cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zj3scn
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Amblyteles armatorius (Forster, 1771)"
 ]
}

 The dataset includes 306 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009605-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.10084733.v1
title: HLAtype_eQTLs.zip

description: Zipped file including HLA-type eQTLs.<br><br>“Conditional 0” refers to HLA-eQTLs conditional on the lead primary SNP eQTL, “Conditional 1” refers to HLA-eQTLs conditional on the lead primary and lead conditional 1 eQTLs and “Conditional 2” refers to HLA-eQTLs conditional on the lead primary, conditional 1 and conditional 2 eQTLs. <br>
DOI: 10.6084/m9.figshare.5123728.v1
title: Supplementary Material for: Comparative Study on the Difference in Functional Outcomes at Discharge between Proximal and Total Gastrectomy

description: Several studies have regarded proximal gastrectomy (PG) as optimal compared to total gastrectomy (TG) for upper stomach cancer. In addition to the traditional outcomes of complication and mortality, change in functional status should be considered as another relevant outcome in aging generations. However, there has been no community-based appraisal of functional outcomes between PG and TG. Using an administrative database, we compared functional outcomes between PG and TG. Among 12,508 patients who survived for ≥15 years and underwent open gastrectomy between 2008 and 2010, we examined patient characteristics, comorbidities, functional status estimated by the Barthel index (BI) at admission and discharge, complications, ICU care, ventilation administration, blood transfusion, operating room time, resumption of oral intake, length of stay and total charges. With reference to distal gastrectomy (DG), we performed multivariate analyses to assess the impacts of PG and TG on complications and BI deterioration. A total of 434 PGs and 4,941 TGs were observed in 148 and 295 hospitals, respectively. Patient characteristics, care process, resumption of oral intake, operating room time, length of stay and total charges were also significantly different among the three gastrectomy types. PG, TG and DG were not associated with complications or functional deterioration. Patient characteristics, preoperative blood transfusion and longer operating room time were significantly associated with more complications and BI deterioration. Since patient case mix and longer operating room time were associated with poor outcomes, physicians should recognize the role of PG and might optimally challenge and complete gastrectomies within the appropriate indications.
DOI: 10.6084/m9.figshare.5896750.v1
title: Home Range Utilization by Chacma Baboon (Papio ursinus) Troops on Suikerbosrand Nature Reserve, South Africa

description: Secondary data was used to determine the home range sizes and seasonal movements of 10 troops of baboons on Suikerbosrand Nature Reserve in South Africa. Data originated from GPS tracking collars that were fitted to one female baboon in each of 10 troops.
DOI: 10.6084/m9.figshare.28911608
title: Antimicrobial resistance genes from SA urban WWTPs.xlsx

description: This dataset includes detailed metadata on antimicrobial resistance genes (ARGs) detected in metagenomic DNA from wastewater and riverine environments in Tshwane, South Africa. Each entry provides sample-level information including sample ID, sample type, ARG identity, ARG family, resistance class, and abundance. The data supports the analysis presented in the PhD thesis titled: <b>An ecological approach to risk characterisation of antimicrobial resistance from South African urban wastewater and freshwater microbiomes</b>. This dataset is intended for transparency, reproducibility, and further research use
DOI: 10.6084/m9.figshare.10279634.v2
title: Improving Diagnosis of Tuberculosis in People Living with HIV: the ID-TB/HIV Study Dataset

description: Data were collected as part of a prospective, cross-sectional study of 2,009 enrolled participants recruited from 4 healthcare settings in Cambodia, 1 in Thailand, and 3 in Vietnam from September 2006 through July 2008. Eligible participants were ≥7 years of age, not screened for TB in last 3 months, had not received TB treatment or isoniazid therapy within the last year, and not on antiretroviral therapy (ART) for HIV. After participants gave consent, they were administered a standardized, paper-based questionnaire supplemented by medical chart review assessing demographic characteristics, HIV risk factors, medical history and symptoms of illness); provided a physical examination and chest radiography; and participants provided sputum, blood, urine, stool samples, and lymph node aspirates (if indicated) for testing. The primary outcome was to construct algorithms for TB screening and diagnosis prior to initiation of ART and compare findings with the 2007 World Health Organization (WHO) algorithm used for TB screening and diagnosis in people with HIV.
DOI: 10.6084/m9.figshare.28856963.v1
title: Angela you are 'unacceptable'... Reddit Comments

description: Comments scraped from the post, "Angela You Are 'Unacceptable'..."<br>https://www.reddit.com/r/90DayFiance/comments/1etffuc/angela_you_are_unacceptable_shes_suing_him/
DOI: 10.6084/m9.figshare.13473594.v1
title: Supplementary information

description: Supplementary information
DOI: 10.6084/m9.figshare.28481021.v1
title: Supplementary Material for: Evolution of Retinitis to Macular Hole and Closure: OCT Insights into an Unusual Course of Ocular Toxoplasmosis

description: Introduction: 
To describe the distinctive optical coherence tomography (OCT) characteristics and the underlying mechanisms leading to the uncommon occurrence of macular hole (MH) development in ocular toxoplasmosis.

Case Presentation: 
A 13-year-old girl with a history of bilateral ocular toxoplasmosis presented with newly onset floaters and a progressive loss of vision in her right eye. Examination revealed macular chorioretinal scars in both eyes. Foveal area in the right eye also revealed some barely distinct creamy white lesions which were visible in OCT as punctate inner and outer retinitis with some full thickness lesions, indicating active disease in the right eye. Treatment with oral co-trimoxazole and prednisolone was initiated. At two-weeks follow-up, there was complete necrosis of fovea leading to formation of MH with an overhanging membrane. Rapid evolution continued with signs of progressive closure of the hole starting within a week of MH formation. At four months, the foveal contour had restored with some evidence of regeneration of external limiting membrane. However, a small outer layer defect persisted and visual acuity remained at 3/60, with only a minimal subjective improvement in visual function.

Conclusion: 
Liquefactive necrosis of retina can lead to a rapid course of MH formation without the presence of visibly florid retinal lesions and vitritis in toxoplasmosis. Spontaneous closure of the MH is possible with medical treatment, but the visual prognosis remains uncertain, as the MH is mostly closed with disorganized retinal tissue. OCT is crucial for diagnosis and monitoring, underscoring the importance of immediate attention to new symptoms.
DOI: 10.6084/m9.figshare.7356770.v1
title: خبرنامه علم سنجی

description: <b>خبرنامه علم سنجی</b> که ۱۱ شماره از آن (۴ شماره در سال) در فاصله بهار ۱۳۹۰ تا پاییر ۱۳۹۲ در پژوهشگاه علوم و فناوری اطلاعات ایران (ایرانداک)، پژوهشکده علوم اطلاعات منتشر شد. این خبرنامه دیگر منتشر نمی‌شود و این آرشیوه نسخه های قدیمی است<br><b>شماره ها</b><b>شماره ۱ بهار ۱۳۹۰</b>آغاز کار، جمالیجایگاه ایران در علم جهانی، نفیسه دهقانپورمعرفی نرم افزار هیس تسایت، مهری صدیقیپایان نامه های علم سنجیمعرفی طرح پژوهشیاخبار<br><b>شماره ۲ تابستان ۱۳۹۰</b>سخن آغازین، سعید اسدیعلم سنجی در قامت یک رشته دانشگاهی، مصاحبه با دکتر حمزه علی نورمحمدیگزارش کنفرانس، احسان محمدیاخبار<br><b>شماره ۳ پاییز ۱۳۹۰</b>سخن آغازین، سعید اسدیخبرهای پژوهشگاه علوم و فناوری اطلاعات ایران آمار و ارقاماخبارانتشاراتهمایش ها<br><b>شماره ۴ زمستان ۱۳۹۰</b>سخن آغازین: یك سال با شما، سعید اسدیبررسی چشم انداز در حال تغییر پژوهش در کشورهای عربی، فارسی و ترک زبان خاورمیانه - مقاله ترجمه، مترجم جواد ریاحی اصلخبرهای پژوهشگاه علوم و فناوری اطلاعات ایران اخبار و رویدادهای علمیمعرفی كتاب<br><b>شماره ۵ بهار ۱۳۹۱</b>سخن نخست، سعید اسدیچگونه عملکرد پژوهشی خود را به رایگان رصد کنیم، حمید رضا جمالی مهموئیابزارهای نرم افزار نگاشت علمی: بررسی، تحلیل، و مطالعه مشارکتی میان ابزارها - بخش اول – مقاله ترجمه، مترجمان سامان ثقفی و مریم اسدیتصویر: روند پرشتاب تولیدات علمی ایراناخبار<br><b>شماره ۶ تابستان ۱۳۹۱</b>سخن نخست، سعید اسدیعلم‌سنجی: مقاله دانشنامه‌ای، نوشته لوئت لیدسدورف، ترجمه مهسا نیکزادابزارهای نرم افزار نگاشت علمی: بررسی، تحلیل، و مطالعه مشارکتی میان ابزارها بخش دوم - مقاله ترجمه، مترجمان سامان ثقفی و مریم اسدیاخبار<br><b>شماره ۷ پاییز ۱۳۹۱</b>سخن نخست، سعید اسدیمصاحبه با دكتر نورمحمدی در خصوص كولنت 2012، مصاحبه از سعید نورزادرتبه بندی دانشگاه های علوم پزشكیخبرهای حوزه علم سنجیهمایش ها<br><b>شماره ۸ زمستان ۱۳۹۱</b>گزارش مجله نیچر از تولید علم در ۲۰۱۲، حمید رضا جمالی مهموئیمعرفی پایگاه سایمگو، فائزه آقا ملاییموتورهای جستجوی فارسی و مقایسه تطبیقی آن‌ها با بینگ، عبدالرضا نوروزی جاکلیاخبار<br><b>شماره ۹ بهار ۱۳۹۲</b>علم ایران در آی اس آی و اسکوپوس، حمید رضا جمالی مهموئیرتبه‌بندی دانشگاه لایدن از دانشگاه‌های جهان، حمید رضا جمالی مهموئیاولین‌ها و ترین‌های ایران در آی اس آی، حمید رضا جمالی مهموئیارتباط علمی تحت وب در عصر جهانی‌شدن، مقاله ترجمه، مترجمان عباس رجبی و نادیا حاجی عزیزینگاشت معنایی واژه‌ها و همایندی واژگان در بافت متن‌ها، مقاله ترجمه، نوشته لوئت لیدسدورف،‌مترجم حمید احمدیاخبار<br><b>شماره ۱۰ تابستان ۱۳۹۲</b>سخن نخست، سعید اسدیارتباط علمی تحت وب در عصر جهانی‌شدن - بخش دوم و پایانی مقاله ترجمه، مترجمان عباس رجبی و نادیا حاجی عزیزینگاشت معنایی واژه‌ها و همایندی واژگان در بافت متن‌ها -بخش دوم و پایانی، مقاله ترجمه، نوشته لوئت لیدسدورف،‌مترجم حمید احمدیاخبار انتشارات و همایش‌ها<br><b>شماره ۱۱ پاییز ۱۳۹۲</b>تحلیل استنادی کتاب‌های تخصصی دوره کارشناسی ارشد علم‌سنجی، لیلا سلیمانی اردکانی گزارش رتبه‌بندی کشورهای دنیا بر اساس دانشگاه‌های برتر آن‌ها، عبدالصمد کرامت فرگزارشی از همایش مفاهیم نظری و کاربردی علم سنجی : از علم تا عمل، زهرا ساروخانیاخبار<br><br>
DOI: 10.6084/m9.figshare.17212124.v2
title: Geo-referenced microsatellite data from Myotis emarginatus

description: Microsatellite genotypes and Geographic coordinates of 811 individual Myotis emarginatus from across Europe from article "Conservation by trans-border cooperation: Population genetic structure and diversity of Geoffroy’s bat (<i>Myotis emarginatus</i>) at its north-western European range edge"
DOI: 10.6084/m9.figshare.22269625.v1
title: Data for "Intrinsic motivation for choice varies with individual risk attitudes and the controllability of the environment"

description: Data for "Intrinsic motivation for choice varies with individual risk attitudes and the controllability of the environment"
DOI: 10.6084/m9.figshare.28553024.v1
title: Supplementary Material for: From Lens to Scalpel: A Systematic Literature Review of Intestinal Obstruction after Video Capsule Endoscopy

description: Introduction
Video Capsule Endoscopy (VCE) is a valuable non-invasive diagnostic tool for gastrointestinal disorders, but it carries a risk of capsule retention and subsequent bowel obstruction. The aim of the present study was to examine the manifestations, diagnostic approaches, treatment modalities, and outcome of patients with bowel obstruction due to VCE. 

Methods
A comprehensive search was conducted in PubMed/Medline, EMBASE, Cochrane and Scopus databases focusing on intestinal obstruction post VCE. 

Results
Out of 399 unique articles, 27 studies were included, involving 30 patients, with an average age of 54 ± 22.3 years and a female-to-male ratio of 1.9:1. Common indications for VCE included Crohn’s disease, anemia, abdominal pain with diarrhea, and obscure gastrointestinal bleeding. The obstruction most often occurred in the small intestine, predominantly in the ileum (20 patients, 67%) and the duodenum (5 patients, 17%). Diagnostic methods included CT scans in 19 cases (66%) and X-ray imaging in 8 cases (28%). Treatment varied from conservative management to surgical intervention and no cases of mortality or morbidity were reported. 

Conclusions 
This study highlights the importance of a multidisciplinary approach of such cases, concentrating on tailored therapeutic strategies to prevent and address complications related to VCE. Further research with larger cohorts is needed for a deep-er understanding of risk factors and long-term outcomes.
DOI: 10.6084/m9.figshare.3521390.v1
title: Appendix B. Statistical results tables from Year-long analysis B1, Seasonal analyses B2, and seasonal contrasts between mixes B3.

description: Statistical results tables from Year-long analysis B1, Seasonal analyses B2, and seasonal contrasts between mixes B3.
DOI: 10.6084/m9.figshare.27094336.v1
title: raw data of the ugpE manuscript

description: raw data of the ugpE manuscript
DOI: 10.6084/m9.figshare.24158979.v2
title: <b>Causal association between gut microbiota and risk of prostatitis, BPH and prostatic cancer: A bi-directional two-sample Mendelian randomization study</b>

description: Detailed Mendelian randomization analyses for the associations between 119 gut microbiota and Chronic prostatitis (Supplementary 1), BPH (Supplementary 2) and prostate cancer (Supplementary 3).
DOI: 10.6084/m9.figshare.28527137.v1
title: Data Dictionary/README files

description: Data Dictionary contains all info for each sample/mouse of each experiment.All README files are also included with brief experimental description.
DOI: 10.6084/m9.figshare.28792286.v1
title: HCMV dataset

description: HCMV Dataset of scRNA-seq measurements from viral infected MoDC, spliced and unspliced reads estimated with velocyto.Please cite the original publication: https://doi.org/10.1038/s41467-024-45614-3
DOI: 10.6084/m9.figshare.3561528.v1
title: Data Paper. Data Paper

description: File List Life_history_data_of_lizards_of_the_world.txt.zip (MD5: 13aa07593aa81a05423bbd0ffc9392cc) Description Life is defined by a capacity for reproduction, yet the ways in which animals reproduce vary tremendously among species. Reproductive life histories are complex phenomena influenced by a variety of factors, such as physical condition of individuals, food supply, bauplan, and phylogenetic history, which are often correlated. Understanding life histories is crucial in evolutionary ecology, because they represent different strategies that evolved to maximize individual fitness. Variation in life history can be attributed to both historical (= phylogenetic) and non-historical (= environmental) causes. We compiled a large data set on lizard life history variables. Our data set consists of life history data for 737 lizard populations, representing 337 species in 33 families from 280 study sites globally. About 64% of these data were collected directly by the authors. Regarding data collected by authors, we sexed lizards by dissection and direct examination of gonads. Females were considered reproductive if vitellogenic follicles or oviductal eggs were present. We regarded the simultaneous presence of enlarged vitellogenic follicles and either oviductal eggs or corpora lutea as evidence for the sequential production of more than one clutch of eggs per year. We considered clutch size as the number of vitellogenic follicles or oviductal eggs in mature females. For each population, we recorded the following variables, if available: adult female mass (g), adult female SVL (mm), female SVL at maturity (based on SVL of smallest reproductive female), offspring SVL (based on hatchling size or smallest individual in population), clutch or litter size (number of offspring per clutch or litter for all reproductive females in the population), total number of clutches or litters per year, clutch frequency (single- or multiple-brooded), relative clutch or litter mass [total volume of eggs or embryos (cc) divided by adult female mass (g)], reproductive mode (oviparous or viviparous), foraging mode (sit-and-wait or active), distribution (tropical or temperate), and preferred habitat type (aquatic, arboreal, bromelicolous, fossorial, psammophilous, saxicolous, semi-arboreal, or terrestrial). These data are valuable to test various life history hypotheses, including phylogenetic design constraints and effects of ecology and climate on reproductive tactics. <i>Key words</i>: <i>ecology; reproduction; Squamata.</i>
DOI: 10.6084/m9.figshare.5711683.v4
title: Whippet_analysis_scripts

description: Analysis scripts and data files to accompany Sterne-Weiler et al. paper
DOI: 10.6084/m9.figshare.23816958.v1
title: INTERVIEW QUESTIONS

description: This document contains the set of key questions that guided the semistructured interviews with preservice teachers.
DOI: 10.6084/m9.figshare.22120190.v2
title: The Landscape of NIAID-funded Observational COVID-19 Cohort Studies - Supplemental Data (May 2023)

description: <b>Short summary: </b>A description of the process and lessons learned from the National Institute of Allergy and Infectious Diseases to support 58 human cohort studies funded in 2020 and 2021 that tracked COVID-19 cases. Included here are the underlying metadata.Reed S Shabman, Mason Booth, Michael Cooper, Marciela M DeGrace, Patricia C Fulkerson, Teresa Hauguel, Chelsea Lane, Alyssa Meyer, Lori Newman, Diane Post, Mercy Prabhudas, Rubya Qidwai, Cynthia Rojas, Claire Schuster, Carolyn Williams, Liliana Brown, The Landscape of Observational COVID-19 Cohort Studies Funded by the National Institute of Allergy and Infectious Diseases, <i>American Journal of Epidemiology</i>, 2023;, kwad224, https://doi.org/10.1093/aje/kwad224<b>Web Table 1.</b> All study metadata broken into different categories. The categories are: Abbreviated Title; Title; PI (Contact); Institution (Name); Institution (Address); Institution (Collection Center Name); Number Of Participants; Age Group; Special Population Studied (Health Care Workers/First Responders, Nursing Homes, Prisons, etc.); Participant Enrollment Site (Foreign/ Domestic); Location Of Participant Enrollment Site (Country); Institution (Collection Center Address); Location Of Participant Enrollment Site (State); Location Of Participant Enrollment Site (City); Sampling Strategy; Type Of Study (Surveillance, Transmission, Immunology, Disease Course/Severity); Begin Sampling Date; End Sampling Date; Estimated Time To Completion (Months); National Clinical Trial Identifier; Grant Or Contract Number; Center/Network; and Samples Collected. Also included are answers to a series of ‘YES/NO’ questions that describe the goals of the study.<b>Web Table 2:</b> A definition for each of the metadata fields.<b>Web Table 3:</b> Left side of the excel is a pivot table with filters of the S1 metadata. Right side of the excel are 'Slicers' for tracking the NCSWG priority questions.<b>Web Table 4:</b> Underlying raw data used to construct Fig 4A and Fig 4B.<b>Web Table 5:</b> Underlying raw data used to construct Fig 4C.<b>Web Table 6:</b> Underlying raw data used to construct Fig 4D.
DOI: 10.6084/m9.figshare.14518407.v1
title: Artifacts for paper "Providing Real-time Assistance for Repairing Runtime Exceptions using Stack Overflow Posts"

description: This is the artifact package for the paper titled "Providing Real-time Assistance for Repairing Runtime Exceptions using Stack Overflow Posts".
DOI: 10.6084/m9.figshare.8009555.v1
title: Fileset of twelve EnergyPlus input data files with random thermophysical properties

description: This fileset consists of twelve input data files (IDF) with random thermal transmittance, divided equally into low and high thermal mass, to be run by EnergyPlus software. The single-family buildings were randomly generated using EPSAP algorithm (doi:10.1016/j.autcon.2013.06.005).
DOI: 10.6084/m9.figshare.7583216.v1
title: Refined_alignment_per_marker (exon_flanking/for_dataset2)

description: This zip package includes refined alignment of 94 markers containing sequence with exon flanking (dataset2).
DOI: 10.6084/m9.figshare.16543620.v1
title: Data and code for A neonicotinoid pesticide alters how nectar chemistry affects bees

description: All datasets associated with study, including metadata file; R script for all statistical analyses and figure generation.<br>
DOI: 10.6084/m9.figshare.20423706.v1
title: Supplementary Material for: Serum Uromodulin Levels Reflect Severity of Clinicopathological Findings in Early Stage IgA Nephropathy

description: <b><i>Introduction:</i></b> Uromodulin (UMOD), also known as Tamm-Horsfall protein, is a kidney-specific protein. Recently, low levels of urinary UMOD (uUMOD) have been reported as a risk factor for renal function decline in IgA nephropathy (IgAN). However, the clinical significance of serum UMOD (sUMOD) is not clear. In this study, we clarified the clinical significance of sUMOD in IgAN. <b><i>Methods:</i></b> One hundred eight biopsy-proven IgAN patients were included in this study. The relationships between sUMOD levels and various clinicopathological findings were evaluated. <b><i>Results:</i></b> sUMOD was positively correlated with estimated glomerular filtration rate (eGFR) (<i>p</i> &lt; 0.001, <i>r</i> = 0.5) and negatively correlated with creatinine (Cr) (<i>p</i> &lt; 0.0001, <i>r</i> = −0.51) and urinary protein (UP) (<i>p</i> = 0.005, <i>r</i> = −0.33). In the low sUMOD group (&lt;145 ng/mL), Cr was significantly higher (<i>p</i> &lt; 0.0001) and histopathological changes were severe. The cumulative incidence of a 30% decline in eGFR was 25.6% overall, 0% in histological grade (H-G) I, 33.3% in H-G II, 59.6% in H-G III, and 66.7% in H-G IV. In univariate analyses, prognostic factors for a 30% decline in eGFR were male, high UP, low albumin, low eGFR, and low sUMOD. When comparing the severe histopathological classes (H-G II–IV) and H-G I, low sUMOD was a risk factor for severe histopathological changes. Furthermore, in patients with eGFR &gt; 60 (<i>n</i> = 74), multivariate analyses revealed that low sUMOD independently predicted a 30% decline in eGFR and having severe histopathological changes. <b><i>Conclusion:</i></b> In IgAN, sUMOD levels were associated with renal function. Low sUMOD levels may be a risk factor for worsening renal function, especially in the early stage of IgAN.
DOI: 10.6084/m9.figshare.5596726.v1
title: 2017TC004867_OE_waveforms.zip

description: Waveform data from network OE, used for the publication Reiter, F., Freudenthaler, C., Hausmann, H., Ortner, H., Lenhardt, W., & Brandner, R. (2018). Active seismotectonic deformation north of the Dolomites indenter, Eastern Alps. Tectonics, 37(12), 4625-4654. https://doi.org/10.1029/2017TC004867<br>
DOI: 10.6084/m9.figshare.9933095.v1
title: Fig2

description: to reproduce the model results in Fig. 2 in the paper by Yang & Faccenda, 2019, Nature. Intraplate and petit-spot volcanism originating from upwelling hydrous mantle transition zone.
DOI: 10.6084/m9.figshare.14794839.v1
title: Project data

description: Dataset for journal article:<br>A Normative Database of A-Scan Data Using the Heidelberg Spectralis Spectral Domain Optical Coherence Tomography Machine<br>