cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27172692
title: A Sparse Beta Regression Model for Network Analysis

description: For statistical analysis of network data, the β-model has emerged as a useful tool, thanks to its flexibility in incorporating nodewise heterogeneity and theoretical tractability. To generalize the β-model, this article proposes the Sparse β-Regression Model (S β RM) that unites two research themes developed recently in modeling homophily and sparsity. In particular, we employ differential heterogeneity that assigns weights only to important nodes and propose penalized likelihood with an l1 penalty for parameter estimation. While our estimation method is closely related to the LASSO method for logistic regression, we develop a new theory emphasizing the use of our model for dealing with a parameter regime that can handle sparse networks usually seen in practice. More interestingly, the resulting inference on the homophily parameter demands no debiasing normally employed in LASSO type estimation. We provide extensive simulation and data analysis to illustrate the use of the model. As a special case of our model, we extend the Erdős-Rényi model by including covariates and develop the associated statistical inference for sparse networks, which may be of independent interest. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.6084/m9.figshare.27172692.v1
title: A Sparse Beta Regression Model for Network Analysis

description: For statistical analysis of network data, the β-model has emerged as a useful tool, thanks to its flexibility in incorporating nodewise heterogeneity and theoretical tractability. To generalize the β-model, this article proposes the Sparse β-Regression Model (S β RM) that unites two research themes developed recently in modeling homophily and sparsity. In particular, we employ differential heterogeneity that assigns weights only to important nodes and propose penalized likelihood with an l1 penalty for parameter estimation. While our estimation method is closely related to the LASSO method for logistic regression, we develop a new theory emphasizing the use of our model for dealing with a parameter regime that can handle sparse networks usually seen in practice. More interestingly, the resulting inference on the homophily parameter demands no debiasing normally employed in LASSO type estimation. We provide extensive simulation and data analysis to illustrate the use of the model. As a special case of our model, we extend the Erdős-Rényi model by including covariates and develop the associated statistical inference for sparse networks, which may be of independent interest. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.15468/dl.5f54bk
title: Occurrence Download

description: A dataset containing 978 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((118.029 6.250135, 117.95832 6.244564, 117.889385 6.227988, 117.823896 6.200817, 117.763469 6.163722, 117.709592 6.117617, 117.663594 6.063639, 117.626606 6.003121, 117.599537 5.937554, 117.583051 5.868554, 117.577548 5.79782, 117.583162 5.727095, 117.599749 5.65812, 117.626897 5.592592, 117.663936 5.532123, 117.709952 5.4782, 117.76381 5.432149, 117.824187 5.395103, 117.889597 5.367971, 117.958431 5.35142, 118.029 5.345858, 118.099569 5.35142, 118.168403 5.367971, 118.233813 5.395103, 118.29419 5.432149, 118.348048 5.4782, 118.394064 5.532123, 118.431103 5.592592, 118.458251 5.65812, 118.474838 5.727095, 118.480452 5.79782, 118.474949 5.868554, 118.458463 5.937554, 118.431394 6.003121, 118.394406 6.063639, 118.348408 6.117617, 118.294531 6.163722, 118.234104 6.200817, 118.168615 6.227988, 118.09968 6.244564, 118.029 6.250135))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 978 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005726-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eg5jvg
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.89097 24.812449, 88.81361 24.806872, 88.738175 24.790279, 88.666541 24.763084, 88.600486 24.725963, 88.541645 24.679837, 88.491471 24.625852, 88.451194 24.565346, 88.421798 24.499816, 88.403992 24.430884, 88.398196 24.360249, 88.404532 24.289653, 88.422826 24.220832, 88.452609 24.155477, 88.493133 24.095191, 88.54339299999999 24.041449, 88.602149 23.995566, 88.667956 23.958664, 88.739203 23.931643, 88.81415 23.915163, 88.89097 23.909624, 88.96778999999999 23.915163, 89.042737 23.931643, 89.113984 23.958664, 89.17979099999999 23.995566, 89.238547 24.041449, 89.28880700000001 24.095191, 89.329331 24.155477, 89.35911400000001 24.220832, 89.377408 24.289653, 89.38374399999999 24.360249, 89.377948 24.430884, 89.360142 24.499816, 89.330746 24.565346, 89.290469 24.625852, 89.240295 24.679837, 89.181454 24.725963, 89.115399 24.763084, 89.04376499999999 24.790279, 88.96832999999999 24.806872, 88.89097 24.812449))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005727-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmrggb
title: Occurrence Download

description: A dataset containing 499 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((117.869 6.270134, 117.798318 6.264563, 117.72938 6.247988, 117.663889 6.220817, 117.603459 6.183721, 117.54958 6.137616, 117.503581 6.083639, 117.466592 6.023121, 117.439522 5.957553, 117.423035 5.888553, 117.417532 5.817819, 117.423146 5.747095, 117.439734 5.678119, 117.466883 5.612591, 117.503924 5.552122, 117.549941 5.4982, 117.603802 5.452149, 117.66418 5.415103, 117.729592 5.387971, 117.798429 5.371421, 117.869 5.365858, 117.939571 5.371421, 118.008408 5.387971, 118.07382 5.415103, 118.134198 5.452149, 118.188059 5.4982, 118.234076 5.552122, 118.271117 5.612591, 118.298266 5.678119, 118.314854 5.747095, 118.320468 5.817819, 118.314965 5.888553, 118.298478 5.957553, 118.271408 6.023121, 118.234419 6.083639, 118.18842 6.137616, 118.134541 6.183721, 118.074111 6.220817, 118.00862 6.247988, 117.939682 6.264563, 117.869 6.270134))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 499 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005729-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14587604
title: BITCOIN Historical Datasets 2018-2026 Binance API
DOI: 10.15468/dl.mqqpet
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.89097 24.812449, 88.81361 24.806872, 88.738175 24.790279, 88.666541 24.763084, 88.600486 24.725963, 88.541645 24.679837, 88.491471 24.625852, 88.451194 24.565346, 88.421798 24.499816, 88.403992 24.430884, 88.398196 24.360249, 88.404532 24.289653, 88.422826 24.220832, 88.452609 24.155477, 88.493133 24.095191, 88.54339299999999 24.041449, 88.602149 23.995566, 88.667956 23.958664, 88.739203 23.931643, 88.81415 23.915163, 88.89097 23.909624, 88.96778999999999 23.915163, 89.042737 23.931643, 89.113984 23.958664, 89.17979099999999 23.995566, 89.238547 24.041449, 89.28880700000001 24.095191, 89.329331 24.155477, 89.35911400000001 24.220832, 89.377408 24.289653, 89.38374399999999 24.360249, 89.377948 24.430884, 89.360142 24.499816, 89.330746 24.565346, 89.290469 24.625852, 89.240295 24.679837, 89.181454 24.725963, 89.115399 24.763084, 89.04376499999999 24.790279, 88.96832999999999 24.806872, 88.89097 24.812449))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005730-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9tw4q5
title: Occurrence Download

description: A dataset containing 181 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Artibeus fraterculus"
 ]
}

 The dataset includes 181 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005731-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkwvhc
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinemys rufipes"
 ]
}

 The dataset includes 66 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005732-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6r6n4
title: Occurrence Download

description: A dataset containing 6713 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Masticophis"
 ]
}

 The dataset includes 6713 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005734-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ap93kv
title: Occurrence Download

description: A dataset containing 781935 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aquila chrysaetos",
 "Year 1970-2026"
 ]
}

 The dataset includes 781935 records from 528 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005690-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qznvk7
title: Occurrence Download

description: A dataset containing 78252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euchloe bazae Fabiano, 1993, Elphinstonia charlonia (Donzel, 1842), Cornifrons ulceratalis Lederer, 1858, Euchloe crameri Butler, 1869, Xylocopa californica californica, Anaphes trijohanni Jesu, 2002, Chrysolampus rufitarsis (Forster, 1859), Homoporus nubilipennis Garrido & Nieves Aldrey, 1996, Chrysomalla striata Askew, 2001, Meraporus graminicola Walker, 1834, Chrysomalla roseri Forster, 1859, Entedon parvicalcar Thomson, 1878, Tylopsis lilifolia (Fabricius, 1793), Puccinia eryngii DC., Orobanche amethystea Thuill., Bombus pascuorum freygessneri Vogt, 1909, Zygaena sarpedon Hübner, 1790, Brachycoleus triangularis (Goeze, 1778), Graphosoma semipunctatum (Fabricius, 1775), Stenopterus ater (Linnaeus, 1767), Chlorophorus varius (Müller, 1766), Icteranthidium grohmanni (Spinola, 1838), Chlorophorus trifasciatus (Fabricius, 1781), Depressaria campestrella Chrétien, 1896, Aethes flagellana (Duponchel, 1836), Agonopterix cnicella Treitschke, 1832, Eridontomerus algiricus Erdos, 1964, Podagrionella lichtensteini (Picard, 1933), Norbanus meridionalis (Masi, 1922), Necremnus artynes (Walker, 1839), Elasmus platyedrae Ferrière, 1935, Chartocerus conjugalis (Mercet, 1916), Dinarmus italicus (Masi, 1922), Psilochalcis rufitarsis (Illiger, 1807), Euderus albitarsis (Zetterstedt, 1838), Podagrion splendens Spinola, 1811, Proconura nigripes (Fonscolombe, 1832), Brachymeria femorata (Panzer, 1801), Pentacladia elegans Westwood, 1835, Brachymeria tibialis (Walker, 1834), Aethes margarotana (Duponchel, 1836), Polistes bischoffi Weyrauch, 1937, Namibiana rostrata (Bocage, 1886), Bembix oculata Panzer, 1801, Icteranthidium laterale (Latreille, 1809), Mesopolobus tibialis (Westwood, 1833), Phomopsis eryngiicola (Brunaud) Traverso, Plebejus maracandicus caspicus, Pontia callidice (Hübner, 1800), Lithostege griseata (Denis & Schiffermüller), 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 78252 records from 1498 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009587-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30690965
title: Comparative analysis of human and mouse ovaries across age, DOI: 10.1126/science.adx0659, Seurat object of subsetted human oocytes from this study and from Wu et al. 2024 (https://doi.org/10.1038/s43587-024-00607-1)

description: The mouse is a tractable model for human ovarian biology, however its utility is limited by incomplete understanding of how transcription and signaling differ interspecifically and with age. We compared ovaries between species using three-dimensional imaging, single-cell transcriptomics, and functional studies. In mice, we mapped declining follicle numbers and oocyte competence during aging; in human ovaries, we identified cortical follicle pockets and decreases in density. Oocytes had species-specific gene expression patterns during growth that converged toward maturity. Age-related transcriptional changes were greater in oocytes than granulosa cells across species, although mature oocytes change more in humans. We identified ovarian sympathetic nerves and glia; axon density increased in aged ovaries and, when ablated in mice, perturbed folliculogenesis. This comparative atlas defines shared and species-specific hallmarks of ovarian biology.
DOI: 10.6084/m9.figshare.30690965.v1
title: Comparative analysis of human and mouse ovaries across age, DOI: 10.1126/science.adx0659, Seurat object of subsetted human oocytes from this study and from Wu et al. 2024 (https://doi.org/10.1038/s43587-024-00607-1)

description: The mouse is a tractable model for human ovarian biology, however its utility is limited by incomplete understanding of how transcription and signaling differ interspecifically and with age. We compared ovaries between species using three-dimensional imaging, single-cell transcriptomics, and functional studies. In mice, we mapped declining follicle numbers and oocyte competence during aging; in human ovaries, we identified cortical follicle pockets and decreases in density. Oocytes had species-specific gene expression patterns during growth that converged toward maturity. Age-related transcriptional changes were greater in oocytes than granulosa cells across species, although mature oocytes change more in humans. We identified ovarian sympathetic nerves and glia; axon density increased in aged ovaries and, when ablated in mice, perturbed folliculogenesis. This comparative atlas defines shared and species-specific hallmarks of ovarian biology.
DOI: 10.15468/dl.3artdj
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Rhododendron keysii"
 ]
}

 The dataset includes 15 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005063-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7dudkh
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Four new species of Mileewini leafhoppers (Hemiptera: Cicadellidae: Mileewinae) from China, with a checklist to Chinese species"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005064-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3urrsk
title: Occurrence Download

description: A dataset containing 337109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Vitis"
 ]
}

 The dataset includes 337109 records from 1735 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005031-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15558588
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250531c Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250531c Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15558589
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250531c Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250531c Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5517/ccdc.csd.cc2n8mzk
title: CCDC 2451169: Experimental Crystal Structure Determination

description: Related Article: F.I. Guseinov, T. Hökelek, K.A. Afanaseva, E.V. Shuvalova, L.M. Glukhov, A.I. Samigullina, A.N. Belay|2025|Acta Crystallogr.,Sect.E:Cryst.Commun.|81|538|doi:10.1107/S2056989025004359
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.zxbsvh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Winteria telescopa Brauer, 1901",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((7.9186 1.8496,7.918 1.8981,7.6701 2.1458,7.2444 2.1771,6.9224 1.8988,6.9096 1.8496,7.9186 1.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009899-250525065834625/datasets/export for details.
DOI: 10.15468/dl.c45tk2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lonicera etrusca",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049432-250811113504898/datasets/export for details.
DOI: 10.15468/dl.njxk7u
title: Occurrence Download

description: A dataset containing 4368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vachellia farnesiana",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 4368 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009339-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/0pyf06
title: PDB: 1YJD, CD 28 in complex with 5.11A1 antibody (310K, 37°C, 200 ns)

description: Molecular Dynamics Simulations (200 nanoseconds) of human CD28 in complex with the Fab fragment of 5.11A1 antibody at 310K (37°C). Includes PDB files obtained after  0, 50, 100, 150, 200 nanoseconds.
DOI: 10.15468/dl.vu57t8
title: Occurrence Download

description: A dataset containing 151409989 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DecimalLatitude is greater than or equal to 0",
 "DecimalLatitude is less than or equal to 60",
 "DecimalLongitude is greater than or equal to 60",
 "DecimalLongitude is less than or equal to 150",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 151409989 records from 11838 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009289-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkdqnj
title: Occurrence Download

description: A dataset containing 2941 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bruchus rufimanus Boheman, 1833"
 ]
}

 The dataset includes 2941 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013764-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.