cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0082078.10fu
title: SH0082078.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0082079.10fu
title: SH0082079.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive14430.20241212.9.2
title: Salinicoccus jeotgali Aslam et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive14430.20251217.10
title: Salinicoccus jeotgali Aslam et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0082080.10fu
title: SH0082080.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive14431.20250331.9.3
title: Salinicoccus luteus Zhang et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive14431.20251217.10
title: Salinicoccus luteus Zhang et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0082081.10fu
title: SH0082081.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive14432.20241212.9.2
title: Salinicoccus siamensis Pakdeeto et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive14432.20251217.10
title: Salinicoccus siamensis Pakdeeto et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive14433.20241212.9.2
title: Salinicoccus kunmingensis Chen et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0082082.10fu
title: SH0082082.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive14433.20251217.10
title: Salinicoccus kunmingensis Chen et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive14434.20241212.9.2
title: Salinicoccus iranensis Amoozegar et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0082083.10fu
title: SH0082083.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive14434.20251217.10
title: Salinicoccus iranensis Amoozegar et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive14435.20250331.9.3
title: Salinicoccus halodurans Wang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0082084.10fu
title: SH0082084.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2ngs20
title: CCDC 2457062: Experimental Crystal Structure Determination

description: Related Article: J. T. Mague, S. K. Mohamed|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ngs42
title: CCDC 2457064: Experimental Crystal Structure Determination

description: Related Article: J. T. Mague, S. K. Mohamed|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ngt21
title: CCDC 2457093: Experimental Crystal Structure Determination

description: Related Article: Jeanette A. Krause, Hairong Guan|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ngt32
title: CCDC 2457094: Experimental Crystal Structure Determination

description: Related Article: Jeanette A. Krause, Hairong Guan|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ngt54
title: CCDC 2457096: Experimental Crystal Structure Determination

description: Related Article: Mihai Răducă|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ngtpn
title: CCDC 2457112: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.ft8z29
title: Occurrence Download

description: A dataset containing 419385 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "Geometry POLYGON((-54.58975 -9.06501,-47.52841 -9.06501,-47.52841 -2.60014,-54.58975 -2.60014,-54.58975 -9.06501))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 419385 records from 542 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020885-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7skbbv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tamarix chinensis Lour.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Living Specimen"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020899-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dna78s
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vriesea schwackeana Mez"
 ]
}

 The dataset includes 51 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020897-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtcftj
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stenella coeruleoalba (Meyen, 1833)",
 "HasCoordinate is true",
 "Geometry POLYGON((-1 37.5, -1 45, 11 45, 11 37.5, -1 37.5))",
 "Year 2020-2023",
 "Month June-August"
 ]
}

 The dataset includes 234 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020898-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsadf6
title: Occurrence Download

description: A dataset containing 19198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Atelopus Duméril & Bibron, 1841"
 ]
}

 The dataset includes 19198 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020901-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ryqhym
title: Occurrence Download

description: A dataset containing 301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dicentrarchus punctatus (Bloch, 1792)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 301 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020902-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sban2h
title: Occurrence Download

description: A dataset containing 4803 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinna nobilis Linnaeus, 1758"
 ]
}

 The dataset includes 4803 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020904-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kx2cu9
title: Occurrence Download

description: A dataset containing 496 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Taxus baccata L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Living Specimen"
 ]
}

 The dataset includes 496 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020906-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27969849
title: Alignment dataset used for phylogenomics analysis.

description: Alignment files used for phylogenomics analysis in the work "Phylotranscriptomics of the giant kelp <i>Macrocystis pyrifera</i> reveals recent diversification and multiple trans-oceanic dispersal events across the Southern Ocean".
DOI: 10.6084/m9.figshare.27969849.v1
title: Alignment dataset used for phylogenomics analysis.

description: Alignment files used for phylogenomics analysis in the work "Phylotranscriptomics of the giant kelp <i>Macrocystis pyrifera</i> reveals recent diversification and multiple trans-oceanic dispersal events across the Southern Ocean".
DOI: 10.15468/dl.r2e8nm
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Taxus brevifolia Nutt.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Living Specimen"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020908-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14284113
title: Codes and MESA files used in the publication "The Energy Sharing Timescale in an Analytic Framework for Common Envelope Hydrodynamics"

description: This repository contains MESA files and additional data for the paper “The Energy Sharing Timescale in an Analytic Framework for Common Envelope Hydrodynamics” by R.W. Everson, M. MacLeod, and E. Ramirez-Ruiz (2024). arXiv:2410.07036

For solar metallicity models, we adapt the inlists and run_star_extras developed for the MESA Isochrones and Stellar Tracks (MIST) package (Dotter 2016; Choi et al. 2016)

The repository contains:



Adapted MIST files for solar metallicity models, for use with MESA r7503 : EST_MIST.zip

MESA files for low metallicity models, for use with MESA r10398 : EST_MESA_lowZ.zip

Output data from MESA and 3D FLASH (Fryxell et al 2020) models and plotting code notebook required for parameter space plots : EST_PLOTS.zip


EST_MIST.zip Version: MESA r7503, mesasdk 20141212 revision 245EST_MESA_lowZ.zip Version: MESA r10398, mesasdk 20180822
DOI: 10.5281/zenodo.14284114
title: Codes and MESA files used in the publication "The Energy Sharing Timescale in an Analytic Framework for Common Envelope Hydrodynamics"

description: This repository contains MESA files and additional data for the paper “The Energy Sharing Timescale in an Analytic Framework for Common Envelope Hydrodynamics” by R.W. Everson, M. MacLeod, and E. Ramirez-Ruiz (2024). arXiv:2410.07036

For solar metallicity models, we adapt the inlists and run_star_extras developed for the MESA Isochrones and Stellar Tracks (MIST) package (Dotter 2016; Choi et al. 2016)

The repository contains:



Adapted MIST files for solar metallicity models, for use with MESA r7503 : EST_MIST.zip

MESA files for low metallicity models, for use with MESA r10398 : EST_MESA_lowZ.zip

Output data from MESA and 3D FLASH (Fryxell et al 2020) models and plotting code notebook required for parameter space plots : EST_PLOTS.zip


EST_MIST.zip Version: MESA r7503, mesasdk 20141212 revision 245EST_MESA_lowZ.zip Version: MESA r10398, mesasdk 20180822
DOI: 10.15468/dl.bpmu7g
title: Occurrence Download

description: A dataset containing 8203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Cereus pedunculatus (Pennant, 1777)"
 ]
}

 The dataset includes 8203 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020907-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.de8gq8
title: Occurrence Download

description: A dataset containing 12948 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diplodus sargus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12948 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020909-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2ktc3w
title: CCDC 2377858: Experimental Crystal Structure Determination

description: Related Article: Juefei Dai|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kp4cs
title: CCDC 2373805: Experimental Crystal Structure Determination

description: Related Article: Li Chen|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.