cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20359080.v1
title: An investigation of physicians' prescribing behaviors related to antidiabetic agents for Type 2 diabetes mellitus patients and associated factors in Taiwan

description: This study aimed to examine the factors that may influence physicians’ choice of antidiabetic agents. In addition, we investigated physicians’ decision-making process and treatment of T2DM patients with chronic kidney disease (CKD). Finally, we wanted to determine whether physicians knew the latest recommendations for T2DM treatment. The study was conducted as a cross-sectional survey using an online self-administered questionnaire to collect data from physicians in Taiwan. We enrolled licensed physicians who worked in hospitals or clinics with an average monthly T2DM patient load of 100 patients. Descriptive statistics, the independent samples <i>t</i>-test, and the Chi-square test were used for data analysis. Moreover, the association was examined between respondents’ demographics and the proportion of respondents who answered each T2DM treatment question correctly. A total of 986 invitations were sent out, and 324 completed questionnaires were received. The most important factors that may influence physicians’ choice of antidiabetic agents in each factor category were major comorbidities of patients, coverage of insurance, guideline recommendations, cardiovascular disease benefit, and whether a drug is the brand-name drug, respectively. When choosing second-line antidiabetic agents for T2DM patients with CKD, the most common reasons for doing so were recommendations of clinical guidelines (83.6%) and patients' renal function (59.6%) while SGLT2is were respondents’ most commonly chosen treatment. Respondents were more familiar with ADA recommendations for patients with certain major comorbidities than with the drugs’ labeled indications. Moreover, physicians who were younger, female, specialty in diabetes, or working in medical centers were more likely to give correct answers to certain questions about ADA guidelines (all <i>p</i> &lt; .05). This study provides a better understanding of the influential factors, treatment choices, and reasoning related to physicians’ prescribing of antidiabetic agents in Taiwan. In addition, knowledge gaps in various physician groups were identified.
DOI: 10.17632/hk84bvc4c6.1
title: Financialization

description: Annual data of non-financial companies listed on China's stock exchanges from 2008 to 2022 . （Exclude ST, PT, delisting, missing financial data and samples of insolvent enterprises）；
DOI: 10.5258/soton/d2969
title: Dataset for: Improved tactile speech perception using audio-to-tactile sensory substitution with formant frequency focusing

description: This dataset supports the publication:
AUTHORS: Mark Fletcher, Esma Akis, Carl Verschuur, & Sam Perry
TITLE: Improved tactile speech perception using audio-to-tactile sensory substitution with formant frequency focusing
JOURNAL: Scientific Reports
This dataset contains a CSV file with the participant number (matching the number used for the data presented in the published article associated with this dataset), dominant hand (left/right), wrist height, width, and circumference (mm), 31.5 Hz threshold and 125 Hz vibro-tactile detection threshold at the fingertip (ms/2), gender, age, and percentage correct for phoneme discrimination in each condition. The header name for each condition shows the frequency focusing method, the phoneme type (vowel or consonant), and the talker gender.

Date of data collection: 01/01/2023 - 01/06/2023

All data was collected at the University of Southampton, U.K.
DOI: 10.6084/m9.figshare.19310580
title: Potential targets for evaluation of sugarcane yellow leaf virus resistance in sugarcane cultivars: <i>in silico</i> sugarcane miRNA and target network prediction

description: The Sugarcane yellow leaf virus (SCYLV) is associated with sugarcane yellow leaf disease (SCYLD) and is considered to be the most economically deleterious emerging pathogen that represents a potential threat and danger to sugarcane cultivation in China. Over the last two decades, high genetic diversity in the SCYLV genotypes was observed worldwide, with a greater chance of YLD incidence for sugarcane injury. SCYLV infection has significantly damaged its economic traits and is responsible for substantial losses in biomass production in sugarcane cultivars. This study aims to identify and analyse sugarcane microRNAs (miRNAs) as therapeutic targets against SCYLV using plant miRNA prediction tools. Mature sugarcane miRNAs are retrieved and are used for hybridisation of the SCYLV. A total of seven common sugarcane miRNAs were selected based on consensus genomic positions. The biologically significant, top ranked ssp-miR528 was consensually predicted to have a potentially unique hybridisation site at nucleotide position 4162 for targeting the ORF5 of the SCYLV genome; this was predicted by all the algorithms used in this study. Then, the miRNA–mRNA regulatory network was generated using the Circos algorithm, which was used to predict novel targets. There are no acceptable commercial SCYLV-resistant sugarcane varieties available at present. Therefore, the predicted biological data offer valuable evidence for the generation of SCYLV-resistant sugarcane plants.
DOI: 10.6084/m9.figshare.19310580.v1
title: Potential targets for evaluation of sugarcane yellow leaf virus resistance in sugarcane cultivars: <i>in silico</i> sugarcane miRNA and target network prediction

description: The Sugarcane yellow leaf virus (SCYLV) is associated with sugarcane yellow leaf disease (SCYLD) and is considered to be the most economically deleterious emerging pathogen that represents a potential threat and danger to sugarcane cultivation in China. Over the last two decades, high genetic diversity in the SCYLV genotypes was observed worldwide, with a greater chance of YLD incidence for sugarcane injury. SCYLV infection has significantly damaged its economic traits and is responsible for substantial losses in biomass production in sugarcane cultivars. This study aims to identify and analyse sugarcane microRNAs (miRNAs) as therapeutic targets against SCYLV using plant miRNA prediction tools. Mature sugarcane miRNAs are retrieved and are used for hybridisation of the SCYLV. A total of seven common sugarcane miRNAs were selected based on consensus genomic positions. The biologically significant, top ranked ssp-miR528 was consensually predicted to have a potentially unique hybridisation site at nucleotide position 4162 for targeting the ORF5 of the SCYLV genome; this was predicted by all the algorithms used in this study. Then, the miRNA–mRNA regulatory network was generated using the Circos algorithm, which was used to predict novel targets. There are no acceptable commercial SCYLV-resistant sugarcane varieties available at present. Therefore, the predicted biological data offer valuable evidence for the generation of SCYLV-resistant sugarcane plants.
DOI: 10.6084/m9.figshare.21932059
title: A strong and reversible adhesive fibrillar surface based on an advanced composite with high strength and strong adhesion

description: A material-structure integrated design method is proposed in this paper, with which micropillar and microwedge arrayed surfaces are fabricated based on a novel nanoparticle-reinforced silicone rubber composite (NRSRC) with high mechanical strength and strong surface adhesion. It is found that the micropillar-arrayed surface and the microwedge-arrayed surface show a normal adhesive strength of 50.9 kPa and a shear adhesive strength of 137.3 kPa, respectively, which are much higher than those of previously reported adhesive surfaces made by pure soft polymers. Furthermore, the microwedge-arrayed surface shows not only strong and stable adhesion on rough and smooth substrates but also an obvious anisotropy in the adhesion property. The latter consequently leads to an easy control of the attachment/detachment switch, which is evidenced by a mechanical gripper with a microwedged surface. Therefore, firmly picking up and easily releasing a heavy glass plate can be realized. All these results demonstrate the apparent advantages of the present composite-based fibrillar surfaces in achieving reliable and reversible adhesion and should have promising applications for manufacturing advanced adhesive devices, such as mechanical fixtures, portable climbing equipment and space robots.
DOI: 10.6084/m9.figshare.21932059.v1
title: A strong and reversible adhesive fibrillar surface based on an advanced composite with high strength and strong adhesion

description: A material-structure integrated design method is proposed in this paper, with which micropillar and microwedge arrayed surfaces are fabricated based on a novel nanoparticle-reinforced silicone rubber composite (NRSRC) with high mechanical strength and strong surface adhesion. It is found that the micropillar-arrayed surface and the microwedge-arrayed surface show a normal adhesive strength of 50.9 kPa and a shear adhesive strength of 137.3 kPa, respectively, which are much higher than those of previously reported adhesive surfaces made by pure soft polymers. Furthermore, the microwedge-arrayed surface shows not only strong and stable adhesion on rough and smooth substrates but also an obvious anisotropy in the adhesion property. The latter consequently leads to an easy control of the attachment/detachment switch, which is evidenced by a mechanical gripper with a microwedged surface. Therefore, firmly picking up and easily releasing a heavy glass plate can be realized. All these results demonstrate the apparent advantages of the present composite-based fibrillar surfaces in achieving reliable and reversible adhesion and should have promising applications for manufacturing advanced adhesive devices, such as mechanical fixtures, portable climbing equipment and space robots.
DOI: 10.6084/m9.figshare.12494879
title: Additional file 10 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 10. The reannotation of ER2566 genome.
DOI: 10.6084/m9.figshare.12494879.v1
title: Additional file 10 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 10. The reannotation of ER2566 genome.
DOI: 10.6084/m9.figshare.24989361
title: The relationship between perceived friendship and proximity networks among Tanzanian Hadza

description: Data used in Fedurek et al. 2024 paper :"The relationship between perceived friendship and proximity networks among Tanzanian Hadza" in Hunter Gatherer Research. Attached are the most up-to-data proximity and friendship nominations data collected from 3 different Hadza camps.
DOI: 10.6084/m9.figshare.12494897
title: Additional file 1 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 1: Table S1. The list of the ruled-out genes in the reannotation.
DOI: 10.6084/m9.figshare.12494897.v1
title: Additional file 1 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 1: Table S1. The list of the ruled-out genes in the reannotation.
DOI: 10.6084/m9.figshare.22456373
title: Biochar-derived dissolved organic matter (BDOM) and its influence on soil microbial community composition, function, and activity: A review

description: Biochar-derived dissolved organic matter (BDOM) plays key roles in soil ecosystem by affecting soil physicochemical and biological properties and supplying nutrients to soil microbes. It can either enhance or suppress the growth of certain soil microorganisms, depending on its composition and content of labile organic compounds. This review aims to discuss and summarize the role of BDOM in modifying soil microbial functioning, microbial community structure, and enzymatic activity. We mainly focus on the role of BDOM as a function of its concentration, type of feedstock biomass, and pyrolysis temperature (PT). Results show that saw dust- and manure-based biochars produce higher BDOM concentrations than straw-, bone-, and sludge-based biochars. The types of feedstock biomass and its PT determine BDOM characteristics and its interaction with soil microbial communities. Plant-derived biochar with pyrolysis temperature ≤300 °C often results in a more aliphatic BDOM than that with pyrolysis temperature ≥500 °C, which yields a more aromatic BDOM. BDOM of plant biochar contains higher specific ultraviolet absorbance (SUVA) and humification index (HIX) than that of manure biochar. The SUVA and HIX of BDOM positively correlate (<i>R</i><sup>2</sup>=0.68–0.96) with the content of total fatty acid methyl esters, but negatively correlate with the abundances of actinomycetes, arbuscular mycorrhizae, and fungal communities. However, the environmental fate of BDOM in biochar amended soil requires long-term experiment, both in laboratory and field scales, to provide a full understating of BDOM interaction with soil organic matter and microorganisms and help to tailor a safe utilization of biochar in agroecosystems.
DOI: 10.6084/m9.figshare.22456373.v1
title: Biochar-derived dissolved organic matter (BDOM) and its influence on soil microbial community composition, function, and activity: A review

description: Biochar-derived dissolved organic matter (BDOM) plays key roles in soil ecosystem by affecting soil physicochemical and biological properties and supplying nutrients to soil microbes. It can either enhance or suppress the growth of certain soil microorganisms, depending on its composition and content of labile organic compounds. This review aims to discuss and summarize the role of BDOM in modifying soil microbial functioning, microbial community structure, and enzymatic activity. We mainly focus on the role of BDOM as a function of its concentration, type of feedstock biomass, and pyrolysis temperature (PT). Results show that saw dust- and manure-based biochars produce higher BDOM concentrations than straw-, bone-, and sludge-based biochars. The types of feedstock biomass and its PT determine BDOM characteristics and its interaction with soil microbial communities. Plant-derived biochar with pyrolysis temperature ≤300 °C often results in a more aliphatic BDOM than that with pyrolysis temperature ≥500 °C, which yields a more aromatic BDOM. BDOM of plant biochar contains higher specific ultraviolet absorbance (SUVA) and humification index (HIX) than that of manure biochar. The SUVA and HIX of BDOM positively correlate (<i>R</i><sup>2</sup>=0.68–0.96) with the content of total fatty acid methyl esters, but negatively correlate with the abundances of actinomycetes, arbuscular mycorrhizae, and fungal communities. However, the environmental fate of BDOM in biochar amended soil requires long-term experiment, both in laboratory and field scales, to provide a full understating of BDOM interaction with soil organic matter and microorganisms and help to tailor a safe utilization of biochar in agroecosystems.
DOI: 10.6084/m9.figshare.12494903
title: Additional file 2 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 2: Table S2. The list of newly added protein-coding in the reannotation.
DOI: 10.6084/m9.figshare.12494903.v1
title: Additional file 2 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 2: Table S2. The list of newly added protein-coding in the reannotation.
DOI: 10.6084/m9.figshare.12494906
title: Additional file 3 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 3: Table S3. The list of complete CDSs in the reannotation.
DOI: 10.6084/m9.figshare.12494906.v1
title: Additional file 3 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 3: Table S3. The list of complete CDSs in the reannotation.
DOI: 10.6084/m9.figshare.12494912
title: Additional file 4 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 4: Table S4. Comparison with BL21(DE3) and ER2566 annotation.
DOI: 10.6084/m9.figshare.12494912.v1
title: Additional file 4 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 4: Table S4. Comparison with BL21(DE3) and ER2566 annotation.
DOI: 10.6084/m9.figshare.12494915
title: Additional file 5 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 5. An integrated proteogenomics search database of ER2566 strain.
DOI: 10.6084/m9.figshare.12494915.v1
title: Additional file 5 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 5. An integrated proteogenomics search database of ER2566 strain.
DOI: 10.6084/m9.figshare.12494918
title: Additional file 6 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 6: Table S5. The list of newly added miscellaneous ncRNAs in the reannotation.
DOI: 10.6084/m9.figshare.12494918.v1
title: Additional file 6 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 6: Table S5. The list of newly added miscellaneous ncRNAs in the reannotation.
DOI: 10.6084/m9.figshare.12494927
title: Additional file 7 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 7: Table S6. The transcription level of the newly added ncRNAs.
DOI: 10.6084/m9.figshare.12494927.v1
title: Additional file 7 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 7: Table S6. The transcription level of the newly added ncRNAs.
DOI: 10.6084/m9.figshare.17213526
title: An insight into SARS-CoV-2 membrane protein interaction with spike, envelope, and nucleocapsid proteins

description: Intraviral protein–protein interactions are crucial for replication, pathogenicity, and viral assembly. Among these, virus assembly is a critical step as it regulates the arrangements of viral structural proteins and helps in the encapsulation of genomic material. SARS-CoV-2 structural proteins play an essential role in the self-rearrangement, RNA encapsulation, and mature virus particle formation. In SARS-CoV, the membrane protein interacts with the envelope and spike protein in Endoplasmic Reticulum Golgi Intermediate Complex (ERGIC) to form an assembly in the lipid bilayer, followed by membrane-ribonucleoprotein (nucleocapsid) interaction. In this study, we tried to understand the interaction of membrane protein’s interaction with envelope, spike, and nucleocapsid proteins using protein–protein docking. Further, simulation studies were performed up to 100 ns to examine the stability of protein–protein complexes of Membrane-Envelope, Membrane-Spike, and Membrane-Nucleocapsid proteins. Prime MM-GBSA showed high binding energy calculations for the simulated structures than the docked complex. The interactions identified in our study will be of great importance, as it provides valuable insight into the protein–protein complex, which could be the potential drug targets for future studies. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.17213526.v1
title: An insight into SARS-CoV-2 membrane protein interaction with spike, envelope, and nucleocapsid proteins

description: Intraviral protein–protein interactions are crucial for replication, pathogenicity, and viral assembly. Among these, virus assembly is a critical step as it regulates the arrangements of viral structural proteins and helps in the encapsulation of genomic material. SARS-CoV-2 structural proteins play an essential role in the self-rearrangement, RNA encapsulation, and mature virus particle formation. In SARS-CoV, the membrane protein interacts with the envelope and spike protein in Endoplasmic Reticulum Golgi Intermediate Complex (ERGIC) to form an assembly in the lipid bilayer, followed by membrane-ribonucleoprotein (nucleocapsid) interaction. In this study, we tried to understand the interaction of membrane protein’s interaction with envelope, spike, and nucleocapsid proteins using protein–protein docking. Further, simulation studies were performed up to 100 ns to examine the stability of protein–protein complexes of Membrane-Envelope, Membrane-Spike, and Membrane-Nucleocapsid proteins. Prime MM-GBSA showed high binding energy calculations for the simulated structures than the docked complex. The interactions identified in our study will be of great importance, as it provides valuable insight into the protein–protein complex, which could be the potential drug targets for future studies. Communicated by Ramaswamy H. Sarma
DOI: 10.15470/6yne3u
title: GYPSUM LICHENS: a global data set of lichen species from gypsum ecosystems

description: Lichens are significant components of the Biological Soil Crust (BSC) communities in gypsum ecosystems and are involved in several processes related to ecosystem functioning. Although numerous studies centered on lichen taxonomy and ecology have been performed in these habitats, global information about the lichen species from gypsum ecosystems or their distributional ranges at a global scale is missing. Thus, a global data set of lichen species growing on gypsum has been compiled. 

A total of 321 studies were finally retained for the review. This data set is composed of 6114 specimen records, belonging to 336 lichen species from 26 countries throughout the World. Spain and Germany hosted the highest number of species (160 and 114 species respectively). Outside the European continent, only a few countries had a significant number of species: Morocco (46), United States (42), and Iran (37). Remarkably, countries from the southern hemisphere (i.e. Australia, Chile, Namibia, and South Africa) showed a low number of studies from gypsum lands. The number of records per country showed a similar pattern as the species number, having Spain and Germany the highest number of records (3863 and 1075 respectively).

Thirty one families are present in the data set. Teloschistaceae (56 species), Verrucariaceae (38 species), and Cladoniaceae (37 species) are the most represented families showing the highest number of species. Regarding the number of records, Cladoniaceae (1267 records), Teloschistaceae (972 records), and Psoraceae (539 records) are the most abundant families. Psora decipiens (Psoraceae) and Squamarina lentigera (Cladoniaceae) are the most widespread species concerning the number of countries in which the species were present, and the most abundant regarding the total number of records.
DOI: 10.6084/m9.figshare.12494933
title: Additional file 8 of Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions

description: Additional file 8: Table S7. The top 50 the highly expressed genes.