cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.948553
title: Computed tomography analysis of multicorer IP21_060MUC, core 12

description: Selected multicorer cores and ROV push cores (IP21_021-17, IP21_021-18, IP21_061, IP21_061-19, IP21_061-20) of R/V Island Pride cruise IP21 were scanned using a Philips Brilliance iCT Elite 256 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte, with an X- ray source voltage of 120 kV and a current of 300 mA. The CT image stacks have a physical resolution of 0.293 mm in the x and y directions and 0.625 mm resolution in the z direction (collimation; 0.3 mm reconstruction interval). Images were reconstructed using the filtered Back Projection (fBP) mode and a bone kernel (YB (Enhanced)).The data were processed with the ZIB edition of the Amira software (version 2019.51; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;~1 mm, open bioturbation traces, an unidentified organism, the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.1594/pangaea.948554
title: Computed tomography analysis of pushcorer IP21_061PUC59, core 19

description: Selected multicorer cores and ROV push cores (IP21_021-17, IP21_021-18, IP21_061, IP21_061-19, IP21_061-20) of R/V Island Pride cruise IP21 were scanned using a Philips Brilliance iCT Elite 256 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte, with an X- ray source voltage of 120 kV and a current of 300 mA. The CT image stacks have a physical resolution of 0.293 mm in the x and y directions and 0.625 mm resolution in the z direction (collimation; 0.3 mm reconstruction interval). Images were reconstructed using the filtered Back Projection (fBP) mode and a bone kernel (YB (Enhanced)).The data were processed with the ZIB edition of the Amira software (version 2019.51; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;~1 mm, open bioturbation traces, an unidentified organism, the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.1594/pangaea.948555
title: Computed tomography analysis of pushcorer IP21_061PUC71, core 20

description: Selected multicorer cores and ROV push cores (IP21_021-17, IP21_021-18, IP21_061, IP21_061-19, IP21_061-20) of R/V Island Pride cruise IP21 were scanned using a Philips Brilliance iCT Elite 256 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte, with an X- ray source voltage of 120 kV and a current of 300 mA. The CT image stacks have a physical resolution of 0.293 mm in the x and y directions and 0.625 mm resolution in the z direction (collimation; 0.3 mm reconstruction interval). Images were reconstructed using the filtered Back Projection (fBP) mode and a bone kernel (YB (Enhanced)).The data were processed with the ZIB edition of the Amira software (version 2019.51; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;~1 mm, open bioturbation traces, an unidentified organism, the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.1594/pangaea.948556
title: Computed tomography analysis of multicorer IP21_070MUC, core 13

description: Selected multicorer cores and ROV push cores (IP21_021-17, IP21_021-18, IP21_061, IP21_061-19, IP21_061-20) of R/V Island Pride cruise IP21 were scanned using a Philips Brilliance iCT Elite 256 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte, with an X- ray source voltage of 120 kV and a current of 300 mA. The CT image stacks have a physical resolution of 0.293 mm in the x and y directions and 0.625 mm resolution in the z direction (collimation; 0.3 mm reconstruction interval). Images were reconstructed using the filtered Back Projection (fBP) mode and a bone kernel (YB (Enhanced)).The data were processed with the ZIB edition of the Amira software (version 2019.51; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;~1 mm, open bioturbation traces, an unidentified organism, the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.1594/pangaea.948557
title: Computed tomography analysis of multicorer IP21_071MUC, core 14

description: Selected multicorer cores and ROV push cores (IP21_021-17, IP21_021-18, IP21_061, IP21_061-19, IP21_061-20) of R/V Island Pride cruise IP21 were scanned using a Philips Brilliance iCT Elite 256 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte, with an X- ray source voltage of 120 kV and a current of 300 mA. The CT image stacks have a physical resolution of 0.293 mm in the x and y directions and 0.625 mm resolution in the z direction (collimation; 0.3 mm reconstruction interval). Images were reconstructed using the filtered Back Projection (fBP) mode and a bone kernel (YB (Enhanced)).The data were processed with the ZIB edition of the Amira software (version 2019.51; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;~1 mm, open bioturbation traces, an unidentified organism, the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.1594/pangaea.948558
title: Computed tomography analysis of multicorer IP21_078MUC, core 15

description: Selected multicorer cores and ROV push cores (IP21_021-17, IP21_021-18, IP21_061, IP21_061-19, IP21_061-20) of R/V Island Pride cruise IP21 were scanned using a Philips Brilliance iCT Elite 256 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte, with an X- ray source voltage of 120 kV and a current of 300 mA. The CT image stacks have a physical resolution of 0.293 mm in the x and y directions and 0.625 mm resolution in the z direction (collimation; 0.3 mm reconstruction interval). Images were reconstructed using the filtered Back Projection (fBP) mode and a bone kernel (YB (Enhanced)).The data were processed with the ZIB edition of the Amira software (version 2019.51; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;~1 mm, open bioturbation traces, an unidentified organism, the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.1594/pangaea.948561
title: Computed tomography analysis of multicorer IP21_078MUC, core 16

description: Selected multicorer cores and ROV push cores (IP21_021-17, IP21_021-18, IP21_061, IP21_061-19, IP21_061-20) of R/V Island Pride cruise IP21 were scanned using a Philips Brilliance iCT Elite 256 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte, with an X- ray source voltage of 120 kV and a current of 300 mA. The CT image stacks have a physical resolution of 0.293 mm in the x and y directions and 0.625 mm resolution in the z direction (collimation; 0.3 mm reconstruction interval). Images were reconstructed using the filtered Back Projection (fBP) mode and a bone kernel (YB (Enhanced)).The data were processed with the ZIB edition of the Amira software (version 2019.51; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters &gt;~1 mm, open bioturbation traces, an unidentified organism, the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined.
DOI: 10.15468/dl.rut4an
title: Occurrence Download

description: A dataset containing 553762 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carallia pectinifolia W.C.Ko, Populus trichocarpa Torr. & A.Gray ex Hook., Populus deltoides W.Bartram ex Marshall, Populus wilsonii C.K.Schneid., Salix mesnyi Hance, Vernicia fordii (Hemsl.) Airy Shaw, Manihot esculenta Crantz, Acer yangbiense Y.S.Chen & Q.E.Yang, Theobroma cacao L., Arabidopsis thaliana (L.) Heynh., Averrhoa carambola L., Combretum micranthum G.Don, Eucalyptus grandis W.Hill ex Maiden, Corymbia citriodora (Hook.) K.D.Hill & L.A.S.Johnson, Melaleuca alternifolia (Maiden & Betche) Cheel, Lagerstroemia speciosa (L.) Pers., Punica granatum L., Ficus carica L., Vitis vinifera L., Vitis amurensis Rupr., Handroanthus impetiginosum (Mart. ex DC.) Mattos, Salvia bowleyana Dunn, Thymus quinquecostatus Čelak., Antirrhinum hispanicum Chav., Coffea canephora Pierre ex A.Froehner, Capsicum baccatum L., Camellia sinensis (L.) Kuntze, Rhododendron delavayi Franch., Oryza sativa L., Colocasia esculenta (L.) Schott)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 553762 records from 2741 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088350-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29128961
title: Supplementary material.docx

description: The number of successful trials for each participant
DOI: 10.6084/m9.figshare.29128961.v1
title: Supplementary material.docx

description: The number of successful trials for each participant
DOI: 10.6069/9hx4-mg57
title: Mass spectrometry-based quantification of proteins and post-translational modifications in dried blood: longitudinal sampling of patients with sepsis in Tanzania

description: The proteomic analysis of blood is routine for disease phenotyping and biomarker development. Whole blood is commonly separated into soluble and cellular fractions. However, this can introduce pre-analytical variability; and analysis of a single component (which is common) may ignore important pathophysiology. We have recently developed methods for the facile processing of dried blood for mass spectrometry-based quantification of proteins, N-glycopeptides and phosphopeptides. Here, we applied this approach to 38 patients in Tanzania who presented to the hospital with sepsis. Blood was collected on Mitra devices at presentation and 1, 3 and 28-42 days post-enrollment. Processing of 96 total samples was performed in plate-based formats and completed within two days. Approximately 2,000 protein groups and 8,000 post-translational modifications were quantified in 3 LC-MS/MS runs at ~1.5 hours per sample. Analysis of differential abundance revealed blood proteome signatures of acute phase response and neutrophilic inflammation that partially resolved at the 28-42 day timepoint. Numerous analytes correlated with clinical laboratory values for c-reactive protein and white blood cell counts, as well as the Universal Vital Assessment illness severity score. These datasets serve as proof-of-concept for large scale MS-based (sub)phenotyping of disease using dried blood and are available via the ProteomeXchange consortium (PXD060377).
DOI: 10.15468/dl.36f86h
title: Occurrence Download

description: A dataset containing 98665 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oncorhynchus keta (Walbaum, 1792)"
 ]
}

 The dataset includes 98665 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007131-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86g9qj
title: Occurrence Download

description: A dataset containing 2160306223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2160306223 records from 47642 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172771-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15251742
title: atlantirivulus_ribeirensis_spades_01.fasta.gz
DOI: 10.5281/zenodo.15251743
title: atlantirivulus_ribeirensis_spades_01.fasta.gz
DOI: 10.15468/dl.pyfskw
title: Occurrence Download

description: A dataset containing 14489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthis flammea (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Country is Norway",
 "DatasetKey is Norwegian Species Observation Service",
 "Year is 2013",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14489 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252767-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4c9wt
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sageretia lucida Merr."
 ]
}

 The dataset includes 55 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248576-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6d8q6x
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campylotropis yunnanensis (Franch.) Schindl.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 58 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263283-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7c4g7k
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stenogrammitis hildebrandtii (Hieron.) Labiak"
 ]
}

 The dataset includes 43 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252874-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9r7ye
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nomada aswensis Tsuneki, 1973",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 70 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221413-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r56ktj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pityogenes chalcographus (C.Linnaeus, 1760)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221408-220831081235567/datasets/export for details.
DOI: 10.15468/dl.6skm9q
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acrocephalus dumetorum Blyth, 1849",
 "HasCoordinate is true",
 "Country is Norway",
 "DatasetKey is Norwegian Species Observation Service",
 "Year is 2005",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252875-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4xf3r
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caragana boisii C.K.Schneid.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 29 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263284-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24a5df
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gilia capitata subsp. staminea (Greene) V.E.Grant)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 113 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066791-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rcaxnx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygraphus nigrielytris Niisima, 1913",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221415-220831081235567/datasets/export for details.
DOI: 10.15468/dl.hgfwr3
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acrocephalus arundinaceus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Country is Norway",
 "DatasetKey is Norwegian Species Observation Service",
 "Year is 2007",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252877-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsru3s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypsicera nigribasis Momoi & Kusigemati, 1970",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221414-220831081235567/datasets/export for details.
DOI: 10.15468/dl.vgzbmz
title: Occurrence Download

description: A dataset containing 83340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((331.43837 38.35584,331.99248 38.35584,331.99248 38.57538,331.43837 38.57538,331.43837 38.35584))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 83340 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104469-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6m5pj
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polypedilum tigrinum (Hashimoto, 1983)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 108 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221418-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6nkpn
title: Occurrence Download

description: A dataset containing 5467 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Accipiter nisus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Country is Norway",
 "DatasetKey is Norwegian Species Observation Service",
 "Year is 2009",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5467 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252876-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zu797n
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caragana chinghaiensis Y.X.Liou",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263285-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.