cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13977707.v1
title: Environmental Awareness Questionnaire Score through SEA Assessment

description: The Environmental awareness questionnaire uses a Strategic Environmental Assessment (SEA) measurement tool with 6 indicators and 18 sub-indicators distributed to high school students to find out the EA profile
DOI: 10.6084/m9.figshare.16570653.v1
title: dataset.xlsx

description: Dataset containing daily variables used in this study.
DOI: 10.6084/m9.figshare.21136702.v1
title: ALS NovaSeq Classification Dataset

description: NovaSeq ALS feature set used for supervised classification
DOI: 10.6084/m9.figshare.7963757.v1
title: Leech heartbeat circuit synapse data

description: Data used for spike-trigered averaging to estimate synaptic conductances between premotor inhibitory interneurons and motor neurons. Can be used with HN-HE-synapses-STA software published on Github (see link below).<br>
DOI: 10.17632/7m9v6hxzrr
title: Amphiprion percula vocalizations data

description: This dataset contains detailed measurements of acoustic parameters and behavioural observations from social groups of Amphiprion percula, a species of anemonefish. The data were collected in situ from wild anemonefish groups in reefs of Papua New Guinea. Acoustic parameters were calculated using Raven Pro. This includes information on the behaviour related to acoustic signals, reef, group ID, social rank of the individuals and body size.
DOI: 10.17632/k3yvcw2v5b
title: Image Dataset of Paper-Based Biosensor for CA19-9 Detection Using Melanin Nanoparticles: Machine Learning and Deep Learning Analysis for Pancreatic Cancer Biomarker Monitoring

description: This dataset focuses on the development and evaluation of a paper-based colorimetric biosensor utilizing natural melanin nanoparticles derived from cuttlefish for the detection of the pancreatic cancer biomarker CA 19-9. The melanin nanoparticles were extracted, purified, and functionalized with glutaraldehyde to enable antibody immobilization, as confirmed by ATR-FTIR and XPS analyses. Anti-CA 19-9 antibodies were conjugated to the functionalized surface, and the biosensor's interaction with varying concentrations of CA 19-9 solutions—specifically 0.025%, 0.05%, 0.075%, 0.1%, 1%, 2%, 3%, 4%, and 5%—produced distinct color changes. These changes were analyzed using optical readers and digital image processing techniques. The dataset includes images captured via smartphone, featuring both control (represents the blank, unmodified surface) and target regions (the modified surface that interacts with the CA 19-9 solution) to minimize environmental variability, and provides quantitative measurements of color intensity changes corresponding to the CA 19-9 concentrations. The biosensor demonstrated high selectivity, reliability, and sensitivity, validated through repeated measurements and cross-reactivity assays. This dataset supports the development of machine learning and image processing algorithms for accurate, portable, and cost-effective biomarker detection, with potential applications in early cancer diagnosis and monitoring.
DOI: 10.6084/m9.figshare.22826417.v2
title: Annual dry season crop calendar of paddy in Indonesia from 2001 – 2021 with 1-km spatial resolution

description: This dataset contains the annual dry season crop calendar of paddy in Indonesia from 2001 - 2021 with 1-km spatial resolution. Developed using model-based approach using the MODIS-Terra dataset (MOD13A2). This dataset includes the information about the Start of Season (SOS) or the planting dates, the Peak of Season (POS), and the End of Season (EOS) or harvesting dates as well as the total number of cropping season each year which includes both the wet and the dry cropping season. This dataset offers information at a finer spatiotemporal resolution to enable studies on agricultural fields under climate change.
DOI: 10.6084/m9.figshare.26002471.v1
title: Supplementary Material for: A novel method to localize patency capsule by ileo-colonoscopy facilitates endoscopic assessment of the small and large intestine in patients with Crohn’s disease

description: Introduction: Patients with Crohn’s disease (CD) require an assessment of small bowel lesions, while difficulties exist in performing small intestinal examinations especially in small-sized medical offices. Small bowel capsule endoscopy (SBCE) is handy and can be performed in most clinical settings. The only drawback of SBCE is a requirement of patency testing prior to the exam because it sometimes requires CT scanning to localize the ingested patency capsule (PC), which may be a substantial burden for the patient. We have developed a novel PC detection system named PICS (Patency capsule, Ileo-Colonoscopy and Small bowel capsule endoscopy) method by which we can avoid CT scanning. In the PICS method, Ileo-Colonoscopy (ICS) is performed after 30 to 33 hours of PC ingestion and the PC can be localized by ICS in patients who have not excreted the PC, and the entire intestine can be examined in combination with subsequent SBCE without additional bowel preparation. The aim of this study was to assess the usefulness and safety of the PICS method for CD patients.
Methods: CD patients who underwent PICS method from April 2021 to March 2023 were reviewed for clinical data, outcome of PICS method including the rates of PC detection by ICS, the number of patients underwent SBCE, and adverse events. Lewis score was used to assess SBCE results. 
Results: The PICS method was performed in 54 patients. The median age of patients was 28.5 years old and 64.8% of them were ileo-colic type. The median disease duration was 10.5 months and 24.1% had history of small bowel resection. Five cases (9.3%) confirmed gastrointestinal patency by ICS and none of the cases required CT scanning. One patient who could not be confirmed patency by ICS, and the other patient who excreted PC but was found ileal stenosis by ICS did not undergo SBCE. Remaining 52 patients received SBCE and the median Lewis score of them was 0 (IQR 0, 450). There were no adverse events including small bowel obstruction by PC and SBCE retention in this series. 
Conclusion: The PICS method is not only feasible and safe but also convenient to assess disease extent in patients with CD. By localizing PC with ICS, additional CT scanning could be unnecessary for SBCE, which benefits both physicians and CD patients.
DOI: 10.6084/m9.figshare.26058649.v1
title: Boosting the Electrochemical Oxygen Reduction Reaction to Produce Hydrogen Peroxide by an Efficient Electrocatalyst Coupled with Organic Oxidation

description: The electrochemical oxygen reduction reaction (ORR) to produce hydrogen peroxide (H2O2) is appealing due to its sustainability. However, its efficiency is compromised by the competing 4e− ORR pathway. In this work, we report a hierarchical carbon nanosheet array electrode with a single-atom Ni catalyst synthesized using organic molecule-intercalated layered double hydroxides as precursors. The electrode exhibits excellent 2e− ORR performance under alkaline conditions and achieves H2O2 yield rates of 0.726 mol gcat−1 h−1 in the H-cell and 5.498 mol gcat−1 h−1 in the flow cell, outperforming most reported catalysts. The experimental results show that the Ni atoms selectively adsorb O2, while carbon nanosheets generate reactive hydrogen species (H*), synergistically enhancing H2O2 production. Furthermore, a coupling reaction system integrating the 2e− ORR with ethylene glycol oxidation significantly enhances H2O2 yield rate to 7.3 mol gcat−1 h−1 while producing valuable glycolic acid. Techno-economic analysis validates the economic viability of this system.
DOI: 10.17632/fx8394xnh4
title: POC-NaVoP

description: Preoperative Oral Carbohydrate for Nausea and Vomiting Prevention
ClinicalTrials.gov Identifier: NCT04069806
DOI: 10.6084/m9.figshare.13564730.v1
title: IGA1008_W82v4_ortholog_relationships

description: Orthologous relationships between gene annotations in IGA1008 and W82v4. The gene annotation version used for W82v4 was "ann1"
DOI: 10.6084/m9.figshare.14130389.v1
title: Buffalo ddRAD genotypes

description: Plink files containing 237,762 SNP genotypes of six buffalo breeds of India.Family codes:BHA = BhadawariMEH = MehsanaMUR = MurrahPAN = PandharpuriSUR = Surti<br>TOD = Toda<br>
DOI: 10.6084/m9.figshare.25954066.v3
title: Evaluation of Approach Using Meteor

description: The success of test refactoring, especially in eliminating test smells, depends on evaluating the refactored test afterward to ensure it retains its original behavior, specifically its ability to detect defects. Test smells point to potential problems in test code. Although various methods in the literature suggest ways to evaluate test behavior, they often lack practical tool support for industry use. To address this gap, <b>METEOR </b>is released, a tool model that uses mutation testing to assess the behavior of refactored tests. <b>METEOR </b>is implemented as a plugin for the <i>Eclipse IDE </i>and integrates with <i>PITclipse</i>, simplifying the collection and analysis of mutation testing data to effectively evaluate test refactoring.
DOI: 10.6084/m9.figshare.28911608.v1
title: Antimicrobial resistance genes from SA urban WWTPs.xlsx

description: This dataset includes detailed metadata on antimicrobial resistance genes (ARGs) detected in metagenomic DNA from wastewater and riverine environments in Tshwane, South Africa. Each entry provides sample-level information including sample ID, sample type, ARG identity, ARG family, resistance class, and abundance. The data supports the analysis presented in the PhD thesis titled: <b>An ecological approach to risk characterisation of antimicrobial resistance from South African urban wastewater and freshwater microbiomes</b>. This dataset is intended for transparency, reproducibility, and further research use
DOI: 10.6084/m9.figshare.6815705.v4
title: jdft_2d.json

description: 2D materials
DOI: 10.6084/m9.figshare.7089131.v1
title: Library Services for Electronic Lab Notebooks

description: University of Pittsburgh librarians at the Health Sciences Library System and the University Library System conducted an 18-question online survey to learn what roles other academic and health sciences libraries are playing at their institutions in providing services and support to their users regarding electronic lab notebooks (ELNs). <br><br>The survey was administered via Qualtrics. Questions included self-identification of being a health sciences library, whether their university offers an enterprise ELN license, if so which one and when did they start offering it, involvement in the selection process, types of services provided, service utilization, library staff involvement and workload, and whether other units at the university provide support. Questions were a mix of multiple choice and free text. Survey logic was used so depending on their answers respondents did not see all questions.<br><br>Participants were recruited from September 7, 2017 through October 6, 2017. An email message and reminder were targeted to numerous library listservs requesting participation from ONLY academic libraries, including those in the health sciences. The email also stated "The information gathered will be used in developing our service model, and we also expect to incorporate it into one or more presentations or articles for publication. Although we ask for information identifying your library/institution, it will only be used for data analysis purposes. No library/institution will be identified publicly or linked to any particular response." We therefore removed any identifying responses from the data response spreadsheet posted here. Q1 and Q9 were removed, and identifying information within Q10, Q13, and Q18 was redacted.<br>The CSV file contains de-identifed survey responses (indicated as #####). We did not include incomplete data (surveys with the majority of questions unanswered) and those responses that did not meet inclusion criteria of an academic/medical library. Also included is a PDF of the survey questions. <br><br>This data was described here: Iwema, C.L. and Ratajeski, M.A. (2018, May). Creating New Research Services: Library Support for Electronic Lab Notebooks. Paper presented at Medical Library Association Annual Conference, Atlanta, GA.<br>
DOI: 10.6084/m9.figshare.7435325.v1
title: Supplementary Material for: RNA-Seq Analyses of the Role of miR-21 in Acute Pancreatitis

description: <b><i>Background/Aims:</i></b> Our previous study demonstrated that a deficiency of microRNA 21 (miR-21) protects mice from acute pancreatitis, yet the underlying molecular networks associated with miR-21 in pancreatitis and pancreatitis-associated lung injury remain unexplored. <b><i>Methods:</i></b> We used next generation sequencing to analyze gene expression profiles of pancreatic tissues from wild-type (WT) and miR-21 knockout (KO) mice treated with caerulein by using a 1-day treatment protocol. The Database for Annotation, Visualization, and Integrated Discovery gene annotation tool and Ingenuity Pathway Analysis were used to analyze the molecular pathways, while quantitative real-time PCR, western blotting, and immunohistochemistry were used to explore the molecular mechanisms. <b><i>Results:</i></b> We identified 152 differentially expressed genes (DEGs) in pancreata between WT and KO mice treated with caerulein. Cellular biogenesis and metabolism were the major pathways affected between WT and KO mice, whereas cell death and inflammatory response discriminated between WT and KO mice under acute pancreatitis. We validated 16 DEGs, consisting of 6 upregulated genes and 10 downregulated genes, involved in pancreatic injury. In particular, the upregulation of Pias3 and downregulation of Hmgb1 in KO pancreata coincided with a reduced severity of pancreatitis. In addition, we found Hmgb1 stimulation resulted in the overexpression of miR-21 in peripheral blood mononuclear cells, and deletion of miR-21 led to a reduction of caerulein-induced acute pancreatitis-associated lung injury by repressing Hmgb1 expression. <b><i>Conclusion</i></b><b><i>:</i></b> Our data support the hypothesis that miR-21 modulates the inflammatory response during acute pancreatitis through the upregulation of Pias3 and downregulation of Hmgb1. Our findings further underscore a role for miR-21 in the promotion of acute pancreatitis.
DOI: 10.17632/zdhc7fyzr3
title: Wilms tumor dataset: socio-demographic, clinicopathological, histological features and disease progression of 84 Moroccan infants

description: Wilms tumour (WT), also known as nephroblastoma, is a malignant kidney tumour that accounts for 5% of all paediatric cancers and 95% of childhood malignant renal neoplasms, with an incidence of 1 in 10,000 children. This clinical dataset provides information from 84 Moroccan patients diagnosed with Wilms tumor, and treated following the SIOP 2001 protocol. The key variables include demographic and epidemiological data (including gender, age, clinical history and comorbidities), clinical and paraclinical features (such as medical complaint, symptoms, tumor features, metastatic extensions, and anatomopathological findings), treatment regimen (involving nephrectomy, chemotherapy and x-ray treatment), clinical evaluation and patient prognosis (encompassing complete remission, relapse or mortality). The dataset can be used to relate clinical characteristics to tumor features and progression under therapy for risk stratification and better treatment management.
DOI: 10.6084/m9.figshare.11881050.v1
title: ARIA Damage Proxy Map: Japan, Typhoon Hagibis, Tokyo, 12 Oct 2019, v0.4

description: The Advanced Rapid Imaging and Analysis (ARIA) team at NASA's Jet Propulsion Laboratory and California Institute of Technology in Pasadena, California, in collaboration with the Earth Observatory of Singapore (EOS), created this Damage Proxy Map (DPM) depicting areas in Japan that are likely damaged (shown by red and yellow pixels) as a result of Typhoon Hagibis that made landfall as a Category 3 storm Saturday night (October 12) local time. The map was derived from Synthetic Aperture Radar (SAR) data acquired around 6am (local time) on October 13, 2019 by the Copernicus Sentinel-1 satellites operated by the European Space Agency (ESA). The pre-event images were taken before (October 7, 2019) and the post-event image was acquired within 12 hours after the hurricane's landfall. The map covers an area of 250 by 350 kilometers, indicated with the big red polygon. Each pixel measures about 30 meters across. The color variation from yellow to red indicates increasingly more significant ground surface change. Media reports provided anecdotal preliminary validation. This damage proxy map should be used as guidance to identify damaged areas, and may be less reliable over vegetated areas and flooded areas. For example, the scattered single colored pixels over vegetated areas may be false positives, and the lack of colored pixels over vegetated areas does not necessarily mean no damage. Copyright: Contains modified Copernicus Sentinel data (2019) processed by ESA, the ARIA team at NASA-JPL and Caltech, and EOS. This task was funded by NASA Disasters Program.
DOI: 10.6084/m9.figshare.28334948.v2
title: Distributional Outcome Regression via Quantile Functions and its Application to Modelling Continuously Monitored Heart Rate and Physical Activity

description: Modern clinical and epidemiological studies widely employ wearables to record parallel streams of real-time data on human physiology and behavior. With recent advances in distributional data analysis, these high-frequency data are now often treated as distributional observations resulting in novel regression settings. Motivated by these modeling setups, we develop a distributional outcome regression via quantile functions (DORQF) that expands existing literature with three key contributions: (i) handling both scalar and distributional predictors, (ii) ensuring jointly monotone regression structure without enforcing monotonicity on individual functional regression coefficients, (iii) providing statistical inference via asymptotic projection-based joint confidence bands and a statistical test of global significance to quantify uncertainty of the estimated functional regression coefficients. The method is motivated by and applied to Actiheart component of Baltimore Longitudinal Study of Aging that collected one week of minute-level heart rate (HR) and physical activity (PA) data on 781 older adults to gain deeper understanding of age-related changes in daily life heart rate reserve, defined as a distribution of daily HR, while accounting for daily distribution of physical activity, age, gender, and body composition. Intriguingly, the results provide novel insights in epidemiology of daily life heart rate reserve. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.6084/m9.figshare.16802329.v1
title: Positive and adverse childhood experiences: Association with risky behaviors and various well-being outcomes among Chinese university students in Hong Kong

description: Positive and adverse childhood experiences: Association with risky behaviors and various well-being outcomes among Chinese university students in Hong Kong
DOI: 10.17632/ffjxngd2z2
title: Current Evidence on Safety of JAK Inhibitors in Pregnancy and Lactation Supplementary Materials

description: Supplementary Table I and Table II for Current Evidence on Safety of JAK Inhibitors in Pregnancy and Lactation
DOI: 10.6084/m9.figshare.12520034.v1
title: Supplementary material 5: maximum likelihood trees and in-/output files (molecular data)

description: Resulting maximum likelihood trees as TREE-files together with the corresponding input-/output-files from the analyses using molecular data.
DOI: 10.6084/m9.figshare.25289011.v1
title: MIBI-TOF breast cancer data [Risom et al.]

description: An AnnData object for the MIBI-TOF breast cancer data from Risom et al.The MIBI-TOF breast cancer data [Risom et al., 2022] are available in a public Mendeley data repository: https: //data.mendeley.com/datasets/d87vg86zd8.
DOI: 10.6084/m9.figshare.28511906.v1
title: ECommerce_Health_Products_Ad_Effect_Data.xlsx

description: <b>Disclaimer: This data is only for academic research and is not intended for commercial or other purposes. If you want to cite this data, please first apply to the author for approval.</b>This study utilizes a random sampling method to collect online survey data, targeting the 34 provincial-level administrative regions of China, ensuring a high degree of representativeness. The survey includes a screening question at both the beginning and the end to eliminate irrelevant data from careless or bot responses. A total of 1,500 electronic surveys were sent to participants on Chinese e-commerce platforms, with 297 incomplete or invalid responses removed. This resulted in 1,203 valid responses, yielding an 80.2% response rate. Among the valid responses, 636 are from male participants (52.9%) and 567 are from female participants (47.1%), representing a balanced gender distribution.
DOI: 10.6084/m9.figshare.4986545.v2
title: Simulations of secondary contact after range expansion and a barrier to gene flow

description: We use coalescent simulations to investigate if DNA data sampled at present can provide enough information to distinguish between secondary contact following range expansion and a barrier to gene flow in an isolation-by-distance model.<br><br>The data was simulated with ms (Hudson, Bioinformatics, 2002). The command that invoked ms (including the seed) and the simulated data are provided. For each simulation, the ms output was parsed into two files that are directly used for the analysis.<br>100 unlinked loci were simulated, where each of them contains 100 SNPs. For each of the 100 demes, 4 or 20 chromosomes are simulated.<br>A detailed description of the archives and files can be found in readme.txt.<br>
DOI: 10.6084/m9.figshare.5056441.v1
title: Leaf_coordinates.zip

description: This file directory includes the outlines of 182,707 leaves analyzed in the manuscript "<b>Persistent homology demarcates a leaf morphospace</b>", by Mao Li et al. Separate folders contain text files with x,y coordinates for the leaves from each indicated plant group. Within each folder original x,y coordinates and scaled coordinates are provided.<br>Please cite the following authors and sources from which the leaf shapes are derived:<br>Li, Mao, et al. "Persistent homology demarcates a leaf morphospace." <i>bioRxiv</i> (2017): 151712.<br><br>Huff, Peter M., Peter Wilf, and Ebere J. Azumah. "Digital future for paleoclimate estimation from fossil leaves? Preliminary results." <i>Palaios</i> 18.3 (2003): 266-274.<br><br>Royer, Dana L., et al. "Correlations of climate and plant ecology to leaf size and shape: potential proxies for the fossil record." <i>American Journal of Botany</i> 92.7 (2005): 1141-1151.<br><br>Peppe, Daniel J., et al. "Sensitivity of leaf size and shape to climate: global patterns and paleoclimatic applications." <i>New Phytologist</i> 190.3 (2011): 724-739.<br><br>Kumar, Neeraj, et al. "Leafsnap: A computer vision system for automatic plant species identification." <i>Computer Vision–ECCV 2012</i> (2012): 502-516.<br><br><b>Relevant links:</b><br>Pre-print: https://doi.org/10.1101/151712<br>Digital leaf physiognomy: http://droyer.web.wesleyan.edu/DigitalLeafPhysiognomy.htm<br>Leafsnap: http://leafsnap.com/