cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.80gb5mm08
title: Data from: Metazoan diversity in Chilean hypersaline lakes unveiled by environmental DNA

description: Saline and hypersaline wetlands are biodiversity hotspots for metazoans
 such as aquatic invertebrates and wading birds. However, the survival of
 these habitats and their biota is increasingly threatened by a combination
 of pressures from climate change and extractive processes, jeopardizing
 the long-term ecological functioning of these ecosystems. With the goal of
 improving conservation efforts through state-of-the-art survey techniques
 in hypersaline ecosystems, this study tests the use of environmental DNA
 (eDNA) methods for metazoan biomonitoring. We employed a multi-assay
 approach utilizing three genetic markers—12S rRNA, 18S rRNA, and COI —to
 analyze biodiversity in two types of environmental substrates, sediment
 and water. These samples were collected from three hypersaline lakes
 situated at high altitude in Northern Chile: Salar de Atacama (Laguna
 Puilar), Salar de Pujsa, and Salar de Tara. In addition, we compared the
 eDNA outputs with results generated from aquatic macroinvertebrate
 assessments using kick-nets to evaluate the potential for complementary
 sampling approaches. Our eDNA analyses revealed a total of 21 and 22 taxa
 across the three hypersaline lakes in sediment and water, respectively.
 Within both substrates, the highest diversity was found in Salar de Tara
 (15 taxa within sediment and 13 taxa from water). Our multi-assay design
 was able to detect a range of resident hypersaline taxa with different
 conservation status, spanning from rotifers (Encentrum) to endangered
 snails (Heleobia atacamensis), to amphipods (Hyalella) and flamingos
 (Pheonicopterus). Macroinvertebrate presence/absence data derived from
 conventional kick-net surveys further validated Salar de Tara as the most
 biodiverse system. Compared to net-based assessments, eDNA analysis
 allowed more refined taxonomic assignments for copepods and ostracods,
 while certain taxa such as Ephydridae or Hirudinea were not detected
 through molecular tests. Overall, this study provides evidence that eDNA
 is an effective tool to elucidate fine scale taxa assemblages and can
 refine conservation efforts in hypersaline lakes. Given the fast pace of
 research developments in the field of molecular ecology, eDNA hosts great
 potential to become a central actor in hypersaline bioassessments in the
 near future.
description: # Metazoan Diversity in Chilean Hypersaline Lakes Unveiled by
 Environmental DNA
 [https://doi.org/10.5061/dryad.80gb5mm08](https://doi.org/10.5061/dryad.80gb5mm08) ## Description of the data and file structure Metazoan Diversity in Chilean Hypersaline Lakes Unveiled by Environmental DNA Sample Barcode Information: `Chilean_Lakes_eDNA_Sample_Sequencing_Info.xlsx` ### Raw data files: **Single end libraries:** Chilean_Lakes_eDNA_12S_R1_001.fastq.gz Chilean_Lakes_eDNA_COI_fwh_R1_001.fastq.gz **Paired end Library:** Chilean_Lakes_eDNA_18S_R1_001.fastq.gz Chilean_Lakes_eDNA_18S_R2_001.fastq.gz
DOI: 10.15468/dl.urd62a
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelon richardsonii",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 65 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004145-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfnb8v
title: Occurrence Download

description: A dataset containing 16286 records in GBIF matching the query:
SELECT
 '498' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 51.21395264452012
 AND decimalLatitude &lt;= 56.135291543055025
 AND decimalLongitude &gt;= -107.93265282528667
 AND decimalLongitude &lt;= -93.54013222947316
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 16286 records were derived from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004135-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.r7sqv9smz
title: Latitudinal cline of ocean dependence in a diadromous fish

description: Diadromous fishes exhibit latitudinal clines of ocean dependency at inter-
 and intra-species levels. A pattern of ocean dependence at high latitudes
 and river dependence at low latitudes is explained by relative aquatic
 productivity. Such latitudinal productivity clines may induce geographical
 variations in life-history diversity within migratory phenotypes. We
 hypothesised that the lifetime ocean dependency of a regional migratory
 salmonid would display a latitudinal cline that increased at higher
 latitudes. Freshwater growth rate decreased with higher latitudes, whereas
 marine growth rate was independent of latitude. The percentage adult
 weight gain at sea was higher at higher latitudes. Relative weight gain
 [ln(ocean weight gain/freshwater weight gain)] decreased to zero at lower
 latitudes, indicating no growth benefit of going to sea at the southern
 distribution limit. These latitudinal variations in life history within
 salmonid migrants are consistent with the intra- and interspecific
 patterns and provide insight into the origin of diadromous migration, but
 raise the question of whether the current definition of anadromy may be
 insufficient to fully capture the complexity and continuum of river-ocean
 migrations.
description: # Latitudinal cline of ocean dependence in a diadromous fish
 [https://doi.org/10.5061/dryad.r7sqv9smz](https://doi.org/10.5061/dryad.r7sqv9smz) ## Description of the data and file structure The dataset of anadromous white-spotted charr *Salvelinus leucomaenis* collected from 16 rivers in north Japan contains three files; IndividualData, GrowthData, and Rcode. ## Files and variables #### File: IndividualData.csv **Description:**  IndividualData contains sample No, Date (YYYY/M/DD), Station No (St), River, Latitude (°N), Sex (f: female, m: male), Fork length (FL, mm), Body weight (BW, g), age (year), feeding or not (Vacuity, 1:feeding, 0:not feeding), otolith radius at capture (O_capture, μm),  otolith radius at smolting (O_smolt, μm), smolt_FL (mm), smolt_BW (g), smolt_age (year), marine weight gain (%) and relative weight gain. #### File: GrowthData.csv **Description:**  GrowthData contains sample No, River, Latitude (°N), Sex (f: female, m: male), smolt_age (year), age (t, year), otolith radius at age t (Ot, μm), fork length at age t (Lt, mm), body weight at age t (BWt, g), fork length at age t+1 (Lt+1, mm), body weight at age t+1 (BWt+1, g), ΔLt (mm), ΔBWt (g), habitat at age t (habitat_t), and habitat at age t+1 (habitat_t+1). #### File: Rcode\_Goto\_etal.R **Description:**  The R code used for analysis and graphing is provided. Please load and use the two CSV files, IndividualData.csv and GrowthData.csv.
DOI: 10.48530/isoarch.2025.009
title: Multi-isotope and infrared data from Late Bronze Age - Early Iron Age Herstal and Court-Saint-Etienne, Belgium

description: The dataset includes infrared, radiocarbon, carbon, oxygen, and strontium isotope data from 174 cremated human bones from two Belgian Late Bronze Age - Early Iron Age cemeteries, Herstal and Court-Saint-Etienne. Five different skeletal elements were sampled per individual whenever possible: crania, diaphyses, ribs, teeth, and the inner cortex (IC) of the otic capsule of the petrous part. This dataset highlights the added value of sampling both the IC of the petrous part and the teeth for reconstructing life histories, mobility and food consumption patterns, as well as funerary practices.
DOI: 10.48530/isoarch.2025.009.v1
title: Multi-isotope and infrared data from Late Bronze Age - Early Iron Age Herstal and Court-Saint-Etienne, Belgium

description: The dataset includes infrared, radiocarbon, carbon, oxygen, and strontium isotope data from 174 cremated human bones from two Belgian Late Bronze Age - Early Iron Age cemeteries, Herstal and Court-Saint-Etienne. Five different skeletal elements were sampled per individual whenever possible: crania, diaphyses, ribs, teeth, and the inner cortex (IC) of the otic capsule of the petrous part. This dataset highlights the added value of sampling both the IC of the petrous part and the teeth for reconstructing life histories, mobility and food consumption patterns, as well as funerary practices.
DOI: 10.5281/zenodo.18407255
title: openff-2.2.0-rc1-alkanes-lj run2
DOI: 10.5281/zenodo.18407254
title: openff-2.2.0-rc1-alkanes-lj run2
DOI: 10.5061/dryad.jh9w0vtmn
title: The summary statistics of GWAS for individual deviations of total GMV

description: To investigate genetic variants contributing to individualized brain
 aging, GWAS using estimated total GMV at 60 years old as the phenotype
 were conducted. This phenotype was derived by adding individual specific
 deviations to the population averaged total GMV, thus providing additional
 information compared to studies using only cross-sectional neuroimaging
 phenotypes. The dataset identified six independent single nucleotide
 polymorphisms (SNPs) at genome-wide significance level (P &lt; 5 ×
 10-8), most of which could be further validated by previous studies using
 population averaged brain aging phenotypes.   The file
 “UKB_TGMV60y_sumstats_DuanEtAl2023.gz” contains results from the
 genome-wide association studies (GWAS) for individual deviations of total
 gray matter volume (GMV) relative to the population average at 60 years.
  Detailed information about generation of the data, QC and GWAS
 can be found in the related manuscript.
description: ## The summary statistics of GWAS for individual deviations of total GMV,
 June 2024 Release The file “UKB_TGMV60y_sumstats_DuanEtAl2023.gz” contains
 results from the genome-wide association studies (GWAS) for individual
 deviations of total gray matter volume (GMV) relative to the population
 average at 60 years in the paper "Population clustering of structural
 brain aging and its association with brain development" by Duan et al
 in eLife
 ([https://doi.org/10.7554/eLife.94970](https://doi.org/10.7554/eLife.94970)). The data can be opened and viewed using a text editor or in programming software (e.g. Python, R, etc.). Detailed information about generation of the data, QC and GWAS can be found in the paper. #### File Description **CHROM** Chromosome code **POS** Base-pair coordinate **ID** Variant ID **A1** Reference allele **A2** Alternative allele **TEST** Test identifier **OBS_CT** Number of samples in regression **BETA** Regression coefficient (for A1 allele) **SE** Standard error of log-odds (i.e. beta) **T_STAT** t-statistic for linear regression **P** p-value **ERRCODE** When result is 'NA' #### Recommended Citation Your manuscript should cite the following reference: Duan H, Shi R, Kang J, et al. (2024). Population clustering of structural brain aging and its association with brain development. eLife. doi:10.7554/eLife.94970
DOI: 10.15468/dl.nt4tvz
title: Occurrence Download

description: A dataset containing 1657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-118.01253 40.7632,-105.39978 40.7632,-105.6675 47.54552,-118 47.4,-118.01253 40.7632))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ursus arctos"
 ]
}

 The dataset includes 1657 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004147-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48530/isoarch.2025.010
title: Stable Isotope Data (C, N, S) of Modern Hong Kong Humans and Their Food Sources

description: This data article describes a dataset of stable carbon, nitrogen, and sulfur isotope measurements (δ13C, δ15N, and δ34S) of modern humans in Hong Kong, along with comparative data from commonly consumed animals in the region. Hair samples were collected from 69 volunteers (47 females, 19 males, 3 undisclosed). In addition, bone collagen was extracted from 27 animal bones to establish a local dietary baseline. This dataset can be used in in anthropological and/or forensic studies of human mobility, nutrition, and the development of regional isoscape models.
DOI: 10.48530/isoarch.2025.010.v1
title: Stable Isotope Data (C, N, S) of Modern Hong Kong Humans and Their Food Sources

description: This data article describes a dataset of stable carbon, nitrogen, and sulfur isotope measurements (δ13C, δ15N, and δ34S) of modern humans in Hong Kong, along with comparative data from commonly consumed animals in the region. Hair samples were collected from 69 volunteers (47 females, 19 males, 3 undisclosed). In addition, bone collagen was extracted from 27 animal bones to establish a local dietary baseline. This dataset can be used in in anthropological and/or forensic studies of human mobility, nutrition, and the development of regional isoscape models.
DOI: 10.15472/cvi0yx
title: Caracterización biótica de la alternativa COLI para el plan de compensación del proyecto "Subestación Caracolí 220 kV y líneas de transmisión asociadas”

description: El municipio de Manatí se encuentra localizado en el sector suroriental del departamento del Atlántico, limita al norte con el municipio de Sabanalarga, al sur con el Canal del Dique y el municipio de Santa lucia, al este con el municipio de Campo de la Cruz y Candelaria, al oeste con el Embalse del Güájaro y el municipio de Repelón. Pertenece a la Cuenca Hidrográfica del Canal del Dique, con aproximadamente 108,107 ha, se encuentra subdividida en tres microcuencas, dentro de las cuales la más amplia es la correspondiente a las zonas aledañas al embalse del Guajaro. El presente documento integra la línea base de flora, avifauna, herpetofauna y mamíferos desarrollada en el marco del Plan de Compensación del Proyecto Subestación Caracolí 220 kV y líneas de transmisión asociadas (ISA–COLI), en el municipio de Manatí. Se presenta un análisis técnico que compila información ecológica relevante de los tres grupos faunísticos y de flora, incluyendo indicadores de diversidad (alfa, beta y funcional), descripciones de gremios tróficos, patrones de distribución y aspectos de vulnerabilidad del paisaje. 
Los registros faunísticos pertenecen al reino Animalia. Se encuentran distribuidos en cuatro clases Anfibios, Reptiles, Aves y Mamíferos, 29 órdenes, 60 familias y 140 especies.
Los registros de la caracterización de flora se encuentran distribuidos en 18 órdenes, 31 familias, 84 especies y 948 individuos en todas las categorías de crecimiento.
DOI: 10.48530/isoarch.2025.011
title: Carbon and nitrogen isotope data of archaeological human, animal and fish bone collagen from medieval Guadalajara, Spain, c. 10th-15th centuries CE

description: This dataset presents carbon and nitrogen stable isotope ratios on bone collagen of 46 human, 127 mammal, 30 bird and nine fish samples from seven medieval sites in western Guadalajara (Spain) dating to between 10th and 15th centuries CE, together with comparative human and fish data from Iberia published before by other researchers. These allow to discuss animal husbandry management strategies and human diet. They are especially interesting to assess the impact of changes in political rule between Islamic and Christian kingdoms on the provisioning of cities and fortifications. The analysis of contemporary cemeteries used by different religious communities also allows to explore the intersections between diet, faith and other identities. These data are particularly relevant as they represent the first comprehensive isotopic dataset for medieval Guadalajara, a region in central Iberia that has not been previously investigated at the regional scale.
DOI: 10.5281/zenodo.18407110
title: Intensivkapazitäten und COVID-19-Intensivbettenbelegung in Deutschland

description: Der Datensatz "Intensivkapazitäten und COVID-19-Intensivbettenbelegung in Deutschland" des Robert Koch-Instituts dokumentiert die tägliche intensivmedizinische Versorgungslage seit der COVID-19-Pandemie. Basierend auf Meldungen aller intensivbettenführenden Krankenhäuser in Deutschland erfasst das DIVI-Intensivregister Echtzeitdaten zu belegten und freien Intensivbetten. Die Erhebung differenziert nach Altersgruppen, Regionen und Versorgungsstufen. COVID-19-Fälle auf Intensivstationen werden gesondert ausgewiesen. Die Daten stehen aggregiert auf Bundes-, Landes- und Kreisebene zur Verfügung. Damit bildet der Datensatz eine Grundlage für die Überwachung von Kapazitäten, die Koordination von Behandlungskapazitäten und politische Entscheidungsprozesse während der Pandemie und darüber hinaus.
DOI: 10.15468/dl.x3kjcn
title: Occurrence Download

description: A dataset containing 823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthocerotophyta",
 "HasCoordinate is true",
 "Geometry POLYGON((-180 60, 180 60, 180 90, -180 90, -180 60))"
 ]
}

 The dataset includes 823 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004146-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48530/isoarch.2025.011.v1
title: Carbon and nitrogen isotope data of archaeological human, animal and fish bone collagen from medieval Guadalajara, Spain, c. 10th-15th centuries CE

description: This dataset presents carbon and nitrogen stable isotope ratios on bone collagen of 46 human, 127 mammal, 30 bird and nine fish samples from seven medieval sites in western Guadalajara (Spain) dating to between 10th and 15th centuries CE, together with comparative human and fish data from Iberia published before by other researchers. These allow to discuss animal husbandry management strategies and human diet. They are especially interesting to assess the impact of changes in political rule between Islamic and Christian kingdoms on the provisioning of cities and fortifications. The analysis of contemporary cemeteries used by different religious communities also allows to explore the intersections between diet, faith and other identities. These data are particularly relevant as they represent the first comprehensive isotopic dataset for medieval Guadalajara, a region in central Iberia that has not been previously investigated at the regional scale.
DOI: 10.5061/dryad.z34tmpgps
title: Global climate cooling spurred skipper butterfly diversification

description: Characterizing drivers governing the diversification of species-rich
 lineages is challenging. Although butterflies are one of the most
 well-studied groups of insects, there are few comprehensive studies
 investigating their diversification dynamics. Here, we reconstruct a
 phylogenomic tree for ca. 1,500 species in the family Hesperiidae, the
 skippers, to test whether historical global climate change, geographical
 range evolution, and host-plant association are drivers of
 diversification. Our findings suggest skippers originated in Laurasia
 before the Cretaceous-Paleogene mass extinction, in a northern region
 centered on Beringia before colonizing southern regions coinciding with
 global climate cooling. Climate cooling also fostered the diversification
 of skippers throughout the Cenozoic possibly by fueling biome transitions
 from closed to open ecosystems such as grasslands. An early shift from
 dicot-feeding to monocot-feeding reduced extinction rates and increased
 speciation rates, explaining the large diversity of grass-feeding adapted
 skippers. A dynamic geographic range evolution and host-plant shifts
 linked with long-term climate change explain skipper butterfly
 diversification.
description: # Global climate cooling spurred skipper butterfly diversification
 [https://doi.org/10.5061/dryad.z34tmpgps](https://doi.org/10.5061/dryad.z34tmpgps) ## Description of files: * BEAUti_configuration_file.xml - BEAUti input file for divergence time estimation in BEAST * SortaDate_selected_loci.nex - Loci selected in SortaDate for divergence time estimation in BEAST * Hesperiidae_ToL.tre - BEAST Maximum Credibility Clade chronogram * AHE_final_matrix.phy - Nucleotide matrix for phylogenetic inferences * List_of_Taxa.txt - List of taxa included in the nucleotide matrix * Partitions.txt - Locus partitioning of the nucleotide matrix * Partitions.txt.best_scheme.nex - Best partitiotning scheme estimated by ModelFinder * Adjacency_matrix_11areas_6TS.txt - Adjacency matrices used in DECX * Config_Biogeo_run_DECX_with_Hedylidae_adjacency_11areas_6TS_max4 - Starting file used in DECX
DOI: 10.48530/isoarch.2025.012
title: Bone collagen δ¹³C and δ¹⁵N data from human remains at Qornet ed-Deir and Mazraa 1154 (Roman–Byzantine Lebanon)

description: This dataset provides the first stable carbon and nitrogen isotope data for Roman and Roman-Byzantine human populations in Lebanon. It includes bone collagen results from Qornet ed-Deir (2nd–7th c. AD) in the Lebanese highlands and Mazraa 1154 (1st–3rd c. AD) in the Roman colonia of Berytus (modern Beirut). Of the 48 human samples analyzed, 23 met collagen quality criteria: all 14 from Qornet ed-Deir and 9 from Mazraa 1154. δ¹³C values at Qornet ed-Deir range from –20.0‰ to –19.0‰ and δ¹⁵N from 6.7‰ to 7.8‰. At Mazraa 1154, δ¹³C ranges from –20.4‰ to –18.8‰ and δ¹⁵N from 7.0‰ to 12.3‰. This dataset enhances the current understanding of isotopic variability in the Levant and provides rare dietary insights from both Lebanese highland and urban contexts during these periods. It offers a foundation for future regional comparisons and dietary reconstructions in Roman and Byzantine Lebanon.
DOI: 10.48530/isoarch.2025.012.v1
title: Bone collagen δ¹³C and δ¹⁵N data from human remains at Qornet ed-Deir and Mazraa 1154 (Roman–Byzantine Lebanon)

description: This dataset provides the first stable carbon and nitrogen isotope data for Roman and Roman-Byzantine human populations in Lebanon. It includes bone collagen results from Qornet ed-Deir (2nd–7th c. AD) in the Lebanese highlands and Mazraa 1154 (1st–3rd c. AD) in the Roman colonia of Berytus (modern Beirut). Of the 48 human samples analyzed, 23 met collagen quality criteria: all 14 from Qornet ed-Deir and 9 from Mazraa 1154. δ¹³C values at Qornet ed-Deir range from –20.0‰ to –19.0‰ and δ¹⁵N from 6.7‰ to 7.8‰. At Mazraa 1154, δ¹³C ranges from –20.4‰ to –18.8‰ and δ¹⁵N from 7.0‰ to 12.3‰. This dataset enhances the current understanding of isotopic variability in the Levant and provides rare dietary insights from both Lebanese highland and urban contexts during these periods. It offers a foundation for future regional comparisons and dietary reconstructions in Roman and Byzantine Lebanon.