cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25598661.v1
title: <b>Association of ASRGL1 loss and TDP-43 proteinopathy in brain samples of ALS patients</b>

description: FFPE brain cortex samples from 3 pre-selected ALS individuals with very low levels of ASRGL1 and 3 normal controls were stained by immunofluorescence with ASRGL1 and TDP-43 antibodies.
DOI: 10.6084/m9.figshare.5661628.v1
title: Preventive Effect of Lactobacillus Mixture on Inflammation and Cytokines in Lipopolysaccaride-Induced Cystitis Model

description: Severity of bladder inflammation was categorized according to the BII proposed by Jerde et al., with consideration of leukocyte infiltration into lamina propria and interstitial tissue edema. Leukocyte infiltration was assessed in 1mm<sup>2</sup> areas of tissue section. Score was 0 when there was no infiltration, 1 when there were less than 20 leukocytes, 2 with 20-45 leukocytes, and 3 when there were over 45 leukocytes. With regards to edema in the interstitial tissue, a score of 0 was given for no edema; 1 for mild edema, thinner than the mucosa; 2 for moderate edema, thinner than twice the thickness of the mucosa; and 3 for severe edema, thicker than twice the thickness of the mucosa. Scores for leukocyte infiltration and interstitial edema were added and the average scores for three sites (bladder neck, lateral wall, and bladder dome) in each of the bladder specimens were compared.
DOI: 10.17632/f9vx46p3fc
title: IMO-8400 Supplemental Tables

description: Supplemental Tables for "A phase 2 double-blinded, placebo-controlled trial of toll-like receptor 7,8,9 antagonist, IMO-8400, in dermatomyositis"
DOI: 10.17632/tbz84p6vyw
title: Data for: Power system state estimation with extended power formulations

description: Power system state estimation with extended power formulations. Example on 2 systems with the IEEE European Low Voltage Time Series.
DOI: 10.6084/m9.figshare.22269523.v1
title: fores_logging_economic.tif

description: forestry residues from the logging of economic forest.
DOI: 10.6084/m9.figshare.21776357.v1
title: Serum proteomic analysis

description: The proteomics was performed by the serum after removing common high-abundance protein through using a Thermo Fisher's serum High Abundance protein removal reagent (High Select™ Top14 Abundant Protein Depletion Mini Spin Columns, A36370, Thermo fisher, US). The mass spectrometer Thermo Scientific Q Exactive was performed for Label-free quantification detection and data were analyzed by Proteome Discoverer 2.2. The secreted proteins with fold change (FC) ≥1.5 and p-value &lt; 0.05 were considered to be differential proteins. Volcano plots were used to filter the proteins of interest which based on log2(FC) and -log10(P-value) of the secreted proteins
DOI: 10.6084/m9.figshare.25018313.v1
title: Overview of the included articles and search strings

description: This systematic scoping review examines the available body of research on cooperation in the school community to overcome cyberbullying.
DOI: 10.6084/m9.figshare.26343493.v2
title: ECS24-0408_OpenDataFiles_Persad

description: Open Data files for paper entitled "Home range size, habitat selection, and mycophagy of sympatric North American flying squirrels"
DOI: 10.6084/m9.figshare.28068950.v1
title: Extended data

description: The research team conducted a survey to investigate the cause of the ammonia leak at an ice factory in Chonburi Province on May 14, 2024. Images of the breakdown in the ice production equipment are provided in the attached file. The team analyzed the incident using the Fault Tree Analysis (FTA) method and developed Boolean algebra equations. Subsequently, a risk assessment was performed based on the criteria set by the Department of Industrial Works. The findings revealed that the use of non-standard bearings and non-heat-resistant lubricants caused the pump to fail, preventing the delivery of water needed to cool the evaporator condenser unit. Consequently, the ammonia delivery pipe ruptured, resulting in a leak
DOI: 10.6084/m9.figshare.11448513.v1
title: Datasets_Gómez-Gener et al., 2020_NCOMMS

description: Datasets for the paper: "Drought alters the biogeochemistry of boreal stream networks" by Ll. Gómez-Gener. et al., 2020 in Nature Communications (format= csv).<br>Gómez-Gener, L., Lupon, A., Laudon, H. <i>et al.</i> Drought alters the biogeochemistry of boreal stream networks. <i>Nat Commun</i> 11, 1795 (2020). https://doi.org/10.1038/s41467-020-15496-2<br>
DOI: 10.6084/m9.figshare.12369335.v1
title: C8S3 molecular geometry and charge distributions

description: The geometry was optimized at the B3LYP/6-31G(d,p) DFT level.<br>CHELPG charges were computed at the wB97XD/6-31G(d,p) DFT level and constrained to reproduce the dipole moment of either the ground state (<b>gs</b>) or (brightest) excited state (<b>es</b>).<br>For more details, see:A.S. Bondarenko, I. Patmanidis, R. Alessandri, P.C.T. Souza, A.H. de Vries, S.J. Marrink, T.L.C. Jansen, & J. Knoester, <i>Multiscale Modeling of Molecular Structure and Optical Properties of Complex Supramolecular Aggregates</i>, Chemrxiv <b>2020</b>, doi: 10.26434/chemrxiv.12279956<br><br>
DOI: 10.6084/m9.figshare.19610235.v1
title: SR_Data_Stevensetal.csv

description: Alleles at 7 microsatellite loci and geographic locations for DNA samples from swamp rabbits in the Great Trinity Forest.
DOI: 10.21954/ou.rd.21587718.v1
title: Covid Chronicles: The importance of women for peace

description: This plea for recognition of the importance of women in society was written by on of the members of the Swansea Women's Asylum and Refugee support Group in response to the British government's claim to be world leaders in supporting women victims of sexual violence (November 2022)
DOI: 10.6084/m9.figshare.24669363.v1
title: <b>Chromosome-level genome assembly and characterization of the </b><b><i>Calophaca sinica</i></b><b> genome</b>

description: Calophaca sinica is a rare plant endemic to northern China which belongs to the Fabaceae family and possesses rich nutritional value. To support the preservation of the genetic resources of this plant, we have successfully generated a high-quality genome of C. sinica (1.06 Gb).
DOI: 10.6084/m9.figshare.26412295.v3
title: Data for Local nutrient addition drives plant biodiversity losses but not biotic homogenization in global grasslands

description: The files include: 1, raw cover data for control and NPK in year 4 and year 14 after nutrient addition treatment at 72 NutNet sites. 2, raw cover data for sites have five blocks in year 4. 3, sites with geolocation and experimental years used, 4. site drought index, 5. site herbivores. 6, site productivity. 7, site species pool, 8. minimum area and distance among blocks, and generated dataset of 9. effects of nutrient addition on diversity across scales.Methods for estimating cover and species richness, definitions and quantification for site covariates (i.e. site drought index, site herbivores, site productivity, site species pool, and minimum area and distance among blocks) can be found in the method section of the main text. Please access the main text through this link: https://www.biorxiv.org/content/10.1101/2024.03.27.586835v2.<br>
DOI: 10.6084/m9.figshare.1290997.v5
title: Clinicopathological Features, Nodal Metastasis and Outcome in 333 Cases of Penile Squamous Cell Carcinoma

description: Dataset containg clinicopathologic and outcome data from 333 patients with invasive penile squamous cell carcinomas. The complete analysis of this dataset has been published in <em>J Urol</em> 2009;182(2):528-34. <strong>Codebook: </strong><em>ID:</em> Case identification number; <em>Procedure:</em> Surgical procedure used for primary treatment; <em>Grade:</em> Histologic grade; <em>Subtype:</em> Histologic subtype; <em>Glans:</em> Tumor invasion of penile glans; <em>Sulcus:</em> Tumor invasion of penile coronal sulcus; <em>Foreskin:</em> Tumor invasion of foreskin; <em>Level:</em> anatomical level of tumor invasion; <em>Thickness:</em> Tumor thickness in mm; <em>Size:</em> Tumor size in cm; <em>Age:</em> Patient's age in years; <em>Lymphadenectomy:</em> Bilateral inguinal lymphadenectomy; <em>Mets:</em> Metastasis to inguinal lymph nodes; <em>Urethra:</em> Tumor invasion of penile urethra; <em>Vascular:</em> Pesence of vascular invasion in primary tumor; <em>Perineural:</em> Presence of perineural invasion in primary tumor; <em>pT</em>: AJCC pathological stage of primary tumor; <em>Relapse:</em> Presence of tumor relapse during follow-up; <em>Local:</em> Presence of local relapse (v.g., on stump); <em>Regional:</em> Presence of regional relapse (v.g., regional lymph nodes); <em>Systemic:</em> Presence of systemic relapse (v.g., systemic lymph nodes, visceral metastasis); <em>FollowUp:</em> follow-up lengh from primary treatment in months; <em>Outcome:</em> Patient's final outcome at last follow-up; <em>cN:</em> clinical stage of inguinal lymph nodes.
DOI: 10.6084/m9.figshare.28105064.v2
title: test.xlsx

description: 用于测试
DOI: 10.6084/m9.figshare.28569077.v1
title: Asnicar et al. - Exploring cumulative effects of aquaculture chemicals in sediment on adult sea urchins behavioural, immunological, and metabolomic endpoints

description: Water quality raw data collected during the experiment described in "Asnicar et al. - Exploring cumulative effects of aquaculture chemicals in sediment on adult sea urchins behavioural, immunological, and metabolomic endpoints"
DOI: 10.17632/g6dtbv8pwf
title: Figure 6(a) - Annual hourly profile for Vallfogona de Riucorb.

description: The dataset presented here were obtained from the simulation performed to obtained the thermal gains from a rooftop, water-based, flat-box photovoltaic-thermal collector of area 1m^2 at Vallfogona de Riucorb in Tarragona province of Spain. The municipal water supply temperature was determined by using the mathematical model presented by the National Renewable Energy Laboratory (NREL), USA. The data in the file are the annual hourly values of the Time, Ambient Temperature (TMY from PVGIS), Solar Irradiation (TMY from PVGIS), Municipal water supply temperature and the water outlet temperature from the collector.
DOI: 10.6084/m9.figshare.5127496.v1
title: Supplementary Material for: Stage-Specific Effects of Fibroblast Growth Factor 2 on the Differentiation of Dental Pulp Cells

description: Dentinogenesis is a complex and multistep process, which is regulated by various growth factors, including members of the fibroblast growth factor (FGF) family. Both positive and negative effects of FGFs on dentinogenesis have been reported, but the underlying mechanisms of these conflicting results are still unclear. To gain a better insight into the role of FGF2 in dentinogenesis, we used dental pulp cells from various transgenic mice, in which fluorescent protein expression identifies cells at different stages of odontoblast differentiation. Our results showed that the continuous exposure of pulp cells to FGF2 inhibited mineralization and revealed both the stimulatory and inhibitory effects of FGF2 on the expression of markers of dentinogenesis and various transgenes. During the proliferation phase of in vitro growth, FGF2 increased the expression of markers of dentinogenesis and the percentages of dentin matrix protein 1/green fluorescent protein (DMP1-GFP)-positive functional odontoblasts and dentin sialophosphoprotein (DSPP)-Cerulean-positive odontoblasts. Additional exposure to FGF2 during the differentiation/mineralization phase of in vitro growth decreased the extent of mineralization and the expression of markers of dentinogenesis and of the DMP1-GFP and DSPP-Cerulean transgenes. Recovery experiments showed that the inhibitory effects of FGF2 on dentinogenesis were related to the blocking of the differentiation of cells into mature odontoblasts. These observations together showed the stage-specific effects of FGF2 on dentinogenesis by dental pulp cells, and they provide critical information for the development of improved treatments for vital pulp therapy and dentin regeneration.
DOI: 10.6084/m9.figshare.11347247.v1
title: EEG alpha activity in response to Transcutaneous Electrical Nervous Stimulation in healthy young subjects and in the healthy elderly subjects

description: Transcutaneous Electrical Nerve Stimulation (TENS) is used not only in the treatment of pain but also in the examination of sensory functions. With aging, there is decreased sensitivity to somatosensory stimuli. It is essential to examine the effect of TENS application on the sensory functions in the brain by recording the spontaneous EEG activity and the effect of aging on the sensory functions of the brain during the application. The present study aimed to investigate the effect of the application of TENS on the brain’s electrical activity and the effect of aging on the sensory functions of the brain during application of TENS. 15 young and 14 elderly subjects were included in the study. Spontaneous EEG was recorded from 32 channels during TENS application. Power spectrum analysis was performed by Fast Fourier Transform (FFT) in the alpha frequency band (8-13 Hz) for all subjects. The study was approved by The Non-Interventional Clinical Research Ethics Committee of Istanbul Medipol University (Ethical report no: 10840098-604.01.01-E.6805). All participants signed an informed consent form.
DOI: 10.6084/m9.figshare.13115477.v1
title: Additional file 2 of Half-graben inversion tectonics revealed by gravity modeling in the Mikawa Bay Region, Central Japan

description: Additional file 2: Supplementary Table S2. Elevation of the basement surface compiled in this study.
DOI: 10.15151/esrf-es-2064089647
title: XAS investigations of local atomic and bonding properties in liquid Ge under shock compression

description: Elemental Ge is one of the archetypal single component substances extensively studied over the years for exploring the behavior of liquid-liquid transitions. Nevertheless, the low-density semiconducting liquid observed in computer simulations yet to be experimentally observed for non-ambiguous interpretations of the properties of the liquid and as well as the nature of amorphous-amorphous transition w(which is believed to be thermodynamically linked with the transition in the liquid). The stable liquid above the melting line, on the other hand, is expected to be more closely packed (with enhanced metallic bonding) under high pressure. We aim to study the local structure and bonding characteristics of liquid Ge under extended pressure and temperature ranges by means of XAS measurements under shock compression. Expected results will have strong implications for understanding the liquid phases of simple covalent substances (like Si and others) under extreme conditions.
DOI: 10.6084/m9.figshare.14428673.v3
title: Fig. 2e

description: C1R cells expressing MICA*001 or MICA*008 were loaded with PKH67 and added to macrophages in the presence of a range of doses of MICAB1 Fc-engineered or isotype control mAb. The cells were incubated for two hours at 37°C. Macrophage intracellular fluorescence intensity is shown (in relative units) as a function of antibody concentration.Data of one representative donor are shown.
DOI: 10.6084/m9.figshare.19735501.v2
title: Genomic profiling of dioecious Amaranthus species provides novel insights into species relatedness and sex genes

description: This project aims to use comparative genomics via profiling of unassembled short reads to understand the conservation of sex determining genes in dioecious amaranths and also to explore the relationship between the dioecious species. Files shared on Figshare include RepeatExplorer2 annotations, nonredundant TE libraries for repeat analyses in previously assembled genomes of <em>Amaranthus</em> species, raw tree file (.dnd) for Fig. 2 and R codes used in the manuscript plots.
DOI: 10.6084/m9.figshare.27367401.v1
title: Curated cytochrome P450 (CYP) genes in the onion thrips (<i>Thrips tabaci</i> L.)

description: FASTA files (CDSs and proteins) of curated cytochrome P450 (CYP) genes (127 genes) in the onion thrips <i>Thrips tabaci</i> (thelytokous ANO strain) and a GFF format file of predicted gene set (18,966 genes in the ANO strain) including the curated CYP genes.
DOI: 10.17632/rx6vmrww32
title: Borderland Minho industries

description: Information about financial data in industries in the borderlands of the Minho River in Spain
DOI: 10.6084/m9.figshare.21482946.v1
title: Data and Codes for Multivariate Spatial Pattern Analysis

description: The data and codes are supplyments of the paper entitled “Comparison of Moran’s<em> I</em> and Geary’s<em> c</em> in Multivariate Spatial Pattern Analysis” and published in Geographical Analysis.
DOI: 10.6084/m9.figshare.25040192.v2
title: CODEX mouse spleen (clustered)

description: Processed dataset from Goltsev et al., 2018 of CODEX spatial proteomics measurement of 9 spleen sections from healthy mice and mice with systemic lupus erythematosus. Cells are clustered based on their cellular niches (also known as spatial domain or spatial cluster) using CellCharter.
DOI: 10.6084/m9.figshare.17360882.v3
title: Composition and abundance of proteins on the midgut surface of the Asian citrus psyllid, Diaphorina citri

description: Mascot .mgf files and scaffold .sf3 file
DOI: 10.6084/m9.figshare.21355404.v2
title: Dataset

description: The complete raw dataset collected in the study<br> including the participants’ dataset.
DOI: 10.6084/m9.figshare.3826410.v1
title: Yorku.demograp.Sep13-2016.csv

description: The data was collected at York University in Lumbers room 118 on September 13, 2016 at 3:00 pm. The hypothesis was that the brown allele is more dominant in females than males. To collect the data, the researchers went to observe the eye colour of 19 individuals with respect to their gender. The results were recorded in chart format. The procedure took approximately 10 minutes to complete. The two variables were eye colour and gender. The following eye colour that we observed was green, brown, blue, hazel. The results were as follows: 14 females had brown eyes, 4 males had brown eyes, and 1 male had blue eyes. It is evident that 74% of our sample were females with brown eyes. Therefore these results support our hypothesis that brown allele is more dominant in females than in males.
DOI: 10.6084/m9.figshare.27135534.v1
title: Boundaries Survey Analysis

description: Boundary issues in academia are rarely addressed by college or university policy despite the risk of problematic or unethical faculty-student interactions (Owen and Castro 2007). These twelve tips are suggested for the development of an institutional boundary guideline and training program and are based on the outcomes and feedback from an existing institutional boundary training program. For this work, we developed and administered a survey to faculty and staff both before a group discussion session and again after the training session. Based on a review of the literature and the survey responses, these 12 “tips” or best practices to mitigate possible ethical and legal issues that can arise between faculty/staff and students are suggested as guidance for developing an institutional boundary policy.
DOI: 10.6084/m9.figshare.13360499.v1
title: Supplementary Material for: Long-Term Mechanical Ventilation: Recommendations of the Swiss Society of Pulmonology

description: Long-term mechanical ventilation is a well-established treatment for chronic hypercapnic respiratory failure (CHRF). It is aimed at improving CHRF-related symptoms, health-related quality of life, survival, and decreasing hospital admissions. In Switzerland, long-term mechanical ventilation has been increasingly used since the 1980s in hospital and home care settings. Over the years, its application has considerably expanded with accumulating evidence of beneficial effects in a broad range of conditions associated with CHRF. Most frequent indications for long-term mechanical ventilation are chronic obstructive pulmonary disease, obesity hypoventilation syndrome, neuromuscular and chest wall diseases. In the current consensus document, the Special Interest Group of the Swiss Society of Pulmonology reviews the most recent scientific literature on long-term mechanical ventilation and provides recommendations adapted to the particular setting of the Swiss healthcare system with a focus on the practice of non-invasive and invasive home ventilation in adults.
DOI: 10.6084/m9.figshare.22689250.v2
title: Supplementary data to “<b>Complex rupture dynamics of the extremely shallow August 2020 M5.1 Sparta, North Carolina earthquake</b>”

description: This repository contains supplementary data used in the paper titled “Complex rupture dynamics of the extremely shallow August 2020 M5.1 Sparta, North Carolina earthquake”.Files include:<b>supplementary_figure10_3d_earthquakes_plot.html: </b>Interactive 3D plot of earthquakes in our catalog and the best fitting planes to the identified seismicity clusters.<b>supplementary_figure11_3d_faultplanes_plot.html:</b> Interactive 3D plot of best fitting planes to the three identified seismicity cluster and mainshock hypocenter.<b>supplementary_data1_relocated_catalog_sparta.txt: </b>Earthquake relocated catalog for the 2020 Sparta earthquake sequence.<b>supplementary_data2_polarity_focal_mechanism_catalog.txt: </b>First motion polarity derived focal mechanism catalog.<b>readme.txt:</b> file describing contents.<br><b>Format of</b> <b>supplementary_data1_relocated_catalog_sparta.txt: </b>ID YYYY MM dd hh mm ss.sss lat lon depth mag ex ey ez et rmsID: event identifierYYYY: year of earthquake origin timeMM: monthdd: dayhh: hourmm: minutess.sss: secondslat: latitude(degrees)lon: longitude(degrees)depth: depth in kmmag: earthquake magnitudeex: North-South uncertainty estimated from bootstrapping (m)ey: East-West uncertainty estimated from bootstrapping (m)ez: depth uncertainty estimated from bootstrapping (m)et: origin time uncertainty estimated from bootstrapping (ms)rms: root mean square of the differential times<br><b>Format of supplementary_data2_polarity_focal_mechanism_catalog.txt</b>: ID YYYY MM dd hh mm ss.sss mag lat lon depth st dip rk ep eap np misfit qual prob stratio nsp sp_misfID: event identifierYYYY: year of earthquake origin timeMM: monthdd: dayhh: hourmm: minutess.sss: secondsmag: earthquake magnitudelat: latitude(degrees)lon: longitude(degrees)depth: depth in kmst: focal mechanism strikedip: focal mechanism diprk: focal mechanism rakeep: fault plane uncertaintyeap: auxiliary fault plane uncertaintynp: number of P first motion polaritiesmisfit: weighted percent misfit of first motionsqual: focal mechanism quality: A-Fprob: probability mechanism close to solutionstratio: 100*(station distribution ratio)nsp: number of S/P ratiossp_misf: 100*(average log10(S/P) misfit<br><b>Format of</b><b> </b><b>supplementary_data3_detection_catalog_sparta.txt</b>: ID YYYY MM dd hh mm ss.sss lat lon depthID: event identifierYYYY: year of earthquake origin timeMM: monthdd: dayhh: hourmm: minutess.sss: secondslat: latitude(degrees)lon: longitude(degrees)depth: depth in km
DOI: 10.6084/m9.figshare.23692086.v1
title: Reid et al. - Alfalfa weevil data.xlsx

description: Alfalfa weevil, <em>Hypera postica </em>(Coleoptera: Curculionidae) mortality data for various insecticide bioassays.
DOI: 10.6084/m9.figshare.28415192.v1
title: Figshare1 Data on the QT interval

description: Data on the QT interval in rat given doxorubicin
DOI: 10.17632/4w8w9mkfjy
title: Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics

description: From 15 metagenomes of Brazilian cheeses (Araxá, Canastra, Serro, Colonial and Serrano), we recovered 64 metagenomic-assembled genomes (MAGs), including 54 prokaryotes and 10 eukaryotes.
DOI: 10.6084/m9.figshare.14766165.v1
title: Dataset

description: These are the datasets that we have used for building models that recognize Bangla handwritten character.
DOI: 10.17632/w3vrrydbv2
title: IND-MCS - Solution Repository

description: This repository presents the entire set of solutions obtained by the IND-MCS tool for the RTS-WIND and BSS-WIND systems.