cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12610147.v1
title: Additional file 7 of QSAR-derived affinity fingerprints (part 1): fingerprint construction and modeling performance for similarity searching, bioactivity classification and scaffold hopping

description: Additional file 7. Biological activity classification task. Average values of AUC and EF5 for individual sets in the CLASS data sets obtained using various settings (affinity cutoffs of 5-8, AD estimation turned on and off) for the construction of the b-QAFFP and rv-QAFFP fingerprints.
DOI: 10.6084/m9.figshare.12610132
title: Additional file 2 of QSAR-derived affinity fingerprints (part 1): fingerprint construction and modeling performance for similarity searching, bioactivity classification and scaffold hopping

description: Additional file 2. Similarity searching task. The list of HET and HOM data sets including the number of actives and inactives.
DOI: 10.6084/m9.figshare.12610129
title: Additional file 1 of QSAR-derived affinity fingerprints (part 1): fingerprint construction and modeling performance for similarity searching, bioactivity classification and scaffold hopping

description: Additional file 1. QAFFP construction. Statistics (ligand count and quality criteria $$q^{2}$$ q 2 and $$R_{0}^{'2}$$ R 0 ′ 2 ) of all 1360 trained models. Each model is given by the target ChEMBL ID and by an activity type (Ki, Kd, IC50 or EC50). 440 models used to construct the QAFFP fingerprint highlighted in green. Ligand data of 440 models (given as ligand ChEMBL ID, SMILES, activity type and activity value).
DOI: 10.6084/m9.figshare.12610138.v1
title: Additional file 4 of QSAR-derived affinity fingerprints (part 1): fingerprint construction and modeling performance for similarity searching, bioactivity classification and scaffold hopping

description: Additional file 4. Scaffold hopping task. The list of targets used for scaffold hopping potential assessment, the number of ACSKs and RACSKs and the number of ACSKs retrieved using the Morgan2, b-QAFFP and rv-QAFFP fingerprints and the combination rv+b-QAFFP.
DOI: 10.6084/m9.figshare.12610129.v1
title: Additional file 1 of QSAR-derived affinity fingerprints (part 1): fingerprint construction and modeling performance for similarity searching, bioactivity classification and scaffold hopping

description: Additional file 1. QAFFP construction. Statistics (ligand count and quality criteria $$q^{2}$$ q 2 and $$R_{0}^{'2}$$ R 0 ′ 2 ) of all 1360 trained models. Each model is given by the target ChEMBL ID and by an activity type (Ki, Kd, IC50 or EC50). 440 models used to construct the QAFFP fingerprint highlighted in green. Ligand data of 440 models (given as ligand ChEMBL ID, SMILES, activity type and activity value).
DOI: 10.6084/m9.figshare.12610135.v1
title: Additional file 3 of QSAR-derived affinity fingerprints (part 1): fingerprint construction and modeling performance for similarity searching, bioactivity classification and scaffold hopping

description: Additional file 3. Biological activity classification task. The list of CLASS data sets including the number of actives and inactives.
DOI: 10.6084/m9.figshare.12610141.v1
title: Additional file 5 of QSAR-derived affinity fingerprints (part 1): fingerprint construction and modeling performance for similarity searching, bioactivity classification and scaffold hopping

description: Additional file 5. Similarity searching task. Average values of AUC and EF5 for individual sets in the HET and HOM data sets obtained using various settings (affinity cutoffs of 5-8, AD estimation turned on and off) for the construction of the b-QAFFP fingerprint.
DOI: 10.6084/m9.figshare.12610120
title: Additional file 6 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 6: Supplementary Table 6. The combined list of genes for the HER and Estrogen signaling pathways according to KEGG, with their corresponding histone trimethylation status and GRO-seq values in FPKM.
DOI: 10.6084/m9.figshare.12610126
title: Additional file 8 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 8: Supplementary Table 8. The complete differential expression analysis of genes downstream of the estrogen signaling pathway, comparing the ER+ with the ER- HER2+ patients in the TCGA data, with the corresponding bivalent promoter status found in our 4 cell lines.
DOI: 10.6084/m9.figshare.12610132.v1
title: Additional file 2 of QSAR-derived affinity fingerprints (part 1): fingerprint construction and modeling performance for similarity searching, bioactivity classification and scaffold hopping

description: Additional file 2. Similarity searching task. The list of HET and HOM data sets including the number of actives and inactives.
DOI: 10.6084/m9.figshare.12610117
title: Additional file 5 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 5: Supplementary Table 5. The list of genes in the Estrogen Signaling pathway according to KEGG, with their histone trimethylation status and corresponding gene expression (in FPKM).
DOI: 10.6084/m9.figshare.12610126.v1
title: Additional file 8 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 8: Supplementary Table 8. The complete differential expression analysis of genes downstream of the estrogen signaling pathway, comparing the ER+ with the ER- HER2+ patients in the TCGA data, with the corresponding bivalent promoter status found in our 4 cell lines.
DOI: 10.6084/m9.figshare.12610120.v1
title: Additional file 6 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 6: Supplementary Table 6. The combined list of genes for the HER and Estrogen signaling pathways according to KEGG, with their corresponding histone trimethylation status and GRO-seq values in FPKM.
DOI: 10.6084/m9.figshare.12610123
title: Additional file 7 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 7: Supplementary Table 7. The complete differential expression analysis of genes downstream of the HER2 pathway, comparing the ER+ with the ER- HER2+ patients in the TCGA data, with the corresponding bivalent promoter status found in our 4 cell lines.
DOI: 10.6084/m9.figshare.12610114
title: Additional file 4 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 4: Supplementary Table 4. The list of genes in the HER pathway according to KEGG, with their histone trimethylation status and corresponding gene expression.
DOI: 10.6084/m9.figshare.12610123.v1
title: Additional file 7 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 7: Supplementary Table 7. The complete differential expression analysis of genes downstream of the HER2 pathway, comparing the ER+ with the ER- HER2+ patients in the TCGA data, with the corresponding bivalent promoter status found in our 4 cell lines.
DOI: 10.6084/m9.figshare.12610111
title: Additional file 3 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 3: Supplementary Table 3. The genes identified in a previous study as markers for regulation in the ER and HER2 pathways.
DOI: 10.6084/m9.figshare.12610114.v1
title: Additional file 4 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 4: Supplementary Table 4. The list of genes in the HER pathway according to KEGG, with their histone trimethylation status and corresponding gene expression.
DOI: 10.6084/m9.figshare.12610117.v1
title: Additional file 5 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 5: Supplementary Table 5. The list of genes in the Estrogen Signaling pathway according to KEGG, with their histone trimethylation status and corresponding gene expression (in FPKM).
DOI: 10.6084/m9.figshare.12610108
title: Additional file 2 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 2: Supplementary Table 2. The TCGA patients that are HER2+ with their ER status as determined from a previous study. (CSV 3 kb)
DOI: 10.6084/m9.figshare.12610108.v1
title: Additional file 2 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 2: Supplementary Table 2. The TCGA patients that are HER2+ with their ER status as determined from a previous study. (CSV 3 kb)
DOI: 10.6084/m9.figshare.12610105
title: Additional file 1 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 1: Supplementary Table 1. Information and accession numbers for ChIP-seq and RNA-seq of the 6 cell lines used in this study.
DOI: 10.6084/m9.figshare.12610105.v1
title: Additional file 1 of Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

description: Additional file 1: Supplementary Table 1. Information and accession numbers for ChIP-seq and RNA-seq of the 6 cell lines used in this study.
DOI: 10.6084/m9.figshare.12610034
title: Additional file 1 of Mapping aboveground biomass and its prediction uncertainty using LiDAR and field data, accounting for tree-level allometric and LiDAR model errors

description: Additional file 1 Supplementary material.
DOI: 10.6084/m9.figshare.12610036
title: Additional file 2 of Sparse reduced-rank regression for integrating omics data

description: Additional file 2 Software. Matlab codes that implements the proposed CISERRR algorithm.
DOI: 10.6084/m9.figshare.12610036.v1
title: Additional file 2 of Sparse reduced-rank regression for integrating omics data

description: Additional file 2 Software. Matlab codes that implements the proposed CISERRR algorithm.
DOI: 10.6084/m9.figshare.12609923
title: Gene database of Bacillus thuringiensis ATCC 10792

description: <i>Bacillus thuringiensis</i> is a Gram-positive, soil dwelling bacterium that can serve as a biopesticide due to the action of endotoxins that it secretes. Capable of sporulation, spores of <i>B. thuringiensis</i> could come together with protein crystals of endotoxins to form bipyramidal crystals. Though the annotated genome sequence of <i>B. thuringiensis</i> is available, much remains to be known about this bacterium, particularly the pathogenesis mechanism when it becomes a parasite inside caterpillar, moths, or mosquitoes. This work reports the gene database of <i>B. thuringiensis</i> ATCC 10792 obtained by parsing the annotated genome sequence obtained from Genbank. Comprising gene name, gene function and gene sequence of all genes in the genome of <i>B. thuringiensis</i>, the resource should find use in locating putative targets for molecular cloning or loss of function analysis in efforts to identify the molecular effectors that partake in pathogenesis of the bacterium.
DOI: 10.6084/m9.figshare.12609920
title: Effect of BMD supplementation on relative abundances of bacterial genera in caecum content using 16S rRNA sequencing

description: Effect of BMD supplementation on relative abundances of bacterial genera in caecum content using 16S rRNA sequencing.
DOI: 10.6084/m9.figshare.12609941
title: Data Parra-Saldívar et al. Ecological knowledge and wellbeing

description: Dataset from a study of ecological knowledge and wellbeing
DOI: 10.6084/m9.figshare.12609941.v1
title: Data Parra-Saldívar et al. Ecological knowledge and wellbeing

description: Dataset from a study of ecological knowledge and wellbeing
DOI: 10.6084/m9.figshare.12609920.v1
title: Effect of BMD supplementation on relative abundances of bacterial genera in caecum content using 16S rRNA sequencing

description: Effect of BMD supplementation on relative abundances of bacterial genera in caecum content using 16S rRNA sequencing.
DOI: 10.6084/m9.figshare.12609734
title: JVASP-46889 to JVASP-50106

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.12609737
title: JVASP-52283 to JVASP-55536

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.12609731
title: JVASP-43169 to JVASP-46888

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.12609737.v1
title: JVASP-52283 to JVASP-55536

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.12609731.v1
title: JVASP-43169 to JVASP-46888

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.12609734.v1
title: JVASP-46889 to JVASP-50106

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.12609728
title: Wormbase Test file

description: Wormbase definition gene expression data
DOI: 10.6084/m9.figshare.12609725
title: JVASP-41162 to JVASP-43167

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.12609725.v1
title: JVASP-41162 to JVASP-43167

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.12609680
title: Paleoecology Geospatial Needs Survey

description: Anonymized results from a survey produced to understand user geospatial needs in the paleogeosciences.
DOI: 10.6084/m9.figshare.12609728.v2
title: Wormbase Test file

description: Wormbase definition gene expression data
DOI: 10.6084/m9.figshare.12609728.v1
title: Wormbase Test file

description: Wormbase definition gene expression data
DOI: 10.6084/m9.figshare.12609680.v2
title: Paleoecology Geospatial Needs Survey

description: Anonymized results from a survey produced to understand user geospatial needs in the paleogeosciences.
DOI: 10.6084/m9.figshare.12609680.v1
title: Paleoecology Geospatial Needs Survey

description: Anonymized results from a survey produced to understand user geospatial needs in the paleogeosciences.
DOI: 10.6084/m9.figshare.12609434
title: JVASP-39334 to JVASP-41154

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.12609431
title: JVASP-27335 to JVASP-39330

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.12609401
title: Source data for Fig. 3,4 in "Vernier frequency division with dual-microresonator solitons"

description: This source data file contains all of the raw data for the figure 3 and figure 4 in "Vernier frequency division with dual-microresonator solitons".
DOI: 10.6084/m9.figshare.12609368
title: Retrospective quantitative genetic analysis of CIMMYT’s wheat yield testing strategies and genomic prediction of global wheat yields

description: Genotyping data of 24,067 lines from CIMMYT's yield testing nurseries with 14,389 genotyping-by-sequencing markers that were filtered minimally for &lt;50% missing data and a minor allele frequency of 0.01.<br>
DOI: 10.6084/m9.figshare.12609365
title: Metadata record for: Quantum chemical calculations for over 200,000 organic radicals and 40,000 associated closed-shell molecules

description: This dataset contains key characteristics about the data described in the Data Descriptor Quantum chemical calculations for over 200,000 organic radicals and 40,000 associated closed-shell molecules. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12609365.v1
title: Metadata record for: Quantum chemical calculations for over 200,000 organic radicals and 40,000 associated closed-shell molecules

description: This dataset contains key characteristics about the data described in the Data Descriptor Quantum chemical calculations for over 200,000 organic radicals and 40,000 associated closed-shell molecules. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12609401.v1
title: Source data for Fig. 3,4 in "Vernier frequency division with dual-microresonator solitons"

description: This source data file contains all of the raw data for the figure 3 and figure 4 in "Vernier frequency division with dual-microresonator solitons". The data is categorized into four folders: OSA data, ESA data, Phase noise data, and Counter data.
DOI: 10.6084/m9.figshare.12609368.v2
title: Retrospective quantitative genetic analysis of CIMMYT’s wheat yield testing strategies and genomic prediction of global wheat yields

description: Genotyping data of 24,067 lines from CIMMYT's yield testing nurseries with 14,389 genotyping-by-sequencing markers that were filtered minimally for &lt;50% missing data and a minor allele frequency of 0.01.<br>
DOI: 10.6084/m9.figshare.12609329
title: Muliticriteria Wetland Network

description: This network dataset is created to investigate wetland connectivity using a multi-criteria optimization approach. Three arc attributes represent cost associated with movement on the landscape. The digital elevation model is used to compute the topographic wetness index and cost related to elevation change. The landuse/landcover layer is basis for calculating likelihood of successful traversal. The input geographic information layers are available here: http://msdis.missouri.edu/<br>The built network consists of 12 wetlands serving as origin and destination, and 1277 network arcs. For each arc there are several arc attributes as described below:<br><br>ID1: reference to arc endpoint at the lower altitudeID2: reference to arc endpoint at the higher altitudeDEM1: elevation at endpoint 1DEM2: elevation at endpoint 2<br>DEMc: elevation at midpoint of arcTWI1: topographic wetness index at endpoint 1TWI2: topographic wetness index at endpoint 2TWIc: topographic wetness index at midpoint of arcLUL1: landuse/landcover type at endpoint 1LUL2: landuse/landcover type at endpoint 2LULc: landuse/landcover type at midpoint of arcLULb: base successful traversal likelihood associated with each landuse/landcover typeLULf: final value of successful traversal likelihood (considering arc length)<br>DIST: arc length in meters<br>
DOI: 10.6084/m9.figshare.12609353
title: INTERVIEW SCHEDULES

description: Study analyses the position of the masses in Nigeria's pursuit of her Africa first foreign policy thrust. This work is part of the findings in a broader study on Nigeria's quest for a permanent UNSC: What relevance for domestic factors? <br>Keywords: Afrocentrism, National Interest and Citizen Welfare in Nigeria’s.<br> Afrocentrism, National Interest and Citizen Welfare in Nigeria’s Foreign Policy Maneuvers.<b></b>
DOI: 10.6084/m9.figshare.12609368.v1
title: Retrospective quantitative genetic analysis of CIMMYT’s wheat yield testing strategies and genomic prediction of global wheat yields

description: Genotyping data of 24,067 lines from CIMMYT's yield testing nurseries with 14,389 genotyping-by-sequencing markers that were filtered minimally for &lt;50% missing data and a minor allele frequency of 0.01.<br>
DOI: 10.6084/m9.figshare.12609317
title: Proportion of COVID-19-related news articles (8 countries)

description: Proportion of COVID-19-related news articles in 8 countries (obtained from Media Cloud, https://mediacloud.org/)<br>
DOI: 10.6084/m9.figshare.12609299
title: COVID-19 cases rate for England

description: COVID-19 cases rate for England as estimated by Public Health England (obtained via https://coronavirus.data.gov.uk/)<br>
DOI: 10.6084/m9.figshare.12609353.v2
title: INTERVIEW SCHEDULES

description: Study analyses the position of the masses in Nigeria's pursuit of her Africa first foreign policy thrust. This work is part of the findings in a broader study on Nigeria's quest for a permanent UNSC: What relevance for domestic factors? <br>Keywords: Afrocentrism, National Interest and Citizen Welfare in Nigeria’s.<br> Afrocentrism, National Interest and Citizen Welfare in Nigeria’s Foreign Policy Maneuvers.<b></b>
DOI: 10.6084/m9.figshare.12609206
title: Confirmed COVID-19 cases and deaths (8 countries)

description: Confirmed COVID-19 cases and deaths for the 8 countries in our analysis as obtained by the ECDC.<br>
DOI: 10.6084/m9.figshare.12609299.v1
title: COVID-19 cases rate for England

description: COVID-19 cases rate for England as estimated by Public Health England (obtained via https://coronavirus.data.gov.uk/)<br>
DOI: 10.6084/m9.figshare.12609353.v1
title: INTERVIEW SCHEDULES

description: Study analyses the position of the masses in Nigeria's pursuit of her Africa first foreign policy thrust. This work is part of the findings in a broader study on Nigeria's quest for a permanent UNSC: What relevance for domestic factors? <br>Keywords: Afrocentrism, National Interest and Citizen Welfare in Nigeria’s.<br> Afrocentrism, National Interest and Citizen Welfare in Nigeria’s Foreign Policy Maneuvers.<b></b>
DOI: 10.17028/rd.lboro.12609128
title: Supplementary information files for: Motivational processes during physical endurance tasks

description: Supplementary information files for: Motivational processes during physical endurance tasks. Purpose: Motivational processes are insufficiently recognized in models of human endurance. Hence, two studies examined a motivational model proposing that the quality of pre-task autonomous motivation influences performance at high intensity via the in-task temptation to reduce effort and value of goal pursuit. Methods: The studies involved 40 participants each (Study 1: 33% female, Mage = 21.55, SD = 1.97; Study 2: 45% female, Mage = 22.65, SD = 2.61) completing measures of autonomous motivation prior to a ten-minute cycling task. Measures of the temptation to reduce effort and value of goal pursuit were taken every minute during the trial (Study 1) or near the midpoint of the trial (Study 2). Data were analyzed using multilevel growth and parallel mediation models. Results: In both studies, autonomous motivation was associated with lower temptation to reduce effort and higher value of goal pursuit, which were subsequently characteristic of better performance. Study 1 revealed nuances within these relationships depending on whether task initiation or change over time were considered. In Study 2, indirect effects of autonomous motivation on performance via temptation to reduce effort (b = .20, 95% CIs .03 ― .50) and goal value (b = .26, 95% CIs .01 ― .44) were evidenced. Conclusion: Two studies supported a theoretically viable model explaining the dynamics between pre-task and in-task motivation underpinning performance at high intensities.