cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22257352.v5
title: Underlying data: In silico drug repurposing using molecular docking and dynamics to target the protein interaction between the SARS-CoV -2 S-glycoprotein and the ACE2 receptor

description: Vitrual screening project file with raw data and PDB structures of hit compounds in docked conformations
DOI: 10.6084/m9.figshare.3568680.v1
title: Appendix G. Estimated coefficients of explanatory parameters in the best generalized linear mixed model (GLMM) for richness and diversity (the inverse Simpson’s index of diversity) of butterfly and orthopteran groups in 2011 and 2012, and a figure for relationships of herbivorous insect diversity (the inverse Simpson’s index of diversity) of body-size groups, larval-host/mandibular groups, and abundance (No. of individuals) groups with resource of perennial plant variables and mowing frequency.

description: Estimated coefficients of explanatory parameters in the best generalized linear mixed model (GLMM) for richness and diversity (the inverse Simpson’s index of diversity) of butterfly and orthopteran groups in 2011 and 2012, and a figure for relationships of herbivorous insect diversity (the inverse Simpson’s index of diversity) of body-size groups, larval-host/mandibular groups, and abundance (No. of individuals) groups with resource of perennial plant variables and mowing frequency.
DOI: 10.3535/zwc-etr-970
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13456028.v1
title: Baseline survey data

description: Data collected in a baseline study of a project testing the effect of a community intervention on sexual and gender-based violence.
DOI: 10.6084/m9.figshare.14175573.v1
title: Mobile brain/body imaging (MoBI) during sensorimotor balance perturbations

description: EEG, EMG, EOG, and sacrum/head position data from 30 participants during sensorimotor balance perturbations. Data is formatted as an EEGLAB .set file. All data streams are synchronized and can be found in the EEG.data section. The order of electrodes is: EEG (#1-128), neck EMG (#129-130), EOG (#131-133), lower leg EMG (#134-141), body motion markers (#142-147), and load cells (#148-149). Digitized electrode locations are included for electrodes 1-133.<br>Neck EMG channel labels: left neck EMG (#129), right neck (#130).<br>EOG channel labels: electrode right of right eye (#131), electrode left of left eye (#132), electrode above left eye (#133).<br><br>Lower leg EMG electrode labels: LTA (left tibialis anterior), LSOL (left soleus), LMG (left medial gastrocnemius), LPL (left peroneus longus), RTA (right tibialis anterior), RSOL (right soleus), RMG (right medial gastrocnemius), RPL (right peroneus longus).<br>Motion capture marker labels: SACR (sacrum), HEAD (head). Directions: x (mediolateral), y (anterior/posterior), z (superior/inferior). Larger values are in the left, posterior, and superior directions for x, y, and z, respectively.<br>Load cell labels: LoadCell_l (left side), LoadCell_r (right side). These were used to determine the onset timing and force applied during the pull perturbations.<br>Units: Electrodes #1-133 are in uV, #134-141 are in mV, #142-147 are in mm, and #148-149 are in N.
DOI: 10.3535/1kp-41r-kvt
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ec0-zv2-bpe
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1609584.v1
title: Unraveling the origin of splice switching activity of hemoglobin beta-globin gene modulators via QSAR modeling

description: This supplementary data is comprised of 3 files as follows:
1. active.zip (CSV of the set of active compounds)
2. inactive.zip (CSV of the set of inactive compounds)
3. 50models.zip (CSV for 50 models derived from independent data splits)
Note: Each CSV file are comprised of the SMILES, CID, Activity class label for 50models.zip as well as the selected features.
DOI: 10.3535/6aj-2lx-3l8
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ph6-gwx-lhs
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13353074.v2
title: Source Data.xlsx

description: Source Data are compiled in a single excel file with data for each table in a separate sheet. The data comprise major and trace element results for clinopyroxene, major element results for spinel and plagioclase.<br>
DOI: 10.6084/m9.figshare.17121080.v1
title: Dataset for the manuscript entitled "Adaptation and psychometric evaluation of Hungarian version of the Fear of COVID-19 Scale"

description: Dataset for the manuscript entitled "Adaptation and psychometric evaluation of Hungarian version of the Fear of COVID-19 Scale"
DOI: 10.6084/m9.figshare.28342511.v2
title: Bordezac PIXE geochemical maps

description: Bordezac PIXE maps (EDF files) and instrument camera images during the acquisition. Data from 2018 & 2019 campaigns at AGLAE (IPERION CH). <br>Zip file that needs to be unzip.
DOI: 10.3535/d35-x93-r0n
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zt6-nwg-wbk
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25634031.v1
title: Converging Signals of Emotion and Sleep

description: Data files after hard-coding emotional prior knowledge into sleep raw input signal
DOI: 10.3535/afb-7eh-89d
title: †Siphonotreta Verneuil, 1845

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y2f-6gx-zts
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nwm-5dx-thq
title: Calcite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vbt-kdz-3vh
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11886981.v3
title: Dataset for the manuscript: Two-photon Absorption Cross-sections in Fluorescent Proteins Containing Non-canonical Chromophores Using Polarizable QM/MM

description: Data here included is part of the manuscript:<br>"Two-photon Absorption Cross-sections in Fluorescent Proteins Containing Non-canonical Chromophores Using Polarizable QM/MM"<br>This dataset contains four main folders divided as follows:<br><b>i)</b> oniom_optimized: .log output files corresponding to the optimized structures of the nCC-DsRed systems using QM/MM ONIOM scheme. <br><b>ii)</b> 1pa: .out files corresponding to the one-photon absorption computations performed in vacuum and using QM/MM PE scheme. <br><b>iii) </b>2pa: .out files corresponding to the two-photon absorption computations performed in vacuum and using QM/MM PE scheme.<br><br><b>iv)</b> pyframe: this folder includes an example set of files (PyFraME input and .pdb system files) useful to carry out the fragmentation of the system and obtaining the potential file (.pot) through PyFraME and LoProp. <br><br><br>
DOI: 10.6084/m9.figshare.14700402.v1
title: List of documents.docx

description: This table provides the list of OECD documents that we used to identify and analyse the OECD's legitimation strategies.
DOI: 10.3535/35f-62b-qrw
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7n7-3kb-p52
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hzv-crg-5ag
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ly6-91c-st8
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11695236.v1
title: Anatomy of the right ventricle of the heart in the young adult

description: Anatomy of the right ventricle (RV) of 89 young subjects <b> </b> <b>Cohort </b>40 Preterm and 49 Term. Age: 18 - 40 years old (average Preterm: 22.7 years, Full term: 23.6 years) Data from YACHT: https://www.rdm.ox.ac.uk/about/our-clinical-facilities-and-mrc-units/cardiovascular-clinical-research-facility/ongoing-clinical-studies/yacht <b>Terms </b>Please acknowledge this source of data, and associated publication: A Mohamed et al. “Multimodality Imaging Demonstrates Reduced Right Ventricular Function Independent of Pulmonary Physiology in Moderately Preterm-Born Adults” <b> </b> <b>Methods overview </b>RV end diastolic anatomy was reconstructed from the contours using high order interpolation meshes. The 89 meshes were then spatially aligned by their centre of mass, and by an orientation defined by their basal plane and the left to right direction set by the centre of mass of the RV and left ventricle. A statistical shape model was then built with a principal component analysis (PCA). <b>Data shared</b> <b>1. AtlasMeshData.zip</b>, where each case has 1.1 MaskLV.vtk: The mask of the left ventricular (LV) myocardium, LV blood pool and RV blood pool from the short axis magnetic resonance image in end diastole 1.2 MaskLV_mesh files (.exelem and .exnode): the cubic Hermite mesh that was personalised to the RV anatomy 1.3 Image_Initialization.jpg: image of the overlay between the template RV mesh used for personalization and the mask of the RV blood pool 1.4 ImageDistances2ClosestPointbinary_meshxxxxxxxxxx.jpg: image of the distances between the RV mesh and the mask of the RV myocardium (xxxxxxxxxx is a digit encodign for the time when the image was generated) 1.5 PersonalizationReportbinary.txt: file with metrics of mesh fitting accuracy and quality <b>2. VTKMeshes.zip</b>: the collection of all the LV shapes in VTK format, after correction of centre of mass and left to right orientation. <b>3. AtlasModesHG5s4_s4_c2.pdf</b>: illustration of all the 20 first modes of anatomical variation, together with the boxplots of the two subgroups.<br>
DOI: 10.6084/m9.figshare.28278821.v1
title: The data and codes for spatiotemporal risk assessment

description: The data and codes for spatiotemporal risk assessment, including the code and epidemiological investigation dataset of COVID-19 Shijiazhuang city in China.
DOI: 10.3535/ltb-syt-q2j
title: Fluorite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/114-0ct-3d8
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/26b-5bf-5hb
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8tw-ydb-8be
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b6p-fva-bay
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/frr-qg0-41v
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22717591.v1
title: Ribosome profiling data from the model diatom <em>Thalassiosira pseudonana</em>

description: fastq data from ribosome profiling run described in the protocol paper 'Ribosome profiling in the model diatom <em>Thalassiosira pseudonana'</em>
DOI: 10.3535/2q4-jfh-5fh
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mwr-6ye-6n3
title: †Endoceras J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4288877.v1
title: moravec_data.rar

description: Data used in the article "Arithmetic on your phone: a large scale investigation of simple additions and multiplications" accepted for publication in Plos One
DOI: 10.3535/h9w-2th-7kx
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xnw-z57-nd1
title: †Bellerophon Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4838099.v1
title: Lupinus albus - CRootBox parameter file

description: CRootbox parameter file for Lupinus albus.<br><br>from:<br><br>Recovering Root System Traits Using Image Analysis Exemplified by Two-Dimensional Neutron Radiography Images of Lupine Leitner D, Felderer B, Vontobel P, Schnepf A PLANT PHYSIOLOGY, 164, 24-35, 2014
DOI: 10.3535/139-kps-pp1
title: †Bellerophon Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5wn-z4q-403
title: †Bellerophon Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26870461.v3
title: AutoMIND: model configurations, simulations, target observations (experimental data), and trained deep generative models

description: Data here include:Training (prior samples) and discovered (posterior samples) parameter configurations of the clustered-AdEx spiking neural network,summary features of the corresponding simulations,summary features of the target observations (on which posterior density estimators are conditioned),and trained deep generative models (Normalizing Flow-based neural density estimators).For details, see: Gao et al., 2024, Deep inverse modeling reveals dynamic-dependent invariances in neural circuit mechanisms.<br>Data directories are organized as follows:./training_prior_samples/training.zip: 1-million parameter configurations and summary features from model simulations used to train deep generative models.heldout.zip: additional network simulations not used for DGM training, a subset of which was used as synthetic observations../discovered_posterior_samples/organoids.zip: discovered model configurations consistent with human brain organoid network burst across development. See ./organoid_predictives.png.mouse-vis.zip: discovered model configurations consistent with population firing rate PSD of Neuropixels recordings from mouse visual areas. See ./allen_predicitves_all.png.mouse-hc.zip: discovered model configurations consistent with population firing rate PSD of Neuropixels recordings from mouse hippocampal areas. See ./allen_predicitves_all.png.synthetic.zip: discovered model configurations consistent with population firing rate PSD of synthetic observations, i.e., held-out network simulations. See ./synthetic.png.<b>NOTE</b>: all zip files also contain the prior distribution, posterior density estimator, and config files necessary for running the simulations and analyses../dgms/burst_posterior.pickle: trained conditional density estimator that approximates the posterior distribution conditioned on network burst summary features.psd_posterior.pickle: trained conditional density estimator that approximates the posterior distribution. conditioned on network firing rate power spectral densities../observations/allenvc_summary: population firing rate PSD of Neuropixels recordings.synthetic_summary: various summary features of synthetic observations (i.e., held-out network simulations).organoid_summary: population firing burst statistics of organoid multi-electrode array recordings.<br>It's recommended to keep the full path when downloading and unzipping for consistency with e.g., code demo.Note that the raw simulation (i.e., spike times from recorded neurons) data files are too large and exceed the figshare upload file size limit. They will be provided elsewhere and linked here.
DOI: 10.3535/84r-qny-j8h
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yxz-n55-lbx
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/30h-p5k-31t
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/83z-vw5-18r
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28405109.v1
title: Data for Beyond Economic Growth paper..xlsx

description: This is data for a paper I submitted to a journal
DOI: 10.6084/m9.figshare.7613528.v1
title: Intron Retention data (using iDiffIR)

description: Intron retention data for Collins et al. 2019<br>This contains data for 3 mutant lines from the mouse DMDD project (Dhx35, Morc2a and Hmgxb3).<br>Repeat annotation identified by RepeatMasker was downloaded (http://www.repeatmasker.org/genomes/mm10/RepeatMasker-rm405-db20140131/mm10.fa.out.gz) and filtered to remove repeats marked as Simple_repeat or Low_complexity.In order to reduce potential mapping bias, FASTQ files were realigned to the GRCm38 reference genome using TopHat259 (v2.0.13, options: --library-type fr-firststrand), but without a transcriptome reference.Counts for repeats were produced using htseq-count61 (v0.6.0 options: --stranded=reverse). Intronic retention was examined using iDiffIR (https://bitbucket.org/comp_bio/idiffir)<br>
DOI: 10.3535/rwh-ckq-sw3
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1246725.v3
title: Clinical Research: A Globalized Network

description: These files relate to data extracted from ClinicalTrials.gov. In the database file, data for individual clinical trials are included, and attributes include study identifier, study type, trial dates, interventions, sample size, countries in which the study was conducted, etc. The Edges file contains geographic data derived from the clinical trials data set that can be used to generate networks to illustrate geographic connectivity through clinical research, using open access software such as Gephi. The Gephi file includes networks for all countries worldwide, as well as regional networks for each major grographic region. The figures are network diagrams generated by Gephi showing geographic connectivity among individual countries through common participation in multinational clinical trials. The thickness of the connecting lines (edges) reflects the strength of a connection.
DOI: 10.17632/xhx4v8k42g
title: Differentially expressed genes of Brassica rapa ssp. chinensis sprouts grown under blue or red light

description: Pak choi (Brassica rapa ssp. chinensis) sprouts were germinated in complete darkness for 5 days. Subsequently, the sprouts were grown under blue or red LEDs for 6 days. After harvest, RNA-Seq analysis was performed and differentially expressed genes were determined. The table shows the 1,000 most differentially expressed annotated genes. The data are connected to the article: K. Frede, M. Schreiner, S. Baldermann, Light quality-induced changes of carotenoid composition in pak choi Brassica rapa ssp. chinensis, JPPB (2019), https://doi.org/10.1016/j.jphotobiol.2019.02.001
DOI: 10.3535/fac-pqn-bjz
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xks-dr3-fdy
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20134535.v1
title: primary ATRT single cell RNA-seq

description: Seurat object stored in RDS file format. Three fresh tumor samples (respectively from INI254, INI255 and INI267) were prepared and loaded in 10x Chromium instrument (10x Genomics). Libraries were prepared using a Single Cell 3’ Reagent Kit (V2 chemistry, 10X Genomics) and sequenced on an Illumina HiSeq2500 using paired-end 26x98 bp as sequencing mode, targeting at least 50 000 reads par cell. Mapping and UMI counting per gene were performed using cellranger tool (version 3.1.0) and the hg19 reference genome version. Cells with both a low number of genes and a high proportion of mitochondrial RNA were discarded. The threshold of the minimum number of detected genes was set as the 5th percentile of the distribution of the number of detected genes in all cells while the maximum proportion of mitochondrial genes were set by visual inspection of the plot of the number of detected genes versus the percentage of mitochondrial gene of each sample. scRNA-seq data integration was performed using the CCA-based implemented in Seurat version 3. The clustering was conducted using the graph-based modularity optimization Louvain algorithm implemented in Seurat v3. The resolution 0.2 (integrated_snn_res.0.2) was choosen for the final result.
DOI: 10.15468/dl.btgksb
title: Occurrence Download

description: A dataset containing 6083 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Seed Collection of Crops and Crops’ Wild Relatives (CWRs) of Armenia"
 ]
}

 The dataset includes 6083 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026077-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvbwa3
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argis lar (Owen, 1839)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 425 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026079-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60952/286a-ks69
title: Odtwarzanie tkanki chrzęstnej po 6 tygodniach od przeszczepienia syngenicznych chondrocytów nasadowych bez zastosowania środka immunosupresyjnego

description: Materiał powstał w wyniku badania, celem którego było uzyskanie odpowiedzi, czy zastosowanie silnej krótkotrwałej immunosupresji zapobiegnie procesowi uczulenia biorcy, umożliwiając przeszczepionym allogenicznym lub syngenicznym chondrocytom odtworzenie macierzy, która przejęłaby funkcje ochronne po ustaniu działania środka immunosupresyjnego. Do badań użyto myszy wsobnego szczepu CFW/L1. Dawcami chondrocytów były 5- cio dniowe noworodki obu płci, biorcami zaś, dorosłe samce w wieku od 3 do 4 miesięcy. W badaniach w układzie allogenicznym biorcami przeszczepów były dorosłe samice szczepu wsobnego C57B1/10 w wieku od 3 do 4 miesięcy. W kontrolnych grupach syngenicznych chondrocyty nasadowe i żebrowe uzyskiwano od 5- dniowych samic C57B1/10. Do produkcji surowicy antytymocytarnej użyto królików rasy nowozelandzkiej białej o wadze 3,5 kg. Dawcami tymocytów i erytrocytów były niewsobne myszy szczepu Swiss. Na zdjęciu tkanka kostna utworzona w obrębie chrząstki odtworzonej przez syngeniczne chondrocyty nasadowe 6 tygodni po ich przeszczepieniu biorcy nie traktowanemu środkiem immunosupresyjnym. Tkanka chrzęstna /strzałki/ tworzy już tylko niewielkie skupiska. Dominuje tkanka kostna/K/ tworząca "kosteczkę". Pomiędzy beleczkami kostnymi występuje dojrzały szpik/S/. Barwienie HiE, powiększenie ok. 400x. Dokumentacja zdjęciowa powstała przy użyciu mikroskopu świetlnego, na kliszy fotograficznej (pracownia fotograficzna Instytutu Biostruktury Akademii Medycznej w Warszawie).