cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.nv892mp
title: Data from: Peripheral synucleinopathy in a DJ1 patient with Parkinson disease, cataracts, and hearing loss

description: Whereas Parkinson disease (PD) is usually sporadic, PD with onset under 50
 years old can be associated with genetic abnormalities, including rare
 biallelic mutations in the DJ1 gene (PARK7).1 The DJ1 phenotype is
 incompletely described and has been presumed to be similar to the Parkin
 (PARK2) phenotype, in which atypical clinical features are usually absent,
 and, in contrast to idiopathic PD, synucleinopathy is lacking and
 olfaction preserved.2 Whether DJ1 patients have peripheral synucleinopathy
 and olfactory dysfunction has been unknown.
description: appendix
 e-1Clinical characteristics
 of published biallelic DJ1 cases.
DOI: 10.5061/dryad.8c3hr65
title: Data from: Topological materials discovery by large-order symmetry indicators

description: Crystalline symmetries play an important role in the classification of
 band structures, and their richness leads to various topological
 crystalline phases. On the basis of our recently developed method for the
 efficient discovery of topological materials using symmetry indicators, we
 explore topological materials in five space groups, which are diagnosed by
 large-order symmetry indicators and support the coexistence of several
 kinds of gapless boundary states in a single compound. We predict many
 candidate materials; some representatives include Pt3Ge, graphite, XPt3,
 Au4Ti, and Ti2Sn. As by-products, we also find that AgXF3 and AgAsX are
 good Dirac semimetals with clean Fermi surfaces. The proposed materials
 provide a good platform for studying the novel properties emerging from
 the interplay between different types of boundary states.
description: The source codes of
 topological materials discovery algorithm based on symmetry
 indicatorsThe zip file contains
 the manual, source codes of symmetry indicators and all the input/output
 files for all the materials in the article.aau8725_Source
 code.zip
DOI: 10.5061/dryad.jq8bg5c
title: Data from: Fatiguing effects of indirect vibration stimulation in upper limb muscles- post and during isometric contractions superimposed on upper limb vibration

description: Whole body vibration and upper limb vibration (ULV), continues to gain
 popularity as exercise intervention for rehabilitation and sports
 applications. However, the fatiguing effects of indirect vibration
 stimulation are not yet fully understood. We investigated the effects of
 ULV stimulation superimposed on fatiguing isometric contractions using a
 purpose developed upper limb stimulation device. Thirteen healthy
 volunteers were exposed to both ULV superimposed to fatiguing isometric
 contractions (V) and isometric contractions alone- Control (C). Both
 Vibration (V) and Control (C) exercises were performed at 80% of the
 maximum voluntary contractions. The stimulation used was 30 Hz frequency
 of 0.4 mm amplitude. Surface-electromyographic (EMG) activity of the
 Biceps Brachii, Triceps Brachii, and Flexor Carpi Radialis were measured.
 EMG amplitude (EMGrms) and mean frequency (MEF) were computed to quantify
 muscle activity and fatigue levels. All muscles displayed significantly
 higher reduction in MEFs and corresponding significant increase in EMGrms
 with the V than the Control, during fatiguing contractions (P &lt;
 0.05). Post vibration, all muscles showed higher levels of MEFs after
 recovery compared to the control. Our results show that near maximal
 isometric fatiguing contractions superimposed on vibration stimulation
 lead to a higher rate of fatigue development compared to the isometric
 contraction alone in the upper limb muscles. Results also show higher
 manifestation of mechanical fatigue post treatment with vibration compared
 to the control. Vibration superimposed on isometric contraction not only
 seems to alter the neuromuscular function during fatiguing efforts by
 inducing higher neuromuscular load but also post vibration treatment.
description: MVCs_MEF+MDF
 CalculationsData calculations of
 Maximum voluntary contractions' mean and median
 frequencies.MVCs_RMS
 CalculationsData calculations of
 Maximum voluntary contractions'Trial 80%_RMS
 CalculationsData calculations of
 root mean square values (RMS) at 80% of maximum voluntary
 contractions'.
DOI: 10.5061/dryad.5j0h14j
title: Data from: Ceramsite production from sediment in Beian River: characterization and parameter optimization

description: In order to realize pollution control and resource recovery, sediment from
 Beian River was used for ceramsite production. Orthogonal experiment was
 adopted to determine the best condition for ceramsite production from
 sediment, also the heavy metal leaching experiment was performed for
 environmental safety. The result demonstrated that the optimum conditions
 were sewage sludge ratio of 15%, binder ratio of 5%, pre-heating
 temperature of 450℃, sintering temperature of 1150℃ and the firing time
 was 23min. Besides, the heavy metal leaching of ceramsite showed that the
 ceramsite produced met with the China’s industrial standard of CJ/T
 299-2008 and the concentration of heavy metals in the lixivium was lower
 than the threshold of GB/T 5085.3-2007. The research demonstrated that
 ceramsite production is a feasible way for utilization of sediment.
description: data
 availability
DOI: 10.5061/dryad.6045tk0
title: Data from: Label-free sensitive detection of influenza virus using PZT discs with a synthetic sialylglycopolymer receptor layer

description: We describe rapid, label-free detection of Influenza A viruses using the
 first radial mode of oscillations of lead zirconate titanate (PZT)
 piezoelectric disks with a 2-mm radius and 100-µm thickness fabricated
 from a piezoelectric membrane. The disks are modified with a synthetic
 sialylglycopolymer receptor layer,and the coated disks are inserted in a
 ﬂowing virus suspension. Label-free detection of the virus is achieved by
 monitoring the disk radial mode resonance frequency shift. Piezo
 transducers with sialylglycopolymer sensor layers exhibited a long
 lifetime, a high sensitivity, and the possibility of regeneration. We
 demonstrate positive, label-free detection of Influenza A viruses at
 concentrations below 10^5 virus particles per millilitre. We show that
 label-free, selective, sensitive detection of Influenza viruses by home
 appliances is possible in principle.
description: V6_106.009AFM image of virus particles partially dipped in the receptor layer on Figure 7aV6_106.010AFM image of virus particles removed by force and applied by AFM cantilever on Figure 7b10_5_vp_ml-1Raw data of experiments with virus concentration 10^5 vp/ml10_6_vp_ml-1Raw data of experiments with virus concentration 10^6 vp/ml10_7_vp_mlRaw data of experiments with virus concentration 10^7 vp/ml for the graph presented on Figure 810_5_vp_ml-2Raw data of the second independent experiment with 10^5 vp/ml on Figure 910_5_vp_ml-3Raw data of the third independent experiment with 10^5 vp/ml on Figure 910_6_vp_ml-2Raw data of the experiment after the first regeneration for the graph presented on Figure 1010_6_vp_ml-3Raw data of the experiment after the second regeneration for the graph presented on Figure 10DescriptionDescription to all files.
DOI: 10.5061/dryad.df66th2
title: Data from: Inverse dispersal patterns in a group of ant parasitoids (Hymenoptera: Eucharitidae: Oraseminae) and their ant hosts

description: When postulating evolutionary hypotheses for diverse groups of taxa using
 molecular data, there is a tradeoff between sampling large numbers of taxa
 with a few Sanger sequenced genes or sampling fewer taxa with hundreds to
 thousands of next-generation sequenced genes. High taxon sampling enables
 the testing of evolutionary hypotheses that are sensitive to sampling bias
 (i.e. dating, biogeography, and diversification analyses), whereas high
 character sampling improves resolution of critical nodes. In a group of
 ant parasitoids (Hymenoptera: Eucharitidae: Oraseminae), we analyze both
 of these types of datasets independently (203 taxa with 5 Sanger loci; 92
 taxa with 348 Anchored Hybrid Enrichment loci) and in combination (229
 taxa, 353 loci) to explore divergence dating, biogeography, host
 relationships, and differential rates of diversification. Oraseminae
 specialize as parasitoids of the immature stages of ants in the subfamily
 Myrmicinae (Hymenoptera: Formicidae), with ants in the genus Pheidole
 being their most common and presumed ancestral host. A general assumption
 is that the distribution of the parasite must be limited by any range
 contraction or expansion of its host. Recent studies support a single New
 World to Old World dispersal pattern for Pheidole approximately 11–22 Ma.
 Using multiple phylogenetic inference methods (parsimony, maximum
 likelihood, dated Bayesian, and coalescent analyses), we provide a robust
 phylogeny showing that Oraseminae dispersed in the opposite direction,
 from Old World to New World, approximately 24–33 Ma, which implies that
 they existed in the Old World prior to their presumed ancestral hosts.
 Their dispersal into the New World appears to have promoted an increased
 diversification rate. Both the host and parasitoid show single
 unidirectional dispersals in accordance with the presence of the Beringian
 Land Bridge during the Oligocene, a time when the changing northern
 climate likely limited the dispersal ability of such tropically adapted
 groups.
description: Sanger, AHE, and
 combined datasets and program filesContains the alignments
 for all datasets, partitions, trees, and files with parameters for various
 programs.Dryad_data.zip
DOI: 10.5061/dryad.2ss22k3
title: Data from: Measures of obesity are associated with MRI markers of brain aging: the Northern Manhattan Study

description: Objective: To examine associations between measures of obesity in middle
 to early-old age with later-life MRI markers of brain aging. Methods: We
 analyzed data from the Northern Manhattan MRI Sub-Study (n = 1,289). Our
 exposures of interest were body mass index (BMI), waist circumference
 (WC), waist-to-hip ratio, and plasma adiponectin levels. Our outcomes of
 interest were total cerebral volume (TCV), cortical thickness, white
 matter hyperintensity volume (WMHV), and subclinical brain infarcts (SBI).
 Using multivariable linear and logistic regression models adjusted for
 sociodemographics, health behaviors, and vascular risk factors, we
 estimated β coefficients (or odds ratios) and 95% confidence intervals
 (CIs) and tested interactions with age, sex, and race/ethnicity. Results:
 On average at baseline, participants were aged 64 years and had 10 years
 of education; 60% were women and 66% were Caribbean Hispanic. The mean
 (SD) time lag between baseline and MRI was 6 (3) years. Greater BMI and WC
 were significantly associated with thinner cortices (BMI β [95% CI] −0.089
 [−0.153, −0.025], WC β [95% CI] −0.103 [−0.169, −0.037]) in fully adjusted
 models. Similarly, compared to those with BMI &lt;25, obese
 participants (BMI ≥30) exhibited smaller cortical thickness (β [95% CI]
 −0.207 [−0.374, −0.041]). These associations were particularly evident for
 those aged &lt;65 years. Similar but weaker associations were observed
 for TCV. Most associations with WMHV and SBI did not reach statistical
 significance. Conclusions: Adiposity in early-old age is related to
 reduced global gray matter later in life in this diverse sample. Future
 studies are warranted to elucidate causal relationships and explore
 region-specific associations.
description: Supplemental Tables_01
 02 19
DOI: 10.5061/dryad.cb010bf
title: Data from: Genetic variation at MHC class II loci influences both olfactory signals and scent discrimination in ring-tailed lemurs

description: Background. Diversity at the Major Histocompatibility Complex (MHC) is
 critical to health and fitness, such that MHC genotype may predict an
 individual’s quality or compatibility as a competitor, ally, or mate.
 Moreover, because MHC products can influence the components of bodily
 secretions, an individual’s body odors may signal its MHC composition and
 influence partner identification or mate choice. Here, we investigated
 MHC-based signaling and recipient sensitivity by testing for odor-gene
 covariance and behavioral discrimination of MHC diversity and pairwise
 dissimilarity in a strepsirrhine primate, the ring-tailed lemur (Lemur
 catta). Methods. First, we coupled genotyping of the MHC class II gene,
 DRB, with gas chromatography-mass spectrometry of genital gland secretions
 to investigate if functional genetic diversity is signaled by the chemical
 diversity of lemur scent secretions. We also assessed if the chemical
 similarity between individuals correlated with their MHC-DRB similarity.
 Next, we assessed if lemurs discriminated this chemically encoded, genetic
 information in opposite-sex conspecifics. Results. We found that both
 sexes signaled overall MHC-DRB diversity and pairwise MHC-DRB similarity
 via genital secretions, but in a sex- and season-dependent manner.
 Additionally, the sexes discriminated absolute and relative MHC-DRB
 diversity in the genital odors of opposite-sex conspecifics, suggesting
 that lemur genital odors function to advertise genetic quality.
 Conclusions. In summary, genital odors of ring-tailed lemurs provide
 honest information about an individual’s absolute and relative MHC
 quality. Complementing evidence in humans and Old World monkeys, we
 suggest that reliance on scent signals to communicate MHC quality may be
 important across the primate lineage.
description: Male Genotype &
 Chemical data CSVFemale Genotype &
 Chemical data CSVMale Bioassay Behavior
 CSVFemale Bioassay Behavior
 CSV
DOI: 10.5281/zenodo.3689287
title: An Open-set Recognition and Few-Shot Learning Dataset for Audio Event Classification in Domestic Environments

description: The problem of training a deep neural network with a small set of positive samples is known as few-shot learning (FSL). It is widely known that traditional deep learning (DL) algorithms usually show very good performance when trained with large datasets. However, in many applications, it is not possible to obtain such a high number of samples. In the image domain, typical FSL applications are those related to face recognition. In the audio domain, music fraud or speaker recognition can be clearly benefited from FSL methods. This paper deals with the application of FSL to the detection of specific and intentional acoustic events given by different types of sound alarms, such as door bells or fire alarms, using a limited number of samples. These sounds typically occur in domestic environments where many events corresponding to a wide variety of sound classes take place. Therefore, the detection of such alarms in a practical scenario can be considered an open-set recognition (OSR) problem. To address the lack of a dedicated public dataset for audio FSL, researchers usually make modifications on other available datasets. This paper is aimed at providing the audio recognition community with a carefully annotated dataset for FSL and OSR comprised of 1360 clips from 34 classes divided into pattern sounds and unwanted sounds. To facilitate and promote research in this area, results with two baseline systems (one trained from scratch and another based on transfer learning), are presented.
DOI: 10.5281/zenodo.3689288
title: An Open-set Recognition and Few-Shot Learning Dataset for Audio Event Classification in Domestic Environments

description: The problem of training a deep neural network with a small set of positive samples is known as few-shot learning (FSL). It is widely known that traditional deep learning (DL) algorithms usually show very good performance when trained with large datasets. However, in many applications, it is not possible to obtain such a high number of samples. In the image domain, typical FSL applications are those related to face recognition. In the audio domain, music fraud or speaker recognition can be clearly benefited from FSL methods. This paper deals with the application of FSL to the detection of specific and intentional acoustic events given by different types of sound alarms, such as door bells or fire alarms, using a limited number of samples. These sounds typically occur in domestic environments where many events corresponding to a wide variety of sound classes take place. Therefore, the detection of such alarms in a practical scenario can be considered an open-set recognition (OSR) problem. To address the lack of a dedicated public dataset for audio FSL, researchers usually make modifications on other available datasets. This paper is aimed at providing the audio recognition community with a carefully annotated dataset for FSL and OSR comprised of 1360 clips from 34 classes divided into pattern sounds and unwanted sounds. To facilitate and promote research in this area, results with two baseline systems (one trained from scratch and another based on transfer learning), are presented.
DOI: 10.5258/soton/wp00840
title: Constrained estimates of 2015-2030 total number of people per grid square at a resolution of 30 arc (approximately 1km at the equator) R2025A version v1.

description: Constrained estimates of 2015-2030 total number of people per grid square at a resolution of 30 arc (approximately 1km at the equator) R2025A version v1. Global Demographic Data Project - Funded by The Bill and Melinda Gates Foundation (INV-045237). WorldPop - School of Geography and Environmental Science, University of Southampton
DOI: 10.5061/dryad.gn74mt3
title: Data from: SUDEP in the North American SUDEP Registry: the full spectrum of epilepsies

description: Objective: To obtain medical records, family interviews, and death-related
 reports of sudden unexpected death in epilepsy (SUDEP) cases to better
 understand SUDEP. Methods: All cases referred to the North American SUDEP
 Registry (NASR) between October 2011 and June 2018 were reviewed; cause of
 death was determined by consensus review. Available medical records, death
 scene investigation reports, autopsy reports, and next-of-kin interviews
 were reviewed for all cases of SUDEP. Seizure type, EEG, MRI, and SUDEP
 classification were adjudicated by 2 epileptologists. Results: There were
 237 definite and probable cases of SUDEP among 530 NASR participants.
 SUDEP decedents had a median age of 26 (range 1–70) years at death, and
 38% were female. In 143 with sufficient information, 40% had generalized
 and 60% had focal epilepsy. SUDEP affected the full spectrum of
 epilepsies, from benign epilepsy with centrotemporal spikes (n = 3, 1%) to
 intractable epileptic encephalopathies (n = 27, 11%). Most (93%) SUDEPs
 were unwitnessed; 70% occurred during apparent sleep; and 69% of patients
 were prone. Only 37% of cases of SUDEP took their last dose of antiseizure
 medications (ASMs). Reported lifetime generalized tonic-clonic seizures
 (GTCS) were &lt;10 in 33% and 0 in 4%. Conclusions: NASR participants
 commonly have clinical features that have been previously been associated
 with SUDEP risk such as young adult age, ASM nonadherence, and frequent
 GTCS. However, a sizeable minority of SUDEP occurred in patients thought
 to be treatment responsive or to have benign epilepsies. These results
 emphasize the importance of SUDEP education across the spectrum of
 epilepsy severities. We aim to make NASR data and biospecimens available
 for researchers to advance SUDEP understanding and prevention.
description: Interview
 NASRIRB-approved interview
 script for the North American SUDEP Registry.
DOI: 10.5061/dryad.kj34mq9
title: Data from: Influence of host plant, geography and pheromone strain on genomic differentiation in sympatric populations of Ostrinia nubilalis

description: Patterns of mating for the European corn borer (Ostrinia nubilalis) moth
 depend in part on variation in sex-pheromone blend. The ratio of (E)-11-
 and (Z)-11-tetradecenyl acetate (E11- and Z11-14:OAc) in the pheromone
 blend that females produce and males respond to differs between strains of
 O. nubilalis. Populations also vary in female oviposition preference for
 and larval performance on maize (C4) and non-maize (C3) host plants. The
 relative contributions of sexual and ecological trait variation to the
 genetic structure of O. nubilalis remains unknown. Host-plant use (13C/14C
 ratios) and genetic differentiation was estimated among sympatric E and Z
 pheromone strain O. nubilalis males collected in sex-pheromone baited
 traps at 12 locations in Pennsylvania and New York between 2007 and 2010.
 Among genotypes at 65 single nucleotide polymorphism marker loci, variance
 at a position in the pheromone gland fatty acyl-reductase (pgfar) gene at
 the locus responsible for determining female pheromone ratio (Pher)
 explained 64% of the total genetic differentiation between males attracted
 to different pheromones (male response, Resp), providing evidence of
 sexual inter-selection at these unlinked loci. Principal coordinate,
 Bayesian clustering, and distance-based redundancy analysis (dbRDA)
 demonstrate that host plant history or geography does not significantly
 contribute to population variation or differentiation among males. In
 contrast, these analyses indicate that pheromone response and
 pgfar-defined strain contribute significantly to population genetic
 differentiation. This study suggests that behavioral divergence likely
 plays a larger role in driving genetic variation compared to host
 plant-defined ecological adaptation.
description: Table
 S1Sample and genotype data
 for 1,421 male Ostrinia nubilalis collected across 12 locations in New
 York and Pennslyvania between 2008 and 2012. Nomenclature and details
 regarding Sequenom single nucleotide polymomorphism (SNP) marker loci are
 as described by Coates et al., 2011a), and nucleotide calls derived from
 the pgfar PCR-RFLP assays are as described by Coates et al. (2013a) and
 used to define corresponding pheromone strain. Assignment of host plant to
 each individual is derived from stable carbon isotope estimates for C3
 (δ13C range of -22 to -32) and C4 (δ13C range of -8 to -17) according to
 the Materials and Methods.
DOI: 10.5281/zenodo.15916643
title: Filtered-Connectivity-Matrices-Mullus-barbatus-Northwestern-Mediterranean

description: This repository contains the filtered connectivity matrices used in the article "Early-life dispersal and adult natural markers reveal between- and within-stock connectivity: challenging the stock unit paradigm in Mediterranean fisheries" (DOI: XXXX). It includes four .zip files:

main: Contains the connectivity matrices from the simulation set where all three filters were applied.

B200_Tf_Nf, Sf_Nf, B200_Nf: Contain matrices from the corresponding sensitivity analyses, where one or two filters were removed.

Each .zip file includes 910 filtered daily connectivity matrices ("T") representing larval dispersal patterns during the red mullet spawning season—spanning from May 1st (day 1) to July 30th (day 91), for each year between 2009 and 2018. July 31st was excluded, as no larval release was assumed for that day.

In addition to the matrices, the four .zip files also contain the 910 daily calculated connectivity indices ("ConnectInd") corresponding to each simulation.