cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3742331_d1.v1
title: Additional file 1: of Higher neonatal growth rate and body condition score at 7Â months are predictive factors of obesity in adult female Beagle dogs

description: Hormonal values by group and by age. Values are expressed as mean (standard deviation). (CSV 3Â kb)
DOI: 10.6084/m9.figshare.c.3742331_d1
title: Additional file 1: of Higher neonatal growth rate and body condition score at 7Â months are predictive factors of obesity in adult female Beagle dogs

description: Hormonal values by group and by age. Values are expressed as mean (standard deviation). (CSV 3Â kb)
DOI: 10.6084/m9.figshare.c.3742334_d1.v1
title: Additional file 1: Table S1. of Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies

description: Species abundance in mock staggered community. Table S2. DNA concentration in mock staggered community. Table S3. Tax ID and Accession Numbers for all organisms in mock or synthetic communities. Table S4. MetaQUAST output from mock balanced community. Table S5. metaQUAST output from mock staggered community. (XLSX 84Â kb)
DOI: 10.6084/m9.figshare.c.3742331_d2.v1
title: Additional file 2: of Higher neonatal growth rate and body condition score at 7 months are predictive factors of obesity in adult female Beagle dogs

description: Averaged AUCs at 7 months of age during a 150 min postprandial kinetic. Values are expressed as mean (standard deviation). Their comparison was assessed by a linear regression model analysis. I:G correspond to the ratio between plasma insulin and glucose. Letters a and b represent significant differences (p
DOI: 10.6084/m9.figshare.c.3742334_d1
title: Additional file 1: Table S1. of Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies

description: Species abundance in mock staggered community. Table S2. DNA concentration in mock staggered community. Table S3. Tax ID and Accession Numbers for all organisms in mock or synthetic communities. Table S4. MetaQUAST output from mock balanced community. Table S5. metaQUAST output from mock staggered community. (XLSX 84Â kb)
DOI: 10.15468/dl.j44w3u
title: Occurrence Download

description: A dataset containing 546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelon auratus (Risso, 1810)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 546 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038444-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3742352_d2.v1
title: Additional file 2: Table S1. of Transcriptome profiling reveals expression signatures of cranial neural crest cells arising from different axial levels

description: Total expression data from r1-r2 and r4 including replicates A-B. Table S2. Over-represented transcription factor binding sites in genes up-regulated in r1-2 and r4. (XLSX 2249 kb)
DOI: 10.6084/m9.figshare.c.3742352_d2
title: Additional file 2: Table S1. of Transcriptome profiling reveals expression signatures of cranial neural crest cells arising from different axial levels

description: Total expression data from r1-r2 and r4 including replicates A-B. Table S2. Over-represented transcription factor binding sites in genes up-regulated in r1-2 and r4. (XLSX 2249 kb)
DOI: 10.6084/m9.figshare.c.3742391_d1
title: Additional file 1: Table S1. of Relationships between gut microbiota, plasma metabolites, and metabolic syndrome traits in the METSIM cohort

description: List of measured traits. Table S2. Relative abundances of detected taxonomy across 531 METSIM subjects. Table S3. Relative abundances of detected OTUs across 531 METSIM subjects. Table S4. Association of 37 traits with Brayâ  Curtis distance (FDR &lt;0.1). Table S5. Association with OTU richness and Shannonâ  s diversity index. Table S6. The significant associations with individual OTUs (FDR &lt;0.1). Table S7. The significant associations with individual taxons (FDR &lt;0.1). Table S8. Spearman correlations of acetate with 59 traits. Table S9. Spearman correlations of TMAO with 59 traits. Table S10. WGCNA modules and the list of OTUs in each module. Table S11. Representation of taxonomy in each WGCNA module. Table S12. Characteristics of individuals based on the OGTT. Table S13. Representation of taxonomy in each WGCNA modules in subjects with NGT and pre-T2D. (XLSX 3213 kb)
DOI: 10.6084/m9.figshare.c.3743108_d1.v1
title: Additional file 1: of Natural selection drove metabolic specialization of the chromatophore in Paulinella chromatophora

description: Metabolic model of Synechococcus sp. WH 5701 (iCV498). (XLSX 187 kb)
DOI: 10.6084/m9.figshare.c.3743108_d1
title: Additional file 1: of Natural selection drove metabolic specialization of the chromatophore in Paulinella chromatophora

description: Metabolic model of Synechococcus sp. WH 5701 (iCV498). (XLSX 187 kb)
DOI: 10.6084/m9.figshare.c.3743147_d1.v1
title: Additional file 1: of Toll-like receptor 4 in glial inflammatory responses to air pollution in vitro and in vivo

description: Gene kME relationship between modules: The two shared modules, enriched by both treatments, had strong inverse correlations between the gene-module specific kMEs, which is the eigengene-based connectivity for a gene within a module (nPM, R = −0.994; LPS, R = −0.968). Each gene is given a kME for every module, and then placed into the module of best fit. Thus, individual RNAs with increased expression had strong inverse associations with the eigengene for the turquoise module, while RNAs with decreased expression had strong inverse associations with the eigengene for the blue module. As examples, TNFα had a kME of +0.93 in the blue module, but −0.91 in the turquoise module; again, the subunits NF-κB1 and NF-κB2 had positive kMEs of +0.91 and +0.96, respectively, in the blue module, but negative kMEs of −0.86 and −0.93, respectively, in the turquoise module. Together this suggests that the turquoise and the blue modules represent a single network, where the turquoise comprises the decreased RNAs in the network and the blue comprises the increased RNAs. (ZIP 43372 kb)
DOI: 10.15468/dl.v9dr9z
title: Occurrence Download

description: A dataset containing 1822 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Phenological Center - Insects"
 ]
}

 The dataset includes 1822 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038445-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3743147_d1
title: Additional file 1: of Toll-like receptor 4 in glial inflammatory responses to air pollution in vitro and in vivo

description: Gene kME relationship between modules: The two shared modules, enriched by both treatments, had strong inverse correlations between the gene-module specific kMEs, which is the eigengene-based connectivity for a gene within a module (nPM, R = −0.994; LPS, R = −0.968). Each gene is given a kME for every module, and then placed into the module of best fit. Thus, individual RNAs with increased expression had strong inverse associations with the eigengene for the turquoise module, while RNAs with decreased expression had strong inverse associations with the eigengene for the blue module. As examples, TNFα had a kME of +0.93 in the blue module, but −0.91 in the turquoise module; again, the subunits NF-κB1 and NF-κB2 had positive kMEs of +0.91 and +0.96, respectively, in the blue module, but negative kMEs of −0.86 and −0.93, respectively, in the turquoise module. Together this suggests that the turquoise and the blue modules represent a single network, where the turquoise comprises the decreased RNAs in the network and the blue comprises the increased RNAs. (ZIP 43372 kb)
DOI: 10.6084/m9.figshare.c.3743147_d2.v1
title: Additional file 2: Figure S1. of Toll-like receptor 4 in glial inflammatory responses to air pollution in vitro and in vivo

description: A, LPS-increased RNAs: clustered into networks. 16 nodes, composing 6 networks and 3 individual nodes, are depicted. B, LPS-decreased RNAs: two single nodes are depicted. Colors denote different networks. Nodes with two colors belong to both networks. Each network has one highlighted node (colored text, chosen by experimenter) that best represents network function. The circle size represents the number of genes enriched in the node. The width of connecting lines represents the strength of connectivity between nodes, as measured by kappa score. (ZIP 347Â kb)
DOI: 10.6084/m9.figshare.c.3743147_d2
title: Additional file 2: Figure S1. of Toll-like receptor 4 in glial inflammatory responses to air pollution in vitro and in vivo

description: A, LPS-increased RNAs: clustered into networks. 16 nodes, composing 6 networks and 3 individual nodes, are depicted. B, LPS-decreased RNAs: two single nodes are depicted. Colors denote different networks. Nodes with two colors belong to both networks. Each network has one highlighted node (colored text, chosen by experimenter) that best represents network function. The circle size represents the number of genes enriched in the node. The width of connecting lines represents the strength of connectivity between nodes, as measured by kappa score. (ZIP 347Â kb)
DOI: 10.6084/m9.figshare.c.3743159_d1.v1
title: MOESM1 of Breast masses in mammography classification with local contour features

description: Additional file 1: Appendix S1. List of the file names we used in the experiment. This file can be opened in the Microsoft Excel 2010.
DOI: 10.6084/m9.figshare.c.3743159_d1
title: MOESM1 of Breast masses in mammography classification with local contour features

description: Additional file 1: Appendix S1. List of the file names we used in the experiment. This file can be opened in the Microsoft Excel 2010.
DOI: 10.6084/m9.figshare.c.3743162_d2.v1
title: MOESM2 of Protoplast isolation prior to flow cytometry reveals clear patterns of endoreduplication in potato tubers, related species, and some starchy root crops

description: Additional file 2. The raw data of the tissue, diversity panel, and root crop experiments. It contains the relative abundances, in percentage, of each C-value peak as well as the EI value calculated from those percentages.
DOI: 10.6084/m9.figshare.c.3743162_d2
title: MOESM2 of Protoplast isolation prior to flow cytometry reveals clear patterns of endoreduplication in potato tubers, related species, and some starchy root crops

description: Additional file 2. The raw data of the tissue, diversity panel, and root crop experiments. It contains the relative abundances, in percentage, of each C-value peak as well as the EI value calculated from those percentages.
DOI: 10.6084/m9.figshare.c.3743303_d2
title: Additional file 1: Table S1. of Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns

description: Gene Set Enrichment Analysis. Top 10 enriched pathways from 1589 genes with high methylation in cancer tissue. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3743303_d3.v1
title: Additional file 2: Table S2. of Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns

description: Gene Set Enrichment Analysis. Top 10 enriched pathways from 621 genes with low methylation in cancer. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3743336_d1.v1
title: MOESM1 of Combining airborne laser scanning and Landsat data for statistical modeling of soil carbon and tree biomass in Tanzanian Miombo woodlands

description: Additional file 1. PlotData.
DOI: 10.6084/m9.figshare.c.3743303_d3
title: Additional file 2: Table S2. of Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns

description: Gene Set Enrichment Analysis. Top 10 enriched pathways from 621 genes with low methylation in cancer. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3743336_d1
title: MOESM1 of Combining airborne laser scanning and Landsat data for statistical modeling of soil carbon and tree biomass in Tanzanian Miombo woodlands

description: Additional file 1. PlotData.
DOI: 10.6084/m9.figshare.c.3743303_d4.v1
title: Additional file 3: Table S3. of Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns

description: ENCODE and EZH2 transcription factor overlay significantly associated with regions of differential methylation in cancer tissue. A) Transcription factors enriched in the top 10,000 most significant CpGs found in gene regulatory regions with higher methylation levels in the tumor tissues. B) TCGA validation of transcription factors enriched in the top 10,000 most significant CpGs found within gene regulatory regions with higher methylation levels in the tumor tissues. C) Analysis of significant methylation sites overlaid with EZH2 binding data from an androgen-dependent (LNCaP) and an androgen-independent (LNCaP-abl) prostate cancer cell line. D) Transcription factors enriched in the top 10,000 most significant CpGs within gene regulatory regions with higher methylation in the benign-adjacent tissue. E) TCGA validation of transcription factors enriched in the top 10,000 most significant CpGs found within gene regulatory regions with higher methylation in the benign-adjacent tissue. (XLSX 45Â kb)
DOI: 10.15468/dl.rcqbau
title: Occurrence Download

description: A dataset containing 13026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelon labrosus (Risso, 1827)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 13026 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038446-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3743303_d4
title: Additional file 3: Table S3. of Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns

description: ENCODE and EZH2 transcription factor overlay significantly associated with regions of differential methylation in cancer tissue. A) Transcription factors enriched in the top 10,000 most significant CpGs found in gene regulatory regions with higher methylation levels in the tumor tissues. B) TCGA validation of transcription factors enriched in the top 10,000 most significant CpGs found within gene regulatory regions with higher methylation levels in the tumor tissues. C) Analysis of significant methylation sites overlaid with EZH2 binding data from an androgen-dependent (LNCaP) and an androgen-independent (LNCaP-abl) prostate cancer cell line. D) Transcription factors enriched in the top 10,000 most significant CpGs within gene regulatory regions with higher methylation in the benign-adjacent tissue. E) TCGA validation of transcription factors enriched in the top 10,000 most significant CpGs found within gene regulatory regions with higher methylation in the benign-adjacent tissue. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3743357_d3
title: Additional file 3: Table S3. of Poplar stem transcriptome is massively remodelled in response to single or repeated mechanical stimuli

description: Gene Ontology enrichment analysis applied to the clusters. The GO enrichment was performed using the Amigo (1.8) term enrichment tool [58]. The list of A. thaliana orthologs of each cluster was used, and the TAIR database was chosen as a background. The maximum P-value for the threshold was 0.01, except for clusters marked * and ** for which maximum P-value was set at 0.05 and 0.1, respectively. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3743357_d4.v1
title: Additional file 4: Table S4. of Poplar stem transcriptome is massively remodelled in response to single or repeated mechanical stimuli

description: Description of the genes analysed in the refined time-course analysis. Primer sequences are described. *Id_gene corresponds to the gene model found in the Phytozome database [55] for poplar or Arabidopsis (Ath). **Poplar gene name was attributed arbitrarily following the gene function described for the Arabidopsis homologous gene in Phytozome. Gene membership to expression clusters is specified. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3743360_d1.v1
title: Additional file 1: of Survey of medicinal plants in the Khuvsgul and Khangai Mountain regions of Mongolia

description: List of collected of plant voucher specimens of herbarium by Urgamal (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3743357_d4
title: Additional file 4: Table S4. of Poplar stem transcriptome is massively remodelled in response to single or repeated mechanical stimuli

description: Description of the genes analysed in the refined time-course analysis. Primer sequences are described. *Id_gene corresponds to the gene model found in the Phytozome database [55] for poplar or Arabidopsis (Ath). **Poplar gene name was attributed arbitrarily following the gene function described for the Arabidopsis homologous gene in Phytozome. Gene membership to expression clusters is specified. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3743339_d6.v1
title: Additional file 2 of Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions

description: Zip file containing several data tables in tab-separated format, as well as a readme file that explains the contents of each data file. (ZIP 175 kb)
DOI: 10.6084/m9.figshare.c.3743357_d5.v1
title: Additional file 5: Table S5. of Poplar stem transcriptome is massively remodelled in response to single or repeated mechanical stimuli

description: List of “newly regulated” genes after two successive bendings. These genes are not regulated 0.5 h after a single stem bending, but they do become regulated 0.5 h after a second bending (occurring 24 h after the 1st one). *Id_gene corresponds to the gene model found in the Phytozome database [55] for poplar or Arabidopsis (Ath). Log2 expression fold-change is shown: expression fold-change 0.5 h after a single bending compared to a control plant (1B0.5 h/Control) and expression fold-change 0.5 h after a second bending compared to the 24 h PB time-point (2B0.5 h/1B24h). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3743360_d1
title: Additional file 1: of Survey of medicinal plants in the Khuvsgul and Khangai Mountain regions of Mongolia

description: List of collected of plant voucher specimens of herbarium by Urgamal (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3743357_d5
title: Additional file 5: Table S5. of Poplar stem transcriptome is massively remodelled in response to single or repeated mechanical stimuli

description: List of “newly regulated” genes after two successive bendings. These genes are not regulated 0.5 h after a single stem bending, but they do become regulated 0.5 h after a second bending (occurring 24 h after the 1st one). *Id_gene corresponds to the gene model found in the Phytozome database [55] for poplar or Arabidopsis (Ath). Log2 expression fold-change is shown: expression fold-change 0.5 h after a single bending compared to a control plant (1B0.5 h/Control) and expression fold-change 0.5 h after a second bending compared to the 24 h PB time-point (2B0.5 h/1B24h). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3743363_d1.v1
title: Additional file 1: Table S1. of Testosterone, territorial response, and song in seasonally breeding tropical and temperate stonechats

description: Datasets. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.c.3743339_d6
title: Additional file 2 of Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions

description: Zip file containing several data tables in tab-separated format, as well as a readme file that explains the contents of each data file. (ZIP 175 kb)
DOI: 10.6084/m9.figshare.c.3743363_d1
title: Additional file 1: Table S1. of Testosterone, territorial response, and song in seasonally breeding tropical and temperate stonechats

description: Datasets. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.c.3744254_d1.v1
title: Additional file 1: of Clinical patient registry recruitment and retention: a survey of patients in two chronic disease registries

description: These files contain the surveys used to conduct the research described in the manuscript. (ZIP 388Â kb)
DOI: 10.6084/m9.figshare.c.3744254_d1
title: Additional file 1: of Clinical patient registry recruitment and retention: a survey of patients in two chronic disease registries

description: These files contain the surveys used to conduct the research described in the manuscript. (ZIP 388Â kb)
DOI: 10.15468/dl.6xw6b4
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chesnonia verrucosa (Lockington, 1880)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038447-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3744263_d1.v1
title: Additional file 1: of Changes in diet quality during a 12 month weight loss randomised controlled trial

description: Table S1. List of food groups classified as 'positive', 'negative' and 'neutral' in the a priori diet quality score (APDQS). This file contains the list of food groups classified as ‘positive, ‘negative’ and ‘neutral, in the a priori diet quality score (APDQS). Table S2. Median daily consumption of food groups from the Diet Quality Tracker (DQT). This file contains data relating to the median daily consumption of food groups used in the Diet Quality Tracker (DQT). Table S3. Median daily consumption of food groups from the a priori diet quality score (APDQS). This file contains data relating to the median daily consumption of food groups used in the a priori diet quality score (APDQS). Table S4. Median daily nutrient intakes as reported in diet histories. This file contains data relating to the median daily nutrient intakes from the HealthTrack study diet history data used for analysis of this study. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3744263_d1
title: Additional file 1: of Changes in diet quality during a 12 month weight loss randomised controlled trial

description: Table S1. List of food groups classified as 'positive', 'negative' and 'neutral' in the a priori diet quality score (APDQS). This file contains the list of food groups classified as ‘positive, ‘negative’ and ‘neutral, in the a priori diet quality score (APDQS). Table S2. Median daily consumption of food groups from the Diet Quality Tracker (DQT). This file contains data relating to the median daily consumption of food groups used in the Diet Quality Tracker (DQT). Table S3. Median daily consumption of food groups from the a priori diet quality score (APDQS). This file contains data relating to the median daily consumption of food groups used in the a priori diet quality score (APDQS). Table S4. Median daily nutrient intakes as reported in diet histories. This file contains data relating to the median daily nutrient intakes from the HealthTrack study diet history data used for analysis of this study. (XLSX 50 kb)