cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5979745.v1
title: Eutrophication in aquatic ecosystems: a scientometric study

description: Abstract Aim: Reveal the direction for future studies about eutrophication, or even reveal the preoccupation among the scientific community about this environmental problem. With a systematic synthesis of eutrophication studies, scientists may be able to understand the state of the literature on aquatic ecosystems around the world. This study intends to identify the main factors used to control algal blooms and the eutrophication process, the countries and environments which have more research about this theme or even identify the articles’ subjects in different periods (e.g.: Experimental, theoretic, monitoring, conservation). Methods We analyzed all studies published in the Thomson ISI Web of Science on both eutrophication and phytoplankton between 2001 and 2016. Results During the period analyzed, we observed an increase in concern about this subject. Authors from institutions in the USA and China wrote most of the studies. The most important geographic and socioeconomic aspects to determine the publication number were total area and HDI respectively. However, the main determinant for the publication about this subject was international collaboration. Some of the most actual themes in ecology and conservation (e.g.: functional groups, climate change, experiment, perdition models, regional scales, invasive species) were addressed in the studies analysed. Invasive species such as Tilapia and Cylindrospermopsis raciborskii were the most cited species on these keywords. Conclusion Despite the current issues addressed in the studies on phytoplankton and eutrophication, some subjects, such as climate change or spatial pattern, were only common in years more recent. Even though studies focusing in functional diversity are highly relevant for conservation, they were not common in any year studied. The major determinant factor related to the increasing in eutrophication knowledge was the international collaboration
DOI: 10.6084/m9.figshare.5979739
title: DNA damage and postural balance in multiple sclerosis patients

description: Abstract Introduction: Multiple Sclerosis (MS) is a chronic inflammatory disease characterized by infiltration of inflammatory cells on the Central Nervous System (CNS). There is evidence that cumulative DNA damage can contribute to various mechanisms underlying MS lesions. Changes in postural balance are frequent observations in subjects with MS. Objective: Evaluated the DNA damage index (DDI)) and postural balance in patients with MS. Methods: A case-control study was conducted with 28 subjects matched for sex, age, and body mass index, divided into MS group and control. The DDI was assessed by comet assay and postural balance through recording the body oscillations of the center of pressure (COP), in the anterior-posterior and lateral middle directions. Results: Showed higher DDI in MS patients (21.3 ± 4.8) than controls (7.9 ± 6.1). Significant differences between groups were also noted in postural control parameters. The wider ranges of postural sway were observed in the MS group. The associations between DDI and postural control parameters showed weak, but significant correlations. No associations were found between DDI and time of diagnosis of MS. Conclusion: People with MS had higher DDI and larger body oscillations than healthy individuals.
DOI: 10.6084/m9.figshare.5979739.v1
title: DNA damage and postural balance in multiple sclerosis patients

description: Abstract Introduction: Multiple Sclerosis (MS) is a chronic inflammatory disease characterized by infiltration of inflammatory cells on the Central Nervous System (CNS). There is evidence that cumulative DNA damage can contribute to various mechanisms underlying MS lesions. Changes in postural balance are frequent observations in subjects with MS. Objective: Evaluated the DNA damage index (DDI)) and postural balance in patients with MS. Methods: A case-control study was conducted with 28 subjects matched for sex, age, and body mass index, divided into MS group and control. The DDI was assessed by comet assay and postural balance through recording the body oscillations of the center of pressure (COP), in the anterior-posterior and lateral middle directions. Results: Showed higher DDI in MS patients (21.3 ± 4.8) than controls (7.9 ± 6.1). Significant differences between groups were also noted in postural control parameters. The wider ranges of postural sway were observed in the MS group. The associations between DDI and postural control parameters showed weak, but significant correlations. No associations were found between DDI and time of diagnosis of MS. Conclusion: People with MS had higher DDI and larger body oscillations than healthy individuals.
DOI: 10.6084/m9.figshare.5979736
title: Pennation angle of vastus laterallis during isometric contractions performed at two knee angles

description: Abstract Introduction: The pennation angle (PA) of a muscle is not static value, but it adapts to the conditions imposed by the contraction intensity required. Objective: This study investigates the effect of knee angle (KA) and intensity of contraction (IC) on PA of vastus lateralis (VL). Methods: Eight women and nine men executed isometric torques lasting 5s at the maximal voluntary contraction (MVC), 25%, 50% and 75% of MVC, on an isokinetic dynamometer with the KA at 90° and 120° (full extension = 180°). The PA was measured in each test, and with the subject relaxed. The effect of IC on PA was tested by means of repeated measures ANOVA and effect size (ES), and of the KA on PA by paired t test, employed on each IC, together with the statistics: intraclass correlation (ICC), standard error of measurement (SEM) and ES, all calculated with the PAs measured at both KAs. Results: The PA increased significantly and successively with the IC (p &lt; 0.05; ES between 1.11 and 3.04), but was not influenced by KA (p &gt; 0.05; ICC between 0.70 and 0.81; SEM between 0.7° and 1.4°; ES between 0.02 and 0.2). Conclusion: The successive increase of PA with the IC supports the existence of relation between these variables. While studies advocate the effect of PA on joint angle this was not observed in this study, probable because the 30o of between KA difference employed was not enough to provide change in PA.
DOI: 10.6084/m9.figshare.5979736.v1
title: Pennation angle of vastus laterallis during isometric contractions performed at two knee angles

description: Abstract Introduction: The pennation angle (PA) of a muscle is not static value, but it adapts to the conditions imposed by the contraction intensity required. Objective: This study investigates the effect of knee angle (KA) and intensity of contraction (IC) on PA of vastus lateralis (VL). Methods: Eight women and nine men executed isometric torques lasting 5s at the maximal voluntary contraction (MVC), 25%, 50% and 75% of MVC, on an isokinetic dynamometer with the KA at 90° and 120° (full extension = 180°). The PA was measured in each test, and with the subject relaxed. The effect of IC on PA was tested by means of repeated measures ANOVA and effect size (ES), and of the KA on PA by paired t test, employed on each IC, together with the statistics: intraclass correlation (ICC), standard error of measurement (SEM) and ES, all calculated with the PAs measured at both KAs. Results: The PA increased significantly and successively with the IC (p &lt; 0.05; ES between 1.11 and 3.04), but was not influenced by KA (p &gt; 0.05; ICC between 0.70 and 0.81; SEM between 0.7° and 1.4°; ES between 0.02 and 0.2). Conclusion: The successive increase of PA with the IC supports the existence of relation between these variables. While studies advocate the effect of PA on joint angle this was not observed in this study, probable because the 30o of between KA difference employed was not enough to provide change in PA.
DOI: 10.6084/m9.figshare.5979724
title: Theoretical ribosomal protein mass fingerprint of Dictyostelium discoideum

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Dictyostelium discoideum.<br></i><br>
DOI: 10.6084/m9.figshare.5979724.v1
title: Theoretical ribosomal protein mass fingerprint of Dictyostelium discoideum

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Dictyostelium discoideum.<br></i><br>
DOI: 10.6084/m9.figshare.5979718
title: Theoretical ribosomal protein mass fingerprint of Plasmodium falciparum

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Plasmodium falciparum</i>.<br>
DOI: 10.6084/m9.figshare.5979718.v1
title: Theoretical ribosomal protein mass fingerprint of Plasmodium falciparum

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Plasmodium falciparum</i>.<br>
DOI: 10.6084/m9.figshare.5979658
title: MSc Thesis

description: This is where all data for my masters project is held.
DOI: 10.6084/m9.figshare.5979658.v1
title: MSc Thesis

description: This is where all data for my masters project is held.
DOI: 10.6084/m9.figshare.5979646
title: GUADMEPI.SOL.2018.3.xlsx

description: Dataset for DM Epi in Solola
DOI: 10.6084/m9.figshare.5979646.v1
title: GUADMEPI.SOL.2018.3.xlsx

description: Dataset for DM Epi in Solola
DOI: 10.6084/m9.figshare.5979625
title: BCS Lecture March 2018 - Blockchain v3.pptx

description: Presentation by Drs Ali Al-Sherbaz and Scott Turner given at BCS Northampton meeting 13/3/2018 on Blockchain.
DOI: 10.6084/m9.figshare.5979625.v2
title: BCS Lecture March 2018 - Blockchain v3.pptx

description: Presentation by Drs Ali Al-Sherbaz and Scott Turner given at BCS Northampton meeting 13/3/2018 on Blockchain.
DOI: 10.6084/m9.figshare.5979556
title: Senderos Filológicos. Políticas Editoriales

description: Carpeta de presentación para sociabilización del proyecto del revista de divulgación digital "Senderos Filológicos"
DOI: 10.6084/m9.figshare.5979544
title: Data from: Reconstructing past fire temperatures from ancient charcoal material

description: Charcoal chemistry spectra generated using Fourier Transformed Infrared Spectroscopy (FTIR) for modern reference and ancient charcoal. <br>For further details see the associated publication:<br>Gosling, W.D., Cornelissen, H.L. & McMichael, C.N.H. (2019) Reconstructing past fire temperatures from ancient charcoal material. <i>Palaeogeography, Palaeoclimatology, Palaeoecology. </i>https://doi.org/10.1016/j.palaeo.2019.01.029 <br>
DOI: 10.6084/m9.figshare.5979421
title: advertiser.xlsx

description: A study with 200 customers to publish an Ad
DOI: 10.6084/m9.figshare.5979412
title: An updated checklist of the vascular flora alien to Italy

description: An updated inventory of the vascular flora alien to Italy, providing details on the occurrence at regional level, is presented. The checklist includes 1597 species, subspecies, and hybrids, distributed in 725 genera and 152 families; 2 taxa are lycophytes, 11 ferns and fern allies, 33 gymnosperms, and 1551 angiosperms. 157 taxa are archaeophytes and 1440 neophytes. The alien taxa currently established in Italy are 791 (570 naturalized and 221 invasive), while 705 taxa are casual aliens, 4 are not assessed, 7 are of unknown regional distribution, 47 have not been confirmed in recent times, 3 are considered extinct or possibly extinct in the country, and 40 are doubtfully occurring in Italy. This checklist allows to establish an up-to-date number (9792) of taxa constituting the whole (native and alien) Italian flora.
DOI: 10.6084/m9.figshare.5979412.v1
title: An updated checklist of the vascular flora alien to Italy

description: An updated inventory of the vascular flora alien to Italy, providing details on the occurrence at regional level, is presented. The checklist includes 1597 species, subspecies, and hybrids, distributed in 725 genera and 152 families; 2 taxa are lycophytes, 11 ferns and fern allies, 33 gymnosperms, and 1551 angiosperms. 157 taxa are archaeophytes and 1440 neophytes. The alien taxa currently established in Italy are 791 (570 naturalized and 221 invasive), while 705 taxa are casual aliens, 4 are not assessed, 7 are of unknown regional distribution, 47 have not been confirmed in recent times, 3 are considered extinct or possibly extinct in the country, and 40 are doubtfully occurring in Italy. This checklist allows to establish an up-to-date number (9792) of taxa constituting the whole (native and alien) Italian flora.
DOI: 10.6084/m9.figshare.5978614
title: E12_PTsX1_processeddata_Tile3.csv

description: Processed deep sequencing datasets for "Characterization of individual human antibodies binding pertussis toxin stimulated by acellular immunization"
DOI: 10.6084/m9.figshare.5978614.v1
title: E12_PTsX1_processeddata_Tile3.csv

description: Processed deep sequencing datasets for "Characterization of individual human antibodies binding pertussis toxin stimulated by acellular immunization"
DOI: 10.6084/m9.figshare.5978596
title: E12_PTsX1_processeddata_Tile2.csv

description: Processed deep sequencing datasets for "Characterization of individual human antibodies binding pertussis toxin stimulated by acellular immunization"
DOI: 10.6084/m9.figshare.5978563
title: E12_PTsX1_processeddata_Tile1.csv

description: Processed deep sequencing datasets for "Characterization of individual human antibodies binding pertussis toxin stimulated by acellular immunization"
DOI: 10.6084/m9.figshare.5978563.v1
title: E12_PTsX1_processeddata_Tile1.csv

description: Processed deep sequencing datasets for "Characterization of individual human antibodies binding pertussis toxin stimulated by acellular immunization"
DOI: 10.6084/m9.figshare.5978509
title: A8_PTsX1_processeddata_Tile3.csv

description: Processed deep sequencing datasets for "Characterization of individual human antibodies binding pertussis toxin stimulated by acellular immunization"
DOI: 10.6084/m9.figshare.5978509.v1
title: A8_PTsX1_processeddata_Tile3.csv

description: Processed deep sequencing datasets for "Characterization of individual human antibodies binding pertussis toxin stimulated by acellular immunization"
DOI: 10.6084/m9.figshare.5978392
title: Rainbow trout (Oncorhynchus mykiss) skin digital images

description: 160 rainbow trout were fed either a commercial based diet (80 fish) or a 100 % plant-based diet (80 fish) and photographed using consumer-grade digital camera. Each live fish was photographed with a 12-megapixel Nikon D3300 digital camera (Nikon Corp., Tokyo, Japan) under a lighting system consisting of four halogen lamps (200 W bulb) at an angle of 45 degrees, and 35 cm above the sample to not only provide constant intensity output but also to give the uniform light intensity over the fish sample. Images were collected in a dark room with only light source, coming through halogen lamps cast on fish skin. Digital camera was located vertically at 56 cm from the sample. All setting on the camera were on manual. The setting of camera was: exposure mode = manual, shutter speed = 1/160 s, aperture = f/4.0, ISO sensitivity = 100. The images were recorded in Nikon Raw format (NEF) and transferred to a laptop for further processing.An excel sheet which includes all relevent details also provided.
DOI: 10.6084/m9.figshare.5977987
title: A8_PTsX1_processeddata_Tile2.csv

description: Processed deep sequencing datasets for "Characterization of individual human antibodies binding pertussis toxin stimulated by acellular immunization"
DOI: 10.6084/m9.figshare.5977987.v1
title: A8_PTsX1_processeddata_Tile2.csv

description: Processed deep sequencing datasets for "Characterization of individual human antibodies binding pertussis toxin stimulated by acellular immunization"
DOI: 10.6084/m9.figshare.5977963
title: A8_PTsX1_processeddata_Tile1.csv

description: Processed deep sequencing datasets for "Characterization of individual human antibodies binding pertussis toxin stimulated by acellular immunization"
DOI: 10.6084/m9.figshare.5977963.v1
title: A8_PTsX1_processeddata_Tile1.csv

description: Processed deep sequencing datasets for "Characterization of individual human antibodies binding pertussis toxin stimulated by acellular immunization"
DOI: 10.6084/m9.figshare.5977900.v2
title: Supplementary figures

description: Supplementary figures with legends
DOI: 10.6084/m9.figshare.5977894
title: data.zip

description: Contains data for 10 subjects. Each subject performed 8 tasks and 4 repetitions of each task. Kinematic data are stored in files x_i_j.r where i (i=1,...,8) is the task number and j (j=1,...,4) is the repetition number. In each file, the first column is time (in s), the second column the x coordinate (in m) and the third column the y coordinate (in m). The file "metataskname.r" contains the description of the 8 tasks. Corresponding metronome data are stored in files y_i_j.r. The time of the metronome is given in the last column of the file.<br>These data correspond toGuigon E, Chafik O, Jarrassé N, Roby-Brami A (2019) Experimental and theoretical study of velocity fluctuations during slow movements in humans. J Neurophysiol<br>https://dx.doi.org/10.1152/jn.00576.2018<br>
DOI: 10.6084/m9.figshare.5977894.v1
title: data.zip

description: Contains data for 10 subjects. Each subject performed 8 tasks and 4 repetitions of each task. Kinematic data are stored in files x_i_j.r where i (i=1,...,8) is the task number and j (j=1,...,4) is the repetition number. In each file, the first column is time (in s), the second column the x coordinate (in m) and the third column the y coordinate (in m). The file "metataskname.r" contains the description of the 8 tasks. Corresponding metronome data are stored in files y_i_j.r. The time of the metronome is given in the last column of the file.<br>These data correspond toGuigon E, Chafik O, Jarrassé N, Roby-Brami A (2019) Experimental and theoretical study of velocity fluctuations during slow movements in humans. J Neurophysiol<br>https://dx.doi.org/10.1152/jn.00576.2018<br>
DOI: 10.6084/m9.figshare.5977894.v3
title: data.zip

description: Contains data for 10 subjects. Each subject performed 8 tasks and 4 repetitions of each task. Kinematic data are stored in files x_i_j.r where i (i=1,...,8) is the task number and j (j=1,...,4) is the repetition number. In each file, the first column is time (in s), the second column the x coordinate (in m) and the third column the y coordinate (in m). The file "metataskname.r" contains the description of the 8 tasks. Corresponding metronome data are stored in files y_i_j.r. The time of the metronome is given in the last column of the file.<br>These data correspond toGuigon E, Chafik O, Jarrassé N, Roby-Brami A (2019) Experimental and theoretical study of velocity fluctuations during slow movements in humans. J Neurophysiol<br>https://dx.doi.org/10.1152/jn.00576.2018<br>
DOI: 10.6084/m9.figshare.5977879
title: Supplementary dataset 1

description: Compressed archive of complete results of <i>de-novo</i> and known motif enrichment analysis with Homer. Each differentially expressed set has its own folder, containing a web page named “homerResults.html” for <i>de-novo</i> motif analysis and “knownResults.html” for known motif analysis, as well as position weight matrices for all motifs. <br>
DOI: 10.6084/m9.figshare.5977846
title: Supplementary tables

description: Supplementary Tables 1-4 (xls format)
DOI: 10.6084/m9.figshare.5977846.v1
title: Supplementary tables

description: Supplementary Tables 1-4 (xls format)
DOI: 10.6084/m9.figshare.5977846.v3
title: Supplementary tables

description: Supplementary Tables 1-4 (xls format)
DOI: 10.6084/m9.figshare.5977846.v2
title: Supplementary tables

description: Supplementary Tables 1-4 (xls format)
DOI: 10.6084/m9.figshare.5977840
title: Assessing sources of uncertainty in length-based estimates of body growth in populations of fishes and macroinvertebrates with bootstrapped ELEFAN

description: <b>Supplementary material for the paper</b>:<br>Schwamborn, R, Mildenberger, T.K., Taylor, M.H., submitted. Assessing sources of uncertainty in length-based estimates of body growth in populations of fishes and macroinvertebrates with bootstrapped ELEFAN.<br><br><b>Description</b>:<br>The fileset provides R scripts and results presented in the paper by Schwamborn et al (submitted). The analyses uses functions available in the new R package "fishboot" (Schwamborn et al. 2018), which builds on ELEFAN functions available in the TropFishR package (Mildenberger et al. 2017, 2018, Taylor et al. 2017), to provide confidence intervals of growth parameter estimates using a bootstrapping procedure applied to length frequency data. <br><br><b>Contents</b>:<br><b>Supplement_Schwamborn_etal.Rproj</b> - RStudio project file. When opened in RStudio, script file paths should remain compatible across platforms.<br><b>/results</b> - results of bootstrapping experiments provided as .Rdata and graphical files. <br><b>/scripts</b> - scripts for running bootstrapping analyses on "alba" and "synLFQb" datasets. A basic bootstrapping demonstration using the "alba" dataset is also provided.<br><br><b>References</b>:<br>- Mildenberger, T.K., Taylor, M.H., Wolff, M., 2017. TropFishR: an R package for fisheries analysis with length-frequency data. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.12791<br>- Mildenberger, T.K., Taylor, M.H., and Wolff, M., 2018. TropFishR: Tropical Fisheries Analysis with R. R package version 1.2.1. https://CRAN.R-project.org/package=TropFishR<br>- Schwamborn, R, Mildenberger, TK, Taylor, MH, 2018. fishboot: Bootstrap-based methods for the study of fish stocks and aquatic populations. R package version 0.1. https://github.com/rschwamborn/fishboot<br>- Taylor, M.H, Mildenberger, T.K., 2017. Extending electronic length frequency analysis in R. Fisheries Management and Ecology. 24:330-338. https://doi.org/10.1111/fme.12232
DOI: 10.6084/m9.figshare.5977783
title: SLING

description: Tree and alignment files used in SLING paper
DOI: 10.6084/m9.figshare.5977783.v1
title: SLING

description: Tree and alignment files used in SLING paper
DOI: 10.6084/m9.figshare.5977720
title: Manuscript submission data and R code archive for: Payment for environmental “self-service”: exploring the links between farmers’ motivation and additionality in a conservation incentive programme in the Bolivian Andes

description: This fileset contains R code, data and metadata for a revised manuscript submission to Ecological Economics.<br>
DOI: 10.6084/m9.figshare.5977720.v1
title: Manuscript submission data and R code archive for: Payment for environmental “self-service”: exploring the links between farmers’ motivation and additionality in a conservation incentive programme in the Bolivian Andes

description: This fileset contains R code, data and metadata for a revised manuscript submission to Ecological Economics.<br>
DOI: 10.6084/m9.figshare.5977717
title: The 2015 Outbreak of severe influenza in Kashmir, north India: emergence of a new clade of A/H1N1 influenza virus

description: Data set
DOI: 10.6084/m9.figshare.5977717.v2
title: The 2015 Outbreak of severe influenza in Kashmir, north India: emergence of a new clade of A/H1N1 influenza virus

description: Data set
DOI: 10.6084/m9.figshare.5977717.v1
title: The 2015 Outbreak of severe influenza in Kashmir, north India: emergence of a new clade of A/H1N1 influenza virus

description: Data set