cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26180/27289017.v1
title: mirrorCheck results for 4 public datasets

description: Each zipped folder contains results files from reanalysis of public data in our publication, "mirrorCheck: an R package facilitating informed use of DESeq2’s lfcShrink() function for differential gene expression analysis of clinical samples" (see also the Collection description).These files were produced by rendering the Quarto documents provided in the supplementary data with the publication (one per dataset). The Quarto codes for the 3 main analyses (COVID, BRCA and Cell line datasets) performed differential gene expression (DGE) analysis using both DESeq2 with lfcShrink() via our R package mirrorCheck, and also edgeR. Each zipped folder here contains 2 folders, one for each DGE analysis. Since DESeq2 was run on data without prior data cleaning, with prefiltering or after Surrogate Variable Analysis, the 'mirrorCheck output' folders themselves contain 3 sub-folders titled 'DESeq_noclean', 'DESeq_prefilt' and 'DESeq_sva". The COVID dataset also has a folder with results from Gene Set Enrichment Analysis. Finally, the fourth folder contains results from a tutorial/vignette-style supplementary file using the Bioconductor "parathyroidSE" dataset. This analysis only utilised DESeq2, with both data cleaning methods and testing two different design formulae, resulting in 5 sub-folders in the zipped folder.
DOI: 10.15468/dl.swgm88
title: Occurrence Download

description: A dataset containing 23150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmognathus fuscus (Rafinesque, 1820)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 23150 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003182-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ahazkq
title: Occurrence Download

description: A dataset containing 1966 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
}

 The dataset includes 1966 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003183-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.arsb55
title: Occurrence Download

description: A dataset containing 12772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmognathus monticola Dunn, 1916",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12772 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003184-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ub8a9m
title: Occurrence Download

description: A dataset containing 14958 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Exploration of soil bacterial diversity in organic and conventional agriculture fields in Sri Lanka"
 ]
}

 The dataset includes 14958 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003185-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gsf63w
title: Occurrence Download

description: A dataset containing 774 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmognathus welteri Barbour, 1950",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 774 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003186-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujjchh
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dicamptodon copei Nussbaum, 1970",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 228 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003187-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22008/fk2/ebrya2/sqcbe6
title: Quinisut_77_V2N.pdf

description: :unav
DOI: 10.15468/dl.2k9dcx
title: Occurrence Download

description: A dataset containing 2748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dicamptodon ensatus (Eschscholtz, 1833)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2748 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003188-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7cdu2h
title: Occurrence Download

description: A dataset containing 4865 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dicamptodon tenebrosus (Baird & Girard, 1852)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4865 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003189-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15093317
title: SHRED Running Dataset and Results
DOI: 10.5281/zenodo.15093318
title: SHRED Running Dataset and Results
DOI: 10.21227/nx0k-h521
title: Feni Solar-Wind Data

description: This dataset contains high-resolution solar and wind measurement data collected from the Feni region, Bangladesh, spanning from 2017 to 2019. Logged at a 1-minute interval, the dataset provides a comprehensive record of atmospheric and meteorological conditions, essential for renewable energy analysis, climatological studies, and resource assessment.The dataset includes wind data from multiple anemometers and wind vanes, along with solar radiation components such as Direct Normal Irradiance (DNI), Global Horizontal Irradiance (GHI), and Diffuse Horizontal Irradiance (DHI). Additionally, it records temperature, humidity, pressure, precipitation, and sun elevation parameters. Quality flags are included for each measured parameter to ensure data reliability.Key Features of the Dataset:Temporal Resolution: 1-minute data loggingWind Parameters: Wind speed (average & max) from multiple anemometers, wind direction from vanesSolar Parameters: DNI, GHI, DHI, and Global Tilted Irradiance (GTI)Environmental Parameters: Temperature (air & reference cells), relative humidity, pressure, precipitationQuality Control: Flags indicating data integrityPotential Applications:Wind and Solar Energy Assessment: Evaluation of hybrid renewable energy potentialMeteorological and Climate Studies: Analysis of atmospheric variations over timeGrid Integration & Forecasting: Data-driven insights for power grid stabilityThe dataset is provided as a comma-delimited CSV file (.csv), where each column represents a specific measurement tag. Users can access detailed data tag information within the file to interpret each parameter correctly. This dataset serves as a valuable resource for researchers, engineers, and policymakers focusing on Bangladesh’s renewable energy sector and atmospheric science.
DOI: 10.15468/dl.u952ar
title: Occurrence Download

description: A dataset containing 6150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Discoglossus pictus Otth, 1837",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6150 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003190-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/5q5x-ka28
title: Ha-OIII Correlation

description: For the paper on Ha-OIII correlation.
DOI: 10.5281/zenodo.15093207
title: GBS data from: Genetic Diversity of Indigenous Rice Varieties Cultivated by Mon-Khmer-Speaking Ethnic Communities in Thailand

description: Genotype-by-sequencing data from 100 rice seed samples collected from 11 Mon-Khmer communities in Northern Thailand were generated by Illumina NovaSeq6000 platform. Biallelic variants were called relative to the Oryza sativa Japonica Group (Japanese rice) genome assembly IRGSP-1.0 from the National Institute of Agrobiological Sciences. SNPs were filtered with a quality score (QUAL) > 30% and a depth of coverage (DP) > 10%.
DOI: 10.5281/zenodo.15093208
title: GBS data from: Genetic Diversity of Indigenous Rice Varieties Cultivated by Mon-Khmer-Speaking Ethnic Communities in Thailand

description: Genotype-by-sequencing data from 100 rice seed samples collected from 11 Mon-Khmer communities in Northern Thailand were generated by Illumina NovaSeq6000 platform. Biallelic variants were called relative to the Oryza sativa Japonica Group (Japanese rice) genome assembly IRGSP-1.0 from the National Institute of Agrobiological Sciences. SNPs were filtered with a quality score (QUAL) > 30% and a depth of coverage (DP) > 10%.
DOI: 10.15468/dl.cau94c
title: Occurrence Download

description: A dataset containing 11173946 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 2020-2025"
 ]
}

 The dataset includes 11173946 records from 286 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003170-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.up8j9t
title: Occurrence Download

description: A dataset containing 10793 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dryophytes arenicolor (Cope, 1866)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10793 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003191-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/mzqy-r528
title: Analyzing Ha-OIII Correlation

description: For the article named "A Mysteriously Tight Hα-[O III] Correlation and Non-Case B Balmer Decrements1
Revealed by the Spectra from the James Webb Space Telescope NIRSpec Instrument"
DOI: 10.15468/dl.jhkrfu
title: Occurrence Download

description: A dataset containing 14322766 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "Geometry POLYGON((-77.63655 -0.1693,-70.64918 -2.27509,-65.67187 5.19088,-73.80785 13.61401,-82.03956 3.37225,-77.63655 -0.1693))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2020-2025"
 ]
}

 The dataset includes 14322766 records from 905 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003164-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uq925q
title: Occurrence Download

description: A dataset containing 318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vicugna vicugna (Molina, 1782)"
 ]
}

 The dataset includes 318 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045464-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ddycm
title: Occurrence Download

description: A dataset containing 801 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus leiophylla var. chihuahuana (Engelm.) Shaw"
 ]
}

 The dataset includes 801 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038314-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sn56xy
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malacoceros indicus (Fauvel, 1928)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 213 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059072-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6a2dak
title: Occurrence Download

description: A dataset containing 38918 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ramphastos tucanus Linnaeus, 1758",
 "Year 1990-2020"
 ]
}

 The dataset includes 38918 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140715-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcixdo
title: Occurrence Download

description: A dataset containing 31627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Laserpitium latifolium L.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 31627 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038315-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.raewyr
title: Occurrence Download

description: A dataset containing 1550 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Terenura spodioptila P.L.Sclater & Salvin, 1881"
 ]
}

 The dataset includes 1550 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059166-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8f5ydq
title: Occurrence Download

description: A dataset containing 11834516 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zenaida macroura (Linnaeus, 1758)"
 ]
}

 The dataset includes 11834516 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097448-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxqc3v
title: Occurrence Download

description: A dataset containing 2113 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Basileuterus basilicus (Todd, 1913)"
 ]
}

 The dataset includes 2113 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059157-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ua80y
title: Occurrence Download

description: A dataset containing 88515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lathyrus linifolius (Reichard) Bässler",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 88515 records from 261 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038317-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cy4h5c
title: Occurrence Download

description: A dataset containing 164943 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Muridae"
 ]
}

 The dataset includes 164943 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097441-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hhg85q
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cossypha heinrichi Rand, 1955"
 ]
}

 The dataset includes 61 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059112-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4wb97
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diabrotica virgifera zeae Krysan & R.Smith, 1980"
 ]
}

 The dataset includes 281 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045465-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.md2gh3
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "PublishingOrg is 0363cbd4-f666-455e-8e86-0bbddcf51950",
 "TaxonKey is Androsace vitaliana subsp. assoana (M.Laínz) Kress"
 ]
}

 The dataset includes 99 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0346505-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugtoz5
title: Occurrence Download

description: A dataset containing 2882 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Minuartia stricta (Sw.) Hiern"
 ]
}

 The dataset includes 2882 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038320-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89cw0d
title: Occurrence Download

description: A dataset containing 20744 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myosotis alpestris F.W.Schmidt"
 ]
}

 The dataset includes 20744 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038321-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhsxd6
title: Occurrence Download

description: A dataset containing 2055 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Synthliboramphus hypoleucus (Xantus de Vesey, 1860)"
 ]
}

 The dataset includes 2055 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059165-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vh59j
title: Occurrence Download

description: A dataset listing the 3931 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cichlidae"
 ]
}

 The dataset's 3931 records were derived from 417 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198149-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhannv
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Herpsilochmus scapularis (Wied, 1831)"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059202-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zlu55z
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bogertophis rosaliae (Mocquard, 1899)"
 ]
}

 The dataset includes 43 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038314-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bdhp3x
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pteropus melanotus Blyth, 1863"
 ]
}

 The dataset includes 58 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062323-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f49b32
title: Occurrence Download

description: A dataset containing 4120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Artocarpus altilis (Parkinson) Fosberg"
 ]
}

 The dataset includes 4120 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199627-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.