cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/jbjgwhkbjg
title: Rice performance under rainfed condition in Bangladesh

description: Its a varietal performance dataset of rice. The trial was conducted in five rainfed areas of Bangladesh.
DOI: 10.6084/m9.figshare.23276315.v1
title: Supplementary Material for: Individualized homeopathic medicines in the treatment of psoriasis vulgaris: Double-blind, randomized, placebo-controlled trial

description: Introduction: Psoriasis is a chronic inflammatory skin disorder, affecting the trunk and extensor surfaces of limbs and scalp predominantly. Worldwide prevalence ranges between 0.1 and 11.4%, and in India between 0.4 and 2.8%; this creates a serious health burden. Psoriasis remains a frequently encountered condition in homeopathy practice, but there is a dearth of conclusive efficacy data supporting its use. Methods: This 6-month, double-blind, randomized trial was conducted on 51 patients suffering from psoriasis at the National Institute of Homoeopathy, India. Patients were randomized to receive either individualized homeopathic medicines (IHMs; n = 25) in LM potencies or identical-looking placebos (n=26). Psoriasis area and severity index (PASI; primary), psoriasis disability index (PDI), and dermatological life quality index (DLQI; secondary) were measured at baseline, and every 2 months, up to 6 months. The intention-to-treat sample was analyzed using a two-way repeated measure analysis of variance. Results: Although intra-group changes were significant in both groups in the outcome measures, improvements were significantly higher in the IHMs group than in placebos in PASI scores after 6 months of intervention (F1, 49 = 10.448, P = 0.002). DLQI daily activity subscale scores also yielded similar significant results favoring IHMs against placebos after 6 months (F1, 49 = 5.480, P = 0.023). Improvement in PDI total (F1, 49 = 0.063, P = 0.803), DLQI total (F1, 49 = 1.371, P = 0.247), and all remaining subscales were higher in the IHMs group than placebos after 6 months, but non-significant statistically. Calcarea carbonica, Mercurius solubilis, Arsenicum album, and Petroleum were the most frequently prescribed medicines. Conclusions: IHMs exhibited better results than placebos in the treatment of psoriasis. Further research is warranted. Trial registration: CTRI/2019/11/021917; UTN: U1111-1242-8843
DOI: 10.6084/m9.figshare.24425485.v3
title: Modeling of the Sediment Transport and Deposition in the Yellow River Estuary during the Water-Sediment Regulation Scheme

description: This dataset contains salinity, suspended sediment concentration (SSC), distribution of median grain size, and bed thickness change during the Water and Sediment Regulation Scheme (WSRS) in the Yellow River Estuary in 2010.
DOI: 10.6084/m9.figshare.28677734.v1
title: Supplementary Material for: Advancing Precision Medicine for hypertensive nephropathy: a novel prognostic model incorporating pathological indicators

description: Introduction: This study aims to assess the long-term renal prognosis of patients with hypertensive nephropathy (HN) diagnosed through renal biopsy, utilizing the random survival forest (RSF) algorithm.
Methods: From December 2010 to December 2022, HN patients diagnosed by renal biopsy in Xijing Hospital were enrolled and randomly divided into training set and testing set at a ratio of 7∶3. The study's composite endpoint was defined as a ≥ 50% decline in estimated glomerular filtration rate (eGFR), ESRD, or death. RSF and Cox regression were used to establish a renal prognosis prediction model based on the factors screened by the RSF algorithm. The Concordance index (C-index), integrated brier score (IBS), net reclassification index (NRI), and integrated discrimination improvement (IDI) were used to evaluate discrimination, calibration, and risk classification, respectively.
Results: A total of 225 patients were included in this study, with 72 (32.0%) patients experiencing combined events after a median follow-up of 29.9 (16.6, 52.1) months. Six eligible variables (overall chronicity grade of renal pathology, eGFR, high-density lipoprotein cholesterol, hematocrit, monocyte, and stroke volume) were selected from clinical data and introduced into the RSF model. The RSF model had a higher C-index in both the training set [0.904 (95%CI 0.842 - 0.938) vs 0.831 (95%CI 0.768 - 0.894), P &lt; 0.001] and the testing set [0.893 (95%CI 0.770 - 0.944) vs 0.841 (95%CI 0.751 - 0.931), P = 0.021] compared to the Cox model. NRI and IDI indicated that the RSF model outperformed the Cox model regarding risk classification and discrimination.
Conclusion: In this study, the RSF algorithm was employed to identify the risk factors affecting the prognosis of HN patients, and a clinical prognostic RSF model was constructed to predict the adverse outcomes of HN patients based on renal pathology. Compared to the traditional Cox regression model, the RSF model offers superior performance and can provide valuable new insights for clinical diagnosis and treatment strategies.
DOI: 10.6084/m9.figshare.7559153.v1
title: MOESM2 of Chromatin changes in Anopheles gambiae induced by Plasmodium falciparum infection

description: Additional file 2: Table S2. Summary of RNA-seq and ChIP-seq alignment statistics.
DOI: 10.6084/m9.figshare.9793013.v2
title: Data, including genome annotation files, accompanying Card et al. Genomic basis of convergent island phenotypes in boa constrictors

description: Data processing and analysis scripts and intermediate and final datasets accompanying Card et al. Genomic basis of convergent island phenotypes in boa constrictors. Genome Biology & Evolution. This includes all annotation files for the produced genome annotation for Boa constrictor. See FileS01_SuppFileDesc.docx for a full manifest of the files.
DOI: 10.6084/m9.figshare.9696863.v1
title: Professional education on dementias in Primary Health Care: an integrative review

description: ABSTRACT Objective: To investigate the most commonly used educational approaches in dementia training for primary health care professionals. Method: Integrative literature review, conducted between April and June of 2018, in PubMed, LILACS and IBECS databases. The descriptors used were: Training, Health Personnel, Dementia, Primary Health Care for PubMed; and the MeSH terms, Training Programs, Health Personnel, Dementia, and Primary Health Care for LILACS and IBECS. Results: The sample consisted of 13 articles; eight were published in the last five years (62%); seven articles with a quantitative approach (54%); seven articles produced on the European continent (54%), followed by five published on the North American continent (38%). All journals were from the health area (100%). Conclusion: Educational strategies were combined and used for education. Significant improvements in knowledge, skills, and attitudes of the teams with regard to professional management of dementias were evidenced.
DOI: 10.6084/m9.figshare.20516877.v1
title: 2018_sECS-pCO2data.xlsx

description: This data set is for the paper " Factors controlling the partial pressure of carbon dioxide in upwelling regions of sea surface: a case study of the southern East China Sea before and after Typhoon Maria ."
DOI: 10.6084/m9.figshare.21521199.v4
title: Combined GPS velocity field and the one improved with median spatial filtering applied in North China

description: The combined GPS velocity field (Table S1) and the one (Table S2) improved with median spatial filtering applied in North China, contain 376 GPS velocities with respect to the stable Eurasian plate reference frame. Ve_E & Vn_E represent the east and north velocity components under Eurasian plate. dVe & dVn indicate the east and north velocitiy uncertainties (standard deviation). Cen is the east and north velocity correlation.
DOI: 10.6084/m9.figshare.28615445.v1
title: Supplementary Material for: The utilisation, application and quality of videos of clinical interventions in peer-reviewed literature: a scoping review

description: Background: Videos of clinical interventions (VoCI) demonstrating surgical and interventional procedures have become a mainstay in clinical practice and peer-reviewed academic literature. Despite the widespread availability of VoCI in the literature, there remains no established guidelines regarding the reporting of VoCI. We undertook a scoping review to investigate the current utilisation, application, and quality in VoCI reporting.

Methods: A comprehensive literature search of MEDLINE, EMBASE, Emcare and CINAHL databases was performed to retrieve articles presenting VoCI, from January 2020 to December 2023. A customised data extraction tool assessed video characteristics (e.g. case presentation, outcomes), utility (e.g. target audience, reproducibility of procedure) and quality (subjective and objective). 

Results: Six hundred and twenty-four VoCI were included (mean length 06:06), with over 62 hours of VoCI reviewed. The most common VoCI perspectives were endoscopic (n = 153; 25%) and laparoscopic (n = 140; 22%). The clinical background and outcomes were described in 480 (76.9%) and 403 cases (64.6%), respectively, with disclosures (n = 23; 3.8%) rarely presented. VoCI primarily targeted trainees (n = 547; 87.7%) with most videos providing technical guidance (n = 394; 63.1%). Two hundred and forty-eight videos (40%) were rated as medium or low quality on subjective assessment. 

Conclusions: There is significant heterogeneity and notably poor quality control in VoCI reporting in peer-reviewed literature resulting in the omission of critical procedural steps and suboptimal visual quality. VoCI reporting guidelines are therefore urgently required to provide a set of minimum items that should be reported by clinicians when uploading VoCI.
DOI: 10.6084/m9.figshare.28677560.v1
title: Cuestionario estudiantes de CBTIS 21

description: Cuestionario aplicado a estudiantes de la escuela pública Centro de Bachilleres Tecnológicos Industrial y de Servicios (CBTIS) No. 21.
DOI: 10.6084/m9.figshare.28730093.v1
title: Virgo Benchmarking Datasets

description: 1. <b>Global Ocean Eukaryotic Viral (GOEV) Database</b><br>Source: Extract from Gaïa M. et al. Nature (2023)Components:<br>591 MAGs from Schulz, F. et al. (2020) [DOI: 10.1038/s41586-020-1957-x]<br>445 MAGs from Sunagawa, S. et al. (2020) [DOI: 10.1038/s41579-020-0364-5]<br>218 MAGs from Moniruzzaman, M. et al. (2020) [DOI: 10.1038/s41467-020-15507-2]<br>158 reference viral assemblies<br>Accessed: July 20, 2024Data File: GOEV_DB_CONTIGS.db.zip from FigshareSelection Criteria: Only contigs labeled at the Order taxonomic level were retainedSampling Method: Not applicableFinal Sample Size: 1,412 viral contigs<br>--<br><br>2. <b>Known Viral Sequence Clusters (kVSCs)</b><br>Source: Extract from Zolfo, M. et al. (2024) [DOI: 10.1101/2024.02.19.580813]Data Files:<br>VSC5_rep_fnas_nr99_45k_metaphlanDB.fna.gz<br>VSCs_groups.csv metadata<br>Downloaded From: Zenodo, last accessed June 28, 2024Selection Criteria:<br>Started from 45,872 representative sequences from MetaPhlan 4.1<br>Selected kVSCs (sequences clustering with a RefSeq representative)<br>Verified RefSeq accessions against ICTV Release #39 for accurate labeling<br>Sampling Method: RefSeq matching based on metadataFinal Sample Size: 2,232 representative sequences<br>--<br><br>3. <b>ICTV Release #39</b><br>Source: International Committee on Taxonomy of Viruses (ICTV) Release #39Downloaded Using: ICTVdump tool on July 17, 2024Selection Criteria:<br>Viruses present in both VMR releases #37 and #39<br>At least two representatives per family<br>Sampling Method: Up to 5 genomes randomly sampled per family using pandas.sample(), 192 families represented.Final Sample Size: 860.<br>--<br><br>4. <b>RefSeq Viral Dataset (Random Iteration)</b><br>Source: NCBI Virus Portal NCBI Virus accessed on January 27, 2025Selection Criteria:<br>Viruses with an assigned family-level taxonomy, up to 43 viruses per family<br>Sampling Method: Random uniform samplingFinal Sample Size: 6,778 viral genomes<br>--<br><br>5. <b>RefSeq Viral Dataset (Prokaryote-Infecting)</b><br>Source: NCBI Virus Portal NCBI Virus accessed on January 27, 2025Selection Criteria:<br>Viruses with an assigned family-level taxonomy<br>Prokaryote-infecting viruses only<br>Sampling Method: Random uniform samplingFinal Sample Size: 3,536 viral genomes<br>--<br><br>6. <b>ICTV Release #39 (Reduction Study Subset)</b><br>Source: International Committee on Taxonomy of Viruses (ICTV) Release #39Downloaded Using: ICTVdump tool on July 17, 2024Selection Criteria: 1,000 viruses randomly sampled from the full releaseSampling Method: Random uniform samplingFinal Sample Size: 1,000 viral genomes<br>Notes: Reduction study starting data. We provide the source code for generating the fragmented genomes.
DOI: 10.6084/m9.figshare.9274094.v1
title: Dataset-BIS15S and SNAP25

description: Dataset for BIS15S and SNAP25 in a Colombian sample
DOI: 10.6084/m9.figshare.24032196.v1
title: Data from "Spatial filtering strategies for mitigating sampling bias in species distribution models"

description: Results obtained and analysed in Lamboley & Fourcade, Spatial filtering strategies for mitigating sampling bias in species distribution models. Briefly, we used two virtual species with contrasting levels of specialisation to explore the impact of spatial filtering distances on the performance of ecological niche models. This investigation was conducted across a spectrum of modelling conditions, encompassing diverse types and degrees of bias, as well as varying sample sizes.Results reporting the overlap between modelled and true distributions:Unbiased_distribution.csv: results for the models trained from unbiased, i.e. randomly sampled, datasetsBiased_corrected_distribution.csv: results for the models trained from biased datasets, corrected with various spatial filtering distancesResults reporting the overlap between modelled and true response curves:Unbiased_response_curves.csv: results for the models trained from unbiased, i.e. randomly sampled, datasetsBiased_corrected_response_curves.csv: results for the models trained from biased datasets, corrected with various spatial filtering distances
DOI: 10.6084/m9.figshare.7706960.v1
title: PSD.txt

description: THIS IS A TEST FILE
DOI: 10.17632/57yvy3gx8f
title: Mind Matters: USDI-30 Depression Dataset of Bangladeshi University Students for Machine Learning Analysis

description: The Mind Matters: USDI-30 Depression Dataset of Bangladeshi University Students for Machine Learning Analysis contains data from 823 university students, collected from two prominent institutions in Bangladesh: Daffodil International University (DIU) and the University of Dhaka. The dataset is based on the University Student Depression Inventory (USDI-30) scale, which measures 30 key psychological and emotional indicators of depression, such as mood, motivation, self-worth, and social engagement.

Each participant's data was collected with individual informed consent, ensuring that all respondents were aware of the purpose of the study, the confidentiality of their data, and their right to withdraw at any time. Demographic information was also collected with consent, including age, gender, academic year, and field of study, providing richer context for analysis.

To further enhance the dataset’s validity, all responses were reviewed and validated by domain experts, including licensed psychologists, ensuring that the data accurately reflects the mental health status of the respondents.

Key features:

1. 823 validated responses from DIU and University of Dhaka students.
2. 30 depression indicators based on the USDI-30 scale, covering comprehensive mental health dimensions.
3. Demographic data including age, gender, academic year, and field of study, collected with informed consent.
4. Domain expert validation by psychologists, ensuring high data quality and relevance.
5. The dataset is cleaned and pre-processed, making it ready for machine learning and predictive analysis.

Depression Labelling Steps: The answers of USDI-30 questions converted into numerical score such as Never = 0, Rarely (less than one day) = 1, Occasionally (1-2 days) = 2, Frequently (3-4 days) = 3, and Most of the time (5-7 days) = 4.

The depression levels based on the USDI Scale:
1. 0-30 = No Depression
2. 30-60 = Mild Depression
3. 60-90 = Moderate Depression
4. 90-120 = Severe Depression

This dataset serves as a valuable resource for mental health researchers, data scientists, and AI practitioners. It provides a solid foundation for developing predictive models, understanding depression trends, and facilitating early intervention strategies for university students at risk of depression.
DOI: 10.17632/wbwht34nbj
title: CLAY/7/691 and CLAY/7/64

description: CLAY/7/691 is a genuinely multivariate generic CPTu-USS dataset compiled utilizing the CLAY/6/535 and CLAY/10/7490 datasets provided by ISSMGE TC304 (available on: http://140.112.12.21/issmge/tc304.htm?=6). The term "generic" describes a database that covers a broader range of conditions than those encountered at specific sites. The term "genuinely multivariate" implies that all properties are measured simultaneously and recorded in the same dataset line. The CLAY/7/691 dataset comprises 691 data points for seven clay parameters that span 15 countries/regions globally, namely Canada, North Sea, UK, Norway, USA, Sweden, Haga, China, Malaysia, Singapore, Venezuela, Brazil, Italy, Korea, and one unlabelled place. The seven clay parameters are depth; vertical effective stress; normalized cone tip resistance; effective cone tip resistance; excess pore pressure; pore presure ratio; and undrained shear strength. CLAY/7/64 is a regional clay dataset located in Drammen, Norway, consisting of 64 data points. It is chosen as the site-specific testing dataset.
DOI: 10.6084/m9.figshare.23503623.v1
title: Clinical and raw microbiota data of the PREDICD study

description: Clinical and microbiota data of PREDICD study, a prospective observational study with the aim to predict a recurrent Clostridium difficile infection using clinical factors and fecal microbiota composition. n=209 patients, per patient 2 samples were collected: one before initiation of C. difficile treatment and one approximately 5 days after start of treatment. Follow-up duration was 8 weeks.
DOI: 10.15468/dl.usnqbu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina silus (Ascanius, 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((51.9067 10.3601,51.6539 10.8496,44.9648 10.8496,44.9648 1.8496,45.9851 1.8496,46.3652 2.0796,48.3314 4.1285,49.4027 5.7662,49.6642 6.5145,51.2543 9.1551,51.377 9.8685,51.7452 10.0272,51.9067 10.3601))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013354-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.28749515.v1
title: <b>A rare case report of neuro-brucellosis with Concurrence of depression, visual impairment, bilateral Sensorineural hearing loss, and paraplegia</b>

description: Anonymized brain and spinal cord Magnetic Resonance Imaging (MRI) scans in DICOM format from three time points ( 2019, 2021, 2023) for the patient presented in the case report "<b>A rare case report of neuro-brucellosis with Concurrence of depression, visual impairment, bilateral Sensorineural hearing loss, and paraplegia</b>" (Manuscript ID: PNTD-D-24-01757). Data shared in compliance with ethical approval from Fasa University of Medical Sciences and patient informed consent.
DOI: 10.17632/f4x4262v8r
title: Functional Genotype-Phenotype Associations in Recessive Dystrophic Epidermolysis Bullosa - Supplemental Materials

description: Supplemental tables for "Functional Genotype-Phenotype Associations in Recessive Dystrophic Epidermolysis Bullosa" in the Journal of the American Academy of Dermatology by So et al. (2024).
DOI: 10.17632/v8s9nz948s
title: Human ileum, Visium

description: Visium experiments on a biopsy from the ileum of a human donor. Four adjacent 10 µm sections. Processed sequencing data from 10X Genomics Space Ranger version 1.0.0. The tissue was collected from a patient undergoing colorectal surgery after obtaining informed consent. The study protocol was approved by the Medical Ethics Committee of the University Hospitals Leuven (reference approval number: S62935).
DOI: 10.17632/wxw27gz8rj
title: Witwatersrand Basin_Mineral and Trace Elements Data

description: The Witwatersrand basin in South Africa comprises unrehabilitated mining waste tailings characterised by unbalanced content of trace elements including Fe, S, Cu, Mn, Cr(t), Zn, Ni, Co, Mo, and P. To assess the quality of soil from the abandoned historical gold mine tailings, the geochemical, pH, and electrical conductivity data were generated from 21 soil samples. The data show a significantly low pH ranging from 1.9 to 5.3 and electrical conductivity ranging from 43 to 679 mS/m. A concentration factor expressed as the ratio of the concentration of trace metals in the samples to the concentration of trace metals in the background soil, used together with geoaccumulation index (Igeo) show that the investigated sites comprise elevated Cu content in the tailings than in the uncontaminated crustal background soil.
DOI: 10.17632/r3cpjtzjnr
title: Air Pollution and Healthcare Use

description: Replication package for the paper "Air Pollution, Health Care Use, and Inequality: Evidence from China"
DOI: 10.6084/m9.figshare.16847146.v1
title: Pinus tabuliformis gene space annotation

description: Pinus tabuliformis gene space annotation using large scale RNA-seq data including 760 biological samples spanning across 11 different organs/tissues subjected to various treatments and conditions.
DOI: 10.6084/m9.figshare.20268090.v3
title: Species list of ground beetles in the SPEEDY project

description: List of captured ground beetle species with their assigned dispersal class (Dispersal: SW = short-winged; WD = wing-dimorphic; LW = long-winged), presence at the number of sites with low (S_Low, <em>n</em> = 27), medium (S_Med, <em>n</em> = 27) and high (S_High, <em>n</em> = 27) urbanization, average abundance in low (N_Low), intermediate (N_Med) and highly (N_High) urbanized sites, and estimated difference (<strong>β</strong>-est.) and associated p-value (P) in their abundance between low or high urbanized sites based on a negative binomial linear model. Species are listed in alphabetical order.
DOI: 10.17632/r5snpvg5ty
title: Genome wide association study and identification of a protective missense variant on lipoprotein(a) concentration - GWAS summary statistics data files

description: GWAS summary statistics data files related to the article "Genome wide association study and identification of a protective missense variant on lipoprotein(a) concentration" by Said et al.