cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22261759
title: Transcriptome assemblies for four Argyranthemum taxa (two hybrid species and their parents)

description: Transcriptome assembly was carried out using Trinity version 2.11 (Grabherr et al., 2013). Read normalisation to k-mer coverage of 30 was carried out prior to assembly. Reads were normalised within species (fru, bro, sun, lem) using Trinity, and for the interspecific assembly ("all") the normalised reads from the four species were combined and normalised again in the same way. Transcripts were assembled with minimum k-mer coverage of 2, increasing the stringency for reads to be assembled together. To account for polymorphism between individuals and species, up to 4 nucleotide differences and a 15 bp gap were allowed when assembling transcripts.
DOI: 10.6084/m9.figshare.22006886
title: Genome resources for underutilised legume crops

description: (Draft) genome assemblies for jack bean (Cen), sword bean (Cgl), Kersting’s groundnut (Mge), moth bean (Vac), and zombi pea (Vve).
DOI: 10.6084/m9.figshare.22006886.v1
title: Genome resources for underutilised legume crops

description: (Draft) genome assemblies for jack bean (Cen), sword bean (Cgl), Kersting’s groundnut (Mge), moth bean (Vac), and zombi pea (Vve).
DOI: 10.6084/m9.figshare.21916038
title: Detection of locally adapted genomic regions in wild rice (Oryza rufipogon) using environmental association analysis

description: Bioclim climate data and genome SNPS for wild rice accessions (the latter from Huang et al. 2012)
DOI: 10.6084/m9.figshare.21916038.v1
title: Detection of locally adapted genomic regions in wild rice (Oryza rufipogon) using environmental association analysis

description: Bioclim climate data and genome SNPS for wild rice accessions (the latter from Huang et al. 2012)
DOI: 10.6084/m9.figshare.24454522
title: Filtered BirdNET output employed for vocal activity description

description: BirdNET predictions filtered to describe the vocal behaviour of three target species
DOI: 10.6084/m9.figshare.24454522.v1
title: Filtered BirdNET output employed for vocal activity description

description: BirdNET predictions filtered to describe the vocal behaviour of three target species
DOI: 10.20375/0000-0011-0dec-6
title: DIF_KIIS_0723-clarification-q5-24.pdf
DOI: 10.20375/0000-0011-0ded-5
title: DIF_KIIS_0723-questionnaire.pdf
DOI: 10.20375/0000-0011-0dee-4
title: DIF_KIIS_0723.sav
DOI: 10.20375/0000-0011-0def-3
title: DIF_KIIS_0723-selected results(UKR).pdf
DOI: 10.20375/0000-0011-0df0-0
title: DIF_KIIS_0723.xlsx
DOI: 10.5281/zenodo.10050218
title: Supplemental data for: Sex differences in branched-chain amino acid and tryptophan metabolism and pathogenesis of youth-onset type 2 diabetes

description: Supplemental data for: Sex differences in branched-chain amino acid and tryptophan metabolism and pathogenesis of youth-onset type 2 diabetes. 
Metabolites measured from spot urine samples of youth and adolescents.
DOI: 10.5281/zenodo.8260004
title: Supplemental data for: Sex differences in branched-chain amino acid and tryptophan metabolism and pathogenesis of youth-onset type 2 diabetes

description: Supplemental data for: Sex differences in branched-chain amino acid and tryptophan metabolism and pathogenesis of youth-onset type 2 diabetes. 
Metabolites measured from spot urine samples of youth and adolescents.
DOI: 10.5281/zenodo.8260005
title: Supplemental data for: Sex differences in branched-chain amino acid and tryptophan metabolism and pathogenesis of youth-onset type 2 diabetes

description: Supplemental data for: Sex differences in branched-chain amino acid and tryptophan metabolism and pathogenesis of youth-onset type 2 diabetes. Metabolites measured from spot urine samples of youth and adolescents.
DOI: 10.5281/zenodo.10037781
title: AirMLP - SPS30 low-cost sensors and Tecora reference station PM 2.5 data

description: The information below describes a dataset related to a study conducted in Turin, Italy, involving low-cost laser-scattering SPS30 sensors placed by Wiseair SRL and a Tecora reference station placed by Arpa Piemonte (Italian Air Quality Agency). This dataset spans two different time periods in 2022, specifically from March 1, 2022, to April 29, 2022, and from October 26, 2022, to December 30, 2022. The data in this dataset pertains to the mass concentration of PM2.5 (particulate matter with a diameter of 2.5 micrometres or less).
 
The reference station's data is divided into two periods and is provided in files named "rf_x.csv." These files contain hourly data and timestamps in GMT+1. Each file has three columns:

"valid_at" (in Rome local hour, GMT+1)
"valore_originale" (PM 2.5 raw mass concentration values recorded by the reference station)
"pm2p5" (PM 2.5 mass concentration validated values by the air quality agency)
The low-cost sensors, referred to as "ari_xxxx.csv," provide data at approximately 15-minute frequency. These files contain the following columns:

"valid_at" (in GMT)
"pm2p5" (PM 2.5 raw mass concentration measured by the SPS30 sensor)
"relative_humidity" (expressed as a percentage)
"temperature" (in degrees Celsius)
"pressure" (in hPA)
"wind_speed" (in meters per second)
"cloud_coverage" (expressed as a percentage)
Notably, the "relative_humidity" and "temperature" values are gathered from sensors placed within a device containing the SPS30 low-cost sensor.
 
Here's a summary of the specific data files in this dataset:

"rf_1.csv": Hourly data provided by the Air Quality Agency for the first period.
"rf_2.csv": Hourly data provided by the Air Quality Agency for the second period.
"arpa_1727.csv," "arpa_1952.csv," and "arpa_1953.csv": Three low-cost sensors placed by Wiseair, which refer to the first period.
"arpa_1885.csv" and "arpa_2049.csv": Two low-cost sensors placed by Wiseair, that refer to the second period.
DOI: 10.5281/zenodo.10037780
title: AirMLP - SPS30 low-cost sensors and Tecora reference station PM 2.5 data

description: The information below describes a dataset related to a study conducted in Turin, Italy, involving low-cost laser-scattering SPS30 sensors placed by Wiseair SRL and a Tecora reference station placed by Arpa Piemonte (Italian Air Quality Agency). This dataset spans two different time periods in 2022, specifically from March 1, 2022, to April 29, 2022, and from October 26, 2022, to December 30, 2022. The data in this dataset pertains to the mass concentration of PM2.5 (particulate matter with a diameter of 2.5 micrometres or less).
 
The reference station's data is divided into two periods and is provided in files named "rf_x.csv." These files contain hourly data and timestamps in GMT+1. Each file has three columns:

"valid_at" (in Rome local hour, GMT+1)
"valore_originale" (PM 2.5 raw mass concentration values recorded by the reference station)
"pm2p5" (PM 2.5 mass concentration validated values by the air quality agency)
The low-cost sensors, referred to as "ari_xxxx.csv," provide data at approximately 15-minute frequency. These files contain the following columns:

"valid_at" (in GMT)
"pm2p5" (PM 2.5 raw mass concentration measured by the SPS30 sensor)
"relative_humidity" (expressed as a percentage)
"temperature" (in degrees Celsius)
"pressure" (in hPA)
"wind_speed" (in meters per second)
"cloud_coverage" (expressed as a percentage)
Notably, the "relative_humidity" and "temperature" values are gathered from sensors placed within a device containing the SPS30 low-cost sensor.
 
Here's a summary of the specific data files in this dataset:

"rf_1.csv": Hourly data provided by the Air Quality Agency for the first period.
"rf_2.csv": Hourly data provided by the Air Quality Agency for the second period.
"arpa_1727.csv," "arpa_1952.csv," and "arpa_1953.csv": Three low-cost sensors placed by Wiseair, which refer to the first period.
"arpa_1885.csv" and "arpa_2049.csv": Two low-cost sensors placed by Wiseair, that refer to the second period.
DOI: 10.17909/fejm-x413
title: HH30 STIS Spectra
DOI: 10.17909/jxke-sz23
title: HH30 WFPC2 image
DOI: 10.6084/m9.figshare.24454576
title: JujubeDataSet_mini.zip

description: A High-Precision Jujube Disease Spot Detection during the Sorting Process
DOI: 10.6084/m9.figshare.22650253.v3
title: Rapid migration of Mongolian oak into southern Asian boreal forest

description: The datasets include data on temperature, precipetation, tree ages (mongolian oak), 13C, 15N and elements of plan leavea and soils (0-10 cm), etc., across a temperate-boreal ecotone of in Northeast China. They support the findings of the manuscript entitled "Rapid migration of Mongolian oak into southern Asian boreal forest".
DOI: 10.5281/zenodo.10050123
title: test
DOI: 10.6084/m9.figshare.24454534
title: Article Data: Evaluation of temporal and spatial electromagnetic radiations in the GSM-850 MHz frequency band

description: Article Data: Evaluation of temporal and spatial electromagnetic radiations in the GSM-850 MHz frequency band
DOI: 10.6084/m9.figshare.24454534.v1
title: Article Data: Evaluation of temporal and spatial electromagnetic radiations in the GSM-850 MHz frequency band

description: Article Data: Evaluation of temporal and spatial electromagnetic radiations in the GSM-850 MHz frequency band
DOI: 10.6084/m9.figshare.22650253
title: lost

description: The datasets include data on temperature, precipetation, tree ages (mongolian oak), 13C, 15N and elements of plan leavea and soils (0-10 cm), etc., across a temperate-boreal ecotone of in Northeast China. They support the findings of the manuscript entitled "Rapid migration of Mongolian oak into southern Asian boreal forest".
DOI: 10.6084/m9.figshare.22650253.v5
title: lost

description: The datasets include data on temperature, precipetation, tree ages (mongolian oak), 13C, 15N and elements of plan leavea and soils (0-10 cm), etc., across a temperate-boreal ecotone of in Northeast China. They support the findings of the manuscript entitled "Rapid migration of Mongolian oak into southern Asian boreal forest".
DOI: 10.6084/m9.figshare.22650253.v4
title: Rapid migration of Mongolian oak into the southern Asian boreal forest

description: The datasets include data on temperature, precipetation, tree ages (mongolian oak), 13C, 15N and elements of plan leavea and soils (0-10 cm), etc., across a temperate-boreal ecotone of in Northeast China. They support the findings of the manuscript entitled "Rapid migration of Mongolian oak into southern Asian boreal forest".
DOI: 10.5281/zenodo.10050124
title: test
DOI: 10.5281/zenodo.8315696
title: Simulation results of adaptive multicast streaming for videoconferences in software-defined networks

description: Real-time applications, such as video conferences, have strong Quality of Service requirements for ensuring a decent Quality of Experience. Nowadays, most of these conferences are performed over wireless devices. Thus, an appropriate management of both heterogeneous mobile devices and network dynamics is necessary. Software Defined Networking enables the use of multicasting and stream layering inside the network nodes, two techniques able to enhance the quality of live video streams. In this paper, we propose two algorithms for building and maintaining multicast sessions in a software-defined network. The first algorithm sets up the initial multicast trees for a given call. It optimally places the stream layer adaptation function inside the core network in order to minimize the bandwidth consumption. This algorithm has two versions: the first one, based on shortest path trees is minimizing the latency, while the second one, based on spanning trees is minimizing the bandwidth consumption. The second algorithm adapts the multicast trees according to the network changes occurring during a call. It does not recompute the trees, but only relocates the stream layer adaptation functions. It requires very low computation at the controller, thus making our proposal fast and highly reactive. Extensive simulation results confirm the efficiency of our solution in terms of processing time and bandwidth savings compared to existing solutions such as multiple unicast connections, Multipoint Control Unit solutions and application layer multicast.
DOI: 10.5281/zenodo.8315697
title: Simulation results of adaptive multicast streaming for videoconferences in software-defined networks

description: Real-time applications, such as video conferences, have strong Quality of Service requirements for ensuring a decent Quality of Experience. Nowadays, most of these conferences are performed over wireless devices. Thus, an appropriate management of both heterogeneous mobile devices and network dynamics is necessary. Software Defined Networking enables the use of multicasting and stream layering inside the network nodes, two techniques able to enhance the quality of live video streams. In this paper, we propose two algorithms for building and maintaining multicast sessions in a software-defined network. The first algorithm sets up the initial multicast trees for a given call. It optimally places the stream layer adaptation function inside the core network in order to minimize the bandwidth consumption. This algorithm has two versions: the first one, based on shortest path trees is minimizing the latency, while the second one, based on spanning trees is minimizing the bandwidth consumption. The second algorithm adapts the multicast trees according to the network changes occurring during a call. It does not recompute the trees, but only relocates the stream layer adaptation functions. It requires very low computation at the controller, thus making our proposal fast and highly reactive. Extensive simulation results confirm the efficiency of our solution in terms of processing time and bandwidth savings compared to existing solutions such as multiple unicast connections, Multipoint Control Unit solutions and application layer multicast.
DOI: 10.6084/m9.figshare.24454075
title: Rapid migration of Mongolian oak into the southern Asian boreal forest

description: The datasets include data on temperature, precipetation, tree ages (mongolian oak), 13C, 15N and elements of plan leavea and soils (0-10 cm), etc., across a temperate-boreal ecotone of in Northeast China. They support the findings of the manuscript entitled "Rapid migration of Mongolian oak into southern Asian boreal forest".
DOI: 10.6084/m9.figshare.24454075.v1
title: Rapid migration of Mongolian oak into the southern Asian boreal forest

description: The datasets include data on temperature, precipetation, tree ages (mongolian oak), 13C, 15N and elements of plan leavea and soils (0-10 cm), etc., across a temperate-boreal ecotone of in Northeast China. They support the findings of the manuscript entitled "Rapid migration of Mongolian oak into southern Asian boreal forest".
DOI: 10.5281/zenodo.10050237
title: Simulation results of routing algorithms for multilayer networks

description: Most current routing protocols are based on path computation algorithms in graphs (e.g., Dijkstra, Bellman-Ford, etc.). These algorithms have been studied for a long time and are very well understood, both in a centralized and distributed context, as long as they are applied to a network having a single communication protocol. The problem becomes more complex in the multi-protocol case, where there is a possibility of encapsulation of some network protocols into others, therefore inducing nested tunnels. The classic algorithms cited above no longer work in this case because they cannot manage the protocol encapsulations and the corresponding protocol stacks. In this work, we propose a highly parallelizable algorithm that takes into account protocol encapsulations as well as protocol conversions in order to compute shortest paths in a multi-protocol network. To achieve this computation efficiently, we study the transitive closure between subpaths (i.e., the concatenation of two subpaths to obtain a longer one) in the case where each subpath induces a protocol stack, and thus tunnels. Leveraging on Software-Defined Networks with a controller having a highly parallel architecture enables us to compute the routing tables of all nodes in a very efficient way. Experimentation results on both random and realistic topologies show that our algorithm outperforms the previous solutions proposed in the literature.
DOI: 10.5281/zenodo.10050238
title: Simulation results of routing algorithms for multilayer networks

description: Most current routing protocols are based on path computation algorithms in graphs (e.g., Dijkstra, Bellman-Ford, etc.). These algorithms have been studied for a long time and are very well understood, both in a centralized and distributed context, as long as they are applied to a network having a single communication protocol. The problem becomes more complex in the multi-protocol case, where there is a possibility of encapsulation of some network protocols into others, therefore inducing nested tunnels. The classic algorithms cited above no longer work in this case because they cannot manage the protocol encapsulations and the corresponding protocol stacks. In this work, we propose a highly parallelizable algorithm that takes into account protocol encapsulations as well as protocol conversions in order to compute shortest paths in a multi-protocol network. To achieve this computation efficiently, we study the transitive closure between subpaths (i.e., the concatenation of two subpaths to obtain a longer one) in the case where each subpath induces a protocol stack, and thus tunnels. Leveraging on Software-Defined Networks with a controller having a highly parallel architecture enables us to compute the routing tables of all nodes in a very efficient way. Experimentation results on both random and realistic topologies show that our algorithm outperforms the previous solutions proposed in the literature.
DOI: 10.3886/e194765v1-142663
title: Depression Symptom Network Data

description: Participants rated perceived concern (1-7) of 9 depression symptoms. Participants included Black and White women recruited via prolific. Demographic information included.
description: Black and White women at least age 18 living in the United States.
DOI: 10.5281/zenodo.10050323
title: Observation of an Exotic Insulator to Insulator Transition upon Electron Doping the Mott Insulator CeMnAsO

description: VASP input and output for the computational part of the paper "Observation of an Exotic Insulator to Insulator Transition upon Electron Doping the Mott Insulator CeMnAsO".
stoichiometric.tar.gz: Data for stoichiometric CeMnAsOdefective.tar.gz: Data for CeMnAsO0.94F0.06
DOI: 10.5281/zenodo.8403226
title: Observation of an Exotic Insulator to Insulator Transition upon Electron Doping the Mott Insulator CeMnAsO

description: VASP input and output for the computational part of the paper "Observation of an Exotic Insulator to Insulator Transition upon Electron Doping the Mott Insulator CeMnAsO".
stoichiometric.tar.gz: Data for stoichiometric CeMnAsOdefective.tar.gz: Data for CeMnAsO0.94F0.06
DOI: 10.5281/zenodo.8403227
title: Many body localisation of electrons in the layered oxypnictide CeyMnAsO1-xFx

description: VASP input and output for the computational part of the paper "Many body localisation of electrons in the layered oxypnictide Ce<sub>y</sub>MnAsO<sub>1-x</sub>F<sub>x</sub>". stoichiometric.tar.gz: Data for stoichiometric CeMnAsO<br> defective.tar.gz: Data for CeMnAsO<sub>0.94</sub>F<sub>0.06</sub>
DOI: 10.5281/zenodo.10003708
title: Data related to "Modeling the Diverse Effects of Divisive Normalization on Noise Correlations"

description: Data files for the paper, Modeling the Diverse Effects of Divisive Normalization on Noise Correlations, available on bioRxiv
 
For the corresponding code toolbox, please see the Github repository
 
Please cite as:

Modeling the Diverse Effects of Divisive Normalization on Noise Correlations
Oren Weiss, Hayley A. Bounds, Hillel Adesnik, Ruben Coen-Cagli
bioRxiv 2022.06.08.495145; doi: https://doi.org/10.1101/2022.06.08.495145
DOI: 10.5281/zenodo.8118187
title: Data related to "Modeling the Diverse Effects of Divisive Normalization on Noise Correlations"

description: Data files for the paper, Modeling the Diverse Effects of Divisive Normalization on Noise Correlations, available on bioRxiv
 
For the corresponding code toolbox, please see the Github repository
 
Please cite as:

Modeling the Diverse Effects of Divisive Normalization on Noise Correlations
Oren Weiss, Hayley A. Bounds, Hillel Adesnik, Ruben Coen-Cagli
bioRxiv 2022.06.08.495145; doi: https://doi.org/10.1101/2022.06.08.495145
DOI: 10.5281/zenodo.8118188
title: Data related to "Modeling the Diverse Effects of Divisive Normalization on Noise Correlations"

description: Calcium imaging datasets used in the paper<strong> "Modeling the Diverse Effects of Divisive Normalization on Noise Correlations"</strong> This data contains calcium imaging data from primary visual cortex of mice viewing visual stimuli while performing a behavioral task. For more detail, see the publication and readme.
DOI: 10.5281/zenodo.10050338
title: Data of decomposition, topology, and the corresponding graphs of Random Woody Crown Networks with size from 10 to 248 nodes

description: Data of decomposition, topology and the corresponding graphs of Random Woody Crown Networks with size from 10 to 248 nodes
DOI: 10.5281/zenodo.10050337
title: Data of decomposition, topology, and the corresponding graphs of Random Woody Crown Networks with size from 10 to 248 nodes

description: Data of decomposition, topology and the corresponding graphs of Random Woody Crown Networks with size from 10 to 248 nodes
DOI: 10.34740/kaggle/dsv/6820433
title: Printed Digits Dataset
DOI: 10.5281/zenodo.7028187
title: Zooplankton abundance from the Congo River and tributaries

description: Data set generated by a BIOTA-FAPESP 2020/04047-5 project, coordinated by Prof. Gilmar Perbiche Neves from UFSCar-DHb, Brazil. The available data are on composition, abundance (individuals per cubic meter) and diversity indices.
DOI: 10.5281/zenodo.7028186
title: Zooplankton abundance from the Congo River and tributaries

description: Data set generated by a BIOTA-FAPESP 2020/04047-5 project, coordinated by Prof. Gilmar Perbiche Neves from UFSCar-DHb, Brazil. The available data are on composition, abundance (individuals per cubic meter) and diversity indices.
DOI: 10.5517/ccdc.csd.cc2f2dpm
title: CCDC 2236640: Experimental Crystal Structure Determination

description: Related Article: Yi-Yang Zhao, Ye Zhou, Ran Li, Bo Li|2023|J.Cluster Sci.|34|2791|doi:10.1007/s10876-023-02424-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f2dqn
title: CCDC 2236641: Experimental Crystal Structure Determination

description: Related Article: Yi-Yang Zhao, Ye Zhou, Ran Li, Bo Li|2023|J.Cluster Sci.|34|2791|doi:10.1007/s10876-023-02424-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24435481
title: NatCommun_TNSS_2023.zip

description: The data deposited here are grouped into the following categories.ARPES data: photoemission intensity maps collected at SSRL beamline 5 and ALS beamline 7. Used to generate figures 3, S4, S6XRD data: synchrotron x-ray diffraction data collected at CHEXS beamline 4. Used to generate figures 2, 4, S2, S3DFT data: first principles calculation data. Used to generate figures 2, 3, S7ED data: exact diagonalization and mean-field calculation data. Used to generate figures 4, S8, S9Other characterizations: resistivity as measured from 4-probe methods in a PPMS (Quantum Design), EDX for composition characterization. Used to generate figures 1, S1, S5