cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16989037.v1
title: Supplementary Material for: Dysregulated Immunometabolism Is Associated with the Generation of Myeloid-Derived Suppressor Cells in <b><i>Staphylococcus aureus</i></b> Chronic Infection

description: Myeloid-derived suppressor cells (MDSCs) are a compendium of immature myeloid cells that exhibit potent T-cell suppressive capacity and expand during pathological conditions such as cancer and chronic infections. Although well-characterized in cancer, the physiology of MDSCs in the infection setting remains enigmatic. Here, we integrated single-cell RNA sequencing (scRNA-seq) and functional metabolic profiling to gain deeper insights into the factors governing the generation and maintenance of MDSCs in chronic <i>Staphylococcus aureus</i> infection. We found that MDSCs originate not only in the bone marrow but also at extramedullary sites in <i>S. aureus</i>-infected mice. scRNA-seq showed that infection-driven MDSCs encompass a spectrum of myeloid precursors in different stages of differentiation, ranging from promyelocytes to mature neutrophils. Furthermore, the scRNA-seq analysis has also uncovered valuable phenotypic markers to distinguish mature myeloid cells from immature MDSCs. Metabolic profiling indicates that MDSCs exhibit high glycolytic activity and high glucose consumption rates, which are required for undergoing terminal maturation. However, rapid glucose consumption by MDSCs added to infection-induced perturbations in the glucose supplies in infected mice hinders the terminal maturation of MDSCs and promotes their accumulation in an immature stage. In a proof-of-concept in vivo experiment, we demonstrate the beneficial effect of increasing glucose availability in promoting MDSC terminal differentiation in infected mice. Our results provide valuable information of how metabolic alterations induced by infection influence reprogramming and differentiation of MDSCs.
DOI: 10.60893/figshare.sss.26528239.v1
title: 01962-01

description: 6H-SiC IR-VUV optical properties Ordinary
DOI: 10.17035/d.2020.0113563620
title: Q factor and frequency data for parallel plate resonator calibration

description: Microwave surface resistance is evaluated using a novel parallel plate resonator fixture through the direct measurment of Quality factor and resoant frequency. Measurment data is available in .xlsx format, where measurments for each samples plate are recorded as coloum entries consiting of Frequency (Hz), Quailty factor and evaluated surface resistance(Ohms). Each table row corresponds to repeated measurment results. Samples measured include buk Al6082 and silver plated Al6082 as well as additive manufactured AlSi10Mg and Ti6Al4V. All measurments have been taken on a Keysight PNA under standard laboratory conditions.
DOI: 10.6084/m9.figshare.1289702.v1
title: Galatanet 1 Network Graphml

description: Social network extracted from the GN1 dataset, at the Graphml format. A few nodal attributes are included in this file, unlike the Pajek version of the same network (gn1.net)
DOI: 10.17632/b5y8dc399r
title: Zoledronic acid reduces the incidence of new developed compression fractures after vertebroplasty or kyphoplasty in patients with osteoporotic vertebral compression fractures

description: The research aims to determine the efficacy of once-yearly intravenous zoledronic acid in reducing the risk of osteoporotic vertebral compression fractures (OVCFs) after treatment by percutaneous vertebroplasty (PVP) and percutaneous kyphoplasty (PKP). A total of 144 patients were diagnosed with osteoporotic vertebral compression fractures from January 2012 to December 2017. These patients received PVP or PKP treatment at the Department of Orthopedics, Tangdu Hospital, Air Force Medical University. The painful vertebrae were confirmed based on clinical symptoms and a T2-weighted fat-suppression magnetic resonance image. The BMD was measured by dual-energy X-ray absorptiometry (DXA). However, 13 patients were not followed up for more than one year. The remaining 131 patients with at least one year follow-up were enrolled in the study.
DOI: 10.17632/wcpc467yyj
title: Supplementary material- Media Competence in the Curriculum from Latin American Countries: A Systematic Review

description: This dataset provides extended data supporting claims of a systematic review (PRISMA 2020 statement) about Media literacy in the curriculum of Latin American countries published in Media Education (Mediaobraziovane): a) research process; b) studies included; c) data.
DOI: 10.17632/w4vtszdytb
title: JAAD Dermatology Images-Herpes Simplex Supplementary Images

description: Supplemental images for JAAD Dermatology Images - Herpes Simplex
DOI: 10.17632/fvkp8n8bxt
title: Coffee Cultivation Dataset: Agriculture in Times of Climate Change

description: This important information on highland and lowland coffee cultivation is a good reference and a valuable resource to support agriculture during climate change. More importantly, it may help others grow plants in an ever-changing climate.
DOI: 10.6084/m9.figshare.3544448.v1
title: Appendix F. Soil moisture content in plant community soils and in plant-specific soils.

description: Soil moisture content in plant community soils and in plant-specific soils.
DOI: 10.17632/c3b563vzzp
title: Data for "Histotripsy treatment of murine brain and glioma: temporal profile of MRI and histological characteristics post-treatment"

description: The dataset includes raw MRI images and histology images acquired for the manuscript: Histotripsy treatment of murine brain and glioma: temporal profile of MRI and histological characteristics post-treatment.
Currently, only healthy mice MRI and histologies are uploaded due to large size of data. If the tumor bearing mice data is required, please email at csangwon@umich.edu
DOI: 10.17632/79sjfmkjs5
title: Dataset: Italian seismic amplification factors for peak ground acceleration and peak ground velocity

description: Ground motion modification over large areas is generally evaluated by focusing on source effects disregarding local lithostratigraphic site conditions. Hence, amplification maps of peak ground acceleration and peak ground velocity are proposed to improve the forecast of ground motion on a national scale. Topological information about litho-type successions and soil mechanical behaviour were retrieved from the Italian database of seismic microzonation and more than 30 million of seismic site response analyses were performed to quantify the amplification factors (i.e. the ratio between expected ground motion at the site of interest and that at the outcropping engineering bedrock). The maximum value of the amplified peak ground acceleration on the Italian territory results in about twice as much as the value expected at the outcropping of the engineering bedrock. Finally, damage scenario maps based on the amplified ground motion could be produced as a supporting tool for urban planning and emergency system management.
DOI: 10.6084/m9.figshare.28228892.v1
title: Supplementary Material for: A new tool to assess patient-ventilator synchrony in preterm infants receiving non-invasive ventilation: a randomized crossover pilot study

description: Introduction: Nasal synchronized intermittent positive pressure ventilation (nSIPPV) is an effective non-invasive ventilation technique, especially for preterm infants.
Patient-ventilator synchrony is essential for providing effective respiratory support; however, no automated system is currently available for monitoring this parameter. A new tool for automatic assessment of patient-ventilator synchrony, the SyncNIV system, was developed and applied in this pilot study to evaluate differences between nSIPPV and non-synchronized nasal intermittent positive pressure ventilation (nIPPV) in preterm infants with respiratory distress.
Methods: This study involved designing a custom algorithm for signal analysis. Data were collected through a polygraph that could simultaneously gather respiratory data from the patients and ventilator. Patient-ventilator synchrony was evaluated by applying the SyncNIV system in a randomized crossover study designed to compare nSIPPV and nIPPV. The primary outcome was the mean instant Synchrony Index (i-SI), defined as the portion of the inspiration effort sustained by ventilator inflation, expressed as a percentage.
Results: Fourteen infants with a median (IQR) gestational age of 28.6 (25.6-30.3), were enrolled.
We analyzed 43,304 ventilator inflations and 50,221 patient breaths. The i-SI was 54.69% (44.49-60.09) in nSIPPV and 39.54% (33.40-48.75) in nIPPV, p&lt;0.05.
Conclusion: The SyncNIV system confirmed better i-SI during nSIPPV than during nIPPV, demonstrating its effectiveness in assessing the differences between these two modes of non-invasive ventilation in preterm infants. The SyncNIV system could be a useful tool for optimizing the ventilation parameters and improving the effectiveness and comfort of respiratory support systems.
DOI: 10.17632/9m7kttygjp
title: Metallographic Images Used in Automated Microstructural Characterization and Grain Size Measurement in Ferritic-Pearlitic Steels and Nodular Cast Irons Using Machine Learning

description: This repository hosts the metallographic images used in the study "Automated Microstructural Characterization and Grain Size Measurement in Ferritic-Pearlitic Steels and Nodular Cast Irons Using Machine Learning." It contains high-resolution grayscale images of various metallographic samples prepared with controlled cutting, polishing, and etching processes. These images serve as the primary data for applying advanced image processing techniques—such as Fourier transform filtering, thresholding, and watershed segmentation—to isolate individual grains.
DOI: 10.6084/m9.figshare.14500374.v2
title: Disgust sensitivity is negatively associated with immune system activity in early pregnancy: Implications for obstetrical care

description: This study is a part of a larger prospective longitudinal project focusing on maternal emotional status in pregnancy and its biological correlates. The sample consisted of 78 pregnant women who were recruited between the 4<sup>th</sup> and 12<sup>th</sup> weeks of pregnancy. They completed a background questionnaire and questionnaires related to disgust sensitivity (DS-R) and nausea and vomiting (Rhodes index). Dataset also includes cytokine concentrations analyzed from blood samples.
DOI: 10.17632/33dx4p8d4n
title: Autophagosome content profiling using proximity biotinylation proteomics coupled to protease digestion in mammalian cells

description: The ascorbate peroxidase APEX2 is commonly used to study the neighborhood of a protein of interest by proximity-dependent biotinylation. Here, we describe a protocol for sample processing compatible with immunoblotting and mass spectrometry that is suitable to specifically map the content of autophagosomes and potentially other short-lived endomembrane transport vesicles without the need of subcellular fractionation. By combining live-cell biotinylation with proteinase K digestion of cell homogenates, proteins enriched in membrane-protected compartments can be readily enriched and identified. For complete details on the use and execution of this protocol, please refer to (Zellner et al., 2021).
DOI: 10.17632/tcbbtrhd9x
title: Data for: The Benefits of Water Information Systems: A Systematic Review

description: Coding database for systematic review of the economic impacts of water information systems
DOI: 10.17632/xxt5pft89k
title: Data for: A cooperative game approach for assessing the collision risk in multi-vessel encountering

description: The dataset include the decoded AIS data used for experiments.
DOI: 10.17632/jk4ggjysgp
title: Mouse visual cortex is modulated by distance traveled and by theta oscillations

description: The visual responses of neurons in the primary visual cortex (V1) are influenced by the animal’s position in the environment. V1 responses encode positions that co-fluctuate with those encoded by place cells in hippocampal area CA1. This correlation may reflect a common influence of non-visual spatial signals on both areas. Place cells in CA1, indeed, do not rely only on vision; their place preference depends on the physical distance traveled and on the phase of the 6-9 Hz theta oscillation. Are V1 responses similarly influenced by these non-visual factors? We recorded V1 and CA1 neurons simultaneously while mice performed a spatial task in a virtual corridor by running on a wheel and licking at a reward location. By changing the gain that couples the wheel movement to the virtual environment, we found that ~20% of V1 neurons were influenced by the physical distance traveled, as were ~40% of CA1 place cells. Moreover, the firing rate of ~24% of V1 neurons was modulated by the phase of theta oscillations recorded in CA1 and the response profiles of ~7% of V1 neurons shifted spatially across the theta cycle, analogous to the phase precession observed in ~37% of CA1 place cells. The influence of theta oscillations on V1 responses was more prominent in putative layer 6. These results reveal that in a familiar environment, sensory processing in primary visual cortex is modulated by the key non-visual signals that influence spatial coding in the hippocampus.
DOI: 10.6084/m9.figshare.21218372.v11
title: Spatial Cooperative Simulation of Land Use-Population-Economy in the Guangdong-Hong Kong-Macao Greater Bay Area, China

description: The data and codes that used in the research "Spatial Cooperative Simulation of Land Use-Population-Economy in the Guangdong-Hong Kong-Macao Greater Bay Area, China" was attahced as follows.The PLUS model was used as one kind of basic simulation models in this study. The software can be found in the "./plus_model" folder. A README file was included in this folder to show how the software can be utilized to implement our approach.The original data of land use, population, and economy can be found in the './original_data' folder and the corresponding driving factor data can be found in the './driving_factor' forlder. All these files was resampled into 1 km grids. These files were used as input data for simulation.The simulation results were included in the './simulated_data' folder. It included the simulation results of land use, population, and economic productions with our proposed approach. With the codes in the './ca_code' folder and the files in the './code_file' folder, the performance of our proposed approach can be evaluated with baseline approaches.The predicted scenarios of land use, population, and economic productions in the year of 2030 were included in the './predicted_data' folder.
DOI: 10.6084/m9.figshare.1373930.v1
title: Processo de armazenamento de um supermercado de pequeno porte em Redenção - PA

description: Os processos logísticos passaram a ser muito importante para as empresas na organização e melhorar seus custos e faturamento. Ao longo do tempo, as organizações deixaram de considerar a Logística apenas como atividade de transporte, mas também gerenciamento, em compras, estocagem e armazenagem. A competitividade do mercado, cada vez maior e o estudo de todo o processo, inclusive a armazenagem dos produtos, podem apresentar alternativas para fazer com que os preços se tornem mais competitivos e atraentes aos clientes. Este artigo traz como tema principal a gestão de armazenagem com enfoque no sistema de controle e localização de estoque de um supermercado de pequeno porte. O objetivo é identificar a importância das ferramentas utilizadas no processo de gestão do mesmo a partir da realidade vivenciada por este Supermercado. Com os seguintes objetivos específicos: Apresentar os aspectos teóricos e históricos da Gestão de Estoques na moderna administração; Identificar se a empresa possui controle de estoque; e discutir acerca dos fatores que se mostram positivos na gestão de armazenagem, identificando o método de controle mais adequado a partir da experiência do Supermercado. O trabalho abrangeu uma pesquisa qualitativa, utilizando especialmente entrevistas, com finalidade de estabelecer o feito à armazenagem da referida empresa.
DOI: 10.6084/m9.figshare.22574449.v1
title: La Almoloya Eigenstrat Data

description: These three files are the Eigenstrat files used in the BREAD-R manuscript, and in Villalba-Mouco, Vanessa, et al. "Kinship practices in the early state El Argar society from Bronze Age Iberia." (https://doi.org/10.1038/s41598-022-25975-9).
DOI: 10.6084/m9.figshare.20099600.v1
title: Corpus

description: Clasificación de páginas de Facebook.
DOI: 10.17632/v2rpgbvhfr
title: PGC-1α Controls Skeletal Stem Cell Fate and Bone-Fat Balance in Osteoporosis and Skeletal Aging by Inducing TAZ

description: Provided here are the raw images and results for relevant data associated with the correction regarding the below manuscript: PGC-1α Controls Skeletal Stem Cell Fate and Bone-Fat Balance in Osteoporosis and Skeletal Aging by Inducing TAZ. Cell Stem Cell. 2018 Aug 2;23(2):193-209.e5. doi: 10.1016/j.stem.2018.06.009.
DOI: 10.17632/45dzm7mgsp
title: Data for: Competitive and Cooperative Effects of Chloride on Palladium(II) Adsorption to Iron (Oxyhydr)oxides: Implications for Mobility During Weathering

description: Data package for manuscript "Competitive and Cooperative Effects of Chloride on Palladium(II) Adsorption to Iron (Oxyhydr)oxides: Implications for Mobility During Weathering" by Emily G. Wright, Xicheng He, Elaine D. Flynn, Daniel E. Giammar, and Jeffrey G. Catalano. The manuscript will be submitted to Geochimica et Cosmochimica Acta. This dataset contains adsorption results from experiments designed to investigate the effect of chloride on Pd(II) adsorption to hematite and 2-line ferrihydrite. This includes lab experiments reacting suspensions of the minerals with various amounts of Pd and chloride at pH 4. We also characterized adsorbed Pd with X-ray absorption fine structure spectroscopy.

The file "Wright2024_PdAds_data.csv" contains the target starting Pd concentration (uM), final aqueous Pd and associated error (in uM), calculated adsorbed Pd and associated error (in umol/m2), aqueous chloride (mM), final pH, mineral concentration/loading (in g/L), and the calculated activity of the Pd++ aqueous species (not calculated for pH 3 samples or mineral free controls). Associated mineral-free controls (mineral loading = 0 g/L) are included; the aqueous Pd error was not calculated. These data appear in Figures 1, 2, 4, 7, S2, S3, S8, and S9 and Tables 1 and S2 in the associated manuscript.

The file "Wright2024_MineralBatches_data.csv" contains the mineral identity and BET specific surface area (in m2/g) for every mineral batch used in experiments. These data appear in Table S1 in the associated manuscript.

The file "Wright2024_XRD_data.csv" contains the powder X-ray diffraction patterns of synthesized batches of hematite and 2-line ferrihydrite. Labels starting with "H" were hematite samples; labels starting with "F" were 2-line ferrihydrite samples. Note that the data were collected under variable conditions that are detailed in the manuscript. These data appear in Figure S1 in the associated manuscript.

The file "Wright 2024_ZetaPotential_data.csv" contains the measured zeta potentials for samples of hematite (batch H4) and ferrihydrite (batch F2) at pH 4 in the presence of varying amounts of sodium chloride. Chloride was not measured in these samples. These data appear in Table 2 in the associated manuscript.

The file "Wright2024_XAFSSamples_data.csv" contains the specific mineral batch, measured final aqueous Pd (in uM), measured final aqueous chloride (in mM), and estimated adsorbed Pd (in umol/m2) of all XAFS samples. These data appear in Tables 3 and S4 in the associated manuscript.

The file "Wright2024_XAFS_data.csv" contains the normalized XAFS spectra of samples of Pd adsorbed to hematite and 2-line ferrihydrite at varying chloride concentrations, as well as reference materials PdO and PdCl2. See "Wright2024_XAFSSamples_data.csv" for a guide to sample names for experimental samples. H05h is equivalent to H0.5h and F05h is equivalent to F0.5h. These data appear in Figures 5, S4, S5, and S6 in the associated manuscript.
DOI: 10.6084/m9.figshare.19662933.v1
title: Rheum nobile genome

description: Rheum nobile genome
DOI: 10.15468/dl.hbg7g5
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pygeum turnerianum F.M.Bailey"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009294-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/vpgrxp346v
title: Sequence data of the ITS region and the matK, rpoC1, trnL-trnF, and trnH-psbA gene regions

description: This dataset includes the ITS region sequences and several gene regions of chloroplast genomic DNA isolated from Boehmeria holosericea collected in Son La province, Vietnam. The ITS region sequence (18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence) is 659 bp in length. The maturase K (matK) gene region is 1219 bp in length; the rpoC1 gene is 523 bp in length; The trnL-trnF region (tRNA-Leu (trnL) gene, partial sequence and intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence) is 840 bp in length; the trnH-psbA region (tRNA-His (trnH) gene, partial sequence; psbA gene, partial cds) is 427 bp in length.
DOI: 10.6084/m9.figshare.24849198.v1
title: Comparison of sleep position monitoring between NaTu sensor and video-validated polysomnography in patients with obstructive sleep apnea

description: This study aimed to evaluate the accuracy of a Bluetooth position monitor called NaTu sensor and its mobile phone application, validated using a video-validated PSG position sensor.
DOI: 10.17632/jwh5xwgpv7
title: SIMLYS version 2.0

description: Abstract SIMLYS is a tool to analyze the results of molecular simulations. It provides functions to investigate the coordinates and in addition it helps to generate and integrate new analysis functions. The version 2.0 of the program contains a number of new modules, as for instance the calculation of accessible surface area, nearest neighbours and correlation functions. The facility to generate a new analysis subroutine was extended and it was made possible to integrate the new module into the presen... Title of program: SIMLYS 2.0 Catalogue Id: ABZD_v2_0 [ACJQ] Nature of problem Simulation techniques are used to generate coordinates. These coordinates can be the result of a molecular dynamics or Monte Carlo simulation or a distance geometry calculation. They are the basis for current trajectory analysis. Versions of this program held in the CPC repository in Mendeley Data ABZD_v1_0; SIMLYS; 10.1016/0010-4655(91)90108-W ABZD_v2_0; SIMLYS 2.0; 10.1016/0010-4655(92)90153-P This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)