cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30948486
title: Quantitative determination of sweet orange, lime, and grapefruit essential oil adulterants in lemon essential oil <i>(Citrus limon L.)</i> using attenuated total reflectance fourier transform infrared spectroscopy and chemometrics

description: The high market value of certain essential oils (EOs), such as lemon essential oil (LEO), makes them particularly susceptible to adulteration. Such adulteration typically involves the intentional addition of low-value EOs. In this study, we mixed LEO and sweet orange essential oil (SOEO), lime essential oil (LiEO), and grapefruit essential oil (GEO) at varying concentrations. We then used Attenuated Total Reflectance – Fourier Transform Infrared Spectroscopy (ATR-FTIR), and principal component regression (PCR), partial least squares regression (PLS), and artificial neural network (ANN) chemometrics to quantify adulteration in the samples. The ANN models produce the best accuracy, however it is computationally expensive and not practical. We further demonstrate that PLS using the 2000–1000 cm<sup>−1</sup>, ATR-FTIR spectral region produces good accuracy in predicting % v/v LEO, SOEO, LiEO, and GEO in the samples.
DOI: 10.6084/m9.figshare.30948486.v1
title: Quantitative determination of sweet orange, lime, and grapefruit essential oil adulterants in lemon essential oil <i>(Citrus limon L.)</i> using attenuated total reflectance fourier transform infrared spectroscopy and chemometrics

description: The high market value of certain essential oils (EOs), such as lemon essential oil (LEO), makes them particularly susceptible to adulteration. Such adulteration typically involves the intentional addition of low-value EOs. In this study, we mixed LEO and sweet orange essential oil (SOEO), lime essential oil (LiEO), and grapefruit essential oil (GEO) at varying concentrations. We then used Attenuated Total Reflectance – Fourier Transform Infrared Spectroscopy (ATR-FTIR), and principal component regression (PCR), partial least squares regression (PLS), and artificial neural network (ANN) chemometrics to quantify adulteration in the samples. The ANN models produce the best accuracy, however it is computationally expensive and not practical. We further demonstrate that PLS using the 2000–1000 cm<sup>−1</sup>, ATR-FTIR spectral region produces good accuracy in predicting % v/v LEO, SOEO, LiEO, and GEO in the samples.
DOI: 10.6084/m9.figshare.31173634
title: Gene expression data for SARS-CoV-2 infection of IBD intestinal organoids

description: Reduced SARS-CoV-2 infection levels and pathotype specific altered antiviral transcriptional response in IBD intestinal organoids.
DOI: 10.6084/m9.figshare.31173634.v1
title: Gene expression data for SARS-CoV-2 infection of IBD intestinal organoids

description: Reduced SARS-CoV-2 infection levels and pathotype specific altered antiviral transcriptional response in IBD intestinal organoids.
DOI: 10.5281/zenodo.18406363
title: Supplementary data for: Peasant Economies in Rural al-Andalus

description: This dataset provides supplementary material supporting the analysespresented in the article “Peasant Economies in Rural al-Andalus:Agriculture, Trade, and Social Tensions”. It includes summarizedarchaeological, chronological, and contextual data used in the study.
DOI: 10.5281/zenodo.18406362
title: Supplementary data for: Peasant Economies in Rural al-Andalus

description: This dataset provides supplementary material supporting the analysespresented in the article “Peasant Economies in Rural al-Andalus:Agriculture, Trade, and Social Tensions”. It includes summarizedarchaeological, chronological, and contextual data used in the study.
DOI: 10.5061/dryad.b5mkkwhmx
title: Doubts about the diagnosis and treatment of syphilis in pregnancy among primary care professionals in a telehealth service

description: This cross-sectional study aims to describe doubts regarding the diagnosis
 and treatment of syphilis in pregnancy among primary care professionals in
 a telehealth service. All teleconsultations (TCs) offered through
 TelessaúdeRS-UFRGS to primary health care (PHC) services in a state in
 southern Brazil involving syphilis in pregnancy were included. A total of
 356 (TCs) were analyzed.   The main doubts about syphilis during
 pregnancy raised by primary care professionals were related to the need
 for retreatment (35%), diagnostic definition (23%), and initial treatment
 (16%). In addition, 95% of TCs were suitable for diagnosing and treating
 syphilis based on the Brazilian Ministry of Health guidelines. This study
 suggests that TCs can identify failures in the diagnosis and treatment of
 public health problems and support decision-making in PHC involving
 syphilis in pregnancy.
description: Setting TelessaúdeRS-UFRGS is affiliated with
 the Federal University of Rio Grande do Sul (UFRGS) and funded by the
 Brazilian Ministry of Health. The telehealth program has already been
 detailed elsewhere. Briefly, the TC modality allows providers to discuss
 in real-time specific patient- or practice-related questions concerning
 all primary care issues, including infectious diseases. Once an answer has
 been prepared, the teleconsultant verbally provides the inquirer with a
 suggestion for management while also making a written record of the
 information on a text platform.
description: # Doubts about the diagnosis and treatment of syphilis in pregnancy among
 primary care professionals in a telehealth service ## Description of the
 data and file structure The study titled "Doubts about Diagnosis and
 Treatment of Syphilis in Pregnancy among Primary Care Professionals in a
 Telehealth Service" is a cross-sectional study that aims to describe
 doubts regarding the diagnosis and treatment of syphilis in pregnancy
 among primary care professionals in a telehealth service. A secondary
 study objective was to describe the diagnostic and treatment adequacy of
 teleconsultations (TCs) to the Brazilian Ministry of Health guideline for
 syphilis and the percentage of referrals to a specialist in patients with
 syphilis in pregnancy who were treated in primary health care (PHC) and
 supported by a telehealth service. The research analyzed 356
 teleconsultations (TCs) provided by TelessaúdeRS-UFRGS to primary health
 care (PHC) services in a State in southern Brazil, where syphilis in
 pregnancy was discussed. The study database is accessible on Dryad. The
 dataset includes all variables utilized to present the study. The
 "Data" folder comprises the data, while the
 "Dictionary" folder describes each variable used in the
 analysis. ## Sharing/Access information The variables included in this
 study were collected from the Rio Grande do Sul TelessaúdeRS-UFRGS
 database.  ## **Code/Software** None
DOI: 10.5061/dryad.fbg79cp3p
title: Concentrations of total phenolics and condensed tannins and the number of galls combined in each sample

description: Gall-forming insects induce various types of galls on their host plants by
 altering gene expression in host plant organs, and recent studies have
 been conducted for gene expression in galls. However, the evolutionary
 trajectories of gene expression patterns and the resulting phenotypes have
 not yet been studied using multiple related species. We investigated the
 speciation and the diversification process of galls induced by four
 closely-related aphid species (Hormaphidini) on a host plant species
 (Hamamelis japonica) by examining the phylogenetic congruence between the
 geographic divergences of aphids and the host plant, and by comparing
 their gene expression patterns and resulting phenotypes. Phylogenetic
 analysis of aphids and the host plant showed that geographic isolation
 among host plant populations has interrupted gene flow in aphids and
 accelerated the speciation process. The concentration of phenolics and the
 complexity of the internal structure of galls were correlated with the
 expression levels of genes for the biosynthesis of phenolics and
 morphogenesis, respectively. These results suggest that the expression
 levels of genes for the biosynthesis of phenolics and morphogenesis have
 evolutionarily increased in galls accelerated by the speciation process of
 aphids due to the distribution change of the host plant, leading to the
 related phenotypic evolution. Our study showed the evolutionary process of
 phenotypic traits in galls in the wild from both gene expression and
 actual phenotype levels.
description: # Title of Dataset Concentrations of total phenolics and condensed tannins
 and the number of galls combined in each sample. ## Description of the
 data and file structure variable name and description Growth stage -
 growth stage of each gall sample; "Leaf" means the leaf of
 Hamamelis japonica Species name - aphid species name of each gall sample
 Site No. - the number of the site where the sample was collected Total
 phenolics - concentration of total phenolics of each sample (mg/g)
 Condensed tannins - concentrations of condensed tannins of each sample
 (mg/g) No. of galls combined - the number of galls combined in each sample
DOI: 10.5061/dryad.hdr7sqvrq
title: Data from: Tireless travellers: Sea turtles swim continuously during long-distance movements

description: While rest and sleep are crucial to animals, our understanding of whether
 and how long-distance migrants rest has been thwarted by the inability to
 relay high-resolution data from multi-channel loggers via satellite. We
 overcame these obstacles for an iconic long-distance migrator by equipping
 five loggerhead sea turtles (Caretta caretta) with satellite tags and
 data-loggers providing depth and 3-D acceleration measurements. Turtles
 were translocated to open-sea locations and induced to complete oceanic
 migrations of tens of km to return to their nesting beach performing
 active, oriented movements. Across a total of &gt;600 hours of
 high-resolution data, we observed (i) constant flipper frequency (ca. 0.5
 Hz) indicating that turtles never ceased movement, (ii) intense subsurface
 swimming (mostly around 1 m) for about 50% of time and (iii) deeper, less
 active dives up to 80 m, which were made day and night and more frequently
 in offshore waters. Flipper beat amplitude was much smaller in deep dives;
 hence the estimated energy expenditure was 37% lower on deep dives
 compared to subsurface swimming. These findings suggest that turtles,
 which can complete migrations of &gt;2000 km, alternate between phases
 of intense near-surface swimming and periods of lower activity at depth,
 without fully resting during migration.
description: # Tireless travellers: sea turtles swim continuously during long-distance
 movements
 [https://doi.org/10.5061/dryad.hdr7sqvrq](https://doi.org/10.5061/dryad.hdr7sqvrq) The 6 .csv files contain the data recorded by the loggers during the homing trip of the five turtles (turtle C, D, E, G and two homing phases of turtle F). The first column provides a progressive number for each recording, the second one is a time stamp. The third column contains successive depth readings obtained every second (acquisition frequency 1 Hz), while the remaining 3 columns provides values of the tri-axial dynamic acceleration, deriving from original acceleration recordings (acquisition frequency 10 Hz) that have been processed as described in the manuscript. These three columns contains the values of the dynamic acceleration along the X, Y and Z axis, respectively. The other file includes the 1-hr interpolated locations of the five tracked turtles (C-G, with two phases of turtle F), based on the original Argos localizations. For each turtle, the latitude and longitude values of the positions interpolated every 1 hour are provided (date/time reference given in the second column).
DOI: 10.5061/dryad.6hdr7sr82
title: Genetic testing limits the spread of inherited kidney disease while avoiding inbreeding in domestic cats

description: More than 56,000 genetic variants were evaluated in 81 domestic cats to
 clarify the genetic structure, genetic diversity, and effective population
 size at two time points: before genetic testing started (2019) and after
 genetic testing became popular (2022).
description: Scottish Folds and Persian cats were genotyped by using Infinium
 iSelect 63K Cat DNA Array (Illumina Inc.). 
description: # Genetic testing limits the spread of inherited kidney disease while
 avoiding inbreeding in domestic cats
 [https://doi.org/10.5061/dryad.6hdr7sr82](https://doi.org/10.5061/dryad.6hdr7sr82) The data format is a Plink bed, so you can use PLINK software ([https://www.cog-genomics.org/plink/](https://www.cog-genomics.org/plink/)) to handle the data easily. Quality control was performed using PLINK version 1.90 (Chang et al., 2015). Missing rates for each locus (geno option) and individual cats (mind option) were both &lt;5%. We did not examine the Hardy-Weinberg equilibrium, as we did not assume random mating for pedigreed cats. Population genetic analyses should not include close relatives (Manichaikul et al., 2010); therefore, we conducted robust relationship-based pruning using the king-cutoff option in PLINK version 2.00a2LM (threshold of 0.176) to exclude pairings between monozygotic twins and first-degree relatives. For allele frequency-based quality control, we excluded SNPs with a minor allele frequency &lt;0.01. Several software tools, such as PLINK, can be used to analyze the following datasets further. A text editor like EmEditor can be used to open .bim and .fam files. After converting the data to PED/MAP format using PLINK (with the command below), the contents of the .bed file can also be viewed with a text editor. Example: plink --bfile PER --allow-extra-chr --recode --chr-set 95 --out PER_ped **ScottishFold** PER.bed: : PLINK bed file PER.bim : PLINK bim file PER.fam : PLINK fam file **Persian** PER.bed: : PLINK bed file PER.bim : PLINK bim file PER.fam : PLINK fam file
DOI: 10.15468/s9hbbk
title: The cascudos of the genus Hypostomus Lacépède (Ostariophysi: Loricariidae) from the rio Iguaçu basin

description: This dataset contains the digitized treatments in Plazi based on the original journal article Garavello, Julio César, Britski, Heraldo Antônio, Zawadzki, Claudio Henrique (2012): The cascudos of the genus Hypostomus Lacépède (Ostariophysi: Loricariidae) from the rio Iguaçu basin. Neotropical Ichthyology 10 (2): 263-283, DOI: 10.1590/S1679-62252012000200005, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252012000200005&lng=en&tlng=enWe reviewed several large collections of the genus Hypostomus from the rio Iguaçu basin summing up to 793 specimens mainly from the Laboratório de Ictiologia do Departamento de Ecologia e Biologia Evolutiva from Universidade Federal de São Carlos, from fish collection of Núcleo de Pesquisas em Limnologia, Ictiologia e Aquicultura da Universidade Estadual de Maringá, and from the Museu de História Natural do Capão da Imbuia. Hypostomus albopunctatus, H. commersoni, H. derbyi, and H. myersi are redescribed and Hypostomus nigropunctatus is described as a new species. A practical key for identification of Hypostomus species from the rio Iguaçu is also provided.Foram revisadas extensivas coleções de peixes do gênero Hypostomus da bacia do rio Iguaçu, somando 793 exemplares, principalmente das seguintes coleções: Laboratório de Ictiologia do Departamento de Ecologia e Biologia Evolutiva da Universidade Federal de São Carlos, da coleção de peixes do Núcleo de Pesquisas em Limnologia, Ictiologia e Aquicultura da Universidade Estadual de Maringá e do Museu de História Natural do Capão da Imbuia. Hypostomus albopunctatus, H. commersoni, H. derbyi e H. myersi são redescritas e Hypostomus nigropunctatus é descrita como uma espécie nova. Uma chave artificial de identificação para as espécies do gênero Hypostomus do rio Iguaçu também é fornecida.
DOI: 10.5061/dryad.905qfttth
title: Data from: The brassinosteroid receptor gene BRI1 safeguards cell-autonomous brassinosteroid signaling across tissues

description: Brassinosteroid signaling is essential for plant growth as exemplified by
 the dwarf phenotype of loss-of-function mutants in BRASSINOSTEROID
 INSENSITIVE 1 (BRI1), a ubiquitously expressed Arabidopsis brassinosteroid
 receptor gene. Complementation of brassinosteroid-blind receptor mutants
 by BRI1 expression with various tissue-specific promoters implied that
 local brassinosteroid signaling may instruct growth non-cell-autonomously.
 Here we performed such rescues with a panel of receptor variants and
 promoters, in combination with tissue-specific transgene knockouts. Our
 experiments demonstrate that brassinosteroid receptor expression in
 several tissues is necessary but not sufficient for rescue. Moreover,
 complementation with tissue-specific promoters requires the genuine BRI1
 gene body sequence, which confers ubiquitous expression of trace receptor
 amounts that are sufficient to promote brassinosteroid-dependent root
 growth. Our data, therefore, argue for a largely cell-autonomous action of
 brassinosteroid receptors.
description: # The brassinosteroid receptor gene BRI1 safeguards cell-autonomous
 brassinosteroid signaling across tissues
 [https://doi.org/10.5061/dryad.905qfttth](https://doi.org/10.5061/dryad.905qfttth) Single cell RNA sequencing (scRNAseq) data obtained from root tips of different *Arabidopsis thaliana* genotypes were processed as described in the Materials and Methods to obtain gene expression quantifications. The code for processing the data is provided.  ## Description of the data and file structure An Excel file with five different sheets: Sheet 1 contains the legend for sheets 2 to 5. Sheet 2 contains the expression analyses of the *CVP2::BRI1-CITRINE* transgenic line as compared to wild type and *bri1 brl1 brl3* triple mutants. Sheet 3 contains an excerpt of Sheet 2, focussed on *BRI1-CITRINE* and *CVP2*. Sheet 4 contains the expression analyses of the *GL2::BRI1-GFP* transgenic line as compared to wild type and *bri1 brl1 brl3* triple mutants. Sheet 5 contains an excerpt of Sheet 4, focussed on *BRI1-GFP* and *GL2*. ## Sharing/Access information The Code is also available at at https://github.com/tmnolan/BR-Receptors The raw scRNA-seq data have been deposited at the NCBI GEO (https://www.ncbi.nlm.nih.gov/geo/) under accession GSE212230 ## Code/Software The Code provides the pipeline for scRNAseq data processing and analysis as described in detail in the Methods section of the paper.
DOI: 10.25934/pr00012563.0
title: Available datapackage for study 'LITE CONNECT: Addressing Testing Gaps and Epidemiologic Disparities of COVID-19 Among Transgender People in the United States'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5061/dryad.wpzgmsbwh
title: Superconducting diode effect under time reversal symmetry

description: In noncentrosymmetric superconductors, superconducting and normal
 conductions can interchange based on the current flow direction. This
 effect is termed a superconducting diode effect (SDE), which is a focal
 point of recent research. The broken inversion and time reversal symmetry
 is believed to be the requirements of SDE but their intrinsic role has
 remained elusive. Here, we report strain-controlled SDEs in a layered
 trigonal superconductor, PbTaSe2. The SDE was found exclusively in a
 strained device with its absence in an unstrained device, despite that it
 is allowed in unstrained trigonal structure. Moreover, the zero-field or
 magnetic field-even (magnetic field-odd) SDE is observed when the strain
 and current are along armchair (zigzag) direction The results
 unambiguously demonstrate the intrinsic SDE under time-reversal symmetry
 and the critical role of strain-induced electric polarization.
description: These data were obtained by measurement by sourcemeter and
 nanovoltmeter, and optical measurement. 
description: # Superconducting diode effect under time reversal symmetry
 [https://doi.org/10.5061/dryad.wpzgmsbwh](https://doi.org/10.5061/dryad.wpzgmsbwh) We have submitted our raw data for all the figures (**Liu_SDE_Data.xlsx**). ## Description of the data and file structure **Liu_SDE_Data.xlsx** Temp: Temperature dependence (K) Rxx: Longitudinal resistance (Ω) Voltage: 4 terminal probe voltage (V) Current: Flowing current value (A) SHG Data: Raw data of SHG measurement (arb. unit) Angle: Angle values of linearly polarized light (deg.) SHGFitting: Fitting results of SHG data (arb. unit) Field: Values of applied out-of-plane magnetic field (T) Critical current: Values of critical currents (A) DeltaI: Values of difference between positive and negative critical currents (A) DeltaIErrorbar: Errorbars of DeltaI (A) Null indicates the empty cell because the length of the data set containing null is shorter than other data sets.
DOI: 10.5281/zenodo.18406522
title: IQTISODIY TA'LIMDA O'ZBEK XALQ PEDAGOGIKASIDAN FOYDALANISHNING NAZARIY ASOSLARI

description: Mazkur maqolada iqtisodiy ta’lim jarayonida o‘zbek xalq pedagogikasidan foydalanishning nazariy asoslari tahlil qilinadi. Tadqiqotda iqtisodiy savodxonlik bilim, xulq-atvor va qadriyatlar birligi sifatida qaralib, uni shakllantirishda milliy pedagogik merosning o‘rni ilmiy jihatdan asoslab beriladi. Xalqaro iqtisodiy ta’lim yondashuvlari hamda o‘zbek xalq pedagogikasiga xos hayotiy va tarbiyaviy tamoyillar qiyosiy tahlil qilinadi. Tadqiqot natijalari iqtisodiy ta’limni real hayotiy tajriba va milliy qadriyatlar bilan uyg‘unlashtirish ta’lim samaradorligini oshirishini ko‘rsatadi. Maqolada iqtisodiy ta’lim mazmunini takomillashtirish va iqtisodiy xulq-atvorni shakllantirishga doir ilmiy xulosalar va amaliy tavsiyalar berilgan.
DOI: 10.5281/zenodo.18406521
title: IQTISODIY TA'LIMDA O'ZBEK XALQ PEDAGOGIKASIDAN FOYDALANISHNING NAZARIY ASOSLARI

description: Mazkur maqolada iqtisodiy ta’lim jarayonida o‘zbek xalq pedagogikasidan foydalanishning nazariy asoslari tahlil qilinadi. Tadqiqotda iqtisodiy savodxonlik bilim, xulq-atvor va qadriyatlar birligi sifatida qaralib, uni shakllantirishda milliy pedagogik merosning o‘rni ilmiy jihatdan asoslab beriladi. Xalqaro iqtisodiy ta’lim yondashuvlari hamda o‘zbek xalq pedagogikasiga xos hayotiy va tarbiyaviy tamoyillar qiyosiy tahlil qilinadi. Tadqiqot natijalari iqtisodiy ta’limni real hayotiy tajriba va milliy qadriyatlar bilan uyg‘unlashtirish ta’lim samaradorligini oshirishini ko‘rsatadi. Maqolada iqtisodiy ta’lim mazmunini takomillashtirish va iqtisodiy xulq-atvorni shakllantirishga doir ilmiy xulosalar va amaliy tavsiyalar berilgan.