cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14737869
title: Leaf nutrient and isotope data

description: Data from a subset of phytomter leaves measuring the N and C content and the delta13C signature<br>
DOI: 10.6084/m9.figshare.14737869.v2
title: Leaf nutrient and isotope data

description: Data from a subset of phytomter leaves measuring the N and C content and the delta13C signature<br>
DOI: 10.6084/m9.figshare.14737869.v1
title: Lead nutrient and isotope data

description: Data from a subset of phytomter leaves measuring the N and C content and the delta13C signature<br>
DOI: 10.18119/n9s02p
title: String Network - NAFLD and O. aristatus' bioactive compounds
DOI: 10.5281/zenodo.4903484
title: Supplementary Files for bioMED SOT 0606

description: Table S1, Detailed informative data of all collected samples. Table S2, The whole deregulated GO terms of serous ovarian tumors. Table S3, The whole dysfunctional GO pathways for serous ovarian tumors. Table S4, All IHC scores for relevant biomarkers of clinical samples.
DOI: 10.5281/zenodo.4903483
title: Supplementary Files for bioMED SOT 0606

description: Table S1, Detailed informative data of all collected samples. Table S2, The whole deregulated GO terms of serous ovarian tumors. Table S3, The whole dysfunctional GO pathways for serous ovarian tumors. Table S4, All IHC scores for relevant biomarkers of clinical samples.
DOI: 10.5281/zenodo.4903494
title: Neural Network Fitted Potential Energy Surface for Ozone

description: MRCI-F12/VTZ-F12 potential energy surface Basic NN fit - (very poor) PES-Learn hyperparameter optimised neural network fit
DOI: 10.5281/zenodo.4903493
title: Neural Network Fitted Potential Energy Surface for Ozone

description: MRCI-F12/VTZ-F12 potential energy surface Basic NN fit - (very poor) PES-Learn hyperparameter optimised neural network fit
DOI: 10.5281/zenodo.4767969
title: Metabolomic profiling identifies complex lipid species and amino acid analogues associated with response to weight loss interventions

description: Obesity is an epidemic internationally. While weight loss interventions are efficacious, they are compounded by heterogeneity with regards to clinically relevant metabolic responses. Thus, we sought to identify metabolic biomarkers that are associated with beneficial metabolic changes to weight loss and which distinguish individuals with obesity who would most benefit from a given type of intervention. Liquid chromatography mass spectrometry-based profiling was used to measure 765 metabolites in baseline plasma from three different weight loss studies: WLM (behavioral intervention, N=443), STRRIDE-PD (exercise intervention, N=163), and CBD (surgical cohort, N=125). The primary outcome was percent change in insulin resistance (as measured by the Homeostatic Model Assessment of Insulin Resistance [%∆HOMA-IR]) over the intervention. Overall, 92 individual metabolites were associated with %∆HOMA-IR after adjustment for multiple comparisons. Concordantly, the most significant metabolites were triacylglycerols (TAGs; p=2.3e-5) and diacylglycerols (DAGs; p=1.6e-4), with higher baseline TAG and DAG levels associated with a greater improvement in insulin resistance with weight loss. In tests of heterogeneity, 50 metabolites changed differently between weight loss interventions; we found amino acids, peptides, and their analogues to be most significant (4.7e-3) in this category. Our results highlight novel metabolic pathways associated with heterogeneity in response to weight loss interventions, and related biomarkers which could be used in future studies of personalized approaches to weight loss interventions.
description: NAB and SHS are funded by American Heart Association Strategically Focused Research Network 17SFRN33670990 and 17SFRN33700155. LCK, CBC, AAD, and SHS are funded by NHLBI 5R01HL127009. REG is funded by NIDDK 5R01DK081572.
DOI: 10.5281/zenodo.4767968
title: Metabolomic profiling identifies complex lipid species and amino acid analogues associated with response to weight loss interventions

description: Obesity is an epidemic internationally. While weight loss interventions are efficacious, they are compounded by heterogeneity with regards to clinically relevant metabolic responses. Thus, we sought to identify metabolic biomarkers that are associated with beneficial metabolic changes to weight loss and which distinguish individuals with obesity who would most benefit from a given type of intervention. Liquid chromatography mass spectrometry-based profiling was used to measure 765 metabolites in baseline plasma from three different weight loss studies: WLM (behavioral intervention, N=443), STRRIDE-PD (exercise intervention, N=163), and CBD (surgical cohort, N=125). The primary outcome was percent change in insulin resistance (as measured by the Homeostatic Model Assessment of Insulin Resistance [%∆HOMA-IR]) over the intervention. Overall, 92 individual metabolites were associated with %∆HOMA-IR after adjustment for multiple comparisons. Concordantly, the most significant metabolites were triacylglycerols (TAGs; p=2.3e-5) and diacylglycerols (DAGs; p=1.6e-4), with higher baseline TAG and DAG levels associated with a greater improvement in insulin resistance with weight loss. In tests of heterogeneity, 50 metabolites changed differently between weight loss interventions; we found amino acids, peptides, and their analogues to be most significant (4.7e-3) in this category. Our results highlight novel metabolic pathways associated with heterogeneity in response to weight loss interventions, and related biomarkers which could be used in future studies of personalized approaches to weight loss interventions.
description: NAB and SHS are funded by American Heart Association Strategically Focused Research Network 17SFRN33670990 and 17SFRN33700155. LCK, CBC, AAD, and SHS are funded by NHLBI 5R01HL127009. REG is funded by NIDDK 5R01DK081572.
DOI: 10.6084/m9.figshare.12410522.v1
title: Data file 3 - Sobek analysis summary

description: Sobek summary table.<strong>- total.contigs</strong>: total number of contigs in transcriptome,<b>- never.suspected</b>: number of transcripts that were never suspected of being a cross-contamination,<b>- nb.suspects</b>: number of transcripts that were suspected of being a cross-contamination,<b>- nb.clean</b>, number of transcripts whose origin is from the focal sample <strong>- nb.lowcov</strong>: number of transcripts whose expression levels are too low in all samples,- <strong>nb.overexp</strong>: number of transcripts whose expression levels are very high in at least 3 samples (often reflect highly conserved genes such as ribosomal gene, or external contamination shared by several samples),<strong>- nb.dubious</strong>: number of transcripts whose expression levels are too close between focal and alien samples to determine the true origin of the transcript.<strong>- nb.contam</strong>: number of transcripts whose origin is from an alien sample of the same experiment.
DOI: 10.6084/m9.figshare.14727411.v1
title: Data file 1 - Consolidation table

description: Table describing the way samples were clustered (at genus level) and consolidated (or not).<br>Color code: <br>- uncombined samples: yellow and green (alternate color for readability)<br>- combined samples: orange and pink (alternate color for readability)<br>NB: colors are not displayed in the preview!<br><br>Combined samples inside a cluster are in contiguous cells and highlighted with the same color. The resulting transcriptomes holds the name of the last common ancestor of the combined samples. It is possible to have multiple combination per cluster (hence the alternate color). If a sample was not combined (singleton), the original name (with the sample number MMETSPXXXX) was kept.<br><br>
DOI: 10.5281/zenodo.4903505
title: Mathematics Education for Young Children in Japan: An Ethnographic Study (Observation Notes at Preschools in Japan, 2018)

description: These observation notes were created as part of a research project that examines mathematics education for young children aged 3 to 8 years old in contemporary Japan. The observation notes presented here were made by the researcher, Peter Cave, following observations conducted between April and August 2018. Observation notes were typed up from memory on the same day as the observation, making use of handwritten memos taken by the researcher during observation. This version of the notes has been edited with a view to making them as clear as possible for readers, and interpretative comments recorded by the researcher have been removed. The observations were conducted at preschools – either kindergartens (<em>yōchien</em>), day-care centres (<em>hoikuen</em>), or early childhood education and care centres (<em>nintei kodomo-en</em>) which offer both kindergarten and day-care programmes – in two cities in different prefectures in central Japan. The cities have been given the pseudonyms of Wakahashi and Sakura. All names of preschools are also pseudonymous. Explanatory comments by the researcher are provided in square brackets or in footnotes, while some important Japanese words and phrases are transliterated in italics.
description: This research was supported by the Daiwa Anglo-Japanese Foundation under Daiwa Foundation Small Grant 6147/12859; by the Japan Foundation Endowment Committee under Grant Number 598 1017; and by the Great Britain Sasakawa Foundation under Grant Number 5308.
DOI: 10.5281/zenodo.4903504
title: Mathematics Education for Young Children in Japan: An Ethnographic Study (Observation Notes at Preschools in Japan, 2018)

description: These observation notes were created as part of a research project that examines mathematics education for young children aged 3 to 8 years old in contemporary Japan. The observation notes presented here were made by the researcher, Peter Cave, following observations conducted between April and August 2018. Observation notes were typed up from memory on the same day as the observation, making use of handwritten memos taken by the researcher during observation. This version of the notes has been edited with a view to making them as clear as possible for readers, and interpretative comments recorded by the researcher have been removed. The observations were conducted at preschools – either kindergartens (<em>yōchien</em>), day-care centres (<em>hoikuen</em>), or early childhood education and care centres (<em>nintei kodomo-en</em>) which offer both kindergarten and day-care programmes – in two cities in different prefectures in central Japan. The cities have been given the pseudonyms of Wakahashi and Sakura. All names of preschools are also pseudonymous. Explanatory comments by the researcher are provided in square brackets or in footnotes, while some important Japanese words and phrases are transliterated in italics.
description: This research was supported by the Daiwa Anglo-Japanese Foundation under Daiwa Foundation Small Grant 6147/12859; by the Japan Foundation Endowment Committee under Grant Number 598 1017; and by the Great Britain Sasakawa Foundation under Grant Number 5308.
DOI: 10.6084/m9.figshare.14737956
title: Delphi-1.First-Round-Data.xlsx

description: Delphi First Round Data
DOI: 10.6084/m9.figshare.14737956.v1
title: Delphi-1.First-Round-Data.xlsx

description: Delphi First Round Data
DOI: 10.34740/kaggle/dsv/2306078
title: Vietnam SARS-CoV-2 | COVID-19 Data
DOI: 10.24431/rw1k589
title: R code and network files for replicating qualitative modeling analysis of the potential response of blue king crab to management interventions and climate change

description: In this study, we recovered cruise data from 1983-84 that quantified the density and habitat associations for every life-history stage of the blue king crab from larvae to adults in the Pribilof Islands, Alaska. We combined information from published studies, recovered data and stakeholder input. We used a qualitative network model (QNM) to mathematically formalize the conceptual model of systems and link changes in blue king crab populations to key ecological and environmental variables. The QNM approach allowed us to make qualitative predictions about the response of the stock to management actions and environmental change. The data set includes R scripts for replicating model analyses, results, and figures. The script "bkcQNM.R" steps the user through the model simulations and post-processing of predicted outcomes, and includes additional descriptions of the functions used in the analysis. The scripts "dia.R", "communityListRun.R", "community.R", contain functions that are called from the "bkcQNM.R" script. The file "BKC_QNM_SuppMat.dia" can be opened with the freeware program "Dia" and contains the blue king crab qualitative network model. Interested users can alter the network using Dia, and use these scripts to generate a new analysis or explore different management/climate scenarios.
DOI: 10.6084/m9.figshare.14417882
title: Kittendorf and Dantzer Data.xlsx

description: This file contains all the data published in the manuscript titled "Urban fox squirrels exhibit tolerance to humans but respond to stimuli from natural predators" by Anna Kittendorf and Ben Dantzer
DOI: 10.5281/zenodo.4722723
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.4722722
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5519/qd.hd7fi2j4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1548 records)
DOI: 10.5281/zenodo.4899933
title: Open-access dataset for "Superconducting contacts to a monolayer semiconductor".

description: This dataset contains the measurement data and its readme.txt of the main manuscript and supplemental information of the publication "Superconducting contacts to a monolayer semiconductor".
DOI: 10.5281/zenodo.4899932
title: Open-access dataset for "Superconducting contacts to a monolayer semiconductor".

description: This dataset contains the measurement data and its readme.txt of the main manuscript and supplemental information of the publication "Superconducting contacts to a monolayer semiconductor".
DOI: 10.25345/c52v5n
title: MassIVE MSV000087575 - LC-MS/MS-based in vitro kinase assays performed with recombinant maltose-binding protein-tagged P. falciparum calcium dependent protein kinase 4 using synthetic peptides as substrates
title: In vitro kinase assays were performed with recombinant maltose-binding protein (MBP) tag-fused PfCDPK4 protein using synthetic peptides as substrates. Kinase reaction buffer contained CaCl2 or the calcium chelator EGTA. Triplicate reactions with either the CaCl2 buffer or the EGTA buffer were performed in parallel and the peptides were detected and quantified by LC-MS/MS. The suitability of a peptide as a substrate for PfCDPK4 was quantified as the depletion of the unmodified peptide as it was converted to phosphopeptide. Additionally, autophosphorylation of PfCDPK4 was assessed by performing the reaction in the absence of substrates followed by tryptic digest and LC-MS/MS of the resulting peptides to identify phosphorylation sites.
DOI: 10.21227/sthb-kq30
title: Social Media Analytics of the Internet of Things

description: The Internet of Things technology offers convenience and innovation in areas such as smart homes and smart cities. Internet of Things solutions require careful management of devices and the risk mitigation of potential vulnerabilities within cyber-physical systems. The Internet of Things concept, its implementations and applications are frequently discussed on social media platforms. This research provides thematic analysis of contemporary conversations regarding Internet of Things occurring on the Twitter platform. Tweets can be analyzed to evaluate the volume and variety of conversations related to a specific topic. We have reviewed 684,503 tweets collected in a two-week period. We have identified the most mentioned industries with interest in Internet of Things. The healthcare industry is the most mentioned within the collection of tweets. This is not surprising as the current Covid-19 pandemic is driving significant social media discussions. Using unsupervised clustering of tweets by term frequency, the top trend was found to be data science. Additional findings are discussed further.
DOI: 10.6084/m9.figshare.14738037
title: Meta-evaluation of primary health care evaluative studies: Shopping Review protocol

description: This is a scoping review protocol, a type of study designed to answer broad research questions with less restrictive selection criteria. The inclusion of scientific articles and the gray literature aim to map key concepts, types of evidence, and research gaps, systematically synthesizing the existing knowledge on a topic. The study will be developed according to Arksey and O'Malley and Levac et al. steps (Formulation of research questions; Identification of relevant studies; Study selection; Data extraction and coding; Analysis and interpretation of results; Consultation with stakeholders). Will based on the Joanna Briggs Institute manual (JBI), and guided by the PRISMA Extension for Scoping Reviews (PRISMA-ScR).
DOI: 10.6084/m9.figshare.14738037.v1
title: Meta-evaluation of primary health care evaluative studies: Shopping Review protocol

description: This is a scoping review protocol, a type of study designed to answer broad research questions with less restrictive selection criteria. The inclusion of scientific articles and the gray literature aim to map key concepts, types of evidence, and research gaps, systematically synthesizing the existing knowledge on a topic. The study will be developed according to Arksey and O'Malley and Levac et al. steps (Formulation of research questions; Identification of relevant studies; Study selection; Data extraction and coding; Analysis and interpretation of results; Consultation with stakeholders). Will based on the Joanna Briggs Institute manual (JBI), and guided by the PRISMA Extension for Scoping Reviews (PRISMA-ScR).
DOI: 10.5281/zenodo.4903784
title: Data from: "Skull shape and Bergmann's rule in mammals: hints from Old World porcupines"

description: Geo-referenced morphometric data for five Hystrix species.<br>
description: {"references": ["Mori, E., Ancillotto, L., Lovari, S., Russo, D., Nerva, L., Mohamed, W.F., Motro, Y., Di Bari, P. and Plebani, M. (2019), Skull shape and Bergmann's rule in mammals: hints from Old World porcupines. J Zool, 308: 47-55. https://doi.org/10.1111/jzo.12651"]}
DOI: 10.5281/zenodo.4903783
title: Data from: "Skull shape and Bergmann's rule in mammals: hints from Old World porcupines"

description: Geo-referenced morphometric data for five Hystrix species.<br>
description: {"references": ["Mori, E., Ancillotto, L., Lovari, S., Russo, D., Nerva, L., Mohamed, W.F., Motro, Y., Di Bari, P. and Plebani, M. (2019), Skull shape and Bergmann's rule in mammals: hints from Old World porcupines. J Zool, 308: 47-55. https://doi.org/10.1111/jzo.12651"]}
DOI: 10.5281/zenodo.4270623
title: Precipitation and Temperature Anomalies from MERRA-2 dataset

description: Anomalies in Precipitation and Temperature for tiles around the globe. Data derived from the reanalysis MERRA-2 project [1]. The dataset covers the period from 1980 to 2018, between 80ºN and 80ºS. The spatial resolution is 1.0º x 1.0º resulting in 45,792 tiles and a time resolution of 7 days (by averaging the values over each week). Precipitation time-series were re-scaled by applying a logarithmic function to all values. To discount seasonality effects, we averaged temperature and precipitation values for each of the 365 calendar days. We considered the interval from 1 January 1980 through 28 February 2018 as the climatic period for which the long-term averages were computed. The anomalies are then obtained by subtracting for each day the respective average temperature or precipitation from the climatic period (for example, the 1 January 1998 anomaly is computed as the value for that day minus the average of all January 1 values between 1980 and 2018). To process the data, use the code available in: https://github.com/filipinascimento/teleconnectionsgranger/ http://arxiv.org/abs/2012.03848 [1] A. Molod, L. Takacs, M. Suarez, and J. Bacmeister, “Development of the geos-5 atmospheric general circulation model: evolution from merra to merra2,” Geoscientific Model Development 8, 1339–1356 (2015).
description: This research was developed using the computational resources from the Center for Mathematical Sciences Applied to Industry (CeMEAI) funded by the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) under Grant No. 2013/07375-0. D.A.V.O acknowledges FAPESP Grants 2016/23698-1, 2018/24260-5, and 2019/26283-5. This material is based upon work supported by the National Science Foundation under Grant No. CNS-0521433. Support for B.K. was provided in part by the National Science Foundation through agreement CBET-1931641, the Indiana University Environmental Resilience Institute, and the {\it Prepared for Environmental Change} Grand Challenge initiative. This work was based on research supported by the U.S. Department of Energy (DOE), Office of Science, Biological and Environmental Research, as part of the Regional and Global Model Analysis program. The Pacific Northwest National Laboratory is operated for the US Department of Energy by Battelle Memorial Institute under contract DE-AC05-76RL01830
description: {"references": ["Filipi N Silva, , Didier A. Vega-Oliveros, Xiaoran Yan, Alessandro Flammini, Filippo Menczer, Filippo Radicchi, Ben Kravitz, and Santo Fortunato. \"Detecting climate teleconnections with Granger causality.\" (2020). http://arxiv.org/abs/2012.03848"]}