cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id259531.1
title: StrainInfo SI-ID 259531.1

description: StrainInfo dataset 259531 about a strain of Lentinula edodes. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259676.1
title: StrainInfo SI-ID 259676.1

description: StrainInfo dataset 259676 about a strain of Agaricus vaporarius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259532.1
title: StrainInfo SI-ID 259532.1

description: StrainInfo dataset 259532 about a strain of Lentinula edodes. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259533.1
title: StrainInfo SI-ID 259533.1

description: StrainInfo dataset 259533 about a strain of Lentinula edodes. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259534.1
title: StrainInfo SI-ID 259534.1

description: StrainInfo dataset 259534 about a strain of Lentinula edodes. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259535.1
title: StrainInfo SI-ID 259535.1

description: StrainInfo dataset 259535 about a strain of Pleurotus ostreatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259603.1
title: StrainInfo SI-ID 259603.1

description: StrainInfo dataset 259603 about a strain of Agaricus bitorquis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259604.1
title: StrainInfo SI-ID 259604.1

description: StrainInfo dataset 259604 about a strain of Agaricus vaporarius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.8d1hsr
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mangifera minor Blume",
 "Country is Indonesia"
 ]
}

 The dataset includes 108 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077152-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id259605.1
title: StrainInfo SI-ID 259605.1

description: StrainInfo dataset 259605 about a strain of Agaricus vaporarius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259606.1
title: StrainInfo SI-ID 259606.1

description: StrainInfo dataset 259606 about a strain of Agaricus vaporarius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259677.1
title: StrainInfo SI-ID 259677.1

description: StrainInfo dataset 259677 about a strain of Agaricus silvicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259678.1
title: StrainInfo SI-ID 259678.1

description: StrainInfo dataset 259678 about a strain of Agaricus silvicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259679.1
title: StrainInfo SI-ID 259679.1

description: StrainInfo dataset 259679 about a strain of Agaricus silvicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259536.1
title: StrainInfo SI-ID 259536.1

description: StrainInfo dataset 259536 about a strain of Epidermophyton floccosum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259680.1
title: StrainInfo SI-ID 259680.1

description: StrainInfo dataset 259680 about a strain of Agaricus arvensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id259537.1
title: StrainInfo SI-ID 259537.1

description: StrainInfo dataset 259537 about a strain of Microsporum canis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.a7vrnd
title: Occurrence Download

description: A dataset containing 3807 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chenopodium quinoa Willd., Chenopodium quinoa var. glomerulatum Cárdenas, 1944, Chenopodium quinoa var. viridescens Moq., Chenopodium quinoa f. choque-pitu Cárdenas, Chenopodium quinoa f. huatajatanum Cárdenas, Chenopodium quinoa f. leuco-flavospermum Cárdenas, Chenopodium quinoa f. albidomacrospermum Cárdenas, Chenopodium quinoa f. albidocinereum Cárdenas, Chenopodium quinoa f. albolucidum Cárdenas, Chenopodium quinoa var. laciniatum Moq., Chenopodium quinoa f. cami-hupa Cárdenas, Chenopodium quinoa f. gracilius Cárdenas, Chenopodium quinoa var. melanospermum Hunz., Chenopodium quinoa subsp. milleanum Aellen, Chenopodium quinoa f. lilacinum Cárdenas, Chenopodium quinoa var. rubescens Moq., Chenopodium quinoa f. kcella Cárdenas, Chenopodium quinoa var. lutescens Hunz., Chenopodium quinoa f. real Cárdenas, Chenopodium quinoa f. jaru Cárdenas, Chenopodium quinoa var. orbicans Murr, Chenopodium quinoa f. purpuricaule Cárdenas, Chenopodium quinoa f. pseudoamarantiforme Cárdenas, Chenopodium quinoa f. roseocinereum Cárdenas, Chenopodium quinoa f. parvo-incrassatum Cárdenas, Chenopodium quinoa f. rubrinervium Cárdenas, Chenopodium quinoa f. purpureum Aellen, Chenopodium quinoa var. quinoa, Chenopodium quinoa f. subviridocinereum Cárdenas, Chenopodium album subsp. quinoa (Willd.) Kuntze, Chenopodium album var. quinoa (Willd.) Alef., Chenopodium hircinum var. quinoa (Willd.) Aellen, Chenopodium quinoa f. pillapense Cárdenas, Chenopodium album var. quinoa (Willd.) Kuntze)"
 ]
}

 The dataset includes 3807 records from 193 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082773-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frtwyx
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pagurus kulkarnii Sankolli, 1962"
 ]
}

 The dataset includes 39 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127429-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.duf66n
title: Occurrence Download

description: A dataset containing 917098 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen, Machine Observation, Material sample, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "TaxonKey is Sciurus Linnaeus, 1758",
 "Year 1000-2022"
 ]
}

 The dataset includes 917098 records from 1673 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118751-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2myn5a
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Taphromysis louisianae",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008051-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25413/sun.31238719
title: Gene tree discordance, rapid diversification and convergence impact phylogenetic inference in Zygophylloideae

description: These files contain ion- semi-conductor sequence data and contiguous sequence read assemblies. The data were generated from seven plant species, namely Tribulus terrestris, Augea capensis, Fagonia rangei, Roepera foetida, Teraena turbinata (nom. ined.), Zygophytllum stapffii and Zygophyllum fabago.Article Abstract:<br>The Zygophyllaceae subfamily Zygophylloideae includes seven genera and around 180 species distributed worldwide particularly in arid areas where they show various adaptations to drought including C4 and CAM photosynthesis. Phylogenetic relationships of Zygophylloideae have been analysed in several studies using Sanger sequenced markers, but deeper relationships between clades have remained recalcitrant. Here, we use ion semi-conductor sequencing of chloroplast and nuclear ribosomal regions to analyse these relationships and assess why they have proved so challenging to resolve. We analyse new data for 39 chloroplast genes and nuclear ribosomal 18S, 5.8S, and 26S gene and internal transcribed spacers for key species of Zygophyllum sensu stricto, Roepera, Tetraena, Fagonia, Zygophyllum stapffii and monotypic Augea capensis; and Tribulus of the subfamily Tribuloideae as outgroup, compared this to published chloroplast genomes, summarising phylogenetic results separately from non-coding introns and intergenic spacers, photosynthetic genes and non-photosynthetic genes. We combined this data with sequences of three highly variable noncoding chloroplast regions and ITS used in previous studies of greater numbers of taxa and assessed the effect on phylogenetic inference. We used a chloroplast sequence matrix to infer a dated phylogeny. Adding data did not always improve phylogenetic resolution which was impacted by non-informative variation in chloroplast photosynthesis related genes as well as by conflicting chloroplast and nuclear signals. This provides evidence for both selection and introgressive hybridization and/or incomplete lineage sorting during an ancient rapid divergence that will require multiple independent, informative, and neutral gene trees to resolve.
DOI: 10.25413/sun.31238719.v2
title: Gene tree discordance, rapid diversification and convergence impact phylogenetic inference in Zygophylloideae

description: These files contain ion- semi-conductor sequence data and contiguous sequence read assemblies. The data were generated from seven plant species, namely Tribulus terrestris, Augea capensis, Fagonia rangei, Roepera foetida, Teraena turbinata (nom. ined.), Zygophytllum stapffii and Zygophyllum fabago.Article Abstract:<br>The Zygophyllaceae subfamily Zygophylloideae includes seven genera and around 180 species distributed worldwide particularly in arid areas where they show various adaptations to drought including C4 and CAM photosynthesis. Phylogenetic relationships of Zygophylloideae have been analysed in several studies using Sanger sequenced markers, but deeper relationships between clades have remained recalcitrant. Here, we use ion semi-conductor sequencing of chloroplast and nuclear ribosomal regions to analyse these relationships and assess why they have proved so challenging to resolve. We analyse new data for 39 chloroplast genes and nuclear ribosomal 18S, 5.8S, and 26S gene and internal transcribed spacers for key species of Zygophyllum sensu stricto, Roepera, Tetraena, Fagonia, Zygophyllum stapffii and monotypic Augea capensis; and Tribulus of the subfamily Tribuloideae as outgroup, compared this to published chloroplast genomes, summarising phylogenetic results separately from non-coding introns and intergenic spacers, photosynthetic genes and non-photosynthetic genes. We combined this data with sequences of three highly variable noncoding chloroplast regions and ITS used in previous studies of greater numbers of taxa and assessed the effect on phylogenetic inference. We used a chloroplast sequence matrix to infer a dated phylogeny. Adding data did not always improve phylogenetic resolution which was impacted by non-informative variation in chloroplast photosynthesis related genes as well as by conflicting chloroplast and nuclear signals. This provides evidence for both selection and introgressive hybridization and/or incomplete lineage sorting during an ancient rapid divergence that will require multiple independent, informative, and neutral gene trees to resolve.
DOI: 10.25413/sun.31238719.v1
title: Gene tree discordance, rapid diversification and convergence impact phylogenetic inference in Zygophylloideae

description: These files contain ion- semi-conductor sequence data and contiguous sequence read assemblies. The data were generated from seven plant species, namely Tribulus terrestris, Augea capensis, Fagonia rangei, Roepera foetida, Teraena turbinata (nom. ined.), Zygophytllum stapffii and Zygophyllum fabago.Article Abstract:<br>The Zygophyllaceae subfamily Zygophylloideae includes seven genera and around 180 species distributed worldwide particularly in arid areas where they show various adaptations to drought including C4 and CAM photosynthesis. Phylogenetic relationships of Zygophylloideae have been analysed in several studies using Sanger sequenced markers, but deeper relationships between clades have remained recalcitrant. Here, we use ion semi-conductor sequencing of chloroplast and nuclear ribosomal regions to analyse these relationships and assess why they have proved so challenging to resolve. We analyse new data for 39 chloroplast genes and nuclear ribosomal 18S, 5.8S, and 26S gene and internal transcribed spacers for key species of Zygophyllum sensu stricto, Roepera, Tetraena, Fagonia, Zygophyllum stapffii and monotypic Augea capensis; and Tribulus of the subfamily Tribuloideae as outgroup, compared this to published chloroplast genomes, summarising phylogenetic results separately from non-coding introns and intergenic spacers, photosynthetic genes and non-photosynthetic genes. We combined this data with sequences of three highly variable noncoding chloroplast regions and ITS used in previous studies of greater numbers of taxa and assessed the effect on phylogenetic inference. We used a chloroplast sequence matrix to infer a dated phylogeny. Adding data did not always improve phylogenetic resolution which was impacted by non-informative variation in chloroplast photosynthesis related genes as well as by conflicting chloroplast and nuclear signals. This provides evidence for both selection and introgressive hybridization and/or incomplete lineage sorting during an ancient rapid divergence that will require multiple independent, informative, and neutral gene trees to resolve.
DOI: 10.15468/dl.hk99vj
title: Occurrence Download

description: A dataset containing 37083434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cursorius cursor, Himantopus himantopus, Jacana jacana, Limosa limosa, Scolopax minor, Ciconia ciconia, Chalcophaps indica, Columba livia, Geopelia placida, Geopelia striata, Leucosarcia melanoleuca, Nesoenas picturatus, Oena capensis, Patagioenas squamosa, Spilopelia chinensis, Spilopelia senegalensis, Streptopelia capicola, Streptopelia decaocto, Streptopelia tranquebarica)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37083434 records from 6478 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016110-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwfc29
title: Occurrence Download

description: A dataset containing 410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Lasiodora parahybana"
 ]
}

 The dataset includes 410 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008282-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10572147
title: 3D ED/MicroED data of zeolite STW FIB-milled lamellae

description: 3D ED/MicroED data of zeolite STW lamellae FIB-milled to different thicknesses: 100 nm, 130 nm, 210 nm and 350 nm.

3D ED data was acquired using a Themis Z microscope (Thermo Fischer Scientific) operating at 300 keV, equipped with a Timepix Cheetah (Amsterdam Scientific Instrument) hybrid pixel detector. Data was collected at identical crystallographic orientation for each thickness, using a tilt range from -45 to 45° and data collection speed of 0.3°/s. Each frame had an exposure time of 0.01s, resulting in an oscillation range of 0.03° per frame.
DOI: 10.5281/zenodo.17484538
title: 3D ED/MicroED data of zeolite STW FIB-milled lamellae

description: 3D ED/MicroED data of zeolite STW lamellae FIB-milled to different thicknesses: 100 nm, 130 nm, 210 nm and 350 nm.

3D ED data was acquired using a Themis Z microscope (Thermo Fischer Scientific) operating at 300 keV, equipped with a Timepix Cheetah (Amsterdam Scientific Instrument) hybrid pixel detector. Data was collected at identical crystallographic orientation for each thickness, using a tilt range from -45 to 45° and data collection speed of 0.3°/s. Each frame had an exposure time of 0.01s, resulting in an oscillation range of 0.03° per frame.
DOI: 10.15156/bio/sh0158668.10fu
title: SH0158668.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0158669.10fu
title: SH0158669.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.15870973
title: DYNAMIC RW Dataset

description: De-identified dataset from the DYNAMIC Rwanda study that evaluated the impact of the ePOCT+ clinical decision support algorithm on antibiotic prescription compared to routine care. It was used to conduct two primary analyses: intervention-control comparison using a non-cluster-randomized controlled trial design, and before-after comparison enabled by the conversion of control health facilities to intervention partway through the study. The study was conducted in Rusizi and Nyamasheke districts of Rwanda between December 2021 and April 2023.
DOI: 10.15468/dl.tg5gjd
title: Occurrence Download

description: A dataset containing 719 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Schinus fasciculata"
 ]
}

 The dataset includes 719 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000941-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0158670.10fu
title: SH0158670.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.