cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive109488.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109489.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109489.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109490.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0101194.10fu
title: SH0101194.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive109490.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109491.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0101195.10fu
title: SH0101195.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive109491.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109492.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0101196.10fu
title: SH0101196.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.c.3616367_d9
title: MOESM2 of Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants

description: Additional file 2: Table S2. Â Significantly differentially expressed Medicago truncatula genes (P-value &lt;0.05) between Control and LAP1 replicate sets, falling into hierarchical cluster 1.
DOI: 10.6084/m9.figshare.c.3616436_d8
title: Additional file 4: Table S3. of Identification of oncogenic driver mutations by genome-wide CRISPR-Cas9 dropout screening

description: First 1 000 most depleted genes for HCC-827 cell lines. This table shows the list of 1 000 most depleted genes in the HCC-827 cells along with their sgRNA fold changes at the days 14, 21 and 28. Gene expression of target genes is indicated as average FPKMs across 3 replicates. Cumulative scores are calculated as the sum of log2 FC scores obtained at either two or all three time points. Genes are ranked by the cumulative score obtained at all three time points (e.g. as the sum of log FC scores at days 14, 21 and 28 sorted in ascending order). Essential genes identified in recent genetic screens are reported. Genes expressed at low levels in the parental cell line (FPKM
DOI: 10.6084/m9.figshare.c.3616466_d2
title: MOESM3 of Leaf-residing Methylobacterium species fix nitrogen and promote biomass and seed production in Jatropha curcas

description: Additional file 3: Table S1. Complete table of taxonomic units (strains) derived from surface sterilized Jatropha tissues. Table includes, strains, cultivars, plant tissue, growth media, close relatives, pairwise similarity, class, GenBank ID number, nifH positive, endoglucanase and N-fixing activity. *EzBioCloud software to identify closely related type strains (Kim et al., 2012). The media 869, R2A and Kingâ  S B medium used for isolation of heterotrophic bacteria; AMS medium used for isolation of methylotrophic bacteria; N-free semisolid used for isolation of diazotrophic bacteria.
DOI: 10.5281/zenodo.14441818
title: Phylogenetic origin of morphologically cryptic species shapes co-occurrence and sympatry patterns

description: The Supporting Information dataset included in the paper entitled Phylogenetic origin of morphologically cryptic species shapes co-occurrence and sympatry patterns includes the following files:

Supporting Information 1. Species delimitation dataset: list of individuals sequenced for COI, origin of the samples, GenBank accession numbers and results of two delimitation methods.

Supporting Information 2. Phylogeny dataset: list of individuals used in phylogenetic analysis with respective markers sequenced, GenBank accession numbers and geographic origin of the samples.

Supporting Information 3. Niphargus rhenorhodanensis dataset: list of individuals belonging to N. rhenorhodanensis species complex, sequenced for COI, origin of the samples, GenBank accession numbers and results of two delimitation methods.

Supporting Information 4. Additional information to laboratory protocols, including Table S1.

Supporting Information 5. Data used in generalized model.

Supporting Information 6. Figure S2: Calibrated phylogeny of Niphargus.

Supporting Information 7. Table S2: A comparison of PTP and ASAP species delimitation.

Supporting Information 8. Supplementary figures to results:

Fig. S1: sampling locations.

Figs S2-S3: rarefaction curve and distribution of MLE per clade.

Figs S4-S5: distribution of pairwise sympatries with respect to time since the last ancestor and range sizes.

Figs. S6-S7: Altitudinal distribution of sympatries of clades and MOTUs.
DOI: 10.5281/zenodo.14441819
title: Phylogenetic origin of morphologically cryptic species shapes co-occurrence and sympatry patterns

description: The Supporting Information dataset included in the paper entitled Phylogenetic origin of morphologically cryptic species shapes co-occurrence and sympatry patterns includes the following files:

Supporting Information 1. Species delimitation dataset: list of individuals sequenced for COI, origin of the samples, GenBank accession numbers and results of two delimitation methods.

Supporting Information 2. Phylogeny dataset: list of individuals used in phylogenetic analysis with respective markers sequenced, GenBank accession numbers and geographic origin of the samples.

Supporting Information 3. Niphargus rhenorhodanensis dataset: list of individuals belonging to N. rhenorhodanensis species complex, sequenced for COI, origin of the samples, GenBank accession numbers and results of two delimitation methods.

Supporting Information 4. Additional information to laboratory protocols, including Table S1.

Supporting Information 5. Data used in generalized model.

Supporting Information 6. Figure S2: Calibrated phylogeny of Niphargus.

Supporting Information 7. Table S2: A comparison of PTP and ASAP species delimitation.

Supporting Information 8. Supplementary figures to results:

Fig. S1: sampling locations.

Figs S2-S3: rarefaction curve and distribution of MLE per clade.

Figs S4-S5: distribution of pairwise sympatries with respect to time since the last ancestor and range sizes.

Figs. S6-S7: Altitudinal distribution of sympatries of clades and MOTUs.
DOI: 10.6084/m9.figshare.c.3616472_d1
title: Additional file 4: of The efficacy of nudge theory strategies in influencing adult dietary behaviour: a systematic review and meta-analysis

description: Data extraction. (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.c.3616436_d9
title: Additional file 5: Table S4. of Identification of oncogenic driver mutations by genome-wide CRISPR-Cas9 dropout screening

description: First 1 000 most depleted genes for CHP-212 cell lines. This table shows the list of 1 000 most depleted genes in the CHP-212 cells along with their sgRNA fold changes at the days 14, 21 and 28. Gene expression of target genes is indicated as average FPKMs across 3 replicates. Cumulative scores are calculated as the sum of log2 FC scores obtained at either two or all three time points. Genes are ranked by the cumulative score obtained at all three time points (e.g. as the sum of log FC scores at days 14, 21 and 28 sorted in ascending order). Essential genes identified in recent genetic screens are reported. Genes expressed at low levels in the parental cell line (FPKM
DOI: 10.15468/dl.h7g3tz
title: Occurrence Download

description: A dataset containing 9357 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crematogaster scutellaris (Olivier, 1792)"
 ]
}

 The dataset includes 9357 records from 218 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033173-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616559_d2
title: Additional file 1: of Copayment and recommended strategies to mitigate its impacts on access to emergency medical services under universal health coverage: a case study from Thailand

description: Interview Question Guideline. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3616556_d6
title: Additional file 8: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: miRNAs and their targets only identified dwarf mutant (A1) or tall-mutant (A3). (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3616574_d1
title: MOESM5 of The role of antigen presenting cells in the induction of HIV-1 latency in resting CD4+ T-cells

description: Additional file 5: TableÂ S2. Comparison of gene expression between latency inducing and non-inducing antigen presenting cell subpopulations using microarray. Using the bioinformatics databases DAVID, GeneCards and GeneCodis, gene expression compartment and function was determined. Genes expressed on the antigen presenting cell (APC)-surface with the ability to signal to T-cells were shortlisted.
DOI: 10.6084/m9.figshare.c.3616556_d7
title: Additional file 4: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: Novel miRNA identified in all libraries. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3616556_d8
title: Additional file 5: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: Predicted targets of miRNAs different expressed between dwarf mutant (A1) and wild-type (A9). (XLSX 86 kb)
DOI: 10.6084/m9.figshare.c.3616607_d2
title: MOESM1 of Long-term variability in sugarcane bagasse feedstock compositional methods: sources and magnitude of analytical variability

description: Additional file 1. Comma separated value (.csv) file containing bagasse compositional value data used in this analysis.
DOI: 10.6084/m9.figshare.c.3616613_d1
title: Additional file 8: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

description: Predicted mRNA Targets of Differentially Expressed miRNAs in Milk Exosomes. (XLSX 2115 kb)
DOI: 10.6084/m9.figshare.c.3616619_d1
title: Additional file 1: of Production results from piglets vaccinated in a field study in Spain with a Type 1 Porcine Respiratory and Reproductive virus modified live vaccine

description: ORF5 sequence of the PRRSv field strain. (TXT 641 bytes)
DOI: 10.6084/m9.figshare.c.3616706_d1
title: Additional file 1: of Chronic exposure to particulate matter and risk of cardiovascular mortality: cohort study from Taiwan

description: Population size, area and cohort representation by districts in the Greater Taipei Area, Taiwan. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3616772_d1
title: Additional file 1: Table S1. of The phylogenetic significance of leaf anatomical traits of southern African Oxalis

description: Discrete and continuous leaflet anatomical data for southern African Oxalis. The discrete and continuous data of all studied leaflet anatomical traits. Captions of columns for discrete data include character state descriptions and captions of columns for continuous data include units (when applicable). (XLSX 143Â kb)
DOI: 10.4228/zalf.2002.120
title: Weather Data 2002, Muencheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz-Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis. The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type. In 2002, data have been collected for: soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soil temperatur in 50cm depth (°C); soil temperatur in 10cm depth (°C); soil temperatur in 100cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 2m above ground (°C); precipitation (mm); wind velocity (m/s); evaporation (mm)
DOI: 10.6084/m9.figshare.c.3616772_d2
title: Additional file 2: Table S2. of The phylogenetic significance of leaf anatomical traits of southern African Oxalis

description: The list of newly-collected taxa added to the phylogeny of Oberlander et al. (2011). Description of data: Phylogenetic trees were reconstructed using an expanded ITS data set from Oberlander et al. (2011) [19], including sequences from 13 newly-collected taxa. Species names, MO-accession numbers, source-origin and GenBank accession data are included. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3616775_d1
title: Additional file 4: Table S4. of Transcriptome profiling of Kentucky bluegrass (Poa pratensis L.) accessions in response to salt stress

description: Prioritized differentially expressed transcripts from shoot tissue, BLASTx-based annotation, GO terms, and average normalized expression values of two Kentucky bluegrass accessions under control and salt treated conditions. (XLSX 90Â kb)
DOI: 10.6084/m9.figshare.c.3616775_d2
title: Additional file 3: Table S3. of Transcriptome profiling of Kentucky bluegrass (Poa pratensis L.) accessions in response to salt stress

description: Prioritized differentially expressed transcripts from root tissue, BLASTx-based annotation, GO terms, and average normalized expression values of two Kentucky bluegrass accessions under control and salt treated conditions. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3616859_d1
title: Additional file 1: of The associations between sedentary behaviour and mental health among adolescents: a systematic review

description: Methodological quality assessment checklist (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3616868_d1
title: Additional file 3 of Aligning the unalignable: bacteriophage whole genome alignments

description: Detailed comparison of Alpha and Mauve alignments for the four S. aureus phages phiETA3, phiNM2, phiNM1 and B236. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.c.3616877_d1
title: Additional file 1: Table S1. of A census of Îą-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea

description: Phage dataset. Counts for the numbers of proteins, TM proteins, and proteins conserved in POGs for each genome in the dataset. (XLSX 325Â kb)
DOI: 10.6084/m9.figshare.c.3616868_d3
title: Additional file 1 of Aligning the unalignable: bacteriophage whole genome alignments

description: Regions in which gapless alignments predicted by Alpha are contested by Clustal Omega, T-Coffee or Muscle. (ZIP 32 kb)
DOI: 10.6084/m9.figshare.c.3616937_d1
title: Additional file 1: of Epistatic interactions associated with fatty acid concentrations of beef from angus sired beef cattle

description: Supplemental Data (TAGFAinteractions.xlsx, PLFAinteractions.xlsx, and CarcassInteractions.xlsx) and Figures (Circos Plots). (ZIP 22719Â kb)
DOI: 10.6084/m9.figshare.c.3616943_d1
title: MOESM5 of 50Â years of amino acid hydrophobicity scales: revisiting the capacity for peptide classification

description: Additional file 5: Table S4. Amino acid pattern of length 4. Given is the sequence pool 1 (column 1) and sequence pool 2 (column 2), the separation capacity between pools based on hydrophobicity (column 3), the maximal difference in the frequency of occurrence (FO) pattern value (column 4), the minimal difference in the FO pattern value (column 5), the number of overrepresented pattern from pool1 in contrast to pool2 (column 6) and the top 5 of identified pattern of length 4.
DOI: 10.6084/m9.figshare.c.3616943_d2
title: MOESM2 of 50Â years of amino acid hydrophobicity scales: revisiting the capacity for peptide classification

description: Additional file 2: Table S2. Correlation of hydrophobicity scales. Given is the correlation matrix of the 98 hydrophobicity scales based on the hydrophobicity values of the 20 amino acids. The name of the scale (column 1 and line 1) as well as the index of the scales (column 2 and line 2) is given.
DOI: 10.4228/zalf.2003.121
title: Weather Data 2003, Muencheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz-Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis. The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type. In 2003, data have been collected for: soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soil temperatur in 50cm depth (°C); soil temperatur in 10cm depth (°C); soil temperatur in 100cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 2m above ground (°C); precipitation (mm); wind velocity (m/s); evaporation (mm)
DOI: 10.15468/dl.y8j9va
title: Occurrence Download

description: A dataset containing 6930 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Living Specimen)",
 "TaxonKey is Chrysomya Robineau-Desvoidy, 1830"
 ]
}

 The dataset includes 6930 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033174-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.magjpr
title: Occurrence Download

description: A dataset containing 9310665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9310665 records from 2494 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033171-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wl5wm2
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Hedwigia ciliata f. ciliata",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 124 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000524-170817152713382/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rqywa
title: Occurrence Download

description: A dataset containing 944 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchoglossum obliquum Blume"
 ]
}

 The dataset includes 944 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000524-170822121629195/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8gqct
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senecio keniophytum R.E.Fr."
 ]
}

 The dataset includes 62 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004997-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r5q54k
title: Occurrence Download

description: A dataset containing 29217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 29217 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001270-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.