cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc11vdny
title: CCDC 978690: Experimental Crystal Structure Determination

description: Related Article: Bharat Kumar Tripuramallu, Paulami Manna, Samar K. Das|2014|CrystEngComm|16|4816|doi:10.1039/C3CE42637H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7274/29984365
title: Bottom-Up Proteomic Techniques to Interrogate the Mycobacterial Proteome

description: Tuberculosis (TB) is a respiratory disease caused by the pathogen Mycobacterium tuberculosis (M. tb). This disease is the largest global cause of death by infectious disease, causing illness in 10.8 million people and 1.25 million deaths annually. Despite its major impact on human health, prevention and treatment measures to this disease are limited. Antibiotic treatments are reducing in efficacy due to the onset of multidrug-resistant tuberculosis (MDR-TB). Several techniques are used to study pathogenic mycobacteria. One of them is bottom-up proteomics, an analytical technique used to identify and quantify proteins in biological systems. While proteomics is ubiquitous today, it is often used as a black-box technique when applied to the life sciences. Innovations to proteomics in the analytical community rarely translate into new fit-for-purpose approaches to study disease and pathogens. The result is a gap in knowledge between the most up-to-date analytical methods and the forefront of mycobacterial research. In my dissertation, I describe the contributions I have made to bridge the gap between the mycobacterial research community and the bottom-up proteomics community. I describe two projects in which I apply custom data analysis techniques to my proteomic data in order to discover novel biological conclusions. In another project, I describe a new sample preparation technique I created specifically to quantify mycobacterial protein N-terminal acetylation, a ubiquitous protein post-translational modification. In my final chapter, I detail an aspect of my graduate career outside of bioanalytical chemistry—leadership in laboratory safety. I describe the history of my work as a leader in my department’s Laboratory Safety Officer Program, as well as the later contributions I made in organizing a 2-day Summit sponsored by the American Chemical Society.
DOI: 10.7274/29984365.v1
title: Bottom-Up Proteomic Techniques to Interrogate the Mycobacterial Proteome

description: Tuberculosis (TB) is a respiratory disease caused by the pathogen Mycobacterium tuberculosis (M. tb). This disease is the largest global cause of death by infectious disease, causing illness in 10.8 million people and 1.25 million deaths annually. Despite its major impact on human health, prevention and treatment measures to this disease are limited. Antibiotic treatments are reducing in efficacy due to the onset of multidrug-resistant tuberculosis (MDR-TB). Several techniques are used to study pathogenic mycobacteria. One of them is bottom-up proteomics, an analytical technique used to identify and quantify proteins in biological systems. While proteomics is ubiquitous today, it is often used as a black-box technique when applied to the life sciences. Innovations to proteomics in the analytical community rarely translate into new fit-for-purpose approaches to study disease and pathogens. The result is a gap in knowledge between the most up-to-date analytical methods and the forefront of mycobacterial research. In my dissertation, I describe the contributions I have made to bridge the gap between the mycobacterial research community and the bottom-up proteomics community. I describe two projects in which I apply custom data analysis techniques to my proteomic data in order to discover novel biological conclusions. In another project, I describe a new sample preparation technique I created specifically to quantify mycobacterial protein N-terminal acetylation, a ubiquitous protein post-translational modification. In my final chapter, I detail an aspect of my graduate career outside of bioanalytical chemistry—leadership in laboratory safety. I describe the history of my work as a leader in my department’s Laboratory Safety Officer Program, as well as the later contributions I made in organizing a 2-day Summit sponsored by the American Chemical Society.
DOI: 10.15468/dl.w4x4yc
title: Occurrence Download

description: A dataset containing 57038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 {
 "or" : [
 "Geometry POLYGON((-111.87048 -24.14214,-41.12952 -24.14214,-41.12952 4.14214,-111.87048 4.14214,-111.87048 -24.14214))",
 "Geometry POLYGON((-70.97132 -17.00391,-68.26978 -17.00391,-68.26978 -12.40692,-70.97132 -12.40692,-70.97132 -17.00391))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 57038 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050007-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ppffzg
title: Occurrence Download

description: A dataset containing 30505 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Columba livia",
 "HasCoordinate is true",
 "Country is Ireland"
 ]
}

 The dataset includes 30505 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050052-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15472/1yb05u
title: Mamíferos medianos y grandes registrados mediante fototrampeo en la Reserva Natural de la Sociedad Civil "Refugio del Oso", Santander, Colombia.

description: Este conjunto de datos contiene información sobre la comunidad de mamíferos medianos y grandes registrada mediante cámaras trampa instaladas entre 2017 y 2024 en la Reserva Natural de la Sociedad Civil "Refugio del Oso", ubicada en el municipio de Zapatoca, Santander (Colombia).
En total se recopilaron 55 eventos de muestreo y 916 registros biológicos, que incluyen datos sobre el esfuerzo de monitoreo, fechas, ubicaciones geográficas, especies observadas y metadatos asociados a fotografías y videos. Los registros documentan la presencia de 18 especies pertenecientes a 11 familias.
DOI: 10.5281/zenodo.17417157
title: Bacterial Intestinal Infections: Clinical Presentation, Diagnosis, and Differential Diagnosis
DOI: 10.5281/zenodo.17417158
title: Bacterial Intestinal Infections: Clinical Presentation, Diagnosis, and Differential Diagnosis
DOI: 10.15468/dl.pra2uh
title: Occurrence Download

description: A dataset containing 1126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Picea orientalis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1126 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050056-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fakfse
title: Occurrence Download

description: A dataset containing 426 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Casearia aculeata"
 ]
}

 The dataset includes 426 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050057-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dm4dep
title: Occurrence Download

description: A dataset containing 2620188 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Corybas abditus, Melaleuca cardiophylla, Melaleuca halophila, Melaleuca microphylla, Melaleuca squarrosa, Poa binata, Decachaeta haenkeana, Viola chelmea, Viola araucaniae, Thymelaea sanamunda, Boechera elkoensis, Acanthus ebracteatus, Carthamus rechingeri, Anthospermum littoreum, Melaleuca villosisepala, Ficinia anceps, Ficinia elatior, Ficinia micrantha, Ficinia minutiflora, Tradescantia commelinoides, Ficinia montana, Viola sandrasea, Viola sieberiana, Viola eminens, Viola roccabrunensis, Melaleuca styphelioides, Sphaeralcea incana, Chamaecrista maritima, Dolichos linearis, Acmadenia candida, Aristotelia australasica, Pycnocycla glauca, Viola pedunculata, Viola pachyrrhiza, Viola johnstonii, Viola caleyana, Conospermum ellipticum, Conospermum stoechadis, Haloragis platycarpa, Viola portulacea, Cordia sonorae, Melaleuca bisulcata, Melaleuca bracteata, Melaleuca dissitiflora, Melaleuca megacephala, Melaleuca minutifolia, Melaleuca teretifolia, Poa atropurpurea, Osmunda regalis, Viola collina, Viola gaviolii, Romulea minutiflora, Romulea namaquensis, Romulea sulphurea, Ficinia esterhuyseniae, Poa ensiformis, Poa laxa, Poa meionectes, Puccinellia longior, Viola, Viola rosulata, Viola gracilis, Viola taltalensis, Sphaeralcea emoryi, Boechera ultraalsa, Cuphea jorullensis, Loeflingia squarrosa, Achyranthes aspera, Acmadenia tetracarpellata, Lucuma bifera, Lucuma campechiana, Leucojum aestivum, Navarretia peninsularis, Navarretia viscidula, Romulea, Viola dukadjinica, Viola hispida, Viola kerneri, Viola biflora, Viola arsenica, Montinia caryophyllacea, Brachychiton discolor, Conospermum boreale, Conospermum flexuosum, Conospermum toddii, Haloragis stricta, Cuphea llavea, Cuphea lobophora, Viola saxifraga, Gaudichaudia implexa, Sphaeralcea axillaris, Melaleuca ordinifolia, Melaleuca pulchella, Melaleuca sieberi, Melaleuca trichophylla, Tetraria fourcadei, Poa sclerocalamos, Poa androgyna, Poa chaixii, Anisomeles farinacea)",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 2620188 records from 4217 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050027-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25764810.v1
title: Ch3_Sup. Data S1.

description: Differential Expression analysis of transcript isoform of genes; Fg.logFC. log Fold Change of F. graminearum(Fg); Fv.logFC. log Fold change of F. verticillioide(Fv); Ta.logFC. log Fold Change of T. atriviride(Ta); and Um.logFC. log Fold Change of U. maydis(Um) affected samples silk of Z. mays. red colour denoted up-regulated while green is down regulated.
DOI: 10.15468/dl.xgnsbz
title: Occurrence Download

description: A dataset containing 654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nimravidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 654 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057923-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25764810
title: Ch3_Sup. Data S1.

description: Differential Expression analysis of transcript isoform of genes; Fg.logFC. log Fold Change of F. graminearum(Fg); Fv.logFC. log Fold change of F. verticillioide(Fv); Ta.logFC. log Fold Change of T. atriviride(Ta); and Um.logFC. log Fold Change of U. maydis(Um) affected samples silk of Z. mays. red colour denoted up-regulated while green is down regulated.
DOI: 10.15468/dl.190z5u
title: Occurrence Download

description: A dataset containing 6160 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cladophora rupestris (L.) Kütz.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6160 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002371-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qmmkk
title: Occurrence Download

description: A dataset containing 1415 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalus ornatus Hallowell, 1854"
 ]
}

 The dataset includes 1415 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000526-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-33166
title: Claims (GX 13106 - GX 13463), 1987

description: Collection of claims filed against the LAPD with regards ranging from wrongful death to violation of civil rights, etc., 1987. PART OF A SERIES: The series includes materials related to the work product of Price Waterhouse, whose staff investigated citizen complaints and civil litigation claims involving the LAPD. Included are claims reports, claims analyses, card files, and arbitration reports; summaries of 83 selected civil litigation cases; materials from the personnel files of LAPD officers named in these cases, as well as documents listing their subsequent penalties; and statistics that break complaints down according to a variety of criteria, including race, gender, and police division.
DOI: 10.15468/dl.tewvbp
title: Occurrence Download

description: A dataset containing 2497 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ortalis ruficauda Jardine, 1847",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2497 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002371-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eubp2r
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Merodon ottomanus Hurkmans, 1993"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005251-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l4wtyw
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Total foraminifera counts of multinet POS231/3_MSN1329"
 ]
}

 The dataset includes 117 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002371-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-33188
title: Claims (GX 13106 - GX 13463), 1987

description: Collection of claims filed against the LAPD with regards ranging from wrongful death to violation of civil rights, etc., 1987. PART OF A SERIES: The series includes materials related to the work product of Price Waterhouse, whose staff investigated citizen complaints and civil litigation claims involving the LAPD. Included are claims reports, claims analyses, card files, and arbitration reports; summaries of 83 selected civil litigation cases; materials from the personnel files of LAPD officers named in these cases, as well as documents listing their subsequent penalties; and statistics that break complaints down according to a variety of criteria, including race, gender, and police division.
DOI: 10.15468/dl.suve2q
title: Occurrence Download

description: A dataset containing 108166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phocidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 108166 records from 270 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057928-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x46t9h
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((32.54185 -26.67933,33.49645 -26.67933,33.49645 -25.64549,32.54185 -25.64549,32.54185 -26.67933))",
 "HasCoordinate is true",
 "TaxonKey is Cetacea"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002804-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nppzn3
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudathyrium alpestre (Hoppe) Newman",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Japan"
 ]
}

 The dataset includes 56 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002810-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.423wdc
title: Occurrence Download

description: A dataset containing 455924 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Oenothera grandiflora L'Her., Oenothera grandis (Britton) Rydb., Oenothera indecora Cambess., Oenothera jamesii Torr. & A.Gray, Oenothera laciniata Hill, Oenothera ×latipetala (Soldano) Soldano, Oenothera longiflora L., Oenothera oakesiana (A.Gray) J.W.Robbins ex S.Watson, Oenothera parodiana Munz, Oenothera parviflora L., Oenothera rosea Aiton, Oenothera ×rubricaulis Kleb., Oenothera ×sesitensis Soldano, Oenothera stricta Link, Oenothera ×stucchii Soldano, Oenothera tetraptera Cav., Oenothera villosa Thunb., Oldenlandia corymbosa L., Oldenlandia pumila (L.f.) DC., Olea europaea L.)"
 ]
}

 The dataset includes 455924 records from 1262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007649-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.er2qby
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zebrus zebrus (Risso, 1827)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 49 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010854-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/aw94-d960
title: Observations from SNAP program 16773

description: Imaging of gravitational lenses. See AGEL survey data release 2 paper (Barone et al. 2025) for details.
DOI: 10.15468/dl.6fgwqg
title: Occurrence Download

description: A dataset containing 716 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melipona costaricensis Cockerell, 1920"
 ]
}

 The dataset includes 716 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006547-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/dn2j-nz22
title: Observations from GAP program 17307

description: Imaging of gravitational lenses. See AGEL survey data release 2 paper (Barone et al. 2025) for details.
DOI: 10.15468/dl.365u32
title: Occurrence Download

description: A dataset containing 716 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melipona costaricensis Cockerell, 1920"
 ]
}

 The dataset includes 716 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006548-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hsvk4q
title: Occurrence Download

description: A dataset containing 33493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Azadirachta indica A.Juss."
 ]
}

 The dataset includes 33493 records from 445 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006549-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/kpvc-r906
title: Observations from SNAP program 15867

description: Imaging of gravitational lenses. See Huang et al. 2025 for more details.
DOI: 10.15468/dl.2szzdt
title: Occurrence Download

description: A dataset containing 297552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aegypius monachus (Linnaeus, 1766)"
 ]
}

 The dataset includes 297552 records from 284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006541-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnk364
title: Occurrence Download

description: A dataset containing 107006371 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 107006371 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006541-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.jr8rttrx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (972 records)
DOI: 10.15468/dl.pv6gmh
title: Occurrence Download

description: A dataset containing 118891 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sarcoptiformes",
 "Year is greater than or equal to 2000",
 "Continent is Europe"
 ]
}

 The dataset includes 118891 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006546-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14977184
title: UCI Capstone: Spectrogram Data of Generated and Real Audios
DOI: 10.5281/zenodo.14977185
title: UCI Capstone: Spectrogram Data of Generated and Real Audios
DOI: 10.15468/dl.h3u3a3
title: Occurrence Download

description: A dataset containing 651 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Rodriguezia lanceolata Ruiz & Pav."
 ]
}

 The dataset includes 651 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006554-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.