cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5pk07d1b
title: MassIVE MSV000095777 - Glycolipidomics of liver flukes and host tissues during fascioliasis _ insights from mass spectrometry imaging
title: Raw files in the xmZML format for the publication "Glycolipidomics of liver flukes and host tissues during fascioliasis _ insights from mass spectrometry imaging". The files for the RP-LC MS/MS experiments and nano-HILIC MS/MS experiments are provided.
DOI: 10.15468/dl.p9hnvu
title: Occurrence Download

description: A dataset containing 891 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.359743040685231 37.356932548179884,-4.359743040685231 37.356932548179884,-4.359743040685231 41.356932548179884,-8.359743040685231 41.356932548179884,-8.359743040685231 37.356932548179884))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Salvia verbenaca L."
 ]
}

 The dataset includes 891 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117232-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bdxwjw
title: Occurrence Download

description: A dataset containing 30865476 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coleoptera"
 ]
}

 The dataset includes 30865476 records from 10702 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117220-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19312054
title: Progs-PRSA.rar from Lagrangian fibrations in coupled resonant oscillators in the paired case of four degrees of freedom containing swinging spring oscillator

description: All programs, codes, tests and results
DOI: 10.6084/m9.figshare.19312054.v2
title: Progs-PRSA.rar from Lagrangian fibrations in coupled resonant oscillators in the paired case of four degrees of freedom containing swinging spring oscillator

description: All programs, codes, tests and results
DOI: 10.6084/m9.figshare.19312054.v1
title: Progs-PRSA.rar from Lagrangian fibrations in coupled resonant oscillators in the paired case of four degrees of freedom containing swinging spring oscillator

description: All programs, codes, tests and results
DOI: 10.25345/c58w3856j
title: MassIVE MSV000089060 - MAM Nature Protocol 2022-Investigational chimeric IgG1mAb biosimilar
title: Peptide mapping experiment on a chimeric IgG1 mAb investigational biosimilar. Three replicates are provided as 1, 2 and 3.
DOI: 10.5281/zenodo.5889602
title: Carbene-Catalyzed Enantioselective Sulfonylation of Enone Aryl Al-dehydes: New Mode of Breslow Intermediate Oxidation

description: This folder /final_xyz_structures/ contains the geometries (in .xyz format together with the gas-phase energy, E) accompanying the paper "Carbene-Catalyzed Enantioselective Sulfonylation of Enone Aryl Aldehydes: New Mode of Breslow Intermediate Oxidation and Remote Catalytic Control" Where conformers occur, they are always named from the lowest Gibbs energy to the highest in ascending order from c1 (sometimes omitted), c2, c3, ...
DOI: 10.5281/zenodo.4679304
title: Carbene-Catalyzed Enantioselective Sulfonylation of Enone Aryl Al-dehydes: New Mode of Breslow Intermediate Oxidation

description: This folder /final_xyz_structures/ contains the geometries (in .xyz format together with the gas-phase energy, E) accompanying the paper "Carbene-Catalyzed Enantioselective Sulfonylation of Enone Aryl Aldehydes: New Mode of Breslow Intermediate Oxidation and Remote Catalytic Control" Where conformers occur, they are always named from the lowest Gibbs energy to the highest in ascending order from c1 (sometimes omitted), c2, c3, ...
DOI: 10.5281/zenodo.6355618
title: Supplementary files - Evaluation of MALDI-TOF MS technology in small ruminant milk adulteration using raw bovine milk

description: The dataset is a part of Supplementary file for the manuscript: <strong>Evaluation of MALDI-TOF MS technology in small ruminant milk adulteration using raw bovine milk</strong> by L. Rysova, P. Cejnar, O. Hanus, V. Legarova, J. Havlik, H. Nejeschlebova, I. Nemeckova, R. Jedelska, M. Bozik, submitted to <em>Journal of Dairy Science</em> (Manuscript ID JDS.2021-21396), Received October 8, 2021, Accepted January 31, 2022, Corresponding author: bozik@af.czu.cz, https://doi.org/10.3168/jds.2021-21396 <strong>File 1:</strong> Detailed MALDI-TOF method description <strong>File 2: </strong>Quantification of milk adulteration – calibration of the model Quantification of milk adulteration – calibration of the model <strong>Table S1: </strong>Baseline characteristics of pure bovine milk which was used as an adulterant of caprine milk<strong> </strong> <strong>Table S2: </strong>Baseline characteristics of pure bovine milk which was used as an adulterant of ovine milk <strong>Table S3: </strong>Root mean squared error (RMSE) of predicted caprine and ovine adulterated milk samples using set A as the training set and set B as the test set. <strong>Table S4: </strong>Root mean squared error (RMSE) of predicted caprine and ovine adulterated milk samples using both, set A and set B , as the one training set and set C as the test set. <strong>Table S5: </strong>Root mean squared error (RMSE) of predicted caprine and ovine adulterated milk samples using set AB as the training set and set C as the test set. In this version <strong>SD values in Table S2 were corrected</strong>.
description: The authors thank the Ministry of Agriculture of the Czech Republic (grant NAZV QK1920222 in the program ZEMĚ) for the financial support and METROFOOD-CZ research infrastructure (Prague,Czech Republic; MEYS Grant No: LM2018100) for access to its facilities. P. C. acknowledges support by the Ministry of Education, Youth and Sports of the Czech Republic (Prague, Czech Republic; grant LTAIN19007 Development of Advanced Computational Algorithms for Evaluating Post-surgery Rehabilitation) for data analysis.
DOI: 10.5281/zenodo.6351584
title: Supplementary files - Evaluation of MALDI-TOF MS technology in small ruminant milk adulteration using raw bovine milk

description: The dataset is a part of Supplementary file for the manuscript: <strong>Evaluation of MALDI-TOF MS technology in small ruminant milk adulteration using raw bovine milk</strong> by L. Rysova, P. Cejnar, O. Hanus, V. Legarova, J. Havlik, H. Nejeschlebova, I. Nemeckova, R. Jedelska, M. Bozik, submitted to <em>Journal of Dairy Science</em> (Manuscript ID JDS.2021-21396), Received October 8, 2021, Accepted January 31, 2022, Corresponding author: bozik@af.czu.cz, https://doi.org/10.3168/jds.2021-21396 <strong>File 1:</strong> Detailed MALDI-TOF method description <strong>File 2: </strong>Quantification of milk adulteration – calibration of the model Quantification of milk adulteration – calibration of the model <strong>Table S1: </strong>Baseline characteristics of pure bovine milk which was used as an adulterant of caprine milk<strong> </strong> <strong>Table S2: </strong>Baseline characteristics of pure bovine milk which was used as an adulterant of ovine milk <strong>Table S3: </strong>Root mean squared error (RMSE) of predicted caprine and ovine adulterated milk samples using set A as the training set and set B as the test set. <strong>Table S4: </strong>Root mean squared error (RMSE) of predicted caprine and ovine adulterated milk samples using both, set A and set B , as the one training set and set C as the test set. <strong>Table S5: </strong>Root mean squared error (RMSE) of predicted caprine and ovine adulterated milk samples using set AB as the training set and set C as the test set. In this version <strong>SD values in Table S2 were corrected</strong>.
description: The authors thank the Ministry of Agriculture of the Czech Republic (grant NAZV QK1920222 in the program ZEMĚ) for the financial support and METROFOOD-CZ research infrastructure (Prague,Czech Republic; MEYS Grant No: LM2018100) for access to its facilities. P. C. acknowledges support by the Ministry of Education, Youth and Sports of the Czech Republic (Prague, Czech Republic; grant LTAIN19007 Development of Advanced Computational Algorithms for Evaluating Post-surgery Rehabilitation) for data analysis.
DOI: 10.5281/zenodo.6341687
title: Data for "Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection"

description: Once decompressed, the file contains a folder which contains: The files "s100_Nth.fasta" (where "N" is 5, 6, 7 or 8), which are the output of the SELEX experiment described in the paper with DOI: 10.1002/cbic.201900265. They are standard fasta files, and the descriptor of each sequence is of the form "seqX-Y", where "X" is an increasing label, and "Y" is the number of times "seqX" has been obtained (number of counts of "seqX"). The file "Aptamer_Exp_Results.csv", which contains the sequences tested experimentally for the paper "Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection" (preprint available at https://doi.org/10.1101/2022.03.12.484094), with the following experimental results for each sequence: (i) whether the sequence was able to bind thrombin ('B' for binders, 'NB' for non-binders); (ii) the thrombin exosite used for binding ('I' for exosite I, 'II' for exosite II, 'n/a' for sequences not tested). Examples of usage of the data are available at https://github.com/adigioacchino/RBMsForAptamers.
description: If these data are used for academic research, please consider citing the following papers: https://doi.org/10.1101/2022.03.12.484094; https://doi.org/10.1002/cbic.201900265.
DOI: 10.5281/zenodo.6341686
title: Data for "Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection"

description: Once decompressed, the file contains a folder which contains: The files "s100_Nth.fasta" (where "N" is 5, 6, 7 or 8), which are the output of the SELEX experiment described in the paper with DOI: 10.1002/cbic.201900265. They are standard fasta files, and the descriptor of each sequence is of the form "seqX-Y", where "X" is an increasing label, and "Y" is the number of times "seqX" has been obtained (number of counts of "seqX"). The file "Aptamer_Exp_Results.csv", which contains the sequences tested experimentally for the paper "Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection" (preprint available at https://doi.org/10.1101/2022.03.12.484094), with the following experimental results for each sequence: (i) whether the sequence was able to bind thrombin ('B' for binders, 'NB' for non-binders); (ii) the thrombin exosite used for binding ('I' for exosite I, 'II' for exosite II, 'n/a' for sequences not tested). Examples of usage of the data are available at https://github.com/adigioacchino/RBMsForAptamers.
description: If these data are used for academic research, please consider citing the following papers: https://doi.org/10.1101/2022.03.12.484094; https://doi.org/10.1002/cbic.201900265.
DOI: 10.6084/m9.figshare.19361213
title: Supplementary Material for: Effects of Exergaming on Physical and Cognitive Outcomes of Older Adults Living in Long-Term Care Homes: A Systematic Review

description: <b><i>Background:</i></b> Aging is often associated with increasing functional decline as measured by deterioration in mobility and activities of daily living. Older adults (OAs) living in residential long-term care (LTC) homes in particular may not engage in regular physical exercise, significantly increasing their risk of further cognitive and functional decline. Exergaming may hold promise for OAs by combining exercise and technology-based gaming systems, but evidence for its use in LTC is unknown. <b><i>Methods:</i></b> A systematic review was conducted to summarize the effects of exergaming interventions on physical, cognitive, and quality of life (QoL) outcomes for OAs (&gt;65 years of age) living in LTC. <b><i>Results:</i></b> Twenty-one studies involving 657 OAs living in LTC met the inclusion criteria. Most studies were associated with a high risk of bias and many used uncontrolled designs and small samples. Across studies, exergame interventions were associated with preliminary benefits relative to control conditions on standardized measures of physical outcomes (e.g., Timed Up & Go, 5-meter gait speed). No consistent effects were found for cognitive and QoL outcomes. <b><i>Conclusions:</i></b> Exergames might be a promising intervention to benefit the physical health of OAs (&gt;65 years) living in LTC, but more research is required to determine the effects of exergaming on physical health, as well as cognitive and QoL outcomes. More specifically, larger and more methodologically robust evaluations are needed.
DOI: 10.6084/m9.figshare.19174637
title: Supplementary Material for: In vitro effect of occlusal loading on cervical wall lesion development in a Class II composite restoration.

description: Aim: determine the effect of simulated occlusal loading on wall lesion development in cervical gaps of Class-II composite restorations in vitro. 64 extracted human molars received standardized (4.0x4.2x3.0 mm) box preparations. The teeth were randomly assigned to one of two restoration groups: restoration with a normal or a low E-modulus composite material (Clearfil AP-X: E-modulus 16.8 GPa; or Clearfil Majesty ES Flow: E-modulus 6.6 GPa). A metal matrix was placed at the bottom of the box for each restoration, creating a cervical gap of about 100 µm wide. Samples were exposed to simulated caries lesion development in a lactic acid solution (pH 4.8) for 8 weeks in a Rub&Roll device. Half of the samples were subjected to 90N cyclic loading. After demineralisation, the teeth were sectioned. Wall lesion development was measured using microradiography (T-WIM) in two different locations (Location 1: 1000 µm and Location 2: 1600 µm from the gap entrance) and recorded in lesion depth (µm) and mineral loss (µm*vol%). Linear regression modelling was used to estimate the effect of loading and material on wall lesion development. Mean wall lesion depth in location 1 across all groups was 150.83 µm with an SD of 61.83 µm. In location 2, mean overall wall lesion depth was 102.98 µm with an SD of 64.92 µm. Linear regression showed no significant effect of either loading or material on wall lesion development. Occlusal loading had no significant effect on secondary caries lesion development in composite class II restoration in this in vitro study.
DOI: 10.15129/75002e1c-80dc-42ab-984a-3444fbef9c03
title: Data for: "Direct image feature extraction and multivariate analysis for crystallisation process characterisation"

description: This is a collection of data and methodologies used in the following publication: Direct Image Feature Extraction and Multivariate Analysis for Crystallization Process Characterization Authors: Frederik J. S. Doerr, Cameron J. Brown, and Alastair J. Florence Journal: Crystal Growth and Design Acceptance Date: 01-Mar-2022 The dataset includes Crystalline instrument datafiles (MDB_File) and Crystalline image analysis datafiles (MDB_Img) from small scale crystallisation experiments.
DOI: 10.48370/ofd/w3eo25/9v0ore
title: m-0390.tif

description: :unav
DOI: 10.48370/ofd/w3eo25/vursb2
title: 390.S3Dm

description: :unav
DOI: 10.48370/ofd/w3eo25
title: Czyreń rdzawy (Fuscoporia ferruginosa (Schrad ex J.F. Gmelin) Murill [syn. Phellinus ferrugineofuscus (P. Karst) Boourdot]), 390

description: Grzyby makromycetes
DOI: 10.25502/bc9c-e444/d
title: 2018_1401_EE2_DLA visual data

description: Enhanced breeding for increased productivity and improved quality in West Africa
DOI: 10.6084/m9.figshare.19085864
title: Supplementary Material for: Evaluation of the Effect of Axillary Radiotherapy Dose and the Development of Lymphedema in Breast Cancer Patients

description: Purpose: The present study is aiming to correlate between different radiotherapy techniques, fractionations and doses received by each axillary LN level and axillary vessels with the development of breast cancer related lymphedema (BCRL). Methods and materials: We retrospectively studied 181 female breast cancer patients who were diagnosed and treated by radiation therapy during the period from January 2012- December 2017. The radiotherapy treatment plans were recalled from the archives. The axillary LN levels I, II, III, supraclavicular LN were contoured as well as axillary vessels. New dose volume histograms (DVHs) were generated to correlate between the radiotherapy dose t and the development of BCRL. Results: The study included 162 patients treated with 3D radiotherapy technique and 19 treated with 2D technique radiotherapy. 124 patients underwent MRM while 57 patients underwent BCS. 117 patients treated with hypofractionated technique while 64 patients treated with conventional radiotherapy technique . The cumulative incidence of BCRL after radiotherapy was 20.4%. There was a statistically significant relation between 2D radiotherapy technique compared with 3DCRT and development of lymphedema 55% vs 16.6% respectively(p&lt;0.001). Patients who were treated with conventional radiotherapy had significantly higher rates of lymphedema (42.2%) compared with hypofractionated radiotherapy (8.5%) (p&lt;0.001). There was non-significant relation between mean radiotherapy dose to axillary levels or the axillary vessels and development of lymphedema. Conclusion Breast cancer radiotherapy with 2D technique and conventional fractionation protocol might increase the risk of BCRL. No correlation was observed between radiotherapy dose to each axillary LN level, axillary vessels and BCRL.
DOI: 10.6084/m9.figshare.19085864.v1
title: Supplementary Material for: Evaluation of the Effect of Axillary Radiotherapy Dose and the Development of Lymphedema in Breast Cancer Patients

description: Purpose: The present study is aiming to correlate between different radiotherapy techniques, fractionations and doses received by each axillary LN level and axillary vessels with the development of breast cancer related lymphedema (BCRL). Methods and materials: We retrospectively studied 181 female breast cancer patients who were diagnosed and treated by radiation therapy during the period from January 2012- December 2017. The radiotherapy treatment plans were recalled from the archives. The axillary LN levels I, II, III, supraclavicular LN were contoured as well as axillary vessels. New dose volume histograms (DVHs) were generated to correlate between the radiotherapy dose t and the development of BCRL. Results: The study included 162 patients treated with 3D radiotherapy technique and 19 treated with 2D technique radiotherapy. 124 patients underwent MRM while 57 patients underwent BCS. 117 patients treated with hypofractionated technique while 64 patients treated with conventional radiotherapy technique . The cumulative incidence of BCRL after radiotherapy was 20.4%. There was a statistically significant relation between 2D radiotherapy technique compared with 3DCRT and development of lymphedema 55% vs 16.6% respectively(p&lt;0.001). Patients who were treated with conventional radiotherapy had significantly higher rates of lymphedema (42.2%) compared with hypofractionated radiotherapy (8.5%) (p&lt;0.001). There was non-significant relation between mean radiotherapy dose to axillary levels or the axillary vessels and development of lymphedema. Conclusion Breast cancer radiotherapy with 2D technique and conventional fractionation protocol might increase the risk of BCRL. No correlation was observed between radiotherapy dose to each axillary LN level, axillary vessels and BCRL.
DOI: 10.5281/zenodo.6354200
title: Data for "An Ensemble-Based Statistical Methodology to Detect Differences in Weather and Climate Model Executables" Part 1/2

description: Ensemble simulations from the weather and climate model COSMO. The data has been used for model verification cases in the corresponding paper (https://doi.org/10.5194/gmd-2021-248). The data is partitioned into the following parts: gpu_dycore.tar.gz<br> 5-day ensemble (600 members) produced with COSMO 5.09 GPU version in double precision. cpu_nodycore.tar.gz<br> 5-day ensemble (200 members) produced with COSMO 5.09 CPU version in double precision. gpu_dycore_sp.tar.gz<br> 5-day ensemble (200 members) produced with COSMO 5.09 GPU version in single precision. The second part of the dataset with the diffusion ensembles can be found here: https://doi.org/10.5281/zenodo.6355647
DOI: 10.5281/zenodo.5106466
title: Data for "An Ensemble-Based Statistical Methodology to Detect Differences in Weather and Climate Model Executables" Part 1/2

description: Ensemble simulations from the weather and climate model COSMO. The data has been used for model verification cases in the corresponding paper (https://doi.org/10.5194/gmd-2021-248). The data is partitioned into the following parts: gpu_dycore.tar.gz<br> 5-day ensemble (600 members) produced with COSMO 5.09 GPU version in double precision. cpu_nodycore.tar.gz<br> 5-day ensemble (200 members) produced with COSMO 5.09 CPU version in double precision. gpu_dycore_sp.tar.gz<br> 5-day ensemble (200 members) produced with COSMO 5.09 GPU version in single precision. The second part of the dataset with the diffusion ensembles can be found here: https://doi.org/10.5281/zenodo.6355647
DOI: 10.48370/ofd/4zyawl/8dz0wy
title: m-0872.tif

description: :unav
DOI: 10.48370/ofd/4zyawl/hutrq8
title: 872.S3Dm

description: :unav
DOI: 10.48370/ofd/4zyawl
title: Czyreń rdzawy (Fuscoporia ferruginosa (Schrad ex J.F. Gmelin) Murill [syn. Phellinus ferrugineofuscus (P. Karst) Boourdot]), 872

description: Grzyby makromycetes
DOI: 10.5517/ccdc.csd.cc24xf5p
title: CCDC 1993522: Experimental Crystal Structure Determination

description: Related Article: Dr Aswini Kalita|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc25bf98
title: CCDC 2006019: Experimental Crystal Structure Determination

description: Related Article: XIANGBING qi|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc274nnq
title: CCDC 2060063: Experimental Crystal Structure Determination

description: Related Article: XIANGBING qi|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc29bszf
title: CCDC 2125545: Experimental Crystal Structure Determination

description: Related Article: Dong-En Wu|2021|CSD Communication|||
DOI: 10.5281/zenodo.6355692
title: Data Augmentation for learning mechanical digital twins of voids in welding joints

description: In Source-2_Data_Augmentation: Exercice1_augmentation.ipynb Jupyter Notebook for data warpping of defect images. Exercice2_augmentation_multimodale.ipynb Jupyter Notebook for multimodal data augmentaion (defect images and mechanical fields) via oversampling Exercice3_clustering.ipynb Data clustering using the k-medoids algorithm applied to mechanical dissimilarity of the defects. k_medoids.py is a python code of a kmedoids algorithm. in Data: All_images.npy (numpy file) contains the defect images. All_Stresses.npy (numpy) contains mechanical fields, All_Stresses[k,i,j,ic,it] is the instance number k of the component ic of the Cauchy stress tensor at time it. The mechanical problem is decribed in 〈10.5802/crmeca.51〉. 〈hal-03113503〉. New_images_1.npy and New_Stresses_1.npy are augmented data for k=1. New_images_87.npy and New_Stresses_87.npy are augmented data for k=87. Dissimilarity_Stress.npy is the Frobenius norm of the distances between stress tensors (All_Stresses.npy).