cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25885001.v1
title: Additional file 1 of Analysis of admixed Greenlandic siblings shows that the mean genotypic values for metabolic phenotypes differ between Inuit and Europeans

description: Additional file 1. Table S1: Phenotypic difference between Inuit and Europeans. Effect sizes, standard errors and FDR adjusted p values of the estimated phenotypic difference from different models and cohorts. Table S2: Difference in mean genotypic values between Inuit and Europeans. Effect size, standard errors and FDR adjusted p values of the estimated difference in mean genotypic values from different models.
DOI: 10.6084/m9.figshare.25885001
title: Additional file 1 of Analysis of admixed Greenlandic siblings shows that the mean genotypic values for metabolic phenotypes differ between Inuit and Europeans

description: Additional file 1. Table S1: Phenotypic difference between Inuit and Europeans. Effect sizes, standard errors and FDR adjusted p values of the estimated phenotypic difference from different models and cohorts. Table S2: Difference in mean genotypic values between Inuit and Europeans. Effect size, standard errors and FDR adjusted p values of the estimated difference in mean genotypic values from different models.
DOI: 10.6084/m9.figshare.26723487
title: Additional file 3 of Variant-specific pathophysiological mechanisms of AFF3 differently influence transcriptome profiles

description: Additional file 3. This Excel file contains nine supplementary tables cataloging transcriptomic (S3-S4 and S7-S10) and Chromatin-IP (S5-S6) results and their intersection (S7) Table S3. DEGs (Differentially Expressed Genes) in biallelic loss-of-function (LoF/LoF) AFF3 HEK293T lines. Table S4. DEGs in homozygous dominant negative (DN/DN) KINSSHIP AFF3 HEK293T lines. Table S5. AFF3 ChIP-seq peaks in HEK293T cells. Table S6. AFF3 ChIP-seq peaks in M. musculus ES cells. Table S7. DEGs and AFF3 ChIP-seq peaks intersections. Table S8. DEGs in heterozygous loss-of-function (LoF/+) AFF3 HEK293T lines. Table S9. DEGs in compound heterozygote dominant negative/ loss-of-function (DN/LoF) AFF3 HEK293T lines. Table S10. DEGs in patients’ fibroblasts. Table S11. number of AFF3 reads at different location (in patients’ fibroblasts).
DOI: 10.6084/m9.figshare.26723487.v1
title: Additional file 3 of Variant-specific pathophysiological mechanisms of AFF3 differently influence transcriptome profiles

description: Additional file 3. This Excel file contains nine supplementary tables cataloging transcriptomic (S3-S4 and S7-S10) and Chromatin-IP (S5-S6) results and their intersection (S7) Table S3. DEGs (Differentially Expressed Genes) in biallelic loss-of-function (LoF/LoF) AFF3 HEK293T lines. Table S4. DEGs in homozygous dominant negative (DN/DN) KINSSHIP AFF3 HEK293T lines. Table S5. AFF3 ChIP-seq peaks in HEK293T cells. Table S6. AFF3 ChIP-seq peaks in M. musculus ES cells. Table S7. DEGs and AFF3 ChIP-seq peaks intersections. Table S8. DEGs in heterozygous loss-of-function (LoF/+) AFF3 HEK293T lines. Table S9. DEGs in compound heterozygote dominant negative/ loss-of-function (DN/LoF) AFF3 HEK293T lines. Table S10. DEGs in patients’ fibroblasts. Table S11. number of AFF3 reads at different location (in patients’ fibroblasts).
DOI: 10.6084/m9.figshare.25876059
title: Additional file 1 of An updated analysis of safety climate and downstream outcomes in two convenience samples of U.S. fire departments (FOCUS 1.0 and 2.0 survey waves)

description: Additional file 1: Supplemental Table 1. Linear regression models examining the relationship between safety climate scores and safety behaviors/organizational outcomes for FOCUS 1.0 and FOCUS 2.0, adjusting for organization type. Supplemental Table 2. Multilevel logistic regression between safety climate and injury status for FOCUS 1.0 and 2.0, adjusting for organization type. Supplemental Table 3. Linear regression models examining the relationship between safety climate scores and safety behaviors/organizational outcomes for FOCUS 1.0 and FOCUS 2.0 overall and stratified by organization type, excluding departments that have assessed with FOCUS more than once. Supplemental Table 4. Multilevel logistic regression between safety climate and injury status among individuals stratified by organization type for FOCUS 1.0 and 2.0, excluding departments that have assessed with FOCUS more than once. Supplemental Table 5. Linear regression models examining the relationship between safety climate scores and safety behaviors/organizational outcomes for FOCUS 1.0 and FOCUS 2.0 overall and stratified by organization type, excluding departments with &lt;60% response rate. Supplemental Table 6. Multilevel logistic regression between safety climate and injury status among individuals stratified by organization type for FOCUS 1.0 and 2.0, excluding departments with &lt;60% response rate. Supplemental Table 7. Descriptive characteristics of FOCUS 1.0 and 2.0 analytic sample stratified by fire department organization type, for comparison between departments that assessed before and during the U.S. COVID-19 response. Supplemental Table 8. Linear regression models examining the relationship between safety climate scores and safety behaviors/organizational outcomes for FOCUS 2.0 overall and stratified by organization type, for comparison between departments that assessed before and during the U.S. COVID-19 response. Supplemental Table 9. Multilevel logistic regression between safety climate and injury status among individuals stratified by organization type for FOCUS 2.0, for comparison between departments that assessed before and during the U.S. COVID-19 response.
DOI: 10.6084/m9.figshare.25876059.v1
title: Additional file 1 of An updated analysis of safety climate and downstream outcomes in two convenience samples of U.S. fire departments (FOCUS 1.0 and 2.0 survey waves)

description: Additional file 1: Supplemental Table 1. Linear regression models examining the relationship between safety climate scores and safety behaviors/organizational outcomes for FOCUS 1.0 and FOCUS 2.0, adjusting for organization type. Supplemental Table 2. Multilevel logistic regression between safety climate and injury status for FOCUS 1.0 and 2.0, adjusting for organization type. Supplemental Table 3. Linear regression models examining the relationship between safety climate scores and safety behaviors/organizational outcomes for FOCUS 1.0 and FOCUS 2.0 overall and stratified by organization type, excluding departments that have assessed with FOCUS more than once. Supplemental Table 4. Multilevel logistic regression between safety climate and injury status among individuals stratified by organization type for FOCUS 1.0 and 2.0, excluding departments that have assessed with FOCUS more than once. Supplemental Table 5. Linear regression models examining the relationship between safety climate scores and safety behaviors/organizational outcomes for FOCUS 1.0 and FOCUS 2.0 overall and stratified by organization type, excluding departments with &lt;60% response rate. Supplemental Table 6. Multilevel logistic regression between safety climate and injury status among individuals stratified by organization type for FOCUS 1.0 and 2.0, excluding departments with &lt;60% response rate. Supplemental Table 7. Descriptive characteristics of FOCUS 1.0 and 2.0 analytic sample stratified by fire department organization type, for comparison between departments that assessed before and during the U.S. COVID-19 response. Supplemental Table 8. Linear regression models examining the relationship between safety climate scores and safety behaviors/organizational outcomes for FOCUS 2.0 overall and stratified by organization type, for comparison between departments that assessed before and during the U.S. COVID-19 response. Supplemental Table 9. Multilevel logistic regression between safety climate and injury status among individuals stratified by organization type for FOCUS 2.0, for comparison between departments that assessed before and during the U.S. COVID-19 response.
DOI: 10.6084/m9.figshare.25876301
title: Additional file 2 of An updated analysis of safety climate and downstream outcomes in two convenience samples of U.S. fire departments (FOCUS 1.0 and 2.0 survey waves)

description: Additional file 2: Supplemental Figure 1. Flowcharts of the analytic samples for FOCUS 1.0 and FOCUS 2.0 survey waves. Supplemental Figure 2A. Box and whisker plots comparing FOCUS safety climate scores by size variables for FOCUSv.1.0 departments. Supplemental Figure 2B. Box and whisker plots comparing FOCUS safety climate scores by size variables for FOCUSv.2.0 departments.
DOI: 10.6084/m9.figshare.25876301.v1
title: Additional file 2 of An updated analysis of safety climate and downstream outcomes in two convenience samples of U.S. fire departments (FOCUS 1.0 and 2.0 survey waves)

description: Additional file 2: Supplemental Figure 1. Flowcharts of the analytic samples for FOCUS 1.0 and FOCUS 2.0 survey waves. Supplemental Figure 2A. Box and whisker plots comparing FOCUS safety climate scores by size variables for FOCUSv.1.0 departments. Supplemental Figure 2B. Box and whisker plots comparing FOCUS safety climate scores by size variables for FOCUSv.2.0 departments.
DOI: 10.6084/m9.figshare.26723651
title: Additional file 50 of The role of seven tumor-associated autoantibodies in the diagnosis, staging and treatment guidance of lung cancer

description: Supplementary Material 50
DOI: 10.6084/m9.figshare.26723654
title: Additional file 51 of The role of seven tumor-associated autoantibodies in the diagnosis, staging and treatment guidance of lung cancer

description: Supplementary Material 51
DOI: 10.6084/m9.figshare.26723654.v1
title: Additional file 51 of The role of seven tumor-associated autoantibodies in the diagnosis, staging and treatment guidance of lung cancer

description: Supplementary Material 51
DOI: 10.6084/m9.figshare.26723657
title: Additional file 3 of A recurrent de novo missense mutation in COL1A1 causes osteogenesis imperfecta type II and preterm delivery in Normande cattle

description: Additional file 3: Table S3. Extract from 243 vertebrate orthologs around the bovine COL1A1 p.D1412N substitution ± 20 amino acids. The complete protein sequences were obtained from Ensembl release 110 ( www.ensembl.org/ ) and aligned using CLUSTALW ( https://www.genome.jp/tools-bin/clustalw ).
DOI: 10.6084/m9.figshare.26723657.v1
title: Additional file 3 of A recurrent de novo missense mutation in COL1A1 causes osteogenesis imperfecta type II and preterm delivery in Normande cattle

description: Additional file 3: Table S3. Extract from 243 vertebrate orthologs around the bovine COL1A1 p.D1412N substitution ± 20 amino acids. The complete protein sequences were obtained from Ensembl release 110 ( www.ensembl.org/ ) and aligned using CLUSTALW ( https://www.genome.jp/tools-bin/clustalw ).
DOI: 10.6084/m9.figshare.26723660
title: Additional file 4 of A recurrent de novo missense mutation in COL1A1 causes osteogenesis imperfecta type II and preterm delivery in Normande cattle

description: Additional file 4: Figure S1. Electropherograms of selected individuals for a 40-bp segment encompassing the COL1A1 candidate variant. Electropherograms of an affected calf, a control half-sib carrying the at-risk haplotype in its ancestral version (i.e., without the mutation), and their sire Ly. The region displayed ranges from positions 36,473,946 to 36,473,985 bp on BTA19. The position of the candidate substitution is highlighted in red; *Note the low proportion of allele A versus G in Ly supporting germline mosaicism.
DOI: 10.6084/m9.figshare.26723660.v1
title: Additional file 4 of A recurrent de novo missense mutation in COL1A1 causes osteogenesis imperfecta type II and preterm delivery in Normande cattle

description: Additional file 4: Figure S1. Electropherograms of selected individuals for a 40-bp segment encompassing the COL1A1 candidate variant. Electropherograms of an affected calf, a control half-sib carrying the at-risk haplotype in its ancestral version (i.e., without the mutation), and their sire Ly. The region displayed ranges from positions 36,473,946 to 36,473,985 bp on BTA19. The position of the candidate substitution is highlighted in red; *Note the low proportion of allele A versus G in Ly supporting germline mosaicism.
DOI: 10.6084/m9.figshare.26723663
title: Additional file 5 of A recurrent de novo missense mutation in COL1A1 causes osteogenesis imperfecta type II and preterm delivery in Normande cattle

description: Additional file 5: Figure S2. Macroscopic and microscopic view of the teeth of case and control calves. (a, b) Images of the lower jaw showing poorly erupted incisors in the affected calf (a) compared to the control (b). (c, d) Histological sections of the first incisor stained with HE. De: Dentin. Dp: Dental pulp. Note the marked reduction in dentin thickness and the irregular shape of the margin between the dentin and pulp cavity in the case (c) compared to the control calf (d). Both are features of OI.
DOI: 10.6084/m9.figshare.26723663.v1
title: Additional file 5 of A recurrent de novo missense mutation in COL1A1 causes osteogenesis imperfecta type II and preterm delivery in Normande cattle

description: Additional file 5: Figure S2. Macroscopic and microscopic view of the teeth of case and control calves. (a, b) Images of the lower jaw showing poorly erupted incisors in the affected calf (a) compared to the control (b). (c, d) Histological sections of the first incisor stained with HE. De: Dentin. Dp: Dental pulp. Note the marked reduction in dentin thickness and the irregular shape of the margin between the dentin and pulp cavity in the case (c) compared to the control calf (d). Both are features of OI.
DOI: 10.6084/m9.figshare.25876312
title: Additional file 2 of Genome-wide identification of replication fork stalling/pausing sites and the interplay between RNA Pol II transcription and DNA replication progression

description: Additional file 2: Table S1. Genes differentially expressed following DRB or a-Am treatment.
DOI: 10.6084/m9.figshare.25876312.v1
title: Additional file 2 of Genome-wide identification of replication fork stalling/pausing sites and the interplay between RNA Pol II transcription and DNA replication progression

description: Additional file 2: Table S1. Genes differentially expressed following DRB or a-Am treatment.
DOI: 10.6084/m9.figshare.26723708
title: Additional file 3 of Genome-wide identification of replication fork stalling/pausing sites and the interplay between RNA Pol II transcription and DNA replication progression

description: Additional file 3: Table S2. Statistical analysis of BrdU peaks overlap with breakpoints.
DOI: 10.6084/m9.figshare.26723708.v1
title: Additional file 3 of Genome-wide identification of replication fork stalling/pausing sites and the interplay between RNA Pol II transcription and DNA replication progression

description: Additional file 3: Table S2. Statistical analysis of BrdU peaks overlap with breakpoints.
DOI: 10.6084/m9.figshare.25876315
title: Additional file 2 of Diurnal control of iron responsive element containing mRNAs through iron regulatory proteins IRP1 and IRP2 is mediated by feeding rhythms

description: Additional file 2: Table S1. This table (.xls) contains the genes associated with the clusters 1-15 from Fig. 5I. Further information in the table header.
DOI: 10.6084/m9.figshare.25876315.v1
title: Additional file 2 of Diurnal control of iron responsive element containing mRNAs through iron regulatory proteins IRP1 and IRP2 is mediated by feeding rhythms

description: Additional file 2: Table S1. This table (.xls) contains the genes associated with the clusters 1-15 from Fig. 5I. Further information in the table header.
DOI: 10.34740/kaggle/dsv/9198931
title: Balochi Language to English Translation Dataset
DOI: 10.15468/dl.4fb7hv
title: Occurrence Download

description: A dataset containing 12046442 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Ecuador",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 12046442 records from 2167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072937-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ky4m4y
title: Occurrence Download

description: A dataset containing 84873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Campylopus introflexus (Hedw.) Brid."
 ]
}

 The dataset includes 84873 records from 445 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004308-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28280615
title: Example dataset for "Fast, three-dimensional, live-cell super-resolution imaging with multiplane structured illumination microscopy"

description: These are representative test data for the paper "Fast, three-dimensional, live-cell super-resolution imaging with multiplane structured illumination microscopy".‘F2-tubulin’ are raw data for the Fig. 2f‘F3-live mito’ are raw data for the Fig. 3d, corresponding to the 1th time point.‘F3-live er’ are raw data for the Fig. 3g, corresponding to the 1th time point.In the folder "SIM Result_example," the files contain reconstruction results of the test data, provided for reference.For a detailed reconstruction process, please refer to the Methods section and the 'readme.md' file on GitHub.
DOI: 10.15468/dl.b28be4
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Thailand",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dipterocarpus alatus Roxb."
 ]
}

 The dataset includes 34 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004310-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zud7sh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caldisphaera lagunensis Itoh et al., 2003",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004312-250214102907787/datasets/export for details.
DOI: 10.15468/dl.r84ssq
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is SANParks Herbarium Data for the Skukuza Herbarium"
 ]
}

 The dataset includes 99 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004313-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjuktv
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "Locality is Cugnaux",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 52 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004315-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60629/dsye-ke25
title: The data set used in the publication "Horses, gender, and (queer) masculine desire, or how experimental found footage film recycles three Hollywood films"

description: <p>The file contains the list of references and dataset related to the video file discussed in the article &#34;Horses, gender, and (queer) masculine desire, or how experimental found footage film recycles three Hollywood films&#34; (Adaptation, Volume 17, Issue 2, August 2024, Pages 265–283, https://doi.org/10.1093/adaptation/apae012)</p><p><br /></p><p><br /></p>
DOI: 10.15468/dl.8unfpt
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is SANParks Herbarium Data for the Skukuza Herbarium"
 ]
}

 The dataset includes 99 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004317-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwdqct
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "Geometry POLYGON((1.36544 43.53626,1.37225 43.53988,1.37618 43.54021,1.38224 43.54251,1.3842 43.5446,1.37876 43.54734,1.37634 43.54668,1.36726 43.54931,1.36378 43.54854,1.35425 43.55205,1.35107 43.54942,1.35697 43.54646,1.3544 43.54416,1.35592 43.54284,1.35455 43.54142,1.35849 43.53714,1.36544 43.53626))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EN, LC, NE)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 182 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004318-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14886195
title: Various Datasets Accompanying the Paper "Infusing Formal Methods into Ops-related Practices: Case Studies in Resource Allocation in the Cloud"

description: Various datasets accompagnig  the paper Infusing Formal Methods into Ops-related Practices: Case Studies in Resource Allocation in the Cloud. The code used for generating them and how to use them is available at here.



TrainingDatasets.zip contains datasets for 4 use cases. More details about the properties of the dataset is in the paper, Section 3.3.

GNNModels.zip contains datasets, for each of the 4 use cases, with graph neural networks trained using the above datasets with the architectures and hyperparameters as specified in the paper, Sections 4.1 and 5.2.

SMT-LIB.zip contains datasets, for each of the 4 use cases, with constrained optimization problems in the SMT-LIB format augumented with soft constraints extracted from GNN predictions as discussed in the paper, Sections 4.2 and 5.3.



StatDataFromSMT-LIB.zip contain datasets, for each of the 4 use cases, used for drafting the conclusions for the 3 research questions in the paper. The data is extracted from the SMT-LIB files above and contains information like Samples, Epochs, Batchsize, Offers, Type, Time, Price which is then used to draw the conclusions for RQ1-3.