cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.eqmnlh
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cavia aperea Erxleben, 1777",
 "Country is Brazil"
 ]
}

 The dataset includes 80 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004755-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5fxcyx
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Ruellia hypericoides (Nees) Lindau"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163575-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pq6nxe
title: Occurrence Download

description: A dataset containing 233262 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypericum perforatum L."
 ]
}

 The dataset includes 233262 records from 701 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004755-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/x83zcrfz7t
title: A lipid flippase shapes the ciliary membrane and is essential for ciliogenesis

description: A lipid flippase shapes the ciliary membrane and is essential for ciliogenesis
DOI: 10.17632/x83zcrfz7t.1
title: A lipid flippase shapes the ciliary membrane and is essential for ciliogenesis

description: A lipid flippase shapes the ciliary membrane and is essential for ciliogenesis
DOI: 10.17632/ynfzpyjs7c
title: Compositional Data of NCO Cumulates

description: Compositional Data of NCO Cumulates
DOI: 10.17632/ynfzpyjs7c.1
title: Compositional Data of NCO Cumulates

description: Compositional Data of NCO Cumulates
DOI: 10.17632/jnbwxcpz7w
title: Long-term Copper-Salt Stress-Induced Metabolic Modulation in Bruguiera gymnorhiza and Kandelia obovata Drives Species-Specific Rhizobacterial Recruitment for Improved Tolerance

description: This dataset supports the findings of the study "Long-term Copper-Salt Stress-Induced Metabolic Modulation in Bruguiera gymnorhiza and Kandelia obovata Drives Species-Specific Rhizobacterial Recruitment for Improved Tolerance." 

The dataset consists of five (5) Excel files labeled: Excel Sheet S1_Up_Downregulated DEMs_Bgymnorhiza; Excel Sheet S2_Up_Downregulated DEMs_Kobovata; Excel Sheet S3_Unique and similar DEMs; Excel Sheet S4_Enriched_Pathways_Bgymnorhiza; and Excel Sheet S5_Enriched_Pathways_Kobovata.

The Excel Sheets S1 and S2 provide the complete metabolic profile of the rhizospheres and roots of two mangroves; Bruguiera gymnorhiza and Kandelia obovata, under single copper, salt, and dual copper-salt stress over a 4-year experimental period. The data shows both the upregulated and downregulated metabolites. After sorting the data for similarities and differences between treatments, Excel Sheet S3 summarizes the profiles of metabolites that were uniquely or commonly altered in the rhizospheres and roots of both species. Finally, Excel Sheets S4 and S5 provide the complete list of altered metabolic pathways and their associated metabolites under different treatment conditions. The results presented in the dataset support the species-specific metabolic modulation for stress tolerance via the recruitment of novel, diverse, and tolerant microorganisms for ecosystem resilience.
DOI: 10.17632/jnbwxcpz7w.1
title: Long-term Copper-Salt Stress-Induced Metabolic Modulation in Bruguiera gymnorhiza and Kandelia obovata Drives Species-Specific Rhizobacterial Recruitment for Improved Tolerance

description: This dataset supports the findings of the study "Long-term Copper-Salt Stress-Induced Metabolic Modulation in Bruguiera gymnorhiza and Kandelia obovata Drives Species-Specific Rhizobacterial Recruitment for Improved Tolerance." 

The dataset consists of five (5) Excel files labeled: Excel Sheet S1_Up_Downregulated DEMs_Bgymnorhiza; Excel Sheet S2_Up_Downregulated DEMs_Kobovata; Excel Sheet S3_Unique and similar DEMs; Excel Sheet S4_Enriched_Pathways_Bgymnorhiza; and Excel Sheet S5_Enriched_Pathways_Kobovata.

The Excel Sheets S1 and S2 provide the complete metabolic profile of the rhizospheres and roots of two mangroves; Bruguiera gymnorhiza and Kandelia obovata, under single copper, salt, and dual copper-salt stress over a 4-year experimental period. The data shows both the upregulated and downregulated metabolites. After sorting the data for similarities and differences between treatments, Excel Sheet S3 summarizes the profiles of metabolites that were uniquely or commonly altered in the rhizospheres and roots of both species. Finally, Excel Sheets S4 and S5 provide the complete list of altered metabolic pathways and their associated metabolites under different treatment conditions. The results presented in the dataset support the species-specific metabolic modulation for stress tolerance via the recruitment of novel, diverse, and tolerant microorganisms for ecosystem resilience.
DOI: 10.5281/zenodo.17215166
title: Dataset for PRP trial in CIPN

description: This dataset contains anonymized clinical data from a randomized controlled trial evaluating the effect of perineural platelet-rich plasma (PRP) injection on pain and functional outcomes in patients with chemotherapy-induced peripheral neuropathy (CIPN). Sixty patients were enrolled and randomized into two groups: PRP injection group and placebo (saline) group. The dataset includes pain scores (VAS), functional outcomes (FACT/GOG-Ntx), and patient-reported improvement (Likert scale) assessed at baseline, 15 days, 1 month, 2 months, and 3 months. No personal identifiers are included
DOI: 10.5281/zenodo.17215167
title: Dataset for PRP trial in CIPN

description: This dataset contains anonymized clinical data from a randomized controlled trial evaluating the effect of perineural platelet-rich plasma (PRP) injection on pain and functional outcomes in patients with chemotherapy-induced peripheral neuropathy (CIPN). Sixty patients were enrolled and randomized into two groups: PRP injection group and placebo (saline) group. The dataset includes pain scores (VAS), functional outcomes (FACT/GOG-Ntx), and patient-reported improvement (Likert scale) assessed at baseline, 15 days, 1 month, 2 months, and 3 months. No personal identifiers are included
DOI: 10.17632/kd9y5z7hgy.1
title: Volumetric Behaviour Analysis (VBA) of Hong Kong Public Housing Flats - Interview PHHA6T
DOI: 10.15468/dl.zer3gd
title: Occurrence Download

description: A dataset containing 2944 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zosterops everetti",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2944 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029706-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/xsty8c9hd9
title: Volumetric Behaviour Analysis (VBA) of Hong Kong Public Housing Flats - 3D Volumetric Models - Case 1PHTR1
DOI: 10.15468/dl.af2jdw
title: Occurrence Download

description: A dataset containing 3502 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leopardus guigna"
 ]
}

 The dataset includes 3502 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029707-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/xsty8c9hd9.1
title: Volumetric Behaviour Analysis (VBA) of Hong Kong Public Housing Flats - 3D Volumetric Models - Case 1PHTR1
DOI: 10.6084/m9.figshare.25218870
title: Sequence-based prediction of the effects of histones H1 post-translational modifications: impact on the features related to the function

description: Post-translational modifications modulate histones H1 activity but their impact on proteins features was not studied so far. Therefore, this work was intended to answer how the most common modifications, i.e. acetylation, methylation, phosphorylation and ubiquitination, can influence on histones H1 to alter their physicochemical and molecular properties. Investigations were done with the use of sequence-based predictors trained on various protein features. Because a full set of histones H1 modifications is not included in the databases of histone proteins, the survey was performed on the human, animals, plants, fungi and protist sequences selected from UniProtKB/Swiss-Prot database. Quantitative proportions of modifications were similar between the groups of organisms (CV = 0.11) but different within the group (<i>p</i> &lt; 0.05). The effects of modifications were evaluated with the use of mutated sequences obtained through the substitution of modified residue of Lys, Ser and Thr by a neutral residue of the Ala. An advantage of deleterious mutations at the sites of acetylation, methylation and ubiquitination over the sites of phosphorylation (<i>p</i> &lt; 0.05) indicate that this modification have more redundant character. Modifications evoke an increase of protein solubility and stability as well as acceleration of folding kinetics and a weaken of binding affinity. Besides, they also maintain a higher extent of intrinsic structural disorder. The obtained results prove that modifications should be perceived as relevant factors influencing physicochemical features determining molecular properties. Thus, histones H1 functioning is strictly correlated with the status of modifications.
DOI: 10.6084/m9.figshare.25218870.v1
title: Sequence-based prediction of the effects of histones H1 post-translational modifications: impact on the features related to the function

description: Post-translational modifications modulate histones H1 activity but their impact on proteins features was not studied so far. Therefore, this work was intended to answer how the most common modifications, i.e. acetylation, methylation, phosphorylation and ubiquitination, can influence on histones H1 to alter their physicochemical and molecular properties. Investigations were done with the use of sequence-based predictors trained on various protein features. Because a full set of histones H1 modifications is not included in the databases of histone proteins, the survey was performed on the human, animals, plants, fungi and protist sequences selected from UniProtKB/Swiss-Prot database. Quantitative proportions of modifications were similar between the groups of organisms (CV = 0.11) but different within the group (<i>p</i> &lt; 0.05). The effects of modifications were evaluated with the use of mutated sequences obtained through the substitution of modified residue of Lys, Ser and Thr by a neutral residue of the Ala. An advantage of deleterious mutations at the sites of acetylation, methylation and ubiquitination over the sites of phosphorylation (<i>p</i> &lt; 0.05) indicate that this modification have more redundant character. Modifications evoke an increase of protein solubility and stability as well as acceleration of folding kinetics and a weaken of binding affinity. Besides, they also maintain a higher extent of intrinsic structural disorder. The obtained results prove that modifications should be perceived as relevant factors influencing physicochemical features determining molecular properties. Thus, histones H1 functioning is strictly correlated with the status of modifications.
DOI: 10.5281/zenodo.17096770
title: Wood density of Andean native species through two methods (Dataset)

description: Obtaining of wood density of Andean native species through two methodologies. Empirical method and water displacement. Were colected 220 core samples of wood of 14 species located in the western Andes mountain range. Two sites on the western slope (Angas and Miguir) and two on the eastern slope (Llaviucu and Zhurucay). 

The species name are listed next:

Alnus acuminata

Brugmansia sanguinea

Escallonia myrtilloides

Hedyosmum luteynii

Morella pubescens

Myrcianthes rhopaloides

Ocotea heterochroma

Oreocallis grandiflora

Polylepis reticulata

Polylepis incana

Polylepis lanuginosa

Polylepis weberbaueri

Vallea stipularis

Weinmannia fagaroides
DOI: 10.6084/m9.figshare.25304191
title: Identification of the odorant binding proteins of Western Flower Thrips (<i>Frankliniella occidentalis</i>), characterization and binding analysis of <i>FoccOBP3</i> with molecular modelling, molecular dynamics simulations and a confirmatory field trial

description: Olfactory systems are indispensable for insects as they, including Western Flower Thrips (<i>Frankliniella occidentalis</i>), use olfactory cues for ovipositing and feeding. <i>F. occidentalis</i> use odorant binding proteins (OBPs) to transport semiochemicals to odorant receptors to induce a behavioural response from the sensillum lymph of the insect’s antennae. This study identifies four OBPs of <i>F. occidentalis</i> and analyses their expression at three stages of growth: larvae, adult males and adult females. Further, it investigates the presence of conserved motifs and their phylogenetic relationship to other insect species. Moreover, <i>FoccOBP3</i> was <i>in silico</i> characterized to analyse its structure along with molecular docking and molecular dynamics simulations to understand its binding with semiochemicals of <i>F. occidentalis</i>. Molecular docking revealed the interactions of methyl isonicotinate, p-anisaldehyde and (S)-(-)-verbenone with <i>FoccOBP3</i>. Moreover, molecular dynamics simulations showed bonding stability of these ligands with <i>FoccOBP3,</i> and field trials validated that Lurem TR (commercial product) and p-anisaldehyde had greater attraction as compared to (S)-(-)-verbenone, given the compound’s binding with <i>FoccOBP3</i>. The current study helps in understanding the tertiary structure and interaction of <i>FoccOBP3</i> with lures using computational and field data and will help in the identification of novel lures of insects in the future, given the importance of binding with OBPs.
DOI: 10.6084/m9.figshare.25304191.v1
title: Identification of the odorant binding proteins of Western Flower Thrips (<i>Frankliniella occidentalis</i>), characterization and binding analysis of <i>FoccOBP3</i> with molecular modelling, molecular dynamics simulations and a confirmatory field trial

description: Olfactory systems are indispensable for insects as they, including Western Flower Thrips (<i>Frankliniella occidentalis</i>), use olfactory cues for ovipositing and feeding. <i>F. occidentalis</i> use odorant binding proteins (OBPs) to transport semiochemicals to odorant receptors to induce a behavioural response from the sensillum lymph of the insect’s antennae. This study identifies four OBPs of <i>F. occidentalis</i> and analyses their expression at three stages of growth: larvae, adult males and adult females. Further, it investigates the presence of conserved motifs and their phylogenetic relationship to other insect species. Moreover, <i>FoccOBP3</i> was <i>in silico</i> characterized to analyse its structure along with molecular docking and molecular dynamics simulations to understand its binding with semiochemicals of <i>F. occidentalis</i>. Molecular docking revealed the interactions of methyl isonicotinate, p-anisaldehyde and (S)-(-)-verbenone with <i>FoccOBP3</i>. Moreover, molecular dynamics simulations showed bonding stability of these ligands with <i>FoccOBP3,</i> and field trials validated that Lurem TR (commercial product) and p-anisaldehyde had greater attraction as compared to (S)-(-)-verbenone, given the compound’s binding with <i>FoccOBP3</i>. The current study helps in understanding the tertiary structure and interaction of <i>FoccOBP3</i> with lures using computational and field data and will help in the identification of novel lures of insects in the future, given the importance of binding with OBPs.
DOI: 10.15468/dl.4f85vk
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Solanum polygamum"
 ]
}

 The dataset includes 49 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029708-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.euuvg5
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corydalis solida",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 308 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029709-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/3ytzyj2xx6
title: Spatial spillover effect of green credit on carbon emission intensity in China: The role of high-quality productive forces

description: This is a replication package of the paper "Spatial spillover effect of green credit on carbon emission intensity in China: The role of high-quality productive forces" submitted to Economic Modelling.
DOI: 10.17632/3ytzyj2xx6.1
title: Spatial spillover effect of green credit on carbon emission intensity in China: The role of high-quality productive forces

description: This is a replication package of the paper "Spatial spillover effect of green credit on carbon emission intensity in China: The role of high-quality productive forces" submitted to Economic Modelling.
DOI: 10.6084/m9.figshare.25295959.v2
title: A multi-faceted approach to unravel coding and non-coding gene fusions and target chimeric proteins in ataxia

description: Ataxia represents a heterogeneous group of neurodegenerative disorders characterized by a loss of balance and coordination, often resulting from mutations in genes vital for cerebellar function and maintenance. Recent advances in genomics have identified gene fusion events as critical contributors to various cancers and neurodegenerative diseases. However, their role in ataxia pathogenesis remains largely unexplored. Our study Hdelved into this possibility by analyzing RNA sequencing data from 1443 diverse samples, including cell and mouse models, patient samples, and healthy controls. We identified 7067 novel gene fusions, potentially pivotal in disease onset. These fusions, notably in-frame, could produce chimeric proteins, disrupt gene regulation, or introduce new functions. We observed conservation of specific amino acids at fusion breakpoints and identified potential aggregate formations in fusion proteins, known to contribute to ataxia. Through AI-based protein structure prediction, we identified topological changes in three high-confidence fusion proteins—TEN1-ACOX1, PEX14-NMNAT1, and ITPR1-GRID2—which could potentially alter their functions. Subsequent virtual drug screening identified several molecules and peptides with high-affinity binding to fusion sites. Molecular dynamics simulations confirmed the stability of these protein-ligand complexes at fusion breakpoints. Additionally, we explored the role of non-coding RNA fusions as miRNA sponges. One such fusion, <i>RP11-547P4-FLJ33910</i>, showed strong interaction with hsa-miR-504-5p, potentially acting as its sponge. This interaction correlated with the upregulation of hsa-miR-504-5p target genes, some previously linked to ataxia. In conclusion, our study unveils new aspects of gene fusions in ataxia, suggesting their significant role in pathogenesis and opening avenues for targeted therapeutic interventions.
DOI: 10.6084/m9.figshare.25295959
title: A multi-faceted approach to unravel coding and non-coding gene fusions and target chimeric proteins in ataxia

description: Ataxia represents a heterogeneous group of neurodegenerative disorders characterized by a loss of balance and coordination, often resulting from mutations in genes vital for cerebellar function and maintenance. Recent advances in genomics have identified gene fusion events as critical contributors to various cancers and neurodegenerative diseases. However, their role in ataxia pathogenesis remains largely unexplored. Our study Hdelved into this possibility by analyzing RNA sequencing data from 1443 diverse samples, including cell and mouse models, patient samples, and healthy controls. We identified 7067 novel gene fusions, potentially pivotal in disease onset. These fusions, notably in-frame, could produce chimeric proteins, disrupt gene regulation, or introduce new functions. We observed conservation of specific amino acids at fusion breakpoints and identified potential aggregate formations in fusion proteins, known to contribute to ataxia. Through AI-based protein structure prediction, we identified topological changes in three high-confidence fusion proteins—TEN1-ACOX1, PEX14-NMNAT1, and ITPR1-GRID2—which could potentially alter their functions. Subsequent virtual drug screening identified several molecules and peptides with high-affinity binding to fusion sites. Molecular dynamics simulations confirmed the stability of these protein-ligand complexes at fusion breakpoints. Additionally, we explored the role of non-coding RNA fusions as miRNA sponges. One such fusion, <i>RP11-547P4-FLJ33910</i>, showed strong interaction with hsa-miR-504-5p, potentially acting as its sponge. This interaction correlated with the upregulation of hsa-miR-504-5p target genes, some previously linked to ataxia. In conclusion, our study unveils new aspects of gene fusions in ataxia, suggesting their significant role in pathogenesis and opening avenues for targeted therapeutic interventions.