cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14689253
title: Meta-analysis:Does cryopreservation uniformly affect the DNA fragmentation rate of spermatozoa of men with different states of spermatogenesis?

description: The primary data of the meta-analysis of the study on the effect of the cryopreservation method (a method of rapid cooling and vitrification) on the occurrence of DNA damage in spermatozoa of men with different stages of spermatogenesis are presented. Methods. The search was carried out in the Medline, Embase, PubMed and Google Scholar databases. The article analyzed 52 studies that were presented in 32 scientific articles. The data analyzed included sample sizes and outcome measures with mean and standard deviations. The measurement results were converted to SMD with 95% CI. Heterogeneity was assessed using the I2 statistic. Statistical analysis was performed using RevMan 5.4 (statistical method – Inverse Variance).
DOI: 10.17632/kwbwsmkbs2.1
title: Resolving neutrophils through genetic deletion of TRAM attenuate atherosclerosis pathogenesis

description: Original data for the paper of "Resolving neutrophils through genetic deletion of TRAM attenuate atherosclerosis pathogenesis"
DOI: 10.17632/842skwftfy.1
title: LINF_360022500

description: universal minicircle sequence binding protein (UMSBP2)
Leishmania infantum (strain JPCM5)
DOI: 10.17632/fvjkd5bb6p.2
title: Abordaje y tratamiento del pie diabético

description: El abordaje del pie diabético implica un proceso multidisciplinario y para su tratamiento la enzima proteolítica colagenasa demostró ser una aliada invaluable para la cicatrización de heridas, con excelente tolerancia.
DOI: 10.17632/t7tr42ztt5.1
title: Geels Murat et al STAR Protocols 2024

description: This dataset is an example to reproduce the analysis procedure described in Geels Murat et al, STAR Protocols 2024. It contains the original and the processed Imaris file for a representative F-IVM movie (internal reference: 220223 d13 D4M-N4 F3-S6f MPIVM-1_bf_M5 24h ITC XYZT3), the exported statistics Excel file, the tab-delimited file for Matlab, and the output "Analysis", "Summary" and "MSD" files. The original Matlab scripts can be found at DOI https://doi.org/10.5281/zenodo.11122613.
DOI: 10.17632/vx4gbvrt4z.1
title: Raw data for "Fission yeast Duc1 links to ER-PM contact sites and influences PM lipid composition and cytokinetic ring anchoring" part 2

description: This is part of the raw data associated with the manuscript listed in the title.
DOI: 10.17632/h3h37z4prg.1
title: Balance interpedal asymmetry in older adults

description: In this worsheet are presented data on interpedal balance asymmetries in healthy older individuals from an evaluation based on the Equidyn protocol. 
Background: Previous evidence of increased between-leg muscular strength asymmetry in older adults suggests the possibility of interlateral asymmetries of balance control in older individuals. In the current investigation, we evaluated interlateral asymmetries in older adults when performing quiet and dynamic balance tasks.
Methods: Fifty-two physically active and healthy older adults within the age range of 60 to 80 years were recruited. Participants performed balance tasks including quiet stance and cyclic sway of the free leg in the anteroposterior or mediolateral directions, with standardized amplitude and rhythm of leg movements. Trunk acceleration in the anteroposterior and mediolateral directions was measured using a smartphone attached to the upper trunk for evaluating balance stability.
Results: Analysis revealed predominance of symmetric balance when comparing the right versus left or preferred versus nonpreferred legs, regardless of whether they were performing quiet stance or dynamic balance tasks. Further examination of the data showed high between-leg correlation coefficients across all tasks.
Conclusion: Our findings indicate a low degree of lateralization in balance control among older adults. As balance requires the coordination of the entire body, we suggest that both cerebral hemispheres are involved in regulating unipedal balance when supported on either leg.
DOI: 10.17632/m26hk4ysvz.1
title: Time series weather dataset for predicting photovoltaic Energy in Portugal

description: Data were collected from the University of Évora's Verney weather station, Portugal. This dataset consists of comprehensive weather data collected from Verney weather station over four years. The dataset is stored in the primary "Verney" directory. Within this directory, there are subdirectories for each year ranging from 2020 to 2023. Each yearly folder is subdivided into further folders named "1", "10", "60", and "1440", representing the data recording intervals in minutes. Accordingly, the weather data is organized into intervals of one minute, ten minutes, one hour, and one day. The naming convention for the files reflects the recording interval and the date; for instance, one-minute interval files are named as "verney_YYYYMMDD_1.dat", such as “verney_20230101_1.dat”. The ten-minute files follow the format "verney_YYYYMMDD_10.dat", like “verney_20230101_10.dat”. Files for the sixty-minute interval are labeled "verney_YYYYMM_60.dat", e.g., “verney_202301_60.dat”, and the daily interval files are designated as "verney_YYYYMM_1440.dat", for example, "verney_202301_1440.dat". The file names clearly encode both the date and the data interval, using “YYYYMMDD” for minute and ten-minute intervals and “YYYYMM” for hourly and daily intervals, with suffixes (1, 10, 60, 1440) indicating the recording interval in minutes. This structured format facilitates the straightforward retrieval and analysis of data for research.
DOI: 10.17632/vtsrc2sfwd.1
title: Lessons for Direct Air Capture from the history of Ammonia Synthesis

description: A collection of historical data used in our article, "Lessons for Direct Air Capture from the History of Nitrogen Synthesis: High rates of deployment are possible, with strong support. This dataset is intended to provide transparency on the historical research underpinning our work. The attached Excel file includes the following sheets:
1) An overview sheet listing and describing all the subsequent sheets
2) A long list of candidate historical analogues, showing how they were eliminated from consideration as a historical analogue for direct air capture
3) A short list of candidate historical analogues, showing the data that was used to construct a time series of historical capacity for each of them. 
4) A list of nitrogen synthesis facilities built around the world from 1905 to 1930. This data was compiled from historical primary sources, and was used to create time series documenting the number of plants and total capacity in all the countries operating nitrogen synthesis industries at this time
5) A collection of time series data showing the growth of the nitrogen industry in every country on earth, compiled from various historical sources and statistical repositories
6) A data series providing a single continuous time series for synthetic ammonia production from 1913 to 1922, which is then projected into a scenario for the possible future growth of direct air capture, starting in 2024
7) An analysis of the progress of direct air capture and ammonia synthesis technologies through the technological readiness levels, based on historical sources
9) A qualitative chronology of the history of ammonia synthesis around the world, categorized by country and by the arenas of cause and effect that apply to each event. Includes citations for every event listed. This is the basis of the qualitative narrative presented in our article.
10) A list of assumptions underpinning the data in all the other sheets, as well as some miscellaneous notes
11) A bibliography documenting all the sources used in the rest of the dataset
DOI: 10.17632/98g66p2v9k.1
title: Improved Mechanistic Degradation Modes Modeling of Lithium and Sodium Plating - Preliminary Data

description: Preliminary data associated with the Battery communication entitled "Improved Mechanistic Degradation Modes Modeling of Lithium and Sodium Plating"

Metadata and instruction are included in the matfile.
DOI: 10.17632/7bd9hfxpd2.1
title: Box–Behnken design of thermo-responsive nano-liposomes loaded with a platinum(IV) anticancer complex: evaluation of cytotoxicity and apoptotic pathways in triple negative breast cancer cells

description: Herein, thermo-responsive liposomes (TLs) loaded with Asp (Asp/TLs) were produced by self-assembling DPPC, DSPE-PEG2000, and cholesterol. The preparation variables were optimized using the Box–Behnken design (BBD). The optimized Asp/TLs exhibited an average particle size of 114.05 ± 1.56 nm, PDI of 0.15 ± 0.015, zeta potential of −15.24 ± 0.65 mV, and entrapment efficiency (EE%) of 84.08 ± 2.75%. In addition, under physiological conditions, Asp/TLs showed spherical shape, outstanding stability and thermo-triggered the release of Asp at 38 °C, reaching the maximum Asp release at 40 °C. The MTT assay showed that the optimal Asp/TLs exhibited the highest cytotoxic activity upon exposure to mild hyperthermia (40 °C) against the invasive triple-negative breast cancer cell line (MDA-MB-231) when compared to other preparations. The IC50 of Asp/TLs (40 °C) was estimated at 0.9 μg mL−1, while that of free Asp (40 °C) was 3.83 μg mL−1. As such, the optimal Asp/TLs were shown to increase the cytotoxic activity of Asp by 4-fold upon exposure to mild hyperthermia. The IC50 values of Asp and Asp/TLs without exposure to 40 °C were 6.6 μg mL−1 and 186 μg mL−1, respectively. This indicated that Asp was released only when placed at 40 °C. The apoptosis assay revealed that Asp/TLs (40 °C) caused a remarkable increase in the percentage of cell population among both the late apoptosis and necrosis quartiles, as well as a significant decline in the viable cell quartile (P ≤ 0.001) when compared to Asp (40 °C). Asp/TLs (40 °C) and Asp (40 °C) could stimulate the intrinsic apoptosis pathway by upregulating the apoptotic genes Bak and Bax, while downregulating the anti-apoptotic genes, BCL-xL and BCL-2. The free Asp (40 °C) increased the gene expression of Bak and Bax by 4.4- and 5.2-folds, while reducing the expression of BCL-xL and BCL-2 by 50% and 73%, respectively. The optimal Asp TLs (40 °C) manifested more potent effects as demonstrated by the upregulation of Bak, Bax, and P53 by 5.6-, 7.2-, and 1.3-folds, as well as the downregulation of BCL-xL and BCL-2 by 70% and 85%, respectively. As such, the optimal Asp TLs (40 °C) treatment displayed the most potent cytotoxic profile and induced both apoptosis and necrosis in MDA-MB-231.
DOI: 10.15468/dl.tw7bnf
title: Occurrence Download

description: A dataset containing 316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Cairina moschata (Linnaeus, 1758))",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 316 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004408-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/t93kgh32wd.1
title: Supplemental Materials

description: Supplemental Materials - Markers of Type 2 Inflammation and Immunosenescence are Upregulated in Localized Scleroderma
DOI: 10.17632/xt3nmkm375.1
title: The acetylase activity of Cdu1 regulates bacterial exit from infected cells by protecting Chlamydia effectors from degradation

description: This data set contains unprocessed and processed western blot images, indirect fluorescence images, and quantitative data sets that were used to generate all Figures in the publication "The acetylase activity of Cdu1 protects Chlamydia effectors from degradation to regulate bacterial exit from infected cells".
DOI: 10.17632/7hhw3r9jww.1
title: Effects of Retinoic Acid on mTOR, SAMHD1 and TCF4 Expression in Macrophages

description: Monocyte-derived macrophages (MDMs) were generated from monocytes of HIV-uninfected individuals in the presence or the absence of all trans retinoic acid (ATRA). MDMs were tested by western blotting for the expression of mTOR, S6K, and SAMHD1 protein expression/phosphorylation, as well as TCF4 protein expression.

This file is linked to the manuscript entitled "Retinoic Acid Boosts HIV-1 Replication in Macrophages via CCR5/SAMHD1-Dependent and mTOR-Modulated Mechanisms" by Jonathan Dias, Petronela Ancuta et al., submitted for publication October 5th, 2023 (reprint available on www.BioRxiv.org)
DOI: 10.17632/x2xnmmkxx2.1
title: Antibiotic resistant genes from surface water

description: During this study, E. coli (60) and Klebsiella spp (40) were isolated from 40 different sites in the Bagmati River. The isolates were characterized by morphological observation and biochemical tests. The colony morphology characteristics were examined on 24 h culture on nutrient agar. The isolates were Gram-negative rod, non-spore-forming, catalase-positive, and oxidase-negative and other biochemical test. 
It was observed that all of the isolated strains of E. coli and Klebsiella spp were sensitive to imipenem and ofloxacin, cotrimoxazole (Figure 1A and 1B), whereas isolated E. coli strains, 1 strain was resistant to ceftriaxone, 2 strains to cefotaxime, ceftazidime and amikacin and 6 strains to aztreonam and ampicillin, and 5 strains to gentamycin. Similarly, 3 strains of Klebsiella spp were resistant to ceftriaxone, 12 strains to cefotaxime, 11 to ceftazidime and 4 strains to aztreonam and amikacin, 5 to ampicillin, and 10 to gentamycin. Of 100 isolated bacteria, 5% of E. coli and 30% of Klebsiella spp were ESBL producers (Figure 2). Of 15 ESBL producers, 100% of the isolated strains were sensitive to imipenem and ofloxacin (Figure 3A and 3B). However, 93.3%, 86.7%, 26.7%, and 26.7% of ESBL producers were resistant to cefotaxime, ceftazidime, ceftriaxone, and aztreonam, respectively. Additionally, among 85 non ESBL producers, all isolated strains were sensitive to imipenem, ofloxacin, cefotaxime, ceftazidime, and ceftriaxone. However, 7.1% of isolates were resistant to aztreonam.
Most common types of β-lactam resistance genes, which include blaCTX-M, blaSHV, and blaTEM, were detected, and NDM-1 and OXA-48 genes were also detected. Of 60 isolated strains of E. coli, the TEM gene was the most prevalent, followed by NDM-1 and CTX-M genes. OXA-48 gene was not detected in the isolated E. coli strains (Figure 4). Additionally, out of 40 Klebsiella spp, TEM and CTX-M genes were the most prevalent, followed by OXA-48 and NDM-1 genes. In the case of 85 non ESBL producers, TEM and CTX-M genes were the most prevalent, followed by NDM-1, SHV, and OXA-48 genes. Among 15 ESBL producers, CTX-M and TEM genes were the most prevalent, followed by SHV, OXA-48, and NDM-1 genes. 
Out of 100 isolated bacteria, the TEM gene was the most prevalent. However, the combination of CTX-M and TEM was the most predominant (97.7%), followed by SHV and TEM (5.4%). Only 2 strains were positive for TEM, SHV, and CTX-M genes. Only one strain was positive for NDM-1 and OXA-48 genes (Figure 5).
DOI: 10.17632/g4s7tppkcy.1
title: Heat and mass transfer with chemical kinetics in alcoholic fermentation of multiple sugars: lumped formulation and dimensional analysis

description: Software written in the Wolfram Mathematica language for the simulation of the alcoholic fermentation processes. Both isothermal and non-isothermal simulations codes are provided.
DOI: 10.17632/bt4ycypphk.1
title: Curation data of SARS-CoV-2 Main Protease (Mpro) PDB entries and Glide_High-throughput virtual screening (HTVS)_Flavonoids Docking Scores

description: High-throughput virtual screening, modlecular docking scores dataset of 2055 flavonoids against the SARS-CoV-2 main protease 6LU7 using Schrodinger Glide software.
Curation data of SARS-CoV-2 Main Protease (Mpro) PDB entries used for the identification and selection of docking protein.
DOI: 10.17632/n34wcksmts.1
title: SWELL: An open-access experimental dataset for arrays of wave energy conversion systems

description: Recognising the striking absence of real-world data concerning arrays of WEC systems, and its inherent value for model validation and data-based modelling purposes, we present an open-access dataset on WEC farms: SWELL (systematic wave energy converter array learning library). The generated dataset comprises an approximate total of ∼3000 variables and more than ∼10^8 datapoints, for up to 5 devices in 9 diverse WEC array layouts with different levels of interaction, and 19 carefully selected operating conditions. Four different categories of tests are considered, providing measures of key variables required for model validation and data-based modelling tasks. As such, SWELL provides a crucial resource to achieve confidence in numerical modelling, helping towards creating reliable tools for decision making in the WEC field, hence effectively supporting the pathway towards effective commercialisation of ocean wave energy.
DOI: 10.17632/9y9fzk3tbk.1
title: Physical urticaria: clinical features, pathogenesis, diagnostic work-up, and management

description: Supplementary tables and figures published alongside "Physical urticaria: clinical features, pathogenesis, diagnostic work-up, and management" by McSweeney et al.
DOI: 10.17632/9kdk9zhwcc
title: Snowmelt_Budyko

description: Raster data for watershed boundaries.
DOI: 10.17632/9kdk9zhwcc.1
title: Snowmelt_Budyko

description: Raster data for watershed boundaries.
DOI: 10.17632/fbm46jt4zb.1
title: Asian seabass, KU, Thailand

description: The repository contains two files: 1) growth data file of 390 days old Asian seabass including average daily growth (ADG), fillet weight (FW), total length, standard length, head length, body depth, body size measurements (M12 - M78), condition factor, body area measurements (FA, HA, CFA and TBA), and 2) SNP genotype file.
DOI: 10.17632/2rv6nhccht.1
title: Supplementary file 2, Complete list of expressed genes and transcripts

description: This study focuses on understanding how plants, specifically Arabidopsis thaliana, respond to two major pollutants, lead (Pb) and vanadium (V) found in oil contaminated land. While the effects of these pollutants on animals are well-studied, their impact on plants is not as clear. To fill this gap, we exposed Arabidopsis seedlings to Pb and V and analyzed the changes in gene expression using advanced sequencing and validated the data using RT PCR technique.
The results showed that exposure to Pb and V led to significant changes in gene expression in Arabidopsis seedlings compared to untreated samples. Through Gene Ontology and pathway analysis, we identified several biological processes and pathways associated with the differentially expressed genes. Overall, this investigation sheds light on the molecular mechanisms underlying the toxicity and tolerance of Arabidopsis to Pb and V, providing valuable insights into how plants respond to heavy metal stress.
DOI: 10.17632/sgwxr29hnb.1
title: LINF_060008200

description: Ribonuclease H1; Leishmania infantum (strain JPCM5)
DOI: 10.17632/765bv793cm.1
title: LINF_050014600

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/n34wcksmts.2
title: SWELL: An open-access experimental dataset for arrays of wave energy conversion systems

description: Recognising the striking absence of real-world data concerning arrays of WEC systems, and its inherent value for model validation and data-based modelling purposes, we present an open-access dataset on WEC farms: SWELL (Standardised wave energy converter array learning library). The generated dataset comprises an approximate total of ∼3000 variables and more than ∼10^8 datapoints, for up to 5 devices in 9 diverse WEC array layouts with different levels of interaction, and 19 carefully selected operating conditions. Four different categories of tests are considered, providing measures of key variables required for model validation and data-based modelling tasks. As such, SWELL provides a crucial resource to achieve confidence in numerical modelling, helping towards creating reliable tools for decision making in the WEC field, hence effectively supporting the pathway towards effective commercialisation of ocean wave energy.

For details on the database structure, please see: https://www.sciencedirect.com/science/article/abs/pii/S0960148123006924?via%3Dihub
DOI: 10.17632/n243bvg37y.1
title: Supplementary file 6, Functional analysis of significantly differentially expressed genes

description: This study focuses on understanding how plants, specifically Arabidopsis thaliana, respond to two major pollutants, lead (Pb) and vanadium (V) found in oil contaminated land. While the effects of these pollutants on animals are well-studied, their impact on plants is not as clear. To fill this gap, we exposed Arabidopsis seedlings to Pb and V and analyzed the changes in gene expression using advanced sequencing and validated the data using RT PCR technique.
The results showed that exposure to Pb and V led to significant changes in gene expression in Arabidopsis seedlings compared to untreated samples. Through Gene Ontology and pathway analysis, we identified several biological processes and pathways associated with the differentially expressed genes. Overall, this investigation sheds light on the molecular mechanisms underlying the toxicity and tolerance of Arabidopsis to Pb and V, providing valuable insights into how plants respond to heavy metal stress.
DOI: 10.17632/8wp4rx7xtb.1
title: Supplementary file 5, Significantly differentially expressed genes and transcripts

description: This study focuses on understanding how plants, specifically Arabidopsis thaliana, respond to two major pollutants, lead (Pb) and vanadium (V) found in oil contaminated land. While the effects of these pollutants on animals are well-studied, their impact on plants is not as clear. To fill this gap, we exposed Arabidopsis seedlings to Pb and V and analyzed the changes in gene expression using advanced sequencing and validated the data using RT PCR technique.
The results showed that exposure to Pb and V led to significant changes in gene expression in Arabidopsis seedlings compared to untreated samples. Through Gene Ontology and pathway analysis, we identified several biological processes and pathways associated with the differentially expressed genes. Overall, this investigation sheds light on the molecular mechanisms underlying the toxicity and tolerance of Arabidopsis to Pb and V, providing valuable insights into how plants respond to heavy metal stress.
DOI: 10.17632/cx9vybjsr2.1
title: Supplementary file 3, Expression level of the Arabidopsis transcripts in FPKM (Fragments Per Kilobase of transcript per Million mapped reads)

description: This study focuses on understanding how plants, specifically Arabidopsis thaliana, respond to two major pollutants, lead (Pb) and vanadium (V) found in oil contaminated land. While the effects of these pollutants on animals are well-studied, their impact on plants is not as clear. To fill this gap, we exposed Arabidopsis seedlings to Pb and V and analyzed the changes in gene expression using advanced sequencing and validated the data using RT PCR technique.
The results showed that exposure to Pb and V led to significant changes in gene expression in Arabidopsis seedlings compared to untreated samples. Through Gene Ontology and pathway analysis, we identified several biological processes and pathways associated with the differentially expressed genes. Overall, this investigation sheds light on the molecular mechanisms underlying the toxicity and tolerance of Arabidopsis to Pb and V, providing valuable insights into how plants respond to heavy metal stress.