cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25751097.v2
title: Preprocessed Dataset

description: Preprocessed dataset for each subject
<br>
Note on version 2:
The initial release was missing preprocessed data for three subjects; however, this issue has now been resolved. And the missing component has been added as an additional 7Gb file.
DOI: 10.6084/m9.figshare.13332713.v1
title: Supplementary Material for: Emerging Adults in Inpatient Substance Use Treatment: A Prospective Cohort Study of Patient Characteristics and Treatment Outcomes

description: <b><i>Introduction:</i></b> Compared to older adults, emerging adults treated for substance use disorders (SUDs) are more likely to have unfavorable outcomes. However, few studies have investigated the baseline characteristics and treatment outcomes of emerging adults in inpatient SUD treatment. <b><i>Aims:</i></b> This study investigated differences in demographic and clinical characteristics and treatment outcomes (relapse or treatment discontinuation) among emerging adult and adult inpatients. Prospective associations between baseline characteristics and unfavorable treatment outcomes were also analyzed across both patient groups. <b><i>Methods:</i></b> A prospective cohort study was conducted among inpatients (<i>n</i> = 499) at 4 SUD treatment centers in Norway. The sample included emerging adult patients aged 18–25 years (<i>n</i> = 149) and adult patients above 25 years (<i>n</i> = 350). Medical records provided data on sociodemographic variables, substance use characteristics, diagnoses, and treatment completion status. Self-reported measures, including age of onset of substance use, motivation, and mental distress, were completed within 2 weeks of admission to treatment. A telephone interview 3 months after discharge provided information about relapses. <b><i>Results:</i></b> Emerging adults had a more adverse risk profile in terms of demographic characteristics, clinical variables, and treatment outcomes. Multivariable results showed that polysubstance use and an attention deficit hyperactivity disorder (ADHD) diagnosis were the strongest predictors of unfavorable treatment outcomes for emerging adults. For older adults, only baseline mental distress was a significant predictor of unfavorable treatment outcomes. <b><i>Conclusions:</i></b> Treatment and follow-up initiatives could be better tailored for emerging adults. Identification of treatment needs among emerging adults manifesting polysubstance use and ADHD may reduce the likelihood of unfavorable treatment outcomes in this patient group.
DOI: 10.6084/m9.figshare.26503045.v1
title: Supplementary Material for: Acupuncture for Aromatase Inhibitor-Induced Arthralgia in Breast Cancer: An Umbrella Review

description: Abstract
Background: Acupuncture therapy shows promise in managing aromatase inhibitor-induced arthralgia (AIA) among breast cancer patients. An umbrella review synthesizes findings from systematic reviews and meta-analyses (SRs/MAs) to assess its effectiveness. Summary: This umbrella review aims to evaluate the effectiveness of acupuncture therapy in treating AIA among breast cancer patients by analyzing existing evidence from SRs/MAs. Key Messages: Evidence Evaluation: Six SRs/MAs were analyzed, revealing shortcomings in reporting quality, methodological quality, and evidence quality assessment.Methodological Analysis: Comprehensive searches across eight electronic databases were conducted. PRISMA, AMSTAR 2, and GRADE were utilized to assess reporting, methodological quality, and evidence quality, respectively.
Efficacy of Acupuncture: Despite methodological shortcomings, recent meta-subgroup analysis suggests the efficacy of acupuncture therapy for AIA patients, recommending a 10-session treatment course. Conclusion: Acupuncture is identified as a secure and effective remedy for AIA sufferers, yet further high-quality research is needed to strengthen the evidence base and endorse acupuncture as a viable treatment option.
DOI: 10.6084/m9.figshare.26894113.v2
title: Cartesian Coordinates and Energies for DFT and CASSCF studies and source data for "Praseodymium in the Formal +5 Oxidation State"

description: Characterization of a pentavalent praseodymium complex
DOI: 10.6084/m9.figshare.29069954.v1
title: Supplementary Material for: Initial caries lesions in preschool children are not a risk factor for caries in adolescents

description: Caries experience in primary teeth has been highlighted as the most important single risk factor for caries development in the subsequent permanent teeth, but at cavitated stages. This 10-year cohort study aimed to evaluate whether children with only initial caries lesions in the primary teeth could also have a higher risk for caries incidence in permanent teeth. We evaluated Brazilian preschoolers aged 1 to 5 years in 2010 (T1) and re-evaluated them 2 (T2), 7 (T3), and 10 (T4) years later. Dental caries in primary and permanent teeth was assessed through the International Caries Detection and Assessment System (ICDAS). For the primary dentition (T1 and T2), the participants were categorized according to caries severity in the first two assessments into children with (i) no caries, (ii) only initial caries lesions (ICDAS scores 1 and 2), (iii) at least one moderate lesion (ICDAS scores 3 and 4), and (iv) extensive caries lesions (ICDAS scores 5 and 6). We also created a dichotomous variable considering only extensive lesions. Demographic and socioeconomic data were also collected. For the permanent dentition (T3 and T4), the participants were re-evaluated for extensive caries lesions after 7 and 10 years of follow-up. The outcome variables were the number of decayed, extracted, and filled surfaces of permanent teeth (D3MFS) and the occurrence of any extensive lesion (caries incidence) after 10 years. Associations were evaluated through negative binomial and Poisson regression analyses, respectively. Incidence rate ratios (IRR) and Relative Risks, along with 95% confidence intervals (95%CI), were derived. At the baseline, 639 children were included, and 429 were reassessed after 10 years (67.2% of retention rate). Children with only initial or moderate caries lesions did not have a higher risk of caries in permanent teeth. By contrast, children with extensive caries lesions were more likely to develop caries in the permanent dentition than children without caries (IRR, 95% CI = 2.90, 1.98 to 4.23). This higher risk was more clearly demonstrated when the caries experience was used as a dichotomous variable (IRR, 95% IC = 4.02, 2.38 to 6.78). In conclusion, children with only initial caries lesions do not have a higher risk of developing dental caries in the permanent dentition by adolescence.
DOI: 10.17632/3sdb6hck2c
title: OpenSBLI v3.0: High-fidelity multi-block transonic aerofoil CFD simulations using domain specific languages on GPUs

description: OpenSBLI is an automatic code-generation framework for compressible Computational Fluid Dynamics (CFD) simulations on heterogeneous computing architectures (previous release: Lusher et al. (2021) [4]). OpenSBLI is coupled to the Oxford Parallel Structured (OPS) Domain Specific Language (DSL), which uses source-to-source translation to enable parallel execution of the code on large-scale supercomputers, including multi-GPU clusters. To date, OpenSBLI has largely been applied to compressible turbulence and shock-wave/boundary-layer interactions on very simple geometries comprised of single mesh blocks with essentially orthogonal grid lines. OpenSBLI has been extended in this new release to target strongly curvilinear cases, including transonic aerofoils using multi-block grids. In addition to multi-block mesh support, more efficient numerical shock-capturing methods and filters have been added to the codebase. Improvements to post-processing, reduced-dimension data output, and coupling to a modal decomposition library are also included. A set of validation cases are presented to showcase the new code features. Furthermore, state-of-the-art wide-span transonic aerofoil simulations on up to N = 2.5 x 10^9 grid points demonstrate that wider aspect ratios can alter buffet predictions and increase the regularity of the low-frequency shock oscillations by accommodating fully-developed trailing edge flow separation. Spectral Proper Orthogonal Decomposition (SPOD) analysis showed that overly-narrow aerofoil simulations contain additional domain-dependent energy content at a Strouhal number of St ≈ 3 associated with wake modes.
DOI: 10.17632/ht52gbr4gk
title: Japanese Preboundary lengthening for Data in Brief
DOI: 10.6084/m9.figshare.27941376.v1
title: Genomic Diversity and Antimicrobial Resistance of Vibrio spp. Isolates from Africa: A PulseNet Africa Initiative Using Nanopore Sequencing to Enhance Genomic Surveillance

description: Whole genome sequence assemblies of Vibrio cholerae isolates collected from outbreaks and routine surveillance in Ghana, Cote d'Ivoire, Zambia and South Africa, generated via Oxford Nanopore Technology sequencing.
DOI: 10.6084/m9.figshare.1194573.v1
title: The Abundance and Variations Within Insects

description: The abundance of insects was examined in two different environments at York University’s Keele Campus. This was observed by a total of twenty different quadrat samplings in both a grassland and woodlot. Ten quadrats were randomly placed in grassland, each observed for thirty seconds. The number and specie of insects present in each individual quadrat within thirty seconds were observed and identified. Insects were solely based on the presence of wings, and their common name was noted. The number of different species identified in each quadrat was noted as the different recognizable taxonomic unit (rtus). The total number of insects of all the species combined in each quadrat were counted and noted by the researcher. This process was then repeated another ten times in the woodlot. Once again, the researcher placed ten quadrats randomly in the woodlot and observed the different species and number of insects present in the quadrat within thirty seconds. The criterion for identifying insects remained the same as used in the grassland, and the specie, different recognizable taxonomic units, and total number of insects was noted following the same procedures and criteria used in the grassland. Overall, twenty different quadrats were examined, and the abundance of insects were noted; ten in the grassland and ten in the woodlot.
DOI: 10.6084/m9.figshare.2055684.v1
title: Geological history of the Panarea volcanic group (eastern Aeolian archipelago)

description: The full geochemical data set for the Panarea volcanic group in csv format.
DOI: 10.6084/m9.figshare.21440739.v1
title: Example babyAFQ BIDS subject

description: Example subject in BIDS for use with babyAFQ. Includes tractography and other derivatives generated by MRtrix.
DOI: 10.6084/m9.figshare.28458404.v1
title: Effects of simulated climate change on soil characteristics under <i>Carpobrotus edulis</i> invasion in a coastal backdune

description: Data used in the study https://doi.org/10.1007/s1104-025-07437-z
DOI: 10.6084/m9.figshare.3555429.v1
title: Appendix B. Complementary analyses using seasonal indices.

description: Complementary analyses using seasonal indices.
DOI: 10.6084/m9.figshare.23898690.v1
title: Data for the paper: Dryland sensitivity to climate change and variability using nonlinear dynamics

description: This file contains the data used in the paper: Dryland sensitivity to climate change and variability using nonlinear dynamics. The first dataset (Data for dryland sensitivity_annual productivity and climates.csv) contains the time-series data of annual productivity and climate variables (annual precipitation, annual mean temperature, summer mean temperature, and annual SPEI). The second dataset (Data for dryland sensitivity_productivity and interannual climate variability.csv) contains the data of mean annual productivity and interannual climate variability (interannual precipitation variability, interannual temperature variability, interannual summer temperature variability, and interannual SPEI variability) in 6y moving windows.
DOI: 10.6084/m9.figshare.25605426.v2
title: Supplemental Data File 9_PKD_12m_vs_WT_12m_Downregulated Genes.xlsx

description: Supplemental Data File 9_PKD_12m_vs_WT_12m_Downregulated Genes.xlsx
DOI: 10.6084/m9.figshare.27478197.v1
title: 16S and SCFA data from "A Diverse Set of Solubilized Natural Fibers Drives Structure-Dependent Metabolism and Modulation of the Human Gut Microbiota"

description: Raw data from 16S rRNA amplicon sequencing and SCFA quantification from fecal fermentations described in "A Diverse Set of Solubilized Natural Fibers Drives Structure-Dependent Metabolism and Modulation of the Human Gut Microbiota". For each modality, data is split into two sets--one for experiments run using a pooled fecal inoculum (labeled <b>pool1</b>), and one set for experiments run with individual fecal donors (labeled <b>multidonor</b>). Data is organized by modality and each modality contains subfolders for the two experimental datasets, along with metadata files.
DOI: 10.6084/m9.figshare.963509.v1
title: Earliest modern bandicoot and bilby (Marsupialia, Peramelidae and Thylacomyidae) from the Miocene of the Riversleigh World Heritage Area, northwestern Queensland, Australia

description: ABSTRACTRecent molecular phylogenies of peramelemorphians suggest that thylacomyids (bilbies) and peramelids (modern bandicoots) diversified sometime in the late Oligocene or early Miocene. Until now, however, the earliest fossil evidence of thylacomyids and peramelids was from the Australian Pliocene. Here we describe the oldest peramelid and thylacomyid from the middle Miocene of the Riversleigh World Heritage Area, northwestern Queensland. The peramelid, <i>Crash bandicoot</i>, gen. et sp. nov., is represented by a single maxilla containing M1–3 that exhibits peramelid synapomorphies, including development of a metaconular hypocone, an incomplete centrocrista, and well-developed anterior cingulum. The thylacomyid, <i>Liyamayi dayi</i>, gen. et sp. nov., is represented by M2 and m1, which show thylacomyid synapomorphies including a conical entoconid, a conical stylar cusp B (StB) and StD, and reduced distance between the metastyle and StD. The results of our phylogenetic analysis indicate that both species are part of crown-group Peramelemorphia. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP
DOI: 10.6084/m9.figshare.20009042.v1
title: Data for Damashek et al. 2022 Upper Oconee ARGs manuscript v2

description: Dataset for Damashek et al. 2022 manuscript on ARGs and fecal source tracking in the Upper Oconee River watershed (GA, USA). Updated from previous version to include volume of water sampled for each DNA sample. <br> Sheet 1: Gene abundances and sampling information for each DNA sample. Gene abundances are calculated as copies µL DNA–1, copies mL–1 site water, and as a ratio to bacterial 16S rRNA gene abundance. Sheet 2: Environmental data at sampling sites. Separate sheets show data and corresponding metadata. Site-linked sewer and septic data are withheld due to privacy concerns. Sheet 3: Correlations between genes. Correlations (Spearman’s<em> r</em>, Benjamini-Hochberg corrected <em>p</em>) between genes across the entire dataset. See Damashek et al. (in review) for analyses. Bibliographic information will be published here upon acceptance.
DOI: 10.6084/m9.figshare.3521222.v1
title: Appendix A. Estimating bioenergetic model parameters from synthesized literature data.

description: Estimating bioenergetic model parameters from synthesized literature data.
DOI: 10.17632/78p2rds4c6
title: Cole et al. 2021 Endocrinology Supplementary Material

description: Supplemental Material
DOI: 10.6084/m9.figshare.12958037.v1
title: Datasets

description: The benchmarking datasets used for deepBlink. The npz files contain train/valid/test splits inside and can be used directly. The files belong to the following challenges / classes:<br>- ISBI Particle tracking challenge: microtubule, vesicle, receptor- Custom synthetic (based on http://smal.ws): particle- Custom fixed cell: smfish- Custom live cell: suntag<br>The csv files are to determine which image in the test splits correspond to which original image, SNR, and density.
DOI: 10.6084/m9.figshare.17067449.v1
title: EDGAR-FOOD_v6

description: The EDGAR-FOODv6 dataset provides greenhouse gas emissions from the food system at the global level over the years 1990-2018. This dataset is created from the Emissions Database for Global Atmospheric Research (EDGARv6.0) and is described in detail in the following publication:<br> Crippa, M., Solazzo, E., Guizzardi, D., Monforti-Ferrario, F., Tubiello, F.N.<sup> </sup>and Leip, A.: <b>Food systems are responsible for a third of global anthropogenic GHG emissions</b>, Nature Food, 2021.<br><b> </b> The EDGAR-FOOD data are also available on the EDGAR website at the following link: https://edgar.jrc.ec.europa.eu/overview.php?EDGAR_FOOD
DOI: 10.6084/m9.figshare.5387701.v1
title: qPCR.xlsx

description: QPCR
DOI: 10.6084/m9.figshare.14317352.v1
title: Allelopathic effect of Carthamus tinctorius on weeds and crops

description: Abstract Background: Allelopathic plants like safflower (Carthamus tinctorius) can be considered as natural herbicides for weeds management in field. But there is not enough research on safflower genotypes allelopathy potential. Objective: So in this study, allelopathic effect of the four safflower genotypes on weeds (Amaranthussp., Hordeum spontaneum), crops (Sesamum indicum, Triticum aestivum) and on autotoxicity of Carthamus tinctorius was evaluated in bioassay using sandwich method. The results can be used in the management of weeds in safflower fields and also in the rotation with other crops. Methods: Two genotypes with high allelopathic potential and two genotypes with low allelopathic potential were selected from forty genotypes of safflower. Growth traits including radicle length, hypocotyl length, shoot length, fresh biomass weight and germination percentages were measured. Results: Results showed that Amaranthussp. and C. tinctorius displayed the most and least susceptibility to safflower residues, respectively. Khorasan (Khorasan330) and Egypt (PI657800) had the greatest with Kerman (CTNIR9) and Australia (PI 262424) had the least inhibitory effects on target plants. PI 262424 stimulated hypocotyl growth by 51%, 18% and 7% in H. spontaneum, T. aestivum and C. tinctorius, respectively. CTNIR9 enhanced this trait by 16% in T. aestivum and 10% in C. tinctorius. In large-seeded species (H. spontaneum, T. aestivum and C. tinctorius, Kerman (CTNIR9) and Australia (PI 262424) stimulated seedling growth. Conclusion: It can be concluded that effectiveness of allelopathic residues of safflower on target plants depended on the seed size of target plant with smaller seed size (Amaranthussp.) were more susceptible to allelopathic residues than those with larger ones. In addition radicle length was affected more than other growth traits by safflower residues.
DOI: 10.6084/m9.figshare.19214169.v1
title: RT-qPCR data

description: <b>Melt-curve plots.pdf</b>: qPCR melt curve plots of SRPK2 and CHDH generated using the QuantStudio 3 Real-time PCR software. The melt curves are generated by plotting Derivative Reporter (-Rn′) versus Temperature (°C).<br><br>SRPK2 Quetiapine.eds, SRPK2 Valproate.eds, CHDH Lamotrigine.eds, CHDH Quetiapine.eds: raw eds files generated by QuantStudio 3 Real-time PCR platform (Thermo Fisher Scientific)
DOI: 10.6084/m9.figshare.27691512.v1
title: <b>High-Resolution Spatial Map of the Human Facial Sebaceous Gland Reveals Marker Genes and Decodes Sebocyte Differentiation</b>

description: The file is a compressed tarball that can be unpacked using the command tar -xzf SG_objects_TD.tar.gz. This package contains the datasets for reproducing all results from the paper.
DOI: 10.6084/m9.figshare.28423175.v1
title: onek1k_subsampled.h5ad

description: Preprocessed h5ad built from https://onek1k.org/Processing was done as follows<br><br><br>
DOI: 10.6084/m9.figshare.28943954.v1
title: 16S clean data from the rhizosphere soil of different soybean cultivars

description: 16S clean data from the rhizosphere soil of different soybean cultivars planted in the soil with different pH values
DOI: 10.17632/bmzwzwcw9w
title: Emotional map of Prague

description: This dataset presents the data from the participatory emotional mapping in Prague, Czech Republic. It contains 98,364 points complemented with 30,941 comments from 5,973 respondents from across whole Prague (1,335,084 inhabitants according to (Czech Statistical Office, 2021)). There were eight questions/statements common for whole all of Prague, furthermore, each Prague district (n=27) could add up to seven questions/statements. The data were collected via our own participatory mapping platform EmotionalMaps.eu from April to September 2021.
DOI: 10.25383/city.23986881.v1
title: HEALTHEI Scoping Review dataset and analysis_3May2023.xlsx

description: This document provides data on the methods and analysis for the 'HEALTHEI Project scoping review: understanding the use of media analysis in public health research through food tax debates.' It provides the raw data for our database searches and documents the screening and coding processes. The spreadsheet includes 12 tabs:'Scopus(88)', 'PubMed(318)', 'EbscoHost initial search (681)' and 'EbscoHost Screen1 (132)' -- provide the exported databse results into the Excel document for screening; first phase screening excluded irrelevant articles (not tax or food focused) based on the headline'Metadata_combined' -- groups all database results within one tab'MDTA_review_R1', 'MDTA_review_R2' and 'MDTA_review_R3' -- Documents the screening process for exported results, including the reason for exclusion (rounds 1, 2 and 3)'Sheet1' -- Lists early draft inclusion and exclusion criteria'Final List' -- Provides the manifest data and inclusion/ exclusion criteria for final sample articles, grouped in a separate tab for review by multiple project members and final approval for analysis'SR_Chart' -- Provides the coding framework and documents the coding process; two authors individually read all sample articles and extracted data on the journal articles' aims, media sources, methods, frames identified, results and conclusions. Each coder used a different text colour (ABC = black, RH = blue) and results were regularly compared and discussed between coders to establish agreement'Journals' -- List of academic journals for potential publication
DOI: 10.6084/m9.figshare.19410896.v1
title: Butterflies of the Indian Himalaya along with Nepal and Bhutan

description: Butterflies of the Indian Himalaya along with Nepal and Bhutan
DOI: 10.6084/m9.figshare.20444397.v1
title: Diabetes Datasets-ShanghaiT1DM and ShanghaiT2DM

description: These two datasets from Type 1 Diabetes and Type 2 Diabetes patients in Shanghai, China.
DOI: 10.6084/m9.figshare.22300333.v2
title: Paper 3 IFOMSSA Supplementary Interview All Recordings and Summarised Transcripts.docx

description:   
Qualitative insights into the efficacy and impact of an educational scholarship scheme designed to engage communities in incentivizing high school students of developing African countries in order to optimise test scores and expedite SDG-4 actualisation.
DOI: 10.6084/m9.figshare.6061262.v1
title: DOIs.xlsx

description: List of PloS One DOIs with their altmetrics counts across different altmetric data aggregators used in the following paper:<br>Zahedi, Z., Costas, R. (2018). General discussion of data quality challenges in social media metrics: extensive comparison of four major altmetric data aggregators. PloSOne.<br>