cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xhyere
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mycale alagoana Cedro, Hajdu & Correia, 2011"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021146-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yde8jt
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Bryoerythrophyllum campylocarpum (Müll.Hal.) H.A.Crum"
 ]
}

 The dataset includes 360 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021147-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drgv27
title: Occurrence Download

description: A dataset containing 372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Symplocos kuroki Nagam."
 ]
}

 The dataset includes 372 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021148-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtq6cq
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sardinops melanostictus (Temminck & Schlegel, 1846)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 207 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021149-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ptdxup
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sardinops melanostictus (Temminck & Schlegel, 1846)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 207 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021150-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13144/lil-1001
title: Base centrale Scolarité - 2015

description: Les données extraites de la BCS couvrent 99% des élèves des établissements du second degré publics et privés (sous contrat et hors contrat) dépendant du Ministère de l'éducation nationale (France métropolitaine + DOM). Elles décrivent, d'une part, l'élève par ses caractéristiques sociodémographiques (âge, sexe, origine sociale, nationalité) et, d'autre part, son établissement (caractéristiques administratives et géographiques). Le fichier « élèves » contient 5 820 324 élèves du 2nd degré inscrits à la rentrée scolaire 2015-2016, le fichier « établissements » contient 10 828 enregistrements.
DOI: 10.15468/dl.m2enj9
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Plecotus austriacus (J.Fischer, 1829)",
 "Year 2010-2025"
 ]
}

 The dataset includes 182 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002848-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pj2xp
title: Occurrence Download

description: A dataset containing 263670 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinanthus minor L."
 ]
}

 The dataset includes 263670 records from 1335 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002829-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4v59f6
title: Occurrence Download

description: A dataset containing 169477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((118.27532 27.8934,124.12895 27.95547,124.07776 33.65864,118.16374 33.67724,118.27532 27.8934))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1500-2023"
 ]
}

 The dataset includes 169477 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019530-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jun46d
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Masdevallia virens Luer & Andreetta"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174778-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whqchs
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eichhornia crassipes (Mart.) Solms",
 "Country is Spain"
 ]
}

 The dataset includes 130 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073761-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grxtns
title: Occurrence Download

description: A dataset containing 849965 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-121.11647 40.267,-121.07028 40.267,-121.62105 47.198,-121.97671 47.198,-121.11647 40.267))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 849965 records from 430 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064970-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuqu5j
title: Occurrence Download

description: A dataset containing 26674 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cicuta virosa L."
 ]
}

 The dataset includes 26674 records from 204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020109-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9u61io
title: Occurrence Download

description: A dataset containing 227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phaethornis longirostris (Delattre, 1843)",
 "Country is Mexico",
 "Month is March"
 ]
}

 The dataset includes 227 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073764-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8nz74
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is India",
 "HasCoordinate is true",
 "TaxonKey is Prosopis cineraria (L.) Druce",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020112-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzfeq9
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.49392 41.45078,-5.71995 41.45078,-5.71995 44.16086,-9.49392 44.16086,-9.49392 41.45078))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Harmonia axyridis (Pallas, 1773)"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015737-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h85ksf
title: Occurrence Download

description: A dataset containing 411 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elaeagnus angustifolia L.",
 "Country is Spain"
 ]
}

 The dataset includes 411 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073765-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjemjv
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Meriania hernandi L.Uribe"
 ]
}

 The dataset includes 33 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174779-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzt2pk
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chimonobambusa quadrangularis (Franceschi) Makino"
 ]
}

 The dataset includes 287 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064961-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6oefmo
title: Occurrence Download

description: A dataset containing 2114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus camaldulensis Dehn.",
 "Country is Spain"
 ]
}

 The dataset includes 2114 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073766-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3fy85
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xanthocyparis vietnamensis Farjon & Hiep"
 ]
}

 The dataset includes 94 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020120-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxnz8x
title: Occurrence Download

description: A dataset containing 408 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "Geometry POLYGON((23.39211 9.37923,61.25838 9.37923,61.25838 37.80823,23.39211 37.80823,23.39211 9.37923))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oryx leucoryx (Pallas, 1777)",
 "Year 1950-2023"
 ]
}

 The dataset includes 408 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015741-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xww9o
title: Occurrence Download

description: A dataset containing 32100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sceloporus occidentalis Baird & Girard, 1852"
 ]
}

 The dataset includes 32100 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073767-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tubmdz
title: Occurrence Download

description: A dataset containing 2288 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cladonia rangiferina (L.) Weber ex F.H.Wigg.",
 "Geometry POLYGON((-169.840169 73.902013,-169.840169 13.361835,-27.19692 13.361835,-27.19692 73.902013,-169.840169 73.902013))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2288 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020121-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e89zf7
title: Occurrence Download

description: A dataset containing 1669397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is CR",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1669397 records from 3808 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017584-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25422/azu.data.25743963
title: The City-Centric Dataset: Metropolitan Geographic Definitions and Code for US Metropolitan Statistical Areas (MSAs), 1980-2020

description: Comparative urban research in the USA has yet to fully grapple with geographic and definitional boundary changes of urban areas across time, resulting in spatial error and bias that severely affects empirical results. In the accompanying paper published in PLOS ONE, we center the urban area as the fundamental unit of analysis—a city-centric approach—to provide robust and dynamic metropolitan definitions that advance comparative urban studies while improving precision and accuracy in urban data analysis across different time scales.This dataset includes a new spatial dataset, programming code, and metropolitan geographic definitions for the manuscript "Advancing Methods for Comparative Urban Research: A City-Centric Protocol and Longitudinal Dataset for US Metropolitan Statistical Areas" (PLOS ONE). This dataset provides the customized Public Use Microdata Sample (PUMS) definitions used in our study that make US Metropolitan Statistical Areas (MSA) geographies comparable over time, as well as the code to process and create the results and figures in the paper. Our geographic definitions cover the 50 largest US MSAs from 1980-2020.<br><br>If you use this dataset or code, please cite as follows: Jurjevich, Jason R., Katie Meehan, Nicholas M.J.W. Chun, and Greg Schrock (2025): "The City-Centric Dataset: Metropolitan Geographic Definitions and Code for US Metropolitan Statistical Areas (MSAs), 1980-2020." Tucson, AZ: University of Arizona Research Data Repository. DOI: 10.25422/azu.data.25743963<br><br><br><i>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i><br>
DOI: 10.15468/dl.h4x5xc
title: Occurrence Download

description: A dataset containing 22608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-2500.0",
 "Geometry POLYGON((-81.06442 42.17367,-92.3391 37.20722,-93.69864 29.39782,-80.98016 29.60252,-73.92519 36.18847,-66.73094 42.27159,-58.10516 45.82753,-59.45271 47.35219,-62.16414 46.86796,-62.7174 48.03161,-65.13175 49.64219,-69.98899 48.69607,-73.51657 46.41631,-79.78214 43.95261,-81.06442 42.17367))",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Continent derived from coordinates, The taxon ID was not used in backbone matching, Modified date invalid, Multimedia URI invalid, Multimedia date invalid, Occurrence status inferred from individual count, Institution match fuzzy, Institution collection mismatch)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Urocyon cinereoargenteus (Schreber, 1775), Vulpes vulpes (Linnaeus, 1758), Canis latrans Say, 1823)",
 "Year 2010-2025"
 ]
}

 The dataset includes 22608 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064027-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skwdff
title: Occurrence Download

description: A dataset listing the 1070 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is IND.4.10.1_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 1070 records were derived from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064021-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jshdwm
title: Occurrence Download

description: A dataset containing 664 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes cataphylla Dyar, 1916"
 ]
}

 The dataset includes 664 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064028-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18131/se91f-wrk82
title: Data for: Tcf21 as a Founder Transcription Factor in Specifying Foxd1 Cells to the Juxtaglomerular Cell Lineage

description: Supplemental Figures 1-5: 

Suppl Fig. 1: Tissue clearing and immunostaining of kidneys from Ren1dCre/+;Tcf21f/f and controls. Babb clearing, immunostaining with the pan-endothelial marker PECAM (CD31; red), and 3D imaging show no difference in vascular morphology between Ren1dCre/+;Tcf21f/f and control kidneys at E16.5. n=4, females. 

Suppl Fig. 2: Histology from 2-month-old Ren1dCre/+;Tcf21f/f and control kidneys. H&E (top) and Trichome (bottom) stainings reveal no gross phenotypic changes in Ren1dCre/+;Tcf21f/f kidneys compared with controls. Vascular wall and glomeruli morphology appear intact. n=16, females. Scale bar 100 μm. 

Suppl Fig. 3: Normal renin mRNA expression in Ren1dCre/+;Tcf21f/f kidneys at 2 months. In-situ hybridization (RNAscope). A-B. Renin expression (blue) is detected in the arteriolar walls (yellow arrows) and in the glomerulus hilum (black arrows) similarly in 2-month-old Ren1dCre/+; Tcf21f/f and control kidneys. C. The distribution of renin-expressing cells is similar in Ren1dCre/+; Tcf21f/f and controls. n=4, females. Scale bar 75μm (A), 100μm (B,C). 

Suppl Fig. 4: In-situ hybridization of Tcf21 and renin in E14.5 Ren1d+/+;Tcf21f/f kidneys. In-situ hybridization (RNAscope) shows no co-localization of Tcf21 (purple) and renin (blue) mRNA in E14.5 control kidneys. This time point was chosen because renin-expressing cells emerge around E13.5. n=2, sex not determined.

Suppl Fig. 5: Juxtaglomerular (JG) Cell Psuedotime Trajectory via scRNA-seq and scATAC-seq. A. UMAP visualization showing clustering of the entire GFP+ cell population isolated from Foxd1Cre/+;Rosa26mTmG/+ control mouse kidneys at E12, E18, P5, and P30 (n=6,191 cells). A total of 19 populations were identified. Populations representing stromal derivatives (clusters 2-16) are highlighted in red. B. Bubble plot demonstrating expression of key kidney cell lineage markers across the 19 clusters.  C. Cluster heatmap showing marker expression across all GFP+ clusters. D. UMAP visualization of the pseudotime trajectory mapping the differentiation form metanephric mesenchyme progenitors to mature renin-expressing JG cells (n=2,054 cells), shown by embryonic stage. Early populations with high Foxd1 expression serve as the starting point, and late populations with high Ren1/Akr1b7 expression were identified as endpoints. E-G. Feature plots visualizing Foxd1, Renin, and Akr1b7 expression levels across the entire GFP+ cell populations.

Supplemental Table 1: 

Suppl Table 1: Primer information (genotyping).
DOI: 10.18131/zebq0-q7p64
title: Data for: Tcf21 as a Founder Transcription Factor in Specifying Foxd1 Cells to the Juxtaglomerular Cell Lineage

description: Supplemental Figures 1-5: 

Suppl Fig. 1: Tissue clearing and immunostaining of kidneys from Ren1dCre/+;Tcf21f/f and controls. Babb clearing, immunostaining with the pan-endothelial marker PECAM (CD31; red), and 3D imaging show no difference in vascular morphology between Ren1dCre/+;Tcf21f/f and control kidneys at E16.5. n=4, females. 

Suppl Fig. 2: Histology from 2-month-old Ren1dCre/+;Tcf21f/f and control kidneys. H&E (top) and Trichome (bottom) stainings reveal no gross phenotypic changes in Ren1dCre/+;Tcf21f/f kidneys compared with controls. Vascular wall and glomeruli morphology appear intact. n=16, females. Scale bar 100 μm. 

Suppl Fig. 3: Normal renin mRNA expression in Ren1dCre/+;Tcf21f/f kidneys at 2 months. In-situ hybridization (RNAscope). A-B. Renin expression (blue) is detected in the arteriolar walls (yellow arrows) and in the glomerulus hilum (black arrows) similarly in 2-month-old Ren1dCre/+; Tcf21f/f and control kidneys. C. The distribution of renin-expressing cells is similar in Ren1dCre/+; Tcf21f/f and controls. n=4, females. Scale bar 75μm (A), 100μm (B,C). 

Suppl Fig. 4: In-situ hybridization of Tcf21 and renin in E14.5 Ren1d+/+;Tcf21f/f kidneys. In-situ hybridization (RNAscope) shows no co-localization of Tcf21 (purple) and renin (blue) mRNA in E14.5 control kidneys. This time point was chosen because renin-expressing cells emerge around E13.5. n=2, sex not determined.

Suppl Fig. 5: Juxtaglomerular (JG) Cell Psuedotime Trajectory via scRNA-seq and scATAC-seq. A. UMAP visualization showing clustering of the entire GFP+ cell population isolated from Foxd1Cre/+;Rosa26mTmG/+ control mouse kidneys at E12, E18, P5, and P30 (n=6,191 cells). A total of 19 populations were identified. Populations representing stromal derivatives (clusters 2-16) are highlighted in red. B. Bubble plot demonstrating expression of key kidney cell lineage markers across the 19 clusters.  C. Cluster heatmap showing marker expression across all GFP+ clusters. D. UMAP visualization of the pseudotime trajectory mapping the differentiation form metanephric mesenchyme progenitors to mature renin-expressing JG cells (n=2,054 cells), shown by embryonic stage. Early populations with high Foxd1 expression serve as the starting point, and late populations with high Ren1/Akr1b7 expression were identified as endpoints. E-G. Feature plots visualizing Foxd1, Renin, and Akr1b7 expression levels across the entire GFP+ cell populations.

Supplemental Table 1: 

Suppl Table 1: Primer information (genotyping).