cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28614746.v1
title: Sequence location of codon 80 and codon 90 undergoing diversifying selection

description: Translated and untranslated CDS sequences in AliView display variation in codon 80 and codon 91, codons undergoing diversifying selection based on MEME analysis.Left figure is a translated CDS sequence of CD4 receptors in 9 primated species. Codon 80, left black box, shows alternate amino acids in P. Paniscus, P. troglodytes, and C. pygerythrus, than compared to the other primate species. The three different amino acids, alanine (A), valine (V), and isoleucine (I), are nonpolar. Codon 91, left black box, shows four different amino acids in the 9 species. Each amino acid at codon 91, asparagine (N), cysteine (C), histidine (H), have polar side chains. Right figure is a nucleotide sequence of CD4 receptor in 9 primate species. Left black black box displays show nucleotides 238-240, to represent codon 80. 6 primate species have the codon GCT at this site, 2 species have GTT, and 1 species has ATT. Right black box outlines nucleotides 271-273, to represent codon 91. 4 species have codon AAC, 4 species have codon TGC, and 1 species has codon CAC at this site. Manually inputed boxes to focus on the amino acids and nucleotides that correspond to codon 80 and codon 91.
DOI: 10.6084/m9.figshare.20411082.v3
title: A chromosome-scale genome assembly of Quercus gilva: Insights into the evolution of Quercus section Cyclobalanopsis (Fagaceae)

description: <em>Quercus gilva</em> is an ecologically and economically important species of <em>Quercus</em> section <em>Cyclobalanopsis</em> and is a dominant species in evergreen broad-leaved forests in subtropical regions of East Asia. In the present study, we reported a high-quality chromosome-scale genome assembly of <em>Q. gilva</em>, the first reference genome for section <em>Cyclobalanopsis</em>, using the combination of Illumina and PacBio sequencing with Hi-C technologies. The assembled genome size of <em>Q. gilva</em> was 889.71 Mb, with a contig number of 773 and a contig N50 of 28.32 Mb. Hi-C scaffolding anchored 859.07 Mb contigs (96.54% of the assembled genome) onto 12 pseudochromosomes, with a scaffold N50 of 70.35 Mb. A combination of de novo, homology-based, and transcript-based predictions predicted a final set of 36,442 protein-coding genes distributed on 12 pseudochromosomes, and 97.73% of them were functionally annotated. A total of 535.64 Mb (60.20%) of repetitive sequences were identified. Genome evolution analysis revealed that <em>Q. gilva</em> was most closely related to <em>Q. suber</em> and they diverged at 40.35 Ma, and <em>Q. gilva</em> did not experience species-specific whole-genome duplication in addition to the ancient <em>gamma</em> whole-genome triplication event shared by core eudicot plants. <em>Q. gilva</em> underwent considerable gene family expansion and contraction, with 598 expanded and 6,509 contracted gene families detected. The first chromosome-scale genome of<em> Q. gilva</em> will promote its germplasm conservation and genetic improvement and provide essential resources for better studying the evolution of <em>Quercus </em>section <em>Cyclobalanopsis</em>.
DOI: 10.6084/m9.figshare.21502296.v3
title: USA_TILE_POPULATION

description: Data for Good Meta. High resolution population estimates for the United States. Includes total population, men, women, women of reproductive age, elderly, youth, and children subgroups. Creative Commons Attribute International License. <br> To facilitate population data retrieval across scale, we segment spatial coverage into 130 equal sized tiles. GPU enabled spatial join via RapidsAI was employed to assign population information with each vector tile. <br> <strong>Reference</strong>: Facebook Connectivity Lab and Center for International Earth Science Information Network - CIESIN - Columbia University. 2016. High Resolution Settlement Layer (HRSL). Source imagery for HRSL © 2016 DigitalGlobe. Accessed 4 November 2022.
DOI: 10.6084/m9.figshare.16566135.v1
title: 2016 Mindfulness Stats Complete.xlsx

description: This pilot study employed a single group quasi-experimental, simultaneous mixed-methods design by utilizing quantitative pre and post testing paired with a written qualitative post-assessment. Thirteen (13) healthcare practitioners employed at a community outpatient mental health clinic in Amherst, Nova Scotia were recruited for the study (table 1). Convenience and snowball sampling were used to recruit participants. The Mindfulness Awareness Practices (MAPs) program is a 6-week, validated protocol delivered by a trained instructor. The intervention has demonstrated usefulness in reducing distress in clinical populations (26, 27). Participants completed the MAPs 6-week course, including weekly 90-minute facilitated group classes. Participants were encouraged to complete and record ‘homework’ activities, including guided meditation practice. The program was delivered on-site at the clinic during the participants’ regular workday. The Five Facet Mindfulness Questionnaire (FFMQ), first proposed in 2006 is a robust, 39-item self-report, Likert type scale measuring 5 correlates of mindfulness; observing, describing, acting with awareness, non-judging and non-reacting (28, 29). The scale exhibits reliable construct validity across facets (30). The Perceived Stress Scale (10) (PSS) is a widely used 10-item, self-report questionnaire designed to measure individual stress, demonstrating high internal consistency across populations ( 0.82) (31, 32). Participants completed the FFMQ and the PSS prior to the first session (week 1) and post-participation in the protocol (week 6). Qualitative data was obtained using a brief, written questionnaire that allowed for narrative-style feedback from participants, completed post-intervention. The questions were as follows:<i> </i><i>“In what way has the six-week mindfulness training influenced your personal life?”</i><i> </i><i>“In what way has the six-week mindfulness training influenced your clinical practice?”</i> <b>Statistical Analysis</b>FFMQ and PSS scores were set as primary outcome measures. Continuous data from the quantitative questionnaires was entered into SPSS. Paired samples t-tests were then conducted. Statistical significance was assumed at 0.05%. Corresponding<i> Cohen's d</i> values were determined, and effect sizes established. Outcome variables included overall mindfulness, perceived stress and the five FFMQ subscales. Secondary outcome measures sought to explore the relationship between engagement and change in outcome scores, however statistical analysis was impacted by poor response rates. <b>Data Analysis</b>Participants were provided with the two questions stated above, and in turn provided the researchers with written responses. The written responses were transcribed to text and some minor substitutions (e.g., replacing shorthand with full words) were made to aid legibility, with no impact to the meaning of the responses. Thematic analysis was applied to the qualitative data to observe themes that arose across participants’ varying experiences of the program.
DOI: 10.6084/m9.figshare.5446693.v1
title: field data

description: field data
DOI: 10.17632/c5s76mj4bm
title: Mine4.0 - MineCareerDB : A mining career dataset

description: MineCareerDB is a carefully curated dataset intended for mining career analysis, offering a multidimensional perspective on the Benslimane mining site. The dataset is primarily composed of 373 high-resolution images captured using an RGB Camera FC6310 mounted on the DJI Phantom 4 Pro drone. These images provide a detailed visual representation of the mining environment, enabling a comprehensive examination of various aspects related to mining operations.
Along with the images, MineCareerDB contains a vast amount of additional data that can improve the usefulness of the dataset. The dataset comprises point cloud 3D representations of the mining career, which offer a three-dimensional spatial comprehension of the terrain. This information plays a crucial role in volumetric analysis, terrain modeling, and detecting changes over time.
There are various file formats available for the 3D format of a career. These formats include LAS, XYZ, and text. They make it easy to integrate data with different software and tools that professionals and researchers can use in different applications. LAS is used to store point cloud data, while XYZ represents coordinates of points. The text format shows the 3D data in a human-readable way. Additionally, there is a DEM file that contains elevation data for the entire mining area. This file is essential for terrain analysis, allowing for the extraction of elevation profiles, slope calculations, and other geospatial analyses.
In summary, MineCareerDB offers a vast collection of high-quality images, both in high-resolution and 3D representations in various formats, along with a DEM file. This diverse range of data types provides researchers, geospatial analysts, and mining experts with valuable insights into the Benslimane mining industry from multiple angles and dimensions.
DOI: 10.17632/zbngwgtdw5
title: The Proteasome Component PSMD14 Drives Myelomagenesis through a Histone Deubiquitinase Activity

description: The 19S regulatory particle (RP) of the proteasome is emerging as a promising target for the treatment of myeloma that are resistant to bortezomib, a selective inhibitor of the 20S core particle. However, the molecular basis underlying the targeting of the 19S RP for myeloma therapy remains to be elucidated. Here we report that, unexpectedly, the 19S RP component PSMD14 is physically associated with the myeloma driver, NSD2 on chromatin independent of 19S RP. We find that PSMD14 is a histone deubiquitinase acting on H2AK119, and that PSMD14-catalyzed H2AK119 deubiquitination facilitates NSD2-directed H3K36 di-methylation. Integrative genomic and epigenomic analyses reveal that the functional coordination between PSMD14 and NSD2 is associated with transcription activation of a cohort of genes including RELA that are critically involved in myelomagenesis. We show that RELA, in turn, transactivates PSMD14, establishing a positive feedback regulatory loop that explains well the long-reported clinical behaviours of myeloma. Chemical inhibition of PSMD14 sensitizes myeloma cells to bortezomib and confers a synergistic anti-myeloma activity with bortezomib, lenalidomide and dexamethasone. Importantly, the expression of PSMD14 is increasingly elevated as asymptomatic pre-malignant myeloma progresses to multiple myeloma, and its level of expression is inversely correlated with the overall survival and bortezomib-based therapeutic response of myeloma patients. Our study uncovers an unappreciated function of PSMD14 as an epigenetic regulator and a myeloma driver, supporting the pursuit of this proteasome constituent as a therapeutic target to overcome the treatment limitation of myeloma.
DOI: 10.6084/m9.figshare.14069189.v1
title: Sandwich Drilling DAS.pdf

description: The data is acquired after drilling into the specimen and also by performing non-destructive testing. The results can be used to optimize the process of drilling composites in the industry.<br>
DOI: 10.6084/m9.figshare.14198687.v1
title: GUION ENTREVISTAS ESTRUCTURADAS

description: Guion utilizado en las entrevistas estructuradas realizadas a 45 periodistas de la Generación Z, a fin de descubrir sus percepciones sobre el fenómeno de la desinformación.
DOI: 10.6084/m9.figshare.28875959.v1
title: S3 File.

description: Institutional Ethical Committee approval
DOI: 10.17632/6ms58wg4tc
title: Data for: Potential of Geothermal Energy Production from Depleted Gas Fields: A Case Study of Dodan Field, Turkey

description: A monte Carlo simulation for resource assessment of Geothermal energy in Depleted gas field
DOI: 10.17632/gs424fsr8g
title: Value migration network

description: The data contain the daily returns of 499 stocks of the S&P 500 Index that were continuously traded in the US market from  04 Januray 2021 to 31 December 2021, including a total of 252 trading days. Data time series were obtained from Yahoo Finance (http://finance.yahoo.com). The dataset contains the MST-based value migration network. The sector classification of companies and clustering according to the division into communities (using various methods of community detection) and into clusters using the PAM method are also included.
DOI: 10.6084/m9.figshare.14006135.v1
title: Primary GWAS of Urate, IGF-1, Testosterone (male and female)

description: Primary GWAS of Urate, IGF-1, Testosterone (male and female)
DOI: 10.6084/m9.figshare.1581680.v1
title: Supplemental Data

description: fasta file of amino acid sequences used as MASCOT database for protein identification
DOI: 10.6084/m9.figshare.21664022.v1
title: Menelik whole head and shoulder mesh format (SAB)

description: The Menelik head and shoulder mesh model in SAB file format.
DOI: 10.6084/m9.figshare.24944892.v1
title: <i>Sargassum</i> Seawater Viral database (SSVdb)

description: The Sargassum Seawater Viral Database file contains 3963 viral metagenome-assembled genomes (vMAGs). Each line in the file is an N-linked vMAG.
DOI: 10.6084/m9.figshare.26830690.v1
title: Pancreatic endocrinogenesis sn-RNAseq

description: This is the RNA-seq part of the multiome dataset published with "Mapping cells through time and space with moscot". The full data is available via GEO accession code GSE275562.
DOI: 10.17632/265cf556nr
title: Replication Files for Baumgärtner, Zahner (2025)

description: Replication Files for 

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------- Whatever it takes to understand a central banker - Embedding their words using neural networks. -----------
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Contents and Replication Instructions

This repository contains the replication code and dataset for the study. The current version reflects the code and data as of March 13, 2025. We maintain an updated GitHub repository at the following link, where we implement improvements, fix potential issues, and address code optimizations:

https://github.com/martinbaumgaertner/whatever_it_takes

This replication package includes: (i) detailed ReadMe file with clear, step-by-step instructions for replication. (ii) a mapping of scripts to outputs, specifying which scripts generate each figure and table in the paper. (iii) All necessary datasets and source code to fully replicate the analysis, including embedding generation, model training, and final application.


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Code Annotations and System Requirements

The code includes extensive comments for ease of understanding, along with specific guidance and alternative approaches for users without access to high-performance computing (HPC) resources. The replication process has been successfully executed on modern hardware (e.g., a recent MacBook Pro) within approximately a few dozen hours. However, users with less powerful systems may encounter performance limitations. To address this, we have explicitly annotated hardware-related constraints in the code and provided shortcuts, such as the use of pre-trained models, to facilitate replication. Some larger shortcuts (e.g., those used in Section 3.3 for measuring “rhetorical stability”) are not included in this replication package due to file size constraints (several GBs). However, these files are available upon request—please feel free to contact us if needed.
DOI: 10.17632/n66yg8mdzs
title: Capture cross section with quantum diffusion approach

description: A C++ code for calculating the capture of a projectile by target nucleus is described. The code is based on the quantum diffusion model developed for considering collisions of nuclei at energies below and above the Coulomb barrier. The code provides the capture cross sections and other characteristics of reaction as functions of E_{c.m.}. The formalism of the model is briefly described. The code contains the Fortran subroutine to calculate the nucleus–nucleus potential.
DOI: 10.6084/m9.figshare.11784798.v1
title: Additional file 6 of Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

description: Additional file 6: Table S4. 698 a priori candidate genes in the proteinogenic amino acids biosynthesis and degradation pathway.
DOI: 10.17632/k9p9pdm8pb
title: Hedonism and Perceived Risk on Digital Payment

description: This data respondent consist of Promotion, Faciliting condition, Perceived Usefulness, Easy of Use, satisfaction, Perceived Risk.
DOI: 10.17632/kfgk4vng35
title: Data for: Effect of V and Ball Milling Time on Microstructure and Thermal Properties of CoCrCuFeNiVx by Mechanical Alloying
DOI: 10.6084/m9.figshare.12611657.v2
title: In vivo whole-cell recordings_Experienced females

description: In vivo voltage-clamp recordings from auditory cortex of isoflurane-anesthetized experienced females. <br>Attached excel sheet details file names, holding potentials, stimulus set, and notes. <br>Recordings for Schiavo et al. (2020) - Figure 2g-j
DOI: 10.6084/m9.figshare.22710490.v1
title: <strong>Preparing Software Re-Engineering via Freehand Sketches in Virtual Reality</strong> - Online Appendix

description: Online appendix for the paper "<b>Preparing Software Re-Engineering via Freehand Sketches in Virtual Reality</b>" published in the proceedings of the 39th IEE International Conference on Software Maintenance and Evolution (ICSME 2023).
DOI: 10.6084/m9.figshare.25867498.v1
title: Foundation Inference Models for Markov Jump Processes (Models and Data)

description: This are trained models and data used for evaluation for the "Foundation Inference Models for Markov Jump Processes" paper.
DOI: 10.6084/m9.figshare.21656780.v1
title: Towards a Data-Driven Theory of Narrativity NLH

description: Data and code accompanying article: Andrew Piper and Sunyam Bagga, "Towards a data-driven theory of narrativity," New Literary History (2023).
DOI: 10.17632/2b3nsj9p2k
title: Data for: Global patterns of ecologically unequal exchange: implications for sustainability in the 21st century

description: The excel file contains all data used to construct the structural equation models for 2015. This includes data on population, gross national income, biophysical reserves, the technology index, military expenses, net imports of raw material equivalents, embodied energy, land, and labor, and the value added of raw material equivalents exported, as well as that of embodied energy exported, embodied land, and labor.
DOI: 10.6084/m9.figshare.1226580.v1
title: experimental design - raw data

description: Methods: we did our experiment on Oct. 27th. The bowls were left at aproximately 3:00 pm in YorkU's grasslands for 2 hours. Each lane consited of 12 bowls alternating vertically between Y-B-W colours at consistent distances apart for a length of 7 meter. Lanes were a meter apart from each other (horizentally). Bowls were half full with soapy water. The weather condition was as follows: ~10 ◦C, cloudy, breezy, and the ground was wet from rain before. Environment around consisted of tall grass (20-60 cm) plus some golden rods and thistles. The data presented here is raw and will be futher tabled and organized for the formal repot.
DOI: 10.6084/m9.figshare.1419707.v1
title: Table 2. Twelve month prevalence rates of victimisation of patients with depression, substance use disorder and severe mental illness, psychiatric patients overall and the general population.

description: Criminal victimisation prevalence was measured in 300 outpatients living in Amsterdam, The Netherlands. Face-to-face interviews were conducted with outpatients with depressive disorder (n=102), substance use disorder (SUD, n=106) and severe mental illness (SMI, n=92) using a National Crime Victimisation Survey, and compared with a matched general population sample (n=10865). Statistical analyses were conducted using SPSS Statistics for Microsoft Windows, a computer software package for statistical analysis. Between group analyses were conducted using the Pearson Chi-square test for dichotomous variables, and ANOVA for continuous variables, Effect sizes for dichotomous variables were obtained with Cramer’s V test. The Bonferroni Test was used as a post hoc test for continuous variables. For comparison of the patient group with the general population we also used a Pearson Chi-square test. To correct for differences between the two samples, IVM data of the general population was weighed for age, gender, ethnicity, level of education and living area.
DOI: 10.6084/m9.figshare.29094407.v1
title: 8761-24481-1-PB.pdf

description: In today's rapidly evolving educational landscape, there is a growing need to develop an IT infrastructure model that can effectively support web-based learning environments to enhance digital literacy. The proposed model offers a comprehensive framework for educational institutions to integrate digital technologies into their curricula seamlessly. Key elements of the model include essential hardware, user-friendly software, and advanced security measures, each playing a vital role in creating a seamless, secure, and efficient digital learning experience. This study explores the dynamic interactions among these components and their collective influence on fostering a conducive and productive web-based learning environment. By addressing the need for reliable infrastructure, scalable solutions, and robust security protocols, the model provides a holistic approach to improving digital literacy in educational contexts. The research underscores the critical role of a well-structured IT infrastructure in supporting digital education, offering actionable insights and recommendations for implementation. Moreover, it emphasizes that a well-developed IT infrastructure is foundational for the long-term success of web-based learning programs, enabling institutions to meet diverse learner needs, adapt to technological advances, and ensure sustainability in the digital education landscape.
DOI: 10.6084/m9.figshare.9786074.v1
title: C.scutulatus-A SVMP exon annotations on BAC125O12

description: This tab-delimited text file contains the SVMP exon annotations for C. scutulutus-A BAC clone 125O12.