cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/pqt57-j3q83
title: Nitrosocaldus yellowstonensis

description: Raw data files of Nitrosocaldus yellowstonensis
description: <strong>Tilt Series Date:</strong> 2019-07-15</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Candidatus Nitrosocaldus yellowstonensis</p>
<strong>Strain:</strong> HL72</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -5.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Jose R De La Torre and students, SF state, culture growth</p>
<strong>Purification / Growth Conditions / Treatment:</strong> stationary phase</p>
<strong>Sample Preparation:</strong> Quantifoil R0.6/1 copper 300 mesh, 10nm gold, 22deg C, 100% humidity, manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-07-15-20/3dimage_105628/</p>20190715_Ny_stationary_6_full.rec,  Reconstruction (Pixel Size 1.0712 nm), 737.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        20190715_Ny_stationary_6.mrc,  Tilt Series (Pixel Size 0.2678 nm), 1.2 GB  
        
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        20190715_Ny_stationary_6.mrc.mdoc,  13.9 kB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.pvnu8r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zosterops kulambangrae",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044022-250811113504898/datasets/export for details.
DOI: 10.22002/vr0pk-b7e45
title: Paeruginosa_dfliG

description: These are Pseudomonas aeruginosa dfliG (flagellar motor switch protein) cells obtained from  .  the transposon library.
description: <strong>Tilt Series Date:</strong> 2019-06-23</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -8.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Cells are provided by Shannon Park (in Diannae Newman lab) from the transposon library.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were plated on LB agar plate with 100 ug/ml gentamicin. Then, single colony was . inoculated in LB culture (with 100 ug/ml gentamicin) at 37C overnight. After 16 hours, the cells . were added to grids and blotted.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-06-23-66/rawdata/</p>Paeruginosa_dFliG31.mrc,  Tilt Series (Pixel Size 0.449 nm), 2.9 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        Paeruginosa_dFliG31_full.rec,  Reconstruction (Pixel Size 1.796 nm), 737.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Paeruginosa_dFliG31.mrc.mdoc,  32.2 kB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.5pd49p
title: Occurrence Download

description: A dataset containing 3042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Linaria vulgaris",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3042 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044023-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mug6au
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Linaria vulgaris",
 "Country is Iceland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044024-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/2sj9k-6z145
title: Cell line25 incubated MG-132

description: 4 hours incubation MG-132 (0.4 ul) 1 μg/ml. Added 500 ul of Vpr-tomato pseudovirus to each well.
description: <strong>Tilt Series Date:</strong> 2016-02-29</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> Hela cells expressing TRIM5a-YFP</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Tom Hope</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown on R2/2 London finder grids coated with fibronectin</p>
<strong>Sample Preparation:</strong> Manual blotting</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2016-02-29-1/rawdata/</p>tomography1.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        tomography1_part121_1.rec,  Reconstruction (Pixel Size 2.4 nm), 890.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        tomography1_full.rec,  Reconstruction (Pixel Size 0.0 nm), 668.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.uyn5zb
title: Occurrence Download

description: A dataset containing 38130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-95.05558 12.8554,-89.83823 12.8554,-88.73871 12.8554,-88.73871 17.43296,-95.05558 17.43296,-95.05558 12.8554))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 38130 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044021-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erqm56
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Linaria vulgaris",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 64 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044025-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/3qfw5-jz032
title: Adipocyte Cell

description: FGF21Dose-symmetrical dose scheme
description: <strong>Tilt Series Date:</strong> 2017-11-30</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> Primary adipocyte cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 50000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Roger Kornberg and Maia</p>
<strong>Purification / Growth Conditions / Treatment:</strong> https://elifesciences.org/articles/43146#s4</p>
<strong>Sample Preparation:</strong> https://elifesciences.org/articles/43146#s4</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2017-11-30-31/rawdata/</p>tomo005_sorted_orig.mrc,  Tilt Series (Pixel Size 2.241 nm), 1.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        tomo005_sorted_orig.rec,  Reconstruction (Pixel Size 8.964 nm), 1.8 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        tomo005_sorted_full.rec,  Reconstruction (Pixel Size 0.0 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/j46vy-0kk70
title: Cos7 cells

description: Looking for midbodies or Tunelling nanotubes
description: <strong>Tilt Series Date:</strong> 2015-03-05</p>
<strong>Data Taken By:</strong> Rasika Ramdasi</p>
<strong>Species / Specimen:</strong> Cos7</p>
<strong>Strain:</strong> Cos7 cells</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF TOMO</p>
<strong>Sample Preparation:</strong> Synchronized cells with Thymidine 2mM. Frozen after 14 hours of washing.</p>
  rra2015-03-05-2_slicer12795.jpg: Actin around midbody? rra2015-03-05-2_slicer12799.jpg: Actin around microtubule bundle rra2015-03-05-2_slicer12800.jpg: Regular filament bundle..ESCRT? rra2015-03-05-2_slicer12802.jpg: Two different types of filament bundles
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2015-03-05-2/rawdata/</p>atlas10002.mrc,  Tilt Series (Pixel Size 0.5 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2015-03-05-2/rawdata/atlas10002.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10002_part81_2.rec,  Reconstruction (Pixel Size 2.0 nm), 623.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        atlas10002new.st_full.rec,  Reconstruction (Pixel Size 0.0 nm), 300.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.p96tvg
title: Occurrence Download

description: A dataset containing 43571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trisetum flavescens depauperatum, Trisetum flavescens lanatum, Trisetum flavescens majus, Trisetum flavescens pratense, Trisetum flavescens pratensis, Trisetum flavescens pratense, Trisetum flavescens purpurascens, Trisetum flavescens villosum, Trisetum pratense, Vulpia bromoides)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 43571 records from 952 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044020-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkkcch
title: Occurrence Download

description: A dataset containing 2859 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cacatua sulphurea",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 2859 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015230-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5tuh8
title: Occurrence Download

description: A dataset containing 1961 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spermacoce pusilla"
 ]
}

 The dataset includes 1961 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015228-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dfjcmj
title: Occurrence Download

description: A dataset containing 1091 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Astragalus glycyphyllos)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 1091 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015231-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7u5x7
title: Occurrence Download

description: A dataset containing 4606 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhodeus ocellatus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4606 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015233-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63fbuu
title: Occurrence Download

description: A dataset containing 4994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.23_1",
 "Month is one of (June, July, August)",
 "TaxonKey is Charadrius melodus"
 ]
}

 The dataset includes 4994 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015232-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szxecq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Indotyphlops braminus",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015234-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6vg8r8
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Memecylon lancifolium"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015236-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rfpca9
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Indotyphlops braminus",
 "Country is Honduras",
 "HasCoordinate is true"
 ]
}

 The dataset includes 48 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015235-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gkggj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Indotyphlops braminus",
 "Country is Oman",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015237-260108223611665/datasets/export for details.
DOI: 10.15468/dl.sc8t7f
title: Occurrence Download

description: A dataset containing 586524 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla reptans"
 ]
}

 The dataset includes 586524 records from 3365 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015100-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/u3wu1r/iquym7
title: 000540.hea
DOI: 10.13130/rd_unimi/u3wu1r/y3w90a
title: 000268.hea
DOI: 10.15468/vp3zqr
title: Réseau Loup - Lynx ONCFS - Lynx 2014 présence Régulière Mailles_10km_LAEA Réseau Loup-Lynx ONCFS

description: L’objectif de ce suivi est de cartographier l’aire de présence, celle-ci étant suivie annuellement grâce aux données récoltées tout au long de l’année. Les observateurs de terrain relèvent des indices de présence (proies sauvages, empreintes, analyses génétiques, observations visuelles,…) et les constats d’attaques.
DOI: 10.13130/rd_unimi/u3wu1r/yxahgz
title: 000148.hea
DOI: 10.15468/dl.u2vg74
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypertelis salsoloides",
 "HasCoordinate is true"
 ]
}

 The dataset includes 102 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041968-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/u3wu1r/4okwyu
title: 000383.hea
DOI: 10.13130/rd_unimi/u3wu1r/6ppywt
title: 000233.hea
DOI: 10.15468/dl.shrtug
title: Occurrence Download

description: A dataset containing 11282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is VectorBase (Bioinformatics Resource for Invertebrate Vectors of Human Pathogens)"
 ]
}

 The dataset includes 11282 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041969-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/u3wu1r/wroptc
title: 000749.hea
DOI: 10.13130/rd_unimi/u3wu1r/ogyj4i
title: 000256.hea
DOI: 10.13130/rd_unimi/u3wu1r/xivugl
title: 000728.hea
DOI: 10.13130/rd_unimi/u3wu1r/ptdlxm
title: 000303.hea
DOI: 10.13130/rd_unimi/u3wu1r/09an9f
title: 000641.hea
DOI: 10.13130/rd_unimi/u3wu1r/oi9txk
title: 000608.hea
DOI: 10.13130/rd_unimi/u3wu1r/v3atqy
title: 000564.hea
DOI: 10.13130/rd_unimi/u3wu1r/wujdf3
title: 000925.hea
DOI: 10.5281/zenodo.17640263
title: Infinitely fast critical dynamics: Teleportation through temporal rare regions in monitored quantum circuits

description: This repository contains a Julia notebook and JLD2 dataset files to reproduce all the figures appearing in the paper: "Infinitely fast critical dynamics: Teleportation through temporal rare regions in monitored quantum circuits"
DOI: 10.5281/zenodo.17640264
title: Infinitely fast critical dynamics: Teleportation through temporal rare regions in monitored quantum circuits

description: This repository contains a Julia notebook and JLD2 dataset files to reproduce all the figures appearing in the paper: "Infinitely fast critical dynamics: Teleportation through temporal rare regions in monitored quantum circuits"
DOI: 10.13130/rd_unimi/u3wu1r/n5bqjm
title: 000257.hea
DOI: 10.13130/rd_unimi/u3wu1r/e9qx9g
title: 000899.hea
DOI: 10.13130/rd_unimi/u3wu1r/5vgvfj
title: 000745.hea
DOI: 10.13130/rd_unimi/u3wu1r/ouj3dt
title: 000258.hea
DOI: 10.13130/rd_unimi/u3wu1r/g3ccdf
title: 000123.hea
DOI: 10.13130/rd_unimi/u3wu1r/kbmttb
title: 000470.hea
DOI: 10.13130/rd_unimi/u3wu1r/nhe4kl
title: 000929.hea