cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6arbbv
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chilasa clytia",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 176 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013351-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zw6yk3
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Kukulcania mexicana"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013352-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rne8f
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium incarnatum incarnatum",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013353-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exwa6t
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Henckelia hookeri"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013354-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14177456
title: Genome and annotations of cotton rat (Sigmodon hispidus)

description: The chromosome level reference genome of Sigmodon hispidus based on third-generation high fidelity (HiFi) reads, high-throughput chromosome conformation capture (Hi-C), and second-generation sequencing techniques.
DOI: 10.5281/zenodo.14177457
title: Genome and annotations of cotton rat (Sigmodon hispidus)

description: The chromosome level reference genome of Sigmodon hispidus based on third-generation high fidelity (HiFi) reads, high-throughput chromosome conformation capture (Hi-C), and second-generation sequencing techniques.
DOI: 10.15468/dl.zgp4d7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Henckelia medogensis"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013355-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jtswqw
title: Occurrence Download

description: A dataset containing 371 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prosopis nigra",
 "HasCoordinate is true"
 ]
}

 The dataset includes 371 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013356-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cv95zu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium nigrescens",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013357-250914085247600/datasets/export for details.
DOI: 10.15468/dl.vnrthm
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium nigrescens",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 30 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013358-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4sv47f
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium nigrescens",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013359-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4wava
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jerdonia indica"
 ]
}

 The dataset includes 56 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013360-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24emwg
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Crambe gomerae"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013362-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kssw9m
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "TaxonKey is Silybum marianum",
 "Year 2000-2025"
 ]
}

 The dataset includes 109 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013363-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13981848
title: Single cell expression matrix of Sigmodon hispidus

description: The cotton rat (Sigmodon hispidus) has emerged as a preclinical model for human respiratory syncytial virus (RSV) research because of its ability to support effective viral replication and recapitulate disease; however, the mechanisms supporting this evolutionarily conserved phenotype remain unclear. Here, we report both the chromosomal genome and respiratory single-cell transcriptomic atlas of the cotton rat throughout the course of RSV infection. Phylogenetic analysis showed that cotton rats are in different evolutionary branches from common mouse and rat models and exhibit substantial conservation of tissue profiles with humans. The respiratory cell atlas, alveolar cell trajectory, and distribution of potential viral receptors are also similar to those of humans, explaining the superiority of cotton rats as an RSV infection model. The target cells of RSV, including club cells, secretory2 cells, mesothelial cells, and nerve-associated astrocytes, were expanded after infection. We also identified differential transcriptional regulators, specific antiviral proteins, and cytokines that could be translated into potential clinical markers in humans. Candidate host factors were also identified, which will enable the exploration of host-RSV interactions and offer a source of therapeutic targets.
DOI: 10.5281/zenodo.13981849
title: Single cell expression matrix of Sigmodon hispidus

description: The cotton rat (Sigmodon hispidus) has emerged as a preclinical model for human respiratory syncytial virus (RSV) research because of its ability to support effective viral replication and recapitulate disease; however, the mechanisms supporting this evolutionarily conserved phenotype remain unclear. Here, we report both the chromosomal genome and respiratory single-cell transcriptomic atlas of the cotton rat throughout the course of RSV infection. Phylogenetic analysis showed that cotton rats are in different evolutionary branches from common mouse and rat models and exhibit substantial conservation of tissue profiles with humans. The respiratory cell atlas, alveolar cell trajectory, and distribution of potential viral receptors are also similar to those of humans, explaining the superiority of cotton rats as an RSV infection model. The target cells of RSV, including club cells, secretory2 cells, mesothelial cells, and nerve-associated astrocytes, were expanded after infection. We also identified differential transcriptional regulators, specific antiviral proteins, and cytokines that could be translated into potential clinical markers in humans. Candidate host factors were also identified, which will enable the exploration of host-RSV interactions and offer a source of therapeutic targets.
DOI: 10.15468/dl.9kn6ce
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence)",
 "Country is one of (India, China, Pakistan, Nepal, Bhutan)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Moschus",
 "Year 2000-2025"
 ]
}

 The dataset includes 70 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013364-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17054816
title: OULAD Early Warning – Reproducibility Artifacts (LOMO, weeks 2–12)

description: This record contains ONLY generated artifacts (CSV, figures, LaTeX snippets, checksums)for the paper “A Leakage-Free Benchmark for Early Warning on OULAD”.Access is restricted — For academic verification only. Raw OULAD data are NOT redistributed.

Content• outputs/figs: AUC/PR-AUC by week with 95% CIs, reliability diagrams, top-k curves, decision curves.• outputs/tables: model summaries, bootstrap CIs, top-k metrics, LaTeX table snippets.• manifests/CHECKSUMS.sha256 (+ .sha256) to verify integrity of every file.• meta/: conda.yml and run_e2e.sh used to regenerate results (requires original OULAD and code repo).

How to verify1) Download and unzip artifacts_v1.0.0.zip.2) Run: `sha256sum -c manifests/CHECKSUMS.sha256`  (all should be OK).3) See meta/run_e2e.sh for end-to-end commands (anti-leakage: features ≤ week t, scaler on train MPs, isotonic on validation MPs).

Provenance• Code repository (MIT): https://github.com/nguyentrungkiet/oulad-leakage-free-benchmark (tag v1.0.0).• The archive does NOT include OULAD raw data.

Contact for access/support: ketnt@tdmu.edu.vn.
DOI: 10.5281/zenodo.17054815
title: OULAD Early Warning – Reproducibility Artifacts (LOMO, weeks 2–12)

description: This record contains ONLY generated artifacts (CSV, figures, LaTeX snippets, checksums)for the paper “A Leakage-Free Benchmark for Early Warning on OULAD”.Access is restricted — For academic verification only. Raw OULAD data are NOT redistributed.

Content• outputs/figs: AUC/PR-AUC by week with 95% CIs, reliability diagrams, top-k curves, decision curves.• outputs/tables: model summaries, bootstrap CIs, top-k metrics, LaTeX table snippets.• manifests/CHECKSUMS.sha256 (+ .sha256) to verify integrity of every file.• meta/: conda.yml and run_e2e.sh used to regenerate results (requires original OULAD and code repo).

How to verify1) Download and unzip artifacts_v1.0.0.zip.2) Run: `sha256sum -c manifests/CHECKSUMS.sha256`  (all should be OK).3) See meta/run_e2e.sh for end-to-end commands (anti-leakage: features ≤ week t, scaler on train MPs, isotonic on validation MPs).

Provenance• Code repository (MIT): https://github.com/nguyentrungkiet/oulad-leakage-free-benchmark (tag v1.0.0).• The archive does NOT include OULAD raw data.

Contact for access/support: ketnt@tdmu.edu.vn.
DOI: 10.15468/dl.2jqack
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kohleria inaequalis ocellata"
 ]
}

 The dataset includes 173 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013366-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36czhb
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium nigrescens",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013367-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4hwnn
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prosopis nuda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013365-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gk3czn
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium nigrescens",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 168 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013368-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3zjxq
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "DatasetKey is Barcode de Bambúes nativos de México",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 144 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013370-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8vnbwx
title: Occurrence Download

description: A dataset containing 4735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prosopis pubescens",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4735 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013371-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fn6q2j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium squarrosum",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013372-250914085247600/datasets/export for details.
DOI: 10.15468/dl.p3w235
title: Occurrence Download

description: A dataset containing 6791845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "OccurrenceStatus is Present",
 "Year 2000-2025"
 ]
}

 The dataset includes 6791845 records from 3752 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013277-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s95eve
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium macellum Johanss."
 ]
}

 The dataset includes 95 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024178-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ktejf
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus laetus Chun & C.C.Huang ex Y.C.Hsu & H.W.Jen"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009654-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxshny
title: Occurrence Download

description: A dataset containing 1447 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes aegypti (Linnaeus, 1762)"
 ]
}

 The dataset includes 1447 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012276-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3w4m7y
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clermontia peleana Rock"
 ]
}

 The dataset includes 95 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092710-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lqvenq
title: Occurrence Download

description: A dataset containing 39278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Vandenboschia speciosa (Willd.) G.Kunkel",
 "TaxonKey is Abies pinsapo Boiss.",
 "TaxonKey is Narcissus pseudonarcissus L.",
 "TaxonKey is Moehringia intricata Willk.",
 "TaxonKey is Papaver lapeyrousianum Gutermann",
 "TaxonKey is Halocnemum strobilaceum (Pall.) M.Bieb.",
 "TaxonKey is Salix hastata L.",
 "TaxonKey is Equisetum palustre L.",
 "TaxonKey is Isoetes durieui Bory",
 "TaxonKey is Juniperus oxycedrus L."
 ]
 }
 ]
}

 The dataset includes 39278 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012276-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5hbcw
title: Occurrence Download

description: A dataset containing 31536 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Thymelicus lineola (Ochsenheimer, 1808))",
 "Year is greater than or equal to 1973",
 "Year is less than or equal to 2019",
 "Country is one of (United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 31536 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092728-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5uq57
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lomatogoniopsis ovatifolia T.N.Ho & S.W.Liu"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009717-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbdctk
title: Occurrence Download

description: A dataset containing 302888 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-12.5 30,-12.5 35,7.5 35,7.5 30,-12.5 30))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 302888 records from 359 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012276-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kd5v4j
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litsea tibetana Yen C.Yang & P.H.Huang"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009711-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uszfqh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella procera Alston"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092740-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.odru8q
title: Occurrence Download

description: A dataset containing 2255 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Plant Systematics Laboratory, Ajou University, Korea"
 ]
}

 The dataset includes 2255 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012276-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdczjt
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litsea honghoensis H.Liou, 1933"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009689-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d739jf
title: Occurrence Download

description: A dataset containing 2458 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Records of parasites of domestic animals in Ukraine (according to the State Service of Ukraine for Food Safety and Consumer Protection)"
 ]
}

 The dataset includes 2458 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092771-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.