cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gb5mkkwvr
title: CSV and JSON data describing the quantity and content of uploads to Thingiverse for 2015-2020

description: The COVID-19 pandemic profoundly affected various aspects of daily life,
 particularly the supply and demand of essential goods, resulting in
 critical shortages. This included personal protective equipment (PPE) for
 medical professionals and the general public. To address these shortages,
 online "maker communities" emerged, aiming to develop and
 locally manufacture critical products. While some organized efforts
 existed, the majority of initiatives originated from individuals and
 groups on platforms like Thingiverse. This paper presents a longitudinal
 analysis of Thingiverse, one of the largest maker community websites, to
 examine the pandemic's effects. Our findings reveal a surge in
 community output during the initial lockdown periods in major contributing
 nations (primarily those in the western-hemisphere), followed by a
 subsequent decline. Additionally, throughout 2020, pandemic-related
 products dominated uploads and interactions during this period. Based on
 these observations, we propose recommendations to expedite the
 community's ability to support local, national, and international
 responses to future disasters.
description: Collected using the Thingiverse API, some has been processed into
 csv to make it easier to handle.
DOI: 10.5061/dryad.6t1g1jx4c
title: Effects of early predation and social cues on the relationship between laterality and personality in the Threespined stickleback

description: Individual differences in laterality and personality are expected to
 covary, as emotions are processed differently by the two hemispheres and
 personality involves emotional behavior. Fish species are often used to
 investigate this topic due to the large variability in personality and
 laterality patterns. While some species show a positive relationship
 between lateralization strength and boldness, others show a negative
 relationship, and some show no relationship. To investigate whether this
 relationship follows changes in laterality and personality, we conducted a
 fully factorial design experiment manipulating predation and group size
 during early development. Results showed that the strength of laterality
 was influenced by predation threat, while social
 tendency and boldness were influenced by group size. These
 findings suggest that early life conditions can have an
 impact on laterality and social behavior. The relationship
 between laterality and personality traits, while present, was
 heavily influenced by the specific trial conditions, but not by
 the different developmental conditions.
description: This dataset was collected via video analysis. The analysis was
 conducted both manually by an operator, and via automated software. They
 are based on the movement of the individuals. The data have then been
 mostly used raw, and when transformed, it has been clearly
 stated.
description: The files are .xlsx and .docx. An R project with all the
 statistical analysis is included (.Rproj, .RData and .Rhistory).
DOI: 10.5061/dryad.5hqbzkhbp
title: Diadromy drives elevated rates of trait evolution and ecomorphological convergence in Clupeiformes (herring, shad, and anchovies)

description: Migration can have a profound influence on rates and patterns of
 phenotypic evolution. Diadromy is the migration between marine and
 freshwater habitats for feeding and reproduction that can require
 individuals to travel tens to thousands of kilometers. The high energetic
 demands of diadromy are predicted to select for ecomorphological traits
 that maximize swimming and locomotor efficiency. Intraspecific studies
 have shown repeated instances of divergence among diadromous and
 non-diadromous populations in locomotor and foraging traits, which
 suggests that at a macroevolutionary scale, diadromous lineages may
 experience convergent evolution onto one or multiple adaptive optima. We
 tested for differences in rates and patterns of phenotypic evolution among
 diadromous and non-diadromous lineages in Clupeiformes, a clade that has
 evolved diadromy more than 10 times. Our results show that diadromous
 clupeiforms show convergent evolution for some locomotor traits, and
 faster rates of evolution, which we propose are adaptive responses to the
 locomotor demands of migration. We also find evidence that diadromous
 lineages show convergence into multiple regions of multivariate traitspace
 and suggest these respective traitspaces are associated with differences
 in migration and trophic ecology. However, not all locomotor traits and no
 trophic traits show evidence of convergence or elevated rates of evolution
 associated with diadromy. Our results show that long-distance migration
 influences the tempo and patterns of phenotypic evolution at
 macroevolutionary scales, but there is not a single diadromous
 syndrome.
DOI: 10.48764/nk2f-nw19
title: Value Chain Map Spain Database Repository

description: Value Chain Map Spain Database Repository
DOI: 10.5061/dryad.mgqnk994r
title: Data for: Learning in ensembles of proteinoid microspheres

description: Proteinoids are thermal proteins which form microspheres in water in
 presence of salt. Ensembles of proteinoid microspheres exhibit passive
 non-linear electrical properties and active neuron-like spiking of
 electrical potential. We propose that various neuromorphic computing
 architectures can be prototyped from the proteinoid microspheres. A key
 feature of a neuromorphic system is a learning. Through the use of optical
 and resistance measurements, we study mechanisms of learning in ensembles
 of proteinoid microspheres. We anlyse 16 types of proteinoids, study their
 intrinsic morphology and electrical properties. We demonstrate that
 proteinoids can learn, memorize, and habituate, making them a promising
 candidate for novel computing.
description: This paper describes the use of proteinoid microspheres as an
 ensemble model for learning. By measuring the electrical potential of the
 microspheres with a Keithley 2450 source meter and storing the data in CSV
 files, we were able to evaluate the ability of the ensemble model to
 detect a change in its input.  The electrical activity
 of proteinoid samples was measured using iridium needle electrodes. The
 sample rate was set to one sample per minute for a total of 16 samples.
 All measurements were performed by placing the electrodes in the solution
 containing the proteinoids and connecting to the source meter or the
 potentiostat. The data from the electrodes was
 collected using a Keithey 2450 source meter in conjuction with Anapot EIS
 ZP 1000080 potentiostat and analyzed using Matlab, Origin Pro
 software. Parameters such as voltage, current and
 resistance were calculated to determine the electrical properties of the
 proteinoid samples. The codes of proteinoids can be
 seen in the paper.
description: In order to read the data, you need to have Microsoft Excel,
 Origin Pro software, and PS Trace  software installed and ready for use on
 your computer. It is important to make sure that you have the latest
 version of each of these programs for optimal performance.
DOI: 10.7280/d1st2g
title: Combination of deep XLMS with deep learning reveals an ordered rearrangement and assembly of a major protein component of the vaccinia virion

description: Vaccinia virus, the prototypical poxvirus and smallpox/monkeypox vaccine,
 has proven a challenging entity for structural biology, defying many of
 the approaches leading to molecular and atomic models for other viruses.
 Via a combination of deep learning and crosslinking mass spectrometry
 (XLMS) we have developed an atomic-level model and an integrated
 processing/assembly pathway for a structural component of the vaccinia
 virion, protein P4a. Within the pathway, proteolytic separation of the
 C-terminal P4a-3 segment of P4a triggers a massive conformational rotation
 within the N-terminal P4a-1 segment that becomes fixed by
 disulfide-locking while removing a steric block to trimerization of the
 processing intermediate P4a-1+2. These events trigger the proteolytic
 separation of P4a-2, allowing the assembly of P4a-1 into a hexagonal
 lattice that encloses the nascent virion core.
description: Protein structure prediction, <em>de novo</em>:
 Monomer and multimer structure predictions for vaccinia protein P4a
 (precursor and processing products) were run on local installations of
 AlphaFold2 and AlphaFold-multimer, using a non-docker setup (https://github.com/kalininalab/alphafold_non_docker). Models uploaded here represent the top-ranked prediction for each protein or protein complex. Predicted models were validated by XLMS detected for P4a, from intact and uncoated virions, which is described in detail in Mirzakhanyan and Gershon, PLOS Pathogens, 2019. Solvent-accessible surface distances between crosslinked residues were calculated using Topolink (A. J. R. Ferrari et al, Bioinformatics, 2019). 
description: PDB files: ChimeraX, PyMOL or similar application that allows for
 viewing PDB files.  PKL files: ChimeraX (1.4 or
 greater). FASTA files: Text editor.
DOI: 10.15468/dl.p72xq5
title: Occurrence Download

description: A dataset containing 2412 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi mégafaune en mer en période internuptiale-Suivi terrestre des oiseaux marins hivernants à la côte sur la façade Manche – Mer du Nord"
 ]
}

 The dataset includes 2412 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003558-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.bk3j9kdj4
title: Data from: Dynamic balancing of risks and rewards in a large herbivore: Further extending predator-prey concepts to road ecology

description: Animal behavior is shaped by the ability to identify risks and profitably
 balance the levels of risks encountered with the payoffs experienced.
 Anthropogenic disturbances like roads generate novel risks and
 opportunities that wildlife must accurately perceive and respond to. Basic
 concepts in predator-prey ecology are often used to understand responses
 of animals to roads (e.g., increased vigilance, selection for cover in
 their vicinity). However, prey often display complex behaviors such as
 modulating space use given varying risks and rewards, and it is unclear if
 such dynamic balancing is used by animals in the context of road
 crossings. We tested whether animals dynamically balance risks and rewards
 relative to roads using extensive field -based and GPS collar data from
 elk in Yoho National Park (British Columbia, Canada) where a major highway
 completely bisects their range during most of the year. We analyzed elk
 behavior by combining hidden Markov movement models with a step-selection
 function framework. Rewards were indexed by a dynamic map of available
 forage biomass and risks were indexed by road crossings and traffic
 volumes. We found that elk generally selected intermediate and high forage
 biomass and avoided crossing the road. Most of the time, elk modulated
 their behavior given varying risks and rewards. When crossing the highway
 compared with not crossing, elk selected for greater forage biomass and
 this selection was stronger as the number of highway crossings increased.
 However, with traffic volume, elk only balanced foraging rewards when they
 crossed a single time during a travel sequence. Using a road ecology
 system, we empirically tested an important component of predator-prey
 ecology – the ability to dynamically modulate behavior in response to
 varying levels of risks and rewards. Such a test articulates how
 decision-making processes that consider the spatiotemporal variation in
 risks and rewards allow animals to successfully and profitably navigate
 busy roads. Applying well-developed concepts in predator-prey theory helps
 understand how animals respond to anthropogenic disturbances and
 anticipate the adaptive capacity for individuals and populations to adjust
 to rapidly changing environments.
description: Data have been collected and processed following Poulin et al.
 (2023) "Dynamic balancing of risks and rewards in a large herbivore:
 further extending predator-prey concepts to road ecology", published
 in Journal of Animal Ecology. More information on the archived datasets,
 code and GIS layers can be found in the README.md file.
description: Program R is required to open the datasets (which are .rds
 files), as well as the R Markdown code file (.rmd file). The vegetation
 layers are .tif layers, which can be open in R and/or in other GIS
 programs.
DOI: 10.5061/dryad.cfxpnvxbm
title: The statistical data of bubbles during the rising stage in plunging wave breaking, along with the associated processing programs

description: During plunging wave breaking, a significant number of multi-scale bubbles
 emerge, which can persist for extended periods. These bubbles are
 accurately captured and tracked by a bubble-droplet detection program. The
 dataset provides detailed statistics on bubble properties, including size,
 velocity, and spatial distributions during the entire rising stage for
 three different wave slopes.
DOI: 10.5061/dryad.51c59zwdr
title: Effects of log length on Polygraphus proximus attack

description: Polygraphus proximus Blandford (Coleoptera: Curculionidae: Scolytinae), a
 non-aggressive bark beetle, has caused mortality of Abies spp. in Western
 Siberia, Central Asia, European Russia as well as Japan. Removing dead
 trees (i.e. salvage logging) and thinning stands are considered one of the
 best practices to reduce the risk of bark beetle outbreaks. However,
 salvaging or removing dead and thinned trees requires significant effort.
 Thus, to determine whether cutting trees shorter would reduce P. proximus
 infestation, we exposed A. sachalinensis logs of various lengths on the
 ground in a forest stand. The attack density of P. proximus significantly
 decreased with shorter log lengths. It can be concluded that cutting into
 short logs and leaving them on the ground are effective practices to
 reduce the chance of P. proximus outbreaks after natural disturbances and
 thinning.
description: # Effects of log length on *Polygrapus* *proximus* attack This dataset
 comprises one "G.csv" file. ## Description of the Data and file
 structure * Description: This file shows the result of the experiments to
 determine the effects of log length (10 cm, 20 cm, 40 cm, 60 cm, and 80cm)
 on the attack density of the bark beetle *Polygraphus proximus*. *
 Variables: * "tree": The IDs of the trees from which logs were
 obtained. * "logid": The IDs of the logs (bolts) used in the
 experiments. * "l": length of the logs (cm). * "c":
 The circumferences (cm) of the logs (= circumferences at both cut-ends and
 the middle/3). * "area": length of the logs (l) * The
 circumferences of the logs (c). * "gallery": Number of mother
 galleries under the bark. Same as the number of entrance holes by
 *Polygraphus proximus.* * "dens": Density of the entrance holes
 (= "gallery" / "area").
DOI: 10.15468/dl.demkc3
title: Occurrence Download

description: A dataset containing 346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Mongolia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Juniperus pseudosabina"
 ]
}

 The dataset includes 346 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003557-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.c866t1gc6
title: Data from: Insight into the structural and magnetotransport properties of epitaxial alpha-Fe2O3/Pt(111) heterostructures: The role of the reversed layer sequence

description: We report on the chemical structure and spin Hall magnetoresistance (SMR)
 in epitaxial α-Fe2O3(hematite)(0001)/Pt(111) bilayers with hematite
 thicknesses of 6 nm and 15 nm grown by molecular beam epitaxy on a
 MgO(111) substrate. Unlike previous studies that involved Pt overlayers on
 hematite, the present hematite films were grown on a stable Pt buffer
 layer and displayed structural changes as a function of thickness. These
 structural differences (the presence of a ferrimagnetic phase in the
 thinner film) significantly affected the magnetotransport properties of
 the bilayers. We observed a sign change of the SMR from positive to
 negative when the thickness of hematite increased from 6 nm to 15 nm. For
 α-Fe2O3(15 nm)/Pt, we demonstrated room-temperature switching of the Néel
 order with rectangular, nondecaying switching characteristics. Such
 structures open the way to extending magnetotransport studies to more
 complex systems with double asymmetric metal/hematite/Pt interfaces.
description: Conversion electron Moessbauer spectra (CEMS) were collected for
 ultrathin hematite films.  Data are the source spectra presented in Fig. 2
 of the related article: Data (text files) are the
 source CEMS spectra  Fig_2a_P39_cienkie.txt: Source
 data to Fig.2a, CEMS spectrum of a 60 Å hematite
 film.<br>Fig_2b_P39_grube.txt: Source data to Fig.2b, CEMS spectrum
 of a 150 Å hematite film..
DOI: 10.5068/d1097t
title: Data from: Anomalous Landau quantization in intrinsic magnetic topological insulators

description: The intrinsic magnetic topological insulator, Mn(Bi1-xSbx)2Te4, has been
 identified as a Weyl semimetal with a single pair of Weyl nodes in its
 spin-aligned strong-field configuration. A direct consequence of the Weyl
 state is the layer dependent Chern number, C. Previous reports in MnBi2Te4
 thin films have shown higher states either by increasing the film
 thickness or controlling the chemical potential. A clear picture of the
 higher Chern states is still lacking as data interpretation is further
 complicated by the emergence of surface-band Landau levels under magnetic
 fields. Here, we report a tunable layer-dependent C = 1 state
 with Sb substitution by performing a detailed analysis of the quantization
 states in Mn(Bi1-xSbx)2Te4 dual-gated devices—consistent with calculations
 of the bulk Weyl point separation in the doped thin films. The observed
 Hall quantization plateaus for our thicker Mn(Bi1-xSbx)2Te4 films under
 strong magnetic fields can be interpreted by a theory of surface and bulk
 spin-polarised Landau level spectra in thin film magnetic topological
 insulators.
DOI: 10.5281/zenodo.18403586
title: ICML 2026 Submission 23586 - Associated Data
DOI: 10.5061/dryad.kkwh70s92
title: Data from: Regional variation in climate change alters the range-wide distribution of colour polymorphism in a wild bird

description: According to Gloger’s rule animal colouration is expected to be darker in
 wetter and warmer climates. Such environmental clines are predicted to
 occur in colour polymorphic species and to be shaped by selection if
 colour morphs represent adaptations to different environments. We studied
 if the distribution of the colour polymorphic tawny owl (Strix aluco)
 morphs (a pheomelanic brown and a pale grey) across Europe follow the
 predictions of Gloger’s rule and if there is a temporal change in the
 geographical patterns corresponding to regional variations in climate
 change. We used data on tawny owl museum skin specimen collections. First,
 we investigated long-term spatiotemporal variation in the probability of
 observing the colour morphs in different climate zones. Second, we studied
 if the probability of observing the colour morphs was associated with
 general climatic conditions. Third, we studied if weather fluctuations
 prior the finding year of an owl explains colour morph in each climate
 zone. The brown tawny owl morph was historically more common than the grey
 morph in every studied climate zone. Over time the brown morph has become
 rarer in the temperate and Mediterranean zone, whereas it has first become
 rarer but then again more common in the boreal zone. Based on general
 climatic conditions winter and summer temperature were positively and
 negatively associated with proportion of brown morph, respectively. Winter
 precipitation was negatively associated with proportion of brown morph.
 The effects of five-year means of weather on the probability to observe a
 brown morph differed between climate zones, indicating region dependent
 effect of climate change and weather on tawny owl colouration. To
 conclude, tawny owl colouration does not explicitly follow Gloger’s rule,
 implying a time and space dependent complex system shaped by many factors.
 We provide novel insights in how the geographic distribution of
 pheomelanin-based colour polymorphism is changing.
DOI: 10.5281/zenodo.18403585
title: ICML 2026 Submission 23586 - Associated Data
DOI: 10.5061/dryad.jdfn2z3gf
title: Allozyme data from Tasmanian galaxiids

description: Context. Galaxiids are a widespread, Southern Hemisphere radiation of
 mostly obligate freshwater fishes. Tasmania houses a diversity of endemic
 species of Galaxias and Paragalaxias. Of these, many are at risk of
 extinction, being landlocked, range-restricted, and subject to
 anthropogenic threats, placing a high conservation priority on the
 region.  Aim. Our aim was to synthesize historic and published
 molecular datasets to provide the sound systematic framework needed to
 underpin future conservation and taxonomic efforts for Tasmanian
 galaxiids. Methods. Novel and published nuclear (allozyme) and matrilineal
 (cytb) datasets were generated and integrated for every putative Tasmanian
 galaxiid species lacking a comparable multi-gene assessment. Key results.
 The Tasmanian galaxiids are phylogenetically diverse, with molecular data
 generally supporting the accepted taxonomy, but with potential
 species-level diversity noted within an alpine radiation of the Galaxias
 truttaceus complex and further support for synonymy of Galaxias
 niger within Galaxias brevipinnis. Conclusions. This study highlights the
 value of multi-locus studies in both validating species-level taxonomy and
 resolving taxonomic ambiguities and conservation priorities within
 Tasmania’s galaxiids. Implications. Our integrated genetic analyses
 provide a framework to underpin more in-depth genomic approaches to assess
 additional cryptic diversity and conservation planning, such as genetic
 rescue and ex situ population security.
description: Allozyme electrophoresis on
 muscle homogenates was undertaken as described elsewhere (Richardson et
 al. 1986; Hammer et al. 2007). Homogenates were successfully screened for
 various combinations of the enzymes employed in our other studies on
 galaxiids (Adams et al. 2014; Morgan et al. 2016). Histochemical stain
 recipes plus enzyme, locus and allozyme nomenclature all follow Hammer et
 al. (2007). Adams M, Raadik
 TA, Burridge CP, Georges A (2014) Global biodiversity assessment and
 hyper-cryptic species complexes: More than one species of elephant in the
 room? Systematic Biology 63, 518–533. Hammer MP,
 Adams M, Unmack PJ, Walker KF (2007) A rethink on
 <em>Retropinna</em>: conservation implications of new taxa and
 significant genetic sub-structure in Australian smelts (Pisces :
 Retropinnidae). Marine and Freshwater Research 58, 327–341.
 Morgan DL, Beatty SJ, Close PG, Allen MG, Unmack PJ, Hammer MP,
 Adams M (2016) Resolving the taxonomy, range and ecology of
 biogeographically isolated and critically endangered populations of an
 Australian freshwater galaxiid, Galaxias truttaceus. Pacific Conservation
 Biology 22, 350–359. Richardson BJ, Baverstock PR, Adams MA (1986)
 ‘Allozyme electrophoresis. a handbook for animal systematics and
 population studies.’ (Academic Press: Sydney, NSW,
 Australia