cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24091888.v1
title: What is the ecotoxicity of a given chemical for a given aquatic species? Predicting interactions between species and chemicals using recommender system techniques

description: Ecotoxicological safety assessment of chemicals requires toxicity data on multiple species, despite the general desire of minimizing animal testing. Predictive models, specifically machine learning (ML) methods, are one of the tools capable of solving this apparent contradiction as they allow to generalize toxicity patterns across chemicals and species. However, despite the availability of large public toxicity datasets, the data is highly sparse, complicating model development. The aim of this study is to provide insights into how ML can predict toxicity using a large but sparse dataset. We developed models to predict LC50-values, based on experimental LC50-data covering 2431 organic chemicals and 1506 aquatic species from the ECOTOX-database. Several well-known ML techniques were evaluated and a new ML model was developed, inspired by recommender systems. This new model involves a simple linear model that learns low-rank interactions between species and chemicals using factorization machines. We evaluated the predictive performances of the developed models based on two validation settings: 1) predicting unseen chemical-species pairs, and 2) predicting unseen chemicals. The results of this study show that ML models can accurately predict LC50-values in both validation settings. Moreover, we show that the novel factorization machine approach can match well-tuned, complex, ML approaches.
DOI: 10.6084/m9.figshare.24495012
title: Priority list of potential endocrine-disrupting chemicals in food chemical contaminants: a docking study and in vitro/epidemiological evidence integration

description: Diet is an important exposure route of endocrine-disrupting chemicals (EDCs), but many unfiltered potential EDCs remain in food. The in silico prediction of EDCs is a popular method for preliminary screening. Potential EDCs in food were screened using Endocrine Disruptome, an open-source platform for inverse docking, to predict the binding probabilities of 587 food chemical contaminants with 18 human nuclear hormone receptor (NHR) conformations. In total, 25 contaminants were bound to multiple NHRs such as oestrogen receptor α/β and androgen receptor. These 25 compounds mainly include pesticides and per- and polyfluoroalkyl substances (PFASs). The prediction results were validated with the in vitro data. The structural features and the crucial amino acid residues of the four NHRs were also validated based on previous literature. The findings indicate that the screening has good prediction efficiency. In addition, the epidemic evidence about endocrine interference of PFASs in food on children was further validated through this screening. This study provides preliminary screening results for EDCs in food and a priority list for in vitro and in vivo research.
DOI: 10.6084/m9.figshare.24495012.v1
title: Priority list of potential endocrine-disrupting chemicals in food chemical contaminants: a docking study and in vitro/epidemiological evidence integration

description: Diet is an important exposure route of endocrine-disrupting chemicals (EDCs), but many unfiltered potential EDCs remain in food. The in silico prediction of EDCs is a popular method for preliminary screening. Potential EDCs in food were screened using Endocrine Disruptome, an open-source platform for inverse docking, to predict the binding probabilities of 587 food chemical contaminants with 18 human nuclear hormone receptor (NHR) conformations. In total, 25 contaminants were bound to multiple NHRs such as oestrogen receptor α/β and androgen receptor. These 25 compounds mainly include pesticides and per- and polyfluoroalkyl substances (PFASs). The prediction results were validated with the in vitro data. The structural features and the crucial amino acid residues of the four NHRs were also validated based on previous literature. The findings indicate that the screening has good prediction efficiency. In addition, the epidemic evidence about endocrine interference of PFASs in food on children was further validated through this screening. This study provides preliminary screening results for EDCs in food and a priority list for in vitro and in vivo research.
DOI: 10.17632/sn3cdcw9mp.1
title: Role of trimethylamine metabolite in colon inflammation reveals toxicity at cellular levels

description: The data shows the effects of gut bacterial metabolite, TMA, on intestinal epithelial cell lines (HCT116 and HT29) and animal model. TMA causes compromised membrane integrity, cell cycle arrest and apoptosis in chronic exposure in cell lines and severe inflammation, and damage to the epithelial lining of mice, shortening the large intestine and strengthening the view that TMA is deleterious and might be the contributing factor in microbiota-induced intestinal diseases.
DOI: 10.17632/tckvm6hcwd.1
title: SHansen_SusceptibilityOfAdultPhlyctinus_Suppl.Material1

description: Susceptibility of Phlyctinus callosus and P. xerophilus to the entomopathogenic nematodes Steinernema yirgalemense and Heterorhabditis indica in virulence screenings.
DOI: 10.17632/fn2d8phjnm.1
title: SHansen_SusceptibilityOfAdultPhlyctinus_Suppl.Mat2

description: Susceptibility of two bioassay batches of adult Phlyctinus callosus and P. xerophilus to the entomopathogenic fungi Beauveria bassiana PPRI 5339 and Beauveria sp. isolate S3F3 in virulence screenings
DOI: 10.17632/2ymtvppy48.1
title: Analytical inventory of the photographic heritage of Institutional Welfare of the Universidad de Santander - Bucaramanga Campus

description: For the recovery of the photographic heritage of Institutional Welfare, it is necessary to improve the conditions of conservation of the records; In this sense, in addition to conservation units, the environmental conditions that favor the physical integrity of the support are validated. In person inspection, particulate matter and a strong musty smell are evident, including records with damage to their structure, which allows us to infer that the conservation conditions are not suitable.
DOI: 10.6084/m9.figshare.24495004
title: <b>Identifying road surface condition in a </b><b>national</b><b>-scale road network with multi-sourced open datasets</b>

description: Nigeria road surface condition
DOI: 10.57754/fdat.45bfp-kb756
title: GermaNet: Ein lexikalisch-semantisches Wortnetz

description: GermaNet ist ein lexikalisch-semantisches Wortnetz, das deutsche Nomina, Verben und Adjektive semantisch zueinander in Beziehung setzt, indem es lexikalische Einheiten, die dasselbe Konzept ausdrücken, in Synsets zusammenfasst und semantische Relationen zwischen diesen Synsets definiert. GermaNet hat viel mit dem Englischen WordNet®  gemeinsam und kann als ein Online-Thesaurus oder als eine Lightweight-Ontologie betrachtet werden.
description: GermaNet is a lexical-semantic net that relates German nouns, verbs, and adjectives semantically by grouping lexical units that express the same concept into synsets and by defining semantic relations between these synsets. GermaNet has much in common with the English WordNet® and can be viewed as an on-line thesaurus or a light-weight ontology.
description: Synsets: 167163; Lexical units: 215000; Literals: 199692; Number of conceptual relations: 181530; Number of lexical relations: 12602 (synonymy excluded); Number of split compounds: 121655.
Number of Interlingual Index (ILI) records: 28563 (separate download).
Number of Wiktionary sense descriptions: 29546 (separate download).
DOI: 10.57754/fdat.qk6np-nha93
title: Noise-masked Identifications by Native and Non-native listeners (NINNY)

description: Identification responses by American English (native) and Dutch (non-native) listeners to all American English vowels and consonants were collected under 3 levels of noise masking.
Funded by the Max Planck Institut für Psycholinguistik.
description: For the NINNY data set, native speakers of American English and Dutch non-native speakers of English listened to English syllables and identified either the consonant or the vowel. All 645 possible standard consonant-vowel (CV) and vowel-consonant (VC) sequences of American English were recorded by a female native speaker and centrally embedded in 1s of multi-speaker babble noise. The multi-speaker babble was combined with the test syllables at three levels of signal-to-noise ratios (SNRs): 0, 8, and 16 dB. These SNRs were chosen on the basis of a pretest to yield difficult, intermediate, and easy English phoneme perception for Dutch non-native listeners. Sixteen native listeners of American English and 16 non-native Dutch listeners, who were highly proficient in English, were presented with the syllables embedded in noise and identified each phoneme of each syllable at each noise level separately (3870 trials per listener).  Testing was spread across eight sessions, each lasting approximately 30-40 minutes. To guide listeners' responses, illustrative words for all phonemes were shown on a display (e.g., the word very for the consonant response /v/), and listeners signaled responses by clicking on the word exemplifying the phoneme they decided to have heard. Collected responses comprised correct responses (e.g., a click on very when identifying the consonant in the syllable /vi/) as well as errors (e.g., a click on very when identifying the consonant in the syllable /bi/.  The full identification response set contains a total of 123840 data points.
DOI: 10.5281/zenodo.10061721
title: dbgphmm KIR+hifi assembly

description: 10x.fa: HiFi reads of HG002 KIR region
dbgphmm.gfa, hifiasm.gfa, LJA.gfa: obtained assembly graphs
DOI: 10.5281/zenodo.10061720
title: dbgphmm KIR+hifi assembly

description: 10x.fa: HiFi reads of HG002 KIR region
dbgphmm.gfa, hifiasm.gfa, LJA.gfa: obtained assembly graphs
DOI: 10.57754/fdat.0955m-hk887
title: Index Thomisticus Treebank

description: The Index Thomisticus Treebank is the syntactically annotated subset of the Index Thomisticus corpus. The Index Thomisticus corpus features the opera omnia by Thomas Aquinas in Latin, for a total of around 11 million words.
The Index Thomisticus Treebank is a dependency-based treebank, whose annotation style resembles that of the Prague Dependency Treebank of Czech.
description: The Index Thomisticus website is located at https://itreebank.marginalia.it
DOI: 10.6084/m9.figshare.24495091
title: Supplementary Material for: Role of cerebroplacental ratio in predicting the outcome of pregnancies complicated by diabetes

description: Introduction: Our objective was to evaluate the strength of association and diagnostic performance of cerebroplacental ratio (CPR) in predicting the outcome of pregnancies with pre- and gestational diabetes mellitus. Methods: Pubmed, Embase, Cochrane and Google Scholar databases were searched. Inclusion criteria were pregnancies with gestational or pre-gestational diabetes undergoing assessment of CPR. The primary outcome was a composite score of perinatal mortality and morbidity as defined by the original publication. Secondary outcomes included preterm birth (PTB), gestational age (GA) at birth, mode of delivery, birthweight, perinatal death (PND), Apgar score &lt; 7 at 5 minutes, abnormal acid-base status, neonatal hypoglycemia, admission to neonatal intensive care unit (NICU) Head-to-head meta-analyses were used to directly compare the risk of each of the explored outcomes. For those outcomes found to be significant, computation of diagnostic performance of CPR was assessed using bivariate model. Results: Six studies (2743 pregnancies) were included. The association between low CPR and adverse composite perinatal outcome was not statistically significant(p= 0.096. In pregnancies complicated by GDM, fetuses with a low CPR had a significantly higher risk of birthweight &lt;10th percentile (OR: 5.83, 95% CI 1.98-17.12) and this association remains significant when using a CPR &lt;10th centile (p&lt;0.001). Fetuses with low CPR had also a significantly higher risk of perinatal death (PND) (OR: 6.15 p&lt;0.001) and admission to neonatal intensive care unit (NICU) (OR 3.32 , p&lt;0.001), but not of respiratory distress syndrome (RDS) (p= 0.752), Apgar score &lt;7 at 5 minutes (p=0.920), abnormal acid base status (p= 0.522) or neonatal hypoglycemia (p= 0.005). However, CPR showed a low diagnostic accuracy for detecting perinatal outcomes. Conclusion: CPR is associated but not predictive of adverse perinatal outcome in pregnancies complicated by gestational diabetes. The findings from this systematic review do not support the use of CPR as a universal screening for pregnancy complication in women with diabetes.
DOI: 10.6084/m9.figshare.24495091.v1
title: Supplementary Material for: Role of cerebroplacental ratio in predicting the outcome of pregnancies complicated by diabetes

description: Introduction: Our objective was to evaluate the strength of association and diagnostic performance of cerebroplacental ratio (CPR) in predicting the outcome of pregnancies with pre- and gestational diabetes mellitus. Methods: Pubmed, Embase, Cochrane and Google Scholar databases were searched. Inclusion criteria were pregnancies with gestational or pre-gestational diabetes undergoing assessment of CPR. The primary outcome was a composite score of perinatal mortality and morbidity as defined by the original publication. Secondary outcomes included preterm birth (PTB), gestational age (GA) at birth, mode of delivery, birthweight, perinatal death (PND), Apgar score &lt; 7 at 5 minutes, abnormal acid-base status, neonatal hypoglycemia, admission to neonatal intensive care unit (NICU) Head-to-head meta-analyses were used to directly compare the risk of each of the explored outcomes. For those outcomes found to be significant, computation of diagnostic performance of CPR was assessed using bivariate model. Results: Six studies (2743 pregnancies) were included. The association between low CPR and adverse composite perinatal outcome was not statistically significant(p= 0.096. In pregnancies complicated by GDM, fetuses with a low CPR had a significantly higher risk of birthweight &lt;10th percentile (OR: 5.83, 95% CI 1.98-17.12) and this association remains significant when using a CPR &lt;10th centile (p&lt;0.001). Fetuses with low CPR had also a significantly higher risk of perinatal death (PND) (OR: 6.15 p&lt;0.001) and admission to neonatal intensive care unit (NICU) (OR 3.32 , p&lt;0.001), but not of respiratory distress syndrome (RDS) (p= 0.752), Apgar score &lt;7 at 5 minutes (p=0.920), abnormal acid base status (p= 0.522) or neonatal hypoglycemia (p= 0.005). However, CPR showed a low diagnostic accuracy for detecting perinatal outcomes. Conclusion: CPR is associated but not predictive of adverse perinatal outcome in pregnancies complicated by gestational diabetes. The findings from this systematic review do not support the use of CPR as a universal screening for pregnancy complication in women with diabetes.
DOI: 10.57754/fdat.hshq9-w0g79
title: Interaktionale Sprache bei Andreas Gryphius
title: GryDraCo

description: The project investigates linguistic and literary phenomena in the dramas of Andreas Gryphius (1616-1664).
description: Historical text corpus in six languages: Latin, Greek, Hebrew, French, Italian, German.

- Time coverage: 1646-1663.
- LegalOwner: Universität Hamburg, Universität Göttingen.
- Genre: Early-Modern Dramas.
- Field Of Research: Linguistics, Literary studies.
- Creation Tools: INCEpTION, WebAnno.
- Website: https://gryphius.sprache-interaktion.de/ueber-das-projekt/dokumentation/
DOI: 10.11588/data/1mxydj
title: Doubly Bridged Anthracenes: Blue Emitters for OLEDs [data]

description: The photooxidative stability of a series of doubly bridged anthracenes was evaluated after their preparation via twofold macrocyclization of a bis(resorcinyl)anthracene. Lightfastness correlates with the energy levels of the highest occupied molecular orbital (HOMO), resulting in superior stability of the tetraesters compared to the tetraethers. The lengths and steric demand of the linker only plays a minor role for the ester-based compounds, which can be prepared in reasonable yields and thus tested in proof-of-concept organic light-emitting diodes. Double ester-bridging allows deep blue electro-luminescence, highlighting the importance of the choice of the functional groups used for macrocyclization.
DOI: 10.6084/m9.figshare.22674814.v1
title: Sample comments

description: Sample comments.
DOI: 10.6084/m9.figshare.24495103
title: Supplementary Material for: Role of cerebroplacental ratio in predicting the outcome of pregnancies complicated by diabetes

description: Introduction: Our objective was to evaluate the strength of association and diagnostic performance of cerebroplacental ratio (CPR) in predicting the outcome of pregnancies with pre- and gestational diabetes mellitus. Methods: Pubmed, Embase, Cochrane and Google Scholar databases were searched. Inclusion criteria were pregnancies with gestational or pre-gestational diabetes undergoing assessment of CPR. The primary outcome was a composite score of perinatal mortality and morbidity as defined by the original publication. Secondary outcomes included preterm birth (PTB), gestational age (GA) at birth, mode of delivery, birthweight, perinatal death (PND), Apgar score &lt; 7 at 5 minutes, abnormal acid-base status, neonatal hypoglycemia, admission to neonatal intensive care unit (NICU) Head-to-head meta-analyses were used to directly compare the risk of each of the explored outcomes. For those outcomes found to be significant, computation of diagnostic performance of CPR was assessed using bivariate model. Results: Six studies (2743 pregnancies) were included. The association between low CPR and adverse composite perinatal outcome was not statistically significant(p= 0.096. In pregnancies complicated by GDM, fetuses with a low CPR had a significantly higher risk of birthweight &lt;10th percentile (OR: 5.83, 95% CI 1.98-17.12) and this association remains significant when using a CPR &lt;10th centile (p&lt;0.001). Fetuses with low CPR had also a significantly higher risk of perinatal death (PND) (OR: 6.15 p&lt;0.001) and admission to neonatal intensive care unit (NICU) (OR 3.32 , p&lt;0.001), but not of respiratory distress syndrome (RDS) (p= 0.752), Apgar score &lt;7 at 5 minutes (p=0.920), abnormal acid base status (p= 0.522) or neonatal hypoglycemia (p= 0.005). However, CPR showed a low diagnostic accuracy for detecting perinatal outcomes. Conclusion: CPR is associated but not predictive of adverse perinatal outcome in pregnancies complicated by gestational diabetes. The findings from this systematic review do not support the use of CPR as a universal screening for pregnancy complication in women with diabetes.
DOI: 10.6084/m9.figshare.24495103.v1
title: Supplementary Material for: Role of cerebroplacental ratio in predicting the outcome of pregnancies complicated by diabetes

description: Introduction: Our objective was to evaluate the strength of association and diagnostic performance of cerebroplacental ratio (CPR) in predicting the outcome of pregnancies with pre- and gestational diabetes mellitus. Methods: Pubmed, Embase, Cochrane and Google Scholar databases were searched. Inclusion criteria were pregnancies with gestational or pre-gestational diabetes undergoing assessment of CPR. The primary outcome was a composite score of perinatal mortality and morbidity as defined by the original publication. Secondary outcomes included preterm birth (PTB), gestational age (GA) at birth, mode of delivery, birthweight, perinatal death (PND), Apgar score &lt; 7 at 5 minutes, abnormal acid-base status, neonatal hypoglycemia, admission to neonatal intensive care unit (NICU) Head-to-head meta-analyses were used to directly compare the risk of each of the explored outcomes. For those outcomes found to be significant, computation of diagnostic performance of CPR was assessed using bivariate model. Results: Six studies (2743 pregnancies) were included. The association between low CPR and adverse composite perinatal outcome was not statistically significant(p= 0.096. In pregnancies complicated by GDM, fetuses with a low CPR had a significantly higher risk of birthweight &lt;10th percentile (OR: 5.83, 95% CI 1.98-17.12) and this association remains significant when using a CPR &lt;10th centile (p&lt;0.001). Fetuses with low CPR had also a significantly higher risk of perinatal death (PND) (OR: 6.15 p&lt;0.001) and admission to neonatal intensive care unit (NICU) (OR 3.32 , p&lt;0.001), but not of respiratory distress syndrome (RDS) (p= 0.752), Apgar score &lt;7 at 5 minutes (p=0.920), abnormal acid base status (p= 0.522) or neonatal hypoglycemia (p= 0.005). However, CPR showed a low diagnostic accuracy for detecting perinatal outcomes. Conclusion: CPR is associated but not predictive of adverse perinatal outcome in pregnancies complicated by gestational diabetes. The findings from this systematic review do not support the use of CPR as a universal screening for pregnancy complication in women with diabetes.
DOI: 10.57754/fdat.sdvp5-z7r17
title: LAPPS-CLARIN GermaParl Metadata Enrichment

description: This resource contains enriched metadata records for the corpus 'GermaParl' (https://polmine.github.io/). The enriched metadata were created within the project 'Transatlantic Collaboration between the LAPPS Grid and CLARIN'.
The enriched metadata contain named entities, such as persons, locations and organizations. The code of the processing pipeline that create the enriched metadata is also provided.
The project has received funding from the Mellon Foundation.
DOI: 10.3886/e179181v1-142791
title: Code for: Judging Judge Fixed Effects

description: We propose a test for the identifying assumptions invoked in designs based on the random assignment of cases to judges. The standard identifying assumptions of exclusion and monotonicity imply that the conditional expectation of the outcome given the assigned judge's propensity to treat is a continuous function with bounded slope. We develop a nonparametric test of this restriction, show its asymptotic validity, and demonstrate its finite-sample performance in simulations. We apply our test in an empirical setting from the literature examining the effects of pre-trial detention on defendant outcomes in New York. When the assumptions are not satisfied, we propose weaker versions of the usual exclusion and monotonicity restrictions under which the IV estimator still converges to a proper weighted average of treatment effects.