cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3k5ks5w988
title: The effect of the collection system on biowaste quality

description: The current database is the backbone of the research by Angouria-Tsorochidou and Thomsen (2020) “The effect of the collection system on biowaste quality and a modelling framework to evaluate organic waste-derived fertilizers” Elisavet Angouria-Tsorochidou1, 2 and Marianne Thomsen1, 2*. The database consists of two data sets, i) quality data of source-separated organic fraction of municipal solid waste (SS-OFMSW) [column C:CN] and ii) quality data of mechanically separated organic fraction of municipal solid waste (MS-OFMSW) from mixed collected residual waste [column CP:DY.] The goal of this database is to present aggregated data on biowaste quality for the ease of future research on circular bio-economy. The database is given on the “Data” tab. It includes 111 cases (row 1) and consists of 55 registered parameters (column A). The references for each case is given in row 58 for all 111 cases while the bibliographic form is given in the “Bibliography” tab in detail. The authors suggest that before the utilization of each case, the users should refer to the original data paper for further information, as well as, citing the original reference. The data included in the database are transformed into uniform units to allow for comparison. The “Memorandum” tab includes further information for the inserted data. 1 Research Group on Eco-Industrial System Analysis, Department of Environmental Science, Aarhus University, Frederiksborgvej 399, Postboks 358, DK-4000, Roskilde, Denmark 2 Aarhus University Centre for Circular Bioeconomy *Corresponding Author email: mth@envs.au.dk The research was performed as part of the Horizon 2020 project DECISIVE (Decentralised valorisation of biowaste) under grant agreement N° 689229. The Graduate School of Science and Technology at Aarhus University further supported this work.
DOI: 10.17632/pwfvn273j4
title: Integrative Genetics and Multiomics Analysis Unveil Mechanisms and Therapeutic Targets in Vitiligo: Insights from GWAS-meta, Microarray, Single-cell Transcriptomics, and ChIP-seq Data, Highlighting JAK/STAT Pathway Regulation of CTSS in Vitiligo

description: The structural files of proteins and small molecular compounds involved in molecular docking.
DOI: 10.17632/thkn8p22zy
title: Syndecan-1-mediated Loading of VEGF-A into Small Extracellular Vesicles Facilitates Peritubular Capillary Repair during AKI-to-CKD Transition

description: minimally processed files available of RNAseq data in Fig 3A
DOI: 10.21233/s7tg-4e60
title: Lake Biwa, South Basin ostracode surface sample dataset

description: Raw data for the Lake Biwa, South Basin ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.22297927.v1
title: Vietnam Gridded Observation dataset

description: This is the gridded observation dataset for Vietnam, created from the 481 precipitation and 147 temperature stations. Data availability: - Variables: pr, tas, tasmax, tasmin - Historical period: 1980–2014 The file is in Netcdf format.
DOI: 10.6084/m9.figshare.16826740.v1
title: Data for the "Coupling traction force patterns and actomyosin wave dynamics reveals mechanics of cell motion"

description: Data for the "Coupling traction force patterns and actomyosin wave dynamics reveals mechanics of cell motion", Elisabeth Ghabache, Yuansheng Cao, Yuchuan Miao, Alex Groisman, Peter N. Devreotes, Wouter-Jan RappelThe data is presented in .mat files and corresponds to Figs. 2-6 in the study.
DOI: 10.17632/yhdtkszvgp
title: Euvsdisinfo dataset

description: EUvsDisinfo is the flagship project of the European External Action Service’s East StratCom Task Force. It was established in 2015 to better forecast, address, and respond to the Russian Federation’s ongoing disinformation campaigns affecting the European Union, its Member States, and countries in the shared neighbourhood.
Using data analysis and media monitoring services in 15 languages, EUvsDisinfo identifies, compiles, and exposes disinformation cases originating in pro-Kremlin media that are propagated across the EU and Eastern Partnership countries. 

EUvsDisinfo is the only searchable, open-source repository of its kind, and has two core objectives:

(1) To increase public awareness and understanding of the Kremlin’s disinformation operations;
(2) To help citizens to develop resistance to digital information and media manipulation.

As the data is not directly accessible for analysis, we scraped it using the Selenium and Beautiful soup Python’s packages. We retrieved 14 497 cases of Disinformation and their disproofs (information) from the 6th of January 2015 to the 22nd of November 2022.

Each case has seven attributes:

Date: Date of publication;
Links: Link to the article in the EUvsDisinfo database;
Title: Title of the disinformation article;
Outlets: Outlets of propagation;
Country: Target countries;
Disinformation: Text of Disinformation;
Information: Factual Information.
DOI: 10.6084/m9.figshare.7513190.v1
title: Operational conditions of an electrostatic separator for concentrate copper from electronic waste

description: Abstract Interest in recycling for the recovery of valuable substances, such as precious metals from electric and electronic waste has been increasing year after year due to the large amount present in such waste compared to primary sources. There is environmental concern, since the amount of this kind of waste is increasing due to rapid technological advances. This study aimed to test the different operating conditions of an electrostatic separator for the concentration of copper from printer circuit boards (PCB). The PCBs were milled in knife mills and separated according to the difference of granule sizes into two fractions: A (&lt;0.5 mm); B (0.5
DOI: 10.15468/dl.udgtr7
title: Occurrence Download

description: A dataset containing 6055 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Agrochola litura Linnaeus, 1761"
 ]
}

 The dataset includes 6055 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009207-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.3562200.v1
title: Appendix A. Formula for the calculation of stratification (Brunt-Väisälä frequency).

description: Formula for the calculation of stratification (Brunt-Väisälä frequency).
DOI: 10.6084/m9.figshare.1124255.v1
title: Raw data: analysis of unpublished studies US FDA novel drugs approved in 2013

description: Raw data: analysis of unpublished studies US FDA novel drugs approved in 2013
DOI: 10.6084/m9.figshare.12859523.v1
title: Supplementary Material for: EUS-Guided Gallbladder Drainage Using an Improved Self-Expandable Covered Metal Stent with Anti-Stent Migration System (with Video)

description: <b><i>Background:</i></b> Recently, lumen-apposing metal stents (LAMS) have been developed as novel devices for not only endoscopic ultrasound (EUS)-guided pancreatic fluid drainage but also for EUS-guided gallbladder drainage (GBD). Although LAMS might be clinically impactful, these stents have not yet become available as EUS-GBD stents in all countries, including Japan. Instead, improved metal stents (NEO stents) have become available. The aim of this pilot study was to evaluate the feasibility and safety of EUS-GBD using the improved metal stent with an anti-stent migration system for acute cholecystitis (AC). <b><i>Method:</i></b> The gallbladder was punctured using a 19-G needle, and a 0.025-inch guidewire was inserted into the gallbladder. After fistula dilation, stent deployment was performed from the gallbladder to the duodenum. Finally, a plastic 7-Fr pigtail stent was placed to prevent stent migration. <b><i>Result:</i></b> EUS-GBD using NEO stents with the anti-stent migration system was attempted in 12 consecutive patients with AC as a complication of other conditions. EUS-GBD was successfully performed in all patients without any adverse events, and clinical success was achieved in all patients. Median procedure time was 19.0 min (range, 19–24 min). In 4 patients, stent removal was successfully performed after 3 months. Stent migration during follow-up (median, 189 days) was not seen in any of the patients. <b><i>Conclusion:</i></b> Although this study has several limitations such as small number of patients and short follow-up period, the results show that NEO stents might be suitable as EUS-GBD stents in selected patients. Our results should be validated by a larger prospective, randomized study.
DOI: 10.17632/2xzzkmnpfx
title: Quorum-Sensing Model for the Pyoverdine Expression in P. aeruginosa.

description: The Quorum-Sensing Model for the Pyoverdine Expression in P. aeruginosa was constructed on the standard System Biology Markup Language (SBML) format and represented using System Biology Graphical Notation (SBGN) on the CellDesigner 4.4. software (XML file). The model consists of 114 species, among which are small molecules, proteins, genes whit their mRNAs, and nine complexes (Sheet 1 of the excel file). Also, the QS model has 103 reactions, including DNA transcription, mRNA translation, protein complex formation, inhibition reactions, and molecule-molecule interactions with positive, negative, or unknown influences (Figure 1). Each interaction and reaction in the QS model has the kinetic constant value established in the literature (Sheet 2 of the excel file). The values of the kinetic constants not reported by the literature were assumed according to the ranges of values of the kinetic constants reported for similar molecules. For the construction of the model, 114 ODEs were generated, and an elemental kinetic based on the Mass Action Law was assumed for all reactions that describe the system.
DOI: 10.17632/4yp3myd7s8
title: location and stratigraphic interpretation of floodplain cross-sections for four Belgian river valleys (Dijle, Mombeek, Grote Nete and Zwarte Beek).

description: This dataset contains the interpreted stratigraphic cross-sections (in .pdf) and their location (in .kmz) for all studied floodplain locations in Swinnen et al. (2020) - Caten
DOI: 10.18742/rdm01-92
title: Ab initio Molecular Dynamics Trajectories of Metallic Systems - Positions and Forces

description: The files consist of picoseconds-long canonical (and thermalised) trajectories of 4 metallic crystalline systems. Within each file, positions and forces of all the atom are saved.The time-step was chosen to be 2 fs.The temperature was controlled by a loosely coupled Langevin thermostat.The periodic cell was taken of dimension 4x4x4.Details of each file:Ni_500K.xyz: Nickel, 500K.Ni_1700K.xyz: Nickel, 1700K.Fe_500K.xyz: Iron, 500K.Fe_500K_vac.xyz: Iron, 500K, with a single vacancy.Utility:The data can be used to reproduce the results of the associated publication and for further developments of closely related research.A. Glielmo, P. Sollich, A. De Vita, “Accurate Interatomic Force Fields via Machine Learning with Covariant Kernels”, Physical Review B. Submitted
DOI: 10.6084/m9.figshare.28804481.v3
title: Shipping list for a transport company

description: <pre>A CSV file containing 100 transport task data, covering fields such as distance, load, transport mode, cost, time, carbon emission, priority and satisfaction score.</pre>
DOI: 10.17632/rft2kngyc2
title: Bank Affiliated Directors and Earnings management

description: Source code for bank affiliated directors and earnings management
DOI: 10.6084/m9.figshare.25101848.v1
title: Data for Object Understanding in Ungulates

description: In their natural environment, animals face a variety of ecological and social challenges, which might be linked to the emergence of different cognitive skills. To assess inter-specific variation in cognitive skills, we used ungulates as a study model, testing a total of 26 captive individuals across 5 different species (i.e., dwarf goats, <i>Capra aegagrus hircus</i>, llamas, <i>Lama glama</i>, guanacos, <i>Lama guanicoe</i>, zebras, <i>Equus grevyi</i>, and rhinos, <i>Diceros bicornis michaeli</i>). Across species, we used the same well-established experimental procedures to test individuals’ object permanence, short-term memory, causality, understanding of object properties, and gravity. Our results revealed that study subjects showed object permanence, were able to remember the position of hidden food after up to 60 seconds, and inferred the position of hidden food from the sound produced or not produced when shaking containers. Moreover, they showed an understanding of basic object properties, being able to locate objects hidden behind occluders based on their size and inclination, and could reliably follow the trajectory of falling objects across different conditions. Finally, inter-specific differences were limited to the understanding of object properties, and suggest that domesticated species as goats might perform better than non-domesticated ones in tasks requiring these skills. These results provide new information on the cognitive skills of a still understudied taxon and confirm ungulates as a promising taxon for the comparative study of cognitive evolution.
DOI: 10.6084/m9.figshare.28815632.v1
title: Raw Data

description: The dataset comprises the raw data derived from the experiment carried out within the research project titled "<b>Monoacylglycerol acyltransferase maintains ionotropic receptor expression for cool temperature sensing and avoidance in </b><b><i>Drosophila</i></b>" slated for publication in Communication Biology.
DOI: 10.6084/m9.figshare.28668482.v1
title: Supplementary Material for: Development and characterization of novel ELISAs for the specific quantification of the factor H-related proteins 2, 3, 4 and 5

description: Background: The complement system's alternative pathway relies on factor H (FH) for immune homeostasis. Next to FH, a group of highly similar proteins was described known as FH-related (FHR) proteins. The FH protein family includes FH, factor H-like protein 1, and five FHR proteins (FHR-1 to -5). The exact function of the FHRs is still unknown, necessitating further research. However, the lack of highly specific assays has hindered studying their role in health and disease. This study aimed to develop novel ELISAs for reliably and specifically quantifying levels of the FHRs in human blood.

Methods: Novel FHR specific antibodies were generated. Positive hybridoma clones were taken to monoclonality, verified for target specificity via ELISA and western blot, and antibody pairs were selected for further ELISA development. During development, ELISAs were characterized and validated for specificity, stability, accuracy and reproducibility among others.

Results: Monoclonal antibodies specific for FHR-2, -3, -4, or FHR-5 were generated. Using these antibodies, four ELISAs were developed capable of quantifying FHR levels in an accurate and robust manner. Each assay showed high target specificity, good analyte recovery and strong reproducibility between replicates, test-runs and test laboratories.

Conclusions: These assays enable specific and accurate quantification of FHR-2, -3, -4, and -5 in human blood. They facilitate large-scale screening of patient cohorts in a standardized manner and contribute to understanding the role of the FHRs in health and disease.
DOI: 10.17632/x6zjbrp998
title: Structural insights into caspase ADPR-deacylization catalyzed by a bacterial effector and host calmodulin. Zhang et al

description: Here are source data for our manuscript entitled “Structural insights into caspase ADPR-deacylization catalyzed by a bacterial effector and host calmodulin”.  Unprocessed immunoblots and gel images as well as histograms data are in the powerpoint file.
DOI: 10.6084/m9.figshare.20768590.v1
title: Supplementary Figs. 1, 11 & 12

description: Supplementary_Figure_1.zip : Three files listing coverage stats used to construct Supplementary Fig. 1. <br> Supplementary_Figure_11.zip : Chromopainter results for all chromosomes, used for plotting Supplementary Fig. 11. <br> Supplementary_Figure_12.zip : Reorganized chromopainter results for all chromosomes, used for plotting Supplementary Fig. 12. <br>
DOI: 10.17632/m79n3w73jj
title: Dataset on Patient Factors Related to Pre-treatment Delay of Pulmonary Tuberculosis

description: This dateset comprised of the data for the research project 'Patient factors related to pre-treatment delay of pulmonary tuberculosis: a retrospective cohort study in Bangladesh'. The study was conducted to identify the patient factors associated with pre-treatment delay of pulmonary TB in terms of delay in care seeking, diagnosis and treatment initiation for TB. This study, for the first time, has made an in-depth assessment of the types and distributions of patient factors as predictors of pre-treatment delay of TB in the country.
DOI: 10.6084/m9.figshare.28341509.v1
title: Data and script

description: Datset:The specific data and script used to generate all the figures in the study
DOI: 10.17632/746gd85hr5
title: Data for: Psychological and neural responses to architectural interiors

description: This is the behavioral data from the experiments outlined in our study, "Psychological and neural responses to architectural interiors."
DOI: 10.17632/t9h6p943xy
title: BanglaSER: A Bangla speech emotion recognition dataset

description: BanglaSER is a Bangla language-based speech emotion recognition dataset. It consists of speech-audio data of 34 participating speakers from diverse age groups between 19 and 47 years, with a balanced 17 male and 17 female nonprofessional participating actors. This dataset contains 1467 Bangla speech-audio recordings of five rudimentary human emotional states, namely angry, happy, neutral, sad, and surprise. Three trials are conducted for each emotional state. Hence, the total number of recordings involves 3 statements × 3 repetitions × 4 emotional states (angry, happy, sad, and surprise) × 34 participating speakers = 1224 recordings + 3 statements × 3 repetitions × 1 emotional state (neutral) × 27 participating speakers = 243 recordings, making the total number of recordings of 1467. BanglaSER dataset is collected by recording through smartphones, and laptops, having a balanced number of recordings in each category with evenly distributed participating male and female actors, preserves the real-life environment, and would serve as an essential training dataset for the speech emotion recognition model in terms of generalization. BanglaSER is compatible with various deep learning architectures such as CNN, LSTM, BiLSTM etc.
DOI: 10.6084/m9.figshare.27060607.v1
title: Supplementary Materials for "Early Paleozoic large-scale subduction retreat and slab rollback revealed by mafic arc magmas in the southern Central Asian Orogenic Belt"

description: Early Paleozoic arc magmas, along with rifted terrains and back-arc basins, are prominent along the northern margin of the Tarim-North China collage in the Central Asian Orogenic Belt (CAOB). However, their petrogenesis and tectonic implications remain elusive. Mafic arc magmas may provide insights into the thermal state of subducted slabs and subduction zone dynamics. This study examines the petrogenesis and tectonic implications of these magmas, focusing on arc mafic rocks from the Kalatashtagh area, NW China. Zircon U-Pb dating indicate they formed at 450 - 420 Ma, while zircon ε<sub>Hf</sub> values imply a depleted mantle source. Whole-rock compositions resemble high-Al arc basalts. Investigations reveal a predominant (~5%) slab-derived sediment melt in the mantle source. Thermodynamic modelling indicates these magmas resulted from 20% melting of garnet lherzolite at about 120 km, followed by fractional crystallization of clinopyroxene, olivine, spinel and plagioclase. These findings, combined with regional data, suggest a continental arc extending over 1,500 km along the northern margin of the collage during 450 - 420 Ma. Geochemical evidence suggests that slab-derived sediment melts dominated over hydrous fluids in the sub-arc mantle wedge, indicating high slab surface temperature (SST). This elevated SST likely results from asthenosphere upwelling due to slab rollback, which also responsible for rifting of marginal terrains, and the formation of back-arc basins along the northern of the collage. This retreating-type accretionary orogenic belt may globally connect to form a subduction girdle, facilitating prolonged dispersal of Gondwana, drift and reunion of its derived continents in Asia, and opening of the Paleo-Tethys.
DOI: 10.17632/rp6xy7rfhn
title: EnergyPlus Models - Research paper: Natural ventilation potential from weather analyses and building simulation

description: EnegyPlus files used in the investigations of the research article entitled “Natural ventilation potential from weather analyses and building simulation”. Reference: N.R.M. Sakiyama, L. Mazzaferro, J.C. Carlo, T. Bejat, H. Garrecht, Natural ventilation potential from weather analyses and building simulation, Energy and Buildings. 2020, 231, 110596. https://doi.org/10.1016/j.enbuild.2020.110596 Data in Brief: N.R.M. Sakiyama, L. Mazzaferro, J.C. Carlo, T. Bejat, H. Garrecht, Dataset of the EnergyPlus model used in the assessment of natural ventilation potential through building simulation, Data in Brief. 2020, 34, 106753. https://doi.org/10.1016/j.dib.2021.106753
DOI: 10.17632/7w45jx35hd
title: Annotated underwater fish detection dataset from pond environments

description: Fish detection using computer vision is increasingly recognized as significant in aquaculture, particularly for monitoring and managing fish populations in small-scale settings. Traditional fish population assessment methods are invasive, labor-intensive, and often inaccurate, prompting the development of automated solutions using computer vision and deep learning. This dataset comprises annotated images of the Orange Chromide (Etroplus maculatus) fish species from ponds in Kolathur, Chennai. The videos were captured using a Crosstour CT9000 underwater camera at 60fps with 1-minute intervals. Recordings were made inside the pond at depths of less than 4 meters, covering a wide angle of approximately 135 degrees. The videos include various complexities such as occlusion, turbid water conditions, high fish density per frame, and natural lighting conditions. Keyframes were carefully extracted from these videos and formatted at 640x640 pixels in .jpg format. Each image was annotated in .txt format using the bounding box style. The annotated dataset comprises 586 images, divided into train (409), validation (118), and test (59) sets. This dataset offers a comprehensive and challenging set of images that reflects real-world conditions in South Indian ponds. The dataset can facilitate advancements in computer vision applications within aquaculture, including automated fish population monitoring, growth tracking, health assessment, and behavior analysis.
DOI: 10.17632/pyd8b9z2w9
title: data1

description: the C:N:P ecological stoichiometry of roots, stems, leaves, flowers, and soils across four plant species
DOI: 10.17632/jxnrkcfcjh
title: Data for: ARE U.S. LUNG CANCER MORTALITY RATES CONVERGING?

description: Lung Cancer Mortality Data