cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8hg2gg6/2
title: Supplemental Spreadsheet

description: Contains all morphological measurements and gross morphological codings for archaeocyaths, lithistid sponges and modern demosponges used in study.
DOI: 10.5061/dryad.8nc8480/2
title: R code for Fires in Protected Areas Reveal Unforeseen Costs of Colombian Peace
DOI: 10.5061/dryad.8s27g9f/1
title: Large Mammal Intensity of Use Data Collected by Camera Trap
DOI: 10.5061/dryad.8s27g9f/2
title: Wolf Group Size Data Collected by Camera Trap
DOI: 10.5061/dryad.bk58sd6/1
title: Data_Capture_Recapture_Survival_Analysis

description: Capture-recapture dataset used for the survival analysis. CR-history contains two digits per year, first digit is only used when individual was ringed as chick. Further details explained in file.
DOI: 10.5061/dryad.fb851dn/1
title: Dataset Dryad

description: The dataset bases on a common garden experiment with 16 Silene latifolia populations (ac, be, ca, ce, cv, es,  gi, hg,  je, lb, ma, mp, mt, ng, nh, nj)  from two different distribution ranges (native [eu] versus invasive [us]). N corresponds to the latitudinal origin of the regarding population. We exposed plants from all populations to a breeding treatment (inbred [i] versus outbred [a]) using five different maternal families (a, b, c, d, e) per population for the experimental crossings. Subsequently inbred and outbred plants were exposed to a herbivory treatment (exclusion [ex] versus inclusion [in]), which was applied on a plot basis (∑ = 16 plots, of which 8 were exclusions [ex] and 8 were inclusions [in]). Individuals within the experiment received consecutive numbers. We determined plant sex (female [f] versus male [m]), assessed plant growth and reproduction related traits (number leaves, aboveground biomass, corolla size, number of flowers and buds, number of fruits), as well as traits related to infestation damage (damaged leaves, flowers, fruits ) and morphological resistance (leaf trichome density).
DOI: 10.5061/dryad.ft4sn88.2/10.2
title: Dryad_Supplementary_File_10_richness_modifier_10nov2016.28nov2016

description: Dryad Supplementary File 10. R script used to modify richness estimates of ant genera.
DOI: 10.5061/dryad.ft4sn88.2/11.2
title: Dryad Supplementary File 11. Higher-level taxonomy of vascular plant genera used in analyses.

description: Dryad Supplementary File 11. Higher-level taxonomy of vascular plant genera used in analyses.
DOI: 10.5061/dryad.ft4sn88.2/12.2
title: Dryad Supplementary File 12. Constraint tree derived from higher-level taxonomy which was used to infer vascular plant phylogeny.

description: Dryad Supplementary File 12. Constraint tree derived from higher-level taxonomy which was used to infer vascular plant phylogeny.
DOI: 10.5061/dryad.ft4sn88.2/13.2
title: Dryad Supplementary File 13. Partition file used to infer vascular plant phylogeny.

description: Dryad Supplementary File 13. Partition file used to infer vascular plant phylogeny.
DOI: 10.5061/dryad.ft4sn88.2/14.2
title: Dryad Supplementary File 14. Constrained ML phylogeny of vascular plants.

description: Dryad Supplementary File 14. Constrained ML phylogeny of vascular plants.
DOI: 10.5061/dryad.ft4sn88.2/7.2
title: Dryad Supplementary File 7. Time-calibrated maximum-likelihood phylogeny of 1731 ant species and associated Aculeata outgroup taxa.

description: Dryad Supplementary File 7. Time-calibrated maximum-likelihood phylogeny of 1731 ant species and associated Aculeata outgroup taxa.
DOI: 10.5061/dryad.ft4sn88.2/8.2
title: Dryad Supplementary File 8. List of valid ant species derived from AntWiki.

description: Dryad Supplementary File 8. List of valid ant species derived from AntWiki.
DOI: 10.5061/dryad.ft4sn88.2/9.2
title: Dryad Supplementary File 9. List of valid ant species assigned to alternate genera.

description: Dryad Supplementary File 9. List of valid ant species assigned to alternate genera.
DOI: 10.5061/dryad.h2372g0/10
title: Figure 2C data

description: Source file for Figure 2 panel C.
DOI: 10.5061/dryad.h2372g0/11
title: Figure 2D data

description: Source file for Figure 2 panel D.
DOI: 10.5061/dryad.h2372g0/12
title: Figure 3 data

description: Source file for Figure 3.
DOI: 10.5061/dryad.h2372g0/9
title: Figure 2B data

description: Source file Figure 2 panel B.
DOI: 10.5061/dryad.h2hd82v/1
title: Routine clinical data uploaded by the tablet during the ALMANACH project

description: This is the raw data transmitted through CommCare to DHIS2 and it represents all the clinical information checked at the moment of the consultation
DOI: 10.5061/dryad.h2hd82v/2
title: Data collected during the survey

description: This excel file resume the paper checklist used to assess the quality of care of the health workers during the consultation. They are aggregated data
DOI: 10.5061/dryad.h3hm84k/1
title: Data from: “Hot deals at sea”: responses of a top predator to human-induced changes in the coastal ecosystem

description: Title. “Hot deals at sea”: responses of a top predator (Bottlenose dolphin, Tursiops truncatus) to human-induced changes in the coastal ecosystem
Author. Díaz López, Bruno
Journal. Behavioural Ecology.
Description: ARCHIVED DATA  - File name

SURVEY EFFORT DATA - Effort.csv

GROUP SIZE AND COMPOSITION - GroupSize.csv

PREDOMINANT BEHAVIOUR - Behaviour.csv

SIGHTINGS PER UNIT OF EFFORT - SPUE.csv

PHOTO-IDENTIFICATION DATA AND ASSOCIATION PATTERNS - SOCPROG.csv

ABUNDANCE ESTIMATION - HISTORIES_Mark.DBF / alternatively SOCPROG.csv

PROPORTION OF MARKED & UNMARKED INDIVIDUALS - MarkedRatio.csv
DOI: 10.5061/dryad.kd3g03r/1
title: SupplementaryMaterial_DataMatrices

description: The file contains list of communities with coordinates, a table of species occurrences, morphometric data, list of species used in phylogenetic analysis, details of molecular analyses, a table of species co-occurrence records, a table of pairwise Euclidean distances and a table of pairwise Patristic distances.
DOI: 10.5061/dryad.mf7qb0c/1
title: CellProfiler pipeline

description: CellProfiler pipeline for counting the number of nuclei in Hoechst stained image (4x image).
DOI: 10.5061/dryad.mf7qb0c/2
title: COMMSBIO-18-0553-SupplementaryData1

description: Activator and suppressor screens in THP-1 macrophages.
DOI: 10.5061/dryad.nt511dp/2
title: Stable isotope raw data

description: This file provides all of the stable isotope raw data used in this article. The README file is including a complete description of datasets.
DOI: 10.5061/dryad.nt511dp/3
title: Genotype-phenotype association by RDA

description: This file provides all the all R codes (scripts) as well as the description of provided raw data to run the genotype-phenotype association analysis realized using a redundancy analysis (RDA) in this article. See the README file for further information.
DOI: 10.5061/dryad.vd6k4b2.1
title: Data from: Genetic dissection of hybrid male sterility across stages of spermatogenesis
DOI: 10.5061/dryad.vd6k4b2.1/1.1
title: Testis histology phenotypes
DOI: 10.5061/dryad.vd6k4b2.1/4.1
title: Read me
DOI: 10.5061/dryad.vd6k4b2.2
title: Data from: Genetic dissection of hybrid male sterility across stages of spermatogenesis
DOI: 10.5061/dryad.vd6k4b2.2/1.2
title: Testis histology phenotypes
DOI: 10.5061/dryad.vd6k4b2.2/2.2
title: F2 genotypes
DOI: 10.5061/dryad.vd6k4b2.2/3.2
title: Genomic positions of SNP markers
DOI: 10.5061/dryad.vd6k4b2.2/4.2
title: Read me
DOI: 10.17632/kx99xc8yc7.1
title: Data for: The Uncertainty of Subjective Thermal Comfort Measurement

description: This dataset provides three thermal comfort chamber test, which has been utilized in the paper attached to quantify the uncertainty of subjective thermal comfort measurement.
DOI: 10.5061/dryad.0gn43fr/1
title: Fieldwork

description: Data collected during the fieldwork period at eight agricultural grasslands in SW-Friesland, The Netherlands.
DOI: 10.5061/dryad.16dp926/1
title: Vector transmission from DSF grapevines data set

description: Data from vector transmission experiment for Xylella fastidiosa from DSF transgenic grapevines. File is an .rds file for loading directly into R. The file is a list of length 2. The first item in the list is metadata describing each variable of the data set, including total sample size. The second item is the data set itself.
DOI: 10.5061/dryad.1kr7759/1
title: CommunityMatrix_Observer1

description: Raw count matrix of PCT image processing. Each row represents one image, the first and second column are PCT and camera number, the thirds represents the unique image ID. The remaining columns are the species counts with the headings corresponding to the SpeciesID_List file. Oberserver 1 is L. Widmer
DOI: 10.5061/dryad.1kr7759/2
title: CommunityMatrix_Observer2

description: Raw count matrix of PCT image processing. Each row represents one image, the first and second column are PCT and camera number, the thirds represents the unique image ID. The remaining columns are the species counts with the headings corresponding to the SpeciesID_List file. Oberserver 2 is E. Heule
DOI: 10.5061/dryad.1kr7759/3
title: SpeciesID_List

description: List of species observed in the study. The ID column represents the 6 letter code used in the community matrices. The last column indicates the position of the species in the water column, 1 referring to a purely benthic and 4 to a pelagic habitat.
DOI: 10.5061/dryad.1kr7759/4
title: CommunityMatrix_3507

description: Raw count matrix of 1 of 2 cameras used for examining community disturbance through SCUBA divers (S5)
DOI: 10.5061/dryad.1kr7759/5
title: CommunityMatrix_4028

description: Raw count matrix of 2 of 2 cameras used for examining community disturbance through SCUBA divers (S5)
DOI: 10.5061/dryad.1kr7759/6
title: SpeciesLength_List

description: Specimens used for size comparison from the cichlid collection at University Basel. ID corresponds with SpeciesID_List, SL (Standard Length), TL (Total Length), W (Weight)
DOI: 10.5061/dryad.224rg77/1
title: Global warming impact (GWI) of anual and perennial bioenergy crops

description: The data are collected from field experiments at the W.K. Kellogg Biological Station (KBS) Long-Term Ecological Research (LTER) site of the Michigan State University from 2009 through 2016. The file contains annual CO2-equivalent balances of net ecosystem C exchange (measured using eddy covariance), N2O and CH4 fluxes (measured using chamber methodology), grain yield and/or biomass weighed from entire field and CO2-equivalent emissions due to farming operations and agronomic inputs. These data were used to compute fossil fuel offset credit, global warming impact (GWI) and emission reduction relative to lifecycle greenhouse gas emissions of gasoline (fossil fuel) for each bioenergy system.
DOI: 10.5061/dryad.30h50r7/1
title: Fine root decomposition rates
DOI: 10.5061/dryad.3sk8ht4/1
title: BotterilJamesetal_Oecologia_DRYAD_Data

description: All morphological, growth and survival data used to generate the results reported in this paper
DOI: 10.5061/dryad.4j867pv/1
title: range shifting modelling data

description: Mean distance moved and standard deviation from theoretical modelling of range shifting when traits are interacting with developmental life history
DOI: 10.5061/dryad.5jh21k3/1
title: Statham_Giant_kangaroo_rat_submission_Dryad

description: Sequence and genotype data for giant kangaroo rats (Dipodomys ingens). The file has three tabs, the first of which is named 'read me' and describes the contents of the other tabs.
DOI: 10.5061/dryad.5p7647r/1
title: Antibiotic trial development data for Aedes aegypti

description: Count data from Aedes aegypti antibiotic trial - cumulative pupae counts, number of emerged adults from each treatment.
DOI: 10.5061/dryad.5p7647r/2
title: Antibiotic trial fitness data for Aedes aegypti

description: Egg counts and percentage hatch from antibiotic trial on Aedes aegypti.
DOI: 10.5061/dryad.63p479j/13
title: LaJoyaOnlyGenePop

description: GenePop file for lice north of the San Acacia constriction
DOI: 10.5061/dryad.63p479j/14
title: 34 louse infrapopulationsGenePop

description: Louse GenePop file for 34 2016-infrapopulations of lice from south of San Acacia constriction
DOI: 10.5061/dryad.63p479j/15
title: 64 louse infrapopulations GenePop.gen

description: GenePop file for all lice included in study
DOI: 10.5061/dryad.63p479j/16
title: diveRsity output_Allelic Richness_HO_HE_for_64_infrapopulations

description: diveRsity output file for all lice included in study.  AR, Ho, He are given.
DOI: 10.5061/dryad.63p479j/17
title: PopGenReport for all 2016 lice

description: PopGenReport for all 2016 lice
DOI: 10.5061/dryad.63p479j/18
title: PopGenReport for 2016 lice south of San Acacia

description: PopGenReport for 2016 lice south of San Acacia
DOI: 10.5061/dryad.63p479j/19
title: PopGenReport for 2016 LaJoya lice only

description: PopGenReport for 2016 LaJoya lice only
DOI: 10.5061/dryad.6tm7272/1
title: Prepared for the future - Raw measurement data

description: File containing the raw, untransformed measurements of 26 morphological variable. all linear measurements (length, width, depth) are in mm. All "surface" traits refer to projected areas and are in mm2 (mm squared). The assignments to ecotypes is detailed in the supplementary methods (Table S3)
DOI: 10.5061/dryad.7kc589v/1
title: Figure 3

description: Nematodes were reared on E. coli OP50 until L4/young adult stage (at about three days old), then subsequently transferred to the indicated bacterium. They were heat shocked at 34˚C three days later. After three and six hours, replicate plates were removed from the heat and scored for survival
DOI: 10.5061/dryad.7kc589v/2
title: Figure 4

description: Nematodes were reared on the indicated bacterium until three days old, then were either left at standard conditions or heat shocked. To quantify offspring, we washed worms off plates with M9 into 1.5ml tubes ("total volume" indicates volume of liquid in the tube). Then we aliquoted 10ul from each tube three times onto glass wells, took the mean of the three aliquots, then multiple by the total volume of each tube, to estimate the number of offspring in each tube.
DOI: 10.5061/dryad.7kc589v/3
title: Figure 5

description: Nematodes were reared on the first bacterium indicated before being transferred to the bacterium they were heat shocked on when they reached adulthood
DOI: 10.5061/dryad.894jc22/1
title: Baer_&_Maron_JEcol_Data_&_Code

description: Data and R Code associated with Baer & Maron, "Declining demographic performance and dispersal limitation influence the geographic distribution of the perennial forb, Astragalus utahensis (Fabaceae)" (Journal of Ecology)
DOI: 10.5061/dryad.8nc8480/10
title: MODIS Active Fire Detections for January and February 2017

description: MODIS Collection 6 NRT Hotspot / Active Fire Detections MCD14DL for January and February 2017 for Colombia with information on the distance to the nearest protected area and location within FARC 2013 territory for each detected hotspot
DOI: 10.5061/dryad.8nc8480/11
title: MODIS Active Fire Detections for January and February 2018

description: MODIS Collection 6 NRT Hotspot / Active Fire Detections MCD14DL for January and February 2018 for Colombia with information on the distance to the nearest protected area and location within FARC 2013 territory for each detected hotspot
DOI: 10.5061/dryad.8nc8480/3
title: R script to compare models to forest loss
DOI: 10.5061/dryad.8nc8480/4
title: R code for Fires in Protected Areas Reveal Unforeseen Costs of Colombian Peace
DOI: 10.5061/dryad.8nc8480/5
title: R Code to plot Figure in Fires in Protected Areas Reveal Unforeseen Costs of Colombian Peace
DOI: 10.5061/dryad.8nc8480/6
title: Data set

description: Fire densities per year inside, within 5-km buffer zone from the protected area limit and outside
DOI: 10.5061/dryad.9021d2v/1
title: Data files for 'Morphological and digestive adjustments buffer performance: how staging shorebirds cope with severe food declines'

description: Data file include 5 files: 1) break force & prey quality; 2) Food availability & food composition & diet selection; 3) function response; 4) gizzard; 5) The weight proportion (%) of columella
DOI: 10.5061/dryad.99fq552/1
title: Suppl Table 1

description: Summary of histopathologic findings for each animal.
DOI: 10.5061/dryad.99fq552/2
title: Supplemental Figure 1

description: Supplemental Figure 1:  Spleen and submandibular lymph node pathology.  Splenic (left panel) and lymph node (right panel) sections considered to have normal parenchymal architecture from a saline control BLT-NOG mouse are shown in A and B respectively.  In BLT-NOG (C) and BLT-NOG-EXL (E) nivolumab treated mice, multifocal, pale, expansile nodules composed mainly of histiocytes (insets) were observed.  Similarly, lymph nodes in the BLT-NOG (D) and BLT-NOG-EXL (E) treated groups exhibited histiocytic nodular infiltrates (high magnification insets) that were slightly more eosinophilic. Hematoxylin and eosin.
DOI: 10.5061/dryad.99fq552/3
title: Supplemental Figure 2

description: Supplemental Figure 2:  Pathology of less common histological findings in BLT-NOG and BLT-NOG-EXL nivolumab treated mice.  Lesions observed in both BLT-NOG and BLT-NOG-EXL treated mice included submucosal lymphohistiocytic infiltrates in the stomach (A), often at the region of the limiting ridge, and; regionally extensive, mural to transmural lymphohistiocytic and neutrophilic infiltrates in the cecum (B). Lesions limited to BLT-NOG-EXL nivolumab treated mice included multifocal lymphocytic (and fewer histiocytic) infiltrates in the urinary bladder submucosa (C); mild, regionally extensive lymphocytic meningitis at the level of the diencephalon (D), and; multifocal lymphohistiocytic and occasionally neutrophilic infiltrates extending into the trigeminal nerve and ganglia (E), and the pituitary gland (F). Hematoxylin and eosin.
DOI: 10.5061/dryad.99fq552/4
title: Supplemental Figure 3

description: Supplemental Figure 3:  Representative histological figures from a mouse with graft versus host disease. GvHD inflammatory lesions in skin (A), lung (B), liver (C), kidney (D), pancreas (E), and sternum (F) are considered less severe, segmental to multifocal rather than more diffuse, and consist of more lymphocytes than histiocytes (insets) with fewer instances of granulomas compared to nivolumab treated BLT-NOG and BLT-NOG-EXL mice. Hematoxylin and eosin.
DOI: 10.5061/dryad.b1g138g/1
title: PRISMA flow diagram
DOI: 10.5061/dryad.b1k015f/1
title: MagnevilleRatzRichardsonSmiseth

description: This file consists of a spreadsheet, which provides data for the effects of larval density at dispersal, initial larval density, initial number of larvae in the brood, carcass size and shared environmental conditions on mean larval mass and larval survival.
DOI: 10.5061/dryad.bk58sd6/2
title: Data_Hatching_Sex_Ratio

description: Dataset containing all chicks from complete nests and used to calculate sex ratio at hatch. All details are explained in file.
DOI: 10.5061/dryad.d5b598n/1
title: mortality depending on temperature in common garden experiment

description: Mortality data (in percentage) measured on two replicates (A and B) of C. riparius population in between 2 different generation (3 and 5) at different development time (after 48h of experiment and at adult stage) during a common garden experiment with transplantation involving temperature. The mortality is reported depending on raising temperature, treatment temperature, temperature variation populations were subjected to (raising temperature - treatment temperature) and the egg clutch individuals came from.
DOI: 10.5061/dryad.f448b91/1
title: ColiasMuseumData

description: Specimen Data in csv format
DOI: 10.5061/dryad.f448b91/2
title: spatial_functions

description: R code for spatial analysis functions. See https://github.com/lbuckley/MuseumTraits for full code.
DOI: 10.5061/dryad.fs8sb1g/1
title: Cyclic uniaxial compression, 29 particles, run 1

description: Positions and weighted adjacency matrices for 29 particles under cyclic compression. See readme for details.
DOI: 10.5061/dryad.fs8sb1g/2
title: Cyclic uniaxial compression, 29 particles, run 2

description: Positions and weighted adjacency matrices for 29 particles under cyclic compression. See readme for details.
DOI: 10.5061/dryad.fs8sb1g/3
title: Cyclic uniaxial compression, 824 particles, run 1

description: Positions and weighted adjacency matrices for 824 particles under cyclic compression. See readme for details.
DOI: 10.5061/dryad.fs8sb1g/4
title: Cyclic uniaxial compression, 824 particles, run 2

description: Positions and weighted adjacency matrices for 824 particles under cyclic compression. See readme for details.
DOI: 10.5061/dryad.ft4sn88.2/15.2
title: Dryad Supplementary File 15. Genera dropped from the vascular plant ML phylogeny.

description: Dryad Supplementary File 15. Genera dropped from the vascular plant ML phylogeny.
DOI: 10.5061/dryad.ft4sn88.2/16.2
title: Dryad Supplementary File 16. Constrained ML phylogeny of vascular plants after genera in file genera removed.

description: Dryad Supplementary File 16. Constrained ML phylogeny of vascular plants after genera in file genera removed.
DOI: 10.5061/dryad.ft4sn88.2/17.2
title: Dryad Supplementary File 17. Time-scaled phylogeny of plant genera based on age estimates in Magallón et al. (2013).

description: Dryad Supplementary File 17. Time-scaled phylogeny of plant genera based on age estimates in Magallón et al. (2013).
DOI: 10.5061/dryad.ft4sn88.2/18.2
title: Dryad Supplementary File 18. treePL file used to time-scale vascular plant phylogeny.

description: Dryad Supplementary File 18. treePL file used to time-scale vascular plant phylogeny.
DOI: 10.5061/dryad.ft4sn88.2/19.2
title: Dryad Supplementary File 19. Time-calibrated maximum-likelihood phylogeny of 10785 vascular plant genera.

description: Dryad Supplementary File 19. Time-calibrated maximum-likelihood phylogeny of 10785 vascular plant genera.
DOI: 10.5061/dryad.ft4sn88.2/20.2
title: Dryad Supplementary File 20. Time-calibrated maximum-likelihood phylogeny of 1731 ant species. Outgroup taxa removed and tree ladderized

description: Dryad Supplementary File 20. Time-calibrated maximum-likelihood phylogeny of 1731 ant species. Outgroup taxa removed and tree ladderized
DOI: 10.5061/dryad.ft4sn88.2/21.2
title: Dryad_Supplementary_File_21_BAMM_controlfile

description: Dryad_Supplementary_File_21_bamm_controlfile
DOI: 10.5061/dryad.k718h66/1
title: datapacket

description: The data packet is a gzip archive containing three data files (metadata.csv, 25snp_reference.gen, and 25snpNEW.gen) and one text file (datapacket.txt) describing contents of datafiles.
DOI: 10.5061/dryad.kf2553j/1
title: Site Climate Variables

description: Location and climatic variables of each study site. Temperature and precipitation variables were estimated for 2009-2015 using the PRISM Climate Group Model, and day of year of first snowmelt was estimated using a regional regression (Petry et al. 2016).
DOI: 10.5061/dryad.mf7qb0c/3
title: COMMSBIO-18-0553-SupplementaryData2

description: Activator and suppressor screens in LPS-primed bone marrow derived macrophages (BMDMs).
DOI: 10.5061/dryad.mf7qb0c/4
title: Description of data

description: Description of data contained within the Excel sheets (Supplementary Data 1 and Supplementary Data 2).
DOI: 10.5061/dryad.n8g55b6/1
title: SOCPROGinput

description: Input file for software SOCPROG to conduct association analyses. See 'README' text file for more detail.
DOI: 10.5061/dryad.n8g55b6/2
title: SOCPROG_SuppMaterial

description: Supplementary Material file for import into SOCPROG software for association analyses. See 'README' text file for more detail.
DOI: 10.5061/dryad.n8g55b6/3
title: GAI_Home_range_overlap_Adehabitat_input

description: This is the input file for the ‘AdehabitatHR’ package (Calenge 2006) in R v 3.3.1 (R Core Team 2015) to look at individual home range overlap in the study area for use in Generalised Affiliation Indices (GAI) analyses. See 'README' text file for more detail.