cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26037/yareta:c2rz2xbxancklnkqgvqkqbxl3a
title: Dataset for Concave P-Stereogenic Phosphorodiamidite Ligands for Enantioselective Rh(I)-Catalysis

description: The development of a new class of concave P-stereogenic phosphorodiamidite ligands, derived from Tröger Bases (TBs), is explored. These ligands, characterized by their remarkable stability and unique structural geometry around the P-atom, are used in asymmetric Rh(I)-catalyzed additions of boronic acids to NH-isatins resulting in excellent reactivities and reasonable enantioselectivity (e.r. up to 92:8).
DOI: 10.26037/yareta:og46kjflkfbphc7yks5inl4jfm
title: Franco et al., Are brain activity changes underlying the rare word production after learning specific or do they extend to semantically related rare words?

description: EEG data (pre-processed, averaged by participants in asc and ep format), stimulus information, stimulus examples and behavioral data
DOI: 10.26037/yareta:quzc47cqnvcu7jrpnymv6gfiqa
title: 3D MR images from in vivo ablation

description: The deposit contains the 3D MR images from in vivo ablation of a pig liver by high-intensity focused ultrasound. The data are composed of 2 series of dicom MR images, one before the HIFU ablation, and one after the HIFU ablation.
DOI: 10.26037/yareta:stggy6iaqva75jseoz3mcatdlq
title: Data of liver ablation by MRgHIFU

description: The folder stores the temperature and MRI data collected during the MRgHIFU project for liver ablation. The folder contains the performances tests of the HIFU transducer (electronic beam forming and performances by parts) acquired on ex vivo samples of tissue mimicking gels, and data of in vivo ablation of pig livers.
DOI: 10.26037/yareta:2hpx2oog3zbwtp3xjohufvz45a
title: Raw datasets - Ether lipids, sphingolipids and toxic 1-deoxyceramides as hallmarks for lean and obese type 2 diabetic patients

description: The worldwide increase in obesity and type 2 diabetes (T2D) represents a major health challenge. Chronically altered lipids induced by obesity further promote the development of T2D, and the accumulation of toxic lipid metabolites in serum and peripheral organs may contribute to the diabetic phenotype. To better understand the complex metabolic pattern of lean and obese T2D and non-T2D individuals, we analysed the lipid profile of human serum, skeletal muscle and visceral adipose tissue of two cohorts by systematic mass spectrometry-based lipid analysis.Lipid homeostasis was strongly altered in a disease- and tissue-specific manner, allowing us to define T2D signatures associated with obesity from those that were obesity independent. Lipid changes encompassed lyso-, diacyl- and ether-phospholipids. Moreover, strong changes in sphingolipids included cytotoxic 1-deoxyceramide accumulation in a disease-specific manner in serum and visceral adipose tissue. The high amounts of non-canonical 1-deoxyceramide present in human adipose tissue most likely come from cell-autonomous synthesis because 1-deoxyceramide production increased upon differentiation to adipocytes in mouse cell culture experiments.
Taken together, the observed lipidome changes in obesity and T2D will facilitate the identification of T2D patient subgroups and represent an important step towards personalized medicine in diabetes.
DOI: 10.26037/yareta:2wjbo7to2bgi3bzgy5agcq6vyy
title: Open Med Scholars (2)

description: This dataset is complementary to the dataset: https://doi.org/10.26037/yareta:niobwc65jrcphhgaplksfh52yi. 

This folder contains:
1.	An Excel file of the authors' raw results.
2.	 The supplementary corpus in .txt format.
3.	The corpus representing the combination of the three search queries plus the additional corpus (978 abstracts).
4.	 An image representing the word similarity or co-occurrence graph in .png
DOI: 10.26037/yareta:5rmtlmd5sreo7bmcbe44bbijfm
title: Circadian tumor infiltration and function of CD8+ T cells dictate immunotherapy efficacy

description: raw source data
DOI: 10.26037/yareta:6a3ipc245vchhcqzdpa6rqjeai
title: Analysis of peer reviewers’ response to invitations by gender and geographical region: cohort study of manuscripts reviewed at 21 biomedical journals before and during covid-19 pandemic

description: Database from second ancillary research project of the ATHENA study describing gender and geographical inequalities in invitations to review and the response to these invitations during the covid-19 pandemic.
DOI: 10.26037/yareta:ddv2leas3nd43ct3n6qwwct3mm
title: Hungary Field Research

description: Interviews
DOI: 10.26037/yareta:dpnmoplvjfginfga4djnkskefu
title: Has Telemedicine Come to Fruition? Parents’ and Pediatricians’ Perceptions and Preferences Regarding Telemedicine

description: Results from the survey administered to parents and pediatricians.
DOI: 10.26037/yareta:fgsfx2wzjfctpckbe3a3lfluu4
title: Jahn Nitschke thesis

description: Supplementary material for my thesis, such as dose-respose curves resulting from screens.
DOI: 10.26037/yareta:h3n7tiyim5ej5iitwgnultysqe
title: Study of Integrin-beta 1 acetylation in the control of endothelial cell physiology and barrier functions.

description: Datasets used in the study of Integrin beta 1 acetylation and the regulation of endothelial functions
DOI: 10.26037/yareta:imf7o2y5kvghzefwecqsemjh3y
title: ATM1, an essential conserved transporter in Apicomplexa, bridges mitochondrial and cytosolic [Fe-S] biogenesis

description: The Apicomplexa phylum encompasses numerous obligate intracellular parasites with severe implications for human health, including Plasmodium, Cryptosporidium, and Toxoplasma gondii. The iron-sulfur cluster [Fe-S] biogenesis, ISC pathway, localized within the mitochondrion or mitosome of these parasites, is vital for parasite survival and development. Previous work on T. gondii provided insights into the mechanisms of [Fe-S] biogenesis within this phylum, although the transporter linking mitochondria-generated [Fe-S] with cytosolic [Fe-S] assembly (CIA) pathway remained elusive. This critical step is catalysed by a well-conserved ABC transporter in numerous species, termed ATM1 in yeast, ATM3 in plants and ABCB7 in mammals. Here we uncover PfATM1 and TgATM1 and demonstrate its role in transporting [Fe-S] across apicomplexan parasite mitochondrial membranes. While downregulation of TgATM1 does not specifically affect mitochondrial metabolism, it impacts on [Fe-S] protein levels, indicating its role in cellular homeostasis. Depletion of TgATM1 can be complemented through expression of the well-characterized yeast homologue, ScATM1, further validating the function of the apicomplexan transporter. PfATM1's biochemical characterization shows interactions with mitochondrial ISC proteins and the cytosolic CIA protein PfNBP35, confirming it as a functional ABC transporter, modulated by oxidized glutathione (GSSG) and [4Fe-4S].
DOI: 10.26037/yareta:io5whhjo2rcibdwpku7v4e5rju
title: Multicentric evaluation of a specific intrathecal anti-Treponema pallidum IgG index as a diagnostic biomarker of neurosyphilis: results from a retro-prospective case-control study

description: The diagnosis of neurosyphilis (NS) lacks a true “gold standard”, making the diagnosis challenging while consequences of a misdiagnosis are potentially severe. The aim of this multicentric retro-prospective case-control study was to evaluate the diagnostic performance of measuring an antibody index (AI) for the intrathecal synthesis of specific anti-Treponema pallidum (T. pallidum) IgG for the diagnosis of NS.
This work has been presented as a poster at the 16th International Society of Neuroimmunology congress in August 2023 in Québec City (Canada) and at the 32nd European Academy of Dermatology and Venereology in October 2023 in Berlin
(Germany) and as an oral presentation at the Annual Meeting of the Swiss Society of Dermatology and Venereology in September 2023 in Lausanne (Switzerland).
DOI: 10.26037/yareta:k7m6eam6onapdjaii3oh3l5r2a
title: Franco_Are brain activity changes underlying the rare word production after learning specific or do they extend to semantically related rare words?_FV

description: Stimuli, code analysis, Grand-average per participants in asc and ep format, behavioral data and fitting data for single trials
DOI: 10.26037/yareta:mi7gkudzsbbohni6xgcwvb6ete
title: Bourqui, Lancheros, Assal & Laganaro 2024-Clinical-Linguistics-and-Phonetics

description: Data analysed in Bourqui, Lancheros, Assal & Laganaro (2024). The encoding of speech modes in motor speech disorders: whispered versus normal speech in apraxia of speech and hypokinetic dysarthria. Clinical Linguistics and Phonetics.
DOI: 10.26037/yareta:qbe6nnbwlbg2ne7ob43cbdkklq
title: Intestinal carbapenem-resistant Klebsiella pneumoniae undergoes complex transcriptional reprogramming following immune activation

description: Tabular data utilized for figures displayed in the above manuscript. Each workbook corresponds to the respective figure.
DOI: 10.26037/yareta:qpig6ird3jb73oup7zkmydxfce
title: Coupled hot-wire anemometer high-frequency 3D wind velocity data

description: This dataset contains point measurements of atmospheric wind 3D velocity, acquired at very high frequency (10~kHz), on top of a rooftop in a urban environment. Point measurements were taken less than 1~m apart and collected simultaneously using a system of coupled 3~components hot-wire anemometers, aligned with the main component of the wind.  

This dataset captures the spatio-temporal characteristics of atmospheric wind and turbulence at the drone operating altitudes in an urban environment.
DOI: 10.26037/yareta:sx47y72pwregdmyjncehko32qy
title: Raw datasets - Type 2 diabetes disrupts circadian orchestration of lipid metabolism and membrane fluidity in human pancreatic islets

description: Recent evidence suggests that circadian clocks ensure temporal orchestration of lipid homeostasis and play a role in pathophysiology of metabolic diseases in humans, including type 2 diabetes (T2D). Nevertheless, circadian regulation of lipid metabolism in human pancreatic islets has not been explored. Employing lipidomic analyses, we conducted temporal profiling in human pancreatic islets derived from 10 nondiabetic (ND) and 6 T2D donors. Among 329 detected lipid species across 8 major lipid classes, 5% exhibited circadian rhythmicity in ND human islets synchronized in vitro. Two-time point-based lipidomic analyses in T2D human islets revealed global and temporal alterations in phospho- and sphingolipids. Key enzymes regulating turnover of sphingolipids were rhythmically expressed in ND islets and exhibited altered levels in ND islets bearing disrupted clocks and in T2D islets. Strikingly, cellular membrane fluidity, measured by a Nile Red derivative NR12S, was reduced in plasma membrane of T2D diabetic human islets, in ND donors’ islets with disrupted circadian clockwork, or treated with sphingolipid pathway modulators. Moreover, inhibiting the glycosphingolipid biosynthesis led to strong reduction of insulin secretion triggered by glucose or KCl, whereas inhibiting earlier steps of de novo ceramide synthesis resulted in milder inhibitory effect on insulin secretion by ND islets. Our data suggest that circadian clocks operative in human pancreatic islets are required for temporal orchestration of lipid homeostasis, and that perturbation of temporal regulation of the islet lipid metabolism upon T2D leads to altered insulin secretion and membrane fluidity. These phenotypes were recapitulated in ND islets bearing disrupted clocks.
DOI: 10.26037/yareta:ti2bcdj4z5h4hay23dvlnmkfyi
title: Social skills in neurodevelopmental disorders: a study using role-plays to assess adolescents and young adults with 22q11.2 deletion syndrome and autism spectrum disorders

description: Backgrounds

Social skills are frequently impaired in neurodevelopmental disorders and genetic conditions, including 22q11.2 deletion syndrome (22q11DS) and autism spectrum disorders (ASD). Although often assessed with questionnaires, direct assessment provides a more valid estimate of the constructs. Role-plays (i.e., simulates situational settings) therefore appear to be an appropriate indicator of social skills in daily life.
Methods

This co-registered study involved 53 individuals with 22q11DS, 34 individuals with ASD, and 64 typically developing (TD) peers aged 12–30 years. All participants were assessed with role-plays as well as parent-reported questionnaires and clinical interviews focusing on social skills, functioning and anxiety.
Results

Both clinical groups showed impaired social skills compared to TD, but distinct social profiles emerged between the groups. Individuals with 22q11DS displayed higher social appropriateness and clarity of speech but weaker general argumentation and negotiation skills, with the opposite pattern observed in participants with ASD. No association was found between social skills measured by direct observation and caregiver reports. Social anxiety, although higher in clinical groups than in TD, was not associated with role-plays.
Conclusions

This study highlights the need to train social skills through tailored interventions to target the specific difficulties of each clinical population. It also highlights the importance of combining measures as they do not necessarily provide the same outcome.
DOI: 10.26037/yareta:tnynbxbghrayrjqhnrzax4ijgi
title: Integration of Wnt-inhibitory Activity and Structural Novelty Scoring Results to Uncover Novel Bioactive Natural Products: New Bicyclo[3.3.1]non-3-ene-2,9-diones from the Leaves of Hymenocardia punctata

description: NMR data of pure compounds: Nuclear Magnetic Resonance spectroscopy data of the isolated pure compounds
ECD spectral data of pure compounds: Electronic circular dichroism spectroscopy data, these are used to elucidate the absolute configuration of the structures proposed
DOI: 10.26037/yareta:tsgknwsj4bd5hah423fxw2ooem
title: Akt-driven TGF-β and DKK1 Secretion Impairs F508del CF Airway Epithelium Polarity

description: Set of data on the signaling pathways that shape the airway epithelium, the temporal interplay of which is altered in Cystic Fibrosis, leading to loss of apicobasal polarity. The effect of CFTR modulators was also investigated.
DOI: 10.26037/yareta:xc7nwhxfzjagtnyod4dit2vzki
title: Raw datasets - Circadian organization of lipid landscape is perturbed in type 2 diabetic patients 

description: Lipid homeostasis in humans follows a diurnal pattern in muscle and pancreatic islets, altered upon metabolic dysregulation. We employ tandem and liquid-chromatography mass spectrometry to investigate daily
regulation of lipid metabolism in subcutaneous white adipose tissue (SAT) and serum of type 2 diabetic (T2D)
and non-diabetic (ND) human volunteers (n = 12). Around 8% of z440 lipid metabolites exhibit diurnal rhythmicity in serum and SAT from ND and T2D subjects. The spectrum of rhythmic lipids differs between ND and
T2D individuals, with the most substantial changes observed early morning, as confirmed by lipidomics in an
independent cohort of ND and T2D subjects (n = 32) conducted at a single morning time point. Strikingly, metabolites identified as daily rhythmic in both serum and SAT from T2D subjects exhibit phase differences. Our
study reveals massive temporal and tissue-specific alterations of human lipid homeostasis in T2D, providing
essential clues for the development of lipid biomarkers in a temporal manner.
DOI: 10.26037/yareta:xthmovjv45ccxghfhkdo7oq2ai
title: Dataset for Enantiopure Boramidine for Detailed (Chir)Optical Studies

description: Inclusion of boron atoms into chiral π-conjugated systems is an effective strategy to unlock unique chiroptical properties. Herein, preparation and characterization of a configurationally stable axially-chiral boramidine are reported showcasing absorption in the UV domain, deep-blue fluorescence (Φ up to 94%), and ca. |10-3| gabs and glum values. Detailed photophysical studies and quantum-chemical calculations elucidate the deactivation pathways of the emissive state to the triplet excited states, involving increased spin-orbit coupling between S1 and T3.
DOI: 10.26037/yareta:26ty7islnfh33cwyok4fkqzvwe
title: Study of phenoxy radical couplings using the enzymatic secretome of Botrytis cinerea

description: NMR data
DOI: 10.26037/yareta:5a3ryoflg5anrnzyoczqeyq4ve
title: Modèles 3D

description: Ce dossier contient les modèles en 3 dimensions qui ont servi pour l'analyse de la capacité porteuse d'une part, et pour la visualisation.
DOI: 10.26037/yareta:bu5srl5yifbw5coquiwcuvn6ma
title: Ontologie

description: Dossier qui décrit la structure du modèle de données à appliquer pour classifier les parties de l'ouvrage, sous la forme d'une ontologie.
DOI: 10.26037/yareta:cqcfk45ilbemzdv4kuxq2nvn6a
title: DLCM Template for the SNSF Data Management Plan

description: Document qui fournit diverses recommandations pour l'établissement d'un Data Management Plan
DOI: 10.26037/yareta:d47b2igrzbgfhghgd6n543f2e4
title: Interleukin-38 overexpression limits desquamation but does not affect the global severity of imiquimod-induced skin inflammation in mice

description: Study of an epidermis-specificIL-38 overexpression in the imiquimod-induced psoriasis mouse model
DOI: 10.26037/yareta:d4c5ipdcmbfyxnc3vixavnbm7q
title: Grasshopper

description: Codes développés dans Grasshopper, l'interface de programmation visuelle de Rhinocéros 3D
DOI: 10.26037/yareta:faoj2guhnngjvh5a7tv2uzchma
title: Nuages de points sous echantillonnés

description: Ce dossier contient les données qui sont obtenues après traitement des nuages de points qui ont été collectés lors des campagnes d'acquisition des données en tout début de processus pour chaque ouvrage.
DOI: 10.26037/yareta:g6uyavqwi5cypjxgto4aautviu
title: Workflow

description: Ce dossier contient les diagrammes qui servent à décrire, sous forme graphique, le déroulement des processus depuis l'acquisition des données jusqu'à l'analyse structurelle des ouvrages, en passant par la création des modèles en 3 dimensions.
DOI: 10.26037/yareta:gabfrr35pvbz5crawlp6nd2pou
title: Analyse de la capacité porteuse

description: Ce dossier contient les modèles analytiques qui sont utilisés pour l'évaluation de la capacité porteuse des ouvrages ainsi que les rapports qui décrivent la méthodologie appliquée et les résultats obtenus pour chacun des ouvrages analysés.
DOI: 10.26037/yareta:gjrfvaftzfggxmvlwf5l6dzkhy
title: Dataset for Pd-Catalyzed [3+6+3+6] Macrocyclizations of Aryl alpha-Diazo-beta-Ketoesters

description: Thanks to Pd(II)-catalysis, an efficient synthesis of unsaturated macrocycles is achieved by [3+6+3+6] condensation of cyclic ethers with aryl alpha-diazo-beta-ketoesters. The presence of the electron-rich aryl ester moieties forbids the use of dirhodium complexes as these diazo decomposition catalysts provoke unforeseen intermolecular Csp2-H insertion reactions that derail the targeted reactivity. With Pd(acac)2, using high concentration conditions (1 M), a variety of 18-membered macrocycles (16 examples) is however afforded with both aryl and alkyl diazo reagents. Catalyst selection for either electrophilic aromatic substitution (Rh) or ylide (Pd) pathways are explained by computational approaches.
DOI: 10.26037/yareta:hnk2psdejbeejjjrxqrwbsh6o4
title: Oxidation-sensitive cysteines drive IL-38 amyloid formation

description: IL-38 regulation during oxidative stress
DOI: 10.26037/yareta:kvrmqhbny5bdfpg3mphhycdhrm
title: Short transmembrane domains target type II proteins to the Golgi apparatus and type I to the endoplasmic reticulum

description: Immunofluorescence and electron microscopy data, quantifications for the publication
DOI: 10.26037/yareta:nvjrsukqvneutg2s5djlxlqd4a
title: Analytes measured in plasma and CSF

description: List of analytes measured in plasma and CSF
DOI: 10.26037/yareta:s4ny7jnrzbfkfehosrlalkhntu
title: Cellosaurus release 49

description: Release 49 of the Cellosaurus
DOI: 10.26037/yareta:sj4bp5f7knbllf22uyt6ik2ify
title: BridgeTwin

description: Données et résultats du projet de recherche BridgeTwin (2022-2023), financé par la HES-SO.

L'objectif du projet BridgeTwin était de développer un ensemble de processus et d’outils visant à créer, de manière semi-automatique, la maquette numérique d’un pont existant à partir de nuages de points (Scan to BIM). Cette maquette numérique, enregistrée dans un format de données ouvert (IFC 4.3), peut alors être utilisée pour une grande variété d'applications, principalement liées à l'exploitation et à la maintenance de l'ouvrage.

Deux cas d'utilisation d'une maquette IFC à des fins de maintenance ont été expérimentés dans le cadre du projet BridgeTwin :

- 1 : visualisation et traçage des défauts (avec le soutien de l'Office Fédéral des Routes - OFROU).
- 2 : évaluation de la capacité portante de l'ouvrage.

L'équipe du projet BridgeTwin met ici à disposition :

- les diagrammes de processus pour l'acquisition, le Scan to BIM, et le cas d'usage "évaluation de la capacité portante de l'ouvrage" (sous-répertoire n°1).
- les nuages de points produits lors de la phase d'acquisition (sous-répertoire n°2)
- les algorithmes et jeux de données de test produits pour le Scan to BIM (sous-répertoire n°3).
- les algorithmes et jeux de données produits pour le cas d'usage "visualisation et traçage des défauts" (sous-répertoire n°4).
- les données produites pour le cas d'usage "évaluation de la capacité portante de l'ouvrage" (sous-répertoire n°5).
- les éléments de valorisation (publications, présentations, etc.) produits dans le cadre du projet (sous-répertoire n°6)


En vertu des conditions de la licence CC-BY-NC-SA-4.0, toutes les exploitations (partage, copie, reproduction, distribution, communication, réutilisation, adaptation) de l’œuvre ou des œuvres dérivées, sauf à des fins commerciales, sont possibles.

Si vous désirez exploiter les résultats du projet BridgeTwin à des fins commerciales, merci de contacter M. Bernd Domer (+41 22 558 52 54, bernd.domer@hesge.ch).
DOI: 10.26037/yareta:ubja4xykqzfjbhcfwmg7sgj2x4
title: CryoEM architecture of a near-native stretch-sensitive membrane microdomain.

description: Lipid diffusion, lipid sorting and yeast cell biology data
DOI: 10.26037/yareta:xp4zprwkebbzndi6vgmhvbbelu
title: Python

description: Codes développés en utilisant le langage de programmation Python.
DOI: 10.26037/yareta:4bcjmpoy6zavbozlhn46ckrrci
title: Warrant

description: Description of Greek Documentary Papyri: Warrant
(Version 2, 2024)

https://grammateus.unige.ch/descriptions/warrant

https://web.archive.org/web/20240613090045/https://grammateus.unige.ch/descriptions/warrant

Related archives:
- authority lists https://doi.org/10.26037/yareta:qobfo4lb2vezplc45wvydalevq
- grammateus typology https://doi.org/10.26037/yareta:pwpy6suznrdnjg67znabqr2vl4

Past version:
https://doi.org/10/grxf38
DOI: 10.26037/yareta:54zokxodvrhlthtwk26htfeyla
title: Repository for: Short communication: Resolving the discrepancy between U–Pb age estimates for the “Likhall” bed, a key level in the Ordovician timescale

description: Data repository for EGUSPHERE-2023-2597 | Short communication/technical note research article, containing code utilised, processed and raw data. https://doi.org/10.5194/egusphere-2023-2597
DOI: 10.26037/yareta:agnc5p5ce5gsfarku72jp3s4ma
title: Centrosome age breaks spindle size symmetry even in “symmetrically” dividing cells 

description: Open access data for the publication "Centrosome age breaks spindle size symmetry even in “symmetrically” dividing cells" in the Journal of Cell Biology
DOI: 10.26037/yareta:crfwhqvaxjb43p7v367ktjov3a
title: Interactions of diatom EPS-silver nanoparticles

description: Data set for Environmental Science: Nano research paper 
Diatom-Derived Extracellular Polymeric Substances Form Eco-corona and Enhance Stability of Silver Nanoparticles
DOI: 10.26037/yareta:ctwauizronbqblqy55km7gmmcu
title: Test DICOM file

description: Ceci est un test pour générer un AIP à partir d'un DICOM file