cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/hdxj9-vrg63
title: FzlA o/e

description: Raw data files of FzlA o/e
description: <strong>Tilt Series Date:</strong> 2008-12-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
  FzlAoebx50712020834K200e005.jpg: Low mag
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-6/rawdata/</p>FzlAoebx50712020834K200e005.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-6/rawdata/FzlAoebx50712020834K200e005.mrc"
        > <i class="download icon"></i> Download </a></p>

        FzlAoebx50712020834K200e0051k_full.rec,  Reconstruction (Pixel Size 1.288 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        FzlAoebx50712020834K200e0051k.rec,  Reconstruction (Pixel Size 1.288 nm), 494.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-6/3dimage_3840/FzlAoebx50712020834K200e0051k.rec"
        > <i class="download icon"></i> Download </a></p>

        dbFzlAoebx50712020834K200e0051k.rec.mrc,  Reconstruction (Pixel Size 1.288 nm), 494.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        FzlAoebx50712020834K200e005.tif,  8.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-6/file_1232/FzlAoebx50712020834K200e005.tif"
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DOI: 10.22002/eas73-sn092
title: Hn under limiting CO2 for 1 hr

description: H. neapolitanus cell h5 under limiting CO2 for 1 hour
description: <strong>Tilt Series Date:</strong> 2007-09-21</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth under limiting CO2 for 1 hour</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-21-2/rawdata/</p>Hn1h_h5_180e12um22K_21sept07.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-21-2/rawdata/Hn1h_h5_180e12um22K_21sept07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hn1h_h5_180e12um22K_21sept07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 528.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn1h_h5_180e12um22K_21sept07_bin2_s74_cbxypartial.tif,  1.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-21-2/file_1583/Hn1h_h5_180e12um22K_21sept07_bin2_s74_cbxypartial.tif"
        > <i class="download icon"></i> Download </a></p>

        Hn1h_h5_180e12um22K_21sept07_bin2_s69_stringPi.tif,  1.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-21-2/file_1586/Hn1h_h5_180e12um22K_21sept07_bin2_s69_stringPi.tif"
        > <i class="download icon"></i> Download </a></p>

        Hn1h_h5_180e12um22K_21sept07_bin2_5ave_rec.mov,  file associated to 3D Image #3937, 13.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pkeer-c1b35
title: FzlA o/e

description: division site
description: <strong>Tilt Series Date:</strong> 2008-12-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
  FzlAoebx50712020834K200e004.jpg: Low mag
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-5/rawdata/</p>FzlAoebx50712020834K200e004.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-5/rawdata/FzlAoebx50712020834K200e004.mrc"
        > <i class="download icon"></i> Download </a></p>

        FzlAoebx50712020834K200e0041k.rec,  Reconstruction (Pixel Size 1.288 nm), 422.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        FzlAoebx50712020834K200e0041k_full.rec,  Reconstruction (Pixel Size 1.288 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-5/3dimage_3834/FzlAoebx50712020834K200e0041k_full.rec"
        > <i class="download icon"></i> Download </a></p>

        dFzlAoebx50712020834K200e0041k.rec.mrc,  Reconstruction (Pixel Size 1.288 nm) Denoised, 422.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-5/3dimage_3842/dFzlAoebx50712020834K200e0041k.rec.mrc"
        > <i class="download icon"></i> Download </a></p>

        FzlAoebx50712020834K200e004.tif,  low mag, 8.4 MB  
        
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DOI: 10.22002/23qn5-c8c59
title: Hn limited in thiosulfate - t0

description: H. neapolitanus cell h6 limited in thiosulfate - t0
description: <strong>Tilt Series Date:</strong> 2006-04-11</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth limited in thiosulfate - t0</p>
  civ2006-04-11-5_slicer8243.jpg: Halothiobacillus neapolitanus .  unknown/tube/T6SS? civ2006-04-11-5_slicer8244.jpg: Halothiobacillus neapolitanus .  unknown/tube/T6SS?
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-11-5/rawdata/</p>h6p_Hncellst0_170e_15um_april11_06.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-11-5/rawdata/h6p_Hncellst0_170e_15um_april11_06.mrc"
        > <i class="download icon"></i> Download </a></p>

        h6_0h_170e_15um.rec,  Reconstruction (Pixel Size 1.2 nm), 612.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-11-5/3dimage_4122/h6_0h_170e_15um.rec"
        > <i class="download icon"></i> Download </a></p>

        ci2006-04-11-5_clip01.rec,  Reconstruction (Pixel Size 1.2 nm) cropped by Sarah, 140.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-11-5/3dimage_13073/ci2006-04-11-5_clip01.rec"
        > <i class="download icon"></i> Download </a></p>

        h6_0h_170e_15um_rec_10ave.mov,  file associated to 3D Image #4122, 36.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-11-5/file_2039/h6_0h_170e_15um_rec_10ave.mov"
        > <i class="download icon"></i> Download </a></p>

        h6_0h_170e_15um_ali.mov,  file associated to 3D Image #4122, 12.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-11-5/file_2040/h6_0h_170e_15um_ali.mov"
        > <i class="download icon"></i> Download </a></p>

        ci2006-04-11-5_clip01-label-Filament01.am,  filament segmented by Sarah, 2.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-11-5/file_2886/ci2006-04-11-5_clip01-label-Filament01.am"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3njag-2n547
title: Agro C58 22C liq_pl

description: Agrobacterium tumefaciens C58
description: <strong>Tilt Series Date:</strong> 2014-07-14</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski wild type cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown at 22C on plates then recovered in liquid for 4 hours</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-3/rawdata/</p>Agro_c58_22C_pl_liq10003.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        Agro_c58_22C_pl_liq10003_part121_2.rec,  Reconstruction (Pixel Size 0.0 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-3/file_11597/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-3/file_11598/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-3/file_11599/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer003.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-3/file_11600/slicer003.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/90bb5-1f192
title: Hn limited in thiosulfate - t0

description: H. neapolitanus cell h3 limited in thiosulfate - t0
description: <strong>Tilt Series Date:</strong> 2006-04-10</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -14.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth limited in thiosulfate - t0</p>
  civ2006-04-10-3_slicer8229.jpg: Halothiobacillus neapolitanus .  tube (17 nm) civ2006-04-10-3_slicer8230.jpg: Halothiobacillus neapolitanus .  nested vesicle civ2006-04-10-3_slicer8232.jpg: Halothiobacillus neapolitanus .  periplasmic vesicle civ2006-04-10-3_slicer8234.jpg: Halothiobacillus neapolitanus .  filament
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-10-3/rawdata/</p>h3_Hncellst0_170e_14um_april10_06.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-10-3/rawdata/h3_Hncellst0_170e_14um_april10_06.mrc"
        > <i class="download icon"></i> Download </a></p>

        h3_170e_14um.rec,  Reconstruction (Pixel Size 1.2 nm), 414.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-10-3/3dimage_4018/h3_170e_14um.rec"
        > <i class="download icon"></i> Download </a></p>

        ci2006-04-10-3_clip01.rec,  Reconstruction (Pixel Size 1.2 nm) cropped by Sarah, 86.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        h3_170e_14um_rec_ave15.mov,  file associated to 3D Image #4018, 66.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-10-3/file_1755/h3_170e_14um_rec_ave15.mov"
        > <i class="download icon"></i> Download </a></p>

        h3_170e_14um_ali.mov,  file associated to 3D Image #4018, 16.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-10-3/file_1756/h3_170e_14um_ali.mov"
        > <i class="download icon"></i> Download </a></p>

        ci2006-04-10-3_clip01-label_Filament01.am,  filament segmented by Sarah, 1.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-10-3/file_2883/ci2006-04-10-3_clip01-label_Filament01.am"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/910mr-rhx87
title: FtsA/FtsZG109S o/e

description: filament segmented by Sarah
description: <strong>Tilt Series Date:</strong> 2007-08-19</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
  zla2007-08-19-2_slicer8214.jpg: Caulobacter crescentus .  Filament (FtsA/Z) zla2007-08-19-2_slicer8215.jpg: Caulobacter crescentus .  ring (11 nm)
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-08-19-2/rawdata/</p>ftsAZ10910um34k8197001.mrc,  Tilt Series (Pixel Size 0.64 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-08-19-2/rawdata/ftsAZ10910um34k8197001.mrc"
        > <i class="download icon"></i> Download </a></p>

        ftsAZ10910um34k81970011K.rec,  Reconstruction (Pixel Size 1.28 nm), 155.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-08-19-2/3dimage_984/ftsAZ10910um34k81970011K.rec"
        > <i class="download icon"></i> Download </a></p>

        ftsAZ10910um34k8197001.tif,  tif image, 8.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-08-19-2/file_905/ftsAZ10910um34k8197001.tif"
        > <i class="download icon"></i> Download </a></p>

        zl2007-08-19-2-label-Filament01.am,  filament segmented by Sarah, 2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-08-19-2/file_3060/zl2007-08-19-2-label-Filament01.am"
        > <i class="download icon"></i> Download </a></p>

        zl2007-08-19-2-label-Filament02.am,  filament segmented by Sarah, 2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-08-19-2/file_3061/zl2007-08-19-2-label-Filament02.am"
        > <i class="download icon"></i> Download </a></p>

        zl2007-08-19-2-label-Filament03.am,  filament segmented by Sarah, 2.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-08-19-2/file_3062/zl2007-08-19-2-label-Filament03.am"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.hjcx6x
title: Occurrence Download

description: A dataset containing 13101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Dysdera crocata",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 13101 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032906-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/b9vyq-3g061
title: A22 resistant

description: Raw data files of A22 resistant
description: <strong>Tilt Series Date:</strong> 2007-10-17</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
  zla2007-10-17-5_slicer5304.jpg: Unknown filament zla2007-10-17-5_slicer5306.jpg: Unknown zla2007-10-17-5_slicer5308.jpg: Unknown zla2007-10-17-5_slicer5309.jpg: Unknown filament zla2007-10-17-5_slicer5310.jpg: Flat vesicle zla2007-10-17-5_slicer5312.jpg: Nested vesicle zla2007-10-17-5_slicer5313.jpg: Filament dividing
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-10-17-5/3dimage_1036/</p>A22res1017718k_0011k.rec,  Reconstruction (Pixel Size 2.518 nm), 335.5 MB  
        
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        A22res1017718k_001.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.1 GB  
        
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        zl2007-10-17-5_clip01.rec,  Reconstruction (Pixel Size 2.518 nm) cropped by Sarah, 158.1 MB  
        
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        A22res1017718k_001.tif,  tif image, 8.4 MB  
        
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        A22res1017718k_001.tif,  tif image, 8.4 MB  
        
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        zl2007-10-17-5_clip01-label-Filament01.am,  filament segmented by Sarah, 2.5 MB  
        
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