gradients of sea surface temperature (SST) and oxygen concentration in the
 western Pacific. A genome scan showed evidence of adaptive evolution in
 genomic loci, possibly associated with changes in environmental factors,
 including SST and oxygen concentration. Furthermore, Bayesian simulation
 demonstrated that the past population expansion and division are congruent
 with ocean warming after the last glacial period. It is highly likely that
 the environmental gradient forms a genetic barrier that diversifies P.
 fucata populations in the western Pacific. This hypothesis helps to
 explain genetic differentiation and possible speciation of marine
 invertebrates.
DOI: 10.5061/dryad.3bk3j9kf1
title: Data from: Three-dimensional soft tissue preservation revealed in the skin of a non-avian dinosaur

description: The most commonly preserved soft tissues associated with ornithischian
 dinosaurs are skin remains. The apparent resistance of hadrosaur skin to
 decay, and its abundance in the fossil record relative to that of other
 tetrapods, has been attributed to factors such as thickness and
 composition. Here we report additional intrinsic factors within hadrosaur
 skin: 3D‐preserved eumelanin‐bearing bodies, dermal cells and blood vessel
 fragments in an organic matrix composed of protein fossilization products.
 The skin is much thinner than that of living mammals of similar size. It
 is likely that the preservation of hadrosaur skin is related to the
 arrangement of the layers composing it.
description: Supplemental figures and tables
DOI: 10.5061/dryad.63xsj3tzk
title: Genetic diversity within and between British and Irish breeds: the maternal and paternal history of native ponies

description: The UK and Ireland have many native pony breeds, yet there is a lack of
 comprehensive research investigating their genetic diversity and
 phylogenetic interrelationships. Many studies contain a limited number of
 pony breeds, or small sample sizes for these breeds. This may result in
 erroneous grouping of pony breeds that otherwise have intricate
 interrelationships with each other and are not evaluated correctly when
 placed as a token subset of a larger dataset. This is the first study that
 specifically investigates the genetic diversity within and between British
 and Irish native pony breeds using large sample numbers from locations of
 their native origin. This study used a panel of microsatellite markers and
 sequence analysis of the mitochondrial control region to analyse the
 genetic diversity within and between 11 pony breeds from Britain and
 Ireland. A large dataset was collected and previously published data were
 used to place the British and Irish ponies in a global context. The native
 ponies of Britain and Ireland were found to have had a complex history and
 the interrelationships between the breeds were revealed. Overall, high
 levels of genetic diversity were present, including maintenance of rare
 ancient matrilines in the Welsh and Fell breeds. In contrast the Dartmoor
 showed limited maternal diversity. A number of unexpected shared ancestral
 origins were elucidated between some breeds. The data generated herein
 provides valuable information to guide and implement the conservation of
 increasingly rare native genetic resources.