cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ac4dja
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trimeresurus tibetanus)",
 "Country is one of (China, India, Indonesia, Pakistan, Bangladesh, Japan, Philippines, Viet Nam, Türkiye, Iran (Islamic Republic of), Thailand, Myanmar, Korea, Republic of, Korea (Democratic People’s Republic of), Iraq, Afghanistan, Saudi Arabia, Uzbekistan, Malaysia, Yemen, Nepal, Sri Lanka, Kazakhstan, Syrian Arab Republic, Cambodia, Jordan, Azerbaijan, United Arab Emirates, Tajikistan, Israel, Lao People’s Democratic Republic, Lebanon, Kyrgyzstan, Turkmenistan, Singapore, Oman, Palestine, State of, Kuwait, Georgia, Mongolia, Armenia, Qatar, Bahrain, Timor-Leste, Cyprus, Bhutan, Maldives, Brunei Darussalam)",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2025",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007470-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4b8kd
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Antarctica",
 "OccurrenceStatus is Present",
 "TaxonKey is Juncus bufonius"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007471-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36js9n
title: Occurrence Download

description: A dataset containing 4767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Living Specimen)",
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Testudines"
 ]
}

 The dataset includes 4767 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007473-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15496827
title: Lymphoma Fingerprints in Healthy Individuals Uncovered through Single-Cell DNA Methylation Analyses

description: This dataset accompanies the manuscript: "Lymphoma Fingerprints in Healthy Individuals Uncovered through Single-Cell DNA Methylation Analyses."

It includes raw and processed data from single-cell multiomic profiling of human B cells, integrating single-cell DNA methylation (scDNAm) and surface-marker expression.

Contents

Raw Data:



scDNAm matrices (per sample): raw methylation counts from the scTAM-seq pipeline.

Surface-marker data: raw antibody-derived tag (ADT) counts per cell.

EM-seq: count matrix per sample. 

scRNA-seq: Celescope outs folder per sample/run.


Processed Data:



Final multiomic Seurat object (RDS format), containing three assays:



DNAm.counts: raw DNA methylation values

DNAm: binarized DNA methylation data

ADT: antibody-derived tag counts matrix



Seurat object with scRNA-seq data

EM-seq final counts matrix: % of methylated reads per CpG per sample.


Metadata

Integrated in the Seurat object and includes:



QC metrics

Cell-type annotations

B-cell receptor (BCR) annotation and related features.

Sample and donor metadata.


Samples



scTAM-seq: 12 samples derived from 9 healthy donors, from peripheral blood and bone marrow. Two samples (T23 and T49) are undigested controls (no HhaI enzyme) and can be used to assess false-negative rates.

scRNAseq: 4 samples of CD19+ B cells from blood. Two different populations (CD5high and CD5low) were sorted from each sample, T48 and T49. 

EM-seq: 6 samples in total from 3 donors. For each donor, we have an enriched (S1, S3, S5) and a control sample (S2, S4, S6). 


All donor and sample-specific information is available in the Seurat object metadata and detailed in the Supplementary Material of the published article.
DOI: 10.5281/zenodo.15496828
title: Lymphoma Fingerprints in Healthy Individuals Uncovered through Single-Cell DNA Methylation Analyses

description: This dataset accompanies the manuscript: "Lymphoma Fingerprints in Healthy Individuals Uncovered through Single-Cell DNA Methylation Analyses."

It includes raw and processed data from single-cell multiomic profiling of human B cells, integrating single-cell DNA methylation (scDNAm) and surface-marker expression.

Contents

Raw Data:



scDNAm matrices (per sample): raw methylation counts from the scTAM-seq pipeline.

Surface-marker data: raw antibody-derived tag (ADT) counts per cell.

EM-seq: count matrix per sample. 

scRNA-seq: Celescope outs folder per sample/run.


Processed Data:



Final multiomic Seurat object (RDS format), containing three assays:



DNAm.counts: raw DNA methylation values

DNAm: binarized DNA methylation data

ADT: antibody-derived tag counts matrix



Seurat object with scRNA-seq data

EM-seq final counts matrix: % of methylated reads per CpG per sample.


Metadata

Integrated in the Seurat object and includes:



QC metrics

Cell-type annotations

B-cell receptor (BCR) annotation and related features.

Sample and donor metadata.


Samples



scTAM-seq: 12 samples derived from 9 healthy donors, from peripheral blood and bone marrow. Two samples (T23 and T49) are undigested controls (no HhaI enzyme) and can be used to assess false-negative rates.

scRNAseq: 4 samples of CD19+ B cells from blood. Two different populations (CD5high and CD5low) were sorted from each sample, T48 and T49. 

EM-seq: 6 samples in total from 3 donors. For each donor, we have an enriched (S1, S3, S5) and a control sample (S2, S4, S6). 


All donor and sample-specific information is available in the Seurat object metadata and detailed in the Supplementary Material of the published article.
DOI: 10.60534/8s9sz-psy95
title: A novel biosensor for ferrous iron developed via CoBiSe: A computational method for rapid biosensor design

description: hosted on: https://git.nfdi4plants.org/projects/3371
DOI: 10.15468/dl.r96fmu
title: Occurrence Download

description: A dataset containing 414240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Agriades glandon, Agrodiaetus damon, Albulina orbitulus, Anthocharis euphenoides, Boloria napaea, Boloria pales, Boloria titania, Carcharodus lavatherae, Charaxes jasius, Coenonympha corinna, Colias phicomone, Elkalyce alcetas, Erebia alberganus, Erebia epiphron, Erebia melampus, Erebia meolans, Fabriciana niobe, Heteropterus morpheus, Hipparchia fagi, Lampides boeticus, Leptotes pirithous, Lysandra hispana, Melanargia occitanica, Melitaea phoebe, Parnassius apollo, Parnassius mnemosyne, Polyommatus eros, Pyrgus armoricanus, Pyrgus malvoides, Thymelicus acteon)",
 "Geometry POLYGON((-5.2 43.7, 4 41.9, 8.5 41.9, 8.5 41.2, 10 41.2, 10 43.4, 8.5 43.4, 8.5 49, 2.5 51.2, -5.2 49.5, -5.2 43.7))"
 ]
}

 The dataset includes 414240 records from 2612 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007458-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/0zt-al2-5kd
title: Agrostis stolonifera L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/2q8-l86-2el
title: Cystopteris fragilis (L.) Bernh.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/qx2-ny1-wyx
title: Plantae

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/kyk-4zg-mfm
title: Vicia sepium L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/lpj-d11-nql
title: Agrostis stolonifera L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/rxf-8wt-an1
title: Turritis glabra L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/n75-rle-68q
title: Schoenoplectus lacustris (L.) Palla

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/bln-85q-861
title: Dryopteris Adans.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/r2e-a39-gwm
title: Carex L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/dvs-x8f-lzs
title: Cystopteris fragilis (L.) Bernh.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/e2x-ahe-0x3
title: Potentilla thuringiaca Bernh. ex Link

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nls-afw-reb
title: Potamogeton obtusifolius Mert. & W.D.J.Koch

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/111-mh1-9ph
title: Agrostis stolonifera L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/27c-3rd-lhv
title: Plantae

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/wpk-re2-898
title: Carex pauciflora Lightf.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/6xb-vd0-73s
title: Carex panicea L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/q1h-qdk-hat
title: Geranium robertianum L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.ernvf5
title: Occurrence Download

description: A dataset containing 1030739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus sylvestris"
 ]
}

 The dataset includes 1030739 records from 2313 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009495-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v57wsk
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DEU.3_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Hypotrachyna revoluta (Flörke) Hale"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009747-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25326/r6rf-n573
title: (-)-carveol + None - Aerosol study - heterogeneous reactivity - 2009-01-21

description: Publication of the dataset
DOI: 10.15468/dl.tv8nft
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Paraguay",
 "TaxonKey is Chelonoidis carbonarius (Spix, 1824)",
 "Year 2014-2025"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009616-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmhyza
title: Occurrence Download

description: A dataset containing 611 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tillandsia bourgaei Baker"
 ]
}

 The dataset includes 611 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007233-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.jq878
title: Data from: Inbreeding avoidance, patch isolation and matrix permeability influence dispersal and settlement choices by male agile antechinus in a fragmented landscape

description: 1. Animal dispersal is highly non-random and has important implications
 for the dynamics of populations in fragmented habitat. We identified
 interpatch dispersal events from genetic tagging, parentage analyses and
 assignment tests and modelled the factors associated with apparent
 emigration and post-dispersal settlement choices by individual male agile
 antechinus (Antechinus agilis, a marsupial carnivore of south-east
 Australian forests). 2. Emigration decisions were best modelled with on
 data patch isolation and inbreeding risk. 3. The choice of dispersal
 destination by males was influenced by inbreeding risk, female abundance,
 patch size, patch quality and matrix permeability (variation in land
 cover). Males were less likely to settle in patches without highly
 unrelated females. 4. Our findings highlight the importance of
 individual-level dispersal data for understanding how multiple processes
 drive non-randomness in dispersal in modified landscapes. Fragmented
 landscapes present novel environmental, demographic and genetic contexts
 in which dispersal decisions are made, so the major factors affecting
 dispersal decisions in fragmented habitat may differ considerably from
 unfragmented landscapes. We show that the spatial scale of genetic
 neighbourhoods can be large in fragmented habitat, such that dispersing
 males can potentially settle in the presence of genetically similar
 females after moving considerable distances, thereby necessitating both a
 choice to emigrate and a choice of where to settle to avoid inbreeding.
description: Apparent emigration
 logistic GLMM dataData in Excel
 spreadsheet format for GLMM analysis of emigration patterns of male agile
 antechinus. Dispersal patterns were identified from the natal and
 post-dispersal locations of captured individuals, based on genotype
 matching of adults and young, genetic parentage analysis or assignment
 tests. Where necessary, column headers are explained in comments
 boxes.Settlement
 choices_mlogit_input_fileData in spreadsheet
 format for multinomial modelling of settlement choices by male agile
 antechinus. Dispersal events were identified by comparing the locations of
 animals captured at the juvenile and adult stages, and identified by
 genotype matching (parentage analysis and assignment tests were used for
 some individuals). Column headers are explained with comments boxes. Data
 are formatted for the mlogit R package ('long'
 format).Genotypes of agile
 antechinus at Tumut, NSW, AustraliaMultilocus
 microsatellite genotypes of agile antechinus sampled in fragmented habitat
 at Tumut, NSW, Australia. Data are in GenAlEx format.Genotypes.xlsx
DOI: 10.5061/dryad.7bn22
title: Data from: Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius)

description: Shallow population structure is generally reported for most marine fish
 and explained as a consequence of high dispersal, connectivity and large
 population size. Targeted gene analyses and more recently genome-wide
 studies have challenged such view, suggesting that adaptive divergence
 might occur even when neutral markers provide genetic homogeneity across
 populations. Here, 381 SNPs located in transcribed regions were used to
 assess large- and fine-scale population structure in the European hake
 (Merluccius merluccius), a widely distributed demersal species of high
 priority for the European fishery. Analysis of 850 individuals from 19
 locations across the entire distribution range showed evidence for several
 outlier loci, with significantly higher resolving power. While 299
 putatively neutral SNPs confirmed the genetic break between basins (FCT =
 0.016) and weak differentiation within basins, outlier loci revealed a
 dramatic divergence between Atlantic and Mediterranean populations (FCT
 range 0.275–0.705) and fine-scale significant population structure.
 Outlier loci separated North Sea and Northern Portugal populations from
 all other Atlantic samples and revealed a strong differentiation among
 Western, Central and Eastern Mediterranean geographical samples.
 Significant correlation of allele frequencies at outlier loci with
 seawater surface temperature and salinity supported the hypothesis that
 populations might be adapted to local conditions. Such evidence highlights
 the importance of integrating information from neutral and adaptive
 evolutionary patterns towards a better assessment of genetic diversity.
 Accordingly, the generated outlier SNP data could be used for tackling
 illegal practices in hake fishing and commercialization as well as to
 develop explicit spatial models for defining management units and stock
 boundaries.
description: Milano et al 2013
 Merluccius merluccius SNP dataMilano et al_Merluccius
 merluccius SNP data.txt
DOI: 10.5061/dryad.rv624
title: Data from: A global change in RNA polymerase II pausing during the Drosophila midblastula transition

description: Massive zygotic transcription begins in many organisms during the
 midblastula transition when the cell cycle of the dividing egg slows down.
 A few genes are transcribed before this stage but how this differential
 activation is accomplished is still an open question. We have performed
 ChIP-seq experiments on tightly staged Drosophila embryos and show that
 massive recruitment of RNA polymerase II (Pol II) with widespread pausing
 occurs de novo during the midblastula transition. However, ∼100 genes are
 strongly occupied by Pol II before this timepoint and most of them do not
 show Pol II pausing, consistent with a requirement for rapid transcription
 during the fast nuclear cycles. This global change in Pol II pausing
 correlates with distinct core promoter elements and associates a
 TATA-enriched promoter with the rapid early transcription. This suggests
 that promoters are differentially used during the zygotic genome
 activation, presumably because they have distinct dynamic properties.
description: Supplemental File
 1A
 spreadsheet summarizing our classification and analysis of pre-MBT and MBT
 gene groups. The first sheet gives an explanation for all column headings.
 The second sheet lists all data for all our annotated genes, including our
 ten custom transcripts. It includes the classifications into pre-MBT and
 MBT gene groups, the Pol II ChIP-seq enrichment values at the
 transcription start site (TSS) and transcription unit (TU) for all
 replicates, phastCon conservation scores, and the presence or absence of
 all core promoter motifs analyzed in this study, as well as the presence
 of the TATA element identified by de novo motif
 analysis.supplemental_file_1.xlsx
DOI: 10.82294/dvncoo9pc
title: COPUS. Territorio: Norte Santander. Sector: Educación. Año: 2025
title: Dato. Observación estructurada con el protocolo COPUS.

description: Información recopilada durante el año 2025 a partir de observaciones estructuradas realizadas con el protocolo COPUS, dirigidas a educadores artísticos pertenecientes a programas de formación en educación artística y cultural del sector Educación (educación formal) en el departamento de Norte de Santander.
DOI: 10.5061/dryad.mp4vb
title: Data from: Pilot study aging classification criteria for fledged juvenile white-winged doves

description: Nineteen eastern white-winged doves Zenaida asiatica asiatica were hatched
 and raised in captivity and used to develop an aging key that 1) quickly
 identifies juveniles based on a series of morphological features, and 2)
 provides estimates of juvenile age based on primary feather replacement.
 Birds were photographed every three days from 17 to 170 d posthatch to
 determine sequence of primary flight feather replacement; persistence of
 juvenile secondary coverts; and development of blue eye ring, black neck
 bars, and leg color. Eleven birds exhibited adult features such as absence
 of buffy-tipped primary coverts, blue eye-ring color, complete black neck
 bar, and red leg color at day 170 posthatch; two birds had these features
 as early as day 122. Replacement of primary feathers was variable among
 individuals beyond day 35 beginning with the third primary. Primary
 feather (primary notation P1–P10) replacement occurred gradually. By day
 170, 2 of 17 birds had replaced all primary feathers, 3 birds had fully
 molted P9 but not P10, 8 birds had begun molting P9 but not P10, and 4
 birds did not molt either P9 or P10. Increased variability in primary
 feather replacement occurred as juveniles progressed toward adulthood;
 this precluded accurate age estimates of older juveniles based exclusively
 on primary replacement. The present study provides a better understanding
 of the molting process that wildlife managers, biologists, and researchers
 can use at hunter check stations or during trapping and banding operations
 to separate age classes, which is necessary to establish hunting
 frameworks and to assess the population effects of harvest and other
 mortality factors. This pilot study provides the foundation needed for
 further investigations into developmental patterns of fledged juvenile
 white-winged doves and provides an aging key that represents an
 improvement over previous white-winged dove aging keys or reliance on
 aging keys of closely related species.
description: Table S1 WWD
 PrimariesMicrosoft Excel file
 containing data on primary feather replacement for 19 captive-raised
 juvenile eastern white-winged doves (Zenaida asiatica asiatica) during
 2008 at the Duane Leach Research Aviary, Texas A&M
 University-Kingsville.Table S2 WWD
 TraitsMicrosoft Excel file
 containing data on immature primary coverts, eye ring color, neck bar
 color, and leg color for 19 captive-raised juvenile eastern white-winged
 doves (Zenaida asiatica asiatica) during 2008 at the Duane Leach Research
 Aviary, Texas A&M University-Kingsville.Figure S1
 PrimariesGraphical representation
 of primary wing feather (P1–P10) descriptive statistics reported in Table
 1 for 19 captive-raised juvenile eastern white-winged doves (Zenaida
 asiatica asiatica) during 2008 at the Duane Leach Research Aviary, Texas
 A&M University-Kingsville.Reference S1
 KruseKruse KL (compiler).
 2012. Central Flyway harvest and population survey data book. Denver,
 Colorado: U.S. Fish and Wildlife Service.