cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13076387.v2
title: deep-sea anemone genome

description: Genome assembly and annotation files of a new deep-sea anemone species (<i>Paraphelliactis</i> sp.) living at a depth of 3,230 m in the Xisha Trough in the South China Sea. Related article "The genome of a new deep-sea anemone species provides insights into deep-sea adaptation" is being reviewed in Jornal Deep-Sea Research Part I: Oceanographic Research Papers.<br>
DOI: 10.6084/m9.figshare.7962986.v3
title: Shararati Prabhutv Aur Netratv

description: International Journal of Management Sociology & Humanities, April 2019, Volume 10 (4), Pages 21-30
DOI: 10.6084/m9.figshare.7582178.v1
title: Dr.NeetuSinghKaFarrukhabadMenJansampark-VyaktiVivran

description: Dr. Neetu Singh Tomar Ka Farrukhabad Men Jansampark-Vyakti Vivran (Dated 07-02-2015 to Dated 05-02-2018)
DOI: 10.5281/zenodo.4429719
title: beatrizmilz/mananciais: Mananciais

description: Base de dados da SABESP sobre volume armazenado em mananciais de abastecimento público na Região Metropolitana de São Paulo (SP - Brasil). Dados de 2000 à 2021 - Atualizado diariamente.
DOI: 10.6084/m9.figshare.13550171.v2
title: InflammatoryGenesExpresionProfile2

description: The data consist of transcriptome profiling performed using the Ion AmpliSeq Transcriptome Gene Expression Kit (Thermo Fisher Scientific, USA), enabling the simultaneous measurement of 20.812 human genes' expression level in a single assay.<br>Sequencing was conducted on 15 older female subjects; 5 met Late-Onset Alzheimer Disease (LOAD) diagnosis criteria and 10 healthy controls; Data was used to identify hub genes and molecular processes associated with LOAD-related inflammation.<br>
DOI: 10.6084/m9.figshare.13550171
title: InflammatoryGenesExpresionProfile2

description: The data consist of transcriptome profiling performed using the Ion AmpliSeq Transcriptome Gene Expression Kit (Thermo Fisher Scientific, USA), enabling the simultaneous measurement of 20.812 human genes' expression level in a single assay.<br>Sequencing was conducted on 15 older female subjects; 5 met Late-Onset Alzheimer Disease (LOAD) diagnosis criteria and 10 healthy controls; Data was used to identify hub genes and molecular processes associated with LOAD-related inflammation.<br>
DOI: 10.6084/m9.figshare.13550171.v1
title: InflammatoryGenesExpresionProfile2

description: The data consist of transcriptome profiling performed using the Ion AmpliSeq Transcriptome Gene Expression Kit (Thermo Fisher Scientific, USA), enabling the simultaneous measurement of 20.812 human genes' expression level in a single assay.<br>Sequencing was conducted on 15 older female subjects; 5 met Late-Onset Alzheimer Disease (LOAD) diagnosis criteria and 10 healthy controls; Data was used to identify hub genes and molecular processes associated with LOAD-related inflammation.<br>
DOI: 10.5519/qd.kfk7f71p
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (20901 records)
DOI: 10.6084/m9.figshare.13550084.v1
title: InflammatoryGenesExpresionProfile1

description: The data consist of transcriptome profiling performed using the Ion AmpliSeq Transcriptome Gene Expression Kit (Thermo Fisher Scientific, USA), enabling the simultaneous measurement of 20.812 human genes' expression level in a single assay.<br>Sequencing was conducted on 15 older female subjects; 5 met Late-Onset Alzheimer Disease (LOAD) diagnosis criteria and 10 healthy controls; Data was used to identify hub genes and molecular processes associated with LOAD-related inflammation.
DOI: 10.6084/m9.figshare.13550084
title: InflammatoryGenesExpresionProfile1

description: The data consist of transcriptome profiling performed using the Ion AmpliSeq Transcriptome Gene Expression Kit (Thermo Fisher Scientific, USA), enabling the simultaneous measurement of 20.812 human genes' expression level in a single assay.<br>Sequencing was conducted on 15 older female subjects; 5 met Late-Onset Alzheimer Disease (LOAD) diagnosis criteria and 10 healthy controls; Data was used to identify hub genes and molecular processes associated with LOAD-related inflammation.
DOI: 10.6084/m9.figshare.13550084.v3
title: InflammatoryGenesExpresionProfile1

description: The data consist of transcriptome profiling performed using the Ion AmpliSeq Transcriptome Gene Expression Kit (Thermo Fisher Scientific, USA), enabling the simultaneous measurement of 20.812 human genes' expression level in a single assay.<br>Sequencing was conducted on 15 older female subjects; 5 met Late-Onset Alzheimer Disease (LOAD) diagnosis criteria and 10 healthy controls; Data was used to identify hub genes and molecular processes associated with LOAD-related inflammation.
DOI: 10.6084/m9.figshare.13550084.v2
title: InflammatoryGenesExpresionProfile1

description: The data consist of transcriptome profiling performed using the Ion AmpliSeq Transcriptome Gene Expression Kit (Thermo Fisher Scientific, USA), enabling the simultaneous measurement of 20.812 human genes' expression level in a single assay.<br>Sequencing was conducted on 15 older female subjects; 5 met Late-Onset Alzheimer Disease (LOAD) diagnosis criteria and 10 healthy controls; Data was used to identify hub genes and molecular processes associated with LOAD-related inflammation.
DOI: 10.6084/m9.figshare.13550384
title: Metabolite BridgeDb ID Mapping Database (20210109)

description: BridgeDb ID mapping database for metabolites, using the latest data release of HMDB 4.0 (Release of 2020-09-09), ChEBI 193 (Release of 01 Jan. 2021), and Wikidata (09 Jan. 2021) as data sources.<br>Quality control was performed with BridgeDb (2.3.3) against version 20201104 [https://doi.org/10.6084/m9.figshare.13187585].<br>Contains a large update for InChIKey mappings (&gt;27% removed) and PubChem-compound (&gt;37% added).
DOI: 10.17632/3ybp248t8j.1
title: Data for: The Nickel isotope composition of the authigenic sink and the diagenetic flux in modern oceans

description: Major and trace elements data and Ni isotopes data described and discussed in the paper.
DOI: 10.6084/m9.figshare.13207562
title: Cleaning process - effectively removed all cross-talk

description: BLAST pair-wise results among the 10 MAST species involved before and after the cleaning. Combining the size of the alignment among genomes and its mean similarity, we calculated the percentage of each genome that was contaminated. These values were 0.1-10% (mean 3.7%) before decontamination and virtually zero after decontamination.
DOI: 10.6084/m9.figshare.13203998
title: Gene Predictions

description: Genes predicted from co-assemblies genome
DOI: 10.6084/m9.figshare.13203953
title: Phylogenetic trees

description: <br><b>Fig. S1. </b>Phylogenetic tree of the taxa used for comparative genomics analysis, including the 15 uncultured MAST species, using the 18S rDNA gene. The tree was generated with IQTREE using 1000 trees for topology and 1000 trees for bootstrapping. Five non-stramenopile taxa were used as outgroup. Eukaryotic species were assigned to a trophic lifestyle. <br><br><b>Fig. 5. </b>Phylogenetic tree of microbial type I rhodopsins based on 207 protein sequences, including the new MASTs, showing the recognized groups and their prevalent function. Black dots indicate bootstrap support &gt;80% over 1000 replicates. Stars highlight sequences recovered from co-assemblies.<br><b>Fig. S6. </b>Phylogenetic tree of V-ATPases and the related F-ATPases genes constructed from recent bibliographical references (see Material and Methods). MASTs lineages are represented in orange. Values at nodes correspond to bootstraps &gt; 80%.<br><br><b>Fig. S7. </b>Phylogenetic tree of V-PPases genes constructed from recent bibliographical references (see Material and Methods). MASTs lineages are represented in orange. Values at nodes correspond to bootstraps &gt; 80%.<br>
DOI: 10.6084/m9.figshare.13203953.v1
title: Phylogenetic trees

description: <br><b>Fig. S1. </b>Phylogenetic tree of the taxa used for comparative genomics analysis, including the 15 uncultured MAST species, using the 18S rDNA gene. The tree was generated with IQTREE using 1000 trees for topology and 1000 trees for bootstrapping. Five non-stramenopile taxa were used as outgroup. Eukaryotic species were assigned to a trophic lifestyle. <br><br><b>Fig. 5. </b>Phylogenetic tree of microbial type I rhodopsins based on 207 protein sequences, including the new MASTs, showing the recognized groups and their prevalent function. Black dots indicate bootstrap support &gt;80% over 1000 replicates. Stars highlight sequences recovered from co-assemblies.<br><b>Fig. S6. </b>Phylogenetic tree of V-ATPases and the related F-ATPases genes constructed from recent bibliographical references (see Material and Methods). MASTs lineages are represented in orange. Values at nodes correspond to bootstraps &gt; 80%.<br><br><b>Fig. S7. </b>Phylogenetic tree of V-PPases genes constructed from recent bibliographical references (see Material and Methods). MASTs lineages are represented in orange. Values at nodes correspond to bootstraps &gt; 80%.<br>
DOI: 10.6084/m9.figshare.12430790
title: Co-assembly

description: Collection of 15 co-assembled genome from MAST species
DOI: 10.6084/m9.figshare.12430790.v1
title: Co-assembly

description: Collection of 15 co-assembled genome from MAST species
DOI: 10.6084/m9.figshare.12429905
title: Alignment files

description: - Alignment references in Fig.4,5,S6,S7<br>
DOI: 10.5517/ccdc.csd.cc25fs1g
title: CCDC 2009235: Experimental Crystal Structure Determination

description: Related Article: Li Tian|2020|CSD Communication|||
description: Related Article: Zhi Long Ma, Meng Chen Wang, Jian Yun Shi, Li Tian|2021|J.Mol.Struct.|1229|129804|doi:10.1016/j.molstruc.2020.129804
DOI: 10.5517/ccdc.csd.cc2678vl
title: CCDC 2032789: Experimental Crystal Structure Determination

description: Related Article: Jiawei Chen, Hunter B. Vibbert, Chengbo Yao, Amymarie K. Bartholomew, Alexander P. Aydt, Steffen Jockusch, Jack R. Norton, Matthew Hammond, Michael Rauch|2020|Organometallics|39|4592|doi:10.1021/acs.organomet.0c00645
DOI: 10.5517/ccdc.csd.cc2678wm
title: CCDC 2032790: Experimental Crystal Structure Determination

description: Related Article: Jiawei Chen, Hunter B. Vibbert, Chengbo Yao, Amymarie K. Bartholomew, Alexander P. Aydt, Steffen Jockusch, Jack R. Norton, Matthew Hammond, Michael Rauch|2020|Organometallics|39|4592|doi:10.1021/acs.organomet.0c00645
DOI: 10.5517/ccdc.csd.cc2678xn
title: CCDC 2032791: Experimental Crystal Structure Determination

description: Related Article: Jiawei Chen, Hunter B. Vibbert, Chengbo Yao, Amymarie K. Bartholomew, Alexander P. Aydt, Steffen Jockusch, Jack R. Norton, Matthew Hammond, Michael Rauch|2020|Organometallics|39|4592|doi:10.1021/acs.organomet.0c00645
DOI: 10.21227/kkee-7k54
title: Impact of Cognitive Biases on Progressive Visualization

description: This data is in support of the paper "Impact of Cognitive Biases on Progressive Visualization", currently under review.
DOI: 10.6084/m9.figshare.13550372.v1
title: dataset_1_test.json

description: Test portion of neVANiLLa dataset 1<br>
DOI: 10.21227/4zjc-ab24
title: Impact of Cognitive Biases on Progressive Visualization

description: This data is in support of the paper "Impact of Cognitive Biases on Progressive Visualization", accepted to IEEE Transactions on Visualization and Computer Graphics
DOI: 10.6084/m9.figshare.13550372.v2
title: dataset 1 test

description: Test portion of neVANiLLa dataset 1<br>
DOI: 10.6084/m9.figshare.13550372.v3
title: dataset 1 test

description: Test portion of neVANiLLa dataset 1<br>
DOI: 10.6084/m9.figshare.13550372
title: Dataset 1 test

description: Test portion of neVANiLLa Dataset<sub>1</sub><br>
DOI: 10.6084/m9.figshare.13550372.v5
title: Dataset 1 test

description: Test portion of neVANiLLa Dataset<sub>1</sub><br>
DOI: 10.6084/m9.figshare.13550372.v4
title: dataset 1 test

description: Test portion of neVANiLLa dataset 1<br>
DOI: 10.6084/m9.figshare.13550387
title: Dataset 1 train

description: Train portion of neVANiLLa dataset<sub>1</sub>
DOI: 10.6084/m9.figshare.13550387.v2
title: Dataset 1 train

description: Train portion of neVANiLLa dataset<sub>1</sub>
DOI: 10.6084/m9.figshare.13550387.v1
title: dataset 1 train

description: Train portion of neVANiLLa dataset 1
DOI: 10.6084/m9.figshare.13550390
title: Dataset 2 test

description: Test portion of neVANiLLa Dataset<sub>2</sub>
DOI: 10.6084/m9.figshare.13550390.v2
title: Dataset 2 test

description: Test portion of neVANiLLa Dataset<sub>2</sub>
DOI: 10.6084/m9.figshare.13550390.v1
title: dataset 2 test

description: Test portion of neVANiLLa dataset 2
DOI: 10.6084/m9.figshare.13550393
title: Dataset 2 train

description: Train portion of neVANiLLa Dataset<sub>2</sub><br>
DOI: 10.6084/m9.figshare.13550393.v2
title: Dataset 2 train

description: Train portion of neVANiLLa Dataset<sub>2</sub><br>
DOI: 10.6084/m9.figshare.13550393.v1
title: dataset 2 train

description: Train portion of neVANiLLa dataset 2<br>
DOI: 10.5281/zenodo.4426620
title: Voxel Carving Based 3D Reconstruction of Sorghum

description: <strong>Dataset generated in the following paper:</strong> Gaillard, M., Miao, C., Schnable, J. C., & Benes, B. (2020). Voxel carving-based 3D reconstruction of sorghum identifies genetic determinants of light interception efficiency. Plant Direct, 4(10), e00255. https://doi.org/10.1002/pld3.255
DOI: 10.5281/zenodo.4426619
title: Voxel Carving Based 3D Reconstruction of Sorghum

description: <strong>Dataset generated in the following paper:</strong> Gaillard, M., Miao, C., Schnable, J. C., & Benes, B. (2020). Voxel carving-based 3D reconstruction of sorghum identifies genetic determinants of light interception efficiency. Plant Direct, 4(10), e00255. https://doi.org/10.1002/pld3.255
DOI: 10.17632/9xsnhvt8vf.1
title: Data for: Multiscale Thermal-Hydraulic Methods for Salt-Cooled Pebble Bed Reactors

description: Verification data for the heat source decomposition method against PB-FHR pebbles.
DOI: 10.17632/bcf9pj7zz7.1
title: Data for: Multiscale Thermal-Hydraulic Methods for Salt-Cooled Pebble Bed Reactors

description: Python script containing all multiscale pebble data for the fully-resolved verification of the heat source decomposition method against the PB-FHR pebble with variety of packing fractions.
DOI: 10.6084/m9.figshare.13550405.v1
title: Splicing junctions of human samples

description: The innate immune system represents the first line of defense against invading organisms. Here, we conducted both computional and experimental assays to identify and characterize novel and key innate immune protein-coding genes, long noncoding RNAs, as well as splicing junctions in human<br>
DOI: 10.6084/m9.figshare.13550405
title: Splicing junctions of human samples

description: The innate immune system represents the first line of defense against invading organisms. Here, we conducted both computional and experimental assays to identify and characterize novel and key innate immune protein-coding genes, long noncoding RNAs, as well as splicing junctions in human<br>
DOI: 10.34740/kaggle/dsv/1830871
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.13550423
title: Splicing junctions of mouse samples

description: The innate immune system represents the first line of defense against invading organisms. Here, we conducted both computional and experimental assays to identify and characterize novel and key innate immune protein-coding genes, long noncoding RNAs, as well as splicing junctions in mouse.<br>
DOI: 10.6084/m9.figshare.13550423.v1
title: Splicing junctions of mouse samples

description: The innate immune system represents the first line of defense against invading organisms. Here, we conducted both computional and experimental assays to identify and characterize novel and key innate immune protein-coding genes, long noncoding RNAs, as well as splicing junctions in mouse.<br>
DOI: 10.6084/m9.figshare.13550429
title: Novel long noncoding RNAs of human and mouse

description: The innate immune system represents the first line of defense against invading organisms. Here, we conducted both computional and experimental assays to identify and characterize novel and key innate immune protein-coding genes, long noncoding RNAs, as well as splicing junctions in huaman and mouse.
DOI: 10.6084/m9.figshare.13550429.v1
title: Novel long noncoding RNAs of human and mouse

description: The innate immune system represents the first line of defense against invading organisms. Here, we conducted both computional and experimental assays to identify and characterize novel and key innate immune protein-coding genes, long noncoding RNAs, as well as splicing junctions in huaman and mouse.
DOI: 10.21227/f908-cy10
title: Node-Breaker Model of the IEEE 300-Bus System

description: Conventianlly, state estimation is run on reduced bus-branch (BB) network models. On the other hand, when detailed node-breaker (NB) models are used, no network reduction is necessary. This allows joint estimation of system states and network topology. For testing SE applications using NB models, an expanded version of the IEEE 300-bus system is created. The following changes are made to the original BB model to generate the NB model:The original system information (branch impedance values, loads and generators) in the IEEE 300-bus system is retained.All transmission buses are treated as substations with either double-bus-double-breaker, ring-bus, or breaker-and-a-half configurations, based on the number of incident lines.To terminate both ends of each regular branch between two circuit breakers, 1186 zero-impedance branches are added in the new NB model. The flows through these branches constitute the new SD-flow states.With the addition of SDs, the node count goes up from 300 in the BB model to 1233 in the NB model. All new nodes are given a unique four digit bus number.
DOI: 10.21227/kcnz-gj47
title: Node-Breaker Model of the IEEE 300-Bus System

description: Conventianlly, state estimation is run on reduced bus-branch (BB) network models. On the other hand, when detailed node-breaker (NB) models are used, no network reduction is necessary. This allows joint estimation of system states and network topology. For testing SE applications using NB models, an expanded version of the IEEE 300-bus system is created. The following changes are made to the original BB model to generate the NB model:The original system information (branch impedance values, loads and generators) in the IEEE 300-bus system is retained.All transmission buses are treated as substations with either double-bus-double-breaker, ring-bus, or breaker-and-a-half configurations, based on the number of incident lines.To terminate both ends of each regular branch between two circuit breakers, 1186 zero-impedance branches are added in the new NB model. The flows through these branches constitute the new SD-flow states.With the addition of SDs, the node count goes up from 300 in the BB model to 1233 in the NB model. All new nodes are given a unique four digit bus number.
DOI: 10.21227/vc45-vw72
title: Node-Breaker Model of the IEEE 300-Bus System

description: Conventianlly, state estimation is run on reduced bus-branch (BB) network models. On the other hand, when detailed node-breaker (NB) models are used, no network reduction is necessary. This allows joint estimation of system states and network topology. For testing SE applications using NB models, an expanded version of the IEEE 300-bus system is created. The following changes are made to the original BB model to generate the NB model:The original system information (branch impedance values, loads and generators) in the IEEE 300-bus system is retained.All transmission buses are treated as substations with either double-bus-double-breaker, ring-bus, or breaker-and-a-half configurations, based on the number of incident lines.To terminate both ends of each regular branch between two circuit breakers, 1186 zero-impedance branches are added in the new NB model. The flows through these branches constitute the new SD-flow states.With the addition of SDs, the node count goes up from 300 in the BB model to 1233 in the NB model. All new nodes are given a unique four digit bus number.
DOI: 10.34740/kaggle/dsv/1830932
title: Vietnam SARS-CoV-2 | COVID-19 Data
DOI: 10.5281/zenodo.4429834
title: Github data for static site generators (SSG) popularity

description: Number of Github stars, forks, open issues, create and last modified dates for 30 open source static site generators (SSG), including Hugo, Jekyll and Gatsby.
description: Created at https://github.com/epogrebnyak/ssg-dataset/
DOI: 10.5281/zenodo.4429833
title: Github data for static site generators (SSG) popularity

description: Number of Github stars, forks, open issues, create and last modified dates for 30 open source static site generators (SSG), including Hugo, Jekyll and Gatsby.
description: Created at https://github.com/epogrebnyak/ssg-dataset/
DOI: 10.25345/c5tv2b
title: MassIVE MSV000086678 - Test 3 for massive upload with a very very extensive title that gives all the details to the completely uninformed reader
title: A third test for uploading stuff. The description must also be super extensive, so adding some lorem ipsum here.
DOI: 10.6084/m9.figshare.13499655
title: Data.xlsx

description: This is the data reported in the manuscript, entitled "Dissolved methane in the water column of the Saguenay Fjord", submitted to "Marine Chemistry" for consideration for publication.
DOI: 10.25345/c5q50r
title: MassIVE MSV000086679 - Syndecan liver cancer nanoHPLC-MS/MS results
title: Liver cancer was induced in mouse model organisms with diethylnitrosamine. It was found the the introduction of human Syndecan significantly slowed down the carcinogenesis. The proteomic profile of the syndecan treated livers proved to be significantly different from the non-treated samples. Details are shown in the paper.
DOI: 10.25345/c5kb7w
title: MassIVE MSV000086680 - GNPS - Mixture of 33 substrates commonly found in diet - Stability test
title: Stability test for mixture of substrates commonly found in diet (33 reference standards, 23 detected by ESI MS Positive mode). Samples resuspended in 80% MeOH:water with internal standard (1uM sulfamethazine) and analyzed by LC-MS/MS performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 um C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Impact Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source. Data was acquired in positive ion mode.
DOI: 10.5281/zenodo.4429812
title: Machine learning reactive mixing dataset-16

description: Reactive-mixing dataset-4.3 for machine learning analyses
description: For DIB article
DOI: 10.5281/zenodo.4429811
title: Machine learning reactive mixing dataset-16

description: Reactive-mixing dataset-4.3 for machine learning analyses
description: For DIB article
DOI: 10.5281/zenodo.4428959
title: m6A-TWAS weights for "Genetic Analyses Support the Contribution of mRNA N6-methyladenosine (m6A) Modification to Human Diseases Heritability"

description: We included the m6A-TWAS weights (trained using FUSION) for our manuscript "Genetic Analyses Support the Contribution of mRNA <em>N</em>6-methyladenosine (m6A) Modification to Human Diseases Heritability". This dataset is a supplement to the m6A QTL summary statistics data and imputed genotype data at https:// doi.org/10.5281/zenodo.3870952.
DOI: 10.5281/zenodo.4428958
title: m6A-TWAS weights for "Genetic Analyses Support the Contribution of mRNA N6-methyladenosine (m6A) Modification to Human Diseases Heritability"

description: We included the m6A-TWAS weights (trained using FUSION) for our manuscript "Genetic Analyses Support the Contribution of mRNA <em>N</em>6-methyladenosine (m6A) Modification to Human Diseases Heritability". This dataset is a supplement to the m6A QTL summary statistics data and imputed genotype data at https:// doi.org/10.5281/zenodo.3870952.