cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/f3b2f5aa791f8df5f7bae640f079296b
title: Eight Mile Lake Research Watershed, Thaw Gradient: Geochemistry of soil pore waters sampled in May 2018 (0 - 20 cm depth) and August 2019 (0-120 cm depth) at Gradient site, 2018-2019

description: In this larger study, we are asking the question: Is old carbon that comprises the bulk of the soil organic matter pool released in response to thawing of permafrost? We are answering this question by using a combination of field and laboratory experiments to measure radiocarbon isotope ratios in soil organic matter, soil respiration, and dissolved organic carbon, in tundra ecosystems. The objective of these proposed measurements is to develop a mechanistic understanding of the SOM sources contributing to C losses following permafrost thawing. We are making these measurements at an established tundra field site near Healy, Alaska in the foothills of the Alaska Range. Field measurements center on a natural experiment where permafrost has been observed to warm and thaw over the past several decades. This area represents a gradient of sites each with a different degree of change due to permafrost thawing. As such, this area is unique for addressing questions at the time and spatial scales relevant for change in arctic ecosystems. Analysing the geochemistry of soil pore waters at Gradient site complements the overarching aim of this study. The dissolved organic carbon and mineral elements are determined in soil pore waters from sites of minimum, moderate and extensive permafrost degradation during the spring thaw (0-20 cm depth) in May 2018 and during late summer (0-120 cm depth) in August 2019. Soil pore waters were collected from sites approximately 15 m uphill of the highly monitored Gradient sites. The geochemical data was used to assess the mineral element-organic carbon associations in soil pore waters between contrasting sites of permafrost degradation.
DOI: 10.6084/m9.figshare.21803154
title: Supplementary Material for: Higher prevalence of generalized pustular psoriasis in Asia? A population-based study using claim data in China and a systematic review

description: Background: Few studies have reported the burden of generalized pustular psoriasis (GPP), a severe and potentially life-threatening skin disease, especially at a national level. Objectives: To estimate the nationwide burden of GPP in China and make a systemic review of the published data. Methods: We conducted a population-based study using Urban Basic Medical Insurance in China from 2012 to 2016. GPP cases were identified by primary diagnoses including the international classification of Diseases codes (ICD-10: L40.1 and ICD-9: 694.3). A systematic review was conducted using relevant databases up to January 2022. Results: The crude prevalence and incidence of GPP in 2016 were 1.403 (95% confidence interval [CI]: 1.115– 1.691) and 0.629 (95% CI: 0.483 – 0.775) per 100,000 person-years, respectively. The rates were higher in males than in females for both prevalence (1.429 vs. 1.135) and incidence (0.635 vs. 0.520). The prevalence and incidence showed a bimodal age distribution, with the first peak occurring in the 0–3 years age group and the second peak occurring in the 30–39 years age group. The per-capita total cost per year for one patient with GPP was 609.26 (±45.77) U.S. dollars. Seven studies were identified in a systematic review, according to which the prevalence (per 100,000) of GPP tended to be higher in Asian countries (0.746 – 8.178 in Japan and 12.230 in Korea) than in France (0.176), Sweden (6.25) and Brazil (0.7). Conclusions: This is the largest study concerning the disease burden of GPP, and in this study, the prevalence seemed to be higher in Asia. Although the direct economic burden of GPP did not seem high during the study period, the future usage of biologics and the humanistic burden should also be considered for policy-related decision-making.
DOI: 10.6084/m9.figshare.21817668.v1
title: OSU breviflora data

description: Final dataset for petal counts for the large Oklahoma State breviflora growout. <br> NOTE: this is the dataset produced by the cleaning script; so this can be immediately applied to the analysis script. <br> Also included is the raw data plus the cleaning script, if you want to make this set. If you do that, you will need to change the date in the filename to load it in the analysis script.
DOI: 10.17861/f127fd8d-9394-4d74-abf0-7af35bd7192e
title: Faceted HyperSARA for RI wideband intensity imaging: Cygnus A wideband image at C band

description: Application of the wideband intensity imaging, dubbed Faceted HyperSARA to large scale radio interferometric (RI) observations of the celebrated radio galaxy Cygnus A from the VLA telescope. The dataset consists of wideband images of the celebrated radio galaxy Cygnus A obtained from 7.4 GB of VLA data, spanning the frequency range [4,8] GHz, using the Faceted HyperSARA approach (Thouvenin et al. 2022) and the benchmark methods. We investigate the scalability and precision of the proposed algorithm via two experiments. The first experiment consists in the reconstruction of a 15 GB image cube over the field of view 2.56 arcmin x 1.536 arcmin, and at the spatial resolution 0.06 arcsec and full spectral resolution (8 MHz). Wideband images are obtained with Faceted HyperSARA and the benchmark method SARA (Onose et al. 2017). The second experiment consists in the reconstruction of a 3.6 GB image cube over the field of view 2.1709 arcmin x 3.6181 arcmin and at the spatial resolution 0.0424 arcsec and the reduced spectral resolution (128 MHz), leveraging a joint image and data dimensionality reduction technique via visibility gridding. Wideband images are obtained with Faceted HyperSARA and the benchmark method of the WSClean software (Offringa and Smirnov 2017). All image cubes are provided in FITS format. GIF files for enhanced visual comparison of the different methods are also provided for both experiments.
DOI: 10.18462/iir.icr.2019.1168
title: Cold thermal energy storage with low-temperature plate freezing of fish on offshore vessels.
DOI: 10.25318/3610046801-eng
title: Gross domestic product (GDP) at basic prices, by census metropolitan area (CMA)

description: This table contains data for gross domestic product (GDP), in current dollars, for all census metropolitan area and non-census metropolitan areas.
DOI: 10.3886/e186201v1
title: Demand for in-app purchases in mobile apps - A difference-in-difference approach

description: Data (normalized) on number of daily users, conversion rate (nr of purchases/nr of users) and videos (nr of rewarded videos/nr of users) for five games on six European markets surrounding Apple adjustment of pricing tiers in August 2021. Replication file for some of the key results in Enache, Friberg, Wiklander, 2023, "Demand for in-app purchases in mobile apps - A difference-in-difference approach" in International Journal of Industrial Organization.
description: Market level (country/game/platform) on usage of word games on mobile apps. . Smallest Geographic Unit: Country
description: Administrative records
DOI: 10.5281/zenodo.5722622
title: Supplementary files for manuscript: Acacia organelle genome assembly

description: Supplementary files to accompany manuscript regarding genome assembly of organelles from <em>Acacia pycnantha. </em> This manuscript assembles a mitochondrial genome (the mitome) and a chloroplast genome (the plastome). Results are referred to in the manuscript, and included here. For each organelle genome, there are 14 assemblies in fasta format, and associated GFA format file if available (not all stages produce this file), as well as the Spades GFA from Unicycler. For each Unicycler assembly there is a set of annotation files that include GenBank and GFF3 formats, and outputs from HMMER, ARAGORN, and tRNAscan-SE. There is also a bam file of reads mapped to alternate assembly paths for the mitome to explore the 90 Kbp contig of interest. A copy of the assembly script (assembler.sh) is included and is also available at this repository - https://github.com/AnnaSyme/organelle-assembly - with instructions on how to run the script and the required inputs and tools. (This Zenodo version is an update, with some duplicated files removed from the annotation folders, and information about the files now included.)
DOI: 10.5281/zenodo.6066070
title: Data from Wilson et al.: Applying computer vision to digitised natural history collections for climate change research: temperature-size responses in British butterflies

description: This dataset supports the publication: Wilson et al. "Applying computer vision to digitised natural history collections for climate change research: temperature-size responses in British butterflies". These are the data used for the data figures (Fig 3-6, SI Figs 1-2) and the supplementary information tables.
DOI: 10.5281/zenodo.7638775
title: NIR-MFCO dataset: Near-infrared-based false-color images of post-consumer plastics at different material flow compositions and material flow presentations

description: Determining mass-based material flow compositions (MFCOs) is crucial for assessing and optimizing the recycling of post-consumer plastics. Currently, MFCOs in plastic recycling are mostly determined through manual sorting analysis, but the use of inline near-infrared (NIR) sensors holds potential to automate the characterization process, paving the way for novel sensor-based material flow characterization (SBMC) applications. The NIR-MFCO dataset aims to expedite SBMC research by providing NIR-based false-color images of plastic material flows with their corresponding MFCOs. The false-color images were created through the pixel-based classification of binary material mixtures using a hyperspectral imaging camera (EVK HELIOS NIR G2-320; 990 nm – 1678 nm wavelength range) and the on-chip classification algorithm (CLASS 32). The resulting NIR-MFCO dataset includes <em>n</em> = 880 false-color images from three test series: (T1) high-density polyethylene (HDPE) and polyethylene terephthalate (PET) flakes, (T2a) post-consumer HDPE packaging and PET bottles, and (T2b) post-consumer HDPE packaging and beverage cartons for <em>n</em> = 11 different HDPE shares (0% - 50%) at four different material flow presentations (singled, monolayer, bulk height H1, bulk height H2). The dataset can be used, e.g., to train machine learning algorithms, evaluate the accuracy of inline SBMC applications, and deepen the understanding of segregation effects of anthropogenic material flows, thus further advancing SBMC research and enhancing post-consumer plastic recycling.
DOI: 10.6084/m9.figshare.21770465.v1
title: Study validity assessment results for "How do natural changes in flow magnitude affect fish abundance and biomass in temperate regions? A systematic review"

description: In this excel file we provide a the results of study validity assessments for each article/project included in the narrative synthesis. <br> Tab 1: Study validity assessment: Includes assessment for each project. <br> Tab 2: Criteria and definitions: includes definitions for each criterion considered <br> Tab 3: Study validity set aside: includes assessments that were subsequently changed due to a change in extraction requirements (i.e., spatial BA studies converted to temporal BA studies).
DOI: 10.6084/m9.figshare.22094600.v2
title: Crater counting data for Zhao et al. 2023 Icarus

description: Shapefiles of Zhao et al. (2023) PIV age units and crater count areas. Citation: Zhao, Z., Chen, J., Ling, Z., et al., (2023), Chronology, composition, and mineralogy of mare basalts in the junction of Oceanus Procellarum, Mare Imbrium, Mare Insularum, and Mare Vaporum. Icarus. In revision.
DOI: 10.17632/7wy7b8hjz7.3
title: Interfacing of Point-of-Care Urinalysis Results and Errors

description: Supplementary File 1:  Data for point-of-care urinalysis results entered into electronic medical record either manually or by electronic interface.  The urinalysis analyzer was Clinitek Status Plus (Siemens Healthineers, Cary, NC) using either Multistix 10 SG or Uristix 4 (Siemens Healthineers) urinalysis strips.  [Tab A]:  Key for classes of errors (used in Tabs C-F) and example of errors for color and specific gravity.  [Tab B]: Interfaced data choices for the urinalysis components.  [Tab C]: Interfaced data.  Urine color and clarity are interpreted by the operator, with the choices selected within the urinalysis instrument software and then transmitted by interface to the EMR.  The remaining urinalysis results are read by the instrument and directly interfaced with the EMR electronically.  The columns with error type use the number key in Tab A.  [Tab D]: “Manual Pre-simplification” – These results are interpreted by the staff performing the test and entered into the EMR by selecting options from a series of drop-down menus. These tests were performed between January 2019 and September 2019. In October 2019, we restricted the number of options available in the provided drop-down menus to simplify data reporting and improve consistency.  The columns with error type use the number key in Tab A.  [Tab E]: Manual – Post-Simplification” – These data are similar to “manual pre-simplification” but occurred after the restriction in drop down menu options.  The columns with error type use the number key in Tab A. [Tab F]: “Enter-Edit” – These results are interpreted by the staff performing the test and then manually entered into the EMR using free text without character restrictions.  The following data (when available) were collected and found in Tabs B, C, D, and E: deidentified sample number, order description (either “Multistix 10”, “Uristix 4”, or “individual component"), age at time of testing (90 years or older reported as > 90), legal sex (male, female, or unknown), and urinalysis component data (color, clarity, glucose, bilirubin, ketones, specific gravity, blood, pH, protein, urobilinogen, nitrite, leukocyte esterase).  The columns with error type use the number key in Tab A.
DOI: 10.23728/fmi-b2share.daab03d71fc94bcd893b6c97adce497f
title: Data for the manuscript "Initial results of the relative humidity observations by MEDA instrument onboard the Mars 2020 Perseverance Rover" submitted to JGR Planets M2020 special issue "Crater Floor" (10.1029/2022JE007447)

description: Data used for the manuscript, which are not available in the Planetary Data System (PDS) or in the cited references. Units: temperature: K, VMR: ppm, Relative humidity RH: per cent, frost point: K. Humidity sensor RH output smoothed by 10s moving average filter. All the uncertainties are standard uncertainties (k=1, that is 1*sigma). - Single Column Model outputs for the sol 143 (Table 1) - Single Column Model outputs for the sol 295 (Table 2) - Frost points and frost point standard uncertainty, HRIM and CM, sols 80-410, both LMST and LTST - ATS single values and VMRs and VMR standard uncertainties for the night sol 345-346 in Fig 3. 0.5% RH limit was used for calculating VMR. - Max %RH per sol calculated for the airstream using ATS single values, 450s moving average applied over ATS values before calculating %RH-in-the-airstream values for sols 80-410, HRIM observations - Max and min VMR/sol and VMR standard uncertainties for sols 80-410, HRIM observations - RH for the airstream (RH_Air) for all the HRIM points sols 80-410, 450s moving average applied over ATS single values before calculating RH air values - VMR values for HRIM and CM, CMs sampled 1/15s and 1/minute (Two files), sols 80-410 - VMR and RH airstream values, CM and HRIM, for the dry season example (sols 138-148) and wet season (sols 290-300) example for SCM comparisons. ATS single values filtered by 600 s moving average.
DOI: 10.34992/dc0p-kf56
title: Southampton Island Marine Ecosystem Project (SIMEP)
DOI: 10.5281/zenodo.7015783
title: Comprehensive 100-bp resolution genome-wide epigenomic profiling data for the hg38 human reference genome

description: This is a comprehensive collection of diverse epigenomic profiling data in 100-bp resolution with full genome-wide coverage. The datasets are processed from raw read count data collected from five types of sequencing-based assays collected by the Encyclopedia of DNA Elements (ENCODE, http://www.encodeproject.org) consortium. A total of 6,305 alignment profiles from various high-throughput sequencing assays available on the ENCODE database were preprocessed and filtered according to ENCODE’s data standard
DOI: 10.5281/zenodo.7246210
title: ALIMA and BAHAMAS data for SOUTHTRAC flight ST08

description: Temperature vertical profiles from the ALIMA lidar during SOUTHTRAC flight ST08. The three components of velocity, pressure and temperature recorded from BAHAMAS instrument along the airplane trajectory.
DOI: 10.6084/m9.figshare.21916020
title: Supplementary Material for: Reactive Neutrophilic Dermatoses in Adult-Onset Immunodeficiency due to Interferon-Gamma Autoantibody and Their Associated Factors

description: <b><i>Background:</i></b> Adult-onset immunodeficiency (AOID) due to interferon-gamma autoantibody is a rare, acquired immunodeficiency disease. Reactive neutrophilic dermatoses (RND), predominantly Sweet syndrome (SS), and generalized pustular eruption have been reported repeatedly. <b><i>Objectives:</i></b> The aims of this study were to describe the cutaneous manifestations in AOID patients and determine the incidence of RND and associated factors using a larger population size than have been previously reported. <b><i>Methods:</i></b> A retrospective chart review of all confirmed AOID cases in Chiang Mai University Hospital from January 2006 to June 2020 was conducted. The demographics and characteristics of RND including type, onset, and laboratory information in every episode of cutaneous manifestations were collected. Generalized estimating equations of binary logistic regression were used to determine the indicators of RND. <b><i>Results:</i></b> A total of 146 patients with confirmed AOID were identified. Of these, 57 cases (39%) developed at least one episode of RND. Thirteen cases (23%) of the patients experienced RND twice during the follow-up period. All recurrence of RND displayed the same cutaneous phenotype, with the exception of 2 cases who had both SS and generalized pustular eruption. Finally, 49 episodes of SS and 22 episodes of generalized pustular eruption were included in the analysis. All patients with RND had concomitant active opportunistic infections, of which most were non-tuberculous mycobacterium (NTM) infection. NTM infection (prevalence odds ratio [POR] 2.87), lymphadenopathy (POR 3.30) as well as lower serum alkaline phosphatase (ALP) level (POR 0.71 for every 100-unit increment in ALP) were found to be significantly associated with RND occurrence. <b><i>Conclusions:</i></b> 39% of our AOID patients experienced RND once during the course of the disease. Notable factors associated with RND occurrence were concomitant NTM infection, lymphadenopathy, and lower level of ALP.
DOI: 10.5284/1018222
title: Archaeological Evaluation of the Anglo-Saxon and Viking site at Torksey Lincolnshire
DOI: 10.5281/zenodo.7819585
title: Empty micelle - 60 SDS - Na neutralized - CHARMM36m - 293K - OPC water model - replica 2 - every 100 fs

description: Empty micelle simulation to investigate the effect of water model and peptide on SRD. Use of a higher saving frequency in order to investigate the existence of faster timescales in the relaxation data. Start frame being the end frame from "Empty micelle - 60 SDS - q0.38 - PBS neutralized - CHARMM36m - 293K - OPC water model - replica 0"
DOI: 10.5281/zenodo.7819584
title: Empty micelle - 60 SDS - Na neutralized - CHARMM36m - 293K - OPC water model - replica 2 - every 100 fs

description: Empty micelle simulation to investigate the effect of water model and peptide on SRD. Use of a higher saving frequency in order to investigate the existence of faster timescales in the relaxation data. Start frame being the end frame from "Empty micelle - 60 SDS - q0.38 - PBS neutralized - CHARMM36m - 293K - OPC water model - replica 0"
DOI: 10.13026/c24h3n
title: Gait in Parkinson’s Disease

description: Parkinson's disease (PD) is one of the most common movement disorders, affecting approximately 1 million Americans (estimates range between 4 and 6.5 million people worldwide) and about 1% of older adults. In the US alone, 60,000 new cases are diagnosed each year. PD is a chronic and progressive neurological disorder that results in tremor, rigidity, slowness, and postural instability. A disturbed gait is a common, debilitating symptom; patients with severe gait disturbances are prone to falls and may lose their functional independence.

This database contains measures of gait from 93 patients with idiopathic PD (mean age: 66.3 years; 63% men), and 73 healthy controls (mean age: 66.3 years; 55% men). The database includes the vertical ground reaction force records of subjects as they walked at their usual, self-selected pace for approximately 2 minutes on level ground. Underneath each foot were 8 sensors (Ultraflex Computer Dyno Graphy, Infotronic Inc.) that measure force (in Newtons) as a function of time. The output of each of these 16 sensors has been digitized and recorded at 100 samples per second, and the records also include two signals that reflect the sum of the 8 sensor outputs for each foot.
DOI: 10.17632/zjrrwkcbzd.1
title: Alignment and newick trees of the phylogeny of Melissodes (Hymenoptera: Apinae).

description: These data are the alignment for molecular data and the resultant Bayesian and Maximum Likelihood trees for the genus Melissodes.
DOI: 10.18462/iir.icr.2019.1006
title: Extending the autonomy time of an icelined solar powered vaccine cooler.
DOI: 10.5281/zenodo.3406523
title: The CAD WALK Hallux Valgus Dataset (Pre-Surgery)

description: This dataset contains the raw dynamic plantar pressure measurements of 50 Dutch individuals with Hallux Valgus collected prior to surgical intervention at Sint Maartenskliniek centres in the Netherlands. For each individual, between 8-15 dynamic plantar pressure measurements were collected from both feet. Also collected are walking speeds for each plantar pressure measurements, and demographic information of all individuals measured (age, height, weight, shoe size, sex, handedness, leg dominance). Additionally, x-ray images were used to measure the hallux valgus angle and intermetatarsal angle for each hallux valgus case. Finally, each participant also completed two foot self-assessment questionnaires: the Foot Function Index (FFI-5pt) and the Manchester-Oxford foot questionnaire. The score from these self-assessments are also provided. For more information, please see the Readme.pdf file accompanying this dataset.
description: This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 746614.
DOI: 10.5281/zenodo.6037629
title: Result files (ONLYSTEREO): "Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data"

description: Result files associated with the publication: "<strong>Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data</strong>" by Bach et al. The following files are included in the archive: Raw max-marginal predictions using LC-MS²Struct for all LC-MS² experiments of the ONLYSTEREO setup Averaged max-marginals for the LC-MS²Struct over all SSVM models Ranks for the ground-truth structures predicted by Only MS² and LC-MS²Struct (molecule class analysis) Instructions: clone the repository containing the experimental scripts and analysis notebooks: https://github.com/aalto-ics-kepaco/lcms2struct_exp download the archive in this repository unpack the archive in the git-repository root directory follow the instructions given in the README.md of the git-repository to reproduce the figures, etc.