cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nqju4j
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plecturocebus donacophilus (d'Orbigny, 1836)"
 ]
}

 The dataset includes 104 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032421-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3600224_d7
title: Additional file 7: Table S5. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: CpG methylation level across chromosomes. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3600224_d8
title: Additional file 12: Table S10. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: Methylation at CHG and CHH sites. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3600272_d1
title: Additional file 4: of Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

description: Gene Enrichment Analysis of GO terms for CNV regions that partially overlap genes. Enrichment analysis is based on Cryptococcus neoformans annotation for genes with 1:1 orthology between C. neoformans and C. gattii. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3600224_d10
title: Additional file 1: Table S1. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: Adult female Duroc RRBS and RNA-seq read depths. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3600272_d2
title: Additional file 5: of Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

description: Functional enrichment analysis GO terms for high VST genes based on PFam domains. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3600272_d3
title: Additional file 3: of Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

description: High VST regions with genome coordinates and gene identifiers relative to Cryptococcus gattii R265. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3600224_d12
title: Additional file 20: Table S13. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: GO terms and KEGG pathways enriched for ASE. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3600272_d4
title: Additional file 2: of Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

description: Individual copy number estimates and VST for each 100Â bp bin relative to the Cryptococcus gattii R265 genome. (XLSX 49905 kb)
DOI: 10.6084/m9.figshare.c.3600224_d20
title: Additional file 10: Table S8. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: Methylation level, proportion unmethylated, and methylated (&gt;10Â %) CpG sites across chromosomes in male validation dataset. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3600224_d22
title: Additional file 13: Table S11. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: Proportion of unmethylated non-CpG sites across chromosomes. (XLSX 11 kb)
DOI: 10.5517/ccdc.csd.cc2gws6c
title: CCDC 2290813: Experimental Crystal Structure Determination

description: Related Article: Kai Di, Dawei Yang, Linan Su, Ronghuan Du, Shengbin Dong, Baomin Wang, Jingping Qu|2024|Dalton Trans.|53|18754|doi:10.1039/D4DT02484B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gyj43
title: CCDC 2292485: Experimental Crystal Structure Determination

description: Related Article: Chang Liu, Mingyu Zhang, Lidan Zeng, Yong Wan, Mingji Dai|2024|J.Am.Chem.Soc.|146|32276|doi:10.1021/jacs.4c12121
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gyqlr
title: CCDC 2292685: Experimental Crystal Structure Determination

description: Related Article: B. Rogalewicz, T. Sierański, M. Szczesio, A. Olczak, K. Gobis, C. Orlewska, I. Korona-Głowniak, A. Korga-Plewko, M. Iwan, M. Michalczuk, J. Kubik, G. Adamczuk, M. Korga, N. Rutkowska, T. Boruta, K. Gas, M. Sawicki, E. Poleszak, W. Maniukiewicz, M. Świątkowski, A. Czylkowska|2024|RSC Advances|14|36295|doi:10.1039/D4RA06874B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h0ggg
title: CCDC 2294355: Experimental Crystal Structure Determination

description: Related Article: Shisheng Huang, Jilong Luo, Ping Chen, Jiean Chen, Zhaofeng Wang|2024|Chemical Science|15|18564|doi:10.1039/D4SC06166G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.28020893
title: Gloriosa superba raw GC-MS files

description: Metabolite extraction from Gloriosa superba
DOI: 10.5517/ccdc.csd.cc2h6lfr
title: CCDC 2300244: Experimental Crystal Structure Determination

description: Related Article: Sayantan Mukhopadhyay, Rajata Kumar Sahoo, A. Ganesh Patro, Anwesh Prasad Khuntia, Sharanappa Nembenna|2024|Dalton Trans.|53|18207|doi:10.1039/D3DT04080A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3600326_d2
title: Additional file 4: of Transcriptomic response of yeast cells to ATX1 deletion under different copper levels

description: The genes that were identified as significantly and differentially expressed in this study. The lists of the genes that have been identified to be significantly and differentially expressed in response to mutant effect (G1), copper effect (G2), additive effect (G3) and interaction effect (G4) are provided in the corresponding sheets together with the enriched GO process terms within in each group. (XLSX 446 kb)
DOI: 10.5517/ccdc.csd.cc2hhhl3
title: CCDC 2308805: Experimental Crystal Structure Determination

description: Related Article: David R. Husbands, Theo Tanner, Adrian C. Whitwood, Neil S. Hodnett, Katherine M. P. Wheelhouse, Ian J. S. Fairlamb|2024|Chemical Science|15|18627|doi:10.1039/D4SC05346J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3600329_d2
title: Additional file 7: Table S1. of Skipper genome sheds light on unique phenotypic traits and phylogeny

description: Statistics for sequencing data, data processing and genome assembly, related to experimental procedure. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3600326_d3
title: Additional file 9: of Transcriptomic response of yeast cells to ATX1 deletion under different copper levels

description: The complete genetic interaction network. The list of the nodes grouped according to their distance to ATX1 and CCC2 is provided in this file. (XLSX 6197 kb)
DOI: 10.6084/m9.figshare.c.3600329_d3
title: Additional file 1: Table S2. of Skipper genome sheds light on unique phenotypic traits and phylogeny

description: Quality and composition of Lepidoptera genomes, related to TableÂ 1. (XLSX 53 kb)
DOI: 10.15468/dl.98834c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetraodon porphyreus Temminck & Schlegel, 1850",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032424-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3600356_d2
title: Additional file 3: of IPC – Isoelectric Point Calculator

description: IPC protein dataset (2,324 proteins, derived from SWISS-2DPAGE and PIP-DB after 99 % redundancy removal) – fasta formatted. (FASTA 969 kb)
DOI: 10.6084/m9.figshare.c.3600356_d4
title: Additional file 2: of IPC – Isoelectric Point Calculator

description: IPC peptide dataset (16,882 peptides, derived from Gauci et al. PHENYX and SEQUEST after 99 % redundancy removal) – fasta formatted. (FASTA 999 kb)
DOI: 10.6084/m9.figshare.c.3600380_d2
title: Additional file 1: Table S1. of Disorders of sex development: insights from targeted gene sequencing of a large international patient cohort

description: DSD gene variants. Each variant found in a diagnostic gene (after the filtering and curation process) is shown. In some cases where the gene is inherited in an autosomal recessive manner, two variants are grouped together. Inheritance has been indicated where familial samples were available: negative indicates negative for variant and N/A sample not available. De novo events have only been noted where both parental samples were available and found to be negative for the change. Previously reported refers to a variant being described in either ClinVar, HGMD, or a publication in a peer-reviewed journal via a PubMed search. Variants were classified consistent with previous MPS publications of DSD cohorts [8, 10] which were based on ACMG guidelines [15]. VUS were called for three reasons: 1 = fits phenotype but predicted to be benign; 2 = damaging but doesn’t fit phenotype; or 3 = variant in the AR repetitive region. Patients marked with an asterisk were identified to have two or more diagnostic gene variants. Null variants (frameshifts, splice sites mutations, and premature stop codons) are shown in bold. Patients have been classified based on clinical notes provided, according to the recommended classification of DSD in the Chicago consensus report. Classifications: CGD complete gonadal dysgenesis, DASA disorders of androgen synthesis or action, DSD DSD of “unknown” origin; hypospadias, LCH Leydig cell hypoplasia, OT ovotesticular DSD, PGD partial gonadal dysgenesis, PMDS persistent Müllerian duct syndrome; syndromic, T testicular DSD. Related affected individuals are indicated. File is in Excel spreadsheet format. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3600395_d4
title: Additional file 6: Table S8. of The human olfactory transcriptome

description: Genomic coordinates of the OR transcripts (in gtf format, hg19). (GTF 70 kb)
DOI: 10.6084/m9.figshare.c.3600395_d6
title: Additional file 3: Table S3. of The human olfactory transcriptome

description: Olfactory over expressed genes. Tissue abbreviation: HOE, human olfactory epithelium; MOE: mouse olfactory epithelium; MOB: mouse olfactory bulb; RES: respiratory epithelium. Numbers in these columns are the averaged fold change relative to the illumina body map control samples (CTRL; FPKM), MOE_encode: the average fold change of mouse olfactory epithelium relative to mouse ENCODE data. OSN- olfactory sensory neurons. #pub- number of associated publications that were found in the automatic literature search. Table S4. Olfactory over expressed genes with prior evidences of an olfactory role. HOE: the fold change of human olfactory epithelium relative to the control tissues. MOE: the fold change of mouse olfactory epithelium relative to the control tissues. The 16 illumina Body Map tissues were used as controls in the calculation. MOE_encode: the fold change of mouse olfactory epithelium relative to 11 mouse ENCODE tissues. OSN- the fold change in mouse olfactory neurons relative to mouse olfactory epithelium. In bold- genes mentioned in the manuscript text. Gene symbols are from HGNC ( http://www.genenames.org/ ). Table S5. Olfactory over expressed genes with little or no previous knowledge on olfactory role. See Additional file 3: Table S4 for more details. Symbols with * are from GeneCards ( http://www.genecards.org/ ), with an informal gene name. (XLSX 1879 kb)
DOI: 10.6084/m9.figshare.c.3600395_d7
title: Additional file 4: Table S6. of The human olfactory transcriptome

description: Expression of the lipocalin family members. Mouse was calculated relative to Mouse ENCODE data ( http://chromosome.sdsc.edu/mouse/download.html ), see methods. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3600425_d2
title: Additional file 2: of Is upper limb virtual reality training more intensive than conventional training for patients in the subacute phase after stroke? An analysis of treatment intensity and content

description: Data file. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3600437_d1
title: Additional file 2: Table S1. of Identification of sensory hair-cell transcripts by thiouracil-tagging in zebrafish

description: TU-tagged versus input RNAseq data from wild-type control larvae. (XLSX 2337 kb)
DOI: 10.6084/m9.figshare.c.3600443_d1
title: Additional file 5: Table S5. of Immune cell subsets and their gene expression profiles from human PBMC isolated by Vacutainer Cell Preparation Tube (CPTâ ˘) and standard density gradient

description: Comparison of gene expression of CD4+ T cells separated from PBMC isolated using CPT and Ficoll. A two-group comparison with permutation analysis for differential expression was performed, as described in Methods, on microarray data to identify differentially expressed genes between CD4+ T cells separated from CPT- and Ficoll-isolated PBMC. Probsets are ranked according to the FDR value. (CSV 26355 kb)
DOI: 10.6084/m9.figshare.c.3600437_d2
title: Additional file 1: Table S1. of Identification of sensory hair-cell transcripts by thiouracil-tagging in zebrafish

description: TU-tagged versus input RNAseq data from Tg(myo6b:UPRT) transgenic larvae. (XLSX 2308 kb)
DOI: 10.15468/dl.de6zzr
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Decapterus maruadsi (Temminck & Schlegel, 1843)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 394 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032427-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25810/5k94-6m55
title: FIRED Dominican Republic Nov 2000 - July 2024

description: This is event-level polygons for the fire event delineation (FIRED) product for DOMINICAN REPUBLIC from November 2000  to August 2024. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v061/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (https://github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 1 pixels and 5 days. Daily polygons are included and the event identification numbers are the same for both files, but the event-level product has only single polygons for each entire event, while the daily product has separate polygons for each date per event. See the associated paper for more details on the methods and more:

Balch, J.K.; St. Denis, L.A.; Mahood, A.L.; Mietkiewicz, N.P.; Williams, T.M.; McGlinchy, J.; Cook, M.C. FIRED (Fire Events Delineation): An Open, Flexible Algorithm and Database of US Fire Events Derived from the MODIS Burned Area Product (2001–2019). Remote Sens. 2020, 12, 3498. https://doi.org/10.3390/rs12213498
DOI: 10.6084/m9.figshare.c.3600464_d4
title: Additional file 3: of Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis

description: Table S2. List of peptides and their characteristic identified in plain IgG antibody immunoprecipitates. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3600446_d7
title: Additional file 7: Table S6. of Transcriptomic analyses of the radiation response in head and neck squamous cell carcinoma subclones with different radiation sensitivity: time-course gene expression profiles and gene association networks

description: Differentially expressed genes in response to irradiation with 8Â Gy for all CAL-33 cell lines. Differentially expressed genes are listed together with the corresponding fold-changes. Additionally, commonly and exclusively differentially expressed genes have been included. (XLSX 2575Â kb)
DOI: 10.6084/m9.figshare.c.3600464_d5
title: Additional file 4: of Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis

description: Table S3. List of peptides and their characteristic identified in K protein specific antibody (epitope #54) immunoprecipitates. (XLSX 113Â kb)
DOI: 10.6084/m9.figshare.c.3600464_d6
title: Additional file 6: of Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis

description: Table S5. The list of proteins in the anti-hnRNP K (epitope #54) immunoprecipitated samples identified with at least 2 peptides and information on identified proteins including number of peptides identified per protein and the percent of coverage. Proteins matching to the same sets of peptides were grouped. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3600446_d9
title: Additional file 8: Table S7. of Transcriptomic analyses of the radiation response in head and neck squamous cell carcinoma subclones with different radiation sensitivity: time-course gene expression profiles and gene association networks

description: Significantly enriched pathways of early and late responding genes after irradiation with 8 Gy. Pathways with FDR
DOI: 10.6084/m9.figshare.c.3600464_d7
title: Additional file 2: of Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis

description: Table S1. List of peptides and their characteristic identified in K protein bands from SDS-PAGE. (XLSX 69Â kb)
DOI: 10.6084/m9.figshare.c.3600446_d10
title: Additional file 9: File S1. of Transcriptomic analyses of the radiation response in head and neck squamous cell carcinoma subclones with different radiation sensitivity: time-course gene expression profiles and gene association networks

description: Reconstructed gene association networks. All obtained gene association networks are provided as R-objects of type igraph. (RDATA 32863Â kb)
DOI: 10.15468/dl.bacga3
title: Occurrence Download

description: A dataset containing 24314 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 24314 records from 387 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032425-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28020908
title: Iris sp. raw GC-MS files

description: Metabolite extraction from Iris sp.
DOI: 10.6084/m9.figshare.28020908.v1
title: Iris sp. raw GC-MS files

description: Metabolite extraction from Iris sp.
DOI: 10.6084/m9.figshare.c.3600566_d3
title: Additional file 2 of A correction method for systematic error in 1H-NMR time-course data validated through stochastic cell culture simulation

description: Stochastic trend generation functions. R script containing all the functions used to simulate realistic timecourse trends. There is an example at the end of the file that shows how the functions are combined to generate a trend. (R 17.6 KB)
DOI: 10.6084/m9.figshare.c.3600566_d4
title: Additional file 1 of A correction method for systematic error in 1H-NMR time-course data validated through stochastic cell culture simulation

description: Internal standard error correction algorithm. R script containing two function definitions â   f_smooth() used to generate the smoothing fit and correct_relative_deviation() to perform the corrections. (R 2.56 KB)
DOI: 10.6084/m9.figshare.c.3600575_d2
title: MOESM1 of A systematic review of sub-microscopic Plasmodium vivax infection

description: Additional file 2. Summary of study characteristics.
DOI: 10.6084/m9.figshare.c.3600581_d1
title: Additional file 1: Figure S1. of Dissecting genetics of cutaneous miRNA in a mouse model of an autoimmune blistering disease

description: Flowchart describing the workflow of analysis. The flowchart provides an overview of the analysis performed for understanding regulation of miRNAs and their contribution to the disease phenotype. Figure S2 Interaction network accessed via IPA software for epistasis of miR-501. The graph depicts the interacting genes identified from epistasis scan of miRNA miR-501 in chromosome 1 and chromosome 2. The graph shows all known gene interactions between the two loci where genes colored in yellow are from locus on chromosome 2 and green are from locus on chromosome 1. The red line shows the possible pathway for the regulation of miR-501. Figure S3 qRT-PCR validation of miR-223 expression in EBA and normal murine skin. (ZIP 637 kb)
DOI: 10.6084/m9.figshare.c.3600575_d3
title: MOESM3 of A systematic review of sub-microscopic Plasmodium vivax infection

description: Additional file 3. Sensitivity and specificity of microscopy compared to PCR.
DOI: 10.34740/kaggle/dsv/10184206
title: Balochi Language to English Translation Dataset