cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nrtm4a
title: Occurrence Download

description: A dataset containing 9691 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Alstonia scholaris (L.) R.Br."
 ]
}

 The dataset includes 9691 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000369-250226211518916/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cumtbw
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus falconeri (Kurz) Rehder"
 ]
}

 The dataset includes 67 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000358-250226211154957/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4gttux
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Anomianthus dulcis (Dunal) J.Sinclair"
 ]
}

 The dataset includes 196 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000359-250226211154957/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xekzvw
title: Occurrence Download

description: A dataset containing 38763416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Aves",
 "Year 2018-2024"
 ]
}

 The dataset includes 38763416 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000366-250226211518916/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gap56c
title: Occurrence Download

description: A dataset containing 1808 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dieffenbachia seguine (Jacq.) Schott)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 1808 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000370-250226211518916/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6d6kwh
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Nymphaea elegans Hook."
 ]
}

 The dataset includes 133 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000371-250226211518916/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14934875
title: Data and code associated with the manuscript submission titled "Enhancing kelp productivity in restoration and assisted adaptation interventions under ocean warming"
DOI: 10.5281/zenodo.14934876
title: Data and code associated with the manuscript submission titled "Enhancing kelp productivity in restoration and assisted adaptation interventions under ocean warming"
DOI: 10.5281/zenodo.14880463
title: Macrogenetic Atlas of Prokaryotes (MAP)

description: SupplementaryTables.zip

Supplementary Table 1. Genomic, population genetic parameters, and phylogenetic, phenotypic, and ecological data of 15,235 prokaryotic species based on NCBI taxonomy. The table contains two sub-tables: one with the parameter values and the other providing descriptions of these parameters. The table is in Excel format.

Supplementary Table 2. The correlation coefficient matrix of all parameters (NCBI taxonomy). The table is in Excel format.

Supplementary Table 3. Genomic, population genetic parameters, and phylogenetic, phenotypic, and ecological data of 42,470 prokaryotic species based on GTDB taxonomy. The table is in Excel format.

Supplementary Table 4. The correlation coefficient matrix of all parameters (GTDB taxonomy). The table is in Excel format.

 

MAP_rawdata.tar.gz

Whole Genome Alignments

This folder contains two subfolders: "Representative Dataset" and "Clonal Group Dataset". "Representative Dataset": Contains whole genome alignments for representative genomes of species with ≥10 representative strains. The files are named as “Species_taxid.whole_genome_aln.fasta”. "Clonal Group Dataset": Contains whole genome alignments for clonal groups with ≥10 strains. The files are named as “Species_taxid.CGid.whole_genome_aln.fasta”. Each genome is named by its "biosample-accession". Data in both datasets are compressed in 7z format. 

SNP Matrix

This folder also contains two subfolders: "Representative Dataset" and "Clonal Group Dataset". These subfolders include core-genome SNP matrix files corresponding to the whole genome alignments in the datasets mentioned above. The files are named as “Species_taxid.snp.matrix” (Representative Dataset) or “Species_taxid.CGid.snp.matrix” (Clonal Group Dataset). In each SNP matrix, rows represent SNP positions in the reference genome, and columns represent the strains. Data are compressed in 7z format.

Pangenome

This folder contains the presence/absence matrix of pan-genes (generated by Panaroo analysis) for species with ≥10 representative strains. In each matrix, rows represent pan-genes, and columns represent the representative strains. Gene presence is indicated by “1”, and gene absence by “0”. The files are named as “Species_taxid.gene_presence_absence.Rtab”. Data are compressed in gzip format.
DOI: 10.60707/p10c-4115
title: 40Ar/39Ar geochronology and thermochronology
DOI: 10.60707/m7m5-q191
title: 40Ar/39Ar geochronology and thermochronology
DOI: 10.6084/m9.figshare.25981450.v6
title: Isotopic compositions, gas ratios and MATLAB scripts

description: Understanding the complex processes that lead to oxygen depletion is challenging. The nonlinear relationship between dissolved oxygen (DO) isotopic composition (δ<sup>18</sup>O ) and its concentration makes δ<sup>18</sup>O a unique tracer for studying O2 cycling in oxygen depletion zones. Based on the DO δ<sup>18</sup>O compositions from four cruises conducted from summer 2020 to spring 2021 in the Changjiang Estuary, we identified a dynamic northern oxygen depletion zone (NODZ) with seasonally varying DO δ<sup>18</sup>O values, and a relatively stable southern oxygen depletion zone (SODZ). To quantify the contributions of low oxygen water mixing and respiration to oxygen depletion, we conducted a Monte-Carlo mixing experiment involving high salinity and low oxygen water (HSLO) and mixed layer water (MLW). Our findings indicated that HSLO mixing contributed to 59% to 100% of oxygen deficit in oxygen depletion zones, with SODZ exhibiting a HSLO mixing contribution of more than 78%. Respiration contributed to the remaining oxygen deficit, with water column respiration consuming approximately 1.5 times more oxygen than sediment oxygen consumption. In the NODZ, oxygen depletion was further enhanced by water column stratification, respiration and seafloor topography. Overall, the influx of HSLO was a key trigger for oxygen depletion in the Changjiang Estuary. The spatial and temporal variations of the two oxygen depletion zones were closely linked to the intrusion and retreat of HSLO from summer to autumn. Our findings highlight the importance of utilizing DO δ<sup>18</sup>O to differentiate and quantify biological and physical processes in coastal oxygen depletion zones.File description：Table S1: Data for this study, including latitude and longitude, sampling depth, temperature, salinity, δO<sub>2</sub>/Ar,δ<sup>18</sup>O,[O<sub>2</sub>],[O<sub>2</sub>]/[O<sub>2</sub>]<sub>sat</sub>, densityTable S3: This table presents the results of Monte-Carlo mixing experiments in all samples beneath mixed layer. The fraction of HSLO in different water masses, [O<sub>2</sub>] and δ<sup>18</sup>O after mixing from Monte-Carlo mixing experiment. Oxygen depletion caused by mixing and total oxygen depletion. The contribution of mixing and respiration to oxygen deficit. The apparent respiration fractionation factor and the proportion of WCR and SOC to oxygen deficit as well as the observed salinity, [O<sub>2</sub>] and δ<sup>18</sup>O beneath the mixed layerThe text file contains the MATLAB code for the Monte Carlo mixing experiments. It demonstrates the computational process of the Monte Carlo method using July as an example.<br>
DOI: 10.15468/dl.ubpmjy
title: Occurrence Download

description: A dataset containing 4886 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is UT-CO Freshwater Mollusks Survey"
 ]
}

 The dataset includes 4886 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000361-250226211154957/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nr3tmm
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus farinulentus (Hance) A.Camus"
 ]
}

 The dataset includes 50 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000365-250226211154957/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ahxh6x
title: Occurrence Download

description: A dataset containing 697268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Vascular Plant Herbarium: Herbarium Generale"
 ]
}

 The dataset includes 697268 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000367-250226211154957/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24gc47
title: Occurrence Download

description: A dataset containing 4886 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Buchanania arborescens (Blume) Blume"
 ]
}

 The dataset includes 4886 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000366-250226211154957/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5x7ys4
title: Occurrence Download

description: A dataset containing 5778097 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "Year is 2015",
 "Month is April"
 ]
}

 The dataset includes 5778097 records from 435 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000372-250226211518916/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/7dbybjndsw
title: Policy Uncertainty and Green Innovation

description: Replication package for "Policy Uncertainty and Green Innovation" for the Journal of Financial Economics.
DOI: 10.5517/cc1j5pt6
title: CCDC 1405658: Experimental Crystal Structure Determination

description: Related Article: Bingqing Zhu, Jian-Rong Wang, and Xuefeng Mei|2015|Cryst.Growth Des.|15|4959|doi:10.1021/acs.cgd.5b00858
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/7dbybjndsw.1
title: Policy Uncertainty and Green Innovation

description: Replication package for "Policy Uncertainty and Green Innovation" for the Journal of Financial Economics.
DOI: 10.5517/cc1j5pv7
title: CCDC 1405659: Experimental Crystal Structure Determination

description: Related Article: Bingqing Zhu, Jian-Rong Wang, and Xuefeng Mei|2015|Cryst.Growth Des.|15|4959|doi:10.1021/acs.cgd.5b00858
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1j5pw8
title: CCDC 1405660: Experimental Crystal Structure Determination

description: Related Article: Bingqing Zhu, Jian-Rong Wang, and Xuefeng Mei|2015|Cryst.Growth Des.|15|4959|doi:10.1021/acs.cgd.5b00858
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1j5rp4
title: CCDC 1405716: Experimental Crystal Structure Determination

description: Related Article: Xiaojuan Zhang, Xiuling Han, Xiyan Lu|2015|Org.Lett.|17|3910|doi:10.1021/acs.orglett.5b01894
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1j5px9
title: CCDC 1405661: Experimental Crystal Structure Determination

description: Related Article: F.H. Greenberg, A.Y. Nazarenko|2015|Acta Crystallogr.,Sect.E:Cryst.Commun.|71|o487|doi:10.1107/S2056989015011160
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1j5pyb
title: CCDC 1405662: Experimental Crystal Structure Determination

description: Related Article: In-Taek Lim, Chong-Hyeak Kim, Ki-Young Choi|2015|Polyhedron|100|43|doi:10.1016/j.poly.2015.07.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1j5pzc
title: CCDC 1405663: Experimental Crystal Structure Determination

description: Related Article: In-Taek Lim, Chong-Hyeak Kim, Ki-Young Choi|2015|Polyhedron|100|43|doi:10.1016/j.poly.2015.07.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1j5q2h
title: CCDC 1405666: Experimental Crystal Structure Determination

description: Related Article: In-Taek Lim, Chong-Hyeak Kim, Ki-Young Choi|2015|Polyhedron|100|43|doi:10.1016/j.poly.2015.07.022
description: Related Article: Yan-Jing Wang, Nian-Nian Wang, Ai-Quan Jia, Qian-Feng Zhang|2016|J.Chem.Cryst.|46|124|doi:10.1007/s10870-016-0635-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1j5q3j
title: CCDC 1405667: Experimental Crystal Structure Determination

description: Related Article: In-Taek Lim, Chong-Hyeak Kim, Ki-Young Choi|2015|Polyhedron|100|43|doi:10.1016/j.poly.2015.07.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1j5q4k
title: CCDC 1405668: Experimental Crystal Structure Determination

description: Related Article: Hong-Xia Zhang, Shi-Yu Wang, Wen-Min Wang, Hong-Ling Gao, Jian-Zhong Cui|2015|Inorg.Chem.Commun.|62|94|doi:10.1016/j.inoche.2015.10.030
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/3wfkd6rrht
title: Correlates of HIV-1 control after combination immunotherapy. Peluso et al.

description: Mass cytometry data from the paper.
DOI: 10.5517/cc1j5q5l
title: CCDC 1405669: Experimental Crystal Structure Determination

description: Related Article: Hong-Xia Zhang, Shi-Yu Wang, Wen-Min Wang, Hong-Ling Gao, Jian-Zhong Cui|2015|Inorg.Chem.Commun.|62|94|doi:10.1016/j.inoche.2015.10.030
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1j5q6m
title: CCDC 1405670: Experimental Crystal Structure Determination

description: Related Article: Hong-Xia Zhang, Shi-Yu Wang, Wen-Min Wang, Hong-Ling Gao, Jian-Zhong Cui|2015|Inorg.Chem.Commun.|62|94|doi:10.1016/j.inoche.2015.10.030
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/3wfkd6rrht.1
title: Correlates of HIV-1 control after combination immunotherapy. Peluso et al.

description: Mass cytometry data from the paper.
DOI: 10.5517/cc1j5q7n
title: CCDC 1405671: Experimental Crystal Structure Determination

description: Related Article: Hong-Xia Zhang, Shi-Yu Wang, Wen-Min Wang, Hong-Ling Gao, Jian-Zhong Cui|2015|Inorg.Chem.Commun.|62|94|doi:10.1016/j.inoche.2015.10.030
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14bg42
title: CCDC 1052733: Experimental Crystal Structure Determination

description: Related Article: Masahiro Mikuriya, Masami Fukutani, Daisuke Yoshioka|2015|X-ray.Str.Anal.Online.|31|33|doi:10.2116/xraystruct.31.33
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1j5q8p
title: CCDC 1405672: Experimental Crystal Structure Determination

description: Related Article: Masahiro Mikuriya, Masami Fukutani, Daisuke Yoshioka|2015|X-ray.Str.Anal.Online.|31|33|doi:10.2116/xraystruct.31.33
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/4fwcrz6rzm
title: R_community_env1718

description: Arthropod numbers collected in various crop ecosu=ystems associated with the environmental data
DOI: 10.5517/cc1j5q9q
title: CCDC 1405673: Experimental Crystal Structure Determination

description: Related Article: Changhui Liu, Li Zhou, Wenbo Huang, Man Wang, Yanlong Gu|2016|Tetrahedron|72|563|doi:10.1016/j.tet.2015.12.023
description: Related Article: Jian-Bei Xi, Ming-Liang Ma, Wenhao Hu|2016|Tetrahedron|72|579|doi:10.1016/j.tet.2015.11.027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1j5qbr
title: CCDC 1405674: Experimental Crystal Structure Determination

description: Related Article: Xiaobo Yu, Ligai Zhang, Xiaomei Han, Jianhui Wang, Yun Tian, Guiyan Liu|2017|J.Organomet.Chem.|833|50|doi:10.1016/j.jorganchem.2017.01.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1j5rq5
title: CCDC 1405717: Experimental Crystal Structure Determination

description: Related Article: R.A.Bredikhin, A.M.Maksimov, Yu.V.Gatilov, V.V.Kireenkov, V.E.Platonov|2015|Zh.Org.Khim.|61|1582|doi:10.1134/S1070428015110068
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/4fwcrz6rzm.1
title: R_community_env1718

description: Arthropod numbers collected in various crop ecosu=ystems associated with the environmental data