DOI: 10.5281/zenodo.14624975
title: Global Bee Interaction Data

description: Last modified: January 09, 2025

IntroductionThis dataset comprises all bee interactions indexed by Global Biotic Interactions (GloBI; Poelen et al. 2014). It is published quarterly by the Big Bee Project (Seltmann et al. 2021) to summarize all available knowledge about bee interactions from natural history collections, community science observations (i.e., iNaturalist), and the literature. Interactions include flower visitation, parasitic interactions (mite, viral), lecty, and many others.

Data DescriptionPlease see the integration process page to better understand how Global Biotic Interactions combines datasets from various sources. The complete interaction dataset for all species can be accessed via https://www.globalbioticinteractions.org/data.

Data is filtered for unique records based on the interaction description and source citation. Archives contain full data records and unique filtered records in tab-delimited format.

Dataset column name definitions https://api.globalbioticinteractions.org/interactionFields or https://api.globalbioticinteractions.org/interactionFields

Duplicate records occur in the database because more than one provider shares information. This is most frequently occuring in museum specimen data and duplicates can be identified evaluating the institutionCode, collectionCode and catalogNumber fields. The file catalogNumber_counts.tsv groups records by these three fields for this dataset, but does not filter out duplicate records. Additionally, this dataset includes the citation information provided by the data publisher. The provided sourceCitation may not include information about the primary provider (often the natural history collection) the specimen data originates and the catalogNumber should be referenced to understand the original source of the data.

If you know of a missing dataset, or wish to share your dataset, please contact us!

 

Metrics




Date


Total bee records



07-17-2020
232,906


01-24-2021
257,738


11-17-2021
226,160


06-01-2022
286,818


11-07-2022
429,308


01-18-2024
842,819


07-03-2024
1,109,057


01-09-2025
1,223,768




 




Date
Andrenidae
Apidae
Colletidae
Halictidae


07-17-2020
73,463
106,222
20,821
58,880


01-24-2021
77,824
120,919
21,376
63,945


11-17-2021
25,535
134,517
10,568
43,070


06-01-2022
78,016
144,827
20,409
64,054


11-07-2022
84,172
171,378
30,792
79,155


01-18-2024
166,473
334,224
63,847
171,931


07-03-2024


289,400



371,953



83,337



190,562



01-09-2025


204,565



686,195



70,724



241,856





 




Date
Megachilidae
Melittidae
Stenotritidae


07-17-2020
44,449
2,511
23


01-24-2021
48,856
2,624
18


11-17-2021
37,001
995
9


06-01-2022
54,516
2,994
18


11-07-2022
61,391
2,396
24


01-18-2024
100,814
5,088
442


07-03-2024


162,587



4,964

438


01-09-2025


126,113



5,928

441




 

Included files



filter_and_count_bee_families.sh - script for separating bee records into family and counting number of records for each family

citation-count.sh - script for counting citations

counts.sh - script for counting number of records per family

family_counts.tsv - counts by family

unique_citations.tsv - list of references/sources providing bee interaction data and the number of interactions provided by each reference

globi-bees-filtered_file.tsv.gz - list of all bee interaction data indexed on Global Biotic Interactions from GloBI version 2025-Jan-09 produced by [filter_and_count_bee_families.sh].

interactions.tsv.gz - archive of the full Global Biotic Interaction dataset on January 9, 2025. Downloaded from https://www.globalbioticinteractions.org


 

Interaction Sources




count
source


255946
USGS Biodiversity Information Serving Our Nation (BISON) IPT


203993




http://iNaturalist.org is a place where you can record what you see in nature, meet other nature lovers, and learn about the natural world.




113413




Digital Bee Collections Network, 2014 (and updates). Version: 2015-03-18. National Science Foundation grant DBI 0956388; PBI: Phytophagous Insects as a Model Group for Documenting Planetary Biodiversity (Insecta: Heteroptera: Miridae: Orthotylinae, Phylinae). Version: 08 Mar 2016. National Science Foundation grant DBI#0316495; Tri-Trophic Thematic Collection Network, 2014 (and updates). Version: 08 Mar 2016. http://tcn.amnh.org/. National Science Foundation grant(s) EF#1115081, EF#1115103, EF#1115080, EF#1115144, EF#1115191, EF#1115104, EF#1115115




111712
University of Kansas Natural History Museum


95131
ecdysis - a portal for live-managing arthropod occurrence data


74835
Symbiota Collections of Arthropods Network (SCAN)


62736
Frost Entomological Museum, Pennsylvania State University


28517
PaDIL Bee records from the Pests and Diseases Image Library, http://www.padil.gov.au.


27114




Guzman, Laura Melissa; Kelly, Tyler; Elle, Elizabeth, 2022, "A dataset for pollinator diversity and their interactions with plants in the Pacific NorthWest", https://doi.org/10.5683/SP3/WTEZNH, Borealis, V1




24564




University of Michigan Museum of Zoology Insect Division. Full Database Export 2020-11-20 provided by Erika Tucker and Barry Oconner.




23731




Carril OM, Griswold T, Haefner J, Wilson JS. (2018) Wild bees of Grand Staircase-Escalante National Monument: richness, abundance, and spatio-temporal beta-diversity. PeerJ 6:e5867 https://doi.org/10.7717/peerj.5867




18739




A. Thessen. 2014. Species associations extracted from EOL text data objects via text mining.




18003
Pensoft Darwin Core Archives available via Integrated Publication Toolkit


15754




Schwarz, Benjamin et al. (2021). Data from: Temporal scale-dependence of plant-pollinator networks [Dataset]. Dryad. https://doi.org/10.5061/dryad.qz612jmbp




10211
Pensoft Darwin Core Archives with associateTaxa columns


8752
Web of Life. http://www.web-of-life.es .


7590




Nick Balfour, Maria Clara Castellanos, Chris Johnson, Dave Goulson, Andrew Philippides. 2023. The Database of Pollinator Interactions (DoPI). Accessed at https://www.sussex.ac.uk/lifesci/ebe/dopi/ on 2023-12-01.




6367
Purdue Entomological Research Collection


6190




Redhead, J.W.; Coombes, C.F.; Dean, H.J.; Dyer, R.; Oliver, T.H.; Pocock, M.J.O.; Rorke, S.L.; Vanbergen, A.J.; Woodcock, B.A.; Pywell, R.F. (2018). Plant-pollinator interactions database for construction of potential networks. NERC Environmental Information Data Centre. https://doi.org/10.5285/6d8d5cb5-bd54-4da7-903a-15bd4bbd531b




5629
https://mangal.io - the ecological interaction database.


5451
University of Michigan Museum of Zoology, Division of Insects


5316




Clint Otto, Russ Bryant, and Ned H. Euliss Jr., 2020, The U.S. Geological Survey Pollinator Library Dataset: U.S. Geological Survey. https://doi.org/10.5066/P9DSS3VL




5297
Eardley C, Coetzer W. 2016. Catalogue of Afrotropical Bees.


4700
University of Colorado Museum of Natural History Entomology Collection


4684




National Database Plant Pollinators. Center for Plant Conservation at San Diego Zoo Global. Accessed via https://saveplants.org/national-collection/pollinator-search/ on 2020-06-05.




4557




Allen-Perkins, Alfonso, Magrach, Ainhoa, Dainese, Matteo, Garibaldi, Lucas A., Kleijn, David, Rader, Romina, Reilly, James R., et al. 2022. "CropPol: A Dynamic, Open and Global Database on Crop Pollination." Ecology 103(3): e3614. https://doi.org/10.1002/ecy.3614




4502




Natural History Collections managed by Arctos (https://arctosdb.org) accessed via https://vertnet.org .




4243




Seltmann, K., Van Wagner, J., Behm, R., Brown, Z., Tan, E., & Liu, K. (2020). BID: A project to share biotic interaction and ecological trait data about bees (Hymenoptera: Anthophila). UC Santa Barbara: Cheadle Center for Biodiversity and Ecological Restoration. Retrieved from https://escholarship.org/uc/item/1g21k7bf




3709
Arizona State University Hasbrouck Insect Collection


3630
Mycology Collections Data Portal (MyCoPortal). https://mycoportal.org


3590




Maiorano, L., Montemaggiori, A., Ficetola, G.F., O’Connor, L. & Thuiller, W. (2020), Data from: Tetra-EU 1.0: a species-level trophic meta-web of European tetrapods, Dryad, Dataset, https://doi.org/10.5061/dryad.jm63xsj7b




3552




Fricke, E.C., Svenning, J. Accelerating homogenization of the global plant–frugivore meta-network. Nature 585, 74–78 (2020). https://doi.org/10.1038/s41586-020-2640-y




3140
University of New Hampshire Collection of Insects and other Arthropods UNHC-UNHC


3124




CaraDonna, P.J. 2020. Temporal variation in plant-pollinator interactions, Rocky Mountain Biological Laboratory, CO, USA, 2013 - 2015 ver 1. Environmental Data Initiative. https://doi.org/10.6073/pasta/27dc02fe1655e3896f20326fed5cb95f (Accessed 2021-04-16).




3121




LaManna, JA, Burkle, LA, Belote, RT, Myers, JA. Biotic and abiotic drivers of plant–pollinator community assembly across wildfire gradients. J Ecol. 2020; 00: 1– 14. https://doi.org/10.1111/1365-2745.13530 .




3041




Ollerton, J., Trunschke, J. ., Havens, K. ., Landaverde-González, P. ., Keller, A. ., Gilpin, A.-M. ., Rodrigo Rech, A. ., Baronio, G. J. ., Phillips, B. J., Mackin, C. ., Stanley, D. A., Treanore, E. ., Baker, E. ., Rotheray, E. L., Erickson, E. ., Fornoff, F. ., Brearley, F. Q. ., Ballantyne, G. ., Iossa, G. ., Stone, G. N., Bartomeus, I. ., Stockan, J. A., Leguizamón, J., Prendergast, K. ., Rowley, L., Giovanetti, M., de Oliveira Bueno, R., Wesselingh, R. A., Mallinger, R., Edmondson, S., Howard, S. R., Leonhardt, S. D., Rojas-Nossa, S. V., Brett, M., Joaqui, T., Antoniazzi, R., Burton, V. J., Feng, H.-H., Tian, Z.-X., Xu, Q., Zhang, C., Shi, C.-L., Huang, S.-Q., Cole, L. J., Bendifallah, L., Ellis, E. E., Hegland, S. J., Straffon Díaz, S., Lander, T. A. ., Mayr, A. V., Dawson, R. ., Eeraerts, M. ., Armbruster, W. S. ., Walton, B. ., Adjlane, N. ., Falk, S. ., Mata, L. ., Goncalves Geiger, A. ., Carvell, C. ., Wallace, C. ., Ratto, F. ., Barberis, M. ., Kahane, F. ., Connop, S. ., Stip, A. ., Sigrist, M. R. ., Vereecken, N. J. ., Klein, A.-M., Baldock, K. ., & Arnold, S. E. J. . (2022). Pollinator-flower interactions in gardens during the COVID-19 pandemic lockdown of 2020. Journal of Pollination Ecology, 31, 87–96. https://doi.org/10.26786/1920-7603(2022)695




2823
Robert L. Minckley San Bernardino Valley from the year 2000 to 2011.


2757




Harvard University M, Morris P J (2021). Museum of Comparative Zoology, Harvard University. Museum of Comparative Zoology, Harvard University.




2038




Sarah E. Miller. 07/06/2017. Information extracted from dataset https://www.idigbio.org/portal/recordsets/db4bb0df-8539-4617-ab5f-eb118aa3126b.




1681




Klompen H, Johnson N (2018). Ohio State Acarology Laboratory (OSAL), Ohio State University. Museum of Biological Diversity, The Ohio State University. Accessed via https://mbd-db.osu.edu/hol/taxon_name/05fbf4bb-f8e1-404e-a27c-759d345aa4d0 on 2023-11-06 hash://sha256/fb23140e60f4889de35ae174b2570cf294012bff4f2c8c419c292af51c98c25f




1619




Grundler MC (2020) SquamataBase: a natural history database and R package for comparative biology of snake feeding habits. Biodiversity Data Journal 8: e49943. https://doi.org/10.3897/BDJ.8.e49943




1522




Brose, U. (2018). GlobAL daTabasE of traits and food Web Architecture (GATEWAy) version 1.0 [Data set]. German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig. https://doi.org/10.25829/IDIV.283-3-756




1430




Sarah E Miller. 6/19/2015. Species associations manually extracted from datasets https://www.nceas.ucsb.edu/interactionweb/resources.html.




1126




Giselle Muschett & Francisco E. Fontúrbel. 2021. A comprehensive catalogue of plant – pollinator interactions for Chile




1091




Magrach, Ainhoa et al. (2017), Data from: Plant-pollinator networks in semi-natural grasslands are resistant to the loss of pollinators during blooming of mass-flowering crops, Dryad, Dataset, https://doi.org/10.5061/dryad.k0q1n




1057




Sarah E Miller. 4/18/2016. Species associations from Wardeh, M. et al. Database of host-pathogen and related species interactions, and their global distribution. Sci. Data 2:150049 doi: 10.1038/sdata.2015.49 (2015)




1057




Wardeh, M., Risley, C., McIntyre, M. et al. Database of host-pathogen and related species interactions, and their global distribution. Sci Data 2, 150049 (2015). https://doi.org/10.1038/sdata.2015.49




1034




Cohen JM, Sauer EL, Santiago O, Spencer S, Rohr JR. 2020. Divergent impacts of warming weather on wildlife disease risk across climates. Science. doi:10.1126/science.abb1702




953
Sarah E Miller. 5/30/2016. Interations from various papers.


929
University of California Santa Barbara Invertebrate Zoology Collection


870




Del Risco, A.A., Montoya, Á.M., García, V. et al. Data synthesis and dynamic visualization converge into a comprehensive biotic interaction network: a case study of the urban and rural areas of Bogotá D.C.. Urban Ecosyst (2021). https://doi.org/10.1007/s11252-021-01133-3




855




The International Barcode of Life Consortium (2016). International Barcode of Life project (iBOL). Occurrence dataset https://doi.org/10.15468/inygc6




847




Ed Baker; Ian J. Kitching; George W. Beccaloni; Amoret Whitaker et al. (2016). Dataset: NHM Interactions Bank. Natural History Museum Data Portal (data.nhm.ac.uk). https://doi.org/10.5519/0060767




794




Poelen, J. H. (2024). A biodiversity dataset graph: Biological Associations in TaxonWorks hash://sha256/e4a47c067d6c125da60c9a1b92b5eecdea539cb8666cd3aed99db347ae5b8ed0 hash://md5/686007de79cc2a49ab23fd3debe56e3f [Data set]. Zenodo. https://doi.org/10.5281/zenodo.11151783




770
Florida State Collection of Arthropods


759
Illinois Natural History Survey Insect Collection


711
Texas A&M University Insect Collection


638




Scott L. Gardner and Gabor R. Racz (2021). University of Nebraska State Museum - Parasitology. Harold W. Manter Laboratory of Parasitology. University of Nebraska State Museum.




634




Classen, Alice; Steffan-Dewenter, Ingolf (2020): Plant-pollinator interactions along an elevational gradient on Mt. Kilimanjaro. PANGAEA, https://doi.org/10.1594/PANGAEA.911390




616
A review of the status of web-based African Plant-Pollinator Interaction data.


609




Ollerton J, Liede-Schumann S, Endress ME, Meve U, Rech AR, Shuttleworth A, Keller HA, Fishbein M, Alvarado-Cárdenas LO, Amorim FW, Bernhardt P, Celep F, Chirango Y, Chiriboga-Arroyo F, Civeyrel L, Cocucci A, Cranmer L, da Silva-Batista IC, de Jager L, Deprá MS, Domingos-Melo A, Dvorsky C, Agostini K, Freitas L, Gaglianone MC, Galetto L, Gilbert M, González-Ramírez I, Gorostiague P, Goyder D, Hachuy-Filho L, Heiduk A, Howard A, Ionta G, Islas-Hernández SC, Johnson SD, Joubert L, Kaiser-Bunbury CN, Kephart S, Kidyoo A, Koptur S, Koschnitzke C, Lamborn E, Livshultz T, Machado IC, Marino S, Mema L, Mochizuki K, Morellato LPC, Mrisha CK, Muiruri EW, Nakahama N, Nascimento VT, Nuttman C, Oliveira PE, Peter CI, Punekar S, Rafferty N, Rapini A, Ren ZX, Rodríguez-Flores CI, Rosero L, Sakai S, Sazima M, Steenhuisen SL, Tan CW, Torres C, Trøjelsgaard K, Ushimaru A, Vieira MF, Wiemer AP, Yamashiro T, Nadia T, Queiroz J, Quirino Z. The diversity and evolution of pollination systems in large plant clades: Apocynaceae as a case study. Ann Bot. 2019 Jan 23;123(2):311-325. doi: 10.1093/aob/mcy127. PMID: 30099492; PMCID: PMC6344220.




590
National Museum of Natural History, Smithsonian Institution IPT RSS Feed


558




Sarah E Miller. 6/22/2015. Species associations manually extracted from datasets https://www.nceas.ucsb.edu/interactionweb/resources.html.




544




Pardee, G.L., Ballare, K.M., Neff, J.L., Do, L.Q., Ojeda, D., Bienenstock, E.J., Brosi, B.J., Grubesic, T.H., Miller, J.A., Tong, D. and Jha, S., 2023. Local and Landscape Factors Influence Plant-Pollinator Networks and Bee Foraging Behavior across an Urban Corridor. Land, 12(2), p.362. https://www.mdpi.com/2073-445X/12/2/362




493
RCPol: Online Pollen Catalogs Network. 2016. https://rcpol.org.br/


484




Hurlbert, A. H., Olsen, A. M., Sawyer, M. M., and Winner, P. M. 2021. Avian Diet Database. https://doi.org/10.5281/zenodo.5151056




450




Sarah E Miller. 6/25/2015. Species associations manually extracted from Robertson, C. 1929. Flowers and insects: lists of visitors to four hundred and fifty-three flowers. Carlinville, IL, USA, C. Robertson.




437
The Albert J. Cook Arthropod Research Collection


293




Global Web Database (http://globalwebdb.com): an online collection of food webs. Accessed via https://www.globalwebdb.com/Service/DownloadArchive on 2017-10-12.




290




Sarah E Miller. 06/10/2015. Species associations manually extracted from Chamberlin, W. J. The Buprestidae of North America, Exclusive of Mexico, a Catalogue including Synonomy, Bibliography, Distribution, Type Locality and Hosts of Each Species,. 1926.




282




BENSCH, S., HELLGREN, O. and PÉREZ‐TRIS, J. (2009), MalAvi: a public database of malaria parasites and related haemosporidians in avian hosts based on mitochondrial cytochrome b lineages. Molecular Ecology Resources, 9: 1353-1358. https://doi.org/10.1111/j.1755-0998.2009.02692.x




271
California Academy of Sciences Entomology and Entomology Type Collection


263




Food Webs and Species Interactions in the Biodiversity of UK and Ireland (Online). 2017. Data provided by Malcolm Storey. Also available from http://bioinfo.org.uk.




262




Canterbury Museum. (2024). Canterbury Museum (CMNZ) collection insect specimen-plant flower interactions (0.2) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.11694302




248
WorldFAIR pilot data from: VisitationData_Luisa_Carvalheiro.


248
http://invertebrates.si.edu/parasites.htm


245




Eneida L. Hatcher, Sergey A. Zhdanov, Yiming Bao, Olga Blinkova, Eric P. Nawrocki, Yuri Ostapchuck, Alejandro A. Schäffer, J. Rodney Brister, Virus Variation Resource – improved response to emergent viral outbreaks, Nucleic Acids Research, Volume 45, Issue D1, January 2017, Pages D482–D490, https://doi.org/10.1093/nar/gkw1065 .




213




Groom, Q.J., Maarten De Groot, M. & Marčiulynienė, D. (2020) Species interation data manually extracted from literature for species .




205




@article{Sabino_2022, doi = {10.1016/j.agee.2022.108012}, url = {https://doi.org/10.1016%2Fj.agee.2022.108012}, year = 2022, month = {sep}, publisher = {Elsevier {BV}}, volume = {335}, pages = {108012}, author = {William Sabino and Luciano Costa and Tamires Andrade and Juliana Teixeira and Gustavo Araújo and André Luís Acosta and Luísa Carvalheiro and Tereza Cristina Giannini}, title = {Status and trends of pollination services in Amazon agroforestry systems}, journal = {Agriculture, Ecosystems & Environment}}




201
University of Hawaii Insect Museum


182




Palomares, M.L.D. and D. Pauly. Editors. 2018. SeaLifeBase. World Wide Web electronic publication. www.sealifebase.org, version (10/2018).




181
Brigham Young University Arthropod Museum


181




Stokland, J.; Dahlberg, A.; Meyke, E.; Schigel, D.; Siitonen, J. (2006) The Nordic saproxylic database - a comprehensive overview of the biological diversity in dead wood. 1st European Congress of Conservation Biology - "Diversity for Europe". August 2006, Hungary. Book of Abstracts. Society of Conservation Biology (USA) & Blackwell Publishing (UK) p. 159 .




164




Stephens, P. R., Pappalardo, P. , Huang, S. , Byers, J. E., Farrell, M. J., Gehman, A. , Ghai, R. R., Haas, S. E., Han, B. , Park, A. W., Schmidt, J. P., Altizer, S. , Ezenwa, V. O. and Nunn, C. L. (2017), Global Mammal Parasite Database version 2.0. Ecology, 98: 1476-1476. doi:10.1002/ecy.1799




143
Allen Hurlbert. 2017. Avian Diet Database.


134




Bartomeus, Ignasi (2013): Plant-Pollinator Network Data. figshare. Dataset. https://doi.org/10.6084/m9.figshare.154863.v1




133




Sarah E Miller. 12/13/2016. Species associations manually extracted from Onstad, D.W. EDWIP: Ecological Database of the World's Insect Pathogens. Champaign, Illinois: Illinois Natural History Survey, [23/11/2016]. http://insectweb.inhs.uiuc.edu/Pathogens/EDWIP.




129
Yale University Peabody Museum Collections Data Portal


128




Llewelyn, J., Strona, G., Dickman, C.R., Greenville, A.C., Wardle, G.M., Lee, M.S.Y., Doherty, S., Shabani, F., Saltré, F. and Bradshaw, C.J.A. (2023), Predicting predator–prey interactions in terrestrial endotherms using random forest. Ecography e06619. https://doi.org/10.1111/ecog.06619




124
Field Museum of Natural History IPT


120




Shaw, LP, Wang, AD, Dylus, D, et al. The phylogenetic range of bacterial and viral pathogens of vertebrates. Mol Ecol. 2020; 29: 3361– 3379. https://doi.org/10.1111/mec.15463




119




Species Interactions of Australia Database (SIAD): Helping us to understand species interactions in Australia and beyond. http://www.discoverlife.org/siad/ .




118
WIRC / University of Wisconsin Madison WIS-IH / Wisconsin Insect Research Collection


100




Carlson, C.J. et al., 2021. The Global Virome in One Network (VIRION): an atlas of vertebrate-virus associations. Available at: http://dx.doi.org/10.1101/2021.08.06.455442




99




Mihara, T., Nishimura, Y., Shimizu, Y., Nishiyama, H., Yoshikawa, G., Uehara, H., Hingamp, P., Goto, S., and Ogata, H.; Linking virus genomes with host taxonomy. Viruses 8, 66 doi:10.3390/v8030066 (2016).




92




Brose, U. et al., 2005. Body sizes of consumers and their resources. Ecology, 86(9), pp.2545–2545. Available at: https://doi.org/10.1890/05-0379.




92
San Diego Natural History Museum


79




Cristina Preda and Quentin Groom. 2014. Species associations manually extracted from literature.




66
US National Museum of Natural History Ixodes Records


57




Farr, David F.; Rossman, Amy Y.; Castlebury, Lisa A. (2021). United States National Fungus Collections Fungus-Host Dataset. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1524414.




53




Lintulaakso, K., Tatti, N. and Žliobaitė, I., 2023. Quantifying mammalian diets. Mammalian Biology, 103(1), pp.53-67. https://doi.org/10.1007/s42991-022-00323-6




53




Soleto-Casas RC and Simões N (2020). Parasitic and commensal invertebrates of echinoderms from American Tropical And Subtropical Atlantic manually extracted from literature.




51




Froese, R. and D. Pauly. Editors. 2018. FishBase. World Wide Web electronic publication. www.fishbase.org, version (10/2018).




45




Olito, Colin; Fox, Jeremy W. (2015), Data from: Species traits and abundances predict metrics of plant–pollinator network structure, but not pairwise interactions, Dryad, Dataset, https://doi.org/10.5061/dryad.7st32




43
Price Institute of Parasite Research, School of Biological Sciences, University of Utah


40




Sarah E Miller. 9/19/2017. Species associations manually extracted from Benesh, D. P., Lafferty, K. D. and Kuris, A. (2017), A life cycle database for parasitic acanthocephalans, cestodes, and nematodes. Ecology, 98: 882. doi:10.1002/ecy.1680




38
http://gomexsi.tamucc.edu


37




Pocock, Michael J. O.; Evans, Darren M.; Memmott, Jane (2012), Data from: The robustness and restoration of a network of ecological networks, Dryad, Dataset, https://doi.org/10.5061/dryad.3s36r118




36




Quentin J. Groom. 2020. Species interactions of species on the List of invasive alien species of Union concern




36
University of Wisconsin Stevens Point, Stephen J. Taft Parasitological Collection


34
Museum for Southwestern Biology (MSB) Parasite Collection


34




Sarah E Miller. 6/20/2015. Species associations manually extracted from datasets https://www.nceas.ucsb.edu/interactionweb/resources.html.




32




Ballantyne, Gavin; Baldock, Katherine C. R.; Willmer, Pat G. (2015), Data from: Constructing more informative plant-pollinator networks: visitation and pollen deposition networks in a heathland plant community, Dryad, Dataset, https://doi.org/10.5061/dryad.17pp3




29




Sarah E Miller. 5/17/2016. Wenzel, Rupert L., and Vernon J. Tipton. Appendix: Classified List of Hosts and Parasites. Chicago, Ill.: Field Museum of Natural History, 1966.




26




Sarah E Miller. 9/19/2016. Species associations extracted from Graystock, P., Blane, E.J., McFrederick, Q.S., Goulson, D. and Hughes, W.O., 2016. Do managed bees drive parasite spread and emergence in wild bees?. International Journal for Parasitology: Parasites and Wildlife, 5(1), pp.64-75.




25
Bernice Pauahi Bishop Museum, J. Linsley Gressitt Center for Research in Entomology


23




Agosti, Donat. 2020. Transcription of Linné, C. von, 1758. Systema naturae per regna tria naturae secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Available at: http://dx.doi.org/10.5962/bhl.title.542 .




23




Sherman, Aja C.; Geiselman, Cullen; Simons, Nancy B.; Upham, Nathan S.; Poelen, Jorrit H.; Reeder, DeeAnn M.; Bertolino, Sandro; Groom, Quentin; Phelps, Kendra; Agosti, Donat; Willoughby, Anna R. In Preparation. Bat-Co-Roosting Database develop by the Biodiversity-related knowledge hub on COVID-19.




23




Udy, Kristy; Reininghaus, Hannah; Scherber, Christoph; Tscharntke, Teja (2020), Data from: Plant-pollinator interactions along an urbanization gradient from cities and villages to farmland landscapes, Dryad, Dataset, https://doi.org/10.5061/dryad.4mw6m906s




20




IPBES. (2016). The assessment report of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services on pollinators, pollination and food production. Table 2.4.3 p88 Zenodo. https://doi.org/10.5281/zenodo.3402857




19




Seltzer, Carrie; Wysocki, William; Palacios, Melissa; Eickhoff, Anna; Pilla, Hannah; Aungst, Jordan; Mercer, Aaron; Quicho, Jamie; Voss, Neil; Xu, Man; J. Ndangalasi, Henry; C. Lovett, Jon; J. Cordeiro, Norbert (2015): Plant-animal interactions from Africa. figshare. https://dx.doi.org/10.6084/m9.figshare.1526128




18




Jakovos Demetriou and Quentin Groom 2014. Species associations of Sceliphron manually extracted from literature.




17
Species Connect. https://speciesconnect.com


14




Fabricia Sousa Paz, Carlos Eduardo Pinto, Rafael Melo de Brito, Vera Lucia Imperatriz-Fonseca, Tereza Cristina Giannini, Edible Fruit Plant Species in the Amazon Forest Rely Mostly on Bees and Beetles as Pollinators, Journal of Economic Entomology, Volume 114, Issue 2, April 2021, Pages 710–722, https://doi.org/10.1093/jee/toaa284




14




Raymond, B., Marshall, M., Nevitt, G., Gillies, C., van den Hoff, J., Stark, J.S., Losekoot, M., Woehler, E.J., and Constable, A.J. (2011) A Southern Ocean dietary database. Ecology 92(5):1188. Available from http://dx.doi.org/10.1890/10-1907.1 . Data set supplied by Ben Raymond.




14




Scientific Committee on Antarctic Research. (2023). SCAR Southern Ocean Diet and Energetics Database (2023-04-04) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7796465 hash://md5/e41e29d8fb3c2d731f292ec08798cf6b hash://md5/05abf23c0b9e5f4bc721ff407455af0a hash://sha256/7a344b858ab8d1daeca1da49843e8bf957f1116ff9e10a29176ab5c02cb49bef




13




Geiselman, Cullen K. & Sarah Younger. 2020. Bat Eco-Interactions Database. www.batbase.org




12




Gaden S. Robinson; Phillip R. Ackery; Ian Kitching; George W Beccaloni; Luis M. Hernández (2023). HOSTS (from HOSTS - a Database of the World's Lepidopteran Hostplants) [Data set resource]. Natural History Museum. https://data.nhm.ac.uk/dataset/hosts/resource/877f387a-36a3-486c-a0c1-b8d5fb69f85a via Natural History Museum (2023). Data Portal query on 1 resources created at 2023-05-24 11:19:42.032183 PID https://doi.org/10.5519/qd.bsucrxdz




12




Gandhi, K. J. K., & Herms, D. A. (2009). North American arthropods at risk due to widespread Fraxinus mortality caused by the Alien Emerald ash borer. Biological Invasions, 12(6), 1839–1846. doi:10.1007/s10530-009-9594-1.




12




Meyer R.S., et al., Beach environmental DNA fills gaps in photographic biomonitoring to track spatiotemporal community turnover across 82 phyla. Environmental DNA, submitted June 3, 2019.




9
Consortium of Small Vertebrate Collections


9




Urban M, Cuzick A, Rutherford K, Irvine A, Pedro H, Pant R, Sadanadan V, Khamari L, Billal S, Mohanty S, Hammond-Kosack KE. PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database. Nucleic Acids Res. 2017 Jan 4;45(D1):D604-D610. doi: 10.1093/nar/gkw1089. Epub 2016 Dec 3. PMID:27915230




8
Sarah E Miller. 7/6/2016. Arctos collection.


5




International Council for the Exploration of the Sea (ICES). Year of The Stomach Datasets.




4




Sarah E Miller. 4/20/2015. Species associations manually extracted from various papers and articles from site https://repository.si.edu




4




Sarah E Miller. 5/28/2015. Arnaud, Paul Henri. A Host-parasite Catalog of North American Tachinidae (Diptera). Washington, D.C.: U.S. Dept. of Agriculture, Science and Education Administration, 1978.




4




Sarah E Miller. 7/7/2016. Text gathered from Wirta, H.K., Vesterinen, E.J., Hambäck, P.A., Weingartner, E., Rasmussen, C., Reneerkens, J., Schmidt, N.M., Gilg, O. and Roslin, T., 2015. Exposing the structure of an Arctic food web. Ecology and evolution, 5(17), pp.3842-3856.




4




Semantic Prototypes in Research Ecoinformatics (SPIRE). Data provided by Joel Sachs. See also http://ebiquity.umbc.edu/get/a/publication/297.pdf .




4
University of California Santa Barbara Herbarium


3




Geiselman, Cullen K. and Tuli I. Defex. 2015. Bat Eco-Interactions Database. www.batplant.org




3




Gippet, J.M.W., Bates, O.K., Moulin, J. et al. The global risk of infectious disease emergence from giant land snail invasion and pet trade. Parasites Vectors 16, 363 (2023). https://doi.org/10.1186/s13071-023-06000-y




3




Jorrit H. Poelen. 2017. Species interactions associated with known species interaction datasets.




3
Ministerio del Ambiente, Agua y Transición Ecológica de Ecuador - MAATE.


3




Sarah E Miller. 9/15/2016. Species associations extracted from http://parasiticplants.siu.edu/index.html.




3
Sarah E Miller. 9/3/2015. Species associations manually extracted from JSTOR.


3




Schriml, L. M., Arze, C., Nadendla, S., Ganapathy, A., Felix, V., Mahurkar, A., … Hall, N. (2009). GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database. Nucleic Acids Research, 38(Database), D754–D764. doi:10.1093/nar/gkp832




2
Carnegie Invertebrate Zoology Collection


2




F. Gabriel. Muñoz. 2017. Palm-Animal frugivore associations extracted from literature with Biodiversity Observations Miner for SouthEast Asia.




2




Ferrer-Paris, José R.; Sánchez-Mercado, Ada Y.; Lozano, Cecilia; Zambrano, Liset; Soto, José; Baettig, Jessica; Leal, María (2014): A compilation of larval host-plant records for six families of butterflies (Lepidoptera: Papilionoidea) from available electronic resources. figshare. http://dx.doi.org/10.6084/m9.figshare.1168861




2




Paleo Digitization Working Group. Biological associations extracted from fossil specimens.




2
Quentin J. Groom. 2020. Bat interation data manually extracted from literature.


2




Sarah E. Miller. 04/14/2015. Extracted from literature Scott, J.A. 1986.  The Butterflies of North America.  Stanford University Press, Stanford, CA




2




Strona, G., Palomares, M. L. D., Bailly, N., Galli, P., & Lafferty, K. D. (2013). Host range, host ecology, and distribution of more than 11 800 fish parasite species. Ecology, 94(2), 544–544. doi:10.1890/12-1419.1




2
Thessen AE. 2017. Biotic Interactions in Greenland. GloBI. 10.5281/zenodo.266824


1




Bourlat SJ, Koch M, Kirse A, Langen K, Espeland M, Giebner H, Decher J, Ssymank A, Fonseca VG (2023) Metabarcoding dietary analysis in the insectivorous bat Nyctalus leisleri and implications for conservation. Biodiversity Data Journal 11: e111146. https://doi.org/10.3897/BDJ.11.e111146




1




De Rojas M, Doña J, Dimov I (2020) A comprehensive survey of Rhinonyssid mites (Mesostigmata: Rhinonyssidae) in Northwest Russia: New mite-host associations and prevalence data. Biodiversity Data Journal 8: e49535. https://doi.org/10.3897/BDJ.8.e49535




1




Deans, Andrew (2021). Catalog of Rose Gall, Herb Gall, and Inquiline Gall Wasps (Hymenoptera: Cynipidae) of the United States, Canada, and Mexico




1




Gunther KA et al. 2014 Dietary breadth of grizzly bears in the Greater Yellowstone Ecosystem. Ursus 25(1):60-72




1
HiveTracks WorldFAIR Test Data.


1




Pinnegar, J.K. (2014). DAPSTOM - An Integrated Database & Portal for Fish Stomach Records. Version 4.7. Centre for Environment, Fisheries & Aquaculture Science, Lowestoft, UK. February 2014, 39pp.




1




Sarah E Miller. 3/4/2015. Species associations manually extracted from http://onlinelibrary.wiley.com/doi/10.1111/j.1474-919X.2009.00907.x/suppinfo.




1
Sarah E Miller. 5/21/2015. Text gathered from http://www.biodiversitylibrary.org/


1




Vanderweyen A, Fraiture A, Groom Q, Desmet P, Reyserhove L (2019). Catalogue of the Rust Fungi of Belgium. Botanic Garden Meise.




1




Vanderweyen, A., & Fraiture, A. (2009). Catalogue des Uredinales de Belgique, 1re partie, Chaconiaceae, Coleosporiaceae, Cronartiaceae, Melampsoraceae, Phragmidiaceae, Pucciniastraceae, Raveneliaceae et Uropyxidaceae. Lejeunia, Revue de Botanique|Vanderweyen, A., & Fraiture, A. (2009). Catalogue des Uredinales de Belgique, 2ème partie, Pucciniaceae (sauf Puccinia)(suite 2). Lejeunia, Revue de Botanique.|Vanderweyen, A., & Fraiture, A. (2012). CATALOGUE DES UREDINALES DE Belgique 3ème partie Pucciniaceae (genre Puccinia). Lejeunia, Revue de Botanique.




1
Zeke Marshall. 2021. Species interactions manually extracted from literature.


 
 




References

Poelen JH, Simons JD, Mungall CJ (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2014.08.005

Seltmann KC, Allen J, Brown BV, Carper A, Engel MS, Franz N, Gilbert E, Grinter C, Gonzalez VH, Horsley P, Lee S, Maier C, Miko I, Morris P, Oboyski P, Pierce NE, Poelen J, Scott VL, Smith M, Talamas EJ, Tsutsui ND, Tucker E (2021) Announcing Big-Bee: An initiative to promote understanding of bees through image and trait digitization. Biodiversity Information Science and Standards 5: e74037. https://doi.org/10.3897/biss.5.74037

Poelen, JS & Seltmann, KS (2024) Bees Only Please: Bees Only Please: Selecting Hundreds of Thousands of Possible Bee Interactions Using a Laptop, Open Datasets, and Small (but Mighty) Commandline Tools. https://www.globalbioticinteractions.org/2024/06/07/bees-only-please

Ascher, J. S. and J. Pickering (2020) Discover Life bee species guide and world checklist (Hymenoptera: Apoidea: Anthophila). http://www.discoverlife.org/mp/20q?guide=Apoidea_species.

Acknowledgements

This project is supported by the National Science Foundation. Award numbers: DBI:2102006, DBI:2101929, DBI:2101908, DBI:2101876, DBI:2101875, DBI:2101851, DBI:2101345, DBI:2101913, DBI:2101891 and DBI:2101850 
description: Please cite the resources, natural history collections and publications where the data originated as found in uniq_citations.tsv file above. Also, please cite Poelen et. al (above in References) to cite Global Biotic Interactions.