cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3613604_d2
title: Additional file 2: Table S1. of Metabolic clusters of breast cancer in relation to gene- and protein expression subtypes

description: Antibodies used for reverse phase protein array (RPPA). Table S2. Metabolite integrals for each of the samples included in the study. Table S3. Significantly different expressed genes between the three metabolic clusters. Table S4. Significantly different expressed genes between the metabolic clusters Mc1 and Mc2. Table S5. Significantly different expressed genes between the metabolic clusters Mc1 and Mc3. Table 6. Statistically over-represented annotation terms, according to DAVID, of differently expressed genes between metabolic cluster Mc1 and Mc2. Table S7. Statistically over-represented annotation terms, according to DAVID, of differently expressed genes between metabolic cluster Mc1 and Mc3. Table S8. Gene set enrichment analysis (GSEA) result for gene ontology (GO) gene sets. Metabolic cluster Mc1 was compared with Mc2 and Mc3. Table S9. Gene set enrichment analysis (GSEA) result for gene ontology (GO) gene sets. Metabolic cluster Mc1 was compared with Mc2. Table S10. Gene set enrichment analysis (GSEA) result for gene ontology (GO) gene sets. Metabolic cluster Mc3 was compared with Mc1 and Mc2. Table S11. Integrated pathway analysis result from the comparison of the metabolic clusters Mc1 compared to Mc2. Table S12. Integrated pathway analysis result from the comparison of the metabolic clusters Mc1 compared to Mc3. (XLSX 337 kb)
DOI: 10.6084/m9.figshare.c.3613694_d1
title: Additional file 1: of Sugammadex facilitates early recovery after surgery even in the absence of neuromuscular monitoring in patients undergoing laryngeal microsurgery: a single-center retrospective study

description: Available data. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3613682_d3
title: Additional file 12: of Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

description: Spike-in concentrations by design as used for reproduction. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3613682_d4
title: Additional file 6: of Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

description: R-Script for reproduction of analysis and figures of this study. (R 39 kb)
DOI: 10.6084/m9.figshare.c.3613646_d9
title: Additional file 14: Table S6. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

description: List of species used for phylogeny analysis along with Ocimum to depict taxonomical distribution of this species in plant kingdom.
DOI: 10.6084/m9.figshare.c.3613682_d5
title: Additional file 7: of Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

description: Dilution experiment mapping file as used for reproduction. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3613682_d6
title: Additional file 9: of Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

description: Dilution experiment OTU table as used for reproduction. (TXT 460 kb)
DOI: 10.6084/m9.figshare.c.3613646_d10
title: Additional file 19: Table S8. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

description: All the transcripts with their expression and validation at different level such as genome hit and blast hit results against non-redundant database of NCBI.
DOI: 10.6084/m9.figshare.c.3613682_d7
title: Additional file 11: of Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

description: Total 16S rDNA qRT-PCR measurements as used for reproduction. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3613727_d1
title: Additional file 3: of Land or sea? Foraging area choice during breeding by an omnivorous gull

description: Table of analyzed GPS data (.xls). Foraging trips of lesser black-backed gulls, tracked by GPS. The analyzed data are provided as an Excel file, with two sheets, ‘GPS_foraging_trip_data’ giving the analyzed variables, and ‘Metadata’ explaining these variables. (XLSX 384 kb)
DOI: 10.6084/m9.figshare.c.3613727_d2
title: Additional file 7: of Land or sea? Foraging area choice during breeding by an omnivorous gull

description: Agricultural field parameters (.xls). Vegetation parameters of the agricultural fields surveyed in on-site portion of the study, along with L. fuscus presence/absence counts, earthworm, other gull species and wader numbers throughout the study period (May-June 2013). (XLSX 17 kb)
DOI: 10.15468/dl.6jr9my
title: Occurrence Download

description: A dataset containing 956346 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Watervogels - Wintering waterbirds in Flanders, Belgium"
 ]
}

 The dataset includes 956346 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033149-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613790_d1
title: Additional file 4: of High-throughput discovery of post-transcriptional cis-regulatory elements

description: 8mer categories tested in the screen. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.c.3613745_d16
title: Additional file 11: of Comprehensive analysis of the endoplasmic reticulum stress response in the soybean genome: conserved and plant-specific features

description: A list of predicted/known orthologous genes involved in Glycine max and Arabidopsis thaliana plant-specific ER stress-mediated cell death pathways. (XLS 89Â kb)
DOI: 10.4228/zalf.1993.112
title: Weather Data 1993, Muencheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz-Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis. The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type. In 1993, data have been collected for: leaf wetness (%); soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soil temperatur in 50cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 20cm above ground (°C); air temperature, 2m above ground (°C); precipitation (mm); wind velocity (m/s); evaporation (mm)
DOI: 10.6084/m9.figshare.c.3613799_d1
title: Additional file 3: Table S3. of Immune response after intermittent minimally invasive intraocular pressure elevations in an experimental animal model of glaucoma

description: Summary of the distribution of microglia in the retinal layers. Microglia are distributed in diverse layers of the retina. In control eyes, most microglia occur in the ganglion cell layer (GCL) and the inner nuclear layer (INL). Eyes of iOHT group show no significant changes for microglia alterations between retinal layers. In contrast, a shifting of microglia populations can be observed from the inner nuclear layer to the ganglion cell layer in both eyes of Belimumab-treated animals. Data are given as mean number of Iba1-positive cells per mm retina ± standard deviation (SD). * indicates individual retinal layers without statistically significant changes. Statistically significant p values are highlighted in bold and red. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3613799_d2
title: Additional file 2: Table S2. of Immune response after intermittent minimally invasive intraocular pressure elevations in an experimental animal model of glaucoma

description: Course of IOP in awake Long Evans rats. The IOP of awake Long Evans rats stays in physiological ranges, and statistical analysis reveals consistent IOP in the control group as well as in fellow and injured eyes of the experimental groups at each time point (p
DOI: 10.6084/m9.figshare.c.3613790_d12
title: Additional file 13: of High-throughput discovery of post-transcriptional cis-regulatory elements

description: RBP motifs that were tested in the main screen. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3613790_d13
title: Additional file 3: of High-throughput discovery of post-transcriptional cis-regulatory elements

description: Read counts for each 8mer from the pilot screen. (XLS 1369Â kb)
DOI: 10.5284/1124517
title: Images from Historic Building Recording at Whelly Hill Farm, Hartlepool, County Durham, 2024

description: This collection comprises images from a Descriptive Buildings Record (Level 2) and Basic Building Survey (Level 1) at Whelly Hill Farm undertaken by Cotswold Archaeology in April 2024. There has been a farm on the Site from the early 18th century and the buildings have been substantially changed and modified over a number of years up to the 1970s.
DOI: 10.5284/1124607
title: Images from Archaeological Trial Trenching at Upper Callerton, Newcastle Upon Tyne, 2022

description: This collection comprises images from trial trenching at Upper Callerton carried out by Rocket Heritage and Archaeology Ltd in April 2022. Small drainage gullies with evidence of coal and metalworking were found, along with potentially coal cart tracks, a large bell pit and three modern land drains.
DOI: 10.6084/m9.figshare.c.3613931_d1
title: Additional file 1: Table S1. of WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis

description: Genes which are up-regulated more than 2-fold in wrky6 + P. indica in LP (log2 value ≥ 1 or ≤ −1). (XLS 200 kb)
DOI: 10.5284/1124599
title: Images from Archaeological Building Recording at Strawberry House, Leazes Park Road, Newcastle upon Tyne, 2023

description: This collection comprises images from archaeological building recording of Strawberry House, off Leazes Park Road carried out by Archaeological Services Durham University between October and November 2023. Strawberry House was thought to have been built in the later 18th century as a suburban villa on the edge of the Town Moor.
DOI: 10.6084/m9.figshare.c.3613937_d2
title: Additional file 2 of Generalized method of moments for estimating parameters of stochastic reaction networks

description: Matlab code and data. This file contains the Matlab codes and samples which were used to produce the results. (GZ 9349 kb)
DOI: 10.6084/m9.figshare.c.3613934_d2
title: Additional file 7: Table S3. of Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma

description: Sequencing statistics for bulk cells and single-cell RNA-seq. Mapping information (to the hg19 genome reference) was obtained from log files after running STAR. RNA-SeQC was applied to generate a series of quality control metrics. (XLSX 21.4 kb)
DOI: 10.5284/1124423
title: Images from Analytical Buildings Recording of a Barn near Lane Side Farm, Grindleton, Lancashire, 2024

description: This collection comprises images from an Analytical Buildings Record (level 3) survey of a Barn near Lane Side Farm undertaken by Stephen Haigh Buildings Archaeologist in May 2024. The site comprises an 18th century combination barn with stable and hayloft in one end, and two 19th century extensions.
DOI: 10.6084/m9.figshare.c.3613952_d5
title: MOESM3 of Sugarcane transgenics expressing MYB transcription factors show improved glucose release

description: Additional file 3: Table S2. Normalized lignin biosynthetic genes ΔCt values for MYB-expressing plants. Values normalized against average control ΔCt value for each gene. Values represent initial expression screening of leaf tissue and post-harvest expression results from young internode tissue and maturing internode tissue. NE: Normalized expression with standard error of the mean shown. Samples significantly different to the controls after ANOVA, p = 0.05, are shown in bold. Control n = 3. Plants are listed in ascending total lignin content for each line.
DOI: 10.6084/m9.figshare.c.3613961_d2
title: Additional file 2: of Next-generation sequencing-based detection of germline L1-mediated transductions

description: Is a list of all L1-transductions discovered in this study and their validation status in macaque, orangutan, chimpanzee and human. (XLSX 109Â kb)
DOI: 10.5284/1124425
title: Images from Analytical Buildings Recording at Old Hall Farm, Burnley, Lancashire, 2024

description: This collection comprises images from a Analytical Buildings Record (level 3) survey at Old Hall Farm undertaken by Stephen Haigh Buildings Archaeologist in June 2024. Old Hall Farm comprises a stone-built range containing a three-unit farmhouse with rear extensions, and a five-bay former combination barn, the latter converted to living accommodation in the late 20th century.
DOI: 10.6084/m9.figshare.c.3613871_d21
title: Additional file 2: of Systems analysis of non-parenchymal cell modulation of liver repair across multiple regeneration modes

description: Matlab code executing the model used in this study. (M 10Â kb)
DOI: 10.5284/1124603
title: Images and a Report from an Archaeological Watching Brief at Glebe House, Prescot, Merseyside, 2024

description: This collection comprises images and a report from a watching brief at Glebe House, Prescot carried out by The Archaeology Co. in March 2024. The structural elements seen in the trenches were interpreted as components of the former rectory.
DOI: 10.5284/1124598
title: Images and a Report from a Historic building Recording Survey at Stanmore Lodge, Sandtoft, North Lincolnshire, 2023

description: This collection comprises images and a report from a photographic and metric survey of Stanmore Lodge carried out by York Archaeology in March 2023. The historic building recording was undertaken to provide a record of the buildings and surface remains of former RAF structures associated with Sandtoft Airfield (WW2), around Stanmore Lodge.
DOI: 10.5284/1124518
title: Images and a Report from Historic Buildings Recording at Barn south of Grove House, Chipping, 2024

description: This collection comprises images and a report from a Descriptive Buildings Record (level 2) survey of a Barn to the south of Grove House, Chipping undertaken by The Archaeology Co. in May 2024. The barn was constructed in the late 19th century and appears to have been a combination barn, with shippon to the west side.
DOI: 10.5284/1124535
title: Images and a Report from Historic Building Recording at Bunker 9/8 Draw Well Road, Knowsley Industrial Park, Merseyside, 2024

description: This collection comprises images and a report from a Descriptive Buildings Record (level 2) survey at Bunker 9/8, Draw Well Road, Knowsley Industrial Park. Work was carried out by The Archaeology Co. between May and June 2024. The recording work identified and noted features such as blocked, altered or introduced openings and evidence for phasing and historical additions or alterations to the building.
DOI: 10.6084/m9.figshare.c.3614051_d1
title: Additional file 1: of Automatic detection of ventilatory modes during invasive mechanical ventilation

description: The database on which this study is based. (XLS 77 kb)
DOI: 10.6084/m9.figshare.c.3614081_d5
title: Additional file 5: Table S4. of Novel factors of Anopheles gambiae haemocyte immune response to Plasmodium berghei infection

description: Oocysts and melanised ookinetes dataset. (XLSX 195 kb)
DOI: 10.6084/m9.figshare.c.3614105_d1
title: Additional file 1: Table S1. of Genetic heterogeneity of actionable genes between primary and metastatic tumor in lung adenocarcinoma

description: Comparion of individual mutations between primary lesion and metastatic L/N. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3614108_d1
title: Additional file 5: of Widespread parainflammation in human cancer

description: Results from a differential expression analysis of organoid cultures from APC-mutated normal gut epithelium (MIN) versus adenomatous polyps of APCmin/+ mice (Adenoma). See â  Methodsâ   for organoid culture. Each set has three biological replicates. Raw reads and counts are available at the GEO under accession GSE81836. The analysis was performed using the RSEM software package. (XLSX 773 kb)
DOI: 10.6084/m9.figshare.c.3614093_d2
title: Additional file 2: of A transcriptome-based model of central memory CD4 T cell death in HIV infection

description: CD4 TCM cell signature in HIV infection. Table that lists the genes that were differentially expressed by TCM cells from patients with HIV, constituting the HIV TCM signature. (XLS 56 kb)
DOI: 10.6084/m9.figshare.c.3614108_d2
title: Additional file 7: of Widespread parainflammation in human cancer

description: Parainflammation (PI) scores for 634 carcinoma cell lines from the CCLE project. The PI score is calculated using ssGSEA for the 40 PI genes. (XLSX 69 kb)
DOI: 10.5281/zenodo.10371467
title: Data for a publication "Exploring the microstructure, mechanical properties, and corrosion resistance of innovative bioabsorbable Zn-Mg-(Si) alloys fabricated via powder metallurgy techniques"

description: These data are published as part of the paper: “Exploring the microstructure, mechanical properties, and corrosion resistance of innovative bioabsorbable Zn-Mg-(Si) alloys fabricated via powder metallurgy techniques” published in journal: “Journal of Materials Research and Technology”.
DOI: 10.5281/zenodo.10371468
title: Data for a publication "Exploring the microstructure, mechanical properties, and corrosion resistance of innovative bioabsorbable Zn-Mg-(Si) alloys fabricated via powder metallurgy techniques"

description: These data are published as part of the paper: “Exploring the microstructure, mechanical properties, and corrosion resistance of innovative bioabsorbable Zn-Mg-(Si) alloys fabricated via powder metallurgy techniques” published in journal: “Journal of Materials Research and Technology”.
DOI: 10.5281/zenodo.7418734
title: Vertical hydrography profiles from CTD rosette downcasts during PolarFront cruise 2022-05

description: Hydrography data from CTD (SBE911plus, Seabird Inc.) profiles. Rosette equipped with the following sensors:



Conductivity

Temperature

Pressure

Fluorometer

Turbidity

PAR

Oxygen


Update December 2024

The salinity and temperature sensors were calibrated against another CTD from a moored instrument by Ragnheid Skogseth at UNIS, the University Centre in Svalbard. A relatively large drift in temperature was observed. To convert temperature (T) and salinity (S) to calibrated values apply the following equations to e.g. data from stnrxxxx_bin.cnv

T_new = T_old + 0.12S_new = 1.0115 * S_old – 0.5343

The following is quoted verbatim from chapter 1 in the cruise report (Basedow, 2022):



Hydrographic data were collected by a variety of sensors mounted on vertical profiling platforms, towed platforms and autonomous gliders. Combined, these platforms provided detailed information at stations, high-resolution measurements across the polar front, and longer-term measurements by the gliders. During the cruise, hydrographic measurements were taken at stations using the main rosette equipped with 12 5-L Niskin bottles, CTD-F, PAR and other sensors (Table 1.1) and using a smaller rosette frame equipped with CTD-F, LOPC, LISST and WBAT (Table 1.2, Fig. 1.1). Both platforms were deployed vertically until 5-10 m above the bottom for the main platform and down to 300 m for the platform with the LOPC, this rosette sampling three profiles at selected stations.

In total 14 vertical profiles were sampled by the rosette with the water bottles (Table 1.1) at our 6 main stations (PF1 to PF6). Water samples for biological analyses were taken from selected depths and a bottom water samples was collected at each station for calibration of the conductivity sensor ashore. Water samples for chlorophyll a will be used to calibrate the fluorescence sensor. CTD data from this rosette were processed using the SBEDataProcessing-Win32 software. Only the values from the CTD downcast were used to avoid turbulence caused by the rosette on the upcast. The data were convertedto physical units, filtered for outliers and bin-averaged over 1 m bins. 


References

Sünnje Basedow, Nicolas Gosset, Torkel Granaas, Eva Leu (2022). Hydrography. In: Malin Daase (ed.) (2022). PolarFront May 2022 Cruise Report. Zenodo. https://doi.org/10.5281/zenodo.7128746
DOI: 10.5281/zenodo.7418733
title: Vertical hydrography profiles from CTD rosette downcasts during PolarFront cruise 2022-05

description: Hydrography data from CTD (SBE911plus, Seabird Inc.) profiles. Rosette equipped with the following sensors:



Conductivity

Temperature

Pressure

Fluorometer

Turbidity

PAR

Oxygen


Update December 2024

The salinity and temperature sensors were calibrated against another CTD from a moored instrument by Ragnheid Skogseth at UNIS, the University Centre in Svalbard. A relatively large drift in temperature was observed. To convert temperature (T) and salinity (S) to calibrated values apply the following equations to e.g. data from stnrxxxx_bin.cnv

T_new = T_old + 0.12S_new = 1.0115 * S_old – 0.5343

The following is quoted verbatim from chapter 1 in the cruise report (Basedow, 2022):



Hydrographic data were collected by a variety of sensors mounted on vertical profiling platforms, towed platforms and autonomous gliders. Combined, these platforms provided detailed information at stations, high-resolution measurements across the polar front, and longer-term measurements by the gliders. During the cruise, hydrographic measurements were taken at stations using the main rosette equipped with 12 5-L Niskin bottles, CTD-F, PAR and other sensors (Table 1.1) and using a smaller rosette frame equipped with CTD-F, LOPC, LISST and WBAT (Table 1.2, Fig. 1.1). Both platforms were deployed vertically until 5-10 m above the bottom for the main platform and down to 300 m for the platform with the LOPC, this rosette sampling three profiles at selected stations.

In total 14 vertical profiles were sampled by the rosette with the water bottles (Table 1.1) at our 6 main stations (PF1 to PF6). Water samples for biological analyses were taken from selected depths and a bottom water samples was collected at each station for calibration of the conductivity sensor ashore. Water samples for chlorophyll a will be used to calibrate the fluorescence sensor. CTD data from this rosette were processed using the SBEDataProcessing-Win32 software. Only the values from the CTD downcast were used to avoid turbulence caused by the rosette on the upcast. The data were convertedto physical units, filtered for outliers and bin-averaged over 1 m bins. 


References

Sünnje Basedow, Nicolas Gosset, Torkel Granaas, Eva Leu (2022). Hydrography. In: Malin Daase (ed.) (2022). PolarFront May 2022 Cruise Report. Zenodo. https://doi.org/10.5281/zenodo.7128746
DOI: 10.5281/zenodo.14441613
title: Supplementary materials and data sources for the study titled "Melatonin and its nuclear receptor-mediated rhythmic signals exhibit bidirectional regulatory effects on the state of hair follicle stem cells"
DOI: 10.5281/zenodo.14441614
title: Supplementary materials and data sources for the study titled "Melatonin and its nuclear receptor-mediated rhythmic signals exhibit bidirectional regulatory effects on the state of hair follicle stem cells"