cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mtaqsk
title: Occurrence Download

description: A dataset containing 399 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-73.9981398000000041 40.8357351000000008, -73.9981398000000041 40.8377292500000024, -73.9981398000000041 40.8403531200000032, -73.9981398000000041 40.8421373600000024, -73.9981398000000041 40.8436067299999976, -73.9981398000000041 40.8462305999999984, -73.9963604800000070 40.8462305999999984, -73.9943721700000054 40.8462305999999984, -73.9920699099999979 40.8462305999999984, -73.9892444200000057 40.8462305999999984, -73.9863142699999941 40.8462305999999984, -73.9846395999999942 40.8462305999999984, -73.9846395999999942 40.8449711399999984, -73.9846395999999942 40.8433968200000024, -73.9846395999999942 40.8407729400000008, -73.9846395999999942 40.8390936600000032, -73.9846395999999942 40.8377292500000024, -73.9846395999999942 40.8357351000000008, -73.9870468099999954 40.8357351000000008, -73.9891397699999942 40.8357351000000008, -73.9907094900000004 40.8357351000000008, -73.9938489299999986 40.8357351000000008, -73.9963604800000070 40.8357351000000008, -73.9981398000000041 40.8357351000000008))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 399 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093763-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hamdck
title: Occurrence Download

description: A dataset containing 3866 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Micarea cinerea, Micarea denigrata (Fr.) Hedl.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 3866 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245633-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7357s
title: Occurrence Download

description: A dataset containing 5488 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pongo pygmaeus (Linnaeus, 1760)"
 ]
}

 The dataset includes 5488 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086055-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qhvuf
title: Occurrence Download

description: A dataset containing 131887 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus palustris Münchh.",
 "Year 1992-2022"
 ]
}

 The dataset includes 131887 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093755-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-27703
title: Correspondence book No. 1 of Pentecostal Missionary Union [PMU], 1914-1920

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 2 including 61 pages of subject index; 2011 pages of PMU outgoing correspondence;
DOI: 10.15468/dl.yqrv46
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyclopsitta coxeni Gould, 1867"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0374100-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qg466
title: Occurrence Download

description: A dataset listing the 514 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is France"
 ]
}

 The dataset's 514 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086034-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbdsrn
title: Occurrence Download

description: A dataset containing 6149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphipyra pyramidoides Guenée, 1852",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 6149 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128724-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-27715
title: Correspondence book No. 1 of Pentecostal Missionary Union [PMU], 1914-1920

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 2 including 61 pages of subject index; 2011 pages of PMU outgoing correspondence;
DOI: 10.15468/dl.zcr7x7
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Munida llenasi Macpherson, 2006"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0124944-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8k8c38
title: Occurrence Download

description: A dataset containing 1745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Themeda triandra Forssk.)",
 "HasCoordinate is true",
 "Country is South Africa"
 ]
}

 The dataset includes 1745 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086062-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-27773
title: Correspondence book No. 1 of Pentecostal Missionary Union [PMU], 1914-1920

description: [description english/roman)] Pentecostal Missionary Union [PMU] Correspondence book No. 2 including 61 pages of subject index; 2011 pages of PMU outgoing correspondence;
DOI: 10.6084/m9.figshare.21436507
title: Polymorphisms in glucose homeostasis genes are associated with cardiovascular and renal parameters in patients with diabetic nephropathy

description: Diabetic nephropathy (DN) has become the major cause of end-stage kidney disease and is associated to an extremely high cardiovascular (CV) risk. We screened 318 DN patients for 23 SNPs in four glucose transporters (<i>SLC2A1</i>, <i>SLC2A2</i>, <i>SLC5A1</i> and <i>SLC5A2</i>) and in <i>KCNJ11</i> and <i>ABCC8</i>, which participate in insulin secretion. Regression models were utilised to identify associations with renal parameters, atherosclerosis measurements and CV events. In addition, 506 individuals with normal renal function were also genotyped as a control group. In the patient’s cohort, common carotid intima media thickness values were higher in carriers of <i>ABCC8</i> rs3758953 and rs2188966 vs. non-carriers [0.78(0.25) vs. 0.72(0.22) mm, <i>p</i> &lt; 0.05 and 0.79(0.26) vs. 0.72(0.22) mm, <i>p</i> &lt; 0.05], respectively. Furthermore, <i>ABCC8</i> rs1799859 was linked to presence of plaque in these patients [1.89(1.03-3.46), <i>p</i> &lt; 0.05]. Two variants, <i>SLC2A2</i> rs8192675 and <i>SLC5A2</i> rs9924771, were associated with better [OR = 0.49 (0.30-0.81), <i>p</i> &lt; 0.01] and worse [OR = 1.92 (1.15-3.21), <i>p</i> &lt; 0.05] CV event-free survival, respectively. With regard to renal variables, rs841848 and rs710218 in <i>SLC2A1</i>, as well as rs3813008 in <i>SLC5A2</i>, significantly altered estimated glomerular filtration rate values [carriers vs. non-carriers: 30.41(22.57) vs. 28.25(20.10), <i>p</i> &lt; 0.05; 28.95(21.11) vs. 29.52(21.66), <i>p</i> &lt; 0.05 and 32.03(18.06) vs. 28.14(23.06) ml/min/1.73 m<sup>2</sup>, <i>p</i> &lt; 0.05]. In addition, <i>ABCC8</i> rs3758947 was associated with higher albumin-to-creatinine ratios [193.5(1139.91) vs. 160(652.90) mg/g, <i>p</i> &lt; 0.05]. The epistasis analysis of SNP-pairs interactions showed that <i>ABCC8</i> rs3758947 interacted with several SNPs in <i>SLC2A2</i> to significantly affect CV events (<i>p</i> &lt; 0.01). No SNPs were associated with DN risk. Polymorphisms in genes determining glucose homeostasis may play a relevant role in renal parameters and CV-related outcomes of DN patients.
DOI: 10.6084/m9.figshare.21436507.v1
title: Polymorphisms in glucose homeostasis genes are associated with cardiovascular and renal parameters in patients with diabetic nephropathy

description: Diabetic nephropathy (DN) has become the major cause of end-stage kidney disease and is associated to an extremely high cardiovascular (CV) risk. We screened 318 DN patients for 23 SNPs in four glucose transporters (<i>SLC2A1</i>, <i>SLC2A2</i>, <i>SLC5A1</i> and <i>SLC5A2</i>) and in <i>KCNJ11</i> and <i>ABCC8</i>, which participate in insulin secretion. Regression models were utilised to identify associations with renal parameters, atherosclerosis measurements and CV events. In addition, 506 individuals with normal renal function were also genotyped as a control group. In the patient’s cohort, common carotid intima media thickness values were higher in carriers of <i>ABCC8</i> rs3758953 and rs2188966 vs. non-carriers [0.78(0.25) vs. 0.72(0.22) mm, <i>p</i> &lt; 0.05 and 0.79(0.26) vs. 0.72(0.22) mm, <i>p</i> &lt; 0.05], respectively. Furthermore, <i>ABCC8</i> rs1799859 was linked to presence of plaque in these patients [1.89(1.03-3.46), <i>p</i> &lt; 0.05]. Two variants, <i>SLC2A2</i> rs8192675 and <i>SLC5A2</i> rs9924771, were associated with better [OR = 0.49 (0.30-0.81), <i>p</i> &lt; 0.01] and worse [OR = 1.92 (1.15-3.21), <i>p</i> &lt; 0.05] CV event-free survival, respectively. With regard to renal variables, rs841848 and rs710218 in <i>SLC2A1</i>, as well as rs3813008 in <i>SLC5A2</i>, significantly altered estimated glomerular filtration rate values [carriers vs. non-carriers: 30.41(22.57) vs. 28.25(20.10), <i>p</i> &lt; 0.05; 28.95(21.11) vs. 29.52(21.66), <i>p</i> &lt; 0.05 and 32.03(18.06) vs. 28.14(23.06) ml/min/1.73 m<sup>2</sup>, <i>p</i> &lt; 0.05]. In addition, <i>ABCC8</i> rs3758947 was associated with higher albumin-to-creatinine ratios [193.5(1139.91) vs. 160(652.90) mg/g, <i>p</i> &lt; 0.05]. The epistasis analysis of SNP-pairs interactions showed that <i>ABCC8</i> rs3758947 interacted with several SNPs in <i>SLC2A2</i> to significantly affect CV events (<i>p</i> &lt; 0.01). No SNPs were associated with DN risk. Polymorphisms in genes determining glucose homeostasis may play a relevant role in renal parameters and CV-related outcomes of DN patients.
DOI: 10.6084/m9.figshare.18544554
title: Increased incidence of melanoma in children and adolescents in Finland in 1990–2014: nationwide re-evaluation of histopathological characteristics

description: Changes in the incidence of melanoma in children and adolescents have been reported in Europe and in the USA in the recent decades. The aim of this study was to examine the incidence of paediatric and adolescent melanomas in Finland in 1990-2014, and the associated clinical and histopathological characteristics to reveal temporal trends, such as changes in diagnostic sensitivity of Spitzoid melanomas. Information on 122 patients diagnosed with cutaneous melanoma at 0-19 years of age in Finland in 1990-2014 were retrieved from the Finnish Cancer Registry. 73 primary melanoma archival samples were re-evaluated by two dermatopathologists to allow comparability over time. A 5.6% annual increase was observed in the incidence of melanoma among children and adolescents during the study period. Fifty-six tumours were confirmed as malignant melanomas in the re-evaluation. After correction for tumour misclassification in the Cancer Registry, the age-adjusted annual incidence was estimated to have increased from 1.4/1 000 000 in 1990-1994 to 5.8/1 000 000 in 2010-2014. The change in incidence was most prominent among adolescents and in Spitzoid melanoma subtype. Melanomas diagnosed 1990-2002 and 2003-2014 did not differ in terms of their clinicopathological characteristics or prognosis (hazard ratio for melanoma-related death 1.53, 95% CI 0.30 to 7.88). Spitzoid melanomas were diagnosed at a younger age, were of higher stage and had higher Clark level than other melanomas, yet the hazard ratio for death was 0.52 (95% CI 0.10 to 2.58) for Spitzoid versus other melanomas. The incidence of cutaneous melanoma has clearly increased among the young in Finland, especially among adolescents. No evidence for overdiagnosis of Spitzoid melanomas as the underlying cause of the increased incidence was observed.Key messageA nationwide retrospective re-evaluation of the cutaneous melanomas recorded in the Finnish Cancer Registry among patients aged 0–19 years in Finland in 1990–2014 revealed an approximately 4-fold increase in the incidence. The increase in the incidence was most prominent among adolescents and in the Spitzoid melanoma subtype. Our results contrast those reported in other countries, where the incidence of melanoma among adolescents has declined. A nationwide retrospective re-evaluation of the cutaneous melanomas recorded in the Finnish Cancer Registry among patients aged 0–19 years in Finland in 1990–2014 revealed an approximately 4-fold increase in the incidence. The increase in the incidence was most prominent among adolescents and in the Spitzoid melanoma subtype. Our results contrast those reported in other countries, where the incidence of melanoma among adolescents has declined.
DOI: 10.6084/m9.figshare.18544554.v1
title: Increased incidence of melanoma in children and adolescents in Finland in 1990–2014: nationwide re-evaluation of histopathological characteristics

description: Changes in the incidence of melanoma in children and adolescents have been reported in Europe and in the USA in the recent decades. The aim of this study was to examine the incidence of paediatric and adolescent melanomas in Finland in 1990-2014, and the associated clinical and histopathological characteristics to reveal temporal trends, such as changes in diagnostic sensitivity of Spitzoid melanomas. Information on 122 patients diagnosed with cutaneous melanoma at 0-19 years of age in Finland in 1990-2014 were retrieved from the Finnish Cancer Registry. 73 primary melanoma archival samples were re-evaluated by two dermatopathologists to allow comparability over time. A 5.6% annual increase was observed in the incidence of melanoma among children and adolescents during the study period. Fifty-six tumours were confirmed as malignant melanomas in the re-evaluation. After correction for tumour misclassification in the Cancer Registry, the age-adjusted annual incidence was estimated to have increased from 1.4/1 000 000 in 1990-1994 to 5.8/1 000 000 in 2010-2014. The change in incidence was most prominent among adolescents and in Spitzoid melanoma subtype. Melanomas diagnosed 1990-2002 and 2003-2014 did not differ in terms of their clinicopathological characteristics or prognosis (hazard ratio for melanoma-related death 1.53, 95% CI 0.30 to 7.88). Spitzoid melanomas were diagnosed at a younger age, were of higher stage and had higher Clark level than other melanomas, yet the hazard ratio for death was 0.52 (95% CI 0.10 to 2.58) for Spitzoid versus other melanomas. The incidence of cutaneous melanoma has clearly increased among the young in Finland, especially among adolescents. No evidence for overdiagnosis of Spitzoid melanomas as the underlying cause of the increased incidence was observed.Key messageA nationwide retrospective re-evaluation of the cutaneous melanomas recorded in the Finnish Cancer Registry among patients aged 0–19 years in Finland in 1990–2014 revealed an approximately 4-fold increase in the incidence. The increase in the incidence was most prominent among adolescents and in the Spitzoid melanoma subtype. Our results contrast those reported in other countries, where the incidence of melanoma among adolescents has declined. A nationwide retrospective re-evaluation of the cutaneous melanomas recorded in the Finnish Cancer Registry among patients aged 0–19 years in Finland in 1990–2014 revealed an approximately 4-fold increase in the incidence. The increase in the incidence was most prominent among adolescents and in the Spitzoid melanoma subtype. Our results contrast those reported in other countries, where the incidence of melanoma among adolescents has declined.
DOI: 10.6084/m9.figshare.20222930
title: Trends in <i>Clostridioides difficile</i> prevalence, mortality, severity, and age composition during 2003–2014, the national inpatient sample database in the US

description: <i>Clostridioides difficile</i> (formerly known as <i>Clostridium difficile</i>) infection (CDI) is one of the most prevalent healthcare-associated infections in the United States (US). In the early 2000s, CDI emerged as a great threat with increasing prevalence, mortality, and severity, especially in advanced age. We investigated the US national trends in in-hospital CDI prevalence, mortality, severity, and age composition from 2003 to 2014. We identified the patients with CDI using the national inpatient sample data from 2003 to 2014. We performed Poisson regression model and Kendall’s tau-b correlation test for our analyses. Adjusted overall CDI prevalence did not significantly change during 2003–2014. In-hospital mortality of overall CDI did not significantly change during 2003–2008, then significantly decreased during 2008–2014. Severity of overall CDI significantly increased during 2003–2008, then decreased during 2008–2014. The proportions of patients with age ≥ 65 years decreased in CDI prevalence, mortality, and severity during 2003–2014. Compared to the earlier years 2003–2008, overall CDI outcome improved in the later years 2008–2014. Younger patients increasingly contributed to CDI prevalence, mortality, and severity during 2003–2014. More studies to understand underlying driving forces of changes in CDI trends are warranted to mitigate CDI.
DOI: 10.6084/m9.figshare.20222930.v1
title: Trends in <i>Clostridioides difficile</i> prevalence, mortality, severity, and age composition during 2003–2014, the national inpatient sample database in the US

description: <i>Clostridioides difficile</i> (formerly known as <i>Clostridium difficile</i>) infection (CDI) is one of the most prevalent healthcare-associated infections in the United States (US). In the early 2000s, CDI emerged as a great threat with increasing prevalence, mortality, and severity, especially in advanced age. We investigated the US national trends in in-hospital CDI prevalence, mortality, severity, and age composition from 2003 to 2014. We identified the patients with CDI using the national inpatient sample data from 2003 to 2014. We performed Poisson regression model and Kendall’s tau-b correlation test for our analyses. Adjusted overall CDI prevalence did not significantly change during 2003–2014. In-hospital mortality of overall CDI did not significantly change during 2003–2008, then significantly decreased during 2008–2014. Severity of overall CDI significantly increased during 2003–2008, then decreased during 2008–2014. The proportions of patients with age ≥ 65 years decreased in CDI prevalence, mortality, and severity during 2003–2014. Compared to the earlier years 2003–2008, overall CDI outcome improved in the later years 2008–2014. Younger patients increasingly contributed to CDI prevalence, mortality, and severity during 2003–2014. More studies to understand underlying driving forces of changes in CDI trends are warranted to mitigate CDI.
DOI: 10.6084/m9.figshare.20291941
title: Urinary exosomes derived circRNAs as biomarkers for chronic renal fibrosis

description: Chronic renal disease (CKD) is a common and irreversible loss of renal function. Renal fibrosis reflected the degree of renal dysfunction. However, the current biomarkers only characterize the renal function instead of indicating the fibrosis degree. The potential diagnostic value of urinary exosomes derived circRNAs for renal fibrosis needs to be further studied. Urine exosomes from 3 chronic kidney disease (CKD) patients without renal fibrosis and 3 renal fibrotic patients were collected and human circRNAs microarray analysis were performed to detect the circRNAs expression profile. 110 biopsy-proven CKD patients and 54 healthy controls were enrolled and urine exosomes derived RNA was isolated. The expression of hsa_circ_0036649 was measured and the correlation with renal function parameter and pathological indicators was performed. The receiver operating characteristic (ROC) curve for the diagnosis of renal fibrosis was calculated. Human circRNAs microarray showed 365 circRNAs up expressed and 195 circRNAs down expressed in renal fibrotic patients compared to none fibrosis CKD patients. The expression of hsa_circ_0036649 was decreased in renal fibrotic patients according to RT-PCR and correlated with serum creatinine, blood urea nitrogen (BUN), estimated glomerular filtration rate and cystatin c. Further, the expression of hsa_circ_0036649 was correlated with the score of tubulointerstitial fibrosis (TIF) and the score of glomerular sclerosis. The ROC curve showed that hsa_circ_0036649 may predict renal fibrosis at a cut-off value of 0.597 with a sensitivity of 45.5% and specificity of 87.9%. Expression of urinary exosomes derived hsa_circ_0036649 associated with the degree of renal fibrosis. Its potential role as a biomarker in CKD remained to be supported by further follow-up studies.
Key MessagescircRNAs profile in urine exosomes in renal fibrosis patients was revealed.The expression of urine exosomes derived hsa_circ_0036649 was correlated to renal function and fibrosis degree.circRNAs derived from urinary exosomes may become a new research direction for biomarkers of renal fibrosis. circRNAs profile in urine exosomes in renal fibrosis patients was revealed. The expression of urine exosomes derived hsa_circ_0036649 was correlated to renal function and fibrosis degree. circRNAs derived from urinary exosomes may become a new research direction for biomarkers of renal fibrosis.