cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5217550.v1
title: Metabolomics analysis of rice responses to salinity stress revealed elevation of serotonin, and gentisic acid levels in leaves of tolerant varieties

description: A GC-MS based analytical approach was undertaken to understand the metabolomic responses of seedlings of 2 salt sensitive (Sujala and MTU 7029) and 2 tolerant varieties (Bhutnath, and Nonabokra) of indica rice (<i>Oryza sativa</i> L.) to NaCl induced stress. The 4 varieties responded differently to NaCl treatment with respect to the conserved primary metabolites (sugars, polyols, amino acids, organic acids and certain purine derivatives) of the leaf of rice seedlings. However, there were significant differences in salt induced production of chorismic acid derivatives. Serotonin level was increased in both the salt tolerant varieties in response to NaCl induced stress. In both the salt tolerant varieties, increased production of the signaling molecule gentisic acid in response to NaCl treatment was noticed. Salt tolerant varieties also produced increased level of ferulic acid and vanillic acid. In the salt sensitive varieties, cinnamic acid derivatives, 4-hydroxycinnamic acid (in Sujala) and 4-hydroxybenzoic acid (in MTU 7029), were elevated in the leaves. So increased production of the 2 signaling molecules serotonin and gentisic acid may be considered as 2 important biomarker compounds produced in tolerant varieties contributing toward NaCl tolerance.
DOI: 10.6084/m9.figshare.5217556.v1
title: A Conjugate Model for Dimensional Analysis

description: Dimensional analysis (DA) is a methodology widely used in physics and engineering. The main idea is to extract key variables based on physical dimensions. Its overlooked importance in statistics has been recognized recently. However, most literature treats DA as merely a preprocessing tool, leading to multiple statistical issues. In particular, there are three critical aspects: (a) the nonunique choice of basis quantities and dimensionless variables; (b) the statistical representation and testing of DA constraints; (c) the spurious correlations between post-DA variables. There is an immediate need for an appropriate statistical methodology that integrates DA and the quantitative modeling. In this article, we propose a power-law type of “DA conjugate” model that is useful for incorporating dimensional information and analyzing post-DA variables. Adapting the similar idea of “conjugacy” in Bayesian analysis, we show that the proposed modeling technique not only produces flexible and effective results, but also provides good solutions to the above three issues. A modified projection pursuit regression analysis is implemented to fit the additive power-law model. A numerical study on ocean wave speed is discussed in detail to illustrate and evaluate the advantages of the proposed procedure. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.5217460
title: Mycotoxins, trace elements, and phthalates in marketed rice of different origin and exposure assessment

description: The aim of this study was to determine levels of 11 mycotoxins, 10 trace elements, and 6 phthalates in rice samples from Serbian and Chinese market. Mycotoxins were not detected in any of the analysed rice samples. Results revealed similar median levels for following elements: Mn, 17.5 and 15.7 mg kg<sup>−1</sup>; Fe, 2.47 and 2.12 mg kg<sup>−1</sup>; Cu, 1.95 and 1.59 mg kg<sup>−1</sup> in marketed samples from Serbia and China, respectively. Median concentration of Ni in Serbian marketed samples was 1.9 times higher than in Chinese ones. The median levels (µg kg<sup>−1</sup>) of phthalates ranged from 1.2 (benzylbutyl phthalate [BBP]) – 566 (di(2-ethyl-hexyl) phthalate [DEHP]) and 1.7 (BBP) – 348 (DEHP) in Serbian and Chinese marketed samples, respectively. The results were used to assess daily exposure of Serbian and Chinese adult consumers. The calculated target hazard quotients indicated that the potential risk attributable to the analysed contaminants in rice samples should not be of concern neither for the Serbian nor the Chinese consumers.
DOI: 10.6084/m9.figshare.5217418
title: Reading Proofs for Validation and Comprehension: An Expert-Novice Eye-Movement Study: Stimuli

description: The proofs used in the study described in the paper "Reading Proofs for Validation and Comprehension: An Expert-Novice Eye-Movement Study"
DOI: 10.6084/m9.figshare.5217433
title: Supplementary Material for: Altered Expression of Endoplasmic Reticulum Stress-Related Genes in the Middle Frontal Cortex of Subjects with Autism Spectrum Disorder

description: The endoplasmic reticulum (ER) is an important organelle responsible for the folding and sorting of proteins. Disturbances in ER homeostasis can trigger a cellular response known as the unfolded protein response, leading to accumulation of unfolded or misfolded proteins in the ER lumen called ER stress. A number of recent studies suggest that mutations in autism spectrum disorder (ASD)-susceptible synaptic genes induce ER stress. However, it is not known whether ER stress-related genes are altered in the brain of ASD subjects. In the present study, we investigated the mRNA expression of ER stress-related genes (ATF4, ATF6, PERK, XBP1, sXBP1, CHOP, and IRE1) in the postmortem middle frontal gyrus of ASD and control subjects. RT-PCR analysis showed significant increases in the mRNA levels of ATF4, ATF6, PERK, XBP1, CHOP, and IRE1 in the middle frontal gyrus of ASD subjects. In addition, we found a significant positive association of mRNA levels of ER stress genes with the diagnostic score for stereotyped behavior in ASD subjects. These results, for the first time, provide the evidence of the dysregulation of ER stress genes in the brain of subjects with ASD.
DOI: 10.6084/m9.figshare.5217460.v1
title: Mycotoxins, trace elements, and phthalates in marketed rice of different origin and exposure assessment

description: The aim of this study was to determine levels of 11 mycotoxins, 10 trace elements, and 6 phthalates in rice samples from Serbian and Chinese market. Mycotoxins were not detected in any of the analysed rice samples. Results revealed similar median levels for following elements: Mn, 17.5 and 15.7 mg kg<sup>−1</sup>; Fe, 2.47 and 2.12 mg kg<sup>−1</sup>; Cu, 1.95 and 1.59 mg kg<sup>−1</sup> in marketed samples from Serbia and China, respectively. Median concentration of Ni in Serbian marketed samples was 1.9 times higher than in Chinese ones. The median levels (µg kg<sup>−1</sup>) of phthalates ranged from 1.2 (benzylbutyl phthalate [BBP]) – 566 (di(2-ethyl-hexyl) phthalate [DEHP]) and 1.7 (BBP) – 348 (DEHP) in Serbian and Chinese marketed samples, respectively. The results were used to assess daily exposure of Serbian and Chinese adult consumers. The calculated target hazard quotients indicated that the potential risk attributable to the analysed contaminants in rice samples should not be of concern neither for the Serbian nor the Chinese consumers.
DOI: 10.6084/m9.figshare.5217418.v1
title: Reading Proofs for Validation and Comprehension: An Expert-Novice Eye-Movement Study: Stimuli

description: The proofs used in the study described in the paper "Reading Proofs for Validation and Comprehension: An Expert-Novice Eye-Movement Study"
DOI: 10.6084/m9.figshare.5217382
title: NSF Graduate Research Fellowship (2014)

description: 2014 NSF GRFP proposal. Unsuccessful.
DOI: 10.6084/m9.figshare.5217379
title: Supplementary Material for: Karyotype Evolution and Phylogenetic Relationships of Cricetulus sokolovi Orlov et Malygin 1988 (Cricetidae, Rodentia) Inferred from Chromosomal Painting and Molecular Data

description: Sokolov's dwarf hamster (<i>Cricetulus sokolovi</i>) is the least studied representative of the striped hamsters (<i>Cricetulus barabensis</i> species group), the taxonomy of which remains controversial. The species was described based on chromosome morphology, but neither the details of the karyotype nor the phylogenetic relationships with other <i>Cricetulus</i> are known. In the present study, the karyotype of <i>C. sokolovi</i> was examined using cross-species chromosome painting. Molecular and cytogenetic data were employed to determine the phylogenetic position of Sokolov's hamster and to analyze the potential pathways of chromosome evolution in <i>Cricetulus</i>. Both the chromosome and molecular data support the species status of Sokolov's hamster. Phylogenetic analysis of the <i>CYTB</i> data placed <i>C. sokolovi</i> as sister to all other striped hamsters (sequence divergence of 8.1%). FISH data revealed that the karyotype of <i>C. sokolovi</i> is highly rearranged, with the most parsimonious scenario of its origin implying at least 4 robertsonian events and a centromere shift. Comparative cytogenetic data on Cricetinae suggest that their evolutionary history includes both periods of chromosomal conservatism and episodes of rapid chromosomal change.
DOI: 10.6084/m9.figshare.5217373
title: NSF Graduate Research Fellowship Proposal (2015)

description: NSF GRFP application submitted Fall of 2015. Successful.
DOI: 10.6084/m9.figshare.5217379.v1
title: Supplementary Material for: Karyotype Evolution and Phylogenetic Relationships of Cricetulus sokolovi Orlov et Malygin 1988 (Cricetidae, Rodentia) Inferred from Chromosomal Painting and Molecular Data

description: Sokolov's dwarf hamster (<i>Cricetulus sokolovi</i>) is the least studied representative of the striped hamsters (<i>Cricetulus barabensis</i> species group), the taxonomy of which remains controversial. The species was described based on chromosome morphology, but neither the details of the karyotype nor the phylogenetic relationships with other <i>Cricetulus</i> are known. In the present study, the karyotype of <i>C. sokolovi</i> was examined using cross-species chromosome painting. Molecular and cytogenetic data were employed to determine the phylogenetic position of Sokolov's hamster and to analyze the potential pathways of chromosome evolution in <i>Cricetulus</i>. Both the chromosome and molecular data support the species status of Sokolov's hamster. Phylogenetic analysis of the <i>CYTB</i> data placed <i>C. sokolovi</i> as sister to all other striped hamsters (sequence divergence of 8.1%). FISH data revealed that the karyotype of <i>C. sokolovi</i> is highly rearranged, with the most parsimonious scenario of its origin implying at least 4 robertsonian events and a centromere shift. Comparative cytogenetic data on Cricetinae suggest that their evolutionary history includes both periods of chromosomal conservatism and episodes of rapid chromosomal change.
DOI: 10.6084/m9.figshare.5217358
title: Learning for social-ecological change: a qualitative review of outcomes across empirical literature in natural resource management

description: Learning is considered as a promising mechanism to cope with rapid environmental change. The implications of learning for natural resource management (NRM) have not been explored in-depth and the evidence on the topic is scattered across multiple sources. We provide a qualitative review of types of learning outcomes and consider their manifestations in NRM across selected empirical literature. We conducted a systematic search of the peer-reviewed literature (<i>N</i> = 1,223) and a qualitative meta-synthesis of included articles, with an explicit focus on learning outcomes and NRM changes (<i>N</i> = 53). Besides social learning, we found several learning concepts used, including policy and transformative learning, and multiple links between learning and NRM reported. We observe that the development of skills, together with a system approach involving multi-level capacities, is decisive for implications of learning for NRM. Future reviews could systematically compare how primary research applies different learning concepts and discusses links between learning and NRM changes.
DOI: 10.6084/m9.figshare.5217358.v1
title: Learning for social-ecological change: a qualitative review of outcomes across empirical literature in natural resource management

description: Learning is considered as a promising mechanism to cope with rapid environmental change. The implications of learning for natural resource management (NRM) have not been explored in-depth and the evidence on the topic is scattered across multiple sources. We provide a qualitative review of types of learning outcomes and consider their manifestations in NRM across selected empirical literature. We conducted a systematic search of the peer-reviewed literature (<i>N</i> = 1,223) and a qualitative meta-synthesis of included articles, with an explicit focus on learning outcomes and NRM changes (<i>N</i> = 53). Besides social learning, we found several learning concepts used, including policy and transformative learning, and multiple links between learning and NRM reported. We observe that the development of skills, together with a system approach involving multi-level capacities, is decisive for implications of learning for NRM. Future reviews could systematically compare how primary research applies different learning concepts and discusses links between learning and NRM changes.
DOI: 10.6084/m9.figshare.5217292
title: Exploring uncertainties in terrain feature extraction across multi-scale, multi-feature, and multi-method approaches for variable terrain

description: Terrain analysis uses different workflows to extract features from terrain models for the purpose of understanding topographic patterns and processes. However, the results of different workflows often conflict, leading to uncertainties about feature locations. Instead of relying upon a single workflow, we suggest that a fusion of information from multiple workflows better informs terrain analysis. From terrain data with different degrees of variability, we extracted terrain features related to the set of topographic surface network feature classes {peaks, pits, saddles, ridges, courses} using workflows from free, open-source, and commercial software. A multi-scale analysis produced terrain features with fuzzy membership values for various feature classes and revealed that terrain locations can exhibit characteristics of all classes. Multi-feature maps were created by determining at each location the dominant and second-ranked features, and an uncertainty value. Our multi-method approach incorporated all of the workflows’ multi-scale results and again produced multi-feature maps that increased the confidence of some features and reduced the signal of dissimilar results. We also found that high variability terrain produced crisper features in both spatial extent and membership strength. Our overall conclusion is that multi-scale, multi-feature, and multi-method analyses clarify terrain feature uncertainty.
DOI: 10.6084/m9.figshare.5217292.v1
title: Exploring uncertainties in terrain feature extraction across multi-scale, multi-feature, and multi-method approaches for variable terrain

description: Terrain analysis uses different workflows to extract features from terrain models for the purpose of understanding topographic patterns and processes. However, the results of different workflows often conflict, leading to uncertainties about feature locations. Instead of relying upon a single workflow, we suggest that a fusion of information from multiple workflows better informs terrain analysis. From terrain data with different degrees of variability, we extracted terrain features related to the set of topographic surface network feature classes {peaks, pits, saddles, ridges, courses} using workflows from free, open-source, and commercial software. A multi-scale analysis produced terrain features with fuzzy membership values for various feature classes and revealed that terrain locations can exhibit characteristics of all classes. Multi-feature maps were created by determining at each location the dominant and second-ranked features, and an uncertainty value. Our multi-method approach incorporated all of the workflows’ multi-scale results and again produced multi-feature maps that increased the confidence of some features and reduced the signal of dissimilar results. We also found that high variability terrain produced crisper features in both spatial extent and membership strength. Our overall conclusion is that multi-scale, multi-feature, and multi-method analyses clarify terrain feature uncertainty.
DOI: 10.21227/ravy-tc45
title: New observation- C

description: This dataset is in support of my claim to new observation on " " submitted to IEEE Transactions on Circuits and Systems IC
DOI: 10.6084/m9.figshare.5217277
title: DIY video with smartphones

description: A workshop presentation on creating videos with smartphone technology was run at the NLS8, 2017. In this workshop, participants were provided with the tools to create a video using smartphones and then provided the opportunity to create a final video to share. The presentation and resource kit are included. The resource kit provides instructions on the use of Cute Cut Pro editing app for smartphones.
DOI: 10.6084/m9.figshare.5217262
title: From chaos to calm through storytelling and community building in GLAM and beyond: A journey and conversation about Knowledge Management

description: Knowledge Management (KM) can help us learn to better understand and thrive in the face of the ever-changing, unknown and often chaotic digital environment by giving us strategies and tools to learn through collaboration, stories, playing and experimenting with ideas and technology, and reflection. KM has given us the tools to start thriving in this environment and we want to share and discuss them with you. In this presentation, we provided a brief introduction to knowledge management and insight into our experiences with KM from small community and activist organisations to large universities. We discussed community of practice, storytelling and more experiences to help illustrate success and risk factors of these tools for managing tacit knowledge that often resonate with GLAM professionals. Through this and our Amazine Knowledge Adventure Time booklet, we hoped to start a dialogue by encouraging the audience to reflect on and share their own experiences with KM, giving them strategies and tools for advocacy, activism, and community building within the sector and with the communities they serve.
DOI: 10.6084/m9.figshare.5217277.v1
title: DIY video with smartphones

description: A workshop presentation on creating videos with smartphone technology was run at the NLS8, 2017. In this workshop, participants were provided with the tools to create a video using smartphones and then provided the opportunity to create a final video to share. The presentation and resource kit are included. The resource kit provides instructions on the use of Cute Cut Pro editing app for smartphones.
DOI: 10.6084/m9.figshare.5217232
title: Stock network of China by mutual funds holdings

description: <br>1. The '2014-2_95_node_clean.graphml' and '2015-1_95_node_clean.graphml' contain the stock networks established by the mutual funds holding data on Dec 31, 2014 and Jun 30, 2015 accordingly. The original data of mutual funds holding is provided by Wind Information, which is not publicly available due to Wind’s license requirement.<br>2. The series of files named as ‘*percentage_change.csv’ includes the results of stocks’ intraday percentage changes. The first eight number in the filename specify the date. The ‘1min’ and ‘10min’ in the filename specify the granularity. These data are calculated from the intraday price trends data provided by Thomson Reuters’ Tick History. The original price trends data is not publicly available due to the company’s license requirement<br>3. The ‘style_and_industry.xlsx’ describes which industry and which kind of investment style a stock belongs to, which is also downloaded from Wind Information.<br>Due to license requirements of the data companies, all of the above files have converted the names of stocks into integers in a consistent way. <br>----updated on 2018/02/194. The ‘mutual_fund_names_Fig3.xlsx’ describes the tick label of y-axis in Fig. 3 (heatmap) and corresponding name of mutual fund company.
DOI: 10.6084/m9.figshare.5217232.v1
title: Stock network of China by mutual funds holdings

description: <br>1. The '2014-2_95_node_clean.graphml' and '2015-1_95_node_clean.graphml' contain the stock networks established by the mutual funds holding data on Dec 31, 2014 and Jun 30, 2015 accordingly. The original data of mutual funds holding is provided by Wind Information, which is not publicly available due to Wind’s license requirement.<br>2. The series of files named as ‘*percentage_change.csv’ includes the results of stocks’ intraday percentage changes. The first eight number in the filename specify the date. The ‘1min’ and ‘10min’ in the filename specify the granularity. These data are calculated from the intraday price trends data provided by Thomson Reuters’ Tick History. The original price trends data is not publicly available due to the company’s license requirement<br>3. The ‘style_and_industry.xlsx’ describes which industry and which kind of investment style a stock belongs to, which is also downloaded from Wind Information.<br>Due to license requirements of the data companies, all of the above files have converted the names of stocks into integers in a consistent way. <br>
DOI: 10.6084/m9.figshare.5217232.v2
title: Stock network of China by mutual funds holdings

description: <br>1. The '2014-2_95_node_clean.graphml' and '2015-1_95_node_clean.graphml' contain the stock networks established by the mutual funds holding data on Dec 31, 2014 and Jun 30, 2015 accordingly. The original data of mutual funds holding is provided by Wind Information, which is not publicly available due to Wind’s license requirement.<br>2. The series of files named as ‘*percentage_change.csv’ includes the results of stocks’ intraday percentage changes. The first eight number in the filename specify the date. The ‘1min’ and ‘10min’ in the filename specify the granularity. These data are calculated from the intraday price trends data provided by Thomson Reuters’ Tick History. The original price trends data is not publicly available due to the company’s license requirement<br>3. The ‘style_and_industry.xlsx’ describes which industry and which kind of investment style a stock belongs to, which is also downloaded from Wind Information.<br>Due to license requirements of the data companies, all of the above files have converted the names of stocks into integers in a consistent way. <br>----updated on 2018/02/194. The ‘mutual_fund_names_Fig3.xlsx’ describes the tick label of y-axis in Fig. 3 (heatmap) and corresponding name of mutual fund company.
DOI: 10.6084/m9.figshare.5217202
title: Moderate anemia at diagnosis is an independent prognostic marker of the EUTOS, Sokal, and Hasford scores for survival and treatment response in chronic-phase, chronic myeloid leukemia patients with frontline imatinib

description: <b>Objectives:</b> This study aimed to examine the prognostic value of anemia for the diagnosis of chronic myeloid leukemia in the chronic phase (CML-CP) receiving imatinib. <b>Methods:</b> One hundred and fifty-four CML-CP patients were enrolled. The influences of moderate anemia with hemoglobin (Hb) <b>Results:</b> Moderate anemia was identified in 44 (28.6%) patients. These patients had more aggressive baseline features and higher risks, as assessed by scoring systems, and less favorable treatment responses vs those without anemia, including 3M-EMR (50.0% vs 69.1%), a complete cytogenetic response at 6 months (20.5% vs 50.9%), and a major molecular response at 12 months (22.5% vs 45.2%), with a median follow-up of 54.0 months. Furthermore, an Hb of 10 g/dl better distinguished DMR, EFS, PFS, and OS than the EUTOS, Sokal, and Hasford scores, and better predicted the responses and survivals in combination with 3M-EMR than 3M-EMR alone. <b>Conclusions:</b> This finding highlights the significance of anemia in CML-CP, and suggests that patients with anemia at diagnosis should be carefully monitored and might benefit from more potent TKIs if not achieving 3M-EMR.