cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3614447_d2
title: Additional file 4: of Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology

description: Transcripts that were differentially expressed in naĂŻve M. mercenaria as compared to QPX infected individuals. This file is a Microsoft Excel worksheet that contains separate lists of over- and under-expressed transcripts with their expression levels and fold change values given. (XLSX 128 kb)
DOI: 10.6084/m9.figshare.c.3614438_d6
title: Additional file 10: of Distinct transcriptome responses to water limitation in isohydric and anisohydric grapevine cultivars

description: List of the 269 annotated genes significantly modulated in berries with a FC value &gt;2 in at least one cultivar under WS. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3614447_d3
title: Additional file 2: of Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology

description: Differentially expressed (DE) sequences associated with M. mercenaria focal response against QPX. This file is a Microsoft Excel worksheet that contains separate lists of over- and under-expressed transcripts with their expression levels and fold change values given. (XLSX 143 kb)
DOI: 10.6084/m9.figshare.c.3614438_d7
title: Additional file 2: of Distinct transcriptome responses to water limitation in isohydric and anisohydric grapevine cultivars

description: The 5947 genes significantly modulated in leaves under our experimental conditions. (XLSX 2645 kb)
DOI: 10.6084/m9.figshare.c.3614438_d8
title: Additional file 4: of Distinct transcriptome responses to water limitation in isohydric and anisohydric grapevine cultivars

description: STEM analysis of the 1034 genes modulated in leaves. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.28021715
title: sps2020_all.csv

description: Data developed for spillover analysis: file contains sampling polygons across Australia.This is a pre-publication version. Further detail to be added once article is accepted.
DOI: 10.6084/m9.figshare.c.3614447_d4
title: Additional file 3: of Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology

description: Differentially expressed (DE) sequences associated with M. mercenaria systemic response against QPX. This file is a Microsoft Excel worksheet that contains separate lists of over- and under-expressed transcripts with their expression levels and fold change values given. (XLSX 327 kb)
DOI: 10.6084/m9.figshare.28021715.v1
title: sps2020_all.csv

description: Data developed for spillover analysis: file contains sampling polygons across Australia.This is a pre-publication version. Further detail to be added once article is accepted.
DOI: 10.6084/m9.figshare.c.3614438_d10
title: Additional file 6: of Distinct transcriptome responses to water limitation in isohydric and anisohydric grapevine cultivars

description: List of the 1236 genes differentially modulated between WS and WW conditions regardless of the genotype. (XLSX 198 kb)
DOI: 10.6084/m9.figshare.c.3614438_d11
title: Additional file 3: of Distinct transcriptome responses to water limitation in isohydric and anisohydric grapevine cultivars

description: The 1034 annotated genes significantly modulated in leaves with a FC value &gt;2 in at least one cultivar under WS. The data set indicates whether a gene was retrieved by the 12-class approach (12C), by the 6-class approach (6C) or if it was shared (S) between the two approaches. (XLSX 160 kb)
DOI: 10.15468/dl.ahp2cm
title: Occurrence Download

description: A dataset containing 1980 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Pungitius sinensis (Guichenot, 1869)"
 ]
}

 The dataset includes 1980 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032770-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614474_d1
title: Additional file 11: Table S6. of A systematic comparison of copy number alterations in four types of female cancer

description: GISTIC focal peaks for joint regions of CBS and PCF gains and losses. This table shows the GISTIC focal peaks of the overlapping regions between CBS and PCF. (XLSX 15 kb)
DOI: 10.15468/dl.8graf4
title: Occurrence Download

description: A dataset containing 358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-24.66903 15.00924,-24.70156 15.01187,-24.73576 14.95978,-24.75365 14.81719,-24.71209 14.78352,-24.65588 14.79983,-24.58169 14.99135,-24.66903 15.00924))"
 ]
}

 The dataset includes 358 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032771-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3614510_d3
title: Additional file 3: of Diel patterns in three-dimensional use of space by sea snakes

description: Three-dimensional space use by a representative Hydrophis elegans within the study site (Fig. 3c). Day-time core (50%-3DKUD; dark red) and extent (95%-3DKUD; light red) 3DKUD as well as night-time core (50%-3DKUD; dark blue) and extent (95%-3DKUD; light blue) 3DKUD are represented. Surrounding bathymetry and sea surface are also rendered to provide context. Black points represent the locations of acoustic receivers within the study site. For the interactive version of this data please visit https://dl.dropboxusercontent.com/u/31456301/3DSS/SM4/index.html . Close up version of this model is available in Additional file 5.
DOI: 10.6084/m9.figshare.c.3614474_d10
title: Additional file 7: Table S5. of A systematic comparison of copy number alterations in four types of female cancer

description: GISTIC focal peaks for selected α (CBS) and γ (PCF) - gains and losses. Table S5 reveals the GISTIC focal peaks of the selected values in Table S4. Indicated by asterisks (*) are the joint regions between cancer types for at least two cancers displaying a common genomic region, and (n) representing the number of events in each cohort. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3614474_d11
title: Additional file 1: Table S1. of A systematic comparison of copy number alterations in four types of female cancer

description: Additional clinical data for the Breast and Ovarian cohort. A summary of the clinicopathological characteristics for the breast and ovarian cohorts is available (XLSX 102 kb)
DOI: 10.6084/m9.figshare.c.3614510_d4
title: Additional file 4: of Diel patterns in three-dimensional use of space by sea snakes

description: Close up three-dimensional model of diel pattern in space use of a representative Hydrophis curtus within Cleveland Bay (Fig. 3b). Day-time core (50%-3DKUD; dark red) and extent (95%-3DKUD; light red) 3DKUD as well as night-time core (50%-3DKUD; dark blue) and extent (95%-3DKUD; light blue) 3DKUD are represented. Depth has been exaggerated for ease of viewing bathymetry. Sea surface represented at highest astronomical tide at Townsville Port. For the interactive version of this data please visit https://dl.dropboxusercontent.com/u/31456301/3DSS/SM3/index.html . Overall version of this model is available in Additional file 2.
DOI: 10.6084/m9.figshare.c.3614516_d3
title: Additional file 1: of Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome

description: Gene expression levels determined by RNA sequencing in X. campestris pv. raphani CFBP 5828R with empty vector or hrpG* plasmid. (XLSX 835 kb)
DOI: 10.6084/m9.figshare.c.3614510_d5
title: Additional file 5: of Diel patterns in three-dimensional use of space by sea snakes

description: Close up three-dimensional model of diel pattern in space use of a representative Hydrophis elegans within Cleveland Bay (Fig. 3d). Day-time core (50%-3DKUD; dark red) and extent (95%-3DKUD; light red) 3DKUD as well as night-time core (50%-3DKUD; dark blue) and extent (95%-3DKUD; light blue) 3DKUD are represented. Depth has been exaggerated for ease of viewing bathymetry. Sea surface represented at highest astronomical tide at Townsville Port. For the interactive version of this data please visit https://dl.dropboxusercontent.com/u/31456301/3DSS/SM5/index.html . Overall version of this model is available in Additional file 4.
DOI: 10.6084/m9.figshare.c.3614474_d13
title: Additional file 12: Table S7. of A systematic comparison of copy number alterations in four types of female cancer

description: Arm-level significant table for four studied cancers. Table S7 illustrates the significant arm-levels for the four different female cancer types. The colored arms show the significant ranges. Breast, ovarian, endometrial, and cervical cancers are colored in pink, green, purple, and brown, respectively. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3614474_d14
title: Additional file 4: Table S3. of A systematic comparison of copy number alterations in four types of female cancer

description: GISTIC focal peaks for female cancers – gains and losses. Table S3A shows the number of focal peaks for PCF-segmented input data to GISTIC and variable γ in a range of 10 to 90 for breast, ovarian, endometrial, and cervical cancers. Table S3B represents GISTIC focal peaks for CBS-segmented input data to GISTIC and variable α from 0.00001 to 0.1 for the above cohorts. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3614474_d15
title: Additional file 5: Table S4. of A systematic comparison of copy number alterations in four types of female cancer

description: Highest percentage of overlap between α (CBS) and γ (PCF) – gains and losses. Table S4A demonstrates the highest percentage of overlap between α (CBS) and γ (PCF) for amplification GISTIC focal peaks of female cancers. Table S4B shows the highest overlap of α and γ for deletion GISTIC focal peaks. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3614531_d1
title: Additional file 1: Table S1. of MMinte: an application for predicting metabolic interactions among the microbial species in a community

description: (XLSX 78 kb)
DOI: 10.6084/m9.figshare.c.3614573_d5
title: Additional file 6 of Reliable scaling of position weight matrices for binding strength comparisons between transcription factors

description: Table S1. (TXT 12.7KB)
DOI: 10.6084/m9.figshare.c.3614585_d1
title: Additional file 3: of Investigating the pertussis resurgence in England and Wales, and options for future control

description: Graphical User Interface porgramme to present pertussis simulation model results. (ZIP 8235 kb)
DOI: 10.6084/m9.figshare.c.3614588_d1
title: Additional file 1: of Initial central venous pressure could be a prognostic marker for hemodynamic improvement of polymyxin B direct hemoperfusion: a retrospective cohort study

description: Table S1. Results of univariate regression analysis for the difference in the vasopressor dependency index between before and 24Â h after PMX-DHP. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3614573_d7
title: Additional file 3 of Reliable scaling of position weight matrices for binding strength comparisons between transcription factors

description: Table S3. (TXT 0.232KB)
DOI: 10.6084/m9.figshare.c.3614597_d6
title: Additional file 6: of Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line

description: A: The Kaplan-Meier plots for the miRNAs and TFs. B: The information about the clinical data source for survival analyses for miRNAs and TFs are provided in excel sheet. (DOC 21Â kb)
DOI: 10.6084/m9.figshare.c.3614648_d2
title: Additional file 1: of Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

description: Table S1. Strains used in this study. Table S2. A total of 1039 normalized protein 14N/15N isotopic ratios including their mascot scores from 3 biological replicates quantified in Synechocystis sp. PCC6803 wild-type (WT) strain, ethanol-forming strain (SAA012) and lactic acid-forming strain (SAW041). Table S3. List of primers used in RT-qPCR. Table S4. List of proteins quantified in SAA012 that were signifcantly changed and its p-value from z-test. Table S5. List of proteins quantified in SAW041 that were signifcantly changed and its p-value from z-test. Table S6. Results of KEGG pathway enrichment analyses of the significantly altered proteins quantified in the ethanol-producing strain (a) and the lactic acid-producing strain (b).
DOI: 10.25919/wqfw-wn68
title: Parkes observations for project P1344 semester 2024OCTS_02

description: Fast radio bursts (FRBs) are millisecond-duration radio bursts of extragalactic origin. Since the discovery of the first FRB in the archival Parkes/Murriyang multibeam data, a broad dichotomy in population has emerged. Some FRBs have been seen to be repeating, while others are not, despite a significant amount of follow-up using different radio telescopes. The commissioning of new dedicated FRB detection systems has led to an exponential increase in the detected FRBs over the last decade. Despite &gt;700 FRBs published to date, there is still a lack of understanding about the physical mechanisms through which FRB emission is produced. Due to the possibility of detecting multiple bursts from the same source in a repeating FRB, it forms an ideal sample set to uncover the physics of the source (e.g., emission mechanism, progenitor surrounding media), and test possible progenitor models. The coherent upgrade to the FRB detection system to ASKAP is expected to detect ~1 FRB/week. However, due to the limited fractional bandwidth available with ASKAP and survey nature of the telescope, probing the spectro-polarimetric characteristics of repeating sources is non-optimal. Hence, the large bandwidth offered by the ultra wideband-low (UWL) on Parkes/Murriyang is an ideal instrument to follow-up repeating FRB sources discovered through CRACO. We propose using the unallocated time/Green Time on UWL to follow up repeater-like sources to study their wideband spectro-polarimetric characteristics.
DOI: 10.6084/m9.figshare.c.3614690_d5
title: Additional file 9: Table S8. of Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations

description: qRT-PCR primers. Primers used in the qRT-PCR amplification of genes and virus. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3614693_d3
title: Additional file 3 of Performance of an electronic health record-based phenotype algorithm to identify community associated methicillin-resistant Staphylococcus aureus cases and controls for genetic association studies

description: Figure S1: A: CA-MRSA GWAS results in European Americans. B: CA-MRSA GWAS results in African Americans. (ZIP 294Â kb)
DOI: 10.6084/m9.figshare.c.3614690_d6
title: Additional file 1: Table S1. of Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations

description: Differentially expressed genes in relation to MNSV infection. Deregulated genes associated with MNSV-Mα5 and MNSV-Mα5/3’264 as a function of time in Tendral and associated with MNSV-Mα5/3’264 as a function of time in Planters Jumbo. Gene Ontology terms (GO terms) that are statistically over or under-represented on each list of differentially expressed genes are listed in contiguous spread sheets. (XLSX 245 kb)
DOI: 10.6084/m9.figshare.c.3614690_d7
title: Additional file 7: Table S7. of Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations

description: List of unigenes represented in the microarray. The corresponding gene code from the genome sequencing [10] and the ICuGI code ( http://www.icugi.org ) are given. The average expression value of each gene in the microarray is shown for all virus/host/time/tissue combination. The annotation of each gene is also shown as described in each source (genome, Melogen or ICuGI). (XLSX 10703 kb)
DOI: 10.6084/m9.figshare.c.3614690_d8
title: Additional file 3: Table S3 of Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations

description: Significant Gene Ontology (GO) categories among the cultivar-specific genes deregulated by MNSV-Mα5/3’264. Gene Ontology terms (GO terms) that were statistically over or under-represented among the 1618 genes that were specifically deregulated by MNSV-Mα5/3’264 in Planters Jumbo and among the 2925 genes that were specifically deregulated by the same virus in Tendral. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3614690_d9
title: Additional file 6: Table S6. of Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations

description: Differentially expressed genes in directly inoculated leaves with MNSV and their associated significant GO terms. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.c.3614765_d6
title: Additional file 5: Table S5. of Functional development of the adult ovine mammary glandâ  insights from gene expression profiling

description: Gene ontology functional annotation clusters enriched in the ovine mammary gland during late pregnancy. Table S6. Gene ontology functional annotation clusters enriched in the ovine mammary gland during lactation. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3614804_d2
title: Additional file 7: Table S5. of High-density P300 enhancers control cell state transitions

description: Table S5: Cell-specific SE-associated miRNAs in T helper cells.(XLSX 35Â kb)
DOI: 10.20350/digitalcsic/16721
title: Crystal structures of Oligopeptide-Binding Proteins (OBP) of the Ami system [Dataset]

description: Crystal structures of Oligopeptide-Binding Proteins (OBP) of the Ami system.
DOI: 10.15468/dl.u394tb
title: Occurrence Download

description: A dataset containing 335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-101.30232558139535 17.120639534883722,-97.30232558139535 17.120639534883722,-97.30232558139535 21.120639534883722,-101.30232558139535 21.120639534883722,-101.30232558139535 17.120639534883722))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dendroctonus W.F.Erichson, 1836"
 ]
}

 The dataset includes 335 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032772-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20350/digitalcsic/16722
title: Exploring Synergistic and Antagonistic Interactions of MoS2 and Multi-Wall Carbon Nanotube additives in a Composite Top-of-Rail Friction Modificator

description: [Description of methods used for collection/generation of data] Tribology tests_data, The files contain raw friction coefficient data during tribology experiments, using a twin disk tribometer.
description: [Methods for processing the data] The data was procesed using data analysis and scientific programming software.
description: The effects of MoS2 and Multi-Wall Carbon Nanotube (MWCNT) additives onto thermal, mechanical and tribological properties of the vinyl ester polymer-matrix composites were systematically studied. Monocomponent and mixed additive compositions with concentrations ranged between 0 and 3 wt. % showed complex behaviours. Under oxidative environment, MoS2 suppressed high-temperature matrix decomposition process at 513 ºC, while MWCNTs suppressed the matrix decomposition process at 524 ºC. The samples with low MWCNT/MoS2 ratios showed two distinct glass transitions, while the samples with high MWCNT/MoS2 ratios presented a single transition around 100-120 °C. Tribological behaviour of steel-steel roiling-sliding simulating wheel-rail contact in presence of the composites significantly varied depending on the additives’ composition. The mixed-component composites yielded coefficient of traction close to the desired range 0.25-0.35. Wear of the “wheel” disk was mainly controlled by the composite capacity to form secondary transfer film by aggregation and compaction of wear debris. Wear of the “rail” disk likely depended on the capacity of the transfer layer on the “wheel” disk to release MoS2 and transfer it onto the “rail” disk.
description: File List: Thermal conductivity_data.xlsx Compression test_data.xlsx Traction test_data.xlsx DMA test_data.xlsx Pycnometry He_data.xlsx Tribology test_data.xlsx
DOI: 10.6084/m9.figshare.c.3614843_d2
title: Additional file 4: of Graph mining for next generation sequencing: leveraging the assembly graph for biological insights

description: Antibiotics resistance gene class enrichments. This spreadsheet file contains the counts for hits to antibiotics resistance gene classes in the generated transposase clusters. A Fisherâ  s test with FDR correction was used to determine if there were significant antibiotics resistance gene class enrichments for any of the clusters. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3614846_d2
title: Additional file 3: Table S3. of The transcriptome of Candida albicans mitochondria and the evolution of organellar transcription units in yeasts

description: RPKM values of C. albicans mitochondrial transcripts. RNA preparations from purified mitochondria were used, reads were mapped to the reference genome with the second repeat (IRb) removed to ensure unambiguous mapping of transcripts originating in repeat regions. (XLSX 9 kb)
DOI: 10.20350/digitalcsic/16723
title: Experimental data for Sugar diet affects Culex pipiens early-life mortality, biochemical parameters and immunocompetence

description: [Description of methods used for collection/generation of data] We experimentally evaluated how the survival rate, body mass, body composition (i.e. protein, lipid, glucose, glycogen), and immunocompetence (i.e. number of hemocytes) of Culex pipiens females were affected by sugar concentration in their diet. To do so, we reared field-captured larvae in the laboratory and the emerged mosquito females were randomly assigned to different concentrations of sucrose offered ad-libitum (mass/volume%: 0,5%, 1%, 2%, 4%, 8%, 16%). Mosquitoes were analyzed at three different ages, 7-, 14-, and 21- days post-emergence (dpe).
description: There are three Excell sheets, one for survival, one for nutrition and one for hemocytes. They are named according to this characteristics (survival, nutrition and hemocytes)
DOI: 10.6084/m9.figshare.c.3614843_d3
title: Additional file 3: of Graph mining for next generation sequencing: leveraging the assembly graph for biological insights

description: Distribution of genera for the generated transposase clusters. This file is a spreadsheet with the distribution of the genera found in each generated transposase cluster for the Crohnâ  s disease and healthy data sets. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3614804_d9
title: Additional file 6: Table S4. of High-density P300 enhancers control cell state transitions

description: Cell-specific SE-associated lncRNAs in T helper cells.(XLSX 58Â kb)
DOI: 10.6084/m9.figshare.c.3614846_d3
title: Additional file 5: Table S5. of The transcriptome of Candida albicans mitochondria and the evolution of organellar transcription units in yeasts

description: Primers, oligonucleotide probes and cloned PCR product probes used in this work. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3614843_d4
title: Additional file 6: of Graph mining for next generation sequencing: leveraging the assembly graph for biological insights

description: Total genome length estimation for NG50. This spreadsheet file contains the calculation of the average genome lengths for the complete reference sequences available through the NCBI RefSeq database for the most abundant genera in the Crohnâ  s and healthy data sets. The estimated total genome length is also calculated in this file. (XLSX 21 kb)