cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.qj3hn/1
title: Microsatellite allele information for sporophytes and gametophytes

description: The Excel document contains all of the information used in the microsatellite analysis of both haploid gametophytes and diploid sporophytes in the Hell Hole Swamp of South Carolina. For sporophytes, size (diameter in µm) and identity of the haploid maternal parent are recorded. Microsatellite loci names are following Shaw et al. 2008 and Johnson et al. 2015. The collection month and neighborhood within the Hell Hole Swamp site is indicated for samples collected in December 2009 - June 2010. Samples without date collection information were collected in May, 2009, and do not have neighborhood information. For gametophytes (male, female, and sterile), the Clone represents ID of a multilocus genotype. For Sporophytes, Clone represents the inferred paternal multilocus genotype. MomClone indicates the haploid maternal multilocus genotype for the maternal gametophyte of the genotype. Samples with a "YES" in the ambiguous column could not be unambiguously assigned to a Clone and were discarded from further analysis.
DOI: 10.5061/dryad.0015b/1
title: Female Annual Reproductive Success Data

description: This file contains data required for the analyses of female annual reproductive success in relation to the female's mean kinship with the socially-paired males with which she made each breeding attempt across her lifetime.This analysis is presented in the paper's Supporting Information.
DOI: 10.5061/dryad.0015b/2
title: Female Kinship Data

description: This file contains the raw data underlying the calculation of each female's mean kinship with the socially-paired males with which she made each breeding attempt.
DOI: 10.5061/dryad.162mh/10
title: L10 VCF - scaffold 3 to 7

description: The L10_vcf_scaffold_3_to_7.tar.gz folder contains the compressed all-sites VCF file for L10 and the index file for that VCF file. This file contains scaffold 3 to 7. The all-sites VCF file was generated using GATK UnifiedGenotyper, as described in the paper.
DOI: 10.5061/dryad.162mh/11
title: indel_vcf.tar

description: The indel_vcf.tar.gz folder contains the filtered indel VCF files produced by GATK using the tool UnifiedGenotyper. There is a  VCF file for each lineage (L1, L4, L5, L7, L8, L9 and L10). The VCF files are named according to the Lineages (e.g., the VCF file called L5_filtered_indel_final.recode.vcf contains the indels for L5)
DOI: 10.5061/dryad.162mh/12
title: N. tetrasperma consensus sequences

description: The consensus_sequences folder contains the consensus sequences for 92 strains of N. tetrasperma, in fasta format, generated from the all-sites vcf files, as described in the paper . Each file contains the consensus sequence for the seven largest scaffolds in the reference 2509 mat a genome and coordinates follow the 2509 reference genome. Each file is named using the homokaryon id listed in Supplementary Table 1 of the paper. The consensus sequences have had repetitive regions masked to 'N'.
DOI: 10.5061/dryad.162mh/4
title: L5 VCF - scaffold 3 to 7

description: The L5_vcf_scaffold_3_to_7.tar.gz folder contains the compressed all-sites VCF file for L5 and the index file for that VCF file. This file contains scaffold 3 to 7. The all-sites VCF file was generated using GATK UnifiedGenotyper, as described in the paper.
DOI: 10.5061/dryad.162mh/5
title: L7 VCF

description: The L7_vcf.tar.gz folder contains the compressed all-sites VCF file for L7 and the index file for that VCF file. The all-sites VCF file was generated using GATK UnifiedGenotyper, as described in the paper.
DOI: 10.5061/dryad.162mh/6
title: L8 VCF - scaffold 1 and 2

description: The L8_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L8 and the index file for that VCF file. This file contains scaffold 1 and 2. The all-sites VCF file was generated using GATK UnifiedGenotyper, as described in the paper.
DOI: 10.5061/dryad.162mh/7
title: L8 VCF - scaffold 3 to 7

description: The L8_vcf_scaffold_3_to_7.tar.gz folder contains the compressed all-sites VCF file for L8 and the index file for that VCF file. This file contains scaffold 3 to 7. The all-sites VCF file was generated using GATK UnifiedGenotyper, as described in the paper.
DOI: 10.5061/dryad.162mh/8
title: L9 VCF

description: The L9_vcf.tar.gz folder contains the compressed all-sites VCF file for L9 and the index file for that VCF file. The all-sites VCF file was generated using GATK UnifiedGenotyper, as described in the paper.
DOI: 10.5061/dryad.162mh/9
title: L10 VCF - scaffold 1 and 2

description: The L10_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L10 and the index file for that VCF file. This file contains scaffold 1 and 2. The all-sites VCF file was generated using GATK UnifiedGenotyper, as described in the paper.
DOI: 10.5061/dryad.48h1q/10
title: AKRW-RevisedDryadFig7

description: FIG. 7. Phylogenies for Tremadocian through Darriwilian and three Sandbian and Katian disparids. All results from PAUP 4.0a142; all analyses resulted from heuristic search with random addition and 1000 repetitions. A, tree in Ausich et al. (in press, Fig. 2B) with three Sandbian disparids included, strict consensus of 28 trees, tree length 457, CI=0.481, RI=0.574, RC=0.276; B, 50% majority-rule tree of Fig 7A.
DOI: 10.5061/dryad.48h1q/11
title: AKRW-RevisedDryadFig8

description: FIG. 8. Phylogenies for Tremadocian through Darriwilian crinoids coded with lintels (as in Ausich, 1996, 1998a, 1998b). All results from PAUP 4.0a142; all analyses resulted from heuristic search with random addition and 1000 repetitions. A, tree in Ausich et al. (in press, Fig. 3B) with lintel coding, strict consensus of 50 trees, tree length 515, CI=0.431, RI=0.586, RC=0.253; B, 50% majority-rule tree of Fig. 8A.
DOI: 10.5061/dryad.48h1q/12
title: AKRW-RevisedDryadFig9

description: FIG. 9. Phylogenies for Tremadocian through Darriwilian crinoids with all taxa used in Ausich et al. (in press, Fig. 2B) plus Merocrinus coded as a cladid. All results from PAUP 4.0a142; all analyses resulted from heuristic search with random addition and 1000 repetitions. A, strict consensus of 156 most-parsimonious trees, tree length 423, CI=0.475, RI=0.572, RC=0.272; B, 50% majority-rule tree of Fig. 9A.
DOI: 10.5061/dryad.48h1q/13
title: AKRW-RevisedDryadFig10

description: FIG. 10. Phylogenies for Tremadocian through Darriwilian crinoids with all taxa used in Ausich et al. (in press, Fig. 2B) plus Merocrinus coded as a disparid. All results from PAUP 4.0a142; all analyses resulted from heuristic search with random addition and 1000 repetitions. A, strict consensus tree of 48 most-parsimonious trees, tree length 423, CI=0.475, RI=0.571, RC=0.272; B, 50% majority-rule tree of Fig. 10A.
DOI: 10.5061/dryad.48h1q/9
title: AKRW-RevisedDryadFig6

description: FIG. 6. Phylogram of tree in Ausich et al. (in press, Fig. 3A).
DOI: 10.5061/dryad.51j0j/1
title: FileS1_AgeData

description: Supplemental Data 1. Microsoft Excel file containing age data from U/Pb detritral zircon dating. Two samples were analyzed: SONO–MS from a site near the quarry, which yielded a youngest single–grain age of 149.3 +/– 4 Ma and SONO–CA from the Sonorasaurus holotype quarry, which yielded a youngest single–grain age of 129.2 +/– 9.9 Ma.
DOI: 10.5061/dryad.51j0j/2
title: FileS2_DorsalRib

description: Supplemental Data 2. Dorsal rib of a titanosauriform sauropod dinosaur (ASDM 807) in posterior view, found in the ‘middle’ Cretaceous Turney Ranch Formation approximately 0.6 km from the holotypic Sonorasaurus quarry, Arizona, USA. Cross sections along the shaft are indicated.
DOI: 10.5061/dryad.51j0j/3
title: FileS3_maxilla

description: Supplemental Data 3. Skin of exterior bone belonging to a sauropod maxilla from the Turney Ranch Formation.
DOI: 10.5061/dryad.51j0j/4
title: FileS4_TheropodFemur

description: Supplemental Data 4. Theropod femur (ASDM 2111) found in the ‘middle’ Cretaceous Turney Ranch Formation approximately 300 m from the holotypic Sonorasaurus quarry, Arizona, USA: 1, medial; 2, posterior; 3, lateral; 4, anterior views. Abbreviation: ftr=fourth trochanter.
DOI: 10.5061/dryad.51j0j/5
title: File S5 Sonorasaurus matrix

description: Supplemental Data 5. Nexus file containing character-taxon matrix used in the cladistic analysis.
DOI: 10.5061/dryad.53mv1/41
title: S2-Figure3A_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 3A
DOI: 10.5061/dryad.53mv1/42
title: S2-Figure3B_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 3B
DOI: 10.5061/dryad.53mv1/43
title: S2-Figure3C_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 3C
DOI: 10.5061/dryad.53mv1/44
title: S2-Figure3D_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 3D
DOI: 10.5061/dryad.53mv1/45
title: S2-Figure3E_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 3E
DOI: 10.5061/dryad.53mv1/46
title: S2-Figure3F_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 3F
DOI: 10.5061/dryad.53mv1/47
title: S2-Figure3G_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 3G
DOI: 10.5061/dryad.53mv1/49
title: S2-Figure4A_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 4A
DOI: 10.5061/dryad.5b64r.2
title: Data from: Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta)
DOI: 10.5061/dryad.5g5rp/1
title: DRYAD files

description: Zip folder containing phenotypic data from 2011 field experiment, genotypic data for parents and offspring at 8 microsatellite markers, and data used in path analysis (some of which was generated through paternity analysis). Also includes two R scripts for running paternity analysis.
DOI: 10.5061/dryad.5kv72/1
title: Supplemental Data Table. Fossil occurrence data within the Chuar Group

description: Lists sample names, their stratigraphic height, and the species, if any, that occur in each sample. Figure 2 in Porter and Riedman is based on these data.
DOI: 10.5061/dryad.6782r/1
title: ECE-2015-07-00379 Dryad Data

description: The data contained in this file come from a much larger database curated by the Soay sheep project. If you are interested in using the data we strongly recommend you contact us, as we most likely have additional data that could be useful to you and can assist with interpretation of results based on the biology of the system. Note that the individual identity codes in this file have been re-coded and will not correspond with those in other data files from the Soay sheep project which you may find in data repositories. Please contact Dan Nussey (dan.nussey@ed.ac.uk) if you think you would be interested in using the data.
DOI: 10.5061/dryad.9rn92/1
title: Tornqvist_et al_human & dog data_2015
DOI: 10.5061/dryad.b6vh6/1
title: Simulation Scripts and Results

description: Simulation parameter files, scripts, and results. Each directory pertains to a separate simulation run. The directories are numerically ordered according to their respective simulation run's presentation in the paper. Each directory is named according to its specific simulation run or section in the Supporting Materials. Within each directory is a "Description" file that lists the scripts used and the parameterizations utilized.
DOI: 10.5061/dryad.b6vh6/2
title: Stickleback Data

description: Stickleback RAD-seq data bioinformatics scripts and files. Data files include sorted raw reads, reference genome, alignment files, stacks outputs, intermediate files between stacks outputs and per-population SFSs, and SFSs.
DOI: 10.5061/dryad.dv920/20
title: Upstream soil (minimum)
DOI: 10.5061/dryad.dv920/21
title: Upstream soil (maximum)
DOI: 10.5061/dryad.dv920/22
title: Upstream soil (range)
DOI: 10.5061/dryad.dv920/23
title: Upstream soil (average)
DOI: 10.5061/dryad.dv920/24
title: Upstream soil (weighted average)
DOI: 10.5061/dryad.fg7g4/1
title: GouldianFinchMapping

description: Data and scripts used in genetic mapping of the Gouldian finch Z chromosome and the Red locus.
DOI: 10.5061/dryad.fg7g4/2
title: CriMaker_version1.1

description: CriMaker version1.1: a perl program to make input files for CRI-MAP and check genotype errors.
DOI: 10.5061/dryad.g02n5/1
title: AllDataforPhylogeny04

description: Five locus concatenated DNA matrix used for phylogenetic analyses
DOI: 10.5061/dryad.g02n5/2
title: TreesForComparativeAnalyses_02

description: Trees and data used for comparative analyses
DOI: 10.5061/dryad.g02n5/3
title: Barcodes

description: DNA barcodes and barcoding tree
DOI: 10.5061/dryad.g61d1/1
title: Shape variation across lakes

description: This file contains basic biometric data (length, weight, sex, maturity) and raw shape data (partial warps, uniform components, and relative warps) for R. argentea collected from Ugandan lakes in 2010.
DOI: 10.5061/dryad.g61d1/2
title: Shape variation across time

description: This file contains basic biometric data (length) and raw shape data (partial warps, uniform components, and relative warps) for R. argentea collected from Lake Victoria from 1966 to 2010.
DOI: 10.5061/dryad.gh208/1
title: RSOS_Grayson_2015

description: Zip archive containing trees, alignments and supplementary figures.
DOI: 10.5061/dryad.h3b27/1
title: Demographics

description: This file contains participant characteristics and demographics
DOI: 10.5061/dryad.h3b27/2
title: Muscle_Architecture

description: This file contains data of muscle volume (estimated using MRI), fascicle length (estimated using 3-D ultrasound) and PCSA (calculated from muscle volume and fascicle length)
DOI: 10.5061/dryad.h3b27/3
title: Neural_Drive

description: This file contains data of EMG RMS values measured during the isometric knee extension tasks and normalized to that measured during isometric maximal knee extension.
DOI: 10.5061/dryad.h3b27/4
title: Torque_and_VA

description: This file contains data measured during the maximal voluntray isometric knee extensions.
DOI: 10.5061/dryad.h3b27/5
title: Correlation

description: This file contains the data used to calculate the coefficient of correlation between the ratio of neural drive and the ratio of muscle force-generating capacity between the vastus lateralis (VL) and vastus medialis (VM) muscles
DOI: 10.5061/dryad.jh7h4/4
title: RAD43_ATCACG_75.fastq

description: Raw fastq data file containing sequence reads for L. borealis.
DOI: 10.5061/dryad.jh7h4/5
title: RAD70_75.fastq

description: Raw fastq data file containing sequence reads for L. cinereus.
DOI: 10.5061/dryad.jh7h4/6
title: RAD53A_75.fastq

description: Raw fastq data file containing sequence reads for L. cinereus
DOI: 10.5061/dryad.jh7h4/7
title: RAD44.fastq

description: Raw fastq data file containing sequence reads for L. noctivagans.
DOI: 10.5061/dryad.jh7h4/8
title: RAD43_GATCAC_75_Part_1of2

description: Raw fastq file containing sequence reads for L. borealis - (1 of 2).  Original file was split into two files for upload to Dryad. Use 'cat' function to concatenate the two files before analyzing.
DOI: 10.5061/dryad.jh7h4/9
title: RAD43_GATCAC_75_2of2

description: Raw fastq file containing sequence reads for L. borealis - (2 of 2). Original file was split into two files for upload to Dryad. Use 'cat' function to concatenate the two files before analyzing.
DOI: 10.5061/dryad.jr77n.2
title: Data from: Bet-hedging as a mechanism for the evolution of polyandry, revisited
DOI: 10.5061/dryad.jr77n.2/1.2
title: Yasui and Garcia-Gonzalez polyandry bet-hedging raw data

description: All simulation results described in the paper
DOI: 10.5061/dryad.nr63f/1
title: Genotype Data

description: This file contains the microsatellite genotypes for 421 workers at 4 loci, and the parentage assignments from Colony2.
DOI: 10.5061/dryad.p2b3b/1
title: Strucken_BMCEvolBiol_Korean_Cattle_geno

description: This readme file describes the genotypic data file of the above publication. For any further queries please contact cgondro2@une.edu.au.The file contains:Genotypic data for 3 Korean cattle breeds. Genotypes are coded as allele counts (0,1,2) and missing data as NA. Genotypes are quality controled as outlined in publication.Rows: SNP names from Illumina Bovine SNP 50K  Bead chip v1(Illumina, San Diego)Collumns: Cattle breed names (Hanwoo N=40, Jeju Black N=20, Chikso N=20)
DOI: 10.5061/dryad.q4c60/1
title: Kagawa and Takimoto 2015 source codes and data sets

description: This ZIP file contains Java source codes, R script, and Excel files for the individual-based simulation and analyses in our paper: Kagawa and Takimoto (2015) “Inaccurate Color Discrimination by Pollinators Promotes Evolution of Discrete Color Polymorphism in Food-deceptive Flowers”.
DOI: 10.5061/dryad.tc45g/1
title: Landscape resistance for the ovenbird

description: This is a 30m resolution landscape resistance raster for the ovenbird. It serves as the basis of network-based and circuit-based connectivity analyses. Resistance values increase from forest to non-vegetated pixels: forest pixels have a resistance of 1; open, vegetated pixels within 30 m of forest have a resistance of 14; remaining open, vegetated pixels have a resistance of 27; non-vegetated pixels have a resistance of 100.
DOI: 10.5061/dryad.tc45g/2
title: Habitat quality for the ovenbird

description: This is a 30m resolution habitat quality map for the ovenbird. See Appendix S2 for details.
DOI: 10.5061/dryad.0015b/3
title: Female Lifespan Data

description: This file contains data required for the analyses of female lifespan in relation to the female's mean kinship with the socially-paired males with which she made each breeding attempt across her lifetime.This analysis is presented in the paper's Supporting Information.
DOI: 10.5061/dryad.0015b/4
title: Female Lifetime Reproductive Success Data

description: This file contains data required for the analyses of female lifetime reproductive success in relation to the female's mean kinship with the socially-paired males with which she made each breeding attempt.
DOI: 10.5061/dryad.0015b/5
title: Male Annual Reproductive Success Data

description: This file contains data required for the analyses of male annual reproductive success in relation to the male's mean kinship with the socially-paired females with which he made each breeding attempt across his lifetime.This analysis is presented in the paper's Supporting Information.
DOI: 10.5061/dryad.0015b/6
title: Male Kinship Data

description: This file contains the raw data underlying the calculation of each male's mean kinship with the socially-paired females with which he made each breeding attempt.
DOI: 10.5061/dryad.0015b/7
title: Male Lifespan Data

description: This file contains data required for the analyses of male lifespan in relation to the male's mean kinship with the socially-paired females with which he made each breeding attempt across his lifetime.This analysis is presented in the paper's Supporting Information.
DOI: 10.5061/dryad.0015b/8
title: Male Lifetime Reproductive Success Data

description: This file contains data required for the analyses of male lifetime reproductive success in relation to the male's mean kinship with the socially-paired females with which he made each breeding attempt.
DOI: 10.5061/dryad.0sj1q/1
title: Digitized traces of wing and haltere tip in flying flies

description: These files contain two-dimensional coordinates for the tip and base of both the haltere and the wing in tethered flying flies.
DOI: 10.5061/dryad.0sj1q/2
title: Walking flies filmed with two cameras

description: These are two-dimensional coordinates of both halteres of walking flies as filmed with two cameras. The tip and base of each haltere is digitized, as well as the thorax (as a metric of body position) and one of the legs.
DOI: 10.5061/dryad.0sj1q/3
title: Perturbation videos
DOI: 10.5061/dryad.162mh/13
title: outgroup_alignment

description: The outgroup_alignment folder contains the alignment of the heterothallic species described in the paper in fasta format for each chromosome. The coordinates follow the 2509 N. tetrasperma mat a reference genome.
DOI: 10.5061/dryad.162mh/14
title: Fig5 alignments

description: The Fig5_alignments folder contains a fasta format alignment gene alignments of the 6 SR and 2 PAR genes listed in Supplementary Table 12 and used in the reconstruction of the Fig5 phylogenetic trees.
DOI: 10.5061/dryad.162mh/15
title: Het loci alignments Fig S8 and Fig S9

description: Fasta format mulitple sequence alignments for het-6 and het-c used to construct the phylogenetic trees for het-6 (Fig S8) and het-c (Fig S9).
DOI: 10.5061/dryad.2dv7r/1
title: Total blood slides examined for malaria  vs total slide positives during 2003-2013,Odisha(India)