cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zab68n
title: Occurrence Download

description: A dataset containing 72223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bromus diandrus Roth)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 72223 records from 942 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010979-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qu5hr8
title: Occurrence Download

description: A dataset containing 610 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Astragalus mollissimus Torr.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 610 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010987-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cb4m8c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia Parr, 1937",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 -7.1504,26.9648 -7.1504,26.9648 -16.1504,35.9648 -16.1504,35.9648 -7.1504))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010988-250525065834625/datasets/export for details.
DOI: 10.15468/dl.548zgf
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Astragalus propinquus Schischk.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010989-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4w866
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia Parr, 1937",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 19.8496,26.9648 19.8496,26.9648 10.8496,35.9648 10.8496,35.9648 19.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010991-250525065834625/datasets/export for details.
DOI: 10.15468/dl.7utrx8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia Parr, 1937",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 10.8496,26.9648 10.8496,26.9648 1.8496,35.9648 1.8496,35.9648 10.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010992-250525065834625/datasets/export for details.
DOI: 10.15468/dl.h8psda
title: Occurrence Download

description: A dataset containing 10813 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Astrantia major L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 10813 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010993-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10963033
title: Improved multi-ancestry fine-mapping identifies cis-regulatory variants underlying molecular traits and disease risk

description: sushie.molqtl.weights.tar.gz contains ancestry-specific eQTL and pQTL weights trained on mRNA and protein levels measured in American European, American African, and American Hispanic ancestries from TOPMed-MESA and GENOA studies. Column “a1” is the counting allele.

mesa.*.fusion.tar.gz contains the weights in FUSION format.

sushie_real_data_results.tar.gz contains all the real data analyzed in the sushie project.

sushie_sim_data_results.tar.gz contains all the sim data analyzed in the sushie project.

sushie_analysis_codes.tar.gz contains all the codes and scripts to generate and analyze these data.
DOI: 10.5281/zenodo.10963034
title: Improved multi-ancestry fine-mapping identifies cis-regulatory variants underlying molecular traits and disease risk

description: sushie.molqtl.weights.tar.gz contains ancestry-specific eQTL and pQTL weights trained on mRNA and protein levels measured in American European, American African, and American Hispanic ancestries from TOPMed-MESA and GENOA studies.

 

sushie.all.results.tar.gz contains all the analyzed results in the sushie project.
DOI: 10.5281/zenodo.14201394
title: Improved multi-ancestry fine-mapping identifies cis-regulatory variants underlying molecular traits and disease risk

description: sushie.molqtl.weights.tar.gz contains ancestry-specific eQTL and pQTL weights trained on mRNA and protein levels measured in American European, American African, and American Hispanic ancestries from TOPMed-MESA and GENOA studies.

mesa.*.fusion.tar.gz contains the weights in FUSION format.

sushie.all.results.tar.gz contains all the analyzed results in the sushie project.
DOI: 10.5281/zenodo.14863074
title: Improved multi-ancestry fine-mapping identifies cis-regulatory variants underlying molecular traits and disease risk

description: sushie.molqtl.weights.tar.gz contains ancestry-specific eQTL and pQTL weights trained on mRNA and protein levels measured in American European, American African, and American Hispanic ancestries from TOPMed-MESA and GENOA studies.

mesa.*.fusion.tar.gz contains the weights in FUSION format.

sushie.results.tar.gz contains all the analyzed results in the sushie project.
DOI: 10.5281/zenodo.14889848
title: Improved multi-ancestry fine-mapping identifies cis-regulatory variants underlying molecular traits and disease risk

description: sushie.molqtl.weights.tar.gz contains ancestry-specific eQTL and pQTL weights trained on mRNA and protein levels measured in American European, American African, and American Hispanic ancestries from TOPMed-MESA and GENOA studies.

mesa.*.fusion.tar.gz contains the weights in FUSION format.

sushie.results.tar.gz contains all the real data analyzed in the sushie project.

sim.result.tar.gz contains all the sim data analyzed in the sushie project.
DOI: 10.5281/zenodo.14963211
title: Improved multi-ancestry fine-mapping identifies cis-regulatory variants underlying molecular traits and disease risk

description: sushie.molqtl.weights.tar.gz contains ancestry-specific eQTL and pQTL weights trained on mRNA and protein levels measured in American European, American African, and American Hispanic ancestries from TOPMed-MESA and GENOA studies. Column “a1” is the counting allele.

mesa.*.fusion.tar.gz contains the weights in FUSION format.

sushie.results.tar.gz contains all the real data analyzed in the sushie project.

sim.result.tar.gz contains all the sim data analyzed in the sushie project.

For the scripts to generate and analyze these data, please check out the GitHub page at https://github.com/mancusolab/sushie-project-codes
DOI: 10.5281/zenodo.14991064
title: Improved multi-ancestry fine-mapping identifies cis-regulatory variants underlying molecular traits and disease risk

description: sushie.molqtl.weights.tar.gz contains ancestry-specific eQTL and pQTL weights trained on mRNA and protein levels measured in American European, American African, and American Hispanic ancestries from TOPMed-MESA and GENOA studies. Column “a1” is the counting allele.

mesa.*.fusion.tar.gz contains the weights in FUSION format.

sushie.results.tar.gz contains all the real data analyzed in the sushie project.

sim.result.tar.gz contains all the sim data analyzed in the sushie project.

For the scripts to generate and analyze these data, please check out the GitHub page at https://github.com/mancusolab/sushie-project-codes
DOI: 10.5281/zenodo.15558554
title: Improved multi-ancestry fine-mapping identifies cis-regulatory variants underlying molecular traits and disease risk

description: sushie.molqtl.weights.tar.gz contains ancestry-specific eQTL and pQTL weights trained on mRNA and protein levels measured in American European, American African, and American Hispanic ancestries from TOPMed-MESA and GENOA studies. Column “a1” is the counting allele.

mesa.*.fusion.tar.gz contains the weights in FUSION format.

sushie_real_data_results.tar.gz contains all the real data analyzed in the sushie project.

sushie_sim_data_results.tar.gz contains all the sim data analyzed in the sushie project.

sushie_analysis_codes.tar.gz contains all the codes and scripts to generate and analyze these data.
DOI: 10.15468/dl.uy93xn
title: Occurrence Download

description: A dataset containing 28395327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 28395327 records from 2172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010957-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16910365
title: Dataset: Chou-Talalay-defined dose-dependent synergy of black shallot (Allium ascalonicum) and nano-curcumin via NF-κB/COX-2 modulation in DMBA-induced breast cancer
DOI: 10.5281/zenodo.16910366
title: Dataset: Chou-Talalay-defined dose-dependent synergy of black shallot (Allium ascalonicum) and nano-curcumin via NF-κB/COX-2 modulation in DMBA-induced breast cancer
DOI: 10.15468/dl.w96etm
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Egypt",
 "TaxonKey is Tamarix aphylla (L.) H.Karst."
 ]
}

 The dataset includes 65 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009835-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4dmtr
title: Occurrence Download

description: A dataset containing 1823 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registro de varamientos de megafauna marina en Ecuador continental"
 ]
}

 The dataset includes 1823 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009836-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18373020
title: Ameloblastoma snRNA/snATAC multiome processed Seurat object (RDS) for WNN integration and pseudotime analyses

description: This repository provides the processed Seurat/Signac objects (RDS) and associated analysis scripts used in our study submitted to Cell Reports Medicine. The data supports key findings including WNN integration, TF motif enrichment, and trajectory/pseudotime inference. The complete computational workflow is contained within ameloblastoma-multiome-analysis-main.zip. To ensure reproducibility and maintain relative file paths, users should unzip the archive and launch the analysis via the provided .Rproj file in RStudio.
DOI: 10.15468/dl.p99cfc
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dalbergia cochinchinensis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 71 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002743-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.z34tmpgc9
title: Orientation behavior of riparian Long-Jawed Orb Weavers (Tetragnatha elongata) after displacement over water

description: Many organisms possess remarkable abilities to orient and navigate within
 their environment to achieve goals. We examined the orientation behavior
 of a riparian spider, the Long-Jawed Orb Weaver (Tetragnatha elongata),
 when displaced onto the surface of the water. When displaced, spiders move
 with alternating movements of the first three leg-pairs while dragging the
 most posterior pair of legs behind them. In addition, spiders often
 perform a series of orientation behaviors consisting of concentric circles
 before ultimately choosing a path of travel directly towards the nearest
 point to land. While the number of orientation behaviors increased with
 increasing distance from shore, distance had no effect on the direction of
 travel, which was significantly oriented toward the closest shoreline.
 These results indicate a complex ability to orient toward land when
 displaced onto water, possibly to decrease the amount of time on the
 surface of the water and thus decrease predation risk.
DOI: 10.5061/dryad.r4xgxd2bf
title: Sociability increases survival of adult female giraffes

description: Studies increasingly show that social connectedness plays a key role in
 determining survival, in addition to natural and anthropogenic
 environmental factors. Few studies, however, integrated social,
 non-social, and demographic data to elucidate what components of an
 animal’s socio-ecological environment are most important to their
 survival. Female giraffes (Giraffa camelopardalis) form structured
 societies with highly dynamic group membership but stable long-term
 associations. We examined the relative contributions of sociability
 (relationship strength, gregariousness, and betweenness), together with
 those of the natural (food sources and vegetation types) and anthropogenic
 environment (distance from human settlements), to adult female giraffe
 survival. We tested predictions about the influence of sociability and
 natural and human factors at two social levels: the individual and the
 social community. Survival was primarily driven by individual- rather than
 community-level social factors. Gregariousness (the number of other
 females each individual was observed with on average) was most important
 in explaining variation in female adult survival, more than other social
 traits and any natural or anthropogenic environmental factors. For adult
 female giraffes, grouping with more other females, even as group
 membership frequently changes, is correlated with better survival, and
 this sociability appears to be more important than several attributes of
 their non-social environment.
description: Individual giraffe data were collected over 5 years (Jan 2012-
 Oct 2016) in the Tarangire Ecosystem of northern Tanzania using
 photographic capture-resight techniques. Surveys were conducted 6 times
 per year using a robust design. All tracks were driven once per survey.
 Individuals were identified using Wild-ID pattern recognition software.
 Social network analysis was used to calculate individual social metrics
 edge weight, gregariousness, and betweenness, and to detect social
 communities. The dataset Giraffe_Community_Covariates contains data on
 community-level values for environmental covariates for input into a
 design matrix in Program MARK. The dataset Giraffe_Survival is an
 encounter history for 512 individual adult female giraffes and social and
 non-social covariates structured as an input file for Program MARK. For
 input into Program MARK, convert Giraffe_Survival to an .INP file using
 methodology outlined in Cooch EG, White GC. 2019 Program MARK: A gentle
 introduction. 19th edition.
DOI: 10.5061/dryad.547d7wm7c
title: Dataset to find corresponding ages across the lifespan in humans and chimpanzees

description: How the unique capacities of human cognition arose in evolution is a
 question of enduring interest. It is still unclear which developmental
 programs are responsible for the emergence of the human brain. The
 inability to determine corresponding ages between humans and apes has
 hampered progress in detecting developmental programs leading to the
 emergence of the human brain. I harness temporal variation in anatomical,
 behavioral, and transcriptional variation to determine corresponding ages
 from fetal to postnatal development and aging, between humans and
 chimpanzees. This multi-dimensional approach results in 137 corresponding
 time points across the lifespan, from embryonic day 44 to ~55 years of
 age, in humans and their equivalent ages in chimpanzees. I used these data
 to test whether developmental programs, such as the timeline of prefrontal
 cortex (PFC) maturation, previously claimed to differ between humans and
 chimpanzees, do so once variation in developmental schedules is controlled
 for. I compared the maturation of frontal cortex projections from
 structural magnetic resonance (MR) scans and from temporal variation in
 the expression of genes used to track long-range projecting neurons (i.e.,
 supragranular-enriched genes) in chimpanzees and humans. Contrary to what
 has been suggested, the timetable of PFC maturation is not unusually
 extended in humans. This dataset, which is the largest with which to
 determine corresponding ages across humans and chimpanzees, provides a
 rigorous approach to control for variation in developmental schedules and
 to identify developmental programs responsible for unique features of the
 human brain.  
description: Please use the table and script captions (the readme document) as
 well as the paper for an extended explanation of this dataset.
DOI: 10.7280/d1jm40
title: Data from: Unraveling the ecological and evolutionary impacts of a plant invader on the pollination of a native plant

description: Interactions between a native plant species and its pollinators,
 herbivores, or microbiome can be affected by the presence of non-native
 plant species. Non-native plant species are altering plant-pollinator
 interactions, yet we know little about how these non-native species
 influence natural selection. In addition, year-to-year variation in
 flowering could influence the impacts of non-native species on
 reproductive success in native plants and the strength and direction of
 pollinator-mediated selection. We examined whether the presence of the
 highly invasive plant Linaria vulgaris influenced average pollinator
 visitation, species composition of floral visitors, or pollinator-mediated
 selection in the native Penstemon strictus. In the field, we conducted
 small scale L. vulgaris inflorescence removals, that were repeated through
 three years. Pollinator-mediated selection on the floral trait of platform
 length was examined by determining the relationships between platform
 length and visitation, between visitation and seed production, and by
 calculating net selection based on seed production. We found that the
 presence of L. vulgaris on a small spatial scale facilitated pollinator
 visitation rates to P. strictus but did not influence pollinator-mediated
 selection on platform length. Pollinator visitation varied across years,
 as did the relationship between seed production and pollinator visitation,
 and the relationship between pollinator visitation and platform length.
 Although components of selection varied across years, no net selection on
 platform length was detected in any of the three years. Our results show
 how the presence of an invasive plant and year-to-year variation in
 plant-pollinator interactions affect the pollination and components of
 pollinator-mediated selection in native plants.
description: Methods are explained in the research article.
description: Plant-Level Data<br> Data documenting platform length and
 pollinator visitation to Penstemon strictus in the presence or removal of
 Linaria vulgaris. Data were collected from 2015 to 2017.<br> File
 name: BioInv_RMBL_raw_data.csv README<br> This
 file contains descriptions for each column in the Plant-Level Data
 file.<br> File name: README.txt
DOI: 10.5061/dryad.79cnp5htm
title: Three-dimensional biofilm growth supports a mutualism involving matrix and nutrient sharing - related scripts and data

description: This dataset contains the supporting scripts and data used to analyze
 co-culture fluorescent colony images in high-throughput. It contains some
 example images that can be used in the scripts. It also contains the
 script used to plot and determine the maximum growth rates of growth
 curves of some of the mutants and the script used to stitch overlapping
 microscope images.
description: Methods are included in the following manuscript (link below to
 biorxiv, in review at eLife): Three-dimensional biofilm growth supports a
 mutualism involving matrix and nutrient sharing manuscript by Arjes et
 al.
description: Usage notes are included on each script and accompanying ReadMe
 files when appropriate.