cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21954/ou.rd.14737941.v1
title: Isolating and Predicting Risks in Architectural Design - Metric Analysis Replication Data

description: This zip file contains the replication data set for thesis entitled 'Isolating and Predicting Risks in Architectural Design' by Andrew Leigh. <br>To examine the relationship between container level design metrics and risk, a non-experimental quantitative approach that combined causal comparative and correlation design was selected. A causal comparative approach was needed to test the relative performance of the different risk container types, and a correlation design was needed to test the strength of association between the container design metrics calculated for each container type and error-proneness/change propagation. <br> The causal comparative correlation testing required sources of comparable design and outcome data from software development projects. Outcome data for the maintainability risks selected for testing, error-proneness and change propagation, is collected from source code repositories such as Subversion and Git, and issue tracking systems such as Jira. Section 3.2 of the thesis further expands upon the details of, and rationale behind, the specific project selection criteria as well as explaining how the selected projects meet those criteria. This replication data set contains the data collected for the four projects selected.
DOI: 10.6084/m9.figshare.14785854
title: ST69 reference assembly

description: E. coli ST69 hybrid assembly
DOI: 10.6084/m9.figshare.14785854.v1
title: ST69 reference assembly

description: E. coli ST69 hybrid assembly
DOI: 10.21954/ou.rd.14737962
title: Isolating and Predicting Risks in Architectural Design - Meaningful Experiment Data

description: Contains participant responses for the meaningful experiment conducted as part of the thesis entitled 'Isolating and Predicting Risks in Architectural Design' by Andrew Leigh.<br>An on-line experiment was used to test hypothesis H5 (if Design Rule, Resource, and Use Case Containers are meaningful to architects and developers, they should help to better manage mitigations used in practice) and answer RQ2 in order to assess whether any of the three risk container types satisfy the final meaningful criterion M3 (help to better manage mitigations used in practice). The on-line experiment is based around an architecture review scenario for a toy architecture because performing an architecture review is an example of a mitigation that is commonly used in practice. The experiment provides qualitative and quantitative evidence about whether presenting an architecture as a series of container diagrams helps practitioners to locate error inducing flaws and impact changes during the review. Participants are randomly assigned to one of four different groups (control, Design Rule Container, Resource Container, and Use Case Container) and each group must undertake the review exercise using a series of container diagrams or a single control diagram according to their assigned group. Participants also answer an open question to capture their attitudes towards completing the exercise. Section 7.1 of the thesis describes the experiment designed to answer RQ2 in more detail. This csv file contains the participant responses collected during the experiment.
DOI: 10.21954/ou.rd.14737962.v1
title: Isolating and Predicting Risks in Architectural Design - Meaningful Experiment Data

description: Contains participant responses for the meaningful experiment conducted as part of the thesis entitled 'Isolating and Predicting Risks in Architectural Design' by Andrew Leigh.<br>An on-line experiment was used to test hypothesis H5 (if Design Rule, Resource, and Use Case Containers are meaningful to architects and developers, they should help to better manage mitigations used in practice) and answer RQ2 in order to assess whether any of the three risk container types satisfy the final meaningful criterion M3 (help to better manage mitigations used in practice). The on-line experiment is based around an architecture review scenario for a toy architecture because performing an architecture review is an example of a mitigation that is commonly used in practice. The experiment provides qualitative and quantitative evidence about whether presenting an architecture as a series of container diagrams helps practitioners to locate error inducing flaws and impact changes during the review. Participants are randomly assigned to one of four different groups (control, Design Rule Container, Resource Container, and Use Case Container) and each group must undertake the review exercise using a series of container diagrams or a single control diagram according to their assigned group. Participants also answer an open question to capture their attitudes towards completing the exercise. Section 7.1 of the thesis describes the experiment designed to answer RQ2 in more detail. This csv file contains the participant responses collected during the experiment.
DOI: 10.6073/pasta/7d118da91853be365df98b1339d2d580
title: Development and Expansion of Peatlands in Central New England from 14000 BP to Present

description: As peatlands form they create a temporal archive of community development, allowing the reconstruction of vegetation dynamics through the analysis of sediments and the development of detailed chronologies of successional change. Peatland formation occurs through two mechanisms: (i) terrestrialization, when a water body fills with sediments and peat; and (ii) paludification, the conversion of dry land to peatland. In temperate regions, where high summer temperatures may limit peat accumulation, general models of peatland development suggest that allogenic factors such as climate change control peatland development and that terrestrialization is the primary mechanism of formation. This study evaluates this widely accepted model by comparing the developmental histories of three peatlands within the same climate region in New England in order to: (i) describe the development and timing of successional events among peatlands; (ii) document the roles of paludification and terrestrialization as developmental mechanisms; and (iii) evaluate the importance of climate change vs. autogenic factors in peatland development in this temperate region. Basin morphometry, sediment stratigraphies, and chronologies of community change determined through radiocarbon dating indicate that peatland development at each site involved terrestrialization followed by paludification, with no apparent influence of broad-scale climate change on the timing of these processes. Paludification was consistently initiated coincident with the consolidation of a shrub mat across each lake-basin, and was controlled in extent and rate by the topography of the adjoining uplands. The timing of stratigraphic changes varied among sites, suggesting that autogenic factors associated with the accumulation of peat rather than regional climate change controlled development. These results provide the foundation for a model of temperate peatland development driven by autogenic factors and caution against the use of temperate peatland development as a proxy for climatic reconstruction.
DOI: 10.5066/p9oj5s2y
title: National Assessment of Oil and Gas Project Anadarko Basin Province (058) Total Petroleum Systems

description: The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the assessment of undiscovered oil and gas resources. The Total Petroleum System is shown here as a geographic boundary defined and mapped by the geologist responsible for the province and incorporates not only the set of known or postulated oil and (or) gas accumulations, but also the geologic interpretation of the essential elements and processes within the petroleum system that relate to source, generation, migration, accumulation, and trapping of the discovered and undiscovered petroleum resource(s).
DOI: 10.21227/k9ca-z467
title: The trained networks and the images for test

description: The files contain the trained networks (Alexnet, Resnet 18, VGG19, and SRN) for classify the upsampled quadrant data by wavelength.
DOI: 10.17632/fb7x34b7zs.1
title: 8 years of hourly heating and electricity consumption data- a residential building

description: The heating and electricity consumption data are the results of an energy audit program aggregated for multiple load profiles of a residential customer. These profiles include HVAC systems loads, convenience power, elevator, etc. The datasets are gathered between December 2010 and November 2018 with a one-hour timestep resolution, thereby containing 140,160 measurements, half of which is for heat or electricity. In addition to the historical energy consumption values, a concatenation of weather variables is also available. The weather variables are air pressure, temperature, and humidity plus wind speed, cloudiness percentage, and solar irradiation at the predetermined location.
DOI: 10.6084/m9.figshare.14398127
title: A genomic epidemiological study shows prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usage.

description: Supplementary Material for ‘A genomic epidemiological study shows prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usage’ as published in <i>Microbial Genomics</i><b>.</b>
DOI: 10.6084/m9.figshare.14398127.v1
title: A genomic epidemiological study shows prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usage.

description: Supplementary Material for ‘A genomic epidemiological study shows prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usage’ as published in <i>Microbial Genomics</i><b>.</b>
DOI: 10.6084/m9.figshare.14784468.v1
title: Untitled Item

description: Benchmark datasets used in Dai et al. Accurate and fast cell marker gene identification with COSG (2021).
DOI: 10.5066/p9sa4wco
title: National Assessment of Oil and Gas Project - Michigan Basin Province (063) Quarter-Mile Cells

description: Cell maps for each oil and gas assessment unit were created by the USGS to illustrate the degree of exploration, type of production, and distribution of production in an assessment unit or province. Each cell represents a quarter-mile square of the land surface, and the cells are coded to represent whether the wells included within the cell are predominantly oil-producing, gas-producing, both oil and gas-producing, dry, or the type of production of the wells located within the cell is unknown. The well information was initially retrieved from the IHS Energy Group, PI/Dwights PLUS Well Data on CD-ROM, which is a proprietary, commercial database containing information for most oil and gas wells in the U.S. Cells were developed as a graphic solution to overcome the problem of displaying proprietary PI/Dwights PLUS Well Data. No proprietary data are displayed or included in the cell maps. The data from PI/Dwights PLUS Well Data were current as of October 2002 when the cell maps were created in 2004.
DOI: 10.6084/m9.figshare.14784468
title: Untitled Item

description: Benchmark datasets used in Dai et al. Accurate and fast cell marker gene identification with COSG (2021).
DOI: 10.17632/3r2bfsjyzz.1
title: Data for: Potency testing for a recombinant protein vaccine early in clinical development: lessons from the Schistosoma mansoni Tetraspanin 2 vaccine

description: This dataset contains the potency data used for analysis in the paper “Potency testing for a recombinant protein vaccine early in clinical development: lessons from the Schistosoma mansoni Tetraspanin 2 vaccine” published in Vaccine X. Variable names and descriptions Lot #: The two manufactured lots (Aeras Lot# 11-69f-003 and WRAIR Lot #1975) of the recombinant Schistosoma mansoni (Sm) Tetraspanin-2 vaccine formulated on Alhydrogel (Sm-TSP-2/Al). Months Post-release: Potency timepoint in months post-release (0 = at release). Dose in μg: Immunization dose of Sm-TSP-2. Optical Density (OD): Optical Density measured at 492nm by indirect ELISA in serum samples diluted at 1:6000. Arbitrary Units (AU): Anti-Sm-TSP-2 IgG levels reported in Arbitrary Units (AU) determined from interpolating OD492nm for each sample onto a Global Standard Calibration Curve (GSCC). Reactivity Threshold (RT) in AU: The concentration of antibody expressed in AUs of IgG against Sm-TSP-2/Al, corresponding to the interpolated intersection of the lower asymptote of the upper 95% confidence limit with the lower 95% confidence limit of the GSCC. Limit of Quantification (LOQ) in AU: The concentration of antibody expressed in AUs of IgG against Sm-TSP-2/Al, corresponding to the interpolated intersection of the lower asymptote of the upper 95% confidence limit with the GSCC. Seropositivity: Whether the mouse seroconverted post-prime immunization (0= negative; 1= positive); Mice were considered seroconverted, or "responders", if the AU was above RT.
DOI: 10.17632/vgw8sjxsyv.1
title: DNA-loop extruding SMC complexes can traverse one another in vivo

description: Unprocessed microscopy images; uncropped blots and associated images to show the molecular wight marker
DOI: 10.17632/sk6vv53cz4.2
title: Skin, Human Body Heat Map

description: JMP Files and Instructions to present data in the form of a "heat map" of a human body.
DOI: 10.5281/zenodo.4957909
title: Bridge Deck Inspection Using Small Unmanned Aircraft Systems Based Airborne Imaging Techniques

description: As one of critical components of a transportation infrastructure system, bridges are very important to a country’s economy because they provide passage over physical obstacles to substantially reduce travel time and travel cost. Similar to other types of transportation infrastructure, bridges deteriorate over time. Therefore, bridges should be routinely inspected to ensure their serviceability, capacity, and safety under current traffic. Subsequently, transportation agencies at all levels (e.g., federal, state, local, and tribal) dedicate large amounts of time and money to routinely monitor and inspect bridge conditions as part of their infrastructure asset management programs. These transportation agencies use the collected data to make maintenance, repair, and construction decisions. As one important component of bridge inspection, bridge deck inspection ensures the serviceability and safety of everything above, on, and in bridge decks. Traditionally, bridge deck inspection is performed on the ground by having inspectors either visually inspect surface conditions or interpret the acoustic feedback from hammer sounding or chain dragging to determine subsurface conditions. These traditional methods have many limitations, including but not limited to, expensive, labor-intensive, time-consuming, can exhibit a high degree of variability, requiring specialized staff on a regular basis, and unsafe. Recent advancements in remote sensing, especially small-unmanned aircraft systems (S-UAS) based airborne imaging techniques and object based image analysis techniques, have shown promise in improving bridge deck inspection. This project explored the utility of S-UAS based airborne imaging techniques and object based image processing techniques in developing a complete data acquisition and analysis system to accurately and rapidly detect and assess bridge deck wearing surface and subsurface distresses at a low cost. This project developed a guidebook for the implementation of the proposed S-UAS based inspection system to assist transportation agencies with workforce development and professional training.
description: Tran-SET Project: 19STUNM04
DOI: 10.5281/zenodo.4957908
title: Bridge Deck Inspection Using Small Unmanned Aircraft Systems Based Airborne Imaging Techniques

description: As one of critical components of a transportation infrastructure system, bridges are very important to a country’s economy because they provide passage over physical obstacles to substantially reduce travel time and travel cost. Similar to other types of transportation infrastructure, bridges deteriorate over time. Therefore, bridges should be routinely inspected to ensure their serviceability, capacity, and safety under current traffic. Subsequently, transportation agencies at all levels (e.g., federal, state, local, and tribal) dedicate large amounts of time and money to routinely monitor and inspect bridge conditions as part of their infrastructure asset management programs. These transportation agencies use the collected data to make maintenance, repair, and construction decisions. As one important component of bridge inspection, bridge deck inspection ensures the serviceability and safety of everything above, on, and in bridge decks. Traditionally, bridge deck inspection is performed on the ground by having inspectors either visually inspect surface conditions or interpret the acoustic feedback from hammer sounding or chain dragging to determine subsurface conditions. These traditional methods have many limitations, including but not limited to, expensive, labor-intensive, time-consuming, can exhibit a high degree of variability, requiring specialized staff on a regular basis, and unsafe. Recent advancements in remote sensing, especially small-unmanned aircraft systems (S-UAS) based airborne imaging techniques and object based image analysis techniques, have shown promise in improving bridge deck inspection. This project explored the utility of S-UAS based airborne imaging techniques and object based image processing techniques in developing a complete data acquisition and analysis system to accurately and rapidly detect and assess bridge deck wearing surface and subsurface distresses at a low cost. This project developed a guidebook for the implementation of the proposed S-UAS based inspection system to assist transportation agencies with workforce development and professional training.
description: Tran-SET Project: 19STUNM04
DOI: 10.6084/m9.figshare.14681274
title: Metadata record for the article: Prediction of quality of life in early breast cancer upon completion of adjuvant chemotherapy

description: <b>Summary</b><br> This metadata record provides details of the data supporting the claims of the related article: “Prediction of quality of life in early breast cancer upon completion of adjuvant chemotherapy”. The related study aimed to predict health status upon completion of adjuvant chemotherapy adjusted for multiple covariates, towards developing a predictive model of quality of life (QoL) after adjuvant chemotherapy. Type of data: predictions of health status upon completion of adjuvant chemotherapy adjusted for multiple covariates Subject of data: <i>Homo sapiens</i> Sample size: 219 Population characteristics: The main covariates were age (continuous, non-linear), TNM classification of malignant tumours, 8th edition (stage I, II, III), patient’s perceived risk of recurrence (4-point Likert scale: low/ intermediate/ high/ very high risk), type of surgery on the primary tumour (total mastectomy vs BCS), axillary surgery (axillary lymph node dissection (ALND) [yes vs no]), the pre-chemotherapy EORTC QLQ-C30 sum score, and planned chemotherapy regimen (taxane-containing regimens and use of anthracyclines). Other clinical or sociodemographic variables (e.g., social status, number of children, etc.) were considered for descriptive purposes. Recruitment: The data are from a prospective cohort of individuals with early and locally advanced breast cancer from the NEOCOPING multicohort study. <b>Data access</b> The breast cancer quality of life datasets are openly available as part of this <i>figshare </i>data record in the files ‘breast_cppo.xlsx’ (underlying Figs 2-4, Tables 1-2, Supp Figs 2-8, Supp Tab 2 of the related article), ‘breast_scores.xlsx’ (underlying Fig 1) and ‘breast_qlq_c30.xlsx’ (underlying Supp Tab 3). <b>Corresponding author(s) for this study</b> Alberto Carmona-Bayonas, MD, PhD, Hospital Universitario Morales Meseguer, Calle Marqués of los Vélez s/n, Murcia, Spain; e-mail: alberto.carmonabayonas@gmail.com. ORCID id: https://orcid.org/0000-0002-1930-9660 <br> <b>Study approval </b> The study was performed in accordance with the ethical standards of the Declaration of Helsinki and its subsequent amendments. This observational, non-interventional trial was approved by the Research Ethics Committee of the Principality of Asturias (19 January 2015) and by the Spanish Agency of Medicines and Medical Devices (AEMPS) (number: L34LM-MM2GH-Y925U-RJDHQ).
DOI: 10.6084/m9.figshare.14681274.v1
title: Metadata record for the article: Prediction of quality of life in early breast cancer upon completion of adjuvant chemotherapy

description: <b>Summary</b><br> This metadata record provides details of the data supporting the claims of the related article: “Prediction of quality of life in early breast cancer upon completion of adjuvant chemotherapy”. The related study aimed to predict health status upon completion of adjuvant chemotherapy adjusted for multiple covariates, towards developing a predictive model of quality of life (QoL) after adjuvant chemotherapy. Type of data: predictions of health status upon completion of adjuvant chemotherapy adjusted for multiple covariates Subject of data: <i>Homo sapiens</i> Sample size: 219 Population characteristics: The main covariates were age (continuous, non-linear), TNM classification of malignant tumours, 8th edition (stage I, II, III), patient’s perceived risk of recurrence (4-point Likert scale: low/ intermediate/ high/ very high risk), type of surgery on the primary tumour (total mastectomy vs BCS), axillary surgery (axillary lymph node dissection (ALND) [yes vs no]), the pre-chemotherapy EORTC QLQ-C30 sum score, and planned chemotherapy regimen (taxane-containing regimens and use of anthracyclines). Other clinical or sociodemographic variables (e.g., social status, number of children, etc.) were considered for descriptive purposes. Recruitment: The data are from a prospective cohort of individuals with early and locally advanced breast cancer from the NEOCOPING multicohort study. <b>Data access</b> The breast cancer quality of life datasets are openly available as part of this <i>figshare </i>data record in the files ‘breast_cppo.xlsx’ (underlying Figs 2-4, Tables 1-2, Supp Figs 2-8, Supp Tab 2 of the related article), ‘breast_scores.xlsx’ (underlying Fig 1) and ‘breast_qlq_c30.xlsx’ (underlying Supp Tab 3). <b>Corresponding author(s) for this study</b> Alberto Carmona-Bayonas, MD, PhD, Hospital Universitario Morales Meseguer, Calle Marqués of los Vélez s/n, Murcia, Spain; e-mail: alberto.carmonabayonas@gmail.com. ORCID id: https://orcid.org/0000-0002-1930-9660 <br> <b>Study approval </b> The study was performed in accordance with the ethical standards of the Declaration of Helsinki and its subsequent amendments. This observational, non-interventional trial was approved by the Research Ethics Committee of the Principality of Asturias (19 January 2015) and by the Spanish Agency of Medicines and Medical Devices (AEMPS) (number: L34LM-MM2GH-Y925U-RJDHQ).
DOI: 10.6084/m9.figshare.14785911
title: AllVariantsMergedForPub2.xlsx.zip

description: Collections of Variants in a set of 17 blood and bleeding disorders genes genes from 1280 patients.<br><br>
DOI: 10.6084/m9.figshare.14785983
title: Supplemental Table 1 Final.xlsx

description: Proteomic analysis data spreadsheets of conditioned culture media proteome from neutrophil elastase vs control treated RAW264.7 macrophage cultures.
DOI: 10.6084/m9.figshare.14785962.v1
title: Aggression and Malevolent Creativity.csv

description: The participants of this study are 428 college students (mean age = 19.44 years, SD = 1.39 year; 100 males, 328 females). The participants complete a battery of questionnaires, including the Buss & Perry aggression questionnaire, Anger Rumination Scale, Effortful Control Scale, and Malevolent Creativity Behavior Scale.