cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.whuy9t
title: Occurrence Download

description: A dataset containing 359 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Records of Carnivora within the territory of Chornobyl Exclusion Zone, Ukraine, during 2012-2023"
 ]
}

 The dataset includes 359 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000799-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.43j02
title: Data from: Male-bias in distributions of additive genetic, residual, and phenotypic variances of shared traits

description: Despite a shared genetic architecture between males and females, sexual
 differences are widespread. The extent of this shared genetic
 architecture, reflected in the intersexual genetic correlation, has
 previously been correlated with the extent of phenotypic sexual dimorphism
 in shared traits. However, the magnitude of the difference in sex-specific
 additive genetic variances may also fuel sexual dimorphism. To explore the
 correlation between additive genetic variance dimorphism and phenotypic
 dimorphism, we conducted a literature search. We targeted traits expressed
 in both sexes and excluded sex-limited traits. The mean difference between
 the sexes in additive genetic variance was not significantly different
 from 0. However, the distribution of the sexual difference in additive
 genetic variance had a significant male-biased skew. This pattern persists
 even after removing traits explicitly related to reproduction.
 Furthermore, male traits had more residual and phenotypic variance than
 homologous female traits (as measured by both the mean and the skew), and
 this difference was not necessarily due to the difference between sexual
 traits and nonsexual traits. We found no evidence that sex chromosome
 system could explain sex differences in additive genetic, nonadditive
 genetic, or phenotypic variances. Finally, we found a significant
 correlation between the extent of sexual dimorphism in additive genetic
 variances and the extent of phenotypic sexual dimorphism. Understanding
 why traits have sex-specific patterns of variation awaits further
 investigation.
description: Male-bias in
 distributions of additive genetic, residual, and phenotypic variances of
 shared traitsThis file contains data
 collected from previously published papers.WymanAndRowe2014_Dryad.txt
DOI: 10.5061/dryad.b32q9
title: Data from: Elevated CO2 induces substantial and persistent declines in forage quality irrespective of warming in mixedgrass prairie

description: Increasing atmospheric [CO2] and temperature are expected to affect the
 productivity, species composition, biogeochemistry, and therefore the
 quantity and quality of forage available to herbivores in rangeland
 ecosystems. Both elevated CO2 (eCO2) and warming affect plant tissue
 chemistry through multiple direct and indirect pathways, such that the
 cumulative outcomes of these effects are difficult to predict. Here, we
 report on a 7-year study examining effects of CO2 enrichment (to 600 ppm)
 and infrared warming (+1.5°C day/3°C night) under realistic field
 conditions on forage quality and quantity in a semiarid, mixedgrass
 prairie. For the 3 dominant forage grasses, warming effects on in vitro
 dry matter digestibility (IVDMD) and tissue [N] were detected only in
 certain years, varied from negative to positive, and were relatively
 minor. In contrast, eCO2 substantially reduced IVDMD (2 most abundant
 grasses) and [N] (all 3 dominant grass species) in most years, except the
 two wettest years. Furthermore, eCO2 reduced IVDMD and [N] independent of
 warming effects. Reduced IVDMD with eCO2 was related both to reduced [N]
 and increased acid detergent fiber (ADF) content of grass tissues. For the
 6 most abundant forage species (representing 96% of total forage
 production), combined warming+eCO2 increased forage production by 38% and
 reduced forage [N] by 13% relative to ambient climate. Although the
 absolute magnitude of the decline in IVDMD and [N] due to combined
 warming+eCO2 may seem small (e.g. from 63.3 to 61.1% IVDMD and 1.25 to
 1.04% [N] for Pascopyrum smithii), such shifts could have substantial
 consequences for the rate at which ruminants gain weight during the
 primary growing season in the largest remaining rangeland ecosystem in
 North America. With forage production increases, declining forage quality
 could potentially be mitigated by adaptively increasing stocking rates,
 and through management such as prescribed burning, fertilization at low
 rates, and legume interseeding to enhance forage quality.
description: Forage quality and
 quantity per plot and yearData file contains 4
 measurements of forage quality - In vitro dry matter digestibility
 (IVDMD), acid detergent fiber (ADF), neutral detergent fiber (NDF), and
 nitrogen concentration (%N) and a measure of per plot peak biomass for
 each of 3 grass species in the study.Forage_Quality_and_Quantity_Dryad.xlsx
DOI: 10.5061/dryad.md310
title: Data from: Manipulating two olfactory cues causes a biological control beetle to shift to non-target plant species

description: Olfactory cues can determine the host preferences of herbivorous insects,
 but their role in host shifting is unclear. Host specificity and the
 potential for host shifts are important criteria for screening and
 post-release evaluation of biological control agents for invasive plants.
 However, the role of olfactory cues in mediating host shifts in biological
 control agents is not well understood. To investigate the role of
 olfactory cues in host selection of a reportedly monophagous flea beetle
 (Agasicles hygrophila), an important biocontrol agent for invasive
 alligator weed (Alternanthera philoxeroides), we extracted and analysed
 the volatiles produced by the host-plant A. philoxeroides and the non-host
 plants Alternanthera sessilis, Beta vulgaris and Amaranthus mangostanus.
 Moreover, we used electrophysiological techniques, behavioural bioassays
 and field trials to test the antennal responses and behavioural
 preferences of A. hygrophila to combinations of different plant volatiles
 and treatments, and pure compounds in different dosages and combinations.
 We show that A. hygrophila female beetles indeed use olfactory cues to
 select plants for feeding and oviposition and that the survivorship of
 larvae on the second preferred non-host plant A. sessilis, a close
 relative of the first preferred host plant A. philoxeroides, was over 75%
 in a field trail. Although female beetles responded to many volatile
 compounds from host and non-host plants, (E)-4,8-dimethyl-1,3,7-nonatriene
 (DMNT) positively encouraged the beetle's feeding and oviposition
 preferences, whereas (Z)-3-hexenol displayed repellent effect. Remarkably,
 complementation assays with (Z)-3-hexenol on host plant or DMNT on
 non-host plants significantly shifted A. hygrophila host preferences to
 non-host plants and resulted in oviposition and egg hatching on the
 non-host plant A. sessilis in field trials. Synthesis. We demonstrate an
 olfactory mechanism by which a specialized herbivorous beetle uses the
 ratio of two common plant volatiles, (E)-4,8-dimethyl-1,3,7-nonatriene and
 (Z)-3-hexenol, to discriminate between its host and non-host plants in
 nature. This study highlights an important mechanism by which olfactory
 cues could lead to undesired host range expansion in biocontrol agent,
 thus representing an important warning of the potential for a host shift
 and development of invasiveness in a common biocontrol agent, the flea
 beetle.
description: Data of the study on
 Agasicles hygrophila flea beetleThis dataset is
 deposited by authors of manuscript entitle "Manipulating two
 olfactory cues causes a biological control beetle to shift to non-target
 plant species", which would appear in Journal of Ecology. The dataset
 includes all raw data of table 1-3, figures 1-4, supplementary Figures
 S1-S3, and Supplementary Tables S1-S6 are included.Data.xlsx
DOI: 10.5061/dryad.8mq2q
title: Data from: Why is living fast dangerous? Disentangling the roles of resistance and tolerance of disease

description: Primary axes of host developmental tempo (HDT; e.g., large-small body size
 continuum; slow-quick return leaf continuum) represent latent biological
 processes and are increasingly used to a priori identify hosts that
 contribute disproportionately more to pathogen transmission. HDT's
 influence on host contributions to transmission depends on how HDT
 influences both resistance and tolerance of disease. Here, we use
 structural equation modeling to address known limitations of conventional
 measures of resistance and tolerance. We first provide a general
 'resistance-tolerance' meta-model, from which system-specific
 models can be derived. We then develop a model specific to a group of
 vector-transmitted viruses that infect hundreds of grass species
 worldwide. We tested the model using experimental inoculations of six
 phylogenetically paired grass species. We found 1) host traits covaried
 according to a prominent HDT axis, the slow-quick continuum; 2) infection
 caused a greater reduction in the performance of quick-returns and
 &gt;80 percent of that greater impact was explained by lesser
 resistance; 3) no resistance-tolerance tradeoff; and 4) phylogenetic
 control was necessary to measure the slow-quick continuum, resistance, and
 tolerance. These results support the conclusion that HDT's main
 influence on host contributions to transmission is via resistance. More
 broadly, this study provides a framework for quantifying Hit's
 influence on host contributions to transmission.
description: CroninetalAMANT2014_Fig2_and_Fig3CroninetalAMANT2014_OnlineApp_FigA2CroninetalAMNAT14_OnlineApp_FigB1
DOI: 10.5061/dryad.n0v50
title: Data from: Multi-locus sequence data reveal a new species of coral reef goby (Teleostei: Gobiidae: Eviota), and evidence of Pliocene vicariance across the Coral Triangle

description: Here, multi-locus sequence data are coupled with observations of live
 colouration to recognize a new species, Eviota punyit from the Coral
 Triangle, Indian Ocean and Red Sea. Relaxed molecular clock divergence
 time estimation indicates a Pliocene origin for the new species, and the
 current distribution of the new species and its sister species Eviota
 sebreei supports a scenario of vicariance across the Indo-Pacific Barrier,
 followed by subsequent range expansion and overlap in the Coral Triangle.
 These results are consistent with the ‘centre of overlap’ hypothesis,
 which states that the increased diversity in the Coral Triangle is due in
 part to the overlapping ranges of Indian Ocean and Pacific Ocean faunas.
 These findings are discussed in the context of other geminate pairs of
 coral reef fishes separated by the Indo-Pacific Barrier.
description: Figure S3 - COI gene
 treeMaximum clade
 credibility gene tree from MrBayes analysis of COI data. Support values
 are posterior probabilities.Sebreei COI
 tree.treFigure S2 - PTR gene
 treeMaximum clade
 credibility gene tree from MrBayes analysis of Ptr nuclear data. Support
 values are posterior probabilities.Sebreei PTR
 tree.treFigure S1 - Maximum
 likelihood bootstrap treeMaximum likelihood
 analysis of concatenated dataset. Support values are bootstrap
 scores.ML
 tree supplementary
DOI: 10.5061/dryad.gv38r
title: Data from: Cost effectiveness of the New Zealand diabetes in pregnancy guideline screening recommendations

description: Objective: To compare the cost-effectiveness of 2 possible screening
 strategies for gestational diabetes mellitus (GDM) from the perspective of
 the New Zealand health system, developed as part of a gestational diabetes
 guideline. Design: A decision analytic model was built comparing 2-step
 screening (glycated haemoglobin (HbA1c) test at first booking and a 2 h
 75 g oral glucose tolerance test (OGTT) as a single test at 24–28 weeks)
 with 3-step screening (HbA1c test at first booking and a 1 h glucose
 challenge test (GCT) followed by a 2 h 75 g OGTT when indicated from
 24–28 weeks) using a 9-month time horizon. Setting: A hypothetical cohort
 of 62 000 pregnant women in New Zealand. Methods: Probabilities, costs and
 benefits were derived from the literature, and supplementary data was
 obtained from National Women's Annual Clinical Reports. Main outcome
 measures, screening and treatment costs (NZ$2013) and effect on health
 outcomes (incidence of complications). Results: The total cost for both
 strategies under baseline assumptions shows that the 2-step screening
 strategy would cost NZ$1.38 m more than the 3-step screening strategy
 overall. The additional cost per case detected was NZ$12 460 per case. The
 model found that the 2-step screening strategy identifies 12 more women
 with diabetes and 111 more women with GDM when compared against the 3-step
 screening strategy. We assessed the effect of changing the sensitivity and
 specificity of the OGTT. The baseline model assumed that the 2 h 75 g OGTT
 has a sensitivity and specificity of 95%. The 2-step strategy becomes more
 cost-effective when the diagnostic accuracy measures are improved.
 Conclusions: Adopting a 2-step strategy would moderately increase the
 number of GDM cases detected at the same time as moderately increasing the
 number of women with false negatives at a significant cost to the health
 system. Further evidence on the benefits of the 2 different approaches
 would be welcome.
description: Cost effectiveness of
 the NZ DIP guideline screening recommendations FINALThis is the decision
 analytic model designed to compare the cost effectiveness of the 2-step
 and 3-step screening strategies described in the
 article.
DOI: 10.5061/dryad.3fp18
title: Data from: Genetic and environmental effects on the morphological asymmetry in the scale-eating cichlid fish, Perissodus microlepis

description: The scale-eating cichlid fish, Perissodus microlepis, from Lake Tanganyika
 are a well-known example of an asymmetry dimorphism because the mouth/head
 is either left-bending or right-bending. However, how strongly its
 pronounced morphological laterality is affected by genetic and
 environmental factors remains unclear. Using quantitative assessments of
 mouth asymmetry, we investigated its origin by estimating narrow-sense
 heritability (h2) using midparent–offspring regression. The heritability
 estimates [field estimate: h2 = 0.22 ± 0.06, P = 0.013; laboratory
 estimate: h2 = 0.18 ± 0.05, P = 0.004] suggest that although variation in
 laterality has some additive genetic component, it is strongly
 environmentally influenced. Family-level association analyses of a
 putative microsatellite marker that was claimed to be linked to gene(s)
 for laterality revealed no association of this locus with laterality.
 Moreover, the observed phenotype frequencies in offspring from parents of
 different phenotype combinations were not consistent with a previously
 suggested single-locus two-allele model, but they neither were able to
 reject with confidence a random asymmetry model. These results reconcile
 the disputed mechanisms for this textbook case of mouth asymmetry where
 both genetic and environmental factors contribute to this remarkable case
 of morphological asymmetry.
description: Lee et al (2015) Ecol
 Evol_P. microlepis Data-setFrequency distributions
 of jaw (mouth) bending angles of lab-bred and wild-caught P. microlepis
 juveniles,repeatability estimates of jaw (mouth) bending angles,
 jaw-bending angles of Astatotilapia burtoni juveniles, phenotype
 frequencies, heritability of lab- and wild-broods, and association
 analyses in five wild-caught broods at a microsatellite locus
 UNH2101.Lee
 et al (2015) Ecol Evol_P.
 microlepis.zip
DOI: 10.5061/dryad.pd775
title: Data from: Does urbanization promote floral diversification? Implications from changes in herkogamy with pollinator availability in an urban-rural area

description: Although land-use changes such as urbanization have dramatically altered
 plant-pollinator interactions, little is known about their effects on
 pollen limitation and floral traits. In this study, we examined pollinator
 visit frequency, reproductive success, and floral trait measurements in 12
 populations of the annual andromonoecious Commelina communis in an
 urban-rural area. Pollinator and mate availability decreased significantly
 with developed land area around the study site. Most urbanized populations
 suffered from significant pollinator-limited male and/or female
 reproductive success. High fruit set in urbanized populations may suggest
 the presence of high reproductive assurance by selfing. The stigma height
 and degree of herkogamy significantly decreased with increased pollinator
 limitation. Petal length, anther height, and/or the pollen:ovule ratio
 tended to be low in pollinator- and mate-limited urban populations. One
 urban population with high pollinator availability had flowers with higher
 herkogamy and stigma height compared to rural populations. These results
 suggest that urbanization may provide diverse selective forces that could
 affect the phenotypic variation in floral traits.
description: DataUshimaru_etalFig2csv file for pollinator visitation dataDataUshimaru_etalFigs34csv file for pollen counting dataDataUshimaruetalFigs43csv file for floral trait measurements and pollen removal data
DOI: 10.5061/dryad.39tg5
title: Data from: Causes and consequences of repeatability, flexibility and individual fine-tuning of migratory timing in pike

description: 1. Many organisms undertake migrations between foraging and breeding
 habitats and while it is assumed that reproductive timing affects fitness,
 little is known about the degree of individual consistency, and about the
 causes and consequences of individual variation in migratory timing in
 organisms other than birds. 2. Here, we report on a 6-year mark–recapture
 study, including 2048 individuals, of breeding migration in anadromous
 pike (Esox lucius), an iteroparous top-predatory fish that displays homing
 behaviour. By repeated sampling across years at a breeding site, we first
 quantify individual variation both within and between breeding events and
 then investigate phenotypic correlates and fitness consequences of arrival
 timing to the breeding site. 3. Our data demonstrate that males arrive
 before females, that large males arrive later than small males, that the
 timing of breeding migration varies among years and that individuals are
 consistent in their timing across years relative to other individuals in
 the population. 4. Furthermore, data on return rates indicate that arrival
 time is under stabilizing viability selection, and that individuals who
 are more flexible in their timing of arrival during the first reproductive
 years survive longer compared with less flexible individuals. Finally,
 longitudinal data demonstrate that individuals consistently fine-tune
 their arrival timing across years, showing that the timing of arrival to
 breeding sites is influenced by experience. 5. These findings represent
 rare evidence of how between- and within-individual variations in
 migratory timing across breeding events are correlated with phenotypic and
 fitness traits in an ecologically important keystone species. Our results
 emphasize the importance of considering variation in migratory timing both
 between and within individuals in studies investigating the fitness
 consequences of migratory behaviour and have implications for future
 management.
description: Data for migratory
 timing of individual pike across yearsField data across six
 years of migratory timing (arrival date to a spawning stream) for
 anadromous pike in the Baltic sea.Data,
 JAE-2015-00034.xlsx
DOI: 10.5061/dryad.j8q34
title: Data from: Spatial distribution of flower color induced by interspecific sexual interaction

description: Understanding the mechanisms shaping the spatiotemporal distribution of
 species has long been a central concern of ecology and evolutionary
 biology. Contemporary patterns of plant assemblies suggest that sexual
 interactions among species, i.e., reproductive interference, lead to the
 exclusive distributions of closely related species that share pollinators.
 However, the fitness consequences and the initial ecological/evolutionary
 responses to reproductive interference remain unclear in nature, since
 reproductive isolation or allopatric distribution has already been
 achieved in the natural community. In Japan, three species of blue-eyed
 grasses (Sisyrinchium) with incomplete reproductive isolation have
 recently colonized and occur sympatrically. Two of them are monomorphic
 with white flowers, whereas the other exhibits heritable color
 polymorphism (white and purple morphs). Here we investigated the effects
 of the presence of two monomorphic species on the distribution and
 reproductive success of color morphs. The frequency and reproductive
 success of white morphs decreased in area where monomorphic species were
 abundant, while those of purple morphs did not. The rate of hybridization
 between species was higher in white morphs than in the purple ones.
 Resource competition and habitat preference seemed not to contribute to
 the spatial distribution and reproductive success of two morphs. Our
 results supported that color-dependent reproductive interference
 determines the distribution of flower color polymorphism in a habitat,
 implying ecological sorting promoted by pollinator-mediated reproductive
 interference. Our study helps us to understand the evolution and spatial
 structure of flower color in a community.
description: Data for morphology,
 fitness, frequency and colormorphology.txt includes
 the data used for PCA. fitness.txt includes the data on fruit set rate and
 the diameter of fruit. frequency.txt is the data derived from field
 survey. nec_col.txt and tepal_col includes the data on color of nectar
 guide and tepal, respectively.data.zip