cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cyevjn
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atheresthes stomias (Jordan & Gilbert, 1880)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 108 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038251-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640526_d1.v1
title: Additional file 2: of Resolving Cypriniformes relationships using an anchored enrichment approach

description: Table S2. Summary of the sequence data collected and assemblies that resulted. (XLSX 91Â kb)
DOI: 10.6084/m9.figshare.c.3640721_d2.v1
title: Additional file 2: of Development and preliminary validation of a leadership competency instrument for existing and emerging allied health professional leaders

description: AHEAD Checklist and Resource Guides. (XLS 3787 kb)
DOI: 10.6084/m9.figshare.c.3640727_d1.v1
title: MOESM1 of 
                     Aspergillus nidulans protein kinase A plays an important role in cellulase production

description: Additional file 1: Table S1. List of CAZymes.
DOI: 10.6084/m9.figshare.c.3640916_d2.v1
title: Additional file 1: of Gonadal transcriptomics elucidate patterns of adaptive evolution within marine rockfishes (Sebastes)

description: EST assembly statististics for S. goodei. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.c.3640919_d1.v1
title: Additional file 1: of Non-coplanar volumetric-modulated arc therapy (VMAT) for craniopharyngiomas reduces radiation doses to the bilateral hippocampus: a planning study comparing dynamic conformal arc therapy, coplanar VMAT, and non-coplanar VMAT

description: The dataset supporting our findings. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3640925_d1.v1
title: Additional file 1: Table S1. of Combined physiological, transcriptome, and cis-regulatory element analyses indicate that key aspects of ripening, metabolism, and transcriptional program in grapes (Vitis vinifera L.) are differentially modulated accordingly to fruit size

description: Summary of RNA sequencing analysis metrics. RNA sequencing were carried in skins of small and large berries at four berry developmental stages namely 47 (before ripening, 4.9 °Brix), 74 (early ripening, 17.5 °Brix), 103 (ripening, 22.4 °Brix), and 121 (late ripening, 25.3 °Brix) days after anthesis (DAA). Table S2. Transcript abundance of the DE genes, reported as log2 (FPKM + 1) values, for each individual biological replicate (R1, R2, R3) in each treatment (small and large berry) at 47, 74, 103, and 121 days after anthesis. Table S3. Summary of differentially expressed genes between small and large berries at four berry developmental stages. All differentially expressed genes (Adj. P-value &lt;0.05) and detailed description of the 12×V1 gene ID, log2 fold change values (small vs large), differential expression calls across four developmental stages, average log2 (FPKM + 1) values (3 replicates) of small and large  berries together and individually, k-means assigned cluster (based on response and developmental stage), functional annotations based on Grimplet et al. [37] (including transcription factors), and MapMan pipeline. Table S4. Summary of PLACE- and PBM-curated cis-regulatory elements (CRE) analysis of k-means assigned clusters and selected group of genes. All information on the number of promoters with the specified CRE (match_in_sample), the number of genes within each group, number of promoters in the genome containing the specified CRE (match_in_genome), P-value and FDR of enriched CRE (FDR
DOI: 10.6084/m9.figshare.c.3640928_d1.v1
title: Additional file 1: of Bovine mastitis: prevalence, risk factors and isolation of Staphylococcus aureus in dairy herds at Hawassa milk shed, South Ethiopia

description: Raw data from bovine mastitis study at Hawassa milk shed, South Ethiopia. The additional file contains the entire herd and animal-level raw data collected from 529 lactating cows at Hawassa milk shed, South Ethiopia and on which the conclusion of the manuscript rely. The data will be freely available at the journalâ  s webpage to any scientist wishing to use them for noncommercial purposes. (XLSX 86Â kb)
DOI: 10.6084/m9.figshare.c.3640940_d1.v1
title: Additional file 2: Table S1. of RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells

description: Top RISC-released/loaded genes and top ribosome-loaded/released genes during the ESâ  ELA transition. (XLS 260 kb)
DOI: 10.6084/m9.figshare.c.3640940_d2.v1
title: Additional file 3: Table S2. of RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells

description: Gene Ontology terms enriched in mRNA which are released from RISC during the ES–ELA transition; Gene Ontology terms enriched in mRNA which are loaded on ribosomes during the ES–ELA transition; Families of chromatin remodelers showing the name and mRNA NCBI accession ID of their members. (XLS 73 kb)
DOI: 10.6084/m9.figshare.c.3640940_d5.v1
title: Additional file 6: Table S4. of RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells

description: mRNAs that are differentially expressed during the ESâ  ELA transition as evaluated by microarray analysis. (XLS 148 kb)
DOI: 10.6084/m9.figshare.c.3640940_d4.v1
title: Additional file 4: Table S3. of RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells

description: Results of proteomic relative quantifiction of nuclear extracts from ES and ELA cells; Genes, unrelated to chromatin remodelers, with similar regulation of mRNAs in Fig.Â 4bâ  d. (XLS 24 kb)
DOI: 10.6084/m9.figshare.c.3640940_d6.v1
title: Additional file 5: Table S5. of RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells

description: List of miRNAs downregulated during the ES–ELA transition; miRanda scores predicted for mRNAs in Fig. 4i–k. (XLS 31 kb)
DOI: 10.15468/dl.sj9zhg
title: Occurrence Download

description: A dataset containing 5927 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atherina presbyter Cuvier, 1829",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 5927 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038252-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640952_d1.v1
title: Additional file 4: Table S3. of Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

description: Taxonomic classification of non-human nanopore reads identified using MetaPORE. (XLSX 117 kb)
DOI: 10.6084/m9.figshare.c.3640952_d2.v1
title: Additional file 2: Table S2. of Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

description: MetaPORE performance according to system configuration and alignment mode. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3640952_d3.v1
title: Additional file 1: Table S1. of Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

description: Optimization of word count for MegaBLAST alignment to the NT reference database. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3640961_d3.v1
title: Additional file 1: Table S1. of Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome

description: Mango transcriptome annotation. (XLSX 16205 kb)
DOI: 10.6084/m9.figshare.c.3640961_d1.v1
title: Additional file 4: Table S4. of Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome

description: List of accessions in the Israeli germplasm collection and metadata. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3640961_d2.v1
title: Additional file 3: Table S3. of Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome

description: Mango SNP list. (XLSX 14669 kb)
DOI: 10.6084/m9.figshare.c.3641120_d2.v1
title: Additional file 9 of A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies

description: RtPCR data. This table shows the RtPCR data for a subset of the genes that are identified in our analysis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3641120_d3.v1
title: Additional file 8 of A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies

description: Pathways identified in different sizes of tumors compared to normal myometrium. In the table, the enriched pathways are grouped and color coded according to different sizes of fibroids. The last column shows the negative of the logarithm of the BH adjusted p-value, computed by IPA. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3641120_d4.v1
title: Additional file 7 of A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies

description: Differentially expressed probe sets in different sizes of tumors compared to normal myometrium. Significant probe sets are grouped and color coded according to different sizes of fibroids. The last column shows the BH-adjusted p-value for step 1 of the methodology. The columns under "Dunnett Adjusted P-values" show the p-values for step 2 of the methodology. (XLSX 1863 kb)
DOI: 10.6084/m9.figshare.c.3641138_d1.v1
title: MOESM4 of Tissue-specific expression of histone H3 variants diversified after species separation

description: Additional file 4: Predicted CDS of rat histone H3 variants, contains Table S3 for the rat H3 sequence prediction results as an Excel file, which is the same format as Table S2.
DOI: 10.6084/m9.figshare.c.3641138_d2.v1
title: MOESM5 of Tissue-specific expression of histone H3 variants diversified after species separation

description: Additional file 5: Similarity of amino acid and DNA sequence, contains Table S4, which shows amino acid and DNA sequence similarities between mouse H3 variant proteins/genes in Excel file.
DOI: 10.6084/m9.figshare.c.3641138_d4.v1
title: MOESM1 of Tissue-specific expression of histone H3 variants diversified after species separation

description: Additional file 1: Predicted CDS of mouse H3 variants, contains Table S1, which lists the coding DNA sequence (CDS) locus information of the predicted mouse H3 variant genes in an Excel file.
DOI: 10.6084/m9.figshare.c.3641138_d5.v1
title: MOESM3 of Tissue-specific expression of histone H3 variants diversified after species separation

description: Additional file 3: Predicted CDS of human histone H3/H4 variants, contains Table S2, which lists the CDS locus information of the predicted human histone H3 and H4 variants in an Excel file.
DOI: 10.6084/m9.figshare.c.3641399_d1.v1
title: MOESM7 of Genome-wide methylation analysis demonstrates that 5-aza-2-deoxycytidine treatment does not cause random DNA demethylation in fragile X syndrome cells

description: Additional file 7: Table S4. List of DMRs and their chromosome position in the comparison between WT1 and WT2 versus FXS1.
DOI: 10.6084/m9.figshare.c.3641414_d2.v1
title: Additional file 2: of The role of breast-feeding in infant immune system: a systems perspective on the intestinal microbiome

description: GO enrichment tables for human genes involved in the system. (CSV 79 kb)
DOI: 10.6084/m9.figshare.c.3641414_d4.v1
title: Additional file 1: of The role of breast-feeding in infant immune system: a systems perspective on the intestinal microbiome

description: Supporting supplementary figures for data analysis. (PDF 2,238 kb)
DOI: 10.6084/m9.figshare.c.3641414_d3.v1
title: Additional file 4: of The role of breast-feeding in infant immune system: a systems perspective on the intestinal microbiome

description: Microbial abundance tables. (CSV 14 kb)
DOI: 10.6084/m9.figshare.c.3641432_d2.v1
title: Additional file 4: of Why is malaria associated with poverty? Findings from a cohort study in rural Uganda

description: Data files. (ZIP 15Â kb)
DOI: 10.15468/dl.4t43aw
title: Occurrence Download

description: A dataset containing 4138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atherinops affinis (Ayres, 1860)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 4138 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038253-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641666_d1.v1
title: Additional file 3: of The Mediator complex subunits MED25/PFT1 and MED8 are required for transcriptional responses to changes in cell wall arabinose composition and glucose treatment in Arabidopsis thaliana

description: ANOVA tables of gene expression in dark grown seedlings of Col, hsr8-1 , hsr8-1pft1-2 and pft1-2 . (XLS 68Â kb)
DOI: 10.6084/m9.figshare.c.3641666_d4.v1
title: Additional file 2: of The Mediator complex subunits MED25/PFT1 and MED8 are required for transcriptional responses to changes in cell wall arabinose composition and glucose treatment in Arabidopsis thaliana

description: ANOVA tables of glucose- responsive gene expression in Col and pft1-2 . (XLS 1314Â kb)
DOI: 10.6084/m9.figshare.c.3641678_d2.v1
title: Additional file 1: Table S1. of The role of structural parameters in DNA cyclization

description: Structural parameters for the straight homogenous DNA model. Table S2: Structural parameters for the curved DNA model. Table S3: Structural parameters for SET1. Table S4: Structural parameters for SET2. Table S5: Structural parameters for SET3. Table S6: Structural parameters for SET4. Table S7: Structural parameters for SET5. Table S8: Structural parameters for SET6. Table S9: Structural parameters for SET7. Table S10: Sequences with experimentally measured and computational calculated J factors. (XLSX 127 kb)
DOI: 10.6084/m9.figshare.c.3641684_d1.v1
title: MOESM1 of T cell deficiency in spinal cord injury: altered locomotor recovery and whole-genome transcriptional analysis

description: Additional file 1: Table S1. Complete list of identified genes, expression values, and significance testing.
DOI: 10.6084/m9.figshare.c.3641879_d14.v1
title: Additional file 4: Table S2. of Phenotypic convergence in bacterial adaptive evolution to ethanol stress

description: (CSV 7Â kb)Intracellular metabolite concentrations in the parent and tolerant strains.
DOI: 10.6084/m9.figshare.c.3641900_d1.v1
title: MOESM3 of Whole-genome sequencing and comparative genomic analysis of Escherichia coli O91 strains isolated from symptomatic and asymptomatic human carriers

description: Additional file 3. Phage-associated regions in NCCP15736 and NCCP15737.
DOI: 10.6084/m9.figshare.c.3641900_d2.v1
title: MOESM2 of Whole-genome sequencing and comparative genomic analysis of Escherichia coli O91 strains isolated from symptomatic and asymptomatic human carriers

description: Additional file 2. Virulence genes of NCCP15736 and NCCP15737.
DOI: 10.6084/m9.figshare.c.3641900_d3.v1
title: MOESM1 of Whole-genome sequencing and comparative genomic analysis of Escherichia coli O91 strains isolated from symptomatic and asymptomatic human carriers

description: Additional file 1. Annotated genes of NCCP15736 and NCCP15737 using the RAST server.
DOI: 10.6084/m9.figshare.c.3641912_d1.v1
title: MOESM3 of Presenilin 1 transgene addition to amyloid precursor protein overexpressing transgenic rats increases amyloid beta 42 levels and results in loss of memory retention

description: Additional file 3: TableÂ 3. contains dataset for Barnes maze (see Fig.Â 4). The table includes acquisition day 1, 2 and 3 latency and errors and their averages, retention latency and errors and reversal days 1, 2 and 3 latency and errors and their averages.
DOI: 10.15468/dl.47h87k
title: Occurrence Download

description: A dataset containing 673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aulorhynchus flavidus Gill, 1861",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 673 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038254-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642350_d2.v1
title: Additional file 4: Table S2. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: List of Elymus nutans transcriptome annotations. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3642350_d3.v1
title: Additional file 11: Table S6. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Specifically expressed genes in DX and GN at 24Â h under cold stress compared control (0Â h). (XLSX 61 kb)
DOI: 10.6084/m9.figshare.c.3642350_d1.v1
title: Additional file 14: Table S9. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: The top 10 KEGG metabolic pathways enriched in DEGs. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3642347_d2.v1
title: Additional file 2: of Comparison of the pharmacokinetics between L-BPA and L-FBPA using the same administration dose and protocol: a validation study for the theranostic approach using [18F]-L-FBPA positron emission tomography in boron neutron capture therapy

description: Experimental datasets. (XLSX 62Â kb)
DOI: 10.6084/m9.figshare.c.3642350_d4.v1
title: Additional file 27: Table S20. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: List of hub genes in in response to cold treatment of DX and GN genotypes. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3642350_d7.v1
title: Additional file 28: Table S21. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: List of primer sequences of randomly selected unigenes used for qRT-PCR analysis. (XLSX 480 kb)
DOI: 10.6084/m9.figshare.c.3642350_d5.v1
title: Additional file 13: Table S8. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Common expression DEGs in response to cold stress in DX and GN genotypes. Persistently up-regulated genes is highlighted in red and bold. (XLSX 85 kb)
DOI: 10.6084/m9.figshare.c.3642350_d6.v1
title: Additional file 24: Table S18. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to ABA metabolism and signaling in response to cold treatment of DX and GN genotypes. (XLSX 350 kb)
DOI: 10.6084/m9.figshare.c.3642350_d8.v1
title: Additional file 10: Table S5. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Specifically expressed genes in DX and GN at 3Â h of cold stress compared with control (0Â h). (XLSX 388 kb)
DOI: 10.6084/m9.figshare.c.3642350_d10.v1
title: Additional file 8: Table S3. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Summary of annotation and expression of 5436 and 4323 differentially expressed genes (DEGs) in DX and GN under cold stress. (XLSX 1993 kb)
DOI: 10.6084/m9.figshare.c.3642350_d11.v1
title: Additional file 23: Table S17. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to photosynthesis in response to cold treatment of DX and GN genotypes. (XLSX 352 kb)
DOI: 10.6084/m9.figshare.c.3642350_d13.v1
title: Additional file 25: Table S19. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to cold-responsive protein in response to cold treatment of DX and GN genotypes. (XLSX 483 kb)
DOI: 10.6084/m9.figshare.c.3642350_d15.v1
title: Additional file 22: Table S16. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to secondary metabolism in response to cold treatment of DX and GN genotypes. (XLSX 415 kb)
DOI: 10.6084/m9.figshare.c.3642350_d16.v1
title: Additional file 21: Table S15. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to carbohydrate metabolism in response to cold treatment of DX and GN genotypes. (XLSX 412 kb)
DOI: 10.6084/m9.figshare.c.3642350_d17.v1
title: Additional file 16: Table S13. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to lipid metabolism in response to cold treatment of DX and GN genotypes. (XLSX 415 kb)
DOI: 10.6084/m9.figshare.c.3642350_d21.v1
title: Additional file 12: Table S7. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Specifically expressed genes in DX and GN at 5 d under cold stress compared with control (0Â h). (XLSX 139 kb)
DOI: 10.6084/m9.figshare.c.3642350_d22.v1
title: Additional file 17: Table S12. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to signaling transduction during the early phases of cold stress. (XLSX 47 kb)
DOI: 10.15468/dl.yb53ns
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Avocettina infans (Günther, 1878)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 44 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038255-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642578_d2.v1
title: Additional file 4: Table S3. of Genome-wide characterization and expression analysis of MYB transcription factors in Gossypium hirsutum

description: Location of MYB genes in the upland cotton genome. The positive (+) and negative (â  ) symbols following each gene represent forward and reverse orientations on the chromosome, respectively. (XLSX 45 kb)