cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9790667
title: Additional file 2: of Proper evaluation of chemical cross-linking-based spatial restraints improves the precision of modeling homo-oligomeric protein complexes

description: Table S2. Results of Scoring function comparisons. Results are presented as the precision of each scoring function for homo-oligomeric protein complex in the analyzed dataset. Precision of both PathDock an Symmdock withouth cross-linking-based distance restrains is also presented. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9790667.v1
title: Additional file 2: of Proper evaluation of chemical cross-linking-based spatial restraints improves the precision of modeling homo-oligomeric protein complexes

description: Table S2. Results of Scoring function comparisons. Results are presented as the precision of each scoring function for homo-oligomeric protein complex in the analyzed dataset. Precision of both PathDock an Symmdock withouth cross-linking-based distance restrains is also presented. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9790700.v2
title: Supporting information files: Protracted multipulse emplacement of a post-resurgent pluton: the case of Platoro caldera complex (Southern Rocky Mountain volcanic field, Colorado)

description: This file contains data tables of the sensitive high resolution ion microprobe with reversed geometry (SHRIMP-RG) U-Pb zircon dating, and anisotropy of magnetic susceptibility (AMS) analyses.
DOI: 10.6084/m9.figshare.9790700.v4
title: Supporting information files: Protracted multipulse emplacement of a post-resurgent pluton: the case of Platoro caldera complex (Southern Rocky Mountain volcanic field, Colorado)

description: This file contains data tables of the sensitive high resolution ion microprobe with reversed geometry (SHRIMP-RG) U-Pb zircon dating, and anisotropy of magnetic susceptibility (AMS) analyses.
DOI: 10.6084/m9.figshare.9790700.v3
title: Supporting information files: Protracted multipulse emplacement of a post-resurgent pluton: the case of Platoro caldera complex (Southern Rocky Mountain volcanic field, Colorado)

description: This file contains data tables of the sensitive high resolution ion microprobe with reversed geometry (SHRIMP-RG) U-Pb zircon dating, and anisotropy of magnetic susceptibility (AMS) analyses.
DOI: 10.6084/m9.figshare.9790649
title: Additional file 2 of Predicting links between tumor samples and genes using 2-Layered graph based diffusion approach

description: The resutls of the top 100 predicted tumor samples and genes association for breast carcinoma. (XLSX 7 kb)
DOI: 10.6084/m9.figshare.9790640
title: Additional file 1 of Predicting links between tumor samples and genes using 2-Layered graph based diffusion approach

description: The results of the top 100 predicted tumor samples and genes association with diffusion scores. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9790649.v1
title: Additional file 2 of Predicting links between tumor samples and genes using 2-Layered graph based diffusion approach

description: The resutls of the top 100 predicted tumor samples and genes association for breast carcinoma. (XLSX 7 kb)
DOI: 10.6084/m9.figshare.9790637
title: Additional file 1: of Adherence to guidelines and suboptimal practice in term breech delivery with perinatal death- a population-based case-control study in Norway

description: Items recommended in the national Norwegian guidelines for breech presentation (2014). (ZIP 12 kb)
DOI: 10.6084/m9.figshare.9790640.v1
title: Additional file 1 of Predicting links between tumor samples and genes using 2-Layered graph based diffusion approach

description: The results of the top 100 predicted tumor samples and genes association with diffusion scores. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9790637.v1
title: Additional file 1: of Adherence to guidelines and suboptimal practice in term breech delivery with perinatal death- a population-based case-control study in Norway

description: Items recommended in the national Norwegian guidelines for breech presentation (2014). (ZIP 12 kb)
DOI: 10.6084/m9.figshare.9790484
title: Additional file 2: of The impact of post-fall huddles on repeat fall rates and perceptions of safety culture: a quasi-experimental evaluation of a patient safety demonstration project

description: This dataset contains two worksheets. One worksheet contains responses from hospital staff who completed the Hospital Survey on Patient Safety Culture (HSOPS) and the TeamSTEPPSÂŽ Teamwork Perceptions Questionnaire (T-TPQ). The second worksheet is a data dictionary. (XLSX 765 kb)
DOI: 10.6084/m9.figshare.9790484.v1
title: Additional file 2: of The impact of post-fall huddles on repeat fall rates and perceptions of safety culture: a quasi-experimental evaluation of a patient safety demonstration project

description: This dataset contains two worksheets. One worksheet contains responses from hospital staff who completed the Hospital Survey on Patient Safety Culture (HSOPS) and the TeamSTEPPSÂŽ Teamwork Perceptions Questionnaire (T-TPQ). The second worksheet is a data dictionary. (XLSX 765 kb)
DOI: 10.6084/m9.figshare.9790478
title: Additional file 1: of The impact of post-fall huddles on repeat fall rates and perceptions of safety culture: a quasi-experimental evaluation of a patient safety demonstration project

description: This dataset contains 11 variables that provide information about the characteristics of the 16 hospitals participating in this study, the number of fall events each hospital reported during the study, the number of unique patients who fell, and the number of falls followed by a post-fall huddle. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9790478.v1
title: Additional file 1: of The impact of post-fall huddles on repeat fall rates and perceptions of safety culture: a quasi-experimental evaluation of a patient safety demonstration project

description: This dataset contains 11 variables that provide information about the characteristics of the 16 hospitals participating in this study, the number of fall events each hospital reported during the study, the number of unique patients who fell, and the number of falls followed by a post-fall huddle. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9790325
title: Additional file 3: of HPAanalyze: an R package that facilitates the retrieval and analysis of the Human Protein Atlas data

description: SPR. Supplemental material for Fig. 4. Primary data in GlioVis used to generate the survival curves demonstrating that elevated SPR mRNA expression correlates with poor glioma patient survival. (CSV 26 kb)
DOI: 10.6084/m9.figshare.9790331
title: Additional file 4: of HPAanalyze: an R package that facilitates the retrieval and analysis of the Human Protein Atlas data

description: DHFR. Supplemental material for Fig. 4. Primary data in GlioVis used to generate the survival curves demonstrating that elevated DHFR mRNA expression correlates with poor glioma patient survival. (CSV 26 kb)
DOI: 10.6084/m9.figshare.9790331.v1
title: Additional file 4: of HPAanalyze: an R package that facilitates the retrieval and analysis of the Human Protein Atlas data

description: DHFR. Supplemental material for Fig. 4. Primary data in GlioVis used to generate the survival curves demonstrating that elevated DHFR mRNA expression correlates with poor glioma patient survival. (CSV 26 kb)
DOI: 10.6084/m9.figshare.9790316
title: Additional file 2: of HPAanalyze: an R package that facilitates the retrieval and analysis of the Human Protein Atlas data

description: R Codes for Figs. 2, 3, 4 and 5 rmd. Supplemental material for Figs. 2, 3, 4 and 5 rmd format. Input parameters for HPAanalyze to generate Figs. 2, 3, 4 and 5 are provided. (RMD 8 kb)
DOI: 10.6084/m9.figshare.9790325.v1
title: Additional file 3: of HPAanalyze: an R package that facilitates the retrieval and analysis of the Human Protein Atlas data

description: SPR. Supplemental material for Fig. 4. Primary data in GlioVis used to generate the survival curves demonstrating that elevated SPR mRNA expression correlates with poor glioma patient survival. (CSV 26 kb)
DOI: 10.6084/m9.figshare.9790310
title: Additional file 1: of HPAanalyze: an R package that facilitates the retrieval and analysis of the Human Protein Atlas data

description: R Codes for Figs. 2, 3, 4 and 5 html. Supplemental material for Figs. 2, 3, 4 and 5 html format. Input parameters for HPAanalyze to generate Figs. 2, 3, 4 and 5 are shown. (HTML 626 kb)
DOI: 10.6084/m9.figshare.9790310.v1
title: Additional file 1: of HPAanalyze: an R package that facilitates the retrieval and analysis of the Human Protein Atlas data

description: R Codes for Figs. 2, 3, 4 and 5 html. Supplemental material for Figs. 2, 3, 4 and 5 html format. Input parameters for HPAanalyze to generate Figs. 2, 3, 4 and 5 are shown. (HTML 626 kb)
DOI: 10.6084/m9.figshare.9790316.v1
title: Additional file 2: of HPAanalyze: an R package that facilitates the retrieval and analysis of the Human Protein Atlas data

description: R Codes for Figs. 2, 3, 4 and 5 rmd. Supplemental material for Figs. 2, 3, 4 and 5 rmd format. Input parameters for HPAanalyze to generate Figs. 2, 3, 4 and 5 are provided. (RMD 8 kb)
DOI: 10.6084/m9.figshare.9790262
title: Additional file 4: of â Candidatus Phytoplasma solaniâ interferes with the distribution and uptake of iron in tomato

description: Table S8. Top 100 up- or downregulated regulated genes in all pairwise comparisons. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.9790262.v1
title: Additional file 4: of â Candidatus Phytoplasma solaniâ interferes with the distribution and uptake of iron in tomato

description: Table S8. Top 100 up- or downregulated regulated genes in all pairwise comparisons. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.9790226
title: Additional file 1: of Hospital outbreak caused by linezolid resistant Enterococcus faecium in Upper Austria

description: Table S1. Resistance genes and point mutations at the 23S rRNA found among the sequenced strains. Table S2. Virulence genes carried by the 54 sequenced strains and resistance phenotype. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.9790226.v1
title: Additional file 1: of Hospital outbreak caused by linezolid resistant Enterococcus faecium in Upper Austria

description: Table S1. Resistance genes and point mutations at the 23S rRNA found among the sequenced strains. Table S2. Virulence genes carried by the 54 sequenced strains and resistance phenotype. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.9790199
title: MOESM4 of Assessment of pesticides in surface water samples from Swedish agricultural areas by integrated bioanalysis and chemical analysis

description: Additional file 4: Table S4. Bioactivity and cell viability (fold change; mean ± standard deviation, n = 4) and pesticide concentrations (µg/L) in 157 water samples.
DOI: 10.6084/m9.figshare.9790199.v1
title: MOESM4 of Assessment of pesticides in surface water samples from Swedish agricultural areas by integrated bioanalysis and chemical analysis

description: Additional file 4: Table S4. Bioactivity and cell viability (fold change; mean ± standard deviation, n = 4) and pesticide concentrations (µg/L) in 157 water samples.
DOI: 10.6084/m9.figshare.9790193
title: MOESM3 of Assessment of pesticides in surface water samples from Swedish agricultural areas by integrated bioanalysis and chemical analysis

description: Additional file 3: Table S3. Recovery for pesticides normally analyzed with an LC–MS/MS method, when extracted according to the GC–MS method based on dichloromethane extraction and subsequently used for toxicity bioassays.
DOI: 10.6084/m9.figshare.9790193.v1
title: MOESM3 of Assessment of pesticides in surface water samples from Swedish agricultural areas by integrated bioanalysis and chemical analysis

description: Additional file 3: Table S3. Recovery for pesticides normally analyzed with an LC–MS/MS method, when extracted according to the GC–MS method based on dichloromethane extraction and subsequently used for toxicity bioassays.
DOI: 10.6084/m9.figshare.9790175
title: MOESM1 of Assessment of pesticides in surface water samples from Swedish agricultural areas by integrated bioanalysis and chemical analysis

description: Additional file 1: Table S1. Analyzed pesticides, CAS numbers and method of analysis.
DOI: 10.6084/m9.figshare.9790163
title: Additional file 1: of Three year survival among patients with aids-related Kaposi sarcoma treated with chemotherapy and combination antiretroviral therapy at Moi teaching and referral hospital, Kenya

description: Patient data (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9790175.v1
title: MOESM1 of Assessment of pesticides in surface water samples from Swedish agricultural areas by integrated bioanalysis and chemical analysis

description: Additional file 1: Table S1. Analyzed pesticides, CAS numbers and method of analysis.
DOI: 10.6084/m9.figshare.9790163.v1
title: Additional file 1: of Three year survival among patients with aids-related Kaposi sarcoma treated with chemotherapy and combination antiretroviral therapy at Moi teaching and referral hospital, Kenya

description: Patient data (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9790142
title: Additional file 9: of Transcriptome changes reveal the genetic mechanisms of the reproductive plasticity of workers in lower termites

description: In profile5, 31 pathways were significantly related to IWs differentiation into NRs (Q-value
DOI: 10.6084/m9.figshare.9790142.v1
title: Additional file 9: of Transcriptome changes reveal the genetic mechanisms of the reproductive plasticity of workers in lower termites

description: In profile5, 31 pathways were significantly related to IWs differentiation into NRs (Q-value
DOI: 10.6084/m9.figshare.9790130
title: Additional file 9 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Cytoscape session file visualising the RNA-seq expression data of endothelial cells (CYS 58.6 kb).
DOI: 10.6084/m9.figshare.9790124
title: Additional file 8 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Archive containing alternative verification models from the review article constructed in GINsim (ZIP 11.3 kb).
DOI: 10.6084/m9.figshare.9790130.v1
title: Additional file 9 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Cytoscape session file visualising the RNA-seq expression data of endothelial cells (CYS 58.6 kb).
DOI: 10.6084/m9.figshare.9790115
title: Additional file 7 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Cytoscape session file of the HTGs of Models 1, 2, 3 and 4 (CYS 82.4 kb).
DOI: 10.6084/m9.figshare.9790112
title: Additional file 6 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Cytoscape session file of the STGs of Models 1, 2, 3 and 4 (CYS 967 kb).
DOI: 10.6084/m9.figshare.9790124.v1
title: Additional file 8 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Archive containing alternative verification models from the review article constructed in GINsim (ZIP 11.3 kb).
DOI: 10.6084/m9.figshare.9790112.v1
title: Additional file 6 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Cytoscape session file of the STGs of Models 1, 2, 3 and 4 (CYS 967 kb).
DOI: 10.6084/m9.figshare.9790115.v1
title: Additional file 7 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Cytoscape session file of the HTGs of Models 1, 2, 3 and 4 (CYS 82.4 kb).
DOI: 10.6084/m9.figshare.9790103
title: Additional file 5 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Archive containing the SMBioNet and GINsim source file for the regulatory network of cellular metabolic flexibility (ZIP 10.1 kb).
DOI: 10.6084/m9.figshare.9790094
title: Additional file 2: of Predictive factors for response to salvage stereotactic body radiotherapy in oligorecurrent prostate cancer limited to lymph nodes: a single institution experience

description: Figure S1. Time to ADT after SBRT according to initial T stage (pT2 vs. pT3). Figure S2. Time to ADT after SBRT according to initial presence/absence of ECE. (ZIP 106 kb)
DOI: 10.6084/m9.figshare.9790103.v1
title: Additional file 5 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Archive containing the SMBioNet and GINsim source file for the regulatory network of cellular metabolic flexibility (ZIP 10.1 kb).
DOI: 10.6084/m9.figshare.9790094.v1
title: Additional file 2: of Predictive factors for response to salvage stereotactic body radiotherapy in oligorecurrent prostate cancer limited to lymph nodes: a single institution experience

description: Figure S1. Time to ADT after SBRT according to initial T stage (pT2 vs. pT3). Figure S2. Time to ADT after SBRT according to initial presence/absence of ECE. (ZIP 106 kb)
DOI: 10.6084/m9.figshare.9790073
title: Additional file 1 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Archive containing the SMBioNet and GINsim source files for toy example (ZIP 1.66 kb).
DOI: 10.6084/m9.figshare.9790073.v1
title: Additional file 1 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

description: Archive containing the SMBioNet and GINsim source files for toy example (ZIP 1.66 kb).
DOI: 10.6084/m9.figshare.9790046
title: Additional file 1: of Enhancer variants associated with Alzheimerâ s disease affect gene expression via chromatin looping

description: Tables S1 List of 392 non-coding AD SNPs. Table S2 List of 127 tissues or cell types. Table S3 List of 25 chromatin states from ChromHMM. Table S4 Gene functional enrichment analysis using DAVID database. Table S5 Gene functional enrichment analysis using the MSigDB database. Table S6 Differentially expressed genes (DEGs) between AD and non-AD in each brain tissue in each dataset. Table S7 List of neuronal tissues or cell types in which 19 SNPs are located in TF-binding sites from ENOCDE ChIP-seq data. Table S8 List of tissues or cell types in which AD candidate gene loci showed enhancer activity. Table S9 List of tissues or cell types in which rs1476679 or rs7364180 loci showed enhancer activity. Table S10 List of tissues or cell types in which rs1476679 or rs7364180 loci are located in CTCF-binding sites from ChIP-seq data in UCSC genome browser. Table S11 ChIP-seq experiments recorded in ChIP-Atlas. Table S12 Diseases associated with SREBF2. Table S13 SREBF2 targets from TRRUST. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.9790046.v1
title: Additional file 1: of Enhancer variants associated with Alzheimerâ s disease affect gene expression via chromatin looping

description: Tables S1 List of 392 non-coding AD SNPs. Table S2 List of 127 tissues or cell types. Table S3 List of 25 chromatin states from ChromHMM. Table S4 Gene functional enrichment analysis using DAVID database. Table S5 Gene functional enrichment analysis using the MSigDB database. Table S6 Differentially expressed genes (DEGs) between AD and non-AD in each brain tissue in each dataset. Table S7 List of neuronal tissues or cell types in which 19 SNPs are located in TF-binding sites from ENOCDE ChIP-seq data. Table S8 List of tissues or cell types in which AD candidate gene loci showed enhancer activity. Table S9 List of tissues or cell types in which rs1476679 or rs7364180 loci showed enhancer activity. Table S10 List of tissues or cell types in which rs1476679 or rs7364180 loci are located in CTCF-binding sites from ChIP-seq data in UCSC genome browser. Table S11 ChIP-seq experiments recorded in ChIP-Atlas. Table S12 Diseases associated with SREBF2. Table S13 SREBF2 targets from TRRUST. (XLSX 71 kb)
DOI: 10.25392/leicester.data.9789545
title: Ageing and Word Predictability in Chinese Reading: One-Character Words

description: These are the datafile and R analysis script used to analyse one-word target words in sentences in Chinese where the target words are either highly predictable or less predictable from the prior sentences. There were 40 young adult (aged 18-30 years) and 40 older adult (aged 65+ years) participants and 63 stimulus sets.
DOI: 10.25392/leicester.data.9789545.v1
title: Ageing and Word Predictability in Chinese Reading: One-Character Words

description: These are the datafile and R analysis script used to analyse one-word target words in sentences in Chinese where the target words are either highly predictable or less predictable from the prior sentences. There were 40 young adult (aged 18-30 years) and 40 older adult (aged 65+ years) participants and 63 stimulus sets.
DOI: 10.6084/m9.figshare.9789470
title: suppl_data

description: experiment1 and experiment2 data and statistics
DOI: 10.17608/k6.auckland.9789467
title: Supplementary Table 9 List of Druggable eGenes from GS, MG, MS and ALS from immortalized cell line and psoas muscle Hi-C dataset

description: A subset of eGenes associated with GS, MG, MS and ALS are identified to have druggable property. The dataset contains a list of those druggable eGenes.
DOI: 10.6084/m9.figshare.9789470.v1
title: suppl_data

description: experiment1 and experiment2 data and statistics
DOI: 10.6084/m9.figshare.9789455
title: <i>Cryodrakon boreas</i>, gen. et sp. nov., a Late Cretaceous Canadian azhdarchid pterosaur

description: Azhdarchid pterosaurs have been known since 1972 from upper Campanian deposits of Alberta, Canada. Originally represented by only very fragmentary remains tentatively assigned to the genus <i>Quetzalcoatlus</i>, additional material uncovered over the years has revealed that the taxonomic identity of the Alberta pterosaur material is at odds with this in the light of the growing understanding of azhdarchid diversity. Here, we describe previously undocumented pterosaur remains from Alberta and reassess previously studied material. The specimens collected from the Dinosaur Park Formation can be assigned to a new genus and species <i>Cryodrakon boreas</i>, gen. et sp. nov. The largest elements referable to this taxon suggest that this genus reached sizes comparable to those of other giant azhdarchids.
DOI: 10.17608/k6.auckland.9789458
title: Supplementary Table 8. Overlapping pathways identified between MG, MS and ALS from immortalized cell line Hi-C dataset and psoas muscle Hi-C dataset

description: A number of biological pathways were identified to be shared between MG, MS and ALS in common. The dataset contains all the details about the overlapping biological pathways, eGenes involved in those pathways and KEGG category under which the pathways are classified.
DOI: 10.17608/k6.auckland.9789458.v1
title: Supplementary Table 8. Overlapping pathways identified between MG, MS and ALS from immortalized cell line Hi-C dataset and psoas muscle Hi-C dataset

description: A number of biological pathways were identified to be shared between MG, MS and ALS in common. The dataset contains all the details about the overlapping biological pathways, eGenes involved in those pathways and KEGG category under which the pathways are classified.
DOI: 10.17608/k6.auckland.9789467.v1
title: Supplementary Table 9 List of Druggable eGenes from GS, MG, MS and ALS from immortalized cell line and psoas muscle Hi-C dataset

description: A subset of eGenes associated with GS, MG, MS and ALS are identified to have druggable property. The dataset contains a list of those druggable eGenes.