cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/xv3dmd7hnw
title: Financing the Litigation Arms Race, Replication Package

description: This is the replication package for "Financing the Litigation Arms Race" in the Journal of Financial Economics by Samuel Antill and Steven R. Grenadier.

This is a theory paper, so there is no data.

To produce the figures appearing the main article, simply run the file master.m, ensuring the other .m files are in the same folder. This will solve our model and plot equilibrium objects for various parameterizations to produce the figures. 

We ran master.m using Matlab2022b and it produced all figures in approximately 1.5 minutes.

Note, we used the matlab2tikz program to turn matlab figures into .tex files. The files for the matlab2tikz program are included.
DOI: 10.6084/m9.figshare.1559136.v1
title: Cyberactivism: A generational comparison of digital activism

description: This research was for a 2013 quantitative Master's thesis. It looks critically at the way digital natives and digital immigrants interact with technology for activism.
DOI: 10.6084/m9.figshare.7032944.v1
title: Aligned long insertions

description: Aligned long insertions to the hg38 contig using BLAST
DOI: 10.17632/4njhpyrrjj
title: Data for: Design of high resistivity light-rare-earth-based PrFe1.93 magnetostrictive alloys: Si doping and high-pressure annealing

description: XRD+M-H+Electrical resistivity+Magnetostriction
DOI: 10.6084/m9.figshare.10280510.v1
title: Gene database of Staphylococcus aureus NCTC 8325

description: <i>Staphylococcus aureus</i> is a round, Gram-positive bacterium that inhabits the skin and upper respiratory tract of human body. A commensal in most cases, but which can also become an opportunistic pathogen, <i>S. aureus</i> is an important clinical bacterium particularly in cases of strains resistant to methicillin (also known as methicillin resistant <i>Staphylococcus aureus</i>, MRSA). This work sought to provide a gene database of all genes in the sequenced genome of <i>S. aureus</i> NCTC 8325 (Genbank accession number: NCBI Reference Sequence: NC_007795.1). Using an in-house MATLAB algorithm, the Genbank genome file was parsed to reveal gene name, gene function and gene sequence of all genes in the genome of this Gram-positive bacterium. Information obtained should be useful for various microbiology and clinical research applications seeking, for example, to better understand the mechanisms underpinning the virulence of <i>S. aureus</i> under different clinical settings. <br><br>
DOI: 10.6084/m9.figshare.2055702.v1
title: Eruptive, volcano-tectonic and magmatic history of the Stromboli volcano (north-eastern Aeolian archipelago)

description: The full geochemical dataset for Stromboli in csv format.
DOI: 10.6084/m9.figshare.25036142.v1
title: Intergenerational transport of double-stranded RNA in C. elegans can limit heritable epigenetic changes

description: These are the source data for all the figures in the manuscript to be published in eLife (Shugarts et al.).
DOI: 10.17632/cgdww9bvbf
title: Subduction thermal modeling in Makran

description: The data includes the three-dimensional temperature field (degrees Celsius), water content (wt%), dehydration rate (wt%/km), rock phase change distribution, and subduction velocity field (cm/yr) of the subducting plate, as well as the coastline and volcano distribution. The data source method is a three-dimensional finite-difference numerical simulation. The geophysical calculation is ensured after the subduction thermal regime reaches a steady state. The temperature field error range is ±10 degrees Celsius, and the velocity field error range is ±0.1cm/ yr. This data can be further used analyzing the geophysical field of subduction zone.

File naming: the data is stored in text paraview format.
Data reading method: All ASCII code files in the data set can be directly opened with paraview software.
Data list:
1. eq_USGS.vtk (Earthquake Catalog by IRIS, 2000-2010, Trabant et al., 2012) http://ds.iris.edu/ieb/
2. state.vtk (country boudaries, GMT, Wessel and Smith, 1998) 
3. volcano.vtk (global volcanoes at NCEI, Siebert et al., 2010)
4. plate_boundary.vtk (global plate boundaries, Bird, 2003) 
5. box.vtk (model region, this study)
6. slab.vtk (3-D thermal regime, slab water content and slab dehydration, this study)
DOI: 10.17632/m3mkdz37w6
title: Exploring the Gene Expression and Plasma Protein Levels of HSP90, HSP60, and GDNF in Multiple Sclerosis Patients and Healthy Controls

description: Multiple sclerosis (MS) is a chronic neurodegenerative disease characterized by im-mune-mediated inflammation and neurodegeneration in the central nervous system (CNS). In this study, we aimed to investigate the gene expression and plasma protein levels of three neuropro-tective genes—heat shock proteins (HSP90 and HSP60) and glial cell line-derived neurotrophic factor (GDNF)—in MS patients compared to healthy controls. Forty patients with relaps-ing-remitting MS and 40 healthy volunteers participated in this study. Gene expression was measured using reverse transcription quantitative real-time PCR, and protein levels were as-sessed via ELISA. The results showed a significant increase in HSP90 (1.7-fold) and HSP60 (2-fold) gene expression in MS patients compared to controls, along with corresponding increases in protein levels (1.5-fold for both HSP90 and HSP60). In contrast, GDNF gene expression and protein levels were significantly reduced in MS patients, with a 7-fold decrease in gene expression and a 1.6-fold reduction in protein levels. Notably, a non-linear relationship between GDNF gene expression and protein concentration was observed in MS patients, suggesting complex regulato-ry mechanisms influencing GDNF in the disease. The upregulation of HSP90 and HSP60 in MS highlights their roles in immune regulation and stress responses, while the reduction in GDNF indicates impaired neuroprotection. These findings suggest that HSP90, HSP60, and GDNF could serve as biomarkers for disease progression and as potential therapeutic targets in MS, offering promising avenues for future research and treatment development.
DOI: 10.6084/m9.figshare.1591617.v2
title: Sample sheet 2 - dilution series

description: The origin of the samples sequenced in the second run
DOI: 10.6084/m9.figshare.7120769.v1
title: Data.csv

description: Daily Korea Stock Price Index (KOSPI) for January 2000–December 2016. The total number of cases comprises 4,203 trading days. Each sample contains daily price information including the low price, high price, opening price, closing price, and trading volume.
DOI: 10.6084/m9.figshare.22003959.v1
title: RT-PCR-data-10min-afterStress.csv from Effects of different acute stressors on the regulation of appetite genes in the carp (<i>Cyprinus carpio</i> L.) brain

description: csv files containing the raw data calcualated from the PCR data
DOI: 10.6084/m9.figshare.5120665.v1
title: Supplementary Material for: Local Population Structure in Arabian Peninsula Revealed by Y-STR Diversity

description: Genetic studies have been underway on Arabian Peninsula populations because of their pivotal geographic location for population migration and times of occurrence. To assist in better understanding population dynamics in this region, evidence is presented herein on local population structure in the Arabian Peninsula, based on Y-STR characterisation in four Arabian samples and its comparison in a broad geographical scale. Our results demonstrate that geography played an important role in shaping the genetic structure of the region around the Near-East. Populations are grouped regionally but none of these groups is significantly differentiated from others and all groups merge in the Near-East, in keeping with this important migration corridor for the human species. Focusing on the Arabian Peninsula, we show that Dubai and Oman share genetic affinities with other Near-Eastern populations, while Saudi Arabia and Yemen show a relative distinctive isolated background. Those two populations may have been kept relatively separated from migration routes, maybe due to their location in a desert area.
DOI: 10.6084/m9.figshare.24032238.v1
title: Genome of <i>L. chinensis</i>

description: <i>Leymus chinensis</i>, a dominant perennial grass in the Eurasian Steppe, is well known for its remarkable adaptability and forage quality. Hardly any breeding has been done on the grass, limiting its potential in ecological restoration and forage productivity. To enable genetic improvement of the untapped, important species, we obtained a 7.85-Gb high quality genome of <i>L. chinensis </i>with a particularly long contig N50 (318.49 Mb). Its allotetraploid genome is estimated to originate 5.29 million years ago (MYA) from a cross between the Ns-subgenome relating to <i>Psathyrostachys</i>, and the unknown Xm-subgenome. Multiple bursts of transposons during 0.433–1.842 MYA after genome allopolyploidization, which involved predominantly the Tekay and Angela of LTR retrotransposons, contributed to its genome expansion and complexity. With the genome resource available, we successfully developed a genetic transformation system as well as the gene editing pipeline in <i>L. chinensis</i>. We knocked out the monocot-specific miR528 using CRISPR/Cas9, resulting in the improvement of yield-related traits with increases in the tiller number and growth rate. Our research provides valuable genomic resources for Triticeae evolutionary studies and presents a conceptual framework illustrating the utilization of genomic information and genome editing to accelerate the improvement of wild <i>L. chinensis</i>, with features such as polyploidization and self-incompatibility.
DOI: 10.6084/m9.figshare.25231604.v1
title: dataset_Fan et al. GCB 2024

description: Dataset of the article titled "Long-term nitrogen and phosphorus addition have stronger negative effects on microbial residual carbon in subsoils than topsoils in subtropical forests" with information of plant C input (fine root biomass, fine root C, and litter C), microbial community structure, enzyme activity (C/N/P-cycling enzymes), mineral properties, and MRC.
DOI: 10.6084/m9.figshare.3561327.v1
title: Appendix A. More information regarding the application of portfolio theory to river networks, a figure illustrating the vast dendritic network of the Fraser River study system, a figure showing wavelet analyses, and a table that highlights previous research on stability in river processes.

description: More information regarding the application of portfolio theory to river networks, a figure illustrating the vast dendritic network of the Fraser River study system, a figure showing wavelet analyses, and a table that highlights previous research on stability in river processes.
DOI: 10.6084/m9.figshare.14672178.v1
title: scz2021

description: GWAS summary statistics from the Psychiatric Genomics Consortium (PGC)
DOI: 10.6084/m9.figshare.19744798.v1
title: SA3 area 2020-based total population projections

description: This Excel workbook contains projections of population totals of SA3 areas (2016 ASGS) in Australia from 2020 to 2035. The projections are created as the average of four extrapolative models: (i) a constant share of population model in which local area populations are projected as the jump-off year proportion of the national population multiplied by the national projected population; (ii) a linear/exponential model which projects local area population using linear extrapolation if base period growth is positive and exponential extrapolation if it is negative; (iii) a share of growth model in which projected local population growth from the linear/exponential model is adjusted to match projected national population change; and (iv) a modified exponential model in which the exponential model is subject to floor and ceiling limits to avoid excessive growth or decline.
DOI: 10.6084/m9.figshare.20160449.v1
title: PKR_artiodactyla_codon_aln.fas

description: Alignment of PKRs from Artiodactyla (Fig 1 Jacquet et al 2022)
DOI: 10.6084/m9.figshare.28321592.v2
title: Data from: Microbial necromass carbon drives soil organic carbon accumulation during long-term vegetation succession

description: This dataset presents data on plant- and microbial-derived carbon (C) from long-term vegetation succession sequences on the Loess Plateau. It includes three files: “Plant lignin phenols.xlsx”, “Microbial necromass carbon.xlsx”, and “Soil chemical and biological properties.xlsx”. These data were obtained from field surveys and laboratory analyses to assess the contribution of plant- and microbial- derived C to soil organic carbon (SOC) during vegetation succession. The results showed that a unimodal distribution of total lignin phenols along succession, peaking at 100 years. Vegetation succession significantly increased microbial-derived C, including microbial necromass C (MNC) and glomalin-related soil proteins (GRSP). The contribution of MNC to SOC was high and increased significantly with vegetation succession, whereas the proportion of plant-derived C and GRSP in SOC consistently decreased. In addition, the distribution of lignin phenols is determined by the quality and abundance of plant litter input to the soil, and the increase in microbial-derived C is closely associated with microbial metabolism mediated by environmental factors. However, the C turnover pathway from microbial necromass to persistent SOC formation, as inferred from the nonlinear response of the MNC accumulation coefficient, requires 90–100 years to achieve a stable contribution to soil C sequestration. These findings further highlight the critical role of the microbial C pump in SOC formation and accumulation, providing new insights on sustainable soil C sequestration practices during ecological restoration.
DOI: 10.6084/m9.figshare.7907180.v1
title: Charred plant remains 13E0459 Grange Castle

description: Small assemblage of possible early medieval charred plant remains from Grange Castle Business Park, excavated under licence 13E0459. <br>
DOI: 10.17632/f6jrtyfp66
title: Titan Global Map Shapefiles

description: Shapefiles for Titan's main geomorphological units. Global map presented in Lopes et al. (2020)
DOI: 10.6084/m9.figshare.22589032.v1
title: Prediction of depression in 5th graders: text-based study

description: Dataset contains data from 102 Czech pupils (43 boys, 59 girls) of 5th grade aged from 10 to 12 years. Depression was measured using the Children's Depression Inventory (CDI), Q1-Q27 are item answers. Furthermore, the children were assigned to write an informal text, a letter from the holidays, columns from WC (wordcount) to Other P are LIWC items from letter text.
DOI: 10.6084/m9.figshare.23709726.v1
title: spatial imaging data for the 10X visium brain dataset

description: This is the spatial imaging data for the 10X visium brain dataset ( https://figshare.com/articles/dataset/10X_visium_data_for_spatial-informed_cell-cell_communication/23621151), including the spatial locations, scalefactors_json.json and tissue image files.
DOI: 10.17632/hfynpvtrz3
title: Data for: "A Virtual Alternative to Molecular Model Sets: A Beginners' Guide to Constructing and Visualizing Molecules in Open-source Molecular Graphics Software"

description: This is a collection of supplementary contents for the paper, doi: 10.1186/s13104-021-05461-7.

• A step-by-step manual (pdf, docx)
• Student worksheets and associated files (For Students)
• Solution manuals, grading criteria and associated files (For Instructors)
• Demonstration videos, also available at https://www.youtube.com/playlist?list=PLKS8fH7Jh_HOynG2pqli2ZuuQ0GAwrbXk
DOI: 10.17632/w2h773scgv
title: LandUnderPressure

description: LandUnderPressure Project outputs
DOI: 10.6084/m9.figshare.23951592.v2
title: Dataset

description: To develop a prognostic model for neoadjuvant immunochemotherapy efficacy in esophageal squamous cell carcinoma (ESCC) by analyzing the immune microenvironment
DOI: 10.6084/m9.figshare.28828592.v1
title: Sample 3 for study of Western Civilization

description: Sample of 27 European countries with description of their levels of freedom, responsibility, emancipative values, and individualism.
DOI: 10.6084/m9.figshare.4822255.v8
title: Supplemental data for Knight et al. 2019 mBio 10:e00446-19. https://doi.org/10.1128/mBio.00446-19

description: Supplemental data for Knight et al.2019. Evolutionary<br>and genomic insights into<i> Clostridioides difficile</i><br>sequence type 11: a diverse zoonotic and<br>antimicrobial-resistant lineage of global One<br>Health importance. <i>mBio</i> 10:e00446-19<br><br>https://doi.org/10.1128/mBio.00446-19.<br><br>Comprising:Supplementary FiguresSupplementary Tables (including read accessions)<br>Annotated genome assemblies
DOI: 10.17632/4ghbckk9xp
title: List of tables and questionnaires (supplemental material to JAAD research article "Variation in initial biopsy technique for primary melanoma diagnosis: a population-based cohort study in New South Wales, Australia")

description: List of tables and questionnaires (supplemental material to JAAD research article "Variation in initial biopsy technique for primary melanoma diagnosis: a population-based cohort study in New South Wales, Australia")
DOI: 10.17632/8bhjfn4m96
title: The Monte Carlo Event Generator AcerMC version 1.0 with interfaces to PYTHIA 6.2 and HERWIG 6.3

description: Abstract The AcerMC Monte Carlo Event Generator is dedicated for the generation of Standard Model background processes at pp LHC collisions. The program itself provides a library of the massive matrix elements and phase space modules for generation of a set of selected processes: gg, qq̄→tt̄b b̄, qq̄W(→ℓν)b b̄, qq̄W(→ℓν)tt̄, gg, qq̄→Z/γ^* (→ℓℓ)b b̄, gg, qq̄→Z/γ^* (→ℓℓ,νν, b b̄) tt̄ and complete electroweak gg→(Z/W/γ^* →)b b̄tt̄ process. The hard process event, generated with one of these modules, can ... Title of program: AcerMC version 1.0 Catalogue Id: ADQQ_v1_0 Nature of problem Despite a large repertoire of processes implemented for generation in event generators like PYTHIA [1] or HERWIG [2] a number of background processes, crucial for studying expected physics potential of the LHC experiments is missing. For some of these processes the matrix element expressions are rather lengthy and/or to achieve a reasonable generation efficiency it is necessary to tailor the phase-space selection procedure to the dynamics of the process. That is why it is not practical to imagin ... Versions of this program held in the CPC repository in Mendeley Data ADQQ_v1_0; AcerMC version 1.0; 10.1016/S0010-4655(02)00592-1 ADQQ_v2_0; AcerMC version 3.8; 10.1016/j.cpc.2012.10.032 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/zffzsvvpkk
title: Digital Economy Development in a less developed coastal city: a Case study in Shanwei, Guangdong, China

description: The data introducing the overview of the digital sector expansion in Shanwei City in 2022-2024 comes from the Shanwei Daily and the Shanwei Municipal Government Work Report. The data to assess the digital industry maturity originates from the China City Statistical Yearbook. The data used to gauge attention to the digital economy is obtained from the Baidu Search Index. The data assessing the extent of the digital industry innovation and entrepreneurship is sourced from enterprise big data compiled by the Peking University Enterprise Big Data Research Center.
DOI: 10.6084/m9.figshare.19589326.v1
title: Annual dynamic flow dataset of the titanium products in China from 2001 to 2020

description: The database contains annual primary data and secondary data for titanium products in China from 2001 to 2020. The primary data are recorded as operating capacity, annual production, international trade, and internal sales of titanium sponge, titanium ingots, and titanium mills. The secondary data are recorded as the total amount of the low-grade titanium scrap and recycled high-grade titanium swarf, and the ratios of off-grade titanium sponge, low-grade titanium scrap, and recycled high-grade titanium swarf for each titanium product.
DOI: 10.6084/m9.figshare.28911902.v1
title: Supplementary_Data_<b>Computational modelling of toroidal membranes </b><b>at </b><b>division and fission sites</b>

description: Supplementary Data associated with <b>Computational modelling of toroidal membranes </b><b>at </b><b>division and fission sites</b><br><br>The formation of specialised membrane architectures is fundamental to biological processes. Computational modelling of membrane structures offers a means to unravel complex molecular mechanisms that remain inaccessible through <i>in </i><i>vitro</i> or <i>in</i><i> </i><i>vivo </i>approaches. Among these architectures, toroidal membranes, otherwise known as fusion pores or fission pores, occur during the final stages of cell division, exocytosis, endocytosis, and membrane fission; including during the phagocytic-like engulfment of bacterial endospores. Here we have designed ‘MemTorMD’, a computational simulation pipeline based on the TS2CG methodology, to enable coarse-grained modelling of free toroidal membranes with biologically-relevant dimensions. This approach allowed us to determine the lipid properties required for stable toroidal membrane formation, providing a biologically accurate simulation surface. Furthermore, we demonstrate the applicability of this approach to investigate the function of proteins that localise at toroidal membranes, and drive molecular events such as membrane fission by a prokaryotic fission protein. Collectively, our work provides insight into membrane and protein behaviour at toroidal membranes and provides a platform for the development of more complex simulations involving additional molecular components at membrane toroids present in a range of processes across life.
DOI: 10.17632/f59yhhbjwx
title: Nanophotonic resonators in stratified media with the nanobem toolbox

description: nanobem is a recently developed matlab toolbox for the solution of Maxwell's equations using a boundary element method, which is particularly suited for nanophotonic resonators and the computation of resonance modes [Hohenester et al., CPC 276, 108337 (2022)]. In this paper we present an extension that allows simulating nanoparticles situated in stratified media, using the matrix-friendly approach of Chew. Possible simulation setups include nanoparticles on substrates or embedded in layer structures, holes in films, or void structures. We provide a detailed documentation of the various toolbox classes, and present selected showcase results and convergence studies.
DOI: 10.6084/m9.figshare.7761878.v3
title: Figure 3 Minimum Data Set - Orientation Values

description: Title:TWO PHOTON FLUORESCENCE AND SECOND HARMONIC GENERATION <br>CHARACTERIZATION OF EXTRACELLULAR MATRIX REMODELING IN POST-INJURY MURINE TEMPOROMANDIBULAR JOINT OSTEOARTHRITIS<br>Supplemental data for Figure 3<br>Orientation data in radians measured from second harmonic generation microscopy<br>non-surgical control (NSC),4-week (E4), 8-week (E8), 12-week (E12), 16-week (E6), and <br>16-week sham control (S16) <br>
DOI: 10.25405/data.ncl.12472859.v2
title: Machine learning-based detection of FLOSS version release events from Stack Overflow message data

description: Reprodicibility package for "Machine learning-based detection of FLOSS version release events from Stack Overflow message data" paper.
DOI: 10.6084/m9.figshare.19100618.v1
title: Experimental result with unsupervised features

description: This excel file contained experimental results with unsupervised features.
DOI: 10.6084/m9.figshare.22491730.v1
title: Reaction SMILES dataset

description: Reaction SMILES dataset update (now 733K), each line in the file represents a valid reaction SMILES. Source material US patents (2005 - 2016) collection by Daniel Lowe with data enhancement. Source material also includes reaction SMILES drawn from the general literature. Also includes USPTO data from 2022 and 2023. All SMILES are valid by RDKit. Also see https://kmt.vander-lingen.nl