cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29085020.v1
title: KBControl_KB693_KB6336_gTMT.txt

description: This study aimed to analyze the <i>γ-TMT</i> (<i>γ-tocopherol methyltransferase</i>) gene sequence and to perform <i>in silico</i> characterization of <i>γ-TMT</i> protein associated with tocopherol biosynthesis in mutant rodent tuber plants. Degenerate primers were designed based on the homologous <i>γ-TMT</i> gene sequences from several monocot species. Amplification of the <i>γ-TMT</i> gene produced a ±1300 bp DNA band in the mutant plants, while only a ±100 bp band was detected in the wild-type. The amplified region partially covers the <i>γ-TMT</i> gene, which has undergone mutations due to a combination of somaclonal variation and gamma irradiation. Thirteen base substitutions and four base deletions were identified between wild-type and mutant sequences. Comparisons between the mutants revealed five base substitutions and three base deletions. Translation analysis showed that KB 3-3-6 mutant produced a 406-amino acid protein, while KB 6-9-3 mutant produced a 407-amino acid protein. In contrast, the wild-type only translated into a 19-amino acid fragment. The identified exon region consisted of 354 and 355 amino acids in KB 3-3-6 and KB 6-9-3 mutants, respectively, while the amplified wild-type region was entirely exonic. Predicted protein structures based on the CDS sequences revealed notable differences in helix and loop orientation, particularly in the C-terminal domain and central regions of the protein. The protein structure of KB 6-9-3 mutant was more stable, with an RMSD value of 0.424 Å compared to 1.359 Å in KB 3-3-6 mutant. These structural differences are potentially linked to higher tocopherol content and enhanced anticancer activity in the mutant plants. This study provides foundational insights into the expression of the <i>γ-TMT</i> gene with tocopherol biosynthesis and supports the development of specific molecular markers in <i>Typhonium flagelliforme</i>.
DOI: 10.6084/m9.figshare.21777161.v2
title: A species-level trait dataset of bats in Europe and beyond

description: Knowledge of species’ functional traits is essential for understanding biodiversity patterns, predicting the impacts of global environmental changes, and assessing the efficiency of conservation measures. Bats are major components of mammalian diversity and occupy a variety of ecological niches and geographic distributions. However, an extensive compilation of their functional traits and ecological attributes is still missing. Here we present EuroBaTrait, the most comprehensive and up-to-date trait database covering 47 European bat species. The database includes data on 118 traits including genetic composition, physiology, morphology, acoustic signature, climatic associations, foraging habitat, roost type, diet, spatial behaviour, life history, pathogens, phenology, and distribution. We compiled the bat trait data obtained from three main sources: (i) a systematic literature and database search, (ii) unpublished data from European bat experts, and (iii) observations from large-scale monitoring programs. EuroBaTrait is designed to provide an important data source for comparative and trait-based analyses at the species or community level. The database also exposes knowledge gaps in species, geographic and trait coverage, highlighting priorities for future data collection. <br> The database consists of 16 tables linked by unique identifiers. The “Taxon” table includes the full scientific name and family of all taxa. The “Trait description” table represents the metadata, in which we describe the different traits (name, category, unit, data type) and define each trait. The “Trait reference” table lists the full references used to build the database. The database also includes one table per trait category (e.g. “Acoustic signature”) with the core observation values and associated information.
DOI: 10.6084/m9.figshare.25920463.v1
title: Accelerometer and Gryscope Sensor Data from Cows

description: Sensor data from an accelerometer (resampled_2_*) and gyroscope (resampled_16_*), were binned for every 1, 3, and 5 seconds. An additional 29 features are created by various methods.The datasets are used for cattle movement classification.
DOI: 10.15468/dl.zp8ymm
title: Occurrence Download

description: A dataset containing 1741 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Rudbeckia hirta L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1741 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013515-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25020821.v1
title: Gallblader Diseases Dataset

description: The dataset is composed of ultrasound images of the GB organ from inside the gastrointestinal tract. The dataset includes 9 classes according to anatomical landmarks. Each class represents a GB disease.
DOI: 10.6084/m9.figshare.8138270.v1
title: Metagenome TPM normalized gene abundances with taxonomy

description: This datafile contains TPM normalized values for ORFs in the co-assembly for each of the metagenomic samples from 2012 at the Linnaeus Microbial Observatory site. Each ORF in this file has taxonomic annotations.
DOI: 10.6084/m9.figshare.25451788.v1
title: High-density spike recordings from motor cortex in awake head-fixed mice [Shew Lab]

description: High-density spike recordings using a single Neuropixels probe. The probe spans all layers of mouse motor cortex. Mice were awake head-fixed and free to run on a wheel. Recordings were 45 - 60 min in duration and typically included about 100 to 200 units. Data includes spike times, unit IDs, and wheel speed. These data were analyzed and first published in the paper: Fontenele, A. J., Sooter, J. S., Norman, V. K., Gautam, S. H. & Shew, W. L. Low dimensional criticality embedded in high dimensional awake brain dynamics. Science Advances (2024). (Also on bioRxiv at doi:10.1101/2023.01.05.522896)Conditions for use of data: Please cite Fontenele et al Science Advances 2024.
DOI: 10.6084/m9.figshare.5544841.v1
title: Date of thunder and lightning events in Kyoto, Japan

description: Date of thunder and lightning events obtained from<br>diaries kept by Tsuneko Konoe (parts of AD1668–1694), the Myoho-in Temple (parts of AD1695–1767), the Nijo family (parts of AD1728–1730), and the Chion-in Temple (parts of AD1731–1767). The reliability of the daily weather descriptions from AD1679–1697 was confirmed by consulting the diary of Kaneteru Ichijo.<br><br>Reference：Hiroko Miyahara, Yasuyuki Aono, and Ryuho Kataoka, Searching for the 27-day solar rotational cycle in lightning events recorded in old diaries in Kyoto from the 17th to 18th century, Ann.<br>Geophys., 2017.<br>
DOI: 10.6084/m9.figshare.28927211.v1
title: Traditional wisdom on contraceptive methods insights from unani medical literature

description: Contraception, which involves techniques to prevent pregnancy, has played an essential role in human health for hundreds of years. 
This research explores the proficiency of Unani physicians in prescribing fertility control treatments. By showcasing both the historical and 
contemporary accomplishments of Unani practitioners, the study seeks to boost confidence in their methods and encourage the revival of this 
specialized knowledge. The study also explores Unani physicians' views on contraception and the prevention of unintended pregnancies, 
emphasizing the significance of historical medical texts from ancient Unani physicians such as Ibn Sina, Ali Ibn Abbas Al Majoosi, and others. 
These texts shed light on various contraceptive practices, including herbal treatments, pessaries, coitus interruptus, and plant and animal-based 
substances. The article underscores the relevance of understanding these historical perspectives, especially considering the growing interest in 
herbal contraceptives due to the side effects of modern synthetic methods. A deeper exploration of these ancient methods could contribute to the 
development of safer, natural contraceptive alternatives. As modern society faces increasing demand for contraception, exploring ancient practices 
provides valuable insights into the evolution of reproductive health and the search for safer options
DOI: 10.6084/m9.figshare.27604664.v1
title: Phylogeographic analysis of Y-chromosomal haplogroup C2a-M48-F8472, a minor paternal lineage of Han populations with possible ancestry of Xiongnu

description: Y-chromosome haplogroup C2a-M48-F8472, a unique paternal line in the ancient Xiongnu population, is concentrated in the modern Han people. The most closely related lineage of this paternal lineage is mainly distributed in Tungusic-, Mongolic-, and Turkic-speaking populations. To investigate the formation process of this unique distribution state. In total, 36 sequences of haplogroup C2a-M48-F8472 were analysed to generate a revised phylogenetic tree with age estimation and to explore the geographic distribution pattern. The results suggested that northern China is likely the diffusion centre of this paternal haplogroup. This lineage is concentrated in the Liu clan (刘姓) of Han populations and may have originated in the Tuge tribe (屠各) of Xiongnu populations. The initial expansion (∼2,600 years ago) and the second phase of expansion (∼1,570 years ago) of haplogroup C2a-M48-F8472 coincide with the earlier appearance and later disappearance of the Tuge tribe. As a sub-clade of M48, the history of F8472 suggested that ancient peoples related to Tungusic-speaking populations were intricately connected with the demographic history of populations in the Mongolian Plateau. The appearance of this paternal line in the Han population is helpful for understanding the mixed history of ancient and modern people in the Mongolian Plateau and Central China.
DOI: 10.6084/m9.figshare.7738979.v1
title: GRID release 2019-02-17

description: A database of over 95,000 research institutes with persistent identifiers.<br>Release notes:<br>Institutes added from the following sources: - Various sources including the United States, Europe, India and Brazil<br><br>QA: - Review of universities with wrong type 'Healthcare' - National Physical Laboratory from additional sources - Review of French "École" GRID records - Consolidation of GRID records belonging to "RISE Research Institutes of Sweden"<br>Note: the geonames information is from geonames.org and licensed as CC-BY 3.0.
DOI: 10.6084/m9.figshare.13655456.v1
title: Data for "Plant scientists research attention is skewed towards colorful, conspicuous, and broadly distributed flowers"

description: The database (tab-delimited file) and R script to generate the analysis in the study:<br>ADAMO M., CHIALVA M., CALEVO J., BERTONI F., DIXON W. K., MAMMOLA S. (2021). Plant scientists research attention is skewed towards colorful, conspicuous, and broadly distributed flowers. Nature Plants.<br>The database (Database_Adamo_et_al.txt) was created using a selection of Italian and French Alpine species. Traits and other data collection is described in the main text.
DOI: 10.6084/m9.figshare.24187119.v3
title: C.elegans neuropeptide connectome individual networks for NPP-GPCR pairs

description: Individual networks for each of the 92 NPP-GPCR pairs at EC50 500nM and scRNAseq threshold 4. All levels of diffusion are present.
DOI: 10.6084/m9.figshare.19473818.v2
title: Expression files of healthy human nucleus pulposus and annulus fibrosus data

description: Five human nucleus pulposus were subjected to 10x Genomics platform for scRNA-seq, related to GSE160756. Expression data were recorded as UMI matrix, of which rownames are genes and colnames are cells (nucleus pulposus), or cellranger output matrics (annulus fibrosus). Notably, Matrics_hAF_1 is the updated version of which in GEO website (human_AF_1: GSM4878543).
DOI: 10.6084/m9.figshare.26977456.v1
title: Source data of Universal Coherence of Elements in River-fed Earth-human Systems

description: The dataset includes metal abundance data for water, suspended particulate matter and sediment at 49 sampling stations along the Yellow River.
DOI: 10.6084/m9.figshare.21967430.v1
title: supplementary data 9

description: The source data behind the collagen quantification graphs in the paper
DOI: 10.6084/m9.figshare.28735472.v1
title: МОДИФИКАЦИРОВАНЫЙ АЛГОРИТМ ПОСТРОЕНИЯ

description: Нечеткий классификатор типа Min-Mаx — это алгоритм машинного обучения, который широко применяется для задач классификации. Одним из ключевых преимуществ этого классификатора является его способность к адаптации и объяснить результат своего решения. Хотя оригинальный алгоритм доказал свою эффективность, выявлен недостаток, который требует дальнейшего рассмотрения, такой как большое число правил. В докладе представлена модифицированная версия алгоритма нечеткого классификатора, разработанная с целью уменьшения числа правил. Проведены эксперименты модифицированной версии Min-Max для решения проблем кибербезопасности.
DOI: 10.15468/dl.xcpmet
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptoderma macrops Vaillant, 1886",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((7.9186 1.8496,7.918 1.8981,7.6701 2.1458,7.2444 2.1771,6.9224 1.8988,6.9096 1.8496,7.9186 1.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013516-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.14276965.v1
title: Gluten-free bread added with babassu ( Orbignya phalerata )mesocarp flour: physical, chemical and sensorial evaluation

description: ABSTRACT The acceptance of a gluten-free diet as in the case of celiac disease is not easy due to the food monotony, among others. On the other hand, the potential of use of babassu mesocarp flour (BMF) as human food is high. The present work evaluated the physical, chemical and sensorial properties of a gluten-free bread added of different percentages (F0 - control, F1 - 5% and F2 - 10%) of BMF. In the physical evaluation, the values of mass and diameter before and after baking, height, apparent volume, specific volume, expansion factor and heat factor were determined. The chemical evaluation was carried out in accordance with the official methods. In the sensorial evaluation, 50 untrained panelists of both sexes performed the affective sensory test of 9- point hedonic scale. Acceptability of samples was evaluated for the attributes general appearance, color, aroma, flavor and texture. The formulation F1 presented the best results, showing values of diameter before and after baking between F0 and F2 and the highest values of height, apparent volume, and specific volume. The BMF also improved the nutritional value of the breads, increasing the soluble fibers content and decreasing total carbohydrates. It still significantly increased the minerals content of F2. The pH of the samples was significantly different. However, the acid value of all formulations was acceptable. The sensory evaluation showed that the formulations added of BMF were well accepted by the panelists in all evaluated attributes. Therefore, the BMF showed to be a promising alternative for the development and enrichment of gluten-free breads.
DOI: 10.6084/m9.figshare.27019885.v1
title: Proteome profiling data for AS and NC

description: Proteome profiling data for AS patients and Normal Control subjects
DOI: 10.6084/m9.figshare.28688966.v1
title: Cell_counting.R

description: Code designed to assess and measure descriptive statistics of fluorescent foci in cells expressing proteins tagged with fluorophores.
DOI: 10.6084/m9.figshare.28938579.v1
title: Filling in the gaps: Distribution of the puff adder <i>Bitis arietans</i> (Merrem, 1820) in central South Africa and Lesotho – an investigation using mainly social media records and species distribution modelling

description: The puff adder (<i>Bitis arietans</i>) is widely distributed in Africa and south-western Arabia. Most published records for central South Africa and Lesotho are from surveys undertaken nearly 50 years ago, and although a large part of this area is considered well surveyed, existing occurrence records are sparse with several seemingly inexplicable gaps. Here we investigated the value of photographic and videographic records submitted to social media platforms, especially Facebook, as a source of contemporary geographical distribution data for the region. In addition, we used species distribution modelling to investigate areas of apparent absence. Careful screening and follow-up of Facebook records resulted in many high-quality records (85% of 432 records) with an adequate level of locality accuracy for detailed map plotting. Mapped records indicate that <i>B. arietans</i> is currently widespread in Free State Province, with the exception of a large area in the north. New records confirm that this species still occurs in most areas where it was previously recorded, but its known distribution in the far northern (Deneysville to Bothaville) and south-western (Petrusberg to Fauresmith and Smithfield) parts of the province has greatly increased. The filling-up of apparent gaps in distribution is probably primarily a reflection of better sampling coverage (increased availability of photo-recorded snakes) rather than an indication of recent range expansion. Species distribution modelling based on climatic (precipitation and temperature), elevation and land cover data suggested a high likelihood of suitable habitat for <i>B. arietans</i> throughout most of the study area. A notable exception to this was a largely transformed (mostly crop farming) area in the north of the province that currently lacks both social media and literature records, and which yielded a greatly reduced likelihood of suitable habitat. We contend that this citizen science social media approach represents a valuable tool for investigations of contemporary reptile distributions.
DOI: 10.6084/m9.figshare.29144737.v1
title: Additional file 1 of An automation framework for clinical codelist development validated with UK data from patients with multiple long-term conditions

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.21725348.v1
title: Morphological analysis

description: Data used in the morphological analysis for species description of <em>Hemachatus inyangae</em>.
DOI: 10.6084/m9.figshare.3635718.v2
title: code, dataset, result

description: Complex Detection in Dynamic PPI Network via Edge-Weighted Genes Co-Expression Analysis<br>It includes 2 data sets and java source file for our method
DOI: 10.6084/m9.figshare.23910249.v3
title: <b>Coastal Tsunami Prediction in Tohoku Region, Japan, Based on S-net Observations Using Artificial Neural Network</b>

description: In this folder, we provided synthetic earthquake data for model training, including:Parameters for Computing Seafloor deformation (sourcefile.zip)Synthetic offshore bottom pressure gauge data (OBPG.zip)Synthetic tide gauge observations (tide_gauge.zip)We selected 800 scenarios for model training out of 1000 hypothetical tsunamis, and the remaining 200 scenarios for model testing. The training dataset and testing dataset are both randomly selected and shuffled.Please note that because the artificial intelligence network is trained using Python language, Python sequences start numbering from 0. Therefore, these 1,000 scenarios are named from run_000000 to run_000999, including both training and testing files. The folder named run_000009 represents the No. 10 hypothetical tsunami scenario.<br>
DOI: 10.6084/m9.figshare.7607645.v1
title: Supplementary Table S1 from Porous substrate affects a subsequent attachment ability of the beetle <i>Harmonia axyridis</i> (Coleoptera, Coccinellidae)

description: Table S1 from Porous substrate affects a subsequent attachment ability of the beetle Harmonia axyridis (Coleoptera, Coccinellidae) by Elena V. Gorb, Wiebke Lemke and Stanislav N. Gorb. Summary of traction force values obtained in experiments on the porous substrate (porous) and in the first, second, third and fourth experiments on the glass surface (glass1, glass2, glass3 and glass4, respectively).
DOI: 10.6084/m9.figshare.14784987.v1
title: Nanpar_v2.0.pep

description: Protein file of the <i>Nanorana parkeri</i> genome.
DOI: 10.6084/m9.figshare.28723136.v1
title: Supplementary Material for: Ischemic Colitis and Small Bowel Ischemia in a Vaccinated Patient with Mild COVID-19 Infection: A Case Report

description: Introduction: COVID-19 infection can cause bowel ischemia, with an incidence ranging from 0.22% to 10.5. The COVID-19 vaccine reduces respiratory symptoms and the need for cardiopulmonary support. However, its effects on other manifestations, such as bowel ischemia, have not been extensively studied. Despite having mild respiratory symptoms and receiving three doses of the COVID-19 vaccine, our patient developed ischemic colitis after her first infection and small bowel ischemia following her second infection.

Case Report: An 86-year-old woman presented to the emergency department (ED) with abdominal pain after a mild COVID-19 infection. She was admitted with ischemic colitis, but conservative treatment failed. In the operating room (OR), her entire colon was found to be ischemic, necessitating a total colectomy with end ileostomy. Nine months later, she returned to the ED with mild respiratory symptoms and severe right upper quadrant pain. Imaging revealed pneumoperitoneum and a mid-abdominal abscess. An emergency laparotomy revealed small bowel perforation, with final pathology confirming ischemia. The patient had received three doses of the COVID-19 vaccine and was on therapeutic anticoagulation for a history of pulmonary embolism.

Conclusion:
COVID-19 may increase the risk of bowel and colon ischemia even after vaccination. Patients presenting to the ED with severe abdominal pain and a recent COVID-19 infection should be carefully evaluated for ischemic events.
DOI: 10.6084/m9.figshare.13180649.v1
title: JAMES-supplement data

description: Supplementary data for JAMES<br>
DOI: 10.6084/m9.figshare.21507396.v2
title: The genotype of angel wing pekin duck

description: angel wing genotype
DOI: 10.6084/m9.figshare.27651537.v1
title: <b>Contingency Learning in Social Cues: Neural Engagement and Emotional Modulation by Facial Expressions</b>

description: SPM files for each contrast has been presented