cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.v2q5m9
title: Occurrence Download

description: A dataset containing 1315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.2_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Himantopus himantopus (Linnaeus, 1758)",
 "Year 2020-2025"
 ]
}

 The dataset includes 1315 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009901-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64dgwk
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Viburnum integrifolium Newberry, 1894)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 54 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009904-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.be38up
title: Occurrence Download

description: A dataset containing 9520 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-79.947 43.266,-79.94 43.266,-79.94 43.27,-79.947 43.27,-79.947 43.266))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9520 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009903-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zq6x2x
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Muestreo de mamíferos terrestres en la Finca La Moraleja, Salta, Argentina.",
 "EventId is 02_la moraleja:cr1"
 ]
}

 The dataset includes 51 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009906-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15262924
title: Dane
DOI: 10.15468/dl.74bknb
title: Occurrence Download

description: A dataset containing 744 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Viburnum japonicum (Thunb.) Spreng.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 744 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009907-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15262923
title: Dane
DOI: 10.5281/zenodo.15263065
title: Dane
DOI: 10.6084/m9.figshare.28840508
title: Sequence alignments, table and phylogenetic tree for Septoria reinamora, Fungal Planet description sheets June 2025

description: Sequence alignments, table and phylogenetic tree for Septoria reinamora
DOI: 10.5281/zenodo.15261773
title: Comparing FAIR Assessment Tools and their Alignment with FAIR Implementation Profiles using Digital Humanities Datasets

description: FAIR Assessment Results of Two Digital Humanities Datasets and Some Comparison with Their Corresponding FAIR Implementation Profiles

Andre Valdestilhas (VU Amsterdam), 

Menzo Windhouwer (KNAW - Humanities Cluster), 

Ronald Siebes  (VU Amsterdam), 

Shuai Wang  (VU Amsterdam and Maastricht University)

Contact: Andre Valdestilhas (a.valdestilhas@vu.nl)

This repository consists of supplementary materials corresponding to the research paper titled Comparing FAIR Assessment Tools and Their Alignment with FAIR Implementation Profiles using Digital Humanities Datasets, that is to be presented at the International Workshop of Semantic Digital Humanities (SemDH) Workshop, co-collated with the Extended Semantic Web Conference (ESWC) 2025.

The ZIP file consists of the following folders. 





The ./FIPs folder consists of details of the two FIPs used: one corresponding to the CLARIN community, and the other corresponds to the ODISSEI Portal community. Note that the former is a large infrastructure with many subcommunities. The latter is a subcommunity of ODISSEI. The FIPs were created using the FIP Wizard (https://fip-wizard.ds-wizard.org/wizard/). The nanopublications were included as well.  The latest version of the corresponding FIPs, FICs, and related FERs can be found on the FAIR Connect portal: https://fairconnect.pro/search-fair-nanopublications/. 




The folder ./FAIR_Assessment consists of the results from the two FAIR assessment tools. The assessment were conducted on 18th April 2025. The result of the FAIR Cheker were obtained from its web server. The results of the FAIR Enough were obtained from a local instance of the Docker image. 




In the current directory, you can see the file Assessment_Results_and_Evalaution. This document consists of five tabs:







The first one corresponds to the Research Question 1 (RQ1). We study how the FAIR Assessment Metrics align with the questions of FIP. The first column is the (sub-)principles of FAIR and the columns corresponds to FAIR Checker, FAIR Enough, and the FAIR Implementation Profile (FIP). Note that there is no perfect alignment. Sometimes there are cases of one-to-multiple. In this project, we tried our best to stick with a one-to-one mapping unless there is nothing to be matched with. 




The second and third tabs are the FAIR Assessment results of FIR Checker and FAIR Enough respectively. The results correspond to the documents mentioned above in the FAIR_Assessment Folder. This was used for answering RQ2.




The last two tabs correspond to the comparison of FAIR assessment results with FIPs. Column D was highlighted. It is for a comparison of the overlapping metrics of the two FATs. Moreover, we studied if their assessment results align. 




The last two columns are about the FIPs. Assessment results can be found in the paper.
DOI: 10.5281/zenodo.15261774
title: Comparing FAIR Assessment Tools and their Alignment with FAIR Implementation Profiles using Digital Humanities Datasets

description: FAIR Assessment Results of Two Digital Humanities Datasets and Some Comparison with Their Corresponding FAIR Implementation Profiles

Andre Valdestilhas (VU Amsterdam), 

Menzo Windhouwer (KNAW - Humanities Cluster), 

Ronald Siebes  (VU Amsterdam), 

Shuai Wang  (VU Amsterdam and Maastricht University)

Contact: Andre Valdestilhas (a.valdestilhas@vu.nl)

This repository consists of supplementary materials corresponding to the research paper titled Comparing FAIR Assessment Tools and Their Alignment with FAIR Implementation Profiles using Digital Humanities Datasets, that is to be presented at the International Workshop of Semantic Digital Humanities (SemDH) Workshop, co-collated with the Extended Semantic Web Conference (ESWC) 2025.

The ZIP file consists of the following folders. 





The ./FIPs folder consists of details of the two FIPs used: one corresponding to the CLARIN community, and the other corresponds to the ODISSEI Portal community. Note that the former is a large infrastructure with many subcommunities. The latter is a subcommunity of ODISSEI. The FIPs were created using the FIP Wizard (https://fip-wizard.ds-wizard.org/wizard/). The nanopublications were included as well.  The latest version of the corresponding FIPs, FICs, and related FERs can be found on the FAIR Connect portal: https://fairconnect.pro/search-fair-nanopublications/. 




The folder ./FAIR_Assessment consists of the results from the two FAIR assessment tools. The assessment were conducted on 18th April 2025. The result of the FAIR Cheker were obtained from its web server. The results of the FAIR Enough were obtained from a local instance of the Docker image. 




In the current directory, you can see the file Assessment_Results_and_Evalaution. This document consists of five tabs:







The first one corresponds to the Research Question 1 (RQ1). We study how the FAIR Assessment Metrics align with the questions of FIP. The first column is the (sub-)principles of FAIR and the columns corresponds to FAIR Checker, FAIR Enough, and the FAIR Implementation Profile (FIP). Note that there is no perfect alignment. Sometimes there are cases of one-to-multiple. In this project, we tried our best to stick with a one-to-one mapping unless there is nothing to be matched with. 




The second and third tabs are the FAIR Assessment results of FIR Checker and FAIR Enough respectively. The results correspond to the documents mentioned above in the FAIR_Assessment Folder. This was used for answering RQ2.




The last two tabs correspond to the comparison of FAIR assessment results with FIPs. Column D was highlighted. It is for a comparison of the overlapping metrics of the two FATs. Moreover, we studied if their assessment results align. 




The last two columns are about the FIPs. Assessment results can be found in the paper.
DOI: 10.6084/m9.figshare.28837370
title: <b>16s rRNA sequencing for </b><b>Mapping</b><b> Pesticide-Induced Metabolic Alterations in Human Gut Bacteria</b>

description: In the mono-colonization experiments, B. ovatus was cultured in an anaerobic chamber and their identities were confirmed through phenotype verification using GAM plate streaking and PCR primers. For B. ovatus, the primers used were as follows: Forward: 5'-3' TGCAAACTRAAGATGGC and Reverse: 5'-3' CAAACTAATGGAACGCATC. After culturing for 24 hours, a 10 mL saturated bacterial culture was centrifuged and washed three times with PBS. The bacterial pellets were then resuspended in 10 × 1 mL sterile PBS in 2 mL sterile Eppendorf tubes. In the BO group, mice were colonized with <i>B. ovatus</i> ATCC8483 (approximately 8 × 10^6 colony-forming units (CFU)) obtained from the saturated cultures. This colonization process involved orally administering 200 μL of the respective cultures through gavage. On the other hand, mice in the ABX and Control groups were only orally gavaged with 200 μL of PBS. Fecal samples were collected both before and after mono-colonization for phenotype verification. The sterile water was replaced and documented every 2 days, and sterile food was refreshed and recorded on a weekly basis.Regarding pesticide exposure, once successful mono-colonization was achieved, the mice from the Control, and BO groups were subjected to a 4-week exposure to 0.1 μg/mL of 4,4’-DDE in their drinking water. Meanwhile, the mice in the ABX group received sterile water without pesticide. The drinking water was replaced and documented every 2 days, and sterile food was refreshed and recorded on a weekly basis. Prior to and after mono-colonization, 16S amplicon sequencing was performed on the V4 region (515F, 806R) of microbial populations found in individual mice's feces.
DOI: 10.15468/dl.9a2myt
title: Occurrence Download

description: A dataset containing 228429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ghana",
 "IucnRedListCategory is NE",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 228429 records from 641 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009890-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15262817
title: Supporting data for the A&S New Frontier Grant project: "Engaging Multi-Scalar Dynamics in Trans-Asia Infrastructures"

description: This dataset contains detailed information on the power system infrastructure built and operated in Laos, Thailand, Malaysia, and Singapore (up to 2023). For each country, we report information on generation and transmission network. Data on generation include name (of the power plant), location (latitude and longitued), year of construction, fuel type, and maximum capacity. Data on transmission include name (of the high-voltage transmission line), max voltage, number of circuits, source and sink bus, distance, and corresponding substation(s). For each country, we report the steps taken to collect and process both generation and transmission data. All data are available as shapefiles. Note that transmission data are not available for Singapore.
DOI: 10.5281/zenodo.15262818
title: Supporting data for the A&S New Frontier Grant project: "Engaging Multi-Scalar Dynamics in Trans-Asia Infrastructures"

description: This dataset contains detailed information on the power system infrastructure built and operated in Laos, Thailand, Malaysia, and Singapore (up to 2023). For each country, we report information on generation and transmission network. Data on generation include name (of the power plant), location (latitude and longitued), year of construction, fuel type, and maximum capacity. Data on transmission include name (of the high-voltage transmission line), max voltage, number of circuits, source and sink bus, distance, and corresponding substation(s). For each country, we report the steps taken to collect and process both generation and transmission data. All data are available as shapefiles. Note that transmission data are not available for Singapore.
DOI: 10.5281/zenodo.14391643
title: Sigilla (Base numérique des sceaux conservés en France)

description: Voir [le site web de Siglla](https://sigilla.irht.cnrs.fr/)

Depuis 2016, le programme SIGILLA permet de valoriser les collections de sceaux conservées en France par le biais de photographies numériques rassemblées dans une base de données librement accessible en ligne.

SIGILLA permet à tous de (re)découvrir les richesses de ce « petit » patrimoine qui reste pourtant le plus vaste réservoir d’images conservées du Moyen Âge et un passionnant reflet de la culture et de l’histoire de nos régions.

 
description: Ce travail a bénéficié d'une aide de l'Etat gérée par l'Agence Nationale de la Recherche au titre du Programme d'Investissements d'Avenir portant la référence ANR-21-ESRE-0005 (ÉquipEx Biblissima+).

Ce travail a également été soutenu par le Ministère de la Culture.
DOI: 10.5281/zenodo.7123373
title: Sigilla (Base numérique des sceaux conservés en France)

description: Voir [le site web de Siglla](http://www.sigilla.org/)


Depuis 2016, le programme SIGILLA permet de valoriser les collections de sceaux conservées en France par le biais de photographies numériques rassemblées dans une base de données librement accessible en ligne.


SIGILLA permet à tous de (re)découvrir les richesses de ce « petit » patrimoine qui reste pourtant le plus vaste réservoir d’images conservées du Moyen Âge et un passionnant reflet de la culture et de l’histoire de nos régions.



 
description: Ce travail a bénéficié d'une aide de l'Etat gérée par l'Agence Nationale de la Recherche au titre du Programme d'Investissements d'Avenir portant la référence ANR-21-ESRE-0005 (ÉquipEx Biblissima+). Ce travail a également été soutenu par le Ministère de la Culture. Le versement des données a été réalisé grâce au soutien du consortium COSME de la TGIR-Huma-Num.
DOI: 10.15468/dl.gz22cw
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is A New Species of Thomasomys (Rodentia: Muridae) from Eastern Ecuador, with Remarks on Mammalian Diversity and Biogeography in the Cordillera Oriental"
 ]
}

 The dataset includes 46 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009908-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.6421422
title: Sigilla (Base numérique des sceaux conservés en France)

description: Voir [le site web de Siglla](http://www.sigilla.org/)
DOI: 10.5281/zenodo.8388569
title: Sigilla (Base numérique des sceaux conservés en France)

description: Voir [le site web de Siglla](http://www.sigilla.org/) Depuis 2016, le programme SIGILLA permet de valoriser les collections de sceaux conservées en France par le biais de photographies numériques rassemblées dans une base de données librement accessible en ligne. SIGILLA permet à tous de (re)découvrir les richesses de ce « petit » patrimoine qui reste pourtant le plus vaste réservoir d’images conservées du Moyen Âge et un passionnant reflet de la culture et de l’histoire de nos régions. <br>
description: Ce travail a bénéficié d'une aide de l'Etat gérée par l'Agence Nationale de la Recherche au titre du Programme d'Investissements d'Avenir portant la référence ANR-21-ESRE-0005 (ÉquipEx Biblissima+). Ce travail a également été soutenu par le Ministère de la Culture.
DOI: 10.5281/zenodo.7785719
title: Sigilla (Base numérique des sceaux conservés en France)

description: Voir [le site web de Siglla](http://www.sigilla.org/) Depuis 2016, le programme SIGILLA permet de valoriser les collections de sceaux conservées en France par le biais de photographies numériques rassemblées dans une base de données librement accessible en ligne. SIGILLA permet à tous de (re)découvrir les richesses de ce « petit » patrimoine qui reste pourtant le plus vaste réservoir d’images conservées du Moyen Âge et un passionnant reflet de la culture et de l’histoire de nos régions. <br>
description: Ce travail a bénéficié d'une aide de l'Etat gérée par l'Agence Nationale de la Recherche au titre du Programme d'Investissements d'Avenir portant la référence ANR-21-ESRE-0005 (ÉquipEx Biblissima+). Ce travail a également été soutenu par le Ministère de la Culture.
DOI: 10.5281/zenodo.10910757
title: Sigilla (Base numérique des sceaux conservés en France)

description: Voir [le site web de Siglla](http://www.sigilla.org/)


Depuis 2016, le programme SIGILLA permet de valoriser les collections de sceaux conservées en France par le biais de photographies numériques rassemblées dans une base de données librement accessible en ligne.


SIGILLA permet à tous de (re)découvrir les richesses de ce « petit » patrimoine qui reste pourtant le plus vaste réservoir d’images conservées du Moyen Âge et un passionnant reflet de la culture et de l’histoire de nos régions.



 
description: Ce travail a bénéficié d'une aide de l'Etat gérée par l'Agence Nationale de la Recherche au titre du Programme d'Investissements d'Avenir portant la référence ANR-21-ESRE-0005 (ÉquipEx Biblissima+).

Ce travail a également été soutenu par le Ministère de la Culture.
DOI: 10.5281/zenodo.15117850
title: Sigilla (Base numérique des sceaux conservés en France)

description: Voir [le site web de Siglla](https://sigilla.irht.cnrs.fr/)

Depuis 2016, le programme SIGILLA permet de valoriser les collections de sceaux conservées en France par le biais de photographies numériques rassemblées dans une base de données librement accessible en ligne.

SIGILLA permet à tous de (re)découvrir les richesses de ce « petit » patrimoine qui reste pourtant le plus vaste réservoir d’images conservées du Moyen Âge et un passionnant reflet de la culture et de l’histoire de nos régions.

 
description: Ce travail a bénéficié d'une aide de l'Etat gérée par l'Agence Nationale de la Recherche au titre du Programme d'Investissements d'Avenir portant la référence ANR-21-ESRE-0005 (ÉquipEx Biblissima+). Ce travail a également été soutenu par le Ministère de la Culture et le Service interministériel des archives de France.
DOI: 10.5281/zenodo.15262835
title: Harmonizing Whole Life Carbon Net-Zero Pathways for New Buildings. A Four-Phase Framework - Supplementary Material

description: This supplementary file includes:1. BoQ: Bill of Quantities and Ökobaudat modules used for an Austrian Office Building. Bill of Quantities in kg/m2.2. LCIA-Emb: Embodied Life Cycle Impact Assessment (in kgCO2 eq./m2: GWPtotal, GWPbiogenic, GWPfossil, GWPluluc).3. LCIA-B6: Operational Life Cycle Impact Assessment (in kgCO2 eq./m2: GWPtotal, GWPbiogenic, GWPfossil, GWPluluc).
DOI: 10.5281/zenodo.15262836
title: Harmonizing Whole Life Carbon Net-Zero Pathways for New Buildings. A Four-Phase Framework - Supplementary Material

description: This supplementary file includes:1. BoQ: Bill of Quantities and Ökobaudat modules used for an Austrian Office Building. Bill of Quantities in kg/m2.2. LCIA-Emb: Embodied Life Cycle Impact Assessment (in kgCO2 eq./m2: GWPtotal, GWPbiogenic, GWPfossil, GWPluluc).3. LCIA-B6: Operational Life Cycle Impact Assessment (in kgCO2 eq./m2: GWPtotal, GWPbiogenic, GWPfossil, GWPluluc).
DOI: 10.5281/zenodo.15263125
title: Sigilla (Base numérique des sceaux conservés en France)

description: Voir [le site web de Siglla](https://sigilla.irht.cnrs.fr/)

Depuis 2016, le programme SIGILLA permet de valoriser les collections de sceaux conservées en France par le biais de photographies numériques rassemblées dans une base de données librement accessible en ligne.

SIGILLA permet à tous de (re)découvrir les richesses de ce « petit » patrimoine qui reste pourtant le plus vaste réservoir d’images conservées du Moyen Âge et un passionnant reflet de la culture et de l’histoire de nos régions.

 
description: Ce travail a bénéficié d'une aide de l'Etat gérée par l'Agence Nationale de la Recherche au titre du Programme d'Investissements d'Avenir portant la référence ANR-21-ESRE-0005 (ÉquipEx Biblissima+). Ce travail a également été soutenu par le Ministère de la Culture et le Service interministériel des archives de France.
DOI: 10.15468/dl.r2u8ug
title: Occurrence Download

description: A dataset containing 247961 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelonia mydas (Linnaeus, 1758)"
 ]
}

 The dataset includes 247961 records from 494 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009895-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8r46e
title: Occurrence Download

description: A dataset containing 1112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Hymenoptera Eastern Fennoscandia (Luomus), Ants of mole burrows in the forest zone of Western Siberia, AntWeb, International Barcode of Life project (iBOL), Field workshop on data publishing in Ethnographic and ecological park \"Yugra\" (Megion, 1-3 July 2019). Biodiversity assessement., 2019 ForBio and UiO International Dead Wood Course. Biodiversity assessement)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Camponotus Mayr, 1861"
 ]
}

 The dataset includes 1112 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009910-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gz7bvq
title: Occurrence Download

description: A dataset containing 7117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Viburnum betulifolium Batalin)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7117 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009909-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14922190
title: There is no title

description: Software and Data for manuscript 'A model study on the impact of islands on the cross-shelf transport among the Pearl River Estuary, its adjacent coast and inner shelf'.

This repository contains three files

(1) Model configuration file for the 'Isl' and 'Noi' experiments;

(2) A modified version of the COAWST source code used in the numerical experimentsand;

(3) Runoff data in the model.

Model forcing files (Boundary, Surface, Nudging) exceeds the size limit, thus are not uploaded in this repo.