cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8791826
title: Divergent gene expression through PI3K/akt signalling pathway cause different models of hypertrophy growth in chicken

description: RNA-Seq technology was used to investigate differences in the gene expression of pectoralis muscle tissue between two chicken breeds [Ross as commercial (rapidly growing) and Isfahani as Iranian local breed (slow-growing)]. Total RNA was isolated from breast muscle samples at end of 4 weeks of age and sequenced by an Illumina Hiseq 2000 sequencer. Hierarchical Indexing for Spliced Alignment of Transcripts (HISAT2) was applied to align clean reads to chicken reference genome. Then, Cufflinks package was used to assemble transcripts and identify significantly differentially expressed genes (DEGs). Between two groups, the 606 significantly DEGs were identified (<i>p</i>-adjusted ≤.05). The confirmation of RNA-seq data was performed by Quantitative real-time PCR (qRT-PCR), consistent expression results were found for 10 selected genes. This study identified DEGs that regulate peroxisome proliferator-activated receptors (PPAR) signalling and Phosphatidylinositol-3 kinase Akt (PI3K/Akt) pathways in the Commercial breed, which might contribute to its higher metabolism of energy and growth characteristics compared to the Native breed. Our results suggested that the different expression patterns of some interesting genes including the <i>PIK3IP1</i>, SGK1, <i>FOXO3</i>, <i>FBXO32, FBXO30, CUL3 and ASB1</i> in Native chicken might represent a cause for the poor growth performance for this breed than the Commercial breed.Research highlightsExpression patterns of PIK3IP1, FoxO3 and FBXO32 and some other genes might represent a cause for the poor growth performance in Native chickens.DEGs that regulate PPAR signalling and PI3K/Akt pathways, which might contribute to the higher metabolism of energy and growth characteristics in Commercial chickens.Some important candidate genes related to skeletal muscle growth is obtained. Expression patterns of PIK3IP1, FoxO3 and FBXO32 and some other genes might represent a cause for the poor growth performance in Native chickens. DEGs that regulate PPAR signalling and PI3K/Akt pathways, which might contribute to the higher metabolism of energy and growth characteristics in Commercial chickens. Some important candidate genes related to skeletal muscle growth is obtained.
DOI: 10.6084/m9.figshare.8791778
title: Manipulation_check_self_worth

description: Results of manipulation check. Participants completed (1) Scales Measuring Agency and Communion, then (2) reflected on situations when they either did something in line of their moral standards or outperformed other people in something. Afterwards (3) they completed three subscales of Crocker's Contingencies of Self-Worth (Virtue, Competition and Approval from others).<br>
DOI: 10.6084/m9.figshare.8791826.v1
title: Divergent gene expression through PI3K/akt signalling pathway cause different models of hypertrophy growth in chicken

description: RNA-Seq technology was used to investigate differences in the gene expression of pectoralis muscle tissue between two chicken breeds [Ross as commercial (rapidly growing) and Isfahani as Iranian local breed (slow-growing)]. Total RNA was isolated from breast muscle samples at end of 4 weeks of age and sequenced by an Illumina Hiseq 2000 sequencer. Hierarchical Indexing for Spliced Alignment of Transcripts (HISAT2) was applied to align clean reads to chicken reference genome. Then, Cufflinks package was used to assemble transcripts and identify significantly differentially expressed genes (DEGs). Between two groups, the 606 significantly DEGs were identified (<i>p</i>-adjusted ≤.05). The confirmation of RNA-seq data was performed by Quantitative real-time PCR (qRT-PCR), consistent expression results were found for 10 selected genes. This study identified DEGs that regulate peroxisome proliferator-activated receptors (PPAR) signalling and Phosphatidylinositol-3 kinase Akt (PI3K/Akt) pathways in the Commercial breed, which might contribute to its higher metabolism of energy and growth characteristics compared to the Native breed. Our results suggested that the different expression patterns of some interesting genes including the <i>PIK3IP1</i>, SGK1, <i>FOXO3</i>, <i>FBXO32, FBXO30, CUL3 and ASB1</i> in Native chicken might represent a cause for the poor growth performance for this breed than the Commercial breed.Research highlightsExpression patterns of PIK3IP1, FoxO3 and FBXO32 and some other genes might represent a cause for the poor growth performance in Native chickens.DEGs that regulate PPAR signalling and PI3K/Akt pathways, which might contribute to the higher metabolism of energy and growth characteristics in Commercial chickens.Some important candidate genes related to skeletal muscle growth is obtained. Expression patterns of PIK3IP1, FoxO3 and FBXO32 and some other genes might represent a cause for the poor growth performance in Native chickens. DEGs that regulate PPAR signalling and PI3K/Akt pathways, which might contribute to the higher metabolism of energy and growth characteristics in Commercial chickens. Some important candidate genes related to skeletal muscle growth is obtained.
DOI: 10.6084/m9.figshare.8791625
title: london pollution from Avian malaria-mediated population decline of a widespread iconic bird species

description: Parasites have the capacity to affect animal populations by modifying host survival, and it is increasingly recognized that infectious disease can negatively impact biodiversity. Populations of the house sparrow (<i>Passer domesticus</i>) have declined in many European towns and cities, but the causes of these declines remain unclear. We investigated associations between parasite infection and house sparrow demography across suburban London where sparrow abundance has declined by 71% since 1995. <i>Plasmodium relictum</i> infection was found at higher prevalences (averaging 74%) in suburban London house sparrows than previously recorded in any wild bird population in Northern Europe. Survival rates of juvenile and adult sparrows and population growth rate were negatively related to <i>Plasmodium relictum</i> infection intensity. Other parasites were much less prevalent and exhibited no relationship with sparrow survival and no negative relationship with population growth. Low rates of co-infection suggested sparrows were not immunocompromised. Our findings indicate that <i>P. relictum</i> infection may be influencing house sparrow population dynamics in suburban areas. The demographic sensitivity of the house sparrow to <i>P. relictum</i> infection in London might reflect a recent increase in exposure to this parasite.
DOI: 10.6084/m9.figshare.8791616
title: Parasites for population growth from Avian malaria-mediated population decline of a widespread iconic bird species

description: Parasites have the capacity to affect animal populations by modifying host survival, and it is increasingly recognized that infectious disease can negatively impact biodiversity. Populations of the house sparrow (<i>Passer domesticus</i>) have declined in many European towns and cities, but the causes of these declines remain unclear. We investigated associations between parasite infection and house sparrow demography across suburban London where sparrow abundance has declined by 71% since 1995. <i>Plasmodium relictum</i> infection was found at higher prevalences (averaging 74%) in suburban London house sparrows than previously recorded in any wild bird population in Northern Europe. Survival rates of juvenile and adult sparrows and population growth rate were negatively related to <i>Plasmodium relictum</i> infection intensity. Other parasites were much less prevalent and exhibited no relationship with sparrow survival and no negative relationship with population growth. Low rates of co-infection suggested sparrows were not immunocompromised. Our findings indicate that <i>P. relictum</i> infection may be influencing house sparrow population dynamics in suburban areas. The demographic sensitivity of the house sparrow to <i>P. relictum</i> infection in London might reflect a recent increase in exposure to this parasite.
DOI: 10.6084/m9.figshare.8791625.v1
title: london pollution from Avian malaria-mediated population decline of a widespread iconic bird species

description: Parasites have the capacity to affect animal populations by modifying host survival, and it is increasingly recognized that infectious disease can negatively impact biodiversity. Populations of the house sparrow (<i>Passer domesticus</i>) have declined in many European towns and cities, but the causes of these declines remain unclear. We investigated associations between parasite infection and house sparrow demography across suburban London where sparrow abundance has declined by 71% since 1995. <i>Plasmodium relictum</i> infection was found at higher prevalences (averaging 74%) in suburban London house sparrows than previously recorded in any wild bird population in Northern Europe. Survival rates of juvenile and adult sparrows and population growth rate were negatively related to <i>Plasmodium relictum</i> infection intensity. Other parasites were much less prevalent and exhibited no relationship with sparrow survival and no negative relationship with population growth. Low rates of co-infection suggested sparrows were not immunocompromised. Our findings indicate that <i>P. relictum</i> infection may be influencing house sparrow population dynamics in suburban areas. The demographic sensitivity of the house sparrow to <i>P. relictum</i> infection in London might reflect a recent increase in exposure to this parasite.
DOI: 10.6084/m9.figshare.8791616.v1
title: Parasites for population growth from Avian malaria-mediated population decline of a widespread iconic bird species

description: Parasites have the capacity to affect animal populations by modifying host survival, and it is increasingly recognized that infectious disease can negatively impact biodiversity. Populations of the house sparrow (<i>Passer domesticus</i>) have declined in many European towns and cities, but the causes of these declines remain unclear. We investigated associations between parasite infection and house sparrow demography across suburban London where sparrow abundance has declined by 71% since 1995. <i>Plasmodium relictum</i> infection was found at higher prevalences (averaging 74%) in suburban London house sparrows than previously recorded in any wild bird population in Northern Europe. Survival rates of juvenile and adult sparrows and population growth rate were negatively related to <i>Plasmodium relictum</i> infection intensity. Other parasites were much less prevalent and exhibited no relationship with sparrow survival and no negative relationship with population growth. Low rates of co-infection suggested sparrows were not immunocompromised. Our findings indicate that <i>P. relictum</i> infection may be influencing house sparrow population dynamics in suburban areas. The demographic sensitivity of the house sparrow to <i>P. relictum</i> infection in London might reflect a recent increase in exposure to this parasite.
DOI: 10.6084/m9.figshare.8791553
title: Codes for Figures from Derivation of delay equation climate models using the Mori-Zwanzig formalism

description: The codes needed to reproduce the results of the paper. For every figure there is a folder with the corresponding code.
DOI: 10.6084/m9.figshare.8791553.v1
title: Codes for Figures from Derivation of delay equation climate models using the Mori-Zwanzig formalism

description: The codes needed to reproduce the results of the paper. For every figure there is a folder with the corresponding code.
DOI: 10.6084/m9.figshare.8791514
title: Excel file from Mosquitoes cloak their legs to resist insecticides

description: Proteomics data
DOI: 10.6084/m9.figshare.8791505
title: Analysis code from Testing for a facultative locomotor mode in the acquisition of archosaur bipedality

description: A .R file containing the R code for the analysis used in this study.
DOI: 10.6084/m9.figshare.8791514.v1
title: Excel file from Mosquitoes cloak their legs to resist insecticides

description: Proteomics data
DOI: 10.6084/m9.figshare.8791505.v1
title: Analysis code from Testing for a facultative locomotor mode in the acquisition of archosaur bipedality

description: A .R file containing the R code for the analysis used in this study.
DOI: 10.6084/m9.figshare.8791448
title: hCINAP WT U2OS RNA-seq

description: hCINAP WT U2OS RNA-seq
DOI: 10.6084/m9.figshare.8791460
title: Supplemental Data-Yun Deng

description: Human physiological responses,subjective sensations and acute health symptoms during exposure to high temperatures at a moderate-intensity activity level
DOI: 10.6084/m9.figshare.8791460.v1
title: Supplemental Data-Yun Deng

description: Human physiological responses,subjective sensations and acute health symptoms during exposure to high temperatures at a moderate-intensity activity level
DOI: 10.6084/m9.figshare.8791460.v2
title: Supplemental Data-Yun Deng

description: Human physiological responses,subjective sensations and acute health symptoms during exposure to high temperatures at a moderate-intensity activity level
DOI: 10.6084/m9.figshare.8791460.v3
title: Supplemental Data-Yun Deng

description: Human physiological responses,subjective sensations and acute health symptoms during exposure to high temperatures at a moderate-intensity activity level
DOI: 10.6084/m9.figshare.8790035
title: Overall Categorised Dataset

description: this list was compiled by Hudson Borges, Andre Hora, Marco Tulio Valente for their paper Understanding the Factors that Impact the Popularity of GitHub Repositories.<br>https://docs.google.com/spreadsheets/d/1oOIyVTsuJU0aQKgV8H5jWQKzLovoycf9ZjtajqEU8dc/edit#gid=0<br>
DOI: 10.6084/m9.figshare.8790035.v2
title: Overall Categorised Dataset

description: this list was compiled by Hudson Borges, Andre Hora, Marco Tulio Valente for their paper Understanding the Factors that Impact the Popularity of GitHub Repositories.<br>https://docs.google.com/spreadsheets/d/1oOIyVTsuJU0aQKgV8H5jWQKzLovoycf9ZjtajqEU8dc/edit#gid=0<br>
DOI: 10.26180/5d1f2b59e66ea
title: Statistics and TKE Budgets of Beta = 0, 1, 39 Turbulent Boundary Layer DNS

description: The statistical properties are presented for the direct numerical simulation of a self-similar adverse pressure gradient (APG) turbulent boundary layer (TBL) at the verge of separation. The APG TBL has a momentum thickness-based Reynolds number range from 570 to 13, 800, with a self-similar region from 10, 000 to 12, 300. Within this domain the average non-dimensional pressure gradient parameter beta = 39. These properties are compared to those of a beta = 0 and 1 case. <br>The statistical properties and KE budgets of these three flows in the domain of interest are provided as ASCII files.<br><b>Properties:</b>Kinematic Viscosity = 0.000285714Density = 1<b><br></b><b>DATAFILES:</b><br>ASCII files:ZPG_Beta0.dat mildAPG_Beta1.dat strongAPG_Beta39.dat<br>ZPG_Beta0_KEbudgets.dat<br>mildAPG_Beta1_KEbudgets.dat<br>strongAPG_Beta39_KEbudgets.dat<br><br>Plots:uu_reynoldsstress.pdfuv_reynoldsstress.pdfvv_reynoldsstress.pdfww_reynoldsstress.pdfKE_budgets_Beta39_figshare.pdf<br><b><br></b><b>References:</b>Kitsios, V., Sekimoto, A., Atkinson, C., Sillero, J. A., Borrell, G., Gungor, A. G., et al. (2017). Direct numerical simulation of a self-similar adverse pressure gradient turbulent boundary layer at the verge of separation. <i>Journal of Fluid Mechanics</i>, <i>829</i>, 392–419. http://doi.org/10.1017/jfm.2017.549Kitsios, V., Atkinson, C., Sillero, J. A., Borrell, G., Gungor, A. G., Jiménez, J., & Soria, J. (2016). Direct numerical simulation of a self-similar adverse pressure gradient turbulent boundary layer. <i>International Journal of Heat and Fluid Flow</i>, <i>61</i>, 129–136. http://doi.org/10.1016/j.ijheatfluidflow.2016.04.008
DOI: 10.6084/m9.figshare.8790035.v1
title: Overall Categorised Dataset

description: this list was compiled by Hudson Borges, Andre Hora, Marco Tulio Valente for their paper Understanding the Factors that Impact the Popularity of GitHub Repositories.
DOI: 10.6084/m9.figshare.8789867
title: raw data.zip

description: The raw measurements are provided in the supplementary files 5. The raw data shows all of the datasets analyzed in this study, including the series matrix files and the platform information. In addition, raw data of TCGA containing clinical data, RNA-seq data, data for selection of recurrence-related genes and data for establishment of genomic-clinical nomogram.
DOI: 10.6084/m9.figshare.8789867.v1
title: raw data.zip

description: The raw measurements are provided in the supplementary files 5. The raw data shows all of the datasets analyzed in this study, including the series matrix files and the platform information. In addition, raw data of TCGA containing clinical data, RNA-seq data, data for selection of recurrence-related genes and data for establishment of genomic-clinical nomogram.
DOI: 10.6084/m9.figshare.8787179
title: Engagement or control? The impact of the Chinese environmental protection bureaus’ burgeoning online presence in local environmental governance

description: Since 2011, Chinese environmental authorities have undertaken a project of “occupying” online spaces and social media such as Weibo. This has been analysed alternatively as an attempt to improve environmental governance, or as a new tool of control over online environmental discourses. This article investigates the use of microblogs by 172 local environmental authorities in Shandong province, whose multi-level microblogging system is seen as a model for other provinces, analysing whether this system improves environmental governance, and whether this objective is impeded by practices aimed at controlling online environmental discourse. We find limited evidence of improved environmental governance, as attested by enhanced information disclosure and citizen engagement. Instead, Environmental Protection Bureau communication appears obstructed by floods of diversionary content. We suggest that while these behaviours are likely driven by misaligned incentives and fears of triggering social unrest, they also support the goal of discursive control by occupation.
DOI: 10.6084/m9.figshare.8787119
title: Data for "The role of actin protrusion dynamics in cell migration through a degradable viscoelastic extracellular matrix: Insights from a computational model"

description: Data accompanying manuscript "The role of actin protrusion dynamics in cell migration through a degradable viscoelastic extracellular matrix: Insights from a computational model" submitted to PLOS Computational model in July 2019 by Tommy Heck<br>The set contains data on:- smoothed particle hydrodynamics fibrillar ECM model validation- model parameter study- study on optimal number of simultaneous protrusions
DOI: 10.6084/m9.figshare.8787179.v1
title: Engagement or control? The impact of the Chinese environmental protection bureaus’ burgeoning online presence in local environmental governance

description: Since 2011, Chinese environmental authorities have undertaken a project of “occupying” online spaces and social media such as Weibo. This has been analysed alternatively as an attempt to improve environmental governance, or as a new tool of control over online environmental discourses. This article investigates the use of microblogs by 172 local environmental authorities in Shandong province, whose multi-level microblogging system is seen as a model for other provinces, analysing whether this system improves environmental governance, and whether this objective is impeded by practices aimed at controlling online environmental discourse. We find limited evidence of improved environmental governance, as attested by enhanced information disclosure and citizen engagement. Instead, Environmental Protection Bureau communication appears obstructed by floods of diversionary content. We suggest that while these behaviours are likely driven by misaligned incentives and fears of triggering social unrest, they also support the goal of discursive control by occupation.
DOI: 10.17608/k6.auckland.8787026
title: Kelp occurence records

description: This dataset contains the cleaned occurrence records of the laminarian kelp species downloaded from the Global Biodiversity Information Facility (GBIF 2017) and the Ocean Biogeographic Information System (OBIS 2017). <br>
DOI: 10.6084/m9.figshare.8786987
title: BECN1 promotes the migration of NSCLC cells through regulating the ubiquitination of Vimentin

description: BECN1/Beclin1 is one of the key proteins in autophagy regulation. However, the biological functions of BECN1 in non-small cell lung cancer (NSCLC) were obscure. Here, we found that neither BECN1 knockdown nor overexpression affected the proliferation of NSCLC cells. Surprisingly, BECN1 overexpression increased cell migration and knocking down BECN1 significantly reduced the migratory ability of NSCLC cells. We further demonstrated that BECN1 could interact with Vimentin and affected its K48-linked ubiquitination. What’s more, BECN1 could also interact with ubiquitin-specific peptidase 14 (USP14), the key de-ubiquitinase of Vimentin, and regulated USP14 mediated de-ubiquitination of Vimentin. Thus, our studies revealed an oncosupportive role of BECN1 in the migration of NSCLC cells through regulating the ubiquitination of Vimentin.
DOI: 10.17608/k6.auckland.8787026.v2
title: Kelp occurence records

description: the Global Biodiversity Information Facility (GBIF 2017) and the Ocean Biogeographic Information System (OBIS 2017). <br>
DOI: 10.6084/m9.figshare.8786987.v1
title: BECN1 promotes the migration of NSCLC cells through regulating the ubiquitination of Vimentin

description: BECN1/Beclin1 is one of the key proteins in autophagy regulation. However, the biological functions of BECN1 in non-small cell lung cancer (NSCLC) were obscure. Here, we found that neither BECN1 knockdown nor overexpression affected the proliferation of NSCLC cells. Surprisingly, BECN1 overexpression increased cell migration and knocking down BECN1 significantly reduced the migratory ability of NSCLC cells. We further demonstrated that BECN1 could interact with Vimentin and affected its K48-linked ubiquitination. What’s more, BECN1 could also interact with ubiquitin-specific peptidase 14 (USP14), the key de-ubiquitinase of Vimentin, and regulated USP14 mediated de-ubiquitination of Vimentin. Thus, our studies revealed an oncosupportive role of BECN1 in the migration of NSCLC cells through regulating the ubiquitination of Vimentin.
DOI: 10.17608/k6.auckland.8787026.v1
title: Kelp occurence records

description: the Global Biodiversity Information Facility (GBIF 2017) and the Ocean Biogeographic Information System (OBIS 2017). <br>
DOI: 10.6084/m9.figshare.8786840
title: Additional file 2: of Feasibility assessment of phenotyping cotton fiber maturity using infrared spectroscopy and algorithms for genotyping analyses

description: Comparisons of the observed infrared maturity (MIR) and crystallinity (CIIR) with the predicted phenotypes based on their DNA marker genotypes. ATR FT-IR spectra were measured from the second set composed of 80 F2 plants with various MIC values. MIR and CIIR values were determined by algorithms and compared with the predicted phenotypes based on their DNA marker genotypes as well as the observed MIC values and lint percentage. (XLSX 15 kb)