cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5120911.v1
title: Supplementary Material for: Dynamic Expression and Heterogeneous Intracellular Location of En-1 during Late Mouse Embryonic Development

description: Engrailed-1 (En-1) is a transcription factor involved in the development of the midbrain/hindbrain during mouse early embryogenesis. Although En-1 is expressed from embryogenesis to adulthood, there has been no detailed description of its expression during late mouse embryonic development. Here we report the expression pattern of En-1 in the mouse embryo from E10.5 to the neonatal state. With immunohistochemistry we found that En-1 was expressed in the central nervous system (CNS) from E10.5 to the neonatal state, mostly restricted to the midbrain/hindbrain junction. Outside the CNS, En-1 is dynamically expressed in several neural crest-associated structures including the cranial mesenchyme, the mandibular arches, the vagus nerve, the dorsal root ganglia, the sympathetic ganglia, the somites, the heart and the cloaca. Additionally, we found that in the CNS, most of the En-1 was located in the nuclei, while outside the CNS, En-1 was mainly expressed in the cytoplasm. These findings provided additional evidence that En-1 may be involved in the development of neural crest cells.
DOI: 10.6084/m9.figshare.8119211.v1
title: Impact of planted hedgerow fallows on nutrient balances in a groundnut/maize/cassava intercrop

description: To assess if the nutrient supply through planted tree fallows meets crop nutrient uptake and export, N, P, K, Ca and Mg uptake and export by a groundnut/maize/cassava intercrop was compared with the nutrient uptake by three planted fallow systems (<i>Senna spectabilis, Flemingia macrophylla, Dactyladenia barteri</i>) and a no-tree control. Three cycles of two years fallow and one year cropping on Ultisol in southern Cameroon were studied. Fallows were slashed and burned. The fallow system had no consistent effect on nutrient uptake by individual crops. Crop nutrient uptake was most often highest in the <i>S. spectabilis</i> system. Nitrogen balances were generally negative due to N loss in the burn. Across three cropping cycles, the balance of fallow nutrient uptake versus total crop nutrient uptake was only in the <i>S. spectabilis</i> system positive for all nutrients. Nutrient export by all crops (mean of three years) was unaffected by fallow systems. The fallow nutrient uptake versus crop nutrient export balance was positive for all nutrients and systems. Planted fallows appear capable of acquiring sufficient nutrient stocks during fallow phases, covering the crops’ demand. Fallow N and K uptake and crop export declined with every fallow/cropping cycle.
DOI: 10.17632/3h3frpkrf8
title: Wind speed data set for Kagoshima, Kochi, and Wakayama

description: This is wind data of the period 1979-2021 containing year, month, day, average wind speed, wind direction, maximum instantaneous wind speed, maximum instantaneous wind direction from JMA.
DOI: 10.6084/m9.figshare.13065986.v34
title: Gastric cancer lymph node data set

description: This is a dataset of pathological lymph nodes for gastric cancer. It can be used to test a gastric cancer lymph node metastasis detection model proposed in "Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning".<br>
DOI: 10.6084/m9.figshare.14464818.v1
title: Supplementary Material for: Kisspeptin Levels in Girls with Precocious Puberty: A Systematic Review and Meta-Analysis

description: <b><i>Background/Aims:</i></b> Kisspeptin (KP) is a key player in the regulation of the release of gonadotropin-releasing hormone (GnRH), which increases the secretion of gonadotropin during puberty to establish reproductive function and regulate the hypothalamic-pituitary-gonadal axis. Premature activation of GnRH secretion leads to idiopathic/central gonadotropin-dependent precocious puberty (CPP). We aimed to compare the blood KP concentrations in girls with CPP and healthy controls. <b><i>Methods:</i></b> A systematic review and meta-analysis was performed. We searched MEDLINE, EMBASE, The Cochrane Library, and SciELO. Random-effects model and standardized mean difference (SMD) were used. Heterogeneity was assessed through <i>I</i><sup>2</sup>. Meta-regression considered patient age, KP fraction, and analytical method for KP measurement. <b><i>Results:</i></b> The 11 studies included comprised 316 CPP patients and 251 controls. Higher KP levels in the CPP group were found (SMD 1.53; CI 95% = 0.56–2.51). Subgroup analysis revealed association with patient age (<i>p</i> = 0.048), indicating a positive correlation between elevation in KP concentration and age in CPP group. A group of patients with precocious thelarche (PT) from 5 of the included studies comprising 121 patients showed higher levels of KP (1.10; −0.25–2.45: CI 95%) and high heterogeneity (<i>I</i><sup>2</sup> = 91%). The CPP/PT ratio for KP level indicates KP 36% higher on CPP than PT patients. <b><i>Conclusions:</i></b> A consistent difference in KP levels between girls with CPP and controls was identified. While there are important limitations in KP assays which argue against its use as a diagnostic tool, the KP levels in CPP versus control and PT children are consistent with the predicted mechanisms and pathophysiology of CPP.
DOI: 10.6084/m9.figshare.7380389.v4
title: A History from Below: Translators in the Publication Network of Four Magazines of China Book Company, 1913-1923

description: This dataset is a direct output of the project titled "<b>Mapping the Translators' Network of the Shanghai Publisher Chung-hua Library (1912-1920s)"</b>, funded by Direct Grant for Research 2016-17 under the Faculty of Arts, Chinese University of Hong Kong.The dataset is the basis of the paper titled <b>“A History from Below: Translators in the Publication Network of Four Magazines of China Book Company, 1913-1923”</b>, forthcoming in 2020 in <i>Translation Studies</i>.The dataset is based on the following reproductions of four early twentieth-century Chinese magazines, published by the China Book Company (Zhonghua tushuguan 中華圖書館):1.Wang Dungen 王鈍根 ed. 1913-1915. <i>Youxi zazhi</i> 遊戲雜誌 [The Pastime]. 19 issues. Shanghai: Zhonghua tushuguan. Microform, Shanghai: Shanghai Library, 2017.2. Wang Dungen 王鈍根, Sun Jiong 孫炯, Chen Diexian 陳蝶仙, Zhou Shoujuan 周瘦鵑, eds. 1914-1916; 1921-1923. <i>Libai Liu</i> 禮拜六 [The Saturday]. 200 issues. Shanghai: Zhonghua tushuguan. Bounded reprint, Yang Zhou: Jiangsu guangling guji keyin she, 1987.3. Wang Junqing 王均卿 ed. 1914-1915. <i>Xiangyan zazhi</i> 香艷雜誌 [Fragrance]. 12 issues. Shanghai: Zhonghua tushuguan. Bounded reprint, Beijing: Xianzhuang shuju, 2007.4. Chen Diexian 陳蝶仙 ed. 1914-1915. <i>Nüzi shijie </i>女子世界 [Ladies’ World]. 6 issues. Shanghai: Zhonghua tushuguan. Microform. Shanghai: Shanghai Library, 2017. The dataset consists of nine items:· Item A contributed items.xlsx, a catalogue of all contributed articles in the magazines, with translations marked;· Item B dataspreadsheet.xlsx, a record of bibliographical information of the contributors and their affiliations as seen in print, with translators marked; · Item C records of translators.xlsx an extract from Item A and B, containing all translators’ names, titles of translated works, and each translator’s translation:publication ratio; · Item D China Book graph.gephi, a Gephi network graph of the publication network of the four magazines of the China Book Company; · Item E China Book graph.pdf and Item F China Book graph in grey.pdf, two visual outputs of Item D, with areas marked for the discussion in the paper; · Item G issue dates.docx, a list of the publication date/year of each magazine issue; · Item H translators with affiliations.docx, a list of publication records of the translators with external affiliations; and · Item I explanatory notes.pdf a document on the rationale of data collection and clean-up.<br>
DOI: 10.6084/m9.figshare.21997106.v1
title: Goat and cow milk-derived extracellular vesicle miRNomes

description: Comparison of goat and cow milk-derived extracellular vesicle miRNomes (microRNA expression profiles) determined usiing RNA-sequencing (NGS).
DOI: 10.17632/tzdzjksvvw
title: Ly_et al_HS_LHR_Coverage_Supplemental

description: https://data.mendeley.com/datasets/tzdzjksvvw/1
DOI: 10.6084/m9.figshare.12369452.v1
title: Variant effect predictor scores used to generate ROC curves

description: Variant effect predictions and DMS data for ClinVar and gnomAD variants in BRCA1, P53, CALM1, PTEN, HRAS and TPK1
DOI: 10.17632/rfhhh54g9m
title: Sample ARPES data

description: This is a sample ARPES spectra and Fermi map data acquired by Scienta-Omicron SES program. The spectra is taken on Bi2Se3 sample.
DOI: 10.6084/m9.figshare.23508336.v1
title: 4a fase Festivales de Cannes: idiomas, (datos escritos en inglés y español); número de producciones

description: Número de veces que un idioma aparece en las películas seleccionadas por el Festival de Cannes, por décadas. Frecuencias. Obtenido de WordMap, de MaxQDA.
DOI: 10.6084/m9.figshare.27129587.v1
title: Additional file 4 of Liberal versus restrictive transfusion strategies in acute myocardial infarction: a systematic review and comparative frequentist and Bayesian meta-analysis of randomized controlled trials

description: Additional file 4.
DOI: 10.17632/jh6fz4dg9z
title: Access to Credit and Agricultural Productivity: Evidence from Kenyan Maize Farmers

description: The primary data for this study came from a survey designed to determine the impact of credit on maize productivity in Kenya. According to Yadav & Rao (2024), 400 smallholder maize farmers in five sub-counties of Trans Nzoia, Kenya, were surveyed between 2020 and 2023. The study focused on 200 maize smallholders who received agricultural credit (treatment group) and 200 who did not receive credit (control group). By Wanzala et al., (2023), the 200 quasi-control group was chosen using a propensity matching score (PMS) that runs a logistic regression of the observable characteristics listed in Table 1. PSM was used to prevent selection bias because the treatment variable (access to agricultural credit) was not randomized. The authors also use sensitivity analysis with "Rosenbaum bounds" to assess the impact of hidden bias. All the farmers in this study produced maize for household consumption, demonstrating that they were credit constrained. Farmers who produced improved maize seed but were not credit-constrained were excluded from the study. This is because these smallholder farmers do not face the same technical production constraints and risks. The treatment group was drawn from the Chereng'any, Kwanza, and Saboti sub-counties. The control group was drawn from the Endebess and Kiminini sub-counties. To reduce potential agricultural input spillovers to the control group in their sublocations, this study separated the treatment and control groups with a 6 km buffer zone (Wanzala et al., 2023).
DOI: 10.17632/kn3s68t6r4
title: To compare the effect of Pelvic PNF with core strengthening on trunk control, balance and gait in patients with paraplegia

description: Individuals suffering from paraplegia have poor trunk and pelvic control which may affect the functional performance and vocational tasks. The interventions on trunk and pelvic control for spinal cord injury individuals was neglected since long. treatment options should be formulated and established to increase trunk and pelvic control for improving gait and balance of the individuals without any side effects. It has been proved as an effective treatment option in improving trunk control, balance and gait among stroke population. This is the first known literature focusing on physiotherapeutic interventions on trunk and pelvic control among spinal cord injury patients. Hence, with this study, it will be used in spinal cord injury (SCI) population as well as it is both cost and time effective.
DOI: 10.17632/tfx9bnf86z
title: Data for: Adherence to non-opioid multimodal analgesia (NOMA) protocol is associated with a shorter length of stay after thoracic surgery

description: Study objective: To review the outcomes of non-opioid multimodal analgesia (NOMA) in patients after thoracic surgery. Design: Retrospective one-year cohort. Setting: Single hospital, level one trauma center. Patients. 29 ASA 2-4 patients after thoracotomy (8), open lung biopsy or video-assisted thoracic surgery (VATS) operated by a single surgeon. Interventions: NOMA protocol included intravenous acetaminophen alternating with ketorolac every 3 hours (each every 6 hours, later converted to oral acetaminophen and ibuprofen) with a low dose (0.05mg/kg/h) IV ketamine infusion up to chest tube removal. Opioids were not routinely prescribed from postoperative day one. Measurements: NOMA adherence versus breach (need for &gt;2 opioid rescue doses/24h) rate and it’s association with the perioperative variables and length of stay was explored from the chart review. Main Results: The median (IQR) postoperative opioid requirement was 3 (0-6) doses per hospital stay. 7/29 patients (CI 10-44%) required &gt;2 opioid rescue doses/24 h. Need for opioid rescue was associated with lower BMI and using hydromorphone as oppose to morphine in the recovery room. 3/29 patients were prescribed opioids on discharge. No patients required opioids on follow-up and 63% were pain-free. Median length of stay was 3 (2-5.25) days in NOMA compliant and 9 (6-11) days in opioid rescue groups (P=0.002). In subgroup analysis length of stay reduction was limited to non-thoracotomy patients.
DOI: 10.6084/m9.figshare.19984715.v1
title: dataset_final.xlsx

description: Data contains environmental features of 160 countries along with socio-economic variables including GDP, and population. Also, the data contains religious features of countries gathered from World Bank Data and other websites. Data covers country-specific data from 2005 to 2017.
DOI: 10.6084/m9.figshare.25058651.v1
title: Global freshwater fish invasion linked to the presence of closely related species

description: These datasets consist of R code, data, phylogenetic tree, and shapefile, along with introductions for the datasets. They are essential for reproducing the results and figures presented in the paper "Global freshwater fish invasion linked to the presence of closely related species" (Xu et al. Nature Communications).In the study, we used a comprehensive freshwater fish occurrence database to explore the biogeographical patterns of non-native fishes and their phylogenetic correlates worldwide. We first presented global biogeographical patterns for both exotic fishes introduced across countries and translocated fishes within those countries. Subsequently, we constructed a global phylogenetic tree of freshwater fish species to quantify the phylogenetic distances between each alien or translocated fish species and native fishes in each river basin within a country. Thereby, we examined the relationship between nonnative-native phylogenetic relatedness and the likelihood of non-native fish occurrence at global, biogeographical realm, and country scales, respectively. Additionally, we calculated the taxonomic and phylogenetic diversity of native fishes in each river basin and examined whether the relationship between phylogenetic relatedness and the occurrence of non-native fish species remains robust when considering the influence of native diversity.
DOI: 10.6084/m9.figshare.5120680.v1
title: Supplementary Material for: Digital Probabilistic Atlas of the Border Region between the Middle and Posterior Cerebral Arteries

description: <i>Background and Purpose:</i> The diagnosis of external borderzone infarction is made when the stroke is located at the border between the arterial territories. Recent studies have raised questions regarding the location of this borderzone given the variability in the arterial territories. We examined the location of this region using a digital approach and its correspondence with the ‘traditional’ template. <i>Methods:</i> Infarcts resulting from occlusion of the middle cerebral artery (MCA) or posterior cerebral artery (PCA) trunk or branches were segmented from T<sub>2</sub>-weighted MR images and linearly registered into a common stereotaxic coordinate space. For MCA infarcts and PCA infarcts, maps of voxels in a rim surrounding the infarct were created. The maps of individual rims were averaged to create images of the probability of each voxel lying in the MCA and PCA rims. The MCA and PCA rims were used to create a digital atlas of the probability of each voxel lying concurrently in both rims. <i>Results:</i> The MCA group consisted of 36 patients (16 males) with a median age of 73 (range 25–87) years. The PCA territory group consisted of 30 patients (24 males) with a median age of 61 (range 22–86) years. The probability of involvement in the digital atlas was higher in the posterior putamen (probability 0.12–0.29) and optic tract (probability 0.13–0.0.20) than in the angular gyrus (probability 0.01). <i>Conclusion:</i> We have created a digital model of the border region between the MCA and PCA territories. This approach may be useful for evaluating the likelihood of a stroke mechanism from topography.
DOI: 10.6084/m9.figshare.21899019.v1
title: Surf Data WCT 2019 - Final.xlsx

description: This dataset is part of a research study on the effect of pressure on performance in elite surfing. <br> Further description of this dataset will be added upon publication of the research.
DOI: 10.6084/m9.figshare.26962402.v1
title: Additional file 1 of Does the distribution of Wormian bone frequencies across different world regions reflect genetic affinity between populations?

description: Supplementary Material 1: Supplementary tables: Table S1. Distribution of craniological series by sex and age. Table S2. Results of Fisher's Exact Test and Chi-Square Test for Association Between Sex and Presence of Trait. Table S3. Results of Fisher's Exact Test and Chi-Square Test for Association Between Age and Presence of Trait. Table S4. MMD values (upper triangular part) and associated SD values (lower triangular part). Table S5. MMD values (upper triangular part) and associated significant indicators *(lower triangular part).
DOI: 10.6084/m9.figshare.24288358.v1
title: Exchange rate forecasting via three currencies (GHS / USD / GBP)

description: This data contains exchange rate forecasting the Ghana cedi (GHS) against the British pound (GBP) and United States dollar (USD)
DOI: 10.6084/m9.figshare.28270673.v1
title: Minimal dataset for postanatal CMV outcomes.xlsx

description: This study investigates the impact of postnatal cytomegalovirus infection on hearing and neurodevelopmental outcomes in infants aged 3–10 months in Eastern Uganda.
DOI: 10.6084/m9.figshare.5603413.v1
title: Earth Analytics Python | 2017 Colorado Floods Twitter data

description: Geolocated and non-geolocated tweet data collected during the 2013 Colorado floods. These data were pulled together for the Earth Analytics course taught in python 2018<br>
DOI: 10.6084/m9.figshare.22304314.v1
title: HybPiper_DIAMOND extraction file from the respective Arabidopsis thaliana references

description: Initially, this gff file was processed by a python script (prepare_hybpiper_gff.py) to add the missing information of the locus name. This file was created by the HybPiper_DIAMOND using the reference file of Arabidopsis thaliana. Further, it was used for comparison with Captus and SECAPR.
DOI: 10.6084/m9.figshare.23540148.v1
title: distribution grid recorded waves

description: The dataset includes the recorded waves of fault indicators deployed in a city distribution grid in 2021. Each sheet represents the recording data of a fault indicator. Each row represents a sample, and the physical meaning of data is shown in the header.
DOI: 10.17632/mpfyk7jcz9
title: A database for nutrients and chlorophyll ‘a’ in the Nielba River (Poland)

description: The database contains results of the modeling study implemented for the agricultural catchment of the Nielba River (Poland) on total nitrogen and phosphorus loads, and chlorophyll ‘a’ concentrations. The study resulted from the research performed by the Interdisciplinary Research Group - Pollutant Transport in a Catchment (http://ochrsrod.agh.edu.pl/index.html). Using the calibrated and verified basin model created in the Macromodel DNS/SWAT [1-6] as a baseline scenario, subsequently the climate change scenarios were superimposed. The future climate conditions analysis covered moderate (RCP4.5) and extrapolative (RCP8.5) scenarios and two time horizons: short-term (2026-2035) and long-time (2046-2055) perspectives from the UAP project [7]. Four climate variant scenarios, with a monthly time step, were prepared to combine the RCP predictions and adopted time horizons: VS1 (RCP4.5 - 2026–2035); VS2 (RCP4.5 - 2046–2055), VS3 (RCP8.5 - 2026–2035), VS4 (RCP8.5 - 2046–2055). To track the total nitrogen loads, phosphorus loads and chlorophyll ‘a’ concentrations on the sub-basin level the Nielba River basin was divided into 7 units. Impacts of climate change scenarios (VS1-4) on TN (kg/m), TP (kg/m) and CHLA (µg/l) for each of these units (sub-basins) are displayed through the selection of database filters. The database consists of three Excel sheets: Sheet 1: Map – location of the Nielba River basin area along with the division into sub-basins including flow-through lakes and sub basins features: elevation, land use and soils classes share in the sub-basin area Sheet 2: Plot – pivot result plot - results of the individual scenarios impact on the nitrogen and phosphorus loads, and chlorophyll ‘a’ concentrations presented in the form of a pivot column chart. By using the "SUB”, “season” and “MON" select buttons user can filter results for the chosen sub-basin, season and month Sheet 3: Output – result values for the all sub-basins and adopted scenarios: average flows, total nitrogen and phosphorus loads, chlorophyll ‘a’ concentrations. Orlińska-Woźniak, P., Szalińska, E.,Wilk, P., 2020a. https://doi.org/10.3390/w12051499 Orlińska-Woźniak, P., Wilk, P., Szalińska, E., 2020b. https://doi.org/10.1016/j.agsy.2020.102858 Szalińska, E., Wilk, P., 2018. Economics and Environment 3 (66), 25–37. Wilk, P., Orlińska-Woźniak, P., Gębala, J., Ostojski,M., 2017. Technical Transactions (11), 137–159. Wilk, P., Orlińska-Woźniak, P., Gębala, J., 2018a. https://doi.org/10.5194/hess-22-1033-2018 Wilk, P., Orlińska-Woźniak, P., Gębala, J., 2018b. https://doi.org/10.5277/epe18040 MPA Project – Urban Adaptation Plans http://klimada.mos.gov.pl/en/mpa-project-urban-adaptation-plans/
DOI: 10.17632/z53y4654fs
title: Two-color 3D dSTORM sample data on Rad51 and RPA

description: This set contains sample two-color 3D dSTORM data published in Haas et al., 2018, Nucleic Acid Research. For more information on the sample, data, and methods description, please refer two the above publication. The data was acquired on Nikon N-STORM in 3D mode using the astigmatism approach. It contains two folders, one for truncated BRCA2 mutation (EUFA) and the other with reconstituted full-length BRCA2 (EUFABRCA2). The data corresponds to 5 hours after exposure to x-ray irradiation and presents super-resolution images of Rad51 and RPA. Each folder contains original data in the '.txt' format and the various analysis steps performed using Grafeo Matlab-based software. The analysis was performed using version 1 of the Grafeo; this and other versions can be found on my GitHub page 'inatamara'. The new updated analysis with the latest Grafeo 3 version should be published shortly.
DOI: 10.6084/m9.figshare.7924007.v1
title: gVCF_HG02049

description: 1000 Genomes gVCF mapped to hs37d5 for HG02049. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307