cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11688321.v1
title: Supplementary Material for: Efficacy of Long-Term Feeding of α-Glycerophosphocholine for Aging-Related Phenomena in Old Mice

description: α-Glycerophosphocholine (GPC) is a natural source of choline. It reportedly prevents aging-related decline in cognitive function, but the underlying mechanism remains unclear. Although it is understood that aging influences taste sensitivity and energy regulation, whether GPC exerts antiaging effects on such phenomena requires further elucidation. Here, we used old C57BL/6J mice that were fed a GPC-containing diet, to investigate the molecular mechanisms underlying the prevention of a decline in cognitive function associated with aging and examine the beneficial effects of GPC intake on aging-related phenomena, such as taste sensitivity and energy regulation. We confirmed that GPC intake reduces the aging-related decline in the expression levels of genes related to long-term potentiation. Although we did not observe an improvement in aging-related decline in taste sensitivity, there was a notable improvement in the expression levels of β-oxidation-associated genes in old mice. Our results suggest that the prevention of aging-related decline in cognitive function by GPC intake may be associated with the improvement of gene expression levels of long-term potentiation. Furthermore, GPC intake may positively influence lipid metabolism.
DOI: 10.6084/m9.figshare.11844258.v2
title: Raw ring width data

description: Chronologies of black,red and white spruce ring widths. These chronologies were obtained from cores sampled from live trees. 20 trees were sampled from 83 stands in southern Quebec.
DOI: 10.6084/m9.figshare.16688791.v1
title: Supplementary Material – Chemical profile of Stachytarpheta schottiana by LC-HRMS/MS dereplication and molecular networking

description: <b>Supplemental File 1 – </b>NMR elucidation tables of compounds 9 and 13; Structures of the compounds suggested by dereplication, molecular networking, and NMR elucidation; Molecular networkings of the <i>Stachytarpheta schottiana </i>polar extract in negative mode.
DOI: 10.6084/m9.figshare.21876159.v1
title: Supplementary materials for the manuscript "Association of HLA-class II alleles with risk of relapse in myeloperoxidase-antineutrophil cytoplasmic antibody positive vasculitis in the Japanese population"

description: Supplementary Table S1. Association analysis of each <em>HLA-DRB1</em> allele with occurrence of relapse and time to relapse. <br> Supplementary Table S2. Association analysis of each <em>HLA-DQA1</em> allele with occurrence of relapse and time to relapse. <br> Supplementary Table S3. Association analysis of each <em>HLA-DQB1</em> allele with occurrence of relapse and time to relapse. <br> Supplementary Table S4. Association analysis of each <em>HLA-DPB1</em> allele with occurrence of relapse and time to relapse. <br> Supplementary Data 1. Clinical information and HLA genotypes in each subject examined for susceptibility and relapse. <br> Susceptibility Data 2. Association of each HLA -class II amino acid with relapse-free survival. <br>
DOI: 10.6084/m9.figshare.25592478.v1
title: Supplementary Materials for Large Case Studies

description: Key Parameters of Equipment in PDNs, UDNs and UTNs
DOI: 10.6084/m9.figshare.28642406.v1
title: Matbench Discovery - Model Predictions for Geometry Optimization

description: This dataset contains model predictions from various models evaluated on the
 Matbench Discovery benchmark for the geometry optimization task.

 Task description: Relaxing atomic positions to minimize the energy

 For more information about the benchmark and models, visit:
 https://github.com/janosh/matbench-discovery.
DOI: 10.6084/m9.figshare.7739084.v2
title: Dataset: Books

description: The books dataset includes information about all published books from Springer Nature.<br>See also: https://scigraph.springernature.com/explorer/datasets/data_at_a_glance/<br>A book record usually includes information about the chapters it contains, external identifiers, authors, editors and affiliations information, links to related grants, subjects and abstract when available.<br>Version info:* http://scigraph.downloads.uberresearch.com/archives/current/TIMESTAMP.txt* http://scigraph.downloads.uberresearch.com/archives/current/LICENSE.txt
DOI: 10.6084/m9.figshare.25927144.v1
title: H17_Wh

description: Energy related data for House 17
DOI: 10.6084/m9.figshare.7899866.v1
title: Structural heart disease as the cause of syncope

description: We described the clinical evolution of patients with structural heart disease presenting at the emergency room with syncope. Patients were stratified according to their syncope etiology and available scores for syncope prognostication. Cox proportional hazard models were used to investigate the relationship between etiology of the syncope and event-free survival. Of the 82,678 emergency visits during the study period, 160 (0.16%) patients were there due to syncope, having a previous diagnosis of structural heart disease. During the median follow-up of 33.8±13.8 months, mean age at the qualifying syncope event was 68.3 years and 40.6% of patients were male. Syncope was vasovagal in 32%, cardiogenic in 57%, orthostatic hypotension in 6%, and of unknown causes in 5% of patients. The primary composite endpoint death, readmission, and emergency visit in 30 days was 39.4% in vasovagal syncope and 60.6% cardiogenic syncope (P&lt;0.001). Primary endpoint-free survival was lower for patients with cardiogenic syncope (HR=2.97, 95%CI=1.94-4.55; P&lt;0.001). The scores were analyzed for diagnostic performance with area under the curve (AUC) and did not help differentiate patients with an increased risk of adverse events. The differential diagnosis of syncope causes in patients with structural heart disease is important, because vasovagal and postural hypotension have better survival and less probability of emergency room or hospital readmission. The available scores are not reliable tools for prognosis in this specific patient population.
DOI: 10.6084/m9.figshare.7960781.v1
title: Data for paper - Valsartan impedes epinephrine-induced ICAM-4 activation on normal, sickle cell trait and sickle cell disease red blood cells

description: Effect of valsartan on the ICAM-4 activation on human red blood cells.
DOI: 10.6084/m9.figshare.1524898.v1
title: Schinus terebinthifolius

description: Pollen from Brazilian Savannah, Mato Grosso do Sul state. They are used to training and test a software based in computer vison and learning machine.
DOI: 10.6084/m9.figshare.13514170.v1
title: Proposition of PhD topics from T. J.-Y. Derrien

description: I list here PhD topics I could propose to undertake in near future. <br>
DOI: 10.6084/m9.figshare.14644608.v4
title: Bacteria to birds

description: Raw data associated with:<br>Ángel Gálvez, Pedro R. Peres-Neto, Andreu Castillo-Escrivà, Fabián Bonilla, Antonio Camacho, Eduardo M. García-Roger, Sanda Iepure, Javier Miralles, Juan S. Monrós, Carla Olmo, Antonio Picazo, Carmen Rojo, Juan Rueda, María Sahuquillo, Mahmood Sasa, Mati Segura, Xavier Armengol & Francesc Mesquita-Joanes. Under review. Metacommunities from bacteria to birds: stronger environmental selection in Mediterranean than in tropical ponds:<br>Data containing:<br>Geographical coordinates and environmental variables of tropical and mediterranean ponds<br>Species matrices of phytoplankton, rotifers, microcrustaceans, macroinvertebrates, amphibians and birds from tropical and mediterranean ponds<br>ZOTUs matrices of bacteria of the water column, bacteria of the sediment, archaea of the water column and archaea ofthe sediment from tropical and mediterranean ponds.<br><br><br>
DOI: 10.6084/m9.figshare.20502426.v1
title: MOSTA_3_stages

description: anndata object based on data reported in [1] as provided in MOSTA. The anndata object include embryo sections <code>E9.5 E2S1</code>, <code>E10.5 E2S1</code>. The <code>.X</code> entry is based on reprocessing of the <code>counts</code> data consisting of <code>normalize_total</code> and <code>log1p</code>. <code>mouse_embryo_early.h5ad</code> being uploaded to here, for documentation: anndata object based on data reported in [1] as provided in MOSTA. The anndata object include embryo sections <code>E9.5 E2S1</code>, <code>E10.5 E2S1, </code>E11.5 E1S2. 2000 most highly variable genes were selected. <br> [1] Ao Chen, Sha Liao, Mengnan Cheng, Kailong Ma, Liang Wu, Yiwei Lai, Xiaojie Qiu et al. "Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays." Cell (2022)
DOI: 10.6084/m9.figshare.13415186.v1
title: Data file ELES-SCS-BPFSC.sav

description: Sample of portuguese adolescents, collected in 2019. This dataset includes the following variables: sociodemographic, experiences of threat and subordination in childhood, self-compassion and borderline features. Ethical standards were attended and this study was approved by competente authorities.Descriptive statistics, correlations, regression analysis and a mediation model were conducted.
DOI: 10.6084/m9.figshare.25713636.v1
title: Python codes for ML-Pain-MEDD

description: An exploratory analysis of multiple machine learning models for predicting end-of-treatment acute pain intensity and opioid doses (represented as the total morphine equivalent daily dose (MEDD)) and analgesic efficacy in a large scare retrospective cohort of oral cavity and oropharyngeal cancer patients received radiation therapy (RT).
DOI: 10.6084/m9.figshare.26065600.v1
title: Semi-orthogonal subspaces for value mediate a binding and generalization tradeoff

description: This is the raw data underlying Johnston and Fine et al. (2023) https://doi.org/10.48550/arXiv.2309.07766It includes recordings from five brain regions in Rhesus macaques performing a risky gambling task. The details of the task and the recordings are given in the above paper. There is some information about the data format included in this repository. For more information, please reference the associated code repository: https://github.com/wj2/subspace_binding
DOI: 10.6084/m9.figshare.1600993.v1
title: Data Management Practices of Health Sciences Researchers

description: This study was approved and granted exempt status from the University’s Institutional Review Board (IRB). Librarians at the University of Pittsburgh Health Sciences Library System conducted a 25-question online survey of the data management practices of researchers within the six schools of the health sciences (School of Medicine, School of Health and Rehabilitation Sciences, Graduate School of Public Health, School of Nursing, School of Pharmacy, and School of Dental Medicine). The survey was administered via SurveyMonkey. Questions included researchers’ demographics and data management practices such as the use of file naming conventions, assignment of metadata to data files, storage of working and back-up data, data accessibility, and the use of data management plans (survey instrument provided). All multiple choice questions required a response and the majority were “check all that apply.” Participants were recruited between June 4 and June 21, 2013. A non-targeted message requesting confidential participation in a research study to collect information on research data management practices was distributed to multiple health sciences listservs in the university and posted on the library’s home page and Molecular Biology blog. A reminder was sent once during the 17-day survey period. No incentives were offered. Text provided as the “other” answer in multiple choice and open-ended questions was categorized independently by the three authors, who reached agreement on any discrepancies for final coding. <br>
DOI: 10.6084/m9.figshare.28632236.v1
title: PD-1 抑制剂联合化疗作为晚期 HER2 阴性胃癌一线治疗的疗效和安全性：系统评价和荟萃分析

description: 引言 本荟萃分析旨在比较一线 PD-1 抑制剂联合化疗与化疗对晚期 HER2 阴性胃癌 （GC） 患者的疗效和安全性。材料和方法 检索了四个数据库 （PubMed、Embase、Web of Science 和 Cochrane 图书馆） 以查找随机对照试验 （RCT），这些试验比较了晚期 HER2 阴性 GC 患者的一线 PD-1 抑制剂联合化疗与化疗。检索从数据库建立到 2025 年 3 月 10 日进行。对总生存期 （OS） 、无进展生存期 （PFS） 、客观缓解率 （ORR） 、治疗相关不良事件 （TRAE） 和 3 级 ≥TRAEs 进行荟萃分析。结果 Meta 分析纳入 6 例 RCT。荟萃分析包括一组 6038 例诊断为未经治疗的晚期 HER2 阴性 GC 患者。在该队列中，3026 例患者接受一线 PD-1 抑制剂联合化疗，而 3012 例患者仅接受一线化疗。与化疗相比，一线 PD-1 抑制剂联合化疗产生更好的 OS （HR= 0.91;95% CI 0.89 至 0.93;P&lt;0.01）、PFS （HR= 0.89,95%CI 0.86 至 0.91 P&lt;0.01） 和 ORR （RR= 1.22,95% CI，1.16 至 1.29，P&lt;0.01）。使用 IPDformKM 程序重建 OS 和 PFS 的 Kaplan-Meier 曲线提供了清晰易懂的肿瘤学结果表示。一线PD-1抑制剂联合化疗在OS（中位生存时间：12.27个月 vs 14.11个月，HR=0.80,95%CI 0.75至0.84，P&lt;0.01）和PFS（中位生存时间：7.27个月 vs 6.59个月，HR=0.75,95%CI 0.71至0.80，P&lt;0.01）方面比化疗更有效。在安全性方面，与化疗相比，一线 PD-1 抑制剂联合化疗表现出更大的发生 TRAEs （RR=1.02,95% CI： 1.00 至 1.04，P=0.03） 和 ≥3 级 TRAEs （RR=1.16,95% Cl： 1.08 至 1.25，P&lt;0.01）。
DOI: 10.6084/m9.figshare.3544379.v1
title: Appendix A. Formulas and examples for the construction of tail-up and tail-down covariance matrices.

description: Formulas and examples for the construction of tail-up and tail-down covariance matrices.
DOI: 10.6084/m9.figshare.21282480.v1
title: Raw data - Analysis of differential metabolites and metabolic pathways in adipose tissue of tree shrews (Tupaia belangeri) under gradient cooling acclimation

description: <strong>The raw data of the article “Analysis of differential metabolites and metabolic pathways in adipose tissue of tree shrews (</strong><em><strong>Tupaia belangeri</strong></em><strong>) under gradient cooling acclimation”.</strong>
DOI: 10.6084/m9.figshare.25731573.v1
title: <b>A curated dataset on the distribution of West Palaearctic freshwater bivalves</b>

description: Freshwater bivalves (FWB) are attracting scientific and societal attention given their essential ecosystem services and ecological functions, and poor conservation status. Current knowledge of the spatial distribution of West Palearctic FWB is poor, preventing the understanding of biogeography and conservation planning. One of the priorities of the pan-European networking project “CONFREMU - Conservation of freshwater mussels: a pan-European approach” funded by the European Union, was to fill the knowledge gap on the distribution of FWB in Europe and adjacent regions. Based on the efforts of this network of scientists, we provide the most complete, taxonomically, and geographically accurate distribution of FWB species for the entire West Palearctic. The dataset contains 270,287 geo-referenced records of 93 native and 8 non-native FWB species covering five centuries (1674-2023). The dataset compiles information from private records from 82 specialists and multiple sources (e.g., published articles, grey literature, biodiversity databases, and scientific collections. This dataset will be available as an online resource representing an important data source for future studies on the biodiversity, biogeography, and conservation of these important organisms.
DOI: 10.6084/m9.figshare.25856188.v4
title: Supplementary Material for: Ruthenium-106 plaque brachytherapy for circumscribed choroidal hemangioma: A case series and review of literature.

description: Introduction: We aim to report the anatomical and functional outcomes of ruthenium-106 brachytherapy in management of circumscribed choroidal hemangiomas (CCH).
Methods: This is a single-center retrospective case series including patients with unilateral symptomatic CCH treated with ruthenium-106 brachytherapy at Cairo University ocular oncology service. Patients’ records were analyzed for patients’ demographics, best corrected visual acuity (BCVA), tumor dimensions (thickness and largest base diameter), foveal subretinal fluid, radiation-related complications, and recurrence.
Results: Seven patients were included in the study (including 6 males) with mean age 39.3±15.4 years; ruthenium-106 plaque was used to deliver 50 Gray to tumor apex. After a mean follow-up duration of 12.5 months, all patients had significant improvement in BCVA after treatment, mean tumor height decreased significantly from 4.76 ±1.76 mm to 1.70±1.2 mm (p-value 0.01). Largest tumor base diameter also decreased significantly from 9.13±2.68 mm to 4.65±3.75 mm (p-value 0.05). Subretinal fluid and exudative retinal detachment resolved in all patients and no significant radiation-related complications were observed in any patient. None of the patients needed any further treatment or experienced recurrence within the follow-up period.
Conclusion: Ruthenium-106 brachytherapy is an effective tool in the management of symptomatic CCH with a good visual prognosis and safety profile.
DOI: 10.6084/m9.figshare.26317678.v4
title: Dataset and scripts to perform phylogenetic reconstruction and climate modelling on the evolution and spatial distribution of melanism in vipers

description: In this work we investigate the evolutionary significance of melanism in Viperidae, under an ecological perspective by accounting for the thermal advantages provided by melanism to thermoregulation efficiency, thus testing for the effect of climate on the spatial distribution of this phenotypic trait.
DOI: 10.6084/m9.figshare.6818810.v1
title: Input and Output Files

description: Input and Output files can be downloaded from here<br>
DOI: 10.6084/m9.figshare.14761272.v1
title: Supplementary Material for: A simple prognostic scoring system for hepatocellular carcinoma treated with selective internal radiation therapy

description: Medicine
DOI: 10.6084/m9.figshare.20268051.v1
title: Supplementary Material for: Survival and Survival without Major Morbidity Seem to Be Consistently Better throughout Gestational Age in 24- to 30-Week Gestational Age Very-Low-Birth-Weight Female Infants Compared to Males

description: <b><i>Introduction:</i></b> Several studies showed advantages in outcomes for very-low-birth-weight (VLBW) female infants. It has been suggested that recent advances in perinatal care might have benefited boys relatively more than girls, making differences disappear. <b><i>Objectives:</i></b> The aims of the study were (1) to determine if sex differences in survival and survival without morbidity in VLBW infants are still present in the context of more advanced perinatal care and (2) to know whether these differences are consistent throughout gestational age (GA). <b><i>Methods:</i></b> Retrospective cohort study in seven countries participating in the Spanish SEN1500 and the South American NEOCOSUR neonatal networks. We included VLBW infants 24–30 weeks’ GA, born alive without major congenital anomalies (2013–2016). Major morbidity, survival, and survival without morbidity were compared between male and female infants overall and stratified by GA. <b><i>Results:</i></b> 10,565 patients were included: 5,620 (53.2%) males and 4,945 (46.8%) females. Female infants exhibited a lower incidence rate ratio (95% CI) of respiratory distress syndrome: 0.91 (0.88, 0.94), necrotizing enterocolitis: 0.83 (0.74, 0.93), major brain damage: 0.79 (0.72, 0.86), moderate-severe bronchopulmonary dysplasia (BPD): 0.77 (0.72, 0.83), higher survival: 1.03 (1.01, 1.05), survival without BPD: 1.11 (1.07, 1.16), survival without major brain damage: 1.05 (1.02, 1.08), and survival without major morbidity: 1.14 (1.07, 1.21). Survival and survival without morbidity were almost consistently favourable to females throughout GA. <b><i>Conclusions:</i></b> Our findings suggest that perinatal results continue to be favourable for VLBW female infants in the context of current perinatology, and that they are almost consistent throughout GA.
DOI: 10.6084/m9.figshare.20356387.v1
title: Additional file 2 of A novel splice site variant c.1183 + 1 G &gt; C in DFNA5 causing autosomal dominant nonsyndromic hearing loss in a Chinese family

description: Additional file 2. Supplementary table 2. The list of 3255 variants in Raw Data.
DOI: 10.6084/m9.figshare.22943474.v1
title: Shark data for Ryburn et al., 2025

description: Data used in the analysis for:Ryburn Savannah J., Tammy Yu, Kelly Jia-Wei Ong, Eldridge Wisely, Meggan A. Alston, Ella Howie, Peyton LeRoy, Sarah Elizabeth Giang, William Ball, Jewel Benton, Robert Calhoun, Isabella Favreau, Ana Gutierrez, Kayla Hallac, Dakota Hanson, Teagan Hibbard, Bryson Loflin, Joshua Lopez, Gracie Mock, Kailey Myers, Andrés Pinos-Sánchez, Alejandra Maria Suarez Garcia, Adriana Retamales Romero, Audrey Thomas, Rhiannon Williams, Anabel Zaldivar, John Francis Bruno. Sale of critically endangered sharks in the United States
DOI: 10.6084/m9.figshare.25874371.v1
title: EH23a.tar.gz

description: Genome assembly and annotation
DOI: 10.6084/m9.figshare.10321706.v1
title: SVALCAM auroral data

description: Auroral intensity data from SVALCAM
DOI: 10.6084/m9.figshare.20129684.v1
title: Supplementary Material for: Utilization of Cystatin C in the Outpatient Setting

description: <b><i>Introduction:</i></b> Serum creatinine is the traditional biomarker for estimating glomerular filtration rate (eGFR). Cystatin C is an alternative biomarker for which estimating equations exist. The use of cystatin C testing, and the interrelationships among the recently revised Chronic Kidney Disease Epidemiology (CKD-EPI) 2021 estimating equations, was evaluated in a national outpatient laboratory dataset. <b><i>Methods:</i></b> Cystatin C results reported on adults between November 2011 and June 2018 by Laboratory Corporation of America Holdings were examined, with classification of ordering providers and diagnostic codes. Updated eGFR results were calculated using the CKD-EPI 2021 equations for each sample with both cystatin C and creatinine values available. The Spearman correlation coefficients were calculated. Reclassification at clinically relevant cut-off values was examined. <b><i>Results:</i></b> There were 87,803 serum cystatin C levels among 55,360 patients; mean age 58 ± 17 years; 50% women. Cystatin C usage increased over time and was ordered for many indications. Among 73,367 samples with simultaneous creatinine and cystatin C, <i>r</i> = 0.84 between eGFR-creatinine and eGFR-cystatin. Correlations of eGFR-creatinine, eGFR-cystatin, and the averaged result of the two equations to the new combined equation were <i>r</i> = 0.94, <i>r</i> = 0.97, and <i>r</i> = 0.998, respectively (<i>p</i> &lt; 0.001 for all). Use of combined/averaged equations tended to result in a higher eGFR and upclassification, compared to eGFR-creatinine. <b><i>Conclusion/Discussion:</i></b> Use of Cystatin C is increasing and has moved beyond the nephrology community and the original indications from the 2012 KDIGO guidelines. Community utilization of cystatin C measurement is likely to expand, and understanding of the relationships between estimating equations will help clinicians optimize their use in the outpatient setting.
DOI: 10.6084/m9.figshare.25801564.v1
title: Dataset utilized in the academic research on the relationship between "Lying Flat" tendency and mental health

description: "Lying Flat" has become a new youth subculture phenomenon. We investigated the relationship between "Lying Flat" tendency and mental health using the cross-sectional (Study 1a) and longitudinal designs (Study 1b) as well as the intervention design (Study 2). Here we public the original data regarding this research to facilitate further academic exploration.
DOI: 10.6084/m9.figshare.7507877.v1
title: Different languages, different voices: evidence from Portuguese/English bilinguals' speech

description: Abstract Voice quality results from the modulation of vocal tract articulators and laryngeal activity and produces a long-term effect in speech production and perception. Bilingual speakers can alter voice quality when speaking different languages, according to evidence shown in research in the field. The present study shows results from a voice production experiment in Brazilian Portuguese (BP) and English (EN) by Brazilian bilingual speakers. The experiment consisted of the recordings of reading and semi-spontaneous tasks in BP and EN. Results show statistically significant differences between languages in f0 measures, as well as in spectral characteristics (LTAS) between languages and tasks.