cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yshbf2
title: Occurrence Download

description: A dataset containing 122393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen, Occurrence evidence)",
 "Continent is Oceania",
 "Country is New Caledonia",
 "DatasetKey is one of (iNaturalist Research-grade Observations, The vascular plants collection (P) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris), Royal Botanic Gardens, Kew - Herbarium Specimens, United Herbaria of the University and ETH Zurich, Tropicos MO Specimen Data)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 122393 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043363-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13783692
title: Berita UII
DOI: 10.15468/dl.gpamab
title: Occurrence Download

description: A dataset containing 3794 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Tropicos MO Specimen Data",
 "Geometry POLYGON((-120 35.5,-114 35.5,-114 39.5,-120 39.5,-120 35.5))"
 ]
}

 The dataset includes 3794 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043382-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/xw0fkl
title: Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Grive draine 2010 - 2014 Coordonnées GPS Lambert 93

description: Aire de reproduction de l'espèce Grive draine fondée sur la présence de mâles chanteurs au printemps (avril – juin), à partir de points d’écoutes répartis le long d’itinéraires échantillons. Environ 5 000 points ont été visités chaque année entre 2010 et 2014
DOI: 10.15468/dl.28pt4x
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.6188 24.44913, -109.4688 24.44913, -109.4688 24.59913, -109.6188 24.59913, -109.6188 24.44913))"
 ]
}

 The dataset includes 37 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043383-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mefq25
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Amburana erythrosperma"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043384-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/pbi1ph
title: CardObs : Observations naturalistes issues de l'outil CardObs-Données de HAURAY Yann (SAPROX)

description: Données de HAURAY Yann intégrées dans le cadre du projet SAPROX
DOI: 10.15468/dl.kymdmz
title: Occurrence Download

description: A dataset containing 1772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.34973940313438",
 "DecimalLongitude is less than 6.35279895631877",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1772 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043385-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/ffbsvr
title: Otter Survey of Ireland 1982

description: Dataset with records of otter signs, and some fish species, made during the period of the survey.
DOI: 10.5281/zenodo.15748526
title: Intense Femtosecond Laser Pulses Scattering from Metal Surfaces
DOI: 10.5281/zenodo.15839369
title: Intense Femtosecond Laser Pulses Scattering from Metal Surfaces
DOI: 10.15468/dl.xbs9qk
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tropidurus jaguaribanus"
 ]
}

 The dataset includes 34 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043387-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/zgfa1f
title: SEWBReC Slime Molds (South East Wales)

description: All records of slime molds held by SEWBReC for the South East Wales region.
DOI: 10.15468/dl.fxf6pt
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.4688 24.44913, -109.3188 24.44913, -109.3188 24.59913, -109.4688 24.59913, -109.4688 24.44913))"
 ]
}

 The dataset includes 45 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043388-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13783708
title: Dataset jadwal event lariku.info
DOI: 10.15468/o8ku0a
title: Terrestrial mammals of Dobrogea Region, Romania

description: Occurrence records from the article "Conservation priorities for terrestrial mammals in Dobrogea Region, Romania" Iulia V. Miu, Gabriel B. Chișamera, Viorel D. Popescu, Ruben Iosif, Andreea Nita, Steluta Manolache, Viorel D. Gavril, Ioana Cobzaru, Laurentiu Rozylowicz.
DOI: 10.5066/p1hr67c5
title: Comparison of four snapshots of Watershed Boundary Dataset Twelve-Digit Hydrologic Units

description: This data release contains a registry and comparison of the representation of twelve-digit hydrologic unit code (HUC) hydrologic unit polygons from four snapshot versions of the Watershed Boundary Dataset (WBD). The four versions were chosen due to their pressence in broadly: National Hydrologic Dataset Plus V2.1 (nhdpv2) and National Hydrologic Dataset Plus High Resolution (nhdphr) products, use in the 2025 National Integrated Water Availability Assessment (niwaa), and the importance of the 2025 Watershed Boundary Dataset containing the final version of the Coterminous United States WBD (final). They are identified as “nhdpv2”, “nhdphr”, “niwaa”, and “final” respectively. Note that the niwaa WBD snapshot for the 2025 assessment is from 2020. File Summary: - The registry JSON file contains only the HUC identifier and date it was last edited for each of the four WBD snapshots. - The GPKG file contains the most recently geometry from one of the four snapshots for every HUC identifier in the registry. Note that polygons in this GPKG are the most recent and may overlap HUCs from earlier snapshots. It also contains attributes indicating whether a HUC was deprecated, which snapshots it exists in, and whether it changed from one snapshot to the next. - Four comma separated files, one for each snapshot comparison, contain polygon area attributes for the both the entire HUC polygon from each snapshot and each partial polygon implied by the spatial intersection of the compared pair of snapshots. Comparisons were performed for four pairs of snapshots: 1) nhdpv2 to nhdphr, 2) nhdpv2 to niwaa, 3) niwaa to final, and 4) nhdphr to final. The nhdphr snapshot is composed of several regional subset snapshots taken over the period that nhdphr was being produced. In contrast, the niwaa snapshot is a complete snapshot of the Watershed Boundary Dataset taken at a single point in time. Due to this, some hydrologic units defined in the nhdphr snapshot are older than those in the niwaa snapshot and others are newer. Because of this overlap, direct comparison of the nhdphr and niwaa snapshots was not possible. If additional comparisons not presented in this data release are required, the script used to generate the comparisons is included as an ancillary file.
DOI: 10.15468/dl.6prm5z
title: Occurrence Download

description: A dataset containing 1261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.35279895631877",
 "DecimalLongitude is less than 6.35585850950317",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1261 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043389-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17644408
title: Selective Shuttling of Electrons on Helium Using a CMOS Control Platform

description: Dataset for "Selective Shuttling of Electrons on Helium Using a CMOS Control Platform"
DOI: 10.5281/zenodo.17644407
title: Selective Shuttling of Electrons on Helium Using a CMOS Control Platform

description: Dataset for "Selective Shuttling of Electrons on Helium Using a CMOS Control Platform"
DOI: 10.34740/kaggle/dsv/13783707
title: Emerging_Developing_Markets
DOI: 10.15468/dl.wyh894
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.3188 24.44913, -109.1688 24.44913, -109.1688 24.59913, -109.3188 24.59913, -109.3188 24.44913))"
 ]
}

 The dataset includes 27 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043391-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kd56b
title: Occurrence Download

description: A dataset listing the 4447 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (New Zealand)",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 {
 "and" : [
 "GadmGid is one of (NZL.3.7_1, NZL.3.1_1, NZL.3.9_1, NZL.3.5_1)",
 "TaxonKey is one of (Plantae [GBIF Backbone Taxonomy], Tracheophyta [GBIF Backbone Taxonomy], Magnoliopsida [GBIF Backbone Taxonomy])"
 ]
 }
 ]
}

 The dataset's 4447 records were derived from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043372-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4w2x4m
title: Occurrence Download

description: A dataset containing 1028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 {
 "or" : [
 "Geometry POLYGON((-124.50631 48.74661,-124.49711 48.74661,-124.49711 48.84528,-124.50631 48.84528,-124.50631 48.74661))",
 "Geometry POLYGON((-124.49711 24.82373,-65.7488 24.82373,-65.7488 48.98191,-124.49711 48.98191,-124.49711 24.82373))"
 ]
 },
 "TaxonKey is Akebia quinata"
 ]
}

 The dataset includes 1028 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043390-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2p72qj
title: Occurrence Download

description: A dataset containing 597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arabidopsis neglecta"
 ]
}

 The dataset includes 597 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043392-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhhy8x
title: Occurrence Download

description: A dataset containing 272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salamandra salamandra gigliolii",
 "Year 1970-2025"
 ]
}

 The dataset includes 272 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043394-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p5q7wd
title: Occurrence Download

description: A dataset containing 1056 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.35585850950317",
 "DecimalLongitude is less than 6.35891806268756",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1056 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043393-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frfb2t
title: Occurrence Download

description: A dataset containing 147007 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pimpinella major",
 "HasCoordinate is true"
 ]
}

 The dataset includes 147007 records from 745 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043356-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29986714
title: Supplementary information_CEAM

description: DNA methylation signatures are highly cell type-specific, yet most epigenome-wide association studies (EWAS) are performed on bulk tissue, potentially obscuring critical cell type-specific patterns. Existing computational tools for detecting cell type-specific DNAm changes are often limited by the accuracy of cell type deconvolution algorithms. Here, we introduce CEAM (Cell-type Enrichment Analysis for Methylation), a robust and interpretable framework for cell type enrichment analysis in DNA methylation data. CEAM applies over-representation analysis with cell type-specific CpG panels from Illumina EPIC arrays derived from nuclei-sorted cortical post-mortem brains from neurologically healthy aged individuals. The constructed CpG panels were systematically evaluated using both simulated datasets and published EWAS results from Alzheimer’s disease, Lewy body disease, and multiple sclerosis. CEAM demonstrated resilience to shifts in cell type composition, a common confounder in EWAS, and remained accurate across a wide range of differentially methylated positions, underscoring its flexibility. Application to existing EWAS findings generated in neurodegenerative diseases revealed enrichment patterns concordant with established disease biology, confirming CEAM’s biological relevance. The workflow is publicly available as an interactive Shiny app (https://um-dementia-systems-biology.shinyapps.io/CEAM/) enabling rapid, interpretable analysis of cell type-specific DNAm changes from bulk EWAS.
DOI: 10.6084/m9.figshare.29986714.v3
title: Supplementary information_CEAM

description: DNA methylation signatures are highly cell type-specific, yet most epigenome-wide association studies (EWAS) are performed on bulk tissue, potentially obscuring critical cell type-specific patterns. Existing computational tools for detecting cell type-specific DNAm changes are often limited by the accuracy of cell type deconvolution algorithms. Here, we introduce CEAM (Cell-type Enrichment Analysis for Methylation), a robust and interpretable framework for cell type enrichment analysis in DNA methylation data. CEAM applies over-representation analysis with cell type-specific CpG panels from Illumina EPIC arrays derived from nuclei-sorted cortical post-mortem brains from neurologically healthy aged individuals. The constructed CpG panels were systematically evaluated using both simulated datasets and published EWAS results from Alzheimer’s disease, Lewy body disease, and multiple sclerosis. CEAM demonstrated resilience to shifts in cell type composition, a common confounder in EWAS, and remained accurate across a wide range of differentially methylated positions, underscoring its flexibility. Application to existing EWAS findings generated in neurodegenerative diseases revealed enrichment patterns concordant with established disease biology, confirming CEAM’s biological relevance. The workflow is publicly available as an interactive Shiny app (https://um-dementia-systems-biology.shinyapps.io/CEAM/) enabling rapid, interpretable analysis of cell type-specific DNAm changes from bulk EWAS.
DOI: 10.6084/m9.figshare.29986714.v4
title: Supplementary information_CEAM

description: DNA methylation signatures are highly cell type-specific, yet most epigenome-wide association studies (EWAS) are performed on bulk tissue, potentially obscuring critical cell type-specific patterns. Existing computational tools for detecting cell type-specific DNAm changes are often limited by the accuracy of cell type deconvolution algorithms. Here, we introduce CEAM (Cell-type Enrichment Analysis for Methylation), a robust and interpretable framework for cell type enrichment analysis in DNA methylation data. CEAM applies over-representation analysis with cell type-specific CpG panels from Illumina EPIC arrays derived from nuclei-sorted cortical post-mortem brains from neurologically healthy aged individuals. The constructed CpG panels were systematically evaluated using both simulated datasets and published EWAS results from Alzheimer’s disease, Lewy body disease, and multiple sclerosis. CEAM demonstrated resilience to shifts in cell type composition, a common confounder in EWAS, and remained accurate across a wide range of differentially methylated positions, underscoring its flexibility. Application to existing EWAS findings generated in neurodegenerative diseases revealed enrichment patterns concordant with established disease biology, confirming CEAM’s biological relevance. The workflow is publicly available as an interactive Shiny app (https://um-dementia-systems-biology.shinyapps.io/CEAM/) enabling rapid, interpretable analysis of cell type-specific DNAm changes from bulk EWAS.
DOI: 10.15468/dl.7aepba
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.1688 24.44913, -109.0188 24.44913, -109.0188 24.59913, -109.1688 24.59913, -109.1688 24.44913))"
 ]
}

 The dataset includes 43 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043395-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17644410
title: CircThread Dataset Deliverable 5.2 Sequence Overview

description: Dataset supporting Deliverable 5.2.
DOI: 10.5281/zenodo.17644409
title: CircThread Dataset Deliverable 5.2 Sequence Overview

description: Dataset supporting Deliverable 5.2.
DOI: 10.15468/dl.rvt2e3
title: Occurrence Download

description: A dataset containing 956 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.35891806268756",
 "DecimalLongitude is less than 6.36197761587196",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 956 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043398-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17644266
title: Datasets for "Rapid canalization of chromosome conformation-transcription fingerprints during embryogenesis revealed by fully-automated cell identity decoding with CeSCALE"

description: This dataset includes raw and processed data associated with the following preprint: 

Rapid canalization of chromosome conformation-transcription fingerprints during embryogenesis revealed by fully-automated cell identity decoding with CeSCALE

Konstantinos Ntemos, Fei Xu, Nour-Zaynab Bazzi, Geoffrey Fucile, Hermina Petric Maretic, Ivan Dokmanic, Susan E. Mango, Ahilya N. Sawh

 

doi: https://doi.org/10.1101/2025.10.22.684035 

 

Full context and detailed analysis of the provided raw and processed data can be found in the manuscript and in its associated code repositories.
DOI: 10.5281/zenodo.17644267
title: Datasets for "Rapid canalization of chromosome conformation-transcription fingerprints during embryogenesis revealed by fully-automated cell identity decoding with CeSCALE"

description: This dataset includes raw and processed data associated with the following preprint: 

Rapid canalization of chromosome conformation-transcription fingerprints during embryogenesis revealed by fully-automated cell identity decoding with CeSCALE

Konstantinos Ntemos, Fei Xu, Nour-Zaynab Bazzi, Geoffrey Fucile, Hermina Petric Maretic, Ivan Dokmanic, Susan E. Mango, Ahilya N. Sawh

 

doi: https://doi.org/10.1101/2025.10.22.684035 

 

Full context and detailed analysis of the provided raw and processed data can be found in the manuscript and in its associated code repositories.
DOI: 10.15468/dl.9whey5
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.0188 24.44913, -108.8688 24.44913, -108.8688 24.59913, -109.0188 24.59913, -109.0188 24.44913))"
 ]
}

 The dataset includes 61 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043399-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13012/b2idb-5494434_v1
title: BEPAM code and results for the publication 'Supplementing Biofuel Mandates with a Carbon Mitigation Policy Can Lead to Water Quality Co-benefits'

description: The dataset consists of: 
(1) The replication codes and data for the BEPAM model are contained in the "BEPAM_Supplementary Environment Policy Analysis.zip" 
(2) Simulation results from the BEPAM model are contained in "ModelOutputs.zip" under the "BEPAM_Supplementary Environment Policy Analysis.zip"
DOI: 10.15468/dl.pfegs2
title: Occurrence Download

description: A dataset containing 1233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.36197761587196",
 "DecimalLongitude is less than 6.36503716905635",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1233 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043401-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34965/i60498
title: 20249080