cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13872683.v1
title: Impact of Amplification Efficiency on TL Measurement via qPCR

description: Comparison of methods to calculate telomere length (TL). In this project we compared how amplification efficiency estimates derived from the Rotor-Gene Q rotary thermocylcer instrument compared to those generated using LinRegPCR. Furthermore, we compared how resulting T/S ratios calculated using these different approaches compared in their performance with external validity metrics.<br>Replicate level dataset hosts Ct values, T and S estimates, and related metrics of these values such as standard deviation and coefficient of variation across replicate reactions. <br>Sample level dataset contains T/S ratios generated from summarized results in replicate level dataset. Each row contains the T/S ratio of a given individual at a given time point. Some rows also contain paired T/S ratios from blood and buccal samples that were collected at the same time point for cross tissue comparisons. <br>Plate level dataset contains efficiency estimates for the various approaches utilized in the manuscript text. These include efficiencies estimated by the RotorGene Q standard curve, LinRegPCR log-linear reconstruction, and LinRegPCR standard curve. <br>Matched dataset contains T/S ratios of individuals nested by family ID for up to three generations within a family. Each row contains a parent-offspring pair. In some cases a single parent is represented on more than one row as some parents had multiple offspring. <br>Together these datasets comprise all the data used to generate the findings reported in the publication linked below.
DOI: 10.5281/zenodo.5153906
title: Data Sets and Results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"

description: Data sets and results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"<br> <br> The file "dna_binding_protein_sequences.zip" has the training and testing sets from the paper:<br> <br> RLL - "random_&lt;train/test&gt;_full_1000.csv"<br> RSL - "random_&lt;train/test&gt;_40.csv"<br> RS&LL - "random_&lt;train/test&gt;_40_1000.csv"<br> RLL where included positive examples have verified DNA binding activity - "random_&lt;train/test&gt;_hq_1000.csv"<br> The 10 RS&LL data sets - "random_&lt;train/test&gt;_40_1000.csv" + "random_&lt;train/test&gt;_40_1000_cv_&lt;0-8&gt;.csv" The results files are named similarly. See "see_results.ipynb" in the codebase that supplement these data sets<br> The species data sets are derived from "uniprot_data_bac.tab" and "uniprot_data_not_bac.tab." See code. <br> <br> The ESM embeddings used by the XGBoost model are in "dna_binding_protein_esm.zip"
DOI: 10.5281/zenodo.5137961
title: Data Sets and Results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"

description: Data sets and results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"<br> <br> The file "dna_binding_protein_sequences.zip" has the training and testing sets from the paper:<br> <br> RLL - "random_&lt;train/test&gt;_full_1000.csv"<br> RSL - "random_&lt;train/test&gt;_40.csv"<br> RS&LL - "random_&lt;train/test&gt;_40_1000.csv"<br> RLL where included positive examples have verified DNA binding activity - "random_&lt;train/test&gt;_hq_1000.csv"<br> The 10 RS&LL data sets - "random_&lt;train/test&gt;_40_1000.csv" + "random_&lt;train/test&gt;_40_1000_cv_&lt;0-8&gt;.csv" The results files are named similarly. See "see_results.ipynb" in the codebase that supplement these data sets<br> The species data sets are derived from "uniprot_data_bac.tab" and "uniprot_data_not_bac.tab." See code. <br> <br> The ESM embeddings used by the XGBoost model are in "dna_binding_protein_esm.zip"
DOI: 10.6084/m9.figshare.14417225.v2
title: Ti38V15Nb23Hf24

description: The training and validation dataset (in numpy format) for variational autoencoders based order parameter for Ti38V15Nb23Hf24 alloy. Each data sample is a system configuration with the sampled temperature provided in the corresponding label file.
DOI: 10.5517/ccdc.csd.cc253jhb
title: CCDC 1999391: Experimental Crystal Structure Determination

description: Related Article: Chao Gu, Yanyun Ding, Xinghua Quan, Mengyao Gong, Jiulong Yu, Dian Zhao, Chunxia Li|2020|J.Rare Earths|39|1024|doi:10.1016/j.jre.2020.07.011
DOI: 10.6073/pasta/2c8aa85221d2193ccbec4b84b73a61dd
title: MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Fishes, ongoing since 2005 (Reformatted to a Darwin Core Archive)

description: This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/125/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-mcr/6/58. The abstract below was extracted from the Level 0 data package and is included for context: These data describe the species abundance and size distributions of fishes surveyed as part of MCR LTER's annual reef fish monitoring program. This study began in 2005 and the dataset is updated annually. The abundances of all mobile taxa of fishes (Scarids, Labrids, Acanthurids, Serranids, etc.) observed on a five by fifty meter transect which extends from the bottom to the surface of the water column are recorded by a diver using SCUBA. The diver then swims back along a one by fifty meter section of the original transect line and records the abundances of all non-mobile or cryptic taxa of fishes (Pomacentids, Gobiids, Cirrhitids, Holocentrids etc). Surveys are conducted between 0900 and 1600 hours (Moorea time) during late July or early August each year. In 2006, divers also began to estimate the size (length) of each fish observed to the nearest half cm. Four replicate transects are surveyed in each of six locations on the forereef (two on each of Moorea's three sides), six locations on the backreef (two on each of Moorea's three sides) and on six locations on the fringing reef (two on each of Moorea's three sides) for a total of 72 individual transects. Transects are permanently marked using a series of small, stainless steel posts affixed to the reef. Transects on the forereef are located at a depth of approximately 12m, those on the backreef are located at a depth of approximately 1.5m and those on the fringing reef are located at a depth of approximately 10m. In addition to the biotic data collected, divers also record data on the date and time each transect was surveyed, wind speed and sea state, swell height in m, amount of cloud cover in % and horizontal visability in m. This monitoring program is consistent with the protocols adopted by the Global Coral Reef Monitoring Network and the Australian Institute of Marine Science for use with the Great Barrier Reef Long-term Monitoring Program. This material is based upon work supported by the U.S. National Science Foundation under Grant No. OCE 16-37396 (and earlier awards) as well as a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2020). This work represents a contribution of the Moorea Coral Reef (MCR) LTER Site.
DOI: 10.25612/837.n2m4xgb40g0z
title: Household Pulse Survey Data

description: Curated aggregated data from an online survey conducted by the US Census Bureau on the socioeconomic impact of COVID-19 on households. Includes survey responses from collection periods 1-33 (4/23/2020-07/05/2021).
DOI: 10.5281/zenodo.5074929
title: Genome-wide association study identifies 18 novel loci associated with left atrial volume and function

description: <strong>README</strong> Publication: Genome-wide association study identifies 18 novel loci associated with left atrial volume and function Ahlberg and Andreasen et al. Published: 29 July 2021, doi: https://doi.org/10.1093/eurheartj/ehab466 summary statistics for LAmax: rntrn_ilamax.bgen.stats.betastd.tsv.gz <br> summary statistics for LAmin: rntrn_ilamin.bgen.stats.betastd.tsv.gz <br> summary statistics for LAAEF: rntrn_laaef.bgen.stats.betastd.tsv.gz <br> summary statistics for LAPEF: rntrn_lapef.bgen.stats.betastd.tsv.gz <br> summary statistics for LATEF: rntrn_latef.bgen.stats.betastd.tsv.gz Description: SNP: rs number or ID string<br> CHR: chromosome<br> BP: physical (base pair) position<br> GENPOS: genetic position either from bim file or interpolated from genetic map<br> ALLELE1: first allele in bim file (usually the minor allele), used as the effect allele<br> ALLELE0: second allele in bim file, used as the reference allele<br> A1FREQ: frequency of first allele<br> F_MISS: fraction of individuals with missing genotype at this SNP<br> BETA: effect size from BOLT-LMM approximation to infinitesimal mixed model<br> SE: standard error of effect size<br> P_BOLT_LMM_INF: infinitesimal mixed model association test p-value<br> P_BOLT_LMM: non-infinitesimal mixed model association test p-value<br> N: sample size <br> bstd: standardized effect size from BOLT-LMM <br> sestd: standardized standard error of effect size
DOI: 10.5281/zenodo.5074928
title: Genome-wide association study identifies 18 novel loci associated with left atrial volume and function

description: <strong>README</strong> Publication: Genome-wide association study identifies 18 novel loci associated with left atrial volume and function Ahlberg and Andreasen et al. Published: 29 July 2021, doi: https://doi.org/10.1093/eurheartj/ehab466 summary statistics for LAmax: rntrn_ilamax.bgen.stats.betastd.tsv.gz <br> summary statistics for LAmin: rntrn_ilamin.bgen.stats.betastd.tsv.gz <br> summary statistics for LAAEF: rntrn_laaef.bgen.stats.betastd.tsv.gz <br> summary statistics for LAPEF: rntrn_lapef.bgen.stats.betastd.tsv.gz <br> summary statistics for LATEF: rntrn_latef.bgen.stats.betastd.tsv.gz Description: SNP: rs number or ID string<br> CHR: chromosome<br> BP: physical (base pair) position<br> GENPOS: genetic position either from bim file or interpolated from genetic map<br> ALLELE1: first allele in bim file (usually the minor allele), used as the effect allele<br> ALLELE0: second allele in bim file, used as the reference allele<br> A1FREQ: frequency of first allele<br> F_MISS: fraction of individuals with missing genotype at this SNP<br> BETA: effect size from BOLT-LMM approximation to infinitesimal mixed model<br> SE: standard error of effect size<br> P_BOLT_LMM_INF: infinitesimal mixed model association test p-value<br> P_BOLT_LMM: non-infinitesimal mixed model association test p-value<br> N: sample size <br> bstd: standardized effect size from BOLT-LMM <br> sestd: standardized standard error of effect size
DOI: 10.25919/7h1j-cq19
title: Parkes pulsar observations with undefined project IDs for 2021APRS_08

description: Parkes pulsar observations with undefined project IDs for 2021APRS. This collection contains observations from project ID PX074.
DOI: 10.25919/s4jr-zq35
title: Parkes observations for project P1032 semester 2021APRS_11

description: This project aims to continue to perform rapid measurements of relativistic parameters of southern binary pulsar systems using data from the Parkes Ultra Wideband Low (UWL) receiver and the MeerKAT telescope thereby enabling measurement of their component masses and in some cases, test theories of gravity. We will use the UWL data to obtain significant orbital coverage and timing baseline on these pulsars and obtain important constraints on orbital and temporal DM variations that will help in identifying the nature of the companion star. We will then use MeerKAT data at crucial orbital phases to improve our chances of measuring the relativistic parameters. Increase in the number of measured NS masses has profound implications for NS internal structure and for stellar and binary evolution physics. From this semester, we are converting this proposal into a ``Large project" proposal.
DOI: 10.25919/j3v5-k528
title: Parkes pulsar observations with undefined project IDs for 2021APRS_09

description: Parkes pulsar observations with undefined project IDs for 2021APRS. This collection contains observations from project ID PX074.
DOI: 10.5066/p93f6kqs
title: Colorado River at Compact Point near Lees Ferry, AZ - 2021/03/18 Water Surface Velocity Map Using Particle Image Velocimetry

description: The dataset consists of a shapefile of measurements of surface velocity magnitude and direction at the Colorado River at Compact Point near Lees Ferry, AZ, on March 18, 2021. The dataset contains approximately 1.2 km of river length. The surface velocity measurements were made by applying Large-Scale Particle Image Velocimetry (LSPIV) techniques, using overlapping videos collected by small Unmanned Aircraft Systems (sUAS). Total time to capture all videos was less than one hour, and all frames (except frame 1, see Process Steps below) from all videos were used. Additional attributes, including divergence, curl, shear, and strain, were calculated from the surface velocity measurements and are included in the dataset.
DOI: 10.5281/zenodo.5154039
title: Usibility Test for User friendly interaction in intelligent digital assistance systems.

description: Te Interview for usability test.
DOI: 10.5281/zenodo.5036559
title: Usibility Test for User friendly interaction in intelligent digital assistance systems.

description: Te Interview for usability test.
DOI: 10.3886/e146701
title: COVID-19 MIGRATION

description: ABSTRACT COVID-19 has significantly affected the real estate industry. In Montana, an out-of-state buyer influx was anecdotally noted; a descriptive research study developed, and a survey of Montana realtors found 77.4% of realtors reported an increase in out-of-state buyer interest and closing; a significant number were noted to be coming from California, Washington, and Colorado for housing purchases between February and August 2020. Reasons for relocation efforts included predominately safety & security and COVID-19 related concerns. The research addresses the increase in real estate closings within the state, reasons for relocation, and addresses managerial implications for the findings relating to advertising, tourism, and contactless shopping used within this industry. Additional implications focus on the importance of contactless showings, national visibility (especially in specific states), and tourism focusing on stated reasons for relocation. The paper findings support a more focused understanding on who is moving to Montana during the COVID-19 pandemic and why they are relocating. These findings will help both real estate advertising campaigns and tourism industries with an understanding stated buyer motivation, which allows for a focus when pitching Montana for relocation and tourism.
DOI: 10.3886/e146701v1
title: COVID-19 MIGRATION

description: ABSTRACT COVID-19 has significantly affected the real estate industry. In Montana, an out-of-state buyer influx was anecdotally noted; a descriptive research study developed, and a survey of Montana realtors found 77.4% of realtors reported an increase in out-of-state buyer interest and closing; a significant number were noted to be coming from California, Washington, and Colorado for housing purchases between February and August 2020. Reasons for relocation efforts included predominately safety & security and COVID-19 related concerns. The research addresses the increase in real estate closings within the state, reasons for relocation, and addresses managerial implications for the findings relating to advertising, tourism, and contactless shopping used within this industry. Additional implications focus on the importance of contactless showings, national visibility (especially in specific states), and tourism focusing on stated reasons for relocation. The paper findings support a more focused understanding on who is moving to Montana during the COVID-19 pandemic and why they are relocating. These findings will help both real estate advertising campaigns and tourism industries with an understanding stated buyer motivation, which allows for a focus when pitching Montana for relocation and tourism.
DOI: 10.5281/zenodo.5152222
title: Cryptic Diversity in Cladosporium cladosporioides Resulting from Species Delimitation Analysis

description: <strong>Concatenated loci alignment (.fasta), Maximum-Likelihood, Maximum-Parsimony and Bayesian reconstruction of <em>Cladosporium cladosporioides</em> phylogeny. </strong> Files represent dataset of the study: "Cryptic Diversity in Cladosporium cladosporioides Resulting from Species Delimitation Analysis" ABSTRACT Establishing a stable taxonomy is particularly important for understanding fungal biodiversity, as well as the evolution of particular traits related to symbiotic interactions. <em>Cladosporium cladosporioides </em>is an extremely widespread fungus involved in associations ranging from mutualistic to pathogenic, and is the most represented <em>Cladosporium</em> species in genetic sequence databases, such as Genbank. Although the taxonomy of <em>Cladosporium</em> species is subjected to frequent revisions, which nowadays mostly rely on molecular data, few studies explored cryptic diversity of this genus using the recently developed species delimitation methods. Considering a previous study which reported several hypothetical species within <em>C. cladosporioides</em>, here we try to fill the gap of knowledge about phylogenetic relationships for this species and tested four different methods of species delimitation using the combined DNA barcodes ITS, <em>translation elongation factor 1</em> and <em>actin</em>. The analyses involved 105 isolates revealing that currently available sequences of <em>C. cladosporioides</em> in GenBank actually represent more than one species. Moreover, we reported the erroneous taxonomical assignment of several isolates that should be ascribed to <em>C. anthropophilum</em>. Our results revealed a certain degree of discordance among species delimitation methods, which can be efficiently treated using conservative approaches, in order to minimize the risk of considering false positives.
DOI: 10.5281/zenodo.5152221
title: Cryptic Diversity in Cladosporium cladosporioides Resulting from Species Delimitation Analysis

description: <strong>Concatenated loci alignment (.fasta), Maximum-Likelihood, Maximum-Parsimony and Bayesian reconstruction of <em>Cladosporium cladosporioides</em> phylogeny. </strong> Files represent dataset of the study: "Cryptic Diversity in Cladosporium cladosporioides Resulting from Species Delimitation Analysis" ABSTRACT Establishing a stable taxonomy is particularly important for understanding fungal biodiversity, as well as the evolution of particular traits related to symbiotic interactions. <em>Cladosporium cladosporioides </em>is an extremely widespread fungus involved in associations ranging from mutualistic to pathogenic, and is the most represented <em>Cladosporium</em> species in genetic sequence databases, such as Genbank. Although the taxonomy of <em>Cladosporium</em> species is subjected to frequent revisions, which nowadays mostly rely on molecular data, few studies explored cryptic diversity of this genus using the recently developed species delimitation methods. Considering a previous study which reported several hypothetical species within <em>C. cladosporioides</em>, here we try to fill the gap of knowledge about phylogenetic relationships for this species and tested four different methods of species delimitation using the combined DNA barcodes ITS, <em>translation elongation factor 1</em> and <em>actin</em>. The analyses involved 105 isolates revealing that currently available sequences of <em>C. cladosporioides</em> in GenBank actually represent more than one species. Moreover, we reported the erroneous taxonomical assignment of several isolates that should be ascribed to <em>C. anthropophilum</em>. Our results revealed a certain degree of discordance among species delimitation methods, which can be efficiently treated using conservative approaches, in order to minimize the risk of considering false positives.
DOI: 10.5281/zenodo.5151734
title: Data_raymond_fuchs-stone2021

description: This tarred, gzipped file contains parameter files (t*), profile initialization files (init*), and horizontally averaged output files (prof*) for the goconv WTG simulations for Raymond and Fuchs-Stone (2021). The README file documents the contents of this directory. Full numerical output may be reproduced using the included "t" and "init" files as well as version 070 or 071 of goconv (doi:10.5281/zenodo.5150754). The script goprof.sh, included with the goconv source code, reduces the raw output files to "prof" files. The Candis package (doi:10.5281/zenodo.5150519) must be installed for this to work. The "prof" files are created in Candis format but are converted to NetCDF format here for convenience. The "init" files are derived from OTREC 3DVar analyses as described in Raymond and Fuchs-Stone (2021).
DOI: 10.5281/zenodo.5151733
title: Data_raymond_fuchs-stone2021

description: This tarred, gzipped file contains parameter files (t*), profile initialization files (init*), and horizontally averaged output files (prof*) for the goconv WTG simulations for Raymond and Fuchs-Stone (2021). The README file documents the contents of this directory. Full numerical output may be reproduced using the included "t" and "init" files as well as version 070 or 071 of goconv (doi:10.5281/zenodo.5150754). The script goprof.sh, included with the goconv source code, reduces the raw output files to "prof" files. The Candis package (doi:10.5281/zenodo.5150519) must be installed for this to work. The "prof" files are created in Candis format but are converted to NetCDF format here for convenience. The "init" files are derived from OTREC 3DVar analyses as described in Raymond and Fuchs-Stone (2021).
DOI: 10.6084/m9.figshare.3761562.v1938
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.15094140.v1
title: LiteraturaCientifica-IA-Austims

description: Literatura Científica
DOI: 10.6084/m9.figshare.15094140
title: LiteraturaCientifica-IA-Austims

description: Literatura Científica
DOI: 10.5517/ccdc.csd.cc27l1rn
title: CCDC 2072931: Experimental Crystal Structure Determination

description: Related Article: Shaonan Liu|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27l1sp
title: CCDC 2072932: Experimental Crystal Structure Determination

description: Related Article: Shaonan Liu|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27l1ws
title: CCDC 2072935: Experimental Crystal Structure Determination

description: Related Article: Shaonan Liu|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27l1xt
title: CCDC 2072936: Experimental Crystal Structure Determination

description: Related Article: Shaonan Liu|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27l1yv
title: CCDC 2072937: Experimental Crystal Structure Determination

description: Related Article: Shaonan Liu|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27l1zw
title: CCDC 2072938: Experimental Crystal Structure Determination

description: Related Article: Shaonan Liu|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27l20y
title: CCDC 2072939: Experimental Crystal Structure Determination

description: Related Article: Shaonan Liu|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27l534
title: CCDC 2073035: Experimental Crystal Structure Determination

description: Related Article: D. Shobana, S. Sudha, D. Ramarajan|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27l3gf
title: CCDC 2072984: Experimental Crystal Structure Determination

description: Related Article: Yao Liu|2021|CSD Communication|||