cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6279134.v1
title: Identification of sex-specific DNA methylation changes driven by specific chemicals in cord blood in a Faroese birth cohort

description: Faroe islanders consume marine foods contaminated with methylmercury (MeHg), polychlorinated biphenyls (PCBs), and other toxicants associated with chronic disease risks. Differential DNA methylation at specific CpG sites in cord blood may serve as a surrogate biomarker of health impacts from chemical exposures. We aimed to identify key environmental chemicals in cord blood associated with DNA methylation changes in a population with elevated exposure to chemical mixtures. We studied 72 participants of a Faroese birth cohort recruited between 1986 and 1987 and followed until adulthood. The cord blood DNA methylome was profiled using Infinium HumanMethylation450 BeadChips. We determined the associations of CpG site changes with concentrations of MeHg, major PCBs, other organochlorine compounds [hexachlorobenzene (HCB), <i>p,p’</i>-dichlorodiphenyldichloroethylene (<i>p,p’</i>-DDE) and <i>p,p’</i>-dichlorodiphenyltrichloroethane], and perfluoroalkyl substances. In a combined sex analysis, among the 16 chemicals studied, PCB congener 105 (CB-105) exposure was associated with the majority of differentially methylated CpG sites (214 out of a total of 250). In female-only analysis, only 73 CB-105 associated CpG sites were detected, 44 of which were mapped to genes in the ELAV1-associated cancer network. In males-only, methylation changes were seen for perfluorooctane sulfonate, HCB, and <i>p,p’-</i>DDE in 10,598, 1,238, and 1,473 CpG sites, respectively, 15% of which were enriched in cytobands of the X-chromosome associated with neurological disorders. In this multiple-pollutant and genome-wide study, we identified key epigenetic toxicants. The significant enrichment of specific X-chromosome sites in males implies potential sex-specific epigenome responses to prenatal chemical exposures.
DOI: 10.6084/m9.figshare.6279014
title: Influence of die-back syndrome on reproductive strategies within <i>Phragmites australis</i> populations

description: Sexual plant reproduction is a strategy that allows plant populations to increase genetic variability, and consequently to be more efficient in adapting to new environments and to overcome stress conditions. Here, we focus on the reproductive mode of <i>Phragmites australis</i>, an important sub-cosmopolite species that can spread both by clonal propagation and sexual reproduction. In Europe, <i>P. australis</i> is affected by severe decline (known as Reed Die-Back Syndrome or RDBS); this study aims to understand if in RDBS condition the reproductive strategy of <i>P. australis</i> was altered, based on the hypothesis that if stress occurs, plants are likely to use their energy to increase genetic variability to overcome the stress. Inflorescences in five Italian wetlands were sampled from healthy and RDBS-affected stands of <i>P. australis.</i> Seed production, seed viability and seed germination were evaluated, with germination monitored under two different water conditions: moist and submerged. Stress induced by RDBS appears to influence the reproductive strategy of <i>P. australis.</i> In RDBS-affected stands, seed production was significantly higher than healthy stands for four of five sites. Seed viability and germination were also higher in RDBS-affected stands, but these differences were lower and site dependent.
DOI: 10.6084/m9.figshare.6279011
title: A new species of the genus <i>Chrysotoxum</i> Meigen, 1803 (Diptera: Syrphidae) from Turkey

description: A new species of the genus <i>Chrysotoxum</i> (Diptera: Syrphidae), <i>Chrysotoxum bozdagensis</i> Nedeljković, Vujić & Hayat sp. n., collected from Bozdağ Mt., İzmir Province, Turkey is described and illustrated. <i>Chrysotoxum bozdagensis</i> sp. n. can be distinguished from the similar <i>Ch. octomaculatum</i> Curtis, 1837 by the presence of a black pile on the mesonotum and the colour of the legs. It is also similar to <i>Ch. elegans</i> Loew, 1841, from which it can be distinguished by the colour of the pile on the vertical triangle and scutellum, as well from the structure of the male genitalia. Additionally, <i>Ch. bozdagensis</i> sp. n. can be clearly distinguished from the latter two species by DNA sequence data. This new species increases the total number of <i>Chrysotoxum</i> species in Turkey to 18. http://www.zoobank.org/urn:lsid:zoobank.org:pub:7465AAEA-21E6-4F0F-984C-CD48BE75436F
DOI: 10.6084/m9.figshare.6279014.v1
title: Influence of die-back syndrome on reproductive strategies within <i>Phragmites australis</i> populations

description: Sexual plant reproduction is a strategy that allows plant populations to increase genetic variability, and consequently to be more efficient in adapting to new environments and to overcome stress conditions. Here, we focus on the reproductive mode of <i>Phragmites australis</i>, an important sub-cosmopolite species that can spread both by clonal propagation and sexual reproduction. In Europe, <i>P. australis</i> is affected by severe decline (known as Reed Die-Back Syndrome or RDBS); this study aims to understand if in RDBS condition the reproductive strategy of <i>P. australis</i> was altered, based on the hypothesis that if stress occurs, plants are likely to use their energy to increase genetic variability to overcome the stress. Inflorescences in five Italian wetlands were sampled from healthy and RDBS-affected stands of <i>P. australis.</i> Seed production, seed viability and seed germination were evaluated, with germination monitored under two different water conditions: moist and submerged. Stress induced by RDBS appears to influence the reproductive strategy of <i>P. australis.</i> In RDBS-affected stands, seed production was significantly higher than healthy stands for four of five sites. Seed viability and germination were also higher in RDBS-affected stands, but these differences were lower and site dependent.
DOI: 10.6084/m9.figshare.6279011.v2
title: A new species of the genus <i>Chrysotoxum</i> Meigen, 1803 (Diptera: Syrphidae) from Turkey

description: A new species of the genus <i>Chrysotoxum</i> (Diptera: Syrphidae), <i>Chrysotoxum bozdagensis</i> Nedeljković, Vujić & Hayat sp. n., collected from Bozdağ Mt., İzmir Province, Turkey is described and illustrated. <i>Chrysotoxum bozdagensis</i> sp. n. can be distinguished from the similar <i>Ch. octomaculatum</i> Curtis, 1837 by the presence of a black pile on the mesonotum and the colour of the legs. It is also similar to <i>Ch. elegans</i> Loew, 1841, from which it can be distinguished by the colour of the pile on the vertical triangle and scutellum, as well from the structure of the male genitalia. Additionally, <i>Ch. bozdagensis</i> sp. n. can be clearly distinguished from the latter two species by DNA sequence data. This new species increases the total number of <i>Chrysotoxum</i> species in Turkey to 18. http://www.zoobank.org/urn:lsid:zoobank.org:pub:7465AAEA-21E6-4F0F-984C-CD48BE75436F
DOI: 10.6084/m9.figshare.6279011.v1
title: A new species of the genus <i>Chrysotoxum</i> Meigen, 1803 (Diptera: Syrphidae) from Turkey

description: A new species of the genus <i>Chrysotoxum</i> (Diptera: Syrphidae), <i>Chrysotoxum bozdagensis</i> Nedeljković, Vujić & Hayat sp. n., collected from Bozdağ Mt., İzmir Province, Turkey is described and illustrated. <i>Chrysotoxum bozdagensis</i> sp. n. can be distinguished from the similar <i>Ch. octomaculatum</i> Curtis, 1837 by the presence of a black pile on the mesonotum and the colour of the legs. It is also similar to <i>Ch. elegans</i> Loew, 1841, from which it can be distinguished by the colour of the pile on the vertical triangle and scutellum, as well from the structure of the male genitalia. Additionally, <i>Ch. bozdagensis</i> sp. n. can be clearly distinguished from the latter two species by DNA sequence data. This new species increases the total number of <i>Chrysotoxum</i> species in Turkey to 18. http://www.zoobank.org/urn:lsid:zoobank.org:pub:7465AAEA-21E6-4F0F-984C-CD48BE75436F
DOI: 10.6084/m9.figshare.6279005
title: Starch granules: a data collection of 40 food species

description: A collection of starch granules synthesized in 40 food plants was assembled. After extraction and purification, samples were subjected to optic and scanning electron microscopy investigations. Detailed images and descriptions of the starch granules are provided, evidencing all their morphological and structural features. In particular, shape, size, position and visibility of the <i>hilum</i>, organization of the <i>lamellae</i>, presence of fissures and surface elements (i.e. pores, pressure facets), density of granules per mg of sample and percentage of amylose content were reported. Generally, the results showed that starch synthesis in organisms belonging to the same species or genus follows conserved patterns, although some differences can be always detected. In conclusion, the present work represents a starch Botanical Atlas fundamental for botanic, archaeological and food quality researches.
DOI: 10.6084/m9.figshare.6278939
title: Mimosa_Baoetal.txt

description: Data from manuscript titled: "Photosynthetic opportunity cost and energetic cost of a rapid leaf closure behavior in Mimosa pudica". Data is in tab-delimited .txt format. Metadata is in the .txt file.
DOI: 10.6084/m9.figshare.6278939.v1
title: Mimosa_Baoetal.txt

description: Data from manuscript titled: "Photosynthetic opportunity cost and energetic cost of a rapid leaf closure behavior in Mimosa pudica". Data is in tab-delimited .txt format. Metadata is in the .txt file.
DOI: 10.6084/m9.figshare.6276212
title: Detrital zircon U–Pb geochronology of Permian strata in the Galilee Basin, Queensland, Australia

description: The late Carboniferous to Triassic tectonic history of eastern Australia includes important periods of regional-scale crustal extension and contraction. Evidence for these periods of tectonism is recorded by the extensive Pennsylvanian (late Carboniferous) to Triassic basin system of eastern Australia. In this study, we investigate the use of U–Pb dating of detrital zircons in reconstructing the tectonic development of one of these basins, the eastern Galilee Basin of Queensland. U–Pb detrital zircon ages were obtained from samples of stratigraphically well-constrained Cisuralian and Lopingian (early and late Permian, respectively) sandstone in the Galilee Basin. Detrital zircons in these sandstones are dominated by a population with ages in the range of 300–250 Ma, and ages from the youngest detrital zircons closely approximate depositional ages. We attribute these two fundamental findings to (1) appreciable derivation of detrital zircons in the Galilee Basin from the New England Orogen of easternmost Australia and (2) syndepositional magmatism. Furthermore, Cisuralian sandstone of the Galilee Basin contains significantly more &gt;300 Ma detrital zircons than Lopingian sandstone. The transition in detrital zircon population, which is bracketed between 296 and 252 Ma based on previous high-precision U–Pb zircon ages from Permian ash beds in the Galilee Basin, corresponds with the Hunter–Bowen Orogeny and reflects a change in the Galilee Basin from an earlier extensional setting to a later foreland basin environment. During the Lopingian foreland basin phase, the individual depocentres of the Galilee and Bowen basins were linked to form a single and enormous foreland basin that covered &gt;300 000 km<sup>2</sup> in central and eastern Queensland.
DOI: 10.6084/m9.figshare.6276212.v1
title: Detrital zircon U–Pb geochronology of Permian strata in the Galilee Basin, Queensland, Australia

description: The late Carboniferous to Triassic tectonic history of eastern Australia includes important periods of regional-scale crustal extension and contraction. Evidence for these periods of tectonism is recorded by the extensive Pennsylvanian (late Carboniferous) to Triassic basin system of eastern Australia. In this study, we investigate the use of U–Pb dating of detrital zircons in reconstructing the tectonic development of one of these basins, the eastern Galilee Basin of Queensland. U–Pb detrital zircon ages were obtained from samples of stratigraphically well-constrained Cisuralian and Lopingian (early and late Permian, respectively) sandstone in the Galilee Basin. Detrital zircons in these sandstones are dominated by a population with ages in the range of 300–250 Ma, and ages from the youngest detrital zircons closely approximate depositional ages. We attribute these two fundamental findings to (1) appreciable derivation of detrital zircons in the Galilee Basin from the New England Orogen of easternmost Australia and (2) syndepositional magmatism. Furthermore, Cisuralian sandstone of the Galilee Basin contains significantly more &gt;300 Ma detrital zircons than Lopingian sandstone. The transition in detrital zircon population, which is bracketed between 296 and 252 Ma based on previous high-precision U–Pb zircon ages from Permian ash beds in the Galilee Basin, corresponds with the Hunter–Bowen Orogeny and reflects a change in the Galilee Basin from an earlier extensional setting to a later foreland basin environment. During the Lopingian foreland basin phase, the individual depocentres of the Galilee and Bowen basins were linked to form a single and enormous foreland basin that covered &gt;300 000 km<sup>2</sup> in central and eastern Queensland.
DOI: 10.6084/m9.figshare.6276179
title: XRD Allende and NWA6966 Bruker EVA and .cif

description: This files contains the raw XRD files for Bruker EVA. Additionally contained are.cif files for possible XRD patterns for Rietveld-analysis, also Bruker. Unfortunately, no export to a common file type was possible.
DOI: 10.6084/m9.figshare.6276176
title: Full surface MIR-reflectance spectra Allende and NWA6966

description: This files contains the data behind the mid-IR reflectance spectra from full surface scans in the paper. Note-mixed spectra were not used in the paper, but are available here.
DOI: 10.6084/m9.figshare.6276149
title: Data files reporting nest characteristics by colony from The non-additive effects of body size on nest architecture in a polymorphic ant

description: Data files include measurements for nest length, sand weight, and features used to describe nest complexity.
DOI: 10.6084/m9.figshare.6276149.v1
title: Data files reporting nest characteristics by colony from The non-additive effects of body size on nest architecture in a polymorphic ant

description: Data files include measurements for nest length, sand weight, and features used to describe nest complexity.
DOI: 10.6084/m9.figshare.6276146
title: Source code for analysis and figures from The non-additive effects of body size on nest architecture in a polymorphic ant

description: Source code for statistical tests, production of figures, and network drawings
DOI: 10.6084/m9.figshare.6276146.v1
title: Source code for analysis and figures from The non-additive effects of body size on nest architecture in a polymorphic ant

description: Source code for statistical tests, production of figures, and network drawings
DOI: 10.6084/m9.figshare.6276137
title: Drawings of networks from The non-additive effects of body size on nest architecture in a polymorphic ant

description: Drawings of each nest interpreted as a network
DOI: 10.6084/m9.figshare.6276137.v1
title: Drawings of networks from The non-additive effects of body size on nest architecture in a polymorphic ant

description: Drawings of each nest interpreted as a network
DOI: 10.6084/m9.figshare.6276092
title: Raw data for Ubi4-GFP protein expression under DHS+PHS treatment

description: Raw data for Ubi4-GFP protein expression under DHS+PHS treatment<br>
DOI: 10.6084/m9.figshare.6276092.v1
title: Raw data for Ubi4-GFP protein expression under DHS+PHS treatment

description: Raw data for Ubi4-GFP protein expression under DHS+PHS treatment<br>
DOI: 10.6084/m9.figshare.6276056
title: Datasets from Methods in Biostatistics in R

description: These are the tab and csv files from the Methods in Biostatistics with R Book
DOI: 10.6084/m9.figshare.6276056.v1
title: All Data

description: These are the tab and csv files from the Methods in Biostatistics with R Book
DOI: 10.6084/m9.figshare.6276029
title: Korda lake 22042018 TQ04686 88691 pt 2

description: Korda lake 22042018 TQ04686 88691 pt 2
DOI: 10.6084/m9.figshare.6276029.v1
title: Korda lake 22042018 TQ04686 88691 pt 2

description: Korda lake 22042018 TQ04686 88691 pt 2
DOI: 10.6084/m9.figshare.6275990
title: Supplementary material for "A genome-wide assay specifies only GreA as a transcription fidelity factor in Escherichia coli"

description: Table S1 Transcription errors and bases sequenced within protein coding regions<br>
DOI: 10.6084/m9.figshare.6275990.v1
title: Supplementary material for "A genome-wide assay specifies only GreA as a transcription fidelity factor in Escherichia coli"

description: Table S1 Transcription errors and bases sequenced within protein coding regions<br>
DOI: 10.6084/m9.figshare.6275930
title: Mid-IR-microscope data

description: This files contains the data behind the mid-IR reflectance spectra from microscope measurements in the paper. Note-mixed spectra were not used in the paper, but are available here.
DOI: 10.6084/m9.figshare.6275930.v1
title: Mid-IR-microscope data

description: This files contains the data behind the mid-IR reflectance spectra from microscope measurements in the paper. Note-mixed spectra were not used in the paper, but are available here.
DOI: 10.6084/m9.figshare.6275819
title: Korda Lake 19042018 TQ04686 88691 pt1

description: Korda Lake 19042018 TQ04686 88691 pt1
DOI: 10.6084/m9.figshare.6275819.v1
title: Korda Lake 19042018 TQ04686 88691 pt1

description: Korda Lake 19042018 TQ04686 88691 pt1
DOI: 10.6084/m9.figshare.6275816
title: PSU_20141029_ Allende.xlsx

description: These data are the PSU data from all Cu particles fired onto the Allende target.
DOI: 10.6084/m9.figshare.6275816.v1
title: PSU_20141029_ Allende.xlsx

description: These data are the PSU data from all Cu particles fired onto the Allende target.
DOI: 10.6084/m9.figshare.6275813
title: Supplementary Material for: Type 2 Diabetes Promotes Cell Centrosome Amplification via AKT-ROS-Dependent Signalling of ROCK1 and 14-3-3σ

description: <b><i>Background/Aims:</i></b> Type 2 diabetes is associated with oxidative stress and DNA damage which can cause centrosome amplification. Thus, the study investigated centrosome amplification in type 2 diabetes and the underlying mechanisms. <b><i>Methods:</i></b> Centrosome numbers in human peripheral blood mononuclear blood cells (PBMC) from healthy subjects and patients with type 2 diabetes were compared to access the association between type 2 diabetes and centrosome amplification. Colon cancer cells were used to investigate the molecular mechanisms underlying the centrosome amplification triggered by high glucose, insulin and palmitic acid. Western blot analysis was used to quantify the level of protein and protein phosphorylation. Immunofluorescent staining was performed to detect centrosomes. ROS was quantified using flow cytometry technique. Transcriptpmic profiling was performed using Illumina HiSeq<sup>TM</sup>500 platform. <b><i>Results:</i></b> We found that centrosome amplification was increased PBMC from the type 2 diabetic patients, which correlated with the levels of fasting blood glucose and HbA1c. High glucose, insulin and palmitic acid, alone or in combinations, induced ROS production and centrosome amplification. Together, they increased AKT activation as well as the expression, binding and centrosome translation of ROCK1 and 14-3-3σ. Results from further analyses showed that AKT-ROS-dependent upregulations of expression, binding and centrosome translocation of ROCK1 and 14-3-3σ was the molecular pathway underlying the centrosome amplification <i>in vitro</i> triggered by high glucose, insulin and palmitic acid. Moreover, the key <i>in vitro</i> molecular signalling events activated by high glucose, insulin and palmitic acid were verified in PBMC from the patients with type 2 diabetes. <b><i>Conclusion:</i></b> Our results show that type 2 diabetes promotes cell centrosome amplification, and suggest that the diabetic pathophysiological factors-activated AKT-ROS-dependent signalling of ROCK1 and 14-3-3σ is the underlying molecular mechanism.
DOI: 10.6084/m9.figshare.6275810
title: PSU_20141029_NWA.xlsx

description: These data are the PSU data from all Cu particles fired onto the NWA 6966 target.
DOI: 10.6084/m9.figshare.6275810.v1
title: PSU_20141029_NWA.xlsx

description: These data are the PSU data from all Cu particles fired onto the NWA 6966 target.
DOI: 10.6084/m9.figshare.6275762
title: Korda Lake 18042018 TQ 04686 88691 pt 4

description: Korda Lake 18042018 TQ 04686 88691 pt 4
DOI: 10.6084/m9.figshare.6275762.v1
title: Korda Lake 18042018 TQ 04686 88691 pt 4

description: Korda Lake 18042018 TQ 04686 88691 pt 4
DOI: 10.6084/m9.figshare.6275654
title: mon test fig

description: research bibli <br>
DOI: 10.6084/m9.figshare.6275654.v1
title: mon test fig

description: research bibli <br>
DOI: 10.6084/m9.figshare.6275531
title: Data from: The SNARC effect is associated with worse mathematical intelligence and poorer time estimation.

description: Data and R-scripts from study testing the relationship between evaluation/production of sub-second durations, mental rotation ability, mathematical intelligence, and spatial-numerical associations (SNARC effect).
DOI: 10.6084/m9.figshare.6275531.v1
title: Data from: The SNARC effect is associated with worse mathematical intelligence and poorer time estimation.

description: Data and R-scripts from study testing the relationship between evaluation/production of sub-second durations, mental rotation ability, mathematical intelligence, and spatial-numerical associations (SNARC effect).
DOI: 10.6084/m9.figshare.6275414
title: Supplementary Material for: Associations of Current Wheeze and Body Mass Index with Perennial and Seasonal Allergic Rhinitis in Young Adults

description: <b><i>Background:</i></b> The coexistence of asthma and allergic rhinitis (AR) and its distinct association with obesity have been reported. However, few studies have differentiated the two types of AR, i.e., perennial (PAR) and seasonal AR (SAR), with regard to their associations with asthma and obesity. The aim of this study was to evaluate the coexistence of current wheeze and two types of AR and the impact of body mass index (BMI) on these two conditions in Japanese young adults. <b><i>Methods:</i></b> First-year students from Hokkaido University were enrolled into this study from 2011 to 2016. A questionnaire survey including the prevalence of current wheeze, PAR, and SAR every year for 11,917 nonsmoking young adults was conducted. The difference in the impact of current wheeze and BMI on these two types of AR was separately evaluated. <b><i>Results:</i></b> Although both PAR and SAR were significantly associated with current wheeze, the impact of these two AR types on current wheeze was different (OR for PAR = 2.46 vs. OR for SAR = 1.29). When we classified all of the subjects into 4 groups with or/and without the two types of AR, the prevalence of current wheeze was significantly higher in subjects with PAR than in those without PAR (<i>p</i> &lt; 0.001). However, the prevalence of current wheeze did not differ between subjects with or without SAR. Multinomial regression analyses showed that the association of wheeze with PAR and/or SAR was stronger compared to that of wheeze with SAR without PAR. The prevalence of PAR was not associated with BMI. Contrarily, a low BMI was significantly associated with a high SAR prevalence (<i>p</i> &lt; 0.05). <b><i>Conclusion:</i></b> Comparisons between PAR and SAR showed that the conditions are differentially associated with current wheeze and BMI.