cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10001928
title: Dynamic social interactions and keystone species shape the diversity and stability of mixed-species biofilms – an example from dairy isolates - Dataset

description: We previously reported a bacterial four-species biofilm model comprising Stenotrophomonas rhizophila (SR), Bacillus licheniformis (BL), Microbacterium lacticum (ML), and Calidifontibacter indicus (CI) that were isolated from the surface of a dairy pasteuriser after cleaning and disinfection. These bacteria produced 3.13-fold more biofilm mass compared to the sum of biofilm masses in monoculture (https://doi.org/10.3389/fmicb.2023.1159434). In a subsequent experiment we confirmed that the observed community synergy resulted from dynamic social interactions among various species pairs, encompassing commensalism, exploitation, and amensalism. M. lacticum appeared to be the keystone species as it increased the growth of all other species that led to the synergy in biofilm mass. Interactions among the other three species (in the absence of M. lacticum) also contributed towards the synergy in biofilm mass. Bacterial cell-free-supernatants were also investigated to assess the nature of the observed synergy. The first four sheets of the Excel file contain raw cell count data for the four species (SR, BL, ML, and CI), recorded every 4 h over a 24 h period on the surface of stainless steel (SS) in the presence of brain-heart-infusion (BHI) medium and skim-milk (SM). Data related to individual bacterial cell counts in various mixed-species biofilms are also presented. These biofilms were developed on SS in BHI for h.  Data related to bacterial biofilm masses in different mixed-species biofilm combinations are also presented, showcasing the effect of replacing one strain with its CFS. Species written in red indicate that their CFS was used, not their viable form.
DOI: 10.6084/m9.figshare.16655667
title: Additional file 3 of Runs of homozygosity analysis reveals consensus homozygous regions affecting production traits in Chinese Simmental beef cattle

description: Additional file 3:
DOI: 10.6084/m9.figshare.16655667.v1
title: Additional file 3 of Runs of homozygosity analysis reveals consensus homozygous regions affecting production traits in Chinese Simmental beef cattle

description: Additional file 3:
DOI: 10.6084/m9.figshare.8267087
title: Additional file 15: of Evolution and comparative genomics of the most common Trichoderma species

description: Extracellular proteolytic enzymes in Trichoderma. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8267087.v1
title: Additional file 15: of Evolution and comparative genomics of the most common Trichoderma species

description: Extracellular proteolytic enzymes in Trichoderma. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8791379
title: Risk factors for intracranial hemorrhage after mechanical thrombectomy: a systematic review and meta-analysis

description: <b>Background</b>: Intracerebral hemorrhage (ICH) is the most feared complication of mechanical thrombectomy (MT). This study aims to provide a comprehensive overview of ICH risk factors. <b>Methods</b>: The authors systematically searched Pubmed and Embase (from inception to November 2018) for studies evaluating independent predictors for symptomatic ICH (sICH), parenchymal hematoma (PH), hemorrhagic infarction (HI), and any ICH after MT. <b>Results</b>: This analysis included a total of 42 studies involving 10,001 patients. The combined rate was 8% (7–10%) for sICH, 13% (10–15%) for PH, 25% (20–29%) for HI, and 35% (31–39%) for any ICH. Meta-analysis identified the following predictors of sICH: female sex (OR 2.98, 95%CI 1.23–7.25, I<sup>2</sup> = 26.3%), treatment interval (OR 1.01, 95%CI 1–1.03, I<sup>2</sup> = 69.20%), tirofiban use (OR 3.16, 95%CI 2.11–4.73, I<sup>2</sup> = 0%), and ASPECTS score on admission (OR 0.63, 95%CI 0.54–0.74, I<sup>2</sup> = 0%). Predictors of any ICH were diabetes mellitus (OR 1.95, 95%CI 1.29–2.94, I<sup>2</sup> = 35.7%), deep white matter on diffusion-weighted imaging (OR 3.11, 95%CI 1.56–6.20, I<sup>2</sup> = 0%), and intravenous recombinant tissue plasminogen activator (rt-PA) (OR 2.57, 95%CI 1.28–5.17, I<sup>2</sup> = 0%). <b>Conclusion</b>: Many predictors of ICH were identified, however, given the lack of robust evidence, larger cohort studies should be prioritized to confirm these predictors.
DOI: 10.6084/m9.figshare.8791379.v1
title: Risk factors for intracranial hemorrhage after mechanical thrombectomy: a systematic review and meta-analysis

description: <b>Background</b>: Intracerebral hemorrhage (ICH) is the most feared complication of mechanical thrombectomy (MT). This study aims to provide a comprehensive overview of ICH risk factors. <b>Methods</b>: The authors systematically searched Pubmed and Embase (from inception to November 2018) for studies evaluating independent predictors for symptomatic ICH (sICH), parenchymal hematoma (PH), hemorrhagic infarction (HI), and any ICH after MT. <b>Results</b>: This analysis included a total of 42 studies involving 10,001 patients. The combined rate was 8% (7–10%) for sICH, 13% (10–15%) for PH, 25% (20–29%) for HI, and 35% (31–39%) for any ICH. Meta-analysis identified the following predictors of sICH: female sex (OR 2.98, 95%CI 1.23–7.25, I<sup>2</sup> = 26.3%), treatment interval (OR 1.01, 95%CI 1–1.03, I<sup>2</sup> = 69.20%), tirofiban use (OR 3.16, 95%CI 2.11–4.73, I<sup>2</sup> = 0%), and ASPECTS score on admission (OR 0.63, 95%CI 0.54–0.74, I<sup>2</sup> = 0%). Predictors of any ICH were diabetes mellitus (OR 1.95, 95%CI 1.29–2.94, I<sup>2</sup> = 35.7%), deep white matter on diffusion-weighted imaging (OR 3.11, 95%CI 1.56–6.20, I<sup>2</sup> = 0%), and intravenous recombinant tissue plasminogen activator (rt-PA) (OR 2.57, 95%CI 1.28–5.17, I<sup>2</sup> = 0%). <b>Conclusion</b>: Many predictors of ICH were identified, however, given the lack of robust evidence, larger cohort studies should be prioritized to confirm these predictors.
DOI: 10.6084/m9.figshare.8267102
title: Additional file 1: of Evolution and comparative genomics of the most common Trichoderma species

description: Abundancy of genes for Trichoderma species in GenBank. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8267102.v1
title: Additional file 1: of Evolution and comparative genomics of the most common Trichoderma species

description: Abundancy of genes for Trichoderma species in GenBank. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8267105
title: Additional file 20: of Evolution and comparative genomics of the most common Trichoderma species

description: Evolution of the orphan genes present in the Trichoderma core genome. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8267105.v1
title: Additional file 20: of Evolution and comparative genomics of the most common Trichoderma species

description: Evolution of the orphan genes present in the Trichoderma core genome. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8267108
title: Additional file 21: of Evolution and comparative genomics of the most common Trichoderma species

description: Ascomycete genomes that were used in this study as a comparison to Trichoderma. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8267108.v1
title: Additional file 21: of Evolution and comparative genomics of the most common Trichoderma species

description: Ascomycete genomes that were used in this study as a comparison to Trichoderma. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.16655721
title: Additional file 7 of Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet

description: Additional file 7.
DOI: 10.6084/m9.figshare.16655721.v1
title: Additional file 7 of Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet

description: Additional file 7.
DOI: 10.6084/m9.figshare.16655727
title: Additional file 9 of Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet

description: Additional file 9.
DOI: 10.6084/m9.figshare.8267120
title: Additional file 3: of Evolution and comparative genomics of the most common Trichoderma species

description: Manually annotated genomes of T. reesei and T. hamatum. (XLSX 982 kb)
DOI: 10.6084/m9.figshare.8267120.v1
title: Additional file 3: of Evolution and comparative genomics of the most common Trichoderma species

description: Manually annotated genomes of T. reesei and T. hamatum. (XLSX 982 kb)
DOI: 10.6084/m9.figshare.16655727.v1
title: Additional file 9 of Genome-wide identification and characterization of the BES/BZR gene family in wheat and foxtail millet

description: Additional file 9.
DOI: 10.6084/m9.figshare.16655736
title: Additional file 10 of Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated

description: Additional file 10: Table S5. List of 4410 DETs.
DOI: 10.6084/m9.figshare.11937147
title: Additional file 1 of A novel TLR7 agonist as adjuvant to stimulate high quality HBsAg-specific immune responses in an HBV mouse model

description: Additional file 1: Table S1. Complete list of DEGs in Raw 264.7 cells treated with T7-EA and T7. All genes had an absolut fold-change (FC) &gt;2 and a false discovery rate (FDR) &lt;0.05 in T7-EA vs T7 group, and passed a low-expression filter.
DOI: 10.6084/m9.figshare.11937147.v1
title: Additional file 1 of A novel TLR7 agonist as adjuvant to stimulate high quality HBsAg-specific immune responses in an HBV mouse model

description: Additional file 1: Table S1. Complete list of DEGs in Raw 264.7 cells treated with T7-EA and T7. All genes had an absolut fold-change (FC) &gt;2 and a false discovery rate (FDR) &lt;0.05 in T7-EA vs T7 group, and passed a low-expression filter.
DOI: 10.6084/m9.figshare.16655739
title: Additional file 11 of Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated

description: Additional file 11: Table S6. GO enrichment analysis for 4410 DETs.
DOI: 10.6084/m9.figshare.16655739.v1
title: Additional file 11 of Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated

description: Additional file 11: Table S6. GO enrichment analysis for 4410 DETs.
DOI: 10.6084/m9.figshare.16655736.v1
title: Additional file 10 of Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated

description: Additional file 10: Table S5. List of 4410 DETs.
DOI: 10.6084/m9.figshare.16655742
title: Additional file 12 of Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated

description: Additional file 12: Table S7. KEGG enrichment analysis for 4410 DETs.
DOI: 10.6084/m9.figshare.16655742.v1
title: Additional file 12 of Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated

description: Additional file 12: Table S7. KEGG enrichment analysis for 4410 DETs.
DOI: 10.6084/m9.figshare.8267144
title: Additional file 6: of Evolution and comparative genomics of the most common Trichoderma species

description: OrthoMCL clusters of proteins encoded by Trichoderma and other fungi. (XLSX 6578 kb)
DOI: 10.6084/m9.figshare.8267144.v1
title: Additional file 6: of Evolution and comparative genomics of the most common Trichoderma species

description: OrthoMCL clusters of proteins encoded by Trichoderma and other fungi. (XLSX 6578 kb)
DOI: 10.6084/m9.figshare.8267153
title: Additional File 7:

description: OrthoMCL clusters shared between Trichoderma and other Sordariomycete fungi. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.16655751
title: Additional file 14 of Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated

description: Additional file 14: Table S9. Details regarding TFs.
DOI: 10.6084/m9.figshare.16655751.v1
title: Additional file 14 of Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated

description: Additional file 14: Table S9. Details regarding TFs.
DOI: 10.15468/dl.gfthvf
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Rhynchobatus djiddensis (Forsskål, 1775)"
 ]
}

 The dataset includes 19 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0411222-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djdite
title: Occurrence Download

description: A dataset containing 676 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 4) Distribution of planktonic foraminifera in middle Miocene sediments of DSDP Hole 94-608 in the North Atlantic"
 ]
}

 The dataset includes 676 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000193-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksa8uw
title: Occurrence Download

description: A dataset containing 489 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Larkinia grandis (Broderip & G.B.Sowerby I, 1829)"
 ]
}

 The dataset includes 489 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004081-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtsemw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pabstiella osculator Luer & Toscano"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182471-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5eedsr
title: Occurrence Download

description: A dataset containing 1119 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "Country is United States of America",
 "GadmGid is USA.25_1",
 "Geometry POLYGON((-185.70859 4.05887,-16.29141 4.05887,-16.29141 71.94113,-185.70859 71.94113,-185.70859 4.05887))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus pensylvanicus (De Geer, 1773)"
 ]
}

 The dataset includes 1119 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044516-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.maszzr
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Caiophora rusbyana Urb. & Gilg, 1893",
 "TaxonKey is Caiophora rusbyana Urb. & Gilg ex Rusby"
 ]
}

 The dataset includes 19 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000193-170817152713382/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scqync
title: Occurrence Download

description: A dataset containing 1487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-23.46194 27.62309,68.46194 27.62309,68.46194 64.37691,-23.46194 64.37691,-23.46194 27.62309))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Neomys anomalus Cabrera, 1907",
 "Year 2000-2022"
 ]
}

 The dataset includes 1487 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000834-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbxnbd
title: Occurrence Download

description: A dataset containing 22666 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Euphorbia esula L.",
 "TaxonKey is Euphorbia esula Forssk., 1775",
 "TaxonKey is Euphorbia esula M.Bieb., 1808",
 "TaxonKey is Euphorbia esula Kotschy",
 "TaxonKey is Euphorbia esula Ten.",
 "TaxonKey is Euphorbia esula Pollich, 1777",
 "TaxonKey is Euphorbia esula Kotschy ex Boiss., 1862"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 22666 records from 186 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000193-170821155850132/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vj4r6y
title: Occurrence Download

description: A dataset containing 873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phrynosoma coronatum (Blainville, 1835)"
 ]
}

 The dataset includes 873 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137640-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxy8gd
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.28_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Plestiodon obsoletus Baird & Girard, 1852"
 ]
}

 The dataset includes 41 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000839-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ipomc8
title: Occurrence Download

description: A dataset containing 79172 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peromyscus leucopus (Rafinesque, 1818)"
 ]
}

 The dataset includes 79172 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000193-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.34jzy7
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Centruroides elegans (Thorell, 1876)"
 ]
}

 The dataset includes 310 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137665-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a62c8w
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monticalia flocculidens (Sch.Bip. ex Wedd.) C.Jeffrey"
 ]
}

 The dataset includes 37 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182472-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rx3gwr
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera onca (Linnaeus, 1758)",
 "Year is 2022"
 ]
}

 The dataset's 1 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000837-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9udth
title: Occurrence Download

description: A dataset containing 36509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-169.94531 65.42539,-173.32031 -53.0782,-70.3828 -55.05823,-67.5703 -14.33252,-74.8828 4.0747,-105.82031 28.18051,-120.44531 49.01479,-135.07031 61.13475,-169.94531 65.42539))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Amphipoda"
 ]
}

 The dataset includes 36509 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137674-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkpri2
title: Occurrence Download

description: A dataset containing 2629628 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Continuous Plankton Recorder Dataset (SAHFOS)"
 ]
}

 The dataset includes 2629628 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000193-171020152545675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5upnd
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paspalum robustum (Hitchc. & Chase) S.Denham"
 ]
}

 The dataset includes 130 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182474-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vr8gsc
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ogilbia pearsei (Hubbs, 1938)"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059103-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jeb7ed
title: Occurrence Download

description: A dataset containing 702 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Hedyosmum mexicanum Cordem. ex Baill."
 ]
}

 The dataset includes 702 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000193-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vds49p
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peperomia epipetrica Callejas"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182473-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uzptzm
title: Occurrence Download

description: A dataset containing 10261 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leccinum scabrum (Bull.) Gray, 1821"
 ]
}

 The dataset includes 10261 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000781-150304104939900/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.