cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18739/a2hd7ns18
title: S01MAR13B

description: EBSD data from crept polycrystalline lab ice
DOI: 10.15468/dl.5mkscf
title: Occurrence Download

description: A dataset containing 18104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.1_1",
 "TaxonKey is Plantae",
 "Year 2015-2020"
 ]
}

 The dataset includes 18104 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012848-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2vm42x0k
title: S20NOV12B

description: EBSD data from crept polycrystalline lab ice
DOI: 10.18739/a2qz22g82
title: S27FEB13D

description: EBSD data from crept polycrystalline lab ice
DOI: 10.18739/a2gf0mw03
title: Strain Rate Data

description: Strain rate data on polycrystalline ice
DOI: 10.18739/a2348gf9g
title: Electron backscatter diffraction, United States, 2010-2015

description: EBSD data from crept polycrystalline lab ice
DOI: 10.18739/a2zc7rt43
title: Strain-Induced Fabric Development in Ice under Hydrostatic Pressure

description: Support is provided to allow the PIs to understand and model, through an improved understanding of grain boundary migration processes in deforming ice, the following phenomena: 1. The survival of extensive deformation and domination of the microstructure at depth of favorably-oriented grains, 2. The growth of slipping grains in the direction of shear, and whether this is a function of the relative orientations of neighboring grains or a fundamental characteristic of slipping grains, and 3. The effects of pressure on the rate and/or balance of the processes responsible for fabric development at depth. Their working hypothesis is that slipping grains can propagate without requiring recrystallization, and that this process is closely associated with anisotropy in grain boundary mobility during deformation. To seek evidence of these mechanisms, they propose the following series of laboratory observations on granular freshwater ice: 1. Conduct confined compression experiments at low deviatoric stresses and a range of pressure and temperature to develop a preferred c-axis orientation and cause growth. 2. Use standard techniques to document c-axis orientations, grain size and shape of the deformed microstructures for several temperatures and shear stress levels. 3. Employ electron backscatter pattern (EBSP) analysis to document a- and c-axis orientations of slipping and abutting grains in the deformed material. 4. Use surface etching to identify slip line arrays in the deforming grains, and couple these observations with the grain boundary structures observed in the EBSP results. The fundamental understanding derived from this study is anticipated to foster improved understanding of paleoclimate as derived from the interpretation of ice cores, as well as improved models of glacier and ice sheet mechanics.
DOI: 10.18739/a2319s25p
title: Micropulse lidar (MPL) measurements taken at Summit Station, Greenland, 2017

description: This data set contains measurements from a MicroPulse LIDAR (MPL) that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project.
DOI: 10.57745/sii1xj
title: Microscope_image_100x.jpg
DOI: 10.57745/e5lfpg
title: Silicon_[1x1s_532nm_100%_100x_100Âµm_1800 gr_mm]_01.l6s
DOI: 10.57745/ol0mzv
title: README.txt
DOI: 10.57745/pl45de
title: Silicon_[1x1s_532nm_100%_100x_100Âµm_1800 gr_mm]_01.txt
DOI: 10.18739/a2pr7mt2s
title: Ceilometer Cloud Base Height Measurements at Summit Station, Greenland, 2017

description: This data set contains measurements from a Vaisala ceilometer that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. This ceilometer points near-vertically and provides estimates of cloud base height (for up to three layers) and the total visibility, based on Vaisala's proprietary algorithm. Detailed information on these parameters and other aspects of the dataset are included in the netCDF header information for each file. The ceilometer is owned by the Department of Energy Atmospheric Radiation Measurement Program. Field operations support is provided by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.18739/a29k45s4n
title: Cloud and Aerosol Polarization and Backscatter LiDAR measurements taken at Summit Station, Greenland, 2017

description: This data set contains measurements from a Cloud and Aerosol Polarization and Backscatter LiDAR (CAPABL) that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. This LiDAR points near-vertically and measures backscatter in three polarization states. Parameters include: backscatter in the parallel channel, the depolarization ratio, and the diattenuation. Detailed information on these parameters and other aspects of the dataset are included in the netCDF header information for each file. The LiDAR is owned by the National Oceanic and Atmospheric Administration's Earth System Research Laboratory. Field operations support is provided by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.18739/a25t3fz9d
title: Cloud and Aerosol Polarization and Backscatter LiDAR measurements taken at Summit Station, Greenland, 2018

description: This data set contains measurements from a Cloud and Aerosol Polarization and Backscatter LiDAR (CAPABL) that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. This LiDAR points near-vertically and measures backscatter in three polarization states. Parameters include: backscatter in the parallel channel, the depolarization ratio, and the diattenuation. Detailed information on these parameters and other aspects of the dataset are included in the netCDF header information for each file. The LiDAR is owned by the National Oceanic and Atmospheric Administration's Earth System Research Laboratory. Field operations support is provided by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.18739/a2bc3sw7r
title: Millimeter Cloud Radar measurements taken at Summit Station, Greenland, 2016

description: This data set contains measurements from a Millimeter Cloud Radar (MMCR) that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. The MMCR points near-vertically and provides estimates of radar reflectivity, mean Doppler velocity, and Doppler spectrum width, as well as full Doppler spectra. Detailed information on these parameters and other aspects of the dataset are included in the netCDF header information for each file. The MMCR is owned by the National Oceanic and Atmospheric Administration, Earth System Research Laboratory. Field operations support is provided by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.15468/dl.rwc6ra
title: Occurrence Download

description: A dataset containing 857610 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 857610 records from 905 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006377-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a26m3333d
title: Millimeter Cloud Radar measurements taken at Summit Station, Greenland, 2017

description: This data set contains measurements from a Millimeter Cloud Radar (MMCR) that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. The MMCR points near-vertically and provides estimates of radar reflectivity, mean Doppler velocity, and Doppler spectrum width, as well as full Doppler spectra. Detailed information on these parameters and other aspects of the dataset are included in the netCDF header information for each file. The MMCR is owned by the National Oceanic and Atmospheric Administration, Earth System Research Laboratory. Field operations support is provided by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.18739/a2f47gt18
title: Millimeter Cloud Radar measurements taken at Summit Station, Greenland, 2018

description: This data set contains measurements from a Millimeter Cloud Radar (MMCR) that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. The MMCR points near-vertically and provides estimates of radar reflectivity, mean Doppler velocity, and Doppler spectrum width, as well as full Doppler spectra. Detailed information on these parameters and other aspects of the dataset are included in the netCDF header information for each file. The MMCR is owned by the National Oceanic and Atmospheric Administration, Earth System Research Laboratory. Field operations support is provided by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.18739/a24q7qp7b
title: Precipitation Occurrence Sensor System measurements taken at Summit Station, Greenland, 2017

description: This data set contains measurements of reflectivity and derived estimates of snowfall rate made by a Precipitation Occurrence Sensor System (POSS) that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. The POSS makes measurements in an approximately one cubic meter volume just above the sensor and is designed to quantify the amount of precipitation reaching the surface. Data files contain timeseries of the observed radar reflectivity and other supporting radar measureables as well as the derived snowfall rate in mm/hr. Detailed information on these parameters and other aspects of the dataset are included in the netCDF header information for each file. The POSS is operated by Matthew Shupe at the University of Colorado and is on loan from Environment Canada. Field operations are supported by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.15468/dl.5dzbf2
title: Occurrence Download

description: A dataset containing 26831 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Canada",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is e2e717bf-551a-4917-bdc9-4fa0f342c530",
 "TaxonKey is Branta canadensis (Linnaeus, 1758)",
 "Year 1980-1990"
 ]
}

 The dataset includes 26831 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027662-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a20z70w42
title: Precipitation Occurrence Sensor System measurements taken at Summit Station, Greenland, 2018

description: This data set contains measurements of reflectivity and derived estimates of snowfall rate made by a Precipitation Occurrence Sensor System (POSS) that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. The POSS makes measurements in an approximately one cubic meter volume just above the sensor and is designed to quantify the amount of precipitation reaching the surface. Data files contain timeseries of the observed radar reflectivity and other supporting radar measureables as well as the derived snowfall rate in mm/hr. Detailed information on these parameters and other aspects of the dataset are included in the netCDF header information for each file. The POSS is operated by Matthew Shupe at the University of Colorado and is on loan from Environment Canada. Field operations are supported by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.18739/a2w66979s
title: Radiosonde temperature and humidity profiles taken at Summit Station, Greenland, 2017

description: This data set contains profiles of temperature and humidity observed by Vaisala radiosondes that are launched nominally twice daily at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. The data are processed using the standard Vaisala processing software.
DOI: 10.18739/a2rf5kf45
title: Radiosonde temperature and humidity profiles taken at Summit Station, Greenland, 2018

description: This data set contains profiles of temperature and humidity observed by Vaisala radiosondes that are launched nominally twice daily at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. The data are processed using the standard Vaisala processing software.
DOI: 10.15468/dl.sp63xf
title: Occurrence Download

description: A dataset containing 596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eryngium dilatatum Lam.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 596 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027663-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2v698b7k
title: SOnic Detection And Ranging (SODAR) measurements taken at Summit Station, Greenland, 2017

description: This data set contains measurements from a sodar that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project.
DOI: 10.18739/a2qf8jj3f
title: SOnic Detection And Ranging (SODAR) measurements taken at Summit Station, Greenland, 2018

description: This data set contains measurements from a sodar that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project.
DOI: 10.18739/a2kp7tq9p
title: Ceilometer Cloud Base Height Measurements at Summit Station, Greenland, 2018

description: This data set contains measurements from a Vaisala ceilometer that is deployed at Summit Station, Greenland as part of the Integrated Characterization of Energy, Clouds, Atmospheric state, and Precipitation at Summit (ICECAPS) Project. This ceilometer points near-vertically and provides estimates of cloud base height (for up to three layers) and the total visibility, based on Vaisala's proprietary algorithm. Detailed information on these parameters and other aspects of the dataset are included in the netCDF header information for each file. The ceilometer is owned by the Department of Energy Atmospheric Radiation Measurement Program. Field operations support is provided by the National Science Foundation's Arctic Observing Network (AON) Program.
DOI: 10.18739/a2xg9f982
title: Soil properties and plant functional group biomass, Emerald Lake, Kluane Lake Region, Yukon Territory, Canada, 2015

description: The effects of changes in composition in determining ecosystem properties may be determined by the identity of the plants, their respective biomass in the community, and also by the ability of the remaining vegetation to compensate for their loss. We used the graminoid removal treatment from a long-term (12 year) removal experiment to examine the role of graminoids in determining ecosystem properties and also the potential for biomass compensation by remaining species in a grassland in northern Canada. We conducted removals in both fertilized and non-fertilized environments to examine the context-dependency of graminoid effects. In the summer of 2015 (after 12 years of treatments) we sampled above-ground biomass of each functional group (as determined by allometry), soil physical properties (moisture, pH), soil nutrient content (Extractable organic carbon and total nitrogen, ammonium, nitrate and phosphate) and microbial properties (microbial biomass carbon and nitrogen, extracellular enzyme activity).
DOI: 10.18739/a2n872z8q
title: Autonomous Ice Mass Balance Buoy Observations, Buoy 2003E, Laptev Sea, Arctic Ocean, 2003

description: These datasets contain information gathered from buoy 2003E. Data and metadata are stored as 5 CSV files: Position data, Meteorological data, Mass balance data, Temperature data, and Metadata.
DOI: 10.18739/a2kd1qk27
title: Aerial census of reindeer in Taimyr, Russia, 1991

description: The dataset is a part of a comprehensive information system that provides insight into the historical relationship between humans, climate, environment, and reindeer in Taimyr, Russia. This dataset is a product of digitization and reanalysis of historical aerial observational data collected in 1969 by the researchers from the Extreme North Agriculture Research Institute. The data contain spatial data representation and descriptions based on the approximate flight paths undertaken in July of 1969 reconstructed from the unpublished aerial census report and data log.
 The Taimyr Reindeer Migration Reanalysis (TAMARA) project is an integral part of the worldwide network of reindeer observation programs.
DOI: 10.18739/a2fq9q518
title: Aerial census of reindeer in Taimyr, Russia, 1990

description: The dataset is a part of a comprehensive information system that provides insight into the historical relationship between humans, climate, environment, and reindeer in Taimyr, Russia. This dataset is a product of digitization and reanalysis of historical aerial observational data collected in 1969 by the researchers from the Extreme North Agriculture Research Institute. The data contain spatial data representation and descriptions based on the approximate flight paths undertaken in July of 1969 reconstructed from the unpublished aerial census report and data log.
 The Taimyr Reindeer Migration Reanalysis (TAMARA) project is an integral part of the worldwide network of reindeer observation programs.
DOI: 10.18739/a29z90b8c
title: Aerial census of reindeer in Taimyr, Russia, 1989

description: The dataset is a part of a comprehensive information system that provides insight into the historical relationship between humans, climate, environment, and reindeer in Taimyr, Russia. This dataset is a product of digitization and reanalysis of historical aerial observational data collected in 1969 by the researchers from the Extreme North Agriculture Research Institute. The data contain spatial data representation and descriptions based on the approximate flight paths undertaken in July of 1969 reconstructed from the unpublished aerial census report and data log.
 The Taimyr Reindeer Migration Reanalysis (TAMARA) project is an integral part of the worldwide network of reindeer observation programs.
DOI: 10.18739/a26688j4j
title: Aerial census of reindeer in Taimyr, Russia, 1988

description: The dataset is a part of a comprehensive information system that provides insight into the historical relationship between humans, climate, environment, and reindeer in Taimyr, Russia. This dataset is a product of digitization and reanalysis of historical aerial observational data collected in 1969 by the researchers from the Extreme North Agriculture Research Institute. The data contain spatial data representation and descriptions based on the approximate flight paths undertaken in July of 1969 reconstructed from the unpublished aerial census report and data log.
 The Taimyr Reindeer Migration Reanalysis (TAMARA) project is an integral part of the worldwide network of reindeer observation programs.
DOI: 10.18739/a22f7jq99
title: Aerial census of reindeer in Taimyr, Russia, 1986

description: The dataset is a part of a comprehensive information system that provides insight into the historical relationship between humans, climate, environment, and reindeer in Taimyr, Russia. This dataset is a product of digitization and reanalysis of historical aerial observational data collected in 1969 by the researchers from the Extreme North Agriculture Research Institute. The data contain spatial data representation and descriptions based on the approximate flight paths undertaken in July of 1969 reconstructed from the unpublished aerial census report and data log.
 The Taimyr Reindeer Migration Reanalysis (TAMARA) project is an integral part of the worldwide network of reindeer observation programs.
DOI: 10.5281/zenodo.13926361
title: Integrative determination of atomic structure of mutant huntingtin exon 1 fibrils implicated in Huntington disease — data files

description: This zenodo entry contains MD and solid-state NMR data files for the paper:

 

Mahdi Bagherpoor Helabad et al. (2024)  Integrative determination of atomic structure of mutant huntingtin exon 1 fibrils implicated in Huntington disease

 

 

MD datasets and code

We provide here (in MD_simulations_data_codes.zip) the MD simulations files for the MD runs and also data, and their respective codes, shown in the figures of the above papers.

 

Data file structure: 

MD_data 



The MD simulation run files for three fully periodic systems—PolyQ15 and HTTex1—include the following: .gro files for both minimization and final structures, production .tpr files, force field parameters, GROMACS .mdp files, and position and dihedral restraint files.



fully_periodic_systems

polyQ15

HTTex1




Figs_Data_Codes





The data and in-house Python scripts associated with creating the figures:



Fig2B_S4 for Figure 2B and Supplementary Figure 4

Fig2D_S5 for Figure 2D and Supplementary Figure 5

Fig3C_S10 for Figure 3C and Supplementary Figure 10

Fig4_S12_S13_S14 for Figure 4C and Supplementary Figures 12–14

Fig6C for Figure 6C

FigS3B_S6 for Supplementary Figures 3B and 6

FigS8 for Supplementary Figure 8

FigS9_S11 for Supplementary Figures 9–11

FigS16_to_S21 for Supplementary Figures 16–21

FigS22 for Supplementary Figure 22

readMe.txt

 






Fig6_c_barplot_data.xlsx





Excel file with data plotted in Figure 6C.


N17_SecStr_convergence.xlsx





Excel file with convergence data for N17 domain.




Solid-state NMR data

We provide here the solid-state NMR spectrum files for the data shown in figures of the above paper.

 

Data file structure:

 

SSNMR_data_listing_20241011a.txt





text file describing the ssNMR data files



SSNMR_data.zip



Figure_1 - data for Figure 1F

Figure_5 - data for Figure 5

Figure_6 - data for Figure 6

Figure_S7 - data for Figure 2G and Supplementary Figure 7

Figure_S15 - NMR data for HDX ssNMR of fibrils – Supplementary Figure 15


Fig6_b_barplot_data.xlsx





Excel file with data plotted in Figure 6B, based on previously reported results (DOI 10.1038/ncomms15462)



 

Data are provided in either Bruker Topspin format, or in NMRPIPE format (ft2 extension).

Experimental parameters are described in the published paper and its Supplementary Information files. In general, these are all data from magic-angle-spinning (MAS) NMR studies of intact amyloid fibrils made with isotope labeled HTTex1 fibrils. Experimental types include 2D CP-DARR, 2D TOBSY, 2D HETCOR spectra as well as relaxation measurements.  Aside from NMR datafiles, also documents with interpreted and integrated data are included, used to make data curves in the figure (e.g. for Prism software).