cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0q7pc/6
title: Figure 6

description: Predicted area and known geographic distribution (A) used to develop distributional models of Ancash (B), Ayacucho (C), Cusco (D), L. tacnae (E), and  L. walkeri (F).
DOI: 10.5061/dryad.0q7pc/7
title: Figure 7.

description: ROC curves and AUC values for (A) Ancash, (B) Ayacucho, (C) Cusco, (D) L. tacnae and (E) L. walkeri.
DOI: 10.5061/dryad.0q7pc/8
title: Figure 8.

description: Dorsal (A) and ventral (B) views of the holotype of Liolaemus chavin sp. n. (C) Type locality.
DOI: 10.5061/dryad.0q7pc/9
title: Figure 9.

description: Lateral (A), dorsal (B), and ventral (C) views of the holotype of Liolaemus pachacutec sp. n.. (D) Habitat of L. pachacutec
DOI: 10.5061/dryad.14fn1/1
title: Coordinate data of crocodylian crania (pre-superimposed)

description: Coordinate data of 78 three-dimensional landmarks from 204 cranial specimens of 10 extant crocodylian species. All specimens, with the exception of Gavialis and Tomistoma, are from non-captive individuals. Raw coordinate data were collected with a G2 Microscribe digitzer (Immersion Corporation, CA, USA) by the principal author (A.W.). The coordinate data is in NTSYS format, in which the digitized specimens have been aligned according to PC axes (x axis = anteroposterior; y axis = mediolateral; z axis=dorsoventral), but still retain their original size. The coordinate points, therefore, have not been subjected to generalized Procrustes superimposition, allowing the user to calculate centroid size. Specimens are labeled in the file with species ID (first three letters of generic and specific names; e.g., allmis = Alligator mississippiensis) followed by their respective institutional specimen number. Please refer to the main article and associated supplementary text file for description of landmarks and additional information on the acquisition and treatment of data.
DOI: 10.5061/dryad.14fn1/2
title: PermuTree

description: Python program for performing a permutational regression analysis on trees. It takes a NEWICK string file and a CSV file of a single continuous variable and tests for significant correlation between phenotypic and phylogenetic distances. Please note that this script was written in Python version 2.7, thus some commands may not run properly (e.g., print function). In addition, the script requires the tree.py module to run, which can be downloaded through Peter Beerli's website (see README), as well as matplotlib and scipy Python packages.
DOI: 10.5061/dryad.14fn1/3
title: Tree Comparison Test (SPR)

description: Script written for the TNT phylogenetic program for testing the significant of topological similarity between two trees relative to randomly generated tree topologies. After placing the script in the same directory as TNT, analysis is performed by running "comptreeSPR    " in the command line.
DOI: 10.5061/dryad.14hj1/2
title: DRYAD_Metabolism

description: Metabolic rate collected one vipers neonates at one month of age
DOI: 10.5061/dryad.14hj1/3
title: DRYAD_Explo

description: Exploratory behaviour measured in neonates snakes from the different thermal treatments. Data collected at birth in the laboratory.
DOI: 10.5061/dryad.14hj1/4
title: DRYAD_First prey

description: Score of first prey acceptance in aspic viper neonates. Data collected 5 month after birth in the laboratory.
DOI: 10.5061/dryad.14hj1/5
title: DRYAD_Traction

description: Traction force measured in aspic vipers one month after birth.
DOI: 10.5061/dryad.14nn1/1
title: DataHechingerFig2

description: Data underlying Fig 2 in the manuscript. See ReadMe file for metadata.
DOI: 10.5061/dryad.14nn1/2
title: DataHechingerFig3

description: Data underlying Fig 3 of manuscript. For metadata, see ReadMe file associated with DataHechingerFig2.txt.
DOI: 10.5061/dryad.15r7f/1
title: MHC alleles and STR genotypes of wolves in Italy
DOI: 10.5061/dryad.164dg/1
title: SNP genotyping assay design

description: Sequenom MassArray Assay Design for multiplexed SNP genotyping
DOI: 10.5061/dryad.164dg/2
title: Genomic clines
DOI: 10.5061/dryad.1nc50/1
title: Heliconius erato emma (Peru) images
DOI: 10.5061/dryad.1nc50/2
title: Heliconius erato favorinus (Peru) images
DOI: 10.5061/dryad.2247c/1
title: 13-0270_Microsat_Data

description: Multilocus genotypes (10 microsatellite loci) obtained from Symbiodinium associated with the Caribbean reef corals Orbicella (Montastraea) and Siderastrea siderea.
DOI: 10.5061/dryad.2247c/2
title: 13-0270_Clade C_ITS2

description: Nexus file of ITS2 and partial 5.8S sequence of closely related Symbiodinium from the Atlantic and Pacific Oceans investigated during this research.
DOI: 10.5061/dryad.2247c/3
title: 13-0270_C1_radiation_psbA

description: Nexus file of alignments of partial sequences (approximately 450 to 550 bases) of the non coding region of the psbA minicircle (unique to dinoflagellates). This alignment composes Symbiodinium members of the C1-group.
DOI: 10.5061/dryad.2247c/4
title: 13-0270_C3_radiation_psbA

description: Nexus file of alignments of partial sequences (approximately 450 to 550 bases) of the non coding region of the psbA minicircle (unique to dinoflagellates). This alignment composes Symbiodinium members of the C3-group.
DOI: 10.5061/dryad.33kn3/1
title: Point distribution for Australian Acacia species

description: Source: Australia's Virtual Herbarium. 170,000 digitissed records of Acacia species distributions, Australia.
DOI: 10.5061/dryad.3c190/10
title: 9/15 RNAseq file
DOI: 10.5061/dryad.3c190/11
title: 10/15 RNAseq file
DOI: 10.5061/dryad.3c190/12
title: 11/15 RNAseq file
DOI: 10.5061/dryad.3c190/13
title: 12/15 RNAseq file
DOI: 10.5061/dryad.3c190/14
title: 13/15 RNAseq file
DOI: 10.5061/dryad.3c190/15
title: 14/15 RNAseq file
DOI: 10.5061/dryad.3c190/16
title: 15/15 RNAseq file
DOI: 10.5061/dryad.3f2s5/1
title: Raw data describing upregulation of testosterone synthesis in male rats infected with Toxoplasma gondii

description: First worksheet of this file ("DeltaCt") contains results obtained form a quantitative PCR to estimate mRNA abundance of testes enzymes involved in steroidogeneis. Delta Ct values between target gen and reference (GAPDH) are given. The second and third worksheets ("T Testes" and "T serum", respectively) depicts amount of testosterone measured by EIA in testes and serum of control and infected animals. Finally, the fourth worksheet lists level of aversion of cat odor in control and infected animals, with or without castration. It depicts % occupancy in cat arm of the arena, relative to sum to cat and rabbit arms.
DOI: 10.5061/dryad.3hq2c/1
title: Duncan_Paramecium_data_7_13

description: Data describing Paramecium dynamics
DOI: 10.5061/dryad.3hq2c/2
title: Duncan_Paramecium_Time_7_13

description: Data for Paramecium temporal analyses
DOI: 10.5061/dryad.3hq2c/3
title: Duncan_parasite_7_13

description: File describing parasite population parameters
DOI: 10.5061/dryad.3hq2c/4
title: Duncan_Parasite_time_07_13

description: Data for analysis of parasite temporal analyses
DOI: 10.5061/dryad.4nt8m/1
title: For_DRYAD

description: The file is a zip archive of four files: Wolbachia_phylogenomic_90genes_concatenate.faa (the catenated aminoacid alignemtn of 90 genes), Wolbachia_phylogenomic_90genes_concatenate.ffn (the catenated nucleic acid alignemtn of 90 genes), Wolbachia_phylogenomic_OrthoMCL_cluster_aminoacidic_multifastas.zip (a zip file of the amino acid/protein sequences of clusters generated from the Wolbachia genomes using orthoMCL) and Wolbachia_phylogenomic_OrthoMCL_cluster_nucleotidic_multifastas.zip (a zip file of the nucleic acid sequences of clusters generated from the Wolbachia genomes using orthoMCL)
DOI: 10.5061/dryad.568kn/1
title: Bensonetal.CanisHybridZoneMicrosatelliteData

description: Microsatellite Allele data collected from individual wolves, coyotes, and hybrids (each has individual id, data on separate rows) in central Ontario.
DOI: 10.5061/dryad.568kn/2
title: Bensonetal.CanisHybridZoneLandscapeData

description: Ancestry and environmental data associated with resident wolves, coyotes, and hybrids tracked in and adjacent to APP, 2004-2011
DOI: 10.5061/dryad.568kn/3
title: Bensonetal.CanisHybridZoneBodyMassData

description: Body Mass data for captured wolves, coyotes, hybrids.  EW = eastern wolf, Gray = gray wolf.
DOI: 10.5061/dryad.5df61/1
title: Soranno-MI-NUTR-CRITERIA-2008
DOI: 10.5061/dryad.6t450/1
title: precocial bird and crocodile data

description: Data used in the allometric analyses of the relationship between body mass and clutch mass
DOI: 10.5061/dryad.7bn0fr99/1
title: Luperosaurus Alignment File

description: Alignment files used in phylogenetic analyses. The character sets are provided in brackets at the end of the file.
DOI: 10.5061/dryad.87tk7/1
title: Female response data

description: This file contains the response data for female Oecanthus crickets from multiple sites in North America. The corresponding male data (and original recordings) are archived at the Macaulay Library of Natural Sound. For the female data, the first columns gives the species and collection locality (collection site GPS coordinates are in the associated manuscript). The next column is a unique identifier for the individual cricket. The following column gives the pulse rate of the stimulus that was played to the insect and the final column gives the female response score. The response score is the amount of time remaining in a 120 second trial when the cricket made contact with the speaker. (For example, if a female responded in 24 seconds, the response score would be 120-24=96). By calculating scores in this way, females that responded quickly had high response scores, females that responded slowly had low response scores, and females that did not respond had a response time of zero.
DOI: 10.5061/dryad.bj376f61/4
title: uu_bk_uniq#_sort
DOI: 10.5061/dryad.bj376f61/5
title: uu_uniq#_sort_sequence_data
DOI: 10.5061/dryad.bj376f61/6
title: uu_uniq#_sort_l60c99_clean_rc_tag#
DOI: 10.5061/dryad.bj376f61/7
title: uu_bk_uniq#_sort_l60c99_clean_rc_tag#
DOI: 10.5061/dryad.bj376f61/8
title: uu_uniq_filtered_data
DOI: 10.5061/dryad.bj376f61/9
title: uu_bk_filtered_data
DOI: 10.5061/dryad.cn252/1
title: Vector fields of flapping and gliding swifts

description: Flow measurements behind swifts (Apus apus) in flapping and gliding flight in the Lund University wind tunnel. The data are in the form of vector fields in DaVis VC7-format. The zipped file contains two folders, one holding all the sequences from the flapping flight experiments and one all the sequences from the gliding flight experiments. Each of these folders contains sub-folders with names corresponding to the flight speed examined during measurements. Inside these subfolders sequences are located and the names of each of them show time and date of acquisition and the major processing steps performed in DaVis. Only sections within these sequences corresponding to steady flight where the complete semi wake span is present were used for analysis.
DOI: 10.5061/dryad.dc25r/1
title: Frog Information

description: File InformationThe Frog.csv data set includes information on each of the 68,359 individual amphibians surveyed for this effort. Information on data in each column is in the ReadMe file.
DOI: 10.5061/dryad.dc25r/2
title: Blank Data Sheets Used For Project

description: This excel file contains multiple tabs so that users may print the data sheets we used for the project. Additional information on how to use the sheets to collect data is included in our Field SOPs document.
DOI: 10.5061/dryad.dc25r/3
title: Abnormality Classification Standard Operating Procedures

description: This file describes how abnormalities were classified for analysis, all data files use information that relied on these methods for abnormality classification.
DOI: 10.5061/dryad.dc25r/4
title: USFWS Field Standard Operating Procedures

description: This document describes how data were collected for the project.
DOI: 10.5061/dryad.dc25r/5
title: SOP Revisions in 2011

description: Limited changes were made to the field Standard Operating Procedures document in 2011. Some of these changes incorporated lessons learned during the project; we are therefore sharing them in case they are useful to researchers in the future.
DOI: 10.5061/dryad.dc25r/6
title: All Collections

description: File InformationThe All_Collections.csv data set includes information on each of the 1,477 individual collection events included in this effort. Information on each column is included in the ReadMe file.
DOI: 10.5061/dryad.dc25r/7
title: Core Dataset

description: File InformationThe Core_Dataset.csv file includes information on the 675 collection events included in most statistical analyses presented in our PLoS One paper. See methods section of the paper for the steps by which we created the "Core Dataset" from the "All_Collections" dataset. Information on each column is included in the ReadMe file.
DOI: 10.5061/dryad.dc25r/8
title: Site

description: File Information---This file contains information on all sites at which at least one frog was examined for this survey.
DOI: 10.5061/dryad.dc25r/9
title: SpeciesNames

description: This is a link file from the species codes used in the other data files to the scientific and common names for each species.
DOI: 10.5061/dryad.fh505/1
title: Spatial distribution of Meroplanktonic larvae. A Canadian Healthy Oceans Network Population Connectivity project, PC-06

description: Larval abundance (count m-3) was sampled at 11 sites on 7-8, and 11-12 Aug 2008 and at 16 sites on Aug 2-4, 2009 (Table 1), with a 200-μm plankton ring net (0.75-m diameter) towed for 5 min at each of 3 m and 12 m depth. These depths were designed to sample: 1) the surface mixed layer and 2) within the pycnocline, at or near the fluorescence maximum. The net was towed at ~1.7 m s-1 and the volume of filtered water was quantified using a General Oceanics flow meter. Using a net of this mesh size may under-estimate abundance of small larvae (&lt; 200 μm). However, it is a necessary compromise in this multi-species study to allow capture of a wide range of larval types at sufficient numbers (e.g. very abundant but small gastropods to larger but rare decapods). All plankton samples were preserved in 95% ethanol and larvae were identified and enumerated under a Nikon SMZ 1500, as described in Lloyd et al. (2012). Samples were split into subsamples using a Folsom plankton splitter. For n = 8, samples were split to 1/64 of the original volume and all subsamples were processed. Based on those samples, we determined that at least 20 individuals of each species were required to obtain an estimate of abundance that was within 5% of the true sample abundance. The remainder of the samples were split to between 1/128 and 1 to ensure that ≥20 individuals of the most abundant species (Margarites spp., Astyris lunata, Mytilus spp., Electra pilosa. and Cancer irroratus) were enumerated. In addition to these 5 species that met the above criteria, we used some less abundant species in some data analyses (see below); however, the validity of the results should not be affected because there was no bias in the estimated abundances and there is often spatial and/or temporal replication.
DOI: 10.5061/dryad.fh505/2
title: Vemco temperature-depth recorder data. A Canadian Healthy Oceans Network Population Connectivity project, PC-06

description: No CTD data are available for 2008 because of instrument failure. However, a Vemco Minilog Temperature-Depth Recorder (TDR) was attached to the net during plankton tows on 7-8 Aug 2008 providing some data, and TDR casts to 30 m depth were completed on 11-12 Aug 2008.
DOI: 10.5061/dryad.fh505/3
title: Temperature, Salinity, Density and relative fluorescence. A Canadian Healthy Oceans Network Population Connectivity project, PC-06

description: In 2009, temperature, conductivity, pressure and fluorescence were measured with a conductivity-temperature-density (CTD) profiler immediately before (A) and after (B) larval sampling at each station.
DOI: 10.5061/dryad.g7jq6/1
title: data_rajon_etal_2014
DOI: 10.5061/dryad.g90hd/5
title: Hatching

description: Numbers of offspring hatched / unhatched within any given clutch, measured in 2 hr time intervalsfrom 48 hours post fertilisation until 80 hours post fertilisation (or less, if all offspring had hatched prior to this point in time). File also contains information in MaleID, FemaleID, Treatment and experimental Block.
DOI: 10.5061/dryad.h61v0/2
title: FID

description: Flight initiation distances (measured in meters) per habitat (island I or mainland M) and population (location).
DOI: 10.5061/dryad.h61v0/3
title: PC1size

description: Body size (measured as the first Principal Component, PC1) per habitat (I island or M mainland), sex, and location (population). Higher values of PC1 reflect larger body sizes.
DOI: 10.5061/dryad.h61v0/4
title: Greenness

description: Greenness (measured as mean (Green-Red)/(Green+Red))) of the lizard dorsal area per habitat (I island and M mainland), sex (M male and F female) and location (population).
DOI: 10.5061/dryad.h61v0/5
title: SizeRawDataPCAScores

description: Raw size measurements (in millimeters for length characters and grams for weight) of the morphological characters the Principal Component Analysis (PCA) of size is based on, as well as the factor scores for PC1-9 per individual, per habitat (I: island, M: mainland), sex and population.
DOI: 10.5061/dryad.h61v0/6
title: ColorPCAscores

description: Factor scores for PC1-20 for dorsal coloration per individual, per habitat (I: island, M:mainland), Population/Location (e.g. the Pop column) and sex (M: male, F: female). The PCA is based on 2D-histograms of the pixels in RGB-space, see (Brydegaard, M., A. Runemark, and R. Bro. 2012. Chemometric Approach to Chromatic Spatial Variance. Case study: Patchiness of the Skyros Wall Lizard. J.Chemometr. 26: 246-255) for a description of how these are obtained from raw images. These are the PCs the correlations between populations as well as between populations and habitats are based on. A subset of the PCs are also included in the variance component analysis and for preparing figure 3.
DOI: 10.5061/dryad.h61v0/7
title: PopulationCorrelationColor

description: Pair-wise correlation between two populations (Population_1 and Population_2) per habitat category (M: two mainland populations, IM: one mainland and one islet population, I: two islet populations).
DOI: 10.5061/dryad.h61v0/8
title: PopulationHabitatCorrelationColor

description: Pair-wise correlations reflecting multivariate colour similarity between populations (e.g. lizard dorsal coloration)- and habitat squares (1 square meter areas photographed from above). Data is divided into Own-or-Not where 1 reflects that the lizards and the habitat are the same, whereas 0 reflects that lizards come from a different location than the habitat squares. Habitat category reflects if the pair are both from an islet population (I), both from a mainland population (M) or from one islet- and one mainland population (IM).
DOI: 10.5061/dryad.h61v0/9
title: FST

description: Pair-wise FST-values based on the 16 microsatellite markers: Lv 319, Pb10, B4, C9, Lv 472, Pod1B, B6, Pb73, Lv 4alfa, Pod 2, Po47, Po56, Po55, Po22, Po43 and Po51 used in Runemark, A., B. Hansson, P. Pafilis, E. Valakos, and E. Svensson. 2010. Island biology and morphological divergence of the Skyros wall lizard Podarcis gaigeae: a combined role for local selection and genetic drift on color morph frequency divergence? BMC Evol. Biol. 10:269. doi:  10.1186/1471-2148-10-269. and originally published in Runemark, A., Gabirot, M., Bensch, S., Svensson, E.I., Martín, J., Pafilis, P., Valakos, E.D. & Hansson, B. Cross-species testing of 27 pre-existing microsatellites in Podarcis gaigeae and P. hispanica (Squamata: Lacertidae) Mol. Ecol. Recourses 8(6):1367-1370. and Wellenreuther, M., Runemark, A., Svensson, E. & Hansson, B. 2009. Ten variable polymorphic microsatellite loci for the Skyros Wall Lizard Podarcis gaigeae (Squamata: Lacertidae).  Mol. Ecol. Recourses 9(3):1005-1008.
DOI: 10.5061/dryad.j774r/1
title: Dryad_HDY-13-OR0304R_Survival_Growth_Data
DOI: 10.5061/dryad.m6079/1
title: Liu_et_al_BLUEsData

description: Phenotypic data (BLUEs) underlying the QTL analysis
DOI: 10.5061/dryad.m6079/2
title: Liu_et_al_MarkerData

description: Genotypic data underlying the QTL sudy
DOI: 10.5061/dryad.m6079/3
title: Liu_et_al_Simulation

description: Simulation study
DOI: 10.5061/dryad.p63jh/1
title: Code for simulations of model 1

description: Matlab code for simulating model 1. Here, starting conditions are of invasion of NASL to a population of ASL at equilibrium (data included). Starting frequencies can be changed for any other starting conditions.
DOI: 10.5061/dryad.p63jh/2
title: Code for simulations of model 2

description: Matlab code for simulating model 2. Here, starting conditions are of invasion of NASL to a population of ASL at equilibrium (data included). Starting frequencies can be changed for any other starting conditions.
DOI: 10.5061/dryad.p63jh/3
title: Figure data

description: Matlab .mat files with the figure data
DOI: 10.5061/dryad.rm718/1
title: TableA1

description: Data set used to construct map of ploidy and cytotype in fig. 2.
DOI: 10.5061/dryad.s7v4b/5
title: state_matrix

description: State matrix (nsite x nyear) of observations. 0 = non visited site or missing data; 1 = species not detected (i.e., either dry or wet site); 2 = species detected (i.e., necessarily a wet site).
DOI: 10.5061/dryad.s7v4b/6
title: year_specific_covariates

description: Covariates year-specific ((n-1)year x n year-specific covariates). LRS = little rainy season, corresponds to the amount of water felt during the little rainy season (between march and april); RS = rainy season, corresponds to the amount of water felt during the rainy season (between march and the start of the corresponding visit).
DOI: 10.5061/dryad.sf804/1
title: 2008 Klingavälsån Sweden GMM data

description: This data file includes the relative warps (principal component axes) and linear measures used for the selection analyses in Kuchta and Svensson 2014 American Naturalist. There are separate variables as well for wing (front vs. hind) and fitness (live, or found dead at a feeding station).
DOI: 10.5061/dryad.tm33d/12
title: Pimg_sample_data

description: Tree by tree environmental data for Pinus mugo samples.
DOI: 10.5061/dryad.03s86/1
title: Alignments

description: Secondary alignments for all samples/loci in nexus format. Individual Locus and Sample information is available in Supplemental Tables.
DOI: 10.5061/dryad.0q7pc/12
title: SupplementaryFile2

description: Examined museum specimens and locality data from L. alticolor, L. chavin, L. incaicus, L. pachacutec, L. walkeri and L. wari.
DOI: 10.5061/dryad.13n29/1
title: Taxon level sample genetic data

description: Taxon level nuclear and chloroplast population genetic data for Chiloglottis aff. jeanesii and C. valida.
DOI: 10.5061/dryad.13n29/2
title: Kanangra-Boyd NP sample

description: Population genetic data for Kanangra-Boyd National Park population of Chiloglottis aff jeanesii and C. valida.
DOI: 10.5061/dryad.13n29/3
title: Simulated genotypes

description: Simulated pure and hybrid genotypes for Chiloglottis aff jeanesii and C. valida based on allele frequencies at Kanangra-Boyd National Park site.
DOI: 10.5061/dryad.13n29/4
title: Symbiotic germination trials

description: Germination data for hand crossed progeny in Chiloglottis aff jeanesii and C. valida.
DOI: 10.5061/dryad.13n29/5
title: Handcross embryo counts

description: Embryo count data for hand cross progeny of Chiloglottis aff jeanesii and C. valida.
DOI: 10.5061/dryad.13n29/6
title: Pollinator choice experiments

description: Data for synthetic pheromone and floral choice experiments in the pollinators for Chiloglottis aff jeanesii and C. valida.
DOI: 10.5061/dryad.13n29/7
title: NewHyb input file no prior

description: NewHybrids input file for Kanangra-Boyd sample of Chiloglottis aff jeanesii and C. valida. No priors were set.