cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11384241.v2
title: DepMap 19Q4 Public

description: This dataset contains the results of Avana library CRISPR-Cas9 genome-scale knockout (prefixed with Achilles) as well as mutation, copy number and gene expression data (prefixed with CCLE) for cancer cell lines as part of the Broad Institute’s Cancer Dependency Map project. We have repackaged our fileset to include all quarterly-updating datasets produced by DepMap.<br>The Avana CRISPR-Cas9 genome-scale knockout data has expanded to include 689 cell lines, the RNAseq data includes 1249 cell lines, and the copy number data includes 1682 cell lines. Please see the README files for details regarding data processing pipeline procedures updates.<br>As our screening efforts continue, we will be releasing additional cancer dependency data on a quarterly basis for unrestricted use. For the latest datasets available, further analyses, and to subscribe to our mailing list visit https://depmap.org.<br>Descriptions of the experimental methods and the CERES algorithm are published in http://dx.doi.org/10.1038/ng.3984. Some cell lines were process using copy number data based on the Sanger Institute whole exome sequencing data (COSMIC: http://cancer.sanger.ac.uk.cell_lines, EGA accession number: EGAD00001001039) reprocessed using CCLE pipelines. A detailed description of the pipelines and tool versions for CCLE expression can be found here: https://github.com/broadinstitute/gtex-pipeline/blob/v9/TOPMed_RNAseq_pipeline.md.<br>## V2 ChangesCCLE_fusions.csv and CCLE_fusions_unfiltered.csv were swapped in v1, they are correct now.
DOI: 10.6084/m9.figshare.1401870.v2
title: Cerebral glioma grading using Bayesian Network

description: Cerebral glioma grading using Bayesian Network
DOI: 10.6084/m9.figshare.19704226.v1
title: Data used.xlsx

description: Bird diversity and abundance, land cover data from vineyard landscapes
DOI: 10.6084/m9.figshare.23537925.v1
title: BFR-T Balance data DOI: 10.6084/m9.figshare.23537925

description: Dataset for a manuscript evaluating the effect of blood-flow restriction exercise on dynamic balance performance using the lower quarter Y-balance test.
DOI: 10.6084/m9.figshare.28246379.v1
title: CUE in a tidal wetland

description: CUE in a tidal wetland
DOI: 10.17632/4h62p9tdfx
title: Data and Program Files for "Measuring Macroeconomic Tail Risk"

description: Data and Program Files for "Measuring Macroeconomic Tail Risk" Roberto Marfè and Julien Pénasse, Journal of Financial Economics.
DOI: 10.17632/6v23nx58xz
title: Data for: SUBJECTIVE EXPERIENCE OF POETRY: LATENT STRUCTURE AND DIFFERENCES BETWEEN EXPERTS AND NON-EXPERTS

description: Dataset from the four studies of subjective experience of poetry, where experts and non-experts read sets of poems and rated them on a number of adjectives.
DOI: 10.25909/27276171.v3
title: Raw Data associated with Microrheology of the Cumulus-Oocyte Matrix using Optical Tweezer

description: data for all figures can be found in different tabs within the file: Raw Data associated with Microrheology of the Cumulus-Oocyte Matrix using Optical Tweezers
DOI: 10.6084/m9.figshare.14960085.v1
title: Thy7_2020-11-11_16-05-00

description: Electrophysiology recording<br>
DOI: 10.6084/m9.figshare.28320026.v1
title: Table S.2

description: <b>Table S.2. </b>Average and standard deviation (SD) of normalized frequencies and undulation of two helical collagen fiber families of WT, Het, and KO vessels over a time course of 1.5–12 mo, N=6 (3 male, 3 female) for each genotype.
DOI: 10.17632/thwpmt3px7
title: Structural Damage Detection Dataset: Dynamic Response of Coupled Substructures

description: This dataset contains dynamic response measurements for Structural Health Monitoring (SHM), focusing on the detection and identification of damage in assembly products. The data is derived from experiments involving two substructures (A and B) that can be dynamically coupled to form an assembly for which the damage is expected to occur in the joints connecting the substructures. The coupling configuration is illustrated in the attached image (Image.jpg). In addition to substructure measurements, the dataset includes measurements from four differently damaged assemblies:

- undamaged assembly,
- assembly with a 5 mm cut at location J_1,
- assembly with a 10 mm cut at location J_1, and
- assembly with a 10 mm cut at location J_2.

Locations J_1 and J_2 are shown in Image.jpg.

The data is stored in the data.h5 file and organized as follows:

- The main group is named 'data'.
 + Within 'data', there are six subgroups:
 * Groups 'A' and 'B' contain measurements for substructures A and B, respectively.
 * Four groups for the differently damaged assemblies ('assembly_undamaged', 'assembly_J1_1_4', 'assembly_J1_1_2', and 'assembly_J2_1_2').

 + Each subgroup contains measurements of impact force (in Newtons) and response in terms of acceleration (in units of standard gravity), organized as follows:

 * Groups are named 'r_e', where the number following 'r' denotes the response degree of freedom ID, and the number following 'e' indicates the excitation force application degree of freedom ID.
 * Each group contains two subgroups, 'response_data' and 'excitation_data', which hold the acceleration and force measurements, respectively.
 * 'response_data' and 'excitation_data' include up to four subgroups named numerically ('1', '2', etc.), representing repeated measurements, allowing for data averaging.

Details regarding the locations and directions of the excitation force application, the locations of the response measurements, and measurement units are stored as attributes of the 'response_data' and 'excitation_data' groups. Both, locations and directions for structures A and B are valid for the coordinate systems, displayed in Image_2.jpg. The coordinate system of the assembly coincides with the coordinate system of the substructure A in its first occurrence (on the left side of the assembly in Image.jpg). Attributes describing the damage state of each assembly group are stored within the respective assembly groups (i.e. groups 'assembly_undamaged', 'assembly_J1_1_4', 'assembly_J1_1_2', and 'assembly_J2_1_2').

Acquisition setup: each acceleration/force measurement was performed within 1s of sampling time with a sampling rate of 51.2 kS/s.

This dataset is valuable for researchers and practitioners in SHM, providing comprehensive data for developing and testing algorithms aimed at detecting structural damage based on the dynamic properties of the structure.
DOI: 10.6084/m9.figshare.19171994.v3
title: Clarinet, Cello, Piano Trio Repertoire Database

description: Early version of a dataset of Clarinet, Cello, Piano Trios started in May 8 of 2021. Originally part of a Google Sheet to help organize repertoire lists for A/Tonal Ensemble (Louisville, KY) but now a standalone document focusing on the Clarinet Trio repertoire exclusively.<br>Standalone document started February 13, 2021 and current-work-in-progress version is hosted at the Google docs link in the References section below. <br>Twitter threads documenting and discussing the process also linked below.
DOI: 10.6084/m9.figshare.20379948.v1
title: Raw data.xlsx

description: Raw data of BETr labeling project
DOI: 10.6084/m9.figshare.5614945.v1
title: Dataset_final_update_161201.dta

description: This dataset includes nascent entrepreneurial activity with opportunity and necessity motivation as well as government expenditures by function and miscellaneous macroeconomic factors as control variables.
DOI: 10.17632/2r87gc5xwt
title: Data for: Real estate data for analysing the price effects of energy efficiency in the English housing stock

description: This dataset contains information on housing transactions and housing characteristics in the United Kingdom. It is based on Land Registry data and the register of Energy Performance Certificates (EPCs). All properties were sold at least twice after August 2008 (when EPCs became mandatory for residential properties in the United Kingdom). Data were manual and directly extracted from the web address of each of the on-line data sources and, after data pre-treatments (e.g. filtering, merging), transformed into comma-separated values (CSV) file format.
DOI: 10.17632/7n3d6696hz
title: Grape Varieties Dataset

description: 
Type of data	Images , Specific subject area: Computer Vision, Pattern Recognition, machine learning, deep learning. This dataset has been collected for eight grape varieties, where leaves of grape seedlings were captured in different regions of Iraq for eight common varieties that are desirable in the local market and for export. Useful information of the parts of the photographed seedling  is provided in the dataset that is typically used to identify grape variety  . Seedlings were photographed during the fruiting season to identify their types with highest confidence. 
Dataset for 8 varieties included  (deas al-annz, kamali, halawani, thompson seedless, aswud balad, riasi, frinsi, shdah) comprises of a total of 8000 image,  1000 images for each grape variety.
The dataset consists of eight folder (corresponding to the included grapes types), each folder contains 1000 images of JPG format. The images within the dataset are all of the resolution of  1620 x 1080 pixels, Thus, the data size is 1.95 GB, After compressing with a zip program, the data size became 1.83 GB. Each folder represents one of the eight grape varieties.
DOI: 10.17632/dz4y3n95xj
title: Experimental data for the manuscript "Characteristics of the initial stage of high peak current negative cloud-to-ground winter flashes"

description: The dataset consists of magnetic field recordings of 193 strong negative cloud-to-ground winter lightning analyzed in the manuscript "Characteristics of the initial stage of high peak current negative cloud-to-ground winter flashes".
DOI: 10.17632/gbvjz2t2pj
title: Causal Associations Between Gut Microbiome and Cardiovascular Disease: A Mendelian Randomization Study

description: This database is a representation of all the data presented in this article. It is mainly used to assist in illustrating the relationship between intestinal microbes and cardiovascular diseases. The relevant text can be found elsewhere.
DOI: 10.17632/pntrh5vs8j
title: A signal-detection-based confidence-similarity model of face-matching

description: Face-matching consists of the ability to decide whether two face-images (or more) belong
to the same person or to different identities. Face-matching is crucial for efficient face
recognition, and plays an important role in applied setting such as passport control and
eyewitness memory. However, despite extensive research, the mechanisms that govern
face-matching performance are still not well understood. Moreover, to-date, many
researchers hold on to the belief that match and mismatch responses are governed by two
separate systems, an assumption that likely thwarted the development of a unified model
of face-matching. The present study proposes a unified unequal variance confidence
similarity signal-detection-based model of face-matching performance, one that facilitates
the use of receiver operating characteristics (ROC) and confidence-accuracy plots
analyses to better understand the relations between match and mismatch responses, and
their relations to factors of confidence and similarity. The model can account for the
presence of both within-identity and between-identity sources of variation in face
recognition, and explains a myriad of face-matching phenomena, including the
match-mismatch dissociation. The model is also capable of generating new predictions
concerning the role of confidence and similarity and their intricate relations with accuracy.
The new model was tested against six alternative competing models (some postulate
discrete rather than continuous representations) in three experiments. Data analyses
consisted of hierarchically-nested model fitting, ROC curve analyses, and
confidence-accuracy plots analyses. All of these provided substantial support in the
signal-detection-based confidence-similarity model. The model suggests that the accuracy
of face-matching performance can be predicted by the degree of similarity/dissimilarity of
the depicted faces and the level of confidence in the decision. Moreover, according to the
model confidence and similarity ratings are strongly correlated.
DOI: 10.17632/y68by8rz8h
title: Dataset for potential application of CPC material synthesized from Rarak extract-copper

description: Copper-phytochemical coordination (CPC) materials synthesize from solvothermal reaction of phytochemicals in Rarak extract and copper ions. The CPC materials is investigated for their potential application including cytotoxicity assay against NIH-3T3 cell line, cytotoxicity assay toward seed germination on Arabidopsis thaliana plant model, and adsorption performance against various hazardous substances (dyes and heavy metals). This dataset contains the experimented value on the cytotoxicity assays and adsorption study of the CPC materials.
DOI: 10.6084/m9.figshare.28468688.v1
title: LSM with transfer learning

description: Data and codes for landslide susceptibility modeling with transfer learning
DOI: 10.6084/m9.figshare.7046600.v1
title: Supplementary Material for: Early Introduction of Egg and the Development of Egg Allergy in Children: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> The timing of the introduction of egg to an infant’s diet is of current interest, as new evidence raises questions regarding the benefit of delaying egg introduction. The objective of this study was to systematically review the existing literature regarding the effect of the early introduction of egg on the development of egg allergy. <b><i>Methods:</i></b> Literature searches were conducted in MEDLINE, EMBASE, and CENTRAL, and trial protocols were searched in Meta Register and OpenGREY. Only randomized controlled trials (RCTs) comparing early (between 3 and 6 months of age) egg introduction to no early introduction were included. The primary outcome was the development of egg allergy. <b><i>Results:</i></b> Of the 416 articles identified and screened, 6 RCTs met the eligibility criteria for data extraction. Allergic outcomes were evaluated in a total of 3,032 participants. A low to moderate level of evidence showed a benefit of the early introduction of egg (relative risk, RR 0.60, 95% CI 0.44–0.82, <i>p</i> = 0.002, mild heterogeneity, <i>I</i><sup>2</sup> = 23%). The absolute risk reduction for a population with an incidence of egg allergy of 9.3% was 37 fewer cases (95% CI 17–52) per 1,000 people. Consumption of &lt; 4,000 mg/week of egg protein had a greater preventive effect than a higher dose. <b><i>Conclusion:</i></b> This systematic review and meta-analysis showed an association between the early introduction of egg and a lower risk of egg allergy. Furthermore, the nature and dose of egg protein exposure may play a role. These findings should be addressed in the context of primary studies.
DOI: 10.17632/8fg5jhp9pc
title: Examining Pedagogical Translanguaging: A Systematic Review of the Literature

description: Corpus of citations used for analysis in the systematic literature review on pedagogical translanguaging.
DOI: 10.17632/hj6vktg6jw
title: Shallow rockburst dataset

description: With a burial depth of 500 m as the delineation, the dataset comprised 69 rock burst cases, spanning hydroelectric power station construction, tunneling, and underground mining.
DOI: 10.6084/m9.figshare.16606694.v1
title: Fruits_set_data

description: Fruit-set ratios in respective access restriction treatments at the study sites at Tottori in 2019, at Central Kumamoto in 2019, at Tochigi in 2019, and at Tochigi in 2020. Access restriction treatments are the following: covering of flower buds with unwoven cloth bag; covering of flower buds with 2 mm bag; covering of flower buds with 3.5 mm bag; open pollination; hand-pollination followed by open pollination.
DOI: 10.6084/m9.figshare.19706680.v2
title: AVSRT-Autism Dataset

description: This dataset consists of .mat files containing reaction times (RTs) measured in 411 participants between the ages of 4 to 50 years with or without a diagnosis of Autism Spectrum Disorder. RTs were measured in response to randomly presented auditory, visual and audiovisual stimuli. Subject informaiton can be found in the accompanying spreadsheet.
DOI: 10.6084/m9.figshare.21587382.v1
title: Survey questions and data

description: The survey questionnaire and answers eliciting farmers responses for two parts, 1) farmers’ socio-economic characteristics and 2) farmers’ perception of CD impacts and sociopsychological questions regarding the maintenance of CDs. <br> The survey was carried out for 492 farmers distributed across 24 villages in the Kamadhiya catchment in the Saurashtra region of Gujarat state of India.
DOI: 10.6084/m9.figshare.25974652.v1
title: Potential geographical distribution of invasive alien plants in China under climate change

description: This dataset presents species occurrence data of 39 invasive alien species that are listed in four batches of invasive alien species by the Chinese government.
DOI: 10.6084/m9.figshare.26793058.v1
title: Supplemental Tables S1-S7

description: Supplemental Data Tables supporting manuscript
DOI: 10.17632/88jp3swkn6
title: Automated classification of gust events in the contiguous USA

description: Supplementary data for "Automated classification of gust events in the contiguous USA". (Including R scripts missing in Version 1)
R scripts are provided to automatically:
1. Download, parse, 1-minute interval wind observations from the NCEI TD6405 and TD6406 databases, and locate/remove errors.
2. Detect and correct/remove artefacts in the observations.
3. Locate all gust events greater than a threshold and separated by a period, and classify into six Classes of meteorological types.
A Rdata file of pre-classified gust events from 450 ASOS stations from 2000-2021 is provided.
DOI: 10.6084/m9.figshare.28896824.v1
title: Climate-Driven Range Shifts of an Endangered Tree Species: A MaxEnt-Based Analysis of <i>Cercidiphyllum japonicum</i> in China

description: The relict tree <i>Cercidiphyllum japonicum</i>, a Tertiary paleoendemic with high ecological and timber value, exhibits strong preferences for warm-cool humid climates and acidic soils. Using MaxEnt and ArcGIS, we modeled its distribution under current and future climates (SSP scenarios). Current high-suitability areas (&gt;0.6 probability) are concentrated in the Sichuan Basin and Yellow-Yangtze transition zones. By 2050, northwestward expansions (14.32–18.76% area increase) and eastward dispersal to Central China are projected under SSP1-2.6 and SSP5-8.5. However, by 2090, habitat losses exceed 22% under SSP5-8.5. Key drivers include minimum coldest-month temperature (bio6, 38.7%), annual precipitation (bio12, 29.1%), and temperature range (bio7, 18.5%), with precipitation seasonality and thermal extremes becoming critical future constraints. Conservation priorities include: (1) protecting refugia in the Daba-Wushan mountains, (2) assisted migration to northwestern high-latitudes, and (3) microclimate preservation. This study provides a framework for evidence-based conservation of paleoendemics under climate change.
DOI: 10.17632/ttvm4cr25s
title: MATLAB Code to Estimate Logit-Mixed Logit Model (Preference space, fixed and random parameters)

description: This is a sample MATLAB code to estimate Logit-Mixed Logit Model in preference space. The example is provided for a model with 2 fixed parameters, 2 random parameters, and 3 alternatives. This code is an extension of the original code by Kenneth Train which considers all utility parameters to be random and the model is estimated in willingness-to-pay space. This code uses a simuated data. data_generation.m generate this data and give test.csv and test_save.mat as outputs. In the attached folder, main_test.m is the main file which takes test.csv and test_save.mat as inputs. The default setting is "no bootstrapping" because it would take some time to run. You can change WantBoot=1 to get the bootstrapped standard errors. You can increase the number of repetitions (NReps) to 50 to get stable standard error estimates. To get the histogram of random coefficient 1, use bar(MidEst(1,:),FreqEst(1,:)). Please cite the following papers if you use this code in any form: Bansal, P., Daziano, R. A., & Achtnicht, M. (2018). Extending the logit-mixed logit model for a combination of random and fixed parameters. Journal of choice modelling, 27, 88-96. Bansal, P., Daziano, R. A., & Achtnicht, M. (2018). Comparison of parametric and semiparametric representations of unobserved preference heterogeneity in logit models. Journal of choice modelling, 27, 97-113.
DOI: 10.6084/m9.figshare.13448717.v1
title: International trade of fish linking exports and imports

description: Trade data used in Nash et al. (in press). <br> International marine fisheries trade data for 2015 from Watson, et al. 2017 Marine Policy. This data links fisheries capture data to seafood exports and imports reported by FAO. Flows of fish in the global seafood trade are traced in tonnes by matching commodity groups to taxa and trading partners for seafood from UN's annual Comtrade data (1988–2015). Where no information on trade was available, WTO's primary trading partner data were used. Trade flows are identified according to importing and exporting country. <br> Data also provided for coefficient of variation of tonnage of fish imported by nations from 1976-2015. <br> Please contact Kirsty Nash (https://orcid.org/0000-0003-0976-3197) with any questions about the dataset.
DOI: 10.6084/m9.figshare.27130419.v1
title: Data of delta SOC and factors summary for submission.xlsx

description: Drylands occupy 41% of Earth's land surface and support more than 38% of human population. To achieve C neutralization, understanding how SOC stocks in drylands response to environmental conditions is important for climate change mitigation and sustainable cropland management. Based on the soil sampling locations recorded by the Second National Soil Survey of China in 1980s, we collected 721 soil samples in the 2010-2013 to investigate the direct and indirect effects of climate, soil properties, and agricultural practices on SOC stocks in drylands across north, northeast, and northwest of China over a span of three decades.
DOI: 10.6084/m9.figshare.4658947.v1
title: Data and analysis scripts

description: This contains data and analysis scripts to process and visualise population-level RNA-seq (from Cembrowski et al., Neuron, 2016; Cembrowski et al., eLife, 2016) and single-cell RNA-seq (from Zeisel et al., Science, 2015). <br>Population-level RNA-seq data is found in the data/ directory, whereas single-cell RNA-seq can be downloaded from the Linnarsson laboratory following the link below.<br>Analysis scripts are found in the code/ directory.
DOI: 10.17632/hpwjndd947
title: Infrared of particles from marine sediment samples collected in Banda Aceh in August 2024 using a Shimadzu Spectrometer at COPS-Thailand, Kyushu University

description: 73 Infrared of particles from marine sediment samples collected in Banda Aceh in August 2024 using a Shimadzu Spectrometer at COPS-Thailand, Kyushu University