cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.g7qpbm
title: Occurrence Download

description: A dataset containing 2439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gypsophila stevenii Fisch. ex Schrank, Gyraulus acronicus (J.B.Férussac, 1807))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 2439 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241820-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.158188
title: DEIR EL-MÉDINA_di_2010_00059

description: Référence : di_2010_00059<br />Site : Deir el-Médina<br />Secteur : Second caveau (TT_359 (Inherkhâouy)); TT_359 (Inherkhâouy)<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.158189
title: DEIR EL-MÉDINA_di_2010_00060

description: Référence : di_2010_00060<br />Site : Deir el-Médina<br />Secteur : Second caveau (TT_359 (Inherkhâouy)); TT_359 (Inherkhâouy)<br />Type : photographie<br />
DOI: 10.15468/dl.77snmr
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eulonche lanceolaria Grote, 1875",
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 56 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130915-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.158190
title: DEIR EL-MÉDINA_di_2010_00061

description: Référence : di_2010_00061<br />Site : Deir el-Médina<br />Secteur : Second caveau (TT_359 (Inherkhâouy)); TT_359 (Inherkhâouy)<br />Type : photographie<br />
DOI: 10.15468/dl.9ecr7x
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Smelowskia micrantha (Botsch. & Vved.) Al-Shehbaz & S.I.Warwick"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135277-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9928kq
title: Occurrence Download

description: A dataset containing 31373 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gyraulus albus (O.F.Müller, 1774), Gyraulus crista (Linnaeus, 1758))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 31373 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241828-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.158191
title: DEIR EL-MÉDINA_di_2010_00062

description: Référence : di_2010_00062<br />Site : Deir el-Médina<br />Secteur : Second caveau (TT_359 (Inherkhâouy)); TT_359 (Inherkhâouy)<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.158192
title: DEIR EL-MÉDINA_di_2010_00063

description: Référence : di_2010_00063<br />Site : Deir el-Médina<br />Secteur : Second caveau (TT_359 (Inherkhâouy)); TT_359 (Inherkhâouy)<br />Type : photographie<br />
DOI: 10.15468/dl.7scf39
title: Occurrence Download

description: A dataset containing 4749 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Country is Ireland",
 "Country is Isle of Man",
 "Country is unknown or invalid"
 ]
 },
 "TaxonKey is Cetorhinus maximus (Gunnerus, 1765)",
 "Year 2000-2022"
 ]
}

 The dataset includes 4749 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123002-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.158193
title: DEIR EL-MÉDINA_di_2010_00064

description: Référence : di_2010_00064<br />Site : Deir el-Médina<br />Secteur : Second caveau (TT_359 (Inherkhâouy)); TT_359 (Inherkhâouy)<br />Type : photographie<br />
DOI: 10.15468/dl.3rxcza
title: Occurrence Download

description: A dataset containing 586 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Smelowskia tibetica (Thomson) Lipsky"
 ]
}

 The dataset includes 586 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135297-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.158194
title: DEIR EL-MÉDINA_di_2010_00065

description: Référence : di_2010_00065<br />Site : Deir el-Médina<br />Secteur : Second caveau (TT_359 (Inherkhâouy)); TT_359 (Inherkhâouy)<br />Type : photographie<br />
DOI: 10.15468/dl.j8kn7a
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Haasea flavescens (Latzel, 1884))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 65 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241845-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hyjrcw
title: Occurrence Download

description: A dataset containing 2632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "TaxonKey is Balsamorhiza Hook.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2632 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000865-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vd2zn2
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhodambulyx davidi, Rhodambulyx davidi, Rhodambulyx davidi Mell, 1939, 157921702, Rhodambulyx davidi Mell, 1939, Rhodambulyx davidi Mell 1939, Rhodambulyx davidi Mell, 1939)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135313-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pe9scn
title: Occurrence Download

description: A dataset containing 2925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Boletus ferrugineus Schaeff.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 2925 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0331098-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gccvus
title: Occurrence Download

description: A dataset containing 624719 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Literature Occurrence"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Saxifragaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 624719 records from 810 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043836-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.698kuu
title: Occurrence Download

description: A dataset containing 466 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stelis superbiens Lindl."
 ]
}

 The dataset includes 466 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0142068-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84wtfw
title: Occurrence Download

description: A dataset containing 632342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Month is July",
 "Month is August",
 "Month is September",
 "Month is October",
 "Month is November",
 "Month is December"
 ]
 },
 "TaxonKey is Anas platyrhynchos Linnaeus, 1758",
 "Year 2018-2018"
 ]
}

 The dataset includes 632342 records from 187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0386279-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/pr9vxg94gd.1
title: Data for Sun et al. (2024) 'The Role of Acantharia in Southern Ocean Strontium Cycling and Carbon Export: Insights from Dissolved Strontium Concentrations and Seasonal Flux Patterns'

description: This record presents the strontium (Sr) data used in the paper 'The Role of Acantharia in Southern Ocean Strontium Cycling and Carbon Export: Insights from Dissolved Strontium Concentrations and Seasonal Flux Patterns', Sun et al. (2024). All methods for the dataset are thoroughly documented and cross-referenced in the paper. 

Introduction: The dataset examines how Acantharia, marine protists with celestite (SrSO4) skeletons, influence strontium (Sr) and carbon cycling in the Southern Ocean. Acantharia utilize surface Sr to build skeletons and release it upon death, significantly impacting Sr distribution. Their cysts, also celestite-based, act as effective ballast for particulate organic carbon (POC). Analysis of dissolved and particulate Sr concentrations indicates Acantharia's dominant role in Sr cycles, with seasonal flux variations, particularly intense in January/February, likely linked to increased productivity and ocean temperatures during that period.

Sampling Sites: Dissolved and particulate Sr samples were collected in the Australian sector of the Southern Ocean during R/V Investigator voyages IN2018_V01 and IN2020_V08. The IN2018_V01 voyage was conducted between 10 January and 22 February 2018, along the SR3 transect (44°S – 66°S, 140°E – 146°E). The IN2020_V08 voyage was carried out between 4 December 2020, and 15 January 2021, with sampling conducted at three primary sites. Samples were collected at three primary sites: the Southern Ocean Time Series (SOTS) site (47°S, 141°E), and two southern sites (SS1 and SS2) located within a polar bloom at approximately 55°S, 138°E, and 58°S, 141°E, respectively. Seasonal surface and deep ocean mooring samples are archived samples collected at the SOTS site from long-term SOTS moorings and measured for Sr from selected years.

Sampling Methodology: Dissolved Sr samples were collected using CTD rosettes at various depths. Particulate Sr samples were obtained using McLane pumps, focusing on subsurface waters to estimate the standing stock of Acantharia. Surface mooring samples were collected using a Remote Access Sampler (RAS-599, McLane Labs) and filtered through a 1mm plastic mesh on the sample inlet. The deep ocean mooring samples were collected from 1000 m sediment traps. The cups were buffered with SrCl2 prior to deployment to prevent the dissolution of Acantharia. After recovery, the cups were separated into &gt;1mm and &lt;1mm fractions. The &gt;1mm fraction was archived in buffered seawater, while the &lt;1mm fraction was dried and homogenized into powders.

Data Analysis: All the samples were digested and/or diluted in 2% HNO3 and measured on the ICP-OES for Sr concentrations. The results were normalized to a salinity of 35. Uncertainty in Sr measurements was assessed based on the average one standard deviation of triplicate measurements across the dataset.
DOI: 10.17632/6yd3stvmpz.1
title: LINF_360029100

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/2gtt93zx5z.2
title: [Dataset] Aspergillus niger enhances the efficiency of sewage sludge biochar as a phosphorus source

description: Experimental dataset associated with the article "Aspergillus niger enhances the efficiency of sewage sludge biochar as a phosphorus source".
DOI: 10.17632/pm4hhgvrrc.1
title: LINF_360029500

description: Gamma-tubulin complex component 3-like protein | GCP3L; Leishmania infantum (strain JPCM5)
DOI: 10.17632/r5k3b2b8zs.1
title: LINF_360028600

description: Proteina similar a Emp24; Leishmania infantum (strain JPCM5)
DOI: 10.17632/m4mbjzr3vt.1
title: LINF_360034800

description: Centrosomal protein POC5-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/6hgs8cj7r6.1
title: LINF_360032900

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/6wm94md3fx.1
title: LINF_360032100

description: Acid phosphatase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/tcm2jwp3hf.1
title: LINF_360032200

description: Putative Nop15; Leishmania infantum (strain JPCM5)
DOI: 10.17632/x3tzxg38wj.2
title: 2D Data Arrangement to Habituate ANN for Depression Levels Measurement

description: This dataset focuses on optimizing input structures for Artificial Neural Networks (ANN) by arranging data in two-dimensional (2D) parameters. The approach involves collecting and organizing a combination of physical parameters (body temperature, heart rate, oxygen saturation, and sleep duration) and psychological parameters (Perceived Stress Scale) from individuals to create 2D matrices. These matrices serve as input for the ANN, which is trained to predict depression levels based on patterns detected in the data. By structuring the data in this manner, the model becomes more adaptive and effective in identifying the severity of depression, leading to improved accuracy in mental health assessments.
DOI: 10.17632/ktkmtj3s4t.1
title: Reaction mechanism of benzylsuccinate synthase - results of modeling and kinetic experiments

description: The dataset collects results of the study on the reaction mechanism catalyzed by benzylsuccinate synthase (BSS) a fumarate-adding enzyme. Fumarate-adding enzymes (FAE) are a subset of the glycyl radical enzyme superfamily involved in anaerobic hydrocarbon degradation. Benzylsuccinate synthase catalyzes the enantiospecific formation of R-benzylsuccinate from toluene and fumarate, initiating anaerobic toluene degradation. In this deposition we collect crucial data from two papers: I) describing the initial step of the reaction i.e. hydrogen atom transfer from cysteine residue in the active site to glycyl radical which transfers radical close to the reagents and ii) description of the whole mechanism with QM:MM methods validated by prediction of kinetic isotope effect and enantioselectivity of the reaction. 

The first part of the data refers to the paper: M. Szaleniec et al., Modeling the Initiation Phase of the Catalytic Cycle in the Glycyl-Radical Enzyme Benzylsuccinate Synthase, The Journal of Physical Chemistry B 2024, 128, 24, 5823-5839 (https://doi.org/10.1021/acs.jpcb.4c01237). The data contains PDB structures of stationary states of the hydrogen atom transfer between Gly and Cys for the substrate and product bound enzyme as well as for the apoenzyme and AMBER parameters used to model BSS enzyme with radical Gly or Cys. 

The second part of the data refers to the preprint of the paper: M. Szaleniec et al., Unravelling the Enantioselective Mechanism of Benzylsuccinate Synthase: Insights into Anaerobic Hydrocarbon Degradation Through Multiscale Modelling and Kinetics, bioRxiv DOI: 10.1101/2024.10.11.617960. The data contains PDB structures of stationary states of the whole pathway (proR) and part of the proS pathway as well as results of kinetic experiments for both papers collected into an enzymeML spreadsheet. The enzymeML data contains results on KIE and HDX. 

Acknowledgements
The authors acknowledge the financial support provided by Deutsche Forschungsgemeinschaft/National Science Center Poland under Beethoven Life grant He2190/13-1 / 2018/31/F/NZ1/01856 as well as Polish high-performance computing infrastructure PLGrid (HPC Center: ACK Cyfronet AGH) for providing computer facilities and support within computational grant no. PLG/2023/016888, PLG/2022/016024 and PLG/2021/015218.
DOI: 10.17632/9hb3yxp2b2.1
title: LDHU3_11.1470

description: ABCA2 | ATP-binding cassette protein subfamily A member 2; Leishmania donovani (HU3 strain)
DOI: 10.17632/jysnghz24v.1
title: visually impaired women and menstrual cup

description: This study aimed to determine whether the MC is a product that can be used by VI women.
DOI: 10.17632/849mm5tsgr.1
title: LDHU3_11.1390

description: Eukaryotic translation termination factor 3; Leishmania donovani (HU3 strain)
DOI: 10.17632/wkmc2swgsx.1
title: LDHU3_11.1430

description: 40S ribosomal protein S15A | uS8; Leishmania donovani (HU3 strain)