cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bcmn9cxyzs
title: Single molecule mRNA Fluorescent In Situ Hybridization combined to Immunofluorescence in S. cerevisiae: Dataset and quantification

description: Single molecule fluorescent in situ hybridization (smFISH) has emerged as a powerful technique that allows one to localize and quantify the absolute number of mRNAs in single cells. This approach has the potential to reveal the subcellular localization of mRNAs in individual cells, the cell-to-cell variability in gene expression and to precisely quantify the number of mRNAs in the cytoplasm and at the transcription site. In combination with immunofluorescence now smFISH can be used to correlate the expression on an mRNA of interest to the expression of a protein in single cells. The dataset provided here is described in the recently published smFISH-IF protocol “Simultaneous detection of mRNA and protein in S. cerevisiae by single molecule FISH and Immunofluorescence” [1]. We provide and quantify the smFISH-IF dataset detecting the cell cycle-controlled mRNA CLN2 and the cell cycle marker alpha-tubulin. In this article we analyse the smFISH data using the freely available Matlab-written software FISH-quant [2]. The provided datasets are meant to assist scientists interested in setting up smFISH-IF in their laboratory. Furthermore, software developers interested in creating imaging analysis tools for gene expression analysis in single cells, may find useful the provided the data.
DOI: 10.17632/cyz5k2jnzc
title: The Impact of Lifestyle Factors on Cardiometabolic Comorbidities and Mortality of Psoriatic Diseases: A Multi-State Model Analysis

description: Supplementary Fig 1. Study design
Supplementary Table I. The standard UKB endpoints used in the present study
Supplementary Table II. Effects of genetic and lifestyle factors for the trajectory of psoriatic and cardiometabolic multimorbidity
Supplementary Table III. Effects of genetic and lifestyle factors for the trajectory of cutaneous-only psoriasis (PsO) and cardiometabolic multimorbidity
Supplementary Table IV. Subgroup analyses by gender
Supplementary Table V. The lifestyle score and the trajectory of cardiometabolic diseases
Supplementary Table VI. Life expectancy in different lifestyle groups in participants with psoriatic diseases
DOI: 10.17632/nsm6bk34vt
title: On Regional Borrowing, Default, and Migration Reproduction

description: Reproduction code for 
On Regional Borrowing, Default, and Migration
Journal of International Economics
Grey Gordon and Pablo Guerron
DOI: 10.6084/m9.figshare.12736604.v1
title: Supplemental Data_L-00522-2019R1.pdf

description: <b>This is the ONLINE DATA SUPPLEMENT for the communicated paper titled </b> <b> "</b>Non-canonical role for Ku70/80 in the prevention of allergic airway inflammation via maintenance of airway epithelial cell organelle homeostasis:. This has been communicated to AJP-Lung Cellular and Molecular Physiology.
DOI: 10.6084/m9.figshare.16802869.v1
title: Data associated with the paper 'Changes in the abundance and activity of feral cats following high severity fire on Kangaroo Island, Australia'

description: This data is associated with the paper 'Changes in the abundance and activity of feral cats following high severity fire on Kangaroo Island, Australia' submitted to the journal Wildlife Research. The paper also references previously published data from the paper 'pre eradication estimate of feral cat density on Kangaroo Island, South Australia, also published in Wildlife Research. Data for one array (Forest 3) was not included as it was collected as part of a separate project, and could not be shared as part of this project.<br>The data set is set up with all camera locations from all camera arrays listed on the first sheet, and other sheets set up to provide information on the time and locations that cats and possums were detected at. For further details on the methodology please see the methods section of the paper 'Changes in the abundance and activity of feral cats following high severity fire on Kangaroo Island, Australia'.
DOI: 10.6084/m9.figshare.20055983.v1
title: Local polygon mesh data of Chicago

description: The data is a local polygon mesh model of Chicago, which is located in a local 3D Cartesian coordinate. In this local coordinate system, the X, Y, and Z coordinate ranges of the model are [0.0 km, 1.9992km], [0.0 km, 1.893km], and [0.0 km, 0.443 km], respectively. The format of this data is OBJ.<br>
DOI: 10.6084/m9.figshare.21896400.v1
title: scRNA-seq data of day 12 adult mouse wound healing

description: scRNA-seq data of day 12 adult mouse wound healing used in CellChat paper
DOI: 10.17632/gkxzb5hcmk
title: Stimulus-Response signaling dynamics characterize macrophage polarization states

description: Nuclear NFκB trajectories in csv format for each experimental condition. First three letters of document name code for stimulus (e.g. PIC = Poly(I:C)). Next two letters code for polarization (e.g. ib = IFNβ, no code is M0). Final number (1 or 2) gives replicate number. Zipped folders contain calculated QC metrics and informative feature values using same naming conventions. Time series data and features also provided for DHA pretreated cells stimulated with Pam3CSK (P3K_DHA).

Name Codes:
TNF = TNF
R84 = R848
PIC = Poly(I:C)
P3K = Pam3CSK
FLA = Flagellin
CpG = CpG
FSL = FSL1
LPS = LPS

ib = IFNb
ig = IFNg
i0 = IL10
i3 = IL13
i4 = IL4
DOI: 10.17632/rkrps2sbx6
title: Real-world experience of bimekizumab for plaque psoriasis in adult patients with prior exposure to interleukin-23 inhibitors: A multicenter retrospective review

description: In routine clinical practice, biologic switching is common in adult patients with plaque psoriasis. While our group previously reported overall real-world 16-week and 52-week treatment outcomes of bimekizumab, a novel interleukin (IL)-17A/IL-17F inhibitor, limited information exists on switching class from an IL-23 inhibitor (IL-23i) to bimekizumab. This subset analysis of our retrospective cohort study specifically analyzes bimekizumab use following IL-23i exposure.
DOI: 10.6084/m9.figshare.8009684.v1
title: Supplemental Information Data and Code

description: Code required to generate the figures for the supplemental material for CA Guerra et al. "Human Mobility Patterns and Malaria Importation on Bioko Island."
DOI: 10.17632/rvwy7rmn9p
title: Catholics in Australia 2022-1: Mass Attendance

description: The Catholics in Australia survey of 2022 (n=2305) collected data on a range of variables from Australians who identified as Catholics. The sample was dominated by regular Mass attenders and provides an insight into this population. This data subset only contains variables described in the research paper Catholics in Australia Survey 1 - Mass Attendance.
DOI: 10.17632/yshmvkmsc8
title: Avoiding over-promotion of tonsillectomy for the treatment of psoriasis: A bidirectional two-sample Mendelian randomization study

description: The tonsillectomy and psoriasis data information is in sTable1, with detailed results of MR (sTable2), association effects for each SNP (sTable3), results of heterogeneity test (sTable4), results of horizontal polytropy (sTable5), and results of MR-PRESSO (sTable6);
DOI: 10.6084/m9.figshare.21931089.v2
title: Landsat 8 scene of the Momotombo volcano eruption of December 2015

description: Selected Landsat 8 scenes (only bands 2-7 and 10) of the December 2015 eruption of the Momotombo volcano, Nicaragua. The scene was downloaded from USGS Earth Explorer. Original data are in the public domain and are redistributed here in accordance with the Landsat Data Distribution Policy.
DOI: 10.6084/m9.figshare.21959930.v2
title: Candidate 3

description: A data for MDPI (2023).
DOI: 10.6084/m9.figshare.5123029.v1
title: Supplementary Material for: Characterizing Small Supernumerary Marker Chromosomes with Combination of Multiple Techniques

description: Fourteen cases with constitutional small supernumerary marker chromosomes (sSMCs) were assessed by combination of diverse techniques including genome-wide high-resolution chromosomal microarray (CMA), chromosome banding analysis (G banding), fluorescence in situ hybridization (FISH), and quantitative real-time PCR (qPCR). Of the 14 sSMCs, 4 were complex sSMCs composed of genomic materials from more than one chromosome, 7 were simple sSMCs which contain only centromeric and/or pericentromeric regions from individual chromosomes, and the remaining 3 sSMCs contained inverted duplications. CMA precisely defined the breakpoints and genetic contents in 12 of the 14 sSMCs but failed to identify 2 of the 14 sSMCs due to lack of detectable euchromatin. In addition, CMA revealed unexpected genomic abnormalities in 2 cases. FISH techniques were necessary for the determination of the physical location, structure, formation mechanism, mosaic level, and origin of all these sSMCs. Our data emphasize the necessity to combine these methods for comprehensive characterization of sSMCs
DOI: 10.17632/23wxhgd55p
title: Crystallographic orientation data from chloride-induced stress corrosion crack (CISCC) paths in gas tungsten arc welded (GTAW) austenitic stainless steel 304L 

description: This dataset presents crystallographic data collected along chloride-induced stress corrosion cracks (CISCC) in a gas tungsten arc welded (GTAW) austenitic stainless steel (AuSS) 304L.  The experimental setup involved a welded stainless steel 304L coupon of dimensions 105 mm × 18.5 mm × 3 mm, loaded in a 4-point bending fixture with a maximum tensile stress of 380 MPa. The fixtured specimen was immersed in boiling magnesium chloride (MgCl2) solution until a through-crack was observed on the specimen surface after 17 hours of boiling. The cross-section was subsequently polished, and 37 cracks of interest in the heat affected zone (HAZ) and weld zone (WZ) were selected for crystallographic characterization. Scanning electron microscopy (SEM) based electron backscatter diffraction (EBSD) was used to map the grain orientations along and surrounding each crack path. The obtained orientation imaging microscopy (OIM) datasets were post-processed using EDAX OIM V8 proprietary software to generate inverse pole figures (IPF), image quality (IQ) figures, detector signal (SEM) images, and to determine the Taylor factor and Schmid factor of mapped grains. This dataset can be used to understand CISCC crack initiation, propagation, and termination behaviors, as has been reported in the accompanying original research article. This data article providing the raw EBSD OIM datasets and processed images formatted for accessibility in future studies. This comprehensive EBSD dataset can further be used to extract grain boundary misorientation information; benchmark comparative studies of SCC/CISCC in AuSS and other Fe or Ni alloys; and provide critical validation data on grain morphology, misorientation, and crystallography for GTAW and CISCC models.

The data repository contains raw SEM EBSD files and associated image files for 37 CISCC cracks observed in GTAW 304L AuSS. All files for a given crack are organized into a dedicated folder with naming convention “zone #” – where “zone” indicates whether the crack was located in the heat-affected zone (HAZ) or the weld zone (WZ), and “#” is the identification number of the crack. The files in each of these folders are:
•	zone #.oim – Raw EBSD OIM file
•	zone IPF #.tif – inverse pole figure (IPF) image
•	zone IQ #.tif – image quality (IQ) figure
•	zone EBSD-SEM #.tif – SEM EBSD detector signal image of the crack(s)
•	zone HR-SEM #.tif – High resolution SEM image of the crack(s)
In addition, a table DATA IN BRIEF crack behavior summary table. xlsx is also included in the repository to link the raw data and image files to key metadata including crack initiation mode, propagation mode, crack length, and other notable behaviors.
DOI: 10.17632/fhf2n75spb
title: Data for: Performance of data-based models for early detection of damage in concrete dams

description: Version 2: Correction to duplicate columns of temperature data.

Crest displacement [mm] data from simulations of the seasonal displacements of a Buttress dam for 18 years. The data is used for evaluation of the accuracy of damage detection. The data consists of one column with crest displacement from the undamaged dam (UD) and nine rows of crest displacement from the dam with various types of damage. 
Three locations of damage in the dam and three scenarios were used. The first two locations were to introduce damage in either the whole front plate (FP) or the whole buttress (Bu). The third location was to introduce damage only in cracks corresponding to the crack pattern (Cr) observed at the dam. The three damage time scenarios were used:
-Continuous decrease (C)
-Instantaneous decrease (I)
-Seasonal decrease (S)
The data also includes the water temperature, the air temperature outside and air temperature in the dam enclosed area between the front plate and the insulating wall.
DOI: 10.17632/rpyrkd98mz
title: Data for: Long-Term Trends Show Improvements in Water Quality in the Chicago Metropolitan Region with Investment in Wastewater Infrastructure, Deep Tunnels, and Reservoirs

description: Compiled water quality data of the Chicago, Calumet, and Des Plaines River Systems from 1975 to 2018. Data were collected as part of the Metropolitan Water Reclamation District's Ambient Water Quality Monitoring program. A study was carried out to evaluate water quality trends from 1975 to 2012 and from 2013 to 2018 in the Chicago, Calumet, and Des Plaines River Systems in Cook County, Illinois, in order to investigate the outcome of practices carried out by the Metropolitan Water Reclamation District of Greater Chicago. Data from 41 monitoring locations were compiled and analyzed for 11 water quality parameters. The seasonal Kendall test was performed on each variable at each location to analyze for long-term monotonic trends. Wilcoxon Rank-Sum test was used to test for significant differences in water quality constituents between time periods to point to practices that changed water quality during the study period. For most sampling locations, long-term trend analyses showed significant downward trends for total organic carbon (TOC), total Kjeldahl nitrogen (TKN), ammonium nitrogen (NH4-N), total suspended solids (TSS), fecal coliform (FC), and sulfate and significant upward trends for dissolved oxygen (DO), chloride, and temperature. Total phosphorus (TP) concentrations increased downstream of the Stickney, Kirie, and Calumet WRPs from 1975 to 2012, but decreased downstream of the Kirie WRP and had no trends downstream of the Stickney and Calumet WRPs from 2013 to 2018. Improvements in TKN, NH4-N, TOC, TSS, FC, TP, and DO concentrations over four decades demonstrated the beneficial outcome from the expansion of secondary treatment systems at water reclamation plants, implementation of the Tunnel and Reservoir Plan System, instream and side-stream elevated pool aeration stations, and effluent disinfection. The study is described in the article entitled "Long-Term Trends Show Improvements in Water Quality in the Chicago Metropolitan Region with Investment in Wastewater Infrastructure, Deep Tunnels, and Reservoirs". Supporting Information for this manuscript is attached.
DOI: 10.17632/wr9yvx8wjf
title: Alternative density maps for Abeta42 fibril polymorphs type A and type B

description: Density maps for Abeta42 polymorphs type A and type B, calculated from cryo-EM data with no symmetry in the repeat unit and with C2 symmetry in the repeat unit. These density maps are alternatives to the maps with pseudo-2(1) symmetry that are presented in an upcoming publication by M. Lee, W.-M. Yau, J. M. Louis, and R. Tycko. The maps are identified in the included README.txt file.
DOI: 10.17632/zzxhyjs7pt
title: CHIGLU: A Modular Hardware for Stepper Motorized Quadruped Robot — Design, Analysis, Fabrication, and Validation

description: This repository contains Design and Manufacturing Data for the research project. In this research, we present a design and analysis of a versatile PCB as the main electrical system that allows for the control of twelve stepper motors of a quadruped robot by stacking TMC2208 drivers and an Arduino Mega Pro. The primary motivation behind the design is to offer a compact and efficient solution for applications such as robotic arms, robotics limbs, or exoskeletons that require precise control of multiple stepper motors. The research focuses on the PCB's architecture, stackable design, and the integration of TMC2208 and Arduino Mega Pro. Additionally, PDN (Power Distribution Network) analysis simulation is done to ensure that the voltage and current density within the PCB are within the expected parameters. The ability to stack the controllers on the development board provides insights into the board's heating dynamics. The findings from this research make a significant contribution to the advancement of stepper motor control systems for multi-axis applications, offering a convenient form factor and reliable performance.
DOI: 10.6084/m9.figshare.13265366.v1
title: 14cases_final.xlsx

description: Proxy data (14 records) in the Holocene across the Afro–Asia region, including cave and marine core oxygen isotopes, which were measured for precipitation and hydroclimate and downloaded from the paleoclimatology data website of the National Oceanic and Atmospheric Administration (NOAA).<br>
DOI: 10.6084/m9.figshare.19229907.v1
title: Correlates of Quality of Life among persons living with tuberculosis

description: This data set is on the Quality of Life of persons living with tuberculosis<br>
DOI: 10.6084/m9.figshare.22231681.v1
title: data of food industrial effluents.docx

description: treatment of waste water
DOI: 10.6084/m9.figshare.23896317.v2
title: Role of pop-up advertisements<b> </b>Data Set.xlsx

description: The primary data that was collected from undergraduates in the age group of 18-25 which comes under generation Z in a leading university and a vast majority of the respondents falls under the age range of 22-25 years old, which is a significant amount related to the study. Out of 420 collected data 386 was used to analyze after cleaning the data
DOI: 10.6084/m9.figshare.28974116.v3
title: <b>Dataset for transcription readthrough events in healthy human tissues</b>

description: Transcription readthrough occurs when RNA polymerase bypasses canonical termination sites, producing elongated RNA molecules called readthrough (RT) transcripts or Downstream-of-Gene (DoG) transcripts. Although RT transcripts have been implicated in stress responses and pathological states, their roles in healthy human tissues are poorly understood. This study collected and analyzed RT events across 43 healthy human tissues, identifying 76,583 RT events from 36,335 transcripts across 11,875 genes. The dataset encompasses the sequences, locations, expression profiles, and comprehensive annotation information of corresponding genes for RT transcripts. It provides a thorough elucidation of RT transcriptomics and its significance in gene regulation, offering a wealth of benchmark data to facilitate further research on RT transcripts.<br>The file contains data on Downstream-of-Gene (DoG) transcripts with the following column headers:<br><b>gene_id</b>: Ensembl Gene ID for the gene associated with the DoG transcript.<b>chromosome</b>: Chromosome location of the gene.<b>start_position</b>: Start position of the gene on the chromosome.<b>end_position</b>: End position of the gene on the chromosome.<b>strand</b>: Strand orientation of the gene (e.g., + or -).<b>chromosome (DoG)</b>: Chromosome location of the DoG transcript.<b>dog_start_position</b>: Start position of the DoG transcript on the chromosome.<b>dog_end_position</b>: End position of the DoG transcript on the chromosome.<b>strand (DoG)</b>: Strand orientation of the DoG transcript.<b>sequence</b>: Nucleotide sequence of the DoG transcript.<b>mean-geneFPKM</b>: Average expression level (FPKM) of the gene across samples.<b>mean-dogFPKM</b>: Average expression level (FPKM) of the DoG transcript across samples.<b>tissue</b>: Tissue type from which the data was derived.<b>all-geneFPKM</b>: Expression levels (FPKM) of the gene across all samples.<b>all-dogFPKM</b>: Expression levels (FPKM) of the DoG transcript across all samples.<b>sample_ids</b>: Identifiers for the samples included in the dataset.<b>Symbol</b>: Official gene symbol for the DoG-associated gene.<b>Synonym</b>: Alternative names or synonyms for the gene.<b>Description</b>: Functional description of the gene.<b>DOG</b>: Unique identifier for the DoG transcript.This dataset provides comprehensive information about DoG transcripts, including their genomic locations, sequences, expression levels, and associated gene details across different samples and tissues.
DOI: 10.17632/b94xgzxsdm
title: Cost-effective and power-efficient portable turbine-based emergency ventilator

description: Ventilators have always been common in medical scenarios but very expensive to procure or develop. One of the main reasons for these is the components that are being used are expensive and require precise instrumentation, research, and development. This paper attempts to mitigate that problem by proposing a novel way to rapidly develop a portable ventilator that uses common 3D printing technology and off-the-shelf components. This turbine and valve-based ventilator feature most of the modes that are commonly used by healthcare professionals. A unique servo-based pressure release mechanism has been designed that makes the system around 36 times more efficient than solenoid-based systems. Reliability and efficiency have been increased further through the use of a novel positive end-expiratory pressure (PEEP) valve that does not contain any electromechanical component. Effective algorithms such as feed-forward and proportional–integral–derivative (PID) controllers were used alongside the unique ‘Sensor data filtration methodology’. The system also provides an interactive graphical user interface (GUI) via an android application that can be installed on any readily found tabs while the firmware manages the breathing detection algorithm using a flow meter and pressure sensor. This modular and portable ventilator also features a replaceable battery and holds the ability to run on solar power. This energy-efficient and low noise system can run for 5 to 6 hours at a stretch without needing to be connected to the main’s supply.
DOI: 10.17632/htd3gmy5pw
title: Liquidity Picking and Fund Performance

description: This replication package contains the code used to generate the results presented in the article "Liquidity Picking and Fund Performance", published in the Journal of Financial Economics. The package does not contain the original source data as this data is licensed but contains pseudo datasets that illustrate the structure of all data files. Those pseudo datasets contain random samples of the original data that have been anonymized to preserve data confidentiality. The package contains instruction documents on how to execute the code, starting from the raw data files to the final tables and figures presented in the article.