cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.91303.v2
title: Osmia emerging time

description: <em>Osmia cornifrons</em> was imported from Japan in 1976 to Maryland, US, for orchard pollination and since then is expanded to almost all Eastern US. Their impacts on native species are unknown. The invader <em>O. cornifrons</em> and the native <em>Osmia lignaria</em> <em>lignaria</em> have now a very similar distribution, they have a similar biology and nest in the same nest structures. Niche overlap may lead to competition between both species. Here, I analyzed the phenological overlap of <em>O. cornifrons</em> with the native species <em>O. lignaria</em> at Hutchington Memorial Forest, New Jersey, USA. I monitored 125 cocoons of each species that wintered exposed to the same natural conditions. Emergence of both species was monitored along 35 days during spring 2011. As showed in the figure, the invader,<em> O. cornifrons</em>, emerged earlier than the native bee (Cox survival analysis: z = -4.9; p &lt; 0.001). I speculate that this can give to the invader an advantage when choosing nesting sites, but at the same time could increase the risk of the invader to late spring frosts.
DOI: 10.6084/m9.figshare.91294.v1
title: isotopic-shift-t-02.dat

description: 16O -&gt; 18O isotopic shift (as defined in J. Sup. Nov. Mag. 20, 603) for a model O-Cu-O cluster with an electron hopping of t=0.5eV This is part of my attempt to reproduce J. Sup. Nov. Mag. 20, 603. Nothing new here
DOI: 10.6084/m9.figshare.91295.v1
title: isotopic-shift-t-05.dat

description: 16O -&gt; 18O isotopic shift (as defined in J. Sup. Nov. Mag. 20,603) for a model O-Cu-O cluster with an electron hopping of t=0.5eV This is part of my attempt to reproduce J. Sup. Nov. Mag. 20, 603. Nothing new here
DOI: 10.6084/m9.figshare.91273.v1
title: 3170b fluorescense.tif

description: Fluorescent microscope image of growth lines in an <em>Unio</em> shell.
DOI: 10.6084/m9.figshare.91246
title: Lab_5_Data.xls

description: The goal of this experiment was to construct a RC circuit and investigate the relationship between the resistance and capacitance of the resistor and capacitor circuit and resulting frequency for the peak voltage across the resistor. The circuit was constructed on a proto board with a 0.1 µF capacitor and and 1MΩ resistor. A function generater was utilized to generate a current of varying frequencies and a DAQ was then used to measure the voltage across the resistor. The data from the DAQ was processed by a VI I created in LabView. This data file contains the data generated as well as graphs showing both voltage vs frequence and power vs frequency. The data from the DAQ was not convereted to volts but is rather still in bit format. This still enables one to view the correlation between frequency and voltage.
DOI: 10.6084/m9.figshare.91210
title: FTIR spectra DDW, DI D2O 2-22-2012

description: FTIR spectroscopy 2-22-2012: Scanned three samples of DDW, each opened on a different date (9/6/2011, 1/17/2012, and 2/16/2012). We expected to see a difference because of possible atmospheric absorption of D2O. What we found was they were all pretty much the same. Scanned the four types of DI water Anthony is currently using in his current DDW5 experiment (see link). The four types of DI water are: 1) DI from the Easypure RoDI (Thermohe) machine in our lab, CHTM's DI, Sigma molecular biology grade water, and Sigma double purified water. The results are surprising. Scanned two samples of D2O one from a newly opened bottle (2/16/2012) and another from a much earlier opened bottle (11/1/2011). See my blog for a complete discussion about the process and the results.
DOI: 10.6084/m9.figshare.91246.v2
title: Lab_5_Data.xls

description: The goal of this experiment was to construct a RC circuit and investigate the relationship between the resistance and capacitance of the resistor and capacitor circuit and resulting frequency for the peak voltage across the resistor. The circuit was constructed on a proto board with a 0.1 µF capacitor and and 1MΩ resistor. A function generater was utilized to generate a current of varying frequencies and a DAQ was then used to measure the voltage across the resistor. The data from the DAQ was processed by a VI I created in LabView. This data file contains the data generated as well as graphs showing both voltage vs frequence and power vs frequency. The data from the DAQ was not convereted to volts but is rather still in bit format. This still enables one to view the correlation between frequency and voltage.
DOI: 10.6084/m9.figshare.91210.v1
title: FTIR spectra DDW, DI D2O 2-22-2012

description: FTIR spectroscopy 2-22-2012: Scanned three samples of DDW, each opened on a different date (9/6/2011, 1/17/2012, and 2/16/2012). We expected to see a difference because of possible atmospheric absorption of D2O. What we found was they were all pretty much the same. Scanned the four types of DI water Anthony is currently using in his current DDW5 experiment (see link). The four types of DI water are: 1) DI from the Easypure RoDI (Thermohe) machine in our lab, CHTM's DI, Sigma molecular biology grade water, and Sigma double purified water. The results are surprising. Scanned two samples of D2O one from a newly opened bottle (2/16/2012) and another from a much earlier opened bottle (11/1/2011). See my blog for a complete discussion about the process and the results.
DOI: 10.6084/m9.figshare.91172
title: Vibrio tubiashii RE22 annotated contiguous sequences

description: <em>V. tubiashii</em> sequences matched to UniProt/SwissProt identifiers using the BLASTx algorithm. Results limited to sequences with top BLAST hit e-values of less than or equal to 1e-05 and greater than 20x coverage.
DOI: 10.6084/m9.figshare.91246.v1
title: Lab_5_Data.xls

description: The goal of this experiment was to construct a RC circuit and investigate the relationship between the resistance and capacitance of the resistor and capacitor circuit and resulting frequency for the peak voltage across the resistor. The circuit was constructed on a proto board with a 0.1 µF capacitor and and 1MΩ resistor. A function generater was utilized to generate a current of varying frequencies and a DAQ was then used to measure the voltage across the resistor. The data from the DAQ was processed by a VI I created in LabView. This data file contains the data generated as well as graphs showing both voltage vs frequence and power vs frequency. The data from the DAQ was not convereted to volts but is rather still in bit format. This still enables one to view the correlation between frequency and voltage.
DOI: 10.6084/m9.figshare.91173
title: Vibrio tubiashii ATCC19106 annotated contiguous sequences

description: <em>V. tubiashii</em> sequences matched to UniProt/SwissProt identifiers using the BLASTx algorithm. Results limited to sequences with top BLAST hit e-values of less than or equal to 1e-05 and greater than 20x coverage.
DOI: 10.6084/m9.figshare.91217.v1
title: Power_vs_frequency.xls

description: This is a plot of Peak to Peak Voltage vs Frequency for an undergraduate physics lab on electronics. The data for the Peak to Peak Voltage was obtained using a LabVIEW VI which acquired data from an RC circuit (composed of a 100KOhm resistor, a 0.1 microFarad, oscilloscope, and MCC DAQ card on a protoboard) as the frequency was changed from a function generator.
DOI: 10.6084/m9.figshare.91171
title: Vibrio tubiashii RE22 virulence associated contiguous sequences

description: <em>V. tubiashii</em> sequences matched to GO identifiers with putative bacterial virulence. Results limited to sequences with top BLAST hit e-values of less than or equal to 1e-05 and greater than 20x coverage.
DOI: 10.6084/m9.figshare.91169
title: Tobacco Seeds Grown in 66% D2O in DDW Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in 66% D2O mixed with ddw. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91169.v1
title: Tobacco Seeds Grown in 66% D2O in DDW Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in 66% D2O mixed with ddw. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91172.v1
title: Vt consensus RE22unique sequences GO genes.xlsx

description: Putative <em>V. tubiashii</em> genes unique to strain RE22 compared to ATCC19106.
DOI: 10.6084/m9.figshare.91173.v1
title: Vt consensus 19106unique sequenc GO genes.xlsx

description: de novo assembly of V. tubiashii strain ATCC19106
DOI: 10.6084/m9.figshare.91171.v1
title: Vt consensus sequences shared GO genes.xlsx

description: Shared putative genes from <em>V. tubiashii</em> strains RE22 and ATCC 19106 using de novo assemblies.
DOI: 10.6084/m9.figshare.91172.v2
title: Vt consensus RE22unique sequences GO genes.xlsx

description: Putative <em>V. tubiashii</em> genes unique to strain RE22 compared to ATCC19106. BLAST results filtered for e-values less than or equal to 1e-05.
DOI: 10.6084/m9.figshare.91168
title: Tobacco Seeds Grown in 33% D2O in DDW Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in 33% D2O mixed with deuterium depleted water. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91172.v4
title: Vibrio tubiashii RE22 annotated contiguous sequences

description: <em>V. tubiashii</em> sequences matched to UniProt/SwissProt identifiers using the BLASTx algorithm. Results limited to sequences with top BLAST hit e-values of less than or equal to 1e-05 and greater than 20x coverage.
DOI: 10.6084/m9.figshare.91173.v2
title: Vt consensus 19106unique sequenc GO genes.xlsx

description: <em>de novo</em> assembly of <em>V. tubiashii</em> strain ATCC19106. BLAST results filtered for e-values less than or equal to 1e-05.
DOI: 10.6084/m9.figshare.91168.v1
title: Tobacco Seeds Grown in 33% D2O in DDW Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in 33% D2O mixed with deuterium depleted water. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91172.v3
title: Vt RE22 annotated sequences

description: Annotated sequences of<em> </em><em>V. tubiashii</em> strain RE22<em> de novo</em> assembly. Top gene hits from BLAST results filtered for e-values less than or equal to 1e-05.
DOI: 10.6084/m9.figshare.91173.v4
title: Vibrio tubiashii ATCC19106 annotated contiguous sequences

description: <em>V. tubiashii</em> sequences matched to UniProt/SwissProt identifiers using the BLASTx algorithm. Results limited to sequences with top BLAST hit e-values of less than or equal to 1e-05 and greater than 20x coverage.
DOI: 10.6084/m9.figshare.91173.v3
title: Vt 19106 annotated sequences

description: Annotated sequences of<em> </em><em>V. tubiashii</em> strain ATCC19106<em> de novo</em> assembly. Top gene hits from BLAST results filtered for e-values less than or equal to 1e-05.
DOI: 10.6084/m9.figshare.91165
title: Tobacco Seeds Grown in 33% D2O Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in 33% D2O mixed with DI Water. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91166
title: Tobacco Seeds Grown in 66% D2O Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in 66% D2O mixed with DI Water. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91167
title: Tobacco Seeds Grown in 99% D2O Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in 99% D2O. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91171.v2
title: Vt consensus sequences shared GO genes.xlsx

description: Putative shared genes from <em>V. tubiashii</em> strains RE22 and ATCC 19106 using de novo assemblies. BLAST results filtered for e-values less than or equal to 1e-05.
DOI: 10.6084/m9.figshare.91167.v1
title: Tobacco Seeds Grown in 99% D2O Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in 99% D2O. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91171.v3
title: VtRE22 sequences with putative virulence

description: <em>V. tubiashii</em> sequences matched to GO identifiers with putative bacterial virulence. Results limited to sequences with top BLAST hit e-values of less than or equal to 1e-05 and greater than 20x coverage.
DOI: 10.6084/m9.figshare.91165.v1
title: Tobacco Seeds Grown in 33% D2O Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in 33% D2O mixed with DI Water. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91166.v2
title: Tobacco Seeds Grown in 66% D2O Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in 66% D2O mixed with DI Water. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91171.v5
title: Vibrio tubiashii RE22 virulence associated contiguous sequences

description: <em>V. tubiashii</em> sequences matched to GO identifiers with putative bacterial virulence. Results limited to sequences with top BLAST hit e-values of less than or equal to 1e-05 and greater than 20x coverage.
DOI: 10.6084/m9.figshare.91163
title: Tobacco Seeds Grown in DI Water Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91164
title: Tobacco Seeds Grown in DDW Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in deuterium depleted water. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91166.v1
title: Tobacco Seeds Grown in DI Water Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in 66% D2O mixed with DI Water. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91171.v4
title: Vibrio tubiashii RE22 contiguous sequences with putative virulence

description: <em>V. tubiashii</em> sequences matched to GO identifiers with putative bacterial virulence. Results limited to sequences with top BLAST hit e-values of less than or equal to 1e-05 and greater than 20x coverage.
DOI: 10.6084/m9.figshare.91160
title: Power vs Freq data.xlsx

description: The excel file is the data points of frequency, voltage peak to peak difference and power. The graph is of power versus frequency.
DOI: 10.6084/m9.figshare.91160.v1
title: Power vs Freq data.xlsx

description: The excel file is the data points of frequency, voltage peak to peak difference and power. The graph is of power versus frequency.
DOI: 10.6084/m9.figshare.91164.v1
title: Tobacco Seeds Grown in DDW Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment with tobacco seeds grown in deuterium depleted water. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91153
title: Responses: which online services do you use?

description: Preliminary result from researchpages user survey - what online services do you currently use? 41 responses. Mostly contract researchers and lecturers (not many PhD students) and mostly in physical/chemical Environmental Sciences. Key result - most respondants have never heard of most science-specific online services, and these guys are users of one (http://researchpages.net)! There's a long way to go...
DOI: 10.6084/m9.figshare.91163.v2
title: Tobacco Seeds Grown in DI Water Trial 2: Failed Experiment

description: This is the second trial in the Repeating Crumley Experiment. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91153.v1
title: Responses: which online services do you use?

description: Preliminary result from researchpages user survey - what online services do you currently use? 41 responses. Mostly contract researchers and lecturers (not many PhD students) and mostly in physical/chemical Environmental Sciences. Key result - most respondants have never heard of most science-specific online services, and these guys are users of one (http://researchpages.net)! There's a long way to go...
DOI: 10.6084/m9.figshare.91163.v1
title: Repeating Crumley Trial 2: Failed Experimental Data (DI Water)

description: This is the second trial in the Repeating Crumley Experiment. This experiment was a failed experiment due to an issue with the building heating and cooling system. Plant seeds grew in inconsistent manners and stopped growing after a couple days. Links to relevant information is shown below including, experimental background, products, and daily notes.
DOI: 10.6084/m9.figshare.91145
title: Correlations among network and community structure metrics

description: Kerri Crawford, now a postdoc at Washington University St. Louis, and I were writing a paper about correlations among network and community structures - an attempt to think more explicitly about these two fields. We include our paper that we submitted to Oikos, and was rejected. Upon further thinking about this, I don't know if the paper even makes sense! Figure captions: Figure 1. Correlations among network structural properties (ordinate) and species richness (abscissa) for animals and plants. Plant-pollinator (empty circles) and plant-seed disperser (filled circles) mutualistic networks are represented. Network structures: number of links (a,b), links per species (c,d), nestedness (e,f), and connectance (g,h; see Table 1 for definitions). Values in each panel represent Pearson correlation coefficients, and p-values (H<sub>o</sub>, <em>r</em> = 0). All variables were log<sub>10</sub> transformed prior to analysis. Note that all variables are displayed as log<sub>10</sub> transformed. Sample sizes: species richness (58-59 communities); evenness (20 communities). Data from the Interaction Web Database (http://www.nceas.ucsb.edu/interactionweb/), and Rezende <em>et al</em>. (2007). Figure 2. Correlations among network structural properties (ordinate) and evenness (abscissa) for animals and plants. Evenness (Pielou’s J) is constrained between zero and one. Larger values of J represent communities with abundance spread more equally among species, whereas small J values represent the presence of few very abundant species. See Figure 1 caption for details on figures. Figure 3. Correlations among network structural properties (ordinate) and mean and standard deviation of the log normal distribution fit to abundance data for each community (abscissa) for animals. See Figure 1 caption for details on figures, and Appendix 1 for abundance distribution model results. Figure 4. Correlations among network structural properties (ordinate) and mean and standard deviation of the log normal distribution fit to abundance data for each community (abscissa) for plants. See Figure 1 caption for details on figures, and Appendix 1 for abundance distribution model results.
DOI: 10.6084/m9.figshare.91147
title: Ruminant Outlines

description: Digitised snout profile outlines for a large sample of extant ruminants. All specimens are from the Zoology Department at the Natural History Museum, London. Scales are not present, as the intention was to analyse the geometry independent of the size variable.