cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29064530.v3
title: Public Raw Data

description: Below are the links for obtaining data, code, and software in EmbSAM:ITK-SNAP-CVE for Windows/Mac/Linux is stored on figshare.ITK-SNAP-CVE's GUI data is available at: https://drive.google.com/file/d/1F_dkQG8ReiW_mh65juWKep2KMCAXuRfR/view?usp=sharingThe instructions for viewing GUI data are as follows: https://youtu.be/XhhtBp1kBAo?si=Q2BjYOulVxjQ7p_k and<br>https://youtu.be/VrzfxgLTXeA?si=shfeB0J3Dn_8irBwFor 7 compressed wild-type embryos, 2 uncompressed wild-type embryos, and 20 RNAi-treated embryos:<br>https://drive.google.com/file/d/1HIFOrZ51F_eN-dybjgZYX4RZrqsnjd7x/view?usp=sharing<br>and<br>https://drive.google.com/drive/folders/1D3vyKu2msSrdHSghHmGV6EGZuUTm5kWv?usp=sharingThe code for generating the figures and tables in this paper is available at https://drive.google.com/drive/folders/1YlLak0EVEXr-wJ27sGMZE7NNaCcFwzVw?usp=sharingThe manually annotated ground truth used for evaluation is stored at:<br>https://drive.google.com/file/d/1B5q56sHk8sp_c1UGNF6Rhd0Os2dpGtNB/view?usp=sharingThe online code for EmbSAM is stored at:<br>https://colab.research.google.com/drive/1YVROCnaVf9Zk7v-OPO31h3Dz-IybLTIE#scrollTo=80ea7114-ea1a-47b8-ade8-aea4ddcbfc75The open-source code for EmbSAM is stored at:<br>https://github.com/CunminZhao/EmbSAM.gitIf you have any questions, please contact Guanguoye (guanguoye@gmail.com), Cunmin Zhao (zhaocunmin@gmail.com), and Zelin Li (zelinli6-c@my.cityu.edu.hk).
DOI: 10.25403/upresearchdata.29254328
title: Services social workers offer to unaccompanied refugee children in Tshwane

description: This study examined the experiences of social workers in serving this vulnerable population, the barriers they encounter, and their recommendations for enhancing service delivery. Drawing upon a human rights-based approach, this qualitative research employed semi-structured interviews with eight social workers in Tshwane, Gauteng Province, to gather in-depth perspectives on the challenges and successes in supporting unaccompanied refugee children. Purposive and snowball sampling were used to identify participants; thereafter, face-to-face interviews were conducted and recorded using a voice recorder. Data was analysed using thematic analysis.
DOI: 10.6084/m9.figshare.29255873
title: Dates and Statistical analysis

description: <b>CD30/CD30L is critical for Tfh cell differentiation and promotes antibody production against </b><b><i>Plasmodium yoelii</i></b><b> infection</b>
DOI: 10.6084/m9.figshare.29255972
title: Matlab code for topology optimization of heterogeneous lattice structures subjected to stress constraints

description: Matlab code for topology optimization of heterogeneous lattice structures subjected to stress constraints
DOI: 10.15468/dl.qejmj6
title: Occurrence Download

description: A dataset listing the 1692 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.08763 6.01271,-75.00847 6.01271,-75.00847 6.17967,-75.08763 6.17967,-75.08763 6.01271))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 1692 records were derived from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025105-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ahmev
title: Occurrence Download

description: A dataset containing 397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius unitaeniatus (Günther, 1867)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.5808 -24.13,35.5909 -24.0715,30.5701 -24.0715,30.5701 -28.5786,32.4847 -28.5786,32.55 -28.5222,33.0346 -26.8668,32.9741 -26.7838,33.0415 -26.059,32.9304 -26.0011,32.7994 -26.1281,32.6834 -26.0015,32.813 -25.8728,32.8513 -25.7166,33.3048 -25.3731,35.1489 -24.6699,35.5808 -24.13))"
 ]
}

 The dataset includes 397 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025118-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25420/britishmuseum.29184707
title: Slavica and Stipo Bejić loading their pre-heated pots for firing. Ularice.

description: Stipo and Slavica are picking the pots from the shelf (close to the ceiling) and checking them. Ash is flying in the room. They are clearing the ash from the pots as they go. Stipo starts to put large pots on their sides in the firing location.
DOI: 10.25420/britishmuseum.29184710
title: Slavica and Stipo Bejić loading their pre-heated pots for firing. Ularice.

description: Stipo and Slavica are picking the pots from the shelf (close to the ceiling) and checking them. Ash is flying in the room. They are clearing the ash from the pots as they go. Stipo starts to put large pots on their sides in the firing location.
DOI: 10.5281/zenodo.15609250
title: CLICC: A resource-effective platform for luminescence lifetime imaging of oxygen, temperature, and pH

description: Dataset Description: CLICC Platform Experimental Data

This dataset contains the experimental data supporting the conclusions presented in "A resource-effective platform for luminescence lifetime imaging of oxygen, temperature, and pH" by Gauthier Rousseau, Marianne Pons, Hessel Adelerhof, Nathan Pellerin, Mart Giesbergen, Bastien Carde, Martin Wolff, Koen Blanckaert, Sergey M. Borisov, and Benoit Fond.

The data were generated using the CLICC (Cumulative Lifetime Imaging on CMOS-Camera) platform for luminescence lifetime imaging across three applications: oxygen sensing, temperature mapping, and pH imaging. CLICC platform control code available at: https://gitlab.com/groussea/clicc

Dataset Contents:

Oxygen Sensing Data:

Calibration data: Lifetime measurements vs. oxygen partial pressure (pO₂) for PtTPTBPF-based planar optodesTime-domain reference measurements for validationRLD imaging data with different window durations (Δt = 15 μs and 25 μs)Dynamic response data from flow-through cell experimentsSpatial gradient imaging data from sediment simulation experimentsNitrogen jet response measurements

Temperature Imaging Data:

Calibration data: TADF lifetime vs. temperature for Zr(MesIPDP^t-Bu Ph)₂ nanoparticlesTime-domain reference decay measurementsRLD temperature imaging data from fluid injection experiments

pH Imaging Data:

DLR calibration data: Ratio response vs. pH using aza-BODIPY indicator and Egyptian blue referencepH gradient imaging data from buffer experimentsSigmoidal curve fitting parameters

File Formats: Raw image data (TIFF), processed lifetime maps (TIFF), calibration curves (CSV), and analysis scripts (Python).

Acquisition Parameters: All data acquired using Ximea MC050MG-SY-UB camera with SONY IMX250 sensor, synchronized with LED/laser excitation sources via Arduino R3 controller.
DOI: 10.5281/zenodo.15609251
title: CLICC: A resource-effective platform for luminescence lifetime imaging of oxygen, temperature, and pH

description: Dataset Description: CLICC Platform Experimental Data

This dataset contains the experimental data supporting the conclusions presented in "A resource-effective platform for luminescence lifetime imaging of oxygen, temperature, and pH" by Gauthier Rousseau, Marianne Pons, Hessel Adelerhof, Nathan Pellerin, Mart Giesbergen, Bastien Carde, Martin Wolff, Koen Blanckaert, Sergey M. Borisov, and Benoit Fond.

The data were generated using the CLICC (Cumulative Lifetime Imaging on CMOS-Camera) platform for luminescence lifetime imaging across three applications: oxygen sensing, temperature mapping, and pH imaging. CLICC platform control code available at: https://gitlab.com/groussea/clicc

Dataset Contents:

Oxygen Sensing Data:

Calibration data: Lifetime measurements vs. oxygen partial pressure (pO₂) for PtTPTBPF-based planar optodesTime-domain reference measurements for validationRLD imaging data with different window durations (Δt = 15 μs and 25 μs)Dynamic response data from flow-through cell experimentsSpatial gradient imaging data from sediment simulation experimentsNitrogen jet response measurements

Temperature Imaging Data:

Calibration data: TADF lifetime vs. temperature for Zr(MesIPDP^t-Bu Ph)₂ nanoparticlesTime-domain reference decay measurementsRLD temperature imaging data from fluid injection experiments

pH Imaging Data:

DLR calibration data: Ratio response vs. pH using aza-BODIPY indicator and Egyptian blue referencepH gradient imaging data from buffer experimentsSigmoidal curve fitting parameters

File Formats: Raw image data (TIFF), processed lifetime maps (TIFF), calibration curves (CSV), and analysis scripts (Python).

Acquisition Parameters: All data acquired using Ximea MC050MG-SY-UB camera with SONY IMX250 sensor, synchronized with LED/laser excitation sources via Arduino R3 controller.
DOI: 10.15468/dl.teaq2f
title: Occurrence Download

description: A dataset containing 743658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (United Kingdom of Great Britain and Northern Ireland, Denmark, Norway, Sweden, Netherlands, France)",
 "OccurrenceStatus is Present",
 "TaxonKey is Melanitta nigra (Linnaeus, 1758)"
 ]
}

 The dataset includes 743658 records from 306 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025099-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25420/britishmuseum.29183633
title: Ibro Šabanović talking about loading his kiln at Liješevo.

description: Ibro Šabanović talking about loading his kiln at Liješevo.
DOI: 10.25420/britishmuseum.29183630
title: Ibro Šabanović talking about loading his kiln at Liješevo.

description: Ibro Šabanović talking about loading his kiln at Liješevo.
DOI: 10.25420/britishmuseum.29183603
title: Ibro Šabanović loading the kiln. Liješevo

description: Ibro Šabanović loading the kiln with RC interviewing Ibro.
DOI: 10.25420/britishmuseum.29183606
title: Ibro Šabanović loading the kiln. Liješevo

description: Ibro Šabanović loading the kiln with RC interviewing Ibro.
DOI: 10.25420/britishmuseum.29183351
title: Interview with Denis Huskić, Gračanica: discussing fuel: coal and wood

description: Interview with Denis Huskić, Gračanica: discussing fuel: coal and wood
DOI: 10.25420/britishmuseum.29183354
title: Interview with Denis Huskić, Gračanica: discussing fuel: coal and wood

description: Interview with Denis Huskić, Gračanica: discussing fuel: coal and wood
DOI: 10.5281/zenodo.15382992
title: JRepair-Artifacts
DOI: 10.25420/britishmuseum.29183267
title: Ibro Šabanović talking about loading his kiln at Liješevo.

description: Ibro Šabanović talking about loading his kiln at Liješevo.
DOI: 10.25420/britishmuseum.29183270
title: Ibro Šabanović talking about loading his kiln at Liješevo.

description: Ibro Šabanović talking about loading his kiln at Liješevo.
DOI: 10.5281/zenodo.15382991
title: JRepair-Artifacts
DOI: 10.25420/britishmuseum.29183237
title: Ibro Šabanović loading the kiln. Liješevo

description: Ibro Šabanović loading the kiln with RC interviewing Ibro.
DOI: 10.25420/britishmuseum.29183240
title: Ibro Šabanović loading the kiln. Liješevo

description: Ibro Šabanović loading the kiln with RC interviewing Ibro.
DOI: 10.25420/britishmuseum.29182964
title: Interview with Denis Huskić, Gračanica: discussing fuel: coal and wood

description: Interview with Denis Huskić, Gračanica: discussing fuel: coal and wood
DOI: 10.25420/britishmuseum.29182967
title: Interview with Denis Huskić, Gračanica: discussing fuel: coal and wood

description: Interview with Denis Huskić, Gračanica: discussing fuel: coal and wood
DOI: 10.15468/dl.xjrqag
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Aonyx capensis meneleki (Thomas, 1903)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025119-250525065834625/datasets/export for details.
DOI: 10.25420/britishmuseum.29182577
title: Interview with Pero Gavran at Ularice - discussing drying

description: Interview with Pero Gavran discussing drying
DOI: 10.5281/zenodo.14906604
title: cFMDv1.2.1_mags

description: MAGs generated from the newly added 26 food metagenome datasets from publicly available studies.
DOI: 10.15468/dl.v8vq2d
title: Occurrence Download

description: A dataset containing 560405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Country is one of (Sweden, Norway, Denmark, United Kingdom of Great Britain and Northern Ireland, Netherlands, France)",
 "OccurrenceStatus is Present",
 "TaxonKey is Gavia arctica (Linnaeus, 1758)"
 ]
}

 The dataset includes 560405 records from 257 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025102-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14906603
title: cFMDv1.2.1_mags

description: MAGs generated from the newly added 26 food metagenome datasets from publicly available studies.
DOI: 10.5281/zenodo.15609377
title: cFMDv1.2.1_mags

description: MAGs generated from the newly added 26 food metagenome datasets from publicly available studies.
DOI: 10.15468/dl.bhz2jk
title: Occurrence Download

description: A dataset containing 368853 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Naturalis Biodiversity Center (NL) - Museum collection digitized at storage unit level"
 ]
}

 The dataset includes 368853 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025113-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbzw7k
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius unitaeniatus (Günther, 1867)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((31.8862 -21.3285,30.5701 -20.3186,30.5701 -24.0715,35.5909 -24.0715,35.6007 -24.0157,35.6007 -23.8125,35.4969 -23.7035,35.6007 -23.165,35.6007 -22.9702,35.227 -22.2482,34.6862 -21.6944,34.013 -21.3095,33.5 -21.1593,32.9675 -21.1092,32.4352 -21.1612,31.8862 -21.3285))"
 ]
}

 The dataset includes 225 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025121-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sru48h
title: Occurrence Download

description: A dataset containing 3714 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dioxyna Frey 1945, Dioxyna Frey, 1945, Bidens L., Enneastemon Exell)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3714 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025122-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnn86u
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Aonyx capensis hindei (Thomas, 1905)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025123-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5282/ubm/data.626
title: Supplemental Data: Predictive value of preclinical models for CAR-T cell therapy clinical trials: a systematic review and meta-analysis

description: The attached supplemental data has been used for the following preprint: https://doi.org/10.1101/2024.12.15.628103
Detailed description of data collection, aggregation and analysis can be found in the publication.

Abstract: Experimental mouse models are indispensable for the preclinical development of cancer immunotherapies, whereby complex interactions in the tumor microenvironment (TME) can be somewhat replicated. Despite the availability of diverse models, their predictive capacity for clinical outcomes remains largely unknown, posing a hurdle in the translation from preclinical to clinical success. 
This study systematically reviews and meta-analyzes clinical trials of chimeric antigen receptor (CAR)-T cell monotherapies with their corresponding preclinical studies. Adhering to PRISMA guidelines, a comprehensive search of PubMed and ClinicalTrials.gov was conducted, identifying 422 clinical trials and 3157 preclinical studies. From these, 105 clinical trials and 180 preclinical studies, accounting for 44 and 131 distinct CAR constructs, respectively, were included. 
Patients’ responses varied based on the target antigen, expectedly with higher efficacy and toxicity rates in hematological cancers. Preclinical data analysis revealed homogenous and antigen-independent efficacy rates. Our analysis revealed that only 4 % (n = 12) of mouse studies used syngeneic models, highlighting their scarcity in research. Three logistic regression models were trained on CAR structures, tumor entities, and experimental settings to predict treatment outcomes. While the logistic regression model accurately predicted clinical outcomes based on clinical or preclinical features (Macro F1 and AUC &gt; 0.8), it failed in predicting preclinical outcomes from preclinical features (Macro F1 &lt; 0.5, AUC &lt; 0.6), indicating that preclinical studies may be influenced by experimental factors not accounted for in the model. 
These findings underscore the need to better understand the experimental factors enhancing the predictive accuracy of mouse models in preclinical settings.
DOI: 10.5281/zenodo.15609254
title: Mutational profiling of the newly derived PDCLs and PDXs by whole-exome sequencing

description: Supplemental dataset for publication "A murine phase 2-like proof-of-concept study of polatuzumab vedotin in combination with venetoclax in experimental therapy of BCL2-positive aggressive lymphomas".
DOI: 10.5281/zenodo.15609255
title: Mutational profiling of the newly derived PDCLs and PDXs by whole-exome sequencing

description: Supplemental dataset for publication "A murine phase 2-like proof-of-concept study of polatuzumab vedotin in combination with venetoclax in experimental therapy of BCL2-positive aggressive lymphomas".
DOI: 10.5281/zenodo.15609319
title: Diverse environmental perturbations reveal the evolution and context-dependency of genetic effects on gene expression levels

description: This repository contains data related to:

Diverse environmental perturbations reveal the evolution and context-dependency of genetic effects on gene expression levels
Amanda J. Lea, Julie Peng, Julien F. Ayroles
A preprint of this work can be found here: https://www.biorxiv.org/content/10.1101/2021.11.04.467311v2

Specifically, the filtered, normalized, and batch corrected gene expression data file (31Mar21_all_runs_voom_resid.txt) is provided along with the metadata. We also provide the output from matrix eQTL that was used as input for mashR. Scripts used to generate and analyze these data are provided here: https://github.com/AmandaJLea/LCLs_gene_exp
DOI: 10.5281/zenodo.6595426
title: Diverse environmental perturbations reveal the evolution and context-dependency of genetic effects on gene expression levels

description: This repository contains data related to:

Diverse environmental perturbations reveal the evolution and context-dependency of genetic effects on gene expression levels
Amanda J. Lea, Julie Peng, Julien F. Ayroles
A preprint of this work can be found here: https://www.biorxiv.org/content/10.1101/2021.11.04.467311v2

Specifically, the filtered, normalized, and batch corrected gene expression data file (31Mar21_all_runs_voom_resid.txt) is provided along with the metadata. We also provide the output from matrix eQTL that was used as input for mashR. Scripts used to generate and analyze these data are provided here: https://github.com/AmandaJLea/LCLs_gene_exp
DOI: 10.5281/zenodo.6595427
title: Diverse environmental perturbations reveal the evolution and context-dependency of genetic effects on gene expression levels

description: <pre>This repository contains data related to: Diverse environmental perturbations reveal the evolution and context-dependency of genetic effects on gene expression levels Amanda J. Lea, Julie Peng, Julien F. Ayroles A preprint of this work can be found here: https://www.biorxiv.org/content/10.1101/2021.11.04.467311v2 Specifically, the filtered, normalized, and batch corrected gene expression data file (31Mar21_all_runs_voom_resid.txt) is provided along with the metadata. We also provide the output from matrix eQTL that was used as input for mashR. Scripts used to generate and analyze these data are provided here: https://github.com/AmandaJLea/LCLs_gene_exp</pre>
DOI: 10.15468/dl.x8xgmu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius unitaeniatus (Günther, 1867)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025124-250525065834625/datasets/export for details.
DOI: 10.15468/dl.pzne7u
title: Occurrence Download

description: A dataset containing 452 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Aonyx capensis capensis",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 452 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025125-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.