cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13026/a2mw-f949
title: MIMIC-IV Waveform Database

description: The MIMIC-IV Waveform Database is a large collection of physiological signals
and measurements from patients in intensive care units, including
electrocardiograms, photoplethysmograms, respiration, invasive and non-
invasive blood pressure, and more. These measurements and signals are obtained
directly from the bedside monitor, and provide a detailed view into the
physiology of critically ill patients.

Combining this database with the clinical information found in MIMIC-IV
provides a broad, cross-sectional example of the data available to caregivers
in a modern ICU. We hope that this database will provide a foundation for
future improvements to monitoring technology as well as data-driven diagnosis
and treatment.

  *[ICU]: Intensive care unit
DOI: 10.15129/3cf00c9b-e891-433e-afe3-732577aa74d2
title: Supplementary material for: "Evaluation of Wind Power Forecasts – An up-to-date view"

description: Code and data used to produce the examples in "Evaluation of Wind Power Forecasts – An up-to-date view" by Jakob W. Messner, Pierre Pinson, Jethro Browell, MathiasB Bjerregard, and Irene Schicker. A subset of data from GEFcom2014 is used (Task15_W_Zone1.csv), originally published here: Tao Hong, Pierre Pinson, Shu Fan, Hamidreza Zareipour, Alberto Troccoli, Rob J. Hyndman, "Probabilistic energy forecasting: Global Energy Forecasting Competition 2014 and beyond", International Journal of Forecasting,Volume 32, Issue 3,2016,Pages 896-913,ISSN 0169-2070,https://doi.org/10.1016/j.ijforecast.2016.02.001 This dataset is made available under the GNU General Public License v3.0
DOI: 10.25430/researchdata.cab.unipd.it.00001059
title: Clinical and biochemical data for the diagnosis of endogenous hypercortisolism: the “Cushingomic” approach

description: Background: The recommended first-line screening tests for Cushing’s syndrome (CS) are cortisol after dexamethasone suppression test (DS), 24h urinary free cortisol (UFC), and late night salivary cortisol (LNSC). We collected them and evaluated in combination with the clinical presentation of suspected CS. Methods: We analysed 1-mg DST (with dexamethasone levels), UFC and LNSC (with tandem-mass spectrometry) in patients without CS (263 suspected CS, 319 adrenal and 33 pituitary incidentalomas) and 40 confirmed CS. Non-parametric multivariate methods (principal component analysis, K-means clustering, random forest, and supervised learning algorithm) were used to compute an integrated analysis among screening tests (1-mg DST, UFC, LNSC), cortisol-related comorbidities and signs/symptoms of CS. Findings: The three tests were able to individuate CS, cortisol after DST and UFC were slightly superior to LNSC. The threshold of 1-mg DST should be adapted to the population considered, especially in adrenal incidentaloma with mild autonomous cortisol secretion, the results of UFC and LNSC were independent of the group or high-risk condition considered. Some cortisol-related comorbidities were more common in patients without CS (diabetes, hypertension, and obesity), their correlation with screening tests was poor: the direction of their vectors was not aligned. A neural network model that combined screening tests and clinical presentation was able to predict the CS diagnosis in the validation cohort with 99% sensitivity, 86% specificity, 99% precision and 86% accuracy. Interpretation: Screening tests for CS performed adequately. The presence of cortisol-related comorbidities and mild autonomous cortisol secretion in adrenal incidentalomas should be interpreted carefully.
DOI: 10.34740/kaggle/dsv/3603983
title: Maize_in_Field_Dataset
DOI: 10.5281/zenodo.1213125
title: A molecular dynamics study of adenylyl cyclase: the impact of ATP and G-protein binding

description: Adenylyl cyclases (ACs) catalyze the biosynthesis of cyclic adenosine monophosphate (cAMP) from adenosine triphosphate (ATP) and play an important role in many signal transduction pathways. The enzymatic activity of ACs is carefully controlled by a variety of molecules, including G-protein subunits that can both stimulate and inhibit cAMP production. Using homology models developed from existing structural data, we have carried out all-atom, microsecond-scale molecular dynamics simulations on the AC5 isoform of adenylyl cyclase and on its complexes with ATP and with the stimulatory G-protein subunit Gsα. The results show that both ATP and Gsα binding have significant effects on the structure and flexibility of adenylyl cyclase. New data on ATP bound to AC5 in the absence of Gsα notably help to explain how Gsα binding enhances enzyme activity and could aid product release. Simulations also suggest a possible coupling between ATP binding and interactions with the inhibitory G-protein subunit Gαi. All-atom molecular dynamics simulations were performed with the GROMACS 5 package. The simulations were carried out in an NTP ensemble at a temperature of 310 K and a pressure of 1 bar using a Bussi velocity-rescaling thermostat (t<sub>T</sub> = 1 ps) and a Parrinello-Rahman barostat (t<sub>P</sub> = 1 ps). We provide the atomistic trajectories of the following 6 systems after 400 ns of equilibration: AC5 AC5+ATP AC5+Gsα AC5+ATP+Gsα AC5+FOK AC5+ATP+FOK In each trajectory, the frames are saved each 20 ps.
description: It is agreed that the data remain the property of CNRS.
DOI: 10.5281/zenodo.5573621
title: Data for Cost Optimization of Shedding Mechanisms as a Product Family

description: This the data from the numerical examples presented in "Accelerating Cost Optimization of Existing Product Family Designs Using Sensitivity Analysis on Component Commonalities" article. It contains the data of the results for the cost optimization of a shedding mechanism as a product family from two types of optimization: (i) brute-force and (ii) guided optimization: proposed method which uses sensitivity analysis on component commonalities. Each datum (.mat file) contains design variables (length of the four-bar mechanisms and motor locations) of a specific commonality matrix.
DOI: 10.5281/zenodo.6602409
title: Melt pond from aerial photographs of the Healy–Oden Trans Arctic Expedition (HOTRAX)

description: The dataset contains mapped melt pond zones from aerial photographs which were obtained during helicopter photography flights as part of the Healy–Oden Trans Arctic Expedition (HOTRAX) between 5 August and 30 September 2005. The detection has been done using an original detection algorithm based on machine learning (U-Net). The areas in the images were divided into four classes: sea ice/snow, melt ponds, sub-merged ice and open water. The filenames contain IDs from the original dataset [Perovich et al 2008].
description: This work was supported by the Division of Physics at the U.S. National Science Foundation (NSF) through Grant PHY-2102906
DOI: 10.5285/9ef0ebf847564c2eabe62cac4899ec41
title: ESA Sea Surface Salinity Climate Change Initiative (Sea_Surface_Salinity_cci): Version 1.8 data collection

description: These data comprise v1.8 of the Sea Surface Salinity (SSS) Essential Climate Variable (ECV) dataset produced as part of the European Space Agency's (ESA) Climate Change Initiative (CCI) programme. The ESA CCI Sea Surface Salinity ECV data have been produced at a spatial resolution of 50 km and spatiallly resampled on a 25km EASE (Equal Area Scalable Earth) grid and a) with a time resolution of 1 week and 1 day of time sampling and b) a time resolution of 1 month and 15 days of time sampling.

This first version (v1.8) of the CCI+SSS products is a preliminary version issued for evaluation purposes by voluntary scientists and for framing future CCI+SSS products. This product has not been fully validated yet and may contain flaws. In case you discover some, the CCI Sea Surface Salinity project (Mngt_CCI-Salinity@argans.co.uk) are very keen to get your feedback. In case you would like to use them in a presentation or publication, please be aware of the following caveats:

CAVEATS

- The SSS random error in the weekly product is overestimated by a factor ~1.4.
- The Number of outliers is wrongly set to 'NaN' in the case where it is equal to zero.
- Products have not yet been not optimised for some issues encountered at high latitudes (i.e. remaining ice, RFI pollution, biases due to land-sea contamination and dielectric constant in cold waters).
- The criteria for flagging data close to land (including islands) are conservative and likely to be too restrictive in places.
- There is a systematic global underestimation (-0.08) of SSS starting at the beginning of the data set, and gradually disappearing at the end of 2010.
- There is a seasonal varying bias (~0.1, peaking in the middle of the year) in the Pacific North of 25°N".

Acknowledgements: The authors thank the CCI+ SSS validation team, in particular S. Guimbard (ODL) and A. Martin (NOC), for their feedback on the products, R. Catany (ARGANS) for managing the project and P. Cipollini and C. Donlon (ESA) for their sound advice.
DOI: 10.5683/sp2/zrgxq5
title: Data used in 'Size-Based Characterization of Freshwater Dissolved Organic Matter finds Similarities within a Water Body Type across Different Canadian Ecozones'

description: Field collection of freshwater surface and groundwater samples from five ecozones across Canada. Concentration and composition (via UV-absorbance and size-exclusion chromatography) of dissolved organic matter were analyzed across all sites and compared across hydrologic compartments to identify similarities in dissolved organic matter (DOM).
DOI: 10.6084/m9.figshare.10248158
title: Water maze tracking data

description: A Morris water maze experiment was performed using 3 days of training and 2 days of reversal with 6 trials per day. Mice (n = 5 per group) of the strains C57BL/6 and DBA/2 were compared. The last trial on days 3 and 5 was a probe trial with no platform present. The swim paths were captured using Noldus Ethovision software (version 3) and the raw coordinate data, as well as arena descriptions and metadata, have been consolidated into an archive in the JSON format using the software Rtrack (https://rupertoverall.net/Rtrack).<br>
DOI: 10.6084/m9.figshare.1052996
title: A P. aeruginosa serotype-defining single read from our first Oxford Nanopore run

description: Here is, I think, the first publically-available Oxford Nanopore read to be published. This came off our MinION instrument this morning (Wednesday 11th June). The DNA was derived from Pseudomonas aeruginosa strain 910 which originally came from hospital water. DNA was fragmented with Covaris G-Tube as per the Oxford Nanopore standard genomic library preparation protocol. The read maps to part of the P. aeruginosa O6-antigen determining region.
DOI: 10.6084/m9.figshare.12951974.v1
title: Structure determination of new fasamycin and formicamycin congeners

description: Structural elucidation of new fasamycins and formicamycins from de-repressed <i>S. formicae</i> mutants. See manuscript for more information including methodology.
DOI: 10.6084/m9.figshare.1362572
title: bioCADDIE white paper - Data Discovery Index

description: This article describes the plans for the BD2K project bioCADDIE (biomedical and healthCAre Data Discovery Index Ecosystem).
It includes several contributions from the data science community.
DOI: 10.17045/sthlmuni.25610217
title: Open data: Examining the lateralization of electrophysiological correlates of auditory awareness

description: Supplementary material for the associated publication.<b>ABSTRACT</b>The neurological basis for perceptual awareness remains unclear, and theories disagree as to whether sensory cortices per se generate awareness. Critically, neural activity in the sensory cortices is only a neural correlate of consciousness (NCC) if it closely matches the contents of perceptual awareness. Research in vision and touch suggest that contralateral activity in sensory cortices is an NCC. Similarly, research in hearing with two sound sources (left and right) presented over headphones also suggests that a candidate NCC called the auditory awareness negativity (AAN) matches perceived location of sound. The current study used 13 different sound sources presented over loudspeakers for natural localization cues and measured event-related potentials (ERPs) to a threshold stimulus in a sound localization task. Preregistered Bayesian mixed models provided moderate evidence against an overall AAN and very strong evidence against its lateralization. Because of issues regarding data quantity and quality, exploratory analyses with aggregated data from multiple loudspeakers were conducted. Results provided moderate evidence for an overall AAN and strong evidence against its lateralization. Nonetheless, the interpretations of these results remain inconclusive. Therefore, future research should reduce the number of conditions and/or test over several sessions to procure a sufficient amount of data. Taken at face value, the results may suggest issues with AAN as an NCC of auditory awareness, as it does not laterally map onto experiences in a free-field auditory environment, in contrast to the NCCs of vision and touch.<b>ETHICS STATEMENT</b>Ethical review and approval were not required for studying human subjects in accordance with local law and institutional requirements, as we did not collect personal and biological data that can be traced back to the subject. The experiment adhered to the declaration of Helsinki. Subjects were required to provide their written informed consent to participate in this study and that their raw data will be shared in anonymized form.The uploaded data are considered anonymized because there is no key that links test subjects to their data.<b>DATE & LOCATION OF DATA COLLECTION</b>Subjects (N = 56; Final sample: N = 37) were tested between August 2022 and October 2022 at the Department of Psychology, Campus Albano, Stockholm, Sweden.<b>DATA & FILE OVERVIEW</b>See readme file for details.
DOI: 10.5281/zenodo.3743898
title: Data for: Wind drives temporal variation in pollinator visitation in a fragmented tropical forest

description: Data for "Wind drives temporal variation in pollinator visitation in a fragmented tropical forest." Files include: 1. Data on orchid bee abundance and species identification. 2. Data for collection sessions, including forest cover at each site, as well as wind data for the specific time period of the collection, and overall abundance counts, etc. 3. R scripts to recreate statistical presented in the paper, using the two datasets described above.
DOI: 10.5281/zenodo.8002281
title: A Multimodal Dataset for Mixed Emotion Recognition

description: ABSTRACT: Mixed emotions have attracted increasing interest recently, but existing datasets rarely focus on mixed emotion recognition from multimodal signals, hinder the affective computing of mixed emotions. On this basis, we present a multimodal dataset with four kinds of signals recorded during watching mixed and non-mixed emotion videos. To ensure effective emotion induction, we first implemented a rule-based video filtering step to select the videos that could elicit stronger positive, negative, and mixed emotions. Then, an experiment with 80 participants was conducted, in which the data of EEG, GSR, PPG and frontal face videos were recorded while they watching the selected video clips. We also recorded the subjective emotional rating on PANAS, VAD, and amusement-disgust dimensions. In total, the dataset consists of multimodal signal data and self-assessment data from 73 participants (7 of the 80 participants’ data were discarded due to the deficiency in physiological signal). We also present technical validations for emotion induction and mixed emotion classification from physiological signals and face videos.
DOI: 10.5281/zenodo.8037714
title: Dataset accompanying the submission titled "Adaptive covariance hybridization for the assimilation of SST observations within a coupled Earth system reanalysis"

description: The dataset contains the data accompanying our submission entitled "Adaptive covariance hybridization for the assimilation of SST observations within a coupled Earth system reanalysis". It contains: The yearly outputs of the free run The observations The yearly outputs of the runs of the standard hybrid The yearly outputs of the runs of the adaptive hybrid The grid of the model The maps of the hybridization coefficients The python and matlab scripts used to plot the figures of the article
DOI: 10.5517/ccx6d9s
title: CCDC 840295: Experimental Crystal Structure Determination

description: Related Article: A.Lennartson, M.Hakansson|2011|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6080/k09g5jrz
title: Multiple single unit recordings from different rat hippocampal and entorhinal regions
                        while the animals were performing multiple behavioral tasks.
title: CRCNS.org hc-3

description: The data set contains recordings made from multiple hippocampal areas in Long-Evans rats,
                including: Cornu Ammonis: CA1 and CA3; dentate gyrus (DG), and entorhinal cortex: EC2, EC3, EC5.
                The data was obtained during 442 recording sessions and includes responses of 7,737 neurons in eleven
                animals while they performed one of fourteen behaviors.  Total time for all experiments is 204.5 hours.
DOI: 10.6084/m9.figshare.24797310.v2
title: Genome annotation information of Episyrphus balteatus

description: This is an annotation of the Episyrphus balteatus genome. In this project, the proteins of Episyrphus balteatus were annotated, and the location of each gene on the chromosome was also analyzed, which is a complement to the genome.
DOI: 10.15156/bio/100002
title: Data from: Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing
DOI: 10.15156/bio/587446
title: Data from: Local-scale spatial distribution and community composition of orchid mycorrhizal fungi in relation to grazing and environmental effects in semi-natural grasslands
DOI: 10.1594/pangaea.836312
title: [RAW VALIDATED DATA] Navigation and meteorological data during the Tara Oceans expedition 2009-2013

description: The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of environmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data publication provides permanent links to original and updated versions of validated data files containing navigation and meteorological data collected during the entire Tara Oceans Expedition (2009-2013).
DOI: 10.1594/pangaea.836318
title: [RAW VALIDATED DATA] Properties of seawater and particulate matter from a WETLabs AC-S spectrophotometer and a WETLabs chlorophyll fluorometer mounted on the continuous surface water sampling system during the Tara Oceans expedition 2009-2013

description: The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of evironmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data publication provides raw validated data files containing measurements from the Continuous Surface Sampling System [CSSS]. Water was pumped at the front of the vessel from ~2m depth, then de-bubbled and circulated to a WETLabs AC-S spectrophotometer and a WETLabs chlorophyll fluorometer. Systems maintenance (instrument cleaning, flushing) was done approximately once a week and in port between successive legs. All data were stamped with a GPS.
description: Funding for the collection and processing of the AC-S data set collected on board Tara was provided by NASA Ocean Biology and Biogeochemistry program under grants NNX15AC08G, NNX13AE58G, NNX11AQ14G and NNX09AU43G to the University of Maine
DOI: 10.1594/pangaea.836320
title: [RAW VALIDATED DATA] Properties of seawater from a Sea-Bird TSG temperature and conductivity sensor mounted on the continuous surface water sampling system during the Tara Oceans expedition 2009-2013

description: The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of evironmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data publication provides raw validated data files containing measurements from the Continuous Surface Sampling System [CSSS]. Water was pumped at the front of the vessel from ~2m depth, then de-bubbled and circulated to a Sea-Bird TSG temperature and conductivity sensor. Systems maintenance (instrument cleaning, flushing) was done approximately once a week and in port between successive legs. All data were stamped with a GPS.
DOI: 10.1594/pangaea.842191
title: Registry of all campaigns (from port to port) from the Tara Oceans Expedition (2009-2013)

description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set is a registry of all campaigns (from port to port) conducted during the Tara Oceans Expedition (2009-2013). The registry provides details about the scientific interest of each campaign, including direct links (URLs) to the corresponding (1) campaign report, (2) samples collected during the campaign, (3) environmental data published at PANGAEA, and (4) nucleotides data published at the European Nucleotides Archive (EBI-ENA).
DOI: 10.1594/pangaea.842237
title: Registry of all stations from the Tara Oceans Expedition (2009-2013)

description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set is a registry of all stations conducted during the Tara Oceans Expedition (2009-2013). The registry provides details about the scientific interest of each station, including (1) the geographic context, (2) legal context, (3) the environmental features that were targeted, and (4) a detailed account of devices deployed during the station. Uniform resource locators (URLs) offer direct links to the corresponding (1) physical oceanographic context reports, (2) list of samples collected during the station, (3) environmental data published at PANGAEA, and (4) nucleotides data published at the European Nucleotides Archive (EBI-ENA).