cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10309739
title: MOESM4 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 4: Table S4. List of 127 downregulated DEGs expressed between the SCI group and the LV_SCI group.
DOI: 10.6084/m9.figshare.10309739.v1
title: MOESM4 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 4: Table S4. List of 127 downregulated DEGs expressed between the SCI group and the LV_SCI group.
DOI: 10.6084/m9.figshare.10309742
title: MOESM5 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 5: Table S5. The significant of GO terms enriched between the SCI group and the LV_SCI group 210 upregualted DEGs.
DOI: 10.6084/m9.figshare.10309742.v1
title: MOESM5 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 5: Table S5. The significant of GO terms enriched between the SCI group and the LV_SCI group 210 upregualted DEGs.
DOI: 10.6084/m9.figshare.10309748
title: MOESM6 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 6: Table S6. The significant of GO terms enriched between the SCI group and the LV_SCI group 127 downregualted DEGs.
DOI: 10.6084/m9.figshare.10309748.v1
title: MOESM6 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 6: Table S6. The significant of GO terms enriched between the SCI group and the LV_SCI group 127 downregualted DEGs.
DOI: 10.6084/m9.figshare.10309754
title: MOESM7 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 7: Table S7. The significant GO terms of exclusive 153 DEGs in LV_SCI group compared to the other two groups.
DOI: 10.6084/m9.figshare.10309754.v1
title: MOESM7 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 7: Table S7. The significant GO terms of exclusive 153 DEGs in LV_SCI group compared to the other two groups.
DOI: 10.6084/m9.figshare.10309760
title: MOESM9 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 9: Table S8. KEGG pathway enriched between the SCI and the LV_SCI 210 upregulated DEGs.
DOI: 10.6084/m9.figshare.10309760.v1
title: MOESM9 of Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats

description: Additional file 9: Table S8. KEGG pathway enriched between the SCI and the LV_SCI 210 upregulated DEGs.
DOI: 10.6084/m9.figshare.10309772
title: MOESM2 of Single-molecule real-time transcript sequencing identified flowering regulatory genes in Crocus sativus

description: Additional file 2: Table S1. Primers of Unigenes for AS validation. Table S2. Primers of differentially expressed Unigenes for real-time qRT- PCR analysis. Table S3. PacBio Iso-seq data statistics. Table S4. Summary of reads of insert (ROIs). Table S5. Homology Analysis between mRNA sequence on NCBI and full-length unigene. Table S6. Sequencing data statistics of Illumina RNA-seq. Table S7. GO enrichment analysis of AS genes. Table S8. Specific AS events in flowering saffrons and non-flowering saffron crocus. Table S9. Number of DEGs in flowering and non-flowering saffron crocus. Table S10. DEGs only expressed in flowering top buds or non-flowering cold-treated top buds. Table S11. DEGs were only expressed in flowering top buds or non-flowering top buds of small corms. Table S12. DEGs were only expressed in flowering or non-flowering lateral buds. Table S13. Flower-related DEGs in three comparable experiments.
DOI: 10.6084/m9.figshare.10309772.v1
title: MOESM2 of Single-molecule real-time transcript sequencing identified flowering regulatory genes in Crocus sativus

description: Additional file 2: Table S1. Primers of Unigenes for AS validation. Table S2. Primers of differentially expressed Unigenes for real-time qRT- PCR analysis. Table S3. PacBio Iso-seq data statistics. Table S4. Summary of reads of insert (ROIs). Table S5. Homology Analysis between mRNA sequence on NCBI and full-length unigene. Table S6. Sequencing data statistics of Illumina RNA-seq. Table S7. GO enrichment analysis of AS genes. Table S8. Specific AS events in flowering saffrons and non-flowering saffron crocus. Table S9. Number of DEGs in flowering and non-flowering saffron crocus. Table S10. DEGs only expressed in flowering top buds or non-flowering cold-treated top buds. Table S11. DEGs were only expressed in flowering top buds or non-flowering top buds of small corms. Table S12. DEGs were only expressed in flowering or non-flowering lateral buds. Table S13. Flower-related DEGs in three comparable experiments.
DOI: 10.5255/ukda-sn-856924
title: English Poor Law Cases, 1690-1815

description: This dataset of historical poor law cases was created as part of a project aiming to assess the implications of the introduction of Artificial Intelligence (AI) into legal systems in Japan and the United Kingdom. The project was jointly funded by the UK’s Economic and Social Research Council, part of UKRI, and the Japanese Society and Technology Agency (JST), and involved collaboration between Cambridge University (the Centre for Business Research, Department of Computer Science and Faculty of Law) and Hitotsubashi University, Tokyo (the Graduate Schools of Law and Business Administration). As part of the project, a dataset of historic poor law cases was created to facilitate the analysis of legal texts using natural language processing methods. The dataset contains judgments of cases which have been annotated to facilitate computational analysis. Specifically, they make it possible to see how legal terms have evolved over time in the area of disputes over the law governing settlement by hiring.
DOI: 10.5255/ukda-sn-856927
title: Cambridge Law Corpus, 1550-2023

description: The Cambridge Law Corpus (CLC) is a corpus designed for legal AI research. It consists of over 250,000 court cases from the UK. Most cases are from the 21st century, but the corpus includes cases as old as the 16th century. Together with the corpus, annotations on case outcomes for 638 cases, done by legal experts, are provided. The Word files were cleaned and transformed into an XML format. PDF files were converted to textual form via optical character recognition (OCR). The resulting text files were then converted to the XML standard format. Because of legal and ethical considerations, the full Cambridge Law Corpus (CLC) is only available for research purposes under restrictions and available via Related Resources. A smaller dataset consisting of 15 selected cases from the CLC is available on the University of Cambridge Apollo Data Repository which can be accessed via Related Resources.
DOI: 10.6084/m9.figshare.10309796
title: MOESM1 of Oscillation-specific nodal alterations in early to middle stages Parkinson’s disease

description: Additional file 1. Statistical data for the distribution of nodal properties among different oscillatory frequencies in PD patients and controls.
DOI: 10.6084/m9.figshare.10309796.v1
title: MOESM1 of Oscillation-specific nodal alterations in early to middle stages Parkinson’s disease

description: Additional file 1. Statistical data for the distribution of nodal properties among different oscillatory frequencies in PD patients and controls.
DOI: 10.6084/m9.figshare.10309832
title: MOESM2 of Identification and evaluation of reference genes for quantitative real-time PCR analysis in Polygonum cuspidatum based on transcriptome data

description: Additional file 2: Raw CT values of the 12 candidate reference genes across all samples of Polygonum cuspidatum.
DOI: 10.6084/m9.figshare.10309832.v1
title: MOESM2 of Identification and evaluation of reference genes for quantitative real-time PCR analysis in Polygonum cuspidatum based on transcriptome data

description: Additional file 2: Raw CT values of the 12 candidate reference genes across all samples of Polygonum cuspidatum.
DOI: 10.25402/pme.20267655
title: Supplementary Table – Analysis of pharmacogenomic very important pharmacogenomic variants: CYP3A5, ACE, PTGS2 and NAT2 genes in Chinese Bai population

description:   
Table S1 .Basic information of selected VIP variants.
  
Table S2. The differences in genotype frequencies of VIP loci in Bai ethnic and 26 populations after Bonferroni correction.
DOI: 10.6084/m9.figshare.21316269.v1
title: Additional file 1 of Novel six-gene prognostic signature based on colon adenocarcinoma immune-related genes

description: Additional file1. Table S1: Regulatory relationship between DEIGs and DETFs.
DOI: 10.6084/m9.figshare.19219080
title: Additional file 1 of Transcriptional regulation of metal metabolism- and nutrient absorption-related genes in Eucalyptus grandis by arbuscular mycorrhizal fungi at different zinc concentrations

description: Additional file 1: Table S1. General information of ZNT transporter genes identified in Eucalyptus grandis. Table S2. Pearson’s correlation analysis on ZNT family genes. Table S3. Pearson’s correlation analysis on COPT/Ctr family genes. Table S4. Pearson’s correlation analysis on YSL family genes. Table S5. Pearson’s correlation analysis on ZIFL family genes. Table S6. Pearson’s correlation analysis on HMA family genes. Table S7. Pearson’s correlation analysis on CE/MTP family genes. Table S8. Pearson’s correlation analysis on PHT family genes. Table S9. Pearson’s correlation analysis on AMT and NRT family genes. Table S10. Pearson’s correlation analysis on Potassium transporters family genes.
DOI: 10.6084/m9.figshare.21316278
title: Additional file 4 of Novel six-gene prognostic signature based on colon adenocarcinoma immune-related genes

description: Additional file4. TCGA data.
DOI: 10.6084/m9.figshare.21316275
title: Additional file 3 of Novel six-gene prognostic signature based on colon adenocarcinoma immune-related genes

description: Additional file3. TCGA clinical data.
DOI: 10.6084/m9.figshare.9785603
title: Computational determination of binding modes of 2-acetoxyphenylhept-2-ynyl sulfide to cyclooxygenase-2

description: 2-Acetoxyphenylhept-2-ynyl sulfide (APHS) is a potent covalent inhibitor with cyclooxygenase-2 (COX-2) selectivity. However, no crystal structure for APHS‒COX-2 complex has been reported. In this work, we have extensively studied the binding modes and interactions between APHS and COX-2. Molecular docking followed by MD simulations identified a stable and reactive binding mode, of which the calculated binding free energy was in good agreement with the experimental reports. Furthermore, binding modes of six analogs of APHS were also analyzed to study the effects on binding affinity of the triple bond, heteroatom and length of alkyl chain. The findings help to understand the action mechanisms of APHS and explain why it is more potent than the analogs, which might be useful in the design of new compounds with higher inhibitory activity to COX-2. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.9785603.v2
title: Computational determination of binding modes of 2-acetoxyphenylhept-2-ynyl sulfide to cyclooxygenase-2

description: 2-Acetoxyphenylhept-2-ynyl sulfide (APHS) is a potent covalent inhibitor with cyclooxygenase-2 (COX-2) selectivity. However, no crystal structure for APHS‒COX-2 complex has been reported. In this work, we have extensively studied the binding modes and interactions between APHS and COX-2. Molecular docking followed by MD simulations identified a stable and reactive binding mode, of which the calculated binding free energy was in good agreement with the experimental reports. Furthermore, binding modes of six analogs of APHS were also analyzed to study the effects on binding affinity of the triple bond, heteroatom and length of alkyl chain. The findings help to understand the action mechanisms of APHS and explain why it is more potent than the analogs, which might be useful in the design of new compounds with higher inhibitory activity to COX-2. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.21316272.v1
title: Additional file 2 of Novel six-gene prognostic signature based on colon adenocarcinoma immune-related genes

description: Additional file2. Table S2: DEIGs (multivariate Cox regression analysis) and regression coefficient.
DOI: 10.6084/m9.figshare.21316269
title: Additional file 1 of Novel six-gene prognostic signature based on colon adenocarcinoma immune-related genes

description: Additional file1. Table S1: Regulatory relationship between DEIGs and DETFs.
DOI: 10.6084/m9.figshare.21316272
title: Additional file 2 of Novel six-gene prognostic signature based on colon adenocarcinoma immune-related genes

description: Additional file2. Table S2: DEIGs (multivariate Cox regression analysis) and regression coefficient.
DOI: 10.6084/m9.figshare.21316275.v1
title: Additional file 3 of Novel six-gene prognostic signature based on colon adenocarcinoma immune-related genes

description: Additional file3. TCGA clinical data.
DOI: 10.6084/m9.figshare.19219320
title: Additional file 2 of Comparison of structural variants in the whole genome sequences of two Medicago truncatula ecotypes: Jemalong A17 and R108

description: Additional file 2.
DOI: 10.6084/m9.figshare.10310018
title: MOESM1 of The associations between screen time-based sedentary behavior and depression: a systematic review and meta-analysis

description: Additional file 1. Detailed characteristics of the included studies.
DOI: 10.6084/m9.figshare.10310018.v1
title: MOESM1 of The associations between screen time-based sedentary behavior and depression: a systematic review and meta-analysis

description: Additional file 1. Detailed characteristics of the included studies.
DOI: 10.6084/m9.figshare.10310024
title: MOESM2 of The associations between screen time-based sedentary behavior and depression: a systematic review and meta-analysis

description: Additional file 2. Methodological quality assessment checklist for observational studies.
DOI: 10.6084/m9.figshare.10310024.v1
title: MOESM2 of The associations between screen time-based sedentary behavior and depression: a systematic review and meta-analysis

description: Additional file 2. Methodological quality assessment checklist for observational studies.
DOI: 10.6084/m9.figshare.20267813.v1
title: Additional file 4 of scSTEM: clustering pseudotime ordered single-cell data

description: Additional file 4. GO enrichment analysis results for clusters presented in Fig. 5.
DOI: 10.6084/m9.figshare.20267810
title: Additional file 3 of scSTEM: clustering pseudotime ordered single-cell data

description: Additional file 3. Gene IDs for clusters presented in Fig. 5.
DOI: 10.6084/m9.figshare.20267804
title: Additional file 1 of scSTEM: clustering pseudotime ordered single-cell data

description: Additional file 1. Gene cluster sizes, profile sizes, and p-values for each combination of trajectory inference method and gene summarization metric; Number of NK cell markers for the clusters presented in Fig. 5.
DOI: 10.6084/m9.figshare.20267810.v1
title: Additional file 3 of scSTEM: clustering pseudotime ordered single-cell data

description: Additional file 3. Gene IDs for clusters presented in Fig. 5.
DOI: 10.6084/m9.figshare.20267813
title: Additional file 4 of scSTEM: clustering pseudotime ordered single-cell data

description: Additional file 4. GO enrichment analysis results for clusters presented in Fig. 5.
DOI: 10.6084/m9.figshare.7164341
title: Additional file 10: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

description: Table S4. Elements relate to hormone and stress in the promotor of CRFs predicted by PLACE.Table S5. Elements relate to hormone and stress in the promotor of CRFs predicted by PlantCARE. (XLS 39 kb)
DOI: 10.5281/zenodo.10679384
title: KARYER SUVLARIDAN OQILONA FOYDALANISH ORQALI, KARYERLARDA CHANG VA ZAHARLI GAZLARNI NEYTRALLASHTIRISH
DOI: 10.5281/zenodo.10679385
title: KARYER SUVLARIDAN OQILONA FOYDALANISH ORQALI, KARYERLARDA CHANG VA ZAHARLI GAZLARNI NEYTRALLASHTIRISH
DOI: 10.6084/m9.figshare.24465863
title: Structural basis of properties, mechanisms, and channelopathy of cyclic nucleotide-gated channels

description: Recent years have seen an outpouring of atomic or near atomic resolution structures of cyclic nucleotide-gated (CNG) channels, captured in closed, transition, pre-open, partially open, and fully open states. These structures provide unprecedented molecular insights into the activation, assembly, architecture, regulation, and channelopathy of CNG channels, as well as mechanistic explanations for CNG channel biophysical and pharmacological properties. This article summarizes recent advances in CNG channel structural biology, describes key structural features and elements, and illuminates a detailed conformational landscape of activation by cyclic nucleotides. The review also correlates structures with findings and properties delineated in functional studies, including nonselective monovalent cation selectivity, Ca<sup>2+</sup> permeation and block, block by L-<i>cis</i>-diltiazem, location of the activation gate, lack of voltage-dependent gating, and modulation by lipids and calmodulin. A perspective on future research is also offered.
DOI: 10.6084/m9.figshare.24465863.v1
title: Structural basis of properties, mechanisms, and channelopathy of cyclic nucleotide-gated channels

description: Recent years have seen an outpouring of atomic or near atomic resolution structures of cyclic nucleotide-gated (CNG) channels, captured in closed, transition, pre-open, partially open, and fully open states. These structures provide unprecedented molecular insights into the activation, assembly, architecture, regulation, and channelopathy of CNG channels, as well as mechanistic explanations for CNG channel biophysical and pharmacological properties. This article summarizes recent advances in CNG channel structural biology, describes key structural features and elements, and illuminates a detailed conformational landscape of activation by cyclic nucleotides. The review also correlates structures with findings and properties delineated in functional studies, including nonselective monovalent cation selectivity, Ca<sup>2+</sup> permeation and block, block by L-<i>cis</i>-diltiazem, location of the activation gate, lack of voltage-dependent gating, and modulation by lipids and calmodulin. A perspective on future research is also offered.
DOI: 10.6084/m9.figshare.20267685.v1
title: Additional file 1 of Network-based inference of master regulators in epithelial membrane protein 2-treated human RPE cells

description: Additional file 1.
DOI: 10.6084/m9.figshare.10310153
title: MOESM3 of EZH2 negatively regulates PD-L1 expression in hepatocellular carcinoma

description: Additional file 3: Table S7. The genes predicted in Fig. 3c.
DOI: 10.6084/m9.figshare.10310153.v1
title: MOESM3 of EZH2 negatively regulates PD-L1 expression in hepatocellular carcinoma

description: Additional file 3: Table S7. The genes predicted in Fig. 3c.
DOI: 10.6084/m9.figshare.10310159
title: MOESM4 of EZH2 negatively regulates PD-L1 expression in hepatocellular carcinoma

description: Additional file 4: Table S8. List of differentially expressed gene between immune-activated and immune-suppressed HCC tissues screened by transcriptome.
DOI: 10.6084/m9.figshare.10310159.v1
title: MOESM4 of EZH2 negatively regulates PD-L1 expression in hepatocellular carcinoma

description: Additional file 4: Table S8. List of differentially expressed gene between immune-activated and immune-suppressed HCC tissues screened by transcriptome.
DOI: 10.6084/m9.figshare.19743441.v1
title: Additional file 3 of Novel Chloroflexi genomes from the deepest ocean reveal metabolic strategies for the adaptation to deep-sea habitats

description: Additional file 2. Supplementary tables.
DOI: 10.6084/m9.figshare.19219320.v1
title: Additional file 2 of Comparison of structural variants in the whole genome sequences of two Medicago truncatula ecotypes: Jemalong A17 and R108

description: Additional file 2.
DOI: 10.6084/m9.figshare.20267649
title: Additional file 4 of Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates the severity of DSS colitis

description: Additional file 4: Supplementary Table S6. VLP scaffolds shared between the VLP inoculums and HMA-mice post VLP gavage. Scaffolds shared between the healthy VLP inoculum samples and mice given healthy VLPs (tab 1). Scaffolds shared between the UC VLP inoculum samples and mice given UC VLPs (tab 2). Related to Fig. 5.
DOI: 10.15468/dl.ccuqga
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Naso vlamingii)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188222-230224095556074/datasets/export for details.
DOI: 10.15468/dl.2p4cbr
title: Occurrence Download

description: A dataset containing 6076610 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6076610 records from 916 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000124-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvktth
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Pseudophycis bachus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188226-230224095556074/datasets/export for details.
DOI: 10.15468/dl.ppjzjz
title: Occurrence Download

description: A dataset containing 349337 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Daucus carota L."
 ]
}

 The dataset includes 349337 records from 876 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021939-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzz8w5
title: Occurrence Download

description: A dataset containing 26756 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Falco rusticolus Linnaeus, 1758"
 ]
}

 The dataset includes 26756 records from 193 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092804-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtw3gp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astracantha sicula (Biv.) Greuter",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092806-240321170329656/datasets/export for details.