cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27288624.v1
title: <b>DLEU2 facilitates bladder cancer progression through </b><b>miR-103a-2-5p/SOS1</b><b> axis</b>

description: <b>Background:</b> Bladder cancer (BC) is a life-threatening malignancy of the urinary system. Dysregulation of lncRNA acts vital role in various progression of BC. However, the function with potential regulation mechanism of lncRNA DLEU2 in BC cells remains no clue.<b>Methods:</b> The expression profiles of lncRNAs, miRNAs, along with mRNA in normal bladder tissues or BC tissues were analyzed by utilizing raw data obtained from NCBI GEO database. The lncRNAs, miRNAs, along with mRNA expression in BC cells were evaluated through application of RT-qPCR. CCK-8 along with Edu assay, Transwell along with scratch assay were assessed BC cells proliferation, migration, respectively. Luciferase experiment was exerted to inspect the interaction between DLEU2 with miRNAs (including miR-103a-2-5p), miR-103a-2-5p with SOS1. The SOS1 protein expression in BC cells was evaluated using western blot.<b>Results: </b>DLEU2 was the most differentially high expressed in BC. Functionally, DLEU2 overexpression could facilitate BC cells proliferation with migration, while DLEU2 knockdown had opposite effects. DLEU2 sponged miR-103a-2-5p. miR-103a-2-5p knockdown could facilitate BC cells proliferation with migration, while miR-103a-2-5p knockdown + DLEU2 knockdown had opposite effects. SOS1 was a target of miR-103a-2-5p. SOS1 overexpression could facilitate BC cells proliferation with migration, while SOS1 overexpression + miR-103a-2-5p overexpression had the opposite effects; SOS1 knockdown could block BC cells proliferation with migration, while SOS1 knockdown + miR-103a-2-5p knockdown had opposite effects.<b>Conclusions:</b> Our findings verified that DLEU2 facilitates BC progression through miR-103a-2-5p/SOS1 axis.
DOI: 10.6084/m9.figshare.27288624.v2
title: <b>DLEU2 facilitates bladder cancer progression through </b><b>miR-103a-2-5p/SOS1</b><b> axis</b>

description: <b>Background:</b> Bladder cancer (BC) is a life-threatening malignancy of the urinary system. Dysregulation of lncRNA acts vital role in various progression of BC. However, the function with potential regulation mechanism of lncRNA DLEU2 in BC cells remains no clue.<b>Methods:</b> The expression profiles of lncRNAs, miRNAs, along with mRNA in normal bladder tissues or BC tissues were analyzed by utilizing raw data obtained from NCBI GEO database. The lncRNAs, miRNAs, along with mRNA expression in BC cells were evaluated through application of RT-qPCR. CCK-8 along with Edu assay, Transwell along with scratch assay were assessed BC cells proliferation, migration, respectively. Luciferase experiment was exerted to inspect the interaction between DLEU2 with miRNAs (including miR-103a-2-5p), miR-103a-2-5p with SOS1. The SOS1 protein expression in BC cells was evaluated using western blot.<b>Results: </b>DLEU2 was the most differentially high expressed in BC. Functionally, DLEU2 overexpression could facilitate BC cells proliferation with migration, while DLEU2 knockdown had opposite effects. DLEU2 sponged miR-103a-2-5p. miR-103a-2-5p knockdown could facilitate BC cells proliferation with migration, while miR-103a-2-5p knockdown + DLEU2 knockdown had opposite effects. SOS1 was a target of miR-103a-2-5p. SOS1 overexpression could facilitate BC cells proliferation with migration, while SOS1 overexpression + miR-103a-2-5p overexpression had the opposite effects; SOS1 knockdown could block BC cells proliferation with migration, while SOS1 knockdown + miR-103a-2-5p knockdown had opposite effects.<b>Conclusions:</b> Our findings verified that DLEU2 facilitates BC progression through miR-103a-2-5p/SOS1 axis.
DOI: 10.6084/m9.figshare.27366354
title: <b>GAS6/AXL signaling pathway contributes to PLA2R overexpression in membranous nephropathy</b>

description: Phospholipase A2 receptor, PLA2R, is the most frequently targeted auto-antigen in membranous nephropathy(MN).However, the precise mechanisms PLA2R plays in the development and progression of the disease remain to be elucidated. From the microarray data ofthe NEPTUNE study, we found that AXL, a tyrosine protein kinase receptor,was expressed and elevatedin podocytesin patients with MN . We used in situ hybridization,immunofluorescence and immunogold analysesand provided direct evidences that AXL was localized in podocytes and elevated in renal biopsies from patients wtih MN. Furthermore, the ELISA and immunohistochemical analysesrevealed that the expression level of AXL was enhanced and correlated with poor renal outcomes in patients with MN. Notably, upon the stimulation with GAS6, the ligand of AXL, the level of PLA2R was upregulated in cultured human podocytesin vitrodue to delayed degradation while the knockout of AXL reversed the effect. Last, co-immunoprecipitationand Bio-Layer Interferometry analysesdemonstrated that AXL interacted directly withPLA2R. In conclusion, the present study shows that AXLis localized in podocytes and the increase in membranous nephropathy is correlated with the level of PLA2R. AXL could be used as a biomarker in the pathogenesis of membranous nephropathy.
DOI: 10.6084/m9.figshare.27366354.v1
title: <b>GAS6/AXL signaling pathway contributes to PLA2R overexpression in membranous nephropathy</b>

description: Phospholipase A2 receptor, PLA2R, is the most frequently targeted auto-antigen in membranous nephropathy(MN).However, the precise mechanisms PLA2R plays in the development and progression of the disease remain to be elucidated. From the microarray data ofthe NEPTUNE study, we found that AXL, a tyrosine protein kinase receptor,was expressed and elevatedin podocytesin patients with MN . We used in situ hybridization,immunofluorescence and immunogold analysesand provided direct evidences that AXL was localized in podocytes and elevated in renal biopsies from patients wtih MN. Furthermore, the ELISA and immunohistochemical analysesrevealed that the expression level of AXL was enhanced and correlated with poor renal outcomes in patients with MN. Notably, upon the stimulation with GAS6, the ligand of AXL, the level of PLA2R was upregulated in cultured human podocytesin vitrodue to delayed degradation while the knockout of AXL reversed the effect. Last, co-immunoprecipitationand Bio-Layer Interferometry analysesdemonstrated that AXL interacted directly withPLA2R. In conclusion, the present study shows that AXLis localized in podocytes and the increase in membranous nephropathy is correlated with the level of PLA2R. AXL could be used as a biomarker in the pathogenesis of membranous nephropathy.
DOI: 10.15468/dl.qgznm5
title: Occurrence Download

description: A dataset containing 480 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euwallacea fornicatus Wood & Bright, 1992"
 ]
}

 The dataset includes 480 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013107-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqk3sg
title: Occurrence Download

description: A dataset containing 330 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gastrochilus calceolaris (Buch.-Ham. ex Sm.) D.Don"
 ]
}

 The dataset includes 330 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013109-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2ap3f
title: Occurrence Download

description: A dataset containing 4795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Geometry POLYGON((-127.24096 27.57868,-62.67287 27.57868,-62.67287 53.19679,-127.24096 53.19679,-127.24096 27.57868))",
 "TaxonKey is Bromus tectorum L."
 ]
}

 The dataset includes 4795 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013110-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qafy2f
title: Occurrence Download

description: A dataset containing 618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Geometry POLYGON((-119.75594 35.56847,-108.2568 35.56847,-108.2568 42.62589,-119.75594 42.62589,-119.75594 35.56847))",
 "TaxonKey is Bromus tectorum L."
 ]
}

 The dataset includes 618 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013111-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udetwu
title: Occurrence Download

description: A dataset containing 8877 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Chlorocebus pygerythrus (F.Cuvier, 1821)"
 ]
}

 The dataset includes 8877 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013112-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9az9x
title: Occurrence Download

description: A dataset containing 4196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Geometry POLYGON((-124.79061 29.09644,-70.34824 29.09644,-70.34824 47.92871,-124.79061 47.92871,-124.79061 29.09644))",
 "TaxonKey is Bromus tectorum L."
 ]
}

 The dataset includes 4196 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013113-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27329787
title: Data for study on perception and adoption of AI in learning

description: This folder contains:Data set (the excel version has a description of variables in tab 2. The .csv version is the one recommended for the analyses)Data set (survey from experts to validate items)<br>
DOI: 10.6084/m9.figshare.27367179
title: Effects of Feed Enriched with Freshwater Fish Oil on the Nutritional Profile and Growth Performance of Asian Redtail Catfish (Hemibagrus nemurus) Fry

description: This study was conducted to determine the effect of feed enriched with freshwater fish oil (FFO) on the composition of fatty acids, amino acids, growth performance, survival, and seed yield of Asian red-tailed catfish (Hemibagrus nemurus). A total of 1,125 seeds (1.5 mg, 5 mm long) were divided into five groups, each with three replications. Maintenance was carried out in 15 aquariums (15 L of water, 75 seeds per tank) for 40 days. The feed was enriched with 0%, 8%, 10%, 12%, 14% FFO, and the seeds were fed as much as they could. The results showed that feed enrichment with FFO significantly affected the composition of fatty acids, amino acids, growth performance, and survival (p&lt;0.05). Proximate analysis showed differences in crude protein and fat in feed, with total n-3 content increasing from 0.42% to 0.72%, and n-9 increasing from 21.96% to 27.3%. Meanwhile, n-6 decreased from 8.73% to 5.17%, and unsaturated fatty acids increased from 52.88% to 64.14%. The EPA content increased from 1.33% to 1.67% in the 14% FFO diet. The total amino acid content increased from 43.69% to 61.67%, with methionine, tyrosine, and leucine as the most abundant essential amino acids. The final body weight and survival rate of fry fed with 10% FFO were 875.27 mg and 82.22%, respectively. In conclusion, among the treatments involving feed enrichment with FFO, the feed enriched with 10% FFO resulted in the highest growth and survival rates of Hemibagrus nemurus fry.
DOI: 10.6084/m9.figshare.27367179.v1
title: Effects of Feed Enriched with Freshwater Fish Oil on the Nutritional Profile and Growth Performance of Asian Redtail Catfish (Hemibagrus nemurus) Fry

description: This study was conducted to determine the effect of feed enriched with freshwater fish oil (FFO) on the composition of fatty acids, amino acids, growth performance, survival, and seed yield of Asian red-tailed catfish (Hemibagrus nemurus). A total of 1,125 seeds (1.5 mg, 5 mm long) were divided into five groups, each with three replications. Maintenance was carried out in 15 aquariums (15 L of water, 75 seeds per tank) for 40 days. The feed was enriched with 0%, 8%, 10%, 12%, 14% FFO, and the seeds were fed as much as they could. The results showed that feed enrichment with FFO significantly affected the composition of fatty acids, amino acids, growth performance, and survival (p&lt;0.05). Proximate analysis showed differences in crude protein and fat in feed, with total n-3 content increasing from 0.42% to 0.72%, and n-9 increasing from 21.96% to 27.3%. Meanwhile, n-6 decreased from 8.73% to 5.17%, and unsaturated fatty acids increased from 52.88% to 64.14%. The EPA content increased from 1.33% to 1.67% in the 14% FFO diet. The total amino acid content increased from 43.69% to 61.67%, with methionine, tyrosine, and leucine as the most abundant essential amino acids. The final body weight and survival rate of fry fed with 10% FFO were 875.27 mg and 82.22%, respectively. In conclusion, among the treatments involving feed enrichment with FFO, the feed enriched with 10% FFO resulted in the highest growth and survival rates of Hemibagrus nemurus fry.
DOI: 10.25916/sut.27328356.v1
title: Benchmark Dataset for Tape Fibre Layups

description: This dataset contains surface scans of fibre tape layups for benchmarking evaluation algorithms and training Machine Learning algorithms that detect defects in these scans. It consists of a set of 1200 real scans, collected using a laser line triangulation sensor, and 1200 artificial images that aim to mimic the real scans. All images have pixel-accurate annotations.<br><br>For both subsets, a split into training data (990 images) and test data (210 images) has been predefined. For benchmarking purposes, it is recommended only to use the test data split of the real scans. All data points can be used for training and evaluating machine learning algorithms.
DOI: 10.25916/sut.27328356
title: Benchmark Dataset for Tape Fibre Layups

description: This dataset contains surface scans of fibre tape layups for benchmarking evaluation algorithms and training Machine Learning algorithms that detect defects in these scans. It consists of a set of 1200 real scans, collected using a laser line triangulation sensor, and 1200 artificial images that aim to mimic the real scans. All images have pixel-accurate annotations.<br><br>For both subsets, a split into training data (990 images) and test data (210 images) has been predefined. For benchmarking purposes, it is recommended only to use the test data split of the real scans. All data points can be used for training and evaluating machine learning algorithms.
DOI: 10.57967/hf/3393
title: VLM4Bio
DOI: 10.15468/dl.w3vawh
title: Occurrence Download

description: A dataset containing 1467 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pithecia Desmarest, 1804"
 ]
}

 The dataset includes 1467 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013117-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7rnmp
title: Occurrence Download

description: A dataset containing 330 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gastrochilus calceolaris (Buch.-Ham. ex Sm.) D.Don"
 ]
}

 The dataset includes 330 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013118-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybx9wg
title: Occurrence Download

description: A dataset containing 67972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Aves",
 "Year 1995-2005"
 ]
}

 The dataset includes 67972 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013116-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zc447n
title: Occurrence Download

description: A dataset containing 375 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((106.08214 3.84216,125.12562 3.84216,125.12562 27.94407,106.08214 27.94407,106.08214 3.84216))",
 "TaxonKey is Pocillopora Lamarck, 1816"
 ]
}

 The dataset includes 375 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013119-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfmvay
title: Occurrence Download

description: A dataset containing 5603 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "TaxonKey is Notechis scutatus (Peters, 1861)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5603 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017220-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4p7ggy
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Sweden",
 "Country is Finland",
 "Country is Norway"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vulpes lagopus (Linnaeus, 1758)"
 ]
}

 The dataset includes 69 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230440-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6rtm9
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtochilum annulare (Rchb.f.) Kraenzl."
 ]
}

 The dataset includes 64 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154605-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eg05p4
title: Occurrence Download

description: A dataset containing 262 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euwallacea validus (Eichhoff, 1875) Eichhoff, 1875"
 ]
}

 The dataset includes 262 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017221-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k28832
title: Occurrence Download

description: A dataset containing 714 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Balaenoptera musculus brevicauda Ichihara, 1966"
 ]
}

 The dataset includes 714 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079202-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sr369j
title: Occurrence Download

description: A dataset containing 3568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Ophrys apifera Huds."
 ]
}

 The dataset includes 3568 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239667-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a6akqg
title: Occurrence Download

description: A dataset containing 7016 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Torilis leptophylla (L.) Rchb.fil.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7016 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079200-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wkt9kl
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muntiacus muntjak muntjak"
 ]
}

 The dataset includes 72 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017224-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5d9edr
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Thecadactylus rapicauda (Houttuyn, 1782)"
 ]
}

 The dataset's 3 records were derived from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245767-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.14586003
title: JCST_Replication

description: Please cite this dataset as:Huang ZJ, Shao ZQ, Fan GS et al. Community smell occurrence prediction on multi-granularity by developer-oriented features and process metrics. JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY 37(1): 1–25 Jan. 2022. DOI 10.1007/s11390-021-1596-11. data.csv contains features and prediction classes applied to train our machine learners. Each row represents features of one developer.2. The .conf files are configurations to perform Codeface4Smells detections. The manual and source code of the tool is available in: https://github.com/maelstromdat/CodeFace4Smells3. The sentiment dataset is available in: http://ansymore.uantwerpen.be/system/files/uploads/artefacts/alessandro/MSR16/archive3.zip
DOI: 10.6084/m9.figshare.14586003.v5
title: JCST_Replication

description: Please cite this dataset as:Huang ZJ, Shao ZQ, Fan GS et al. Community smell occurrence prediction on multi-granularity by developer-oriented features and process metrics. JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY 37(1): 1–25 Jan. 2022. DOI 10.1007/s11390-021-1596-11. data.csv contains features and prediction classes applied to train our machine learners. Each row represents features of one developer.2. The .conf files are configurations to perform Codeface4Smells detections. The manual and source code of the tool is available in: https://github.com/maelstromdat/CodeFace4Smells3. The sentiment dataset is available in: http://ansymore.uantwerpen.be/system/files/uploads/artefacts/alessandro/MSR16/archive3.zip