cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.j5424q
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aria vexans (E.F.Warb.) Sennikov & Kurtto",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 133 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072298-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dt5nqz
title: Occurrence Download

description: A dataset containing 7205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Noctiluca scintillans (Macartney) Ehrenberg",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7205 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006466-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tklmsa
title: Occurrence Download

description: A dataset containing 2689 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trientalis borealis Raf."
 ]
}

 The dataset includes 2689 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006466-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukrrkv
title: Occurrence Download

description: A dataset containing 339180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is International Barcode of Life project (iBOL)",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 339180 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013648-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3dyyr
title: Occurrence Download

description: A dataset containing 12793 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aristida adscensionis L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12793 records from 320 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072306-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ca3s2y
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia tilesii subsp. gormanii (Rydb.) Hultén",
 "Country is United States of America"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006466-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehjmyx
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aria wilmottiana (E.F.Warb.) Sennikov & Kurtto",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 95 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072302-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3fass
title: Occurrence Download

description: A dataset containing 428 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Annona nutans (R.E.Fr.) R.E.Fr."
 ]
}

 The dataset includes 428 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271614-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbwpeu
title: Occurrence Download

description: A dataset containing 6005249 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Issue is Geodetic datum assumed WGS84",
 "HasCoordinate is true",
 "TaxonKey is Fungi",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6005249 records from 644 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023946-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbbzw2
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chinese Taipei",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Manis pentadactyla Linnaeus, 1758"
 ]
}

 The dataset includes 88 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220220-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9hzkt
title: Occurrence Download

description: A dataset containing 3465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Draba alpina L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3465 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081364-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsdi0b
title: Occurrence Download

description: A dataset containing 260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Year 2014-2019",
 "Geometry POLYGON((-100.39581 19.82356,-100.69794 19.61154,-100.81329 19.42515,-100.82977 19.19705,-100.79132 19.005,-100.65948 18.91148,-100.06622 18.79712,-99.87396 18.81272,-99.51141 19.08288,-99.52789 19.40961,-99.46198 19.72534,-99.55536 19.91655,-100.09369 19.92171,-100.25299 19.85973,-100.39581 19.82356))",
 "TaxonKey is Danaus plexippus (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 260 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023958-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7gej3
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "GadmGid is USA.5_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Euphorbia hooveri L.C.Wheeler"
 ]
}

 The dataset includes 48 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011761-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tzvho
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crax blumenbachii Spix, 1825"
 ]
}

 The dataset includes 257 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023950-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qdprgs
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Institut Botanic de Barcelona (IBB, CSIC-Ajuntament de Barcelona), BC-Lichenotheca",
 "Geometry POLYGON((1.70957 41.2002,2.13414 41.26356,2.2368 41.36982,2.29263 41.44186,2.4133 41.48869,2.73567 41.62916,2.7224 41.65035,2.42339 41.82439,2.26564 42.02768,2.04391 42.23822,1.96803 42.26641,1.80225 42.20641,1.59703 41.66359,1.70957 41.2002))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ascomycota",
 "Year 1000-1965"
 ]
}

 The dataset includes 77 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017496-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aybtet
title: Occurrence Download

description: A dataset containing 27868770 species occurrences available in GBIF matching the query:
{
 "Continent" : [
 "is Africa"
 ]
}

 The dataset includes 27868770 records from 988 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324757-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14164797
title: Supplemental dataset to "Cloud sync in response to wave-like large-scale forcings"

description: This dataset deposits the supplemental materials for the manuscript "Cloud sync in response to wave-like large-scale forcings".

math_note.pdf  A hand-written math derivation note for equations in the appendices. 

movie_wL_006_T24hours.avi  A movie of near-surface (z=25m) water vapor mixing ratio for the wL=0.006m/s and T=24 hours experiment (the reference CM1 simulation).

movie_wL_006_T18hours.avi  A movie of near-surface (z=25m) water vapor mixing ratio for the wL=0.006m/s and T=18 hours experiment.

movie_wL_006_T12hours.avi  A movie of near-surface (z=25m) water vapor mixing ratio for the wL=0.006m/s and T=12 hours experiment.

movie_wL_000.avi  A movie of near-surface (z=25m) water vapor mixing ratio, without large-scale wave-like forcing.

input_sounding  The initial sounding for all CM1 simulations. 

namelist.input  The namelist file for launching all CM1 simulations. 

postprocessing_CM1.zip The postprocessing code of the CM1 simulations, including intermediate output files (.mat) in data postprocessing.  

microscopic_model.zip  The MATLAB code for the microscopic model. 

cm1.F  The CM1 script where the large-scale vertical velocity is programmed. You can copy it directly to your CM1/src/ path. 

Van_der_Pol.m  The MATLAB code for the forced Van der Pol oscillator.

movie_wL_006_T12hours_mosaic.avi  A movie of BL-averaged and coarse-grained equivalent potential temperature for the wL=0.006m/s and T=12 hours experiment.

movie_wL_006_T18hours_mosaic.avi  A movie of BL-averaged and coarse-grained equivalent potential temperature for the wL=0.006m/s and T=18 hours experiment.

movie_wL_006_T24hours_mosaic.avi  A movie of BL-averaged and coarse-grained equivalent potential temperature for the wL=0.006m/s and T=24 hours experiment (the reference CM1 simulation).

 

Feel free to send an email to Dr. Hao Fu (haofu@nju.edu.cn) or Dr. Da Yang (dayang@stanford.edu) if you have any questions!
DOI: 10.5281/zenodo.18003344
title: Supplemental dataset to "Cloud sync in response to wave-like large-scale forcings"

description: This dataset deposits the supplemental materials for the manuscript "Cloud sync in response to wave-like large-scale forcings".

math_note.pdf  A hand-written math derivation note for equations in the appendices. 

movie_wL_006_T24hours.avi  A movie of near-surface (z=25m) water vapor mixing ratio for the wL=0.006m/s and T=24 hours experiment (the reference CM1 simulation).

movie_wL_006_T18hours.avi  A movie of near-surface (z=25m) water vapor mixing ratio for the wL=0.006m/s and T=18 hours experiment.

movie_wL_006_T12hours.avi  A movie of near-surface (z=25m) water vapor mixing ratio for the wL=0.006m/s and T=12 hours experiment.

movie_wL_000.avi  A movie of near-surface (z=25m) water vapor mixing ratio, without large-scale wave-like forcing.

input_sounding  The initial sounding for all CM1 simulations. 

namelist.input  The namelist file for launching all CM1 simulations. 

postprocessing_CM1.zip The postprocessing code of the CM1 simulations, including intermediate output files (.mat) in data postprocessing.  

microscopic_model.zip  The MATLAB code for the microscopic model. 

cm1.F  The CM1 script where the large-scale vertical velocity is programmed. You can copy it directly to your CM1/src/ path. 

Van_der_Pol.m  The MATLAB code for the forced Van der Pol oscillator.

movie_wL_006_T12hours_mosaic.avi  A movie of BL-averaged and coarse-grained equivalent potential temperature for the wL=0.006m/s and T=12 hours experiment.

movie_wL_006_T18hours_mosaic.avi  A movie of BL-averaged and coarse-grained equivalent potential temperature for the wL=0.006m/s and T=18 hours experiment.

movie_wL_006_T24hours_mosaic.avi  A movie of BL-averaged and coarse-grained equivalent potential temperature for the wL=0.006m/s and T=24 hours experiment (the reference CM1 simulation).

 

Feel free to send an email to Dr. Hao Fu (haofu@nju.edu.cn) or Dr. Da Yang (dayang@stanford.edu) if you have any questions!
DOI: 10.15468/dl.safthh
title: Occurrence Download

description: A dataset containing 193331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GenusKey is Trillium",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 193331 records from 348 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063596-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18021400
title: Datasets and Scripts
DOI: 10.5281/zenodo.18021401
title: Datasets and Scripts
DOI: 10.5281/zenodo.16561299
title: TAILVAR (Terminal extension Analysis for Improved prediction of Lengthened VARiants)

description: TAILVAR is built using a Random Forest model that predicts the pathogenicity of stop-loss variants. By integrating a combination of in-silico prediction scores, transcript, and protein features of C-terminal extensions, TAILVAR provides a score ranging from 0 to 1, indicating the probability of pathogenic potential. TAILVAR score cutoffs ≥ 0.70 and ≤ 0.30 can be used to distinguish potential pathogenic/likely pathogenic and benign/likely benign variants.

For more information, please visit https://github.com/dr-yoon/TAILVAR
DOI: 10.5281/zenodo.13846885
title: TAILVAR (Terminal extension Analysis for Improved prediction of Lengthened VARiants)

description: TAILVAR is built using a Random Forest model that predicts the pathogenicity of stop-loss variants. By integrating a combination of in-silico prediction scores, transcript, and protein features of C-terminal extensions, TAILVAR provides a score ranging from 0 to 1, indicating the probability of pathogenic potential. TAILVAR score cutoffs ≥ 0.70 and ≤ 0.30 can be used to distinguish potential pathogenic/likely pathogenic and benign/likely benign variants.

For more information, please visit https://github.com/dr-yoon/TAILVAR
DOI: 10.6084/m9.figshare.30938411
title: Analysis Protocol for: Agile 3+ and CVD in MASLD

description: R analysis pipeline
DOI: 10.6084/m9.figshare.30938411.v1
title: Analysis Protocol for: Agile 3+ and CVD in MASLD

description: R analysis pipeline
DOI: 10.15468/dl.mkunvh
title: Occurrence Download

description: A dataset containing 10235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Apodolirion buchananii, Apodostigma pallens, Apodytes dimidiata, Aponogeton distachyos, Aponogeton rehmannii, Aporrhiza paniculata, Ceropegia europaea, Aptosimum arenarium, Aptosimum decumbens, Aptosimum gossweileri, Aptosimum indivisum, Aptosimum lineare, Aptosimum procumbens, Aptosimum spinescens, Aptosimum welwitschii, Aquilaria malaccensis, Aquilegia vulgaris, Arachis hypogaea, Araucaria heterophylla, Araujia sericifera, Arbutus unedo, Archidendron chevalieri, Arctium atlanticum, Arctium lappa, Arctopus dregei)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Country is one of (Algeria, Angola, Benin, Botswana, Burkina Faso, Burundi, Cameroon, Cabo Verde, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Côte d’Ivoire, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Zambia, Zimbabwe, Western Sahara)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10235 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063609-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sg3246
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "TaxonKey is Cetrariella commixta"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063608-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18028865
title: TCR β CDR3 Repertoire Signatures in Paired PBMC and BALF From Children With Mycoplasma pneumoniae Pneumonia
DOI: 10.5281/zenodo.18028866
title: TCR β CDR3 Repertoire Signatures in Paired PBMC and BALF From Children With Mycoplasma pneumoniae Pneumonia
DOI: 10.25909/30124843
title: Cervical spine axial impact, effect of posture and head constraint, 1m/s - Resource Materials: Cervical Spine Kinetic and Kinematic Datasets

description: The dataset includes processed data spreadsheets for each test, where each test is labelled with the specimen ID and test label. Files are in .xlsx format.The test label (filename) contains three components, separated by underscores, consistent with the manuscript nomenclature:1) End condition (FC, RC, UC) [fully constrained; rotationally constrained, unconstrained]2) Eccentricity group (000, 050, 100) [in %]3) Velocity (e.g. ID01_FC_000_1ms -&gt; Specimen 1, fully constrained, low eccentricity, 1 m/s). [all tests in this dataset were performed at 1 m/s impact velocity]Refer to the column headers for the order of the kinematics and kinetic data.Units: time (s), force (N), moment (Nm), translation (mm), rotation (deg).Specimens IDs, and all experimental details, correspond to those detailed in the following manuscript:D.W. Thompson-Bagshaw, R.D. Quarrington, P.A. Cripton, C.F. Jones, Cervical spine posture, but not head-end motion constraints, governs the kinematic and kinetic response in sub-injurious axial impacts. Journal of the Mechanical Behavior of Biomedical Materials, 2025, 107321, doi.org/10.1016/j.jmbbm.2025.107321.Please cite this manuscript and this dataset, when using the data.
DOI: 10.25909/30124843.v1
title: Cervical spine axial impact, effect of posture and head constraint, 1m/s - Resource Materials: Cervical Spine Kinetic and Kinematic Datasets

description: The dataset includes processed data spreadsheets for each test, where each test is labelled with the specimen ID and test label. Files are in .xlsx format.The test label (filename) contains three components, separated by underscores, consistent with the manuscript nomenclature:1) End condition (FC, RC, UC) [fully constrained; rotationally constrained, unconstrained]2) Eccentricity group (000, 050, 100) [in %]3) Velocity (e.g. ID01_FC_000_1ms -&gt; Specimen 1, fully constrained, low eccentricity, 1 m/s). [all tests in this dataset were performed at 1 m/s impact velocity]Refer to the column headers for the order of the kinematics and kinetic data.Units: time (s), force (N), moment (Nm), translation (mm), rotation (deg).Specimens IDs, and all experimental details, correspond to those detailed in the following manuscript:D.W. Thompson-Bagshaw, R.D. Quarrington, P.A. Cripton, C.F. Jones, Cervical spine posture, but not head-end motion constraints, governs the kinematic and kinetic response in sub-injurious axial impacts. Journal of the Mechanical Behavior of Biomedical Materials, 2025, 107321, doi.org/10.1016/j.jmbbm.2025.107321.Please cite this manuscript and this dataset, when using the data.
DOI: 10.5281/zenodo.18028937
title: XORIJIY TIL O'QITUVCHILARNING INNОVАTSIОN KОMPЕTЕNTLIGINI SHАKLLАNTIRISHNING MOHIYATI
DOI: 10.5281/zenodo.18028938
title: XORIJIY TIL O'QITUVCHILARNING INNОVАTSIОN KОMPЕTЕNTLIGINI SHАKLLАNTIRISHNING MOHIYATI
DOI: 10.15468/dl.euzehr
title: Occurrence Download

description: A dataset containing 226022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetrao urogallus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 226022 records from 290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063602-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfv8m4
title: Occurrence Download

description: A dataset containing 16430113 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((165.94044 -45.99941,167.55043 -47.63487,170.34335 -46.61733,173.75429 -43.3178,174.5674 -42.96329,174.5983 -42.26064,178.18124 -40.21151,178.75404 -37.51711,176.94429 -37.05756,175.63032 -35.82188,173.53226 -34.15383,172.45352 -34.28817,174.30796 -37.83801,172.08175 -40.53164,169.9919 -42.58932,166.97373 -44.58945,165.94044 -45.99941))"
 ]
}

 The dataset includes 16430113 records from 1028 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063603-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18419/darus-1103/273
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DOI: 10.18419/darus-1103/292
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