cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25390711.v1
title: Supplementary Material for: Diagnostic yield of exome sequencing in early onset hypertensive nephropathy in adults

description: Introduction: Hypertensive nephrosclerosis (HN) ranks as one of the most frequent causes of chronic kidney disease (CKD), but its very existence has repeatedly been called into question, especially in young adults. Its diagnostic framework is established chiefly on non-specific clinical criteria and its defining histopathological set of features are in fact shared by numerous other conditions. Genetic testing based on exome sequencing (ES) has emerged as a comprehensive tool to detect Mendelian diseases in timely fashion in nephrology with a significant number of re-established diagnoses. 
The aim of this study was to investigate the diagnostic yield of ES in patients with a clinical diagnosis of hypertensive nephropathy. 
Method: Since September 2018, ES has been readily available as part of the routine diagnostic work-up in our institution. The indication of ES includes hypertensive nephropathy of early onset (i.e., &lt; 45 years old). We retrospectively collected the ES data performed in the context of hypertensive nephropathy in our institution between September 2018 and February 2021. 
Results: A total of 128 patients were sequenced in the context of hypertensive nephropathy with early onset. The chief indications of ES were an early onset of CKD (47%), family history of kidney disease (8%), or both (18%). We detected diagnostic variants in 19 of the 128 patients (15%) encompassing a total of 13 different monogenic disorders. The diagnostic yield of ES was lower in patients of African ancestry (diagnostic yield of 7% versus 30% in non-African ancestry patients, p&lt;0.001). 
Conclusions: The high diagnostic yield of ES (15%) in a population of patients thought to have HN casts further doubts on the validity of the existing diagnosis criteria, including histological criteria, supposed to characterize the condition. This was especially true in patients with no African ancestry where ES positivity reached 30%.
DOI: 10.17632/p4xzwc7js3
title: ESG penalties R code

description: This is an R code for the research on ESG & financial penalties by Václav Brož and Stephanie Miller.
DOI: 10.6084/m9.figshare.19328939.v6
title: MultiPic: Multilingual Picture Database

description: Database of name agreement and familiarity for a set of 500 colored pictures of concrete objects in 33 different languages (i.e., American English, Australian English, Basque, Belgium Dutch, British English, Cantonese, Catalan, Cypriot Greek, Czech, Finnish, French, German, Greek, Hebrew, Hungarian, Italian, Korean, Lebanese Arabic, Malay, Malay English, Mandarin Chinese, Netherlands Dutch, Norwegian, Polish, Portuguese, Quebec French, Rioplatense Spanish, Russian, Serbian, Slovak, Spanish, Turkish, Welsh).
DOI: 10.6084/m9.figshare.20995384.v1
title: MERFISH probe target region sequences

description: Sequences for target regions of MERFISH probes used in gene panel
DOI: 10.6084/m9.figshare.29107385.v1
title: GraphThought Training Corpus

description: This is the corpus generated by paper "GraphThought: Graph Combinatorial Optimization with Thought Generation" using for training LLM.
DOI: 10.17632/kd3y4d4kkx
title: Data for: Insight on biogas potential data of cattle manure and olive cake for stimulating investigation on farm and commercial scale production

description: The data files attached here include the pre-processed data used to produce tables and figures appear in the linked manuscript.
DOI: 10.6084/m9.figshare.23556978.v1
title: Combined dataset for three sediment cores from the St. Lawrence River near Cornwall, ON

description: An excel file containing data for three sediment cores from the St. Lawrence River (two from nearshore Cornwall and one from downstream Grenadier Basin in Lake St. Francis). Data was generated and analyzed from 2020-2023. This file includes data on stable element concentrations, mercury, grain size, loss-on-ignition, chironomid taxa counts, and chironomid head capsule abundances for studied intervals from these sediment cores.
DOI: 10.6084/m9.figshare.23648046.v2
title: ChIP_session.rar

description: five ChIP tarcks of P.patens
DOI: 10.6084/m9.figshare.25888168.v1
title: Male and Female sequencing coverage for several beetle species

description: Male and Female whole genome sequencing coverage for several species of beetle.
DOI: 10.6084/m9.figshare.3519659.v1
title: Appendix I. Estimated eradication cost and success functions and data.

description: Estimated eradication cost and success functions and data.
DOI: 10.6084/m9.figshare.7557296.v3
title: Assembly and annotation of Fragilaria radians transcriptome

description: Accessory files generated upon assembly and annotation of <i>Fragilaria radians</i> transcriptome.<br>1) File_1_orthoGroups.by_group.zip -- Assignment of orthogroups by OrthoMCL for <i>Fragilaria radians</i> transcripts<br><br>2) File_2_Trinotate_report.csv.zip -- Trinotate annotation for <i>Fragilaria radians</i> transcripts<br><br>3) File_3_salmon.isoform.TMM.EXPR.matrix.E-inputs.zip -- List of assembled transcripts ordered by expression level.<br>Trinotate accessory scripts was used to generate this file. See https://github.com/trinityrnaseq/trinityrnaseq/wiki/Trinity-Transcript-Quantification#build-transcript-and-gene-expression-matrices for details.<br>4) oases_MA.fa.gz -- transcriptome assembly by Oases (merge-&gt;assemble)<br>5) trinity_MA.fa.gz -- transcriptome assembly by Trinity (merge-&gt;assemble)<br>6) oases_AM.fa.gz -- transcriptome assembly by Oases (assemble-&gt;merge)<br>7) trinity_AM.fa.gz -- transcriptome assembly by Trinity (assemble-&gt;merge)<br><br>8) Table_S1.xlsx -- Statistics of contaminated transcripts expressed above the 95th percentile level.<br>9) Table_S2.xlsx -- Transcripts annotated on the basis of Trinotate, blastp hits in diatom proteomes and protist hits against NCBI NR.<br>10) Table_S3.xlsx -- DE-statistics computed for 5,959 NExp/DSLT and 858 DSLT dark/light transcripts.<br>
DOI: 10.15468/dl.8wvhg2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina silus (Ascanius, 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 1.8496,26.9648 1.8496,26.9648 -7.1504,35.9648 -7.1504,35.9648 1.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013326-250525065834625/datasets/export for details.
DOI: 10.17632/ynk3sdvr45
title: Data for: Optimization and control of battery-flywheel compound energy storage system during an electric vehicle braking

description: The patial MATLAB codes for optimization and control
DOI: 10.6084/m9.figshare.14215874.v1
title: Supplementary Material for: Additional Value of Preoperative Albumin for Surgical Risk Stratification among Colorectal Cancer Patients

description: <b><i>Background:</i></b> BMI ≤18.5 kg/m<sup>2</sup> and preoperative weight loss may lead to inaccurate assessment of nutritional status, given the increasing prevalence of obesity. The aim of this study was to assess whether clinical evaluation of malnutrition based on these parameters is sufficient to predict complications after colorectal cancer surgery. <b><i>Materials and Methods:</i></b> The American College of Surgeons-National Quality Improvement Program database was queried from 2005 to 2018. Patients undergoing elective colorectal cancer surgery were divided into 4 groups: (1) albumin &lt;3.1 g/dL within 21 days of surgery, (2) European Society for Clinical Nutrition and Metabolism (ESPEN) 2 clinical parameters for malnutrition (≥10% loss of weight/6 months <i>plus</i> [BMI &lt;20 kg/m<sup>2</sup> if age &lt;70 years OR BMI &lt;22 kg/m<sup>2</sup> if age ≥70 years]), (3) both aforementioned criteria, and (4) none of aforementioned criteria. <b><i>Results:</i></b> Of 82,280 patients, 5,932 (7.2%) had hypoalbuminemia &lt;3.1 g/dL, 764 (0.9%) fulfilled clinical ESPEN 2 parameters, and 338 (0.4%) met both criteria. After adjusting for baseline confounders, patients in the hypoalbuminemia group had a higher risk of overall complications (odds ratio [OR] 1.92, <i>p</i> &lt; 0.05 vs. OR 1.18 in the ESPEN 2 group, <i>p</i> &lt; 0.05), major complications (OR 1.98, <i>p</i> &lt; 0.05 vs. OR 1.20, <i>p</i> &lt; 0.05), surgical complications (OR 1.77, 95% <i>p</i> &lt; 0.05 vs. OR 1.1, <i>p</i> &gt; 0.05), medical complications (OR 1.73, <i>p</i> &lt; 0.05 vs. OR 1.16, <i>p</i> &gt; 0.05), surgical site infection (OR 1.32, <i>p</i> &lt; 0.05 vs. OR 0.86, <i>p</i> &gt; 0.05), and prolonged hospitalization (OR 1.79, <i>p</i> &lt; 0.05 vs. OR 1.22, <i>p</i> &lt; 0.05). Patients who met both criteria were at highest risk. <b><i>Conclusions:</i></b> Preoperative measurement of serum albumin appears to be essential to identify patients at risk for complications after colorectal cancer surgery. Clinical evaluation through BMI and weight loss alone may underestimate surgery-associated risks in the USA.
DOI: 10.6084/m9.figshare.17035976.v1
title: Raw Data

description: these data include raw data for spectral signatures for poppy crops getting through a device called spectroradiometer. The data was taken over 3 months.
DOI: 10.17632/cybgt2yvtc
title: 5-Aminolevulinic Acid Photodynamic Therapy Versus Minocycline for moderate to severe rosacea: A single-center, randomized, evaluator-blind controlled study.

description: Background: 5-Aminolevulinic acid photodynamic therapy (ALA-PDT) showed potential to treat rosacea according to recent studies, but a lack of clinical evidence and unclear adverse effects limit its use. 
Objective: To compare the effect of ALA-PDT versus minocycline for rosacea.
Methods: In this single-center, randomized, evaluator-blind, controlled study, patients with moderate to severe rosacea were allocated to receive 3 to 5 sessions of ALA-PDT or 8 weeks of 100 mg daily minocycline treatment, followed by a 24-week follow-up.
Results: Of all the 44 randomized patients, 41 received complete treatment (ALA-PDT 20, Minocycline 21). At the end of treatment, ALA-PDT showed non-inferior improvement of papulopustular lesions and Rosacea-related Quality of Life (RosaQoL) compared to minocycline (median reduction of lesion count: 19 vs. 22, median change of RosaQoL score: 0.48 vs. 0.53). The Clinician’s Erythema Assessment (CEA) success of ALA-PDT was lower than minocycline’s (35% vs. 67%). Demodex density and relapse rate were comparable in both groups. Erythema, mild pain and exudation were the most common adverse reactions of ALA-PDT.
Conclusion: As minocycline does, ALA-PDT can improve rosacea mainly in papulopustular lesions and patients’ quality of life, indicating a new option for rosacea.
DOI: 10.17632/r49yg49ddc
title: Genetic screens identify host factors for SARS-CoV-2 and common cold coronaviruses. Wang et al.

description: Supplemental Tables S1 to S5 in Microsoft Excel format for the article "Genetic screens identify host factors for SARS-CoV-2 and common cold coronaviruses" (Wang et al., 2020): Table S1: CRISPR screen results. MaGECK output for positive gene enrichment analysis of SARS-CoV-2, 229E and OC43 host factor screens. Related to Figure 1. Table S2: Gene ontology enrichment analysis of individual CRISPR screens and network propagation clusters. Related to Figure 2. Table S3: Network propagation results. Related to Figure 2. Table S4: RNP editing efficiencies in A549-ACE2 and Huh7.5.1-ACE2/TMPRSS2 cells. Related to Figures 3 and 5. Table S5: Oligonucleotide sequences used in this study. Related to STAR Methods.
DOI: 10.6084/m9.figshare.4770412.v1
title: Supplementary Material for: Linkage Analysis of Autopsy-Confirmed Familial Alzheimer Disease Supports an Alzheimer Disease Locus in 8q24

description: <i>Background/Aims:</i> We have previously reported the results of an extended genome-wide scan of Swedish Alzheimer disease (AD)-affected families; in this paper, we analyzed a subset of these families with autopsy-confirmed AD. <i>Methods:</i> We report the fine-mapping, using both microsatellite markers and single-nucleotide polymorphisms (SNPs), in the observed maximum logarithm of the odds (LOD)-2 unit (LOD<sub>max</sub>-2) region under the identified linkage peak, linkage analysis of the fine-mapping data with additionally analyzed pedigrees, and association analysis of SNPs selected from candidate genes in the linked interval. The subset was made on the criterion of at least one autopsy-confirmed AD case per family, resulting in 24 families. <i>Results:</i> Linkage analysis of a family subset having at least one autopsy-confirmed AD case showed a significant nonparametric single-point LOD score of 4.4 in 8q24. Fine-mapping under the linkage peak with 10 microsatellite markers yielded an increase in the multipoint (mpt) LOD score from 2.1 to 3.0. SNP genotyping was performed on 21 selected candidate transcripts of the LOD<sub>max</sub>-2 region. Both family-based association and linkage analysis were performed on extended material from 30 families, resulting in a suggestive linkage at peak marker rs6577853 (mpt LOD score = 2.4). <i>Conclusion:</i> The 8q24 region has been implicated to be involved in AD etiology.
DOI: 10.6084/m9.figshare.5509441.v1
title: Model - Fine Image Selector

description: Requirements- BVLC PyCaffe<br><br>Download- Model Fine image selector :<br><br>How to useResNet-152; 6 outputs<br>#0 nail<br>#1 non-focused or tilted nail<br>#2 skin photo, not nail<br>#3 skin photo, not nail<br>#4 index photo, or EMR screenshot<br>#5 non-skin photo, general internet images<br>
DOI: 10.6084/m9.figshare.7931003.v1
title: FILES

description: nanomedicien
DOI: 10.17632/ndv43x8g7g
title: Mercury and TOC Data from Shatsky Rise core KEC, North Pacific

description: The dataset includes the THg, TOC, THg/TOC ratio, and Hg isotopes for core KEC and ODP Site 1208. The authigenic Fe and Mn content for core KEC is also provided to illustrate the diagenetic effect.
DOI: 10.17632/tjgj87yw78
title: Immature instars of three species of Rhodnius (Hemiptera: Re-duviidae: Triatominae): morphological and morphometric studies

description: This data is of geometric mophometric of the  Immature instars of three species of Rhodnius (Hemiptera: Re-duviidae: Triatominae): morphological and morphometric studies
DOI: 10.6084/m9.figshare.13160799.v1
title: Dataset Fig 5a,b

description: Underlying Image Data for Fig. 5a, 5b
DOI: 10.6084/m9.figshare.16743757.v1
title: Lupin

description: A flat csv file contaning all data for the labeled species, at the resolution of site-variety-year combinations. Wheat is split into three files as there are too many records. Barley is excluded for ethical reasons, available on request.
DOI: 10.6084/m9.figshare.29118509.v5
title: Diels-Alder reaction space for self-healing polymer

description: This dataset and checkpoint support the research presented in the paper *"Screening Thermally Reversible Diels-Alder Reactions for Self-Healing Polymers via Integrated Machine Learning and Reaction Profile Calculations"*, and includes high-throughput data related to the generation and analysis of Diels-Alder (DA) reactions. The reactions cover both synthetic diene-dienophile pairs and combinations derived from natural products, facilitating the study of key properties such as thermal responsiveness, reactivity, and reversibility. This dataset can support various research directions, including the design of self-healing polymers, modeling of reaction reversibility, exploration of reaction mechanisms, and development of machine learning models.
DOI: 10.17632/bkk6wzcbm8
title: Urban Morphology Ontology (UMO) 

description: Urban Morphology Ontology (UMO) is a way of reading the contemporary city, highlighting the components (‘concepts’ in the broader definition of a generic ontology) and the relationships among them. The components are defined as urban elements. The purpose of this interpretation is to define a set of entities, and the relations between them, that can be used to describe and to compose urban fabrics.
UMO offers a vocabulary of the domain composed by the urban objects and their properties; the knowledge of spatial and composition relationships defines the constraints that regulate the possibilities of combination of the single objects into urban fabrics. 
UMO implements four reference classes that map the hierarchical main morphological levels of objects:
Root class: Geometrical families. This class tries to divide the urban space elements starting from their intrinsic dimensional nature: lines (i.e. elements with a standard cross section, developed along a path, like the streets), surfaces (i.e. every open and non-covered space), volumes (i.e. every building over covered space). This class contains also a primary distinction between the public/private conditions (for the linear elements and the surfaces), and between the closed or open volumes.
Subclass 1: Functional families. In this class of the Urban Ontology there is a distinction among the main functional families of the elements, such as building, green etc.
Subclass 2: Architectural typologies. This class articulates the typological peculiarities of the entities, such as semi-detached building or office block etc.
Subclass 3: Distribution type / internal organisation. In this last class there are some information about the details of the structural schemes (e.g. single, double o multiple span) or about the internal organisation of the entities. This last class matches with the dimensional features, specified for every single element.
UMO implements five different types of relationships between class individuals:
•	hypernym-hyponym relationships (subclasses and superclasses);
•	holonym-meronym relationships;
•	pertinence relationships;
•	spatial relationships;
•	size relationships.
DOI: 10.17632/d45n5zkbh2
title: Data for: Ideology beyond partisanship. The behavior of judges in freedom of information law cases in Chile.
DOI: 10.17632/g6czhcpkdy
title: Supplementary Material for JAAD

description: Supplementary Material for Association between Rosacea and Cardiometabolic Disease: A Systematic Review and Meta-Analysis
DOI: 10.17632/v8yt3r8th2
title: Product Dataset

description: List of products with  the attributes, S.No, BrandName,Product ID,Product Name,Brand Desc,Product Size,Currancy,MRP,SellPrice,Discount,Category
DOI: 10.17632/t4f74wzyn4
title: CBCT-guided Adaptive Radiotherapy using Self-Supervised Sequential Domain

description: Adaptive radiotherapy (ART) is an advanced technology in modern cancer treatment that incorporates progressive changes in patient anatomy into active plan/dose adaption during the fractionated treatment. However, the clinical application relies on the accurate segmentation of cancer tumors on low-quality on-board images, which has posed challenges for both manually delineation and deep learning-based models.  In this paper, we propose a novel sequence transduction deep neural networks with attention mechanism to learn the shrinkage of the cancer tumor based on patients' weekly cone-beam computed tomography (CBCT). We design a self-supervised domain adaption (SDA) method to learn and adapt the rich textural and spatial features from pre-treatment high-quality computed tomography (CT) to CBCT modality in order to address the poor image quality and lack of labels. We also provide uncertainty estimation for sequential segmentation, which aids not only in the risk management of treatment planning but also in the calibration and reliability of the model. Our experimental results based on a clinical non-small cell lung cancer (NSCLC) dataset with six-teen patients and ninety-six longitudinal CBCTs show that our model properly learns weekly deformation of the tumor over time with an average dice score of 0.92 on the immediate next step, and is able to predict multiple steps (up to 5 weeks) for future patient treatments with an average dice score reduction of 0.05. By incorporating the tumor shrinkage predictions into a weekly re-planning strategy, our proposed method demonstrates a significant reduction in the risk of radiation-induced pneumonitis up to 35% while maintaining the high tumor control probability.

The code that supports the findings of the study is openly available in the repository,  patient data is available on request due to institutional restrictions.
DOI: 10.6084/m9.figshare.22233079.v1
title: EEG and IMU data

description: 60 EEG channels and 4 EOG channels were recorded at a sampling rate of 100 Hzfrom the Brain Products actiCap System.46<br> The electrodes were placed and labeled using a modified version of the 10-20 system5. Four posterior electrodes – TP9, TP10,47<br> PO9, PO10 – were reallocated as vertical and horizontal EOG sensors for the recognition and removal of eye movement/blink48<br> artifacts from the 60 EEG channels using an H∞ filter6. Electrodes FT9 and FT10 were also moved to the standard AFz and49<br> FCz locations respectively, and the ground and reference electrodes were then placed on the left and right ears. To help maintain50<br> low impedances, electrolytic gel was injected between each electrode and the subjects’ scalps. Impedances were tested and51<br> recorded before and after each session. The 3D spatial locations of all 64 electrodes were digitally scanned and recorded for52<br> most sessions (see Table 1) using the Brain Products CapTrak system; these specific coordinate locations could be used for53<br> subject- and session-specific EEG source localization and to ensure consistent electrode placement across sessions. Finally,54<br> an elastic mesh was fitted over the scalp and EEG cap to help keep the electrodes in place and reduce motion artifacts due to55<br> cable movement during the recording process. In addition to EEG data, each subject was fitted with inertial measurement units56<br> (Opals, APDM Inc.) in the center of each subject’s foreheads and on the back brace of the exoskeleton. T
DOI: 10.6084/m9.figshare.26406193.v3
title: Data files containing path distances and metrics of simulated paths

description: These .Rdata files are used in the "Wilcoxon signed rank test and associated figures.R" script to fit models and calculate path distances and other metrics described in "Wolverines use spatial memory to plan efficient routes through rugged terrain."
DOI: 10.6084/m9.figshare.27106051.v1
title: Dataset S2

description: Dataset S2: Total number of V1-V2 16S rRNA amplicons for cyanobacteria and photosynthetic eukaryotes using PhyloAssigner v6.166 and reference alignments and trees as previously described in (Vergin et al. 2013; Sudek et al. 2014; Choi et al. 2020).Year, Station, location and depth are shown for each sample. Note that Synechococcus Clades V/VI/VII could not be distriminated from each other with statistical support and therefore are presented as a combined number.
DOI: 10.17632/549d9g469w
title: HydroAPP

description: HydroAPP is a tool that can improve the 2D hydrodynamic simulations because it allows for robust evaluation of the performance of 2D simulation by comparing against measurements. This calibration process is often complicated and subjective, but HydroAPP simplifies the process and objectively quantifies the simulation quality. The code allows the user to test different simulations and produces graphs and tabular results for posterior analyses.