cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7946624
title: Design and analysis of confirmation experiments

description: The statistical literature and practitioners have long advocated the use of confirmation experiments as the final stage of a sequence of designed experiments to verify that the optimal operating conditions identified as part of a response surface methodology strategy are attainable and able to achieve the value of the response desired. However, until recently there has been a gap between this recommendation and details about how to perform an analysis to quantitatively assess whether the confirmation runs are adequate. Similarly, there has been little in the way of specific recommendations for the number and nature of the confirmation runs that should be performed. In this article, we propose analysis methods to assess agreement between the mean response from previous experiments and the confirmation experiment, and suggest a strategy for the design of confirmation experiments that more fully explores the region around the optimum.
DOI: 10.6084/m9.figshare.7946627.v1
title: gVCF_NA20846

description: 1000 Genomes gVCF mapped to hs37d5 for NA20846. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879845
title: Additional file 2 of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file 2:Yam sequences annotated using Mercator tool of MapMan database. Yam ESTs for three libraries with MapMan annotations were presented in sheet 1, Mapping file generated from Mercator tool with Bin Codes for each yam EST matching to specific genes on sheet 2 and unique Bin IDs identified in each library related to anthracnose were listed on sheet 3 of the file. (XLS 13 MB)
DOI: 10.6084/m9.figshare.12879845.v1
title: Additional file 2 of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file 2:Yam sequences annotated using Mercator tool of MapMan database. Yam ESTs for three libraries with MapMan annotations were presented in sheet 1, Mapping file generated from Mercator tool with Bin Codes for each yam EST matching to specific genes on sheet 2 and unique Bin IDs identified in each library related to anthracnose were listed on sheet 3 of the file. (XLS 13 MB)
DOI: 10.6084/m9.figshare.7946600.v1
title: gVCF_NA18545

description: 1000 Genomes gVCF mapped to hs37d5 for NA18545. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946624.v1
title: Design and analysis of confirmation experiments

description: The statistical literature and practitioners have long advocated the use of confirmation experiments as the final stage of a sequence of designed experiments to verify that the optimal operating conditions identified as part of a response surface methodology strategy are attainable and able to achieve the value of the response desired. However, until recently there has been a gap between this recommendation and details about how to perform an analysis to quantitatively assess whether the confirmation runs are adequate. Similarly, there has been little in the way of specific recommendations for the number and nature of the confirmation runs that should be performed. In this article, we propose analysis methods to assess agreement between the mean response from previous experiments and the confirmation experiment, and suggest a strategy for the design of confirmation experiments that more fully explores the region around the optimum.
DOI: 10.6084/m9.figshare.7946621.v1
title: Orthogonal blocking arrangements for 24-run and 28-run two-level designs

description: Much research has been done concerning 24-run orthogonal two-level designs involving 3–23 factors and 28-run orthogonal two-level designs involving 3–27 factors. The focus of this research was on completely randomized screening designs and led to lists of recommended designs for each number of factors. When using the recommended designs, there is either no aliasing between the main effects and the two-factor interaction effects or only a limited amount. Among all designs with this attractive property, the recommended designs minimize the aliasing among the two-factor interaction effects. It is, however, unclear which 24- and 28-run designs are best when complete randomization is infeasible and the designs have to be arranged in blocks. In this article, we address this issue and present the best arrangements of 24-run designs in 3, 4, and 6 blocks and the best arrangements of 28-run designs in 7 blocks.
DOI: 10.6084/m9.figshare.12879851
title: Additional file 4 of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file 4:Simple Sequence Repeat (SSR) primers generated from the project. The SSR primers generated from library TDa 95-310, TDa 95-0328 and TDa 87-01091 were respectively presented on sheet 1, 2 and 3 of the file. (XLS 992 KB)
DOI: 10.6084/m9.figshare.12879863.v2
title: Additional file of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection
DOI: 10.6084/m9.figshare.12879863.v3
title: Additional file of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection
DOI: 10.6084/m9.figshare.12879863.v4
title: Additional file of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection
DOI: 10.6084/m9.figshare.12879863.v5
title: Additional file of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection
DOI: 10.6084/m9.figshare.7946501
title: gVCF_NA20845

description: 1000 Genomes gVCF mapped to hs37d5 for NA20845. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879863.v6
title: Additional file of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection
DOI: 10.6084/m9.figshare.7946501.v1
title: gVCF_NA20845

description: 1000 Genomes gVCF mapped to hs37d5 for NA20845. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879872.v1
title: Additional file 2 of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file 2:Output of BINGO analysis of Entrez gene ID's of bona fide annotated genes found in additional file1(XLS 30 KB)
DOI: 10.6084/m9.figshare.12879875
title: Additional file 3 of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file 3:Table of differentially expressed genes (threshold adjusted P-value 0.5) in rat kidney 8 h post-infection(XLS 124 KB)
DOI: 10.6084/m9.figshare.12879881
title: Additional file 5 of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file 5:Table of differentially expressed genes (threshold Bayes &gt; -2.5) in rat kidney 5 h post-infection(XLS 92 KB)
DOI: 10.6084/m9.figshare.7946498
title: gVCF_NA18544

description: 1000 Genomes gVCF mapped to hs37d5 for NA18544. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879869
title: Additional file 1 of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file 1:Table of differentially expressed genes (thresholds adjusted P-value 0.05, fold expression &gt;2) in rat kidney 8 h post-infection(XLS 34 KB)
DOI: 10.6084/m9.figshare.7946489
title: gVCF_NA20832

description: 1000 Genomes gVCF mapped to hs37d5 for NA20832. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879881.v1
title: Additional file 5 of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file 5:Table of differentially expressed genes (threshold Bayes &gt; -2.5) in rat kidney 5 h post-infection(XLS 92 KB)
DOI: 10.6084/m9.figshare.12879671.v1
title: Aquaplanet model data.

description: Data published in Talib et al., (submitted), The effect of atmosphere-ocean coupling on the sensitivity of the ITCZ to convective mixing. <br><br>All simulations use an aquaplanet configuration of the U.K. Met Office Unified Model Global Atmosphere 6.0 at an N96 resolution. Three different model configurations are used including: (1) an atmosphere-ocean coupled configuration where the ocean is represented by an idealised two-layer model; (2) an atmosphere-ocean coupled configuration with a prescribed ocean energy transport; (3) prescribed sea surface temperature simulations. In this study we investigate the sensitivity of the ITCZ to convective mixing in all three configurations.
DOI: 10.6084/m9.figshare.12879869.v1
title: Additional file 1 of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file 1:Table of differentially expressed genes (thresholds adjusted P-value 0.05, fold expression &gt;2) in rat kidney 8 h post-infection(XLS 34 KB)
DOI: 10.6084/m9.figshare.12879671
title: Aquaplanet model data.

description: Data published in Talib et al., (submitted), The effect of atmosphere-ocean coupling on the sensitivity of the ITCZ to convective mixing. <br><br>All simulations use an aquaplanet configuration of the U.K. Met Office Unified Model Global Atmosphere 6.0 at an N96 resolution. Three different model configurations are used including: (1) an atmosphere-ocean coupled configuration where the ocean is represented by an idealised two-layer model; (2) an atmosphere-ocean coupled configuration with a prescribed ocean energy transport; (3) prescribed sea surface temperature simulations. In this study we investigate the sensitivity of the ITCZ to convective mixing in all three configurations.
DOI: 10.6084/m9.figshare.12879878.v1
title: Additional file 4 of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file 4:Output of BINGO analysis of Entrez gene ID's found in additional file3(XLS 56 KB)
DOI: 10.6084/m9.figshare.12879872
title: Additional file 2 of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file 2:Output of BINGO analysis of Entrez gene ID's of bona fide annotated genes found in additional file1(XLS 30 KB)
DOI: 10.6084/m9.figshare.12879875.v1
title: Additional file 3 of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file 3:Table of differentially expressed genes (threshold adjusted P-value 0.5) in rat kidney 8 h post-infection(XLS 124 KB)
DOI: 10.6084/m9.figshare.12879878
title: Additional file 4 of Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

description: Additional file 4:Output of BINGO analysis of Entrez gene ID's found in additional file3(XLS 56 KB)
DOI: 10.6084/m9.figshare.7946447
title: gVCF_NA20828

description: 1000 Genomes gVCF mapped to hs37d5 for NA20828. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946453
title: gVCF_NA18543

description: 1000 Genomes gVCF mapped to hs37d5 for NA18543. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946447.v1
title: gVCF_NA20828

description: 1000 Genomes gVCF mapped to hs37d5 for NA20828. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946438
title: Factor_RV

description: Ridge-RV estimates of Market, Size, Value, Investment, Profitability, and Momentum Factor. Calculation according to Becker and Leschinski (2018). <i>Estimating the Volatility of Asset Pricing Factors</i>. No. dp-631. Leibniz Universität Hannover, Wirtschaftswissenschaftliche Fakultät<br>
DOI: 10.6084/m9.figshare.7946453.v1
title: gVCF_NA18543

description: 1000 Genomes gVCF mapped to hs37d5 for NA18543. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946429
title: Rab17 mediates intermixing of phagocytosed apoptotic cells with recycling endosomes

description: Efferocytosis—the phagocytic removal of apoptotic cells—is required for preventing the presentation of apoptotic cell-derived antigens. This process is regulated by Rab17-dependent sorting of efferocytosed cargos from the phagolysosome to recycling endosomes. In this study we demonstrate that Rab17 is rapidly recruited to efferosomes, followed by migration of the efferosome to the cell center where it intermixes with lysosomes and undergoes Rab17-dependent vesiculation. These efferosome-derived vesicles then traffic in a Rab17-dependent manner to the cell periphery, where they transfer cargo to recycling endosomes. Combined, our observations support a model wherein efferosomes migrate to the cell center to acquire degradative enzymes, followed by peripheral migration to prevent further phagolysosome maturation and to enable cargo transfer to recycling endosomes.
DOI: 10.6084/m9.figshare.7946429.v1
title: Rab17 mediates intermixing of phagocytosed apoptotic cells with recycling endosomes

description: Efferocytosis—the phagocytic removal of apoptotic cells—is required for preventing the presentation of apoptotic cell-derived antigens. This process is regulated by Rab17-dependent sorting of efferocytosed cargos from the phagolysosome to recycling endosomes. In this study we demonstrate that Rab17 is rapidly recruited to efferosomes, followed by migration of the efferosome to the cell center where it intermixes with lysosomes and undergoes Rab17-dependent vesiculation. These efferosome-derived vesicles then traffic in a Rab17-dependent manner to the cell periphery, where they transfer cargo to recycling endosomes. Combined, our observations support a model wherein efferosomes migrate to the cell center to acquire degradative enzymes, followed by peripheral migration to prevent further phagolysosome maturation and to enable cargo transfer to recycling endosomes.
DOI: 10.6084/m9.figshare.7946396
title: gVCF_NA20827

description: 1000 Genomes gVCF mapped to hs37d5 for NA20827. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946396.v1
title: gVCF_NA20827

description: 1000 Genomes gVCF mapped to hs37d5 for NA20827. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879929.v3
title: Additional file of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins
DOI: 10.6084/m9.figshare.12879929.v2
title: Additional file of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins
DOI: 10.6084/m9.figshare.7946321
title: gVCF_NA20826

description: 1000 Genomes gVCF mapped to hs37d5 for NA20826. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946345
title: gVCF_NA18542

description: 1000 Genomes gVCF mapped to hs37d5 for NA18542. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879929.v4
title: Additional file of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins
DOI: 10.6084/m9.figshare.7946291
title: gVCF_NA18541

description: 1000 Genomes gVCF mapped to hs37d5 for NA18541. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946321.v1
title: gVCF_NA20826

description: 1000 Genomes gVCF mapped to hs37d5 for NA20826. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946345.v1
title: gVCF_NA18542

description: 1000 Genomes gVCF mapped to hs37d5 for NA18542. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879929.v5
title: Additional file of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins
DOI: 10.6084/m9.figshare.7946291.v1
title: gVCF_NA18541

description: 1000 Genomes gVCF mapped to hs37d5 for NA18541. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879929.v6
title: Additional file of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins
DOI: 10.6084/m9.figshare.12879935.v1
title: Additional file 1 of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file 1:Table S1: Putative Inc proteins from C. muridarium. (XLS 32 KB)
DOI: 10.6084/m9.figshare.12879941
title: Additional file 3 of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file 3:Table S3: Putative Inc proteins from C. caviae. (XLS 36 KB)
DOI: 10.6084/m9.figshare.12879938
title: Additional file 2 of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file 2:Table S2: Putative Inc proteins from C. felis. (XLS 36 KB)
DOI: 10.6084/m9.figshare.12879947
title: Additional file 5 of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file 5:Table S5: Putative Inc proteins from Candidatus ' Protochlamydia amoebophila' UWE25. (XLS 36 KB)
DOI: 10.6084/m9.figshare.12879947.v1
title: Additional file 5 of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file 5:Table S5: Putative Inc proteins from Candidatus ' Protochlamydia amoebophila' UWE25. (XLS 36 KB)
DOI: 10.6084/m9.figshare.7946273
title: Euthymia in Diabetes: Clinical Evidence and Practice-Based Opinion from an International Expert Group

description: Full copyright for enhanced digital features is owned by the authors. <strong>Article full text</strong> <br> The full text of this article can be found <b>here</b>. <br> <br> <strong>Provide enhanced digital features for this article</strong><br> If you are an author of this publication and would like to provide additional enhanced digital features for your article then please contact adisrapidplus@springer.com.<br> <br> The journal offers a range of additional features designed to increase visibility and readership. All features will be thoroughly peer reviewed to ensure the content is of the highest scientific standard and all features are marked as ‘peer reviewed’ to ensure readers are aware that the content has been reviewed to the same level as the articles they are being presented alongside. Moreover, all sponsorship and disclosure information is included to provide complete transparency and adherence to good publication practices. This ensures that however the content is reached the reader has a full understanding of its origin. No fees are charged for hosting additional open access content.<br> <br> Other enhanced features include, but are not limited to:<br> • Slide decks<br> • Videos and animations<br> • Audio abstracts<br> • Audio slides
DOI: 10.6084/m9.figshare.12879935
title: Additional file 1 of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file 1:Table S1: Putative Inc proteins from C. muridarium. (XLS 32 KB)
DOI: 10.6084/m9.figshare.12879938.v1
title: Additional file 2 of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file 2:Table S2: Putative Inc proteins from C. felis. (XLS 36 KB)
DOI: 10.6084/m9.figshare.12879941.v1
title: Additional file 3 of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file 3:Table S3: Putative Inc proteins from C. caviae. (XLS 36 KB)
DOI: 10.6084/m9.figshare.7946267
title: gVCF_NA20822

description: 1000 Genomes gVCF mapped to hs37d5 for NA20822. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946273.v1
title: Euthymia in Diabetes: Clinical Evidence and Practice-Based Opinion from an International Expert Group

description: Full copyright for enhanced digital features is owned by the authors. <strong>Article full text</strong> <br> The full text of this article can be found <b>here</b>. <br> <br> <strong>Provide enhanced digital features for this article</strong><br> If you are an author of this publication and would like to provide additional enhanced digital features for your article then please contact adisrapidplus@springer.com.<br> <br> The journal offers a range of additional features designed to increase visibility and readership. All features will be thoroughly peer reviewed to ensure the content is of the highest scientific standard and all features are marked as ‘peer reviewed’ to ensure readers are aware that the content has been reviewed to the same level as the articles they are being presented alongside. Moreover, all sponsorship and disclosure information is included to provide complete transparency and adherence to good publication practices. This ensures that however the content is reached the reader has a full understanding of its origin. No fees are charged for hosting additional open access content.<br> <br> Other enhanced features include, but are not limited to:<br> • Slide decks<br> • Videos and animations<br> • Audio abstracts<br> • Audio slides
DOI: 10.6084/m9.figshare.12879944
title: Additional file 4 of Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

description: Additional file 4:Table S4: Putative Inc proteins from C. abortus. (XLS 34 KB)