cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.99h7n2
title: Occurrence Download

description: A dataset containing 4975 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((93.02493 7.240533, 93.63684 7.240533, 93.63684 8.568318, 93.02493 8.568318, 93.02493 7.240533))"
 ]
}

 The dataset includes 4975 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005245-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jquc42
title: Occurrence Download

description: A dataset containing 6555 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pongo pygmaeus (Linnaeus, 1760)"
 ]
}

 The dataset includes 6555 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005248-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7f5az5
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Agonoleptus thoracicus (Casey, 1914)",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 69 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005247-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ty9fj
title: Occurrence Download

description: A dataset containing 32164 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((93.63684 5.553849, 95.77319 5.553849, 95.77319 7.434779, 93.63684 7.434779, 93.63684 5.553849))"
 ]
}

 The dataset includes 32164 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005249-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uffmer
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Amara exarata Dejean, 1828",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 75 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005253-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edakvw
title: Occurrence Download

description: A dataset containing 72271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Leucopogon R.Br."
 ]
}

 The dataset includes 72271 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005240-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46pzqb
title: Occurrence Download

description: A dataset containing 15881 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelophylax perezi (López-Seoane, 1885)",
 "Year 1980-2010"
 ]
}

 The dataset includes 15881 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005254-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.symk6j
title: Occurrence Download

description: A dataset containing 12473 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Records of protected animal, plant and fungi species in Ukraine"
 ]
}

 The dataset includes 12473 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005255-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fu5yy
title: Occurrence Download

description: A dataset containing 1749378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Passer domesticus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 1749378 records from 1004 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005241-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xzp94
title: Occurrence Download

description: A dataset containing 1412 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Cetacean Stranding Data in Hokkaido"
 ]
}

 The dataset includes 1412 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005256-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ju6vw
title: Occurrence Download

description: A dataset containing 334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Leucosceptrum Sm."
 ]
}

 The dataset includes 334 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005261-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ww8-sfq-y7b
title: Planularia gemmata (Brady, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xrx-dk7-8al
title: Elphidium craticulatum (Fichtel & Moll, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.htata7
title: Occurrence Download

description: A dataset containing 2159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is da86174a-a605-43a4-a5e8-53d484152cd3",
 "TaxonKey is Soleirolia soleirolii"
 ]
}

 The dataset includes 2159 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023757-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/cs3-mgr-gdb
title: Ammoglobigerina globigeriniformis (Parker & Jones, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f0v-a4j-a8e
title: Magnesoina antillarum (Cushman, 1936)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ck9-hy6-y8j
title: Textularia conica d'Orbigny, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lej-j1g-0gq
title: Saida Hornibrook, 1952

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g04-lf7-5sy
title: Rupertianella rupertiana (Brady, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6hn-yxs-jcc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s6x-dnq-fv1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c2g-v8k-sy5
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pgc-tce-7tx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3b2-p7t-490
title: Globigerinoides conglobatus (Brady, 1879)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qsd-e9a-pcf
title: Adelosina phoenicia Martinotti, 1921

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3xc-6wj-clv
title: Amphistegina lessonii d'Orbigny in Deshayes, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/759-8c5-qyw
title: Triloculina tricarinata d'Orbigny in Deshayes, 1832

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tfd-xcr-f6h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0vd-bhz-3qw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k6g-5m5-e65
title: †Physocythere Kaye, 1963

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4we-fq8-q97
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j8f-vyk-mqg
title: Elphidium williamsoni Haynes, 1973

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/02p-r0h-y32
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9p5-f65-h3t
title: †Apatocythere ellipsoidea Triebel, 1940

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qvc-1er-cy4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/be3-fsp-0dz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nv6-1rb-7s2
title: Ammoglobigerina globigeriniformis (Parker & Jones, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rxm-kdz-rx6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m81-qjm-ykm
title: Reophax spiculifer Brady, 1879

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3wh-anm-qs7
title: †Eggerellina mariae Ten Dam, 1950

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vm8-jva-5w5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xw9-mr7-h9n
title: Chrysalidinella dimorpha (Brady, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ze6-8fy-ef0
title: Hoplocrioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n5w-ge9-k3k
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6sk-kc4-qq1
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rax-dec-nys
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7dd-3rz-0pp
title: Discammina compressa (Goës, 1882)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sm1-3b1-9ec
title: †Pilocrinus Jaekel, 1907

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hkx-azs-1h4
title: Elphidium williamsoni Haynes, 1973

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vyr-b7h-ked
title: Chilostomella oolina Schwager, 1878

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ln6-ztd-nps
title: †Psilocitharella striolata (Reuss, 1863)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xan-y69-b0w
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6b4-s5b-7sv
title: Phyllopachyceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jfn-r78-wmz
title: Hansenisca soldanii (d'Orbigny, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wm1-5t6-yqj
title: Reussella weberi Hofker, 1951

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.57967/hf/5230
title: EYE-TEST-4
DOI: 10.14288/1.0447277
title: Navigating challenges in applied animal behaviour and welfare research: A focus group study

description: Academics in applied animal behaviour and welfare science may face challenges while working within the constraints imposed by institutional and regulatory frameworks. However, to our knowledge, no studies have attempted to describe the nature of these difficulties and whether there are regional differences. This database contains the supplementary materials of a focus group study with 47 delegates attending the 56th Congress of the International Society of Applied Ethology (ISAE) held in Tallinn, Estonia, in August 2023. Participants represented 33 countries covering five continents. Using a semi-structured discussion guide, participants were encouraged to discuss their challenges, proposed solutions to the identified challenges, and the role international societies could play in overcoming some of these challenges. All focus group discussions were audio-recorded, transcribed and subjected to thematic analyses. Three main themes were identified: (1) the discipline of animal behaviour and welfare, (2) conducting and sharing research, and (3) researcher welfare and networking. Participants described numerous barriers hindering their research process, originating from within their academic institutions, local governments, and journal guidelines but also arising from prejudice and other personal challenges. Many of the challenges identified were shared among all participants, regardless of region, but specific socio-demographic groups more strongly voiced some issues. While solutions were difficult to identify, many participants communicated their willingness to collaborate as a first step to striving for solutions to the identified challenges.
DOI: 10.14288/1.0447359
title: Macroalgal biodiversity in 1983 and 1984 around Metro Vancouver, British Columbia

description: This survey was conducted in 1983 and 1984 at several location in and round Metro Vancouver. The survey characterized macro and micro algae at the sites and includes dive surveys.
DOI: 10.14288/1.0447360
title: Data for "Tidal Modulation of the Fraser River Plume"

description: Analytical data in support of the manuscript "Tidal Modulation of the Fraser River Plume", which is submitted to the Journal of Geophysical Research: Oceans. One could use the data to generate any figure in the manuscript. (2024-11-22)
DOI: 10.14288/1.0447358
title: Glycogen synthase kinase 3 inhibition controls Mycobacterium tuberculosis Infection

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Compounds targeting host control of infectious diseases provide an attractive alternative to antimicrobials. A phenotypic screen of a kinase library identified compounds targeting glycogen synthase kinase 3 as potent inhibitors of &lt;em&gt;Mycobacterium tuberculosis&lt;/em&gt; (Mtb) intracellular growth in the human THP-1 cell line and primary human monocytes-derived macrophages (hMDM). CRISPR knockouts and siRNA silencing showed that GSK3 isoforms are needed for the growth of Mtb and that a selected compound, P-4423632 targets GSK3β. GSK3 inhibition was associated with macrophage apoptosis governed by the Mtb secreted protein tyrosine phosphatase A (PtpA). Phospho-proteome analysis of macrophages response to infection revealed a wide array of host signaling and apoptosis pathways controlled by GSK3 and targeted by P-4423632. P-4423632 was additionally found to be active against other intracellular pathogens. Our findings strengthen the notion that targeting host signaling to promote the infected cell's innate antimicrobial capacity is a feasible and attractive host-directed therapy approach.&lt;/p&gt;
DOI: 10.14288/1.0447387
title: Efficacy of pain management for cattle castration: a systematic review and meta-analysis.

description: While much research has assessed methods of pain control for the castration of male cattle, a lack of consensus remains on best practice. We conducted a systematic review and meta-analysis of studies, published before July 2024, that focused on castration, included an untreated control (i.e. castrated without pain mitigation) and included at least one treatment (i.e. castrated with a local anesthetic alone, or in combination with a non-steroidal anti-inflammatory drug). All three commonly used castration methods of were included: surgical, elastration, and crushing. Studies had to report at least one of the following outcomes: cortisol, change in body weight, foot stomping, wound licking, a subjective assessment of pain using a visual analogue scale, or stride length. Our search identified 383 publications, 17 of which were eligible for inclusion. Most publications focused on surgical castration (n = 14), and the most frequently outcome reported was blood cortisol (n = 13). None of the included studies were assessed as having a low risk of bias, mostly due to a lack of reporting blinding procedures and reasons for missing data. We used a three-level random effect model fitted at 1, 3, 4, 6, 12 and 24 h after castration to meta-analyze the effect of surgical castration on blood cortisol. Multimodal analgesia reduced blood cortisol concentrations in the first hour following surgical castration in comparison to the control group (-40.8 nmol/L; 95% CI: -51.4, -30.1); this effect was diminished but still evident at 3 and 4 h after castration. Too few data were available to meaningfully assess other outcomes and methods. The variability in the choice of methods and outcomes between studies, as well as the risks of bias, hinders capacity to provide science-based recommendations for best practice.
DOI: 10.14288/1.0447361
title: Terminology in ecology and evolutionary biology disproportionately harms marginalized groups

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;The discipline of ecology and evolutionary biology (EEB) has long grappled with issues of inclusivity and representation, particularly for individuals with systematically excluded and marginalized backgrounds or identities. For example, significant representation disparities still persist that disproportionately affect women and gender minorities; Black, Indigenous, and People of Color; individuals with disabilities; and people who are LGBTQIA+. Recent calls for action have urged the EEB community to directly address issues of representation, inclusion, justice, and equity. One aspect of this endeavor is to examine the use of EEB’s discipline-specific language and terminology, which may have the potential to perpetuate unjust systems and isolate marginalized groups. Through a mixed-methods survey, we examined how members of the EEB community perceive discipline-specific terminology, including how they believe it can be harmful and which terms they identified as problematic. Of the 795 survey respondents, we found that almost half agreed that there are harmful terms in EEB, and that many individuals from marginalized groups responded that they have been harmed by such terminology. Most of the terms identified as harmful relate to race, ethnicity, and immigration; sex and gender; geopolitical hierarchies; and historical violence. Our findings suggest there is an urgent need for EEB to confront and critically reassess its discipline-specific terminology. By identifying harmful terms and their impacts, our study represents a crucial first step toward dismantling deeply rooted exclusionary structures in EEB. We encourage individuals, communities, and institutions to use these findings to reevaluate language used in disciplinary research, teaching and mentoring, manuscripts, and professional societies. Rectifying current harms in EEB will help promote a more just and inclusive discipline.&lt;/p&gt;
DOI: 10.14288/1.0447499
title: Data & Scripts: Maximizing biochar climate change mitigation impact through optimized logistic.

description: This folder contains all the data, shapefiles, and model script that were required to produce the results and figures presented in the manuscript titled: Maximizing biochar climate change mitigation impact through optimized logistic.
DOI: 10.14288/1.0447458
title: Phylogeny of euophryine jumping spiders from ultra-conserved elements, with evidence on the intersexual coevolution of genitalia (Araneae: Salticidae: Euophryini)

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Knowledge of phylogeny is required to understand the evolution of highly diverse groups such as the euophryine jumping spiders, a lineage showing high species and morphological diversity. In this study, we applied a phylogenomic approach using ultra-conserved elements (UCE) obtained from 145 taxa to infer the phylogeny of euophryine jumping spiders. The results provide a well-supported phylogenetic framework for Euophryini, especially for the deeper relationships, in which the monophyly of Euophryini, as well as most clades corresponding to a genus or a group of closely related genera are strongly supported. Additionally, the evolutionary patterns of male embolus length and female copulatory duct length of 117 euophryine species were investigated through ancestral character state reconstruction and phylogenetically-independent contrasts analyses using the UCE phylogenetic framework. The results suggest strongly that the evolution of the lengths of male embolus and female copulatory duct in Euophryini is positively correlated. The common ancestor of Euophryini likely had relatively short embolus and copulatory duct, followed by repeated lengthening or shortening of both structures in different lineages. Possible mechanisms that may have caused this intersexual coevolution pattern in Euophryini are discussed. This study advances our understandings of the phylogeny, systematics and genitalic evolution of euophryines, providing a solid foundation for future studies on the diversification and evolution of this jumping spider group.&lt;/p&gt;