cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.933278
title: Underway CTD raw data files from RV POLARSTERN cruise PS123 across the Atlantic Ocean

description: Underway (U)CTD data were collected during the PS123 expedition across the Atlantic Ocean aboard RV Polarstern. The UCTD was operated once per day to create sound velocity profiles for multibeam measurement calibration. Ship's speed was reduced to around 5 knots and depths up to 890 m were reached with the UCTD probe.
DOI: 10.1594/pangaea.811907
title: Physical oceanography during POLARSTERN cruise ANT-XXIX/3
DOI: 10.1594/pangaea.977635
title: Sediment echosounder data (EdgeTech 3100 entire dataset) of Quarantine Bay, United States of America

description: This dataset contains sub-bottom seismic profiles collected in Quarantine Bay, located in southeastern Louisiana, USA, on the east side of the lower Mississippi River. Surveys were conducted on 23 September 2022, 25 September 2022, and 2 November 2022 to investigate the shallow subsurface stratigraphy of Quarantine Bay. These data were collected to support interpretations of delta development within the bay and to assess its relationship to Neptune Pass—the largest new distributary of the Mississippi River. The profiles also contributed to the calculation of sediment deposition as part of a broader sediment budget comparing erosion in Neptune Pass to deposition in Quarantine Bay. Data acquisition was performed using an Edgetech 3100-P CHIRP sub-bottom profiling system paired with an SB-216 towfish. Acoustic signals were transmitted in the 2–16 kHz frequency range, with typical penetration depths of approximately 1–5 meters below the seafloor. The study area extends from 29.432624°N to 29.375139°N latitude and from -89.522453°W to -89.458961°W longitude.
DOI: 10.21233/staj-0w36
title: Pella vertebrate fauna dataset

description: Raw data for the Pella vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/f2a8-qv17
title: St. Shotts pollen dataset

description: Raw data for the St. Shotts pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.1594/pangaea.977636
title: Light Distance And Ranging (LIDAR) data of elevations from Quarantine Bay and Neptune Pass, Louisiana, United States of America

description: This dataset contains Light Detection and Ranging (LiDAR) elevation data from Quarantine Bay and Neptune Pass, located in southeastern Louisiana, USA, on the east side of the lower Mississippi River. Data were collected on 6 October 2022 and 28 March 2023 to investigate landform development and vegetation dynamics associated with the expansion of Neptune Pass, the largest new distributary of the Mississippi River. The study area spans from 29.397°N to 29.272°N latitude and from -89.521°W to -89.474°W longitude. Data acquisition was performed using a DJI Matrice 300 RTK drone platform equipped with a Zenmuse L1 gimbal payload, which integrates both a LiDAR scanner and a high-resolution RGB camera. Digital elevation models (DEMs) and visible light mosaics were produced from dense 3D point clouds using DJI Terra (https://enterprise.dji.com/dji-terra) and CloudCompare (https://github.com/CloudCompare/CloudCompare/releases/). Georeferencing was achieved using real-time kinematic (RTK) GPS ground control points in QGIS to align LiDAR pulses and imagery with real-world coordinates. The final products include high-resolution DEMs and RGB orthomosaics suitable for geomorphological and ecological analysis.
DOI: 10.1594/pangaea.977638
title: Multibeam bathymetry processed data (Reson SeaBat 7125 entire dataset, raw data converted to GIS compatible data formats) of RV PENALND during cruise NP1, Neptune Pass, United States of America

description: This dataset provides high-resolution bathymetric data of Neptune Pass, the largest new distributary of the Mississippi River, located in southeastern Louisiana, USA. Data were collected on 6 June 2022 to investigate the geomorphic evolution of Neptune Pass and to support the development of a sediment budget comparing erosion in Neptune Pass to deposition in Quarantine Bay. The survey area extends from 29.390334°N to 29.355576°N latitude and from -89.513995°W to -89.503076°W longitude. Data were acquired using a Reson SeaBat 7125 SV2 multibeam sonar system, integrated with a Position and Orientation System for Marine Vessels (POS MV) for accurate navigation and motion compensation. Survey operations and data acquisition were conducted using Qinsy hydrographic software.
DOI: 10.1594/pangaea.977639
title: Singlebeam bathymetry processed data (ODOM Hydrotrac echosounder entire dataset, raw data converted to GIS compatible data formats) of MV MUDLUMP during cruise QB1, Quarantine Bay, United States of America

description: This dataset contains bathymetric measurements of Quarantine Bay, located in southeastern Louisiana, USA, on the east side of the lower Mississippi River. Data were collected on 29 September 2022 and 2 November 2022 to investigate the geomorphology of Quarantine Bay, the receiving basin for Neptune Pass—the largest new distributary of the Mississippi River. The bathymetric data also contributed to the development of a sediment budget comparing erosion in Neptune Pass to deposition in Quarantine Bay. Surveys were conducted aboard the University of New Orleans research vessel, R/V Mudlump, using an Odom Hydrotrac single-beam echosounder operating at 200 kHz, mounted on a survey pole. A Trimble R8 real-time kinematic (RTK) GPS unit was positioned 1.86 m directly above the transducer to provide precise vertical and horizontal positioning. To account for vessel motion, a Teledyne DMS-25 motion sensor was affixed to the pole to record heave, pitch, and roll. All data were collected and processed using Hypack hydrographic survey software. The survey area extends from 29.432818°N to 29.384789°N latitude and from -89.522387°W to -89.458752°W longitude.
DOI: 10.1594/pangaea.977641
title: Sediment Budget in Neptune Pass and Quarantine Bay, Louisiana, United States of America

description: This dataset presents a sediment budget quantifying erosion in Neptune Pass and deposition in Quarantine Bay, both located on the lower east side of the Mississippi River in southeastern Louisiana, USA. The analysis is based on data collected in 2016 and 2022. The sediment budget was developed to assess sediment dynamics in this emerging distributary system, comparing scour in Neptune Pass to sediment accumulation in its receiving basin, Quarantine Bay. Erosional changes in Neptune Pass were quantified by differencing bathymetric data collected during a 2016 discharge survey with data from a 2022 multi-beam bathymetric survey. The spatial extent of the study area ranges from 29.500°N to 29.358°N latitude and from -89.525°W to -89.416°W longitude.
DOI: 10.1594/pangaea.977644
title: Satellite imagery from Neptune Pass, Louisiana, United States of America

description: This dataset contains satellite imagery of Neptune Pass, located on the east side of the lower Mississippi River in southeastern Louisiana, USA. The imagery was captured on 23 September 2022 and 14 October 2022. The purpose of this dataset is to support the analysis of the geomorphological evolution of Neptune Pass—the largest active distributary of the Mississippi River—and the delta it is forming in Quarantine Bay.The spatial extent of the study area ranges from 29.432838°N to 29.375311°N latitude and from -89.522739°W to -89.458791°W longitude. Satellite data were obtained from the Sentinel-2 mission, operated by the European Space Agency's Copernicus program. Imagery was accessed through the Sentinel Hub platform (https://www.sentinel-hub.com) under the Copernicus open access data policy. The legal terms of use can be found at https://sentinel.esa.int/documents/247904/690755/Sentinel_Data_Legal_Notice.
DOI: 10.1594/pangaea.977645
title: Vibracores collected in Quarantine Bay, Louisiana, United States of America

description: This dataset contains vibracore samples collected in Quarantine Bay, located in southeastern Louisiana, USA, on the east side of the lower Mississippi River. Sampling was conducted on 12 and 13 June 2023. The primary objective was to investigate the geology of Quarantine Bay, which serves as the receiving basin for Neptune Pass—the largest new distributary of the Mississippi River. Sediment cores were collected using a vibracorer, a standard technique employed in the Mississippi River Delta and other coastal environments. The coring apparatus utilized aluminum pipes with a diameter of 7.6 cm. Core compaction was assessed during collection by comparing the depth of sediment recovered in the barrel to water depth measurements taken via tape measure and/or hand ruler. The spatial extent of the study area ranges from 29.432624°N to 29.375139°N latitude and from -89.522453°W to -89.458961°W longitude. Specific core locations are provided in the associated data table.
DOI: 10.1594/pangaea.977646
title: Discharge Survey Results in the lower Mississippi River, United States of America

description: This dataset contains discharge measurements collected in the Lower Mississippi River, Louisiana, USA. Measurements were taken on the following dates: 24 May 2022, 23 August 2022, 4 April 2023, 17 April 2023, 18 April 2023, 15 May 2023, 16 May 2023, 12 June 2023, 13 June 2023, 25 July 2023, 26 July 2023, 19 September 2023, 30 January 2024, 16 February 2024, and 27 February 2024. Data were collected to determine the discharge of the Mississippi River and to assess its relationship to Neptune Pass, currently the largest new distributary of the river. Measurements were obtained using an Acoustic Doppler Current Profiler (ADCP). The data collected on 24 May 2022 and 16 February 2024 were acquired by Kolker and colleagues as part of this study, while the remaining data were collected by the U.S. Army Corps of Engineers during routine discharge surveys and shared with the authors. Additional discharge data from the USGS Belle Chasse gauge (site number 07374525) were obtained from https://waterdata.usgs.gov. The study area is located in southeastern Louisiana, with geographical bounds approximately spanning from 29.847°N, -90.023°W (northwest) to 29.129°N, -89.075°W (southeast).
DOI: 10.15468/dl.m3fkxh
title: Occurrence Download

description: A dataset containing 1095 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex oklahomensis Mack."
 ]
}

 The dataset includes 1095 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020567-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrmagw
title: Occurrence Download

description: A dataset containing 27532 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spartina anglica C.E.Hubb."
 ]
}

 The dataset includes 27532 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020565-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/qf8d-6238
title: Duck Pond diatom surface sample dataset

description: Raw data for the Duck Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/r09t-8g65
title: B94-18 water chemistry dataset

description: Raw data for the B94-18 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/m0st-yq33
title: Midland Site vertebrate fauna dataset

description: Raw data for the Midland Site vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/7vza-sz28
title: Murderkill River diatom dataset

description: Raw data for the Murderkill River diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.26751586.v1
title: Characterization of the North American aerial migratory niche

description: Seasonal measures from 143 NEXRAD sites of fights height envelopes and timing of peak migration within 24-hour phases as measured as hour after sunset. Flight height envelopes include the envelope starting height (<i>mean_start_height_m</i>), width (<i>mean_envelope_width_m</i>), and ending height (<i>mean_end_height_m</i>), and timing of peak migration is measured in hours after sunset including the mean (<i>mean_peak_hr_after_sunset</i>), median timing (<i>median_peak_hr_after_sunset</i>), and standard deviation (<i>sd_peak_hr_after_sunset</i>).
DOI: 10.21233/2rn8-2g52
title: Ash Lake water chemistry dataset

description: Raw data for the Ash Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/wxmj-nk06
title: Red Wing (Stauffer Elephant 52) vertebrate fauna dataset

description: Raw data for the Red Wing (Stauffer Elephant 52) vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.27020455
title: <b>Assessment of computational methods in predicting TCR-epitope binding recognition</b>

description: T-cell receptors (TCRs) are critical for the immune system's ability to recognize specific epitopes. Accurate prediction of TCR-epitope interactions is fundamental for understanding and enhancing immune responses. Despite significant advances in computational methods for TCR-epitope binding prediction, a thorough evaluation of these tools remains lacking. Here, we assessed 50 state-of-the-art TCR-epitope prediction models using 21 datasets covering 762 epitopes and hundreds of thousands corresponding binding TCR sequences. Our analysis revealed that while the ratio of positive to negative samples subtly influences performance, the source of negative TCR samples significantly impacts model accuracy. External negative data may introduce uncontrolled confounders, compromising evaluation reliability. A positive correlation between the number of TCRs per epitope and model performance highlights the importance of large, diverse datasets. Multi-feature models generally outperform single CDR3β models, but generalization to unseen epitopes remains a challenge across all evaluated models. Using independently sourced test sets, which offer practical predictions for real-world applications, for both seen and unseen epitopes is crucial for objective performance assessment. These insights would guide the development of more accurate and robust computational tools for TCR-epitope interaction prediction, accelerating advancements in this evolving field.
DOI: 10.21233/1skm-tb52
title: Diependaal pollen dataset

description: Raw data for the Diependaal pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/jy7a-dj32
title: Rachelsee pollen dataset

description: Raw data for the Rachelsee pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/2rs3-ae25
title: Billet [EkNv-36] vertebrate fauna dataset

description: Raw data for the Billet [EkNv-36] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/7btg-b996
title: Walker Pond diatom bottom sample dataset

description: Raw data for the Walker Pond diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/5n1e-zz93
title: Mukhrino testate amoebae surface sample dataset

description: Raw data for the Mukhrino testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/dhqk-2h22
title: Nautley River pollen dataset

description: Raw data for the Nautley River pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/dt3r-dm09
title: West Alkali Reservoir diatom dataset

description: Raw data for the West Alkali Reservoir diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/s46w-vg17
title: Lac Rich water chemistry dataset

description: Raw data for the Lac Rich water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/zy4s-yy21
title: Lake Seminole diatom bottom sample dataset

description: Raw data for the Lake Seminole diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.57760/sciencedb.j00139.00212
title: Coordinate inhibition of M1 macrophage polarization by FIT2-mediated lipid droplet biosynthesis and FABP5
title: Coordinate inhibition of M1 macrophage polarization by FIT2-mediated lipid droplet biosynthesis and FABP5

description: This study shows that lipid droplets (LDs) inhibit M1 macrophage polarization by regulating FABP5. FIT2-dependent LD formation suppresses M1 polarization, weakening antibacterial defense. Findings reveal a link between lipid metabolism and immune function.
description: This study shows that lipid droplets (LDs) inhibit M1 macrophage polarization by regulating FABP5. FIT2-dependent LD formation suppresses M1 polarization, weakening antibacterial defense. Findings reveal a link between lipid metabolism and immune function.
DOI: 10.21233/41r3-wc33
title: Moose Pass testate amoebae surface sample dataset

description: Raw data for the Moose Pass testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/4wdz-tn14
title: Depot Lake diatom bottom sample dataset

description: Raw data for the Depot Lake diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ey9r-km79
title: LDDsite1782 water chemistry dataset

description: Raw data for the LDDsite1782 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/7y8r-tg02
title: MCK 6 pollen surface sample dataset

description: Raw data for the MCK 6 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/0vwj-r172
title: Harvey diatom surface sample dataset

description: Raw data for the Harvey diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xez2-xd02
title: Nolen Blue Hole water chemistry dataset

description: Raw data for the Nolen Blue Hole water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.