cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6395302
title: Comet assay annotation data for comet segmentation and scoring (1037 comet assay images)

description: Comet assay annotation images used in the following paper

Hong, Y., Han, HJ., Lee, H. et al. Deep learning method for comet segmentation and comet assay image analysis. Sci Rep 10, 18915 (2020). https://doi.org/10.1038/s41598-020-75592-7

DeepComet online service website: https://ad3.io/

sign up->dashboard->APPs->Deep Comets->new job

 

Two biology researchers who were experienced in the comet assay for over half a year under the guidance of a toxicology expert in the assay annotated the images independently and compared each other’s work to ensure consistency. Here, the VGG Image Annotator sofware was used to annotate the images manually. We annotated the intact comet heads without a tail using a circular region tool that outputs the center and radius of the circle. Further, comets with a tail and DNA damage were annotated with a polyline tool, where the frst dot was marked at the center of a comet head, and the second dot was marked at the bottom of the comet head. Tese two points were used to identify the head of a comet. Subsequently, dots were marked along the boundary of the comet tail counterclockwise from the second dot. Te total number of dots were at least eight per each comet.

Comets can be sorted into non-ghost cells with a distinct head and tail, and ghost cells with a small or no nucleoid head and a broad tail. The ghost cells are usually classifed as the highest degree of DNA damage by visual scoring. Until now, there is a controversy over the cause of ghost cells and how they should be analyzed appropriately. Therefore, our method is designed to classify these two kinds of cells, so one can use some custom analysis techniques for ghost cells.

The comets in our datasets were all classifed as non-ghost or ghost cells. Furthermore, we assigned tags to the comets if they were overlapped or located at the boundary of an image (i.e., only a part of the comet is visible). After manual annotation with dots and tags (in the red box), each dotted contour was flled up to give mask images.
DOI: 10.5281/zenodo.6395303
title: Comet assay annotation data for comet segmentation and scoring (1037 comet assay images)

description: Comet assay annotation images used in the following paper

Hong, Y., Han, HJ., Lee, H. et al. Deep learning method for comet segmentation and comet assay image analysis. Sci Rep 10, 18915 (2020). https://doi.org/10.1038/s41598-020-75592-7

DeepComet online service website: https://ad3.io/

sign up->dashboard->APPs->Deep Comets->new job

 

Two biology researchers who were experienced in the comet assay for over half a year under the guidance of a toxicology expert in the assay annotated the images independently and compared each other’s work to ensure consistency. Here, the VGG Image Annotator sofware was used to annotate the images manually. We annotated the intact comet heads without a tail using a circular region tool that outputs the center and radius of the circle. Further, comets with a tail and DNA damage were annotated with a polyline tool, where the frst dot was marked at the center of a comet head, and the second dot was marked at the bottom of the comet head. Tese two points were used to identify the head of a comet. Subsequently, dots were marked along the boundary of the comet tail counterclockwise from the second dot. Te total number of dots were at least eight per each comet.

Comets can be sorted into non-ghost cells with a distinct head and tail, and ghost cells with a small or no nucleoid head and a broad tail. The ghost cells are usually classifed as the highest degree of DNA damage by visual scoring. Until now, there is a controversy over the cause of ghost cells and how they should be analyzed appropriately. Therefore, our method is designed to classify these two kinds of cells, so one can use some custom analysis techniques for ghost cells.

The comets in our datasets were all classifed as non-ghost or ghost cells. Furthermore, we assigned tags to the comets if they were overlapped or located at the boundary of an image (i.e., only a part of the comet is visible). After manual annotation with dots and tags (in the red box), each dotted contour was flled up to give mask images.
DOI: 10.15468/dl.64h297
title: Occurrence Download

description: A dataset containing 396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophiomus setigerus (Vahl, 1797)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 396 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021406-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqyy9f
title: Occurrence Download

description: A dataset containing 2393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Asclepias californica Greene"
 ]
}

 The dataset includes 2393 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021407-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11473718
title: Dataset for "Pan-cancer integrative analyses dissect the remodeling of endothelial cells in human cancers"

description: This is the dataset for "Pan-cancer integrative analyses dissect the remodeling of endothelial cells in human cancers".

 

File "NSR.panE.exprs.all.h5ad.gz" contains processed expression .h5ad data.

File "NSR.panE.obs.meta.csv" contains the meta data for this study.

File "umap.zip" contains the .csv files for umap coordinates.
DOI: 10.5281/zenodo.11473717
title: Dataset for "Pan-cancer integrative analyses dissect the remodeling of endothelial cells in human cancers"

description: This is the dataset for "Pan-cancer integrative analyses dissect the remodeling of endothelial cells in human cancers".

 

File "NSR.panE.exprs.all.h5ad.gz" contains processed expression .h5ad data.

File "NSR.panE.obs.meta.csv" contains the meta data for this study.

File "umap.zip" contains the .csv files for umap coordinates.
DOI: 10.25919/30n4-1f73
title: SYNTHESEAS: Datasets supporting the provisioning Ecosystem Service Value Chain of Wild caught fish, non-edible fish and farmed fish biomass for Wet Tropics, Cape York and Fitzroy NRM regions

description: The SEABORNE (Sustainable UsE And Benefits fOR mariNE) has consolidated and synthesised existing information about who is using the Reef, how it is being used and what the benefits are from this use. This dataset pertains to provisioning ecosystem service - wild fish and non-edible fish and farmed fish biomass and provides values for various fishery types, biomass (kg) and other economic values.
DOI: 10.15468/dl.8rnpx4
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphioctopus fangsiao (d'Orbigny, 1839)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 257 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021408-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfaqb4
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dendrobium thyrsiflorum B.S.Williams",
 "Year 2000-2024"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021409-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hwprkc
title: Occurrence Download

description: A dataset containing 4490 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "TaxonKey is Acer sieboldianum Miq."
 ]
}

 The dataset includes 4490 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021410-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wtkt3
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Diploprora truncata Rolfe ex Downie",
 "Year 2000-2024"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021411-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvhj9q
title: Occurrence Download

description: A dataset containing 7266 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Leiopython albertisii (Peters & Doria, 1878), Morelia viridis (Schlegel, 1872), Xenopeltis hainanensis Hu & Zhao, 1972, Netelia fuscicornis (Holmgren, 1860), Liasis olivaceus Gray, 1842, Antaresia stimsoni (Smith, 1985), Morelia carinata (Smith, 1981), Bothrochilus boa (Schlegel, 1837), Antaresia childreni (Gray, 1842), Antaresia maculosa (Peters, 1873))"
 ]
}

 The dataset includes 7266 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021412-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.132892
title: Ostracon hiératique Ifao - ODM 34_nb_2002_01402

description: Référence : nb_2002_01402<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.132893
title: Ostracon hiératique Ifao - ODM 34_nb_2002_01403

description: Référence : nb_2002_01403<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.15468/dl.p2ggvk
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coeliccia ryukyuensis Asahina, 1951",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210619-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7eyes
title: Occurrence Download

description: A dataset containing 44565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Specimen, Living Specimen, Material citation, Material sample, Human Observation, Machine Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bithynia tentaculata (Linnaeus, 1758)"
 ]
}

 The dataset includes 44565 records from 288 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010783-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.132894
title: Ostracon hiératique Ifao - ODM 34_nb_2002_01404

description: Référence : nb_2002_01404<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.132895
title: Ostracon hiératique Ifao - ODM 35_nb_2002_01380

description: Référence : nb_2002_01380<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.15468/dl.fbsdmc
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Finland",
 "Geometry POLYGON((18.17299 59.26767,33.64837 59.26767,33.64837 65.45485,18.17299 65.45485,18.17299 59.26767))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Agriopis aurantiaria (Hübner)",
 "Year 1970-1979"
 ]
}

 The dataset includes 39 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200116-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.132896
title: Ostracon hiératique Ifao - ODM 35_nb_2002_01381

description: Référence : nb_2002_01381<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.15468/dl.euvra2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taeniophyllum borneense Schltr."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004113-230810091245214/datasets/export for details.
DOI: 10.15468/dl.46rb7n
title: Occurrence Download

description: A dataset containing 34220 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Espeletia Mutis ex Humb. & Bonpl."
 ]
}

 The dataset includes 34220 records from 188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304495-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frbxkr
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "Geometry POLYGON((-3.59802 37.535,-4.26819 37.50014,-4.22424 37.07183,-4.04846 36.80841,-3.33435 36.7292,-2.83997 36.76441,-2.87292 37.49142,-3.59802 37.535))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus pyrenaica Willd."
 ]
}

 The dataset includes 22 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119955-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.132897
title: Ostracon hiératique Ifao - ODM 35_nb_2002_01382

description: Référence : nb_2002_01382<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.132898
title: Ostracon hiératique Ifao - ODM 35_nb_2002_01383

description: Référence : nb_2002_01383<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.15468/dl.ehf7zq
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spermacoce thymifolia (Griseb.) Kuntze"
 ]
}

 The dataset includes 34 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138975-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2a66x4
title: Occurrence Download

description: A dataset containing 1611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Microtus gerbei (Gerbe, 1879)"
 ]
}

 The dataset includes 1611 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027954-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qukkq
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crossodactylus caramaschii Bastos & Pombal, 1995"
 ]
}

 The dataset includes 152 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304509-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rz9cdp
title: Occurrence Download

description: A dataset listing the 383 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-100.96794 22.11784,-100.9521 22.07151,-100.92955 22.03555,-100.92037 22.01011,-100.86644 22.02851,-100.91143 22.13188,-100.96794 22.11784))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 383 records were derived from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010817-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9f67y
title: Occurrence Download

description: A dataset containing 366 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agalychnis annae (Duellman, 1963)"
 ]
}

 The dataset includes 366 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304486-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.132899
title: Ostracon hiératique Ifao - ODM 35_nb_2002_01384

description: Référence : nb_2002_01384<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.15468/dl.0ytngr
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Vigna triphylla (R.Wilczek) Verdc.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 45 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009518-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.132900
title: Ostracon hiératique Ifao - ODM 35_nb_2002_01385

description: Référence : nb_2002_01385<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.15468/dl.387vqt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bactrocera melanotus (Coquillett, 1909)",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0368427-210914110416597/datasets/export for details.
DOI: 10.34816/ifao.archives.132901
title: Ostracon hiératique Ifao - ODM 35_nb_2002_01386

description: Référence : nb_2002_01386<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.15468/dl.8ne356
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tephrosia leucantha Kunth"
 ]
}

 The dataset includes 123 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010808-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ek6tas
title: Occurrence Download

description: A dataset containing 170549 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is KUBI Mammalogy Collection"
 ]
}

 The dataset includes 170549 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200114-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.132902
title: Ostracon hiératique Ifao - ODM 35_nb_2002_01387

description: Référence : nb_2002_01387<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.15468/dl.sm2632
title: Occurrence Download

description: A dataset containing 7698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phyllostomidae"
 ]
}

 The dataset includes 7698 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200117-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7jg35
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lagurus lagurus (Pallas, 1773)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027921-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.132903
title: Ostracon hiératique Ifao - ODM 35_nb_2002_01388

description: Référence : nb_2002_01388<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.15468/dl.fjcksm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taeniophyllum carnosiflorum Schltr."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004132-230810091245214/datasets/export for details.
DOI: 10.34816/ifao.archives.132904
title: Ostracon hiératique Ifao - ODM 36_nb_2002_01366

description: Référence : nb_2002_01366<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />
DOI: 10.15468/dl.h9kcsm
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyperolius discodactylus Ahl, 1931"
 ]
}

 The dataset includes 189 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304503-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4p9w5s
title: Occurrence Download

description: A dataset containing 2986 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arvicola sapidus Miller, 1908"
 ]
}

 The dataset includes 2986 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027923-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.132905
title: Ostracon hiératique Ifao - ODM 36_nb_2002_01367

description: Référence : nb_2002_01367<br />Site : Deir el-Médina<br />Secteur : Village<br />Type : photographie<br />