cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.s6k78/1
title: Cyprinella hybrid zone data 2008_2011

description: Phenotypic, mtDNA haplotype, and multilocus genotype data for Cyprinella collected in 2008 and 2011.
DOI: 10.5061/dryad.tg80g/1
title: Campitelli et al 2013 - Rooftop Leaf temperature

description: Raw leaf temperature data for the rooftop experiment. The column headers (Lobe, Heart, Hetero) refer to the three leaf shape genotypes outlined in the paper.
DOI: 10.5061/dryad.tg80g/2
title: Campitelli et al 2013 - Rooftop Fv_Fm & Survival

description: Raw data for photosynthetic efficiency (FV/FM) for each plant in the rooftop experiment, as described in the paper. For any given plant, if FV/FM is missing ("."), this indicates that plant has died; hence, this data can also be used to estimate the time length of survival for each plant.
DOI: 10.5061/dryad.tg80g/3
title: Campitelli et al 2013 - Relative Conductivity Non-acclimated plants

description: Relative conductivity values (estimated as described in the paper) for non-acclimated plant tissue. These data correspond to the "Freezing tolerance of non-acclimated tissue" experiment, described in the paper.
DOI: 10.5061/dryad.tg80g/4
title: Campitelli et al 2013 - Relative Conductivity Acclimated plants

description: Relative conductivity values of acclimated plant tissue, calculated as described in the paper. These data correspond to the "Freezing tolerance of cold-hardened tissue" experiment described in the paper
DOI: 10.5061/dryad.v240b/1
title: Wigley_etal_2016_JE_data

description: Leaf trait data for the dominant woody species found at 16 sites in Southern Africa, measures of soil fertility and climate are also provided for each site.
DOI: 10.5061/dryad.116js/1
title: Pro-atrial natriuretic peptide.data.04.02.2016

description: SPSS data file now in English without personally identifiable human subject information including 268 variables describing pre- intra- and postoperative course and plasma hormones + proANP in 40 individuals.
DOI: 10.5061/dryad.17m42/1
title: Trees

description: The complete set of phylogenetic trees in Newick format comprising all gene duplication events analysed in this study,
DOI: 10.5061/dryad.1kc6c/1
title: Supplementary Dataset 1

description: All raw data files used in the paper and all summary statistics used in final analyses.
DOI: 10.5061/dryad.27sk5/1
title: Forage availability in caribou range

description: Habitat characteristics measured in the field to quantify forage availability in the range of the Charlevoix caribou population, Québec, Canada, 2007-2008.
DOI: 10.5061/dryad.27sk5/2
title: Caribou data

description: Data set used to measure habitat selection by caribou. The UA variable differentiates use (1) and availability (0). The 3 reproductive statuses are represented by "solitary", "calf_alive", and "calf_dead".
DOI: 10.5061/dryad.27sk5/3
title: Wolf data

description: Data set used to measure habitat selection by wolf. The UA variable differentiates use (1) and availability (0).
DOI: 10.5061/dryad.27sk5/4
title: Bear data

description: Data set used to measure habitat selection by bear. The UA variable differentiates use (1) and availability (0).
DOI: 10.5061/dryad.27sk5/5
title: Results from individual resource selection models

description: The results from the 43 individual RSFs are reported in this table. For each variable, we report the estimate, standard error of the estimate (SE), degrees of freedom (DF), t value, p value (with alpha = 0.05), and lower and upper bounds of the 95% confidence interval (CI95%).
DOI: 10.5061/dryad.2853k/6
title: Supplementary phylogeny 2

description: Phylogenetic tree of all species in our sample of femora, as a NEXUS file.
DOI: 10.5061/dryad.2853k/7
title: Supplementary phylogeny 3

description: Phylogenetic tree of all species in our sample of humeri, as a NEXUS file.
DOI: 10.5061/dryad.2853k/8
title: Supplementary phylogeny 4

description: Phylogenetic tree of all species in our sample of tibiae, as a NEXUS file.
DOI: 10.5061/dryad.296ds/1
title: Analysis file details_meta

description: Overview of all data files and R scripts used in analyses.  Provides a description of each data file and the fields associated with it.
DOI: 10.5061/dryad.35h47/1
title: Capture histories for lions Panthera leo

description: Gender, DOB, Pride membership and location by conservancy of lions within community conservancies north of the Masai Mara, Kenya. Presence/absence (1/0) and age category also given for 6 month periods to generate capture history (column AB) for mark-recapture analysis with MARK.
DOI: 10.5061/dryad.3bv13/1
title: gamasid_slowed down_50times

description: The video shows a gamasid mite running at 8.1 mm/s with duty factors of about 0.72 and ipsilateral phase shifts between adjacent legs of about 0.49. The body length of the specimen was about 1.3 mm. The sequence is slowed down to 1/50 of the recording speed.
DOI: 10.5061/dryad.3bv13/2
title: trombidid_slow_slowed down_50times

description: A trombidid mite (body length: about 0.8 mm) running at about 34 mm/s with duty factors of about 0.57 and ipsilateral phase shifts of about 0.53. The sequence is slowed down to 1/50 of the recording speed.
DOI: 10.5061/dryad.40494/30
title: Isolated rep 1_fig 6_pt 1a
DOI: 10.5061/dryad.40494/31
title: Isolated rep 1_fig 6_pt 1b
DOI: 10.5061/dryad.40494/32
title: Isolated rep 1_fig 6_pt 2a
DOI: 10.5061/dryad.40494/33
title: Isolated rep 1_fig 6_pt 2b
DOI: 10.5061/dryad.40494/34
title: Isolated rep 1_fig 6_pt 2c
DOI: 10.5061/dryad.40494/35
title: Isolated rep 1_fig 6_pt 2d
DOI: 10.5061/dryad.40494/36
title: Intact rep 6_fig 5_part 1a
DOI: 10.5061/dryad.40494/37
title: Intact rep 6_fig 5_part 1b
DOI: 10.5061/dryad.4351q/1
title: Maternal environment and DNA methylation patterns

description: Data collected in the field for 26 Eastern bluebird nests and the one randomly selected nestling from each of the 25 successfully hatched nests. Nest data include yolk testosterone, breeding density, clutch size, and brood size. Nestling data include sex, mass, growth rate, and methylation patterns.
DOI: 10.5061/dryad.4tb10/1
title: Hyla GBS genotypes in gzip-compressed VCF format

description: The VCF file contains genotypes for 4 male and 4 female frogs of 4 species, H. arborea, H. intermedia, H. orientalis, and H. molleri. H. arborea sample names begin with "Ha", H. intermedia with "Hi", H. orientalis with "Ho", and H. molleri with "Hm". Samples with names containing "F" are female, samples with names containing "M" are male.Genotyping-by-sequencing libraries were constructed with restriction enzymes EcoRI and MseI, with a selective nucleotide on the MseI PCR primer. Single-end Illumina reads were aligned to a low-coverage draft genome of H. arborea, and SNPs called with SAMtools. Raw genotypes were filtered based on genotype quality, missing data, and minor allele frequency.
DOI: 10.5061/dryad.4tb10/2
title: Hyla Dmrt1 exon 1 phased alignment

description: Alignment of Dmrt1 exon 1 and upstream sequences of five Hyla species. Phased X and Y haplotypes were determined with PHASE software. All sites containing indel variation within or between species were removed. All sequences ending in "X" or "Y" could be assigned to the X or Y chromosome. See readme file for key to sample names.
DOI: 10.5061/dryad.4tb10/3
title: Hyla Dmrt1 exon 3 phased alignment

description: Alignment of Dmrt1 exon 3 and adjacent partial intron sequences of five Hyla species. Phased X and Y haplotypes were determined with PHASE software. All sites containing indel variation within or between species were removed. All sequences ending in "X" or "Y" could be assigned to the X or Y chromosome. See readme file for key to sample names.
DOI: 10.5061/dryad.4tb10/4
title: Hyla Kank1 intron 10 phased alignment

description: Alignment of Kank1 intron 10 sequences of five Hyla species. Phased X and Y haplotypes were determined with PHASE software. All sites containing indel variation within or between species were removed. All sequences ending in "X" or "Y" could be assigned to the X or Y chromosome. See readme file for key to sample names.
DOI: 10.5061/dryad.61jq1/9
title: seed-add-data-output-taxa-table-cover

description: Contains data on each individual taxa in the cover data set
DOI: 10.5061/dryad.7nb70/1
title: Single-copy analyses

description: This file contains filtered transcriptome assemblies for S. sempervirens, S. giganteum, M. glyptostroboides, and T. occidentalis. These files serve as input for our concordance analysis pipleline located at https://github.com/nstenz/toca
DOI: 10.5061/dryad.7nb70/2
title: Multi-copy analyses

description: This directory contains .fasta alignments and PAML (codeml) outputs. Files are split between a 2-copy and 3-copy directory based on the number of putative homeologous sequences in hexaploid S. sempervirens.
DOI: 10.5061/dryad.8pf83/1
title: Cycle amplitude genetic differences

description: This is genetic summary statistics from demographic simulations with different cycle amplitudes (High, Medium, Low). All summary statistic are averaged across the 10 simulated populations. In total there are 25 replicates for each cycle amplitude across 500 years.
DOI: 10.5061/dryad.8pf83/2
title: Dispersal difference simulations.

description: Genetic summary statistics for demographic simulations with different dispersal scenarios (constant synchronous, constant non-synchronous, phase dependent dispersal). Summary statistics are averaged across 10 populations for all 500 generations.
DOI: 10.5061/dryad.dk8q3/1
title: data of each analysis from the article

description: This file has three sheets. One for each analysis mentioned in the article. Each sheet contains the raw response variable (in bold) fixed and random effects.
DOI: 10.5061/dryad.g8j01/1
title: Unique_individual_genotypes

description: A tab-delimited text file containing microsatellite genotypes for unique individual canids detected via non-invasive genetic sampling. The first line contains a header that includes locus names. The first column contains the identification number for each individual. The following columns contain alleles. Each locus is represented in two columns. Missing data are coded as zero.
DOI: 10.5061/dryad.g8j01/2
title: Individual_scat_locations

description: Tab-delimited text file containing individual canids detected via non-invasive genetic sampling and their geographic coordinates. The first column contains the identification code for each individual. The second column contains the identification code for the individual fecal (scat) sample from which those individuals were genotyped. The third column contains the year the sample was collected. The remaining columns contain information for the geographic coordinates, which are in UTM. Note that for UTM coordinates are for the northern hemisphere.
DOI: 10.5061/dryad.g8j01/3
title: Red_wolf_coyote_original_genotypes

description: GenePop file containing original genotypes used to simulate hybridization scenarios. The first population contains genotypes for coyotes captured in North Carolina and Virginia. The second population contains genotypes for the red wolves used to found the captive red wolf population.
DOI: 10.5061/dryad.gd4dc/2
title: Raw capture sequencing reads; Location: S; Ecotype: C

description: Raw capture sequencing reads for Littorina saxatilis from the original Spanish location (S), "crab" ecotype. Each fastq file represents reads from one individual.
DOI: 10.5061/dryad.hp8nv/2
title: Volatile data

description: This table shows the corrected peak areas by fresh plant mass for each sample. For the X.campestris pv. campestris infected plant samples, disease severity is also noted.
DOI: 10.5061/dryad.k82pd/1
title: Innovation_Collective_Brain_Language_Analysis

description: Data to replicate analysis on speaker size and language optimization.
DOI: 10.5061/dryad.kv322/1
title: Experiment A
DOI: 10.5061/dryad.kv322/2
title: Experiment B
DOI: 10.5061/dryad.kv322/3
title: Experiment C
DOI: 10.5061/dryad.mj0k3/1
title: Data_for_repository
DOI: 10.5061/dryad.n36sn/1
title: Biomass data

description: The file contains all the biomass data in the experiment.
DOI: 10.5061/dryad.p1m52/11
title: Supplementary File S8

description: pdf with SMRT-ML trees for the UCE data
DOI: 10.5061/dryad.p1m52/12
title: Supplementary File S9

description: pdf with the sources of images used in Figure 6 of Meiklejohn et al. "Analysis of a rapid evolutionary radiation using ultraconserved elements (UCEs): Evidence for a bias in some multi-species coalescent methods"
DOI: 10.5061/dryad.p1m52/13
title: Meiklejohn et al. UCE alignments, unedited

description: gzipped tar file containing 1479 individual nexus files, each with a UCE alignment
DOI: 10.5061/dryad.p1m52/14
title: Meiklejohn combined evidence data file

description: gzipped nexus file with all data (after the editing described in the text). All of the individual UCEs, nuclear introns, and mitochondrial gene regions are indicated using CHARSETS. Partitioning schemes identified using PartitionFinder are also included.
DOI: 10.5061/dryad.p1m52/15
title: SMRT-raxMRP perl script

description: perl script for the SMRT-ML analysis
DOI: 10.5061/dryad.p56p6/1
title: Feather SEM images

description: Collection of SEM images used for measuring melanosome shape in Palaeognathae. See separate metadata.csv file for species names.
DOI: 10.5061/dryad.p56p6/2
title: Feather SEM metadata

description: Image ID, species names, and museum metadata associated with SEM images
DOI: 10.5061/dryad.p56p6/3
title: Melanosome shape and color measurements

description: Mean values for melanosome and color traits measured for different palaeognath feather samples
DOI: 10.5061/dryad.q810f/1
title: Supplemental Table 1

description: csv file with field sampling data for species co-occurences, rooting level and pH values in each of the 0.25 m2 quadrats sampled in the Schefferville fens, with accompanying READ_ME.rtf file giving details of sampling method and defining abbreviations
DOI: 10.5061/dryad.q810f/2
title: Supplemental_Table_2

description: csv file giving co-occurrence results for all pairwise combinations of Cyperaceae species in Schefferville fens, with accompanying READ_ME.rtf file giving details of column headings and abbreviations used.
DOI: 10.5061/dryad.q810f/3
title: DNA alignment

description: Alignment of sequence data for ETS, ITS, matK, trnL-trnF regions for species of Cyperaceae in Schefferville fens
DOI: 10.5061/dryad.qb814/1
title: Bushman Data

description: This folder includes all data necessary to reproduce the reported findings. Some files overlap in content but are formatted to facilitate analysis (R code at https://github.com/falciparum/Competition-Analysis.git). Data include parasitemia, genotype, age, location, year of sample collection, microsatellite genotyping results, MOI frequencies, and certain controls used to correct results for mixed-genotype infections.
DOI: 10.5061/dryad.0672g/1
title: Phylogenetic and functional mechanisms of direct and indirect interactions among alien and native plants
DOI: 10.5061/dryad.23n6p/1
title: Lonsdorf et al. migration model data and code
DOI: 10.5061/dryad.296ds/2
title: Data files

description: Includes 7 data files: 1) Crown radii, 2) Individual fruits, 3) Measured dispersal distances, 4) Mechanistic model results, 5) Parent tree information, 6) Seed seedling sapling distributions, 7) Seed shadows
DOI: 10.5061/dryad.296ds/3
title: R scripts

description: Includes three R scripts: 1) Make figures, 2) Variation in rate of descent and dispersal, 3) Mechanistic models
DOI: 10.5061/dryad.3bv13/3
title: trombidid_quick_slowed down_50times

description: A trombidid mite (body length about 0.8 mm) running at about 42 mm/s with duty factors of about 0.54 and ipsilateral phase shifts of about 0.59. The sequence is slowed down to 1/50 of the recording speed.
DOI: 10.5061/dryad.5b5v4/1
title: von_Ronn_SWALLOW.vcf

description: VCF file containing the filtered SNPs called from the STACKs pipeline used in the population genomic analyses.
DOI: 10.5061/dryad.5b5v4/2
title: von_Ronn_SWALLOW_loc

description: Bayescan files containing the unfiltered SNPs called from the STACKs pipeline used in the outlier analyses - both location and migration groupings are provided.
DOI: 10.5061/dryad.5d972/1
title: Fish tracker source code and example data

description: This repository contains the source code of the fish tracker, and its post-processor, described in the associated article. It also includes the code of a reference data generator, to create synthetic data used to test the fish tracker. Finally, it contains a set of example data of a 3 days post fertilisation zebrafish larva.
DOI: 10.5061/dryad.5t2k7/1
title: Tung et al data for survival analyses

description: This file contains data to test for the effects of early adversity on adult survival.
DOI: 10.5061/dryad.5t2k7/2
title: Tung et al data for analyses of social connectedness

description: This file contains data to test the effects of early adversity on social connectedness in adulthood.
DOI: 10.5061/dryad.664cp.1
title: Data from: Heme pathway evolution in kinetoplastid protists
DOI: 10.5061/dryad.664cp.2
title: Data from: Heme pathway evolution in kinetoplastid protists
DOI: 10.5061/dryad.664cp.2/22.2
title: sequence_aligned

description: This file contain all the sequences for each trees in separate file.
DOI: 10.5061/dryad.664cp.2/23.2
title: sequence_aligned_and_bloc_selected

description: This file contain all the sequences aligned after bloc removal for each trees.
DOI: 10.5061/dryad.664cp.2/24.2
title: trees
DOI: 10.5061/dryad.7nb70/3
title: Transcriptome assemblies

description: Trinity assemblies for four taxa, both with and without EviGene filtering
DOI: 10.5061/dryad.8fb47/1
title: K34_CfluxBF

description: The eddy flux data used in this paper for k34 site. The data are processed in the same way as Restrepo-Coupe et al. 2013. What drives the seasonality of photosynthesis across the Amazon basin? A cross-site analysis of eddy flux tower measurements from the Brasil flux network. Agricultural and forest meteorology, 182, 128-144.
DOI: 10.5061/dryad.8fb47/2
title: CAX_CfluxBF

description: The eddy flux data used in this paper for CAX site. The data are processed in the same way as Restrepo-Coupe et al. 2013. What drives the seasonality of photosynthesis across the Amazon basin? A cross-site analysis of eddy flux tower measurements from the Brasil flux network. Agricultural and forest meteorology, 182, 128-144.
DOI: 10.5061/dryad.8fb47/3
title: RJA_CfluxBF

description: The eddy flux data used in this paper for RJA site. The data are processed in the same way as Restrepo-Coupe et al. 2013. What drives the seasonality of photosynthesis across the Amazon basin? A cross-site analysis of eddy flux tower measurements from the Brasil flux network. Agricultural and forest meteorology, 182, 128-144
DOI: 10.5061/dryad.8fb47/4
title: Tapajos-K67 Camera_Part 1 (2010 Jan-Mar)

description: The first part of k67 site near-surface camera data, which is used for deriving leaf phenology at k67 site.
DOI: 10.5061/dryad.8fb47/5
title: Tapajos-K67 Camera_Part 2 (2010 Apr-Jun)

description: The second part of k67 site near-surface camera data, which is used for deriving leaf phenology at k67 site.
DOI: 10.5061/dryad.8fb47/6
title: Tapajos-K67 Camera_Part 3 (2010 Jul-Sep)

description: The third part of k67 site near-surface camera data, which is used for deriving leaf phenology at k67 site..
DOI: 10.5061/dryad.8pf83/3
title: Mixed population genetic simulations

description: Genetic summary statistics for demographic simulations with high and low amplitude cyclic populations exchanging migrants in a linear stepping stone model. Low (1% dispersal), Medium (3% dispersal) and high (6 % dispersal) dispersal scenarios were simulated and genetic summary statistics are averaged across amplitude treatments in each year.
DOI: 10.5061/dryad.ct92j/1
title: abaecin_challenged
DOI: 10.6084/m9.figshare.5738949.v1
title: Additional file 4 of Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross-reactivity against naturally expressed proteins in human tissues

description: TableS4_Cancer. Comma-separated table containing Table S4. (CSV 67 kb)
DOI: 10.6084/m9.figshare.5738934
title: Additional file 3 of Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross-reactivity against naturally expressed proteins in human tissues

description: TableS3_AutoimmuneDisease. Comma-separated table containing Table S3. (CSV 20 kb)
DOI: 10.6084/m9.figshare.5738934.v1
title: Additional file 3 of Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross-reactivity against naturally expressed proteins in human tissues

description: TableS3_AutoimmuneDisease. Comma-separated table containing Table S3. (CSV 20 kb)
DOI: 10.6084/m9.figshare.5738916
title: Additional fileÂ 2: of Impact of FHIT loss on the translation of cancer-associated mRNAs

description: A list of oligonucleotides used. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5738916.v1
title: Additional fileÂ 2: of Impact of FHIT loss on the translation of cancer-associated mRNAs

description: A list of oligonucleotides used. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5738904
title: Additional file 2 of Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross-reactivity against naturally expressed proteins in human tissues

description: TableS2_Healthy. Comma-separated table containing Table S2. (CSV 67 kb)
DOI: 10.6084/m9.figshare.5738904.v1
title: Additional file 2 of Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross-reactivity against naturally expressed proteins in human tissues

description: TableS2_Healthy. Comma-separated table containing Table S2. (CSV 67 kb)
DOI: 10.6084/m9.figshare.5738880
title: Additional file 10: of Impact of FHIT loss on the translation of cancer-associated mRNAs

description: Transcripts with Fhit-mediated changes in the relative occupancy of 5â -UTR/coding sequence. (XLSX 1582 kb)
DOI: 10.6084/m9.figshare.5738880.v1
title: Additional file 10: of Impact of FHIT loss on the translation of cancer-associated mRNAs

description: Transcripts with Fhit-mediated changes in the relative occupancy of 5â -UTR/coding sequence. (XLSX 1582 kb)
DOI: 10.6084/m9.figshare.5738874
title: Additional file 1 of Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross-reactivity against naturally expressed proteins in human tissues

description: TableS1_InfectiousDisease. Comma-separated table containing Table S1. (CSV 80 kb)
DOI: 10.6084/m9.figshare.5738874.v1
title: Additional file 1 of Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross-reactivity against naturally expressed proteins in human tissues

description: TableS1_InfectiousDisease. Comma-separated table containing Table S1. (CSV 80 kb)
DOI: 10.6084/m9.figshare.5738832
title: Additional file 2: Table S2. of Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure

description: Recombination regions identified and removed for the Mycoplasma genitalium phylogeny. (XLS 89 kb)
DOI: 10.6084/m9.figshare.5738832.v1
title: Additional file 2: Table S2. of Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure

description: Recombination regions identified and removed for the Mycoplasma genitalium phylogeny. (XLS 89 kb)
DOI: 10.6084/m9.figshare.5738814
title: Additional file 1: Table S1. of Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure

description: Illumina sequenced genomes of M. genitalium isolates and related genomes: mapping and assembly statistics and genome characteristics. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.5738790
title: Additional file 6: Figure S5. of Under control: how a dietary additive can restore the gut microbiome and proteomic profile, and improve disease resilience in a marine teleostean fish fed vegetable diets

description: Krona analysis of the relative abundance of intestinal bacterial OTUs identified in fish fed D4. (HTML 250 kb)