cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hwjz2a
title: Occurrence Download

description: A dataset containing 727 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sedum moranense Kunth)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 727 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077934-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npz7ks
title: Occurrence Download

description: A dataset containing 374357497 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 374357497 records from 8446 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0335981-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nv4k6n
title: Occurrence Download

description: A dataset containing 2677530 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Year is 2010",
 "Month is March"
 ]
}

 The dataset includes 2677530 records from 576 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001513-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3tmv6
title: Occurrence Download

description: A dataset containing 1335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alnus japonica (Thunb.) Steud.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Japan"
 ]
}

 The dataset includes 1335 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001523-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urvjts
title: Occurrence Download

description: A dataset containing 181091 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Coleção Entomológica Padre Jesus Santiago Moure (DZUP) - Coleoptera"
 ]
}

 The dataset includes 181091 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001526-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apdnkh
title: Occurrence Download

description: A dataset containing 2337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Canis lupus baileyi Nelson & Goldman, 1929"
 ]
}

 The dataset includes 2337 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001521-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5e3bv3
title: Occurrence Download

description: A dataset containing 181627 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de Thomas GAILLARD"
 ]
}

 The dataset includes 181627 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001525-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2s6atj
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Furnarius rufus (Gmelin, 1788)",
 "Year 2025-2025"
 ]
}

 The dataset includes 247 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001524-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3gr6n
title: Occurrence Download

description: A dataset containing 180896 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CA des structures-Observations opportunistes de la structure : NaturEssonne"
 ]
}

 The dataset includes 180896 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001527-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fsnwsq
title: Occurrence Download

description: A dataset containing 1660 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Batrachoseps gregarius Jockusch, Wake & Yanev, 1998)"
 ]
}

 The dataset includes 1660 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001528-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9r23py
title: Occurrence Download

description: A dataset containing 4933 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ptilotrigona lurida (Smith, 1854)"
 ]
}

 The dataset includes 4933 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001529-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pw8sg5
title: Occurrence Download

description: A dataset containing 795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudemys rubriventris (Le Conte, 1830)",
 "Year 2024-2024"
 ]
}

 The dataset includes 795 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001522-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15293101
title: Data for "Absence of Entanglement Growth in Dicke Superradiance"

description: This archive contains data and plotting scripts for the figures in 'Absence of Entanglement Growth in Dicke Superradiance'. Data is stored in JLD2 format.
DOI: 10.5281/zenodo.15293102
title: Data for "Absence of Entanglement Growth in Dicke Superradiance"

description: This archive contains data and plotting scripts for the figures in 'Absence of Entanglement Growth in Dicke Superradiance'. Data is stored in JLD2 format.
DOI: 10.15468/dl.3fu7pe
title: Occurrence Download

description: A dataset containing 181846 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Miscellaneous records held by BIS"
 ]
}

 The dataset includes 181846 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001534-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8fn7bm
title: Occurrence Download

description: A dataset containing 1441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salix gracilistyla Miq.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Japan"
 ]
}

 The dataset includes 1441 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001531-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gymxnd
title: Occurrence Download

description: A dataset containing 182252 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ICN - Herbário do Instituto de Ciências Naturais"
 ]
}

 The dataset includes 182252 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001532-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsyczt
title: Occurrence Download

description: A dataset containing 182418 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Non-vertebrate Paleontology, Jackson School Museum of Earth History, University of Texas at Austin"
 ]
}

 The dataset includes 182418 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001533-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vubnkr
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Batrachoseps incognitus Jockusch, Yanev & Wake, 2001)"
 ]
}

 The dataset includes 240 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001535-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ssdb99
title: Occurrence Download

description: A dataset containing 60074 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is MO herbarium - Missouri Botanical Garden - Amostras Brasileiras Repatriadas - Herbário Virtual REFLORA"
 ]
}

 The dataset includes 60074 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001540-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nu3kag
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Potamogeton pusillus L."
 ]
}

 The dataset includes 176 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001536-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjsvee
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "StateProvince is Texas",
 "TaxonKey is Leuconotopicus borealis (Vieillot, 1809)",
 "Year 2024-2024"
 ]
}

 The dataset includes 23 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001538-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9jkhm4
title: Occurrence Download

description: A dataset containing 29949 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February)",
 "TaxonKey is one of (Telephlebia godeffroyi Selys, 1883, Rhyothemis graphiptera (Rambur, 1842), Orthetrum caledonicum (Brauer, 1865), Orthetrum sabina (Drury, 1773), Hemigomphus heteroclytus Selys, 1854, Hemicordulia australiae (Rambur, 1842), Eusynthemis aurolineata (Tillyard, 1913), Eusynthemis brevistyla (Selys, 1871), Diplacodes bipunctata (Brauer, 1865), Cordulephya montana Tillyard, 1911, Austrogomphus amphiclitus (Selys, 1873), Austrogomphus guerini (Rambur, 1842), Austroaeschna cooloola Theischinger, 1991, Austroaeschna inermis Martin, 1901, Anax papuensis (Burmeister, 1839), Tramea loewii Kaup, 1866, Synthemis eustalacta (Burmeister, 1839), Orthetrum migratum Lieftinck, 1951, Orthetrum villosovittatum (Brauer, 1868), Nannophya australis Brauer, 1865, Hemigomphus gouldii (Selys, 1854), Hemicordulia tau Selys, 1871, Eusynthemis tillyardi Theischinger, 1995, Eusynthemis guttata (Selys, 1871), Diplacodes haematodes (Burmeister, 1839), Crocothemis nigrifrons (Kirby, 1894), Choristhemis flavoterminata (Martin, 1901), Austrogomphus ochraceus (Selys, 1869), Austroaeschna parvistigma Martin, 1901, Austroaeschna pulchra Tillyard, 1909, Antipodophlebia asthenes (Tillyard, 1916), Adversaeschna brevistyla (Rambur, 1842))"
 ]
}

 The dataset includes 29949 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001537-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6skec
title: Occurrence Download

description: A dataset containing 4074912 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tropicos MO Specimen Data"
 ]
}

 The dataset includes 4074912 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001544-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7uqth
title: Occurrence Download

description: A dataset containing 181714 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Marine benthic dataset (version 1) commissioned by UKOOA"
 ]
}

 The dataset includes 181714 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001547-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykq6wk
title: Occurrence Download

description: A dataset containing 179795 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Données LPO Réserves Naturelles Nationales - Données des réserves naturelles nationales gérées par la Ligue pour la protection des oiseaux (LPO)"
 ]
}

 The dataset includes 179795 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001546-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12706803
title: Dataset for "Benchmarking for the automated detection of southern yellow-cheeked crested gibbon calls from passive acoustic monitoring data"

description: Abstract from paper in prep...

"Benchmarking for the automated detection of southern yellow-cheeked crested gibbon calls from passive acoustic monitoring data"



Recent advances in deep learning and transfer learning have revolutionized our ability for the automated detection of acoustic signals from long-term recordings. Here, we provide a benchmark for the automated detection of southern yellow-cheeked crested gibbon calls recorded using passive acoustic monitoring in Jahoo, Cambodia. We compared the performance of support vector machines, a quasi-DenseNet architecture (Koogu), transfer learning with ResNet50 models trained on the ‘ImageNet’ dataset, and transfer learning with embeddings from a global birdsong model (BirdNET). We also investigated the impact of varying the number of training samples on the performance of these models. We found that BirdNET had superior performance with a smaller number of training samples, whereas Koogu and ResNet50 models only had acceptable performance with a larger number of training samples ( > 200). Effective automated detection approaches are critical for monitoring endangered species, like gibbons. Future work on other gibbon species will be informative. Code and data are publicly available for future benchmarking.  


 

Link to GitHub: https://github.com/DenaJGibbon/BirdNET-Performance-Comparison.

 

Please cite both if you use these data: 

Clink, D., Cross-Jaya, H., Kim, J., Ahmad, A. H., Hong, M., Sala, R., Birot, H., Agger, C., Vu, T. T., Thi, H. N., Chi, T. N., & Klinck, H. (2024). Dataset for "Benchmarking for the automated detection of southern yellow-cheeked crested gibbon calls from passive acoustic monitoring data" [Data set]. Zenodo. https://doi.org/10.5281/zenodo.12706803

Clink DJ, Cross-Jaya H, Kim J, Ahmad AH, Hong M, Sala R, Birot H, Agger C, Vu TT, Thi HN, Chi TN. Benchmarking for the automated detection and classification of southern yellow-cheeked crested gibbon calls from passive acoustic monitoring data. bioRxiv. 2024:2024-08.
DOI: 10.5281/zenodo.15292377
title: Dataset for "Benchmarking for the automated detection of southern yellow-cheeked crested gibbon calls from passive acoustic monitoring data"

description: "Benchmarking automated detection and classification approaches for long-term acoustic monitoring of endangered species: a case study on gibbons from Cambodia"



Recent advances in deep learning and transfer learning have revolutionized our ability for the automated detection of acoustic signals from long-term soundscape recordings. Here, we provide a benchmark for the automated detection of southern yellow-cheeked crested gibbon (Nomascus gabriellae) calls recorded in Jahoo, Cambodia. For the benchmarking, we compared the performance of support vector machines (SVMs), a quasi-DenseNet architecture (Koogu), transfer learning with ResNet50 models trained on the ‘ImageNet’ dataset (ResNet), and transfer learning with embeddings from a global birdsong model (BirdNET). We also investigated the impact of varying the number of training samples on the performance of these models. Transfer learning models based on BirdNET embeddings had superior performance with a smaller number of training samples, whereas Koogu and ResNet models only had acceptable performance with a larger number of training samples (>200 gibbon samples). We deployed the BirdNET-based model over > 130,000 hours of continuous soundscape data, which, after manual review, resulted in >12,000 verified true positive detections. We found that gibbon calling events occurred mostly in the early morning hours between 05:00 to 0:600 local time. We had fewer gibbon detections during the monsoon period and found substantial variation in spatial patterns of calling events across months and years. We show that automated detection can be used to investigate long-term spatial and temporal patterns of gibbon calling events. Reliable automated detection approaches are a critical first step for using passive acoustic monitoring to assess endangered gibbon populations at ecologically relevant temporal- and spatial-scales. 

 Detailed instructions regarding use are provided on GitHub.


Link to GitHub: https://github.com/DenaJGibbon/benchmark-gibbon-calls.

Please cite both if you use these data: 

Clink, D., Cross-Jaya, H., Kim, J., Ahmad, A. H., Hong, M., Sala, R., Birot, H., Agger, C., Vu, T. T., Thi, H. N., Chi, T. N., & Klinck, H. (2024). Dataset for "Benchmarking for the automated detection of southern yellow-cheeked crested gibbon calls from passive acoustic monitoring data" [Data set]. Zenodo. https://doi.org/10.5281/zenodo.12706803

Clink DJ, Cross-Jaya H, Kim J, Ahmad AH, Hong M, Sala R, Birot H, Agger C, Vu TT, Thi HN, Chi TN. Benchmarking for the automated detection and classification of southern yellow-cheeked crested gibbon calls from passive acoustic monitoring data. bioRxiv. 2024:2024-08.
DOI: 10.15468/dl.ssuhsk
title: Occurrence Download

description: A dataset containing 181023 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insektmobilen - National citizen science and DNA metabarcoding survey of flying insects in June 2018 and 2019"
 ]
}

 The dataset includes 181023 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001548-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gg7qq7
title: Occurrence Download

description: A dataset containing 2913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cryptomeria japonica (Thunb. ex L.f.) D.Don",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Japan"
 ]
}

 The dataset includes 2913 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001545-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dykkcu
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Batrachoseps incognitus Jockusch, Yanev & Wake, 2001)"
 ]
}

 The dataset includes 240 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001550-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fwafeu
title: Occurrence Download

description: A dataset containing 422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ptilotrigona pereneae (Schwarz, 1943)"
 ]
}

 The dataset includes 422 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001549-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15293124
title: Dissolved organic carbon concentration in four major river basins in China (Songhua River, Yellow River, Yangtze River, Pearl River)

description: Dissolved organic carbon concentration data were obtained through a systematic literature review of Chinese and English publications between 1997 and 2023 on the CNKI and Web of Science. Criteria for inclusion were as follows: (1) field-sampled data with clear coordinates and sampling times; (2) use of filter membranes with a pore size of 0.22–0.7 μm; (3) DOC content convertible to concentration units (mg L⁻¹, carbon basis); and (4) sampling of surface or mixed water to exclude stratification effects. Data were extracted from the main text, figures, tables, and supplementary materials of eligible studies. For papers without original data, digitization of graphs was performed to extract the required data.
DOI: 10.5281/zenodo.15293125
title: Dissolved organic carbon concentration in four major river basins in China (Songhua River, Yellow River, Yangtze River, Pearl River)

description: Dissolved organic carbon concentration data were obtained through a systematic literature review of Chinese and English publications between 1997 and 2023 on the CNKI and Web of Science. Criteria for inclusion were as follows: (1) field-sampled data with clear coordinates and sampling times; (2) use of filter membranes with a pore size of 0.22–0.7 μm; (3) DOC content convertible to concentration units (mg L⁻¹, carbon basis); and (4) sampling of surface or mixed water to exclude stratification effects. Data were extracted from the main text, figures, tables, and supplementary materials of eligible studies. For papers without original data, digitization of graphs was performed to extract the required data.