cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8148911
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by William Clarence Leavenworth, http://www.wikidata.org/entity/Q111527110. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q111527110
DOI: 10.5281/zenodo.8148914
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Jean Lebeau, http://www.wikidata.org/entity/Q47120914. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q47120914
DOI: 10.5281/zenodo.8148913
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Jean Lebeau, http://www.wikidata.org/entity/Q47120914. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q47120914
DOI: 10.5281/zenodo.7571413
title: Spatially Resolved Single-cell Translatomics at Molecular Resolution

description: The precise control of mRNA translation is a crucial step in post-transcriptional gene regulation of cellular physiology. However, it remains a major challenge to systematically study mRNA translation at the transcriptomic scale with spatial and single-cell resolution. Here, we report the development of RIBOmap, a three-dimensional (3D) in situ profiling method to detect mRNA translation of thousands of genes simultaneously in intact cells and tissues. By applying RIBOmap to 981 genes in HeLa cells, we revealed a remarkable dependency of translation on cell-cycle stages and subcellular localization. Furthermore, we profiled single-cell translatomes of 5,413 genes in adult mouse brain tissues yielding a spatial cell atlas of 119,173 cells. The pairwise spatial mapping of single-cell translatome and transcriptome in two adjacent mouse brain slices revealed cell-type and brain-region-dependent translational regulation and suggested a translation remodeling during oligodendrocyte lineage maturation. The spatial translatome profiling detected widespread patterns of localized translation in neuronal and glial cells in intact brain tissue networks. Together, RIBOmap presents the first spatially resolved single-cell translatomics technology, accelerating our understanding of protein synthesis in the context of subcellular architecture, cell types, and tissue anatomy.
DOI: 10.5281/zenodo.8148916
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Michael Lazarides, http://www.wikidata.org/entity/Q6012831. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6012831
DOI: 10.5281/zenodo.8148915
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Michael Lazarides, http://www.wikidata.org/entity/Q6012831. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6012831
DOI: 10.5281/zenodo.7905246
title: Preprocessed dataset of the Spatially Resolved Single-cell Translatomics at Molecular Resolution

description: Here are the pre-processed image datasets of RIBOmap included in "<strong>Spatially Resolved Single-cell Translatomics at Molecular Resolution</strong>" from Zeng et al. Please refer to the README file for more detailed information. <strong>Abstract</strong> The precise control of mRNA translation is a crucial step in post-transcriptional gene regulation of cellular physiology. However, it remains a major challenge to systematically study mRNA translation at the transcriptomic scale with spatial and single-cell resolution. Here, we report the development of RIBOmap, a three-dimensional (3D) in situ profiling method to detect mRNA translation of thousands of genes simultaneously in intact cells and tissues. By applying RIBOmap to 981 genes in HeLa cells, we revealed a remarkable dependency of translation on cell-cycle stages and subcellular localization. Furthermore, we profiled single-cell translatomes of 5,413 genes in adult mouse brain tissues yielding a spatial cell atlas of 119,173 cells. The pairwise spatial mapping of single-cell translatome and transcriptome in two adjacent mouse brain slices revealed cell-type and brain-region-dependent translational regulation and suggested a translation remodeling during oligodendrocyte lineage maturation. The spatial translatome profiling detected widespread patterns of localized translation in neuronal and glial cells in intact brain tissue networks. Together, RIBOmap presents the first spatially resolved single-cell translatomics technology, accelerating our understanding of protein synthesis in the context of subcellular architecture, cell types, and tissue anatomy.
DOI: 10.5281/zenodo.7903283
title: Preprocessed dataset of the Spatially Resolved Single-cell Translatomics at Molecular Resolution

description: Here are the pre-processed datasets of RIBOmap included in "<strong>Spatially Resolved Single-cell Translatomics at Molecular Resolution</strong>" from Zeng et al. Please refer to the README file for more detailed information. <strong>Abstract</strong> The precise control of mRNA translation is a crucial step in post-transcriptional gene regulation of cellular physiology. However, it remains a major challenge to systematically study mRNA translation at the transcriptomic scale with spatial and single-cell resolution. Here, we report the development of RIBOmap, a three-dimensional (3D) in situ profiling method to detect mRNA translation of thousands of genes simultaneously in intact cells and tissues. By applying RIBOmap to 981 genes in HeLa cells, we revealed a remarkable dependency of translation on cell-cycle stages and subcellular localization. Furthermore, we profiled single-cell translatomes of 5,413 genes in adult mouse brain tissues yielding a spatial cell atlas of 119,173 cells. The pairwise spatial mapping of single-cell translatome and transcriptome in two adjacent mouse brain slices revealed cell-type and brain-region-dependent translational regulation and suggested a translation remodeling during oligodendrocyte lineage maturation. The spatial translatome profiling detected widespread patterns of localized translation in neuronal and glial cells in intact brain tissue networks. Together, RIBOmap presents the first spatially resolved single-cell translatomics technology, accelerating our understanding of protein synthesis in the context of subcellular architecture, cell types, and tissue anatomy.
DOI: 10.5281/zenodo.7772536
title: Preprocessed dataset of the Spatially Resolved Single-cell Translatomics at Molecular Resolution

description: Here are the preprocessed datasets of RIBOmap included in "Spatially Resolved Single-cell Translatomics at Molecular Resolution" from Zeng et al.. Please refer to the README files in each compressed folder for more detailed information.
DOI: 10.5281/zenodo.8148920
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by François Léon Lefort, http://www.wikidata.org/entity/Q20558894. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q20558894
DOI: 10.5281/zenodo.8148919
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by François Léon Lefort, http://www.wikidata.org/entity/Q20558894. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q20558894
DOI: 10.5281/zenodo.8148924
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Ludwig Leichhardt, http://www.wikidata.org/entity/Q57763. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q57763
DOI: 10.5281/zenodo.8148923
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Ludwig Leichhardt, http://www.wikidata.org/entity/Q57763. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q57763
DOI: 10.5281/zenodo.8148926
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by C. Louis Leipoldt, http://www.wikidata.org/entity/Q669293. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q669293
DOI: 10.5281/zenodo.8148925
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by C. Louis Leipoldt, http://www.wikidata.org/entity/Q669293. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q669293
DOI: 10.6084/m9.figshare.23689368
title: Simulation data

description: Simulation data of Ozone in spring and summer from 2017-2020 in the Yangtze River Delta region
DOI: 10.6084/m9.figshare.23689368.v1
title: Simulation data

description: Simulation data of Ozone in spring and summer from 2017-2020 in the Yangtze River Delta region
DOI: 10.11577/1989467
title: 3D-Printed Sheet Jet for Stable Megahertz Liquid Sample Delivery at X-ray Free Electron Lasers
DOI: 10.6084/m9.figshare.23689386
title: Patients treated for Tuberculosis at Grace Children's Hospital in Haiti: January 2021- June 2022

description: This anonymized dataset reports the age, weight, diagnostic test utilization, and results of 468 patients treated for tuberculosis at Grace Children's Hospital in Haiti between January 2021 and June 2022.
DOI: 10.6084/m9.figshare.23689386.v1
title: Patients treated for Tuberculosis at Grace Children's Hospital in Haiti: January 2021- June 2022

description: This anonymized dataset reports the age, weight, diagnostic test utilization, and results of 468 patients treated for tuberculosis at Grace Children's Hospital in Haiti between January 2021 and June 2022.
DOI: 10.5281/zenodo.8148986
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Kjell E. von Sneidern, http://www.wikidata.org/entity/Q99657740. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q99657740
DOI: 10.5281/zenodo.8148985
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Kjell E. von Sneidern, http://www.wikidata.org/entity/Q99657740. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q99657740
DOI: 10.5281/zenodo.8148992
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Albin Wildt, http://www.wikidata.org/entity/Q21612692. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21612692
DOI: 10.5281/zenodo.8148991
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Albin Wildt, http://www.wikidata.org/entity/Q21612692. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21612692
DOI: 10.5517/ccdc.csd.cc1zt79b
title: CCDC 1841502: Experimental Crystal Structure Determination

description: Related Article: George R. Mckeown, Joseph G. Manion, Alan J. Lough, Dwight S. Seferos|2018|Chem.Commun.|54|8893|doi:10.1039/C8CC04658A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ztdv1
title: CCDC 1841674: Experimental Crystal Structure Determination

description: Related Article: Wei Chen, Jin Yang|2018|J.Organomet.Chem.|872|24|doi:10.1016/j.jorganchem.2018.07.029
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ztdw2
title: CCDC 1841675: Experimental Crystal Structure Determination

description: Related Article: Wei Chen, Jin Yang|2018|J.Organomet.Chem.|872|24|doi:10.1016/j.jorganchem.2018.07.029
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ztdx3
title: CCDC 1841676: Experimental Crystal Structure Determination

description: Related Article: Wei Chen, Jin Yang|2018|J.Organomet.Chem.|872|24|doi:10.1016/j.jorganchem.2018.07.029
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20ck43
title: CCDC 1858144: Experimental Crystal Structure Determination

description: Related Article: Yan-ni Lao, Shi-fang Tong, Hong-mei Chen, Shi-ping Yang|2009|Huaxue Yanjiu Yu Yingyong|21|910|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20ckdc
title: CCDC 1858152: Experimental Crystal Structure Determination

description: Related Article: Ya-guang Sun, Yong-li  Wu, Wan Yu, Shu-ting Rong, Xiao-mei Yan|2009|Huaxue Yanjiu Yu Yingyong|21|915|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20ckfd
title: CCDC 1858153: Experimental Crystal Structure Determination

description: Related Article: Ya-guang Sun, Yong-li  Wu, Wan Yu, Shu-ting Rong, Xiao-mei Yan|2009|Huaxue Yanjiu Yu Yingyong|21|915|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20ckqp
title: CCDC 1858162: Experimental Crystal Structure Determination

description: Related Article: Zhi-guo Wang, Si-man Liu, Xia Zhang, Xiu-feng Wang, Hia-xia Hang, Bao-mei Huang|2009|Huaxue Yanjiu Yu Yingyong|21|47|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20cl66
title: CCDC 1858177: Experimental Crystal Structure Determination

description: Related Article: Jessica G. K. O’Brien,  Srinivasa R. Chintala,  and Joseph M. Fox|2018|J.Org.Chem.|83|7500|doi:10.1021/acs.joc.7b02329
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20clbb
title: CCDC 1858181: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Effendy, Allan H. White|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.1322802
title: Supplementary Table 2

description: List of pseudogenes differentially expressed among CeD, FDR and Control.
DOI: 10.5517/ccdc.csd.cc20clpp
title: CCDC 1858192: Experimental Crystal Structure Determination

description: Related Article: Cui-ling Lan, Shu-hua Zhang, Jin-he Zhao, Yuan-cheng Li|2010|Huaxue Yanjiu Yu Yingyong|22|297|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.1322806
title: Supplementary Table 5A

description: Gene ontology enrichment results for differentially expressed genes among FDR, CeD and Control
DOI: 10.5517/ccdc.csd.cc1yww8z
title: CCDC 1814252: Experimental Crystal Structure Determination

description: Related Article: Yamei Fan|2018|CSD Communication|||
description: Related Article: Yamei Fan, Yanwei Ren, Jiawei Li, Chenglong Yue, Huanfeng Jiang|2018|Inorg.Chem.|57|11986|doi:10.1021/acs.inorgchem.8b01551
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/zbrf39fhm3.1
title: Data for: Distinguishing between model- and data-driven inferences for high reliability statistical predictions

description: The functions used to fit the models are bundled in an R package called tailvalidation. The user should first install this R package in R (using either the command install.packages or the drop-down menu Tools -&gt; Install packages). Then, the examples from the paper can be reproduced using the RESS_example.R file.
DOI: 10.5281/zenodo.1322807
title: Supplementary Table 5B

description: MSigDB enrichment analysis based on genes which are down-regualted consistently in FDR
DOI: 10.5281/zenodo.1322809
title: Supplementary Table 5C

description: Reactome pathway enrichment for down in FDR based on adjusted-pvalue &lt;= 0.05 and without log2(FC) criteria
DOI: 10.5281/zenodo.1322811
title: Supplementary Table 3

description: qPCR data for selected genes
DOI: 10.5281/zenodo.1322812
title: Supplementary Table 3

description: qPCR data for selected genes
DOI: 10.5517/ccdc.csd.cc1pp2p4
title: CCDC 1569396: Experimental Crystal Structure Determination

description: Related Article: Han Xu, Tian-Chen Kang, Feng Sha, Xin-Yan Wu|2018|Org.Biomol.Chem.|16|5780|doi:10.1039/C8OB01524D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ytvd0
title: CCDC 1812303: Experimental Crystal Structure Determination

description: Related Article: Hailong Xu, Hong Zhou, Lu Feng, Qiaoyun Wang, Rui Chen, Wentao Huang, Xixi Wu|2018|Dalton Trans.|47|11226|doi:10.1039/C8DT02070A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ytvf1
title: CCDC 1812304: Experimental Crystal Structure Determination

description: Related Article: Hailong Xu, Hong Zhou, Lu Feng, Qiaoyun Wang, Rui Chen, Wentao Huang, Xixi Wu|2018|Dalton Trans.|47|11226|doi:10.1039/C8DT02070A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.