cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6817466
title: Proximate Chemical Analyses for BSFF, CHCF, NPK151515, Soil, and Post-harvest Soils - ASD_INRAE 2022

description: Proximate chemical analyses for all tested fertilizers (BSFF, CHCF, and NPK151515), the top-soil as the potting medium gathered from Universiti Sains Malaysia (USM) Plant House L14 Building, and all the post-harvest soils after the implementations of all fertilizers (BSFF, CHCF, and NPK151515), including Control Treatment/No Fertilizer application.
DOI: 10.5281/zenodo.6817465
title: Proximate Chemical Analyses for BSFF, CHCF, NPK151515, Soil, and Post-harvest Soils - ASD_INRAE 2022

description: Proximate chemical analyses for all tested fertilizers (BSFF, CHCF, and NPK151515), the top-soil as the potting medium gathered from Universiti Sains Malaysia (USM) Plant House L14 Building, and all the post-harvest soils after the implementations of all fertilizers (BSFF, CHCF, and NPK151515), including Control Treatment/No Fertilizer application.
DOI: 10.5281/zenodo.6334309
title: Detecting TAD-like domains from RNA-associated interactions

description: The example data comprises six files. One is the RNA-chromatin contact map of chr22 constructed from iMARGI HEK dataset (iMARGI_chr22_RAI_matrix_100kb.txt). For Hi-C data, we collect the contact map of chr22 from the Hi-C HEK293T dataset (HEK293T_chr22_100KR_matrix.txt) as well as the detected TADs result (HEK293T_chr22_100KR_matrix.txt.multi2D_AllH2_sparse.tsv). To evaluate the epigenetic characteristic enrichment of inferred TAD-like domains, we download the CTCF TF ChIP-seq peaks (CTCF_ENCFF206AQV.bed), the result of fold change over control of H3K27me3 (H3K27me3_hg38_GSM3907592.bedgraph) and H3K36me3 (H3K36me3_hg38_ENCSR910LIE.bedgraph). The software SuperTLD (https://github.com/deepomicslab/SuperTLD) can directly take the data as input. Usage: uncompress the example_data.zip into the directory of ./data
DOI: 10.5281/zenodo.6817508
title: Crop Diversification Effects on Soil Aggregation and Aggregate-Associated Carbon and Nitrogen in Short-Term Rainfed Olive Groves under SemiaridMediterranean Conditions

description: Soil particle aggregation and their associated carbon (C) and nitrogen (N) content can<br> provide valuable diagnostic indicators of changes in soil properties in response to the implementation<br> of different agricultural management practices. In this sense, there is limited knowledge regarding the<br> impact of intercropping on soil organic carbon (SOC) and total nitrogen (TN) pools in aggregates. This<br> study aimed to evaluate the short-term effect (4 years) of three crop diversifications in rainfed olive<br> orchards on soil aggregation, SOC and TN concentration and SOC stocks (SOC-S) under semi-arid<br> Mediterranean conditions. Olive orchards were diversified with Crocus sativus (D-S), Vicia sativa and<br> Avena sativa in rotation (D-O) and Lavandula x intermedia (D-L) and compared with monocropping<br> system (CT). Soil samples were collected at two depths (0–10 and 10–30 cm) and analysed for soil<br> aggregate mass, SOC and TN content in aggregate-size fractions obtained by the wet-sieving method.<br> Changes caused by crop diversifications on SOC-S were also determined. Overall, after 4 years,<br> a reduction in aggregation values was observed. However, D-S increased the macroaggregates<br> (&gt;250 m) percentage, Mean Weigh Diameter values, and Geometric Mean Value in the 0–10 cm.<br> Across treatments, aggregate-associated C in 0–10 cm was higher in the D-S treatment, while in<br> the 10–30 cm soil layer, the greatest values were found in CT. Regarding the SOC-S, after 4 years,<br> significant losses were recorded under CT management in 0–10 cm (􀀀1.21 Mg ha􀀀1) and 10–30 cm<br> (􀀀0.84 Mg ha􀀀1), while D-O and D-L showed similar values to those obtained at the beginning of the<br> study. The highest increases in SOC-S were found in D-S, with an increase of 5.88% in the 0–10 cm<br> and 14.47% in the 10–30 cm. Our results showed the high potential of the diversified cropping system<br> to increase soil stability and SOC sequestration.
DOI: 10.5281/zenodo.6817507
title: Crop Diversification Effects on Soil Aggregation and Aggregate-Associated Carbon and Nitrogen in Short-Term Rainfed Olive Groves under SemiaridMediterranean Conditions

description: Soil particle aggregation and their associated carbon (C) and nitrogen (N) content can<br> provide valuable diagnostic indicators of changes in soil properties in response to the implementation<br> of different agricultural management practices. In this sense, there is limited knowledge regarding the<br> impact of intercropping on soil organic carbon (SOC) and total nitrogen (TN) pools in aggregates. This<br> study aimed to evaluate the short-term effect (4 years) of three crop diversifications in rainfed olive<br> orchards on soil aggregation, SOC and TN concentration and SOC stocks (SOC-S) under semi-arid<br> Mediterranean conditions. Olive orchards were diversified with Crocus sativus (D-S), Vicia sativa and<br> Avena sativa in rotation (D-O) and Lavandula x intermedia (D-L) and compared with monocropping<br> system (CT). Soil samples were collected at two depths (0–10 and 10–30 cm) and analysed for soil<br> aggregate mass, SOC and TN content in aggregate-size fractions obtained by the wet-sieving method.<br> Changes caused by crop diversifications on SOC-S were also determined. Overall, after 4 years,<br> a reduction in aggregation values was observed. However, D-S increased the macroaggregates<br> (&gt;250 m) percentage, Mean Weigh Diameter values, and Geometric Mean Value in the 0–10 cm.<br> Across treatments, aggregate-associated C in 0–10 cm was higher in the D-S treatment, while in<br> the 10–30 cm soil layer, the greatest values were found in CT. Regarding the SOC-S, after 4 years,<br> significant losses were recorded under CT management in 0–10 cm (􀀀1.21 Mg ha􀀀1) and 10–30 cm<br> (􀀀0.84 Mg ha􀀀1), while D-O and D-L showed similar values to those obtained at the beginning of the<br> study. The highest increases in SOC-S were found in D-S, with an increase of 5.88% in the 0–10 cm<br> and 14.47% in the 10–30 cm. Our results showed the high potential of the diversified cropping system<br> to increase soil stability and SOC sequestration.
DOI: 10.25405/data.ncl.19620588
title: Windowed Apple Watch Sleep Dataset

description: This dataset is used for replicating the experiments mentioned in Git repository: https://github.com/bzhai/Ubi-SleepNet
DOI: 10.5281/zenodo.6817517
title: Detecting TAD-like domains from RNA-associated interactions

description: The example data comprises six files. One is the RNA-chromatin contact map of chr22 constructed from iMARGI HEK dataset (iMARGI_chr22_RAI_matrix_100kb.txt). For Hi-C data, we collect the contact map of chr22 from the Hi-C HEK293T dataset (HEK293T_chr22_100KR_matrix.txt) as well as the detected TADs result (HEK293T_chr22_100KR_matrix.txt.multi2D_AllH2_sparse.tsv). To evaluate the epigenetic characteristic enrichment of inferred TAD-like domains, we download the CTCF TF ChIP-seq peaks (CTCF_ENCFF206AQV.bed), the result of fold change over control of H3K27me3 (H3K27me3_hg38_GSM3907592.bedgraph) and H3K36me3 (H3K36me3_hg38_ENCSR910LIE.bedgraph). The software SuperTLD (https://github.com/deepomicslab/SuperTLD) can directly take the data as input. Usage: uncompress the example_data.zip into the directory of ./data
DOI: 10.5258/soton/d2093
title: Dataset for Confining the growth of mesoporous silica films into nanospaces: towards surface nanopatterning

description: Raw data in text and image format associated with figures in the main text and supplementary information of this article.
DOI: 10.6084/m9.figshare.20079740
title: Supplementary Material for: Miniaturized bioengineered models for preterm fetal membrane healing

description: Introduction: The reason for the absence of fetal membrane (FM) healing after a fetoscopic intervention is not known. We hypothesize that the lack of robust miniaturized models to study preterm FM functions is currently hampering the development of new treatments for FM healing. Specifically, miniaturized models to study preterm FM healing with minimal amounts of tissue are currently lacking. Methods: In this study, we collected FMs from planned cesarean deliveries and developed different ex vivo models with an engineered biomaterial to study FM healing. Then, the effect of PDGF-BB on the migration of cells from preterm and term FMs was evaluated. Results: FMs could be viably cultured ex vivo for 14 days. In a model of punctured FMs, migration of cells into FM defects was less pronounced than migration out of the tissue into the biomaterial. In a miniaturized model of preterm cell migration, PDGF-BB promoted migration of preterm amnion cells into the biomaterial. Discussion and Conclusion: By using a novel miniaturized model of preterm tissue, we here successfully demonstrate that PDGF-BB can promote preterm FM cell migration of microtissues encapsulated in a three-dimensional environment.
DOI: 10.5281/zenodo.5846028
title: Data for growth of marine Trichoderma sp. T2 in ambr250 to produce mucic acid

description: These files contain data published in the journal article by Tamminen et al. 2022 ... There are 3 files. One contains online and offline data generated when cultivating Trichoderma sp. VTT D-221704 (formerly referred to as T2) or Trichoderma reesei D-161646 on glucose and D-galacturonate containing medium in fed-batch cultivation in the ambr250 robotic microbioreactor system. One file contains CO2 data from 2 L bioreactor cultivations published earlier by Vidgren et al., 2020 for which the CO2 data was not included. And one file contains similar CO2 data from a 1 L and a 250 L bioreactor cultivation, published earlier by Paasikallio et al. 2017, without the CO2 data being referred to.
description: This research was supported by the Academy of Finland, funding decision 280955.
DOI: 10.5281/zenodo.5846027
title: Data for growth of marine Trichoderma sp. T2 in ambr250 to produce mucic acid

description: These files contain data published in the journal article by Tamminen et al. 2022 ... There are 3 files. One contains online and offline data generated when cultivating Trichoderma sp. VTT D-221704 (formerly referred to as T2) or Trichoderma reesei D-161646 on glucose and D-galacturonate containing medium in fed-batch cultivation in the ambr250 robotic microbioreactor system. One file contains CO2 data from 2 L bioreactor cultivations published earlier by Vidgren et al., 2020 for which the CO2 data was not included. And one file contains similar CO2 data from a 1 L and a 250 L bioreactor cultivation, published earlier by Paasikallio et al. 2017, without the CO2 data being referred to.
description: This research was supported by the Academy of Finland, funding decision 280955.
DOI: 10.5281/zenodo.6817556
title: The validity and reliability test of the leprosy life quality questionnaire in leprosy patients

description: This is underlying data for study titled<strong> The validity and reliability test of the leprosy life quality questionnaire in leprosy patients</strong>
DOI: 10.5281/zenodo.6783227
title: The validity and reliability test of the leprosy life quality questionnaire in leprosy patients

description: This is underlying data for study titled<strong> The validity and reliability test of the leprosy life quality questionnaire in leprosy patients</strong>
DOI: 10.6084/m9.figshare.14130373
title: Biological activated carbon process for biotransformation of azo dye Carmoisine by <i>Klebsiella</i> spp.

description: The feasibility of employing the biological activated carbon (BAC) process to debilitate azo dye Carmoisine by <i>Klebsiella</i> spp. was investigated. Plate assay revealed the capability of <i>Klebsiella</i> spp. for removal of Carmoisine via degradation. Kinetic parameters were measured for Carmoisine debilitation by <i>Klebsiella</i> spp. using the suspended anaerobic process. Two types of granular and rod-shaped activated carbon were used to form the biological beds in order to study the Carmoisine debilitation in batch processes. Scanning electron microscopy (SEM) and confocal laser scanning microscopy (CLSM) were used to indicate the colonization and biofilm formation of bacteria grown on activated carbon particles (ACPs). Thin-layer chromatography (TLC), liquid chromatography–mass spectrometry (LC–MS), high-pressure liquid chromatography (HPLC) and biosorption studies demonstrated biotransformation of Carmoisine into its constituent aromatic amines during the Carmoisine debilitation in suspended anaerobic and BAC processes. The porosity of activated carbons, inoculation size and age of biological beds were the important factors affecting the viability of bacterial cells grown on ACPs and, consequently, the rate and efficiency of the Carmoisine debilitation process determined through spectrophotometry. The reusability of biological beds was demonstrated by conducting sequential batch experiments. In conclusion, the BAC process proved to be an efficient method for anaerobic dye degradation.
DOI: 10.6084/m9.figshare.14130373.v2
title: Biological activated carbon process for biotransformation of azo dye Carmoisine by <i>Klebsiella</i> spp.

description: The feasibility of employing the biological activated carbon (BAC) process to debilitate azo dye Carmoisine by <i>Klebsiella</i> spp. was investigated. Plate assay revealed the capability of <i>Klebsiella</i> spp. for removal of Carmoisine via degradation. Kinetic parameters were measured for Carmoisine debilitation by <i>Klebsiella</i> spp. using the suspended anaerobic process. Two types of granular and rod-shaped activated carbon were used to form the biological beds in order to study the Carmoisine debilitation in batch processes. Scanning electron microscopy (SEM) and confocal laser scanning microscopy (CLSM) were used to indicate the colonization and biofilm formation of bacteria grown on activated carbon particles (ACPs). Thin-layer chromatography (TLC), liquid chromatography–mass spectrometry (LC–MS), high-pressure liquid chromatography (HPLC) and biosorption studies demonstrated biotransformation of Carmoisine into its constituent aromatic amines during the Carmoisine debilitation in suspended anaerobic and BAC processes. The porosity of activated carbons, inoculation size and age of biological beds were the important factors affecting the viability of bacterial cells grown on ACPs and, consequently, the rate and efficiency of the Carmoisine debilitation process determined through spectrophotometry. The reusability of biological beds was demonstrated by conducting sequential batch experiments. In conclusion, the BAC process proved to be an efficient method for anaerobic dye degradation.
DOI: 10.5281/zenodo.6817607
title: Training data - Hydraulic Head Probabilistic MLP-NN

description: Training data for paper on hydraulic head predictions using an MLP-NN.
DOI: 10.5281/zenodo.6817606
title: Training data - Hydraulic Head Probabilistic MLP-NN

description: Training data for paper on hydraulic head predictions using an MLP-NN.
DOI: 10.6084/m9.figshare.20285880
title: Data Sheet

description: datasheet of GOLD, Crude oil, OVX GVZ
DOI: 10.6084/m9.figshare.20285880.v1
title: Data Sheet

description: datasheet of GOLD, Crude oil, OVX GVZ
DOI: 10.5281/zenodo.6817573
title: Structurally well-defined anti-π-allyliridium complexes catalyze Z-retentive asymmetric allylic alkylation of oxindoles

description: Uploaded herein are all the output files of the computational studies on Ir-catalyzed <em>Z</em>-retentive asymmetric allylic alkylation of oxindoles. Some Gaussian checkpoint files, summary of Mayer bond order calculations (as plain txt files), and the output and checkpoint files of the calculations on a known Ir-complex (JACS, 2017, 3606), are included in this update.
DOI: 10.5281/zenodo.6814665
title: Structurally well-defined anti-π-allyliridium complexes catalyze Z-retentive asymmetric allylic alkylation of oxindoles

description: Uploaded herein are all the output files of the computational studies on Ir-catalyzed <em>Z</em>-retentive asymmetric allylic alkylation of oxindoles. Some Gaussian checkpoint files, summary of Mayer bond order calculations (as plain txt files), and the output and checkpoint files of the calculations on a known Ir-complex (JACS, 2017, 3606), are included in this update.
DOI: 10.5281/zenodo.6817547
title: Detecting TAD-like domains from RNA-associated interactions

description: The example data comprises six files. One is the RNA-chromatin contact map of chr22 constructed from iMARGI HEK dataset (iMARGI_chr22_RAI_matrix_100kb.txt). For Hi-C data, we collect the contact map of chr22 from the Hi-C HEK293T dataset (HEK293T_chr22_100KR_matrix.txt) as well as the detected TADs result (HEK293T_chr22_100KR_matrix.txt.multi2D_AllH2_sparse.tsv). To evaluate the epigenetic characteristic enrichment of inferred TAD-like domains, we download the CTCF TF ChIP-seq peaks (CTCF_ENCFF206AQV.bed), the result of fold change over control of H3K27me3 (H3K27me3_hg38_GSM3907592.bedgraph) and H3K36me3 (H3K36me3_hg38_ENCSR910LIE.bedgraph). The software SuperTLD (https://github.com/deepomicslab/SuperTLD) can directly take the data as input. Usage: uncompress the example_data.zip into the directory of ./data
DOI: 10.5281/zenodo.6817655
title: Chaotic Dynamics in a Two-Droplet Pilot Wave System: A Numerical Simulation

description: Data set and results for our university modeling project.
DOI: 10.5281/zenodo.6334308
title: Detecting TAD-like domains from RNA-associated interactions

description: The example data comprises six files. One is the RNA-chromatin contact map of chr22 constructed from iMARGI HEK dataset (iMARGI_chr22_RAI_matrix_100kb.txt). For Hi-C data, we collect the contact map of chr22 from the Hi-C HEK293T dataset (HEK293T_chr22_100KR_matrix.txt) as well as the detected TADs result (HEK293T_chr22_100KR_matrix.txt.multi2D_AllH2_sparse.tsv). To evaluate the epigenetic characteristic enrichment of inferred TAD-like domains, we download the CTCF TF ChIP-seq peaks (CTCF_ENCFF206AQV.bed), the result of fold change over control of H3K27me3 (H3K27me3_hg38_GSM3907592.bedgraph) and H3K36me3 (H3K36me3_hg38_ENCSR910LIE.bedgraph). The software SuperTLD (https://github.com/deepomicslab/SuperTLD) can directly take the data as input. Usage: uncompress the example_data.zip into the directory of ./data
DOI: 10.5281/zenodo.6817654
title: Chaotic Dynamics in a Two-Droplet Pilot Wave System: A Numerical Simulation

description: Data set and results for our university modeling project.
DOI: 10.15151/esrf-es-771318652
title: Austrian Crystallographic Diffraction Consortium

description: This proposed Austrian Crystallographic Diffraction Consortium (ACDC) BAG is to support various macromolecular structural biology groups across Austria (totally 15 research groups at 8 institutions in 5 cities). We employ mainly the technique of X-ray crystallography to characterize macromolecular biological complexes. Approval of this BAG will be absolutely essential for researchers in all these groups to carry out their structural studies on various health-related subjects, which are targeted at characterizing large molecular assemblies or proteins currently under-represented in the PDB, including membrane proteins. Corresponding high-resolution diffraction data are only obtainable through the use of synchrotron radiation sources. Thus regular synchrotron access is highly desirable to maintain a competitive advantage in our individual research fields.
DOI: 10.6084/m9.figshare.20285940
title: HD2.tar.gz

description: HD2 Testdata for GCMTools
DOI: 10.6084/m9.figshare.20285940.v1
title: HD2.tar.gz

description: HD2 Testdata for GCMTools
DOI: 10.6084/m9.figshare.20227866.v1
title: Supporting data

description: Data to support the conclusions of a manuscript currently under consideration. Detailed information will be updated upon acceptance.
DOI: 10.25403/upresearchdata.20283729
title: Teacher perceptions on positive behaviour interventions and supports (PBIS)

description: This dataset consists of two documents. The first document is interview transcriptions which consist of four full transciptions of semi-structured interviews. The participants in the interviews were educators in a full-service school. The interviews were transcribed and coded using the thematic analysis process. The codes were further analysed into emergent themes. The second document lists the emergent themes from the study as well as the codes identified from each participant's interviews.
DOI: 10.5281/zenodo.5946940
title: TUVOpipe: a pipeline to search for UV transients with Swift-UVOT

description: This is a basic reproduction package for the paper 'TUVOpipe: a pipeline to search for UV transients with Swift-UVOT' by Modiano et al. (2022). It aims to provide the most important data products to check and reproduce the main results of the paper, listing all software used and data archives containing the public data used. The paper is available on arxiv: TUVOpipe: a pipeline to search for UV transients with Swift-UVOT The paper has been accepted for publication in Astronomy & Astrophysics (acceptance date: 09/02/2022). DOI: 10.1051/0004-6361/202142997
DOI: 10.5281/zenodo.5946939
title: TUVOpipe: a pipeline to search for UV transients with Swift-UVOT

description: This is a basic reproduction package for the paper 'TUVOpipe: a pipeline to search for UV transients with Swift-UVOT' by Modiano et al. (2022). It aims to provide the most important data products to check and reproduce the main results of the paper, listing all software used and data archives containing the public data used. The paper is available on arxiv: TUVOpipe: a pipeline to search for UV transients with Swift-UVOT The paper has been accepted for publication in Astronomy & Astrophysics (acceptance date: 09/02/2022). DOI: 10.1051/0004-6361/202142997
DOI: 10.5281/zenodo.6793457
title: Dataset of very-high-resolution satellite RGB images to train deep learning models to detect and segment high-mountain juniper shrubs in Sierra Nevada (Spain)

description: This dataset provides annotated very-high-resolution satellite RGB images extracted from Google Earth to train deep learning models to perform instance segmentation of Juniperus communis L. and Juniperus sabina L. shrubs. All images are from the high mountain of Sierra Nevada in Spain. The dataset contains 810 images (.jpg) of size 224x224 pixels. We also provide partitioning of the data into Train (567 images), Test (162 images), and Validation (81 images) subsets. Their annotations are provided in three different .json files following the COCO annotation format.
description: This research has been supported by DETECTOR (A-RNM-256-UGR18 Universidad de Granada/FEDER), and LifeWatch SmartEcomountains (LifeWatch-2019-10-UGR-01 Ministerio de Ciencia e Innovación/Universidad de Granada/FEDER).
DOI: 10.5281/zenodo.6793456
title: Dataset of very-high-resolution satellite RGB images to train deep learning models to detect and segment high-mountain juniper shrubs in Sierra Nevada (Spain)

description: This dataset provides annotated very-high-resolution satellite RGB images extracted from Google Earth to train deep learning models to perform instance segmentation of Juniperus communis L. and Juniperus sabina L. shrubs. All images are from the high mountain of Sierra Nevada in Spain. The dataset contains 810 images (.jpg) of size 224x224 pixels. We also provide partitioning of the data into Train (567 images), Test (162 images), and Validation (81 images) subsets. Their annotations are provided in three different .json files following the COCO annotation format.
description: This research has been supported by DETECTOR (A-RNM-256-UGR18 Universidad de Granada/FEDER), and LifeWatch SmartEcomountains (LifeWatch-2019-10-UGR-01 Ministerio de Ciencia e Innovación/Universidad de Granada/FEDER).