cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/tz6yvbhzt2
title: Original data of phylogenetic analysis, cloning, expression, purification, specificity and biochemical characteristics of the identified chondroitin sulfate/dermatan sulfate 4-O-endosulfatase (endoBI4SF)

description: This dataset includes the raw data of phylogenetic analysis, cloning, expression, purification, specificity and biochemical characteristics of the identified chondroitin sulfate/dermatan sulfate 4-O-endosulfatase (endoBI4SF) related to the published paper "A novel 4-O-endosulfatase with high potential for the structure-function studies of chondroitin sulfate/dermatan sulfate".
DOI: 10.6084/m9.figshare.20934475.v1
title: Caecal microbial communities, functional diversity, and metabolic pathways in Ross 308 broiler chickens fed with diets containing different levels of Marama (Tylosema esculentum) bean meal

description: The caecum of a chicken harbours complex microbial communities that play vital roles in feed digestion, nutrient absorption, and bird health. Understanding the caecal microbial communities could help to improve feed utilisation efficiency and chicken product quality and, ultimately, deliver sustainable poultry production systems. Thus, this study assessed the caecal microbial communities and their functional diversity and metabolic pathways in broilers reared on diets containing different levels of marama (Tylosema esculentum) bean meal (MBM). A total of 350, day-old Ross 308 broiler chicks were randomly allocated to 5 dietary treatments formulated as follows: a soybean-based standard broiler diet (Con_BC); Con_BC in which soybean products were substituted with 7 (M7_BC), 14 (M14_BC), 21 (M21_BC), and 28 % (M28_BC) MBM. The dietary treatments were distributed to 35 replicate pens (10 birds each). After 42 days of feeding, the birds were slaughtered and thereafter caecal samples were collected from each replicate pen. Subsequently, the samples were pooled per treatment group for metagenomics sequence analysis. The results revealed that bacteria domain (99.11 %), with Bacteroides, Firmicutes and Proteobacteria being the most prominent phyla (48.28, 47.52 and 4.86 %, respectively). Out of 846 genera obtained, the most abundant genera were Bacteroides, Clostridium, Alistipes, Faecalibacterium, Ruminococcus, Eubacterium, and Parabacterioides. At genus level, the alpha-diversity showed significant (P &lt; 0.05) difference across all the treatment groups. Based on the SEED subsystem, 28 functional categories that include carbohydrates (14.65 %), clustering-based subsystems (13.01 %), protein metabolism (10.12 %) were obtained. The KO analysis revealed 183 endogenous pathways, with 100 functional pathways associated with metabolism category. Moreover, 15 pathways associated with carbohydrates were observed. The glycolysis/gluconeogenesis, galactose metabolism, pyruvate metabolism (15.32, 12.63 and 11.93 %) were the most abundant pathways. Moreover, glycoside hydrolases (GH1, GH5, and GH13) were the most prominent carbohydrates-active enzymes. Therefore, results presented in this study suggest that dietary MB meal can improve microbial communities and their functional and metabolic pathways, which may help to increase poultry production.
DOI: 10.6084/m9.figshare.24129774.v1
title: Supplementary Data for Dong et al. "Wastewater-influenced estuaries are characterized by disproportionately high nitrous oxide emissions but overestimated IPCC emission factor"

description: Supplementary data for the article "Wastewater-influenced estuaries are characterized by disproportionately high nitrous oxide emissions but overestimated IPCC emission factor". This dataset contains the following four files:Supplementary Data 1: Real-time N<sub>2</sub>O concentrations and environmental parameters from the high-resolution monitoring campaign in the Pearl River Estuary (PRE).Supplementary Data 2: Summary of N<sub>2</sub>O emissions in estuaries globally synthesized from previous studies.Supplementary Data 3: Statistics of wastewater nitrogen discharge in 83 estuaries globally.Supplementary Data Reference: Reference cited in Supplementary Data 2 and Supplementary Data 3.
DOI: 10.6084/m9.figshare.28916564.v1
title: 1868_1877_tsunamigrams

description: These files contain the corrected sea level time series (marigrams) used in the study "Large size of two 19th-century Chile–Peru earthquakes inferred from trans-Pacific tsunami records", published in Geophysical Research Letters by Carvajal et al.
DOI: 10.17632/djsyndvs3r
title: Data for: Evaluation of patient-specific cranial implant design using finite elemental analysis

description: This study aims to assess the load-bearing capacity of three patient-speciﬁc cranial implants. Although various studies exist that have analysed the mechanical behaviour of cranial implants, little attention is given to the design evaluation of a ceramic-titanium (CeTi) implant. The CeTi implant consists of a solid part in the centre of the implant and a scaffold at the border, both made of the Ti6Al4V-alloy. In the scaffold structure, HydroSet® is injected and sculpted. In order to better understand the mechanical behaviour of the CeTi implant, both tangential and axial screws are compared with a PEEK implant. Six computational models are developed in Abaqus/CAE. For each patient-speciﬁc implant, a global as well as a local model is constructed. The global models are subjected to two static loading conditions representing an impact load and the intracranial pressure. Nodal boundary conditions are imposed on the local models which represent the two aforementioned loading conditions. The global models are used to evaluate the location and magnitude of maximum Von Mises stress and displacement, whereas the local models offer the possibility to evaluate the Max Principal Stress in more detail. Hence, this work offers a broad view of the biomechanical properties of the cranial implants as different stress criteria are evaluated. Interaction properties are assigned between the cranial implant and neurocranium in order to mimic the bioﬁdelic situation. Linear elastic and isotropic material properties are implemented for the various models. The results of the different analyses show that the PEEK cranial implant offers a less good brain and neurocranial protection due to its high ﬂexibility and local peak stresses at the bone-screw interface. The CeTi implants are able to evenly distribute the stresses along the interface and thus reduce the risk for neurocranial fracture. The scaffold structure at the border of the implant reduces stress shielding and enhances bone ingrowth. Moreover, brain injuries are less likely to occur as the CeTi implant has a small deﬂection. The design evaluation presented in this work can further be used for design optimization purposes.
DOI: 10.17632/wtrhr5j39j
title: Duo: A general program for calculating spectra of diatomic molecules

description: Abstract Duo is a general, user-friendly program for computing rotational, rovibrational and rovibronic spectra of diatomic molecules. Duo solves the Schrödinger equation for the motion of the nuclei not only for the simple case of uncoupled, isolated electronic states (typical for the ground state of closed-shell diatomics) but also for the general case of an arbitrary number and type of couplings between electronic states (typical for open-shell diatomics and excited states). Possible couplings incl... Title of program: DUO Catalogue Id: AEZJ_v1_0 Nature of problem Solving the Schrödinger equation for the nuclear motion of a diatomic molecule with an arbitrary number and type of couplings between electronic states. Versions of this program held in the CPC repository in Mendeley Data AEZJ_v1_0; DUO; 10.1016/j.cpc.2015.12.021 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.29037941.v1
title: Ecological Patterns and Composition of Plant Diversity in Grasslands of Deccan Plateau, India

description: This dataset was used for the analysis of grassland plant diversity in the Vikarabad district (Telangana) of the Deccan Plateau, India, collected during the post-monsoon season of 2019. The study employs quantitative and multivariate methods to analyze species composition and ecological patterns across four distinct forest zones. Please refer 'Read Me First' for details.
DOI: 10.17632/sjkbdbxgwb
title: Data for - Commuting, Transport Infrastructure, and Gender: Evidence from Indian Metros

description: This data folder contains de-identified data of the survey and the accompanying do files contain all the codes used for generating variables and the different Tables and figures in the study titled - Commuting, Transport Infrastructure, and Gender: Evidence from Indian Metros.
DOI: 10.6084/m9.figshare.29043149.v1
title: ISOmetrics

description: The files support for evaluate the approach of Geolocated AR
DOI: 10.17632/tprkv4x3hv
title: Consumer Credit Conditions

description: New consumer credit measures of available credit, delinquency, and credit access and a composite index all built from deidentified consumer credit record data, the Consumer Financial Protection Bureau's Consumer Credit Index Panel (CCIP). 

Data are quarterly and available nationally (mean and 10th, 25th, 50th, 75th, and 90th percentiles) and for several demographic subgroups (age, credit score, and neighborhood characteristics).

Brennecke, Claire and Bucks, Brian and Gibbs, Christa and Kambara, Michelle and LeBuhn, Samantha and Ratcliffe, Caroline, Measuring Consumer Credit Conditions (April 17, 2025). Consumer Financial Protection Bureau Office of Research Working Paper No. 25-05, Available at SSRN: https://ssrn.com/abstract=5222415 or http://dx.doi.org/10.2139/ssrn.5222415
DOI: 10.4121/13692295.v1
title: PitchVAWT Zero Degree Pitch Velocity Fields and Flux Data underlying the paper: Estimation of blade loads for a variable pitch vertical axis wind turbine from particle image velocimetry

description: Velocity fields and flux load calculations for zero pitch measurement of PitchVAWT at tip speed ratio of 4 with wind speed of 4 meter per second.<br>
DOI: 10.6084/m9.figshare.16772812.v1
title: Code and Data for "Physics-driven coarse-grained model for biomolecular phase separation with near-quantitative accuracy"

description: This file is part of the supporting data for the manuscript 'Physics-driven coarse-grained model for biomolecular phase separation with near-quantitative accuracy', and contains scripts and code for running all-atom and coarse-grained simulations of proteins described in the manuscript.<br>The included README file outlines the structure of the archive and contains Lammps installation instructions for running the remaining code supplied.<br>There are five directories in this archive. Four of these correspond to figures in the results section of the manuscript, and each one contains a separate README file detailing its contents. They include Gromacs and Lammps scripts with example simulation set-ups to run simulations corresponding to figures 2 [potentials of mean force of all-atom models], 4 [radius of gyration simulations of coarse-grained models], 5 [direct-coexistence simulations used to determine the phase diagrams] and 6 [multiphase equilibria] of the manuscript. The directories contain input scripts and corresponding parameter and simulation configuration files, as well as example simulation output to benchmark against.<br>The final directory, 'all-model-parameters', contains Lammps parameter files not only for the Mpipi potential, but also for all the other models we have benchmarked in the paper. These parameter files can be used instead of the Mpipi parameters in the simulations provided in the other directories.
DOI: 10.6084/m9.figshare.19179308.v1
title: data_gtr_mplus

description: Mplus formatted survey data for study on waterfowl hunters in Arkansas.
DOI: 10.6084/m9.figshare.21397476.v2
title: Output

description: Sample output file of ScRAT for predicting clinical phenotypes of patients in SC4.
DOI: 10.6084/m9.figshare.3437285.v2
title: The Dehumanization of women in the W.S Rendra’s blues untuk bonnie Antology

description: Many social problems expressed by Rendra in the poetry anthology Blues Untuk Bonnie, such as matters of love and lives of women. Rendra exposing this problem because he loved women, especially his mother. Women’s life issues of his concern was the dehumanization of women. The dehumanization of women in this anthology discussed with sociological theory of literature and semiotics. The method used is qualitative research method in the form of a literature study. The results showed that Rendra discloses various forms of dehumanization experienced by the women, especially in the sexual and other social services. Dehumanization of women committed by officials or people who have a lot of money. Rendra explained that concern with proper diction so that the message conveyed easily understood by the reader. In semiotics, the meaning behind the dehumanization of women is society should be able to appreciate women as human beings. Sociologically, the dehumanization of women caused by the powerlessness of women, both economically and physically.
DOI: 10.17632/yg34nv9mx4
title: Data for: The Determinants of Green Credit and Its Impact on the Performance of Chinese Banks
DOI: 10.6084/m9.figshare.21762803.v1
title: nrITS, mtSSU, RPB2 and LNS2 alignments of specimens of Lichina species

description: There are the four alignments used in the work by Garrido-Benavent et al. entitled: Ocean crossers: a tale of disjunctions and speciation in the dwarf-fruticose <em>Lichina</em> (lichenized <em>Ascomycota</em>). The alignments were carried out with MAFFT as implemented in Geneious
DOI: 10.6084/m9.figshare.27644664.v2
title: HMRLBA datasets

description: HMRLBA datasets
DOI: 10.6084/m9.figshare.21655364.v3
title: Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum

description: genome sequence and annotations
DOI: 10.6084/m9.figshare.23658450.v4
title: Act2Loc_Data&Code

description: Data and code for manuscript titled "<b>Act2Loc: A Synthetic Trajectory Generation Method by Combining Machine Learning and Mechanistic Models</b>".
DOI: 10.6084/m9.figshare.28532930.v1
title: k_srme

description: k_srme test results( last update on 3.4 / 2025)
DOI: 10.17632/k8pmzkr996
title: Social Sustainability

description: Social sustainability is one of the three interrelated components of sustainability. For something to be truly sustainable, there must be equal consideration of social (people), environmental (planet), and economic (profit) factors. The social component of sustainability, at its most basic level, concerns the rights and wellbeing of all humans. In a business context, social sustainability encompasses a range of topics, including workplace diversity, fair labor practices, and positive community engagement. Social sustainability is a long-term, ongoing mission of ensuring social conditions and outcomes are optimized for generations to come.
DOI: 10.6084/m9.figshare.29036273.v1
title: <b>M2ST: Dissecting spatial domains in spatial transcriptomics by a masked graph attention autoencoder</b>

description: M2ST is implemented in the pytorch framework (tested on Python 3.9.19). We recommend that users run M2ST on CUDA.Tutorial: 1. Download the M2ST_F.py and gat_conv2.py.2. Tutorial for domain identification on 10x Visium human dorsolateral prefrontal cortex (DLPFC) dataset can be found: Train_151674.ipynb.3. The datasets for the Tutorial Train_151674.ipynb can be found in the data/151674 Folder.4. The domain identification results of the Tutorial Train_151674.ipynb can be found in the data/result Folder.
DOI: 10.6084/m9.figshare.8061914.v1
title: ANTs_files_for_mni_icbm152_nlin_sym_09a

description: ANTs processing files for use with the MNI ICBM152 symmetric template
DOI: 10.6084/m9.figshare.16553751.v1
title: scvi-citeseq.h5ad

description: H5AD file created by following the scvi-tools totalVI tutorial
DOI: 10.6084/m9.figshare.23720961.v1
title: Kidney Dataset

description: This dataset is taken from McGilchrist and Aisbett (1991). It describes the first and second recurrence times of infection in kidney patients together with information on risk variables such as age, sex, and disease type. <br> Source <br> McGilchrist, C. A., & Aisbett, C. W. (1991). Regression with frailty in survival analysis. <em>Biometrics</em>, 47(2), 461-466
DOI: 10.6084/m9.figshare.29039213.v1
title: List of Figures – Research Data for Comparative Analysis of Weld Penetration on SS304L Using TIG, A-TIG, FBIG, and FZ-TIG Processes

description: List of Figures – Research Data for Comparative Analysis of Weld Penetration on SS304L Using TIG, A-TIG, FBIG, and FZ-TIG Processes by Darshil Pithva for Science and Technology of Welding and Joining
DOI: 10.6084/m9.figshare.19608594.v2
title: Projecting 1 km-grid population distributions from 2020 to 2100 globally under shared socioeconomic pathways

description: Spatially explicit population grids can play an important role in climate change, resource management, sustainable development, and other fields. Several gridded datasets already exist, but global data, especially high-resolution data on future populations, are largely lacking. Based on the WorldPop dataset, we present a global gridded population dataset covering 248 countries or areas at 30 arc-seconds (approximately 1 km) spatial resolution with five-year intervals for the period 2020–2100 by implementing random forest (RF) algorithm. Our dataset is quantitatively consistent with the shared socioeconomic pathways (SSPs) national population. The spatially explicit population grid we predicted in this study is validated by comparison with the WorldPop dataset at both the sub-national and grid level. A total of 3,569 provinces (almost all provinces on the globe) and more than 480 thousand grids are verified, and the results show that our dataset can serve as an input for predictive research in various fields.
DOI: 10.6084/m9.figshare.7309625.v1
title: Cross-mappability manuscript data

description: This dataset contains required files to reproduce results in the cross-mappability manuscript. [Note: data from GTEx and DGN still need to be downloaded separately.]
DOI: 10.6084/m9.figshare.9335069.v1
title: Diversity and distributional patterns of aroids (Alismatales: Araceae) along an elevational gradient in Darién, Panama

description: The family Araceae (aroids) represents an ecologically important and diverse group of plants in Panama, represented by 25 genera, 615 species, of which 277 (45%) are considered endemic. The aim of this study is to analyse the diversity and distributional patterns of aroids along an elevation gradient in the species-rich forests of Darién, Panama. We confined our study to three study sites, selected across gradients of elevation (ranges): 100–300 , 500–700 and 1100–1300 m. We recorded 3187 specimens, of which 397 were terrestrials, 637 epiphytes and 2153 nomadic vines, distributed in 10 genera and 61 species. Our study shows that the most diverse areas were those between 500 and 700 m and the highest abundance were measured at 1100–1300 m. The epiphytic aroids displayed greater species richness and abundance at 1100–1300 m; the nomadic vines had greater richness between 500 and 700 m and greater abundance from 100 to 300 m. Similarly, terrestrial aroids showed greater richness at 500–700 m, and exhibited abundance values similar to that of the epiphytes. We measured a high degree of aroid species turnover along the elevation gradient and some genera and species (many being endemic) appeared strongly associated with sites at specific elevations.
DOI: 10.6084/m9.figshare.24161073.v1
title: DNA methylation differences within <i>INS</i>, <i>PTPN22</i> and <i>IL2RA</i> promoters in lymphocyte subsets in children with type 1 diabetes and controls

description: We elucidated the effect of four known T1D-susceptibility associated single nucleotide polymorphism (SNP) markers in three genes (rs12722495 and rs2104286 in <i>IL2RA</i>, rs689 in <i>INS</i> and rs2476601 in <i>PTPN22</i>) on CpG site methylation of their proximal promoters in different lymphocyte subsets using pyrosequencing. The study cohort comprised 25 children with newly diagnosed T1D and 25 matched healthy controls. The rs689 SNP was associated with methylation at four CpG sites in <i>INS</i> promoter: −234, −206, −102 and −69. At all four CpG sites, the susceptibility genotype AA was associated with a higher methylation level compared to the other genotypes. We also found an association between rs12722495 and methylation at CpG sites −373 and −356 in <i>IL2RA</i> promoter in B cells, where the risk genotype AA was associated with lower methylation level compared to the AG genotype. The other SNPs analyzed did not demonstrate significant associations with CpG site methylation in the examined genes. Additionally, we compared the methylation between children with T1D and controls, and found statistically significant methylation differences at CpG −135 in <i>INS</i> in CD8+ T cells (<i>p</i> = 0.034), where T1D patients had a slightly higher methylation compared to controls (87.3 ± 7.2 vs. 78.8 ± 8.9). At the other CpG sites analyzed, the methylation was similar. Our results not only confirm the association between <i>INS</i> methylation and rs689 discovered in earlier studies but also report this association in sorted immune cells. We also report an association between rs12722495 and <i>IL2RA</i> promoter methylation in B cells. These results suggest that at least part of the genetic effect of rs689 and rs12722495 on T1D pathogenesis may be conveyed by DNA methylation.
DOI: 10.6084/m9.figshare.27369447.v1
title: Stable Compressible Liquids Made of Hierarchical MOF Nanocrystals

description: Source data for Figures in the manuscript and SI
DOI: 10.6084/m9.figshare.23635446.v1
title: Increased hydraulic risk in assemblages of woody plant species predicts spatial patterns of drought-induced mortality

description: Minimum dataset required to replicate analyses in the paper titled: Increased hydraulic risk in assemblages of woody plant species predicts spatial patterns of drought-induced mortality.
DOI: 10.17632/2mm5gmwdfc
title: Video of String-hanging Technique

description: This video is a video used to demonstrate String-hanging Technique.
DOI: 10.6084/m9.figshare.1309389.v1
title: Premios de Publicidad Colombia 2012/2013

description: Listado de premios recibidos por las agencias de publicidad colombianas en los años 2012 y 2013.
DOI: 10.6084/m9.figshare.28877480.v1
title: <b>An ATP-binding cassette subfamily C is crucial for flavonoid sequestration in the domestic silkworm, </b><b><i>Bombyx mori</i></b>

description: S1 Fig. Phylogenetic tree of lepidopteran-wide orthologous proteins of <i>Gc</i>-coded ABCCs.(A) A maximum likelihood-inferred phylogenetic tree of lepidopteran-wide orthologous proteins of <i>Gc</i>-coded ABCC transporters. Unreliable nodes with bootstrap values (bootstrap trials = 100) under 90 are shown as multi-branching nodes. The tree was rooted using <i>Arabidopsis</i> ABCB1 as an outgroup. Labels of <i>B.mori</i> <i>Gc</i>-coded ABCCS are highlighted by red coloring. (B) Species tree of Lepidoptera drawn/constructed regarding a previous report (Kawahara <i>et al</i>., 2019)<br>S1 Table. Primers used in the experiments.
DOI: 10.6084/m9.figshare.7223612.v1
title: Groundwater geochemistry data in Jianghan Plain

description: Long-term (1992-2014) monitoring data of groundwater geochemistry in Jianghan Plain from the Geological Environmental Center of Hubei Province, China used in:<br>Yang J., Ye M., Tang Z., Song X., and Pei Y.(unpublished) A Cluster-Based Method for Understanding Spatial and Temporal Patterns and Controlling Factors of Groundwater Geochemistry in a Regional Aquifer.<br><br>