cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1184/r1/7999364
title: 3D Kinect Total Body Database for Back Stretches

description: The data was collected by a Kinect V2 as a set of X, Y, Z coordinates at 60 fps during 6 different yoga inspired back stretches. <br>There are 541 files in the dataset, each containing position, velocity for 25 body joints. These joints include: Head, Neck, SpineShoulder, SpineMid, SpineBase, ShoulderRight, ShoulderLeft, HipRight, HipLeft, ElbowRight, WristRight, HandRight, HandTipRight, ThumbRight, ElbowLeft, WristLeft, HandLeft, HandTipLeft, ThumbLeft, KneeRight, AnkleRight, FootRight, KneeLeft, AnkleLeft, FootLeft. <br>The program used to record this data was adapted from Thomas Sanchez Langeling’s skeleton recording code. The file was set to record data for each body part as a separate file, repeated for each exercise. Each bodypart for a specific exercise is stored in a distinct folder. These folders are named with the following convention: subjNumber_stretchName_trialNumber <br>The subjNumber ranged from 0 – 8. The stretchName was one of the following: Mermaid, Seated, Sumo, Towel, Wall, Y. The trialNumber ranged from 0 – 9 and represented the repetition number. <br>These coordinates were chosen to have an origin centered at the subject’s upper chest. <br>The data was standardized to the following conditions: 1) Kinect placed at the height of 2 ft and 3 in 2) Subject consistently positioned 6.5 ft away from the camera with their chests facing the camera 3) Each participant completed 10 repetitions of each stretch before continuing on <br>Data was collected from the following population: * Adults ages 18-21 * Females: 4 * Males: 5 <br>The following types of pre-processing occurred at the time of data collection. Velocity Data: Calculated using a discrete derivative equation with a spacing of 5 frames chosen to reduce sensitivity of the velocity function v[n]=(x[n]-x[n-5])/5 Occurs for all body parts and all axes individually <br><br>Related manuscript: Capella, B., Subrmanian, D., Klatzky, R., & Siewiorek, D. Action Pose Recognition from 3D Camera Data Using Inter-frame and Inter-joint Dependencies. Preprint at link in references.
DOI: 10.1184/r1/7999364.v2
title: 3D Kinect Total Body Database for Back Stretches

description: The data was collected by a Kinect V2 as a set of X, Y, Z coordinates at 60 fps during 6 different yoga inspired back stretches. <br>There are 541 files in the dataset, each containing position, velocity for 25 body joints. These joints include: Head, Neck, SpineShoulder, SpineMid, SpineBase, ShoulderRight, ShoulderLeft, HipRight, HipLeft, ElbowRight, WristRight, HandRight, HandTipRight, ThumbRight, ElbowLeft, WristLeft, HandLeft, HandTipLeft, ThumbLeft, KneeRight, AnkleRight, FootRight, KneeLeft, AnkleLeft, FootLeft. <br>The program used to record this data was adapted from Thomas Sanchez Langeling’s skeleton recording code. The file was set to record data for each body part as a separate file, repeated for each exercise. Each bodypart for a specific exercise is stored in a distinct folder. These folders are named with the following convention: subjNumber_stretchName_trialNumber <br>The subjNumber ranged from 0 – 8. The stretchName was one of the following: Mermaid, Seated, Sumo, Towel, Wall, Y. The trialNumber ranged from 0 – 9 and represented the repetition number. <br>These coordinates were chosen to have an origin centered at the subject’s upper chest. <br>The data was standardized to the following conditions: 1) Kinect placed at the height of 2 ft and 3 in 2) Subject consistently positioned 6.5 ft away from the camera with their chests facing the camera 3) Each participant completed 10 repetitions of each stretch before continuing on <br>Data was collected from the following population: * Adults ages 18-21 * Females: 4 * Males: 5 <br>The following types of pre-processing occurred at the time of data collection. Velocity Data: Calculated using a discrete derivative equation with a spacing of 5 frames chosen to reduce sensitivity of the velocity function v[n]=(x[n]-x[n-5])/5 Occurs for all body parts and all axes individually <br><br>Related manuscript: Capella, B., Subrmanian, D., Klatzky, R., & Siewiorek, D. Action Pose Recognition from 3D Camera Data Using Inter-frame and Inter-joint Dependencies. Preprint at link in references.
DOI: 10.6084/m9.figshare.7999382.v1
title: we all have secrets

description: don't peek
DOI: 10.1184/r1/7999364.v1
title: 3D Kinect Total Body Database for Back Stretches

description: The data was collected by a Kinect V2 as a set of X, Y, Z coordinates at 60 fps during 6 different yoga inspired back stretches. <br>There are 541 files in the dataset, each containing position, velocity for 25 body joints. These joints include: Head, Neck, SpineShoulder, SpineMid, SpineBase, ShoulderRight, ShoulderLeft, HipRight, HipLeft, ElbowRight, WristRight, HandRight, HandTipRight, ThumbRight, ElbowLeft, WristLeft, HandLeft, HandTipLeft, ThumbLeft, KneeRight, AnkleRight, FootRight, KneeLeft, AnkleLeft, FootLeft. <br>The program used to record this data was adapted from Thomas Sanchez Langeling’s skeleton recording code. The file was set to record data for each body part as a separate file, repeated for each exercise. Each bodypart for a specific exercise is stored in a distinct folder. These folders are named with the following convention: subjNumber_stretchName_trialNumber <br>The subjNumber ranged from 0 – 8. The stretchName was one of the following: Mermaid, Seated, Sumo, Towel, Wall, Y. The trialNumber ranged from 0 – 9 and represented the repetition number. <br>These coordinates were chosen to have an origin centered at the subject’s upper chest. <br>The data was standardized to the following conditions: 1) Kinect placed at the height of 2 ft and 3 in 2) Subject consistently positioned 6.5 ft away from the camera with their chests facing the camera 3) Each participant completed 10 repetitions of each stretch before continuing on <br>Data was collected from the following population: * Adults ages 18-21 * Females: 4 * Males: 5 <br>The following types of pre-processing occurred at the time of data collection. Velocity Data: Calculated using a discrete derivative equation with a spacing of 5 frames chosen to reduce sensitivity of the velocity function v[n]=(x[n]-x[n-5])/5 Occurs for all body parts and all axes individually <br><br>Related manuscript: Capella, B., Subrmanian, D., Klatzky, R., & Siewiorek, D. Action Pose Recognition from 3D Camera Data Using Inter-frame and Inter-joint Dependencies. Preprint at link in references.
DOI: 10.1184/r1/7999319
title: A set of images rated for largeness, openness, ruggedness, distance

description: This is a stimulus and dataset that supports:Klatzky, R. L., Thompson, W. B., Stefanucci, J. K., Gill, D., & McGee, D. K. (2017). The perceptual basis of vast space. Psychonomic Bulletin & Review. DOI 10.3758/s13423-017-1265-0 <br>Abstract:“Vast” is a word often applied to environmental terrain perceived to have large spatial extent. This judgment is made even at viewing distances where traditional metric depth cues are not useful. This paper explores the perceptual basis of vast experience, including reliability and visual precursors. Experiment 1 demonstrated strong agreement in ratings of the spatial extent of 2D scene images by participants in two countries under very different viewing conditions. Image categories labeled “vast” often exemplified scene attributes of ruggedness and openness (Oliva & Torralba, 2001). Experiment 2 quantitatively assessed whether these properties predict vastness. High vastness ratings were associated with highly open, or moderately open but rugged, scenes. Experiment 3 provided evidence, consistent with theory, that metric distance perception does not directly mediate the observed vastness ratings. The question remains as to how people perceive vast space when information about environmental scale is unavailable from metric depth cues or associated scene properties. We consider possible answers, including contribution from strong cues to relative depth. <br>
DOI: 10.1184/r1/7999319.v1
title: A set of images rated for largeness, openness, ruggedness, distance

description: This is a stimulus and dataset that supports:Klatzky, R. L., Thompson, W. B., Stefanucci, J. K., Gill, D., & McGee, D. K. (2017). The perceptual basis of vast space. Psychonomic Bulletin & Review. DOI 10.3758/s13423-017-1265-0 <br>Abstract:“Vast” is a word often applied to environmental terrain perceived to have large spatial extent. This judgment is made even at viewing distances where traditional metric depth cues are not useful. This paper explores the perceptual basis of vast experience, including reliability and visual precursors. Experiment 1 demonstrated strong agreement in ratings of the spatial extent of 2D scene images by participants in two countries under very different viewing conditions. Image categories labeled “vast” often exemplified scene attributes of ruggedness and openness (Oliva & Torralba, 2001). Experiment 2 quantitatively assessed whether these properties predict vastness. High vastness ratings were associated with highly open, or moderately open but rugged, scenes. Experiment 3 provided evidence, consistent with theory, that metric distance perception does not directly mediate the observed vastness ratings. The question remains as to how people perceive vast space when information about environmental scale is unavailable from metric depth cues or associated scene properties. We consider possible answers, including contribution from strong cues to relative depth. <br>
DOI: 10.6084/m9.figshare.7999190
title: Gut microbiome gene catalog cluster file, 50% amino acid identity

description: Gene clusters for non-redundant microbial gene catalog (clustered at 50% sequence identity) from 2,182 gut microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. Each cluster is marked in the left column with a "&gt;," and there is one cluster per consensus genes in the gene catalog files. The ID's in the right column are the genes within a cluster, with the consensus gene marked with an asterisk. Percent identity to the consensus gene is also described per gene ID.
DOI: 10.6084/m9.figshare.7999331.v1
title: A Generalized Gaussian Process Model for Computer Experiments with Binary Time Series

description: Non-Gaussian observations such as binary responses are common in some computer experiments. Motivated by the analysis of a class of cell adhesion experiments, we introduce a generalized Gaussian process model for binary responses, which shares some common features with standard GP models. In addition, the proposed model incorporates a flexible mean function that can capture different types of time series structures. Asymptotic properties of the estimators are derived, and an optimal predictor as well as its predictive distribution are constructed. Their performance is examined via two simulation studies. The methodology is applied to study computer simulations for cell adhesion experiments. The fitted model reveals important biological information in repeated cell bindings, which is not directly observable in lab experiments.
DOI: 10.6084/m9.figshare.7998830
title: Supplementary Material for: Sudden Gains in Cognitive Behavioural Therapy and Focal Psychodynamic Therapy for Anorexia Nervosa: Findings from the ANTOP Study

description: Medicine
DOI: 10.6084/m9.figshare.7998797
title: Long-Term Changes in Submacular Choroidal Thickness after Intravitreal Ranibizumab Therapy for Neovascular Age-Related Macular Degeneration: 14-Mo Follow-Up

description: <b>Purpose</b>: To study (i) the long-term effects of intravitreal ranibizumab treatment on changes in submacular choroidal thickness and (ii) the relationship between any resulting changes in choroidal thickness and visual outcomes following such treatment in patients with neovascular age-related macular degeneration (n-AMD). <b>Methods</b>: Reviewed were medical records of 30 consecutive, treatment-naïve, patients with unilateral n-AMD (n = 30 eyes) and unaffected fellow eyes (n = 26 eyes) (controls). Monthly injections of 0.5 mg ranibizumab were administered until stabilization of n-AMD, with additional injections as needed over the following 14-mo. Choroidal thickness was determined using enhanced-depth imaging–optical coherence tomography (EDI–OCT) before and after initiation of ranibizumab therapy. Choroidal thickness measurements were generated via manual segmentation. <b>Results</b>: The mean age of patients was 71.9 ± 7.4 (56–83) years; the mean best-corrected visual acuity (BCVA) of affected eyes improved from 51.1 to 59.4 letters (<i>p</i> &lt; 0.001); and the mean number of injections was 9.16 ± 1.75. Subfoveal choroidal thickness decreased from 208.3 ± 73.7 μm at baseline to 185.3 ± 70.1 μm at mo-14 (<i>p</i> &lt; 0.001), with significant (<i>p</i> &lt; 0.001) decreases at all measured time points. Choroidal thickness also tended to decline in fellow eyes but was only statistically significant nasally 1,000 μm (<i>p =</i>0.04). Mean changes in choroidal thickness did not correlate with BCVA at mo-14 (<i>p</i> = 0.76). Disciform scars and geographic atrophy (<i>p =</i> 0.017), and BCVA (<i>p</i> &lt; 001) at baseline were predictive of visual outcome. Age (<i>p =</i> 0.001), reticular drusen (<i>p =</i> 0.004), and size of choroidal neovascularized area (<i>p</i> = 0.042) were predictive of decreases in choroidal thickness. <b>Conclusions</b>: Submacular choroidal thickness appeared to decrease significantly in eyes with n-AMD over a 14-mo period of ranibizumab treatment. No corresponding decrease in choroidal thickness occurred in fellow eyes.
DOI: 10.6084/m9.figshare.7998758
title: Vision Board - Manifest Your Desires

description: The <b>Vision Board</b> that helps me visualize my future and stay encouraged to concentrate on my goals.
DOI: 10.6084/m9.figshare.7998797.v1
title: Long-Term Changes in Submacular Choroidal Thickness after Intravitreal Ranibizumab Therapy for Neovascular Age-Related Macular Degeneration: 14-Mo Follow-Up

description: <b>Purpose</b>: To study (i) the long-term effects of intravitreal ranibizumab treatment on changes in submacular choroidal thickness and (ii) the relationship between any resulting changes in choroidal thickness and visual outcomes following such treatment in patients with neovascular age-related macular degeneration (n-AMD). <b>Methods</b>: Reviewed were medical records of 30 consecutive, treatment-naïve, patients with unilateral n-AMD (n = 30 eyes) and unaffected fellow eyes (n = 26 eyes) (controls). Monthly injections of 0.5 mg ranibizumab were administered until stabilization of n-AMD, with additional injections as needed over the following 14-mo. Choroidal thickness was determined using enhanced-depth imaging–optical coherence tomography (EDI–OCT) before and after initiation of ranibizumab therapy. Choroidal thickness measurements were generated via manual segmentation. <b>Results</b>: The mean age of patients was 71.9 ± 7.4 (56–83) years; the mean best-corrected visual acuity (BCVA) of affected eyes improved from 51.1 to 59.4 letters (<i>p</i> &lt; 0.001); and the mean number of injections was 9.16 ± 1.75. Subfoveal choroidal thickness decreased from 208.3 ± 73.7 μm at baseline to 185.3 ± 70.1 μm at mo-14 (<i>p</i> &lt; 0.001), with significant (<i>p</i> &lt; 0.001) decreases at all measured time points. Choroidal thickness also tended to decline in fellow eyes but was only statistically significant nasally 1,000 μm (<i>p =</i>0.04). Mean changes in choroidal thickness did not correlate with BCVA at mo-14 (<i>p</i> = 0.76). Disciform scars and geographic atrophy (<i>p =</i> 0.017), and BCVA (<i>p</i> &lt; 001) at baseline were predictive of visual outcome. Age (<i>p =</i> 0.001), reticular drusen (<i>p =</i> 0.004), and size of choroidal neovascularized area (<i>p</i> = 0.042) were predictive of decreases in choroidal thickness. <b>Conclusions</b>: Submacular choroidal thickness appeared to decrease significantly in eyes with n-AMD over a 14-mo period of ranibizumab treatment. No corresponding decrease in choroidal thickness occurred in fellow eyes.
DOI: 10.6084/m9.figshare.7998758.v1
title: Vision Board - Manifest Your Desires

description: The <b>Vision Board</b> that helps me visualize my future and stay encouraged to concentrate on my goals.
DOI: 10.6084/m9.figshare.12872372
title: Additional file of Improved RIDIT statistic approach provides more intuitive and informative interpretation of EQ-5D data

description: Additional file of Improved RIDIT statistic approach provides more intuitive and informative interpretation of EQ-5D data
DOI: 10.6084/m9.figshare.12872375
title: Additional file 2 of Improved RIDIT statistic approach provides more intuitive and informative interpretation of EQ-5D data

description: Additional file 2.
DOI: 10.6084/m9.figshare.12872372.v1
title: Additional file of Improved RIDIT statistic approach provides more intuitive and informative interpretation of EQ-5D data

description: Additional file of Improved RIDIT statistic approach provides more intuitive and informative interpretation of EQ-5D data
DOI: 10.6084/m9.figshare.12872375.v1
title: Additional file 2 of Improved RIDIT statistic approach provides more intuitive and informative interpretation of EQ-5D data

description: Additional file 2.
DOI: 10.6084/m9.figshare.11945487
title: Additional file 2 of Home-based rehabilitation using a soft robotic hand glove device leads to improvement in hand function in people with chronic spinal cord injury:a pilot study

description: Additional file 2 A video of a participant completing a task involving manipulation of a book from Toronto Rehabilitation Institute hand function test. The participant was instructed to pick up the book at the spin and manipulate it; turning the palm up and down while still holding it. The video shows the performance on this task for the participant during the baseline assessment (Initial), after six weeks of using the device (Week 6), after 12 weeks of using the device (Week 12) and during the follow up assessment session (Week 18). The task was more difficult and was performed less smoothly at initial assessment session compared with the other assessment sessions.
DOI: 10.6084/m9.figshare.11945487.v2
title: Additional file 2 of Home-based rehabilitation using a soft robotic hand glove device leads to improvement in hand function in people with chronic spinal cord injury:a pilot study

description: Additional file 2 A video of a participant completing a task involving manipulation of a book from Toronto Rehabilitation Institute hand function test. The participant was instructed to pick up the book at the spin and manipulate it; turning the palm up and down while still holding it. The video shows the performance on this task for the participant during the baseline assessment (Initial), after six weeks of using the device (Week 6), after 12 weeks of using the device (Week 12) and during the follow up assessment session (Week 18). The task was more difficult and was performed less smoothly at initial assessment session compared with the other assessment sessions.
DOI: 10.6084/m9.figshare.11945499
title: Additional file 3 of Home-based rehabilitation using a soft robotic hand glove device leads to improvement in hand function in people with chronic spinal cord injury:a pilot study

description: Additional file 3 A video of a participant completing a task involving manipulation of a card from Toronto Rehabilitation Institute hand function test. The participant was instructed to pick up the card and manipulate it; turning the palm up and down while still holding it. An example of this task in activities of daily living is the use of a bank/credit card. The video shows the performance on this task for the participant during the baseline assessment (Initial), after six weeks of using the device (Week 6), after 12 weeks of using the device (Week 12) and during the follow up assessment session (Week 18). The task was more difficult and was performed less smoothly at initial assessment session compared with the other assessment sessions.
DOI: 10.6084/m9.figshare.11945499.v2
title: Additional file 3 of Home-based rehabilitation using a soft robotic hand glove device leads to improvement in hand function in people with chronic spinal cord injury:a pilot study

description: Additional file 3 A video of a participant completing a task involving manipulation of a card from Toronto Rehabilitation Institute hand function test. The participant was instructed to pick up the card and manipulate it; turning the palm up and down while still holding it. An example of this task in activities of daily living is the use of a bank/credit card. The video shows the performance on this task for the participant during the baseline assessment (Initial), after six weeks of using the device (Week 6), after 12 weeks of using the device (Week 12) and during the follow up assessment session (Week 18). The task was more difficult and was performed less smoothly at initial assessment session compared with the other assessment sessions.
DOI: 10.6084/m9.figshare.7998641.v1
title: Gene clusters sequences Nitrospira pangenome

description: Gene clusters sequences from the pangenomics analysis included in the manuscript: "Genomic profiling of <i>Nitrospira</i> species reveals ecological success of comammox <i>Nitrospira</i>"
DOI: 10.6084/m9.figshare.7998563
title: Raw and processed data used to generate viral titre and host gene expression figures.

description: Raw and processed data for quantifying viral titre and host cell gene expression as described in the associated paper.<br>TCID<sub>50</sub> -50% tissue culture infectious dose<br>qPCR- quantitative pcr
DOI: 10.6084/m9.figshare.7998563.v1
title: Raw and processed data used to generate viral titre and host gene expression figures.

description: Raw and processed data for quantifying viral titre and host cell gene expression as described in the associated paper.<br>TCID<sub>50</sub> -50% tissue culture infectious dose<br>qPCR- quantitative pcr
DOI: 10.6084/m9.figshare.7998521
title: Original gels used for making figures

description: Original unedited full gels used for making figures in the associated paper. Files are titled as per the Figure panel.<br>IB- immunoblot- western blotIVT- in vitro translationToeprint- reverse transcription inhibition assay<br><br><br>
DOI: 10.6084/m9.figshare.7998521.v1
title: Original gels used for making figures

description: Original unedited full gels used for making figures in the associated paper. Files are titled as per the Figure panel.<br>IB- immunoblot- western blotIVT- in vitro translationToeprint- reverse transcription inhibition assay<br><br><br>
DOI: 10.6084/m9.figshare.7998491
title: Cannabinoid receptor expression in estrogen-dependent and estrogen-independent endometrial cancer

description: The lack of good diagnostic/prognostic biomarkers and the often late presentation of endometrial cancer (EC) hinders the amelioration of the morbidity and mortality rates associated with this primarily estrogen-driven disease, a disease that is becoming more prevalent in the population. Previous studies on the expression of the classical cannabinoid receptors, CB1 and CB2, suggest these could provide good diagnostic/prognostic biomarkers for EC but those observations have been contradictory. In this study, we sought to resolve the inconsistency of CB1 and CB2 expression levels in different EC studies. To that end, we used qRT-PCR and immunohistochemistry (IHC) for CB1 and CB2 in endometrial biopsies from women with or without EC and found that transcript levels for both CB1 and CB2 were significantly decreased by 90 and 80%, respectively in EC. These observations were supported by histomorphometric studies where CB1 and CB2 staining intensity was decreased in all types of EC. These data suggest that the loss of both types of CB receptors is potentially involved in the development of or progression of EC and that CB1 and CB2 receptor expression could serve as useful histological markers and therapeutic targets in the treatment of or prevention of EC.