cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5729202
title: Genome-wide analysis of AP2/ERF transcription factors in zoysiagrass, <i>Zoysia japonica</i>

description: The AP2/ERF (AP2, APETALA2; ERF, ethylene responsive factor) transcription factors regulate various important processes in plants, including growth, development, metabolism and stress responses. In the zoysiagrass genome (<i>Zoysia japonica</i>), 147 AP2/ERF genes were identified, which were classified into three families based on phylogenetic analysis. By analysis of RNA-sequencing data, the expression profiles of 46 members were assessed, and their regulation patterns in response to cold stress were investigated. Meanwhile, a zoysiagrass genetic regulation network (GRN) was reconstructed based on rice interaction data using the homology search method. Two GRN modules containing AP2/ERF transcription factors were characterized as having important functions in exocytosis and sucrose metabolism processes, which suggested that AP2/ERF transcription factors play critical roles in these biological processes, exerting control over plant growth and stress responses. These results provide useful information for future functional analyses of the AP2/ERF family in zoysiagrass.
DOI: 10.6084/m9.figshare.5729202.v1
title: Genome-wide analysis of AP2/ERF transcription factors in zoysiagrass, <i>Zoysia japonica</i>

description: The AP2/ERF (AP2, APETALA2; ERF, ethylene responsive factor) transcription factors regulate various important processes in plants, including growth, development, metabolism and stress responses. In the zoysiagrass genome (<i>Zoysia japonica</i>), 147 AP2/ERF genes were identified, which were classified into three families based on phylogenetic analysis. By analysis of RNA-sequencing data, the expression profiles of 46 members were assessed, and their regulation patterns in response to cold stress were investigated. Meanwhile, a zoysiagrass genetic regulation network (GRN) was reconstructed based on rice interaction data using the homology search method. Two GRN modules containing AP2/ERF transcription factors were characterized as having important functions in exocytosis and sucrose metabolism processes, which suggested that AP2/ERF transcription factors play critical roles in these biological processes, exerting control over plant growth and stress responses. These results provide useful information for future functional analyses of the AP2/ERF family in zoysiagrass.
DOI: 10.6084/m9.figshare.5731713
title: Additional file 1: Table S1. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora ‘Hang Baishao’

description: Observations on sprouting and growth of ‘Hangbaishao’ after transferred into glasshouse under natural chilling treatments in 2012–2013. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5731713.v1
title: Additional file 1: Table S1. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora ‘Hang Baishao’

description: Observations on sprouting and growth of ‘Hangbaishao’ after transferred into glasshouse under natural chilling treatments in 2012–2013. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5731731
title: Additional file 2: Table S2. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora ‘Hang Baishao’

description: Observations on flowering performance of ‘Hangbaishao’ after transferred into glasshouse under natural chilling treatments in 2012–2013. (XLSX 270 kb)
DOI: 10.6084/m9.figshare.5731731.v1
title: Additional file 2: Table S2. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora ‘Hang Baishao’

description: Observations on flowering performance of ‘Hangbaishao’ after transferred into glasshouse under natural chilling treatments in 2012–2013. (XLSX 270 kb)
DOI: 10.6084/m9.figshare.5731746
title: Additional file 3: Table S3. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora â Hang Baishaoâ

description: The daily temperatures recorded in each hour from November 23, 2012 to March 12, 2013. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.5731746.v1
title: Additional file 3: Table S3. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora â Hang Baishaoâ

description: The daily temperatures recorded in each hour from November 23, 2012 to March 12, 2013. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.5731758
title: Additional file 4: Table S4. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora ‘Hang Baishao’

description: Observations on sprouting and growth of ‘Hangbaishao’ after transferred into glasshouse under artificial chilling in 2013–2014. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5731758.v1
title: Additional file 4: Table S4. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora ‘Hang Baishao’

description: Observations on sprouting and growth of ‘Hangbaishao’ after transferred into glasshouse under artificial chilling in 2013–2014. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5731779
title: Additional file 5: Table S5. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora ‘Hang Baishao’

description: Observations on flowering performance of ‘Hangbaishao’ after transferred into glasshouse under artificial chilling treatments in 2013–2014. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5731779.v1
title: Additional file 5: Table S5. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora ‘Hang Baishao’

description: Observations on flowering performance of ‘Hangbaishao’ after transferred into glasshouse under artificial chilling treatments in 2013–2014. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5731782
title: Additional file 2:Â Dataset S1. of A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells

description: Informaiton of filted loci from adipocyte to macrophage and from macrophage to adipocyte. (XLS 3896 kb)
DOI: 10.6084/m9.figshare.5731782.v1
title: Additional file 2:Â Dataset S1. of A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells

description: Informaiton of filted loci from adipocyte to macrophage and from macrophage to adipocyte. (XLS 3896 kb)
DOI: 10.6084/m9.figshare.5731794
title: Additional file 6: Table S6. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora â Hang Baishaoâ

description: Details of the temperature- or phoroperiod-associated unigenes with differential expression acquired from transcriptomic sequencing. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.5731794.v1
title: Additional file 6: Table S6. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora â Hang Baishaoâ

description: Details of the temperature- or phoroperiod-associated unigenes with differential expression acquired from transcriptomic sequencing. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.5731800
title: Additional file 3: Dataset S2. of A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells

description: Details of mRNA transfer analysis from macrophage to adipocyte. (XLSX 1903 kb)
DOI: 10.6084/m9.figshare.5731800.v1
title: Additional file 3: Dataset S2. of A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells

description: Details of mRNA transfer analysis from macrophage to adipocyte. (XLSX 1903 kb)
DOI: 10.6084/m9.figshare.5731809
title: Additional file 7: Table S7. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora â Hang Baishaoâ

description: Details of the temperature- or phoroperiod-associated unigenes without differential expression from transcriptomic sequencing. (XLSX 443 kb)
DOI: 10.6084/m9.figshare.5731809.v1
title: Additional file 7: Table S7. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora â Hang Baishaoâ

description: Details of the temperature- or phoroperiod-associated unigenes without differential expression from transcriptomic sequencing. (XLSX 443 kb)
DOI: 10.6084/m9.figshare.5731815
title: Additional file 4:Â Dataset S3. of A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells

description: Details of mRNA transfer analysis from adipocyte to macrophage. (XLSX 6308 kb)
DOI: 10.6084/m9.figshare.5731815.v1
title: Additional file 4:Â Dataset S3. of A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells

description: Details of mRNA transfer analysis from adipocyte to macrophage. (XLSX 6308 kb)
DOI: 10.6084/m9.figshare.5731821
title: Additional file 8: Table S8. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora â Hang Baishaoâ

description: The daily temperatures recorded in each hour from November 21, 2015 to March 15, 2016. (XLSX 149 kb)
DOI: 10.6084/m9.figshare.5731821.v1
title: Additional file 8: Table S8. of Mining and expression analysis of candidate genes involved in regulating the chilling requirement fulfillment of Paeonia lactiflora â Hang Baishaoâ

description: The daily temperatures recorded in each hour from November 21, 2015 to March 15, 2016. (XLSX 149 kb)
DOI: 10.6084/m9.figshare.5731830
title: Additional file 5: Dataset S4. of A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells

description: Differential genes between adipocyte cultured alone and co-cultured with macrophage and between macrophage alone and co-cultured with adipocyte. (XLSX 96 kb)
DOI: 10.6084/m9.figshare.5731830.v1
title: Additional file 5: Dataset S4. of A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells

description: Differential genes between adipocyte cultured alone and co-cultured with macrophage and between macrophage alone and co-cultured with adipocyte. (XLSX 96 kb)
DOI: 10.6084/m9.figshare.5732061
title: Additional file 2: of Genetic variation in human drug-related genes

description: All supplemental tables cited in the text. Enclosed data include data set meta-information, CAP scores for all drug-related genes, DRP scores for all drugs, CAP and DRP differences between populations, and a comparison between allele frequencies in the studied data set and CPIC guidelines. (XLSX 776 kb)
DOI: 10.6084/m9.figshare.5732061.v1
title: Additional file 2: of Genetic variation in human drug-related genes

description: All supplemental tables cited in the text. Enclosed data include data set meta-information, CAP scores for all drug-related genes, DRP scores for all drugs, CAP and DRP differences between populations, and a comparison between allele frequencies in the studied data set and CPIC guidelines. (XLSX 776 kb)
DOI: 10.6084/m9.figshare.5734287
title: SUPPORT EFFECT ON THE STRUCTURE AND PROPERTIES OF MANGANESE OXIDE ELECTRODE MATERIALS

description: The composite electrode material of manganese oxide supported on poly glucose (PGS) was prepared by using KMnO4 as manganese source. In order to study the influence of the support on the structure and properties of the composite electrode materials, the changes of the composition of the composite electrode materials were investigated in different weight ratio of KMnO4/PGS (3:1, 3:3, 3:5, 3:7, 3:9). The characterization results of XRD, Raman special and XPS indicated the composition of manganese oxides was greatly influenced by the content of PGS. When the PGS content is lower, the composition of manganese oxide in hybrid material is single-component oxide (MnOOH or Mn3O4). With the increasing PGS content, a mixture of Mn3O4 and MnCO3 was observed, furthermore proportion of MnCO3 in mixture also increased, and up to higher PGS content (KMnO4/PGS=3:9), single-component MnCO3 was founded on hybrid material. In addition, the change of composition of hybrid materials also led to an obvious difference in electrochemical performance. With the increase of PGS content, the specific capacitance of hybrid materials increases firstly, and reaches the maximum with the weight ratio of KMnO4/PGS equal to 3:3, and then gradually decreases. This was attributed to the higher electrochemical performance of Mn3O4 than that of MnOOH and MnCO3.
DOI: 10.6084/m9.figshare.5734287.v1
title: SUPPORT EFFECT ON THE STRUCTURE AND PROPERTIES OF MANGANESE OXIDE ELECTRODE MATERIALS

description: The composite electrode material of manganese oxide supported on poly glucose (PGS) was prepared by using KMnO4 as manganese source. In order to study the influence of the support on the structure and properties of the composite electrode materials, the changes of the composition of the composite electrode materials were investigated in different weight ratio of KMnO4/PGS (3:1, 3:3, 3:5, 3:7, 3:9). The characterization results of XRD, Raman special and XPS indicated the composition of manganese oxides was greatly influenced by the content of PGS. When the PGS content is lower, the composition of manganese oxide in hybrid material is single-component oxide (MnOOH or Mn3O4). With the increasing PGS content, a mixture of Mn3O4 and MnCO3 was observed, furthermore proportion of MnCO3 in mixture also increased, and up to higher PGS content (KMnO4/PGS=3:9), single-component MnCO3 was founded on hybrid material. In addition, the change of composition of hybrid materials also led to an obvious difference in electrochemical performance. With the increase of PGS content, the specific capacitance of hybrid materials increases firstly, and reaches the maximum with the weight ratio of KMnO4/PGS equal to 3:3, and then gradually decreases. This was attributed to the higher electrochemical performance of Mn3O4 than that of MnOOH and MnCO3.
DOI: 10.6084/m9.figshare.5734782
title: Structures and bonding of C<sub>2</sub>X<sub>2</sub>Y<i><sup>q</sup></i>(X=Si,Ge,Sn,Pb; Y=C,Si,Ge,Sn,Pb; <i>q</i> = +1,0,−1): π-type templates for planar tetracoordinate heavier group 14 atoms

description: Contrasting the big family of the planar tetracoordinate carbon (ptC), species featuring the planar tetracoordinate heavier group element M (ptM) have been largely limited. Effective structural frameworks to accommodate such ptM centres are thus highly desired. In the present article, we report an extensive computational study on 60 pentatomic systems C<sub>2</sub>X<sub>2</sub>Y<i><sup>q</sup></i> (X=Si,Ge,Sn,Pb; Y=C,Si,Ge,Sn,Pb; <i>q</i> = +1,0,−1) covering both the low and high spin states. Up to 34 systems were shown to have the very low-lying singlet planar tetracoordinate heavier group 14 (ptM with M=Si,Ge,Sn,Pb) structures bearing the 19 (<i>q</i> = +1), 20 (<i>q</i> = 0) and 21 (<i>q</i> = −1) valence electrons (ve). Structural and bonding analysis confirmed the effectiveness of the inherent π-type ligand skeleton XCCX or XCCY that each have several sets of π-bonding orbitals to stabilise the ptM centre. The structural and bonding motifs of these ptMs differ greatly from the classic ptMs, which have the σ-type ligand skeleton, smaller number of valence electrons (≤18ve), and the centre → ligand π-delocalisation.
DOI: 10.6084/m9.figshare.5734782.v1
title: Structures and bonding of C<sub>2</sub>X<sub>2</sub>Y<i><sup>q</sup></i>(X=Si,Ge,Sn,Pb; Y=C,Si,Ge,Sn,Pb; <i>q</i> = +1,0,−1): π-type templates for planar tetracoordinate heavier group 14 atoms

description: Contrasting the big family of the planar tetracoordinate carbon (ptC), species featuring the planar tetracoordinate heavier group element M (ptM) have been largely limited. Effective structural frameworks to accommodate such ptM centres are thus highly desired. In the present article, we report an extensive computational study on 60 pentatomic systems C<sub>2</sub>X<sub>2</sub>Y<i><sup>q</sup></i> (X=Si,Ge,Sn,Pb; Y=C,Si,Ge,Sn,Pb; <i>q</i> = +1,0,−1) covering both the low and high spin states. Up to 34 systems were shown to have the very low-lying singlet planar tetracoordinate heavier group 14 (ptM with M=Si,Ge,Sn,Pb) structures bearing the 19 (<i>q</i> = +1), 20 (<i>q</i> = 0) and 21 (<i>q</i> = −1) valence electrons (ve). Structural and bonding analysis confirmed the effectiveness of the inherent π-type ligand skeleton XCCX or XCCY that each have several sets of π-bonding orbitals to stabilise the ptM centre. The structural and bonding motifs of these ptMs differ greatly from the classic ptMs, which have the σ-type ligand skeleton, smaller number of valence electrons (≤18ve), and the centre → ligand π-delocalisation.
DOI: 10.5281/zenodo.10867251
title: Multiverse Notebook: Shifting Data Scientists to Time Travelers (Supplemental Material)

description: The collected revisions and the results of our manual inspectionspresented in "Multiverse Notebook: Shifting  Data Scientist to Time Traveler."
DOI: 10.5281/zenodo.7656048
title: Multiverse Notebook: Shifting Data Scientists to Time Travelers (Supplemental Material)

description: The collected revisions and the results of our manual inspectionspresented in "Multiverse Notebook: Shifting  Data Scientist to Time Traveler."
DOI: 10.5281/zenodo.7656049
title: Multiverse Notebook: Shifting Data Scientists to Time Travelers (Supplemental Material)

description: The collected revisions and the results of our manual inspectionspresented in "Multiverse Notebook: Shifting  Data Scientist to Time Traveler."
DOI: 10.6084/m9.figshare.5739201
title: Additional file 1: of Memory retrieval in addiction: a role for miR-105-mediated regulation of D1 receptors in mPFC neurons projecting to the basolateral amygdala

description: Influence of Chronic morphine on microRNA expression. (XLS 1725 kb)
DOI: 10.6084/m9.figshare.5739201.v1
title: Additional file 1: of Memory retrieval in addiction: a role for miR-105-mediated regulation of D1 receptors in mPFC neurons projecting to the basolateral amygdala

description: Influence of Chronic morphine on microRNA expression. (XLS 1725 kb)
DOI: 10.6084/m9.figshare.5739219
title: Additional file 1: Table S1. of The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera

description: The list of OXPHOS gene Symbols and the corresponding OrthoDB Gene ID. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5739219.v1
title: Additional file 1: Table S1. of The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera

description: The list of OXPHOS gene Symbols and the corresponding OrthoDB Gene ID. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5739228
title: Additional file 2: Table S2. of The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera

description: Genes that are missing in transcriptome data set. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5739228.v1
title: Additional file 2: Table S2. of The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera

description: Genes that are missing in transcriptome data set. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5739258
title: Additional file 4: Table S3. of The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera

description: dN/dS ratio estimates from PAML branch model. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5739258.v1
title: Additional file 4: Table S3. of The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera

description: dN/dS ratio estimates from PAML branch model. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5739273
title: Additional file 5: Table S4. of The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera

description: Codon sites that were detected under positive selection in OXPHOS genes based on the PAML branch-site model, MEME and TreeSAAP. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5739273.v1
title: Additional file 5: Table S4. of The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera

description: Codon sites that were detected under positive selection in OXPHOS genes based on the PAML branch-site model, MEME and TreeSAAP. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5739285
title: Additional file 1: Table S1. of The risk of nontuberculous mycobacterial infection in patients with Sjögren’s syndrome: a nationwide, population-based cohort study

description: Unadjusted and adjusted hazard ratios for the association between variable and the risk of NTM infection after the diagnosis. (XLSX 9945 kb)
DOI: 10.6084/m9.figshare.5739285.v1
title: Additional file 1: Table S1. of The risk of nontuberculous mycobacterial infection in patients with Sjögren’s syndrome: a nationwide, population-based cohort study

description: Unadjusted and adjusted hazard ratios for the association between variable and the risk of NTM infection after the diagnosis. (XLSX 9945 kb)
DOI: 10.6084/m9.figshare.5739318
title: Additional file 3: Table S1. of Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93â 11 and development of functional marker for Bph9

description: Rice germplasm resources genotyped with Bph9-specific dominant marker. Labeled asterisk indicated cultivars haboring Bph9. (XLSX 16142Â kb)
DOI: 10.6084/m9.figshare.5739318.v1
title: Additional file 3: Table S1. of Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93â 11 and development of functional marker for Bph9

description: Rice germplasm resources genotyped with Bph9-specific dominant marker. Labeled asterisk indicated cultivars haboring Bph9. (XLSX 16142Â kb)
DOI: 10.6084/m9.figshare.5739342
title: Additional file 2: of Pulmonary edema following central nervous system lesions induced by a non- mouse-adapted EV71 strain in neonatal BALB/c mice

description: Sequence of the fragment of VP1 genome in ZZ1350 strain. (TXT 232 bytes)
DOI: 10.6084/m9.figshare.5739342.v1
title: Additional file 2: of Pulmonary edema following central nervous system lesions induced by a non- mouse-adapted EV71 strain in neonatal BALB/c mice

description: Sequence of the fragment of VP1 genome in ZZ1350 strain. (TXT 232 bytes)
DOI: 10.6084/m9.figshare.5739594
title: training dataset and validation dataset of the manuscript "A Fully Convolutional Network for weed mapping of Unmanned Aerial Vehicle (UAV) Imagery"

description: The folder 'rice_data' containing the training dataset and validation dataset.<br>All the UAV imagery were in the folder: 'rice_data\image': DJI_0087_0.png DJI_0087_1.png ......All the Ground Truth images was in the folder: 'rice_data\image': DJI_0087_0.png DJI_0087_1.png ......The Ground Truth images correspond to the UAV imagery with a same name<br>The file names of the training dataset were recorded in the file 'rice_data\train.txt' using the form like: image/DJI_0114_2.png gt_image/DJI_0114_2.png ......Each line in the file 'rice_data\train.txt' represents one sample, where the names of UAV imagery and the Ground Truth image were separated by a blank.<br>The file names of the training dataset was recorded in the file 'rice_data\val.txt' like: image/DJI_0101_2.png gt_image/DJI_0101_2.png ......Each line in the file 'rice_data\val.txt' represents one sample, where the names of the UAV imagery and the Ground Truth image were separated by a blank.<br>