cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/4j4gxf
title: Projet de création du parc photovoltaïque au sol d'Eguzon-Chantôme-Inventaire des mammifères

description: Inventaire des mammifères sur un cycle biologique complet
DOI: 10.6084/m9.figshare.13579032.v1
title: Additional file 4 of Horizontally acquired antibacterial genes associated with adaptive radiation of ladybird beetles

description: Additional file 4: Multiple sequence alignment of the ladybird cwh protein sequences.
DOI: 10.15468/377evb
title: Vidange du lac des Settons (58) et restauration du barrage - inventaire faune flore - données avifaune, mammifères, herpétofaune

description: relevé terrain 2020-2021 avifaune, mammifères, herpétofaune
DOI: 10.15468/3fu3p8
title: EDP Baixo Sabor: Reservoir Filling and Exploration Phase – Otter [2015-2020]

description: The dataset contains records of the Otter (Lutra lutra) collected in the lower valley of the River Sabor (NE Portugal), in the scope of the long-term Ecological Monitoring Program (EMP) and the Compensatory Measures Monitoring Program (CMMP) of the Baixo Sabor Hydroelectric Dams (AHBS), promoted by EDP – Energias de Portugal, S.A. This dataset includes results of surveys carried out inside and around the area affected by the dam, from April 2015 to July 2020. Sampling was performed in transects distributed along the lower Sabor river valley (including some tributaries), and along the rivers Maçãs and Angueira, up to 73 km upstream. The presence and identity of the target species were assessed through the presence of faeces (spraints) and/or footprints of the target species.
DOI: 10.15468/ymspp4
title: 2016_LPO PACA_2

description: 2016_LPO-PACA_mammiferes2:LPO PACA:Plan National d'Actions Loutre - Campagnol amphibie - Castor
DOI: 10.15468/kgtgbh
title: Aménagements Ferroviaires au Sud de Bordeaux (AFSB)-MAMMIFERES

description: MAMMIFERES / Le projet AFSB se situent sur les communes de Bègles, Villenave d’Ornon, Cadaujac et Saint-Médard-d’Eyrans en Gironde (33). Les AFSB consistent essentiellement à ajouter une voie à une infrastructure existante. Le tracé de cette voie nouvelle sera jumelé en « parallèle » aux voies existantes. La réalisation du projet nécessite des emprises au sein de milieux naturels, semi-naturels et urbains, dont la plupart sont des habitats nécessaires à l’accomplissement du cycle biologique d’espèces animales protégées. Se trouvant dans le champ d'expansion des crues de la Garonne et franchissant plusieurs cours d'eau, l'impact sur les eaux de surface est également un enjeu fort du projet. Enfin, traversant des zones densément peuplées, l'enjeu humain, notamment vis-à-vis des nuisances sonores, constitue aussi une composante majeure des études d'incidences.
DOI: 10.15470/xavass
title: Long-term monitoring of the relative density in the Eurasian otter (Lutra lutra) with track counts in Do?ana National Park 2007-2022

description: The long-term monitoring of carnivore tracks in Do?ana is part of a harmonised protocol for the Long-term Ecological Monitoring Program of Natural Resources and Processes targeting mammals' populations. The general aim of this protocol is to study the temporal evolution of the relative density of the main species of carnivores in the main habitats of the Do?ana National Park. Tracks surveys were done annually after the first rains of the hydrological year, i.e. the first autumn rains, usually in October. Due to climate change, in recent years the rainy season has been delayed until the beginning of the year. This protocol has stablished in 2007 and it has done annually until the present (2022), except in 2021 when due to logistical problems no census was made. Censuses are carried out through 12 prefixed transects, with sand substrate, in Do?ana National Park. Each transect consists of a 2 km of length and 1.5 m of width that is done by a car at a constant speed between 10 and 15 km/h. Transects are cleaned the day before of the census with a metal beam to facilitate the read of the tracks and to ensure that the foot prints were from the previous day. Each transect is repeated in three consecutive days, and during the transect the sand is cleaned for the next day. In the census an expert in mammals? tracks identifies all the tracks, i.e. groups of carnivore foot prints, and he/she records them in Cybertracker. That way, tracks' information like coordinates, hour, species identification and observation was recorded; and also the information of each transect was recorded: surveyors, drivers, date, start and end (hour and coordinates). This method enables to calculate Kilometric Abundance Indexes (KAI) for each species and transect. In order to clarify all carnivore datasets, the data was separated by species, this allows concrete analysis by species. In this dataset Eurasian otter?s (Lutra lutra) data is presented.
DOI: 10.5285/da8e669a74334c82a56e0b470bc4ef04
title: ESA Fire Climate Change Initiative (Fire_cci): Sentinel-3 SYN Burned Area Grid product, version 1.1

description: The ESA Fire Disturbance Climate Change Initiative (CCI) project has produced maps of global burned area derived from satellite observations. The Sentinel-3 SYN Fire_cci v1.1 grid product described here contains gridded data on global burned area derived from surface reflectance data from the OLCI and SLSTR instruments (combined as the Synergy (SYN) product) onboard the Sentinel-3 A&B satellites, complemented by VIIRS thermal information. This product, called FireCCIS311 for short, is available for the years 2019 to 2022.

This gridded dataset has been derived from the FireCCIS311 pixel product (also available) by summarising its burned area information into a regular grid covering the Earth at 0.25 x 0.25 degrees resolution and at monthly temporal resolution. Information on burned area is included in 22 individual quantities: sum of burned area, standard error, fraction of burnable area, fraction of observed area, and the burned area for 18 land cover classes, as defined by the Copernicus Climate Change Initiative (C3S) Land Cover v2.1.1 product. For further information on the product and its format see the Product User Guide in the linked documentation.
DOI: 10.6084/m9.figshare.21443353.v1
title: Additional file 2 of Personalized targeted therapy prescription in colorectal cancer using algorithmic analysis of RNA sequencing data

description: Supplementary Material 2
DOI: 10.15468/tgfkab
title: EDP Foz-Tua: Large and Medium-sized Mammals (transects): Complementary Studies [2010]

description: The dataset contains records of large and medium-sized mammals (Mammalia: Carnivora, Cetartiodactyla and Lagomorpha) collected in the lower valley of the River Tua, and included in the Complementary Studies (2009-10) of the Environmental Impact Assessment of the Foz Tua Hydroelectric Dam, promoted by EDP – Energias de Portugal, S.A. Data were collected between February and March 2010 during field visitis to 40 transects (20 diurnal and 20 nocturnal) with favourable habitats in 20 2x2 km UTM squares on the area of the lower Tua valley directly or indirectly affected by the Foz Tua dam. The presence of individuals was recorded mainly through the detection presence signs such as scats, tracks, rooting/rummages and occaisonally, live individuals (only in the nocturnal transects).
DOI: 10.5281/zenodo.10724834
title: Autonomous Milimeter-Scale Electrochemical Experimentation for Battery Materials Research (Part I)
DOI: 10.5281/zenodo.10724835
title: Autonomous Milimeter-Scale Electrochemical Experimentation for Battery Materials Research (Part I)
DOI: 10.15468/ehg6jc
title: Suivis écologiques 2022 RN164 - Chateauneuf-du-Faou-données faune - suivi écologiques 2022

description: données des suivis écologiques 2022 de la Faune
DOI: 10.15468/ckbsdp
title: Mammifères sauvages carnivores - base de données privées UR CPIE Pays de la Loire

description: Ce jeu de données présente des observations de diverses origines (privées) : études, données ponctuelles, etc. saisies dans la base de donnée régionale de l'UR CPIE des Pays de la Loire.
DOI: 10.6084/m9.figshare.13055459.v2
title: PRCC-TFE3 fusion-mediated PRKN/parkin-dependent mitophagy promotes cell survival and proliferation in PRCC-TFE3 translocation renal cell carcinoma

description: TFE3 (transcription factor binding to IGHM enhancer 3) nuclear translocation and transcriptional activity has been implicated in PINK1-PRKN/parkin-dependent mitophagy. However, the transcriptional control governing the mitophagy in TFE3/Xp11.2 translocation renal cell carcinoma (<i>TFE3</i> tRCC) is largely unknown. Here, we investigated the role and mechanisms of PRCC-TFE3 fusion protein, one of TFE3 fusion types in TFE3 tRCC, in governing mitophagy to promote development of <i>PRCC-TFE3</i> tRCC. We observed and analyzed mitophagy, transcriptional control of PRCC-TFE3 on PINK1-PRKN-dependent mitophagy, PRCC-TFE3 fusions nuclear translocation, cancer cell survival and proliferation under mitochondrial oxidative damage in <i>PRCC-TFE3</i> tRCC cell line. We found that nuclear-aggregated PRCC-TFE3 fusions constitutively activated expression of the target gene E3 ubiquitin ligase <i>PRKN</i>, leading to rapid PINK1-PRKN-dependent mitophagy that promoted cell survival under mitochondrial oxidative damage as well as cell proliferation through decreasing mitochondrial ROS formation. However, nuclear translocation of TFE3 fusions escaped from PINK1-PRKN-dependent mitophagy. Furthermore, we confirmed that PRCC-TFE3 fusion accelerated mitochondrial turnover by activating PPARGC1A/PGC1α-NRF1. In conclusion, our findings indicated a major role of PRCC-TFE3 fusion-mediated mitophagy and mitochondrial biogenesis in promoting proliferation of <i>PRCC-TFE3</i> tRCC.
DOI: 10.6084/m9.figshare.13055459.v1
title: PRCC-TFE3 fusion-mediated PRKN/parkin-dependent mitophagy promotes cell survival and proliferation in PRCC-TFE3 translocation renal cell carcinoma

description: TFE3 (transcription factor binding to IGHM enhancer 3) nuclear translocation and transcriptional activity has been implicated in PINK1-PRKN/parkin-dependent mitophagy. However, the transcriptional control governing the mitophagy in TFE3/Xp11.2 translocation renal cell carcinoma (<i>TFE3</i> tRCC) is largely unknown. Here, we investigated the role and mechanisms of PRCC-TFE3 fusion protein, one of TFE3 fusion types in TFE3 tRCC, in governing mitophagy to promote development of <i>PRCC-TFE3</i> tRCC. We observed and analyzed mitophagy, transcriptional control of PRCC-TFE3 on PINK1-PRKN-dependent mitophagy, PRCC-TFE3 fusions nuclear translocation, cancer cell survival and proliferation under mitochondrial oxidative damage in <i>PRCC-TFE3</i> tRCC cell line. We found that nuclear-aggregated PRCC-TFE3 fusions constitutively activated expression of the target gene E3 ubiquitin ligase <i>PRKN</i>, leading to rapid PINK1-PRKN-dependent mitophagy that promoted cell survival under mitochondrial oxidative damage as well as cell proliferation through decreasing mitochondrial ROS formation. However, nuclear translocation of TFE3 fusions escaped from PINK1-PRKN-dependent mitophagy. Furthermore, we confirmed that PRCC-TFE3 fusion accelerated mitochondrial turnover by activating PPARGC1A/PGC1α-NRF1. In conclusion, our findings indicated a major role of PRCC-TFE3 fusion-mediated mitophagy and mitochondrial biogenesis in promoting proliferation of <i>PRCC-TFE3</i> tRCC.
DOI: 10.15468/wnhrd2
title: 2021_LPO PACA_23

description: 2021_LPO-PACA_PNA_loutre:LPO PACA:PNA Loutre - Campagnol amphibie - Castor
DOI: 10.15468/7jvsnd
title: EDP Foz-Tua: Otter (Lutra lutra) (transects) - Ecological Monitoring Program (2018-2020)

description: The dataset contains records of otter (Lutra lutra, Mammalia) collected in the river Tua sub-basin and included in the Ecological Monitoring Program (2018-20) of the Environmental Impact Assessment of the Foz Tua Hydroelectric Dam, promoted by EDP – Energias de Portugal, S.A. Data were collected between July 2018 and July 2020 during field visits to 20 sampling transects in the riverbeds of the selected water lines with favourable habitats in the river Tua sub-basin. The presence of individuals was recorded by direct observation of signs (scats and/or footprints).
DOI: 10.15468/4yffns
title: 2019_LPO PACA_10

description: 2019_LPO-PACA_mammif:LPO PACA:PNA mammifères semi-aquatiques
DOI: 10.15468/6qbgut
title: EDP Baixo Sabor: Construction and Reservoir Filling Phases – Otter [2010-2014]

description: The dataset contains records of the Otter (Lutra lutra) collected in the lower valley of River Sabor (NE Portugal), in the scope of the long-term Ecological Monitoring Program (PME) of the Baixo Sabor Hydroelectric Dams (AHBS), promoted by EDP – Energias de Portugal, S.A. This dataset includes results of surveys made in and around the area affected by the dam, from November 2010 to December 2014. Sampling was performed in transects distributed along the lower Sabor river valley (and some tributaries), and along the rivers Maçãs and Angueira, up to 42 km upstream. The presence and identity of the target species were assessed through the presence of faeces (spraints) and/or footprints of the target species.
DOI: 10.15468/qucd7e
title: 2019_Parc Naturel Régional du Luberon_1

description: 2018_PNRL_Vertebres:Parc Naturel Régional du Luberon
DOI: 10.6084/m9.figshare.21443374.v1
title: Additional file 7 of Personalized targeted therapy prescription in colorectal cancer using algorithmic analysis of RNA sequencing data

description: Supplementary Material 7
DOI: 10.5281/zenodo.8084106
title: Dataset of Grapevine roots with length, diameter, and color annotations

description: Data includes 531 annotated images of grapevines roots which were acquired from 40 tubes across a range of depths in the soil profile in the Ramat Negev region, Israel, in August 2012 to December 2013. There were five tubes for each combination of cultivar, irrigation treatment, and tube distance from the trunk. The tubes were 2 m long, with a 6 cm outer diameter and 5.15 cm inner diameter. Data was acquired with manual MR acquisition system using a BTC-2, Bartz Technology Co. (Carpinteria, California, USA) MR camera system with its default settings. The camera was attached to an indexing handle and controlled using a laptop-computer-based image capture system (I-CAP, Bartz Technology Co., Carpentaria, California, USA). The images were taken by an older type of manual MR system, where an image view an area 16.5 × 14 mm<sup>2</sup> at a resolution of 754 × 648 pixels. Images were annotated using root-image analysis software Rootfly Version 2.0.2 (Clemson University, South Carolina, USA; http://www.ces.clemson.edu/~stb/rootfly/).
DOI: 10.15468/8ggj8p
title: EDP Foz Tua Large Mammals: river crossings - reference situation/early exploration phase. Compensatory Measures Monitoring Program (MC40B.1) [2012-2017]

description: The dataset contains records of large mammals (Mammalia) and other fauna (Herpetofauna, Aves) collected in the lower valley of the River Tua to assess the river crossing potential before (2012-winter 2016) and after (spring 2016-2017) the implementation of the Compensatory Measure MC40B.1, included in the Compensatory Measures Program (PMC) of the Foz Tua Hydroelectric Dam, promoted by EDP – Energias de Portugal, S.A. Data were collected between April 2012 and August 2017 three bridges, as well as in four natural crossings in Tua river (up the beginning of flooding phase, in late 2015), using visual prospection (ponts and/or transects), stone powder and camera trapping (2 cameras per site). Both direct (visual observation, photos) and indirect (faeces, tracks/trails) signs were used to confirm the presence of the target species/groups (the identification up to the species levels was not always possible).
DOI: 10.15468/5wwgm3
title: Données de la Réserve Naturelle Nationale de Chérine (36)-Données RNN Chérine 2021

description: Données produites en 2021 par l'association Chérine, en particulier dans le cadre de la gestion de la réserve naturelle nationale de Chérine.
DOI: 10.6084/m9.figshare.13579029.v1
title: Additional file 3 of Horizontally acquired antibacterial genes associated with adaptive radiation of ladybird beetles

description: Additional file 3: Multiple sequence alignment of the representative cwh protein sequences.
DOI: 10.6084/m9.figshare.13055787
title: Identification of candidate genes associated with photosynthesis in eggplant under elevated CO<sub>2</sub>

description: Elevated CO<sub>2</sub> can stimulate plant growth in greenhouses, but the molecular mechanism behind this response is unclear, especially in eggplants. In this study, we evaluated the physiological and photosynthetic response of the eggplant variety ‘Shenyuan 3’ under elevated CO<sub>2</sub>, and the candidate genes related to this response were identified by transcriptomic analysis. The results showed that elevated CO<sub>2</sub> can promote eggplant growth and development in greenhouses; plant height and stem diameter were maximally increased by 28.62% and 5.20%, respectively. Net photosynthetic rate, light saturation point and intercellular CO<sub>2</sub> concentration of eggplant leaves increased by 86.11%, 49.94% and 102.06%, respectively, whereas light compensation point, dark breathing rate and stomatal conductance decreased by 35.90%, 27.30% and 26.03%, respectively. A total of 169 differentially expressed genes (DEGs) were screened, of which 99 were up-regulated and 70 were down-regulated. Gene Ontology (GO) function enrichment analysis suggested that these proteins can be classified into 11 molecular functions, including transcription factors, phosphoenolpyruvate carboxylase and oxidoreductase. Pathway analysis indicated that elevated CO<sub>2</sub> affects plant growth and development by affecting carbon metabolism, carbon fixation, chlorophyll and porphyrin metabolism. Twelve genes were further detected by qRT-PCR, and 11 genes showed similar dynamics with the transcriptomic data. Bilirubin dehydrogenase <i>Sme2.5_04464.1_g00001</i> and the malate dehydrogenase gene <i>Sme2.5_03383.1_g00002</i>, which are involved in the chlorophyll porphyrin pathway and carbon metabolism, respectively, were up-regulated. Transcription factors <i>bHLH</i> (<i>Sme2.5_01232.1_g00025</i>) and GATA (<i>Sme2.5_00372.1_g00006</i>) were also up-regulated under elevated CO<sub>2</sub> treatment. Further research should focus on cloning these genes and identifying their response mechanism under elevated CO<sub>2</sub>.
DOI: 10.6084/m9.figshare.13055787.v1
title: Identification of candidate genes associated with photosynthesis in eggplant under elevated CO<sub>2</sub>

description: Elevated CO<sub>2</sub> can stimulate plant growth in greenhouses, but the molecular mechanism behind this response is unclear, especially in eggplants. In this study, we evaluated the physiological and photosynthetic response of the eggplant variety ‘Shenyuan 3’ under elevated CO<sub>2</sub>, and the candidate genes related to this response were identified by transcriptomic analysis. The results showed that elevated CO<sub>2</sub> can promote eggplant growth and development in greenhouses; plant height and stem diameter were maximally increased by 28.62% and 5.20%, respectively. Net photosynthetic rate, light saturation point and intercellular CO<sub>2</sub> concentration of eggplant leaves increased by 86.11%, 49.94% and 102.06%, respectively, whereas light compensation point, dark breathing rate and stomatal conductance decreased by 35.90%, 27.30% and 26.03%, respectively. A total of 169 differentially expressed genes (DEGs) were screened, of which 99 were up-regulated and 70 were down-regulated. Gene Ontology (GO) function enrichment analysis suggested that these proteins can be classified into 11 molecular functions, including transcription factors, phosphoenolpyruvate carboxylase and oxidoreductase. Pathway analysis indicated that elevated CO<sub>2</sub> affects plant growth and development by affecting carbon metabolism, carbon fixation, chlorophyll and porphyrin metabolism. Twelve genes were further detected by qRT-PCR, and 11 genes showed similar dynamics with the transcriptomic data. Bilirubin dehydrogenase <i>Sme2.5_04464.1_g00001</i> and the malate dehydrogenase gene <i>Sme2.5_03383.1_g00002</i>, which are involved in the chlorophyll porphyrin pathway and carbon metabolism, respectively, were up-regulated. Transcription factors <i>bHLH</i> (<i>Sme2.5_01232.1_g00025</i>) and GATA (<i>Sme2.5_00372.1_g00006</i>) were also up-regulated under elevated CO<sub>2</sub> treatment. Further research should focus on cloning these genes and identifying their response mechanism under elevated CO<sub>2</sub>.
DOI: 10.15468/mdw7n6
title: Ferme éolienne des Genêts - MAMMIFERES

description: inventaire des MAMMIFERES / Le projet éolien des Genêts concerne la création d’un parc d’une puissance nominale totale comprise entre 33,6 et 38,4 MW, composé de 8 éoliennes (de marque Vestas, modèle V136-4,2 MW). Le parc pourra fournir une production annuelle d’environ 75 300 MWh (facteur de charge après pertes estimé à 25,6 % soit un fonctionnement à pleine charge de 2 242 heures). Cette production représente la consommation annuelle moyenne de 17 000 foyers.
DOI: 10.15468/u41fam
title: Données opportunistes faune récoltées en 2017 par la SEPANLOG

description: Données opportunistes collectées en 2017 sur le site Natura 2000 La Vallée de l'Avance. Des indices de présence des individus sont notés pour la majorité des observations.Le processus d'observation des individus est renseigné pour toutes les observations.
DOI: 10.5281/zenodo.10727103
title: Brand-Erbisdorf Berg-Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of aGerman pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf.gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):https://kalliope-verbund.info/DE-611-BF-70963[Funktion: Im Findbuch anzeigen]

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannotbe published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch aufMaterialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nichtveröffentlicht werden dürfen).
DOI: 10.15468/9vquwb
title: Refondation - Construction d’une nouvelle imprimerie et d’un nouveau centre fiduciaire sur le site de Vic-Le-Comte à Longues - Mammifères - Inventaire non standardisé.

description: Liste des mammifères observés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet de refondation de Vic-le-Comte.
DOI: 10.6084/m9.figshare.13579026.v1
title: Additional file 2 of Horizontally acquired antibacterial genes associated with adaptive radiation of ladybird beetles

description: Additional file 2: Raw Ct values of quantitative PCR.
DOI: 10.15468/266z3m
title: 2012_LPO PACA_3

description: 2012_LPO_PNA-LCaC:LPO PACA:Plan National d'Actions Loutre - Campagnol amphibie - Castor
DOI: 10.15468/cdrwka
title: EDP Foz Tua Otter (Lutra lutra) - Complementary Studies [2010]

description: The dataset contains records of otter (Lutra lutra, Mammalia) collected in the Rivers Tua and Douro sub-basins and included in the Complementary Studies (2009-10) of the Environmental Impact Assessment of the Foz Tua Hydroelectric Dam, promoted by EDP – Energias de Portugal, S.A. Data were collected in February 2010 during field visits to 41 sampling points with favorable habitats in 16 10x10 km UTM squares in the river Tua sub-basin and in five sampling points in the river Douro, close to the the Tua mouth. The presence of individuals was recorded by direct observation of signs (scats).
DOI: 10.6084/m9.figshare.21443362.v1
title: Additional file 4 of Personalized targeted therapy prescription in colorectal cancer using algorithmic analysis of RNA sequencing data

description: Supplementary Material 4