cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13141840
title: Research Data - Magnetic Field Controlled Surface Localization of Spin-Wave Ferromagnetic Resonance Modes in 3D Nanostructures

description: Source data from micromagnetic simulations performed in COMSOL Multiphysics software and Python codes for data post-processing utilized in the paper "Magnetic Field Controlled Surface Localization of Spin-Wave Ferromagnetic Resonance Modes in 3D Nanostructures."

The files from Comsol (.mph) are without simulation solutions due to their large size - please contact me if needed.
DOI: 10.6084/m9.figshare.26413717
title: Testing artifact

description: Testing
DOI: 10.6084/m9.figshare.26413717.v1
title: Testing artifact

description: Testing
DOI: 10.15468/dl.xx6ndk
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Malacopsyllidae"
 ]
}

 The dataset includes 59 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043485-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jah7th
title: Occurrence Download

description: A dataset containing 36209 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pulicidae"
 ]
}

 The dataset includes 36209 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043486-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgvgk4
title: Occurrence Download

description: A dataset containing 909 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((104.96321 -6.64585,104.96297 -7.09545,107.34269 -8.05854,109.73922 -8.21532,113.25561 -8.75286,114.65544 -8.95443,114.72848 -8.69521,114.5269 -8.31445,114.5829 -8.00089,114.5493 -7.32897,112.95909 -7.22818,112.74631 -7.0266,112.58953 -6.65704,106.63182 -5.3468,105.9823 -5.77235,105.67993 -6.08591,104.96321 -6.64585))",
 "OccurrenceStatus is Present",
 "TaxonKey is Orthetrum sabina (Drury, 1773)"
 ]
}

 The dataset includes 909 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043487-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ps5b9n
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chinese Taipei",
 "GadmGid is TWN.7_1",
 "TaxonKey is Opiliones"
 ]
}

 The dataset includes 51 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043488-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9075160
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.15468/dl.hrg2p9
title: Occurrence Download

description: A dataset containing 295 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((104.96321 -6.64585,104.96297 -7.09545,107.34269 -8.05854,109.73922 -8.21532,113.25561 -8.75286,114.65544 -8.95443,114.72848 -8.69521,114.5269 -8.31445,114.5829 -8.00089,114.5493 -7.32897,112.95909 -7.22818,112.74631 -7.0266,112.58953 -6.65704,106.63182 -5.3468,105.9823 -5.77235,105.67993 -6.08591,104.96321 -6.64585))",
 "OccurrenceStatus is Present",
 "TaxonKey is Heliocypha fenestrata (Burmeister, 1839)"
 ]
}

 The dataset includes 295 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043489-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86wezh
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "Locality is one of (sabana de torres, santander, sabana de torres road, sabana de torres, reserva cabildo verde, sabana de torres, sabana de torres, después de la desviación, km. 17, sabana de torres, charca en borde de carretera, sabana de torres, electrificadora, sabana de torres, finca carretera. sobre junco en pantano, sabana de torres, reserva cabildo verde. en bambu., sabana de torres, reserva cabildo verde. en charco, sabana de torres, borde de carretera, sabana de torres, en borde de carretera, sabana de torres, finca carretera., sabana de torres, finca carretera. en un charco, sabana de torres, reserva cabildo verde (2), sabana de torres, aguas claras, sabana de torres, finca carretera. en el borde de, sabana de torres, finca carretera. en el borde de un charco, sabana de torres, finca carretera. sobre junco en, sabana de torres, reserva cabildo verde. a 3m del, sabana de torres, reserva cabildo verde. a 3m del suelo, sabana de torres, reserva cabildo verde. en un arbol a 1.8 m de altura, sabana de torres, reserva cabildo verde. sin foto, sabana de torres, vereda palonegro)"
 ]
}

 The dataset includes 186 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043490-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10582093
title: A supervised Graph-based deep learning algorithm to detect and quantify clustered particles

description: In this data repository, we provide the necessary data for replicating results, including both simulated and biological datasets. Additionally, the repository includes trained models to infer from these datasets.
description: Considerable efforts are currently being devoted to characterizing the topography of membrane-embedded proteins using combinations of biophysical and numerical analytical approaches. In the paper, we present an end-to-end (i.e., human intervention-independent) algorithm consisting of two concatenated binary Graph Neural Network (GNNs) classifiers with the aim of detecting and quantifying dynamic clustering of particles. As the algorithm only needs simulated data to train the GNNs, it is parameter-independent. The GNN-based algorithm is first tested on datasets based on simulated albeit biologically realistic data and validated on actual fluorescence microscopy experimental data. Application of GNN analysis is shown to be faster than existing DBSCAN-based approaches, with the additional advantage that the GNN-based method can be implemented on standard desktop computers. Furthermore, GNN models obtained via training procedures are reusable. To the best of our knowledge, this is the first application of GNN-based approaches to the analysis of particle aggregation, with potential applications to the study of nanoscopic particles like the nanoclusters of membrane-associated proteins in live cells.
description: Simulated Datasets.zip: This file includes simulated datasets in both .csv and their corresponding .txt files, providing comprehensive information about their simulation, such as the number of particles. The parameters used for these simulations are shown in Supplementary Table 1 of the paper.

Inference Datasets.zip: This file includes both STORM and TIRF datasets utilized for testing the Graph Neural Networks (GNNs) presented in the paper.

Trained models.zip: This file includes GNN1 and GNN2 models utilized in the paper. These pre-trained models can be employed for retraining or inference purposes.


In this GitHub repository, we provide scripts to show how GNNs are used to infer clustering processes from SMLM datasets.
description: Acknowledgements

Thanks are due to Eng. Hector Buena-Maizón for useful comments on the simulation procedure used in this work. Research work quoted in this review has been supported by multiple grants from the National Scientific and Technology Research Council of Argentina (CONICET) and grant PICT BID-CONICET  2015-2654 the Ministry of Science, Technology and Innovative Production of Argentina (Mincyt). Simulations were carried out using a Titan V GPU kindly donated by NVIDIA Corp. to Francisco J. Barrantes.
DOI: 10.15468/dl.d72vub
title: Occurrence Download

description: A dataset containing 1192109631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "Year 2019-2023"
 ]
}

 The dataset includes 1192109631 records from 25682 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043332-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v54pvf
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchomys isarogensis Musser & Freeman, 1981"
 ]
}

 The dataset includes 48 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004041-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zd9z68
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hystrix pumila (Günther, 1879)"
 ]
}

 The dataset includes 35 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004044-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.797vew
title: Occurrence Download

description: A dataset containing 487 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magnolia campbellii Hook.f. & Thomson"
 ]
}

 The dataset includes 487 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004043-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wupj6
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "Geometry POLYGON((-73.61454 6.6232,-73.84402 6.25267,-73.58191 6.08003,-73.20927 6.48425,-73.61454 6.6232))",
 "OccurrenceStatus is Present",
 "TaxonKey is Leptodactylus colombiensis Heyer, 1994"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004045-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azcc9q
title: Occurrence Download

description: A dataset containing 16632 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Museo Argentino de Ciencias Naturales \"Bernardino Rivadavia\" (MACN). Cryptogamic National Collection (BAc)"
 ]
}

 The dataset includes 16632 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004042-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/863fcf1bf21e4ff9
title: Custom collection of categorize data from RV Polarstern between 1 Jan and 30 Sep 2020
DOI: 10.60656/bf7e814eb18a43f2
title: Custom collection of classification data from RV Polarstern between 1 Jan and 30 Sep 2020
DOI: 10.15468/dl.g884gz
title: Occurrence Download

description: A dataset containing 3480 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magnolia champaca (L.) Baill. ex Pierre"
 ]
}

 The dataset includes 3480 records from 224 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004046-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7juy5x
title: Occurrence Download

description: A dataset containing 298 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magnolia chapensis (Dandy) Sima"
 ]
}

 The dataset includes 298 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004047-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xx3ues
title: Occurrence Download

description: A dataset containing 596 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registros de ocurrencia de Citronella mucronata entre las regiones de Coquimbo y La Araucanía, Chile"
 ]
}

 The dataset includes 596 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004048-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14473/csda/9odt3k
title: „Důvěra a dostupnost zdravotnického systému“ v rámci projektu SYRI PA6 Efektivita zdravotního systému 2

description: Výzkum provedl výzkumný tým CVVM Sociologického ústavu AV ČR, v.v.i., v rámci výzkumu „Naše společnost 2024". Sběr dat provedla tazatelská síť CVVM.
description: DATA A INFORMACE K TOMUTO VÝZKUMU JSOU ZATÍM PŘÍSTUPNÁ POUZE PRO VÝZKUMNÍKY PROJEKTU SYRI. PO UKONČENÍ TOHOTO PROJEKTU (KONEC ROKU 2025) BUDOU DATA A VŠECHNY DALŠÍ DOKUMENTY ZVEŘEJNĚNY PRO OSTATNÍ UŽIVATELE DATOVÉHO ARCHIVU.
description: Naše společnost
DOI: 10.15468/dl.988nhr
title: Occurrence Download

description: A dataset containing 16632 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Museo Argentino de Ciencias Naturales \"Bernardino Rivadavia\" (MACN). Cryptogamic National Collection (BAc)"
 ]
}

 The dataset includes 16632 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004049-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ujfw9
title: Occurrence Download

description: A dataset containing 21189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "Geometry POLYGON((0.71886 48.57250,4.23603 48.57250,4.23603 49.97875,0.71886 49.97875,0.71886 48.57250))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Corvus monedula Linnaeus, 1758"
 ]
}

 The dataset includes 21189 records from 578 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004050-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5yvh5k
title: Occurrence Download

description: A dataset containing 446 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magnolia cylindrica E.H.Wilson"
 ]
}

 The dataset includes 446 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004051-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23nsk7
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "Geometry POLYGON((-73.67901 6.69489,-74.12048 6.25341,-74.02643 6.01732,-73.84792 5.8964,-73.54656 5.89448,-73.38533 6.06723,-73.26249 6.55669,-73.67901 6.69489))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leptodactylus fragilis (Brocchi, 1877)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004053-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28303565
title: FoRTE-SEM-Benchmark

description: Data and preliminary modeling output for SEM-Benchmark study.
DOI: 10.6084/m9.figshare.28303565.v1
title: FoRTE-SEM-Benchmark

description: Data and preliminary modeling output for SEM-Benchmark study.
DOI: 10.15468/dl.n9nxm5
title: Occurrence Download

description: A dataset containing 2672 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scincella cherriei (Cope, 1893)"
 ]
}

 The dataset includes 2672 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004052-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tddw45
title: Occurrence Download

description: A dataset containing 419 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magnolia delavayi Franch."
 ]
}

 The dataset includes 419 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004054-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/8nsq-5a83
title: Trust and opinion information in intuitionistic fuzzy environments

description: A high-efficiency energy storage battery technology development project was officially launched, attracting seven experts from different institutions to participate and form a high-efficiency energy storage battery R&D collaboration network. Based on the participants' previous project collaboration experience, three overlapping subgroups naturally formed in the network. After the research and development are completed, the nine members must jointly evaluate the most suitable TT path for the energy storage battery technology.
DOI: 10.15468/dl.rfu63z
title: Occurrence Download

description: A dataset containing 1748 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magnolia denudata Desr."
 ]
}

 The dataset includes 1748 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004056-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ykscu
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-65.37113 -25.00566,-64.4576 -24.99774,-64.45363 -24.4409,-65.37113 -24.43693,-65.37113 -25.00566))",
 "TaxonKey is Atlapetes citrinellus (Cabanis, 1883)"
 ]
}

 The dataset includes 25 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004055-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26km5f
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "Geometry POLYGON((-73.67296 6.37737,-73.94246 6.28987,-74.02646 6.01337,-73.67646 5.82612,-73.26696 5.82962,-73.15321 6.09037,-73.29671 6.31962,-73.67296 6.37737))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pristimantis acutirostris (Lynch, 1984)"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004057-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14764730
title: Data From: Urban planning for wildlife connectivity, a multispecies assessment of urban sprawl and SLOSS renaturalization strategies

description: Data use for the analytical process in manuscript "Urban planning for wildlife connectivity, a multispecies assessment of urban sprawl and SLOSS renaturalization strategies" Journal of Applied Ecology, 2025

File: roadkill_Toronto_GElmi_Cadusso_JAPP_manuscript.zip

Description: Roadkill data used for the validation of the Toronto connectivity map. Data includes both city of Toronto road kill data, through the Toronto Wildlife Centre and queried and sorted inaturalist datapoints whereby keywords dead or roadkill where found, for all mammals, amphibians and reptiles.

File: input.zip

Description: Compressed folder contains all input maps for all taxa and all scenario sorted in folder hieracy taxa > scenario > maps. Resistance maps are distinguished between those destined for graphab maps, identified as _graphab, and those destined for omniscape,

Access information

Other publicly accessible locations of the data:



None


Data was derived from the following sources:



inaturalist, city of Toronto, Toronto Wildlife Centre, Toronto Region Conservation Authority


 

For Methods refer to source manuscript.
DOI: 10.5281/zenodo.14764731
title: Data From: Urban planning for wildlife connectivity, a multispecies assessment of urban sprawl and SLOSS renaturalization strategies

description: Data use for the analytical process in manuscript "Urban planning for wildlife connectivity, a multispecies assessment of urban sprawl and SLOSS renaturalization strategies" Journal of Applied Ecology, 2025

File: roadkill_Toronto_GElmi_Cadusso_JAPP_manuscript.zip

Description: Roadkill data used for the validation of the Toronto connectivity map. Data includes both city of Toronto road kill data, through the Toronto Wildlife Centre and queried and sorted inaturalist datapoints whereby keywords dead or roadkill where found, for all mammals, amphibians and reptiles.

File: input.zip

Description: Compressed folder contains all input maps for all taxa and all scenario sorted in folder hieracy taxa > scenario > maps. Resistance maps are distinguished between those destined for graphab maps, identified as _graphab, and those destined for omniscape,

Access information

Other publicly accessible locations of the data:



None


Data was derived from the following sources:



inaturalist, city of Toronto, Toronto Wildlife Centre, Toronto Region Conservation Authority


 

For Methods refer to source manuscript.
DOI: 10.60635/c3k59b
title: Bocas del Toro, Platform Tower_Water Temperature

description: Water Temperature, Interval average
 Bocas del Toro Research Station, Marine platform tower
 Location: 9.351553°, -82.256565°
 Sensors located on a platform located approximately 60m from the end of the station’s dock. Platform includes meteorological tower, Sea Surface Temperature probe and several sea level sensors. The current platform was built in 2012 to replace the original platform built in 2002.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Bocas_del_Toro_Platform_Tower_Water_Temperature/10042574