cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.11578/1356364
title: Full-wave simulations of ICRF heating regimes in toroidal plasmas with non-Maxwellian distribution functions

description: At the power levels required for significant heating and current drive in magnetically-confined toroidal plasma, modification of the particle distribution function from a Maxwellian shape is likely [T. H. Stix, Nucl. Fusion, 15 737 (1975)], with consequent changes in wave propagation and in the location and amount of absorption. In order to study these effects computationally, both the finite-Larmor-radius and the high-harmonic fast wave (HHFW), versions of the full-wave, hot-plasma toroidal simulation code TORIC [M. Brambilla, Plasma Phys. Control. Fusion 41, 1 (1999) and M. Brambilla, Plasma Phys. Control. Fusion 44, 2423 (2002)], have been extended to allow the prescription of arbitrary velocity distributions of the form f(v||, v_perp, psi , theta). For hydrogen (H) minority heating of a deuterium (D) plasma with anisotropic Maxwellian H distributions, the fractional H absorption varies significantly with changes in parallel temperature but is essentially independent of perpendicular temperature. On the other hand, for HHFW regime with anisotropic Maxwellian fast ion distribution, the fractional beam ion absorption varies mainly with changes in the perpendicular temperature. The evaluation of the wave-field and power absorption, through the full wave solver, with the ion distribution function provided by either aMonte-Carlo particle and Fokker-Planck codes is also examined for Alcator C-Mod and NSTX plasmas. Non-Maxwellian effects generally tends to increase the absorption with respect to the equivalent Maxwellian distribution.
DOI: 10.11577/1365655
title: Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography

description: Please check the README file for more information about the dataset.
DOI: 10.11578/1366453
title: A dynamic magnetic tension force as the cause of failed solar eruptions

description: Coronal mass ejections are solar eruptions driven by a sudden release of magnetic energy stored in the Sun’s corona. In many cases, this magnetic energy is stored in long-lived, arched structures called magnetic flux ropes. When a flux rope destabilizes, it can either erupt and produce a coronal mass ejection or fail and collapse back towards the Sun. The prevailing belief is that the outcome of a given event is determined by a magnetohydrodynamic force imbalance called the torus instability. This belief is challenged, however, by observations indicating that torus-unstable flux ropes sometimes fail to erupt. This contradiction has not yet been resolved because of a lack of coronal magnetic field measurements and the limitations of idealized numerical modelling. Here we report the results of a laboratory experiment that reveal a previously unknown eruption criterion below which torus-unstable flux ropes fail to erupt. We find that such ‘failed torus’ events occur when the guide magnetic field (that is, the ambient field that runs toroidally along the flux rope) is strong enough to prevent the flux rope from kinking. Under these conditions, the guide field interacts with electric currents in the flux rope to produce a dynamic toroidal field tension force that halts the eruption. This magnetic tension force is missing from existing eruption models, which is why such models cannot explain or predict failed torus events.
DOI: 10.11578/1366462
title: Midplane neutral density profiles in the National Spherical Torus Experiment

description: Atomic and molecular density data in the outer midplane of NSTX [Ono et al., Nucl. Fusion 40, 557 (2000)] are inferred from tangential camera data via a forward modeling procedure using the DEGAS 2 Monte Carlo neutral transport code. The observed Balmer-b light emission data from 17 shots during the 2010 NSTX campaign display no obvious trends with discharge parameters such as the divertor Balmer-a emission level or edge deuterium ion density. Simulations of 12 time slices in 7 of these discharges produce molecular densities near the vacuum vessel wall of 2–8 x 10<sup>17</sup> m<sup>-3</sup> and atomic densities ranging from 1 to 7 x 10<sup>16</sup> m<sup>-3</sup>; neither has a clear correlation with other parameters. Validation of the technique, begun in an earlier publication, is continued with an assessment of the sensitivity of the simulated camera image and neutral densities to uncertainties in the data input to the model. The simulated camera image is sensitive to the plasma profiles and virtually nothing else. The neutral densities at the vessel wall depend most strongly on the spatial distribution of the source; simulations with a localized neutral source yield densities within a factor of two of the baseline, uniform source, case. The uncertainties in the neutral densities associated with other model inputs and assumptions are ≤ 50%.
DOI: 10.11578/1366480
title: Phase space effects on fast ion distribution function modeling in tokamaks

description: Integrated simulations of tokamak discharges typically rely on classical physics to model energetic particle (EP) dynamics. However, there are numerous cases in which energetic particles can suffer additional transport that is not classical in nature. Examples include transport by applied 3D magnetic perturbations and, more notably, by plasma instabilities. Focusing on the effects of instabilities, ad-hoc models can empirically reproduce increased transport, but the choice of transport coefficients is usually somehow arbitrary. New approaches based on physics-based reduced models are being developed to address those issues in a simplified way, while retaining a more correct treatment of resonant wave-particle interactions. The kick model implemented in the tokamak transport code TRANSP is an example of such reduced models. It includes modifications of the EP distribution by instabilities in real and velocity space, retaining correlations between transport in energy and space typical of resonant EP transport. The relevance of EP phase space modifications by instabilities is first discussed in terms of predicted fast ion distribution. Results are compared with those from a simple, ad-hoc diffusive model. It is then shown that the phase-space resolved model can also provide additional insight into important issues such as internal consistency of the simulations and mode stability through the analysis of the power exchanged between energetic particles and the instabilities.
DOI: 10.11578/1366495
title: Quasi-linear gyrokinetic predictions of the Coriolis momentum pinch in NSTX

description: This paper presents quasi-linear gyrokinetic predictions of the Coriolis momentum pinch for low aspect-ratio NSTX H-modes where previous experimental measurements were focused. Local, linear calculations predict that in the region of interest (just outside the mid-radius) of these relatively high-beta plasmas, profiles are most unstable to microtearing modes that are only effective in transporting electron energy. However, sub-dominant electromagnetic and electrostatic ballooning modes are also unstable, which are effective at transporting energy, particles and momentum. The quasi-linear prediction of transport from these weaker ballooning modes, assuming they contribute transport in addition to that from microtearing modes in a nonlinear turbulent state, leads to a very small or outward convection of momentum, inconsistent with the experimentally measured inward pinch, and opposite to predictions in conventional aspect ratio tokamaks. Additional predictions of a low beta L-mode plasma, unstable to more traditional electrostatic ion temperature gradient-trapped electron mode instability, show that the Coriolis pinch is inward but remains relatively weak and insensitive to many parameter variations. The weak or outward pinch predicted in NSTX plasmas appears to be at least partially correlated to changes in the parallel mode structure that occur at finite beta and low aspect ratio, as discussed in previous theories. The only conditions identified where a stronger inward pinch is predicted occur either in the purely electrostatic limit or if the aspect ratio is increased. As the Coriolis pinch cannot explain the measured momentum pinch, additional theoretical momentum transport mechanisms are discussed that may be potentially important.
DOI: 10.11578/1366498
title: Exploration of magnetic perturbation effects on advanced divertor configurations in NSTX-U

description: The control of divertor heat loads - both steady state and transient - remains a key challenge for the successful operation of ITER and FNSF. Magnetic perturbations provide a promising technique to control ELMs (transients), but understanding their detailed impact is difficult due to their symmetry breaking nature. One approach for reducing steady state heat loads are so called 'advanced divertors' which aim at optimizing the magnetic field configuration: the snowflake and the (super-)X-divertor. It is likely that both concepts - magnetic perturbations and advanced divertors - will have to work together, and we explore their interaction based on the NSTX-U setup. An overview of different divertor configurations under the impact of magnetic perturbations is presented, and the resulting impact on plasma edge transport is investigated with the EMC3-EIRENE code. Variations in size of the magnetic footprint of the perturbed separatrix are found, which is related to the level of flux expansion on the divertor target. Non-axisymmetric peaking of the heat flux related to the perturbed separatrix is found at the outer strike point, but only in locations where flux expansion is not too large.
DOI: 10.11578/1366722
title: Fusion Nuclear Science Facilities and Pilot Plants Based on the Spherical Tokamak

description: A Fusion Nuclear Science Facility (FNSF) could play an important role in the development of fusion energy by providing the nuclear environment needed to develop fusion materials and components. The spherical torus/tokamak (ST) is a leading candidate for an FNSF due to its potentially high neutron wall loading and modular configuration. A key consideration for the choice of FNSF configuration is the range of achievable missions as a function of device size. Possible missions include: providing high neutron wall loading and fluence, demonstrating tritium self-sufficiency, and demonstrating electrical self-sufficiency. All of these missions must also be compatible with a viable divertor, first-wall, and blanket solution. ST-FNSF configurations have been developed simultaneously incorporating for the first time: (1) a blanket system capable of tritium breeding ratio TBR approximately 1, (2) a poloidal field coil set supporting high elongation and triangularity for a range of internal inductance and normalized beta values consistent with NSTX/NSTX-U previous/planned operation, (3) a long-legged divertor analogous to the MAST-U divertor which substantially reduces projected peak divertor heat-flux and has all outboard poloidal field coils outside the vacuum chamber and superconducting to reduce power consumption, and (4) a vertical maintenance scheme in which blanket structures and the centerstack can be removed independently. Progress in these ST-FNSF missions vs. configuration studies including dependence on plasma major radius R0 for a range 1m to 2.2m are described. In particular, it is found the threshold major radius for TBR = 1 is R0 greater than or equal to 1.7m, and a smaller R0=1m ST device has TBR approximately 0.9 which is below unity but substantially reduces T consumption relative to not breeding. Calculations of neutral beam heating and current drive for non-inductive ramp-up and sustainment are described. An A=2, R0=3m device incorporating high-temperature superconductor toroidal field coil magnets capable of high neutron fluence and both tritium and electrical self-sufficiency is also presented following systematic aspect ratio studies.
DOI: 10.11578/1366751
title: Saturation of Alfven modes in tokamaks

description: Growth of Alfven modes driven unstable by a distribution of high energy particles up to saturation is investigated with a guiding center code, using numerical eigenfunctions produced by linear theory and a numerical high energy particle distribution, in order to make detailed comparison with experiment and with models for saturation amplitudes and the modification of beam profiles. Two innovations are introduced. First, a very noise free means of obtaining the mode-particle energy and momentum transfer is introduced, and secondly, a spline representation of the actual beam particle distribution is used.
DOI: 10.11578/1366987
title: Phase coherence of parametric-decay modes during high-harmonic fast-wave heating in the National Spherical Torus Experiment

description: Third-order spectral analysis, in particular the auto bicoherence, was applied to probe signals from high-harmonic fast-wave heating experiments in the National Spherical Torus Experiment. Strong evidence was found for parametric decay of the 30 MHz radio-frequency (RF) pump wave, with a low-frequency daughter wave at 2.7 MHz, the local majority-ion cyclotron frequency. The primary decay modes have auto bicoherence values around 0.85, very close to the theoretical value of one, which corresponds to total phase coherence with the pump wave. The threshold RF pump power for onset of parametric decay was found to be between 200 kW and 400 kW.
DOI: 10.11578/1367167
title: Compact and multi-view solid state neutral particle analyzer arrays on National Spherical Torus Experiment-Upgrade

description: A compact and multi-view Solid State Neutral Particle Analyzer (SSNPA) diagnostic based on silicon photodiode arrays has been successfully tested on the National Spherical Torus Experiment-Upgrade (NSTX-U). The SSNPA diagnostic provides spatially, temporally, and pitch-angle resolved measurements of fast-ion distribution by detecting fast neutral flux resulting from charge exchange (CX) reactions. The system consists of three 16-channel subsystems: t-SSNPA viewing the plasma mid-radius and neutral beam (NB) line #2 tangentially, r-SSNPA viewing the plasma core and NB line #1 radially and p-SSNPA with no intersection with any NB lines. Due to the setup geometry, the active CX signals of t-SSNPA and r-SSNPA are mainly sensitive to passing and trapped particles respectively. In addition, both t-SSNPA and r-SSNPA utilize three vertically stacked arrays with different filter thickness to obtain coarse energy information. The experimental data show that all channels are operational. The signal to noise ratio is typically larger than 10 and the main noise is x-ray induced signal. The active and passive CX signals are clearly observed on t-SSNPA and r-SSNPA during NB modulation. The SSNPA data also indicate significant losses of passing particles during sawteeth, while trapped particles are weakly affected. Fluctuations up to 120 kHz, have been observed on SSNPA, and they are strongly correlated with magnetohydrodynamics (MHD) instabilities.
DOI: 10.11578/1367890
title: Overview of NSTX Upgrade Initial Results and Modelling Highlights

description: The National Spherical Torus Experiment (NSTX) has undergone a major upgrade, and the NSTX Upgrade (NSTX-U) Project was completed in the summer of 2015. NSTX-U first plasma was subsequently achieved, diagnostic and control systems have been commissioned, H-Mode accessed, magnetic error fields identified and mitigated, and the first physics research campaign carried out. During 10 run weeks of operation, NSTX-U surpassed NSTX-record pulse-durations and toroidal fields, and high-performance ~1MA H-mode plasmas comparable to the best of NSTX have been sustained near and slightly above the n=1 no-wall stability limit and with H-mode confinement multiplier H98y2 above 1. Transport and turbulence studies in L-mode plasmas have identified the coexistence of at least two ion-gyro-scale turbulent micro-instabilities near the same radial location but propagating in opposite (i.e. ion and electron diamagnetic) directions. These modes have the characteristics of ion-temperature gradient and micro-tearing modes, respectively, and the role of these modes in contributing to thermal transport is under active investigation. The new second more tangential neutral beam injection was observed to significantly modify the stability of two types of Alfven Eigenmodes. Improvements in offline disruption forecasting were made in the areas of identification of rotating MHD modes and other macroscopic instabilities using the Disruption Event Characterization and Forecasting (DECAF) code. Lastly, the Materials Analysis and Particle Probe (MAPP) was utilized on NSTX-U for the first time and enabled assessments of the correlation between boronized wall conditions and plasma performance. These and other highlights from the first run campaign of NSTX-U are described.
DOI: 10.17038/1371460
title: Niche and neutral processes both shape community structure in parallelized, aerobic, single carbon-source enrichments

description: We present DNA sequence data in FASTA-formatted files from aerobic environmental microcosms inoculated with a sole carbon source. DNA sequences are of 16S rRNA genes present in DNA extracted from each microcosm along with the environmental samples (soil, water) used to inoculate them. These samples were sequenced using the Illumina MiSeq platform at the Environmental Sample Preparation and Sequencing Facility at Argonne National Laboratory. This data is compatible with standard microbiome analysis pipelines (e.g., QIIME, mothur, etc.).
DOI: 10.11578/1372474
title: Influence of Molecular Shape on the Thermal Stability and Molecular Orientation of Vapor-Deposited Organic Semiconductors

description: High thermal stability and anisotropic molecular orientation enhance the performance of vapor-deposited organic semiconductors, but controlling these properties is a challenge in amorphous materials. To understand the influence of molecular shape on these properties, vapor-deposited glasses of three disk-shaped molecules were prepared. For all three systems, enhanced thermal stability is observed for glasses prepared over a wide range of substrate temperatures and anisotropic molecular orientation is observed at lower substrate temperatures. For two of the disk-shaped molecules, atomistic simulations of thin films were also performed and anisotropic molecular orientation was observed at the equilibrium liquid surface. We find that the structure and thermal stability of these vapor-deposited glasses results from high surface mobility and partial equilibration toward the structure of the equilibrium liquid surface during the deposition process. For the three molecules studied, molecular shape is a dominant factor in determining the anisotropy of vapor-deposited glasses.
DOI: 10.13139/olcf/1410993
title: Ultrafast current imaging by Bayesian inversion

description: Spectroscopic measurements of current-voltage curves in scanning probe microscopy is the earliest and one of the most common methods for characterizing local energy-dependent electronic properties, providing insight into superconductive, semiconductor, and memristive behaviors. However, the quasistatic nature of these measurements renders them extremely slow. Here, we demonstrate a fundamentally new approach for dynamic spectroscopic current imaging via full information capture and Bayesian inference analysis. This "general-mode I-V"method allows three orders of magnitude faster rates than presently possible. The technique is demonstrated by acquiring I-V curves in ferroelectric nanocapacitors, yielding &gt;100,000 I-V curves in &lt;20 minutes. This allows detection of switching currents in the nanoscale capacitors, as well as determination of dielectric constant. These experiments show the potential for the use of full information capture and Bayesian inference towards extracting physics from rapid I-V measurements, and can be used for transport measurements in both atomic force and scanning tunneling microscopy. The data was analyzed using pycroscopy - an open-source python package available at https://github.com/pycroscopy/pycroscopy
DOI: 10.11577/1413670
title: Crystal Structures of Human Orexin 2 Receptor Bound to the Subtype-Selective Antagonist EMPA

description: Please check the README file inside the metadata directory for more information about the dataset.
DOI: 10.11578/1413970
title: Vapor-Deposited Glasses with Long-Range Columnar Liquid Crystalline Order

description: Anisotropic molecular packing, particularly in highly ordered liquid crystalline arrangements, has the potential for optimizing performance in organic electronic and optoelectronic applications. Here we show that physical vapor deposition can be used to prepare highly organized glassy solids of discotic liquid crystalline systems. Using grazing incidence X-ray scattering, atomic force microscopy, and UV–vis spectroscopy, we compare three systems: a rectangular columnar liquid crystal, a hexagonal columnar liquid crystal, and a nonmesogen. The packing motifs accessible by vapor deposition are highly organized for the liquid crystalline systems with columns propagating either in plane or out-of-plane depending upon the substrate temperature during deposition. The structures formed at a given substrate temperature can be understood as resulting from partial equilibration toward the structure of the equilibrium liquid crystal surface during the deposition process.
DOI: 10.18138/1419641
title: Public Data Set: Initiation and Sustainment of Tokamak Plasmas with Local Helicity Injection as the Majority Current Drive

description: This public data set contains openly-documented, machine readable digital research data corresponding to figures published in J.M. Perry et al., 'Initiation and Sustainment of Tokamak Plasmas with Local Helicity Injection as the Majority Current Drive,' Nuclear Fusion 58, 096002 (2018).
DOI: 10.21947/1420835
title: Radar - ESRL Wind Profiler with RASS, Wasco Airport - Derived Data

description: Profiles of turbulence dissipation rate for 15-minute intervals, time-stamped at the beginning of the 15-minute period, during the final 30 minutes of each hour. During that time, the 915-MHz wind profiling radar was in an optimized configuration with a vertically pointing beam only for measuring accurate spectral widths of vertical velocity. A bias-corrected dissipation rate also was profiled (described in McCaffrey et al. 2017). Hourly files contain two 15-minute profiles.
DOI: 10.18141/1432948
title: Predictive Modeling of CO2 Sequestration and Storage in Deep Saline Sandstone Reservoirs: Sensitivity Analysis of Mineral Rates in Reactive Transport

description: Carbon Storage TRS
DOI: 10.11577/1433848
title: Femtosecond X-ray coherent diffraction of aligned amyloid fibrils on low background graphene
DOI: 10.11577/1435597
title: Ultrafast nonthermal heating of water initiated by an X-ray Free-Electron Laser

description: Please check the README file for more information about the dataset.
DOI: 10.11577/1435599
title: Correlations in scattered x-ray laser pulses reveal nanoscale structural features of viruses

description: Please check the publication for more information about the dataset.
DOI: 10.11577/1437269
title: Free-Electron Laser based Multiple Particle Fluctuation Scattering Data
DOI: 10.25442/hku.14908245
title: Supporting data for "Effects of construction project social capital on individual safety performance: The mediating role of work engagement"

description: The dataset includes the interview guidelines of both pre-study and respondent validation phases of the study and the transcripts of the interviews. Also, the questionnaire and the raw dataset of the quantitative phase has also been included in the uploaded files.