cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21581236
title: Size eyes code from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: R code for the eye size analysis
DOI: 10.6084/m9.figshare.21581236.v1
title: Size eyes code from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: R code for the eye size analysis
DOI: 10.6084/m9.figshare.21581239.v1
title: All trees Bayesian analysis 2.2 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Trees from Bayesian analysis dataset 2 run 2
DOI: 10.6084/m9.figshare.21581242
title: Morphospace dataset from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Dataset with species and references morphospace
DOI: 10.6084/m9.figshare.21581242.v1
title: Morphospace dataset from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Dataset with species and references morphospace
DOI: 10.6084/m9.figshare.21581239
title: All trees Bayesian analysis 2.2 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Trees from Bayesian analysis dataset 2 run 2
DOI: 10.6084/m9.figshare.21581245
title: All trees Bayesian analysis 2.1 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Trees from Bayesian analysis dataset 2 run 1
DOI: 10.6084/m9.figshare.21581245.v1
title: All trees Bayesian analysis 2.1 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Trees from Bayesian analysis dataset 2 run 1
DOI: 10.6084/m9.figshare.21581251.v1
title: All trees Bayesian analysis 1.1 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Trees from Bayesian analysis dataset 1 run 1
DOI: 10.6084/m9.figshare.21581251
title: All trees Bayesian analysis 1.1 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Trees from Bayesian analysis dataset 1 run 1
DOI: 10.6084/m9.figshare.21581254
title: Phylogenetic dataset 2 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Character matrix for phylogenetic analysis, dataset2
DOI: 10.6084/m9.figshare.21581254.v1
title: Phylogenetic dataset 2 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Character matrix for phylogenetic analysis, dataset2
DOI: 10.6084/m9.figshare.21581257
title: Shapes morphospace from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Shapes saved as a Coo file
DOI: 10.6084/m9.figshare.21581257.v1
title: Shapes morphospace from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Shapes saved as a Coo file
DOI: 10.6084/m9.figshare.21581260
title: Treespace code from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: R code for the treespace analysis
DOI: 10.6084/m9.figshare.21581263
title: Tuzoia_leg measuremetns from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: The origin of mandibulates, the hyperdiverse arthropod group that includes pancrustaceans and myriapods, dates back to the Cambrian. Bivalved arthropod groups such as hymenocarines have been argued to be early mandibulates, but many species are still poorly known, and their affinities remain uncertain. One of the most common and globally distributed Cambrian bivalved arthropods is <i>Tuzoia</i>. Originally described in 1912 from the Burgess Shale based on isolated carapaces, its full anatomy has remained largely unknown. Here, we describe new specimens of <i>Tuzoia</i> from the Canadian Burgess Shale (Wuliuan, Cambrian) showcasing exceptionally preserved soft tissues, allowing for the first comprehensive reconstruction of its anatomy, ecology and evolutionary affinities. The head bears antennae and differentiated cephalic appendages. The body is divided into a cephalothorax and a homonomous trunk bearing <i>ca</i> 10 pairs of legs with heptopodomerous endopods and enlarged basipods, and two pairs of caudal rami form a tail fan. These traits suggest that <i>Tuzoia</i> swam along the seafloor and used its spinose legs for predation or scavenging. <i>Tuzoia</i> is retrieved by a Bayesian phylogenetic analysis as an early mandibulate hymenocarine lineage, exemplifying the rapid diversification of this group in open marine environments during the Cambrian Explosion.
DOI: 10.6084/m9.figshare.21581263.v1
title: Tuzoia_leg measuremetns from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: The origin of mandibulates, the hyperdiverse arthropod group that includes pancrustaceans and myriapods, dates back to the Cambrian. Bivalved arthropod groups such as hymenocarines have been argued to be early mandibulates, but many species are still poorly known, and their affinities remain uncertain. One of the most common and globally distributed Cambrian bivalved arthropods is <i>Tuzoia</i>. Originally described in 1912 from the Burgess Shale based on isolated carapaces, its full anatomy has remained largely unknown. Here, we describe new specimens of <i>Tuzoia</i> from the Canadian Burgess Shale (Wuliuan, Cambrian) showcasing exceptionally preserved soft tissues, allowing for the first comprehensive reconstruction of its anatomy, ecology and evolutionary affinities. The head bears antennae and differentiated cephalic appendages. The body is divided into a cephalothorax and a homonomous trunk bearing <i>ca</i> 10 pairs of legs with heptopodomerous endopods and enlarged basipods, and two pairs of caudal rami form a tail fan. These traits suggest that <i>Tuzoia</i> swam along the seafloor and used its spinose legs for predation or scavenging. <i>Tuzoia</i> is retrieved by a Bayesian phylogenetic analysis as an early mandibulate hymenocarine lineage, exemplifying the rapid diversification of this group in open marine environments during the Cambrian Explosion.
DOI: 10.6084/m9.figshare.21581269
title: Phylogenetic dataset 1 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Character matrix for phylogenetic analysis, dataset1
DOI: 10.6084/m9.figshare.21581269.v1
title: Phylogenetic dataset 1 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Character matrix for phylogenetic analysis, dataset1
DOI: 10.6084/m9.figshare.21581260.v1
title: Treespace code from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: R code for the treespace analysis
DOI: 10.6084/m9.figshare.21581266
title: Morphospace code from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: R code to generate morphsopace
DOI: 10.6084/m9.figshare.21581266.v1
title: Morphospace code from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: R code to generate morphsopace
DOI: 10.6084/m9.figshare.21581275
title: Size eyes dataset from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Dataset with species and references eye size
DOI: 10.6084/m9.figshare.21581272
title: All trees Bayesian analysis 1.2 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Trees from Bayesian analysis dataset 1 run 2
DOI: 10.6084/m9.figshare.21581278.v1
title: Phylogenetic results dataset 1 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Phylogenetic tree, dataset1
DOI: 10.6084/m9.figshare.21581275.v1
title: Size eyes dataset from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Dataset with species and references eye size
DOI: 10.6084/m9.figshare.21581278
title: Phylogenetic results dataset 1 from The problematic Cambrian arthropod <i>Tuzoia</i> and the origin of mandibulates revisited

description: Phylogenetic tree, dataset1
DOI: 10.21227/af5p-mp40
title: Simulated and phantom colon data for 6-dof camera pose estimation

description: Since narrow imaging and texture scarceness issues results to high missing rate  for gastrointestinal disease in clinical colonoscopy, the pose and depth estimation is required to improve the quality of diagnosis.    Some unsupervised methods have been proposed for this purpose. However, these methods often suffer from the performance degradation for a long and curved trajectory because of the structural constraints. In this paper, we propose an innovative key points encoding Transformer (KPEformer) for pose estimation in long and curved colonoscopy trajectory. Specifically, a light weight convolution and attention module is proposed to encode the features of latent variables for key points. Two loss functions for confidence and repeatability of key points are designed to enhance the reliabilty of output information. In addition, we propose a more adequate colon dataset which contains synthetic    and phantom to remedy the deficiency of existing dataset. Extensive experiments on our proposed synthetic dataset and phantom dataset demonstrate the state-of-the-art performance of our method.
DOI: 10.5281/zenodo.7313594
title: Dataset related to the article: "Anxiety as a risk factor for postoperative complications after colorectal surgery: new area for perioperative optimization"

description: This record contains data related to the article: "Anxiety as a risk factor for postoperative complications after colorectal surgery: new area for perioperative optimization" <em>No abstract available</em>
DOI: 10.5281/zenodo.7313595
title: Dataset related to the article: "Anxiety as a risk factor for postoperative complications after colorectal surgery: new area for perioperative optimization"

description: This record contains data related to the article: "Anxiety as a risk factor for postoperative complications after colorectal surgery: new area for perioperative optimization" <em>No abstract available</em>
DOI: 10.5517/ccdc.csd.cc2909c0
title: CCDC 2115451: Experimental Crystal Structure Determination

description: Related Article: HY Z|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6826423
title: Dyadic encounter unfamiliar female pairs over 2 days – 16p11.2 Del mouse strain – WT-WT - 5195_5167

description: We evaluated the social interactions and communication between unfamiliar individuals in pairs. For these recordings of social behaviour and ultrasonic communication, we focused on pairs of individuals since we currently cannot identify the emitter of USVs when animals were interacting closely. Therefore, we recorded undisturbed dyadic interactions between two unfamiliar individuals (from two different housing cages) of the same age (14-20 weeks of age) and genotype for 47h (two days and nights). For that purpose, we coupled the Live Mouse Tracker system (plugin 931) with one CM16/CMPA microphone (Avisoft Bioacoustics, Glienecke, Germany) connected to the Avisoft Ultrasound Gate 416 (300 kHz sampling rate, 16-bit format; trigger: level of this channel; pre-trigger: 1 s; hold time: 1 s; duration &gt; 0.005 s; trigger event: 2 % energy in 25-125 kHz with entropy &lt; 50%; Avisoft Bioacoustics, Glienecke, Germany). LMT and Avisoft systems were synchronised based on the protocol described in (de Chaumont et al., 2021). Each upload includes the sqlite database from LMT (processed, with USV synchronised) and a zip file with all USVs sequences automatically recorded by Avisoft.
DOI: 10.5281/zenodo.6826424
title: Dyadic encounter unfamiliar female pairs over 2 days – 16p11.2 Del mouse strain – WT-WT - 5195_5167

description: We evaluated the social interactions and communication between unfamiliar individuals in pairs. For these recordings of social behaviour and ultrasonic communication, we focused on pairs of individuals since we currently cannot identify the emitter of USVs when animals were interacting closely. Therefore, we recorded undisturbed dyadic interactions between two unfamiliar individuals (from two different housing cages) of the same age (14-20 weeks of age) and genotype for 47h (two days and nights). For that purpose, we coupled the Live Mouse Tracker system (plugin 931) with one CM16/CMPA microphone (Avisoft Bioacoustics, Glienecke, Germany) connected to the Avisoft Ultrasound Gate 416 (300 kHz sampling rate, 16-bit format; trigger: level of this channel; pre-trigger: 1 s; hold time: 1 s; duration &gt; 0.005 s; trigger event: 2 % energy in 25-125 kHz with entropy &lt; 50%; Avisoft Bioacoustics, Glienecke, Germany). LMT and Avisoft systems were synchronised based on the protocol described in (de Chaumont et al., 2021). Each upload includes the sqlite database from LMT (processed, with USV synchronised) and a zip file with all USVs sequences automatically recorded by Avisoft.
DOI: 10.5281/zenodo.7409521
title: Dyadic encounter unfamiliar female pairs over 2 days – 16p11.2 Del mouse strain – WT-WT - 5195_5167

description: We evaluated the social interactions and communication between unfamiliar individuals in pairs. For these recordings of social behaviour and ultrasonic communication, we focused on pairs of individuals since we currently cannot identify the emitter of USVs when animals were interacting closely. Therefore, we recorded undisturbed dyadic interactions between two unfamiliar individuals (from two different housing cages) of the same age (14-20 weeks of age) and genotype for 47h (two days and nights). For that purpose, we coupled the Live Mouse Tracker system (plugin 931) with one CM16/CMPA microphone (Avisoft Bioacoustics, Glienecke, Germany) connected to the Avisoft Ultrasound Gate 416 (300 kHz sampling rate, 16-bit format; trigger: level of this channel; pre-trigger: 1 s; hold time: 1 s; duration &gt; 0.005 s; trigger event: 2 % energy in 25-125 kHz with entropy &lt; 50%; Avisoft Bioacoustics, Glienecke, Germany). LMT and Avisoft systems were synchronised based on the protocol described in (de Chaumont et al., 2021). Each upload includes the sqlite database from LMT (processed, with USV synchronised) and a zip file with all USVs sequences automatically recorded by Avisoft.
DOI: 10.6084/m9.figshare.21688259
title: Reactiontime_dataset_for_share

description: This is the dataset in the excel format of a cross-sectional study that included 64 graduate students who used a smartphone from the University of Phayao. They were randomly selected from strata based on city, age, and gender. Adolescents aged 18 to 22 were eligible for this study if they could converse adequately and had used smartphones for social media every day for at least a year before participation
DOI: 10.18419/darus-2321/1
title: uapca-05.00.svg

description: :unav
DOI: 10.18419/darus-2321/2
title: uapca-00.25.svg

description: :unav
DOI: 10.18419/darus-2321/3
title: uapca-00.00.svg

description: :unav
DOI: 10.18419/darus-2321/4
title: README.md

description: :unav
DOI: 10.18419/darus-2321/5
title: uapca-01.50.svg

description: :unav
DOI: 10.18419/darus-2321/6
title: uapca-02.75.svg

description: :unav
DOI: 10.18419/darus-2321/7
title: uapca-0.8.0.tar.gz

description: :unav
DOI: 10.18419/darus-2321/8
title: LICENSE.txt

description: :unav
DOI: 10.18419/darus-2321/9
title: uapca-02.00.svg

description: :unav
DOI: 10.18419/darus-2321/10
title: uapca-07.00.svg

description: :unav
DOI: 10.18419/darus-2321/11
title: uapca-03.50.svg

description: :unav
DOI: 10.18419/darus-2321/12
title: uapca-00.75.svg

description: :unav
DOI: 10.18419/darus-2321/13
title: uapca-01.00.svg

description: :unav
DOI: 10.18419/darus-2321/14
title: LICENSE.txt

description: :unav
DOI: 10.18419/darus-2321/15
title: uapca-00.50.svg

description: :unav
DOI: 10.18419/darus-2321/16
title: uapca-10.00.svg

description: :unav
DOI: 10.18419/darus-2321/17
title: uapca-14.00.svg

description: :unav
DOI: 10.18419/darus-2321
title: Replication Data for: Uncertainty-Aware Principal Component Analysis

description: This dataset contains the source code for uncertainty-aware principal component analysis (UA-PCA) and a series of images that show dimensionality reduction plots created with UA-PCA. The software is a JavaScript library for performing principal component analysis and dimensionality reduction on datasets consisting of multivariate probability distributions. Each plot of the image series used UA-PCA to project a dataset consisting of multivariate normal distributions. The covariance matrices of the dataset instances were scaled with different factors resulting in different UA-PCA projections. The projected probability distributions are displayed using isolines of their probability density functions. As the scaling value increases, the projection changes, showing the sensitivity of UA-PCA to changes in variance.
DOI: 10.5281/zenodo.7409686
title: Supplementary Data for 'A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA).'

description: Supplementary Data for 'Castoldi, M., Schmidt, S., Benes, V., Noerholm, M., Kulozik, A.E., Hentze, M.W. and Muckenthaler, M.U., 2006. A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA). <em>Rna</em>, <em>12</em>(5), pp.913-920.'
description: {"references": ["Castoldi, M., Schmidt, S., Benes, V., Noerholm, M., Kulozik, A.E., Hentze, M.W. and Muckenthaler, M.U., 2006. A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA). Rna, 12(5), pp.913-920."]}
DOI: 10.5281/zenodo.7409685
title: Supplementary Data for 'A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA).'

description: Supplementary Data for 'Castoldi, M., Schmidt, S., Benes, V., Noerholm, M., Kulozik, A.E., Hentze, M.W. and Muckenthaler, M.U., 2006. A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA). <em>Rna</em>, <em>12</em>(5), pp.913-920.'
description: {"references": ["Castoldi, M., Schmidt, S., Benes, V., Noerholm, M., Kulozik, A.E., Hentze, M.W. and Muckenthaler, M.U., 2006. A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA). Rna, 12(5), pp.913-920."]}
DOI: 10.34740/kaggle/dsv/4680383
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.7409699
title: Atmospheric microbiome in Israel, Eastern Mediterranean

description: Processes influencing the atmospheric transport of airborne bacterial communities are poorly understood. Here, we report quantitative evidence of the key factors influencing the atmospheric transport of airborne bacterial communities sampled in Israel, Eastern Mediterranean. We extracted DNA and RNA from size-resolved aerosols sampled from air masses of different origins, followed by qPCR and high-throughput amplicon sequencing of 16S ribosomal RNA gene and transcripts. We find airborne bacterial community composition varied with air mass origin and particle size. Bacterial abundance, alpha diversity and species richness were higher in terrestrially-influenced air masses than marine-influenced air masses, and were also high in the coarse particle fraction (3.0 to 10.0 µm) than the fine fraction (0.49 to 1.5 µm). This suggests airborne bacteria were mostly associated with mineral dust or transported as cell aggregates. High abundances of rRNA from human, animal and plant pathogen taxa indicate potential ecological impacts of atmospheric bacterial transport.
DOI: 10.5281/zenodo.7409698
title: Atmospheric microbiome in Israel, Eastern Mediterranean

description: Processes influencing the atmospheric transport of airborne bacterial communities are poorly understood. Here, we report quantitative evidence of the key factors influencing the atmospheric transport of airborne bacterial communities sampled in Israel, Eastern Mediterranean. We extracted DNA and RNA from size-resolved aerosols sampled from air masses of different origins, followed by qPCR and high-throughput amplicon sequencing of 16S ribosomal RNA gene and transcripts. We find airborne bacterial community composition varied with air mass origin and particle size. Bacterial abundance, alpha diversity and species richness were higher in terrestrially-influenced air masses than marine-influenced air masses, and were also high in the coarse particle fraction (3.0 to 10.0 µm) than the fine fraction (0.49 to 1.5 µm). This suggests airborne bacteria were mostly associated with mineral dust or transported as cell aggregates. High abundances of rRNA from human, animal and plant pathogen taxa indicate potential ecological impacts of atmospheric bacterial transport.
DOI: 10.5281/zenodo.6835878
title: ML-ddG-Blaabjerg-et-al

description: Data for paper Blaabjerg et al.
DOI: 10.5281/zenodo.7409727
title: Supplementary Info for 'The molecular circuitry regulating the switch between iron deficiency and overload in mice.'

description: Supplementary Data for Mok, H., Mlodnicka, A.E., Hentze, M.W., Muckenthaler, M. and Schumacher, A., 2006. The molecular crcuitry regulating the switch between iron deficiency and overload in mice. <em>Journal of Biological Chemistry</em>, <em>281</em>(12), pp.7946-7951.
description: {"references": ["Mok, H., Mlodnicka, A.E., Hentze, M.W., Muckenthaler, M. and Schumacher, A., 2006. The molecular circuitry regulating the switch between iron deficiency and overload in mice. Journal of Biological Chemistry, 281(12), pp.7946-7951."]}
DOI: 10.5281/zenodo.7409726
title: Supplementary Info for 'The molecular circuitry regulating the switch between iron deficiency and overload in mice.'

description: Supplementary Data for Mok, H., Mlodnicka, A.E., Hentze, M.W., Muckenthaler, M. and Schumacher, A., 2006. The molecular crcuitry regulating the switch between iron deficiency and overload in mice. <em>Journal of Biological Chemistry</em>, <em>281</em>(12), pp.7946-7951.
description: {"references": ["Mok, H., Mlodnicka, A.E., Hentze, M.W., Muckenthaler, M. and Schumacher, A., 2006. The molecular circuitry regulating the switch between iron deficiency and overload in mice. Journal of Biological Chemistry, 281(12), pp.7946-7951."]}
DOI: 10.5281/zenodo.7409755
title: ML-ddG-Blaabjerg-et-al

description: Data for paper Blaabjerg et al.
DOI: 10.5281/zenodo.6835877
title: ML-ddG-Blaabjerg-et-al

description: Data for paper Blaabjerg et al.
DOI: 10.5281/zenodo.7409662
title: Supplementary Data for 'Altered body iron distribution and microcytosis in mice deficient in iron regulatory protein 2 (IRP2).'

description: Supplementary data for Galy, B., Ferring, D., Minana, B., Bell, O., Janser, H.G., Muckenthaler, M., Schümann, K. and Hentze, M.W., 2005. Altered body iron distribution and microcytosis in mice deficient in iron regulatory protein 2 (IRP2). <em>Blood</em>, <em>106</em>(7), pp.2580-2589.
description: {"references": ["Galy, B., Ferring, D., Minana, B., Bell, O., Janser, H.G., Muckenthaler, M., Sch\u00fcmann, K. and Hentze, M.W., 2005. Altered body iron distribution and microcytosis in mice deficient in iron regulatory protein 2 (IRP2). Blood, 106(7), pp.2580-2589."]}