cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22059125.v1
title: ForestClim – Bioclimatic variables for microclimate temperatures of European forests

description: Combining more than 1,200 time series of <em>in situ</em> near-surface forest temperatures with topographical, biological and macroclimatic variables in a machine learning model, we predicted the monthly offset for minimum, mean and maximum temperature between sub-canopy temperature at 15 cm above the surface and free-air temperature over the period 2000-2020 at a spatial resolution of 25 x 25 m² across Europe. These offsets were used to calculate bioclimatic variables for microclimate temperatures of European forests. When using any of these layers, please cite: Haesen et al. (2021). ForestTemp – Sub-canopy microclimate temperatures of European forests. Global Change Biology, <em>27</em>(23), 6307–6319. https://doi.org/10.1111/gcb.15892 Haesen et al. (2023). ForestClim – Bioclimatic variables for microclimate temperatures of European forests. Global Change Biology. https://doi.org/10.1111/gcb.16678 We have followed the generally accepted definitions: ForestClim_01 = mean annual temperature ForestClim_02 = mean diurnal range ForestClim_03 = isothermality ForestClim_04 = temperature seasonality ForestClim_05 = maximum temperature of the warmest month ForestClim_06 = minimum temperature of the coldest month ForestClim_07 = temperature annual range ForestClim_08 = mean temperature of the wettest quarter ForestClim_09 = mean temperature of the driest quarter ForestClim_10 = mean temperature of the warmest quarter ForestClim_11 = mean temperature of the coldest quarter To mask pixels by the proportion of extrapolation, the file 'extrapolation.tif' can be used. All layers are projected in epsg:3035.
DOI: 10.6084/m9.figshare.24073785.v1
title: NAEP student survey and assessment state-level aggregated data on remote learning conditions and outcomes

description: Description of Key Variables and Data Sources<b>Reading Achievement:</b> Percentages of grade 4 and grade 8 students whose NAEP 2015 reading achievement is at or above basic achievement level.<b>Math Achievement: </b>Percentages of grade 4 and grade 8 students whose NAEP 2015 math achievement is at or above the basic achievement level.<b>Student Enrollment in Instructional Modes</b>: Percentages of grade 4 and grade 8 students enrolled in different instructional delivery modes during Jan- May, 2021 (i.e., in-person, hybrid, or remote learning mode each). Data source: NAEP school survey 2021<b>Remote Learning Environment and Engagement</b>: The following set of NAEP student survey items were used to measure remote learning environment and engagement in ELA or math during the COVID-19 pandemic period. Data source: NAEP student survey 2022.Student’s experience of remote learning during last year (% yes)Student’s perceived difficulty of remote learning (% a lot or somewhat more difficult)Students’ self-efficacy to find online resources for remote learning (% probably or definitely can)Students’ self-efficacy to ask for help in remote learning (% probably or definitely can)Teacher’s availability to help with remote learning (% everyday or once/twice a week)Students’ access to digital/computing devices at home (% all the time or some of the time)Students’ access to high-speed Internet at home (% all the time)
DOI: 10.6084/m9.figshare.25529632.v1
title: Input files for scUTRquant-figures repository

description: OverviewThis dataset contains input and intermediate objects that are part of the minimum dataset required for verifying the analysis reported in Fansler et al., <i>Nat Commun., </i>2024. These objects are used in the following repositories to generate figures in the manuscript:https://github.com/Mayrlab/scUTRquant-figureshttps://github.com/Mayrlab/hcl-analysishttps://github.com/Mayrlab/mca-analysishttps://github.com/Mayrlab/gwps-sqThe repositories contain additional information on the derivation of the objects.DescriptionsThe folders contain the following data:<b>aparent2</b> - scores from analyzing human Microwell-seq cleavage sites<b>bam</b> - genomic alignments of single-cell data subsetted to the 3' cleavage site of Vamp2 in mouse<b>bed</b> - cleavage site annotations from hcl-utrome and mca-utrome; reprocessed counts from polyASite 2.0<b>celltype_score</b> - tabulation of number of cell types in which a cleavage site is detected<b>clusters</b> - APA regulator cluster information derived from Perturb-seq data<b>conservation</b> - phastCons scores for cleavage site neighborhoods<b>counts</b> - a note for where to get data from 10X Genomics<b>dge</b> - results from differential gene expression testing<b>dtu</b> - results from differential transcript usage testing (uses scUTRboot)<b>dwui</b> - results from differential WUI testing in Perturb-seq<b>gtf</b> - annotations of human and mouse UTRome<b>halflife</b> - isoform-resolved mRNA halflives from K562 SLAM-seq data<b>kallisto</b> - counts and kallisto indices for the UTRomes<b>lui</b> - longest 3'UTR isoform usage point estimates and cell counts in large survey of scRNA-seq datasets<b>seq</b> - extracted sequences used as input to APARENT2<b>tpm</b> - TPMs and counts per cell (CPC) for mouse and human summarized to cell type; also TPM tables for summarized Perturb-seq data<b>wui</b> - Weighted UTR Index quantifications for all perturbations in K562 and RPE1 essential Perturb-seq screens<br>
DOI: 10.6084/m9.figshare.28113017.v1
title: <b>Global Mapping of Child Labor</b>

description: Using child labor data from the Multiple Indicator Cluster Surveys (MICS) database and Demographic and Health Surveys (DHS) database from 2001 to 2020, combined with environmental, socio-economic, and demographic data in the study area, and used statistical methods to model. Introducing machine learning to interpret nonlinear effects significantly improves the predictive accuracy of the model, resulting in the creation of a grid map of child labor distribution with a resolution of 5 × 5 kilometers.
DOI: 10.6084/m9.figshare.5127907.v1
title: Supplementary Material for: Temporal Changes in Alcohol-Related Morbidity and Mortality in Germany

description: <b><i>Aims:</i></b> Trends in morbidity and mortality, fully or partially attributable to alcohol, for adults aged 18-64 were assessed for Germany. <b><i>Methods:</i></b> The underestimation of population exposure was corrected by triangulating survey data with per capita consumption. Alcohol-attributable fractions by sex and two age groups were estimated for major disease categories causally linked to alcohol. Absolute numbers, population rates and proportions relative to all hospitalizations and deaths were calculated. <b><i>Results:</i></b> Trends of 100% alcohol-attributable morbidity and mortality over thirteen and eighteen years, respectively, show an increase in rates of hospitalizations and a decrease in mortality rates. Comparisons of alcohol-attributable morbidity including diseases partially caused by alcohol revealed an increase in hospitalization rates between 2006 and 2012. The proportion of alcohol-attributable hospitalizations remained constant. Rates of alcohol-attributable mortality and the proportion among all deaths decreased. <b><i>Conclusions:</i></b> The increasing trend in mortality due to alcohol until the mid-1990s has reversed. The constant proportion of all hospitalizations that were attributable to alcohol indicates that factors such as improved treatment and easier health care access may have influenced the general increase in all-cause morbidity. To further reduce alcohol-related mortality, efforts in reducing consumption and increasing treatment utilization are needed.
DOI: 10.6084/m9.figshare.8868833.v1
title: voxelGeneCoexpression_E13pt5.mat

description: The dataset is the basis of our analysis of correlated gene expression (CGE) in the developing mouse brain.
DOI: 10.17605/osf.io/pyznx
title: Smartphones and State Anxiety

description: The present study explores how smartphone intrusiveness and excessive use affects emerging adults’ state (or temporary) anxiety. Participants were divided into three groups, varied by the degree of intrusiveness of their smartphone devices during a period of forbidden smartphone use: absent (non-intrusive), silenced (mildly intrusive), and notifications (intrusive). Given the well-established relationship between smartphone addiction and anxiety (Matar Boumosleh & Jaalouk, 2017; Hawi & Samaha, 2017; Kim et al., 2019; Oraison et al., 2020; Selcuk & Ayhan, 2020), it was hypothesized that smartphone intrusiveness would increase state anxiety when denied use of their smartphone during an unspecified waiting period, particularly if they received notifications during that time. Replicating Cheever and colleagues (2014), it was also expected that excessive daily smartphone use would be associated with high levels of state anxiety. Surprisingly, results revealed that state anxiety scores decreased after the delay of gratification task, regardless of smartphone intrusiveness. Anecdotal evidence suggests this reduction in anxiety is a result of self-permission to temporarily ignore technological interference. The negative impact of smartphones on anxiety was observed in that participants reporting excessive daily smartphone use (6 or more hours) had significantly higher state anxiety than participants reporting more moderate smartphone use. Together, these findings suggest that a temporary reprieve from smartphone use may have an alleviating effect on state anxiety, but that prodigious daily smartphone use negatively influences even transient levels of anxiety. This conclusion adds to the body of knowledge surrounding smartphones’ aggravating effect on mental health.
DOI: 10.6084/m9.figshare.16438281.v1
title: TM-Senti

description: This is a large-scale, multilingual and longitudinal Twitter sentiment dataset sampled through distant supervision from the Twitter Stream Grab archive (https://archive.org/details/twitterstream). It covers the time period between January 2013 and June 2020 for 7 languages:- Arabic (ar)<br>- German (de)<br>- English (en)- Spanish (es)- French (fr)- Italian (it)- Chinese (zh)<br>With the files in this repository, we provide tweet IDs that can be used to rehydrate the datasets by using the files available from the Twitter Stream Grab.<br><br>Files are formatted as TSV files, with the following columns:<br>date \t tweetid \t sentiment \t evidence<br>where:- date is the day in which the tweet was posted.- tweetid is the ID of the tweet- sentiment is either pos or neg- evidence is the set of emojis or emoticons used to determine if the tweet was positive or negative.<br><br>More details about the dataset can be found in the following paper (please cite the paper if you use the dataset):<br>TBA<br>
DOI: 10.6084/m9.figshare.21707888.v3
title: dipolar cycloaddition dataset

description: This dataset consists of 5271 reaction profiles computed in a high-throughput manner at B3LYP-D3(BJ)/def2-TZVP//B3LYP-D3(BJ)/def2-SVP level of theory with the help of autodE and Gaussian 16. Reaction IDs and SMILES, activation energies (G_act; in kcal/mol) and reaction energies (G_r; in kcal/mol) for each computed reaction profile are provided in CSV format (full_dataset.csv). XYZ-files for each reactant (both the original and stereo-constrained versions), TS and product species as well as a CSV file containing computed electronic energies and thermal corrections are available in a compressed archive file, full_dataset_profiles.tar.gz. <br> The files have been organized per reaction profile, identified through the reaction ID. Within each directory, reactant XYZ-files are of the form r#####.xyz, product XYZ-files are of the form p#####.xyz, and transition state XYZ-files are of the form TS_#####.xyz. If the reactant dipole conformer had to be corrected to enforce stereochemical compatibility, the latter XYZ-files are included under to form of r#####_alt.xyz. The energies for all of these species are summarized per directory in energies.csv. <br> Additionally, all the benchmarking data are made available in the benchmarking_data.tar.gz directory
DOI: 10.6084/m9.figshare.26300887.v1
title: S-wave velocity model

description: S-wave velocity model beneath the Changbai volcano.
DOI: 10.6084/m9.figshare.28926602.v1
title: M-PLOYNOMIAL.py

description: M-PLOYNOMIAL<br>
DOI: 10.17632/7yb7s9769c
title: NKG2A and HLA-E define an alternative immune checkpoint axis in bladder cancer

description: Single-cell RNA sequencing data used in the following article:

NKG2A and HLA-E define an alternative immune checkpoint axis in bladder cancer
https://www.cell.com/cancer-cell/fulltext/S1535-6108(22)00369-5


Authors:
Bérengère Salomé, John P. Sfakianos, Daniel Ranti, Jorge Daza, Christine Bieber, Andrew Charap, Christian Hammer, Romain Banchereau, Adam M. Farkas, Dan Fu Ruan, Sudeh Izadmehr, Daniel Geanon, Geoffrey Kelly, Ronaldo M. de Real, Brian Lee, Kristin G. Beaumont, Sanjana Shroff, Yuan Shuo A. Wang, Ying-chih Wang, Tin Htwe Thin, Monica Garcia-Barros, Everardo Hegewisch-Solloa, Emily M. Mace, Li Wang, Timothy  O’Donnell, Diego Chowell, Ruben Fernandez-Rodriguez, Mihaela Skobe, Nicole Taylor, Seunghee Kim-Schulze, Robert P. Sebra, Doug Palmer, Eleanor Clancy-Thompson, Scott Hammond, Alice O. Kamphorst, Karl-Johan Malmberg,  Emanuela Marcenaro, Pedro Romero, Rachel Brody, Mathias Viard, Yuko Yuki, Maureen Martin, Mary Carrington, Reza Mehrazin, Peter Wiklund, Ira Mellman, Sanjeev Mariathasan, Jun Zhu, Matthew D. Galsky, Nina Bhardwaj*, Amir Horowitz*

Summary
PD-1/PD-L1-blockade immunotherapies have limited efficacy in the treatment of bladder cancer. Here,
we show that NKG2A associates with improved survival and responsiveness to PD-L1 blockade
immunotherapy in bladder tumors that have high abundance of CD8+ T cells. In bladder tumors, NKG2A
is acquired on CD8+ T cells later than PD-1 as well as other well-established immune checkpoints.
NKG2A+ PD-1+ CD8+ T cells diverge from classically defined exhausted T cells through their ability to
react to HLA class I-deficient tumors using TCR-independent innate-like mechanisms. HLA-ABC
expression by bladder tumors is progressively diminished as disease progresses, framing the importance
of targeting TCR-independent anti-tumor functions. Notably, NKG2A+ CD8+ T cells are inhibited when
HLA-E is expressed by tumors and partly restored upon NKG2A blockade in an HLA-E-dependent
manner. Overall, our study provides a framework for subsequent clinical trials combining NKG2A
blockade with other T cell-targeted immunotherapies, where tumors express higher levels of HLA-E.
DOI: 10.17632/s9y7fh7nbx
title: Supplementary material 1

description: Criteria were defined for the assessment of morphological characteristics. Presence of dermatitis was assessed based on the location on the skin surface using size cut-offs for the lesions.
DOI: 10.6084/m9.figshare.11379933.v1
title: sensitivity_analysis

description: Outputs from statistical analysis of USHCN and MODIS data, including sensitivity of primary production to precipitation and SPEI (mixed-model fixed and random effects), and uncertainty of sensitivity model parameters (RMSE). The ecoregion risk table summarizes findings on sensitivity and climate trends for each NEON domain.<br>
DOI: 10.6084/m9.figshare.14776344.v1
title: Psychological and clinical-epidemiological profile of poisoning in Nepal: an institutional experience

description: This data is about the psychological and clinical-epidemiological profile of patients visiting Scheer Memorial Adventist Hospital after poisoning. Retrospective record-based data among poisoning patients of Scheer Memorial Adventist Hospital in Nepal from 1st January 2018 to 31st December 2020 were collected in pre-designed questionnaire.
DOI: 10.6084/m9.figshare.22203688.v1
title: Raw Sequences and Supplemental data for Do local fungal and bacterial communities shape bat microbiomes? A study of cave-roosting bats in El Malpais National Monument, New Mexico, USA

description: Raw 16S rDNA and fungal sequences produced from Illumnia sequecning and supplemental figures <br> <br> <br> <br>
DOI: 10.6084/m9.figshare.26910811.v4
title: Estimating the effect of increased contraceptive use on women's empowerment: using longitudinal PMA data, fixed effects modeling and fictive cohorts

description: Historically, family planning (FP) programs in low-income countries have been valued for their benefits to child and maternal health. Today, there is a focus on integrating contraceptive access into women's rights. However, measuring the impact of FP on women’s empowerment remains challenging due to a lack of experiments or longitudinal survey data. This paper aims to model the causal impact of increased contraceptive use on women's empowerment. Using longitudinal PMA data collected in 2019, 2020 and 2021 in Burkina Faso and fixed effects modeling, we estimate the effect of increases in contraceptive duration (number of months using modern or traditional methods over the past year) among women in union aged 20 to 44 on their labor force participation (LFP) and household decision-making power, controlling for age and fertility intentions. Results show that increases in contraceptive use attributable to improved access (controlling for fertility intentions) have a small yet positive and significative effect on women’s labor force participation; they are not linked to women’s decision-making power. A fictive cohort approach helps illustrate the magnitude of the effects. A woman, experiencing at every age the LFP rates observed for women in union between 20-44 in 2019-2021 in Burkina Faso PMA data, would work 11.95 years out of 25. Assuming an average increase in contraceptive duration of six months linked to improved access to contraceptive services in this population at every age, women’s number of years worked would increase from 11.95 to 12.48 (+4.4%). Several improvements in data collection are needed to strengthen the model. First, placing the waves two years apart or sustaining data collection for more years would be beneficial. Second, calendar data on occupation and fertility intentions and on the various events susceptible to modify them are needed to better estimate the causal impact of FP programs on women’s empowerment.<br>
DOI: 10.6084/m9.figshare.27643437.v1
title: Source Data

description: Source Data for <b>High-performance energy storage</b><b> </b><b>in</b><b> </b><b>antiferroelectrics by frustrating</b><b> </b><b>antipolar ordering</b>
DOI: 10.6084/m9.figshare.28724381.v1
title: <b>Habitat Preferences of the Re-introduced European Water Vole, </b><b><i>Arvicola amphibius, </i></b><b>at Trelusback</b><b><i> </i></b><b>Foundation, Cornwall.</b>

description: To collect activity data, floating wooden rafts were ladled and anchored in a variety of different habitats. each week cuttings of juncus and reeds were counted alongside the number of droppings present on each of the floating rafts. these rafts were brushed clean each week to prevent buildup.For habitat data, a wooden 1m ruler and a 5x5 quadrat alongside a leveller and compass was used. 17 different habitat characteristics were measured at each of these raft locations, as seen in the provided spreadsheet. Each measurement was taken three times with a mean calculated and added into the spreadsheet.Data was collected complied with the relevant ethical regulations and were conducted under University of Exeter Ethical Committee approval.
DOI: 10.17632/b5k86zmg6x
title: Data for: The Impact of Innovation Contest Briefs on the Quality of Solvers and Solutions

description: This data is formed using web crawler, and is about the detail of almost 4,000 innovation contests.
DOI: 10.17632/mf78pvcrkk
title: LDB1 Western Blot

description: Western blot validating auxin-inducible degron system for LDB1. Western blot for LDB1 (GAPDH as loading control) in LDB1-AID G1E-ER4 cells. 3 samples (parental G1E-ER4 cells, LDB1-AID clone 1, LDB1-AID clone 2); 2 treatment conditions (untreated, 4hr auxin treated). Hypothesis - auxin treatment will deplete LDB1 protein levels in LDB1-AID clones, but not parental cells. Sample order from left to right: parental untreated, parental 4hr auxin, LDB1-AID clone 1 untreated, LDB1-AID clone 1 4hr auxin, LDB1-AID clone 2 untreated, LDB1-AID clone 2 4hr auxin.
DOI: 10.17632/pvxxnhrvbv
title: Magnetic parameters for ODP Hole 885A

description: This data set contains the magnetic parameters for ODP Hole 885A since the 8.0 Ma in the paper “Asian dust fertilization on magnetotactic bacterial activity in the North Pacific Ocean since 8.0 Ma”.
DOI: 10.23645/epacomptox.5491516.v8
title: Archived Distributed Structure-Searchable Toxicity (DSSTox) Data

description: Description: The most updated EPA DSSTox data files are available https://doi.org/10.23645/epacomptox.5588566 . EPA’s Distributed Structure-Searchable Toxicity (DSSTox) database contains curated chemical substances mapped to data including chemical identifiers (i.e., chemical synonyms, systematic names, CAS Registry Numbers and others) and, where appropriate, chemical structure representations. The goal for DSSTox is to accurately represent chemical substances, their structures and identifiers, as well as relevant chemical lists which are important to the environmental research and regulatory community.<br>Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.4121/uuid:b1d3819e-d5e2-4461-acf9-43577468b2dc
title: Ranking data of 61 groups to calculate group proximity

description: Participants' rankings of four alternatives during a citizens' summit. The participants ranked the alternatives twice (ranking1 and ranking 2). In each file the rankings of a group of participants is collected, with a maximum of 10 participants per group. In total we collected the rankings of 61 groups.
DOI: 10.6084/m9.figshare.12847151.v1
title: Thermal Plasticity of Tapinoma magnum

description: The data accompanies the manuscript "Increased acclimation ability accompanies a thermal niche shift of a recent invasion" by Bujan et al. 2020 in Journal of Animal Ecology.
DOI: 10.6084/m9.figshare.23278331.v1
title: <b>Site-specific drug release of monomethyl fumarate to treat oxidative stress disorders</b>

description: Treatment of diseases of oxidative stress through activation of the antioxidant nuclear factor E2-related factor 2 (Nrf2) is limited by systemic side effects. We chemically functionalised the Nrf2 activator monomethyl fumarate (MMF) to require Baeyer-Villiger oxidation for release of the active drug at sites of oxidative stress. Our new prodrug reversed chronic pain in mice with reduced side effects, and has application in numerous diseases and disorders of oxidative stress.
DOI: 10.6084/m9.figshare.5426716.v1
title: Imperial College Healthcare NHS Trust

description: Response to our Freedom of Information Act request received from this NHS Trust.
DOI: 10.17632/p27jn973rp
title: The Impact of Capital Structure on Financial Performance of Russian Public Oil and Gas Companies

description: Panel data
DOI: 10.17632/tc5h2hfxhr
title: Capacitated Waste Collection Routing

description: This includes the MATLAB file (fixed_bins.mat) containing all bin coordinates and waste levelss used in the experiments. Algorithm implementations are available from the corresponding author upon request.
DOI: 10.6084/m9.figshare.12579149.v4
title: Potentilla_anserina_chromosome.fa

description: By using ~100X coverage of clean Hi-C reads, contigs were organized into 14 chromosomes.