cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7175267
title: Model output and plotting scripts to accompany "Canyon shape and erosion dynamics governed by channel-hillslope feedbacks"

description: This fileset contains all of the model output used to generate Figure 4, and its companions in the supporting information, from Glade, Shobe, Anderson, and Tucker (submitted).<br>These figures use output from the BlockLab landscape evolution model (https://doi.org/10.5281/zenodo.2584363). All model output required to generate Figure 4 from the manuscript, and the accompanying plots from the supporting information, is included here.<br><br>The model output consists of time series of topographic elevation for the channel (the entire channel profile) and three points along the hillslope, which are user-determined in the driver script when running the BlockLab model.<br>Three types of Python 2.7 scripts are presented here. The first, "reorganize_channel_elevation_timeseries.py", only needed if dealing with raw model output, aggregates channel elevation data from the many .npy binaries exported by the BlockLab model and exports this data as three .npy binaries, one for the complete elevation history of each of three chosen channel nodes. The same goes for "reorganize_channel_cover_timeseries.py", which serves the same function for extracting information about channel bed cover over time.<br><br>The third type of script, called for example "erosion_blocky_1_meter.py" (the file name changes for each model realization), plots the model output. "Erosion" figures consist of 10-year and 1000-year averaged erosion rates at three points on the channel and hillslope. "Cover" figures show channel erosion rates and channel cover fractions averaged over the same 10- and 1000-year moving windows.<br><br>Each .zip file contains a folder with the data and plotting scrips for a single model realization. Eight model realizations were presented in the paper: Four "blocky" simulations in which blocks of rock were delivered from a resistant caprock to the landscape, and four "control" simulations in which blocks of caprock immediately turned to soil upon their release. For each of these two scenarios, we tested four different values for the caprock thickness (and therefore block size): 0.1 m, 0.5 m, 0.8 m, and 1.0 m.<br>Please see the associated paper for more information about the model and parameter values.<br>
DOI: 10.6084/m9.figshare.7175267.v1
title: Model output and plotting scripts to accompany "Canyon evolution governed by channel-hillslope feedbacks"

description: This fileset contains all of the model output used to generate Figure 4 in Glade, Shobe, Anderson, and Tucker (submitted).<br>The model output consists of time series of topographic elevation for the channel (the entire channel profile) and three points along the hillslope, which are user-determined in the driver script when running the BlockLab model.<br>Three Python 2.7 scripts are presented here. The first, "reorganize_channel_elevation_timeseries.py", only needed if dealing with raw model output, aggregates channel elevation data from the many .npy binaries exported by the BlockLab model and exports this data as three .npy binaries, one for the complete elevation history of each of three chosen channel nodes. The second script, "make_fig4.py", creates Figure 4 from the paper's main text, which consists of 10-year and 1000-year averaged erosion rates at three points on the channel and hillslope. The third script, "make_figS2.py", creates Supplemental Figure 2 from the paper supplementary information, which consists of 10-year and 1000-year averaged erosion rates at three points along the channel and hillslope in the model control case.
DOI: 10.6084/m9.figshare.7175267.v2
title: Model output and plotting scripts to accompany "Canyon shape and erosion dynamics governed by channel-hillslope feedbacks"

description: This fileset contains all of the model output used to generate Figure 4, and its companions in the supporting information, from Glade, Shobe, Anderson, and Tucker (submitted).<br>These figures use output from the BlockLab landscape evolution model (https://doi.org/10.5281/zenodo.2584363). All model output required to generate Figure 4 from the manuscript, and the accompanying plots from the supporting information, is included here.<br><br>The model output consists of time series of topographic elevation for the channel (the entire channel profile) and three points along the hillslope, which are user-determined in the driver script when running the BlockLab model.<br>Three types of Python 2.7 scripts are presented here. The first, "reorganize_channel_elevation_timeseries.py", only needed if dealing with raw model output, aggregates channel elevation data from the many .npy binaries exported by the BlockLab model and exports this data as three .npy binaries, one for the complete elevation history of each of three chosen channel nodes. The same goes for "reorganize_channel_cover_timeseries.py", which serves the same function for extracting information about channel bed cover over time.<br><br>The third type of script, called for example "erosion_blocky_1_meter.py" (the file name changes for each model realization), plots the model output. "Erosion" figures consist of 10-year and 1000-year averaged erosion rates at three points on the channel and hillslope. "Cover" figures show channel erosion rates and channel cover fractions averaged over the same 10- and 1000-year moving windows.<br><br>Each .zip file contains a folder with the data and plotting scrips for a single model realization. Eight model realizations were presented in the paper: Four "blocky" simulations in which blocks of rock were delivered from a resistant caprock to the landscape, and four "control" simulations in which blocks of caprock immediately turned to soil upon their release. For each of these two scenarios, we tested four different values for the caprock thickness (and therefore block size): 0.1 m, 0.5 m, 0.8 m, and 1.0 m.<br>Please see the associated paper for more information about the model and parameter values.<br>
DOI: 10.7284/103381
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise W1010C using a Hawaii UHDAS instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103382
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise W1010C using a Sea-Bird SBE-911+ instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7175183
title: Table.docx

description: In this table we present data obtained in the lab to study how electrical isolation of metallic particle surface influences Induced Polarizatin effect.<br>
DOI: 10.7284/103380
title: Singlebeam Echosounder data collected during research cruise W1010C using a Knudsen 3260 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7175183.v1
title: Table.docx

description: In this table we present data obtained in the lab to study how electrical isolation of metallic particle surface influences Induced Polarizatin effect.<br>
DOI: 10.6084/m9.figshare.7175072
title: Effective charge dataset of electromigration for machine learning

description: 1. Data. Fig X.csv and Fig SX.csv: Contains all the data used to make Figure X and Figure SX in the manuscript and the SI, respectively.<br>2. Original data set: The complete database used in the study, including all effective charges and all descriptors for all the alloy and pure metal systems is entitled “Dataset(used)”. The complete initially developed database is entitled “Dataset(whole)”.
DOI: 10.7284/106768
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise W1102A using a Hawaii UHDAS instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7174973
title: Fatty acids table.xlsx

description: Attached is the main data about Statistic of Fatty Acid
DOI: 10.6084/m9.figshare.7174937
title: Public ST258 data

description: Metadata for ST258 global pylogenetic tree.
DOI: 10.6084/m9.figshare.7174937.v1
title: Public ST258 data

description: Metadata for ST258 global pylogenetic tree.
DOI: 10.7284/111348
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise W1102A using a Sea-Bird SBE-911+ instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7174931
title: Matlab code from Nonlinear flexure coupling elements for precision control of multibody systems

description: Code for flexure coupling
DOI: 10.7284/106767
title: Singlebeam Echosounder data collected during research cruise W1102A using a Knudsen 3260 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106924
title: Winch data collected during research cruise W1102A using a Markey DUSH-5 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7174922
title: scRNA-seq Datasets

description: "*.csv" files contain the single cell gene expression values (log2(tpm+1)) for all genes in each cell from melanoma and squamous cell carcinoma of head and neck (HNSCC) tumors. The cell type and origin of tumor for each cell is also included in "*.csv" files.The "MalignantCellSubtypes.xlsx" defines the tumor subtype."CCLE_RNAseq_rsem_genes_tpm_20180929.zip" is downloaded from CCLE database.<br>
DOI: 10.7284/106737
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise W1103A using a Hawaii UHDAS instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7174922.v1
title: scRNA-seq Datasets

description: "*.csv" files contain the single cell gene expression values (log2(tpm+1)) for all genes in each cell from melanoma and squamous cell carcinoma of head and neck (HNSCC) tumors. The cell type and origin of tumor for each cell is also included in "*.csv" files.The "MalignantCellSubtypes.xlsx" defines the tumor subtype.
DOI: 10.7284/106918
title: Anemometer data collected during research cruise W1103A using a RM Young 05103 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7173179
title: Masterlist KPC UHL

description: Masterlist KPC UHL
DOI: 10.6084/m9.figshare.7173179.v1
title: Masterlist KPC UHL

description: Masterlist KPC UHL
DOI: 10.7284/106919
title: Anemometer data collected during research cruise W1103A using a RM Young 05103 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111346
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise W1103A using a Sea-Bird SBE-911+ instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7173125
title: Network Modularity Middle Ear Evolution

description: We have studied the anatomical transformations in the mammalian middle ear evolution using Anatomical Network Analysis (AnNA). With our network models, we have tested the role of the bone disconnection trend as the most plausible Evo-Devo mechanism underlying this evolutionary transition. We have identified three types of network modules relating to the jaw-otic complex of synapsids, and five evolutionary stages throughout the mammalian middle ear evolution. We identify two modularity changes, pointing out two developmental events as the key factors in the middle ear evolution: the ossification and posterior degradation of the Meckel's cartilage, and the full disconnection of middle ear bones from their mandibular origin.
DOI: 10.6084/m9.figshare.7173125.v1
title: Network Modularity Middle Ear Evolution

description: We have studied the anatomical transformations in the mammalian middle ear evolution using Anatomical Network Analysis (AnNA). With our network models, we have tested the role of the bone disconnection trend as the most plausible Evo-Devo mechanism underlying this evolutionary transition. We have identified three types of network modules relating to the jaw-otic complex of synapsids, and five evolutionary stages throughout the mammalian middle ear evolution. We identify two modularity changes, pointing out two developmental events as the key factors in the middle ear evolution: the ossification and posterior degradation of the Meckel's cartilage, and the full disconnection of middle ear bones from their mandibular origin.
DOI: 10.7284/106920
title: Fluorometer data collected during research cruise W1103A using a Turner 10-AU instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7173122
title: <i>Rivularia halophila</i> sp. nov. (Nostocales, Cyanobacteria): the first species of <i>Rivularia</i> described with the modern polyphasic approach

description: Natural populations of a <i>Rivularia</i>-like cyanobacterium were collected from the carbonate deposits of the temporarily flooded littoral zone of a hypersaline, high elevation lake, The Laguna Negra, Andes, Argentina. Subsequently, the cyanobacterial strain PUNA-NP3, named after its origin (Puna Volcanic Plateau) was isolated from these <i>Rivularia</i>-like rounded, pillow-like, black microbial mats. None of the previously described species of the genus <i>Rivularia</i> occupy inland, hypersaline aquatic environments. After morphological examination of this strain, we found clear morphological autapomorphies, such as mucilaginous pads at the bases of the young trichomes, wide trichomes and filaments, and uniquely branched trichomes. Furthermore, based on results from 16S rRNA phylogeny and analysis of the 16S-23S ITS region, PUNA-NP3 was found to be an independent lineage of the evolutionary tree. Based on the combination of ecological, morphological and molecular evidence, we name strain PUNA-NP3 <i>Rivularia halophila</i> sp. nov. a new species under requirements of the International Code of Nomenclature for Algae, Fungi and Plants.
DOI: 10.7284/105064
title: GNSS (Global Navigation Satellite System) data collected during research cruise W1103A using a Ashtech ADU5 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7173122.v1
title: <i>Rivularia halophila</i> sp. nov. (Nostocales, Cyanobacteria): the first species of <i>Rivularia</i> described with the modern polyphasic approach

description: Natural populations of a <i>Rivularia</i>-like cyanobacterium were collected from the carbonate deposits of the temporarily flooded littoral zone of a hypersaline, high elevation lake, The Laguna Negra, Andes, Argentina. Subsequently, the cyanobacterial strain PUNA-NP3, named after its origin (Puna Volcanic Plateau) was isolated from these <i>Rivularia</i>-like rounded, pillow-like, black microbial mats. None of the previously described species of the genus <i>Rivularia</i> occupy inland, hypersaline aquatic environments. After morphological examination of this strain, we found clear morphological autapomorphies, such as mucilaginous pads at the bases of the young trichomes, wide trichomes and filaments, and uniquely branched trichomes. Furthermore, based on results from 16S rRNA phylogeny and analysis of the 16S-23S ITS region, PUNA-NP3 was found to be an independent lineage of the evolutionary tree. Based on the combination of ecological, morphological and molecular evidence, we name strain PUNA-NP3 <i>Rivularia halophila</i> sp. nov. a new species under requirements of the International Code of Nomenclature for Algae, Fungi and Plants.
DOI: 10.6084/m9.figshare.7173113
title: Network Modularity Middle Ear Evolution

description: We have studied the anatomical transformations in the mammalian middle ear evolution using Anatomical Network Analysis (AnNA). With our network models, we have tested the role of the bone disconnection trend as the most plausible Evo-Devo mechanism underlying this evolutionary transition. We have identified three types of network modules relating to the jaw-otic complex of synapsids, and five evolutionary stages throughout the mammalian middle ear evolution. We identify two modularity changes, pointing out two developmental events as the key factors in the middle ear evolution: the ossification and posterior degradation of the Meckel's cartilage, and the full disconnection of middle ear bones from their mandibular origin.
DOI: 10.7284/107046
title: GNSS (Global Navigation Satellite System) data collected during research cruise W1103A using a Garmin GPS-17HVS instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7173113.v2
title: Network Modularity Middle Ear Evolution

description: We have studied the anatomical transformations in the mammalian middle ear evolution using Anatomical Network Analysis (AnNA). With our network models, we have tested the role of the bone disconnection trend as the most plausible Evo-Devo mechanism underlying this evolutionary transition. We have identified three types of network modules relating to the jaw-otic complex of synapsids, and five evolutionary stages throughout the mammalian middle ear evolution. We identify two modularity changes, pointing out two developmental events as the key factors in the middle ear evolution: the ossification and posterior degradation of the Meckel's cartilage, and the full disconnection of middle ear bones from their mandibular origin.
DOI: 10.7284/106922
title: Gyrocompass data collected during research cruise W1103A using a Sperry MK-37 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7173113.v1
title: Network Modularity Middle Ear Evolution

description: We have studied the anatomical transformations in the mammalian middle ear evolution using Anatomical Network Analysis (AnNA). With our network models, we have tested the role of the bone disconnection trend as the most plausible Evo-Devo mechanism underlying this evolutionary transition. We have identified three types of network modules relating to the jaw-otic complex of synapsids, and five evolutionary stages throughout the mammalian middle ear evolution. We identify two modularity changes, pointing out two developmental events as the key factors in the middle ear evolution: the ossification and posterior degradation of the Meckel's cartilage, and the full disconnection of middle ear bones from their mandibular origin.
DOI: 10.7284/106923
title: Meteorological Station data collected during research cruise W1103A using a Vaisala PTU301 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106736
title: Singlebeam Echosounder data collected during research cruise W1103A using a Knudsen 3260 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107045
title: Singlebeam Echosounder data collected during research cruise W1103A using a Knudsen 3260 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7172885.v1
title: suppData1-OGs.txt

description: Lateral Gene Transfer candidate set: Hydrogenosomal protein prediction. Set of predicted hydrogenosomal proteins that are candidates to have been horizontally transferred from Bacteria to the eukaryote Piromyces sp. <br>
DOI: 10.7284/107044
title: Water Temperature data collected during research cruise W1103A using a Sea-Bird SBE-38 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106921
title: Winch data collected during research cruise W1103A using a Markey DUSH-5 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106770
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise W1104A using a Hawaii UHDAS instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106928
title: Anemometer data collected during research cruise W1104A using a RM Young 05103 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7172822
title: Killifish thermal preferences

description: Primary data (and readme file) for Zak et al. Limited differentiation of fundamental thermal niches within the killifish assemblage from shallow temporary waters
DOI: 10.6084/m9.figshare.7172822.v1
title: Killifish thermal preferences

description: Primary data (and readme file) for Zak et al. Limited differentiation of fundamental thermal niches within the killifish assemblage from shallow temporary waters
DOI: 10.7284/106929
title: Anemometer data collected during research cruise W1104A using a RM Young 05103 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111344
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise W1104A using a Sea-Bird SBE-911+ instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106926
title: Fluorometer data collected during research cruise W1104A using a Turner 10-AU instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105065
title: GNSS (Global Navigation Satellite System) data collected during research cruise W1104A using a Ashtech ADU5 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107050
title: GNSS (Global Navigation Satellite System) data collected during research cruise W1104A using a Garmin GPS-17HVS instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106927
title: Gyrocompass data collected during research cruise W1104A using a Sperry MK-37 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7172600
title: combined_fastq.zip

description: Data associated with the evaluation of the Oxford Nanopore MinIOn sequencer on samples including upper respiratory viruses.
DOI: 10.7284/106925
title: Meteorological Station data collected during research cruise W1104A using a Vaisala PTU301 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7172600.v1
title: combined_fastq.zip

description: Data associated with the evaluation of the Oxford Nanopore MinIOn sequencer on samples including upper respiratory viruses.
DOI: 10.7284/107047
title: Radiometer data collected during research cruise W1104A using a Eppley RAD instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107048
title: Rain Gauge data collected during research cruise W1104A using a RM Young 50202 instrument system onboard the platform RV Wecoma

description: Original (unprocessed) data collected during a Field_expedition