cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16899800
title: Atmospheric turbulence estimation from high vertical-resolution radiosonde data (HVRRD) using the minimum Richardson number. Part 1.

description: This is the atmospheric turbulnece estimation from high vertical-resolution radiosonde data (HVRRD) usig the minimum Richardson number. 

The data are provided in NetCDF format and they are archived in six-month intervals as tar.gz files, due to their large volume.
DOI: 10.15468/dl.8rm9r2
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xenodermichthys copei (Gill, 1884)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-9.5482 4.7175,-9.0352 4.4397,-9.0352 10.8496,-16.709 10.8496,-16.3297 10.5455,-15.1301 10.2973,-14.7679 9.8172,-14.3248 9.5834,-14.2456 9.1632,-13.8032 8.9309,-13.7341 8.0101,-13.3252 7.2036,-11.9532 6.6399,-11.0468 5.863,-10.545 5.6439,-9.5482 4.7175))"
 ]
}

 The dataset includes 37 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010568-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15600235
title: Dataset
DOI: 10.5281/zenodo.15600236
title: Dataset
DOI: 10.15468/dl.kqd5qx
title: Occurrence Download

description: A dataset containing 66816 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Achyranthes aspera L., Asplenium longissimum Blume, Asplenium macrophyllum Sw., Asplenium nidus L., Boerhavia repens L., Canavalia cathartica Thouars, Dactyloctenium ctenoides (Steud.) Bosser, Euphorbia stoddartii Fosberg, Ipomoea violacea L., Lagrezia micrantha (Baker) Schinz, Lepturus repens (G.Forst.) R.Br., Portulaca mauritiensis Poelln., Pteris tripartita Sw., Scaevola taccada (Gaertn.) Roxb., Sida pusilla Cav., Stenotaphrum dimidiatum (L.) Brongn., Stenotaphrum micranthum (Desv.) C.E.Hubb., Triumfetta procumbens G.Forst.)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 66816 records from 797 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021973-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5hp89
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Palicourea aurantiibractea (C.M.Taylor) Borhidi"
 ]
}

 The dataset includes 71 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021926-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.4uj6bf8u
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1141 records)
DOI: 10.1594/pangaea.981204
title: Annual total rainfall amount at Gobabeb, Namibia

description: A six-decade-long dataset of the monthly and annual rainfall amount from 1962 to 2023 at Gobabeb, Namibia was compiled based on literature-derived dataset, public-available meteorological observations, and our measurement records. Monthly rainfall data at Gobabeb from September 1962 to December 2002 is available at Henschel and Seely (2008, doi:10.1016/j.atmosres.2007.11.015), and daily rainfall data during 2003-2014 was recordedavailable at the Gobabeb − Namib Research Institute. The daily rainfall data from October 2014 to December 2023 is available via https://sasscalweathernet.org/w_datarequest_we.php?MIsoCode=NA&MMCS=0#StationAnchor.
DOI: 10.1594/pangaea.57988
title: Alkenones and sea surface temperature of sediment core GeoB1401-4
DOI: 10.1594/pangaea.981205
title: Monthly total rainfall amount at Gobabeb, Namibia

description: A six-decade-long dataset of the monthly and annual rainfall amount from 1962 to 2023 at Gobabeb, Namibia was compiled based on literature-derived dataset, public-available meteorological observations, and our measurement records. Monthly rainfall data at Gobabeb from September 1962 to December 2002 is available at Henschel and Seely (2008, doi:10.1016/j.atmosres.2007.11.015), and daily rainfall data during 2003-2014 was recordedavailable at the Gobabeb − Namib Research Institute. The daily rainfall data from October 2014 to December 2023 is available via https://sasscalweathernet.org/w_datarequest_we.php?MIsoCode=NA&MMCS=0#StationAnchor.
DOI: 10.1594/pangaea.982326
title: Composite oxygen isotope record of stalagmite BA14-1 and BA18-4 from Básura cave, northern Italy
DOI: 10.15468/dl.qfmatg
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "StateProvince is 西藏",
 "TaxonKey is Cypripedium tibeticum"
 ]
}

 The dataset includes 21 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050011-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.847v5x
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((5.2927 51.69291,5.11622 51.55939,5.13001 51.42891,5.37267 51.38763,5.50503 51.49934,5.2927 51.69291))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Squalius cephalus"
 ]
}

 The dataset includes 255 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050012-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21954/ou.rd.29994589
title: REDEFINE (UK): Interview note with the UK representative P24 of a Chinese trade promotion agency

description: This document forms part of the REDEFINE research project (ERC Grant No. 885475), funded by the European Research Council. REDEFINE focuses on the dynamics and effects of China’s large-scale infrastructure investments in Europe, with a focus on Germany, Greece, Hungary, and the UK. Through multi-sited fieldwork and interdisciplinary analysis, the project seeks to understand the evolving relations between China and Europe and to assess what this means for politics, economic growth and development more broadly.This anonymised interview note presents a semi-structured interview conducted with the UK representative P24 of a Chinese trade promotion agency. The conversation contributes to REDEFINE’s case study of ABP’s investment in Royal Albert Dock. All identifying details have been removed, and informed consent for participation and data use was obtained.
DOI: 10.21954/ou.rd.29994589.v1
title: REDEFINE (UK): Interview note with the UK representative P24 of a Chinese trade promotion agency

description: This document forms part of the REDEFINE research project (ERC Grant No. 885475), funded by the European Research Council. REDEFINE focuses on the dynamics and effects of China’s large-scale infrastructure investments in Europe, with a focus on Germany, Greece, Hungary, and the UK. Through multi-sited fieldwork and interdisciplinary analysis, the project seeks to understand the evolving relations between China and Europe and to assess what this means for politics, economic growth and development more broadly.This anonymised interview note presents a semi-structured interview conducted with the UK representative P24 of a Chinese trade promotion agency. The conversation contributes to REDEFINE’s case study of ABP’s investment in Royal Albert Dock. All identifying details have been removed, and informed consent for participation and data use was obtained.
DOI: 10.15468/dl.cnmqsr
title: Occurrence Download

description: A dataset containing 1384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation)",
 "Country is South Africa",
 "TaxonKey is Leucosidea sericea",
 "Year 2013-2025"
 ]
}

 The dataset includes 1384 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050013-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wq3skx
title: Occurrence Download

description: A dataset containing 3118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.85242 51.49221,5.42455 51.49221,5.42455 51.71733,4.85242 51.71733,4.85242 51.49221))",
 "HasGeospatialIssue is false",
 "TaxonKey is Ichneumonidae",
 "Year 2021-2024"
 ]
}

 The dataset includes 3118 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022392-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2p6fst
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018805-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mb2457
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Under-ice Amphipods in the Greenland Sea and Fram Strait (Arctic): Environmental Controls and Seasonal Patterns Below the Pack Ice"
 ]
}

 The dataset includes 66 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018806-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92s8vb
title: Occurrence Download

description: A dataset containing 473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong, Macao)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudosasa Makino ex Nakai",
 "Year 1000-2025"
 ]
}

 The dataset includes 473 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018807-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxckq4
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018808-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fh53jp
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong, Macao)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oligostachyum Z.P.Wang & G.H.Ye",
 "Year 1000-2025"
 ]
}

 The dataset includes 171 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018809-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15472/u0wb5w
title: Colección Taxonómica Central del Museo Entomológico UNAB, familia Cicindelidae

description: El Museo Entomológico UNAB contiene cerca de 180.000 especímenes, con las siguientes características de conservación: 153.000 montados en alfiler y almacenados en 980 gavetas de madera tipo Cornell, ubicadas en seis paneles de compactadores y 395 cajas misceláneas en estanterías; 10.430 montadas en láminas: Coccomorpha (6.600 láminas), Collembola (1.700), Aphidomorpha (1400), Aleyrodomorpha (500), Thysanoptera (90), Acari (90), Psyllomorpha (50); 18.400 entre larvas y adultos, envasados en 4.600 frascos con alcohol, y 96 especímenes tipo montados en alfiler, que representan 46 especies. Aproximadamente, 20.000 especímenes se encuentran catalogados en la base digital de la Colección Taxonómica Central (CTC) del Museo UNAB, 17.000 de los cuales se encuentran identificados por especialistas, a nivel de género o especie. Dichas identificaciones representan un total de 4.000 especies, en 150 familias y 19 órdenes de insectos; así como siete especies de Acari en dos familias.
description: En el presente recurso se documentan registros biológicos correspondientes a representantes de la familia Cicindelidae
description: Los especímenes de Coleoptera de las colecciones del Museo tienen fecha de recolección desde 1950 hasta la actualidad y son parte de recolectas y proyectos dirigidos en los agroecosistemas de Colombia. Todos los especímenes asociados a los registros se encuentran actualmente depositados en el museo entomológico UNAB, de la Facultad de Ciencias Agrarias de la Universidad Nacional de Colombia, sede Bogotá.
DOI: 10.15468/dl.yuyw8n
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018810-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15562248
title: Structures, MD inputs, couplings and energies for ErCry4 and ClCry4

description: This dataset, related to the analyses of the electron transfer (ET) chain in birds' cryptochrome 4 (Cry4), contains the following files.



The structures, modelled with Alphafold3, of ClCry4 and ErCry4 (fold_clcry4.cif and fold_ercry4.cif).

The input files of the MD productions carried with Amber22 on ClCry4 and ErCry4 (MD_prods.tar.gz).

The SCF energies (Hartree) obtained with QM/AMOEBA calculations on the excited and ground states of the proteins. In particular:



ER_energies.tar.gz and CL_energies.tar.gz contain the energies computed on ~ 500 frames from the second halves of ErCry4's and ClCry4's trajectories, respectively. The variability in the number of frames stems from the fact that not all ΔSCF calculations achieved convergence.

Xu_energies.tar.gz contains the energies computed on ~ 300 frames from the second halves of ErCry4's trajectories simulated in the work of Xu et al. [Xu J, et al. Nature. 594(7864):535-540 (2021)]. The frames are exactly 300 for the GS trajectory and 270 for the others.



The electronic couplings (eV) between HOMO orbitals of nearby residues in Cry4's chromophoric chain. For each frame of the second halves of the MD trajectories, the coupling is reported, unless the corresponding frame achieved no convergence in ΔSCF calculations (or achieved convergence to the wrong state). In particular, Couplings.tar.gz contains the couplings computed on the ErCry4 and ClCry4's trajectories simulated by the authors, while Xu_couplings.tar.gz contains the couplings computed on 250 frames from the trajectories of ErCry4 simulated by Xu et al. [Xu J, et al. Nature. 594(7864):535-540 (2021)].
DOI: 10.5281/zenodo.15562247
title: Structures, MD inputs, couplings and energies for ErCry4 and ClCry4

description: This dataset, related to the analyses of the electron transfer (ET) chain in birds' cryptochrome 4 (Cry4), contains the following files.



The structures, modelled with Alphafold3, of ClCry4 and ErCry4 (fold_clcry4.cif and fold_ercry4.cif).

The input files of the MD productions carried with Amber22 on ClCry4 and ErCry4 (MD_prods.tar.gz).

The SCF energies (Hartree) obtained with QM/AMOEBA calculations on the excited and ground states of the proteins. In particular:



ER_energies.tar.gz and CL_energies.tar.gz contain the energies computed on ~ 500 frames from the second halves of ErCry4's and ClCry4's trajectories, respectively. The variability in the number of frames stems from the fact that not all ΔSCF calculations achieved convergence.

Xu_energies.tar.gz contains the energies computed on ~ 300 frames from the second halves of ErCry4's trajectories simulated in the work of Xu et al. [Xu J, et al. Nature. 594(7864):535-540 (2021)]. The frames are exactly 300 for the GS trajectory and 270 for the others.



The electronic couplings (eV) between HOMO orbitals of nearby residues in Cry4's chromophoric chain. For each frame of the second halves of the MD trajectories, the coupling is reported, unless the corresponding frame achieved no convergence in ΔSCF calculations (or achieved convergence to the wrong state). In particular, Couplings.tar.gz contains the couplings computed on the ErCry4 and ClCry4's trajectories simulated by the authors, while Xu_couplings.tar.gz contains the couplings computed on 250 frames from the trajectories of ErCry4 simulated by Xu et al. [Xu J, et al. Nature. 594(7864):535-540 (2021)].
DOI: 10.5281/zenodo.15588235
title: Dataset - Implementation of didactic strategies for assurance of learning with students at risk of academic failure in general chemistry
DOI: 10.5281/zenodo.15588236
title: Dataset - Implementation of didactic strategies for assurance of learning with students at risk of academic failure in general chemistry
DOI: 10.15468/dl.wzekmc
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong, Macao)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acidosasa C.D.Chu & C.S.Chao",
 "Year 1000-2025"
 ]
}

 The dataset includes 93 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018812-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56xnbw
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018811-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6xbwe
title: Occurrence Download

description: A dataset containing 826 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Beilschmiedia mannii"
 ]
}

 The dataset includes 826 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025651-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3c2da
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alpheus macrochirus"
 ]
}

 The dataset includes 51 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025652-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5522/04/28303712
title: Research Data for "Classic Maya Response to Multi-Year Seasonal Droughts in Northwest Yucatán, Mexico"

description: This dataset forms the source data for "Classic Maya Response to Multi-Year Seasonal Droughts in Northwest Yucatán, Mexico", by Daniel H. James <i>et al.</i>, published in Science Advances, 2025. The spreadsheets herein constitute tables S1-S4 in the article text and supplementary information. All data collection methodology is specified in the article.
DOI: 10.5522/04/28303712.v1
title: Research Data for "Classic Maya Response to Multi-Year Seasonal Droughts in Northwest Yucatán, Mexico"

description: This dataset forms the source data for "Classic Maya Response to Multi-Year Seasonal Droughts in Northwest Yucatán, Mexico", by Daniel H. James <i>et al.</i>, published in Science Advances, 2025. The spreadsheets herein constitute tables S1-S4 in the article text and supplementary information. All data collection methodology is specified in the article.
DOI: 10.15468/dl.k6yu2e
title: Occurrence Download

description: A dataset containing 513 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Palicourea hazenii (Standl.) Borhidi"
 ]
}

 The dataset includes 513 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021948-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbjbea
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Catalogue of type specimens deposited in the Herpetology Collection of the Natural History Museum Gustavo Orcés V. at Escuela Politécnica Nacional (Ecuador)"
 ]
}

 The dataset includes 193 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014695-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15572194
title: LeafMachine2 Data: Betulaceae Leaf Outlines and ECT

description: Betulaceae - 991,028 leaves - 129.5 GB: This repository contains HDF5 (.h5) files with leaf morphological data for species in the Betulaceae family. Each file represents a single leaf specimen and contains leaf shape outlines, the 128x128 ECT matrix, and associated metadata.

File Contents

This dataset contains 991,028 leaves from taxa in the family Betulaceae. Some leaves may be partial, predated, broken, or incomplete. Each .h5 file contains the following datasets:



ECT_matrices/ - Euler Characteristic Transform (ECT) matrices capturing topological features of leaf shapes

shapes/shape_0 - Coordinate array (x,y) defining the leaf outline boundary

component_names - Original filename identifier (without extension)

group_labels - Taxonomic classification dictionary containing:



family: Taxonomic family name

genus: Genus classification

genus_species: Binomial species name

fullname: Complete taxonomic identifier




Data Format

Files are organized with standardized naming: [Herbarium]_[ID]_[Family]_[Genus]_[Species]__[LeafID].h5 Shape coordinates are normalized to a unit circle centered at the origin (-0.5 to 0.5 range), vertically oriented.

Uncompressed Size

129.5 GB

Usage

Code for reading, processing, and analyzing these files is available at: https://github.com/Gene-Weaver/LM2-Data-Tools The repository includes functions for extracting data and generating visualizations.

Citation

Please cite the LeafMachine2 paper and this dataset.

Weaver, W. N., & Smith, S. A. (2023). From leaves to labels: Building modular machine learning networks for rapid herbarium specimen analysis with LeafMachine2. Applications in Plant Sciences, 11(5), e11548. https://doi.org/10.1002/aps3.11548