DOI: 10.5281/zenodo.5639794
title: Nomer Corpus of Taxonomic Resources hash://sha256/bb6dac6461b66212c5b1826447d7765529ff5cbadeac1915f7c3be9748eda991

description: This publication contains a Preston archive of resources used by Nomer, a biodiversity name and term translator. This archive contains specific (repackaged) versions of: NCBI Taxonomy [1,2], ITIS Taxonomy [3], GBIF Backbone Taxonomy [4,5], Index Fungorum [6], and the Plazi Treatment Bank [7]. Please follow academic citation guidelines when using this corpus. To clone this archive: $ preston clone https://zenodo.org/record/5639794/files/ After cloning this archive, you should be able to reproduce results below without the --remote https://zenodo.org... part. This publication has history: $ preston history --remote https://zenodo.org/record/5639794/files/<br> &lt;urn:uuid:0659a54f-b713-4f86-a917-5be166a14110&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/bb6dac6461b66212c5b1826447d7765529ff5cbadeac1915f7c3be9748eda991&gt; . This publication contains versions for the following internet content aliases (aka URLs): $ preston alias -l tsv --remote https://zenodo.org/record/5639794/files/ | cut -f1 https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz<br> https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt<br> https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv<br> https://github.com/plazi/treatments-rdf/archive/master.zip<br> https://uofi.box.com/shared/static/54l3b7h4q4pwqq4fgqvx42h3d328fl1c.csv<br> https://www.nodc.noaa.gov/cgi-bin/OAS/prd/download/50418.1.1.tar.gz<br> https://zenodo.org/record/3833105/files/synonym_links.gz<br> https://zenodo.org/record/3833105/files/taxonomic_units.gz<br> https://zenodo.org/record/3833105/files/taxon_unit_types.gz<br> https://zenodo.org/record/3834881/files/taxon.tab.gz<br> https://zenodo.org/record/5222044/files/gbif-backbone-by-id.tsv.gz<br> https://zenodo.org/record/5222044/files/gbif-backbone-by-name.tsv.gz<br> https://zenodo.org/record/5526782/files/taxonCache.tsv.gz<br> https://zenodo.org/record/5526782/files/taxonMap.tsv.gz For specific versions of content associated with the aliases: $ preston alias --remote https://zenodo.org/record/5639794/files/<br> &lt;https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/30519c7daaf94dd0b5492718fc6a850bbef77bcbe9d715dec4482f4a710eb25e&gt; &lt;urn:uuid:618b9b48-cecc-497d-853f-1a0ffc679d2f&gt; .<br> &lt;https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/6ededfa4a2498dbbb00df1055bb4220f7da52442710f36cd455eed80bce7fcb4&gt; &lt;urn:uuid:6498435a-98cb-4e8d-8db9-5dd5d85e6c3f&gt; .<br> &lt;https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/312126dc5860ce405badaf78854540b13e43ee0c70239606708e84aeaa55e25c&gt; &lt;urn:uuid:1f871044-2937-406d-9099-1cdb9631dc02&gt; .<br> &lt;https://github.com/plazi/treatments-rdf/archive/master.zip&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/da69931816b4639907b4aeb9b7799d9851a768fdfb4d53aa7ff37d3eedf2ae18&gt; &lt;urn:uuid:be8dc0e2-780b-4818-851b-0f0a1c68d3bd&gt; .<br> &lt;https://uofi.box.com/shared/static/54l3b7h4q4pwqq4fgqvx42h3d328fl1c.csv&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/7c130289b2132b922760c1b7b5c4067e800bdfcc8b0d01cbb76034d40b9ad12f&gt; &lt;urn:uuid:45c10af2-023c-4aab-9210-8fdd62261e8a&gt; .<br> &lt;https://www.nodc.noaa.gov/cgi-bin/OAS/prd/download/50418.1.1.tar.gz&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/6b44f811d89a828bc1dc6938c4ba6d181b7abdd4d8750be39b3cd6b096cdc849&gt; &lt;urn:uuid:e4519373-1363-4903-ac63-0d3a51ebc7c9&gt; .<br> &lt;https://zenodo.org/record/3833105/files/synonym_links.gz&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/430e530a3bed7fb2b55e051e2f32c6a6bf667ab50b34d97d81c7dd46ff36b034&gt; &lt;urn:uuid:d3edc302-8531-46d6-98ac-852c5edc4c79&gt; .<br> &lt;https://zenodo.org/record/3833105/files/taxonomic_units.gz&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/93be309767d800ef1234724e1c846ef94718fe57027b88f4acf26d271bb44337&gt; &lt;urn:uuid:37657f43-d0bc-4f5a-b669-20b2e402e517&gt; .<br> &lt;https://zenodo.org/record/3833105/files/taxon_unit_types.gz&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/2c610601728671ae753e25205e485aa24595ee50a6ce108d6363e6f26e923f8f&gt; &lt;urn:uuid:31df2acd-ba7f-45b5-9d52-59b42d340136&gt; .<br> &lt;https://zenodo.org/record/3834881/files/taxon.tab.gz&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/174611f436bf7de37bbfdb79af6420f186c2916cd927c72e68e1e8429be88c81&gt; &lt;urn:uuid:4302b4d3-81d0-430d-80b4-f22a53087b66&gt; .<br> &lt;https://zenodo.org/record/5222044/files/gbif-backbone-by-id.tsv.gz&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/c434c7d3622421b17dadcd119391b32a66edee59f484d4cab924d92fd17713e2&gt; &lt;urn:uuid:82a50989-0bbb-41f2-904e-428a0a23122b&gt; .<br> &lt;https://zenodo.org/record/5222044/files/gbif-backbone-by-name.tsv.gz&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/6e11ae9961a9498b60d4bdeb489d6c1f5da9c2732310edaecdc79bd287b79ef4&gt; &lt;urn:uuid:a0bdf9bc-ed81-4cf7-9cad-110434e3d07c&gt; .<br> &lt;https://zenodo.org/record/5526782/files/taxonCache.tsv.gz&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/1e2b2a3f82e03a598be7abe3f65839a4c5fd7ce3ac607820b0c32faafc2dddd4&gt; &lt;urn:uuid:1ba5bc7d-d33c-44fa-a279-30fd81eaf776&gt; .<br> &lt;https://zenodo.org/record/5526782/files/taxonMap.tsv.gz&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/a33a1f22f8334745d5fb174d368afc15c2b844b0b9ab2208df058efdb5cbe2b7&gt; &lt;urn:uuid:1b604c93-5838-42d9-b33a-5531438c529a&gt; . where the left side is the alias (or URL) and the right side contains the content id (or sha256 hash) of the associated content. <strong>References</strong> [1] Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. doi: 10.1093/database/baaa062 [2] Sayers EW, et al. GenBank. Nucleic Acids Res. 2019. 47(D1):D94-D99. doi: 10.1093/nar/gky989. [3] Integrated Taxonomic Information System (ITIS), www.itis.gov, doi: 10.5066/F7KH0KBK [4] Simplified GBIF Backbone Taxonomy. Accessed at https://hosted-datasets.gbif.org/datasets/backbone/ on 2021-08-18. [5] GBIF Secretariat (2021). GBIF Backbone Taxonomy. Checklist dataset https://doi.org/10.15468/39omei accessed via GBIF.org on 2021-08-18. [6] Index Fungorum: Species Fungorum (2021). http://www.speciesfungorum.org [7] Plazi Treatment Bank (2021). https://github.com/plazi/treatments-rdf/ http://plazi.org/ .