cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3636026_d1
title: Additional file 5: of Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars

description: Annotation, transcript abundance values, and ANOVA results of all genes on the NimbleGen Whole-Genome microarray measured in five grape cultivars. Red highlighted rows identify the possibility of cross-hybridization of probes with other genes from Cramer et al. [41]. Cultivar and treatment abbreviations for experimental replicates: Cabernet Sauvignon (CS), Merlot (ME), Pinot Noir (PN), Chardonnay (CD), and Semillon (SM) grown under well-watered (W) and water deficit (D) conditions, nâ  =â  5. The probe.cross.hybridization column refers to the number of probes for that transcript that have the potential to cross-hybridize with other probes. Other column headings refer to a combination of cultivar name, treatment, and replicate number. (XLS 33741Â kb)
DOI: 10.6084/m9.figshare.c.3636026_d4
title: Additional file 6: of Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars

description: Annotation, read counts, transcript normalized log2 counts per million (CPM) values, and edgeR statistical results of all genes with unique counts assigned from Illumina RNAseq, with ‘.count’ and ‘.log2CPM’ suffixes respectively. Cultivar and treatment abbreviations for experimental replicates: Cabernet Sauvignon (CS), Merlot (ME), Pinot Noir (PN), Chardonnay (CD), and Semillon (SM) grown under well-watered (W) and water deficit (D) conditions, n = 3. Other column headings refer to a combination of cultivar name, treatment, and replicate number. (XLS 25195 kb)
DOI: 10.6084/m9.figshare.c.3636026_d6
title: Additional file 4: of Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars

description: ANOVA results for the quantifiable (1211) proteins (log2 NSAF) in five grape cultivars, with p-value (p) and adjusted p-value (adjp) prefixing each effect. Cultivar and treatment abbreviations for experimental replicates: Cabernet Sauvignon (CS), Merlot (ME), Pinot Noir (PN), Chardonnay (CD), and Semillon (SM) grown under well-watered (W) and water deficit (D) conditions, nâ  =â  3. Other column headings refer to a combination of cultivar name, treatment, and replicate number. (XLS 1032Â kb)
DOI: 10.6084/m9.figshare.c.3636026_d7
title: Additional file 8: of Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars

description: BinGO results for overrepresented GO biological process functional categories for all quantifiable proteins (1211). The proteins are identified by their UniProtKB accession name. (XLS 303Â kb)
DOI: 10.6084/m9.figshare.c.3636026_d8
title: Additional file 7: of Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars

description: Mean relative abundance values, M/Z, and results from the ANOVA for all primary and secondary metabolomic details for all metabolites (67) analyzed by GC-MS and (42) analyzed by LC-MS in five grape cultivars. Cultivar and treatment abbreviations for experimental replicates: Cabernet Sauvignon (CS), Merlot (ME), Pinot Noir (PN), Chardonnay (CD), and Semillon (SM) grown under well-watered (W) and water deficit (D) conditions, nâ  =â  6. (XLS 76Â kb)
DOI: 10.6084/m9.figshare.c.3636026_d10
title: Additional file 9: of Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars

description: Correlations of protein and transcript abundance. Protein data are log2 NSAF values, n = 3, RNAseq data are log2 normalized counts per million (CPM), n = 3, and microarray data are log2 RMA values, n = 5. Relationships of proteins with either RNAseq (CPM) or microarray (RMA) are indicated. (XLS 370 kb)
DOI: 10.6084/m9.figshare.c.3636026_d9
title: Additional file 3: of Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars

description: Annotation, protein spectral counts, Normalized Spectral Abundance Factor (NSAF) values and log2 transformed NSAF values for each replicate and protein identified, with ‘.count’, ‘.NSAF’, and ‘.NSAF.log2’ suffixes, respectively. Mass weight (Mr) and amino acid (AA) length are approximated values. Cultivar and treatment abbreviations for experimental replicates: Cabernet Sauvignon (CS), Merlot (ME), Pinot Noir (PN), Chardonnay (CD), and Semillon (SM) grown under well-watered (W) and water deficit (D) conditions, n = 3. Other column headings refer to a combination of cultivar name, treatment, and replicate number. For example, CDD2, is Chardonnay, water deficit and replicate 2. (XLS 4096 kb)
DOI: 10.6084/m9.figshare.c.3636266_d1
title: Additional file 6: of An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH

description: GlnA sequences used for the phylogenetic tree depicted in Fig.Â 5. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3636266_d3
title: Additional file 7: of An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH

description: MCE-related proteins encoded by the genomes of BMG5.1, Dg1 and Dg2. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3636266_d7
title: Additional file 2: of An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH

description: Secondary metabolite production encoded on genomes of Frankia Cluster II strains. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3636278_d1
title: Additional file 3: of Forging a link between mentoring and collaboration: a new training model for implementation science

description: Collaboration[year][activity].net: Pajek.net file for collaboration network for each year and activity. (ZIP 24 kb)
DOI: 10.6084/m9.figshare.c.3636278_d3
title: Additional file 2: of Forging a link between mentoring and collaboration: a new training model for implementation science

description: Contact[year].net: Pajek.net file for contact network for each year. (ZIP 11 kb)
DOI: 10.6084/m9.figshare.c.3636278_d2
title: Additional file 5: of Forging a link between mentoring and collaboration: a new training model for implementation science

description: Attributes[year].csv: comma-separated file of IRI member attributes for each year. (ZIP 1 kb)
DOI: 10.6084/m9.figshare.c.3636278_d5
title: Additional file 4: of Forging a link between mentoring and collaboration: a new training model for implementation science

description: Mentor[year].net: Pejak.net file for mentor networks for each year. (ZIP 5 kb)
DOI: 10.15121/2481106
title: Utah FORGE: Fiber Optic Cumulative Strain Change and Strain Change Rate Data From Well 16A Stimulation at Well 16B

description: This dataset includes Rayleigh Frequency Shift (RFS) Distributed Strain Sensing (DSS) cumulative strain change and change rate data. The data was acquired during the stimulation of Utah FORGE Well 16A(78)-32 in April 2024 via fiber installed in Well 16B(78)-32. The fiber optic data was acquired using Neubrex SR7000 RFS DSS Distributed Strain sensing instruments and is saved here in the format of HDF5 files (.h5 extension). The spatial sampling on the full wellbore profiles is 0.20 centimeters. The data is the far field strain change response from a baseline profile made down the 16B well on April 3, 2024, so each strain value represents the strain change or strain change rate at each depth relative to the baseline reference profile. The data arrays for each type share the same dimensions (number of channels and time stamps).
DOI: 10.6084/m9.figshare.c.3636716_d15
title: Additional file 11: Table S9. of Transcriptional analysis of phloem-associated cells of potato

description: Differentially expressed photoperiod genes. (XLSX 1172 kb)
DOI: 10.6084/m9.figshare.c.3636716_d14
title: Additional file 21: Table S15. of Transcriptional analysis of phloem-associated cells of potato

description: Primers for real time RT-PCR. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3636716_d21
title: Additional file 8: Table S7. of Transcriptional analysis of phloem-associated cells of potato

description: Abundant transcripts in PAC. (XLSX 324 kb)
DOI: 10.6084/m9.figshare.c.3637037_d2
title: Additional file 4: of Stimulating effect of normal-dosing of fibrates on cell proliferation: word of warning

description: P values obtained for changes in expression of Ki-67, cyclin E, cyclin A, Cdc25A and subcellular localization of PPARα receptor. Statistically different from control value are red (t-test, p
DOI: 10.6084/m9.figshare.c.3637037_d4
title: Additional file 3: of Stimulating effect of normal-dosing of fibrates on cell proliferation: word of warning

description: P values obtained for changes in cell viability after fibrates treatment in plasma concentration ranges. Statistically different from control value are red (t-test, pâ
DOI: 10.6084/m9.figshare.c.3637043_d1
title: MOESM1 of Material flows accounting for Scotland shows the merits of a circular economy and the folly of territorial carbon reporting

description: Additional file 1. C impact of materials model including the full model, sensitivity analysis and sources used in this study.
DOI: 10.6084/m9.figshare.c.3637058_d1
title: Additional file 1: of Development and validation of clinical profiles of patients hospitalized due to behavioral and psychological symptoms of dementia

description: Review of classification systems developed for psychiatry. Summarizes several characteristics of existing classification systems that were developed for psychiatry. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3637061_d5
title: Additional file 6: of Conserved 3â ˛ UTR stem-loop structure in L1 and Alu transposons in human genome: possible role in retrotransposition

description: Coordinates of stem-loops along the entire transposon length for the consensus sequence of each L1 subfamily. (CSV 472Â kb)
DOI: 10.6084/m9.figshare.c.3637061_d3
title: Additional file 8: of Conserved 3′ UTR stem-loop structure in L1 and Alu transposons in human genome: possible role in retrotransposition

description: Coordinates of the 3′-end stem-loop for consensus sequences for 213 Alu subfamilies. (CSV 28 kb)
DOI: 10.6084/m9.figshare.c.3637061_d7
title: Additional file 1: of Conserved 3â ˛ UTR stem-loop structure in L1 and Alu transposons in human genome: possible role in retrotransposition

description: Coordinates of 6622 L1s used in the study. (CSV 212Â kb)
DOI: 10.6084/m9.figshare.c.3637061_d8
title: Additional file 2: of Conserved 3â ˛ UTR stem-loop structure in L1 and Alu transposons in human genome: possible role in retrotransposition

description: Coordinates of 401242 Alus used in the study. (CSV 12945Â kb)
DOI: 10.6084/m9.figshare.c.3637283_d1
title: Additional file 4: of Accuracy of genomic selection for alfalfa biomass yield in different reference populations

description: List of SNPs, with flanking sequences, detected in PV data set. (ZIP 2612Â kb)
DOI: 10.6084/m9.figshare.c.3637283_d2
title: Additional file 6: of Accuracy of genomic selection for alfalfa biomass yield in different reference populations

description: List of barcodes needed for sequence data demultiplexing for data set PV. (TXT 13Â kb)
DOI: 10.6084/m9.figshare.c.3637283_d4
title: Additional file 7: of Accuracy of genomic selection for alfalfa biomass yield in different reference populations

description: List of barcodes, needed for sequence data demultiplexing for data set Me. (TXT 23Â kb)
DOI: 10.6084/m9.figshare.c.3637283_d7
title: Additional file 5: of Accuracy of genomic selection for alfalfa biomass yield in different reference populations

description: List of SNPs, with flanking sequences, detected in Me data set. (ZIP 2658Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d2
title: Additional file 10: Table S8. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: Selected PERNI transcripts for qPCR validation of the in silico expression levels. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.c.3637289_d4
title: Additional file 13: Tables S10. of 
                     De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum

description: GO term enrichment analysis of male- and female-biased PERNI transcripts with fold-changeâ  &gt;â  2. (XLS 47Â kb)
DOI: 10.6084/m9.figshare.28028255.v1
title: case03_sub102.EDF

description: MNE raw loading error
DOI: 10.6084/m9.figshare.28028255
title: case03_sub102.EDF

description: MNE raw loading error
DOI: 10.6084/m9.figshare.c.3637538_d1
title: Additional file 1: of Comparison of qualitative and semiquantitative strain elastography in breast lesions for diagnostic accuracy

description: Raw data. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3637544_d2
title: Additional file 1: Table A1. of Growth trajectories in the cave bear and its extant relatives: an examination of ontogenetic patterns in phylogeny

description: List of all examined crania and mandibles. ID, collection number; IDAS, individual dental age stage [37]; sex, male (m) and female (f); absolute age is given in days (d), weeks (w), months (mo), or years (y). (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3637787_d2
title: Additional file 4: of Holding it together: rapid evolution and positive selection in the synaptonemal complex of Drosophila

description: Aligned D. melanogaster population sequences from the Drosophila Genetics Reference Panel (DGRP). Sequences were aligned to D. simulans and D. yakuba. Sequences that did not align or were missing data were removed prior to the MK tests. (TXT 929Â kb)
DOI: 10.6084/m9.figshare.c.3637787_d3
title: Additional file 3: of Holding it together: rapid evolution and positive selection in the synaptonemal complex of Drosophila

description: Aligned D. melanogaster population sequences from the Drosophila Population Genomics Project (DPGP). Sequences were aligned to D. simulans and D. yakuba. Sequences that did not align or were missing data were removed prior to the MK tests. (TXT 676Â kb)
DOI: 10.6084/m9.figshare.c.3637787_d4
title: Additional file 2: of Holding it together: rapid evolution and positive selection in the synaptonemal complex of Drosophila

description: Aligned sequences of Drosophila SC genes. Text file containing the aligned sequences of each SC gene from the respective Drosophila species. Alignments were performed by MAFFT, MUSCLE, and PRANK. (TXT 1116Â kb)
DOI: 10.6084/m9.figshare.c.3638171_d2
title: Additional file 2: of Genome-wide predictors of NF-κB recruitment and transcriptional activity

description: NF-κB Target Genes (Gene Name, RefSeq Id, Ensembl Id), log 2 Fold Change (TNF stimulated vs unstimulated), Differential Expression Significance Call (TRUE/FALSE) and NF-κB Peak Detected after TNF Stimulation (TRUE/FALSE) (Data). (CSV 24 kb)
DOI: 10.6084/m9.figshare.c.3638243_d1
title: Additional file 2: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Transcriptional and translational profiles of chloroplast-encoded genes. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3638243_d3
title: Additional file 14: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Transcriptional and translational profiles of carbohydrate metabolic enzymes. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3638243_d5
title: Additional file 17: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Transcriptional and translational profiles of redox proteins. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3638243_d7
title: Additional file 18: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Transcriptional and translational profiles of respiratory system proteins. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3638243_d8
title: Additional file 19: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Pathway activities calculated based on metabolome data. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3638561_d9
title: MOESM7 of Insights into isoprene production using the cyanobacterium Synechocystis sp. PCC 6803

description: Additional file 7. Complete data set of transcriptomic analysis.
DOI: 10.6084/m9.figshare.c.3638564_d2
title: Additional file 2: of Galectin 3: association to neurohumoral activity, echocardiographic parameters and renal function in outpatients with heart failure

description: A: Comparison of plasma Galectin-3 in patients younger or equal to 70 years vs. older than 70 years, P = 0.091. B: Kruskal-Wallis test: P = 0.0116. Comparison of plasma Galectin-3 in patients with NYHA I + II vs NYHA III + IV, P = 0.234. C: Comparison of plasma Galectin-3 in patients with or without chronic kidney disease (defined as eGFR above or below 60 ml/min/m2), P
DOI: 10.6084/m9.figshare.c.3638567_d1
title: Additional file 2: Table S2. of Genomic ancestry estimation quantifies use of wild species in grape breeding

description: Matrix of genome-wide average IBS values for 64 hybrids. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3638567_d4
title: Additional file 1: Table S1. of Genomic ancestry estimation quantifies use of wild species in grape breeding

description: A list of the 78 cultivars used in this study as well as location and institute. Sample information is also provided for the additional 16 samples which were discarded during the genotyping analysis pipeline and they are highlighted in yellow. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3638579_d1
title: Additional file 1: Table S1. of Next-generation sequencing methylation profiling of subjects with obesity identifies novel gene changes

description: The 13,130 differentially methylated cytosines (DMCs; Pâ
DOI: 10.6084/m9.figshare.c.3638579_d2
title: Additional file 2: Table S2. of Next-generation sequencing methylation profiling of subjects with obesity identifies novel gene changes

description: The probes (nâ  =â  99) remaining from the microarray data that met the false discovery rate (FDR) correction criteria of Pâ
DOI: 10.6084/m9.figshare.c.3638579_d3
title: Additional file 3: Table S3. of Next-generation sequencing methylation profiling of subjects with obesity identifies novel gene changes

description: The 170 differentially methylated regions (DMRs; Pâ
DOI: 10.15468/dl.zs9zkb
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Colombia, Ecuador)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Viburnum lasiophyllum Benth."
 ]
}

 The dataset includes 33 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034131-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3638930_d3
title: MOESM3 of Genomic prediction of survival time in a population of brown laying hens showing cannibalistic behavior

description: Additional file 3. Output which includes predicted response to selection and rate of inbreeding from selAction software for traditional selection.
DOI: 10.6084/m9.figshare.c.3638930_d1
title: MOESM1 of Genomic prediction of survival time in a population of brown laying hens showing cannibalistic behavior

description: Additional file 1. Input used for selAction software to predict response to selection and rate of inbreeding for traditional selection.
DOI: 10.6084/m9.figshare.c.3638930_d2
title: MOESM4 of Genomic prediction of survival time in a population of brown laying hens showing cannibalistic behavior

description: Additional file 4. Output which includes predicted response to selection and rate of inbreeding from selAction software for genomic selection.
DOI: 10.6084/m9.figshare.c.3638930_d5
title: MOESM2 of Genomic prediction of survival time in a population of brown laying hens showing cannibalistic behavior

description: Additional file 2. Input used for selAction software to predict response to selection and rate of inbreeding for genomic selection.
DOI: 10.15468/dl.lqviac
title: Occurrence Download

description: A dataset containing 2574795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2574795 records from 979 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020073-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v3a9ke
title: Occurrence Download

description: A dataset containing 59009 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Timor-Leste"
 ]
}

 The dataset includes 59009 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153479-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wuhvgu
title: Occurrence Download

description: A dataset containing 903 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Sisymbrium septulatum DC.",
 "TaxonKey is Sisymbrium strictissimum L.",
 "TaxonKey is Sisymbrium turczaninowii Sond."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 903 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020074-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvkkhe
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xylaria rhopaloides (Kunze) Mont."
 ]
}

 The dataset includes 30 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168274-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rj7qhc
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Pterocarpus santalinoides L'Hér. ex DC."
 ]
}

 The dataset includes 146 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020074-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wkspbu
title: Occurrence Download

description: A dataset containing 1201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Panax japonicus (T.Nees) C.A.Mey."
 ]
}

 The dataset includes 1201 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005453-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.