cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/47b050fe-bf78-4aed-b7a4-38d06d3ddb9a
title: Microscopy, image analysis and computational data underlying the publication "A non-canonical role for Jagged1 in endothelial mechanotransduction"

description: The Notch signaling pathway plays a crucial role in regulating endothelial biology. Notch signaling is sensitive to hemodynamic forces and governs mechanically-driven cardiovascular development, physiology, and remodeling. However, mechanisms integrating mechanical forces with the Notch pathway remain largely unknown. Here, we uncover a non-canonical role for the Notch ligand Jagged1 as a mechanotransducer in endothelial cells. Jagged1 undergoes polarization in response to laminar shear stress and exhibits an unimodal expression pattern, peaking at a shear stress magnitude of 0.8-1 Pa. Jagged1 regulates endothelial mechanotransduction via the VEGFR2/ERK pathway. Deletion of Jagged1 results in reduced shear stress-induced kinase activity in vitro and diminished kinase activity in zebrafish embryos, without affecting canonical Notch signaling. Furthermore, direct physical activation of Jagged1 using antibody-conjugated beads triggers VEGFR2/ERK2 signaling, mediated by Jagged1-Src interaction and Src activation. These findings highlight a novel, non-canonical function of Jagged1 as a mechanotransducer in endothelial cells.<br>This dataset contains microscopy and image analysis data from in vivo and in vitro experiments related to Jagged1 in the endothelial response to hemodynamic stress. It also includes computer fluid dynamics simulations of an orbital shaker system to induce controlled shear stress magnitude and flow pattern.
DOI: 10.5061/dryad.b88c7
title: Data from: Investigating the association between social interactions and personality states dynamics

description: The recent personality psychology literature has coined the name of
 personality states to refer to states having the same behavioural,
 affective and cognitive content (described by adjectives) as the
 corresponding trait, but for a shorter duration. The variability in
 personality states may be the reaction to specific characteristics of
 situations. The aim of our study is to investigate whether specific
 situational factors, that is, different configurations of face-to-face
 interactions, are predictors of variability of personality states in a
 work environment. The obtained results provide evidence that within-person
 variability in personality is associated with variation in face-to-face
 interactions. Interestingly, the effects differ by type and level of the
 personality states: adaptation effects for Agreeableness and Emotional
 Stability, whereby the personality states of an individual trigger similar
 states in other people interacting with them and complementarity effects
 for Openness to Experience, whereby the personality states of an
 individual trigger opposite states in other people interacting with them.
 Overall, these findings encourage further research to characterize
 face-to-face and social interactions in terms of their relevance to
 personality states.
description: Big-Five Personality
 States surveysIn the attached file
 big-five personality scores (1-7) are given for the 52 participants,
 filled three times a day for 6 weeks period. The schema of the file is: ID
 of the participant | Timestamp | Extraversion | Agreeableness
 |Conscientiousness | EmotionalStability | Creativitysurvey_with_traits_date.csvSociometric badge dataAttached, sociometric badge's IR sensor data collected by 52 participants is given. The sensors collect the social interaction of the participants in the work environment by Infrared sensors. The schema of the file is: Ego ID | Alter ID | TimestampData_IR_withNewLabels.csv
DOI: 10.4121/47b050fe-bf78-4aed-b7a4-38d06d3ddb9a.v1
title: Microscopy, image analysis and computational data underlying the publication "A non-canonical role for Jagged1 in endothelial mechanotransduction"

description: The Notch signaling pathway plays a crucial role in regulating endothelial biology. Notch signaling is sensitive to hemodynamic forces and governs mechanically-driven cardiovascular development, physiology, and remodeling. However, mechanisms integrating mechanical forces with the Notch pathway remain largely unknown. Here, we uncover a non-canonical role for the Notch ligand Jagged1 as a mechanotransducer in endothelial cells. Jagged1 undergoes polarization in response to laminar shear stress and exhibits an unimodal expression pattern, peaking at a shear stress magnitude of 0.8-1 Pa. Jagged1 regulates endothelial mechanotransduction via the VEGFR2/ERK pathway. Deletion of Jagged1 results in reduced shear stress-induced kinase activity in vitro and diminished kinase activity in zebrafish embryos, without affecting canonical Notch signaling. Furthermore, direct physical activation of Jagged1 using antibody-conjugated beads triggers VEGFR2/ERK2 signaling, mediated by Jagged1-Src interaction and Src activation. These findings highlight a novel, non-canonical function of Jagged1 as a mechanotransducer in endothelial cells.<br>This dataset contains microscopy and image analysis data from in vivo and in vitro experiments related to Jagged1 in the endothelial response to hemodynamic stress. It also includes computer fluid dynamics simulations of an orbital shaker system to induce controlled shear stress magnitude and flow pattern.
DOI: 10.5281/zenodo.18386033
title: Data for: Arbuscular mycorrhizal field colonization and nursery responsiveness of the Canary endemic Artemisia thuscula along contrasting volcanic island soils

description: Dataset for “Arbuscular mycorrhizal field colonization and nursery responsiveness of the Canary endemic Artemisia thuscula along contrasting volcanic island soils” (Applied Soil Ecology).

This Zenodo record provides the summarized data underpinning the published article (Tables 1–2, Tables S1–S5, Figures 1–2 and Figure S1) together with underlying replicate-level CSV files (field soil and foliar properties, field AM root colonization, and nursery substrate, foliar and growth response data). A README and CODEBOOK are included to describe file structure, variables and units.

Publisher DOI will be added upon online publication.
DOI: 10.5061/dryad.t84p3
title: Data from: Human management and hybridization shape treegourd fruits in the Brazilian Amazon Basin

description: Local people's perceptions of cultivated and wild agrobiodiversity,
 as well as their management of hybridization are still understudied in
 Amazonia. Here we analyze domesticated treegourd (Crescentia cujete),
 whose versatile fruits have technological, symbolic and medicinal uses. A
 wild relative (C. amazonica) of the cultivated species grows spontaneously
 in Amazonian flooded forests. We demonstrated, using whole chloroplast
 sequences and nuclear microsatellites, that the two species are strongly
 differentiated. Nonetheless, they hybridize readily throughout Amazonia
 and the proportions of admixture correlate with fruit size variation of
 cultivated trees. New morphotypes arise from hybridization, and are
 recognized by people and named as local varieties. Small hybrid fruits are
 used to make the important symbolic rattle (maracá), suggesting that
 management of hybrid trees is an ancient human practice in Amazonia.
 Effective conservation of Amazonian agrobiodiversity needs to incorporate
 this interaction between wild and cultivated populations that is managed
 by smallholder families. Beyond treegourd, our study clearly shows that
 hybridization plays an important role in tree crop phenotypic
 diversification, and that the integration of molecular analyses and
 farmers'perceptions of diversity help disentangle crop domestication
 history.
description: Genotypes of treegourd
 in AmazoniaThis file was applied to
 run Structure analyses. The first column shows the labels of the samples
 which correspond to the Collection_codes in the passport (Table S1). The
 other columns indicate the 8 nuclear SSR loci analysed. The lines indicate
 the genotypes. Missing data was indicated as -9.genotypes_treegourd.txtSequence_alignments_cp_treegourdThe sequence alignments are shown using the nexus format. This file was applied to estimate chloroplast diversity analysis and construct the haplotype network, performed respectively in DNAsp and POPART softwares. The labels of the samples correspond to the Sequencing_codes in the passport (Table S1).cp_SNPs_treegourd.nex
DOI: 10.5281/zenodo.17257400
title: Data for: Arbuscular mycorrhizal field colonization and nursery responsiveness of the Canary endemic Artemisia thuscula along contrasting volcanic island soils

description: Dataset for “Arbuscular mycorrhizal field colonization and nursery responsiveness of the Canary endemic Artemisia thuscula along contrasting volcanic island soils” (Applied Soil Ecology).

This Zenodo record provides the summarized data underpinning the published article (Tables 1–2, Tables S1–S5, Figures 1–2 and Figure S1) together with underlying replicate-level CSV files (field soil and foliar properties, field AM root colonization, and nursery substrate, foliar and growth response data). A README and CODEBOOK are included to describe file structure, variables and units.

Publisher DOI will be added upon online publication.
DOI: 10.6084/m9.figshare.29365349
title: Italian MagicCATs_Dataset

description: This study validated the Magic Curiosity Arousing Tricks (MagicCATs) dataset, a collection of 166 short magic trick videos designed to elicit epistemic emotions such as curiosity, surprise, and interest. Involving 654 Italian participants aged 18 to 86, we assessed emotional and cognitive responses to the stimuli using both binary and Likert-scale measures. The results confirm the dataset’s effectiveness in eliciting epistemic emotions even in a cultural context different from the original. This work provides evidence of ecological validity and experimental utility, opening new opportunities for its application in psychology, neuroscience, education, and cognitive aging research.
DOI: 10.6084/m9.figshare.29365349.v2
title: Italian MagicCATs_Dataset

description: This study validated the Magic Curiosity Arousing Tricks (MagicCATs) dataset, a collection of 166 short magic trick videos designed to elicit epistemic emotions such as curiosity, surprise, and interest. Involving 654 Italian participants aged 18 to 86, we assessed emotional and cognitive responses to the stimuli using both binary and Likert-scale measures. The results confirm the dataset’s effectiveness in eliciting epistemic emotions even in a cultural context different from the original. This work provides evidence of ecological validity and experimental utility, opening new opportunities for its application in psychology, neuroscience, education, and cognitive aging research.
DOI: 10.6084/m9.figshare.29365349.v3
title: Italian MagicCATs_Dataset

description: This study validated the Magic Curiosity Arousing Tricks (MagicCATs) dataset, a collection of 166 short magic trick videos designed to elicit epistemic emotions such as curiosity, surprise, and interest. Involving 654 Italian participants aged 18 to 86, we assessed emotional and cognitive responses to the stimuli using both binary and Likert-scale measures. The results confirm the dataset’s effectiveness in eliciting epistemic emotions even in a cultural context different from the original. This work provides evidence of ecological validity and experimental utility, opening new opportunities for its application in psychology, neuroscience, education, and cognitive aging research.
DOI: 10.5061/dryad.qd2nj
title: Data from: Identifying the effects of education on the ability to cope with a disability among individuals with disabilities

description: The literature on disability has suggested that an educated individual
 with a disability is more likely to better cope with her/his disability
 than those without education. However, few published studies explore
 whether the relationship between education and ability to cope with a
 disability is anything more than an association. Using data on disability
 and accommodation from a large Danish survey from 2012–13 and exploiting a
 major Danish schooling reform as a natural experiment, we identified a
 potential causal effect of education on both economic (holding a job) as
 well as social (cultural activities, visiting clubs/associations, etc.)
 dimensions of coping among individuals with a disability, controlling for
 background factors, functioning, and disability characteristics. We found
 that endogeneity bias was only present in the case of economic
 participation and more educated individuals with a disability indeed had
 higher levels of both economic and social coping. To some extent, having
 more knowledge of public support systems and higher motivation explained
 the better coping among the group of individuals with disabilities who
 were educated. Our results indicated, however, that a large part of the
 effect of education on the ability to cope with a disability among
 individuals with disabilities was suggestive of a causal relationship.
description: SHILD2012_cens_eng_16-64Survey of a random sample of 19000 persons 16-64 years in Denmark autumn 2012.
DOI: 10.5061/dryad.fn5g2
title: Data from: Species colonisation, not competitive exclusion, drives community overdispersion over long-term succession

description: Ecological communities often transition from phylogenetic and functional
 clustering to overdispersion over succession as judged by space-for-time
 substitution studies. Such a pattern has been generally attributed to the
 increase in competitive exclusion of closely related species with similar
 traits through time, although colonisation and extinction have rarely been
 examined. Using 44 years of uninterrupted old-field succession in New
 Jersey, USA, we confirmed that phylogenetic and functional clustering
 decreased as succession unfolded, but the transition was largely driven by
 colonisation. Early colonists were closely related and functionally
 similar to residents, while later colonists became less similar to the
 species present. Extirpated species were generally more distantly related
 to residents than by chance, or exhibited random phylogenetic/functional
 patterns, and their relatedness to residents was not associated with time.
 These results provide direct evidence that the colonisation of distant
 relatives, rather than extinction of close relatives, drives phylogenetic
 and functional overdispersion over succession.
description: temporal community
 matrixSite by species
 matrixsamplewhole.txttraitstrait data for all speciestrait.xlsxThree phylogeniesSupplement 1_Three phylogenies.txt
DOI: 10.5061/dryad.71s06
title: Data from: Speciation network in Laurasiatheria: retrophylogenomic signals

description: Rapid species radiation due to adaptive changes or occupation of new
 ecospaces challenges our understanding of ancestral speciation and the
 relationships of modern species. At the molecular level, rapid radiation
 with successive speciations over short time periods—too short to fix
 polymorphic alleles—is described as incomplete lineage sorting. Incomplete
 lineage sorting leads to random fixation of genetic markers and hence,
 random signals of relationships in phylogenetic reconstructions. The
 situation is further complicated when you consider that the genome is a
 mosaic of ancestral and modern incompletely sorted sequence blocks that
 leads to reconstructed affiliations to one or the other relative,
 depending on the fixation of their shared ancestral polymorphic alleles.
 The laurasiatherian relationships among Chiroptera, Perissodactyla,
 Cetartiodactyla, and Carnivora present a prime example for such enigmatic
 affiliations. We performed whole-genome screenings for phylogenetically
 diagnostic retrotransposon insertions involving the representatives bat
 (Chiroptera), horse (Perissodactyla), cow (Cetartiodactyla), and dog
 (Carnivora), and extracted among 162,000 preselected cases 102 virtually
 homoplasy-free, phylogenetically informative retroelements to draw a
 complete picture of the highly complex evolutionary relations within
 Laurasiatheria. All possible evolutionary scenarios received considerable
 retrotransposon support, leaving us with a network of affiliations.
 However, the Cetartiodactyla–Carnivora relationship as well as the basal
 position of Chiroptera and an ancestral laurasiatherian hybridization
 process did exhibit some very clear, distinct signals. The significant
 accordance of retrotransposon presence/absence patterns and flanking
 nucleotide changes suggest an important influence of mosaic genome
 structures in the reconstruction of species histories.
description: Supplemental_Material_S3-S5Supplemental Material S3: Alignments of retrotransposon markers for Chiroptera-Perissodactyla-Cetartiodactyla-Carnivora relationships. Supplemental Material S4: Concatenated alignments of retrotransposon flanking regions. Supplemental Material S5: Alignments of deletion markers.
DOI: 10.5061/dryad.cd6tv
title: Data from: Effects of deer on woodland structure revealed through terrestrial laser scanning

description: Terrestrial laser scanning (TLS) captures the three-dimensional structure
 of habitats. Compared to traditional methods of forest mensuration, it
 allows quantification of structure at increased resolution, and the
 derivation of novel metrics with which to inform ecological studies and
 habitat management. Lowland woodlands in the UK have altered in structure
 over the last century due to increased abundance of deer and a decline in
 management. We compared whole-canopy profiles between woodlands with high
 (&gt;10 deer km−2) and low deer density (c. 1 deer km−2), and in
 stands with and without records of management interventions in the last 20
 years, providing a test case for the application of TLS in habitat
 assessment for conservation and management. Forty closed-canopy lowland
 woodlands (height range 16·5–29·4 m) were surveyed using TLS in two
 regions of the UK, divided into areas of high- and low-deer abundance, and
 between plots which had been recently managed or were unmanaged.
 Three-dimensional reconstructions of the woodlands were created to
 document the density of foliage and stem material across the entire
 vertical span of the canopy. There was a 68% lower density of understorey
 foliage (0·5–2 m above-ground) in high-deer woodlands, consistent in both
 regions. Despite this, total amounts of foliage detected across the full
 canopy did not differ between deer density levels. High-deer sites were 5
 m taller overall and differed in the distribution of foliage across their
 vertical profile. Managed woodlands, in contrast, exhibited relatively
 minor differences from controls, including a lower quantity of stem
 material at heights from 2 to 5 m, but no difference in foliage density.
 All main effects were replicated equally in both regions despite notable
 differences in stand structures between them. Synthesis and applications.
 Terrestrial laser scanning allows ecologists to move beyond
 two-dimensional measures of vegetation structure and quantify patterns
 across complex, heterogeneous, three-dimensional habitats. Our findings
 suggest that reduction of deer populations is likely to have a strong
 impact on woodland structures and aid in restoring the complex understorey
 habitats required by many birds, whereas management interventions as
 currently practiced have limited and inconsistent effects.
description: eichhorn_woodmadTerrestrial Laser Scanning data from woods surveyed in the WoodMAD (Woodland Management And Deer) project. Columns give plot name (site and compartment number), region (s: Weald, w: Welsh Marches), UK county, deer density (high or low), records of management within the last 20 years (yes or no), dominant tree species, height of canopy layer (10 cm bands), subplot (five of 10 x 10 m, labelled a--e), foliage and stem density (number of 1 cm3 voxels filled per m3).
DOI: 10.5061/dryad.b5b4h
title: Data from: Carbon stocks and dynamics at different successional stages in an Afromontane tropical forest

description: As a result of different types of disturbance, forests are a mixture of
 stands at different stages of ecological succession. Successional stage is
 likely to influence forest productivity and carbon storage, linking the
 degree of forest disturbance to the global carbon cycle and climate.
 Although tropical montane forests are an important part of tropical forest
 ecosystems (c. 8 %, elevation &gt; 1000 m a.s.l.), there are still
 significant knowledge gaps regarding the carbon dynamics and stocks of
 these forests, and how these differ between early (ES) and late
 successional (LS) stages. This study examines the carbon (C) stock,
 relative growth rate (RGR), and net primary production (NPP) of ES and LS
 forest stands in an Afromontane tropical rainforest using data from
 inventories of quantitatively important ecosystem compartments in fifteen
 0.5 ha plots in Nyungwe National Park in Rwanda. The total C stock was
 35 % larger in LS compared to ES plots due to significantly larger above
 ground biomass (AGB; 185 and 76 Mg C ha−1 in LS and ES plots,
 respectively), while the soil and root C stock (down to 45 cm depth in the
 mineral soil) did not significantly differ between the two successional
 stages (178 and 204 Mg C ha−1 in LS and ES plots, respectively). The main
 reasons for the difference in AGB were that ES trees had significantly
 lower stature and wood density compared to LS trees. However, ES and LS
 stands had similar total NPP (canopy, wood and roots of all plots
 ~ 9.4 Mg C ha−1) due to counterbalancing effects of differences in AGB
 (higher in LS stands) and RGR (higher in ES stands). The AGB in the LS
 plots was considerably higher than the average value reported for
 old-growth tropical montane forest of Southeast Asia and central and South
 America at similar elevations and temperatures, and of the same magnitude
 as in tropical lowland forest of different regions. The results of this
 study highlight the importance of accounting for disturbance regimes and
 differences in wood density and allometry of tree species dominating at
 different successional stages in attempts to quantify the C stock and sink
 strength of tropical montane forests and how it may differ among
 continents.
description: Above ground biomass in
 Nyungwe tropical montane forestThe data file contain
 the following information in separte sheets: (1) Plots, (2) Species,
 Breast height diameter classes, Above-ground biomass, Recruitment and
 mortality of trees, (3) Height vs DBH relationship, (4) Wood density, (5)
 Header definition, (6) Citations, (7) Data use policy.Data package Nyirambangutse et
 al 2017.xlsx