cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2280gb60f
title: Data from: mapping endemic freshwater fish richness to identify high priority areas for conservation: an ecoregion approach

description: Freshwater ecosystems are experiencing accelerating global biodiversity
 loss. Thus, knowing where these unique ecosystems’ species richness
 reaches a peak can facilitate their conservation planning. By hosting more
 than 290 freshwater fishes, Iran is a major freshwater fish hotspot in the
 Middle East. Considering the accelerating rate of biodiversity loss, there
 is an urgent need to identify species rich areas and understanding of the
 mechanisms driving biodiversity distribution. In this study, we gathered
 distribution records of all endemic freshwater fishes of Iran (85 species)
 to develop their richness map and determine the most critical drivers of
 their richness patterns from an ecoregion approach. We performed a
 generalized linear model (GLM) with quasi-Poisson distribution to identify
 contemporary and historical determinants of endemic freshwater fish
 richness. We also quantified endemic fish similarity among the 15
 freshwater ecoregions of Iran. Results showed that endemic freshwater fish
 richness is highest in the Zagros Mountains while moderate level of
 richness was observed between Zagros and Alborz Mountains. High, moderate
 and low richness of endemic freshwater fish match with Upper Tigris
 & Euphrates, Namak, and Kavir & Lut Deserts ecoregions
 respectively. Kura - South Caspian Drainages and Caspian Highlands were
 the most similar ecoregions and Orumiyeh was the most unique ecoregion
 according to endemic fish presence. Precipitation and precipitation change
 velocity since the Last Glacial Maximum were the most important predictors
 of endemic freshwater fish richness. Areas identified to have the highest
 species richness have high priority for the conservation of freshwater
 fish in Iran, therefore, should be considered in future protected areas
 development.
description: # Mapping endemic freshwater fish richness to identify high priority areas
 for conservation: an ecoregion approach
 The dataset contains the
 current GPS coordinates of endemic freshwater fishes in Iran. ##
 Sharing/Access information All the data related to this study is available
 at the following link:
DOI: 10.6084/m9.figshare.31171552
title: Knowledge vs Skills: The Assessment Paradox in Hybrid Pediatric Surgery

description: The disparity in medical training resources poses a challenge for equitable education. This study evaluated a hybrid model—combining remote asynchronous theory with a centralized clinical rotation—to determine if it could bridge the competency gap for graduate-entry medical students training in resource-limited settings compared to high-school entry students in a tertiary center.
DOI: 10.6084/m9.figshare.31171552.v1
title: Knowledge vs Skills: The Assessment Paradox in Hybrid Pediatric Surgery

description: The disparity in medical training resources poses a challenge for equitable education. This study evaluated a hybrid model—combining remote asynchronous theory with a centralized clinical rotation—to determine if it could bridge the competency gap for graduate-entry medical students training in resource-limited settings compared to high-school entry students in a tertiary center.
DOI: 10.5061/dryad.4xgxd25h6
title: Data from: Molecular regulation of oil gland development and biosynthesis of essential oils in Citrus spp.

description: Secretory structures in terrestrial plants serve as reservoirs for a
 variety of secondary metabolites. Among these, the secretory
 cavity of the Rutaceae family is notable for containing
 essential oils with a wide range of applications. However, the
 molecular basis underlying secretory cavity development is
 unknown. Here, we revealed a molecular framework for Citrus oil gland
 formation. Using genetic mapping and genome editing, we demonstrated that
 this process requires LATE MERISTEM IDENTITY1 (LMI1), a key regulator of
 leaf serration. A conserved GCC box element of the LMI1
 promoter recruits DORNROSCHEN-like (DRNL) for transcriptional
 activation. This DRNL-LMI1 cascade triggers MYC5 activation,
 facilitating the development of oil glands and the biosynthesis of
 essential oils. Our findings spotlight cis-regulatory divergence
 within leaf shape genes, propelling novel functional
 tissue formation.
description: # Data from: Molecular regulation of oil gland development and
 biosynthesis of essential oils in *Citrus* spp. The dataset of the
 manuscript 'Molecular regulation of oil gland development and
 biosynthesis of essential oils in Citrus spp.' ad12953, including
 ATAC-seq, RNA-seq and whole genome re-sequencing data. ## Description of
 the data and file structure Three types of data, whole genome
 re-sequenceing data, RNA-seq and ATAC-seq, are stored in different
 folders. In the 01_Resequence folder, you'll find 'HuaPi'
 kumquat resequence and BSA-seq data, which utilize the reference genome
 Fortunella hindsii v2.0
 ([http://citrus.hzau.edu.cn/download.php](http://citrus.hzau.edu.cn/download.php)). In the 02_RNAseq folder, it contains three transcriptome data. The HP_RA_youngleaf_RNA-seq data uses Fortunella hindsii v2.0 as the reference genome, while the other RNA-seq data use Citrus sinensis v2.0 ([http://citrus.hzau.edu.cn/download.php](http://citrus.hzau.edu.cn/download.php)) as the reference genome. The 03_ATACseq folder holds the Thorn_ATACseq data, which is based on the Citrus sinensis v3.0 ([http://citrus.hzau.edu.cn/download.php](http://citrus.hzau.edu.cn/download.php)) reference genome for analysis. ## Sharing/Access information These NGS data (RNA-seq, whole genome sequencing and ATAC-seq) are also available at the National Genomics Data Center (NGDC, [https://ngdc.cncb.ac.cn](https://ngdc.cncb.ac.cn)) under Bioproject numbers: PRJCA020044, PRJCA019979, and PRJCA019977.
DOI: 10.5061/dryad.12jm63z4r
title: Data from: Morphological disparity and evolutionary patterns of Cambrian hyoliths

description: Hyolitha represents one of the major components of the Cambrian
 evolutionary fauna, first appearing in the Terreneuvian and rapidly
 diversifying soon after. Recent work has both enriched the hyolith fossil
 records and expanded our understanding of their biology, but studies
 documenting the evolutionary trajectory of Cambrian hyoliths remain
 scarce. Here we present the first study of changes in morphological
 disparity in Cambrian hyoliths over time with the aim of characterizing
 the evolutionary trajectory of hyoliths through their primary period of
 diversification. Our results show that hyoliths occupy distinct regions of
 morphospace at different times during the Cambrian, with an expansion in
 morphospace occupation associated with the increase in hyolith diversity
 in the early Cambrian. Both the Sinsk Event and multiple abiotic factors
 led to a decline in hyolith diversity in the Miaolingian, and
 morphological disparity also contracts in association with this reduction
 in diversity.
description: # Data from: Morphological disparity and evolutionary patterns of Cambrian
 hyoliths
 [https://doi.org/10.5061/dryad.12jm63z4r](https://doi.org/10.5061/dryad.12jm63z4r) ## Description of the data and file structure hyolithsmorphospace.csv.-The data contains the character state matrix of Cambrian hyolith taxa, which is used for analyses of Cambrian hyoliths disparity in R version 4.2.3 ## Code/Software analyses-(hyolithsmorphospace).R- the code for R version 4.2.3 to analyse the Cambrian hyoliths disparity. NMDS data in PAST.dat - the file for NMDS analysis in PAST 4.12b
DOI: 10.5061/dryad.05qfttf9c
title: SSRs data from 12 populations in China and North America

description: The project is the SSRs data of 12 populations in China and North America.
 The Chinese populations include Panjin (PJ), Tianjin (TJ), Tangshan (TS),
 Lianyungang (LYG), Yancheng (YC), Zhoushan (ZS), Putian (PT), Zhangzhou
 (ZZ), and Zhanjiang (ZJ) and the North American populations include
 Commonwealth of Virginia (VI), Lange Eylandt (LE), and Rhode Island (RL).
 The markers involved in this data are 7, including RUMM017, RUMM018,
 RUMM020, RUMM021, RUMM032, RUMM034, and RUMM047.
description: SSR's primer selection SSR site primers RUMM017, RUMM018,
 RUMM020, RUMM021, RUMM032, RUMM034, and RUMM047 were created by Wang et
 al.[45], and all forward primers had a cac sequence tag (5'-
 cacgacgttgtaaaacgac -3') and 6-carboxyfluorescein (FAM) added to the
 5' end. The PCR products were then delivered to Tsingke Biotechnology
 Co., Ltd., and electrophoresis was performed using a 3730xl DNA analyzer.
 Based on the known traits (size range, repeating motifs) of a single
 microsatellite region, the microsatellites included in the assemblage are
 chosen. Reaction system: 25 ml of 2X Accurate Taq Master Mix, 15 ml of
 template DNA and RNase-free water, 1 ml of forward primer, and 1 ml of
 reverse primer. Reaction conditions: predenaturation at 95 °C for 15 min;
 denaturation at 94 °C for 30 s; annealing for 1 min 30 s; extension at 72
 °C for 1 min 30 s (a total of 35 cycles); and extension at 72 °C for 10
 min.
description: # SSRs data from 12 populations in China and North America
 This data includes SSRs
 data from a total of 12 populations in China and North America where 7 SSR
 markers were used.
DOI: 10.5061/dryad.xd2547dqb
title: Data from: Rope making in the Aurignacian of Central Europe more than 35,000 years ago

description: Evidence for the manufacture and use of fiber technology such as rope and
 twine is rare in the Paleolithic, despite the widely held view that such
 artifacts were in regular use during the Pleistocene. Based on the
 discovery of a more than 35,000 year-old perforated baton made from
 mammoth ivory at Hohle Fels Cave in Ach Valley of southwestern Germany
 together with experimental studies, we are now able to demonstrate one way
 people of the early Upper Paleolithic manufactured rope. This work
 contributes to our understanding of the evolution of technology,
 cooperative work and Paleolithic social organization.
description: 3D scan of perforated baton from the Aurignacian found at the
 site of Hohle Fels.
description: # Rope making in the Aurignacian of Central Europe more than 35,000 years
 ago ## Description of the
 data and file structure Two versions of a 3D scan of the perforated baton
 of Hohle Fels: .ply and .stl
DOI: 10.15468/dl.h4b8u6
title: Occurrence Download

description: A dataset listing the 1852 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.12775 43.31955,2.21658 43.31955,2.21658 43.3892,2.12775 43.3892,2.12775 43.31955))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 1852 records were derived from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003832-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnfsuc
title: Occurrence Download

description: A dataset containing 6561 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Giraffa camelopardalis"
 ]
}

 The dataset includes 6561 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003849-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvtr4e
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Gomphomacromia"
 ]
}

 The dataset includes 296 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003850-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.cvdncjt9k
title: Data from: Joining up the scattered anticancer knowledge on auraptene and umbelliprenin: A meta-analysis

description: Auraptene (AUR) and umbelliprenin (UMB) are naturally occurring prenylated
 coumarins that have demonstrated promising anticancer effects across
 various human cancer cell lines. This meta-analysis aimed to
 systematically assess, compare, and quantify the anticancer efficacy of
 AUR and UMB by synthesizing evidence from in vitro studies. A
 comprehensive literature search identified 27 eligible studies
 investigating AUR or UMB against cancer cells. Mixed-effects models
 revealed significant negative associations between coumarin dose and
 viability for AUR (est. = − 2.27) and UMB (est. = − 3.990), underscoring
 their dose-dependent cytotoxicity. Meta-regression indicated slightly
 higher potency for UMB over AUR, potentially due to increased
 lipophilicity imparted by additional isoprenyl units. Machine learning
 approaches identified coumarin dose and cancer type as the most
 influential determinants of toxicity, while treatment duration and the
 specific coumarin displayed weaker effects. Moderate (AUR) to substantial
 (UMB) between-study heterogeneity was detected, although the findings
 proved robust. In summary, this meta-analysis establishes AUR and UMB as
 promising natural anticancer candidates with clear dose-toxicity
 relationships across diverse malignancies. The structural insights and
 quantifications of anticancer efficacy can inform forthcoming efforts
 assessing therapeutic potential in pre-clinical models and human trials.
description: &gt; Introduced by Shakiba et al. in [Joining up the scattered anticancer
 knowledge on auraptene and umbelliprenin: a
 meta-analysis](https://www.nature.com/articles/s41598-024-62747-z) ## Data
 Contents The dataset is provided as three CSV files: one for AUR, one for
 UMB, and one combined with the following columns: * `author`: First
 author's last name from publication * `year`: Publication year *
 `cancerType`: Cancer type examined * `cellLine`: Specific cell line
 utilized * `time`: Treatment duration (in hours) * `coumarin`: Coumarin
 used (AUR or UMB) * `coumarinDose`: Dosage of coumarin (in μM) *
 `viability`: Mean viability (%) in treatment group * `viabilitySD`:
 Standard deviation of treatment group viability * `viabilityN`: Number of
 repeats in treatment group * `control`: Mean viability (%) in control
 group * `controlSD`: Standard deviation of control group viability *
 `controlN`: Number of repeats in control group The codes utilized in the
 paper are available
 at: [https://github.com/moneuron/srep-meta-codes](https://github.com/moneuron/srep-meta-codes)
DOI: 10.5061/dryad.fqz612k0b
title: Data from: Systematics of Oxalis subg. Thamnoxys (Endl.) Reiche sect. Holophyllum Progel (Oxalidales, Oxalidaceae)

description: Oxalis sect. Holophyllum (Oxalidaceae) is a small group of species that
 are endemic to the Brazilian Atlantic Forest in the states of Rio de
 Janeiro, Minas Gerais, Espírito Santo, and Bahia. Species of the section
 can be recognized by the unifoliolate leaves, one-seeded carpels, and the
 common presence of dorsiventrally flattened (and sometimes winged)
 peduncles and/or petioles. Circumscriptions of the currently accepted
 species needed to be revaluated, as the overlap in several features have
 blurred limits among morphologically similar taxa. In this study we
 evaluate the monophyly and phylogenetic relationships among species of O.
 sect. Holophyllum, and provide an updated taxonomic study of the section,
 aiming at improving species circumscriptions and facilitating
 species-level identification. For this task, we analyzed samples from
 herbaria and carried out fieldwork to observe the plants in loco, collect
 samples, and gather material for DNA extraction, amplification, and
 sequencing. Bayesian and Maximum Likelihood phylogenetic analyses were
 performed using sequences from three markers: nrITS, and plastid
 trnL-trnF, and petA-psbJ from 13 of the 17 currently accepted species,
 which corroborate the monophyly of the section. Among the species of O.
 sect. Holophyllum, ten are newly described here at species level: O.
 adpressipila Fiaschi & Bilk (based on O. kuhlmannii Lourteig var.
 adpressipila Lourteig), O. capixaba Fiaschi & Bilk, O. cornicarpa
 Fiaschi, O. inopinata Fiaschi & Bilk, O. itamarajuensis Fiaschi
 & Bilk (based on O. alata Mart. ex Zucc. var. hirta Lourteig), O.
 leonii Fiaschi & Bilk, O. occulta Fiaschi & Bilk, O.
 retrorsa Fiaschi & Bilk, O. sciophila Fiaschi & Bilk, and
 O. septentrionalis Fiaschi & Bilk. Lectotypes are chosen for nine
 names, and an epitype for O. impatiens Vell. An identification key to all
 species is provided, as well as descriptions, illustrations, geographic
 distribution maps, and preliminary conservation statuses following IUCN
 guidelines.
description: Data from: Systematics of Oxalis subg. Thamoxys (Endl.) Reiche sect.
 Holophyllum Progel (Oxalidales, Oxalidaceae); Fiaschi et al. (2024)
 Data are organized by:
 Alignment in fasta format: alignment matrix with concatenated data from
 ITS, petA-psbJ and trnL-trnF used to infer phylogenetic relationships of
 Oxalis. Trees in newick format: Phylogenetic trees from Maximum Likelihood
 and Bayesian analysis based on the concatenated matrix.
DOI: 10.15468/dl.f9xd4t
title: Occurrence Download

description: A dataset containing 799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lathyrus sativus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 799 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003851-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9cwaua
title: Occurrence Download

description: A dataset containing 1898 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Azanus ubaldus"
 ]
}

 The dataset includes 1898 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003852-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.tqjq2bw5q
title: Data from : In vivo mechanical characterisation of an arterial wall using an inverse analysis procedure: application on an animal model of intracranial aneurysm

description: Intracranial aneurysm is a pathology related to the deterioration of the
 arterial wall. This work is an essential part of a large-scale project
 aimed at providing clinicians with a non-invasive patient-specific
 decision support tool to facilitate the rupture risk assessment. It will
 be based on the link between the aneurysm shape clinically observed and a
 database derived from the in vivo mechanical characterisation of
 aneurysms. To supply this database, a deformation device prototype of the
 arterial wall was developed. Its use coupled with medical imaging
 (Spectral Photon Counting Computed Tomography providing a spatial
 resolution down to 250 um) is used to determine the in vivo mechanical
 properties of the wall based on the inverse analysis of the quantification
 of the wall deformation observed experimentally. This study presents the
 in vivo application of this original procedure on an animal model of
 aneurysm. The mechanical properties of the aneurysm wall identified were
 congruent with the literature and the errors between the numerical and
 experimental results were less than 10 %. Based on these parameters, this
 study allows the assessment of the aneurysm stress state for a known
 solicitation and points towards the definition of a rupture
 criterion. 
description: # Data from: *In vivo* mechanical characterisation of an arterial wall
 using an inverse analysis procedure: application on an animal model of
 intracranial aneurysm
 [https://doi.org/10.5061/dryad.tqjq2bw5q](https://doi.org/10.5061/dryad.tqjq2bw5q) The dataset contains the results associated with the inverse analysis leading to the *in vivo* mechanical characterisation of the aneurysm wall. ## Description of the data and file structure The data include the .txt files resulting from the numerical modelling and the Matlab code of the multiple linear regression. All the datasets are presented for 1 study subject.
DOI: 10.5061/dryad.x0k6djhs4
title: On modelling airborne infection risk

description: Airborne infection risk analysis is usually performed for enclosed spaces
 where susceptible indi- viduals are exposed to infectious airborne
 respiratory droplets by inhalation. It is usually based on exponential,
 dose-response models of which a widely used variant is the Wells-Riley
 (WR) model. We revisit this infection-risk estimate and extend it to the
 population level. We use an epidemiolog- ical model where the mode of
 pathogen transmission, airborne or contact, is explicitly considered. We
 illustrate the link between epidemiological models and the WR and the
 Gammaitoni and Nucci models. We argue that airborne infection quanta are,
 up to an overall density, airborne infectious respiratory droplets
 modified by a parameter that depends on biological properties of the
 pathogen, physical properties of the droplet, and behavioural parameters
 of the individual. We calculate the time-dependent risk to be infected for
 two scenarios. We show how the epidemic infection risk de- pends on the
 viral latent period and the event time, the time infection occurs.
 Infection risk follows the dynamics of the infected population. As the
 latency period decreases, infection risk increases. The longer a
 susceptible is present in the epidemic, the higher its risk of infection
 for equal exposure time to the mode of transmission is.
description: The study has no original data. The numerical results of this
 study are available within this paper. The code that produced the results
 is available here. The parameter values and their justification are in the
 Electronic Supplementary Material of this paper.
description: # On modelling airborne infection risk
 [https://doi.org/10.5061/dryad.x0k6djhs4](https://doi.org/10.5061/dryad.x0k6djhs4) No original data were used. We generated data via numerical simulations of four epidemic scenarios to calculate the epidemic risk. As described in the manuscript, these were specified by low (0.1 days)/high (6.0) pathogen latent periods and low (1.0 day)/high(7.0)  risk times. ## Description of the data and file structure The epidemic-risk data were generated via the MATLAB code SEIR_DC_Simulations_Final.m which uses the ODE solver dropletODEs. The code contains all the necessary input data, which are described in detail in the Electronic Supplementary Material. The output simulation data generated by SEIR_DC_Simulations_Final.m are stored in the MAT-files Epi*Low(High)Low(High)*Days.mat where the first Low/High refers to the pathogen latent period and the second Low/High to the risk period. Each MAT-file corresponds to a scenario simulation for which the user must specify the latent period of the pathogen and the risk time  The code SEIR_DC_Risk_Plot_Final.m reads the MAT-files and produces the figures in the manuscript.  ## Sharing/Access information No original data were used. We produced numerical results based on parameters from the literature and we developed a MATLAB code for this purpose. ## Code/Software See "Description of the data and file structure". We used the MATLAB version R2022b Update 7, 64-bit (maci64).
DOI: 10.15468/dl.wtme29
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Latrobea diosmifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 146 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003854-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.