cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12562733
title: Metadata record for: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

description: This dataset contains key characteristics about the data described in the Data Descriptor Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12562733.v1
title: Metadata record for: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

description: This dataset contains key characteristics about the data described in the Data Descriptor Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12562676
title: agnostosDB_dbf02445-20200519_CPR-GCs

description: Gene cluster (GC) sequence database in MMseqs2 format and tab-separated table containing information about the set of 60,515 lineage-specific GCs (54,343 of unknown function and 6,172 GCs of known function) within the Cand. Patescibacteria phylum, more commonly known as Candidate Phyla Radiation (CPR).The GCs are part of the agnostosDB (dbf02445-20200519) that can be found at https://doi.org/10.6084/m9.figshare.12459056 , and is described in Vanni et al. 2020.Visit the website https://dark.metagenomics.eu/ for more detailed information about the analyses.
DOI: 10.6084/m9.figshare.12562682
title: Artifact for Euro-Par2020 Paper -- Improving mapping for sparse direct solvers: A trade-off between data locality and load balancing

description: It includes all raw data and scripts for running experiments, cleaning data and plotting. A detailed introduction could be found in the zip file package.
DOI: 10.6084/m9.figshare.12562688
title: Multiple sequence alignment for identification of divergent selection of MGF505/MGF360

description: Multiple sequence alignment used for identification of divergent selection of MGF505/MGF360
DOI: 10.6084/m9.figshare.12562820.v2
title: Inbreeding depresses altruism in a cooperative society

description: Data used in the paper 'Inbreeding depresses altruism in a cooperative society' accepted in the journal 'Ecology Letters', along with R code used for analysis. See the associated research paper for details on data collection. In brief, the data is from a long term research project on banded mongooses (Mungos mungo) in Queen Elizabeth National Park, Uganda. The data file attached includes behavioural, life history and genetic data - see the notes in the column headings for clarification. The data was collected under licence from the Uganda Wildlife Authority and the study has been ethically reviewed by the University of Exeter.<br>If you would like to use the data for further analyses then please do not hesitate to contact Prof Michael Cant and/or Dr Hazel Nichols for clarification of the data and collection methods, and for updated versions of the data set. We welcome new collaborators and research ideas.
DOI: 10.6084/m9.figshare.12562670
title: Artifact and Instructions to Generate Main Experimental Results for Conference Proceeding 2020 Paper: SYCL-Bench: A Versatile Cross-Platform Benchmark Suite for Heterogeneous Computing

description: The overview document describes the step-by-step instructions to generate the results presented in the paper. The Python scripts can be used to pre-process and plot the results. The CSV files contain our results on NVIDIA TITAN X and Intel Xeon CPU.
DOI: 10.6084/m9.figshare.12562688.v1
title: Multiple sequence alignment for identification of divergent selection of MGF505/MGF360

description: Multiple sequence alignment used for identification of divergent selection of MGF505/MGF360
DOI: 10.6084/m9.figshare.12562820.v1
title: Inbreeding depresses altruism in a cooperative society

description: Data used in the paper 'Inbreeding depresses altruism in a cooperative society' accepted in the journal 'Ecology Letters', along with R code used for analysis. See the associated research paper for details on data collection. In brief, the data is from a long term research project on banded mongooses (Mungos mungo) in Queen Elizabeth National Park, Uganda. The data file attached includes behavioural, life history and genetic data - see the notes in the column headings for clarification. The data was collected under licence from the Uganda Wildlife Authority and the study has been ethically reviewed by the University of Exeter.<br>If you would like to use the data for further analyses then please do not hesitate to contact Prof Michael Cant and/or Dr Hazel Nichols for clarification of the data and collection methods, and for updated versions of the data set. We welcome new collaborators and research ideas.
DOI: 10.6084/m9.figshare.12562607
title: saturation

description: AAs_saturation、PCGs_saturation
DOI: 10.6084/m9.figshare.12562616
title: Data_Matrix_46

description: 46 taxa 10AA aligned with mafft
DOI: 10.6084/m9.figshare.12562670.v1
title: Artifact and Instructions to Generate Main Experimental Results for Conference Proceeding 2020 Paper: SYCL-Bench: A Versatile Cross-Platform Benchmark Suite for Heterogeneous Computing

description: The overview document describes the step-by-step instructions to generate the results presented in the paper. The Python scripts can be used to pre-process and plot the results. The CSV files contain our results on NVIDIA TITAN X and Intel Xeon CPU.
DOI: 10.6084/m9.figshare.12562682.v1
title: Artifact for Euro-Par2020 Paper -- Improving mapping for sparse direct solvers: A trade-off between data locality and load balancing

description: It includes all raw data and scripts for running experiments, cleaning data and plotting. A detailed introduction could be found in the zip file package.
DOI: 10.6084/m9.figshare.12562676.v2
title: agnostosDB_dbf02445-20200519_CPR-GCs

description: Gene cluster (GC) sequence database in MMseqs2 format and tab-separated table containing information about the set of 60,515 lineage-specific GCs (54,343 of unknown function and 6,172 GCs of known function) within the Cand. Patescibacteria phylum, more commonly known as Candidate Phyla Radiation (CPR).The GCs are part of the agnostosDB (dbf02445-20200519) that can be found at https://doi.org/10.6084/m9.figshare.12459056 , and is described in Vanni et al. 2020.Visit the website https://dark.metagenomics.eu/ for more detailed information about the analyses.
DOI: 10.6084/m9.figshare.12562601
title: Sequence Assembly and Base Composition

description: Assembly note including failure of CR Base composition table
DOI: 10.6084/m9.figshare.12562607.v1
title: saturation

description: AAs_saturation、PCGs_saturation
DOI: 10.6084/m9.figshare.12562616.v1
title: Data_Matrix_46

description: 46 taxa 10AA aligned with mafft
DOI: 10.6084/m9.figshare.12562589
title: Tree_46_10AA

description: IQ treePhylobayes
DOI: 10.6084/m9.figshare.12562556
title: Preliminary proteome profile by LC-MS/MS in HPCOA07/03C treated with cortisol or vehicle

description: The conditionally immortalised line of human hippocampal progenitor cells HPCOA07/03C were treated for 72h with 100uM cortisol or vehicle (1% v/v EtOH). Samples from n = 3 replicates were pooled for each condition to produce n = 1 combined sample for profiling of protein expression in cortisol treated versus vehicle treated cells. No statistical comparison between conditions is valid due to sample pooling. To view file, download the proteome analytics software Scaffold (http://www.proteomesoftware.com/products/scaffold/) and use viewer mode (free).
DOI: 10.6084/m9.figshare.12562676.v1
title: agnostosDB_dbf02445-20200519_CPR-GCs

description: Gene cluster (GC) sequence database in MMseqs2 format and tab-separated table containing information about the set of 60,523 lineage-specific GCs (54,350 of unknown function and 6,173 GCs of known function) within the Cand. Patescibacteria phylum, more commonly known as Candidate Phyla Radiation (CPR).The GCs are part of the agnostosDB (dbf02445-20200519) that can be found at https://figshare.com/account/projects/82241/articles/12459056 , and is described in Vanni et al. 2020.Visit the website https://dark.metagenomics.eu/ for more detailed information about the analyses.
DOI: 10.6084/m9.figshare.12562553
title: Supplementary Material for: Characteristics of Patients Who Achieve Serum Phosphorus Control on Sucroferric Oxyhydroxide or Sevelamer Carbonate: A post hoc Analysis of a Phase 3 Study

description: <b><i>Introduction:</i></b> Control of hyperphosphatemia in patients on dialysis remains a major challenge. <b><i>Objective:</i></b> This study evaluated predictors of serum phosphorus (sP) control among dialysis patients treated with noncalcium, oral phosphate binder therapy in a phase 3 clinical trial. <b><i>Methods:</i></b> Post hoc analyses were performed using data for patients with hyperphosphatemia who received 52 weeks of treatment with sucroferric oxyhydroxide (SFOH) or sevelamer carbonate (sevelamer). Patients were categorized into those who achieved sP control (<i>n</i> = 302; defined as sP ≤ 5.5 mg/dL at week 52), and those with uncontrolled sP (<i>n</i> = 195; sP &gt;5.5 mg/dL at week 52). Because SFOH and sevelamer have previously demonstrated similar effects on chronic kidney disease-mineral-bone disorder parameters in this study, the treatment groups were pooled. <b><i>Results:</i></b> Average age at baseline was higher among sP-controlled versus sP-uncontrolled patients (56.9 vs. 53.4 years; <i>p</i> = 0.005). Baseline sP levels were significantly lower among sP-controlled versus sP-uncontrolled patients (7.30 vs. 7.85 mg/dL; <i>p</i> &lt; 0.001), and sP reductions from baseline were significantly greater in the sP-controlled group (−2.89 vs. −0.99 mg/dL at week 52; <i>p</i> &lt; 0.001). Logistic regression analysis identified higher baseline sP levels (odds ratio [OR] = 0.86, 95% confidence interval [CI]: 0.765–0.960), no concomitant active vitamin D therapy use (OR = 0.51, 95% CI: 0.328–0.804), and higher body mass index at baseline (OR = 0.96, 95% CI: 0.937–0.992) as significant predictors of uncontrolled sP. <b><i>Conclusion:</i></b> This analysis indicates that sP control may be more challenging in younger patients with high sP levels. Closer monitoring and management of serum phosphorus levels may be required in this population.
DOI: 10.6084/m9.figshare.12562589.v1
title: Tree_46_10AA

description: IQ treePhylobayes
DOI: 10.6084/m9.figshare.12562502
title: Supplementary Material for: Nomenclature for Kidney Function and Disease: Executive Summary and Glossary from a Kidney Disease: Improving Global Outcomes (KDIGO) Consensus Conference

description: Medicine
DOI: 10.6084/m9.figshare.12562553.v1
title: Supplementary Material for: Characteristics of Patients Who Achieve Serum Phosphorus Control on Sucroferric Oxyhydroxide or Sevelamer Carbonate: A post hoc Analysis of a Phase 3 Study

description: <b><i>Introduction:</i></b> Control of hyperphosphatemia in patients on dialysis remains a major challenge. <b><i>Objective:</i></b> This study evaluated predictors of serum phosphorus (sP) control among dialysis patients treated with noncalcium, oral phosphate binder therapy in a phase 3 clinical trial. <b><i>Methods:</i></b> Post hoc analyses were performed using data for patients with hyperphosphatemia who received 52 weeks of treatment with sucroferric oxyhydroxide (SFOH) or sevelamer carbonate (sevelamer). Patients were categorized into those who achieved sP control (<i>n</i> = 302; defined as sP ≤ 5.5 mg/dL at week 52), and those with uncontrolled sP (<i>n</i> = 195; sP &gt;5.5 mg/dL at week 52). Because SFOH and sevelamer have previously demonstrated similar effects on chronic kidney disease-mineral-bone disorder parameters in this study, the treatment groups were pooled. <b><i>Results:</i></b> Average age at baseline was higher among sP-controlled versus sP-uncontrolled patients (56.9 vs. 53.4 years; <i>p</i> = 0.005). Baseline sP levels were significantly lower among sP-controlled versus sP-uncontrolled patients (7.30 vs. 7.85 mg/dL; <i>p</i> &lt; 0.001), and sP reductions from baseline were significantly greater in the sP-controlled group (−2.89 vs. −0.99 mg/dL at week 52; <i>p</i> &lt; 0.001). Logistic regression analysis identified higher baseline sP levels (odds ratio [OR] = 0.86, 95% confidence interval [CI]: 0.765–0.960), no concomitant active vitamin D therapy use (OR = 0.51, 95% CI: 0.328–0.804), and higher body mass index at baseline (OR = 0.96, 95% CI: 0.937–0.992) as significant predictors of uncontrolled sP. <b><i>Conclusion:</i></b> This analysis indicates that sP control may be more challenging in younger patients with high sP levels. Closer monitoring and management of serum phosphorus levels may be required in this population.
DOI: 10.6084/m9.figshare.12562556.v1
title: Preliminary proteome profile by LC-MS/MS in HPCOA07/03C treated with cortisol or vehicle

description: The conditionally immortalised line of human hippocampal progenitor cells HPCOA07/03C were treated for 72h with 100uM cortisol or vehicle (1% v/v EtOH). Samples from n = 3 replicates were pooled for each condition to produce n = 1 combined sample for profiling of protein expression in cortisol treated versus vehicle treated cells. No statistical comparison between conditions is valid due to sample pooling. To view file, download the proteome analytics software Scaffold (http://www.proteomesoftware.com/products/scaffold/) and use viewer mode (free).
DOI: 10.15131/shef.data.12562346
title: Electrical and optical characterisation of low temperature grown InGaAs for photodiode applications

description: Dilute bismide and nitride alloys are promising semiconductors for bandgap engineering, opening additional design freedom for devices such as infrared photodiodes. Low growth temperatures are required to incorporate bismuth or nitrogen into III‑V semiconductors. However, the effects of low growth temperature on dark current and responsivity are not well understood. In this work, a set of InGaAs p‑i‑n wafers were grown at a constant temperature of 250, 300, 400 and 500 °C for all p, i and n layers. A second set of wafers was grown where the p and n layers were grown at 500 °C while the i-layers were grown at 250, 300 and 400 °C. Photodiodes were fabricated from all seven wafers. When constant growth temperature was employed (for all p, i and n layers), we observed that photodiodes grown at 500 °C show dark current density at ‑1 V that is 6 orders of magnitude lower while the responsivity at an illumination wavelength of 1520 nm is 4.5 times higher than those from photodiodes grown at 250 °C. Results from the second set of wafers suggest that performance degradation can be recovered by growing the p and n layers at high temperature. For instance, comparing photodiodes with i-layers grown at 250 °C, photodiodes showed dark current density at -1 V that is 5 orders of magnitude lower when the p and n layer were grown at 500 °C. Postgrowth annealing, at 595 °C for 15 minutes, on the two wafers grown at 250 and 300 °C showed recovery of diode responsivity but no significant improvement in the dark current. Our work suggests that growth of the cap layer at high temperature is necessary to maintain the responsivity and minimise the dark current degradation, offering a pathway to developing novel photodiode materials that necessitate low growth temperatures.
DOI: 10.6084/m9.figshare.12562502.v1
title: Supplementary Material for: Nomenclature for Kidney Function and Disease: Executive Summary and Glossary from a Kidney Disease: Improving Global Outcomes (KDIGO) Consensus Conference

description: Medicine
DOI: 10.6084/m9.figshare.12562256
title: JVASP-48402 to JVASP-49936

description: JARVIS-DFT
DOI: 10.15131/shef.data.12562346.v1
title: Electrical and optical characterisation of low temperature grown InGaAs for photodiode applications

description: Dilute bismide and nitride alloys are promising semiconductors for bandgap engineering, opening additional design freedom for devices such as infrared photodiodes. Low growth temperatures are required to incorporate bismuth or nitrogen into III‑V semiconductors. However, the effects of low growth temperature on dark current and responsivity are not well understood. In this work, a set of InGaAs p‑i‑n wafers were grown at a constant temperature of 250, 300, 400 and 500 °C for all p, i and n layers. A second set of wafers was grown where the p and n layers were grown at 500 °C while the i-layers were grown at 250, 300 and 400 °C. Photodiodes were fabricated from all seven wafers. When constant growth temperature was employed (for all p, i and n layers), we observed that photodiodes grown at 500 °C show dark current density at ‑1 V that is 6 orders of magnitude lower while the responsivity at an illumination wavelength of 1520 nm is 4.5 times higher than those from photodiodes grown at 250 °C. Results from the second set of wafers suggest that performance degradation can be recovered by growing the p and n layers at high temperature. For instance, comparing photodiodes with i-layers grown at 250 °C, photodiodes showed dark current density at -1 V that is 5 orders of magnitude lower when the p and n layer were grown at 500 °C. Postgrowth annealing, at 595 °C for 15 minutes, on the two wafers grown at 250 and 300 °C showed recovery of diode responsivity but no significant improvement in the dark current. Our work suggests that growth of the cap layer at high temperature is necessary to maintain the responsivity and minimise the dark current degradation, offering a pathway to developing novel photodiode materials that necessitate low growth temperatures.
DOI: 10.6084/m9.figshare.12562223
title: Kohorte3_Welle1_practices.sav

description: Einfluss der Promotionsphase auf die Karriereentwicklung von NachwuchswissenschaftlerInnen in der Medizin und den Lebenswissenschaften.<br>Influence of the doctoral phase on the career of young researchers in medicine and life-sciences.<br>
DOI: 10.6084/m9.figshare.12562253
title: JVASP-49983 to JVASP-50904

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.12562199
title: The data output of the analysis of variance and Tukey's post hoc test to determine dose-dependent differences in venom-induced brine shrimp lethality

description: This dataset contains the following:<br>1. ANOVA tables (adjusted mortality as variate) for 24, 48, and 72 hour exposure of brine shrimps to different concentrations of Naja ashei venom<br><br>2. Table of effects (24, 48, and 72 hours of exposure)<br><br>3. Table of means (24, 48, and 72 hours of exposure)<br><br>4. Standard error of differences of means (24, 48, and 72 hours of exposure)<br><br>5. Tukey's 95% confidence intervals (24, 48, and 72 hours of exposure)<br>
DOI: 10.6084/m9.figshare.12562220
title: Studie_3_K1-3_practices.sav

description: Einfluss der Promotionsphase auf die Karriereentwicklung von NachwuchswissenschaftlerInnen in der Medizin und den Lebenswissenschaften.<br>Influence of the doctoral phase on the career of young researchers in medicine and life-sciences.
DOI: 10.6084/m9.figshare.12562199.v2
title: The data output of the analysis of variance and Tukey's post hoc test to determine dose-dependent differences in venom-induced brine shrimp lethality

description: This dataset contains the following:<br>1. ANOVA tables (adjusted mortality as variate) for 24, 48, and 72 hour exposure of brine shrimps to different concentrations of Naja ashei venom<br><br>2. Table of effects (24, 48, and 72 hours of exposure)<br><br>3. Table of means (24, 48, and 72 hours of exposure)<br><br>4. Standard error of differences of means (24, 48, and 72 hours of exposure)<br><br>5. Tukey's 95% confidence intervals (24, 48, and 72 hours of exposure)<br>
DOI: 10.6084/m9.figshare.12562175
title: The data output of simple linear regression analysis to determine the svPLA2 activity of Naja ashei venom

description: This dataset contains: <br><br>1. The regression curve of the %svPLA<sub>2</sub> activity against log concentration of <i>Naja ashei</i> venom<br>2. Descriptive statistics (mean and standard deviation) of the %svPLA2 activity and log concentration of Naja ashei venom<br>3. Pearson correlation coefficients of the %svPLA2 activity and log concentration of Naja ashei venom<br>4. Model summary and ANOVA tables<br>5. Coefficients and residual statistics<br>
DOI: 10.6084/m9.figshare.12562172
title: Supplementary Material for: Development of an Infrared Monitor-Guided Bleb Revision Procedure

description: The needle revision procedure to address failing filtering blebs is a blind technique that might easily damage the scleral flap, conjunctiva, and choroid. We propose a new surgical procedure, infrared monitor-guided bleb revision, to perform bleb revision minimally invasively and effectively, and demonstrate the procedure in a patient. We developed the guided procedure with the infrared monitor to observe the bleb interior with greater contrast. Under the monitor, we dissect the hard fibrotic tissue with a bleb knife and, if necessary, remove adhesions using a needle and vitreous forceps. Finally, 5-fluorouracil is injected into the subconjunctiva. We have performed bleb revisions safely with clear visualization of the scleral flap using an infrared light. In the current case, the patient had good intraocular pressure control for about 1 year. The new infrared monitor-guided bleb revision procedure facilitates successful bleb revisions without damage to the underlying structures.
DOI: 10.6084/m9.figshare.12562199.v1
title: The data output of the analysis of variance and Tukey's post hoc test to determine dose-dependent differences in venom-induced brine shrimp lethality

description: This data summarizes the dose-dependent differences in lethality of Naja ashei venom<br>
DOI: 10.6084/m9.figshare.12562148
title: Raw phylogenetic data_Genetic variability of spelt factor gene in Triticum and Aegilops species_BMC Plant Biology.nwk

description: Raw phylogenetic data for "Genetic variability of spelt factor gene in Triticum and Aegilops species" study<br>
DOI: 10.6084/m9.figshare.12562154
title: Instructions to generate experimental results for conference proceedings 2020 paper: Multiprecision block-Jacobi for Iterative Triangular Solves

description: This artifact presents instructions on how to generate the experimental results in section 4 of the Paper "Multiprecision block-Jacobi for Iterative Triangular Solves". It points to the Ginkgo open source library and contains precise instructions on how to reproduce the performance results presented in the Paper using an openly available code example.<br>
DOI: 10.6084/m9.figshare.12562163
title: The data output of the analysis of variance (+Tukey's post hoc test) to determine the dose-dependent differences in the svPLA2 activity of Naja ashei venom

description: This data set contains: <br><br>1. The ANOVA table (svPLA2 response as variate)<br>2. The table of effects (log concentration effects)<br><br>3. The table of means (svPLA2 response as variate)<br><br>4. Standard errors of differences of the means<br>5. Tukey's 95% confidence intervals <br><br>
DOI: 10.6084/m9.figshare.12562154.v1
title: Instructions to generate experimental results for conference proceedings 2020 paper: Multiprecision block-Jacobi for Iterative Triangular Solves

description: This artifact presents instructions on how to generate the experimental results in section 4 of the Paper "Multiprecision block-Jacobi for Iterative Triangular Solves". It points to the Ginkgo open source library and contains precise instructions on how to reproduce the performance results presented in the Paper using an openly available code example.<br>
DOI: 10.6084/m9.figshare.12562136
title: The raw data on the protein content determination of Naja ashei venom and antivenom using bovine serum albumin as standard

description: This data contains absorbance readings of: <br><br>1. Bovine serum albumin (protein standard)<br>2. Naja ashei venom<br>3. Vins Bioproducts antivenom<br>4. Pan AFRICA Inoserp antivenom<br>