cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5744713
title: Optimizing Within-Distance Queries by Approximating Shapes with Maximal Bounded Boxes - Datasets

description: Csv and sql files for the underlying data.<br> Figure 9: Calculating the distance between various number and type of shapes, i.e. from polygons, rotated and axis aligned rectangles, to points, polygons, rotated and axis aligned rectangles.<br> Table 1: Calculating distance between shapes of various complexity, i.e. points, lines, quadrilaterals, hexagons, dodecagons, icosagons, pentacontagons.<br> Table 2: Comparing the ordering of the shapes when distance operation is calculated, (a) from polygons to rectangles, (b) from rectangles to polygons.<br> Table 5 & 6: Within-distance and distance queries between (a) actual polygons, (b) their bounded rectangles, (c) actual polygons and points, (d) their bounded rectangles and points.
DOI: 10.5281/zenodo.5788771
title: Boland et al supplementary data file 1 - Amiodarone

description: Supplementary Data File 1 containing differentially regulated genes of control treated or Amiodarone treated zebrafish larvae.
DOI: 10.5281/zenodo.5788770
title: Boland et al supplementary data file 1 - Amiodarone

description: Supplementary Data File 1 containing differentially regulated genes of control treated or Amiodarone treated zebrafish larvae.
DOI: 10.5517/ccdc.csd.cc286k9c
title: CCDC 2091672: Experimental Crystal Structure Determination

description: Related Article: Beatrice Battistella, Katrin Warm, Beatrice Cula, Bernd Lu, Peter Hildebrandt, Uwe Kuhlmann, Holger Dau, Stefan Mebs, Kallol Ray|2021|J.Inorg.Biochem.|227|111668|doi:10.1016/j.jinorgbio.2021.111668
DOI: 10.5517/ccdc.csd.cc28vyz2
title: CCDC 2111285: Experimental Crystal Structure Determination

description: Related Article: Mirjana Antonijević Nikolić, Branka Dražić, Beata Cristóvão, Agata Bartyzel, Barbara Miroslaw, Slađana Tanasković|2021|J.Mol.Struct.|1252|131969|doi:10.1016/j.molstruc.2021.131969
DOI: 10.5517/ccdc.csd.cc28vz04
title: CCDC 2111286: Experimental Crystal Structure Determination

description: Related Article: Mirjana Antonijević Nikolić, Branka Dražić, Beata Cristóvão, Agata Bartyzel, Barbara Miroslaw, Slađana Tanasković|2021|J.Mol.Struct.|1252|131969|doi:10.1016/j.molstruc.2021.131969
DOI: 10.5517/ccdc.csd.cc2915n6
title: CCDC 2116297: Experimental Crystal Structure Determination

description: Related Article: Hong-Song Shi, Shuo-Han Li, Fa-Guang Zhang, Jun-An Ma|2021|Chem.Commun.|57|13744|doi:10.1039/D1CC05890H
DOI: 10.5517/ccdc.csd.cc2915sb
title: CCDC 2116301: Experimental Crystal Structure Determination

description: Related Article: Hong-Song Shi, Shuo-Han Li, Fa-Guang Zhang, Jun-An Ma|2021|Chem.Commun.|57|13744|doi:10.1039/D1CC05890H
DOI: 10.5517/ccdc.csd.cc2915wf
title: CCDC 2116304: Experimental Crystal Structure Determination

description: Related Article: Hong-Song Shi, Shuo-Han Li, Fa-Guang Zhang, Jun-An Ma|2021|Chem.Commun.|57|13744|doi:10.1039/D1CC05890H
DOI: 10.5281/zenodo.5788779
title: Graduation Dataset for Anonymization Data

description: No description provided.
DOI: 10.5281/zenodo.5788778
title: Graduation Dataset for Anonymization Data

description: No description provided.
DOI: 10.23708/rxixm3
title: Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

description: This dataset contains additional supporting information and source code related to the discovery of Xanthomonas-induced small RNAs (xisRNAs) as described in the Related Publication. Deep small RNA (sRNA) sequencing analysis discovered a class of sRNA in rice (Oryza sativa) specifically associated with foliar diseases caused by Xanthomonas oryzae pathovars. A set of 163 xisRNAs loci were distinctively upregulated in response to various bacterial strains at an early stage of infection. Most xisRNA loci overlap with annotated cis-transcripts sequences often encoding protein kinase domain proteins including RLKs and RLCKs. A number of the corresponding rice cis-genes have documented functions in immune signaling and about one third of the xisRNA loci coincide with the coding sequence of a conserved kinase motif. xisRNAs exhibit features of small interfering RNAs and their biosynthesis depend on canonical components OsDCL1 and OsHEN1. Notably xisRNAs production was dependent on the X. oryzae Type III secretion system, a major bacterial virulence factor for host colonization. xisRNA induction possibly mediates post-transcriptional gene silencing but they do not appear to widely suppress cis-genes expression on the basis of mRNA-seq data. Overall, our results identify an unrecognized group of unusual sRNAs with a potential role in plant-microbe interactions. The main entry point for this dataset is the "PHIM_ xisRNA_MS_dataverse_code.html" file that records the code and the output of most secondary analysis computing tasks performed to generate the material relevant to the manuscript on xisRNAs referenced in the Related Publication metadata. Other Files include selected data files that have been used or produced in the course of the analysis workflow.
DOI: 10.15468/25cwv6
title: The first true millipede- 1306 legs long

description: This dataset contains the digitized treatments in Plazi based on the original journal article Marek, Paul E., Buzatto, Bruno A., Shear, William A., Means, Jackson C., Black, Dennis G., Harvey, Mark S., Rodriguez, Juanita (2021): The first true millipede- 1306 legs long. Scientific Reports 11 (23126): 1-11, DOI: 10.1038/s41598-021-02447-0
DOI: 10.34740/kaggle/dsv/2926127
title: Getaberget Subsampled Fracture Network Dataset
DOI: 10.34740/kaggle/dsv/2938356
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.5788815
title: Data Set of Publication - Outcome of Scleral Rupture Primary Management Without Vitrectomy Jakarta Eye Trauma Study

description: This dataset was collected for research purposes. The dataset was about the scleral rupture we found in our teritories
DOI: 10.25829/idiv.3497-f384aa
title: Cumulative growth and stress responses to the 2018–2019 drought in a European floodplain forest: data and code on tree growth and δ13C responses to drought
DOI: 10.25829/idiv.3498-b3z822
title: Cumulative growth and stress responses to the 2018–2019 drought in a European floodplain forest: data and code on soil moisture and sap flux responses to drought
DOI: 10.5281/zenodo.5788803
title: Sample Multi-Modal BIDS dataset (v2.0)

description: This a sample BIDS dataset created for continous integration of the Connectome Mapper 3. This dataset was acquired at the Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne, Switzerland, using a 3T Siemens Prisma MRI scanner. It adopts the sub-/ses- structure and contains one T1w anatomical MRI (MPRAGE), one diffusion MRI (DSI) , and one resting-state functional MRI as well as additional Freesurfer derivatives. It is distributed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. (See https://creativecommons.org/licenses/by/4.0/ for more details) <em>Changes</em> * For testing purposes, scans found in the root <em>sub-01</em> directory have been downsampled to 2x2x2 mm3 (MPRAGE), and to 3x3x3 mm3 (DSI and rfMRI) with the ResampleScalarVolume module of Slicer 4.6.2. A copy of the output produced in the terminal by Slicer has been created in the `code/` directory. * Original data have been placed in <em>sourcedata/</em> in concordance to BIDS.
description: Funding: * SNF Sinergia Grant #170873 (http://p3.snf.ch/Project-170873)
DOI: 10.5281/zenodo.5788951
title: GIS data

description: GIS data
DOI: 10.5281/zenodo.5788950
title: GIS data

description: GIS data
DOI: 10.6084/m9.figshare.15134453
title: Hormones and visual attention to sexual stimuli in older men: an exploratory investigation

description: Testosterone is associated with sexual desire and performance in men, but little is known about cognitive mechanisms underlying this relationship. Even less is known about the influence of estradiol, despite its production from testosterone, and high receptor density in brain regions related to male sexual behavior. We used eye-tracking to compare men’s visual attention to images of fully clothed (i.e. neutral) and minimally clothed (i.e. sexy) models in three groups: androgen-deprived (<i>n</i> = 6) and not androgen-deprived with prostate cancer (<i>n</i> = 11), and healthy controls (<i>n</i> = 7). We also assessed effects of serum testosterone, estradiol, and sex hormone-binding globulin levels. We found no group effect for fixations to sexy compared to neutral images, and no influence of testosterone on either total fixations, or proportion of fixations to sexy images. In contrast, we found that sex hormone binding globulin positively predicted total fixations, and estradiol positively predicted proportion of total fixations on sexy images--regardless of androgen treatment status. Our results suggest that visual attention to sexual stimuli in men may be significantly affected by hormones. This has potential implications for clinical populations that experience sexual side effects, such as prostate cancer patients on androgen deprivation therapy.
DOI: 10.6084/m9.figshare.15134453.v1
title: Hormones and visual attention to sexual stimuli in older men: an exploratory investigation

description: Testosterone is associated with sexual desire and performance in men, but little is known about cognitive mechanisms underlying this relationship. Even less is known about the influence of estradiol, despite its production from testosterone, and high receptor density in brain regions related to male sexual behavior. We used eye-tracking to compare men’s visual attention to images of fully clothed (i.e. neutral) and minimally clothed (i.e. sexy) models in three groups: androgen-deprived (<i>n</i> = 6) and not androgen-deprived with prostate cancer (<i>n</i> = 11), and healthy controls (<i>n</i> = 7). We also assessed effects of serum testosterone, estradiol, and sex hormone-binding globulin levels. We found no group effect for fixations to sexy compared to neutral images, and no influence of testosterone on either total fixations, or proportion of fixations to sexy images. In contrast, we found that sex hormone binding globulin positively predicted total fixations, and estradiol positively predicted proportion of total fixations on sexy images--regardless of androgen treatment status. Our results suggest that visual attention to sexual stimuli in men may be significantly affected by hormones. This has potential implications for clinical populations that experience sexual side effects, such as prostate cancer patients on androgen deprivation therapy.
DOI: 10.12751/g-node.kduj58
title: Similar network compositions, but distinct neural dynamics underlying belief updating in environments with and without explicit outcomes

description: Subject-specific behavioral data, model-based GLM and DCM estimations, jointly with scripts required to run model-based analysis.
description: IsSupplementTo: Fiore and Gu (2021) Similar network compositions, but distinct neural dynamics underlying belief updating in environments with and without explicit outcomes. NeuroImage. (https://doi.org/10.1016/j.neuroimage.2021.118821)
DOI: 10.5281/zenodo.4264538
title: Human embryo time-lapse video dataset - Part 1

description: A human embryo time-lapse video dataset.
DOI: 10.5281/zenodo.5788959
title: Data Intern 71262428

description: Data Intern 71262428.
DOI: 10.5281/zenodo.5788958
title: Data Intern 71262428

description: Data Intern 71262428.
DOI: 10.5281/zenodo.5788813
title: Human embryo time-lapse video dataset - Part 2

description: A human embryo time-lapse video dataset.
DOI: 10.5281/zenodo.5788945
title: (Cot)HoI(thf)2

description: The dataset contains all experimental data for (Cot)HoI(thf)2
DOI: 10.5281/zenodo.5788944
title: (Cot)HoI(thf)2

description: The dataset contains all experimental data for (Cot)HoI(thf)2
DOI: 10.6084/m9.figshare.17262608
title: Raw-data processed in the manuscript "Seasonal timing of vegetative and fruit growth in Viscum album ssp. album on Malus domestica"

description: Methods: Two mistletoe (<i>Viscum album</i> L.) bearing apple trees (<i>Malus domestica </i>Borkh.) were selected in an orchard of the village of Arlesheim (Switzerland). Three vigorous, about 8 to 10 years old, well-shaped, female specimens of <i>V. album</i> ssp. <i>album</i> exposed at the periphery of the host were chosen on each of these two trees for the sampling period of 1996 to 1998. Sampling was repeated from 1999 to 2001 in six other mistletoe specimens of two different trees in the same orchard. Twice a month one twig was harvested from the upper part of each mistletoe plant consisting of three generations of internodes together with the accessory organs (young internodes, young and old leaves, flower shoots and fruit respectively). At the end of the year harvest was restricted again to three generations of internodes, disregarding the 4 years old internodes. All organs of the six twigs harvested twice monthly over the seasons were segregated into their respective classes. The individual organs of each class were united, counted, their fresh weights measured on an analytical balance (Mettler PN1210) immediately after harvesting.<br> For the measurement of fresh weights of the samples from the bi-monthly sampling, all organs of each generation were combined separately for each sampling time. Thereby each value of fresh weight represents the mean over all organs present in the united samples. @font-face {font-family:"Cambria Math"; panose-1:2 4 5 3 5 4 6 3 2 4; mso-font-charset:0; mso-generic-font-family:roman; mso-font-pitch:variable; mso-font-signature:-536870145 1107305727 0 0 415 0;}@font-face {font-family:Calibri; panose-1:2 15 5 2 2 2 4 3 2 4; mso-font-charset:0; mso-generic-font-family:swiss; mso-font-pitch:variable; mso-font-signature:-1610611985 1073750139 0 0 159 0;}p.MsoNormal, li.MsoNormal, div.MsoNormal {mso-style-unhide:no; mso-style-qformat:yes; mso-style-parent:""; margin:0cm; margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:12.0pt; font-family:"Calibri",sans-serif; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:Calibri; mso-fareast-theme-font:minor-latin; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi; mso-fareast-language:EN-US;}.MsoChpDefault {mso-style-type:export-only; mso-default-props:yes; font-family:"Calibri",sans-serif; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:Calibri; mso-fareast-theme-font:minor-latin; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi; mso-fareast-language:EN-US;}div.WordSection1 {page:WordSection1;}
DOI: 10.6084/m9.figshare.17262608.v1
title: Raw-data processed in the manuscript "Seasonal timing of vegetative and fruit growth in Viscum album ssp. album on Malus domestica"

description: Methods: Two mistletoe (<i>Viscum album</i> L.) bearing apple trees (<i>Malus domestica </i>Borkh.) were selected in an orchard of the village of Arlesheim (Switzerland). Three vigorous, about 8 to 10 years old, well-shaped, female specimens of <i>V. album</i> ssp. <i>album</i> exposed at the periphery of the host were chosen on each of these two trees for the sampling period of 1996 to 1998. Sampling was repeated from 1999 to 2001 in six other mistletoe specimens of two different trees in the same orchard. Twice a month one twig was harvested from the upper part of each mistletoe plant consisting of three generations of internodes together with the accessory organs (young internodes, young and old leaves, flower shoots and fruit respectively). At the end of the year harvest was restricted again to three generations of internodes, disregarding the 4 years old internodes. All organs of the six twigs harvested twice monthly over the seasons were segregated into their respective classes. The individual organs of each class were united, counted, their fresh weights measured on an analytical balance (Mettler PN1210) immediately after harvesting.<br> For the measurement of fresh weights of the samples from the bi-monthly sampling, all organs of each generation were combined separately for each sampling time. Thereby each value of fresh weight represents the mean over all organs present in the united samples. @font-face {font-family:"Cambria Math"; panose-1:2 4 5 3 5 4 6 3 2 4; mso-font-charset:0; mso-generic-font-family:roman; mso-font-pitch:variable; mso-font-signature:-536870145 1107305727 0 0 415 0;}@font-face {font-family:Calibri; panose-1:2 15 5 2 2 2 4 3 2 4; mso-font-charset:0; mso-generic-font-family:swiss; mso-font-pitch:variable; mso-font-signature:-1610611985 1073750139 0 0 159 0;}p.MsoNormal, li.MsoNormal, div.MsoNormal {mso-style-unhide:no; mso-style-qformat:yes; mso-style-parent:""; margin:0cm; margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:12.0pt; font-family:"Calibri",sans-serif; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:Calibri; mso-fareast-theme-font:minor-latin; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi; mso-fareast-language:EN-US;}.MsoChpDefault {mso-style-type:export-only; mso-default-props:yes; font-family:"Calibri",sans-serif; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:Calibri; mso-fareast-theme-font:minor-latin; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi; mso-fareast-language:EN-US;}div.WordSection1 {page:WordSection1;}
DOI: 10.5281/zenodo.5176174
title: Conformance Assessment of Architectural Design Decisions on the Mapping of Domain Model Elements to APIs and API Endpoints: Dataset and Code

description: This is the dataset and related code artifact for the article "Conformance Assessment of Architectural Design Decisions on the Mapping of Domain Model Elements to APIs and API Endpoints". <strong>Abstract of the article:</strong> Microservice APIs are often identified and designed based on Domain-Driven Design (DDD). To help in the continuous analysis of mappings of domain model elements to APIs and API endpoints, we aim to automate the assessment of conformance to Architectural Design Decision (ADD) options. The ADDs, their decision options, and relevant decision drivers studied in this paper originate from an empirical study on the mapping of domain model elements to APIs and API endpoints in practice. We propose automated detectors to detect the decision options of the ADDs taken in a given microservice API model, and an assessment scoring scheme based on the empirical knowledge codified in the ADDs. We evaluate our work, by first manually creating a ground truth for 14 cases in a multi-case study, and then comparing the results of our automated detectors to the ground truth for each of the 14 cases. In the cases we were able to identify 86\% of the decision points correctly, and a statistical analysis of our data shows only a negligible effect size for differences to the ground truth.
DOI: 10.5281/zenodo.5176173
title: Conformance Assessment of Architectural Design Decisions on the Mapping of Domain Model Elements to APIs and API Endpoints: Dataset and Code

description: This is the dataset and related code artifact for the article "Conformance Assessment of Architectural Design Decisions on the Mapping of Domain Model Elements to APIs and API Endpoints". <strong>Abstract of the article:</strong> Microservice APIs are often identified and designed based on Domain-Driven Design (DDD). To help in the continuous analysis of mappings of domain model elements to APIs and API endpoints, we aim to automate the assessment of conformance to Architectural Design Decision (ADD) options. The ADDs, their decision options, and relevant decision drivers studied in this paper originate from an empirical study on the mapping of domain model elements to APIs and API endpoints in practice. We propose automated detectors to detect the decision options of the ADDs taken in a given microservice API model, and an assessment scoring scheme based on the empirical knowledge codified in the ADDs. We evaluate our work, by first manually creating a ground truth for 14 cases in a multi-case study, and then comparing the results of our automated detectors to the ground truth for each of the 14 cases. In the cases we were able to identify 86\% of the decision points correctly, and a statistical analysis of our data shows only a negligible effect size for differences to the ground truth.
DOI: 10.5281/zenodo.3442143
title: BIRAFFE: Bio-Reactions and Faces for Emotion-based Personalization

description: We present <strong>BIRAFFE</strong>, a dataset consisting of <em><strong>electrocardiogram (ECG)</strong></em>, <em><strong>galvanic skin reaction (GSR)</strong></em> and changes in <em><strong>facial expression</strong></em> signals recorded during affect elicitation by means of <em><strong>audio-visual stimuli</strong></em> (from IADS and IAPS databases) and our two proof-of-concept <em><strong>affective games</strong></em> ("Affective SpaceShooter 2" and "Fred Me Out 2"). All the signals were captured using portable and low-cost equipment: BITalino (r)evolution kit for ECG and GSR, and Creative Live! web camera for face photos (further analyzed by MS Face API). Besides the signals, the dataset consists also of <em><strong>subjects' self-assessment</strong></em> of their affective state after each stimuli (with the use of two widgets: the first one with <em><strong>5 emoticons</strong></em> and the second with <em><strong>valence and arousal</strong></em> dimensions) and <em><strong>"Big Five" personality traits</strong></em> assessment (using NEO-FFI inventory). For detailed description see <em>BIRAFFE-AfCAI2019-paper.pdf</em>.<br> For preview of the files before downloading the whole dataset see <em>sample-SUB1107-[...]</em> files. All documents and papers that report on research that uses the BIRAFFE dataset should acknowledge this by <strong>citing the paper</strong>:<br> Kutt, K., Drążyk, D., Jemioło, P., Bobek, S., Giżycka, B., Rodriguez-Fernandez, V., & Nalepa, G. J. (2020). "BIRAFFE: Bio-Reactions and Faces for Emotion-based Personalization". In G. J. Nalepa, J. M. Ferrandez, J. Palma, & V. Julian (Eds.), Proceedings of the 3rd Workshop on Affective Computing and Context Awareness in Ambient Intelligence (AfCAI 2019) (CEUR-WS Vol. 2609). http://ceur-ws.org/Vol-2609/ Our research related to the BIRAFFE dataset is summarized in:<br> Kutt, K., Drążyk, D., Bobek, S., & Nalepa, G. J. (2021). "Personality-Based Affective Adaptation Methods for Intelligent Systems". Sensors, 21(1), 163. https://doi.org/10.3390/s21010163
description: The BIRAFFE dataset is part of the work carried out by the AfCAI Research Group in Kraków, Poland. If you want to know more about us, see: https://afcai.re/
description: {"references": ["Kutt, K., Dr\u0105\u017cyk, D., Jemio\u0142o, P., Bobek, S., Gi\u017cycka, B., Rodriguez-Fernandez, V., & Nalepa, G. J. (2020). \"BIRAFFE: Bio-Reactions and Faces for Emotion-based Personalization\". In G. J. Nalepa, J. M. Ferrandez, J. Palma, & V. Julian (Eds.), Proceedings of the 3rd Workshop on Affective Computing and Context Awareness in Ambient Intelligence (AfCAI 2019) (CEUR-WS Vol. 2609). http://ceur-ws.org/Vol-2609/", "Kutt, K., Dr\u0105\u017cyk, D., Bobek, S., & Nalepa, G. J. (2021). \"Personality-Based Affective Adaptation Methods for Intelligent Systems\". Sensors, 21(1), 163. https://doi.org/10.3390/s21010163"]}
DOI: 10.25387/g3.17209085
title: Supplemental Materials for Rogers and Holland, 2022

description: Scripts for genomic prediction analysis of Genomes to Fields 2014 - 2016 data using weather variables and genetic markers.
DOI: 10.25387/g3.17209085.v1
title: Supplemental Materials for Rogers and Holland, 2022

description: Scripts for genomic prediction analysis of Genomes to Fields 2014 - 2016 data using weather variables and genetic markers.