cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3605504_d1.v1
title: Additional file 2: Table S3. of Exploring tomato Solanum pennellii introgression lines for residual biomass and enzymatic digestibility traits

description: ANOVA analysis on phenotypic and chemical traits. Table S4. Protein families involved in the construction and modification processes of cell wall polysaccharides. Table S5. Tomato cell wall related proteins retrieved in S. pennelli genome region of selected introgression lines. Table S6. List of primers used in qPCR assay. (XLSX 55Â kb)
DOI: 10.5284/1125052
title: Data from a Woodland Trial Trenching Evaluation at Jones Hill Wood, Buckinghamshire, 2021 (HS2 Phase One)

description: This collection comprises of reports, spreadsheets, GIS data and site records from a woodland trial trench evaluation carried out by INFRA Archaeology at Jones Hill Wood, Buckinghamshire in June 2021.
DOI: 10.6084/m9.figshare.c.3605501_d6.v1
title: MOESM2 of Defining rules of CD8+ T cell expansion against pre-erythrocytic Plasmodium antigens in sporozoite-immunized mice

description: Additional file 2. Title: Proteins subjected to bioinformatics analysis and listing of all syntenic orthologue pairs. This file provides multiple worksheets listing species-by-species protein identifiers (PlasmoDB gene ID) as well as worksheets listing the syntenic orthologue pairs for P. yoelii 17XNL/P. berghei ANKA and P. falciparum 3D7/P. vivax Sal1. These pairings were used as input pairings for Additional files 3 and 4.
DOI: 10.6084/m9.figshare.c.3605534_d1.v1
title: Additional file 1: Table S1. of Identification of TTAGGG-binding proteins in Neurospora crassa, a fungus with vertebrate-like telomere repeats

description: MaxQuant output table containing protein identification and LFQ quantification data for the neurospora telomere pull-downs. Table S2. Sequence of the cloned coding sequences from N. crassa by cDNA synthesis of its mRNA. Table S3. Primers used in this study. (XLSX 126 kb)
DOI: 10.6084/m9.figshare.c.3605525_d4.v1
title: Additional file 8: of Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana

description: Detailed list of DNase I SIM changes. Side-by-side spreadsheet of differences at each step found between DNase I SIM and the DNase-seq protocols in [6] and [10].
DOI: 10.6084/m9.figshare.c.3605567_d2.v1
title: MOESM2 of Collapse of an iconic conifer: long-term changes in the demography of Widdringtonia cedarbergensis using repeat photography

description: Additional file 2: Table S2. Source, spatial and temporal resolution, and unit of measurement of environmental variables.
DOI: 10.6084/m9.figshare.c.3605570_d2.v1
title: Additional file 2: of Supervising international students in clinical placements: perceptions of experiences and factors influencing competency development

description: Thematic analysis dataset. (XLSX 130Â kb)
DOI: 10.6084/m9.figshare.c.3605597_d2.v1
title: Additional file 9: of RNA-seq analyses of changes in the Anopheles gambiae transcriptome associated with resistance to pyrethroids in Kenya: identification of candidate-resistance genes and candidate-resistance SNPs

description: SNP-genes. List of genes with SNPs identified only in resistant mosquitoes from RNA-seq data and Odd ratio analyses for the genes that were genotyped in single mosquitoe. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3605603_d1.v1
title: Additional file 1: of Testing the price and affordability of healthy and current (unhealthy) diets and the potential impacts of policy change in Australia

description: Detailed calculation of diet basket contents and price. (XLSX 485 kb)
DOI: 10.6084/m9.figshare.c.3605597_d3.v1
title: Additional file 6: of RNA-seq analyses of changes in the Anopheles gambiae transcriptome associated with resistance to pyrethroids in Kenya: identification of candidate-resistance genes and candidate-resistance SNPs

description: Candidate-resistance genes. List of candidate resistance genes detected in An. gambiae mosquitoes from West and East Africa. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3605612_d1.v1
title: Additional file 1 of Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes

description: Supplementary Figures. Supplementary Figure 1 (a to h). Chromosomal TE density. Main transposable element order density in 50 kb non-overlapping windows. Only mapped and oriented scaffolds are present, N90 scaffolds for D. buzzatii st-1 (a to d), and N80 scaffolds for D. mojavensis (e to h). Changes in dot colors denote scaffold changes. Supplementary Figure 2. D. buzzatii j-19 Order correction. Order contribution (kb) to D. buzzatii j-19 genome before (blue) and after (red) the coverage-based correction. Supplementary Figure 3. D. buzzatii j-19 Superfamily correction. Superfamily contribution (kb) to D. buzzatii j-19 genome before (blue) and after (red) the coverage-based correction. (ZIP 792 kb)
DOI: 10.6084/m9.figshare.c.3605624_d1.v1
title: Additional file 3: of Chemotherapy and radiation therapy elicits tumor specific T cell responses in a breast cancer patient

description: TCR raw data sequence from PBMCs obtained before and after therapy and TILs obtained from FFPE tumor. (XLSX 27054 kb)
DOI: 10.6084/m9.figshare.c.3605597_d5.v1
title: Additional file 3: of RNA-seq analyses of changes in the Anopheles gambiae transcriptome associated with resistance to pyrethroids in Kenya: identification of candidate-resistance genes and candidate-resistance SNPs

description: Output of the Tuxedo pipeline on gene differential expression. List of genes analyzed, gene quantification levels (output of Cufflinks) and analyses of differential expression (output of Cuffdiff). (XLSX 6499 kb)
DOI: 10.6084/m9.figshare.c.3605597_d7.v1
title: Additional file 1: of RNA-seq analyses of changes in the Anopheles gambiae transcriptome associated with resistance to pyrethroids in Kenya: identification of candidate-resistance genes and candidate-resistance SNPs

description: List of primers. List of genes/primers used in qRT-PCR (A) and in genotyping (B). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3605663_d3.v1
title: Additional file 3: Table S3. of Genetic diversity of Plasmodium falciparum isolates from uncomplicated malaria cases in Ghana over a decade

description: Allele sizes and number of genotypes per infection for isolates collected in 2003â  2004. (XLS 87Â kb)
DOI: 10.6084/m9.figshare.c.3605702_d3.v1
title: MOESM1 of Derivation of induced pluripotent stem cells from orangutan skin fibroblasts

description: Additional file 1. Log-transformed gene expression scores from orangutan fibroblasts and iPSCs. A complete list of log-transformed gene expression scores from orangutan fibroblasts and iPSCs is provided along with their percentile rank within a given samples. Differentially expressed genes (1.5-fold change FDR&lt;0.05) are also provided.
DOI: 10.6084/m9.figshare.c.3605711_d2.v1
title: Additional file 3: Table S3. of The rumen microbial metagenome associated with high methane production in cattle

description: KEGG dataset in order of average gene abundance. (XLSX 1400 kb)
DOI: 10.15468/dl.crtx3p
title: Occurrence Download

description: A dataset containing 88759 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2015-2015"
 ]
}

 The dataset includes 88759 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037529-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3605744_d1.v1
title: Additional file 3: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

description: List of DEGs in PBMCs of pigs at 6 hpv of PRRSV vaccination in pigs compared to control. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3605744_d2.v1
title: Additional file 5: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

description: List of DEGs in PBMCs of pigs at 72 hpv of PRRSV vaccination in pigs compared to control. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3605744_d3.v1
title: Additional file 6: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

description: Degree and betweenness centrality measures of the seed genes of the network. (CSV 7 kb)
DOI: 10.6084/m9.figshare.c.3605726_d5.v1
title: Additional file 5: Table S6. of Integration of molecular cytogenetics, dated molecular phylogeny, and model-based predictions to understand the extreme chromosome reorganization in the Neotropical genus Tonatia (Chiroptera: Phyllostomidae)

description: Long term effective population size (Ne) estimations using Lande (1979) model and the calculated rates of chromosomal rearrangement for TSA and ACU. (XLSX 140 kb)
DOI: 10.5281/zenodo.14505424
title: Medieval manuscript fragments as binding waste

description: This file contains information on fragments of medieval manuscripts in Latin (and a few in Hebrew) found as binding waste in other manuscripts or early printed books. It includes references to online images, the identification of the texts when available, and a tentative date. The information can be used for further research with reference to its original source. The correctness of the data and the stability of the included links cannot be guaranteed by the author.
DOI: 10.5281/zenodo.14505425
title: Medieval manuscript fragments as binding waste

description: This file contains information on fragments of medieval manuscripts in Latin (and a few in Hebrew) found as binding waste in other manuscripts or early printed books. It includes references to online images, the identification of the texts when available, and a tentative date. The information can be used for further research with reference to its original source. The correctness of the data and the stability of the included links cannot be guaranteed by the author.
DOI: 10.6084/m9.figshare.c.3605753_d1.v1
title: Additional file 2: of Herbal remedies and functional foods used by cancer patients attending specialty oncology clinics in Trinidad

description: SPSS data file. (SAV 83Â kb)
DOI: 10.6084/m9.figshare.c.3605744_d5.v1
title: Additional file 4: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

description: List of DEGs in PBMCs of pigs at 24 hpv of PRRSV vaccination in pigs compared to control. (XLSX 226 kb)
DOI: 10.6084/m9.figshare.c.3605759_d2.v1
title: Additional file 6: Table S5. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Summary of Ingenuity IPA-based pathway analyses. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3605759_d11.v1
title: Additional file 8: Table S6. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Summary of IPAD-based pathway and disease enrichment analyses. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3605759_d12.v1
title: Additional file 1: Table S1. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Meta data for RNA-seq and RT-qPCR assays. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3605759_d13.v1
title: Additional file 12: Table S10. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: GO-BP terms enriched in the WGCNA modules. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3605810_d1.v1
title: MOESM2 of Plasma preparation to measure FDA-approved protein markers by selected reaction monitoring

description: Additional file 2: Table S1. The summary of all obtained SRM spectra with q-values â ¤ 0.01.
DOI: 10.6084/m9.figshare.c.3605831_d1.v1
title: Additional file 1: of High-risk HPV is not associated with epithelial ovarian cancer in a Caucasian population

description: Dataset containing information on individual samples and PCR reactions. (XLSM 26Â kb)
DOI: 10.5281/zenodo.13771441
title: Dataset: Data of microstructural and magnetic characterization of HPT-deformed Fe-Cu

description: This dataset contains the raw data of the microstructural and magnetic characterization of Fe and Fe-Cu samples with a Cu-content ranging from 5 at.% to 30 at.% processed by HPT-deformation. 

The dataset contains data from:



Hardness measurements of all samples

SQUID measurements of all samples

Magnetostriction measurements of all samples

EDS measurements of all Fe-Cu samples

Synchrotron X-ray diffraction measurements of selected Fe-Cu samples
DOI: 10.5281/zenodo.13771442
title: Dataset: Data of microstructural and magnetic characterization of HPT-deformed Fe-Cu

description: This dataset contains the raw data of the microstructural and magnetic characterization of Fe and Fe-Cu samples with a Cu-content ranging from 5 at.% to 30 at.% processed by HPT-deformation. 

The dataset contains data from:



Hardness measurements of all samples

SQUID measurements of all samples

Magnetostriction measurements of all samples

EDS measurements of all Fe-Cu samples

Synchrotron X-ray diffraction measurements of selected Fe-Cu samples
DOI: 10.6084/m9.figshare.c.3605834_d1.v1
title: Additional file 2: of Genome wide characterization of simple sequence repeats in watermelon genome and their application in comparative mapping and genetic diversity analysis

description: Table S1. Watermelon Plant introduction accessions (PIs) used in the present study. Table S2. Genome wide SSR primers developed in the watermelon genome. Table S3. List of cross-species SSR markers between watermelon and cucumber identified by in silico PCR. Table S4. List of cross-species SSR markers between watermelon and melon identified by in silico PCR. Table S5. List of conserved SSR markers among watermelon, melon and cucumber genomes. Table S6. Syntenic blocks shared for cucumber, melon and watermelon genomes. Table S7. Information of fosmid clones used in fluorescence in situ hybridization (FISH). Table S8. List of 192 SSR primers used for polymorphism screening in watermelon. Table S9. Statistic of observed (Na) and effective number of alleles (Ne), observed (Ho) and expected heterozygosity (He), polymorphic information content (PIC) and Shannonâ  s information index (I) for 32 SSR markers. (XLSX 3673Â kb)
DOI: 10.23668/psycharchives.3088
title: Dataset for: OSIEshort: A small stimulus set can reliably estimate individual differences in semantic salience

description: Dataset for: De Haas, B. (2019, June 4). Can a small stimulus set reliably estimate individual differences in semantic salience? Leibniz Institut für Psychologische Information und Dokumentation (ZPID). https://doi.org/10.23668/psycharchives.2454
description: Corresponding article: Linka, M., & de Haas, B. (2020). OSIEshort: A small stimulus set can reliably estimate individual differences in semantic salience. Journal of Vision, 20(9), 13–13. https://doi.org/10.1167/jov.20.9.13
description: LabeledFix_trier.mat: mat file for eye gaze data collected on both days; LongFormatLabeledFixDay1.csv: csv. file including gaze data collected on day 1; LongFormatLabeledFixDay2.csv: csv. file including gaze data collected on day 2
DOI: 10.6084/m9.figshare.c.3605978_d4.v1
title: Additional file 10: Table S5. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

description: GO enrichment analysis of all strains vs full transcriptome. The file consists separate sheets of up and down regulated GO enrichment terms of each resistant strain (GR4-AP, GR4-AS, GR9-IS) vs susceptible strain S-GR6 and of GR4-AS vs GR4-AP against full transcriptome. (XLS 621 kb)
DOI: 10.6084/m9.figshare.c.3605990_d1.v1
title: Additional file 5: Table S4. of Novel equine tissue miRNAs and breed-related miRNA expressed in serum

description: Differentially expressed miRNAs in pony serum compare to Warmbloods. An Excel table with log 2 fold changes and false discovery rates of genes significantly differentially expressed in serum derived from 4 Shetland and one Welsh pony in comparison to 44 Warmbloods. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3605996_d1.v1
title: Additional file 3: of The neurotranscriptome of the Aedes aegypti mosquito

description: Is an annotation table for all genes in AaegL.RU, including OrthoDB orthologue groups shared with D. melanogaster. (XLSX 841 kb)
DOI: 10.6084/m9.figshare.c.3605990_d2.v1
title: Additional file 3: Table S2. of Novel equine tissue miRNAs and breed-related miRNA expressed in serum

description: Known and novel miRNAs expression values. An Excel table with normalized count per million values (cpm) for each of the known and novel miRNAs expressed at &gt; 1 cpm in 90 % of samples. (XLSX 519 kb)
DOI: 10.6084/m9.figshare.c.3605996_d2.v1
title: Additional file 8: of The neurotranscriptome of the Aedes aegypti mosquito

description: Is a spreadsheet describing the DESeq2 differential expression statistics of sexually dimorphic transcripts for all applicable tissues. (XLSX 1366 kb)
DOI: 10.6084/m9.figshare.c.3605993_d3.v1
title: Additional file 5: Table S12. of A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions

description: Lists of sequences in the validation datasets. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3605996_d3.v1
title: Additional file 6: of The neurotranscriptome of the Aedes aegypti mosquito

description: Is a table of transcript abundance (in units of TPM) for all non-blood-fed and male tissues, AaegL3.3 annotation. (XLSX 21243 kb)
DOI: 10.6084/m9.figshare.c.3605990_d4.v1
title: Additional file 1: Table S1. of Novel equine tissue miRNAs and breed-related miRNA expressed in serum

description: RNA sample description. An Excel table with details on RNA samples used for library preparation. For each library horse ID, tissue, breed, age, sex, and absorbance at 414Â nm (only serum samples) are given. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3605990_d5.v1
title: Additional file 4: Table S3. of Novel equine tissue miRNAs and breed-related miRNA expressed in serum

description: Novel miRNA characteristics. An Excel table with novel miRNAs identified in this study. Mature miRNA sequences, genomic coordinates of the hairpins, strand and miRDeep2 score are given. (XLSX 85 kb)
DOI: 10.6084/m9.figshare.c.3605966_d11.v1
title: Additional file 10: of Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs)

description: Comparison of reagent concentrations described in 1Â L of medium. Table comparing reagent concentrations described for media used for cultivation of complex fecal communities from 11 different sources.
DOI: 10.6084/m9.figshare.c.3606005_d2.v1
title: Additional file 1: Table S1. of Investigation of proteome changes in osteoclastogenesis in low serum culture system using quantitative proteomics

description: Detailed Information of the Differentially Expressed Proteins. (XLSX 106 kb)
DOI: 10.6084/m9.figshare.c.3605993_d12.v1
title: Additional file 10: Table S11. of A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions

description: List of known PTMs predicted to be located inside/outside PPIRs by using our predictive models. (XLSX 9201 kb)
DOI: 10.6084/m9.figshare.c.3606011_d2.v1
title: Additional file 2 of solveME: fast and reliable solution of nonlinear ME models

description: Tables S1â  S2.(XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3606032_d1.v1
title: Additional file 7: Table S5. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Homeobox and other TF groups that are highly DE. (XLSX 790Â kb)
DOI: 10.6084/m9.figshare.c.3606032_d10.v1
title: Additional file 14: Table S10. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: A list of the primers that were used for qRT-PCR experiments. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3606044_d4.v1
title: MOESM3 of Penicillin binding protein 3 of Staphylococcus aureus NCTC 8325-4 binds and activates human plasminogen

description: Additional file 3. Primary data of Plg binding by recombinant proteins (Fig. 4).
DOI: 10.6084/m9.figshare.c.3606032_d11.v1
title: Additional file 1: Table S1. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: The differentially expressed (DE) genes of the regeneration screen. The list contains the gene id, followed by Uniprot or Blast2GO annotation and FDR adjusted p-value of the time effect. This is followed by the average reads for each time point, DESeq normalized read count per each duplicate time point and raw read count per each duplicate time point. The annotation (â  â  ) appears when Blast2GO did not retrieve any blast hit in the RefSeq protein database. (XLSX 2933Â kb)
DOI: 10.6084/m9.figshare.c.3606050_d3.v1
title: Additional file 6: of The intron-enriched HERV-K(HML-10) family suppresses apoptosis, an indicator of malignant transformation

description: Sequences of ASOs. Asterisks denote phosphorothioate bonds. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3606032_d12.v1
title: Additional file 12: Table S8. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Time course graphs of the major DE tubulin and cilia associated genes. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3606050_d4.v1
title: Additional file 4: of The intron-enriched HERV-K(HML-10) family suppresses apoptosis, an indicator of malignant transformation

description: Protein fasta sequences of Pol proteins of different endogenous and exogenous betaretroviruses. (TXT 11 kb)
DOI: 10.6084/m9.figshare.c.3606032_d13.v1
title: Additional file 8: Table S6. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Wnt family genes clusters. A list of the cluster groups of the Wnt family genes and a list of the genes in each cluster shown in Fig.Â 5a. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3606032_d14.v1
title: Additional file 9: Figure S4. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Time course graphs of the major DE Wnt factors and Wnt pathway members. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.c.3606050_d5.v1
title: Additional file 5: of The intron-enriched HERV-K(HML-10) family suppresses apoptosis, an indicator of malignant transformation

description: Primer sequences. (XLS 42 kb)
DOI: 10.6084/m9.figshare.c.3606110_d3.v1
title: Additional file 3 of 
                     Plasmodium falciparum and soil-transmitted helminth co-infections among children in sub-Saharan Africa: a systematic review and meta-analysis

description: Figure S1. Funnel plot. Odds ratio against standard error of odds ratio for seven studies, which compared the prevalence of asymptomatic/uncomplicated P. falciparum infection between children who were infected with STH and not infected with intestinal helminth in SSA. Figure S2. Funnel plot. Odds ratio against standard error of odds ratio for three studies, which compared the prevalence of anaemia between children who were co-infected with STH and asymptomatic/uncomplicated P. falciparum and those infected with only P. falciparum in SSA. (ZIP 35 kb)