cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4j0zpc8m8
title: iValiD-TB: A fully characterized Mycobacterium tuberculosis dataset for antimicrobial resistance bioinformatics workflow validations

description: For clinical assay validations, well-characterized samples are essential
 for assessing methodology sensitivity and specificity. To support the
 community in the development of clinical next-generation sequencing assays
 for Mycobacterium tuberculosis, we released a comprehensive dataset of 50
 whole genome sequences from characterized strains, complete with drug
 susceptibility and mutation profiles.
description: # iValiD-TB: A fully characterized Mycobacterium tuberculosis dataset for
 antimicrobial resistance bioinformatics workflow validations
 [https://doi.org/10.5061/dryad.4j0zpc8m8](https://doi.org/10.5061/dryad.4j0zpc8m8) We have assembled a comprehensive dataset of 50 well-characterized whole genome sequences (WGS) from *Mycobacterium tuberculosis* strains to aid in the development of clinical assays for this pathogen. This dataset includes complete whole genome sequences paired-end read sets obtained through Illumina MiSeq sequencing, along with detailed profiles of drug susceptibility patterns and mutations known to be associated with antimicrobial resistance (AR) to nine MTB drugs. This dataset has been curated to be inclusive of a broad range of lineage diversity, drug susceptibility profiles, and mutation types. The sequence reads dataset has been made available at the NCBI Read Archive under Bioproject PRJNA980174. ## Description of the data and file structure The metadata, resistance profile, and antimicrobial resistance profiles for the 50 individual samples have been deposited in this repository as report cards. The report carts are available in 3 formats: plain text files, Word documents, and Excel sheets. ## Changelogs: 10/08/25: A mistake was discover on the report card of sample S27. In the final interpretation, the report card was showing a inhA_Val21Ala mutation while in fact, the correct mutation is inhA_Ile21Ala. The S27 report cards have been corrected.
DOI: 10.15468/dl.c3h8ac
title: Occurrence Download

description: A dataset containing 406 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caltoris kumara"
 ]
}

 The dataset includes 406 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003992-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.b8gtht7mk
title: Data for: Biological Flora of Britain and Ireland: Silene uniflora

description: These data result from an investigation of the germination biology of
 seeds of Silene uniflora (Sea Campion) in response to temperature and
 salinity. They are summarised in Figure 7 and interpreted in section 8.4
 of the account of Silene uniflora in the series Biological Flora of
 Britain and Ireland, published in the Journal of Ecology.
description: The data comprise the results of a series of tests carried out on
 filter paper in five replicate Petri dishes (sealed with Parafilm), with
 20 seeds  per replicate dish. Dishes were kept in incubators with
 illumination from warm-white fluorescent tubes for 12h/day and monitored
 for up to 47 days. The germination tests examined responses to a range of
 constant temperatures (5, 10, 15 and 20 °C) and salinities (0, 50, 100 and
 200 mM NaCl). These are raw data and have not been
 processed. They are presented as an Excel spreadsheet.
description: # Data for: Biological Flora of Britain & Ireland: Silene uniflora
 [https://doi.org/10.5061/dryad.b8gtht7mk](https://doi.org/10.5061/dryad.b8gtht7mk) Germination tests carried out on seed of *Silene uniflora* after 6 months’ dry storage at room temperature. The tests were carried out on filter paper in five replicate Petri dishes (sealed with Parafilm), with 20 seeds per replicate dish. Dishes were kept in incubators with illumination from warm-white fluorescent tubes for 12h/day and monitored for up to 47 days. The response to temperature was tested at 5, 10, 15 and 20 °C. The response to salinity (0, 50, 100 and 200 mM NaCl ) was tested at 15 and 20°C. The data are presented as a single Excel spreadsheet book. Sheet 1 is an explanation, sheet 2 contains the temperature response data, sheet 3 contains the salinity response at 15°C data, and sheet 4 contains salinity response at 20°C data. The columns represent cumulative numbers of germinated seeds in treatments (grouped by their replicates). The rows represent days from the start of the experiment. All have descriptive headings/labels. This work was carried out in support of a review of this species in the series *Biological Flora of Britain and Ireland*. It might be used for making comparisons of germination biology with other species, particularly maritime ones.
DOI: 10.5061/dryad.v15dv424j
title: Investigating the impact of environmental feedback on the optional prisoner's dilemma for insights into cyclic dominance and evolution of cooperation

description: This study incorporates environmental feedback into the optional
 prisoner's dilemma and rock-paper-scissors games to examine the
 mutual influence of eco-evolutionary outcomes and strategy dynamics. A
 novel game-theoretic model is developed that integrates the optional
 prisoner's dilemma and rock-paper-scissors games by incorporating an
 environmental state variable. By adjusting feedback parameters, chaos,
 oscillations and coexistence are observed that surpass the usual outcomes
 of social dilemmas when the environment transitions between depleted and
 replenished states. Defection is no longer advantageous in evolution;
 cooperation, abstention, and cyclic dominance arise. The observed
 transitions align with natural economics, ecology, and sociology
 phenomena. The inclusion of abstention options and environmental feedback
 has a significant impact on collective outcomes when compared to
 conventional games. This has important implications for studying
 adaptation and decision-making in situations with ecological constraints.
description: # Investigating the impact of environmental feedback on the optional
 prisoner's dilemma for insights into cyclic dominance and evolution
 of cooperation ## CONSOLE APPLICATION : Project Overview This file
 contains a summary of what you will find in each of the files that make up
 your application. We uploaded two data files:  1. The code file
 (RPS_ENV_Code.txt) involves performing numerical simulations using Python.
 2. Two tabular data files (sample). ## Requirements * COLAB Python ##
 Output File Two sample Excel files, which were used to create the line
 graphs (Figure 1(a) and Figure 1(b)), have been uploaded. Using the Python
 code provided in the Dryad system, xlsx files can be generated from the
 data. In each xlsx file, each column represents various parameter values.
 The first column represents the data numbers. The second column present
 time as "Time".The following three columns represent the values
 for "Cooperator", "Defector" and "Loner".
DOI: 10.5061/dryad.xsj3tx9pv
title: Data from: Nanotube structure of AsPS4–xSex (x = 0, 1)

description: Single-wall nanotubes of isostructural AsPS4−xSex (x = 0, 1) are grown
 from solid-state reaction of stoichiometric amounts of the elements. The
 structure of AsPS4 was determined using single-crystal X-ray diffraction
 and refined in space group P1. The infinite, single-walled AsPS4 nanotubes
 have an outer diameter of ≈1.1 nm and are built of corner-sharing PS4
 tetrahedra and AsS3 trigonal pyramids. Each nanotube is nearly hexagonal,
 but the ≈3.4 Å distance between S atoms on adjacent nanotubes allows them
 to easily slide past one another, resulting in the loss of
 long-range order. Substituting S with Se disrupted the crystallization of
 the nanotubes, resulting in amorphous products that precluded the
 determination of the structure for AsPS3Se. 31P solid-state NMR
 spectroscopy indicated a single unique tetrahedral P environment in AsPS4
 and five different P environments all with different degrees of Se
 substitution in AsPS3Se. Optical absorption spectroscopy revealed an
 energy band gap of 2.7 to 2.4 eV for AsPS4 and AsPS3Se, respectively.
 Individual AsPS4 microfibers showed a bulk conductivity of 3.2 × 10−6 S/cm
 and a negative photoconductivity effect under the illumination of light
 (3.06 eV) in ambient conditions. Thus, intrinsic conductivity
 originates from hopping through empty trap states along the length of the
 AsPS4 nanotubes.
description: The photocurrent measurements were collected on AsPS4 microfibers
 of diameters in the range of 10−20 μm dispersed on a glass slide and
 contacted with tungsten probe tips for electrical measurements under
 ambient conditions. The detailed methods is described in the publication
 https://pubs.acs.org/doi/10.1021/acs.inorgchem.3c03952
description: # Data from: Nanotube structure of AsPS4−xSex (x = 0, 1)
 [https://doi.org/10.5061/dryad.xsj3tx9pv](https://doi.org/10.5061/dryad.xsj3tx9pv) ## Description of the data and file structure Two text files are uploaded for current-voltage characteristics in dark (Dark IV.txt) and under illumination (Light IV.txt). An optical image of the device is also uploaded. The collection of photocurrent data was supported by Northwestern’s MRSEC program (NSF DMR-2308691) which requires sharing raw data. So, this data only includes the experimental work supported by this grant. ## Sharing/Access information Links to other publicly accessible locations of the data: * [https://doi.org/10.1021/acs.inorgchem.3c03952](https://doi.org/10.1021/acs.inorgchem.3c03952)
DOI: 10.15468/dl.p2p65g
title: Occurrence Download

description: A dataset containing 7196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-125.3703 31.1061,-103.03435 31.1061,-103.03435 43.00285,-125.3703 43.00285,-125.3703 31.1061))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cypseloides niger",
 "Year 1970-2020"
 ]
}

 The dataset includes 7196 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003993-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.pzgmsbcw4
title: Data from: Individual differences in sociocognitive traits in semi-free-ranging rhesus monkeys (Macaca mulatta)

description: Characterizing individual differences in cognition is crucial for
 understanding the evolution of cognition as well as to test the biological
 consequences of different cognitive traits. Here, we harnessed the
 strengths of a uniquely large, naturally-living primate population at the
 Cayo Santiago Biological Field Station to characterized individual
 differences in rhesus monkey performance across two social cognitive
 tasks. A total of n = 204 semi-free-ranging adult rhesus monkeys
 participated in a data collection procedure, where we aimed to test
 individuals on both tasks at two time-points that were one year apart. In
 the socioemotional responses task, we assessed monkeys' attention to
 conspecific photographs with neutral versus negative emotional
 expressions. We found that monkeys showed overall declines in interest in
 conspecific photographs with age, but relative increases in attention to
 threat stimuli specifically, and further that these responses exhibited
 long-term stability across repeated testing. In the gaze following task we
 assessed monkeys' propensity to co-orient with an experimenter. Here,
 we found no evidence for age-related change in responses, and responses
 showed only limited repeatability over time. Finally, we found some
 evidence for common individual variation for performance across the tasks:
 monkeys that showed greater interest in conspecific photographs were more
 likely to follow a human's gaze. These results show how studies of
 comparative cognitive development and aging can provide insights into the
 evolution of cognition, and identify core primate social cognitive traits
 that may be related across and within individuals.
description: See detailed methods in the manuscript. 
description: # Data from: Individual differences in sociocognitive traits in
 semi-free-ranging rhesus monkeys (Macaca mulatta)
 [https://doi.org/10.5061/dryad.pzgmsbcw4](https://doi.org/10.5061/dryad.pzgmsbcw4) Study Authors: Alexis A. Diaz, Raisa Hernández-Pacheco, & Alexandra G. Rosati Correspondence to [rosati@umich.edu](mailto:rosati@umich.edu) or [alexisdz@stanford.edu](mailto:alexisdz@stanford.edu) ## Description of the data and file structure This data set consists of two data files (.xlsx format) for the different components of the data reported in this work. For each file, there is a key tab in the file defining each variable reported in the main data tab. The specific files are: 1. Diaz et al Rhesus Socioemotional Responses: This file has trial-level data from the socioemotional responses task across two years. 2. Diaz et al Rhesus Gaze Following: This file has trial-level data from the gaze following task across two years.
DOI: 10.15468/dl.3w2z9f
title: Occurrence Download

description: A dataset containing 188757 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((34 34, 34 75, -15 75, -15 34, 34 34))",
 "SpeciesKey is one of (Bombus ruderarius, Bombus humilis, Bombus mucidus, Bombus pyrenaeus, Bombus pyrrhopygus, Bombus mesomelas, Bombus perezi, Bombus inexspectatus, Bombus consobrinus, Bombus sporadicus, Bombus hypnorum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 188757 records from 438 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003909-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.280gb5mz1
title: Data from: Status-dependent metabolic effects of social interactions in a group-living fish

description: Social interactions can sometimes be a source of stress, but social
 companions can also ameliorate and buffer against stress. Stress and
 metabolism are closely linked, but the degree to which social companions
 modulate metabolic responses during stressful situations—and whether such
 effects differ depending on social rank—is poorly understood. To
 investigate this question, we studied Neolamprologus pulcher, a
 group-living cichlid fish endemic to Lake Tanganyika, and measured the
 metabolic responses of dominant and subordinate individuals when they were
 either visible or concealed from one another. When individuals could see
 each other, subordinates had lower maximum metabolic rates and tended to
 take longer to recover following an exhaustive chase compared to
 dominants. In contrast, metabolic responses of dominants and subordinates
 did not differ when individuals could not see one another. These findings
 suggest that the presence of a dominant individual has negative metabolic
 consequences for subordinates, even in stable social groups with strong
 prosocial relationships.
description: Data was collected and processed via intermittent flow
 respirometry with Neolamprologus pulcher.
description: # **Data from: Status-dependent metabolic effects of social interactions
 in a group-living fish**
 **[https://doi.org/10.5061/dryad.280gb5mz1](https://doi.org/10.5061/dryad.280gb5mz1)** Morin-Metabolic_Data.csv contains all data used for statistical analysis and figure creation. Morin-Analysis_Figure_Script.R contains the R script used to analyse the data and build all graphical figures. ## **Data in .csv** Data analysis used non-size-adjusted measurements of metabolic traits. For data visualisation, log-transformed metabolic trait values were size-adjusted (denoted by adj_) to the mean body mass of all fish tested (6.48 g). **Units:** * Masses are presented in grams (g) * Oxygen consumption rates and aerobic scopes are presented in µmol O₂ h⁻¹ * Excess post-exercise oxygen consumptions (EPOC) are presented in µmol O₂ * Times are presented in minutes (min) ## **Abbreviations used in .csv (left to right):** **P:** pair **NP:** *Neolamprologus pulcher* **rest_routine_stim:** stimulus (Social or Isolation) during first 48 h **MO2:** oxygen consumption rates (MO₂) **adj_**: size-adjusted to mean body mass **recovery_stim:** stimulus (Social or Isolation) during 6 h recovery **max_MO2:** maximum MO₂ **EPOC:** Excess post-exercise oxygen consumptions **time_to_recovery_10p_routine:** recovery to within 10% of routine MO₂ **time_to_recovery_50p_AS:** recovery to 50% of aerobic scope ## **R Script** The R script includes all code used for statistical analyses and figure building. Informative headings and annotations can be found throughout the script, denoted by # symbols.
DOI: 10.15468/dl.avc5pa
title: Occurrence Download

description: A dataset containing 125075 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is European Green Crab surveys - DFO Pacific"
 ]
}

 The dataset includes 125075 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003986-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14655570
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.25934/pr00012564.0
title: Available datapackage for study 'A Community-Led Approach to Enhance COVID-19 Testing Among Vulnerable Latinos'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5061/dryad.sxksn03b3
title: Wildland fire PM2.5 modeled estimates for the US from 2008-2018

description: This dataset includes daily modeled wildland fire PM2.5 concentrations for
 2008-2018 for the state of California at a 12-km grid spatial resolution,
 estimated using the U.S. EPA’s Community Multiscale Air Quality (CMAQ) (v.
 5.0.1- 5.3) modeling system. These wildland fire emissions estimates
 (which include wildfires and prescribed burns [but exclude agricultural
 burns]) incorporate multiple sources of fire activity. SMARTFIRE2 was used
 to reconcile the sources of fire activity data. Fuel consumption was
 calculated using the U.S. Forest Service’s CONSUME ver. 3.0 fuel
 consumption model and the Fuel Characteristic Classification System (FCCS)
 fuel-loading database in the BlueSky Framework. Emission factors were
 taken from the Fire Emission Production Simulator (FEPS) model. Non-fire
 emissions sources are from the National Emissions Inventory (NEI). The
 model was run with all emissions (fire and non-fire sources) and again
 without fires. The calculated difference between these simulations (‘all
 sources PM2.5’ and ‘non-fire PM2.5’) isolates the fire contribution, or
 ‘fire-only PM2.5’, which is the dataset provided here. 
description: The data have been processed from .ncf files into .tif files.
 Data were developed by Joseph Wilkins, Howard University. 
description: # Wildland fire PM2.5 modeled estimates for the US from 2008-2018
 [https://doi.org/10.5061/dryad.sxksn03b3](https://doi.org/10.5061/dryad.sxksn03b3) ## Description of the data and file structure These are raster .tif files with daily wildland fire PM2.5 concentrations across the United States CMAQ grid. There is one file included for each year. The grid changes from the 12US1 domain to the 12US2 domain starting in the year 2013.
DOI: 10.21223/p3/jddjwa
title: Dataset for: Catalogue-Based Morphological and Agronomic Characterization of Native Potatoes in Paucartambo, Cusco, Peru

description: During 2024 and 2025, a continuous participatory process was implemented in the province of Paucartambo (Cusco, Peru), aimed at the monitoring and integrated conservation of agrobiodiversity, with a particular focus on native potato varieties maintained within highland smallholder farming systems. Through field evaluations conducted over two consecutive agricultural seasons, and in coordination with farmer custodians from localities such as Jailo, Cochachochayocc, Huancarani, and Totorani, among others, a total of 421 native potato varieties were characterised. Morphological characterisation was carried out through participatory field sessions using standardised descriptors developed by the International Potato Center (CIP), assessing traits related to plant architecture, leaves, stems, flowering, pigmentation, fruiting, and tuber morphology. In addition, productive, physiological, and nutritional variables were recorded, together with qualitative information derived from local knowledge, including culinary uses, cooking time, perceived tolerance to climatic stresses, resistance to late blight, varietal category, perceived age, and perceived abundance. The process actively involved farmer custodians and local stakeholders, strengthening knowledge co-production and generating a systematic photographic record that supports the development of a local catalogue of native potato varieties.