cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/e29fb49e3023aa8fa8228c0fcd977fc1
title: Landscape Corridors Promote Long Distance Seed Dispersal by Birds During Winter but Not During Summer at an Experimentally Fragmented Restoration Site

description: In fragmented landscapes, plant population persistence and community
  diversity can hinge upon plants dispersing seeds long distances
  between isolated patches of habitat. Landscape corridors, which
  connect otherwise isolated patches, have been shown to increase seed
  dispersal by birds moving between patch fragments. However, because
  bird behaviors change seasonally, the strength of this "corridor
  effect" may also change. We assessed the utility of corridors for
  promoting seed dispersal by birds during both summer and winter in a
  well-replicated corridor experiment conducted in early successional
  longleaf pine (Pinus palustris) savannah habitat at the Savannah River
  Site in South Carolina, USA. We used a single species of
  bird-dispersed fruiting plant, American black nightshade (Solanum
  americanum), and controlled the timing and number of fruits available
  to birds during summer and winter. Corridors increased long-distance
  seed dispersal during winter but not during summer, indicating that
  the effectiveness of corridors for promoting long-distance seed
  dispersal can depend upon plant reproductive timing and seasonal
  differences in bird movement. A better understanding of the
  seasonality of plant-animal interactions will permit better
  predictions about whether and how corridors provide connectivity for
  plants.
DOI: 10.5281/zenodo.1410575
title: Reformatted Data Analyzed In Alamil Et Al. (2018)

description: Reformatted data analyzed in Alamil et al. (2018; Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases). Three datasets are provided concerning swine influenza virus (reformatted from Murcia et al., 2012), Ebola (reformatted from Gire et al., 2014) and wild salsify potyvirus. Two rds files are provided for swine influenza, the first one for the naive chain, the second one for the vaccinated chain. Ebola rds files are compessed into the archive obolaRDS.zip. rds files can be loaded in the R statistical software with the command "readRDS(filename)", which returns a list. The list contains a "readme" item describing the contents of the list.

Murcia PR, Hughes J, Battista P, Lloyd L, Baillie GJ, Ramirez-Gonzalez RH, et al. Evolution of an Eurasian avian-like influenza virus in naive and vaccinated pigs. PLoS Pathogens. 2012;8(5):e1002730.

Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science. 2014;345:1369–1372
description: {"references": ["Alamil M, Hughes J., Berthier K, Desbiez C, Th\u00e9baud G Soubeyrand S (2018) Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases. Technical Report, BioSP, INRA, Avignon.", "Murcia PR, Hughes J, Battista P, Lloyd L, Baillie GJ, Ramirez-Gonzalez RH, et al. Evolution of an Eurasian avian-like influenza virus in naive and vaccinated pigs. PLoS Pathogens. 2012;8(5):e1002730.", "Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science. 2014;345:1369\u20131372"]}
DOI: 10.5281/zenodo.1410610
title: Reformatted Data Analyzed In Alamil Et Al. (2018)

description: Reformatted data analyzed in Alamil et al. (2018; Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases). The datasets that are provided concern swine influenza virus (reformatted from Murcia et al., 2012), Ebola virus (reformatted from Gire et al., 2014) and wild salsify potyvirus. Two rds files are provided for swine influenza, the first one for the naive chain, the second one for the vaccinated chain. Ebola rds files are compressed into the archive ebolaRDS.zip. rds files can be loaded in the R statistical software with the command "readRDS(filename)", which returns a list. The list contains a "readme" item describing the contents of the list, as well as a "host.table" item providing metadata about host units and a "set.of.sequences" item providing sequencing data formatted in numeric matrices.

Murcia PR, Hughes J, Battista P, Lloyd L, Baillie GJ, Ramirez-Gonzalez RH, et al. Evolution of an Eurasian avian-like influenza virus in naive and vaccinated pigs. PLoS Pathogens. 2012;8(5):e1002730.

Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science. 2014;345:1369–1372
description: {"references": ["Alamil M, Hughes J., Berthier K, Desbiez C, Th\u00e9baud G Soubeyrand S (2018) Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases. Technical Report, BioSP, INRA, Avignon.", "Murcia PR, Hughes J, Battista P, Lloyd L, Baillie GJ, Ramirez-Gonzalez RH, et al. Evolution of an Eurasian avian-like influenza virus in naive and vaccinated pigs. PLoS Pathogens. 2012;8(5):e1002730.", "Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science. 2014;345:1369\u20131372"]}
DOI: 10.17632/6zmsbhcvmg.1
title: Data for: How is biodiversity changing in response to ecological restoration in terrestrial ecosystems? A meta-analysis in China

description: Sheet 1: The collected studies/references Sheet 2: Dataset for this meta-analysis
DOI: 10.6073/pasta/450bcf8f9438e85c19fa8782d77b42bb
title: Connectivity from a different perspective: comparing seed dispersal kernels in connected vs. unfragmented landscapes.

description: Habitat fragmentation can create significant impediments to dispersal.
  A technique to increase dispersal between otherwise isolated fragments
  is the use of corridors. Although previous studies have compared
  dispersal between connected fragments to dispersal between unconnected
  fragments, it remains unknown how dispersal between fragments
  connected by a corridor compares to dispersal in unfragmented
  landscapes. To assess the extent to which corridors can restore
  dispersal in fragmented landscapes to levels observed in unfragmented
  landscapes, we employed a stable-isotope marking technique to track
  seeds within four unfragmented landscapes and eight experimental
  landscapes with fragments connected by corridors. We studied two wind-
  and two bird-dispersed plant species, because previous community-based
  research showed that dispersal mode explains how connectivity effects
  vary among species. We constructed dispersal kernels for these species
  in unfragmented landscapes and connected fragments by marking seeds in
  the center of each landscape with 15N and then recovering marked seeds
  in seed traps at distances up to 200 m. For the two wind-dispersed
  plants, seed dispersal kernels were similar in unfragmented landscapes
  and connected fragments. In contrast, dispersal kernels of
  bird-dispersed seeds were both affected by fragmentation and differed
  in the direction of the impact: Morella cerifera experienced more and
  Rhus copallina experienced less long-distance dispersal in
  unfragmented than in connected landscapes. These results show that
  corridors can facilitate dispersal probabilities comparable to those
  observed in unfragmented landscapes. Although dispersal mode may
  provide useful broad predictions, we acknowledge that similar species
  may respond uniquely due to factors such as seasonality and disperser
  behavior. Our results further indicate that prior work has likely
  underestimated dispersal distances of wind-dispersed plants and that
  factors altering long-distance dispersal may have a greater impact on
  the spread of species than previously thought.
DOI: 10.5281/zenodo.1409667
title: Data And Appendix For Paper "From Analytical Purposes To Data Visualizations: A Decision Process Guided By A Conceptual Framework And Eye Tracking"

description: the folder contains the following:

1. Data from the pre-experiment questionnaire provided to the participants (pre-experiment_data.xlsx)

2. Questions and answer data (answers_accuracy.xlsx)

3. Online figures appendix (figures.pdf)
DOI: 10.5281/zenodo.1409668
title: Data And Appendix For Paper "From Analytical Purposes To Data Visualizations: A Decision Process Guided By A Conceptual Framework And Eye Tracking"

description: the folder contains the following:

1. Data from the pre-experiment questionnaire provided to the participants (pre-experiment_data.xlsx)

2. Questions and answer data (answers_accuracy.xlsx)

3. Online figures appendix (figures.pdf)
DOI: 10.5281/zenodo.1409979
title: Ultimaker 2 Sensor Data For Several Print Jobs

description: This datasets were measured the same way as https://doi.org/10.5281/zenodo.54574. But instead of capturing only events, the positions of the printer head and the printer plate were measured for all print jobs of Ultimaker 2 3D printer until 2016 and combined into one file.
DOI: 10.5281/zenodo.1409980
title: Ultimaker 2 Sensor Data For Several Print Jobs

description: This datasets were measured the same way as https://doi.org/10.5281/zenodo.54574. But instead of capturing only events, the positions of the printer head and the printer plate were measured for all print jobs of Ultimaker 2 3D printer until 2016 and combined into one file.
DOI: 10.5281/zenodo.1344104
title: Dataset for the tutorial "pinpoint key pathways with Heinz"

description: The dataset for the tutorial "pinpoint key pathways with Heinz" in Galaxy training network.
description: {"references": ["May A, Brandt BW, El-Kebir M, Klau GW, Zaura E, Crielaard W, et al. metaModules identifies key functional subnetworks in microbiome-related disease. Bioinformatics. 2016 Jun 1;32(11):1678\u201385.", "Dittrich MT, Klau GW, Rosenwald A, Dandekar T, M\u00fcller T. Identifying functional modules in protein\u2013protein interaction networks: an integrated exact approach. Bioinformatics. 2008 Jul 1;24(13):i223\u201331."]}
DOI: 10.5281/zenodo.1344105
title: Dataset for the tutorial "pinpoint key pathways with Heinz"

description: The dataset for the tutorial "pinpoint key pathways with Heinz" in Galaxy training network.
description: {"references": ["May A, Brandt BW, El-Kebir M, Klau GW, Zaura E, Crielaard W, et al. metaModules identifies key functional subnetworks in microbiome-related disease. Bioinformatics. 2016 Jun 1;32(11):1678\u201385.", "Dittrich MT, Klau GW, Rosenwald A, Dandekar T, M\u00fcller T. Identifying functional modules in protein\u2013protein interaction networks: an integrated exact approach. Bioinformatics. 2008 Jul 1;24(13):i223\u201331."]}
DOI: 10.5517/ccdc.csd.cc1pp63p
title: CCDC 1569502: Experimental Crystal Structure Determination

description: Related Article: Guang-Hui Huang,  Zhu Hu,  Chun Lei,  Pei-Pei Wang,  Jing Yang,  Jing-Ya Li,  Jia Li,  and Ai-Jun Hou|2018|J.Nat.Prod.|81|1810|doi:10.1021/acs.jnatprod.8b00273
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ps0fx
title: CCDC 1572209: Experimental Crystal Structure Determination

description: Related Article: Shuklendu D. Karyakarte, Chanchamnan Um, Ilyas A. Berhane, Sherry R. Chemler|2018|Angew.Chem.,Int.Ed.|57|12921|doi:10.1002/anie.201808554
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pslrt
title: CCDC 1572777: Experimental Crystal Structure Determination

description: Related Article: Liliya A. Khamidullina, Igor S. Puzyrev, Tatiana V. Glukhareva, Svetlana A. Shatunova, Pavel A. Slepukhin, Pavel V. Dorovatovskii, Yan V. Zubavichus, Victor N. Khrustalev, Zhijin Fan, Tatiana A. Kalinina, Alexander V. Pestov|2019|J.Mol.Struct.|1176|515|doi:10.1016/j.molstruc.2018.08.112
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/73ce4cbb878bf174a977a7e421e774e9
title: Testing the relative importance of local resources and landscape connectivity on Bombus impatiens (Hymenoptera, Apidae) colonies

description: Bee populations are decreasing worldwide. The underlying causes are
  likely determined by factors at different scales. We tested the
  relative importance of local resources and landscape connectivity on
  64 bumblebee (Bombus impatiens) colonies in experimentally isolated
  and connected habitat fragments. We used colony mass, no. of workers,
  and no. of gynes to estimate colony performance. Landscape
  connectivity did not significantly affect colony performance, but
  local floral resources had a significantly positive effect, especially
  in isolated fragments. These results suggest that bumblebee colonies
  encountered sufficient floral resources within the local 1.4 ha
  habitat fragments to support colony growth, making long-distance
  foraging trips to neighboring fragments unnecessary. From a
  conservation perspective, we suggest that efforts to improve colony
  performance should prioritize boosting local floral resources over
  manipulation of large-scale landscape features.
DOI: 10.26300/h39v-zg24
title: Image and Video Data Files from "Into the Depths: Techniques for in vitro Three-Dimensional Microtissue Visualization"
DOI: 10.5061/dryad.v18jj97/1
title: Data for Mistry-Ackerman

description: Data pertaining to figures
DOI: 10.5517/ccdc.csd.cc1pslxz
title: CCDC 1572782: Experimental Crystal Structure Determination

description: Related Article: Liliya A. Khamidullina, Igor S. Puzyrev, Tatiana V. Glukhareva, Svetlana A. Shatunova, Pavel A. Slepukhin, Pavel V. Dorovatovskii, Yan V. Zubavichus, Victor N. Khrustalev, Zhijin Fan, Tatiana A. Kalinina, Alexander V. Pestov|2019|J.Mol.Struct.|1176|515|doi:10.1016/j.molstruc.2018.08.112
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1psly0
title: CCDC 1572783: Experimental Crystal Structure Determination

description: Related Article: Liliya A. Khamidullina, Igor S. Puzyrev, Tatiana V. Glukhareva, Svetlana A. Shatunova, Pavel A. Slepukhin, Pavel V. Dorovatovskii, Yan V. Zubavichus, Victor N. Khrustalev, Zhijin Fan, Tatiana A. Kalinina, Alexander V. Pestov|2019|J.Mol.Struct.|1176|515|doi:10.1016/j.molstruc.2018.08.112
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/926a0bf8486d439329be3b2eab71eee0
title: Mean body size predicts colony performance in the common eastern bumble bee (Bombus impatiens)

description: Prior studies suggest that both the mean and variation of worker size
  predict the performance of bumble bee colonies. The 'variation
  hypothesis' posits that colony performance increases with variation of
  worker body size due to more efficient division of labour within
  colonies. The 'mean size hypothesis' posits that colony performance
  increases with mean bumble bee size, as each individual’s efficiency
  tends to increase with body size.

      
  The present study tested these non-mutually exclusive hypotheses by
  establishing 62 Bombus impatiens Cresson (Hymenoptera, Apidae) nest
  boxes in 32 semi-natural savanna fragments within large-scale
  experimental landscapes in South Carolina (U.S.A.).

      
  Based on measurements of &gt; 24 000 individuals and on colony growth
  over ca. 7 weeks, our results support the mean size hypothesis, not
  the variation hypothesis.
DOI: 10.6073/pasta/f23a3be45f483d23bb09adead1fc5d53
title: Edge effects, not connectivity, determine the incidence and development of a foliar fungal plant disease

description: Using a model plant-pathogen system in a large-scale habitat corridor
  experiment, we found that corridors do not facilitate the movement of
  wind-dispersed plant pathogens, that connectivity of patches does not
  enhance levels of foliar fungal plant disease, and that edge effects
  are the key drivers of plant disease dynamics. Increased spread of
  infectious disease is often cited as a potential negative effect of
  habitat corridors used in conservation, but the impacts of corridors
  on pathogen movement have never been tested empirically. Using sweet
  corn (Zea mays) and southern corn leaf blight (Cochliobolus
  heterostrophus) as a model plant-pathogen system, we tested the
  impacts of connectivity and habitat fragmentation on pathogen movement
  and disease development at the Savannah River Site, South Carolina,
  USA. Over time, less edgy patches had higher proportions of diseased
  plants, and distance of host plants to habitat edges was the greatest
  determinant of disease development. Variation in average daytime
  temperatures provided a possible mechanism for these disease patterns.
  Our results show that worries over the potentially harmful effects of
  conservation corridors on disease dynamics are misplaced, and that, in
  a conservation context, many diseases can be better managed by
  mitigating edge effects.
DOI: 10.6073/pasta/35e85f9523986a3772c9b4d8d719fa6a
title: Habitat corridors alter relative trophic position of fire ants

description: Habitat fragmentation disrupts species movement, leading to local
  extinctions and altered community structure. Habitat corridors, which
  connect isolated patches of habitat and facilitate movement between
  patches, provide a potential solution to these negative impacts.
  However, most studies to date have examined the movement of species
  alone without considering emergent effects on the community (e.g.,
  altered trophic structure). We use large-scale, experimental
  landscapes and nitrogen stable isotopes ratios (delta-N-15) of a
  common generalist consumer (the fire ant, Solenopsis invicta) to
  determine how corridors affect trophic structure. Thus, because the
  fire ant is a species whose trophic position is flexible and whose
  diet typically reflects local prey availability, we assume that shifts
  in fire ants' trophic position between connected and isolated patches
  are likely to reflect shifts in patch trophic structure. We found that
  colonies in isolated patches had lower means and ranges of delta-N-15
  than colonies in otherwise similar connected patches, suggesting that
  corridors may increase fire ants' trophic position and breadth,
  respectively. Previous work in our landscapes documented higher
  species richness of plants in connected than unconnected patches.
  Patch means of ant delta-N-15 were positively correlated with plant
  richness, suggesting that increased plant richness may influence the
  observed responses in fire ant delta-N-15. Together these results
  suggest that fragmentation may reduce trophic position and narrow
  trophic breadth of dietary generalists such as the fire ant. These
  shifts likely reflect an alteration of food webs in isolated patches.
  Our results suggest that corridors may be effective in preventing or
  reducing such alterations.
DOI: 10.6073/pasta/4f20f94fba72ca25e6772b58c94f7bc8
title: Disentangling fragmentation effects on herbivory in understory plants of longleaf pine savanna

description: Habitat fragmentation affects species and their interactions through
  intertwined mechanisms that include changes to fragment area, shape,
  connectivity and distance to edge. Disentangling these pathways is a
  fundamental challenge of landscape ecology and will help identify
  ecological processes important for management of rare species or
  restoration of fragmented habitats. In a landscape experiment that
  manipulated connectivity, fragment shape, and distance to edge while
  holding fragment area constant, we examined how fragmentation impacts
  herbivory and growth of nine plant species in longleaf pine savanna.
  Probability of herbivory in open habitat was strongly dependent on
  proximity to forest edge for every species, increasing with distance
  to edge in six species (primarily grasses and annual forbs) and
  decreasing in three species (perennial forbs and a shrub). In the two
  species of perennial forbs, these edge effects were dependent on
  fragment shape; herbivory strongly decreased with distance to edge in
  fragments of two shapes, but not in a third shape. For most species,
  however, probability of herbivory was unrelated to connectivity or
  fragment shape. Growth was generally determined more strongly by leaf
  herbivory than by distance to edge, fragment shape, or connectivity.
  Taken together, these results demonstrate consistently strong edge
  effects on herbivory, one of the most important biotic factors
  determining plant growth and demography. Our results contrast with the
  generally inconsistent results of observational studies, likely
  because our experimental approach enabled us to tease apart landscape
  processes that are typically confounded.
DOI: 10.5061/dryad.hf2746d/1
title: Functional trait data_high altitude Himalaya

description: Data file containing leaf traits measured ifrom the high altitude vegetation of Western Himalaya