cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7281/t1154f09
title: Data associated with: Size dependent thermodynamics and kinetics in electric field mediated colloidal crystal assembly.

description: From the study abstract We compare measurements and models of the system size dependent assembly of quasi-two dimensional (2D) colloidal crystals within interfacial quadrupole electrodes. Perturbation theory (PT) and Monte Carlo (MC) simulations are used to make thermodynamic predictions of the voltages required to obtain all particles within a crystalline phase for different system sizes. These results show good agreement with video microscopy (VM) measurements of colloidal crystals contain ing 75–300 particles. Colloidal assembly kinetic trajectories for the same system sizes are quantified from VM experiments using order parameters (reaction coordinates) to capture real-space local and global hexagonal ordering. These trajectories are fit with a Smoluchowski model to extract configuration dependent free energy and diffusivity landscapes (FEL, DL) that capture the microscopic details of assembly dynamics. Landscape features, such as the number and heights of barriers and local gradients, capture the formation, diffusion, and migration of grain boundaries in polycrystalline states, which are increasingly prevalent for n &gt; 200 but vanish for n &lt; 150. These results demonstrate the importance of system size effects in the formation and annealing of polycrystalline states in colloidal crystallization processes. The data in this study are organized in zip files, with each zip file representing a key step in the research process. NOTE: Fortran 90 code used for MC simulations and to extract FEL and DL are available by request to Dr. Michael Bevan.
DOI: 10.7281/t1wd3xhm
title: Data associated with: Smooth-Muscle-Like cells derived from human embryonic stem cells support and augment cord-like structures in vitro

description: From the publication abstract: Engineering vascularized tissue is crucial for its successful implantation, survival, and integration with the host tissue. Vascular smooth muscle cells (v-SMCs) provide physical support to the vasculature and aid in maintaining endothelial viability. In this study, we show an efficient derivation of v-SMCs from human embryonic stem cells (hESCs), and demonstrate their functionality and ability to support the vasculature in vitro. Human ESCs were differentiated in monolayers and supplemented with platelet-derived growth factor-BB (PDGF-BB) and transforming growth factor-beta 1 (TGF-β1). Human ESC-derived smooth-muscle-like cells (SMLCs) were found to highly express specific smooth muscle cell (SMC) markers—including α-smooth muscle actin, calponin, SM22, and smooth muscle myosin heavy chain—to produce and secrete fibronectin and collagen, and to contract in response to carbachol. In vitro tubulogenesis assays revealed that these hESC-derived SMLCs interacted with human endothelial progenitor cell (EPCs) to form longer and thicker cord-like structures in vitro. We have demonstrated a simple protocol for the efficient derivation of highly purified SMLCs from hESCs. These in vitro functional SMLCs interacted with EPCs to support and augment capillary-like structures (CLSs), demonstrating the potential of hESCs as a cell source for therapeutic vascular tissue engineering.
DOI: 10.7281/t1wf3nz7
title: Data and code associated with the publication: Echolocating bats adjust sonar call features and head/ear position as they track moving targets in the presence of clutter

description: This dataset is the data that was used to create the manuscript, “Echolocating bats adjust sonar call features and head/ear position as they track moving targets in the presence of clutter”, which brings novel findings to the field of bat research https://doi.org/10.1121/10.0036252. Dataset contains the necessary files and code scripts to recreate the data driven figures in the manuscript using Matlab standard formats (.m and .mat). Code scripts are titled Fig#_code.m and are associated with the respective figure number they recreate. There is one additional script included that is needed to run one of the figure-based scripts. Data is contained in the AudioData and VideoData folders. These data are pre-processed data from the raw audio data files and video data files that were collected during experimental trials.
DOI: 10.34976/4swk-g935
title: PMA Kenya Phase 1 Household and Female Survey (2019)

description: PMA Kenya Phase 1 (KEP1) Household and Female (HQFQ) Survey includes 308 enumeration areas (EAs) of selected counties. The national sample is composed of the existing 115 PMA2020 EAs which were refreshed and supplemented with the new EAs. The new EAs were drawn using the same stratified cluster design with urban-rural strata by the Kenya Bureau of Statistics following the pre-existing sampling frame used for PMA2020. The results are national and county-level representative. The final sample included 10,378 households and 9,477 females (98.7%) and which completed the interview. Data collection was conducted between November and December 2019. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/cjvx-z226
DOI: 10.34976/7e1p-7459
title: PMA2020 Uganda Round 3 Household Female Survey (2015)

description: Uganda Round 3 Household and Female (HQFQ) survey used a two-stage cluster design with urban-rural and region as strata. A sample of 110 enumeration areas (EAs) was drawn by the Uganda Bureau of Statistics from its master sampling frame. In each EA households and health facilities were listed and mapped, with 44 households randomly selected. Households were surveyed and occupants enumerated. All eligible females age 15 to 49 were contacted and consented for interviews. The final analytic sample included 4,412 completed household and 3,690 completed de facto female interviews. Data collection was conducted between August to September 2015. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/b88s-zx32
DOI: 10.34976/dfq8-ay63
title: PMA2020 Ghana Round 2 Service Delivery Point Survey (2014)

description: Ghana Round 2 Service Delivery Point (SQ) survey used a two-stage cluster design with urban and rural, major ecological zones as the strata. A sample of 100 enumeration areas (EAs) was drawn by the Ghana Statistical Service from its master sampling frame. Each EA was listed and mapped. Public facilities were included if a selected EA fell within the catchment area. Private facilities were included if they fell within the boundaries of the EA. Data collection was conducted between February through June, 2014. The final completed sample in Ghana Round 2 was 124 SDPs. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/vfbp-bz42
DOI: 10.34976/e3dm-4c80
title: PMA2020 Burkina Faso Round 6 Household Female Survey (2019)

description: Burkina Faso Round 6 Household and Female (HQFQ) survey used a two-stage cluster design with urban-rural strata. A sample of 83 enumeration areas (EAs) was drawn from the l’Institut National de la Statistique et de la Démographie (INSD) master sampling frame. In each EA, 35 households were selected. Households were systematically selected using the Random Number Generator application. Occupants in selected households were enumerated, and eligible women (women of reproductive age, 15-49) were contacted and consented for interviews. Data collection was conducted between December 2018 and January 2019. The final sample included a total of 2,763 households and 3,388 females. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/b88s-zx32
DOI: 10.34976/f934-z541
title: PMA Côte d’Ivoire Phase 3 Household and Female Survey (2022)

description: PMA Côte d’Ivoire Phase 3 Household and Female survey collects information on knowledge, practices and coverage of family planning services in 122 enumeration areas using a multi-stage stratified cluster design with urban-rural strata. The results are representative at the national level and within urban/rural strata. Data were collected between September and December 2022 from 3,774 households (96.0% response rate), 3,873 women aged 15 to 49 (95.3% response rate) and 216 health service sites. The PMA Côte d’Ivoire Phase 2 panel survey was conducted in 31 counties among 4,747 women from Phase 1 and/or Phase 2 who consented to follow-up and aged 15-49 at Phase 3 survey (September to December 2022). 76.6% of women were enrolled in the panel survey at Phase 1 between September and November 2020, and 23.4% of women were enrolled at Phase 2 between September and December 2021. Of the 4,747 eligible respondents, 25.8% were not reached for follow-up. Of those reached, 3,420 (72.0% of the eligible female respondents) completed the Phase 3 survey, for a response rate of 97.1% among contacted women. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/cjvx-z226
DOI: 10.34976/fzsa-h638
title: PMA Burkina Faso Phase 3 Service Delivery Point Survey (2022)

description: PMA Burkina Faso Phase 3 Service Delivery Point Survey includes services in 167 enumeration areas (EAs) selected using a multi-stage stratified cluster design with urban-rural strata. The results are representative at the national level and in the urban/rural areas. Results from Centre region are representative of the urban environment only and results from the Hauts-Bassin region are representative of the region and the urban/rural areas. The final sample included 239 SDPs which completed the interview. Data collection was conducted between December 2021 and March 2022. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/f0vf-qd73
DOI: 10.34976/m5m3-cw68
title: PMA Burkina Faso Phase 2 Client Exit Interview Follow-up Survey (2021)

description: PMA Burkina Faso Phase 2 Client Exit Interview Follow-up Survey includes 167 enumeration areas (EAs) selected using a multi-stage stratified cluster design with urban-rural strata. The results are representative at the national level and in the urban/rural areas. Results from Centre region are representative of the urban environment only and results from the Hauts-Bassin region are representative of the region and the urban/rural areas. The final sample included 656 clients who completed the interview. The data was collected between June 2021. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/1hrp-p268
DOI: 10.34976/nxsw-cn54
title: PMA Niger Phase 1 Client Exit Interview Baseline Survey (2021)

description: PMA Niger Phase 1 (NEP1) Client Exit Interview Baseline Survey includes 103 enumeration areas (EAs) selected using a multi-stage stratified cluster design with urban-rural strata. The results representative at the national and regional level. The final sample included 684 clients which completed the interview. Data collection was conducted between December 2020 and April 2021. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/1hrp-p268
DOI: 10.34976/vb1q-sc65
title: PMA2020 Burkina Faso Round 1 Service Delivery Point Survey (2015)

description: Burkina Faso Round 1 Service Delivery Point (SQ) survey used a two-stage cluster design with urban and rural strata. A sample of 53 enumeration areas (EAs) was drawn by INSD. Each EA was listed and mapped. Public facilities were included if a selected EA fell within the catchment area. Private facilities were included if they fell within the boundaries of the EA. Data collection was conducted between November 2014 and January 2015. The final completed sample was 106 SDPs. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/vfbp-bz42
DOI: 10.34976/w20f-tr82
title: PMA2020 Democratic Republic of Congo (Kinshasa) Round 3 Household Female Survey (2015)

description: Democratic Republic of Congo (Kinshasa) Round 3 Household and Female (HQFQ) survey included a sample of 58 enumeration areas (EA) was drawn (PPS) in Kinshasa. For each EA, 30 households and 3-6 health service delivery points (SDPs) were selected. Households were systematically sampled using random selection and a complete household roster was conducted. Eligible females of reproductive age (15-49) were contacted and consented for interviews. The final sample included 1,768 completed households, and 2,684 completed de facto females. Data collection was conducted between May and June, 2015. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/b88s-zx32
DOI: 10.34976/wf58-4e96
title: PMA Uganda Phase 2 Household and Female Survey (2021)

description: PMA Uganda Phase 2 Household and Female survey collects data on knowledge, practice, and coverage of family planning services in 141 enumeration areas (EAs) selected using a multi-stage stratified cluster design with urban-rural strata. Of the 141 enumeration areas, 19 new enumeration areas were added for a CIFF (Children’s Investment Fund Foundation) sponsored study that are now part of the PMA Uganda cross-sectional sample. The results are representative at the national level and in the urban/rural areas. The results are representative at the national level and within urban/rural strata. The final sample included 4,399 (96.0%) households and 4,346 (96.0%) women who completed the interviews for the cross-sectional survey. The data was collected between September and November 2021.Phase 2 panel data collection was conducted among females aged 15-49 at the time of the Phase 2 survey who were interviewed at the baseline survey between September and October 2020 and consented to follow-up. Of the 3,843 eligible respondents, 20% were not reached for follow-up. Of those reached, 3,042 (98.5%) completed the survey, for a response rate of 97.3% among contacted women. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/cjvx-z226
DOI: 10.34976/xm89-2j95
title: PMA2020 Burkina Faso Round 6 Service Delivery Point Survey (2019)

description: Burkina Faso Round 6 Service Delivery Point (SQ) survey used a two-stage cluster design with urban-rural strata. A sample of 83 enumeration areas (EAs) was drawn from the l’Institut National de la Statistique et de la Démographie (INSD) master sampling frame. In each EA, 35 households and up to three private service delivery points (SDPs) were selected. Up to three public SDPs serving that EA were also selected. Data collection was conducted between December 2018 and January 2019. The final sample included a total of 96 SDPs. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/vfbp-bz42
DOI: 10.34976/y5dt-t778
title: PMA2020 Burkina Faso Round 4 Service Delivery Point Survey (2017)

description: Burkina Faso Round 4 Service Delivery Point (SQ) survey used a two-stage cluster design with urban and rural strata. A sample of 83 enumeration areas (EAs) was drawn by the INSD master sampling frame. Each EA was listed and mapped. Public facilities were included if a selected EA fell within the catchment area. Private facilities were included if they fell within the boundaries of the EA. Data collection was conducted between November, 2016 and January, 2017. The final completed sample was 129 SDPs. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/vfbp-bz42
DOI: 10.34976/zjkq-zq35
title: PMA Democratic Republic of Congo (Kinshasa, Kongo Central) Phase 2 Household and Female Survey (2021)

description: PMA Democratic Republic of Congo (Kinshasa Kongo Central) Phase 2 Household and Female survey collects state-level representative data on knowledge, practice, and coverage of family planning services in 57 enumeration areas (EAs) in Kinshasa and 57 EAs in Kongo Central selected using a multi-stage stratified cluster design with urban-rural strata. The final sample included 1,866 (90.1%) households and 2,369 (93.0%) de facto females in Kinshasa and 1,891 (93.3%) households and 1,929 (98.3%) de facto females in Kongo Central who completed the interviews for the cross-sectional survey. The data was collected between November 2020 and February 2021.Phase 2 panel data collection was conducted among females aged 15-49 at the time of the Phase 2 survey who were interviewed at the baseline survey between December 2019 and February 2020 and consented to follow-up. In Kinshasa, of the 2549 eligible respondents, 17.8% were not reached for follow-up. Of those reached, 2006 (78.7%) completed the survey, for a response rate of 95.8% among contacted women. In Kongo Central, of the 1902 eligible respondents, 18.1% were not reached for follow-up. Of those reached, 1534 (80.7%) completed the survey, for a response rate of 98.5% among contacted women. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/cjvx-z226
DOI: 10.34976/zqmw-f503
title: PMA2020 Ghana Round 3 Service Delivery Point Survey (2014)

description: Ghana Round 3 Service Delivery Point (SQ) survey used a two-stage cluster design with urban and rural, major ecological zones as the strata. A sample of 100 enumeration areas (EAs) was drawn by the Ghana Statistical Service from its master sampling frame. Each EA was listed and mapped. Public facilities were included if a selected EA fell within the catchment area. Private facilities were included if they fell within the boundaries of the EA. Data collection was conducted between October and December, 2014. The final completed sample in Ghana Round 3 was 231 SDPs. More information about this dataset can be found in the corresponding codebook, accessible at https://doi.org/10.34976/vfbp-bz42
DOI: 10.7281/t1/avev7m
title: Data associated with the publication: Small RNAs and Hfq capture unfolded RNA target sites during transcription

description: Small ribonucleoproteins (sRNPs) guide RNA folding, modification, splicing, and processing during transcription. The data associated with this manuscript examine how bacterial Hfq•DsrA sRNA complexes bind to actively elongating rpoS mRNA using single-molecule co-localization co-transcriptional assembly (smCoCoA). The results show that recruitment of Hfq upstream enabled dynamic sampling of rpoS transcripts for segments complementary to DsrA sRNA. Site-specific fluorophores on the DNA template reveal that Hfq•DsrA can target rpoS mRNA soon after the DsrA binding site is transcribed. The results suggest that sRNPs are able to capture a prospective target site before it is masked by folding of the nascent transcript, providing a kinetic advantage to co-transcripitonal targeting over post-transcriptional targeting. This dataset comprises metadata, EMCCD movies of smCoCoA experiments, and analyzed data used to create the figures in this manuscript.
DOI: 10.7281/t1/h1zpli
title: Data associated with the publication: 2019–2020 H1N1 clade A5a.1 viruses have better in vitro fitness compared with the co circulating A5a.2 clade

description: This dataset includes the raw data and analyses of glycan array binding assays, plaque assays, infectious virus growth curves, and serum neutralization assays from the above publication. These are in the format of Excel sheets, GraphPad Prism files, and for plaque assays pictures of the plaque wells. The data are organized according to the assays performed.
DOI: 10.7281/t1/jdhwjn
title: Data associated with the publication: Optimized periphery-core interface increases fitness of the Bacillus subtilis glmS ribozyme

description: This dataset is related to a manuscript to be submitted to Nucleic Acids Research, describing high-throughput mutational screen and molecular dynamics simulation of a ribozyme. Like other functional RNAs, ribozymes encode a conserved catalytic center supported by peripheral domains that vary among ribozyme sub-families. To understand how core-periphery interactions contribute to ribozyme fitness, we compared the cleavage kinetics of all single base substitutions at 152 sites across the Bacillus subtilis glmS ribozyme by high-throughput sequencing (ClvSeq). The in vitro activity map mirrored phylogenetic sequence conservation in glmS ribozymes, indicating that biological fitness reports all biochemically important positions. The results showed that most deleterious mutations lower activity by impairing ribozyme self-assembly. All-atom molecular dynamics simulations of the complete ribozyme revealed how individual mutations in the core or the IL4 peripheral loop rewire the network of hydrogen bonds around the catalytic site. Peripheral IL4 mutations introduce a non-native tertiary interface that corrupts folding of the wild type core, eliminating activity. The results illustrate how competition between native and non-native structures in RNA drives the natural selection of central and peripheral tertiary interaction motifs.
DOI: 10.7281/t1/lr1fmh
title: Data associated with the publication: Geographic regions enriched with frail older adults

description: Frail individuals are at particular risk in public health emergencies. Information about the concentration of frail individuals is expected to be valuable to health departments and other organizations with resources to deploy such as shelter, hospital beds, and ventilators. Additionally, researchers benefit from granular measures of frailty in communities for health services research or community-based research. We aimed to generate the probability of frailty for 100% of U.S. Medicare beneficiaries in the U.S. using a claims-based frailty index and describe the regional prevalence of frailty. We used a cross-sectional design using data from April through October 2015. We included 100% of Medicare beneficiaries with parts A and B coverage (n= 31,609,883) and calculated the probability of frailty using a validated claims-based frailty index. We report the prevalence of frail adults within each census division, state, county and U.S. zip code as the proportion of Medicare beneficiaries with a frailty probability greater than 20%. This dataset is our estimate of the percent of frail individuals (in 2015) for each zip code and county in the U.S. We anticipate this data set is useful for health services researchers and for individuals planning services. The estimates at the level of the census division and state are available in the published manuscript.
DOI: 10.7281/t1/otisgl
title: Data associated with: Modeling pollinator behavior through survival analysis.

description: Timeseries data recording the length of time between pollinator arrival intervals. The IDs of the pollinators and the weather data during the time-interval are recorded. The data is formatted to fit a Poisson distribution and used in time-to-event analysis.