cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/pg6whc5c9x
title: Data from: Geographic separation and genetic differentiation of populations are not coupled with niche differentiation in threatened Kaiser’s spotted newt (Neurergus kaiseri)

description: Geographic separation and genetic differentiation of populations are not coupled with niche differentiation in threatened Kaiser’s spotted newt (Neurergus kaiseri) Journal: Scientific Reports DOI: 10.1038/s41598-019-41886-8
DOI: 10.17632/z5nhsnxrk8
title: Data for: Trust perceptions among residents surrounding nuclear power plants: a descriptive and explanatory study.

description: Survey on responses to radiological emergencies. H2020 Confidence Project. Spanish sample
DOI: 10.17632/85wr6kf96p
title: Partial Nephrectomy vs Cryoablation for T1a Renal Cell Cancer
DOI: 10.17632/9b3mk35z95
title: Anamnestic anti-pZP CD4+ and CD8+ T-cell responses in PBMC from pony mares immunized with either native pZP, a recombinant zona pellucida vaccine or adjuvanted saline (controls)
DOI: 10.17632/9vgxj8bxph
title: Data for: Forest organic matter removal leads to long-term reductions in bacterial and fungal abundance

description: Data noted in the excel file is of soil bacterial and fungal abundance in a southern pine forest. The study area was a Pinus taeda (loblolly pine) forest located in eastern Texas USA (31° 06’ 32.48’’ N, 95° 09’ 59.15’’W). In brief, the experimental design consisted of two different OMR intensities (low-intensity: bole-only harvest, BO; high intensity: whole-tree harvest + forest floor removal, WT+FF) and unharvested control forest plots, with three replicates per treatment. Treatments were harvested in 1996, and replanted with containerized P. taeda seedlings at 2.5 m x 2.5 m spacing. Soil was sampled seasonally for 1 year (June 2014, September 2014, December 2014, and March 2015). At each sample date, 4 cores were taken within each replicate plot to a depth of 1 m, and separated into depth increments (0-10, 10-30, 30-60, and 60-100 cm). The four cores/plot were then pooled by depth increment and homogenized to create a single homogenous sample for each replicate plot, from which a representative subsample was removed and stored at -80 °C for molecular analyses. Microbial DNA was extracted from soil as noted in Mushinski et al. (2017). Quantitative-PCR (qPCR) targeting total bacteria and fungi was performed using primer pairs 1100F/1492R for bacteria and ITS1F/ITS5.8S for fungi . The 25 μl reaction mixture contained 13 μl SYBR green real master mix (5Prime, Gaithersburg, MD), 0.5 μl of each primer (concentration 10 mM), 1 μl DNA template, and 10 μl molecular-grade water. Each analytical run included a set of standards, negative controls, and replicated samples (n = 3) on a 96-well plate. For the 16S rRNA gene, the qPCR conditions were as follows: 95 °C for 10 min; 95 °C for 30 sec, 53 °C for 30 sec (40 cycles); 72 °C for 1 min. For the ITS region, the qPCR was run with the following conditions: 94 °C for 5 min; 94 °C for 30 sec, 57 °C for 45 sec (30 cycles); 72 °C for 1.5 min. The qPCR was performed using a Mastercycler® ep realplex thermal cycler (Eppendorf, Hamburg, Germany). Amplification efficiencies of 77-80% and 84-86% were obtained for bacteria and fungi, with r2 values &gt; 0.96. Plasmids containing 16S and ITS inserts were used for the standard curves. References Mushinski, R.M., Gentry, T.J., Dorosky, R.J., Boutton, T.W., 2017. Forest harvest intensity and soil depth alter inorganic nitrogen pool sizes and ammonia oxidizer community composition. Soil Biol. Biochem. 112, 216-227.
DOI: 10.17632/cmy66k8nf7
title: BM_onto

description: Ontology created with WebProtege. # BM-Ontology Ontology for mechanical pump failure diagnostics The BM_Ontology is a domain ontology for root cause analysis of rod sucker pump systems in the Onshore Oil production. The actual ontology is proprietary so we cannot display the entire ontology with the instances and business rules. On the other hand, we included part of the ontology that is public domain and that is also part of the actual domain ontology. Hopefully, it serves as a starting point for others to work. The sample ontology is available in OWL. We used WebProtege to build it and exported in owl.
DOI: 10.17632/rjs7kmjm2b
title: w2dynamics: Local one- and two-particle quantities from dynamical mean field theory

description: We describe the hybridization-expansion continuous-time quantum Monte Carlo code package “w2dynamics”, developed in Wien and Würzburg. We discuss the main features of this multi-orbital quantum impurity solver for the Anderson impurity model, dynamical mean field theory as well as its coupling to density functional theory. The w2dynamics package allows for calculating one- and two-particle quantities; it includes worm and further novel sampling schemes. Details about its download, installation, functioning and the relevant parameters are provided.
DOI: 10.17632/tcfwv7rm2s
title: Data for: Assessing consumer trends and illegal activity by monitoring the online wildlife trade
DOI: 10.17632/8xwncymtsy
title: Oncoplastic breast surgery, Dottorato di Ricerca, Università Tor Vergata

description: Background, surgery and perspectives of the oncoplastic breast surgery are examined and discussed .
DOI: 10.17632/bcf3p3hv7j
title: Production Data from a Dual-Porosity Gas Reservoir Simulator Implementing Pseudopressure-Based Transfer Function

description: This data is specifically generated by a dual-porosity numerical simulator for naturally fractured gas reservoirs implementing a pseudopressure-based transfer function. The data are used in Figures 1 to 7 in the paper "Analytical Dual-Porosity Gas Model for Reserve Evaluation of Naturally Fractured Gas Reservoirs Using a Density-Based Approach" by Zhang, Z. and Ayala H., L. F.
DOI: 10.17632/ddkymfk9b9
title: Data for: The timing of the Irankuh Zn-Pb deposit, Iran, from pyrite Re-Os dating and implications for metallogeny in the East Tethyan orogeny

description: They are the Re-Os isotopic data for Stage S2 pyrite in the Irankuh Zn-Pb deposit, Iran.
DOI: 10.17632/m486xvntzy
title: Data for: A triheptanoin-supplemented diet rescues hippocampal hyperexcitability and seizure susceptibility in FoxG1+/- mice

description: Full experimental procedures for the manuscript.
DOI: 10.17632/m86pm43smd
title: Impeding the single-strand annealing pathway of DNA double-strand break repair by withaferin A-mediated FANCA degradation

description: Unmodified photos related to the manuscript
DOI: 10.17632/wb3pyyrd6d
title: Data for: Exploring Touch Feedback Display of Virtual Keyboards for Reduced Eye Movements

description: eye-tracking data, typing performance data, user self-reports data
DOI: 10.17632/wk6xxcsvjb
title: Lso2 is a conserved ribosome-bound protein required for translational recovery in yeast

description: Ribosome-binding proteins function broadly in protein synthesis, gene regulation, and cellular homeostasis, but the complete complement of functional ribosome-bound proteins remains unknown. Using quantitative mass spectrometry, we identified late-annotated short open reading frame 2 (Lso2) as a ribosome-associated protein that is broadly conserved in eukaryotes. Genome-wide crosslinking and immunoprecipitation of Lso2 and its human ortholog coiled-coil domain containing 124 (CCDC124) recovered 25S ribosomal RNA in a region near the A site that overlaps the GTPase activation center. Consistent with this location, Lso2 also crosslinked to most tRNAs. Ribosome profiling of yeast lacking LSO2 (lso2Δ) revealed global translation defects during recovery from stationary phase with translation of most genes reduced more than 4-fold. Ribosomes accumulated at start codons, were depleted from stop codons, and showed codon-specific changes in occupancy in lso2Δ. These defects, and the conservation of the specific ribosome-binding activity of Lso2/CCDC124, indicate broadly important functions in translation and physiology.
DOI: 10.17632/gvwb4y65z7
title: Data for: Towards a Holocene tephrochronology for the Faroe Islands

description: Major element geochemistry of tephras from seven sites on the Faroe Islands, previously not published in full: A1: Hovsdalur, Suduroy; A2: Tjørnuvík, Streymoy; A3: Eidi bog, Eysturoy; A4: Mjáuvøtn, Streymoy; A5: Starvatn, Eysturoy; A6: Gróthusvatn, Sandoy; A7: Havnardalsmyren, Streymoy
DOI: 10.17632/9m97svyyc4
title: pCOLL4 experiment data

description: Experimental data of Plasmodium homocircumflexum experiment in Loxia curvirostra, Sturnus vulgaris, Passer domesticus and Fringilla coelebs
DOI: 10.17632/fz5dp4b64s
title: processed data for research reproduction

description: A multitude of micro- and nano-surface structures have been developed to improve the clinical performance of endosseous titanium (Ti) implants. However, most of these surface structures only simulate the topographic elements on a micro- or nano-scale. Here, we describe a novel strategy to construct a bioinspired nano-micro hierarchical TiO2 clustered nanotubular surface structure using platelet derived growth factor-BB (PDGF-BB) covalently modified Ti implants, which highly mimic the structure of collagen in bone (Figure 1). This bio-activated hierarchical surface topography is referred to as NTPCP, nanotubular surface with PDGF-BB covalent modification via PhoA (11-hydroxyundecylphosphonic acid)/CDI (carbonyldiimidazole) chemistry. It provides a 3-dimentional spatial biomimetic structure for host cells, with negligible cytotoxicity (Figure 2) and satisfactory bio-activity for significantly enhancing cell attachment and osteogenic functions (including proliferation, extracellular matrix synthesis, and mineralization) of human bone mesenchymal stem cells (bMSCs) (Figure 3-6). Remarkably, we observed burst expression of osteocalcin (OCN)(Figure 5 and 7), which mirrored prominent bone formation around the NTPCP implants in a rat model(Figure 8). Our study provides a promising strategy of surface modification to improve osseointegration of endosseous Ti implants. Considering the regulatory effects of OCN on glucose homeostasis, NTPCP may be applied in diabetic patients in the future. The surface topography of clustered TiO2 nanotubular structure on Ti surface were scanned by FE-SEM and AFM. The surface roughness and wettability of prepared Ti samples were detected by AFM and DSA system respectively. The covalent modification of PDGF-BB on clustered TiO2 nanotubular structure on Ti surface was detected by XPS and immunofluorescent staining. The cell attachment and morphology of bMSCs on prepared Ti surfaces were observed by laser confocal scanning microscope and analyzed by image semi-quantitative analyzing. The cell proliferation and cytotoxicity determination were evaluated by MTT assay. The osteogenic genes expression were detected by q-PCR. The ECM mineralization were inspected by mineralized nodule staining and collegen staining. The in vivo study was performed by in vivo implantation model in rats. The OCN expression around Ti implants was observed by OCN immunofluorescent staining, The bone formation around Ti implants was analyzed by VG staining and image semi-quantitative analyzing.
DOI: 10.17632/nh52wzvvnn
title: Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions

description: Data used to construct Fig 3b in Nature Comms 2017 doi: 10.1038/s41467-017-01962-x, PMID: 29170434. ========================= Filenames: XYZ_early_embryo.mat,XYZ_late_embryo.mat, XYZ_S2.mat Matlab files contain the XYZ foci position for each cell in the three analysed cell types (186, 195 and 196 cells for early embryo, late embryo and S2 cells, respectively). The XYZ positions are in nanometers. Datasets Figure 1 in Cattoni, et al. Nature Comms 2017 doi: 10.1038/s41467-017-01962-x, PMID: 29170434. ============== Datasets for these figure are provided in the files: All_libraries_S2_16_11_2017.mat All_libraries_early_16_11_2017.mat All_libraries_late_embryo_16_11_2017.mat To retrieve the distance distributions, - load dataset in matlab - the structure 'Alllibraries' contains all data. - to retrieve pairwise distances (in nm) between libraries 2 and 3, do &gt;&gt; Alllibraries{2,3}.distances The different library combinations in the dataset are described in the file: All_libraries_content.csv have fun!
DOI: 10.17632/rm53fh7nwp
title: #VagaGeneral21F #JoNoFaigVaga21F 2019.02.20 - 2019.02.22

description: Dataset that collects tweets between February 20th and February 22th in 2019 with Twarc. Twarc is a tool by Documenting the Now: http://www.docnow.io/#tools #VagaGeneral21F and #JoNoFaigVaga21F were hashtags used for the General Strike in Catalonia convocated on February 21th in 2019. Vaga general catalana de febrer de 2019 - Viquipèdia, l'enciclopèdia lliure https://ca.wikipedia.org/wiki/Vaga_general_catalana_de_febrer_de_2019 Hashtags: #VagaGeneral21F #JoNoFaigVaga21F Dates: 2019.02.20-2019.02.22 Number of Tweets: 137,862 Size (Hydrated): 942 megabytes
DOI: 10.17632/7r8rn35mnd
title: Data for "Vulnerability-based Comparisons of Different Operation Models for Integrated Power and Gas Systems"

description: Data for "Vulnerability-based Comparisons of Different Operation Models for Integrated Power and Gas Systems"
DOI: 10.17632/8z43hjxs77
title: Organ Based Differential Regulation of Metabolic Pathways by Dexamethasone: A Proteomic Approach

description: This is a supplimintary data for a proteomics study of Dex-treated Rats
DOI: 10.17632/rj9t9vt3ky
title: Data for: Cleaner Distribution of Electricity Energy Considering Personnel's Attitudes toward Waste Generation

description: detailed information about AEPDC electrical network and customers Questionnaires Tentative factor list
DOI: 10.17632/z9rkytkrwn
title: Data for: Structure-based design and synthesis of pyrimidine-4,6-diamine derivatives as Janus kinase 3 inhibitors
DOI: 10.17632/5zp4tfy64g
title: Data for: A Survey of Patient Perceptions and Preferences for Glaucoma Treatment with Intravitreal Injections

description: Study Title:A Survey of Patient Perceptions and Preferences for Glaucoma Treatment with Intravitreal Injections File includes - Raw Data
DOI: 10.17632/9r8cx4gdfs
title: Prova

description: ...
DOI: 10.17632/ndy7tcjtz9
title: Data for: Geochronological and geochemical studies on the granitoid gneisses in the northeastern North China Craton: Insights into the Late Neoarchean magmatism and crustal evolution

description: Supplementary Tables
DOI: 10.17632/sb9gcn57j3
title: Kinetic rate constants for amino acids decomposition in water

description: Published kinetics rate constants (in 1/s) for the decomposition of amino acids in water at different temperature (K).
DOI: 10.17632/3pbybbkt2w
title: Data for: GABA mediated reduction of arsenite toxicity in rice seedling through modulation of fatty acids, stress responsive amino acids and polyamines biosynthesis
DOI: 10.17632/ksjfk46x8n
title: Skin innate immunity of diskless-fingered odorous frogs (Odorrana grahami) with spatial-temporal variations

description: Data for SPSS and results by SPSS
DOI: 10.17632/v4h34gpmjj
title: Data for: Calculated meteoroid production of hydroxyl in the atmosphere of Jupiter

description: These files list the neutral and ion reactions used for the calculations. They have the form: X: R1 + R2 -&gt; P1 + P2 rate (as a Fortran statement) ; source where X = P, C or 0,I,F for photodissociation, chemical reaction or 3-body reaction
DOI: 10.17632/wwt485jjhh
title: Data for: Effect of sedimentary environment on the formation of organic-rich marine shale: Insights from major/trace elements and shale composition

description: All of the data used in this manuscript are listed in this excel file.
DOI: 10.17632/bfr6pj8cyf
title: Pan Genomic Analysis of pseudomonas stutzeri 49 strains

description: File names are self explanatory. The data set was created by PGAP Refer the manual and the paper 10.1093/bioinformatics/btr655 https://sourceforge.net/projects/pgap/
DOI: 10.17632/dcfwnsp6m5
title: Co-deposition, JET-ILW: NRA, spatial blocks ILW-1, 90 degree side

description: NRA data from spatial blocks 4, 5, 6 (ILW-1), side facing 90 degrees from plasma. Data provided as list-files (.lst) and histogram files (.mpa) from FAST MPA-3 data acquisition system. Calibration files from AlO flourescent screen and W included. Beam: 2.8 MeV He-3.
DOI: 10.17632/gcy7f4kj76
title: p73 is Required for Ovarian Follicle Development and Regulates a Gene Network Involved in Granulosa-to-Granulosa Cell Adhesion. Santos et al

description: The role of p73 in murine ovarian follicle development and function. Data includes p73+/+ and p73-/- ovarian tissue sections stained with H&E that were used for follicle quantification. Carmine stained whole mount mammary gland images from p73+/+ and p73-/- female mice used for mammary gland branching quantification. Raw cell migration images per cell line analyzed.
DOI: 10.17632/r4cmrs88hx
title: Data for: Nitric oxide contributes to protein homeostasis by S-nitrosylations of the chaperone HSPA8 and the ubiquitin ligase UBE2D

description: DIB1: We generated nNOS+ SH-SY5Y cells that express nNOS at a level comparable to mouse brain, replicating the aging phenotype. nNOS+ and MOCK cells were exposed to proteostasis stress by treatment with rapamycin or serum-free starvation versus control. To analyze NO-mediated S-nitrosylations (SNO) and other reversible protein modifications including disulfides and sulfoxides we used complimentary proteomic approaches encompassing 2D-SNO-DIGE (differential gel electrophoresis), SNO-site identification (SNOSID), SNO Super-SILAC, SNO BIAM-Switch and Redox-BIAM switch. The redox proteomes were analyzed using hybrid liquid chromatography/mass spectrometry (LC/MS) on an LTQ Orbitrap XL (2D-SNO-DIGE, SNOSID, SNO-SILAC) or on a Thermo Scientific™ Q Exactive Plus (BIAM switch assays), the latter equipped with an ultra-high performance liquid chromatography unit and a Nanospray Flex Ion-Source. Full scan MS-data were acquired using Xcalibur, and raw mass spectra were analyzed using the proteomics software MaxQuant. The data are MaxQuant output files (Table 1 2D-SNO-DIGE, Table 2 SNOSID, Table 3 SNO-SILAC, Table 4 GO of SNO modified proteins, Table 5 SNO-BIAM switch, Table 6 Redox BIAM switch) providing essential information including peptide and protein identification, accession numbers, protein and gene names, sequence coverage and quantification values of each sample. Identifications from the reverse decoy database, identified by site only and known contaminants were excluded. The Excel file also contains Gene Ontology terms associated with the SNOed proteins (Table 4 and specified columns in Table 5 and 6). The GO overrepresentation analysis (Table 4) was performed with the Panther GO overrepresentation tool (http://www.pantherdb.org/). Excel Table 1: 2D-SNO DIGE Excel Table 2: SNOSID Excel Table 3: SNO-SILAC Excel Table 4: Gene ontology of redox modified proteins (pooled hits of 2D-DIGE, SNOSID and SNO-SILAC) Excel Table 5: SNO-BIAM switch Excel Table 6: Redox-BIAM switch DIB2 The data are MaxQuant output files (Table 1 SILAC, Table 3 LFQ proteome) of the Full Proteome including peptide and protein identification, accession numbers, protein and gene names, sequence coverage and SILAC or label free quantification (LFQ) values of each sample. Identifications from the reverse decoy database, identified by site only and known contaminants were excluded. The raw MS proteomics data of the Full Proteome have been deposited to the ProteomeXchange Consortium via the PRIDE [1] partner repository with the dataset identifier PXD010538. Reviewer account details: Username: reviewer95719@ebi.ac.uk; Password: UR0ZlqWo. Excel Table 1: MaxQuant data of normalized SILAC proteome (vehicle versus 6h rapamycin) Excel Table 2: Gene Ontology analysis of significantly regulated proteins (SILAC experiment) Excel Table 3: MaxQuant data of label-free deep proteome (conditions: full medium, 24h serum-free, 24h rapamycin)
DOI: 10.17632/7rk44m5tt7
title: Data for: An Investigation on fabrication, micro structure, and mechanical properties of AlMg6-CNT composite production by accumulative roll bonding

description: In this paper, an experimental test data and the calculations of models, used in this paper, are presented.
DOI: 10.17632/dw4bymw84t
title: Data for: Hospitalization affects the anticoagulation patterns of patients with known AF

description: Dataset and syntax code to reproduce results of Manuscript Hospitalization affects the anticoagulation patterns of patients with known AF
DOI: 10.17632/w5fwx87dtk
title: Data for: Characterization of biodegradable/non-compostable films made from cellulose acetate/corn starch blends processed under reactive extrusion conditions

description: These files provide the transparent date of this article.
DOI: 10.17632/4mgh7hc7n4
title: Data for: 3298506

description: ZIP code by ZIP code data modeling effects of the $10,000 SALT deduction limitation.
DOI: 10.17632/97b8yfpbv9
title: Study of the influence of the degree of superheating on the performance of a R134a condenser by means of experimental and numerical studies

description: The data contains two different folders, one is related with the measure experimental data. The other is related with the numerical model employed to study both the experimental setup and the condenser. Experimental data folder: raw measure data and the C++ routine employed to process the data has been included. Short explanation of the program use may be found in main.cpp. Numerical data folder: the C++ program used to calculate the results shown in the paper has been included. Short explanation of the program use may be found in main.cpp.
DOI: 10.17632/jrwx2z25bj
title: Data for: Rheological and mucoadhesive properties of polysaccharide from Bletilla striata with potential use in pharmaceutics as bioadhesive excipient

description: inititial data for viscostiy and bioadensive properties of BSP
DOI: 10.17632/mcj4j3rdx9
title: easyGSA - framework for efficient global sensitivity analysis using surrogate models

description: Workflows for meta-modeling based sensitivity analysis, shared under the toolbox named easyGSA.
DOI: 10.17632/wkhtxtzddb
title: Data for: The effect of overburden thickness on deformation mechanism in Keping fold-thrust belt, southwestern Chinese Tian Shan: Insights from analogue modeling

description: Figures and tables.
DOI: 10.17632/zk225jy4kh
title: Sustained Postnatal Skin Regeneration Following In Utero Closure of Skin Defects Using Functionalized Collagen Scaffolds

description: Defect = untreated COLVF = COL-HEP/GF COL = COL 9 206 A DEFECT EPI 10 206 A DEFECT DER 11 207 A DEFECT EPI 12 207 A DEFECT DER 13 211 A DEFECT EPI 14 211 A DEFECT DER 15 211 B DEFECT EPI 16 211 B DEFECT DER 17 206 A COL EPI 18 206 A COL DER 19 207 A COL EPI 20 207 A COL DER 21 211 A COL EPI 22 211 A COL DER 23 211 B COL EPI 24 211 B COL DER 25 206 A COL/GF EPI 26 206 A COL/GF DER 27 207 A COL/GF EPI 28 207 A COL/GF DER 29 211 A COL/GF EPI 30 211 A COL/GF DER 31 211 B COL/GF EPI 32 211 B COL/GF DER
DOI: 10.17632/273b2wkvjc
title: Data for: 3360696

description: We investigate the effects of neural network regularization techniques. First, we reason formally through the effect of dropout and training stochasticity on gradient descent. Then, we conduct classification experiments on the ImageNet data set, as well as regression experiments in the OneNow Reinforcement Learning data set. A network layer's weight matrix is quantified via Singular Value Decomposition and Conditioning ratios. Our regression network appeared to be well conditioned. However, we find that learning for large-scale classification applications is likely to be capped by poor conditioning. We propose approaches that may prove breakthroughs in learning, providing early evidence. We introduce a gradient perturbation layer, a method to maximize generalization experimentally. Our numerical analysis showcases the opportunity to introduce network circuitry compression, relying on the principal components of a layer's weights, when conditioning peaks. Generally, we propose conditioning as an objective function constraint.