cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wadmry
title: Occurrence Download

description: A dataset containing 12493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon montanus)"
 ]
}

 The dataset includes 12493 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015689-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.29400434
title: Supporting data for MAP2-mediated integrin dysregulation reprograms cancer cell plasticity to drive liver cancer cell transition to a mesenchymal and stemness state in hepatocellular carcinoma

description: Our aim is to delineate how MAP2-mediated integrin dysregulation reprograms cancer cell plasticity to drive liver cancer cell transition to a mesenchymal and stemness state in hepatocellular carcinoma. Flow cytometry datasets are adopted for detecting percentage of cell apoptosis and integrin expression levels in HCC cells after MAP2 gene manipulation by CRISPR knockout and overexpression. Immunofluorescence dataset includes IF staining images of integrins, YAP, F-actin and tubulin after MAP2 gene manipulation. Immunohistochemistry dataset demonstrates MAP2 expression in HCC patients liver samples comparing to adjacent normal liver tissues. Mice experiments include images and raw data of subcutaneous injection model of HCC cells after MAP2 gene manipulation, and mice model after MAP2 drug treatment. RNA-sequencing introduces three sequencing datasets of CD133-sorted HCC mice model, Prom1-DTA HCC mice model, and HCC cells after MAP2 gene manipulation. TUNEL staining dataset includes mice liver sessions after drug treatment stained with TUNEL and Ki67, indicating cell apoptosis and proliferative cells respectively. Western blot image datasets collate all immunoblotting images of antibody stainings after MAP2 gene manipulation in MHCC97L and PLC/PRF/5 cells.
DOI: 10.25442/hku.29400434.v1
title: Supporting data for MAP2-mediated integrin dysregulation reprograms cancer cell plasticity to drive liver cancer cell transition to a mesenchymal and stemness state in hepatocellular carcinoma

description: Our aim is to delineate how MAP2-mediated integrin dysregulation reprograms cancer cell plasticity to drive liver cancer cell transition to a mesenchymal and stemness state in hepatocellular carcinoma. Flow cytometry datasets are adopted for detecting percentage of cell apoptosis and integrin expression levels in HCC cells after MAP2 gene manipulation by CRISPR knockout and overexpression. Immunofluorescence dataset includes IF staining images of integrins, YAP, F-actin and tubulin after MAP2 gene manipulation. Immunohistochemistry dataset demonstrates MAP2 expression in HCC patients liver samples comparing to adjacent normal liver tissues. Mice experiments include images and raw data of subcutaneous injection model of HCC cells after MAP2 gene manipulation, and mice model after MAP2 drug treatment. RNA-sequencing introduces three sequencing datasets of CD133-sorted HCC mice model, Prom1-DTA HCC mice model, and HCC cells after MAP2 gene manipulation. TUNEL staining dataset includes mice liver sessions after drug treatment stained with TUNEL and Ki67, indicating cell apoptosis and proliferative cells respectively. Western blot image datasets collate all immunoblotting images of antibody stainings after MAP2 gene manipulation in MHCC97L and PLC/PRF/5 cells.
DOI: 10.15468/dl.zqbbsu
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cassia fistula",
 "Country is Antigua and Barbuda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015693-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7ztu4
title: Occurrence Download

description: A dataset containing 4684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mercurialis perennis",
 "Geometry POLYGON((-8.00174339329464 54.1998526673513, 0.202120938926891 54.1998526673513, 0.202120938926891 61.2628565887411, -8.00174339329464 61.2628565887411, -8.00174339329464 54.1998526673513))",
 "CoordinateUncertaintyInMeters is 0,101",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4684 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015690-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q39cu3
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum gypsaceum"
 ]
}

 The dataset includes 32 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015692-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ufps6
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coenonympha fettigii"
 ]
}

 The dataset includes 35 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015694-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2d8sj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAE5327"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015695-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4thtj
title: Occurrence Download

description: A dataset containing 1268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capra hircus",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1268 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015696-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15775057
title: Dataset for "Integrated high resolution cell atlas of healthy human midbrain dopaminergic neurons"

description: Reference dataset of healthy midbrain DA neurons obtained by integration of snRNA-sequences data from Kamath et al., Nature Neuroscience (2022) and Siletti et al., Science (2023).

 

 
description: Construction of the reference

The Kamath dataset was first subset to only its control DA neurons, as the Siletti dataset contains only nuclei from the healthy human midbrain. In order to generate a balanced reference, nuclei from Kamath were randomly downsampled proportionally to cluster size before being combined with the full extent of Siletti nuclei, since the Kamath dataset is still an order of magnitude larger after the subset to healthy DA neurons.

The obtained combination file was subset to conserve the intersection of transcript names present in both the Kamath and Siletti datasets. For feature selection, the Cytograph FeatureSelectionByVariance function was used in both the Kamath and Siletti datasets separately to obtain 2,000 genes. The union of both gene sets was used as the highly variable genes (HVGs) of our dataset in all downstream analysis. Afterwards, principal component (PC) correction was performed with the Cytograph implementation of the Harmony algorithm (using the harmonypy Python package). Manual annotation of the obtained clusters was performed in combination of Cytograph feature enrichment genes and previously established DA subtype markers.
DOI: 10.5281/zenodo.15775058
title: Dataset for "Integrated high resolution cell atlas of healthy human midbrain dopaminergic neurons"

description: Reference dataset of healthy midbrain DA neurons obtained by integration of snRNA-sequences data from Kamath et al., Nature Neuroscience (2022) and Siletti et al., Science (2023).

 

 
description: Construction of the reference

The Kamath dataset was first subset to only its control DA neurons, as the Siletti dataset contains only nuclei from the healthy human midbrain. In order to generate a balanced reference, nuclei from Kamath were randomly downsampled proportionally to cluster size before being combined with the full extent of Siletti nuclei, since the Kamath dataset is still an order of magnitude larger after the subset to healthy DA neurons.

The obtained combination file was subset to conserve the intersection of transcript names present in both the Kamath and Siletti datasets. For feature selection, the Cytograph FeatureSelectionByVariance function was used in both the Kamath and Siletti datasets separately to obtain 2,000 genes. The union of both gene sets was used as the highly variable genes (HVGs) of our dataset in all downstream analysis. Afterwards, principal component (PC) correction was performed with the Cytograph implementation of the Harmony algorithm (using the harmonypy Python package). Manual annotation of the obtained clusters was performed in combination of Cytograph feature enrichment genes and previously established DA subtype markers.
DOI: 10.15468/dl.ftt5bu
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capra hircus",
 "Country is Saint Kitts and Nevis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015697-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rszm4s
title: Occurrence Download

description: A dataset containing 1105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon neomexicanus)"
 ]
}

 The dataset includes 1105 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015698-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.styvzs
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Matthiola czerniakowskae"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015699-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2wuzv
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capra hircus",
 "Country is United Arab Emirates",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015701-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12472982
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.qm6rm2
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cassia fistula",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 320 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015702-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xctjcc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAE5326"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015703-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bz6jp4
title: Occurrence Download

description: A dataset containing 378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Trifolium parryi",
 "Year 2019-2023"
 ]
}

 The dataset includes 378 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015704-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.keq9vu
title: Occurrence Download

description: A dataset containing 2381 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capra hircus",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2381 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015705-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.respm8
title: Occurrence Download

description: A dataset containing 1162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon nettingi)"
 ]
}

 The dataset includes 1162 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015706-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kaa7fp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Saposhnikovia divaricata",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015674-250711103210423/datasets/export for details.
DOI: 10.15468/dl.99vfr7
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium virginicum tepicense"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015707-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g56cqq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capra hircus",
 "Country is Vanuatu",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015709-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ymbgz
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum gladiiferum"
 ]
}

 The dataset includes 44 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015710-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysv9h3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chitoniscus sarrameaensis"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015708-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8cy5m
title: Occurrence Download

description: A dataset containing 511 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megaleporinus obtusidens"
 ]
}

 The dataset includes 511 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015712-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mmxpt
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cassia fistula",
 "Country is Barbados",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015711-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29567339
title: Hatchery debris analysis

description: this biological trial was conducted with native chicken population at Department of Poultry Science, Veterinary College and Research Institute, Namakkal for a period of 52 weeks. This explains how the fertility and hatchability of native chicken were influenced by age and body weight of the parent birds. This hatchery debris was analysed for about 25 weeks period from 27 to 52nd week of age. It was concluded that other than 3-5 days and middle mortality, all hatchability parameters were influence by age and body weight of parents.
DOI: 10.6084/m9.figshare.29567339.v1
title: Hatchery debris analysis

description: this biological trial was conducted with native chicken population at Department of Poultry Science, Veterinary College and Research Institute, Namakkal for a period of 52 weeks. This explains how the fertility and hatchability of native chicken were influenced by age and body weight of the parent birds. This hatchery debris was analysed for about 25 weeks period from 27 to 52nd week of age. It was concluded that other than 3-5 days and middle mortality, all hatchability parameters were influence by age and body weight of parents.
DOI: 10.15468/dl.a9ah5d
title: Occurrence Download

description: A dataset containing 337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon ocmulgee)"
 ]
}

 The dataset includes 337 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015713-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4cfbf
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capra hircus",
 "Country is Venezuela (Bolivarian Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015714-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rmne4
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba senilis"
 ]
}

 The dataset includes 35 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015715-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abxat4
title: Occurrence Download

description: A dataset containing 916 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leporinus obtusidens"
 ]
}

 The dataset includes 916 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015716-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3camfn
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cassia fistula",
 "Country is Belize",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015717-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qznp5d
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cassia fistula",
 "Country is Brunei Darussalam",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015718-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nv2e6t
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ricania speculum"
 ]
}

 The dataset's 2 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015700-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvtfjf
title: Occurrence Download

description: A dataset containing 4134 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Symphyotrichum expansum"
 ]
}

 The dataset includes 4134 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015719-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5xasd
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isatis floribunda"
 ]
}

 The dataset includes 40 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015724-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tthb5a
title: Occurrence Download

description: A dataset containing 21800 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mollugo verticillata"
 ]
}

 The dataset includes 21800 records from 614 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015721-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.