cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5258121
title: Tunable Resistive Pulse Sensing data of "The impact of storage on extracellular vesicles: a systematic study" experiments

description: Raw data of Tunable Resistive Pulse Sensing (TRPS) of "The impact of storage on extracellular vesicles: a systematic study" experiments
DOI: 10.5281/zenodo.5258120
title: Tunable Resistive Pulse Sensing data of "The impact of storage on extracellular vesicles: a systematic study" experiments

description: Raw data of Tunable Resistive Pulse Sensing (TRPS) of "The impact of storage on extracellular vesicles: a systematic study" experiments
DOI: 10.6073/pasta/97e478b38a0e114c58e370e4cefa6f47
title: Pinon-Juniper (Core Site) Quadrat Data for the Net Primary Production Study at the Sevilleta National Wildlife Refuge, New Mexico

description: This dataset contains pinon-juniper woodland quadrat data and is part of a long-term study at the Sevilleta LTER measuring net primary production (NPP) across four distinct ecosystems: creosote-dominant shrubland (Site C, est. winter 1999), black grama-dominant grassland (Site G, est. winter 1999), blue grama-dominant grassland (Site B, est. winter 2002), and pinon-juniper woodland (Site P, est. winter 2003). Net primary production is a fundamental ecological variable that quantifies rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. Above-ground net primary production is the change in plant biomass, represented by stems, flowers, fruit and and foliage, over time and incorporates growth as well as loss to death and decomposition. To measure this change the vegetation variables in this dataset, including species composition and the cover and height of individuals, are sampled twice yearly (spring and fall) at permanent 1m x 1m plots within each site. A third sampling at Site C is performed in the winter. The data from these plots is used to build regressions correlating biomass and volume via weights of select harvested species obtained in SEV157, "Net Primary Productivity (NPP) Weight Data." This biomass data is included in SEV182, "Seasonal Biomass and Seasonal and Annual NPP for Core Research Sites."
DOI: 10.6073/pasta/4b6fca5328fcdfa8bc644a3d6d9727f7
title: Extreme Drought in Grassland Ecosystems (EDGE) Net Primary Production Quadrat Data at the Sevilleta National Wildlife Refuge, New Mexico

description: EDGE is located at six grassland sites that encompass a range of ecosystems in the Central US - from desert grasslands to short-, mixed-, and tallgrass prairie. We envision EDGE as a research platform that will not only advance our understanding of patterns and mechanisms of ecosystem sensitivity to climate change, but also will benefit the broader scientific community. Identical infrastructure for manipulating growing season precipitation will be deployed at all sites. Within the relatively large treatment plots (36 m2), we will measure with comparable methods, a broad spectrum of ecological responses particularly related to the interaction between carbon fluxes (NPP, soil respiration) and species response traits, as well as environmental parameters that are critical for the integrated experiment-modeling framework, as well as for site-based analyses. By designing EDGE as a research platform open to the broader scientific community, with subplots in all replicates (n = 180 plots) set-aside for additional studies, and by making data available to the broader ecological community EDGE will have value beyond what we envision here.
DOI: 10.5517/ccdc.csd.cc25kf17
title: CCDC 2012738: Experimental Crystal Structure Determination

description: Related Article: Liang Wu, Meng Feng, Yuxiao Zhang, Yu Cao, Dongmei Wang, Chunxia Li|2021|Inorg.Chem.|60|12151|doi:10.1021/acs.inorgchem.1c01370
DOI: 10.5517/ccdc.csd.cc27ycm6
title: CCDC 2083808: Experimental Crystal Structure Determination

description: Related Article: Foqing Ma, Chenxi He, Eryu Wang, Rongbiao Tong|2021|Org.Lett.|23|6583|doi:10.1021/acs.orglett.1c02435
DOI: 10.5281/zenodo.5172791
title: Satellite Datasets used for MIRA Workflows

description: CANGA Remapping Intercomparison Satellite Data Set Included is the data used to generate sampling fields. Included is the script for generating spatial power spectra and fitting later used in reconstruction over any unstructured spherical grid. This data set is included for reproducibility of results provided in a journal article submission. REQUIRES: http://code.google.com/p/netcdf4-python/ Python NetCDF IO modules: "pip install netcdf4" https://shtools.oca.eu/shtools/ Python spherical harmonic tools package: "pip install pyshtools" Numpy Scipy (KDTree search) https://plot.ly/python/ Plotly (Fancy, web-based plotting)
DOI: 10.6073/pasta/fc428debe11985ee20ae2205562b73bc
title: Satellite-based remote sensing of water clarity in the shallow coastal lagoons of Virginia

description: Satellite data and water clarity estimates from 157 randomly sampled sites in the Virginia Coast Reserve, 2019-2020. Satellite data are from Landsat-8 and Sentinel-2 and processed/atmospherically-corrected using NASA SeaDAS. The Virginia Coast Reserve is a coastal lagoon system located in Virginia, USA, near the southern tip of the Delmarva Peninsula. Due to low nitrogen inputs and frequent exchange with the Atlantic Ocean via inlets between barrier islands, water quality is high relative to many other coastal bays in the United States and worldwide. Table 2: In situ Secchi depths collected by the Virginia Coast Reserve Long Term Ecological Research project (VCR LTER), matched with satellite (Landsat-8/Sentinel-2) Secchi depth estimates from 2013-2020. Satellite overpasses occurred +/- 0-8 days within in situ sampling. Valid remote sensing reflectance values (Rrs) from NASA SeaDAS (not masked by quality flags) were recovered at 7 of 17 in situ sampling sites: 4 ocean inlet sites, 1 lagoon site, and 2 mainland tidal creek sites. Therefore, there are 7 in situ sites available for comparison with satellite estimates. Table 3: Landsat-8 data from all available imagery, 2013-2020. Table 4: Sentinel-2 data from all images occurring within +/- 0-8 days of in situ sampling, 2013-2020. Landsat8.zip: Landsat-8 Level-2 images (NetCDF files), atmospherically-corrected and processed with NASA SeaDAS. See methods and protocols for more information. Sentinel2.zip: Sentinel-2 Level-2 images (NetCDF files), atmospherically-corrected and processed with NASA SeaDAS. See methods and protocols for more information. Coastal-OC-Remote-Sensing.zip Matlab code and supporting files used in data processing. Downloaded from GitHub 2021-08-16.
DOI: 10.5281/zenodo.5260017
title: Dataset for Paper: Evolution and differentiation of the cybersecurity communities in three social Q&A sites: a mixed-methods analysis

description: The dataset of Stack Overflow from 2011-2020, Security Stack Exchange from 2011-2020, and three cybersecurity-related subreddits from 2015-2020. For more details, please see Readme.txt. If you have questions or want to discuss any research-related topics, contact me via: mtiwu@ucdavis.edu
DOI: 10.5281/zenodo.5260016
title: Dataset for Paper: Evolution and differentiation of the cybersecurity communities in three social Q&A sites: a mixed-methods analysis

description: The dataset of Stack Overflow from 2011-2020, Security Stack Exchange from 2011-2020, and three cybersecurity-related subreddits from 2015-2020. For more details, please see Readme.txt. If you have questions or want to discuss any research-related topics, contact me via: mtiwu@ucdavis.edu
DOI: 10.6084/m9.figshare.16441707
title: Data set

description: You will need the "Spectrometer_V7-1" software o notepad to open this files.<br><br>The sampling was carried out in spring 2019 with an optical spectrometer, to measure the fractions of PM10, MP2.5, PM1 and the number and the surface of the particles.Sampling was performed by a GRIMM spectrometer, Mini-LAS 11-E model, located at 1.75 m above ground level according to the protocol for the exposure of the population to urban pollution. A time resolution of 1 minute was used, for two periods of 30 minutes to measure the fractions of PM10, PM2.5, and PM1 during one period, and the surface distribution and the number of particles during the other. The spectrometer has a laser diode with a wavelength in the visible range of 660nm. The intensity of the laser beam can be modulated, allowing it to detect particles between 0.25μm and 32μm and classify into 31 channels within the range.
DOI: 10.6084/m9.figshare.11597907
title: MOESM5 of Differential expression of microRNAs in tomato leaves treated with different light qualities

description: Additional file 5: Table S5. GO enrichment analysis.
DOI: 10.6084/m9.figshare.11597907.v1
title: MOESM5 of Differential expression of microRNAs in tomato leaves treated with different light qualities

description: Additional file 5: Table S5. GO enrichment analysis.
DOI: 10.6084/m9.figshare.11597913
title: MOESM4 of Deep neural networks for human microRNA precursor detection

description: Additional file 4. Pseudo hairpins with generated features
DOI: 10.6084/m9.figshare.11597913.v1
title: MOESM4 of Deep neural networks for human microRNA precursor detection

description: Additional file 4. Pseudo hairpins with generated features
DOI: 10.6084/m9.figshare.22604690.v1
title: Additional file 5 of Expression of EMT-related genes in lymph node metastasis in endometrial cancer: a TCGA-based study

description: Additional file 5: Supplementary table 4. Top 5 hub genes calculated by each method in PPI analysis.
DOI: 10.6084/m9.figshare.11597919
title: MOESM6 of Differential expression of microRNAs in tomato leaves treated with different light qualities

description: Additional file 6: Table S6. KEGG analysis of target genes.
DOI: 10.6084/m9.figshare.22604684
title: Additional file 3 of Expression of EMT-related genes in lymph node metastasis in endometrial cancer: a TCGA-based study

description: Additional file 3: Supplementary table 2. Gene Ontology (GO) analyses were carried out by 'enrichplot' package.
DOI: 10.6084/m9.figshare.11597919.v1
title: MOESM6 of Differential expression of microRNAs in tomato leaves treated with different light qualities

description: Additional file 6: Table S6. KEGG analysis of target genes.
DOI: 10.6084/m9.figshare.22604681.v1
title: Additional file 2 of Expression of EMT-related genes in lymph node metastasis in endometrial cancer: a TCGA-based study

description: Additional file 2: Supplementary table 1. DEERGs between LN positive and negative cases were screeened out by 'limma' package.
DOI: 10.6084/m9.figshare.22604693
title: Additional file 6 of Expression of EMT-related genes in lymph node metastasis in endometrial cancer: a TCGA-based study

description: Additional file 6: Supplementary table 5. DEERGs and their predictive value in LNM in cases with molecular subtypes.
DOI: 10.6084/m9.figshare.22604693.v1
title: Additional file 6 of Expression of EMT-related genes in lymph node metastasis in endometrial cancer: a TCGA-based study

description: Additional file 6: Supplementary table 5. DEERGs and their predictive value in LNM in cases with molecular subtypes.
DOI: 10.6084/m9.figshare.22604699.v1
title: Additional file 8 of Expression of EMT-related genes in lymph node metastasis in endometrial cancer: a TCGA-based study

description: Additional file 8: Supplementary table 7. DEERGs and their predictive value in LNM when combined with clinicopathological parameters.
DOI: 10.6084/m9.figshare.23650175.v1
title: Additional file 5 of Astrocyte-derived SerpinA3N promotes neuroinflammation and epileptic seizures by activating the NF-κB signaling pathway in mice with temporal lobe epilepsy

description: Additional file 5: Table S4. Primer sequences used for qPCR.
DOI: 10.6084/m9.figshare.24180879
title: Additional file 4 of Disruption of the Novel Small Protein RBR7 Leads to Enhanced Plant Resistance to Blast Disease

description: Additional file 4. Genes in the 400-kb candidate region.
DOI: 10.6084/m9.figshare.24180879.v1
title: Additional file 4 of Disruption of the Novel Small Protein RBR7 Leads to Enhanced Plant Resistance to Blast Disease

description: Additional file 4. Genes in the 400-kb candidate region.
DOI: 10.6084/m9.figshare.24180885
title: Additional file 5 of Disruption of the Novel Small Protein RBR7 Leads to Enhanced Plant Resistance to Blast Disease

description: Additional file 5. Mutated allele frequency of rbr7 and Kit phenotype pool from F2 population in the candidate region.
DOI: 10.6084/m9.figshare.24180885.v1
title: Additional file 5 of Disruption of the Novel Small Protein RBR7 Leads to Enhanced Plant Resistance to Blast Disease

description: Additional file 5. Mutated allele frequency of rbr7 and Kit phenotype pool from F2 population in the candidate region.
DOI: 10.6084/m9.figshare.22604662.v1
title: Additional file 10 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 10: Table S7. Expression of genes involved in Ca2+ signaling in common vetch under cold acclimation conditions
DOI: 10.6084/m9.figshare.22604671.v1
title: Additional file 13 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 13: Table S10. Expression of DEGs related to plant circadian rhythms in common vetch under cold acclimation conditions
DOI: 10.6084/m9.figshare.22604671
title: Additional file 13 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 13: Table S10. Expression of DEGs related to plant circadian rhythms in common vetch under cold acclimation conditions
DOI: 10.6084/m9.figshare.22604668
title: Additional file 12 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 12: Table S9. Expression of DEGs related to the MAP kinase cascade in common vetch under cold acclimation conditions
DOI: 10.6084/m9.figshare.22604644
title: Additional file 4 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 4: Table S1. Days to 50% flowering, maturity, stem thickness, crop height, dry matter and seed yield of different cultivars
DOI: 10.6084/m9.figshare.22604647.v1
title: Additional file 5 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 5: Table S2. Primers used for the qRT–PCR analysis
DOI: 10.6084/m9.figshare.22604650.v1
title: Additional file 6 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 6: Table S3. Primers used to verify the expression of cold tolerance-related genes
DOI: 10.6084/m9.figshare.22604656.v1
title: Additional file 8 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 8: Table S5. Expression of genes related to hormonal signaling in common vetch under cold acclimation conditions
DOI: 10.6084/m9.figshare.22604653
title: Additional file 7 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 7: Table S4. Summary of Illumina sequencing data and assembled results
DOI: 10.6084/m9.figshare.22604665
title: Additional file 11 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 11: Table S8. Expression of genes related to redox processes in common vetch under cold acclimation conditions
DOI: 10.6084/m9.figshare.22604668.v1
title: Additional file 12 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 12: Table S9. Expression of DEGs related to the MAP kinase cascade in common vetch under cold acclimation conditions
DOI: 10.6084/m9.figshare.22604662
title: Additional file 10 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 10: Table S7. Expression of genes involved in Ca2+ signaling in common vetch under cold acclimation conditions
DOI: 10.6084/m9.figshare.22604665.v1
title: Additional file 11 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 11: Table S8. Expression of genes related to redox processes in common vetch under cold acclimation conditions
DOI: 10.25387/g3.12119022.v1
title: Supplemental Material for Saini et al., 2020

description: supplemental data
DOI: 10.6084/m9.figshare.22604674.v1
title: Additional file 14 of A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.)

description: Additional file 14: Table S11. Expression of genes related to TFs in common vetch under cold acclimation conditions
DOI: 10.6084/m9.figshare.11598009
title: MOESM2 of The proteome of IVF-induced aberrant embryo-maternal crosstalk by implantation stage in ewes

description: Additional file 2: Table S1. The protein quantification values for all datasets produced.
DOI: 10.6084/m9.figshare.11598009.v1
title: MOESM2 of The proteome of IVF-induced aberrant embryo-maternal crosstalk by implantation stage in ewes

description: Additional file 2: Table S1. The protein quantification values for all datasets produced.
DOI: 10.6084/m9.figshare.11598015
title: MOESM3 of The proteome of IVF-induced aberrant embryo-maternal crosstalk by implantation stage in ewes

description: Additional file 3: Table S2. Differentially expressed proteins (DEPs) between the IVF and IVO in conceptuses, endometrial C areas, and IC areas.
DOI: 10.6084/m9.figshare.11598015.v1
title: MOESM3 of The proteome of IVF-induced aberrant embryo-maternal crosstalk by implantation stage in ewes

description: Additional file 3: Table S2. Differentially expressed proteins (DEPs) between the IVF and IVO in conceptuses, endometrial C areas, and IC areas.
DOI: 10.6084/m9.figshare.14216210
title: A new Late Cretaceous leaf mine <i>Leucopteropsa spiralae</i> gen. et sp. nov. (Lepidoptera: Lyonetiidae) represents the first confirmed fossil evidence of the Cemiostominae

description: A new fossil leaf mine ichnogenus and species, <i>Leucopteropsa spiralae</i> gen. et sp. nov. (Lepidoptera: Lyonetiidae), from the Upper Cretaceous Kaiparowits Formation (Campanian age, <i>c.</i> 76.6 to 74.5 Ma) in Utah, USA, is the earliest record (75.6 ± 0.18 Ma) and only fossil evidence of a lyonetiid-like leaf-mining moth, as well as one of the oldest known fossils within the Yponomeutoidea-Gracillarioidea clade. The blotch-style mine consists of a central oviposition, or egg laying, site with a spiral trail packed with faecal pellets that concentrically spirals outwards. The trail increases in width from oviposition site to terminus, the trajectory of the trail does not cross itself, and there is no apparent pupation chamber present. The morphology of the fossil mine is reliably associated with Cemiostominae and is most similar to mines produced by extant members of the genus <i>Leucoptera</i>, such as the mountain ash bent-wing moth, <i>Leucoptera malifoliella</i>, and the laburnum leaf miner <i>L. laburnella</i>. The leaf-mining moth responsible for <i>L. spiralae</i> may be an early member of the genus <i>Leucoptera</i> or other Cemiostominae genera, and the new ichnogenus <i>Leucopteropsa</i> is erected because the morphology, and therefore the taxonomy, of the moth specifically responsible for <i>L. spiralae</i> mines was not preserved in association with the leaf mine. Despite the phylogenetic analysis of 15 lyonetiids undertaken in this study and the need for further phylogenetic work for the Lepidoptera, particularly the placement of the family Lyonetiidae and the subfamily Cemiostominae within the larger Yponomeutoidea-Gracillarioidea phylogeny, this fossil provides an important Late Cretaceous (∼76 Ma) calibration point for lepidopteran phylogeny and serves as an indicator for the antiquity of the most diverse lepidopteran group, Ditrysia. Because lepidopteran body fossils are extremely rare, owing to their small and lightly sclerotized bodies, this discovery also underscores the importance of ichnofossils in the lepidopteran fossil record. http://zoobank.org/urn:lsid:zoobank.org:pub:52B20B15-5C1A-4916-9096-A490DFED7D1C
DOI: 10.6084/m9.figshare.22604696
title: Additional file 7 of Expression of EMT-related genes in lymph node metastasis in endometrial cancer: a TCGA-based study

description: Additional file 7: Supplementary table 6. DEERGs and their predictive value between LN positive and negative cases.
DOI: 10.25387/g3.12119022
title: Supplemental Material for Saini et al., 2020

description: supplemental data
DOI: 10.6084/m9.figshare.22604681
title: Additional file 2 of Expression of EMT-related genes in lymph node metastasis in endometrial cancer: a TCGA-based study

description: Additional file 2: Supplementary table 1. DEERGs between LN positive and negative cases were screeened out by 'limma' package.
DOI: 10.34740/kaggle/dsv/3748118
title: Dutch News Articles
DOI: 10.15151/esrf-es-781088637
title: The Iberian cryoEM community BAG

description: The Iberian cryoEM BAG is a large consortium (&gt; 30 groups) composed of Portuguese and Spanish groups working in biologically relevant problems including disease-related metabolic enzymes, antibiotic resistance, DNA replication and DNA maintenance, protein synthesis, virus structure and mechanisms, and macromolecular complexes involved in the control of key cellular processes like protein folding and degradation.
DOI: 10.5281/zenodo.6614580
title: Human Long Bone Dataset for csg-toolkit

description: The present dataset is provided for testing and demonstration purposes for the `csg-toolkit`, a GNU Octave package based on the "long-bone-diaphyseal-CSG-Toolkit". It consists of eight 3D triangular mesh bone models of bilateral bones <em>(humerus, ulna, femur, and tibia)</em> of the lower and upper limbs. These bones are part of the Athens modern reference skeletal collection and they have been digitized by means of 3D photogrammetry with an accuracy of 0.02mm. For reference, they belong to the same individual, a Greek male, 26 years old.
DOI: 10.5281/zenodo.6614647
title: Human Long Bone Dataset for csg-toolkit

description: The present dataset is provided for testing and demonstration purposes for the `csg-toolkit`, a GNU Octave package based on the "long-bone-diaphyseal-CSG-Toolkit". It consists of eight 3D triangular mesh bone models of bilateral bones <em>(humerus, ulna, femur, and tibia)</em> of the lower and upper limbs. These bones are part of the Athens modern reference skeletal collection and they have been digitized by means of 3D photogrammetry with an accuracy of 0.02mm. For reference, they belong to the same individual, a Greek male, 26 years old.