cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/v92eav
title: Ecological Function and Biodiversity Indicators in European Soils (EcoFINDERS)

description: This dataset is part of Edaphobase. Edaphobase is a data warehouse that collects information from literature, museum collections and research data about the distribution and ecology of soil organisms (earthworms, potworms, nematodes, springtails, proturans, diplurans, moss/beetle mites, gamasina mites, centipedes, millipedes, woodlice, soil fungi and soil prokaryotes). You can discover the whole Edaphobase data here: https://portal.edaphobase.org/ To get more information about Edaphobase please go to: https://edaphobase.org/ Data ownersPaul Henning Krogh, Stephan Jänsch Discover the datahttps://portal.edaphobase.org/?qxenv:action:gbif&qxenv:sources:262184
DOI: 10.6084/m9.figshare.25295929
title: Stereo-seq Axolotl subset (30DPI, 60DPI and Adult) data [Wei et al.]

description: An AnnData object for the Stereo-seq axolotl subset (30DPI, 60DPI and Adult) data from Wei et al.The Stereo-seq axolotl data [Wei et al., 2022] are available in the Spatial Transcript Omics DataBase (STOmics DB) under https://db.cngb.org/stomics/ artista/.
DOI: 10.6084/m9.figshare.25295929.v1
title: Stereo-seq Axolotl subset (30DPI, 60DPI and Adult) data [Wei et al.]

description: An AnnData object for the Stereo-seq axolotl subset (30DPI, 60DPI and Adult) data from Wei et al.The Stereo-seq axolotl data [Wei et al., 2022] are available in the Spatial Transcript Omics DataBase (STOmics DB) under https://db.cngb.org/stomics/ artista/.
DOI: 10.15468/2abcyr
title: ONF - Données issues d'études conventionnelles commandées par organismes exterieurs à l'ONF - MOA : Département Santé des Forêts (DSF) - ONF - DFF Import Piegeage monochamus

description: Données DFF pour DSF - Données transmises à l'ONF dans le cadre d'études commandées par MOA axterieures à l'ONF
DOI: 10.6084/m9.figshare.7807730
title: Additional file 2: of Inflammatory, regulatory, and autophagy co-expression modules and hub genes underlie the peripheral immune response to human intracerebral hemorrhage

description: Table S1. Subjects' demographic information and clinical characteristics. Table S2. List of all 21,175 genes and their respective modules. Table S3. Hypergeometric probability testing for all p(Dx) &lt; 0.05 modules to all cell-types studied in this document. Table S4. List of the top 5% of the most interconnected genes (based on intramodular connectivity - kIN) within each module. Green-highlighted genes are amongst the top 1%. Table S5. IPA canonical pathways for only the hubs within modules with p(Dx) &lt; 0.05. Pathways in peach color are significant following Benjamini-Hochberg (B-H) correction. Pathways in tan color - only following Fisher’s test. Table S6. p-values for each module with respect to diagnosis (A) and time since event (B). Table S7. IPA canonical pathways for all genes within modules that showed p(Dx) &lt; 0.05. Pathways in peach color are significant following Benjamini-Hochberg correction. Pathways in tan color - only following Fisher’s test. Table S8. DAVID Gene Ontology results for all modules that showed p(Dx) &lt; 0.05. Pathways in peach color are significant following Benjamini-Hochberg correction. Pathways in tan color - only following Fisher’s test. Table S9. List of differentially expressed genes (DEGs) and their respective fold-changes for genes amongst the 21,175 gene list (A). List of hub genes from the 1225 DEGs identified and their respective modules (B). IPA canonical pathways of only the list of 1225 DEGs (C). Cell-type involvement on all 1225 DEGs from this study (D). Cell-type involvement on only hub genes within the 1225 DEGs from this study (E). List of DEGs from this study that overlapped with the DEGs identified in Carmichael, et al. [15] (F). Cell-type enrichment on 46 DEGs that overlapped between this study and Carmichael’s study [15] (G). IPA canonical pathways of only the 46 DEGs that overlapped between this study and Carmichael’s study [15] (H). (XLSX 756 kb)
DOI: 10.6084/m9.figshare.7807730.v1
title: Additional file 2: of Inflammatory, regulatory, and autophagy co-expression modules and hub genes underlie the peripheral immune response to human intracerebral hemorrhage

description: Table S1. Subjects' demographic information and clinical characteristics. Table S2. List of all 21,175 genes and their respective modules. Table S3. Hypergeometric probability testing for all p(Dx) &lt; 0.05 modules to all cell-types studied in this document. Table S4. List of the top 5% of the most interconnected genes (based on intramodular connectivity - kIN) within each module. Green-highlighted genes are amongst the top 1%. Table S5. IPA canonical pathways for only the hubs within modules with p(Dx) &lt; 0.05. Pathways in peach color are significant following Benjamini-Hochberg (B-H) correction. Pathways in tan color - only following Fisher’s test. Table S6. p-values for each module with respect to diagnosis (A) and time since event (B). Table S7. IPA canonical pathways for all genes within modules that showed p(Dx) &lt; 0.05. Pathways in peach color are significant following Benjamini-Hochberg correction. Pathways in tan color - only following Fisher’s test. Table S8. DAVID Gene Ontology results for all modules that showed p(Dx) &lt; 0.05. Pathways in peach color are significant following Benjamini-Hochberg correction. Pathways in tan color - only following Fisher’s test. Table S9. List of differentially expressed genes (DEGs) and their respective fold-changes for genes amongst the 21,175 gene list (A). List of hub genes from the 1225 DEGs identified and their respective modules (B). IPA canonical pathways of only the list of 1225 DEGs (C). Cell-type involvement on all 1225 DEGs from this study (D). Cell-type involvement on only hub genes within the 1225 DEGs from this study (E). List of DEGs from this study that overlapped with the DEGs identified in Carmichael, et al. [15] (F). Cell-type enrichment on 46 DEGs that overlapped between this study and Carmichael’s study [15] (G). IPA canonical pathways of only the 46 DEGs that overlapped between this study and Carmichael’s study [15] (H). (XLSX 756 kb)
DOI: 10.15468/q2y8b2
title: Khatlon Scientific Center

description: This dataset contains specimens from the herbarium at Khatlon Scientific Center. The specimens were imaged by herbarium staff, and published via an automatic process: 1) OCR text was gathered from the specimen images using Google Vision API, and 2) Darwin Core Terms were extracted automatically from the OCR text by OpenAI's GPT4 API. Some errors and missing data are to be expected, please contact the data owners with any corrections.
DOI: 10.6084/m9.figshare.25295902
title: Stereo-seq Axolotl regeneration data [Wei et al.]

description: An AnnData object for the Stereo-seq axolotl regeneration data from Wei et al.The Stereo-seq axolotl data [Wei et al., 2022] are available in the Spatial Transcript Omics DataBase (STOmics DB) under https://db.cngb.org/stomics/ artista/.
DOI: 10.6084/m9.figshare.25295902.v1
title: Stereo-seq Axolotl regeneration data [Wei et al.]

description: An AnnData object for the Stereo-seq axolotl regeneration data from Wei et al.The Stereo-seq axolotl data [Wei et al., 2022] are available in the Spatial Transcript Omics DataBase (STOmics DB) under https://db.cngb.org/stomics/ artista/.
DOI: 10.6084/m9.figshare.25295890
title: Stereo-seq Axolotl developmental data [Wei et al.]

description: An AnnData object for the Stereo-seq axolotl developmental data from Wei et al.The Stereo-seq axolotl data [Wei et al., 2022] are available in the Spatial Transcript Omics DataBase (STOmics DB) under https://db.cngb.org/stomics/ artista/.
DOI: 10.6084/m9.figshare.25295890.v1
title: Stereo-seq Axolotl developmental data [Wei et al.]

description: An AnnData object for the Stereo-seq axolotl developmental data from Wei et al.The Stereo-seq axolotl data [Wei et al., 2022] are available in the Spatial Transcript Omics DataBase (STOmics DB) under https://db.cngb.org/stomics/ artista/.
DOI: 10.6084/m9.figshare.15147903
title: Comprehensive RNA-seq analysis revealed gene network associated with leaf morphogenesis in <i>Vitis vinifera</i>

description: Leaf morphogenesis in <i>Vitis vinifera</i> is closely associated with the biosynthesis of various metabolites, starch, and growth-related molecules. In the present study, Illumina RNA deep sequencing-based on transcriptome analysis was deployed to understand leaf morphogenesis in <i>Vitis vinifera</i>. The KEGG pathway analysis revealed the transcripts involved in the biosynthesis of major metabolites leading to leaf growth. The highest number of DEGs were down-regulated at young leave-vs-mature leaves stages (3,501) followed by large leaves-vs-mature leaves (2,364); however, the minimum number of up-regulated transcripts were recorded at young leaves-vs-immature leaves (195). The gene regulation in the starch biosynthetic pathway, young leaves-vs-mature leaves showed the highest number of transcripts (24 up-regulated and 60 down-regulated). For ABC Transporters, 224 transcripts were expressed, among which the maximum number of transcripts (59) were recorded in large leaves-vs-mature leaves. Amino and nucleotide sugar metabolism showed 112 transcripts (22 up-regulated and 90 down-regulated), in which immature leaves-vs-mature leaves expressed 30 DEGs. In addition, Flavonoid pathway showed the highest number of transcripts i.e. 903 were expressed among the studied pathways. The findings of this study will also help to a better understanding of the underlying process during grape leaf morphogenesis and to unravel the mechanism.
DOI: 10.6084/m9.figshare.13050797
title: Longitudinal Pharmacometabonomics for Predicting Malignant Tumor Patient Responses to Anlotinib Therapy: Phenotype, Efficacy and Toxicity

description: Metabolomic profiling data of the manuscript "Longitudinal Pharmacometabonomics for Predicting Malignant Tumor Patient Responses to Anlotinib Therapy: Phenotype, Efficacy and Toxicity"
DOI: 10.6084/m9.figshare.7283657
title: Lake Catchment Set

description: A freely available data set of inland lake catchments including lakes, location, shape, area, perimeter, etc. over the Qiangtang Plateau which is a main part of the Tibetan Plateau. The data set is derived from Landset8 images, Google Earth and Digital Elevation Model (DEM). It will provide important basic information for researchers to study the changes of meteorology, hydrology and environment and its mechanism in Qinghai-Tibet Plateau.
DOI: 10.6084/m9.figshare.14099417
title: Machine learning bridges microslips and slip avalanches of sheared granular gouge

description: Understanding the origin of stress avalanche of fault
gouges may offer deeper insights into many geophysical processes such as
earthquakes. Microslips of sheared granular gouges were found to be precursors
of large slip events, but the documented relation between local and global
avalanches remains largely qualitative. We examine the stick-slip behavior of a slowly sheared granular system using
discete element method simulations. The microslips,
i.e., local avalanche events, are found to demonstrate significantly different
statistical and spatial characteristics between the stick and slip states. We further
investigate the correlation between the global stress fluctuations and the
features extracted from microslips based on the machine learning (ML) approach.
The data-driven model that incorporates the information of the spatial
distribution of microslips can robustly predict the magnitude of stress
fluctuation. A further feature importance analysis confirms
that the spatial patterns of microslips manifest key
information governing the global stress fluctuations.
DOI: 10.6084/m9.figshare.23536504.v1
title: Effects of oxycodone hydrochloride and dezocine on hemodynamics and levels of inflammatory factors in patients receiving gynecological laparoscopic surgery under general anesthesia

description: Abstract We aimed to compare the effects of oxycodone hydrochloride and dezocine on hemodynamics and inflammatory factors in patients receiving gynecological laparoscopic surgery under general anesthesia. A total of 246 patients were divided into group A and B (n=123). Hemorheology indices were recorded 5 min after anesthesia (T0), 1 min after pneumoperitoneum (T1), when position was changed 5 min after pneumoperitoneum (T2), 15 min after pneumoperitoneum (T3), 1 min (T4) and 5 min (T5) after position was restored. Visual analogue scale scores 1, 2, 6, 12, 24 and 48 h after operation were recorded. Postoperative adverse reactions and visceral pain were observed. The expression levels of inflammatory factors were detected by enzyme-linked immunosorbent assay 12 h after operation. Compared with group A, group B had higher heart rate and mean arterial pressure at T2, lower central venous pressure and cardiac output at T1-T3, and higher systemic vascular resistance at T1-T5 (P&lt;0.05). The incidence rate of pain syndrome in group A was lower (P&lt;0.05). Group A had lower tumor necrosis factor-alpha and interleukin-6 expression levels and higher interleukin-10 level than those of group B (P&lt;0.05). For gynecological laparoscopic surgery, oxycodone preemptive analgesia has superior outcomes to those of dezocine.
DOI: 10.6084/m9.figshare.23536504
title: Effects of oxycodone hydrochloride and dezocine on hemodynamics and levels of inflammatory factors in patients receiving gynecological laparoscopic surgery under general anesthesia

description: Abstract We aimed to compare the effects of oxycodone hydrochloride and dezocine on hemodynamics and inflammatory factors in patients receiving gynecological laparoscopic surgery under general anesthesia. A total of 246 patients were divided into group A and B (n=123). Hemorheology indices were recorded 5 min after anesthesia (T0), 1 min after pneumoperitoneum (T1), when position was changed 5 min after pneumoperitoneum (T2), 15 min after pneumoperitoneum (T3), 1 min (T4) and 5 min (T5) after position was restored. Visual analogue scale scores 1, 2, 6, 12, 24 and 48 h after operation were recorded. Postoperative adverse reactions and visceral pain were observed. The expression levels of inflammatory factors were detected by enzyme-linked immunosorbent assay 12 h after operation. Compared with group A, group B had higher heart rate and mean arterial pressure at T2, lower central venous pressure and cardiac output at T1-T3, and higher systemic vascular resistance at T1-T5 (P&lt;0.05). The incidence rate of pain syndrome in group A was lower (P&lt;0.05). Group A had lower tumor necrosis factor-alpha and interleukin-6 expression levels and higher interleukin-10 level than those of group B (P&lt;0.05). For gynecological laparoscopic surgery, oxycodone preemptive analgesia has superior outcomes to those of dezocine.
DOI: 10.6084/m9.figshare.15147903.v1
title: Comprehensive RNA-seq analysis revealed gene network associated with leaf morphogenesis in <i>Vitis vinifera</i>

description: Leaf morphogenesis in <i>Vitis vinifera</i> is closely associated with the biosynthesis of various metabolites, starch, and growth-related molecules. In the present study, Illumina RNA deep sequencing-based on transcriptome analysis was deployed to understand leaf morphogenesis in <i>Vitis vinifera</i>. The KEGG pathway analysis revealed the transcripts involved in the biosynthesis of major metabolites leading to leaf growth. The highest number of DEGs were down-regulated at young leave-vs-mature leaves stages (3,501) followed by large leaves-vs-mature leaves (2,364); however, the minimum number of up-regulated transcripts were recorded at young leaves-vs-immature leaves (195). The gene regulation in the starch biosynthetic pathway, young leaves-vs-mature leaves showed the highest number of transcripts (24 up-regulated and 60 down-regulated). For ABC Transporters, 224 transcripts were expressed, among which the maximum number of transcripts (59) were recorded in large leaves-vs-mature leaves. Amino and nucleotide sugar metabolism showed 112 transcripts (22 up-regulated and 90 down-regulated), in which immature leaves-vs-mature leaves expressed 30 DEGs. In addition, Flavonoid pathway showed the highest number of transcripts i.e. 903 were expressed among the studied pathways. The findings of this study will also help to a better understanding of the underlying process during grape leaf morphogenesis and to unravel the mechanism.
DOI: 10.6084/m9.figshare.23536521
title: TMEM147 is a novel biomarker for diagnosis and prognosis of hepatocellular carcinoma

description: Abstract Hepatocellular carcinoma (HCC) is the most common type of liver malignancy with high incidence and poor prognosis. Transmembrane protein 147 (TMEM147) has been implicated in the development of colon cancer. However, the role of TMEM147 in HCC remains unclear. In this study, data of 371 HCC tissues, 50 adjacent nontumor tissues, and 110 normal liver tissues were retrieved from the TCGA and GTEx databases. TMEM147 expression was found to be increased in HCC tissues. High expression of TMEM147 was related to poor prognosis, and TMEM147 was confirmed to be an independent prognostic factor for HCC patients. A receiver operating characteristics (ROC) analysis was performed and showed that the diagnostic efficacy of TMEM147 was significantly higher than that of AFP (0.908 versus 0.746, p &lt; 0.001). Furthermore, TMEM147 promoted tumor immune infiltration, and macrophages were the immune cells that predominantly expressed TMEM147 in HCC. Further analysis revealed that TMEM147 mainly impacted the ribosome pathway, and CTCF, MLLT1, TGIF2, ZNF146, and ZNF580 were predicted to be the upstream transcription factors for TMEM147 in HCC. These results suggest that TMEM147 serves as a promising biomarker for diagnosis and prognosis and may potentially become a therapeutic target for HCC.
DOI: 10.6084/m9.figshare.23536521.v1
title: TMEM147 is a novel biomarker for diagnosis and prognosis of hepatocellular carcinoma

description: Abstract Hepatocellular carcinoma (HCC) is the most common type of liver malignancy with high incidence and poor prognosis. Transmembrane protein 147 (TMEM147) has been implicated in the development of colon cancer. However, the role of TMEM147 in HCC remains unclear. In this study, data of 371 HCC tissues, 50 adjacent nontumor tissues, and 110 normal liver tissues were retrieved from the TCGA and GTEx databases. TMEM147 expression was found to be increased in HCC tissues. High expression of TMEM147 was related to poor prognosis, and TMEM147 was confirmed to be an independent prognostic factor for HCC patients. A receiver operating characteristics (ROC) analysis was performed and showed that the diagnostic efficacy of TMEM147 was significantly higher than that of AFP (0.908 versus 0.746, p &lt; 0.001). Furthermore, TMEM147 promoted tumor immune infiltration, and macrophages were the immune cells that predominantly expressed TMEM147 in HCC. Further analysis revealed that TMEM147 mainly impacted the ribosome pathway, and CTCF, MLLT1, TGIF2, ZNF146, and ZNF580 were predicted to be the upstream transcription factors for TMEM147 in HCC. These results suggest that TMEM147 serves as a promising biomarker for diagnosis and prognosis and may potentially become a therapeutic target for HCC.
DOI: 10.25403/upresearchdata.25310293
title: Capacity development for innovation and adoption of technologies in the Ugandan banana value chain

description: This data was collected from the three agroecological zones (AEZ) traditionally known for producing bananas. File 03-05-2020 Final merged data set clean (1) was collected from the households from the AEZ and it entails the farm and farmer characteristics, stakeholders and their roles in banana value chain and the capacity development needs of each of the stakeholders. File Qualitative from HH survey is an extract of qualitative responses from the household survey while file Key points from qualitative data contains a summary of the findings from key informant interviews and focus group discussions with banana farmers, traders, processors and research agents.
DOI: 10.15468/72275b
title: Ants occurrence data from five countries in west Africa

description: Ants data from articles, reports and papers in 5 West African countries
DOI: 10.5281/zenodo.10726059
title: Legal interpretations data for evaluation using LLMs
DOI: 10.5281/zenodo.10726060
title: Legal interpretations data for evaluation using LLMs
DOI: 10.15468/p5d276
title: Ants (Formicidae) from the UWIZM Land Arthropod collection

description: This dataset contains the records of ants belonging to UWIZM’s land arthropod collection. There are 1092 ants all belonging to the family Formicidae. These specimens are all stored in the Land Arthropod Room of the UWIZM.
DOI: 10.15468/acd9cw
title: Floral Survey of Surat Metro Rail Phase I

description: The floristic survey was carried out along the metro rail network spread in Surat city. During the study, numerous line transects (with lengths of 250 m each) were laid on both sides of the Metro rail track at intervals of 500m and plant inventory was carried out to make comprehensive checklist of plants.
DOI: 10.15468/kkxs2j
title: 2023_deoksan_mammal_observation_information_nsmk_47

description: 2023 Deoksan Provincial Park Investigation
Subject to investigation: Mammal
DOI: 10.15468/82ekf7
title: Inventaire des coléoptères saproxyliques de France métropolitaine - Données Coléoptères Benoît TOURY

description: Données Coléoptères Benoît TOURY, issues de la base de données SERENA
DOI: 10.6084/m9.figshare.20390925
title: Additional file 2 of Polarization disorder of decidual NK cells in unexplained recurrent spontaneous abortion revealed by single-cell transcriptome analysis

description: Additional file 2: Supplement Table 2. Marker genes significantly expressed by each cell cluster.
DOI: 10.6084/m9.figshare.20390925.v1
title: Additional file 2 of Polarization disorder of decidual NK cells in unexplained recurrent spontaneous abortion revealed by single-cell transcriptome analysis

description: Additional file 2: Supplement Table 2. Marker genes significantly expressed by each cell cluster.
DOI: 10.6084/m9.figshare.20390922.v1
title: Additional file 1 of Polarization disorder of decidual NK cells in unexplained recurrent spontaneous abortion revealed by single-cell transcriptome analysis

description: Additional file 1: Supplement Table 1. A total of nearly 30000 marker genes were identified in all cell samples.
DOI: 10.6084/m9.figshare.20390922
title: Additional file 1 of Polarization disorder of decidual NK cells in unexplained recurrent spontaneous abortion revealed by single-cell transcriptome analysis

description: Additional file 1: Supplement Table 1. A total of nearly 30000 marker genes were identified in all cell samples.
DOI: 10.15468/hnatss
title: RN 580 - Transformation du carrefour en T existant en carrefour giratoire en sortie de l'autoroute A9 N°22 sur la commune de Roquemaure dans le département du Gard-Données Flore Roquemaure

description: Tables de données flore produites en 2021 pour le projet de Roquemaure