cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3158815
title: Smells like Teen Spirit: Improving Bug Prediction Performance Using the Intensity of Code Smells

description: Code smells are symptoms of poor design and implementation choices. Previous studies empirically assessed the impact of smells on code quality and clearly indicate their negative impact on maintainability, including a higher bug- proneness of components affected by code smells. In this paper we capture previous findings on bug-proneness to build a specialized bug prediction model for smelly classes. Specifically, we evaluate the contribution of a measure of intensity of code smells (i.e., a measure that captures the severity of the smell), by adding it to a structural metric-based bug prediction models and comparing the results of the new model against the baseline model. Results indicate that the accuracy of a bug prediction model increases by adding the intensity of smells as predictor. Moreover, we complement this analysis by evaluating the actual gain provided by the intensity metric with respect to the other structural metrics in the model, including the ones used to compute the measure of intensity. We observe that the intensity index results much more important with respect to other metrics used for predicting the buggyness of smelly classes. Finally, we report additional analysis aimed at showing (i) to what extent false positive smell instances detected by an automatic smell detection tool impact the performance and (ii) the contribution of the intensity index in prediction models relying on process metrics or a combination of structural and process metrics.
DOI: 10.6084/m9.figshare.3158827.v1
title: Micromeasure Data.zip

description: Micromeasure data
DOI: 10.6084/m9.figshare.3159094.v1
title: New draft item

description: 3D models of the TBSV replication platform as visualized by METTEM and ET
DOI: 10.6084/m9.figshare.3156700
title: Practical adaptive quantum tomography: Supplementary material

description: This Supplementary Material includes the source code used to simulate our hybrid quantum state tomography data with high-performance computing (HPC) resources, as well as the simulated data and post-processing code. Please see README.md for more details.
DOI: 10.6084/m9.figshare.3156604
title: Final_Data_Fig6

description: Fig6. Scatter plots of signals obtained from endogenous biomolecules are quantified using data from individual rats.
DOI: 10.6084/m9.figshare.3156607
title: Final_Data_Fig7

description: Fig7. Scatter plots of the <i>in vivo</i> and <i>in vitro</i> signals quantified from individual rats.
DOI: 10.6084/m9.figshare.3156601
title: Final_Data_Fig5

description: Fig5. Endogenous biomolecule signals in the right dorsal hippocampal region of control and SSP rats, as quantified using LC-MS/MS.
DOI: 10.6084/m9.figshare.3156700.v1
title: Hybridizing self-guided quantum tomography with Bayesian and frequentist methods: Supplementary material

description: This Supplementary Material includes the source code used to simulate our hybrid quantum state tomography data with high-performance computing (HPC) resources, as well as the simulated data and post-processing code. Please see README.md for more details.
DOI: 10.6084/m9.figshare.3156607.v1
title: Final_Data_Fig7

description: Fig7. Scatter plots of the <i>in vivo</i> and <i>in vitro</i> signals quantified from individual rats.
DOI: 10.6084/m9.figshare.3156598
title: Final_Data_Fig4

description: Fig4. Bar graph illustrating the Gln/Glu, Glu/tCr, Gln/tCr, GABA/Glu, and tNAA/tCr ratios in the right dorsal hippocampal region of control and SSP rats.
DOI: 10.6084/m9.figshare.3156604.v1
title: Final_Data_Fig6

description: Fig6. Scatter plots of signals obtained from endogenous biomolecules are quantified using data from individual rats.
DOI: 10.6084/m9.figshare.3156607.v3
title: Final_Data_Fig7

description: Fig7. Scatter plots of the <i>in vivo</i> and <i>in vitro</i> signals quantified from individual rats.
DOI: 10.6084/m9.figshare.3156601.v1
title: Final_Data_Fig5

description: Fig5. Endogenous biomolecule signals in the right dorsal hippocampal region of control and SSP rats, as quantified using LC-MS/MS.
DOI: 10.6084/m9.figshare.3156604.v3
title: Final_Data_Fig6

description: Fig6. Scatter plots of signals obtained from endogenous biomolecules are quantified using data from individual rats.
DOI: 10.6084/m9.figshare.3156601.v3
title: Final_Data_Fig5

description: Fig5. Endogenous biomolecule signals in the right dorsal hippocampal region of control and SSP rats, as quantified using LC-MS/MS.
DOI: 10.6084/m9.figshare.3156595
title: Final_Data_Fig3

description: Fig3. Cerebral metabolite signals in the right dorsal hippocampal region of control and SSP rats, quantified from the LCModel fitted spectra.
DOI: 10.6084/m9.figshare.3156598.v1
title: Final_Data_Fig4

description: Fig4. Bar graph illustrating the Gln/Glu, Glu/tCr, Gln/tCr, GABA/Glu, and tNAA/tCr ratios in the right dorsal hippocampal region of control and SSP rats.
DOI: 10.6084/m9.figshare.3156598.v2
title: Final_Data_Fig4

description: Fig4. Bar graph illustrating the Gln/Glu, Glu/tCr, Gln/tCr, GABA/Glu, and tNAA/tCr ratios in the right dorsal hippocampal region of control and SSP rats.
DOI: 10.6084/m9.figshare.3156598.v4
title: Final_Data_Fig4

description: Fig4. Bar graph illustrating the Gln/Glu, Glu/tCr, Gln/tCr, GABA/Glu, and tNAA/tCr ratios in the right dorsal hippocampal region of control and SSP rats.
DOI: 10.6084/m9.figshare.3156595.v1
title: PONE_Final_Data_Fig3.xlsx

description: Fig3. Cerebral metabolite signals in the right dorsal hippocampal region of control and SSP rats, quantified from the LCModel fitted spectra.
DOI: 10.6084/m9.figshare.3156550
title: scripts for analysis

description: R scripts to reproduce our analysis
DOI: 10.6084/m9.figshare.3156595.v3
title: Final_Data_Fig3

description: Fig3. Cerebral metabolite signals in the right dorsal hippocampal region of control and SSP rats, quantified from the LCModel fitted spectra.
DOI: 10.6084/m9.figshare.3156550.v1
title: scripts for analysis

description: R scripts to reproduce our analysis
DOI: 10.6084/m9.figshare.3156532
title: csv files

description: the comma separated value file, including raw data and formatted data to run the models
DOI: 10.6084/m9.figshare.3156541
title: .Rdata files

description: .Rdata files of model objects and data sets for use in reproducing our R analysis
DOI: 10.6084/m9.figshare.3156595.v2
title: Final_Data_Fig3

description: Fig3. Cerebral metabolite signals in the right dorsal hippocampal region of control and SSP rats, quantified from the LCModel fitted spectra.
DOI: 10.6084/m9.figshare.3156217
title: Data.xlsx

description: These data represent multiple different nitrogen cycling processes (denitrification, nitrification, dissimilatory nitrate reduction to ammonium) and oxygen consumption in 12 tropical coastal lagoon sediments and processes that may drive nitrogen cycling. The data here were collected in ecosystems with low nitrate concentrations.
DOI: 10.6084/m9.figshare.3156418
title: Simulation of freely-diffusing smFRET measurements

description: Simulation of a static mixture of two FRET populations generated with PyBroMo.
DOI: 10.6084/m9.figshare.3156217.v1
title: Data.xlsx

description: These data represent multiple different nitrogen cycling processes (denitrification, nitrification, dissimilatory nitrate reduction to ammonium) and oxygen consumption in 12 tropical coastal lagoon sediments and processes that may drive nitrogen cycling. The data here were collected in ecosystems with low nitrate concentrations.
DOI: 10.6084/m9.figshare.3156211
title: Citation and access data, and journal impact factors for co-published EQUATOR reporting guidelines

description: This is the full citation details and DOIs for 85 co-published reporting guidelines, together with the citation counts, number of article accesses and journal impact factor for each article and journal. This represents a total of nine research reporting statements, published across 58 journals in biomedicine.<br><br><br>
DOI: 10.6084/m9.figshare.3156214
title: Cell-mediated drug delivery by gingival interdental papilla mesenchymal stromal cells (GinPa-MSCs) loaded with paclitaxel

description: <b>Objective</b>: Gingival tissue is composed of cell types that contribute to the body’s defense against many agents in oral environment, wound healing and tissue regeneration. Thanks to their easy and scarcely invasive withdrawal procedure, interdental papilla provide a good source of mesenchymal stromal cells (GinPa-MSCs). We isolated GinPa-MSCs and verified their ability to uptake/release the anticancer agent Paclitaxel (PTX). <b>Methods</b>: <i>In vitro</i> expanded GinPa-MSCs were characterized for CD markers by FACS, tested for differentiation ability and analyzed by TEM. Their ability to uptake/release PTX was assessed according to a standardized procedure. <b>Results</b>: The CD expression and chondro-adipo-osteo differentiation ability confirmed the mesenchymal feature of GinPa-MSCs. Surprisingly, 28% of GinPa-MSCs expressed CD14 marker and had an impressive pinocytotic activity. GinPa-MSCs were able to take up and release a sufficient amount of PTX to demonstrate effective <i>in vitro</i> activity against pancreatic carcinoma cells, suggesting that the drug was not inactivated. <b>Conclusions</b>: The procedure to obtain MSCs from interdental papilla is less invasive than that used for both bone marrow and adipose tissue, GinPa-MSCs are easy to expand and can be efficiently loaded with PTX. Taken together these qualities suggest that GinPa-MSCs may prove to be a good tool for cell-mediated drug delivery in cancer, particularly if related to stomatognathic system.
DOI: 10.6084/m9.figshare.3156214.v1
title: Cell-mediated drug delivery by gingival interdental papilla mesenchymal stromal cells (GinPa-MSCs) loaded with paclitaxel

description: <b>Objective</b>: Gingival tissue is composed of cell types that contribute to the body’s defense against many agents in oral environment, wound healing and tissue regeneration. Thanks to their easy and scarcely invasive withdrawal procedure, interdental papilla provide a good source of mesenchymal stromal cells (GinPa-MSCs). We isolated GinPa-MSCs and verified their ability to uptake/release the anticancer agent Paclitaxel (PTX). <b>Methods</b>: <i>In vitro</i> expanded GinPa-MSCs were characterized for CD markers by FACS, tested for differentiation ability and analyzed by TEM. Their ability to uptake/release PTX was assessed according to a standardized procedure. <b>Results</b>: The CD expression and chondro-adipo-osteo differentiation ability confirmed the mesenchymal feature of GinPa-MSCs. Surprisingly, 28% of GinPa-MSCs expressed CD14 marker and had an impressive pinocytotic activity. GinPa-MSCs were able to take up and release a sufficient amount of PTX to demonstrate effective <i>in vitro</i> activity against pancreatic carcinoma cells, suggesting that the drug was not inactivated. <b>Conclusions</b>: The procedure to obtain MSCs from interdental papilla is less invasive than that used for both bone marrow and adipose tissue, GinPa-MSCs are easy to expand and can be efficiently loaded with PTX. Taken together these qualities suggest that GinPa-MSCs may prove to be a good tool for cell-mediated drug delivery in cancer, particularly if related to stomatognathic system.
DOI: 10.18462/iir.rankine.2020.1143
title: Gradient based design optimization of a radial inflow turbine.
DOI: 10.6084/m9.figshare.3156211.v1
title: Citation and access data, and journal impact factors for co-published EQUATOR reporting guidelines

description: This is the full citation details and DOIs for 85 co-published reporting guidelines, together with the citation counts, number of article accesses and journal impact factor for each article and journal. This represents a total of nine research reporting statements, published across 58 journals in biomedicine.<br><br><br>
DOI: 10.6084/m9.figshare.3156154
title: Database.xlsx

description: This database includes data on 10 000 employees working for 3 different companies. their responses to a 58-item questionnaire on psychosocial factors and to to a 25-item questionnaire on stress are included<br>
DOI: 10.6084/m9.figshare.3156100
title: Regression Adjustment for Noncrossing Bayesian Quantile Regression

description: A two-stage approach is proposed to overcome the problem in quantile regression, where separately fitted curves for several quantiles may cross. The standard Bayesian quantile regression model is applied in the first stage, followed by a Gaussian process regression adjustment, which monotonizes the quantile function while borrowing strength from nearby quantiles. The two-stage approach is computationally efficient, and more general than existing techniques. The method is shown to be competitive with alternative approaches via its performance in simulated examples. Supplementary materials for the article are available online.
DOI: 10.6084/m9.figshare.3156100.v1
title: Regression Adjustment for Noncrossing Bayesian Quantile Regression

description: A two-stage approach is proposed to overcome the problem in quantile regression, where separately fitted curves for several quantiles may cross. The standard Bayesian quantile regression model is applied in the first stage, followed by a Gaussian process regression adjustment, which monotonizes the quantile function while borrowing strength from nearby quantiles. The two-stage approach is computationally efficient, and more general than existing techniques. The method is shown to be competitive with alternative approaches via its performance in simulated examples. Supplementary materials for the article are available online.
DOI: 10.6084/m9.figshare.3156082
title: Freesound1010 files used to train rain noise detector (database 1)

description: This data is a list of a subset of files used from the freefield 1010 database, to train an acoustics rainfall detection algorithm. freefield 1010 database is available here <br>
DOI: 10.6084/m9.figshare.3156079
title: XML files for rainfall sounds downloaded from the British library (database 2) - metadata

description: This is a collection of xml files describing the files used to train a rain fall noise detection algorithm. The xml files were downloaded from the british library. You can use the data within the file to identify which file the xml refers to (title, Id, description etc). To access the files you need to login via your institution: https://sounds.bl.uk/
DOI: 10.6084/m9.figshare.3156076
title: Weather history over for 2 24 hour periods at the Mersey gateway (corresponds to 2 24 hour audio recordings in this folder) - 2014/08/ 10th and 13th

description: Weather data for 2014 08 10th and 13th collected from wunderground.com from a nearby weather station, located at 53°22'33.6"N 2°42'36.0"W, was accessed via the wunderground.com website; the weather station ID was ‘ICHESHIR27’ and was 2km from the first position and 3km from the second.
DOI: 10.6084/m9.figshare.3156076.v1
title: Weather history over for 2 24 hour periods at the Mersey gateway (corresponds to 2 24 hour audio recordings in this folder) - 2014/08/ 10th and 13th

description: Weather data for 2014 08 10th and 13th collected from wunderground.com from a nearby weather station, located at 53°22'33.6"N 2°42'36.0"W, was accessed via the wunderground.com website; the weather station ID was ‘ICHESHIR27’ and was 2km from the first position and 3km from the second.
DOI: 10.6084/m9.figshare.3156079.v1
title: XML files for rainfall sounds downloaded from the British library (database 2) - metadata

description: This is a collection of xml files describing the files used to train a rain fall noise detection algorithm. The xml files were downloaded from the british library. You can use the data within the file to identify which file the xml refers to (title, Id, description etc). To access the files you need to login via your institution: https://sounds.bl.uk/
DOI: 10.6084/m9.figshare.3156055
title: Recordings at mersey gateway - 24 hours with rainfall

description: recordings from two locations at the mersey gate way during construction phase. recording using song meter SM3 devices. Point 1 - On the 10<sup>th</sup> August 2014 the SM3 was located on the northern shore of the river in a salt marsh at Latitude and Longitude: 53°21'26.64" N and 2°42'48.96" W Point 2 - On the 14<sup>th</sup> August 2014 the SM3 was located on the northern shore of the river in a salt marsh at Latitude and Longitude: 53°21'26.64" N and 2°42'48.96" W. On the 13<sup>th</sup> August it was located within a wood on Wigg Island at 53°20'54.41"N 2°42'10.08"W. Historic weather data from a nearby weather station, located at 53°22'33.6"N 2°42'36.0"W, was accessed via the wunderground.com website; the weather station ID was ‘ICHESHIR27’ and was 2km from the first position and 3km from the second.
DOI: 10.6084/m9.figshare.3156067
title: Oversize network

description: The zip file contains three networks (adjacency matrices -- binary unweighted -- in CSV format) describing the criminal organization targeted by operation Oversize (2000-2009), an Italian criminal case against a mafia group.netWR.csv: Wiretap RecordsnetAW.csv: Arrest WarrantnetJU.csv: Judgement<br><br>
DOI: 10.6084/m9.figshare.3156055.v1
title: Recordings at mersey gateway - 24 hours with rainfall

description: recordings from two locations at the mersey gate way during construction phase. recording using song meter SM3 devices. Point 1 - On the 10<sup>th</sup> August 2014 the SM3 was located on the northern shore of the river in a salt marsh at Latitude and Longitude: 53°21'26.64" N and 2°42'48.96" W Point 2 - On the 14<sup>th</sup> August 2014 the SM3 was located on the northern shore of the river in a salt marsh at Latitude and Longitude: 53°21'26.64" N and 2°42'48.96" W. On the 13<sup>th</sup> August it was located within a wood on Wigg Island at 53°20'54.41"N 2°42'10.08"W. Historic weather data from a nearby weather station, located at 53°22'33.6"N 2°42'36.0"W, was accessed via the wunderground.com website; the weather station ID was ‘ICHESHIR27’ and was 2km from the first position and 3km from the second.
DOI: 10.6084/m9.figshare.3155911
title: Data_Näslund_facets-2015-0015.csv

description: This dataset contains data used for the article:<br>Näslund, Pettersson & Johnsson<br>Behavioural reactions of three-spined sticklebacks to simulated risk of predation – effects of predator distance and movement<br>Facets, doi:10.1139/facets-2015-0015<br><br>The readme.txt file describe the data.<br><br>
DOI: 10.6084/m9.figshare.3155911.v1
title: Data_Näslund_facets-2015-0015.csv

description: This dataset contains data used for the article:<br>Näslund, Pettersson & Johnsson<br>Behavioural reactions of three-spined sticklebacks to simulated risk of predation – effects of predator distance and movement<br>Facets, doi:10.1139/facets-2015-0015<br><br>The readme.txt file describe the data.<br><br>
DOI: 10.18462/iir.rankine.2020.1137
title: Working fluid screening for ocean thermal energy conversion (OTEC) applications.
DOI: 10.6084/m9.figshare.3154240
title: Benchmark instances for the personal planning problem

description: The instances are based on real-world information gathered in the course of a research project by the analysis of 259 online interviews and two focus groups each with 10 participants. This results in six instance groups (A to F) representing different types of schedule patterns. For each group five instances are generated. <br><br>A set of small instances is generated which has a planning horizon of 3 days (3DayInstances.zip) and a set of large instance with a planning horizon of a week is generated (WeeklyInstances.zip).<br><br>The detailed description of the content and format is given in each file.<br>
DOI: 10.6084/m9.figshare.3155881
title: Raw data - Markov chain model

description: The file contains the raw data for the manuscript entitled:"A Markov chain model for changes in users' assessment of search results" submitted to PLoS One.The paper is authored by Maayan Zhitomirsky-Geffet, Judit Bar-Ilan, Mark Levene
DOI: 10.6084/m9.figshare.3154240.v1
title: PPP Instances

description: The instances are based on real-world information gathered in the course of a research project by the analysis of 259 online interviews and two focus groups each with 10 participants. This results in six instance groups (A to F) representing different types of schedule patterns. For each group five instances are generated. <br><br>A set of small instances is generated which has a planning horizon of 3 days (3DayInstances.zip) and a set of large instance with a planning horizon of a week is generated (WeeklyInstances.zip).<br><br>The detailed description of the content and format is given in each file.<br>
DOI: 10.6084/m9.figshare.3154051
title: Data for PLOS paper.xls

description: Crop raiding by wild herbivores close to an area of protected wildlife is a serious problem that can potentially undermine conservation efforts. Since there is orders of magnitude difference between farmers’ perception of damage and the compensation given by the government, an objective and realistic estimate of damage was found essential. We employed four different approaches to estimate the extent of and patterns in crop damage by wild herbivores along the western boundary of Tadoba-Andhari Tiger Reserve in the state of Maharashtra, central India. These approaches highlight different aspects of the problem but converge on an estimated damage of over 50% for the fields adjacent to the forest, gradually reducing in intensity with distance. We found that the visual damage assessment method currently employed by the government for paying compensation to farmers was uncorrelated to and grossly underestimated actual damage. The findings necessitate a radical rethinking of policies to assess, mitigate as well as compensate for crop damage caused by protected wildlife species.
DOI: 10.6084/m9.figshare.3154015
title: Land Use Scenarios for Central Germany until 2050

description: Dear users,<br>this dataset contains the 500m base grid for Central Germany as an ARCGIS shapefile in which all pixels have a uniqui ID.<br>Please use this ID to link the spatial data (=grid) to the scenario tables, which are provided in the data files in csv format. Please read the read_mes provided with the data files for more details on the spatial scenario datasets.<br><br>Scenarios have been calculated with the SITE model using among other inputs 3 other figshare dadatsets:<br><br>Spatial data Central Germany: https://figshare.com/articles/Central_Germany_GIS_dataset/1318765 <br>Metadata to spatial data: https://figshare.com/articles/Centra_Germany_Dataset_Metadata/1319479<br>Population scenarios: https://figshare.com/articles/Population_scenarios_for_Central_Germany/3082183<br>Population scenarios Spatial Data: https://figshare.com/articles/Population_scenarios_for_Central_Germany_Spatial_datasets/3153967<br><br>The four Scenarios are described in Priess and Hauck (2014), a detailed brochure is available in German at: http://www.ufz.de/index.php?en=37513 <br><br><br>Any questions welcome: joerg.priess@ufz.de <br>(or the authors of the other datasets)<br><br><br>Central Germany Scenario-related Refs:<br><br>Priess, J. A. and J. Hauck. 2014. Integrative Scenario Development. Ecology and Society 19 (1): 12. [online] URL: http://www.ecologyandsociety.org/vol19/iss1/art12/ <br><br>Hauck, J. and Priess J.A. (2013). „The most likely future isn’t“: Landnutzungsszenarien für Mitteldeutschland. Raumforschung und Raumordnung. DOI: 10.1007/s13147-013-0248-5<br><br>
DOI: 10.6084/m9.figshare.3153997
title: Data Friendships paper

description: See code for description