cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/gzfbcy2z2s.1
title: Acoustic Characterization of Sensors for Marine Environmental Monitoring

description: These files accompany the paper "Acoustic Characterization of Sensors for Marine Environmental Monitoring," by Emma Cotter, Paul Murphy, Christopher Bassett, Benjamin Williamson, and Brian Polagye, submitted to the Marine Pollution Bulletin. Data are contained in the spreadsheet file, "PSD (Swath Sweeps).xlsx". This file contains the power spectral density, in dB re 1 uPa^2/Hz, at varying positions within the swath of four acoustic sensors (each sensor is contained in a separate sheet). For multibeam sonars, the "along-swath" and "across-swath" directions are specified. The first row of each sheet specifies the angle, relative to the center of the swath or beam (0 degrees), at which each measurment was taken, and the first column specifies the frequency, in kHz, of each value. The reported PSDs are the received level by a hydrophone that was positioned 6 meters from the transudcers (fore hydrophone in the corresponding manuscript).
DOI: 10.17632/tjp8h523p7.1
title: Indoor climate projections for European cattle barns

description: In the last decades, an exceptional global warming trend was observed. Modifications in the humidity and wind regime may amplify the regional and local impacts on livestock husbandry. Modifications in housing management are the main measures taken to improve the ability of livestock to cope with these conditions. Measures are, however, typically taken in reaction to uncomfortable conditions instead of in anticipation of a risk for climatic stress. Moreover, measures that balance welfare, environmental and economic issues are barely investigated in the context of climate change and are thus almost not available for commercial farms. In Europe, cows are economically highly relevant and are mainly kept in naturally ventilated buildings that are most susceptible to climate change. The high-yielding cows are particularly vulnerable to heat stress. We used nested models to estimate the future heat stress risk in such dairy cattle husbandry systems. The indoor climate was monitored inside three reference barns in Central Europe and in the Mediterranean region. An artificial neuronal network (ANN) was trained to relate the outdoor weather conditions provided by official meteorological weather stations to the measured indoor microclimate. Subsequently, this ANN model for the indoor microclimate was driven by an ensemble of regional climate model projections with three different greenhouse gas concentration scenarios. The data comprises: (1) Aggregated indoor measurements. Spatial averages for each barn are provided for zonal wind component (uw), meridional wind component (vw), air temperature (ta) and relative humidity (rh) as hourly averaged values. (2) Pictures of the naturally ventilated barns together with sketches of the measurement positions used for the averaging. (3) A map indicating the regional distribution of the data collection within the simulation domain. (4) Observations of the German Weather Service (DWD) and the National Climatic Data Center (NCDC) Archive of the National Oceanic and Atmospheric Administration (NOAA) aggregated to hourly values. Data for near-surface air temperature (tas), precipitation (pr), near-surface relative humidity (hurs), cloud coverage (cld), short wave downwelling radiation (rsds), sunshine duration (sdur), surface air pressure (ps), sea-level air pressure (psl), wind speed (wspd), wind direction (wdir), zonal wind component (uw), and meridional wind component (vw) are provided. Missing measurements were filled using a hot deck imputation method. (5) Simulated indoor climate conditions using trained artificial neuronal networks driven by historical respectively future (RCP 2.6, 4.5 and 8.5) climate model projections based on the CORDEX-EUR global-regional climate model ensemble. Time series of indoor averages for air temperature (ta), relative humidity (rh), zonal wind component (uw), meridional wind component (vw) and temperature humidity index (thi) are provided on an hourly base.
DOI: 10.3886/icpsr37314.v1
title: Metastereotypes of Women in STEM
title: Version 1

description: These data were collected from female faculty in STEM disciplines. Analyses will be reported in the Archives of Scientific Psychology.
description: Datasets:
					
						DS1: Dataset
DOI: 10.5061/dryad.01kh74c/12
title: S12_Supplemental_material: Dental and bone measurements of Lunanosorex lii, Lunanosorex qiui, and Dolinasorex glyphodon.

description: Dental and bone measurements (mm) of Lunanosorex lii Jin et Kawamura, 1996b from [1] Chinese Qipanshan Hill site (original description); L. lii from [2] Chinese Houxushan Hill (Jin et al., 2007); Lunanosorex qiui Jin, Sun et Zhang, 2007 from [3] Chinese Bilike locality (see Qiu and Storch, 2000; as Lunanosorex cf lii); Dolinasorex glyphodon Rofes et Cuenca-Bescos, 2009 from [4] Spanish Grand Dolina site (original description). Measurements are presented as in table S8. For D. glyphodon presents only means for each level, TD4–TD5–TD6, in square brackets (SD, limits and n see in Rofes and Cuenca-Bescos, 2009: tabs 1A, 1B).
DOI: 10.5061/dryad.01kh74c/13
title: S13_Supplemental_material: Dental and bone measurements of investigated material of Beremendia fissidens, B. cf. fissidens, and B. minor from 16 early Pliocene–Early Pleistocene localities of Russia (Siberia), Kazakhstan and Mongolia.

description: Dental and bone measurements (mm) of investigated material of Beremendia fissidens, B. cf. B. fissidens, and B. minor from 16 early Pliocene–Early Pleistocene localities of Russia (Siberia), Kazakhstan and Mongolia. Proper specimen measurements sorted by localities see in table S14 below. Measurements are presented as in table S8.
DOI: 10.5061/dryad.01kh74c/14
title: S14_Supplemental_material: Fifty-seven individual measurements (mm) of investigated specimens of Beremendia fissidens, B. cf. fissidens, and B. minor from 16 early Pliocene–Early Pleistocene localities of Russia (Siberia), Kazakhstan, and Mongolia.

description: Fifty-seven individual measurements (mm) of investigated specimens of Beremendia fissidens, B. cf. B. fissidens, and B. minor from 16 early Pliocene–Early Pleistocene localities of Russia (Siberia), Kazakhstan and Mongolia. Abbreviations see in the main text.
DOI: 10.5061/dryad.01kh74c/15
title: S15_Supplemental_material: Characters of Beremendia skull rostral part and upper teeth.

description: The characters of Beremendia skull rostral part and upper teeth. Figs. 1 and 2.
DOI: 10.5061/dryad.01kh74c/16
title: S16_Supplemental_material: Characters of the condylar articular surfaces and entoglenoid fossa of Blarina and Beremendia.

description: Characters of the condylar articular surfaces and entoglenoid fossa of Blarina and Beremendia. Figs. 1 and 2.
DOI: 10.5061/dryad.01kh74c/17
title: S17_Supplemental_material: List of abbreviations.
DOI: 10.15129/dcbc7727-db13-43c1-8a1c-1fd3eb4ddf7b
title: Data for: "Cathodic Quantum Dot Facilitated Electrochemiluminescent Detection in Blood"

description: Supporting material includes ECL responses for the interactions with reactive oxygen species (Figure S1), ECL responses for 1 mM K2S2O8 in blood with the Stern-Volmer and modified Stern-Volmer plots for this data (Figure S2). The ECL dependence for the interferents given in Figure 6 (Figure S3). Chromatographic experimental details are also included (Figure S4). This material is available free of charge via the Internet at http://pubs.acs.org.
DOI: 10.17632/924hb6dsps.2
title: Dataset for Modelling of Sharing Networks in the Circular Economy

description: This research study attempts to mathematically model the integration of a sharing network and a circular production system in the supply chain of a leading Indian manufacturer of laptops. The projected outcomes of this study are to effectively quantify the economic benefits and the environmental impacts associated with this integration. Seeing as there is an inherent trade-off between the two objectives, we utilize an optimization package that deploys a Multi-Objective Mixed-Integer Linear-Programming (MOMILP) model to select an appropriate configuration. The mathematical model, data-set, and the code utilised are attached below.
DOI: 10.17632/9wf2hhd4yf.2
title: Statistical data of a clinical study of the severity of bronchial asthma in children of the Kharkov region, 2017
DOI: 10.17632/x6r9c6zvw6.2
title: Solar and wind generation for a collection of regions in the US

description: The data is downloaded from National Solar Radiation Data Base (NSRDB) and Wind Integration National Dataset (WIND) provided by National Renewable Energy Laboratory (NREL). Each file corresponds to normalized wind or solar generation in 2008, 2009, 2010 for 100 locations on a regular 10X10 grid over a specific rectangular region specified in the corresponding paper. File names are of the form: "_p__x_y_z", where x = wind or solar y = geographical region id. BigSquare for the base case (region 1), 2Quad for four quarters (regions 2, 3, 4, 5), 10Quad for four small rectangles (regions 6, 7, 8, 9). East indicates that the data is from the eastern case study. z = case id. Std for the default parameters (as in base case), H for hourly generation, H10 for 5-hourly generation.
DOI: 10.17632/y6mtnsyvpz.3
title: XRF analysis: 23 Wallachian ducats (1452-1456)

description: The dataset contains analysis of metal of twenty-three Muntenia ducats hammered in 1452-1456. Ducats are divided into four types: I, IIA, IIB, IIC. The specimens are in the author’s private collection of coins and medals.
DOI: 10.17632/yzy85dtwk3.1
title: A stigmatic gene confers inter-species incompatibility in the Brassicaceae

description: Raw data for pollen tube count accompanying the below manuscript. Title: A stigmatic gene confers inter-species incompatibility in the Brassicaceae Authors: Sota Fujii1,2,3*, Takashi Tsuchimatsu4, Yuka Kimura1, Shota Ishida1, Surachat Tangpranomkorn1, Hiroko Shimosato-Asano2, Megumi Iwano2†, Shoko Furukawa2, Wakana Itoyama2, Yuko Wada2, Kentaro K. Shimizu5,6, Seiji Takayama1,2* Affiliations: 1. Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan. 2. Graduate School of Biological Sciences, Nara Institute of Science and Technology, Nara 630-0192, Japan. 3. Japan Science and Technology Agency, Precursory Research for Embryonic Science and Technology, Saitama 332-0012, Japan. 4. Department of Biology, Graduate School of Science, Chiba University, Chiba 263-8522, Japan. 5. Department of Evolutionary Biology and Environmental Studies, University of Zurich, CH-8057 Zurich, Switzerland. 6. Kihara Institute for Biological Research, Yokohama City University, Yokohama 244-0813, Japan. Author List Footnotes: †Present address: Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan. *Correspondence: a-fujii@mail.ecc.u-tokyo.ac.jp; a-taka@mail.ecc.u-tokyo.ac.jp.
DOI: 10.5525/gla.researchdata.670
title: A 64x64 SPAD array for portable colorimetric sensing, fluorescence and x-ray imaging

description: Design and characterization of the designed test Single photon avalanche diode (SPAD) and the 64x64 pixel array based on the test SPAD. The test SPAD performances are compared to the state-of-the-art to prove the effectiveness of the design at low illumination condition. The 64x64 SPAD array performances are characterized and the results of three different applications (colorimetric sensing, fluorescence and x ray imaging) are reported.
DOI: 10.17632/84kn7s4c3n.1
title: Dataset for paper: An Internet of Things Platform for Air Station Remote Sensing and Smart Monitoring

description: Air quality event patterns implemented in Esper EPL to be deployed in the FIWARE platform, and the air quality levels in Andalusia (Spain) calculated by these patterns.
DOI: 10.17632/z668n42cpw.1
title: Data for: Effects of soy on glucose metabolism in patients with type 2 diabetes: Systematic review and meta-analysis

description: Effects of soy on glucose metabolism in patients with type 2 diabetes: Systematic review and meta-analysis
DOI: 10.17632/6ncsrwjgb8.1
title: Data for: Amino acid composition and essential amino acid requirements of pebbly fish, Alestes baremoze (Joannis, 1835)

description: Background Alestes baremoze (Joannis, 1835) is a valuable food fish with a wide geographical distribution in East, North and West Africa. Currently, the nutritional requirements of A. baremoze have not yet been determined, which hinders attempts towards developing appropriate feed formulations for its culture. The data shows amino acid composition and essential amino acid (EAA) requirements of A. baremoze using the A/E ratio method, as a guide in formulating its diet. The objective is this study was to estimate the dietary requirements of A. baremoze of different size classes. Sample collection Fish was categorised into four classes according to its fork lengths (1–12 cm; 13–24 cm; 25–36 cm and 37–48 cm), with each class consisting of 10 fish. Whole fish, excluding the viscera, liver and gonads, were individually chopped, minced on ice and frozen for further processing. Protein content and amino acid analysis Crude protein was determined using the Kjeldahl method, after acid digestion using copper (II) sulphate as a catalyst, according to AOAC 24.38-24.040 (ISO 937). Total amino acid profiles were determined according to the adapted method of the European Commission (Commission Directive 98/64/EC of 3 September 1998). A/E ratio and estimation of EAA dietary requirements The A/E ratios of the EAA composition of the whole fish body were calculated according to Arai (1981) and Hossain et al. (2011). Since there is no available data on the lysine requirement for A. baremoze, the EAA dietary requirement of A. baremoze was estimated based on the known 5.0% lysine requirement per 100 g protein using the following formulae: A/E ratio= [(individual EAA / total EAA including cystine and tyrosine) × 1000]. EAA = [(Determined requirement value of lysine × A/E ratio of individual amino acid) / A/E ratio of lysine] using 5.0% lysine concentration
DOI: 10.17632/9mpgz8z257.1
title: DMOZ 2006 Dataset and its Wikification

description: This dataset was retrieved with a crawler in 2006 from the Open Directory Project (ODP) (http://dmoz.org, https://en.wikipedia.org/wiki/DMOZ), which closed in 2017 and was reborn as Curlie (https://curlie.org/). The topics were selected from the third level of the ODP hierarchy. Some constraints were imposed on this selection to ensure the quality of the dataset. The minimum size for each selected topic was 100 URLs, and the language was restricted to English. For each topic, we collected all of its URLs as well as those in its subtopics. The retrieved HTML was parsed and cleaned to remove empty, pdf, flash, and other not useful files. The total number of collected pages was more than 350K from 448 topics. In 2018 the data was wikified.
DOI: 10.17632/p8rfnkmdtp.1
title: Data for: Data from differentially expressed proteins in platelet components associated with adverse transfusion reactions.

description: These data correspond to the processing data obtained from protein differentially expression analysis of blood platelet components (PCs), when those PCs were found in association with adverse transfusion reactions (ATRs), in the following types: i) Buffy-coat-derived pooled PCs (PPCs) ii) Single donor apheresis PCs (SDA-PCs)
DOI: 10.25345/c5c91d
title: MassIVE MSV000083754 - Structure of an essential inner membrane protein-LPS complex identifies a novel anti-microbial peptide
title: Lipopolysaccharide (LPS) resides in the outer membrane (OM) of Gram-negative bacteria where it is responsible for barrier function and immune modulation.  LPS is the target of polymyxins, last-resort antibiotics whose clinical use is threatened by increasing resistance.  Steps in LPS biogenesis are known, but how LPS biosynthesis and transport to the OM is coordinated remains poorly understood.  Here, we find that depletion of the Escherichia coli inner membrane protein PbgA attenuates pathogenesis and produces defects in the OM.  Structural analysis of PbgA identifies an enzyme superfamily known to modify the envelopes of Gram-positive and Gram-negative bacteria; however, PbgA reveals a defunct hydrolase-active site, a distinctive architecture, and an unprecedented lipid A-binding motif along the periplasmic leaflet of the inner membrane.  Unlike canonical lipid-binding proteins, PbgA achieves LPS coordination primarily through backbone-mediated interactions.  Offensive mutations within the lipid A-binding motif disrupt the OM barrier, suggesting that LPS perception by PbgA plays a key role in maintaining OM homeostasis.  PbgA-derived synthetic peptides selectively bind to LPS in vitro and inhibit the growth of diverse Gram-negative bacterial species, including polymyxin-resistant strains.  Our studies uncover an essential pseudo-hydrolase with an unexpected link to OM biogenesis, highlight a new structural paradigm in selective lipid recognition, and provide important templates for future antibiotic discovery.
DOI: 10.25345/c57k9z
title: MassIVE MSV000083755 - GNPS-C10-M331-_mycelia_LH20_1_LTQ-XL
title: The strain streptomyces C10 was cultured in M331 medium. The mycelia was extracted with ME2CO, then dissolved in MeOH and  chromatographyed by column LH20. This sample is the first fraction from the column LH20.
DOI: 10.5281/zenodo.2678109
title: Titration_DB: NMR-monitored protein pH titration chemical shift data.

description: This archive contains a backup of the NMR titration_db database raw chemical shift data.<br>
Reference: D. Farrell et al., “Titration_DB: Storage and analysis of NMR-monitored protein pH titration curves.,” Proteins, vol. 78, no. 4, pp. 843–857, 2009.

This data was formerly hosted on an interactive website which is no longer active. The files are stored as csv format, one per protein. They are also split into three folders according to the nuclei whose chemical shifts were used to detect the measurement (1H,13C or 15 N). Much of this data was obtained from literature. A table in the zip file (titration_dataset_info.csv) associates the protein name with the original paper. 

Note that the database stored the pka values fit using a model to each residue dataset. This is not stored here.

Also present is a file titdb.fs. This is a binary file that can only be opened using the PEATDB software. PEATDB (Protein Engineering Analysis Tool - Database) was an application for sharing, analysing and storing experimental and theoretical data from Protein Engineering experiments.<br>
This is now legacy software and no longer maintained. It was used to allow interactive fitting of the titration data using the Ekin module.<br>
It is still possible to install this software if you really need to. It is stored on github at https://github.com/dmnfarrell/peat.

D. Farrell May 2019
description: {"references": ["D. Farrell et al., \"Titration_DB: Storage and analysis of NMR-monitored protein pH titration curves.,\" Proteins, vol. 78, no. 4, pp. 843\u2013857, 2009."]}
DOI: 10.5281/zenodo.2678110
title: Titration_DB: NMR-monitored protein pH titration chemical shift data.

description: This archive contains a backup of the NMR titration_db database raw chemical shift data.<br>
Reference: D. Farrell et al., “Titration_DB: Storage and analysis of NMR-monitored protein pH titration curves.,” Proteins, vol. 78, no. 4, pp. 843–857, 2009.

This data was formerly hosted on an interactive website which is no longer active. The files are stored as csv format, one per protein. They are also split into three folders according to the nuclei whose chemical shifts were used to detect the measurement (1H,13C or 15 N). Much of this data was obtained from literature. A table in the zip file (titration_dataset_info.csv) associates the protein name with the original paper. 

Note that the database stored the pka values fit using a model to each residue dataset. This is not stored here.

Also present is a file titdb.fs. This is a binary file that can only be opened using the PEATDB software. PEATDB (Protein Engineering Analysis Tool - Database) was an application for sharing, analysing and storing experimental and theoretical data from Protein Engineering experiments.<br>
This is now legacy software and no longer maintained. It was used to allow interactive fitting of the titration data using the Ekin module.<br>
It is still possible to install this software if you really need to. It is stored on github at https://github.com/dmnfarrell/peat.

D. Farrell May 2019
description: {"references": ["D. Farrell et al., \"Titration_DB: Storage and analysis of NMR-monitored protein pH titration curves.,\" Proteins, vol. 78, no. 4, pp. 843\u2013857, 2009."]}
DOI: 10.6073/pasta/fe900301ab98b8aaece0686b94636857
title: MCR LTER: Coral Reefs: Stegastes behavior data in support of Kamath, et al., Oikos 2019

description: Stable between-group differences in collective behavior have been documented in a variety of social taxa. 
        Here we evaluate the effects of such variation, often termed collective or colony-level personality, on 
        coral recovery in a tropical marine farmerfish system. Groups of the farmerfish Stegastes nigricans 
        cultivate and defend gardens of palatable algae on coral reefs in the Indo-Pacific. These gardens can 
        promote the recruitment, growth, and survival of corals by providing a refuge from coral predation. 
        Here we experimentally evaluate whether the collective defensive behavior of farmerfish colonies is 
        correlated across intruder feeding guilds—herbivores, corallivores and egg-eating predators. Further, 
        we evaluate if overall colony responsiveness or situation-specific responsiveness (i.e., towards herbivores, 
        corallivores, or egg-eaters in particular) best predicts the growth of outplanted corals. Finally, we 
        experimentally manipulated communities within S. nigricans gardens, adding either macroalgae or large 
        colonies of coral, to assess if farmerfish behavior changes in response to the communities they occupy. 
        Between-group differences in collective responsiveness were repeatable across intruder guilds. Despite 
        this consistency, responsiveness towards corallivores (porcupinefish and ornate butterflyfish) was a 
        better predictor of outplanted coral growth than responsiveness towards herbivores or egg-eaters. Adding 
        large corals to farmerfish gardens increased farmerfish attacks towards  intruders, pointing to possible 
        positive feedback loops between their aggression towards intruders and the presence of corals whose growth 
        they facilitate. These data provide evidence that among-group behavioral variation could strongly influence 
        the ecological properties of whole communities.
      These data support the publication  
        Kamath, A., J. N. Pruitt, A.J. Brooks, M.C Ladd, D.T. Cook, J.P. Gallagher, M.E. Vickers, S.J. Holbrook and R.J. Schmitt.  2019.  Potential feedback between coral presence and farmerfish collective behavior promotes coral recovery. Oikos 128:482-492.
        doi:10.1111/oik.05854
       This material is based upon work supported by the U.S. National Science Foundation under
        Grant No. OCE 16-37396 (and earlier awards) as well as a generous gift from the Gordon and
        Betty Moore Foundation. Research was completed under permits issued by the French Polynesian
        Government (Délégation à la Recherche) and the Haut-commissariat de la République en
        Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2018). This work represents a
        contribution of the Moorea Coral Reef (MCR) LTER Site.