cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5q814v20
title: MassIVE Reanalysis RMSV000000355.1971 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TPD52 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5tx35840
title: MassIVE Reanalysis RMSV000000355.1958 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SEMA3B [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5kh0f18n
title: MassIVE Reanalysis RMSV000000355.1970 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, LEAP2 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5fq9q75f
title: MassIVE Reanalysis RMSV000000355.1969 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, LHFPL2 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c59z90f1p
title: MassIVE Reanalysis RMSV000000355.1973 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CNTNAP3 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c56688m77
title: MassIVE Reanalysis RMSV000000355.1979 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, LRRC55 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c52f7jt2m
title: MassIVE Reanalysis RMSV000000355.1980 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ARL8A [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5t14tr6h
title: MassIVE Reanalysis RMSV000000355.1966 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CSF1 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5xp6v571
title: MassIVE Reanalysis RMSV000000355.1974 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PKP2 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5jh3d48d
title: MassIVE Reanalysis RMSV000000355.1978 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, EPHB6 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5p843z2r
title: MassIVE Reanalysis RMSV000000355.1977 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, FAM98A [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5dr2pb5r
title: MassIVE Reanalysis RMSV000000355.1975 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, HAUS5 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c55717q62
title: MassIVE Reanalysis RMSV000000355.1982 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, EPHB2 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5901zj1x
title: MassIVE Reanalysis RMSV000000355.1985 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, MMP14 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c51g0hx2x
title: MassIVE Reanalysis RMSV000000355.1972 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, RBM25 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5ws8hp16
title: MassIVE Reanalysis RMSV000000355.1983 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, MAGEA3 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5s17sv7r
title: MassIVE Reanalysis RMSV000000355.1986 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CDH17 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6211553
title: Copernicus Digital Elevation Model (DEM) for Europe at 30 arc seconds (ca. 1000 meter) resolution derived from Copernicus Global 30 meter DEM dataset

description: Overview:<br> The Copernicus DEM is a Digital Surface Model (DSM) which represents the surface of the Earth including buildings, infrastructure and vegetation. The original GLO-30 provides worldwide coverage at 30 meters (refers to 10 arc seconds). Note that ocean areas do not have tiles, there one can assume height values equal to zero. Data is provided as Cloud Optimized GeoTIFFs. Note that the vertical unit for measurement of elevation height is meters. The Copernicus DEM for Europe at 30 arcsec (0:00:30 = 0.0083333333 ~ 1000 meter) in COG format has been derived from the Copernicus DEM GLO-30, mirrored on Open Data on AWS, dataset managed by Sinergise (https://registry.opendata.aws/copernicus-dem/). Processing steps:<br> The original Copernicus GLO-30 DEM contains a relevant percentage of tiles with non-square pixels. We created a mosaic map in VRT format and defined within the VRT file the rule to apply cubic resampling while reading the data, i.e. importing them into GRASS GIS for further processing. We chose cubic instead of bilinear resampling since the height-width ratio of non-square pixels is up to 1:5. Hence, artefacts between adjacent tiles in rugged terrain could be minimized: <code>gdalbuildvrt -input_file_list list_geotiffs_MOOD.csv -r cubic -tr 0.000277777777777778 0.000277777777777778 Copernicus_DSM_30m_MOOD.vrt </code> In order to reduce the spatial resolution to 30 arc seconds, weighted resampling was performed in GRASS GIS (using <code>r.resamp.stats -w</code> and the pixel values were scaled with 1000 (storing the pixels as integer values) for data volume reduction. In addition, a hillshade raster map was derived from the resampled elevation map (using <code>r.relief</code>, GRASS GIS). Eventually, we exported the elevation and hillshade raster maps in Cloud Optimized GeoTIFF (COG) format, along with SLD and QML style files. Projection + EPSG code:<br> Latitude-Longitude/WGS84 (EPSG: 4326) Spatial extent:<br> north: 82:00:30N<br> south: 18N<br> west: 32:00:30W<br> east: 70E Spatial resolution:<br> 30 arc seconds (approx. 1000 m) Pixel values:<br> meters * 1000 (scaled to Integer; example: value 23220 = 23.220 m a.s.l.) Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0 (r.resamp.stats -w; r.relief) Original dataset license:<br> https://spacedata.copernicus.eu/documents/20126/0/CSCDA_ESA_Mission-specific+Annex.pdf Processed by:<br> mundialis GmbH & Co. KG, Germany (https://www.mundialis.de/)
description: Acknowledgement: This study was partially funded by EU grant 874850 MOOD. The contents of this publication are the sole responsibility of the authors and don't necessarily reflect the views of the European Commission.
DOI: 10.5281/zenodo.6211552
title: Copernicus Digital Elevation Model (DEM) for Europe at 30 arc seconds (ca. 1000 meter) resolution derived from Copernicus Global 30 meter DEM dataset

description: Overview:<br> The Copernicus DEM is a Digital Surface Model (DSM) which represents the surface of the Earth including buildings, infrastructure and vegetation. The original GLO-30 provides worldwide coverage at 30 meters (refers to 10 arc seconds). Note that ocean areas do not have tiles, there one can assume height values equal to zero. Data is provided as Cloud Optimized GeoTIFFs. Note that the vertical unit for measurement of elevation height is meters. The Copernicus DEM for Europe at 30 arcsec (0:00:30 = 0.0083333333 ~ 1000 meter) in COG format has been derived from the Copernicus DEM GLO-30, mirrored on Open Data on AWS, dataset managed by Sinergise (https://registry.opendata.aws/copernicus-dem/). Processing steps:<br> The original Copernicus GLO-30 DEM contains a relevant percentage of tiles with non-square pixels. We created a mosaic map in VRT format and defined within the VRT file the rule to apply cubic resampling while reading the data, i.e. importing them into GRASS GIS for further processing. We chose cubic instead of bilinear resampling since the height-width ratio of non-square pixels is up to 1:5. Hence, artefacts between adjacent tiles in rugged terrain could be minimized: <code>gdalbuildvrt -input_file_list list_geotiffs_MOOD.csv -r cubic -tr 0.000277777777777778 0.000277777777777778 Copernicus_DSM_30m_MOOD.vrt </code> In order to reduce the spatial resolution to 30 arc seconds, weighted resampling was performed in GRASS GIS (using <code>r.resamp.stats -w</code> and the pixel values were scaled with 1000 (storing the pixels as integer values) for data volume reduction. In addition, a hillshade raster map was derived from the resampled elevation map (using <code>r.relief</code>, GRASS GIS). Eventually, we exported the elevation and hillshade raster maps in Cloud Optimized GeoTIFF (COG) format, along with SLD and QML style files. Projection + EPSG code:<br> Latitude-Longitude/WGS84 (EPSG: 4326) Spatial extent:<br> north: 82:00:30N<br> south: 18N<br> west: 32:00:30W<br> east: 70E Spatial resolution:<br> 30 arc seconds (approx. 1000 m) Pixel values:<br> meters * 1000 (scaled to Integer; example: value 23220 = 23.220 m a.s.l.) Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0 (r.resamp.stats -w; r.relief) Original dataset license:<br> https://spacedata.copernicus.eu/documents/20126/0/CSCDA_ESA_Mission-specific+Annex.pdf Processed by:<br> mundialis GmbH & Co. KG, Germany (https://www.mundialis.de/)
description: Acknowledgement: This study was partially funded by EU grant 874850 MOOD. The contents of this publication are the sole responsibility of the authors and don't necessarily reflect the views of the European Commission.
DOI: 10.25345/c5n87323d
title: MassIVE Reanalysis RMSV000000355.1992 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, FGD5 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5hh6c79n
title: MassIVE Reanalysis RMSV000000355.1987 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, FAM71F1 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6211701
title: Copernicus Digital Elevation Model (DEM) for Europe at 3 arc seconds (ca. 90 meter) resolution derived from Copernicus Global 30 meter DEM dataset

description: Overview:<br> The Copernicus DEM is a Digital Surface Model (DSM) which represents the surface of the Earth including buildings, infrastructure and vegetation. The original GLO-30 provides worldwide coverage at 30 meters (refers to 10 arc seconds). Note that ocean areas do not have tiles, there one can assume height values equal to zero. Data is provided as Cloud Optimized GeoTIFFs. Note that the vertical unit for measurement of elevation height is meters. The Copernicus DEM for Europe at 3 arcsec (0:00:03 = 0.00083333333 ~ 90 meter) in COG format has been derived from the Copernicus DEM GLO-30, mirrored on Open Data on AWS, dataset managed by Sinergise (https://registry.opendata.aws/copernicus-dem/). Processing steps:<br> The original Copernicus GLO-30 DEM contains a relevant percentage of tiles with non-square pixels. We created a mosaic map in VRT format and defined within the VRT file the rule to apply cubic resampling while reading the data, i.e. importing them into GRASS GIS for further processing. We chose cubic instead of bilinear resampling since the height-width ratio of non-square pixels is up to 1:5. Hence, artefacts between adjacent tiles in rugged terrain could be minimized: <code>gdalbuildvrt -input_file_list list_geotiffs_MOOD.csv -r cubic -tr 0.000277777777777778 0.000277777777777778 Copernicus_DSM_30m_MOOD.vrt </code> In order to reduce the spatial resolution to 3 arc seconds, weighted resampling was performed in GRASS GIS (using <code>r.resamp.stats -w</code> and the pixel values were scaled with 1000 (storing the pixels as integer values) for data volume reduction. In addition, a hillshade raster map was derived from the resampled elevation map (using <code>r.relief</code>, GRASS GIS). Eventually, we exported the elevation and hillshade raster maps in Cloud Optimized GeoTIFF (COG) format, along with SLD and QML style files. Projection + EPSG code:<br> Latitude-Longitude/WGS84 (EPSG: 4326) Spatial extent:<br> north: 82:00:30N<br> south: 18N<br> west: 32:00:30W<br> east: 70E Spatial resolution:<br> 3 arc seconds (approx. 90 m) Pixel values:<br> meters * 1000 (scaled to Integer; example: value 23220 = 23.220 m a.s.l.) Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0 (r.resamp.stats -w; r.relief) Original dataset license:<br> https://spacedata.copernicus.eu/documents/20126/0/CSCDA_ESA_Mission-specific+Annex.pdf Processed by:<br> mundialis GmbH & Co. KG, Germany (https://www.mundialis.de/)
description: Acknowledgements: This study was partially funded by EU grant 874850 MOOD. The contents of this publication are the sole responsibility of the authors and don't necessarily reflect the views of the European Commission.