cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4491641
title: Attadapt

description: Source code and data for the article PONE-D-16-35677R1 "Task-Difficulty Homeostasis in Car Following Models: Experimental Validation Using Self-Paced Visual Occlusion". Archived copy of a gitlab repository.
DOI: 10.6084/m9.figshare.4491650.v1
title: Preceived Confidence_Female Condom

description: The data contains variables that captures transactional sex, perceived confidence and perception towards usage of female condom amongst female undergraduates in selected institutions of southwestern Nigeria.
DOI: 10.6084/m9.figshare.4491641.v2
title: Attadapt

description: Source code and data for the article PONE-D-16-35677R1 "Task-Difficulty Homeostasis in Car Following Models: Experimental Validation Using Self-Paced Visual Occlusion". Archived copy of a gitlab repository.
DOI: 10.6084/m9.figshare.4491629.v2
title: MultiCloud Resource Management using Apache Mesos with Apache Airavata

description: We discuss initial results and our planned approach for incorporating Apache Mesos based resource management that will enable design and development of scheduling strategies for Apache Airavata jobs so that they can be launched on multiple clouds, wherein several VMs do not have Public IP addresses. We present initial work and next steps on the design of a meta-scheduler for Apache Airavata, which uses Apache Mesos to present a unified view of resources available across several clouds and clusters. This meta-scheduler can potentially examine and identify the cases where multiple small jobs have been submitted by the same scientists and then redirect job from the same community account or user to different clusters. Our approach uses a NAT firewall to make cloud VMs, without a Public IP, visible to Mesos for the unified view.
DOI: 10.6084/m9.figshare.4491623.v2
title: Interactive Leaderboard for Requesting and Tracking Expensive Calculations of Optional Properties across a Database of Materials

description: Databases of crystalline compounds typically have core properties such as relaxed structure, energy of formation, etc. pre-computed and available to users. However, additional material properties such as full elastic tensor, band structure, etc. may be both not of interest to all users of the database and computationally expensive to determine. Furthermore, researchers interested in such properties may only be interested in their values for specific compounds or chemistries. To crowdsource prioritization of optional-property calculations, we built an interactive leaderboard that serves as a gateway to our cyberinfrastructure (CI) for queuing jobs and dynamically reassigning job priorities. Users browse an ordered list of queued jobs, filter by chemistry for materials that are missing the property of interest, vote on existing or new jobs, and receive email notification when voted-on material properties are online. Here we will detail the use case of full elastic tensor calculations for the Materials Project, though the leaderboard interface can be run as a standalone web service and customized for contexts other than computational materials science.
DOI: 10.6084/m9.figshare.4491641.v1
title: New draft item

description: Source code and data for the article PONE-D-16-35677R1 "Task-Difficulty Homeostasis in Car Following Models: Experimental Validation Using Self-Paced Visual Occlusion". Archived copy of a gitlab repository.
DOI: 10.6084/m9.figshare.4491521
title: DFToutputfilesAblittetal2016

description: These files represent the output files of calculations which contributed towards the publication 'The Origin of Uniaxial Negative Thermal Expansion in Layered Perovskites' by Chris Ablitt et al. DFT calculations were performed using CASTEP version 7.03.<br>
DOI: 10.6084/m9.figshare.4491620.v2
title: Effective and interactive dissemination of diffusion data using MPContribs, plus a demo of UW/SI2 and MPContribs

description: We will describe in this talk how the general approach taken by MPContribs solves the very specific challenges faced by the UW researchers in effectively disseminating their data to the public. The presented solution developed in the collaborative effort between UW and LBNL is the first to demonstrate how MPContribs can empower research groups through the rapid development and deployment of customized but MP-compatible web applications either using on-site or MP resources. It will also be shown how these efforts directly translate into solutions for the ongoing collaboration with researchers at the Advanced Light Source at LBNL [1] in which we aim to develop a processing pipeline for experimental XAS data from the beamline computer to integrated analysis web apps on MP.In our demo portion, we show the integration of the UW/SI2 workflow with MPContribs and JupyterHub. See [2] for a quick impression of the general functionality for the UW/SI2 use case. The video and the demo illustrate how MPContribs can be used to contribute, explore and feed data to the generic contribution details pages as well as a project-specific web application.[1] MPContribs, arXiv:1510.05024, arXiv:1510.05727, MRS Spring 2016[2] https://www.youtube.com/watch?v=wbWde5StHnU (3:43min)
DOI: 10.6084/m9.figshare.4491518
title: Raw pixel and distortion values at 8x8 sub-block level

description: Raw pixel and distortion values at 8x8 sub-block level
DOI: 10.6084/m9.figshare.4491470
title: Raw and sampled prediction data used to model rate control activity assessment

description: Raw and sampled prediction data used to model rate control activity assessment<br>Raw data is in two forms, as is and unique instances.The sampled form is limited to 30k observations using a pseudo random number generator set at 42 :).
DOI: 10.6084/m9.figshare.4491521.v2
title: DFToutputfilesAblittetal2016

description: These files represent the output files of calculations which contributed towards the publication 'The Origin of Uniaxial Negative Thermal Expansion in Layered Perovskites' by Chris Ablitt et al. DFT calculations were performed using CASTEP version 7.03.<br>
DOI: 10.6084/m9.figshare.4491518.v1
title: Raw pixel and distortion values at 8x8 sub-block level

description: Raw pixel and distortion values at 8x8 sub-block level
DOI: 10.6084/m9.figshare.4491521.v1
title: DFToutputfilesAblittetal2016

description: These files represent the output files of calculations which contributed towards the publication 'The Origin of Uniaxial Negative Thermal Expansion in Layered Perovskites' by Chris Ablitt et al. DFT calculations were performed using CASTEP version 7.03.<br>
DOI: 10.6084/m9.figshare.4491470.v1
title: Raw and sampled prediction data used to model rate control activity assessment

description: Raw and sampled prediction data used to model rate control activity assessment<br>Raw data is in two forms, as is and unique instances.The sampled form is limited to 30k observations using a pseudo random number generator set at 42 :).
DOI: 10.6084/m9.figshare.4491464
title: Raw pixel distortion observations and calculated values both whole and sampled for proposed sum of absolute square differences (SASD)

description: Raw pixel distortion observations and calculated values both whole and sampled for proposed sum of absolute square differences (SASD)<br><br><br><br>
DOI: 10.6084/m9.figshare.4491452
title: iris.csv

description: classical iris dataset
DOI: 10.6084/m9.figshare.4491434
title: Sampled raw pixel data, 30k, taken at prediction Hadamard 8x8 and filtered data following pre-processing

description: Sampled raw pixel data, 30k, taken at prediction Hadamard 8x8 and filtered data following proposed pre-processing<br><br>
DOI: 10.6084/m9.figshare.4491434.v1
title: Sampled raw pixel data, 30k, taken at prediction Hadamard 8x8 and filtered data following pre-processing

description: Sampled raw pixel data, 30k, taken at prediction Hadamard 8x8 and filtered data following proposed pre-processing<br><br>
DOI: 10.6084/m9.figshare.4491464.v1
title: Raw pixel distortion observations and calculated values both whole and sampled for proposed sum of absolute square differences (SASD)

description: Raw pixel distortion observations and calculated values both whole and sampled for proposed sum of absolute square differences (SASD)<br><br><br><br>
DOI: 10.6084/m9.figshare.4491290
title: Supplementary Material for: Discrete Distribution Based on Compound Sum to Model Dental Caries Count Data

description: Methods for analysing dental caries and associated risk indicators have evolved considerably in recent decades. The use of zero-inflated or hurdle models is increasing so as to take account of the decayed, missing, and filled teeth (DMFT) distribution, which is positively skewed and has a high proportion of zero scores. However, there is a need to develop new statistical models that involve pragmatic biological considerations on dental caries in epidemiological surveys. In this paper, we show that the zero-inflated and the hurdle models can both be expressed as a compound sum. Using the same compound sum, we then present the generalized negative binomial (GNB) distribution for dental caries count data, and provide a numerical application using the data of the EPIPAP study. The GNB model generates the best score functions while handling the lifetime dental caries disease process better. In conclusion, the GNB model suits the nature of some count data, in particular when structural zeros are unlikely to occur and when several latent spells can lead to new countable events. For these reasons, the use of the GNB distribution appears to be relevant for the modelling of dental caries count data.
DOI: 10.6084/m9.figshare.4491215
title: 23andMe hg37

description: 23andMe genotypes human reference 37 from the Corpas family.
DOI: 10.6084/m9.figshare.4491182
title: UK dietary exposure to PCDD/Fs, PCBs, PBDD/Fs, PBBs and PBDEs: comparison of results from 24-h duplicate diets and total diet studies

description: Chemicals in food are monitored to check for compliance with regulatory limits and to evaluate trends in dietary exposures, among other reasons. This study compared two different methods for estimating human dietary exposure to lipophilic persistent organic pollutants (POPs) during 2011/12: (1) the 2012 Total Diet Study (TDS) conducted by the UK Food Standards Agency (FSA) and (2) a 24-h duplicate diet (DD) study of 20 adults from the North East of England. The equivalence of the two approaches was assessed; anything less than an order of magnitude could be considered reasonable and within three-fold (equivalent to 0.5 log) as good. Adult dietary exposure estimates derived from the DD study for both average and high-level (97.5th percentile) consumers compared well with those from the TDS. Estimates from the DD study when compared with those from the TDS were within 10% for P97.5 for total PCDD/F/PCB with divergence increasing to a factor of 3.4 for average BDE-209. Most estimates derived from the TDS were slightly higher than those derived from the DD. Comparison with earlier UK TDS data over the last 30 years or so confirmed a gradual decline in levels of PCDD/F/PCBs in food. Such comparisons also indicated peaks in dietary exposure to ∑PBDE (excluding BDE-209) between 2000 and 2005. Exposure estimates for all measured compounds using both TDS and DD data were found to be within recommended tolerable daily intakes where available or within acceptable margins of exposure.
DOI: 10.6084/m9.figshare.4491182.v1
title: UK dietary exposure to PCDD/Fs, PCBs, PBDD/Fs, PBBs and PBDEs: comparison of results from 24-h duplicate diets and total diet studies

description: Chemicals in food are monitored to check for compliance with regulatory limits and to evaluate trends in dietary exposures, among other reasons. This study compared two different methods for estimating human dietary exposure to lipophilic persistent organic pollutants (POPs) during 2011/12: (1) the 2012 Total Diet Study (TDS) conducted by the UK Food Standards Agency (FSA) and (2) a 24-h duplicate diet (DD) study of 20 adults from the North East of England. The equivalence of the two approaches was assessed; anything less than an order of magnitude could be considered reasonable and within three-fold (equivalent to 0.5 log) as good. Adult dietary exposure estimates derived from the DD study for both average and high-level (97.5th percentile) consumers compared well with those from the TDS. Estimates from the DD study when compared with those from the TDS were within 10% for P97.5 for total PCDD/F/PCB with divergence increasing to a factor of 3.4 for average BDE-209. Most estimates derived from the TDS were slightly higher than those derived from the DD. Comparison with earlier UK TDS data over the last 30 years or so confirmed a gradual decline in levels of PCDD/F/PCBs in food. Such comparisons also indicated peaks in dietary exposure to ∑PBDE (excluding BDE-209) between 2000 and 2005. Exposure estimates for all measured compounds using both TDS and DD data were found to be within recommended tolerable daily intakes where available or within acceptable margins of exposure.
DOI: 10.6084/m9.figshare.4491143.v1
title: Aneks 2 (2016)

description: A number of citations of scientific publications which were published in 2015 and earlier. The citations were observed and counted within an empirical study conducted on the basis of the periodicals listed in Appendix 1 (2016).
DOI: 10.6084/m9.figshare.4491143.v2
title: Aneks 2 (2016)

description: A number of citations of scientific publications which were published in 2015 and earlier. The citations were observed and counted within an empirical study conducted on the basis of the periodicals listed in Appendix 1 (2016).
DOI: 10.6084/m9.figshare.4491107
title: Clinical reasoning viva examination

description: Raw data for the marking rubric for the viva examination of clinical reasoning in osteopathy
DOI: 10.6084/m9.figshare.4491101
title: Scaled Dataset.xlsx

description: The partner company’s historical data could be utilized in developing a data-driven prediction model with project division details as its inputs and project division labor-hours as the desired output. The BIM models contain 42 design features and 1559 records, each record denoting a division of fabrication. The BIM design features are listed in Table 1. Labor-hours spent on each division were extracted from job costing databases serving as the output parameter in the regression model. Although the variables in Table 1 are all considered related, there are certain inter-correlations between them and some variables can be explained by others. For instance, material length and weight are highly correlated; by knowing one, the other can be deduced. Therefore, a variable selection technique is instrumental in removing these inter-correlations in an analytical manner. It is noteworthy that the dataset was linearly scaled prior to performing analyses in order not to reveal sensitive information of the partner company without distorting patterns and relationships inherent in the data.
DOI: 10.6084/m9.figshare.4491107.v1
title: Clinical reasoning viva examination

description: Raw data for the marking rubric for the viva examination of clinical reasoning in osteopathy
DOI: 10.6084/m9.figshare.4491101.v1
title: Scaled Dataset.xlsx

description: The partner company’s historical data could be utilized in developing a data-driven prediction model with project division details as its inputs and project division labor-hours as the desired output. The BIM models contain 42 design features and 1559 records, each record denoting a division of fabrication. The BIM design features are listed in Table 1. Labor-hours spent on each division were extracted from job costing databases serving as the output parameter in the regression model. Although the variables in Table 1 are all considered related, there are certain inter-correlations between them and some variables can be explained by others. For instance, material length and weight are highly correlated; by knowing one, the other can be deduced. Therefore, a variable selection technique is instrumental in removing these inter-correlations in an analytical manner. It is noteworthy that the dataset was linearly scaled prior to performing analyses in order not to reveal sensitive information of the partner company without distorting patterns and relationships inherent in the data.
DOI: 10.6084/m9.figshare.4491008
title: Bartlett, M. L., & McCarley, J. S. (2017). Benchmarking Aided Decision Making in a Signal Detection Task. Human Factors, 59, 881–900.

description: Data files (csv), R markdown scripts (RMD), and knit outputs (HTML) for the three experiments, aggregated and cross-experiment analyses, and model comparisons.<br>
DOI: 10.6084/m9.figshare.4491008.v1
title: Bartlett & McCarley HFJ submission 2016,"Benchmarking aided decision making in a signal detection task"

description: Data files (csv), R markdown scripts (RMD), and knit outputs (HTML) for the three experiments, aggregated and cross-experiment analyses, and model comparisons.<br>
DOI: 10.6084/m9.figshare.4490831
title: AS med match PLOS one.xlsx

description: Co-Occurrence of Asthma and Nephrolithiasis in Children
DOI: 10.6084/m9.figshare.4490834
title: asthma stone PLOS one.xlsx

description: Co-Occurrence of Asthma and Nephrolithiasis in Children
DOI: 10.6084/m9.figshare.4490834.v1
title: asthma stone PLOS one.xlsx

description: Co-Occurrence of Asthma and Nephrolithiasis in Children
DOI: 10.6084/m9.figshare.4490828
title: some data access records which obey zipf laws

description: Based on user’s behaviors, the relationships among all data can be mined and so to guide the system's actions, including data placement strategies, data caching strategies and caching replacement strategies. These data access records are simulated based on a zipf laws. All data are labelled with a natural number and all data access records are simulated based on different data size and different distributed parameters.
DOI: 10.6084/m9.figshare.4490831.v1
title: AS med match PLOS one.xlsx

description: Co-Occurrence of Asthma and Nephrolithiasis in Children
DOI: 10.6084/m9.figshare.4490828.v2
title: some data access records which obey zipf laws

description: Based on user’s behaviors, the relationships among all data can be mined and so to guide the system's actions, including data placement strategies, data caching strategies and caching replacement strategies. These data access records are simulated based on a zipf laws. All data are labelled with a natural number and all data access records are simulated based on different data size and different distributed parameters.
DOI: 10.6084/m9.figshare.4490798
title: "A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis" - Source and Intermediate Files Supplement

description: Analysis scripts and intermediate files for Taroni, et al. "A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis." See README for more information.<br>Expression data available at Zenodo (see references).
DOI: 10.6084/m9.figshare.4490828.v1
title: some data access records which obey zipf laws

description: Based on user’s behaviors, the relationships among all data can be mined and so to guide the system's actions, including data placement strategies, data caching strategies and caching replacement strategies. These data access records are simulated based on a zipf laws. All data are labelled with a natural number and all data access records are simulated based on different data size and different distributed parameters.
DOI: 10.6084/m9.figshare.4490798.v1
title: "A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis" - Source and Intermediate Files Supplement

description: Analysis scripts and intermediate files for Taroni, et al. "A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis." See README for more information.<br>Expression data available at Zenodo (see references).
DOI: 10.6084/m9.figshare.4490771.v2
title: Enabling Interactive Notebooks on Supercomputers with Jupyterhub

description: Interactive notebook systems such as Jupyter represent a new paradigm in web science gateways that can combine interactive code execution with data analysis and exploration. In our work we demonstrate how one can create and manage interactive notebooks in a multi-user supercomputing environment using the Jupyterhub platform. We describe our architecture along with custom modules that we developed for Jupyterhub to manage authentication, notebook execution and interaction with the job queueing system. We illustrate the power of this system through the OpenMSI use case, and outline future directions for this effort.
DOI: 10.6084/m9.figshare.4490726.v2
title: Analysis of nanoHUB.org from a Business Perspective

description: Science Gateways are typically implemented by scientists and cyberinfrastructure experts to serve a specific, externally-funded scientific focus. Sustainability of those gateways and the knowledge and tools they contain continues to be of strong interest to both the gateways and the funding agencies that support their creation and initial operation. nanoHUB.org is an established gateway entering its 15th year of operation and now serving over 1.4 million visitors annually. The leadership at nanoHUB have utilized a partnership with Purdue’s Krannert School of Management to collaborate on examining nanoHUB from a business perspective. The results of these collaborations are outlined in this extended abstract and will be expanded upon in the corresponding presentation.
DOI: 10.6084/m9.figshare.4490621
title: Footage of feeding by the hairy-legged vampire bat Diphylla ecaudata refutes the hypothesis that this vampire bat sucks

description: Close footage taken of a captive <i>Diphylla ecaudata</i> feeding on a chicken near the cloaca. Filmed in Mexico in December, 2007. Chicken was held upside down. This footage refutes an argument by Greenhall (1988) in his chapter on feeding behavior in the book "The Natural History of Vampire Bats" (Greenhall & Schmidt, 1988, CRC Press). He writes on pages 127-128:<br>"The actual biting by <i>Diphylla</i> has never been described...Because of the difference in head morphology of <i>Desmodus</i> when compared to <i>Diphylla</i>, it is reasonable to surmise that the feeding behavior would be completely different...In viewing the photographs of <i>Diphylla</i>, both front and profile, noticing the broad and flexible lips, and keeping in mind the features of <i>Diphylla</i>, I speculate: that if the bat covered a wound made in the cloacal area with its lips and mouth, it could make an effective seal and then apply suction. <i>Diphylla</i> could feed in the simple, uncomplicated manner of "Dracula" not possible for <i>Desmodus</i> and <i>Diaemus</i>."<br>This footage shows <i>Diphylla ecaudata</i> using typical licking behavior to obtain blood from the bite. The wound is itself notable in being a clean "slice" wound rather than a crater-like wound resulting from a typical <i>Desmodus rotundus</i> bite. <br>The still image shows the position in which the bat attaches itself, with feet clinging to the tail feathers.