cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hcg4nm
title: Occurrence Download

description: A dataset containing 332 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Cypseloides rothschildi",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 332 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069390-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dm9nqc
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ixodida",
 "Country is North Macedonia"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027169-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zs8edm
title: Occurrence Download

description: A dataset containing 2293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-89.33865 43.05221,-89.33884 43.05241,-89.33926 43.05259,-89.3401 43.05236,-89.34055 43.05215,-89.33991 43.05089,-89.33771 43.05132,-89.33788 43.0517,-89.33865 43.05221))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2293 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053499-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tz4hxk
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ixodida",
 "Country is Mongolia"
 ]
}

 The dataset includes 74 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027178-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgg5rc
title: Occurrence Download

description: A dataset containing 7334 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Odonata, Ephemeroptera)",
 "Country is one of (Nigeria)"
 ]
}

 The dataset includes 7334 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091416-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrej58
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza thomsonii Hook.f."
 ]
}

 The dataset includes 27 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053491-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsw4u9
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Culicidae",
 "Country is Libya"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027794-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ve8uea
title: Occurrence Download

description: A dataset containing 3777 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Cypseloides senex",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 3777 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069389-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvuu7a
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza tingens C.B.Clarke ex C.E.C.Fisch."
 ]
}

 The dataset includes 14 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053492-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hue9ct
title: Occurrence Download

description: A dataset containing 402 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The vegetation data from the Mt. Bangtae, forest genetic resource reserve"
 ]
}

 The dataset includes 402 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050942-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2w9y74
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ixodida",
 "Country is Mauritania"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027185-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6s2js
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza oblongifolia DC."
 ]
}

 The dataset includes 67 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053500-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nthda
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza tirunelvelica A.N.Henry & Subr."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053493-230530130749713/datasets/export for details.
DOI: 10.15468/dl.abybfa
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oenothera brevipetala W.Dietr."
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050921-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6tnks
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ixodida",
 "Country is New Caledonia"
 ]
}

 The dataset includes 24 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027203-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzchp4
title: Occurrence Download

description: A dataset containing 3456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sakesphoroides cristatus (M.Wied-Neuwied, 1831)",
 "Year 2013-2022"
 ]
}

 The dataset includes 3456 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070265-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whe4zx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ixodida",
 "Country is Montserrat"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027190-230530130749713/datasets/export for details.
DOI: 10.15468/dl.wakahm
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cybister rugosus (W.S.MacLeay, 1825))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070264-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.catmt9
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Micrablepharus maximiliani (Reinhardt & Lütken, 1862)"
 ]
}

 The dataset includes 242 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053501-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxmv5z
title: Occurrence Download

description: A dataset containing 629 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oenothera epilobiifolia Kunth"
 ]
}

 The dataset includes 629 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050951-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngaxsv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ixodida",
 "Country is Mauritius"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027193-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rw77hw
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza tomentosa Jack ex Roxb."
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053495-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnzzag
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oenothera grisea W.Dietr."
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050967-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kcp37k
title: Occurrence Download

description: A dataset listing the 239047 species recorded in GBIF matching the query:
{
 "and" : [
 "Year is 2022",
 "BasisOfRecord is Human Observation",
 "TaxonomicStatus is Accepted"
 ]
}

 The dataset's 239047 records were derived from 1147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050949-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15055521
title: Supporting Data for the paper : A Sparse Bayesian Committee Machine Potential for Oxygen-containing Organic Compounds

description: This dataset accompanies the paper “A Sparse Bayesian Committee Machine Potential for Oxygen-containing Organic Compounds” by Soohaeng Yoo Willow, Seungwon Kim, D. ChangMo Yang, Miran Ha, Amir Hajibabaei, Jung Woon Yang, Kwang S. Kim, and Chang Woo Myung.

 

Data folder are not uploaded in github, because of their Data Management Policy.

 

ABSTRACT

Accurate and scalable interatomic potentials are essential for understanding material properties at the atomic level; however, steep computational demands often limit their application. Although recent advances in machine learning potentials have been significant, extending kernel-based models to accommodate a broad range of chemical compositions remains a major challenge. Here, we present the active robust Bayesian Committee Machine (RBCM) potential, specifically designed to handle extensive datasets encompassing hydrocarbons (in gas, cluster, liquid, and solid phases) and eight families of oxygen-containing organic compounds. By employing a committee-based approach, the RBCM circumvents the poor scaling inherent to kernel regressors, facilitating straightforward and cost-effective model expansion. Systematic benchmarking demonstrates its robustness in accurately describing complex processes such as the Diels-–Alder reaction, structural strain effects, and π–π interactions. These results highlight the RBCM’s potential as a powerful tool for developing universal, ab initio-level machine learning potentials that offer both transferability and scalability across diverse chemical systems.
DOI: 10.5281/zenodo.15055522
title: Supporting Data for the paper : A Sparse Bayesian Committee Machine Potential for Oxygen-containing Organic Compounds

description: This dataset accompanies the paper “A Sparse Bayesian Committee Machine Potential for Oxygen-containing Organic Compounds” by Soohaeng Yoo Willow, Seungwon Kim, D. ChangMo Yang, Miran Ha, Amir Hajibabaei, Jung Woon Yang, Kwang S. Kim, and Chang Woo Myung.

 

Data folder are not uploaded in github, because of their Data Management Policy.

 

ABSTRACT

Accurate and scalable interatomic potentials are essential for understanding material properties at the atomic level; however, steep computational demands often limit their application. Although recent advances in machine learning potentials have been significant, extending kernel-based models to accommodate a broad range of chemical compositions remains a major challenge. Here, we present the active robust Bayesian Committee Machine (RBCM) potential, specifically designed to handle extensive datasets encompassing hydrocarbons (in gas, cluster, liquid, and solid phases) and eight families of oxygen-containing organic compounds. By employing a committee-based approach, the RBCM circumvents the poor scaling inherent to kernel regressors, facilitating straightforward and cost-effective model expansion. Systematic benchmarking demonstrates its robustness in accurately describing complex processes such as the Diels-–Alder reaction, structural strain effects, and π–π interactions. These results highlight the RBCM’s potential as a powerful tool for developing universal, ab initio-level machine learning potentials that offer both transferability and scalability across diverse chemical systems.
DOI: 10.15468/dl.axx9ba
title: Occurrence Download

description: A dataset containing 2449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Robinia hispida L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2449 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001562-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wccnc4
title: Occurrence Download

description: A dataset containing 875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations, Atlas de las Aves de México: Fase II, Situación actual del búho manchado mexicano (Strix occidentalis lucida) y de los Strigiformes de la Reserva de la Biósfera La Michilía, WFVZ Bird Collections, Xeno-canto - Bird sounds from around the world, Avifauna de la Reserva de la Mariposa Monarca, Actualización y enriquecimiento de las bases de datos del proyecto de evaluación y análisis geográfico de la diversidad faunística de Chiapas, MVZ Bird Collection (Arctos), Delaware Museum of Nature & Science — Birds)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Megascops seductus (R.T.Moore, 1941)"
 ]
}

 The dataset includes 875 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001563-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u297sg
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "TaxonKey is Cydia pomonella (Linnaeus, 1758)"
 ]
}

 The dataset includes 52 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001565-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvtsbx
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bassariscus astutus (Lichtenstein, 1830)",
 "Year 1921-1939"
 ]
}

 The dataset includes 77 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001566-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15043490
title: Datasets for determination of the resolution function of the Wombat High Intensity Neutron Diffraction instrument: focussing Ge115 monochromator

description: Wombat is a high-intensity neutron diffraction instrument located at the OPAL reactor, Sydney, Australia. This dataset is one of a series collected to completely characterise the resolution of the instrument in different configurations.

For this dataset, data were collected from LaB6 and  Na2Ca3Al2F14 (NAC) samples at varying takeoff angles and wavelengths, with a traditional focussing monochromator built out of stacked Ge115 crystals at the monochromator position. This is the most commonly-used monochromator on Wombat.

The files ending in .nx.hdf are raw data files conforming to the NeXus standard (see nexusformat.org). The files ending in .xyd are three-column ASCII reduced data derived from the corresponding raw data NeXus file, with the columns being angle, intensity and standard uncertainty of that intensity. The compound (LaB6/NAC) and monochromator hkl used are included in the reduced data file name. '_mtth=nnn_' refers to a takeoff angle of 'nnn' degrees, and "no_PG/PG" refers to the absence/presence of a pyrolytic graphite filter to remove harmonic contamination. The files ending in .cif contain the same reduced data as the .xyd files, together with additional metadata regarding data reduction and collection.



In order to obtain the reduced data from the raw data, Monitor 1 counts were used to scale the data to 1000 monitor counts. Following this each pixel was multiplied by the corresponding value in the efficiency map contained in file eff_2023_10.gumtree.hdf, after which all non-zero pixels at each angle were summed vertically and the final values output after adjusting for the variable number of non-zero pixels at each angle.

The detector/x_pixel_angular_offset raw data file entry gives the angular boundaries of each detector pixel. These values were used to derive pixel centres, which were then added to sample/azimuthal_angle to give the final angular values found in the reduced data file.
DOI: 10.5281/zenodo.15043491
title: Datasets for determination of the resolution function of the Wombat High Intensity Neutron Diffraction instrument: focussing Ge115 monochromator

description: Wombat is a high-intensity neutron diffraction instrument located at the OPAL reactor, Sydney, Australia. This dataset is one of a series collected to completely characterise the resolution of the instrument in different configurations.

For this dataset, data were collected from LaB6 and  Na2Ca3Al2F14 (NAC) samples at varying takeoff angles and wavelengths, with a traditional focussing monochromator built out of stacked Ge115 crystals at the monochromator position. This is the most commonly-used monochromator on Wombat.

The files ending in .nx.hdf are raw data files conforming to the NeXus standard (see nexusformat.org). The files ending in .xyd are three-column ASCII reduced data derived from the corresponding raw data NeXus file, with the columns being angle, intensity and standard uncertainty of that intensity. The compound (LaB6/NAC) and monochromator hkl used are included in the reduced data file name. '_mtth=nnn_' refers to a takeoff angle of 'nnn' degrees, and "no_PG/PG" refers to the absence/presence of a pyrolytic graphite filter to remove harmonic contamination. The files ending in .cif contain the same reduced data as the .xyd files, together with additional metadata regarding data reduction and collection.



In order to obtain the reduced data from the raw data, Monitor 1 counts were used to scale the data to 1000 monitor counts. Following this each pixel was multiplied by the corresponding value in the efficiency map contained in file eff_2023_10.gumtree.hdf, after which all non-zero pixels at each angle were summed vertically and the final values output after adjusting for the variable number of non-zero pixels at each angle.

The detector/x_pixel_angular_offset raw data file entry gives the angular boundaries of each detector pixel. These values were used to derive pixel centres, which were then added to sample/azimuthal_angle to give the final angular values found in the reduced data file.