cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24781506.v1
title: Trunk Kinematics Data

description: This trunk kinematic dataset contains computational modelling and experimental data that were measured by a self-developed wearable sensor called the Inertial measurement cluster (IMC). The sensor directly measures and records the angular velocity and the angular acceleration vector of the rigid body to which it is attached.In general, remote monitoring and evaluation of human motion during daily life require accurate extraction of kinematic quantities of body segments. Current approaches use inertial sensors that require numerical time differentiation to access the angular acceleration vector, a mathematical operation that greatly increases noise in the acceleration value. In this research, we use the IMC to measure the trunk's angular velocity and acceleration vector directly during perturbed locomotion. To demonstrate the accuracy of tracking angular acceleration vectors, we used computational modelling and experimental data. As an application, we showed a framework for automatic assessment of experimental fall initiation and balance recovery responses.
DOI: 10.6084/m9.figshare.5086357.v1
title: Open Science Repository for 'On the Status and Future of Peer Review in Software Engineering'

description: The present repository contains the raw data and the instrument of a survey on the status and future of peer review in software engineering. The study is about the status quo and problems in the software engineering peer review process as perceived by members (authors and reviewers) of the ICSE community. The respondents report experienced problems and they contribute suggestions for improving peer review practices based on a mix of qualitative and quantitative questions. The survey was designed, carried out, and analyzed by Daniel Graziotin, Daniel Méndez, and Lutz Prechelt.<br>The present repository contains:- a README.txt file,- the questionnaire (questionnaire_structure.pdf), - the collected raw data (including the answers to the open questions; anonymized_raw_data.xlsx), - the results of the open coding (annotations and codebooks; anonymized_raw_data.xlsx and codebook.xlsx),- the statistical and plotting R routines (statistical-plotting-routines.zip), - and the resulting plots (statistical-plotting-routines.zip). <br>We applied the following anonymization changes to the raw data:<br>- Replaced any publishing venue with [XYZ]- Replaced any name calling with [XYZ]- Deleted demographic columns that could (in theory) help in doxxing participants (i.e., nationality, number of papers published at ICSE, number of appearances to ICSE PC)
DOI: 10.6084/m9.figshare.27176037.v1
title: Reaserch results

description: 155 briquettes of bituminous mix modified with HDPE were prepared, and their mechanical properties were quantified using the Marshall test.
DOI: 10.6084/m9.figshare.28735217.v1
title: Sub-Planckian Resonance and the Cognitive Field: AFoundational Framework for Thought Curvature andWaveform Feedback

description: This paper is a direct continuation of the Fractal Fluid Space-Time (FFST) model developed in https://doi.org/10.6084/m9.figshare.28466540.v27\cite{ffst2025}, where the structure of space-time was modeled as a recursive, scale-invariant fluid capable of supporting curvature, torsion, and dynamic wave interaction. In that framework, space-time was shown to behave as a fractal field whose local density and pressure structures influenced rotational dynamics, gravitational behavior, and quantum coupling. The present work extends that formulation into the neurophysical domain, proposing that cognition is itself a fluid-structured waveform interaction arising from sub-Planckian resonance within this field. All variables introduced herein, including $\rho_f(x,t)$, $\Gamma_c(t)$, and $\mathcal{R}_n$ feedback layers, derive from or are consistent with FFST's foundational terms.<br>
DOI: 10.6084/m9.figshare.7518596.v1
title: Correlation between bilingual linguistic experience factors and inhibitory control

description: Abstract: There is an ongoing debate in the literature on the hypothesis of a bilingual advantage in the executive functions and linguistic factors possibly related to it. This exploratory research aimed to investigate which bilingual linguistic experience factors could be correlated to inhibitory control. It was found that the inhibitory control correlated negatively to the amount of mixing (of two or more languages while speaking) the bilinguals performed. There was also a negative correlation between inhibitory control and the mean age of acquisition of a third language. The evidence goes against the conceptions on the relationship between linguistic experience factors and executive functions found in the literature, which would predict that the amount of mixing and age of acquisition of a third language would be associated with higher inhibitory control.
DOI: 10.17632/mkxfkry2rm.1
title: The relationship of diabetes mellitus with the aquaporin 9 protein in umbilical cord and fetal membranes

description: Aim
Aquaporins (AQPs) have important tasks in the fetal development process. Gestational Diabetes Mellitus (GDM) and Pregestational Diabetes Mellitus (PGDM) have been associated with significant maternal and fetal complications. Aquaporin-9 (AQP-9) plays an important role in the development of these complications. We aimed to investigate the relationship between AQP-9 and diabetes in the umbilical cord (UC) and fetal membranes of infants born to mothers with diabetes mellitus (DM).
Methods
Hematoxylin-Eosin staining was used for histomorphologic evaluation of UC and fetal membranes; anti-AQP-9 antibody was used for immunohistochemistry. Quantitative Real-Time PCR (qPCR) methods were used to quantitatively evaluate AQP-9 gene expression in tissues. The One-way Variance Analysis was used to compare the AQP-9 values by study groups.
Results
Histomorphologically, although there was an increase in the umbilical cord (UC) due to edema in the GDM group, there were no other histopathological changes in the PGDM group except for a decrease in cord diameter. In disease groups (GDM and PGDM), there were no abnormalities in the amnion and chorionic membrane structure. Immunohistochemical evaluation with anti-AQP-9 antibody revealed statistically significant differences between the groups in both UC and fetal membranes. In quantitative evaluation, the AQP-9 value in the UC Control group was higher than in the GDM and PGDM groups (p=0.026). There were no significant differences in fetal membranes (p=0.980).
Conclusion 
AQP-9 levels are significantly affected by GDM and PGDM in UC and fetal membranes. The relationship between UC, fetal membranes, AQP-9, and GDM is complex and needs to be supported by further studies.
DOI: 10.6084/m9.figshare.4213338.v1
title: Carbonate system.csv

description: Discrete water sampling data collected from Santa Barbara Harbor (-119.6854, 34.41) from August 1, 2012-March 14,2014.<br>Data include measured pH, salinity, temperature, dissolved inorganic carbon, total alkalinity and estimates of total alkalinity based on sea surface temperature and salinity. <br>Discrete seawater samples were collected by hand or using a Niskin bottle. In the laboratory, samples were analyzed for pH (total scale), total alkalinity and/or total CO2 (sum of carbon dioxide, bicarbonate and carbonate). Two parameters were used to calculate the full suite of carbonate chemistry parameters using the CO2calc algorithms. Program outputs are included for laboratory conditions as input, and adjusted for situ temperature.<br><br>
DOI: 10.6084/m9.figshare.25119275.v2
title: CONTEXT - Data, Code, Objects

description: Data, code and objects associated with the paper - "Genetic dependencies associated with transcription factor activities in human cancer cell lines"The CropSeq_TEAD1_GDs.RDS file contains the Seurat object of the CROP-seq data in the SNU-761 cell line. The assignment of sgRNA for each cell line can be found in the assay "guide_calls". Raw and normalized single-cell counts are available.
DOI: 10.6084/m9.figshare.7373906.v1
title: GFB1 Science Response to eLetters Figure&Rscript

description: Estimated BPR curve (with 95% confidence interval bands), using an ordinary least squares (OLS) model, based on the three grassland biomes (i.e. Montane Grasslands and Shrublands, Flooded Grasslands and Savannas, and Temperate Grasslands, Savannas and Shrublands). We converted species richness (S) to relative species richness (S_hat): S_hat = S *100 / 271.<br>R script for generating this graph is attached.
DOI: 10.6084/m9.figshare.14853942.v1
title: Raw code in R

description: Raw code in R
DOI: 10.6084/m9.figshare.28732673.v1
title: RAW DATA_Barriers to Caregiver Adherence to Home Exercise Program for Children with Cerebral Palsy in Osun State, Nigeria.xlsx

description: There is evidence that psychosocial barriers are linked to poor caregiver adherence to Home Exercise Programs (HEPs) for children with Cerebral Palsy (CP). failure of caregivers to administer home programs as recommended by therapists often leads to suboptimal rehabilitation outcomes and complications. The key objectives of this study were to assess caregiver burden, psychological distress, CP severity, and social support and determine their relationship with adherence.
DOI: 10.6084/m9.figshare.24416602.v1
title: Global distribution of surface soil organic carbon in urban greenspaces

description: We compiled a global database of SOC concentration and density in urban greenspaces (SOC-U) (updated to June, 2023) based on literature survey via Web of Science (http://isiknowledge.com), Google Scholar (https://scholar.google.com) and the China National Knowledge Infrastructure (http://www.cnki.net). The keywords ‘soil organic carbon’/ ‘SOC’ and ‘urban greenspaces’/ ‘urban parks’/ ‘urban forests’ / ‘urban lawns’ were used for literature search. Overall, the SOC-U database includes 420 and 155 observations of SOC concentration and density from 246 independent publications, across 257 cities in 52 countries. Please find more information in the paper by Guo et al.
DOI: 10.6084/m9.figshare.24995487.v1
title: Additional file 1 of Dental health and lung cancer risk in the Golestan Cohort Study

description: Supplementary Material 1: Supplementary tables
DOI: 10.6084/m9.figshare.26341213.v2
title: Disentangling Electronic and Phononic Thermal Transport Across 2D Interfaces

description: Electrical and thermal transport across material interfaces is key for 2D electronics in semiconductor technology, yet their relationship remains largely unknown. We report a theoretical proposal to separate electronic and phononic contributions to thermal conductance at 2D interfaces, which is validated by non-equilibrium Green's function calculations and molecular dynamics simulations for graphene-gold contacts. Our results reveal that while metal-graphene interfaces are transparent for both electrons and phonons, non-covalent graphene interfaces block electronic tunneling beyond two layers but not phonon transport. This suggests that the Wiedemann-Franz law can be experimentally tested by measuring transport across interfaces with varying graphene layers.
DOI: 10.6084/m9.figshare.3521105.v1
title: Appendix A. Supplementary information on the study sites and Google EarthTM images.

description: Supplementary information on the study sites and Google EarthTM images.
DOI: 10.6084/m9.figshare.5945764.v1
title: Additional file 1: of Expansion of a urethritis-associated Neisseria meningitidis clade in the United States with concurrent acquisition of N. gonorrhoeae alleles

description: List of 353 isolates included in analyses of the U.S. NmNG urethritis clade, including sequence accession information, and provenance, serogroup, molecular typing, and impact of recombination events where available. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.24071283.v1
title: Supplementary Material for: Massive Intoxication with 70 Tablets of Apixaban; A Case Report

description: Apixaban is a direct oral anticoagulation agent that exerts its effect through the direct inhibition of factor Xa. We treated a case of massive intoxication with 70 tablets of apixaban and have presented the clinical course of the associated anti-Xa activities. A 49-year-old woman was admitted to the emergency department approximately 1.5 h after impulsive self - intoxication with 175mg of apixaban. She developed coagulopathy with PT-INR of 3.65, APTT of 56.5 s and AT of &gt;150% (at 1.5 h post-ingestion). The patient’s initial and peak anti-Xa activity was 17.7 IU/mL and its elimination displayed first-order kinetics with a half-life of 10.5 h. The patient’s anti-Xa activity was within the therapeutic dose range at 26 h post-ingestion, and she recovered without experiencing any bleeding complications. Her coagulopathy also returned normal level at the same timing. This result suggests that PT-INR and AT can be used as substitute markers of overwhelmed anticoagulation following massive overdose of apixaban. A case of apixaban overdose with associated anti-Xa activities was presented. There was favorable resolution of anticoagulation without specific treatments.
DOI: 10.6084/m9.figshare.20210537.v1
title: Supplementary Material for: KARYOTYPING OF LYMPHOCYTES AND EPITHELIAL CELLS OF DISTINCT EMBRYONIC ORIGIN DOESN’T HELP TO PREDICT THE TURNER SYNDROME FEATURES

description: Background: In Turner syndrome (TS), fluorescent in situ hybridization (FISH) karyotyping offers an alternative to classical karyotyping. Objective: We tested the added value of FISH karyotyping from lymphocytes (mesodermal origin), buccal cells (ectodermal origin) and a rear-tongue smear (endodermal origin) to determine the 45,X cell line fraction and its impact on patient phenotype. Design and Patients: Classical karyotyping and three FISH assays were done in 153 girls and women previously diagnosed with TS in four university hospitals. The 45,X cell line fraction was determined for each method and correlated with the major phenotypic signs. Results: Classical karyotyping identified 45,X/46,XX mosaicism in 77/153 subjects (50%), 45,X monosomy in 52/153 (34%), and other karyotypes in 24/153 (16%). FISH from lymphocytes verified 45,X in 47/52 original cases, whereas 4/52 had 45,X/46,XX and 1/52 45,X/47,XYY mosaicism. The 45,X cell line fraction was higher in FISH from lymphocytes compared to classical karyotyping (median 86.4% versus 70.0%; p&lt;0.001), while there was no difference for FISH from buccal or rear-tongue smear cells. The mean 45,X cell line fraction was more abundant in patients with several of the characteristic phenotypic signs compared to patients without them (p&lt;0.01), but the predictive power was insufficient. Conclusion: FISH analysis confirmed the findings of classical karyotyping; only a few 45,X monosomy cases were reclassified as mosaics. The 45,X cell line fraction did not show clinically meaningful prediction of the phenotype. FISH analysis of buccal or rear-tongue epithelial cells may be a non-inferior, less invasive alternative to classical karyotyping.
DOI: 10.6084/m9.figshare.24925722.v1
title: DATASET_Role of different crop and non-crop habitats on cassava whitefly colonisation on cassava fields in Malawi.xlsx

description: Whitefly colonisation source on cassava at the beginning of the growing season was investigated by placing clean sentinel cassava in different alternative host plant habitats in Lilongwe and Nkhatabay in Malawi in 2017. The sentinel plants were removed from the field and taken to the laboratory after four weeks for assessing whitefly colonisation. The data comprises counts of whitefly adults and nymphs and parasitised nymphs on sentinel cassava as well as on alternative host plants in the habitats.
DOI: 10.6084/m9.figshare.16744504.v2
title: bS21_encoding_phages

description: Lin-Xing Chen, Alexander L. Jaffe, Adair L. Borges, Petar I. Penev, Tara Colenbrander Nelson, Lesley A. Warren, Jillian F. Banfield. 2021. <b>Phage-encoded ribosomal protein S21 expression is linked to late stage phage replication.</b><br>The bS21-encoding phage genomes reconstructed from freshwater samples using metagenomes.<br>Note that all the genomes have been manually curated to fix any assembly errors and/or gaps using mapped reads. In case one error or a gap can't not be fixed, 10 Ns will be shown at the exact place.
DOI: 10.6084/m9.figshare.703118.v3
title: Talks on Learning methods in Bioinformatics (Education and Training)

description: The slides displayend in recent talks are shared here
DOI: 10.17632/wx9kbx6kmn.1
title: Physics-informed Partitioned Coupled Neural Operator for Complex Networks Datasets

description: URL of the paper code：https://github.com/wdwu/PCNO
DOI: 10.6084/m9.figshare.19070264.v1
title: Fig 1B.xlsx

description: Data associated with publication: Dengue and Zika Virus Capsid Proteins Contain a Common PEX19-Binding Motif
DOI: 10.6084/m9.figshare.21256116.v1
title: Exploring the impact of a mindfulness meditation class on college student stress levels and quality of life.

description: HSIRB approved research on the effects of mindfulness meditation training in a college classroom setting. Paired sample t tests used to analyze data.
DOI: 10.6084/m9.figshare.22087643.v1
title: Tabla 1. Análisis de I-Docs según temática, función del usuario, modo y tipo de interacción

description: <strong>Análisis comparativo de documentales interactivos, </strong> <strong>según temática, función del usuario, modo y tipo de interac<br> ción. Se realizó a partir del visionado de aquellos I-Docs premiados por la NFB -National Film Board of Canada-, IDFA DocLab –International Documentary Filmfestival Amsterdam, MIT -Open Documentary Lab, Media lab and Comparative Media Studies/Writing-, UWE -University of the West of England-. Con el objetivo de clasificar los I-Docs según el modo, grado y tipo de interactividad de acuerdo al género del documental y en relación con la función del usuario se tuvo en cuenta las categorizaciones de Aarseth y las taxonomías de Gaudenzi y Gifreu.</strong>
DOI: 10.6084/m9.figshare.23703405.v1
title: Vibrio jascida Genomes for a Pangenomics Exercise (contigs-db files) Vibrio jascida Genomes for a Pangenomics ExerciseVibrio jascida Genomes for a Pangenomics Exercise

description: This is a collection of a few anvi'o contigs-db files for 7 novel V. jascida genomes isolated by the participants of the 2018 Microbial Diversity Course at the Marine Biological Laboratory (Peggy Lai, Danielle Campbell, Brittni Bertolet, Sarah Schwenck, and Monica E. McCallum), and a reference genome from the NCBI.
<br>
The 7 genomes are available as a courtesy of the course, but please get in touch with Rachel Whitaker (https://mcb.illinois.edu/faculty/profile/rwhitakr) if you wish to use them for anything.
<br>
Please see this page for more information:
<br>
https://merenlab.org/tutorials/vibrio-jasicida-pangenome/
DOI: 10.6084/m9.figshare.24022515.v1
title: <b>Ecological and evolutionary factors contribute to the uneven diversification of firs in the Northern Hemisphere</b>

description: This includes alignment and partition files and full set of occurrence data of Abies at global scale.
DOI: 10.6084/m9.figshare.19328630.v1
title: RNA-Seq.xlsx

description: RNA-Seq in ROCK2-null podocytes<br>
DOI: 10.6084/m9.figshare.7358303.v1
title: Lifeform.xlsx

description: <pre>The lifeform database constructed and used in the manuscript (these data are similar to Table S1)</pre>
DOI: 10.6084/m9.figshare.19461188.v1
title: Supplementary Material for: The Efficacy and Safety of Botulinum Toxin Type A Injections in Improving Facial Scars: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Botulinum toxin type A (BTA) has a wide range of clinical applications, and its use in improving aesthetics is one of them. The aim of this study was to better assess the efficacy and safety of BTA in patients with facial scars. <b><i>Summary:</i></b> We extracted the data of the visual analog scale (VAS) score, Vancouver scar scale (VSS) score, scar width, observer scar assessment scale (OSAS), patient scar assessment scale (PSAS), and/or drug-related adverse events. Five studies provided the data of VAS score, and the results showed that the VAS score in the BTA group was significantly higher than that in the control group. Three randomized controlled trials (RCTs) reported the VSS score. A statistically significant difference exists between the BTA group and the control group. Three RCTs reported the scar width after BTA treatment. A more favorable change was found in the BTA group with scar width even without statistical significance. Data about the OSAS and PSAS scores were available in two trials. There was no significant difference in OSAS and PSAS scores between the BTA group and the control group. Only three studies recorded three slight adverse events. There were no reports of severe complications. In conclusions, this study demonstrated that BTA has the potential to improve facial scars with an acceptable safety profile.
DOI: 10.6084/m9.figshare.23659617.v1
title: Duplicate Tasks Miner Datasets

description: This datasets include Petri net models with duplicate tasks and it's related event logs.
DOI: 10.6084/m9.figshare.28560584.v1
title: Data on AI acceptance and use among pre-service EFL teachers

description: The data includes item and samples of the responses
DOI: 10.6084/m9.figshare.3117364.v1
title: An Ameliorated Improvement Factor Model for Imperfect Maintenance and Its Goodness of Fit

description: Maintenance actions can be classified, according to their efficiency, into three categories: perfect maintenance, imperfect maintenance, and minimal maintenance. To date, the literature on imperfect maintenance is voluminous, and many models have been developed to treat imperfect maintenance. Yet, there are two important problems in the community of maintenance that still remain wide open: how to give practical grounds for an imperfect-maintenance model, and how to test the fit of a real dataset to an imperfect-maintenance model. Motivated by these two pending problems, this work develops an imperfect-maintenance model by taking a physically meaningful approach. For the practical implementation of the developed model, we advance two methods, called QMI method and spacing-likelihood algorithm, to estimate involved unknown parameters. The two methods complete each other and are widely applicable. To offer a practical guide for testing fit to an imperfect-maintenance model, this work promotes a bootstrapping approach to approximating the distribution of a test statistic. The attractions and dilemmas of QMI method and spacing-likelihood algorithm are revealed via simulated data. The utility of the developed imperfect-maintenance model is evidenced via a real dataset. This article has a supplementary material online.
DOI: 10.6084/m9.figshare.17075660.v6
title: Global heat wave records from 1971 to 2100

description: A long-term global heat wave record dataset was constructed using three historical hourly climate data of CRU-JRA, ERA5 and GLDAS and future daily climate data of GFDL-ESM4 under three SSPS (Shared Socioeconomic Pathways). These datasets are based on constant thresholds over 35 °C, percentile thresholds over 90%, and duration thresholds over 3 days. The Python file is the source code for the Global Heat Wave Toolbox, which can be used to generate heat wave records based on custom thresholds.
DOI: 10.17632/m2bs6zzbsj.1
title: Data for: Analysis of polyamide chemical stability in mining site conditions via capillary electrophoresis and NMR spectroscopy

description: This data (processed data for solution-state NMR spectroscopy, solid-state NMR spectroscopy, and FTIR spectroscopy; raw data for capillary electrophoresis) was used to generate the manuscript titled: Analysis of polyamide chemical stability in mining site conditions via capillary electrophoresis and NMR spectroscopy. This dataset contains the data for all the NMR and FTIR spectra, as well as CE distributions of electrophoretic mobilities, shown in this manuscript and its supplementary material.