cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27908838.v1
title: Global Impacts Dataset of Invasive Alien Species (GIDIAS)

description: We present the Global Impacts Dataset of Invasive Alien Species (GIDIAS), a global dataset of 22865 records including impacts of invasive alien species on nature, nature’s contributions to people, and good quality of life. Records include positive and negative impacts, neutral impacts (studies were carried out, but no impacts were documented), non-directional impacts (i.e., change without detriments or benefits for native species or people), and finally, some records of alien species where no studies were found that assessed their impacts (indicating data gaps). Records cover 3353 invasive alien species from all major taxa (plants, vertebrates, invertebrates, microorganisms) and all continents and realms (terrestrial, freshwater, marine). The data were compiled to serve as robust evidence for chapter 4 “Impacts of invasive alien species on nature, nature's contributions to people, and good quality of life” of the global assessment report on invasive alien species by the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES; available on Zenodo at https://doi.org/10.5281/zenodo.7430731).
The dataset is provided in a machine-readable CSV file (file name GIDIAS_20250417_machine_read.csv), with special language characters retained where used (UTF-8 format). The dataset is also provided in Excel format (file name GIDIAS_20250417_Excel.xlsx). Metadata is provided in Excel format, including descriptors for each variable (file name GIDIAS_metadata_20250417.xlsx). Additional explanations for GIDIAS is stored in Microsoft Word format (docx) and contains (1) a short description of the principles of Environmental and Socio-Economic Impact Classification for Alien Taxa (EICAT, SEICAT), (2) a description of the variables included in the Global Impacts Dataset of Invasive Alien Species GIDIAS, and (3) a compilation of the search strategies and datasets included in the Global Impact Dataset of Invasive Alien Species (GIDIAS).
DOI: 10.6084/m9.figshare.27989726.v2
title: salivary microbiome and metabolites associated with immunotherapy efficacy in lung cancer

description: Lung cancer is a leading cause of cancer mortality, with NSCLC comprising the majority of cases. Despite the advent of immune checkpoint inhibitors(ICIs), a significant number of patients fail to achieve durable respond, highlighting the need to understand the factors influencing treatment efficacy.Salivasamples and tumor samplesfrom 20 NSCLC patientswere collected. The salivary microbiota was profiled using mNGS and the metabolites were analyzed via LC/MS to identify the correlationsamong bacteria, metabolitesand immunotheropy responses.
DOI: 10.17632/jdc7y9yvxf
title: DRAK2 aggravates nonalcoholic fatty liver disease progression through SRSF6-associated RNA alternative splicing. Li yufeng, et al.

description: Raw data from the article CELL-METABOLISM-D-21-00185 Figures 1, 4-7, S1-S3 and S6-S7 were deposited in a separate zip file below.
DOI: 10.6084/m9.figshare.12720569.v2
title: Raw data for “Deep neural network solution of the electronic Schrödinger equation”

description: Contains raw data generated by DeepQMC used to generate figures in the manuscript “Deep neural network solution of the electronic Schrödinger equation”.<br>All files are to be placed in the directory data/raw/ of the noegroup/dlqmc-project Github repository. "cyclobutadiene.tar" is to be unpacked, "data_pub_small_systems.h5.*" are to be concatenated (split because of figshare's file size limit).
DOI: 10.6084/m9.figshare.23709573.v1
title: City-level ETI scores.xlsx

description: The global target of limiting the increase in temperature to 1.5°C requires a shift from fossil fuels to renewable sources of energy, particularly in urban areas that house over half of the world's population and are major consumers of energy and emitters of carbon. However, cities vary in their energy systems and socioeconomic capacities to transition to renewable energy. To address this heterogeneity, this study proposes an Energy Transition Index (ETI) specifically designed for cities, and applies it to track the progress of energy transition in Chinese cities. The city-level ETI framework is based on the national ETI developed by the World Economic Forum (WEF) and comprises two sub-indexes: the Energy System Performance sub-index, which evaluates the current status of cities' energy systems in terms of energy transition, and the Transition Readiness sub-index, which assesses their socioeconomic capacity for future energy transition. The Energy System Performance sub-index includes two dimensions and seven components, while the Transition Readiness sub-index has four dimensions and eleven components. Each component consists of one or more indicators. The initial version of the dataset includes ETI and its sub-indexes for 282 Chinese cities from 2003 to 2019, with annual updates planned. The spatiotemporal data provided by the dataset facilitates research into the energy transition roadmap for different cities, which can help China achieve its energy transition goals.
DOI: 10.6084/m9.figshare.26141713.v1
title: The impact of land use on the acoustic behaviour of cicadas in the Chocó lowland tropical forest of Ecuador

description: Raw data and R code to reproduce the analyses in the manuscript: Gindhart et al: The impact of land use on the acoustic behaviour of cicadas in the Chocó lowland tropical forest of Ecuador
DOI: 10.6084/m9.figshare.4879940.v1
title: Grassland soil raw sequences fungal ITS

description: Fungal marker gene (ITS) sequences associated with Leff et al 2018, The ISME Journal.
DOI: 10.6084/m9.figshare.24534580.v1
title: <b>Genome integrity maintaining variants</b><b> related to ionizing radiation resistance in the Lithuanian Chornobyl clean-up workers cohort</b>_Set of the six sub-groups of genes

description: Study sample consisted of 40 male LCCWs. Two individuals with a history of cancer were removed from our research, ending up with a total of 38 individuals. Data was collected roughly 34 years after the Chornobyl nuclear disaster (in 2019-2020). The age variation of LCWCs was between 50–78 years. Whole-genome sequencing (WGS) and quality control were performed using the Illumina NovaSeq 6000 (Illumina, San Diego, CA, USA) sequencing system and standard DRAGEN version 3.6.4 workflow (the Centre for Genomics and Transcriptomics (CeGaT), Germany). Sequencing was performed at coverage of 26.88–61.38× (an average of 36.27×) per both sample groups. Raw sequencing data (.fastq files) quality was analyzed with FastQC (version 0.11.5-cegat), Q30 values were above 88.59%. Gene-set variation data was extracted by filtering out DNA sequences of the LCCWs according to the particular genomic positions. For each of the analyzed genetic variants quality control steps were: Hardy–Weinberg equilibrium (HWE) (0.001), minor allele frequency (MAF) (0.01), and duplicated variants removal using PLINK v1.9 software (Purcell et al., 2007).
DOI: 10.6084/m9.figshare.28677833.v1
title: unicorn data collection from linkedin with liwc data_March 2025

description: Collected LinkedIn Posts from 9 unicorn ventures 1 year prior to unicorn date to 1 year after unicorn date. Conducted LIWC analysis
DOI: 10.6084/m9.figshare.1463381
title: Discovering object affordances through vision and haptics

description: Audiovisual, audio, and text files of Experiment 3 of the "A multimodal dataset of spontaneous speech and movement production on object affordances."
DOI: 10.6084/m9.figshare.25116941.v3
title: Enhanced effects of species richness on resistance and resilience of global tree growth to prolonged drought.

description: Raw datasets and R codes, which are used in the paper "In global forests, how species diversity affects the resistance and resilience of trees under short-term and persistent droughts".The datasets include:<br>raw data of tree-ring widths from https://www1.ncdc.noaa.gov/pub/data/paleo/treering/; the global patterns of vascular plant alpha diversity from https://doi.org/10.1038/s41467-022-32063-z; the gridded SPEI data (SPEIbase v2.9) from https://digital.csic.es/handle/10261/332007; the Climatic Research Unit (CRU), version TS 4.07 from https://crudata.uea.ac.uk/cru/data/hrg/; the Regridded Harmonized World Soil Database v1.2 from https://daac.ornl.gov/SOILS/guides/HWSD.html; compound topographic index from https://doi.org/10.5285/6b0c4358-2bf3-4924-aa8f-793d468b92be; wood density from https://datadryad.org/handle/10255/dryad.235; SLA from https://github.com/abhirupdatta/global_maps_of_plant_traits.<br>Please cite the corresponding papers correctly and follow the data usage license when using these datasets.
DOI: 10.6084/m9.figshare.3850824.v1
title: Relationship between diameter at breast height, canopy cover, and tree location

description: <i>Methods</i> The study was performed at York University, Boyer Woodlot; Latitude: 43.773116, Longitude: -79.501118 from 3:00 PM – 3:45. This is a woodlot area, containing many species of trees, varying from areas of dense tree concentrations and areas of sparse tree concentrations. On the day of the study, the weather was sunny with an average temperature of 25 degrees Celsius, and a little bit of rain from 3:30 PM to 4:00PM. Two individuals used transect measuring tapes to measure the distance between adult trees and saplings of the same species. One person would hold one end of the transect measuring tape at the edge of the adult tree, while the other person would hold the other end of the transect measuring tape at the edge of the sapling, then report the measured distance.The species of trees used for the study were chosen at random. Adults of the chosen species ranged in diameter at breast height values of 0.10 m to 0.5 m. The saplings ranged in diameter at breast height values of 0.01 m to 0.03 m. The trees had thin branches with few leaves near the top of the tree. The trunk of the trees were brown and the trees were reddish in colour. Adult trees were classified as trees that were at least 6’ tall; saplings were classified as trees not meeting this minimum height requirement. This minimum height requirement was measured using the transect. A measuring tape was used to measure the diameter at breast height (DBH) of both the adult trees and the saplings. The same individual estimated the canopy coverage by making a square with their fingers then estimating how much sky they saw; the canopy coverage was reported as a percentage. The person collecting the canopy coverage data was 5’5 with a thumb length of 6 cm and an index finger length of 9 cm. <i>Hypothesis</i> To compete for resources, plants attempt to maximize height and surface area. This offers the advantage of enabling the trees to increase their acquisition of resources essential for survival, i.e., sunlight and water from rain. Trees that do not have this advantage of height and high surface area will be smaller than those who have the advantage. Thus, in a woodlot area, the trees that form the canopy coverage will be larger than the trees in the nearby surroundings, that are beneath the canopy coverage. <br> <i>Predictions:</i>1. The greater the canopy coverage value, the lower the DBH value of the sapling. 2. The greater the canopy coverage value, the higher the DBH value of the adult tree. 3. The greater the distance between the sapling and the adult tree of the same species, the greater the DBH value of the sapling.
DOI: 10.6084/m9.figshare.22080680.v2
title: Mapping File - Chalifour et al., PlosOne, Gut Microbiome Biogeography

description: Mapping file that corresponds to ASV table generated as part of Chalifour et al., PlosOne publication of biogeographic-driven changes in the <em>Oreohelix strigosa</em> gut microbiome.
DOI: 10.17632/scr83vh7vb
title: Derlin Dfm1 employs a chaperone-like function to resolve misfolded membrane protein stress

description: Protein aggregates are a common feature of diseased and aged cells. Membrane
proteins comprise a quarter of the proteome, and yet, it is not well understood how
aggregation of membrane proteins is regulated and what effects these aggregates can
have on cellular health. We have determined in yeast that the derlin Dfm1 is has a
chaperone-like activity that influences misfolded membrane protein aggregation. We
establish that this function of Dfm1 does not require recruitment of the ATPase Cdc48
and it is distinct from Dfm1’s previously identified function in dislocating misfolded
membrane proteins to the cytosol for degradation. Additionally, we assess the cellular
impacts of misfolded membrane proteins in the absence of Dfm1 and determine that
misfolded membrane proteins are toxic to cells in the absence of Dfm1 and cause
disruptions to proteasomal and ubiquitin homeostasis.
DOI: 10.25452/figshare.plus.18144266.v1
title: Skeleton data supporting "Functional movement screen dataset collected with two Azure Kinect depth sensors"

description: This is human 3D skeleton data files that is part of the dataset found in the collection at:https://doi.org/10.25452/figshare.plus.c.5774969 <br><br> This dataset supports the following publication: Xing, QJ., Shen, YY., Cao, R. et al. Functional movement screen dataset collected with two Azure Kinect depth sensors. Sci Data 9, 104 (2022). https://doi.org/10.1038/s41597-022-01188-7 <br> Collection Description: This presents a dataset for vision-based autonomous functional movement screen (FMS) collected from 45 human subjects of different ages (18-59 years old) executing the following movements: deep squat, hurdle step, in-line lunge, shoulder mobility, active straight raise, trunk stability push-up, and rotary stability. Specifically, shoulder mobility was performed only once by different subjects, while the other movements were repeated for three episodes each. Each episode was saved as one record and was annotated from 0 to 3 by three FMS experts. The main strength of our database is twofold. One is the multimodal data provided, including color images, depth images, and 3D human skeleton joints. The other is the multiview data collected from the two synchronized Azure Kinect sensors in front of and on the side of the subjects. Finally, three-dimensional trajectories, quaternions, and 2D pixel trajectories of 32 joints were recorded. Our dataset contains a total of 1812 recordings, with 3624 episodes. The size of the dataset is 158 GB. As a supplement, we also provide color image data from the other two cameras (back and side low positions). This dataset provides the opportunity for automatic action quality evaluation of FMS.
DOI: 10.17632/55ppzrk5hc
title: Dapagliflozin improves diabetic cognitive impairment via indirectly modulating the mitochondria homeostasis of brain hippocampus in diabetic mice

description: Background 
Cognitive impairment is increasingly recognized as an important comorbidity with diabetes progression. But the underlying molecular mechanism is not very clear. Dapagliflozin has been shown to promising effect on diabetes in rodent experiments and human clinical assays. This study aims to explore the effects of dapagliflozin on diabetic cognitive impairment and uncover the underlying mechanism. 
Methods: STZ-induced diabetic mice were utilized to construct diabetic cognitive impairment model in vivo. Dapagliflozin was administered to mice for 8 weeks via free drinking. Morris water maze test were used to evaluate the cognitive function of mice. Western blot were used to appraise protein expression. HE staining and Nissl staining were applied to observe the changes of morphological structure. Congo red staining was adopted for detecting Aβ/senile plaque formation. Mitochondrial morphology change was evaluated by transmission electron microscope, and the blood flow in the mouse cerebral cortex was appraised by Laser Doppler imaging assay individually. 
Results: After dapagliflozin treatment, compared with the Con group, the increased glycemic values and the downward body weight in the DM group were significant reversed by dapagliflozin. Behavioral assays showed that the spatial learning memory ability in diabetes mice were decrease. Fortunately, it was significantly improved after administrating with dapagliflozin. HE staining and Nissl staining showed that the number of neurons was reduced, disordered neurons were increased, the cell membrane edge was blurry and the Nissl bodies were difficult to identify in DM group, but remarkably relieved by dapagliflozin treatment. Meanwhile, increased Aβ/senile plaque and reduced cerebral blood flow in DM group was inhibited by dapagliflozin treatment. Moreover, the expressions of APP processing-related proteins and mitochondrial dynamic-related proteins in diabetic mouse hippocampus were rectified after dapagliflozin treatment. Incredibly, there was less SGLT2 in the hippocampus and cortex of diabetic mice than that of the Con group, but the SGLT2 inhibitor dapagliflozin increased significantly after several weeks of continuous administration.
Conclusion: Diabetes-induced cognitive dysfunction was attenuated by dapagliflozin and the effect was indirect rather than direct. This may be the result of modulation of peripheral glycemic levels affecting the homeostasis of hippocampal mitochondria in diabetic mice.
DOI: 10.17632/96krfw4325
title: Exact analytical expressions and numerical analysis of two-center Franck–Condon factors and matrix elements over displaced harmonic oscillator wave functions

description: Abstract A detailed study is undertaken, using various techniques, in deriving analytical formula of Franck-Condon overlap integrals and matrix elements of various functions of power (x^l ), exponential (exp (- 2 c x)) and Gaussian (exp (- c x^2 )) over displaced harmonic oscillator wave functions with arbitrary frequencies. The results suggested by previous experience with various algorithms are presented in mathematically compact form and consist of generalization. The relationships obtained are val... Title of program: FRANCK (Franck-Condon factors and matrix elements programs) Catalogue Id: ADXX_v1_0 Nature of problem The programs calculate the Franck-Condon factors and matrix elements over displaced harmonic oscillator wave functions with arbitrary quantum numbers (n, n1), frequencies (a, a1) and displacement (d) for the various functions of power (x l ), exponential (exp(-2cx)) and Gaussian (exp(-cx 2 )). Versions of this program held in the CPC repository in Mendeley Data ADXX_v1_0; FRANCK (Franck-Condon factors and matrix elements programs); 10.1016/j.cpc.2006.04.002 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.26911195.v1
title: Data for Peltier, Anzai, Moreno-Bote, and DeAngelis, Current Biology, 2024

description: Data for Peltier, Anzai, Moreno-Bote, and DeAngelis, Current Biology, 2024Descriptions of file formats can be found in each subfolder
DOI: 10.6084/m9.figshare.28408292.v1
title: Encuestas de motivación y utilidad para el aprendizaje basado en retos reales. Tabla 1 - Encuesta estudiantes universitarios

description: Encuestas para los Estudiantes universitarios del estudio "Implementación del aprendizaje basado en retos reales en la docéncia universitária" - "Encuestas de motivación y utilidad para el aprendizaje basado en retos reales"El objetivo del estudio fue crear, validar y demostrar la fiabilidad de encuestas que valorasen la motivación, la percepción del aprendizaje y de la utilidad de la metodología del aprendizaje basado en retos reales (ABRR) tras su la aplicación en el grado universitario de Ciencias de la Actividad Física y el Deporte. Los retos reales los propusieron centros educativos y fueron resueltos e implementados por estudiantes universitarios. La validación la realizaron doce expertos y para establecer su fiabilidad se realizaron test-retests a los estudiantes universitarios y al profesorado de los centros educativos aplicando la comparación estadística χ2 de Pearson por preguntas y temas. Los resultados de la validación fueron tres encuestas: para los estudiantes universitarios (18 preguntas), para el profesorado de escuelas e institutos (28 preguntas) y para su alumnado (16 preguntas). Todas fueron conformadas por preguntas tipo likert y abiertas. Los resultados del χ2 mostraron buena fiabilidad (p ≥ 0,05). El estudio demostró su validez con relación al contenido y estructura, así como buena fiabilidad para analizar la motivación, la percepción del aprendizaje y la utilidad del ABRR desde la perspectiva de los estudiantes universitarios, los docentes de los centros educativos y su alumnado. Puesto que mostraron rigurosidad suficiente, permitían obtener datos de los diferentes agentes implicados en el proceso y la posibilidad utilizarlas para analizar otras materias en que se aplicara esta metodología u otras metodologías activas.
DOI: 10.17632/jhf57r7rnn
title: Capital Connectivity in Integrated Reports: Datasets from International Companies

description: The panel dataset provides information on the degree of capital connectivity disclosed in 840 integrated reports from 80 Asia-Australian, 78 European, and 10 American firms over a five-year period from 2018 to 2022. The sample includes firms from eleven different sectors, as defined by the Global Industry Classification Standards (GICS). The dataset focuses on international firms that voluntarily adopt integrated reporting, with these reports available in the official IR database. 

Data extraction is performed using a robotic software, which systematically codes the quantity and sequence of specific capitals in the reports. The software uses a list of keywords related to the six capitals outlined in the IR Framework: Financial, Manufactured, Intellectual, Human, Social & Relationship, and Natural. A self-calculated connectivity score is then generated to assess firms’ capital connectivity, by counting the average number of different types of capital coded within a specific context in each integrated report. This score ranges from a minimum of one (1) and a maximum of six (6), reflecting the average number of different types of capital codes. Additional scoring is calculated based on the percentage of capital disclosed directly, followed by another capital. The perfect score of 100% indicates that a different capital follows every other capital disclosure, while the lowest possible score of zero means none. Please refer to the excel file for detailed scoring measurement. 

Experts from industries and academicians have validated the instrument used to measure capital connectivity. To assess the reliability of the connectivity score, ten (10) integrated reports were randomly selected and manually coded, and the score was calculated based on the manual coding. Weighted Cohen’s Kappa inter-rater reliability test was used to compare Connectivity Score (CS) 1 and 2 using manual and automated coding. A coefficient of .99 (CS1) and .94 (CS2) indicates almost perfect agreement between manual and automated coding. In addition, a Pearson correlation is used to compare the manual and automated coding for Connectivity Score 3. A coefficient of .90 (CS3) shows that the manual score is statistically related with automated score at a .01 level of significance. This suggests that the scores calculated using robotic software is reliable.

The dataset is a valuable indicator of how committed IR adopters are to achieving connectivity, reflecting the integrative thinking involved in producing the integrated report.
DOI: 10.6084/m9.figshare.24998825.v1
title: Big Data Set and Animated GIF

description: Project data for manuscript entitled "Navigating Industry 4.0 through Automated Control Charts as a Diagnostic Tool using a Rule-Based Algorithm: A Case Study in Semiconductor Manufacturing Company submitted to Pertanika Journal of Science & Technology.1) Raw dataset and animated GIF (BigData_PackageY),2) Excel Dashboard (ExcelDashboard_PackageY),3) JSL Script in .txt (ScriptDAAVIDieDefective_15012024)4) JMP Journal Report in .pdf (PACKAGEY_DIE_DA)5) SUPPLEMENTARY DATA (Appendices)