cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.282rgj
title: Occurrence Download

description: A dataset listing the 180 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "StateProvince is one of (tolima)",
 "TaxonKey is one of (Anura)"
 ]
 }
 ]
}

 The dataset's 180 records were derived from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035563-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mbgygu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alca monocerata Pallas, 1811",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035568-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3685417_d1.v1
title: Additional file 1: Figure S1. of CCL11 promotes migration and proliferation of mouse neural progenitor cells

description: The time-lapse movie of NPC migration. Images were captured every 15Â minutes for 24Â hours. (A) NPCs did not migrate toward the PBS-injected side. (B) After CCL11 injection, NPCs actively proliferated and migrated toward the CCL11-injected side. (ZIP 144651 kb)
DOI: 10.6084/m9.figshare.c.3685417_d1
title: Additional file 1: Figure S1. of CCL11 promotes migration and proliferation of mouse neural progenitor cells

description: The time-lapse movie of NPC migration. Images were captured every 15Â minutes for 24Â hours. (A) NPCs did not migrate toward the PBS-injected side. (B) After CCL11 injection, NPCs actively proliferated and migrated toward the CCL11-injected side. (ZIP 144651 kb)
DOI: 10.6084/m9.figshare.c.3685249_d12
title: Additional file 3: Table S3. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The upregulated and downregulated GO functions during osteogenic differentiation of BMSCs. (XLS 54 kb)
DOI: 10.6084/m9.figshare.c.3685249_d10.v1
title: Additional file 2: Table S2. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The differentially expressed lncRNAs during osteogenic differentiation of BMSCs. (XLS 185 kb)
DOI: 10.6084/m9.figshare.c.3685249_d10
title: Additional file 2: Table S2. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The differentially expressed lncRNAs during osteogenic differentiation of BMSCs. (XLS 185 kb)
DOI: 10.6084/m9.figshare.c.3685249_d9
title: Additional file 10: Table S8. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The 13 core regulatory genes by CNC during osteogenic differentiation of BMSCs. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3685249_d8
title: Additional file 12: Table S9. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The primer sequences used for qRT-PCR. (XLS 30 kb)
DOI: 10.6084/m9.figshare.c.3685249_d7
title: Additional file 7: Table S7. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The 92 core genes enriched by Signal-net during osteogenic differentiation of BMSCs. (XLS 37 kb)
DOI: 10.6084/m9.figshare.c.3685249_d6.v1
title: Additional file 5: Table S5. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The upregulated and downregulated genes in significant pathways during osteogenic differentiation of BMSCs. (XLS 111 kb)
DOI: 10.6084/m9.figshare.c.3685249_d6
title: Additional file 5: Table S5. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The upregulated and downregulated genes in significant pathways during osteogenic differentiation of BMSCs. (XLS 111 kb)
DOI: 10.15468/dl.hd7gt6
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spisula sachalinensis (Schrenck, 1862)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 106 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035569-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3685249_d1
title: Additional file 6: Table S6. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The significant pathways enriched by Path-net during osteogenic differentiation of BMSCs. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3685249_d1.v1
title: Additional file 6: Table S6. of Differential long noncoding RNA/mRNA expression profiling and functional network analysis during osteogenic differentiation of human bone marrow mesenchymal stem cells

description: The significant pathways enriched by Path-net during osteogenic differentiation of BMSCs. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3685228_d1
title: Additional file 3: of An approach of identifying differential nucleosome regions in multiple samples

description: Data of differential nucleosome regions (DNRs) identified by Dimnp for yeast chromosome 1 in two sets of multiple-cell type comparison. One is for H4WT, H4R3A and H4K20A; the other is H4K5A, H4K20A, H4K91A and H4K16A. (XLS 86Â kb)
DOI: 10.6084/m9.figshare.c.3684349_d6.v1
title: Additional file 5: of Not all predicted CRISPRâ  Cas systems are equal: isolated cas genes and classes of CRISPR like elements

description: A sequence file of false-CRISPRs in the FASTA format. Annotations of the false-CRISPRs are shown in the sequence headers. (TXT 2016 kb)
DOI: 10.6084/m9.figshare.c.3684349_d6
title: Additional file 5: of Not all predicted CRISPRâ  Cas systems are equal: isolated cas genes and classes of CRISPR like elements

description: A sequence file of false-CRISPRs in the FASTA format. Annotations of the false-CRISPRs are shown in the sequence headers. (TXT 2016 kb)
DOI: 10.6084/m9.figshare.c.3684349_d4.v1
title: Additional file 3: of Not all predicted CRISPRâ  Cas systems are equal: isolated cas genes and classes of CRISPR like elements

description: A sequence file of real CRISPR arrays in the FASTA format. (TXT 9447 kb)
DOI: 10.6084/m9.figshare.c.3684349_d4
title: Additional file 3: of Not all predicted CRISPRâ  Cas systems are equal: isolated cas genes and classes of CRISPR like elements

description: A sequence file of real CRISPR arrays in the FASTA format. (TXT 9447 kb)
DOI: 10.6084/m9.figshare.c.3684349_d3
title: Additional file 4: of Not all predicted CRISPRâ  Cas systems are equal: isolated cas genes and classes of CRISPR like elements

description: The repeat sequences of false-CRISPRs in the FASTA format. (TXT 148 kb)
DOI: 10.6084/m9.figshare.c.3684349_d3.v1
title: Additional file 4: of Not all predicted CRISPRâ  Cas systems are equal: isolated cas genes and classes of CRISPR like elements

description: The repeat sequences of false-CRISPRs in the FASTA format. (TXT 148 kb)
DOI: 10.6084/m9.figshare.c.3684328_d4.v1
title: Additional file 3: Table S9. of Analysis of small RNAs revealed differential expressions during pollen and embryo sac development in autotetraploid rice

description: Differentially expressed miRNAs (DEM) between diploid and autotetraploid during pollen development. Table S10. Differentially expressed miRNAs (DEM) between diploid and autotetraploid rice during embryo sac development. Table S11. Comparison of the differentially expressed miRNAs (DEM) between the pollen and embryo sac development in autotetraploid rice. Table S12. Differentially expressed miRNAs between embryo sac and pollen development in autotetraploid rice. Table S13. DEM-P (pollen-enriched miRNAs) and DEM-ES (embryo sac-enriched miRNAs) in 02428-4x. Table S14. Overall information about the predicted targets of detected miRNAs by Targetfinder. Table S15. Comparison of targets predicted by differentially expressed miRNAs with the previous studies on MA (meiosis). Table S16. Comparison of targets predicted by differentially expressed miRNAs with the previous studies on MM (megasporocyte meiosis stage). (XLSX 417Â kb)
DOI: 10.6084/m9.figshare.c.3684328_d4
title: Additional file 3: Table S9. of Analysis of small RNAs revealed differential expressions during pollen and embryo sac development in autotetraploid rice

description: Differentially expressed miRNAs (DEM) between diploid and autotetraploid during pollen development. Table S10. Differentially expressed miRNAs (DEM) between diploid and autotetraploid rice during embryo sac development. Table S11. Comparison of the differentially expressed miRNAs (DEM) between the pollen and embryo sac development in autotetraploid rice. Table S12. Differentially expressed miRNAs between embryo sac and pollen development in autotetraploid rice. Table S13. DEM-P (pollen-enriched miRNAs) and DEM-ES (embryo sac-enriched miRNAs) in 02428-4x. Table S14. Overall information about the predicted targets of detected miRNAs by Targetfinder. Table S15. Comparison of targets predicted by differentially expressed miRNAs with the previous studies on MA (meiosis). Table S16. Comparison of targets predicted by differentially expressed miRNAs with the previous studies on MM (megasporocyte meiosis stage). (XLSX 417Â kb)
DOI: 10.6084/m9.figshare.c.3684328_d3.v1
title: Additional file 4: Table S17. of Analysis of small RNAs revealed differential expressions during pollen and embryo sac development in autotetraploid rice

description: Protein-protein interaction of meiosis-related genes with the targets predicted by the DEM associated with meiosis. Table S18. 21 nt-phasiRNAs triggered by the miR2118. Table S19. 24 nt-phasiRNAs triggered by the miR2275. Table S20. Overview of 24 nt TEs-siRNAs during pollen and embryo sac development of 02428-4x and 02428-2x. Table S21. Distribution of 24 nt TEs-siRNAs in autotetraploid and diploid rice. Table S22. Differentially expressed 24 nt TEs-siRNAs during pollen and embryo sac development of autotetraploid rice. Table S23. Anther length during pollen development stages in autotetraploid and diploid rice. Table S24. The stem–loop RT primers used in the present study. (XLSX 1012 kb)
DOI: 10.6084/m9.figshare.c.3684328_d3
title: Additional file 4: Table S17. of Analysis of small RNAs revealed differential expressions during pollen and embryo sac development in autotetraploid rice

description: Protein-protein interaction of meiosis-related genes with the targets predicted by the DEM associated with meiosis. Table S18. 21 nt-phasiRNAs triggered by the miR2118. Table S19. 24 nt-phasiRNAs triggered by the miR2275. Table S20. Overview of 24 nt TEs-siRNAs during pollen and embryo sac development of 02428-4x and 02428-2x. Table S21. Distribution of 24 nt TEs-siRNAs in autotetraploid and diploid rice. Table S22. Differentially expressed 24 nt TEs-siRNAs during pollen and embryo sac development of autotetraploid rice. Table S23. Anther length during pollen development stages in autotetraploid and diploid rice. Table S24. The stem–loop RT primers used in the present study. (XLSX 1012 kb)
DOI: 10.6084/m9.figshare.c.3684292_d2.v1
title: Additional file 8: Table S8. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: aJAS & Intronic intron-1st dataset. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3684292_d2
title: Additional file 8: Table S8. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: aJAS & Intronic intron-1st dataset. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3684292_d1
title: Additional file 9: Table S9. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: aJAS & Intronic intron-2nd dataset. (XLSX 74 kb)
DOI: 10.6084/m9.figshare.c.3684292_d1.v1
title: Additional file 9: Table S9. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: aJAS & Intronic intron-2nd dataset. (XLSX 74 kb)
DOI: 10.6084/m9.figshare.c.3684283_d1
title: Additional file 1: of Metabolomic analysis of pathways related to rice grain chalkiness by a notched-belly mutant with high occurrence of white-belly grains

description: List of all metabolites identified and quantified by UPLC/MS/MS and GC/MS. (XLS 1325 kb)
DOI: 10.6084/m9.figshare.c.3684283_d1.v1
title: Additional file 1: of Metabolomic analysis of pathways related to rice grain chalkiness by a notched-belly mutant with high occurrence of white-belly grains

description: List of all metabolites identified and quantified by UPLC/MS/MS and GC/MS. (XLS 1325 kb)
DOI: 10.6084/m9.figshare.c.3684262_d1.v1
title: Additional file 1: Table S1. of Integration of VDR genome wide binding and GWAS genetic variation data reveals co-occurrence of VDR and NF-κB binding that is linked to immune phenotypes

description: Showing number of VDR peaks and number of Lead and LD SNPs overlapping with VDR peaks in different cell line models. Number of peaks for individual VDR ChIP-seq data and the number of Lead SNPs along with associated LD SNPs which fall under VDR peaks for each data set is shown here. Table S2. Study design, analytical methods and results. Summary table describing different stages of the analyses including the principal methods (computational approaches, databases and webtools) and key finding from each stage. Table S3. List of 574 SNPs (GWAS + LD SNPs) under VDR peaks. Table S4. List of 42 SNPs showing significant enrichment for associated traits. Table S5. RegulomeDB scores for 42 significant trait associated SNPs. Table S6. Summary of HaploReg results for 42 trait associated SNPs. Table S7. HaploReg summary table of enrichment analysis of enhancers and DNase sensitive regions associated with 42 trait associated SNPs. (XLSX 94 kb)
DOI: 10.6084/m9.figshare.c.3684262_d1
title: Additional file 1: Table S1. of Integration of VDR genome wide binding and GWAS genetic variation data reveals co-occurrence of VDR and NF-κB binding that is linked to immune phenotypes

description: Showing number of VDR peaks and number of Lead and LD SNPs overlapping with VDR peaks in different cell line models. Number of peaks for individual VDR ChIP-seq data and the number of Lead SNPs along with associated LD SNPs which fall under VDR peaks for each data set is shown here. Table S2. Study design, analytical methods and results. Summary table describing different stages of the analyses including the principal methods (computational approaches, databases and webtools) and key finding from each stage. Table S3. List of 574 SNPs (GWAS + LD SNPs) under VDR peaks. Table S4. List of 42 SNPs showing significant enrichment for associated traits. Table S5. RegulomeDB scores for 42 significant trait associated SNPs. Table S6. Summary of HaploReg results for 42 trait associated SNPs. Table S7. HaploReg summary table of enrichment analysis of enhancers and DNase sensitive regions associated with 42 trait associated SNPs. (XLSX 94 kb)
DOI: 10.15468/dl.ppw46h
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudocardium sachalinense",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035570-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3683077_d5
title: Additional file 1: of Sex and age differences in the expression of liver microRNAs during the life span of F344 rats

description: 212 differentially expressed miRNAs by age for each sex. The age contrast with differential expression is given along with fold-ratio, ANOVA FDR, degrees of freedom (df), ANOVA F statistic, and p values for both males and females. (XLSX 232Â kb)
DOI: 10.6084/m9.figshare.c.3683077_d4
title: Additional file 4: of Sex and age differences in the expression of liver microRNAs during the life span of F344 rats

description: 38 miRNAs with 2-week-old-specific expression. Identification of 2-week-old-specific miRNAs, along with expression level in each rat liver sample, k-means cluster number (from Fig.Â 2), differential expression by age and/or sex, and chromosome mapping position. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.c.3683077_d4.v1
title: Additional file 4: of Sex and age differences in the expression of liver microRNAs during the life span of F344 rats

description: 38 miRNAs with 2-week-old-specific expression. Identification of 2-week-old-specific miRNAs, along with expression level in each rat liver sample, k-means cluster number (from Fig.Â 2), differential expression by age and/or sex, and chromosome mapping position. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.c.3683077_d3.v1
title: Additional file 5: of Sex and age differences in the expression of liver microRNAs during the life span of F344 rats

description: 43 significantly differentially expressed miRNAs between 52, 78, and 104 weeks of age males and females compared to 5–21 weeks of age baseline group. Presence or absence of histopathological findings is given with the relative fold change in expression of the miRNAs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3683077_d3
title: Additional file 5: of Sex and age differences in the expression of liver microRNAs during the life span of F344 rats

description: 43 significantly differentially expressed miRNAs between 52, 78, and 104 weeks of age males and females compared to 5–21 weeks of age baseline group. Presence or absence of histopathological findings is given with the relative fold change in expression of the miRNAs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3681892_d2
title: Additional file 3: of Longitudinal analysis of treatment-induced genomic alterations in gliomas

description: Supplementary table. Somatic mutations in three tumors of the presented case. (XLSX 798 kb)
DOI: 10.6084/m9.figshare.c.3681892_d2.v1
title: Additional file 3: of Longitudinal analysis of treatment-induced genomic alterations in gliomas

description: Supplementary table. Somatic mutations in three tumors of the presented case. (XLSX 798 kb)
DOI: 10.15468/dl.37763a
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spisula sibyllae (Valenciennes, 1858)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035571-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3680530_d3
title: Additional file 3: Table S2. of Transcriptome analysis of Cucumis sativus infected by Cucurbit chlorotic yellows virus

description: List of DEGs classified as molecular function genes. (XLS 4Â kb)
DOI: 10.6084/m9.figshare.c.3680497_d7.v1
title: Additional file 7: Table S4. of A feature selection method based on multiple kernel learning with expression profiles of different types

description: The results of union stability. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3680497_d7
title: Additional file 7: Table S4. of A feature selection method based on multiple kernel learning with expression profiles of different types

description: The results of union stability. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3680497_d6
title: Additional file 1: Table S1. of A feature selection method based on multiple kernel learning with expression profiles of different types

description: The results of max effective on mRNA microarray, mRNASeq and miRNASeq datasets. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3680497_d6.v1
title: Additional file 1: Table S1. of A feature selection method based on multiple kernel learning with expression profiles of different types

description: The results of max effective on mRNA microarray, mRNASeq and miRNASeq datasets. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3680497_d4
title: Additional file 5: Table S2. of A feature selection method based on multiple kernel learning with expression profiles of different types

description: The results of mean and max effective by different kernel. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3680497_d4.v1
title: Additional file 5: Table S2. of A feature selection method based on multiple kernel learning with expression profiles of different types

description: The results of mean and max effective by different kernel. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3680497_d2.v1
title: Additional file 6: Table S3. of A feature selection method based on multiple kernel learning with expression profiles of different types

description: The results of mean and max effective by using step one. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3680497_d2
title: Additional file 6: Table S3. of A feature selection method based on multiple kernel learning with expression profiles of different types

description: The results of mean and max effective by using step one. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3679036_d11
title: Additional file 7: Table S4. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Segmental duplication events during evolution of MIR166 family genes in soybean. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3679054_d1
title: Additional file 3: of Gut metagenomes of type 2 diabetic patients have characteristic single-nucleotide polymorphism distribution in Bacteroides coprocola

description: Phylogenetic trees of the 63 genes, except the top two, of the 65 genes with the most differentiated SNP distribution. Each tree is in a separate JPG file named by the GenBank accession of the corresponding gene. (RAR 13817Â kb)
DOI: 10.6084/m9.figshare.c.3679054_d1.v1
title: Additional file 3: of Gut metagenomes of type 2 diabetic patients have characteristic single-nucleotide polymorphism distribution in Bacteroides coprocola

description: Phylogenetic trees of the 63 genes, except the top two, of the 65 genes with the most differentiated SNP distribution. Each tree is in a separate JPG file named by the GenBank accession of the corresponding gene. (RAR 13817Â kb)
DOI: 10.6084/m9.figshare.c.3679048_d1
title: Additional file 3: Table S2.﻿ of UroMark—a urinary biomarker assay for the detection of bladder cancer

description: RainDance barcode primer sequences. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3679048_d1.v1
title: Additional file 3: Table S2. of UroMark—a urinary biomarker assay for the detection of bladder cancer

description: RainDance barcode primer sequences. (XLSX 12 kb)