cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26643679.v1
title: Additional file 2 of Exploring the molecular makeup of support cells in insect camera eyes

description: Additional file 2: STab 1. Listing genes used for the treemap.
DOI: 10.6084/m9.figshare.26643682
title: Additional file 3 of Exploring the molecular makeup of support cells in insect camera eyes

description: Additional file 3: STab 2. Listing genes used for heatmaps.
DOI: 10.6084/m9.figshare.26643682.v1
title: Additional file 3 of Exploring the molecular makeup of support cells in insect camera eyes

description: Additional file 3: STab 2. Listing genes used for heatmaps.
DOI: 10.6084/m9.figshare.26643685
title: Additional file 1 of Pre-pandemic trends and Black:White inequities in life expectancy across the 30 most populous U.S. cities: a population-based study

description: Additional file 1: Table 1.  Selected City-Level Sociodemographic Characteristics for the U.S. and the 30 Most Populous Cities.
DOI: 10.6084/m9.figshare.26643685.v1
title: Additional file 1 of Pre-pandemic trends and Black:White inequities in life expectancy across the 30 most populous U.S. cities: a population-based study

description: Additional file 1: Table 1.  Selected City-Level Sociodemographic Characteristics for the U.S. and the 30 Most Populous Cities.
DOI: 10.6084/m9.figshare.26643688
title: Additional file 2 of Pre-pandemic trends and Black:White inequities in life expectancy across the 30 most populous U.S. cities: a population-based study

description: Additional file 2: Table 2. Life Expectancy and 95% Confidence Intervals for the Total Population (Males and Females) by Racial Group at Four Time Points.
DOI: 10.5281/zenodo.13318346
title: Elbingerode Rats-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6084/m9.figshare.26643712
title: Additional file 2 of Detection of a novel Babesia sp. in Amblyomma javanense, an ectoparasite of Sunda pangolins

description: Additional file 2: Table S2. Babesia species used in phylogenetic analyses.
DOI: 10.6084/m9.figshare.26643712.v1
title: Additional file 2 of Detection of a novel Babesia sp. in Amblyomma javanense, an ectoparasite of Sunda pangolins

description: Additional file 2: Table S2. Babesia species used in phylogenetic analyses.
DOI: 10.15468/dl.tpmg4z
title: Occurrence Download

description: A dataset containing 613 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Issue is one of (Country mismatch, The taxon ID was not used in backbone matching, The scientific name differs on the record from that found in the checklist, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Individual count invalid, Individual count conflicts with occurrence status)",
 "OccurrenceStatus is Present",
 "TaxonKey is Chaetodontoplus Bleeker, 1876"
 ]
}

 The dataset includes 613 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065710-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13318362
title: Eldagsen Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.12748230
title: Protein structure data for "AI-predicted protein deformation encodes energy landscape perturbation"

description: AF2-predicted protein structures of WT and mutant proteins that have corresponding ddG measurements in the ThermoMutDB database of protein mutant stability measurements. PDB structures are compressed using FoldComp, and saved in "structures.zip".

Summary of the final dataset and results can be found in "results_summary.pkl".

Code used to plot figures can be found in "code4figs.zip".
DOI: 10.6084/m9.figshare.26564136.v1
title: Additional file 2 of Distinct COPD subtypes in former smokers revealed by gene network perturbation analysis

description: Additional file 2: Table S1. Excel file containing this table is attached. Clinical characteristics of COPD participants vary across clusters. The variables are sorted by descending significance. P-values were calculated with a Kruskal-Wallis test for continuous and ordinal variables and or a Chi-squared test for discrete and binary variables and asses if there are differences in variable distribution among clusters. Variable means (standard deviations) are also reported for all COPD participants overall, each COPD cluster, and all control subjects for comparison.
DOI: 10.5281/zenodo.12748229
title: Protein structure data for "AI-predicted protein deformation encodes energy landscape perturbation"

description: AF2-predicted protein structures of WT and mutant proteins that have corresponding ddG measurements in the ThermoMutDB database of protein mutant stability measurements. PDB structures are compressed using FoldComp, and saved in "structures.zip".

Summary of the final dataset and results can be found in "results_summary.pkl".

Code used to plot figures can be found in "code4figs.zip".
DOI: 10.5281/zenodo.13318392
title: Eldena Elde-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.yrkuee
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.227397 -32.254697, 149.227397 -32.26368, 149.229643 -32.26368, 149.229643 -32.265926, 149.23638 -32.265926, 149.23638 -32.254697, 149.227397 -32.254697))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065711-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bcvp8p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((145.032244 -36.586843, 145.032244 -36.591335, 145.038982 -36.591335, 145.038982 -36.586843, 145.032244 -36.586843))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065712-240626123714530/datasets/export for details.
DOI: 10.17632/btwpwh8292.1
title: d13CairCO2_LOESS_Interpolation

description: This is a smoothed curve of d13C of atmospheric CO2 from 16100 BCE to 2010 CE	 derived a range of data from Antarctic ice-core records (Eyer & Leuenberger, pers. comm.; Francey et al., 1999; Indermühle et al., 1999;Leuenberger et al., 1992) together with modern data from two Antarctic stations (Halley Bay and Palmer Station) of the NOAA ESRL Carbon Cycle Cooperative Global Air Sampling Network. contact: https://www.juanpedroferrio.com/	
03-04-2023 CO2 flask data updated for the period 1995-2014, Included linear extrapolation (2003-2014) until 2025

If you use the interpolation curve, please ALWAYS refer to:
1) the NOAA ESRL Carbon Cycle Cooperative Global Air Sampling Network:
https://gml.noaa.gov/aftp/data/trace_gases/co2c13/flask/README_surface_flask_co2c13.html
2) the original publication of the interpolation curve:
Ferrio JP, Araus JL, Buxó R, Voltas J, Bort J (2005) Water management practices and climate in ancient agriculture: inference from the stable isotope composition of archaeobotanical remains. Vegetation History and Archaeobotany 14:510-517
Please cite also the original published references of ice-core data:
Cleveland WS (1979) Robust locally weighted regression and smoothing scatterplots. Journal of the American Statistical Association 74:829-836
Francey RJ, Allison CE, Etheridge DM, Trudinger CM, Enting IG, Leuenberger M, Langenfelds RL, Michel E, Steele LP (1999) A 1000-year high precision record of delta C-13 in atmospheric CO2. Tellus B 51:170-193												
Indermühle A, Stocker TF, Joos F, Fischer H, Smith HJ, Wahlen M, Deck B, Mastroianni D, Tschumi J, Blunier T, Meyer R, Stauffer B (1999) Holocene carbon-cycle dynamics based on CO2 trapped in ice at Taylor Dome, Antarctica. Nature 398:121-126
Leuenberger M, Siegenthaler U, Langway CC (1992) Carbon isotope composition of atmospheric CO2 during the last ice age from an Antartic ice core. Nature 357:488-490											

COMMENTS:
Due to the much higher time resolution available for the last 2 centuries, the smoothing was performed dividing the data in two overlapping sections (-16100 to 1800) and (1760-2003).
The smoothing was done by fitting locally weighted least squares (LOESS) regression curves (Cleveland 1979) with a span of 0.1 and 0.4 for the first and second section, respectively.

NOTE: the source data included here should be only used to apply the interpolation curve,
original values from ice-cores and NOAA ESRL should be retrieved (and cited) from their original sources

BEAR IN MIND THAT THIS IS AN APPROXIMATION:
1) Ice core data, particularly regarding trapped CO2, has considerably dating errors
2) The data is based on Antarctic ice cores only. Considerable spatial variability in CO2 is expected
DOI: 10.6084/m9.figshare.26643775
title: Additional file 1 of Convergent evolution of the sensory pits in and within flatworms

description: Additional file 1: Table S1. Results of the reciprocal BLAST search in the transcriptomes of catenulids. Table S2. Accession numbers of the nucleotide sequences used to reconstruct the phylogeny of flatworms. Tables S3. Accession numbers of the protein sequences used to identify studied genes with the phylogentic approach. Table S4. Primers pairs used to clone genes of interest from cDNA library. Table S5. Pools of HCR probes.
DOI: 10.6084/m9.figshare.26643775.v1
title: Additional file 1 of Convergent evolution of the sensory pits in and within flatworms

description: Additional file 1: Table S1. Results of the reciprocal BLAST search in the transcriptomes of catenulids. Table S2. Accession numbers of the nucleotide sequences used to reconstruct the phylogeny of flatworms. Tables S3. Accession numbers of the protein sequences used to identify studied genes with the phylogentic approach. Table S4. Primers pairs used to clone genes of interest from cDNA library. Table S5. Pools of HCR probes.
DOI: 10.6084/m9.figshare.26643784
title: Additional file 1 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

description: Additional file 1: Supplementary Table 1. Additional chickens sequenced with HiFi reads and assembled for inclusion in the minigraph-cactus pangenome.
DOI: 10.6084/m9.figshare.26643784.v1
title: Additional file 1 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

description: Additional file 1: Supplementary Table 1. Additional chickens sequenced with HiFi reads and assembled for inclusion in the minigraph-cactus pangenome.
DOI: 10.6084/m9.figshare.26564139
title: Additional file 3 of Distinct COPD subtypes in former smokers revealed by gene network perturbation analysis

description: Additional file 3: Table S2. Excel file containing this table is attached. Differences in clinical characteristics between clusters 0 and 1. The variables are sorted by descending significance. P-values were calculated with a Wilcoxon rank sum test for continuous and ordinal variables and or a Chi-squared test for discrete and binary variables and asses if there are differences in variable distribution between these clusters.
DOI: 10.6084/m9.figshare.26643790
title: Additional file 3 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

description: Additional file 3: Supplementary Table 2. Chickens sequenced with short reads and genotyped using pangenome graph alignments.
DOI: 10.6084/m9.figshare.26643790.v1
title: Additional file 3 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

description: Additional file 3: Supplementary Table 2. Chickens sequenced with short reads and genotyped using pangenome graph alignments.
DOI: 10.6084/m9.figshare.26643793
title: Additional file 4 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

description: Additional file 4: Supplementary Table 3. Final parameters for PGGB for each chromosome.
DOI: 10.6084/m9.figshare.26643793.v1
title: Additional file 4 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

description: Additional file 4: Supplementary Table 3. Final parameters for PGGB for each chromosome.
DOI: 10.15468/dl.td4nr9
title: Occurrence Download

description: A dataset containing 661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((155.71732 -59.93561,157.33097 -83.44881,172.77592 -87.82872,174.85061 -85.5235,174.85061 -70.07856,174.38957 -52.78944,169.08757 -48.87057,156.17836 -50.2537,155.71732 -59.93561))",
 "TaxonKey is Sarcoptiformes"
 ]
}

 The dataset includes 661 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065713-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79mxpx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((146.31235 -36.586843, 146.31235 -36.591335, 146.314596 -36.591335, 146.314596 -36.586843, 146.31235 -36.586843))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065715-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ptjjjq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.557529 -32.254697, 149.557529 -32.259189, 149.564267 -32.259189, 149.564267 -32.254697, 149.557529 -32.254697))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065714-240626123714530/datasets/export for details.
DOI: 10.15468/dl.883kdh
title: Occurrence Download

description: A dataset containing 467 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.31.1_1, CHN.31.3_1, CHN.31.2_1, CHN.31.8_1, CHN.31.6_1)",
 "TaxonKey is Centropus bengalensis (Gmelin, 1788)"
 ]
}

 The dataset includes 467 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065716-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/nm29n9ngrm.1
title: Contactless metabolism estimation of small animals using high-frequency millimeter-wave radar. Ono H et al.

description: Raw data and codes in the following study.
DOI: 10.15468/dl.75rm2v
title: Occurrence Download

description: A dataset containing 325873 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaetodon Linnaeus, 1758"
 ]
}

 The dataset includes 325873 records from 461 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065706-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.slghq7
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xyleborus celsus Eichhoff, 1868"
 ]
}

 The dataset includes 44 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005387-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z478e3
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrobium aliciae Ames & Quisumb."
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020536-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75bej4
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus nanellus Tang & F.T.Wang"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158051-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qomxik
title: Occurrence Download

description: A dataset containing 334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diplotaxis virgata (Cav.) DC.",
 "HasCoordinate is true",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 334 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005387-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1a9dy6
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tayassu pecari (Link, 1795)",
 "Country is Mexico"
 ]
}

 The dataset includes 241 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005387-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3ecjh
title: Occurrence Download

description: A dataset containing 1305 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus nipponicus Franch. & Sav."
 ]
}

 The dataset includes 1305 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158067-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t0ocil
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Benthamia latifolia A.Rich.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005387-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qrv3n
title: Occurrence Download

description: A dataset containing 43260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Museu Paraense Emilio Goeldi - Lepidoptera Collection"
 ]
}

 The dataset includes 43260 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042186-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ys1mhx
title: Occurrence Download

description: A dataset containing 1421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Colibri delphinae (R.Lesson, 1839)"
 ]
}

 The dataset includes 1421 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005387-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7qda5
title: Occurrence Download

description: A dataset containing 18710 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus odoratus L."
 ]
}

 The dataset includes 18710 records from 536 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158082-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmanyu
title: Occurrence Download

description: A dataset containing 7541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 "Year 1960-2017",
 "HasCoordinate is true",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7541 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005387-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.