cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3573918.v1
title: Appendix E. Spearman rank correlation between species prevalence and the combined importance of vertical or horizontal biotic interactions.

description: Spearman rank correlation between species prevalence and the combined importance of vertical or horizontal biotic interactions.
DOI: 10.6084/m9.figshare.24798825.v1
title: Behavioural Data

description: Behavioural dataset from the paper " Pasquini et al. Microplastics reach the brain and interfere with honey bee cognition were the effects of polystyrene (PS), plexiglass (PMMA) MPs, and a combination of the two, at three evaluated concentrations (0.5, 5 and 50 mg/L-1) on sucrose responsiveness and appetitive olfactory learning and memory.
DOI: 10.6084/m9.figshare.28045568.v1
title: Training Data of the DPMD used in "Interfaces Govern Structure of Angstrom-Scale Confined Water"

description: The data is corresponding to the training data set for DPMD simulations. Reported by the paper: https://arxiv.org/abs/2310.10354
DOI: 10.17045/sthlmuni.21354195.v1
title: Open data: Neural electrophysiological correlates of detection and identification awareness

description: Open data: Neural electrophysiological correlates of detection and identification awarenessSupplementary material for the associated publication.OVERVIEWHumans have conscious experiences of the events in their environment. Previous research from electroencephalography (EEG) has shown visual awareness negativity (VAN) at about 200 ms to be a neural correlate of consciousness (NCC). In the present study, the stimulus was a ring with a Gabor patch tilting either left or right. On each trial, subjects rated their awareness on a three-level perceptual awareness scale that captured both detection (something vs. nothing) and identiﬁcation (identiﬁcation vs. something). Separate staircases were used to adjust stimulus opacity to the detection threshold and the identiﬁcation threshold. Event-related potentials were extracted for VAN and late positivity.DATE & LOCATION OF DATA COLLECTION:Subjects (N = 43, student volunteers) were tested between 2022-maj-23 and 2022-june-30 at the Department of Psychology, Campus Albano, Stockholm, Sweden.DATA & FILE OVERVIEWThe files contain the raw data, scripts, and results of main and supplementary analyses of the electroencephalography (EEG) study reported in the main publication.For convenience, the report files of the main analyses in the manuscript are saved separately.Visual awareness negativity (VAN) results: analysis_VANo_clean_data_blocklength_16_pawarelimit0.8_maxopadetect_maxopaidentify_badEEGyes_ntrials25.htmlLate positivity (LP) results: analysis_LPo_clean_data_blocklength_16_pawarelimit0.8_maxopadetect_maxopaidenify_badEEGyes_ntrials25.htmlbdf_up_to_20.zip: contains EEG data files for the first 20 subjects in .bdf format (generated by the Biosemi amplifier)bdf_after_20.zip: contains EEG data files for the remaining subjects in .bdf format (generated by the Biosemi amplifier)Log.zip: contains log files of the EEG session (generated by Python)readme_notes_on_id.txt: Information about issues during data collectionMNE-python.zip: contains scripts in MNE-python to preprocess the EEG dataR_graded.zipThe main reports are in R_graded &gt; results &gt; reports. They are .html files generated with Quarto.photodiode_supplement.pdf: Supplementary analysis of the relationship between python opacity settings and actual changes on the computer screenMETHODOLOGICAL INFORMATIONThe visual stimuli were gabor-grated rings. Subjects rated their awareness of the rings. Event-related potentials were computed from the EEG data.The experiment was programmed in Python: https://www.python.org/The EEG data were recorded as .bdf files with an Active Two BioSemi system (BioSemi, Amsterdam, Netherlands; www.biosemi.com)Instrument- or software-specific information needed to interpret the data:MNE-Python (Gramfort A., et al., 2013): https://mne.tools/stable/index.html#R and relevant packages: https://www.r-project.org/<br><br>
DOI: 10.6084/m9.figshare.4811077.v1
title: MOUtbhR RNA-seq functions analysis

description: RNA-seq pipeline analysis of mouse single end libraries.
DOI: 10.6084/m9.figshare.5121199.v1
title: Supplementary Material for: Constructing Defined Chromosome Segmental Duplications in Maize

description: We describe the production of chromosome segmental duplications and deletions of defined length in maize. The method utilizes a collection of previously isolated transposon-induced reciprocal translocations with sequence-defined breakpoints. These balanced translocations involve a first common breakpoint at the site of transposon <i>Ac/fAc </i>insertions on chromosome 1S, and a second variable endpoint elsewhere in the genome. Stocks containing translocations with different endpoints on the same chromosome arms were crossed together to generate heterozygous combinations. Subsequent meiotic segregation generates gametes that contain the original balanced translocations, or pairs of translocation chromosomes that are genetically unbalanced; i.e., they contain a duplication or deletion of the affected segment. Self-pollination produces progeny plants that are genetically balanced, or that contain 0 to 4 copies of the affected segment. The chromosome constitution of progeny plants can be determined using PCR primers flanking the translocation breakpoints. In addition, plants segregating genetically unbalanced gametes exhibit significant pollen grain abnormalities and thus can be easily detected in the field. In this way, we constructed 4 different segmental tetrasomic stocks involving genomic regions of approximately 7.8, 18.7, 21, and 42.6 Mb on chromosomes 5S, 5L, 5L, and 4L, respectively. FISH analysis using specific probes located within the affected segments confirms their aneuploid composition. These and similar lines containing precisely defined segmental duplications and deletions may be useful to study the genetic impact of gene dosage.
DOI: 10.6084/m9.figshare.5125558.v1
title: Supplementary Material for: Walnuts (Seeds of <b><i>Juglandis</i></b> <b><i>sinensis</i></b> L.) Protect Human Epidermal Keratinocytes against UVB-Induced Mitochondria-Mediated Apoptosis through Upregulation of ROS Elimination Pathways

description: <b><i>Purpose:</i></b> Ultraviolet (UV) light from sunlight is an important environmental factor causing hazardous health effects, including various skin disorders. UV irradiation downregulates reactive oxygen species (ROS) elimination pathways, thereby promoting the production of ROS, which are implicated in mitochondria-mediated apoptosis. Walnuts, the seeds of <i>Juglandis</i><i>sinensis</i> L., are a highly nutritious food and have been shown to have a number of pharmacological activities. To our knowledge, no study on the protective effects of walnuts on human epidermal keratinocytes has been reported previously. Here, we investigated the protective effects of walnuts against UVB (50 mJ/cm<sup>2</sup>) -induced mitochondria-mediated apoptosis. <b><i>Procedures and Results:</i></b> Walnuts significantly and dose-dependently reduced UVB-induced apoptotic toxicity by lactate dehydrogenase assay kit. Walnuts decreased mitochondrial dysfunction, B-cell lymphoma 2 (Bcl-2)-associated X (Bax) protein levels, and cytochrome c release from mitochondria, while increasing Bcl-2 protein levels using immunofluorescence, Western blot, or kit analysis. Moreover, walnuts inhibited caspase-3 activity, indicating an inhibition of the apoptotic cascade, and induced the expression of heme oxygenase and NAD(P)H dehydrogenase via NF-E2-related factor-2 activation using immunofluorescence or Western blot analysis. <b><i>Conclusion:</i></b> Together, these results demonstrate that walnuts can protect human epidermal keratinocytes against UVB-induced mitochondria-mediated apoptosis by regulating ROS elimination pathways.
DOI: 10.6084/m9.figshare.26130403.v1
title: <b>Quarter-Life Crisis During the Pandemic: Career Indecision, Intolerance of Uncertainty and Mental Well-Being in Emerging Adults</b>

description: <b>Quarter-Life Crisis During the Pandemic: Career Indecision, Intolerance of Uncertainty and Mental Well-Being in Emerging Adults</b>
DOI: 10.6084/m9.figshare.28759460.v1
title: Supplemental Tables S1-2.pdf

description: Influence of pulmonary hypertension (PH) and treatment with a combination of ambrisentan (AMB) and tadalafil (TAD) on left ventricular (LV) parameters measured by echocardiography in three weight sets of monocrotaline (MCT)-induced PH rats and their controls (CTR).Influence of pulmonary hypertension (PH) and treatment with a combination of ambrisentan (AMB) and tadalafil (TAD) on selected physiological parameters in three weight sets of monocrotaline (MCT)-induced PH rats and their controls (CTR).
DOI: 10.6084/m9.figshare.9784976.v1
title: Subject 2

description: Data from Subject 2
DOI: 10.6084/m9.figshare.14534118.v1
title: Supplementary raw data and code from "Robust adaptive optics for localization microscopy deep in complex tissue"

description: Supplementary raw data and code from the paper:<br><i>"Robust adaptive optics for localization microscopy deep in complex tissue"</i><br>Marijn E. Siemons, Naomi A.K. Hanemaaijer, Maarten H.P. Kole, Lukas C. Kapitein
DOI: 10.6084/m9.figshare.13049975.v2
title: GEB_PPT

description: The data set for meta-analysis submitted to GEB.
DOI: 10.6084/m9.figshare.24249424.v1
title: Supplementary Material for: Cystoid macular edema following treatment with nanoparticle albumin-bound paclitaxel and atezolizumab for metastatic breast cancer

description: Cystoid macular edema (CME) is a rare side effect associated with chemotherapy. Although the development of CME has been reported to occur following treatment with taxane drugs, such as nanoparticle albumin-bound paclitaxel (Nab-PTX), the occurrence of CME with treatment with atezolizumab has not yet been reported. Here, we report the case of a 49-year-old woman who developed CME 19 months into chemotherapy with Nab-PTX and atezolizumab. Improvement was not acheieved with steroid injections into the Tenon’s sac, and Nab-PTX and atezolizumab treatments were ceased. One month later, there was subjective improvement in her symptoms. Although many reports have indicated that cessation of chemotherapy has successfully improved CME, a specific treatment for CME has not yet been established. Clinicians should be aware of the ophthalmologic side effects and offer immediate treatment if symptoms develop.
DOI: 10.4121/12888455.v1
title: Data from Paper Palladium Zero-Mode Waveguides for Optical Single Molecule Detection with Nanopores

description: This is the data underlying the publication: Palladium Zero-Mode Waveguides for Optical Single Molecule Detection with Nanopores<br>There are three different datasets in there:1. On Chip R9_1104_25 data on freely diffusing fluorophores (Atto 647N, Atto 488)2. On Chip R9_1104_30 there is the data of BSA translocations at different concentrations3. Data on DNA translocations of different lengths under different driving voltages. (No R… chip indicated)<br><br>All metadata can be found in the photon-hdf5 files, a small readme file is also included.<br>
DOI: 10.6084/m9.figshare.14838228.v1
title: Supplementary Material for: High-Sensitive Cardiac Troponin T for Prediction of Cardiovascular Outcomes in Stable Maintenance Hemodialysis Patients: A 3-Year Prospective Study

description: <b><i>Background:</i></b> Hemodialysis patients, who are often excluded from cardiovascular (CV) clinical trials, are associated with higher CV morbidity and mortality. The risk stratification scheme for these patients is lacking. Therefore, this investigation examined the independent CV prognostic value of high-sensitive cardiac troponin T (hs-cTnT) and added prognostic value over echocardiographic parameters and other clinical risk predictors in asymptomatic stable maintenance hemodialysis (MHD) patients. <b><i>Methods:</i></b> 181 patients with end-stage renal disease undergoing MHD were eligible from the dialysis center of Tongren Hospital, Shanghai Jiao Tong University School of Medicine between October 2017 and September 2018. These patients were followed until September 2020 or until death. The median follow-up was 31 (IQR: 21–33) months. Outcome measures were all-cause mortality, first fatal or nonfatal CV events (CVEs), and 4-point composite major adverse CVEs (MACE). We performed multivariable Cox regression analysis using demographic, clinical, laboratory, and echocardiographic data to identify predictors of CV outcomes. We also evaluated the increased discriminative value associated with the addition of echocardiographic parameters and hs-cTnT using net reclassification improvement (NRI) and integrated discrimination improvement (IDI). <b><i>Results:</i></b> During follow-up, 37 patients died, 84 patients suffered one or more CVEs, and 78 patients developed 4-point MACE. In univariable analyses, age, dialysis vintage, diastolic blood pressure, parathyroid hormone concentrations, hs-cTnT, B-type natriuretic peptide, left ventricular mass index (LVMI), and <i>E</i>/<i>E</i>′ predicted all end points. hs-cTnT remained a strong predictor for each end point in multivariate analysis, whereas LVMI and <i>E</i>/<i>E</i>′ did not. The addition of hs-cTnT on top of clinical and echocardiographic variables was associated with improvements in reclassification for CVEs (NRI = 44.6% [15.9–74.3%], IDI = 15.9% [5.7–31.0%], all <i>p</i> &lt; 0.001), all-cause mortality (NRI = 35.5% [10.1–50.2%], <i>p</i> &lt; 0.001, IDI = 4.4% [1.3–8.5%], <i>p</i> = 0.005), and 4-point MACE (NRI = 47.2% [16.1–64.9%], <i>p</i> &lt; 0.001, IDI = 16.9% [5.5–37.3%], <i>p</i> = 0.005). Adding echocardiographic variables on top of clinical variables and hs-cTnT was not associated with significant improvements in NRI and IDI (all <i>p</i> &gt; 0.05). <b><i>Conclusions:</i></b> Our data suggest that hs-cTnT is a powerful independent predictor of CV outcome and all-cause mortality in stable MHD patients. The additional use of echocardiography for improvement of risk stratification is not supported by our results.
DOI: 10.5519/qd.yvrcfaqk
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1309272 records)
DOI: 10.15468/dl.eceh3c
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Biston stratarius Meyrick, 1895"
 ]
}

 The dataset includes 33 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009591-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.5731281.v1
title: Mouse frequency data.xlsx

description: Raw frequency data for top 1000 aptamers selected against transgenic mice.
DOI: 10.6084/m9.figshare.22596799.v1
title: Data from: Coupling state-of-the-art modelling tools for better informed Red-List assessments of marine fishes

description: Research survey data used in "Coupling state-of-the-art modelling tools for better informed Red-List assessments of marine fishes", a manuscript submitted to Journal of Applied Ecology.
DOI: 10.6084/m9.figshare.19024247.v1
title: Cavity radiation modelling in a slim-floor beam system validation study

description: The following data set contains the result of a Cavity radiation modelling in a slim-floor beam system validation study. Abaqus was utilized to perform the analysis.<br>Paper: Fire design of a new slim floor beam system using fem-analysis (2002).<br>By:<br>Schaumann, P.<br>Hothan, S.<br>
DOI: 10.6084/m9.figshare.25927369.v1
title: Dataset - Andersen, Robertson, MacMillan - Thermal sensitivity of spreading depolarization in the CNS of <i>Drosophila melanogaster</i>

description: This data file contains all data used for production of the figures presented in the paper"Thermal sensitivity of spreading depolarization in the CNS of <i>Drosophila melanogaster</i>"<br><br>by Mads Kuhlmann Andersen<sup>1,3</sup>*, R. Meldrum Robertson<sup>2</sup> and Heath A. MacMillan<sup>1</sup><br><sup><em>1</em></sup><i>Department of Biology, Carleton University, Ottawa, ON, Canada</i><br><sup><em>2</em></sup><i>Department of Biology, Queen’s University, Kingston, ON, Canada</i><sup><em>3</em></sup><i>Current address: Department of Biology, Aarhus University, Aarhus, Denmark</i>
DOI: 10.6084/m9.figshare.12982082.v1
title: Supplementary Material for: Einsatz standardisierter Patienten im Psychologiestudium: Von der Forschung in die Praxis

description: <b><i>Hintergrund:</i></b> Im Rahmen des reformierten Psychotherapeutengesetzes wird eine stärkere Praxisorientierung in der klinisch-psychologischen Lehre und in der Prüfung psychotherapeutischer Kompetenzen verankert. Hierbei sollen Studierende durch die Interaktion mit standardisierten Patient*innen (SP) therapeutische Kompetenzen erwerben und demonstrieren. <b><i>Fragestellung:</i></b> Das Ziel des vorliegenden Beitrags ist es, eine evidenzbasierte Umsetzung dieser neuen Lehr- und Prüfungsformate zu unterstützen, indem bisherige Forschungsbefunde zum Einsatz von SP dargestellt und Bereiche, in denen weitere Forschung notwendig ist, aufgezeigt werden. <b><i>Ergebnisse:</i></b> Empirische Befunde zeigen, dass SP psychische Störungen authentisch darstellen können. Voraussetzung dafür sind beispielsweise die Auswahl geeigneter SP, detaillierte Rollenanleitungen, spezifisches Training, Feedback und Nachschulungen. Auch wenn einige Forschungsfragen, wie zur vergleichenden Wirksamkeit des Einsatzes von SP, noch unbeantwortet sind, lassen sich praktische Implikationen für SP-Programme in Lehre, Prüfung und Forschung ableiten, die in einem Ablaufschema dargestellt werden. <b><i>Schlussfolgerungen:</i></b> Der Einsatz von SP bietet großes Potenzial für die klinisch-psychologische Lehre und Ausbildungsforschung. Um den Einsatz von SP an anderen Standorten zu unterstützen, werden Beispielmaterialien (z.B. Rollenanleitung) in den elektronischen Supplementen (siehe www.karger.com/doi/10.1159/000509249 für alle Supplemente) zum Artikel zur Verfügung gestellt.
DOI: 10.6084/m9.figshare.21288216.v1
title: Claudio's and controls' 2015 Score

description: Claudio's and controls' score summary from 2015
DOI: 10.6084/m9.figshare.28691480.v3
title: None

description: None
DOI: 10.6084/m9.figshare.4815049.v1
title: Facebook & French Presidential Elections 2017

description: The files corresponding to a study conducted on Facebook in the context of the presidential elections.
DOI: 10.6084/m9.figshare.1371136.v1
title: multi_reduced_sorted4.txt

description: Data-set analysed in Study 1 in Smithson, M., Sopena, A., and Platow, M. “When Is Group Membership Zero-Sum? Effects of Ethnicity, Threat, and Social Identity on Dual National Identity”.
DOI: 10.6084/m9.figshare.6984323.v1
title: Shower data from six hotels

description: Shower data (water consumption, average temperature, flow rate, energy) collected in six different Swiss hotels in 2016.
DOI: 10.6084/m9.figshare.1629350
title: Ionic liquids versus ionic liquid-based surfactants in dispersive liquid–liquid microextraction for determining copper in water by flame atomic absorption spectrometry

description: This work compares the performance of dispersive liquid–liquid method (DLLME) as a prior step for determining copper by flame atomic absorption spectrometry (FAAS), when using the ionic liquid (IL) 1-butyl-3-methylimidazolium hexafluorophosphate (C<sub>4</sub>MIm-PF<sub>6</sub>) or the IL-based surfactant 1-hexadecyl-3-butylimidazolium bromide (C<sub>16</sub>C<sub>4</sub>Im-Br) as extractant solvents. For the water-insoluble C<sub>4</sub>MIm-PF<sub>6</sub>, the most conventional DLLME mode using acetonitrile as dispersive solvent was employed. For the water-soluble C<sub>16</sub>C<sub>4</sub>Im-Br, the in situ DLLME mode with lithium bis[(trifluoromethane)sulfonyl]imide (Li-NTf<sub>2</sub>) as metathesis reagent was employed. In both approaches, some effective parameters such as volumes of extractant and dispersive solvents, concentration of complexing agent, pH of sample solution, salting-out effect and final diluting solvent to ensure compatibility with FAAS, were properly optimised. The optimum conditions for the IL-DLLME method using C<sub>4</sub>MIm-PF<sub>6</sub> were: 100 μL of neat C<sub>4</sub>MIm-PF<sub>6</sub>, 1 mL of acetonitrile, 10 mL of water, no control of pH for environmental waters, NaCl content of 23 g L<sup>−</sup><sup>1</sup>, diethyl dithiocarbamate (DDTC) as complexing agent at 10 mg L<sup>−1</sup> and final dilution of the micro-droplet with acetonitrile up to 70 µL. The optimum conditions for the in situ IL-DLLME method using C<sub>16</sub>C<sub>4</sub>Im-Br were: 0.8 mL of acetonitrile, 10 mL of water containing C<sub>16</sub>C<sub>4</sub>Im-Br at 25.2 mmol L<sup>−1</sup>, final dilution step of the micro-droplet with 200 µL of acetonitrile and remaining conditions as those of C<sub>4</sub>MIm-PF<sub>6</sub>. The analytical performance of both methods was similar, being slightly better for the IL-DLLME method using C<sub>4</sub>MIm-PF<sub>6</sub>, with limits of detection (LOD) of 3.3 µg L<sup>−1</sup> (versus 5.1 µg L<sup>−1</sup> when using C<sub>16</sub>C<sub>4</sub>Im-Br), precision values as intraday relative standard deviation (RSD in %) lower than 8.8% (being of 10% for the C<sub>16</sub>C<sub>4</sub>Im-Br method) and an enrichment factor of 54 (being 27 when using C<sub>16</sub>C<sub>4</sub>Im-Br). The DLLME-FAAS method with C<sub>4</sub>MIm-PF<sub>6</sub> was used in the analysis of environmental waters with successful performance, with relative recoveries of 110% and 105%, and interday precision with RSD values of 21% and 7.4% for spiked levels of 60 and 160 µg L<sup>−1</sup>, respectively. The results obtained when analysing an urban wastewater sample coming from an inter-laboratory exercise was comparable to those obtained for other 93 laboratories. The method was also valid for the determination of Cu<sup>2+</sup> in presence of foreign ions commonly found in natural waters.
DOI: 10.6084/m9.figshare.21789092.v6
title: Effects of joint mobilization combined with acupuncture on pain in stroke patients with chronic neuropathic pain: a randomized controlled trial

description: Pain, physical function, and depression in stroke patients before and after the intervention.