cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8426948.v3
title: Genome-wide association study for growth and fatness traits in Chinese Sujiang pigs

description: The phenotypes and genotypes for Chinese Sujiang pigs<br>
DOI: 10.6084/m9.figshare.8427596
title: Genome-wide association study for growth and fatness traits in Chinese Sujiang pigs

description: The phenotypes and genotypes for Chinese Sujiang pigs<br>
DOI: 10.6084/m9.figshare.8427596.v1
title: Genome-wide association study for growth and fatness traits in Chinese Sujiang pigs

description: The phenotypes and genotypes for Chinese Sujiang pigs<br>
DOI: 10.5061/dryad.0cfxpnvxw
title: Microbial communities associated with the camel tick, Hyalomma dromedarii: 16S rRNA gene-based analysis

description: Background Hyalomma dromedarii is a very important blood-feeding ectoparasite that affects the health of camels in many parts of the world including the United Arab Emirates (UAE). The current study was conducted to assess the profile of the bacterial communities associated with H. dromedarii in the eastern part of the UAE in 2019 in comparison with ticks collected in 2010. Methods We performed 16S rRNA gene amplicon sequencing using primers flanking the V3 V4 region. Next generation sequencing was done using Illumina MiSeq platform. For each year, we analyzed 10 tick DNA pools representing 10 camel breeding locations. Principle component analysis (PCA) was conducted to determine patterns of diversity in bacterial communities. Results In 2010, we obtained 899,574 read counts (average 89,957 sequences per sample) and these formed 371 operational taxonomic units (OTUs). In 2019, we obtained 781,452 sequences (average 78,145 sequences per sample) and these formed 191 unique OTUs. In both years, 25 bacterial families with high relative abundance were found and 10 of them were common (between the two years): Moraxellaceae, Enterobacteriaceae, Staphylococcaceae, Bacillaceae, Corynebacteriaceae, Flavobacteriaceae, Francisellaceae, Muribaculaceae, Neisseriaceae, and Pseudomonadaceae. Data showed a higher diversity of tick microbiota associated with H. dromedarii in 2010 samples as compared to 2019 samples. In 2010 samples, one location (Al-Wagan) was predominant with richness of microbes whereas a different location (Omghafa) had higher richness of microorganisms in 2019 tick samples. Principle components analysis demonstrated a clear separation between the microbial communities between years with the exception of one site (Malaket) and Pearson’s r correlations exhibited that many bacterial genera were significantly correlated with each other. Conclusions The results presented here provide the first microbial community assessment in H. dromedarii in the UAE, and the first large-scale study in terms of duration and number of samples. The presence of bacterial families containing pathogenic genera and species shows that H. dromedarii could pose a serious health risk to the camels and the people who interact with them. Furthermore, our results can help future shotgun full genome sequencing studies.
DOI: 10.13012/b2idb-7128075_v1
title: Biotic homogenization of wetland vegetation in the conterminous United States driven by Phalaris arundinacea and anthropogenic disturbance

description: This is the dataset used in the Landscape Ecology publication of the same name. This dataset consists of the following files: NWCA_Int_Veg.txt NWCA_Reg_Veg.txt NWCA_Site_Attributes.txt NWCA_Int_Veg.txt is a site and plot by species matrix. Column labeled SITES consists of site IDs. Column labeled Plots consist of Plot ID numbers. All other columns represent species abundances (estimates of percent cover, summed across five plots). NWCA_Reg_Veg.txt is a site by species matrix of species abundances. Column labeled SITES consist of site IDs. All other columns represent species abundances (estimates of percent cover within individual plots). NWCA_Site_Attributes.txt is a matrix of site attributes. Column labeled SITES consist of site IDs. Column labeled AA_CENTER_LAT consist of latitudinal coordinates for the Assessment Area center point in decimal degrees. Column labeled AA_CENTER_LONG consist of longitudinal coordinates for the Assessment Area center point in decimal degrees. Column REFPLUS_NWCA represents disturbance gradient classes including MIN (minimally disturbed), L (least disturbed), I (intermediate), M (most disturbed). Column REFPLUS_NWCA2 represents revised disturbance gradient classes based on protocols described in the article. These revised classes were used for analysis. Column labeled STRESS_HEAVYMETAL represents heavy metal stressor classes, used to ascertain which wetlands were missing soil data. Classes in the STRESS_HEAVYMETAL column include Low, Moderate, High, and Missing. Sites with Missing STRESS_HEAVYMETAL classes were removed from analysis. More information about this dataset: All of the data used in this analysis was gathered from the National Wetlands Condition Assessment. Wetland surveys were conducted from 4/4/2011 to 11/2/2011. The entire National Wetlands Condition Assessment Dataset, which includes 3640 unique taxonomic identities of plants, can be found at: https://www.epa.gov/national-aquatic-resource-surveys/data-national-aquatic-resource-surveys
DOI: 10.22021/bbldntz201912
title: The Linked Open British National Bibliography – Books. 1950/2019-12 – N-Triples
DOI: 10.22021/bbldrdfz201912
title: The Linked Open British National Bibliography – Books. 1950/2019-12 – RDF/XML
DOI: 10.17044/nbis/g000009
title: Data from: SweHLA: the high confidence HLA typing bio-resource drawn from 1 000 Swedish genomes

description: HLA allele frequency data from the 1000 Swedish individuals included in SweGen
DOI: 10.22021/bcldntz201912
title: The Linked Open British National Bibliography – Forthcoming Books. 2019-12 – N-Triples
DOI: 10.22021/bcldrdfz201912
title: The Linked Open British National Bibliography – Forthcoming Books. 2019-12 – RDF/XML
DOI: 10.22021/bsldntz201912
title: The Linked Open British National Bibliography – Serials. 1950/2019-12 – N-Triples
DOI: 10.22021/bsldrdfz201912
title: The Linked Open British National Bibliography – Serials. 1950/2019-12 – RDF/XML
DOI: 10.6084/m9.figshare.9121901.v4
title: pik3ca data.csv

description: this hospital based cross-sectional study conducted among Sudanese women with ovarian cancer <br><br>
DOI: 10.5061/dryad.kh189321z
title: Physical and physiological performance adjust according to magnitude of an integrated immune challenge in the side-blotched lizard (Uta stansburiana)

description: Physical and physiological performance traits are constrained by their energetic costs, potentiating trade-offs when competing demands of the environment (internal, external) impinge upon concurrent investment. For reptiles, the costs of responding to internal challenges (e.g. infection, injury) can impede coping with external challenges (e.g. predator avoidance, foraging), and vice versa. Whether phenotypic shifts in performance occur may depend on not only challenge type and energetic state, but also challenge severity and response priority. To address how magnitude of an integrated immune challenge impacts both physical and physiological performance, comparisons of maximal sprint speed and rates of healing from wounds of discrete sizes (small, large) were made in male common side-blotched lizards (Uta stansburiana). Energy budget (i.e. food intake) and oxidative stress (i.e. free radicals versus antioxidant capacity) associated with performance investment were also compared among lizards by wound size. Findings herein reveal sprint speeds were not constrained overall when recovering from wounds of either size. Instead, relationships between wound healing and sprint speed deviate with wound size over time such that both are concurrently invested for small wounds and at a tradeoff for large wounds. Adjustments in performance according to the demands of an immune challenge may offset the associated energetic and oxidative costs. Nonetheless, greater wound size also led to decreases in both food intake and oxidative resistance, suggesting aspects of survival may become compromised if an immune challenge exceeds a certain magnitude.
DOI: 10.6084/m9.figshare.9729803
title: High Glucose Variability Increases 30-Day Readmission Rates in Patients with Type 2 Diabetes Hospitalized in Department of Surgery

description: Glucose variability is common among hospitalized patients with type 2 diabetes mellitus (DM). I investigated to assess the variability of glucose in patients with type 2 DM accounts for in-hospital readmission rates in department of Surgery. I retrospectively analyzed 206 patients with type 2 DM, who was admitted to our hospital for surgical interventions and re-admitted within 30 days after discharge. I also enrolled 610 age, sex and diabetic duration matched patients with type 2 DM, as control. Outcomes measure included average and standard deviation (SD) of blood glucose during admission, glycated hemoglobin (HbA1c), lipid profile, renal function, length of stay (LOS). Patients who had re-admission within 30 days after discharge had higher SD of blood glucose levels than control (84.7 ± 53.5 mg/dL vs. 46.2 ± 42.8 mg/dL, <i>p</i> &lt;0.001) but not average of blood glucose levels. Comparing to control group, the study group also had higher HbA1c (8.4 ± 1.3% vs. 7.7 ± 1.1%, <i>p</i> = 0.015) and LOS (8.5± 2.5 days vs 7.0± 1.5 days, <i>p</i> = 0.020). The independent predictors of 30-day readmission rates were SD of blood glucose during admission and HbA1c (hazard ratio: 1.680, 1.493; <i>p </i>value &lt; 0.001, 0.008, respectively.) Decreasing glucose variability during admission for surgery is important for patients with type 2 DM to decreasing re-admission rates and LOS. HBA1c may also identify patients at higher risk of postoperative complications and possibility of re-admission. <b></b><i></i><sub></sub><sup></sup><br>
DOI: 10.6084/m9.figshare.9729824
title: Untitled IHigh Glucose Variability Increases 30-Day Readmission Rates in Patients with Type 2 Diabetes Hospitalized in Department of Surgerytem

description: Decreasing glucose variability during admission for surgery is important for patients with type 2 DM to decreasing re-admission rates. Measurement of HBA1c may identify patients at higher risk of postoperative complications and possibility <b></b>of re-admission.
DOI: 10.6084/m9.figshare.9729824.v1
title: Untitled IHigh Glucose Variability Increases 30-Day Readmission Rates in Patients with Type 2 Diabetes Hospitalized in Department of Surgerytem

description: Decreasing glucose variability during admission for surgery is important for patients with type 2 DM to decreasing re-admission rates. Measurement of HBA1c may identify patients at higher risk of postoperative complications and possibility <b></b>of re-admission.
DOI: 10.25678/0001ke
title: Data for: Growth and rapid succession of methanotrophs effectively limit methane release during lake overturn

description: Abstract Lakes and reservoirs contribute substantially to atmospheric concentrations of the potent greenhouse gas methane. Lacustrine sediments produce large amounts of methane, which accumulate in oxygen-depleted hypolimnia of stratified lakes. Due to climate change and progressing eutrophication, the number of lakes with hypolimnetic methane storage may increase in the future. However, whether stored methane eventually reaches the atmosphere during lake overturn is a matter of controversy and depends critically on the response of the methanotroph assemblage. We show that the methanotroph assemblage in a mixing lake undergoes a substantial bloom and ecological succession. As a result, the methane oxidation capacity of the mixed layer kept pace with the methane supplied from the hypolimnion and most of the stored methane was oxidized. Our work demonstrates a previously unknown component of freshwater methanotroph ecology illuminating the mechanisms limiting methane transfer from lakes to the atmosphere.
DOI: 10.6084/m9.figshare.5815395.v3
title: Brand-Evoked Mental Imagery: The Role of Brands Exerting Mental Imagery

description: Dataset provides evidence of the moderating role of brand familiarity and brand favorability in visual mental imagery. Also experimental input is provided
DOI: 10.13012/b2idb-5952573_v1
title: Data for: Revising the Ozone Depletion Potentials for Short-Lived Chemicals such as CF3I and CH3I

description: This datasets provide basis of our analysis in the paper - Revising the Ozone Depletion Potentials for Short-Lived Chemicals such as CF3I and CH3I. All datasets here are from the model output (CAM4-chem). All the simulations (background and perturbation) were run to steady-state and only the last year outputs used in analysis are archived here.
DOI: 10.13012/b2idb-2626814_v2
title: Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

description: This repository includes scripts and datasets for the paper, "Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss."
DOI: 10.6084/m9.figshare.9741416.v1
title: BJSP Participating in a new group and the identification processes.sav

description: Dataset for article Participating in a new group and the identification processes: The quest for a positive social identity <br>
DOI: 10.12751/g-node.6a0d94
title: Local fied potential dataset: fronto-striatal oscillations predict vocal output in bats

description: local field potentials recorded simultaneusly in frontal and striatal areas of vocalizing bats
DOI: 10.13012/b2idb-5333299_v1
title: Bemisia tabaci ortholog set

description: This is the published ortholog set derived from whole genome data used for the analysis of members of the B. tabaci complex of whiteflies. It includes the concatenated alignment and individual gene alignments used for analyses (Link to publication: https://www.mdpi.com/1424-2818/11/9/151).
DOI: 10.13012/b2idb-7525764_v2
title: Data for: Dunes in the world’s big rivers are characterised by low-angle leeside slopes and a complex shape

description: Morphologic data of dunes in the World's big rivers. Morphologic descriptors for large dunes include: dune height, dune mean leeside angle, dune maximum leeside angle, dune wavelength, dune flow depth (at the crest), and the fractional height of the maximum slope on the leeside for each dune. Morphologic descriptors for small dunes include: dune height, dune mean leeside angle, dune maximum leeside angle, dune wavelength, and dune flow depth (at the crest).
DOI: 10.6084/m9.figshare.11770413.v5
title: Data-Jiawei Fan.xls

description: <b>Data-Jiawei Fan</b><br>
DOI: 10.25387/g3.11344037
title: Supplemental Material for Cruz-Corchado et al., 2020

description: Genes differentially expressed (&lt;0.01 FDR) in C.elegans treated with exogenous 5-HT compared to untreated controls and in tph-1 (mg280) II animals compared to wild-type controls<br>
DOI: 10.25387/g3.11344037.v1
title: Supplemental Material for Cruz-Corchado et al., 2020

description: Genes differentially expressed (&lt;0.01 FDR) in C.elegans treated with exogenous 5-HT compared to untreated controls and in tph-1 (mg280) II animals compared to wild-type controls<br>
DOI: 10.6084/m9.figshare.11770413
title: Data-Jiawei Fan.xls

description: <b>Data-Jiawei Fan</b><br>
DOI: 10.6084/m9.figshare.11770413.v1
title: Data for producing Figures 2 and 3 in Jiawei Fan et al. GRL manuscript-Characteristics and thresholds of tree response to historical and instrumental earthquakes in eastern Tibet.xls

description: <b>Data for producing Figures 2 and 3 in Jiawei Fan et al. GRL manuscript-Characteristics and thresholds of tree response to historical and instrumental earthquakes in eastern Tibet</b><br>
DOI: 10.6084/m9.figshare.11770413.v2
title: Data.xls

description: <b>Data for producing Figures 2 and 3 in Jiawei Fan et al. GRL manuscript-Characteristics and thresholds of tree response to historical and instrumental earthquakes in eastern Tibet</b><br>
DOI: 10.25573/data.11771004
title: Metadata for high resolution masked herbarium images

description: Metadata for images used to generate high-resolution masks. CatBarcode numbers correspond to image file names.
DOI: 10.25573/data.9922148
title: High resolution JPG images used for masking

description: High resolution JPG images or ferns and fern-allies used for masking.
DOI: 10.25573/data.9922232
title: High resolution ground truth masks

description: High resolution masks for ferns and fern allies
DOI: 10.12751/g-node.879051
title: A cerebellum-like circuit in the lateral line system of fish cancels mechanosensory input associated with its own movements.

description: Data (raw .smr from Spike2) and associated analyses scripts (.ipynb for python3 jupyter notebook) for the published manuscript (Perks et al. 2020). Published in the Journal of Experimental Biology.
description: IsSupplementTo: Perks KE, Krotinger A, Bodznick D (2020) A cerebellum-like circuit in the lateral line system of fish cancels mechanosensory input associated with its own movements. Experimental Biology. https://doi.org/10.1242/jeb.204438
DOI: 10.13012/b2idb-0490928_v1
title: Data for: Anthophilous hover flies (Diptera: Syrphidae) may visually discriminate neonicotinoid insecticides in sucrose solution: a choice experiment

description: These data were collected for an experiment examining effects of neonicotinoid (clothianidin) presence on hover fly (Diptera: Syrphidae) behavior. Hover flies of two species (Eristalis arbustorum and Toxomerus marginatus) were offered a choice to feed on artificial flowers laced with sucrose solution that was either contaminated (CLO) or not contaminated (CON) with clothianidin. Two different concentrations of clothianidin in 0.5 M sucrose solution were tested: 2.5 ppb and 150 ppb. We conducted four sets of 10 trials, each trial set examining a different combination of species and clothianidin dose. Across 6 hours of video for each trial we recorded 1) number of visits to each flower that resulted in feeding, and 2) amount of time spent feeding during each visit. We found that while neither species fed significantly longer on either of the solutions, E. arbustorum appeared to avoid flowers with clothianidin particularly at high rates. In the paper, we attribute this avoidance response, partially, to hover fly-visible spectral differences between the two flower choices and discuss potential implications for field and lab-based studies. In the enclosed zip file we have included all data for this project and code scripts from R. * Note: Data folder contains 4 files (instead of 6 as mentioned in Readme): e.tenax_photoreceptors.csv; hoverfly_data_UPDATE.csv; number_visits_UPDATE.csv; and Original 2018 hover fly choice test data_Clem2020.xlsx
DOI: 10.13012/b2idb-7290912_v1
title: NEXUS data file for phylogenetic analysis of Deltocephalinae (Hemiptera: Cicadellidae)

description: The Delt_Comb.NEX text file contains the original data used in the phylogenetic analyses of Zahniser & Dietrich, 2013 (European Journal of Taxonomy, 45: 1-211). The text file is marked up according to the standard NEXUS format commonly used by various phylogenetic analysis software packages. The file will be parsed automatically by a variety of programs that recognize NEXUS as a standard bioinformatics file format. The first nine lines of the file indicate the file type (Nexus), that 152 taxa were analyzed, that a total of 3971 characters were analyzed, the format of the data, and specification for two symbols used in the dataset. There are four datasets separated into blocks, one each for: 28S rDNA gene, Histone H3 gene, morphology, and insertion/deletion characters scored based on the alignment of the 28S rDNA dataset. Descriptions of the morphological characters and more details on the species and specimens included in the dataset are provided in the publication using this dataset. A text file, Delt_morph_char.txt, is available here that states the morphological characters and characters states that were scored in the Delt_Comb.NEX dataset. The original DNA sequence data are available from NCBI GenBank under the accession numbers indicated in publication. Chromatogram files for each sequencing read are available from the first author upon request.
DOI: 10.6084/m9.figshare.9724652.v1
title: Metadata record for: Bile acids targeted metabolomics and medication classification data in the ADNI1 and ADNIGO/2 cohorts

description: This dataset contains key characteristics about the data described in the Data Descriptor Bile acids targeted metabolomics and medication classification data in the ADNI1 and ADNIGO/2 cohorts. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.25678/0001ph
title: Data for: Generation of sanitation system options for urban planning considering novel technologies

description: This data has been used (1) to quantify the appropriateness of a set of sanitation technologies for a small town (Katarnyia) in Nepal and (2) to generate sanitation system options from the appropriate technologies as an input into strategic sanitation planning using a structured decision making process. For (1), the appropriateness is quantified based on a set of criteria, also called screening criteria. These criteria include technical, socio-demographic, climatic, and institutional aspects and are quantified using uncertainty functions in order to account for the quality and quantity of available input information.The data contains raw data as well as modelling results. The raw data is a compilation of information collected from literature, information collected through a household survey in the small town, field observations. They are all used to describe the screening criteria for the studied sanitation technologies and the small town. Results include: (1) the outcome of the technology appropriateness assessment (technology appropriateness scores); and (2) the sanitation system options (all possible sanitation systems built from the appropriate technologies, and a smaller set of divers and highly appropriate sanitation system options as an input into decision-making).
DOI: 10.25678/0001qj
title: Data for: Developing sanitation planning options: a tool for systematic consideration of novel technologies and systems

description: This data has been used to generate sanitation system options for three Kebeles of Arba Minch Town (Ethiopia) and to quantify corresponding appropriateness scores as well as phosphorus, nitrogen, total solids, and water flows. The data contains input and output data for the three Kebeles which are Chamo, Mehal Ketema, and Woze.The input data are stored in a csv file with the compiled information on the 38 technologies collected from literature. This includes the technology appropriateness profiles and scores and the transfer coefficients of the four substances in question.From the 38 technologies, 67470 valid sanitation systems could be generated. Results include for each Kebele: (1) technology appropriateness scores; (2) all valid sanitation system configurations; (3) the system appropriateness scores; (4) mass flows; and (5) a a smaller set of divers and highly appropriate sanitation system options as an input into decision-making.
DOI: 10.13012/b2idb-2626814_v1
title: Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

description: This repository includes scripts and datasets for the paper, "Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss."
DOI: 10.13012/b2idb-5721322_v1
title: Data from: FastMulRFS: Statistically consistent polynomial time species tree estimation under gene duplication

description: This repository includes scripts and datasets for the paper, "FastMulRFS: Fast and accurate species tree estimation under generic gene duplication and loss models." Note: The results from estimating species trees with ASTRID-multi (included in this repository) are *not* included in the FastMulRFS paper. We estimated species trees with ASTRID-multi in the fall of 2019, but ASTRID-multi had an important bug fix in January 2020. Therefore, the ASTRID-multi species trees in this repository should be ignored.