cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22688377.v1
title: Untitled Itemassessment of periodontal status in patients with polycystic ovary syndrome using Raman spectroscopy

description: This study attempted to investigate the association between polycystic ovary syndrome (PCOS) and periodontal status from serum and saliva via Raman spectroscopy. 92 patients with PCOS included in the study were diag-nosed as healthy & gingivitis (n = 60) and periodontitis (n = 32) after full-mouth periodontal examinations. Serum and saliva samples were collected for Raman spectroscopy and cytokine detection.Peaks at 1646 cm-1 and 2916 cm-1 in serum samples were significantly lower in the Periodontitis group than the Health & Gingivitis group (P &lt; 0.05). However, peaks at 747 cm-1, 752 cm-1, 1118 cm-1, 1300 cm-1, 1328 cm-1, 1332 cm-1, 1539 cm-1, 1541 cm-1, 1573 cm-1 and 1597 cm-1 in the Periodontitis group were significantly higher than those in the Health & Gingivitis group (P &lt; 0.05). The mean Raman spectra of saliva samples were statistically different (P =0.026) from healthy and perio-dontitis patients, while there was no significant difference in serum samples (P =0.247). Our findings on the significant association between PCOS and periodontitis in terms of Raman spectra of lipid and protein, serous/salivary concentration levels of cytokines and sex hormones highlights the great need for regular periodontal screening and aggressive health care integration in the long-term management of patients with PCOS.
DOI: 10.6084/m9.figshare.28525220.v1
title: Karisola et al <b>Patients with post COVID-19 condition </b>- Count-data and Metadata

description: <b>Abstract</b><b>Background:</b> The mechanisms underlying persistent symptoms after non-severe COVID-19 remain unclear. This study aimed to investigate transcriptomic changes in peripheral blood cells of patients with post-COVID-19 condition (PCC) and assess if distinct clinical subtypes with specific gene signatures could be identified.<b>Methods:</b> The cohort included 111 PCC patients from the SARS-CoV-2 Omicron variant era, with 57 recovered (Recov) and 54 having prolonged symptoms indicative of PCC. The results were compared to 63 healthy controls (Ctrl) without known SARS-CoV-2 infection. Clinical data included patient assessments, laboratory results, comorbidities, and questionnaires on quality of life and functioning. Transcriptomic analysis and cellular deconvolution methods were used on total RNA from peripheral blood mononuclear cells (PBMCs).<b>Results:</b> PCC patients had more comorbidities (mean 1.3) and more frequently (59%) at least one comorbidity than recovered patients (31%) and controls (24%). Overall, past COVID-19 illness or current PCC symptoms caused minimal changes in the blood cell transcriptome, with only 3-6 differentially expressed genes (DEGs) identified across comparisons. However, a subset of male PCC patients exhibited an increased fraction of deconvoluted erythroblasts and significant genome-wide gene expression changes, with 399 DEGs compared to recovered and control males. These genes were enriched in pathways related to heme metabolism and gas exchange in erythrocytes.<b>Conclusions:</b> Persistent symptoms in PCC are multifactorial and not directly linked to peripheral blood cell gene expression changes. However, a subgroup of male PCC patients shows distinct erythrocyte responses that may contribute to long-term symptoms.
DOI: 10.6084/m9.figshare.8227115.v1
title: Performance and Surface Integrity of Wire Electrical Discharge Machining of Thin Ti6al4v Plate Using Coated and Uncoated Wires

description: Wire Electrical Discharge Machining (WEDM) is one of the most important production technologies to manufacture very accurate small components and tools on any electrical conductive material. Titanium and its alloys have been widely used in automobile and aerospace industry as well as in medical engineering field. Small components and tools with complex geometrical shapes are difficult to be produced on titanium alloys by both conventional and nonconventional machining technologies. In this work an experimental investigation on the influences of wire electrode type and electrical variables when WEDM a thin plate of Ti6Al4V alloy has been carried out. Uncoated brass wire and copper wire with a diffused zinc coating were used for the experiments. Interval time, wire run-off speed, discharge duration and dielectric inlet pressure were evaluated in order to achieve adequate process parameter settings. Characteristics of surface integrity were also investigated. The best technological results for all tested WEDM parameters were attained for copper wire with a diffused zinc coating. The recast layer of the samples WEDMachined with the copper wire presented a smaller thickness and more compact than that obtained with uncoated brass wire. For WEDM with both types of wire, the existence of thermal cracks was observed.
DOI: 10.6084/m9.figshare.27291969.v1
title: Data for Screentime among School Children

description: The data set presents the sociodemographic data of school children and correlation with variables
DOI: 10.6084/m9.figshare.10096595.v1
title: Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci

description: The dataset contains genotype (tped and tfam files) and phenotype data GWAS analyses on canine hip dysplasia. See README file for more information.
DOI: 10.6084/m9.figshare.28477058.v1
title: populations.snps.oligo.vcf

description: POPULATION GENETIC STRUCTURE IN TWO CONTRASTING HUMAN-ALTERED ENVIRONMENTS OF<i> </i>YELLOW PYGMY RICE RAT<i> Oligoryzomys flavescens</i><br>
DOI: 10.6084/m9.figshare.3522596.v1
title: Appendix A. Technical details of the model.

description: Technical details of the model.
DOI: 10.6084/m9.figshare.7710815.v1
title: Molecular epidemiology of 16S rRNA methyltransferase in Brazil: RmtG in Klebsiella aerogenes ST93 (CC4)

description: Abstract Aminoglycosides are a class of antibiotics that play a key role in antimicrobial treatment of Multidrug resistant (MDR) Gram-negative bacilli, typically in combination with β-lactams. Ribosomal 16S RNA modification by methyltransferases (e.g. RmtG) is an aminoglycoside resistance mechanism that, along with the occurrence carbapenem-resistant Enterobacteriaceae (CRE), has become a clinical concern. In Brazil, rmtG genes were initially reported in Klebsiella pneumoniae, and monitoring isolates from other species carrying this gene is critical for epidemiological studies and to prevent dissemination. Here we report the presence of rmtG in Klebisella aerogenes D3 and characterize its genetic context in comparison to isolates from other species. Further, we performed a phylogenetic reconstruction of 900 16S rRNA methyltransferases (16S-RMTases) and methyltransferase-related proteins. We show that, in K. aerogenes D3, rmtG co-occurs with sul2, near a transposon with an IS91-like insertion sequence. Resistome analysis revealed the co-production of RmtG and CTX-M-59. Ongoing surveillance of 16S-RMTases is crucial to delay the dissemination of such multiresistant isolates. Our results also highlight the reduction in treatment options for CRE infections, as well as the need of expanding prevention measures of these pathogens worldwide.
DOI: 10.6084/m9.figshare.23620554.v1
title: Self-Reported Myers-Briggs Personality Types on Twitter

description: We collected the data for our analysis by utilising the academic Twitter API (V2). The four-letter acronyms associated with the Myers-Briggs Type Indicator (MBTI) give people a short categorisation of their personality that is easily self-reported on social media in the form of a regular expression. As a result, people are much more likely to self-report their categorical MBTI rather than other personality types. The four letter MBTI acronyms are also unique to the Myers-Briggs questionnaire, meaning they can be easily queried using the Twitter API. This also means these personality types won't be confused with any other acronym or word, reducing the likelihood we incorrectly classify any users. When we initially explored Twitter, we found that some users self-reported their personality type in their biography and other users would self-report their personality types in their tweets. As a result, we formulated two methods for querying and labelling the Myers-Briggs personality type of accounts. We describe the two methods below:<br> <br> Firstly, we used Tweepy's 'search_users' endpoint to obtain the set of users who currently self-report their MBTI in their username or biography. Due to the rate limits associated with this endpoint we were limited to obtaining no more than 1000 users for each unique search query. Secondly, we used the Twitter API's 'full_archive_search' endpoint to obtain the set of users who self-reported their Myers-Briggs personality type in a Tweet since Twitter's creation (March 26, 2006). We searched for users who tweeted any of the three regular expressions, followed by their personality type: 'I am...', 'I am a...' or 'I am an...'. Note that we only searched for self-reports in Tweets and excluded Retweets, Quotes and Replies in our query due to these having a much higher potential of incorrectly labelling an account. Furthermore, we were bound by rate limits of 300 requests per 15-minute window, however there were no hard bounds on the number of tweets or users we could obtain. As a result, we ran this query for each personality type until the search was exhausted.<br> <br> Note that in both cases, the queries were not case-sensitive. In the attached dataset, we provide both the Twitter User IDs and the Myers-Briggs Personality Types associated with the 68,958 users obtained using the two methods discussed above. We provide this dataset prior to any preprocessing steps performed in our paper.
DOI: 10.6084/m9.figshare.21454695.v1
title: PPGL_scRNA_bulk_expression_data

description: Cell Ranger count data for single nuclei RNA seq data from PPGL, and normalised expression data from bulk expression compendium. Please note there is a typographical error in the folder naming for the snRNA count data, folder E326 should be named E236 to match the sample meta-data.
DOI: 10.6084/m9.figshare.26605213.v1
title: Additional file 5 of Single-cell RNA sequencing analysis of the temporomandibular joint condyle in 3 and 4-month-old human embryos

description: Additional file 5.
DOI: 10.6084/m9.figshare.5436202.v1
title: Trinity contigs

description: This repository contains multifasta files of contiguous sequences that were in silico assembled by the Trinity de novo assembler algorithm. The high-quality RNA-Seq reads that were used as input originate from raw NGS read files deposited under the BioProject PRJNA411946. <br><br>The command line script which calls the Trinity software is given below.<br><br>#!/bin/bash#assemble reads using Trinity#--max_memory 15G --CPU 10<br>export PATH=$PATH:/work/kschoonv/bowtie-1.1.2/<br>cd /work/kschoonv/trinityrnaseq-2.2.0/time ./Trinity --seqType fq --left ~/*left.fastq.gz --right ~/*right.fastq.gz --max_memory 12G --CPU 8 --output ks00q005l50_trinity<br>
DOI: 10.6084/m9.figshare.7040060.v3
title: EMRBots: a 10,000-patient database

description: A 10,000-patient database that contains in total 10,000 virtual patients, 36,143 admissions, and 10,726,505 lab observations.
DOI: 10.6084/m9.figshare.9888164.v1
title: IBRAHIM DATA.xlsx

description: This is the raw and permuted data for the paper; effect of financial globalization uncertainty on financial development on selected African countries.
DOI: 10.17632/8dz9nt4hcj
title: Regression-based adjustments to multiples within the framework of a comparative approach to the valuation of companies in the global retail sector

description: Регрессионные корректировки мультипликаторов на индивидуальные различия компаний позволяют повысить точность оценки сравнительным подходом.
Данные представляют собой выборку из 164 компаний и 5 лет наблюдений (2017-2021). Данные получены с использованием надстройки Refinitiv Eikon в Excel, а также с использованием баз данных Дамодарана и Duff & Phepls. В выборке содержатся мультипликаторы и фундаментальные переменные выступающие в роли регрессоров и контрольных переменных.
DOI: 10.6084/m9.figshare.15020178.v1
title: Supporting Table 5

description: Table S5. Percent NMR functional groups, CO<sub>2</sub> production potential, and Redundancy Analysis (RDA) 1 of incubated peatland soils.
DOI: 10.6084/m9.figshare.25706550.v1
title: Supplementary table 1

description: Supplementary table 1 for Improving access to catch-up immunisations for humanitarian arrivals: a qualitative study
DOI: 10.6084/m9.figshare.26928094.v1
title: China’s product-level CO<sub>2 </sub> emissions dataset aligned with national input-output tables from 1997 to 2020

description: Although carbon emission research based on input-output tables (IOTs) has received considerable attention, challenges related to data quality persist due to inconsistencies between the sectoral scopes of energy statistics and IOTs. Specifically, China’s official energy data are reported at the industry level, whereas IOTs are organized by product sectors. To develop valid IOT-based environmental models, it is essential to consistently transform industry-level emissions to product-level emissions. However, most existing studies overlook this necessary transformation, potentially leading to substantial estimation errors. This study addresses this issue by developing a high-quality, product-level emissions dataset for China, grounded in robust product technology identification derived from IOTs. Our new emissions dataset, aligned with Chinese national IOTs, covers 29 to 34 product sectors across 7 benchmark years from 1997 to 2020. It includes data from 4 to 5 energy sectors and provides detailed information on 18 types of fossil fuels, along with emissions estimates based on both IPCC and two China-specific emission factors. This inventory enhances the precision of product-sector emission accounting and can be integrated into IOT-based climate and energy models, serving as a fundamental database for energy and emission analysis.
DOI: 10.17632/7fk6n46gh8
title: The TSC22D, WNK, and NRBP gene families exhibit functional buffering and evolved with Metazoa for cell volume regulation

description: The ability to sense and respond to osmotic fluctuations is critical for the maintenance of cellular integrity. We used gene co-essentiality analysis to identify an unappreciated relationship between TSC22D2, WNK1 and NRBP1 in regulating cell volume homeostasis. Each of these genes have paralogs and are functionally buffered for osmo-sensing and cell volume control. Within seconds of hyperosmotic stress, TSC22D, WNK and NRBP family members physically associate into biomolecular condensates, a process that is dependent on intrinsically disordered regions (IDRs). A close examination of these protein families across metazoans revealed that TSC22D genes evolved alongside a domain in NRBPs that specifically binds to TSC22D proteins, which we have termed NbrT (NRBP binding region with TSC22D), and this co-evolution is accompanied by rapid IDR length expansion in WNK family kinases. Our study reveals that TSC22D, WNK and NRBP genes evolved in metazoans to co-regulate rapid cell volume changes in response to osmolarity. 

The uploaded files include two additional movies for endogenous mScarlet-TSC22D2 upon hyperosmotic stress and AF-M2 predictions for TSC22D paralogs binding with NRBP paralogs.
DOI: 10.6084/m9.figshare.19388249.v2
title: Herg DATA

description: A herg blocker/non-blocker dataset
DOI: 10.6084/m9.figshare.3514697.v1
title: Appendix B. Linear and Mantel correlations between study groups.

description: Linear and Mantel correlations between study groups.
DOI: 10.6084/m9.figshare.5526850.v1
title: The source code of the evolution of social grooming

description: This is a source code for "https://arxiv.org/abs/1707.09110".
DOI: 10.17632/vbdy7myx2d
title: KeeNicitaJIE2022

description: This data set is for 

"Trade Fraud and Non-Tariff Measures" in the Journal of International Economics, 2022
by Hiau Looi Kee and Alessandro Nicita.
DOI: 10.17632/vn9h3pjmc4
title: Raw data for release study, swelling study, FTIR and SEM image for 5-FU loaded alginate microbeads

description: ATR-FTIR spectra of (a) 5-FU, (b) sodium alginate, (c) Tween 80, (d) calcium Percentage swelling index of 5-FU microbeads in HCl (Mean 土 SD, n=3). Percentage swelling index of 5-FU microbeads in phosphate buffer (Mean 土 SD, n=3). Cumulative percentage drug released of 5-FU microbeads in SGF (Mean ± SD, n=3). Cumulative percentage drug release of 5-FU microbeads in SIF (Mean ± SD, n=3).
DOI: 10.6084/m9.figshare.1221673.v1
title: Use of social media by the library: current practices and future opportunities

description: Social media has the potential to facilitate much closer relationships between libraries and their patrons, wherever they are based, and however they choose to access library services and resources. This white paper has been researched and compiled by Taylor & Francis to provide an overview of current practices relating to the use by libraries of social media, from a world-wide perspective, against which individual institutions can benchmark their own activities and be inspired to try new approaches. Read the Taylor & Francis white paper on social media use in libraries here.
DOI: 10.6084/m9.figshare.19131911.v3
title: Figure S11. Unformatted McNemar output file(563,087 SNPs) for 102 BCHF matched case-control pairs, filename: BCHF102pairsHD778FFFSortFiltered.McNemarsResults.csv (468.74)

description: Bovine congestive heart failure (BCHF) has become increasingly prevalent among feedlot cattle in the Western Great Plains of North America with up to 7% mortality in affected herds. BCHF is an untreatable complex condition involving pulmonary hypertension that culminates in right ventricular failure and death. Genes associated with BCHF in feedlot cattle have not been previously identified. Our aim was to search for genomic regions associated with this disease. A retrospective, matched case-control design with 102 clinical BCHF cases and their unaffected penmates was used in a genome-wide association study. Paired nominal data from approximately 560k filtered single nucleotide polymorphisms (SNPs) were analyzed with McNemar’s test. The most significant genome-wide association was in the arrestin domain-containing 3 protein gene (ARRDC3), followed by the nuclear factor IA gene (NFIA, mid-p-values, 1x10E-8 and 2x10E-7, respectively). Animals with homozygous risk alleles at either gene were approximately 8-fold more likely to have BCHF than their matched penmates without those risk alleles (CI95 = 3-17). Animals with homozygous risk alleles at both genes were 28-fold more likely to have BCHF than all others (p-value = 1x10E-7, CI95 = 4-206). A linked missense variant in ARRDC3 (C182Y) represents a potential functional variant since C182 is conserved among all other jawed vertebrate species observed. A DNA test with two markers showed 29% of 273 BCHF cases had homozygous risk alleles in both genes, compared to 2.5% in 198 similar unaffected feedlot cattle. This DNA test may be useful for identifying feedlot animals with the highest risk for BCHF in the environments described here. Although pathogenic roles for ARRDC3 and NFIA variants associated with BCHF are unknown, their discovery facilitates classifying animals by genetic risk and allows cattle producers to make informed decisions for selective breeding and animal health management.
DOI: 10.6084/m9.figshare.28210259.v1
title: CarsonellaGenome_Table2

description: Table 2. The sequence difference between the determined genome and the reference genome (GenBank accession number CP003467).
DOI: 10.17632/v6fgnbjbxk
title: Supplementary data for PCBs and OCPs in surface-mixed layer water and sediment from Lagos lagoon

description: Polychlorinated biphenyls (PCBs) and organochlorine pesticides (OCPs) are persistent environmental contaminants that continue to pose significant risks to human health and our ecological environment. These contaminants are regulated by the Stockholm Convention of Persistent Organic Pollutants (POPs), and are included on the OSPAR List of Chemicals for Priority Action owing to their persistence, propensity to bioaccumulate, and toxicity. Here we provide a baseline dataset on the pollution levels of PCBs and OCPs in intertidal sediment and surface-mixed layer water samples obtained from Lagos lagoon, Nigeria, off the Gulf of Guinea. The dataset is expected to have multiple applications in future scientific investigations, including environmental monitoring as well as estimation and risk assessment of hydrophobic organic micropollutant’s toxicity. The different isomeric diagnostic ratios involving OCPs and PCB congeners allow for characterising the contamination sources in the lagoonal ecosystem. The class distribution of PCB homologue profiles in sediment and water samples allows for establishing dominant homologues for the target congeners. The comprehensive assessment of organic micropollutants in the Lagos lagoon through multi-location sampling and analysis of OCPs and PCBs is considered the most effective monitoring survey. This approach allows for the evaluation of ecological and health concerns associated with exposures at the organism level.
DOI: 10.6084/m9.figshare.16550820.v2
title: Workplace Ergonomics Problems and Solutions: Working from Home

description: Due to the Covid-19 pandemic, in 2020, many employees requested to work from home (WFH). During this WFH period, some employees encountered health issues related to sprains and neck or back pain owing to poor working conditions at home. As the WFH trend may continue over a prolonged period, the actual causes and solutions to ergonomic issues must be addressed to reduce injuries. <b>Purpose:</b> This study aims to identify the ergonomic issues encountered when working from home and suggest several solutions to minimise these issues. <b>Methods:</b> A qualitative ethnographic methodology was adopted. This study included a focus group discussion among experts from the fields of higher education, healthcare, human resource (HR), and ergonomics. The most common ergonomic issues identified were based on diagnoses and observations in previous studies. <b>Results:</b> The panelists agreed on ergonomics issues—comprising the use of unergonomic chairs, incorrect sitting postures, irregular arrangement of key objects, improper reach distances of the laptop/keyboard/mouse, poor desk designs, footrest absence, distortion/noise, poor lighting, and poor work environment. In the long run, WFH ergonomics issues may lead to burnout, carpal tunnel syndrome or other cumulative trauma disorders, high blood pressure, and stress on the cervical spine and neck. The proposed solutions include a complete WFH ergonomics and wellness checklist for employees and employers, webinar sessions on WFH ergonomics, meet-up sessions with ergonomics or HR experts, workspace rentals for co-workers, implementation of the 20-20-20 rule and job-sharing practices, and the involvement of employers or the government in procuring ergonomic equipment for WFH employees. <b>Conclusions:</b> This is a preliminary study and the researchers are exploring the root causes of WFH ergonomics issues and proposed solutions. While previous studies have examined workplace ergonomics, this study only focuses on WFH ergonomic issues and solutions during the ongoing pandemic.
DOI: 10.6084/m9.figshare.23896215.v1
title: Yangtze River Basin Dataset

description: The Yangtze River Basin (YRB) Dataset contains the monthly surface water area, level, and storage changes of 119 lakes and 75 reservoirs in the YRB with each area larger than 10 km<sup>2</sup> during the period from 1990 to 2021.Citations and acknowledgements of the YRB database should be made as follows:Liu, Zheng; Chao, Nengfang; Chen, Gang; Zhang, Guoqing; Wang, Zhengtao; Li, Fupeng; et al. (2023). Yangtze River Basin Dataset. figshare. Dataset. https://doi.org/10.6084/m9.figshare.23896215.v1