cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22578844
title: Geographic peculiarities of structure and hemicloning reproduction of Pelophylax esculentus water frog complex (Anura, Ranidae) populations in the East European Plain within Ukraine

description: Geographic peculiarities of population structure and hemicloning reproduction of the water frog <em>Pelophylax esculentus</em> complex of 904 samples within southern East European Plain were analyzed. The proportion of “pure” populations of <em>P. ridibundus</em> is 0.667 against those 0.042 of <em>P. lessonae</em>. The RE-type populations are the most common among mixed populations (0.153). The colonies of the two parental species and <em>P.</em> kl. <em>esculentus </em>(REL-type), as well as those of <em>P. lessonae</em> with <em>P.</em> kl. <em>esculentus </em>(LE-type), have the frequencies 0.072 and 0.046, respectively. All-hybrid populations (E-type) are not numerous across the region (0.017). In the populations of Central, Northern and Western Ukraine, the <em>P. lessonae</em> genome is eliminated during gametogenesis within hybrids while in the Lower Dnieper and Lower Danube drainages, genome of <em>P. ridibundus</em> is eliminated. In the Eastern Ukraine populations, hybrids usually produce diploid gametes or haploid gametes with the <em>P. ridibundus</em> genome, less often with the chromosome set of <em>P. lessonae</em> only, and even more rarely a mixture of different types of gametes. The predominance of <em>P. ridibundus</em> in hybrid communities and the elimination of the <em>P. lessonae</em> genome in hybrids inevitably leads to the transformation of hybrid populations into “pure” R-type populations. This circumstance makes hybridization with <em>P. ridibundus</em> a factor in the shrinking of <em>P. lessonae</em> populations. That trend is especially expressed in the Forest steppe zone, where hybridization proceeds most intensively, the <em>P. lessonae</em> genome is eliminated in hybrids, and unstable populations with a numerical superiority of <em>P. ridibundus</em> predominate.
DOI: 10.5281/zenodo.7810663
title: hypanus_berthalutzae_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7810662
title: hypanus_berthalutzae_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.6977332
title: "Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins"

description: The deposited data for the publication "Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins". Data contains folder and sub-folders for the raw data, Main excel sheet named as "FRET-ChallengeII-MasterTable_Nat_Meth" has most of the data used in the publication. Another excel sheet has the information regarding the Figure-wise data description and where the respective data locates.
description: {"references": ["Agam, G., Gebhardt, C., Popara, M. et al. Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nat Methods 20, 523\u2013535 (2023). https://doi.org/10.1038/s41592-023-01807-0"]}
DOI: 10.5281/zenodo.7472900
title: Data deposition for "Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins"

description: The deposited data for the publication "Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins". Data contains folder and sub-folders for the raw data, Main excel sheet named as "MasterTable_FRET-Challenge-Protein-Dynamics_Nat_Meth_Agam et al" has most of the data used in the publication. Another excel sheets "Data List for FIgures for Agam et al_revised" and "Data List for Supplmentary FIgures for Agam et al_revised" have the information regarding the Figure-wise data description and where the respective data locates.
description: {"references": ["Agam, G., Gebhardt, C., Popara, M. et al. Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nat Methods 20, 523\u2013535 (2023). https://doi.org/10.1038/s41592-023-01807-0"]}
DOI: 10.5281/zenodo.6977331
title: Data deposition for "Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins"

description: The deposited data for the publication "Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins". Data contains folder and sub-folders for the raw data, Main excel sheet named as "MasterTable_FRET-Challenge-Protein-Dynamics_Nat_Meth_Agam et al" has most of the data used in the publication. Another excel sheets "Data List for FIgures for Agam et al_revised" and "Data List for Supplmentary FIgures for Agam et al_revised" have the information regarding the Figure-wise data description and where the respective data locates.
description: {"references": ["Agam, G., Gebhardt, C., Popara, M. et al. Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nat Methods 20, 523\u2013535 (2023). https://doi.org/10.1038/s41592-023-01807-0"]}
DOI: 10.5519/qd.1kt11ht1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.7810690
title: hypsolebias_longignatus_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7810689
title: hypsolebias_longignatus_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.34740/kaggle/dsv/5347452
title: Mahanagar Yatayat Dataset
DOI: 10.34740/kaggle/dsv/5143880
title: Nigeria Stock Exchange All Share Index
DOI: 10.5281/zenodo.7810712
title: myiopsitta_luchsi_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7810711
title: myiopsitta_luchsi_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7810708
title: 2022-12-07_CHiMP_Mask_R_CNN_XChem_50eph_VMXi_finetune_DICT_NZ

description: 2022-12-07_CHiMP_Mask_R_CNN_XChem_50eph_VMXi_finetune_DICT_NZ
DOI: 10.5281/zenodo.7810707
title: 2022-12-07_CHiMP_Mask_R_CNN_XChem_50eph_VMXi_finetune_DICT_NZ

description: 2022-12-07_CHiMP_Mask_R_CNN_XChem_50eph_VMXi_finetune_DICT_NZ
DOI: 10.5281/zenodo.7810724
title: nematolebias_papilliferus_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7810723
title: nematolebias_papilliferus_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7810749
title: poicephalus_rueppellii_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7810748
title: poicephalus_rueppellii_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.57967/hf/0521
title: tianpeng-dataset
DOI: 10.5281/zenodo.7810762
title: sardinella_hualiensis_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7810763
title: sardinella_hualiensis_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7810791
title: tyrannus_caudifasciatus_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7810790
title: tyrannus_caudifasciatus_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7810789
title: Vaginal microbial communities and combination efforts predict preterm birth in Chinese women

description: Elucidating the physiological and pathological characteristics of preterm birth is critical to the development of effective prediction and intervention strategies. Here, we present a nested case control study on 51 spontaneous preterm birth (sPTB) and 70 women who delivered at term. Systems-level analysis revealed bacterial compositions and functional differences between two distinct pregnancy outcomes. As expected, the vaginal environment with preterm birth was dominated by a more complex bacteria interaction network, and these interactions frequently exhibited opposite effects on different pregnancy outcomes. Furthermore, key species and combinations were identified to construct preterm birth prediction model. The final model contained three features generated from six bacteria (<em>A. christensenii</em> and <em>L. crispatus</em>; <em>B. breve</em> and <em>S. anginosus</em>; <em>P. timonensis</em> and <em>L. fermentum</em>) (AUROC = 0.942 for independent test). The AUROC value was 0.965 when white blood cell (WBC) and neutrophil (NEU) data were included. Collectively, our study provided a comprehensive characterization of the vaginal microbiome and revealed the potential utilization of bacteria in predicting the risk of preterm birth.
DOI: 10.5281/zenodo.7810788
title: Vaginal microbial communities and combination efforts predict preterm birth in Chinese women

description: Elucidating the physiological and pathological characteristics of preterm birth is critical to the development of effective prediction and intervention strategies. Here, we present a nested case control study on 51 spontaneous preterm birth (sPTB) and 70 women who delivered at term. Systems-level analysis revealed bacterial compositions and functional differences between two distinct pregnancy outcomes. As expected, the vaginal environment with preterm birth was dominated by a more complex bacteria interaction network, and these interactions frequently exhibited opposite effects on different pregnancy outcomes. Furthermore, key species and combinations were identified to construct preterm birth prediction model. The final model contained three features generated from six bacteria (<em>A. christensenii</em> and <em>L. crispatus</em>; <em>B. breve</em> and <em>S. anginosus</em>; <em>P. timonensis</em> and <em>L. fermentum</em>) (AUROC = 0.942 for independent test). The AUROC value was 0.965 when white blood cell (WBC) and neutrophil (NEU) data were included. Collectively, our study provided a comprehensive characterization of the vaginal microbiome and revealed the potential utilization of bacteria in predicting the risk of preterm birth.
DOI: 10.5519/qd.hd67nju1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (10931 records)
DOI: 10.5281/zenodo.7810813
title: Convergent approaches to AI Explainability for HEP muonic particles pattern recognition Dataset

description: Dataset associated to the publication "Convergent approaches to AI Explainability for HEP muonic particles pattern recognition", Leandro Maglianella, Lorenzo Nicoletti, Stefano Giagu*, Christian Napoli, and Simone Scardapane, submitted to Computing and Software for Big Science. *corresponding author: stefano.giagu [AT] uniroma1.it Description: provided as a compressed zip file. Contains 7 numpy .npy files: train_images_with_noise.npy: numpy array containing 850003 "images" of muonic tracks with detector noise (shape (850003, 9, 384)). Each image contains 1 muonic track. train_images_without_noise.npy: numpy array containing 850003 "images" of muonic tracks w/o detector noise (shape (850003, 9, 384)). Each image contains 1 muonic track. train_labels.npy: labels associated to each image (shape (850003, 5)), corresponding to (pT, eta, phi, 0, nhits) of the muonic track, with pT: transverse momentum, eta: pseudo-rapidity, phi: azimuthal angle, and nhits: the number of pixels turned on by the muon test_images_with_noise.npy: same as above for a 94445 images test set test_images_without_noise.npy: same as above for a 94445 images test set test_labels.npy: same as above for a 94445 images test set images_only_noise.npy: numpy array containing 944448 "images" w/o muons, containing detector noise only (shape (944448, 9, 384))
description: This research was funded by the CHIST-ERA grant number CHIST-ERA-19-XAI- 009.
DOI: 10.5281/zenodo.7810812
title: Convergent approaches to AI Explainability for HEP muonic particles pattern recognition Dataset

description: Dataset associated to the publication "Convergent approaches to AI Explainability for HEP muonic particles pattern recognition", Leandro Maglianella, Lorenzo Nicoletti, Stefano Giagu*, Christian Napoli, and Simone Scardapane, submitted to Computing and Software for Big Science. *corresponding author: stefano.giagu [AT] uniroma1.it Description: provided as a compressed zip file. Contains 7 numpy .npy files: train_images_with_noise.npy: numpy array containing 850003 "images" of muonic tracks with detector noise (shape (850003, 9, 384)). Each image contains 1 muonic track. train_images_without_noise.npy: numpy array containing 850003 "images" of muonic tracks w/o detector noise (shape (850003, 9, 384)). Each image contains 1 muonic track. train_labels.npy: labels associated to each image (shape (850003, 5)), corresponding to (pT, eta, phi, 0, nhits) of the muonic track, with pT: transverse momentum, eta: pseudo-rapidity, phi: azimuthal angle, and nhits: the number of pixels turned on by the muon test_images_with_noise.npy: same as above for a 94445 images test set test_images_without_noise.npy: same as above for a 94445 images test set test_labels.npy: same as above for a 94445 images test set images_only_noise.npy: numpy array containing 944448 "images" w/o muons, containing detector noise only (shape (944448, 9, 384))
description: This research was funded by the CHIST-ERA grant number CHIST-ERA-19-XAI- 009.
DOI: 10.5517/ccdc.csd.cc29wpws
title: CCDC 2141786: Experimental Crystal Structure Determination

description: Related Article: Promeet K. Saha, Abhijit Mallick, Andrew T. Turley, Aisha N. Bismillah, Andrew Danos, Andrew P. Monkman, Alyssa-Jennifer Avestro, Dmitry S. Yufit, Paul R. McGonigal|2023|Nature Chemistry|15|516|doi:10.1038/s41557-023-01149-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29wpxt
title: CCDC 2141787: Experimental Crystal Structure Determination

description: Related Article: Promeet K. Saha, Abhijit Mallick, Andrew T. Turley, Aisha N. Bismillah, Andrew Danos, Andrew P. Monkman, Alyssa-Jennifer Avestro, Dmitry S. Yufit, Paul R. McGonigal|2023|Nature Chemistry|15|516|doi:10.1038/s41557-023-01149-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29wpyv
title: CCDC 2141788: Experimental Crystal Structure Determination

description: Related Article: Promeet K. Saha, Abhijit Mallick, Andrew T. Turley, Aisha N. Bismillah, Andrew Danos, Andrew P. Monkman, Alyssa-Jennifer Avestro, Dmitry S. Yufit, Paul R. McGonigal|2023|Nature Chemistry|15|516|doi:10.1038/s41557-023-01149-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29wpzw
title: CCDC 2141789: Experimental Crystal Structure Determination

description: Related Article: Promeet K. Saha, Abhijit Mallick, Andrew T. Turley, Aisha N. Bismillah, Andrew Danos, Andrew P. Monkman, Alyssa-Jennifer Avestro, Dmitry S. Yufit, Paul R. McGonigal|2023|Nature Chemistry|15|516|doi:10.1038/s41557-023-01149-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29wq0y
title: CCDC 2141790: Experimental Crystal Structure Determination

description: Related Article: Promeet K. Saha, Abhijit Mallick, Andrew T. Turley, Aisha N. Bismillah, Andrew Danos, Andrew P. Monkman, Alyssa-Jennifer Avestro, Dmitry S. Yufit, Paul R. McGonigal|2023|Nature Chemistry|15|516|doi:10.1038/s41557-023-01149-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29wq1z
title: CCDC 2141791: Experimental Crystal Structure Determination

description: Related Article: Promeet K. Saha, Abhijit Mallick, Andrew T. Turley, Aisha N. Bismillah, Andrew Danos, Andrew P. Monkman, Alyssa-Jennifer Avestro, Dmitry S. Yufit, Paul R. McGonigal|2023|Nature Chemistry|15|516|doi:10.1038/s41557-023-01149-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29wq20
title: CCDC 2141792: Experimental Crystal Structure Determination

description: Related Article: Promeet K. Saha, Abhijit Mallick, Andrew T. Turley, Aisha N. Bismillah, Andrew Danos, Andrew P. Monkman, Alyssa-Jennifer Avestro, Dmitry S. Yufit, Paul R. McGonigal|2023|Nature Chemistry|15|516|doi:10.1038/s41557-023-01149-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29wq31
title: CCDC 2141793: Experimental Crystal Structure Determination

description: Related Article: Promeet K. Saha, Abhijit Mallick, Andrew T. Turley, Aisha N. Bismillah, Andrew Danos, Andrew P. Monkman, Alyssa-Jennifer Avestro, Dmitry S. Yufit, Paul R. McGonigal|2023|Nature Chemistry|15|516|doi:10.1038/s41557-023-01149-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/5348817
title: Balochi Language to English Translation Dataset
DOI: 10.34740/kaggle/dsv/4314001
title: Water level in São Paulo Dam
DOI: 10.6084/m9.figshare.22260319
title: Table A-4 HSD and EDS Self-Care Recommendations

description: Each participant’s self-care regime was assessed throughout the 9-week program. Recommendations were made as needed, as listed in Table A-4.
DOI: 10.6084/m9.figshare.22260319.v4
title: Table A-4 HSD and EDS Self-Care Recommendations

description: Each participant’s self-care regime was assessed throughout the 9-week program. Recommendations were made as needed, as listed in Table A-4.
DOI: 10.5281/zenodo.7359122
title: A comprehensive database on experimental electron backscattering coefficients from solids

description: The database provides values of electron backscattering coefficient for 50 elements and 19 compounds at electron energies from 0.1keV to 15MeV.
DOI: 10.5281/zenodo.7590691
title: Photographs of the bombed-out school of Addilal – symbol for three years without schools in Tigray (Ethiopia)

description: On Tuesday 22 June 2021, the Ethiopian Air Force targeted the market place of Addilal in Tigray’s Gheralta district (north Ethiopia). Fortunately, the bomb missed the market, but it fell on the school compound. There were no students in school, as all schools in Tigray are closed since 2020. Damages to the school buildings were considerable. Up to date, the bombed-out Addilal school stands unused, as a symbol for these three years without schools in Tigray. Here we share a six exclusive photographs of the Addilal school.
DOI: 10.5281/zenodo.7590690
title: Photographs of the bombed-out school of Addilal – symbol for three years without schools in Tigray (Ethiopia)

description: On Tuesday 22 June 2021, the Ethiopian Air Force targeted the market place of Addilal in Tigray’s Gheralta district (north Ethiopia). Fortunately, the bomb missed the market, but it fell on the school compound. There were no students in school, as all schools in Tigray are closed since 2020. Damages to the school buildings were considerable. Up to date, the bombed-out Addilal school stands unused, as a symbol for these three years without schools in Tigray. Here we share a six exclusive photographs of the Addilal school.
DOI: 10.5517/ccdc.csd.cc29wq42
title: CCDC 2141794: Experimental Crystal Structure Determination

description: Related Article: Promeet K. Saha, Abhijit Mallick, Andrew T. Turley, Aisha N. Bismillah, Andrew Danos, Andrew P. Monkman, Alyssa-Jennifer Avestro, Dmitry S. Yufit, Paul R. McGonigal|2023|Nature Chemistry|15|516|doi:10.1038/s41557-023-01149-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29wq53
title: CCDC 2141795: Experimental Crystal Structure Determination

description: Related Article: Promeet K. Saha, Abhijit Mallick, Andrew T. Turley, Aisha N. Bismillah, Andrew Danos, Andrew P. Monkman, Alyssa-Jennifer Avestro, Dmitry S. Yufit, Paul R. McGonigal|2023|Nature Chemistry|15|516|doi:10.1038/s41557-023-01149-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29wq64
title: CCDC 2141796: Experimental Crystal Structure Determination

description: Related Article: Promeet K. Saha, Abhijit Mallick, Andrew T. Turley, Aisha N. Bismillah, Andrew Danos, Andrew P. Monkman, Alyssa-Jennifer Avestro, Dmitry S. Yufit, Paul R. McGonigal|2023|Nature Chemistry|15|516|doi:10.1038/s41557-023-01149-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b4tw6
title: CCDC 2149598: Experimental Crystal Structure Determination

description: Related Article: Pallabita Basu|2022|CSD Communication|||
description: Related Article: Pallabita Basu, Nishikant Satam, Soumyaranjan Pati, Alati Suresh, Irishi N. N. Namboothiri|2022|J.Org.Chem.|88|4038|doi:10.1021/acs.joc.2c00816
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.