cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.68g8ar
title: Occurrence Download

description: A dataset containing 1424 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella erythropus"
 ]
}

 The dataset includes 1424 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044988-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/161
title: Dataset supporting the publication 'A comparison between electromechanical and pneumatic controlled knee simulators for the investigation of wear of total knee replacements'

description: More robust pre-clinical experimental wear simulation methods are required in order to simulate a wider range of activities, observed in different patient populations such as younger more active patients, as well as fully meeting and being capable of going well beyond the existing requirements of the relevant international standards. A new six station electromechanically driven simulator (Simulation Solutions, UK) with five fully independently controlled axes of articulation for each station, capable of replicating deep knee bending as well as other adverse conditions, which can be operated in either force or displacement control with improved input kinematic following, has been developed to meet these requirements. This study investigated the wear of a fixed bearing total knee replacement using this electromechanically driven fully independent knee simulator, and compared it to previous data from a predominantly pneumatically controlled simulator in which each station was not fully independently controlled. In addition, the kinematic performance and the repeatability of the simulators have been investigated and compared to the international standard requirements. The wear rates from the electromechanical and pneumatic knee simulators were not significantly different, with wear rates of 2.6 ± 0.9 and 2.7 ± 0.9 [mm3/MC] (mean ± 95% CI, p=0.99) and 5.4 ± 1.4 and 6.7 ± 1.5 [mm3/MC] (mean ± 95% CI, p=0.54) from the electromechanical and pneumatic simulators, under intermediate levels (maximum 5 mm) and high levels (maximum 10 mm) of AP displacements respectively. However, the output kinematic profiles of the control system, which drives the motion of the simulator followed the input kinematic profiles more closely on the electromechanical simulator than the pneumatic simulator. In addition, the electromechanical simulator was capable of following kinematic and loading input cycles within the tolerances of the international standard requirements (ISO 14243-3, 2014). The new generation electromechanical knee simulator with fully independent control has the potential to be used for a much wider range of kinematic conditions, including high-flexion and other severe conditions, due to its improved capability and performance in comparison to the previously used pneumatic controlled simulators.
DOI: 10.15468/dl.dfdbgw
title: Occurrence Download

description: A dataset containing 106811 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-46.07145 -23.87266,-45.36474 -23.87266,-45.36474 -23.71322,-46.07145 -23.71322,-46.07145 -23.87266))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 106811 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044939-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1138131
title: WKDSF20 200014 Evaluation: Land at Shot Farm, Wickford

description: null
DOI: 10.15468/dl.rjngas
title: Occurrence Download

description: A dataset containing 1077 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Setipinna tenuifilis"
 ]
}

 The dataset includes 1077 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044990-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.989mjg
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melitaea athalia",
 "HasCoordinate is true",
 "Geometry POLYGON ((6.224439 46.56151, 6.224439 48.43216, 8.984551 48.43216, 8.984551 46.56151, 6.224439 46.56151))",
 "Year is greater than or equal to 2020",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 210 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044991-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qr8uf
title: Occurrence Download

description: A dataset containing 2396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.63427784928309",
 "DecimalLongitude is less than 6.63733740246749",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 2396 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044994-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r35yqf
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leiognathus brevirostris"
 ]
}

 The dataset includes 50 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044992-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zavan9
title: Occurrence Download

description: A dataset containing 280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ipomoea grandifolia"
 ]
}

 The dataset includes 280 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044996-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15493/saeon.egagasini.20250311
title: Biological trait information for 80 offshore benthic epifaunal invertebrate species from the western and southern ecoregions of South Africa

description: This dataset consists of the fuzzy coded trait data of 80 macrobenthic epifaunal invertebrate taxa collected during biannual demersal fish stock assessment trawl surveys along the western and southern ecoregion of South Africa. Traits are generally defined as the morphological, life-history and behavioural characteristics of the species present in an assemblage, and can be used to provide insight into ecological processes (e.g. predation, deposit feeding, sediment turnover, etc) which in turn reflects the ecosystem functioning (e.g. productivity, resilience, nutrient cycling, sediment stability, etc). Modalities then refer to the distinct categories or classifications each trait can be divided. For example, the trait “body form” can be divided into modalities such as round, elongated, laterally flattened, dorsally flattened, irregular, etc. In order to conduct further analysis, it was necessary to quantify the biological information collected for each of the 80 epifaunal taxa. However, because certain taxa might possess more than one modality for a particular trait, a scoring system called “fuzzy coding” was applied. Fuzzy coding is used to represent traits, characteristics, or variables that are not strictly categorical or binary. Fuzzy coding allows for a more nuanced approach by assigning partial membership of a species or taxa to multiple categories per trait, reflecting the degree to which a trait belongs to the different possible categories. Fuzzy coding scores range from 0 to 1, 0 being no affinity to a particular category, and 1 being high affinity to a particular category. Columns A-D indicates the taxonomic categories of eighty benthic epifauna (the invertebrates living on, protruding from, anchored in, or attached to benthic substrata). Columns E-AQ (row 1) represent nine traits (average captured biomass, maximum adult size, body form, adult longevity, larval development type, adult mobility, living habitat, feeding mode, attachment), which is further divided into 39 modalities in columns E-AQ (row 2). These modalities are represented by codes in E-AQ (row 3). Modalities range from three to six per trait, and scores range from 0 to 1. The nine traits, encompassing morphology, life history, and behaviour, were characterised by 3 to 6 modalities each. To build the database, trait data were sourced from a wide range of literature and resources, including the World Registry of Marine Species (WoRMS), Biological Traits Information Catalogue (BIOTIC), SeaLifeBase, the Arctic Traits Database, scientific publications, field guides, books, theses, and expert knowledge. Specific traits such as body form and body size were directly observed and measured. Certain trait information (e.g. body form and body size) was obtained and recorded directly through physical observations and measurements.
DOI: 10.57841/casdc.0005863
title: 高效气液液浓酸水解工艺装备数据集
DOI: 10.15468/dl.tk7uv2
title: Occurrence Download

description: A dataset containing 11835543 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11835543 records from 4213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044947-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/stwyp-zd364
title: Myxococcus xanthus delta-tsaP

description: Grid box YWC115
description: <strong>Tilt Series Date:</strong> 2014-09-15</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 3 days in 220 rpm shaking CTT medium at 30 degrees without antibiotics. OD600=0.8</p>
<strong>Sample Preparation:</strong> Vitrobot (MK vi) settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. Blot force 3, blot time 3 sec. Wait time 10 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-09-15-27/rawdata/</p>20140915_YWC115_30019.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        20140915_YWC115_30019_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-09-15-27/3dimage_46278/20140915_YWC115_30019_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ehpfq-m1r65
title: COS7 VPS4DN+pNLGFP

description: Cos7 cells transfected with VPS4DN (0.5 ug) and pNLGFP provirus construct (4 ug). Sample #C123
description: <strong>Tilt Series Date:</strong> 2012-03-28</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> VPS4DN construct provided by Wes Sundquist. pNLGFP construct provided by Irvin Chen, UCLA. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-28-14/3dimage_69120/</p>12mar28_pnlDN_C123_1_AT5bBT1_0006_part82_8.rec,  Reconstruction (Pixel Size 2.0 nm), 619.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        12mar28_pnlDN_C123_1_AT5bBT1_0006.mrc,  Tilt Series (Pixel Size 0.5 nm), 677.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7k09w-dfs57
title: O. tauri G1

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2009-09-30</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-68.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 12h in 30uM Propyzamide, 3h Propyzamide washout</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-09-30-36/rawdata/</p>RCC745_G1tovis_179.mrc,  Tilt Series (Pixel Size 1.26 nm), 755.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        RCC745_G1tovis_179.rec,  Reconstruction (Pixel Size 1.26 nm), 164.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-09-30-36/3dimage_12159/RCC745_G1tovis_179.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.4b9jbk
title: Occurrence Download

description: A dataset containing 5891 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alnus japonica"
 ]
}

 The dataset includes 5891 records from 217 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048278-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/hf67c-rmc96
title: E. coli (pLE7, 20 uM IPTG)

description: Cells contain WT MreB in the chromosome plus an N-terminal YFP fusion to MreB (YFP-MreB) on the plasmid pLe7. pLE7 also confers a resistance to ampicillin.
description: <strong>Tilt Series Date:</strong> 2011-11-05</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: None μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> Gift from Larry Rothfield</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown at 37 degrees celsius to OD600=0.2 then 20 uM IPTG was added for 2 hours of growth before freezing.</p>
<strong>Sample Preparation:</strong> Vitrobot plunge freeze.</p>
  mst2011-11-05-18_slicer9655.jpg: Escherichia coli .  filament mst2011-11-05-18_slicer9657.jpg: Escherichia coli .  filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2011-11-05-18/rawdata/</p>20111105_ple7_20uM0007.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        20111105_ple7_20uM0007_full.rec,  Reconstruction (Pixel Size 1.9 nm), 825.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/kqr3q-p6n39
title: MreB o/e 8hr single colony

description: Raw data files of MreB o/e 8hr single colony
description: <strong>Tilt Series Date:</strong> 2010-01-09</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR and Peach</p>
<strong>Collaborators and Roles:</strong> Cells cultured and imaged by ZL</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Single colony was picked from a PYE plate w/ 0.2 glucose and cultured o/n. The next day cells were diluted to exponential phase and induced for 8hrs w/ 0.3% xylose.</p>
<strong>Sample Preparation:</strong> R2/2 or R2/1, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-01-09-44/rawdata/</p>10jan09a_MreBoe_044.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10jan09a_MreBoe_044_part.rec,  Reconstruction (Pixel Size 2.384 nm), 524.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hpj99-a4g62
title: MT310_xyl(+)_Cd50uM(+)

description: Raw data files of MT310_xyl(+)_Cd50uM(+)
description: <strong>Tilt Series Date:</strong> 2009-06-09</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> The MT310 strain was constructed by Martin Thanbichler; cells were cultured and treated by Zhuo Li; data were collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cells were induced by xylose and treated with 50 uM CdCl2 for 20 hours.</p>
<strong>Sample Preparation:</strong> 10 nm gold. </p>
  zla2009-06-09-29_slicer8131.jpg: ring, Caulobacter crescentus zla2009-06-09-29_slicer8134.jpg: ring .  filament .  Caulobacter crescentus
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-09-29/rawdata/</p>09jun09a_Cd50uM_048.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        09jun09a_Cd50uM_048_full.rec,  Reconstruction (Pixel Size 1.9 nm), 471.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.c5w7n8
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rudbeckia hirta",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048279-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.