cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23078547.v1
title: Supplementary Database from Multivariate mapping of ontogeny, taphonomy and phylogeny to reconstruct problematic fossil taxa

description: Excel file including coding matrices, NMDS scores, and PCOA values and vectors
DOI: 10.6084/m9.figshare.23078550
title: Nexus File (Coding 2) from Multivariate mapping of ontogeny, taphonomy and phylogeny to reconstruct problematic fossil taxa

description: Nexus file for all taxa, using coding style 2
DOI: 10.6084/m9.figshare.23078550.v1
title: Nexus File (Coding 2) from Multivariate mapping of ontogeny, taphonomy and phylogeny to reconstruct problematic fossil taxa

description: Nexus file for all taxa, using coding style 2
DOI: 10.6084/m9.figshare.23078556
title: Nexus File (Coding 1) from Multivariate mapping of ontogeny, taphonomy and phylogeny to reconstruct problematic fossil taxa

description: Nexus file for all taxa, using coding style 1
DOI: 10.6084/m9.figshare.23078556.v1
title: Nexus File (Coding 1) from Multivariate mapping of ontogeny, taphonomy and phylogeny to reconstruct problematic fossil taxa

description: Nexus file for all taxa, using coding style 1
DOI: 10.6084/m9.figshare.23078559
title: R File from Multivariate mapping of ontogeny, taphonomy and phylogeny to reconstruct problematic fossil taxa

description: R code used to undertake analyses
DOI: 10.6084/m9.figshare.23078559.v1
title: R File from Multivariate mapping of ontogeny, taphonomy and phylogeny to reconstruct problematic fossil taxa

description: R code used to undertake analyses
DOI: 10.6084/m9.figshare.22924164
title: Supplementary Material from Temporal avoidance as a means of reducing competition between sympatric species

description: Tables S1-S5 and Figures S1-S5
DOI: 10.6084/m9.figshare.22924164.v1
title: Supplementary Material from Temporal avoidance as a means of reducing competition between sympatric species

description: Tables S1-S5 and Figures S1-S5
DOI: 10.6084/m9.figshare.23077913
title: Table S2-DEGs_NSUN2-KO2.csv

description: DEGs after <em>NSUN2</em> knockout in the BC cell line MCF-7
DOI: 10.6084/m9.figshare.23077913.v1
title: Table S2-DEGs_NSUN2-KO2.csv

description: DEGs after <em>NSUN2</em> knockout in the BC cell line MCF-7
DOI: 10.6084/m9.figshare.23078450
title: Table S1_MDA_MB_231_MYC-MS

description: MYC protein mass spectrometry (MS) were performed in the BC cell MDA-MB-231.
DOI: 10.6084/m9.figshare.23078450.v1
title: Table S1_MDA_MB_231_MYC-MS

description: MYC protein mass spectrometry (MS) were performed in the BC cell MDA-MB-231.
DOI: 10.25345/c5zg6gh8p
title: MassIVE MSV000092007 - Globupain gel bands digested with trypsin
title: Globupain in gel trypsin digest 14 = 5A 15 = 6A 16 = 7A 17 = 8A 18 = 9A 19 = 10A 20 = 11A
DOI: 10.6084/m9.figshare.22767669
title: Data from Ontogeny of immunity and potential implications for co-infection

description: Immunity changes through ontogeny and can mediate facilitative and inhibitory interactions among co-infecting parasite species. In amphibians, most immune memory is not carried through metamorphosis, leading to variation in the complexity of immune responses across life stages. To test if the ontogeny of host immunity might drive interactions among co-infecting parasites, we simultaneously exposed Cuban treefrogs (<i>Osteopilus septentrionalis</i>) to a fungus (<i>Batrachochytrium dendrobaditis</i>, Bd) and a nematode (<i>Aplectana hamatospicula</i>) at tadpole, metamorphic and post-metamorphic life stages. We measured metrics of host immunity, host health and parasite abundance. We predicted facilitative interactions between co-infecting parasites as the different immune responses hosts mount to combat these infectious are energetically challenging to mount simultaneously. We found ontogenetic differences in IgY levels and cellular immunity but no evidence that metamorphic frogs were more immunosuppressed than tadpoles. There was also little evidence that these parasites facilitated one another and no evidence that <i>A. hamatospicula</i> infection altered host immunity or health. However, Bd, which is known to be immunosuppressive, decreased immunity in metamorphic frogs. This made metamorphic frogs both less resistant and less tolerant of Bd infection than the other life stages. These findings indicate that changes in immunity altered host responses to parasite exposures throughout ontogeny.This article is part of the theme issue ‘Amphibian immunity: stress, disease and ecoimmunology’.
DOI: 10.6084/m9.figshare.22767669.v1
title: Data from Ontogeny of immunity and potential implications for co-infection

description: Immunity changes through ontogeny and can mediate facilitative and inhibitory interactions among co-infecting parasite species. In amphibians, most immune memory is not carried through metamorphosis, leading to variation in the complexity of immune responses across life stages. To test if the ontogeny of host immunity might drive interactions among co-infecting parasites, we simultaneously exposed Cuban treefrogs (<i>Osteopilus septentrionalis</i>) to a fungus (<i>Batrachochytrium dendrobaditis</i>, Bd) and a nematode (<i>Aplectana hamatospicula</i>) at tadpole, metamorphic and post-metamorphic life stages. We measured metrics of host immunity, host health and parasite abundance. We predicted facilitative interactions between co-infecting parasites as the different immune responses hosts mount to combat these infectious are energetically challenging to mount simultaneously. We found ontogenetic differences in IgY levels and cellular immunity but no evidence that metamorphic frogs were more immunosuppressed than tadpoles. There was also little evidence that these parasites facilitated one another and no evidence that <i>A. hamatospicula</i> infection altered host immunity or health. However, Bd, which is known to be immunosuppressive, decreased immunity in metamorphic frogs. This made metamorphic frogs both less resistant and less tolerant of Bd infection than the other life stages. These findings indicate that changes in immunity altered host responses to parasite exposures throughout ontogeny.This article is part of the theme issue ‘Amphibian immunity: stress, disease and ecoimmunology’.
DOI: 10.5281/zenodo.7905585
title: amorphous carbon ab-initio calculation dataset

description: <strong>Description</strong> This dataset was used in our manuscript titled “Persistent homology-based descriptor for machine-learning potential of amorphous structures” (arXiv:2206.13727 [cs.LG] https://arxiv.org/abs/2206.13727). <strong>Methods to generate the dataset</strong> The amorphous carbon dataset was generated using ab initio calculations with VASP software. We utilized the LDA exchange-correlation functional and the PAW potential for carbon. Melt-quench simulations were performed to create amorphous and liquid-state structures. A simple cubic lattice of 216 carbon atoms was chosen as the initial state. Simulations were conducted at densities of 1.5, 1.7, 2.0, 2.2, 2.4, 2.6, 2.8, 3.0, 3.2, 3.4, and 3.5 g/cm<sup>3</sup> to produce a variety of structures. The NVT ensemble was employed for all melt-quench simulations, and the density was adjusted by modifying the size of the simulation cell. A time step of 1 fs was used for the simulations. For all densities, only the Γ points were sampled in the k-space. To increase structural diversity, six independent simulations were performed. In the melt-quench simulations, the temperature was raised from 300 K to 9000 K over 2 ps to melt carbon. Equilibrium molecular dynamics (MD) was conducted at 9000 K for 3 ps to create a liquid state, followed by a decrease in temperature to 5000 K over 2 ps, with the system equilibrating at that temperature for 2 ps. Finally, the temperature was lowered from 5000 K to 300 K over 2 ps to generate an amorphous structure. During the melt-quench simulation, 30 snapshots were taken from the equilibrium MD trajectory at 9000 K, 100 from the cooling process between 9000 and 5000 K, 25 from the equilibrium MD trajectory at 5000 K, and 100 from the cooling process between 5000 and 300 K. This yielded a total of 16,830 data points. Data for diamond structures containing 216 atoms at densities of 2.4, 2.6, 2.8, 3.0, 3.2, 3.4, and 3.5 g/cm3 were also prepared. Further data on the diamond structure were obtained from 80 snapshots taken from the 2 ps equilibrium MD trajectory at 300 K, resulting in 560 data points. To validate predictions for larger structures, we generated data for 512-atom systems using the same procedure as for the 216-atom systems. A single simulation was conducted for each density. The number of data points was 2,805 for amorphous and liquid states. <strong>Contents of each folder </strong> ・216atom_amorphous: Contains six xyz files generated from the trajectory of the melt-quench simulation. ・216atom_crystal: Contains a single xyz file with data of diamond structures containing 216 atoms at densities of 2.4, 2.6, 2.8, 3.0, 3.2, 3.4, and 3.5 g/cm3. ・512atom_amorphous: Contains a single xyz file with data of 512-atom systems. ・dataset_train_test_split: The training and test data used in the manuscript, constructed from splitting the entire 216atom_amorphous dataset.
DOI: 10.5281/zenodo.7905584
title: amorphous carbon ab-initio calculation dataset

description: <strong>Description</strong> This dataset was used in our manuscript titled “Persistent homology-based descriptor for machine-learning potential of amorphous structures” (arXiv:2206.13727 [cs.LG] https://arxiv.org/abs/2206.13727). <strong>Methods to generate the dataset</strong> The amorphous carbon dataset was generated using ab initio calculations with VASP software. We utilized the LDA exchange-correlation functional and the PAW potential for carbon. Melt-quench simulations were performed to create amorphous and liquid-state structures. A simple cubic lattice of 216 carbon atoms was chosen as the initial state. Simulations were conducted at densities of 1.5, 1.7, 2.0, 2.2, 2.4, 2.6, 2.8, 3.0, 3.2, 3.4, and 3.5 g/cm<sup>3</sup> to produce a variety of structures. The NVT ensemble was employed for all melt-quench simulations, and the density was adjusted by modifying the size of the simulation cell. A time step of 1 fs was used for the simulations. For all densities, only the Γ points were sampled in the k-space. To increase structural diversity, six independent simulations were performed. In the melt-quench simulations, the temperature was raised from 300 K to 9000 K over 2 ps to melt carbon. Equilibrium molecular dynamics (MD) was conducted at 9000 K for 3 ps to create a liquid state, followed by a decrease in temperature to 5000 K over 2 ps, with the system equilibrating at that temperature for 2 ps. Finally, the temperature was lowered from 5000 K to 300 K over 2 ps to generate an amorphous structure. During the melt-quench simulation, 30 snapshots were taken from the equilibrium MD trajectory at 9000 K, 100 from the cooling process between 9000 and 5000 K, 25 from the equilibrium MD trajectory at 5000 K, and 100 from the cooling process between 5000 and 300 K. This yielded a total of 16,830 data points. Data for diamond structures containing 216 atoms at densities of 2.4, 2.6, 2.8, 3.0, 3.2, 3.4, and 3.5 g/cm3 were also prepared. Further data on the diamond structure were obtained from 80 snapshots taken from the 2 ps equilibrium MD trajectory at 300 K, resulting in 560 data points. To validate predictions for larger structures, we generated data for 512-atom systems using the same procedure as for the 216-atom systems. A single simulation was conducted for each density. The number of data points was 2,805 for amorphous and liquid states. <strong>Contents of each folder </strong> ・216atom_amorphous: Contains six xyz files generated from the trajectory of the melt-quench simulation. ・216atom_crystal: Contains a single xyz file with data of diamond structures containing 216 atoms at densities of 2.4, 2.6, 2.8, 3.0, 3.2, 3.4, and 3.5 g/cm3. ・512atom_amorphous: Contains a single xyz file with data of 512-atom systems. ・dataset_train_test_split: The training and test data used in the manuscript, constructed from splitting the entire 216atom_amorphous dataset.
DOI: 10.57841/casdc.0000800
title: XDC04010300-3m级盾构机滚子解剖6
DOI: 10.57841/casdc.0000801
title: XDC04010300-马氏体组织形貌1
DOI: 10.57841/casdc.0000802
title: XDC04010300-3m级盾构机滚子解剖
DOI: 10.57841/casdc.0000803
title: XDC04010300-3m级盾构机滚子解剖4
DOI: 10.57841/casdc.0000804
title: XDC04010300-3m级盾构机滚子解剖3
DOI: 10.57841/casdc.0000805
title: XDC04010300-3m级盾构机滚子解剖2
DOI: 10.57841/casdc.0000806
title: XDC04010300-3m级盾构机滚子解剖1
DOI: 10.57841/casdc.0000807
title: XDC04010300-屈氏体组织形貌4
DOI: 10.57841/casdc.0000808
title: XDC04010300-屈氏体组织形貌3
DOI: 10.57841/casdc.0000809
title: XDC04010300-屈氏体组织形貌2
DOI: 10.57841/casdc.0000810
title: XDC04010300-屈氏体组织形貌1
DOI: 10.57841/casdc.0000811
title: XDC04010300-晶界腐蚀4
DOI: 10.57841/casdc.0000812
title: XDC04010300-晶界腐蚀3
DOI: 10.57841/casdc.0000813
title: XDC04010300-晶界腐蚀2
DOI: 10.57841/casdc.0000814
title: XDC04010300-晶界腐蚀1
DOI: 10.57841/casdc.0000815
title: XDC04010300-球化态组织形貌4
DOI: 10.57841/casdc.0000816
title: XDC04010300-球化态组织形貌3
DOI: 10.57841/casdc.0000817
title: XDC04010300-球化态组织形貌2
DOI: 10.57841/casdc.0000818
title: XDC04010300-球化态组织形貌1
DOI: 10.57841/casdc.0000819
title: XDC04010300-马氏体组织形貌5
DOI: 10.57841/casdc.0000820
title: XDC04010300-马氏体组织形貌4
DOI: 10.57841/casdc.0000821
title: XDC04010300-马氏体组织形貌3
DOI: 10.57841/casdc.0000822
title: XDC04010300-马氏体组织形貌2
DOI: 10.6084/m9.figshare.23080388
title: deepspeech_espeak

description: Experiment results of Espeak TTS -Deepspeech ASR Combination
DOI: 10.6084/m9.figshare.23080388.v1
title: deepspeech_espeak

description: Experiment results of Espeak TTS -Deepspeech ASR Combination
DOI: 10.57841/casdc.0000823
title: XDC04010300-屈氏体组织形貌
DOI: 10.34740/kaggle/dsv/5749382
title: 🇺🇦 Ukraine Conflict Twitter Dataset
DOI: 10.5281/zenodo.7960633
title: Oral Cannabis ARRIVE Essential 10 checklist

description: Oral Cannabis ARRIVE Essential 10 checklist
DOI: 10.5281/zenodo.7960632
title: Oral Cannabis ARRIVE Essential 10 checklist

description: Oral Cannabis ARRIVE Essential 10 checklist
DOI: 10.5281/zenodo.7960602
title: Can industrial transfer lead to carbon transfer in China's high energy consumption industry?

description: The above is the data for all images in the manuscript, mainly including: Carbon emissions and carbon transfer of energy-intensive industries in eight regions、Path of energy-intensive industrial transfer and carbon transfer in 2002, 2007, 2012 and 2017、MGWR regression results in 2002, 2007, 2012 and 2017
DOI: 10.5281/zenodo.7960601
title: Can industrial transfer lead to carbon transfer in China's high energy consumption industry?

description: The above is the data for all images in the manuscript, mainly including: Carbon emissions and carbon transfer of energy-intensive industries in eight regions、Path of energy-intensive industrial transfer and carbon transfer in 2002, 2007, 2012 and 2017、MGWR regression results in 2002, 2007, 2012 and 2017
DOI: 10.26030/9n0x-hd98
title: Fifteen days of microgravity causes growth in calvaria of mice (STS-131)

description: Bone growth may occur in spaceflight as a response to skeletal unloading and head-ward fluid shifts. While unloading causes significant loss of bone mass and density in legs of animals exposed to microgravity, increased blood and interstitial fluid flows accompanying microgravity-induced fluid redistribution may elicit an opposite effect in the head. Seven 23-week-old, adult female wild-type C57BL/6 mice were randomly chosen for exposure to 15 days of microgravity on the STS-131 mission, while eight female littermates served as ground controls. Upon mission completion, all 15 murine calvariae were imaged on a micro-computed tomography scanner. A standardized rectangular volume was placed on the parietal bones of each calvaria for analyses, and three parameters were determined to measure increased parietal bone volume: bone volume (BV), average cortical thickness (Ct.Th), and tissue mineral density (TMD). Microgravity exposure caused a statistically significant increase in BV of the spaceflight (SF) group compared to that of the ground control (GC) group, the mean BV ± SD for the SF group was 1.904 ± 0.842 mm3, compared to 1.758 ± 0.122 mm3 for the GC group (p less than 0.05). Ct.Th demonstrated a trend of increase from 0.099 ± 0.006 mm in the GC group to 0.104 ± 0.005 mm in the SF group (p equals 0.12). TMD was similar between the two groups with 0.878 ± 0.029 g/cm3 for the GC group and 0.893 ± 0.028 g/cm3 for the SF group (p equals 0.31). Our results indicate that microgravity causes responsive changes in calvarial bones that do not normally bear weight. These findings suggest that fluid shifts alone accompanying microgravity may initiate bone adaptation independent of skeletal loading by tissue. This dataset was derived from the literature, and contains only grouped mCT data from the calvaria.
DOI: 10.6084/m9.figshare.23083953
title: Additional file 1 of Transcriptome profile changes in the jejunum of nonhuman primates exposed to supralethal dose of total- or partial-body radiation

description: Additional file 1: Supplementary Tables.
DOI: 10.6084/m9.figshare.23083953.v1
title: Additional file 1 of Transcriptome profile changes in the jejunum of nonhuman primates exposed to supralethal dose of total- or partial-body radiation

description: Additional file 1: Supplementary Tables.
DOI: 10.6084/m9.figshare.23083978
title: Additional file 1 of A landscape assessment of the activities and capacities of evidence-to-policy intermediaries (EPI) in behavioral health

description: Additional file 1.
DOI: 10.6084/m9.figshare.23083978.v1
title: Additional file 1 of A landscape assessment of the activities and capacities of evidence-to-policy intermediaries (EPI) in behavioral health

description: Additional file 1.
DOI: 10.6084/m9.figshare.23083283
title: Seasonal dynamics of oxidative, antioxidative parameters and stress-related genes in tsinling lenok trout (Brachymystax lenok tsinlingensis).zip

description: <strong>Seasonal dynamics of oxidative, antioxidative parameters and stress-related genes</strong> <strong>in tsinling lenok trout (</strong><em><strong>Brachymystax lenok tsinlingensis</strong></em><strong>)</strong>
DOI: 10.6084/m9.figshare.23083283.v1
title: Seasonal dynamics of oxidative, antioxidative parameters and stress-related genes in tsinling lenok trout (Brachymystax lenok tsinlingensis).zip

description: <strong>Seasonal dynamics of oxidative, antioxidative parameters and stress-related genes</strong> <strong>in tsinling lenok trout (</strong><em><strong>Brachymystax lenok tsinlingensis</strong></em><strong>)</strong>
DOI: 10.6084/m9.figshare.23083989
title: Additional file 1 of Building an inpatient addiction medicine consult service in Sudbury, Canada: preliminary data and lessons learned in the era of COVID-19

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23083989.v1
title: Additional file 1 of Building an inpatient addiction medicine consult service in Sudbury, Canada: preliminary data and lessons learned in the era of COVID-19

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23084016
title: Additional file 1 of Transcriptomic analysis of benznidazole-resistant and susceptible Trypanosoma cruzi populations

description: Additional file 1: Table S1. Characteristics of the reads that remained after the removal of low-quality data after Trimmomatic analysis.
DOI: 10.6084/m9.figshare.23084016.v1
title: Additional file 1 of Transcriptomic analysis of benznidazole-resistant and susceptible Trypanosoma cruzi populations

description: Additional file 1: Table S1. Characteristics of the reads that remained after the removal of low-quality data after Trimmomatic analysis.
DOI: 10.6084/m9.figshare.23084022
title: Additional file 3 of Transcriptomic analysis of benznidazole-resistant and susceptible Trypanosoma cruzi populations

description: Additional file 3: Table S2. Enriched transcripts for biological process category with Gene Ontology-assigned terms.
DOI: 10.6084/m9.figshare.23084022.v1
title: Additional file 3 of Transcriptomic analysis of benznidazole-resistant and susceptible Trypanosoma cruzi populations

description: Additional file 3: Table S2. Enriched transcripts for biological process category with Gene Ontology-assigned terms.
DOI: 10.6084/m9.figshare.23084025
title: Additional file 4 of Transcriptomic analysis of benznidazole-resistant and susceptible Trypanosoma cruzi populations

description: Additional file 4: Table S3. Transcripts that were not enriched for biological process category with Gene Ontology-assigned terms.
DOI: 10.6084/m9.figshare.23084025.v1
title: Additional file 4 of Transcriptomic analysis of benznidazole-resistant and susceptible Trypanosoma cruzi populations

description: Additional file 4: Table S3. Transcripts that were not enriched for biological process category with Gene Ontology-assigned terms.
DOI: 10.6084/m9.figshare.23084028
title: Additional file 5 of Transcriptomic analysis of benznidazole-resistant and susceptible Trypanosoma cruzi populations

description: Additional file 5: Table S4. Transcripts that were not enriched for biological process category without Gene Ontology-assigned terms.
DOI: 10.6084/m9.figshare.23084028.v1
title: Additional file 5 of Transcriptomic analysis of benznidazole-resistant and susceptible Trypanosoma cruzi populations

description: Additional file 5: Table S4. Transcripts that were not enriched for biological process category without Gene Ontology-assigned terms.
DOI: 10.6084/m9.figshare.23084031
title: Additional file 6 of Transcriptomic analysis of benznidazole-resistant and susceptible Trypanosoma cruzi populations

description: Additional file 6: Table S5. Transcripts with unknown function without Gene Ontology-assigned terms.
DOI: 10.6084/m9.figshare.23084031.v1
title: Additional file 6 of Transcriptomic analysis of benznidazole-resistant and susceptible Trypanosoma cruzi populations

description: Additional file 6: Table S5. Transcripts with unknown function without Gene Ontology-assigned terms.
DOI: 10.6084/m9.figshare.23084076
title: Additional file 2 of Circular RNA Tmcc1 improves astrocytic glutamate metabolism and spatial memory via NF-κB and CREB signaling in a bile duct ligation mouse model: transcriptional and cellular analyses

description: Additional file 2: Table S1. Primer list.
DOI: 10.6084/m9.figshare.23084082.v1
title: Additional file 3 of Circular RNA Tmcc1 improves astrocytic glutamate metabolism and spatial memory via NF-κB and CREB signaling in a bile duct ligation mouse model: transcriptional and cellular analyses

description: Additional file 3: Table S2. Expression level of circRNAs differentially expressed in BDL mouse cortex.
DOI: 10.5519/qd.of4e7kf9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5547795 records)
DOI: 10.6084/m9.figshare.23084076.v1
title: Additional file 2 of Circular RNA Tmcc1 improves astrocytic glutamate metabolism and spatial memory via NF-κB and CREB signaling in a bile duct ligation mouse model: transcriptional and cellular analyses

description: Additional file 2: Table S1. Primer list.
DOI: 10.6084/m9.figshare.23084082
title: Additional file 3 of Circular RNA Tmcc1 improves astrocytic glutamate metabolism and spatial memory via NF-κB and CREB signaling in a bile duct ligation mouse model: transcriptional and cellular analyses

description: Additional file 3: Table S2. Expression level of circRNAs differentially expressed in BDL mouse cortex.
DOI: 10.6084/m9.figshare.23084085
title: Additional file 4 of Circular RNA Tmcc1 improves astrocytic glutamate metabolism and spatial memory via NF-κB and CREB signaling in a bile duct ligation mouse model: transcriptional and cellular analyses

description: Additional file 4: Table S3. BART, ChEA3 top 10 gene.
DOI: 10.6084/m9.figshare.23084085.v1
title: Additional file 4 of Circular RNA Tmcc1 improves astrocytic glutamate metabolism and spatial memory via NF-κB and CREB signaling in a bile duct ligation mouse model: transcriptional and cellular analyses

description: Additional file 4: Table S3. BART, ChEA3 top 10 gene.