cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/xp10v-k0j22
title: Shewanella WT OMV

description: Shewanella outer membrane vesicles, WT, high resolution, -1 to -5 micron defocus. Reconstruct with included scripts for ctf-corrected bin1 tomogram.
description: <strong>Tilt Series Date:</strong> 2018-06-25</p>
<strong>Data Taken By:</strong> LaurenAnn Metskas</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 0.0 μm,  magnification: 82000x. </p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> IMOD 4.9.8, ctffind4, custom scripts</p>
<strong>Collaborators and Roles:</strong> purified by Lori Zacharoff in the El Naggar lab at USC; data collected by Lauren Ann Metskas; data processed by Lauren Ann Metskas</p>
<strong>Sample Preparation:</strong> quantifoil finder grid, 10nm BSA-gold, 100% humidity, double blotted</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-15/rawdata/</p>15_dose-filt.st,  Tilt Series (Pixel Size 0.1778 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-15/rawdata/15_dose-filt.st"
        > <i class="download icon"></i> Download </a></p>

        15_dose-filt.rec,  Reconstruction (Pixel Size 0.7112 nm), 97.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-15/3dimage_102433/15_dose-filt.rec"
        > <i class="download icon"></i> Download </a></p>

        TS_15.mrc.mdoc,  25.2 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-15/rawdata/TS_15.mrc.mdoc"
        > <i class="download icon"></i> Download </a></p>

        frames.tar.bz2,  zipped raw frames, 2.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-15/file_20066/frames.tar.bz2"
        > <i class="download icon"></i> Download </a></p>

        scripts.tar.bz2,  zipped processing scripts, 8.1 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-06-25-15/file_20067/scripts.tar.bz2"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/a1107-bgz18
title: Shewanella WT OMV

description: Shewanella outer membrane vesicles, WT, high resolution
description: <strong>Tilt Series Date:</strong> 2018-07-25</p>
<strong>Data Taken By:</strong> LaurenAnn Metskas</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 0.0 μm,  magnification: 82000x. </p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> IMOD, ctffind4, custom scripts</p>
<strong>Collaborators and Roles:</strong> purified by Lori Zacharoff in the El Naggar lab at USC; data collected by Lauren Ann Metskas; data processed by Lauren Ann Metskas</p>
<strong>Sample Preparation:</strong> quantifoil finder grid, 10nm BSA-gold, 100% humidity, double blotted, -1.5 to -5 micron defocus</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-10/rawdata/</p>15_dose-filt.st,  Tilt Series (Pixel Size 0.1778 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-10/rawdata/15_dose-filt.st"
        > <i class="download icon"></i> Download </a></p>

        15_dose-filt.rec,  Reconstruction (Pixel Size 0.7112 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-10/3dimage_102525/15_dose-filt.rec"
        > <i class="download icon"></i> Download </a></p>

        TS_15.mrc.mdoc,  24.9 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-10/rawdata/TS_15.mrc.mdoc"
        > <i class="download icon"></i> Download </a></p>

        frames.tar.bz2,  zipped raw frames, 2.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-10/file_20167/frames.tar.bz2"
        > <i class="download icon"></i> Download </a></p>

        scripts.tar.bz2,  zipped processing scripts, 7.0 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-10/file_20168/scripts.tar.bz2"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ex6mq-hry55
title: Shewanella WT OMV

description: Shewanella outer membrane vesicles, WT, high resolution
description: <strong>Tilt Series Date:</strong> 2018-07-25</p>
<strong>Data Taken By:</strong> LaurenAnn Metskas</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 0.0 μm,  magnification: 82000x. </p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> IMOD, ctffind4, custom scripts</p>
<strong>Collaborators and Roles:</strong> purified by Lori Zacharoff in the El Naggar lab at USC; data collected by Lauren Ann Metskas; data processed by Lauren Ann Metskas</p>
<strong>Sample Preparation:</strong> quantifoil finder grid, 10nm BSA-gold, 100% humidity, double blotted, -1.5 to -5 micron defocus</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-3/rawdata/</p>04_dose-filt.st,  Tilt Series (Pixel Size 0.1778 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-3/rawdata/04_dose-filt.st"
        > <i class="download icon"></i> Download </a></p>

        04_dose-filt.rec,  Reconstruction (Pixel Size 0.7112 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-3/3dimage_102511/04_dose-filt.rec"
        > <i class="download icon"></i> Download </a></p>

        TS_04.mrc.mdoc,  25.0 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-3/rawdata/TS_04.mrc.mdoc"
        > <i class="download icon"></i> Download </a></p>

        frames.tar.bz2,  zipped raw frames, 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-3/file_20146/frames.tar.bz2"
        > <i class="download icon"></i> Download </a></p>

        scripts.tar.bz2,  zipped processing scripts, 7.7 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-3/file_20147/scripts.tar.bz2"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zdg03-adf89
title: Shewanella WT OMV

description: Shewanella outer membrane vesicles, WT, high resolution
description: <strong>Tilt Series Date:</strong> 2018-07-25</p>
<strong>Data Taken By:</strong> LaurenAnn Metskas</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 0.0 μm,  magnification: 82000x. </p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> IMOD, ctffind4, custom scripts</p>
<strong>Collaborators and Roles:</strong> purified by Lori Zacharoff in the El Naggar lab at USC; data collected by Lauren Ann Metskas; data processed by Lauren Ann Metskas</p>
<strong>Sample Preparation:</strong> quantifoil finder grid, 10nm BSA-gold, 100% humidity, double blotted, -1.5 to -5 micron defocus</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-16/rawdata/</p>22_dose-filt.st,  Tilt Series (Pixel Size 0.1778 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-16/rawdata/22_dose-filt.st"
        > <i class="download icon"></i> Download </a></p>

        22_dose-filt.rec,  Reconstruction (Pixel Size 0.7112 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-16/3dimage_102537/22_dose-filt.rec"
        > <i class="download icon"></i> Download </a></p>

        TS_22.mrc.mdoc,  25.0 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-16/rawdata/TS_22.mrc.mdoc"
        > <i class="download icon"></i> Download </a></p>

        frames.tar.bz2,  zipped raw frames, 2.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-16/file_20185/frames.tar.bz2"
        > <i class="download icon"></i> Download </a></p>

        scripts.tar.bz2,  zipped processing scripts, 7.9 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lma2018-07-25-16/file_20186/scripts.tar.bz2"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/21dy8-ge076
title: Hn in 5% CO2

description: H. neapolitanus cell h3 in 5% CO2Keywords: carboxysomes, internal granules
description: <strong>Tilt Series Date:</strong> 2007-09-20</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in 5% CO2</p>
  civ2007-09-20-1_slicer5600.jpg: periplasmic vesicle civ2007-09-20-1_slicer5601.jpg: unknown civ2007-09-20-1_slicer5602.jpg: flat vesicleperiplasmic vesicle civ2007-09-20-1_slicer5603.jpg: filament
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-1/rawdata/</p>Hn0h_h3_1st_180e12um22K_20sept07.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-1/rawdata/Hn0h_h3_1st_180e12um22K_20sept07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hn0h_h3_1st_180e12um22K_20sept07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 520.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-1/3dimage_3929/Hn0h_h3_1st_180e12um22K_20sept07_bin1.rec"
        > <i class="download icon"></i> Download </a></p>

        Hn0h_h3_1st_180e12um22K_20sept07_bin2_s103_filam.tif,  1.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-1/file_1571/Hn0h_h3_1st_180e12um22K_20sept07_bin2_s103_filam.tif"
        > <i class="download icon"></i> Download </a></p>

        Hn0h_h3_1st_180e12um22K_20sept07_bin2_s59_DNA.tif,  1.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-1/file_1572/Hn0h_h3_1st_180e12um22K_20sept07_bin2_s59_DNA.tif"
        > <i class="download icon"></i> Download </a></p>

        Hn0h_h3_1st_180e12um22K_20sept07_bin2_5ave_rec.mov,  file associated to 3D Image #3929, 16.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-1/file_1575/Hn0h_h3_1st_180e12um22K_20sept07_bin2_5ave_rec.mov"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pxtrq-sja95
title: Caulobacter crescentus

description: filament segmented by Sarah
description: <strong>Tilt Series Date:</strong> 2008-11-22</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-11-22-11/rawdata/</p>08nov22a_box658_014.st,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-11-22-11/rawdata/08nov22a_box658_014.st"
        > <i class="download icon"></i> Download </a></p>

        08nov22a_box658_014_full.rec,  Reconstruction (Pixel Size 1.288 nm), 1.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-11-22-11/3dimage_4511/08nov22a_box658_014_full.rec"
        > <i class="download icon"></i> Download </a></p>

        zl2008-11-22-11_clip01.rec,  Reconstruction (Pixel Size 1.288 nm) cropped by Sarah, 136.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-11-22-11/3dimage_13114/zl2008-11-22-11_clip01.rec"
        > <i class="download icon"></i> Download </a></p>

        zl2008-11-22-11_clip01-label-Filament01.am,  filament segmented by Sarah, 1.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-11-22-11/file_3070/zl2008-11-22-11_clip01-label-Filament01.am"
        > <i class="download icon"></i> Download </a></p>

        zl2008-11-22-11_clip01-label-Filament02.am,  filament segmented by Sarah, 1.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-11-22-11/file_3071/zl2008-11-22-11_clip01-label-Filament02.am"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.6wf6rh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lepidocephalichthys manipurensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032912-250811113504898/datasets/export for details.
DOI: 10.22002/x507n-kt747
title: Thiomicrospira crunogena

description: T. crunogena cell h7
description: <strong>Tilt Series Date:</strong> 2007-11-16</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Hydrogenovibrio crunogenus</p>
<strong>Strain:</strong> XCL-2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
  civ2007-11-16-5_slicer4317.jpg: Granule civ2007-11-16-5_slicer4319.jpg: Carboxysome civ2007-11-16-5_slicer4320.jpg: Elongated carboxysome civ2007-11-16-5_slicer4321.jpg: Intracellular vesicle civ2007-11-16-5_slicer4323.jpg: Unknown appendage civ2007-11-16-5_slicer4328.jpg: Chemoreceptor civ2007-11-16-5_slicer4333.jpg: Granule in carboxysome
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-16-5/rawdata/</p>Tc_h7_200e13um18K_16nov07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-16-5/rawdata/Tc_h7_200e13um18K_16nov07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Tc_h7_200e13um18K_16nov07_crop_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 101.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-16-5/3dimage_4150/Tc_h7_200e13um18K_16nov07_crop_bin2.rec"
        > <i class="download icon"></i> Download </a></p>

        Tc_h7_200e13um18K_16nov07_crop_bin2_s90.tif,  1.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-16-5/file_2119/Tc_h7_200e13um18K_16nov07_crop_bin2_s90.tif"
        > <i class="download icon"></i> Download </a></p>

        Tc_h7_200e13um18K_16nov07_crop_bin2_s84_elong_cbxy.tif,  1.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-16-5/file_2121/Tc_h7_200e13um18K_16nov07_crop_bin2_s84_elong_cbxy.tif"
        > <i class="download icon"></i> Download </a></p>

        Tc_h7_200e13um18K_16nov07_bin2ave5rec.mov,  file associated to 3D Image #4150, 20.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-16-5/file_2122/Tc_h7_200e13um18K_16nov07_bin2ave5rec.mov"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.25574/26035
title: Chandra X-ray Observatory ObsId 26035

description: Searching for Supermassive Black Holes in Dwarf Galaxies
DOI: 10.22002/3grqw-pvd62
title: Hn limited in CO2 for 3 hrs

description: H. neapolitanus cell h10 limited in CO2 for 3 hours
description: <strong>Tilt Series Date:</strong> 2007-04-20</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 84.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth limited in CO2 for 3 hours</p>
  civ2007-04-20-1_slicer8279.jpg: Halothiobacillus neapolitanus .  filament civ2007-04-20-1_slicer8280.jpg: Halothiobacillus neapolitanus .  extracellular vesicle civ2007-04-20-1_slicer8281.jpg: Halothiobacillus neapolitanus .  pili
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-04-20-1/rawdata/</p>Hn3h10_84e12um18K_apr20_07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-04-20-1/rawdata/Hn3h10_84e12um18K_apr20_07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hn3h10_84e12um18K_apr20_07_bin1.rec,  Reconstruction (Pixel Size 1.259 nm), 640.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-04-20-1/3dimage_3919/Hn3h10_84e12um18K_apr20_07_bin1.rec"
        > <i class="download icon"></i> Download </a></p>

        Hn3h10_s70_needlePPistring.tiff,  378.7 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-04-20-1/file_1530/Hn3h10_s70_needlePPistring.tiff"
        > <i class="download icon"></i> Download </a></p>

        Hn3h10_84e12um18K_5ave_rec_bin2.mov,  file associated to 3D Image #3919, 20.2 MB  
        
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DOI: 10.25574/26038
title: Chandra X-ray Observatory ObsId 26038

description: Monitoring the Jet in Centaurus A
DOI: 10.5281/zenodo.16929318
title: vdjHopper Example Data

description: vdjHopper Example Data

This repository provides example single-cell V(D)J sequencing files used by the vdjHopper R package. The data are intended for demonstration and teaching purposes only, allowing users to test the package’s decontamination, IgBLAST integration, and chain pairing workflows without requiring large raw datasets.

Contents

The dataset contains representative files derived from the 10x Genomics NSCLC tumor TCR enrichment dataset .All files have been subset or downsampled to reduce size and ensure the total archive remains <5 MB.





all_contig_annotations.csv.gzFiltered contig annotations (CSV, compressed). Contains selected columns such as barcode, chain, cdr3, v_gene, and j_gene.




all_contig.fasta.gzRepresentative TCR sequences in FASTA format.




all_contig.fastq.gzA small subset of raw sequencing reads in FASTQ format, provided for demonstration only.




 all_contig.bamFull BAM alignment file (~3.5 GB). This file is not included in the CRAN package build but can be downloaded from this Zenodo record if required for advanced tutorials. Users should call vdjHopper::fetch_example_data() to retrieve and cache this file programmatically.



License and Source





Original dataset: 10x Genomics – NSCLC tumor TCR enrichment dataset




License: CC BY 4.0



When using this data, please cite both 10x Genomics.