cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/xj636ftgff.1
title: Melanoma of Unknown Primary (MUP) Monocentric Retrospectivr Study

description: 173 consecutive patients with a diagnosis of MUP referring to the Melanoma and Sarcoma Clinic of the Veneto Institute of Oncology (IOV) and the Department of Surgery Oncology and Gastroenterology (DISCOG) of the University of Padua (Italy) between 1985 and 2018 were considered for inclusion in this retrospective cohort study. 127 MUP cases were included in this study according with Das Gupta’s criteria. Continuous data were expressed as median and interquartile range (IQR). The association between medical treatments and tumor stage was evaluated using Fisher’s exact test. Survival curves were calculated using Kaplan-Meier method.
DOI: 10.17632/kfbcpxgdr9.2
title: De novo transcriptome assembly and functional annotation of the Atlantic bluefin tuna (Thunnus thynnus) larval stage

description: De novo transcriptome assembly and functional annotation of the Atlantic bluefin tuna larval stage. The dataset (Illumina HiSeq 2000, 100bp paired-end) was downloaded from the NCBI Sequence Read Archive (SRA Accession number: SRR1536893; BioProject PRJNA252566) and generated from a pool of several developmental stages (0 days post hatch - dph, 2dph, 10dph, 15dhp, 20dph).
DOI: 10.17632/38nyzyt9bz.3
title: COVID-CQ

description: We report on the preparation of a stance data set, called COVID-CQ, for user-generated content on Twitter in the context of the COVID-19 pandemic. Particularly, we investigated more than 14 thousand tweets and annotated the opinions of the tweet initiators regarding the use of "Chloroquine" and "Hydroxychloroquine" for the treatment or prevention of the coronavirus. In our annotation procedure, each annotator was asked to annotate the individual tweets as "Against", "Favor" or "Neutral/None" for the unproven claim of "Cchloroquine/hydroxychloroquine is a cure for the novel coronavirus". We are aware that some of the tweets are removed from Twitter. If you want to access those deleted tweet items and/or have any trouble related to hydrating, feel free to reach out to us. Email addresses: ece.mutlu@ucf.edu, Toktam.Oghaz@ucf.edu, Jasser.Jasser@ucf.edu
DOI: 10.17632/tz6w4thtkg.2
title: Does ASMR Have an Effect on Increased Levels of Anxiety?

description: This survey looked into whether people who experience and watch ASMR feel that their anxiety levels are either decreased or increased after watching. There is not a lot of research surrounding the topic of ASMR so this study aims to bring more research onto a previously almost non-researched topic.
DOI: 10.17632/5fwk9xrtbx.1
title: Complete Genome Sequence of marine yeast Wickerhamomyces anomalus isolated from Indian coast

description: The de novo genome of a unique marine yeast, Wickerhamomyces anomalus isolated from seaweed along Indian coast is presented. The genome assembly was carried out using MaSurCA assembler that generated a data size ~14.3 mb from short and long reads obtained from Illumina Hiseq 4000 and GridION-X5 respectively. This assembled genome files were used for predicting genes using Augustus gene prediction tool that reported 6720 genes and proteins. The gene sequences were used for metabolic pathway analysis using KAAS database. The protein sequences file was used for secondary analysis predict the presence of signal peptides using SignalP tool, predicting protein family, domains using Pfam tool and prediction of transmembrane helices in proteins using TMHMM tool.
DOI: 10.17632/3n6wr3kkbx.1
title: On The Question Of The Relationship Between The Rotational Motion Of Molecules And The Alternation Of Properties In Homological Series. Additional materials for the article

description: The data contains: 1) Calculation of the optimized coordinates of n-alkanes by the PBE method using the 6-311++G(2d,2p) basis set; 2) Calculation of the moments of inertia of n-alkanes using optimized coordinates; 3) Theoretical calculation of moments of inertia for carbon chains.
DOI: 10.17632/y9h89fvfwf.1
title: Time_to_Breastfeeding_KATH_Kumasi

description: This is a dataset obtained from observing time to breastfeeding among mother pairs at KATH, Kumasi, Ghana
DOI: 10.17632/2jm6h6m9tz.1
title: Upregulation of antioxidant capacity and nucleotide precursor availability suffices for oncogenic transformation-YZhang et al., Western Blot Images
DOI: 10.17632/km23j2bxwf.1
title: An open-source, automated, gas sampling peripheral for laboratory incubation experiments

description: Spectroscopic instruments are becoming increasingly popular for measuring the isotopic composition and fluxes of a wide variety of gases in both field and laboratory experiments. The popularity of these instruments has created a need for automated multiplexers compatible with the equipment. While there are several such peripherals commercially available, they are currently limited to only a small number of samples (&lt;= 16), which is insufficient for some studies. To support researchers in constructing custom, larger-scale systems, we present our design for a scalable gas sampling peripheral that can be programmed to autonomously sample up to 56 vessels – the “multiplexer”. While originally designed to be used with a Picarro cavity ring-down spectroscopy system, the multiplexer design and data processing approach implemented can be easily adapted to serve as a gas sampling/delivery platform for a wide variety of instruments including other cavity ring-down systems and infra-red gas analyzers. We demonstrate the basic capabilities of the multiplexer by using it to autonomously sample head-space CO2 from 14 laboratory-incubated soils amended with 13C-enriched pyrogenic organic matter for analysis in a Picarro G2201-i cavity ring-down spectroscopy system. This dataset includes the raw data and log files generated during the demonstration run of the instrument constructed and the data processing script necessary to analyze the data. Raw data includes outputs from a Picarro G2131i cavity ringdown spectrometer and includes all data needed to calculate respiration rates and carbon mineralization using the included processing script.
DOI: 10.17632/vtd45jkx6v.2
title: Mitochondria RNA polymerase runoff RNA gel

description: Original Image of the polyacrylamide gel (left five lanes Figure 2H and right four lanes Figure S4I) shows abortive and runoff RNA products after 15 min of transcription reaction with y-mtRNAP, MTF1 WT or mutants. Lane 2 shows the 2-mer RNA marker from a reaction performed with ATP and GTP spiked with α-32P-GTP. The reactions in the rest of the lanes contained ATP, UTP, GTP, and 3’-dCTP.
DOI: 10.17632/85vd7w525n.1
title: Differences in diffusion weighted imaging and resting-state functional connectivity between two culturally distinct populations of prairie vole

description: We used the highly prosocial prairie vole to test the hypothesis that higher-order brain structure, microarchitecture and functional connectivity, would differ between males from populations with distinctly different levels of prosocial behavior. Specifically, Males from Illinois (IL), who display high levels of prosocial behavior and F1 males from Kansas dams and Illinois males (KI), which display the lowest level of prosocial behavior and higher aggression. Behavioral differences between these males are associated with overexpression estrogen receptor alpha in the medial amygdala (MeA) and bed nucleus of the stria-terminalis (BST) and neuropeptide expression in the paraventricular nucleus (PVN). We compared apparent diffusion coefficient (ADC), fractional anisotropy (FA), and BOLD resting-state functional connectivity (rsFC) between males. The article is published in 'Biological Psychiatry: Cognitive Neuroscience and Neuroimaging' with DOI: /10.1016/j.bpsc.2020.08.014 Fc-Conn Data: The Functional Connectivity data is in "FcConnData.zip" folder. Once unzipped into 'FcConnData' folder it has two subfolders for 'IL' for Males from Illinois and ''KSIL" males from Kansas dams and Illinois males. Inside these folders there are separate folder for each subject (Vole). This subject folder contains the EPI Fc-Conn data in NIFTI (.nii) format along with mask and cropped file. The filenames of these files is self explanatory. The processing steps are explained in detail in article. DTI Data: The DW-3D-EPI images were processed and analyzed using MATLAB (Mathworks, Natick, MA) and MedINRIA (version 1.9.0; http://www-sop.inria.fr/asclepios/software/MedINRIA/) software. This data is in "DTI_data.zip" file. Once unzipped into DTI_data folder, this has two subfolders 'IL' for Males from Illinois and ''KSIL" males from Kansas dams and Illinois males. All DWI raw data was converted from bruker format to img/hdr (Analyze) format via MATLAB and stored in individual folder (#_B900). The reserve folder contains the following computed images: ADC, FA, L1, L2, L3 and RD along with B0 image. Each of the extracted image files contains a ROI .nii file and a result excel sheet.
DOI: 10.17632/y5h8vk3xmw.1
title: Lipidomics dataset of PTEN deletion-induced optic nerve regeneration mouse model

description: Adult PTENloxP/loxP mice subjected to intravitreal injection of adeno-associated viruses expressing Cre (AAV-Cre) as a model of regeneration. At 4-week-old, loxP mice were intravitreally-injected with 2-3 μl of either AAV-Cre(KO) or AAV-PLAP (control), and two weeks later optic nerve crush was performed. At indicated time-points after crush (0 days, 7 days, 14 days), mice were euthanized and optic nerves were immediately dissected out, and then flash frozen on dry ice. The Bligh and Dyer method was used for lipid extraction, followed by mass spectrometry lipid profiling with a Q-Exactive Orbitrap Liquid Chromatography-Mass Spectrometer (LC MS-MS). The raw scans were analyzed with LipidSearch 4.2 and the statistical analysis was conducted through Metaboanalyst 4.0.
DOI: 10.17632/j4ydkpct6b.1
title: Superior hypogastric plexus nerve block in minimally-invasive gynaecology: a double-blind randomised controlled trial

description: Clinical trial to evaluate the efficacy of a superior hypogastric plexus nerve block with 10ml 0.75% ropivacaine in reducing opiate requirements in the first 24 hours after minimally invasive gynaecological surgery. This was a double-blind RCT at a single institution. Primary outcome was the total opiate use in first 24h after surgery (mag of fentanyl). Secondary outcome was patient pain measured on a visual analogue scale (1 to 10) at 1, 2, 6, 12 and 24-hours post-surgery.. Patients were randomised over a 5-month period, March to July 2020. 27 patients were randomised to receive a nerve block and 23 to the control. There were no significant demographic or intraoperative differences between the two groups. Opiate use followed a non-parametric distribution. A 40% median opiate reduction was seen in patients randomised to the nerve block (p=0.02). Pain scores were significantly lower in the nerve-block group compared with no-block group at 1 hour and 12 hours. Mean pain scores were 2.67 vs 4.00 at 1 hour (p=0.035) and 1.07 vs 2.09 (p=0.033) at 12 hours respectively.
DOI: 10.17632/r2jmhj76k3.1
title: Supplemental Table - Dermatologic Authors by h-Index

description: Supplemental Table 1. Top 50 dermatology authors by h-index 1980-2020.
DOI: 10.17632/tr37nngmt5.1
title: Association of the Affordable Care Act’s Medicaid Expansion with the diagnosis and treatment of clinically localized melanoma: A National Cancer Database Study

description: Supplemental figure and tables for manuscript publication to JAAD.
DOI: 10.17632/49h6yct4n3.1
title: Topographic data_eastern LLLF

description: Topographic data of the study site used in the paper about gulang earthquake
DOI: 10.17632/kzntvpzvj6.1
title: Data for: A simplified and open-source approach for multiple-valued water surface measurements in 2D hydrodynamic experiments

description: The present data is related to the next article: Hernández-Fontes, J.V.; Hernández, I.D.; Silva, R.; Mendoza, E.; Esperança, P.T.T. “A simplified and open-source approach for multiple-valued water surface measurements in 2D hydrodynamic experiments”. Journal of the Brazilian Society of Mechanical Sciences and Engineering, (2020). DOI: 10.1007/s40430-020-02702-x Please cite this article when using the data.
DOI: 10.17632/w8g4hx5nmz.3
title: GeoBalance VBA program

description: GeoBalance: an Excel VBA program for mass balance calculation in geosciences (by Li X., Zhang C., Almeev R., Holtz F.)
DOI: 10.17632/jkcjdyv5p7.2
title: International Survey of Climate Activists (2019)

description: Questionnaire and response data from a convenience sample of self-identifying climate activists; n=368 individuals across 66 countries in late 2019.
DOI: 10.17632/hk4vydrg4v.1
title: Dataset on marijuana prices in Mexico

description: This dataset provides a first-hand survey that reports on marijuana prices, its determinants, and marijuana buyers’ characteristics in Mexico.
DOI: 10.17632/z4ktvcwfp6.1
title: COVID19 dataset for training and validation of Bayes network model

description: Symptomatic and asymptomatic samples for training and validating COVID19 prediction model
DOI: 10.17632/bjzfxw4jrf.1
title: Smoking and SARS-CoV-2 impair Dendritic Cells and regulate DC-SIGN expression in Tissues

description: Supplemental tables of the publication "Smoking and SARS-CoV-2 impair Dendritic Cells and regulate DC-SIGN expression in Tissues" Cai et al., 2020. Table S1. Mendelian Randomization inferred causal effect of plasma expression of ACE2, DC-SIGN and L-SIGN on COVID-19 risk and severity in the European population. Table S2. The top 100 CD209 expression associated traits identified by GWAS. Table S3. The top 100 CD209 lung expression associated traits identified by PheWAS. Table S4. Mendelian Randomization inferred causal effect of plasma expression of DC-SIGN on cell count and percentage. Smoking and SARS-CoV-2 impair Dendritic Cells and regulate DC-SIGN expression in Tissues Guoshuai Cai*, Yohan Bossé, Mulong Du, Helmut Albrecht, Fei Qin, Xuanxuan Yu, Xizhi Luo, Michelle Androulakis, Xia Zhu, Jun Zhou, Xiang Cui, Changhua Yi, Chao Cheng, Mitzi Nagarkatti, Prakash Nagarkatti, David Christiani, Michael Whitfield, Christopher Amos, Feifei Xiao* The current spreading novel coronavirus SARS-CoV-2 is highly infectious and pathogenic. In this study, we screened the gene expression of these three receptors (ACE2, DC-SIGN and L-SIGN) and DC status in bulk and single cell transcriptomic datasets of upper airway, lung or blood of smokers, non-smokers and COVID-19 patients. We found smoking increased DC-SIGN gene expression and inhibited DC maturation and its ability of T cell stimulation. In COVID-19, DC-SIGN gene expression was interestingly decreased in lung DCs but increased in blood DCs. Strikingly, DCs shifted from cDCs to pDCs in COVID-19, but the shift was trapped in an immature stage (CD22+ or ANXA1+ DC) with MHCII downregulation in severe cases. This observation indicates that DCs in severe cases may stimulate innate immune responses but fail to specifically recognize SARS-CoV-2. Our study provides insights into smoking effect on COVID-19 risk and the profound modulation of DC function in severe COVID-19.
DOI: 10.17632/2xhsx4xnkg.1
title: Gel_Sirt3

description: Original gels of Western blotting related to manuscript "Sirtuin 3 regulates mitochondrial protein acetylation and metabolism in tubular epithelial cells "
DOI: 10.5281/zenodo.4147097
title: Durada del cicle vegetatiu de la vinya a la D.O. Pla de Bages a llarg del segle XXI als escenaris de canvi climàtic RCP 8.5 i RCP4.5 (format SHP)

description: Arxius del shapefile (format SHP de Esri) amb la distribució espacial del valor mitjà de la durada (dies) del cicle vegetatiu de la vinya a la D.O. Pla de Bages per els escenaris de canvi climàtic RCP 8.5 i RCP4.5 projectat per a les dècades dels anys 2030, 2050, 2070 i 2090 i el període Control (1972-2005). A més, un arxiu Word amb les metadades del shapefile.
DOI: 10.5281/zenodo.4147096
title: Durada del cicle vegetatiu de la vinya a la D.O. Pla de Bages a llarg del segle XXI als escenaris de canvi climàtic RCP 8.5 i RCP4.5 (format SHP)

description: Arxius del shapefile (format SHP de Esri) amb la distribució espacial del valor mitjà de la durada (dies) del cicle vegetatiu de la vinya a la D.O. Pla de Bages per els escenaris de canvi climàtic RCP 8.5 i RCP4.5 projectat per a les dècades dels anys 2030, 2050, 2070 i 2090 i el període Control (1972-2005). A més, un arxiu Word amb les metadades del shapefile.
DOI: 10.25592/uhhfdm.920
title: Golden Sheet (AO 19225) from the Louvre in Paris (3D model)

description: ID: AO 19225<br> Object type: sheet<br> Material: metal (gold)<br> Measurements: ?<br> Provenience: Umma (mod. Tell Jokha?)<br> Period/Date: Early Dynastic IIIb (c. 2500-2340 BCE)<br> Language: Sumerian<br> Genre: royal/monumental (witness)<br> Museum/Collection: Louvre Museum, Paris, France<br> CDLI: P222828 The research for this 3D object was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany´s Excellence Strategy – EXC 2176 ‘Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures’, project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.5281/zenodo.4147157
title: Data de floració de la vinya a la D.O. Pla de Bages a llarg del segle XXI als escenaris de canvi climàtic RCP 8.5 i RCP4.5 (format SHP)

description: Arxius del shapefile (format SHP de Esri) amb la distribució espacial del valor mitjà de la data de floració (dia de l’any) de la vinya a la D.O. Pla de Bages per els escenaris de canvi climàtic RCP 8.5 i RCP4.5 projectat per a les dècades dels anys 2030, 2050, 2070 i 2090 i el període Control (1972-2005). A més, un arxiu Word amb les metadades del shapefile.
DOI: 10.5281/zenodo.4147156
title: Data de floració de la vinya a la D.O. Pla de Bages a llarg del segle XXI als escenaris de canvi climàtic RCP 8.5 i RCP4.5 (format SHP)

description: Arxius del shapefile (format SHP de Esri) amb la distribució espacial del valor mitjà de la data de floració (dia de l’any) de la vinya a la D.O. Pla de Bages per els escenaris de canvi climàtic RCP 8.5 i RCP4.5 projectat per a les dècades dels anys 2030, 2050, 2070 i 2090 i el període Control (1972-2005). A més, un arxiu Word amb les metadades del shapefile.
DOI: 10.5281/zenodo.4153077
title: Data de verema de la vinya a la D.O. Pla de Bages a llarg del segle XXI als escenaris de canvi climàtic RCP 8.5 i RCP4.5 (format SHP)

description: Arxius del shapefile (format SHP de Esri) amb la distribució espacial del valor mitjà de la data de verema (dia de l’any) de la vinya a la D.O. Pla de Bages per els escenaris de canvi climàtic RCP 8.5 i RCP4.5 projectat per a les dècades dels anys 2030, 2050, 2070 i 2090 i el període Control (1972-2005). A més, un arxiu Word amb les metadades del shapefile.
DOI: 10.5281/zenodo.4153076
title: Data de verema de la vinya a la D.O. Pla de Bages a llarg del segle XXI als escenaris de canvi climàtic RCP 8.5 i RCP4.5 (format SHP)

description: Arxius del shapefile (format SHP de Esri) amb la distribució espacial del valor mitjà de la data de verema (dia de l’any) de la vinya a la D.O. Pla de Bages per els escenaris de canvi climàtic RCP 8.5 i RCP4.5 projectat per a les dècades dels anys 2030, 2050, 2070 i 2090 i el període Control (1972-2005). A més, un arxiu Word amb les metadades del shapefile.
DOI: 10.5281/zenodo.4153171
title: Nits tropicals a la fase de maduració de la vinya a la D.O. Pla de Bages a llarg del segle XXI als escenaris de canvi climàtic RCP 8.5 i RCP4.5 (format SHP)

description: Arxius del shapefile (format SHP de Esri) amb la distribució espacial del valor mitjà de la amplitud tèrmica a la fase de maduració de la vinya a la D.O. Pla de Bages per els escenaris de canvi climàtic RCP 8.5 i RCP4.5 projectat per a les dècades dels anys 2030, 2050, 2070 i 2090 i el període Control (1972-2005). A més, un arxiu Word amb les metadades del shapefile.
DOI: 10.5281/zenodo.4153170
title: Nits tropicals a la fase de maduració de la vinya a la D.O. Pla de Bages a llarg del segle XXI als escenaris de canvi climàtic RCP 8.5 i RCP4.5 (format SHP)

description: Arxius del shapefile (format SHP de Esri) amb la distribució espacial del valor mitjà de la amplitud tèrmica a la fase de maduració de la vinya a la D.O. Pla de Bages per els escenaris de canvi climàtic RCP 8.5 i RCP4.5 projectat per a les dècades dels anys 2030, 2050, 2070 i 2090 i el període Control (1972-2005). A més, un arxiu Word amb les metadades del shapefile.
DOI: 10.5281/zenodo.4153200
title: Necessitats hídriques netes de la vinya a la D.O. Pla de Bages a llarg del segle XXI als escenaris de canvi climàtic RCP 8.5 i RCP4.5 (format SHP)

description: Arxius del shapefile (format SHP de Esri) amb la distribució espacial del valor mitjà de les necessitats hídriques netes (NHN) de la vinya a la D.O. Pla de Bages per els escenaris de canvi climàtic RCP 8.5 i RCP4.5 projectat per a les dècades dels anys 2030, 2050, 2070 i 2090 i el període Control (1972-2005). A més, un arxiu Word amb les metadades del shapefile.
DOI: 10.5281/zenodo.4153199
title: Necessitats hídriques netes de la vinya a la D.O. Pla de Bages a llarg del segle XXI als escenaris de canvi climàtic RCP 8.5 i RCP4.5 (format SHP)

description: Arxius del shapefile (format SHP de Esri) amb la distribució espacial del valor mitjà de les necessitats hídriques netes (NHN) de la vinya a la D.O. Pla de Bages per els escenaris de canvi climàtic RCP 8.5 i RCP4.5 projectat per a les dècades dels anys 2030, 2050, 2070 i 2090 i el període Control (1972-2005). A més, un arxiu Word amb les metadades del shapefile.
DOI: 10.5519/qd.hjridm3d
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (191055 records)
DOI: 10.6084/m9.figshare.13168253
title: Reliabilty of body composition techniques.xlsx

description: Raw data set of body composition precision error (n=90, 18-85 years) for same- and between-day reliabilty testing.
DOI: 10.5281/zenodo.4134145
title: Dataset for Recurrent Rossby wave packets modulate the persistence of dry and wet spells across the globe

description: This dataset is used in the following study: "Recurrent Rossby wave packets modulate the persistence of dry and wet spells across the globe." Dataset includes: Dry and wet spells for the Northern and the Southern Hemisphere respectively. The output of the statistical model for each season (MJJASO/NDJFMA) and for each spell type (dry/wet) for both the hemispheres (NH/SH). File naming used belongs to mainly two categories: one for naming spell file, and second for naming the output file from the statistical model. An example from each category is explained below. The rest of the files follow the same naming style. <em>Spell file</em>;<strong> NH_1.0mm_dry_spells_all_months_gap_1_days_no_spell2_check.nc</strong>: Northern Hemisphere 1.0mm threshold dry spell for all months with a gap of 1 day <em>Statisical model output file</em>; <strong>NH_weibull_MJJASO_drythresh_1_min_spell_count_40_time_steps_min_spell_length_5D_1D_N_1980_2016.nc</strong>: Northern Hemisphere Weibull model output for MJJASO using dry threshold of 1.0 mm with a minimum spell count of 40 time-steps and a minimum spell length of 5 days for the period 1980-2016 This dataset alone is sufficient for reproducing the analysis presented in the study. Open source tools like Python, R, etc can be used to read '.nc' file type. Additional code help in the form of Jupyter notebooks reproducing figures made from this dataset can be viewed here on GitHub.