cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xuhwap
title: Occurrence Download

description: A dataset containing 839286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Culex torrentium, Culex annulirostris, Culiseta melanura, Culex tarsalis, Aedes intrudens, Aedes koreicus, Aedes japonicus, Anopheles sinensis, Aedes oceanicus, Culex pipiens, Aedes vigilax, Culex univittatus, Aedes taeniorhynchus, Haemagogus leucocelaenus, Haemagogus spegazzinii, Anopheles funestus, Anopheles albimanus, Anopheles aconitus, Anopheles gambiae, Culex quinquefasciatus, Culex tritaeniorhynchus, Aedes africanus, Aedes aegypti, Aedes vexans, Aedes albopictus)",
 "Year 2000-2026"
 ]
}

 The dataset includes 839286 records from 457 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000908-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.v54v8
title: Data from: A Drosophila female pheromone elicits species-specific long-range attraction via an olfactory channel with dual specificity for sex and food

description: Background: Mate finding and recognition in animals evolves during niche
 adaptation and involves social signals and habitat cues. Drosophila
 melanogaster and related species are known to be attracted to fermenting
 fruit for feeding and egg-laying, which poses the question of whether
 species-specific fly odours contribute to long-range premating
 communication. Results: We have discovered an olfactory channel in D.
 melanogaster with a dual affinity to sex and food odorants. Female flies
 release a pheromone, (Z)-4-undecenal (Z4-11Al), that elicits flight
 attraction in both sexes. Its biosynthetic precursor is the cuticular
 hydrocarbon (Z,Z)-7,11-heptacosadiene (7,11-HD), which is known to afford
 reproductive isolation between the sibling species D. melanogaster and D.
 simulans during courtship. Twin olfactory receptors, Or69aB and Or69aA,
 are tuned to Z4-11Al and food odorants, respectively. They are
 co-expressed in the same olfactory sensory neurons, and feed into a neural
 circuit mediating species-specific, long-range communication; however, the
 close relative D. simulans, which shares food resources with D.
 melanogaster, does not respond to Z4-11Al. Conclusion: The Or69aA and
 Or69aB isoforms have adopted dual olfactory traits. The underlying gene
 yields a collaboration between natural and sexual selection, which has the
 potential to drive speciation.
description: lebreton data files
 readmeReadme file, contains
 data file names and short description of their contentslebreton 2 chemical
 analysisChemical analysis (Table
 1); Excel.lebreton 3 ssr
 screeningSingle sensillum
 screening, all sensillum types, native antenna (Figure 1D);
 Excel.lebreton 4 ssr ab9
 ab3Single sensillum
 recordings in ab9 (native) and ab3 sensilla (following heterologous
 expression) (Figure 2A,B); Excel.lebreton 5 strain
 energiesPairwise compound
 comparison (Figure 2C); Excel.lebreton 6 wind
 tunnelWind tunnel bioassay
 (Figure 3); Excel.lebreton 7 OR69a
 sequenced transgenesSequences of OR69a
 variants used to produce transgenic “empty neuron” flies (Figure 2B).
 These are 99-100% identical to sequences in the NCBI database. Text
 file.lebreton 8
 oxidationOxidation of 7,11-HD on
 glass (Table 2); Excel.lebreton 1 spectrum
 tabulatedMass spectrum Z4-11Al,
 tabulated (Figure 1A); Excel.
DOI: 10.5061/dryad.820bs
title: Data from: Effect of an invasive plant and moonlight on rodent foraging behavior in a coastal dune ecosystem

description: Understanding how invasive plants may alter predator avoidance behaviors
 is important for granivorous rodents because their foraging can trigger
 ripple effects in trophic webs. Previous research has shown that European
 beach grass Ammophila arenaria, an invasive species in coastal California,
 affects the predation of other seeds by the rodents Microtus californicus,
 Peromyscus maniculatus, and Reithrodontomys megalotis. This may be due to
 lower perceived predation risk by rodents foraging in close proximity to
 the cover provided by Ammophila, but this mechanism has not yet been
 tested. We examined the perceived predation risk of rodents by measuring
 the ‘giving up density’ of food left behind in experimental patches of
 food in areas with and without abundant cover from Ammophila and under
 varying amount of moonlight. We found strong evidence that giving up
 density was lower in the thick uniform vegetation on Ammophila-dominated
 habitat than it was in the more sparsely and diversely vegetated restored
 habitat. There was also evidence that moonlight affected giving up density
 and that it mediated the effects of habitat, although with our design we
 were unable to distinguish the effects of lunar illumination and moon
 phase. Our findings illustrate that foraging rodents, well known to be
 risk-averse during moonlit nights, are also affected by the presence of an
 invasive plant. This result has implications for granivory and perhaps
 plant demography in invaded and restored coastal habitats. Future research
 in this system should work to unravel the complex trophic links formed by
 a non-native invasive plant (i.e., Ammophila) providing cover favored by
 native rodents, which likely forage on and potentially limit the
 recruitment of native and non-native plants, some of which have ecosystem
 consequences of their own.
description: GUD_data_PLOS
DOI: 10.5061/dryad.6tc61
title: Data from: Rapid adaptive evolution in novel environments acts as an architect of population range expansion

description: Colonization and expansion into novel landscapes determine the
 distribution and abundance of species in our rapidly changing ecosystems
 worldwide. Colonization events are crucibles for rapid evolution, but it
 is not known whether evolutionary changes arise mainly after successful
 colonization has occurred, or if evolution plays an immediate role,
 governing the growth and expansion speed of colonizing populations. There
 is evidence that spatial evolutionary processes can speed range expansion
 within a few generations because dispersal tendencies may evolve upwards
 at range edges. Additionally, rapid adaptation to a novel environment can
 increase population growth rates, which also promotes spread. However, the
 role of adaptive evolution and the relative contributions of spatial
 evolution and adaptation to expansion are unclear. Using a model system,
 red flour beetles (Tribolium castaneum), we either allowed or constrained
 evolution of populations colonizing a novel environment, and measured
 population growth and spread. At the end of the experiment we assessed the
 fitness and dispersal tendency of individuals originating either from the
 core or edge of evolving populations or from nonevolving populations in a
 common garden. Within six generations, evolving populations grew three
 times larger and spread 46% faster than populations in which evolution was
 constrained. Increased size and expansion speed were strongly driven by
 adaptation, whereas spatial evolutionary processes acting on edge
 subpopulations contributed minimally. This experimental evidence
 demonstrates that rapid evolution drives both population growth and
 expansion speed, and is thus crucial to consider for managing biological
 invasions and successfully introducing or reintroducing species for
 management and conservation.
description: Szucs and
 Vahsen_data_PNASThe first tab of the
 excel file contains description of the data.
DOI: 10.5061/dryad.n82r2
title: Data from: Effects of developmental conditions on growth, stress, and telomeres in black-legged kittiwake chicks

description: Early-life conditions can drive ageing patterns and life history
 strategies throughout the lifespan. Certain social, genetic, and
 nutritional developmental conditions are more likely to produce
 high-quality offspring: those with good likelihood of recruitment and
 productivity. Here we call such conditions “favored states” and explore
 their relationship with physiological variables during development in a
 long-lived seabird, the black-legged kittiwake (Rissa tridactyla). Two
 favored states were experimentally generated by manipulation of food
 availability and brood size, while hatching order and sex were also
 explored as naturally generating favored states. Thus, the favored states
 we explored were high food availability, lower levels of sibling
 competition, hatching first, and male sex. We tested the effects of
 favored developmental conditions on growth, stress, telomere length (a
 molecular marker associated with lifespan), and nestling survival.
 Generation of favored states through manipulation of both the nutritional
 and social environments furthered our understanding of their relative
 contributions to development and phenotype: increased food availability
 led to larger body size, reduced stress, and higher antioxidant status,
 while lower sibling competition (social environment) led to lower telomere
 loss and longer telomere lengths in fledglings. Telomere length predicted
 nestling survival, and wing growth was also positively correlated with
 telomere length, supporting the idea that telomeres may indicate
 individual quality, mediated by favored states.
description: BLKI
 Data_forDRYADThis file contains all
 the data used in the paper: physiological, morphological, and molecular
 data for Black-legged Kittiwake chicks in 2009 and 2011 from Middleton
 Island, Alaska. It includes chicks in supplementally fed nests and non-fed
 nests, chicks in experimentally enlarged nests (including fosters), and
 chicks in control nests of 2 natural chicks.
DOI: 10.5061/dryad.8qr6qf4
title: Data from: Host-plant dissections reveal contrasting distributions of Crematogaster ants and their symbionts in two myrmecophytic Macaranga species

description: 1. Ant–plant mutualisms are among the most widespread and ecologically
 important insect–plant interactions in the tropics. The multitrophic
 mutualism involving Macaranga plants (Euphorbiaceae) and Crematogaster
 ants (Formicidae) is the most diverse in Southeast Asia. This interaction
 also includes trophobiotic scale insects (Coccidae) and nematodes
 inhabiting ant refuse piles. 2. Here we compared two myrmecophytic
 systems, Macaranga trachyphylla with Crematogaster captiosa (Mt+Cc) and M.
 beccariana with C. decamera (Mb+Cd), using a fine-scale dissection of the
 stems. For the two plant species, for each internode we recorded both
 contents (ants, coccids, refuse piles) and structure (internode height,
 numbers of open and occluded ant holes). 3. There were significant
 patterns in the vertical distribution of ant colonies and their symbionts
 in the plant stems. Most coccids were kept in the highest sections of both
 systems, although Mb+Cd hosted a broader range of coccid species than
 Mt+Cc. Three nematode species were recorded, but with a rather low
 specificity to plant or ant species. Furthermore, the fine-scale
 distribution showed aggregation of closed holes with ant brood and
 separation of nematode-infested refuse piles from eggs. 4. Our study
 indicates that ants manipulate spatial colony structure via distribution
 of brood, holes and the symbionts. We suggest that ants optimise the
 location of refuse piles and occluded holes via spatial heterogeneity in
 their distribution among internodes. We discuss the protective role of
 occluded holes and demonstrate rather general interactions with other
 symbiotic fauna.
description: Host-plant dissections
 reveal contrasting distributions of Crematogaster ants and their symbionts
 in two myrmecophytic Macaranga speciesHere we compared two
 myrmecophytic systems, Macaranga trachyphylla with Crematogaster captiosa
 (Mt+Cc) and M. beccariana with C. decamera (Mb+Cd), using a fine-scale
 dissection of the stems. For the two plant species, for each internode we
 recorded both contents (ants, coccids, refuse piles) and structure
 (internode height, numbers of open and occluded ant
 holes)Macaranga-ALL-Data-ForDryad.xlsx
DOI: 10.5061/dryad.dj7f25r
title: Data from: Phenology and the physiological niche are co-adapted in a desert dwelling lizard

description: 1. A major goal of seasonal biology is to understand how selection on
 phenology and the physiological niche interact. In oviparous species,
 fitness variation across the growing season suggests that phenological
 shifts will alter selective environments experienced by embryos. We
 hypothesize that physiology could become co-adapted with phenology; such
 that embryos perform better in the environmental conditions they are
 adapted to compared to embryos adapted to other environments (temporal
 matching). 2. Here, we tested for temporal matching to seasonal changes in
 the environmental temperatures with toad-headed lizard, Phrynocephalus
 przewalskii, which inhabits the temperate desert steppe of China. We used
 a split clutch reciprocal experiment, by incubating eggs from early- and
 late-breeding females at rising and falling temperature regimes
 respectively, to separate the influence of intrinsic (genetic and
 parental) versus extrinsic factors (developmental plasticity or
 acclimatization) on the performance and fitness of offspring. 3. Eggs from
 early-breeding females were with higher quality than those from
 late-breeding females, likely due to better maternal provisioning.
 Offspring from early-breeding females had higher selected body
 temperatures and metabolic rates than those from late-breeding females. 4.
 Falling temperatures that may indicate the end of the growing season,
 reduced incubation duration and increased metabolic rates for both early
 and late eggs, compared to rising temperatures. Late hatchlings had higher
 growth rates when incubated at falling compared to rising temperatures,
 while growth rates of early hatchlings were not sensitive to incubation
 temperature. Thus, growth and survival rates of late embryos were similar
 to early embryos under falling temperatures, despite early embryos being
 of generally higher quality. 5. Overall, our study confirms that “early is
 higher quality”. Intrinsic factors dominate offspring performance and
 fitness, with a general advantage for early embryos throughout the season.
 We found some support for temporal matching, demonstrating that late
 embryos with lower quality have physiological strategies that are
 specialized to late-season environments, allowing them to attain similar
 fitness in late-season environments to that of early embryos.
description: Thermal
 environmentThermal environment of
 early and late breeding time, and female body temperatures during
 collection1-Thermal
 environment.xlsxReprodution of
 femalesReproduction of
 females2-Reproduction.xlsxHatchling traitsHatchling traits of early and late offspring3-Hatchling traits.xlsx
DOI: 10.5061/dryad.hm021
title: Data from: The evolution of canaliculate rudists in the light of a new canaliculate polyconitid rudist from the Albian of the Central Pacific

description: A new polyconitid rudist, Magallanesia canaliculata gen. et sp. nov., of
 probably late Albian age, is described from the Pulangbato area, central
 Cebu Island, the Philippines in the western Central Pacific and Takuyo
 Daini Seamount, now located in the Northwest Pacific. It is similar to
 Praecaprotina Yabe and Nagao, 1926, a Japanese – Central Pacific endemic
 genus of late Aptian – early Albian age, but differs in having canals that
 developed by partitioning of the large ectomyophoral cavity in the
 posterior part of the left valve. Its discovery strengthens the evidence
 for Pacific endemism in Albian times. Several other clades of canaliculate
 rudists flourished or evolved at the same time in different regions of the
 Tethyan Realm, suggesting the presence of common global biological and/or
 environmental factors stimulating the evolution of the canals despite such
 endemism. Furthermore, the finding of a canaliculate polyconitid provides
 evidence in favour of the evolutionary hypothesis of a polyconitid origin
 for the Late Cretaceous canaliculate rudist family Plagioptychidae
 Douvillé, 1888.
description: Appendix: Character data
 and matrix for phylogenetic analysisAppendix: Character data
 for phylogenetic analysis of Magallanesia canaliculata gen. et sp. nov.,
 and of other selected canaliculate forms with TABLE 1: Character matrix
 for selected radiolitidine rudist taxa.Appendix.pdf
DOI: 10.5061/dryad.6dd7mb5
title: Data from: The early history of Annonaceae (Magnoliales) in Southeast Asia suggests floristic exchange between India and Pan-Indochina by the late Oligocene

description: The collision between India and Eurasia in the mid‐Palaeogene facilitated
 terrestrial floristic exchange. However, due to the complexity of this
 geological event and scarcity of fossil record, the plant migration
 patterns between the two plates are still highly debated. In this study,
 we focus on the Oligocene floristic exchange between India and
 Pan‐Indochina mainly based on a carpological study of Annonaceae, an
 emblematic family unique in its pantropical distribution and
 frugivore‐based dispersal strategy. A new seed species, Anonaspermum
 orientalis sp. nov., is described from the upper Oligocene Yongning
 Formation of Guangxi, southern China. The species represents the earliest
 known occurrence of this family in Pan‐Indochina. The specimens are
 characterized by ovate–elliptic seed shape, thicker seed testa, two‐lobed
 organization, lamelliform rumination and an obvious cone‐like plug. The
 palaeobiogeographical reconstruction of Annonaceae indicates that the most
 parsimonious dispersal scenario for the annonaceous taxon from the late
 Oligocene of China is the Out‐of‐India route, in parallel with other plant
 genera inferred to have migrated between India and Pan‐Indochina during
 that period.
description: Appendix S1 Comparisons
 of the present fossil fruit with the extant genera of
 AnnonaceaeAppendix S1 Comparisons of the
 present fossil fruit with the extant
 Annonaceae.docxAppendix S2 Fossil
 records of Annonaceae
DOI: 10.5061/dryad.hm041
title: Data from: Spatially cascading effect of perturbations in experimental meta-ecosystems

description: Ecosystems are linked to neighbouring ecosystems not only by dispersal,
 but also by the movement of subsidy. Such subsidy couplings between
 ecosystems have important landscape-scale implications because
 perturbations in one ecosystem may affect community structure and
 functioning in neighbouring ecosystems via increased/decreased subsidies.
 Here, we combine a general theoretical approach based on harvesting theory
 and a two-patch protist meta-ecosystem experiment to test the effect of
 regional perturbations on local community dynamics. We first characterized
 the relationship between the perturbation regime and local population
 demography on detritus production using a mathematical model. We then
 experimentally simulated a perturbation gradient affecting connected
 ecosystems simultaneously, thus altering cross-ecosystem subsidy
 exchanges. We demonstrate that the perturbation regime can interact with
 local population dynamics to trigger unexpected temporal variations in
 subsidy pulses from one ecosystem to another. High perturbation intensity
 initially led to the highest level of subsidy flows; however, the level of
 perturbation interacted with population dynamics to generate a crash in
 subsidy exchange over time. Both theoretical and experimental results show
 that a perturbation regime interacting with local community dynamics can
 induce a collapse in population levels for recipient ecosystems. These
 results call for integrative management of human-altered landscapes that
 takes into account regional dynamics of both species and resource flows.
description: Harvey_al_2016This compressed file contains the R code to perform main statistical analyses presented in the paper and to reproduce main figures. It also contains all the necessary data (in txt format) to reproduce our results. Please do not change the file names because it would result in the script not working anymore.
DOI: 10.5061/dryad.qg003
title: Data from: Potential contributions of root decomposition to the nitrogen cycle in arctic forest and tundra

description: 1. Plant contributions to the nitrogen (N) cycle from decomposition are
 likely to be altered by vegetation shifts associated with climate change.
 Roots account for the majority of soil organic matter input from
 vegetation, but little is known about differences between vegetation types
 in their root contributions to nutrient cycling. Here, we examine the
 potential contribution of fine roots to the N cycle in forest and tundra
 to gain insight into belowground consequences of the widely-observed
 increase in woody vegetation that accompanies climate change in the
 Arctic. 2. We combined measurements of root production from minirhizotron
 images with tissue analysis of roots from differing root diameter and
 colour classes to obtain potential N input following decomposition. In
 addition, we tested for changes in N concentration of roots during early
 stages of decomposition, and investigated whether vegetation type (forest
 or tundra) affected changes in tissue N concentration during
 decomposition. For completeness, we also present respective measurements
 of leaves. 3. The potential N input from roots was two-fold greater in
 forest than in tundra, mainly due to greater root production in forest.
 Potential N input varied with root diameter and colour but this variation
 tended to be similar in forest and tundra. As for roots, the potential N
 input from leaves was significantly greater in forest than in tundra.
 Vegetation type had no effect on changes in root or leaf N concentration
 after one year of decomposition. 4. Our results suggest that shifts in
 vegetation that accompany climate change in the Arctic will likely
 increase plant-associated potential N input both belowground and
 aboveground. In contrast, shifts in vegetation might not alter changes in
 tissue N concentration during early stages of decomposition. Overall,
 differences between forest and tundra in potential contribution of
 decomposing roots to the N cycle reinforce differences between habitats
 that occur for leaves.
description: Root_Ncycling