cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25921/z709-g365
title: National Coral Reef Monitoring Program: Water temperature data from subsurface temperature recorders (STRs) deployed at coral reef sites in the U.S. Virgin Islands

description: This collection contains water temperature data collected using subsurface temperature recorders (STRs) that aid in the monitoring of seawater temperature variability at permanent coral reef sites in the U.S. Virgin Islands as part of the ongoing NOAA National Coral Reef Monitoring Program (NCRMP). The high-accuracy temperature loggers used to gather this data are made by SeaBird Electronics (SBE). They are deployed on the reef for a period of 3 years at depths ranging from 0 to 30 meters along depth transects. When an STR is recovered, typically another STR is deployed in the same location. Raw data contains temperatures collected every 5 minutes. Temperature data are archived by region, location, depth and year recovered.

The temperature data provided here were collected from STRs deployed at existing long-term monitoring sites during NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML), Coral Reef Conservation Program (CRCP) led NCRMP missions.
DOI: 10.17632/4mxj6rpv48.2
title: Facial Profile Soft Tissue Annotations for Orthodontic Diagnosis and Classification

description: This dataset consists of 400 annotated facial soft tissue profile images curated for orthodontic research and deep learning model development. The images were annotated using the WebCeph tool, focusing on soft tissue landmarks such as the lips, nose, chin, and jawline. Additionally, the annotations include detailed skeletal and dental measurements, all validated by orthodontic specialists to ensure clinical relevance and precision.

Each CSV file includes comprehensive patient data with the following fields:

patients: Patient identifier (anonymized).
skeletal_status: General skeletal classification.
skeletal_maxilla: Skeletal condition of the maxilla.
skeletal_mandible: Skeletal condition of the mandible.
dental_status: Overall dental status of the patient.
dental_overjet: Measurement of the overjet.
dental_overbite: Measurement of the overbite.
dental_upper_incisor_inclination: Inclination of the upper incisors.
dental_lower_incisor_inclination: Inclination of the lower incisors.
dental_interincisal_angle: Angle between the upper and lower incisors.
dental_upper_incisal_display: Display of the upper incisors.
soft-tissue_upper_lip: Soft tissue condition of the upper lip.
soft-tissue_lower_lip: Soft tissue condition of the lower lip.
The dataset provides five classification categories for the soft tissue profiles: Plane, Concave, Convex, Convex-Concave, and Concave-Convex. This classification assists in understanding soft tissue structure and planning appropriate orthodontic treatments. The CSV files contain detailed annotations for each patient, enabling research into the relationships between skeletal, dental, and soft tissue characteristics.

This dataset is well-suited for developing deep learning models, such as convolutional neural networks (CNNs), to improve the accuracy and efficiency of orthodontic diagnosis and treatment planning.

Key Features:
Images: 400 high-quality profile images of patients’ facial soft tissues.
Annotations: Comprehensive skeletal, dental, and soft tissue annotations provided in CSV format, using the WebCeph tool.
Classes: Five classification categories for soft tissue profiles:

Plane
Concave
Convex
Convex-Concave
Concave-Convex

Format: Images in JPEG/PNG format, annotations in CSV format.
Validation: All annotations validated by orthodontic specialists for clinical accuracy.
Application: Orthodontic research, deep learning model development, AI-based diagnostics.
Use Case: Ideal for training machine learning models for enhanced diagnosis and treatment planning in orthodontics, focusing on the relationships between skeletal, dental, and soft tissue profiles.
Intended Audience:
This dataset is designed for researchers, data scientists, and developers working in orthodontics, artificial intelligence, and medical imaging. It offers a valuable resource for advancing research in AI-powered diagnostic tools and soft tissue analysis in orthodontics.
DOI: 10.17632/c3twk535m8.1
title: LINF_280010800

description: major surface protease gp63 | Leishmanolysin; Leishmania infantum (strain JPCM5)
DOI: 10.17632/hc64yzfyr6.2
title: Supplemental data: Variations in salivary oxytocin and eye caruncle temperature indicate valuing of environmental enrichment material in fattening pigs

description: This document provides supplemental data and respective R script to the manuscript "Variations in salivary oxytocin and eye caruncle temperature indicate valuing of environmental enrichment material in fattening pigs" submitted to the journal Applied Animal Behaviour Science on January 11, 2023.

The study reports an experimental study exploring the potential of physiological and behavioral measures to non-invasively detect valuing responses to environmental enrichment in fattening pigs. Our results illustrate that lachrymal caruncle temperature, measured by infrared thermography, salivary oxytocin, and play behavior can vary in response to short-term changes to provision of fresh straw. This study represents a step toward the development of non-invasive measures to investigate anticipation and, consequently, affective states in pigs and the progress of the study of animal emotions.

The experimental procedures were carried out in accordance with the Ministry of Food, Agriculture and Fisheries, The Danish Veterinary and Food Administration under act 474 of 15. May 2014 and executive order 2028 of 14. December 2020, and under consideration of the ARRIVE Guidelines (Du Sert et al., 2020). The study was developed as part of project PIGWEB funded by the European Union’s Horizon 2020 research and innovation program under grant agreement No. 101004770.
DOI: 10.17632/hc64yzfyr6.1
title: Supplemental data: Variations in salivary oxytocin, eye caruncle temperature and behavior indicate anticipation and valuing of environmental enrichment material in fattening pigs

description: This document provides supplemental data and respective R script to the manuscript "Variations in salivary oxytocin, eye caruncle temperature and behavior indicate anticipation and valuing of environmental enrichment material in fattening pigs" submitted to the journal Physiology and Behavior on July 04, 2023.

The study reports an experimental study exploring the potential of physiological and behavioral measures to non-invasively detect anticipatory responses to environmental enrichment in fattening pigs. Our results illustrate that lachrymal caruncle temperature, measured by infrared thermography, salivary oxytocin, and play behavior can vary in response to short-term changes in anticipation. This study represents a step toward the development of non-invasive measures to investigate anticipation and, consequently, affective states in pigs and the progress of the study of animal emotions.

The experimental procedures were carried out in accordance with the Ministry of Food, Agriculture and Fisheries, The Danish Veterinary and Food Administration under act 474 of 15. May 2014 and executive order 2028 of 14. December 2020, and under consideration of the ARRIVE Guidelines (Du Sert et al., 2020). The study was developed as part of project PIGWEB funded by the European Union’s Horizon 2020 research and innovation program under grant agreement No. 101004770.
DOI: 10.17632/3wd8kcs5mg.1
title: LINF_280009600

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/kpbmvxh88m.1
title: Dataset describing the amino acid catabolism of Thermoanaerobacter pseudethanolicus

description: The dataset depicts the catabolism of branched-chain amino acids Thermoanaerobacter pseudethanolicus in the presence of thiosulfate under different culture conditions
DOI: 10.17632/y9wwtjy74h.1
title: YDP-iScience-D-23-01615R1-Raw uncropped immunoblot gels: TM4SF5-mediated abnormal food-intake behavior and apelin expression facilitate non-alcoholic fatty liver disease features

description: This file includes the uncropped immunoblot gel images for the manuscript by YDP in iScience (D-23-01615R1, 2023) titled as TM4SF5-mediated abnormal food-intake behavior and apelin expression facilitate non-alcoholic fatty liver disease features.
DOI: 10.57754/fdat.aqged-7yd76
title: Incrementality in the processing of adverbial order variations (SPR_internextern)

description: Self-paced Reading.
Compares order effects on reading times for event external and event internal adverbials.
Compares order effects on reading times for a: 2 adverbials modifying the proposition. 1 adverbial modifying proposition/ 1 mod. event.
description: Research carried out in work package B08 of the SFB 833.
DOI: 10.17632/82kdp4jmp6.1
title: LINF_280014400

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/b9s4j5m54c.1
title: LINF_280011900

description: Ankyrin repeats-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/g4xcczgnbs.1
title: LINF_280012600

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vznj25b2fd.1
title: MRE Dataset

description: This is the dynamic compression dataset of magnetorheological elastomer tested at Department of Mechanical Engineering, Universiti Tenaga Nasional, Selangor, Malaysia.
DOI: 10.17632/z3vc3kyxj7.1
title: Apatite Partitioning in Intermediate Melts

description: Apatite is an important accessory phase in igneous and metamorphic rocks and may act as an important reservoir for rare earth elements, phosphorus, and other elements in the lower crust. This study presents new trace element partition coefficients between apatite and intermediate melts at 1 GPa. Our results show that the rare earth elements, Y, and Sr partition strongly into the crystal structure of apatite (ap/meltD values 12.61, 1.32, 18.49 for Y, Sr and Gd, respectively), while large ion lithophile elements and high field strength elements are strongly incompatible (ap/meltD values between 0.03 and 0.48). These results have important implications for geochemical models which rely on the interpretation of rare earth element ratios in melts, such as the amphibole sponge model, as the high partition coefficients between apatite and melts can complicate the signature often attributed to amphibole fractionation. The fractionation of small (&lt;5% modally) amounts of apatite significantly alter the Dy/Yb and Dy/Dy* trajectory of a differentiating melt, with fractionation of 10% apatite causing depletion of Dy/Yb in a melt after 80% crystallization.
DOI: 10.17632/y82s7pffs4.1
title: The ideal strategy of carbon-neutral for park landscape design: a proposal for a rapid detection method

description: The concept of "Carbon Neutrality" has gained widespread recognition lately. Urban green spaces offer valuable opportunities to provide natural public areas and mitigate carbon emissions, especially in high-carbon-emission cities. The primary objective of this study is to investigate the carbon footprint, resilience levels, and optimal landscape area ratios of various parks. Additionally, it explores the relationships between Landscape Element Proportions (LEP), the Normalized Difference Vegetation Index (NDVI), Resilience Indicators (RI), and the carbon reduction benefits associated with carbon neutrality (CN). Six parks were assessed for resilience, NDVI, LEP, and CN values, with Pearson correlation analysis conducted. The results revealed that parks with or without waterbodies exhibited ideal LEP area ratios of 6.5:2:1.5 (Softscape: Waterbody: Hardscape) and 8.3:1.7 (Softscape: Hardscape), respectively. Enhanced Softscape and reduced Hardscape proportions in parks correlated with increased NDVI and CN, contributing to carbon neutrality. NDVI exhibited a positive correlation with Softscape percentage and a negative correlation with Hardscape percentage. Conversely, CN demonstrated a negative correlation with Hardscape percentage and a positive correlation with Softscape percentage. Specific recommendations were proposed, suggesting Softscape should constitute over 65%, and Hardscape should be under 15% in parks with water bodies. Waterless parks are advised to maintain a Softscape ratio exceeding 83% and a Hardscape ratio below 17%. Future park design, maintenance, and improvements should incorporate these findings for carbon neutrality. Finally, the study extended to assess the LEP of 22 additional parks, proposing enhancement strategies and validating the suitability of the ideal LEP area ratio.
DOI: 10.17632/y82s7pffs4.2
title: The Ideal Strategy of Carbon-Neutral for Park Landscape Design: A Proposal for a Rapid Detection Method

description: The primary objective of this study is to investigate the carbon footprint, resilience levels, and optimal landscape area ratios of various parks. Additionally, it explores the relationships between landscape element proportions (LEP), the normalized difference vegetation index (NDVI), resilience indicators (RI), and the carbon reduction benefits associated with carbon neutrality (CN). Six parks were assessed for resilience, NDVI, LEP, and CN values, with Pearson correlation analysis conducted. The results revealed that parks with or without waterbodies exhibited ideal LEP area ratios of 6.5:2:1.5 (Softscape:Waterbody:Hardscape) and 8.3:1.7 (Softscape:Hardscape), respectively. Enhanced Softscape and reduced Hardscape proportions in parks correlated with increased NDVI and CN. NDVI exhibited a positive correlation with Softscape percentage and a negative correlation with Hardscape percentage. Conversely, CN demonstrated a negative correlation with Hardscape percentage and a positive correlation with Softscape percentage. Suggesting Softscape should constitute over 65%, and Hardscape should be under 15% in parks with water bodies. Waterless parks are advised to maintain a Softscape ratio exceeding 83% and a Hardscape ratio below 17%. Finally, the study extended to assess the LEP of 22 additional parks, validating the suitability of the ideal LEP area ratio.
DOI: 10.17632/8fh7c9sryn.1
title: LDHU3_17.0460

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/79x52t9bmh.1
title: LDHU3_17.0440

description: Tetratricopeptide repeat (TPR)-containing protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/47fxtr42hj.2
title: Sedentary predators in disturbed habitats

description: Habitat disturbance can significantly affect the ecological dynamics and behaviour of organisms, particularly those that are sedentary. This study investigates the responses of two antlion larvae to a disturbance, namely stones of different mass dropped into the pit-fall traps.
DOI: 10.17632/47fxtr42hj.1
title: Sedentary predators in disturbed habitats

description: Habitat disturbance can significantly affect the ecological dynamics and behaviour of organisms, particularly those that are sedentary. This study investigates the responses of two antlion larvae to a disturbance, namely stones of different mass dropped into the pit-fall traps.
DOI: 10.17632/8n3h84zf4g.1
title: LINF_280017000

description: Amastin surface glycoprotein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/sdtybytxyv.1
title: Vulnerability of Tidal Flats to Microplastics in La Parguera, Puerto Rico

description: To assess microplastics (MPs, &lt;5 mm) distribution within tidal flats we studied four sites in southwest Puerto Rico with varying mangrove densities and anthropogenic influences. We characterized MPs from surface sediments along a transect at each tidal flat. Total microplastics (MPs) collected by site and size and MPs per kg of sediment.
DOI: 10.15468/dl.ucdsr5
title: Occurrence Download

description: A dataset containing 15455 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Laboratorio de Entomología y Control de Plagas del Instituto Cavanilles de Biodiversidad y Biología Evolutiva de la Universidad de Valencia: ENV"
 ]
}

 The dataset includes 15455 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004297-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/vnpvt8n5gv.1
title: LINF_280018100

description: Calcium-dependent phosphotriesterase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/b29wyhhr3t.1
title: Pleistocene Subaerial and Holocene marine mud deposits on the inner continental shelf of the Sao Paulo Bight (Southeast Brazil)

description: Sedimentological data of the inner shelf of Sao Paulo
DOI: 10.17632/9gh2sdkcjs.1
title: LDHU3_17.0500

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/n7t32ftzmx.1
title: LDHU3_17.0480

description: Peptidase T - metallo-peptidase - ClanMH - family M20B; Leishmania donovani (HU3 strain)
DOI: 10.17632/45vf5k5dfv.1
title: Data associated with "Substrate specificity of a methyltransferase involved in the biosynthesis of the lantibiotic cacaoidin" Biochemistry 2024

description: All mass spectrometric data associated with the study
DOI: 10.17632/hdhk6cttdm.1
title: LINF_280018300

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/sv94wzsgzc.1
title: Mathematics Discourse Tier 1 and 2 Analysis Data

description: Quantitative data for Mathematics Discourse in Secondary Teacher Candidates’ Lessons: A Mixed Methods Analysis.
DOI: 10.17632/thzxsnb9x3.1
title: LDHU3_17.0580

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/b7fdyyx3nr.1
title: Mobilizing Global Change Science for Effective Governance Action in the Laguna San Rafael y el Guayaneco Biosphere Reserve

description: Mobilizing sustainability science in the Laguna San Rafael y el Guayaneco Biosphere Reserve (LSRGBR), located in Chilean Patagonia, is important to strengthen collaborative governance and contribute to sustainable development. Through a systematized literature review enhanced with a place-based geographic component, the study identified trends in LSRGBR research related to anthropogenic direct drivers of ecosystem change (climate change, habitat change, invasive species, overexploitation, and pollution), for the 2000 - 2021 timeframe. Emphasizing the role of knowledge-action boundary objects, the research examined how these elements facilitate collaboration between science and practice. While climate change research was prevalent, all global change drivers were found to have relevant applications across the reserve zones. Climate and habitat change studies were more common in the nucleus zone, while other drivers were often explored in buffer and transition zones. Results inform local actors and the LSRGBR management committee of ongoing research and gaps in knowledge to establish action plans. This research serves as a roadmap for mobilizing scientific knowledge to support conservation efforts and sustainable development strategies in the LSRGBR and beyond.
DOI: 10.17632/3xd9n945v8.1
title: 'Hass' Avocado Ripening Photographic Dataset

description: This dataset consists of 14,710 labeled photographs of Hass avocados (Persea Americana Mill. cv Hass), resized to 800 x 800 pixels and saved in the .jpg format, designed to facilitate the development of deep learning models for predicting ripening stages and estimating shelf-life.

A total of 478 Hass avocados were acquired three days post-harvest and categorized into three storage groups: T10 at 10 ºC with 85% relative humidity (RH); T20 at 20 ºC with 85% RH; and Tamb under ambient conditions.

The ripening process of these avocados was documented through daily photographs (2 of each sample of opposite sides), each linked to a detailed Ripening Index with five stages: 
1 - Underripe;
2 - Breaking;
3 - Ripe (First Stage);
4 - Ripe (Second Stage);
5 - Overripe.

The fourth stage marked the end of the avocados' shelf-life, with any sample classified as stage 5 considered beyond its prime. Time stamps on each photograph enable the tracking of the duration from any photograph, to the point each avocado reached the end of its shelf-life.

Additionally, an Excel spreadsheet accompanies the dataset, listing all photograph filenames, their corresponding sample number, storage group, classification according to the 5-stage Ripening Index, the day the photograph was taken relative to the start of the experiment, and the side of the fruit photographed (a or b).

Please cite the original contributors if you use it for your own work, by referring to this dataset.
DOI: 10.17632/tstnn6m75z.1
title: Supplementary material and Dataset for Complex relations between milking-induced changes in teat structures and their pre-milking dimensions in Holstein cows

description: Dataset and Supplementary File for manuscript Complex relationships between milking-induced changes in teat structures and their pre-milking dimensions in Holstein cows
Abstract
Over the past decades, multiple studies have investigated the relation of teat morphology to udder health and milkability. Nevertheless, it is essential to examine how dimensions of teat structures influence each other. This study aimed to explore the relations between the dimensions of teat structures and their short-term reaction to milking to find the ideal dimensions of teat structures for optimal response to milking. Teat structures (teat length, canal length, thickness at barrel and apex, wall, and cistern width) were measured by ultrasonography before and after milking for 38 Holstein cows at the beginning, middle, and end of lactation. We found that milking-induced changes in teat structures significantly depended on their pre-milking size, probably because their dimensions allowed for certain fluid mechanics inside the teat after the forces were applied within the liner of specific dimensions. Furthermore, we observed that some teat structures and their changes were interconnected, and some did not affect each other. For example, changes in the barrel and cistern were affected by all structures, while the canal and apex did not influence each other. We would suggest that the optimal reaction to milking was found for teats of medium length (43.5 - 52.5 mm), of medium thickness at the barrel (24.2 - 26.5 mm) and the apex (21 - 22.5 mm), with teat canals of medium length (11.8 - 14 mm), but with wider cisterns (&gt;11mm) and thinner walls (&lt;7 mm). The results of this study might help to improve research in the area of milking-induced changes in teat morphology. Furthermore, our findings could help understand potential health risks to animals and be useful for the development of milking equipment.
Key Words: teat canal; teat cistern; teat morphology; teat wall; ultrasonography