cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20761555.v1
title: Additional file 4 of Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts

description: Additional file 4: Dataset S1. Information of metagenome-assembled genomes.
DOI: 10.5281/zenodo.10047849
title: AFM-ice-Cu(111)

description: Machine learning dataset of probe particle model CO-tip atomic force microscopy (AFM) simulation images of ice clusters on the Cu(111) surface and the corresponding atomic structure files.
The dataset consists of a total of 1837 different structures which are divided into training, validation, and test sets as 1469/110/258, and for each structure the simulations are performed 10 times with different randomized simulation parameters to yield a total of 18370 simulations. Each simulation consist of 15 images at different tip-sample distances at 0.1Å step.
The dataset is saved in a compressed .tar.gz archive. The decompressed archive has samples stored in the webdataset shard format. Each shard is a tar file with a number of samples. The tar files are named in the format `Ice-K-{param}_{set}_{shard}.tar`, where {param} number stands for the different sets of randomized simulation parameters, {set} stands for either train, validation, or test set, and {shard} is the shard number.
Each sample consists of a number of AFM simulation images and an xyz structure file. The image files are named in the format `{x}.{y}.png`, where {x} is the sample number, {y} is the index for the different height slices in the simulations. The height slices are numbered from 0 to 14, such that 0 is the farthest distance and 14 is the closest distance. Similarly, the corresponding xyz structure files are named `{x}.xyz`. The comment line (second line) in the xyz files has information about the parameters used for in the simulation for the sample.
The ice structures were obtained from a neural-network potential optimization, and subsequently the Hartree potentials for the structures were obtained through a density functional theory calculation using the optB86b-vdW density functional in Vienna Ab-initio Simulation Package. The AFM simulations utilize the Lennard-Jones force field for the Pauli repulsion and van der Waals interactions and tip convolution with the Hartree potential for the electrostatic interaction.
DOI: 10.5281/zenodo.10047850
title: AFM-ice-Cu(111)

description: Machine learning dataset of probe particle model CO-tip atomic force microscopy (AFM) simulation images of ice clusters on the Cu(111) surface and the corresponding atomic structure files.
The dataset consists of a total of 1837 different structures which are divided into training, validation, and test sets as 1469/110/258, and for each structure the simulations are performed 10 times with different randomized simulation parameters to yield a total of 18370 simulations. Each simulation consist of 15 images at different tip-sample distances at 0.1Å step.
The dataset is saved in a compressed .tar.gz archive. The decompressed archive has samples stored in the webdataset shard format. Each shard is a tar file with a number of samples. The tar files are named in the format `Ice-K-{param}_{set}_{shard}.tar`, where {param} number stands for the different sets of randomized simulation parameters, {set} stands for either train, validation, or test set, and {shard} is the shard number.
Each sample consists of a number of AFM simulation images and an xyz structure file. The image files are named in the format `{x}.{y}.png`, where {x} is the sample number, {y} is the index for the different height slices in the simulations. The height slices are numbered from 0 to 14, such that 0 is the farthest distance and 14 is the closest distance. Similarly, the corresponding xyz structure files are named `{x}.xyz`. The comment line (second line) in the xyz files has information about the parameters used for in the simulation for the sample.
The ice structures were obtained from a neural-network potential optimization, and subsequently the Hartree potentials for the structures were obtained through a density functional theory calculation using the optB86b-vdW density functional in Vienna Ab-initio Simulation Package. The AFM simulations utilize the Lennard-Jones force field for the Pauli repulsion and van der Waals interactions and tip convolution with the Hartree potential for the electrostatic interaction.
DOI: 10.6084/m9.figshare.21285894.v1
title: Additional file 5 of Activation function 1 of progesterone receptor is required for progesterone antagonism of oestrogen action in the uterus

description: Additional file 5. 901 Common genes between estrogen-regulated in the OVX WT and dysregulated in the AF_FFF GD4.5.
DOI: 10.6084/m9.figshare.21285891.v1
title: Additional file 4 of Activation function 1 of progesterone receptor is required for progesterone antagonism of oestrogen action in the uterus

description: Additional file 4. 1341 Differentially expressed genes between the WT and AF1_FFF uterus on GD4.5.
DOI: 10.6084/m9.figshare.18666553
title: Additional file 1 of Identification of key biomarkers in steroid-induced osteonecrosis of the femoral head and their correlation with immune infiltration by bioinformatics analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.7132445
title: Additional file 8: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S8. Cellular component (CC) result of the downregulated differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.7132460.v1
title: Additional file 2: of Genes significantly associated with lineage II food isolates of Listeria monocytogenes

description: List of stress tolerance genes included in this study. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.23909853
title: Complete mitochondrial genome of the <i>Themus foveicollis</i> (Coleoptera: Cantharidae)

description: The genus <i>Themus</i> Motschulsky, 1858 is one of the largest genera of beetle family Cantharidae, however, no complete mitochondrial genome is available in the public database so far. Here, we sequenced and analyzed the first complete mitochondrial genome of <i>Themus</i>, with <i>T. foveicollis</i> as the representative species. The mitochondrial genome was 16,469 bp in size with 37 genes including 13 protein-coding genes (PCGs), 22 transfer <i>RNA</i> genes, and two ribosomal <i>RNA</i> genes, as well as a non-coding region, which are arranged in the same way as the hypothetical ancestral insect. It exhibited a typical high A + T bias and a higher proportion of bases A and C than T and G (A: 41.1%, T: 37.5%, G: 8.6%, C: 12.9%). The phylogenetic trees of Elateroidea were reconstructed based on 13 PCGs sequences using the Bayesian inference (BI) and maximum-likelihood (ML) analyses to investigate its phylogenetic position. The results showed that <i>Themus</i> was consistently grouped with the remaining genera of Cantharidae and placed in a monophyletic clade of Cantharinae in high supporting values, which are congruent with the morphological classification. The newly sequenced mitochondrial genome in this study constitutes important reference data for reconstructing phylogeny of the family Cantharidae or the superfamily Elateroidea.
DOI: 10.6084/m9.figshare.7132379.v1
title: Additional file 4: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S4. Biological processes (BP) result of the upregulated differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLS 162Â kb)
DOI: 10.6084/m9.figshare.7132415.v1
title: Additional file 6: of Analyses of gene expression profiles in the rat dorsal horn of the spinal cord using RNA sequencing in chronic constriction injury rats

description: Table S6. Molecular function (MF) result of the upregulated differentially expressed genes (DEGs) in chronic constriction injury (CCI) model rats. (XLS 33Â kb)
DOI: 10.6084/m9.figshare.18666679.v1
title: Additional file 1 of A signature of saliva-derived exosomal small RNAs as predicting biomarker for esophageal carcinoma: a multicenter prospective study

description: Additional file 1.
DOI: 10.6084/m9.figshare.18666687
title: Additional file 2 of N6-Methyladenosine-Related lncRNAs as potential biomarkers for predicting prognoses and immune responses in patients with cervical cancer

description: Additional file2: Table S1: Each sample in the CESC cohort is divided into two clusters based on cluster analysis. Table S2: m6A and lncRNA genes derived from the CESC cohort. Table S3: Expression relationship between m6A and lncRNA in the CESC cohort. Table S4: Clinical characteristics of each sample in the CESC cohort. Table S5: Tumour microenvironmental characteristics of each sample in the CESC cohort. Table S6: Tumour microenvironment stromal score, immune score, and total tumour microenvironment score for each sample in the CESC cohort. Table S7: Construction of an independent prognostic model for the CESC cohort: factors and coefficients. Table S8: Survival time and survival status, lncRNA coefficient, risk score, and high/low risk classification for each sample in the CESC cohort.
DOI: 10.48597/fj3v-nr6e
title: Measurement of Inorganics in air and particle phase at Saint-Nazaire-le-Désert

description: Measurement of Inorganics in air and particle phase at Saint-Nazaire-le-Désert
DOI: 10.48597/m9dx-mbjb
title: Measurement of Inorganics in air and particle phase at Revin

description: Measurement of Inorganics in air and particle phase at Revin
DOI: 10.48597/q9sc-mbm5
title: Measurement of Inorganics in air and particle phase at Donon

description: Measurement of Inorganics in air and particle phase at Donon
DOI: 10.48597/h438-jy3p
title: Measurement of Inorganics in air and particle phase at Kergoff

description: Measurement of Inorganics in air and particle phase at Kergoff
DOI: 10.15468/dl.6mkx2y
title: Occurrence Download

description: A dataset containing 273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron chamberlainii Craven"
 ]
}

 The dataset includes 273 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090379-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsem2z
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrostria neriifolia (Homolle ex Arènes) Razafim., Lantz & B.Bremer"
 ]
}

 The dataset includes 26 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090377-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/2cag-3z2j
title: Measurement of Inorganics in air and particle phase at Saint-Nazaire-le-Désert

description: Measurement of Inorganics in air and particle phase at Saint-Nazaire-le-Désert
DOI: 10.48597/2ya2-r5z3
title: Measurement of Inorganics in air and particle phase at Verneuil

description: Measurement of Inorganics in air and particle phase at Verneuil
DOI: 10.48597/3kc5-m2yu
title: Measurement of Inorganics in air and particle phase at Peyrusse Vieille

description: Measurement of Inorganics in air and particle phase at Peyrusse Vieille
DOI: 10.48597/9vy7-nce6
title: Measurement of Inorganics in air and particle phase at Donon

description: Measurement of Inorganics in air and particle phase at Donon
DOI: 10.48597/cu4x-fah8
title: Measurement of Inorganics in air and particle phase at Revin

description: Measurement of Inorganics in air and particle phase at Revin
DOI: 10.6084/m9.figshare.25533001
title: STROBE checklist for cohort studies

description: STOBE checklist
DOI: 10.6084/m9.figshare.25533001.v1
title: STROBE checklist for cohort studies

description: STOBE checklist
DOI: 10.48597/g3gu-vrhw
title: Measurement of Inorganics in air and particle phase at Kergoff

description: Measurement of Inorganics in air and particle phase at Kergoff
DOI: 10.15468/dl.xwh4ws
title: Occurrence Download

description: A dataset containing 19678710 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Passer melanurus (Statius Muller, 1776), Passer diffusus (A.Smith, 1836), Passer zarudnyi Pleske, 1896, Passer montanus (Linnaeus, 1758), Anthus rufulus Vieillot, 1818, Motacilla capensis Linnaeus, 1766, Motacilla maderaspatensis Gmelin, 1789, Euphonia laniirostris d'Orbigny & Lafresnaye, 1837, Haemorhous mexicanus (P.L.Statius Müller, 1776), Loxia curvirostra Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 19678710 records from 2209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090336-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17188/1704506
title: Materials Data on MgFe2O5 by Materials Project

description: Computed materials data using density functional theory calculations. These calculations determine the electronic structure of bulk materials by solving approximations to the Schrodinger equation. For more information, see https://materialsproject.org/docs/calculations
DOI: 10.17188/1704507
title: Materials Data on SrLaMn2O5 by Materials Project

description: LaSrMn2O5 crystallizes in the orthorhombic P2_12_12_1 space group. The structure is three-dimensional. Sr2+ is bonded in a 9-coordinate geometry to nine O2- atoms. There are a spread of Sr–O bond distances ranging from 2.48–3.09 Å. La3+ is bonded in a 8-coordinate geometry to eight O2- atoms. There are a spread of La–O bond distances ranging from 2.32–2.94 Å. There are two inequivalent Mn+2.50+ sites. In the first Mn+2.50+ site, Mn+2.50+ is bonded to six O2- atoms to form MnO6 octahedra that share corners with four equivalent MnO6 octahedra and corners with two equivalent MnO4 tetrahedra. The corner-sharing octahedra tilt angles range from 8–9°. There are a spread of Mn–O bond distances ranging from 1.94–2.20 Å. In the second Mn+2.50+ site, Mn+2.50+ is bonded to four O2- atoms to form MnO4 tetrahedra that share corners with two equivalent MnO6 octahedra and corners with two equivalent MnO4 tetrahedra. The corner-sharing octahedra tilt angles range from 23–28°. There are a spread of Mn–O bond distances ranging from 2.04–2.13 Å. There are five inequivalent O2- sites. In the first O2- site, O2- is bonded in a 5-coordinate geometry to two equivalent Sr2+, one La3+, and two Mn+2.50+ atoms. In the second O2- site, O2- is bonded to one Sr2+, one La3+, and two equivalent Mn+2.50+ atoms to form distorted corner-sharing OSrLaMn2 tetrahedra. In the third O2- site, O2- is bonded in a 6-coordinate geometry to two equivalent Sr2+, two equivalent La3+, and two equivalent Mn+2.50+ atoms. In the fourth O2- site, O2- is bonded in a 6-coordinate geometry to two equivalent Sr2+, two equivalent La3+, and two equivalent Mn+2.50+ atoms. In the fifth O2- site, O2- is bonded in a 6-coordinate geometry to two equivalent Sr2+, two equivalent La3+, and two Mn+2.50+ atoms.
DOI: 10.17188/1704508
title: Materials Data on LiAgSe by Materials Project

description: LiAgSe is half-Heusler structured and crystallizes in the cubic F-43m space group. The structure is three-dimensional. Li1+ is bonded in a body-centered cubic geometry to four equivalent Ag1+ and four equivalent Se2- atoms. All Li–Ag bond lengths are 2.63 Å. All Li–Se bond lengths are 2.63 Å. Ag1+ is bonded to four equivalent Li1+ and six equivalent Se2- atoms to form distorted AgLi4Se6 tetrahedra that share corners with four equivalent SeLi4Ag6 tetrahedra, corners with six equivalent AgLi4Se6 tetrahedra, edges with six equivalent SeLi4Ag6 tetrahedra, and faces with twelve equivalent AgLi4Se6 tetrahedra. All Ag–Se bond lengths are 3.04 Å. Se2- is bonded to four equivalent Li1+ and six equivalent Ag1+ atoms to form distorted SeLi4Ag6 tetrahedra that share corners with four equivalent AgLi4Se6 tetrahedra, corners with six equivalent SeLi4Ag6 tetrahedra, edges with six equivalent AgLi4Se6 tetrahedra, and faces with twelve equivalent SeLi4Ag6 tetrahedra.
DOI: 10.17188/1704509
title: Materials Data on Ce2AgHg by Materials Project

description: Ce2AgHg is Heusler structured and crystallizes in the cubic Fm-3m space group. The structure is three-dimensional. Ce is bonded in a body-centered cubic geometry to four equivalent Ag and four equivalent Hg atoms. All Ce–Ag bond lengths are 3.29 Å. All Ce–Hg bond lengths are 3.29 Å. Ag is bonded in a body-centered cubic geometry to eight equivalent Ce atoms. Hg is bonded in a body-centered cubic geometry to eight equivalent Ce atoms.
DOI: 10.17188/1704510
title: Materials Data on AsP by Materials Project

description: PAs is Halite, Rock Salt structured and crystallizes in the trigonal R3m space group. The structure is two-dimensional and consists of three PAs sheets oriented in the (0, 0, 1) direction. As3+ is bonded in a 6-coordinate geometry to three equivalent P3- atoms. All As–P bond lengths are 2.45 Å. P3- is bonded in a 6-coordinate geometry to three equivalent As3+ atoms.
DOI: 10.17188/1704512
title: Materials Data on Li2MgCo13O28 by Materials Project

description: Computed materials data using density functional theory calculations. These calculations determine the electronic structure of bulk materials by solving approximations to the Schrodinger equation. For more information, see https://materialsproject.org/docs/calculations
DOI: 10.17188/1704514
title: Materials Data on C2S3I by Materials Project

description: C2S3I crystallizes in the monoclinic C2/c space group. The structure is two-dimensional and consists of two C2S3I sheets oriented in the (1, 0, 0) direction. there are four inequivalent C+3.50+ sites. In the first C+3.50+ site, C+3.50+ is bonded in a distorted bent 120 degrees geometry to two S2- atoms. There is one shorter (1.72 Å) and one longer (1.73 Å) C–S bond length. In the second C+3.50+ site, C+3.50+ is bonded in a bent 120 degrees geometry to two S2- atoms. There is one shorter (1.69 Å) and one longer (1.74 Å) C–S bond length. In the third C+3.50+ site, C+3.50+ is bonded in a trigonal planar geometry to three S2- atoms. There are a spread of C–S bond distances ranging from 1.64–1.77 Å. In the fourth C+3.50+ site, C+3.50+ is bonded in a distorted single-bond geometry to one S2- atom. The C–S bond length is 1.74 Å. There are six inequivalent S2- sites. In the first S2- site, S2- is bonded in an L-shaped geometry to two C+3.50+ and one I1- atom. The S–I bond length is 4.04 Å. In the second S2- site, S2- is bonded in a distorted water-like geometry to one C+3.50+ and three I1- atoms. There are a spread of S–I bond distances ranging from 2.73–4.31 Å. In the third S2- site, S2- is bonded in an L-shaped geometry to two C+3.50+ and one I1- atom. The S–I bond length is 3.76 Å. In the fourth S2- site, S2- is bonded in a 1-coordinate geometry to one C+3.50+, one S2-, and one I1- atom. The S–S bond length is 2.11 Å. The S–I bond length is 3.56 Å. In the fifth S2- site, S2- is bonded in a single-bond geometry to one C+3.50+ and one I1- atom. The S–I bond length is 4.25 Å. In the sixth S2- site, S2- is bonded in a 1-coordinate geometry to one C+3.50+, one S2-, and one I1- atom. The S–I bond length is 3.41 Å. There are two inequivalent I1- sites. In the first I1- site, I1- is bonded in a 1-coordinate geometry to two S2- and one I1- atom. The I–I bond length is 2.91 Å. In the second I1- site, I1- is bonded in a 2-coordinate geometry to six S2- and two I1- atoms. The I–I bond length is 3.96 Å.
DOI: 10.17188/1704515
title: Materials Data on MnNCl3 by Materials Project

description: NMnCl3 is Orthorhombic Perovskite structured and crystallizes in the orthorhombic Pnma space group. The structure is three-dimensional. Mn2+ is bonded to six Cl1- atoms to form corner-sharing MnCl6 octahedra. The corner-sharing octahedra tilt angles range from 45–47°. There are a spread of Mn–Cl bond distances ranging from 2.35–2.77 Å. N1+ is bonded in a water-like geometry to two equivalent Cl1- atoms. Both N–Cl bond lengths are 1.76 Å. There are two inequivalent Cl1- sites. In the first Cl1- site, Cl1- is bonded in a distorted bent 120 degrees geometry to two equivalent Mn2+ atoms. In the second Cl1- site, Cl1- is bonded in a trigonal planar geometry to two equivalent Mn2+ and one N1+ atom.
DOI: 10.17188/1704516
title: Materials Data on Tb(NbSn)6 by Materials Project

description: Tb(NbSn)6 crystallizes in the hexagonal P6/mmm space group. The structure is three-dimensional. Tb is bonded to eight Sn atoms to form distorted edge-sharing TbSn8 hexagonal bipyramids. There are two shorter (3.18 Å) and six longer (3.36 Å) Tb–Sn bond lengths. Nb is bonded in a 12-coordinate geometry to six Sn atoms. There are a spread of Nb–Sn bond distances ranging from 2.92–3.01 Å. There are three inequivalent Sn sites. In the first Sn site, Sn is bonded in a 6-coordinate geometry to six equivalent Nb atoms. In the second Sn site, Sn is bonded in a 12-coordinate geometry to three equivalent Tb and six equivalent Nb atoms. In the third Sn site, Sn is bonded in a 8-coordinate geometry to one Tb, six equivalent Nb, and one Sn atom. The Sn–Sn bond length is 3.25 Å.
DOI: 10.17188/1704517
title: Materials Data on Rb2Cr2O7 by Materials Project

description: Computed materials data using density functional theory calculations. These calculations determine the electronic structure of bulk materials by solving approximations to the Schrodinger equation. For more information, see https://materialsproject.org/docs/calculations