cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5123059.v1
title: Supplementary Material for: Glomerular Density-Associated Changes in Clinicopathological Features of Minimal Change Nephrotic Syndrome in Adults

description: <i>Background:</i> Differences in nephron number and/or glomerular size between individuals, in relation to intrauterine growth retardation or low birth weight, have been suggested to affect the clinical course of minimal change nephrotic syndrome (MCNS) in children. However, no previous study has investigated the potential influences of these histological variables on the clinical course of adult patients with MCNS. <i>Methods:</i> The glomerular density (GD; the number of non-sclerotic glomeruli per renal cortical area) and the glomerular volume (GV) were evaluated using renal biopsy specimens from adult patients with a histological diagnosis of MCNS (n = 50). Relationships between these variables and clinicopathological features, including the initial response to corticosteroid therapy, were analyzed. <i>Results:</i> Both the GD (1.5–6.5/mm<sup>2</sup>) and the GV (1.2–4.4 × 10<sup>6</sup> µm<sup>3</sup>) showed about 4-fold variations, and a close inverse correlation was observed between these two variables. Notably, the MCNS patients with a low GD showed a trend towards having similar clinicopathological characteristics as patients with a histological diagnosis of focal segmental glomerular sclerosis, as compared to the MCNS patients with a high GD. In addition, during the initial treatment with corticosteroids, the number of patients achieving complete remission was significantly lower in the MCNS patients with a low GD than that in the MCNS patients with a high GD. <i>Conclusion:</i> These results suggest that the GD in renal biopsies may be an important determinant of the glomerular size variability, and can therefore influence the clinical phenotype, such as the response to corticosteroid therapy, in adult patients with MCNS.
DOI: 10.6084/m9.figshare.8248937.v1
title: Supplemental Table S2.

description: Supplemental Table S2. Urine Ba levels in patients who did or did not receive cardiopulmonary bypass during surgery.
DOI: 10.17632/9g667w8btw
title: Data for: Comparison of photothermal radiometry and modulated luminescence, intraoral radiography and cone beam computed tomography for detection of natural caries under restorations.

description: Radiographs though valuable in the detection of advanced caries lesions, are less sensitive for early or recurrent lesions under restorations. The canary system based on the photothermal radiometry and modulated luminescence which involves non-ionizing radiation can serve as a sensitive adjunct in early caries detection.
DOI: 10.17632/h6y2md2fsk
title: Supplementary Data: Efficient VR-AR Communication Method using Virtual Replicas in XR Remote Collaboration

description: When using Virtual Reality (VR) and Augmented Reality (AR) to support remote collaboration, effective communication between a remote expert in VR and a local worker in AR is important for guiding and following task instructions. This is especially crucial for assembly tasks, which require precise identification of parts and clear directions for their combination. Despite the increasing interest in efficient VR-AR communication methods, previous studies have been limited to complex hardware setups and simplified assembly tasks. In this research, we introduce a communication approach for remote collaboration in complex assembly tasks, utilizing simplified hardware configurations. We conducted a user study (n=30) and compared three interaction interfaces (hand gestures, 3D drawing, and virtual replicas) in task completion time, subjective questionnaires, and preference rank. The results showed that the use of virtual replicas not only enhances task efficiency but also receives strong preference by users. These findings indicate that virtual replicas can provide intuitive instructions to local workers, resulting in a clearer understanding of the expert's guidance.
DOI: 10.17632/jgkh2jxbwt
title: Orange Leaves Images Dataset for the Detection of Huanglongbing

description: VALUE OF THE DATA
The data presented here are derived from orange leaves showing symptoms of Huanglongbing (HLB) disease and healthy leaves. These leaves were collected from Mexico's third most important orange-producing region [1], which is particularly susceptible to disease dissemination.
• The dataset can be used by researchers aiming to develop machine learning models to detect and differentiate orange trees affected by HLB disease in their early stages. 
• This dataset enhances the collection of data gathered by other authors and proposes a reasonable balanced number of images for each class. 
• The images were captured using various smartphone cameras, which introduces variability and demonstrates that the models developed with this dataset are not reliant on a specific smartphone camera.

DATA DESCRIPTION
The dataset includes 649 orange leaves, which can be classified into two categories: HLB and Control. The first category (HLB) includes leaves images with symptoms of HLB. This category contains 270 images. 
The second category (Control) comprises 379 images of leaves without symptoms of HLB from healthy trees. These images serve as a control group for the dataset. 
The dataset is presented in two formats: 1) Raw data with a white background and 2) processed data using image standardization to minimize the influence of the background and ensure a consistent frame of reference for comparison.
DOI: 10.17632/jxnfmkkpj3
title: Topographic Number Dataset

description: 1) Total Number of Original Images: 1322
2) Resolution of image: 28x28
3) Image type: Gray scale image
4) Image data type: unsigned integer 8-bit
 5) Dataset Size (Augmented): 26440
6) File format: PNG file
DOI: 10.17632/r53fjrcwt3
title: Online asking and actual house price set - Region of Madrid

description: This dataset contains annual asking and actual prices for rentals in the Region of Madrid (Spain) for 2015 to 2019. Data is aggregated by administrative neighborhood in the capital city, and at the municipal level for the rest of the region. There are also some derived data sets, such as average household income, and asking to actual price coefficients.
DOI: 10.17632/shvph7b6t3
title: Interventions for molluscum contagiosum: a systematic review and network meta-analysis with normalized entropy assessment 

description: Supplementary tables and figures
DOI: 10.6084/m9.figshare.24782601.v3
title: S2_Table: SensorReliabilityTest

description: This spreadsheets has three tabs. The description for the data each tab is below. Phase One: In 20 L of distilled water, Nutrient A was added to distilled water in 1 mL doses up to 25 mL. Next Nutrient B was added in 1 mL doses up to 50 mL. Phase Two: In 20 L of distilled water, Nutrient B was added to distilled water in 1 mL doses up to 25 mL. Next Nutrient A was added in 1 mL doses up to 50 mL. This is coded in the Nutrient column. Nutrient A = 1, Nutrient B = 2.Phase Three: Into 40 L of distilled water, 2 mL of nutrient A and 2 mL of nutrient B are added separate but simultaneously until an total of 200 mL of nutrient has been added.
DOI: 10.6084/m9.figshare.29036840.v3
title: Processed pickled data for best model (script number 4)

description: Raw labelled data used for analysis
DOI: 10.17632/h7fvhycmmn
title: Breast cancer-related VOCs

description: This dataset was collected to evaluate the diagnostic performance of breath-omics to differentiate between benign and malignant breast lesions and assess the diagnostic performance of a multi-omics approach combining breath-omics, ultrasound radiomics, and clinic-omics via a nested cohort study. This dataset includes three parts data all finally enroll 238 participants: 1) breath-omics data: the mass spectrum of participants breath samples on high-pressure photon ionization time-of-flight mass spectrometry (HPPI-TOF-MS); 2) basic clinic data: the basic clinical characteristics of all enrolled participant; 3) ultrasound radiomics data: the radiomics features calculated based the delineated lesion via Pyradiomics package.
DOI: 10.17632/njhc957dfj
title: Data for: Neurological Complications of COVID-19 Predict Worse Outcomes During Hospitalization

description: Full, Clean data cleared by IRB and completely de-identified.
DOI: 10.17632/t2fb23prhn
title: Replication Code for Central Bank Driven Mispricing
DOI: 10.6084/m9.figshare.11300384.v1
title: MOESM6 of Transcriptional profiling of long noncoding RNAs associated with leaf-color mutation in Ginkgo biloba L

description: Additional file 6: Data S4. Differentially expressed mRNAs.
DOI: 10.6084/m9.figshare.17158415.v1
title: Data used to produce the figures

description: Data used to produce resp. figures of the article
DOI: 10.6084/m9.figshare.19351982.v1
title: Oxygen Saturation in Body.csv

description: 1. Lebel "1" = Low Oxygen (affect brain)<br>2. Lebel "2" = Low Oxygen Level<br>3. Lebel "3" = Concering Oxygen Level <br>4. Lebel "4" = Normal Oxygen Level
DOI: 10.6084/m9.figshare.22216921.v1
title: output_data.zip

description: Generated data from DeepABM-COVID model for global sensitivity analysis (GSA) framework using polynomial chaos expansion (PCE) on the Grassmann manifold.
DOI: 10.6084/m9.figshare.25680999.v1
title: 18S

description: This items contains the raw OTU table, from 18S sequences, used to analyze the protist and invertebrate communities associated with the Crop Wild Progenitors (CWP) of nine of the most important crop species. The project involves a global sampling of rhizosphere and bulk soil of CWPs along environmental gradients (i.e. covering a wide range of conditions).DB_BS-RS.xlsx file within the Metadata item contains all the necessary information regarding files and the associated metadata.
DOI: 10.60893/figshare.jcp.27922293.v1
title: Supplemental Material 2

description: Supplemental Cartesian Coordinates
DOI: 10.17632/2f2yr482v8
title: Legume cover crops sequester more soil organic carbon than non-legume cover crops by stimulating microbial transformations

description: Raw data for the manuscript "Legume cover crops sequester more soil organic carbon than non-legume cover crops by stimulating microbial transformations " by Hu et al.
DOI: 10.17632/5pc2j46cbc
title: Epileptic EEG Dataset

description: Abstract: This dataset includes the EEG of 6 epileptic patients recorded at the Epilepsy monitoring unit of the American university of Beirut Medical Center between January 2014 and July 2015. The data represents measurements from 21 scalp electrodes, following the 10-20 electrode system, sampled at 500 Hz . All channels have been bandpass filtered between 1/1.6 Hz and 70Hz while filtering out the 50Hz (electrical utility frequency). Some channels have been omitted from specific recordings due to artifact constraints. This work was made possible by NPRP grant # NPRP12S-0305-190231 from the Qatar National Research Fund (a member of Qatar Foundation). The findings achieved herein are solely the responsibility of the authors.
DOI: 10.17632/brpk4g28zn
title: SudoDEM: Unleashing the predictive power of the discrete element method on simulation for non-spherical granular particles

description: This paper presents a novel open-source discrete element code, SudoDEM, for efficient modeling of both 2D and 3D non-spherical particles under a GPL v3 or later license. Built upon a popular open-source code YADE, our code inherits the core of a classic DEM framework empowered by OpenMP acceleration, and further offers unique features of a rich library of prime particle shapes, including poly-superellipsoids, superellipsoids, cylinders, cones, polyhedrons for 3D and disks and superellipses for 2D. Unlimited choices of more complex particle shapes can be readily generated by clumping these prime shapes. Efficient modeling of complex shaped particles hinges on contact detection. In SudoDEM, we have developed three generic and efficient contact detection algorithms, the parametric common normal (PCN) algorithm, the Gilbert–Johnson–Keerthi (GJK) algorithm, and the hybrid PCN–GJK algorithm, to handle contacts among complex-shaped particles during a typical DEM simulation. The new DEM code is validated and further showcased by multiple examples, including granular packing, triaxial compression, and landslide, its robustness, efficiency and versatility in providing realistic solutions to granular mechanics problems. The project is hosted at an open-source page at https://sudodem.github.io, while the source codes are freely available at a GitHub repository (https://github.com/SudoDEM). We foresee a great capability and potential for SudoDEM in advancing future progress in granular physics and granular mechanics and in fostering advanced simulations of critical engineering and industrial processes pertaining to granular media.
DOI: 10.17632/m256t3pv3r
title: Data for: The branching ratio of intercombination $A^1\Sigma^+\sim b^3\Pi\to a^3\Sigma^+/X^1\Sigma^+$ transitions in the RbCs molecule: measurements and calculations

description: The spin-allowed A1Sigma+-X1Sigma+ and b3Pi-a3Sigma+ TDM functions of the RbCs molecule obtained by the scalar-relativistic CI-CPP calculations. The fully relativistic (2,3)0+ - (1)0+ curves are the original TDM functions obtained using FSRCC-FF method in the framework of the conventional adiabatic representation. And their quasi-diabatic A0+ - X0+, b0+ - a1, b1 - a0- TDM functions derived from the relativistic FSRCC-FF data.
DOI: 10.17632/my8zrstv95
title: Effect of different seed priming techniques on germination and seedling vigor of summer maize in Chitwan, Nepal.

description: Summer maize is a popular grain crop however, its yield is lower in Nepal due to water stress, drought, and other unfavorable environmental conditions. In such cases, priming can be done to improve its germination and crop establishment. Germination and seedling vigor tests were done in the field and lab conditions using six treatments including priming by water, 1% KNO3, 1% common salt, 50 ppm GA3, 10g/kg Trichoderma and control in RCBD with 3 replications. Observations were taken up to 20 days from sowing on alternate days. Among all the treatments hormopriming shows the most desirable results for the studied parameters. It gives the best results with increased germination percent, germination index with lower mean and median germination time, and higher vigor index I and vigor index II in both field and lab conditions. The result indicates the need for seed priming in summer maize for better germination, early seedling establishment, and higher seedling vigor.
DOI: 10.17632/ztvtkb63fd
title: Micro-Mechanical Tensile and Shear Tests on Tissue Slices of Norway Spruce

description: This dataset presents experimental results from tensile (UTS) and shear (USS) tests performed on tissue slices of Norway Spruce, tested across different anatomical orientations - longitudinal (L), radial (R), and tangential (T) - and at varying relative humidity (RH) levels of 30%, 65%, and 90%. The tissue samples were sliced in all orientations: {LR, RL, RT, TR, LT, TL}, where the first letter indicates the longest dimension and the second represents the width. {LR,RL,RT,TR} are characterized by alternating bands of earlywood (EW) and latewood (LW). For {LT,TL}, different tissues were isolated for EW and LW: {LT-EW, LT-LW, TL-EW, TL-LW}.

The dataset is organized by sample and test type, with each file containing multiple sheets - one for each sample. Each sheet provides detailed information about the sample, including its dimensions, RH during testing, failure stress (maximum recorded stress), and elastic modulus (Young’s or shear modulus). The modulus is calculated from a linear fit of the stress-strain curve between approximately 10% to 60% of the strain corresponding to the ultimate strength, and the start and end indexes used for this calculation are provided in each sheet. Additionally, each sheet contains recorded time, elongation, and force, along with strain and stress values calculated from these measurements and the sample dimensions.

A. Ferrara and F.K. Wittel (2024), "Micro-mechanical tests on tissue slices of Norway spruce: tensile and shear performance"
DOI: 10.6084/m9.figshare.14380982.v1
title: SRR5836473.coverage.bigWig

description: SRA data for mouse model processed dataset. BigWig format.
DOI: 10.6084/m9.figshare.16552548
title: Supplementary Material for: Benign Cardiac Neoplasms in the United States - a Thirteen-Year Review.

description: Medicine
DOI: 10.6084/m9.figshare.28379207.v1
title: Wide-size SEM images of a <i>Promethearchaeota</i> strain

description: SEM images and segmentation images taken to compare the size/numbers of HC1 cells, protrusions, and membrane vesicles when cultured with yeast extract concentrations of 0.005% and 0.05%. Data set obtained from segmentation images.
DOI: 10.6084/m9.figshare.28645418.v1
title: Raw fastq file of Oxford Nanopore sequencing of whole genomic DNA of citrus red mite (<i>Panonychus citri</i>)

description: High molecular weight (HMW) DNA was extracted using salt method from about 300 pooled individuals with mixed sex and different development stages. These individuals were firstly transferred into 1.5 ml microtube. We then added 400 μL lysis buffer from the MagAttract HMW DNA Kit (Qiagen, 67563) and 40 μL of 10 μg/mL proteinase K to lysis these individuals. The mixture was incubated overnight (~18h) at 56°C. Then 50 μL of 5 M NaCl was added into the lysed, the mixture was centrifuged at 5000 ×g at 4°C for 15 min. The supernatant was transferred into a new microtube with 400 μL of 100% EtOH and 5 μL of glycogen (20 mg/mL) and cooled at −80°C for 20 min. After centrifuging at 6250 ×g, 4°C for 5 min, the supernatant was removed. The pellet was washed with 1 mL of cold 70% ethanol, centrifuged, and air dried 5 min. Finally, the DNA was resuspended in molecular biology grade H<sub>2</sub>O. DNA quantitation was used Qubit 3 Fluorometer (Thermo Fisher Scientific, Q32850). Agilent 4200 TapeStation (Agilent, 5067–5365) was used for quality-controlled. The high molecular DNA was used to constructed Oxford Nanopore sequencing library following the manufacturer's instructions (Oxford Nanopore Technology). The constructed DNA library was then sequenced on MINION platform. Guppy (version 6.5.7) was employed to perform base calling with model "dna_r10.4_e8.1_hac".
DOI: 10.6084/m9.figshare.28944083.v1
title: Donald Piano Scordatura 17EDO and 18EDO Raw Pitch Data Table.csv

description: Comparative Raw Data of Resonant Threshold limits of detuned piano strings across the whole piano keyboard. 17EDO and 18EDO chromatic scales have been calculated within the data table. This data accompanies both a research paper entitled "Charting Reliable Access to Chromatic Microtonal Scales with Greater Than Twelve Notes per Octave on Upright Standard-Strung Pianos: A Quantitative Investigation into the Limits of Detuned Piano Scordatura", and a demonstrative video on figshare:Donald, Angus (2023). Angus Donald Scordatura Piano Capstone accompanying video.mov. figshare. Media. https://doi.org/10.6084/m9.figshare.24463378.v1
DOI: 10.6084/m9.figshare.3554742.v1
title: Appendix B. An unbiased estimator for the expected sample coverage in coverage-based rarefaction.

description: An unbiased estimator for the expected sample coverage in coverage-based rarefaction.
DOI: 10.17632/vh6v77ydw5
title: ANÁLISIS DE LA ESTRATEGIA DE COMUNICACIÓN USADA POR EL AMÉRICA DE CALI DURANTE LA PANDEMIA EN EL 2020

description: Trabajo de grado para la obtención del título como comunicador social
DOI: 10.6084/m9.figshare.19467611.v2
title: Fig. 3_pH 3 and 7.2.xlsx

description: Viable plate count of W. coagulans strain LMG S-31876 at pH 3.0 and pH 7.2. The results are expressed as mean ± standard deviation of log10 CFU/mL.
DOI: 10.6084/m9.figshare.22815770.v10
title: Classification and Challenges of Non-Functional Requirements in ML-Enabled Systems: A Systematic Literature Review

description: <pre><b>Context:</b> Machine learning (ML) is nowadays so pervasive and diffused that virtually no application can avoid its use. Nonetheless, its enormous potential is often tempered by the need to manage non-functional requirements (NFRs) and navigate pressing, contrasting trade-offs.<br><b>Objective:</b> In this respect, we notice a lack of systematic synthesis of challenges explicitly tied to achieving and managing NFRs in ML-enabled systems. Such a synthesis may not only provide a comprehensive summary of the state of the art but also drive further research on the analysis, management, and optimization of NFRs of ML-enabled systems.<br><b>Method:</b> In this paper, we propose a systematic literature review targeting two key aspects such as (1) the classification of the NFRs investigated so far, and (2) the challenges associated with achieving and managing NFRs in ML-enabled systems during model development<br>Through the combination of well-established guidelines for conducting systematic literature reviews and additional search criteria, we survey a total amount of 130 research articles.<br><b>Results:</b> Our findings report that current research identified 31 different NFRs, which can be grouped into six main classes.<br>We also compiled a catalog of 26 software engineering challenges, emphasizing the need for further research to systematically address, prioritize, and balance NFRs in ML-enabled systems.<br><b>Conclusion:</b> We conclude our work by distilling implications and a future outlook on the topic.</pre>
DOI: 10.6084/m9.figshare.28736597.v1
title: <b>Elsafty_Reports_of_Myeloid_Neoplasms_2025</b>

description: The aim of the collected dataset (Elsafty_Reports_of_Myeloid_Neoplasms_2025) is to provide specialized, world-class, and comprehensive templates for myeloid neoplasms that serve purposes in Hematopathology practice, teaching/training/examination, and automation, including verification and validation of relevant automated systems. This validated, up-to-date, 100% accurate, machine-readable, and novel/unprecedented dataset has been meticulously reviewed word-by-word by both Hematopathologists and attending physicians from various specialties who detect or diagnose such cases at multiple international medical centres. Such meticulous review, referencing the WHO 5th edition, the international consensus classification of myeloid neoplasms and acute leukemias, along with other relevant esteemed publications, justifies the complexity and diversity of the dataset while maintaining benchmark scientific quality.<br><br>The online web-based software developed for the automated generation of CBC and PBS review narrative interpretation, as well as for complete personalized Hematopathology CPC (<b><i>https://cbctst.com</i></b>), demonstrates the utility of this dataset in supporting the validation of such clinical-fit tools, which are requested to assist senior Hematopathologists by saving time and effort, addressing workforce shortages and stress, and minimizing liability and clerical errors.
DOI: 10.6084/m9.figshare.3514232.v1
title: Appendix C. Estimated changes in habitat availability for each specie under revegetation schedules derived from Zonation cell ranks.

description: Estimated changes in habitat availability for each specie under revegetation schedules derived from Zonation cell ranks.
DOI: 10.6084/m9.figshare.3522374.v1
title: Appendix A. Individual tree data for seed production and seedling recruitment from 1987-1997.

description: Individual tree data for seed production and seedling recruitment from 1987-1997.
DOI: 10.6084/m9.figshare.5002148.v1
title: Sites for sea shore reconstruction.xlsx

description: Sites within two areas from east central Sweden that make up ground data for ancient sea shores. Each site has a position and an altitude and from analysis of lake sediments, or alternatively archaeological finds, 14C-datings are taken. Sites are closely connected to sea shore either by its type (archaeology) or by its diatom content showing the transition from fresh water to marine environment.