cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.38qqmq
title: Occurrence Download

description: A dataset containing 19584 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cedrela odorata L."
 ]
}

 The dataset includes 19584 records from 568 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014176-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9reeqb
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Sesbania oligosperma"
 ]
}

 The dataset includes 32 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009897-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.67tg8j
title: Occurrence Download

description: A dataset containing 77782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursus arctos"
 ]
}

 The dataset includes 77782 records from 341 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009869-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26165/juelich-data/4brlem
title: Replication Data for the study of the Asian Summer Monsoon Anticyclone Boundary

description: This data set is part of the study by Kachula et. al (2025). It includes time series of the Montgomery streamfunction contour level from May to September for each day at 12:00 UTC during the period 1980-2023 at 350 K, 370 K, 390 K and 410 K, representing the boundary of the Asian Summer Monsoon Anticyclone as calculated by the proposed method. In addition, we provide the Montgomery streamfunction data defined on a regular 1° × 1° grid.
DOI: 10.15468/dl.han8z4
title: Occurrence Download

description: A dataset containing 6520 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA.7_1",
 "Year is 2025"
 ]
}

 The dataset includes 6520 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009899-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17494673
title: HPC-Q Technical Report}: Causal Control of Quantum Chaos in VQAs \\ {A Quantum Axiomatic Cyber-Physical System (QCPS) Demonstration
DOI: 10.5281/zenodo.17494674
title: HPC-Q Technical Report}: Causal Control of Quantum Chaos in VQAs \\ {A Quantum Axiomatic Cyber-Physical System (QCPS) Demonstration
DOI: 10.15468/dl.2n8249
title: Occurrence Download

description: A dataset containing 53974697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is France",
 "OccurrenceStatus is Present",
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862",
 "TaxonKey is Chordata",
 "Year 2005-2025"
 ]
}

 The dataset includes 53974697 records from 15328 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009888-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3hn2k
title: Occurrence Download

description: A dataset listing the 141 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Percidae",
 "Country is United States of America",
 "StateProvince is Arkansas",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 141 records were derived from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0283841-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqgtnu
title: Occurrence Download

description: A dataset containing 2342 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dichocarpum W.T.Wang & P.K.Hsiao"
 ]
}

 The dataset includes 2342 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198987-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11541211
title: Dataset 2. Variant Distribution of Majority Molecular Phenotype Classifications Relative to All Classifications

description: A variant may occur in multiple individuals, tissue types, or splice sites. A consensus (majority) molecular phenotype classification for the variant is displayed on ValidSpliceMut, generated by observing all affected cases and associated classifications. For each expression validated variant, the phenotypes are classified as per Figure 2 of Shirley et al. 2019  (https://doi.org/10.12688/f1000research.17204.3). The bins on the horizontal axis of these histograms represent the count of splicing variants with the most frequent classification divided by the total number of cases affected by a variant. Bar height represents the number of variants having the majority classification within the appropriate bin. 

Below each histogram is a table that describes the distribution of majority molecular phenotypes in each bin. The three bins consist of mutations designated as variants that cause allele-specific alternative splicing (category 1), those that are likely aberrant (category 2) and mutations that are aberrant (category 3). For a full description of how these molecular phenotype classifications are determined, see Shirley et al. 2019. Figure 2 of the paper describes the algorithm we use to ensure that variants with no effect on splicing have been eliminated previous to this analysis.

To gain more information about the mutations in a particular bin, an  data file has been provided for each of these figures. To identify which mutations occur in each bin, sort the data file in order of the `%Mol_Phenotype` column which was used to designate histogram bins. Once a mutation of interest has been found, download Dataset 1 on Zenodo (Filename: ‘ValidSpliceMut_TabDelimited_v4.txt’) and search for the mutation (mutation names will be identical). The mutation will appear in Dataset for however many patients the mutation was identified in (from the TCGA and ICGC Cancer Projects). From Dataset 1, users can acquire the mutation’s associated gene, its position within a gene, the Information-Theory based prediction that the mutation would have  on splicing, and the given evidence of splicing using the Veridical algorithm. The latter provides how many reads were found in RNAseq data that supported an aberrant splicing event (exon skipping, intron inclusion, etc).

Files/archives provided:

1 Supplementary figure to Shirley et al. F1000Research 2019, 7:1908. Dataset 2 contains six histograms and supporting tables (generated with GraphPad Prism v6.0). A variant may occur in multiple individuals, tissue types, or splice sites. Histogram bins show the fraction of  splicing molecular phenotype classifications relative to the major consensus phenotype among all cases for variants that are present  in at least 2, 3, 5, 10, 15, and 20 different tissue types.

2. Aggregated variant data/consensus phenotypes used to generate histograms, including tissue types.

3.  Software to generate histograms from variants validated in Dataset 1 (DOI 10.5281/zenodo.1488210).
DOI: 10.5281/zenodo.3375705
title: Dataset 2. Variant Distribution of Majority Molecular Phenotype Classifications Relative to All Classifications

description: A variant may occur in multiple individuals, tissue types, or splice sites. A consensus (majority) molecular phenotype classification for the variant is displayed on ValidSpliceMut, generated by observing all affected cases and associated classifications. For each expression validated variant, the phenotypes are classified as per Figure 2 of Shirley et al. 2019  (https://doi.org/10.12688/f1000research.17204.3). The bins on the horizontal axis of these histograms represent the count of splicing variants with the most frequent classification divided by the total number of cases affected by a variant. Bar height represents the number of variants having the majority classification within the appropriate bin. 

Below each histogram is a table that describes the distribution of majority molecular phenotypes in each bin. The three bins consist of mutations designated as variants that cause allele-specific alternative splicing (category 1), those that are likely aberrant (category 2) and mutations that are aberrant (category 3). For a full description of how these molecular phenotype classifications are determined, see Shirley et al. 2019. Figure 2 of the paper describes the algorithm we use to ensure that variants with no effect on splicing have been eliminated previous to this analysis.

To gain more information about the mutations in a particular bin, an  data file has been provided for each of these figures. To identify which mutations occur in each bin, sort the data file in order of the `%Mol_Phenotype` column which was used to designate histogram bins. Once a mutation of interest has been found, download Dataset 1 on Zenodo (Filename: ‘ValidSpliceMut_TabDelimited_v4.txt’) and search for the mutation (mutation names will be identical). The mutation will appear in Dataset for however many patients the mutation was identified in (from the TCGA and ICGC Cancer Projects). From Dataset 1, users can acquire the mutation’s associated gene, its position within a gene, the Information-Theory based prediction that the mutation would have  on splicing, and the given evidence of splicing using the Veridical algorithm. The latter provides how many reads were found in RNAseq data that supported an aberrant splicing event (exon skipping, intron inclusion, etc).

Files/archives provided:

1 Supplementary figure to Shirley et al. F1000Research 2019, 7:1908. Dataset 2 contains six histograms and supporting tables (generated with GraphPad Prism v6.0). A variant may occur in multiple individuals, tissue types, or splice sites. Histogram bins show the fraction of  splicing molecular phenotype classifications relative to the major consensus phenotype among all cases for variants that are present  in at least 2, 3, 5, 10, 15, and 20 different tissue types.

2. Aggregated variant data/consensus phenotypes used to generate histograms, including tissue types.

3.  Software to generate histograms from variants validated in Dataset 1 (DOI 10.5281/zenodo.1488210).
DOI: 10.15468/dl.2z84kt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panicum brevifolium L.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198981-220831081235567/datasets/export for details.
DOI: 10.15468/dl.e5s7qc
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Otocolobus manul (Pallas, 1776)"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196675-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7vt45
title: Occurrence Download

description: A dataset containing 82855 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Museu Paraense Emílio Goeldi - Ornithology Collection - Feathers_and_Skin"
 ]
}

 The dataset includes 82855 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244970-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgdc7j
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asarum asaroides (C.Morren & Decne.) Makino",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 51 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196667-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpc8s9
title: Occurrence Download

description: A dataset containing 884 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hydrophis cyanocinctus Daudin, 1803"
 ]
}

 The dataset includes 884 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198983-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mad3q7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limnophila japonica Alexander, 1913",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196671-220831081235567/datasets/export for details.
DOI: 10.15468/dl.yzq84w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hygroryza aristata (Retz.) Nees ex Wight & Arn.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198973-220831081235567/datasets/export for details.
DOI: 10.15468/dl.8pbng5
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xenoxybelis boulengeri (Procter, 1923)"
 ]
}

 The dataset includes 87 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244971-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhzr6y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Philonthus lederi Eppelsheim, 1893",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217994-220831081235567/datasets/export for details.
DOI: 10.15468/dl.2t5eg2
title: Occurrence Download

description: A dataset containing 36824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cuphea P.Browne"
 ]
}

 The dataset includes 36824 records from 424 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196673-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fa6m5v
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melica onoei Franch. & Sav.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 205 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198975-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69e6wf
title: Occurrence Download

description: A dataset listing the 2176 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Specimen, Living Specimen, Material sample, Material citation, Occurrence evidence)",
 "Country is Mexico",
 "Geometry POLYGON((-92.3146 14.72387,-91.62209 17.25336,-89.40607 17.9135,-88.29806 19.48771,-87.60555 21.17597,-89.82157 20.52883,-92.17609 18.17688,-94.66912 17.9135,-96.74663 18.96461,-98.13165 22.33368,-98.27015 24.99728,-99.37816 26.49424,-101.45568 29.18818,-103.8102 28.94606,-106.02622 30.62879,-108.65774 30.98566,-111.50742 31.3145,-113.75 31.84942,-114.42913 32.11178,-115.99696 32.65695,-116.96532 32.50152,-116.08918 31.3273,-116.08918 30.81384,-115.62806 30.21796,-114.93637 29.61845,-114.10634 28.69226,-113.968 27.83937,-114.3369 27.43085,-113.64522 27.02082,-112.63074 26.81524,-111.98516 25.86478,-111.89294 24.7392,-110.55567 23.8988,-110.09455 23.22251,-109.65467 23.30723,-111.13652 24.6917,-111.1702 25.39348,-111.91112 26.72464,-112.98884 28.15925,-114.06655 29.31093,-114.94219 30.47879,-115.18492 31.76593,-114.24589 31.63979,-113.05976 31.1758,-112.46669 29.85597,-111.23114 28.56188,-108.95772 26.59068,-107.52447 24.80946,-105.49816 22.91125,-104.95452 21.30874,-104.15153 19.25622,-102.99069 18.77198,-101.79984 18.20729,-100.18369 17.55969,-98.22729 16.66545,-96.61113 16.17591,-94.82486 16.50241,-93.63401 16.58395,-92.3146 14.72387))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset's 2176 records were derived from 188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229864-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.at4kq7
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panicum perrieri A.Camus"
 ]
}

 The dataset's 1 records were derived from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198958-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.weqatd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Histiotus velatus (I.Geoffroy, 1824)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244977-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxx84c
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asarum mikuniense Yamaji & Ter.Nakam.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 27 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196677-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89wrjn
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pleioblastus nagashima (Mitford) Nakai",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198990-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3xdvg
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Curcuma candida (Wall.) Techapr. & Škorničk.",
 "Year 2000-2024"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066442-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5yx5h
title: Occurrence Download

description: A dataset listing the 67041 species recorded in GBIF matching the query:
{
 "Country" : [
 "is Switzerland"
 ]
}

 The dataset's 67041 records were derived from 1401 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199032-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-04.3093043/2559226
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093046/2559227
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093049/2559228
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093055/2559229
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093056/2559230
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093058/2559231
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093059/2559232
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093062/2559233
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3093066/2559234
title: Data for EMSL Project 51287 from April 2024
DOI: 10.60712/si-id374088.1
title: StrainInfo SI-ID 374088.1

description: StrainInfo dataset 374088 about a strain of Caballeronia humi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id374122.1
title: StrainInfo SI-ID 374122.1

description: StrainInfo dataset 374122 about a strain of Sporosarcina newyorkensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id374132.1
title: StrainInfo SI-ID 374132.1

description: StrainInfo dataset 374132 about a strain of Aeromicrobium halocynthiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id374134.1
title: StrainInfo SI-ID 374134.1

description: StrainInfo dataset 374134 about a strain of Tomitella biformata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.