cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7033847
title: MOESM1 of Long-term effects of environmentally relevant concentrations of silver nanoparticles on major soil bacterial phyla of a loamy soil

description: Additional file 1.
DOI: 10.6084/m9.figshare.7033847.v1
title: MOESM1 of Long-term effects of environmentally relevant concentrations of silver nanoparticles on major soil bacterial phyla of a loamy soil

description: Additional file 1.
DOI: 10.6084/m9.figshare.7033835
title: Additional file 5: of Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

description: Table S3. Details of co-pathogens in people with M3L7/M3L1 infection at time of isolation and in the previous 12Â months. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7033835.v1
title: Additional file 5: of Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

description: Table S3. Details of co-pathogens in people with M3L7/M3L1 infection at time of isolation and in the previous 12Â months. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7033829
title: Additional file 6: of Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic escape mechanism in glioblastoma

description: Supplementary Figure 4. Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic resistance mechanism in glioblastoma. (ZIP 94 kb)
DOI: 10.6084/m9.figshare.7033829.v1
title: Additional file 6: of Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic escape mechanism in glioblastoma

description: Supplementary Figure 4. Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic resistance mechanism in glioblastoma. (ZIP 94 kb)
DOI: 10.6084/m9.figshare.7033820
title: Additional file 5: of Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic escape mechanism in glioblastoma

description: Supplementary Figure 3. Bevacizumab is detectable in GBM cells and on GBM cells-derived EVs following treatment. (ZIP 1930 kb)
DOI: 10.6084/m9.figshare.7033823
title: Additional file 1: of A systematic review of cognitive functioning in early treated adults with phenylketonuria

description: Table S1. Summary of papers included within the systematic review. Data extraction table summarising the main characteristics of each of the papers included in this review. The table provides an overview of all information provided by each publication in regard to: the number of adults with phenylketonuria (PKU) and controls (where applicable), sex, age, IQ, classification of PKU, time of diagnosis, onset of treatment, treatment status, duration of treatment, measures of metabolic control and cognitive measures used and reported outcomes. (XLS 76 kb)
DOI: 10.6084/m9.figshare.7033820.v1
title: Additional file 5: of Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic escape mechanism in glioblastoma

description: Supplementary Figure 3. Bevacizumab is detectable in GBM cells and on GBM cells-derived EVs following treatment. (ZIP 1930 kb)
DOI: 10.6084/m9.figshare.7033823.v1
title: Additional file 1: of A systematic review of cognitive functioning in early treated adults with phenylketonuria

description: Table S1. Summary of papers included within the systematic review. Data extraction table summarising the main characteristics of each of the papers included in this review. The table provides an overview of all information provided by each publication in regard to: the number of adults with phenylketonuria (PKU) and controls (where applicable), sex, age, IQ, classification of PKU, time of diagnosis, onset of treatment, treatment status, duration of treatment, measures of metabolic control and cognitive measures used and reported outcomes. (XLS 76 kb)
DOI: 10.6084/m9.figshare.7033814
title: Additional file 1: of Incidence and clinical outcomes of diabetes mellitus in HIV-infected adults in Thailand: a retrospective cohort study

description: Table S1. Sensitivity analysis for variable with missing data using multivariable competing risk regression analyses of potential risk factors for diabetes mellitus only complete cases (treating death without diabetes mellitus as a competing event). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7033814.v1
title: Additional file 1: of Incidence and clinical outcomes of diabetes mellitus in HIV-infected adults in Thailand: a retrospective cohort study

description: Table S1. Sensitivity analysis for variable with missing data using multivariable competing risk regression analyses of potential risk factors for diabetes mellitus only complete cases (treating death without diabetes mellitus as a competing event). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7033817
title: Additional file 4: of Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

description: Table S2. Overlapping admissions to a hospital ward for patients and first detection of M3L7. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7033817.v1
title: Additional file 4: of Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

description: Table S2. Overlapping admissions to a hospital ward for patients and first detection of M3L7. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7033799
title: Additional file 4: of Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic escape mechanism in glioblastoma

description: Supplementary Table 1. Mass spectrometry analysis of EVs content following treatment with IgG1/bevacizumab. Table 2. Mass spectrometry analysis of EVs content following treatment with IgG1/bevacizumab. (ZIP 504 kb)
DOI: 10.6084/m9.figshare.7033799.v1
title: Additional file 4: of Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic escape mechanism in glioblastoma

description: Supplementary Table 1. Mass spectrometry analysis of EVs content following treatment with IgG1/bevacizumab. Table 2. Mass spectrometry analysis of EVs content following treatment with IgG1/bevacizumab. (ZIP 504 kb)
DOI: 10.6084/m9.figshare.7033778
title: Additional file 3: of Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic escape mechanism in glioblastoma

description: Supplementary Figure 2. MS protein hits identified in LN18 and U87 GBM cells-derived EVs following 24h treatment with 0.25 mg/mL IgG1/bevacizumab (FunRich analysis). (ZIP 842 kb)
DOI: 10.6084/m9.figshare.7033778.v1
title: Additional file 3: of Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic escape mechanism in glioblastoma

description: Supplementary Figure 2. MS protein hits identified in LN18 and U87 GBM cells-derived EVs following 24h treatment with 0.25 mg/mL IgG1/bevacizumab (FunRich analysis). (ZIP 842 kb)
DOI: 10.6084/m9.figshare.7033766
title: Additional file 2: of Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic escape mechanism in glioblastoma

description: Supplementary Figure 1. Direct effect of bevacizumab on LN18 and U87 GBM cells. (ZIP 375 kb)
DOI: 10.6084/m9.figshare.7033763
title: Additional file 1: of Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

description: Table S1. Details of Pseudomonas aeruginosa isolates and genome assembly metrics used in this study. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7033766.v1
title: Additional file 2: of Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic escape mechanism in glioblastoma

description: Supplementary Figure 1. Direct effect of bevacizumab on LN18 and U87 GBM cells. (ZIP 375 kb)
DOI: 10.6084/m9.figshare.7033763.v1
title: Additional file 1: of Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

description: Table S1. Details of Pseudomonas aeruginosa isolates and genome assembly metrics used in this study. (XLSX 14 kb)
DOI: 10.21227/18fm-1732
title: Lissajous grid projection and center pixel stability with and without synchronization control

description: For Lissajous scanning the synchronization of both axis is crucial. The laser beam is deflected vertically by the first MEMS mirror, redirected to the second mirror and deflected horizontally. In the proposed master slave concept, the synchronization controller Φ compensates for relative phase errors by duty cycle adjustments while individual PLLs keep each MEMS mirror stabilized. This videos show how the projected grid and center pixel drifts if the synchroniaztion controller between both MEMS mirrors with individual PLLs is turned off.
DOI: 10.6084/m9.figshare.12885533
title: R0191_20170928a_videos

description: Rat 0191, skilled reaching data collected on 9/28/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12885533.v1
title: R0191_20170928a_videos

description: Rat 0191, skilled reaching data collected on 9/28/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.7033688
title: Additional file 3: of Evolution of dental tissue mineralization: an analysis of the jawed vertebrate SPARC and SPARC-L families

description: Protein sequence alignment – 235 amino-acids. (PHY 15 kb)
DOI: 10.6084/m9.figshare.7033688.v1
title: Additional file 3: of Evolution of dental tissue mineralization: an analysis of the jawed vertebrate SPARC and SPARC-L families

description: Protein sequence alignment – 235 amino-acids. (PHY 15 kb)
DOI: 10.6084/m9.figshare.7033670
title: Additional file 1: of Evolution of dental tissue mineralization: an analysis of the jawed vertebrate SPARC and SPARC-L families

description: SPARC and SPARC-L sequences used in the phylogenetic reconstruction. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7033670.v1
title: Additional file 1: of Evolution of dental tissue mineralization: an analysis of the jawed vertebrate SPARC and SPARC-L families

description: SPARC and SPARC-L sequences used in the phylogenetic reconstruction. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7033655
title: Additional file 1: of High-resolution genetic linkage map of European pear (Pyrus communis) and QTL fine-mapping of vegetative budbreak time

description: Table S1. Marker data for the F1 SPD x HS genetic map consisting of 17 linkage groups constructed in this study. Table S2. European pear genome Scaffold alignment to linkage groups. Table S3. Neighbor-joining matrix of common SNP alleles within the 21 pear accessions. Table S4. Association mapping results of significant markers exceeding the permutation test for chilling requirements of 21 Pyrus spp. accessions. (XLS 347 kb)
DOI: 10.6084/m9.figshare.7033631
title: Plurality.RData

description: data for:<br>Plurality in multi-disciplinary research: Multiple institutional affiliations are associated with increased citations<br>
DOI: 10.6084/m9.figshare.7033631.v1
title: Plurality.RData

description: data for:<br>Plurality in multi-disciplinary research: Multiple institutional affiliations are associated with increased citations<br>
DOI: 10.6084/m9.figshare.7033556
title: Implications of upper-mantle seismicity for deformation in the continental collision zone beneath the Alpine Fault, South Island, New Zealand

description: We review the state of knowledge regarding lower-crustal and upper-mantle deformation in the continental collision zone beneath the Alpine Fault in the central South Island. Existing lithospheric deformation models based on a variety of geophysical observations and different interpretations of tectonic reconstructions range from intra-continental subduction to lithospheric mantle thickening. We derive independent information in the 40–80 km depth range from a new catalogue of 78 upper mantle earthquakes, after almost a decade’s observations (2006–2016). The events occur in both the Australian and Pacific plates, are clustered in distinct locations that coincide with positive magnetic anomalies and follow an inferred structural trend differing from the current plate boundary orientation. For two event clusters 13 new well-constrained focal mechanism solutions are used for stress field inversion. This yields a common, sub-horizontal maximum compressive stress orientation (120° ± 27° and 120° ± 22°) but suggests different intermediate and minimum principal stress orientations. Based on this we cannot unequivocally distinguish published mantle deformation models but we can evaluate certain model features. Strong upper-mantle anisotropy together with a VP-VS-ratio of 1.73 ± 0.08 for upper-mantle earthquakes suggests that a proposed eclogite layer is unlikely to be present at upper mantle depths. We conclude that seismicity at depths ≥40 km reflects inherited heterogeneous strength distributions in the upper mantle and delineates areas in which deformation occurs along a (structural) convergence axis in the continental collision zone.
DOI: 10.6084/m9.figshare.7033577.v4
title: Deep image reconstruction from human brain activity

description: Shen, Horikawa, Majima, and Kamitani (2019) Deep image reconstruction from human brain activity. PLos Comput Biol. (bioRxiv preprint)<br>Here we provide DNN features decoded from human brain activity (decodedfeatures-*.mat files) as well as preprocessed fMRI data used for the decoding (sub-*.h5 files).<br><br>Raw fMRI data are available at OpenNeuro.<br><br>Demo code is available at GitHub.<br>
DOI: 10.6084/m9.figshare.7033556.v1
title: Implications of upper-mantle seismicity for deformation in the continental collision zone beneath the Alpine Fault, South Island, New Zealand

description: We review the state of knowledge regarding lower-crustal and upper-mantle deformation in the continental collision zone beneath the Alpine Fault in the central South Island. Existing lithospheric deformation models based on a variety of geophysical observations and different interpretations of tectonic reconstructions range from intra-continental subduction to lithospheric mantle thickening. We derive independent information in the 40–80 km depth range from a new catalogue of 78 upper mantle earthquakes, after almost a decade’s observations (2006–2016). The events occur in both the Australian and Pacific plates, are clustered in distinct locations that coincide with positive magnetic anomalies and follow an inferred structural trend differing from the current plate boundary orientation. For two event clusters 13 new well-constrained focal mechanism solutions are used for stress field inversion. This yields a common, sub-horizontal maximum compressive stress orientation (120° ± 27° and 120° ± 22°) but suggests different intermediate and minimum principal stress orientations. Based on this we cannot unequivocally distinguish published mantle deformation models but we can evaluate certain model features. Strong upper-mantle anisotropy together with a VP-VS-ratio of 1.73 ± 0.08 for upper-mantle earthquakes suggests that a proposed eclogite layer is unlikely to be present at upper mantle depths. We conclude that seismicity at depths ≥40 km reflects inherited heterogeneous strength distributions in the upper mantle and delineates areas in which deformation occurs along a (structural) convergence axis in the continental collision zone.
DOI: 10.6084/m9.figshare.7033577.v5
title: Deep image reconstruction from human brain activity

description: Shen, Horikawa, Majima, and Kamitani (2019) Deep image reconstruction from human brain activity. PLos Comput Biol. (bioRxiv preprint)<br>Here we provide DNN features decoded from human brain activity (decodedfeatures-*.mat files) as well as preprocessed fMRI data used for the decoding (sub-*.h5 files).<br><br>Raw fMRI data are available at OpenNeuro.<br><br>Demo code is available at GitHub.<br>
DOI: 10.6084/m9.figshare.7033577.v6
title: Deep image reconstruction from human brain activity

description: Shen, Horikawa, Majima, and Kamitani (2019) Deep image reconstruction from human brain activity. PLos Comput Biol. (bioRxiv preprint)<br>Here we provide DNN features decoded from human brain activity (decodedfeatures-*.mat files) as well as preprocessed fMRI data used for the decoding (sub-*.h5 files).<br><br>Raw fMRI data are available at OpenNeuro.<br><br>Demo code is available at GitHub.<br>
DOI: 10.6084/m9.figshare.7033538
title: Intertidal barnacle and mussel recruitment data from Nova Scotia, Canada

description: These are data on barnacle and mussel recruitment collected at 9 wave-exposed rocky intertidal locations along the Atlantic coast of Nova Scotia, Canada, between 2014 and 2018.
DOI: 10.6084/m9.figshare.7033538.v1
title: Intertidal barnacle and mussel recruitment data from Nova Scotia, Canada

description: These are data on barnacle and mussel recruitment collected at 9 wave-exposed rocky intertidal locations along the Atlantic coast of Nova Scotia, Canada, between 2014 and 2018.
DOI: 10.6084/m9.figshare.7033511
title: 2017 IF.xlsx

description: biomedical
DOI: 10.6084/m9.figshare.7033511.v1
title: 2017 IF.xlsx

description: biomedical
DOI: 10.6084/m9.figshare.7033490
title: simulation of random filaments with different conditions

description: simulation of random filaments with different labeling density, labeling uncertainty, non-specific label density, and signal level.
DOI: 10.6084/m9.figshare.7033481
title: Data.xlsx

description: Quanyin Hu et al. Dataset for [Conjugation of haematopoietic stem cells and platelets decorated with anti-PD-1 antibodies augments anti-leukaemia efficacy].
DOI: 10.6084/m9.figshare.7033490.v1
title: simulation of random filaments with different conditions

description: simulation of random filaments with different labeling density, labeling uncertainty, non-specific label density, and signal level.
DOI: 10.6084/m9.figshare.7033460
title: Woelders et al. (2018). Intensity and color increases time signal stability for the human circadian system when sunlight is obscured by clouds

description: This Fileset contains all (calibrated) data and R code required to reconstruct the analyses and graphs presented in the article.<br>- 1. rawData contains the calibrated data (added solar angles using analysis/misc/solarAngle.R and cloud cover information from analysis/misc/weather.txt)- 2. finalData contains the processed data, containing Date, Time, Solar Angle, Cloud Cover, Wavelength (nm), W/m2, Photons, Lens transmittance, Transmitted photons, log10 Transmitted photons, CIE x chromaticity, CIE y chromaticity, MacLeod & Boynton smb (S/[L+M]), MacLeod & Boynton lmb (L/[L+M]) and log10 Melanopic photons. This dataframe is constructed from 1. rawData/rawData.RData using the 1. add_chromaticity_effectivePhotons.R script- 3. modelledData contains the modelled data, containing the predicted solar angles from the KNN models constructed using the analysis/2. createKNN.R script- The figures are then created using the FigX.R scripts. The resulting figures can then be found in the 'graphs' folder. The corresponding statistical analyses can also be found in these scripts.
DOI: 10.6084/m9.figshare.7033454
title: ZBTB20

description: Images of rat primary cortical neurons transfected with ZBTB20 gene variants. Measurements of dendrites and dendritic spine in these neurons. Analyses of measurements.
DOI: 10.6084/m9.figshare.7033460.v2
title: Woelders et al. (2018). Intensity and color increases time signal stability for the human circadian system when sunlight is obscured by clouds

description: This Fileset contains all (calibrated) data and R code required to reconstruct the analyses and graphs presented in the article.<br>- 1. rawData contains the calibrated data (added solar angles using analysis/misc/solarAngle.R and cloud cover information from analysis/misc/weather.txt)- 2. finalData contains the processed data, containing Date, Time, Solar Angle, Cloud Cover, Wavelength (nm), W/m2, Photons, Lens transmittance, Transmitted photons, log10 Transmitted photons, CIE x chromaticity, CIE y chromaticity, MacLeod & Boynton smb (S/[L+M]), MacLeod & Boynton lmb (L/[L+M]) and log10 Melanopic photons. This dataframe is constructed from 1. rawData/rawData.RData using the 1. add_chromaticity_effectivePhotons.R script- 3. modelledData contains the modelled data, containing the predicted solar angles from the KNN models constructed using the analysis/2. createKNN.R script- The figures are then created using the FigX.R scripts. The resulting figures can then be found in the 'graphs' folder. The corresponding statistical analyses can also be found in these scripts.
DOI: 10.6084/m9.figshare.7033460.v1
title: Woelders et al. (2018). Intensity and color increases time signal stability for the human circadian system when sunlight is obscured by clouds

description: This Fileset contains all (calibrated) data and R code required to reconstruct the analyses and graphs presented in the article.<br>- 1. rawData contains the calibrated data (added solar angles using analysis/misc/solarAngle.R and cloud cover information from analysis/misc/weather.txt)- 2. finalData contains the processed data, containing Date, Time, Solar Angle, Cloud Cover, Wavelength (nm), W/m2, Photons, Lens transmittance, Transmitted photons, log10 Transmitted photons, CIE x chromaticity, CIE y chromaticity, MacLeod & Boynton smb (S/[L+M]), MacLeod & Boynton lmb (L/[L+M]) and log10 Melanopic photons. This dataframe is constructed from 1. rawData/rawData.RData using the 1. add_chromaticity_effectivePhotons.R script- 3. modelledData contains the modelled data, containing the predicted solar angles from the KNN models constructed using the analysis/2. createKNN.R script- The figures are then created using the FigX.R scripts. The resulting figures can then be found in the 'graphs' folder. The corresponding statistical analyses can also be found in these scripts.
DOI: 10.17608/k6.auckland.7033448
title: Revisiting Mathematical Equations in R: The 'dvir' package

description: This report describes an R package called 'dvir' that aims to use TeX as a layout engine, but performs all rendering within R. The package reads DVI files that are produced from TeX files and renders the content using the R package 'grid'.
DOI: 10.6084/m9.figshare.7033331
title: Dark Energy and Dark Matter

description: The rudiments of a theory of dark energy. The theoretical result is confronted with the numerical value calculated from the available data. Excellent matching of numerical values resulting in three independent paths makes the approach plausible. The work at hand is analogous to Kepler's laws of planetary orbits. Only Isaac Newton put Kepler 's laws on a theoretical basis, which is provided here by Thomas Görnitz [1]. The empirical Balmer formula for the frequencies of the spectral lines in the arc spectrum of hydrogen was also theoretically justified by Niels Bohr, who calculated the energy levels of the hydrogen atom and the frequencies of the spectral lines.<br>
DOI: 10.6084/m9.figshare.7033217
title: PubChem CID to USDA NDB mappings

description: Manually curated mapping from the USDA Nutrient Databases to NIH PubChem Compound Identifiers. Useful for connecting nutrient composition values directly to Cheminformatics and other Biomedical resources in NCBI.
DOI: 10.6084/m9.figshare.7033208
title: ChEBI to USDA NDB mappings

description: Manually curated mapping from the USDA Nutrient Databases to EMBL-EBI's Chemical Entities of Biological Interest (ChEBI) ontology. Useful for connecting nutrient composition values directly to biochemical pathways and Cheminformatics resources.
DOI: 10.6084/m9.figshare.7033217.v1
title: PubChem CID to USDA NDB mappings

description: Manually curated mapping from the USDA Nutrient Databases to NIH PubChem Compound Identifiers. Useful for connecting nutrient composition values directly to Cheminformatics and other Biomedical resources in NCBI.