cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7466873.v1
title: Supplementary Material for: Optimal Endobronchial Ultrasound Strain Elastography Assessment Strategy: An Explorative Study

description: <b><i>Background:</i></b> In lung cancer staging, mediastinal lymph nodes are currently aspirated using endobronchial ultrasound transbronchial needle aspiration (EBUS-TBNA) based on size and FDG-PET avidity. EBUS strain elastography (SE) is a new technique that may help predict the presence of malignancy. However, a standardized assessment strategy for EBUS-SE measurement is lacking. <b><i>Objectives:</i></b> The aim of this study was to determine the optimal assessment strategy for investigating the predictive value of EBUS-SE in mediastinal lymph nodes. <b><i>Methods:</i></b> Two qualitative visual analogue scale strain scores and two semiquantitative strain elastography measurements (a strain histogram and strain ratio) were acquired in 120 lymph nodes of 63 patients with (suspected) lung cancer. The dataset was randomized into an 80% training dataset to determine cut-off values. Performance was consecutively tested on the remaining 20% and the overall dataset. <b><i>Results:</i></b> The semiquantitative mean histogram scoring strategy with a cut-off value of 78 (range 0–255) showed the best and most reproducible performance in prediction of malignancy with 93% overall sensitivity, 75% specificity, 69% positive predictive value, 95% negative predictive value, and 82% accuracy. Combining the EBUS-SE mean histogram scoring outcome with PET-CT information increased the post-test probability of disease in relevant clinical scenarios, having a positive test likelihood ratio of 4.16 (95% CI 2.98–8.13) and a negative test likelihood ratio of 0.14 (95% CI 0.04–2.81) in suspicious lymph nodes based on FDG-PET or CT imaging. <b><i>Conclusions:</i></b> EBUS-SE can potentially help predict lymph node malignancy in patients with lung cancer. The best semiquantitative assessment method is the mean strain histogram technique.
DOI: 10.6084/m9.figshare.103772.v1
title: Summary of PCR-based molecular genotypes

description: With the exception of svt2 Col R1 M2, where Col and Ler markers and one heterozygous marker were found (svt2 M2 Col-0 rev.1), phenotype matched genotype. That is, a Col-like phenotype correlated with the presence of Col polymorphisms, while a Ler-like phenotype correlated with Ler polymorphisms. C, L, and H refer to Col, Ler, or heterozygous, respectively
DOI: 10.6084/m9.figshare.23957937.v1
title: PHE-SICH-CT-IDS

description: This publicly available dataset namely PHE-SICH-CT-IDS, which is constructed 120 CT scans of patients with SICH. PHE-SICH-CT-IDS contains 3,511 CT images of SICH occurring in the basal ganglia region, with associated labels for the surrounding edematous zone around the hematoma. Additionally, PHE-SICH-CT-IDS provides SICH detection labels for the edematous zone and radiomic features of the edematous zone, which are valuable for clinical research and diagnosis.
DOI: 10.6084/m9.figshare.7144112.v2
title: Edaphic factors and initial conditions influence successional trajectories of early regenerating tropical dry forests

description: Files 1-4 is the data used for Linear Mixed Effects models.<br>File 5. TSC1 = Saplings (1cm&gt;DBH&lt;5cm); TSC5 = Trees (DBH&gt;5cm); LSC1 = Small lianas (1cm&gt;DBH&lt;3cm); LSC3 = Large lianas (DBH&lt;3cm). <br>Files 6-9 is the results of the NMDSs per life form and size class to then plot changes of composition over time.
DOI: 10.17632/5p7fxjt7vs
title: Data for: Deep Learning Approach to Skin Layers Segmentation in Inflammatory Dermatoses

description: The dataset consists of 380 High Frequency Ultrasound (HFUS) images of 380 different patients with AD (303) and psoriasis (77). The data were acquired using DUB SkinScanner75 with a 75 MHz transducer yielding images of size 2067x1555 pix and of four different resolutions (lateral x axial): {0.0019x0.085, 0.0024x0.085, 0.0031x0.085, 0.0019x0.085} mm/pix. For each image, the entry echo - epidermis and SLEB layer delineated by an expert are provided. The data set includes the neural network models trained to segment the layers. The details concerning the models are given in reference paper: https://doi.org/10.1016/j.ultras.2021.106412
DOI: 10.6084/m9.figshare.20342670.v1
title: Research Date.sav

description: With the increasing popularity of Internet devices, the rate of Internet addiction, particularly among adolescents, is rising dramatically. IA causes adolescents to short-sightedness, resulting in a dramatic increase in delayed discounting. However, the effects and potential mechanisms of IA on adolescent delay discounting remain largely unknown. To our knowledge, this is the first study to examine the relationship between IA and delay discounting in Chinese adolescents. The sample comprised 2245 adolescents (49.70% male; <em>M(SD)age</em> = 14.86(2.18) years) completed questionnaires anonymously regarding IA, delayed discounting, time perception, and future self-continuity (FSC). The results indicated that: (a) IA showed a positive association with adolescent delay discounting. (b) time perception mediated the association between IA and delay discounting, and the mediating effect was smaller for older adolescents compared to younger adolescents. (c) FSC only moderates the relationship between IA and delay discounting in older adolescents. Specifically, the relationship between IA and delay discounting was weaker in older adolescents with higher levels of FSC. These findings show that IA distorts adolescents' perceptions of future time, which affects delay discounting. We need to use more targeted intervention strategies to prevent and mitigate the effects of IA on delay discounting in adolescents of various ages.
DOI: 10.6084/m9.figshare.25674810.v1
title: Floating Solar Greenhouse Gas Data - Cornell Experimental Ponds 2022 and 2023

description: This dataset accompanies the manuscript:"Short-term effect of floating solar energy production on pond greenhouse gas dynamics"Published in Environmental Science & Technology.
DOI: 10.17632/9263pg2sfw
title: Replication Files for "Trade Networks and Firm Value: Evidence from the U.S.-China Trade War"

description: Replication Files for the paper "Trade Networks and Firm Value: Evidence from the U.S.-China Trade War" by Yi Huang, Chen Lin, Sibo Liu, and Heiwai Tang.
DOI: 10.17632/vd9d6bjcm7
title: Valley-Filling based Heuristics for Eletric Vehicle Power Charging Allocattion

description: Files used for the research "Valley-Filling based Heuristics for Electric Vehicle Power Charging Allocation"

Contents of this repository:

1) Datasets:
-- Set of data used to carry out the work.
---- Dataset of electricity grid consumption in the city of Tetouan (Morocco) [original data available at: https://archive.ics.uci.edu/dataset/849/power+consumption+of+tetouan+city ]
---- Electric vehicle charging dataset for the city of Boulder (Colorado/USA) [original data available at: https://open-data.bouldercolorado.gov/datasets/39288b03f8d54b39848a2df9f1c5fca2_0/explore]

2) Heuristics:
- Versions of the algorithms used in each of the scenarios presented.
---- Classic Valley-Filling (CVF);
---- Optimistic Valley-Filling (OVF);
---- Load Conservation Valley-Filling (LCVF).
DOI: 10.6084/m9.figshare.19345079.v1
title: Social capital data.xlsx

description: peer pressure and social capital on joint consumption
DOI: 10.6084/m9.figshare.26840833.v1
title: R script to generate nine quadrant plot for integrating transcriptomics and proteomics data

description: It is a single script to generate nine quadrant plot that integrate RNA-seq and LC-MS data and further generate quadrants with the commonly expressed genes/proteins in both datasets. This script can be used for integrating two omics approaches such as transcriptomics and proteomics to find cordiality in the expression of gene and translation of its encoded protein.
DOI: 10.6084/m9.figshare.7832012.v1
title: Genome - Capsaspora owczarzaki's (v4)

description: Seitaro Denbo, Katsutoshi Aono, Takaaki Kai, Rei Yagasaki, <b>Iñaki Ruiz-Trillo</b>, Hiroshi Suga. Revision of the Capsaspora genome using read mating information adjusts the view on premetazoan genome.Develop. Growth Differ. 2019;61:34–42.<br><br> <i></i>
DOI: 10.17632/hbn62fgss3
title: Dataset: Behavioural response of southern right whales (Eubalaena australis) to whale watching in south-west Western Australia.

description: We examined the behavioural responses of southern right whale (Eubalaena australis) encounters to whale watching vessels in King George Sound, Western Australia over three observation periods (before, during and after vessel encounters), providing the first assessment of southern right whale short-term responses to whale watching activities off the coast of Australia. Based on observations of 82 whales across 46 focal groups, we found that although whale behaviours did not differ significantly among the three observation periods, whales did exhibit some behavioural differences associated with the type and/or number of vessels that interacted with them. The activity that southern right whales were engaged in at the time of a whale watching encounter influenced variation in their behavioural response to these vessels. Our findings suggest that compliance with current Western Australian whale watching guidelines by commercial operators and recreational boat owners is providing adequate protection for southern right whales that utilise King George Sound.
DOI: 10.17632/t9dtg26y4y
title: AMRTO Automated CAD model reconstruction of topology optimization result

description: AMRTO Automated CAD model reconstruction of topology optimization result
DOI: 10.6084/m9.figshare.12937079.v2
title: Ningxin-I Large Yellow Croaker SNP Array Raw Data and Scripts

description: Ningxin-I Large Yellow Croaker SNP Array Raw Data and Scripts
DOI: 10.6084/m9.figshare.1365540.v1
title: Aquatic macroinvertebrate count data by site for the Milltown Lake Catchment, Co. Monaghan, Ireland.

description: These data are macroinvertebrate count values for 26 sites on the Milltown Lake Catchment, Co. Monaghan, Ireland. Macroinvertebrates were identified to the level required by the Irish Environmental Protection Agency's Biotic Index Score (Q value). Count data are from 3 separate sampling events; May 2006, September 2006 and May 2007. Further information on sampling and processing methodologies, site descriptions and locations are available in the file, 'A Water Quality Assessment of Milltown Lake (Muckno Mill) Catchment, Co. Monaghan using Macrophyte and Macroinvertebrate Biological Indicators'.
DOI: 10.17632/wm3nwkrd4m
title: Microprobe data (mineral chemistry) - Samples SP308b, SP319, SP329, SP332 (Massa Unit, Apuan Alps, Italy)

description: Excel spreadsheets containing the mineral analyses carried out through electron microprobe on samples of metapelites.

Sample labels:
-SP308b
-SP319
-SP329
-SP332

Details of the analytical conditions and samples are available in the associated manuscript (submitted to the Journal of Metamorphic Geology)
DOI: 10.6084/m9.figshare.12611732.v1
title: JVASP-74963 to JVASP-79608

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.16890541.v1
title: Dataset: Reaney et al. Information about foot care provided to people with diabetes with or without their partners

description: Dataset from Reaney et al. Information about foot care provided to people with diabetes with or without their partners: Impact on recommended foot care behavior.
DOI: 10.6084/m9.figshare.24233629.v21
title: <b>Unlocking Optimal ORM Database Designs: Accelerated Tradeoff Analysis with Transformers</b>

description: Optimizing object-relational database mapping (ORM) design is essential for software system performance. However, current ORM design tools widely used in practice offer limited support for evaluating performance implications. State-of-the-art relying on systematic tradeoff analysis provides greater assistance but becomes impractical for large-scale, real-world systems. In this paper, we introduce an innovative solution grounded in machine learning to efficiently and scalably identify optimal ORM database tradeoffs.Our approach involves training a transformer model using a dataset of formally analyzed object-relational database designs to identify Pareto-optimal design tradeoffs, significantly reducing the number of design candidates. The extensive experiments across various software database systems demonstrate the high effectiveness of the approach in identifying optimal design alternatives overlooked by leading ORM tools. Additionally, our results show a remarkable 98.21 % improvement in analysis efficiency compared to the current state-of-the-art, reducing tradeoff analysis time from over 15 days to around 18 minutes on average.<br><br>
DOI: 10.17632/7h88r9byb4
title: Impact of range of motion on post activation performance enhancement

description: database
DOI: 10.17632/dyxvdcydkz
title: Coulomb functions for complex energies

description: Title of program: COULOM Catalogue Id: ABOC_v1_0 Nature of problem Subroutine COULOM is a Fortran IV subroutine to calculate the regular and irregular Coulomb functions and their derivatives for a complex energy E. This subroutine can be called with the following three quantities ... CORRECTION SUMMARY: Vol:Year:Page 3:1972:276 "000A CORRECTION 18/03/72" "Coulomb functions for complex energies. (C.P.C. 1(1969)25)." T. Tamura; F. Rybicki Note: correction instructions are contained in source code Versions of this program held in the CPC repository in Mendeley Data ABOC_v1_0; COULOM; 10.1016/0010-4655(69)90015-0 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/w496dkygx8
title: EnduroBone: A 3D printed Bioreactor for Extended Bone Tissue Culture

description: Studies of the effects of external stimuli on bone tissue, disease transmission mechanisms, and potential medication discoveries benefit from long-term tissue viability ex vivo. By simulating the in-vivo environment, bioreactors are essential for studying bone cellular activity throughout biological processes. We present the development of an automated 3D-printed bioreactor EnduroBone designed to sustain the ex-vivo viability of 10 mm diameter cancellous bone cores for an extended period. The device is supplied with two critical parameters for maintaining bone tissue viability: closed-loop continuous flow perfusion of 1mL/min for nutrient diffusion and waste removal and direct mechanical stimulation with cyclic compression at 13.2 RPM (revolutions per minute) to promote cell viability which can lead to improved tissue stability during ex vivo culturing. The bioreactor addresses several limitations of existing systems and provides a versatile open-source platform for bone cancer research, orthopedic device testing, and other related applications. To validate the bioreactor, fresh swine samples were cultured ex-vivo, and their cell viability was determined to be maintained for up to 28 days. Periodic cell viability assessment through live/dead cell staining and confocal imaging at the start (0 days) and at several time points throughout the culture period (7, 14, 21, and 28 days) was used to demonstrate EnduroBone effectiveness in sustaining bone cell health for the extended period tested.
DOI: 10.17632/xffyybvw4j
title: Code and Data from "The Social Signal"

description: This project includes the data and code disclosure for "The Social Signal," by J. Anthony Cookson, Runjing Lu, Marina Niessner and William Mullins. As this project is based on a set of proprietary databases from social media and databases that require subscriptions to access, we have created stand-in datasets without disclosing the underlying files so that users of this package can run our code. The README file contains more information on the directory structure, which identifies the data sources as well as which data are proprietary.
DOI: 10.6084/m9.figshare.12580328.v3
title: COVID-19 Chest X-Ray Image Repository

description: Dataset of publicly available images from COVID-19 positive patients collected from several sources over the net. All images are chest x-rays from frontal view (AP or PA). There is a <b>ZIP </b>file containing <b>900 </b>images and a metadata in CSV format which includes information about 452 images.<br>Note that some of the images are from pediatrics and/or from early-stage patients with no specific image findings noted by the radiologist; but all of them are from COVID-positive cases. Related guideline and details are available in the GitHub repo.
DOI: 10.6084/m9.figshare.15145503.v1
title: Appendix 1 Biogeobears results

description: Biogeobears results
DOI: 10.6084/m9.figshare.22640893.v1
title: Dataset S1. Phylogenetic tree

description: Newick file for the phylogenetic tree constructed with FastTreeMP using 16S rRNA gene sequences obtained from buffelgrass microbiome samples.
DOI: 10.6084/m9.figshare.22852355.v1
title: Vane, Cobain & Larsen: Carbon stable isotope analysis of amino acids review. Compilation Metadata

description: Metadata spreadsheets pertaining to the data compilations as part of the Vane, Cobain, and Larsen review: <strong>The power and pitfalls of amino acid carbon stable isotopes for tracing the use and fate of basal resources in food webs</strong> <strong>Abstract:</strong> Natural and anthropogenic stressors are spatiotemporally complex, having indirect effects on the composition and biomass of organisms at the base of a food web, and their availability and nutritional quality. Because basal organisms synthesise the biomolecules essential for metazoan growth and survival (i.e. basal resources), understanding the connections between basal resources and consumers across diverse time scales is needed to fully comprehend their impact on food webs. Traditional approaches using bulk stable isotope ratios have provided insight into basal resource use, but lack specificity in identifying multiple basal resources and their transfer through ecosystems. The development of compound-specific stable isotope analyses now allows researchers to trace the trophic transfer of specific biomolecules. This paper provides an overview of the advances and challenges associated with tracing basal resources with carbon stable isotopes in amino acids (δ13C-AA). We develop a conceptual framework for understanding the mechanistic underpinning of δ13C-AA values. Subsequently, formal definitions of associated terminologies that have so far been lacking in the literature are proposed. We empirically highlight the diagnostic ability of the relative offsets between δ13C values of essential amino acids, termed δ13C-EAA patterns. As these offsets remain largely unaltered during trophic transfer and across varying environments, they can be used as fingerprints to trace spatiotemporal shifts in basal resource use within food webs. Given the stable preservation of amino acids in many metazoan tissues, δ13C-EAA fingerprints can provide insights into basal resource use in food webs from geological history through to the contemporary. The added value of non-essential amino acids as metabolic biomarkers are explored and demonstrated in an archaeological context. We provide thorough overviews of the analytical and statistical methodologies involved in making robust inferences in food web studies. The constraints and pitfalls of δ13C-AA data are discussed, such as issues with basal resource specificity, de novo synthesis, and problems with large compilation datasets. Taken together, δ13C-AA values provide a powerful tool for understanding the specific use of basal resources in food webs on various spatiotemporal scales, but careful consideration and characterization of basal resources is necessary to ensure accurate estimations of proportional use.
DOI: 10.6084/m9.figshare.23812122.v1
title: Xiao et al. functional training on FMS

description: agility, endurance, speed, flexibility, injury risk, adolescent
DOI: 10.17632/bmy35m25pw
title: Dataset for the Detection of Helmet Use in Motorcycle Drivers

description: Compilation of 32 videos of motorcycle drivers, where each one participate in two videos, one wearing full or modular type protective helmets and other without helmet. The objective of the collection is to serve as input data to train and test machine learning models that improve motorcycle safety from a driver perspective. This dataset was collected at the Laboratory of Interactive Technologies and User Experience (LITUX) of the Autonomous University of Zacatecas, México, in an open but safe environment for the driver, the camera position was selected in a place where it would not interfere with the dashboard data or vision of the road.
DOI: 10.17632/hwb9rn9w9h
title: SCARED-C

description: The dataset SCARED-C is introduced in the context of assessing robustness in endoscopic depth prediction models. It is part of the EndoDepth benchmark, which is designed to evaluate the performance of monocular depth prediction models specifically for endoscopic scenarios. The dataset features 16 different types of image corruptions, each with five levels of severity, encompassing challenges like lens distortion, resolution alterations, specular reflection, and color changes that are typical in endoscopic imaging. The ground truth is on the original testing set of SCARED. 
The purpose of SCARED-C is to test the robustness of depth estimation models by exposing them to various common endoscopic corruptions. This dataset is a valuable tool for developing and evaluating depth prediction algorithms that can handle the unique challenges presented by endoscopic procedures, ensuring more accurate and reliable outcomes in medical imaging.
DOI: 10.6084/m9.figshare.12775865.v2
title: The Experimental Evidences for O2 and CO Generation on Mars by CO2 Discharge

description: The data of the figures in this submitted paper.
DOI: 10.6084/m9.figshare.20024285.v1
title: Fig.4 and Fig.6 (qRT-PCR).xlsx

description: qRT-PCR was performed to analyze the relative expression of four candidate genes related to p38 MAPK signaling pathway. (A) NGF, (B) DDIT3, (C) GADD45A, and (D) FGF2. (n = 3 samples per group, *P &lt; 0.05, **P&lt;0.01, and ***P&lt;0.001. ****P&lt;0.0001).
DOI: 10.6084/m9.figshare.22678177.v1
title: Metagenome sequencing and 103 microbial genomes from ballast water and sediments

description: The great threaten of microbes carried by ballast water calls for figuring out the species composition of the ballast-tank microbial community, where the dark, cold, and anoxic tank environment might select special taxa. In this study, we reconstructed 103 metagenome-assembled genomes (MAGs), including 102 bacteria and one archaea from four vessels of international voyages. Of these MAGs, 60 were ‘near complete’ (completeness &gt;90%), 34 were &gt;80% completeness, and nine were &gt;75% completeness. Phylogenomic analysis revealed that over 70% (n = 74) of these MAGs represented new taxa at different taxonomical levels, including one order, three families, 12 genera and 58 species. Species composition of these MAGs were most consistent with the previous reports, with the most abundant phyla were Proteobacteria (n = 69), Bacteroidota (n = 17), and Actinobacteria (n = 7). These draft genomes provided novel data of species diversity and function in ballast-tank microbial community, which will facilitate ballast water and sediments management.