cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1zcrjdfv9
title: Flower plantings support wild bee reproduction and may also mitigate pesticide exposure effects

description: 1. Sustainable agriculture relies on pollinators, and wild bees
 benefit yield of multiple crops. However, the combined exposure to
 pesticides and loss of flower resources, driven by agricultural
 intensification, contribute to declining diversity and abundance of many
 bee taxa. Flower plantings along the margins of agricultural fields offer
 diverse food resources not directly treated with pesticides. 2. To
 investigate the potential of flower plantings to mitigate bee pesticide
 exposure effects and support bee reproduction, we selected replicated
 sites in intensively farmed landscapes where half contained flower
 plantings. We assessed solitary bee Osmia lignaria and bumble bee Bombus
 vosnesenskii nesting and reproduction throughout the season in these
 landscapes. We also quantified local and landscape flower resources and
 used bee-collected pollen to determine forage resource use and pesticide
 exposure and risk. 3. Flower plantings, and their local flower resources,
 increased O. lignaria nesting probability. Bombus vosnesenskii
 reproduction was more strongly related to landscape than local flower
 resources. 4. Bees at sites with and without flower plantings experienced
 similar pesticide risk, and the local flowers, alongside flowers in the
 landscape, were sources of pesticide exposure particularly for O.
 lignaria. However, local flower resources mitigated negative pesticide
 effects on B. vosnesenskii reproduction. 5. Synthesis and applications.
 Bees in agricultural landscapes are threatened by pesticide exposure and
 loss of flower resources through agricultural intensification. Therefore,
 finding solutions to mitigate negative effects of pesticide use and flower
 deficiency is urgent. Our findings point towards flower plantings as a
 potential solution to support bee populations by mitigating pesticide
 exposure effects and providing key forage. Further investigation of the
 balance between forage benefits and added pesticide risk is needed to
 reveal contexts where net benefits occur.
DOI: 10.5061/dryad.jm63xsjdj
title: Data from: Affordable de novo generation of fish mitogenomes using amplification-free enrichment of mitochondrial DNA and deep sequencing of long fragments

description: Biomonitoring surveys from environmental DNA make use of metabarcoding
 tools to describe the community composition. These studies match their
 sequencing results against public genomic databases to identify the
 species. However, mitochondrial genomic reference data are yet incomplete,
 only a few genes may be available, or the suitability of existing sequence
 data is suboptimal for species-level resolution. Here we present a
 dedicated and cost-effective workflow with no DNA amplification for
 generating complete fish mitogenomes for the purpose of strengthening fish
 mitochondrial databases. Two different long-fragment sequencing approaches
 using Oxford Nanopore sequencing coupled with mitochondrial DNA enrichment
 were used. One where the enrichment is achieved by preferential isolation
 of mitochondria followed by DNA extraction and nuclear DNA depletion
 (‘mitoenrichment’).  A second enrichment approach takes advantage
 of the CRISPR-Cas9 targeted scission on previously dephosphorylated DNA
 (‘targeted mitosequencing’). The sequencing results varied between tissue,
 species, and integrity of the DNA. The mitoenrichment method yielded
 0.17-12.33 % of sequences on target and a mean coverage ranging from 74.9
 to 805-fold. The targeted mitosequencing experiment from native genomic
 DNA yielded 1.83-55 % of sequences on target and a 38 to 2123-fold mean
 coverage. This produced complete the mitogenome of species with
 homopolymeric regions, tandem repeats, and gene rearrangements. We
 demonstrate that deep sequencing of long fragments of native fish DNA is
 possible and can be achieved with low computational resources in a
 cost-effective manner, opening the discovery of mitogenomes of non-model
 or understudied fish taxa to a broad range of laboratories worldwide.
description: # Data from: Affordable de novo generation of fish mitogenomes using
 amplification-free enrichment of mitochondrial DNA and deep sequencing of
 long fragments
 [https://doi.org/10.5061/dryad.jm63xsjdj](https://doi.org/10.5061/dryad.jm63xsjdj) ## Description of the data and file structure Article: Affordable de novo generation of fish mitogenomes using amplification-free enrichment of mitochondrial DNA and deep sequencing of long fragments Authors: Ana Ramón-Laca, Ramón Gallego and Krista M. Nichols These are the raw data fast5 files that passed filter (Q&gt;9) from fish mitogenome sequencing MinION runs using R9.4 and R10.3 flow cells for the following species: * Oncorhynchus tshawytscha * Merluccius productus * Thaleichthys pacificus * Tarletonbeania crenularis * Diaphus theta * Stenobrachius leucopsarus The .fast5 files can be basecalled with Guppy or latest Dorado versions of https://github.com/nanoporetech
DOI: 10.57841/casdc.0007116
title: 建立高温超导材料应力-应变测试平台及应力下临界电流测试平台
DOI: 10.57707/fmi-b2share.tb2p7-ptx19
title: Merikanto et al: How Asian aerosols impact regional surface temperatures across the globe, submitted to ACP; NorESM1 and ECHAM6.1 data

description: Monthly gridded netcdf data from ECHAM6.1 and NorESM1 models using MacSP-v2 anthropogenic aerosol descriptions, including all nine anthropogenic aerosol plumes (files named "SP2005") or with South and East Asian aerosol plumes turned off (files named "NOASIA"). Both models used their intrinsic slab ocean configurations and background aerosols. Files contain last 60 years of climate model data from a 100-year equilibrium climate model run for current day climate. *T_DECOMPOSITION* -files contain calculated surface temperature responses associated with each energetic pathway (see original publication describing the method). The data has been regridded to the same resolution for both models, with 47 hybrid sigma pressure levels and, 144 latitudes and 96 longitudes (see mygrid -file). Variable names follow standard CMIP5 naming protocol in "RENAMED" files, which contain the energetic flux and temperature (+precipitation) data. "FORCING" files contain the top-of-atmosphere total (direct+indirect), direct and indirect forcing components due to removal of Asian aerosols, calculated online with double radiation calls during the climate runs.. Also, a python code "RY15" for the calculation of Taylor decomposition is included (the code works only for SW components, a more complete code for the full decomposition will be available shortly from Kalle Nordling!). Mantras with cdo commands for the calculation of LW, CONV and SURF components are provided in "mantras" file, which is meant to be used with separately available ECHAM radiative kernels (see mantras -file).   

Main reference where data will be published and described: 
Merikanto, J., Nordling, K., Räisänen, P., Räisänen, J., O'Donnell, D., Partanen, A.I., and Korhonen, K.: How Asian aerosols impact regional surface temperatures across the globe, submitted to Atmos. Chem. Phys., 2020.

Additional references describing methods and climate model runs: 
Nordling, K., Korhonen, H., Räisänen, P., Alper, M. E., Uotila, P., O'Donnell, D., and Merikanto, J.: Role of climate model dynamics in estimated climate responses to anthropogenic aerosols, Atmos. Chem. Phys., 19, 9969–9987, https://doi.org/10.5194/acp-19-9969-2019, 2019. 
Räisänen, J.: An energy balance perspective on regional CO2-induced temperature changes in CMIP5 models. Clim. Dyn. 48:3441–3454, 2017.
DOI: 10.57707/fmi-b2share.w4cew-mfb58
title: Merikanto et al: How Asian aerosols impact regional surface temperatures across the globe, submitted to ACP; NorESM1 and ECHAM6.1 data

description: Monthly gridded netcdf data from ECHAM6.1 and NorESM1 models using MacSP-v2 anthropogenic aerosol descriptions, including all nine anthropogenic aerosol plumes (files named "SP2005") or with South and East Asian aerosol plumes turned off (files named "NOASIA"). Both models used their intrinsic slab ocean configurations and background aerosols. Files contain last 60 years of climate model data from a 100-year equilibrium climate model run for current day climate. *T_DECOMPOSITION* -files contain calculated surface temperature responses associated with each energetic pathway (see original publication describing the method). The data has been regridded to the same resolution for both models, with 47 hybrid sigma pressure levels and, 144 latitudes and 96 longitudes (see mygrid -file). Variable names follow standard CMIP5 naming protocol in "RENAMED" files, which contain the energetic flux and temperature (+precipitation) data. "FORCING" files contain the top-of-atmosphere total (direct+indirect), direct and indirect forcing components due to removal of Asian aerosols, calculated online with double radiation calls during the climate runs.. Also, a python code "RY15" for the calculation of Taylor decomposition is included (the code works only for SW components, a more complete code for the full decomposition will be available shortly from Kalle Nordling!). Mantras with cdo commands for the calculation of LW, CONV and SURF components are provided in "mantras" file, which is meant to be used with separately available ECHAM radiative kernels (see mantras -file).   

Main reference where data will be published and described: 
Merikanto, J., Nordling, K., Räisänen, P., Räisänen, J., O'Donnell, D., Partanen, A.I., and Korhonen, K.: How Asian aerosols impact regional surface temperatures across the globe, submitted to Atmos. Chem. Phys., 2020.

Additional references describing methods and climate model runs: 
Nordling, K., Korhonen, H., Räisänen, P., Alper, M. E., Uotila, P., O'Donnell, D., and Merikanto, J.: Role of climate model dynamics in estimated climate responses to anthropogenic aerosols, Atmos. Chem. Phys., 19, 9969–9987, https://doi.org/10.5194/acp-19-9969-2019, 2019. 
Räisänen, J.: An energy balance perspective on regional CO2-induced temperature changes in CMIP5 models. Clim. Dyn. 48:3441–3454, 2017.
DOI: 10.5281/zenodo.18400693
title: How Do Chinese Firms Reconfigure under U.S. Export Controls? Strategic Pathways and Constraints
DOI: 10.5281/zenodo.18400692
title: How Do Chinese Firms Reconfigure under U.S. Export Controls? Strategic Pathways and Constraints
DOI: 10.5061/dryad.zgmsbccdt
title: Genetic admixture between Central European and Alpine wolf populations

description: The recovery and expansion of formerly isolated wolf populations in Europe
 raise questions about the nature of their interactions and future
 consequences for population viability and conservation. Will fragmented
 populations fuse or maintain a certain level of isolation with migration?
 Central Europe is suitable for obtaining empirical data in this field as
 it represents a “crossroad” with the potential for contact among several
 phylogeographic lineages. In this study, non-invasive genetic samples
 obtained during population monitoring in the Bohemian and Bavarian Forest
 (BBF) mountain ranges in the Czech Republic and Germany (Bohemian Massif)
 were analysed at different neutral markers including mitochondrial
 sequence, nuclear autosomal microsatellites and gonosomal sex markers.
 Resultant genetic profiles were compared with reference data to study
 population ancestry. Both cluster analyses of microsatellite genotypes and
 syntopic occurrence of haplotypes HW01 and HW22 showed genetic admixture
 between Central European and Alpine populations. This represents secondary
 contact and interbreeding of formerly allopatric populations with
 different phylogeographic histories and distant expansion centres in
 different biomes in the Baltic region versus the Apennine peninsula and
 Alps. Moreover, the study describes the founding event and genealogy of
 this admixed deme, inhabiting intermediate environmental conditions
 compared to parental forms, and emphasises the role of protected areas as
 stepping stones in the range recolonization process in endangered large
 mammals.
description: The studied deme was characterised using genetic markers. Through comparison with neighbouring populations, its origins and status of population admixture were assessed.
description: QGIS, Microsoft Excell, Rstudio, GeneAlEx
description: # Genetic admixture between Central European and Alpine wolf populations
 We present data on
 admixture between Central European and Alpine grey wolf populations. ##
 Description of the data and file structure This folder contains two files:
 1\) Table S1 contains sample information: ID, species determination,
 population assignment, country of origin, locality (area) of origin, GPS
 coordinates, date of collection, sample /observation type (camt = camera
 trap), sex determination (amelogenin), mitochondrial control region
 haplotype code (classification according to Pilot et al., 2010), identity
 (ID of samples from the same individual). The symbol "-" denotes
 empty values. 2\) MS Excel sheet "Microsatellite genotypes"
 contains allele scores of all studied individuals. Empty values are marked
 as "NA".
DOI: 10.5061/dryad.4f4qrfjfk
title: Phenotypic and marker data for statistical genetic analysis of Minnesota maize lines

description: Publicly available maize lines are a resource for studying quantitative
 genetic variation in plants. This dataset includes cluster or
 subpopulation information, phenotypic data, and single nucleotide
 polymorphism (SNP) data for 272 maize lines developed by the University of
 Minnesota, other universities, and seed companies. The lines were
 evaluated at multiple locations in Minnesota in 2011 and 2012 for
 different phenological, morphological, and kernel composition traits. The
 lines were genotyped for 56,110 SNP loci on the Maize SNP50 Beadchip
 (Illumina). Filtering for SNP data quality led to data for 28,626 SNP loci
 for the 272 maize lines. Population structure analysis showed that the
 maize lines clustered into five subpopulations (A321 or Minnesota 13, B73,
 Mo17, Oh43, and PH207 or Iodent) that represented most of the U.S. Corn
 Belt diversity (Schaefer and Bernardo 2013a, Crop Science 53:1529-1536).
 Genomewide association mapping revealed marker-trait associations for male
 flowering date, female flowering date, plant height, ear height, and
 kernel concentration for oil, protein, and starch (Schaefer and Bernardo
 2013b, Crop Science 53:2518-2529). The covariance between relatives is a
 tenet in quantitative genetics, but such classical theory has ignored any
 resemblance between individuals unrelated by pedigree. Analysis of this
 maize dataset showed that a covariance between nonrelatives in maize is
 not ubiquitous but it is sometimes rpesent for specific traits and for
 certain groups of unrelated individuals (Bernardo 2022, Heredity).
DOI: 10.5061/dryad.fn2z34txc
title: Readiness and determinants of Vietnam's general public to receive the COVID-19 vaccine: A national online cross-sectional study

description: Background: Despite vaccinations' efficacy in combating
 disease, people's readiness to get the COVID-19 vaccine is
 substantially varied. This study aimed to assess Vietnamese people's
 readiness, attitudes, and determinants for COVID-19 vaccination.
 Methods: A web-based cross-sectional online survey was conducted
 using a convenience sample approach. The Vietnamese population's
 readiness to receive COVID-19 vaccinations was assessed using the 7C (7Cs)
 of vaccination readiness scale. The scale was posted on Facebook and Zalo
 platforms. Descriptive statistics were calculated, and inferential
 analysis was applied to identify determinants predicting respondents'
 vaccine readiness. Results: Of the 1086 respondents invited to the study,
 1026 completed the questionnaire. The Vietnamese population demonstrated a
 moderate level of readiness for COVID-19 vaccination uptake, with an
 average 7Cs score of 103.25±15.13. A high level was underscored in
 complacency, constraints, collective responsibility, and compliance
 components, and a low level was reported in the calculation component. The
 Vietnamese population emphasized that the awareness of the significant
 adverse effects of COVID-19 vaccination was the primary factor influencing
 their readiness to get the vaccine (p &lt; 0.001). Worrying about the
 vaccine manufacturer and its origin was the second most crucial factor
 influencing their readiness to get the vaccine (p &lt; 0.001).
 Conclusions: Building confidence between people and the Vietnamese
 authorities is a high priority to enhance people's readiness to get
 the COVID-19 vaccine. The authorities should focus on dispelling
 disinformation posted on social media and promoting the usefulness of
 COVID-19 vaccines.
DOI: 10.5061/dryad.6t1g1jx22
title: Supporting data for: Investigating conifer water use patterns across temporal and topographic gradients in the southern Sierra Nevada

description: Access to a reliable water source plays an integral role in tree function
 and survival. Water is a critical component of tree physiological
 processes, with trees that experience water stress exhibiting lower
 stomatal conductance (Irvine et al. 1998, Panek and Goldstein 1999),
 reduced photosynthetic and growth rates (Grieu et al. 1988, DeLucia and
 Heckathorn 1989, Adams and Kolb 2005, Truettner et al. 2018), and
 increased risk of hydraulic failure (Brodribb and Cochrad 2009, Anderegg
 and Anderegg 2013). As droughts increase in frequency, severity, and
 duration globally (Allen et al. 2015), access to a reliable water source
 such as deep soil water or water stored in fractured bedrock (i.e,
 hydraulic refugia) may dictate how trees respond to periods of water
 stress (McDowell et al. 2019). For example, studies in the southwestern
 United States have indicated that trees with access to deeper, more
 reliable water sources experience lower rates of mortality during drought
 periods (Grossiord et al. 2017, McDowell et al. 2019). While the effect of
 water availability on tree function and survival is well studied, whether
 the primary water source used by trees varies through time and across
 topographic gradients remains poorly understood. Understanding variability
 in tree water use patterns may provide insight to how forests will respond
 to increasing water stress under climate change.
description: Tree core data were collected and individual growth years
 extracted and analyzed for oxygen isotopes.
DOI: 10.5061/dryad.pnvx0k6qh
title: Nasopharyngeal swabs vs. saliva sampling for SARS-CoV-2 detection: A cross-sectional survey of acceptability for caregivers and children after experiencing both methods

description: Background: Saliva sampling is a promising alternative to nasopharyngeal
 swabs for SARS-CoV-2 testing, but acceptability data is lacking. We
 characterize the acceptability of saliva sampling and nasopharyngeal swabs
 for primary decision makers and their children after experiencing both
 testing modalities. Results: 48 participants and 48 primary decision
 makers completed the survey. Nasopharyngeal  swab acceptability
 differed between scenarios, ranging 79% [95%CI: 66, 88] to 100% [95%CI:
 95, 100]); saliva  sampling acceptability was similar across
 scenarios, ranging 92% [95%CI: 82, 97]) to  98% [95%CI: 89, 99].
 58% of youth described significant pain with nasopharyngeal 
 swabbing, versus none with saliva sampling. 90% of children prefer saliva
 sampling. 66% of primary decision makers would prefer nasopharyngeal
 swabbing if it were 10% more sensitive. Conclusion: Though youth prefer
 saliva sampling over nasopharyngeal swabs, primary decision makers present
 for testing remain highly accepting of both. Acceptance of nasopharyngeal
 swabs, however, varies with the testing indication and is influenced by
 perceived test accuracy. Understanding factors that influence sampling
 acceptance will inform more successful testing strategies.
description: We administered a cross-sectional survey to participants aged
 6-to-17 years and their primary decision makers at an Ottawa community
 COVID-19 testing centre in March 2021. Included were participants meeting
 local guidelines for testing. Excluded were those identified prior to
 participation as having inability to complete the consent, sampling, or
 survey process. Acceptability in multiple hypothetical scenarios was rated
 using a 5-point Likert scale. Pain was measured using the Faces Pain Scale
 - Revised (FPS-R). Preference for testing was assessed with direct binary
 questions.
DOI: 10.5061/dryad.3j9kd51ms
title: High within-clutch repeatability of eggshell phenotype in Barn Swallows (Hirundo rustica erythrogaster) despite less maculated last-laid eggs

description: Ecological and life history variation and both interspecific and
 intraspecific brood parasitism contribute to diversity in egg phenotype
 within the same species. In this study, Barn Swallows (Hirundo rustica
 erythrogaster) laid eggs with high intraclutch repeatability in egg size,
 shape, and maculation. Despite this high intraclutch repeatability,
 last-laid eggs had consistently less of the eggshell covered in spots and
 fewer spots than earlier-laid eggs in the clutch. We examined sources of
 interclutch and intraclutch variation using both direct measurements and
 custom-software (SpotEgg, NaturePatternMatch) that provide detailed
 information on egg characteristics, especially maculation measures. In
 addition to our main findings, maculation on different sides of the egg
 was highly repeatable; however, only shape, proportion of the eggshell
 maculated, and average spot size were repeatable between first and
 replacement clutches. Low intraclutch variation in maculation could allow
 females to recognize their clutch and this may be adaptive for colonial
 nesting species, such as the Barn Swallow. Characterizing intraspecific
 variation in egg size, shape, and maculation is the first step in
 understanding whether intraclutch variation is low enough - and
 interclutch variation high enough – such that eggs could serve as identity
 signals.
DOI: 10.15468/dl.wdgy3s
title: Occurrence Download

description: A dataset containing 1113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation, Occurrence evidence, Living Specimen)",
 "Country is Kenya",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Acinonyx jubatus"
 ]
}

 The dataset includes 1113 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003139-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.