cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dg82p/1
title: Morphological measurements and Ectodysplasin genotype scores

description: This file contains raw and size-adjusted (adj) length measurements and lateral plate counts as well as ectodysplasin genotypes.
DOI: 10.5061/dryad.h0f07/3
title: Landscape Data

description: This file contains raster values for elevation, slope and aspect for the subset of individuals (n=192) included in the landscape genetic analysis. Matt Rhodes and Jeremie Fant collected these data in 2013.
DOI: 10.5061/dryad.h8j92/1
title: All TRAV_TRDV genes aligned

description: Alignment of the nucleotide sequence of the V-REGION (IMGT nomenclature) of all human, murine and bovine TRAV/TRDV genes following pairwise deletion to remove gaps. The alignment was performed using MEGA5 software (http://megasoftware.net/). The final dataset included 400 positions. The sequence of bTRBV3a was used to root the tree.
DOI: 10.5061/dryad.h8j92/2
title: All TRAV_TRDV phylogenetic tree

description: Neighbour-joining phylogenetic tree of all murine, human and bovine (from the UMD3.1 assembly) TRAV/TRDV genes. Analysis of the nucleotide sequence of the V-REGION (IMGT nomenclature) following pairwise deletion to remove gaps in the alignment. The final dataset included 400 positions. The sequence of bTRBV3a was used to root the tree. Based on a 1000 boot strap replicates the phylogenetically inferred orthologous TRAV/TRDV subgroups were supported by percentage bootstrap values (PB) of &gt;90% in all cases except for bTRAV38 (PB= 83%), bTRAV5 (PB= 59%), bTRAV13 (PB= 85%)  and bTRAV8 (PB= 68%). Sequence identity between bovine and human genes in orthologous groups ranged from 63.1-84.9%, sufficient to assign them as inter-species orthologues. Generally the phylogenetically defined bovine TRAV/TRDV subgroups adhered to the convention of members sharing &gt;75% nucleotide identity. However, within both the bTRDV1 and bTRAV8 subgroups identity between some members was &lt;75% (down to 68.0 and 69.7% respectively) and conversely the identity between some bTRAV5/13 and some bTRAVX/18 members was &gt;75%. Due to difficulties in alignment the following genes were excluded from the analysis i) bovine genes for which only incomplete or partial genomic sequences were available, ii) bTRAV11a – due to the presence of a large insert and iii) mTRAV15-3, mTRAV15D-3, hTRAV8.5. h = human, b = bovine and m = murine.
DOI: 10.5061/dryad.h8j92/3
title: All TRAJ genes aligned

description: Alignment of the nucleotide sequence of the coding domain of all human, murine and bovine TRAJ genes following pairwise deletion to remove gaps in the alignment. The alignment was performed using MEGA5 software (http://megasoftware.net/). The final dataset had a total of 85 positions.
DOI: 10.5061/dryad.h8j92/4
title: All TRAJ genes phylogenetic tree

description: Neighbour-joining phylogenetic tree of all murine, human and bovine (from the UMD3.1 assembly) TRAJ genes. Analysis of the nucleotide sequence of the coding domain of TRAJ genes following pairwise deletion to remove gaps in the alignment. The final dataset had a total of 85 positions. Based on a 1000 boot strap replicates the orthologous TRAJ genes from mouse, human and cattle (where all genes were functional) formed phylogenetic groups supported by percentage bootstrap values (PB) of &gt;75% (with the exception of TRAJ6 (PB = 54%), 9 (53%) and 48 (67%)). PB values supporting the phylogenetic groups of TRAJ orthologues which included non-functional members were generally high but in several cases were &lt;50%. h = human, b = bovine and m = murine. The formation of ‘triads’ composed of single genes from each species (except TRAJ10 which lacks a murine gene and TRAJ8 which contains 2 bovine genes) that have the same relative position in the genome (as denoted by their numerical designation) demonstrates conserved synteny. The level of nucleotide identity between orthologous bovine and human TRAJ genes ranges from 63.2% to 95.2%.
DOI: 10.5061/dryad.h8j92/5
title: Functional TRAV_TRDV genes aligned

description: Alignment of the nucleotide sequence of the V-REGION (IMGT nomenclature) of human, murine and bovine TRAV/TRDV genes that are predicted by in silico sequence analysis to be functional, following pairwise deletion to remove gaps. The alignment was performed using MEGA5 software (http://megasoftware.net/). The final dataset included 340 positions. The sequence of bTRBV3a was used to root the tree.
DOI: 10.5061/dryad.h8j92/6
title: Functional TRAV_TRDV genes phylogenetic tree

description: Phylogenetic analysis of the repertoires of functional TRAV/TRDV genes in mice, humans and cattle. A - Neighbour-joining phylogenetic tree of all functional murine, human and bovine (from the UMD3.1 assembly) TRAV/TRDV genes. Analysis of the nucleotide sequence of the V-REGION (IMGT nomenclature) following pairwise deletion to remove gaps in the alignment. The final dataset included 340 positions. The sequence of bTRBV3a was used to root the tree. Based on 1000 boot strap replicates support for Groups 1 (purple), 3 (green) and 4 (red) was high with PB &gt;97%. Support for Group 2 (blue) was low (PB= 13%) but examination of the data using UPMGA and minimum evolution models generated the same phylogenic groups, suggesting it was reliable (data not shown). h = human, b = bovine and m = murine. Percentage of the functional (B) and total (C) TRAV/TRDV genes in humans, mice and cattle in the 4 phylogenetic Groups defined from neighbour-joining analysis.
DOI: 10.5061/dryad.j2p71/1
title: Dataset_of_Swriling_flow_In_Helical_Tube

description: This dataset includes every geometrical parameter of the helical tubes, fluid-dynamic results obtained from particle image velocimetry (PIV) and computational fluid-dynamics (CFD) as described in the manuscript. All details of parameters are explained in the data file
DOI: 10.5061/dryad.jm7k1/1
title: Data file

description: Variable names are explained in data file.
DOI: 10.5061/dryad.pb282/1
title: Raw data

description: raw data used to create figures in the manuscript.
DOI: 10.5061/dryad.q2b2m/4
title: qpcr_data

description: Ct data obtained for sxtU gene in 2007 and 2000 samples and for the calibration curve based on the cloned gene used to quantify the number of sxtU copies.
DOI: 10.5061/dryad.r0g9m/1
title: Fitness, Within-Tetrad Mating, and Germination in Wild Yeast

description: This file contains 6 tables with the raw colony counts from the experiments described in the associated paper. This includes the calculations used to find the fitnesses, within-tetrad mating, and expected spore germination data. Abbreviations: YPD, Yeast extract peptone dextrose medium; SOE, synthetic oak exudate medium.
DOI: 10.5061/dryad.sb1j1/1
title: Complete dataset with all nucleotide positions

description: 10-marker, 197-taxon, 17kb dataset of Euphorbia plus subfamily Euphorbioideae outgroups based on the dataset of Horn et al. (Mol. Phylogenet. Evol. 63:305–326, 2012), with 23 additional Euphorbia taxa. This Nexus file archives the full alignment, exclusion sets, and locus partitions.
DOI: 10.5061/dryad.sb1j1/2
title: Exclusion sets, data partitions & models, and Bayesian analysis parameters

description: 10-marker, 197-taxon, 11.5kb dataset of Euphorbia plus subfamily Euphorbioideae outgroups based on the dataset of Horn et al. (Mol. Phylogenet. Evol. 63:305–326, 2012), with 23 additional Euphorbia taxa. This Nexus file has exclusion sets removed from the full-length 17kb dataset (i.e., "Eliminate" command in PAUP execution of the full-length 17kb dataset), and archives data partitions and models, and MrBayes run parameters as described in the Supplemental Methods. See Table S2 for a fuller description of the subset partitions within each of the 15 partitions.
DOI: 10.5061/dryad.sb1j1/3
title: Divergence dating analysis dataset and execution parameters

description: 10-marker, 197-taxon, 11.5kb dataset of Euphorbia plus subfamily Euphorbioideae outgroups based on the dataset of 10-marker, 197-taxon, 11.5kb dataset of Euphorbia plus subfamily Euphorbioideae outgroups based on the dataset of Horn et al. (Mol. Phylogenet. Evol. 63:305–326, 2012), with 23 additional Euphorbia taxa.. This xml file generated by BEAUTi v1.7.4 archives the details of calibration and starting-tree priors for the divergence-dating analysis using BEAST v1.7.4.
DOI: 10.5061/dryad.t0g84/1
title: phenotypic_selection

description: Data collected from mating trials and the CHC phenotype of individuals from the trials. trait_1-trait_7 refer to the log contrast values of the 7 chc's of interest. Ms refers to the individual either being chosen (1) or rejected (0) in the binomial mating trial.
DOI: 10.5061/dryad.t0g84/2
title: CHC sexual displays

description: Data for the analysis of genetic variance in the linear combination of traits under sexual selection in each sex (beta).
DOI: 10.5061/dryad.t0g84/3
title: Mate preference

description: Data for the estimation of genetic variance in male and female preference for the linear combination of traits under sexual selection
DOI: 10.5061/dryad.t173v/1
title: matrix_AFLPs_llanos_Xam

description: Presence/ absence matrix generated using AFLPs. Xam isolates were typed using four primer combination. 57 polymorphic bands were included in this matrix.
DOI: 10.5061/dryad.t173v/2
title: NJ_AFLP_bootstrap_llanos_Xam

description: Unrooted distance tree with the Neighbor-Joining algorithm was generated in SplitsTree version 4.12.3. Branch supports were determined running 1000 bootstrap replicates.
DOI: 10.5061/dryad.t173v/3
title: Matrix_VNTR_llanos_Xam

description: Matrix generated by presence or absence of an allele in a specific VNTR locus. In total 5 VNTR loci were used. The allele number for each locus is variable and those are described in the table 1 of the manuscript.
DOI: 10.5061/dryad.t173v/4
title: NJ_VNTR_bootstrap_llanos_Xam

description: VNTR data were used to created an unrooted distance tree with the Neighbor-Joining algorithm in SplitsTree version 4.12.3. One thousand bootstrap replicates were run.
DOI: 10.5061/dryad.t173v/5
title: AFLPs Raw Data

description: AFLPs Raw data matrix. This data were obtained from the presence or absence of band in the polyacrylamide gels. 111 isolates were includes and 57 band were scored. These data were implemented to generate the distance tree and the  Minimum Spanning Network using SplitsTree version 4.12.3  and BioNumerics software (version 7.1) respectively.
DOI: 10.5061/dryad.t173v/6
title: VNTR Raw data

description: This file contains the numbers of the repeats obtained from the sequenced VNTR loci. These data were implemented to generated the Minimum Spanning Network using BioNumerics software (version 7.1)
DOI: 10.5061/dryad.vr15t/10
title: Reindeer Counts for each study block and year

description: Contains Block ID, Surveyed area and Reindeer Count for each year in each block.
DOI: 10.5061/dryad.vr15t/11
title: Site (1st dimension) And Species (3rd dimension) Sequence in the Species Detection History Tables

description: Site names and species names for the 1st and 3rd dimension, respectively, of the Presence/Absence data arrays, per year and study blocks. Important to be able to assign the correct reindeer abundance to the respective study blocks and for interpreting estimates for the respective species in the carnivore community.
DOI: 10.5061/dryad.vr15t/7
title: Bait Covariate VarangerNordkinn 2009

description: Covariate for detection indicating the days since bait was either put out or replaced (i.e. 0,1,2,3,...).
DOI: 10.5061/dryad.vr15t/9
title: Bait Covariate VarangerNordkinn 2011

description: Covariate for detection indicating the days since bait was either put out or replaced (i.e. 0,1,2,3,...).
DOI: 10.5061/dryad.vt82p/1
title: Model code and input data files

description: This folder provides R code (.R file) and all input data files (.csv files).  With the information and data provided, main results presented in the corresponding manuscript can be recreated.  See 'ReadMe.txt' file for a description of each file in the 'Data files.zip' folder.
DOI: 10.7925/drs1.ucdlib_32368
title: 13 Westmoreland Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 5 levels above ground, constructed 1862.
description: Dublin City Council, Record of Protected Structures (2010), no. 8538
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32371
title: 14 Westmoreland Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Stone cladding structure, 5 levels above ground, constructed 1866.
description: Dublin City Council, Record of Protected Structures (2010), no. 8539
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32374
title: 15 Westmoreland Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 5 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 8540
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32377
title: 16 Westmoreland Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 5 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 8541
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32380
title: 17 Westmoreland Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 5 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32383
title: 18-19 Westmoreland Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 5 levels above ground, constructed 1979.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32386
title: Westmoreland Street 20

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 5 levels above ground, constructed 1979.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32389
title: 27 Westmoreland Street, Dublin 2, Ireland

description: Consists of 2 orthorectified images of the structure. The orthorectified images have been derived from one or more photographic image that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and other image layers have been extracted and saved in TIFF image files, as well as JPEG files in various resolutions to facilitate inspection.
description: Blockwork structure, 5 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 8544
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32393
title: 28 Westmoreland Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 5 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 8545
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.2df1n/1
title: Data for Dryad. Cuckoo shift from acceptance

description: Excel file with raw data use for the analyses presented in the paper
DOI: 10.5061/dryad.30qt0/1
title: 33 Birds Final Dispersal Table

description: Raw Data File of Dispersal Distances by Sex
DOI: 10.5061/dryad.30qt0/2
title: 185 Birds Genalex Analysis by Sex

description: Microsatellite data from 185 birds, split by sex and group, for Genalex analysis
DOI: 10.5061/dryad.30qt0/3
title: Sparrow Weaver Group Coordinates

description: Group Coordinates for Dispersal Bias Correction Simulations
DOI: 10.5061/dryad.30qt0/4
title: DistCalc Function

description: R Function to calculate euclidean distance between groups
DOI: 10.5061/dryad.52d4f/1
title: Generation 0

description: Body mass measurements for tribolium larvae. In generation 0, these beetles have not yet undergone selection, but rather set a standard on which selection can be enacted to produce generation 1. Each row represents sequential mass measurements for a given individual. The column headings, in order, represent the beetled identification number (ID), its sex (Sex), the sire that produced it (Sire), the dam that produced it (DAM), the date of its egg hatch (HatchDate), the date of the first measurement (Date1), the age at first measurement (DSH1), the mass at first measurement (Mass1), the date of second measurement (Date2), etc. After larval measurements, information about the pupal and adult stages is listed in columns to the right: date of pupation (PubDate), age at pupation (DTP), pupal mass (PupMass), date of eclosion to the adult stage (EcDate), and age at eclosion to the adult stage (DTE). Any individuals who do not have a pupal mass measurement did not survive to pupation, and individuals without an eclosion date (but with a pupal mass measure) survived to pupation but not to eclosion.
DOI: 10.5061/dryad.52d4f/2
title: Generation 1

description: Each row represents sequential mass measurements for a given individual. The column headings, in order, represent the beetled identification number (ID), its sex (Sex), the sire that produced it (Sire), the dam that produced it (DAM), the date of its egg hatch (HatchDate), the date of the first measurement (Date1), the age at first measurement (DSH1), the mass at first measurement (Mass1), the date of second measurement (Date2), etc. After larval measurements, information about the pupal and adult stages is listed in columns to the right: date of pupation (PubDate), age at pupation (DTP), pupal mass (PupMass), date of eclosion to the adult stage (EcDate), and age at eclosion to the adult stage (DTE). Any individuals who do not have a pupal mass measurement did not survive to pupation, and individuals without an eclosion date (but with a pupal mass measure) survived to pupation but not to eclosion.
DOI: 10.5061/dryad.52d4f/3
title: Generation 2

description: Each row represents sequential mass measurements for a given individual. The column headings, in order, represent the beetled identification number (ID), its sex (Sex), the sire that produced it (Sire), the dam that produced it (DAM), the date of its egg hatch (HatchDate), the date of the first measurement (Date1), the age at first measurement (DSH1), the mass at first measurement (Mass1), the date of second measurement (Date2), etc. After larval measurements, information about the pupal and adult stages is listed in columns to the right: date of pupation (PubDate), age at pupation (DTP), pupal mass (PupMass), date of eclosion to the adult stage (EcDate), and age at eclosion to the adult stage (DTE). Any individuals who do not have a pupal mass measurement did not survive to pupation, and individuals without an eclosion date (but with a pupal mass measure) survived to pupation but not to eclosion.