cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/99t-lq6-nps
title: †Thisbites ronaldshayi Diener, 1906

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dyn-a5e-xsy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y6m-6kn-nt7
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kk3-bqz-zwx
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/smc-zdy-0c9
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rrw-ekv-hjp
title: Dipsastraea Blainville, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ts9-fns-930
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1m3-1kp-pv6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ycr-92g-yy6
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4yk-2c2-0p4
title: †Cyclolites cancellata (Goldfuss, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sy7-kk0-y5v
title: †Anasibirites multiformis Welter, 1922

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25549/inscriptifact-ouc110822030
title: Persepolis Fortification Elamite Tablet 2277.101, Fort 2277.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2277.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Upper edge, left edge broken.
DOI: 10.25549/inscriptifact-ouc110822127
title: Persepolis Fortification Elamite Tablet 2277.101, Fort 2277.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2277.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Upper edge, left edge broken.
DOI: 10.25549/inscriptifact-ouc110822153
title: Persepolis Fortification Elamite Tablet 2277.101, Fort 2277.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2277.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Upper edge, left edge broken.
DOI: 10.25549/inscriptifact-ouc110823094
title: Persepolis Fortification Elamite Tablet 2280.101, Fort 2280.101

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] Fort 2280.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on right edge, reverse, upper edge. ❧ [Physical Object Note:] Left side of tablet missing.
DOI: 10.25549/inscriptifact-ouc110823173
title: Persepolis Fortification Elamite Tablet 2280.101, Fort 2280.101

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] Fort 2280.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on right edge, reverse, upper edge. ❧ [Physical Object Note:] Left side of tablet missing.
DOI: 10.25549/inscriptifact-ouc110823089
title: Persepolis Fortification Elamite Tablet 2277.101, Fort 2277.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2277.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Upper edge, left edge broken.
DOI: 10.25549/inscriptifact-ouc110823063
title: Persepolis Fortification Elamite Tablet 2277.101, Fort 2277.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2277.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Upper edge, left edge broken.
DOI: 10.15468/dl.tvu2zz
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.4688 26.39913, -109.3188 26.39913, -109.3188 26.54913, -109.4688 26.54913, -109.4688 26.39913))"
 ]
}

 The dataset includes 394 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044290-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbu55e
title: Occurrence Download

description: A dataset containing 3023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((102.9 30.83,112.67 30.83,112.67 34.98,102.9 34.98,102.9 30.83))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Pteroceltis tatarinowii, Cotoneaster nitens, Keteleeria davidiana, Magnolia biondii, Panax bipinnatifidus, Pleione bulbocodioides, Pterocarya hupehensis, Pterostyrax psilophyllus, Rhododendron purdomii, Spiranthes sinensis, Cercidiphyllum japonicum, Epipactis mairei, Gastrodia elata, Magnolia sprengeri, Paris verticillata, Pinus bungeana, Pinus henryi, Dalbergia hupeana, Picea asperata, Acer erianthum)"
 ]
}

 The dataset includes 3023 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044293-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30655155
title: Yield envelope of minimal surface sheet-based stochastic metamaterials under multi-axial loading conditions

description: There is a growing interest in examining the mechanical characteristics of cellular structures derived from triply periodic minimal surfaces (TPMS) and spinodal decomposition due to advancements in additive manufacturing; however, thorough research on their yield behavior is missing in literature. This research uses finite element analysis to compute elastic and yield characteristics of stochastic TPMS and spinodal cellular structures. Stochastic TPMS cellular structures are generated by stochastically rotating the unit cells inside randomly distributed control volumes using different TPMS topologies, whereas spinodal cellular structures are generated by Gaussian random field (GRF) method. Elastic and yield characteristics of sheet-based stochastic cellular structures are examined numerically under multiple loading conditions, revealing that stochastic Gyroid demonstrates superior properties. Initial yield surfaces are developed for various loading conditions, demonstrating that stochastic cellular structures exhibit identical initial yield surfaces for various loading cases. Extended Hill yield criterion is identified as better capturing the initial yield surfaces of stochastic cellular structures. This study examines the impact of relative density on initial yield surfaces, revealing that these surfaces are independent of relative density. Our findings indicate that TPMS-based stochastic cellular structures can surpass spinodal cellular structures regarding elastic and yield properties when suitable TPMS topology is employed.
DOI: 10.6084/m9.figshare.30655155.v1
title: Yield envelope of minimal surface sheet-based stochastic metamaterials under multi-axial loading conditions

description: There is a growing interest in examining the mechanical characteristics of cellular structures derived from triply periodic minimal surfaces (TPMS) and spinodal decomposition due to advancements in additive manufacturing; however, thorough research on their yield behavior is missing in literature. This research uses finite element analysis to compute elastic and yield characteristics of stochastic TPMS and spinodal cellular structures. Stochastic TPMS cellular structures are generated by stochastically rotating the unit cells inside randomly distributed control volumes using different TPMS topologies, whereas spinodal cellular structures are generated by Gaussian random field (GRF) method. Elastic and yield characteristics of sheet-based stochastic cellular structures are examined numerically under multiple loading conditions, revealing that stochastic Gyroid demonstrates superior properties. Initial yield surfaces are developed for various loading conditions, demonstrating that stochastic cellular structures exhibit identical initial yield surfaces for various loading cases. Extended Hill yield criterion is identified as better capturing the initial yield surfaces of stochastic cellular structures. This study examines the impact of relative density on initial yield surfaces, revealing that these surfaces are independent of relative density. Our findings indicate that TPMS-based stochastic cellular structures can surpass spinodal cellular structures regarding elastic and yield properties when suitable TPMS topology is employed.
DOI: 10.15468/dl.fw8jba
title: Occurrence Download

description: A dataset containing 5233 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia cucullata"
 ]
}

 The dataset includes 5233 records from 303 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044291-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25505/fiz.icsd.cc2q1lyb
title: CSD 2503992: Experimental Crystal Structure Determination

description: Related Article: DEEPANKAR DAS|2025|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.9ngrkk
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-115.19666 12.41512,-79.80334 12.41512,-79.80334 26.58488,-115.19666 26.58488,-115.19666 12.41512))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Diphysa minutifolia"
 ]
}

 The dataset includes 61 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044294-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28600268
title: <b>Statistical modeling of immunoprecipitation efficiency of MeRIP-seq data enabled accurate detection and quantification of epitranscriptome</b>

description: The MeRIP-seq datasets used in the study titled <i>"Statistical modeling of immunoprecipitation efficiency of MeRIP-seq data enables accurate detection and quantification of epitranscriptome"</i> are obtained from GSE122744, GSE48037, and GSE106124.The first two datasets come from heart and liver tissues (GEO accession: GSE122744). The third dataset contains m6A profiling of U2OS cells treated with deazaadenosine (DAA) (GEO accession: GSE48037). The fourth dataset is from HEL cells (GEO accession: GSE106124).The read counts for U2OS are stored in <code>data/u2os-DAA.rds</code>, and the m6A sites Grange object is located in <code>data/m6Asites_81519_singlebase.rds</code>. Note that the U2OS dataset uses the hg19 genome assembly.For the other datasets, the IP and input read counts are stored in <code>data/SRR(2024-11-24)/Input_counts_108740.rds</code> and <code>data/SRR(2024-11-24)/IP_counts_108740.rds</code>, respectively. The corresponding m6A sites Grange object is located in <code>data/SRR(2024-11-24)/m6A_108740.rds</code>. The <code>colData.rds</code> file contains metadata indicating which columns correspond to specific studies, tissues, or cell lines.The code file contains all the code used in the study, and the results are stored in <code>data/results</code>.<br>Cite:Statistical modeling of immunoprecipitation efficiency of MeRIP-seq data enabled accurate detection and quantification of epitranscriptome - ScienceDirect
DOI: 10.6084/m9.figshare.28600268.v2
title: <b>Statistical modeling of immunoprecipitation efficiency of MeRIP-seq data enabled accurate detection and quantification of epitranscriptome</b>

description: The MeRIP-seq datasets used in the study titled <i>"Statistical modeling of immunoprecipitation efficiency of MeRIP-seq data enables accurate detection and quantification of epitranscriptome"</i> are obtained from GSE122744, GSE48037, and GSE106124.The first two datasets come from heart and liver tissues (GEO accession: GSE122744). The third dataset contains m6A profiling of U2OS cells treated with deazaadenosine (DAA) (GEO accession: GSE48037). The fourth dataset is from HEL cells (GEO accession: GSE106124).The read counts for U2OS are stored in <code>data/u2os-DAA.rds</code>, and the m6A sites Grange object is located in <code>data/m6Asites_81519_singlebase.rds</code>. Note that the U2OS dataset uses the hg19 genome assembly.For the other datasets, the IP and input read counts are stored in <code>data/SRR(2024-11-24)/Input_counts_108740.rds</code> and <code>data/SRR(2024-11-24)/IP_counts_108740.rds</code>, respectively. The corresponding m6A sites Grange object is located in <code>data/SRR(2024-11-24)/m6A_108740.rds</code>. The <code>colData.rds</code> file contains metadata indicating which columns correspond to specific studies, tissues, or cell lines.The code file contains all the code used in the study, and the results are stored in <code>data/results</code>.<br>Cite:Statistical modeling of immunoprecipitation efficiency of MeRIP-seq data enabled accurate detection and quantification of epitranscriptome - ScienceDirect
DOI: 10.6084/m9.figshare.28600268.v1
title: <b>Statistical modeling of immunoprecipitation efficiency of MeRIP-seq data enabled accurate detection and quantification of epitranscriptome</b>

description: The MeRIP-seq datasets used in the study titled <i>"Statistical modeling of immunoprecipitation efficiency of MeRIP-seq data enables accurate detection and quantification of epitranscriptome"</i> are obtained from GSE122744, GSE48037, and GSE106124.The first two datasets come from heart and liver tissues (GEO accession: GSE122744). The third dataset contains m6A profiling of U2OS cells treated with deazaadenosine (DAA) (GEO accession: GSE48037). The fourth dataset is from HEL cells (GEO accession: GSE106124).The read counts for U2OS are stored in <code>data/u2os-DAA.rds</code>, and the m6A sites Grange object is located in <code>data/m6Asites_81519_singlebase.rds</code>. Note that the U2OS dataset uses the hg19 genome assembly.For the other datasets, the IP and input read counts are stored in <code>data/SRR(2024-11-24)/Input_counts_108740.rds</code> and <code>data/SRR(2024-11-24)/IP_counts_108740.rds</code>, respectively. The corresponding m6A sites Grange object is located in <code>data/SRR(2024-11-24)/m6A_108740.rds</code>. The <code>colData.rds</code> file contains metadata indicating which columns correspond to specific studies, tissues, or cell lines.The code file contains all the code used in the study, and the results are stored in <code>data/results</code>.
DOI: 10.22002/09522-m1y54
title: Azospirillum Delta Operon 4

description: Raw data files of Azospirillum Delta Operon 4
description: <strong>Tilt Series Date:</strong> 2015-04-30</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Azospirillum brasilense</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: 8.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Gladys Alexandre</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-04-30-18/rawdata/</p>deltaOp4april0006.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-04-30-18/rawdata/deltaOp4april0006.mrc"
        > <i class="download icon"></i> Download </a></p>

        deltaOp4april0006.rec,  Reconstruction (Pixel Size 1.28 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-04-30-18/3dimage_55230/deltaOp4april0006.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2wmd6-cdv52
title: B. subtilis AD3268

description: Alp7AR dynamic filaments in skinny Bacillus
description: <strong>Tilt Series Date:</strong> 2015-03-29</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3268, ponA null, Alp7A</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano and Alan Derman</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-03-29-1/rawdata/</p>32680001.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-03-29-1/rawdata/32680001.mrc"
        > <i class="download icon"></i> Download </a></p>

        32680001_part121_2.rec,  Reconstruction (Pixel Size 2.0 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-03-29-1/3dimage_53442/32680001_part121_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/kxh8d-hh724
title: E. coli pED208_6um

description: Raw data files of E. coli pED208_6um
description: <strong>Tilt Series Date:</strong> 2015-01-17</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells were grown in LB o/n</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-17-38/rawdata/</p>ped208_6um0034.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-17-38/rawdata/ped208_6um0034.mrc"
        > <i class="download icon"></i> Download </a></p>

        ped208_6um0034_part121_5.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-17-38/3dimage_50932/ped208_6um0034_part121_5.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/wt351-3w009
title: twitching Pseudomonas WT

description: Box YWC219-1Cells incubated on grid to promote twitching
description: <strong>Tilt Series Date:</strong> 2016-08-21</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Sample prepared in collaboration with Alex Persat</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-08-21-16/rawdata/</p>20160821_YWC219_20013.mrc,  Tilt Series (Pixel Size 0.39 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-08-21-16/rawdata/20160821_YWC219_20013.mrc"
        > <i class="download icon"></i> Download </a></p>

        20160821_YWC219_20013_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-08-21-16/3dimage_78243/20160821_YWC219_20013_full.rec"
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