cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10656892
title: Exploring the role of RFX6 in pancreatic islet development using iPSCs

description: Project manager(s): Essam M. Abdelalim (Sidra Medicine, Qatar)

Wild type iPSCs (WT-iPSCs) generated and fully characterized in our laboratory were used for RFX6 knockout iPSCs (RFX6 KO iPSCs) generation. WT-iPSCs and RFX6 KO iPSCs were differentiated into pancreatic islet cells to uncover RFX6’s role during pancreatic islet development. The dataset represents RNA-seq data generated from pancreatic progenitors (PPs) and endocrine progenitors (EPs) derived from WT-iPSCs and RFX6 KO iPSCs. 

The file name is: Sample name _overall sample number_read direction_001 where:

- PPs-WT-Rep1: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 1.

- PPs-WT-Rep2: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 2.

- PPs-WT-Rep3: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 3.

- PPs-KO-Rep1: pancreatic progenitors (PPs) derived from RFX6 KO iPSCs, replicate 1.

- PPs-KO-Rep2: pancreatic progenitors (PPs) derived from RFX6 KO iPSCs, replicate 2.

- PPs-KO-Rep3: pancreatic progenitors (PPs) derived from RFX6 KO iPSCs, replicate 3.

- EPs-WT-Rep1: endocrine progenitors (EPs) derived from WT-iPSCs, replicate 1.

- EPs-WT-Rep2: endocrine progenitors (EPs) derived from WT-iPSCs, replicate 2.

- PPs-KO-Rep1: endocrine progenitors (EPs) derived from RFX6 KO iPSCs, replicate 1.

- PPs-KO-Rep2: endocrine progenitors (EPs) derived from RFX6 KO iPSCs, replicate 2.

- Read direction: R1 (Forward), R2 (Reverse).
DOI: 10.15468/brhady
title: Soil nematodes of coniferous forests along gradient of air pollution (Komi Republic)

description: Information of the number of individuals of nematode genera in soil samples collected in pine and spruce forests along a gradient of palp and paper industry (Komi Republic, Syktyvkar) is given.
DOI: 10.15468/ygwbgb
title: Das Biospeläologische Kataster von Hessen - Die Fauna der Höhlen, künstlichen Hohlräume und Quellen

description: This dataset is part of Edaphobase. Edaphobase is a data warehouse that collects information from literature, museum collections and research data about the distribution and ecology of soil organisms (earthworms, potworms, nematodes, springtails, proturans, diplurans, moss/beetle mites, gamasina mites, centipedes, millipedes, woodlice, soil fungi and soil prokaryotes). You can discover the whole Edaphobase data here: https://portal.edaphobase.org/ To get more information about Edaphobase please go to: https://edaphobase.org/ Data ownersStefan Zaenker Discover the datahttps://portal.edaphobase.org/?qxenv:action:gbif&qxenv:sources:30089
DOI: 10.15468/96fy2a
title: Massane meiofauna records

description: We report the results of a faunistic survey focused on freshwater and limno-terrestrial meiofauna to improve biodiversity knowledge in a protected area in the Eastern part of the French Pyrénées: the Massane Forest Reserve (336 Ha). The survey provided 1192 occurrence records from 315 taxa (most resolved at species-level), uploaded as a shared online dataset.<br>
The dataset of freshwater and limno-terrestrial meiofauna from the Massane Reserve and surrounding areas was built starting from 150 samples collected during several survey in the area between 2021 and 2023, covering diverse organismic groups from different habitats.
The highest number of occurrences and distinguishable morpho-taxa belong to the group Nematoda (775 occurrences, 172 taxa), followed by Rotifera (219 occurrences, 67 taxa), Platyhelminthes (85 occurrences, 32 taxa), Tardigrada (69 occurrences, 25 taxa), and Gastrotricha (39 occurrences, 19 taxa). A diversity of meiofaunal organisms was found, in large numbers, in all the samples screened: from stream biofilms and sediments, to forest floor soils, mosses, and litter, to a broad range of tree-related micro-habitats associated with beech-like epixylic mosses and lichens, tree cavities, woodpecker breeding holes, bark pockets and fruiting bodies of saproxylic fungi.<br>
The dataset includes 1192 occurence records of 315 distinct taxa of meiofauna collected at the Massane Forest Reserve: 219 taxa have been diagnosed at species-level, 75 at genus-level and 21 at family-level. Of the taxa reported in the current dataset, 41 (13%) are Rotifera Bdelloidea (157 occurrences), 26 (8%) are Rotifera Monogononta (62 occurrences), 19 (6%) are Gastrotricha (39 occurrences), 25 (7.9%) are Tardigrada (69 occurrences), 172 (54%) are Nematoda (775 occurrences) and 32 (10%) are Platyhelminthes (85 occurences).<br>
The data were structured based on the Darwin Core standard (Wieczorek et al., 2012).
This survey makes the Massane forest one of the few protected areas of the world with a taxa-inclusive meiofauna dataset, which could serve as a standard inventory to further consider micro-invertebrates in forest conservation.
DOI: 10.15468/kgmkvo
title: Nematodes from Finse

description: Nematodes from Finse were sampled by soil cores with a 10 cm diameter in august 2019 along a elevation gradient described in the following publication; Roos et al 2019. Contrasting drivers of community‐level trait variation for vascular plants, lichens and bryophytes across an elevational gradient, Functional Ecology (https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/1365-2435.13454). The quantity is abundance, number of individuals per 80 sq cm. The nematodes were extracted and identified by Marek Renco. The data is collected as part of the project FuncFinse.
DOI: 10.15468/wkce5u
title: Projet éolien de Mouterre-Silly et Chalais - Relevés Entomofaune – auddicé – Projet PE à Mouterre-Silly

description: Suivis de l'Entomofaune (Rhopalocères, Odonates, Orthoptères, Coléoptères saproxyliques) ; Prospection des milieux favorables propres à chaque groupe (observation à vue, par capture, écoute des stridulations, indices de présence) 3 sorties réalisées par auddicé (27-06-2017, 19-09-2018, 14-03-2019)
DOI: 10.15468/c4j37x
title: Die Nematodenfauna eines Buchenwaldbodens

description: This dataset is part of Edaphobase. Edaphobase is a data warehouse that collects information from literature, museum collections and research data about the distribution and ecology of soil organisms (earthworms, potworms, nematodes, springtails, proturans, diplurans, moss/beetle mites, gamasina mites, centipedes, millipedes, woodlice, soil fungi and soil prokaryotes). You can discover the whole Edaphobase data here: https://portal.edaphobase.org/ To get more information about Edaphobase please go to: https://edaphobase.org/ Data ownersHerbert Zell Discover the datahttps://portal.edaphobase.org/?qxenv:action:gbif&qxenv:sources:168
DOI: 10.15468/syfv6f
title: Nematode communities of northern temperate grassland ecosystems

description: This dataset is part of Edaphobase. Edaphobase is a data warehouse that collects information from literature, museum collections and research data about the distribution and ecology of soil organisms (earthworms, potworms, nematodes, springtails, proturans, diplurans, moss/beetle mites, gamasina mites, centipedes, millipedes, woodlice, soil fungi and soil prokaryotes). You can discover the whole Edaphobase data here: https://portal.edaphobase.org/ To get more information about Edaphobase please go to: https://edaphobase.org/ Data ownersAndrew Harrison, Björn Sohlenius, Ch. Diedrich, Dieter Sturhan, G. Thoenissen, Gabriele Broll, George P. Stamou, Gregor W. Yeates, Harm Keidel, Hülya Dogan, Ilian L. Iliev, Juliana Popovici, Kerstin Schmidtfrerick, Klemens Ekschmitt, Liliane Ruess, Marina Bongers, Peter I. Nagy, Roger Cook, Ron G.M. de Goede, Sven Boström, Tom Bongers, Zhenya I. Ilieva Discover the datahttps://portal.edaphobase.org/?qxenv:action:gbif&qxenv:sources:171
DOI: 10.6084/m9.figshare.25107722
title: Additional file 1 of The role of adenocarcinoma subtypes and immunohistochemistry in predicting lymph node metastasis in early invasive lung adenocarcinoma

description: Additional file 1.
DOI: 10.15468/6ktwzu
title: Benthic macrofauna of the Ericeira coast (central Portugal) collected in May 2001

description: The dataset provides a quantitative list of the macrozoobenthic taxa collected in the infra and circalittoral sandy bottom off Ericeira (central Portugal) in May 2001. The fauna was identified to species or family level. The aim was to characterize the macrozoobenthic composition of sandy sediments potentially suitable for beach nourishment, in order to assess the environmental impact of the dredging operations on the benthic communities. The increasing erosion along the Portuguese coast led to the definition of priority areas for beach nourishment. In order to assess the impact of the dredging operations on the benthic communities off Ericeira (a potential area for sand extraction) IPMA was appointed by the National Institute of Water (INAG) to carry out a sampling survey in the infralittoral and upper circalittoral zones (10 to 50 m depth) in May 2001. The sampling gear was a 0,1 m2 Smith-McIntyre grab. Sampling was performed by bathymetry level (10, 20, 40 and 50 m) along three transects perpendicular to the coast (distance between each 2 transects: 1/4 NM). Two grab samples for abiotic and biotic characterisation respectively were collected in each of the 15 sampling sites. The macrozoobenthos was identified to species or family level and quantified. Addionally, sediment grain size distribution and organic matter content were determined.
DOI: 10.6084/m9.figshare.25107722.v1
title: Additional file 1 of The role of adenocarcinoma subtypes and immunohistochemistry in predicting lymph node metastasis in early invasive lung adenocarcinoma

description: Additional file 1.
DOI: 10.15468/27pf8q
title: RNF | Habitats benthiques intertidaux, volet Taxons, des espaces protégés de la LPO France et de l'OFB - RNF Benthos - Relevés taxonomiques | RNN Lilleau-des-Niges

description: Relevés taxonomiques du protocole Habitats Benthiques Intertidaux RNF sur la Réserve Naturelle nationale de Lilleau-des-Niges.
DOI: 10.15468/gemfv4
title: Beach Meiofauna Workshops by Naturalis 2022 and 2023

description: Occurrence dataset for 775 beach meiofauna specimens collected during the beach meiofauna taxonomy and DNA barcoding workshops at Naturalis Biodiversity Center in May/June 2022 and July/August 2023.
DOI: 10.15468/j7ezgn
title: Inventaire général de la biodiversité du domaine du Bois de Bouis (IGB/ATBI) - Inventaire général de la biodiversité (IGB/ATBI) Domaine Bois de Bouis - Données nématodes 2018-2019

description: Ce jeu de données a été acquis dans le cadre du partenariat entre la Fondation d’Entreprise du Golf de Vidauban pour l’Environnement (FEGVE) et PatriNat (MNHN - OFB - CNRS) dans une logique d'Inventaire général de la biodiversité (IGB/ATBI). Le domaine du Bois de Bouis est une propriété privée de 870 ha au cœur de la Plaine des Maures dans la commune de Vidauban dans le département du Var (83). Le présent jeu de données contient des données de nématodes acquises entre 2018 et 2019.
DOI: 10.15468/v45tya
title: Particular records of helminths from common species of herpetofauna of Ukraine

description: The dataset consists of registrations of various species of helminths inhabiting bodies of representatives of common herpetofauna species of Ukraine. The dataset is a part of the project "Creating of genetic base of helminths from common species of amphibians and reptiles from the territory of Ukraine" № 29/02-2022(4) funded by National Academy of Sciences of Ukraine aimed on support of young scientists.
DOI: 10.15468/u484h9
title: Macrozoobenthos of marine waters in mainland Portugal collected in March and September 2010

description: A macrozoobenthos species list is provided, based on datasets originated from infra and circalittoral soft sediment samples (4 to 120 m depth) collected in the marine waters from north to south of mainland Portugal. Species composition, density and wet weight biomass are provided. The data were collected in the framework of the of the EEMA Programme, whose aim was the Ecological Assessment of Water Masses in mainland Portugal. The samples were collected in triplicate in georeferenced sites with a 0.1 m2 Smith-McIntyre grab, in March and September 2010. In the laboratory, the macrofauna was identified to species level. Species density and wet weight biomass are provided. Sediment grain size distribution and organic matter content were also determined per sampling site. This work was carried out in the framework of the EEMA Programme for the assessement of the Ecological State of Marine Waters in mainland Portugal.
DOI: 10.6084/m9.figshare.23566836.v1
title: MARINE PROTECTED AREAS PROMOTE STABILITY OF REEF FISH COMMUNITIES UNDER CLIMATE WARMING

description: Data to reproduce the results in Benedetti-Cecchi et al. "MARINE PROTECTED AREAS PROMOTE STABILITY OF REEF FISH COMMUNITIES UNDER CLIMATE WARMING", including fish abundance, fish traits, marine heatwave statistics and distance from human settlements.

of fish abundance,
DOI: 10.15468/k5djvr
title: Records of parasites of domestic animals in Ukraine (according to the State Service of Ukraine for Food Safety and Consumer Protection)

description: The dataset includes a list of documented cases of outbreaks of parasitic diseases in domestic animals. All information about the discovered facts of infection and taxonomic affiliation were established and documented by specialists of the regional divisions of The State Service of Ukraine for Food Safety and Consumer Protection.
DOI: 10.6084/m9.figshare.23566836
title: MARINE PROTECTED AREAS PROMOTE STABILITY OF REEF FISH COMMUNITIES UNDER CLIMATE WARMING

description: Data to reproduce the results in Benedetti-Cecchi et al. "MARINE PROTECTED AREAS PROMOTE STABILITY OF REEF FISH COMMUNITIES UNDER CLIMATE WARMING", including fish abundance, fish traits, marine heatwave statistics and distance from human settlements.

of fish abundance,
DOI: 10.15468/gt7pdk
title: Free-living soil nematode species (Nematoda) prioritized for the digitization in the collection of the State Museum of Natural History of the NAS of Ukraine

description: This dataset is created and maintained by Dr. Andrij Susulovsky from the State Museum of Natural History of the NAS of Ukraine and Dr. Solomia Susulovska from the Zoological Museum of Ivan Franko National University of Lviv. This dataset comprises the available data on the distribution of 18 rare species of free-living soil nematodes from the nematological collection of the SMNH NASU in different regions of Ukraine and a few other countries (Sri Lanka, Israel). It contains the data on the type and other localities of six nematode species described from the territory of Ukraine. This dataset is created in frames of the project «Digitalization of natural collections that suffered damage as a result of hostilities and related factors: development of protocols and implementation on the basis of the State Natural History Museum of the NAS of Ukraine»
DOI: 10.15468/5vr5pg
title: Nematodes of spruce forests at the Lyalsky test area in the European part of Russia (Komi Republic)

description: The dataset furnishes information on soil nematodes inhabiting various types of spruce forests situated in the Lyalsky test site of the middle taiga as part of the CARBON RITM project.
DOI: 10.6084/m9.figshare.23675031.v1
title: Cryo-EM structure of a cell-free synthesized human histamine 2 receptor/ Gs complex in nanodisc environment

description: We describe the cryo-electron microscopy structure of the human histamine 2 receptor (H2R) in an active conformation with bound histamine and in complex with Gs heterotrimeric protein at an overall resolution of 3.4 Å. The complex was generated by cotranslational insertion into preformed nanodisc membranes using cell-free synthesis in E. coli lysates. It is the first structure obtained by this detergent-free strategy and the first GPCR/Gs complex structure in lipid environment. Structural comparison with the inactive conformation of H2R and the inactive and Gq-coupled active state of H1R together with structure-guided functional experiments reveal molecular insights into the specificity of ligand binding and G protein coupling for this receptor family. We demonstrate lipid-modulated folding of cell-free synthesized H2R, its agonist-dependent internalization and its interaction with endogenously synthesized H1R and H2R in HEK293 cells by applying a recently developed nanotransfer technique.
DOI: 10.6084/m9.figshare.23675031
title: Cryo-EM structure of a cell-free synthesized human histamine 2 receptor/ Gs complex in nanodisc environment

description: We describe the cryo-electron microscopy structure of the human histamine 2 receptor (H2R) in an active conformation with bound histamine and in complex with Gs heterotrimeric protein at an overall resolution of 3.4 Å. The complex was generated by cotranslational insertion into preformed nanodisc membranes using cell-free synthesis in E. coli lysates. It is the first structure obtained by this detergent-free strategy and the first GPCR/Gs complex structure in lipid environment. Structural comparison with the inactive conformation of H2R and the inactive and Gq-coupled active state of H1R together with structure-guided functional experiments reveal molecular insights into the specificity of ligand binding and G protein coupling for this receptor family. We demonstrate lipid-modulated folding of cell-free synthesized H2R, its agonist-dependent internalization and its interaction with endogenously synthesized H1R and H2R in HEK293 cells by applying a recently developed nanotransfer technique.
DOI: 10.15468/fsqr4y
title: Parc photovoltaïque au sol du Beucher - Relevés Entomofaune - auddicé - Projet solaire du Beucher à St Mars la Brière

description: Suivis de l'Entomofaune (Rhopalocères, Odonates, Orthoptères, Coléoptères saproxyliques) réalisés par auddicé sur la ZIP - projet solaire du Beucher à St Mars la Brière
DOI: 10.15468/xrzh53
title: Relevés Entomofaune – Auddicé – Projet éolien de Saint-Genou

description: Taxons étudiés : Rhopalocères, Odonates, Orthoptères, Coléoptères saproxyliques. Prospection des milieux favorables propres à chaque groupe (observation à vue, par capture, écoute des stridulations, indices de présence) 4 sorties réalisées par auddicé (24/09/2020, 08/03/2021, 28/06/2021, 29/06/2021)
DOI: 10.15468/42exfg
title: Records of macrozoobenthos organisms in the Ukrainian part of the Danube delta during 2007-2021

description: The database includes 4724 records of 355 species of benthic invertebrates mostly belonging to phylums Annelida, Arthropoda and Mollusca. The database includes 528 sampling events held in period 2007-2021 in Ukrainian part of Danube delta. Most of the records were carried out on the territory of the Danube Biosphere Reserve. The database includes findings of bottom-living and plant-living benthic invertebrates.
DOI: 10.15468/kpbmku
title: Die freilebenden Nematoden von Buchenwäldern mit unterschiedlicher Humusform: Struktur der Gemeinschaften und Funktion in der Rhizosphäre der Krautvegetation

description: This dataset is part of Edaphobase. Edaphobase is a data warehouse that collects information from literature, museum collections and research data about the distribution and ecology of soil organisms (earthworms, potworms, nematodes, springtails, proturans, diplurans, moss/beetle mites, gamasina mites, centipedes, millipedes, woodlice, soil fungi and soil prokaryotes). You can discover the whole Edaphobase data here: https://portal.edaphobase.org/ To get more information about Edaphobase please go to: https://edaphobase.org/ Data ownersJörn Alphei Discover the datahttps://portal.edaphobase.org/?qxenv:action:gbif&qxenv:sources:161
DOI: 10.15468/wfu69d
title: Die Nematodenfauna eines Fichtenforstes

description: This dataset is part of Edaphobase. Edaphobase is a data warehouse that collects information from literature, museum collections and research data about the distribution and ecology of soil organisms (earthworms, potworms, nematodes, springtails, proturans, diplurans, moss/beetle mites, gamasina mites, centipedes, millipedes, woodlice, soil fungi and soil prokaryotes). You can discover the whole Edaphobase data here: https://portal.edaphobase.org/ To get more information about Edaphobase please go to: https://edaphobase.org/ Data ownersLiliane Ratajczak Discover the datahttps://portal.edaphobase.org/?qxenv:action:gbif&qxenv:sources:167
DOI: 10.15468/pnxpkz
title: Untersuchungen über die Nematodenfauna mitteldeutscher Waldböden.

description: This dataset is part of Edaphobase. Edaphobase is a data warehouse that collects information from literature, museum collections and research data about the distribution and ecology of soil organisms (earthworms, potworms, nematodes, springtails, proturans, diplurans, moss/beetle mites, gamasina mites, centipedes, millipedes, woodlice, soil fungi and soil prokaryotes). You can discover the whole Edaphobase data here: https://portal.edaphobase.org/ To get more information about Edaphobase please go to: https://edaphobase.org/ Data ownersWilfried Bassus Discover the datahttps://portal.edaphobase.org/?qxenv:action:gbif&qxenv:sources:94328
DOI: 10.15468/2z8qtz
title: Sukzession von Nematoden in Buchen-, Fichten und Mischstreu - Effekte von Baumart und Streuqualität

description: This dataset is part of Edaphobase. Edaphobase is a data warehouse that collects information from literature, museum collections and research data about the distribution and ecology of soil organisms (earthworms, potworms, nematodes, springtails, proturans, diplurans, moss/beetle mites, gamasina mites, centipedes, millipedes, woodlice, soil fungi and soil prokaryotes). You can discover the whole Edaphobase data here: https://portal.edaphobase.org/ To get more information about Edaphobase please go to: https://edaphobase.org/ Data ownersBirgit Felgentreu Discover the datahttps://portal.edaphobase.org/?qxenv:action:gbif&qxenv:sources:101087
DOI: 10.15468/gxp27f
title: Meiobenthos, National Monitoring Study 2019, EMBLAS Plus Project, EMBLAS Plus Project

description: Meiobenthos data: species composition, abundance (ind/m2), biomass (mg/m2) collected during the National Monitoring Study (NMS_UA 2019) in the Ukrainian waters (North-Western part of the Black Sea) onboard the Vessel “Auguste Piccard”, (Ukraine) in August-October 2019
DOI: 10.15468/ns2gff
title: RNF | Habitats benthiques intertidaux, volet Taxons, des espaces protégés de la LPO France et de l'OFB - RNF Benthos - Relevés taxonomiques | RNN Marais d'Yves

description: Relevés taxonomiques du protocole Habitats Benthiques Intertidaux RNF sur la Réserve Naturelle nationale du Marais d'Yves.
DOI: 10.6084/m9.figshare.13049162
title: Additional file 1 of Nigella A ameliorates inflammation and intestinal flora imbalance in DSS induced colitis mice

description: Additional file 1. The original results of 16S rDNA sequencing and statistical analysis of flora differences.
DOI: 10.6084/m9.figshare.13049162.v1
title: Additional file 1 of Nigella A ameliorates inflammation and intestinal flora imbalance in DSS induced colitis mice

description: Additional file 1. The original results of 16S rDNA sequencing and statistical analysis of flora differences.
DOI: 10.5281/zenodo.10725804
title: [IO Islamic 1159] يوسف و زليخا

description: Yûsuf-u-Zalîkhâ

This manuscript is now IO Islamic 1594 in the India Office collections.

[metadata: Hermann Ethé, Catalogue of Persian Manuscripts in the Library of the India Office, 2 vols. (Oxford: India Office, 1903): volume 1, number 1159 here with notations and hyperlinks].


1594

Another copy of the same.

Beginning as in the preceding copy.

No date. Ff. 193a-195b are left blank.

No. 1159, margin-column, ff. 179b-348, ll. 28-40; (14-20 baits), written by different hands in irregular Nasta’lîḳ, which sometimes resembles Shikasta.