cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4746287
title: The effect of stream shading on the inflow characteristics in a downstream reservoir

description: The dataset is provided in daily temporal resolution, from 01-Mar-2018 to 28-Feb-2019. It includes observed meteorological conditions within the catchment of gauge Campo Largo, observed and simulated discharge and water temperature of Passaúna River at gauge Campo Largo, observed water temperature at surface and bottom of Passaúna Reservoir at the reservoir temperature gauge, and density current classifications according to observations and simulated scenarios: Air Temperature (°C) Incoming short wave radiation / R<sub>glob</sub> (W m<sup>-2</sup>) Precipitation (mm day<sup>-1</sup>) Observed discharge (m<sup>3</sup> s<sup>-1</sup>) Simulated discharge (m<sup>3</sup> s<sup>-1</sup>) River WT observed (°C) River WT simulation scenario present state of shading (°C) River WT simulation scenario full shading (°C) River WT simulation scenario no shading (°C) Reservoir WT surface observed (°C) Reservoir WT bottom observed (°C) Density current classification - observed Density current classification - simulation scenario present state of shading Density current classification - simulation scenario full shading Density current classification - simulation scenario no shading
DOI: 10.5258/soton/d1667
title: Dataset for: In-flight sensing of pollen grains via laser scattering and deep learning

description: This dataset supports the publication: 'In-flight sensing of pollen grains via laser scattering and deep learning' in 'IOP Engineering Research Express'.
DOI: 10.5258/soton/d1676
title: Data for 'Advantages of a curved image plate for rapid laboratory-based X-ray total scattering measurements'

description: This data set supports the publication: Advantages of a curved image plate for rapid laboratory-based x-ray total scattering measurements: Application to pair distribution function analysis Review of Scientific Instruments 92, 043107 (2021); https://doi.org/10.1063/5.0040694
DOI: 10.5281/zenodo.4738948
title: mGEMS Escherichia coli in vitro experiment hybrid assemblies

description: This dataset contains the <em>E. coli</em> reference sequences for the strains that were used in the <em>in vitro</em> mixed experiments in the mGEMS publication. The sequences were hybrid assembled from ONT long-read and Illumina short-read data.
DOI: 10.5281/zenodo.4738947
title: mGEMS Escherichia coli in vitro experiment hybrid assemblies

description: This dataset contains the <em>E. coli</em> reference sequences for the strains that were used in the <em>in vitro</em> mixed experiments in the mGEMS publication. The sequences were hybrid assembled from ONT long-read and Illumina short-read data.
DOI: 10.15129/33f7ebd2-0ea1-4244-9233-070fa35c4746
title: Data for: "Investigating the Influence of Ads on User Search Performance, Behaviour, and Experience during Information Seeking"

description: This dataset contains data for 37 participants completing search tasks in two conditions: 1- No adverts were present; 2- Adverts were present (This was averaged from 3 different advert conditions, as explained in the paper). Every column contains a dependent variable, firstly listing search task performance metrics, then search behaviour, and finally user experience. The paper describes each column in detail.
DOI: 10.5281/zenodo.4748772
title: Agapornis roseicollis SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4748771
title: Agapornis roseicollis SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.14572674
title: Tissue_expression_pattern_of_TM-1.fpkm.txt.gz

description: Tissue expression pattern of TM-1
DOI: 10.6084/m9.figshare.14572674.v1
title: Tissue_expression_pattern_of_TM-1.fpkm.txt.gz

description: Tissue expression pattern of TM-1
DOI: 10.13140/rg.2.2.30174.15681
title: TDICPS-2: MS-Excel Module to Transform an Integrated Variable into Cumulative Partial Sums for Negative and Positive Components
DOI: 10.5281/zenodo.4748678
title: TGRAINS: CSA Twitter database - Periphery Database

description: The first release of the TGRAIN Periphery Twitter database.
description: Funded through the Global Food Security's 'Resilience of the UK Food System Programme' with support from Biotechnology and Biological Sciences Research Council (BBSRC), Economic and Social Research Council (ESRC), Natural Environment Research Council (NERC) and the Scottish government.
DOI: 10.5281/zenodo.4748677
title: TGRAINS: CSA Twitter database - Periphery Database

description: The first release of the TGRAIN Periphery Twitter database.
description: Funded through the Global Food Security's 'Resilience of the UK Food System Programme' with support from Biotechnology and Biological Sciences Research Council (BBSRC), Economic and Social Research Council (ESRC), Natural Environment Research Council (NERC) and the Scottish government.
DOI: 10.5281/zenodo.4748789
title: Umimayanthus nakama SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4748788
title: Umimayanthus nakama SPAdes preassembly

description: .
DOI: 10.18751/climate/griddata/chhc/1.0
title: CHHC: Swiss Hail Climatology

description: The data contain the monthly and yearly number of hail days, the monthly and yearly maximum hailstone sizes, the long-term average number of hail days per year and month of the summer half-year (April to September), per square kilometer, for Switzerland. Due to the infrequent occurrence of hail, averaging of hailstone sizes over many years is not meaningful. The long term average numbers of days with hailstone sizes of at least 2 cm and 4 cm are provided as climatology.

Hail cannot be measured on the ground over a wide area. The size is therefore derived from radar measurements. A hail day is defined as a day on which a high probability of hail on the ground was derived from the radar parameter Probability Of Hail POH. The number of hail days of at least 2 cm and 4 cm, respectively is based on radar parameter Maximum Expected Severe Hailstone Sizes (MESHS). The 24 hours between 06 UTC and 06 UTC of the following day are considered.

The return period data contain the return values of the radar-derived maximum expected hailstone sizes over a square kilometer (MESHS) and the application-focused largest expected hail stone size over a reference area of 100 square meters (LEHA), respectively, as a function of the return period T. They describe the hailstone size that is exceeded with a probability of 1/T per year under today's climate conditions, at a fixed location. The return values were determined using a stochastic resampling approach based on observed radar hail footprint data of the period 2002-2020.

Hailstone sizes MESHS are given in classes from 2 cm to greater than 6 cm in 0.5 cm increments, with the lower end being inclusive and the upper end exclusive: the grid value 2 represents values from 2 cm (incl.) to 2.5 cm (excl.).

Hailstone sizes LEHA are given in classes from 2 cm to greater than 5 cm in 1 cm increments, with the lower end being inclusive and the upper end exclusive: the grid value 2 represents values from 2 cm (incl.) to 3 cm (excl.).

Created by MeteoSwiss within the scope of the project Hail Climate Switzerland.
DOI: 10.6084/m9.figshare.14572665
title: Supplementary Material for: Platelet Transfusion and Outcomes of Preterm Infants: A Cross-Sectional Study

description: <b><i>Background:</i></b> Prophylactic platelet transfusion has been adopted as a ubiquitous practice in management of thrombocytopenia in preterm infants to reduce the risk of bleeding. <b><i>Objectives:</i></b> The objectives of this study were to report the prevalence of platelet transfusion among preterm infants with thrombocytopenia and to assess the association of platelet transfusion with mortality and morbidity in this population. <b><i>Methods:</i></b> A cross-sectional study that utilized National Inpatient Sample for the years 2000–2017 was conducted. All preterm infants delivered nationally with birth weight (BW) &lt;1,500 g or gestational age &lt;32 weeks were included. Analyses were repeated after stratifying the population into 2 BW subcategories &lt;1,000 g and 1,000–1,499 g. Logistic regression analysis was performed to adjust for confounding variables. <b><i>Results:</i></b> The study included 1,780,299 infants; of them, 22,609 (1.27%) were diagnosed with thrombocytopenia and 5,134 (22.7%) received platelet transfusion. Platelet transfusion was associated with significant increase in mortality (24.8 vs. 13.8%), retinopathy of prematurity (22.3 vs. 19.2%), severe intraventricular hemorrhage (18.3 vs. 10.1%), median length of hospital stays (51 vs. 47 days), and cost of hospitalization (USD 298,204 vs. USD 219,760). Increased mortality was noted in &lt;1,000-g infants (aOR = 1.96, CI: 1.76–2.18, <i>p</i> &lt; 0.001) and 1,000–1,499-g infants (aOR = 2.02, CI: 1.62–2.53, <i>p</i> &lt; 0.001). Platelet transfusion increased over the years in infants with BW &lt;1,000 g (<i>p</i> = 0.001) and in infants with BW 1,000–1,499 g (<i>p</i> &lt; 0.001). <b><i>Conclusions:</i></b> Platelet transfusion is associated with increased mortality and comorbidities in premature infants. There is a trend for increased utilization of platelet transfusions over the study period.
DOI: 10.6084/m9.figshare.14572656
title: Supplementary Material for: A Comparison of Focal and Opportunistic Sampling Methods when Studying Chimpanzee Facial and Gestural Communication

description: Researchers frequently use focal individual sampling to study primate communication. Recent studies of primate gestures have shown that opportunistic sampling offers benefits not found in focal individual sampling, such as the collection of larger sample sizes. What is not known is whether the opportunistic method is biased towards certain signal types or signalers. Our goal was to assess the validity of the opportunistic method by comparing focal individual sampling to opportunistic sampling of facial and gestural communication in a group of captive chimpanzees (<i>Pan troglodytes</i>). We compared: (1) the number of observed facial and gestural signals per signal type and (2) the number of observed facial and gestural signals produced by each signaler. Both methods identified facial signals, gesture signals, and gesture signalers at similar relative rates, but the opportunistic sampling method yielded a more even distribution of signalers and signal types than the focal individual sampling method. In addition, the opportunistic sampling method resulted in larger sample sizes for both facial and gestural communication. However, the opportunistic method did not allow us to calculate the signals per time for each individual, which is easily done with the focal individual method. These results suggest that the opportunistic sampling method is (1) comparable to the focal individual sampling method in multiple important measures, (2) associated with additional sampling benefits, and (3) limited in measuring some variables. Thus, we recommend that future studies use a mixed-methods approach, as focal individual and opportunistic sampling have distinct strengths that complement each other’s limitations.
DOI: 10.6084/m9.figshare.14572701
title: Supplementary Material for: CHA<sub>2</sub>DS<sub>2</sub>-VASc Score as a Predictor of Cardiovascular and All-Cause Mortality in Chronic Kidney Disease Patients

description: <b><i>Introduction:</i></b> Chronic kidney disease (CKD) is a risk factor for cardiovascular and all-cause mortality. Recognition of high-risk patients is important and could lead to a different approach and better treatment. The CHA<sub>2</sub>DS<sub>2</sub>-VASc score was originally used to predict cerebral infarction in patients with atrial fibrillation (AF), but it is also a useful predictor of outcome in other cardiovascular conditions, independent of AF. Therefore, the aim of our research was to assess the role of CHA<sub>2</sub>DS<sub>2</sub>-VASc score in predicting cardiovascular and all-cause mortality in CKD patients. <b><i>Methods:</i></b> Stable nondialysis CKD patients were included. At the time of inclusion, medical history data and standard blood results were collected and CHA<sub>2</sub>DS<sub>2</sub>-VASc score was calculated. Patients were followed till the same end date, until kidney transplantation or until their death. <b><i>Results:</i></b> Eighty-seven CKD patients were included (60.3 ± 12.8 years, 66% male). Mean follow-up time was 1,696.5 ± 564.6 days. During the follow-up, 21 patients died and 11 because of cardiovascular reasons. Univariate Cox regression analysis showed that CHA<sub>2</sub>DS<sub>2</sub>-VASc score is a significant predictor of cardiovascular and all-cause mortality. In multivariate Cox regression analysis, in which CHA<sub>2</sub>DS<sub>2</sub>-VASc score, serum creatinine, urinary albumin/creatinine, hemoglobin, high-sensitivity C-reactive protein, and intact parathyroid hormone were included, CHA<sub>2</sub>DS<sub>2</sub>-VASc score was an independent predictor of cardiovascular (HR: 2.04, CI: 1.20–3.45, <i>p</i> = 0.008) and all-cause mortality (HR: 2.06, CI: 1.43–2.97, <i>p</i> = 0.001). The same was true after adding total cholesterol, triglycerides, and smoking status to both the analyses. <b><i>Conclusion:</i></b> The CHA<sub>2</sub>DS<sub>2</sub>-VASc score is a simple, practical, and quick way to identify the risk for cardiovascular and all-cause mortality in CKD patients.
DOI: 10.15129/1ac476ea-4266-4441-99fb-cd6a5f593117
title: Performance data of stereo vision reconstruction through a slit lamp

description: Data underpinning the publication: Coghill I, Giardini ME. Stereo Vision based Optic Nerve Head 3D Reconstruction using a Slit Lamp fitted with Cameras: Performance Trial with an Eye Phantom. IEEE Proc I2MTC (in press), to be referenced for ttribution. The dataset is licensed under a Creative Commons CC-BY 4.0 license. At the time of writing, this article is in press. The latest status and a preprint can be downloaded at https://pureportal.strath.ac.uk/en/publications/stereo-vision-based-optic-nerve-head-3d-reconstruction-using-a-sl Data will be released on opening day of IEEE I2MTC 2021 conference, May 17th 2021
DOI: 10.6084/m9.figshare.14572671
title: raw Data for NC.xlsx

description: it is the raw data for submitted manuscript entitled:"Doublesex regulates pheromone-mediated sexual communication in <i>Nasonia vitripennis"</i>
DOI: 10.5281/zenodo.4748818
title: Ulmus americana SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4748817
title: Ulmus americana SPAdes preassembly

description: .
DOI: 10.5517/ccdc.csd.cc1pzwq8
title: CCDC 1578821: Experimental Crystal Structure Determination

description: Related Article: Ruixue Wu, Caifeng Bi, Xia Zhang, Ziao Zong, Chuanbin Fan, Xiaoyin Zhang, Nana Li, Yuhua Fan|2020|Appl.Organomet.Chem.|34|e5264|doi:10.1002/aoc.5264
DOI: 10.5517/ccdc.csd.cc230b7q
title: CCDC 1936732: Experimental Crystal Structure Determination

description: Related Article: Hai-Ling Wang, Zi-Yuan Liu, Zhong-Hong Zhu, Jin-Mei Peng, Xiong-Feng Ma, Juan Bai, Hua-Hong Zou, Kai-Qiang Mo, Fu-Pei Liang|2020|CrystEngComm|22|915|doi:10.1039/C9CE01730E
DOI: 10.5286/isis.e.rb2000218-2
title: ISIS@MACH - Single-crystal neutron diffraction of the MAPbBr3 perovskite

description: Organometal halide perovskites of the family methylammonium (MA) lead halides, MAPbX3, are promising materials for photovoltaic applications, light-emitting diodes and photodetectors. While their macroscopic properties have been largely investigated, their structure and dynamics at the atomic scale are still a matter of study. In particular, MAPbBr3, less studied than its more common variant with I replacing Br, shows several crystal structures in the temperature range between cryogenic and room temperatures. While the structure and vibrational dynamics will be studied using light sources and X-ray diffraction, additional and unique information, especially on the role of hydrogen, can be gathered using neutron techniques. Thus we propose a study using a single-crystal neutron diffraction experiment to be performed using the SXD beamline at the ISIS through the Neutron Gate of ISIS@MACH.
DOI: 10.5281/zenodo.4359328
title: ZoeGold/crossed_arm_walk_chimp: Data for Crossed arm walk anecdote

description: Data and code necessary to replicate analyses for Goldsborough et al. "Zoo-housed female chimpanzee adopts local female-specific tradition upon immigrating into a new group"
DOI: 10.5281/zenodo.4359327
title: ZoeGold/crossed_arm_walk_chimp: Data for Crossed arm walk anecdote

description: Data and code necessary to replicate analyses for Goldsborough et al. "Zoo-housed female chimpanzee adopts local female-specific tradition upon immigrating into a new group"
DOI: 10.6084/m9.figshare.14541918.v1
title: Translocation of Common Almond Agrochemicals into Honey Bee Nurses, Royal Jelly, and Effects to Developing Queens

description: This dataset contains data from a queen-rearing experiment, on the translocation of agrochemicals (pesticides and a spray adjuvant) from pollen into the bodies of nurse honey bees, their royal jelly secretions, and their effects to the survival of developing queens, to emergence and to 7 days post-emergence. Annotated R scripts used for analysis are included.<br>A link to the associated paper will be made available upon publication.<br>Abstract:Honey bee (<i>Apis mellifera</i> L.) colonies that pollinate California’s almond orchards are often exposed to mixtures of agrochemicals. Although agrochemicals applied during almond bloom are typically considered bee-safe when applied alone, their combined effects to honey bees are largely untested. In recent years, beekeepers providing pollination services to California’s almond orchards have reported reductions in queen quality and brood health during and immediately after bloom, raising concerns that pesticide exposure may be involved. Previous research identified a synergistic effect between the insecticide chlorantraniliprole (Altacor) and the fungicide propiconazole (Tilt) to lab-reared worker brood. To test the individual and combined effects of these pesticides on the survival and emergence of developing queens, we fed worker honey bees in closed queen rearing boxes with pollen artificially contaminated with their formulated products as well as the organosilicone spray adjuvant DyneAmic. The translocation of pesticides from pesticide-treated pollen into the royal jelly secretions of nurse bees and developing queens was also measured. Despite consistently low levels of all pesticide active ingredients in royal jelly, the survival of queens from pupation to 7 days post-emergence were reduced in queens reared by worker bees fed pollen containing a combination of Altacor, Tilt, and DyneAmic, as well as the toxic standard, Dimilin 2L, applied in isolation. We advise caution when applying agrochemical mixtures when honey bees are actively pollinating crops.<br>
DOI: 10.15468/vaf5j6
title: First record of Paegniodes Eaton, 1881 (Ephemeroptera, Heptageniidae) from Thailand with description of a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Boonsoong, Boonsatien, Auychinda, Chonlakran, Sartori, Michel, Khanyom, Nuttakun (2021): First record of Paegniodes Eaton, 1881 (Ephemeroptera, Heptageniidae) from Thailand with description of a new species. ZooKeys 1036: 153-170, DOI: http://dx.doi.org/10.3897/zookeys.1036.64880, URL: http://dx.doi.org/10.3897/zookeys.1036.64880
DOI: 10.15468/262qx6
title: First fossil record of the mayfly family Vietnamellidae (Insecta, Ephemeroptera) from Burmese Amber confirms its Oriental origin and gives new insights into its evolution

description: This dataset contains the digitized treatments in Plazi based on the original journal article Godunko, Roman J., Martynov, Alexander V., Staniczek, Arnold H. (2021): First fossil record of the mayfly family Vietnamellidae (Insecta, Ephemeroptera) from Burmese Amber confirms its Oriental origin and gives new insights into its evolution. ZooKeys 1036: 99-120, DOI: http://dx.doi.org/10.3897/zookeys.1036.66435, URL: http://dx.doi.org/10.3897/zookeys.1036.66435
DOI: 10.15468/g4vuzd
title: Species delimitation of Margattea cockroaches from China, with seven new species (Blattodea, Ectobiidae, Pseudophyllodromiinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article He, Jia-Jun, Jin, Du-Ting, Wang, Yi-Shu, Che, Yan-Li, Wang, Zong-Qing (2021): Species delimitation of Margattea cockroaches from China, with seven new species (Blattodea, Ectobiidae, Pseudophyllodromiinae). ZooKeys 1036: 121-151, DOI: http://dx.doi.org/10.3897/zookeys.1036.63232, URL: http://dx.doi.org/10.3897/zookeys.1036.63232
DOI: 10.15468/hezdts
title: Four new species of Colobomatus (Copepoda: Philichthyidae) parasitic in the lateral line system of marine finfishes captured off the Ryukyu Islands, Japan, with redescriptions of Colobomatus collettei Cressey, 1977 and Colobomatus pupa Izawa, 1974

description: This dataset contains the digitized treatments in Plazi based on the original journal article Madinabeitia, Ione, Tang, Danny, Nagasawa, Kazuya (2013): Four new species of Colobomatus (Copepoda: Philichthyidae) parasitic in the lateral line system of marine finfishes captured off the Ryukyu Islands, Japan, with redescriptions of Colobomatus collettei Cressey, 1977 and Colobomatus pupa Izawa, 1974. Journal of Natural History (J. Nat. Hist.) 47 (5 - 12): 563-580, DOI: 10.1080/00222933.2012.737483, URL: http://dx.doi.org/10.1080/00222933.2012.737483
DOI: 10.5281/zenodo.4745058
title: Ke'erjian petroglyph panel (Turpan, Xinjiang province, China) - 3D documentation - final products

description: Debating the rock art panel of Ke’erjian (Xinjiang province, China): An early representation of an agropastoral landscape or the world’s oldest interregional map? - FINAL PRODUCTS Humans develop a spatial understanding of the region they dwell. Anthropology and psychology teach us that illiterate groups across encode this ‘spatial cognition’ into maps. However, prehistoric examples of maps remain hotly debated, largely because of the few examples of interregional maps known to date. Consequently, the history of cartography continues to be traced back to antiquity. This paper argues that mapmaking goes back to prehistory (i.e. late Bronze to early Iron Age) and that illiterate groups already developed a complex spatial cognition. Central in this paper stands the Ke’erjian map. This map was discovered when a heavily weathered rock art panel was redocumented with 3D techniques. Located in the eastern Tian Shan and dated to the first half of the first millennium BCE, this rock art map presents itself as a prehistoric map that is based on a detailed topological understanding of the physical landscape. Two interpretations are discussed. First, the panel is explored as an idealized landscape depiction indicating an intricate knowledge of the local environment. Second, based on detailed topographic and geomorphographic comparison the panel is positioned as a plan map of the Tian Shan. Strong correlations indicate that societies along the prehistoric Silk Road developed a spatial cognition extending 1,3 million sq. kilometres.
description: This research was jointly funded by the Strategic Priority Research Program of the Chinese Academy of Sciences (Grant No. XDA20060303) and by the Chinese Academy of Sciences President's International Fellowship Initiative (PIFI) (Grant No. 20188048, 2017VCA0002, 2020VCA001). Special thanks are also for Birger Stichelbaut (UGent), Timothy Nuttens (UGent) and Cornelis Stal (UGent) for their assistance in the fieldwork and the processing. Gino Caspari (University of Sydney) and Morgan De Dapper (UGent) are thanked their advice and discussion. The feedback of Esther Jacobson-Tepfer (University of Oregon) and Nikita Konstantinov (Gorno-Altaisk State University) was greatly appreciated and enabled us to finetune the chronology of the panel and strengthen our interpretation.