cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23623614.v1
title: Systems pharmacology approach to explore the mechanisms of shufeng Jiedu Capsule on treating H1N1 infection

description: Influenza caused by the H1N1 virus still affects human health. There is currently no effective strategy against H1N1 virus infection. The present study is to evaluate the mechanism of Shufeng Jiedu Capsule (SFJDC) in the treatment of H1N1 infection using an integrated systems pharmacology approach and experimental validation. SFJDC is recommended for the treatment of H1N1 infection in traditional Chinese medicine (TCM), whose mechanism of action is not precise. We systematically analyzed SFJDC using a systematic pharmacology and ADME screening model, and predicted effective targets using systematic drug targeting (SysDT) algorithm. Subsequently, the network of interactions between compounds and targets was built to help in the discovery of new drugs. In addition, the pathway of molecular action was determined by using enrichment analysis from the predicted targets. what is more, molecular docking also applied to predict the specific binding sites and binding capacity of active compounds and related targets, which validated the results of the compounds-targets network (C-T network). Finally, the mechanism of SFJDC effect on autophagy and virus replication in H1N1 virus-infected RAW264.7 mouse macrophage cells was experimentally verified. The systematic pharmacology results suggested that 68 candidate compounds were obtained from SFJDC, which interacted with 74 different targets related to inflammation and the immune system. The CCK-8 results showed that different concentrations of SFJDC serum had no significant inhibitory effect on the viability of RAW264.7 cells. LC3-II was significantly increased after virus infection compared to the control group, while it was inhibited by different concentrations of SFJDC serum. H1N1 virus nucleocapsid protein (NP protein) was significantly reduced in the high concentration group, Interleukin-1β (IL-1β), Interleukin-6 (IL-6), Tumor Necrosis Factor-α (TNF-α), and viral M1 gene were significantly reduced compared to the H1N1 group. The integrated systemic pharmacological approach and experimental validation not only provide a precise explanation of the molecular mechanism of SFJDC in the treatment of H1N1 infection but also provide valuable clues for the development of novel drug strategies to control the H1N1 infection.
DOI: 10.24403/jp.1342856
title: Wagenitz, Gerhard: Wörterbuch der Botanik. Die Termini in ihrem historischen Zusammenhang. Zweite, erweiterte Auflage. Mit 10 Abbildungen, einem englisch-deutschen und einem französisch-deutschen Register. - Heidelberg ; Berlin : Spektrum Akademischer Verlag GmbH, 2003 / [rezensiert von] S. Jost Casper
DOI: 10.6084/m9.figshare.11565057
title: MOESM1 of Bayesian differential analysis of gene regulatory networks exploiting genetic perturbations

description: Additional file 1 Software. Software package that implements the BFDSEM algorithm.
DOI: 10.6084/m9.figshare.11565057.v1
title: MOESM1 of Bayesian differential analysis of gene regulatory networks exploiting genetic perturbations

description: Additional file 1 Software. Software package that implements the BFDSEM algorithm.
DOI: 10.25381/cput.21582885
title: Altmetric analysis of research outputs in the faculty of business and management sciences at the Cape Peninsula University of Technology

description: <b>Ethical Clearance reference number: </b>2018FBREC548My data is mostly quantitative representation of Altmetric indicators of the researchers of the department under investigation, viz. Department of Tourism and Events Management; as well as the Research output visibility of the same department on Academic Social Media platforms.
DOI: 10.25381/cput.21582885.v2
title: Altmetric analysis of research outputs in the faculty of business and management sciences at the Cape Peninsula University of Technology

description: <b>Ethical Clearance reference number: </b>2018FBREC548My data is mostly quantitative representation of Altmetric indicators of the researchers of the department under investigation, viz. Department of Tourism and Events Management; as well as the Research output visibility of the same department on Academic Social Media platforms.
DOI: 10.25381/cput.21582885.v1
title: ALTMETRIC ANALYSIS OF RESEARCH OUTPUTS IN THE FACULTY OF BUSINESS AND MANAGEMENT SCIENCES AT THE CAPE PENINSULA UNIVERSITY OF TECHNOLOGY

description: <b>Ethical Clearance reference number: </b>2018FBREC548My data is mostly quantitative representation of Altmetric indicators of the researchers of the department under investigation, viz. Department of Tourism and Events Management; as well as the Research output visibility of the same department on Academic Social Media platforms.
DOI: 10.6084/m9.figshare.11565114
title: MOESM6 of Bayesian differential analysis of gene regulatory networks exploiting genetic perturbations

description: Additional file 6 Table A1. A table including the Entrez ID, gene names, corresponding eQTL ID, aliases and brief description of the 15 filtered lung genes.
DOI: 10.6084/m9.figshare.11565114.v1
title: MOESM6 of Bayesian differential analysis of gene regulatory networks exploiting genetic perturbations

description: Additional file 6 Table A1. A table including the Entrez ID, gene names, corresponding eQTL ID, aliases and brief description of the 15 filtered lung genes.
DOI: 10.6084/m9.figshare.5797977
title: Clustering Scientific Document Based on an Extended Citation Model

description: This is the raw data of the manuscript "clustering scientific document based on an extended citation model." The data contain two parts. One is the files in xml format, which are download from PMC database. The other is the file in txt format that contains a list of pmid of documents used in the manuscript. People could also downloade these data according to the method introduced in the manuscript.
DOI: 10.6084/m9.figshare.14710545.v2
title: AST-120 Treatment Alters the Gut Microbiota Composition and Suppresses Hepatic Triglyceride Levels in Obese Mice

description: <b>Background:</b> The prevalence of nonalcoholic fatty liver disease (NAFLD) has been increasing worldwide. The existence of a relationship between the microbiota and the pathology of hepatic steatosis is also becoming increasingly clear. AST-120, an oral spherical carbon adsorbent, has been shown to be useful for delaying dialysis initiation and improving uremic symptoms in patients with chronic kidney disease. However, little is known about the effect of AST-120 on fatty liver. <b>Methods:</b> AST-120 (5% w/w) was administrated to 6-week-old male <i>db/db</i> mice for 8 weeks. The body weight, blood glucose and food consumption were examined. Hepatic triglyceride (TG) levels, lipid droplets and epididymal fat cell size were measured. The gut microbiota compositions were investigated in feces and cecum. <b>Results:</b> Significant decreases of the hepatic weight and hepatic TG levels were observed in the AST-120-treated <i>db/db</i> mice. Furthermore, AST-120 treatment was also associated with a decrease of Bacteroidetes, increase of Firmicutes, and a reduced ratio of Bacteroidetes to Firmicutes (B/F ratio) in the feces in the <i>db/db</i> mice. The B/F ratio in the feces was correlated with the liver weight and area of the liver occupied by lipid droplets in the <i>db/db</i> mice. <b>Conclusions:</b> These data suggest that AST-120 treatment alters the composition of the fecal microbiota and suppresses hepatic TG levels in the <i>db/db</i> mice.
DOI: 10.6084/m9.figshare.11565222
title: MOESM1 of Association analysis between constructed SNPLDBs and GCA effects of 9 quality-related traits in parents of hybrid rice (Oryza sativa L.)

description: Additional file 1: Table S1. Means of 9 quality traits in 48 Indica crosses (F2 bulks).
DOI: 10.6084/m9.figshare.11565222.v1
title: MOESM1 of Association analysis between constructed SNPLDBs and GCA effects of 9 quality-related traits in parents of hybrid rice (Oryza sativa L.)

description: Additional file 1: Table S1. Means of 9 quality traits in 48 Indica crosses (F2 bulks).
DOI: 10.6084/m9.figshare.11565231
title: MOESM2 of Association analysis between constructed SNPLDBs and GCA effects of 9 quality-related traits in parents of hybrid rice (Oryza sativa L.)

description: Additional file 2: Table S2. Means of 9 quality traits in 78 Japonica crosses (F2 bulks).
DOI: 10.6084/m9.figshare.11565231.v1
title: MOESM2 of Association analysis between constructed SNPLDBs and GCA effects of 9 quality-related traits in parents of hybrid rice (Oryza sativa L.)

description: Additional file 2: Table S2. Means of 9 quality traits in 78 Japonica crosses (F2 bulks).
DOI: 10.6084/m9.figshare.11565240
title: MOESM3 of Association analysis between constructed SNPLDBs and GCA effects of 9 quality-related traits in parents of hybrid rice (Oryza sativa L.)

description: Additional file 3: Table S3. The values and scores of five levels of nine grain quality traits in Indica rice.
DOI: 10.6084/m9.figshare.11565240.v1
title: MOESM3 of Association analysis between constructed SNPLDBs and GCA effects of 9 quality-related traits in parents of hybrid rice (Oryza sativa L.)

description: Additional file 3: Table S3. The values and scores of five levels of nine grain quality traits in Indica rice.
DOI: 10.6084/m9.figshare.11565246
title: MOESM4 of Association analysis between constructed SNPLDBs and GCA effects of 9 quality-related traits in parents of hybrid rice (Oryza sativa L.)

description: Additional file 4: Table S4. The values and scores of five levels of nine grain quality traits in Japonica rice.
DOI: 10.6084/m9.figshare.11565246.v1
title: MOESM4 of Association analysis between constructed SNPLDBs and GCA effects of 9 quality-related traits in parents of hybrid rice (Oryza sativa L.)

description: Additional file 4: Table S4. The values and scores of five levels of nine grain quality traits in Japonica rice.
DOI: 10.6084/m9.figshare.11565276
title: MOESM1 of Bionomics and insecticide resistance of Aedes albopictus in Shandong, a high latitude and high-risk dengue transmission area in China

description: Additional file 1: Table S1. Mosquito sampling sites.
DOI: 10.6084/m9.figshare.11565276.v1
title: MOESM1 of Bionomics and insecticide resistance of Aedes albopictus in Shandong, a high latitude and high-risk dengue transmission area in China

description: Additional file 1: Table S1. Mosquito sampling sites.
DOI: 10.6084/m9.figshare.11565279
title: MOESM2 of Bionomics and insecticide resistance of Aedes albopictus in Shandong, a high latitude and high-risk dengue transmission area in China

description: Additional file 2: Table S2. The BI value between 2017 and 2018.
DOI: 10.6084/m9.figshare.11565279.v1
title: MOESM2 of Bionomics and insecticide resistance of Aedes albopictus in Shandong, a high latitude and high-risk dengue transmission area in China

description: Additional file 2: Table S2. The BI value between 2017 and 2018.
DOI: 10.6084/m9.figshare.11565285
title: MOESM3 of Bionomics and insecticide resistance of Aedes albopictus in Shandong, a high latitude and high-risk dengue transmission area in China

description: Additional file 3: Table S3. The CI value between 2017 and 2018.
DOI: 10.6084/m9.figshare.11565285.v1
title: MOESM3 of Bionomics and insecticide resistance of Aedes albopictus in Shandong, a high latitude and high-risk dengue transmission area in China

description: Additional file 3: Table S3. The CI value between 2017 and 2018.
DOI: 10.6084/m9.figshare.11565294
title: MOESM4 of Bionomics and insecticide resistance of Aedes albopictus in Shandong, a high latitude and high-risk dengue transmission area in China

description: Additional file 4: Table S4. Biting rate of Ae. albopictus females collected per person per hour using the HDN method.
DOI: 10.6084/m9.figshare.11565294.v1
title: MOESM4 of Bionomics and insecticide resistance of Aedes albopictus in Shandong, a high latitude and high-risk dengue transmission area in China

description: Additional file 4: Table S4. Biting rate of Ae. albopictus females collected per person per hour using the HDN method.
DOI: 10.6084/m9.figshare.11565297
title: MOESM5 of Bionomics and insecticide resistance of Aedes albopictus in Shandong, a high latitude and high-risk dengue transmission area in China

description: Additional file 5: Table S5. Genotypes at codons 1532 and 1534 in Ae. albopictus.
DOI: 10.6084/m9.figshare.11565297.v1
title: MOESM5 of Bionomics and insecticide resistance of Aedes albopictus in Shandong, a high latitude and high-risk dengue transmission area in China

description: Additional file 5: Table S5. Genotypes at codons 1532 and 1534 in Ae. albopictus.
DOI: 10.6084/m9.figshare.12089679
title: Complete chloroplast genome sequence of an endangered Ottelia cordata and its phylogenetic analysis

description: complete chloroplast genome of <i>Ottelia cordata</i> was assembled and characterized from high-throughput Illumina sequencing data.Furthermore, its SSR, long repeat sequenced, codon usage and phylogenetic tree were respectively identified and analyzed<b></b><i></i><sub></sub><sup></sup><br>
DOI: 10.6084/m9.figshare.14710545.v1
title: AST-120 Treatment Alters the Gut Microbiota Composition and Suppresses Hepatic Triglyceride Levels in Obese Mice

description: <b>Background:</b> The prevalence of nonalcoholic fatty liver disease (NAFLD) has been increasing worldwide. The existence of a relationship between the microbiota and the pathology of hepatic steatosis is also becoming increasingly clear. AST-120, an oral spherical carbon adsorbent, has been shown to be useful for delaying dialysis initiation and improving uremic symptoms in patients with chronic kidney disease. However, little is known about the effect of AST-120 on fatty liver. <b>Methods:</b> AST-120 (5% w/w) was administrated to 6-week-old male <i>db/db</i> mice for 8 weeks. The body weight, blood glucose and food consumption were examined. Hepatic triglyceride (TG) levels, lipid droplets and epididymal fat cell size were measured. The gut microbiota compositions were investigated in feces and cecum. <b>Results:</b> Significant decreases of the hepatic weight and hepatic TG levels were observed in the AST-120-treated <i>db/db</i> mice. Furthermore, AST-120 treatment was also associated with a decrease of Bacteroidetes, increase of Firmicutes, and a reduced ratio of Bacteroidetes to Firmicutes (B/F ratio) in the feces in the <i>db/db</i> mice. The B/F ratio in the feces was correlated with the liver weight and area of the liver occupied by lipid droplets in the <i>db/db</i> mice. <b>Conclusions:</b> These data suggest that AST-120 treatment alters the composition of the fecal microbiota and suppresses hepatic TG levels in the <i>db/db</i> mice.
DOI: 10.6084/m9.figshare.16807534
title: Additional file 1 of SWATH-MS based quantitive proteomics reveal regulatory metabolism and networks of androdioecy breeding system in Osmanthus fragrans

description: Additional file 1: Table S1. Proteins identified by SWATH-MS in this study.
DOI: 10.6084/m9.figshare.16807537
title: Additional file 2 of SWATH-MS based quantitive proteomics reveal regulatory metabolism and networks of androdioecy breeding system in Osmanthus fragrans

description: Additional file 2: Table S2. Functional classification of DEPs with the MapMAN BIN system.
DOI: 10.15156/bio/th082020
title: TH082020
title: Peribolospora

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th082021
title: TH082021
title: Prionitis

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.5281/zenodo.8304983
title: Research Data for Research Activity "Virtual Climatization"

description: Machining workpieces on machine tools is an inherently energy intensive process. To achieve ever increasing tolerance requirements, thermal disturbances on machine tool and workpiece and resulting thermo-elastic deformations need to be addressed. Instead of cooling whole shopfloor environments and machines, desensitizing the process against temperature changes has the potential to reduce the carbon footprint of machining processes. To develop models for machine tool error prediction due to temperature, a comprehensive and diverse data set is essential. It includes data sources that capture relevant information about the machine tool's thermal behavior and its corresponding error. Hence, an experiment moving a machine tool with a fixed path is run for several hundred times with the same path for each run. Simultaneously, the actual machine position is measured using a laser tracker and component temperature is tracked. https://git-ce.rwth-aachen.de/mark.sanders/bzt-data
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy -- EXC-2023 Internet of Production -- 390621612. Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Project-ID 298597595 -- AutoKompII.
DOI: 10.5281/zenodo.8304984
title: Research Data for Research Activity "Virtual Climatization"

description: Machining workpieces on machine tools is an inherently energy intensive process. To achieve ever increasing tolerance requirements, thermal disturbances on machine tool and workpiece and resulting thermo-elastic deformations need to be addressed. Instead of cooling whole shopfloor environments and machines, desensitizing the process against temperature changes has the potential to reduce the carbon footprint of machining processes. To develop models for machine tool error prediction due to temperature, a comprehensive and diverse data set is essential. It includes data sources that capture relevant information about the machine tool's thermal behavior and its corresponding error. Hence, an experiment moving a machine tool with a fixed path is run for several hundred times with the same path for each run. Simultaneously, the actual machine position is measured using a laser tracker and component temperature is tracked.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy -- EXC-2023 Internet of Production -- 390621612. Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Project-ID 298597595 -- AutoKompII.
DOI: 10.5281/zenodo.8315031
title: Research Data for Research Activity "Virtual Climatization"

description: Machining workpieces on machine tools is an inherently energy intensive process. To achieve ever increasing tolerance requirements, thermal disturbances on machine tool and workpiece and resulting thermo-elastic deformations need to be addressed. Instead of cooling whole shopfloor environments and machines, desensitizing the process against temperature changes has the potential to reduce the carbon footprint of machining processes. To develop models for machine tool error prediction due to temperature, a comprehensive and diverse data set is essential. It includes data sources that capture relevant information about the machine tool's thermal behavior and its corresponding error. Hence, an experiment moving a machine tool with a fixed path is run for several hundred times with the same path for each run. Simultaneously, the actual machine position is measured using a laser tracker and component temperature is tracked. https://git-ce.rwth-aachen.de/mark.sanders/bzt-data
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy -- EXC-2023 Internet of Production -- 390621612. Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Project-ID 298597595 -- AutoKompII.
DOI: 10.15156/bio/th082022
title: TH082022
title: Brunneosphaerella

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th082023
title: TH082023
title: Oocephalus

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th082024
title: TH082024
title: Anogeissus

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th082025
title: TH082025
title: Lychnocephalus

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th082026
title: TH082026
title: Pulchromyces

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.