cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.50710
title: Prostate Specific Antigen Density Values Among Patients With Symptomatic Prostatic Enlargement In Nigeria

description: <strong>Background</strong>

This study aims to estimate the  prostate specific antigen density(PSAD) cut off level for detecting prostate cancer( CAP) in Nigerian men  with “grey zone PSA’’(4-10ng/ml) and normal digital rectal examination findings . We addressed this research question: Is  the international PSAD cut off of 0.15 ideal for  detecting CAP in our symptomatic patients with  “grey zone PSA’’?

<strong> Methods</strong>

Aim:  To estimate the  prostate specific antigen density(PSAD) cut off level for detecting prostate cancer( CAP) in Nigerian men  with “grey zone PSA’’(4-10ng/ml) and normal digital rectal examination findings .

Design: prospective

Setting: A tertiary medical center in Enugu Nigeria

 Participants: Two hundred and fifty four  men with either benign prostatic hyperplasia (BPH) or  prostate cancer (CAP) were recruited.  

 Intervention: Patients with PSA above 4ng/ml or abnormal digital rectal examination or hypoecoic lesion in the prostate were biopsied.

Outcome measures:  PSAD and histology report of BPH or CAP

<strong>Results</strong>

Ninety seven patients had cancer of the prostate (CAP) while 157 has benign prostatic hyperplasia (BPH).  Seventy  two  patients had their serum PSA value within the range of 4.0 and 10ng/ml . PSAD cut off level to detect CAP was 0.04(sensitivity 95.88 %; specificity 28.7 %).

 

<strong>CONCLUSION</strong>        

The PSAD cut off level generated for Nigerian men in this study is 0.04 which is relatively different from international consensus. This PSAD cut off level has a positive correlation with histology and could detect patients with CAP who have “grey zone PSA’’.
DOI: 10.5281/zenodo.50728
title: Celegans_Trinity_Assembly

description: C. elegans transcriptome assembly, assembled using Trinity.
DOI: 10.5281/zenodo.50790
title: Nelldb- An Interlinked Ontology

description: NellDB is an Interlinked ontology where the widely used DBPedia is married with an emerging ontology called NELL (Never Ending Language Learner). This ontology enables to access NELL from DBPedia and hence it spans the search space by being connecting automatically with all other ontologies that have equivalence relation with the linked concepts of NELL and DBPedia.
DOI: 10.5281/zenodo.583694
title: P. Aeruginosa Expression Compendium For The Pao1 Kegg Pathways Case Study In Pathcore.

description: The normalized P. aeruginosa (PAO1) gene expression compendium uses datasets from ArrayExpress. Each gene expression vector is linearly normalized to the range between 0 and 1.

The script used to download the PAO1 datasets and process all samples into a single expression compendium is available here: https://bitbucket.org/greenelab/eadage/src/d8a98586e0f448a5b7d497f5516cc4e241635361/data_collection/data_collection.sh
description: {"references": ["Tan, J. et al. (2017). System-wide automatic extraction of functional signatures in Pseudomonas aeruginosa with eADAGE. https://doi.org/10.1101/078659"]}
DOI: 10.13012/b2idb-5072223_v1
title: Long-term Trends in Midwestern Milkweeds and their Relevance for Monarchs

description: This is the dataset used in the BioScience publication of the same name.

More information about this dataset: 

Interested parties can request data from the Critical Trends Assessment Program, which was the source for the data on natural areas in this study.  More information on the program and data requests can be obtained by visiting the program webpage.
Critical Trends Assessment Program, Illinois Natural History Survey.  http://wwx.inhs.illinois.edu/research/ctap/

These spatial datasets were used for analyses:

Illinois Natural History Survey. 2003. Illinois GAP analysis land cover classification 1999-2000, 1:100 000 Scale, Raster Digital Data, Version 2.0. Champaign, IL, USA.
Illinois State Geological Survey. 1995. Illinois Landcover Thematic Map Coverage Map 1991-1995. Champaign, IL, USA.
Illinois State Geological Survey. 2001. Illinois Landcover Thematic Map Coverage Map 1999-2000. Champaign, IL, USA.
USDA National Agricultural Statistics Service Cropland Data Layer. 1999-2015. Published crop-specific data layer [Online]. Available at https://nassgeodata.gmu.edu/CropScape/. USDA-NASS, Washington, DC.

Information on agricultural practices and landcover changes were derived from the following U.S. Department of Agriculture (USDA) resources:

USDA Economic Research Service. 2016. Adoption of Genetically Engineered Crops in the U.S.  Available at http://www.ers.usda.gov/data-products/.  USDA-ERS, Washington, DC.

USDA Natural Resources Conservation Service. 2015. Summary Report: 2012 National Resources Inventory. https://www.nrcs.usda.gov/Internet/FSE_DOCUMENTS/nrcseprd396218.pdf.  USDA-NRCS, Washington, DC, and Center for Survey Statistics and Methodology, Iowa State University, Ames, Iowa.
DOI: 10.5281/zenodo.50820
title: Risk And Predictors Of Stroke Recurrence After Ischaemic Stroke:  A Prospective Cohort Study In A Mountainous Province Of Central Highlands In Vietnam

description: Dataset associated with "Risk and predictors of stroke recurrence after ischaemic stroke:  a prospective cohort study in a mountainous province of central highlands in Vietnam" manuscript
DOI: 10.5281/zenodo.50904
title: Sds Micelle, Md Simulation, Gromacs 5.0, Charmm36

description: Molecular dynamics simulation of SDS micelle.  Gromacs 5.0, CHARMM36. Files generated with CHARMM GUI. System contains 60 SDS molecules, 16854 water molecules and 60 sodium ions. Temperature T=293K. Length is 20ns.
DOI: 10.5281/zenodo.592819
title: Libs-Github-Api: Initial Release

description: Data on the programming languages used in libraries (as in the institution, not as in reusable code libraries) which uses the "Libraries Sharing Code" page of the Code4Lib wiki as a source: http://wiki.code4lib.org/Libraries_Sharing_Code
DOI: 10.6084/m9.figshare.3556788
title: Appendix E. Details of production of water-borne chemical risk cues for Experiment 3 and a table with details of experimental cue treatments, sources of risk cues associated with Bythotrephes predation, and the cue effects being tested for with each treatment in Experiment 3.

description: Details of production of water-borne chemical risk cues for Experiment 3 and a table with details of experimental cue treatments, sources of risk cues associated with Bythotrephes predation, and the cue effects being tested for with each treatment in Experiment 3.
DOI: 10.6084/m9.figshare.3556857
title: Appendix D. Correlation matrix of the different community properties of the communities in the Jena Experiment.

description: Correlation matrix of the different community properties of the communities in the Jena Experiment.
DOI: 10.6084/m9.figshare.3556980.v1
title: Appendix A. A figure showing colony areas over time and relative colony size relationships.

description: A figure showing colony areas over time and relative colony size relationships.
DOI: 10.6084/m9.figshare.3557040.v1
title: Appendix B. Photographs of treatments in field and laboratory experiments.

description: Photographs of treatments in field and laboratory experiments.
DOI: 10.6084/m9.figshare.3557673
title: Appendix A. Figures showing the generalized ecosystem C cycle and estimated soil water release curve for the study site.

description: Figures showing the generalized ecosystem C cycle and estimated soil water release curve for the study site.
DOI: 10.6084/m9.figshare.5048023.v1
title: Instances of the article "Bi-objective Scheduling on a Restricted Batching Machine" by Marta Cabo, José Luis González-Velarde, Edgar Possani, and Yasmín A. Ríos-Solís

description: Instances of the article "Bi-objective Scheduling on a Restricted Batching Machine" by Marta Cabo, José Luis González-Velarde, Edgar Possani, and Yasmín A. Ríos-Solís
DOI: 10.13012/b2idb-0071156_v1
title: Data for "Ammonia Flux Measurements above a Corn Canopy using Relaxed Eddy Accumulation and a Flux Gradient System"

description: Ammonia flux measurement data using flux gradient and relaxed eddy accumulation methods, and ancillary environmental data collected during the 2014 corn-growing season in Central Illinois, USA. This excel file contains two spreadsheets: one README sheet, and one sheet containing all data. These data were used in the development of the manuscript titled "Ammonia Flux Measurements above a Corn Canopy using Relaxed Eddy Accumulation and a Flux Gradient System."
DOI: 10.5281/zenodo.1291912
title: Openaire Fp7 Post-Grant Open Access Pilot: Datasets And Reporting

description: *description edited on June 18  2018*

Versions in reverse order of publication.

<strong>20180618_OpenAIRE2020_FP7PostGrantPilot_data.xlsx:</strong> update of the last dataset - status of 65 publications in progress changed to 'paid'. This has no significant influence on the statistical analysis already made, as the estimated data was already processed. 

<strong>20180331_OpenAIRE2020_FP7PostGrantPilot_data.xlsx</strong>  : These datasets contain all datasets related to the publications funded within the OpenAIRE FP7 Post-Grant Open Access Pilot from its start in May 1st 2015 until February 28th 2018. The final report of the Pilot will be based on this dataset. 

<strong>20170831_DatasetD5.4.xlsx</strong>: This dataset contains all data related to the publications funded within the OpenAIRE FP7 Post-Grant Open Access Pilot in the two first years of its run, from May 2015 until April 30, 2017. The Pilot has received an extension of 10 months. This dataset will receive an update after the Pilot has come to a definitive end (February 2018).

A final version will be added to this record once all remaining accounting is wrapped up (July 2018). However, we are confident that the numbers presented here show trends and averages adequately, even if the absolute numbers will still change slightly. 

The Pilot website can be found at : https://postgrantoapilot.openaire.eu

To be eligible, a publication needed to comply with the following conditions: 


	Part of FP7 project that has ended, but no longer than two years ago at the moment of acceptance of publication P
	ublished in an Open Access Journal - we do not accept publications in so-called hybrid journals, which are journals that make individual articles Open Access but remain subscription based as a whole 
	Maximum 3 publications per project
	The funding cap is € 2000 for articles and € 6000 for monographs.


Some author fees exceed this cap slightly due to currency conversion. Any other anomalies in this dataset are to be ascribed to human error. Some adjustments might have been made on accounting level that are not reflected in this dataset. 

<br>
This dataset is available under  CC0 (https://creativecommons.org/publicdomain/zero/1.0/), which means that it is dedicated to the public domain. You are free to  copy, modify and distribute this dataset, even for commercial purposes, all without asking permission. Although it is not obliged, a credit to the OpenAIRE project is appreciated. At the OpenAIRE project, we are very interested in hearing how you have used this dataset. Feel free to ping us when you make use of it. <br>
author: Gwen Franck  gwen.franck@kb.nlOpenAIRE on Twitter @openaire_euinfo@openaire.eu
description: This dataset is related to OpenAIRE WP5 D5.4 (doi:10.5281/zenodo.998709)
DOI: 10.5281/zenodo.191266
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.50919
title: Pharmaceutical Equivalence Of Distributed Generic Antiretroviral (Arv) In Asian Settings: The Cross-Sectional Surveillance Study -Peda Study

description: This is the raw data for the PEDA study.
DOI: 10.6084/m9.figshare.3557925.v1
title: Appendix A. The effects of experimental artifacts and supplementary data on direct and indirect effects.

description: The effects of experimental artifacts and supplementary data on direct and indirect effects.
DOI: 10.6084/m9.figshare.3558087
title: Appendix B. Water and sediment bacterial production and DOC, TDN, and TDP in the field in the treated and untreated lake basins from November 2010 until December 2011.

description: Water and sediment bacterial production and DOC, TDN, and TDP in the field in the treated and untreated lake basins from November 2010 until December 2011.
DOI: 10.6084/m9.figshare.3558390.v1
title: Appendix B. Methods of collection and preparation of samples for analysis of stable isotopes.

description: Methods of collection and preparation of samples for analysis of stable isotopes.
DOI: 10.6084/m9.figshare.3559767
title: Appendix A. ANOVA results for the effects of plant community diversity and composition on pathogen group incidence and severity.

description: ANOVA results for the effects of plant community diversity and composition on pathogen group incidence and severity.
DOI: 10.6084/m9.figshare.3559815.v1
title: Appendix C. Metadata on sampling sites within islands.

description: Metadata on sampling sites within islands.
DOI: 10.18716/nmrshiftdb2/60004113/mrc_methanol-d4%20%28cd3od%29
title: NMR dataset for 5α-cyprinol sulfate
DOI: 10.5281/zenodo.1156726
title: Data For: Nonlinear Dynamics Of The Near-Shore Boundary Layer Of A Large Lake (Lake Geneva)

description: We examined near-shore and pelagic current variability in Lake Geneva, a large and deep lake in western Europe, using observations from several measurement locations and a three dimensional numerical model, based on the period 2014–2016. The data include measurements from Acoustic Doppler Current Profiler (ADCP) campaigns and vertical temperature profiles along with the corresponding modelling results. The model used in this study is based on the MIT General Circulation Model (MITgcm, http://mitgcm.org/, https://doi.org/10.1029/96JC02775).
DOI: 10.5281/zenodo.1156727
title: Data For: Nonlinear Dynamics Of The Near-Shore Boundary Layer Of A Large Lake (Lake Geneva)

description: We examined near-shore and pelagic current variability in Lake Geneva, a large and deep lake in western Europe, using observations from several measurement locations and a three dimensional numerical model, based on the period 2014–2016. The data include measurements from Acoustic Doppler Current Profiler (ADCP) campaigns and vertical temperature profiles along with the corresponding modelling results. The model used in this study is based on the MIT General Circulation Model (MITgcm, http://mitgcm.org/, https://doi.org/10.1029/96JC02775).
DOI: 10.5281/zenodo.1156978
title: Data For Figure 2

description: Data for figure 2
DOI: 10.5281/zenodo.1156979
title: Data For Figure 2

description: Data for figure 2
DOI: 10.5281/zenodo.159621
title: Sfsheath/Roman-Amphitheaters 0.1.1-Draft

description: This is a draft of roman-amphitheaters compiled as an early release, with ongoing cleanup following the 0.1.0-draft release. Only the source geojson and derived text formats are currently included.
DOI: 10.6084/m9.figshare.3560349
title: Appendix A. U.S. West Coast rocky intertidal food web and species natural history.

description: U.S. West Coast rocky intertidal food web and species natural history.
DOI: 10.6084/m9.figshare.3561549
title: Appendix A. Supplementary methods pertaining to the choice and measurement of centrality metrics.

description: Supplementary methods pertaining to the choice and measurement of centrality metrics.
DOI: 10.6084/m9.figshare.3562878.v1
title: Appendix B. Supplementary tables of statistical analyses.

description: Supplementary tables of statistical analyses.
DOI: 10.6084/m9.figshare.3563598
title: Appendix A. Comparison with literature data.

description: Comparison with literature data.
DOI: 10.6084/m9.figshare.3565332
title: Appendix A. A table showing ANOVA results for snail production and standing biomass.

description: A table showing ANOVA results for snail production and standing biomass.
DOI: 10.22021/bbldntz201611
title: The Linked Open British National Bibliography – Books. 1950/2016-11 – N-Triples
DOI: 10.22021/bbldrdfz201611
title: The Linked Open British National Bibliography – Books. 1950/2016-11 – RDF/XML
DOI: 10.22021/bsldntz201611
title: The Linked Open British National Bibliography – Serials. 1950/2016-11 – N-Triples
DOI: 10.22021/bsldrdfz201611
title: The Linked Open British National Bibliography – Serials. 1950/2016-11 – RDF/XML
DOI: 10.6084/m9.figshare.3566460
title: Appendix A. A map of the Ria Lagartos Biosphere Reserve in northeastern Yucatan, Mexico.

description: A map of the Ria Lagartos Biosphere Reserve in northeastern Yucatan, Mexico.
DOI: 10.6084/m9.figshare.3566478
title: Appendix C. Derivation of a Bayesian prior for white spruce seed rain at distance zero from the seed source using seed trap data.

description: Derivation of a Bayesian prior for white spruce seed rain at distance zero from the seed source using seed trap data.
DOI: 10.6084/m9.figshare.3566529
title: Appendix C. A table listing prey species and locations, and the number of prey blubber samples used to generate QFASA estimates of polar bear diets.

description: A table listing prey species and locations, and the number of prey blubber samples used to generate QFASA estimates of polar bear diets.
DOI: 10.6084/m9.figshare.3567663
title: Appendix A. Relationship between the number of pollinator groups and the natural log of the number of grid cells occupied by a plant species.

description: Relationship between the number of pollinator groups and the natural log of the number of grid cells occupied by a plant species.
DOI: 10.5281/zenodo.573265
title: Collaborative Reference Database As Of 2017-02-17

description: <strong>Abstract</strong> (our paper)

<strong>Code</strong>

crd-reference-v2.pl:<br>
mew.

<strong>Data</strong>

crd-reference-v2.txt.gz:<br>
mew.

crd-reference-v2-urls.txt.gz:<br>
mew.

<strong>Publication</strong>

This data set was created for our study. If you make use of this data set, please cite:<br>
Sho Sato, Mitsuo Yoshida. Current Status of Reference Services in Japanese Libraries Analyzed with the Collaborative Reference Database. <em>Current Awareness (in Japanese)</em>. no.332, pp.xx-xx, 2017.<br>
http://current.ndl.go.jp/ca_list

<strong>Note</strong>

The raw data is available in the following page.<br>
http://crd.ndl.go.jp/jp/help/general/api.html
DOI: 10.5281/zenodo.598406
title: Collaborative Reference Database As Of 2017-02-17

description: <strong>Abstract</strong> (our paper)

<strong>Code</strong>

crd-reference-v2.pl:<br>
mew.

<strong>Data</strong>

crd-reference-v2.txt.gz:<br>
mew.

crd-reference-v2-urls.txt.gz:<br>
mew.

<strong>Publication</strong>

This data set was created for our study. If you make use of this data set, please cite:<br>
Sho Sato, Mitsuo Yoshida. Current Status of Reference Services in Japanese Libraries Analyzed with the Collaborative Reference Database. <em>Current Awareness (in Japanese)</em>. no.332, pp.xx-xx, 2017.<br>
http://current.ndl.go.jp/ca_list

<strong>Note</strong>

The raw data is available in the following page.<br>
http://crd.ndl.go.jp/jp/help/general/api.html
DOI: 10.5281/zenodo.60006
title: Bluebridge Survey Respondent Database

description: This dataset includes the responses of over 200 French companies and academic institutes that compiled a survey published by the BlueBRIDGE project in January 2016. A full survey results report is available at the following url http://www.bluebridge-vres.eu/publications/press-releases/bluebridge-online-survey-final-statistical-report
DOI: 10.5281/zenodo.60088
title: Preprints From Arxiv.Org In Cs And Q-Bio

description: arXiv Quantitative Biology (q-bio)

This dataset contains all preprints with the label “q-bio” from 2003 (when the section was introduced) to 2014. Downloaded on 10 June, 2016.

arXiv CS (cs)

This dataset contains all preprints with the label “cs” from 2003 to 2014. Downloaded on 10 June, 2016.
DOI: 10.5281/zenodo.801611
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.801612
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.6084/m9.figshare.3573921
title: Appendix D. Detailed Wilcoxon’s matched pairs test results testing for the improvement of species distribution models with the addition of herbivore and/or plant variables.

description: Detailed Wilcoxon’s matched pairs test results testing for the improvement of species distribution models with the addition of herbivore and/or plant variables.
DOI: 10.6084/m9.figshare.5815395
title: Brand-Evoked Mental Imagery: The Role of Brands Exerting Mental Imagery

description: Dataset provides evidence of the moderating role of brand familiarity and brand favorability in visual mental imagery. Also experimental input is provided
DOI: 10.5281/zenodo.50969
title: Urls Von Webseiten Mit Typ Bibliothek Aus Lobid.Org

description: List of 5292 URLs. Most are supposed to belong to German libraries. Data originates from Lobid.org on May, 4th 2016. Generated via:

curl "http://beta.lobid.org/organisations/search?q=type:Library+AND+url:*&size=6000" &gt; libs-with-urls.json

cat libs-with-urls.json | grep \"url\" | cut -d '"' -f4 &gt; urls.txt

Only a few minor corrections were made (for example <em>http://</em> instead of <em>http//:</em>).
DOI: 10.5281/zenodo.60225
title: Specmatch Library

description: Library for SpecMatch-Emp, updated 08/14/2016.
DOI: 10.5281/zenodo.60227
title: Disentangling The Effects In Note-Taking Strategy: Generation And Summarization

description: Datasets for Experiment 1 and Experiment 2.
DOI: 10.6084/m9.figshare.5349160
title: Ingress-Egress Haram Data.xls

description: The file contains Ingress and Egress Simulation Data obtained by using LegionEvac crowd simulation software for Almasjid An Nabawi (The Haram). The file contains 5 different sheets for the different sections of the Haram.  The details will be explained in a publication soon.  When the research paper is published the reference will be added to this dataset.
DOI: 10.5281/zenodo.1162456
title: Cancermine

description: Results from tool executed using PubRunner on MEDLINE corpus.
DOI: 10.5281/zenodo.1162457
title: Cancermine

description: Results from tool executed using PubRunner on MEDLINE corpus.
DOI: 10.5281/zenodo.193011
title: Jisc Research Data Shared Service Metadata Focus Group Use Cases

description: Dataset of use cases collected between July and October 2016 during a series of metadata focus groups conducted with a number of the <strong>Research Data Shared Service</strong> pilots who volunteered for the process.

This dataset is available in two formats (including an open format) with the same content: 180 use cases in the following user story structure: 


	<strong>As a</strong>
	<strong>Theme</strong>
	<strong>I want </strong>
	<strong>So that</strong>
	<strong>Comments</strong>


The .xlsx file contains additional formatting grouping the use cases by theme, role, data and community.
DOI: 10.5281/zenodo.60232
title: Panasonic Ncr18650B Formation, Rpt And Half Cell Data Set

description: This dataset is a complement to a publication in "Batteries":

Durability and Reliability of EV Batteries Under Electric Utility Grid Operations.

Part1: Cell-to-cell variations and preliminary testing 

The data consists on matlab files for each tested cell.
DOI: 10.5281/zenodo.852655
title: Countwords

description: Results from tool executed using PubRunner on MEDLINE corpus. Code for the tool can be found at https://github.com/NCBI-Hackathons/PubRunner/tree/master/server/tools/CountWords/0.1
DOI: 10.5281/zenodo.852656
title: Countwords

description: Results from tool executed using PubRunner on MEDLINE corpus. Code for the tool can be found at https://github.com/NCBI-Hackathons/PubRunner/tree/master/server/tools/CountWords/0.1
DOI: 10.5281/zenodo.852693
title: Countwords

description: Results from tool executed using PubRunner on MEDLINE corpus. Code for the tool can be found at https://github.com/NCBI-Hackathons/PubRunner/tree/master/server/tools/CountWords/0.1