cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p46hk/1
title: Data Files

description: This archive of files contains all the data used in the analyses in the paper, including species-x-HWI table, species-x-island occurrences, subspecies-x-island occurrences, distances between islands, and island codes.  The subspecies-x-island occurrences file differs from the species-x-island file in that in the former, subspecies are treated the same as other species (they have their own line in the incidence matrix), while in the latter, all subspecies are aggregated into their parent species.
DOI: 10.5061/dryad.p46hk/2
title: AnalysisCode_ECOG02303

description: R code, as well as some dependent files, that are were used to execute the analysis presented in the paper.
DOI: 10.5061/dryad.qb87r/2
title: Taxidea_taxus_MHC_binaryGenotypes_Rico et al. 2016

description: MHC DRB-exon 2 binary-encoded genotypes of 236 samples from eight regions of the American badger. See publication for details of the sampled regions.
DOI: 10.5061/dryad.r64b3/1
title: Melanophloea data packet

description: This is a zipped folder that contains the alignments used in molecular phylogenetic analyses for this study. Specifically: 1) the original alignment in NEXUS format, 2) the input file for maximum likelihood analyses, and 3) the input file for Bayesian inference.
DOI: 10.5061/dryad.rp65k/1
title: POCT urine analysers Dryad 20JUL2016

description: raw data
DOI: 10.5061/dryad.rp65k/2
title: Userfriendliness POCT urine analysers Dryad 20JUL2016

description: raw data
DOI: 10.5061/dryad.t9j0j/1
title: Experimental synthetic procedures and supporting data.

description: All synthetic procedures, listing of data parameters and hard copies of spectroscopic data (NMR) are presented.
DOI: 10.5061/dryad.1cv0n/1
title: Phenotypic data

description: Phenotypic data at the Ester resistance to insecticide locus in the Cx pipiens mosquito from the Montpellier (south of France) over the 1986-2012 period. Site is the location of the sampled population, Km is the distance in kilometers between the population and the Mediteranean Sea, n the number of individuals phenotyped in each sampled population a given year and [i] the number of individuals presenting phenotype i.
DOI: 10.5061/dryad.1cv0n/2
title: Insecticide quantity data

description: The total amount of organophosphate insecticides applied (T) each year by the local agency for mosquito control in the treated area are presented. From 1986 to 1989, treatment applications (i.e., the size of the treated area and the amounts used) did not differ significantly from those in 1990. We therefore attributed the same amount of OPs to the years for which this information was missing (italics).
DOI: 10.5061/dryad.1q7q4/1
title: FIG1+FIG2

description: FIG1: Phylogeny of 29 strains of S. moniliformis, S. ratti, S. notomytis, S. felis and S. hongkongensis FIG2: Phylogeny of 23 S. moniliformis strains, both phylogenies are in nexus format
DOI: 10.5061/dryad.21104/1
title: Sapling survival data

description: Survival data collected in the experimental fields of FORBIO (http://www.treedivbelgium.ugent.be/). This includes data at the plot level for the sites Hechtel-Eksel, Zedelgem and Gedinne combined (Sheet: "data plot level") and data at tree level for the sites Hechtel-Eksel, Zedelgem and Gedinne seperately (Sheets: "data tree level Hechtel-Eksel", "data tree level Zedelgem" and "data tree level Gedinne").  Column headers are explained in the sheet "variables explained".
DOI: 10.5061/dryad.2dv6n/1
title: Accelerometry data (1hz) for arctic ground squirrels

description: 3-Axis accelerometry data (File 1 of 3; split) for arctic ground squirrels (collar mounted accelerometer) sampled at 1HZ. File includes individual identifier (uniqueID), sex, location ([Atigun; 68º27’ N, 149º21’ W; elevation 812 m] or Toolik [68º38’ N, 149º38’ W; elevation 719 m]), and calculated ODBA (overall dynamic body acceleration) for each second.
DOI: 10.5061/dryad.2dv6n/2
title: Accelerometry data (1hz) for arctic ground squirrels file 2

description: 3-Axis accelerometry data (File 2 of 3; split) for arctic ground squirrels (collar mounted accelerometer) sampled at 1HZ. File includes individual identifier (uniqueID), sex, location ([Atigun; 68º27’ N, 149º21’ W; elevation 812 m] or Toolik [68º38’ N, 149º38’ W; elevation 719 m]), and calculated ODBA (overall dynamic body acceleration) for each second.
DOI: 10.5061/dryad.2dv6n/3
title: Accelerometry data (1hz) for arctic ground squirrels file 3

description: 3-Axis accelerometry data (File 3 of 3; split) for arctic ground squirrels (collar mounted accelerometer) sampled at 1HZ. File includes individual identifier (uniqueID), sex, location ([Atigun; 68º27’ N, 149º21’ W; elevation 812 m] or Toolik [68º38’ N, 149º38’ W; elevation 719 m]), and calculated ODBA (overall dynamic body acceleration) for each second.
DOI: 10.5061/dryad.2g8j2/1
title: Alignments and trees for Sumakuru study (Salticidae)

description: Alignments for 28S, 16SND1, CO1, wingless, and maximum likelihood trees from analysis of salticid spider phylogeny, showing placement of Sumakuru within the lyssomanines.
DOI: 10.5061/dryad.2kd28/29
title: Table_S17

description: Relationship between the median and mean across all localities for each species for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12). SR = Spearman rank corelation; OLS = ordinary least-squares regression.  Shapiro-Wilk test results are for ln-transformed variables, except for the medians and means of MAT, TMAX and TMIN for the two 2014 trees.
DOI: 10.5061/dryad.3477v/1
title: Siskin-RSPB-2016-1184

description: Blood and tissues telomeres data.
DOI: 10.5061/dryad.3h2b7/1
title: Silene_samples_Heredity-Campos2016

description: Table with the ids used in the alignments for all the samples and for each gene. We also include the species name, sex and location for each sample.
DOI: 10.5061/dryad.3h2b7/2
title: cs3597_Lat-Dio_Campos2016

description: Alignment of gene cs3597 in nexus format used in the DnaSP analyses.
DOI: 10.5061/dryad.3h2b7/3
title: cs3597_Lat-Dio_Campos2016

description: Alignment of gene cs3597 in fasta format.
DOI: 10.5061/dryad.3h2b7/4
title: E559_Lat-Dio-Mar-Dic_Campos2016

description: Alignment of gene E559 in nexus format used in the DnaSP analyses.
DOI: 10.5061/dryad.3h2b7/5
title: E559_Lat-Dio-Mar-Dic_Campos2016

description: Alignment of gene E559 in fasta format.
DOI: 10.5061/dryad.3h2b7/6
title: cs935_Lat-Dio_Campos2016

description: Alignment of gene cs935 in nexus format used in the DnaSP analyses.
DOI: 10.5061/dryad.563n9/1
title: microsatellite_data_dryad
DOI: 10.5061/dryad.60ff8/1
title: README

description: ReadmMe containing details of associated data files
DOI: 10.5061/dryad.66qh9/1
title: Megalaria_data_packet

description: Original data file in nexus format, data file for bayesian inference, data file for maximum likelihood analyses, and data file for ITS distance calculations
DOI: 10.5061/dryad.6hb7j/1
title: Supplementary Data 1

description: Characters used in phylogenetic analysis.
DOI: 10.5061/dryad.6hb7j/2
title: Supplementary Data 2

description: Nexus file containing the character matrix and age range calibrations.
DOI: 10.5061/dryad.6hb7j/3
title: Supplementary Data 3

description: Comparison of marginal log-likelihood scores and Bayes Factors for phylogenetic model selection.
DOI: 10.5061/dryad.6hb7j/4
title: Supplementary Data 4

description: Tree file containing the maximum clade credibility tree from the best fit model.
DOI: 10.5061/dryad.6j018/10
title: In Vitro Fluorescent Evaluation - HepG2 Flow Data

description: This file contains the raw flow cytometry data and overlayed images (“analyze” tab) which were arranged for Fig 4.
DOI: 10.5061/dryad.6j018/11
title: In Vitro Fluorescent Evaluation - MCF7 Flow Data

description: This file contains the raw flow cytometry data and overlayed images (“analyze” tab) which were arranged for Fig 4.
DOI: 10.5061/dryad.6j018/5
title: Immunofluorescence Sample Image BxPC-3 CEA 680

description: This file is a raw jpeg of an immunofluorescent image used in Fig 3, panel A.
DOI: 10.5061/dryad.6j018/6
title: Immunofluorescence Sample Image BxPC3 IgG 680 PTX

description: This file is a raw jpeg of an immunofluorescent image used in Fig 3, panel A.
DOI: 10.5061/dryad.6j018/7
title: Immunofluorescence Sample Image BxPC3 IgG 680

description: This file is a raw jpeg of an immunofluorescent image used in Fig 3, panel A.
DOI: 10.5061/dryad.6j018/8
title: In Vitro Fluorescent Evaluation - BxPC3 Flow Data

description: This file contains the raw flow cytometry data and overlayed images (“analyze” tab) which were arranged for Fig 4.
DOI: 10.5061/dryad.6j018/9
title: In Vitro Fluorescent Evaluation - HeLa Flow Data

description: This file contains the raw flow cytometry data and overlayed images (“analyze” tab) which were arranged for Fig 4.
DOI: 10.5061/dryad.7c63h/1
title: Herbivory Dependent Bet-Hedging Model

description: Herbivory Dependent Bet-Hedging Model
DOI: 10.5061/dryad.7c63h/2
title: Herbivory Independent Bet-Hedging Model

description: Herbivory Independent Bet-Hedging Model
DOI: 10.5061/dryad.7c63h/3
title: Achene Predictor

description: This file contains data for a sub-model that is used in Density independent and dependent bet-hedging model. These data must be read in (loaded) prior to running bet hedging models.
DOI: 10.5061/dryad.7c63h/4
title: Extreme Herbivory Frequency

description: This file holds code that determines extreme herbivory frequency. This file must be loaded prior to running Herbivory dependent model
DOI: 10.5061/dryad.7t457/3
title: Ex.1.muts

description: This data file shows how many mutations each student found in Example 1.
DOI: 10.5061/dryad.7t457/4
title: Ex.2.32

description: This is the data file for Exercise 2.
DOI: 10.5061/dryad.7t457/5
title: Ex.3

description: This is the data for Exercise 3.
DOI: 10.5061/dryad.7t457/6
title: Data.Fig.4

description: This is the data needed for Figure 4.
DOI: 10.5061/dryad.7t457/7
title: Affect.Fall

description: This is the data file for student affect from the fall semester
DOI: 10.5061/dryad.7t457/8
title: Affect.Spring

description: This is the data file for the student affect from the spring term.
DOI: 10.5061/dryad.7t457/9
title: Data.For.Probit

description: This is the raw data needed for doing a Probit analysis.
DOI: 10.5061/dryad.f96cr/2
title: Experimental data on psychoacoustic and cognitive predictors of cocktail-party listening

description: Experimental data from 50 human normal-hearing listeners. Sentence identification performance in a simulated cocktail-party listening task with two spatially separated interfering speakers was measured together with several potential psychoacoustic and cognitive predictors.
DOI: 10.5061/dryad.fs618/1
title: FREDERICH_figures_tables_ESM

description: Pdf file including figure S1, figure S2, table S1, table S2 and table S3.
DOI: 10.5061/dryad.fs618/2
title: Carangoids_Specimen_list

description: List of all studied specimens with accession numbers and related online databases.
DOI: 10.5061/dryad.g81c8/11
title: Yellowstone River Bullfrogs: Isolation by distance

description: This folder contains the R code and data input files used to examine the relationship between genetic distance and geographic river distance in invasive American Bullfrog (Lithobates catesbeianus) populations along the Yellowstone River.  Description of the individual files can be found below.
DOI: 10.5061/dryad.gn4hh/1
title: Arabidopsis halleri functional annotation

description: Functional annotation for Arabidopsis halleri ssp. gemmifera Tada mine. The annotation was performed with AUGUSTUS v3.0.3 using RNA-seq data from leaves and roots.
DOI: 10.5061/dryad.gn4hh/4
title: RepeatMasker output for the Arabidopsis halleri assembly
DOI: 10.5061/dryad.gn4hh/5
title: Transposable elements identified by RepeatMasker in the Arabidopsis halleri assembly

description: Transposable elements identified by RepeatMasker in the Arabidopsis halleri assembly. The output was converted to GFF format.
DOI: 10.5061/dryad.gn4hh/6
title: Arabidopsis halleri assembly with TE masking

description: Arabidopsis halleri assembly with transposable elements and simple repeats masked by RepeatMasker.
DOI: 10.5061/dryad.gn4hh/7
title: Arabidopsis halleri Transcripts

description: Coding sequences of all reported transcripts in Arabidopsis halleri
DOI: 10.5061/dryad.hn082/1
title: Vecor_fields
DOI: 10.5061/dryad.m540m/1
title: RA_EHA_DATA

description: Social behavior of RA zebrafish.
DOI: 10.5061/dryad.mv5c0/1
title: Natural tapeworm infection prevalence

description: Field data from multiple populations of threespine stickleback on Vancouver Island, Canada. Data include sampling site, Schistocephalus solidus infection prevalence, std err of infection prevalence, and sample size (N).
DOI: 10.5061/dryad.mv5c0/2
title: Laboratory infection data

description: This file describes results from exposing threespine stickleback to controlled doses of Schistocephalus solidus in a lab setting. We describe whether fish are from lake vs marine sites, continent of collection, population name, fish family within population, tapeworm origin, tapeworm family, fish sex, fish mass, infection intensity, infection status, parasite mass, parasite index, and infection intensities of wild-caught parents of experimental families.
DOI: 10.5061/dryad.n7bf0/1
title: Data for field experiment

description: This is the field data for the manuscript “Condition-dependent trade-offs between sexual traits, body condition and immunity: the effect of novel habitats”.Data was collected by MIC and CC. All methods are described in the associated manuscript. Column headings are described in the excel spreadsheet.
DOI: 10.5061/dryad.n7bf0/2
title: Data from mesocosm experiment

description: This is the mesocosm data for the manuscript “Condition-dependent trade-offs between sexual traits, body condition and immunity: the effect of novel habitats”Data was collected by MIC and CC. All methods are described in the associated manuscript. Column headings are described in the excel spreadsheet.
DOI: 10.5061/dryad.p0j5k/1
title: Female mating frequency, P2 and Egg-adult Viability data

description: Sheet 1: Female lifetime mating frequency, Sheet 2: Description of variables contained in Sheet 1. Sheet 3: Focal male P2 and egg-to adult viability data, Sheet 4: Description of variables contained in Sheet 3.
DOI: 10.5061/dryad.p6s40/1
title: Temporal dynamics of nutrient uptake-dataset-Zhang, Liu and Li-FE-2016
DOI: 10.5061/dryad.r7825/1
title: Water temperature from datalogger 2007 to 2015 in Lac Arlet

description: Water temperature at Lac Arlet (Longitude: 0°36'54.12"W, Latitude: 42°50'24.20"N) was monitored in the field with the use of a data logger (HOBO Water Temperature Pro v2 Data Logger - U22-001). The logger was positioned approximately half a meter below the water surface. The logger was configured to take a reading of the water temperature every half an hour throughout the year and was manually uploaded once a year.
DOI: 10.5061/dryad.048kf/1
title: Michaelides_etal_MolEco_MicrosatelliteData

description: Sheet1_Genotypes of 1546 samples from 66 populations. Sheet2_Genotypes of 321 females. Sheet3_Genotypes of 160 offspring. (All individuals were genotyped at 13 microsatellite loci).
DOI: 10.5061/dryad.1cn19/1
title: Phenological obserations and wood anatomy measurements

description: Phenolological and anatomical data collected in the field during 2012 and 2013 in NW Iberian Peninsula (Wet, Intermediate and Dry sites). This file contains 5 spreadsheets including for each sampling date: (i) Leaf and cambial phenology binary data; (ii) mean number of cambial cells; (iii) width of the enlarging and maturing xylem zones, and (iv) soluble sugar and starch concentrations (expressed as percentage of dry matter). In addition, (v) individual tree characteristics are summarized in the last spreadsheet. (i) Spp is species, doy is day of year, EW onset is onset of earlywood enlargement, LW onset is onset of latewood enlargement, Max cambial cell is maximum number of cambial cells, Max enlargement is maximum width of enlarging xylem, Cessation1 is latewood growth cessation without considering autumn regrowth, Cessation2 is latewood growth cessation considering autumn regrowth, Regrowth is regrowth period in autumn; (ii) No cambial cells is the mean number of cambial cells; (iii) EnlargingRAW is width of enlarging xylem, MaturingRAW is width of both maturing and mature xylem; (v) EWD onset is the doy for earlywood growth onset, LWD cessation is the doy for latewood growth cessation, Dormant cambial cells is the radial number of dormant cambial cells. Study species are Quercus robur (Qrob) and Quercus pyrenaica (Qpyr).
DOI: 10.5061/dryad.2dv6n/10
title: Arctic ground squirrel body mass data 2014-2015

description: Body Mass data for arctic ground squirrels captured at site adjacent to Atigun River (68º27’ N, 149º21’ W; elevation 812 m) or adjacent to Toolik Lake (68º38’ N, 149º38’ W; elevation 719 m).
DOI: 10.5061/dryad.2dv6n/4
title: Light logger data for arctic ground squirrel - Migrate 2014

description: 2014 Light logger data for arctic ground squirrels (collar mounted accelerometer) from Intigeo geolocators (Migrate Technology Inc). File includes individual identifier (uniqueID), sex, and location ([Atigun; 68º27’ N, 149º21’ W; elevation 812 m] or Toolik [68º38’ N, 149º38’ W; elevation 719 m]).
DOI: 10.5061/dryad.2dv6n/5
title: Light logger data for arctic ground squirrel - Migrate 2015

description: 2015 light logger data for arctic ground squirrels (collar mounted) from Intigeo geolocators (Migrate Technology Inc). File includes individual identifier (uniqueID), sex, and location ([Atigun; 68º27’ N, 149º21’ W; elevation 812 m] or Toolik [68º38’ N, 149º38’ W; elevation 719 m]).
DOI: 10.5061/dryad.2dv6n/6
title: Light logger data for arctic ground squirrel - Biotrack 2014

description: Light logger data for arctic ground squirrels (collar mounted) using m-series geolocator by Biotrack. File includes individual identifier (uniqueID), sex, and location ([Atigun; 68º27’ N, 149º21’ W; elevation 812 m] or Toolik [68º38’ N, 149º38’ W; elevation 719 m]).
DOI: 10.5061/dryad.2dv6n/7
title: Light logger data for arctic ground squirrel - Biotrack 2015

description: Light logger data for arctic ground squirrels (collar mounted) from m-series geolocator (Biotrack). File includes individual identifier (uniqueID), sex, and location ([Atigun; 68º27’ N, 149º21’ W; elevation 812 m] or Toolik [68º38’ N, 149º38’ W; elevation 719 m]).
DOI: 10.5061/dryad.2dv6n/8
title: Weather Data Atigun River - 2014

description: Weather data (April 1 - August 15, 2014) for site adjacent to Atigun River (68º27’ N, 149º21’ W; elevation 812 m). Hobo U30-NRC weather station (Onset Computer Corporation, Bourne, Massachusetts). Rain Gauge is a tipping bucket.
DOI: 10.5061/dryad.2dv6n/9
title: Weather Data Atigun River - 2015

description: Weather data (April 27 - June 10 2015) for site adjacent to Atigun River (68º27’ N, 149º21’ W; elevation 812 m). Hobo U30-NRC weather station (Onset Computer Corporation, Bourne, Massachusetts). Rain Gauge is a tipping bucket.
DOI: 10.5061/dryad.38m23/1
title: OA_Pred_Avoid_Data

description: Data is of three response variables (proportion of time out of water, path shape and path length) of snails in the presence or absence of cue from a sea star predator (Pisaster ochraceus) under different pH conditions.
DOI: 10.5061/dryad.3cp54/1
title: 20160827Fluorescein
DOI: 10.5061/dryad.3h2b7/10
title: E521_Lat-Dio_Campos2016

description: Alignment of gene E521 in nexus format used in the DnaSP analyses.
DOI: 10.5061/dryad.3h2b7/11
title: E521_Lat-Dio_Campos2016

description: Alignment of gene E521 in fasta format.
DOI: 10.5061/dryad.3h2b7/12
title: cs4991_Lat-Dio_Campos2016

description: Alignment of gene cs4991 in nexus format used in the DnaSP analyses.
DOI: 10.5061/dryad.3h2b7/13
title: cs4991_Lat-Dio_Campos2016

description: Alignment of gene cs4991 in fasta format.
DOI: 10.5061/dryad.3h2b7/7
title: cs935_Lat-Dio_Campos2016

description: Alignment of gene cs935 in fasta format.
DOI: 10.5061/dryad.3h2b7/8
title: E523_Lat-Dio-Mar-Dic_Campos2016

description: Alignment of gene E523 in nexus format used in the DnaSP analyses.
DOI: 10.5061/dryad.3h2b7/9
title: E523_Lat-Dio-Mar-Dic_Campos2016

description: Alignment of gene E523 in fasta format.
DOI: 10.5061/dryad.42517/1
title: Data for MEC-16-0039R1

description: The excel file contains 4 sheets with datasets from this paper.This file contains datasets analyzed in Hendrick et al. 2016 paper on trichome variation in Yellowstone Mimulus guttatus1. SdtrichQTL  - phenotypes and marker genotypes from an outbred F2 mapping population (AHQT x AHQNT), grown under short daylengths and cool temperature conditions 2. AHQF2_2015 - pehnotypes and genotypes from an inbred line F2 (AHQT x AHQNT) grown under long daylength conditions in greenhouse                                                                                                                                                                                                                                                3. AHQgradient_markerpopgen - STRUCTURE input file for AHQT (plots 1-6), AHQNT (plots 14-17), AND AHQ_Canyon (plots 7-13) populations, marker information is in Lekberg et al. 20124. AHQG15-trichadmixture - marker genotypes and phenotypes for wild  Tr14-recombinant  AHQNT AND AHQ_Canyon  individuals grown under common garden conditions
DOI: 10.5061/dryad.563n9/2
title: traditional_morphological_data
DOI: 10.5061/dryad.563n9/3
title: geometric_morphometric_data
DOI: 10.5061/dryad.5c8n1/1
title: qst_data

description: Excel file with three datasheets. Phenotype contains the data used to calculate Qst for each floral trait. Pedigree contain half-sib family information. Genotype contains microsatellite data used to calculate Fst.
DOI: 10.5061/dryad.60ff8/10
title: Data_S6

description: Cost of Arsenophonus nasoniae infection in multiple species: Data collected from 4 of 5 species after two generations of passage following Arsenophonus introduction. Used for Figure 7
DOI: 10.5061/dryad.60ff8/2
title: Data S7

description: Male killing efficiency of Arsenophonus strain CAN1 in host wasp Nasonia vitripennis
DOI: 10.5061/dryad.60ff8/3
title: Data_S1

description: infection prevalence and sex ratio through eight generations. Used to produce Figure_1, Figure_2 and Table_1
DOI: 10.5061/dryad.60ff8/4
title: Data_S2

description: Population viability through time. Used for Figure_3
DOI: 10.5061/dryad.60ff8/5
title: Data_S4

description: Multiple host species infection dynamics: Used in Figure 5
DOI: 10.5061/dryad.60ff8/6
title: Data_S5

description: Vertical transmission efficiency of Arsenophonus nasoniae in five species of parasitoid wasps. Data collected after two generations of passage following Arsenophonus introduction. Used for Figure 6
DOI: 10.5061/dryad.60ff8/7
title: Data_S3

description: Infection prevalence at generation 4 for populations of N.vitripennis kept at variable opportunities to super parasitise. Used for Figure_4.
DOI: 10.5061/dryad.6j018/12
title: In Vitro Fluorescent Evaluation - CEA Internalization Data

description: This file contains the compiled and processed data surrounding the quantitative estimation of CEA internalization (Fig 5, panel B).
DOI: 10.5061/dryad.6j018/13
title: In Vitro Cytotoxicity Evaluation - MTT Assay Compiled Data

description: This excel file contains all of the compiled MTT assay data, as well as graphs (Fig 6) and linear regression analysis for estimating IC50 (Table 2).
DOI: 10.5061/dryad.6j018/14
title: In Vitro Cytotoxic Evaluation - Flow Cytometry Cell Cycle Analysis

description: This file contains the raw flow cytometry cell cycle analysis data and analyzed images that were arranged for Fig 7. This file was originally a template that was included with the BD cell cycle analysis kit as described in the paper.