cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.11583/dtu.21937232.v2
title: Data for: Fuhrman, D.R., Klahn, M. & Zhai, Y. (2023) A new probability density function for the surface elevation in irregular seas. J. Fluid Mech. 970, A38.

description: Data from the paper of Fuhrman et al. (2023) is provided. This includes:<br>Surface elevation time series generated from the directionally-spread, irregular-wave theory of Madsen & Fuhrman (2012);Surface elevation maps generated by the fully-nonlinear Pseudospectral Fourier-Legendre (PFL) wave model of Klahn et al. (2021);A Matlab function for generating the new probability density function for the surface elevation in an irregular wave field, as derived and discussed in the paper.This research has been financially supported by the Independent Research Fund Denmark project STORM: STatistics and fOrces on stRuctures from extreMe water waves in finite depth (grant ID: 10.46540/2035-00064B). This support is greatly appreciated.Find the project in DTU Data here: STORM:STatistics and fOrces on stRuctures from extreMe water waves in finite depth<br><b>References</b>Fuhrman, D.R., Klahn, M. & Zhai, Y. (2023) A new probability density function for the surface elevation in irregular seas. <i>J. Fluid Mech.</i> 970, A38. DOI: https://doi.org/10.1017/jfm.2023.669Klahn, M., Madsen, P.A. & Fuhrman, D.R. (2021) Simulation of three-dimensional nonlinear water waves using a pseudospectral volumetric method with an artificial boundary condition. <i>Int. J. Numer. Meth. Fluids</i> <b>93</b>, 1843-1870. DOI: https://doi.org/10.1002/fld.4956Madsen, P.A. & Fuhrman, D.R. (2012) Third-order theory for multi-directional irregular waves. <i>J. Fluid Mech.</i> <b>698</b>, 304-334. DOI: https://doi.org/10.1017/jfm.2012.87<br><br><br>
DOI: 10.6084/m9.figshare.7465751
title: Additional file 4: of RNA sequencing and anthocyanin synthesis-related genes expression analyses in white-fruited Vaccinium uliginosum

description: Table S4. Differentially expressed genes from KEGG enrichment (XLSX 13 kb)
DOI: 10.6084/m9.figshare.10087208
title: MOESM1 of Comprehensive analysis of genetic and evolutionary features of the hepatitis E virus

description: Additional file 1: Table S1. Information of the selected HEV sequences included in the study.
DOI: 10.6084/m9.figshare.10087208.v1
title: MOESM1 of Comprehensive analysis of genetic and evolutionary features of the hepatitis E virus

description: Additional file 1: Table S1. Information of the selected HEV sequences included in the study.
DOI: 10.24403/jp.1336412
title: Johann Royer (1574-1655) und die Flora des Nordharzes, Hrsg. vom Botanischen Arbeitskreis Nordharz e.V. - Abh. Ber. Mus. Heineanum 4, Sonderheft, 1998. / [rezensiert von] H.-J. Zündorf
DOI: 10.6084/m9.figshare.10087217
title: MOESM2 of Comprehensive analysis of genetic and evolutionary features of the hepatitis E virus

description: Additional file 2: Table S2. Nucleotide composition of the HEV coding sequences.
DOI: 10.6084/m9.figshare.10087217.v1
title: MOESM2 of Comprehensive analysis of genetic and evolutionary features of the hepatitis E virus

description: Additional file 2: Table S2. Nucleotide composition of the HEV coding sequences.
DOI: 10.6084/m9.figshare.10087226
title: MOESM3 of Comprehensive analysis of genetic and evolutionary features of the hepatitis E virus

description: Additional file 3: Tables S3 and S4. RSCU patterns of the HEV coding sequences, sorted by ORF and by genotype. Detailed information on common vs uncommon preferred codons, ratio of common preferred codons and over- vs under-represented preferred codons in the HEV coding sequences.
DOI: 10.6084/m9.figshare.10087226.v1
title: MOESM3 of Comprehensive analysis of genetic and evolutionary features of the hepatitis E virus

description: Additional file 3: Tables S3 and S4. RSCU patterns of the HEV coding sequences, sorted by ORF and by genotype. Detailed information on common vs uncommon preferred codons, ratio of common preferred codons and over- vs under-represented preferred codons in the HEV coding sequences.
DOI: 10.25549/usctheses-c89-4471
title: Corporate social responsibility: do perceptions equate to reality? [pdf]
DOI: 10.11583/dtu.21937232
title: Data for: Fuhrman, D.R., Klahn, M. & Zhai, Y. (2023) A new probability density function for the surface elevation in irregular seas. J. Fluid Mech. 970, A38.

description: Data from the paper of Fuhrman et al. (2023) is provided. This includes:<br>Surface elevation time series generated from the directionally-spread, irregular-wave theory of Madsen & Fuhrman (2012);Surface elevation maps generated by the fully-nonlinear Pseudospectral Fourier-Legendre (PFL) wave model of Klahn et al. (2021);A Matlab function for generating the new probability density function for the surface elevation in an irregular wave field, as derived and discussed in the paper.This research has been financially supported by the Independent Research Fund Denmark project STORM: STatistics and fOrces on stRuctures from extreMe water waves in finite depth (grant ID: 10.46540/2035-00064B). This support is greatly appreciated.Find the project in DTU Data here: STORM:STatistics and fOrces on stRuctures from extreMe water waves in finite depth<br><b>References</b>Fuhrman, D.R., Klahn, M. & Zhai, Y. (2023) A new probability density function for the surface elevation in irregular seas. <i>J. Fluid Mech.</i> 970, A38. DOI: https://doi.org/10.1017/jfm.2023.669Klahn, M., Madsen, P.A. & Fuhrman, D.R. (2021) Simulation of three-dimensional nonlinear water waves using a pseudospectral volumetric method with an artificial boundary condition. <i>Int. J. Numer. Meth. Fluids</i> <b>93</b>, 1843-1870. DOI: https://doi.org/10.1002/fld.4956Madsen, P.A. & Fuhrman, D.R. (2012) Third-order theory for multi-directional irregular waves. <i>J. Fluid Mech.</i> <b>698</b>, 304-334. DOI: https://doi.org/10.1017/jfm.2012.87<br><br><br>
DOI: 10.6084/m9.figshare.17427326
title: Data from: Nuclear Progestin Receptor Mediated Linkage of Blood Coagulation and Ovulation

description: Supplemntal information for a manuscript entitiled "Nuclear Progestin Receptor Mediated Linkage of Blood Coagulation and Ovulation"<br>
DOI: 10.6084/m9.figshare.7465865
title: Additional file 1: of Identification and characteristics of muscle growth-related microRNA in the Pacific abalone, Haliotis discus hannai

description: Primers used for PCR and qRT-PCR. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6933566.v1
title: Additional file 6: of Comparative transcriptomics reveals suppressed expression of genes related to auxin and the cell cycle contributes to the resistance of cucumber against Meloidogyne incognita

description: Table S3. The correlation network of the MEhoneydew module. Identification of the 259 genes with a raised weighted cutoff value &gt;â 0.16. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.6171593
title: Reliabilities of Intraindividual Variability Indicators with Autocorrelated Longitudinal Data: Implications for Longitudinal Study Designs

description: Intraindividual variability can be measured by the intraindividual standard deviation (), intraindividual variance (), estimated <i>h</i>th-order autocorrelation coefficient (), and mean square successive difference (). Unresolved issues exist in the research on reliabilities of intraindividual variability indicators: (1) previous research only studied conditions with 0 autocorrelations in the longitudinal responses; (2) the reliabilities of and have not been studied. The current study investigates reliabilities of , , , , and the intraindividual mean, with autocorrelated longitudinal data. Reliability estimates of the indicators were obtained through Monte Carlo simulations. The impact of influential factors on reliabilities of the intraindividual variability indicators is summarized, and the reliabilities are compared across the indicators. Generally, all the studied indicators of intraindividual variability were more reliable with a more reliable measurement scale and more assessments. The reliabilities of were generally lower than those of and , the reliabilities of were usually between those of and unless the scale reliability was large and/or the interindividual standard deviation in autocorrelation coefficients was large, and the reliabilities of the intraindividual mean were generally the highest. An R function is provided for planning longitudinal studies to ensure sufficient reliabilities of the intraindividual indicators are achieved.
DOI: 10.6084/m9.figshare.21621705
title: Children’s Dental Panoramic Radiographs Dataset

description: We provide the dataset folder, which includes three types of datasets, namely, "Child Dental Caries Segmentation Dataset", "Child Dental Disease Detection Dataset" and "Adult Dental Segmentation Dataset ". The "Child Dental Caries Segmentation Dataset" and the "Child Dental Disease Detection Dataset" contain "Train" and "Test ", which are used to record the training set and test set of the dataset, the training set or test set includes the original image and annotation information (segmentation annotation is mask file, test annotation is JSON file). The "Adult dental segmentation dataset" contains the original image and the mask file obtained by segmenting the adult dental panoramic X-ray.
DOI: 10.6084/m9.figshare.6933701
title: Additional file 3: of Construction and analysis of a lncRNA (PWRN2)-mediated ceRNA network reveal its potential roles in oocyte nuclear maturation of patients with PCOS

description: KEGG pathway analysis of the target genes regulated by PWRN2. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.6933680.v1
title: Additional file 1: of Construction and analysis of a lncRNA (PWRN2)-mediated ceRNA network reveal its potential roles in oocyte nuclear maturation of patients with PCOS

description: The primers used in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7465952
title: Additional file 7: of Blockade of ARHGAP11A reverses malignant progress via inactivating Rac1B in hepatocellular carcinoma

description: Excel S1. The proteins interacted with ARHGAP11A in HCC. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.6933692
title: Additional file 2: of Construction and analysis of a lncRNA (PWRN2)-mediated ceRNA network reveal its potential roles in oocyte nuclear maturation of patients with PCOS

description: GO annotation of the target genes regulated by PWRN2. (XLSX 283 kb)
DOI: 10.24403/jp.1336414
title: Weberling; F.: Die Infloreszenzen : Typologie und Stellung im Aufbau des Vegetationskörpers, Band II/2: Monotele und polytele Synfloreszenzen. -Jena ; Stuttgart ; Lübeck ; Ulm : Gustav Fischer Verlag, 1998 / [rezensiert von] H. Manitz
DOI: 10.6084/m9.figshare.6933713
title: Additional file 4: of Construction and analysis of a lncRNA (PWRN2)-mediated ceRNA network reveal its potential roles in oocyte nuclear maturation of patients with PCOS

description: The potential target mRNAs of putative miRNAs with MREs in PWRN2. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.6933701.v1
title: Additional file 3: of Construction and analysis of a lncRNA (PWRN2)-mediated ceRNA network reveal its potential roles in oocyte nuclear maturation of patients with PCOS

description: KEGG pathway analysis of the target genes regulated by PWRN2. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.7465964.v1
title: Additional file 2: of Comparative genomic analysis revealed rapid differentiation in the pathogenicity-related gene repertoires between Pyricularia oryzae and Pyricularia penniseti isolated from a Pennisetum grass

description: Table S1. The CAZymes identified in P1609 and other fungi. (XLS 47 kb)
DOI: 10.6084/m9.figshare.7465973
title: MOESM10 of Gut microbiota dysbiosis in male patients with chronic traumatic complete spinal cord injury

description: Additional file 10. Alpha-diversity index inter-group difference test chart between healthy male and paraplegic SCI cohorts.
DOI: 10.6084/m9.figshare.7465988
title: MOESM12 of Gut microbiota dysbiosis in male patients with chronic traumatic complete spinal cord injury

description: Additional file 12. VIF of selected environmental factors by the functions of envfit (permuâ =â 999) and vif.cca among the quadriplegia and paraplegic SCI groups.
DOI: 10.6084/m9.figshare.6933758.v1
title: Additional file 3: of Dealing with the adaptive immune system during de novo evolution of genes from intergenic sequences

description: Source Table for Fig. 4. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.22662401.v1
title: Additional file 4 of Long non-coding RNA crnde promotes deep vein thrombosis by sequestering miR-181a-5p away from thrombogenic Pcyox1l

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.6933773.v1
title: Additional file 4: of Dealing with the adaptive immune system during de novo evolution of genes from intergenic sequences

description: Source Table for Fig. 5. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.6933794
title: Additional file 6: of Dealing with the adaptive immune system during de novo evolution of genes from intergenic sequences

description: Gains of expression from single tissues in IRA to additional tissues in GER or FRA. The Table includes all INT windows that show an expression in a single tissue only (above the aggregate cut-off level of 8 reads) and that have gained at least one additional expression in either GER or FRA. (XLSX 5715 kb)
DOI: 10.6084/m9.figshare.22662401
title: Additional file 4 of Long non-coding RNA crnde promotes deep vein thrombosis by sequestering miR-181a-5p away from thrombogenic Pcyox1l

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.7982387
title: Quantitative proteomics reveals the mechanisms of hydrogen-conferred protection against hyperoxia-induced injury in type II alveolar epithelial cells

description: <b>Purpose/Aim:</b> Exposure to hyperoxia leads to lung injury both <i>in vivo</i> and <i>in vitro</i>, molecular hydrogen has been reported to protect against hyperoxia-induced lung injury; however, the underlying molecular mechanisms remain largely unknown. The objective of this study was to characterize differentially regulated proteins and biological processes in hydrogen-treated hyperoxic primary type II alveolar epithelial cells (AECIIs) to elucidate the protective mechanism of hydrogen using quantitative proteomics. <b>Materials and Methods:</b> AECIIs were divided into three groups that were cultured for 24 h in three different conditions: control (21% oxygen), hyperoxia (95% oxygen), and hyperoxia + hydrogen. Morphologic examination, flow cytometric analysis, cell viability assessment and analysis of the expression of apoptosis-associated proteins Bax and Bcl-2 as well as AECI markers (AQP5, T1α) and an AECII marker (SP-C) were performed for each group. The TMT labeling quantitative proteome technique was used to detect changes in the protein expression profile, and bioinformatics analysis was performed. <b>Results:</b> Hydrogen plays a protective role in hyperoxia-induced damage in AECIIs, as evidenced by reduced apoptosis, increased viability and survival, improved morphology, and enhanced transdifferentiation of AECIIs into AECIs. A total of 5782 proteins were identified in our study, of which 162 were significantly altered in abundance after hyperoxia exposure, and 97 were significantly altered in abundance in response to hydrogen treatment. The Gene Ontology and KEGG enrichment analyses identified a large number of proteins and biological processes that may responsible for the protective effect of hydrogen, including VEGFA, PDGFB, IGFBP3, EDN1, NADPH oxidase, the coagulation cascade, etc. <b>Conclusions:</b> Molecular hydrogen protects AECIIs from hyperoxic injury by complex mechanisms involving a variety of proteins and biological processes, such as VEGFA, PDGFB, IGFBP3, EDN1, NADPH oxidase and the coagulation cascade. These findings suggest novel pathways that need to be investigated as possible therapeutic targets for hyperoxia-induced lung injury.
DOI: 10.11583/dtu.21937232.v1
title: Data for: Fuhrman, D.R., Klahn, M. & Zhai, Y. (2023) A new probability density function for the surface elevation in irregular seas. <i>J. Fluid Mech.</i> (in press).

description: Data from the paper of Fuhrman et al. (2023) is provided. This includes:<br>Surface elevation time series generated from the directionally-spread, irregular-wave theory of Madsen & Fuhrman (2012);Surface elevation maps generated by the fully-nonlinear Pseudospectral Fourier-Legendre (PFL) wave model of Klahn et al. (2021);A Matlab function for generating the new probability density function for the surface elevation in an irregular wave field, as derived and discussed in the paper.This research has been financially supported by the Independent Research Fund Denmark project STORM: STatistics and fOrces on stRuctures from extreMe water waves in finite depth (grant ID: 10.46540/2035-00064B). This support is greatly appreciated.<br><b>References</b>Fuhrman, D.R., Klahn, M. & Zhai, Y. (2023) A new probability density function for the surface elevation in irregular seas. <i>J. Fluid Mech.</i> (in press). DOI: https://doi.org/10.1017/jfm.2023.669Klahn, M., Madsen, P.A. & Fuhrman, D.R. (2021) Simulation of three-dimensional nonlinear water waves using a pseudospectral volumetric method with an artificial boundary condition. <i>Int. J. Numer. Meth. Fluids</i> <b>93</b>, 1843-1870. DOI: https://doi.org/10.1002/fld.4956Madsen, P.A. & Fuhrman, D.R. (2012) Third-order theory for multi-directional irregular waves. <i>J. Fluid Mech.</i> <b>698</b>, 304-334. DOI: https://doi.org/10.1017/jfm.2012.87<br><br><br>
DOI: 10.6084/m9.figshare.6933956
title: Additional file 7: of Insights into the cotton anther development through association analysis of transcriptomic and small RNA sequencing

description: Table S5. Data statistics for microRNA sequencing. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6933806
title: Additional file 7: of Dealing with the adaptive immune system during de novo evolution of genes from intergenic sequences

description: Sample designations for transcriptome samples and read count overview. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.13219436
title: Additional file 5 of De novo assembly and analysis of the transcriptome of the Dermacentor marginatus genes differentially expressed after blood-feeding and long-term starvation

description: Additional file 5: Table S5. Annotation table of D. marginatus female adult transcriptome analysis.
DOI: 10.6084/m9.figshare.6933962
title: Additional file 9: of Insights into the cotton anther development through association analysis of transcriptomic and small RNA sequencing

description: Table S7. Prediction of target genes for differentially expressed miRNAs, which between SCP and PM and KEGG enrichment of target genes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.13219436.v1
title: Additional file 5 of De novo assembly and analysis of the transcriptome of the Dermacentor marginatus genes differentially expressed after blood-feeding and long-term starvation

description: Additional file 5: Table S5. Annotation table of D. marginatus female adult transcriptome analysis.
DOI: 10.6084/m9.figshare.13219433
title: Additional file 4 of De novo assembly and analysis of the transcriptome of the Dermacentor marginatus genes differentially expressed after blood-feeding and long-term starvation

description: Additional file 4: Table S4. Raw reads alignment results.
DOI: 10.6084/m9.figshare.6933956.v1
title: Additional file 7: of Insights into the cotton anther development through association analysis of transcriptomic and small RNA sequencing

description: Table S5. Data statistics for microRNA sequencing. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.13219439
title: Additional file 6 of De novo assembly and analysis of the transcriptome of the Dermacentor marginatus genes differentially expressed after blood-feeding and long-term starvation

description: Additional file 6: Table S6. Unigenes used in molecular function, cellular component and biological process anaylisis by GO annotation.
DOI: 10.6084/m9.figshare.6933560.v1
title: MOESM4 of Cecal microbiome profile altered by Salmonella enterica, serovar Enteritidis inoculation in chicken

description: Additional file 4. The differentially abundant genera between treated and control groups within each time point.
DOI: 10.6084/m9.figshare.6933566
title: Additional file 6: of Comparative transcriptomics reveals suppressed expression of genes related to auxin and the cell cycle contributes to the resistance of cucumber against Meloidogyne incognita

description: Table S3. The correlation network of the MEhoneydew module. Identification of the 259 genes with a raised weighted cutoff value &gt;â 0.16. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.6933962.v1
title: Additional file 9: of Insights into the cotton anther development through association analysis of transcriptomic and small RNA sequencing

description: Table S7. Prediction of target genes for differentially expressed miRNAs, which between SCP and PM and KEGG enrichment of target genes. (XLSX 11 kb)
DOI: 10.25402/fsg.14798454.v1
title: Supplementary Table 5. Computational drug repositioning for ischemic stroke: Neuroprotective drug discovery

description: Supplementary Table 5
DOI: 10.6084/m9.figshare.6933947
title: Additional file 4: of Insights into the cotton anther development through association analysis of transcriptomic and small RNA sequencing

description: Table S3. Metabolism and signaling pathway gene expression levels. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6933959.v1
title: Additional file 8: of Insights into the cotton anther development through association analysis of transcriptomic and small RNA sequencing

description: Table S6. Target gene prediction for differentially expressed miRNAs, which between SCP and MRP, and KEGG enrichment of target genes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.13219427.v1
title: Additional file 2 of De novo assembly and analysis of the transcriptome of the Dermacentor marginatus genes differentially expressed after blood-feeding and long-term starvation

description: Additional file 2: Table S2. Overview of sequencing quality control.
DOI: 10.6084/m9.figshare.7466066
title: MOESM5 of Gut microbiota dysbiosis in male patients with chronic traumatic complete spinal cord injury

description: Additional file 5. RDA/CCA showed that BMI, GLU and HDL significantly affected bacterial composition in genus level between the healthy male and SCI groups.
DOI: 10.25934/pr00004586.0
title: Available datapackage for study 'A Randomized, Double-Blind Trial of Anti-TNF Chimeric Monoclonal Antibody (Infliximab) in Combination With Methotrexate for the Treatment of Patients With Polyarticular Juvenile Rheumatoid Arthritis'

description: The purpose of this study is to evaluate the effectiveness and safety of infliximab (Remicade) in patients with Juvenile Rheumatoid Arthritis (JRA).
DOI: 10.6084/m9.figshare.6933938
title: Additional file 1: of Insights into the cotton anther development through association analysis of transcriptomic and small RNA sequencing

description: Table S1. Data statistics for transcriptome sequencing. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6933938.v1
title: Additional file 1: of Insights into the cotton anther development through association analysis of transcriptomic and small RNA sequencing

description: Table S1. Data statistics for transcriptome sequencing. (XLSX 11 kb)