cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3dk6r/3
title: Reneerkens et al 2016 Ecol&Evol -Growth curve

description: Table of body mass of Sanderling (Calidris alba) chicks of varying ages (in days) at Zackenberg and Hochstetter Forland (northeast Greenland). Individuals are identified by their ringnumber and the family (NestID). Further information is found in the methods section of the publication.
DOI: 10.5061/dryad.3dk6r/4
title: Reneerkens et al 2016 Ecol&Evol -Sanderling hatch dates

description: Table of hatch dates of Sanderling (Calidris alba) clutches in Zackenberg, northeast Greenland. Hatch dates of clutches that successfully hatched are observed hatch dates. Hatch dates of clutches that did not hatch were estimates based on egg flotation, and those of broods are based on the estimated age of the chicks using a species-specific growth curve of body mass. Further information is found in the methods section of the publication.
DOI: 10.5061/dryad.3dk6r/5
title: Reneerkens et al 2016 Ecol&Evol -Snow cover

description: Table of snow cover on the Aucella mountain in the Zackenberg monitoring area. The location is “Aucella_S_low”, where most Sanderling (Calidris alba) clutches were found and for which a most complete dataset existed. Snow cover is given as the percentage of the total area in the region per date. Data have been collected within the GeoBasis programme of the Greenland Ecosystem Monitoring and are publicly available via http://data.g-e-m.dk/, where also information can be found about the location and size of the daily photographed area. Further information is found in the methods section of the publication.
DOI: 10.5061/dryad.3dk6r/6
title: Reneerkens et al 2016 Ecol&Evol -Arthropod size

description: Table of sizes (and biomass) of individual arthropods collected in Zackenberg, summer 2007. Each of the 6 plots (ART5, ART 7, INS1, INS2, INS3 and INS4) consisted of a line of 10 yellow pitfall traps at ca. 1 meter distance from each other. Occasionally, arthropods were identified to the order and, if possible, family level. Identified orders were Acari (ACAR), ARAN, Coleoptera (COLE), Diptera (DIPT), Hymenoptera (HYME), and Lepidoptera (LEPI). Identified families, within the before mentioned orders, were Apidae, genus Bombus (BOMB), Calliphoridae (CALL), Chironomidae (CHIR), Culicidae (CULI), Gnaphosidae (GNAP), Hemiptera (HEMI), Heteroptera (HETE), Linyphiidae (LINY), Lycosidae (LYCO), Muscidae (MUSC), Noctuidae (NOCT), Nymphalidae (NYMP), Parasitica (PARA), Phoridae (PHOR), Pieridae (PIER), Sciaridae (SCIA), Syrphidae (SYRP), Thomisidae (THOM), Tipulidae (TIPU) and Trichoceridae (TRIC). LARV stands for larvae of the specified order or families. Further information is found in the appendix S1 of the publication.
DOI: 10.5061/dryad.481g3/1
title: Empirical vs theoretical skin resistances

description: This file contains the raw data of skin resistances calculated from theoretical and empirical methods.
DOI: 10.5061/dryad.481g3/2
title: Empirical vs theoretical estimates of the boundary layer vs flow rate
DOI: 10.5061/dryad.481g3/3
title: Empirical vs theoretical estimates of the boundary layer vs VPD
DOI: 10.5061/dryad.481g3/4
title: Estimates of activity and energy balance with and without the boundary layer
DOI: 10.5061/dryad.4pq11/1
title: MacGregoretal_Traits&Genotypes_FE-2016
DOI: 10.5061/dryad.4r8q3/1
title: Georgian Bay muskellunge microsatellite genotypes

description: Microsatellite genotypes of muskellunge (Esox masquinongy) from native populations in Lake Huron, Ontario
DOI: 10.5061/dryad.52mb6/1
title: Experimental data and MATLAB code

description: This archive contains the experimental data and MATLAB code used in the publication named. Three folders are included containing: raw and processed data files; MATLAB functions for parameter estimation; and MATLAB functions for the generation of power law random walks. The README file provides additional information about these folders and the files contained within.
DOI: 10.5061/dryad.56cn4/1
title: Description of Data and R code Files

description: This file contains meta information of the four data files and one file with R scripts used for data analysis and making Figures.
DOI: 10.5061/dryad.56cn4/2
title: Data File 1. Diaspore traits

description: For each of the study's tree species, mass, area, and descent rate for 15 individual diaspores.
DOI: 10.5061/dryad.56cn4/3
title: Data File 2. Measured dispersal distances

description: For each of the study's tree species, the number of seeds found at each distance, measured in transects from the parent trunk (all transects combined).
DOI: 10.5061/dryad.56cn4/4
title: Data File 3. Parent tree information

description: For each of the study's tree species,  information of location, DBH, maximum height, median height, crown area, crop size, and seed shadow area of the tree.
DOI: 10.5061/dryad.56cn4/5
title: Data File 4. Transect data

description: For each of the study's tree species, the number of seeds found in each quadrat at each distance in each of six (eight) directions from the parent trunk.  Area of quadrat is provided.
DOI: 10.5061/dryad.7g8cn/1
title: Supporting Information

description: The file contains four figures and 1 table to provide details of the experiments and support the discussion in the paper
DOI: 10.5061/dryad.7g8cn/2
title: adhesion force data

description: The adhesion force data obtained from AFM measurements
DOI: 10.5061/dryad.81tf9/1
title: Supplementary_materials_S2

description: Complete R code for all analyses and figures used in the paper.
DOI: 10.5061/dryad.81tf9/3
title: Supplementary_materials_S4

description: Individual areas for each terrestrial region through the Mesozoic, as used to create figure 1a in original paper. Please consult Supplementary_materials_S2.R for R code to create this dataset from the original polygon data.
DOI: 10.5061/dryad.8vj84/1
title: Zm-PH207-REFERENCE_NS-UIUC_UMN-1.0_protein

description: Protein multifasta file for the PH207 version 1.0 draft genome assembly
DOI: 10.5061/dryad.8vj84/2
title: Zm-PH207-REFERENCE_NS-UIUC_UMN-1.0_transcript

description: Transcript multifasta file for the PH207 version 1.0 draft genome assembly
DOI: 10.5061/dryad.8vj84/3
title: Zm-PH207-REFERENCE_NS-UIUC_UMN-1.0

description: Annotation GFF file for the PH207 version 1.0 draft genome assembly
DOI: 10.5061/dryad.8vj84/4
title: Zm-PH207-REFERENCE_NS-UIUC_UMN-1.0

description: Chromosome multifasta file for the PH207 version 1.0 draft genome assembly
DOI: 10.5061/dryad.9qk7d/1
title: Environmental Variables

description: Values of the environmental variables at the sampling locations. Bio1-19 and elevation were obtained from WorldClim. Slope and aspect were calculated from elevation. Tree2001 (percent tree cover) and LAI variables were obtained from the Global Landcover facility. QSCAT variables were computed from raw data obtained from the NASA SCP data set. Road density was computed from the Digital Chart of the World. Human population density was obtained from the Gridded Population of the World data set. For detailed methods, please see the online supporting information.
DOI: 10.5061/dryad.9qk7d/2
title: Morphological measurements

description: Morphological measurements for adult males and females collected in the field.
DOI: 10.5061/dryad.9qk7d/3
title: Microsatellite genotypes

description: Microsatellite genotypes (fragment lengths). Two columns per locus; one for each allele. 0 = no data. Samples were collected in the field between 2007-2015. Allele calling performed with GeneMarker V2.4.1 (Softgenetics, State College, PA, USA).
DOI: 10.5061/dryad.ck5c0/1
title: RebkeBeckerColchero_ProceedingsB_All_Data

description: This folder includes the following files: RebkeBeckerColchero_ProceedingsB_Data.csv - This is the main data file used for the paper. It includes the individual-based data of common terns (Sterna hirundo). RebkeBeckerColchero_ProceedingsB_AddData_Ringed.csv - This is an additional data file used for the paper. It includes a list of partners appearing in the main data file in the column PartnerID, that were marked by ring only and not by transponder. RebkeBeckerColchero_ProceedingsB_AddData_Nests.csv - This is an additional data file used for the paper. It includes a list of the breeding year and the corresponding number of nests in the colony.
DOI: 10.5061/dryad.dc50c/1
title: Head et al_Environment dependent mate choice_ Data for DRYAD

description: This is the data for the manuscript “Environmental change mediates mate choice for an extended phenotype, but not for mate quality ” by ML Head, RJ Fox and I Barber.Data was collected by MLH. All methods are described in the associated manuscript. Column headings are described in the excel spreadsheet.
DOI: 10.5061/dryad.g5rq3/1
title: R script for analyzing Sao Tome transect data

description: This R script contains the code used when analyzing the "data_saotome_transect.csv" data table. This is the primary script used to analyze fertility of D. yakuba along the transect on Sao Tome.
DOI: 10.5061/dryad.g5rq3/2
title: R script used to analyze Bioko transect data

description: This R script contains code used to analyze fertility along the Bioko transect.
DOI: 10.5061/dryad.hj13q/1
title: Tern flight data

description: Data on flight speed measurements of five species of terns.
DOI: 10.5061/dryad.j6c3v/1
title: Data - Polymyxin B modulates the activity of Lipooligosaccharide E. coli B; Kicielińska and all
DOI: 10.5061/dryad.j7v42/1
title: Manila jurtina wing spots

description: This file contains wing spot data for individual meadow brown butterfly specimens.
DOI: 10.5061/dryad.j7v42/2
title: Maniola jurtina AFLP data

description: AFLP genotypes for the meadow brown butterfly.
DOI: 10.5061/dryad.kt5nq/1
title: Cumulative_germination_count_of_natural_accessions

description: This file provides triplicate raw data of cumulative germination counts in 18 accessions phenotyped for their germination speed. Tab 1 shows germination counts of the two parental accessions (Bs-2 and Col-0), and Tab 2 shows germination counts of a worldwide collection of 16 accessions.
DOI: 10.5061/dryad.m563r/1
title: DATASET

description: CSV containing raw sampling data including date and position, among others.
DOI: 10.5061/dryad.n36st/1
title: MER align

description: the fasta file of the aligned 2993 DNA barcoding sequences
DOI: 10.5061/dryad.q9c54.2
title: Data from: Consensus forecasting of intertidal seagrass habitat in the Wadden Sea
DOI: 10.5061/dryad.q9c54.2/1.2
title: distance to land (geotif, epsg:3035)

description: used for imputing sediment
DOI: 10.5061/dryad.q9c54.2/2.2
title: mean exposure time (geotif, epsg:3035)

description: Exposure time of the intertidal flats: mean fraction of time (between 0 and 1) that the seafloor is exposed to air.
DOI: 10.5061/dryad.q9c54.2/3.2
title: intertidal regions (geotif, epsg:3035)

description: Intertidal regions in the Wadden Sea: 1. Denmark; 2. Schleswig-Holstein; 3. Lower Saxony; 4. Netherlands
DOI: 10.5061/dryad.q9c54.2/4.2
title: seagrass occupation (geotif, epsg:3035)

description: Proportion of the 17 years that a cell was occupied. These data cover Schleswig-Holstein.
DOI: 10.5061/dryad.q9c54.2/5.2
title: bottom shear stress (geotif, epsg:3035)

description: mean bottom shear stress due to currents
DOI: 10.5061/dryad.q9c54.2/6.2
title: bottom shear stress Q75 (geotif, epsg:3035)

description: 75th percentile of bottom shear stress due to currents
DOI: 10.5061/dryad.q9c54.2/7.2
title: slope of seaflooor (geotif, epsg:3035)
DOI: 10.5061/dryad.tk273/3
title: Data on time to capture during infection among captive finches

description: Please see README file for variable descriptions.
DOI: 10.5061/dryad.vm11r/1
title: Truffle genotyping data

description: Open document files (.odt) of genotyping data (11 to 13 microsatellites and mating-type) at three different sampling scales (described in the manuscript). Each file contain a first slide with the description of column names and several slides for the data from the different samplings sites (brûlés or truffle-grounds).
DOI: 10.5061/dryad.vm11r/2
title: zygotes genotypes & script

description: Zygotic genotypes and R script to estimate heterozygote deficits from the zygotic genotypeobtained by spore extraction from Tuber melanosporum fruitbodies sampled at brûlé scale (PB1, PB2, PB3, SB1, SB2). For each locus, the first allele corresponds to the maternal one (genotype of the gleba) and the second one to the paternal one (detected after spore extraction).
DOI: 10.5061/dryad.1r8c2/1
title: Zip file with trait data, phylogeny, and supplemental tables

description: data.*	 				Leaf anatomical and physiological traits from 19 tomato taxa (in Excel and CSV formats)globalGm.R				R code to make Figure 5 and statistically compare LMA-gm relationship in tomatoes to a global datasetTomato18cos_ultra.tre	18-gene ultrametric phylogenetic tree in Newick formatTableS1.csv				Key to species name abbreviations in data table and treeTableS3.csv				Global dataset of gm and LMA
DOI: 10.5061/dryad.22dt8/1
title: BigFert-Infection-Coordinates-Weight
DOI: 10.5061/dryad.3bh66/2
title: 1 ha data file

description: Data file of vegetation vertical structure and physical, soil, socioeconomic, urban form, and landscape structure variables at a 1 ha spatial resolution across Brisbane, Australia.
DOI: 10.5061/dryad.481g3/10
title: Energy without realistic resistances

description: Net energy balance (J) without a boundary layer or realistic skin resistance to water loss over a single night in August.
DOI: 10.5061/dryad.481g3/11
title: Energy with realistic resistances to water loss

description: Net energy balance (J) with realistic resistance to water loss and skin resistance to water loss over a single night in August.
DOI: 10.5061/dryad.481g3/5
title: Positive or negative energy balance against VPD
DOI: 10.5061/dryad.481g3/6
title: Skin resistance values across taxa
DOI: 10.5061/dryad.481g3/7
title: Python code for biophysical model

description: This code requires hourly temperature and VPD ascii files. It will compile each file individually and calculate estimates of activity and energy for a single night. This program should not be used for monthly or yearly estimates of activity and net energy balance unless a user has provided substantial modifications.
DOI: 10.5061/dryad.481g3/8
title: Activity without realistic resistances to water loss

description: Estimates of activity (in seconds) without a boundary layer or realistic skin resistance to water loss over a single night in August.
DOI: 10.5061/dryad.481g3/9
title: Activity with realistic resistances

description: Estimates of activity (seconds) with a boundary layer and average skin resistance (5 sec/cm) over a single night in August.
DOI: 10.5061/dryad.56cn4/6
title: File 5. R scripts

description: R scripts 1) to make Figures 2 and 5; 2) to fit alternative models to explain variation among diaspores in the rate of descent in still air (results from this analysis are in Tables 2 and 3); and 3) to fit alternative models to explain variation among species in seed shadow characteristics using tree and diaspore traits  (results from this analysis are included in Tables 4 and S11).
DOI: 10.5061/dryad.593cc/1
title: fluTwitterData

description: Influenza and Twitter data used in this study.
DOI: 10.5061/dryad.64715/1
title: Two Dimensional Gel Electrophoresis (2DE) of extracellular protein of Talaromyces verruculosus SGMNPf3

description: The scientific data summarizes identified peptide spots from two dimensional gel electrophoresis. Identified spots are secretory products from the cellulolytic activity of Talaromyces verruculosus SGMNPf3. Peptide spots were identified by LC MS/MS and MALDI TOF-MS and detail characteristics of spots are provided.
DOI: 10.5061/dryad.69g60/1
title: DeKUWC Audio Recordings 2016

description: We provide acoustic recordings from the Dedan Kimathi University Wildlife Conservancy (DeKUWC) in the Mt. Kenya ecosystemobtained using a low cost acoustic recorder. A total of 2701 minute long recordings are provided including both daytime and nighttime recordings.We present an annotation of a subset of the daytime recordings indicating the bird species present in the recordings. The dataset contains recordings of at least 36 bird species. In addition, the presence of a few nocturnal species within the conservancy is also confirmed.
DOI: 10.5061/dryad.7f7d1/2
title: Plos_one_SB_data

description: The age column is deleted.
DOI: 10.5061/dryad.7mv7v/1
title: .zip archive

description: Primers, alignments, BEAST xml input files, and results files
DOI: 10.5061/dryad.81k11/2
title: rawData

description: Raw data before any statistical analyses
DOI: 10.5061/dryad.81k11/3
title: PatrolDog_GGM_AssociationMatrix

description: Association matrix of raw correlations for patrol dogs shown in the network figure
DOI: 10.5061/dryad.81k11/4
title: DetectionDog_GGM_AssociationMatrix

description: Association matrix of raw correlations for detection dogs shown in the network figure
DOI: 10.5061/dryad.81k11/5
title: finalMIdata_averaged_rounded

description: Final set of multiply imputed data (averaged over 15 multiply imputed data sets and rounded to be integers)
DOI: 10.5061/dryad.81k11/6
title: R script file

description: R script to run the analyses and reproduce the figures in the article.
DOI: 10.5061/dryad.81k11/7
title: Supplementary_Material

description: Supplementary Material for the article, including further details and results of the statistical analyses not included in the manuscript.
DOI: 10.5061/dryad.81tf9/2
title: Supplementary_materials_S3

description: RData file containing polygon data for all land regions through the Mesozoic. Use in conjunction with R code contained in Supplementary_materials_S2.R in this same repository.
DOI: 10.5061/dryad.8j36j/1
title: 1000 posterior BEAST phylogenies of Galeommatoidea
DOI: 10.5061/dryad.8j36j/2
title: Consensus BEAST phylogeny of Galeommatoidea
DOI: 10.5061/dryad.8j36j/3
title: Landmarks and semi-landmarks for all specimens

description: TPS file containing one landmark and 45 semi-landmarks for all specimens. Image IDs correspond to phylogenetic tip IDs on the phylogeny.
DOI: 10.5061/dryad.d4k51/1
title: Phylogenetic tree of aquatic plant species

description: The phylogenetic tree used for the phylogenetic data analyses: to calculate the phylogenetic signal (Blomberg's K) and to perform PGLS (phylogenetic generalised least squares). The method of how this tree was constructed is described in the manuscript.
DOI: 10.5061/dryad.d4k51/2
title: Plant species, traits and herbivore consumption rates

description: Plant species, traits and herbivore consumption rates.
DOI: 10.5061/dryad.d4r50/1
title: Align RAD-seq reads

description: Align RAD-seq reads to bedbug reference genome using GSNAP
DOI: 10.5061/dryad.d4r50/2
title: Remove PCR duplicates

description: Bash script to remove PCR duplicates using Stacks 1.21 clone_filter module
DOI: 10.5061/dryad.d4r50/3
title: Stacks refmap pipeline

description: Make Stacks catalogue from reference mapped data
DOI: 10.5061/dryad.d4r50/4
title: QTL mapping for pyrethroid resistance

description: Rscript that uses rqt_final_cross.csv to perform qtl mapping for pyrethroid resistance using R/qtl
DOI: 10.5061/dryad.d4r50/5
title: Final cross data

description: Filtered and corrected linkage map data for use in QTL mapping
DOI: 10.5061/dryad.d4r50/6
title: Construct linkage map

description: Rscript for constructing a linkage map from filtered raw data (bedbugs_raw_filtered.csv) using Rqtl
DOI: 10.5061/dryad.d4r50/7
title: Filtered raw cross data

description: Genotype data output by Stacks that has been filtered to include loci only informative for QTL and linkage map analysis (i.e. ab/ab in both F1 parents)
DOI: 10.5061/dryad.f5r3k/1
title: Log response ratio effect sizes and covariates for meta-analysis.

description: Log response ratio effect sizes of community-level diversity responses to experimental warming, with covariates extracted from the literature for for meta-analysis.
DOI: 10.5061/dryad.f5r3k/2
title: oik.03688.metadata

description: Field names and descriptions for data file: Log response ratio effect sizes and covariates for meta-analysis.
DOI: 10.5061/dryad.g08gb/1
title: Data for a Convenience Sample of Women Utilizing EMS for Obstetric Emergencies in India

description: This data is from a convenience sample of women in their third-trimester who used EMS across five states in India over a six week period in 2014.
DOI: 10.5061/dryad.g5rq3/3
title: R script used to analyze experimental evolution study

description: This R script contains code used to analyze fertility at the beginning and end of the experimental evolution component of our study.
DOI: 10.5061/dryad.g5rq3/4
title: data_saotome_transect

description: This file contains data associated with the Sao Tome transect, including details regarding fertility of all the lines collected along this transect.
DOI: 10.5061/dryad.g5rq3/5
title: data_bioko_transect

description: Data table containing fertility for lines assayed along the transect on the island of Bioko.
DOI: 10.5061/dryad.g5rq3/6
title: data_exp_evolution

description: Table containing fertility data for the experimental populations used in the 'kill-the-hybrids' experimental evolution component of our study.
DOI: 10.5061/dryad.g5rq3/7
title: data_exp_evol_means_controls

description: Table containing fertility data for the control populations used to compare with the experimentally evolved populations.
DOI: 10.5061/dryad.gf1k0/1
title: Acne PSP harvesting survey patient version no identifiers 230315
DOI: 10.5061/dryad.gf1k0/2
title: Acne PSP harvesting survey professional version no identifiers 220315

description: The raw unedited submissions to the Acne PSP harvesting survey for the collection of treatment uncertainties are contained in the following Excel files:Acne PSP harvesting survey patient version no identifiers 230315Acne PSP harvesting survey professional version no identifiers 230315All potential personal identifiers have been removed (age range, gender, ethnicity, first part of postcode) but could be made available on request for anyone who wishes to use them in their analyses and has the necessary ethical and, if required, NHS governance approvals.  For each data set, null entries (i.e. those submissions which did not contain any entries in the columns to collect treatment uncertainties) have been removed.  The submissions are listed in the order they were received.  In the patient version, treatment uncertainties could be entered into any of columns D through to K.  In the professional version, treatment uncertainties could be entered into any of columns B, D, F, H and J.    At the close of the survey, submitted text was rephrased as required in order to separate out individual questions.  Many submissions were not written as questions; where one or more questions could reasonably be inferred from the submitted text, they were extracted and included in totals.    The total number of questions in the journal article refers to the number of questions in scope after rephrasing.  An unlimited number of keywords (MesH descriptors wherever possible) were added to each separate question to enable collation by theme and/or by intervention type.  Further information can be obtained from:Dr E Anne Eady,eaeady@gmail.comTel: 01943 608823 ORDr Alison Layton,alison.layton@hdft.nhs.ukTel: 01423 553364Fax: 01423 553401
DOI: 10.5061/dryad.kt5nq/2
title: Athaliana_Isothermal_Array_Probe_Sequence

description: All custom-designed probes featured on the A.thaliana Isothermal SNP array. The array was manufactured by Agilent Biotech in CGH 8*60K format. The mean Tm value of the probes is 55 degree Celsius. The nomenclature of the probes follows the "Allele source_Chromosome_Position" format. The two alternatives of the allele source are "C" stands for Col-0 allele, and "NC" stands for non-Col-0 allele. The position information of the probes follows TAIR 8 coordinate.