cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4540948
title: A flexible ultrasensitive optoelectronic sensor array for neuromorphic vision systems

description: This dataset contains raw optical,SEM and TEM images of the materials and devices, optoelectronic electrical transport test, and materials characterization, etc, which are related to the manuscript of A flexible ultrasensitive optoelectronic sensor array for neuromorphic vision systems.
DOI: 10.5281/zenodo.4540947
title: A flexible ultrasensitive optoelectronic sensor array for neuromorphic vision systems

description: This dataset contains raw optical,SEM and TEM images of the materials and devices, optoelectronic electrical transport test, and materials characterization, etc, which are related to the manuscript of A flexible ultrasensitive optoelectronic sensor array for neuromorphic vision systems.
DOI: 10.48428/adattar/vy1koy
title: Trial Dataset

description: Test dataset to playaround.
DOI: 10.6084/m9.figshare.14035100
title: Supplementary material_JDS_18321.docx

description: In total, 989 Brown Swiss cows and 37185 SNP were included in the analyses. Six milk protein traits were considered. Bayesian networks and structural equation modelling were used to infer relationships among the traits.<br>
DOI: 10.6084/m9.figshare.14035100.v1
title: Supplementary material_JDS_18321.docx

description: In total, 989 Brown Swiss cows and 37185 SNP were included in the analyses. Six milk protein traits were considered. Bayesian networks and structural equation modelling were used to infer relationships among the traits.<br>
DOI: 10.5281/zenodo.4541036
title: MITgcm model setup and output for "Development of adjoint-based ocean state estimation for the Amundsen and Bellingshausen Seas and ice shelf cavities using MITgcm/ECCO"

description: MITgcm model setup and output for "Development of adjoint-based ocean state estimation for the Amundsen and Bellingshausen Seas and ice shelf cavities using MITgcm/ECCO"<br> <br> <strong>(Contents)</strong><br> Here it contains<br> code.zip (code to run this simulation)<br> input.zip (input file required for this simulation)<br> run478it20.zip (output of ocean state estimates for iteration 20) <strong>(How to compile)</strong><br> To run this simulation,<br> mkdir build<br> cd build<br> /nobackup/ynakaya2/MITgcm/tools/genmake2 -rootdir=/nobackup/ynakaya2/MITgcm -of ../code2/linux_amd64_ifort+mpi_ice_nas -mpi -mods ../code2/<br> make depend<br> make adall<br> <br> <strong>(How to submit a job)</strong><br> script_run470_mitgcmad.csh is used to submit a job for running simulation.<br> script_optim478 is used for optimization jobs.<br> <br> For more info please send an email to Yoshihiro.Nakayama@lowtem.hokudai.ac.jp
description: The model code and input files are also available at https://ecco.jpl.nasa.gov/drive/files/ECCO2/LLC270/ABS_ADJOINT
DOI: 10.5281/zenodo.4541035
title: MITgcm model setup and output for "Development of adjoint-based ocean state estimation for the Amundsen and Bellingshausen Seas and ice shelf cavities using MITgcm/ECCO"

description: MITgcm model setup and output for "Development of adjoint-based ocean state estimation for the Amundsen and Bellingshausen Seas and ice shelf cavities using MITgcm/ECCO"<br> <br> <strong>(Contents)</strong><br> Here it contains<br> code.zip (code to run this simulation)<br> input.zip (input file required for this simulation)<br> run478it20.zip (output of ocean state estimates for iteration 20) <strong>(How to compile)</strong><br> To run this simulation,<br> mkdir build<br> cd build<br> /nobackup/ynakaya2/MITgcm/tools/genmake2 -rootdir=/nobackup/ynakaya2/MITgcm -of ../code2/linux_amd64_ifort+mpi_ice_nas -mpi -mods ../code2/<br> make depend<br> make adall<br> <br> <strong>(How to submit a job)</strong><br> script_run470_mitgcmad.csh is used to submit a job for running simulation.<br> script_optim478 is used for optimization jobs.<br> <br> For more info please send an email to Yoshihiro.Nakayama@lowtem.hokudai.ac.jp
description: The model code and input files are also available at https://ecco.jpl.nasa.gov/drive/files/ECCO2/LLC270/ABS_ADJOINT
DOI: 10.25646/8023
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.5525/gla.researchdata.1113
title: Global stability analysis of flexible channel flow with a hyperelastic wall

description: Data for figures in 'Global stability analysis of flexible channel flow with a hyperelastic wall'
DOI: 10.25345/c5kf7x
title: MassIVE MSV000086864 - GTPBP8 is required for mitoribosomal biogenesis and mitochondrial translation
title: GTPBP8 is required for mitoribosomal biogenesis and mitochondrial translation
DOI: 10.25345/c5fr38
title: MassIVE MSV000086865 - GTPBP8 is required for mitoribosomal biogenesis and mitochondrial translation
title: GTPBP8 is required for mitoribosomal biogenesis and mitochondrial translation
DOI: 10.6084/m9.figshare.14035202.v1
title: Data Fish Paint Tribot et al 2021

description: Multi-secular and regional trends of aquatic biodiversity in European Early Modern paintings: toward an ecological and historical significance. Anne-Sophie Tribot<sup>1,2</sup>, Daniel Faget<sup>1</sup>, Héloïse Villesèche<sup>2</sup>, Thomas Changeux<sup>2*</sup><sup>1</sup> Aix Marseille Univ, CNRS, TELEMME, Aix-en-Provence, France<sup>2</sup> Aix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France<sup>*</sup> Corresponding author: thomas.changeux@ird.fr
DOI: 10.6084/m9.figshare.14035202
title: Data Fish Paint Tribot et al 2021

description: Multi-secular and regional trends of aquatic biodiversity in European Early Modern paintings: toward an ecological and historical significance. Anne-Sophie Tribot<sup>1,2</sup>, Daniel Faget<sup>1</sup>, Héloïse Villesèche<sup>2</sup>, Thomas Changeux<sup>2*</sup><sup>1</sup> Aix Marseille Univ, CNRS, TELEMME, Aix-en-Provence, France<sup>2</sup> Aix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France<sup>*</sup> Corresponding author: thomas.changeux@ird.fr
DOI: 10.14459/2020mp1593899
title: Surrounded by the Clouds

description: Cloud datacenter to user connectivity dataset collected over RIPE Atlas. The dataset accompanies research article “Surrounded by the Cloud” accepted at The Web Conference 2021
DOI: 10.5517/cc1krx8h
title: CCDC 1452947: Experimental Crystal Structure Determination

description: Related Article: Ulrich Flörke, Enver Akin, Gerald Henkel|2016|CSD Communication|||
description: Related Article: Aziza Ahmida, Fatin M. Elmagbari, Hans Egold, Gerald Henkel|2021|Polyhedron|198|115083|doi:10.1016/j.poly.2021.115083
DOI: 10.7284/138639
title: Multibeam Echosounder data collected during research cruise FK200802 using a Kongsberg EM710 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.4541176
title: Dataset from Toso A, Castelvecchio S, Menicanti L, Volpe M, Fantini F. Prognostic value of natriuretic peptides and restrictive filling pattern before surgical ventricular restoration. J Thorac Cardiovasc Surg. 2020 Oct 15:S0022-5223(20)32827-0. doi: 10.1016/j.jtcvs.2020.09.132. Epub ahead of print. PMID: 33168168.

description: Dataset from the article Toso A, Castelvecchio S, Menicanti L, Volpe M, Fantini F. Prognostic value of natriuretic peptides and restrictive filling pattern before surgical ventricular restoration. J Thorac Cardiovasc Surg. 2020 Oct 15:S0022-5223(20)32827-0. doi: 10.1016/j.jtcvs.2020.09.132. Epub ahead of print. PMID: 33168168. <strong>Abstract</strong> <strong>Objective: </strong>Both increased natriuretic peptide levels and restrictive filling pattern (RFP) are important risk predictors in patients with heart failure. The aim of this study was to examine the role of the combined use of natriuretic peptide and RFP for the prognostic stratification of patients with ischemic cardiomyopathy undergoing surgical ventricular restoration in the Biomarker Plus study. <strong>Methods: </strong>A total of 186 patients (aged 64 ± 10 years) underwent echocardiographic study and N-terminal pro-B-type natriuretic peptide assay at baseline (before surgical ventricular restoration). Patients were divided into 4 groups depending on baseline diastolic filling pattern (RFP/no RFP) and N-terminal pro-B-type natriuretic peptide level (less than or greater than or equal to the upper tertile value of 2003 ŋg/L). RFP was defined as E/A ratio ≥2. All-cause death or heart failure hospitalizations within 36-month follow-up were analyzed. <strong>Results: </strong>Despite similar ejection fraction, volumes, and mass, the 4 groups presented distinct clinical and structural pattern of presurgical ventricular restoration ventricular remodeling and significantly different clinical outcome after surgical unloading. During follow-up, 67 patients died or were hospitalized for heart failure (36%). High N-terminal pro-B-type natriuretic peptide levels and RFP, considered individually, were significantly associated with outcome (P &lt; .0001). The combination of both was associated with the highest adjusted hazard of adverse events (hazard ratio, 3.63; 95% CI, 1.73-7.6; P &lt; .0001). <strong>Conclusions: </strong>The simultaneous use of 2 markers, 1 biological and 1 echocardiographic, may allow better prognostic stratification and characterization of the distinct structural and clinical phenotypes in a population of patients with ischemic cardiomyopathy undergoing surgical ventricular restoration. This approach could be useful in the decision-making process to guide treatment choices in patients with ischemic cardiomyopathy.
DOI: 10.5281/zenodo.4541175
title: Dataset from Toso A, Castelvecchio S, Menicanti L, Volpe M, Fantini F. Prognostic value of natriuretic peptides and restrictive filling pattern before surgical ventricular restoration. J Thorac Cardiovasc Surg. 2020 Oct 15:S0022-5223(20)32827-0. doi: 10.1016/j.jtcvs.2020.09.132. Epub ahead of print. PMID: 33168168.

description: Dataset from the article Toso A, Castelvecchio S, Menicanti L, Volpe M, Fantini F. Prognostic value of natriuretic peptides and restrictive filling pattern before surgical ventricular restoration. J Thorac Cardiovasc Surg. 2020 Oct 15:S0022-5223(20)32827-0. doi: 10.1016/j.jtcvs.2020.09.132. Epub ahead of print. PMID: 33168168. <strong>Abstract</strong> <strong>Objective: </strong>Both increased natriuretic peptide levels and restrictive filling pattern (RFP) are important risk predictors in patients with heart failure. The aim of this study was to examine the role of the combined use of natriuretic peptide and RFP for the prognostic stratification of patients with ischemic cardiomyopathy undergoing surgical ventricular restoration in the Biomarker Plus study. <strong>Methods: </strong>A total of 186 patients (aged 64 ± 10 years) underwent echocardiographic study and N-terminal pro-B-type natriuretic peptide assay at baseline (before surgical ventricular restoration). Patients were divided into 4 groups depending on baseline diastolic filling pattern (RFP/no RFP) and N-terminal pro-B-type natriuretic peptide level (less than or greater than or equal to the upper tertile value of 2003 ŋg/L). RFP was defined as E/A ratio ≥2. All-cause death or heart failure hospitalizations within 36-month follow-up were analyzed. <strong>Results: </strong>Despite similar ejection fraction, volumes, and mass, the 4 groups presented distinct clinical and structural pattern of presurgical ventricular restoration ventricular remodeling and significantly different clinical outcome after surgical unloading. During follow-up, 67 patients died or were hospitalized for heart failure (36%). High N-terminal pro-B-type natriuretic peptide levels and RFP, considered individually, were significantly associated with outcome (P &lt; .0001). The combination of both was associated with the highest adjusted hazard of adverse events (hazard ratio, 3.63; 95% CI, 1.73-7.6; P &lt; .0001). <strong>Conclusions: </strong>The simultaneous use of 2 markers, 1 biological and 1 echocardiographic, may allow better prognostic stratification and characterization of the distinct structural and clinical phenotypes in a population of patients with ischemic cardiomyopathy undergoing surgical ventricular restoration. This approach could be useful in the decision-making process to guide treatment choices in patients with ischemic cardiomyopathy.
DOI: 10.25345/c59z1b
title: MassIVE MSV000086866 - Thymic epithelial cells from WT and AB0/0 mouse model
title: Murine TEC for proteomic analyses were obtained from 3 pools of WT or AB0/0 mice, 3 mice per pool (5-6 week-old). TEC were isolated, enriched and processed through CD45+ cell-depletion as described above. CD45- cell-samples were pelleted and stored at -80 C until use. Murine CD45- TEC samples were lysed through three quick freeze/thaw cycles and the protein extraction was performed by adding RapiGestTM SF at 0.2% (w/w) according to the manufacture s protocol (Waters Corporation, Milford, MA, USA). Enzymatic digestion was conducted by adding trypsin in a ratio 1:50 (w/w) o/n and then a further aliquot in a ratio 1:100 (w/w) was added for 4 h. Each peptide mixture was desalted by Pep-Clean C-18 spin columns (Pierce Biotechnology Inc., Rockford, IL, USA), concentrated at 60 C and finally reconstituted in 0.1% formic acid. After enzymatic digestion with trypsin, samples were analyzed using nano-chromatography coupled to orbitrap mass spectrometer (LC MS/MS). Globally, 3 biological samples per condition were analyzed in technical replicates (n=2). In particular, the chromatographic separation of peptides was performed using the Eksigent nanoLC-Ultra 2D System (Eksigent, part of SCIEX Dublin, CA, USA) combined with cHiPLC- nanoflex system (Eksigent) in trap-elute mode. Peptides were eluted in 100 min with an acetonitrile gradient (mobile phase A: 0.1% formic acid in water; mobile phase A: 0.1% formic acid in acetonitrile), ionized by a nanospray ionization source (EASY-SprayTM 90 Source, Thermo Fisher Scientific, San Jose, CA, USA) and analyzed using QExactive mass spectrometer (Thermo Fisher Scientific, San Jose, CA, USA). Full mass spectra were recorded in positive ion mode in a range of 400-1600 m/z, with a resolution of 70000 FWHM (@ m/z 200) and 1 microscan per second. Each full scan was followed by 7 MS/MS events (resolution of 17,500 FWHM) generated in a data dependent manner on the top seven most abundant isotope patterns with charge &gt; 2 (isolation window of 2 m/z from the survey scan, normalized collision energy of 30 and dynamic exclusion of 30 sec).
DOI: 10.7284/138640
title: Multibeam Echosounder data collected during research cruise FK200802 using a Kongsberg EM710 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138641
title: Multibeam Echosounder data collected during research cruise FK200802 using a Kongsberg EM302 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138642
title: Multibeam Echosounder data collected during research cruise FK200802 using a Kongsberg EM302 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.14035274
title: Muslim study

description: Data on 143 countries<br>
DOI: 10.6084/m9.figshare.14035274.v1
title: Muslim study

description: Data on 143 countries<br>
DOI: 10.25345/c56796
title: MassIVE MSV000086867 - Protein profiles of extracellular vesicles from healthy preschool children born late preterm (LP) and full-term (T).
title: The isolated Evs from urine sample (from healthy preschool children born late preterm (LP) and full-term (T)) were resuspended in 0.1 M ammonium bicarbonate, pH 7.9 and were trypsinized according to procedures previously reported, using 50 microg of proteins from each sample. One microliter (about 1 micro g injected) of trypsin-digested mixtures was analyzed by nano-cromatography equipped with a cHiPLC-nanoflex system (Eksigent, AB SCIEX, USA) coupled to a Q-Exactive mass spectrometer (Thermo Fisher Scientific, USA), through a 65 min gradient of 5-45% of eluent B (eluent A, 0.1% formic acid in water; eluent B, 0.1% formic acid in acetonitrile), at a flow-rate of 300 nL/min. Full mass spectra were recorded in positive ion mode over a 400-1600 m/z range at a 70000 FWHM resolution, followed by 10 MS/MS spectra, at a resolution of 17,500 FWHM, generated in a data-dependent manner on the most abundant ions. All data generated were searched using Proteome Discoverer 2.1 platform (Thermoscientific) based on SEQUEST search engine and human protein database (70726 entries, downloaded on January 2017 from UNIPROT website, www.uniprot.gov). The obtained protein lists were aligned, normalized and then processed by means of Linear Discriminant Analysis (LDA). For assigning each subject to a specific group the alpha-value parameter was calculated according to the extracted marker proteins
DOI: 10.6084/m9.figshare.14035292
title: Supplementary Material for: Pre-Admission CHADS<sub>2</sub> and CHA<sub>2</sub>DS<sub>2</sub>-VASc Scores on Early Neurological Worsening

description: <b><i>Background:</i></b> Stroke risk scores (CHADS<sub>2</sub> and CHA<sub>2</sub>DS<sub>2</sub>-VASc) not only predict the risk of stroke in atrial fibrillation (AF) patients, but have also been associated with prognosis after stroke. <b><i>Objective:</i></b> The aim of this study was to evaluate the relationship between stroke risk scores and early neurological deterioration (END) in ischemic stroke patients with AF. <b><i>Methods:</i></b> We included consecutive ischemic stroke patients with AF admitted between January 2013 and December 2015. CHADS<sub>2</sub> and CHA<sub>2</sub>DS<sub>2</sub>-VASc scores were calculated using the established scoring system. END was defined as an increase ≥2 on the total National Institutes of Health Stroke Scale (NIHSS) score or ≥1 on the motor NIHSS score within the first 72 h of admission. <b><i>Results:</i></b> A total of 2,099 ischemic stroke patients with AF were included. In multivariable analysis, CHA<sub>2</sub>DS<sub>2</sub>-VASc score (adjusted odds ratio [aOR] = 1.17, 95% confidence interval [CI] = 1.04–1.31) was significantly associated with END after adjusting for confounders. Initial NIHSS score, use of anticoagulants, and intracranial atherosclerosis (ICAS) were also found to be closely associated with END, independent of the CHA<sub>2</sub>DS<sub>2</sub>-VASc score. Multivariable analysis stratified by the presence of ICAS demonstrated that both CHA<sub>2</sub>DS<sub>2</sub>-VASc (aOR = 1.20, 95% CI = 1.04–1.38) and CHADS<sub>2</sub> scores (aOR = 1.24, 95% CI = 1.01–1.52) were closely related to END in only patients with ICAS. In patients without ICAS, neither of the risk scores were associated with END. <b><i>Conclusions:</i></b> High CHA<sub>2</sub>DS<sub>2</sub>-VASc score was associated with END in ischemic stroke patients with AF. This close relationship is more pronounced in patients with ICAS.
DOI: 10.6084/m9.figshare.14035370
title: Behavior, biochemistry and morphology of odonates

description: This db illustrates odonate adults' mating responses, biochemistry (protein and lipid) and morphological values that correspond to animals that used one of two experimental treatments.
DOI: 10.6084/m9.figshare.14035370.v1
title: Behavior, biochemistry and morphology of odonates

description: This db illustrates odonate adults' mating responses, biochemistry (protein and lipid) and morphological values that correspond to animals that used one of two experimental treatments.
DOI: 10.5281/zenodo.4541446
title: Example Data and Models for "Atlas Alignment" Project

description: <strong>Overview</strong> This zip folder contains example data and models for "Atlas Alignment". "Atlas Alignment" is the Blue Brain toolbox to perform multimodal image registration. It includes both traditional and supervised deep learning models. <br> <strong>Included files and structure</strong> <strong>atlas_data</strong> — contains brain atlases data <strong>nissl.npy</strong> — 25 μm nissl stains of whole mouse brain <strong>annotation.npy</strong> — 25 μm brain regions atlas <strong>annotation_hierarchy.json </strong>— hierarchical tree structure of brain regions contained in annotation.npy <strong>manual_registration.h5</strong> — human expert annotations for multiple gene expression slices<br> <strong>model_weights</strong> — pre-trained keras neural network for atlas registration <strong>global.h5</strong> — weights and architecture of global network <strong>local.h5</strong> — weights and architecture of local network
description: This work was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government's ETH Board of the Swiss Federal Institutes of Technology.
DOI: 10.5281/zenodo.4541445
title: Example Data and Models for "Atlas Alignment" Project

description: <strong>Overview</strong> This zip folder contains example data and models for "Atlas Alignment". "Atlas Alignment" is the Blue Brain toolbox to perform multimodal image registration. It includes both traditional and supervised deep learning models. <br> <strong>Included files and structure</strong> <strong>atlas_data</strong> — contains brain atlases data <strong>nissl.npy</strong> — 25 μm nissl stains of whole mouse brain <strong>annotation.npy</strong> — 25 μm brain regions atlas <strong>annotation_hierarchy.json </strong>— hierarchical tree structure of brain regions contained in annotation.npy <strong>manual_registration.h5</strong> — human expert annotations for multiple gene expression slices<br> <strong>model_weights</strong> — pre-trained keras neural network for atlas registration <strong>global.h5</strong> — weights and architecture of global network <strong>local.h5</strong> — weights and architecture of local network
description: This work was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government's ETH Board of the Swiss Federal Institutes of Technology.
DOI: 10.20351/29he20091017
title: ORCA Cruise, RV Hespérides

description: ORCA Cruise (29HE20091017) carried out on the Research Vessel Hespérides in 2009