cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25442/hku.16608856.v1
title: Supporting data for "Epigenetic-associated phenotypic plasticity in the edible oyster under ocean acidification"

description: Contain clean data from methylRAD sequencing for quality control, methyl level distribution, genome mapping, methylation expression, sites level annotation, pearson correlation, gene depth statistics, differentially methylated sites and genes, the function of differentially methylated genes, supplementary materials which include bioinformatic flow chart, enrichment formula and score, illumine quality, as well as the technicality process for methylRAD enzymes including FspEI and LpnPI.
DOI: 10.6084/m9.figshare.16660762.v2
title: ICP raw data.zip

description: Studies on novel diagnostic and predictive biomarkers of Intrahepatic Cholestasis of Pregnancy through metabolomics and proteomics raw data
DOI: 10.25442/hku.16621657
title: Supporting data for glucose deprivation-induced aberrant FUT1-mediated fucosylation drives cancer stemness in hepatocellular carcinoma

description: Supporting data for glucose deprivation-induced aberrant FUT1-mediated fucosylation drives cancer stemness in hepatocellular carcinoma. Includes histology images, RNA-sequencing results, fucosylated peptide profiling data, RPG presentation slides and poster.
DOI: 10.25442/hku.16621657.v1
title: Supporting data for glucose deprivation-induced aberrant FUT1-mediated fucosylation drives cancer stemness in hepatocellular carcinoma

description: Supporting data for glucose deprivation-induced aberrant FUT1-mediated fucosylation drives cancer stemness in hepatocellular carcinoma. Includes histology images, RNA-sequencing results, fucosylated peptide profiling data, RPG presentation slides and poster.
DOI: 10.25442/hku.16546446
title: Supporting dataset for "Enhancing remyelination therapy with use of the bone marrow neurosphere-derived pericytes"

description: The dataset contained all the data for the thesis "Enhancing remyelination therapy with use of the bone marrow neurosphere-derived pericytes" This study showed a protocol to derive brain-pericyte like cells with the potential to treat demyelination from a readily accessible source, bone marrow. With the protocol modified from our lab, rat bone marrow stromal cells were used to induce bone marrow neurospheres in ultra-low adhesion conditions with a neurosphere induction medium. Afterwards, rat bone marrow neurospheres were later seeded on an adherent culture plate coated with gelatin and cultured under a pericyte induction medium to give rise to pericytes. <br>The supporting data provided the data to show the identity of the bone marrow neurosphere-derived pericytes, suggesting their subtypes and their functions. It contained the characterization of rat and human bone marrow stromal cells, neurospheres, and then the bone marrow neurosphere-derived pericytes to show their identities and high purity in each derivation stage. Furthermore, the dataset provided the statistics of the tube formation assay for rat bone marrow neurosphere-derived pericytes and also the immunocytochemistry data to show the assembly of pericytes in an endothelial network. <br>Furthermore, the dataset includes the behavioural data to show the effect of rat bone marrow neurosphere-derived pericytes on <i>in vivo </i>remyelination using shiverer model with co-transplantation with rat bone marrow neurosphere-derived oligodendrocyte precursor cells and rat bone marrow neurosphere-derived pericytes. The rotarod performance test measured the functional recovery of motor performance, and co-transplantation of rat bone marrow neurosphere-derived pericytes and rat bone marrow neurosphere-derived oligodendrocyte precursor cells was shown to improve the motor performance of the shiverer mice after 12 weeks of co-transplantation. It also includes the data from immunohistochemistry to show the presence of the transplanted cells after one week of transplantation, showing the survival of the transplanted cells.
DOI: 10.25442/hku.16546446.v1
title: Supporting dataset for "Enhancing remyelination therapy with use of the bone marrow neurosphere-derived pericytes"

description: The dataset contained all the data for the thesis "Enhancing remyelination therapy with use of the bone marrow neurosphere-derived pericytes" This study showed a protocol to derive brain-pericyte like cells with the potential to treat demyelination from a readily accessible source, bone marrow. With the protocol modified from our lab, rat bone marrow stromal cells were used to induce bone marrow neurospheres in ultra-low adhesion conditions with a neurosphere induction medium. Afterwards, rat bone marrow neurospheres were later seeded on an adherent culture plate coated with gelatin and cultured under a pericyte induction medium to give rise to pericytes. <br>The supporting data provided the data to show the identity of the bone marrow neurosphere-derived pericytes, suggesting their subtypes and their functions. It contained the characterization of rat and human bone marrow stromal cells, neurospheres, and then the bone marrow neurosphere-derived pericytes to show their identities and high purity in each derivation stage. Furthermore, the dataset provided the statistics of the tube formation assay for rat bone marrow neurosphere-derived pericytes and also the immunocytochemistry data to show the assembly of pericytes in an endothelial network. <br>Furthermore, the dataset includes the behavioural data to show the effect of rat bone marrow neurosphere-derived pericytes on <i>in vivo </i>remyelination using shiverer model with co-transplantation with rat bone marrow neurosphere-derived oligodendrocyte precursor cells and rat bone marrow neurosphere-derived pericytes. The rotarod performance test measured the functional recovery of motor performance, and co-transplantation of rat bone marrow neurosphere-derived pericytes and rat bone marrow neurosphere-derived oligodendrocyte precursor cells was shown to improve the motor performance of the shiverer mice after 12 weeks of co-transplantation. It also includes the data from immunohistochemistry to show the presence of the transplanted cells after one week of transplantation, showing the survival of the transplanted cells.
DOI: 10.6084/m9.figshare.14217326
title: Data for “Biogeography of Bacterial Communities and Specialized Metabolism in Human Aerodigestive Tract Microbiomes”

description: This repository contains the derivedData for adt_bgcs, including output from antiSMASH, Kallisto, MetaPhlAn, and networks for CytoScape.
DOI: 10.6084/m9.figshare.16635058
title: Fiber Optic Theranostics (FOT): The interstitial fiber-optic needles for cancer sensing and therapy

description: <b>We investigate tumor detection by using the hypoxia-sensitive fluorescent fiber to realize the fast and accurate tumor recognition and diagnosis. We further perform the tumor treatment by exploiting the endogenous photothermal effect of the rare-earth-doped optical fibers, which are minimally intervened into the solid tumor. The suppression and eradication of tumor xenografts significantly validate the availability of the presented tumoricidal fiber. Our strategy opens horizons to inspire the design of optical fiber-mediated “plug and play” precise tumor theranostics, which may intrigue broader fields, such as fiber optics, materials, chemistry, medicine, and clinics.</b>
DOI: 10.6084/m9.figshare.16635058.v1
title: Fiber Optic Theranostics (FOT): The interstitial fiber-optic needles for cancer sensing and therapy

description: <b>We investigate tumor detection by using the hypoxia-sensitive fluorescent fiber to realize the fast and accurate tumor recognition and diagnosis. We further perform the tumor treatment by exploiting the endogenous photothermal effect of the rare-earth-doped optical fibers, which are minimally intervened into the solid tumor. The suppression and eradication of tumor xenografts significantly validate the availability of the presented tumoricidal fiber. Our strategy opens horizons to inspire the design of optical fiber-mediated “plug and play” precise tumor theranostics, which may intrigue broader fields, such as fiber optics, materials, chemistry, medicine, and clinics.</b>
DOI: 10.5281/zenodo.5525478
title: Wikidata Dump drinks_all

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 39, <b>statement count</b>: 229, <b>triple count</b>: 2754
DOI: 10.5281/zenodo.5525477
title: Wikidata Dump drinks_all

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 39, <b>statement count</b>: 229, <b>triple count</b>: 2754
DOI: 10.5281/zenodo.5525480
title: Wikidata Dump drinks_all

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 39, <b>statement count</b>: 229, <b>triple count</b>: 2754
DOI: 10.5281/zenodo.5525479
title: Wikidata Dump drinks_all

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 39, <b>statement count</b>: 229, <b>triple count</b>: 2754
DOI: 10.6084/m9.figshare.16676370
title: Supplementary Mathematica code - Primary deformation, linear and weakly non-linear bifurcation analysis. from Post-bifurcation behaviour of elasto-capillary necking and bulging in soft tubes

description: This supplementary Mathematica programme provides a framework of code from which the main results of the paper can be reproduced or investigated further. The programme contains computations of the analytical localised bifurcation conditions, as well as basic implementations of the associated linear and weakly non-linear bifurcation analyses.
DOI: 10.5281/zenodo.5525829
title: Multiple Image Splicing Dataset (MISD): A Dataset for Multiple Splicing

description: Multiple Image Splicing dataset is the first publicly available Multiple Image Splicing Dataset. It consists of 918 images classified as Authentic or Spliced.618 Authenticate images of type JPG and 300 Multiple Spliced JPG images of size 384 ×<em> </em>256.
DOI: 10.5281/zenodo.5525828
title: Multiple Image Splicing Dataset (MISD): A Dataset for Multiple Splicing

description: Multiple Image Splicing dataset is the first publicly available Multiple Image Splicing Dataset. It consists of 918 images classified as Authentic or Spliced.618 Authenticate images of type JPG and 300 Multiple Spliced JPG images of size 384 ×<em> </em>256.
DOI: 10.6084/m9.figshare.15832008.v1
title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in <i>PKP3</i> in lung epithelial cells

description: Cystic fibrosis (CF) is a monogenic disease, characterized by massive chronic lung inflammation. The observed variability in clinical phenotypes in monozygotic CF twins is likely associated with the extent of inflammation. This study sought to investigate inflammation-related aberrant DNA methylation in CF twins and to determine to what extent acquired methylation changes may be associated with lung cancer. Blood-based genome-wide DNA methylation analysis was performed to compare the DNA methylomes of monozygotic twins, from the European CF Twin and Sibling Study with various degrees of disease severity. Putatively inflammation-related and differentially methylated positions were selected from a large lung cancer case-control study and investigated in blood by targeted bisulphite next-generation-sequencing. An inflammation-related locus located in the <i>Plakophilin-3</i> (<i>PKP3</i>) gene was functionally analysed regarding promoter and enhancer activity in presence and absence of methylation using luciferase reporter assays. We confirmed in a unique cohort that monozygotic twins, even if clinically discordant, have only minor differences in global DNA methylation patterns and blood cell composition. Further, we determined the most differentially methylated positions, a high proportion of which are blood cell-type-specific, whereas others may be acquired and thus have potential relevance in the context of inflammation as lung cancer risk factors. We identified a sequence in the gene body of <i>PKP3</i> which is hypermethylated in blood from CF twins with severe phenotype and highly variably methylated in lung cancer patients and controls, independent of known clinical parameters, and showed that this region exhibits methylation-dependent promoter activity in lung epithelial cells.
DOI: 10.5281/zenodo.5525459
title: Investigating ADEPT's Utility: An Exploration of the Literature

description: This is the dataset and initial analysis of our literature mapping study on continuous software engineering using the ADEPT theory as a lens.
DOI: 10.5281/zenodo.5525458
title: Investigating ADEPT's Utility: An Exploration of the Literature

description: This is the dataset and initial analysis of our literature mapping study on continuous software engineering using the ADEPT theory as a lens.
DOI: 10.6084/m9.figshare.13058840
title: Data and code for "Modified Parker's method for gravitational forward and inverse modeling using general polyhedral models"

description: We propose a new modified Parker's method for efficient gravitational forward modeling and inversion using general polyhedral models. We have made several important modifications to the classical method, including: 1) The new method is now applicable to a general polyhedron represented by triangulated surface or tetrahedral mesh, and with arbitrarily variable 3D density distribution. 2) An optimal Fourier-domain sampling strategy is used to improve the numerical accuracy of the new algorithm significantly. 3) A simple and effective automatic layering technique is introduced to accelerate the convergence rate of Parker's method. The method is demonstrated using both synthetic and real polyhedral models, including a sphere model approximated by a polyhedron, two asteroids, a digital elevation model in the Himalaya region, and the Yucca Flat basin model in Nevada. The numerical results show that, compared with analytical solutions of polyhedral models in the space domain, the modified Parker's method can improve the computational efficiency by several orders of magnitude while obtaining almost the same simulation results. The difference is well below existing instrumentation error level. By embedding the new forward algorithm into an iterative process, it can be used for fast inversion of density interfaces. Our new method is suitable for the efficient modeling and inversion of gravitational potential, gravitational vector, and gravitational gradient tensor caused by polyhedral models with a large number of faces, representing geological abnormal bodies, asteroids, and single or multilayer density interface models with triangulated surfaces.
DOI: 10.6084/m9.figshare.16673944
title: Coded Data of CPIC, CSI, MS, and Their Sub-scales Which is Supporting Our Results

description: The file attached is a coded file for the Children’s Perception of Inter-parental Conflict (CPIC) scale, Couple's Satisfaction Index scale, and the Marital Scale and their sub-scales. Descriptions relevant to the files are listed below. Please relate the descriptions to files.<br><br><b>1) CPIC (Children's Perception of Inter-parental Conflict) </b>One of the files attached is a coded file for the Children’s Perception of Inter-parental Conflict (CPIC) Scale. The coded file was used to run on SPSS for analysis. <b>Code -</b><b>TRUE - 0</b><b>SORT OF TRUE - 1</b><b>FALSE - 2</b>The numbers which are written after CPIC are question numbers of the scale. (Files named CPIC sub-scales include coding for sub-scales of CPIC. Numbers that are written after CPIC are question numbers that belong to that specific sub-scale. Coding is the same as that of the whole CPIC coded data). <br><br><b>2) CSI (Couple's Satisfaction Index) </b>The file attached below is a coded file for the Couple’s Satisfaction Index (CSI) Scale. The coded file was used to run on SPSS for analysis. <b>Code for questions 1 till 10 -</b><b>EXTREMELY UNHAPPY - 0</b><b>FAIRLY UNHAPPY - 1</b><b>A LITTLE UNHAPPY - 2</b><b>HAPPY - 3</b><b>VERY HAPPY - 4</b><b>EXTREMELY HAPPY - 5</b><b>PERFECT - 6</b><br><b>Code for questions 11 till 16 -</b><b>BORING 0, 1, 2, 3, 4, 5 INTERESTING </b><b>BAD 0, 1, 2, 3, 4, 5 GOOD </b><b>EMPTY 0, 1, 2, 3, 4, 5 FULL </b><b>FRAGILE 0, 1, 2, 3, 4, 5 STURDY </b><b>DISCOURAGING 0, 1, 2, 3, 4, 5 HOPEFUL </b><b>MISERABLE 0, 1, 2, 3, 4, 5 ENJOYABLE </b>The numbers which are written after CPIC are question numbers of the scale. <br><br><b>3) MS (Marital Scale)</b>The file attached below is a coded file for the Marital Scale (MS). The coded file was used to run on SPSS for analysis. <b>Code -</b><b>STRONGLY DISAGREE - 0</b><b>MODERATELY DISAGREE - 1</b><b>SLIGHTLY DISAGREE - 2</b><b>NEITHER DISAGREE NOR AGREE - 3</b><b>SLIGHTLY AGREE - 4</b><b>MODERATELY AGREE - 5</b><b>STRONGLY AGREE - 6 </b>The numbers which are written after MS are question numbers of the scale. (Files named MS sub-scales include coding for sub-scales [intent to marry {ITM}, general attitude towards marriage {GATM} and aspects of marriage {AOM}] of MS. Numbers that are written after MS are question numbers that belong to that specific sub-scale. Coding is the same as that of the whole MS coded data). <br>
DOI: 10.6084/m9.figshare.16673944.v1
title: Coded Data of CPIC, CSI, MS, and Their Sub-scales Which is Supporting Our Results

description: The file attached is a coded file for the Children’s Perception of Inter-parental Conflict (CPIC) scale, Couple's Satisfaction Index scale, and the Marital Scale and their sub-scales. Descriptions relevant to the files are listed below. Please relate the descriptions to files.<br><br><b>1) CPIC (Children's Perception of Inter-parental Conflict) </b>One of the files attached is a coded file for the Children’s Perception of Inter-parental Conflict (CPIC) Scale. The coded file was used to run on SPSS for analysis. <b>Code -</b><b>TRUE - 0</b><b>SORT OF TRUE - 1</b><b>FALSE - 2</b>The numbers which are written after CPIC are question numbers of the scale. (Files named CPIC sub-scales include coding for sub-scales of CPIC. Numbers that are written after CPIC are question numbers that belong to that specific sub-scale. Coding is the same as that of the whole CPIC coded data). <br><br><b>2) CSI (Couple's Satisfaction Index) </b>The file attached below is a coded file for the Couple’s Satisfaction Index (CSI) Scale. The coded file was used to run on SPSS for analysis. <b>Code for questions 1 till 10 -</b><b>EXTREMELY UNHAPPY - 0</b><b>FAIRLY UNHAPPY - 1</b><b>A LITTLE UNHAPPY - 2</b><b>HAPPY - 3</b><b>VERY HAPPY - 4</b><b>EXTREMELY HAPPY - 5</b><b>PERFECT - 6</b><br><b>Code for questions 11 till 16 -</b><b>BORING 0, 1, 2, 3, 4, 5 INTERESTING </b><b>BAD 0, 1, 2, 3, 4, 5 GOOD </b><b>EMPTY 0, 1, 2, 3, 4, 5 FULL </b><b>FRAGILE 0, 1, 2, 3, 4, 5 STURDY </b><b>DISCOURAGING 0, 1, 2, 3, 4, 5 HOPEFUL </b><b>MISERABLE 0, 1, 2, 3, 4, 5 ENJOYABLE </b>The numbers which are written after CPIC are question numbers of the scale. <br><br><b>3) MS (Marital Scale)</b>The file attached below is a coded file for the Marital Scale (MS). The coded file was used to run on SPSS for analysis. <b>Code -</b><b>STRONGLY DISAGREE - 0</b><b>MODERATELY DISAGREE - 1</b><b>SLIGHTLY DISAGREE - 2</b><b>NEITHER DISAGREE NOR AGREE - 3</b><b>SLIGHTLY AGREE - 4</b><b>MODERATELY AGREE - 5</b><b>STRONGLY AGREE - 6 </b>The numbers which are written after MS are question numbers of the scale. (Files named MS sub-scales include coding for sub-scales [intent to marry {ITM}, general attitude towards marriage {GATM} and aspects of marriage {AOM}] of MS. Numbers that are written after MS are question numbers that belong to that specific sub-scale. Coding is the same as that of the whole MS coded data). <br>
DOI: 10.6084/m9.figshare.16673950
title: Sum of Coding of Scales and Coding of Age and Gender

description: The file attached below includes a sum of the codes of all three scales and the coding for age and sex in demographics.<br><br><b>Code of Age-</b><b>19 - 25 = 1</b><b>26 - 32 = 2</b><b>33 - 40 = 3</b><b><br></b><b>Code of Sex/Gender-</b><b>MALE = 1</b><b>FEMALE = 2</b><br>
DOI: 10.6084/m9.figshare.16673950.v1
title: Sum of Coding of Scales and Coding of Age and Gender

description: The file attached below includes a sum of the codes of all three scales and the coding for age and sex in demographics.<br><br><b>Code of Age-</b><b>19 - 25 = 1</b><b>26 - 32 = 2</b><b>33 - 40 = 3</b><b><br></b><b>Code of Sex/Gender-</b><b>MALE = 1</b><b>FEMALE = 2</b><br>
DOI: 10.14459/2021mp1621980
title: Dataset of the paper Erdogan et al. (2021) : Real-time monitoring of ionosphere VTEC using Multi-GNSS carrier-phase observations and B-splines

description: The dataset comprises global Vertical Total Electron Content (VTEC) products stored in daily files (in IONEX format) and covers the days October 17 to 21, 2019. The temporal sampling of the VTEC data is 30 seconds. The spatial resolution is 5 degrees in longitude and 2.5 degrees in latitude. The dataset was generated from target parameters of the ionosphere estimated from real-time GNSS observations.
DOI: 10.6084/m9.figshare.16676437.v1
title: dss_dynamo.zip from Direct statistical simulation of low-order dynamo systems

description: In this paper, we investigate the effectiveness of direct statistical simulation (DSS) for two low-order models of dynamo action. The first model, which is a simple model of solar and stellar dynamo action, is third order and has cubic nonlinearities while the second has only quadratic nonlinearities and describes the interaction of convection and an aperiodically reversing magnetic field. We show how DSS can be used to solve for the statistics of these systems of equations both in the presence and the absence of stochastic terms, by truncating the cumulant hierarchy at either second or third order. We compare two different techniques for solving for the statistics, timestepping—which is able to locate only stable solutions of the equations for the statistics and direct detection of the fixed points. We develop a complete methodology and symbolic package in Python for deriving the statistical equations governing the low-order dynamic systems in cumulant expansions. We demonstrate that although direct detection of the fixed points is efficient and accurate for DSS truncated at second order, the addition of higher order terms leads to the inclusion of many unstable fixed points that may be found by direct detection of the fixed point by iterative methods. In those cases, timestepping is a more robust protocol for finding meaningful solutions to DSS.
DOI: 10.5517/ccdc.csd.cc257hsq
title: CCDC 2003213: Experimental Crystal Structure Determination

description: Related Article: Jugal Kishore Rai Deka, Biswajit Sahariah, Sushil S. Sakpal, Arun Kumar Bar, Sayan Bagchi, Bani Kanta Sarma|2021|Org.Lett.|23|7003|doi:10.1021/acs.orglett.1c00834
DOI: 10.5517/ccdc.csd.cc23f5qg
title: CCDC 1949085: Experimental Crystal Structure Determination

description: Related Article: Jugal Kishore Rai Deka, Biswajit Sahariah, Sushil S. Sakpal, Arun Kumar Bar, Sayan Bagchi, Bani Kanta Sarma|2021|Org.Lett.|23|7003|doi:10.1021/acs.orglett.1c00834
DOI: 10.5517/ccdc.csd.cc257hvs
title: CCDC 2003215: Experimental Crystal Structure Determination

description: Related Article: Jugal Kishore Rai Deka, Biswajit Sahariah, Sushil S. Sakpal, Arun Kumar Bar, Sayan Bagchi, Bani Kanta Sarma|2021|Org.Lett.|23|7003|doi:10.1021/acs.orglett.1c00834
DOI: 10.5517/ccdc.csd.cc257hwt
title: CCDC 2003216: Experimental Crystal Structure Determination

description: Related Article: Jugal Kishore Rai Deka, Biswajit Sahariah, Sushil S. Sakpal, Arun Kumar Bar, Sayan Bagchi, Bani Kanta Sarma|2021|Org.Lett.|23|7003|doi:10.1021/acs.orglett.1c00834
DOI: 10.5517/ccdc.csd.cc26t9v6
title: CCDC 2050118: Experimental Crystal Structure Determination

description: Related Article: Jugal Kishore Rai Deka, Biswajit Sahariah, Sushil S. Sakpal, Arun Kumar Bar, Sayan Bagchi, Bani Kanta Sarma|2021|Org.Lett.|23|7003|doi:10.1021/acs.orglett.1c00834