cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/3ey-f5n-5mx
title: Nigella damascena L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/qpg-5mc-8g8
title: Neslia paniculata (L.) Desv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/enx-jpm-w97
title: Nigella damascena L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/0k3-xhj-y8t
title: Nigella damascena L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/4h2-rla-4lz
title: Neslia paniculata (L.) Desv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/qck-lsd-4sh
title: Neslia paniculata (L.) Desv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/zqp-gqy-f2f
title: Oenanthe pimpinelloides L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/2b4-zzg-dpt
title: Oenanthe pimpinelloides L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/8p2-47r-jb1
title: Nigella damascena L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5281/zenodo.18211354
title: Data and custom code for: "Spin-correlated radical pair dynamics controlled by magnetic resonance in vivo"

description: Data and custom code for: "Spin-correlated radical pair dynamics controlled by magnetic resonance in vivo"

Files Fig_2_data.zip and Fig_3_data.zip contain data (.csv format) for generating figures shown in Figs. 2 and 3 in the manuscript. Note that the datasets for panel 2A are numbered in decreasing order of RF amplitude.  




Fig_4_data.zip contains data relevant for Fig. 4 in two folders, Fig_4ABC and Fig_4DEF for the upper and lower panels of the figure respectively.  Each folder contains two .npy files with an array of images (as numpy arrays) over the course of the experiment, one with the original images, and one with the images divided into blocks for analysis as described in the manuscript text and SI.  The .npz files contain the RYDMR and MFE maps obtained from analysis of the blocked image sequence. The .csv files in Fig_4_data.zip contain example analysis results (similar to the data shown in Figs. 4 A and D) from camera counts integrated from within a circle with radius of 10 pixels (in the original images). The center coordinates of the circles are (221,76) for RYDMR_wrmSc.csv and (81,76) for RYDMR_wrmSc_control.csv. These may be very slightly shifted relative to the coordinates used for the data in the main text, but this does not result in significant changes to the results or interpretation.  The first column in each .csv file is the time (t) in seconds relative to the start of the B_0 scans. Corresponding B_0 values for two scans are given in column 2. The remaining columns contain the fluorescence data (normalized to the camera counts measured at t=0), the estimate bleaching function (see SI in the manuscript), the fluorescence with the bleaching function subtracted, and the final fit data used to estimate the MFE and RYDMR. 

Fig4ghi.zip conatin data relevant for the Fig. 4 g, h, and i in the revised manuscipt. Yellow_only.zip contains data relevant to ED Fig 2. Revival.zip conatins MFE and RYDMR data from 3 different nematodes that were revived after the experiment and could grow and reproduce. 

Raw_data.zip contains raw data for C. Elegans experiments shown in Fig 4 g, and h, ED Figures 2 and 3, and from 3 revivial experiments. The files in this folder can be called and analyzed from the Jupyter notebooks Analysis_code_MFE.ipynb and Analysis_code_RYDMR.ipynb that contain the custom code used for fitting and analysis of MFE data. The document Analysis code descrption provides more details about how to use the code.   

Sequences.zip contains all DNA and protein sequences.
DOI: 10.5281/zenodo.15321800
title: Data and custom code for: "Spin-correlated radical pair dynamics controlled by magnetic resonance in vivo"

description: Data and custom code for: "Spin-correlated radical pair dynamics controlled by magnetic resonance in vivo"

Files Fig_2_data.zip and Fig_3_data.zip contain data (.csv format) for generating figures shown in Figs. 2 and 3 in the manuscript. Note that the datasets for panel 2A are numbered in decreasing order of RF amplitude.  




Fig_4_data.zip contains data relevant for Fig. 4 in two folders, Fig_4ABC and Fig_4DEF for the upper and lower panels of the figure respectively.  Each folder contains two .npy files with an array of images (as numpy arrays) over the course of the experiment, one with the original images, and one with the images divided into blocks for analysis as described in the manuscript text and SI.  The .npz files contain the RYDMR and MFE maps obtained from analysis of the blocked image sequence. The .csv files in Fig_4_data.zip contain example analysis results (similar to the data shown in Figs. 4 A and D) from camera counts integrated from within a circle with radius of 10 pixels (in the original images). The center coordinates of the circles are (221,76) for RYDMR_wrmSc.csv and (81,76) for RYDMR_wrmSc_control.csv. These may be very slightly shifted relative to the coordinates used for the data in the main text, but this does not result in significant changes to the results or interpretation.  The first column in each .csv file is the time (t) in seconds relative to the start of the B_0 scans. Corresponding B_0 values for two scans are given in column 2. The remaining columns contain the fluorescence data (normalized to the camera counts measured at t=0), the estimate bleaching function (see SI in the manuscript), the fluorescence with the bleaching function subtracted, and the final fit data used to estimate the MFE and RYDMR. 

Fig4ghi.zip conatin data relevant for the Fig. 4 g, h, and i in the revised manuscipt. Yellow_only.zip contains data relevant to ED Fig 2. Revival.zip conatins MFE and RYDMR data from 3 different nematodes that were revived after the experiment and could grow and reproduce. 

Raw_data.zip contains raw data for C. Elegans experiments shown in Fig 4 g, and h, ED Figures 2 and 3, and from 3 revivial experiments. The files in this folder can be called and analyzed from the Jupyter notebooks Analysis_code_MFE.ipynb and Analysis_code_RYDMR.ipynb that contain the custom code used for fitting and analysis of MFE data. The document Analysis code descrption provides more details about how to use the code.   

Sequences.zip contains all DNA and protein sequences.
DOI: 10.15468/dl.ukrwzz
title: Occurrence Download

description: A dataset containing 167082 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hyla Laurenti, 1768"
 ]
}

 The dataset includes 167082 records from 1067 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122859-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3px4x
title: Occurrence Download

description: A dataset containing 203250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((8.35473 37.27393,16.95148 37.27393,16.95148 43.34984,12.33445 43.34984,8.35473 43.34984,8.35473 37.27393))",
 "HasGeospatialIssue is false",
 "Year is 2020"
 ]
}

 The dataset includes 203250 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169094-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kyw4ym
title: Occurrence Download

description: A dataset containing 2139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA.16.211_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 1992-2022"
 ]
}

 The dataset includes 2139 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122902-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58gkv7
title: Occurrence Download

description: A dataset containing 289350614 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 289350614 records from 9472 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047938-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6p4ab
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heterosiphonia japonica",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024454-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/3ovsmq
title: Replication Data for "Eliminating hunger in a world serious about climate mitigation"

description: Data used in "Eliminating hunger in a world serious about climate mitigation", PNAS 2025
DOI: 10.15468/dl.gjtrdy
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACI1461"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024455-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gj42fb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus mykiss",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024458-250717081556266/datasets/export for details.
DOI: 10.15468/dl.6hxpwe
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heterosiphonia japonica",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 42 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024456-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zv9t4x
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus mykiss",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024457-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4v9k2
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus mykiss",
 "Country is Israel",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024459-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tctjf3
title: Occurrence Download

description: A dataset containing 1933 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wedelia calycina"
 ]
}

 The dataset includes 1933 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024460-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7edq9v
title: Occurrence Download

description: A dataset containing 969 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Chile, Argentina)",
 "OccurrenceStatus is Present",
 "TaxonKey is Percichthys trucha"
 ]
}

 The dataset includes 969 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024461-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16290210
title: Tr 16EV
DOI: 10.5281/zenodo.16290211
title: Tr 16EV
DOI: 10.15468/dl.m4tkd7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mangifera indica",
 "Country is Libya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024462-250717081556266/datasets/export for details.
DOI: 10.15468/dl.vwhykh
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mangifera indica",
 "Country is Maldives",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024463-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.adtsv2
title: Occurrence Download

description: A dataset containing 18819 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Continent is South America",
 "Country is Brazil",
 "GadmGid is one of (BRA.25.584_2, BRA.25.643_2)",
 "Geometry POLYGON((-162 -40,-21 -40,-21 9,-162 9,-162 -40))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Coordinate reprojected, Continent derived from coordinates, Taxon match higher rank, The taxon concept ID was not found in the checklist, Occurrence status inferred from individual count, Different owner institution, Institution collection mismatch, Collection match none, Institution match fuzzy, Institution match none)",
 "TaxonKey is one of (Prochilodus lineatus, Animalia)"
 ]
}

 The dataset includes 18819 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024464-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16290518
title: Nexus engine

description: Description:

The NexisSignalEngine is an original, production-grade signal analysis engine designed to advance the state of explainable AI (XAI), security auditing, and ethical reasoning. This framework uniquely combines deterministic cryptographic hashing, seeded vector rotations, harmonic FFT analysis, and hybrid symbolic-statistical evaluation through distinct agent-based perspectives.

 

Core Features:

 



Deterministic Analysis: Each signal is hashed and used to seed all numeric operations, enabling full auditability and forensic reproducibility.

Multi-Agent Perspectives: Input is processed through three parallel cognitive perspectives (“Colleen,” “Luke,” “Kellyanne”), each running its own mathematical, ethical, or harmonic analysis for rich, multi-lens evaluation.

Hybrid Reasoning: Integrates symbolic (ethics, risk, virtue tagging) and statistical (entropy, FFT harmonics, tensor entanglement) methods for robust signal integrity checks.

Secure, Tamper-Evident Memory: All input/output records are stored with file-locking and periodic file rotation. Archive logs are timestamped and pruned for compliance and chain-of-custody requirements.

Configurable and Hardened: All core configurations (risk/virtue/ethics terms) are loaded and validated with full key enforcement and fallback protections.

Safe and Attack-Resistant: Memory growth is bounded, inputs are length-capped, FFT results are normalized, and deterministic RNG prevents adversarial replay attacks.


 

 

Intended Use:

NexisSignalEngine is intended for researchers, developers, and auditors who require a trustworthy, transparent, and reproducible framework for:

 



Detecting, auditing, and adapting to pre-corruption signals

Validating ethical and risk compliance in autonomous AI systems

Recording, tracing, and justifying real-world signal decisions


 

 

Provenance and Authorship:

This architecture, including its signal-seeded deterministic vector logic, agent-based multi-perspective evaluation, and memory rotation protocol, is the original work of Jonathan Harrison (Raiff1982). This release serves as a timestamped, tamper-evident record of innovation and prior art.

 

Keywords:

Explainable AI, Signal Reasoning, Cognitive Agents, Deterministic Audit, Entropy Detection, Harmonic Analysis, AI Ethics, Provenance, Memory Rotation, Symbolic Reasoning
DOI: 10.15468/dl.rwkysa
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ondatra zibethicus",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 41 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024465-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vw5fzr
title: Occurrence Download

description: A dataset containing 2735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Grus grus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 2735 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024466-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yddjtd
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Grus grus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024469-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dh7p9y
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AER1439"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024468-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ndzv7
title: Occurrence Download

description: A dataset containing 1276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lamiastrum galeobdolon",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1276 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024470-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8nfkp6
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lamiastrum galeobdolon",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 125 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024471-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azeqhw
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus mykiss",
 "Country is Lesotho",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024474-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4u88w6
title: Occurrence Download

description: A dataset containing 1053 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus mykiss",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1053 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024472-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/wtd4hjfr9n
title: A mycovirus shape insect-pathogenic and non-pathogenic phenotypes in a fungal biocontrol agent

description: The attached Excel file contains:
• The raw data obtained during the experiments.
• The operations and formulas used to generate the graphs presented in the manuscript.
• The results of the statistical analyses performed to evaluate differences between treatments and/or strains.
DOI: 10.17632/wtd4hjfr9n.1
title: A mycovirus shape insect-pathogenic and non-pathogenic phenotypes in a fungal biocontrol agent

description: The attached Excel file contains:
• The raw data obtained during the experiments.
• The operations and formulas used to generate the graphs presented in the manuscript.
• The results of the statistical analyses performed to evaluate differences between treatments and/or strains.