cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1264919.v1
title: Temperature response curves of photosynthesis (and underlying biochemistry) over 3 seasons in Eucalyptus globulus grown in a factorial design of elevated CO2 and warming.

description: Gas exchange data from Crous et al. 2013 in Global Change Biology including CO2 response curves at 5 temperature and quantification of Rlight using the Laisk method at 4 different temperatures.<br>There are 3 files including in this dataset, 1 raw data file<br>(name: WTC_Temp&CO2_CM_GX-AciTemp_20101202-20110908_R)<br>and 2 processed files including fits to the classic photosynthesis model and, Rlight and gamma* data.<br>Names:<br>(WTC_Temp&CO2_CM_GX-AciFits_20101202-20110908_L2 and WTC_Temp&CO2_CM_GX-Rlight_20110311-20110318_L2).
DOI: 10.6084/m9.figshare.1264062
title: Source Arrival.py

description: Compute the amount of bases read over time.
DOI: 10.6084/m9.figshare.1279394.v312
title: Germline encoded anti-A-reactive IgM arising from growth-dependent and aberrant O-GalNAc glycosylations.*

description: While neither <i>N</i>- nor <i>O</i>-linked <i>N</i>-acetyl-D-galactosamine (D-GalNAc)-determined, native blood group A-like specificities have yet been demonstrated in prokaryotic microorganisms as a source of the human anti-A isoagglutinin production, the <i>O</i>-GalNAc glycan-bearing ovarian glycolipids, discovered in C57BL/10 mice, are complementary to the syngeneic anti-A-reactive, secretory immunoglobulin M (IgM), which does not appear in animals subjected to an ovariectomy prior to the onset of puberty. This murine anti-A “auto” antibody and the human innate or non-immune anti-A isoagglutinin show identical serological reaction patterns. In mouse and man, this molecule most likely gets its complementary footprints from the early growth-dependent, trans-species <i>O</i>-GalNAc glycosylation of proteins and subsequent GalNAc transferase depletion that completes the cell differentiation processes and results in release of complementary protein(s) involving the secretory IgM, which might establish this mechanism through expression of germline-specific serine residues and reveals the structure of the volatilely expressed, “lost” glycan. These early or first <i>O</i>-GalNAc glycosylations of proteins appear metabolically related to those of the mucin-type, “aberrant” monosaccharide GalNAcα1-<i>O</i>-Ser/Thr-R or Tn antigen and explain the anti-Tn cross-reactivity of anti-A-specific immunoglobulins and pronounced occurrence of cross-reactive anti-Tn antibody in the plasma of human histo (blood) group O. In fact, in the human blood group O, an A-allelic, phenotype-specific GalNAc glycosylation of plasma proteins does not occur and affect the levels of the anti-Tn antibody, which may function as a growth regulator that depending on its levels, initiates the process of growth inhibition through enzyme-substrate competition with subsequent trans-species <i>O</i>-GalNAc-glycosylations and mediates autologous cellular cytotoxicity.
DOI: 10.6084/m9.figshare.1264056
title: Summary food web of dengue fever mosquitoes

description: Summary food web links from data collected ad hoc from reports in the dengue literature of parasites, predators, and repellents of <em>Aedes aegypti</em> and <em>A. albopictus</em> mosquitoes. The first two columns are the resource-consumer pair. The source publications are referenced in the third column. These data were originally reported and attached to a dengue blogpost: https://sites.google.com/a/ncsu.edu/dengue-blog/emily-s-dengue-blog/communityecologyofdengue
DOI: 10.6084/m9.figshare.1264062.v1
title: Source Arrival.py

description: Compute the amount of bases read over time.
DOI: 10.6084/m9.figshare.1264056.v1
title: Summary food web of dengue fever mosquitoes

description: Summary food web links from data collected ad hoc from reports in the dengue literature of parasites, predators, and repellents of <em>Aedes aegypti</em> and <em>A. albopictus</em> mosquitoes. The first two columns are the resource-consumer pair. The source publications are referenced in the third column. These data were originally reported and attached to a dengue blogpost: https://sites.google.com/a/ncsu.edu/dengue-blog/emily-s-dengue-blog/communityecologyofdengue
DOI: 10.6084/m9.figshare.1279394.v313
title: Germline encoded anti-A-reactive IgM arising from growth-dependent and aberrant O-GalNAc glycosylations.*

description: <br> While neither <i>N</i>- nor <i>O</i>-linked <i>N</i>-acetyl-D-galactosamine (D-GalNAc)-determined, native blood group A-like specificities have yet been demonstrated in prokaryotic microorganisms as a source of the human "natural" anti-A/B isoagglutinin production, the <i>O</i>-GalNAc glycan-bearing ovarian glycolipids, discovered in C57BL/10 mice, are complementary to the syngeneic anti-A-reactive, secretory immunoglobulin M (IgM), which does not appear in animals subjected to an ovariectomy prior to the onset of puberty. This murine anti-A “auto” antibody and the human innate or non-immune anti-A isoagglutinin show identical serological reaction patterns. In mouse and man, this molecule most likely gets its complementary footprints from the early growth-dependent, trans-species <i>O</i>-GalNAc glycosylation of proteins and subsequent GalNAc transferase depletion that completes the cell differentiation processes and results in release of complementary protein(s) involving the secretory IgM, which might establish this mechanism through expression of germline-specific serine residues and reveals the structure of the volatilely expressed, “lost” glycan. These early or first <i>O</i>-GalNAc glycosylations of proteins appear metabolically related to those of the mucin-type, “aberrant” monosaccharide GalNAcα1-<i>O</i>-Ser/Thr-R or Tn antigen and explain the anti-Tn cross-reactivity of anti-A-specific immunoglobulins and pronounced occurrence of cross-reactive anti-Tn antibody in the plasma of human histo (blood) group O. In fact, in the human blood group O, an A-allelic, phenotype-specific GalNAc glycosylation of plasma proteins does not occur and affect the levels of the anti-Tn antibody, which may function as a growth regulator that depending on its levels, initiates the process of growth inhibition through enzyme-substrate competition with subsequent trans-species <i>O</i>-GalNAc-glycosylations and mediates autologous cellular cytotoxicity.
DOI: 10.6084/m9.figshare.1264043
title: Preliminary review of reports of co-infections involving dengue

description: Early data collection based on a Pubmed search of papers reporting co-infeciton (and synonyms) with dengue. Human or mosquito studies were including, the only criteria were at least one host with more than one reported infection comprising at least one dengue serotype infection. These data were originally reported and attached to a dengue blogpost: https://sites.google.com/a/ncsu.edu/dengue-blog/emily-s-dengue-blog/coinfectionwithdengue
DOI: 10.6084/m9.figshare.1264043.v1
title: Preliminary review of reports of co-infections involving dengue

description: Early data collection based on a Pubmed search of papers reporting co-infeciton (and synonyms) with dengue. Human or mosquito studies were including, the only criteria were at least one host with more than one reported infection comprising at least one dengue serotype infection. These data were originally reported and attached to a dengue blogpost: https://sites.google.com/a/ncsu.edu/dengue-blog/emily-s-dengue-blog/coinfectionwithdengue
DOI: 10.6084/m9.figshare.1264015
title: Avanços, retrocessos e estagnações: um balanço da Lei 12.485

description: After 4 years of discussion and passage through the Chamber of Deputies and the Senate, the law 12.485 approved by the President of the Republic, on the 12th of September of 2011, still divides opinions about the real increase of the competitiveness, the inclusion of small producers and the increase of the offer of the national content. In this sense, the present paper analyses the firsts changes that occurred in the niche of the Pay TV after the implementation of the law which regulates the conditioned access audiovisual communication, considering that 2014 is the year of the full force of the law regarding the minimum amount of time of Brazilian content in the qualified space channels. The documents available in the website of Ancine which deal with the conditioned access audiovisual market were analysed and one finds that the large media conglomerates have been using various strategies in order to bypass the law and keep the market virtually unaltered; and that the increase in the amount of the offer of Brazilian content is still incipient.
DOI: 10.6084/m9.figshare.1264011
title: PRINCIPLE OF EQUALITY IN DIFFERENTIAL SCHEME FOR PUBLIC CONTRACTS

description: This article aims to address the progress of integration between rules and principles in the Act that established the 12.462/2011 DIFFERENTIAL TREATMENT OF PÚBLICS CONTRACTS, which aimed to provide means quicker initial procurement for events won by Brazil in 2007 and 2009, OLYMPIC GAMES 2016 and WORLD CUP 2014. The research sought to emphasize the progress of this integration in the public interest, in addition to pointing out the positive aspects of inclusion and sustainability of the citizen and the company as a result of the new standard. The importance of the DRC today on the likes of licitations as a preview of a new general legislation regulating the issue and revise the law 8.666/1993 was proven at the time were included in such a system hiring in health, education and PAC (program acceleration of growth).
DOI: 10.6084/m9.figshare.1264015.v1
title: Avanços, retrocessos e estagnações: um balanço da Lei 12.485

description: After 4 years of discussion and passage through the Chamber of Deputies and the Senate, the law 12.485 approved by the President of the Republic, on the 12th of September of 2011, still divides opinions about the real increase of the competitiveness, the inclusion of small producers and the increase of the offer of the national content. In this sense, the present paper analyses the firsts changes that occurred in the niche of the Pay TV after the implementation of the law which regulates the conditioned access audiovisual communication, considering that 2014 is the year of the full force of the law regarding the minimum amount of time of Brazilian content in the qualified space channels. The documents available in the website of Ancine which deal with the conditioned access audiovisual market were analysed and one finds that the large media conglomerates have been using various strategies in order to bypass the law and keep the market virtually unaltered; and that the increase in the amount of the offer of Brazilian content is still incipient.
DOI: 10.6084/m9.figshare.1264011.v1
title: PRINCIPLE OF EQUALITY IN DIFFERENTIAL SCHEME FOR PUBLIC CONTRACTS

description: This article aims to address the progress of integration between rules and principles in the Act that established the 12.462/2011 DIFFERENTIAL TREATMENT OF PÚBLICS CONTRACTS, which aimed to provide means quicker initial procurement for events won by Brazil in 2007 and 2009, OLYMPIC GAMES 2016 and WORLD CUP 2014. The research sought to emphasize the progress of this integration in the public interest, in addition to pointing out the positive aspects of inclusion and sustainability of the citizen and the company as a result of the new standard. The importance of the DRC today on the likes of licitations as a preview of a new general legislation regulating the issue and revise the law 8.666/1993 was proven at the time were included in such a system hiring in health, education and PAC (program acceleration of growth).
DOI: 10.6084/m9.figshare.1263998
title: THE CONSUMPTION AWARENESS AND THE EDUCATION TOWARDS CONSUMPTION AS A SOCIAL FUNCTION OF THE COMPANY

description: With the advent of the Social State of Law, the individualistic business culture, whose only goal was to pursue profit and the resulting enrichment of its owners, begins to be questioned. Since then, it is possible to verify a gradual abandonment of the typical business ideals of the Liberal State and, also, the advancement of a social business culture. Nowadays, the ideals that guide Brazilian State, which are written in the Constitution of 1988, reflect this change in the proceeding of the enterprise, that now persues the scope of satisfying the interests of the whole society, the so-called social function of the company. Clearly, this new finalistic content presents reflections in all branches of business activities. This study will examine the way in which such content shall inform the consumption relations that result from regular business activities, focusing on the need of consumer awareness by the supplier, by the education towards consumption.
DOI: 10.6084/m9.figshare.1263997
title: Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms (file : CULTUREid_taxo_GB_V4seq.tab)

description: file : CULTUREid_taxo_GB_V4seq.tab Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms (file : readme_Forster_et_al_BMC) http://dx.doi.org/10.6084/m9.figshare.1264013 Background: High-throughput sequencing technologies are lifting major limitations to molecular-based ecological studies of eukaryotic microbial diversity, but in silico analyses of the resulting millions of short amplicons remain a major bottleneck for these approaches. Here, we introduced the analytical and statistical framework of sequence similarity networks, increasingly used in evolutionary studies and graph theory, into the field of ecology to analyze novel pyrosequenced V4 SSU-rDNA sequence data sets in the context of previous studies, including SSU-rDNA Sanger sequence data from cultured ciliates and from previous environmental diversity inventories.<br>Results: Our broadly applicable protocol quantified progress in the description of genetic diversity of ciliates by environmental rRNA amplicons studies, detected a fundamental historical bias, the tendency to recover already known groups, in these surveys, and revealed substantial amounts of hidden microbial diversity. Moreover, network measures demonstrated that ciliates are not globally dispersed, but present strong local patterns at intermediate geographical scale, as observed for bacteria, plants, and animals.<br>Conclusions: Although currently available ‘universal’ primers used for local in-depth sequencing surveys provide little hope to exhaust the significantly higher ciliate (and most likely microbial) diversity than previously thought, sequence similarity networks, since they identify groups of divergence sequences sharing distinctive similarities, offer a promising way to guide the design of novel primers and to further explore such a vast and structured microbial diversity.
DOI: 10.6084/m9.figshare.1263998.v1
title: THE CONSUMPTION AWARENESS AND THE EDUCATION TOWARDS CONSUMPTION AS A SOCIAL FUNCTION OF THE COMPANY

description: With the advent of the Social State of Law, the individualistic business culture, whose only goal was to pursue profit and the resulting enrichment of its owners, begins to be questioned. Since then, it is possible to verify a gradual abandonment of the typical business ideals of the Liberal State and, also, the advancement of a social business culture. Nowadays, the ideals that guide Brazilian State, which are written in the Constitution of 1988, reflect this change in the proceeding of the enterprise, that now persues the scope of satisfying the interests of the whole society, the so-called social function of the company. Clearly, this new finalistic content presents reflections in all branches of business activities. This study will examine the way in which such content shall inform the consumption relations that result from regular business activities, focusing on the need of consumer awareness by the supplier, by the education towards consumption.
DOI: 10.6084/m9.figshare.1264009.v2
title: Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms (file : details_V4ciliates_Biomarks.tab)

description: file : details_V4ciliates_Biomarks.tab Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms (file : readme_Forster_et_al_BMC) http://dx.doi.org/10.6084/m9.figshare.1264013 Background: High-throughput sequencing technologies are lifting major limitations to molecular-based ecological studies of eukaryotic microbial diversity, but in silico analyses of the resulting millions of short amplicons remain a major bottleneck for these approaches. Here, we introduced the analytical and statistical framework of sequence similarity networks, increasingly used in evolutionary studies and graph theory, into the field of ecology to analyze novel pyrosequenced V4 SSU-rDNA sequence data sets in the context of previous studies, including SSU-rDNA Sanger sequence data from cultured ciliates and from previous environmental diversity inventories.<br>Results: Our broadly applicable protocol quantified progress in the description of genetic diversity of ciliates by environmental rRNA amplicons studies, detected a fundamental historical bias, the tendency to recover already known groups, in these surveys, and revealed substantial amounts of hidden microbial diversity. Moreover, network measures demonstrated that ciliates are not globally dispersed, but present strong local patterns at intermediate geographical scale, as observed for bacteria, plants, and animals.<br>Conclusions: Although currently available ‘universal’ primers used for local in-depth sequencing surveys provide little hope to exhaust the significantly higher ciliate (and most likely microbial) diversity than previously thought, sequence similarity networks, since they identify groups of divergence sequences sharing distinctive similarities, offer a promising way to guide the design of novel primers and to further explore such a vast and structured microbial diversity.
DOI: 10.6084/m9.figshare.1264009.v1
title: details_V4ciliates_Biomarks.tab

description: Background: High-throughput sequencing technologies are lifting major limitations to molecular-based ecological studies of eukaryotic microbial diversity, but in silico analyses of the resulting millions of short amplicons remain a major bottleneck for these approaches. Here, we introduced the analytical and statistical framework of sequence similarity networks, increasingly used in evolutionary studies and graph theory, into the field of ecology to analyze novel pyrosequenced V4 SSU-rDNA sequence data sets in the context of previous studies, including SSU-rDNA Sanger sequence data from cultured ciliates and from previous environmental diversity inventories.<br>Results: Our broadly applicable protocol quantified progress in the description of genetic diversity of ciliates by environmental rRNA amplicons studies, detected a fundamental historical bias, the tendency to recover already known groups, in these surveys, and revealed substantial amounts of hidden microbial diversity. Moreover, network measures demonstrated that ciliates are not globally dispersed, but present strong local patterns at intermediate geographical scale, as observed for bacteria, plants, and animals.<br>Conclusions: Although currently available ‘universal’ primers used for local in-depth sequencing surveys provide little hope to exhaust the significantly higher ciliate (and most likely microbial) diversity than previously thought, sequence similarity networks, since they identify groups of divergence sequences sharing distinctive similarities, offer a promising way to guide the design of novel primers and to further explore such a vast and structured microbial diversity.
DOI: 10.6084/m9.figshare.1264013.v1
title: Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms

description: Background: High-throughput sequencing technologies are lifting major limitations to molecular-based ecological studies of eukaryotic microbial diversity, but in silico analyses of the resulting millions of short amplicons remain a major bottleneck for these approaches. Here, we introduced the analytical and statistical framework of sequence similarity networks, increasingly used in evolutionary studies and graph theory, into the field of ecology to analyze novel pyrosequenced V4 SSU-rDNA sequence data sets in the context of previous studies, including SSU-rDNA Sanger sequence data from cultured ciliates and from previous environmental diversity inventories.<br>Results: Our broadly applicable protocol quantified progress in the description of genetic diversity of ciliates by environmental rRNA amplicons studies, detected a fundamental historical bias, the tendency to recover already known groups, in these surveys, and revealed substantial amounts of hidden microbial diversity. Moreover, network measures demonstrated that ciliates are not globally dispersed, but present strong local patterns at intermediate geographical scale, as observed for bacteria, plants, and animals.<br>Conclusions: Although currently available ‘universal’ primers used for local in-depth sequencing surveys provide little hope to exhaust the significantly higher ciliate (and most likely microbial) diversity than previously thought, sequence similarity networks, since they identify groups of divergence sequences sharing distinctive similarities, offer a promising way to guide the design of novel primers and to further explore such a vast and structured microbial diversity.
DOI: 10.6084/m9.figshare.1263997.v2
title: Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms (file : CULTUREid_taxo_GB_V4seq.tab)

description: file : CULTUREid_taxo_GB_V4seq.tab Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms (file : readme_Forster_et_al_BMC) http://dx.doi.org/10.6084/m9.figshare.1264013 Background: High-throughput sequencing technologies are lifting major limitations to molecular-based ecological studies of eukaryotic microbial diversity, but in silico analyses of the resulting millions of short amplicons remain a major bottleneck for these approaches. Here, we introduced the analytical and statistical framework of sequence similarity networks, increasingly used in evolutionary studies and graph theory, into the field of ecology to analyze novel pyrosequenced V4 SSU-rDNA sequence data sets in the context of previous studies, including SSU-rDNA Sanger sequence data from cultured ciliates and from previous environmental diversity inventories.<br>Results: Our broadly applicable protocol quantified progress in the description of genetic diversity of ciliates by environmental rRNA amplicons studies, detected a fundamental historical bias, the tendency to recover already known groups, in these surveys, and revealed substantial amounts of hidden microbial diversity. Moreover, network measures demonstrated that ciliates are not globally dispersed, but present strong local patterns at intermediate geographical scale, as observed for bacteria, plants, and animals.<br>Conclusions: Although currently available ‘universal’ primers used for local in-depth sequencing surveys provide little hope to exhaust the significantly higher ciliate (and most likely microbial) diversity than previously thought, sequence similarity networks, since they identify groups of divergence sequences sharing distinctive similarities, offer a promising way to guide the design of novel primers and to further explore such a vast and structured microbial diversity.