cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10026219
title: Results of differential expression analysis for the manuscript "N-of-one differential gene expression without control samples using a deep generative model"

description: Output files for the differential gene expression analysis in the manuscript "N-of-one differential gene expression without control samples using a deep generative model".  The zip file contains three folders with the results for DESeq2 and the DGD (named NB-GMM in the folders).
- The folder  False_positives_Fig4B contains the results presented in figure 4B of the manuscript. The file False_positive_single_vs_all.csv contains the results for the one-vs-all experiments. The file False_positive_5_vs_all.csv contains the results for the 5-vs-all experiments.
- The folder enrichment_plots contains the results presented in figure 4C of the manuscript. Each subfolder (e.g. Basal, HER2E, LumA, LumB) contain the differential expression analysis results for each breast cancer subtype.
- The folder fig5 contains the results presented in figure 5 of the manuscript. The results for each cancer are presented in a folder.
DOI: 10.5281/zenodo.10026218
title: Results of differential expression analysis for the manuscript "N-of-one differential gene expression without control samples using a deep generative model"

description: Output files for the differential gene expression analysis in the manuscript "N-of-one differential gene expression without control samples using a deep generative model".  The zip file contains three folders with the results for DESeq2 and the DGD (named NB-GMM in the folders).
- The folder  False_positives_Fig4B contains the results presented in figure 4B of the manuscript. The file False_positive_single_vs_all.csv contains the results for the one-vs-all experiments. The file False_positive_5_vs_all.csv contains the results for the 5-vs-all experiments.
- The folder enrichment_plots contains the results presented in figure 4C of the manuscript. Each subfolder (e.g. Basal, HER2E, LumA, LumB) contain the differential expression analysis results for each breast cancer subtype.
- The folder fig5 contains the results presented in figure 5 of the manuscript. The results for each cancer are presented in a folder.
DOI: 10.34740/kaggle/dsv/6748136
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.34740/kaggle/dsv/6748147
title: UNET Lung Segmentation Weights for Chest X Rays
DOI: 10.5258/soton/d2824
title: Dataset supporting the University of Southampton Doctoral Thesis "A platform to investigate the neuronal determinants of APOE genotype on neuron function".

description: Dataset supporting the University of Southampton Doctoral Thesis "A platform to investigate the neuronal determinants of APOE genotype on neuron function". The dataset includes raw data for RT-PCR, NanoString, ATP levels for iPSC derived neurons 4-week timecourse and 18-hour KA treatment. The data is presented in Excel and CSV files.
DOI: 10.21227/hmwf-vx26
title: Delsys Trigno EMG Walking Dataset

description: This dataset protocol details the acquisition of a surface electromyography (sEMG) dataset from the Tibialis Anterior (TA) and Gastrocnemius Lateralis (GL) muscles of 20 healthy adults, with an equal distribution of 10 male and 10 female participants. The data was collected using the Delsys Trigno wireless EMG system during a 30-second walking session. Proper electrode placement on the specified muscles was ensured for accurate signal capture. Ethical considerations were addressed, with approval from the Institutional Review Board and informed consent from participants. The resulting dataset, securely stored and anonymized for confidentiality, will serve as a valuable resource for research in biomedical and biomechanics.
DOI: 10.48544/8275bb71-3998-4d19-8da9-87d468115722
title: 4*4 PitStop methode voor pop-up  professionele (leer)netwerken
DOI: 10.18167/dvn1/gitsrp
title: Reducing antimicrobial use in chicken production in Vietnam

description: Antimicrobial resistance is one of the major public health issues and solutions to reduce its usage are urgently needed. This study aims to understand the transition process of Vietnamese chicken farmers toward lower antimicrobial usage (AMU). Semi-structured interviews were conducted with 18 farmers and analysed through thematic analysis in 2021-2022. Motivations and barriers to reduce AMU were identified as well as local solutions.
DOI: 10.5281/zenodo.10020269
title: Data for Consistent greenhouse accounting identifies forests and land use as crucial determinants of climate

description: Data supporting the article Wedderburn-Bisshop, G. Consistent greenhouse accounting identifies forests and land use as crucial determinants of climate
DOI: 10.5281/zenodo.10020268
title: Data for Consistent greenhouse accounting identifies forests and land use as crucial determinants of climate

description: Data supporting the article Wedderburn-Bisshop, G. Consistent greenhouse accounting identifies forests and land use as crucial determinants of climate
DOI: 10.5281/zenodo.10026537
title: VОLЕYBОL O'YINIGA DASTLABKI O'RGATISH USULLARI (11-12 YOSH O'G'IL BOLALAR UCHUN)

description: Ushbu ilmiy maqolada yosh voleybolchilarning dastlabki o'rgatishni tashkil etish va mashg'ulotni mazmuni, vazifalari, vositalari hamda mashg'ulot olib borish masalalari yoritilgan.
DOI: 10.5281/zenodo.10026536
title: VОLЕYBОL O'YINIGA DASTLABKI O'RGATISH USULLARI (11-12 YOSH O'G'IL BOLALAR UCHUN)

description: Ushbu ilmiy maqolada yosh voleybolchilarning dastlabki o'rgatishni tashkil etish va mashg'ulotni mazmuni, vazifalari, vositalari hamda mashg'ulot olib borish masalalari yoritilgan.
DOI: 10.5281/zenodo.10026545
title: УСОВЕРШЕНСТВОВАНИЕ ХИРУРГИЧЕСКОГО МЕТОДА ЛЕЧЕНИЯ ПРИ ПЕРЕЛОМАХ ГРУДОПОЯСНИЧНОГО ОТДЕЛА ПОЗВОНОЧНИКА

description: В статье освещены актуальность современного хирургического лечения острых позвоночно-спинальных травм грудно-поясничного отдела позвоночника в нейрохирургической практике. Уделено внимание оценку характера и механизма повреждения позвоночно двигательного сегмента и уточнено истинное состояние спинного мозга на уровне повреждения. Проанализированы результаты и лечение 45 больных с различными повреждениями грудно-поясничного отдела позвоночника в отделение нейрохирургии Бухарского филиала РНЦЭМП в период с 2015 по 2018 г. Проведен сравнительный анализ клинико-неврологического статуса больных после стабилизации позвоночно-двигательного сегмента до и после операции.
DOI: 10.5281/zenodo.10026544
title: УСОВЕРШЕНСТВОВАНИЕ ХИРУРГИЧЕСКОГО МЕТОДА ЛЕЧЕНИЯ ПРИ ПЕРЕЛОМАХ ГРУДОПОЯСНИЧНОГО ОТДЕЛА ПОЗВОНОЧНИКА

description: В статье освещены актуальность современного хирургического лечения острых позвоночно-спинальных травм грудно-поясничного отдела позвоночника в нейрохирургической практике. Уделено внимание оценку характера и механизма повреждения позвоночно двигательного сегмента и уточнено истинное состояние спинного мозга на уровне повреждения. Проанализированы результаты и лечение 45 больных с различными повреждениями грудно-поясничного отдела позвоночника в отделение нейрохирургии Бухарского филиала РНЦЭМП в период с 2015 по 2018 г. Проведен сравнительный анализ клинико-неврологического статуса больных после стабилизации позвоночно-двигательного сегмента до и после операции.
DOI: 10.18167/dvn1/gbfydq
title: Inventaire à dire d'acteurs des ressources ligneuses de la Forêt Communautaire COPAL (Cameroun)

description: Inventaire des essences ligneuses commerciales dans la Forêt Communautaire de la COPAL en recourant aux dires des propriétaires coutumiers volontaires. Liste des variables du jeu de données : Village : nom du village Date inventaire Numéro anonymisé du propriétaire Age : Âge du propriétaire Nom du lignage Type d'espace : Cacaoyère, forêt ou jachère Essence : Nom pilote de l'espèce (classification ATIBT) Diamètre : Classe de diamètre en cm (classe 50 pour [50-60[) Nombre de tiges : Distance à pied (en minute) : Distance depuis le village Coord. X : Longitude Coord. Y : Latitude
DOI: 10.18167/dvn1/wd1uc2
title: PADI-web corpus used for the EpidBioELECTRA approach

description: This dataset contains a set of news articles in English related to animal disease outbreaks, that have been used to train and evaluate EpidBioELECTRA epidemiological classifier and explainer. It is composed of 70,707 articles in csv format found in several folders (relevant folder contains 34,015 news articles labelled relevant, while irrelevant folder contains 36,692 irrelevant articles), with information about the article itself (publication date, title, content, url, etc.). Thematic feature folder contains relevant and irrelevant labelled thematic features (disease, host, location, cases, etc) as contained in relevant and irrelevant documents by sentence id organized in year and month of the article. These labels were machine generated by PADIWeb classifier.
DOI: 10.3886/e194602
title: The role of capital and productivity in accounting for income differences since 1913

description: This paper studies the proximate determinants of differences in output per worker across countries since 1913. We provide a new long-term perspective by developing a novel dataset with information on produced capital for 33 countries that covers most of the global income distribution. Using development accounting analysis, we find a large shift in the proximate determinants of cross-country income inequality during the 20th century. The contribution of produced capital to cross-country income variation declined from 29% to 11%, while that for productivity rose from 47% to 72%. Thus, the current predominant role of productivity in accounting for income differences is quite exceptional from a historical perspective. We draw on these findings to review various strands of the literature and offer some hypothesis about the rising relative importance of TFP for comparative economic performance. We conclude that differences in technological adoption rates and efficiency are the primer drivers of the decreasing relative importance of capital deepening for cross-country income inequality, rather than factor input mismeasurement.
DOI: 10.3886/e194602v1
title: The role of capital and productivity in accounting for income differences since 1913

description: This paper studies the proximate determinants of differences in output per worker across countries since 1913. We provide a new long-term perspective by developing a novel dataset with information on produced capital for 33 countries that covers most of the global income distribution. Using development accounting analysis, we find a large shift in the proximate determinants of cross-country income inequality during the 20th century. The contribution of produced capital to cross-country income variation declined from 29% to 11%, while that for productivity rose from 47% to 72%. Thus, the current predominant role of productivity in accounting for income differences is quite exceptional from a historical perspective. We draw on these findings to review various strands of the literature and offer some hypothesis about the rising relative importance of TFP for comparative economic performance. We conclude that differences in technological adoption rates and efficiency are the primer drivers of the decreasing relative importance of capital deepening for cross-country income inequality, rather than factor input mismeasurement.
DOI: 10.3886/e194602v2
title: The role of capital and productivity in accounting for income differences since 1913

description: This paper studies the proximate determinants of differences in output per worker across countries since 1913. We provide a new long-term perspective by developing a novel dataset with information on produced capital for 33 countries that covers most of the global income distribution. Using development accounting analysis, we find a large shift in the proximate determinants of cross-country income inequality during the 20th century. The contribution of produced capital to cross-country income variation declined from 29% to 11%, while that for productivity rose from 47% to 72%. Thus, the current predominant role of productivity in accounting for income differences is quite exceptional from a historical perspective. We draw on these findings to review various strands of the literature and offer some hypothesis about the rising relative importance of TFP for comparative economic performance. We conclude that differences in technological adoption rates and efficiency are the primer drivers of the decreasing relative importance of capital deepening for cross-country income inequality, rather than factor input mismeasurement.
DOI: 10.5281/zenodo.10026400
title: Serial Dependence in face-gender classification revealed in low-beta frequency EEG

description: Dataset and MATLAB scripts for publication. Contact giacomo.ranieri@unifi.it for any additional information.
DOI: 10.5281/zenodo.10026399
title: Serial Dependence in face-gender classification revealed in low-beta frequency EEG

description: Dataset and MATLAB scripts for publication. Contact giacomo.ranieri@unifi.it for any additional information.
DOI: 10.5281/zenodo.10026559
title: THE INFLUENCE OF EXAM-RELATED STRESS ON STUDENTS' LIFE PRODUCTIVITY

description: adad
DOI: 10.5281/zenodo.10026558
title: THE INFLUENCE OF EXAM-RELATED STRESS ON STUDENTS' LIFE PRODUCTIVITY

description: adad
DOI: 10.5281/zenodo.7940377
title: Compton y-parameter map of thermal SZ effect from Planck PR4 data

description: This dataset hosts the results and processing data from the paper "An improved Compton parameter map of thermal Sunyaev-Zeldovich effect from Planck PR4 data", arXiv:2305.10193. Please cite this paper, should you use the PR4 NILC y-map. Contact: chandran@ifca.unican.es
DOI: 10.5281/zenodo.8383587
title: De novo transcriptome assembly of a lipoxygenase knock-down strain in the diatom Pseudo-nitzschia arenysensis

description: We generated knock-down mutants for the LOX gene of the diatom Pseudo-nitzschia arenysensis to alter the synthesis of oxylipins and functionally investigate the mechanism of action of these metabolites in diatoms. Here, we present the functional classification of the transcript sequences obtained from the de novo assembly of RNA-seq data obtained both from the silenced and wild-type P. arenysensis strains.
DOI: 10.5281/zenodo.10026588
title: GAZDAN XAVFLI ISHLARNI XAVFSIZ OLIB BORISHDAGI MUAMMOLAR VA ULARNING YECHIMLARI.

description: Ushbu maqolada texnika xavfsizligi ishlarini to'g'ri tashkil etish, xavfli gaz ishlarini bajarishda xavfsizlik choralari, ularni bartaraf etish to'g'risida ma'lumot berilgan.
DOI: 10.5281/zenodo.10026589
title: GAZDAN XAVFLI ISHLARNI XAVFSIZ OLIB BORISHDAGI MUAMMOLAR VA ULARNING YECHIMLARI.

description: Ushbu maqolada texnika xavfsizligi ishlarini to'g'ri tashkil etish, xavfli gaz ishlarini bajarishda xavfsizlik choralari, ularni bartaraf etish to'g'risida ma'lumot berilgan.
DOI: 10.6084/m9.figshare.24408427
title: D7&D8

description: D7&D8
DOI: 10.6084/m9.figshare.24408427.v2
title: D7&D8

description: D7&D8
DOI: 10.6084/m9.figshare.24408427.v1
title: D7&D8

description: D7&D8
DOI: 10.5258/soton/d2709
title: Dataset supporting the publication "A high-throughput analysis of high-resolution X-Ray CT images of stems of olive and citrus plants resistant and susceptible to Xylella fastidiosa".

description: Data associated with and used in the production of the scientific paper "A high-throughput analysis of high-resolution X-Ray CT images of stems of olive and citrus plants resistant and susceptible to Xylella fastidiosa". This data set contains the reconstructed image stacks of all scans (1um tomography and zoom tomography). Each folder consists of 1800 8bit tiff images. The dataset is 256GB and can be requested via https://library.soton.ac.uk/datarequest. There are no restrictions on access for requestors (CC-BY). This research project has been funded by NE/S00720/1.
DOI: 10.18167/dvn1/a4oyru
title: Dioscorea alata orthologous groups identified by comparative genomics approach

description: Yams are important tubers widely consumed in developing countries in various forms, mainly boiled, pounded and fried. Tuber quality is a key criterion for acceptance by the various actors in the value chain. However, the genetics of yam tuber quality has not yet been comprehensively investigated. Given this lack of knowledge, we used population genomics and candidate gene association approaches to unravel the genetic basis of the three main quality attributes of boiled yam, namely texture, starch content and colour indices. We re-sequenced the whole genome of 127 yam genotypes with different quality attributes, and performed an enrichment of the already available functional genome annotation using comparative genomics. Population genomics analysis highlighted three main genetic groups and 1,053 genes under selection. We focused this work on three known quality trait-related pathways: pectin, starch content and flavonoid biosynthesis, and inventoried in the genome all the structural genes related to those pathways by comparative genomics. We improved the functional annotation of the three pathways with 48% more genes. A total of 18 candidate genes containing genetic variants significantly associated with the target traits were detected, including eight genes that were also found under selection. The texture-related candidate genes were distributed between the pectin and starch pathways. Overall, the use of comparative genomics has allowed the generation of an unprecedented genomic resource. The improved functional annotation of the yam genome is a promising predictive tool for identifying other core genes associated with any trait of interest to meet the growing need and diversified demands for yams. To complement the set of Dioscorea alata annotated genes, a comparative genomics approach was employed using a comparison of 45 genomes of species from diverse plant lineages. The species were chosen based on their genomes, phylogenetic distribution along the tree of viridiplantae and in the use of plant-models. They belong to the monocotyledons and dicotyledons, encompassing 17 different clades. The orthology analysis resulted in a total of 58,916 ortholous groups (OG) from 1,706,645 proteins. The OG were first used in this study to complement the set of genes in pathways involved in yam tuber quality.
DOI: 10.7910/dvn/e8qtrc
title: YOLOv5_FPC-Extracted Four-Panel-Cartoon (FPC) from Chosun Ilbo Newspaper Archive

description: This dataset consists of 930 JPEG files, encompassing 935 Four-Panel-Cartoon (FPC) objects. These were identified from a larger set of 47,777 files in the Chosun Ilbo Newspaper Digital Archives covering the period from 1920 to 1940, which can be accessed at https://newslibrary.chosun.com/. The image extraction process was automated using the YOLOv5_FPC model, a fine-tuned iteration of the YOLOv5 model
DOI: 10.5517/ccdc.csd.cc2cmqpf
title: CCDC 2193705: Experimental Crystal Structure Determination

description: Related Article: Xihong Wang, Chi Feng, Julong Jiang, Satoshi Maeda, Koji Kubota, Hajime Ito|2023|Nat.Commun.|14|5561|doi:10.1038/s41467-023-41113-z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cmqqg
title: CCDC 2193706: Experimental Crystal Structure Determination

description: Related Article: Xihong Wang, Chi Feng, Julong Jiang, Satoshi Maeda, Koji Kubota, Hajime Ito|2023|Nat.Commun.|14|5561|doi:10.1038/s41467-023-41113-z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cmqrh
title: CCDC 2193707: Experimental Crystal Structure Determination

description: Related Article: Xihong Wang, Chi Feng, Julong Jiang, Satoshi Maeda, Koji Kubota, Hajime Ito|2023|Nat.Commun.|14|5561|doi:10.1038/s41467-023-41113-z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cmqsj
title: CCDC 2193708: Experimental Crystal Structure Determination

description: Related Article: Xihong Wang, Chi Feng, Julong Jiang, Satoshi Maeda, Koji Kubota, Hajime Ito|2023|Nat.Commun.|14|5561|doi:10.1038/s41467-023-41113-z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.18167/dvn1/lygts4
title: Replication Data for: Repellent activities against four Ascomycota species and Reticulitermes flavipes of acetonic extractives from sapwood to inner heartwood fractions of Cedrus Atlantica

description: The radial repartition of water/acetone extractives within the selected Atlas cedar tree (bark, sapwood, transition wood, outer heartwood and inner heartwood), at different tree height levels, were screened. HPLC analyses were performed, especially to characterized flavonoid compounds of these extractives fractions. The radial variation of the extractive composition obtained, highlighted the phenomenon of heartwood formation. Hypotheses on the metabolic pathways involved in the heartwood formation process of cedar wood were suggested, especially based on the occurrence and the radial evolution of (-)-catechin, (+)-taxifolin and flavan compounds. Then, the fungicidal and anti-termitic activities of the extracts were tested. The water/acetone extractives from the studied Cedrus atlantica showed a strong repellent activity against termites and a moderate antifungal activity against crops and fruits pathogens. Even if the sampling in this study was limited to a single tree, the results seem to bring out a potential valorisation of the extractives of the Atlas cedar, as wood preservatives and/or as biocontrol products against pathogens of ligneous agricultural crops.
DOI: 10.5517/ccdc.csd.cc2cmqtk
title: CCDC 2193709: Experimental Crystal Structure Determination

description: Related Article: Xihong Wang, Chi Feng, Julong Jiang, Satoshi Maeda, Koji Kubota, Hajime Ito|2023|Nat.Commun.|14|5561|doi:10.1038/s41467-023-41113-z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cmqvl
title: CCDC 2193710: Experimental Crystal Structure Determination

description: Related Article: Xihong Wang, Chi Feng, Julong Jiang, Satoshi Maeda, Koji Kubota, Hajime Ito|2023|Nat.Commun.|14|5561|doi:10.1038/s41467-023-41113-z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.