cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25442/hku.30828212.v1
title: Data for "Not All Roads Lead to Red: The genetics of sexual dichromatism in the northern cardinal (<i>Cardinals cardinalis</i>)"

description: Attached are the data for "Not All Roads Lead to Red: The genetics of sexual dichromatism in the northern cardinal (<i>Cardinals cardinalis</i>)" submitted to MBE for review in December 2025. They include:gene_reanno.list: list of the gene identifiers and names from the northern cardinal genome annotation used in the analysesmetadata.txt: contains all information used in the analyses outlined in the paper, such as Band, Sample_ID, Tissue_Type, Treatment, Age, Sex, Wing, Tail, Weight, Molt_Score, AvgBillHueMolting, AvgBillSaturationMolt, AvgBillBrightnessMolt, plasma_ketocarotenoids, plasma_non-ketos, plasma_lutein_zeax, plasma_canary_xanthophylls_conc, follicle_ketocarotenoids, follicle_non-ketos, follicle_lutein_zeax, and follicle_canary_xanthophylls_conc wild_cardinals_all_genes.counts: raw counts from RSEMwild_cardinals.list: sample names wild_samples_TPM.tsv: transcripts per million from RSEM
DOI: 10.15468/dl.t72hvk
title: Occurrence Download

description: A dataset containing 5875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is China",
 "TaxonKey is Agrimonia pilosa"
 ]
}

 The dataset includes 5875 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039909-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/68wtxo
title: PAN-00142584 - terra sigillata plate type Drag. 18/31 and 31

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00142584&lt;/p&gt;
description: Modified: 2025-10-22T17:01:50+02:00
DOI: 10.6084/m9.figshare.30829844
title: Supplementary Material for: Environmental factors and risk of early-onset dementia: a population-based case-control study

description: Introduction: Dementia with symptom onset before the age of 65 is referred to as early-onset dementia (EOD). Many gaps exist regarding EOD etiology, including the role of environmental factors.
Methods: We conducted a population-based case-control study in Modena province, Northern Italy, enrolling and geocoding 326 EOD cases and 1941 sex- and age-matched controls, to investigate the association of traffic-related benzene, green spaces around the place of residence, and exposure to artificial outdoor light at night. We used non-linear modeling to assess the relation between environmental variables and disease risk, overall and separately for Alzheimer’s dementia (AD) and non-AD.
Results: Green spaces generally showed an inverse association with EOD risk that was almost linear for AD and inverted U-shaped for non-AD. We observed a weak positive association between traffic-related benzene exposure and EOD risk that seemed limited to AD, with little change in risk for non-AD. Exposure to light at night showed an inverse linear association with small differences across the two disease subgroups. Analyses stratified by sex and age showed generally stronger (but statistically imprecise) associations in females and older individuals. 
Conclusion: Overall, these results are consistent with some environmental influences on EOD risk, particularly with a beneficial effect of green spaces and light at night, as well as a possible adverse role of air pollution, particularly for AD.
DOI: 10.6084/m9.figshare.30829844.v1
title: Supplementary Material for: Environmental factors and risk of early-onset dementia: a population-based case-control study

description: Introduction: Dementia with symptom onset before the age of 65 is referred to as early-onset dementia (EOD). Many gaps exist regarding EOD etiology, including the role of environmental factors.
Methods: We conducted a population-based case-control study in Modena province, Northern Italy, enrolling and geocoding 326 EOD cases and 1941 sex- and age-matched controls, to investigate the association of traffic-related benzene, green spaces around the place of residence, and exposure to artificial outdoor light at night. We used non-linear modeling to assess the relation between environmental variables and disease risk, overall and separately for Alzheimer’s dementia (AD) and non-AD.
Results: Green spaces generally showed an inverse association with EOD risk that was almost linear for AD and inverted U-shaped for non-AD. We observed a weak positive association between traffic-related benzene exposure and EOD risk that seemed limited to AD, with little change in risk for non-AD. Exposure to light at night showed an inverse linear association with small differences across the two disease subgroups. Analyses stratified by sex and age showed generally stronger (but statistically imprecise) associations in females and older individuals. 
Conclusion: Overall, these results are consistent with some environmental influences on EOD risk, particularly with a beneficial effect of green spaces and light at night, as well as a possible adverse role of air pollution, particularly for AD.
DOI: 10.6084/m9.figshare.30829850
title: Supplementary Material for: Peanut inhalant challenge in peanut allergic children and adolescents

description: Introduction: The risk of allergic reactions due to airborne exposure to peanuts remains uncertain. Although a few small studies indicate that this risk is low, further evidence is needed. We aimed to assess the risk of allergic reactions during a standardized, open peanut inhalation challenge in a large cohort of peanut allergic children and adolescents.
Methods:
Patients aged 5–18 years with probable peanut allergy were recruited to undergo a standardized inhalation challenge. Inclusion criteria were either having a history of allergic reaction involving more than one organ system and having Ara h 2 &gt; 2,0 kU/l or having no known exposure and Ara h 2 &gt; 5,0 kU/l. Participants were exposed to an open bag of peanuts positioned 30 cm from the nose for 10 minutes, followed by a 20-minute observation period. Spirometry and physical examination were performed before and after the challenge. Data were collected on previous peanut reactions when available, atopic comorbidities, specific IgE levels for peanut and Ara h 2, and family history. Allergic responses were classified as subjective or objective. Objective reactions were defined as visible or measurable signs, including urticaria, erythema, rhinitis, conjunctivitis, angioedema, or respiratory symptoms (e.g., stridor, wheezing, or ≥12% reduction in forced expiratory volume in 1 second (FEV1) from baseline). Subjective reactions were defined as symptoms other than those defined as objective.
Results:
A total of 323 children and adolescents with probable peanut allergy completed the inhalation challenge. Fifty participants (15.5%) showed possible allergic reactions during or after exposure, of whom 10 (3.1%) exhibited objective reactions. Only four (1,2%) participants received medical treatment. No severe adverse events occurred, and no participants required hospitalization.
Conclusion:
The findings indicate that the risk of significant allergic reactions from airborne peanut exposure is low. These results may offer reassurance to patients, caregivers, and healthcare professionals regarding the safety of being in proximity to others consuming peanuts.
DOI: 10.6084/m9.figshare.30829850.v1
title: Supplementary Material for: Peanut inhalant challenge in peanut allergic children and adolescents

description: Introduction: The risk of allergic reactions due to airborne exposure to peanuts remains uncertain. Although a few small studies indicate that this risk is low, further evidence is needed. We aimed to assess the risk of allergic reactions during a standardized, open peanut inhalation challenge in a large cohort of peanut allergic children and adolescents.
Methods:
Patients aged 5–18 years with probable peanut allergy were recruited to undergo a standardized inhalation challenge. Inclusion criteria were either having a history of allergic reaction involving more than one organ system and having Ara h 2 &gt; 2,0 kU/l or having no known exposure and Ara h 2 &gt; 5,0 kU/l. Participants were exposed to an open bag of peanuts positioned 30 cm from the nose for 10 minutes, followed by a 20-minute observation period. Spirometry and physical examination were performed before and after the challenge. Data were collected on previous peanut reactions when available, atopic comorbidities, specific IgE levels for peanut and Ara h 2, and family history. Allergic responses were classified as subjective or objective. Objective reactions were defined as visible or measurable signs, including urticaria, erythema, rhinitis, conjunctivitis, angioedema, or respiratory symptoms (e.g., stridor, wheezing, or ≥12% reduction in forced expiratory volume in 1 second (FEV1) from baseline). Subjective reactions were defined as symptoms other than those defined as objective.
Results:
A total of 323 children and adolescents with probable peanut allergy completed the inhalation challenge. Fifty participants (15.5%) showed possible allergic reactions during or after exposure, of whom 10 (3.1%) exhibited objective reactions. Only four (1,2%) participants received medical treatment. No severe adverse events occurred, and no participants required hospitalization.
Conclusion:
The findings indicate that the risk of significant allergic reactions from airborne peanut exposure is low. These results may offer reassurance to patients, caregivers, and healthcare professionals regarding the safety of being in proximity to others consuming peanuts.
DOI: 10.6084/m9.figshare.30829853
title: Supplementary Material for: Efficacy and Safety of Ustekinumab in Asian Patients With Moderately to Severely Active Ulcerative Colitis: A Subpopulation Analysis of UNIFI Long-term Extension Through 4 Years

description: Introduction: This final long-term extension (LTE) analysis assessed long-term efficacy and safety of ustekinumab (UST) in the Asian patient subpopulation with ulcerative colitis (UC) in the UNIFI study.
Methods: Patients who completed 44 weeks of subcutaneous (SC) UST maintenance and agreed to enter the LTE continued maintenance therapy (UST 90 mg SC every 8 [q8w] or 12 weeks [q12w] or placebo). The LTE lasted from Week (WK) 44 through WK220 (final safety visit), with the final efficacy visit at WK200. At WK56, randomized patients could receive a dose adjustment. Descriptive outcomes, such as symptomatic remission, full Mayo score outcomes, endoscopic improvement, and safety, were assessed.
Results: Forty-one randomized patients entered the LTE at WK44 and continued UST treatment (UST 90 mg SC q12w, 46.3% [19/41] or q8w, 53.7% [22/41]) through WK188. Symptomatic remission was maintained through WK200 (62.5% and 37.9% of patients in the UST 90 mg SC q12w and q8w groups, respectively). At WK200, 78.9% and 50.0% of patients in the UST 90 mg SC q12w and q8w groups, respectively, were in corticosteroid-free symptomatic remission. Full Mayo clinical remission/response rates at WK200 were 58.8%/94.1% and 75.0%/100.0% in UST 90 mg SC q12w and q8w groups, respectively (observed). Endoscopic healing rates at WK200 in the UST 90 mg SC q12w and q8w groups were 70.6% and 91.7%, respectively (observed). No unexpected safety concerns were observed.
Conclusions: Despite the small sample size which limited data interpretation, long-term UST 90 mg SC treatment is safe and efficacious in Asian patients with moderately to severely active UC demonstrating clinical benefit, consistent with the global population. In addition, Asian patients with relatively stable clinical condition may benefit from UST 90 mg SC when administered in a q12w treatment regimen given its sustained efficacy and low discontinuation rates.
Keywords: long-term extension, ulcerative colitis, ustekinumab
DOI: 10.6084/m9.figshare.30829853.v1
title: Supplementary Material for: Efficacy and Safety of Ustekinumab in Asian Patients With Moderately to Severely Active Ulcerative Colitis: A Subpopulation Analysis of UNIFI Long-term Extension Through 4 Years

description: Introduction: This final long-term extension (LTE) analysis assessed long-term efficacy and safety of ustekinumab (UST) in the Asian patient subpopulation with ulcerative colitis (UC) in the UNIFI study.
Methods: Patients who completed 44 weeks of subcutaneous (SC) UST maintenance and agreed to enter the LTE continued maintenance therapy (UST 90 mg SC every 8 [q8w] or 12 weeks [q12w] or placebo). The LTE lasted from Week (WK) 44 through WK220 (final safety visit), with the final efficacy visit at WK200. At WK56, randomized patients could receive a dose adjustment. Descriptive outcomes, such as symptomatic remission, full Mayo score outcomes, endoscopic improvement, and safety, were assessed.
Results: Forty-one randomized patients entered the LTE at WK44 and continued UST treatment (UST 90 mg SC q12w, 46.3% [19/41] or q8w, 53.7% [22/41]) through WK188. Symptomatic remission was maintained through WK200 (62.5% and 37.9% of patients in the UST 90 mg SC q12w and q8w groups, respectively). At WK200, 78.9% and 50.0% of patients in the UST 90 mg SC q12w and q8w groups, respectively, were in corticosteroid-free symptomatic remission. Full Mayo clinical remission/response rates at WK200 were 58.8%/94.1% and 75.0%/100.0% in UST 90 mg SC q12w and q8w groups, respectively (observed). Endoscopic healing rates at WK200 in the UST 90 mg SC q12w and q8w groups were 70.6% and 91.7%, respectively (observed). No unexpected safety concerns were observed.
Conclusions: Despite the small sample size which limited data interpretation, long-term UST 90 mg SC treatment is safe and efficacious in Asian patients with moderately to severely active UC demonstrating clinical benefit, consistent with the global population. In addition, Asian patients with relatively stable clinical condition may benefit from UST 90 mg SC when administered in a q12w treatment regimen given its sustained efficacy and low discontinuation rates.
Keywords: long-term extension, ulcerative colitis, ustekinumab
DOI: 10.15468/dl.zxpp5r
title: Occurrence Download

description: A dataset containing 1039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neoamphitrite affinis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1039 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039911-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t9wh8f
title: Occurrence Download

description: A dataset containing 23824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ferula"
 ]
}

 The dataset includes 23824 records from 300 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039910-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30829340
title: 7014 open science and 7016 dataset bibliometrics

description: Malaysian literature dataset from 2024 to 2025
DOI: 10.6084/m9.figshare.30829340.v2
title: 7014 open science and 7016 dataset bibliometric

description: Malaysian literature dataset from 2024 to 2025
DOI: 10.6084/m9.figshare.30829340.v3
title: 7014 open science and 7016 dataset bibliometrics

description: Malaysian literature dataset from 2024 to 2025
DOI: 10.15468/dl.xj8pmv
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Cinnamomum septentrionale"
 ]
}

 The dataset includes 158 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039912-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30829859
title: Cooper Caputo EAPS Final Project R Code

description: R code of CCD calculations following Boudreau et al. (2010) and plots
DOI: 10.6084/m9.figshare.30829859.v1
title: Cooper Caputo EAPS Final Project R Code

description: R code of CCD calculations following Boudreau et al. (2010) and plots
DOI: 10.17026/ar/wcam4u
title: PAN-00120101 - medieval badge, religious: saint (reference)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00120101&lt;/p&gt;
description: Modified: 2025-10-28T08:55:15+01:00
DOI: 10.6084/m9.figshare.30829832
title: Cooper Caputo EAPS Final Project Data

description: The year 2100 and paleoclimate data used in the calculation of CCD.
DOI: 10.6084/m9.figshare.30829832.v1
title: Cooper Caputo EAPS Final Project Data

description: The year 2100 and paleoclimate data used in the calculation of CCD.
DOI: 10.6084/m9.figshare.30829882
title: Supplementary Figures from Microbial communities of wild bees and comparative phylogenetics of key bacterial taxa across the bee tree of life

description: Sless_et_al_rspb.2025.1823_tables_ESM.xlsx
DOI: 10.6084/m9.figshare.30829882.v1
title: Supplementary Figures from Microbial communities of wild bees and comparative phylogenetics of key bacterial taxa across the bee tree of life

description: Sless_et_al_rspb.2025.1823_tables_ESM.xlsx
DOI: 10.17026/ar/ca8mum
title: PAN-00174674 - smooth ware jug type Hofh. 50

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00174674&lt;/p&gt;
description: Modified: 2025-10-21T15:23:58+02:00
DOI: 10.15468/dl.nsmxcc
title: Occurrence Download

description: A dataset containing 135664 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sulidae)",
 "Geometry POLYGON((-25.3605576 -34.8220024,63.4957581 -34.8220024,63.4957581 37.3404121,-25.3605576 37.3404121,-25.3605576 -34.8220024))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is one of (Africa)"
 ]
}

 The dataset includes 135664 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039881-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-2231627762
title: IBS BAG

description: The IBS BAG includes teams from IBS (Grenoble) and external groups from CEA-Cadarache (St Paul lez Durance) and IRBA (Brétigny-sur-Orge). We study the structure-function relationships of proteins with a focus on human health, biotechnology and methodology. Most of the projects are a continuation of the MX-2586 proposal and can be grouped under the following themes: host-pathogen interaction, new therapeutic targets, fundamental cellular mechanisms, membrane proteins, biotechnological applications and methodology. Some of these projects use integrative approaches (X-ray crystallography, cryo-EM, SAXS and NMR) together with other biophysical and biochemical studies and, more recently, the use of AI (AlphaFold) to fully understand the complexity of the biological macromolecular systems under study.
DOI: 10.15151/esrf-es-2231628049
title: PROTEINS RELATED TO PATHOGENESIS OF DISEASES, VIRAL PROTEINS, CELL DIVISION, SIGNALLING AND CHROMATIN PROCESSES

description: The outstanding research questions of our BAG (now expanded to 9 PIs) focus on proteins and their complexes involved in a variety of processes, ranging from cell homeostasis (from gene regulation to folding quality control, from energy metabolism to signal transduction) to communication and surface recognition (including trans-interactions between cell adhesion molecules, components of the extracellular matrix weaving, as well as antigen-antibody interactions for vaccine development and optimization). Key to several projects is the characterization of the mechanisms associated to enzyme function in various organisms, including bacteria, viruses, plants, animals and humans for downstream drug discovery campaigns. Emphasis is also given to research focusing on engineering protein and enzymes for future industrial applications, as well as to understand the impact of pathogenic mutations on protein structures, providing a genotype-to-molecular phenotype rationale to disease development.
DOI: 10.15151/esrf-es-2233749723
title: Austrian Crystallographic Diffraction Consortium

description: The Austrian Crystallographic Diffraction Consortium (ACDC) BAG aims at supporting several macromolecular structural biology groups across Austria (in total
20 research groups at 9 institutions in 4 cities). We employ mainly the technique of X-ray crystallography to characterize macromolecular biological complexes,
but also solution scattering approaches are frequently used to characterize dynamic assemblies. Approval of this BAG will be essential for researchers in all
our groups to carry out their structural studies on various health-related and basic research-oriented topics, which are targeted at characterizing large molecular
assemblies or proteins currently under-represented in the PDB, including membrane proteins. Corresponding high-resolution diffraction data are only obtainable
through the use of synchrotron radiation sources. Thus regular synchrotron access is highly desirable to maintain a competitive advantage in our individual
research fields
DOI: 10.15151/esrf-es-2298273035
title: Joint-Structrual Biology Group (JSBG) BAG proposal for ID29

description: The aim of the JSBG BAG proposal for ID29 beamline is to develop new methods for time-resolved serial crystallography experiments at 4th generation source and to study time dependent structural dynamics of biological macromolecules that are central research topics at the ESRF-EMBL-GR Group. Method developments include the study of radiation damage with µs pulsed X-ray beam at high flux densities and with partially polychromatic X-rays (1% and 0.4%), the implementation and development of various sample delivery methods - mixing in capillary, microfluidics, tape-drive and fixed targets. This further includes development of GPU-based indexing algorithms, data visualization in ICAT, and development of new data collection strategies for pump-probe SSX experiments integrating a nanosecond laser. Biological systems include the study of photoactivable proteins, photoswitchable ligand driven structural dynamics, enzymology, and multi-temp based protein dynamics.
DOI: 10.15151/esrf-es-2269220542
title: Coupling µXRD/µXRF/µXAS measurements for a detailed study of light rare earth element speciation in complex mining and industrial wastes.

description: Driven by the world's growing population and rapid economic growth, the pressure on natural resources is exponentially increasing. It is the case for critical metals, including Rare Earth Elements (REEs), that are the heart of a number of strategic technologies for the environmental transition. In the context of a circular economy, the exploitation of secondary resources such as complex mining and industrial wastes for the production of REEs seems to be a viable solution, but it requires a fine characterization of the materials, including metal speciation, in order to identify their potential and explore new metallurgical systems based on selectivity. We propose here to specifically investigate the microscale speciation of light REEs (La, Ce, Pr, Nd), in various mining and industrial waste materials, by coupling µXRD measurement (ID13) to µXRF/µXAS (ID21).
DOI: 10.17026/ar/wweb62
title: PAN-00118212 - coin/coin-related, sceatta porcupine

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00118212&lt;/p&gt;
description: Modified: 2025-10-21T08:46:27+02:00