cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12630581.v1
title: Agnostos-wf test dataset

description: Test dataset for the agnostos-wf (https://github.com/functional-dark-side/agnostos-wf).<br>The dataset consists of 5 TARA Ocean surface samples from the Mediterranean and Red Sea, all within the size fraction of 0.22-1.6 micro-m (archaea and bacteria enriched fraction).<br>Three samples are used to test the DB-creation module:TARA_030_SRF_0.22-1.6_contigs.fastaTARA_031_SRF_0.22-1.6_contigs.fastaTARA_032_SRF_0.22-1.6_contigs.fasta<br>Two samples are used to test the DB-update module:TARA_033_SRF_0.22-1.6_contigs.fastaTARA_034_SRF_0.22-1.6_contigs.fasta<br>Contextual data for the chosen samples can be found in the file: TARA_samples_contextual_data.tsv.gz<br>
DOI: 10.6084/m9.figshare.12630581.v2
title: Agnostos-wf test dataset

description: Test dataset for the agnostos-wf (https://github.com/functional-dark-side/agnostos-wf).<br>The dataset consists of 5 TARA Ocean surface samples from the Mediterranean and Red Sea, all within the size fraction of 0.22-1.6 micro-m (archaea and bacteria enriched fraction).<br>Two samples are used to test the DB-creation module:TARA_032_SRF_0.22-1.6_contigs.fastaTARA_033_SRF_0.22-1.6_contigs.fasta<br>And one sample is used to test the DB-update module:TARA_034_SRF_0.22-1.6_contigs.fasta<br>Contextual data for the chosen samples can be found in the file: TARA_samples_contextual_data.tsv.gz<br>
DOI: 10.6084/m9.figshare.12630527
title: Supplemental Table S4

description: Changes from baseline in the ankle-brachial index following 3 and 6 weeks of treatment.
DOI: 10.6084/m9.figshare.12630512
title: Supplemental Table S3

description: Changes from baseline in popliteal artery hemodynamic indices during reactive hyperemia as assessed using phase-contrast MRI after 3 and 6 weeks of treatment.
DOI: 10.6084/m9.figshare.12630491
title: Supplemental Table S2

description: Changes in scores in the VascuQoL from baseline after 3 and 6 weeks of treatment.
DOI: 10.6084/m9.figshare.12630503
title: Demand_Load

description: The objective of this analysis is the exploratory demand load analysis in Greece and the development of a methodology for short-term load forecasting.
DOI: 10.6084/m9.figshare.12630512.v1
title: Supplemental Table S3

description: Changes from baseline in popliteal artery hemodynamic indices during reactive hyperemia as assessed using phase-contrast MRI after 3 and 6 weeks of treatment.
DOI: 10.6084/m9.figshare.12630503.v2
title: Demand_Load

description: The objective of this analysis is the exploratory demand load analysis in Greece and the development of a methodology for short-term load forecasting.
DOI: 10.6084/m9.figshare.12630482
title: Supplemental Table S1

description: Changes in scores in the SF-36v2 questionnaire from baseline after 3 and 6 weeks of treatment.
DOI: 10.6084/m9.figshare.12630431
title: Supplemental tables for manuscript entitled: "Supervised leg heat therapy improves perceived physical function but does not enhance walking tolerance or vascular unction in patients with peripheral artery disease".

description: Supplemental tables for manuscript entitled: "Supervised leg heat therapy improves perceived physical function but does not enhance walking tolerance or vascular unction in patients with peripheral artery disease".
DOI: 10.6084/m9.figshare.12630431.v1
title: Supplemental tables for manuscript entitled: "Supervised leg heat therapy improves perceived physical function but does not enhance walking tolerance or vascular unction in patients with peripheral artery disease".

description: Supplemental tables for manuscript entitled: "Supervised leg heat therapy improves perceived physical function but does not enhance walking tolerance or vascular unction in patients with peripheral artery disease".
DOI: 10.6084/m9.figshare.12630356
title: HadCM3-M21 Eoi490 surface temperature fields

description: Simulated 1.5 m air temperature (Eoi490.nc) and land and ocean surface temperature (Eoi490_skinTemps.nc) for the mid-Pliocene coupled climate simulations Eoi490, which is described in:<br>Hopcroft et al., Polar amplification of Pliocene climate by elevated trace gas radiative forcing.<br><br>Netcdf format.
DOI: 10.6084/m9.figshare.12630356.v1
title: HadCM3-M21 Eoi490 surface temperature fields

description: Simulated 1.5 m air temperature (Eoi490.nc) and land and ocean surface temperature (Eoi490_skinTemps.nc) for the mid-Pliocene coupled climate simulations Eoi490, which is described in:<br>Hopcroft et al., Polar amplification of Pliocene climate by elevated trace gas radiative forcing.<br><br>Netcdf format.
DOI: 10.6084/m9.figshare.12630347
title: Source files for Figures in "Impact of Atmospheric and Model Physics Perturbations On a High-Resolution Ensemble Data Assimilation System of the Red Sea" [Paper #2019JC015611RR]

description: Source files for figures<br>
DOI: 10.6084/m9.figshare.12630299
title: Juvenile Spider Mites Induce Salicylate Defenses, but Not Jasmonate Defenses, Unlike Adults

description: This data set contains all the data for this publication sorted per table/figure. The title of each data sheet refers to the corresponding table/figure in the publication. The data in this file are processed i.e. for the qPCRs we included the relative expression of the target gene after normalization with the housekeeping gene and as an average of the biological replicates. In some case expression was also normalized for mite survivial in a seperate column but - as indicated in the manuscript - this survival correction had no significant impact on the differeces across treatments (see also methods description in the publication). <br><br><br>
DOI: 10.6084/m9.figshare.12630284
title: CHACUBA - Supplementary Table 4

description: Rsb values for the Canadian, French Charolais breeds and the Chacuba study population
DOI: 10.6084/m9.figshare.12630299.v1
title: Juvenile Spider Mites Induce Salicylate Defenses, but Not Jasmonate Defenses, Unlike Adults

description: This data set contains all the data for this publication sorted per table/figure. The title of each data sheet refers to the corresponding table/figure in the publication. The data in this file are processed i.e. for the qPCRs we included the relative expression of the target gene after normalization with the housekeeping gene and as an average of the biological replicates. In some case expression was also normalized for mite survivial in a seperate column but - as indicated in the manuscript - this survival correction had no significant impact on the differeces across treatments (see also methods description in the publication). <br><br><br>
DOI: 10.6084/m9.figshare.12630284.v2
title: CHACUBA - Supplementary Table 4

description: Rsb values for the Canadian, French Charolais breeds and the Chacuba study population
DOI: 10.6084/m9.figshare.12630284.v1
title: CHACUBA

description: Rsb values for the Canadian, French Charolais breeds and the Chacuba study population
DOI: 10.6084/m9.figshare.12630218
title: Supplementary Material for: Effects of Vitamin D Supplementation on General and Central Obesity: Results from 20 Randomized Controlled Trials Involving Apparently Healthy Populations

description: <b><i>Background:</i></b> The obesity pandemic has been paralleled by a high prevalence of vitamin D deficiency (VDD). There is growing epidemiological evidence linking low vitamin D status with obesity events. In addition, observational studies also show that obesity may increase the risk of VDD. However, there is insufficient knowledge to understand whether there is a causality between the two. Moreover, the impact of vitamin D supplementation on obesity indices has shown inconsistent outcomes. <b><i>Objective:</i></b> This meta-analysis aimed to assess whether vitamin D supplementation modified general and central obesity indices in apparently healthy populations. <b><i>Methods:</i></b> A systematic retrieval of relevant randomized controlled trials (RCTs) was undertaken using Pubmed, Embase, Web of Knowledge and Chinese National Knowledge Infrastructure databases. The pooled weighted mean difference (WMD) and 95% confidence intervals (CI) were used to assess the changes in body mass index (BMI), waist circumference (WC), waist-to-hip ratio (WHR) and 25-hydroxyvitamin D (25[OH]D) from baseline. <b><i>Results:</i></b> Twenty RCTs involving 3,153 participants reporting either BMI, WC, WHR or 25(OH)D met the inclusion criteria. When compared with placebo, vitamin D supplementation had no significant decreases in BMI (WMD = –0.09 kg/m<sup>2</sup>, 95% CI –0.19 to 0.01, <i>p</i> = 0.08), WC (WMD = –0.71 cm, 95% CI –1.58 to 0.16, <i>p</i> = 0.112) or WHR (WMD = 0.00, 95% CI –0.01 to 0.01, <i>p</i> = 0.749). However, in the subgroups of females, Asia region studies and intervention duration ≥6 months, a beneficial and significant reduction in BMI and WC was noted (all <i>p</i> &lt; 0.026). On the other hand, pooled results showed that there was a significant increase in serum 25(OH)D levels (WMD = 13.20 ng/mL, 95% CI 9.83–16.58, <i>p</i> &lt; 0.001) after vitamin D intervention. No publication bias was found in our study. <b><i>Conclusions:</i></b> Overall, supplementation with vitamin D produced no significant effect on the BMI, WC or WHR of healthy adults.
DOI: 10.6084/m9.figshare.12630212
title: Mapping dataset of dissolved oxygen and carbonate system showing autumnal subsurface acidification in the central North Yellow Sea in 2017

description: The North Yellow Sea (NYS) is a shallow-water and semi-enclosed marginal sea of the western North Pacific. Its climatic variations are primarily dominated by the East Asian Monsoon. The rain-bearing southwest monsoon lasts from June to September, while the strong northeast monsoon prevails in winter, from November to March of the following year. In relatively warm seasons, the hydrography across the NYS is characterized by a pronounced cold pool of typically 5−11°C that is overlain by 10−20 m of warm water. It is regarded as the remnant of winter cooling and known as the North Yellow Sea cold water mass, where metabolic CO<sub>2</sub> accumulates every year from spring to autumn. In winter, the NYS surface water tends to be quickly cooled and then submerges into the water column, leading to ventilation over the whole water column of ~80 m. The wintertime air–sea CO<sub>2</sub> equilibration time in the well-mixed NYS water column has been estimated to be 25−100 d, depending on wind speeds.In 2017, three central offshore cruises were carried out in the North Yellow Sea in September, October and late December. During these cruises, depth profiles of temperature and salinity (practical salinity scale of 1978) were acquired with calibrated conductivity-temperature-depth/pressure (CTD) recorders (SBE911 plus or SBE19 plus, Sea-Bird Scientific, USA) onboard the R/V <i>Dongfanghong</i> 2 (10−12 September 2017 and from 30 December 2017 to 2 January 2018) and the R/V <i>Beidou</i> (13−16 October 2017). Water samples for dissolved oxygen (DO) and carbonate parameter analyses were obtained at two to four different depths (including the sea surface and bottom layer) using rosette samplers fitted with 12-L Niskin bottles (General Oceanics, USA), which were mounted with the CTD recorders.<br>Sampling surveys were separately supported by the National Natural Science Foundation of China via Ship-time Sharing projects during the Open Research Cruises conducted in the Bohai and Yellow Seas (onboard R/V <i>Dongfanghong 2</i>) in September and December 2017 (Cruise no. NORC2017-01), and by the Yellow Sea Fisheries Research Institute, the Chinese Academy of Fishery Sciences, via the monitoring project of fishery resources and habitat environment in the Yellow Sea (onboard R/V<i> Beidou</i>, October 2017).
DOI: 10.6084/m9.figshare.12630161
title: Data for Summer School 2020

description: snp for resistant e.coli
DOI: 10.6084/m9.figshare.12630146
title: Big Data

description: Big Data
DOI: 10.6084/m9.figshare.12630107
title: Olive flowering phenology

description: The study was carried out in southern Croatia. During April, May and June of 2019, hundreds of images were collected with stationary cameras in an olive orchard. The images were obtained during multiple days and at all times of the day. This means that they were taken in various lighting conditions. The weather conditions included clear, sunny weather to overcast and cloudy weather.<br>Cameras were set at a distance of 40 to 50 cm from the tree canopy. <br>For the purpose of machine learning, six image patches (256 x 256 pixels) were extracted from the central part of each original image. This ensured a dataset which consisted of 1420 images, showing details of the tree canopies during various phenological stages. With the aid of an expert in this field, the images were classified as 0 or 1, depending on whether the start of the flowering phase was observed. <br><br>Please cite as: <br>Milicevic, M.; Zubrinic, K.; Grbavac, I.; Obradovic, I. Application of Deep Learning Architectures for Accurate Detection of Olive Tree Flowering Phenophase. Remote Sens. 2020, 12, 2120. <br>
DOI: 10.6084/m9.figshare.12630146.v1
title: Big Data

description: Big Data
DOI: 10.6084/m9.figshare.12630101
title: Dissolved oxygen and carbonate system in a southern nearshore marine aquaculture area in the North Yellow Sea in May, June, July, August and September 2017

description: Around the North Yellow Sea, Liaoning and Shandong Provinces in China are involved in fast-developing and highly populated marine aquacultural activities. For example, its southern nearshore waters are occupied by an important mariculture area in Shandong, where the water depth is only 10−21 m. Sea cucumbers <i>Apostichopus japonicus</i>, and scallops <i>Chlamys Farreri</i>, are cultured in this area where summertime hypoxia and pH decline have been observed in 2015 and 2016.<br>From May to September, five southern nearshore surveys (monthly from May to September) were carried out in the North Yellow Sea in 2017. During the nearshore surveys, discrete water samples were collected using a 5-L Niskin bottle at the surface (2 m below sea surface) and 2 m above the seafloor, while depth profiles of temperature and salinity (practical salinity scale of 1978) were determined using a calibrated RBR profiler (RBR Ltd., Canada). <br>Sampling surveys were supported by the Yantai Institute of Coastal Zone Research, the Chinese Academy of Sciences, via the Strategic Priority Research Program of the Chinese Academy of Sciences (grant no. XDA11020702).<br>
DOI: 10.6084/m9.figshare.12630107.v1
title: Olive flowering phenology

description: The study was carried out in southern Croatia. During April, May and June of 2019, hundreds of images were collected with stationary cameras in an olive orchard. The images were obtained during multiple days and at all times of the day. This means that they were taken in various lighting conditions. The weather conditions included clear, sunny weather to overcast and cloudy weather.<br>Cameras were set at a distance of 40 to 50 cm from the tree canopy. <br>For the purpose of machine learning, six image patches (256 x 256 pixels) were extracted from the central part of each original image. This ensured a dataset which consisted of 1420 images, showing details of the tree canopies during various phenological stages. With the aid of an expert in this field, the images were classified as 0 or 1, depending on whether the start of the flowering phase was observed. <br><br>Please cite as: <br>Milicevic, M.; Zubrinic, K.; Grbavac, I.; Obradovic, I. Application of Deep Learning Architectures for Accurate Detection of Olive Tree Flowering Phenophase. Remote Sens. 2020, 12, 2120. <br>
DOI: 10.6084/m9.figshare.12630038
title: AccessibleData.xlsx

description: During the current scenario of COVID-19 pandemic, other common pathogens testing results were illustrated in this dataset..
DOI: 10.6084/m9.figshare.12630038.v1
title: AccessibleData.xlsx

description: During the current scenario of COVID-19 pandemic, other common pathogens testing results were illustrated in this dataset..
DOI: 10.5522/04/12629918
title: Scalar Transport in arrays of cylinders

description: These directories contain the data sets and Matlab scripts required to generate figures 3, 4 and 6 in the article "The transfer and transport of a passive scalar within an isolated array of circular cylinders in a uniform flow" which is under review for Water Resources Research.<br>
DOI: 10.5522/04/12629918.v1
title: Scalar Transport in arrays of cylinders

description: These directories contain the data sets and Matlab scripts required to generate figures 3, 4 and 6 in the article "The transfer and transport of a passive scalar within an isolated array of circular cylinders in a uniform flow" which is under review for Water Resources Research.<br>
DOI: 10.6084/m9.figshare.12629885
title: The assembled transcriptome of the tidal reeds and freshwater reeds in the Yellow River Delta responding to salt stress

description: Transcriptome assemblyWe used Trinity software for transcriptome assembly. The basic process of assembly is shown in the following link: http://trinityrnaseq.github.io .The results of transcriptional assembly were as follows:1.Trinity.fasta: FASTA sequences of Trinity assembly2.cluster_ all.fasta: The sequence obtained by removing redundancy in the TRINITY.fasta by corset clustering.3.unigene.fasta: Select the longest transcript of each gene from the cluster_ all.fasta to store in FASTA format as a unigene of the gene.4.Sampled_ trinity.fasta: Some examples of Trinity.fasta sequence, and the format of the sequence is the same as the Trinity.fasta.5.Sampled_ cluster_ all.fasta: Some examples of Clusters_ all.fasta sequence, and the format of the sequence is the same as the cluster_ all.fasta.6.Sampled_ unigene.fasta: Some examples of the unigene.fasta sequence, and the format of the sequence is the same as the unigene.fasta.
DOI: 10.6084/m9.figshare.12629909
title: Dynamics of Energetic Electrons in the Slot Region during Geomagnetically Quiet Times: Losses due to Wave-Particle Interactions versus a Source from Cosmic Ray Albedo Neutron Decay (CRAND)

description: This is a dataset created to reproduce the figures in the paper submitted to Journal of Geophysical Research Space Physics. The title of the paper is 'Dynamics of energetic electrons in the slot region during geomagnetically quiet times: losses due to wave-particle interactions versus a source from cosmic ray albedo neutron decay (CRAND)‘.
DOI: 10.6084/m9.figshare.12629882
title: CoxL Phylogenies

description: CoxL_pf01315_Hik_ref: CoxL phylogeny including Hikarchaeia paralogs with the Pfam domain `PF01315'.<br>CoxL_pf01315_all_ref: Extended PF01315 domain phylogeny.<br>
DOI: 10.6084/m9.figshare.12629909.v1
title: Dynamics of Energetic Electrons in the Slot Region during Geomagnetically Quiet Times: Losses due to Wave-Particle Interactions versus a Source from Cosmic Ray Albedo Neutron Decay (CRAND)

description: This is a dataset created to reproduce the figures in the paper submitted to Journal of Geophysical Research Space Physics. The title of the paper is 'Dynamics of energetic electrons in the slot region during geomagnetically quiet times: losses due to wave-particle interactions versus a source from cosmic ray albedo neutron decay (CRAND)‘.
DOI: 10.6084/m9.figshare.12629882.v1
title: CoxL Phylogenies

description: CoxL_pf01315_Hik_ref: CoxL phylogeny including Hikarchaeia paralogs with the Pfam domain `PF01315'.<br>CoxL_pf01315_all_ref: Extended PF01315 domain phylogeny.<br>
DOI: 10.6084/m9.figshare.12629870
title: Comparative transcriptome analysis during seeds development between two soybean cultivars

description: The GO and KEGG of different expression genes in soybeans seeds. The stages of seed development were separated into 2 WAF, 4 WAF and 6 WAF.
DOI: 10.6084/m9.figshare.12629855
title: B19

description: Blood specimens were collected to detect the frequency of B19V IgG and IgM antibodies among apparently healthy pregnant women attending antenatal care units in Khartoum state, Sudan
DOI: 10.6084/m9.figshare.12629870.v1
title: Comparative transcriptome analysis during seeds development between two soybean cultivars

description: The GO and KEGG of different expression genes in soybeans seeds. The stages of seed development were separated into 2 WAF, 4 WAF and 6 WAF.
DOI: 10.6084/m9.figshare.12629885.v1
title: The Assembled Transcriptome of tidal reed and freshwater reeds in Yellow River Delta responding to salt stress

description: Transcriptome assemblyWe use Trinity software for transcriptome assembly. The basic process of assembly is shown in the following linkhttp://trinityrnaseq.github.ioThe results of transcriptional assembly were as follows:1. Trinity.fasta FASTA sequences of Trinity assembly2.cluster_ all.fasta TRINITY.fasta The sequence obtained by removing redundancy by corset clusteringThree unigene.fasta Select cluster_ all.fasta The longest transcript of each gene is stored in FASTA format as a UniGene of the gene4.Sampled_ trinity.fasta part Trinity.fasta Sequence, format and Trinity.fasta The same.5.Sampled_ cluster_ all.fasta Some clusters_ all.fasta Sequence, format and cluster_ all.fasta The same.6.Sampled_ unigene.fasta part unigene.fasta Sequence, format and unigene.fasta The same.
DOI: 10.6084/m9.figshare.12629855.v1
title: B19

description: Blood specimens were collected to detect the frequency of B19V IgG and IgM antibodies among apparently healthy pregnant women attending antenatal care units in Khartoum state, Sudan
DOI: 10.6084/m9.figshare.12629885.v2
title: The Assembled Transcriptome of tidal reed and freshwater reeds in Yellow River Delta responding to salt stress

description: Transcriptome assemblyWe used Trinity software for transcriptome assembly. The basic process of assembly is shown in the following link: http://trinityrnaseq.github.io .The results of transcriptional assembly were as follows:1.Trinity.fasta: FASTA sequences of Trinity assembly2.cluster_ all.fasta: The sequence obtained by removing redundancy in the TRINITY.fasta by corset clustering.3.unigene.fasta: Select the longest transcript of each gene from the cluster_ all.fasta to store in FASTA format as a unigene of the gene.4.Sampled_ trinity.fasta: Some examples of Trinity.fasta sequence, and the format of the sequence is the same as the Trinity.fasta.5.Sampled_ cluster_ all.fasta: Some examples of Clusters_ all.fasta sequence, and the format of the sequence is the same as the cluster_ all.fasta.6.Sampled_ unigene.fasta: Some examples of the unigene.fasta sequence, and the format of the sequence is the same as the unigene.fasta.
DOI: 10.6084/m9.figshare.12629885.v4
title: The assembled transcriptome of the tidal reeds and freshwater reeds in the Yellow River Delta responding to salt stress

description: Transcriptome assemblyWe used Trinity software for transcriptome assembly. The basic process of assembly is shown in the following link: http://trinityrnaseq.github.io .The results of transcriptional assembly were as follows:1.Trinity.fasta: FASTA sequences of Trinity assembly2.cluster_ all.fasta: The sequence obtained by removing redundancy in the TRINITY.fasta by corset clustering.3.unigene.fasta: Select the longest transcript of each gene from the cluster_ all.fasta to store in FASTA format as a unigene of the gene.4.Sampled_ trinity.fasta: Some examples of Trinity.fasta sequence, and the format of the sequence is the same as the Trinity.fasta.5.Sampled_ cluster_ all.fasta: Some examples of Clusters_ all.fasta sequence, and the format of the sequence is the same as the cluster_ all.fasta.6.Sampled_ unigene.fasta: Some examples of the unigene.fasta sequence, and the format of the sequence is the same as the unigene.fasta.