cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23302022
title: SEM images, quantitative analysis code of SEM images, and data analysis code for "Grass pollen surface ornamentation is diverse across the phylogeny: evidence from northern South America and the global literature"

description: The grasses are one of the most diverse plant families on Earth, however, their classification and evolutionary history are obscured by their pollen stenopalynous (similar) morphology. A combination of high-resolution imaging of pollen surface ornamentation and computational analysis has previously been proposed as promising tool to classify grass taxonomic boundaries. In this study, we test this hypothesis by studying Poaceae pollen across the phylogeny from plants collected in northern South America, but also from published literature across the globe. We assessed if morphotypes that we establish using descriptive terminology are supported by computational analysis, if they vary along six (a)biotic variables and how vary across the phylogeny. Based on this analysis, we constructed a reference framework for pollen surface ornamentation morphotypes. Our results showed that there is a very wide variation of grass pollen surface ornamentation. We identified nine new and six known morphotypes and established our dataset of 223 species (243 individual plant specimens) from 11 subfamilies. Computational analysis showed that our morphotypes are well-supported by two quantitative features of pollen sculptural elements (size and density). The specific dataset and mapping of the phylogeny confirmed that pollen morphological sculpture is unrelated to (a)biotic variables but is diverse across through the phylogeny.
DOI: 10.5281/zenodo.8027790
title: Chemical and isotopic data of laboratory batch and column experiments using industrial wine wastes to biostimulate denitrification

description: Nitrate and nitrite are common pollutants in wastewater and agricultural runoff, and their removal is crucial to mitigate environmental impacts. The study focused on utilising sustainable and cost-effective carbon sources to enhance denitrification performance in nitrate-contaminated field water. Laboratory batch and column experimental work was carried out aimed at investigating the feasibility of using wine wastes as electron donors in a feasibility study to biostimulate biological denitrification. Two industrial wine wastes were collected from local wineries (lias and vinico). The samples were characterized for their organic carbon content to determine their suitability as electron donors. Two sets of denitrification reactors were set up, consisting of a series of crystal Pyrex<sup>®</sup> reactors. Each reactor contained nitrate-contaminated water, and gravel from the field, which was covered with aluminium crimp caps with septa and purged with Ar to create an anaerobic environment. Each series of reactors were biostimulated with the respective wine waste. Control reactors without wine wastes were also prepared for comparison. Lias was successful in removing nitrates in the batch experiment and was subsequently used in the column experiment to test its potential in a continuous flow system. The chemical and isotopic results of the two sets of parallel batch experiments and the column experiment are presented in this data. A geochemical model was performed to simulate the experimental results for the future field application using the Phreeqc and the Gibbstudio software and iso.dat and the wateq4f databases.
description: {"references": ["Nardi, A., de Vries, L.M., 2017. GibbsStudio, Barcelona Science Technologies SL, Barcelona, Spain. Retrieved from https://gibbsstudio.io/", "Parkhurst, D.L., Appelo, C.A.J., 2013. Description of Input and Examples for PHREEQC Version 3 \u2014 A Computer Program for Speciation, Batch-Reaction, One-Dimensional Transport, and Inverse Geochemical Calculations. U.S. Geol. Surv. Tech. Methods, B. 6, chapter A43 6-43A. https://doi.org/10.1016/0029-6554(94)90020-5"]}
DOI: 10.5281/zenodo.8027789
title: Chemical and isotopic data of laboratory batch and column experiments using industrial wine wastes to biostimulate denitrification

description: Nitrate and nitrite are common pollutants in wastewater and agricultural runoff, and their removal is crucial to mitigate environmental impacts. The study focused on utilising sustainable and cost-effective carbon sources to enhance denitrification performance in nitrate-contaminated field water. Laboratory batch and column experimental work was carried out aimed at investigating the feasibility of using wine wastes as electron donors in a feasibility study to biostimulate biological denitrification. Two industrial wine wastes were collected from local wineries (lias and vinico). The samples were characterized for their organic carbon content to determine their suitability as electron donors. Two sets of denitrification reactors were set up, consisting of a series of crystal Pyrex<sup>®</sup> reactors. Each reactor contained nitrate-contaminated water, and gravel from the field, which was covered with aluminium crimp caps with septa and purged with Ar to create an anaerobic environment. Each series of reactors were biostimulated with the respective wine waste. Control reactors without wine wastes were also prepared for comparison. Lias was successful in removing nitrates in the batch experiment and was subsequently used in the column experiment to test its potential in a continuous flow system. The chemical and isotopic results of the two sets of parallel batch experiments and the column experiment are presented in this data. A geochemical model was performed to simulate the experimental results for the future field application using the Phreeqc and the Gibbstudio software and iso.dat and the wateq4f databases.
description: {"references": ["Nardi, A., de Vries, L.M., 2017. GibbsStudio, Barcelona Science Technologies SL, Barcelona, Spain. Retrieved from https://gibbsstudio.io/", "Parkhurst, D.L., Appelo, C.A.J., 2013. Description of Input and Examples for PHREEQC Version 3 \u2014 A Computer Program for Speciation, Batch-Reaction, One-Dimensional Transport, and Inverse Geochemical Calculations. U.S. Geol. Surv. Tech. Methods, B. 6, chapter A43 6-43A. https://doi.org/10.1016/0029-6554(94)90020-5"]}
DOI: 10.5281/zenodo.8041792
title: Data extraction format

description: data extraction format used to determine the survival status of patients admitted to the intensive care unit.
DOI: 10.5281/zenodo.8041793
title: Data extraction format

description: data extraction format used to determine the survival status of patients admitted to the intensive care unit.
DOI: 10.5281/zenodo.7969563
title: Developing a Physics-informed Deep Learning Model to Simulate Runoff Response to Climate Change in Alpine Catchments

description: This data archive includes simulated daily runoff (mm/d) of five models during 1960‒2019 at the three subbasins in the source region of the Yellow River. For more details please see the publication.
DOI: 10.5281/zenodo.8041771
title: Developing a Physics-informed Deep Learning Model to Simulate Runoff Response to Climate Change in Alpine Catchments

description: This data archive includes the source code of EXP-HYDRO, standard DL, hybrid-J, and hybrid-Z models, as well as simulated daily runoff (mm/d) of all five models in the paper at the three subbasins in the source region of the Yellow River. For more details please see the publication. Please cite the paper as follows: Zhong, L., Lei, H., & Gao, B. (2023). Developing a physics-informed deep learning model to simulate runoff response to climate change in Alpine catchments. Water Resources Research, 59, e2022WR034118. https://doi. org/10.1029/2022WR034118
DOI: 10.5281/zenodo.7969562
title: Developing a Physics-informed Deep Learning Model to Simulate Runoff Response to Climate Change in Alpine Catchments

description: This data archive includes the source code of EXP-HYDRO, standard DL, hybrid-J, and hybrid-Z models, as well as simulated daily runoff (mm/d) of all five models in the paper at the three subbasins in the source region of the Yellow River. For more details please see the publication. Please cite the paper as follows: Zhong, L., Lei, H., & Gao, B. (2023). Developing a physics-informed deep learning model to simulate runoff response to climate change in Alpine catchments. Water Resources Research, 59, e2022WR034118. https://doi. org/10.1029/2022WR034118
DOI: 10.6084/m9.figshare.23292302
title: IVT_SINV

description: RNA was synthesized in an in vitro transcription system containing the linearized SINV cDNA template.
DOI: 10.6084/m9.figshare.23292269
title: BHK_SINV

description: Poly(A) RNA was isolated from SINV-infected BHK-21 cells 1 day post-infection. Viral RNA reads were extracted from total reads.
DOI: 10.6084/m9.figshare.23292269.v2
title: BHK_SINV

description: Poly(A) RNA was isolated from SINV-infected BHK-21 cells 1 day post-infection. Viral RNA reads were extracted from total reads.
DOI: 10.6084/m9.figshare.23292269.v1
title: Virus infection and RNA isolation data (<strong>BHK-21 </strong>and <strong>C6/36</strong>)

description: The full-length cDNA clone of SINV strain Toto 1101 was kindly provided by Charles Rice’s lab, the Rockefeller University, USA. <em>Aedes albopictus</em> C6/36 cell and baby hamster kidney BHK-21 cell were purchased from the American Type Culture Collection (ATCC), Manassas, VA, USA. <br> Cells were seeded into 6-well plates at a density of 5 × 105 cells/well and inoculated with viruses at a multiplicity of infection of 0.1. After one-hour incubation, the cell monolayers were washed three times with phosphate-buffered saline and covered with 1 mL cell culture media. The supernatant was removed post-infection at designated time points, and 800 uL TRIzol Reagent (Invitrogen, Waltham, MA, USA) was added to the cell monolayer. Phase separation and total RNA precipitation were performed according to the manufacturer’s instructions. The RNAs of SINV-infected C6/36 cells were isolated at 3 days post-infection (dpi). The RNAs of SINV-infected BHK-21 cells were isolated at 1 dpi.
DOI: 10.48366/r597878
title: Comparison of geoscience knowledge graphs

description: The Comparison shows some approaches for organizing geoscientific data in a graph-based format.
DOI: 10.5281/zenodo.8039811
title: Data for NCBI BioProject PRJNA966929

description: Data for NCBI BioProject PRJNA966929: Total Shark microbiome 16S We here analyzed bacterial communities associated with different microenvironments associated with wild-caught black-tip reef sharks (Carcharhinus melanopterus), specifically the body surface, oral/buccal cavity, and the cloaca in comparison to the water column from the Amirante Islands, Seychelles, using 16S rRNA gene amplicon sequencing. Description:Supp. Table S2. 16S rRNA gene sequence counts distributed over amplicon sequence variants (ASVs) and samples (shark and seawater samples), including taxonomic annotation and representative sequences; low abundant sequences (&lt; 10 sequences in total across all samples) and contaminants were removed.
DOI: 10.18712/nsd-nsd2273-v2
title: The Law and Economics of Relational Contracts, 2013

description: The economy is full of relational contracts, norms and codes of conduct that affect behavior of individuals within firms and business dealing between firms. Most contractual relationships are both formal and relational: The parties know that they have a legally binding (formal) contract that governs the basic parts of their exchange, but they also know that many of the expectations and promises that are made during their ongoing contractual relationship cannot be enforced by a court of law, and thus need to be based on trust. The aim of the research project “The Law and Economics of Relational Contracts” was to analyze how the interaction between formal contracts, legal institutions and relational contracts affect i) incentives within and between firms and ii) the boundaries and scope of firms. More broadly, the provision and/or effect of incentives in situations where legal institutions are imperfect and/or humans are motivated by more than money were analyzed. Theoretical models were developed and controlled laboratory experiments conducted. The project includes two subprojects: "Repeated money game" (project 1) and “The prisoners dilemma with an infinite horizon” (project 2).
DOI: 10.5281/zenodo.7632177
title: Oxygen utilisation rate in the ocean - a short data compilation

description: This is a short data compilation of oxygen utilisation rates, that was used to compare with results obtained in Sulpis et al. (in preparation): "Respiration patterns in the dark ocean". Data included in this file are from the following studies: Feely, R. A., Sabine, C. L., Schlitzer, R., Bullister, J. L., Mecking, S., & Greeley, D. (2004). Oxygen Utilization and Organic Carbon Remineralization in the Upper Water Column of the Pacific Ocean. Journal of Oceanography, 60, 45–52. Hinga, K. R. (1985). Evidence for a higher average primary productivity in the Pacific than in the Atlantic Ocean. Deep Sea Research Part A. Oceanographic Research Papers, 32(2), 117–126. https://doi.org/10.1016/0198-0149(85)90023-8 Karstensen, J., Stramma, L., & Visbeck, M. (2008). Oxygen minimum zones in the eastern tropical Atlantic and Pacific oceans. Progress in Oceanography, 77(4), 331–350. https://doi.org/10.1016/j.pocean.2007.05.009 Wang, W., Cai, M., Huang, P., Ke, H., Liu, M., Liu, L., Deng, H., Luo, B., Wang, C., Zheng, X., & Li, W. (2021). Transit Time Distributions and Apparent Oxygen Utilization Rates in Northern South China Sea Using Chlorofluorocarbons and Sulfur Hexafluoride Data—Wang—2021—Journal of Geophysical Research: Oceans—Wiley Online Library. Journal of Geophysical Research Oceans, 126(8). https://agupubs-onlinelibrary-wiley-com.proxy.library.uu.nl/doi/10.1029/2021JC017535 Craig, H. (1971). The deep metabolism: Oxygen consumption in abyssal ocean water. Journal of Geophysical Research (1896-1977), 76(21), 5078–5086. https://doi.org/10.1029/JC076i021p05078 Jenkins, W. J. (1998). Studying subtropical thermocline ventilation and circulation using tritium and 3He. Journal of Geophysical Research: Oceans, 103(C8), 15817–15831. https://doi.org/10.1029/98JC00141 Jenkins, W. J. (1982). Oxygen utilization rates in North Atlantic subtropical gyre and primary production in oligotrophic systems. Nature, 300(5889), 246–248. Sarmiento, J. L., Thiele, G., Key, R. M., & Moore, W. S. (1990). Oxygen and nitrate new production and remineralization in the North Atlantic subtropical gyre. Journal of Geophysical Research: Oceans, 95(C10), 18303–18315. https://doi.org/10.1029/JC095iC10p18303 Naqvi, S. W. A., Shailaja, M. S., Dileep Kumar, M., & Sen Gupta, R. (1996). Respiration rates in subsurface waters of the northern Indian Ocean: Evidence for low decomposition rates of organic matter within the water column in the Bay of Bengal. Deep Sea Research Part II: Topical Studies in Oceanography, 43(1), 73–81. https://doi.org/10.1016/0967-0645(95)00080-1 Arı́stegui, J., Denis, M., Almunia, J., & Montero, M. F. (2002). Water-column remineralization in the Indian sector of the Southern Ocean during early spring. Deep Sea Research Part II: Topical Studies in Oceanography, 49(9–10), 1707–1720. https://doi.org/10.1016/S0967-0645(02)00008-5 Broecker, W. S., Blanton, S., Smethie, W. M., & Ostlund, G. (1991). Radiocarbon decay and oxygen utilization in the Deep Atlantic Ocean. Global Biogeochemical Cycles, 5(1), 87–117. https://doi.org/10.1029/90GB02279
DOI: 10.6084/m9.figshare.23508495.v1
title: Supplementary Material for: A Giant Urachal Accessory Spleen: Case Report

description: Accessory spleen (AS) refers to single or multiple splenic tissues which appear outside the relative normal spleen position results from embryonic dysplasia similar in structure and function to the spleen. AS is frequently observed in the splenic hilus and or adjacent to the tail of pancreas, and only a few cases occurred in the pelvic cavity. We present an extremely rare AS case in urachus, which was initially considered as an urachal neoplasm revealed on CT images with big mass. However, the postoperative pathology confirmed it was an AS that had not been reported at urachal before. Urachal AS can be misdiagnosed as a tumor, so it is vital to make an accurate imaging preoperative diagnosis to avoid unnecessary biopsy and surgery.
DOI: 10.6084/m9.figshare.22598449.v1
title: Supplementary Material for: Association of non-melanoma skin cancers, melanoma and merkel cell carcinoma with dermatologic medications, a case control pharmacovigilance study of the FDA Adverse Events Reporting System

description: Background: Medications used in the treatment of dermatologic conditions have been associated with squamous cell carcinoma (SCC), basal cell carcinoma (BCC), melanoma and Merkel cell carcinoma (MCC). Objective: To examine the relationship between systemic dermatologic medications and skin cancer in the FDA Adverse Event Reporting System (FAERS). Methods: Case control analyses were performed in FAERS from 1968-2021 to examine the reporting odds ratios (ROR) for SCC, BCC, melanoma and MCC. Results: The oral immunosuppressants were all associated with increased ROR of SCC, BCC, melanoma and MCC. Azathioprine had the highest ROR for SCC (34.13, 95%CI 29.07-40.08), BCC (21.15, 95%CI 20.63-25.98) and MCC (44.76, 95%CI 31.52-63.55), while quinacrine and guselkumab had the highest ROR for melanoma (13.14, 95%CI 1.84-93.89 vs. 12.73, 95%CI 10.60-15.30 respectively). The TNF-a inhibitors were associated with an increased ROR for all skin cancers investigated. Conclusions: The oral immunosuppressants and many biologic medications were associated with an increased ROR of skin cancers including TNF-alpha inhibitors (etanercept, adalimumab, infliximab), IL-23 or IL 12/23 inhibitors (ustekinumab, risankizumab), and the CD-20 inhibitor rituximab, but not dupilumab or IL-17 inhibitors.
DOI: 10.6084/m9.figshare.21981737
title: Supplementary Material for: Short-term safety and efficacy of intravitreal brolucizumab injections for neovascular age-related macular degeneration: a multicenter retrospective real-world study

description: Introduction: To determine the short-term real-world safety and efficacy of intravitreal brolucizumab injections in Korean patients with neovascular age-related macular degeneration (nAMD). Methods: This multicenter retrospective study involved 294 eyes (treatment naïve 20 eye (6.8%) and non-treatment naïve 274 eyes (93.2%)) of 290 patients from 13 hospitals or retinal centers in South Korea. Patients with nAMD who received brolucizumab injection(s) between April 1 and November 30, 2021, with a follow-up ≥1 month, were included. Primary outcomes were safety, incidence of intraocular inflammation (IOI), and potential risk factors. The secondary outcome was efficacy, i.e., change in best-corrected visual acuity (BCVA) and optical coherence tomography-measured macular thickness and retinal fluid. Results: The mean age was 71.63±8.66. The follow-up period was 2.38±0.79 months. The mean number of brolucizumab injections during the follow-up was 1.52±0.58. The overall incidence of IOI was 13.9% (n=41 eyes). Most IOI cases were of anterior uveitis (8.8%, 26 eyes), followed by retinal vasculitis (2.4%, seven eyes) and occlusive retinal vasculitis (0.3%, one eye). Most eyes showed IOI resolution (n=40, 97.5%) and BCVA restoration (n=39, 95.1%) with or without corticosteroid treatment during the follow-up. Age, sex, IOI history, or other anti-vascular endothelial growth factor injection histories were not associated with the occurrence of IOI. However, only thin subfoveal choroidal thickness (SFCT) was associated with the occurrence of IOI (odds ratio=0.995, p=0.020). BCVA at 1 month improved from baseline (Baseline 0.518±0.356 vs. 1 month 0.503±0.383, p=0.023), but the improvement was not maintained. Anatomical improvement was significant after 3 months. Conclusion: IOI was well-controlled with or without steroid treatment. Most IOI eyes (95.1%) were restored to the level of vision before IOI occurrence and occlusive vasculitis was rare. In the short term, brolucizumab injection effectively improved vision at 1 month and dried retinal fluid for 3 months.
DOI: 10.25835/tq4gncsp
title: Einsatzverhalten von pCBN- und PKD-Werkzeugen bei der sauerstofffreien Titanzerspanung

description: Dataset for the publication Einsatzverhalten von pCBN- und PKD-Werkzeugen bei der sauerstofffreien Titanzerspanung
DOI: 10.4121/21591378
title: Data underlying the publication: Trace metals from microbial growth media form in situ electro-catalysts

description: Data from electrochemical experiments with micronutrients used as hydrogen evolution catalyst in bio-electrochemical process conditions
DOI: 10.4121/21591378.v1
title: Data underlying the publication: Trace metals from microbial growth media form in situ electro-catalysts

description: Data from electrochemical experiments with micronutrients used as hydrogen evolution catalyst in bio-electrochemical process conditions
DOI: 10.25835/62pv1mde
title: Einsatzverhalten von pCBN- und PKD-Werkzeugen bei der sauerstofffreien Titanzerspanung

description: Dataset for the publication Einsatzverhalten von pCBN- und PKD-Werkzeugen bei der sauerstofffreien Titanzerspanung
DOI: 10.5281/zenodo.8041596
title: Time-Resolved XAS Provides Direct Evidence for Oxygen Activation on Cationic Iron in a Bimetallic Pt-FeOx/Al2O3 Catalyst

description: Open data for "Time-Resolved XAS Provides Direct Evidence for Oxygen Activation on Cationic Iron in a Bimetallic Pt-FeOx/Al2O3 Catalyst" published in ACS Catal. 2021, 11, 11793−11805 https://doi.org/10.1021/acscatal.1c02795
DOI: 10.5281/zenodo.8041595
title: Time-Resolved XAS Provides Direct Evidence for Oxygen Activation on Cationic Iron in a Bimetallic Pt-FeOx/Al2O3 Catalyst

description: Open data for "Time-Resolved XAS Provides Direct Evidence for Oxygen Activation on Cationic Iron in a Bimetallic Pt-FeOx/Al2O3 Catalyst" published in ACS Catal. 2021, 11, 11793−11805 https://doi.org/10.1021/acscatal.1c02795
DOI: 10.5281/zenodo.8041866
title: Raw data for Broaden the application of Yarrowia Lipolytica synthetic biology tools to explore the potential of Yarrowia clade biodiversity

description: Raw data for growth curves and fluorescence/OD ratio for article "Broaden the application of Yarrowia Lipolytica synthetic biology tools to explore the potential of Yarrowia clade biodiversity"
DOI: 10.5281/zenodo.8041865
title: Raw data for Broaden the application of Yarrowia Lipolytica synthetic biology tools to explore the potential of Yarrowia clade biodiversity

description: Raw data for growth curves and fluorescence/OD ratio for article "Broaden the application of Yarrowia Lipolytica synthetic biology tools to explore the potential of Yarrowia clade biodiversity"
DOI: 10.5281/zenodo.8041702
title: Platinum-Iron(II) Oxide Sites Directly Responsible for Preferential Carbon Monoxide Oxidation at Ambient Temperature: An Operando X-ray Absorption Spectroscopy Study

description: Open data for "Platinum-Iron(II) Oxide Sites Directly Responsible for Preferential Carbon Monoxide Oxidation at Ambient Temperature: An Operando X-ray Absorption Spectroscopy Study" Angew. Chem.Int. Ed. 2023,62, e202214032(1 of 11) https://doi.org/10.1002/anie.202214032
DOI: 10.5281/zenodo.8041701
title: Platinum-Iron(II) Oxide Sites Directly Responsible for Preferential Carbon Monoxide Oxidation at Ambient Temperature: An Operando X-ray Absorption Spectroscopy Study

description: Open data for "Platinum-Iron(II) Oxide Sites Directly Responsible for Preferential Carbon Monoxide Oxidation at Ambient Temperature: An Operando X-ray Absorption Spectroscopy Study" Angew. Chem.Int. Ed. 2023,62, e202214032(1 of 11) https://doi.org/10.1002/anie.202214032
DOI: 10.6084/m9.figshare.23518989.v1
title: NNI Database UPDATE

description: This dataset is an update of the dataset published by Ciampitti et al., 2022 (A global dataset to parametrize critical nitrogen dilution curves for major crop species). This dataset contains the result of extracting data of plant biomass, plant N concentration and harvest yield.