cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14200172
title: Auxillary Table S7

description: A table containing statistics, accession numbers and other contextual data about the Single cell Assembled Genomes submitted to ENA. A table with the whole ~500.000 bins generated in this study can be found at the scilifelab-figshare doi:10.17044/scilifelab.13005311. Contains the fields: • bin_id: the unique identifier of a MAG • GC: GC-content of MAG • coding_density: coding-density estimate, e.g. sum of the length of all predicted amino-acid sequences times 3 divided by the length of the genome (in bases) • completeness: estimated completeness computed by CheckM • contamination: estimated redundancy computed by CheckM • strain_heterogeneity: computed by CheckM • length: length in bases of the MAG • nb_contigs: number of contigs in the MAG • nb_proteins: number of predicted proteins encoded in the bin (for the predicted amino-acid sequences in the easy-access repository) • gtdbtk_classification: classification by GTDBtk r89 • sourmash_classification: classification by sourmash using 2 databases, the GTDB (r89), and a database based on our GTDBtk classification • taxonomy: conclusion of the two previous • mOTU: membership to a metagenomic Operational Taxonomic Unit (mOTU), e.g. species level clustering of bins • path: relative path a tar-ball containing nucleotide, CDS- and amino-acid sequences, GFF, eggNOGmapper, and sourmash-signature files. Relative to https://export.uppmax.uu.se/uppstore2018116/stratfreshdb/ • accession: SRA/ENA sample ID of the assembly • genbank_accession: genbank accession number
DOI: 10.6084/m9.figshare.14200175
title: Auxillary Table S6

description: A table containing statistics, accession numbers and other contextual data about the 12682 Metagenome Assembled Genomes of moderate and high-quality submitted to ENA (e.g. completeness estimated higher then 40% and redundancy lower then 5%). A table with the whole ~500.000 bins generated in this study can be found at the scilifelab-figshare doi:10.17044/scilifelab.13005311. Contains the fields: • bin_id: the unique identifier of a MAG • GC: GC-content of MAG • coding_density: coding-density estimate, e.g. sum of the length of all predicted amino-acid sequences times 3 divided by the length of the genome (in bases) • completeness: estimated completeness computed by CheckM • contamination: estimated redundancy computed by CheckM • strain_heterogeneity: computed by CheckM • length: length in bases of the MAG • nb_contigs: number of contigs in the MAG • nb_proteins: number of predicted proteins encoded in the bin (for the predicted amino-acid sequences in the easy-access repository) • gtdbtk_classification: classification by GTDBtk r89 • sourmash_classification: classification by sourmash using 2 databases, the GTDB (r89), and a database based on our GTDBtk classification • taxonomy: conclusion of the two previous • mOTU: membership to a metagenomic Operational Taxonomic Unit (mOTU), e.g. species level clustering of bins • path: relative path a tar-ball containing nucleotide, CDS- and amino-acid sequences, GFF, eggNOGmapper, and sourmash-signature files. Relative to https://export.uppmax.uu.se/uppstore2018116/stratfreshdb/ • accession: SRA/ENA sample ID of the assembly • genbank_accession: genbank accession number
DOI: 10.6084/m9.figshare.14200232.v1
title: Auxillary Data S9

description: An archive containing QC-data for metagenomic libraries. As generated by fastQC, parsed and reported by multiQC, as well as with in-house script available in our github-repository. Contains the main-files: • multiqc_report.html: full report on all libraries, needs the ‘multiqc_data’-folder to be openable with any browser, these are reported split by lane, submitted data has been summed to libraries. • Q_scores_histograms_by_sample.csv: summary of the fastQC data used in Figure 5
DOI: 10.6084/m9.figshare.14200232
title: Auxillary Data S9

description: An archive containing QC-data for metagenomic libraries. As generated by fastQC, parsed and reported by multiQC, as well as with in-house script available in our github-repository. Contains the main-files: • multiqc_report.html: full report on all libraries, needs the ‘multiqc_data’-folder to be openable with any browser, these are reported split by lane, submitted data has been summed to libraries. • Q_scores_histograms_by_sample.csv: summary of the fastQC data used in Figure 5
DOI: 10.15468/6qwqkt
title: Two new species of the genus Psyllaphorura (Collembola: Onychiuridae) from the east of European Russia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shveenkova, Yulia B., Babenko, Anatoly B. (2021): Two new species of the genus Psyllaphorura (Collembola: Onychiuridae) from the east of European Russia. Zootaxa 4965 (1): 114-128, DOI: https://doi.org/10.11646/zootaxa.4965.1.5
DOI: 10.6084/m9.figshare.14546736
title: Metatranscriptomic analysis identifies different viral-like sequences in two neotropical Mansoniini mosquito species

description: Datasets generated from the manuscript "Metatranscriptomic analysis identifies different viral-like sequences in two neotropical Mansoniini mosquito species"
DOI: 10.6084/m9.figshare.14546736.v1
title: Metatranscriptomic analysis identifies different viral-like sequences in two neotropical Mansoniini mosquito species

description: Datasets generated from the manuscript "Metatranscriptomic analysis identifies different viral-like sequences in two neotropical Mansoniini mosquito species"
DOI: 10.17909/t9-6s10-5z38
title: FUV Observations of the Bright Star in the Globular Cluster 47 Tucanae

description: The ultraviolet spectra of late-B stars exhibit a myriad of absorption features, many due to species that are unobservable from the ground. The Bright Star thus provides a unique window into the chemistry of 47~Tuc. Using these data, we determine photospheric abundances of 26 elements, including Ne, P, Cl, Ga, Pd, In, Sn, Hg, and Pb, which have not previously been published for this cluster.
DOI: 10.7284/136180
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AR40 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136426
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HLY1902 using a Sea-Bird SBE-911+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136617
title: Anemometer data collected during research cruise SKQ201916S using a Gill WindObserver 75 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136618
title: Anemometer data collected during research cruise SKQ201916S using a Gill WindObserver 75 instrument system onboard the platform RV Sikuliaq

description: Processed data created by vessel technician during a Field_expedition
DOI: 10.7284/137682
title: Anemometer data collected during research cruise SKQ201916S using a RM Young 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137683
title: Anemometer data collected during research cruise SKQ201916S using a RM Young 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136603
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SKQ201916S using a Sea-Bird SBE-911+ instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136607
title: Flowmeter data collected during research cruise SKQ201916S using a Krohne Optiflux 5000 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136608
title: Fluorometer data collected during research cruise SKQ201916S using a Turner Cyclops-7 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136609
title: GNSS (Global Navigation Satellite System) data collected during research cruise SKQ201916S using a C&C C-Nav 3050 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136606
title: Gravimeter data collected during research cruise SKQ201916S using a Bell BGM-3 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136610
title: Gyrocompass data collected during research cruise SKQ201916S using a Sperry NAVIGAT 2100 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136611
title: Gyrocompass data collected during research cruise SKQ201916S using a Sperry NAVIGAT 2100 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136621
title: INS (Inertial Navigation System) data collected during research cruise SKQ201916S using a Kongsberg Seapath 320+ instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136612
title: Meteorological Station data collected during research cruise SKQ201916S using a Vaisala PTU307 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136622
title: Multibeam Echosounder data collected during research cruise SKQ201916S using a Kongsberg EM302 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136613
title: Radiometer data collected during research cruise SKQ201916S using a RMR Co. PRP instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136614
title: Radiometer data collected during research cruise SKQ201916S using a Biospherical QSR-2150 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136616
title: TSG (Thermosalinograph) data collected during research cruise SKQ201916S using a Sea-Bird SBE-45 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136836
title: Anemometer data collected during research cruise SKQ201924S using a Gill WindObserver 75 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136837
title: Anemometer data collected during research cruise SKQ201924S using a Gill WindObserver 75 instrument system onboard the platform RV Sikuliaq

description: Processed data created by vessel technician during a Field_expedition
DOI: 10.7284/137514
title: Anemometer data collected during research cruise SKQ201924S using a RM Young 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137668
title: Anemometer data collected during research cruise SKQ201924S using a RM Young 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137669
title: Anemometer data collected during research cruise SKQ201924S using a RM Young 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136825
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SKQ201924S using a Sea-Bird SBE-911+ instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136827
title: Flowmeter data collected during research cruise SKQ201924S using a Krohne Optiflux 5000 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136828
title: GNSS (Global Navigation Satellite System) data collected during research cruise SKQ201924S using a C&C C-Nav 3050 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136826
title: Gravimeter data collected during research cruise SKQ201924S using a Bell BGM-3 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136829
title: Gyrocompass data collected during research cruise SKQ201924S using a Sperry NAVIGAT 2100 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136830
title: Gyrocompass data collected during research cruise SKQ201924S using a Sperry NAVIGAT 2100 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136840
title: INS (Inertial Navigation System) data collected during research cruise SKQ201924S using a Kongsberg Seapath 320+ instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.14544567
title: datasets_for_figure_replication

description: This file has all the datasets necessary to generate figures in our manuscript. Code using these figures can be found in the complementary GitHub repository (https://github.com/b-tierney/orfleton-v2/tree/prep_for_submission).
DOI: 10.5517/ccdc.csd.cc24x4z6
title: CCDC 1993268: Experimental Crystal Structure Determination

description: Related Article: Edward Ocansey, James Darkwa, Banothile C.E. Makhubela|2021|Inorg.Chim.Acta|523|120389|doi:10.1016/j.ica.2021.120389
DOI: 10.7284/136831
title: Meteorological Station data collected during research cruise SKQ201924S using a Vaisala PTU307 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc25mzyr
title: CCDC 2015215: Experimental Crystal Structure Determination

description: Related Article: Eleftherios Halevas, Barbara Mavroidi, Maria Pelecanou, Antonios G. Hatzidimitriou|2021|Inorg.Chim.Acta|523|120407|doi:10.1016/j.ica.2021.120407
DOI: 10.5517/ccdc.csd.cc25mzzs
title: CCDC 2015216: Experimental Crystal Structure Determination

description: Related Article: Eleftherios Halevas, Barbara Mavroidi, Maria Pelecanou, Antonios G. Hatzidimitriou|2021|Inorg.Chim.Acta|523|120407|doi:10.1016/j.ica.2021.120407
DOI: 10.6084/m9.figshare.14544567.v1
title: datasets_for_figure_replication

description: This file has all the datasets necessary to generate figures in our manuscript. Code using these figures can be found in the complementary GitHub repository (https://github.com/b-tierney/orfleton-v2/tree/prep_for_submission).
DOI: 10.7284/136841
title: Multibeam Echosounder data collected during research cruise SKQ201924S using a Kongsberg EM302 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136842
title: Multibeam Echosounder data collected during research cruise SKQ201924S using a Kongsberg EM302 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136832
title: Radiometer data collected during research cruise SKQ201924S using a RMR Co. PRP instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136833
title: Radiometer data collected during research cruise SKQ201924S using a Biospherical QSR-2150 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc26qf3h
title: CCDC 2047336: Experimental Crystal Structure Determination

description: Related Article: B. Zarychta, Z. Czapla, J. Przesławski, P. Szklarz|2021|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|77|225|doi:10.1107/S2052520621001256
DOI: 10.7284/136835
title: TSG (Thermosalinograph) data collected during research cruise SKQ201924S using a Sea-Bird SBE-45 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc276bzs
title: CCDC 2061685: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.5517/ccdc.csd.cc276c1w
title: CCDC 2061687: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.7284/140839
title: GNSS (Global Navigation Satellite System) data collected during research cruise SKQ202012S using a C&C C-Nav 3050 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc276c2x
title: CCDC 2061688: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.5517/ccdc.csd.cc276c3y
title: CCDC 2061689: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.5517/ccdc.csd.cc276c4z
title: CCDC 2061690: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.7284/140975
title: Gravimeter data collected during research cruise SKQ202012S using a Bell BGM-3 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc276c50
title: CCDC 2061691: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.5517/ccdc.csd.cc276c61
title: CCDC 2061692: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.5517/ccdc.csd.cc276c72
title: CCDC 2061693: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.7284/140841
title: Water Temperature data collected during research cruise SKQ202012S using a Sea-Bird SBE-38 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc276c83
title: CCDC 2061694: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.6084/m9.figshare.14551107
title: genes_abundant_in_specific_ecological_groups

description: There are 4 files here. Each is a binary matrix.<br>sig_genes_binary_mat_human_vs_non_gut.txt shows the specific ecologies that genes abundant in at least one human ecologies are in<br><br>AQUATIC_TERRESTRIAL_CONGENES_V2_SEQS_sigGenes_intersections_binary_mat.txt shows the specific ecologies that genes abundant in aquatic and terrestrial ecologies are in.<br><br>GUT_ENV_CONGENES_SEQS_sigGenes_intersections_binary_mat.txt shows the specific ecologies that genes abundant in gut and environmental ecologies are in.<br><br>HUMAN-GUT_NON-HUMAN-GUT_CONGENES_SEQS_V2_sigGenes_intersections_binary_mat.txt shows the specific ecologies that genes abundant in human gut and non human gut ecologies are in.<br><br><br>
DOI: 10.26208/51cv-tr24
title: Supplementary data, code, and information for ‘Global-Scale Temperature Patterns and Climate Forcing Over the Past Six Centuries’ (Mann et al. 1998 – the first ‘Hockey Stick’ paper [MBH98])

description: Spatially resolved global reconstructions of annual surface temperature patterns over the past six centuries are based on the multivariate calibration of widely distributed high-resolution proxy climate indicators. Time-dependent correlations of the reconstructions with time-series records representing changes in greenhouse-gas concentrations, solar irradiance, and volcanic aerosols suggest that each of these factors has contributed to the climate variability of the past 400 years, with greenhouse gases emerging as the dominant forcing during the twentieth century. Northern Hemisphere mean annual temperatures for three of the past eight years are warmer than any other year since (at least) AD 1400.
DOI: 10.5517/ccdc.csd.cc276c94
title: CCDC 2061695: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.7284/140918
title: TSG (Thermosalinograph) data collected during research cruise SKQ202012S using a Sea-Bird SBE-45 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc276cb5
title: CCDC 2061696: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.5517/ccdc.csd.cc276cc6
title: CCDC 2061697: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630
DOI: 10.5517/ccdc.csd.cc276hb9
title: CCDC 2061820: Experimental Crystal Structure Determination

description: Related Article: David Gygi, Miguel I. Gonzalez, Seung Jun Hwang, Kay T. Xia, Yangzhong Qin, Elizabeth J. Johnson, François Gygi, Yu-Sheng Chen, Daniel G. Nocera|2021|J.Am.Chem.Soc.|143|6060|doi:10.1021/jacs.1c02630