cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.59zw3r2cz
title: Effects of density on the strength of sexual selection in the lab and in nature in an undescribed amphipod species

description: There is a growing effort to understand how sexual selection varies over
 space and time under different ecological conditions and how this can
 maintain variation in sexual traits. An interesting ecological condition
 is population density, which can either increase or decrease sexual
 selection depending on the natural history of the species. We examined
 sexual and natural selection in an undescribed amphipod species (Hyalella
 sp.) using surveys of two natural populations that increase in density
 from spring to summer. We also conducted an experiment that directly
 manipulated density to assess the effects on sexual selection. In the
 field during spring (low density) and summer (high density), we documented
 sexual selection on male traits, including body size, gnathopods, and
 antennae. We discovered the magnitude and direction of this selection
 changed from spring to summer and selection patterns differed between
 populations. In the experiment, we found no sexual selection occurred at
 low density, but significant positive selection on all three male traits
 at medium and high densities. These results underscore the importance of
 isolating individual ecological factors to determine their role in sexual
 selection while also documenting patterns in natural populations to
 understand how selection varies over space and time.
description: Two files are included: data used for examining field patterns of
 sexual and natural selection and data from the density manipulation
 experiment. Data is provided in csv format, so it is accessible using a
 variety of programs.
DOI: 10.5061/dryad.zkh1893fj
title: Improving metrology with quantum scrambling

description: Quantum scrambling describes the spreading of information into many
 degrees of freedom in quantum systems, such that the information is no
 longer accessible locally, but becomes distributed throughout the system.
 This idea can explain how quantum systems become classical and acquire a
 finite temperature, or how in black holes the information about the matter
 falling in is seemingly erased. We probe the exponential scrambling of a
 multi-particle system near a bistable point in phase space and utilize it
 for entanglement-enhanced metrology. A time-reversal protocol is used to
 observe a simultaneous exponential growth of both the metrological gain
 and the out-of-time-order correlator, thereby experimentally verifying the
 relation between quantum metrology and quantum information scrambling. Our
 results show that rapid scrambling dynamics capable of exponentially fast
 entanglement generation are useful for practical metrology, resulting in
 6.8(4) dB gain beyond the Standard Quantum Limit.
DOI: 10.5061/dryad.dz08kps2m
title: Heliconia-dwelling invertebrate abundances following a simulated hurricane disturbance

description: Disturbances like hurricanes can affect diversity and community
 composition, which may in turn affect ecosystem function. We examined how
 a simulated hurricane disturbance affected insect communities inhabiting
 the phytotelma (plant-held waters) of Heliconia caribaea in the Luquillo
 Experimental Forest of eastern Puerto Rico, a tropical island that
 frequently experiences hurricanes. We hypothesized that disturbance would
 alter diversity and that larger Heliconia would attract more species
 following disturbance due to the area-diversity relationship described by
 the Theory of Island Biogeography. Individual flower parts (bracts) of
 Heliconia inflorescences (racemes) were artificially disturbed via removal
 of existing insect communities, then after refilling with water, cohorts
 of Heliconia were destructively sampled biweekly for six weeks to assess
 recolonization patterns of α (bract level), β, and γ (summed across
 bracts; raceme level) diversity over time and across raceme sizes.
 Although we found no support for our hypothesis about the effect of raceme
 size on recolonization, our hypothesis regarding recolonization patterns
 over time was supported; species richness, evenness, and abundance of
 bracts increased directly after the disturbance and then decreased below
 pre-disturbance levels, and community composition at the raceme level
 changed significantly over time during recolonization. β diversity was
 also greater in smaller racemes compared to larger racemes, suggesting
 high heterogeneity across bracts of Heliconia racemes exacerbated by
 raceme size and age. Overall, our results highlight the importance of
 scale and appropriate measurements of diversity (particularly α) in
 experiments aiming to extrapolate conclusions about the ecological impacts
 of disturbances across different habitats and ecosystems.
DOI: 10.25349/d9rs56
title: DEBRIS FREE SEAS: Assessing Lost Gear Removals in Southern California by a Nonprofit

description: This project aims to evaluate the impact of derelict fishing gear on the
 marine ecosystem, fishing communities, and the economy in Southern
 California through a case study centered on the commercial California
 spiny lobster fishery. Data on ghost fishing and marine wildlife
 entanglements were analyzed alongside data from marine debris removal
 expeditions. We found that derelict spiny lobster trap gear does not pose
 a large threat of entanglement to migrating whales. Furthermore the
 largest impact from derelict gear is likely ghost fishing, which can
 result in significant profit losses to the spiny lobster fishery. Our
 analysis suggests that up to 12,000 pounds of spiny lobster (equivalent to
 8,000 lobsters) are potentially ghost fished each year, based on the
 average number of traps lost in the spiny lobster fishery in a year and
 our estimated ghost fishing rate of 2.19 lobsters per trap. Trap loss, and
 subsequent ghost fishing by derelict gear, can cause spiny lobster fishers
 to lose anywhere from $216,122–$931,672 USD in annual profits.
 Additionally, we distributed surveys to gather information from
 recreational and commercial fishers along the coast on how gear loss
 affects their livelihoods. Our survey results indicate that fishers are
 willing to collaborate with nonprofits like ODA to mitigate the negative
 impacts of derelict fishing gear on the environment and their livelihoods.
 Further, the collated survey responses and environmental data were used to
 identify "gear loss hot spots'' to improve gear retrieval
 efficiency. Lastly, our study provided recommendations and outreach
 materials to ODA to support its mission of a debris-free sea in Southern
 California and to bolster volunteer participation and grow funding
 opportunities.
description: Please see the Methods section of attached final report
 "Debris Free Seas Final Report.pdf". 
description: Users will need ArcGIS Pro or QGIS to read files from the
 HAB_CA_predictedSubstrate_WZ.zip folder.
DOI: 10.5061/dryad.47d7wm3k4
title: Frugivory and seed dispersal in the Cerrado: Network structure and defaunation effects

description: Seed dispersal is a fundamental process that is highly threatened by the
 rapid decline of large-bodied frugivores worldwide. The Brazilian Cerrado,
 the largest savanna in the world, represents an ideal site for
 investigating seed dispersal because of its biodiversity, environmental
 challenges, and knowledge shortfalls. We performed a Systematic Literature
 Review to analyze the seed dispersal network in the Cerrado and the
 potential impacts of the defaunation of large-bodied frugivores on it. We
 considered network metrics, calculated the defaunation index of the
 frugivore assemblage, and compared traits among different fruit-sized
 plants and their respective dispersers in the network. We retrieved 1,565
 interactions involving 193 plant species and 270 animal species. Results
 show that the Cerrado seed dispersal network is slightly nested and
 considerably modular, dominated by small to medium-sized generalist
 species, such as passerines, marsupials, and mesocarnivores. Nonetheless,
 large-bodied frugivores like the lowland tapir have a key role in the
 network due to their great foraging and network integration capacity. The
 Cerrado frugivore assemblage is moderately defaunated, with possible
 effects in its interactions with large-fruited plants.  The
 Cerrado’s defaunation and functional loss of large vertebrates deserve
 urgent attention to further understand the impacts on seed dispersal
 mechanisms and ecosystem functioning.
description: The dataset on seed dispersal interactions was obtained from
 studies retrieved in a systematic literature review. Data on species
 traits (e.g., dispersers' body mass, fruit and seed size) were
 obtained from specific literature. 
description: To open the spreadsheet files included in our submission, you can
 use '<em>Microsoft Excel</em>' or any alike
 software.
DOI: 10.5061/dryad.7d7wm380z
title: Coyote prey DNA from coyote saliva to test efficacy of obtaining diet information from oral swabs

description: Human-carnivore conflicts often involve the depredation of domestic
 livestock. These depredation events are rarely observed, yet mitigation
 typically involves identifying the species or individual involved for
 removal or relocation. We tested a molecular method to identify
 individuals involved in depredation events using mouth swabs to determine
 if prey DNA could be detected, and for how long. We fed mule deer
 (Odocoileus hemionus) meat to captive coyotes (Canis latrans) and swabbed
 their mouths at five predetermined intervals between 2-72 hours after
 consumption of the deer meat. We assessed two different molecular forensic
 methods to analyze the saliva swabs: qPCR for species identification and
 microsatellites for individual prey identification. We found that qPCR
 analysis was highly effective, detecting the deer DNA in the coyote saliva
 for up to 72 hours post-deer consumption. Our results suggest that if an
 individual carnivore suspected of livestock depredation is captured within
 72 hours of a depredation incident, it is possible to confirm their
 potential involvement with a buccal swab and qPCR analysis. Utilizing this
 method could aid in more targeted and effective removal of individual
 problem carnivores as opposed to widespread removal of involved species.
description: Coyotes were fed deer meat and oral cavities were swabbed at set
 time intervals up to 72 hours after consumption. Swabs sent to two labs
 for genetic extraction. See methods of manuscript for details. 
description: # Coyote DNA - saliva study *** Coyote ID and related deer DNA quantities
 (avg across 3 replicate samples) from swabs collected at set time
 intervals since fed deer meat. ## Description of the data and file
 structure See Table 1 in the manuscript to match to raw data here. Column
 Headings = Sample: Coyote ID (first two digits are DOB, third is litter
 ID, and 4th is odd for male, even for female) and event of sample after
 the underscore. SamplingTime: The event sample was collected after feeding
 TimePostFeeding: Hours after feeding the event of obtaining a sample was
 done CTvalue: cycle threshold value DNAquantity: amount of DNA amplified
 Note - all samples were run in triplicate so there are 3 DNA and CT values
 per sample event per animal.
DOI: 10.6086/d1p09p
title: Aquarius remigis measurements

description: Excel file containing measurements in mm of all water striders (Aquarius
 remigis) from the pedigree experiment described in Fairbairn DJ, Roff DA,
 Wolak ME (2023) Tests for associations between sexual dimorphism and
 patterns of quantitative genetic variation in the water strider, Aquarius
 remigis. Heredity The evolution of sexual dimorphisms requires divergence
 between sexes in the evolutionary trajectories of the traits involved.
 Discerning how genetic architecture could facilitate such divergence has
 proven challenging because of the difficulty in extimating non-additive
 and sex-linked genetic variances using traditional quantitative genetic
 designs.  Here we use a 3-generation, double-first-cousin
 pedigree design to estimate additive, sex-linked and dominance
 (co)variances for 12 traits in the water strider, Aquarius remigis.
 Comparisons among these traits, which have size ratios ranging fron 1 to 5
 (larger/smaller) allow us to ask if sexual dimorphisms are associated with
 characteristic patterns of quantitative genetic variation.  We
 frame our analysis around three main questions, derived from existing
 theory and empirical evidence: Are sexual dimorphisms associated with (1)
 lower additive inter-sex genetic correlations, (2) higher proportions of
 sex-linked variance, or (3) differences between sexes in autosomal
 additive and dominance genetic variances. For questions (1) and (2), we
 find weak and non-significant trends in the predicted directions, which
 preclude definitive conclusions.  However, in answer to question
 (3), we find strng evidence for a positive relationship between sexual
 dimorphism and differences between sexes in proportions of autosomal
 dominance variance.  We also find strong interactions among the
 three genetic components indicating that their relative influence differs
 among traits and between sexes.  These results highlight the need
 to include all three components of genetic (co)variance in both
 theoretical evolutionary models and empirical estimations of the genetic
 architecture of dimorphic traits.
description: Results of a three generation rearing experiment in the
 laboratory under controlled conditions. For details of rearing and
 measurement protocols and landmarks used, see Supplementary Information in
 the above manuscript.
description: Excel
DOI: 10.5061/dryad.tb2rbp05r
title: Evolutionary rate analysis of aminoacyl tRNA synthetases

description: Eukaryotic nuclear genomes often encode distinct sets of protein
 translation machinery for function in the cytosol vs. organelles
 (mitochondria and plastids). This phenomenon raises questions about why
 multiple translation systems are maintained even though they are capable
 of comparable functions, and whether they evolve differently depending on
 the compartment where they operate. These questions are particularly
 interesting in land plants because translation machinery, including
 aminoacyl-tRNA synthetases (aaRS), is often dual-targeted to both the
 plastids and mitochondria. These two organelles have quite different
 metabolisms, with much higher rates of translation in plastids to supply
 the abundant, rapid-turnover proteins required for photosynthesis.
 Previous studies have indicated that plant organellar aaRS evolve more
 slowly compared to mitochondrial aaRS in other eukaryotes that lack
 plastids. Thus, we investigated the evolution of nuclear-encoded
 organellar and cytosolic translation machinery across a broad sampling of
 angiosperms, including non-photosynthetic (heterotrophic) plant species
 with reduced rates of plastid gene expression to test the hypothesis that
 translational demands associated with photosynthesis constrain the
 evolution of bacterial-like enzymes involved in organellar tRNA
 metabolism. Remarkably, heterotrophic plants exhibited wholesale loss of
 many organelle-targeted aaRS and other enzymes, even though translation
 still occurs in their mitochondria and plastids. These losses were often
 accompanied by apparent retargeting of cytosolic enzymes and tRNAs to the
 organelles, sometimes preserving aaRS-tRNA charging relationships but
 other times creating surprising mismatches between cytosolic aaRS and
 mitochondrial tRNA substrates. Our findings indicate that the presence of
 a photosynthetic plastid drives the retention of specialized systems for
 organellar tRNA metabolism.
description: Datasets are multiple sequence alignments and gene trees for
 aminoacyl tRNA-synthetase enzyme amino acid sequences curated from
 publically available data. These data were used to evaluate evolutionary
 rate. I've also included code used for analysis. 
description: Python3 Jupyter Notebooks
 MEGA11
DOI: 10.5281/zenodo.18438516
title: TIBBIYOTDAGI RAQAMLASHTIRISH JARAYONIDA AXBOROT TEXNOLOGIYALARINING O'RNI

description: Mazkur maqolada tibbiyot sohasida raqamlashtirish jarayonining asosiy yo‘nalishlari va ushbu jarayonda axborot texnologiyalarining tutgan o‘rni ilmiy jihatdan tahlil qilinadi. Bugungi kunda sog‘liqni saqlash tizimida elektron tibbiy hujjatlar, telemeditsina, sun’iy intellekt, katta hajmdagi ma’lumotlar (Big Data), mobil sog‘liqni saqlash (mHealth) va tibbiy axborot tizimlarining keng joriy etilishi tibbiy xizmatlar sifatini sezilarli darajada oshirmoqda. Maqolada raqamli texnologiyalarning diagnostika, davolash, profilaktika va boshqaruv jarayonlariga ta’siri yoritilgan. Tadqiqot davomida ilmiy adabiyotlar tahlili, qiyosiy va tizimli yondashuv usullaridan foydalanildi. Olingan natijalar axborot texnologiyalarining tibbiyotda qo‘llanilishi inson omilidan kelib chiqadigan xatoliklarni kamaytirish, resurslardan samarali foydalanish hamda bemorlar uchun qulaylik yaratishda muhim ahamiyatga ega ekanini ko‘rsatadi. Sog‘liqni saqlash amaliyotiga axborot texnologiyalarining joriy etilishi  shifokorlar va bemorlar o‘rtasidagi o‘zaro munosabatlarning shakl va usullarini, diagnostika va  davolash jarayonlarini, kasalliklarning oldini olish va sog‘lomlashtirish usullarini o‘zgartiradi.  Keksa va yosh foydalanuvchilar hamda axborot texnologiyalaridan foydalanish imkoniyati va  undan foydalanish imkoniyatiga ega bo‘lgan jamiyatning boshqa qatlamlari o‘rtasida paydo  bo‘layotgan raqamli tafovutga e’tibor qaratiladi. Raqamli texnologiyalarni qo‘llashda  mas’uliyatning o‘ziga xos xususiyatlari ko‘rib chiqiladi.
DOI: 10.5281/zenodo.18438517
title: TIBBIYOTDAGI RAQAMLASHTIRISH JARAYONIDA AXBOROT TEXNOLOGIYALARINING O'RNI

description: Mazkur maqolada tibbiyot sohasida raqamlashtirish jarayonining asosiy yo‘nalishlari va ushbu jarayonda axborot texnologiyalarining tutgan o‘rni ilmiy jihatdan tahlil qilinadi. Bugungi kunda sog‘liqni saqlash tizimida elektron tibbiy hujjatlar, telemeditsina, sun’iy intellekt, katta hajmdagi ma’lumotlar (Big Data), mobil sog‘liqni saqlash (mHealth) va tibbiy axborot tizimlarining keng joriy etilishi tibbiy xizmatlar sifatini sezilarli darajada oshirmoqda. Maqolada raqamli texnologiyalarning diagnostika, davolash, profilaktika va boshqaruv jarayonlariga ta’siri yoritilgan. Tadqiqot davomida ilmiy adabiyotlar tahlili, qiyosiy va tizimli yondashuv usullaridan foydalanildi. Olingan natijalar axborot texnologiyalarining tibbiyotda qo‘llanilishi inson omilidan kelib chiqadigan xatoliklarni kamaytirish, resurslardan samarali foydalanish hamda bemorlar uchun qulaylik yaratishda muhim ahamiyatga ega ekanini ko‘rsatadi. Sog‘liqni saqlash amaliyotiga axborot texnologiyalarining joriy etilishi  shifokorlar va bemorlar o‘rtasidagi o‘zaro munosabatlarning shakl va usullarini, diagnostika va  davolash jarayonlarini, kasalliklarning oldini olish va sog‘lomlashtirish usullarini o‘zgartiradi.  Keksa va yosh foydalanuvchilar hamda axborot texnologiyalaridan foydalanish imkoniyati va  undan foydalanish imkoniyatiga ega bo‘lgan jamiyatning boshqa qatlamlari o‘rtasida paydo  bo‘layotgan raqamli tafovutga e’tibor qaratiladi. Raqamli texnologiyalarni qo‘llashda  mas’uliyatning o‘ziga xos xususiyatlari ko‘rib chiqiladi.
DOI: 10.15468/2ywn3u
title: World distribution of the aquatic Oligochaeta

description: This is a database of published findings of aquatic Oligochaeta (Annelida, Clitellata) species, including the literature sources and distribution maps. Data on the Aphanoneura (Annelida, Polychaeta) and Branchiobdellida (Annelida, Clitellata) are included as well, since these worms have often been listed as oligochaetes. The database is still in progress. Registration of findings from territory of the former USSR will be completed in 2017. In the subsequent years, data from the remaining world will be treated in alphabetical order of the authors of publications. Coordinates of the species occurrences in water bodies are found by author from literature or by the aid of Internet.
DOI: 10.15468/dl.7hpd8u
title: Occurrence Download

description: A dataset containing 2064 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polistes olivaceus"
 ]
}

 The dataset includes 2064 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003057-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18438536
title: РОЛЬ РУССКОГО ЯЗЫКА В ЖИЗНИ ОБЩЕСТВО

description: В статье рассматривается роль русского языка в жизни современного общества. Анализируются основные функции русского языка как средства межнационального и международного общения, языка образования, науки, культуры и средств массовой информации. Особое внимание уделяется социальной и практической значимости русского языка, его влиянию на формирование духовных ценностей и общественного сознания. Подчёркивается необходимость сохранения и развития русского языка в условиях глобализации и цифровизации.
DOI: 10.5281/zenodo.18438537
title: РОЛЬ РУССКОГО ЯЗЫКА В ЖИЗНИ ОБЩЕСТВО

description: В статье рассматривается роль русского языка в жизни современного общества. Анализируются основные функции русского языка как средства межнационального и международного общения, языка образования, науки, культуры и средств массовой информации. Особое внимание уделяется социальной и практической значимости русского языка, его влиянию на формирование духовных ценностей и общественного сознания. Подчёркивается необходимость сохранения и развития русского языка в условиях глобализации и цифровизации.
DOI: 10.5281/zenodo.18427051
title: مادٔه تاریک به مثابه انرژی گرمایی خودتنظیم شونده گرانشی

description: مادٔه تاریک یکی از بنیادیترین مسائل حل نشدٔه کیهان شناسی مدرن است. در این چارچوب، فرض نمیشود که مادٔه تاریک ذره ای جدید باشد، بلکه به عنوان فازی از انرژی گرمایی–حجمی در نظر گرفته میشود که به دلیل آستانه های فیزیکی خاص، از برهمکنش تابشی و ترمودینامیکی با مادٔه باریونی بازمی ماند. این رویکرد، نیاز به معرفی ذرات بنیادی فرضی و ناشناخته را که مشخصات آنها صرفاً از روی اثرات گرانشیشان استنباط میشود، از بین میبرد و به جای آن، بر خواص ترمودینامیکی و گرانشی یک فاز خاص از انرژی تمرکز میکند.
DOI: 10.5281/zenodo.18427052
title: مادٔه تاریک به مثابه انرژی گرمایی خودتنظیم شونده گرانشی

description: مادٔه تاریک یکی از بنیادیترین مسائل حل نشدٔه کیهان شناسی مدرن است. در این چارچوب، فرض نمیشود که مادٔه تاریک ذره ای جدید باشد، بلکه به عنوان فازی از انرژی گرمایی–حجمی در نظر گرفته میشود که به دلیل آستانه های فیزیکی خاص، از برهمکنش تابشی و ترمودینامیکی با مادٔه باریونی بازمی ماند. این رویکرد، نیاز به معرفی ذرات بنیادی فرضی و ناشناخته را که مشخصات آنها صرفاً از روی اثرات گرانشیشان استنباط میشود، از بین میبرد و به جای آن، بر خواص ترمودینامیکی و گرانشی یک فاز خاص از انرژی تمرکز میکند.
DOI: 10.15468/dl.zdzupf
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thysanostemon fanshawei",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003058-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.