cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/35abex
title: The electrical capacitance (F) of the bio-sensor, the carbon dioxide (%) release by the meat and the corresponding microbial count (UCF/g)

description: This document describes the evolution of electrical capacitance of the gluten due to the evolution of carbone dioxid concentration that depends on the microbial growth. This table is in connection with the deliverable 3.2. The objective of the deliverable 3.2 was to identify and characterize the active functionalities, namely antimicrobial compounds and oxygen scavengers, and the intelligent functionalities, namely the RFID based biosensor, to be included in packaging in order to improve and control the storage of targeted products packaged with the new PHBV packaging. The RFID biosensor was calibrated by linking the impedance evolution of the biocaptor (protein layer) to the gas evolution in the headspace (which depends on the microorganism growth). The smart packaging concept proposed in GLOPACK Project is based on the coupling of RFID technology and a biosensor (biopolymer). The biobased sensor is the gluten that presents some electrical properties. Modification of environmental properties may change the dielectric properties of the gluten : as relative humidity, CO2 content etc. During the storage of packaged food, the headspace gas content evolves (because of gas absorption, gas leakages, microbial growth…). Then the wheat gluten network changes and so the dielectric properties change too. Thus, the monitoring of these dielectric properties is supposed to provide an indication of food quality over time. This datasheet presents the experimental results about meat product in a modified atmosphere packaging (20% CO2, 80% O2) at 20°c during 40 hours.Tthe electrical capacitance (F), the carbon dioxide (%) were measured and the microorganisms counted (UCF/g). We notice that the electrical capacitance (corresponding to the electrical properties of the biopolymer) and the CO2 percentage evolve in the same way that the microorganisms evolution versus time.
DOI: 10.15454/3cxc1j
title: MRI acquisition data and animal data

description: MRI acquisition data and animal data
DOI: 10.15454/3keswn
title: Data and code to estimate the quantity of molecular extractives along the forestry supply chain for the species Abies alba in the Grand Est region, France

description: Below is a user manual for scientists who want to reproduce the results provided by Pichancourt et al., (XXX to be added when accepted for submission) - Step 1 - Download and install the supply chain software as a Java bin: https://sourceforge.net/p/lerfobforesttools/wiki/CAT/ - Step 2 - Run the supply chain software and open forest growth simulations: https://sourceforge.net/p/lerfobforesttools/wiki/CAT%20-%20User%20interface/ The user needs to import the first growth simulation (representing the business-as-usual harvesting scenario S1) from this link below: - Step 3 - Open the supply chain model of silver fir for the Grand-Est region, and run the simulations The supply chain model of silver fir for the Grand-Est region can be downloaded in the folder 1. The user can understand how to use the flux manager module in order to open or design a forestry supply chain, by following this link: https://sourceforge.net/p/lerfobforesttools/wiki/CAT%20-%20Flux%20Manager/ If needed, the results of this step based on the first growth simulation scenario can already be found here: Step 4 - Redo Step 2 and 3 but now with this second growth simulation (low intensity harvesting scenario S2): If needed, the results of step 4 generated with this second growth simulation can already be found here: Step 5 - Redo Steps 2 and 3 but now then with this third growth simulation (high intensity harvesting scenario S3): If needed, the results of step 5 generated with this third growth simulation can already be found here: Step 6 - Open saved files with Chemical accounting tool and run it to produce figures used in the manuscript. All the files of the chemical module can be found here: The MAIN_RUNFIRST.R is the one that needs to be openned to run all the others. Be aware that files generated in steps 3, 4 and 5 are used. It is thus better to check the location of the files based on what is specified in the R files MAIN_RUNFIRST.R and Data_Extraforest.R. Also the names of the files generated from steps 3, 4 or 5 must be of this form of name: "S1" + "Abies" +"CarbonStockAndFluxEvolution"+ extension ".csv" NB1: access the GIS model, forest growth model and NFI data GIS model and data can be found using the following temporary link provided by the IGN ( French National Institute of Geographical and forest Information): http://extraforest.ign.fr/. To access the GIS website, a temporary login and password can be asked by sending an email to the project leader NB2: access the original chemical data Raw chemical data can be accessed on demand by sending an email to the project leader
DOI: 10.15454/3kmd4y
title: RPG complété 2018 département 61

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 61. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/3lqz8t
title: UML profile for Spatial Data Warehouse

description: ICSOLAP is a UML profile for designing complex Spatial Data Warehouse. It is implemented using MagicDraw
DOI: 10.15454/3si1gb
title: Annotation data about Multi Criteria Assessment Methods used in Plant Health and Environment: the French National Institute for Agricultural Research (INRA-SPE) experience

description: This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers belonging to the Plant Health and Environment department. Its research aims to contribute to the development of a productive but environmentally safer agriculture by producing both academic and operational knowledge, by providing methods and tools for crop protection, risk and impact assessment, and by contributing to professional and public education.
DOI: 10.15454/3uxwb4
title: RPG complété 2018 département 15

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 15. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/48436v
title: PPN-specific M. incognita proteins with no hits against NR

description: Accession numbers of M. incognita proteins specific to plant-parasitic nematodes as determined by the orthofinder analysis and returning no significant hits against the NCBI's NR according to Diamond.
DOI: 10.15454/4bq0lw
title: tree bending tests

description: Rubber tree bending tests provided by T. Fourcaud (CIRAD)
DOI: 10.15454/4sfe64
title: CO2 solubility and composition data of food products annotated from the scientific litterature

description: This dataset regroups the solubility to CO2 measure and composition of different food products. Solubility measures were gathered from scientific literature found on Web of Science (https://www.webofscience.com/) using the keywords “CO2 solubility” and “Food” from 2016 to 2021, and complemented with references (pure oil, pure water). We restricted ourselves to meat, fish and cheese products. When available in the article, the food product’s composition (fat, proteins, sugar, salt, water) was directly added to the dataset. On the contrary, when missing, we looked for food products with similar label in open-source databases. In this case, the food product’s composition’s origin is indicated in the dataset for a complete transparency. Data is structured by the @Web ontology and can be consulted at the given link. This dataset is composed of two files: a csv file containing information about the articles and their food products; and the jupyter notebook used for creating this csv.
DOI: 10.15454/5cwcll
title: Data from Propionibacterium freudenreichii CIRM-BIA 129 osmoadaptation coupled to acid-adaptation increases its viability during freeze-drying

description: Propionibacterium freudenreichii CIRM-BIA 129 osmoadaptation and osmoadaptation coupled to acid adaptation were studied thanks to proteomics. Bacteria were harvested at the begining of stationary phase. Protein trypsin digestion were performed in solution.The data set contains 45 files of NanoLC-MS/MS analysis, acquired on a Qexactive mass spectrometer.Design: 3 classes (control:"YEL", osmoadaptated: "NaCl" and osmoadapted coupled to acid adaptation: "pH=5"), 5 biological replicates. All samples were injected 3 times
DOI: 10.15454/5ln8fk
title: RPG complété 2019 département 68

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 68. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/65wkz0
title: The role of energy, serine, glycine, and 1-carbon units in the cost of nitrogen excretion in mammals and birds

description: The efficiency with which dietary protein is used affects the nitrogen excretion by the animal and the environmental impact of animal production. Urea and uric acid are the main nitrogen excretion products resulting from amino acid catabolism in mammals and birds, respectively. Nitrogen excretion can be reduced by using low-protein diets supplemented with free amino acids to ensure that essential amino acids are not limiting performance. However, there are questions whether the capacity to synthesize certain non-essential amino acids is sufficient when low-protein diets are used. This includes glycine, which is used for uric acid synthesis. Nitrogen excretion not only implies a nitrogen and energy loss in the urine, but energy is also required to synthesize the excretion products. The objective of this study is to quantify the energy and metabolic requirements for nitrogen excretion products in the urine. The stoichiometry of reactions to synthesize urea, uric acid, allantoin, and creatinine was established using information from a publicly available database. The energy cost was at least 40.3, 60.7, 64.7, and 65.4 kJ/g excreted N for urea, uric acid, allantoin, and creatinine, respectively, of which 56, 56, 47, and 85% was retained in the excretion product. Data from a broiler study were used to carry out a flux balance analysis for nitrogen, serine, glycine, and so-called 1-carbon units. The flux balance indicated that the glycine intake was insufficient to cover the requirements for growth and uric acid excretion. The serine intake was also insufficient to cover the glycine deficiency, underlining the importance of the de novo synthesis of serine and glycine. One-carbon units are also a component of uric acid, and can be synthesized from serine and glycine. There are indications that the de novo synthesis of 1-carbon units may be a “weak link” in metabolism, because of the stoichiometric dependency between the synthesized 1-carbon units and glycine. The capacity to catabolize excess 1 carbon units may be limited, especially in birds fed low-protein diets. Therefore, there may be an upper limit to the 1-carbon-to-glycine requirement ratio in relation to nutrients that supply 1-carbon units and glycine. The ratio can be reduced by increasing uric acid excretion (i.e., reducing protein deposition) or by dietary supplementation with glycine. The hypothesis that the 1-carbon-to-glycine requirement ratio should be lower than the supply ratio provides a plausible explanation for the growth reduction in low-protein diets and the positive response to the dietary glycine supply.
DOI: 10.15454/6z5iah
title: Mayotte rivers: databases used for the development of diatom and macroinvertebrates water quality tools.

description: Données ayant servi au projet "Développement d’outils de bio-indication «phytobenthos» et «macro-invertébrés benthiques» pour les eaux de surface continentales de Mayotte". Ce projet a été financé par l'AFB, Agence Française pour la Biodiversité Les correspondants AFB: Olivier MONNIER et Yorick REYJOL (chargés de mission)
DOI: 10.15454/33s25w
title: Simulation Code for comparison of uni- and bivariate analysis in mixed cropping experiments

description: Simulation code for Haug, Benedikt, Monika M. Messmer, Jérôme Enjalbert, Isabelle Goldringer, Emma Forst, Timothée Flutre, Tristan Mary-Huard, and Pierre Hohmann. “Advances in Breeding for Mixed Cropping – Incomplete Factorials and the Producer/Associate Concept”, Manuscript submitted for publication
DOI: 10.15454/3edmcp
title: Wheat Crop Ontology

description: The Wheat Crop Ontology list reference variables used for field or greenhouse experimentations and observations on Triticeae (Triticum, Hordeum, Aegilops, …). It is an international initiative gathering American and European contributions. Terms are organized following the Crop Ontology standard where each variable is composed by a triplet: (i) a trait (phenotypique or environmental), i.e. the studied character, (ii) a method, the measurement protocol and (iii) a scale, the unit of measurement or scoring scale. This ontology is used in major infrastructures including among others CGIAR (CIMMYT), Elixir, Emphasis, INRA. This ontology is published on the following portals : Crop Ontology INRA URGI Phenoytping Ontology portal
DOI: 10.15454/3xfr49
title: Shelf life test on falafel packed with active PHBV material

description: The two files in attachment: First shelf life test on falafel packed with active PHBV material (encapsulated carvacrol) Second shelf life test on falafel packed with active PHBV material (carvacrol) In both files, the sensorial analyses performed by LVEB.are added
DOI: 10.15454/4kvrwy
title: Select SNP for Imputation software

description: Select SNP subset for Imputation (SS4I) is a tool dedicated to the selection of a sub-panel of SNP for the design of a low density genotyping chip. This program, written in Python, allow the selection of SNP subset according to a chosen linkage disequilibrium (r2) threshold on a chromosome scale.
DOI: 10.15454/560lsh
title: Microsatellite datasets of cultivated apricot accessions and of Armeniaca spp. natural populations located in Central Asia and in China

description: An extended sampling of wild and cultivated apricots across Eurasia including the Prunus armeniaca, P. sibirica, P. mume and P. manshurica species was performed to infer the history of wild apricot species divergence and of domestication processes of apricot, based on microsatellite markers and approximate Bayesian computation.
DOI: 10.15454/5gzrsz
title: Data and scripts of the article: Predicting the dynamics of enteric methane emissions based on intake kinetic patterns in dairy cows fed diets containing either wheat or corn

description: Important: the corrected data set can be found at https://doi.org/10.15454/CDUKML
DOI: 10.15454/75pgc6
title: Facteur de pondération W utilisé dans l'indice de connectivité sédimentaire IC de Cavalli et al. appliqué sur les Alpes du Nord (France)

description: L'Indice de Connectivité IC de Cavalli et al (2013) a été estimé sur une centaine de bassins versants des Alpes du Nord française dans le cadre de l'Action 3 du projet HydroDemo (Morel et al. 2022). Cet indice est ensuite utilisé pour estimer la production sédimentaire de ces bassins versants à travers des formules empiriques (Morel et al. 2022). Afin de permettre l'utilisation de ces approches sur d'autres bassins versants du périmètre, il est nécessaire d'estimer l'Indice de Connectivité IC avec le même Facteur de pondération W que celui utilisé dans le cadre du projet. Ce dataset est un raster de ce Facteur de pondération W à l'échelle du périmètre étudié. Ce raster a été généré via le logiciel autonome et gratuit «SedInConnect»(Téléchargeable au lien suivant: https://github.com/HydrogeomorphologyTools/SedInConnect_2.3 , développé par Crema et Cavalli, 2018). Sa préparation est décrite en détail dans le rapport de Morel et al. (2022). Elle s'est basée sur le MNT des Alpes du Nord à un résolution de 25 m. Le calcul de l'IC à mener dans le cadre de l'utilisation des formules HydroDemo est à réaliser sur la même résolution. Références: -Cavalli M, Trevisani S, Comiti F, Marchi L. 2013. Geomorphometric assessment of spatial sediment connectivity in small Alpine catchments. Geomorphology 188 : 31–41. DOI: 10.1016/j.geomorph.2012.05.007 -Crema S, Cavalli M. 2018. SedInConnect: a stand-alone, free and open source tool for the assessment of sediment connectivity. Computers Geosciences 111 : 39–45. DOI: 10.1016/j.cageo.2017.10.009 -Maxime Morel, Guillaume Piton, Guillaume Evin, Caroline Le Bouteiller. Projet HYDRODEMO : Évaluation de l’aléa torrentiel dans les petits bassins versants des Alpes du Nord : Action 3 : Caractériser la production sédimentaire. [Rapport de recherche] INRAE. 2022. https://hal.archives-ouvertes.fr/hal-03549827
DOI: 10.15454/7gbguq
title: Isotopic ratios in freshwater gammarids (caged) and wild fish from 15 continental sites (2018) and one reference site (2019)

description: This dataset reports δ13C and δ15N measurements in caged gammarids (Gammarus fossarum) and wild fish (chub Squalius cephalus; barbel Barbus barbus; roach Rutilus rutilus) from 15 sites in French rivers. Gammarids were collected at a pristine site, sorted in order to select male individuals of about 2 mm size, and exposed in the field for three weeks, without food added (AFNOR standard XP T 90-721 (2019) Encagement in situ de gammares pour la mesure de la bioaccumulation de substances chimiques). This was repeated three times (June, September and November) in 2018. Fish were caught by electrofishing between July and November, 2018. Each fish sample is composed of several individualsof the same size class. δ13C and δ15N were analyzed by isotopic mass spectrometry after separation of N and C by chromatography. The dataset comprises 55 gammarid records of each isotopic ratio, including 10 records from a reference site (T0), and 15 fish records for both δ13C and δ15N.
DOI: 10.15454/3ppkcl
title: Hydrology modelling R packages: codes for simulating streamflow using one parameter set

description: Example codes to run 8 hydrological modelling R packages. Each script enables application of the models on a simple hydrology example.
DOI: 10.15454/3qripa
title: Exome capture genotyping data on the pea Architecture Multi-Stress collection (Peamust project)

description: In the context of Work Package 3 of the PeaMUST project , Genotyping data obtained by exome capture on a 240 accessions pea germplasm panel (AMS collection).
DOI: 10.15454/48ifbq
title: Results of analysing success and failure factors based on triggers

description: Three characteristic triggers were selected to build business concepts by business model canvas around them. Selected triggers: 1. Avoiding or reducing pollution 2. Environmental awareness and need for sustainable development 3. Market need & opportunity According to NoAW MS24 Milestone (2019) PHBV/PHA and biocomposites were selected for further evaluation and market analysis. The reason why these were selected in WP 5.4 are as two of the three cases to build Business models are based on analysed triggers.
DOI: 10.15454/4sg77p
title: RPG complété 2018 département 42

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 42. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/59fvyi
title: Intra-/Inter-specific Larix sub-diallel farm test (microsatellites markers).

description: Intra-/Inter-specific diallel mating design of Larix to understand heterosis basis. Amplification of 13 microsatellites markers (2 multiplexes). Produced by the Artemis BRC (BRC4F-23). Plans de croisement cognitif et croisements exploratoires. Amplification de 13 marqueurs microsatellites (2 multiplexes). Produit par le CRB Artemis (BRC4F-23).
DOI: 10.15454/5qerf6
title: Metadata of OLA-IS : information system of the lakes observatory.

description: The IS-OLA user will find here some informations on the sites studied (geographic coordinates), the names of the variables and units, pictures of some lakes and other general information. Further information can be find on Anaee-F metadatas web site: For Lake Annecy : http://w3.avignon.inra.fr/geonetwork_anaee/srv/eng/catalog.search#/metadata/09d4c15b-fd36-482f-aae1-68fe1570dedf For Lake Bourget : http://w3.avignon.inra.fr/geonetwork_anaee/srv/fre/catalog.search#/metadata/82c748ca-d656-46ac-b883-d353e75a54c7 For Lake Geneva (Leman) : http://w3.avignon.inra.fr/geonetwork_anaee/srv/eng/catalog.search#/metadata/d7d7f3bb-86dc-4c10-9661-dfa293c73862 For Lake Aiguebelette: http://w3.avignon.inra.fr/geonetwork_anaee/srv/fre/catalog.search#/metadata/d3a2ae2b-07e4-4fdc-9057-21ec926c633c For altitude lakes (sentinels) :http://w3.avignon.inra.fr/geonetwork_anaee/srv/fre/catalog.search#/metadata/b8249490-1ef8-458a-9bb1-ddd320749dc4
DOI: 10.15454/7kuth1
title: Performance of a non-invasive methodology for assessing oxygen diffusion in liquid and solid food products - Oxygen diffusivity in water, Miglyol 829, Gel T and mixtures of Miglyol 829 and Gel T

description: value unavailable
DOI: 10.15454/4vvuis
title: Données des croissances des génisses élevées au distributeur automatique de lait de 2005 à 2016 et celles élevées sous nourrices de 2016 à 2018 sur l'Installation Expérimentale ASTER-Mirecourt

description: L’expérimentation-système mise en place sur l’installation expérimentale (IE) de l’unité de recherche INRAE ASTER de Mirecourt est un dispositif mené à l’échelle de l’exploitation agricole. De 2004 à 2015, deux systèmes de production de polyculture élevage conduits selon le cahier des charges de l’agriculture biologique et dans une logique de forte autonomie, ont été testés sur les 240 ha du dispositif expérimental. Le système herbager est un système bovin laitier qui vise à valoriser la majorité des prairies permanentes du dispositif : 40 vaches laitières et les élèves utilisent environ 80 ha de prairies permanentes en maximisant le pâturage. La valorisation de l’herbe par le pâturage est synonyme d’économie en intrants, en mécanisation mais aussi en matériau de litière voire en bâtiments (stockage et élevage). Cette valorisation passe par des vêlages groupés sur 3 mois en fin d’hiver afin de synchroniser les lactations et la forte pousse de l’herbe du printemps (herbe abondante et riche au plan nutritif). Le système de polyculture élevage est un système bovin laitier et céréalier qui valorise 105 ha de terres cultivables et 55 ha de prairies permanentes. Les vêlages sont groupés sur 3 mois en fin d’été afin (i) de produire du lait à contre-saison par rapport au Système Herbager, (ii) de valoriser les foins de luzerne et de prairies temporaires dans l’alimentation hivernale des vaches en lactation. Ces deux systèmes ont été revisités en 2016. Pour ne décrire que l’atelier bovin laitier, les deux systèmes laitiers ont été regroupés en un seul système proche du système herbager préexistant (vêlages groupés de printemps, alimentation exclusivement herbagère : pâturage maximisé et foin) mais dont certains éléments de conduite diffèrent en vue de répondre à de nouveaux objectifs : monotraite (diminution du travail d’astreinte amélioration des performances de reproduction), croisement de races (amélioration de l’efficacité des vaches au pâturage) et élevage de veaux sous vaches nourrices (réduction du travail d’astreinte, amélioration de la croissance et de la précocité des génisses dans une optique de vêlage à 24 mois). Les données concernent les croissances des génisses du système herbager de 2005 à 2015 et du système mis en place depuis 2016.
DOI: 10.15454/4wfleo
title: RPG complété 2018 département 17

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 17. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020