cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.50kt0/5
title: Folder RNAseq analysis

description: This folder contains RNAseq data analysis for A. phagocytophilum-infected and uninfected nymphs, guts and salivary glands samples replicates 1 and 2.
DOI: 10.5061/dryad.50kt0/6
title: File Sample_Tissues_Ixo_all_samples.fastq.zip

description: This file contains the reads from I. scapularis adult female tissue samples replicates 1 and 2 (FASTQ.ZIP).
DOI: 10.5061/dryad.50kt0/7
title: File Sample_Nymphs_Ixo_all_samples.fastq.zip

description: This file contains the reads from I. scapularis nymph samples replicates 1 and 2 (FASTQ.ZIP).
DOI: 10.5061/dryad.517jv/1
title: Final competition population time series

description: Population counts across all samples for T. castaneum and T. confusum during the competition experiment. A key to the spreadsheet is included in the file.
DOI: 10.5061/dryad.517jv/2
title: T castaneum control populations

description: Population counts for T. castaneum during the single species experiment.
DOI: 10.5061/dryad.517jv/3
title: T confusum control populations

description: Population counts across all samples for the T. confusum single species experiment.
DOI: 10.5061/dryad.558qf/1
title: Data for the observtional field experiment, controlled field experiment, and the microcosm experiment
DOI: 10.5061/dryad.5pt92/1
title: Gold Standard Data

description: Expert classifications for 4,149 image sets. Unlike Snapshot Serengeti volunteers, experts were allowed to indicate if a capture event was impossible to identify. Fields are as follows: CaptureEventID: Same indicator as in the raw and reduced classification data; NumSpecies: The number of species in this capture event; 	Species: One of the 48 possibilities or “impossible"; Count: Number of individuals, estimated as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11-50 or 51+.
DOI: 10.5061/dryad.5pt92/6
title: Operation Dates

description: The dates that each camera was active and functioning properly, extracted from the image EXIF data as the first and last dates of valid photographs on a given SD card. Valid photographs are defined as those taken while the camera was secured on the tree pointing outwards (in contrast to photos taken after a camera was torn down and facing the ground).
DOI: 10.5061/dryad.5pt92/7
title: Consensus classifications and metadata

description: We applied the plurality algorithm (described in the manuscript) to the raw classification data to produce a single classification per capture event, accompanied by measures of uncertainty and difficulty. Each species classified in a single capture event receives its own record and species-specific measures of uncertainty. Metadata (data/time & location) are included to facilitate ecological analyses. This dataset excludes all images retired as “blank.”
DOI: 10.5061/dryad.5pt92/8
title: Images

description: URL information for retrieving each image; 1 record per image. All images in this data descriptor can be accessed athttps://snapshotserengeti.s3.msi.umn.edu/ by appending the URL_Info field. For example, appending the value ‘S1/B04/B04_R1/S1_B04_R1_PICT0012.JPG’ yields the full URL:https://snapshotserengeti.s3.msi.umn.edu/S1/B04/B04_R1/S1_B04_R1_PICT0012.JPG. Pasting this value into a browser will display the image in the browser.
DOI: 10.5061/dryad.5pt92/9
title: Raw classification data

description: Raw classification dataset; 1 record per unique user, capture event, and species. Includes images retired as “Blank” and “Blank_consensus.”
DOI: 10.5061/dryad.6k740/1
title: Probe set for the target enrichment experiment

description: Four-column SureSelect probe template file: (1) TargetID represents the genomic target that is intended for capture; (2) ProbeID provides a means for you to identify your probes; (3) Sequence is the actual sequence of the synthesized probe;(4) Replication determines how many times a probe will be replicated in the library.
DOI: 10.5061/dryad.6k740/2
title: Final contig set

description: Fasta sequences of the final contig set (378 BAC contigs and 891 cDNA contigs) and a descriptive file containing the name of each contig, its length and type (BAC or cDNA).
DOI: 10.5061/dryad.6k740/3
title: Variants files (VCF)

description: Three VCF files were used in this study: (1) SNP_GQ20_20%missing for FST analyses; (2) SNP_GQ30_20%missing for genealogies; (3) SNP_GQ20_0%missing for multivariate analyses. Only SNPs have been called.
DOI: 10.5061/dryad.6k740/4
title: FST results

description: FSTmax and FST90 of each contig are given for the intraspecific comparisons: (1) M. trossulus Europe vs America; (2) M. edulis Europe vs America; (3) M. galloprovincialis Atlantic vs Mediterranee; (4) M. galloprovincialis Atlantic External vs Internal; (5) M. galloprovincialis Mediterranee West vs East; (6) M. edulis Europe External vs Internal
DOI: 10.5061/dryad.8942f/1
title: Cliona microsatellite file

description: 435 individual Cliona are genotyped at 10 species-specific microsatellite loci. Location site of each individual is also included in the file.
DOI: 10.5061/dryad.8qv09/1
title: Sample dataset for one dog

description: Includes: structural image, ROIs, condition timing files, concatenated raw fMRI scans, concatenated smoothed motion-corrected normalized fMRI scans, stats files. For use with AFNI.
DOI: 10.5061/dryad.c6jh2/1
title: Primer_information

description: This file provides information for all primers used in this study.
DOI: 10.5061/dryad.c6jh2/2
title: Behavioural data

description: This file provides behavioural raw data (mate choice tests). In particular, it provides for each actor of the choice the individual IDs (sample_ID1 and sample_ID2), the subspecies of origin, the sex, the geographical origin (field "Sample"), the trapping site ID with its geographical coordinates (in degrees), the time spent sniffing each stimulus (musculus or domesticus urinary signals), and the difference in time spent sniffing the two stimuli.
DOI: 10.5061/dryad.c6jh2/3
title: Genotyping_raw_data_main_experiment

description: This file provides all raw genotyping data for the main experiment (1248 loci). For each primer pair and sample, the different rows represent the different peaks present in the pool before any filtering was applied. For each peak, peak size, peak height and peak area is provided.
DOI: 10.5061/dryad.c6jh2/4
title: Genotyping_raw_data_for_HI_estimation

description: This file provides genotyping data of the 21 diagnostic markers (insertion/deletion polymorphisms of transposable elements, columns C to W) used to estimate the hybrid index of each individual used in this study. More information on the markers used and applied genotyping procedure can be found in Latour et al 2015 Proceeedings of the Royal Society of London.
DOI: 10.5061/dryad.ch1bb/25
title: Site 30-2_rings_diag
DOI: 10.5061/dryad.ch1bb/26
title: Site 31-1_establishment
DOI: 10.5061/dryad.ch1bb/27
title: Site 31-1_rings_diag
DOI: 10.5061/dryad.ch1bb/28
title: Site 36-1_establishment
DOI: 10.5061/dryad.ch1bb/29
title: Site 36-1_rings_diag
DOI: 10.5061/dryad.ch1bb/30
title: Site 36-2_establishment
DOI: 10.5061/dryad.ch1bb/31
title: Site 36-2_rings_diag
DOI: 10.5061/dryad.mp238/1
title: development_index

description: This data file describes the developmental stage of grasshoppers collected during field surveys.  Columns are as follows: Species: species name; TimePeriod: observation period in years; Elevation_m: site elevation in meters; JulianDate: Julian date of observation; DevelopmentIndex: the average developmental stage of the population with 1 to 5 representing the 1st to 5th instars and 6 respresenting adults; seDevelopmentIndex: the standard error of the development index.  Missing data are indicated with NAs.
DOI: 10.5061/dryad.mp238/2
title: proportional_composition

description: This data file describes the species composition of grasshoppers collected during field surveys. Columns are as follows: Species: species name; TimePeriod: observation period in years; Elevation_m: site elevation in meters; JulianDate: Julian date of observation; Proportion_xInstar: proportion of population within instar x.
DOI: 10.5061/dryad.mp238/3
title: rearing_data

description: This data file describes the mass and timing of Melanoplus sanguinipes reared in incubators in the lab at different temperatures. Columns are as follows: Elevation_m: site elevation in meters; Temperature_C: temperature in degrees Celsius; Mass_xInstar_g: average mass in grams at instar x; seMass_xInstar_g: the standard error of the mass in grams; Days_xInstar_g: average days until reaching instar x; seDays_xInstar_g: the standard error of the average days.
DOI: 10.5061/dryad.n36n6/23
title: Figure 26, Conus spurius and Conus humerosus

description: Unaltered, original digital images of specimens photographed under ultraviolet light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.
DOI: 10.5061/dryad.n36n6/24
title: Figure 27, Conus kaesleri

description: Unaltered, original digital images of specimens photographed under ultraviolet light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.
DOI: 10.5061/dryad.n36n6/25
title: Figure 28, Conus lombardii

description: Unaltered, original digital images of specimens photographed under ultraviolet light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.
DOI: 10.5061/dryad.n36n6/26
title: Figure 29, Conus carlottae

description: Unaltered, original digital images of specimens photographed under ultraviolet light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.
DOI: 10.5061/dryad.n36n6/27
title: Figure 30, Conus sp. 1 to Conus sp. 10

description: Unaltered, original digital images of specimens photographed under ultraviolet light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.
DOI: 10.5061/dryad.nb535/1
title: Data for invasion experiments

description: Data for time series invasion experiments of S. aureus into S. epidermidis and the reciprocal invasion.
DOI: 10.5061/dryad.qc220/1
title: Hopwood et al 2015_JEB_data

description: Dataset accompanying Hopwood et al. 2015 Journal of Evolutionary Biology
DOI: 10.5061/dryad.r24b1/4
title: Fluorescent Protein Analysis Methodology

description: This archive file contains the files required for the fluorescent protein spectral analysis. The input file Wounding_Aaspera_fl.csv containing the raw fluorescence values and sample protein concentration is provided along with the reference fluorescent protein data file modelspecs_interp_25sh.csv (based on the spectrum of purified Acropora millepora fluorescent proteins) and the spectral decomposition script specs_regression_WF.R.    The reference fluorescent protein data and the script were provided by Mikhail Matz.
DOI: 10.5061/dryad.ss2g7/1
title: Foot landmark data file

description: Text file containing x,y coordinates of landmarks used to characterize foot shape.  File in TPS format
DOI: 10.5061/dryad.vb53h/1
title: fry for sas analysis

description: These data provide the information on the number of fry of each genotype collected each day from each aquarium.  Group is referred to as aquarium in the paper; number of fry refers to how many fry of each type were collected; pctredsires is the %red male category of which there are five types (25%, 33$, 50%, 66%, and 75%; frytype is either red or wild-type; collection refers to the number of days that data were collected for each group
DOI: 10.5061/dryad.15rk0/10
title: TPM1.0.genes.counts.matrix.TMM_normalized

description: FPKM read counts of contigs from RNA-Seq portion of study. This file is referenced in the R scripts also included in this Dryad accession.
DOI: 10.5061/dryad.15rk0/11
title: README.txt

description: README file that explains the contents of this submission.
DOI: 10.5061/dryad.15rk0/3
title: RedpollOnly_m5M5n5r0.8_20kSNPs

description: Genepop formatted file that contains information for 20,712 SNPs generated using Stacks with a ddRAD-Seq pipeline. Stacks was run with -m 5, -M 5, -n 5
DOI: 10.5061/dryad.15rk0/6
title: RNASeqShellScripts

description: This zip file contains shell scripts used in the RNA-Seq portion of this study.
DOI: 10.5061/dryad.15rk0/7
title: ddRADShellScripts

description: This file contains shell scripts associated with the ddRAD-Seq portion of this study
DOI: 10.5061/dryad.15rk0/8
title: RScripts

description: This file contains R Scripts used to analyze the ddRAD-Seq and RNA-Seq portions of this study.
DOI: 10.5061/dryad.15rk0/9
title: RedpollSNAPP_200loci

description: Output of SNAPP species tree analysis run using 200 loci.
DOI: 10.5061/dryad.24061/1
title: Combined data

description: Combined data set for sequential and simultaneous choice trials.  File includes all behavioral counts and all recorded fish measurements (including color measures). Data separated into sequential choice trials, simultaneous choice trials, and con-specific male sequential choice trials.
DOI: 10.5061/dryad.266g4/1
title: DRYAD-luscombe-reanalysis

description: This file contains all data, python, and R scripts needed to replicate our analysis of synonymous substitutions in a long-term evolution experiment at 40,000 generations.
DOI: 10.5061/dryad.2c8m3/1
title: Mating Data

description: This file contains the results of mate choice trials in Saccharomyces paradoxus strains from three different populations/groups. Each mating trial contained two spores from one strain (the chooser strain) and one spore from another strain (the option strain). If the two spores from one strain mated, it was classified as inbreeding; if two spores from different strains mated, it was classified as outcrossing. The data are in columns with the following headers: Chooser Group; Option Group; Chooser Strain; Option Strain; Number of Outcrossing; Number of Inbreeding; Total Trials.
DOI: 10.5061/dryad.2c8m3/2
title: SpSporeViability

description: These are spore viability data for individual Saccharomyces paradoxus strains, as well as crosses between them. There are numerous columns with different identifiers (genetic group, strain, within/between population, etc.) for different analyses.
DOI: 10.5061/dryad.2c8m3/3
title: GerminationTiming

description: This file contains data collected by monitoring the amount of time it took for spores from different Saccharomyces paradoxus strains to germinate. Each column is a different strain (headers included).
DOI: 10.5061/dryad.4db42/1
title: Finiguerra et al 2015_Data_Sharing_PLoS ONE

description: excel file with data.
DOI: 10.5061/dryad.652vq/1
title: Genepop File

description: This file contains all microsatellite data for all samples/individuals. The year the samples were collected is included as well as the life history type (either freshwater resident (res) or freshwater isolated (iso) forms - note that no code is used for anadromous individuals which constitutes the majority of the samples).
DOI: 10.5061/dryad.674jf/1
title: data_Terui2014_EcolEvol
DOI: 10.5061/dryad.83tg7/1
title: Data used for the statistical analyses on secondary sexual traits in palmate newt
DOI: 10.5061/dryad.8bn8p/1
title: Dataset Chacma Baboon Vocal Repertoire

description: Parameterized dataset of chacma baboon vocal repertoire. Calls have been fast Fourier transformed into their frequency-time domain using Avisoft SASLab Pro. Acoustic features have been extracted with LMA 2012.
DOI: 10.5061/dryad.8sb8v/1
title: vanProosdij_etal_2015_Ecography_A4_Datapreparation_script

description: This R script is used to prepare environmental data including climate, soil and altitudinal data. By specifying the study area, data layers are cropped accordingly and this script is applicable to any study area and climate change scenario.
DOI: 10.5061/dryad.8sb8v/2
title: vanProosdij_etal_2015_Ecography_A5_species_presence_script

description: This R script is used to define simulated species. It can be applied to a virtual study area but also to any real study area.
DOI: 10.5061/dryad.8sb8v/3
title: vanProosdij_etal_2015_Ecography_A6_Virtualstudyarea_script

description: This R script is used to run the analysis and identify the minimum number of records required to produce accurate Species Distribution Models. It is applicable to any taxonomic clade or group, study area or climate change scenario.
DOI: 10.5061/dryad.8sb8v/4
title: vanProosdij_etal_2015_Ecography_A7_Africanstudyarea_script

description: This R script is used to run the analysis and identify the minimum number of records that is required to produce accurate Species Distribution Models. It is applicable to any taxonomic clade or group, study area or climate change scenario.
DOI: 10.5061/dryad.8sb8v/5
title: vanProosdij_etal_2015_Ecography_A8_nullmodel_script

description: This R script generates null models that are used to evaluate Species Distribution Models. The script is applicable to any taxonomic clade or group, study area or climate change scenario.
DOI: 10.5061/dryad.91d70/1
title: Yearly Black-tailed Godwit Return Rates

description: This data includes data on whether or not an individual godwit that was seen in one year, returned to their breeding grounds the following year. All data is categorized in reference to individual godwits (signified by their Colour Code). The initial year in which an individual was seen is not marked, only the following year is denoted with a 0 (not seen) or a 1 (seen). It also includes a column denoting each molecular individual's sex--0 (unknown), 1 (female), and 2 (male).
DOI: 10.5061/dryad.91d70/2
title: 2013 March-May Resightings of Black-tailed Godwits

description: This file includes the date and location of all resightings of individually colour-marked Black-tailed Godwits from March-May 2013 north of Iberia. The colour codes listed in this file match up with those used in all other files for this publication.
DOI: 10.5061/dryad.9jd86/1
title: Field enclosure mating events

description: Data concerning the relevant traits of the individuals in the field enclosure, the characteristics of the mating events between these individuals, and the resulting paternity outcomes.
DOI: 10.5061/dryad.b13f4/1
title: Palopoli_remanei_lifehistory

description: Total reproduction and lifespan (age at death) for three different stains of C. remanei mated in a series of factorial crosses. Includes lifespans for virgin females.
DOI: 10.5061/dryad.b13f4/2
title: Palopoli_remanei_spermcompetition

description: Sperm competition among three strains of C. remanei mated against three female backgrounds.
DOI: 10.5061/dryad.b13f4/3
title: Palopoli_remanei_sperm_size

description: Sperm size measurements for three strains of C. remanei
DOI: 10.5061/dryad.b13f4/4
title: Palopoli_elegans_spermcompetition

description: Sperm competition results for C. elegans lines evolved in the presence of high and low male-male competition
DOI: 10.5061/dryad.b13f4/5
title: Palopoli_elegans_hermaphroditemortality

description: Survival of hermaphrodites living with males evolved under conditions of high and low male-male competition
DOI: 10.5061/dryad.b13f4/6
title: Palopoli_elegans_sperm_size

description: Sperm size measures for C. elegans males evolved under conditions of high and low male-male competition
DOI: 10.5061/dryad.b13f4/7
title: Palopoli_elegans_spiculeinsertion

description: Duration of spicule insertion for C. elegans males evolved under conditions of high and low male-male competition.
DOI: 10.5061/dryad.b7156/1
title: Online Appendix 1 - SNP Analysis Pipeline

description: Text file containing commands and software used to obtain SNPs from our UCE reads.
DOI: 10.5061/dryad.c6jh2/5
title: Genotyping_raw_data_pooling_validation_experiment

description: This file provides all genotyping raw data for the pooling strategy validation experiment. Sheet 1 shows individual raw genotypes (14 individuals typed separately) and sheet 2 shows the pool raw genotypes.
DOI: 10.5061/dryad.c6jh2/6
title: Genotyping_raw_data_outlier_validation_experiment

description: This file provides raw genotyping results for individual typing of outlier microsatellite loci.
DOI: 10.5061/dryad.ff66h/1
title: Fasta File of Sd-RanGAP duplication

description: Alignment of Sd-RanGAP duplication from 52 SD chromosomes.
DOI: 10.5061/dryad.g464v/1
title: Plant biomass and Fungal DNA abundance

description: Plant biomass and AM fungal abundance in roots data were collected from a 12 week glasshouse experiment. Pot=Pot number, Plant=Plant community: (Tri = Trifolium monoculture, Lol = Lolium monoculture, Pla = Plantago monoculture, Mix = mixture of all three plants), AMF=AMF community: (Gmoss = F. mosseae monoculture, Gint = R. irregulare monoculture, Gclar = C. claroideum monoculture, Div = D. celata monoculture; All = Mix of All four fungi), SownTri=Number of sown Trifolium plants, SownPla=Number of sown Plantago plants, SownLol=Number of sown Lolium plants, NumTri=Number of Trifolium plants harvested, NumPla=Number of Plantago plants harvested, NumLol=Number of Lolium plants harvested, TriBM=Trifolium biomass (in grams), PlaBM=Plantago biomass (in grams), LolBM=Lolium biomass (in grams), InocGmoss=grams of F. mosseae inocula added to potInocGint=grams of R. irregulare inocula added to potInocGclar=grams of C. claroideum inocula added to potInocDcela=grams of D. celata inocula added to potGmossDNA=qPCR detected number of DNA copies of F. mosseae per mg of plant root, GintDNA=qPCR detected number of DNA copies of F. irregulare per mg of plant root, GclarDNA=qPCR detected number of DNA copies of C. claroideum per mg of plant root, DcelaDNA=qPCR detected number of DNA copies of D. celata per mg of plant root
DOI: 10.5061/dryad.kh312/1
title: Raw values of BMR

description: File with raw results of the measurements of basal metabolic rate performed on voles from generation 11 of the selection experiment
DOI: 10.5061/dryad.r0h7s/1
title: Aggression data

description: Field data: aggression by territory holding fish towards model intruders. Sex and length of the territory holders, water depth at the territory, and model intruder type are also listed.
DOI: 10.5061/dryad.r0h7s/2
title: Color scores

description: R + G + B color scores for the model ("dummy") intruders used in the experiment.