cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27757242
title: Supplementary Material for: Dorsal Column Spinal Cord Stimulation Attenuates Brain-Spine Connectivity through Locomotion and Visuospatial-Specific Area Activation in Progressive Freezing of Gait

description: Introduction: Freezing of gait (FOG) is a clinical phenomenon with major life impairments and significant reduction in quality of life for affected patients. FOG is a feature of Parkinson’s Disease and a hallmark of primary progressive freezing of gait (PPGF), currently reclassified as Progressive Supranuclear Palsy-progressive gait freezing (PSP-PGF). The pathophysiology of FOG and particularly PGF, which is a rare degenerative disorder with a progressive natural history of gait decline, are poorly understood. Mechanistically, changes in oscillatory activity and synchronization in frontal cortical regions, the basal ganglia, and the midbrain locomotor region have been reported, indicating that dysrhythmic oscillations and coherence could play a causal role in the pathophysiology of FOG. DBS and SCS have been tested as therapeutic neuromodulation avenues for FOG with mixed outcomes. 

Methods: We analyzed gait and balance in three patients with PSP-PGF who received percutaneous thoracic spinal cord stimulation (SCS) and utilized magnetoencephalography (MEG), electroencephalography (EEG), and electromyography (EMG) to evaluate functional connectivity between the brain and spine. 

Results: Gait and balance did not worsen over a 13-month period. This observation was accompanied by decreased beta-band spectral power in the whole brain and particularly in the basal ganglia. This was accompanied by increased functional connectivity in and between the sensorimotor cortices, basal ganglia, temporal cortex, and cerebellum, and a surge in corticomuscular coherence when SCS was paired with visual cues

Conclusion: Our results suggest synergistic activity between brain and spinal circuits upon SCS for FOG in PGF, which may have implications for future brain-spine interfaces and closed-loop neuromodulation for patients with FOG.
DOI: 10.6084/m9.figshare.27824469
title: Supplementary Material for: Association between serum albumin to creatinine ratio and readmission in elderly heart failure patients: A Retrospective Cohort Study

description: Introduction: This study aimed to investigate the relationship between the serum albumin to serum creatinine ratio (sACR) and readmission in elderly heart failure patients. 
Methods: We conducted a retrospective cohort study using data from the PhysioNet Restricted Health Data database. The exposure variable was sACR and the outcome variable readmission. Multivariate logistic regression and subgroup analyses were performed to assess the independent association between sACR and readmission. Smooth curve fits were applied to examine the non-linear relationship. We employed multiple imputation and E-value sensitivity analyses to assess the robustness of our results.
Results: Our study included 1,725 participants, of whom 40.6% were male, 59.2% were aged 60-79 years, and 40.8% were aged 80 years and older. After adjusting for potential confounders, we found that for each unit increase in sACR, the 28-day readmission rate decreased by 48% (OR = 0.52, 95% CI: 0.29-0.95, P = 0.003). The 28-day readmission rate was significantly higher in the low sACR group (sACR&lt;0.32) than in the high sACR group (sACR&gt;0.51) (OR = 0.47, 95% CI: 0.3-0.76, P=0.002). Similar results were observed for 3-month and 9-month readmission. Subgroup analysis showed no significant interactions. A nonlinear relationship was observed between the sACR and readmission. Sensitivity analyses have confirmed the robustness of our results.
Conclusion: There is a negative association between sACR and readmission in Chinese heart failure patients. Our study may offer novel insights into the management of heart failure readmissions.
DOI: 10.13020/xb7g-yc85
title: Data and R code for analysis of mercury concentration and food web differences in walleye and yellow perch from Minnesota lakes with and without invasive zebra mussels, 2019 - 2021
DOI: 10.13026/8360-t248
title: MIMIC-CXR-JPG - chest radiographs with structured labels

description: The MIMIC Chest X-ray JPG (MIMIC-CXR-JPG) Database v2.0.0 is a large publicly
available dataset of chest radiographs in JPG format with structured labels
derived from free-text radiology reports. The MIMIC-CXR-JPG dataset is wholly
derived from [MIMIC-CXR](https://physionet.org/content/mimic-cxr/), providing
JPG format files derived from the DICOM images and structured labels derived
from the free-text reports. The aim of MIMIC-CXR-JPG is to provide a
convenient processed version of MIMIC-CXR, as well as to provide a standard
reference for data splits and image labels. The dataset contains 377,110 JPG
format images and structured labels derived from the 227,827 free-text
radiology reports associated with these images. The dataset is de-identified
to satisfy the US Health Insurance Portability and Accountability Act of 1996
(HIPAA) Safe Harbor requirements. Protected health information (PHI) has been
removed. The dataset is intended to support a wide body of research in
medicine including image understanding, natural language processing, and
decision support.
DOI: 10.13026/c2jt1q
title: The MIMIC-CXR Database

description: The MIMIC Chest X-ray (MIMIC-CXR) Database v1.0.0 is a large publicly available dataset of chest radiographs with structured labels. The dataset contains 371,920 images corresponding to 224,548 radiographic studies performed at the Beth Israel Deaconess Medical Center in Boston, MA. The dataset is de-identified to satisfy the US Health Insurance Portability and Accountability Act of 1996 (HIPAA) Safe Harbor requirements. Protected health information (PHI) has been removed. The dataset is intended to support a wide body of research in medicine including image understanding, natural language processing, and decision support.
DOI: 10.15139/s3/kkq9ne
title: Dataset for Mixtures Modeling Identifies Chemical Inducers versus Repressors of Toxicity associated with Wildfire Smoke

description: This dataset includes chemistry measures across 12 biomass burn scenarios (serving as lab-based simulations of potential environmental exposures) and mouse cardiopulmonary toxicology measures collected from mice exposed to the same 12 biomass burn scenarios. Files are organized into four separate .csv files, containing either the measured values or the associated metadata, with descriptive labels included throughout.
DOI: 10.15468/dl.26v4j8
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Nannoglottis delavayi (Franch.) Y.Ling & Y.L.Chen)"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027715-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/mh55488db3.1
title: Seasonal Variation of Aerosol Optical Depth over India under Futuristic Climate Scenarios: An Implication of Carbonaceous Aerosols

description: The dataset includes the Aerosol Optical Depth (AOD) from the 2010 GEOS-Chem simulation and two Representative Concentration Pathway (RCP) scenarios: RCP4.5 and RCP8.5, along with the codes used for visualization.
DOI: 10.17632/rf5ff346j2.1
title: Orientale Basin as a Guide for Identifying Lunar Basin Dateable Impact Melt and Assessing Impact Melt Differentiation

description: Vector-format geologic maps for the upcoming (2024) publication of the same name in The Planetary Science Journal.

Maps are provided at 1:1,000,000 and 1:3,000,000 scale.
DOI: 10.17632/w8jtmnszd9.1
title: The Proteomic Landscape of Genome-Wide Genetic Perturbations

description: Functional genomic strategies have become fundamental for annotating gene function and regulatory networks. Here, we combined functional genomics with proteomics by quantifying protein abundances in a genome-scale knock-out library in Saccharomyces cerevisiae, using data-independent acquisition mass spectrometry. We thus created a large, systematic, and quantitative proteomic dataset, with an average of 2,520 proteins quantified across 4,699 yeast gene knock-out strains. The proteome profiles comprise over 100 million peptide quantitations and 9 million protein quantitations. These link deleted genes to proteins and provide a genome-scale resource of molecular phenotypes for 79% of the coding yeast genome.
DOI: 10.21227/w6xz-s898
title: SEN12-FLOOD

description: These last decades, Earth Observation brought quantities of new perspectives from geosciences to human activity monitoring. As more data became available, Artificial Intelligence (AI) techniques led to very successful results for understanding remote sensing data. Moreover, various acquisition techniques such as Synthetic Aperture Radar (SAR) can also be used for problems that could not be tackled only through optical images. This is the case for weather-related disasters such as floods or hurricanes, which are generally associated with large clouds cover. Yet, machine learning on SAR data is still considered challenging due to the lack of available labeled data. This dataset is composed of co-registered optical and SAR images time series for the detection of flood events. It is then to help to close the gap between optical and SAR remote sensing images for the use of machine learning algorithms.
DOI: 10.22002/d1.20132
title: Caltech 10k Web Faces

description: The dataset contains images of people collected from the web by typing common given names into Google Image Search. The coordinates of the eyes, the nose and the center of the mouth for each frontal face are provided in a ground truth file. This information can be used to align and crop the human faces or as a ground truth for a face detection algorithm. The dataset has 10,524 human faces of various resolutions and in different settings, e.g. portrait images, groups of people, etc. Profile faces or very low resolution faces are not labeled.
DOI: 10.24432/c54598
title: Lymphography
DOI: 10.24432/c58885
title: YouTube Spam Collection
DOI: 10.24432/c5c01p
title: Congressional Voting Records
DOI: 10.24432/c5dp5d
title: Maternal Health Risk
DOI: 10.24432/c5wk5q
title: Primary Tumor
DOI: 10.3886/icpsr38251.v1
title: Census of Medical Examiner and Coroner Offices, 2018
title: Version 1

description: The 2018 Census of Medical Examiner and Coroner Offices (CMEC) collects information from every publicly funded medical examiner and coroner office in the United States. Data are collected on administration, staffing, budget, workload, policies, and practices of these offices.
description: The frame of medical examiner and coroner (ME/C) offices was based on the 2004 CMEC and the 2017 National Forensic Laboratory Information Management System (NFLIS) Medical Examiners and Coroners Survey funded by the Drug Enforcement Administration (DEA). ME/C offices received a teleform and link to a web-based form where they could complete information. Offices may have also completed the form via Computer Assisted Telephone Interviewing (CATI). To bolster participation, non-responding offices were offered the opportunity to answer a short version of the form that contained 'critical-items'.
description: There are two weighting adjustments provided in the file. For analysis of items that were critical (found in both the long and short version of the form), users should apply the "WEIGHT_FINAL_CRITICAL" variable. For items on the long form only (non-critical items), users should apply the "WEIGHT_FINAL_LONG" variable.
description: Response Rates: A total of 2,112 ME/C officers were identified during verification efforts and were initially contacted to participate in the study. Of these, 44 were deemed ineligible based on responses to screener questions and 31 offices were compiled with another office's response. Of the remaining 2,037 unique and eligible offices, 1,648 responded for a total response rate of about 81%. Of the respondents, a total of 1,341 (82%) responded to the long version of the survey, and 307 (18%) responded to the critical-items version of the survey.
description: Data come from all ME/C offices
description: Datasets: DS1: Census of Medical Examiner and Coroner Offices, 2018
description: All publicly funded medical examiner and coroner offices. Smallest Geographic Unit: County
description: computer-assisted telephone interview (CATI); mail questionnaire; web-based survey
DOI: 10.48324/dandi.000293/0.220708.1652
title: UHN whole-cell patch-clamp excitability recordings from human cortical neurons

description: Whole-cell patch clamp recordings from surgically resected human cortical tissue.
DOI: 10.48350/185744
title: CODE final product series for the IGS

description: CODE, the Center for Orbit Determination in Europe, is a joint venture of the following four institutions:Astronomical Institute, University of Bern (AIUB), Bern, Switzerland; Federal Office of Topography swisstopo, Wabern, Switzerland; Federal Agency of Cartography and Geodesy (BKG), Frankfurt a. M., Germany; Institut für Astronomische und Physikalische Geodäsie, Technische Universität München (IAPG, TUM), Munich, Germany.
It acts as a global analysis center of the International GNSS Service (IGS). The operational computations are performed at AIUB using the latest development version of the Bernese GNSS Software. In this context a final solution series is generated considering all active GPS and GLONASS satellites. It is published in daily files with a delay of about two weeks.
DOI: 10.5067/aura/mls/data/3516
title: MLS/Aura Level 3 Daily Binned Ozone (O3) Mixing Ratio on Assorted Grids V005
DOI: 10.5067/seahawk-1/hawkeye/l1a/data/1
title: SeaHawk-1 HawkEye Level-1A?? Data, version 1
DOI: 10.5067/seahawk-1/hawkeye/l2/oc/2022.0
title: SeaHawk-1 HawkEye Level-2 Regional Ocean Color (OC) Data, version 2022.0
DOI: 10.5281/zenodo.10089554
title: Changing bird migration patterns have potential to enhance dispersal of alien plants from urban centres

description: In this version I have uploaded the revised code and a list of plant species following reviewer comments in the revision process for the MS.
DOI: 10.5281/zenodo.10650967
title: Twitter dataset about Information Operations in Honduras and UAE

description: Dataset concerning coordinated behaviour in Information Operations in Honduras and United Arab Emirates, consisting of two parts:



malicious tweets, provided by Twitter/X Moderation Research Consortium (TMRC), concerning well-known Information Operations (IOs).

genuine enriching tweets, recovered using Twitter/X search APIs with Academic Elevated Access. Those tweets were published by "genuine" users (i.e. users not into the malicious dataset) and concerned the main topics of the IOs


This dataset allows to explore meaningful patterns of coordination which could distinguish conversations with malicious intent from genuine conversations.



1,2M malicious or genuine tweets about the Honduras IO, shared between 11 September 2019 and 8 January 2020

2,8M malicious or genuine tweets about the UAE IO, shared between 27 January 2019 and 26 May 2019
DOI: 10.5281/zenodo.10909710
title: Data/code for Mlawer et al. 2024 (A more transparent infrared window)

description: Compressed file includes:



LBLRTM input text files for both the SGP and MAO sites (TAPE5_inputs_SGP/ and TAPE5_inputs_MAO/ respectively) -- file names consist of date (YYYYMMDD) and radiosonde time in UTC (HHMMSS)

netCDF data files with TROPoe retrieved aerosol AOD for SGP site (aerosol_data/*.nc), which input data for retrieval were taken from IMPROVE campaign (Downloaded from https://views.cira.colostate.edu//fed/QueryWizard/Default.aspx on 3 March 2024) -- file names consist of aerosol type, date (YYYYMMDD) and time in UTC (HHMMSS)

A .csv file with retrieved aerosol AOD data provided by Connor Flynn (aerosol_data/Flynn_aod_data.csv)

Miscellaneous data (misc_data/):



netCDF of data used as inputs for 3-variable retrieval script (IRwindow_SGP_daveRetrievals2_inputs.cdf)

IDL .sav file of trace gas sensitivity analysis results (IRwindow_SGP_traceGasSensitivityThreshold_0.075thershold.sav)

IDL .sav file of Otsu wavenumber analysis results (IRwindow_wavenumbers_that_passed_spectral_test_0bad1good_750-1290wOzone.sav)

Excel file with three tabs containing other studies' datasets for: self, foreign, and self temperature dependence (supporting_data.xlsx)



Python example script of 3-variable retrieval (IRwindow_3varRetrieval_revised.py)
DOI: 10.5281/zenodo.12756878
title: Enriching productive mutational paths accelerates enzyme evolution

description: Quantum mechanical calculations of the Kemp elimination catalyzed by HG3.R5: cluster model transition structures (full QM) in MOL2 format), and enzyme-substrate complex and transition structures (hybrid QM/MM) in PDB format.
DOI: 10.5281/zenodo.13132418
title: The initial assessment of ionospheric radio occultation data of MSS-1 satellite and its applications in scintillation exploration

description: This dataset contains the GNSS data in the first three months of MSS-1 operation.

The .pdf files are level-2 radio occultation electron density files; .csv are level-2 scintillation files.
DOI: 10.5281/zenodo.13918793
title: Measurement report: The influence of particle number size distribution and hygroscopicity on the microphysical properties of cloud droplets based on  a mountain site field campaign
DOI: 10.5439/1989299
title: aerich1 (b1)

description: The atmospheric emitted radiance interferometer (AERI) is a ground-based instrument that measures the downwelling infrared radiance from the Earth’s atmosphere. The observations have broad spectral content and sufficient spectral resolution to discriminate among gaseous emitters (e.g., carbon dioxide and water vapor) and suspended matter (e.g., aerosols, water droplets, and ice crystals). These upward-looking surface observations can be used to obtain vertical profiles of tropospheric temperature and water vapor, as well as measurements of trace gases (e.g., ozone, carbon monoxide, and methane) and downwelling infrared spectral signatures of clouds and aerosols.
DOI: 10.5439/1989301
title: aeriengineer (b1)

description: The atmospheric emitted radiance interferometer (AERI) is a ground-based instrument that measures the downwelling infrared radiance from the Earth’s atmosphere. The observations have broad spectral content and sufficient spectral resolution to discriminate among gaseous emitters (e.g., carbon dioxide and water vapor) and suspended matter (e.g., aerosols, water droplets, and ice crystals). These upward-looking surface observations can be used to obtain vertical profiles of tropospheric temperature and water vapor, as well as measurements of trace gases (e.g., ozone, carbon monoxide, and methane) and downwelling infrared spectral signatures of clouds and aerosols.
DOI: 10.5439/1989302
title: aerich2 (b1)

description: The atmospheric emitted radiance interferometer (AERI) is a ground-based instrument that measures the downwelling infrared radiance from the Earth’s atmosphere. The observations have broad spectral content and sufficient spectral resolution to discriminate among gaseous emitters (e.g., carbon dioxide and water vapor) and suspended matter (e.g., aerosols, water droplets, and ice crystals). These upward-looking surface observations can be used to obtain vertical profiles of tropospheric temperature and water vapor, as well as measurements of trace gases (e.g., ozone, carbon monoxide, and methane) and downwelling infrared spectral signatures of clouds and aerosols.
DOI: 10.6084/m9.figshare.24501310
title: Datasets and codes - Insect acoustic activity, Do Nascimento et al. 2024

description: Dataset and codes for Do Nascimento et al. 2024.
DOI: 10.6084/m9.figshare.26885734
title: Database for layered intercalation compounds and host layered materials

description: Here, we provide a database of electronic band structures for layered intercalation compounds and layered hosts. Each ".tar.gz" file contains input files for VASP ("POSCAR", "KPOINTS", "KPOINTS-mesh") and an output file ("vasprun.xml") generated by VASP. The "POSCAR" file is the input structure file, the "KPOINTS" file is the line-mode KPOINTS file used for band structure calculations, and the "KPOINTS-mesh" file is the KPOINTS file used for electronic structure calculations before the band structure calculation. The potential files used for each element are listed in "Potentials.xlsx".
We also provide a python script "plot_bands.py" to describe the band structure. See readme_for_python_scripts.txt for instructions.
DOI: 10.6084/m9.figshare.27276018
title: Supplementary Material for: A Nationwide, Population-based Study of Intelligence and Hearing Loss Among 3,104,851 Adolescents

description: Purpose: Epidemiological studies have demonstrated a relationship between general intelligence (GI) in youth and hearing loss (HL). However, no large-scale study assessed the relations of GI in late adolescence with conductive HL and sensorineural HL, stratified by severity. This study examined the connection between HL and GI in late adolescence.

Methods: Cross-sectional study on mandatory pre-military recruitment data recorded during 1967-2019 of patients aged 17-19. We compared GI between sensorineural HL, conductive HL, and those with normal hearing. In addition, we used logistic regression to measure the associations between HL and GI after adjuring for age, sex, education, and socioeconomic status.

Results: Among 3,104,851 adolescents assessed, 20,075 (0.6%) exhibited hearing loss (HL). We categorized general intelligence (GI) into three levels for analysis: low (lowest category), medium, and high (reference category). Adjusted odds ratios (ORs) revealed that sensorineural HL (SNHL) was associated with lower GI levels, with ORs ranging from 1.3 [95% CI 1.4–1.2] for the lowest GI category to 1.1 [95% CI 1.15–0.04] for the medium category. Conductive HL (CHL) also demonstrated significant associations, with ORs from 1.8 [95% CI 1.9–1.6] for the lowest GI level to 1.1 [95% CI 1.2–0.9] for medium. Further analysis revealed a statistically significant, severity-dependent relationship between SNHL and the odds of being in the lowest GI quartile (Q1). Specifically, the odds ratios for SNHL ranged from 1.2 [95% CI 1.1–1.3] to 1.3 [95% CI 1.1–1.5] as severity increased, indicating a strong link between greater SNHL severity and reduced cognitive performance. In contrast, CHL did not show a consistent correlation between its severity and GI outcomes, with an OR of 1.6 [95% CI 1.2–2.3] across severity levels.

Conclusion: We report a strong relationship between HL and GI in late adolescence. Sensorineural HL, but not conductive HL, demonstrated a severity-based decline in GI. The results highlight the value of early, specifically targeted therapies for HL that consider its etiology and degree.
DOI: 10.6084/m9.figshare.27330459
title: Supplementary Material for: The Copenhagen Hidradenitis Suppurativa Cohort: Insights from the first 8 years

description: Medicine