cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8196575
title: Additional file 5: of Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

description: Putative small secreted proteins of P. radiata chosen according to EffectorP analysis, LOCALIZER analysis and by identifying small cysteine rich protein. Fold change of expression of the genes in spruce wood cultivations as compared with malt extract cultivations at the two week (2w) and four week (4w) time points of cultivation was analyzed previously [26]. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.8196575.v1
title: Additional file 5: of Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

description: Putative small secreted proteins of P. radiata chosen according to EffectorP analysis, LOCALIZER analysis and by identifying small cysteine rich protein. Fold change of expression of the genes in spruce wood cultivations as compared with malt extract cultivations at the two week (2w) and four week (4w) time points of cultivation was analyzed previously [26]. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.8196590
title: Additional file 7: of Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

description: ABC transporter genes identified from the P. radiata genome assembly. (XLSX 117 kb)
DOI: 10.6084/m9.figshare.8196590.v1
title: Additional file 7: of Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

description: ABC transporter genes identified from the P. radiata genome assembly. (XLSX 117 kb)
DOI: 10.6084/m9.figshare.8196593
title: Additional file 8: of Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

description: Comparisons of the numbers of ABC transporter genes between different species of Agaricomycotina. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.8196593.v1
title: Additional file 8: of Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

description: Comparisons of the numbers of ABC transporter genes between different species of Agaricomycotina. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.7672337
title: Additional file 1 of Inverse similarity and reliable negative samples for drug side-effect prediction

description: Supplementary codes and data. The two datasets used in this work and the python codes of the proposed method. (ZIP 11,623 kb)
DOI: 10.6084/m9.figshare.7672337.v1
title: Additional file 1 of Inverse similarity and reliable negative samples for drug side-effect prediction

description: Supplementary codes and data. The two datasets used in this work and the python codes of the proposed method. (ZIP 11,623 kb)
DOI: 10.6084/m9.figshare.7672346
title: Additional file 2 of Inverse similarity and reliable negative samples for drug side-effect prediction

description: The supplementary results for this work. This file contains lists of researched drugs and side-effects, and all prediction results. Table S1: List of 917 drugs studied in this work. Drug names, drug target proteins, substituents of drugs, ATC codes and the SMILES strings are included as well. Table S2: List of 500 side-effect terms studied in this work. Table S3: F1-scores of different similarity measurements and different similarity integration methods using KNN. Table S4: F1-scores of different classifiers using the comprehensive similarity on balanced and imbalanced training sets. Table S5: F1-scores of different classifiers using the proposed negative sample selection method and random sample selection method. (XLSX 857 kb)
DOI: 10.6084/m9.figshare.7672346.v1
title: Additional file 2 of Inverse similarity and reliable negative samples for drug side-effect prediction

description: The supplementary results for this work. This file contains lists of researched drugs and side-effects, and all prediction results. Table S1: List of 917 drugs studied in this work. Drug names, drug target proteins, substituents of drugs, ATC codes and the SMILES strings are included as well. Table S2: List of 500 side-effect terms studied in this work. Table S3: F1-scores of different similarity measurements and different similarity integration methods using KNN. Table S4: F1-scores of different classifiers using the comprehensive similarity on balanced and imbalanced training sets. Table S5: F1-scores of different classifiers using the proposed negative sample selection method and random sample selection method. (XLSX 857 kb)
DOI: 10.6084/m9.figshare.21303683.v1
title: Additional file 2 of Physiological and protein profiling analysis provides insight into the underlying molecular mechanism of potato tuber development regulated by jasmonic acid in vitro

description: Additional file 2: Table S2. The identification of credible proteins appearing simultaneously in three biological replicates.
DOI: 10.6084/m9.figshare.21303686.v1
title: Additional file 3 of Physiological and protein profiling analysis provides insight into the underlying molecular mechanism of potato tuber development regulated by jasmonic acid in vitro

description: Additional file 3: Table S3. The differential expression changes (Fold change ≥ 1.2 or ≤ 0.83, p &lt; 0.05) of DEPs in each group (0.5 μM JA / control, 5 μM JA / control, 50 μM JA / control, 5 μM JA / 0.5 μM JA, 50 μM JA / 0.5 μM JA, 50 μM JA / 5 μM JA).
DOI: 10.6084/m9.figshare.21303689
title: Additional file 4 of Physiological and protein profiling analysis provides insight into the underlying molecular mechanism of potato tuber development regulated by jasmonic acid in vitro

description: Additional file 4: Table S4. The protein name and information of JA-responsive DEPs presented in the heatmap of Fig. 4B.
DOI: 10.6084/m9.figshare.21303689.v1
title: Additional file 4 of Physiological and protein profiling analysis provides insight into the underlying molecular mechanism of potato tuber development regulated by jasmonic acid in vitro

description: Additional file 4: Table S4. The protein name and information of JA-responsive DEPs presented in the heatmap of Fig. 4B.
DOI: 10.6084/m9.figshare.21303683
title: Additional file 2 of Physiological and protein profiling analysis provides insight into the underlying molecular mechanism of potato tuber development regulated by jasmonic acid in vitro

description: Additional file 2: Table S2. The identification of credible proteins appearing simultaneously in three biological replicates.
DOI: 10.6084/m9.figshare.21303680
title: Additional file 1 of Physiological and protein profiling analysis provides insight into the underlying molecular mechanism of potato tuber development regulated by jasmonic acid in vitro

description: Additional file 1: Table S1. Proteins quantified by iTRAQ during tuber development regulated by JA in vitro.
DOI: 10.6084/m9.figshare.21303680.v1
title: Additional file 1 of Physiological and protein profiling analysis provides insight into the underlying molecular mechanism of potato tuber development regulated by jasmonic acid in vitro

description: Additional file 1: Table S1. Proteins quantified by iTRAQ during tuber development regulated by JA in vitro.
DOI: 10.6084/m9.figshare.21303686
title: Additional file 3 of Physiological and protein profiling analysis provides insight into the underlying molecular mechanism of potato tuber development regulated by jasmonic acid in vitro

description: Additional file 3: Table S3. The differential expression changes (Fold change ≥ 1.2 or ≤ 0.83, p &lt; 0.05) of DEPs in each group (0.5 μM JA / control, 5 μM JA / control, 50 μM JA / control, 5 μM JA / 0.5 μM JA, 50 μM JA / 0.5 μM JA, 50 μM JA / 5 μM JA).
DOI: 10.6084/m9.figshare.25243327
title: Supplementary Material for: Cholestatic hepatitis with concomitant nephrotic syndrome due to secondary syphilis in a young man

description: A 23-year-old male presenting with fatigue, increasing abdominal pain, and poor appetite. Initial evaluation showed abnormal liver function tests with hyperbilirubinemia. Viral hepatitis, autoimmune, and metabolic disorders were ruled out. Urinalysis revealed significant proteinuria accompanied with hypertension. Serological tests confirmed secondary syphilis with reactive RPR and TPHA. Kidney biopsy indicated membranous nephritis. The patient received penicillin G Benzathine, antihypertensive, and antiproteinuric therapy. After 3 months, proteinuria resolved, and liver enzymes normalized. Syphilis is a re-emerging sexual transmitted disease with heterogeneous clinical presentation that should be considered in the differential diagnosis of inexplicable simultaneous liver and kidney dysfunction in patients with high-risk sexual behavior. This case highlights the importance of considering syphilis in young patients with unexplained nephrotic syndrome and liver abnormalities.
DOI: 10.6084/m9.figshare.8196851
title: Additional file 4 of Efficient estimation of grouped survival models

description: Table containing the annotated top 300 SNPs, ranked by unadjusted P-value, from the CALGB 40101 GWAS results. (CSV 29 kb)
DOI: 10.6084/m9.figshare.8196851.v1
title: Additional file 4 of Efficient estimation of grouped survival models

description: Table containing the annotated top 300 SNPs, ranked by unadjusted P-value, from the CALGB 40101 GWAS results. (CSV 29 kb)
DOI: 10.6084/m9.figshare.8196854
title: Additional file 4: of BTF3 sustains cancer stem-like phenotype of prostate cancer via stabilization of BMI1

description: Table S2. xls Correlation of BTF3 expression and CSC markers. (XLS 26 kb)
DOI: 10.6084/m9.figshare.8196854.v1
title: Additional file 4: of BTF3 sustains cancer stem-like phenotype of prostate cancer via stabilization of BMI1

description: Table S2. xls Correlation of BTF3 expression and CSC markers. (XLS 26 kb)
DOI: 10.6084/m9.figshare.8196848
title: Additional file 3: of BTF3 sustains cancer stem-like phenotype of prostate cancer via stabilization of BMI1

description: Table S1. xls Primers, siRNA and antibodies used in this study. (XLS 27 kb)
DOI: 10.6084/m9.figshare.8196875
title: Additional file 1: of Identification of variants and therapeutic epitopes in HPV-33/HPV-58 E6 and E7 in Southwest China

description: Table S1. Amino acid composition and hydrophilicity of HPV-33 E6 reference and variant sequence. Table S2. Amino acid composition and hydrophilicity of HPV-33 E7 reference and variant sequence. Table S3. Amino acid composition and hydrophilicity of HPV-58 E6 reference and variant sequence. Table S4 Amino acid composition and hydrophilicity of HPV-58 E7 reference and variant sequence. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8196848.v1
title: Additional file 3: of BTF3 sustains cancer stem-like phenotype of prostate cancer via stabilization of BMI1

description: Table S1. xls Primers, siRNA and antibodies used in this study. (XLS 27 kb)
DOI: 10.6084/m9.figshare.24449806
title: Lymphangiogenic responses of lymphatic endothelial cells to steady direct-current electric fields

description: Lymphangiogenesis plays pivotal roles in diverse physiological and pathological conditions. Steady direct-current electric fields (DC EFs) induce vascular endothelial behaviors related to angiogenesis have been observed. This study investigated the effects of DC EFs on the lymphangiogenic response of lymphatic endothelial cells (LECs). We demonstrated that EFs stimulation induced directional migration, reorientation, and elongation of human LECs in culture. These lymphangiogenic responses required VEGF receptor 3 (VEGFR-3) activation and were mediated through the PI3K-Akt, Erk1/2, and p38 MAPK signaling pathways in relation to the reorganization of the actin cytoskeleton. Our results indicate that endogenous EFs may play a role in lymphangiogenesis in vivo, and VEGFR-3 signaling activation may be involved in the cellular function of LECs driven by EFs.
DOI: 10.6084/m9.figshare.24449806.v1
title: Lymphangiogenic responses of lymphatic endothelial cells to steady direct-current electric fields

description: Lymphangiogenesis plays pivotal roles in diverse physiological and pathological conditions. Steady direct-current electric fields (DC EFs) induce vascular endothelial behaviors related to angiogenesis have been observed. This study investigated the effects of DC EFs on the lymphangiogenic response of lymphatic endothelial cells (LECs). We demonstrated that EFs stimulation induced directional migration, reorientation, and elongation of human LECs in culture. These lymphangiogenic responses required VEGF receptor 3 (VEGFR-3) activation and were mediated through the PI3K-Akt, Erk1/2, and p38 MAPK signaling pathways in relation to the reorganization of the actin cytoskeleton. Our results indicate that endogenous EFs may play a role in lymphangiogenesis in vivo, and VEGFR-3 signaling activation may be involved in the cellular function of LECs driven by EFs.
DOI: 10.6084/m9.figshare.8196875.v1
title: Additional file 1: of Identification of variants and therapeutic epitopes in HPV-33/HPV-58 E6 and E7 in Southwest China

description: Table S1. Amino acid composition and hydrophilicity of HPV-33 E6 reference and variant sequence. Table S2. Amino acid composition and hydrophilicity of HPV-33 E7 reference and variant sequence. Table S3. Amino acid composition and hydrophilicity of HPV-58 E6 reference and variant sequence. Table S4 Amino acid composition and hydrophilicity of HPV-58 E7 reference and variant sequence. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8196893
title: Additional file 3: of Identification of variants and therapeutic epitopes in HPV-33/HPV-58 E6 and E7 in Southwest China

description: Table S5. The diversity of predicted binders of HPV-33 E6 for HLA-I alleles between reference and variant sequences; Table S6. The diversity of predicted binders of HPV-33 E7 for HLA-I alleles between reference and variant sequences; Table S7. Predicted epitopes binders for HLA-II alleles of HPV-33 E6; Table S8. Predicted epitopes binders for HLA-II alleles of HPV-33 E7. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.8196893.v1
title: Additional file 3: of Identification of variants and therapeutic epitopes in HPV-33/HPV-58 E6 and E7 in Southwest China

description: Table S5. The diversity of predicted binders of HPV-33 E6 for HLA-I alleles between reference and variant sequences; Table S6. The diversity of predicted binders of HPV-33 E7 for HLA-I alleles between reference and variant sequences; Table S7. Predicted epitopes binders for HLA-II alleles of HPV-33 E6; Table S8. Predicted epitopes binders for HLA-II alleles of HPV-33 E7. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.8196899
title: Additional file 4: of Identification of variants and therapeutic epitopes in HPV-33/HPV-58 E6 and E7 in Southwest China

description: Table S9. The diversity of predicted binder of HPV-58 E6 for HLA-I alleles between reference and variant sequences; Table S10. The diversity of predicted binders of HPV-58 E7 for HLA-I alleles between reference and variant sequences; Table S11. Predicted epitopes binders for HLA-II alleles of HPV-58 E6; Table S12. Predicted epitopes binders for HLA-II alleles of HPV-58 E7. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.8196899.v1
title: Additional file 4: of Identification of variants and therapeutic epitopes in HPV-33/HPV-58 E6 and E7 in Southwest China

description: Table S9. The diversity of predicted binder of HPV-58 E6 for HLA-I alleles between reference and variant sequences; Table S10. The diversity of predicted binders of HPV-58 E7 for HLA-I alleles between reference and variant sequences; Table S11. Predicted epitopes binders for HLA-II alleles of HPV-58 E6; Table S12. Predicted epitopes binders for HLA-II alleles of HPV-58 E7. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.8196905
title: Additional file 5: of Identification of variants and therapeutic epitopes in HPV-33/HPV-58 E6 and E7 in Southwest China

description: Table S13. Predicted linear B cell epitopes of HPV-33 E6; Table S14 Predicted linear B cell epitopes of HPV-33 E7. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8196905.v1
title: Additional file 5: of Identification of variants and therapeutic epitopes in HPV-33/HPV-58 E6 and E7 in Southwest China

description: Table S13. Predicted linear B cell epitopes of HPV-33 E6; Table S14 Predicted linear B cell epitopes of HPV-33 E7. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8196914
title: Additional file 6: of Identification of variants and therapeutic epitopes in HPV-33/HPV-58 E6 and E7 in Southwest China

description: Table S15. Predicted linear B cell epitopes of HPV-58 E6; Table S16. Predicted linear B cell epitopes of HPV-58 E7. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8196914.v1
title: Additional file 6: of Identification of variants and therapeutic epitopes in HPV-33/HPV-58 E6 and E7 in Southwest China

description: Table S15. Predicted linear B cell epitopes of HPV-58 E6; Table S16. Predicted linear B cell epitopes of HPV-58 E7. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8196953.v1
title: Additional file 1: of Plasma metabolomic profiling of proliferative diabetic retinopathy

description: KEGG PATHWAY Database. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8196959.v1
title: Additional file 2: of Plasma metabolomic profiling of proliferative diabetic retinopathy

description: Metabolites Database. (XLSX 13 kb)
DOI: 10.14284/570
title: Effect of Rotational Impoundment Management (RIM) on abiotic and biotic factors in an impounded mangrove (Avicennia germinans) forest

description: Collected abiotic and biotic data before and after the onset on RIM in March 2009.
description: Coastal wetlands such as mangrove forests are breeding places for nuisance causing insects. Rotational Impoundment Management (RIM) is one method used for mosquito control, which involves annual summer inundation with estuarine water for six consecutive months. In addition to managing mosquitos, RIM may change biogeochemical pathways in the managed areas. This study set out to investigate how RIM quantitatively affects the potential nitrifying and denitrifying activities. Before and after the start of RIM, soil samples were collected annually in three habitats differing in the size and abundance of black mangroves (Avicennia germinans) in a RIM- and in an adjacent control impoundment.
DOI: 10.23649/jae.2024.42.11.1
title: Влияние времени выдерживания сфер в растворе лактата кальция на их упругость

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.5.1
title: Схема исследований

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.8.1
title: Местонахождение и описание объектов исследования

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.9.1
title: Яйценоскость гусынь и результаты инкубации

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.10.1
title: Параметры статистической оценки морфометрических параметров

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.11.2
title: Влияние температуры нагревания сфер на их прочность

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.5.2
title: Состав рационов кур-несушек кросса Хайсекес браун

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.9.2
title: Затраты корма и переваримости питательных веществ корма

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.12.2
title: Площадь, производство и импорт пшеницы в Мали в 2010-2020 гг

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.7.2
title: Состав рациона контрольной и опытной групп бройлеров

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.8.2
title: Таксационная характеристика искусственных древостоев

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.5.3
title: Питательность рационов кур-несушек кросса Хайсекес браун

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.7.3
title: Сохранность цыплят-бройлеров в период откорма

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.10.3
title: Эффекты ОКС линий по морфометрическим параметрам

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.11.4
title: Изменение органолептических показателей образцов в процессе хранения

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.8.3
title: Надземная фитомасса ЖНП в абсолютно сухом виде под пологом исследуемых сосняков

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.7.4
title: Живая масса цыплят-бройлеров

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.4.2
title: Живая масса и показатели роста рыбы

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.7.5
title: Среднесуточный прирост живой массы цыплят-бройлеров

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.10.5
title: Эффекты СКС гибридов по высоте растения

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.3.2
title: Высота кукурузы в стадии молочной спелости початка

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.5.5
title: Яйценоскость кур-несушек кросса Хайсекс Браун при использовании в рационах протеолитических препаратов

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.7.6
title: Расход корма в день и конверсия корма в период выращивания

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.3.3
title: Накопление тяжёлых металлов

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.7.7
title: Экономическая эффективность использования рационов с модифицированной питательностью

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.10.6
title: Эффекты СКС гибридов по высоте заложения початка

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.2.1
title: Ratio of components in samples

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.5.7
title: Расход корма на производство яиц от кур-несушек кросса Хайсекс Браун при использовании в рационах протеолитических препаратов

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.2.2
title: Cupcake recipe

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.2.3
title: Nutritional and energy value of muffins

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.23649/jae.2024.42.5.8
title: Экономическая эффективность применения препарата ВП-1

description: Journal of Agriculture and Environment, Выпуск 2 (42) 2024
DOI: 10.6084/m9.figshare.7672691
title: Additional file 3: of Enhanced mammalian genome editing by new Cas12a orthologs with optimized crRNA scaffolds

description: Table S1. Oligonucleotides (oligos) for Cas12a gene synthesis. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.7672691.v1
title: Additional file 3: of Enhanced mammalian genome editing by new Cas12a orthologs with optimized crRNA scaffolds

description: Table S1. Oligonucleotides (oligos) for Cas12a gene synthesis. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.8196989
title: Additional file 2: of Identification and profiling of upland cotton microRNAs at fiber initiation stage under exogenous IAA application

description: Table S2. Names and sequences of the identified known miRNAs in six libraries. (XLSX 10 kb)