cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.t0027/1
title: COMosqDroughtData

description: Data were collected from the field. The species column indicates whether the mosquitoes were Culex pipiens (PIP) or Culex tarsalis (TAR). Prevalence gives the maximum likelihood prevalence of West Nile virus in mosquitoes of that species in that year for all collections from June through August. SEprev gives the standard error of the prevalence from June through August. The PDSI column gives the average value of the Palmer Drought Severity Index from May through August.  The Abun column gives the total number of mosquitoes collected from June through August, and SEAbun gives the standard error of the number of mosquitoes across counties.
DOI: 10.5061/dryad.t0027/2
title: COMosqImmunityData

description: These are field collected data.  The vector index is the square root of the maximum likelihood prevalence in a given county and week multiplied by the total abundance of Culex pipiens and Culex tarsalis mosquitoes in a given county and week. The human cases data is the square root of the number of human WNV cases in a county and week.  The Year1 column indicates whether the data were collected in 2003 (1) or not (0).
DOI: 10.5061/dryad.t6m9m/1
title: Controlled environment and field experimental data

description: Data file containing all data reported in the paper including plant, soil and insect data from controlled environment and field experiments. First spreadsheet in the data file contains a key to explain all abbreviations used throughout the file.
DOI: 10.5061/dryad.vd127/2
title: GBS Final Filtered VCF
DOI: 10.5061/dryad.vd127/3
title: mtDNA Arlequin Input File

description: Standard Arlequin including the haplotype numbers and their associated genbank accessions.Also includes the pairwise geographic distances between sampling localities for use in the mantel test.
DOI: 10.5061/dryad.vn77k/1
title: Polygamy slows diversification in shorebirds_rawdata

description: This file contains all of the raw microsatellite data for ten species of plover. Kittlitz's plover and white-fronted plover are divided into two datasets which represent 1) mainland African populations and 2) Madagascan populations. Details of the microsatellite markers and PCR conditions can be found in the paper. Killdeer plover has one marker identified as having a high estimate of null alleles, this is marked in grey shading.
DOI: 10.5061/dryad.01f10/5
title: Fungal OTU sequences

description: DNA sequence of the most abundant sequence in each OTU in fasta format (284 OTUs).
DOI: 10.5061/dryad.09d0k/1
title: Processed and Reconstructed SBEM Imaging Data for Podocytes

description: This data package contains the segmented binary images (Level 1) and the Gaussian-smoothened reconstructed volumes (Level 2) of individual rat kidney podocytes that were used to create our dynamical models. Images have 11 nm/pixel in-plane (XY)-resolution and 210 nm out-of-plane (Z)-resolution. Reconstructed volumes all use a single coordinate system. Technical details of segmentation and reconstruction are provided in the Supplementary Information file associated with the manuscript.
DOI: 10.5061/dryad.0f8j8/1
title: Flower size data

description: Flower size data
DOI: 10.5061/dryad.0f8j8/2
title: style length correlates

description: Data on style length, abiotic measures, and petal size for the six study populations.
DOI: 10.5061/dryad.0f8j8/3
title: Data on reproductive isolation

description: Data for each female from the six populations for the Reproductive Isolation measure, number of seeds produced from base pollinations, and whether the male was from the same or a different population as the individual female.
DOI: 10.5061/dryad.0f8j8/4
title: pollen grain style length correlation

description: Data on pollen grain size and style length for individuals from the six study populations.
DOI: 10.5061/dryad.0f8j8/6
title: location of ovules fertilized

description: Data on the number of ovules fertilized when the male was from the same population as the female or from separate small-flowered populations.
DOI: 10.5061/dryad.214qd/1
title: Extensive Norfolk-scale bush-cricket data

description: Extensive Norfolk-scale data collected during the evening and night through the Norfolk Bat Survey (www.batsurvey.org) for Orthoptera between 2013-2015. Rows relate to the species present at the individual recording (*.wav) level.
DOI: 10.5061/dryad.214qd/2
title: Intensive site level data

description: Intensive site-level data collected over the day and night for Orthoptera in 2015. Rows relate to the species present at the individual recording (*.wav) level.
DOI: 10.5061/dryad.378bk/1
title: tseng-2017-jme-dryad

description: Raw data for this manuscript.
DOI: 10.5061/dryad.4mp6h/1
title: HumanizedMotorFunction

description: Motor function scores of wild-type and Thy1-aSyn mice colonized with fecal microbes derived from Parkinson's disease patients or matched healthy controls.
DOI: 10.5061/dryad.4mp6h/2
title: MouseTreatmentMotorFunction

description: Motor function scores of wild-type and Thy1-aSyn mice, under differing microbial colonization status. Conventionally colonized, germ-free, antibiotic-treated, recolonized germ-free, and short-chain fatty acid treated animals.
DOI: 10.5061/dryad.4mp6h/3
title: SynucleinandInflammation

description: Expression and production of alpha-synuclein and proinflammatory cytokines, and microglia diameter and cytokine expression in the brain of wild-type and Thy1-aSyn mice, under specific pathogen free and germ-free conditions.
DOI: 10.5061/dryad.4pm73/2
title: Supplementary Data_20170324
DOI: 10.5061/dryad.50603/1
title: Raw Parasite Infection Data

description: This comma-separated .csv file contains infection data for individual birds. Included are the bird species name, sampling location, infection status and parasite lineage identification.
DOI: 10.5061/dryad.50603/2
title: Avian host habitat niche traits

description: This comma-separated .csv file contains avian species distribution data, feeding preferences, forest strata preferences and habitat breadth indices.
DOI: 10.5061/dryad.50603/3
title: Analysis R code and functions

description: This .doc file contains example R code and annotated functions necessary to carry out analyses described in the manuscript.
DOI: 10.5061/dryad.5dk62/7
title: Cushman14Oct16Figure7Leafy2int2dAlignment 2

description: Trimmed DNA sequence alignment of Leafy2int2d region.
DOI: 10.5061/dryad.5dk62/8
title: Cushman14Oct16Figure8Leafy2int2iAlignment 2

description: Trimmed DNA sequence alignment of Leafy2int2i region.
DOI: 10.5061/dryad.5j54t/1
title: Crude Data for statistical figures
DOI: 10.5061/dryad.8kk06/1
title: cr237_dryad.fam

description: Plink binary format fam file for 237 Labrador retrievers phenotyped for ACL rupture. 1= unaffected, 2 = affected
DOI: 10.5061/dryad.d141n/1
title: Williams_etal-TDF_Supplementary_Information

description: Map of study site; species lists by site with importance measure values (density, frequency and basal area information); Kruskal-Wallis test results for significance between shared and unshared species by importance measure.
DOI: 10.5061/dryad.f0g32/1
title: materials

description: This zipped file consists of four folders. The first folder forcemaps contains all the trajectory data as well as functions used to calculate the forcemaps. The second folder models contains code used to visualize the decision boundaries as predicted from theory. The folder simulation contains materials needed to reproduce all the numerical simulations of schooling behavior. The folder tracefitters has all the code needed to fit velocity traces.
DOI: 10.5061/dryad.f77p7/1
title: Plot characteristics for understorey vegetation plots in Borneo

description: This csv file contains the full database of characteristics for each of 180 vegetation plots including logging metrics, environmental variables as well as taxonomic, functional and phylogenetic diversity indices for understorey plants in Borneo.
DOI: 10.5061/dryad.f77p7/2
title: Species trait data for understorey plant species in Borneo

description: This csv file contains the complete list of species (691) sampled across 180 vegetation plots (2 x 2m) located at the Stability of Altered Forest Ecosystems (SAFE) project in Sabah, Malaysia, including their allocation to a range of plant functional traits as well as a distinction between native or exotic species origin.
DOI: 10.5061/dryad.f77p7/3
title: Matrix of biomass values for 691 species in 180 understorey vegetation plots in Borneo

description: This csv file contains a matrix of biomass values for 691 plant taxa sampled across 180 vegetation plots (2 x 2m) located at the Stability of Altered Forest Ecosystems (SAFE) project in Sabah, Malaysia.
DOI: 10.5061/dryad.h9942/1
title: The assembled genomic scaffolds of Bathymodiolus platifrons
DOI: 10.5061/dryad.h9942/2
title: The assembled genomic scaffolds of Modiolus philippinarum
DOI: 10.5061/dryad.m466p/1
title: Rendon et al. - FE - Seasonal phenotypes and aggression data

description: Tab 1 - Reproductive physiology, estradiol concentrations, aggression data; Tab 2 - neural estrogen receptor alpha counts
DOI: 10.5061/dryad.mn338/10
title: 18S rRNA Piroplasmida in FASTA format

description: Nucleotide alignment of 18s rRNA sequences from Piroplasmida including a sequences that was extraceted from the platypus genome. The alignmnet is based on data from Paparini et al. (2015) and was processed by Gblocks.
DOI: 10.5061/dryad.mn338/5
title: dataset 2 single genes

description: Fasta files containing the single gene amino acid alignments of dataset 2 prior to processing by Gblocks
DOI: 10.5061/dryad.mn338/6
title: dataset 2 single genes after gblocks

description: Fasta files containing the single gene amino acid alignments of dataset 2 after processing by Gblocks.
DOI: 10.5061/dryad.mn338/7
title: dataset 1 superalignment in FASTA format

description: Concatenated superalignment of all 1420 single gene amino acid alignments of dataset 1 after processing by Gblocks.
DOI: 10.5061/dryad.mn338/8
title: dataset 2 superalignment in FASTA format

description: Concatenated superalignment of all 301 single gene amino acid alignments of dataset 2 after processing by Gblocks.
DOI: 10.5061/dryad.mn338/9
title: mitochondrial sequences from gorilla Plasmodium in FASTA format

description: Nucleotide alignment of mitochondrial Plasmodium sequences including two sequences that were extraceted from the gorilla genome. The alignment is based on data from Liu et al. (2010) and only contains sequences from Clades G1 and C1.
DOI: 10.5061/dryad.p9j1n/1
title: Ptychomya Neuquén

description: 132 specimens of Ptychomya from the Agrio Formation Lower Valanginian to lowest Barremian, Neuquén Basin, west-central Argentina
DOI: 10.5061/dryad.q5tm5/1
title: Complete RAD dataset in phylip format (zipped).

description: Complete concatenated phylogenetic dataset ( min. 4 individuals per locus) in phylip format. Clustered via PyRAD at 90% similarity within and among samples.
DOI: 10.5061/dryad.q5tm5/2
title: Zipped ".loci" file.

description: Locus-delimited dataset (".loci)  output from PyRAD for entire RAD dataset.
DOI: 10.5061/dryad.q5tm5/3
title: ncsc90d6m4p3.nex

description: Complete RAD dataset (min. 4 individuals per locus) in interleaved nexus format.
DOI: 10.5061/dryad.qv14t/1
title: Manihot elongata midrib
DOI: 10.5061/dryad.qv14t/2
title: Manihot elongata leaf blade
DOI: 10.5061/dryad.qv14t/3
title: Manihot elongata petiole
DOI: 10.5061/dryad.qv14t/4
title: Manihot reniformis petiole
DOI: 10.5061/dryad.qv14t/5
title: Manihot reniformis leaf blade
DOI: 10.5061/dryad.qv14t/6
title: Manihot caerulescens leaf blade
DOI: 10.5061/dryad.r00n0/1
title: Raw for Analyses

description: Total number of individuals, biomass (kg), and energetic demand (kg3/4) for 14 baboon social groups from 1990-2014 hydrological years (Nov-Oct).  Analyses included only group-hydrological years in which the focal group was censused every calendar month during the hydrological year.  Data provided by ABRP.
DOI: 10.5061/dryad.r00n0/2
title: Raw for Figure 2

description: Percent contribution by age-sex class to group’s total number of individuals, biomass (kg), and energetic demand (kg3/4) for 14 baboon social groups from 1990-2014 hydrological years (Nov-Oct).  Analyses included only group-hydrological years in which the focal group was censused every calendar month during the hydrological year.  Data provided by ABRP.
DOI: 10.5061/dryad.s533p.2
title: Data from: Bats (Chiroptera: Noctilionoidea) challenge a recent origin of extant neotropical diversity
DOI: 10.5061/dryad.s533p.2/1.2
title: Rojas_et_al_supplementary_material

description: Descriptions of figures S1–S9. Descriptions of Tables S1, S2 and S5. Tables S3, S4, S6 and S7.
DOI: 10.5061/dryad.s533p.2/2.2
title: Rojas_et_al_Table_S1

description: Species and GenBank accession numbers for each locus analyzed.
DOI: 10.5061/dryad.s533p.2/3.2
title: Rojas_et_al_Table_S2

description: Species, GenBank accession numbers, and collection number for each sequence generated for this study. Tissue samples were obtained from collections vouchered at the American Museum of Natural History (AMNH); the Field Museum of Natural History (FMNH); the Museo Universidad San Marcos (Lima, MUSM); the Museum of Texas Tech University (TTU, listed as TK); the Museum of Vertebrate Zoology (MVZ) of the University of California at Berkeley; the National Museum of Natural History (NMNH); and the Royal Ontario Museum (ROM). Stony Brook University (SBU) samples at the Dávalos lab are identified by collector number.
DOI: 10.5061/dryad.s533p.2/4.2
title: Supplementary Figures

description: Figures S1–S9. Descriptions for the figures are contained in the file "Rojas_et_al_supplementary_material.docx"
DOI: 10.5061/dryad.s533p.2/5.2
title: Rojas_et_al_Table_S5

description: Distribution of New World Noctilionoidea in Central and North America, South America, and the Antilles. Taxa were assigned to one or more of the three biogeographic regions based on their current distribution determined using the mammal distributions compiled by the IUCN (data downloaded on October 2013), and the literature since 2008. 1 = present, 0 = absent.
DOI: 10.5061/dryad.s533p.2/6.2
title: Bayesian_majority-rule_trees

description: Bayesian majority-rule consensus tree data of noctilionoids for each independent locus. Further details are provided as comments in each NEXUS file.
DOI: 10.5061/dryad.vn77k/2
title: shorebird_subspecies

description: This file contains breeding system, breeding range size, subspecies richness and migratory behaviour information for 136 shorebird species. This is the datafile used to test the hypotheses described in the paper using a PGLS approach implemented in R.
DOI: 10.5061/dryad.01f6p/1
title: Pig1

description: MATLAB .mat file
Column 1: Left Ventricular Pressure @200Hz
Column 2: Left Ventricular Volume @200Hz
Column 3: Aortic Pressure @200Hz
Column 4: Femoral Pressure @200Hz
DOI: 10.5061/dryad.01f6p/2
title: Pig2

description: MATLAB .mat file
Column 1: Left Ventricular Pressure @200Hz
Column 2: Left Ventricular Volume @200Hz
Column 3: Aortic Pressure @200Hz
Column 4: Femoral Pressure @200Hz
DOI: 10.5061/dryad.01f6p/3
title: Pig3

description: MATLAB .mat file
Column 1: Left Ventricular Pressure @200Hz
Column 2: Left Ventricular Volume @200Hz
Column 3: Aortic Pressure @200Hz
Column 4: Femoral Pressure @200Hz
DOI: 10.5061/dryad.01f6p/4
title: Pig4

description: MATLAB .mat file
Column 1: Left Ventricular Pressure @200Hz
Column 2: Left Ventricular Volume @200Hz
Column 3: Aortic Pressure @200Hz
Column 4: Femoral Pressure @200Hz
DOI: 10.5061/dryad.01f6p/5
title: Pig5

description: MATLAB .mat file
Column 1: Left Ventricular Pressure @200Hz
Column 2: Left Ventricular Volume @200Hz
Column 3: Aortic Pressure @200Hz
Column 4: Femoral Pressure @200Hz
DOI: 10.5061/dryad.06bp2/1
title: Lithobates pipiens transcriptome

description: SQLite database of northern leopard frog transcriptome produced using Trinity and annotated using Trinotate. Can be accessed in R using the RSQLite package.
DOI: 10.5061/dryad.0f8j8/5
title: location of pollen deposition

description: Data of measurements of where pollen grains were deposited on styles in nature.
DOI: 10.5061/dryad.2h44r/1
title: Genotypes_13 markers

description: Genotypes for four city parks (CP1, CP2 and CP3), three isolated non-urban (INU1, INU2 and INU3) and three connected non-urban populations (CNU1, CNU2 and CNU3) of eastern water dragons (Intellagama lesueurii). 13 microsatellite markers are included (taken from Frere et al., 2012) in the file,  File is in the format accepted for GeneALEx.
DOI: 10.5061/dryad.2h44r/2
title: Morphology_EWD_7 pops

description: Morphological measurements taken for four city park (CP1, CP2 and CP3) and three isolated non-urban (INU1, INU2 and INU3) populations of eastern water dragons (Intellagama lesueurii). File includes location, habitat type, sex, weight, jaw width, jaw length, upper forelimb length, lower forelimb length, upper hindlimb, lower hindlimb limb, tail girth and snout-ventral length. File is in a comma delimited excel spreadsheet.
DOI: 10.5061/dryad.2jr8p/1
title: Fox et al_reviewer burden dataset

description: Responses of peer review invitees to invitations for six journals in ecology and evolution (Evolution, Functional Ecology, Journal of Animal Ecology, Journal of Applied Ecology, Journal of Ecology, and Methods in Ecology and Evolution).
DOI: 10.5061/dryad.2n6v4/1
title: rhTM open data

description: rhTM, recombinant human thrombomodulin; FDP, fibrin/fibrinogen degradation products;  FDP0, FDP value ar day 0; delta, Relative change rate from baseline = ([measurement day value − day 0 value]/day 0 value); delta FDP1, ([FDP value at day 1− day 0 value]/day 0 value); PLT, platelet; Fib, fibrinogen; PT, PTINR, prothrombin time ratio, –international normalized ratio; PTperc, PT percentage; APTT, partial thromboplastin time; ATIII, antithrombin III; TM, thrombomodulin value; SIRS, Systemic inflammatory response syndrome; SOFA, sequential organ failure assessment score; SOFA PF, SOFA respiratory score; SOFA  PL, SOFA coagulation score;  SOFA bil, SOFA hepatic dysfunction score; SOFA CV, SOFA cardiovascular system score; SOFA GCS, SOFA Glasgow Come Scale score; SOFA Cr, SOFA renal dysfunction score.
DOI: 10.5061/dryad.4gg73/1
title: Katsuhara_et_al_data_for_FuncEcol

description: All data archived here were used for GLMM analyses in Katsuhara et al. "Functional significance of petals as landing site in fungus-gnats pollinated flowers of <i>Mitella pauciflora</i> (Saxifragaceae). Data is in six worksheets.
DOI: 10.5061/dryad.6v4ks/1
title: ENM_2source

description: This file contains the ecological niche models used to generate simulated data under the colonization model for tests using iDDC
DOI: 10.5061/dryad.6v4ks/2
title: ENM for sky island isolation model

description: This is the ENM model used to generate simulation under the sky island isolation model for testing using iDDC
DOI: 10.5061/dryad.6v4ks/3
title: IBD_2source
DOI: 10.5061/dryad.6v4ks/4
title: GLM procedure for ABC
DOI: 10.5061/dryad.6v4ks/5
title: final-loc-for-maxent

description: Georeferenced localities of Melanoplus oregonensis
DOI: 10.5061/dryad.6v4ks/6
title: README

description: This readme file explains the content of the other files in this submission, which include details about the analyses with specific programs that were used.
DOI: 10.5061/dryad.76dn2/1
title: Nutrition of yearlings born to dams fed with forage only or forage and cereals in late gestation during feeding challenge

description: Horse feed unit (HFU, net energy, 1 HFU=2250kcal), horse digestible crude proteins (HDCP, g), crude fibers (g), calcium (g), phosphorus (g), digestible energy (DE, Mcal) and crude proteins (g) for each yearling between 576 and 738 days of age.
DOI: 10.5061/dryad.76dn2/2
title: Growth of foals and yearlings born to dams fed with forage only or forage and cereals in late gestation

description: Body weight (kg), withers height (cm), cannon bone width (cm) and body condition score between 6 and 24 months of age.
DOI: 10.5061/dryad.76dn2/3
title: Metabolism of yearlings born to dams fed with forage only or with forage and cereals in late gestation

description: Acute insulin response (AIRg, mU.min.L-1), insulin sensitivity (IS, x10-4 L.mU-1.min-1), disposition index (DI, x10-2), glucose effectiveness (Sg, x10-2.min-1), basal glucose (GB, mg.dL-1), basal insulin (IB, mU.L-1) and GB/IB ratio (mg.mU-1.daL) at 19 and 24 months of age.
DOI: 10.5061/dryad.76dn2/4
title: Testicular maturation of prepubescent colts born to dams fed with forage only or with forage and cereals in late gestation

description: Lumen score (LS, 1 to 4) and gene expression (AR, AMH, Cx43, Cyp19, Occludin, Bcatenin, Ncadherin, Tjp1, P450c17, 3Bhsd and STAR) at 12 months of age
DOI: 10.5061/dryad.8ff71/1
title: output_TRF_Sinv

description: The output file after running Tandem Repeat Finder (parameters: Match = 1, Mismatch = 1, Indel = 2, Probability of match = 80, Probability of indel = 5, Min score = 200, Max period = 750). The input sequences are from the draft genome of Solenopsis invicta (version H).
DOI: 10.5061/dryad.8ff71/2
title: output_TRF_Sgem

description: The output file after running Tandem Repeat Finder (parameters: Match = 1, Mismatch = 1, Indel = 2, Probability of match = 80, Probability of indel = 5, Min score = 200, Max period = 750). The input sequences are from the draft genome of Solenopsis geminata (unpublished data).
DOI: 10.5061/dryad.8ff71/3
title: Additional_file_1_monomer_sinv

description: Tandem repeat monomers extracted from the Solenopsis invicta genome using Tandem Repeat Finder.
DOI: 10.5061/dryad.8ff71/4
title: Additional_file_2_monomer_sgem

description: Tandem repeat monomers extracted from the Solenopsis geminata genome using Tandem Repeat Finder.
DOI: 10.5061/dryad.8ff71/5
title: Additional_file_3_censol_sinv_uniq_109

description: The unique set of 109bp CenSol repeat sequences in the S. invicta genome
DOI: 10.5061/dryad.8ff71/6
title: Additional_file_4_censol_sgem_uniq_109

description: The unique set of 109bp CenSol repeat sequences in the S. geminata genome
DOI: 10.5061/dryad.8kk06/2
title: cr237_dryad.bed

description: Plink binary format .bed file for 237 labrador retrievers phenotyped for ACL rupture
DOI: 10.5061/dryad.8kk06/3
title: cr237_dryad.bim

description: Plink binary format .bim file for 237 Labrador retrievers phenotyped for ACL rupture
DOI: 10.5061/dryad.b68g0/1
title: Mysticete maximum clade credibility tree

description: Time calibrated maximum clade credibility tree of fossil and extant mysticetes
DOI: 10.5061/dryad.f09rh.2
title: Data from: Using a butterflyfish genome as a general tool for RAD-Seq studies in specialized reef fish
DOI: 10.5061/dryad.f431f/1
title: Nurul-Ain et al_Reproductive phenology of tropical insectivorous bats

description: Raw data  of bats capture and insect biomass.
DOI: 10.5061/dryad.fj043/1
title: Ant Trajectories

description: Within-nest ant trajectories. Trajectories obtained from digital images, with a 10 minute interval between successive photographs.
DOI: 10.5061/dryad.fj043/2
title: Brood Locations

description: Within-nest locations of ant brood items, that is, immature ants (eggs, larvae, pupae). Coordinates correspond to the coordinates in the accompanying Ant_Trajectories.txt file. Photographs are taken every 50 photographs, as indicated by the 'brood_photo' column. These photographs correspond to the Ant_Z column in the accompanying Ant_Trajectories.txt file.
DOI: 10.5061/dryad.gs27k/1
title: Lolium SSR data genepop format

description: File containing genotype data from 12 microsatellite (SSR) loci for 412 individuals from 14 Lolium perenne ssp. multiflorum populations from California in genepop file format for easy conversion to other file formats.
DOI: 10.5061/dryad.gs27k/2
title: Lolium SSR structure format

description: File containing genotype data from 12 microsatellite (SSR) loci for 412 individuals from 14 Lolium perenne ssp. multiflorum populations from California formatted for analysis with STRUCTURE software.