cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16635735
title: Maternal genetic diversity, differentiation and phylogeny of three white yak breeds/populations in China

description: White yak is a unique economic livestock animal on the Qilian Mountains of Qinghai-Tibet Plateau (QTP). Here, 369 mitochondrial D-loop sequences from three Chinese white yak breeds/populations (Tianzhu, Menyuan and Huzhu) were comprehensively analyzed to indicate their maternal genetic diversity, differentiation and phylogenetic relationship. Our results showed that the haplotype diversity (Hd) was found to be highest in Tianzhu white yak (Hd ± SD = 0.9501 ± 0.0058), while the lowest was recorded in Huzhu white yak (Hd ± SD = 0.7178 ± 0.0474). Totally, the haplotype and nucleotide diversities of white yak were 0.9407 ± 0.0069 and 0.0187 ± 0.0094, respectively, indicating an abundant maternal genetic diversity in white yak. Estimates of <i>F<sub>ST</sub></i> (Fixation Index) values showed a high genetic differentiation between Tianzhu and Menyuan populations (<i>F<sub>ST</sub></i> = 0.2928, <i>p</i> &lt; 0.05) as well as that between Tianzhu and Huzhu populations (<i>F<sub>ST</sub></i> = 0.2721, <i>p</i> &lt; 0.05), but a moderate genetic differentiation between Menyuan and Huzhu populations (<i>F<sub>ST</sub></i> = 0.1352, <i>p</i> &gt; 0.05) was observed. Cluster analysis based on <i>F<sub>ST</sub></i> values among populations indicated that the genetic relationship between Menyuan and Huzhu white yak was closer, but they had a far genetic relationship with Tianzhu white yak. Maternal phylogenetic analysis revealed that white yak represented two maternal lineages (I and II), suggesting two maternal origins. In addition, it is notable that taurine mtDNA haplotypes were detected in Tianzhu and Huzhu white yak populations, indicating taurine genetic introgression to some extent. Our study would provide useful information for the conservation and utilization of white yak.
DOI: 10.6084/m9.figshare.16635735.v1
title: Maternal genetic diversity, differentiation and phylogeny of three white yak breeds/populations in China

description: White yak is a unique economic livestock animal on the Qilian Mountains of Qinghai-Tibet Plateau (QTP). Here, 369 mitochondrial D-loop sequences from three Chinese white yak breeds/populations (Tianzhu, Menyuan and Huzhu) were comprehensively analyzed to indicate their maternal genetic diversity, differentiation and phylogenetic relationship. Our results showed that the haplotype diversity (Hd) was found to be highest in Tianzhu white yak (Hd ± SD = 0.9501 ± 0.0058), while the lowest was recorded in Huzhu white yak (Hd ± SD = 0.7178 ± 0.0474). Totally, the haplotype and nucleotide diversities of white yak were 0.9407 ± 0.0069 and 0.0187 ± 0.0094, respectively, indicating an abundant maternal genetic diversity in white yak. Estimates of <i>F<sub>ST</sub></i> (Fixation Index) values showed a high genetic differentiation between Tianzhu and Menyuan populations (<i>F<sub>ST</sub></i> = 0.2928, <i>p</i> &lt; 0.05) as well as that between Tianzhu and Huzhu populations (<i>F<sub>ST</sub></i> = 0.2721, <i>p</i> &lt; 0.05), but a moderate genetic differentiation between Menyuan and Huzhu populations (<i>F<sub>ST</sub></i> = 0.1352, <i>p</i> &gt; 0.05) was observed. Cluster analysis based on <i>F<sub>ST</sub></i> values among populations indicated that the genetic relationship between Menyuan and Huzhu white yak was closer, but they had a far genetic relationship with Tianzhu white yak. Maternal phylogenetic analysis revealed that white yak represented two maternal lineages (I and II), suggesting two maternal origins. In addition, it is notable that taurine mtDNA haplotypes were detected in Tianzhu and Huzhu white yak populations, indicating taurine genetic introgression to some extent. Our study would provide useful information for the conservation and utilization of white yak.
DOI: 10.6084/m9.figshare.11917197.v1
title: Additional file 5 of Identification and characterization of circRNAs in the skin during wool follicle development in Aohan fine wool sheep

description: Additional file 5 : Table S5. Detailed results of KEGG pathway analysis for source genes of identified circRNAs. (Table S5A: Birth compared to E90d; Table S5B: Birth compared to E120d; Table S5C: E120d compared to E90d).
DOI: 10.6084/m9.figshare.11917188.v1
title: Additional file 2 of A snapshot of microbial diversity and function in an undisturbed sugarcane bagasse pile

description: Additional file 2. List of unique 16S amplicons assigned to individual OTUs, their taxonomic classification to the genus level and the number of times these were amplified from each sample (after rarefaction to 45,000 to reduce sample heterogeneity).
DOI: 10.6084/m9.figshare.11917194
title: Additional file 3 of A snapshot of microbial diversity and function in an undisturbed sugarcane bagasse pile

description: Additional file 3. List of unique ITS amplicons assigned to individual OTUs, their taxonomic classification to the species level and the number of times these were amplified from each sample (after rarefaction to 41,000 to reduce sample heterogeneity).
DOI: 10.6084/m9.figshare.11917200.v1
title: Additional file 4 of A snapshot of microbial diversity and function in an undisturbed sugarcane bagasse pile

description: Additional file 4. Taxonomic classification of 16S OTUs at six levels (kingdom to genus) and their abundance in each sample (after rarefaction).
DOI: 10.6084/m9.figshare.11917227.v1
title: Additional file 1 of Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women

description: Additional file 1. A complete list of the identified genes differentially expressed in the pre- and postmenopausal women.
DOI: 10.6084/m9.figshare.12965822
title: Additional file 1 of Multi-omics profiling reveals microRNA-mediated insulin signaling networks

description: Additional file 1. RNA-seq data.
DOI: 10.6084/m9.figshare.12441701
title: Additional file 2 of Source-sink modifications affect leaf senescence and grain mass in wheat as revealed by proteomic analysis

description: Additional file 2 Table S2. Two manipulation-related DEPs identified in GO categories and were grouped into three levels: biological process (BP), cellular component (CC) and molecular function (MF)
DOI: 10.6084/m9.figshare.11917248
title: Additional file 3 of Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women

description: Additional file 3. The slim term Ageing identified among the downregulated DEGs.
DOI: 10.6084/m9.figshare.12965822.v1
title: Additional file 1 of Multi-omics profiling reveals microRNA-mediated insulin signaling networks

description: Additional file 1. RNA-seq data.
DOI: 10.6073/pasta/9e51fb6b1367cd5f3ac56a5659abb8cc
title: Temperature, floral density, and Osmia pollen usage data from seven study sites around the Rocky Mountain Biological Laboratory, Colorado: 2013-2023

description: Data were collected as part of a study of population dynamics of solitary, cavity-nesting Hymenoptera. Nesting structures ("trap-nests") were established at five study sites along an elevational gradient around the Rocky Mountain Biological Laboratory in 2013. Two additional study sites were added in 2014, and one of the original study sites was dropped at the end of 2015. At each site, a HOBO data-logger placed under a centrally located trap-nest records air temperatures hourly. Floral densities are recorded at each site, typically 1-2 times per week, throughout the growing season, for specific plant taxa known to be used as pollen sources by cavity-nesting bees. In addition, pollen samples are taken from the nests of cavity-nesting bees and the constituent plant taxa identified by microscopic comparison with a reference pollen collection from the study area.
DOI: 10.6084/m9.figshare.11917263
title: Additional file 6 of Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women

description: Additional file 6. The complete MEGCN.
DOI: 10.6084/m9.figshare.11917227
title: Additional file 1 of Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women

description: Additional file 1. A complete list of the identified genes differentially expressed in the pre- and postmenopausal women.
DOI: 10.5281/zenodo.5655511
title: Animal mentions in the travel accounts of Guillebert de Lannoy, Bertrandon de la Broquière, Anselm Adornes and Joos van Ghistele

description: Dataset of all animals mentioned in the travel accounts of Joos van Ghistele, Guillebert de Lannoy, Anselm Adornes and Bertrandon de la Broquière. The page numbers refer to the pages in the following editions of the travel accounts: Bertrandon de la Broquière. <em>Le voyage d’outremer de Bertrandon de La Broquière, premier écuyer tranchant et conseiller de Philippe le Bon, duc de Bourgogne</em>. Edited by Charles Schefer. Paris: Ernest Leroux, 1892. Can be consulted online on https://gallica.bnf.fr/ark:/12148/bpt6k1037921 Ghillebert de Lannoy. <em>Oeuvres de Ghillebert de Lannoy, voyageur, diplomate et moraliste</em>. Edited by Charles Potvin. Leuven: Imprimerie de P. et J. Lefever, 1878. Can be consulted online on https://gallica.bnf.fr/ark:/12148/bpt6k102047r Adorno, Jean. <em>Itinéraire d’Anselme Adorno en Terre sainte: 1470-1471</em>. Edited by Jacques Heers and Georgette de Groer. Sources d’histoire médiévale. Paris: Éditions du Centre national de la recherche scientifique, 1978. https://www.worldcat.org/title/itineraire-danselme-adorno-en-terre-sainte-1470-1471/oclc/248218555 Zeebout, Ambrosius. <em>Tvoyage van Mher Joos van Ghistele</em>. Edited by R. J. G. A. A. Gaspar. Hilversum: Verloren, 1998. Can be consulted online on https://www.dbnl.org/tekst/zeeb002tvoy01_01/index.php The following information can be found in the animal index – The referenced source edition: JVG (Joos van Ghistele), AA (Anselm Adornes), BDLB (Bertrandon de la Broquière) or GDL (Guillebert de Lannoy). – Animal name: the modern English common name of the mentioned animal. – Page: the page number in the source edition. – Original name: the name given by the author to the animal and the original source fragment. – Location of the animal: the location (city, country, …) of the referenced animal, sometimes unidentified. – Observed by the writer? Did the writer encounter this animal himself: yes, no or maybe – Referring to another source? Do the fragment and the information about the animal originate from a source outside the author’s observation? These can be oral or written sources This dataset was used to research the topic of animal depictions and attitudes towards animals in late medieval travel accounts. The dataset forms the basis of a (Dutch) Master’s thesis at Ghent University in 2020, which can be downloaded from (https://lib.ugent.be/catalog/rug01:002862696) and a forthcoming article in Reinardus Yearbook. Questions or remarks can be sent to thijs.temmerman@gmail.com
DOI: 10.5281/zenodo.5655510
title: Animal mentions in the travel accounts of Guillebert de Lannoy, Bertrandon de la Broquière, Anselm Adornes and Joos van Ghistele

description: Dataset of all animals mentioned in the travel accounts of Joos van Ghistele, Guillebert de Lannoy, Anselm Adornes and Bertrandon de la Broquière.

This dataset was used to research the topic of animal depictions and attitudes towards animals in late medieval travel accounts. The dataset forms the basis of a (Dutch) Master’s thesis at Ghent University in 2020, which can be downloaded from (https://lib.ugent.be/catalog/rug01:002862696) and the following article in Reinardus: Yearbook of the International Reynard Society: Temmerman, Thijs, and Jeroen Deploige. ‘Prius Invisa Animalia : Attitudes towards Animals in Late Medieval Travel Accounts’. Reinardus 35 (2023): 163-90. https://doi.org/10.1075/rein.00074.tem.

The page numbers refer to the pages in the following editions of the travel accounts:





Bertrandon de la Broquière. Le voyage d’outremer de Bertrandon de La Broquière, premier écuyer tranchant et conseiller de Philippe le Bon, duc de Bourgogne. Edited by Charles Schefer. Paris: Ernest Leroux, 1892. Can be consulted online on https://gallica.bnf.fr/ark:/12148/bpt6k1037921




Ghillebert de Lannoy. Oeuvres de Ghillebert de Lannoy, voyageur, diplomate et moraliste. Edited by Charles Potvin. Leuven: Imprimerie de P. et J. Lefever, 1878. Can be consulted online on https://gallica.bnf.fr/ark:/12148/bpt6k102047r




Adorno, Jean. Itinéraire d’Anselme Adorno en Terre sainte: 1470-1471. Edited by Jacques Heers and Georgette de Groer. Sources d’histoire médiévale. Paris: Éditions du Centre national de la recherche scientifique, 1978. https://www.worldcat.org/title/itineraire-danselme-adorno-en-terre-sainte-1470-1471/oclc/248218555




Zeebout, Ambrosius. Tvoyage van Mher Joos van Ghistele. Edited by R. J. G. A. A. Gaspar. Hilversum: Verloren, 1998. Can be consulted online on https://www.dbnl.org/tekst/zeeb002tvoy01_01/index.php



The following information can be found in the animal index

– The referenced source edition: JVG (Joos van Ghistele), AA (Anselm Adornes), BDLB (Bertrandon de la Broquière) or GDL (Guillebert de Lannoy).

– Animal name: the modern English common name of the mentioned animal.

– Page: the page number in the source edition.

– Original name: the name given by the author to the animal and the original source fragment.

– Location of the animal: the location (city, country, …) of the referenced animal, sometimes unidentified.

– Observed by the writer? Did the writer encounter this animal himself: yes, no or maybe.

– Referring to another source? Do the fragment and the information about the animal originate from a source outside the author’s observation? These can be oral or written sources.

Questions or remarks can be sent to thijs.temmerman@gmail.com
DOI: 10.5281/zenodo.7371049
title: Animal mentions in the travel accounts of Guillebert de Lannoy, Bertrandon de la Broquière, Anselm Adornes and Joos van Ghistele

description: Dataset of all animals mentioned in the travel accounts of Joos van Ghistele, Guillebert de Lannoy, Anselm Adornes and Bertrandon de la Broquière.

This dataset was used to research the topic of animal depictions and attitudes towards animals in late medieval travel accounts. The dataset forms the basis of a (Dutch) Master’s thesis at Ghent University in 2020, which can be downloaded from (https://lib.ugent.be/catalog/rug01:002862696) and the following article in Reinardus: Yearbook of the International Reynard Society: Temmerman, Thijs, and Jeroen Deploige. ‘Prius Invisa Animalia : Attitudes towards Animals in Late Medieval Travel Accounts’. Reinardus 35 (2023): 163-90. https://doi.org/10.1075/rein.00074.tem.

The page numbers refer to the pages in the following editions of the travel accounts:





Bertrandon de la Broquière. Le voyage d’outremer de Bertrandon de La Broquière, premier écuyer tranchant et conseiller de Philippe le Bon, duc de Bourgogne. Edited by Charles Schefer. Paris: Ernest Leroux, 1892. Can be consulted online on https://gallica.bnf.fr/ark:/12148/bpt6k1037921




Ghillebert de Lannoy. Oeuvres de Ghillebert de Lannoy, voyageur, diplomate et moraliste. Edited by Charles Potvin. Leuven: Imprimerie de P. et J. Lefever, 1878. Can be consulted online on https://gallica.bnf.fr/ark:/12148/bpt6k102047r




Adorno, Jean. Itinéraire d’Anselme Adorno en Terre sainte: 1470-1471. Edited by Jacques Heers and Georgette de Groer. Sources d’histoire médiévale. Paris: Éditions du Centre national de la recherche scientifique, 1978. https://www.worldcat.org/title/itineraire-danselme-adorno-en-terre-sainte-1470-1471/oclc/248218555




Zeebout, Ambrosius. Tvoyage van Mher Joos van Ghistele. Edited by R. J. G. A. A. Gaspar. Hilversum: Verloren, 1998. Can be consulted online on https://www.dbnl.org/tekst/zeeb002tvoy01_01/index.php



The following information can be found in the animal index

– The referenced source edition: JVG (Joos van Ghistele), AA (Anselm Adornes), BDLB (Bertrandon de la Broquière) or GDL (Guillebert de Lannoy).

– Animal name: the modern English common name of the mentioned animal.

– Page: the page number in the source edition.

– Original name: the name given by the author to the animal and the original source fragment.

– Location of the animal: the location (city, country, …) of the referenced animal, sometimes unidentified.

– Observed by the writer? Did the writer encounter this animal himself: yes, no or maybe.

– Referring to another source? Do the fragment and the information about the animal originate from a source outside the author’s observation? These can be oral or written sources.

Questions or remarks can be sent to thijs.temmerman@gmail.com
DOI: 10.6084/m9.figshare.11917269
title: Additional file 7 of Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women

description: Additional file 7. Primers used in this study.
DOI: 10.6084/m9.figshare.7203881
title: Additional file 2: of Metabolite profiling and transcriptomic analyses reveal an essential role of UVR8-mediated signal transduction pathway in regulating flavonoid biosynthesis in tea plants (Camellia sinensis) in response to shading

description: Statistics information from the generated transcriptome reads. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7203893.v1
title: Additional file 3: of Metabolite profiling and transcriptomic analyses reveal an essential role of UVR8-mediated signal transduction pathway in regulating flavonoid biosynthesis in tea plants (Camellia sinensis) in response to shading

description: Transcript abundance of main genes involved in the flavonoid biosynthetic pathway annotated in tea transcriptome datasets. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7203926.v1
title: Additional file 5: of Metabolite profiling and transcriptomic analyses reveal an essential role of UVR8-mediated signal transduction pathway in regulating flavonoid biosynthesis in tea plants (Camellia sinensis) in response to shading

description: Transcript abundance of potential genes involved in the UVR8-mediated signal transduction pathway annotated in tea transcriptome datasets. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6679709.v1
title: Additional file 10: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

description: Table S6. Primer sequences for RT-qPCR. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.7204004.v1
title: Additional file 1: of Differentially expressed non-coding RNAs induced by transmissible gastroenteritis virus potentially regulate inflammation and NF-ÎşB pathway in porcine intestinal epithelial cell line

description: Table S1. The detailed information of differentially expressed mRNAs. Table S2. The detailed information of differentially expressed miRNAs. Table S3. The detailed information of differentially expressed circRNAs. Table S4. The target genes of differentially expressed miRNAs. Table S5. Source genes of differentially expressed circRNAs. Table S6. The interactions between miRNAs and mRNAs. Table S7. The circRNA-miRNA-mRNA regulation network. Table S8. The sequences of miR-22 mimics and inhibitors. Table S9. The primers designed of qRT-PCR and PCR. (ZIP 282 kb)
DOI: 10.6084/m9.figshare.11917248.v1
title: Additional file 3 of Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women

description: Additional file 3. The slim term Ageing identified among the downregulated DEGs.
DOI: 10.6084/m9.figshare.12965825.v1
title: Additional file 2 of Multi-omics profiling reveals microRNA-mediated insulin signaling networks

description: Additional file 2. sRNA-seq data.
DOI: 10.6084/m9.figshare.12965864.v1
title: Additional file 18 of Estimate of the sequenced proportion of the global prokaryotic genome

description: Additional file 18: Supplementary dataset 2. Bcell, BOTU and POTU of different environment types.
DOI: 10.6084/m9.figshare.11917257.v1
title: Additional file 5 of Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women

description: Additional file 5. A summary of the WGCN.
DOI: 10.6084/m9.figshare.11917269.v1
title: Additional file 7 of Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women

description: Additional file 7. Primers used in this study.
DOI: 10.6084/m9.figshare.12965867
title: Additional file 19 of Estimate of the sequenced proportion of the global prokaryotic genome

description: Additional file 19: Supplementary dataset 3. Summary of 262,011 OTUs and predominant taxa.
DOI: 10.15156/bio/sh512234.07fu
title: SH512234.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh512235.07fu
title: SH512235.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2779797.08fu
title: SH2779797.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.