cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fke6qs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Dendrocincla fuliginosa (Vieillot, 1818))",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016561-250525065834625/datasets/export for details.
DOI: 10.15468/dl.z36agv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Dendrocincla fuliginosa (Vieillot, 1818))",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016560-250525065834625/datasets/export for details.
DOI: 10.15468/dl.qmnsrg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Dendrocincla fuliginosa (Vieillot, 1818))",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016565-250525065834625/datasets/export for details.
DOI: 10.15468/dl.jxne5z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Dendrocincla fuliginosa (Vieillot, 1818))",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016564-250525065834625/datasets/export for details.
DOI: 10.18739/a2599z39h
title: National Science Foundation Doctoral Dissertation Research Improvement Grant 2230019, Raw Sedimentary Ancient DNA in Andy Lake, Alaska 2025

description: ### Access

Dataset can be accessed and downloaded from the directory via: [http://arcticdata.io/data/10.18739/A2599Z39H](http://arcticdata.io/data/10.18739/A2599Z39H).

### Overview

This dataset contains raw sedimentary ancient DNA (sedaDNA) sequence data and associated metadata generated from a 3-meter sediment core collected from Andy Lake, Alaska. The core was obtained during fieldwork supported by the National Science Foundation (NSF) Arctic Doctoral Dissertation Research Improvement Grant #2230019, titled Assessing the impacts of Pleistocene megaherbivores on vegetation stability and resilience in the Arctic, awarded to Principal Investigator (PI) Jacquelyn L. Gill and Co-PI Alessandro Mereghetti. The primary objective of this project is to investigate how Pleistocene megafaunal diversity influenced long-term plant community dynamics and ecosystem resilience in Arctic environments. These data contribute to understanding ecological baselines and biotic responses to past climate and extinction events, with implications for modern conservation and rewilding strategies.
DOI: 10.15468/dl.6enes5
title: Occurrence Download

description: A dataset containing 108774948 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Corvus brachyrhynchos C.L.Brehm, 1822, Cyanocitta cristata (Linnaeus, 1758), Pica nuttalli (Audubon, 1837), Turdus migratorius Linnaeus, 1766, Passer domesticus (Linnaeus, 1758), Haemorhous mexicanus (P.L.Statius Müller, 1776))",
 "BasisOfRecord is one of (Specimen, Living Specimen, Material sample, Literature Occurrence, Machine Observation, Occurrence evidence, Human Observation)",
 "Year is greater than or equal to 1960",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 108774948 records from 4764 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016553-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.vdncjsz33
title: Data for: Behavioural plasticity compensates for adaptive loss of cricket song

description: Behavioral flexibility could help animals cope with costs of genetic
 variants under selection, promoting unexpected genetic adaptation. To test
 this, we investigated how a critical acoustic communication signal – song
 – was rapidly lost due to genetic mutation in crickets exposed to lethal,
 eavesdropping parasitoids. We first determined that offspring production
 was equivalent in replicate silent versus singing populations using a
 controlled, naturalistic arena. Using our custom engineered
 high-resolution individual-based tracking system for low-light conditions,
 we found that fitness compensation in silent conditions was associated
 with increased locomotion in both sexes. Our results provide direct
 evidence that flexible behavior can promote genetic adaptation via
 compensation in reproductive output. The rapid evolution of animal
 communication systems may be less constrained than previously appreciated.
description: # Cricket tracking and demographics
 Tracking output_main:
 These data result from the tracking of multiple crickets during a three
 hour period. Cricket locations were extracted from a series of images,
 movement metrics were calculated in MATLAB and collated in this file. The
 statistical analysis was then performed in R using this dataset. Hawaii
 demographics: These data were collected on Hawaiian islands in order to
 determine the cricket density and demographics to use in the tracking
 experiment. Grids were placed in field locations and crickets were
 counted. Full methods in published article. trial_corrected.mat: This is
 the raw X/Y movement data, as output by the tracking system.
 exportDataToSpreadsheet.m This MATLAB script is used to obtain the
 movement metrics ('tracking output_main.xlsx') from the raw
 movement data. ## Description of the data and file structure Tracking
 output_main: Distance is given in pixels moved. Convert to meters by
 dividing by 4000. Time is always given in minutes. Weight is given in
 milligrams. OtherSexPropVar is the proportional variation in time spent
 near (within 10 cm) crickets of the opposite sex. Age is given in days.
 Hawaii demographics: [Sheet 1] Information on each grid placement. Not all
 measurements could be taken for each GRID, and so some values are missing.
 Temperature is given in deg C. Start and Stop are the times of searching
 starting and ending. LUX is the unit of illuminance taken at the start of
 each search. [Sheet 2] Locations of crickets found in each grid. X and Y
 coord given in centimeters within each. Type M is male (only for nymphs),
 F female, FW is flatwing male, N is normal male. Pop relates to locations
 in sheet 1. In grids where no crickets were found, a placeholder grid ID
 is provided but with empty fields.
DOI: 10.5061/dryad.7sqv9s50r
title: Code from: Fitness as the organismal performance measure guiding adaptive evolution

description: A long-standing problem in evolutionary theory is to clarify in what sense
 (if any) natural selection cumulatively improves the design of organisms.
 Various concepts, such as fitness and inclusive fitness, have been
 proposed to resolve this problem. In addition, there have been attempts to
 replace the original problem with more tractable questions such as whether
 a given gene or trait is favoured by selection. Here we ask what
 theoretical properties the concept of fitness should possess to
 encapsulate the improvement criterion required to talk meaningfully about
 adaptive evolution. We argue that natural selection tends to shape
 phenotypes based on the causal properties of individuals and that this
 tendency is, therefore, best captured by a fitness concept that focuses on
 these properties. We highlight a fitness concept that meets this role
 under broad conditions but requires adjustments in our conceptual
 understanding of adaptive evolution. These adjustments combine elements of
 Dawkinsian gene selectionism and Egbert Leigh’s “Parliament of Genes”.
description: # Code from: Fitness as the organismal performance measure guiding
 adaptive evolution
 [https://doi.org/10.5061/dryad.7sqv9s50r](https://doi.org/10.5061/dryad.7sqv9s50r) This is the Matlab code used to run the simulations presented in Figure 1B. ## Description of the data and file structure 1\. Overview The function 'nonregulatory.m' contains the main code for simulations. When contained in the same folder, this code can be called from the script 'run_nonregulatory.m' such that multiple simulation runs from different initial allelic values are executed and plotted. 2\. File list File name: nonregulatory.m Description: Main code for executing one simulation run Title: Higher-level code for executing multiple simulation runs and plotting File name: run_nonregulatory.m Description: Script that calls function 'nonregulatory.m' in an automated fashion to compute multiple simulation runs from different initial settings. Then the mean allelic values of each simulation run are plotted over time.
DOI: 10.5061/dryad.12jm63z5d
title: Expanded phylogeny of Nomadinae (Hymenoptera: Apidae) with integration of UCE and DNA barcode sequence data

description: The subfamily Nomadinae within the family Apidae is the oldest and most
 diverse clade of brood parasitic bees. Through the incorporation of data
 from a variety of sources, we generated the most detailed and
 taxonomically complete phylogeny of this group to date. Despite differing
 amounts of genetic data available for different species, the topology of
 the tree broadly agrees with expected relationships based on previous
 findings, and all major groups were recovered as monophyletic. We further
 carried out divergence time estimation to investigate the evolutionary
 history of Nomadinae and place the phylogeny along the geological time
 scale, recovering an estimated age of 99 Ma for the group. Testing for the
 effect of barcode-only taxa on estimated dates indicated that ages for
 deep nodes were robust, though the inclusion of such taxa with limited
 sequence data tended to push shallower nodes towards older dates. The
 successful integration of cytochrome oxidase DNA barcode sequences with
 modern phylogenomic (ultraconserved element) sequence data is an
 encouraging indication that the wealth of previously published data
 available through sequence repositories retains the capacity to be
 informative to future phylogenetic studies, if used appropriately.
description: # Expanded phylogeny of Nomadinae (Hymenoptera: Apidae) with integration
 of UCE and DNA barcode sequence data
 [https://doi.org/10.5061/dryad.12jm63z5d](https://doi.org/10.5061/dryad.12jm63z5d) **1. 415alltaxa_1245loci+COI_matrix.fasta** Alignment file including all 415 taxa (backbone + barcode), all 1245 UCE loci, and COI barcode sequence **2. 228ucetaxa_1245loci_noCOI_matrix.fasta** Alignment file including 228 UCE backbone taxa and all 1245 UCE loci **3. 415alltaxa_50BPloci+COI_matrix.fasta** Alignment file including all 415 taxa (backbone + barcode), and top 50 UCE loci by bipartition support **4. 415alltaxa+1245loci+COI_SWSCpartitioned.treefile** Main phylogeny including all 415 taxa (backbone + barcode), based on SWSC-EN partiioned alignment of all 1245 UCE loci and COI barcode sequence (with merged partitions) **5. 228ucetaxa_1245loci_noCOI_SWSCpartitioned.treefile** Phylogeny including 228 UCE backbone taxa, based on SWSC-EN partiioned alignment of all 1245 UCE loci (with merged partitions) **6. 415alltaxa_50BPloci_dated.tre** Time-calibrated phylogeny produced by MCMCtree based on alignment of top 50 bipartition support loci, based on tree including all 415 taxa (backbone + barcode) **7. 228ucetaxa_50BPloci_dated.tre** Time-calibrated phylogeny produced by MCMCtree based on alignment of top 50 bipartition support loci, based on tree including 228 UCE backbone taxa.
DOI: 10.5281/zenodo.18403937
title: Generalized higher-order Fano factors as non-classicality invariants

description: The files contain the data appropriate for the article 'Generalized higher-order Fano factors as non-classicality invariants' written by Jan Peřina Jr., Kishore Thapliyal, and Antonín Černoch. Dataset as well as description of the used notation is given in pairs of the files corresponding to each figure: (i) Experimental (Ex.: Fig*-Experimental) (ii) Theoretical (Ex.: Fig*-Theoretical). Data are provided for Figs. 1 and 2 in the main text and Fig. 2 in Supplemental Material.
DOI: 10.5281/zenodo.18403938
title: Generalized higher-order Fano factors as non-classicality invariants

description: The files contain the data appropriate for the article 'Generalized higher-order Fano factors as non-classicality invariants' written by Jan Peřina Jr., Kishore Thapliyal, and Antonín Černoch. Dataset as well as description of the used notation is given in pairs of the files corresponding to each figure: (i) Experimental (Ex.: Fig*-Experimental) (ii) Theoretical (Ex.: Fig*-Theoretical). Data are provided for Figs. 1 and 2 in the main text and Fig. 2 in Supplemental Material.
DOI: 10.15468/dl.y4yqj9
title: Occurrence Download

description: A dataset containing 25560 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Soil metagenome from healthy and unhealthy agricultural soil"
 ]
}

 The dataset includes 25560 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003903-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.69p8cz993
title: Data from: Thermal-metabolic relationships in hatchling snapping turtles during simulated seasonal cooling

description: There is limited information available regarding metabolic rates (MR) in
 many species or life stages of turtles. I measured MR (as O2 consumption)
 in fasted hatchling snapping turtles (Chelydra serpentina) at 5 to 25 °C.
  The relationships between temperature and MR (per capita and per
 gram wet body mass) were exponential and linearized by Log10
 transformations. The relative change in MR over a 10 °C range (Q10) varied
 with the ranges of temperatures compared and ranged from Q10, 15 to 5 =
 3.6 to Q10, 25 to 15 = 9.6 to 9.9, for per capita and per gram values,
 respectively. The high Q10 values observed here demonstrate reductions in
 metabolic activity with declining temperatures that are two to three times
 the predicted value.  Such a strong thermal dependence of MR
 suggests a rapid response to seasonal changes, facilitating energy
 conservation during cooling periods and growth during warming periods in
 this temperate reptile.
description: Data are mean values per animal from assays of metabolic rates,
 measured as oxygen consumption. Data are given in per capita and per gram
 rates.  Units for temperature = degrees Celcius; Units for wet mass =
 grams; Units for per capita metabolic rates = ul
 O<sub>2</sub>/ minute; Units for per gram metabolic rates = ul
 O<sub>2</sub>/ gram minute. Log transformed data were
 transformed by Log<sub>10</sub>. 
description: # Metabolic rates versus temperature - hatchling snapping turtles
 [https://doi.org/10.5061/dryad.69p8cz993](https://doi.org/10.5061/dryad.69p8cz993) ## Description of the data and file structure Data are average oxygen consumption rates expressed as per capita and per gram values. Measurements were made at four temperatures. Temperature units = degrees Celsius. Units for mass = grams; Units for per capita metabolic rates = ul O2/minute; Units for per gram metabolic rates = ul O2/gram minute.
DOI: 10.5061/dryad.9s4mw6mpx
title: Born with an advantage: Early life and maternal effects on fitness in Columbian ground squirrels

description: Lifetime fitness and its determinants are an important topic in the study
 of behavioural ecology and life-history evolution. Early life conditions
 comprise some of these determinants, warranting further investigation into
 their impact. In humans, for example, babies born lighter tend to have
 lower life expectancy and fewer offspring than heavier ones. Similarly,
 some of these life-history traits are passed on to offspring, with
 lighter-born females giving birth to lighter offspring. We investigated
 how weight at weaning, the relative timing of birth in the season,
 maternal weight, and maternal age affected the longevity and lifetime
 reproductive success (LRS) of female Columbian ground squirrels
 (Urocitellus columbianus). We hypothesized that early life conditions such
 as offspring weight would not only have lifetime fitness consequences but
 also intergenerational effects. We found that weight at weaning had a
 significant impact on longevity, with heavier individuals living longer.
 The relative timing of an individual’s birth did not have a significant
 association with either longevity or LRS. Individuals born to heavier
 mothers were found to have significantly higher LRS than those born to
 lighter mothers. Finally, maternal age was found to be significantly
 associated with their offspring’s LRS, with older mothers having less
 successful offspring. The latter finding may be due to an increased
 success of offspring reproductive success when their mother is still
 present. Our results provide evidence that early life conditions do have
 lifelong fitness and sometimes intergenerational consequences for
 Columbian ground squirrels. Keywords: maternal effects, longevity,
 lifetime reproductive success, early life conditions, Columbian ground
 squirrel.
description: # Born with an advantage: Early life and maternal effects on fitness in
 Columbian ground squirrels
 [https://doi.org/10.5061/dryad.9s4mw6mpx](https://doi.org/10.5061/dryad.9s4mw6mpx) Life-history data of juvenile Columbian ground squirrels collected in Sheep River Provincial Park in Alberta, Canada. ## Description of the data and file structure The data is in an Excel file containing all the data used for this article. The different cell captions are described on the second sheet of the Excel file called: tanner final 1a. A second file called Final_squirrel.R contains the R codes for the statistics and the figure plots.
DOI: 10.5061/dryad.hhmgqnkps
title: The origin, connectivity, and individual specialization of island wolves after deer extirpation

description: A wolf pack discovered on Pleasant Island in Southeast Alaska, USA defies
 the assumed obligate relationship between wolves and ungulates by
 persisting on sea otters and other marine prey after causing the local
 extirpation of deer. This pack is also subjected to additive anthropogenic
 sources of mortality in apparent isolation from other wolves. We used
 molecular methods to determine the origin of Pleasant Island wolves and
 ask how they persist under these circumstances. We applied DNA
 metabarcoding and genotyping by amplicon sequencing with a novel SNP panel
 to quantify variation in marine foraging behavior within packs, among
 sexes, and individuals using 957 scats collected from the island and the
 adjacent mainland from 2016-2022. We additionally used tissue samples to
 quantify relatedness and gene flow with reduced representation sequencing.
 Male, female, and individual island wolves all consistently consumed sea
 otter (63.2% wPOO). In contrast, mainland wolves fed on ungulates (51.8%),
 voles (19.5%), and sea otters to a lesser extent (14.3%) with more
 variation annually, among sexes and individuals, indicating both
 individual variation in the diet of a cooperatively hunting predator and
 varying hunting strategies among individuals within the same pack. We also
 found limited dispersal to and from the island with only one unrelated
 wolf coming from the mainland during the six-year study period. Our
 findings suggest wolves are more flexible in their foraging strategies
 than is commonly appreciated and that the recolonization of sea otters can
 allow wolves to persist on predominantly non-ungulate, marine resources.
 Nevertheless, anthropogenic and natural mortality, and a lack of movement
 to and from the island may threaten the continued persistence of the
 Pleasant Island wolves.
description: # Wolf diet data used in "The origin, connectivity, and individual
 specialization of island wolves after deer extirpation" Eriksson,
 C.E., Roffler, G.H., Allen, J.M., Lewis, A., and Taal Levi. ## Dataset:
 scat_wpoo.csv Each row represents a wolf scat sample. * SampleNumber =
 Unique ID for each sample. * Pack = sample was collected within the home
 range of this wolf pack. * Prey wPOO columns are the weighted percent of
 occurrence of each prey category.