cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vy425scbbb
title: Antimicrobial susceptibility profile and virulence genes of Escherichia coli strains from Alouatta pigra at the Lacandon jungle-Chiapas-Mexico

description: Alouatta pigra is one of the three non-human primates that inhabit Mexico, whose role in tropical forests is as seed dispersers, playing an essential role in the regeneration of forests and jungles, which impacts the conservation of natural environments.
In Mexico, this species is considered an endangered species (SEMARNAT, 2010) as a threatened species by the International Union for Conservation of Nature (IUCN).
The purpose of this work was to isolate Escherichia coli from the feces of A. pigra and determine the antimicrobial susceptibility profile and virulence genes in the southern region of the Lacandon jungle, Chiapas, Mexico. The feces collection sites were two: the first is the Montes Azules Biosphere Reserve (conserved area) and the second was Marqués de Comillas, an area of ​​the jungle where there is disturbance, presence of human, livestock and ecotourism activities.
Although no significant differences were observed, E. coli exhibited the highest proportion of resistance against ampicillin and cefotaxime from the conserved zone (23.1% for each). In addition, the multidrug resistance (MDR) phenotype was higher in E. coli isolated from the Montes Azules Biosphere Reserve (15.4%), compared to those from Marqués de Comillas (7.1%).
No virulence genes were found in the E. coli strains isolated from A. pigra feces inhabiting Marqués de Comillas or the Montes Azules Reserve, Chiapas.
DOI: 10.6084/m9.figshare.28547210.v1
title: FASTAs from Limitations of Sequence Dissimilarity as a Predictor of Prokaryotic Lineage

description: FILE_S1.zip
DOI: 10.6084/m9.figshare.5675140.v1
title: TEM quantitation.pzf

description: Quantitation of the number of flagella observed in TEM images of B. dolosa grown under different conditions<br>
DOI: 10.17632/rr5xf4p4j7
title: TBI

description: Data from a clinical study of two interventions including ice cap cooling and remote ischemic conditioning on stroke patients including GOSE and Marshall CT scan and Apache 2 and SOD and TTN F-alpha and interleukin 10 in four periods including admission time, 72 hours, 6 days and 28 days after admission.
DOI: 10.6084/m9.figshare.24160719.v1
title: Supplementary Material for: Time of delivery contributes to mortality and morbidity in preterm infants

description: Abstract Introduction Knowledge about the time of birth and its impact on premature infants is essential when planning perinatal and neonatal care and resource allocation. We studied the time of birth and its contribution to early death and morbidity in preterm infants. Methods We explored the time and mode of birth of infants with birthweight of &lt;1500g and gestational age of &lt;32+0/7 weeks. Additionally, we divided the infants into three groups stratified by their time of birth, i.e. during office hours, evening, and nighttime and assessed associations between these groups and mortality and morbidity. Results The study comprised 1610 infants of whom 156 (10%) died during their stay in NICU. The highest number of deliveries occurred on Fridays (21%, n=341/1610), primarily due to high number of cesarean sections. Deliveries peaked on workdays at 10 a.m. and 2 p.m. Mortality was lowest among infants born on Fridays (6%, n=21/341) and highest on Mondays (13%, n=28/218). Intraventricular hemorrhage (IVH) (OR 1.50, 95% Cl 1.10-2.03, p=0.010) and necrotizing enterocolitis (NEC) (OR 2.11, 95%Cl 1.13-3.91, p=0.019) were more common among infants born at nighttime. These associations attenuated after adjustment for covariates. Conclusion Deliveries of premature infants peaked on Fridays. Mortality was lower among those born on Fridays, compared with Mondays. Many low-risk deliveries on Fridays may decrease, and the tendency to postpone high-risk deliveries to Mondays, increase the proportional risk of mortality. Indication of higher risk of IVH and NEC among infants born during nighttime may be due to different patient population.
DOI: 10.6084/m9.figshare.3515744.v1
title: Appendix D. Simulation and testing process.

description: Simulation and testing process.
DOI: 10.6084/m9.figshare.6015971.v1
title: Supplementary Material for: Testosterone Deprivation Aggravates Left-Ventricular Dysfunction in Male Obese Insulin-Resistant Rats via Impairing Cardiac Mitochondrial Function and Dynamics Proteins

description: <b><i>Background:</i></b> We have previously reported that testosterone deprivation at a very young age accelerated, but did not aggravate, left-ventricular (LV) dysfunction in obese insulin-resistant rats. However, the effects of testosterone deprivation during adulthood on LV function in obese insulin-resistant rats remains unclear. We hypothesized that testosterone deprivation aggravates LV dysfunction and cardiac autonomic imbalance via the impairment of cardiac mitochondrial function and dynamics proteins, a reduction in insulin receptor function, and an increase in apoptosis in obese insulin-resistant rats. <b><i>Methods:</i></b> Male rats were fed on either a normal diet (ND) or a high-fat diet (HFD) for 12 weeks. They were then subdivided into 2 groups: sham operation (NDS, HFS) and orchiectomy (NDO, HFO). Metabolic parameters, blood pressure, heart rate variability (HRV), and LV function were determined at baseline and before and after orchiectomy. Mitochondrial function and dynamics proteins, insulin signaling, and apoptosis were determined 12 weeks postoperatively. <b><i>Results:</i></b> HFS rats exhibited obese insulin resistance, depressed HRV, and LV dysfunction. In HFO rats, systolic blood pressure was increased with more excessive depression of HRV and increased LV dysfunction, compared with HFS rats. These adverse cardiac effects were consistent with markedly increased mitochondrial dysfunction, reduced mitochondrial complex I and III proteins, reduced mitochondrial fusion proteins, and increased apoptosis, compared with HFS rats. However, testosterone deprivation did not lead to any alteration in the insulin-resistant condition in HFO rats, compared with HFS rats. <b><i>Conclusion:</i></b> We concluded that testosterone deprivation during adulthood aggravated the impairment of mitochondrial function, mitochondrial respiratory complex, mitochondrial dynamics proteins, and apoptosis, leading to LV dysfunction in obese insulin-resistant rats.
DOI: 10.15468/dl.ttvr24
title: Occurrence Download

description: A dataset containing 6317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Ectemnius continuus (Fabricius, 1804)"
 ]
}

 The dataset includes 6317 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009422-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25158014.v1
title: Supplementary Material for: A Prognostic Model for Survival in Patients with Gastric Signet-Ring Cell Carcinoma

description: Background: The objective of our study was to develop a nomogram to predict overall survival (OS) and cancer-specific survival (CSS) in patients with gastric signet ring cell carcinoma (GSRCC).
Patients and Methods: A total of 3408 GSRCC patients between 1975 and 2017 were screened from the Surveillance, Epidemiology, and End Results (SEER) database and randomly divided into training and validation cohorts. Univariate and multivariate Cox analyses were conducted to identify independent prognostic factors for the construction of a nomogram. The performance of the model was then assessed by the concordance index (C-index), calibration plot and area under the receiver operating characteristic (ROC) curve (AUC). Then, the novel nomogram was further assessed by 64 GSRCC patients from our hospital as the external cohort.
Results: We identified age, tumor lymph node metastasis (TNM) staging system, surgery and chemotherapy as significant independent elements of prognosis. On this basis, a nomogram was constructed, with a C-index of OS in the training and validation cohorts of 0.763 (95% CI: 0.751–0.774) and 0.766 (95% CI: 0.748–0.784) and a C-index of CSS of 0.765 (95% CI: 0.753–0.777) and 0.773 (95% CI: 0.755–0.791), respectively. The AUCs of the nomogram for predicting 2- and 5-year OS were 0.848 and 0.885, respectively, and those for predicting CSS were 0.854 and 0.899, respectively, demonstrating the excellent predictive value of the constructed nomogram compared to the traditional AJCC staging system. Similar results were also observed in both the internal and external validation sets.
Conclusion: The nomogram provided an accurate tool to predict OS and CSS in patients with GSRCC, which can assist clinicians in making predictions about individual patient survival.
DOI: 10.6084/m9.figshare.28426133.v1
title: Codes and outputs to rerun the analysis in the paper

description: This repository will need to be updated on final publication to reorganise file structure and better explain the output files
DOI: 10.6084/m9.figshare.5127433.v1
title: Supplementary Material for: Autophagy Controls Acquisition of Aging Features in Macrophages

description: Macrophages provide a bridge linking innate and adaptive immunity. An increased frequency of macrophages and other myeloid cells paired with excessive cytokine production is commonly seen in the aging immune system, known as ‘inflamm-aging'. It is presently unclear how healthy macrophages are maintained throughout life and what connects inflammation with myeloid dysfunction during aging. Autophagy, an intracellular degradation mechanism, has known links with aging and lifespan extension. Here, we show for the first time that autophagy regulates the acquisition of major aging features in macrophages. In the absence of the essential autophagy gene Atg7, macrophage populations are increased and key functions such as phagocytosis and nitrite burst are reduced, while the inflammatory cytokine response is significantly increased - a phenotype also observed in aged macrophages. Furthermore, reduced autophagy decreases surface antigen expression and skews macrophage metabolism toward glycolysis. We show that macrophages from aged mice exhibit significantly reduced autophagic flux compared to young mice. These data demonstrate that autophagy plays a critical role in the maintenance of macrophage homeostasis and function, regulating inflammation and metabolism and thereby preventing immunosenescence. Thus, autophagy modulation may prevent excess inflammation and preserve macrophage function during aging, improving immune responses and reducing the morbidity and mortality associated with inflamm-aging.
DOI: 10.6084/m9.figshare.23903049.v1
title: pneumonia

description: Cox model for pneumia death in old patients
DOI: 10.5281/zenodo.15649370
title: Plant species-habitat networks in a mosaic landscape of restored and fragmented tropical forests
DOI: 10.5281/zenodo.15649371
title: Plant species-habitat networks in a mosaic landscape of restored and fragmented tropical forests
DOI: 10.5281/zenodo.15920713
title: Ex Situ Fabrication of Superconducting Nanostructures for Low-Temperature STM

description: Here, the data underlying all figures of the paper "Ex Situ Fabrication of Superconducting Nanostructures for Low-Temperature STM" is given in .csv or .txt file format.Furthermore, raw data files are provided.The STM/STS data was recorded and stored with the Nanonis SPM Control Software Version Generic 5 in the Nanonis file format (.sxm) for scan images, binary file format (.3ds) for STSgrids and ASCII file format for simple point STS.
DOI: 10.15468/dl.fd6fg4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solenopsis invicta",
 "Country is Vanuatu",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017986-250711103210423/datasets/export for details.
DOI: 10.15468/dl.jrwqef
title: Occurrence Download

description: A dataset containing 1544 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tillandsia fendleri"
 ]
}

 The dataset includes 1544 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017985-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qzwvj
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Grevillea robusta",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 407 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017987-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdk259
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solenopsis invicta",
 "Country is Marshall Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017988-250711103210423/datasets/export for details.
DOI: 10.6084/m9.figshare.20338245.v1
title: Data and R code for Culex acharistus

description: #Data and R code for: The role of temperature in shaping Culex acharistus mosquitoes (Diptera: Culicidae) life history traits in its southern limit of distribution (Patagonia-Argentina)
#Send for publication July 2022
#Manuscript Authors: Grech MG, Miserendino ML, Almirón WR.
#Author of R code, data curation and management: Grech MG
<br>
DOI: 10.15468/dl.7jfbfx
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Vanilla"
 ]
}

 The dataset includes 170 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017991-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p925yy
title: Occurrence Download

description: A dataset containing 192802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 192802 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017955-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ncdmy2
title: Occurrence Download

description: A dataset containing 3723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Passer domesticus",
 "Country is Ecuador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3723 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017989-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhf4gv
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Setophaga magnolia)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 127 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017992-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/uwqerb
title: Data for "Endogenous, yet exotic, sulfur in the lunar mantle"

description: This file contains elemental and isotopic compositions of sulfides identified among individual regolith particles from 73002.
DOI: 10.15468/dl.8bgwzj
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Desmognathus adatsihi)"
 ]
}

 The dataset includes 150 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017990-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybp36y
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllium gardabagusi"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017994-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29574626
title: Artificial Neurons, Neuromorphic Cells, and Synthetic Synapses Based on Hydrogen Bonds and Confined Water: Principles, Current Research, Modeling, Applications, Achievements, Scientific Groups, and Prospects

description: This work explores the emerging field of neuromorphic computing systems based on hydrogen bonds and confined water. It analyzes artificial neurons, synthetic synapses, and neuromorphic devices utilizing ionic transport in aqueous environments. The study highlights the unique physical properties of confined water, the role of hydrogen bonding, and the Grotthuss mechanism of proton transport for creating energy-efficient, adaptive, and bio-compatible computing architectures. It reviews current research, advanced materials including nanofluidic diodes, organic and biopolymer memristors, covalent organic frameworks, and modeling approaches such as molecular dynamics and machine learning potentials. Applications in artificial intelligence, bioelectronics, and human-machine interfaces are discussed alongside key scientific achievements and future perspectives.
DOI: 10.6084/m9.figshare.29574626.v1
title: Artificial Neurons, Neuromorphic Cells, and Synthetic Synapses Based on Hydrogen Bonds and Confined Water: Principles, Current Research, Modeling, Applications, Achievements, Scientific Groups, and Prospects

description: This work explores the emerging field of neuromorphic computing systems based on hydrogen bonds and confined water. It analyzes artificial neurons, synthetic synapses, and neuromorphic devices utilizing ionic transport in aqueous environments. The study highlights the unique physical properties of confined water, the role of hydrogen bonding, and the Grotthuss mechanism of proton transport for creating energy-efficient, adaptive, and bio-compatible computing architectures. It reviews current research, advanced materials including nanofluidic diodes, organic and biopolymer memristors, covalent organic frameworks, and modeling approaches such as molecular dynamics and machine learning potentials. Applications in artificial intelligence, bioelectronics, and human-machine interfaces are discussed alongside key scientific achievements and future perspectives.
DOI: 10.15468/dl.mjjq5d
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Premna resinosa",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 158 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017993-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6gtq8d
title: Occurrence Download

description: A dataset containing 123630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 123630 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017958-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.20338245
title: Data and R code for Culex acharistus

description: #Data and R code for: The role of temperature in shaping Culex acharistus mosquitoes (Diptera: Culicidae) life history traits in its southern limit of distribution (Patagonia-Argentina)
#Send for publication July 2022
#Manuscript Authors: Grech MG, Miserendino ML, Almirón WR.
#Author of R code, data curation and management: Grech MG
<br>
DOI: 10.3886/e236081
title: The comparative advantages of HSR networks, AIR networks, and their collaborative effects on the coordinated regional economic development in China

description: The study
examines the role of high-speed rail (HSR)
and air transport (AIR) networks in
promoting coordinated regional economic development (CRED) in China. Existing literature has primarily focused on the
impact of individual transportation modes, while the comparative advantages and
synergistic effects (HA) of HSR and AIR on CRED remain
understudied. Employing multi-dimensional panel data from 2008 to 2023,
covering macro-regional network, provincial network, and city network, the
research reveals the heterogeneous impacts and collaborative potential of these
transportation networks at different spatial scales. Results demonstrate that AIR
significantly enhances CRED at the macro-regional scale, HA
development markedly promotes CRED at the provincial scale, and HSR
significantly strengthens CRED at the city scale. The dose-response
model regression results further indicate that the positive effect of AIR
networks on CRED exhibits stable enhancement with AIR development
at the macro-regional scale; HA's promotive effect increases with its
development at the provincial scale but encounters an upper growth limit; and
at the city scale, HSR’s impact initially rises then declines,
displaying diminishing marginal returns on CRED. Consequently, this
study recommends formulating differentiated transport network planning policies
tailored to specific spatial scales, leveraging the complementary advantages of
HSR and AIR to foster coordinated regional economic development.