cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29105818
title: Additional file 3 of Association of secondary metabolite gene clusters with host-specific lineages of the cereal blast fungus Pyricularia oryzae

description: Additional file 3: Dataset S1. Maximum-likelihood tree based on 2655 BUSCOs present in 68 strains of P. oryzae. Dataset S2. Maximum-likelihood tree based on 2557 BUSCOs present in 71 strains of P. oryzae and P. grisea. Dataset S3. Amino acid sequences of 2655 BUSCOs present in 68 strains of P. oryzae. Dataset S4. Amino acid sequence alignments of 2655 BUSCOs present in 68 strains of P. oryzae. Dataset S5. Best partitioning scheme used to construct Maximum-likelihood tree for P. oryzae strains. Dataset S6. Amino acid sequences of 2557 BUSCOs present in 71 strains of P. oryzae and P. grisea. Dataset S7. Amino acid sequence alignments of 2557 BUSCOs present in 71 strains of P. oryzae and P. grisea. Dataset S8. Manually curated gene models from Oryza-lineage-specific BGC-O1. Dataset S9. Amino acid sequences of the subset of rPKS (MGG_08236) homologs in Pezizomycotina group. Dataset S10. Amino acid sequence alignments of the subset of rPKS (MGG_08236) homologs in Pezizomycotina group. Dataset S11. Maximum-likelihood tree based on the subset of rPKS (MGG_08236) homologs in Pezizomycotina group.
DOI: 10.6084/m9.figshare.29105818.v1
title: Additional file 3 of Association of secondary metabolite gene clusters with host-specific lineages of the cereal blast fungus Pyricularia oryzae

description: Additional file 3: Dataset S1. Maximum-likelihood tree based on 2655 BUSCOs present in 68 strains of P. oryzae. Dataset S2. Maximum-likelihood tree based on 2557 BUSCOs present in 71 strains of P. oryzae and P. grisea. Dataset S3. Amino acid sequences of 2655 BUSCOs present in 68 strains of P. oryzae. Dataset S4. Amino acid sequence alignments of 2655 BUSCOs present in 68 strains of P. oryzae. Dataset S5. Best partitioning scheme used to construct Maximum-likelihood tree for P. oryzae strains. Dataset S6. Amino acid sequences of 2557 BUSCOs present in 71 strains of P. oryzae and P. grisea. Dataset S7. Amino acid sequence alignments of 2557 BUSCOs present in 71 strains of P. oryzae and P. grisea. Dataset S8. Manually curated gene models from Oryza-lineage-specific BGC-O1. Dataset S9. Amino acid sequences of the subset of rPKS (MGG_08236) homologs in Pezizomycotina group. Dataset S10. Amino acid sequence alignments of the subset of rPKS (MGG_08236) homologs in Pezizomycotina group. Dataset S11. Maximum-likelihood tree based on the subset of rPKS (MGG_08236) homologs in Pezizomycotina group.
DOI: 10.15468/dl.89cwm9
title: Occurrence Download

description: A dataset containing 2302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.88516121040347",
 "DecimalLongitude is less than 6.88822076358786",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 2302 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046428-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjggj6
title: Occurrence Download

description: A dataset containing 1009134 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plethodontidae"
 ]
}

 The dataset includes 1009134 records from 474 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046400-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97mdft
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-114.2688 31.04913, -114.1188 31.04913, -114.1188 31.19913, -114.2688 31.19913, -114.2688 31.04913))"
 ]
}

 The dataset includes 221 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046429-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14968978
title: Dataset for Gurunian et al. "Biomolecular Condensates Can Induce Local Membrane Potentials." Small (2025): e09591.

description: Contains raw data, analysis files and code corresponding to publication:


A. Gurunian, K. Lasker, and A. A. Deniz, “Biomolecular Condensates Can Induce Local Membrane Potentials.” Small (2025): e09591. https://doi.org/10.1002/smll.202509591

For use, please also cite the above publication.
DOI: 10.5281/zenodo.14968977
title: Dataset for Gurunian et al. "Biomolecular Condensates Can Induce Local Membrane Potentials." Small (2025): e09591.

description: Contains raw data, analysis files and code corresponding to publication:


A. Gurunian, K. Lasker, and A. A. Deniz, “Biomolecular Condensates Can Induce Local Membrane Potentials.” Small (2025): e09591. https://doi.org/10.1002/smll.202509591

For use, please also cite the above publication.
DOI: 10.5281/zenodo.17655068
title: αvβ6/αvβ1 integrin inhibitor bexotegrast targets pathologic cells in fibrotic human lung tissue

description: Summary:

This dataset includes single-nuclei RNA-sequencing (snRNA-seq) data obtained from fibrotic human precision-cut lung slices (PCLS) that was generated to support the publication of the article, “αvβ6/αvβ1 integrin inhibitor bexotegrast targets pathologic cells in fibrotic human lung tissue”. This study was designed to assess the pharmacodynamics of the compound bexotegrast, a dual inhibitor of TGF-b-activating integrins, in inhibiting targeted TGF-b signaling in pathologic cells of the fibrotic lung.

 

Files:

avb6_avb1_integrin_inhibitor_bexotegrast_publication.rds: merged samples from n = 19 human PCLS samples (112,979 total nuclei) as a Seurat object.

avb6_avb1_integrin_inhibitor_bexotegrast_publication.tsv: metadata with sample treatment type (vehicle, bexotegrast, ALK5i) and cell type annotation.

 

Methods:

Library preparation and sequencing technology: 10X Genomics 3’ RT Chip M, Illumina NovaSeq S4.

Data analysis: Seurat 4.3.0 was used for all processing and analyses. Nuclei with less than 500 genes and more than 4000 genes and with 10% or greater mtDNA content were filtered out. Genes not present in at least 3 nuclei were filtered out. Samples were merged and data was normalized and scaled. PCA was performed followed by batch reduction using Harmony 1.2.0. Clusters were identified using FindClusters and a projection of the nuclei was generated with RunUMAP.
DOI: 10.5281/zenodo.17655069
title: αvβ6/αvβ1 integrin inhibitor bexotegrast targets pathologic cells in fibrotic human lung tissue

description: Summary:

This dataset includes single-nuclei RNA-sequencing (snRNA-seq) data obtained from fibrotic human precision-cut lung slices (PCLS) that was generated to support the publication of the article, “αvβ6/αvβ1 integrin inhibitor bexotegrast targets pathologic cells in fibrotic human lung tissue”. This study was designed to assess the pharmacodynamics of the compound bexotegrast, a dual inhibitor of TGF-b-activating integrins, in inhibiting targeted TGF-b signaling in pathologic cells of the fibrotic lung.

 

Files:

avb6_avb1_integrin_inhibitor_bexotegrast_publication.rds: merged samples from n = 19 human PCLS samples (112,979 total nuclei) as a Seurat object.

avb6_avb1_integrin_inhibitor_bexotegrast_publication.tsv: metadata with sample treatment type (vehicle, bexotegrast, ALK5i) and cell type annotation.

 

Methods:

Library preparation and sequencing technology: 10X Genomics 3’ RT Chip M, Illumina NovaSeq S4.

Data analysis: Seurat 4.3.0 was used for all processing and analyses. Nuclei with less than 500 genes and more than 4000 genes and with 10% or greater mtDNA content were filtered out. Genes not present in at least 3 nuclei were filtered out. Samples were merged and data was normalized and scaled. PCA was performed followed by batch reduction using Harmony 1.2.0. Clusters were identified using FindClusters and a projection of the nuclei was generated with RunUMAP.
DOI: 10.15468/dl.kqvp3h
title: Occurrence Download

description: A dataset containing 2505 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.88822076358786",
 "DecimalLongitude is less than 6.89128031677226",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 2505 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046430-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/h7z6gn
title: Wright Casebook Edited; Docketed Case: 84-5723
DOI: 10.7910/dvn/fphhfx
title: Wright Casebook Edited; Docketed Case: 78-1776
DOI: 10.7910/dvn/6haxgp
title: Replication Data for: Trade Openness, Foreign Direct Investment and Child Labor (with Indra De Soysa), World Development, 33 (1), 2005, pp. 43-63

description: The skeptics of globalization argue that increased trade openness and foreign direct
investment induce developing countries to keep labor costs low, for example, by letting children
work. This article argues that there are good theoretical reasons why globalization might actually
have the opposite effect.We test this with various measures of childlabor and providethe first anal-
ysis of foreign investment in addition to trade. We present evidence that countries that are more
open to trade and/or have a higher stock of foreign direct investment also have a lower incidence
of child labor. This holds for the labor force participation rate of 10–14-year old children, the sec-
ondary school nonattendance rate and a count measure of economic sectors with child labor inci-
dence as the dependent variables. Globalization is associated with less, not more, child labor
DOI: 10.7910/dvn/98k5om
title: Wright Casebook Edited; Docketed Case: 17,788
DOI: 10.7910/dvn/qfpfhe
title: CES 2020, Team Module of Florida State University (FSU)

description: This dataverse contains the data and supporting documents for the CES 2020 Team Module of Florida State University. This project was supported by the National Science Foundation, Grant Number SES-1948863.
DOI: 10.7910/dvn/a0j6qj
title: Petition of Simon Athearn

description: &lt;p&gt;Petition subject: Incorporation &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:28548610"&gt;http://nrs.harvard.edu/urn-3:FHCL:28548610&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: 1692-06 &lt;/p&gt; &lt;p&gt;Petition location: Edgartown &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Simon Athearn&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Total signatures: 1 &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 1 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: ["Martha's Vineyard representative"] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Native American tribe: Aquinnah &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt; &lt;p&gt;Additional archivist notes: Martha's Vineyard, Elizabeth Islands, families, appointments, Boston, Chappaquiddick, Chilmark, Edgartown, Nantucket, New York, [Tickanoman's Neck, Nomans Land?], [Natuk], Tisbury, Holmes Hole, Weahtaqua Springs, town incorporation, boundaries, sheriffs, county courts, constables, clergy, religious, Benjamin Skiffe, Thomas Dogget, Joseph Norton, Jacob Norton, John Butler, Isaac Chase, Thomas Mayhew, John Gardner, John Manter, William Phips &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Massachusetts Archives volume 112, page 422 &lt;/p&gt;
DOI: 10.7910/dvn/ffx1an
title: Subreddit Birth Control 2011-2020

description: This dataset collects 105,485 Reddit posts, post metadata, from the subreddit: between 2011-2020
DOI: 10.7910/dvn/fgafcy
title: Data for: Ontological Security under Stigma

description: For reference, this dataset contains PDFs 'freezing' the otherwise potentially volatile websites cited in a (forthcoming) paper titled "The Diplomacy of Post-Soviet De Facto States: Ontological Security under Stigma".
DOI: 10.7910/dvn/q8rokb
title: Wright Casebook Edited; Docketed Case: 17,592
DOI: 10.7910/dvn/ws0oly
title: Replication data for: A Seemingly Unrelated Regression Model for Analyzing Multiparty Elections

description: This paper develops an estimator for models of election returns in multiparty elections. It shares the same functional formas the Katz–King estimator but is computationally simpler, can be used with any number of parties, and is based on more conventional distributional assumptions. Small sample properties of the estimator are derived, which makes it particularly useful in many of the applications where there are a relatively small number of voting districts. The distributional assumptions are contained in two elements. The first treats the observed votes as the outcomes resulting from sampling the voters in each district. The second stochastic element arises from the usual treatment of the stochastic term in a regression model, namely, the inability of the included variables and the linear form to match the underlying process perfectly. The model is then used to analyze the 1993 Polish parliamentary elections. The results from this analysis are used to develop Monte Carlo experiments comparing several different yet feasible estimators. The conclusion is that a number of accessible estimators, including the standard seemingly unrelated regression model and the Beck–Katz model with panel-corrected standard errors, are all good choices.
DOI: 10.7910/dvn/gmruhc
title: Replication Data for: Heterogeneous firms under regional temperature shocks: exit and reallocation, with evidence from Indonesia

description: Codes and data to replicate tables and figures in the paper
DOI: 10.7910/dvn/6f2hm
title: Senate Unpassed Legislation 1838, Docket 10274, SC1/series 231, Petition of William H. Sanford

description: &lt;p&gt;Petition subject: Repeal all laws making any distinctions on account of color &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:11857843"&gt;http://nrs.harvard.edu/urn-3:FHCL:11857843&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Boylston &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: Special joint committee &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;William H. Sanford&lt;/li&gt;&lt;li&gt;Harriet S. Sanford&lt;/li&gt;&lt;li&gt;Lydia H. Hooper&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1838-04-06,1838-04-06 &lt;/p&gt; &lt;p&gt;Legislative action: Senate joint special committee reported and accepted inexpediant to legislate on April 6, 1838 and sent for concurrence and received in the House on April 6, 1838 and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 157 &lt;/p&gt; &lt;p&gt;Legislative action summary: Reported, accepted, inexpediant, sent, received, concurred &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 66 &lt;/p&gt; &lt;p&gt;Female signatures: 91 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: inhabitants, [females] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Printed &lt;/p&gt; &lt;p&gt;Signatory column format: column separated &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: no additional documents &lt;/p&gt; &lt;p&gt;Additional archivist notes: One female signature in male column, signature numbers different from front of petition &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Senate Unpassed 1838, Docket 10274 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/h4o0re
title: Replication Data for: Healthy menstruation

description: Resting state brain activities measured using MEG
DOI: 10.7910/dvn/qdfdke
title: Replication Data for: Asymptotics of Cointegration Tests for High-Dimensional VAR(k)

description: Review of Economics and Statistics: Forthcoming.
description: Volume XX, Issue X
DOI: 10.7910/dvn/sgokwb
title: Development of Tearing Instability in a Current Sheet Forming by Sheared Incompressible Flow

description: Sweet-Parker current sheets in high Lundquist number plasmas are unstable to tearing, suggesting they will not form in physical systems. Understanding magnetic reconnection thus requires study of the stability of a current sheet as it forms. Formation can occur due to sheared, sub-Alfvenic incompressible flows which narrow the sheet. Standard tearing theory (Furth et al. 1963; Coppi et al. 1976; Rutherford 1973) is not immediately applicable to such forming sheets for two reasons: first, because the flow introduces terms not present in the standard calculation; second, because the changing equilibrium introduces time dependence to terms which are constant in the standard calculation, complicating the formulation of an eigenvalue problem. This paper adapts standard tearing mode analysis to confront these challenges. In an initial phase when any perturbations are primarily governed by ideal MHD, a coordinate transformation reveals that the flow compresses and stretches perturbations. A multiple scale formulation describes how linear tearing mode theory (Furth et al. 1963; Coppi et al. 1976) can be applied to an equilibrium changing under flow, showing that tearing eigenfunctions grow slowly due to the flow and undergo exponential growth at a rate given by standard scalings with time dependence added. In the nonlinear Rutherford stage, the coordinate transformation shows that standard theory can be adapted by adding to the stationary rates time dependence and an additional term due to the strengthening equilibrium magnetic field. Overall, this understanding supports the use of flow-free scalings with slight modifications to study tearing in a forming sheet.
description: PSFC REPORT PSFC/JA-17-39<br><br>This work was supported by The National Science Foundation Graduate Research Fellowship under Grant No. 1122374; NSF-DOE Partnership in Basic Plasma Science and Engineering, Award No. DE-SC0016215; DOE Award No. DE-SC0008409 (for our collaborator at the University of Colorado); and NASA Award No. NNX16AB28G (for our collaborator at the University of Colorado).
DOI: 10.7910/dvn/8ddhhm
title: Wright Files I-Z Edited; Docketed Case: 20096
DOI: 10.7910/dvn/6bgjct
title: Replication data for: Intergenerational Spillovers of Integration Policies: Evidence from Finland’s Integration Plans

description: Review of Economics and Statistics: Forthcoming.
description: Volume XX, Issue X
DOI: 10.7910/dvn/geg7gu
title: Wright Files I-Z Edited; Docketed Case: 21327
DOI: 10.7910/dvn/qeatcb
title: Wright Casebook Edited; Docketed Case: 76-1105
DOI: 10.7910/dvn/doetvc
title: Replication Data for: 'Ownership, Learning, and Beliefs'

description: The data and programs replicate tables and figures from "Ownership, Learning, and Beliefs", by Hartzmark, Hirshman, and Imas.
DOI: 10.7910/dvn/5snqqt
title: Replication Data for: Dataset "P3Numbers_20150204_f_11_002" available at http://eegdatabase.kiv.zcu.cz/experiments-detail?DEFAULT_PARAM_ID=662

description: Guess the number is a simple P300-based brain-computer interface experiment. Its aim is to ask the measured participant to pick a number between 1 and 9. Then, he or she is exposed to corresponding visual stimuli and experimenters try to guess the number thought while observing event-related potential waveforms on-line. 250 school-age children participated in the experiments that were carried out in elementary and secondary schools in the Czech Republic. Electroencephalographic data from three EEG channels (Fz, Cz, Pz) and stimuli markers were stored. Additional metadata about the participants were collected (gender, age, the number thought by the participant, the guess of the experimenters, and various interesting additional information). The data are stored in the Brain Vision format.
description: Presentation, 18.1
description: Brain Vision Recorder, 1.20.0001
description: All data and metadata in this dataverse can be downloaded as an experimental package named "PROJECT DAYS P3 NUMBERS" that is available at https://eegdatabase.kiv.zcu.cz in section "All experiments"