cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26188/25479160.v1
title: DUN.protein.fasta

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.6084/m9.figshare.17275847.v1
title: Prisma Checklist

description: Prisma checklist pages, tables and figures are guided.
DOI: 10.6084/m9.figshare.23197838.v2
title: Data files

description: Is the Gini Coefficient Enough? A Microeconomic Data Decomposition StudyIvan Skliarov, Lukasz Goczek (2023).<br>List of data files:<br>1. theil_raw.csv - data obtained from LISSY using the lis_theil.R script.*2. scv_raw.csv - data obtained from LISSY using the scv_theil.R script.*3. hdi.csv - Human Development Index and its components.4. gini.csv - Gini coefficient from SWIID 9.4.5. wdi.csv - World Development Indicators from the World Bank.6. wgi.csv - World Governance Indicators from the World Bank.7. govcon.csv - government consumption (% of GDP) from UNCTAD.8. theil_fin.csv - final dataset (1, 3-7 combined), which is used in lis_analysis.do.9. scv_fin.csv - final dataset (2-7 combined), which is used in lis_analysis.do.10. indexes.csv - only within and between-cohort components of the Theil index and SCV with imputed values (see lis_analysis.do) for Georgia and Lithuania, which is used in lis_plot.R. <br>* LISSY is the remote-execution system allowing access to the Luxembourg Income Study database: https://www.lisdatacenter.org/data-access/lissy/.<br>For questions about this research please contact:Ivan Skliarov, MA: Faculty of Economic Sciences, University of Warsaw, Poland, Długa 44/50, Warsaw 00-241, Poland, i.skliarov@student.uw.edu.pl.Lukasz Goczek, PhD: Faculty of Economic Sciences, University of Warsaw, Poland, Długa 44/50, Warsaw 00-241, Poland, lgoczek@wne.uw.edu.pl.
DOI: 10.6084/m9.figshare.3565431.v1
title: Appendix B. Trait values for the freshwater native and nonnative fish species of the Colorado River Basin examined in our study.

description: Trait values for the freshwater native and nonnative fish species of the Colorado River Basin examined in our study.
DOI: 10.6084/m9.figshare.6213878.v1
title: Flu Vaccine Tweets

description: This project contains two data files in tab-separated values format.<br>annotations.tsv - The first column is the tweet ID, and the second column is the annotation ('yes' or 'no') for whether the tweet indicates that the someone received or intended to receive a flu vaccine. <br>data.tsv - This file contains over 1.2 million tweets containing at least one influenza-related term and one vaccination-related term. The second and third columns are the classifier probabilities that the tweet is positive for vaccine intent (using logistic regression and convolutional neural network, respectively). The remaining columns are the metadata we extracted or inferred (time, location, and gender). Tweets corresponding to the IDs can be downloaded using the Twitter API.
DOI: 10.6084/m9.figshare.7927151.v1
title: datasets.csv

description: Poor life quality and suicide behavior among Chinese adolescent students with internet addiction
DOI: 10.6084/m9.figshare.20279559.v1
title: dataset_Deep Learning for the Diagnosis of Mesial Temporal Lobe Epilepsy

description: Two or three continuous coronal sections of T2WI at the level of the anterior commissure from patients with MTLE and those with other diseases such as psychogenic nonepileptic seizures (control subjects) were prepared for AI analysis. MR images were allocated to two datasets: learning and test datasets. The learning data were used for deep learning, whereas the test data were used for analyzing the diagnostic accuracy (i.e., validation). The test data included 30% of all data. MRI data of patients with MTLE with the hippocampus as the epileptogenic area included four images on T2WI (25.0%) and six images on FLAIR (21.4%). MRI data of control subjects included 77 images on T2WI (36.5%) and 77 images on FLAIR (27.7%). After the deep learning process, the diagnostic accuracy was calculated using the test data from T2-weighted images and FLAIR images.
DOI: 10.6084/m9.figshare.5123296.v1
title: Supplementary Material for: Involvement of Can f 5 in a Case of Human Seminal Plasma Allergy

description: <b><i>Background:</i></b> The existence of IgE binding to dog dander extract without IgE antibodies against the described dog allergens (Can f 1, 2, 3 and 4) implies the presence of other dog allergens yet to be identified. Recently, an IgE-binding protein was isolated from dog urine and identified as prostatic kallikrein; it has been named Can f 5. Cross-reactivity between a dog dander allergen and human prostate-specific antigen (PSA) has been described. The aim of this study was to identify the dog dander allergen that presents cross-reactivity with PSA and demonstrate its clinical relevance in our patient with human seminal plasma allergy. <b><i>Methods:</i></b> SDS-PAGE immunoblotting and inhibition tests were performed. Mass spectrometry was carried out to identify the protein involved in the allergy reactions. <b><i>Results:</i></b> SDS-PAGE immunoblotting-inhibition with an IgE-binding protein from dog prostatic secretion showed total IgE binding inhibition to a 28-kDa IgE-reactive band identified as PSA. The electroeluted protein from dog prostatic secretion was identified by mass spectrometry as Can f 5. IgE immunoblotting of human seminal plasma incubated with the serum of the patient revealed two IgE-binding bands (28 and 32.7 kDa). Both SDS-PAGE immunoblotting inhibition assays, with human seminal plasma or purified PSA in solid phase, showed complete IgE binding inhibition when the serum of the anaphylactic patient was preincubated with dog dander extract or recombinant Can f 5. <b><i>Conclusions:</i></b> The dog dander allergen that shows cross-reactivity with human PSA has been characterized and turns out to be the recently described Can f 5. We demonstrated the clinical relevance of this cross-reactivity in a patient.
DOI: 10.17632/gd9jktx8d8
title: Is AI a Key Driving Force for Chinese Total Factor Productivity Growth?

description: This replication folder contains the code and data used to obtain the results presented in the paper “Is AI a Key Driving Force for Chinese Total Factor Productivity Growth? Mechanistic Analysis of Employment, Supply Chain, and Information Asymmetry” by Ruifeng Xu and Frank M. Song.
DOI: 10.6084/m9.figshare.10048358.v1
title: Table S2 from Intraspecific male combat behaviour predicts morphology of cervical vertebrae in ruminant mammals

description: Results of PGLS analyses of female vertebral measurements on female body mass + female weapon presence/absence.
DOI: 10.6084/m9.figshare.11394657.v1
title: GRF_metadata

description: The metadata file contains annotations and additional subject-related information. It is structured as a matrix with N rows x M columns. Here, the first two columns hold the SUBJECT_ID and SESSION_ID, the other columns hold information such as class labels, sex, body mass, age, shod-condition, etc.. Note that this information is available in all records. Missing values are identified as „NaN“. A particularly notable field is AFFECTED_SIDE, which indicates which leg is affected by a certain impairment (e.g. left knee) or if both sides are affected.
DOI: 10.6084/m9.figshare.1451369.v3
title: parkinson's disease

description: This is the MRI datasets.
DOI: 10.6084/m9.figshare.17111972.v1
title: STXBP1_submissionPackage.zip

description: Data and code to replicate the figures in the paper: "<i>STXBP1</i> Syndrome Is Characterized by Inhibition-Dominated Dynamics of Resting-State EEG".
DOI: 10.6084/m9.figshare.18972935.v1
title: RAAAP-2 Datasets (17 linked datasets)

description: This collection contains the 17 anonymised datasets from the RAAAP-2 international survey of research management and administration professional undertaken in 2019. To preserve anonymity the data are presented in 17 datasets linked only by <i>AnalysisRegionofEmployment</i>, as many of the textual responses, even though redacted to remove institutional affiliation could be used to identify some individuals if linked to the other data. Each dataset is presented in the original SPSS format, suitable for further analyses, as well as an Excel equivalent for ease of viewing. There are additional files in this collection showing the the questionnaire and the mappings to the datasets together with the SPSS scripts used to produce the datasets.
DOI: 10.6084/m9.figshare.21288060.v1
title: Collated vein and control dataset for OA.xlsx

description: The dataset of number and types/sizes or microplastic particles in vein and control samples
DOI: 10.6084/m9.figshare.24272110.v1
title: Automatic Identification of Illegal Construction and Demolition Waste Landfills: A Computer Vision Approach.

description: This link contains the raw data, which includes 35 environmental reports for construction and demolition waste landfills, data information for 231 landfills, and 360 raw images of construction and demolition waste landfills used for the experiments and the corresponding labels.
DOI: 10.6084/m9.figshare.6865607.v1
title: Supplementary Material for: Insights from the WHO and National Lists of Essential Medicines: Focus on Pediatric Diabetes Care in Africa

description: <b><i>Background:</i></b> Access to essential medicines in pediatric endocrinology and diabetes is limited in resource-limited countries. The World Health Organization (WHO) maintains two non-binding lists of essential medicines (EMLs) which are often used as a template for developing national EMLs. <b><i>Methods:</i></b> We compared a previously published master list of medicines for pediatric endocrinology and diabetes with the WHO EMLs and national EMLs for countries within the WHO African region. To better understand actual access to medicines by patients, we focused on diabetes and surveyed pediatric endocrinologists from 5 countries and assessed availability and true cost for insulin and glucagon. <b><i>Results:</i></b> Most medicines that are essential in pediatric endocrinology and diabetes were included in the national EMLs. However, essential medicines, such as fludrocortisone, were present in less than 30% of the national EMLs despite being recommended by the WHO. Pediatric endocrinologists from the 5 focus countries reported significant variation in terms of availability and public access to insulin, as well as differences between urban and rural areas. Except for Botswana, glucagon was rarely available. There was no significant relationship between Gross National Income and the number of medicines included in the national EMLs. <b><i>Conclusions:</i></b> Governments in resource-limited countries could take further steps to improve EMLs and access to medicines such as improved collaboration between health authorities, the pharmaceutical industry, patient groups, health professionals, and capacity-building programs such as Paediatric Endocrinology Training Centres for Africa.
DOI: 10.17632/436c36cx9w
title: Dataset for Materials Characterization paper 2020

description: Excel pages with the processed data for the Figures included in paper.
DOI: 10.17632/cdsz2ddv3t
title: 10 Gene Microarray Datasets

description: 10 Microarray data sets studied in the paper `D. Chen, J, Jin, and Z.T. Ke (2023) Subject clustering by IF-PCA and several recent methods'. See `ReadMe.rtf' for details.
DOI: 10.23645/epacomptox.7144100.v2
title: Archived Distributed Structure-Searchable Toxicity (DSSTox) Data

description: The most updated EPA DSSTox data files are available https://doi.org/10.23645/epacomptox.5588566 . EPA’s Distributed Structure-Searchable Toxicity (DSSTox) database contains curated chemical substances mapped to data including chemical identifiers (i.e., chemical synonyms, systematic names, CAS Registry Numbers and others) and, where appropriate, chemical structure representations. The goal for DSSTox is to accurately represent chemical substances, their structures and identifiers, as well as relevant chemical lists which are important to the environmental research and regulatory community.Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.6084/m9.figshare.27233640.v2
title: Motion-blurred UAVs and their temperature waveform time series

description: In the extracted folder, BLURRED1095 is a selection of motion blur images from the 12,000 images. The folder named "*-Gnoise,mean=*,var=*" refers to the image processed by Gaussian noise of mean and var parameters in BLURRED1095 data. BLURRED1095xmls refers to the label of drone in BLURRED1095 image data. BLURRED1095-342-2394 refers to the temperature waveform sequence extracted from all the above images. Label 0 in the sequence represents the negative sample, and 1 represents the positive sample. Blurred1095-342-2394-scene adds the classification of different scenes. BLURRED1095-342-2394-scene-guas-severe is a further addition to the "severe motion blur or not" category.
DOI: 10.6084/m9.figshare.7575944.v1
title: Raw_Data

description: This raw data is about the morphology, anatomy and ultrastructure.
DOI: 10.6084/m9.figshare.7734362.v1
title: Additional file 2: of Identification of functional long non-coding RNAs in C. elegans

description: Annotation of the novel lncRNAs in C. elegans (GTF 878 kb)
DOI: 10.17028/rd.lboro.3518138.v1
title: Comparison of Polarization curves from the model and test data at different temperatures

description: Figure 2 of Selection of optimal sensors for predicting performance of polymer electrolyte membrane fuel cell, which is published in Journal of Power Sources
DOI: 10.17632/bpvj6xczm2
title: High Tibial Osteotomy

description: X-ray scalometry images of patients with leg deformity performed in an anterior-posterior (AP) view. Images were taken at ORTOTOP Medical Center (Poland).
DOI: 10.6084/m9.figshare.18646118.v5
title: Annexure_ClinicalTrials_Prediction_MLSampleData

description: The attachment contains few samples of data curated in house for Machine learning model development<br>
DOI: 10.6084/m9.figshare.21975890.v1
title: Supplementary Material for: Efficacy and Safety of a Persian Medicine Formula on Functional Dyspepsia Symptoms: A Randomized Double-blind Active-control Clinical Trial

description: Introduction: Functional Dyspepsia (FD) is one of the most frequent gastrointestinal disorders with a high burden. Although FD is a heterogeneous disorder without any standard therapy (treatment/treatment – repetition), there is a wide history of using herbal remedies for its treatment. Two of these herbal remedies quoted in various Persian medicine resources are Celery and Ajwain. Their effects have been investigated in recent clinical trials in FD patients. We aimed to compare the effect of Celery and Ajwain to that of Domperidone in patients with postprandial distress syndrome. Methods: This is a randomized double-blind active-control clinical trial, conducted at Kerman, Iran in 2020. Participants of this study were 100 patients suffering from FD (postprandial distress syndrome subtype). The intervention group received 1 g of the combination of Celery and Ajwain (Apium graveolens L. and Trachyspermum copticum (L.) Link) while the control group received 30 mg of Domperidone per day for 4 consecutive weeks. Primary outcomes were symptoms severity and frequency, and secondary outcomes were quality of life (QoL) and safety. All outcomes were assessed at the end of the trial, and also 4 weeks after the trial was finished. Results: No significant differences in symptoms frequency were found between groups. However, differences in symptoms severity were found at the end of the follow-up (week 8) (P= 0.001). The intra-group analysis showed a significant decrease in the symptoms severity and frequency at the end of week 4 in both groups (P&lt;0.001). QoL in the intervention group was higher compared to the control group at the end of the study (P&lt;0.001) and at the point of the follow-up (week 8; P&lt;0.001). No serious adverse events occurred in either group. Conclusion: The herbal mixture of Celery and Ajwain could be considered a safe and effective remedy, decreasing the severity of symptoms and increasing QoL in patients with postprandial distress syndrome. It is further suggested to confirm these findings in high-quality multi-center clinical trials.
DOI: 10.6084/m9.figshare.26139454.v1
title: FAST-NN_data.zip

description: Datasets used in the paper presenting the FAST-NN model. Datasets are in the MS file format. Folder names correspond to the datasets presented in the paper. BASEx.txt contains neutral simulations, and TESTx.txt contains selective sweep simulations.
DOI: 10.6084/m9.figshare.28010186.v1
title: Students with disabilities

description: Students with different disabilities
DOI: 10.17632/z62gdty498
title: Academic Data Derived from Blended Learning

description: The data were collected from the digital infrastructure of the University.  The dataset provided for this research is constructed using data from two different platforms: The MS Team platform and the Open eClass Platform. 

Our dataset was extracted from MS Teams and includes 13 attributes related to the course meetings that lecturers participate in. Our next source of data is the (open) eClass Platform which includes statistics about the student’s behavior on the platform. Data are completely anonymized, as no reference to the participant is kept. Only a newly auto-increment ID per student is used. The final dataset of student profile consists of 32 attributes, and it requires preprocessing in order to eliminate the parameters which are going to feed the classification algorithms.
DOI: 10.6084/m9.figshare.29114120.v1
title: Dataset-mild-bottleneck-testing

description: Dataset with mild bottleneck.The commands to generate MS files are:test/neutral.ms: ./msdir/ms 128 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10100000000000000000 13380 19597 12002<br>test/selsweep.ms: ./msseldir/mssel 128 1000 0 128 ./trajectory_files/trajectory2.txt 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10100000000000000000 13380 19597 12002
DOI: 10.15131/shef.data.11662902.v1
title: The dietary impact of the Norman Conquest project data

description: This database contains the full dataset generated during the Dietary Impact of the Norman Conquest Project and published in the paper 'The Dietary Impact of the Norman Conquest: A Multiproxy Archaeological Investigation of Oxford, UK'. <br>The data was obtained from analysis of archaeological materials from Oxford dating to 10th-13th centuries AD. The database is divided into five datasets based on method and material: residue analysis of pottery; bulk sample N and C isotope analysis of animal bone; bulk sample N and C isotope analysis of animal bone human bone; osteological analysis of human remains and incremental N and C isotope analysis of human tooth dentine. <br>Some data included in this file was not obtained by original research during this project. Where data has been synthesised from other sources, references to the original publication of the data are provided. References to relevant archaeological site reports are provided in the publication.<br>
DOI: 10.17632/5f28hjvd69
title: Data for: Robust master planning of a socially responsible supply chain under fuzzy-stochastic uncertainty (A case study of clothing industry)
DOI: 10.17632/jt8df8bgbr
title: Natvik and Henry_Differential effects of the grasses Festuca rubra, Andropogon gerardii, and Elymus virginicus on the growth of Eurasian versus North American oak seedlings

description: OVERVIEW OF RESEARCH: Research was conducted to compare how the origin of grass cover effects the growth of oak seedlings. Our hypothesis was that that grass species origin may influence oak recruitment. The experiment included 3 grasses species consisting of 2 species native to North America (Andropogon gerardii and Elymus virginicus) and 1 species native to Eurasia (Festuca rubra var. rubra). Comparisons were made between 6 oak species consisting of 3 species native to North America (Quercus alba, Q. macrocarpa, and Q. rubra) and 3 species native to Eurasia (Quercus acutissima, Q. cerris, and Q. robur). We predicted that oak seedlings would demonstrate greater growth when growing in grasses that they share a co-evolutionary history with. EXPERIMENTAL DESIGN: The 3 grass species were seeded into single-species plots measuring 6 x 7 metres. There were 8 plots seeded for each of the grass species (for a total of 24 grass plots). All 6 oak species were seeded into the plots as acorns. Each of the 24 plots contained 1 oak seedling of each species, with a total of 144 oak seedlings in the entire experiment (6 seedlings x 24 plots). DESCRIPTION OF DATA: 1. OAK SEEDLING MEASURMENTS: After 2 growing seasons, all oak seedlings were harvested. Measurements of each oak seedling were taken including stem height, stem diameter, total biomass (separated into stem biomass and root biomass), and root-to-shoot ratios. This data was analysed to compare the growth of all 6 oak species between the 3 species of grasses. 2. LIGHT READINGS: Photosynthetically Active Radiation (PAR) was measured from all of the grass plots at 15 cm above the soil surface during spring summer, and fall. These measurements indicate how much exposure to light the oak seedlings received across the growing season within the 3 different species of grasses. 3. SOIL TESTS: A range of soil parameters were measured from all grass plots at the end of the experiment (3 years after the grass plots were established). The purpose of the soil tests was to see if soil parameters were impacted in any way by the 3 different species of grasses. SUMMARY OF RESULTS: Our results demonstrate that grass cover has a significant but species-specific impact on the growth of two-year-old native and non-native oak seedlings. The variation in seedling growth in response to variation in grass cover was, in part, consistent with the hypothesis that grass species origin may influence oak recruitment, but there were nevertheless exceptions that could be explained in part by shading effects.