cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7460729
title: Mono- and digalactosyldiacylglycerol composition of dinoflagellates. VIII. Temperature effects and a perspective on the curious case of <i>Karenia mikimotoi</i> as a producer of the unusual, ‘green algal’ fatty acid hexadecatetraenoic acid [16:4(n-3)]

description: Previous studies have shown that dinoflagellates with different plastid ancestries have distinct differences in the fatty acid compositions and regiochemistries of their chloroplast-associated galactolipids, mono- and digalactosyldiacylglycerol (MGDG and DGDG, respectively), thus reflecting plastid origin as a major factor in plastid membrane composition. Specifically, dinoflagellates with aberrant plastids (e.g. <i>Karenia brevis, Kryptoperidinium foliaceum</i> and <i>Lepidodinium chlorophorum</i>) possess certain MGDG- and DGDG-associated fatty acids which are not found in peridinin-containing dinoflagellates (the largest group of photosynthetic dinoflagellates with a red algal plastid ancestry which is thought to be an evolutionary precursor to aberrant plastids), but which are common to other algal groups. For example, hexadecatetraenoic acid (16:4(n-3)) is common to green algae and is found in the MGDG and DGDG of <i>L. chlorophorum</i>, which agrees with its green algal plastid ancestry, while hexadecatrienoic acid (16:3) and hexadecadienoic acid (16:2) are found in the MGDG and DGDG of <i>K. foliaceum</i>, which agrees with its diatom plastid ancestry. Notably, 16:4 has been found by others in the total fatty acids and galactolipids of <i>Karenia mikimotoi</i>, but in no other examined members of the Kareniaceae (all of which have plastids of haptophyte origin). However, these findings lack information as to the regiochemistry of 16:4. We have utilized positive-ion electrospray ionization/mass spectrometry (ESI/MS) and ESI/MS/MS to demonstrate that 16:4, which aside from <i>L. chlorophorum</i> is not found conclusively in the MGDG and DGDG of any other dinoflagellates examined to date irrespective of plastid ancestry, is found in <i>K. mikimotoi</i> as 18:5/16:4 (<i>sn</i>-1/<i>sn</i>-2 regiochemistry) MGDG and DGDG, and that its presence is not modulated (i.e. does not become more saturated) with an increase in growth temperature. Considering an aberrant pigment composition as described by others, we present a perspective where galactolipid-associated 16:4 in <i>K. mikimotoi</i> indicates a plastid ancestry more convoluted than for other members of the Kareniaceae.
DOI: 10.6084/m9.figshare.7460729.v1
title: Mono- and digalactosyldiacylglycerol composition of dinoflagellates. VIII. Temperature effects and a perspective on the curious case of <i>Karenia mikimotoi</i> as a producer of the unusual, ‘green algal’ fatty acid hexadecatetraenoic acid [16:4(n-3)]

description: Previous studies have shown that dinoflagellates with different plastid ancestries have distinct differences in the fatty acid compositions and regiochemistries of their chloroplast-associated galactolipids, mono- and digalactosyldiacylglycerol (MGDG and DGDG, respectively), thus reflecting plastid origin as a major factor in plastid membrane composition. Specifically, dinoflagellates with aberrant plastids (e.g. <i>Karenia brevis, Kryptoperidinium foliaceum</i> and <i>Lepidodinium chlorophorum</i>) possess certain MGDG- and DGDG-associated fatty acids which are not found in peridinin-containing dinoflagellates (the largest group of photosynthetic dinoflagellates with a red algal plastid ancestry which is thought to be an evolutionary precursor to aberrant plastids), but which are common to other algal groups. For example, hexadecatetraenoic acid (16:4(n-3)) is common to green algae and is found in the MGDG and DGDG of <i>L. chlorophorum</i>, which agrees with its green algal plastid ancestry, while hexadecatrienoic acid (16:3) and hexadecadienoic acid (16:2) are found in the MGDG and DGDG of <i>K. foliaceum</i>, which agrees with its diatom plastid ancestry. Notably, 16:4 has been found by others in the total fatty acids and galactolipids of <i>Karenia mikimotoi</i>, but in no other examined members of the Kareniaceae (all of which have plastids of haptophyte origin). However, these findings lack information as to the regiochemistry of 16:4. We have utilized positive-ion electrospray ionization/mass spectrometry (ESI/MS) and ESI/MS/MS to demonstrate that 16:4, which aside from <i>L. chlorophorum</i> is not found conclusively in the MGDG and DGDG of any other dinoflagellates examined to date irrespective of plastid ancestry, is found in <i>K. mikimotoi</i> as 18:5/16:4 (<i>sn</i>-1/<i>sn</i>-2 regiochemistry) MGDG and DGDG, and that its presence is not modulated (i.e. does not become more saturated) with an increase in growth temperature. Considering an aberrant pigment composition as described by others, we present a perspective where galactolipid-associated 16:4 in <i>K. mikimotoi</i> indicates a plastid ancestry more convoluted than for other members of the Kareniaceae.
DOI: 10.6084/m9.figshare.7460696
title: Experimental data.xlsx

description: This dataset was used to support the findings presented in a paper.
DOI: 10.6084/m9.figshare.7460705
title: Raw data and code

description: 1. Three GEO datasets2. merge three datasets3. remove batch effects4. DEGs identified by Rankprod5. GO and KEGG enrichment analysis<br>6. WGCNA<br><br>
DOI: 10.7284/133744
title: Speedlog data collected during research cruise MGL1905 using a Furuno DS-80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7460660
title: Birth weights and serum concentrations of anti-Müllerian hormone during menacme (as a proxy for functional ovarian reserve) of females aged 34-35 who were born at full term

description: This dataset investigates the possible relationship between birth weight and functional ovarian reserve, where the latter is estimated from serum level of anti-Müllerian hormone.The data is contained in a single <b>.xlsx </b>spreadsheet. The data were collected from 274 women who were born at full-term in Ribeirão Preto City between June 1, 1978 and May 31, 1979. Two measurement values are given:- Column A: relative size for gestational age at birth. This is presented as one of three categories: --- SGA (small for gestational age): birth weight below the 10th percentile--- AGA (appropriate for gestational age): birth weight between the 10th percentile and the 90th percentile--- LGA (large for gestational age): birth weight above the 90th percentile- Column B: AMH (anti-Müllerian hormone) concentration. This was determined using an immunoassay with the Ultra-sensitive AMH/MIS ELISA AL-105 apparatus (AnshLabs, Texas, USA®). The units are ng/mL.The related manuscript investigates the hypothesis that an adverse intrauterine environment can lead to low infant birth weight, and this can reprogram genes that regulate functional ovarian reserve. Under this hypothesis, a lower functional ovarian reserve is predicted in women who were born small for gestational age than in those who were born large for gestational age, where functional ovarian reserve is estimated by the serum level of anti-Müllerian hormone. To test the hypothesis, the authors investigated the relationship between the birth weight of full-term females and their functional ovarian reserve during menacme, which was estimated by serum anti-Müllerian hormone concentration. The women selected for the study were all 34-35 years-old.
DOI: 10.6084/m9.figshare.7460705.v1
title: Raw data and code

description: 1. Three GEO datasets2. WGCNA3. TCGA4. Validation
DOI: 10.7284/133746
title: SSV (Sound Speed Velocimeter) data collected during research cruise MGL1905 using a AML MicroSV instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7460660.v1
title: Birth weights and serum concentrations of anti-Müllerian hormone during menacme (as a proxy for functional ovarian reserve) of females aged 34-35 who were born at full term

description: This dataset investigates the possible relationship between birth weight and functional ovarian reserve, where the latter is estimated from serum level of anti-Müllerian hormone.The data is contained in a single <b>.xlsx </b>spreadsheet. The data were collected from 274 women who were born at full-term in Ribeirão Preto City between June 1, 1978 and May 31, 1979. Two measurement values are given:- Column A: relative size for gestational age at birth. This is presented as one of three categories: --- SGA (small for gestational age): birth weight below the 10th percentile--- AGA (appropriate for gestational age): birth weight between the 10th percentile and the 90th percentile--- LGA (large for gestational age): birth weight above the 90th percentile- Column B: AMH (anti-Müllerian hormone) concentration. This was determined using an immunoassay with the Ultra-sensitive AMH/MIS ELISA AL-105 apparatus (AnshLabs, Texas, USA®). The units are ng/mL.The related manuscript investigates the hypothesis that an adverse intrauterine environment can lead to low infant birth weight, and this can reprogram genes that regulate functional ovarian reserve. Under this hypothesis, a lower functional ovarian reserve is predicted in women who were born small for gestational age than in those who were born large for gestational age, where functional ovarian reserve is estimated by the serum level of anti-Müllerian hormone. To test the hypothesis, the authors investigated the relationship between the birth weight of full-term females and their functional ovarian reserve during menacme, which was estimated by serum anti-Müllerian hormone concentration. The women selected for the study were all 34-35 years-old.
DOI: 10.6084/m9.figshare.7460696.v1
title: Experimental data.xlsx

description: This dataset was used to support the findings presented in a paper.
DOI: 10.6084/m9.figshare.7460705.v2
title: Raw data and code

description: 1. Three GEO datasets2. WGCNA3. TCGA4. Validation5. If you cannot used the probe2symbol.pl in the Three GEO datasets.rar and Validation.rar, please used the new probe2symbol.pl i have uploaded.
DOI: 10.6084/m9.figshare.7460645
title: Understanding the economic impact of leishmaniasis on households in endemic countries: a systematic review

description: <b>Introduction</b>: Leishmaniasis is a poverty-related disease that causes a significant socioeconomic burden to affected households. Visceral leishmaniasis is fatal if untreated, yet illness costs may lead to delays in accessing care. Skin manifestations of leishmaniasis cause a psychological burden and even longer treatment trajectories. The objective of this review is to evaluate illness costs associated with leishmaniasis across different settings (Asia, Africa, and Latin America) and the consequences to households. <b>Areas covered</b>: Through a systematic review of cost-of-illness studies, we documented the distribution of costs, the health-seeking behavior, and the consequences of leishmaniasis. We discuss the value of cost-of-illness studies for leishmaniasis. <b>Expert commentary</b>: Despite the free provision of diagnostics and treatment in the public health care sector, out-of-pocket payments remain substantial. There has been progress in addressing the economic burden of leishmaniasis, particularly through the elimination initiative in the Indian subcontinent. Though the illness cost is decreasing due to shorter treatment regimens and better access to care, the situation remains challenging in Africa. Improvement of control tools is critical. There is a need to update cost estimates to inform policy-making and ensure sustainable solutions to reduce financial barriers to leishmaniasis care, especially in pursuing universal health coverage.
DOI: 10.6084/m9.figshare.7460648
title: PySM templates

description: Templates for PySM components
DOI: 10.7284/133745
title: TSG (Thermosalinograph) data collected during research cruise MGL1905 using a Sea-Bird SBE-45 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7460645.v1
title: Understanding the economic impact of leishmaniasis on households in endemic countries: a systematic review

description: <b>Introduction</b>: Leishmaniasis is a poverty-related disease that causes a significant socioeconomic burden to affected households. Visceral leishmaniasis is fatal if untreated, yet illness costs may lead to delays in accessing care. Skin manifestations of leishmaniasis cause a psychological burden and even longer treatment trajectories. The objective of this review is to evaluate illness costs associated with leishmaniasis across different settings (Asia, Africa, and Latin America) and the consequences to households. <b>Areas covered</b>: Through a systematic review of cost-of-illness studies, we documented the distribution of costs, the health-seeking behavior, and the consequences of leishmaniasis. We discuss the value of cost-of-illness studies for leishmaniasis. <b>Expert commentary</b>: Despite the free provision of diagnostics and treatment in the public health care sector, out-of-pocket payments remain substantial. There has been progress in addressing the economic burden of leishmaniasis, particularly through the elimination initiative in the Indian subcontinent. Though the illness cost is decreasing due to shorter treatment regimens and better access to care, the situation remains challenging in Africa. Improvement of control tools is critical. There is a need to update cost estimates to inform policy-making and ensure sustainable solutions to reduce financial barriers to leishmaniasis care, especially in pursuing universal health coverage.
DOI: 10.7284/133758
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGL1907 using a Hawaii UHDAS instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133752
title: Expendable Probe data collected during research cruise MGL1907 using a Sippican MK21 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7460624
title: Table 1

description: Characteristics of the study population (N=1068)
DOI: 10.6084/m9.figshare.7460612
title: Additional file 1: of VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database

description: An example sample sheet containing samples information that is used to start an analysis in VarGenius. (TSV 330 bytes)
DOI: 10.6084/m9.figshare.7460615
title: Additional file 2: of VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database

description: An example of the tabular output generated by VarGenius. (TSV 34789 kb)
DOI: 10.6084/m9.figshare.7460624.v1
title: Table 1

description: Characteristics of the study population (N=1068)
DOI: 10.7284/133755
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1907 using a C&C C-Nav 2000 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7460612.v1
title: Additional file 1: of VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database

description: An example sample sheet containing samples information that is used to start an analysis in VarGenius. (TSV 330 bytes)
DOI: 10.6084/m9.figshare.7460609
title: Additional file 2: of Resistance profile of clinically relevant bacterial isolates against fluoroquinolone in Ethiopia: a systematic review and meta-analysis

description: Table S2. Data abstraction format. The table presented the ways of data collection (study characteristics and outcome measures) in Microsoft excel format. It also contained a raw data for outcome analyses. (XLSX 27â kb)
DOI: 10.7284/133759
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1907 using a C&C C-Nav 3050 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7460609.v1
title: Additional file 2: of Resistance profile of clinically relevant bacterial isolates against fluoroquinolone in Ethiopia: a systematic review and meta-analysis

description: Table S2. Data abstraction format. The table presented the ways of data collection (study characteristics and outcome measures) in Microsoft excel format. It also contained a raw data for outcome analyses. (XLSX 27â kb)
DOI: 10.7284/133756
title: Gravimeter data collected during research cruise MGL1907 using a Bell BGM-3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133754
title: Gyrocompass data collected during research cruise MGL1907 using a Kongsberg Simrad GC80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7460588
title: Additional file 1: of Long-term colonization exceeding six years from early infancy of Bifidobacterium longum subsp. longum in human gut

description: Table S1. Detailed information of the subjects participating in the follow-up study. Table S2. Count of B. longum subsp. longum isolates obtained from the samples collected from the 12 subjects and their mothers. Table S3. Detailed information of the representative strains and the type strains of B. longum subsp. infantis and B. longum subsp. longum. Table S4. Allelic profiles for the representative strains and the type strains of B. longum subsp. infantis and B. longum subsp. longum Table S5. Raw data of qPCR analysis (XLSX 128 kb)
DOI: 10.7284/133757
title: INS (Inertial Navigation System) data collected during research cruise MGL1907 using a Applanix POS/MV-320 V3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7460588.v1
title: Additional file 1: of Long-term colonization exceeding six years from early infancy of Bifidobacterium longum subsp. longum in human gut

description: Table S1. Detailed information of the subjects participating in the follow-up study. Table S2. Count of B. longum subsp. longum isolates obtained from the samples collected from the 12 subjects and their mothers. Table S3. Detailed information of the representative strains and the type strains of B. longum subsp. infantis and B. longum subsp. longum. Table S4. Allelic profiles for the representative strains and the type strains of B. longum subsp. infantis and B. longum subsp. longum Table S5. Raw data of qPCR analysis (XLSX 128 kb)
DOI: 10.7284/133764
title: INS (Inertial Navigation System) data collected during research cruise MGL1907 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133763
title: Meteorological Station data collected during research cruise MGL1907 using a Vaisala WXT520 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133765
title: Multibeam Echosounder data collected during research cruise MGL1907 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133766
title: Multibeam Echosounder data collected during research cruise MGL1907 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7460546
title: Additional file 3: of On the use of approximate entropy and sample entropy with centre of pressure time-series

description: Dataset. This file contains the approximate entropy and sample entropy values computed from the original COP time-series for the seventy-two combinations of parameter values reported in the manuscript. (CSV 9295 kb)
DOI: 10.6084/m9.figshare.7460549
title: MOESM1 of Choroid plexus genes for CSF production and brain homeostasis are altered in Alzheimerâ s disease

description: Additional file 1. Gene expression values.
DOI: 10.6084/m9.figshare.7460549.v1
title: MOESM1 of Choroid plexus genes for CSF production and brain homeostasis are altered in Alzheimerâ s disease

description: Additional file 1. Gene expression values.
DOI: 10.6084/m9.figshare.7460546.v1
title: Additional file 3: of On the use of approximate entropy and sample entropy with centre of pressure time-series

description: Dataset. This file contains the approximate entropy and sample entropy values computed from the original COP time-series for the seventy-two combinations of parameter values reported in the manuscript. (CSV 9295 kb)
DOI: 10.7284/133753
title: Singlebeam Echosounder data collected during research cruise MGL1907 using a Knudsen 3260 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133760
title: Speedlog data collected during research cruise MGL1907 using a Furuno DS-80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133762
title: SSV (Sound Speed Velocimeter) data collected during research cruise MGL1907 using a AML MicroSV instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133761
title: TSG (Thermosalinograph) data collected during research cruise MGL1907 using a Sea-Bird SBE-45 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105008
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGLN01MV using a RDI OS-75 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105005
title: Expendable Probe data collected during research cruise MGLN01MV using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/101774
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN01MV using a Furuno GP-90D instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/101775
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGLN01MV using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7460483
title: MOESM1 of Reconstructing ancient architecture at Tiwanaku, Bolivia: the potential and promise of 3D printing

description: Additional file 1. 3D models of (1) Andesite blocks from the Pumapunku, (2) Sandstone slabs from the Pumapunku, (3) Andesite blocks from locations other than within the boundaries of the Pumapunku monument, and (4) Gateways at the Pumapunku and other areas of the ruins in .skp and .stl format.