cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30474329.v1
title: Additional file 5 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 5: Table S5. Overlapping events among the cohorts.(a) Overlapping differentially expressed alternative spicing events between the Clariom D and TCGA-PRAD datasets. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma. (b) Overlapping differentially expressed alternative spicing events between the Clariom D and PRJEB2449 datasets. (c) Overlapping differentially expressed alternative spicing events across the Clariom D, TCGA-PRAD and PRJEB2449 datasets. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma. (d) Overlapping differentially expressed alternative spicing events observed between the TCGA-PRAD and PRJEB2449 datasets. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma.
DOI: 10.6084/m9.figshare.30474332
title: Additional file 6 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 6: Table S6. Differentially expressed splicing factors and prognostic alternative splicing events. (a) Results of the differential gene expression analysis of the splicing factors in the TCCGA-PRAD dataset. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; logFC: log2 transformed fold change; AveExpr: average expression (log2-transformed) for the gene over all samples; t: moderated t-statistic; P.Value: raw p-value; adj.P.Val:adjusted p-value using Benjamini-Hochberg (BH) approach; B: log-odds. (b) Results of the univariate Cox regression analysis of the biochemical recurrence-free survival (BCRFS)-associated events in the TCGA-PRAD datasets. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; z: the values of the Wald statistic; HR: hazard ratio of the event; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test.
DOI: 10.6084/m9.figshare.30474332.v1
title: Additional file 6 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 6: Table S6. Differentially expressed splicing factors and prognostic alternative splicing events. (a) Results of the differential gene expression analysis of the splicing factors in the TCCGA-PRAD dataset. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; logFC: log2 transformed fold change; AveExpr: average expression (log2-transformed) for the gene over all samples; t: moderated t-statistic; P.Value: raw p-value; adj.P.Val:adjusted p-value using Benjamini-Hochberg (BH) approach; B: log-odds. (b) Results of the univariate Cox regression analysis of the biochemical recurrence-free survival (BCRFS)-associated events in the TCGA-PRAD datasets. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; z: the values of the Wald statistic; HR: hazard ratio of the event; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test.
DOI: 10.6084/m9.figshare.30474335
title: Additional file 7 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 7: Table S7. Screening for candidate prognostic events associated with BCRFS. (a) Univariate Cox regression analysis of overlapping differentially expressed alternative splicing (DEAS) events identified in both The Cancer Genome Atlas-Prostate Adenocarcinoma (TCGA-PRAD) and PRJEB2449 cohorts, as related to the biochemical recurrence-free survival (BCRFS) of prostate cancer (PCa) patients.z: the values of the Wald statistic; HR: hazard ratio of the event; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test. (b) Kaplan–Meier analysis of the overlapping differentially expressed alternative splicing (DEAS) events identified in both The Cancer Genome Atlas-Prostate Adenocarcinoma (TCGA-PRAD) and PRJEB2449 cohorts, with regard to the biochemical recurrence-free survival (BCRFS) of prostate cancer (PCa) patients. 'p-value' refers to the statistical significance as determined by the log-rank test. (c) Multivariate Cox regression analysis of the 21 intersected events identified from both the univariate Cox regression and the Kaplan–Meier (KM) analyses, pertaining to the biochemical recurrence-free survival (BCRFS) of prostate cancer (PCa) patients. The coefficients are represented by 'coef'; HR: hazard ratio of the event; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test.
DOI: 10.6084/m9.figshare.30474335.v1
title: Additional file 7 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 7: Table S7. Screening for candidate prognostic events associated with BCRFS. (a) Univariate Cox regression analysis of overlapping differentially expressed alternative splicing (DEAS) events identified in both The Cancer Genome Atlas-Prostate Adenocarcinoma (TCGA-PRAD) and PRJEB2449 cohorts, as related to the biochemical recurrence-free survival (BCRFS) of prostate cancer (PCa) patients.z: the values of the Wald statistic; HR: hazard ratio of the event; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test. (b) Kaplan–Meier analysis of the overlapping differentially expressed alternative splicing (DEAS) events identified in both The Cancer Genome Atlas-Prostate Adenocarcinoma (TCGA-PRAD) and PRJEB2449 cohorts, with regard to the biochemical recurrence-free survival (BCRFS) of prostate cancer (PCa) patients. 'p-value' refers to the statistical significance as determined by the log-rank test. (c) Multivariate Cox regression analysis of the 21 intersected events identified from both the univariate Cox regression and the Kaplan–Meier (KM) analyses, pertaining to the biochemical recurrence-free survival (BCRFS) of prostate cancer (PCa) patients. The coefficients are represented by 'coef'; HR: hazard ratio of the event; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test.
DOI: 10.6084/m9.figshare.30474338
title: Additional file 8 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 8: Table S8. Cox regression between our event signature and traditional clinicopathological parameters. (a) Univariate and multivariate Cox regression of the alternative splicing event signature and clinicopathological factors with respect to the biochemical recurrence-free survival of prostate cancer patients in the TCGA-PRAD training set. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; Age: age at diagnosis; T stage: tumour stage; N stage: lymph node status (N0 = without lymph node metastasis; N1 = with lymph node metastasis). HR: hazard ratio of the parameter; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test. (b) Univariate and multivariate Cox regression of the alternative splicing event signature and clinicopathological factors with respect to the biochemical recurrence-free survival of prostate cancer patients in the TCGA-PRAD testing set. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; Age: age at diagnosis; T stage: tumour stage; N stage: lymph node status (N0 = without lymph node metastasis; N1 = with lymph node metastasis). HR: hazard ratio of the parameter; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test. (c) Univariate and multivariate Cox regression of the alternative splicing event signature and clinicopathological factors with respect to the biochemical recurrence-free survival of prostate cancer patients in the TCGA-PRAD complete set. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; Age: age at diagnosis; T stage: tumour stage; N stage: lymph node status (N0 = without lymph node metastasis; N1 = with lymph node metastasis). HR: hazard ratio of the parameter; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test..
DOI: 10.6084/m9.figshare.30474338.v1
title: Additional file 8 of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file 8: Table S8. Cox regression between our event signature and traditional clinicopathological parameters. (a) Univariate and multivariate Cox regression of the alternative splicing event signature and clinicopathological factors with respect to the biochemical recurrence-free survival of prostate cancer patients in the TCGA-PRAD training set. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; Age: age at diagnosis; T stage: tumour stage; N stage: lymph node status (N0 = without lymph node metastasis; N1 = with lymph node metastasis). HR: hazard ratio of the parameter; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test. (b) Univariate and multivariate Cox regression of the alternative splicing event signature and clinicopathological factors with respect to the biochemical recurrence-free survival of prostate cancer patients in the TCGA-PRAD testing set. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; Age: age at diagnosis; T stage: tumour stage; N stage: lymph node status (N0 = without lymph node metastasis; N1 = with lymph node metastasis). HR: hazard ratio of the parameter; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test. (c) Univariate and multivariate Cox regression of the alternative splicing event signature and clinicopathological factors with respect to the biochemical recurrence-free survival of prostate cancer patients in the TCGA-PRAD complete set. TCGA: The Cancer Genome Atlas; PRAD: prostate adenocarcinoma; Age: age at diagnosis; T stage: tumour stage; N stage: lymph node status (N0 = without lymph node metastasis; N1 = with lymph node metastasis). HR: hazard ratio of the parameter; HR.95L: the lower limit of 95% confidence interval; HR.95H: the upper limit of the 95% confidence interval; p: p-values obtained from the likelihood ratio test..
DOI: 10.6084/m9.figshare.30474344
title: Additional file of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer
DOI: 10.6084/m9.figshare.30474344.v1
title: Additional file of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer

description: Additional file of Comprehensive analysis of alternative splicing across multiple transcriptomic cohorts reveals prognostic signatures in prostate cancer
DOI: 10.6084/m9.figshare.26653011
title: Additional file 3 of Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp.

description: Additional file 3: S1. Mapping statistics. S2. Dual RNA-seq gene counts from Sitophilus oryzae. S3. Dual RNA-seq gene counts from Sodalis pierantonius. S4. Dual RNA-seq DEGs from Sitophilus oryzae. S5. Dual RNA-seq DEGs from Sodalis pierantonius. S6. Dual RNA-seq LRT results from Sitophilus oryzae. S7. Dual RNA-seq LRT results from Sodalis pierantonius. S8. RNA-seq gene counts from symbiotic and aposymbiotic Sitophilus oryzae. S9. RNA-seq DEGs  from symbiotic and aposymbiotic Sitophilus oryzae. S10. Profile of dual RNA-seq superclusters from Sitophilus oryzae. S11. Profile of dual RNA-seq superclusters from Sodalis pierantonius. S12. Profile of RNA-seq superclusters from symbiotic and aposymbiotic Sitophilus oryzae. S13. Dual RNA-seq functional enrichment analysis of supercluster from Sitophilus oryzae. S14: Dual RNA-seq functional enrichment analysis of supercluster from Sodalis pierantonius. S15. RNA-seq functional enrichment analysis of supercluster from symbiotic and aposymbiotic Sitophilus oryzae. S16. List of genes and abbreviations within main text. S17. List of signaling and immunity genes.
DOI: 10.6084/m9.figshare.26653011.v1
title: Additional file 3 of Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp.

description: Additional file 3: S1. Mapping statistics. S2. Dual RNA-seq gene counts from Sitophilus oryzae. S3. Dual RNA-seq gene counts from Sodalis pierantonius. S4. Dual RNA-seq DEGs from Sitophilus oryzae. S5. Dual RNA-seq DEGs from Sodalis pierantonius. S6. Dual RNA-seq LRT results from Sitophilus oryzae. S7. Dual RNA-seq LRT results from Sodalis pierantonius. S8. RNA-seq gene counts from symbiotic and aposymbiotic Sitophilus oryzae. S9. RNA-seq DEGs  from symbiotic and aposymbiotic Sitophilus oryzae. S10. Profile of dual RNA-seq superclusters from Sitophilus oryzae. S11. Profile of dual RNA-seq superclusters from Sodalis pierantonius. S12. Profile of RNA-seq superclusters from symbiotic and aposymbiotic Sitophilus oryzae. S13. Dual RNA-seq functional enrichment analysis of supercluster from Sitophilus oryzae. S14: Dual RNA-seq functional enrichment analysis of supercluster from Sodalis pierantonius. S15. RNA-seq functional enrichment analysis of supercluster from symbiotic and aposymbiotic Sitophilus oryzae. S16. List of genes and abbreviations within main text. S17. List of signaling and immunity genes.
DOI: 10.6084/m9.figshare.30474371
title: Additional file of Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp.

description: Additional file of Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp.
DOI: 10.6084/m9.figshare.30474371.v1
title: Additional file of Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp.

description: Additional file of Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp.
DOI: 10.6084/m9.figshare.30474374
title: Additional file of RETRACTED ARTICLE: Incidental detection of upper gastrointestinal epithelial neoplasia by screening endoscopy prior to endoscopic ultrasonography in patients with pancreaticobiliary disease

description: Additional file of RETRACTED ARTICLE: Incidental detection of upper gastrointestinal epithelial neoplasia by screening endoscopy prior to endoscopic ultrasonography in patients with pancreaticobiliary disease
DOI: 10.6084/m9.figshare.30474374.v1
title: Additional file of RETRACTED ARTICLE: Incidental detection of upper gastrointestinal epithelial neoplasia by screening endoscopy prior to endoscopic ultrasonography in patients with pancreaticobiliary disease

description: Additional file of RETRACTED ARTICLE: Incidental detection of upper gastrointestinal epithelial neoplasia by screening endoscopy prior to endoscopic ultrasonography in patients with pancreaticobiliary disease
DOI: 10.6084/m9.figshare.25045388
title: Additional file 1 of HDAC1/2 control mesothelium/ovarian cancer adhesive interactions impacting on Talin-1-α5β1-integrin-mediated actin cytoskeleton and extracellular matrix protein remodeling

description: Additional file 1.
DOI: 10.6084/m9.figshare.25045388.v2
title: Additional file 1 of HDAC1/2 control mesothelium/ovarian cancer adhesive interactions impacting on Talin-1-α5β1-integrin-mediated actin cytoskeleton and extracellular matrix protein remodeling

description: Additional file 1.
DOI: 10.15468/dl.gkbun8
title: Occurrence Download

description: A dataset containing 31134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "Country is Philippines",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Plantae, Magnoliopsida, Myrtales)"
 ]
}

 The dataset includes 31134 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005968-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sprggn
title: Occurrence Download

description: A dataset containing 1107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((141.52588 36.60645,131.98975 37.5293,126.8042 37.96875,119.94873 36.0791,109.66553 35.37598,101.75537 33.83789,95.07568 28.74023,96.56982 21.97266,103.95264 17.57813,123.11279 20.47852,133.70361 25.88379,141.52588 36.60645))",
 "TaxonKey is Abelia R.Br."
 ]
}

 The dataset includes 1107 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219757-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rsxwkd
title: Occurrence Download

description: A dataset containing 141686 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cervus elaphus Linnaeus, 1758"
 ]
}

 The dataset includes 141686 records from 541 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015156-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0imbxk
title: Occurrence Download

description: A dataset containing 5374 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Dianthus barbatus L."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5374 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012651-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gng9yj
title: Occurrence Download

description: A dataset containing 444 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Callithrix jacchus (Linnaeus, 1758)"
 ]
}

 The dataset includes 444 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219760-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8epcc2
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Amauropelta mosenii (C.Chr.) Salino & T.E.Almeida",
 "TaxonKey is Thelypteris mosenii (C.Chr.) C.F.Reed"
 ]
 }
 ]
}

 The dataset includes 107 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259871-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tcm9z
title: Occurrence Download

description: A dataset containing 75720 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Didelphimorphia"
 ]
}

 The dataset includes 75720 records from 412 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219748-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6k3uf
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrrhura picta subandina Todd, 1917"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0194673-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfdq3i
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The reptiles and amphibians collection (RA) of the Muséum national d'Histoire Naturelle (MNHN - Paris)",
 "TaxonKey is Contomastix lacertoides (Duméril & Bibron, 1839)"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012651-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ymwz38
title: Occurrence Download

description: A dataset containing 356 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dictyurus occidentalis J.Agardh"
 ]
}

 The dataset includes 356 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009209-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hywv63
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anemia costata Sehnem"
 ]
}

 The dataset includes 18 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229120-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9v3ak
title: Occurrence Download

description: A dataset containing 58640 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parietaria judaica L."
 ]
}

 The dataset includes 58640 records from 406 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214088-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qveaj
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Sternula saundersi (Hume, 1877)"
 ]
}

 The dataset includes 124 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006547-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.