cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8940260.v1
title: A limnological assessment of the diverse waterscape in the Cordillera Vilcanota, Peruvian Andes

description: The Cordillera Vilcanota in the Cusco region of Peru is experiencing dramatic environmental changes due to recent warming. An understudied component of this mountain range is the diverse waterscape, which serves as a vital water source to cities and communities downstream and is critical to supporting the region’s rich biodiversity. A survey of 19 sites comprising lakes, ponds, proglacial systems, and a glacial meltwater stream produced 3 main findings. First, the study sites recorded large gradients in key limnological variables including pH, specific conductivity, nutrients, and dissolved organic carbon within a relatively small area (&lt;800 km<sup>2</sup>). Second, concentrations of some metals were unexpectedly high, exceeding guidelines for the protection of aquatic life in about one-third of the study sites. Third, temperature data recorded over 1 year showed that the lakes were generally isothermal with only short periods of weak thermal stratification. Most of the limnological variability was linked to the size of the waterbody (i.e., lake or pond) and whether or not the site is connected to a glacial watershed. These baseline data are critical to assessing the limnological response to ongoing climate changes and future stressors such as mining operations and the ever-increasing demand for water.
DOI: 10.6084/m9.figshare.8940218
title: CCDB_8140.jpg

description: Single computed slice through a tomographic volume of mitochondria at the Node of Ranvier in rat peripheral nerve root
DOI: 10.6084/m9.figshare.8940218.v1
title: CCDB_8140.jpg

description: Single computed slice through a tomographic volume of mitochondria at the Node of Ranvier in rat peripheral nerve root
DOI: 10.6084/m9.figshare.8940041
title: grid.214572.7

description: Network Graphs for institution grid.214572.7 created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8940041.v1
title: grid.214572.7

description: Network Graphs for institution grid.214572.7 created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8940023
title: ALL.ERV.GMAP.sorted.bam

description: bam file<br><br>
DOI: 10.6084/m9.figshare.8940023.v1
title: ALL.ERV.GMAP.sorted.bam

description: bam file<br><br>
DOI: 10.6084/m9.figshare.8939678
title: Elusimicrobia analysis

description: fasta sequences used to make the phylogenetic trees in the paper. Phyligenetic files (newick format) are also provided. Itol annotation files are also provided
DOI: 10.6084/m9.figshare.8939567
title: Supplementary Tables 1-4

description: Supplementary Tables 1-4
DOI: 10.6084/m9.figshare.8939567.v1
title: Supplementary Tables 1-4

description: Supplementary Tables 1-4
DOI: 10.6084/m9.figshare.8939678.v1
title: Elusimicrobia analysis

description: fasta sequences used to make the phylogenetic trees in the paper. Phyligenetic files (newick format) are also provided. Itol annotation files are also provided
DOI: 10.6084/m9.figshare.8938268
title: grid.5342.0

description: Network Graphs for institution grid.5342.0 created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8938247
title: R Code to generate reporting delay adjusted epidemiological incidence curves

description: An example data set from the 2018-19 Ebola outbreak has been provided along with the code. The data set includes the dates of symptom onset, dates of reporting and the unadjusted case incidence. The code includes the main R code file along with the supporting functions of the main file.Dates of symptom onset and reporting need to be converted into a number format and line listed in two columns stored in a txt. file.
DOI: 10.6084/m9.figshare.8938238
title: Gene expression results

description: This file contains Results of gene expression analysis for genes listed on headings.The code numbers represent each sample. Group A - patients before treatment; group B - patients after start of immunotherapy; group C - healthy controls. Note that code numbers A and B correspond to each other and mean the same person.Gene expression is presented by Relative Quantification, calculated according to MICE guidelines.
DOI: 10.6084/m9.figshare.8938238.v1
title: Gene expression results

description: This file contains Results of gene expression analysis for genes listed on headings.The code numbers represent each sample. Group A - patients before treatment; group B - patients after start of immunotherapy; group C - healthy controls. Note that code numbers A and B correspond to each other and mean the same person.Gene expression is presented by Relative Quantification, calculated according to MICE guidelines.
DOI: 10.6084/m9.figshare.8938247.v1
title: R Code to generate reporting delay adjusted epidemiological incidence curves

description: An example data set from the 2018-19 Ebola outbreak has been provided along with the code. The data set includes the dates of symptom onset, dates of reporting and the unadjusted case incidence. The code includes the main R code file along with the supporting functions of the main file.Dates of symptom onset and reporting need to be converted into a number format and line listed in two columns stored in a txt. file.
DOI: 10.6084/m9.figshare.8938247.v3
title: R Code to generate reporting delay adjusted epidemiological incidence curves

description: An example data set from the 2018-19 Ebola outbreak has been provided along with the code. The data set includes the dates of symptom onset, dates of reporting and the unadjusted case incidence. The code includes the main R code file along with the supporting functions of the main file.Dates of symptom onset and reporting need to be converted into a number format and line listed in two columns stored in a txt. file.
DOI: 10.6084/m9.figshare.8938202
title: Patient characteristics.xlsx

description: The file contains characteristics os studied group. A group of 22 patients with comorbidities and results of Symptom Medication Score - Allergy Control Score (ACS). SMS A - assessment before treatment. SMS B - assessment 1 year of after treatment. For binary values 1 means "yes" 0 means "no".
DOI: 10.6084/m9.figshare.8938247.v2
title: R Code to generate reporting delay adjusted epidemiological incidence curves

description: An example data set from the 2018-19 Ebola outbreak has been provided along with the code. The data set includes the dates of symptom onset, dates of reporting and the unadjusted case incidence. The code includes the main R code file along with the supporting functions of the main file.Dates of symptom onset and reporting need to be converted into a number format and line listed in two columns stored in a txt. file.
DOI: 10.6084/m9.figshare.8938178
title: اثر شوری بر کلسیم برگ زعفران.pdf

description: اثر شوری بر کلسیم برگ زعفران
DOI: 10.6084/m9.figshare.8938091
title: RPPA quantification from PMCC

description: RPPA quantification from PMCC<br>
DOI: 10.6084/m9.figshare.8938178.v1
title: اثر شوری بر کلسیم برگ زعفران.pdf

description: اثر شوری بر کلسیم برگ زعفران
DOI: 10.6084/m9.figshare.8938052
title: Creative writing and drawing activity performed by 4th grade primary-school students

description: Data gathered from the implementation of a creative writing and drawing activity performed by 4<sup>th</sup> grade primary-school students: 25 written productions and 25 graphic productions.
DOI: 10.6084/m9.figshare.8938091.v1
title: RPPA quantification from PMCC

description: RPPA quantification from PMCC<br>
DOI: 10.6084/m9.figshare.8938007
title: Small mammal controls on the climate‐driven range shift of woody plant species

description: Data and scripts for analyses described in: Mortelliti A., Grentzmann I., Fraver S., Brehm A., Calkins S., Fisichelli N. Small mammal controls on the climate-driven range shift of woody plant species. Oikos, in press. DOI: 10.1111/oik.06643<br>
DOI: 10.6084/m9.figshare.8937992
title: Molecular Evolution of the Glutathione S-transferase family in the Bemisia tabaci species complex - Supplementary Alignments

description: Alignments used for the positive selection tests performed in the work "Molecular Evolution of the Glutathione S-transferase family in the <i>Bemisia tabaci</i> species complex ".<br>Abstract:The glutathione S-transferase (GST) family plays an important role in the adaptation of herbivorous insects to new host plants and other environmental constrains. The family codes for enzymes that neutralize reactive oxygen species and phytotoxins through the conjugation of reduced glutathione. Here, we studied the molecular evolution of the GST family in <em>Bemisia tabaci</em>, a complex of &gt;35 sibling species, differing in their geographic and host ranges. We tested if some enzymes evolved different functionality, by comparing their sequences in six species, representing five of the six major genetic clades in the complex. Comparisons of the nonsynonymous to synonymous substitution ratios detected positive selection events in 11 codons of 5 cytosolic GSTs. Ten of them are located in the periphery of the GST dimer, suggesting a putative involvement in interactions with other proteins. Modeling the tertiary structure of orthologous enzymes, identified additional 19 mutations in 9 GSTs, likely affecting the enzymes’ functionality. Most of the mutation events were found in the environmentally responsive classes Delta and Sigma, indicating a slightly different delta/sigma tool box in each species. At a broader genomic perspective, our analyses indicated a significant expansion of the Delta GST class in <em>B. tabaci</em> and a general association between the diet breadth of hemipteran species and their total number of GST genes. We raise the possibility that at least some of the identified changes improve the fitness of the <em>B. tabaci</em> species carrying them, leading to their better adaptation to specific environments.<br>
DOI: 10.6084/m9.figshare.8937995
title: Data repository Chronic bicarbonate supplementation at altitude

description: Experimental study on chronic bicarbonate supplementation at hypobaric hypoxia.
DOI: 10.6084/m9.figshare.8938007.v1
title: Small mammal controls on the climate‐driven range shift of woody plant species

description: Data and scripts for analyses described in: Mortelliti A., Grentzmann I., Fraver S., Brehm A., Calkins S., Fisichelli N. Small mammal controls on the climate-driven range shift of woody plant species. Oikos, in press. DOI: 10.1111/oik.06643<br>
DOI: 10.6084/m9.figshare.8937839
title: The difference in impression between genuine and artificial leather: Quantifying its feeling of authenticity

description: <pre>These data sets are for the physical features and subjective assessment scores used for quantification.</pre>
DOI: 10.17028/rd.lboro.8937815
title: Supplementary Information Files for "A GIS-Based Method for Identification of Wide Area Rooftop Suitability for Minimum Size PV Systems Using LiDAR Data and Photogrammetry"

description: Supplementary Information Files for "A GIS-Based Method for Identification of Wide Area Rooftop Suitability for Minimum Size PV Systems Using LiDAR Data and Photogrammetry"<br>Abstract:Knowledge of roof geometry and physical features is essential for evaluation of the impact of multiple rooftop solar photovoltaic (PV) system installations on local electricity networks. The paper starts by listing current methods used and stating their strengths and weaknesses. No current method is capable of delivering accurate results with publicly available input data. Hence a different approach is developed, based on slope and aspect using aircraft-based Light Detection and Ranging (LiDAR) data, building footprint data, GIS (Geographical Information Systems) tools, and aerial photographs. It assesses each roof’s suitability for PV deployment. That is, the characteristics of each roof are examined for fitting of at least a minimum size solar power system. In this way the minimum potential solar yield for region or city may be obtained. Accuracy is determined by ground-truthing against a database of 886 household systems. This is the largest validation of a rooftop assessment method to date. The method is flexible with few prior assumptions. It can generate data for various PV scenarios and future analyses.<br>
DOI: 10.17028/rd.lboro.8937815.v1
title: Supplementary Information Files for "A GIS-Based Method for Identification of Wide Area Rooftop Suitability for Minimum Size PV Systems Using LiDAR Data and Photogrammetry"

description: Supplementary Information Files for "A GIS-Based Method for Identification of Wide Area Rooftop Suitability for Minimum Size PV Systems Using LiDAR Data and Photogrammetry"<br>Abstract:Knowledge of roof geometry and physical features is essential for evaluation of the impact of multiple rooftop solar photovoltaic (PV) system installations on local electricity networks. The paper starts by listing current methods used and stating their strengths and weaknesses. No current method is capable of delivering accurate results with publicly available input data. Hence a different approach is developed, based on slope and aspect using aircraft-based Light Detection and Ranging (LiDAR) data, building footprint data, GIS (Geographical Information Systems) tools, and aerial photographs. It assesses each roof’s suitability for PV deployment. That is, the characteristics of each roof are examined for fitting of at least a minimum size solar power system. In this way the minimum potential solar yield for region or city may be obtained. Accuracy is determined by ground-truthing against a database of 886 household systems. This is the largest validation of a rooftop assessment method to date. The method is flexible with few prior assumptions. It can generate data for various PV scenarios and future analyses.<br>
DOI: 10.6084/m9.figshare.8937686
title: SUPPLEMENTAL MATERIAL – THE CALCIUM TO PHOSPHOROUS (Ca/P) RATIO IN THE DIAGNOSIS OF PRIMARY HYPERPARATHYROIDISM AND HYPOPARATHYROIDISM: A MULTICENTRIC, CROSS-SECTIONAL, RETROSPECTIVE STUDY

description: Supplemental dataSupplemental material including:1) Supplemental Table 12) Supplemental Figure 1Supplemental data including:1) Supplemental Table 12) Supplemental Figure 1
DOI: 10.6084/m9.figshare.8936720
title: The Harvard Brain Tissue Resource Center study data sets

description: These data include genotypes and covariates part of the data generated from 463 prefrontal cortex brain samples (310 Late Onset Alzheimer's Disease patients, 153 control) in the frames of Harvard Brain Tissue Research Center study. The data from the HBTRC set (previously accessible via https://synapse.sagebase.org/#Synapse:syn4505) is being made available through the AMP-AD Knowledge Portal at https://www.synapse.org/#!Synapse:syn3159435. <br>This is a copy of the originally available data set. Data set was used to produce HBTRC epistasis data set https://doi.org/10.6084/m9.figshare.5234689 that is a part of the integrated data collection HENA https://doi.org/10.6084/m9.figshare.c.4469240
DOI: 10.6084/m9.figshare.8936720.v1
title: The Harvard Brain Tissue Resource Center study data sets

description: These data include genotypes and covariates part of the data generated from 463 prefrontal cortex brain samples (310 Late Onset Alzheimer's Disease patients, 153 control) in the frames of Harvard Brain Tissue Research Center study. The data from the HBTRC set (previously accessible via https://synapse.sagebase.org/#Synapse:syn4505) is being made available through the AMP-AD Knowledge Portal at https://www.synapse.org/#!Synapse:syn3159435. <br>This is a copy of the originally available data set. Data set was used to produce HBTRC epistasis data set https://doi.org/10.6084/m9.figshare.5234689 that is a part of the integrated data collection HENA https://doi.org/10.6084/m9.figshare.c.4469240
DOI: 10.17028/rd.lboro.8928407
title: Supplementary Information Files for "The Global Legal Entity Identifier System: How Can It Deliver?"

description: Supplementary Information Files for "The Global Legal Entity Identifier System: How Can It Deliver?"<br>Abstract:We examine the global legal entity identifier (LEI) system for the identification of participants in financial markets. Semi-structured interviews with data professionals revealed the many ways in which the LEI can improve both business process efficiency, and counterparty and credit risk management. Larger social benefits, including the monitoring of systemic financial risk, are achievable if it becomes the accepted universal standard for legal entity identification. Our interviews also review the substantial co-ordination and investment barriers to LEI adoption. To address these, a clear regulatory-led road map is needed for its future development, with widespread application in regulatory reporting.<br>
DOI: 10.6084/m9.figshare.8926079
title: grid.461819.3

description: Network Graphs for institution grid.461819.3 created for "What Does a University Look Like?" poster
DOI: 10.17028/rd.lboro.8928407.v1
title: Supplementary Information Files for "The Global Legal Entity Identifier System: How Can It Deliver?"

description: Supplementary Information Files for "The Global Legal Entity Identifier System: How Can It Deliver?"<br>Abstract:We examine the global legal entity identifier (LEI) system for the identification of participants in financial markets. Semi-structured interviews with data professionals revealed the many ways in which the LEI can improve both business process efficiency, and counterparty and credit risk management. Larger social benefits, including the monitoring of systemic financial risk, are achievable if it becomes the accepted universal standard for legal entity identification. Our interviews also review the substantial co-ordination and investment barriers to LEI adoption. To address these, a clear regulatory-led road map is needed for its future development, with widespread application in regulatory reporting.<br>
DOI: 10.6084/m9.figshare.8926013
title: grid.5590.9

description: Network Graphs for institution grid.5590.9 created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8926013.v1
title: grid.5590.9

description: Network Graphs for institution grid.5590.9 created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8923574
title: Supplementary Fig. 10. Analyses of endothelial markers expressed in human muscle derived cell colonies

description: <br>Data submitted<br>Excel file: Summary Stat Results Tube Quantification_6h.xlsx<br>Microscopy pictures and ImageJ results: Tube-Quantification-6h.zipLSM immunofluorescence pictures (unmodified)<br><br>
DOI: 10.6084/m9.figshare.8922674
title: Kirkland Washington streets renamed

description: Table of original and current street names in downtown Kirkland, Washington.<br>Compiled from 1926 Sanborn fire insurance map, original plat maps, and current map.
DOI: 10.6084/m9.figshare.8923574.v1
title: Supplementary Fig. 10. Analyses of endothelial markers expressed in human muscle derived cell colonies

description: <br>Data submitted<br>Excel file: Summary Stat Results Tube Quantification_6h.xlsx<br>Microscopy pictures and ImageJ results: Tube-Quantification-6h.zipLSM immunofluorescence pictures (unmodified)<br><br>
DOI: 10.15131/shef.data.8922293
title: Alopecia areata patients show deficiency of FOXP3+CD39+ T regulatory cells and clonotypic restriction of Treg TCRbeta-chain, which highlights the immunopathological aspect of the disease

description: Raw sequencing reads in compressed fastq format to accompany the publication<i>https://doi.org/10.1371/journal.pone.0210308</i><br>See <i>sampleSheet.csv</i> for sample information and groups used for the analysis
DOI: 10.6084/m9.figshare.8922674.v1
title: Kirkland Washington streets renamed

description: Table of original and current street names in downtown Kirkland, Washington.<br>Compiled from 1926 Sanborn fire insurance map, original plat maps, and current map.
DOI: 10.15131/shef.data.8922293.v1
title: Alopecia areata patients show deficiency of FOXP3+CD39+ T regulatory cells and clonotypic restriction of Treg TCRbeta-chain, which highlights the immunopathological aspect of the disease

description: Raw sequencing reads in compressed fastq format to accompany the publication<i>https://doi.org/10.1371/journal.pone.0210308</i><br>See <i>sampleSheet.csv</i> for sample information and groups used for the analysis
DOI: 10.6084/m9.figshare.8920577
title: supplementary table 2-Identification of phages in Abr MTCC strains

description: Identification of phages in <i>Azospirillum brasilense</i>
DOI: 10.17028/rd.lboro.8918813
title: Supplementary Information Files for "Microencapsulation of Salmonella-Specific Bacteriophage Felix O1 Using Spray-Drying in a pH-Responsive Formulation and Direct Compression Tableting of Powders into a Solid Oral Dosage Form"

description: Supplementary Information Files for "Microencapsulation of Salmonella-Specific Bacteriophage Felix O1 Using Spray-Drying in a pH-Responsive Formulation and Direct Compression Tableting of Powders into a Solid Oral Dosage Form"<br>Abstract:The treatment of enteric bacterial infections using oral bacteriophage therapy can be challenging since the harsh acidic stomach environment renders phages inactive during transit through the gastrointestinal tract. Solid oral dosage forms allowing site-specific gastrointestinal delivery of high doses of phages, e.g., using a pH or enzymatic trigger, would be a game changer for the nascent industry trying to demonstrate the efficacy of phages, including engineered phages for gut microbiome modulation in expensive clinical trials. Spray-drying is a scalable, low-cost process for producing pharmaceutical agents in dry powder form. Encapsulation of a model Salmonella-specific phage (Myoviridae phage Felix O1) was carried out using the process of spray-drying, employing a commercially available Eudragit S100<sup>®</sup> pH-responsive anionic copolymer composed of methyl methacrylate-co-methacrylic acid formulated with trehalose. Formulation and processing conditions were optimised to improve the survival of phages during spray-drying, and their subsequent protection upon exposure to simulated gastric acidity was demonstrated. Addition of trehalose to the formulation was shown to protect phages from elevated temperatures and desiccation encountered during spray-drying. Direct compression of spray-dried encapsulated phages into tablets was shown to significantly improve phage protection upon exposure to simulated gastric fluid. The results reported here demonstrate the significant potential of spray-dried pH-responsive formulations for oral delivery of bacteriophages targeting gastrointestinal applications.<br>
DOI: 10.6084/m9.figshare.8918810
title: #DH2018 and #DH2019 Twitter Archive Counts. Summary Comparative Data Table

description: Summary comparative table in a csv file comparing Twitter metrics for #DH2018 and #DH2019 Twitter archives.<br>The metrics compared here are the result of a double method of collection as a means to ensure the validity of the collected data. I used a Python script to collect both archives, and then set the parameters as those for archives I collected using TAGS (see Priego 2018).<br> Even if the collected data still needs to be refined, when the counts are the same or very semilar I get a degree of certainty the data collected via TAGS from the Twitter Search API is close to being as reliable as it could be.<br> For 2018 and 2019 I managed to get the settings and timings right to achieve what looks like a complete set of #DH2018 and #DH2019 tweets. <br><br>In this output I share a comparative table in a CSV file where a summary of the main metrics from both archives can be compared. <br><br>As indicated in the table, it must be noted that there are important differences in mainly a) the number of days before and after the conference days included in the archive and b) the number of days each conference was held on according to their respective web pages / programmes.