cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24891870
title: Predicting the Structural Impact of Human Alternative Splicing (AF2 predicted alternative splicing isoform structures)

description: AlphaFold2 structures for references and spliced isoforms from paper "Song Y, Zhang C, Omenn GS, O'Meara MJ, Welch JD. Predicting the Structural Impact of Human Alternative Splicing." We used AlphaFold2 predicted structures of 5,966 reference and 11,159 isoform structures.
DOI: 10.6084/m9.figshare.24891870.v3
title: Predicting the Structural Impact of Human Alternative Splicing (AF2 predicted alternative splicing isoform structures)

description: AlphaFold2 structures for references and spliced isoforms from paper "Song Y, Zhang C, Omenn GS, O'Meara MJ, Welch JD. Predicting the Structural Impact of Human Alternative Splicing." We used AlphaFold2 predicted structures of 5,966 reference and 11,159 isoform structures.
DOI: 10.6084/m9.figshare.24891870.v2
title: Predicting the Structural Impact of Human Alternative Splicing (AF2_model.zip)

description: AlphaFold2 structures for references and spliced isoforms.
DOI: 10.15468/dl.areb45
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chlorocichla prigoginei)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087829-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cevjka
title: Occurrence Download

description: A dataset containing 4057 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chlorodrepanis flava)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 4057 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087830-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zuqpk8
title: Occurrence Download

description: A dataset containing 3444 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-103.41501 20.72044,-103.4126 20.71721,-103.41183 20.71793,-103.40682 20.71694,-103.40351 20.71914,-103.40476 20.7203,-103.40557 20.71999,-103.40642 20.71923,-103.40807 20.72008,-103.40794 20.72088,-103.41031 20.72214,-103.41027 20.72384,-103.41098 20.7238,-103.41107 20.72232,-103.41246 20.72151,-103.41291 20.72254,-103.41331 20.722,-103.41322 20.72133,-103.41501 20.72044))",
 "Year 2015-2025"
 ]
}

 The dataset includes 3444 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087831-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m89562
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna pendula",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087833-250717081556266/datasets/export for details.
DOI: 10.15468/dl.emhexy
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna pendula",
 "Country is Eswatini",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087832-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68f9fa
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna pendula",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 124 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087834-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j2n8ra
title: Occurrence Download

description: A dataset containing 160245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ARG.1.63_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 160245 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087759-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.649jky
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-104.14912 19.13641,-104.06983 19.14608,-104.07045 19.13079,-104.082 19.12517,-104.11665 19.10332,-104.13101 19.07179,-104.04361 19.08022,-104.02238 19.14078,-103.95933 19.12205,-103.94934 19.14483,-103.93529 19.1748,-103.9356 19.21413,-103.95465 19.23348,-103.9765 19.23099,-103.9921 19.2082,-104.0639 19.19228,-104.14912 19.13641))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 782 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087835-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.437xvc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Datura metel",
 "Country is Zambia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087840-250717081556266/datasets/export for details.
DOI: 10.15468/dl.djcdxt
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Fagus orientalis"
 ]
}

 The dataset includes 109 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087836-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.288pxh
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Italy",
 "Geometry POLYGON((-7.66277 36.24421,28.66277 36.24421,28.66277 50.75579,-7.66277 50.75579,-7.66277 36.24421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chondrostoma soetta",
 "Year 1970-2020"
 ]
}

 The dataset includes 257 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087839-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4qwqk
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Datura metel",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087838-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kjz3v
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Doryichthys deokhatoides)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087837-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5s4jf
title: Occurrence Download

description: A dataset containing 2312126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "GadmGid is ARG.1_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2312126 records from 519 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087756-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7mbcr
title: Occurrence Download

description: A dataset containing 50292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chlorocichla flaviventris)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 50292 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087811-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/z95f-g888
title: "Random benchmarking on variation quantum teleportation protocol"

description: "This dataset contains comprehensive experimental results from quantum circuit executions performed on IBM Quantum hardware, specifically targeting the evaluation of quantum teleportation protocol performance under varying circuit complexities and payload sizes.Dataset DetailsFile: 3_experiment_results.csvTotal Records: 292 experimental runsData Collection Period: May 1, 2025Quantum Backend: IBM Sherbrooke quantum processorExperimental DesignThe dataset encompasses two distinct experimental protocols:Fixed Payload Experiments (161 records)Systematic evaluation of quantum circuits with payload sizes ranging from 1-10 qubitsCircuit depths varying from 11 - 43 layersFocus on understanding payload size impact on teleportation fidelityTarget Depth Experiments (131 records)Controlled studies targeting specific circuit depthsEvaluation of depth-dependent quantum coherence effectsCircuit complexity analysis with varying gate compositionsKey Measured ParametersCircuit Characteristics:circuit_depth: Number of quantum gate layers (range: 8-43)circuit_width: Number of qubits used (range: 4-13)circuit_size: Total number of operations (range: 13-181)payload_size: Number of qubits in teleported state (range: 1-5)circuit_count_ops: Detailed gate composition (H, CNOT, X, Y, Z, S, S\u2020, CZ gates)Performance Metrics:success_rate: Quantum teleportation fidelity (range: 0.024-0.874)job_execution_duration: Hardware execution timecounts: Complete measurement outcome histogramsHardware Metadata:IBM job IDs for result reproducibilityExecution timestamps and durationsBackend-specific calibration flagsResearch ApplicationsThis dataset enables investigation of:Quantum Error Scaling: How decoherence affects multi-qubit teleportationCircuit Optimization: Identifying optimal depth-payload trade-offsHardware Characterization: IBM quantum processor performance profilingProtocol Validation: Quantum communication protocol benchmarkingData Quality and ReproducibilityComplete Provenance: All experiments include IBM job IDs for independent verificationHardware Timestamps: Precise execution timing for temporal analysisError Handling: All experiments completed successfully with full measurement dataStatistical Rigor: Multiple validation approaches and diagnostic testingTechnical SpecificationsData Format: CSV with JSON-encoded measurement dictionariesHardware Platform: IBM Quantum Network, Sherbrooke backendMeasurement Protocol: Full computational basis measurement with 4096 shots per circuitThis dataset provides a comprehensive foundation for quantum computing research, particularly in quantum communication protocols, error characterization, and hardware performance analysis. The accompanying analysis scripts offer immediate access to publication-quality visualizations and statistical models, making this dataset suitable for both fundamental research and practical quantum system optimization studies."
DOI: 10.5281/zenodo.15399429
title: Swallow and martin roosts detected by a weather radar in Manaus, AM (Brazil) from 2014 to 2015

description: This repository contains materials that support the paper "From spurious interference to biological signal: repurposing weather radars to monitor and study the Amazonian avifauna" published on Ecology and Evolution (vol 15, issue 8) with authors Maria C. T. D. Belotti, Victória de Souze Wojahn, Carlos Augusto Morales Rodriguez, and Kyle G. Horton.

The zip file main_dataset contains georeferenced bounding boxes drawn around swallow and martin roosts dispersals detected by an operational weather radar in Manaus, AM (3°8′56.0′′ S, 59°59′29.1′′ W) from 2014 to 2015. 

The two R scripts analysis.R and aux_func.R can be used to reproduce the analysis and figures in the paper, using the shapefile provided in this repository. 

The scripts contained in radar_processing.zip were developed to download, render, georeference and estimate the size of each roost. These are the scripts that define our radar processing methodology. They rely on pyart 2.01 to open volumetric data files using the GAMIC standard (function pyart.aux_io.read_gamic).
DOI: 10.5281/zenodo.15399430
title: Swallow and martin roosts detected by a weather radar in Manaus, AM (Brazil) from 2014 to 2015

description: This repository contains materials that support the paper "From spurious interference to biological signal: repurposing weather radars to monitor and study the Amazonian avifauna" published on Ecology and Evolution (vol 15, issue 8) with authors Maria C. T. D. Belotti, Victória de Souze Wojahn, Carlos Augusto Morales Rodriguez, and Kyle G. Horton.

The zip file main_dataset contains georeferenced bounding boxes drawn around swallow and martin roosts dispersals detected by an operational weather radar in Manaus, AM (3°8′56.0′′ S, 59°59′29.1′′ W) from 2014 to 2015. 

The two R scripts analysis.R and aux_func.R can be used to reproduce the analysis and figures in the paper, using the shapefile provided in this repository. 

The scripts contained in radar_processing.zip were developed to download, render, georeference and estimate the size of each roost. These are the scripts that define our radar processing methodology. They rely on pyart 2.01 to open volumetric data files using the GAMIC standard (function pyart.aux_io.read_gamic).
DOI: 10.15468/dl.bubvep
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Turnera ulmifolia",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 41 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087841-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wbhfs
title: Occurrence Download

description: A dataset containing 508 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna pendula",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 508 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087845-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89eng2
title: Occurrence Download

description: A dataset containing 41499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chlorodrepanis virens)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 41499 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087842-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29802932
title: Spatial transcriptomic profiling using Xenium platform

description: The analysis_summary.html files are generated by the Xenium Onboard Analysis pipeline. Information about these files can be found on the 10X Genomics website.
DOI: 10.6084/m9.figshare.29802932.v1
title: Spatial transcriptomic profiling using Xenium platform

description: The analysis_summary.html files are generated by the Xenium Onboard Analysis pipeline. Information about these files can be found on the 10X Genomics website.
DOI: 10.15468/dl.4zqhrc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Physalis philadelphica",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087846-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njn7jq
title: Occurrence Download

description: A dataset containing 307 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ammocrypta bifascia)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 307 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087847-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bf7puj
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Rhipsalis burchellii"
 ]
}

 The dataset includes 182 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087848-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9g8hfk
title: Occurrence Download

description: A dataset containing 3232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chlorodrepanis stejnegeri)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 3232 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087849-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gsghy2
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Epinephelus marginatus",
 "Year 1970-2020"
 ]
}

 The dataset includes 153 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087850-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5fcr5x
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotaphytus silus"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087851-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ce5ggh
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abelmoschus moschatus",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087853-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ryf8eh
title: Occurrence Download

description: A dataset containing 3590 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chlorophoneus bocagei)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 3590 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087854-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5h35be
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abelmoschus moschatus",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087852-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt9bwc
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tephrosia purpurea",
 "Country is Eswatini",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087855-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgbtc4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthophora spicifera",
 "Country is Angola",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087856-250717081556266/datasets/export for details.
DOI: 10.15468/dl.rvd4y8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthophora spicifera",
 "Country is Cameroon",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087857-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.