cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14815494.v1
title: Supplementary Material for: Disparities between Asian and Non-Asian Thrombolyzed Acute Ischemic Stroke Patients in the Enhanced Control of Hypertension and Thrombolysis Stroke Trial

description: <b><i>Background and Purpose:</i></b> As outcomes for acute ischemic stroke (AIS) vary according to clinical profile and management approaches, we aimed to determine disparities in clinical outcomes between Asian and non-Asian participants of the international, Enhanced Control of Hypertension and Thrombolysis Stroke study (ENCHANTED). <b><i>Methods:</i></b> ENCHANTED was a multicenter, prospective, partial-factorial, randomized, open trial of low-dose (0.6 mg/kg) versus standard-dose (0.9 mg/kg) alteplase, and intensive (target systolic blood pressure [SBP] 130–140 mm Hg) or guideline-recommended (&lt;180 mm Hg) BP management, in thrombolysis-eligible AIS patients. Logistic regression models were used to examine the associations with outcomes of death or disability (modified Rankin scale [mRS] scores 2–6), major disability (mRS 3–5), death, and intracranial hemorrhage (ICH), with adjustment prognostic factors, alteplase dose, and mean SBP over 1–24 h. <b><i>Results:</i></b> Among 4,551 thrombolyzed AIS patients (mean age 66.7 years, 37.8% female), there were 65.4% Asians who were younger, fewer female, and with less atrial fibrillation, hypercholesterolemia, premorbid symptoms, and concomitant antihypertensive, antithrombotic and statin treatment, and more prior stroke, compared to non-Asians. Frequencies of hypertension, coronary artery disease, and diabetes mellitus were comparable between groups. Asian patients were less likely to be admitted to an acute stroke unit and receive early mobilization by a therapist or rehabilitation but more likely to receive intensive care. There were no significant differences between Asians and non-Asians in functional outcome (defined by mRS scores 2–6 or 3–5; adjusted odds ratio [OR] 1.00, 95% confidence interval [CI] 0.85–1.19 [<i>p</i> = 0.958] and OR 0.95, 95% CI 0.80–1.13 [<i>p</i> = 0.572], respectively), or death (OR 1.25, 95% CI 0.95–1.65; <i>p</i> = 0.116), despite Asians having greater odds of ICH (OR 1.51, 95% CI 1.23–1.86; <i>p</i> = 0.0001) and neurological deterioration within 24 h (OR 1.58, 95% CI 1.18–2.12; <i>p</i> = 0.002). <b><i>Conclusions:</i></b> Within the context of an international clinical trial of thrombolyzed AIS patients, demography, risk factors, management, and odds of early neurological deterioration and ICH, all differ between Asian and non-Asian participants. However, patterns of functional recovery are similar between these major regional groups.
DOI: 10.6084/m9.figshare.22100318.v2
title: Transcriptome analysis of Escherichia coli (Rgen VS Sgen)

description: Comparing the transcriptomes of gentamicin-sensitive and -resistant <em>Escherichia coli</em>
DOI: 10.17632/bfrkmvwmc8
title: Rough Topography and Fast Rossby Waves

description: Models and Data generated in support of GRL - 'Rough Topography and Rossby Waves'

Matlab code to generate modeled Rossby Waves can be found in 'EXPERIMENTS'.
Compiled diagnostics, and figure generation code is found in 'n3_new'.
DOI: 10.17632/c8v5hv9byp
title: Data for: Scalability Model for the LOFAR Direction Independent Pipeline

description: Run times of the LOFAR prefactor pipeline obtained by scaling the Number of CPUs, Data size and skymodel size. The prefactor version used for this data was https://github.com/apmechev/prefactor/commit/da4ac885bce9b24e604c9aac6bf649992065326f
DOI: 10.17632/cjw9bx9ygm
title: Data and margin calculation

description: Your skin or mine: ensuring the viability of a Central Counterparty - The file contains the detailed steps of the simulation that can be found in the article
DOI: 10.17632/39nhpc85kz
title: The 3D Neural Network for improving radar-rainfall estimation in monsoon climate

description: Weather radar can offer synoptic measurement at a higher temporal and spatial resolution to extract the rain information. Rainfall can be inverted from the radar reflectivity using the power-law relation to ground rain gauge measurement. The relationship known as Z-R model has been established in many variants but the uncertainty from the sampling bias and the Z-R variability of single-polarization radar observation on monsoon rain becomes subject to research. The inconsistence of the Z-R model exemplifies the main disadvantages of radar rainfall estimation. Previously proposed universal Z-R models are inadequate to be applied for heterogenous rain intensity during monsoon seasons . Studies on the accuracy of Z-R model are lacking for many reasons such as complex radar data structure, requires a large data storage and is very expensive when used for long-term observations. Radar reflectivity data was collected by the S-band single-horizontal polarization Doppler radar at Kota Bahru, Kelantan and the data is managed by Malaysia Meteorological Department (MMD). The observation covers radial measurement from 50 to 250 km radii. The reflectivity data represents the return signal sampled in 10 minutes and at position within 2-km altitude from the ground which was generated from the lowest scanning angle of 0.7 degree. Such setup would reduce the ground clutter effect which is typically pronounced in the signal received close to the radar antenna providing reliable rainfall information near to the surface and also minimizing the temporal uncertainty in the Constant Plan Position Indicator (CAPPI). Calibration through the threshold log receiver of signal-to-noise ratio (LOG) and the Doppler channel clutter-to-signal ratio (CSR) were applied in pre-processing for minimizing the uncertainties formed by the beam blockage, ground clutter, and during instrument calibration (VAISALA 2016). The radar data conversion from SIGMET to Netcdf was applied through Python Atmospheric Radiation Measurement (ARM) Radar Toolkit (Py-ART). Tipping bucket rain gauges provide rain intensity at a volumetric resolution of 0.2 mm in 1-hour resolution, organised by the Department of Irrigation and Drainage (DID). For this study, there are 58 gauges involved in the 200-km radar observation range. These studies reported that 50 gauges have experienced more than 10% of data void and 41 gauges were working in homogenous fashion while the rest of gauges were doubtful. The digital elevation model (DEM) data is a product of The Shuttle Radar Topography Mission (SRTM) with 30 meters (1 arc-second) pixel spacing and was used for altitude correction of each rain gauge. The DEM products have been corrected on the void pixels they can be downloaded from the U.S. Geological Survey (USGS) website. Reflectivity and rain gauge data are obtained during the wet season of the northeast monsoon from 2013 to 2015 (January, February, March, September, October, November and December).
DOI: 10.17632/4cpkx3c66b
title: Transthyretin mutation and cardiac amyloidosis

description: a novel transthyretin mutation D39Y in a cardiac amyloidosis patient and its biochemical characterizations.
DOI: 10.17632/7vpm3tw4nj
title: Psychological flexibility and professional quality of life among medical practitioners in a tertiary care hospital in South India: An observational study

description: This study is a cross-sectional, hospital-based observational study conducted from July 2019 to March 2020 at Kasturba Hospital of Kasturba Medical College, Manipal, a tertiary care centre in Udupi district of Karnataka state in India. The sample consisted of medical practitioners working in various clinical branches of medicine of Kasturba Hospital, Manipal, with a minimum of one year of experience. Convenience sampling was used. Written informed consent was obtained from all participants. The sample size was calculated using the formula for statistically significant correlation coefficient and it was calculated as185. Participants’ age, gender and work experience details were documented in a proforma. Psychological flexibility was measured using Acceptance and action questionnaire-II (AAQ-II; Bond et al, 2011). Professional Quality of Life Scale Version 5 (ProQol 5; Stamm, 2010) was used to measure compassion satisfaction (CS), burnout (BO) and secondary traumatic stress (STS) among participants. The collected data was analyzed using IBM Statistical Package for Social Sciences (SPSS) statistics for Windows, Version 25 (IBM Corp, Armonk, NY, USA). Descriptive statistics were used to summarize the data. Mean and standard deviation (SD) were used for continuous data. Group differences across gender for continuous variables were examined using an independent t-test and P values less than 0.05 were considered significant. To establish the relationship between the variables Pearson’s’ correlation test was used. The research hypothesis stated was that there would be no relationship between psychological flexibility and 1) compassion satisfaction, 2) burnout and 3) secondary traumatic stress among medical practitioners. Out of the 185 that could complete the study, it included 70 females and 115 males. Mean age of the sample was 37.31 years. In terms of years of work experience, 149 doctors had less than 20 years of experience and 36 had more than 20 years of experience. Mean scores of acceptance and action questionnaire-II and professional quality of life scale version 5 were analysed. Compassion Satisfaction had a mean score of 35.89, Burnout has a mean score of 24.97, Secondary Traumatic Stress had a mean score of 20.43 and Psychological Inflexibility had a mean score of 15.69. The result of Pearson’s correlation showed the relationship between compassion satisfaction and psychological inflexibility was not significantly correlated. The relationship between burnout and psychological inflexibility is significantly and strongly positively correlated. The relationship between secondary traumatic stress and psychological inflexibility is significantly and strongly positively correlated. Using a t-test, it was shown that compassion satisfaction was relatively higher for females and burnout was relatively higher in males.
DOI: 10.17632/955fc28bxt
title: Appendix for GEOCHIMICA ET COSMOCHIMICA ACTA

description: The supplementary research data include detailed major element, trace element, and sulfur isotope data, as well as their standard information.
DOI: 10.17632/tws6skpnfv
title: Brain Endurance Training

description: We aimed to analyze the effect of brain endurance training on maximum oxygen consumption (VO2máx), time-to-exhaustion, and inhibitory control in amateur trained runners. We employed a mixed experimental design, with the group as the between-participant factor and time as the within-participant factor.
DOI: 10.17632/4r6ydm6vgs
title: Fruit-bats adjust their decision process according to environmental dynamics

description: Fruit-bats adjust their decision process according to environmental dynamics- simulations data
DOI: 10.17632/r6f44z6ycf
title: Dataset of evaluation metrics for journalistic texts EN/SK

description: The dataset contains automatic metrics calculated for English journalistic texts that where translated into Slovak language using four different machine translation systems (Google Translate Statistical Machine Translation, Google Translate Neural Machine Translation, MT@EC Statistical Machine Translation, E-Translation Neural Machine Translation). The automatic metrics are methods and techniques used for automated evaluation of the quality of machine translation. The dataset contains values for each machine translation system.
DOI: 10.6084/m9.figshare.16918061.v1
title: LsrB, the hub of ABC transporters involved in the membrane damage mechanisms of heavy ion irradiation in <i>Escherichia coli</i>

description: Ionizing radiation, especially heavy ion (HI) beams, has been widely used in biology and medicine. However, the mechanism of membrane damage by such radiation remains primarily uncharacterized. Transcriptomic profiles of <i>Escherichia coli</i> (<i>E. coli</i>) treated with HI illustrated the response mechanisms of the membrane, mainly ABC transporters, related genes regulated by antibiotics treatment through enrichment analyses of GO and KEGG. The networks of protein–protein interactions indicated that LsrB was the crucial one among the ABC transporters specially regulated by HI through the calculation of plugins MCODE and cytoHubba of Cytoscape. Finally, the expression pattern, GO/KEGG enrichment terms, and the interaction between nine LuxS/AI-2 quorum sensing system members were investigated. Above all, results suggested that HI might perform membrane damage through regulated material transport, inhibited LuxS/AI-2 system, finally impeded biofilm formation. This work provides further evidence for the role of ABC transporters, especially LsrB, in membrane damage of <i>E. coli</i> to HI. It will provide new strategies for improving the precise application of HI.
DOI: 10.17632/ym2p8x7hr5
title: Other species’ alarm calls evoke a predator-specific search Iimage in birds. Suzuki

description: Data and R code for Figure 2.
DOI: 10.17632/smhwct443j
title: mRNA vaccination in octogenarian nuns 15 and 20 months after recovery from COVID-19 elicits robust immune and antibody responses that include Omicron

description: Immune transcriptome, antibody repertoire, anti-IgG and neutralizing antibody levels to SARS-CoV-2 spike protein and cytokine levels in 16 nuns (median 81 years) that had received the BNT162b2 mRNA vaccine 15 and 20 months after recovering from COVID-19 and in 5 previously infected nuns (median 86 years) that had received two doses 10 months after their infection in comparison to 14 naïve persons (median 58 years) and 5 naïve nuns (median 73 years) receiving two doses.
DOI: 10.17632/xfdghmkxnr
title: Data for: Magnesium isotope fractionation during magmatic differentiation in the lower continental crust

description: Raw data in the manuscript (and the supplementary document) by Ying Wei to be published by Chemical Geology.
DOI: 10.17632/5698gx9d4c
title: symptoms of depression/people with obesity (2019-2021)

description: Dataset corresponds a 3-year analysis of ENDES (National Demographic and Health Survey) carried out in Peru. A national representative survey with two-stage sampling designed by the Instituto Nacional de Estadistica e Informatica (INEI, spanish) from Lima-Perú.  Information and datasets are freely available in: http://webinei.inei.gob.pe/anda_inei/index.php/catalog
DOI: 10.6084/m9.figshare.24424618.v1
title: Data and code for: Plant physical defenses contribute to a latitudinal gradient in resistance to insect herbivory within a widespread perennial grass

description: Herbivore pressure can vary across a species’ range, resulting in different defensive strategies. If herbivory is greater at lower latitudes, plants may be better defended there, potentially driving a latitudinal gradient in defense. However, relationships that manifest across the entire range of a species may be confounded by differences occurring within genetic subpopulations, which may obscure the drivers of these latitudinal gradients. To address this, we grew plants of the widespread perennial grass <i>Panicum virgatum</i><i> </i>in a common garden that included genotypes from three genetic subpopulations spanning an 18.5° latitudinal gradient. We then assessed defensive strategies of these plants by measuring two physical resistance traits—leaf mass per area (LMA) and leaf ash, a proxy for silica—and multiple measures of herbivory by caterpillars of the generalist herbivore fall armyworm (<i>Spodoptera frugiperda</i>).
DOI: 10.17632/yb65m4n55d
title: Data for: Magnetic stomatocyte-like nanomotor as photosensitizer carrier for photodynamic therapy based cancer treatment

description: The data exibited the improvement of magnetic stomatocyte-like nanomotor in photodynamic therapy for cancer treatment. All the data including cellular uptake and cytotoxicity, magnetic resonance imaging, fluorescence imaging showed the magnetic character of the magnetic stomatocyte-like nanomotor mentioned in the manuscript. Furthermore, other data including UV-visible spectroscopy and laser scanning confocal microscopy showed the enhancement of drugs in photodynamic therapy.
DOI: 10.17632/5p49gjkym5
title: Treatment Outcomes of Scleroderma with Janus Kinase Inhibitors: A Systematic Review

description: Scleroderma is a connective tissue disorder characterized by hardening and thickening of the skin. Initial treatment involves topical and systemic corticosteroid therapies, with immunosuppressive therapy in severe and refractory cases, although none are curative and outcomes are often poor. This review evaluates the efficacy and safety of novel Janus Kinase inhibitors (JAKi) therapy use in patients with cutaneous scleroderma.
DOI: 10.5281/zenodo.15313886
title: Variations in the temperature response of photosynthesis among nine common tree species planted in Singapore

description: Raw dataset for the data used for the preprint "Variations in the temperature response of photosynthesis among nine common tree species planted in Singapore" (URL: https://www.biorxiv.org/content/10.1101/2024.10.19.618612v1).

The CO2 response curves of nine tropical tree species under five temperatures (30-34°C).
DOI: 10.5281/zenodo.15313887
title: Variations in the temperature response of photosynthesis among nine common tree species planted in Singapore

description: Raw dataset for the data used for the preprint "Variations in the temperature response of photosynthesis among nine common tree species planted in Singapore" (URL: https://www.biorxiv.org/content/10.1101/2024.10.19.618612v1).

The CO2 response curves of nine tropical tree species under five temperatures (30-34°C).
DOI: 10.17632/thjzhzdpvc
title: Pairwise screening of viral-bacterial co-infections in vitro reveals molecular interaction points that affect pathogen proliferation and host cell viability

description: Abstract
The broadening of accessible methodologies has enabled mechanistic insights into single-pathogen infections, yet the molecular mechanisms underlying co-infections remain largely elusive, despite their clinical frequency and relevance, generally exacerbating symptom severity and fatality. Here, we describe an unbiased in vitro screening of pairwise co-infections in a murine macrophage model, quantifying pathogen proliferation and host cell death in parallel over time. The screen revealed that the majority of interactions are antagonistic for both metrics, highlighting general patterns depending on the pathogen virulence strategy. We subsequently decipher two distinct molecular interaction points: Firstly, murine Adenovirus 3 modifies ASC-dependent inflammasome responses in murine macrophages, altering host cell death and cytokine production, thereby impacting secondary Salmonella infection. Secondly, murine Adenovirus 2 infection triggers upregulation of Mprip, a crucial mediator of phagocytosis, which in turn causes increased Yersinia uptake, specifically in virus pre-infected bone-marrow-derived macrophages. This work therefore encompasses both a first-of-its-kind systematic assessment of host-pathogen-pathogen interactions, and mechanistic insight into molecular mediators during co-infection.

Content of the Repository
Raw screen runs -- Folder containing the source data (excel-format) for each plate-reader-based replicate of the screen
mAdV2_microscopy -- Folder containing the source images (.czi-format) for the siRNA-knockdown of Mprip and subsequent mAdV2-coinfection, inculding the quantification and analysis
mAdV3_microscopy -- Folder containing the source images (.czi-format) for ASC-speck counting after mAdV3-infection and inflammasome stimulation
Calculation_template.xlsx -- excel-based analysis sheet to calculate cell death, bacterial growth and viral growth from the plate reader data
Quality_Control.xlsx -- summary of replicate Pearson correlations and paired p-value testing to ensure reproducibility or decide for the necessity of a third replicate
Screen_overall_results.xlsx -- Summary of the results of the co-infection screen
Screen_static_summary.xlsx -- Quantification of the dynamic metrics for each of the screening runs (indicated by number and name)
Validation_Bliss_Scores.xlsx -- Summary of the validation of a subset of idetified interactions
mAdV2_FACS_quantification.xlsx -- quantified cell populations (uninfected, singly infected, doubly infected) after mAdV2-co-infection
mAdV2_SILAC.xlsx -- analyzed proteomics data for SILAC labeling during mAdV2 infection (for source files, see proteomeXchange)
mAdV3_SILAC.xlsx -- analyzed proteomics data for SILAC labeling during mAdV3 infection (for source files, see proteomeXchange)
mAdV3_inflammasome_activation.xlsx -- quantification of cell death, cytokine release and ASC-speck-positive cells upon mAdV3-infection and inflammasome stimulation
DOI: 10.17632/v4v7778m5n
title: Sustainability Determinants of NGO Projects in Lebanon

description: The dynamic and changing environment and the critical crisis in Lebanon make it hard for NGOs to survive and
strive. This means that the NGOs should make the right decisions and implement strategies to cope with any
environmental change.
This research paper aims to find the following factors: Staff competency, Institutional democracy, project manager
leadership style, stakeholder involvement, financing impact, environmental impact, and governmental policies that
might influence sustainability. This research paper aims to test the relationship between those factors and
sustainability.
The quantitative method was used to determine this relationship. A questionnaire was designed and created to test
the hypothesis and achieve the research objectives.
The results of this study showed that there is a positive relationship between the factors and sustainability itself.
The financial aspect then stakeholder’s involvement are the most significant factors that influence sustainability in
NGOs in Lebanon. This is followed by staff competence and environmental impact. However, leadership,
institutional democracy, and governmental policies have little impact on sustainability. This shows the importance
of finance and stakeholders’ involvement when it comes to the growth and sustainability of NGOs. International
NGOs in Lebanon must receive and maintain funding to sustain in this changing situation, in addition, stakeholders
should be kept involved in project implementation of activities and plans. International NGOs must create and
implement the right strategies to sustain and continue in these tough times in Lebanon.
DOI: 10.6084/m9.figshare.23664954.v1
title: QTL-MAS-2012.TBV.txt

description: The ture breeding values of all individuals.
DOI: 10.17632/4898ctyf5n
title: paneer curry

description: Data Description for Paneer Curry Classification

1. Overview

This dataset contains over 500 images of paneer curry, classified into good and bad categories. The images were captured using a Redmi Note 8 Pro mobile camera under daylight conditions with a white background to ensure consistent lighting and minimal background noise.

2. Data Collection Process

Sample Selection: Paneer curry samples were collected, ensuring variation in ingredients, cooking techniques, and storage conditions.

Good Paneer Curry: Fresh, properly cooked, with an appealing texture, correct seasoning, and no signs of spoilage.

Bad Paneer Curry: Spoiled, overcooked, undercooked, contaminated, or visually unappealing due to separation, discoloration, or fungal growth.


3. Image Capture Conditions

Device Used: Redmi Note 8 Pro

Lighting: Natural daylight for consistency

Background: White to enhance contrast and visibility

Angle: Standardized close-up shots to highlight texture, color, and consistency


4. Data Distribution

Good Paneer Curry: ~50% of images

Bad Paneer Curry: ~50% of images

Resolution: High-quality images for better classification accuracy


5. Applications

Automated food quality detection

Food industry quality control

Machine learning model training for visual classification


This dataset is suitable for developing AI-based classification models to distinguish between fresh and spoiled paneer curry.