cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.76d82/1
title: CHD1Z.nex

description: NEXUS file containing 175 resolved alleles from intron 19 of the chromo-helicase DNA binding (CHD1Z) gene sampled from 105 Common (Green-winged) Teal (Anas crecca). Populations (OW, Old World; NW, New World; Attu, Aleutian Islands; Shemya, Aleutian Islands; Adak, Aleutian Islands; Ugamak, Aleutian Islands) are defined within the file. Note that CHD1Z is located on the Z-chromosome, and therefore, females only have a single copy.
DOI: 10.5061/dryad.76d82/2
title: CRYAB.nex

description: NEXUS file containing 202 resolved alleles from intron 1 of the alpha-B crystallin (CRYAB) gene sampled from 101 Common (Green-winged) Teal (Anas crecca). Populations (OW, Old World; NW, New World; Attu, Aleutian Islands; Shemya, Aleutian Islands; Adak, Aleutian Islands; Ugamak, Aleutian Islands) are defined within the file.
DOI: 10.5061/dryad.76d82/3
title: ENO1.nex

description: NEXUS file containing 210 resolved alleles from intron 8 of the alpha enolase (ENO1) gene sampled from 105 Common (Green-winged) Teal (Anas crecca). Populations (OW, Old World; NW, New World; Attu, Aleutian Islands; Shemya, Aleutian Islands; Adak, Aleutian Islands; Ugamak, Aleutian Islands) are defined within the file.
DOI: 10.5061/dryad.76d82/4
title: FGB.nex

description: FASTA file containing 210 resolved alleles from intron 7 of the beta fibrinogen (FGB) gene sampled from 105 Common (Green-winged) Teal (Anas crecca). Populations (OW, Old World; NW, New World; Attu, Aleutian Islands; Shemya, Aleutian Islands; Adak, Aleutian Islands; Ugamak, Aleutian Islands) are defined within the file.
DOI: 10.5061/dryad.76d82/5
title: GRIN1.nex

description: FASTA file containing 210 resolved alleles from intron 11 of the N-methyl D-aspartate 1 glutamate receptor (GRIN1) gene sampled from 105 Common (Green-winged) Teal (Anas crecca). Populations (OW, Old World; NW, New World; Attu, Aleutian Islands; Shemya, Aleutian Islands; Adak, Aleutian Islands; Ugamak, Aleutian Islands) are defined within the file.
DOI: 10.5061/dryad.76d82/6
title: LDHB.nex

description: FASTA file containing 210 resolved alleles from intron 3 of the lactate dehydrogenase B (LDHB) gene sampled from 105 Common (Green-winged) Teal (Anas crecca). Populations (OW, Old World; NW, New World; Attu, Aleutian Islands; Shemya, Aleutian Islands; Adak, Aleutian Islands; Ugamak, Aleutian Islands) are defined within the file.
DOI: 10.5061/dryad.76d82/7
title: ODC1.nex

description: FASTA file containing 210 resolved alleles from intron 5 of the ornithine decarboxylase (ODC1) gene sampled from 105 Common (Green-winged) Teal (Anas crecca). Populations (OW, Old World; NW, New World; Attu, Aleutian Islands; Shemya, Aleutian Islands; Adak, Aleutian Islands; Ugamak, Aleutian Islands) are defined within the file.
DOI: 10.5061/dryad.76d82/8
title: PCK1.nex

description: FASTA file containing 210 resolved alleles from intron 8 of the phosphoenolpyruvate carboxykinase (PCK1) gene sampled from 105 Common (Green-winged) Teal (Anas crecca). Populations (OW, Old World; NW, New World; Attu, Aleutian Islands; Shemya, Aleutian Islands; Adak, Aleutian Islands; Ugamak, Aleutian Islands) are defined within the file.
DOI: 10.5061/dryad.84m54/10
title: Part 1 of volumetric data from a micro-CT scan of the anterior end of Syllis gracilis
DOI: 10.5061/dryad.91mk9/1
title: Kalopanax_nSSR_cpHap

description: Nuclear microsatellite genotype and chloroplast DNA haplotype data for Kalopanax septemlobus
DOI: 10.5061/dryad.9rk8v438/1
title: Microsatellite data set

description: Database of individual by individual sampling locations and microsatellites
DOI: 10.5061/dryad.9sv83/3
title: Outgoing response
DOI: 10.5061/dryad.9sv83/4
title: Incoming inquiry
DOI: 10.5061/dryad.bm676/14
title: GIS_Surface_rock

description: Ascii file for species distribution modeling, locations in UTM NAD 1927, Zone 11 North, cellsize = 100 m. This file contains primary bedrock types from USGS surface geology records.
DOI: 10.5061/dryad.bm676/7
title: GIS_Spring_Temp_mean

description: Ascii file for species distribution modeling, locations in UTM NAD 1927, Zone 11 North, cellsize = 100 m. This file contains estimates of the mean of spring (Feb-June) temperature for the period 2005-2009, using regression of weather station values on elevation and estimated 21 March solar radiation.
DOI: 10.5061/dryad.c2n18/1
title: Diversity Community & Predation

description: Data files for all the analyses in the manuscript
DOI: 10.5061/dryad.cb5td/1
title: ASReml data file

description: ASReml data file
DOI: 10.5061/dryad.cb5td/2
title: ASReml pedigree file

description: ASReml pedigree file
DOI: 10.5061/dryad.g0q15/1
title: DeLisle&Rowe_JEB_DATA
DOI: 10.5061/dryad.gd031k26/28
title: Supplemental Dataset 28
DOI: 10.5061/dryad.gd031k26/29
title: Supplemental Dataset 29
DOI: 10.5061/dryad.gd031k26/30
title: Supplemental Dataset 30
DOI: 10.5061/dryad.h065g/2
title: Supplemetary Figure 2

description: Supplementary Figure 2: The LGT affinity neighbourhood of genus Clostridium. Each node of the graph represents a bacterial genus coloured by class and scaled relative to the number of represented taxa (1-13). Two genera are connected by an edge if the number of inferred LGT events between them exceeds 5% of their shared genes. The shade of an edge is proportional to this ratio of LGT events to shared genes; black edges indicate relationships with at least as many LGT events as shared genes. The thickness of an edge scales relative to the actual number of inferred transfers (2-125) with thicker edges indicating more transfers.
DOI: 10.5061/dryad.h065g/5
title: EvolSimParams

description: Example EvolSimulator configuration file used to generate simulated trees and datasets.
DOI: 10.5061/dryad.h065g/6
title: Eukaryotic Supertrees

description: Eukaryotic supertrees described in the main manuscript.
DOI: 10.5061/dryad.kc596/1
title: Datafile

description: This file is a .zip compressed archive containing subdirectories each having raw data and analysis scripts for producing the 7 figures in the paper.
DOI: 10.5061/dryad.n11d4/1
title: Adult densities of Adoxophyes honmai in Japan

description: The data are adult counts of Adoxophyes honmai from a light trap at the Kagoshima tea research station in Japan.
DOI: 10.5061/dryad.ps173/1
title: Expt 1 high dose choice

description: This is the data from experiment 1, self selecting treatment
DOI: 10.5061/dryad.ps173/2
title: Expt 2 low dose choice

description: Data from experiment 2, self selecting treatment
DOI: 10.5061/dryad.ps173/3
title: Expt 1 high dose no choice

description: Data from experiment 1, no choice treatment
DOI: 10.5061/dryad.ps173/4
title: Expt 2 low dose no choice

description: Data from experiment 2, no choice treatment
DOI: 10.5061/dryad.q42p7/1
title: Microsatellite_Sylvia conspicillata

description: Microsatellite genotypes for individuals analysed in 15 loci and per population. Names of populations as in the manuscript.
DOI: 10.5061/dryad.q42p7/2
title: Acoustic traits_Sylvia conspicillata_standardized

description: Standardized acoustic traits for Sylvia conspicillata (2010-2011). Abbreviations as in the manuscript.
DOI: 10.5061/dryad.q42p7/3
title: Morphological traits_Sylvia conspicillata

description: Morphometric traits for all Sylvia conspicillata males (2010-2011). Abbreviations as in the manuscript.
DOI: 10.5061/dryad.qk688/1
title: rbcL sequences

description: The length of rbcL sequences more than 1300bp.
DOI: 10.5061/dryad.s279c/1
title: 454 sequence data obtained for P. dardanus f. lamborni

description: The extent of a duplicated fragment in Papilio dardanus f. lamborni was investigated using long-range PCR. PCR amplicons were shotgun sequenced with 454 pyrosequencing technology. Reads were mapped onto a subfragment of the BAC tile path using BWA. The file is a sorted bam file.
DOI: 10.5061/dryad.s279c/2
title: ConcatanatedBAC_Orange_CTDcontig71.fasta

description: Masked reference file for bam file
DOI: 10.5061/dryad.s2878/1
title: 12595
DOI: 10.5061/dryad.s3443/1
title: Simulated 4D images for testing the QuanDyn(TM) program

description: This .7z file can be opened using the freely available tool 7-Zip (www.7-zip.org). It contains 78 image files in NIFTI format. Most image files contain 288 volumes, each containing 1000 voxels, and are about 1MB in size. The file is a 4-dimensional image representing simulated functional image data from 1000 voxels (i = 1 to 1000) over 288 points in time (t = 1 to 288). See the ReadMe file and the PeerJ article text for further information.
DOI: 10.5061/dryad.sc724/1
title: ONLINE_APPENDIX_REVISED
DOI: 10.5061/dryad.sc724/2
title: Common LISP simulation programs

description: These two .zip archives contain the LISP programs that have been used in the simulation section for: (1) Yule trees and the 2-state symmetric model, (2) non-molecular-clock trees and HKY+G4 model. Readme are enclosed for further explanations.
DOI: 10.5061/dryad.vb229/1
title: Simmons & Firman 2013

description: Excel spreadsheet containing data on body weights and male genital measurements from natural populations of house mice, and populations undergoing experimental evolution.
DOI: 10.5061/dryad.vn110/1
title: Accession numbers for the three genes and species

description: Accession numbers for the three genes and species. In addition, the abbreviation names used for the phylogenetic analyses. “na” denotes sequences non available. Accession numbers of I. asiatica, I. fountaineae, I. elegans, I. e. ebneri, I. genei, I. graellsii, I. saharensis, I. senegalensis and I. pumilio for the three genes (KC430114 - KC430232).
DOI: 10.5061/dryad.0p88f/1
title: Field_data

description: Field data from 82 spring barley (H. vulgare L.) lines originating from German North Rhine Westphalia core collection. These lines were cultivated in randomized complete-block design with three replications in three different years (2001, 2002, and 2003) at the Research Station ’Dikopshof’ of University of Bonn, Germany.
DOI: 10.5061/dryad.1bt4q/1
title: Cyp337 and fitness traits in the Glanville fritillary butterfly: pedigree, phenotypic and SNP data.

description: This file contains pedigree information, phenotypic data for 13 life history traits measured in an outdoor population cage, and genotypic data for 16 SNPs in 10 genes, for a parent (n = 82) and offspring (n = 204) generation of Glanville fritillary butterflies.
DOI: 10.5061/dryad.20cf2/1
title: DATA1

description: Genotypes of the fish sampled: ID(A:fry ; P:anadromous)	type(fry/anadromous); sex of the anadromous fish; father and mother assigned to each fry. " * " corresponds to precocious parr.
DOI: 10.5061/dryad.36775/1
title: Triturus transcriptome-based gene models in FASTA format

description: Triturus transcriptome-based gene models in FASTA format
DOI: 10.5061/dryad.36775/11
title: Raw Ion Torrent reads in FASTQ format

description: Raw Ion Torrent reads in FASTQ format
DOI: 10.5061/dryad.36775/12
title: BWA alignments in SAM format

description: BWA alignments in SAM format
DOI: 10.5061/dryad.36775/13
title: Raw SNP reports in VCF format

description: Raw SNP reports in VCF format
DOI: 10.5061/dryad.36775/14
title: FASTA files of reconstructed sequences

description: FASTA files of reconstructed sequences
DOI: 10.5061/dryad.36775/15
title: Input files for the BAPS analysis (in GENEPOP format), NewHybrids and HIest.

description: Input files for the BAPS analysis (in GENEPOP format), NewHybrids and HIest.
DOI: 10.5061/dryad.36775/2
title: Excel sheet and macro to compose multiplexes

description: Excel sheet and macro to compose multiplexes
DOI: 10.5061/dryad.3kf75/1
title: Feeding results for different scleractinian and soft coral species offered microalgae prey

description: Data from laboratory feeding experiments where different microalgae prey were offered to different coral species. Each combination of one coral and microalgae species was performed individually and in replicates (n = 3). Positive and negative results were obtained by the presence/absence of PCR amplification product visualized by gel electrophoresis (2% agarose gel). Results for positive and negative controls are also shown. Positive results were genomic DNA extracts of algal cultures and of filtered water from feeding experiments. Negative controls were genomic DNA extracts of coral tissue that were unfed.
DOI: 10.5061/dryad.51s8p/1
title: lagrange_analysis_files

description: We applied the DEC model implemented in lagrange (Ree & Smith 2008) to obtain reconstructed ancestral areas at all internal nodes and infer probable dispersal scenarios over a distribution of dated mitonuclear phylogenies and dated nuclear species trees. The files implemented in lagrange include the geographic data for the mitonuclear data set and the nuclear species tree data set (.data files), the rate matrices for each time period within each paleodrainage hypothesis (.rm files), the distribution of mitonuclear phylogenies and species trees (.trees files) and the scripts to call each (.lg files).
DOI: 10.5061/dryad.51s8p/2
title: BEAST and *BEAST analyses

description: We utilized a Bayesian strategy that relied on external fossil calibrations in the perciform fish clade Centrarchidae to time-calibrate the mtDNA phylogeny, individual gene trees inferred from each of the ten nuclear genes and a phylogeny inferred from the concatenation of ten nuclear genes, and a phylogeny inferred from the concatenation of ten nuclear and two mitochondrial genes in BEAST. We also calibrated divergence times on a nuclear species tree using *BEAST, excluding the mitochondrial genes to avoid incongruence among gene trees resulting from mitochondrial replacement via introgressive hybridization that is common among species of Ceasia.  The xml files were generated in BEAUti, however the species tree divergence time xml file were also changed by hand.  All samples were collected in the field and accession numbers for each gene accompany this dryad submission
DOI: 10.5061/dryad.51s8p/3
title: Specimen_Genbank

description: A tab-delimited spread sheet of the specimens and genbank accession numbers generated in this study. The first column is the species identity, second column is the clode code identifier, and the remaining column are the gene names.  The ten nuclear genes are placed above the two mitochondrial genes.
DOI: 10.5061/dryad.51s8p/4
title: spectabmtDNA_phyloParsed71911

description: Partitioned Bayesian analyses were used to infer sets of posterior phylogenetic trees from the densely sampled mtDNA dataset, these analyses were applied in BEAST and MrBayes. We sampled the Ceasia clade much more extensively, however centrarchid fossil calibration priors were not used to conduct divergence time analyses on the larger data set. The xml file was created in BEAUti. All samples were collected in the field and accession numbers for each gene accompany this dryad submission.
DOI: 10.5061/dryad.55204/6
title: Spauligodon anolis - coxI sequence data

description: Contains 641-bp coxI sequence data for 55 Spauligodon anolis individuals, along with locality information that corresponds to GIS information in the article's online Supplementary Information.
DOI: 10.5061/dryad.55425/1
title: microsatellite raw data

description: Fstat input file describing the microsatellite raw data. There is 11 microsatellite markers, 170 individuals and 7 populations distributed from Est to West
DOI: 10.5061/dryad.55qb2/3
title: Distance table

description: Genetic distance table of all alignments with matches to 4 species. This table was the basis for locus selection for subsequent primer design.
DOI: 10.5061/dryad.55qb2/4
title: Distance table purged
DOI: 10.5061/dryad.55qb2/5
title: Decontamination files scripts protocol

description: Contains the BLAST results of the RRL reads against the NCBI nt collection, and all downstream steps performed to remove Homo sapiens sequences
DOI: 10.5061/dryad.55qb2/6
title: FASTA and ALN files purged
DOI: 10.5061/dryad.586b5/1
title: Escarpia_spicata_Metadata

description: Metadata for Escarpia spicata individuals in this study
DOI: 10.5061/dryad.586b5/2
title: Escarpia_southwardae_Metadata

description: Metadata for Escarpia southwardae individuals in this study
DOI: 10.5061/dryad.586b5/3
title: Escarpia_laminata_Metadata

description: Metadata for Escarpia laminata individuals in this study
DOI: 10.5061/dryad.586b5/4
title: Additional_Escarpia_Metadata

description: Additional samples added to study, requested by reviewers
DOI: 10.5061/dryad.586b5/5
title: Escarpia Raw Allele Calls

description: Raw allele calls for all three Escarpia groups. Loci name in row, individual name in column
DOI: 10.5061/dryad.586b5/6
title: Escarpia laminata raw allele calls

description: E. laminata raw allele calls. Loci name in row; individual name in column.
DOI: 10.5061/dryad.586b5/7
title: Escarpia_southwardae raw allele calls

description: E. southwardae raw allele calls. Loci name in row; individual name in column.
DOI: 10.5061/dryad.58ss8/30
title: CVA16-S

description: coxsackievirus A16 - structural gene
DOI: 10.5061/dryad.58ss8/31
title: CVB4-S

description: coxsackievirus B4 - structural gene
DOI: 10.5061/dryad.58ss8/32
title: CVA16-NS

description: coxsackievirus A16 - non-structural gene
DOI: 10.5061/dryad.58ss8/33
title: CHIKV-NS

description: Chikungunya virus - non-structural gene
DOI: 10.5061/dryad.58ss8/34
title: E6-S

description: Echovirus 6 - structural gene
DOI: 10.5061/dryad.58ss8/35
title: E9-NS

description: echovirus 9 - non-structural gene
DOI: 10.5061/dryad.58ss8/36
title: E11-NS

description: echovirus 11 - non-structural gene
DOI: 10.5061/dryad.6gc6h/1
title: variant pileup for sample 1 reads mapping

description: Paired end reads from sample 1 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtained with samtools from bam file.
DOI: 10.5061/dryad.6gc6h/2
title: variant pileup for sample 2 reads mapping

description: Paired end reads from sample 2 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file.
DOI: 10.5061/dryad.6gc6h/3
title: variant pileup for sample 3 reads mapping

description: Paired end reads from sample 3 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file.
DOI: 10.5061/dryad.6gc6h/4
title: variant pileup for sample 4 reads mapping

description: Paired end reads from sample 4 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file.
DOI: 10.5061/dryad.6gc6h/5
title: variant pileup for sample 5 reads mapping

description: Paired end reads from sample 5 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file.
DOI: 10.5061/dryad.6gc6h/6
title: variant pileup for sample 6 reads mapping

description: Paired end reads from sample 6 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file.
DOI: 10.5061/dryad.74m18/1
title: Hendricks-etal-SuppTable1

description: Supplementary Table 1. Taxonomic structure of Araneidae and Buccinoid gastropods.
DOI: 10.5061/dryad.76d82/10
title: Teal.3pop.8nuDNA.IMa2

description: Input file for analysis of population history in the program IMa2. The input contains 8 loci sampled from 94 individuals of Anas crecca (25 from North America, population 0; 25 from Eurasia, population 1; 44 from the Aleutian Islands, excluding Shemya, population 2). Note that the data have been filtered for recombination, and therefore, some loci have fewer than the expected number of alleles sampled. The command line for running IM was: -i Teal.3pop.8nuDNA.IMa2.infile -q 25 -m 15 -t 0.75 -b 1000000 -l 12.0 -hfg -hk 50 -hn 50 -ha 0.9 -hb 0.75 -s 7510970185 -p5 -r2 -o outfile.txt
DOI: 10.5061/dryad.76d82/11
title: Teal.3pop.mtDNA.IMa2

description: Input file for analysis of population history from mtDNA control region (987 aligned nucleotides) in the program IM. The input contains 188 individuals of Anas crecca (86 from North America, population 0; 58 from Eurasia, population 1; 44 from the Aleutian Islands, excluding Shemya, population 2). The command line for running IM was: -i Teal.3pop.mtDNA.IMa2.infile -q 150 -m 0.4 -t 20 -b 500000 -l 12.0 -hfg -hk 20 -hn 20 -ha 0.9 -hb 0.85 -s 976267 -p5 -o outfile.txt
DOI: 10.5061/dryad.76d82/12
title: CHD1Z.tbs

description: tbs (to be specified) file defining population-level parameters for simulating neutral genetic diversity in the program MS for CHD1Z in green-winged teal. MS command line: ./ms 210 1000 -t tbs -r tbs tbs -I 3 50 50 110 -n 2 tbs -n 3 tbs -ej tbs 3 2 -en tbs 2 tbs -ej tbs 2 1 -en tbs 1 tbs -m 1 2 tbs -m 1 3 tbs -m 2 1 tbs -m 2 3 tbs -m 3 1 tbs -m 3 2 tbs -em tbs 1 2 tbs -em tbs 2 1 tbs &lt; ALTE-CHD1Z.tbs.ms &gt; ALTE-CHD1Z.ms.out [See the manual for MS for an explanation of the terms; http://home.uchicago.edu/rhudson1/source/mksamples.html]
DOI: 10.5061/dryad.76d82/13
title: CRYAB.tbs

description: tbs (to be specified) file defining population-level parameters for simulating neutral genetic diversity in the program MS for CRYAB in green-winged teal. MS command line: ./ms 210 1000 -t tbs -r tbs tbs -I 3 50 50 110 -n 2 tbs -n 3 tbs -ej tbs 3 2 -en tbs 2 tbs -ej tbs 2 1 -en tbs 1 tbs -m 1 2 tbs -m 1 3 tbs -m 2 1 tbs -m 2 3 tbs -m 3 1 tbs -m 3 2 tbs -em tbs 1 2 tbs -em tbs 2 1 tbs &lt; ALTE-CRYAB.tbs.ms &gt; ALTE-CRYAB.ms.out [See the manual for MS for an explanation of the terms; http://home.uchicago.edu/rhudson1/source/mksamples.html]
DOI: 10.5061/dryad.76d82/14
title: FGB.tbs

description: tbs (to be specified) file defining population-level parameters for simulating neutral genetic diversity in the program MS for FGB in green-winged teal. MS command line: ./ms 210 1000 -t tbs -r tbs tbs -I 3 50 50 110 -n 2 tbs -n 3 tbs -ej tbs 3 2 -en tbs 2 tbs -ej tbs 2 1 -en tbs 1 tbs -m 1 2 tbs -m 1 3 tbs -m 2 1 tbs -m 2 3 tbs -m 3 1 tbs -m 3 2 tbs -em tbs 1 2 tbs -em tbs 2 1 tbs &lt; ALTE-FGB.tbs.ms &gt; ALTE-FGB.ms.out [See the manual for MS for an explanation of the terms; http://home.uchicago.edu/rhudson1/source/mksamples.html]
DOI: 10.5061/dryad.76d82/15
title: GRIN1.tbs

description: tbs (to be specified) file defining population-level parameters for simulating neutral genetic diversity in the program MS for GRIN1 in green-winged teal. MS command line: ./ms 210 1000 -t tbs -r tbs tbs -I 3 50 50 110 -n 2 tbs -n 3 tbs -ej tbs 3 2 -en tbs 2 tbs -ej tbs 2 1 -en tbs 1 tbs -m 1 2 tbs -m 1 3 tbs -m 2 1 tbs -m 2 3 tbs -m 3 1 tbs -m 3 2 tbs -em tbs 1 2 tbs -em tbs 2 1 tbs &lt; ALTE-GRIN1.tbs.ms &gt; ALTE-GRIN1.ms.out [See the manual for MS for an explanation of the terms; http://home.uchicago.edu/rhudson1/source/mksamples.html]
DOI: 10.5061/dryad.76d82/16
title: LDHB.tbs

description: tbs (to be specified) file defining population-level parameters for simulating neutral genetic diversity in the program MS for LDHB in green-winged teal. MS command line: ./ms 210 1000 -t tbs -r tbs tbs -I 3 50 50 110 -n 2 tbs -n 3 tbs -ej tbs 3 2 -en tbs 2 tbs -ej tbs 2 1 -en tbs 1 tbs -m 1 2 tbs -m 1 3 tbs -m 2 1 tbs -m 2 3 tbs -m 3 1 tbs -m 3 2 tbs -em tbs 1 2 tbs -em tbs 2 1 tbs &lt; ALTE-LDHB.tbs.ms &gt; ALTE-LDHB.ms.out [See the manual for MS for an explanation of the terms; http://home.uchicago.edu/rhudson1/source/mksamples.html]
DOI: 10.5061/dryad.76d82/17
title: ODC1.tbs

description: tbs (to be specified) file defining population-level parameters for simulating neutral genetic diversity in the program MS for ODC1 in green-winged teal. MS command line: ./ms 210 1000 -t tbs -r tbs tbs -I 3 50 50 110 -n 2 tbs -n 3 tbs -ej tbs 3 2 -en tbs 2 tbs -ej tbs 2 1 -en tbs 1 tbs -m 1 2 tbs -m 1 3 tbs -m 2 1 tbs -m 2 3 tbs -m 3 1 tbs -m 3 2 tbs -em tbs 1 2 tbs -em tbs 2 1 tbs &lt; ALTE-ODC1.tbs.ms &gt; ALTE-ODC1.ms.out [See the manual for MS for an explanation of the terms; http://home.uchicago.edu/rhudson1/source/mksamples.html]