cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2131864.v3
title: phytoplankton NGS raw read data for PeerJ(2016.01)

description: NGS raw read files generated from each sample for the phytoplankton community structure analsysis.MIS: surface water from station I in May 2014 Station I surface water, MIIS: surface water from station II in May 2014, MIID: 50 m water from station 2 in May 2014, JIS: surface water from station I in July 2014, JIIS: surface water from station II in July 2014.
DOI: 10.6084/m9.figshare.2131864.v2
title: PeerJ(rawdata)

description: JIIDR1
DOI: 10.6084/m9.figshare.2951263.v339
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2885308.v339
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2951263.v340
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2117734.v2
title: Assessing Research in Mexico

description: Excel databases Research products SNI Area IV
DOI: 10.6084/m9.figshare.2951263.v341
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2117734.v1
title: Assessing Research in Mexico

description: Excel databases Research products SNI Area IV
DOI: 10.6084/m9.figshare.2885308.v340
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2951263.v342
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2885308.v341
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2951263.v343
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2117041
title: How Robust Are Multirater Interrater Reliability Indices to Changes in Frequency Distribution?

description: Interrater reliability studies are used in a diverse set of fields. Often, these investigations involve three or more raters, and thus, require the use of indices such as Fleiss’s kappa, Conger’s kappa, or Krippendorff’s alpha. Through two motivating examples—one theoretical and one from practice—this article exposes limitations of these indices when the units to be rated are not well-distributed across the rating categories. Then, using a Monte Carlo simulation and information visualizations, we argue for the use of two alternative indices, the Brennan–Prediger coefficient and Gwet’s AC2, because the agreement levels reported by these indices are more robust to variation in the distribution of units that raters encounter. The article concludes by exploring the complex, interwoven relationship between the number of levels in a rating instrument, the agreement level present among raters, and the distribution of units that are to be scored. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.2117041.v2
title: How Robust Are Multirater Interrater Reliability Indices to Changes in Frequency Distribution?

description: Interrater reliability studies are used in a diverse set of fields. Often, these investigations involve three or more raters, and thus, require the use of indices such as Fleiss’s kappa, Conger’s kappa, or Krippendorff’s alpha. Through two motivating examples—one theoretical and one from practice—this article exposes limitations of these indices when the units to be rated are not well-distributed across the rating categories. Then, using a Monte Carlo simulation and information visualizations, we argue for the use of two alternative indices, the Brennan–Prediger coefficient and Gwet’s AC2, because the agreement levels reported by these indices are more robust to variation in the distribution of units that raters encounter. The article concludes by exploring the complex, interwoven relationship between the number of levels in a rating instrument, the agreement level present among raters, and the distribution of units that are to be scored. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.2885308.v342
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2117041.v1
title: How Robust Are Multi-Rater Inter-Rater Reliability Indices to Changes in Frequency Distribution?

description: Inter-rater reliability studies are used in a diverse set of fields. Often, these investigations involve three or more raters, and thus, require the use of indices such as Fleiss’s kappa, Conger’s kappa, or Krippendorff’s alpha. Through two motivating examples – one theoretical and one from practice – this paper exposes limitations of these indices when the units to be rated are not well-distributed across the rating categories. Then, using a Monte Carlo simulation and information visualizations, we argue for the use of two alternative indices, the Brennan-Prediger coefficient and Gwet’s AC2, because the agreement levels reported by these indices are more robust to variation in the distribution of units that raters encounter. The paper concludes by exploring the complex, interwoven relationship between the number of levels in a rating instrument, the agreement level present among raters, and the distribution of units that are to be scored.
DOI: 10.6084/m9.figshare.2951263.v344
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2116897
title: The effect of rapamycin on biodiesel-producing protist <i>Euglena gracilis</i>

description: Rapamycin induces autophagy with lipid remodeling in yeast and mammalian cells. To investigate the lipid biosynthesis of <i>Euglena gracilis</i>, rapamycin was supplemented in comparison with two model algae, <i>Chlamydomonas reinhardtii</i> and <i>Cyanidioschyzon merolae</i>. In <i>Euglena</i>, rapamycin induced the reduction of chlorophylls and the accumulation of neutral lipids without deterring its cell proliferation. Its lipidomic profile revealed that the fatty acid composition did not alter by supplementing rapamycin. In <i>Chlamydomonas</i>, however, rapamycin induced serious growth inhibition as reported elsewhere. With a lower concentration of rapamycin, the alga accumulated neutral lipids without reducing chlorophylls. In <i>Cyanidioschyzon</i>, rapamycin did not increase neutral lipids but reduced its chlorophyll content. We also tested fatty acid elongase inhibitors such as pyroxasulfone or flufenacet in <i>Euglena</i> with no significant change in its neutral lipid contents. In summary, controlled supplementation of rapamycin can increase the yield of neutral lipids while the scheme is not always applicable for other algal species. Lipid profile of <i>Euglena gracilis</i> under supplementation of rapamycin. With &lt;10 µM rapamycin, the neutral lipid contents increase without deterring cell growth.
DOI: 10.6084/m9.figshare.2116525
title: Zika glycoprotein E complete protein from Swiss Model

description: This is the complete model that was derived from homology modeling against the Dengue virus glycoprotein E in Swiss Model.<br>
DOI: 10.6084/m9.figshare.2116888
title: Natural variation in the glucose content of dilute sulfuric acid–pretreated rice straw liquid hydrolysates: implications for bioethanol production

description: Rice straw is a promising resource for bioethanol production. Because the glucose content of pretreatment liquid hydrolysates is highly correlated with ethanol yield, the selection of appropriate rice cultivars is essential. The glucose content in liquid hydrolysates of pretreated rice straws of 208 diverse cultivars was evaluated in natural field in 2013 and 2014 using a novel high-throughput system. The glucose content of the rice straw samples varied across cultivars and was affected by environmental factors such as temperature and solar radiation. Several high-quality cultivars exhibiting high glucose content in both years were identified. The results of this study can aid in development of novel rice cultivars suitable as both feedstocks for bioethanol production and cooking. The rice straw glucose content after pretreatment varied by cultivar. Thus selecting suitable cultivars is crucial for efficient ethanol production.
DOI: 10.6084/m9.figshare.2116897.v1
title: The effect of rapamycin on biodiesel-producing protist <i>Euglena gracilis</i>

description: Rapamycin induces autophagy with lipid remodeling in yeast and mammalian cells. To investigate the lipid biosynthesis of <i>Euglena gracilis</i>, rapamycin was supplemented in comparison with two model algae, <i>Chlamydomonas reinhardtii</i> and <i>Cyanidioschyzon merolae</i>. In <i>Euglena</i>, rapamycin induced the reduction of chlorophylls and the accumulation of neutral lipids without deterring its cell proliferation. Its lipidomic profile revealed that the fatty acid composition did not alter by supplementing rapamycin. In <i>Chlamydomonas</i>, however, rapamycin induced serious growth inhibition as reported elsewhere. With a lower concentration of rapamycin, the alga accumulated neutral lipids without reducing chlorophylls. In <i>Cyanidioschyzon</i>, rapamycin did not increase neutral lipids but reduced its chlorophyll content. We also tested fatty acid elongase inhibitors such as pyroxasulfone or flufenacet in <i>Euglena</i> with no significant change in its neutral lipid contents. In summary, controlled supplementation of rapamycin can increase the yield of neutral lipids while the scheme is not always applicable for other algal species. Lipid profile of <i>Euglena gracilis</i> under supplementation of rapamycin. With &lt;10 µM rapamycin, the neutral lipid contents increase without deterring cell growth.
DOI: 10.6084/m9.figshare.2885308.v343
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2116888.v1
title: Natural variation in the glucose content of dilute sulfuric acid–pretreated rice straw liquid hydrolysates: implications for bioethanol production

description: Rice straw is a promising resource for bioethanol production. Because the glucose content of pretreatment liquid hydrolysates is highly correlated with ethanol yield, the selection of appropriate rice cultivars is essential. The glucose content in liquid hydrolysates of pretreated rice straws of 208 diverse cultivars was evaluated in natural field in 2013 and 2014 using a novel high-throughput system. The glucose content of the rice straw samples varied across cultivars and was affected by environmental factors such as temperature and solar radiation. Several high-quality cultivars exhibiting high glucose content in both years were identified. The results of this study can aid in development of novel rice cultivars suitable as both feedstocks for bioethanol production and cooking. The rice straw glucose content after pretreatment varied by cultivar. Thus selecting suitable cultivars is crucial for efficient ethanol production.
DOI: 10.6084/m9.figshare.2116372
title: Ferrocene clicked polypyrrole derivatives: effect of spacer group on electrochemical properties and post-polymerization functionalization

description: In this study, novel ferrocene-functionalized N-alkyl substituted pyrrole derivatives, namely 4-ferrocenyl-1-[3-(pyrrol-1-yl)propyl]-1<i>H</i>-1,2,3-triazole (Py3Fc), 4-ferrocenyl-1-[4-(pyrrol-1-yl)butyl]-1<i>H</i>-1,2,3-triazole (Py4Fc), and 4-ferrocenyl-1-[6-(pyrrol-1-yl)hexyl]-1<i>H</i>-1,2,3-triazole (Py6Fc), were synthesized via click reaction and the monomers were characterized by <sup>1</sup>H NMR, <sup>13</sup>C NMR, FTIR, and HRMS techniques. Redox properties of the monomers were investigated by cyclic voltammetry (CV) studies. Contrary to general literature, both Py4Fc and Py6Fc were electrochemically polymerized without loss in redox activity of ferrocene group. Moreover, click chemistry was utilized in post-polymerization functionalization. For this purpose, three azide-containing polypyrroles, P(Py3N<sub>3</sub>), P(Py4N<sub>3</sub>), and P(Py6N<sub>3</sub>) were electrochemically synthesized and subjected to click reaction in the presence of ethynylferrocene. CV studies of the post-polymerization functionalized polymers revealed quasi-reversible waves, while only P(Py6-post-Fc) showed the characteristic redox behavior of both polypyrrole and ferrocene. Thus, in this study preparation of a conducting homopolymers of pyrrole having covalently bonded ferrocene units was demonstrated and effect of spacer group is investigated.
DOI: 10.6084/m9.figshare.2885308.v344
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2116372.v1
title: Ferrocene clicked polypyrrole derivatives: effect of spacer group on electrochemical properties and post-polymerization functionalization

description: In this study, novel ferrocene-functionalized N-alkyl substituted pyrrole derivatives, namely 4-ferrocenyl-1-[3-(pyrrol-1-yl)propyl]-1<i>H</i>-1,2,3-triazole (Py3Fc), 4-ferrocenyl-1-[4-(pyrrol-1-yl)butyl]-1<i>H</i>-1,2,3-triazole (Py4Fc), and 4-ferrocenyl-1-[6-(pyrrol-1-yl)hexyl]-1<i>H</i>-1,2,3-triazole (Py6Fc), were synthesized via click reaction and the monomers were characterized by <sup>1</sup>H NMR, <sup>13</sup>C NMR, FTIR, and HRMS techniques. Redox properties of the monomers were investigated by cyclic voltammetry (CV) studies. Contrary to general literature, both Py4Fc and Py6Fc were electrochemically polymerized without loss in redox activity of ferrocene group. Moreover, click chemistry was utilized in post-polymerization functionalization. For this purpose, three azide-containing polypyrroles, P(Py3N<sub>3</sub>), P(Py4N<sub>3</sub>), and P(Py6N<sub>3</sub>) were electrochemically synthesized and subjected to click reaction in the presence of ethynylferrocene. CV studies of the post-polymerization functionalized polymers revealed quasi-reversible waves, while only P(Py6-post-Fc) showed the characteristic redox behavior of both polypyrrole and ferrocene. Thus, in this study preparation of a conducting homopolymers of pyrrole having covalently bonded ferrocene units was demonstrated and effect of spacer group is investigated.
DOI: 10.6084/m9.figshare.2951263.v345
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2885308.v345
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2951263.v346
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2885308.v346
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2951263.v347
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2885308.v347
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2951263.v348
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2885308.v348
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2114344
title: H and E vs. sintering temperature

description: <br>Inkjet Printing and Nanoindentation of Porous Alumina Multilayers data
DOI: 10.6084/m9.figshare.2951263
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2114344.v1
title: H and E vs. sintering temperature

description: <br>Inkjet Printing and Nanoindentation of Porous Alumina Multilayers data
DOI: 10.6084/m9.figshare.2114305
title: Spherical Indentation of Porous Ceramics: Cracking and Toughness

description: raw data<br>
DOI: 10.6084/m9.figshare.2114305.v1
title: Spherical Indentation of Porous Ceramics: Cracking and Toughness

description: raw data<br>
DOI: 10.6084/m9.figshare.2885308.v349
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2951263.v351
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2114206
title: upload_SchmidtPester.zip

description: Data associated to the manuscript "A Multivariate Granger Causality Concept Towards Full Brain Functional Connectivity" submitted to PLOSONE.<br>
DOI: 10.6084/m9.figshare.2114191
title: Partially occluded figures

description: This dataset presents 33 partially occluded shapes (001-010, 011-017, 100-113), and possible completions (denoted with letters a-e). It is intended for testing model of vision in how well they agree with human judgments of shape completion.<br>Correct responses are provided in corr_resps.csv file. Note that "correct" is somewhat subjective. It is better to think of some completions being more likely than others, and ask for models to provide probabilities of these completions.<br>Shapes 012-017 are based on van Lier, Leeuwenberg, & van der Helm (Perception, 1995, doi: 10.1068/p240727).
DOI: 10.6084/m9.figshare.2114206.v1
title: upload_SchmidtPester.zip

description: Data associated to the manuscript "A Multivariate Granger Causality Concept Towards Full Brain Functional Connectivity" submitted to PLOSONE.<br>
DOI: 10.6084/m9.figshare.2885308.v350
title: UNH-RVAT 3-D SST RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions using the k-omega SST RANS model in OpenFOAM 2.3.x (590d57f32fed). See the link below for case files and download instructions.
DOI: 10.6084/m9.figshare.2115400.v3
title: Information and energy.pdf

description: <br><b>Information and Energy</b> By Hartmut Ising A photon in a double slit experiment is carrying 1 bit of information. This was demonstrated in a gedankenexperiment by Brukner and Zeilinger. Here it is shown in a modified gedankenexperiment that Planck’s formula for the photon energy can be interpreted as the energy which is equivalent to the flux of information 1 bit/Δt and that Δt is equal to the photon’s period: E = h ν = h (1 bit) c/λ. This result is valid for an isolated photon. Based upon this result an information-energy-hypothesis is introduced for complex information. Experimental tests of the hypothetical equivalence between energy and information flux are suggested. Experimentalists with the necessary equipment are encouraged to perform such experiments as here described. This empirical approach is considered necessary as a first step on the way which could lead – if confirmed – to a quantitative theory of information physics and to experimental evidence of dark energy.