cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60566/28ga7-fpt90
title: Data in GLAM

description: Imagery Products
There are different imagery products available on the GLAM platform.
Vegetation Indices

MODIS/Terra NDVI 8-Day
MODIS/Terra NDVI 16 Day
MODIS/Terra Near Real Time (NRT) NDVI
MODIS/Aqua NDVI 8 Day
MODIS/Aqua NDVI 16 Day
VIIRS NDVI 8 Day
MODIS/Terra NDWI 8 Day
Other Products

CHIRPS Precipitation
Copernicus Soil Water Index
MERRA-2 Mean Temperature
More information about temporal and spatial resolutions and other characteristics of the data can be founds in the GLAM web application.
 
Crop Masks
The primary crop mask data used by the GLAM system is from the GEOGLAM Global Best Available Crop Specific Masks (GEOGLAM-BACS).
The GEOGLAM Best Available Crop Specific masks (BACS) cover the major production and export countries for wheat, maize, rice, and soybeans, in the context of the G20 Global Agriculture Monitoring Program, GEOGLAM.
 
Boundary Layers
Administrative boundaries used in the GLAM system are courtesy of geoBoundaries. The geoBoundaries is world's largest open database of administrative boundaries at different levels. More information about these layers can be found at geoBoundaries.
DOI: 10.57745/oxvi2u
title: Vanera_files_explanations.pdf

description: Meaning of the tabs, columns and cells in the Vanera_birds_habitat.ods file and of the figures and maps of the Vanera_maps.pdf file
DOI: 10.57745/ekeu3v
title: Vanera_birds_habitat.ods

description: Point count surveys of breeding birds in the Vanera valley, Eastern Pyrenees, from 1981 to 1985, and associated habitat descriptors
DOI: 10.57745/hhcjtn
title: Vanera_maps.pdf

description: Vegetation types found in the study area and location of the point counts on a topographic map
DOI: 10.57745/lal5ie
title: Vanera_habitat.tab

description: :unav
DOI: 10.57745/evzh5d
title: Vanera_birds_1984.tab

description: :unav
DOI: 10.57745/u7wiyi
title: Vanera_birds_1985.tab

description: :unav
DOI: 10.57745/ushzbm
title: Vanera_birds_1983.tab

description: :unav
DOI: 10.57745/vayrxv
title: Vanera_birds_1981.tab

description: Point count surveys of breeding birds in the Vanera valley, Eastern Pyrenees, from 1981 to 1985, and associated habitat descriptors
DOI: 10.5281/zenodo.10477274
title: Weather_data

description: Dataset containing information about Weather data Includes air_temp, Irradiation, wind_speed
DOI: 10.5281/zenodo.10552047
title: Weather_data

description: Dataset containing information about Weather data Includes air_temp, Irradiation, wind_speed
DOI: 10.6084/m9.figshare.24975591.v1
title: Additional data for the manuscript "Genetic barriers more than environmental associations explain Serratia marcescens population structure"

description: Here the source data produced in the main analyses performed in the study associated to the manuscript "Genetic barriers more than environmental associations explain Serratia marcescens population structure". Files are separated in subfolders corresponding to the main analyses performed in the study. Among the data, there are:The coreSNP alignment, phylogenetic tree and Mash distances used for the clustering analysis.The table with stratified Chi-squared residuals (see Methods in the manuscript) used to determine associations between isolation sources and phylogenetic clusters.Table with frequency of genes associated to clusters. Cluster-specific orthologs and table with Youden scores and <i>S. marcescens</i> specificity for each ortholog, along with the output table of the marker genes found in MGnify metagenomic samples containing <i>S. marcescens.</i>Alingments and phylogenetic trees of 1062 core genes used for the HGT analysis, SNP alignment and phylogenetic tree for the strain subset used in these analyses, HGT-detection tool output, output of R-M systems identified and strain cluster table produced in the R-M analysis.<br>
DOI: 10.6084/m9.figshare.25041644
title: Data and code for landscape fuel moisture manuscript analyses, published Fire Ecology 2024

description: Data and code used in the presentation of this manuscript published by Fire Ecology in 2024.Data includes:Field collected fuel moisture data and site attributes: fmc_allMicrometeorological and landscape factors used to model landscape controls on fuel moisture: met_fmc_landscape & lm_metVariance outputs from models used in deviance partition plots: variance_R2 & variance_labelsCode includes:Fuel moisture models: landscape_fmc_2024_models.RDeviance partition code: landscape_fmc_2024_deviance-partitioning.RSpatial autocorrelation tests: testing spatial autocorrelation.R
DOI: 10.57745/bynj2u
title: README.pdf

description: :unav
DOI: 10.57745/fyygkx
title: Vanera_birds_1982.tab

description: :unav
DOI: 10.6084/m9.figshare.25041674
title: <b>Training Interprofessional Teams in Geriatric Emergency Medicine: A Modified Team-Based Learning Approach</b>

description: Appendix 1. MCQsAppendix 2. ScenariosAppendix 3. Feedback forms
DOI: 10.6084/m9.figshare.25041674.v1
title: <b>Training Interprofessional Teams in Geriatric Emergency Medicine: A Modified Team-Based Learning Approach</b>

description: Appendix 1. MCQsAppendix 2. ScenariosAppendix 3. Feedback forms
DOI: 10.5517/ccdc.csd.cc1zpc23
title: CCDC 1837775: Experimental Crystal Structure Determination

description: Related Article: Jianbo Xiong, Xinyue Li, Chunqing Yuan, Sergey Semin, Zhaoquan Yao, Jialiang Xu, Theo Rasing, Xian-He Bu|2018|Mater. Chem. Front.|2|2263|doi:10.1039/C8QM00375K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ffnbw
title: CCDC 2247448: Experimental Crystal Structure Determination

description: Related Article: Yu-Bo Huang, Jun-Qiu Li, Wen-Huang Xu, Wenwei Zheng, Xiaopeng Zhang, Kai-Ge Gao, Tianchi Ji, Taisuke Ikeda, Takumi Nakanishi, Shinji Kanegawa, Shu-Qi Wu, Sheng-Qun Su, Osamu Sato|2023|J.Am.Chem.Soc.|146|201|doi:10.1021/jacs.3c07545
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ffncx
title: CCDC 2247449: Experimental Crystal Structure Determination

description: Related Article: Yu-Bo Huang, Jun-Qiu Li, Wen-Huang Xu, Wenwei Zheng, Xiaopeng Zhang, Kai-Ge Gao, Tianchi Ji, Taisuke Ikeda, Takumi Nakanishi, Shinji Kanegawa, Shu-Qi Wu, Sheng-Qun Su, Osamu Sato|2023|J.Am.Chem.Soc.|146|201|doi:10.1021/jacs.3c07545
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zpc12
title: CCDC 1837774: Experimental Crystal Structure Determination

description: Related Article: Jianbo Xiong, Xinyue Li, Chunqing Yuan, Sergey Semin, Zhaoquan Yao, Jialiang Xu, Theo Rasing, Xian-He Bu|2018|Mater. Chem. Front.|2|2263|doi:10.1039/C8QM00375K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zpc01
title: CCDC 1837773: Experimental Crystal Structure Determination

description: Related Article: Jianbo Xiong, Xinyue Li, Chunqing Yuan, Sergey Semin, Zhaoquan Yao, Jialiang Xu, Theo Rasing, Xian-He Bu|2018|Mater. Chem. Front.|2|2263|doi:10.1039/C8QM00375K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.25041686
title: Non-linear Mendelian randomization doubly-ranked method BMI mortality summary statistics

description: Genetic associations with BMI and with mortality outcomes in UK Biobank used to perform non-linear Mendelian randomization investigations using the doubly-ranked method
DOI: 10.6084/m9.figshare.25041686.v1
title: Non-linear Mendelian randomization doubly-ranked method BMI mortality summary statistics

description: Genetic associations with BMI and with mortality outcomes in UK Biobank used to perform non-linear Mendelian randomization investigations using the doubly-ranked method
DOI: 10.15468/o3tmyw
title: Occurrence of bees along grazing and agricultural gradients in Northern Tanzania

description: Data were collected in 40 study sites distributed along grazing and agricultural gradients in the study area intermittently from August to December 2018. A paired patch study design was adopted in each site, whereby two 50 x 50 m plots were established for bee sampling. We sampled bees using a combination of pan traps and sweep-netting techniques, which have successfully been used for sampling bees in the Kilimanjaro region and other parts of the world. In each plot, four UV-reflecting pan trap clusters (each with yellow, white, and blue) traps were set and left in the field for 48 hours. We also conducted a transect walk with sweep nets to sample bee faunal whereby two researchers were actively collecting bees for two hours per site. The collected bees were temporarily stored in 70% ethanol before dried, pinned and later identified by the taxonomists to species level. Data collection were made possible through the Bee-pollinator Monitoring Project, Tanzania, implemented by the College of African Wildlife Management, Mweka, under financial support from the JRS Biodiversity Foundation, USA.
DOI: 10.5066/p92maa6z
title: Depth to frozen soil measurements at APEX, 2008-2023

description: Depth to frozen soil measurements taken by a variety of collaborators at the Alaskan Peatland EXeriment (APEX) bog/permafrost plateau site. Data is from 2018 - 2023.
DOI: 10.6084/m9.figshare.24186836.v1
title: Sustainable construction projects management in the AEC industry: analysis and visualization

description: Within the last decade, sustainable construction projects (SCPs) management has become a hot topic in the architecture, engineering, and construction (AEC) industry covering from building materials to the construction process. This study aims to systematically analyze literature concerning SCPs management between 2000 and October 2022 to improve the researchers’ overall understanding of SCPs management. From an objective analysis of co-occurrence keywords obtained by scientometric analysis, this study visualizes and conducts a detailed discussion about active studies and research trends. After discussing environmental, economic, and social sustainability indicators and their integration, the methods for improving SCPs management are summarized by a theoretical model. These methods include waste management, energy management, construction materials management, low-carbon management, green rating system, sustainable design, lean construction, knowledge management, capability building, value management, and implementation of new technology. Finally, future research directions are proposed, such as the social sustainability of different phases, the improvement of green rating systems, the development of green technologies, the collaboration of normative guidelines from different countries, and so on. This scientometric review explains the state-of-the-art research of SCPs management and encourages more interdisciplinary research involving relevant sustainability areas.
DOI: 10.6084/m9.figshare.24186836
title: Sustainable construction projects management in the AEC industry: analysis and visualization

description: Within the last decade, sustainable construction projects (SCPs) management has become a hot topic in the architecture, engineering, and construction (AEC) industry covering from building materials to the construction process. This study aims to systematically analyze literature concerning SCPs management between 2000 and October 2022 to improve the researchers’ overall understanding of SCPs management. From an objective analysis of co-occurrence keywords obtained by scientometric analysis, this study visualizes and conducts a detailed discussion about active studies and research trends. After discussing environmental, economic, and social sustainability indicators and their integration, the methods for improving SCPs management are summarized by a theoretical model. These methods include waste management, energy management, construction materials management, low-carbon management, green rating system, sustainable design, lean construction, knowledge management, capability building, value management, and implementation of new technology. Finally, future research directions are proposed, such as the social sustainability of different phases, the improvement of green rating systems, the development of green technologies, the collaboration of normative guidelines from different countries, and so on. This scientometric review explains the state-of-the-art research of SCPs management and encourages more interdisciplinary research involving relevant sustainability areas.
DOI: 10.5281/zenodo.10055844
title: Products and Models for "Sulphur Dioxide in the Mid-Infrared Transmission Spectrum of WASP-39b"

description: The recent inference of sulphur dioxide (SO2) in the atmosphere of the hot (∼1100 K), Saturn-mass exoplanet WASP- 39b from near-infrared JWST observations suggests that photochemistry is a key process in high temperature exoplanet atmospheres. This is due to the low (<1 ppb) abundance of SO2 under thermochemical equilibrium, compared to that produced from the photochemistry of H2O and H2S (1-10ppm). However, the SO2 inference was made from a single, small molecular feature in the transmission spectrum of WASP- 39b at 4.05 μm, and therefore the detection of other SO2 absorption bands at different wavelengths is needed to better constrain the SO2 abundance. Here we report the detection of SO2 spectral features at 7.7 and 8.5 μm in the 5–12μm transmission spectrum of WASP-39b measured by the JWST Mid-Infrared Instrument (MIRI) Low Resolution Spectrometer (LRS). Our observations suggest an abundance of SO2 of 0.5–25ppm (1σ range), consistent with previous findings. In addition to SO2, we find broad water vapour absorption features, as well as an unexplained decrease in the transit depth at wavelengths longer than 10 μm. Fitting the spectrum with a grid of atmospheric forward models, we derive an atmo- spheric heavy element content (metallicity) for WASP-39b of ∼7.1–8.0 × solar and demonstrate that photochemistry shapes the spectra of WASP-39b across a broad wavelength range.
DOI: 10.5281/zenodo.10055845
title: Products and Models for "Sulphur Dioxide in the Mid-Infrared Transmission Spectrum of WASP-39b"

description: The recent inference of sulphur dioxide (SO2) in the atmosphere of the hot (∼1100 K), Saturn-mass exoplanet WASP- 39b from near-infrared JWST observations suggests that photochemistry is a key process in high temperature exoplanet atmospheres. This is due to the low (<1 ppb) abundance of SO2 under thermochemical equilibrium, compared to that produced from the photochemistry of H2O and H2S (1-10ppm). However, the SO2 inference was made from a single, small molecular feature in the transmission spectrum of WASP- 39b at 4.05 μm, and therefore the detection of other SO2 absorption bands at different wavelengths is needed to better constrain the SO2 abundance. Here we report the detection of SO2 spectral features at 7.7 and 8.5 μm in the 5–12μm transmission spectrum of WASP-39b measured by the JWST Mid-Infrared Instrument (MIRI) Low Resolution Spectrometer (LRS). Our observations suggest an abundance of SO2 of 0.5–25ppm (1σ range), consistent with previous findings. In addition to SO2, we find broad water vapour absorption features, as well as an unexplained decrease in the transit depth at wavelengths longer than 10 μm. Fitting the spectrum with a grid of atmospheric forward models, we derive an atmo- spheric heavy element content (metallicity) for WASP-39b of ∼7.1–8.0 × solar and demonstrate that photochemistry shapes the spectra of WASP-39b across a broad wavelength range.
DOI: 10.6084/m9.figshare.25041581
title: Appendix 1. MCQsAppendix 2. ScenariosAppendix 3. Feedback forms

description: Appendix 1. MCQsAppendix 2. ScenariosAppendix 3. Feedback forms
DOI: 10.6084/m9.figshare.25041581.v2
title: Appendix 1. MCQsAppendix 2. ScenariosAppendix 3. Feedback forms

description: Appendix 1. MCQsAppendix 2. ScenariosAppendix 3. Feedback forms
DOI: 10.6084/m9.figshare.25041581.v1
title: Appendix 1. MCQsAppendix 2. ScenariosAppendix 3. Feedback forms

description: Appendix 1. MCQsAppendix 2. ScenariosAppendix 3. Feedback forms
DOI: 10.5883/ds-cambrins
title: Increasing variability in resource supply over time disrupts plant-pollinator interactions

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5281/zenodo.10547056
title: Removal of sequencing adapter contamination improves microbial genome databases
DOI: 10.5281/zenodo.10547057
title: Removal of sequencing adapter contamination improves microbial genome databases
DOI: 10.5066/p13c4fse
title: Mont Carlo Simulation Program from the World Petroleum Assessment 2000, DDS-60 (emcee.xls).xml

description: Monte Carlo programs described in chapter MC, Monte Carlo Simulation Method.  Emc2.xls was the program used to calculate the estimates of undiscovered resources for the World Petroleum Assessment 2000.  The emcee.xls program is a more generalized version of the program, with options for different distribution types.  Directions for the use of both programs are fully documented in chapter MC.
DOI: 10.5281/zenodo.10478611
title: How Fair Is Bioarchaeological Data

description: Data collected for conference proceeding accessible here :https://zenodo.org/record/8139911
DOI: 10.5281/zenodo.8140067
title: How Fair Is Bioarchaeological Data

description: Data collected for conference proceeding accessible here :https://zenodo.org/record/8139911
DOI: 10.25418/crick.23295188
title: Dataset and code for "Functional specificity of recurrent inhibition in visual cortex"

description: This repository contains preprocessed data and analysis code for "Functional specificity of recurrent inhibition in visual cortex" by P. Znamenskiy, M. Kim, D.R. Muir, M.F. Iacaruso, S. B. Hofer, and T.D. Mrsic-Flogel.
<strong>Data</strong>

 <strong>connections.mat</strong>: in vitro connectivity data from multiple patch clamp recordings<br>

 <strong>pv_dobs.csv</strong>: dates of birth and in vitro recording for each mouse<br>

 <strong>pv_rois.mat</strong>: in vivo calcium imaging data used in Figures 2-3. Directories <strong>PV** </strong>contain data from individual sessions.<br>

 <strong>pv_rois_vivo_vitro.mat</strong>: in vivo data for cells recorded in vitro (Figure 4)

For access to raw image data, please contact Petr Znamenskiy (petr.znamenskiy@crick.ac.uk).
<strong>Analysis code</strong>
Required dependencies for generating figures:

 <strong>shadedErrorBar</strong> for plotting nice error bars [https://github.com/raacampbell/shadedErrorBar]

Additional dependencies for preprocessing raw imaging data (not required to generate figures):

 <strong>twophotonanalysisv2</strong>: Mrsic-Flogel lab pipeline for preprocessing of 2p imaging data. Please contact Thomas Mrsic-Flogel (t.mrsic-flogel@ucl.ac.uk) or Petr Znamenskiy (petr.znamenskiy@crick.ac.uk).<br>

 <strong>ast_model</strong>: Asymmetric Student-t model for neuropil decontamination [https://github.com/BaselLaserMouse/ast_model]

Code organization:

 <strong>connectivity</strong>: functions for analysing in vitro connectivity
 <strong>selectivity</strong>: functions for analysing in vivo responses<br>

 <strong>preprocess:</strong> functions used to preprocess calcium imaging data and estimate stimulus tuning<br>

 <strong>NetworkSimulations</strong>: network simulation code

To generate figures, run the scripts listed in <strong>all_figures.m</strong>.
<strong>Simulation code</strong>

 Required dependencies:<br>
The `NEST` spiking neuron simulator, v2.12 [https://nest-simulator.org]<br>

 Matlab python connector<br>

 Python 2.7

<strong>SimulateAnalyzeTorusNetworks</strong> performs simulation and analysis of the torus model networks discussed in the paper, and generates the paper figures.
DOI: 10.25418/crick.23295188.v1
title: Dataset and code for "Functional specificity of recurrent inhibition in visual cortex"

description: This repository contains preprocessed data and analysis code for "Functional specificity of recurrent inhibition in visual cortex" by P. Znamenskiy, M. Kim, D.R. Muir, M.F. Iacaruso, S. B. Hofer, and T.D. Mrsic-Flogel.
<strong>Data</strong>

 <strong>connections.mat</strong>: in vitro connectivity data from multiple patch clamp recordings<br>

 <strong>pv_dobs.csv</strong>: dates of birth and in vitro recording for each mouse<br>

 <strong>pv_rois.mat</strong>: in vivo calcium imaging data used in Figures 2-3. Directories <strong>PV** </strong>contain data from individual sessions.<br>

 <strong>pv_rois_vivo_vitro.mat</strong>: in vivo data for cells recorded in vitro (Figure 4)

For access to raw image data, please contact Petr Znamenskiy (petr.znamenskiy@crick.ac.uk).
<strong>Analysis code</strong>
Required dependencies for generating figures:

 <strong>shadedErrorBar</strong> for plotting nice error bars [https://github.com/raacampbell/shadedErrorBar]

Additional dependencies for preprocessing raw imaging data (not required to generate figures):

 <strong>twophotonanalysisv2</strong>: Mrsic-Flogel lab pipeline for preprocessing of 2p imaging data. Please contact Thomas Mrsic-Flogel (t.mrsic-flogel@ucl.ac.uk) or Petr Znamenskiy (petr.znamenskiy@crick.ac.uk).<br>

 <strong>ast_model</strong>: Asymmetric Student-t model for neuropil decontamination [https://github.com/BaselLaserMouse/ast_model]

Code organization:

 <strong>connectivity</strong>: functions for analysing in vitro connectivity
 <strong>selectivity</strong>: functions for analysing in vivo responses<br>

 <strong>preprocess:</strong> functions used to preprocess calcium imaging data and estimate stimulus tuning<br>

 <strong>NetworkSimulations</strong>: network simulation code

To generate figures, run the scripts listed in <strong>all_figures.m</strong>.
<strong>Simulation code</strong>

 Required dependencies:<br>
The `NEST` spiking neuron simulator, v2.12 [https://nest-simulator.org]<br>

 Matlab python connector<br>

 Python 2.7

<strong>SimulateAnalyzeTorusNetworks</strong> performs simulation and analysis of the torus model networks discussed in the paper, and generates the paper figures.
DOI: 10.21227/6hsn-jh71
title: IEEEXtreme 11: RecXor

description: This dataset contains a total of 3704 submissions, with 9% correct solutions and 45% partial solutions. Link to the original challenge: https://csacademy.com/ieeextreme-practice/task/f8d68dbb0c844910797ce64354c66143/ See the included PDF document for details about the original challenge.