cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/k7vfsd4692
title: The efficacy of two household cleaning and disinfecting agents on Lentil (Lens culinaris Medik) and Faba bean (Vicia faba) seed germination during COVID-19 pandemic.

description: Recently, because of the COVID-19 pandemic, especially such a pandemic may recur in the future, people are obsessed with excessive use of disinfectants, particularly the sodium hypochlorite bleach and vinegar before it ended up throwing residue into the sewer and then into the groundwater, which considered as an essential source of drinking water and irrigation beside surface waters. This study aimed to test the effect of four treatment levels (0.005%, 0.05%, 0.1%, and 0.5%) from two diluted household sanitizers (bleach and vinegar) in addition to the control (0%) on the seed germination of lentil and faba bean. Six germination parameters, including germination percentage (GP), germination index (GI), mean germination time (MGT), mean germination rate (MGR), vigor index (VI), fresh weight (FW), and dry weight (DW) of seedling, were measured. The completely randomized design (CRD) was used to examine the germination with three replicates at the lab conditions. Results showed notable variation among the disinfecting agent treatments on seeds germination. The germination parameters indicated a direct relationship between increasing of the treatment concentration and the seedling growth inhibition. This research clearly illustrates the detrimental effect of using the household cleaning and disinfecting agents at high dilution levels (0.1, 0.5% active ingredients) on the two legume crop seeds' germination. Data were statistically analyzed using one-way ANOVA, Tukey’s (HSD) test for multiple comparisons, and the correlation between GP and other germination parameters.
DOI: 10.17632/pv8t3hbg4t
title: Proteasome-Bound UCH37 Debranched Ubiquitin Chains to Promote Degradation. Deol et al.

description: The following documents show sequencing data confirming CRISPR/Cas9 genome editing of cell lines, all gels used for analysis, and mass spectrometric chromatograms and LC traces.
DOI: 10.17632/jfxn9twkcr
title: Mangrove_datasheet

description: This data contains the soil organic (SOC) and dry bulk density (DBD) values of soil samples from natural, degraded and restored mangrove sites in Thanjavur district in Tamil Nadu, India.
DOI: 10.17632/r49tcwnyb6
title: Texas Nightly Crash Counts by Lunar Phase

description: This dataset contais nightly wildlife-vehicle collision (WVC) and non-WVC counts in Texas over 112 lunar cycles.

Data Fields:
------------
1. is_wildlife (bool) - Description: Indicates whether the crash involves wildlife (True) or not (False).
2. night (str) - Description: Represents different phases of the lunar cycle (e.g., Full moon, Preceding new moon).
3. synodic_month (int) - Description: Denotes the synodic month associated with the crash event.
4. crash_count (int) - Description: Represents the count of crashes recorded under the specified conditions.
DOI: 10.11583/dtu.19738789.v1
title: Data set for "The sintering behavior of ellipsoidal particles"

description: This repository is the data described in the article "The sintering behavior of ellipsoidal particles".
<br>
The repository contains data for 25 simulations done using a kinetic Monte Carlo model of sintering.
<br>
Five different particle aspect ratios, AR, are considered. The simulations for each of these has its own folder. Within that folder are the five independent simulations run for each particle aspect ratio.
<br>
For each subdirectory, the data is stored as described below. 
The kinetic Monte Carlo sintering data, i.e. the voxel information as function of Monte Carlo Steps (MCS) is contained in the file "voxel_timesteps.mat", which is a Matlab data file containing two arrays. The first is the "atoms" array which is a 4D array with a number of simulation snapshots (i.e. where the state of the simulation is saved) and then voxel information in the 300x300x300 cubed lattice considered. Thus for example atoms(12,:,:,:) is the simulation snapshot 12 with voxel data for 300x300x300 sites. The voxel data is such that a simulation boundary site has a value of -1, a pore site a value of 0 and a grain site an integer value larger than 1. Different grains have different integer values. The other array in the matlab file is the "timestep" array which simply contains informations on how many MCS each simulation snapshot corresponds to.
All information presented in the article can be extracted from the kinetic Monte Carlo simulation snapshots. However, the information regarding relative density, mean grain size, strain and mean coordination number is, for ease of use, given in the "data_processed.txt" in each simulation sub-folder. The header in the file describe how the file is structured.
DOI: 10.17632/np6hr423dp
title: Workplace Safety Risk Management Practice in Medium-Scale Hydropower Construction in Nepal

description: H
DOI: 10.17632/4zb3t7zxct
title: Biomarkers of metabolism in multiple sclerosis
DOI: 10.17632/gnf7tndkph
title: Altered Frequency and Phenotype of HLA-G-Expressing DC-10 in Type 1 Diabetes Patients at Onset and in Subjects at Risk to Develop the Disease. 

description: In the manuscript "Altered Frequency and Phenotype of HLA-G-Expressing DC-10 in Type 1 Diabetes Patients at Onset and in Subjects at Risk to Develop the Disease"  (doi: 10.3389/fimmu.2021.750162.), we reported, for the first time, the evaluation of a population of HLA-G-expressing tolerogenic dendritic cells in the peripheral blood of T1D patients and first-degree relatives demonstrating the impairment in the number and phenotype of DC-10 is associated with the risk to T1D.
The three dataset here loaded (Raw_data_1, 2, and 3) contain all the clinical and immunological data, supporting our conclusions, that have been used to build the manuscript.
An additional file (raw_data_description) contains the main guidelines to correctly associate the raw data with the corresponding figure/table in the manuscript.
DOI: 10.6084/m9.figshare.28804121.v1
title: The genome of <i>Xenopyricularia zizaniicola</i> JB-1

description: A fungal pathogen causing leaf spot disease in Zizania latifolia was isolated and identified as Xenopyricularia zizaniicola strain JB-1. To investigate its genomic features, we sequenced and assembled the first high-quality genome of X. zizaniicola strain JB-1 using PacBio HiFi technology.
DOI: 10.6084/m9.figshare.17696915.v2
title: D.valentini BLASTp, PFAM, EggNOG hits

description: This dataset presets all protein outputs from BLASTp, PFAM, EggNOG
DOI: 10.17632/xh24hyx9kd
title: "Unraveling the Price-Concentration Relationship: The Role of National Distribution Centers in Chilean Supermarket Industry Consolidation"

description: Replication data and Stata .do files for "Unraveling the Price-Concentration Relationship: The Role of National Distribution Centers in Chilean Supermarket Industry Consolidation", Economic Modelling.
DOI: 10.17632/bdbsgn32n6
title: Data for: Towards a Holarctic synthesis of peatland testate amoeba ecology: development of a new continental-scale palaeohydrological transfer function for North America and comparison to European data

description: Testate amoeba community data for 1956 modern surface samples throughout Canada and the USA, alongside environmental data (water table depth, pH) and location (lat/long). Full details given in 'Read me' tab.
DOI: 10.6084/m9.figshare.27755820.v1
title: <b><i>Sinopodisma qinlingensis</i></b> FCM.fcs

description: <b><i>Sinopodisma qinlingensis</i></b> FCM
DOI: 10.17632/b8szb8y7kp
title: Observations of munitions burial and migration during the MINELAB project,.

description: Positions, burial depths and migration distances of munitions deployed during the experimental campaign of the MINELAB project. Experiments were carried out at the estuary of the Misa River (Senigallia, Italy).
Timeseries of forcings acting at the estuary.
DOI: 10.17632/wpttyfpp9w
title: Who is the high seas fishing industry?
DOI: 10.17632/v9hjcmfgbc
title: Research Data

description: The data was collected for my doctoral thesis. The aim of my research was to identify farmers' intentions towards land abandonment.
DOI: 10.17632/zfnx5nywjz
title: Severe Adverse Reaction to Measles Vaccine Due to Homozygous Mutation in IFNAR2 Gene: A Case Report and Literature Review of IFNAR2 mutation In a Ten-Month-Old Infant

description: During a detailed genetic analysis using next-generation sequencing (NGS), a homozygous Variant of Uncertain Significance (VOUS) was detected in the IFNAR2 gene, which is crucial for the body's immune defense mechanisms against viruses. The genetic testing involved fragmenting the genomic DNA and enriching specific target areas, including the human coding exome and mitochondrial genome. This targeted DNA was then sequenced on an advanced Illumina platform to ensure comprehensive and accurate detection of genetic variants. Through an in-depth bioinformatics analysis, which included alignment to the reference GRCh37/hg19 genome, the variant c.713C&gt;A was identified, resulting in a premature stop codon at p.Ser238*. Despite the precise detection, the impact of this specific mutation on the protein function and its clinical implications remains uncertain.
DOI: 10.17632/vb4xvxk86v
title: Sponge Assemblages and Predicted Archetypes in the Eastern Canadian Arctic

description: Little information exists on the environmental requirements of sponges from the Canadian Arctic, increasing the necessity to establish baseline distribution data on sponge as - semblages to predict their susceptibility to climate change. Here we describe the sponge taxa of Hudson Strait, Ungava Bay, Western Davis Strait and Western Baffin Bay collected by Canadian research vessel trawl surveys. A total of 2026 sponge specimens were examined, and 93 different taxa were identified with 79% identified to species, of which 2 are new to science, 1 recorded for the first time in the North Atlantic, 16 are new records for the northwest Atlantic, and 10 are new records for the Baffin Bay, Davis Strait and Hudson Strait sponge fauna. Taxonomic distinctness was higher north of Cape Dyer and south of Davis Strait, whereas the number of species reached a maximum in Davis Strait, which represents the southern distribution limit of the arctic sponge fauna along the slope in this region. Five sponge species assemblages were identified, some of which have been observed elsewhere, suggesting that they may be common to the North Atlantic and at the generic level to the global oceans. Two of the Baffin Bay−Davis Strait assemblages were characterized by large structure-forming astrophorids: one, with arctic species, found at midwater depths in Baffin Bay and the other, characterized by boreal species, was found deeper, south of Davis Strait. Another assemblage characterized by glass and carnivorous sponges was found along the continental slope of western Baffin Bay. Candidate target indicator species are provided for future sponge community monitoring.
DOI: 10.17632/w88zprdmmj
title: The recursion method: Processing the continued fraction

description: Title of program: RECLIB Catalogue Id: ACDL_v1_0 Nature of problem Calculation of the local density of states and related quantities from the tridiagonalisation, or continued fraction, generated through the application of the recursion method. This may be for electronic or vibrational properties of any of the essentially locally interacting systems for which the recursion method is an appropriate way to solve the Schrodinger equation, i.e. in which nearer neighbour interactions dominate. Versions of this program held in the CPC repository in Mendeley Data ACDL_v1_0; RECLIB; 10.1016/0010-4655(84)90163-2 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/pp9p9kx4zt
title: Data van der Donk lab in Ayikpoe et al Nat Commun 2022 13:6135. doi: 10.1038/s41467-022-33890-w

description: Data for figures in main text and Supporting Information of Nat Commun 2022 13(1):6135. doi: 10.1038/s41467-022-33890-w
DOI: 10.6084/m9.figshare.28736588.v1
title: 补充材料S1-S6

description: 补充材料S1-S6
DOI: 10.17632/dt68zf8234
title: HRV as an Index of Impulse Control in Dogs: Experiment 1

description: In this experiment, dogs were either cued to lie-down and stay for 10 minutes (Impulse Control condition) or to enter a cage and stay there for the same duration (Kenneled condition) while their cardiac activity was measured. Each test session consisted of three phases. First, the dog was placed in the car cage and a 10 min baseline measurement was collected. Second, the dog was either cued by its handler to enter the experimental cage (Kenneled condition) or to lie-down and stay (Impulse Control condition) next to the experimental cage, whereupon the handler closed the cage and walked away from view. In both conditions, the dog had to stay for 10 minutes, while the handler was inconspicuously watching the dog from behind a window. In this way, the handler could see when the dog broke the stay and could immediately cue the dog from a distance to lie down again. Third, the dog was placed back into the car cage for a 10 min recovery baseline measurement. This dataset shows the (cardiac) data for each individual in each condition and phase. The Polar® software Polar Protrainer 5 was used to export the IBI’s as text files. Artifacts were replaced by linear interpolation of the means of the two neighboring data points. In accordance with the literature, five minutes of each phase were used to calculate HRV. Of the baseline phase, the last five minutes were analyzed. This allowed us to eliminate the stress-effects of beginning the experiment and of putting the polar strap around the chest of the dog. Of these five minutes, the last 30 seconds were removed to account for approaching the car and opening the trunk during that timeframe. Of the manipulation and recovery phase, the middle five minutes were analyzed in order to eliminate noise in the data caused by the handler’s presence when leaving or approaching the dog at the beginning and end.
DOI: 10.23641/asha.20999938.v1
title: Vocal measures by sample length (McDaniel & Brady, 2022)

description: <strong>Purpose: </strong>This study examines the effects of communication sample length on the reliability and convergent validity of six vocal measures for children with autism spectrum disorder (ASD) with minimal verbal skills. The results are expected to inform recommendations for the length of communication samples for clinical and research purposes. <strong>Method: </strong>Participants included 31 children with ASD (24 boys and seven girls; <em>M</em><sub>age</sub> = 6;7 [years;months], <em>SD</em> = 17 months) with minimal verbal skills. We coded six vocal measures that focus on vocalizations and early word productions from the Communication Complexity Scale (CCS) scripted administration protocol. To evaluate reliability of different sample lengths, we calculated intraclass correlation coefficients between the full CCS sample and 1-, 3-, 7-, 10-, and 20-min samples. To examine convergent validity, we calculated correlations between the six vocal measures for each sample length. <strong>Results: </strong>When coded from 10-min samples from the beginning of the CCS, all of the vocal measures exhibit adequate reliability with the full CCS sample. Some vocal measures exhibit adequate reliability with samples as short as 3 min. For convergent validity, all of the correlations between the vocal measures exceed .40 and are statistically significant for the 10-min samples except for some of the correlations with the proportion of communicative vocalizations. Similar results were found for other sample lengths. <strong>Conclusion: </strong>Findings support coding 10-min segments from the CCS scripted administration protocol to evaluate the vocal development skills of children with ASD with minimal verbal skills. <br> <strong>Supplemental Material S1. </strong>Pearson product moment correlations between vocal measures by sample length. <br> McDaniel, J., & Brady, N. C. (2022). The influence of communication sample length on reliability and convergent validity of vocal measures derived from the Communication Complexity Scale. <em>Journal of Speech, Language, and Hearing Research</em>. Advance online publication. https://doi.org/10.1044/2022_JSLHR-22-00010
DOI: 10.17632/7txtw48hj2
title: Thermal dependence of Daphnia life history reveals asymmetries between key vital rates

description: Life history data used in "Richard, R., Zhang, Y.-K., Hung, K.-W., 2023. Thermal dependence of Daphnia life history reveals asymmetries between key vital rates. Journal of Thermal Biology 115, 103653. https://doi.org/10.1016/j.jtherbio.2023.103653"
The tab "raw data" the life history data of all Daphnia individuals followed.
The tab  "Life history data" contains summary statistics at each temperature including replication, vital rates, and other life history metrics.
DOI: 10.17632/svbd7t4hkn
title: Application of Computer Vision Technology in Surface Damage Detection and Analysis of Shedthin Tiles in China: A Case Study of the Classical Gardens of Suzhou (Training set for machine learning)

description: Application of Computer Vision Technology in Surface Damage Detection and Analysis of Shedthin Tiles in China: A Case Study of the Classical Gardens of Suzhou (Training set for machine learning).Please refer to our published papers for details.
DOI: 10.6084/m9.figshare.11387673.v3
title: Dynamic Two Stage Modeling for Category-Level and Brand-Level Purchases Using Potential Outcome Approach With Bayes Inference

description: We propose an econometric two-stage model for category-level purchase and brand-level purchase that allows for simultaneous brand purchases in the analysis of scanner panel data. The proposed model formulation is consistent with the traditional theory of consumer behavior. We conduct Bayesian estimation with the Markov chain Monte Carlo algorithm for our proposed model. The simulation studies show that previously proposed related models can cause severe bias in predicting future brand choices, while the proposed method can effectively predict them. Additionally in a marketing application, the proposed method can examine brand switching behaviors that existing methods cannot. Moreover, we show that the prediction accuracy of the proposed method is higher than that of existing methods.
DOI: 10.17632/ydfkrv849v
title: Partial correction of immunodeficiency by lentiviral vector gene therapy in mouse models carrying Rag1 hypomorphic mutations

description: Recombination activating genes (RAG) 1 and 2 defects are the most frequent form of severe combined immunodeficiency (SCID). Patients with residual RAG activity have a spectrum of clinical manifestations ranging from Omenn syndrome to delayed-onset combined immunodeficiency, often associated with granulomas and/or autoimmunity (CID-G/AI). Lentiviral vector (LV) gene therapy (GT) has been proposed as an alternative treatment to the standard hematopoietic stem cell transplant and a clinical trial for RAG1 SCID patients recently started. However, GT in patients with hypomorphic RAG mutations poses additional risks, because of the residual endogenous RAG1 expression and the general state of immune dysregulation and associated inflammation. In this study, we assessed the efficacy of GT in 2 hypomorphic Rag1 murine models (Rag1F971L/F971L and Rag1R972Q/R972Q), exploiting the same LV used in the clinical trial encoding RAG1 under control of the MND promoter. Starting 6 weeks after transplant, GT-treated mice showed a decrease in proportion of myeloid cells and a concomitant increase of B, T and total white blood cells. However, counts remained lower than in mice transplanted with WT Lin- cells. At euthanasia, we observed a general redistribution of immune subsets in tissues, with the appearance of mature recirculating B cells in the bone marrow. In the thymus, we demonstrated correction of the block at double negative stage, with a modest improvement in the cortical/medullary ratio. Analysis of antigen-specific IgM and IgG serum levels after in vivo challenge showed an amelioration of antibody responses, suggesting that the partial immune correction could confer a clinical benefit. Notably, no overt signs of autoimmunity were detected, with B-cell activating factor decreasing to normal levels and autoantibodies remaining stable after GT. On the other hand, thymic enlargement was frequently observed, although not due to vector integration and insertional mutagenesis. In conclusion, our work shows that GT could partially alleviate the combined immunodeficiency of hypomorphic RAG1 patients and that extensive efficacy and safety studies with alternative models are required before commencing RAG gene therapy in these highly complex patients.
DOI: 10.17632/4v38m5wpcj
title: Bio-statistical Analysis of Orexinergic Receptor Interactions Data Set

description: This dataset contains molecular docking results of 124 neem (Azadirachta indica) phytochemicals against human orexinergic receptors OX2 (PDB ID: 4S0V) and OX1 (PDB ID: 6V9S), alongside reference ligands Suvorexant (4S0V) and [(2S)-2-[(2S)-butan-2-yl]-4-(5-chloro-1,3-benzoxazol-2-yl)-1,4-diazepan-1-yl][5-methyl-2-(2H-1,2,3-triazol-2-yl)phenyl]methanone (6V9S). Docking was performed using AutoDock Vina, yielding binding energies (kcal/mol) for each compound-receptor pair against human orexinergic receptors OX2 (PDB ID: 4S0V) and OX1 (PDB ID: 6V9S), alongside reference ligands Suvorexant (4S0V) and [(2S)-2-[(2S)-butan-2-yl]-4-(5-chloro-1,3-benzoxazol-2-yl)-1,4-diazepan-1-yl][5-methyl-2-(2H-1,2,3-triazol-2-yl)phenyl]methanone (6V9S).
DOI: 10.6084/m9.figshare.24675333.v1
title: Fiscal Multipliers: Japan and US Data for VAR Estimation

description: These datasheets correspond to Krueger (2023) "Quantifying Japanese Fiscal Multipliers: A VAR Approach"
DOI: 10.17632/tcfb5c33xj
title: The Risk Factors for Splenic Hilum Lymph Node Metastasis in Gastric Cancer

description: Meta-analysis of retrospective case control studies about the risk factors for splenic hilum lymph node metastasis in gastric cancer
DOI: 10.17632/yhywgdprm2
title: Studies related to Covid-19 in logistics and supply chain processes (2021-2023)

description: Metadata of the papers related to the impact of Covid-19 on logistics and supply chain processes, published between 2021 and 2023
DOI: 10.21233/b1yr-0k52
title: Lake Biwa, North Basin ostracode surface sample dataset

description: Raw data for the Lake Biwa, North Basin ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.11337716.v1
title: Gut microbiome dynamics of Ruddy turnstones during stopover

description: We sequenced the 16S rRNA gene from fecal samples of Ruddy Turnstone which we collected between May 7-31 in Delaware Bay, DE.
DOI: 10.17632/n2b5snj248
title: Monitoring Binding and Target-search Dynamics of Epigenetic Regulatory Factors Using Live-Cell Single-Molecule Tracking 

description: Table S1: Source data for Figure 4A.
Table S2: Source data for Figure 4B
DOI: 10.17632/x9hc7hf6xd
title: Demoulding behaviour of material jetted surfaces