cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5ks6jf7t
title: MassIVE MSV000092860 - honey quechers extract gnps analysis
title: Use CEN quechers method to extract 2.5g honey and use PSA to clean up matrix. Using ACN-water-0.01%HCOOH for compound separation and HRMS analysis with Thermo Orbitrap Exploris 120. Data was acquired in Full scan-ddms2 mode. This included a full scan over the m/z range 100- 1000 at full width at half maximum (FWHM) resolution of 60,000, and a data-dependent-MS2 scan at FWHM resolution of 15,000 on the top 4 ions. The ionization was performed in positive ESI with an inlusion list collated from OPPIN website, and to gain more information about fragment ions in the QC sample, we use an Automated Exclusion List Generation workflow, so one QC sample finally gave 3 injections.
DOI: 10.57906/qc36-sw24
title: Schools Daily Contact Testing - England
DOI: 10.6084/m9.figshare.22339360
title: Anodal Contralesional tDCS Enhances CST Excitability Bilaterally in an Adolescent with Hemiparetic Cerebral Palsy: A Brief Report

description: Hemiparetic cerebral palsy (HCP), weakness on one side of the body typically caused by perinatal stroke, is characterized by lifelong motor impairments related to alterations in the corticospinal tract (CST). CST reorganization could be a useful biomarker to guide applications of neuromodulatory interventions, such as transcranial direct current stimulation (tDCS), to improve the effectiveness of rehabilitation therapies. We evaluated an adolescent with HCP and CST reorganization who demonstrated persistent heightened CST excitability in both upper limbs following anodal contralesional tDCS. The results support further investigation of targeted tDCS as an adjuvant therapy to traditional neurorehabilitation for upper limb function.
DOI: 10.6084/m9.figshare.22339360.v1
title: Anodal Contralesional tDCS Enhances CST Excitability Bilaterally in an Adolescent with Hemiparetic Cerebral Palsy: A Brief Report

description: Hemiparetic cerebral palsy (HCP), weakness on one side of the body typically caused by perinatal stroke, is characterized by lifelong motor impairments related to alterations in the corticospinal tract (CST). CST reorganization could be a useful biomarker to guide applications of neuromodulatory interventions, such as transcranial direct current stimulation (tDCS), to improve the effectiveness of rehabilitation therapies. We evaluated an adolescent with HCP and CST reorganization who demonstrated persistent heightened CST excitability in both upper limbs following anodal contralesional tDCS. The results support further investigation of targeted tDCS as an adjuvant therapy to traditional neurorehabilitation for upper limb function.
DOI: 10.5281/zenodo.8338308
title: Additional data supporting "Chemistry-albedo feedbacks offset up to a third of forestation's CO2 removal benefits."

description: Additional data for study "Chemistry-albedo feedbacks offset up to a third of forestation’s CO2 removal benefits". UKESM data is prefixed with "UKESM_" and CESM data starts with "CAM-Chem_". Please see READMEs for additional details on the UKESM and CESM data.
DOI: 10.5281/zenodo.8338307
title: Additional data supporting "Chemistry-albedo feedbacks offset up to a third of forestation's CO2 removal benefits."

description: Additional data for study "Chemistry-albedo feedbacks offset up to a third of forestation’s CO2 removal benefits". UKESM data is prefixed with "UKESM_" and CESM data starts with "CAM-Chem_". Please see READMEs for additional details on the UKESM and CESM data.
DOI: 10.5519/qd.qf6ki3mj
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (691 records)
DOI: 10.5281/zenodo.8344402
title: A3D database: structure-based predictions of protein aggregation for the human proteome

description: A3D database: structure-based predictions of protein aggregation for the human proteome
DOI: 10.5281/zenodo.8344401
title: A3D database: structure-based predictions of protein aggregation for the human proteome

description: A3D database: structure-based predictions of protein aggregation for the human proteome
DOI: 10.57770/mitwlk
title: Low mitochondrial DNA copy number in resected cecum appendix correlates with high severity of acute appendicitis.

description: Acute appendicitis (AA) is one of the most common abdominal emergencies, and appendectomy remains the best treatment of choice in the current clinical practice. Approximately 15–30% patients with clinically suspected acute appendicitis (CSAA) were found to have a normal appendix during appendectomy, which also was known as negative acute appendicitis (NAA). 1 As a result, several clinical parameters, scoring systems or decision trees have been advocated to differentiate true acute appendicitis (TAA) from NAA before appendectomy. 123 However, few studies investigated the underlying biological or immunological pathogenesis of acute appendicitis. The main pathogenesis of acute appendicitis is believed to be obstruction of the lumen caused by bacterial overgrowth and invasion. 4 Luminal mucosa would not only act as a frontier barrier to block the bacterial attack but also trigger innate immunity through the recognition of microbial molecular patterns, secreting chemokine/or cytokine, attracting activated leukocytes, increasing vascular permeability and blood flow to destroy the invaded bacteria. 5 A recent study demonstrated that a decrease in mitochondrial DNA (mtDNA) of the damaged tissue may participate in the triggering of innate immunity during viral infection. 6 Other studies also demonstrated that low mtDNA copy numbers of the leukocytes or peripheral blood mononuclear cells (PBMCs) were associated with high severity of HIV infection, 7 generalized inflammation process 8 or advanced SLE disease activity. 910 The role of mtDNA alteration in the pathogenesis of tissue inflammation or infection deserves further study. 111213 Recently, it was demonstrated that mtDNA molecules could be released from the damaged tissue as a result of reactive oxygen species (ROS)-triggered oxidative damages. 14 Among these oxidative DNA damages, the formation of 8-hydroxyl-2′-deoxyguanosine (8-OHdG), an oxidative damage on guanine (G), is the most common one. 1516 Because mtDNA is much more susceptible to oxidative damage than did the nuclear DNA (nDNA), the amount of 8-OHdG accumulated in mtDNA may be an index to reflect cellular oxidative damage. Generally, the 8-OHdG can be repaired by human 8-oxoguanine DNA glycosylase 1 (hOGG1) through the mechanism of base excision repair during the recovery process. 1516 In this study, we investigated the mtDNA alterations, including the copy number and the degree of oxidative damage, of resected cecum appendix of CSAA patients. The experimental data were further analyzed with the consideration of pathological data and clinical parameters.
DOI: 10.57770/8u5nyl
title: Alterations of oxygen consumption and extracellular acidification rates by glutamine in PBMCs of SLE patients.

description: We evaluated plasma glutamine levels and basal mitochondrial oxygen consumption rate (mOCRB) and basal extracellular acidification rate (ECARB) of peripheral blood mononuclear cells (PBMCs) of systemic lupus erythematous (SLE) patients and healthy controls (HCs). Lower plasma glutamine levels correlated with higher SLE disease activity indexes (p = 0.025). Incubated in DMEM containing 100 mg/dL glucose, SLE-PBMCs displayed lower mOCRB (p = 0.018) but similar ECARB (p = 0.467) to those of HC-PBMCs, and their mOCRB got elevated (p &lt; 0.001) without altering ECARB (p = 0.239) by supplementation with 2 or 4 mM glutamine. We conclude that impaired mitochondrial respiration of SLE-PBMCs could be improved by glutamine under euglycemic condition.
DOI: 10.6084/m9.figshare.22193884
title: Table S5: Classification results for all datasets after mtry optimisation

description: Classification results for all datasets after mtry optimisation
DOI: 10.6084/m9.figshare.22193884.v1
title: Table S5: Classification results for all datasets after mtry optimisation

description: Classification results for all datasets after mtry optimisation
DOI: 10.5281/zenodo.8333789
title: Forestry and Biodiversity monitoring in Lithuania with hyperspectral camera and UAV

description: Acquisition dates: to be updated. Location: Scots pine and mixed forest in Lithuania Camera data: Spectral Range 400 – 1000 nm Spectral sampling 2.68 nm Spectral resolution 5.5 nm Fore lens focal length 15 mm Field of view 38 deg Spectral bands 224 Spatial pixels 1024 Flight altitude: 70 m Spatial resolution: 0.05 m/pixel The dataset consists of pine tree forest hyperspectral imaging data acquired with a UAV on several dates. The data from each UAV flight are given as a separate dataset. Each dataset consists of raw and processed hyperspectral imaging data. The raw data include calibration images of white reference and dark background, raw hyperspectral images, and information on the UAV flight path. TheSPECIM CaliGeoPRO software was used to process raw images into hyperspectral data cubes, which are provided in the format ENVI standard. <strong>Each flight data will come as a separate hyperlink to the storage.</strong> <strong>zip file structure (folders):<br> calibration - holds the radiometric calibration ENVI type file (raster of size 1x1024)<br> capture - raw camera capture data, navigation files, log file.<br> metdata, results - config and empty folder<br> out - holds generated ENVI data cube raster file.</strong> <strong>Download:</strong> https://icaerus-data-1.s3.eu-central-1.amazonaws.com/Uzkresti_miskai_new_fl7_20230510_151005.zip
DOI: 10.5281/zenodo.8333788
title: Forestry and Biodiversity monitoring in Lithuania with hyperspectral camera and UAV

description: Acquisition dates: to be updated. Location: Scots pine and mixed forest in Lithuania Camera data: Spectral Range 400 – 1000 nm Spectral sampling 2.68 nm Spectral resolution 5.5 nm Fore lens focal length 15 mm Field of view 38 deg Spectral bands 224 Spatial pixels 1024 Flight altitude: 70 m Spatial resolution: 0.05 m/pixel The dataset consists of pine tree forest hyperspectral imaging data acquired with a UAV on several dates. The data from each UAV flight are given as a separate dataset. Each dataset consists of raw and processed hyperspectral imaging data. The raw data include calibration images of white reference and dark background, raw hyperspectral images, and information on the UAV flight path. TheSPECIM CaliGeoPRO software was used to process raw images into hyperspectral data cubes, which are provided in the format ENVI standard. <strong>Each flight data will come as a separate hyperlink to the storage.</strong> <strong>zip file structure (folders):<br> calibration - holds the radiometric calibration ENVI type file (raster of size 1x1024)<br> capture - raw camera capture data, navigation files, log file.<br> metdata, results - config and empty folder<br> out - holds generated ENVI data cube raster file.</strong> <strong>Download:</strong> https://icaerus-data-1.s3.eu-central-1.amazonaws.com/Uzkresti_miskai_new_fl7_20230510_151005.zip
DOI: 10.25403/upresearchdata.24106068
title: Determination of food insecurity levels in Limpopo Province

description: As a measure of food security, the aim of the study was to investigate the access of households with livestock to essential nutrients for their families. During the month of August 2011, qualitative and quantitative data were collected from 600 families spanning five districts in the province of Limpopo. There was a compilation of data on the makeup of the household, dietary intake, cultivation of food, household income, and resource accessibility. To achieve the objectives of this study, accurate procedure of determining food security and destitution were obtained from this dataset and analysed.
DOI: 10.25403/upresearchdata.24106068.v1
title: Determination of food insecurity levels in Limpopo Province

description: As a measure of food security, the aim of the study was to investigate the access of households with livestock to essential nutrients for their families. During the month of August 2011, qualitative and quantitative data were collected from 600 families spanning five districts in the province of Limpopo. There was a compilation of data on the makeup of the household, dietary intake, cultivation of food, household income, and resource accessibility. To achieve the objectives of this study, accurate procedure of determining food security and destitution were obtained from this dataset and analysed.
DOI: 10.5285/b91ea195-fd3d-4171-bae4-198c46575c16
title: Arctic Melt Pond Fraction and Binary Classification, 2000-2020

description: This dataset provides daily, 8-day, and monthly Arctic melt pond fractions and binary classification, from 2000-06-01 to 2020-08-31. Level-2 MODerate resolution Imaging Spectroradiometer (MODIS) top-of-the-atmosphere (TOA) reflectances for bands 1-4 were obtained, to which two machine learning algorithms such as multi-layer neural networks and logistic regression were applied to map melt pond fraction and binary melt pond/ice classification. This work was funded by NERC standard grant NE/R017123/1.
description: Level-2 MODIS top-of-the-atmosphere (TOA) reflectances for bands 1-5 were used for the melt pond fraction and binary classification. Additionally, MODIS bands 5, 13, 16 and 19 were used to remove cloud shadows. The MOD35 data product was also used for cloud masking and MOD29 ice surface temperature product was used to flag refrozen melt ponds. Two machine learning algorithms were applied to the TOA band reflectances to map melt pond fraction and binary melt pond/ice/ocean classification. These included a Multi-Neural Network (MNN) and Multinomial Logistic Regression (MLR). Results were validated against high-resolution WorldView imagery, ship observations and other high resolution unclassified spy satellite data.
description: Matlab R2019a ENVI 5.5 ArcGIS 10.0 Python 3
description: The accuracy assessment for melt pond binary classification and fraction is further evaluated against WV imagery, showing mean overall accuracy (85.5%), average mean difference (0.09), and mean RMSE (0.18). In addition to cross-validation with WV, retrieved melt pond data are validated against melt pond fractions from satellite and ship-based observations, showing mean correlation coefficients, root-mean-square-error (RMSE) and mean differences of 0.41, 0.12, and 0.05, respectively.
DOI: 10.5281/zenodo.8343977
title: RNA seq data for mouse tibia defect

description: Mechanical stimulation promotes periostin in macrophages via transforming growth factor-β (TGF-β) and phosphorylating Smad2/3, while inducing M2 polarization.
DOI: 10.5281/zenodo.8343976
title: RNA seq data for mouse tibia defect

description: Mechanical stimulation promotes periostin in macrophages via transforming growth factor-β (TGF-β) and phosphorylating Smad2/3, while inducing M2 polarization.
DOI: 10.6084/m9.figshare.24138357
title: Comparison of the efficacies of TINAVI robot-assisted surgery and conventional open surgery for Levine-Edward type IIA (postreduction) hangman fractures

description: The objective was to compare the clinical efficacy of percutaneous pedicle screw internal fixation with the aid of the TINAVI orthopaedic surgery robot with that of traditional open surgery for Levine-Edward type IIA (postreduction) hangman fractures and to evaluate the safety and efficacy of the TINAVI robot-assisted orthopaedic surgery procedure.
DOI: 10.6084/m9.figshare.24138357.v1
title: Comparison of the efficacies of TINAVI robot-assisted surgery and conventional open surgery for Levine-Edward type IIA (postreduction) hangman fractures

description: The objective was to compare the clinical efficacy of percutaneous pedicle screw internal fixation with the aid of the TINAVI orthopaedic surgery robot with that of traditional open surgery for Levine-Edward type IIA (postreduction) hangman fractures and to evaluate the safety and efficacy of the TINAVI robot-assisted orthopaedic surgery procedure.
DOI: 10.5281/zenodo.7550387
title: Elastic nucleon-pion scattering at $m_{\pi} = 200~{\rm MeV}$ from lattice QCD

description: This archive contains bootstrap samples of single-hadron masses and finite-volume nucleon-pion energies used in https://arxiv.org/pdf/2208.03867. Each (ASCII) file contains 802 lines in the following format: 801 1 0 0 1 #Header line.<br> 0 &lt;mean&gt; #the energy evaluated on the mean<br> 0 &lt;bsample 1&gt; #first boostrap sample<br> ....<br> 0 &lt;bsample 800&gt; #800th boostrap sample The directory structure and file names are as follows. single_hadrons/m_&lt;hadron&gt;_smpls.dat where &lt;hadron&gt; = pion or nucleon, contains the single-hadron masses. The I=1/2 and I=3/2 spectra are located in the directories 'isodoublet_nonstrange' and 'isoquartet_nonstrange_fermionic', respectively. Each subdirectory contains a single irrep and is denoted "dsq&lt;mom&gt;_&lt;irrep&gt;" and contains files level_&lt;n&gt;_ecm_over_m_smpls.dat for each level. The energies given in these files are normailzed by mpi and are in the center-of-momentum frame. <br>
DOI: 10.5281/zenodo.7550386
title: Elastic nucleon-pion scattering at $m_{\pi} = 200~{\rm MeV}$ from lattice QCD

description: This archive contains bootstrap samples of single-hadron masses and finite-volume nucleon-pion energies used in https://arxiv.org/pdf/2208.03867. Each (ASCII) file contains 802 lines in the following format: 801 1 0 0 1 #Header line.<br> 0 &lt;mean&gt; #the energy evaluated on the mean<br> 0 &lt;bsample 1&gt; #first boostrap sample<br> ....<br> 0 &lt;bsample 800&gt; #800th boostrap sample The directory structure and file names are as follows. single_hadrons/m_&lt;hadron&gt;_smpls.dat where &lt;hadron&gt; = pion or nucleon, contains the single-hadron masses. The I=1/2 and I=3/2 spectra are located in the directories 'isodoublet_nonstrange' and 'isoquartet_nonstrange_fermionic', respectively. Each subdirectory contains a single irrep and is denoted "dsq&lt;mom&gt;_&lt;irrep&gt;" and contains files level_&lt;n&gt;_ecm_over_m_smpls.dat for each level. The energies given in these files are normailzed by mpi and are in the center-of-momentum frame. <br>
DOI: 10.6084/m9.figshare.24138428
title: Data - raw_data_physical_model from Three-dimensional kinematics of leaf-cutter ant mandibles: not all dicondylic joints are simple hinges

description: Insects use their mandibles for a variety of tasks, including cutting and material transport, defence, building nests, caring for brood and competing for mates. Despite this functional diversity, mandible motion is thought to be constrained to rotation about a single fixed axis in the majority of extant species. Here, we conduct a direct quantitative test of this ‘hinge joint hypothesis’ in a species that uses its mandibles for a wide range of tasks: <i>Atta vollenweideri</i> leaf-cutter ants. Mandible movements from live restrained ants were reconstructed in three-dimensional using a multi-camera rig. Rigid body kinematic analyses revealed strong evidence that mandible movement occupies a kinematic space which requires more than one rotational degree of freedom: at large opening angles, mandible motion is dominated by yaw. But at small opening angles, mandibles yaw and pitch. The combination of yaw and pitch allows mandibles to ‘criss-cross’: either mandible can be on top when mandibles are closed. We observed criss-crossing in freely cutting ants, suggesting that it is functionally important. Combined with recent reports on diversity of joint articulations in other insects, our results show that insect mandible kinematics are more diverse than traditionally assumed, and thus worthy of further detailed investigation.This article is part of the theme issue ‘Food processing and nutrition assimilation in animals’.
DOI: 10.6084/m9.figshare.24138428.v1
title: Data - raw_data_physical_model from Three-dimensional kinematics of leaf-cutter ant mandibles: not all dicondylic joints are simple hinges

description: Insects use their mandibles for a variety of tasks, including cutting and material transport, defence, building nests, caring for brood and competing for mates. Despite this functional diversity, mandible motion is thought to be constrained to rotation about a single fixed axis in the majority of extant species. Here, we conduct a direct quantitative test of this ‘hinge joint hypothesis’ in a species that uses its mandibles for a wide range of tasks: <i>Atta vollenweideri</i> leaf-cutter ants. Mandible movements from live restrained ants were reconstructed in three-dimensional using a multi-camera rig. Rigid body kinematic analyses revealed strong evidence that mandible movement occupies a kinematic space which requires more than one rotational degree of freedom: at large opening angles, mandible motion is dominated by yaw. But at small opening angles, mandibles yaw and pitch. The combination of yaw and pitch allows mandibles to ‘criss-cross’: either mandible can be on top when mandibles are closed. We observed criss-crossing in freely cutting ants, suggesting that it is functionally important. Combined with recent reports on diversity of joint articulations in other insects, our results show that insect mandible kinematics are more diverse than traditionally assumed, and thus worthy of further detailed investigation.This article is part of the theme issue ‘Food processing and nutrition assimilation in animals’.
DOI: 10.34740/kaggle/dsv/6472244
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.6084/m9.figshare.24137553
title: seq_patches_18252_from_1wsi.npy

description: Numpy array dataset of sequentially sampled 18252 patches sequentially sampled from a whole slide image with 128x128 pixels.
DOI: 10.6084/m9.figshare.24137553.v1
title: seq_patches_18252_from_1wsi.npy

description: Numpy array dataset of sequentially sampled 18252 patches sequentially sampled from a whole slide image with 128x128 pixels.
DOI: 10.5281/zenodo.8344292
title: IGBMC ICube LW4-1 : Image and annotations

description: FIB-SEM cellular (HeLa cells) image with 6 classes segmentation : Mitochondrion (8 x 40 slices) Endoplasmic reticulum (2 x 40 slices) Nucleus (5 x 40 slices) Cell membrane / Cell filled (8 x 40 slices) Endosome (8 x 40 slices) Golgi apparatus (1 x 40 slices) Collection date : 05/04/2017<br> Instrument : Auriga 60-46-16<br> Fixation : High pressure frozen, freeze-substituted.<br> Embedding : Lowicryl<br> Coloration : Osmium / Uranyl Acetate<br> <br> Number of slices : 600<br> Pixel spacing x/y (nm) : 7.5 Image acquisition : Fabien Alpy<br> Manual segmentation : Mallouh Véronique
DOI: 10.5281/zenodo.8344291
title: IGBMC ICube LW4-1 : Image and annotations

description: FIB-SEM cellular (HeLa cells) image with 6 classes segmentation : Mitochondrion (8 x 40 slices) Endoplasmic reticulum (2 x 40 slices) Nucleus (5 x 40 slices) Cell membrane / Cell filled (8 x 40 slices) Endosome (8 x 40 slices) Golgi apparatus (1 x 40 slices) Collection date : 05/04/2017<br> Instrument : Auriga 60-46-16<br> Fixation : High pressure frozen, freeze-substituted.<br> Embedding : Lowicryl<br> Coloration : Osmium / Uranyl Acetate<br> <br> Number of slices : 600<br> Pixel spacing x/y (nm) : 7.5 Image acquisition : Fabien Alpy<br> Manual segmentation : Mallouh Véronique
DOI: 10.6084/m9.figshare.24138473.v1
title: Supplemental Table 1 from Characterizing tongue deformations during mastication using changes in planar components of three-dimensional angles

description: Cycle level data for deformations in the transverse and sagittal planes at maximum gape, minimum gape, maximum tongue protraction, and maximum tongue retraction
DOI: 10.6084/m9.figshare.24138473
title: Supplemental Table 1 from Characterizing tongue deformations during mastication using changes in planar components of three-dimensional angles

description: Cycle level data for deformations in the transverse and sagittal planes at maximum gape, minimum gape, maximum tongue protraction, and maximum tongue retraction
DOI: 10.5281/zenodo.8344660
title: BORBA, DA dataset

description: Paper dataset.
DOI: 10.5281/zenodo.8344659
title: BORBA, DA dataset

description: Paper dataset.
DOI: 10.57768/rn8p-qd14
title: Próba nr 88
title: Próba nr 88

description: iiiii
description: iiii