cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/9x2g6dsbtv
title: Bat Echolocation Call Analysis with Deep Learning Models

description: This code project contains a multitude of scripts often required for understanding bat echolocation call data. 

Basic scripts in the data preparation are provided for:
- cleaning audio data
- processing audio data into linear spectrograms or Mel-Frequency-Cepstral-Coefficients (MFCC)
- creating unique IDs for each pair of image and corresponding label

The optimization core contains the following functionalities:
- basic but highly customizable training and validation functions for neural network models
- performance metrics to evaluate models for various tasks, binary and multi-class, respectively
- logger classes to track various values and parameters 

The analysis part is divided into an unsupervised learning approach and a supervised learning approach. 
First, with the help of unsupervised methods like autoencoders and clustering algorithms like UMAP, the datasets can be analysed for general geometric properties.
The convolutional autoencoder is used to learn an efficient representation of the data and feed the UMAP clustering algorithm with highly compressed latent feature vectors for faster convergence. 
The clustering can reveal similarities between specific classes then and guide the further analysis with supervised learning methods by adjusting the composition of classes and dataset sources before deciding to train a supervised neural network model. 
Dataset sources encompass meta data like year/time of measurement and location/position of measurement devices.

The used dataset is confidential and this code project is hand-tailored to this dataset. 
Nevertheless, all concepts used in this project are applicable to most animal call datasets that provide labeled audio data. 
Thus, this code project can be a helpful template for future research in animal acoustic analysis and specifically for bat echolocation call data.
DOI: 10.6084/m9.figshare.5353462.v1
title: Results of Data analysis of RNA-Seq

description: <b>Data analysis of RNA-Seq</b> FASTQ files for RCC4-EV cells (DRR100656) and RCC4-VHL cells (DRR100657) were obtained from the Sequence Read Archive (https://trace.ddbj.nig.ac.jp/dra/index_e.html). The quality of sequence data was evaluated by FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) after the trimming process by fastx_toolkit v 0.0.14 (http://hannonlab.cshl.edu/fastx_toolkit/). The human reference sequence file (hs37d5.fa) was downloaded from the 1000 genome ftp site (ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/phase2_reference_assembly_sequence/), and the annotated general feature format (gff) file was downloaded from the Illumina iGenome ftp site (ftp://igenome:G3nom3s4u@ussd-ftp.illumina.com/Homo_sapiens/NCBI/build37.2/). The human genome index was constructed with bowtie-build in Bowtie v.2.2.9. The fastq files were aligned to the reference genomic sequence by TopHat v.2.1.1 with default parameters. Bowtie2 v2.2.9 and Samtools v.1.3.1 was used with the TopHat program47. Estimation of transcript abundance was calculated, and the count values were normalized to the upper quartile of the fragments per kilobase of transcript per million fragments mapped reads (FPKM) using Cufflinks (cuffdiff) v2.1.1. cuffdiff output (gene_exp. diff) was presentated (gene_exp.diff.txt).
DOI: 10.17632/4ctp368fg5
title: An electromyography-based multi-muscle fatigue model to investigate operational task performance

description: This dataset corresponds to the study presented in the paper "An Electromyography-Based Multi-Muscle Fatigue Model to Investigate Operational Task Performance." It comprises processed electromyography (EMG) data from eight muscles of the shoulder complex — Muscle 1: Medial Deltoid; Muscle 2: Anterior Deltoid; Muscle 3: Posterior Deltoid; Muscle 4: Supraspinatus; Muscle 5: Infraspinatus; Muscle 6: Teres Major; Muscle 7: Biceps; Muscle 8: Triceps—collected during various task conditions. The tasks were divided in static and dynamic trials. The static tasks required holding 2 and 6 lbs weights till exhaustion whereas dynamic tasks involved repetitive movement with 2 and 6 lbs, performed at two different shoulder heights: high and low
DOI: 10.6084/m9.figshare.10265072.v1
title: pSHDY*in_PpetE_BCD2_mVenus.dna

description: Autonomous shuttle plasmid used for Cu<sup>2+</sup>-induced overexpression of a codon optimized mVenus reporter fluorophore in the cyanobacterium <i>Synechocystis </i>sp. PCC 6803.<br>Basic plasmid backbone derived from pSHDY (w/o <i>mobA</i>Y25F point mutation):doi: https://doi.org/10.1101/757948
DOI: 10.6084/m9.figshare.19949708.v2
title: HPL - Multi-cancer 5x

description: Pre-trained weights on Barlow Twins Multi-cancer at 5X magnification with 60% background limit.
DOI: 10.6084/m9.figshare.2059257.v2
title: fmri network templates

description: canonical templates for functional brain networks. these are nifti versions of this data: http://www.brainnexus.com/resources/resting-state-fmri-templates<br>references:<br>1. Calhoun VD, Adali T, Pearlson GD, & Pekar JJ. (2001). A method for making group inferences from functional MRI data using independent component analysis. Hum Brain Mapp. 14:140-151.2. Chang C, & Glover GH. (2009). Effects of model-based physiological noise correction on default mode network anti-correlations and correlations. Neuroimage. 47:1448-1459.3. Thomason ME, Dennis EL, Joshi AA, Joshi SH, Dinov ID, et al. (on line, 12/5/2010). Resting-state fMRI can reliably map neural networks in children. Neuroimage.We are using these in [ANTsR](http://stnava.github.io/ANTsR/) for prior-based eigenanatomy.
DOI: 10.6084/m9.figshare.25484692.v1
title: Source Data for paper of "Ice sheet and precession controlled subarctic Pacific productivity and upwelling over the last 550,000 years"

description: Dataset related to the paper "Ice sheet and precession control on biological export production and upwelling in the subarctic Pacific over the last 550,000 years"
DOI: 10.17632/6jmbv4gjz8
title: C# projects for code idioms mining

description: This dataset contains files from a snapshot of open-source code repositories found on Github, which are used for quantitatively evaluating the inference step of the SAGED approach. 
The approach is described in the paper named "Automating the Development of API-Based Generators Using Code Idioms Mining'.
DOI: 10.17632/8thcjw5533
title: Replication Package for Wallskog (JFE 2025): Entrepreneurial Spillovers Across Coworkers

description: Replication files for "Entrepreneurial Spillovers Across Coworkers" by Melanie Wallskog, published in the Journal of Financial Economics.
Includes code to create pseudo (fake) data to test the data build and analysis code. Please note that the pseudo data does not reflect anything about the actual data used in the project (beyond variable names), and consequently the code does not produce the actual values in the tables and figures in the paper.
DOI: 10.17632/js3x8tw3r5
title: Ross derivatives

description: Data for options Interpolated volatility values
DOI: 10.17632/phxtv76n5s
title: AMBER force field parameters of 160 organic molecules for MD simulations using GROMACS

description: General AMBER force field (GAFF) parameters are provided for 160 organic molecules including drugs, natural products, and steroids, which can be employed without further processing in molecular dynamics (MD) simulations using GROMACS. The parameters were determined based on quantum mechanical (QM) calculations involving geometry optimization at the HF6-31G* level of theory using Gaussian 09. For each molecule a coordinate file of the three-dimensional molecular structure, the topology and the parameter file are provided. The applicability of these parameters was demonstrated by MD simulations for each of these molecules.using Gromacs 2018. All Gaussian 09 and Gromacs 2018 input files are provided too, along with example bash scripts for how to invoke these programs.
DOI: 10.6084/m9.figshare.20747617.v1
title: Datasets

description: Datasets used in the experimental evaluation of the paper. These datasets have been collected from a variety of sources and are grouped here for convenience in repeating the experiments of the paper. <br> All files have the same format: they are gzip compressed text files, with one floating point number per line.
DOI: 10.6084/m9.figshare.21755357.v1
title: serum metabolomics of cognitive impairment before and after FMT

description: data of serum metabolomics of cognitive impairment before and after FMT
DOI: 10.6084/m9.figshare.25416112.v2
title: List of analysed media - Project Interactivity in Mexican Online Media Outlets

description: This is a list of the sample analysed within the project Interactivity in Mexican Online Media Outlets.
DOI: 10.6084/m9.figshare.25605414.v2
title: Supplemental Data FIle 7_PKD_6m_vs_WT_6m_Downregulated Genes.xlsx

description: Supplemental Data FIle 7_PKD_6m_vs_WT_6m_Downregulated Genes.xlsx
DOI: 10.6084/m9.figshare.26860861.v1
title: additive-tsne-predicted

description: Dataset, model and code for additive prediction
DOI: 10.6084/m9.figshare.28659659.v1
title: isotope-data.xlsx

description: nitrous oxide isotope data collected from peer-reviewed articles
DOI: 10.6084/m9.figshare.28928384.v1
title: Source Data for "Relaxation Critical Dynamics in Measurement-induced Phase Transitions"

description: In this paper, we investigate the relaxation critical dynamics near the MIPT for different initial states in a one-dimensional quantum circuit. Specifically, when the initial state is in the volume-law phase with vanishing measurement probability, we find that the half-chain entanglement entropy $S$ decays as $S\propto t^{-1}$ with the coefficients proportional to the size of the system in the short-time stage; In contrast, when the initial state is the product state, $S$ increases with time as $S\propto \ln{t}$, consistent with previous studies. Despite these contrasting behaviors, we develop a unified scaling form to describe these scaling behaviors for different initial states where the off-critical-point effects can also be incorporated. This framework offers significant advantages for experimental MIPT detection. Our novel scheme, leveraging relaxation dynamical scaling, drastically reduces post-selection overhead, and can eliminate it completely with trackable classical simulation.
DOI: 10.17632/cjbthrjbsj
title: Data for: Oldest high-Ti basalt and magnesian crustal materials in feldspathic lunar meteorite Dhofar 1428

description: The three excel files contain major, trace elements of clasts and mineral in the Dhofar 1428 lunar meteorite, and age data of apatite of the HT basalt clast.
DOI: 10.17632/n8ctb4fcg5
title: THE EFFECT OF PERCEIVED USEFULNESS OF ONLINE REVIEWS ON HOTEL BOOKING INTENTIONS

description: The growth of the Internet has enabled consumer-to-consumer interactions through online platforms where users share content and influence the purchase decisions of other consumers. The objective of this research is to identify the effect of perceived usefulness of online reviews on hotel booking intentions. The approach is quantitative, using a questionnaire to collect data from consumers who use online reviews before booking a hotel. The data were analyzed using structural equation modeling. The results showed the direct influence of perceived information usefulness on purchase intention, and the antecedent constructs— needs of information, information credibility, and information quality—had a positive and significant impact on perceived usefulness of online reviews. Comparing these results with research by Erkan and Evans (2016) conducted with UK consumers that use social media to decide about their purchases, in this study information credibility was more relevant than information quality, suggesting a more skeptical behavior of Brazilian consumers. These findings have implications for practitioners that manage the digital marketing of organizations inserted in this environment, mainly regarding the impact of credibility and quality of online reviews on hotel booking intentions, being this a practical contribution of the research. Keywords: Hospitality services. Online consumer reviews. Perceived usefulness. Purchase Intention.
DOI: 10.6084/m9.figshare.25152299.v1
title: Hu and Zhang, China's National Fitness Plan, data

description: Hu and Zhang, China's National Fitness Plan, data
DOI: 10.6084/m9.figshare.26087821.v1
title: HiGTS_2006s4

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2006s4 contains the data from October 1, 2006 to December 31, 2006.
DOI: 10.6084/m9.figshare.7380389.v1
title: A History from Below: Translators in the Publicational Network of Four Magazines of China Book Company, 1913-1923

description: <sub>This dataset is a direct output of the project titled <b>"Mapping the Translators' Network of the Shanghai Publisher Chung-hua Library (1912-1920s)"</b> and funded by the Faculty of Arts, CUHK under Direct Grant for Research 2016-17.</sub><sub>The dataset is cited in the author’s paper titled <b>“A History from Below: Translators in the Publicational Network of Four Magazines of China Book Company, 1913-1923”</b>, completed in December 2018 and forthcoming in 2020 in<i> Translation Studies</i>. </sub><sub>The dataset is based on the following reproductions of four early twentieth-century Chinese magazines:</sub><sub>1.Wang Dungen 王鈍根 ed. 1913-1915. <b><i>Youxi zazhi</i> 遊戲雜誌 (The Pastime)</b>. 19 issues. Shanghai: Zhonghua tushuguan. Microform, Shanghai: Shanghai Library, 2017.</sub><sub>2. Wang Dungen 王鈍根, Sun Jiong 孫炯, Chen Diexian 陳蝶仙, Zhou Shoujuan 周瘦鵑, eds. 1914-1916; 1921-1923. <b><i>Libai Liu</i> 禮拜六 (The Saturday).</b> 200 issues. Shanghai: Zhonghua tushuguan. Bounded reprint, Yang Zhou: Jiangsu guangling guji keyin she, 1987.</sub><sub>3. Wang Junqing 王均卿 ed. 1914-1915. <b><i>Xiangyan zazhi </i>香艷雜誌 (Fragrance).</b> 12 issues. Shanghai: Zhonghua tushuguan. Bounded reprint, Beijing: Xianzhuang shuju, 2007.</sub><sub>4. Chen Diexian 陳蝶仙 ed. 1914-1915. <b><i>Nüzi shijie </i>女子世界 (Ladies’ World)</b>. 6 issues. Shanghai: Zhonghua tushuguan. Microform. Shanghai: Shanghai Library, 2017.</sub><sub>Chinese titles and proper names are untranslated at this stage.</sub><sub>The dataset consists of nine items:</sub><sub><b><i>Item A</i></b><i><b> contributed items.xlsx</b></i>, a full catalogue of the contributed items in the magazines, with translations marked;</sub><sub><b><i>Item B dataspreadsheet.xlsx</i></b>, a structured record of the bibliographical information of the contributors and their social connections as seen in the publications, with translators marked;</sub><sub><b><i>Item C</i></b> <i>records of translators.xlsx</i>, which contains the information extracted from (A) and (B) about the translators, the titles of their translated works, and each translator’s translation:publication ratio,</sub><sub><b><i>Item D China Book graph.gephi</i></b>, the editable and searchable graph of the publicational network in this study on the platform Gephi</sub><sub><b><i>Item E China Book graph.pd</i></b><i><b>f </b></i>and <b><i>Item F China Book graph in grey.pdf</i></b>, the visual outputs of item D cited in the last section of the aforementioned paper.</sub><sub><i><b>Item G issue dates.docx</b></i>, a list of the publication date/year of each magazine issue; and finally</sub><sub><b>Item H translators with affiliations.docx</b><i>, </i>a list of publication records of the translators with disclosed affiliations. </sub><sub><b>Item I explanatory notes.pdf</b>, a document on the rationale and structure of the data collection. </sub>
DOI: 10.6084/m9.figshare.8483951.v1
title: Supplementary Material for: Pre-Operative Interictal Discharge Patterns and Magnetic Resonance Imaging Findings Affect Prognosis of Temporal Lobe Epilepsy Surgery

description: <b><i>Objective:</i></b> This study investigated whether pre-operative interictal discharge patterns detected by electroencephalogram (EEG) and magnetic resonance imaging (MRI) findings affect the surgical prognosis in temporal lobe epilepsy (TLE) patients. <b><i>Methods:</i></b> A retrospective analysis of 115 cases of patients with refractory TLE was carried out from October 2010 to 2014 based on the classification of pre-operative interictal discharge patterns in EEG and MRI findings. The patients were followed up for 4 years after surgery. The ILAE method was used to assess differences in seizure-free rate among different types of interictal discharge pattern as well as in MRI findings. <b><i>Results:</i></b> A total of 115 cases were classified according to interictal discharge patterns in EEG, including normal cases, unilateral anterior discharge, unilateral multi-region discharge, and bilateral discharge. MRI findings were classified into negative results and positive results. Unilateral anterior and bilateral discharges showed statistically significant differences in post-operative seizure-free rates (<i>p</i>&lt; 0.001). MRI-positive cases showed good overall post-operative outcome, irrespective of interictal discharge pattern in the EEG, whereas MRI-negative cases showed good overall prognosis if the interictal discharge pattern in EEG occurred in the unilateral anterior region. <b><i>Conclusion:</i></b> If the pre-operative interictal discharge pattern in EEG is confined to the unilateral anterior region, prognosis is good. If there are abnormalities in MRI findings, post-operative prognosis is good, regardless of pre-operative interictal discharge patterns in EEG. Surgical intervention is highly recommended for TLE patients with normal MRI findings and interictal discharge confined to the unilateral anterior region.
DOI: 10.17632/d4xt63mgjm
title: Common Carotid Artery Ultrasound Images

description: The dataset consists of aquistified ultrasound images of the common carotid artery. The images were taken from a Mindary UMT-500Plus ultrasound machine with an L13-3s linear probe. The study group consisted of 11 subjects, with each person examined at least once on the left and right sides. 2 subjects were examined using the vascular modality and 8 using the carotid modality. Time series (DICOM) were converted to png files and cropped appropriately. Each person had 100 images, making a total of 1100 images. The dataset also includes corresponding expert masks (corresponding file name) made by a technician and verified by an expert. The collection can be used for carotid artery segmentation and geometry measurement and evaluation. 

Image resolution: 709 x 749 x 3 
Number of images: 2200 
File format: PNG
DOI: 10.17632/dtvvt9pc9c
title: North Atlantic subsurface temperature response controlled by effective freshwater input in "Heinrich" events

description: Data used for plotting figures in the main context. -- First commit: Nov 26th, 2019 for review. -- Second commit: Apt 1st, 2020 for publication
DOI: 10.17632/p77tsyrbx2
title: Abaqus Code for a Residual Control Staggered Solution Scheme for the Phase-Field Modeling of Brittle and Ductile Fracture

description: Abaqus UEL and UMAT subroutines for the phase-field modelling of brittle and ductile fracture. The code consists of the 3-layered system including the user elements and user material subroutine producing a staggered algorithm with a residual norm-based stopping criterion. The finite element formulations include 4-node full integration 2D and 8-node full integration 3D linear elements. The source code and input files for the examples published in the associated journal paper as well as the PhD thesis are provided here. The files contain detailed explanations and instructions for users. This is an updated version of the dataset! Ductile material behavior has been included with 2 different phase-field formulations, more examples with better explanations, python scripts etc. For simplicity, the brittle examples are included with elastic material model only. In future versions, complete generalization of the model will be provided. See more info in Version_4-ChangeLog.txt! For additional information, suggestions, comments or collaboration, please contact me at karlo.seles@fsb.hr! To be added in the next versions: - Tetrahedral finite element formulation - Python script for the input file generation - Fatigue material behavior model with cyclically loaded examples - Completely generalized model presented in the author's PhD thesis: -- Brittle, ductile and fatigue behavior in one model -- Microstructural geometry example with contact problems - Finite strain theory - Complete thread-parallel computation for increased efficiency
DOI: 10.17632/svb8nc9b7y
title: A comparative assessment of accommodation strategies based on elevated buildings for coastal adaptation

description: Structural Accommodation Database for metropolitan France, the UK, Ireland
DOI: 10.17632/vfkcwj6wty
title: Effects of Fiscal Rules on Budget Deficit:Does Democracy Matter? database
DOI: 10.6084/m9.figshare.1611141.v1
title: Machine learning for exciton dynamics: Qy trajectories

description: In this folder we report the data of our paper, recently posted on the arXiv. In particular we provide the energy gap trajectories for each BChl of monomer A of the Fenna-Matthews-Olson (FMO) complex. These were computed using QM/MM and TDDFT, and then they were predicted using multi layer perceptrons with different methods to select the training data ( Random, Correlation, Frobenius and Taxicab).
DOI: 10.6084/m9.figshare.18096062.v1
title: Supplementary Material for: Body Mass Index, Sarcopenia, and Their Variations in Predicting Outcomes for Patients Treated with Nivolumab for Metastatic Renal Cell Carcinoma

description: <b><i>Introduction:</i></b> The advent of immune checkpoint inhibitors (ICIs) such as nivolumab has enabled outcomes for metastatic renal cell carcinoma (mRCC) to be improved. However, only around 25% of patients respond to these therapies without being able to formally identify them. Data on relevant predictive markers are still lacking. The obesity paradox has been shown as a relevant prognostic marker in mRCC with better outcomes for obese patients. Nevertheless, the impact of weight variation and the presence of sarcopenia during ICI treatment is not known for now. <b><i>Methods:</i></b> In a retrospective study, weight and its variations were collected at first day of ICI and at 6 weeks of treatment. Scanographic imagery was used to define the skeletal muscle index (SMI) as a reflect of sarcopenia. The impact of these parameters as predictive and prognostic factors for mRCC with nivolumab was evaluated. <b><i>Results:</i></b> A higher body mass index (BMI) at baseline was significantly associated with response at the first scan (<i>p</i> = 0.036). Longer overall survival (OS) was observed for patients with a weight gain compared to the group with weight loss (<i>p</i> = 0.00028). Median OS for sarcopenic patients was 17.2 months and 31.6 months for the non-sarcopenic group of patients, but there was no statistical difference. <b><i>Conclusion:</i></b> This trial showed that a higher BMI and weight gain during nivolumab treatment were good predictive markers for outcomes in mRCC with nivolumab. Sarcopenia and variations in SMI could thus be of interest, but further studies are required.