cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5286/isis.e.rb1920383-1
title: Characterization of three detached components of the south Gate of Firenze Baptistery through TOF neutron diffraction and NRCA

description: The South Gate of Florence Baptistery is a 3 meters high gilded bronze artifact designed by Andrea Pisano and cast by Lorenzo DAvanzo and co-workers between 1329 and 1336. It is one of the oldest Middle Ages bronze gates in existence in Europe. In order to gain the highest amount of information about the gate manufacturing method, we plan to use neutron and muon techniques on three detached components. Our goal consists in the investigation of the casting and gilding manufacturing procedures by identifying: a) number and position of the casting channels; b) composition and homogeneity of the brass alloy in the different areas; c) general quality of the casting through the identification of the presence and size of bubbles, flaws and defects; d) composition and thickness of the mercury amalgam gilding. Diffraction and NRCA will be used to support ansewers for all questions.
DOI: 10.17632/6pxcn5k3sx.1
title: Data for: Single and dual metal-oxides as promising supports for carbon monoxide removal from an actual syngas

description: This dataset contains the information of activity, selectivity and stability tests of carbon monoxide removal from syngas using Au-Cu catalysts supported on several metal-oxides (i.e., CeO2, SiO2, ZrO2, Al2O3, La2O3, Fe2O3, CeO2-SiO2, CeO2-ZrO2 and CeO2-Al2O3). Reaction condition and characterization data of BET area, CO-FTIR, TGA, TPR and OSC are also included.
DOI: 10.17632/9ch4kwbmnz.1
title: Light IV parameters

description: Periodic Inverse Nanopyramid Gratings for Light Management in Silicon Heterojunction Devices and Comparison with Random Pyramid Texturing
DOI: 10.17632/jfz24nf2cf.2
title: Phylogenetic and phenotypic relationships in the subcomplex Triatoma sordida (Hemiptera: Reduviidae: Triatominae)
DOI: 10.17632/xmfjwbkrfd.1
title: Geochronology database for the manuscript: Strain partitioning in highly oblique rift settings: Inferences from the southwestern margin of the Gulf of California (Baja California Sur, México)

description: Supporting Information for Strain partitioning in highly oblique rift settings: Inferences from the southwestern margin of the Gulf of California (Baja California Sur, México) For publication in Tectonics, AGU Publications
DOI: 10.5281/zenodo.3367321
title: GAPDH Purification

description: Huntington’s Disease (HD) is a hereditary neurodegenerative disease; the cause of which is due to a CAG repeat extension in the HTT Gene. This extension is then translated into an elongation of exon 1 which is primarily composed of a disordered PolyQ repeat. Although the cause is known, the mechanism by which this extension affects the function of Huntingtin (HTT), the protein produced by the HTT Gene, has yet to be fully understood. A part of this difficulty is our lack of understanding of the role of normal HTT in our cells. To further our understanding of the role of HTT, we at the SGC have set out to explore the HTT interactome, which will give us a better idea of what specific interactions are modulated in HD. Our first step on this journey was to conduct a literature review alongside a BioID experiment to come up with a list of putative huntingtin interaction partners. One of the hits on the list was GAPDH. This means that we must obtain a pure sample of GAPDH for use in future experiments to further validate the claim that these proteins interact.
description: Funding Acknowledgment: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG,Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.3355330
title: Dataset for "Nanopore-based genome assembly and the evolutionary genomics of basmati rice"

description: <strong>Description of uploaded files:</strong> Basmati334.basmati.not_scaffolded.fa - Polished genome assembly for Basmati 334 but not scaffolded. Basmati334.basmati.not_scaffolded.sorted.gff - Gene annotation for the assembly Basmati334.basmati.not_scaffolded.fa Basmati334.basmati.ragoo_scaffold.fa - Polished genome assembly for Basmati 334 and scaffolding with RaGOO using the Nipponbare RAPDB1.0 as reference genome. Basmati334.basmati.ragoo_scaffold.sorted.gff - Gene annotation for the assembly Basmati334.basmati.ragoo_scaffold.fa Basmati334.basmati.ragoo_scaffold.repeatmasker.bed - Repetitive DNA coordinates for the assembly Basmati334.basmati.ragoo_scaffold.fa CONSEL.tar.gz - Files used for CONSEL analysis - Folder CONSEL/PHYLOGENY_TEST/ contains the input files for CONSEL - Folder CONSEL/CONSEL_RESULT/ contains the CONSEL test results DADI_ANALYSIS.tar.gz - Input file for dadi analysis and scripts used for dadi modeling DomSufid.sadri.not_scaffolded.fa - Polished genome assembly for Dom Sufid but not scaffolded. DomSufid.sadri.not_scaffolded.sorted.gff - Gene annotation for the assembly DomSufid.sadri.not_scaffolded.fa DomSufid.sadri.ragoo_scaffold.fa - Polished genome assembly for Dom Sufid and scaffolding with RaGOO using the Nipponbare RAPDB1.0 as reference genome. DomSufid.sadri.ragoo_scaffold.sorted.gff - Gene annotation for the assembly DomSufid.sadri.ragoo_scaffold.fa DomSufid.sadri.ragoo_scaffold.repeatmasker.bed - Repetitive DNA coordinates for the assembly DomSufid.sadri.ragoo_scaffold.fa Four_rice_population.vcf.gz - Filtered SNP VCF file used in the basmati population relationship with japonica and aus. MULTIZ_ALIGNMENT.tar.gz - Reference genome alignment using Nipponbare RAPDB1.0 as reference and aligning various Oryza de novo genome assemblies Multi_Oryza_gene_FASTAs.tar.gz - Using the alignments from MULTIZ_ALIGNMENT/ pulled out coding DNA sequences of each Nipponbare RAPDB1.0 gene Obarthii_outgroup_AlignedToBasmatiScaffolded_genome.fa - O. barthii reference genome sequence was aligned to scaffolded Basmati 334 reference genome. For every Basmati 334 genome coordinate was converted into a O. barthii sequence resulting in a basmati-ized O. barthii genome sequence. Not alignable regions were indicated as 'N'. Only_basmati_rice_population.vcf.gz - Filtered SNP VCF file used in the basmati population analysis. Oryza_LTR_DivergenceTime.txt - LTR retrotransposon annotated in various Oryza reference genomes and their estimated insertion time (based on the divergence between the LTRs). TWISST.tar.gz - TWISST input and results file. - Four_rice_population.geno.gz, genotype file generated from the genomic_general from S. Martin and used as input for TWISST analysis. - *.trees.gz phylogenetic trees generated from sliding windows - *.data.tsv sliding window coordinates - *.weights.csv.gz topology weights
DOI: 10.5281/zenodo.3367312
title: Dataset S1

description: Protein alignments in fasta format and phylogenetic trees in newick format.
DOI: 10.5281/zenodo.3355329
title: Dataset for "Nanopore-based genome assembly and the evolutionary genomics of basmati rice"

description: <strong>Description of uploaded files:</strong> Basmati334.basmati.not_scaffolded.fa - Polished genome assembly for Basmati 334 but not scaffolded. Basmati334.basmati.not_scaffolded.sorted.gff - Gene annotation for the assembly Basmati334.basmati.not_scaffolded.fa Basmati334.basmati.ragoo_scaffold.fa - Polished genome assembly for Basmati 334 and scaffolding with RaGOO using the Nipponbare RAPDB1.0 as reference genome. Basmati334.basmati.ragoo_scaffold.sorted.gff - Gene annotation for the assembly Basmati334.basmati.ragoo_scaffold.fa Basmati334.basmati.ragoo_scaffold.repeatmasker.bed - Repetitive DNA coordinates for the assembly Basmati334.basmati.ragoo_scaffold.fa CONSEL.tar.gz - Files used for CONSEL analysis - Folder CONSEL/PHYLOGENY_TEST/ contains the input files for CONSEL - Folder CONSEL/CONSEL_RESULT/ contains the CONSEL test results DADI_ANALYSIS.tar.gz - Input file for dadi analysis and scripts used for dadi modeling DomSufid.sadri.not_scaffolded.fa - Polished genome assembly for Dom Sufid but not scaffolded. DomSufid.sadri.not_scaffolded.sorted.gff - Gene annotation for the assembly DomSufid.sadri.not_scaffolded.fa DomSufid.sadri.ragoo_scaffold.fa - Polished genome assembly for Dom Sufid and scaffolding with RaGOO using the Nipponbare RAPDB1.0 as reference genome. DomSufid.sadri.ragoo_scaffold.sorted.gff - Gene annotation for the assembly DomSufid.sadri.ragoo_scaffold.fa DomSufid.sadri.ragoo_scaffold.repeatmasker.bed - Repetitive DNA coordinates for the assembly DomSufid.sadri.ragoo_scaffold.fa Four_rice_population.vcf.gz - Filtered SNP VCF file used in the basmati population relationship with japonica and aus. MULTIZ_ALIGNMENT.tar.gz - Reference genome alignment using Nipponbare RAPDB1.0 as reference and aligning various Oryza de novo genome assemblies Multi_Oryza_gene_FASTAs.tar.gz - Using the alignments from MULTIZ_ALIGNMENT/ pulled out coding DNA sequences of each Nipponbare RAPDB1.0 gene Obarthii_outgroup_AlignedToBasmatiScaffolded_genome.fa - O. barthii reference genome sequence was aligned to scaffolded Basmati 334 reference genome. For every Basmati 334 genome coordinate was converted into a O. barthii sequence resulting in a basmati-ized O. barthii genome sequence. Not alignable regions were indicated as 'N'. Only_basmati_rice_population.vcf.gz - Filtered SNP VCF file used in the basmati population analysis. Oryza_LTR_DivergenceTime.txt - LTR retrotransposon annotated in various Oryza reference genomes and their estimated insertion time (based on the divergence between the LTRs). TWISST.tar.gz - TWISST input and results file. - Four_rice_population.geno.gz, genotype file generated from the genomic_general from S. Martin and used as input for TWISST analysis. - *.trees.gz phylogenetic trees generated from sliding windows - *.data.tsv sliding window coordinates - *.weights.csv.gz topology weights
DOI: 10.5281/zenodo.3366394
title: sirselim/immunecell_methylation_paper_data: First release of data for immune cell epigenetics (methylation) manuscript

description: This is the first release of the data to be made public and accessible with the manuscript.
DOI: 10.21227/zgsg-f903
title: The USyd Campus Dataset

description: Vision and lidar are complementary sensors that are incorporated into many applications of intelligent transportation systems. These sensors have been used to great effect in research related to perception, navigation and deep-learning applications. Despite this success, the validation of algorithm robustness has recently been recognised as a major challenge for the massive deployment of these new technologies. It is well known that algorithms and models trained or tested with a particular dataset tend not to generalise well for other scenarios. For certain applications, autonomous vehicles in particular, algorithm failures can lead to potentially catastrophic consequences. To minimise this risk, it is essential to evaluate the robustness and reliability of algorithms before deploying them in real life applications. This paper presents a long-term, large-scale dataset collected over the period of 1.5 years on a weekly basis over the University of Sydney campus and surrounds. The USyd Campus Dataset has been designed to aid in the development, validation and testing of algorithm robustness under a wide variety of conditions. It includes multiple sensor modalities and covers various environmental conditions as well as diverse changes to illumination, scene structure, and pedestrian/vehicle traffic volumes. The dataset also includes a semantic segmentation dataset with different illumination conditions and camera perspectives, and a ‘Road’ class image dataset which is automatically generated using lidar. To facilitate the dataset use by researchers and practitioners, we also provide a set of development tools for the analysis and visualisation of the dataset.
DOI: 10.5281/zenodo.3366393
title: sirselim/immunecell_methylation_paper_data: First release of data for immune cell epigenetics (methylation) manuscript

description: This is the first release of the data to be made public and accessible with the manuscript.
DOI: 10.15468/0fw3ny
title: Peltoperlopsis mengmanensis sp. nov., the second species of Peltoperlopsis (Plecoptera: Peltoperlidae) from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chen, Zhi-Teng (2019): Peltoperlopsis mengmanensis sp. nov., the second species of Peltoperlopsis (Plecoptera: Peltoperlidae) from China. Zootaxa 4656 (1): 177-182, DOI: https://doi.org/10.11646/zootaxa.4656.1.10
DOI: 10.5519/qd.55jxdk80
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4 records)
DOI: 10.17632/94zs7px9pz.1
title: Data for: Ecological snapshot of a Panopea population within their traces (Pliocene, Agua Amarga subbasin, SE Spain)

description: It is provided a R code to compute a histogram of size frequencies, with bivalve length as the variable combined with a box & whisker plot. It was used to characterize the ontogenetic stages of the Panopea individuals analyzed at the Agua Amarga outcrop (SE Spain). Necessary data including Panopea length are provided in "Panopea and S. phiale measurements.xlsx" file.
DOI: 10.25345/c5wh3w
title: MassIVE MSV000084200 - DECA, a comprehensive, automatic post-processing program for HDX-MS data
title: Data from the following publication: D. Narang, W. Chen, C. G. Ricci, E. A. Komives, RelA-Containing NFkappaB Dimers Have Strikingly Different DNA-Binding Cavities in the Absence of DNA. Journal of molecular biology 430, 1510-1520 (2018). Used as sample dataset for manuscript.
DOI: 10.15468/obcf8h
title: Leafhopper tribe Coelidiini (Hemiptera: Cicadellidae: Coelidiinae) of the Indian subcontinent

description: This dataset contains the digitized treatments in Plazi based on the original journal article Meshram, Naresh M. (2019): Leafhopper tribe Coelidiini (Hemiptera: Cicadellidae: Coelidiinae) of the Indian subcontinent. Zootaxa 4653 (1): 1-91, DOI: https://doi.org/10.11646/zootaxa.4653.1.1
DOI: 10.15468/pkbngj
title: A new species of the genus Toccolosida Walker, 1863 from India (Lepidoptera: Pyralidae: Pyralinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Singh, Navneet, Chandra, Kailash, Kirti, Jagbir Singh, Ranjan, Rahul (2019): A new species of the genus Toccolosida Walker, 1863 from India (Lepidoptera: Pyralidae: Pyralinae). Zootaxa 4656 (1): 189-192, DOI: https://doi.org/10.11646/zootaxa.4656.1.12
DOI: 10.5061/dryad.11q00n4/1
title: Dryad Item 10.5061/DRYAD.11Q00N4/1

description: (:tba)
DOI: 10.5281/zenodo.3366397
title: Social contact data for China mainland

description: Social contact data for China mainland
DOI: 10.5281/zenodo.3366396
title: Social contact data for China mainland

description: Social contact data for China mainland
description: {"references": ["Zhang, J., et al. Patterns of social contact and contact with animals in Shanghai, China. Sci Rep 9,15141 (2019)"]}
DOI: 10.5286/isis.e.rb1900131
title: Investigation of Magnetic Structures in the Monoclinic and Orthorhombic Polymorphs of Type-II Multiferroics MnSb2S4

description: Ferroelectricity induced by magnetic ordering with certain type of magnetic structure has received much attention because it provides opportunity to manipulate magnetization by electric field or vice versa. We have discovered ferroelectricity in two different phases of MnSb2S4 below the magnetic ordering temperature. We need to understand the type of magnetic structure which is responsible for inducing ferroelectricity in these phases. For this purpose we would like to perform neutron diffraction in the two phases of MnSb2S4.
DOI: 10.5286/isis.e.rb1900131-1
title: Investigation of Magnetic Structures in the Monoclinic and Orthorhombic Polymorphs of Type-II Multiferroics MnSb2S4

description: Ferroelectricity induced by magnetic ordering with certain type of magnetic structure has received much attention because it provides opportunity to manipulate magnetization by electric field or vice versa. We have discovered ferroelectricity in two different phases of MnSb2S4 below the magnetic ordering temperature. We need to understand the type of magnetic structure which is responsible for inducing ferroelectricity in these phases. For this purpose we would like to perform neutron diffraction in the two phases of MnSb2S4.
DOI: 10.5286/isis.e.rb1920077
title: Magnetic structure of the Weyl semimetal Eu2Ir2O7 : A powder neutron diffraction study

description: Eu2Ir2O7 is a ceramic oxide showing fascinating Weyl semimetallic state. It is associated with an insulator to metal transition below 120 K with the simultaneous long range magnetic ordering. In our recent study on the material, we found enhanced metallicity and anomalous temperature variation of resistivity and heat capacity on 10% Sr dopoing at the Eu site. The topological Weyl state can be related to the magnetic structure of the material, and it is important to know the nature of the magnetic ordering in these materials. Here we propose a powder neutron diffraction experiment between 300-10 K on pure Eu2Ir2O7 and its 10% Sr doped counterpart on the WISH time of flight diffractometer. The work will not only help us to identify the magnetic structure of this interesting material, but will also help us to determine whether any ordered magnetic moment is residing at the Eu site or not.
DOI: 10.5286/isis.e.rb1920077-1
title: Magnetic structure of the Weyl semimetal Eu2Ir2O7 : A powder neutron diffraction study

description: Eu2Ir2O7 is a ceramic oxide showing fascinating Weyl semimetallic state. It is associated with an insulator to metal transition below 120 K with the simultaneous long range magnetic ordering. In our recent study on the material, we found enhanced metallicity and anomalous temperature variation of resistivity and heat capacity on 10% Sr dopoing at the Eu site. The topological Weyl state can be related to the magnetic structure of the material, and it is important to know the nature of the magnetic ordering in these materials. Here we propose a powder neutron diffraction experiment between 300-10 K on pure Eu2Ir2O7 and its 10% Sr doped counterpart on the WISH time of flight diffractometer. The work will not only help us to identify the magnetic structure of this interesting material, but will also help us to determine whether any ordered magnetic moment is residing at the Eu site or not.
DOI: 10.5286/isis.e.rb1920142
title: Magnetic structure determination of noncentrosymmetric Kondo lattice antiferromagnet CeIrSi3

description: CeIrSi3 belongs to the family of noncentrosymmetric heavy-fermion superconductors, which have attracted significant attention for their distinct unconventional superconducting ground state characterized by mixed spin-singlet and spin-triplet pairing symmetry. At ambient pressure, CeIrSi3 exhibits an antiferromagnetic (AFM) ordering at TN=5 K, and becomes superconducting upon suppressing AFM order by pressure with a superconducting Tc ≈ 1.6 K at a Pc=2.5 GPa. In order to understand the nature of 4f-electrons, hard or easy-axis ordering and their role in the superconductivity in CeIrSi3 a knowledge of its detailed magnetic structure is highly desired. Further, we want to test the position of CeIrSi3 on the Doniach phase whether it orders with hard or an easy axis. We therefore propose to carry out neutron diffraction measurements on CeIrSi3 using the WISH diffractometer.
DOI: 10.5286/isis.e.rb1920142-1
title: Magnetic structure determination of noncentrosymmetric Kondo lattice antiferromagnet CeIrSi3

description: CeIrSi3 belongs to the family of noncentrosymmetric heavy-fermion superconductors, which have attracted significant attention for their distinct unconventional superconducting ground state characterized by mixed spin-singlet and spin-triplet pairing symmetry. At ambient pressure, CeIrSi3 exhibits an antiferromagnetic (AFM) ordering at TN=5 K, and becomes superconducting upon suppressing AFM order by pressure with a superconducting Tc ≈ 1.6 K at a Pc=2.5 GPa. In order to understand the nature of 4f-electrons, hard or easy-axis ordering and their role in the superconductivity in CeIrSi3 a knowledge of its detailed magnetic structure is highly desired. Further, we want to test the position of CeIrSi3 on the Doniach phase whether it orders with hard or an easy axis. We therefore propose to carry out neutron diffraction measurements on CeIrSi3 using the WISH diffractometer.
DOI: 10.5286/isis.e.rb1920191
title: Low-temperature neutron diffraction study of magnetic unconventional clathrate EuNi2P4

description: The proposal is dedicated to the first magnetic unconventional clathrate EuNi2P4. By resolving the low-temperature (below 15K) nuclear and magnetic strucutres we should be able to explain the behavior of EuNi2P4 on a microscopic scale. Magnetic interactions between Eu2+ are expected to be sufficient to drive structural transformations in the flexible clathrate framework.
DOI: 10.5286/isis.e.rb1920248
title: Magnetic order in the frustrated magnet Cu5(VO4)2O2CsCl

description: We propose to use WISH to characterise magnetic order of a new quantum (S=1/2) geometrically frustrated material based on the mineral averievite, Cu_5(VO_4)_2O_2CsCl. This material has a magnetic lattice based on the pyrochlore slab (a kagome lattice sandwiched by two Cu^2+ hexagonal lattices) and undergoes a magnetic transition at 20 K despite strong antiferromagnetic exchange (Th_W = -190 K). We propose to use the high-intensity instrument WISH to observe magnetic scattering below the transition and in the superparamagnetic regime.
DOI: 10.5286/isis.e.rb1920248-1
title: Magnetic order in the frustrated magnet Cu5(VO4)2O2CsCl

description: We propose to use WISH to characterise magnetic order of a new quantum (S=1/2) geometrically frustrated material based on the mineral averievite, Cu_5(VO_4)_2O_2CsCl. This material has a magnetic lattice based on the pyrochlore slab (a kagome lattice sandwiched by two Cu^2+ hexagonal lattices) and undergoes a magnetic transition at 20 K despite strong antiferromagnetic exchange (Th_W = -190 K). We propose to use the high-intensity instrument WISH to observe magnetic scattering below the transition and in the superparamagnetic regime.
DOI: 10.5286/isis.e.rb1920510
title: Magnetism, structural distortion and metal-insulator transition in two novel double perovskite osmate

description: We are interested in a family of double perovskites which have remarkable properties. One member of this family, Pb2CaOsO6, transitions from behaving like a metal to being insulating upon cooling below 80 K. At that same temperature, the Os magnetic moments in Pb2CaOsO6 order antiferromagnetically. We believe the magnetic order induces the metal-insulator transition. We have found that Pb2CaOsO6 is structurally distorted compared to most other double perovskites. This distortion can relieve magnetic frustration and thus allow the moments to order. The sister ocmpound, Pb22ZnOsO6, remains a metal down to 1.5 K and does not order magnetically. In order to understand the behaviour of these two materials we want to use neutron diffraction to determine if Pb22ZnOsO6 is structurally distorted. The experiment will also reveal any short range magnetic correlations at low temperature.