cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21430/m35fh8nsod
title: Evaluation of SARS-CoV-2-Specific T-Cell Activation with a Rapid On-Chip IGRA

description: To evaluate SARS-CoV-2-Specific T-Cell Activation using a newly developed microfluidic ELISpot IGRA test
DOI: 10.21430/m3rb8pc5nw
title: Loss of Pfizer (BNT162b2) Vaccine-Induced Antibody Responses against the SARS-CoV-2 Omicron Variant in Adolescents and Adults

description: To better understand the vaccine-induced immunity in children we compared the magnitude and breadth of humoral immune responses in adolescents and adults.
DOI: 10.21430/m35kfibvlj
title: Substantial Neutralization Escape by SARS-CoV-2 Omicron Variants BQ.1.1 and XBB.1

description: To study the neutralization escape of SARS-CoV-2 Omicron Variants BQ.1.1 and XBB.1 and the effectiveness of mRNA mono and bi-valent boosters.
DOI: 10.21430/m3xm1vowho
title: SARS-CoV-2 Nucleocapsid Plasma Antigen for Diagnosis and Monitoring of COVID-19

description: To determine the frequency, duration, and concentration of nucleocapsid antigen in plasma and its association with coronavirus disease 2019 (COVID-19) severity.
DOI: 10.21430/m3z904nddc
title: Selective functional antibody transfer into the breastmilk after SARS-CoV-2 infection

description: To characterize SARS-CoV-2-specific antibodies in maternal serum and breastmilk to compare the functional characteristics of antibodies in these fluids.
DOI: 10.21430/m3wgkbaenu
title: Immune responses and therapeutic challenges in paediatric patients with new‐onset acute myeloid leukaemia and concomitant COVID‐19

description: To study the serological responses to COVID-19 infection in paediatric patients with Acute myeloid leukemia (AML) and the impact of chemotherapy on this response.
DOI: 10.21430/m3stsp1yg8
title: SARS-CoV-2 seroprevalence rates of children seeking medical care in Louisiana during the state stay at home order

description: To define SARS-CoV-2 seroprevalence in children seeking medical care during the first Stay at Home Order in New Orleans, Louisiana, from March through May 2020.
DOI: 10.21430/m31w1utgah
title: Sensitive tracking of circulating viral RNA through all stages of SARS-CoV-2 infection

description: To improve diagnostic sensitivity detection of SARS-CoV-2 RNA in blood by a CRISPR-augmented RT-PCR assay.
DOI: 10.15468/dl.hqvt5m
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Canada",
 "Country is Canada"
 ]
 },
 "TaxonKey is one of (Lactuca canadensis L.)"
 ]
}

 The dataset includes 631 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020601-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21430/m3vfsw4zdv
title: ACE2-IgG1 fusions with improved in vitro and in vivo activity against SARS-CoV-2

description: To create and test ACE2-IgG1 fusion proteins for bioavailability and neutralizing activity against SARS-CoV-2.
DOI: 10.21430/m376j9d2nt
title: SARS-CoV-2 antigen exposure history shapes phenotypes and specificity of memory CD8+ T cells

description: Although mRNA vaccine efficacy against severe coronavirus disease 2019 remains high, variant emergence has prompted booster immunizations. However, the effects of repeated exposures to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) antigens on memory T cells are poorly understood. Here, we utilize major histocompatibility complex multimers with single-cell RNA sequencing to profile SARS-CoV-2-responsive T cells ex vivo from humans with one, two or three antigen exposures, including vaccination, primary infection and breakthrough infection. Exposure order determined the distribution between spike-specific and non-spike-specific responses, with vaccination after infection leading to expansion of spike-specific T cells and differentiation to CCR7 CD45RA+effectors. In contrast, individuals after breakthrough infection mount vigorous non-spike-specific responses. Analysis of over 4,000 epitope-specific T cell antigen receptor (TCR) sequences demonstrates that all exposures elicit diverse repertoires characterized by shared TCR motifs, confirmed by monoclonal TCR characterization, with no evidence for repertoire narrowing from repeated exposure. Our findings suggest that breakthrough infections diversify the T cell memory repertoire and current vaccination protocols continue to expand and differentiate spike-specific memory.
DOI: 10.21430/m3d15gqkge
title: Relationship between hemagglutinin stability and influenza virus persistence after exposure to low pH or supraphysiological heating

description: In this work, we developed a high-throughput assay to measure the HA stability of surveillance isolates by monitoring the pH at which these viruses become inactivated. For four A/TN/09 (H1N1) HA mutants and 73 IAVs of varying subtype, virion inactivation pH was compared to HA activation pH and the rate of inactivation during 55 degree Celsius heating.
DOI: 10.21430/m3hy5ygxt6
title: Association of Frailty, Age, and Biological Sex With Severe Acute Respiratory Syndrome Coronavirus 2 Messenger RNA Vaccine-Induced Immunity in Older Adults

description: To characterize the intersection of sex and aging on antibody responses to SARS-CoV-2 vaccines.
DOI: 10.21430/m32jmcqp66
title: Immunogenicity testing of a recombinant N1 vaccine candidate in vivo

description: Female 6-8 week old BALB/c mice were vaccinated in a prime/boost regimen with 3ug of recombinant N1-MPP protein. The protein was administered intramuscularly either alone or in combination with different adjuvants to enhance the immune response. Furthermore, N1-MPP was used to supplement different seasonal available QIVs and was then either administered in a mixture containing both N1 and QIV or administered in different legs, QIV in the left leg and N1 at the same time in the right leg. Afterward, the mice were challenged with 25x LD50 of A/Singapore/GP1908/2015 (H1N1) virus, and weight loss and survival were monitored over 2 weeks. Afterward, serological analysis of the serum obtained after 1st and 2nd vaccination was conducted.
DOI: 10.21430/m3jq2eu16s
title: SARS-CoV-2 seroprevalence and risk factors among meat packing, produce processing, and farm workers

description: To evaluate the occupational risk factors of SARS-CoV-2 infection and rate of seropositivity among food processing workers from the Latinx communities in the United States.
DOI: 10.21430/m36cgg8mu7
title: Prevalent, protective, and convergent IgG recognition of SARS-CoV-2 non-RBD spike epitopes

description: To evaluate the molecular composition and binding epitopes of the immunoglobulin G (IgG) antibodies that circulate in blood plasma after SARS-CoV-2 infection.
DOI: 10.21430/m3ki3kv40a
title: UV 222 disinfection of SARS-CoV-2 in solution

description: To quantitate UV222 disinfection kinetics of SARS‑CoV‑2 in solution
DOI: 10.5281/zenodo.11204046
title: Whitney et al. 2017-2018 homegarden agrobiodiversity data

description: Data used in part for the publications 



Whitney, Cory, Joseph Bahati, and J. Gebauer. “Ethnobotany and Agrobiodiversity; Valuation of Plants in the Homegardens of Southwestern Uganda.” Ethnobiology Letters 9, no. 2 (2018): 90–100. https://doi.org/10.14237/ebl.9.2.2018.503.

 

Whitney, Cory, Eike Luedeling, Oilver Hensel, John R. S. Tabuti, Michael Krawinkel, Jens Gebauer, and Katja Kehlenbeck. “The Role of Homegardens for Food and Nutrition Security in Uganda.” Human Ecology 46, no. 4 (2018): 497–514. https://doi.org/10.1007/s10745-018-0008-9.

 

Whitney, Cory, Eike Luedeling, John R. S. Tabuti, Antonia Nyamukuru, Oliver Hensel, Jens Gebauer, and Katja Kehlenbeck. “Crop Diversity in Homegardens of Southwest Uganda and Its Importance for Rural Livelihoods.” Agriculture and Human Values 35, no. 2 (2018): 399–424. https://doi.org/10.1007/s10460-017-9835-3.

 

Whitney, Cory, John R.S. Tabuti, Oliver Hensel, Ching-hua Yeh, Jens Gebauer, and Eike Luedeling. “Homegardens and the Future of Food and Nutrition Security in Southwest Uganda.” Agricultural Systems 154 (2017): 133–44. https://doi.org/10.1016/j.agsy.2017.03.009.
DOI: 10.5281/zenodo.11204047
title: Whitney et al. 2017-2018 homegarden agrobiodiversity data

description: Data used in part for the publications 



Whitney, Cory, Joseph Bahati, and J. Gebauer. “Ethnobotany and Agrobiodiversity; Valuation of Plants in the Homegardens of Southwestern Uganda.” Ethnobiology Letters 9, no. 2 (2018): 90–100. https://doi.org/10.14237/ebl.9.2.2018.503.

 

Whitney, Cory, Eike Luedeling, Oilver Hensel, John R. S. Tabuti, Michael Krawinkel, Jens Gebauer, and Katja Kehlenbeck. “The Role of Homegardens for Food and Nutrition Security in Uganda.” Human Ecology 46, no. 4 (2018): 497–514. https://doi.org/10.1007/s10745-018-0008-9.

 

Whitney, Cory, Eike Luedeling, John R. S. Tabuti, Antonia Nyamukuru, Oliver Hensel, Jens Gebauer, and Katja Kehlenbeck. “Crop Diversity in Homegardens of Southwest Uganda and Its Importance for Rural Livelihoods.” Agriculture and Human Values 35, no. 2 (2018): 399–424. https://doi.org/10.1007/s10460-017-9835-3.

 

Whitney, Cory, John R.S. Tabuti, Oliver Hensel, Ching-hua Yeh, Jens Gebauer, and Eike Luedeling. “Homegardens and the Future of Food and Nutrition Security in Southwest Uganda.” Agricultural Systems 154 (2017): 133–44. https://doi.org/10.1016/j.agsy.2017.03.009.
DOI: 10.21430/m3x4dfj39h
title: Study of efficacy and longevity of immune response to third and fourth doses of COVID-19 vaccines in patients with cancer: A single arm clinical trial

description: To study the efficacy of additional vaccine doses against SARS-CoV-2 and variants of concern in patients with immune suppression caused by cancer or cancer therapies.
DOI: 10.21430/m37n1w8uxx
title: Intravenous BCG vaccination reduces SARS-CoV-2 severity and promotes extensive reprogramming of lung immune cells

description: To test intravenous BCG vaccination against COVID-19 using the golden Syrian hamster model.
DOI: 10.21430/m3qg1jqwi5
title: Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease

description: To isolate a large panel of Pan-betacoronavirus broadly neutralizing Antibodies and to understand the molecular basis for their broad protection.
DOI: 10.21430/m3autzyp4q
title: SeroNet Reference Study

description: SeroNet objectives are to study the immune response to COVID-19, and to develop, validate, improve, and implement serological testing and associated technologies
DOI: 10.21430/m3x3peyokr
title: Seroepidemiology and risk factors for SARS-CoV-2 infection among household members of food processing and farm workers in North Carolina

description: To measure the seroprevalence of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) and to assess the risk factors for seropositivity among food processing and farm workers, and members of their households, in North Carolina, USA.
DOI: 10.21430/m3bg5xdb1n
title: Dysregulated naive B cells and de novo autoreactivity in severe COVID-19

description: To study the origins, breadth and resolution of autoreactivity in severe COVID-19, with implications for early intervention and the treatment of patients with post-COVID sequelae'
DOI: 10.21430/m3quaiwu0u
title: Pre-existing humoral immunity to human common cold coronaviruses negatively impacts the protective SARS-CoV-2 antibody response

description: SARS-CoV-2 infection causes diverse outcomes ranging from asymptomatic infection to respiratory distress and death. A major unresolved question is whether prior immunity to endemic, human common cold coronaviruses (hCCCoVs) impacts susceptibility to SARS-CoV-2 infection or immunity following infection and vaccination. Therefore, we analyzed samples from the same individuals before and after SARS-CoV-2 infection or vaccination. We found hCCCoV antibody levels increase after SARS-CoV-2 exposure, demonstrating cross-reactivity. However, a case-control study indicates that baseline hCCCoV antibody levels are not associated with protection against SARS-CoV-2 infection. Rather, higher magnitudes of pre-existing betacoronavirus antibodies correlate with more SARS-CoV-2 antibodies following infection, an indicator of greater disease severity. Additionally, immunization with hCCCoV spike proteins before SARS-CoV-2 immunization impedes the generation of SARS-CoV-2-neutralizing antibodies in mice. Together, these data suggest that pre-existing hCCCoV antibodies hinder SARS-CoV-2 antibody-based immunity following infection and provide insight on how pre-existing coronavirus immunity impacts SARS-CoV-2 infection, which is critical considering emerging variants.
DOI: 10.21430/m3tfvc6naq
title: NK T cells SARS-CoV-2

description: NK and T cells perturbations in pregnancy
DOI: 10.21430/m3cwe7d59l
title: Broadly Reactive H2 Hemagglutinin Vaccines Elicit Cross-Reactive Antibodies in Ferrets Preimmune to Seasonal Influenza A Viruses

description: In this study, preimmune ferrets were vaccinated with wild-type (WT) and COBRA H2 recombinant HA proteins in order to examine the effects that preexisting immunity to seasonal human influenza viruses have on the elicitation of broadly cross-reactive antibodies from heterologous vaccination.
DOI: 10.21430/m3qvefrg2s
title: Broadly protective bispecific antibodies that simultaneously target influenza hemagglutinin and neuraminidase

description: Here, the investigators engineered bispecific antibodies (bsAbs) combining the variable domains of CR9114 and 1G01, and evaluated their properties in vitro and in vivo.
DOI: 10.15468/dl.r7pm63
title: Occurrence Download

description: A dataset containing 29123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is Rudbeckia hirta L."
 ]
}

 The dataset includes 29123 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020602-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnpykk
title: Occurrence Download

description: A dataset containing 332050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scolopax rusticola Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 332050 records from 926 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020597-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djhh9z
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solenopsis invicta",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2014",
 "Month is greater than or equal to January",
 "Month is less than or equal to December"
 ]
}

 The dataset includes 44 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026595-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6c69z4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sheathospora",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026596-251120083545085/datasets/export for details.
DOI: 10.5281/zenodo.17808513
title: Cognitive and Psychological Factors as Predictors of Shoulder Functionality: A Cross-Sectional Multiple Regression Analysis
DOI: 10.5281/zenodo.17808514
title: Cognitive and Psychological Factors as Predictors of Shoulder Functionality: A Cross-Sectional Multiple Regression Analysis
DOI: 10.5281/zenodo.17593213
title: The Data for 'Non-thermal Ionization of Kilonova Ejecta: Observable Impacts'

description: Produced synthetic kilonova spectra for 'Non-thermal Ionization of Kilonova Ejecta: Observable Impacts' using the Sedona radiative transfer code. Each model is an h5 file with the following groups:



Lnu - Array of length # of timesteps by # of frequency bins that contains the spectral sequence of each kilonova model in cgs units (erg/s/Hz)

click - Array of length # of timesteps by # of frequency bins for the number of Monte Carlo particles that make up Lnu

mu - Center of polar angular bins (not useful since simulations are 1D)

mu_edges - Edges of polar angular bins (not useful since simulations are 1D)

nu - Array of length # of frequency bins that are the central frequencies of a bin (Hz)

nu_edges - Array of length # of frequency bins +1 that are the edges of each frequency bin (Hz)

phi - Center of azimuthal angular bins (not useful since simulations are 1D)

phi_edges - Edges of azimuthal angular bins (not useful since simulations are 1D)

time - Times at which each spectrum was generated (seconds)

time_edges - Edges of time bins (seconds)


Each kilonova spectra file is named according to QNLTE_n<#>_toy_KN_<lanthanide fraction>X_lan_<characteristic velocity>v_<mass>M_1D_spec_final.h5 where:



# represents the index of the outer power law of the density profile (the inner index is always 1)

lanthanide fraction is the fraction of lanthanides in the ejecta by mass

characteristic velocity is the kinetic velocity of the ejecta in units of the speed of light

mass is the mass of the ejecta in units of solar masses
DOI: 10.5281/zenodo.17593212
title: The Data for 'Non-thermal Ionization of Kilonova Ejecta: Observable Impacts'

description: Produced synthetic kilonova spectra for 'Non-thermal Ionization of Kilonova Ejecta: Observable Impacts' using the Sedona radiative transfer code. Each model is an h5 file with the following groups:



Lnu - Array of length # of timesteps by # of frequency bins that contains the spectral sequence of each kilonova model in cgs units (erg/s/Hz)

click - Array of length # of timesteps by # of frequency bins for the number of Monte Carlo particles that make up Lnu

mu - Center of polar angular bins (not useful since simulations are 1D)

mu_edges - Edges of polar angular bins (not useful since simulations are 1D)

nu - Array of length # of frequency bins that are the central frequencies of a bin (Hz)

nu_edges - Array of length # of frequency bins +1 that are the edges of each frequency bin (Hz)

phi - Center of azimuthal angular bins (not useful since simulations are 1D)

phi_edges - Edges of azimuthal angular bins (not useful since simulations are 1D)

time - Times at which each spectrum was generated (seconds)

time_edges - Edges of time bins (seconds)


Each kilonova spectra file is named according to QNLTE_n<#>_toy_KN_<lanthanide fraction>X_lan_<characteristic velocity>v_<mass>M_1D_spec_final.h5 where:



# represents the index of the outer power law of the density profile (the inner index is always 1)

lanthanide fraction is the fraction of lanthanides in the ejecta by mass

characteristic velocity is the kinetic velocity of the ejecta in units of the speed of light

mass is the mass of the ejecta in units of solar masses
DOI: 10.15468/dl.9ar9z2
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solidago",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2014",
 "Month is greater than or equal to January",
 "Month is less than or equal to December"
 ]
}

 The dataset includes 58 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026597-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxfuuf
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pestalosphaeria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026598-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17807990
title: Relatório Técnico - Diagnóstico Socioambiental da Fronteira da Paz: Rivera (UY) e Sant'Ana do Livramento (BR)
DOI: 10.15468/dl.kcmcp9
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorghum bicolor",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2014",
 "Month is greater than or equal to January",
 "Month is less than or equal to December"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026599-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybnrvt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diaporthostoma",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026600-251120083545085/datasets/export for details.
DOI: 10.17632/559mchb37p
title: Tertiary lymphoid structures at varied stages exhibit distinct anti-tumorigenic immunity

description: We built a high-resolution single-cell transcriptomic atlas by sequencing cells derived from four different tissue sources, including surgically resected tumour (denoted as T), histologically normal adjacent tissue (N), lymphoid node (L), and peripheral blood (P), from a cohort of 27 treatment-naive donors with GC, covering two clinical phenotypes — subtype (diffuse, indeterminate, and intestinal) and stage (I, II, and III). Nineteen tumour samples were assayed by 33 ST sections, covering three categories of sampling locations in the tumour (core, in-between, and edge). In addition, we assayed 39 replicates from the main study cohort using ST.
DOI: 10.17632/559mchb37p.1
title: Tertiary lymphoid structures at varied stages exhibit distinct anti-tumorigenic immunity

description: We built a high-resolution single-cell transcriptomic atlas by sequencing cells derived from four different tissue sources, including surgically resected tumour (denoted as T), histologically normal adjacent tissue (N), lymphoid node (L), and peripheral blood (P), from a cohort of 27 treatment-naive donors with GC, covering two clinical phenotypes — subtype (diffuse, indeterminate, and intestinal) and stage (I, II, and III). Nineteen tumour samples were assayed by 33 ST sections, covering three categories of sampling locations in the tumour (core, in-between, and edge). In addition, we assayed 39 replicates from the main study cohort using ST.