cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10630134
title: eLTER Compiled Survey Overview Information - data inventory

description: This document was created by eLTER PLUS WP8.2 to consolidate the survey information received from site managers (on what data was collected and available at each site; document 'eLTER_Survey_20200915_1700.xlsx') as well as whether the data was delivered to the eLTER PLUS project (stored in the eLTER PLUS B2Drop). This document also includes additionial information about each site, the contact information, coordinates etc.

The 'Key' sheeet provides a description of each column in the 'Information' sheet and the source of the information (e.g. the document's name, from the DEIMS json file). It is also included the level the information is at (i.e. general site information = 'site level' or information tied to a specific measured variable = 'variable level'). It should be noted that the habitat information was retreived from DEIMS json file and does not necessarily reflect the habitat where variables were measured nor does the order indicate dominant habitats at the site. It should also be noted that 'update frequency', referring to the update frency of the data, was interpreted differently by site managers responding to the survey, and thus is not necessarily consistant with the delivered data.

The columns that start with 'SITE_' indicate the variable name, unit, etc. as found in the delivered dataframes, which is not always consistant with the variable name, unit, etc. indicated in the survey information. This was only done for biogeochemical data and only for certain sites and variables were targeted.

 

Funding: eLTER PLUS - European long-term ecosystem, critical zone and socio-ecological systems research infrastructure PLUS

This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 871128 (eLTER PLUS).
DOI: 10.6084/m9.figshare.22604380.v1
title: Additional file 3 of Establishment and validation of a predictive model of preeclampsia based on transcriptional signatures of 43 genes in decidua basalis and peripheral blood

description: Additional file 3: Data 2. MEblue Go terms
DOI: 10.48328/tudatalib-1347
title: Chemical analysis and data logging of groundwater quality from three monitoring wells at the SKEWS Site, Campus Lichtwiese of TU Darmstadt

description: For the construction of the seasonal crystalline borehole thermal energy storage (SKEWS-project) at the Lichtwiese campus of the Technical University (TU) of Darmstadt, three groundwater monitoring wells were installed for monitoring purposes from 15.02. to 18.02.2022. These wells with depths of 24.5 m (GWM 1 and 2N) and 36.5 m (GWM 3) have filter sections of 6 m to 22 m (GWM 1 and 2N) and 8 m to 32 m (GWM 3) in the upper aquifer (Figure 1 and Table 1). The height of the upper edge of the pipe (Pegeloberkante = POK) changed since the final completion under the surface took place on the 20th of July 2022. The wells are positioned at a distance of approx. 20 m to 40 m in a triangular arrangement. The groundwater flow is south to north. The aquifer is likely fracture based in highly weathered basaltic rock with an estimated hydraulic conductivity of about 10-5 m/s to 10-6 m/s. Manual groundwater samples were taken twice a week. Automatic data loggers were installed for continuous hourly measurements. The measured depth of the logger in the water must be converted into absolute height values by calibrating it to the measurements on site. Missing readings from the data loggers related to low battery levels. Outliers resulting from battery changes and temporary extractions of the loggers from the well were removed. From 09.06. to 25.06.2022, the approx. 40 m deep pipes of the 4 geothermal borehole heat exchanger (BHE) were installed using the rotary method. The deep drilling of the three geothermal BHEs up to 750 m depth took place from 18.07. to 25.10.22, using both pneumatic and hydraulic down-the-hole hammers, as well as the rotary method with a clay-based drilling fluid. Significant water inflows below 40 m were observed with the pneumatic hammer, as well as water losses from the upper aquifer with the hydraulic hammer. Due to borehole instabilities and fractured zones, intermediate cementations and the use of clay-freshwater drilling fluid were necessary. Consequently, groundwater fluctuations and changes in the chemical composition were to be expected during this period. Short-term pumping tests were conducted on 07.06. - 08.06.22, 15.06. – 22.06.22, and on 08.06.23. Furthermore, from 05.10. to 17.11.2023, a Geothermal Response Test (GRT) was conducted on BHE 2 with a heating power of approx. 120 kW. The dataset consists of tables and figures for manual and automatic sampling. Furthermore, the well configuration and location are included in a separate file.
DOI: 10.6084/m9.figshare.22603859.v1
title: Additional file 1 of Morphine suppresses the immune function of lung cancer by up-regulating MAEL expression

description: Additional file 1.
DOI: 10.5281/zenodo.10598647
title: Variational quantum simulation of U(1) lattice gauge theories with qudit systems

description: This is the dataset, which was used for generating the figures with results in our work (to be published in PRResearch)






https://doi.org/10.48550/arXiv.2307.15173

 






The data is generated by a simulation protocol implemented in Python. 

For the imaginary time evolution figures, the data contains the values of the fidelity with respect to the true ground state and the energy of the variational state as a function of the time for N = 1,2 and 3 layers of the variational circuit. 

For the real time evolution figures, the data contains the values of the fidelity with respect to the exactly time-evolved state, the fermion numbers, calculated in the variational state, as a function of time, and the bipartite entropy as a function of time.
DOI: 10.5281/zenodo.10598648
title: Variational quantum simulation of U(1) lattice gauge theories with qudit systems

description: This is the dataset, which was used for generating the figures with results in our work (to be published in PRResearch)






https://doi.org/10.48550/arXiv.2307.15173

 






The data is generated by a simulation protocol implemented in Python. 

For the imaginary time evolution figures, the data contains the values of the fidelity with respect to the true ground state and the energy of the variational state as a function of the time for N = 1,2 and 3 layers of the variational circuit. 

For the real time evolution figures, the data contains the values of the fidelity with respect to the exactly time-evolved state, the fermion numbers, calculated in the variational state, as a function of time, and the bipartite entropy as a function of time.
DOI: 10.6084/m9.figshare.22605652.v1
title: Additional file 3 of Relationship of sleep duration with incident cardiovascular outcomes: a prospective study of 33,883 adults in a general population

description: Additional file 3: Supplementary Table 2. Hazard ratios (95% CI) of incident CVD according to sleep duration and age groups in all participants (N = 33,883).
DOI: 10.5281/zenodo.10630330
title: gobiomorphus_australis_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.10630331
title: gobiomorphus_australis_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.6084/m9.figshare.13167243
title: Additional file 9 of Transcriptomic and functional analyses reveal an antiviral role of autophagy during pepper mild mottle virus infection

description: Additional file 9: Table S6. Primers used for PMMoV detection and vector construction.
DOI: 10.5281/zenodo.10630292
title: Forcipiger_flavissimus_BGI_061_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.10630293
title: Forcipiger_flavissimus_BGI_061_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.10630318
title: fibramia_lateralis_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.10630319
title: fibramia_lateralis_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.6084/m9.figshare.13167210.v1
title: Additional file 10 of Transcriptomic and functional analyses reveal an antiviral role of autophagy during pepper mild mottle virus infection

description: Additional file 10: Table S7. Primers used for RT-qPCR in this study.
DOI: 10.6084/m9.figshare.13167225.v1
title: Additional file 3 of Transcriptomic and functional analyses reveal an antiviral role of autophagy during pepper mild mottle virus infection

description: Additional file 3: Table S3. KEGG annotation of DEGs.
DOI: 10.6084/m9.figshare.7927580
title: Additional file 1: of Conditioned stimulus presentations alter anxiety level in fear-conditioned mice

description: Other parameters on EPM test. Table S1. Other parameters in EPM during CS presentation. Table S2. Other parameters in EPM about the effect of diazepam on innate anxiety of fear-conditioned mice. Table S3. Other parameters in EPM in diazepam group on anxiety measurements during CS presentation. Table S4. Other parameters in EPM in saline group on anxiety measurements during CS presentation. Table S5. Other parameters in EPM compare saline with diazepam on anxiety measurements during CS presentation. *, p &lt; 0.05; **, p &lt; 0.01; ***, p &lt; 0.001. Data were analyzed by One-way or Two-way RM ANOVA with Bonferroni post-test. (XLS 31 kb)
DOI: 10.6084/m9.figshare.22606321.v1
title: Additional file 15 of Iris lactea var. chinensis plant drought tolerance depends on the response of proline metabolism, transcription factors, transporters and the ROS-scavenging system

description: Additional file 15.
DOI: 10.6084/m9.figshare.22605649
title: Additional file 2 of Relationship of sleep duration with incident cardiovascular outcomes: a prospective study of 33,883 adults in a general population

description: Additional file 2: Supplementary Table 1. Hazard ratios (95% CI) of incident CVD in male and female participants by sleep duration.
DOI: 10.25345/c5hx1623p
title: MassIVE MSV000094030 - 6 Ocotea sp. dataset analyzed in DIA mode (ESI positive and negative)
title: This dataset consists of 6 Ocotea plant species analyzed in negative and positive modes, with data-independent acquisition (MSe), in a Waters Xevo instrument. The available data were converted in .mzML format using the Waters2mzML software, available on Github. Detailed information about data acquisition: For MSe, data acquisition was performed in a UPLC system coupled to an ESI source and a QTOF XevoTM instrument (Waters Corp., Milford, MA, USA). Chromatographic separation was achieved using a C18 column (100 x 2.1 mm and 1.8 microm particle diameter, ACQUITY UPLC HSS T3), and a mobile phase gradient with a flow rate of 0.5 mL/min, composed of ACN/water, both phases acidified with 0.1% formic acid. The runtime was 10 minutes, with an injected sample volume of 5 microL, and the oven and shelf temperatures 40 C and 10 C, respectively. The chromatographic gradient began with an initial composition of 1 percent ACN and, was followed by a transition to 15 percent ACN at 0.1 min. Further changes in solvent composition occurred at 7.5 min (80 percent ACN), 8.5 min (99 percent ACN), and 8.6 min (1 percent ACN) until 10 min. The mass spectrometer was operated in MSe acquisition mode with alternating high and low-energy scans, for positive and negative ionization modes. The ionization energy was set at 3 eV for low-energy scans and 25-40 eV for high-energy scans. ESI-MS at a resolution up to 40.000 with a full mass scan range set from 50 to 1000 m/z for functions 1 and 2 was applied. Instrument parameters, including cone voltage (40 V), capillary voltage (3.0 kV), cone gas flow (30 L/h), auxiliary gas flow rate (10 L/h); desolvation temperature (300 C), source temperature (120 C), and desolvation gas flow (600 L/h), were carefully optimized. High-purity nitrogen was employed for desolvation, collision, and cone gas. To ensure accuracy and reproducibility, a solution of leucine-encephalin was used as a lock mass with m/z 554.2622 (ESI-) and m/z 556.2768 (ESI+) for identification. MS data were continuously collected, and lock spray calibration was performed every 10 seconds.
DOI: 10.6084/m9.figshare.10032815
title: HIF-1α promotes the keloid development through the activation of TGF-β/Smad and TLR4/MyD88/NF-κB pathways

description: A keloid is defined as an overgrowth of the dense fibrous tissues that form around a wound. Since they destroy the vascular network, keloid tissues often exhibit anoxic conditions. Hypoxia-inducible factor-1α (HIF-1α) is a core factor that mediates hypoxia stress responses and regulates the hypoxic cellular and biological behaviors. In this study, we found that the expression level of HIF-1α in keloid tissue was significantly higher than that in the normal skin tissue. Hypoxia-induced HIF-1α expression significantly inhibited cellular apoptosis and promoted cellular proliferation in keloid fibroblasts but not in normal fibroblasts. Specifically, HIF-1α activated the TGF-β/Smad and TLR4/MyD88/NF-κB pathways, and the interaction of these two pathways may promote the development of keloids. Moreover, <i>in vivo</i> experiments showed that the inhibition of HIF-1α significantly reduced the growth of keloids.
DOI: 10.6084/m9.figshare.10032815.v1
title: HIF-1α promotes the keloid development through the activation of TGF-β/Smad and TLR4/MyD88/NF-κB pathways

description: A keloid is defined as an overgrowth of the dense fibrous tissues that form around a wound. Since they destroy the vascular network, keloid tissues often exhibit anoxic conditions. Hypoxia-inducible factor-1α (HIF-1α) is a core factor that mediates hypoxia stress responses and regulates the hypoxic cellular and biological behaviors. In this study, we found that the expression level of HIF-1α in keloid tissue was significantly higher than that in the normal skin tissue. Hypoxia-induced HIF-1α expression significantly inhibited cellular apoptosis and promoted cellular proliferation in keloid fibroblasts but not in normal fibroblasts. Specifically, HIF-1α activated the TGF-β/Smad and TLR4/MyD88/NF-κB pathways, and the interaction of these two pathways may promote the development of keloids. Moreover, <i>in vivo</i> experiments showed that the inhibition of HIF-1α significantly reduced the growth of keloids.
DOI: 10.6084/m9.figshare.22604558
title: Additional file 4 of Identification of the prognostic value of Th1/Th2 ratio and a novel prognostic signature in basal-like breast cancer

description: Additional file 4: Table S4.
DOI: 10.6084/m9.figshare.7927646.v1
title: MOESM1 of GSTM1 and GSTT1 null genotype increase the risk of hepatocellular carcinoma: evidence based on 46 studies

description: Additional file 1: Table S1. The evaluation of the data quality in this meta-analysis.
DOI: 10.6084/m9.figshare.20510559.v2
title: Parent–Child communication about concussion: what role can the Centers for Disease Control and Prevention’s HEADS UP concussion in youth sports handouts play?

description: Concussion education for parents/guardians (hereafter referred to as parents) has the potential to play an important role in youth athlete concussion safety. The goal of this study was to evaluate the impact of the Centers for Disease Control and Prevention’s (CDC) HEADS UP handout on parent–child communication about concussion. YMCA branches from 15 associations from across the United States were randomized to CDC HEADS UP intervention condition or education as usual control condition using a cluster randomization strategy. In the intervention condition, coaches shared parent- and athlete-specific handouts with parents and asked parents to share and discuss the athlete-specific handouts with their child. Generalized estimating equations, with repeated measures to account for the correlation among matched participants and YMCA associations, were employed. Multivariable analyses exploring the relationship between time (pre- and post-intervention) and communication showed that the percent of parents who talked to their child about concussion increased in the intervention group (aRR=1.33, 95% CI=1.22, 1.44), but not in the control group. CDC HEADS UP handouts help families talk about concussion safety. Sports organizations seeking to educate parents of athletes about concussion should consider using CDC HEADS UP handouts and following a similar dissemination strategy.
DOI: 10.6084/m9.figshare.7927598
title: Additional file 1: of Weighted correlation network and differential expression analyses identify candidate genes associated with BRAF gene in melanoma

description: Figures S1-S3. Rows represent expression of 17 genes in melanoma samples (first), TCGA/GTEx (second), and TCGA (third), where genes were aligned by column. As the NCRNA00312 gene could not be retrieved, expression and survival results could not be obtained in GEPIA. Significance was determined as described in the caption of Fig. 6. (ZIP 3130 kb)
DOI: 10.6084/m9.figshare.7927604.v1
title: Additional file 1: of Comparative genomics and transcriptomics analysis reveals evolution patterns of selection in the Salix phylogeny

description: Table S1. Main geographic distributions of 9 Salix used in this work. Table S2. Geographic distributions of main species in Sect. Psilostigmatae. Table S3. GO annotation of shared orthologues in 10 Salicaceae species. Table S4. Information of resistance genes involved in positive selection in Genus Salix. (XLS 60 kb)
DOI: 10.6084/m9.figshare.13167366
title: Additional file 2 of Identification of microflora related to growth performance in pigs based on 16S rRNA sequence analyses

description: Additional file 2: Table S2. Diversity indices and summary of the 16S rRNA gene pyrosequencing data.
DOI: 10.6084/m9.figshare.22606324.v1
title: Additional file 16 of Iris lactea var. chinensis plant drought tolerance depends on the response of proline metabolism, transcription factors, transporters and the ROS-scavenging system

description: Additional file 16.
DOI: 10.6084/m9.figshare.12121794
title: Additional file 1 of Combined lateral peripatellar and posteromedial approaches for Schatzker type IV tibial plateau fractures involving posteromedial plane: a prospective study

description: Additional file 1.
DOI: 10.6084/m9.figshare.22606327.v1
title: Additional file 17 of Iris lactea var. chinensis plant drought tolerance depends on the response of proline metabolism, transcription factors, transporters and the ROS-scavenging system

description: Additional file 17.
DOI: 10.6084/m9.figshare.24179220.v1
title: ER stress elicits non-canonical CASP8 (caspase 8) activation on autophagosomal membranes to induce apoptosis

description: The <i>VPS37A</i> gene encodes a subunit of the endosomal sorting complex required for transport (ESCRT)-I complex that is frequently lost in a wide variety of human solid cancers. We have previously demonstrated the role of VPS37A in directing the ESCRT membrane scission machinery to seal the phagophore for autophagosome completion. Here, we report that <i>VPS37A</i>-deficient cells exhibit an accumulation of the apoptotic initiator CASP8 (caspase 8) on the phagophore and are primed to undergo rapid apoptosis through the intracellular death-inducing signaling complex (iDISC)-mediated CASP8 activation upon exposure to endoplasmic reticulum (ER) stress. Using CRISPR-Cas9 gene editing and comparative transcriptome analysis, we identified the ATF4-mediated stress response pathway as a crucial mediator to elicit iDISC-mediated apoptosis following the inhibition of autophagosome closure. Notably, ATF4-mediated iDISC activation occurred independently of the death receptor TNFRSF10B/DR5 upregulation but required the pro-apoptotic transcriptional factor DDIT3/CHOP to enhance the mitochondrial amplification pathway for full-activation of CASP8 in <i>VPS37A</i>-deficient cells stimulated with ER stress inducers. Our analysis also revealed the upregulation of NFKB/NF-kB signaling as a potential mechanism responsible for restraining iDISC activation and promoting cell survival upon <i>VPS37A</i> depletion. These findings have important implications for the future development of new strategies to treat human cancers, especially those with <i>VPS37A</i> loss.
DOI: 10.18128/m130-016.2024-02
title: Cisheterosexism - county - same-sex households

description: The county-level same-sex household measures include the proportion of same-sex unions among all unions (married plus unmarried partnerships), the proportion of same-sex marriages among all marriages, the proportion of same-sex marriages among all same-sex unions, and the proportion of same-sex unions among all households.
DOI: 10.6084/m9.figshare.22604057
title: Additional file 1 of DNA methylome and transcriptome identified Key genes and pathways involved in Speckled Eggshell formation in aged laying hens

description: Additional file 1: Supplementary Table 1. Information on sequencing samples.
DOI: 10.6084/m9.figshare.22604060
title: Additional file 2 of DNA methylome and transcriptome identified Key genes and pathways involved in Speckled Eggshell formation in aged laying hens

description: Additional file 2: Supplementary Table 2. Specific primers for qRT-PCR.
DOI: 10.15468/dl.w7csu5
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muraltia diabolica Levyns"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056928-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pws5qf
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poospiza erythrophrys P.L.Sclater, 1881"
 ]
}

 The dataset includes 122 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056930-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.239br7
title: Occurrence Download

description: A dataset containing 262 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megadenia pygmaea Maxim."
 ]
}

 The dataset includes 262 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056929-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cx3gx3
title: Occurrence Download

description: A dataset containing 479 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poospiza garleppi (Berlepsch, 1893)"
 ]
}

 The dataset includes 479 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056932-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2jbwb
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Memecylon sitanum Jacq.-Fél."
 ]
}

 The dataset includes 45 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056931-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jtgtpp
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mitragyna diversifolia (Wall. ex G.Don) Havil."
 ]
}

 The dataset includes 233 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056933-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/7976585
title: Top Spotify Songs in 73 Countries (Daily Updated)