cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.35r27v6
title: Data from: High species diversity and turnover in granite inselberg floras highlight the need for a conservation strategy protecting many outcrops

description: Determining patterns of plant diversity on granite inselbergs is an
 important task for conservation biogeography due to mounting threats.
 However, beyond the tropics there are relatively few quantitative studies
 of floristic diversity, or consideration of these patterns and their
 environmental, biogeographic and historical correlates for conservation.
 We sought to contribute broader understanding of global patterns of
 species diversity on granite inselbergs and inform biodiversity
 conservation in the globally significant Southwest Australian Floristic
 Region (SWAFR). We surveyed floristics from 16 inselbergs (478 plots)
 across the climate gradient of the SWAFR stratified into three major
 habitats on each outcrop. We recorded 1060 species from 92 families. At
 the plot level, local soil and topographic variables affecting aridity
 were correlated with species richness in herbaceous (HO) and woody
 vegetation (WO) of soil-filled depressions, but not in woody vegetation on
 deeper soils at the base of outcrops (WOB). At the outcrop level,
 bioclimatic variables affecting aridity were correlated with species
 richness in two habitats (WO and WOB) but, contrary to predictions from
 island biogeography, were not correlated with inselberg area and isolation
 in any of the three habitats. Species turnover in each of the three
 habitats was also influenced by aridity, being correlated with bioclimatic
 variables and with inter-plot geographic distance, and for HO and WO
 habitats with local site variables. At the outcrop level, species
 replacement was the dominant component of species turnover in each of the
 three habitats, consistent with expectations for long-term stable
 landscapes. Our results therefore highlight high species diversity and
 turnover associated with granite outcrop flora. Hence, effective
 conservation strategies will need to focus on protecting multiple
 inselbergs across the entire climate gradient of the region.
description: Yatesetal_2019_PlantDiversity_Inselbergs_PlotSpeciesYatesetal _2019_PlantDiversity_Inselbergs_PlotEnvironmentYatesetal_2019_PlantDiversity_Inselbergs_SpeciesCodes_Names
DOI: 10.5061/dryad.4b562r8
title: Data from: Canopy disturbance and gap partitioning promote the persistence of a pioneer tree population in a near-climax temperate forest of the Qinling Mountains, China

description: An unresolved question of temperate forests is how pioneer tree species
 persist in mature forests. In order to understand the responsible
 mechanisms, we investigated a near-climax mixed temperate forest dominated
 by Betula albosinensis in the Qinling Mountains of China. Through
 establishing four 50 m × 50 m plots, we examined the canopy disturbance
 characteristics and its effects on tree recruitments. We further test the
 intra- and interspecific effects on the recruitment of B. albosinensis.
 The obtained data demonstrated canopy disturbance was frequent but most
 small-sized. The canopy gaps are caused mainly by adult B. albosinensis by
 snapping. The regeneration of coexistent tree species shows distinct
 preference for gap size. B. albosinensis were clumped at the juvenile
 stage and small scales. B. albosinensis juveniles were positively
 associated with B. utilis juveniles and negatively associated with the
 conspecific and B. utilis large trees. In addition, B. albosinensis
 juveniles showed negative associations with contemporary other tree
 species. Our results suggested that canopy disturbance caused by canopy
 trees and gap partitioning among the coexistent tree species are important
 for the persistence of the mixed forest. As a main gapmaker, B.
 albosinensis appear to develop a self-perpetuating life-history trait and
 allow them to persist.
description: Sampling locations and
 gap investigational data
DOI: 10.5061/dryad.tb21f30
title: Data from: Using drones and sirens to elicit avoidance behaviour in white rhinoceros as an anti-poaching tactic

description: Poaching fuelled by international trade in horn caused the deaths of over
 1000 African rhinoceros (Ceratotherium simum and Diceros bicornis) per
 year between 2013 and 2017. Deterrents, which act to establish avoidance
 behaviours in animals, have the potential to aid anti-poaching efforts by
 moving at-risk rhinos away from areas of danger (e.g. near perimeter
 fences). To evaluate the efficacy of deterrents, we exposed a population
 of southern white rhinos (C. simum simum) to acoustic- (honeybee, siren,
 turtledove), olfactory- (chilli, sunflower) and drone-based stimuli on a
 game reserve in South Africa. We exposed rhinos to each stimulus up to
 four times. Stimuli were considered effective deterrents if they
 repeatedly elicited avoidance behaviour (locomotion away from the
 deterrent). Rhinos travelled significantly further in response to the
 siren than to the honeybee or turtledove stimulus, and to low altitude
 drone flights than to higher altitude flights. We found the drone to be
 superior at manipulating rhino movement than the siren due to its longer
 transmission range and capability of pursuit. In contrast, the scent
 stimuli were ineffective at inciting avoidance behaviour. Our findings
 indicate that deterrents are a prospective low-cost and in situ method to
 manage rhino movement in game reserves.
description: Rhino behavioural
 responses to deterrentsBehavioural data were
 collected from a population of free-ranging white rhinos in response to
 acoustic, olfactory and drone-based stimuli. Columns indicate deterrent
 type, treatment type, replicate number per rhino, subject ID, age-sex
 class and behavioural responses.Penny_et_al_dataset.txt
DOI: 10.60905/dfjg4s
title: Registro Marcha 12 de Mayo

description: &lt;p&gt;Registro de la participaci��n del Movimiento Barrial Zona 2 en la marcha Nacional del 12 de Mayo de 2021. &lt;/p&gt;
description: <br> Inicio y ascenso de la Paro Nacional #28A. 28 de abril al 28 de julio de 2021
DOI: 10.5061/dryad.74m1689
title: Data from: Common alien plants are more competitive than rare natives but not than common natives

description: Success of alien plants is often attributed to high competitive ability.
 However, not all aliens become dominant, and not all natives are
 vulnerable to competitive exclusion. Here, we quantified competitive
 outcomes and its determinants, using response-surface experiments, in 48
 pairs of native and naturalized alien annuals that are common or rare in
 Germany. Overall, aliens were not more competitive than natives. However,
 common aliens (invasive) were, despite strong limitation by intraspecific
 competition, more competitive than rare natives. This is because alien
 species had higher intrinsic growth rates than natives, and common species
 had higher intrinsic growth rates than rare ones. Strength of
 Interspecific competition was not related to status or commonness. Our
 work highlights the importance of including commonness in understanding
 invasion success. It suggests that variation among species in intrinsic
 growth rates is more important in competitive outcomes than inter- or
 intraspecific competition, and thus contributes to invasion success and
 rarity.
description: metadatainfomation about variablesbiomassAboveground biomass of each individuals at the end of growing seasonrecruitrecruit data in the second yearresid_timeFirst year of records in Germany of nine study alien species
DOI: 10.5061/dryad.t5nv542
title: Data from: Pest consumption in a vineyard system by the lesser horseshoe bat (Rhinolophus hipposideros)

description: Herbivorous arthropods cause immense damage in crop production annually.
 Consumption of these pests by insectivorous animals is claimed to be
 crucial to counteract their adverse effects. Bats are considered amongst
 the most voracious predators of arthropods, of which some species are
 known to consume crop pests. In vineyard dominated Mediterranean
 agroecosystems, several crops are damaged by the attack of insect pests.
 In this study we therefore aimed 1) to explore the diet and pest
 consumption of the lesser horseshoe bat Rhinolophus hipposideros and 2)
 analyse whether the composition of pest species in its diet changes
 throughout the season. For that, we employed a dual-primer DNA
 metabarcoding analysis of DNA extracted from faeces collected in three bat
 colonies of a wine region in Southwestern Europe during the whole active
 period of most pest species. Overall, 395 arthropod prey species belonging
 to 11 orders were detected; lepidopterans and dipterans were the most
 diverse orders in terms of species. Altogether, 55 pest species were
 identified, among them 25 are major pests and 8 are regarded as pests
 affecting grapevines. The composition of pest species in faeces changed
 significantly with season. As a whole, the results suggest that R.
 hipposideros acts as a suppressor of a wide array of agricultural pests in
 Mediterranean agroecosystems. Therefore, appropriate management measures
 to favour the growth of this bat populations should be considered.
description: ZOTU
 sequencesZOTU sequences obtained
 from DNA extracted from faeces of Rhinolophus hipposideros in a vineyard
 system.Baroja.et.al_Plos.One.txt
DOI: 10.5061/dryad.h69t34v
title: Data from: Modelling social care provision in an agent-based framework with kinship networks

description: Current demographic trends in the UK include a fast-growing elderly
 population and dropping birth rates, and demand for social care amongst
 the aged is rising. The UK depends on informal social care -- family
 members or friends providing care -- for some 50% of care provision.
 However, lower birth rates and a graying population mean that care
 availability is becoming a significant problem, causing concern amongst
 policy-makers that substantial public investment in formal care will be
 required in decades to come. In this paper we present an agent-based
 simulation of care provision in the UK, in which individual agents can
 decide to provide informal care, or pay for private care, for their loved
 ones. Agents base these decisions on factors including their own health,
 employment status, financial resources, relationship to the individual in
 need, and geographical location. Results demonstrate that the model can
 produce similar patterns of care need and availability as is observed in
 the real world, despite the model containing minimal empirical data. We
 propose that our model better captures the complexities of social care
 provision than other methods, due to the socioeconomic details present and
 the use of kinship networks to distribute care amongst family members.
description: OutputsBenchmarkContains the outputs of the benchmark simulation.OutputsPolicy1Contains the outputs of the simulation with the implementation of Policy 1OutputsPolicy2Contains the outputs of the simulation with the implementation of Policy 2sensitivityAnalysisDataContains the data for the 5-parameter sensitivity analysis.
DOI: 10.15468/dl.4hnxbd
title: Occurrence Download

description: A dataset containing 1304 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 PRINTF('%04d-%02d-%02d', "year", "month", "day") yearmonthday,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, PRINTF('%04d-%02d-%02d', "year", "month", "day"))) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, PRINTF('%04d-%02d-%02d', "year", "month", "day"))) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, PRINTF('%04d-%02d-%02d', "year", "month", "day"))) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, PRINTF('%04d-%02d-%02d', "year", "month", "day"))) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, PRINTF('%04d-%02d-%02d', "year", "month", "day"))) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, PRINTF('%04d-%02d-%02d', "year", "month", "day"))) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.datasetkey = 'd937f959-a05a-4ea4-93b9-a38d97eb3555'
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.classificationdetails['d7dddbf4-2cf0-4f39-9b2a-bb099caae36c']['specieskey'] &lt;&gt; '' AND occurrence."year" IS NOT NULL AND occurrence."month" IS NOT NULL AND occurrence."day" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 PRINTF('%04d-%02d-%02d', "year", "month", "day")

 The dataset's 1304 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001764-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.28d5v76
title: Data from: Do prey select for vacant hunting domains to minimize a multi-predator threat?

description: Many ecosystems contain sympatric predator species that hunt in different
 places and times. We tested whether this provides vacant hunting domains,
 places and times where and when predators are least active, that prey use
 to minimize threats from multiple predators simultaneously. We measured
 how northern Yellowstone elk (Cervus elaphus) responded to wolves (Canis
 lupus) and cougars (Puma concolor), and found that elk selected for areas
 outside the high‐risk domains of both predators consistent with the vacant
 domain hypothesis. This enabled elk to avoid one predator without
 necessarily increasing its exposure to the other. Our results demonstrate
 how the diel cycle can serve as a key axis of the predator hunting domain
 that prey exploit to manage predation risk from multiple sources. We argue
 that a multi‐predator, spatiotemporal framework is vital to understand the
 causes and consequences of prey spatial response to predation risk in
 environments with more than one predator.
description: Step-selection function
 datasetThis dataset includes
 used and available locations for the Step-Selection Function analyses.
 Additional variables includes topographic roughness (TRI) and vegetation
 openness (open) as well as wolf (wolf_5hr) and male (male_cat) and female
 (fem_cat) activity schedules at the corresponding hour of day. Original
 elk GPS data can be downloaded here: DOI:
 https://doi.org/10.5061/dryad.mr0rg45.2/1.2SSF_dataset_northern
 yellowstone elk.csvActivity
 SchedulesThis includes the
 activity schedule by hour for both wolves (wolf_5hr) and male (Male_cat)
 and female (Fem_cat) cougars. Values were calculated from a generalized
 additive mixed model. See manuscript for methods.predatoractivityschedules.csv
DOI: 10.5061/dryad.1r237v7
title: Data from: Auriculotherapy in the prevention of postoperative urinary retention in patients with thoracotomy and thoracic epidural analgesia: a randomized, double-blinded trial

description: Background: Thoracic epidural analgesia is associated with a high rate of
 postoperative urine retention (POUR). Auriculotherapy can reduce visceral
 dysfunction and can be helpful in anesthesiology and pain control. The aim
 of this study was to test the efficacy of preoperative auriculotherapy to
 decrease the occurrence of POUR. Methods: This single-center,
 double-blinded, two-arm randomized study was performed between January
 2015 and May 2016 in a tertiary care university hospital. Male patients
 scheduled for an elective lung surgical procedure under combined general
 anesthesia and thoracic epidural analgesia were included. Auriculotherapy
 (A group) was performed once the patient was under general anesthesia with
 five semi-permanent needles inserted in both ears at the “Shen Men”,
 “bladder”, “pelvic parasympathetic”, “anterior hypothalamus”, and “frontal
 lobe” points). Five small round patches of adhesive pads were positioned
 bilaterally at the same points in the Control group (C group). The main
 outcome measure was the requirement for bladder catheterization during the
 day and the first night following surgery. Results: Fifty-three patients
 were randomized and 25 analyzed in each group. Requirement for bladder
 catheterization was different between groups: 24 C group patients (96%)
 and 18 A group patients (72%) (p=0.049, Fisher exact test; Odds Ratio=0.11
 [0.01–0.95]. The number of patients needed to treat with auriculotherapy
 to avoid one case of bladder catheterization was four. No adverse effect
 was observed due to auriculotherapy. Conclusion: This study demonstrates
 that auriculotherapy is a safe and useful technique reducing POUR in
 thoracotomy patients benefiting from thoracic epidural analgesia.
description: Rupo - Data
 Base
DOI: 10.5061/dryad.4m6j54g
title: Data from: Recurrent losses and rapid evolution of the condensin II complex in insects

description: Condensins play a crucial role in the organization of genetic material by
 compacting and disentangling chromosomes. Based on studies in a few model
 organisms, the condensin I and condensin II complexes are considered to
 have distinct functions, with the condensin II complex playing a role in
 meiosis and somatic pairing of homologous chromosomes in Drosophila.
 Intriguingly, the Cap-G2 subunit of condensin II is absent in Drosophila
 melanogaster, and this loss may be related to the high levels of
 chromosome pairing seen in flies. Here, we find that all three non-SMC
 subunits of condensin II (Cap-G2, Cap-D3, and Cap-H2) have been repeatedly
 and independently lost in taxa representing multiple insect orders, with
 some taxa lacking all three. We also find that all non-Dipteran insects
 display near-uniform low pairing levels regardless of their condensin II
 complex composition, suggesting that some key aspects of genome
 organization are robust to condensin II subunit losses. Finally, we
 observe consistent signatures of positive selection in condensin subunits
 across flies and mammals. These findings suggest that these ancient
 complexes are far more evolutionarily labile than previously suspected,
 and are at the crossroads of several forms of genomic conflicts. Our
 results raise fundamental questions about the specific functions of the
 two condensin complexes in taxa that have experienced subunit losses, and
 open the door to further investigations to elucidate the diversity of
 molecular mechanisms that underlie genome organization across various life
 forms.
description: Condensin BLAST
 alignmentsContains results of
 BLAST searches against contig DNA for all species analyzed in this paper.
 Data is subdivided by order, with additional subsections for condensin
 subunit sequences from species used as bait. “Lost subunits” subsection
 indicates subunits that were missed in the initial searches performed with
 standard bait sequences and were redone with close relative sequences,
 sometimes revealing hits.Duplication
 alignmentsThis folder contains
 full results and alignments for BLAST searches looking for compensatory
 duplications in condensin I subunits.Condensin
 PAMLContains data relating
 to positive selection analysis, including the PAML control file, all
 alignments, species lists, and max dS and average dN/dS
 information.
DOI: 10.5061/dryad.m70p89d
title: Data from: AviaNZ: a future-proofed program for annotation and recognition of animal sounds in long-time field recordings

description: The routine collection of long‐time acoustic recordings of animals in the
 field presents new challenges in data analysis. While many terabytes of
 data are collected annually, effective use of this noisy, highly variable
 data require skilled humans to manually identify calls. While computer
 programs to automatically analyse these recordings are becoming available,
 it is important that they are user‐friendly and easy‐to‐use, so that
 everybody – citizen scientists, wildlife managers, researchers – can take
 advantage of them, and that they keep the human in the loop so analyses
 carried out this year are comparable both to manual call counts from the
 past, and more accurate automated analyses performed in the future. We
 present the AviaNZ program, which is designed to achieve these goals: the
 software includes methods for simple, rapid manual annotation of
 recordings, denoising and segmentation methods, and a training procedure
 by which the user can prepare their own filters to automatically recognize
 individual species. The software can run in batch mode, automatically
 processing folders of field recordings, and then present the outputs to
 enable the quick and easy review of the results. Finally, the outputs are
 presented in a variety of spreadsheets to enable different statistical
 analyses to be performed. We describe the various workflows of manually
 and semi‐automatically processing sound files, annotating them to train
 automatic filters, using those filters in batch mode, and how the software
 facilitates rapid evaluation of the automated analysis. A demonstration of
 the software, comparing manual and automatic detection of calls of the
 little spotted kiwi Apteryx owenii is given. It shows that while the
 automatic detection does produce false positives, human correction of
 these is far faster than manual review of the whole sound file. AviaNZ is
 a freely available open‐source standalone program. Our experience shows
 that it can be used by anybody quickly and easily. However, for
 experienced users it is easily customizable and extendable. By enabling
 everybody involved with acoustic bird recording to quickly and easily
 analyse their own data, while future‐proofing it by keeping the human in
 the loop, we are enabling acoustic field recordings to meet their
 potential.
description: Zealandia Nocturnal
 Soundscape Oct 6th 2018This is the sound (.wav)
 and annotation files (.data; AviaNZ format) for the soundscape of
 Zealandia Ecosanctuary (Wellington, New Zealand) for the night of 6th
 October 2018. There are also trained AviaNZ filters for Little Spotted
 Kiwi (Apteryx owenii) and the sound files for the training data. The
 contents are in the README.Zealandia061018.tar.gz