cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14437295.v1
title: Additional file 1 of Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation

description: Additional file 1: Genes displaying significantly altered expression under zinc supplementation. An annotated list of genes called significantly regulated with more than 1.8-fold change, compared to control, and FDR = 0.1 (N = 4 or 5) at one or more time points between 8 hours and 14 days. The total number of samples analysed by microarray was 50. Annotation provided was determined by mapping the reporter sequences using megablast allowing 2 bp mismatches to Ensembl (Zv5), Refseq and Genebank. Genebank matches were used to retrieve the relevant Unigene Cluster ID and gene names (as provide in the table) and used to determine the associated human orthologues for which the unigene ID and gene symbol is also provided. The fold change in expression at each time point is also provided expressed relative to time match control. (XLS 130 KB)
DOI: 10.6084/m9.figshare.14437298
title: Additional file 2 of Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation

description: Additional file 2: Interactive Direct Interaction Network representing the molecular interactions between zinc, copper, iron, calcium and proteins encoded by transcripts changed by zinc supplementation. Mini web-site containing index.html and hyperlinked pages in subdirectory describing a Direct Interaction Network automatically generated based on curated interactions contained within the proprietary PathwayArchitect database. Ovals represent proteins and the circles symbolize metal ions. Objects are coloured by their abundance in zebrafish at the time-point they were significantly different from the control is a scale from -4 fold (dark green) to +4 fold (dark red). Where significant differences were found at more than one time-point, the colour overlay shows expression at the first instance. Dark blue squares denote 'binding', and light blue squares 'expression'; green squares stand for 'regulation', green diamonds for 'metabolism', and green circles for 'promoter binding'. Arrow heads indicate directionality of the interaction where annotated. All nodes and edges can be further interrogated by selecting the relative area of the image. (ZIP 2 MB)
DOI: 10.6084/m9.figshare.14437298.v1
title: Additional file 2 of Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation

description: Additional file 2: Interactive Direct Interaction Network representing the molecular interactions between zinc, copper, iron, calcium and proteins encoded by transcripts changed by zinc supplementation. Mini web-site containing index.html and hyperlinked pages in subdirectory describing a Direct Interaction Network automatically generated based on curated interactions contained within the proprietary PathwayArchitect database. Ovals represent proteins and the circles symbolize metal ions. Objects are coloured by their abundance in zebrafish at the time-point they were significantly different from the control is a scale from -4 fold (dark green) to +4 fold (dark red). Where significant differences were found at more than one time-point, the colour overlay shows expression at the first instance. Dark blue squares denote 'binding', and light blue squares 'expression'; green squares stand for 'regulation', green diamonds for 'metabolism', and green circles for 'promoter binding'. Arrow heads indicate directionality of the interaction where annotated. All nodes and edges can be further interrogated by selecting the relative area of the image. (ZIP 2 MB)
DOI: 10.6084/m9.figshare.14437319.v2
title: Additional file of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses

description: Additional file of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses
DOI: 10.6084/m9.figshare.14437319.v1
title: Additional file of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses

description: Additional file of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses
DOI: 10.6084/m9.figshare.14437319.v3
title: Additional file of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses

description: Additional file of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses
DOI: 10.6084/m9.figshare.14437322
title: Additional file 1 of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses

description: Additional file 1: Quantitative association test results for best race distance. Unadjusted and FDR corrected P-values are given. (XLS 7 MB)
DOI: 10.6084/m9.figshare.14437322.v1
title: Additional file 1 of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses

description: Additional file 1: Quantitative association test results for best race distance. Unadjusted and FDR corrected P-values are given. (XLS 7 MB)
DOI: 10.17632/ykvpjk42jw.3
title: Azohydromonas lata chemostat culture and metabolic model

description: A complementary experimental and modeling approach was used to analyze the production of PHB in chemostat cultures of A. lata DSM1123. The counterintuitive PHB accumulation under glucose-limited conditions, a situation where only biomass production should be observed, can be explained as the result of two internal metabolic constraints: a limited flow through the Krebs cycle and a maximum metabolically active protein. Given the predictive power and simplicity of the model, it may be used for assessing the impact of expressing synthetic pathways for target metabolites production, where the new enzymes must compete for the total protein pool.
DOI: 10.6084/m9.figshare.14437325
title: Additional file 2 of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses

description: Additional file 2: PCR and sequencing primers for re-sequencing MSTN flanking regions. Primers were designed to cover ~2 kb of the 3' UTR and ~2 kb of the 5' UTR of the MSTN gene. (XLS 19 KB)
DOI: 10.6084/m9.figshare.14437325.v1
title: Additional file 2 of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses

description: Additional file 2: PCR and sequencing primers for re-sequencing MSTN flanking regions. Primers were designed to cover ~2 kb of the 3' UTR and ~2 kb of the 5' UTR of the MSTN gene. (XLS 19 KB)
DOI: 10.6084/m9.figshare.14437328
title: Additional file 3 of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses

description: Additional file 3: Sequence and structural variation in the coding, intronic and flanking sequences of the equine MSTN gene. Sequences are provided for the + strand. (XLS 24 KB)
DOI: 10.6084/m9.figshare.14437328.v1
title: Additional file 3 of A genome-wide SNP-association study confirms a sequence variant (g.66493737C&gt;T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses

description: Additional file 3: Sequence and structural variation in the coding, intronic and flanking sequences of the equine MSTN gene. Sequences are provided for the + strand. (XLS 24 KB)
DOI: 10.17632/4hg3zdtns7.1
title: Correction of alar rim protrusion after direct closure of small alar defects

description: Figure 1. Patient 1: After direct closure of the defect perpendicular to the alar free margin, an alar downward protrusion is created (A). An area of skin with the same length and width as the protrusion is excised parallel to the alar rim at the inferior end of the suture (B). This secondary defect is then sutured, pulling upward the alar rim and repairing the protrusion (C, D). Figure 2. Patient 2: After direct closure of the defect perpendicular to the alar free margin, an alar downward protrusion is created (A, B). An area of skin with the same length and width as the protrusion is excised parallel to the alar rim at the inferior end of the suture. This secondary defect is then sutured, pulling upward the alar rim and repairing the protrusion (C, D).
DOI: 10.17632/nzpsr89x5f.1
title: Convolution neural network for classifying TEM images of soot

description: An ONNX file - associated with Sipkens et al. (https://doi.org/10.1016/j.powtec.2021.04.026) - containing a trained convolution neural network to separate soot aggregates from the background in TEM images. The network was trained on images collected at the University of British Columbia for soot collected from a laboratory-scale flare, a marine engine, and an internal combustion engine. Please see the associated manuscript for more information on architecture and validation.
DOI: 10.6084/m9.figshare.14437391.v2
title: Additional file of Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion

description: Additional file of Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion
DOI: 10.6084/m9.figshare.14437391.v1
title: Additional file of Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion

description: Additional file of Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion
DOI: 10.17632/3fcg7rrgst.1
title: CNM Data

description: The research aims to identify the policies developed by the Brazilian municipalities in relation to the covid pandemic 19.
DOI: 10.6084/m9.figshare.14437397
title: Additional file 1 of Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion

description: Additional file 1: Table S1 - Genes called regulated (&gt;1.8-fold change, FDR = 0.1) in gills of zebrafish subjected to zinc depletion. An annotated list of genes called significantly regulated with more than 1.8-fold change, compared to control, and FDR = 0.1 (N = 4 or 5) at one or more time points between 8 hours and 14 days. Annotation provided was determined by mapping the reporter sequences using megablast allowing 2 bp mismatches to Ensembl (Zv5), Refseq and Genebank. Genebank matches were used to retrieve the relevant Unigene Cluster ID and gene names (as provide in the table) and used to determine the associated human orthologues for which the unigene ID and gene symbol is also provided. The fold change in expression at each time point is also provided expressed relative to time match control. (XLS 118 KB)
DOI: 10.6084/m9.figshare.14437400
title: Additional file 2 of Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion

description: Additional file 2: Figure S1 - Interactive Direct Interaction Network of responses to zinc depletion. Mini web-site containing index.html and hyperlinked pages in subdirectory. The web site is an interactive version of Figure 6A containing curated interactions between regulated genes and respective proteins. Legend: Molecular interactions between zinc and proteins encoded by genes changed under zinc depletion. A Direct Interaction Network was created based on curated interactions contained within the PathwayArchitect database and provided through hyperlinks. Red ovals represent proteins and the blue circle symbolizes Zn(II). Dark blue squares denote 'binding', and light blue squares 'expression'; green squares stand for 'regulation', green diamonds for 'metabolism', and green circles for 'promoter binding'. Arrow heads indicate directionality of the interaction where annotated. (ZIP 783 KB)
DOI: 10.6084/m9.figshare.14437400.v1
title: Additional file 2 of Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion

description: Additional file 2: Figure S1 - Interactive Direct Interaction Network of responses to zinc depletion. Mini web-site containing index.html and hyperlinked pages in subdirectory. The web site is an interactive version of Figure 6A containing curated interactions between regulated genes and respective proteins. Legend: Molecular interactions between zinc and proteins encoded by genes changed under zinc depletion. A Direct Interaction Network was created based on curated interactions contained within the PathwayArchitect database and provided through hyperlinks. Red ovals represent proteins and the blue circle symbolizes Zn(II). Dark blue squares denote 'binding', and light blue squares 'expression'; green squares stand for 'regulation', green diamonds for 'metabolism', and green circles for 'promoter binding'. Arrow heads indicate directionality of the interaction where annotated. (ZIP 783 KB)
DOI: 10.6084/m9.figshare.14437397.v1
title: Additional file 1 of Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion

description: Additional file 1: Table S1 - Genes called regulated (&gt;1.8-fold change, FDR = 0.1) in gills of zebrafish subjected to zinc depletion. An annotated list of genes called significantly regulated with more than 1.8-fold change, compared to control, and FDR = 0.1 (N = 4 or 5) at one or more time points between 8 hours and 14 days. Annotation provided was determined by mapping the reporter sequences using megablast allowing 2 bp mismatches to Ensembl (Zv5), Refseq and Genebank. Genebank matches were used to retrieve the relevant Unigene Cluster ID and gene names (as provide in the table) and used to determine the associated human orthologues for which the unigene ID and gene symbol is also provided. The fold change in expression at each time point is also provided expressed relative to time match control. (XLS 118 KB)
DOI: 10.17632/vmjnt2dyf2.2
title: Internationalization and methodology

description: Database with the transcript of 26 interviews carried out from 12/09/2017 to 11/16/2017, about the incentive policies for the internationalization of research. The interviews were conducted together with the most relevant researchers in the ADI (Information Administration) area, divided into 4 groups, considering their experience, international insertion, leadership and position as coordinator of a master's and doctoral program in Administration. The geographical distribution of the interviewees was also considered, thus seeking to cover realities in different regions of the country. 26 researchers participated.
DOI: 10.6084/m9.figshare.14437448.v5
title: Additional file of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein
DOI: 10.6084/m9.figshare.14437448.v4
title: Additional file of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein
DOI: 10.6084/m9.figshare.14437448.v6
title: Additional file of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein
DOI: 10.6084/m9.figshare.14437448.v7
title: Additional file of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein
DOI: 10.6084/m9.figshare.14437448.v8
title: Additional file of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein
DOI: 10.17632/gb5hhjkygd.1
title: Benckmark inctances of the disjunctively constrained knapsack problem (DCKP)

description: This dataset includes the 6340 benchmark instances of the disjunctively constrained knapsack problem (DCKP). The first set I of 100 instances was introduced in [1] and [2]. The second set II of 6240 instances was introduced in [3] and expanded in [4]. We would like to thank these authors and co-authors for sharing the instances of the DCKP. [1] M. Hifi, M. Michrafy, A reactive local search-based algorithm for the disjunctively constrained knapsack problem, Journal of the Operational Research Society 57 (6) (2006) 718-726. [2] Z. Quan, L. Wu, Cooperative parallel adaptive neighbourhood search for the disjunctively constrained knapsack problem, Engineering Optimization 49 (9) 636 (2017) 1541-1557. [3] A. Bettinelli, V. Cacchiani, E. Malaguti, A branch-and-bound algorithm for the knapsack problem with conflict graph, INFORMS Journal on Computing 29 (3) (2017) 457-473. [4] S. Coniglio, F. Furini, P. San Segundo, A new combinatorial branch-and-bound algorithm for the knapsack problem with conflicts, European Journal of Operational Research 289 (2) (2021) 435-455.
DOI: 10.6084/m9.figshare.14437460
title: Additional file 1 of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file 1: Supplemental Table 1. Genes with more than 1.4 fold expression differences between the two mouse strains (+: higher expressed in DBA/2J vs C57BL/6J and -: lower expressed in DBA/2J vs C57BL/6J). (XLS 94 KB)
DOI: 10.6084/m9.figshare.14437460.v1
title: Additional file 1 of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file 1: Supplemental Table 1. Genes with more than 1.4 fold expression differences between the two mouse strains (+: higher expressed in DBA/2J vs C57BL/6J and -: lower expressed in DBA/2J vs C57BL/6J). (XLS 94 KB)
DOI: 10.6084/m9.figshare.14437463
title: Additional file 2 of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file 2: Supplemental Table 2. Genes that are more than 1.4 fold up- or down-regulated 4 h after stress in C57BL/6J. (XLS 30 KB)
DOI: 10.6084/m9.figshare.14437463.v1
title: Additional file 2 of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file 2: Supplemental Table 2. Genes that are more than 1.4 fold up- or down-regulated 4 h after stress in C57BL/6J. (XLS 30 KB)
DOI: 10.6084/m9.figshare.14437466
title: Additional file 3 of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file 3: Supplementary Table 3. Genes that are more than 1.4 fold up- or down-regulated 8 h after stress in C57BL/6J. (XLS 25 KB)
DOI: 10.6084/m9.figshare.14437466.v1
title: Additional file 3 of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file 3: Supplementary Table 3. Genes that are more than 1.4 fold up- or down-regulated 8 h after stress in C57BL/6J. (XLS 25 KB)
DOI: 10.17632/ptrrxtn689.1
title: Propranolol for the treatment of ulcerated infantile hemangiomas: a prospective study

description: Supplementary materials for our research article titled "Propranolol for the treatment of ulcerated infantile hemangiomas: a prospective study" include: Supplementary Table 1, Supplementary Figure 1-3. The figures show the skin lesions caused by hemangiomas. The table provides information on summary of grade 1 and higher adverse events attributable to propranolol.
DOI: 10.6084/m9.figshare.14437469
title: Additional file 4 of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file 4: Supplementary Table 4. Genes that are more than 1.4 fold up- or down-regulated 4 h after stress in DBA/2J mice. (XLS 36 KB)
DOI: 10.6084/m9.figshare.14437469.v1
title: Additional file 4 of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file 4: Supplementary Table 4. Genes that are more than 1.4 fold up- or down-regulated 4 h after stress in DBA/2J mice. (XLS 36 KB)
DOI: 10.6084/m9.figshare.14437472
title: Additional file 5 of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file 5: Supplementary Table 5. Genes that are more than 1.4 fold up- or down-regulated 8 h after stress in DBA/2J mice. (XLS 26 KB)
DOI: 10.6084/m9.figshare.14437472.v1
title: Additional file 5 of Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including Amyloid beta Precursor Protein

description: Additional file 5: Supplementary Table 5. Genes that are more than 1.4 fold up- or down-regulated 8 h after stress in DBA/2J mice. (XLS 26 KB)
DOI: 10.6084/m9.figshare.14437487.v1
title: Additional file of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin

description: Additional file of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin
DOI: 10.6084/m9.figshare.14437487.v2
title: Additional file of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin

description: Additional file of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin