cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8109634
title: The ALFAM2 dataset on ammonia loss from field-applied manure

description: The ALFAM2 database has measurements of ammonia volatilization (emission) from field-applied liquid animal manure (slurry). The dataset consists of two files: one with plot- (<code>ALFAM2_plot.csv</code>) and one with measurement interval-level (<code>ALFAM2_interval.csv</code>) observations. For information on file headers (column names), see the <code>*-level_variables.csv</code> files. The two data files can be merged on two plot keys (identification codes): <code>pid</code> and <code>pmid</code>. See the README.md file in the GitHub repository at https://github.com/sashahafner/ALFAM2-data, the web page https://projects.au.dk/alfam/ (or alfam.dk), and the reference and related identifiers here on the Zenodo page for more details. The ALFAM2-data GitHub repository also has original submissions from data contributors along with scripts necessary for processing the data to create the dataset shown here. Each Zenodo version can be matched to the GitHub versions through the release tags (see the releases page for a list: https://github.com/sashahafner/ALFAM2-data/releases)
description: {"references": ["Hafner, S.D., Pacholski, A., Bittman, S., Burchill, W., Bussink, W., Chantigny, M., Carozzi, M., G\u00e9nermont, S., H\u00e4ni, C., Hansen, M.N., Huijsmans, J., Hunt, D., Kupper, T., Lanigan, G., Loubet, B., Misselbrook, T., Meisinger, J.J., Neftel, A., Nyord, T., Pedersen, S.V., Sintermann, J., Thompson, R.B., Vermeulen, B., Vestergaard, A.V., Voylokov, P., Williams, J.R., Sommer, S.G., 2018. The ALFAM2 database on ammonia emission from field-applied manure: Description and illustrative analysis. Agricultural and Forest Meteorology, Greenhouse gas and ammonia emissions from livestock production 258, 66\u201379. https://doi.org/10.1016/j.agrformet.2017.11.027"]}
DOI: 10.5281/zenodo.10890413
title: The ALFAM2 dataset on ammonia loss from field-applied manure

description: The ALFAM2 database has measurements of ammonia volatilization (emission) from field-applied liquid animal manure (slurry). The dataset consists of two files: one with plot- (ALFAM2_plot.csv) and one with measurement interval-level (ALFAM2_interval.csv) observations. For information on file headers (column names), see the *-level_variables.csv files. The two data files can be merged on two plot keys (identification codes): pid and pmid. See the README.md file in the GitHub repository at https://github.com/sashahafner/ALFAM2-data, the web page https://projects.au.dk/alfam/ (or alfam.dk), and the reference and related identifiers here on the Zenodo page for more details. The ALFAM2-data GitHub repository also has original submissions from data contributors along with scripts necessary for processing the data to create the dataset shown here. Each Zenodo version can be matched to the GitHub versions through the release tags (see the releases page for a list: https://github.com/sashahafner/ALFAM2-data/releases)
DOI: 10.5518/1313
title: Simulation data from the publication "Two cooperative lipid binding sites within the pleckstrin homology domain are necessary for AKT binding and stabilisation to the plasma membrane"

description: A repository of simulation data from the publication "Two cooperative lipid binding sites within the pleckstrin homology domain are necessary for AKT binding and stabilisation to the plasma membrane". Here we provide new molecular insight into the first step of AKT activation where AKT binds to the plasma membrane and its orientation is stabilised in a bilayer with lateral heterogeneity (Lo-Ld phase coexistence). We have applied coarse-grained and atomistic molecular simulations and molecular and cell biology approaches and demonstrate that AKT recruitment to the membrane occurs via a secondary binding site in the AKT Pleckstrin Homology domain that acts cooperatively with the known canonical binding site. We showed that disrupting either the canonical or secondary binding sites the membrane localisation and AKT activity is attenuated. Given the precision with which we have identified the protein-lipid interactions, the study offers new directions for AKT-targeted therapy and for testing small molecules to target these specific amino acid-PIP molecular bonds.

This dataset contains: 
- DATASET 1: coarse-grained MD simulation data for the binding of the WT AKT-PH to a model membrane 
- DATASET 2: coarse-grained MD simulation data for the binding of the mut1 AKT-PH to a model membrane 
- DATASET 3: coarse-grained MD simulation data for the binding of the mut2 AKT-PH to a model membrane 
- DATASET 4: coarse-grained MD simulation data for the binding of the mut3 AKT-PH to a model membrane 
- DATASET 5: coarse-grained MD simulation data for the binding of the WT AKT-PH to a model membrane without PIP lipids 
- DATASET 6: atomistic MD simulation data for the binding of the WT AKT-PH to a model membrane.
DOI: 10.15468/dl.se4hev
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"4554482","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024480-241024112534372/datasets/export for details.
DOI: 10.15468/dl.rpz57g
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Pakistan",
 "OccurrenceStatus is Present",
 "TaxonKey is Psittacula eupatria (Linnaeus, 1766)"
 ]
}

 The dataset includes 165 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024482-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9gk3fu
title: Occurrence Download

description: A dataset containing 4602 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arbutus unedo L.",
 "Year 1980-2024"
 ]
}

 The dataset includes 4602 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024483-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3knzpd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"4554484","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024484-241024112534372/datasets/export for details.
DOI: 10.15468/dl.r7n98d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"4554483","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024481-241024112534372/datasets/export for details.
DOI: 10.15468/dl.ns5pjq
title: Occurrence Download

description: A dataset containing 1928 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halerpestes sarmentosus (Adams) Kom."
 ]
}

 The dataset includes 1928 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024485-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84x2gx
title: Occurrence Download

description: A dataset containing 2086 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bactrocera tau (Walker, 1849)"
 ]
}

 The dataset includes 2086 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024486-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14018099
title: VTEC and Virtual Stations dataset of Elazig and Maras regions

description: Dataset Description:

 

01. VTEC Data

    - Data type: VTEC (Vertical Total Electron Content) calculations obtained with ionolab from GNSS stations of Tusaga-aktif [1,2]

    - Temporal coverage: ±1 month around earthquake mainshocks

    

    a) Elazig Earthquake Region

       - Mainshock date: 24.01.2020

       - GNSS stations: ADY1, ELAZ, ERGN, ERZ2, VIR2

       - Time range: 24.12.2019 00:00:00 - 24.02.2020 23:59:30

    

    b) Maras Earthquakes Region

       - Mainshocks date: 06.02.2023

       - GNSS stations: ADN2, ADY1, ANTE, ARST, EKZ1, FEEK, HAT2, KLS1, MAR1, ONIY, TUF1

       - Time range: 06.01.2023  00:00:00 - 06.03.2023 23:59:30

 

02. Filtered VTEC Data

    - Processed version of VTEC data

    - Filtering methodology detailed in manuscript*

 

03. Daily Anomaly Ratios

    - Derived from filtered VTEC data

    - Calculation methodology detailed in manuscript*

 

04. Station Location Data

    - Geographical coordinates of GNSS stations

    - Earthquake epicenter coordinates

    - Station-to-epicenter distance calculations

 

05. Station Distance Coefficients

    - Derived from station location data

    - Calculation methodology detailed in manuscript*

 

06. Virtual Station Data

    - Derived product from Daily Anomaly Ratios and Station distance coefficients

    - Generation methodology detailed in manuscript*

 

* manuscript : "Detection of Pre-Seismic TEC Anomalies Using Isolation Forest: Virtual Station Analysis for Elazig and Maras Earthquakes"

 

[1] TUSAGA-Aktif —. www.tusaga-aktif.gov.tr. [Accessed 15-06-2023]

[2] IONOLAB - Ionosphere Research Laboratory — ionolab.org. https://www.ionolab.org/. [Accessed 15-06-2023]
DOI: 10.15468/dl.bfbqjt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"4554486","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024487-241024112534372/datasets/export for details.
DOI: 10.15468/dl.3nrsc6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"4554487","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024488-241024112534372/datasets/export for details.
DOI: 10.15468/dl.w6sdmn
title: Occurrence Download

description: A dataset containing 1699992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Setophaga petechia (Linnaeus, 1766), Setophaga pinus (Linnaeus, 1766), Setophaga ruticilla (Linnaeus, 1758), Setophaga striata (J.R.Forster, 1772), Setophaga tigrina (J.F.Gmelin, 1789))",
 "Country is Canada",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON ((-84.76571 41.22334, -58.93394 41.22334, -58.93394 49.85477, -84.76571 49.85477, -84.76571 41.22334))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1699992 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024462-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14040975
title: FRACTESUS_UC_S275JR_T0_MCT_output

description: Fractesus project. Fracture test mini-CT. Master curve output S275JR. UC.
DOI: 10.5281/zenodo.14040976
title: FRACTESUS_UC_S275JR_T0_MCT_output

description: Fractesus project. Fracture test mini-CT. Master curve output S275JR. UC.
DOI: 10.15468/dl.375bqy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"4554488","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024490-241024112534372/datasets/export for details.
DOI: 10.15468/dl.4jmmvm
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "Geometry POLYGON((-1 46.9,-0.5 46.9,-0.5 47.14,-1 47.14,-1 46.9))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishedByGbifRegion is Europe and Central Asia",
 "TaxonKey is Fulica atra Linnaeus, 1758"
 ]
}

 The dataset includes 239 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024491-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yffruq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"4554489","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024492-241024112534372/datasets/export for details.
DOI: 10.15468/dl.kfuu8w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"4554490","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"lessThan","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"in","key":"YEAR","values":["2008","2009","2010","2011","2012","2013","2014","2015","2016","2017","2018","2019","2020","2021","2022","2023","2024"],"matchCase":false},{"type":"in","key":"BASIS_OF_RECORD","values":["LIVING_SPECIMEN","HUMAN OBSERVATION","OBSERVATION","OCCURRENCE","MACHINE_OBSERVATION"],"matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024493-241024112534372/datasets/export for details.
DOI: 10.5281/zenodo.14039038
title: NPC-Labeled SMILES datasets

description: NPC-Labels annotations for commonly used datasets. At this time, it includes all datasets from GNPS. More will be added in the future.
DOI: 10.5281/zenodo.14039039
title: NPC-Labeled SMILES datasets

description: NPC-Labels annotations for commonly used datasets. At this time, it includes solely `GNPS Cleaning + MatchMS`, but more are being labelled.
DOI: 10.5281/zenodo.14039239
title: NPC-Labeled SMILES datasets

description: NPC-Labels annotations for commonly used datasets. At this time, it includes `GNPS Cleaning + MatchMS` and `GNPS Cleaning`, but more are being labelled.
DOI: 10.5281/zenodo.14040990
title: NPC-Labeled SMILES datasets

description: NPC-Labels annotations for commonly used datasets. At this time, it includes all datasets from GNPS. More will be added in the future.
DOI: 10.6084/m9.figshare.26302237
title: The chronology and cooling history of type 7 chondrites: insights into the early impact events on chondritic parent body

description: Type 7 chondrites, which record a higher degree of heating process than typical type 3 to type 6 chondrites, are characterized with textures and petrography of partial melting. Understanding the timing and cooling history of incipient melting event for type 7 chondrites could provide insights into the complex thermal process of the early solar system. Here, we studied two chondrites NWA 12272 and NWA 11021. Both samples display partial melting characteristics of LL chondrites, including interconnected plagioclase/high-Ca pyroxene network, zoned plagioclase and lack of chondrules, which concurs with their classification of LL7 chondrites in the Meteoritical Bulletin Database. The 53Mn-53Cr isotopic data of NWA 12272, determined by mineral separates and bulk samples, yielded an isochron with a 53Mn/55Mn ratio of (1.40 ± 0.59) ×10-6 and a corresponding absolute age of 4558.8 ± 2.3 Ma (anchored to D’Orbigny angrite). Combined with the cooling rate estimated by the integration of REE-in-two-pyroxene thermometry and two-pyroxene thermometry, Mn-Cr isochron age of 4558.8 ± 2.3 Ma and Ca-phosphate Pb-Pb age of 4517 ± 6 Ma, we suggest that NWA 12272 experienced a two-stage cooling process after the incipient melting: it exposed to a relatively cold environment with a rapid cooling rate of ~30-100 °C/yr at 1150-1000 °C, and soon reburied with a slower cooling rate of ~13 °C/Ma at 1000-475 °C. Although the Mn-Cr isotopic study was not conducted for NWA 11021, the average Ca-phosphate Pb-Pb age of 4509 ± 7 Ma and high-temperature cooling rate (~1-30 °C/yr) of NWA 11021 are indistinguishable from or slightly lower than those of NWA 12272. Assuming NWA 11021 cooled from the same incipient melting event as NWA 12272, it could have recorded a similar two-stage cooling process. We suggest that the studied LL7 chondrites were most likely formed in the early solar system when additional impact heat overlapped on the “heated” type 5-6 chondrites. Integrated with the previous cooling rates of LL6-7 chondrites, the prevailing two-stage cooling rates of LL chondrites provide compelling evidence for the fragmentation-re-accretion process in the early history of LL chondrite parent body. This early impact event also happened in other ordinary chondrite groups and some iron meteorites.