cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rqca3b
title: Occurrence Download

description: A dataset containing 1479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heniochus diphreutes Jordan, 1903",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1479 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054689-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.82xfkp
title: Occurrence Download

description: A dataset containing 2372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "TaxonKey is Braunsapis Michener, 1969"
 ]
}

 The dataset includes 2372 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054690-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5sj1b33g
title: MassIVE MSV000095545 - Smad7-based biologic targeting epidermis and stroma promotes healing of diabetic wounds in mice and pigs
title: Impaired healing of diabetic wounds causes significant morbidity and mortality. This study aimed to identify novel mechanisms of diabetic wound healing defects and test a therapeutic intervention using diabetic mouse and pig models. We found Smad7 transgene expression in mouse epidermis promoting wound healing in diabetic dbdb mice, with reductions in obesity and blood glucose. To isolate effects of Smad7 on wounds, we created a Smad7-based biologic (Tat-PYC-Smad7) that penetrates wound cells. Topical application of Tat-PYC-Smad7 to diabetic pig and mouse wounds accelerated healing compared to controls. RNAseq analysis of mouse wound samples showed reduced TGF/NFB signaling, leading to faster re-epithelialization and better extracellular matrix remodeling. Tat-PYC-Smad7 also attenuated neutrophil degranulation and NETosis by blocking histone 3 citrullination and inhibiting myeloperoxidase activities. Our study reveals that Tat-PYC-Smad7 promotes diabetic wound healing by targeting keratinocytes and neutrophils, providing insight into cellular mechanisms of diabetic wound healing defects targetable by Smad7-based therapy.
DOI: 10.15468/dl.q98hgv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.912985 -36.452096, 148.912985 -36.454341, 148.919723 -36.454341, 148.919723 -36.452096, 148.912985 -36.452096))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054692-240626123714530/datasets/export for details.
DOI: 10.15468/dl.v9zahk
title: Occurrence Download

description: A dataset containing 1086 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herklotsichthys quadrimaculatus (Rüppell, 1837)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1086 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054691-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbjq8d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.749042 -36.454341, 148.749042 -36.456587, 148.751288 -36.456587, 148.751288 -36.454341, 148.749042 -36.454341))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054693-240626123714530/datasets/export for details.
DOI: 10.15468/dl.3j5eeb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.067945 -36.452096, 149.067945 -36.454341, 149.063454 -36.454341, 149.063454 -36.461079, 149.065699 -36.461079, 149.065699 -36.456587, 149.072437 -36.456587, 149.072437 -36.461079, 149.074683 -36.461079, 149.074683 -36.458833, 149.079174 -36.458833, 149.079174 -36.454341, 149.072437 -36.454341, 149.072437 -36.452096, 149.067945 -36.452096))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054695-240626123714530/datasets/export for details.
DOI: 10.15468/dl.e388s2
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.697388 -36.461079, 148.697388 -36.470062, 148.704126 -36.470062, 148.704126 -36.467816, 148.719846 -36.467816, 148.719846 -36.470062, 148.726584 -36.470062, 148.726584 -36.463324, 148.72883 -36.463324, 148.72883 -36.461079, 148.697388 -36.461079))"
 ]
}

 The dataset includes 25 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054696-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m9bd8c
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ageratina chimalapana B.L.Turner"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054697-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17894/ucph.ae40a3f7-cf34-44e3-98ee-cf780fd11ea2
title: Deterministic photon source of genuine three-qubit entanglement
DOI: 10.5281/zenodo.13241409
title: DDLS Course 2024

description: Data for the 2024 DDLS course
DOI: 10.5281/zenodo.13228015
title: DDLS Course 2024

description: Data for the 2024 DDLS course
DOI: 10.5281/zenodo.13228016
title: DDLS Course 2024

description: Data for the 2024 DDLS course
DOI: 10.5281/zenodo.13241165
title: DDLS Course 2024

description: Data for the 2024 DDLS course
DOI: 10.5281/zenodo.13241857
title: DDLS Course 2024

description: Data for the 2024 DDLS course
DOI: 10.5281/zenodo.13257138
title: DDLS Course 2024

description: Data for the 2024 DDLS course
DOI: 10.5281/zenodo.13259507
title: DDLS Course 2024

description: Data for the 2024 DDLS course
DOI: 10.15468/dl.m4k9y5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.802941 -36.461079, 148.802941 -36.467816, 148.809678 -36.467816, 148.809678 -36.463324, 148.805187 -36.463324, 148.805187 -36.461079, 148.802941 -36.461079))"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054698-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11479852
title: Molecular dynamics trajectories and portable binary run files for the self-assembly of heparin and amyloid-β(16-22) with the ProMPT forcefield

description: About this repository

Self-assembly simulations of heparin and amyloid-β(16-22) were performed at various numbers of peptides (N_pep), number of heparin molecules (N_hep), degrees of polymerization of heparin (hep_dp) and rigidity factors (rig_f) for heparin. This repository contains one folder per system, characterized by a combination of four system variables: N_pep, N_hep, hep_dp and rig_f. 

The simulations were performed on the GROMACS 2019.4 molecular dynamics engine, with the ProMPT forcefield for coarse-grained molecular dynamics. Four independent trials: trial_A, trial_B, trial_C and trial_D were performed per system, each with different starting velocities. Each trial was run for 3000 ns.

Contents

> heparin_abeta_trajectories.zip

The repository contains the zip file heparin_abeta_trajectories.zip with 13 folders named according to the convention, "{N_pep}pep_{N_hep}hep_dp{hep_dp}_{rig_f}xRigid". For example, data for the system consisting of 16 peptides (N_pep), 1 heparin (N_hep), 18 monosaccharides in length (hep_dp) with a rigidity factor of 100 (rig_f) would be stored in the directory 16pep_1hep_dp18_100xRigid/.

If the system did not contain heparin, N_hep, hep_dp and rig_f  were set to 0 by default. For example, data for the system consisting of 16 peptides (N_pep) and no heparin would be stored in the directory 16pep_0hep_dp0_0xRigid/.

A directory such as 16pep_1hep_dp18_100xRigid/ will have the following contents:



solute_only.ndxContains an index group for solute molecules (peptides and/or heparin) only.

trial_A/



md.tpr Portable run file with which the current trajectory was generated. This file may be used to reproduce the trajectory as well.

solute_only.cluster_center.xtc A gromacs trajectory containing only the solute molecules (peptides and/or heparin), centered with the gromacs tool gmx trjconv

solute_only.tpr A gromacs portable binary input file containing data for the solute molecules (peptides and/or heparin) only, generated with the gmx convert-tpr tool.This file may be used during analysis of the solute_only.cluster_center.xtc trajectory.



trial_B/contents same as trial_A/

trial_C/contents same as trial_A/

trial_D/contents same as trial_A/


> psf_files_for_VMD_visualization.zip

This zip file contains thirteen .psf files, one per system, that can be used in accord with solute_only.cluster_center.xtc files to visualize trajectories on the Visual Molecular Dynamics (VMD) software.

Please seek out the associated publication for essential context on these trajectories. 

To access the source files with which these simulations were set-up, and a brief tutorial, see: https://github.com/suhasgotla/heparin_amyloid_self-assembly
DOI: 10.5281/zenodo.11479853
title: Molecular dynamics trajectories and portable binary run files for the self-assembly of heparin and amyloid-β(16-22) with the ProMPT forcefield

description: About this repository

Self-assembly simulations of heparin and amyloid-β(16-22) were performed at various numbers of peptides (N_pep), number of heparin molecules (N_hep), degrees of polymerization of heparin (hep_dp) and rigidity factors (rig_f) for heparin. This repository contains one folder per system, characterized by a combination of four system variables: N_pep, N_hep, hep_dp and rig_f. 

The simulations were performed on the GROMACS 2019.4 molecular dynamics engine, with the ProMPT forcefield for coarse-grained molecular dynamics. Four independent trials: trial_A, trial_B, trial_C and trial_D were performed per system, each with different starting velocities. Each trial was run for 3000 ns.

Contents

> heparin_abeta_trajectories.zip

The repository contains the zip file heparin_abeta_trajectories.zip with 13 folders named according to the convention, "{N_pep}pep_{N_hep}hep_dp{hep_dp}_{rig_f}xRigid". For example, data for the system consisting of 16 peptides (N_pep), 1 heparin (N_hep), 18 monosaccharides in length (hep_dp) with a rigidity factor of 100 (rig_f) would be stored in the directory 16pep_1hep_dp18_100xRigid/.

If the system did not contain heparin, N_hep, hep_dp and rig_f  were set to 0 by default. For example, data for the system consisting of 16 peptides (N_pep) and no heparin would be stored in the directory 16pep_0hep_dp0_0xRigid/.

A directory such as 16pep_1hep_dp18_100xRigid/ will have the following contents:



solute_only.ndxContains an index group for solute molecules (peptides and/or heparin) only.

trial_A/



md.tpr Portable run file with which the current trajectory was generated. This file may be used to reproduce the trajectory as well.

solute_only.cluster_center.xtc A gromacs trajectory containing only the solute molecules (peptides and/or heparin), centered with the gromacs tool gmx trjconv

solute_only.tpr A gromacs portable binary input file containing data for the solute molecules (peptides and/or heparin) only, generated with the gmx convert-tpr tool.This file may be used during analysis of the solute_only.cluster_center.xtc trajectory.



trial_B/contents same as trial_A/

trial_C/contents same as trial_A/

trial_D/contents same as trial_A/


> psf_files_for_VMD_visualization.zip

This zip file contains thirteen .psf files, one per system, that can be used in accord with solute_only.cluster_center.xtc files to visualize trajectories on the Visual Molecular Dynamics (VMD) software.

Please seek out the associated publication for essential context on these trajectories. 

To access the source files with which these simulations were set-up, and a brief tutorial, see: https://github.com/suhasgotla/heparin_amyloid_self-assembly
DOI: 10.15468/dl.a9ywvu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.811924 -36.463324, 148.811924 -36.470062, 148.818662 -36.470062, 148.818662 -36.467816, 148.820907 -36.467816, 148.820907 -36.463324, 148.811924 -36.463324))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054699-240626123714530/datasets/export for details.
DOI: 10.25345/c5nv99n91
title: MassIVE MSV000095546 - Top-Down Stability of Proteins from Rates of Oxidation (SPROX) Approach for Measuring Proteoform Specific Folding Stability
title: Raw data files and TDreport for the manuscript "Top-Down Stability of Proteins from Rates of Oxidation (SPROX) Approach for Measuring Proteoform Specific Folding Stability"
DOI: 10.15468/dl.35j8vz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.910739 -36.463324, 148.910739 -36.46557, 148.912985 -36.46557, 148.912985 -36.463324, 148.910739 -36.463324))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054700-240626123714530/datasets/export for details.
DOI: 10.15468/dl.a86mwu
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "GadmGid is USA.42.18_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus Latreille, 1802"
 ]
}

 The dataset includes 78 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054701-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k47rrs
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.906248 -36.467816, 148.906248 -36.472308, 148.904002 -36.472308, 148.904002 -36.474553, 148.908494 -36.474553, 148.908494 -36.467816, 148.906248 -36.467816))"
 ]
}

 The dataset includes 52 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054702-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26093/cds/vizier.74361465
title: Star clusters distances and extinctions

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' Properties of star clusters. I. Automatic distance and extinction estimates.' (bibcode: 2013MNRAS.436.1465B)
DOI: 10.26093/cds/vizier.74361883
title: Properties of KOI host stars

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' Rotation periods, variability properties and ages for Kepler exoplanet candidate host stars.' (bibcode: 2013MNRAS.436.1883W)
DOI: 10.26093/cds/vizier.74361919
title: SCUBA observations of COSMOS galaxies

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' Characterization of Scuba-2 450{mu}m and 850{mu}m selected galaxies in the COSMOS field.' (bibcode: 2013MNRAS.436.1919C)
DOI: 10.26093/cds/vizier.74360002
title: Transits of WASP-19b

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' Physical properties, transmission and emission spectra of the WASP-19 planetary system from multi-colour photometry.' (bibcode: 2013MNRAS.436....2M)
DOI: 10.26093/cds/vizier.74360275
title: Relaxation parameter of 2092 rich galaxy clusters

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' Substructure and dynamical state of 2092 rich clusters of galaxies derived from photometric data.' (bibcode: 2013MNRAS.436..275W)
DOI: 10.26093/cds/vizier.74362915
title: Polarization of bright AT20G sources

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' A polarization survey of bright extragalactic AT20G sources.' (bibcode: 2013MNRAS.436.2915M)
DOI: 10.26093/cds/vizier.74360034
title: GALEX Arecibo SDSS survey. Final data release

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' The GALEX Arecibo SDSS survey. VIII. Final data release. The effect of group environment on the gas content of massive galaxies.' (bibcode: 2013MNRAS.436...34C)
DOI: 10.26093/cds/vizier.74363557
title: HTRU survey: long-period pulsars polarimetry

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' The High Time Resolution Universe survey. IX. Polarimetry of long-period pulsars.' (bibcode: 2013MNRAS.436.3557T)
DOI: 10.26093/cds/vizier.74363581
title: X-ray observations of Stripe 82

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' Finding rare AGN: XMM-Newton and Chandra observations of SDSS Stripe 82.' (bibcode: 2013MNRAS.436.3581L)
DOI: 10.26093/cds/vizier.74363759
title: ECDFS sources optical/IR counterparts

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' The sub-mJy radio sky in the Extended Chandra Deep Field-South: source population.' (bibcode: 2013MNRAS.436.3759B)
DOI: 10.26093/cds/vizier.74360413
title: VISTA ZJKs photometry of Sgr dSph

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' VISTA's view of the Sagittarius dwarf spheroidal galaxy and southern Galactic bulge.' (bibcode: 2013MNRAS.436..413M)
DOI: 10.26093/cds/vizier.74360430
title: SCUBA-2 cosmology legacy survey

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' The SCUBA-2 cosmology legacy survey: demographics of the 450-{mu}m population.' (bibcode: 2013MNRAS.436..430R)
DOI: 10.26093/cds/vizier.74360718
title: Extremely faint planetary nebulae in SDSS

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' Hunting for extremely faint planetary nebulae in the SDSS spectroscopic database.' (bibcode: 2013MNRAS.436..718Y)
DOI: 10.26093/cds/vizier.74360774
title: Core collapse supernovae (type Ibc)

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' The death of massive stars. II. Observational constraints on the progenitors of type Ibc supernovae.' (bibcode: 2013MNRAS.436..774E)
DOI: 10.26093/cds/vizier.74360953
title: OGLE-LMC-CEP-0227 RV and VI[3.6] curves

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' Physical parameters and the projection factor of the classical Cepheid in the binary system OGLE-LMC-CEP-0227.' (bibcode: 2013MNRAS.436..953P)
DOI: 10.26093/cds/vizier.74360997
title: Luminous radio galaxies & type-2 quasars

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' The environments of luminous radio galaxies and type-2 quasars.' (bibcode: 2013MNRAS.436..997R)
DOI: 10.26093/cds/vizier.74371070
title: DYNAMO. H{alpha} luminous galaxies sample

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' DYNAMO. I. A sample of H{alpha}-luminous galaxies with resolved kinematics.' (bibcode: 2014MNRAS.437.1070G)
DOI: 10.26093/cds/vizier.74371216
title: VAST Survey. A-type stars multiplicity

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' The VAST Survey. III. The multiplicity of A-type stars within 75pc.' (bibcode: 2014MNRAS.437.1216D)
DOI: 10.26093/cds/vizier.74371241
title: Be 81, NGC 1917 and NGC 2141 BVI photometry

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' NGC 1817, NGC 2141 and Berkeley 81: three BOCCE clusters of intermediate age.' (bibcode: 2014MNRAS.437.1241D)
DOI: 10.26093/cds/vizier.74371561
title: DR 21 Chandra source catalogue

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' The role of low-mass star clusters in forming the massive stars in DR 21.' (bibcode: 2014MNRAS.437.1561R)
DOI: 10.26093/cds/vizier.74371609
title: NGC 2808 HB stars abundances

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' Helium enhanced stars and multiple populations along the horizontal branch of NGC 2808: direct spectroscopic measurements.' (bibcode: 2014MNRAS.437.1609M)
DOI: 10.15468/dl.ytccr2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.040996 -36.467816, 149.040996 -36.470062, 149.043241 -36.470062, 149.043241 -36.467816, 149.040996 -36.467816))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054703-240626123714530/datasets/export for details.
DOI: 10.26093/cds/vizier.74371628
title: NGC 7142 Vilnius photometry

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' The open cluster NGC 7142: interstellar extinction, distance and age.' (bibcode: 2014MNRAS.437.1628S)
DOI: 10.26093/cds/vizier.74371725
title: Galactic globular clusters SDSS photometry

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' G2C2-I. Homogeneous photometry for Galactic globular clusters in SDSS passbands.' (bibcode: 2014MNRAS.437.1725V)
DOI: 10.26093/cds/vizier.74371791
title: RMS survey: molecular observations

description: VizieR online Data Catalogue associated with article published in journal Monthly Notices of the Royal Astronomical Society with title ' The RMS survey: galactic distribution of massive star formation.' (bibcode: 2014MNRAS.437.1791U)