cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14338850.v1
title: CqsA/LuxS-HapR Quorum sensing circuit modulates type VI secretion system VﬂT6SS2 in <i>Vibrio fluvialis</i>

description: <i>Vibrio fluvialis</i> is an emerging enteric pathogen of increasing public health threat. Two quorum sensing (QS) systems, VfqI-VfqR and CqsA/LuxS-HapR, and two type VI secretion systems (T6SSs), VflT6SS1 and VflT6SS2, have been identified in <i>V. fluvialis</i>. Whether there exists any correlation between the two systems is unclear. In this study, we found that CqsA/LuxS-HapR circuit regulator LuxO represses while HapR activates VﬂT6SS2. The effect of LuxO is more pronounced at low cell density and is HapR-dependent. Deletion of <i>hapR</i> abolished Hcp expression and alleviated antibacterial virulence. However, these effects were rescued by HapR-expressing plasmid. Reporter fusion analyses showed that HapR is required for the promoter activities of VﬂT6SS2. Sequence inspection of the major cluster promoter revealed two potential Motif 1 HapR binding sites, and their bindings to HapR were confirmed by both electrophoretic mobility shift assay (EMSA) and DNase I footprinting assay. Meanwhile, two single Motif 2 sites were identified in <i>tssD</i>2_a (<i>hcp</i>A) and <i>tssD</i>2_b (<i>hcp</i>B) promoter regions of the orphan cluster which are less conserved and displayed lower affinities to HapR. Together, our study demonstrated that CqsA/LuxS-HapR QS manipulate VflT6SS2 in <i>V. fluvialis</i>, and this finding will enhance our understanding of possible crosstalk between T6SS and QS in microbes.
DOI: 10.6084/m9.figshare.16435885.v1
title: Additional file 2 of Deterministic transition of enterotypes shapes the infant gut microbiome at an early age

description: Additional file 2. Reference List of Datasets. Reference list of datasets included in this study.
DOI: 10.6084/m9.figshare.25211519.v1
title: Supplementary Material for: Temporal Trends in Severe Brain Injury and Associated Outcomes in Very Preterm Infants

description: Introduction: Severe brain injury (SBI), including severe intraventricular haemorrhage (sIVH) and cystic periventricular leukomalacia, poses significant challenges for preterm infants, yet recent data and trends are limited.

Methods: Analyses were conducted using the Australian and New Zealand Neonatal Network data on preterm infants born &lt;32 weeks’ gestation admitted at Monash Children’s Hospital, Australia, from January 2014 to April 2021. We assessed the occurrence and trends of SBI and sIVH among preterm infants, along with the rates and trends of death and neurodevelopmental impairment (NDI) in SBI infants.

Results: Of 1609 preterm infants, 6.7% had SBI, and 5.6% exhibited sIVH. 37.6% of infants with SBI did not survive to discharge, with 92% of these deaths occurring following redirection of clinical care. Cerebral palsy was diagnosed in 65.2% of SBI survivors, while 86.4% of SBI survivors experienced NDI. No statistically significant differences were observed in the temporal trends of SBI (adjusted OR (95% CI) 1.08 (0.97-1.20); P=0.13) or sIVH (adjusted OR (95% CI) 1.09 (0.97-1.21); P=0.11). Similarly, there was no statistically significant difference noted in the temporal trend of the composite outcome, which included death or NDI among infants with SBI (adjusted OR (95% CI) 0.90 (0.53-1.53); P=0.71).

Conclusion: Neither the rates of SBI nor its associated composite outcome of death or NDI improved over time. A notable proportion of preterm infants with SBI faced redirection of care and subsequent mortality, while most survivors exhibited adverse neurodevelopmental challenges. Development of better therapeutic interventions is imperative to improve outcomes for these vulnerable infants.
DOI: 10.6084/m9.figshare.16436043.v1
title: Additional file 1 of Novel variants in helicase for meiosis 1 lead to male infertility due to non-obstructive azoospermia

description: Additional file 1: Table S1. Predicted as pathogenic variants indetified in two patients carrying HFM1 variants
DOI: 10.6084/m9.figshare.21678960
title: Late Carboniferous bimodal volcanic rocks of the West Junggar Terrane, NW China: Implications for the postcollisional tectonic setting of the southwestern CAOB

description: The West Junggar terrain (WJT), as a crucial part of the Central Asian Orogenic Belt (CAOB), is distributed with numerous igneous rocks, which provide critical information for crustal growth. However, the closure of the Junggar Ocean (JO) and the beginning of the postcollisional tectonic stage of the WJT have been controversial. This study delimited the regional lithologic units based on remote sensing geological mapping and recognized a series of bimodal volcanic rocks (BVR) in Hala’alate Mountain of the WJT. LA-ICP‒MS zircon U‒Pb geochronology and geochemistry were used to discuss the petrogenesis of the BVR and determine the stage of regional tectonic evolution. Geochronological results yield crystallization ages of 302 ± 4 Ma, 298 ± 2 Ma, 304 ± 1 Ma, and 303 Ma± 2 Ma for the basaltic andesite, basalt, and two rhyolitic samples, respectively. Basalts and basaltic andesites are calc-alkaline, and display enrichment in light rare earth elements (LREEs) and large ion lithophile elements (LILEs) and depletion in high field strength elements (HFSEs). Notably, basaltic andesites in this area were once misjudged as sanukitoids owing to their low contents of Mg<sup>#</sup>, Ni, Cr, and other characteristics that are inconsistent with the typical definition of sanukitoids. The rhyolites are A<sub>2</sub>-type granitoids with high SiO<sub>2</sub> contents and are depleted in Nb, Ta, P, Ti, and Sr, showing enriched LREE patterns with negative Eu anomalies. These features indicate that the magma of the mafic end-member of the BVR is derived from the partial melting of the depleted lithospheric mantle, whereas the felsic end-member magma can be associated with the remelting of the lower crust due to the upwelling and underplating of mafic magma. In combination with previous studies of simultaneous basic dikes and felsic rocks, a postcollisional tectonic stage was proposed for the WTJ during the late Carboniferous, suggesting that the JO was closed.
DOI: 10.6084/m9.figshare.21678960.v1
title: Late Carboniferous bimodal volcanic rocks of the West Junggar Terrane, NW China: Implications for the postcollisional tectonic setting of the southwestern CAOB

description: The West Junggar terrain (WJT), as a crucial part of the Central Asian Orogenic Belt (CAOB), is distributed with numerous igneous rocks, which provide critical information for crustal growth. However, the closure of the Junggar Ocean (JO) and the beginning of the postcollisional tectonic stage of the WJT have been controversial. This study delimited the regional lithologic units based on remote sensing geological mapping and recognized a series of bimodal volcanic rocks (BVR) in Hala’alate Mountain of the WJT. LA-ICP‒MS zircon U‒Pb geochronology and geochemistry were used to discuss the petrogenesis of the BVR and determine the stage of regional tectonic evolution. Geochronological results yield crystallization ages of 302 ± 4 Ma, 298 ± 2 Ma, 304 ± 1 Ma, and 303 Ma± 2 Ma for the basaltic andesite, basalt, and two rhyolitic samples, respectively. Basalts and basaltic andesites are calc-alkaline, and display enrichment in light rare earth elements (LREEs) and large ion lithophile elements (LILEs) and depletion in high field strength elements (HFSEs). Notably, basaltic andesites in this area were once misjudged as sanukitoids owing to their low contents of Mg<sup>#</sup>, Ni, Cr, and other characteristics that are inconsistent with the typical definition of sanukitoids. The rhyolites are A<sub>2</sub>-type granitoids with high SiO<sub>2</sub> contents and are depleted in Nb, Ta, P, Ti, and Sr, showing enriched LREE patterns with negative Eu anomalies. These features indicate that the magma of the mafic end-member of the BVR is derived from the partial melting of the depleted lithospheric mantle, whereas the felsic end-member magma can be associated with the remelting of the lower crust due to the upwelling and underplating of mafic magma. In combination with previous studies of simultaneous basic dikes and felsic rocks, a postcollisional tectonic stage was proposed for the WTJ during the late Carboniferous, suggesting that the JO was closed.
DOI: 10.21942/uva.25189275
title: Dora WalkingTours Dataset (ICLR 2024)

description: Self-supervised learning has unlocked the potential of scaling up pretraining to billions of images, since annotation is unnecessary. But are we making the best use of data? How more economical can we be? In this work, we attempt to answer this question by making two contributions. First, we investigate first-person videos and introduce a "Walking Tours" dataset. These videos are high-resolution, hours-long, captured in a single uninterrupted take, depicting a large number of objects and actions with natural scene transitions. They are unlabeled and uncurated, thus realistic for self-supervision and comparable with human learning.Second, we introduce a novel self-supervised image pretraining method tailored for learning from continuous videos.<br><b>Reference:</b>Is ImageNet worth 1 video? Learning strong image encoders from 1 long unlabelled video. Shashanka Venkataramanan, Mamshad Nayeem Rizve, João Carreira, Yuki M. Asano<i>, </i>Yannis Avrithis. <i>In</i>: International Conference on Learning Representations 2024
DOI: 10.6084/m9.figshare.19581852.v1
title: Additional file 11 of Selective sorting and secretion of hY4 RNA fragments into extracellular vesicles mediated by methylated YBX1 to promote lung cancer progression

description: Additional file 11: Table S1. Clinical characteristics of plasma samples from NSCLC patients and healthy controls.
DOI: 10.6084/m9.figshare.19581855
title: Additional file 12 of Selective sorting and secretion of hY4 RNA fragments into extracellular vesicles mediated by methylated YBX1 to promote lung cancer progression

description: Additional file 12: Table S2. Differential expressed genes responded to hY4F overexpression in A549 cells identified by mRNA sequencing.
DOI: 10.6084/m9.figshare.19581852
title: Additional file 11 of Selective sorting and secretion of hY4 RNA fragments into extracellular vesicles mediated by methylated YBX1 to promote lung cancer progression

description: Additional file 11: Table S1. Clinical characteristics of plasma samples from NSCLC patients and healthy controls.
DOI: 10.6084/m9.figshare.19581855.v1
title: Additional file 12 of Selective sorting and secretion of hY4 RNA fragments into extracellular vesicles mediated by methylated YBX1 to promote lung cancer progression

description: Additional file 12: Table S2. Differential expressed genes responded to hY4F overexpression in A549 cells identified by mRNA sequencing.
DOI: 10.6084/m9.figshare.13285007.v1
title: Additional file 1 of circPARD3 drives malignant progression and chemoresistance of laryngeal squamous cell carcinoma by inhibiting autophagy through the PRKCI-Akt-mTOR pathway

description: Additional file 1: Table S1. Clinicopathological characteristics of 138 LSCC samples (cohort 1) for IHC staining of p62. Table S2. Clinicopathological characteristics of 107 LSCC samples (cohort 2) for RNA sequencing. Table S3. Clinicopathological characteristics of 100 LSCC samples (cohort 3) for qPCR analysis of circPARD3. Table S4. Detailed information of inhibitors. Table S5. Cell lines and growth medium. Table S6. Primer information for qPCR analysis. Table S7. Differentially expressed circRNAs in RNA sequencing data of 107 LSCC and paired ANM tissues. Table S8. Differentially expressed miRNAs in RNA sequencing data of 107 LSCC and paired ANM tissues. Table S9. Differentially expressed mRNAs in RNA sequencing data of 107 LSCC and paired ANM tissues. Table S10. Prediction of circPARD3 binding miRNAs by CircInteractome. Table S11. Downregulated genes in Tu 177 cells transfected with miR-145-5p mimics analyzed by microarray. Table S12. Prediction of miR-145-5p target gene by Targetminer. Table S13. Upregulated mRNAs in RNA sequencing data of 107 LSCC and paired ANM tissues
DOI: 10.6084/m9.figshare.20625034
title: Additional file 1 of Long-term outcomes of laparoscopic Extralevator Abdominoperineal excision with modified position change for low rectal Cancer treatment

description: Additional file 1.
DOI: 10.6084/m9.figshare.20625034.v1
title: Additional file 1 of Long-term outcomes of laparoscopic Extralevator Abdominoperineal excision with modified position change for low rectal Cancer treatment

description: Additional file 1.
DOI: 10.6084/m9.figshare.22721489.v1
title: Additional file 2 of Partial erosion on under-methylated regions and chromatin reprogramming contribute to oncogene activation in IDH mutant gliomas

description: Additional file 2. Table S1: Sample information of WGBS data.
DOI: 10.6084/m9.figshare.22721440
title: Additional file 2 of Apoptosis related genes mediated molecular subtypes depict the hallmarks of the tumor microenvironment and guide immunotherapy in bladder cancer

description: Additional file 2. Supplementary table 2. List of 91 apoptosis related genes used in this study.
DOI: 10.6084/m9.figshare.22721443.v1
title: Additional file 3 of Apoptosis related genes mediated molecular subtypes depict the hallmarks of the tumor microenvironment and guide immunotherapy in bladder cancer

description: Additional file 3. Supplementary table 3. Differentially expressed apoptosis related genes between tumor and normal tissue inTCGA-BLCA dataset.
DOI: 10.6084/m9.figshare.22721455
title: Additional file 7 of Apoptosis related genes mediated molecular subtypes depict the hallmarks of the tumor microenvironment and guide immunotherapy in bladder cancer

description: Additional file 7. Supplementary table 7. Summary of detailed clinical information and apoptosisscore in IMvigor210 (mUC) cohort.
DOI: 10.6084/m9.figshare.22721440.v1
title: Additional file 2 of Apoptosis related genes mediated molecular subtypes depict the hallmarks of the tumor microenvironment and guide immunotherapy in bladder cancer

description: Additional file 2. Supplementary table 2. List of 91 apoptosis related genes used in this study.
DOI: 10.15468/dl.s4y6kq
title: Occurrence Download

description: A dataset containing 2717332 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2717332 records from 897 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077033-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byxatb
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Physochlaina semenowii Regel"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077053-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gtaxqa
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinanga palustris Kiew"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077054-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sk7qza
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala mariamae Tamamsch."
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077055-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwyvsu
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phreatia mearnsii Ames"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077056-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2aa6m
title: Occurrence Download

description: A dataset containing 907 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Weinmannia trichosperma Cav."
 ]
}

 The dataset includes 907 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077057-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6ap8n
title: Occurrence Download

description: A dataset containing 5490 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Russian Federation, Ukraine, Germany, Poland, Switzerland, Austria, Czechia, Slovakia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ceratodon purpureus (Hedw.) Brid."
 ]
}

 The dataset includes 5490 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077058-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22938797
title: A global dataset for assessing nitrogen-related plant traits using drone imagery in major field crop species

description:  
Authors:
 Diogo Castilho1,2*, Danilo Tedesco3, Carlos Hernandez3, Beata E. Madari1,2, Ignacio Ciampitti3*
<br>
1 Graduate Program in Agronomy, Federal University of Goiás, Goiânia, GO, Brazil
2 Brazilian Agricultural Research Corporation (Embrapa Rice and Beans), Santo Antônio de Goiás, GO, Brazil.
3 Department of Agronomy, Kansas State University, 1712 Claflin Rd., Manhattan, KS, 66506, USA
 
A new dataset was described and summarized the state of the art in drone-based plant traits assessment, resulting from a systematic search of Scopus and Web of Science databases. This dataset contains the result of extracting data of 14 plant traits (yield [t ha-1], plant N density [g m-2], plant N concentration [%], plant N accumulation [g m-2], NUE - plant N content [kg ha-1], NNI, N uptake [kg ha-1], N rate [kg ha-1], leaf N density [g m-2], leaf N content [g m-2], leaf N concentration [%], leaf N accumulation [g m-2], canopy N content [g m-2], and biomass [t ha-1]) from 41 papers with a total of 11189 observations for 11 major crop species from 13 countries around the globe.
<br>
Many vegetation indices derived from unmanned aerial vehicle could track the relative yield, N uptake, and leaf N concentration in wheat, cotton and rice species. This method may not only be used to evaluate the N management practices but also may have application in making in-season N management decisions. Furthermore, this dataset is relevant to develop precise and broad diagnostic of N nutritional status of wide crop species in different sites and conditions.
<br>
For more information related to this dataset or codes, please contact the corresponding author at: diogocastilho6@hotmail.com
<br>
For cite the dataset, please use:
Castilho, D., Tedesco, D.,  Hernandez, C., Madari, E. B., Ciampitti, I.   
A global dataset for assessing nitrogen-related plant traits using drone imagery in major field crop species. figshare https://figshare.com/s/177cdcd70963a415925b (2023).
DOI: 10.15468/dl.w4q47b
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Physokentia avia H.E.Moore"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077059-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9qcwmb
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinanga pantiensis J.Dransf."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077060-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqx7k6
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala mascatensis Boiss."
 ]
}

 The dataset includes 38 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077062-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4bjhg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phreatia mentosa Schltr."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077063-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zsdtsz
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Physokentia dennisii H.E.Moore"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077064-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.baf4x5
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinanga paradoxa (Griff.) Scheff."
 ]
}

 The dataset includes 46 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077065-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.960dh/15
title: Reference S15. A landowner’s guide to prairie management in Minnesota.

description: Reference S15. Svedarsky WD, Kuchenreuther MA, Cuomo GJ, Buesseler P, Moechnig H, Singh A. 2002. A landowner’s guide to prairie management in Minnesota. Crookston, Minnesota: University of Minnesota, Northwest Research and Outreach Center, Natural Resources Conservation Service, and the Minnesota Department of Natural Resources. also available at https://www.crk.umn.edu/sites/crk.umn.edu/files/landowners-guide-to-prairie-management-in-minnesota-svedarsky.pdf
DOI: 10.15468/dl.33u7yn
title: Occurrence Download

description: A dataset containing 315 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phreatia micrantha (A.Rich.) Lindl."
 ]
}

 The dataset includes 315 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077066-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.