cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14152570
title: An Arabidopsis gene expression matrix derived from large-scaled RNA-Seq datasets

description: The dataset contains a gene expression matrix to be used with the EXPLICIT package to construct an gene expression predictor. It has 24545 RNA-Seq samples with 38194 genes in total. <br>Two versions of the matrix are provided. It is recommended to use the smaller version first (At.matrix.demo.h5) to get familiar with the EXPLICIT package, and then change to the full version (At.matrix.full.h5). The smaller matrix contains 5000 samples randomly selected from all 24545 samples.<br><br>At.matrix.demo.h5<br>|--expression_log2cpm -------- (5000 samples [row] X 38194 genes [col])<br>|--gene_name ------------------ ( for the 38194 genes)<br>|--rnaseq_id ------------------- (for the 5000 samples)<br>|--idx_tf_gene ------- (specifying TF genes used for model construction)<br>|--idx_target_gene --- (specifying target genes used for model construction)<br>|--independent_samples_for_validation<br> &gt;&gt;&gt;|--expression_log2cpm ------ (2 samples [row] X 38194 genes [col])<br> &gt;&gt;&gt;|--gene_name ----------------- (for the 38194 genes)<br> &gt;&gt;&gt;|--sample_id ---------------- (for the 2 RNA-Seq samples)<br>At.matrix.full.h5<br>|--expression_log2cpm -------- (24545 samples [row] X 38194 genes [col])<br>|--gene_name ------------------ (for the 38194 genes)<br>|--rnaseq_id ------------------- (for the 24545 samples)<br>|--idx_tf_gene ------- (specifying TF genes used for model construction)<br>|--idx_target_gene --- (specifying target genes used for model construction)<br>|--independent_samples_for_validation<br> &gt;&gt;&gt;|--expression_log2cpm ------ (2 samples [row] X 38194 genes [col])<br> &gt;&gt;&gt;|--gene_name ----------------- (for the 38194 genes)<br> &gt;&gt;&gt;|--sample_id ---------------- (for the 2 RNA-Seq samples)
DOI: 10.6084/m9.figshare.14534661
title: Ring1B_kundu_final.bw

description: ring1b bigwig
DOI: 10.6084/m9.figshare.14534661.v1
title: Ring1B_kundu_final.bw

description: ring1b bigwig
DOI: 10.6084/m9.figshare.14534664
title: SUZ12_final.bw

description: suz12 bigwig
DOI: 10.6084/m9.figshare.14534664.v1
title: SUZ12_final.bw

description: suz12 bigwig
DOI: 10.6084/m9.figshare.14534679
title: JARID2_final.bw

description: Jarid2 bigwig
DOI: 10.6084/m9.figshare.14534679.v1
title: JARID2_final.bw

description: Jarid2 bigwig
DOI: 10.6084/m9.figshare.14534607
title: Ezh2_kundu_final.bw

description: Ezh2 bigwig
DOI: 10.6084/m9.figshare.14534607.v1
title: Ezh2_kundu_final.bw

description: Ezh2 bigwig
DOI: 10.6084/m9.figshare.14534613
title: EPOP_final.bw

description: epop bigwig
DOI: 10.6084/m9.figshare.14534613.v1
title: EPOP_final.bw

description: epop bigwig
DOI: 10.6084/m9.figshare.14534622.v1
title: H2AUb_kundu_final.bw

description: H2AKub biwig
DOI: 10.6084/m9.figshare.14534622
title: H2AUb_kundu_final.bw

description: H2AKub biwig
DOI: 10.25345/c59c03
title: MassIVE MSV000087370 - Proteomic profiling of ectosomes derived from paired urothelial bladder cancer and normal cells reveals the presence of biologically-relevant molecules
title: Protein content of extracellular vesicles (EVs) can modulate different processes during carcinogenesis. Novel proteomic strategies have been applied several times to profile proteins present in exosomes released by urothelial bladder cancer (UBC) cells. However, similar studies have not been conducted so far on another population of EVs i.e. ectosomes. In the present study we used a shotgun nanoLC-MS/MS proteomic approach to investigate the protein content of ectosomes released in vitro by T-24 UBC cells and HCV-29 normal ureter epithelial cells. In addition, cancer-promoting effects exerted by UBC-derived ectosomes on non-invasive cells in terms of cell proliferation and migratory properties were assessed. A total of 1158 proteins was identified in T-24-derived ectosomes, while HCV-29-derived ectosomes contained a lower number of 259 identified proteins. Qualitative analysis revealed 938 proteins present uniquely in T-24-derived ectosomes, suggesting their potential applications in bladder cancer management as diagnostic and prognostic biomarkers. Also, T-24-derived ectosomes increased proliferation and motility of recipient cells, likely due to the ectosomal transfer of identified cancer-promoting molecules. The present study provided a focused identification of biologically relevant proteins in UBC-derived ectosomes, confirming their role in UBC development and progression, and their applicability for further biomarker-oriented studies in preclinical or clinical settings.
DOI: 10.5281/zenodo.1284156
title: EigenScape

description: EigenScape is a database of acoustic scenes recorded spatially using the mh Acoustics EigenMike. All scenes were recorded in 4th-order Ambisonics - ACN channel ordering with SN3D normalisation at 24-bit / 48 kHz resolution. The database contains recordings of eight different location classes: Beach Busy Street Park Pedestrian Zone Quiet Street Shopping Centre Train Station Woodland The recordings were made in May 2017 at sites across the North of England. 8 different examples of each location class were recorded over a duration of 10 minutes for 64 recordings in total. The provided metadata file gives more detail on each recording, and the EigenScape recording map (see link below) shows the locations and classes of all the recordings. EigenScape Lite is a condensed version of EigenScape designed for a more lightweight download. This version of the dataset features 1st-order Ambisonic channels only, losslessly compressed to FLAC format. Data recorded by Marc C. Green in May 2017.<br> <strong>If you make use of this database in your work, please cite the accompanying paper: https://www.mdpi.com/2076-3417/7/11/1204</strong><br> <br> <strong>Baseline classifier and segmentation tools: https://github.com/marc1701/EigenScape<br> <br> Recording map: http://bit.ly/EigenSMap<br> <br> Contact: marc1701@gmail.com</strong> <sub>Version 2 of the dataset has different ZIP files, as there was a problem unzipping the original files in macOS. All of the audio is identical.</sub>
DOI: 10.6084/m9.figshare.14399522.v3
title: Analysis of the Seasonal and Interannual Variations of Air-Sea CO2 Flux in the Chukchi Sea Using A Coupled Ocean-Sea Ice-Biogeochemical Model

description: This data set is used in the paper 'Analysis of the Seasonal and Interannual Variations of Air-Sea CO<sub>2</sub> Flux in the Chukchi Sea Using A Coupled Ocean-Sea Ice-Biogeochemical Model'.<br>
DOI: 10.6084/m9.figshare.14534655
title: PCGF1_final.bw

description: PCGF1 bigwig<br>
DOI: 10.6084/m9.figshare.14534655.v1
title: PCGF1_final.bw

description: PCGF1 bigwig<br>
DOI: 10.34808/08md-3095
title: Number of non-cash transactions made with payment cards per capita in EU countries 2015

description: The following data presents the number of non-cash transactions made with payment cards per capita in EU countries 2015.It is an element of the so-called the banking index, which in the subject literature is defined as the number of people actively using services banking.
DOI: 10.34808/9y1f-yz83
title: Total Ionization Cross Sections of Selected Amino Acids

description: The data set contains tabulated values ​​of cross-sections for a single electron-impact ionization of selected amino acids (glycine, alanine, phenylalanine, proline and tryptophan) calculated using binary-encouter-Bethe method. The data have been published in graphical form (figure 1) in the following paperA.M. Sheer, P. Mozejko, G.A. Gallup, P.D. Burrow "Total dissociative electron attachment cross sections of selected amino acids"Journal of Chemical Physics 126 (2007) 174301 (https://doi.org/10.1063/1.2727460)
DOI: 10.6084/m9.figshare.12961646
title: Retrospective study for validation and improvement of numerical treatment planning of irreversible electroporation ablation for treatment of liver tumors

description: Supplementary data for 18 cases of hepatic tumors, treated with percutaneous irreversible electroporation ablation.<br>- segmentation.nii (NIfTI format):Tissue masks, segmented from pre-interventional CECT.<br> - liver_interv.vtk (VTK format):Liver surface model, obtained from pre-interventional CT segmentation, registered to computation domain<br> - tumor_interv.vtk (VTK format):Tumor surface model, obtained from pre-interventional CT segmentation, registered to computation domain<br> - liver_follow_trans.vtk (VTK format):Liver surface model, obtained from 6-week follow-up MRI, registered to computation domain<br> - segmented_lesion_trans.vtk (VTK format):Ablation zone surface model, obtained from 6-week follow-up MRI, registered to computation domain<br> - field400-field900.vtk (VTK format):Computed electric field surfaces obtained by thresholding the volumetric data with 400, 500, 600, 700, 800, 900 V/cm<br>
DOI: 10.6084/m9.figshare.12961646.v1
title: Retrospective study for validation and improvement of numerical treatment planning of irreversible electroporation ablation for treatment of liver tumors

description: Supplementary data for 18 cases of hepatic tumors, treated with percutaneous irreversible electroporation ablation.<br>- segmentation.nii (NIfTI format):Tissue masks, segmented from pre-interventional CECT.<br> - liver_interv.vtk (VTK format):Liver surface model, obtained from pre-interventional CT segmentation, registered to computation domain<br> - tumor_interv.vtk (VTK format):Tumor surface model, obtained from pre-interventional CT segmentation, registered to computation domain<br> - liver_follow_trans.vtk (VTK format):Liver surface model, obtained from 6-week follow-up MRI, registered to computation domain<br> - segmented_lesion_trans.vtk (VTK format):Ablation zone surface model, obtained from 6-week follow-up MRI, registered to computation domain<br> - field400-field900.vtk (VTK format):Computed electric field surfaces obtained by thresholding the volumetric data with 400, 500, 600, 700, 800, 900 V/cm<br>
DOI: 10.6084/m9.figshare.14545875.v1
title: Supplementary Figures and Tables Fatima et al. Gastrointestinal hormones and β-cell function after gastric bypass and sleeve gastrectomy in patients with morbid obesity and type 2 diabetes: a randomized controlled trial (Oseberg Study)

description: <b>Supplementary Figure </b><b>1</b>. Patient flow (page 2) <b>Supplementary Table 1.</b> Baseline characteristics (page 3) <b> </b> <b>Supplementary Figure </b><b>2</b>. Insulin and C-peptide levels during an oral glucose tolerance test (page 4) <b><br></b><b>Supplementary Figure </b><b>3</b>. iAUC<sub>0-8min </sub>ISR, DI <sub>IV peripheral</sub>, and DI <sub>IV hepatic</sub> (page 5)<br> <b>Supplementary Figure </b><b>4</b>. Mediation model (page 6) <b>Supplementary Table 2</b>. Early and late dumping symptoms and/or hypoglycemia during oral glucose tolerance test (page 7)<br>
DOI: 10.6084/m9.figshare.14546133
title: Supplementary Material for: Comparison of Pre-Amputation Evaluation in Patients with and without Chronic Kidney Disease

description: <b><i>Introduction:</i></b> Patients with chronic kidney disease (CKD) and peripheral artery disease (PAD) are more likely to undergo lower extremity amputation than patients with preserved kidney function. We sought to determine whether patients with CKD were less likely to receive pre-amputation care in the 1-year prior to lower extremity amputation compared to patients without CKD. <b><i>Methods:</i></b> We conducted a retrospective observational study of patients with PAD-related lower extremity amputation between January 2014 and December 2017 using a large commercial insurance database. The primary exposure was CKD identified using billing codes and laboratory values. The primary outcomes were receipt of pre-amputation care, defined as diagnostic evaluation (ankle-brachial index, duplex ultrasound, and computed tomographic angiography), specialty care (vascular surgery, cardiology, orthopedic surgery, and podiatry), and lower extremity revascularization in the 1-year prior to amputation. We conducted separate logistic regression models to estimate the adjusted odds ratio (aOR) and 95% confidence intervals (CIs) among patients with and without CKD. We assessed for effect modification by age, sex, Black race, and diabetes status. <b><i>Results:</i></b> We identified 8,554 patients with PAD-related amputation. In fully adjusted models, patients with CKD were more likely to receive diagnostic evaluation (aOR 1.30; 95% CI 1.17–1.44) and specialty care (aOR 1.45, 95% CI 1.27–1.64) in the 1-year prior to amputation. There was no difference in odds of revascularization by CKD status (aOR 1.03, 0.90–1.19). Age, sex, Black race, and diabetes status did not modify these associations. <b><i>Discussion/Conclusion:</i></b> Patients with CKD had higher odds of receiving diagnostic testing and specialty care and similar odds of lower extremity revascularization in the 1-year prior to amputation than patients without CKD. Disparities in access to pre-amputation care do not appear to explain the higher amputation rates seen among patients with CKD.
DOI: 10.6084/m9.figshare.14545875.v2
title: Supplementary Figures and Tables Fatima et al. Gastrointestinal hormones and β-cell function after gastric bypass and sleeve gastrectomy: an RCT (Oseberg)

description: <b>Supplementary Figure </b><b>1</b>. Patient flow (page 2) <b>Supplementary Table 1.</b> Baseline characteristics (page 3) <b> </b> <b>Supplementary Figure </b><b>2</b>. Insulin and C-peptide levels during an oral glucose tolerance test (page 4) <b><br></b><b>Supplementary Figure </b><b>3</b>. iAUC<sub>0-8min </sub>ISR, DI <sub>IV peripheral</sub>, and DI <sub>IV hepatic</sub> (page 5)<br> <b>Supplementary Figure </b><b>4</b>. Mediation model (page 6) <b>Supplementary Table 2</b>. Early and late dumping symptoms and/or hypoglycemia during oral glucose tolerance test (page 7)<br>
DOI: 10.5676/dwd/catrare_t5_eta_v2021.01
title: CatRaRE_T5_Eta_v2021: Catalogues of heavy precipitation events exceeding a return period of 5 years (T5) based on RADKLIM-RW Version 2017.002
title: Parameter and polygons of heavy precipitation events in Germany

description: The catalogues of spatially and temporally independent heavy precipitation events are based on RADKLIM-RW Version 2017.002. The hourly precipitation sums (RW) result from radar-based precipitation estimates on a 1 km x 1 km grid over Germany adjusted to station data. Based on this dataset precipitation sums with 11 different durations (1, 2, 3, 4, 6, 9, 12, 18, 24, 48 and 72 hours) were calculated for each hour. For each duration and hour precipitation objects of adjacent grid boxes were identified, that exceeded a return period of 5 years based on RADKLIM-RW data (T5). From all object that describe the same precipitation event (e.g. an event might exceed the threshold for several durations or in consecutive hours), the one with the highest extremity (Eta, a parameter dependend on return period and spatial extent) was chosen and listed in the catalogue. In a csv-file all events are listed with date and time, duration, return period, geographical location of the precipitation maximum and further parameter. In addition to the .csv tables, each catalogue is available in GIS-Format, permitting the spatial representation of events. All precipitation maxima are represented in a Point Feature Layer and each event’s zone is a part of the Polygon Feature Layer. Each layer contains a complete attribute table, which fully corresponds to the .csv file. Both datasets are availabe as file geodatabase (.gdb) with RADKLIM native polar stereographic projection.
DOI: 10.5517/ccdc.csd.cc228fh9
title: CCDC 1914730: Experimental Crystal Structure Determination

description: Related Article: A. El Janati, Y. Kandri Rodi, Y. Ouzidan, J. Jasinski, M. Kaur, I. Tankov, R. Yankova|2021|CSD Communication|||
DOI: 10.5281/zenodo.3965419
title: KU Leuven Libraries Open access Spectral data of historical paper, parchment/vellum, leather, inks and pigments

description: It is the goal of this project, A. to produce a sufficient number of different spectral measurements on a wide variety of historical paper, parchment/vellum, leather, inks, and pigments media, to fuel the above-sketched procedure. To accomplish this, objects from KU Leuven Libraries Special Collections have been used. In addition, a number of contemporary pieces of parchment and vellum were also selected for the exercise. B. to document extensively which materials have been included in the exercise, i.e. media type, date of media, condition of media, and exact regions of interest (ROI) with specific materials on the media. C. to use the results to develop a color calibration target for the digitisation with still images of library and archive documents (the same procedure can be used to create specific targets for faithful reproduction on other fields such as archaeology pottery studies). D. to publish the acquired spectral data and produced documentation as open data. 01-read me.txt 02-Spectral data (.txt files) 03-Photographic documentation spectral data (.eip, .tif & .jpg files) 04-KU Leuven Libraries Open access Spectral data of historical paper, parchment, vellum, leather, inks and pigments_version1.pdf [documentation report] 05-Visualisation and brief comparison spectral data - Don Williams_4-2021.mp4 06-Visualisation and brief comparison spectral data - Don Williams_4-2021_lower quality.mp4
DOI: 10.5281/zenodo.3965418
title: KU Leuven Libraries Open access Spectral data of historical paper, parchment/vellum, leather, inks and pigments

description: It is the goal of this project, A. to produce a sufficient number of different spectral measurements on a wide variety of historical paper, parchment/vellum, leather, inks, and pigments media, to fuel the above-sketched procedure. To accomplish this, objects from KU Leuven Libraries Special Collections have been used. In addition, a number of contemporary pieces of parchment and vellum were also selected for the exercise. B. to document extensively which materials have been included in the exercise, i.e. media type, date of media, condition of media, and exact regions of interest (ROI) with specific materials on the media. C. to use the results to develop a color calibration target for the digitisation with still images of library and archive documents (the same procedure can be used to create specific targets for faithful reproduction on other fields such as archaeology pottery studies). D. to publish the acquired spectral data and produced documentation as open data. 01-read me.txt 02-Spectral data (.txt files) 03-Photographic documentation spectral data (.eip, .tif & .jpg files) 04-KU Leuven Libraries Open access Spectral data of historical paper, parchment, vellum, leather, inks and pigments_version1.pdf [documentation report] 05-Visualisation and brief comparison spectral data - Don Williams_4-2021.mp4 06-Visualisation and brief comparison spectral data - Don Williams_4-2021_lower quality.mp4
DOI: 10.5281/zenodo.4740081
title: BNT162b2 vaccination in people over 80 years of age induces strong humoral immune responses with cross neutralisation of P.1 Brazilian variant

description: Background: Age is the major risk factor for mortality after SARS-CoV-2 infection and older people have received priority consideration for COVID-19 vaccination. However vaccine responses are often suboptimal in this age group and few people over the age of 80 years were included in vaccine registration trials.<br> <br> Methods: We determined the serological and cellular response to spike protein in 100 people aged 80-96 years at 2 weeks after second vaccination with the Pfizer BNT162b2 mRNA vaccine.<br> <br> Findings: Antibody responses were seen in every donor with high titres in 98%. Spike-specific cellular immune responses were detectable in only 63% and correlated with humoral response. Previous SARS-CoV-2 infection substantially increased antibody responses after one vaccine and antibody and cellular responses remained 28-fold and 3-fold higher respectively after dual vaccination. Post-vaccine sera mediated strong neutralisation of live Victoria (Wuhan-like prototype) infection and although neutralisation titres were reduced 14-fold against the P.1 variant first discovered in Brazil they remained largely effective.<br> <br> Interpretation: These data demonstrate that the mRNA vaccine platform delivers strong humoral immunity in people up to 96 years of age and retains broad efficacy against the P.1 Variant of Concern.
DOI: 10.5281/zenodo.4740080
title: BNT162b2 vaccination in people over 80 years of age induces strong humoral immune responses with cross neutralisation of P.1 Brazilian variant

description: Background: Age is the major risk factor for mortality after SARS-CoV-2 infection and older people have received priority consideration for COVID-19 vaccination. However vaccine responses are often suboptimal in this age group and few people over the age of 80 years were included in vaccine registration trials.<br> <br> Methods: We determined the serological and cellular response to spike protein in 100 people aged 80-96 years at 2 weeks after second vaccination with the Pfizer BNT162b2 mRNA vaccine.<br> <br> Findings: Antibody responses were seen in every donor with high titres in 98%. Spike-specific cellular immune responses were detectable in only 63% and correlated with humoral response. Previous SARS-CoV-2 infection substantially increased antibody responses after one vaccine and antibody and cellular responses remained 28-fold and 3-fold higher respectively after dual vaccination. Post-vaccine sera mediated strong neutralisation of live Victoria (Wuhan-like prototype) infection and although neutralisation titres were reduced 14-fold against the P.1 variant first discovered in Brazil they remained largely effective.<br> <br> Interpretation: These data demonstrate that the mRNA vaccine platform delivers strong humoral immunity in people up to 96 years of age and retains broad efficacy against the P.1 Variant of Concern.
DOI: 10.17028/rd.lboro.14529279
title: Supplementary Materials for 'Fiction, Non-Fiction, and Family Writing: Investigating the Boundaries of Literary Genre'

description: These are supplementary files to a forthcoming paper 'Fiction, Non-Fiction, and Family Writing: Investigating the Boundaries of Literary Genre'. Files include:- The output of a principal components analysis generated using the R package, stylo, showing the 200 most frequently used words from my corpus with no culling. - The output of a cluster analysis generated using the same rules. - A list of the names attributed to works in the study with brief bibliographical information about the source text.
DOI: 10.17028/rd.lboro.14529279.v1
title: Supplementary Materials for 'Fiction, Non-Fiction, and Family Writing: Investigating the Boundaries of Literary Genre'

description: These are supplementary files to a forthcoming paper 'Fiction, Non-Fiction, and Family Writing: Investigating the Boundaries of Literary Genre'. Files include:- The output of a principal components analysis generated using the R package, stylo, showing the 200 most frequently used words from my corpus with no culling. - The output of a cluster analysis generated using the same rules. - A list of the names attributed to works in the study with brief bibliographical information about the source text.
DOI: 10.21227/egdj-vn69
title: IEEESensors-AirifyDataset

description: Dataset used for IEEE Sensors Article:Calibration of CO, NO2 and O3 Using Airify: a Low-Cost Sensor Cluster for Air Quality Monitoring