cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21586827
title: Inhibitory input directs astrocyte morphogenesis through glial GABABR

description: RNA-Seq datasets from developing astrocytes and transcription factor mutants
DOI: 10.6084/m9.figshare.21586827.v1
title: Inhibitory input directs astrocyte morphogenesis through glial GABABR

description: RNA-Seq datasets from developing astrocytes and transcription factor mutants
DOI: 10.6084/m9.figshare.22009703
title: Mechanisms of circadian clock timing and entrainment revealed by the structure of Cryptochrome bound to Timeless

description: Gel scans for SWIFTI binding experiments and mass-spectrometry data for DSSO cross-linking of the CRY:TIM complex
DOI: 10.6084/m9.figshare.22009703.v1
title: Mechanisms of circadian clock timing and entrainment revealed by the structure of Cryptochrome bound to Timeless

description: Gel scans for SWIFTI binding experiments and mass-spectrometry data for DSSO cross-linking of the CRY:TIM complex
DOI: 10.6084/m9.figshare.21321018
title: Adeno-associated virus 2 infection in children with non-A-E hepatitis

description: Extended datasets for PCR, serology and NGS experiments
DOI: 10.6084/m9.figshare.21321018.v1
title: Adeno-associated virus 2 infection in children with non-A-E hepatitis

description: Extended datasets for PCR, serology and NGS experiments
DOI: 10.5281/zenodo.10216024
title: supporting information
DOI: 10.5281/zenodo.10216023
title: supporting information
DOI: 10.6084/m9.figshare.24004092.v1
title: Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts

description: Two code pipelines were used to generate the results:\ phage-protein-modularity-data and phage-protein-modularity-figures. The first pipeline processes NCBI RefSeq data and carries out HMM profile construction, all-by-all HMM comparison and HMM-HMM comparison to PHROGs and ECOD databases. The second pipeline takes the output of the first pipeline as input and generates all outputs and figures presented in the publication. Both pipelines are available under the following Github releases: 1. https://github.com/bioinf-mcb/phage-protein-modularity-data/releases/tag/v1.0 2. https://github.com/bioinf-mcb/phage-protein-modularity-figures \end{itemize}
DOI: 10.6084/m9.figshare.24004092
title: Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts

description: Two code pipelines were used to generate the results:\ phage-protein-modularity-data and phage-protein-modularity-figures. The first pipeline processes NCBI RefSeq data and carries out HMM profile construction, all-by-all HMM comparison and HMM-HMM comparison to PHROGs and ECOD databases. The second pipeline takes the output of the first pipeline as input and generates all outputs and figures presented in the publication. Both pipelines are available under the following Github releases: 1. https://github.com/bioinf-mcb/phage-protein-modularity-data/releases/tag/v1.0 2. https://github.com/bioinf-mcb/phage-protein-modularity-figures \end{itemize}
DOI: 10.6084/m9.figshare.22589641.v1
title: INPP5D/SHIP1 regulates inflammasome activation in human microglia

description: Description of data tables are found in the Inventory of Supporting Information
DOI: 10.6084/m9.figshare.22589641
title: INPP5D/SHIP1 regulates inflammasome activation in human microglia

description: Description of data tables are found in the Inventory of Supporting Information
DOI: 10.6084/m9.figshare.23800698.v1
title: Adults on Pre-Exposure Prophylaxis (tenofovir-emtricitabine) Have Faster Clearance of Anti-HIV Monoclonal Antibody VRC01

description: Code and data used to analyze the popPK models for the manuscript titled "Adults on Pre-Exposure Prophylaxis (tenofovir-emtricitabine) Have Faster Clearance of Anti-HIV Monoclonal Antibody VRC01."
DOI: 10.6084/m9.figshare.23800698
title: Adults on Pre-Exposure Prophylaxis (tenofovir-emtricitabine) Have Faster Clearance of Anti-HIV Monoclonal Antibody VRC01

description: Code and data used to analyze the popPK models for the manuscript titled "Adults on Pre-Exposure Prophylaxis (tenofovir-emtricitabine) Have Faster Clearance of Anti-HIV Monoclonal Antibody VRC01."
DOI: 10.6084/m9.figshare.24291160.v1
title: Plasma proteomic profiles predict individual future health risk

description: Data used to generate plots in the manuscripts
DOI: 10.6084/m9.figshare.24291160
title: Plasma proteomic profiles predict individual future health risk

description: Data used to generate plots in the manuscripts
DOI: 10.5281/zenodo.3824500
title: demarez/DATA: Release PHYSINDIEN data

description: some data to be shared
DOI: 10.5281/zenodo.10046576
title: Replication Package for "Compatibility Issues in Deep Learning Systems: Problems and Opportunities"

description: This dataset contains scripts and data used to generate relevant results for this paper. Detailed information and procedure to reproduce our results are described in README.md. 


code


This folder contains two Python scripts: soextractor.py is used to extract 3,072 high-quality StackOverflow (SO) posts and soextractor_tags.py is used to extract the number of posts for the tags on SO. For detailed data collection criteria, please refer to Section 3.1 of our paper.


DL compatibility issues.xlsx


This file provides all the collected 3,072 issues, in which each line indicates whether the issue is a DL compatibility issue. Among them, 352 are DL compatibility issues. We also provide information on the library, stage, symptom, type, solution, root cause, and exception type for the DL compatibility issues. For the type CORE-TPL, we also provide backward-incompatible or forward-incompatible as well as API evolution patterns. For detailed manual classification of DL compatibility issues, please refer to Section 3.2 of our paper.


Tool Survey.xlsx 


This file includes all the papers collected from the three top SE conferences (i.e., ICSE, FSE, and ASE) in recent five years (18-22). Each line of each sheet provides the following information: (a) Title, (b) Year, (c) Conference, and (d) Type. For the detailed paper collection procedure, please refer to Section 5 of our paper.
DOI: 10.5281/zenodo.8207011
title: Replication Package for "Compatibility Issues in Deep Learning Systems: Problems and Opportunities"

description: This dataset contains scripts and data used to generate relevant results for this paper. Detailed information and procedure to reproduce our results are described in README.md. 


code


This folder contains two Python scripts: soextractor.py is used to extract 3,072 high-quality StackOverflow (SO) posts and soextractor_tags.py is used to extract the number of posts for the tags on SO. For detailed data collection criteria, please refer to Section 3.1 of our paper.


DL compatibility issues.xlsx


This file provides all the collected 3,072 issues, in which each line indicates whether the issue is a DL compatibility issue. Among them, 352 are DL compatibility issues. We also provide information on the library, stage, symptom, type, solution, root cause, and exception type for the DL compatibility issues. For the type CORE-TPL, we also provide backward-incompatible or forward-incompatible as well as API evolution patterns. For detailed manual classification of DL compatibility issues, please refer to Section 3.2 of our paper.


Tool Survey.xlsx 


This file includes all the papers collected from the three top SE conferences (i.e., ICSE, FSE, and ASE) in recent five years (18-22). Each line of each sheet provides the following information: (a) Title, (b) Year, (c) Conference, and (d) Type. For the detailed paper collection procedure, please refer to Section 5 of our paper.
DOI: 10.34740/kaggle/dsv/7080669
title: Egypt Gold Prices | Daily Updated
DOI: 10.48341/ezwd-t608
title: Isotopic Data from the LabStudy
DOI: 10.48341/nrwy-pd16
title: Isotopic Data from the FieldStudy: Chironomids sustain dietary quality via fatty acid regulation regardless of trophic state or dissolved organic carbon
DOI: 10.5281/zenodo.10052286
title: Artifact for "Efficient Construction of Practical Python Call Graphs with Entity Knowledge Base"

description: This is the artifact for the paper entitled "Efficient Construction of Practical Python Call Graphs with Entity Knowledge Base"
DOI: 10.5281/zenodo.10052285
title: Artifact for "Efficient Construction of Practical Python Call Graphs with Entity Knowledge Base"

description: This is the artifact for the paper entitled "Efficient Construction of Practical Python Call Graphs with Entity Knowledge Base"
DOI: 10.6084/m9.figshare.24619539
title: Supplementary Material for: Fertility-sparing surgery in infiltrative Mucinous Carcinoma of the Ovary: A case report

description: Mucinous ovarian carcinoma is often diagnosed early and can affect young patients. The preservation of the female reproductive organ is one of the critical issues, especially for nulliparous women. This case report aims to reconsider the safe outcome of fertility-sparing surgery for infiltrative-type mucinous ovarian carcinoma. A 28-year-old woman with a right mucinous ovarian carcinoma, infiltrative subtype stage IA, was treated by right salpingo-oophorectomy, omentectomy, and lymph node staging. A 5-year follow-up showed no signs of relapse, and she completed Two full-term natural pregnancies. Conservative surgery is a crucial matter for this patient category. The infiltrative type has a poorer prognosis, but few papers have reported the outcome and the safety of fertility-sparing surgery (FSS) in this context.
DOI: 10.6084/m9.figshare.24619539.v1
title: Supplementary Material for: Fertility-sparing surgery in infiltrative Mucinous Carcinoma of the Ovary: A case report

description: Mucinous ovarian carcinoma is often diagnosed early and can affect young patients. The preservation of the female reproductive organ is one of the critical issues, especially for nulliparous women. This case report aims to reconsider the safe outcome of fertility-sparing surgery for infiltrative-type mucinous ovarian carcinoma. A 28-year-old woman with a right mucinous ovarian carcinoma, infiltrative subtype stage IA, was treated by right salpingo-oophorectomy, omentectomy, and lymph node staging. A 5-year follow-up showed no signs of relapse, and she completed Two full-term natural pregnancies. Conservative surgery is a crucial matter for this patient category. The infiltrative type has a poorer prognosis, but few papers have reported the outcome and the safety of fertility-sparing surgery (FSS) in this context.
DOI: 10.21943/auas.14473146
title: Data mining in MRO raak mkb.zip

description: data, reports, etc.
DOI: 10.21943/auas.14473146.v1
title: Data mining in MRO raak mkb.zip

description: data, reports, etc.
DOI: 10.34740/kaggle/dsv/7080289
title: Survey about current Instability in Pakistan
DOI: 10.21943/auas.14473065
title: Figshare raak pro SMS Aviation.zip

description: also includes company reports, and other confidential documents regarding data.
DOI: 10.21943/auas.14473065.v1
title: Figshare raak pro SMS Aviation.zip

description: also includes company reports, and other confidential documents regarding data.
DOI: 10.21335/nmdc-nersc-1247352671
title: UNDERICE: Ambient noise in water _ 08/09/2014-06/03/2016

description: This dataset is based on acoustic recordings from five moorings deployed during the UNDER-ICE experiment in the Fram Strait. The UI1 mooring carried 8 hydrophones: HM501 (467m), HM502 (476m), HM504 (494m), HM505 (503m), HM506 (512m), HM507 (521m), HM509 (530m), HM310 (539m). A total of 8188 recordings were obtained from each hydrophone every 3 hours from Sep 2014 - Jan 2016. The UI2 mooring carried 10 hydrophones: HM511 (336m), HM512 (327m), HM513 (318m), HM514 (309m), HM515 (300m), HM516 (291m), HM517 (282m), HM518 (273m), HM519 (264m), HM320 (255m). A total of 4358 recordings were obtained from each hydrophone every 3 hours from Sep 2014 - Jan 2016. The UI3 mooring carried 10 hydrophones: HM521 (317m), HM522 (308m), HM523 (299m), HM524 (290m), HM525 (281m), HM526 (272m), HM527 (263m), HM528 (254m), HM529 (245m), HM330 (236m). A total of 8188 recordings were obtained from each hydrophone every 3 hours from Sep 2014 - Jan 2016. The UI4 mooring carried 10 hydrophones: HM531 (313m), HM532 (304m), HM533 (295m), HM534 (286m), HM535 (277m), HM536 (268m), HM537 (259m), HM538 (250m), HM539 (241m), HM340 (232). A total of 8189 recordings were obtained from each hydrophone every 3 hours from Sep 2014 - Jan 2016. The UI5 mooring carried 9 hydrophones: HM542 (565m), HM543 (556m), HM544 (547m), HM545 (538m), HM546 (529m), HM547 (520m), HM548 (511m), HM549 (502m), HM550 (493m). A total of 4359 recordings were obtained from each hydrophone every 3 hours from Sep 2014 - Mar 2016. Each acoustic recording covered 130 s with sampling rate 1000Hz. 10-, 50- and 90- percentiles of sound pressure and power were calculated for each reception using 50 % overlapping Hanning window with a window length of 1024 samples. The units for sound pressure is Pa. The unit for power (ocean sound level) is dB re uPa2 Hz-1. Noise by cable strumming is included. The processing is described in Geyer et al. 2021 https://doi.org/10.1121/2.0001507.
DOI: 10.5281/zenodo.10215767
title: NGI SARGASSO_Deliverable3.3

description: The deliverable 3.3 is the dataset of the beneficiaries of OC1.
DOI: 10.5281/zenodo.10215768
title: NGI SARGASSO_Deliverable3.3

description: The deliverable 3.3 is the dataset of the beneficiaries of OC1.
DOI: 10.25403/upresearchdata.24569803
title: Analysis of the relationship between job crafting, support and subjective career success

description: This dataset present the study findings which suggests that employees’ subjective career success may be influenced and predicted by internal and external elements of support as well as job crafting. It is therefore imperative that organisations create a culture that encourages job crafting and promotes family-supportive supervisor behaviour amongst their management team. a cross-sectional survey design to collect data from a sample of dual-earner employees (N = 263). By utilising a convenience and snowball sampling strategy. The data was collected using a cross-sectional survey design from a sample of dual-earner employees (N = 263). Utilising a convenience and snowball sampling strategy, the research questionnaires were administered via the online survey tool Qualtrics. Statistical analyses were conducted by means of SPSS and the Lavaan package of RStudio.
DOI: 10.25403/upresearchdata.24569803.v1
title: Analysis of the relationship between job crafting, support and subjective career success

description: This dataset present the study findings which suggests that employees’ subjective career success may be influenced and predicted by internal and external elements of support as well as job crafting. It is therefore imperative that organisations create a culture that encourages job crafting and promotes family-supportive supervisor behaviour amongst their management team. a cross-sectional survey design to collect data from a sample of dual-earner employees (N = 263). By utilising a convenience and snowball sampling strategy. The data was collected using a cross-sectional survey design from a sample of dual-earner employees (N = 263). Utilising a convenience and snowball sampling strategy, the research questionnaires were administered via the online survey tool Qualtrics. Statistical analyses were conducted by means of SPSS and the Lavaan package of RStudio.
DOI: 10.25625/h5juzg/heyflk
title: graph_all_channels.gt.gz
DOI: 10.25625/h5juzg/rce91l
title: graph_all_channels_weighted.gt.gz
DOI: 10.25625/h5juzg/txoqpc
title: graph_dl_channels.gt.gz
DOI: 10.25625/h5juzg
title: Telegram graph data of COVID-19 related channels

description: Telegram graph data of COVID-19 related channels Dataset of 128.148 Telegram channels/groups connected by 320.194.154 forwarded messages. Only vertices and edges are present with a limited amount of metadata. No message content is included. We include one files for the graph "graph.gt.gz" which includes the weighted directed graph. The weights can be found as edge properties. The file are in the gt format.
DOI: 10.25625/h5juzg/og8g7s
title: graph.gt.gz
DOI: 10.25625/h5juzg/pdtbia
title: graph_dl_channels_weighted.gt.gz
DOI: 10.4121/0674f9a4-9803-41c1-9cb5-62f1ef0a2a25
title: Data underlying the paper: Thermodynamics and kinetics of moisture transport in bitumen

description: Dynamic vapor sorption measurements of different bituminous binders. Testing temperatures range from 10 to 55 C. The utilized relative humidity is 80% or ranges from 0 to 100% with a step of 10%. For more details, please see README.txt as attached.
DOI: 10.4121/0674f9a4-9803-41c1-9cb5-62f1ef0a2a25.v1
title: Data underlying the paper: Thermodynamics and kinetics of moisture transport in bitumen

description: Dynamic vapor sorption measurements of different bituminous binders. Testing temperatures range from 10 to 55 C. The utilized relative humidity is 80% or ranges from 0 to 100% with a step of 10%. For more details, please see README.txt as attached.
DOI: 10.34740/kaggle/dsv/7080819
title: Health Workforce Shortage Areas
DOI: 10.34740/kaggle/dsv/7080831
title: AutoXGB
DOI: 10.34740/kaggle/dsv/7080833
title: OnlineFree
DOI: 10.4121/eb605dcf-b0b6-4fb6-b6ab-9c4cdc5536f5
title: Data underlying the Chapter 5 of the thesis: Interactions of moisture and oxidative ageing mechanisms in paving binders: towards improving durability of pavements

description: Dynamic vapor sorption measurements of different aged bituminous binders. Testing temperatures range from 25 to 55 C, and relative humidity is 80%. For details, please see README.txt file.
DOI: 10.5281/zenodo.10124661
title: Data for: A complete search of combinatorial peptide library greatly benefited from probabilistic incorporation of prior knowledge

description: The dataset contains source data for the analyses performed in the article "A complete search of combinatorial peptide library greatly benefited from probabilistic incorporation of prior knowledge". For a detailed description, read the document "Supplementary-material.pdf" in the "Metadata" folder.
DOI: 10.5281/zenodo.10124662
title: Data for: A complete search of combinatorial peptide library greatly benefited from probabilistic incorporation of prior knowledge

description: The dataset contains source data for the analyses performed in the article "A complete search of combinatorial peptide library greatly benefited from probabilistic incorporation of prior knowledge". For a detailed description, read the document "Supplementary-material.pdf" in the "Metadata" folder.
DOI: 10.4121/eb605dcf-b0b6-4fb6-b6ab-9c4cdc5536f5.v1
title: Data underlying the Chapter 5 of the thesis: Interactions of moisture and oxidative ageing mechanisms in paving binders: towards improving durability of pavements

description: Dynamic vapor sorption measurements of different aged bituminous binders. Testing temperatures range from 25 to 55 C, and relative humidity is 80%. For details, please see README.txt file.
DOI: 10.18465/4cc8c0c7-a831-4477-9ec3-bee3542d320c
title: MNS Saint-Nazaire 2022

description: Modèle Numérique de Surface obtenu par LiDAR sur la côte ligérienne au niveau de Saint-Nazaire
DOI: 10.4121/c8a3834b-0083-4748-bb6d-04f41bf68406
title: Rheological data underlying the Chapter 4 and 6 of the thesis: Interactions of moisture and oxidative ageing mechanisms in paving binders: towards improving durability of pavements

description: Rheological measurements (including frequency sweep, LAS fatigue tests, relaxation tests, and viscosity determined by DSR and Viscometer) of bituminous binders at different ageing states, various moisture conditions, and field conditions. For details, please see README.txt file.
DOI: 10.4121/c8a3834b-0083-4748-bb6d-04f41bf68406.v1
title: Rheological data underlying the Chapter 4 and 6 of the thesis: Interactions of moisture and oxidative ageing mechanisms in paving binders: towards improving durability of pavements

description: Rheological measurements (including frequency sweep, LAS fatigue tests, relaxation tests, and viscosity determined by DSR and Viscometer) of bituminous binders at different ageing states, various moisture conditions, and field conditions. For details, please see README.txt file.
DOI: 10.5281/zenodo.10124756
title: Data for: Evaluation of an integrative Bayesian peptide detection approach on a combinatorial peptide library

description: The dataset contains source data for the analyses performed in the article "Evaluation of an integrative Bayesian peptide detection approach on a combinatorial peptide library". For a detailed description, read the document "Supplementary-material.pdf" in the "Metadata" folder.
DOI: 10.5281/zenodo.10124755
title: Data for: Evaluation of an integrative Bayesian peptide detection approach on a combinatorial peptide library

description: The dataset contains source data for the analyses performed in the article "Evaluation of an integrative Bayesian peptide detection approach on a combinatorial peptide library". For a detailed description, read the document "Supplementary-material.pdf" in the "Metadata" folder.
DOI: 10.4121/43def7b8-a07d-4718-a1e5-2d4dab7af2c8
title: Physicochemical data underlying the Chapters 4 and 6 of the thesis: Interactions of moisture and oxidative ageing mechanisms in paving binders: towards improving durability of pavements

description: Fourier-transform infrared spectroscopy (FTIR), differential scanning calorimetry (DSC), and gel permeation chromatography (GPC) measurements of bituminous binders from different sources and at different ageing states. For details, please see README.txt file as attached.
DOI: 10.4121/43def7b8-a07d-4718-a1e5-2d4dab7af2c8.v1
title: Physicochemical data underlying the Chapters 4 and 6 of the thesis: Interactions of moisture and oxidative ageing mechanisms in paving binders: towards improving durability of pavements

description: Fourier-transform infrared spectroscopy (FTIR), differential scanning calorimetry (DSC), and gel permeation chromatography (GPC) measurements of bituminous binders from different sources and at different ageing states. For details, please see README.txt file as attached.
DOI: 10.6084/m9.figshare.24624069
title: Supplementary Material for: Shikonin exerts an anti-leukemia effect against FLT3-ITD mutated acute myeloid leukemia cells via targeting FLT3 tyrosine kinase and its downstream pathways

description: Introduction: Acute myeloid leukemia (AML) with internal tandem duplication (ITD) mutations in Fms-like tyrosine kinase 3 (FLT3) has an unfavorable prognosis. Recently, using newly emerging inhibitors of FLT3 has led to improved outcomes of patients with FLT3-ITD mutations. However, drug resistance and relapse continue to be significant challenges in the treatment of patients with FLT3-ITD mutations. This study aimed to evaluate the anti-leukemic effects of shikonin (SHK) and its mechanisms of action against AML cells with FLT3-ITD mutations in vitro and in vivo. Methods: The CCK-8 assay was used to analyze cell viability, and flow cytometry was used to detect cell apoptosis and differentiation. Western blotting and real-time polymerase chain reaction (RT-PCR) were used to examine the expression of certain proteins and genes. Leukemia mouse model was created to evaluate the anti-leukemia effect of SHK against FLT3-ITD mutated leukemia in vivo. Results: After screening a series of leukemia cell lines, those with FLT3-ITD mutations were found to be more sensitive to SHK in terms of proliferation inhibition and apoptosis induction than those without FLT3-ITD mutations. SHK suppresses the expression and phosphorylation of FLT3 receptors and their downstream molecules. Inhibition of the NF-κB/miR-155 pathway is an important mechanism through which SHK kills FLT3-AML cells. Moreover, a low concentration of SHK promotes the differentiation of AML cells with FLT3-ITD mutations. Finally, SHK could significantly inhibit the growth of MV4-11 cells in leukemia bearing mice. Conclusion: The findings of this study indicate that SHK is a promising drug for the treatment of FLT3-ITD mutated AML.