cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15161/oar.it/73864
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.14811648.v1
title: The number of expected targets modulates access to working memory: a new unified account of lag-1 sparing and distractor intrusions - data from 3 experiments

description: The two files reflect the full behavioural results from 3 experiments and main ERP results from one experiment. Each sheet reflects one experiment.<br>The ERP recording information was as follows:<br>A 500-Hz sampling rate with a 40 Hz low-pass filter was applied. Channels were referenced online to a left-earlobe electrode, and re-referenced offline to an average of both earlobes. Trials with eye blinks (exceeding ±60 µV at Fpz), horizontal eye movements (exceeding ±40 µV in the HEOG channels), and muscle movement artifacts (exceeding ±80 µV at all other channels) were removed as artifacts. In one analysis (Expect 1 versus Expect 2 trials) EEG was segmented into epochs from from 100 ms before to 800 ms after the onset of the target frame, relative to a 100 ms pre-stimulus baseline. In a second analysis (target 1st versus intrusion 1st) EEG was segmented into epochs from from 100 ms before to 500 ms after the onset of the target frame, relative to a 100 ms pre-stimulus baseline. The ERP results file average LRP difference wave (contralateral minus ipsilateral) at PO7 and PO8 electrodes. Averaged ERP waveforms were computed for trials with a target in the left or right RSVP stream, and LRPs triggered by the target frame were computed by comparing ERPs at electrodes PO7/PO8 contralateral and ipsilateral to the location of the target.<br>Each column reflects the average results of a single participant, as a function of the relevant condition. In the first sheet: Expect 1 vs. Expect 2. In the second sheet: response on the first response (T1 first vs. Post-T1 first) and number of targets (1 target vs. 2 targets). For both cases, two additional sheets are included with an application of an additional 10 hz low-pass filter to segments, for purposes of a latency analysis.
DOI: 10.5281/zenodo.4767189
title: Data to support the publication The use of Twitter for knowledge exchange on sustainable soil management

description: Twitter analysis of followers of SoilCare Twitter account 5 farmer semi-structured interviews
DOI: 10.5281/zenodo.4767188
title: Data to support the publication The use of Twitter for knowledge exchange on sustainable soil management

description: Twitter analysis of followers of SoilCare Twitter account 5 farmer semi-structured interviews
DOI: 10.6084/m9.figshare.14814882
title: Covid-19 vaccine hesitancy-Pakistan.sav

description: Covid-19 Vaccine hesitancy data collected from Pakistan. Data comprises responses about vaccine confidence, vaccine knowledge, vaccine convenience, vaccine complacency.
DOI: 10.5519/qd.2xndfd7e
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (800 records)
DOI: 10.5281/zenodo.5005587
title: Multiple sequence alignments of sensor histidine kinases and response regulators

description: The two FASTA files contain multiple sequence alignments of sensor histidine kinase and response regulator sequences. The source sequences were obtained by BLAST, clustered with usearch and aligned with muscle. More details to be found in Multamäki et al. 2021.
DOI: 10.5281/zenodo.5005586
title: Multiple sequence alignments of sensor histidine kinases and response regulators

description: The two FASTA files contain multiple sequence alignments of sensor histidine kinase and response regulator sequences. The source sequences were obtained by BLAST, clustered with usearch and aligned with muscle. More details to be found in Multamäki et al. 2021.
DOI: 10.5281/zenodo.4727934
title: CI/CD Pipelines Evolution and Restructuring: A Qualitative and Quantitative Study - Dataset and scripts

description: This repository contains datasets and scripts for the paper: CI/CD Pipelines Evolution and Restructuring: A Qualitative and Quantitative Study
DOI: 10.5281/zenodo.4727933
title: CI/CD Pipelines Evolution and Restructuring: A Qualitative and Quantitative Study - Dataset and scripts

description: This repository contains datasets and scripts for the paper: CI/CD Pipelines Evolution and Restructuring: A Qualitative and Quantitative Study
DOI: 10.5281/zenodo.5005802
title: Data for: The interaction between metabolic rate, habitat choice, and resource use in a polymorphic freshwater species

description: Raw respirometry data and respirometry code Data about each fish that was used for all analyses including Stable Isotope values, length, weight, sex, and habitat. Example code of the models used in our analyses
DOI: 10.5281/zenodo.5005884
title: 3D microphone arrays survey

description: Subjective ratings of audio recordings made using various 3D microphone arrays.
DOI: 10.5281/zenodo.5005883
title: 3D microphone arrays survey

description: Subjective ratings of audio recordings made using various 3D microphone arrays.
DOI: 10.5281/zenodo.4817695
title: Dataset related to the article "Detection of Mechanical Prosthetic Valve Dysfunction"

description: This record contains raw data related to the article “Detection of Mechanical Prosthetic Valve Dysfunction". The long-term outcome of mechanical aortic and mitral prosthetic valve (A-PV, M-PV)dysfunction (PVD) remains a serious complication associated with high morbidity and mortality. We sought to evaluate the incremental diagnostic value of combined transthoracic echocardiography (TTE) and fluoroscopy (F) in patients with suspected PVD. A total of 354 patients (178 A-PV, 176 M-PV) were imaged by TTE and F within 5 days of hospital admission. PVD was confirmed by transesophageal echocardiography, computed tomography, effective thrombolysis, or surgical inspection. PVD was confirmed in 101 patients(57%) with M-PV and 99 (55%) with A-PV. Regardless of the mechanism of PVD, TTE shows good sensitivity and specificity, with accuracy of 80% for M-PV and 91% for A-PV. F shows high specificity, but low sensitivity with accuracy of 68% for M-PV and 78% for A-PV. The integration of TTE + F significantly improved accuracy both for M-PV (83%)and A-PV (96%). At ROC analysis, the combined model of TTE + F showed the highest area under the curve for the detection of PVD compared with TTE and F alone (p&lt;0.001). In conclusion, in patients with a clinical suspicion of PVD, the combined model of TTE + F offers incremental value over TTE or F alone. This multimodality imaging approach overcomes limitations of TTE or F alone and provides prompt identification of patients who may require further imaging assessment and/or closer follow up.
DOI: 10.5281/zenodo.4817694
title: Dataset related to the article "Detection of Mechanical Prosthetic Valve Dysfunction"

description: This record contains raw data related to the article “Detection of Mechanical Prosthetic Valve Dysfunction". The long-term outcome of mechanical aortic and mitral prosthetic valve (A-PV, M-PV)dysfunction (PVD) remains a serious complication associated with high morbidity and mortality. We sought to evaluate the incremental diagnostic value of combined transthoracic echocardiography (TTE) and fluoroscopy (F) in patients with suspected PVD. A total of 354 patients (178 A-PV, 176 M-PV) were imaged by TTE and F within 5 days of hospital admission. PVD was confirmed by transesophageal echocardiography, computed tomography, effective thrombolysis, or surgical inspection. PVD was confirmed in 101 patients(57%) with M-PV and 99 (55%) with A-PV. Regardless of the mechanism of PVD, TTE shows good sensitivity and specificity, with accuracy of 80% for M-PV and 91% for A-PV. F shows high specificity, but low sensitivity with accuracy of 68% for M-PV and 78% for A-PV. The integration of TTE + F significantly improved accuracy both for M-PV (83%)and A-PV (96%). At ROC analysis, the combined model of TTE + F showed the highest area under the curve for the detection of PVD compared with TTE and F alone (p&lt;0.001). In conclusion, in patients with a clinical suspicion of PVD, the combined model of TTE + F offers incremental value over TTE or F alone. This multimodality imaging approach overcomes limitations of TTE or F alone and provides prompt identification of patients who may require further imaging assessment and/or closer follow up.
DOI: 10.5281/zenodo.4700018
title: Dataset related to the article "Predicting Long-Term Mortality in TAVI Patients Using Machine Learning Techniques"

description: This record contains raw data related to the article "Predicting Long-Term Mortality in TAVI Patients Using Machine Learning Techniques" Background: Whereas transcatheter aortic valve implantation (TAVI) has become the gold standard for aortic valve stenosis treatment in high-risk patients, it has recently been extended to include intermediate risk patients. However, the mortality rate at 5 years is still elevated. The aim of the present study was to develop a novel machine learning (ML) approach able to identify the best predictors of 5-year mortality after TAVI among several clinical and echocardiographic variables, which may improve the long-term prognosis. Methods: We retrospectively enrolled 471 patients undergoing TAVI. More than 80 pre-TAVI variables were collected and analyzed through different feature selection processes, which allowed for the identification of several variables with the highest predictive value of mortality. Different ML models were compared. Results: Multilayer perceptron resulted in the best performance in predicting mortality at 5 years after TAVI, with an area under the curve, positive predictive value, and sensitivity of 0.79, 0.73, and 0.71, respectively. Conclusions: We presented an ML approach for the assessment of risk factors for long-term mortality after TAVI to improve clinical prognosis. Fourteen potential predictors were identified with the organic mitral regurgitation (myxomatous or calcific degeneration of the leaflets and/or annulus) which showed the highest impact on 5 years mortality.
DOI: 10.5281/zenodo.4700017
title: Dataset related to the article "Predicting Long-Term Mortality in TAVI Patients Using Machine Learning Techniques"

description: This record contains raw data related to the article "Predicting Long-Term Mortality in TAVI Patients Using Machine Learning Techniques" Background: Whereas transcatheter aortic valve implantation (TAVI) has become the gold standard for aortic valve stenosis treatment in high-risk patients, it has recently been extended to include intermediate risk patients. However, the mortality rate at 5 years is still elevated. The aim of the present study was to develop a novel machine learning (ML) approach able to identify the best predictors of 5-year mortality after TAVI among several clinical and echocardiographic variables, which may improve the long-term prognosis. Methods: We retrospectively enrolled 471 patients undergoing TAVI. More than 80 pre-TAVI variables were collected and analyzed through different feature selection processes, which allowed for the identification of several variables with the highest predictive value of mortality. Different ML models were compared. Results: Multilayer perceptron resulted in the best performance in predicting mortality at 5 years after TAVI, with an area under the curve, positive predictive value, and sensitivity of 0.79, 0.73, and 0.71, respectively. Conclusions: We presented an ML approach for the assessment of risk factors for long-term mortality after TAVI to improve clinical prognosis. Fourteen potential predictors were identified with the organic mitral regurgitation (myxomatous or calcific degeneration of the leaflets and/or annulus) which showed the highest impact on 5 years mortality.
DOI: 10.5517/ccdc.csd.cc1lg136
title: CCDC 1473247: Experimental Crystal Structure Determination

description: Related Article: Aman KK Bhasin, Sanjay K. Mandal|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc24vrb3
title: CCDC 1991915: Experimental Crystal Structure Determination

description: Related Article: K.S. Smirnova, E.A. Ivanova, T.S. Sukhikh, I.P. Pozdnyakov, V.V. Dotsenko, E.V. Lider|2021|Inorg.Chim.Acta|525|120490|doi:10.1016/j.ica.2021.120490
DOI: 10.5517/ccdc.csd.cc27614n
title: CCDC 2061380: Experimental Crystal Structure Determination

description: Related Article: Konrad Dyk, Łukasz Baran, Wojciech Rżysko, Marek Stankevič, Daniel M. Kamiński|2021|CrystEngComm|23|2683|doi:10.1039/D0CE01673J
description: Related Article: Konrad Dyk|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27617r
title: CCDC 2061383: Experimental Crystal Structure Determination

description: Related Article: Konrad Dyk, Łukasz Baran, Wojciech Rżysko, Marek Stankevič, Daniel M. Kamiński|2021|CrystEngComm|23|2683|doi:10.1039/D0CE01673J
description: Related Article: Konrad Dyk|2021|CSD Communication|||
DOI: 10.5281/zenodo.4999119
title: Dryas octopetala SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4999118
title: Dryas octopetala SPAdes preassembly

description: .
DOI: 10.26066/rds.1972676
title: Data on socio-economic factors leading to open agricultural burning in Nepal

description: This study investigated the socio-economic factors leading to open agricultural burning in Nawalparasi, Kapilvastu and Rupandehi districts in Nepal. The data set consists of survey data from 388 farmers across the 3 districts in Nepal�s Terai region on their crop residue management practices. Data on demographic profile, income, asset and agricultural land use was used to supplement the surveyed data. The survey was carried out under ICIMOD�s Atmosphere Initiative in 2017.
DOI: 10.5517/ccdc.csd.cc27r1pr
title: CCDC 2077734: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Johannes Wefer, Thomas Lindel|2021|CSD Communication|||
DOI: 10.5281/zenodo.4452140
title: Dataset related to the article "Presence of SARS-CoV-2 nucleoprotein in cardiac tissues of donors negative to COVID-19 molecular tests"

description: This record contains raw data related to the article “Presence of SARS-CoV-2 nucleoprotein in cardiac tissues of donors negative to COVID-19 molecular tests” Abstract <strong>Background:</strong> COVID-19 outbreak caused detrimental effects on essential medical services as organ and tissue donation. Lombardy, one of the most active Italian region in organ/tissue procurement, has been strongly affected by the COVID-19 pandemic. To date, data concerning the risk of SARS-CoV-2 transmission after tissue transplantation are controversial. Here we aim to evaluate the presence/absence of SARS-CoV-2 in different cardiac tissues eligible for transplantation obtained from Lombard donors. <strong>Methods and Results:</strong> We used cardiovascular tissues from eight donors potentially suitable for pulmonary valve transplantation. All donor subjects involved in the study were negative for the SARS-CoV-2 RNA molecular tests (qRT-PCR and chip-based digital PCR) in NPS and/or BAL. None of the 8 donors included in this study revealed viral genome SARS-CoV-2 presence. However, the evaluation of protein content of pulmonary vein wall (PVW) tissue revealed in all donors variable levels of SARS-CoV-2 nucleoprotein signal. <strong>Conclusion:</strong> Our study demonstrated for the first time, to the best of our knowledge, that, viral nucleoprotein but not viral RNA was present in the tissue bank examined specimens, suggesting caution and in-depth investigations on implantable tissue specimens collected during COVID-19 pandemic period.
description: This work was supported by Italian Ministry of Health (RC-2019-CA1E-2755807; RC-2020-MPP-COVID3-2762326) and Fondazione Gigi e Pupa Ferrari ONLUS (FPF-14).
DOI: 10.5281/zenodo.4452139
title: Dataset related to the article "Presence of SARS-CoV-2 nucleoprotein in cardiac tissues of donors negative to COVID-19 molecular tests"

description: This record contains raw data related to the article “Presence of SARS-CoV-2 nucleoprotein in cardiac tissues of donors negative to COVID-19 molecular tests” Abstract <strong>Background:</strong> COVID-19 outbreak caused detrimental effects on essential medical services as organ and tissue donation. Lombardy, one of the most active Italian region in organ/tissue procurement, has been strongly affected by the COVID-19 pandemic. To date, data concerning the risk of SARS-CoV-2 transmission after tissue transplantation are controversial. Here we aim to evaluate the presence/absence of SARS-CoV-2 in different cardiac tissues eligible for transplantation obtained from Lombard donors. <strong>Methods and Results:</strong> We used cardiovascular tissues from eight donors potentially suitable for pulmonary valve transplantation. All donor subjects involved in the study were negative for the SARS-CoV-2 RNA molecular tests (qRT-PCR and chip-based digital PCR) in NPS and/or BAL. None of the 8 donors included in this study revealed viral genome SARS-CoV-2 presence. However, the evaluation of protein content of pulmonary vein wall (PVW) tissue revealed in all donors variable levels of SARS-CoV-2 nucleoprotein signal. <strong>Conclusion:</strong> Our study demonstrated for the first time, to the best of our knowledge, that, viral nucleoprotein but not viral RNA was present in the tissue bank examined specimens, suggesting caution and in-depth investigations on implantable tissue specimens collected during COVID-19 pandemic period.
description: This work was supported by Italian Ministry of Health (RC-2019-CA1E-2755807; RC-2020-MPP-COVID3-2762326) and Fondazione Gigi e Pupa Ferrari ONLUS (FPF-14).
DOI: 10.5281/zenodo.4999319
title: Electrophorus voltai SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4999318
title: Electrophorus voltai SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5006007
title: SiEUGreen - Data for 'Deep Learning in Hyperspectral Image Reconstruction from Single RGB images—A Case Study on Tomato Quality Parameters'

description: Dataset used in the scientific publication 'Deep Learning in Hyperspectral Image Reconstruction from Single RGB images—A Case Study on Tomato Quality Parameters'. The data includes chemical contents of tomatoes that was measured, images and scripts used in the paper. The scripts here aim to predict tomato quality parameters, sugar content, acidity, sugar acid ratio and lycopene, of automatically segmented tomato through hyperspectral image reconstruction from single RGB image. The same data can also be found at the Github repository. The data collection and scientific paper was produced by SiEUGreen partners at Norwegian Institute of Bioeconomy Research (NIBIO).
DOI: 10.5281/zenodo.5006006
title: SiEUGreen - Data for 'Deep Learning in Hyperspectral Image Reconstruction from Single RGB images—A Case Study on Tomato Quality Parameters'

description: Dataset used in the scientific publication 'Deep Learning in Hyperspectral Image Reconstruction from Single RGB images—A Case Study on Tomato Quality Parameters'. The data includes chemical contents of tomatoes that was measured, images and scripts used in the paper. The scripts here aim to predict tomato quality parameters, sugar content, acidity, sugar acid ratio and lycopene, of automatically segmented tomato through hyperspectral image reconstruction from single RGB image. The same data can also be found at the Github repository. The data collection and scientific paper was produced by SiEUGreen partners at Norwegian Institute of Bioeconomy Research (NIBIO).
DOI: 10.6084/m9.figshare.14779236.v1
title: Sample assemblies masks

description: Sample assemblies masks used in the analyses of paper Colquhoun et al. "Nucleotide-resolution bacterial pan-genomics with reference graphs".
DOI: 10.6084/m9.figshare.14779236
title: Sample assemblies masks

description: Sample assemblies masks used in the analyses of paper Colquhoun et al. "Nucleotide-resolution bacterial pan-genomics with reference graphs".
DOI: 10.5281/zenodo.4467857
title: A systematic review on uncertainty appraisal and sensitivity analysis in life cycle-assessment - supporting material

description: Publication dataset - A systematic review on uncertainty appraisal and sensitivity analysis in life cycle-assessment (<em>under consideration for publication in the Journal of Industrial Ecology</em>).
DOI: 10.6084/m9.figshare.14779278.v1
title: Sample ST38 assembly

description: Sample ST38 assembly used in the analyses of paper Colquhoun et al. "Nucleotide-resolution bacterial pan-genomics with reference graphs".
DOI: 10.6084/m9.figshare.14779278
title: Sample ST38 assembly

description: Sample ST38 assembly used in the analyses of paper Colquhoun et al. "Nucleotide-resolution bacterial pan-genomics with reference graphs".
DOI: 10.6084/m9.figshare.14781732
title: PanX/Piggy MSAs

description: MSAs for gene clusters curated with PanX from 350 RefSeq assemblies, and for intergenic region clusters based on 228 E. coli ST131 genome sequences generated with Piggy, used to build the E. Coli PanRG (see paper Colquhoun et al. "Nucleotide-resolution bacterial pan-genomics with reference graphs").
DOI: 10.6084/m9.figshare.14781732.v1
title: PanX/Piggy MSAs

description: MSAs for gene clusters curated with PanX from 350 RefSeq assemblies, and for intergenic region clusters based on 228 E. coli ST131 genome sequences generated with Piggy, used to build the E. Coli PanRG (see paper Colquhoun et al. "Nucleotide-resolution bacterial pan-genomics with reference graphs").
DOI: 10.6084/m9.figshare.14781756
title: E. coli PanRG

description: E. coli PanRG used in the analyses of paper Colquhoun et al. "Nucleotide-resolution bacterial pan-genomics with reference graphs".
DOI: 10.5281/zenodo.5006055
title: Training of 7-month-old infants' manual object exploration skills: Effects of active and observational experience

description: Dataset representing the data of the paper "Training of 7-month-old infants' manual object exploration skills: Effects of active and observational experience."
description: Funded by the DFG (Deutsche Forschungsgemeinschaft) - SFB TRR 135
DOI: 10.5281/zenodo.5006054
title: Training of 7-month-old infants' manual object exploration skills: Effects of active and observational experience

description: Dataset representing the data of the paper "Training of 7-month-old infants' manual object exploration skills: Effects of active and observational experience."
description: Funded by the DFG (Deutsche Forschungsgemeinschaft) - SFB TRR 135
DOI: 10.25646/8678
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq