cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7807928.v2
title: Biomedical Word Embeddings for Spanish: Development and Evaluation

description: Word embeddings are representations of words in a dense vector space. Although they are not recent phenomena in Natural Language Processing (NLP), they have gained momentum after the recent developments of neural methods and Word2Vec. Regarding their applications in medical and clinical NLP, they are invaluable resources when training in-domain named entity recognition systems, classifiers or taggers, for instance. Thus, the development of tailored word embeddings for medical NLP is of great interest. However, we identified a gap in the literature which we aim to fill in this paper: the availability of embeddings for medical NLP in Spanish, as well as a standardized form of intrinsic evaluation. Since most work has been done for English, some established datasets for intrinsic evaluation are already available. In this paper, we show the steps we employed to adapt such datasets for the first time to Spanish, of particular relevance due to the considerable volume of EHRs in this language, as well as the creation of in-domain medical word embeddings for the Spanish using the state-of-the-art FastText model. We performed intrinsic evaluation with our adapted datasets, as well as extrinsic evaluation with a named entity recognition systems using a baseline embedding of general-domain. Both experiments proved that our embeddings are suitable for use in medical NLP in the Spanish language, and are more accurate than general-domain ones.
DOI: 10.6084/m9.figshare.1100366.v1
title: (COMUNICAR) ID 28779_TABLA7

description: Tabla 7. Ítems factor relevancia
DOI: 10.6084/m9.figshare.14125976.v1
title: Using faecal metabarcoding to examine consumption of crop pests and beneficial arthropods by avian insectivores

description: Generalist insectivorous birds can provide ecosystem services in agricultural landscapes by consuming arthropod pests, or they can provide disservices when they consume beneficial arthropods. To examine bird impacts on arthropod communities, including pest control services, we need to know which arthropods birds commonly consume. Faecal metabarcoding is an emerging technique that can be used to identify prey from faecal samples, often to the species level. We used faecal metabarcoding to study bird diets in a largely agricultural landscape in Illinois, USA. While previous studies have used Faecal metabarcoding to compare bird diets among species or among capture sites, we analysed samples from multiple species within a community at replicate sites. We collected faecal samples during the summer of 2017 from birds that inhabit the ecotone between soybean fields and grasslands, and likely forage in both habitats. We collected and sequenced DNA from 132 faecal samples from 25 bird species captured at six sites.
DOI: 10.6084/m9.figshare.21107032.v2
title: Water use habits of residential users in Indian Urban Agglomeration.xlsx

description: The data set was created by collecting the information from residential users of Indian Urban agglomerations. The survey was conduted using the questionnaire supplied to users through a google form. Users were asked to provide the approximate answers to the questions in the survey.
DOI: 10.6084/m9.figshare.28617062.v1
title: ABMA study data and code

description: The data and code provided here are related to the following paper (currently submitted) :Walking towards the future – Exploring OpenTUG's validity in automatic walking activity analyses and the relationship with cognition in vestibular patients.<br>Vestibular disorders impair body orientation and spatial navigation, often causing cognitive and affective symptoms reducing quality of life. Traditional assessments involve time-consuming physiological and neuropsychological evaluations. This study investigates the feasibility and validity of applying a 2D human pose estimation (OpenTUG) to automatically analyse the walking activity of patients with vestibular disorders trough the Timed-Up & Go (TUG) task.Complementary, the relations between TUG and cognition are explored. Forty-eight patients undergoing treatment for vestibular disorders and 26 mean age-matched controls performed the TUG at normal, slow, and fast walking speeds; neuropsychological evaluations assessing attention (Test for Attentional Performance -TAP-) and quality-of-life questionnaires. Video-recorded TUG performances were analyzed manually and using OpenTUG, which automatically extracted gait parameters. Retrospective neuro-otological and postural data were also reviewed. Both manual and automated analyses showed similar results. Patients took significantly more time and steps to complete the TUG at normal and slow speeds. TUG measures significantly correlated between manual and OpenTUG evaluations for all participants. Patients reported significantly more physical and emotional complaints (DHI, HADS, and NVI-emotion) than controls, but showed no differences in objective neuropsychological tasks. Moderate significant correlations between TUG measures and several measures of postural testing and neuropsychological assessment were observed. These findings demonstrate the feasibility and validity of using OpenTUG to automatically extract clinically relevant gait parameters. The relationship between TUG performance and neuropsychological measures highlights the potential for integrating simple walking tasks with pose estimation as a rapid, cost-effective preliminary assessment of vestibular patient’s difficulties.<br><br>
DOI: 10.6084/m9.figshare.22310314.v1
title: Dark roads aid movement but increase mortality of a generalist herbivore in the American Southwest

description: The data provided here are the final datasets used as input in the primary models created for the manuscript “Dark roads aid movement but increase mortality of a generalist herbivore in the American Southwest”. These data were pre-processed as described in the manuscript. They include values derived from GPS-collared mule deer. GPS location data are owned by the Utah Division of Wildlife Resources. In Utah, mule deer are a legally protected species. As such, raw location data are considered proprietary and protected under state law. Data are not publically available except through a Government Records Access and Management Act request (GRAMA), under provisions stipulated by the Utah Division of Wildlife Resources (https://wildlife.utah.gov/grama.html). <br> Data files are provided as CSVs, which can be opened in a variety of programs, including Microsoft Excel, RStudio, or any basic text editor. <br> README files sharing the name of each CSV are provided to describe their columns. Data Files Included: Input to the winter seasonal road crossing models: road_xing_winter573m.csv (README_road_xing_winter573m.txt) Input to the summer seasonal road crossing models: road_xing_summer573m.csv (README_road_xing_summer573m.txt) Input to the winter seasonal road mortality models: road_mortality_winter573m.csv (README_road_mortality_winter573m.txt) Input to the summer seasonal road mortality models: road_mortality_summer573m.csv (README_road_mortality_summer573m.txt)
DOI: 10.5281/zenodo.15240712
title: Numerical simulations in half space heterogeneous media

description:  



This dataset contains the output from numerical simulations of the wave equation performed in two heterogeneous media. The models considered are uniformly heterogeneous, with heterogeneities correlated with a von Kármán autocorrelation function (ACF) and a correlation length of 320 meters. The dataset includes synthetic from two simulation scenarios that differ in the amplitude of velocity fluctuations: one with 10% fluctuations and the other with 25%.

 

The simulations were performed using the SEM46 spectral-element code (SEM46 documentation), with fourth-order interpolation on cubic elements of 200 m edge length. The source is isotropic, located at the center of the free surface plane and depth of 300m, modeled as a Ricker wavelet centered at 3 Hz.

Scenario with 10% fluctuation: files labeled with suffix 10pc_half, scenario with 25% fluctuation: files labeled with suffix 25pc_half In the scenario with 10% fluctuations, we present seismograms for two source mechanisms: an isotropic source, labeled iso, and a vertical dipole with Mzz = 1, labeled mzz. In the scenario with 25% fluctuations, only the seismograms corresponding to the isotropic source are shown.

Receiver Layout and Sampling





Each file contain 28500 seismograms




Receivers are distributed on concentric circles at the free surface,  centered at the epicentral location, each with 1500 receivers




Shells have a minimum radius of 2 km, increasing in 1 km increments



Seismograms





Each seismogram contains 5000 time samples




Sampled at 208.25 Hz


Displacement: x, y,zStrain components: exx, eyy, ezzRotations: wx, wy, wz
DOI: 10.5281/zenodo.15240713
title: Numerical simulations in half space heterogeneous media

description:  



This dataset contains the output from numerical simulations of the wave equation performed in two heterogeneous media. The models considered are uniformly heterogeneous, with heterogeneities correlated with a von Kármán autocorrelation function (ACF) and a correlation length of 320 meters. The dataset includes synthetic from two simulation scenarios that differ in the amplitude of velocity fluctuations: one with 10% fluctuations and the other with 25%.

 

The simulations were performed using the SEM46 spectral-element code (SEM46 documentation), with fourth-order interpolation on cubic elements of 200 m edge length. The source is isotropic, located at the center of the free surface plane and depth of 300m, modeled as a Ricker wavelet centered at 3 Hz.

Scenario with 10% fluctuation: files labeled with suffix 10pc_half, scenario with 25% fluctuation: files labeled with suffix 25pc_half In the scenario with 10% fluctuations, we present seismograms for two source mechanisms: an isotropic source, labeled iso, and a vertical dipole with Mzz = 1, labeled mzz. In the scenario with 25% fluctuations, only the seismograms corresponding to the isotropic source are shown.

Receiver Layout and Sampling





Each file contain 28500 seismograms




Receivers are distributed on concentric circles at the free surface,  centered at the epicentral location, each with 1500 receivers




Shells have a minimum radius of 2 km, increasing in 1 km increments



Seismograms





Each seismogram contains 5000 time samples




Sampled at 208.25 Hz


Displacement: x, y,zStrain components: exx, eyy, ezzRotations: wx, wy, wz
DOI: 10.6084/m9.figshare.5603233.v1
title: FS872 contigs and profile databases

description: anvi'o contigs database and profile database for sample FS872 from the Mid-Cayman Rise. See project description for instructions.
DOI: 10.6084/m9.figshare.7812740.v2
title: of A review of spline function procedures in R

description: of A review of spline function procedures in R
DOI: 10.6084/m9.figshare.24439225.v1
title: Raw data for Yuan et al., 2023, litter CNP concentration, JOE

description: Raw data for Yuan et al., 2023, Plant litter initial concentrations of C, N, and P. Any use of the dataset please email to the corresponding author at kyleyuechina@163.com.
DOI: 10.6084/m9.figshare.6198635.v1
title: Predicted mean monthly rainfall totals (mm) for Mauritius 2000-2011

description: Users are encouraged to read the following paper for detailed information on the modeling of the mean annual and mean monthly rainfall surfaces that these 30x30 m predicted mean monthly rainfall totals (mm) were derived from.<br>Staub, C.G., Stevens, F.R., Waylen, P.R. 2014. The geography of rainfall: Modelling the relationship between mean annual rainfall and landscape characteristics on Mauritius. Applied Geography, 45: 222–234.<br>The metadata file available on figshare provides information on the final steps involved in producing these estimates of monthly rainfall totals, which were have been aggregated by year over the period 1997-2011.<br>
DOI: 10.6084/m9.figshare.16614262.v3
title: Text-mined AuNP Synthesis Recipes Dataset

description: This dataset contains protocols for gold nanoparticle synthesis, mined from the literature. The set includes 5,154 data records, each representing a single gold nanoparticle synthesis article. Each record contains codified synthesis protocols and extracted morphological information from a total of 7,608 experimental and 12,519 characterization paragraphs.
DOI: 10.6084/m9.figshare.19499195.v1
title: patches and local annotations, slide 084, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.24659454.v1
title: Supporting lipidomics data for "Role of the Yersinia pestis Phospholipase D (Ymt) in the Initial Aggregation Step of Biofilm Formation in the Flea"

description: <b>Abstract</b>Transmission of <i>Yersinia pestis</i> by fleas depends on the formation of condensed bacterial aggregates embedded within a gel-like matrix that localize to the proventricular valve in the flea foregut and interfere with normal blood feeding. This is essentially a bacterial biofilm phenomenon, which at its end stage requires the production of a <i>Y. pestis</i> exopolysaccharide that bridges the bacteria together in a cohesive, dense biofilm that completely blocks the proventriculus. However, bacterial aggregates are evident within an hour after a flea ingests <i>Y. pestis</i>, and the bacterial exopolysaccharide is not required for this process. In this study we characterized the biochemical composition of the initial aggregates and demonstrated that the Yersinia murine toxin (Ymt), a <i>Y. pestis</i> Phospholipase D, greatly enhances rapid aggregation following infected mouse blood meals. The matrix of the bacterial aggregates is complex, containing large amounts of protein and lipid (particularly cholesterol) derived from the flea’s blood meal. Aggregation occurred after fleas ingested whole blood or serum containing <i>Y. pestis</i>, and intact, viable bacteria were not required. The initial aggregation of <i>Y. pestis</i> in the flea gut is likely due to a spontaneous physical process termed depletion aggregation that occurs commonly in environments with high concentrations of polymers or other macromolecules and particles such as bacteria. The initial aggregation sets up subsequent binding aggregation mediated by the bacterially-produced exopolysaccharide and mature biofilm that results in proventricular blockage and efficient flea-borne transmission.Posted data includes report from Creative Proteomics from their untargeted lipidomics analysis
DOI: 10.6084/m9.figshare.28429376.v2
title: Anti-corruption, digital economy policy, and new quality productivity: Empirical analysis based on spatial and moderating effects

description: To explore how digital economy policies moderate the impact of anti-corruption on new quality productivity in local and neighboring regions, this study analyzes how digital economy policies and anti-corruption affect the new quality productivity. Using panel data from 30 provinces (municipalities, districts) in China from 2011 to 2016, empirical analysis was conducted applying spatial spillover effect and moderating effect models. The results show that: (1) Anti-corruption had a negative impact on local new quality productivity and a negative spatial spillover effect on those in neighboring regions with adjacent administrative and geographical distances; (2) Digital economy policies negatively moderated the impact of anti-corruption on new quality productivity, as did policies related to digital breakthrough and application-oriented innovations; (3) Digital economy policies intensified the impact of anti-corruption on new quality productivity in neighboring regions with geographical, economic, and combined economic-geographical distances. Therefore, a differentiated approach should be implemented in promoting anti-corruption, the integration between the digital economy and AC should be accelerated, and the implementation of digital economy policies should be expedited.
DOI: 10.6084/m9.figshare.28792334.v3
title: Dataset for Direct Kneading of Thermo-Softening Pulp towards Producing Sustainable Tough Composites of Wood Nanocellulose and Polycaprolactone

description: This dataset includes raw data of stress-strain curves,TMA curves, XRD profiles and DSC curves.
DOI: 10.6084/m9.figshare.5126929.v1
title: Supplementary Material for: ECSIT Bridges RIG-I-Like Receptors to VISA in Signaling Events of Innate Antiviral Responses

description: Upon binding to RNA structures from invading viruses, RIG-I and MDA5 are recruited to mitochondria to interact with VISA and initiate antiviral type I interferon (IFN) responses. How this process is mediated is less understood. In this report, we demonstrate that ECSIT is an essential scaffolding protein that mediates the association of VISA and RIG-I or MDA5. Overexpression of ECSIT potentiated virus-triggered activation of IFN-regulatory factor 3 (IRF3) and expression of <i>IFNB1</i>, whereas knockdown of ECSIT impaired viral infection-induced activation of IRF3 and expression of <i>IFNB1</i> as well as cellular antiviral responses. Mechanistically, ECSIT was associated with VISA on mitochondria and important for bridging RIG-I and MDA5 to VISA. Our findings suggest that ECSIT mediates virus-triggered type I IFN induction by bridging RIG-I and MDA5 to the VISA complex, and provide new insights into the molecular events of innate antiviral immune responses.
DOI: 10.6084/m9.figshare.12738164.v2
title: Appendix 5.1 Sentiment analysis on WeChat posts

description: Sentiment analysis on WeChat posts
DOI: 10.6084/m9.figshare.13636589.v3
title: Characteristics, Potentials, and Limitations of Open Source SimulinkProjects for Empirical Research

description: This package holds data (models), metadata (analysis data of the models) and scripts (analyzing the models) of the paper "Characteristics, Potentials, and Limitations of Open Source SimulinkProjects for Empirical Research" by Alexander Boll, Florian Brokhausen, Tiago Amorim, Timo Kehrer and Andreas Vogelsang.<br> <br> <br> Content<br> <br> I The analyzed open source models are in the directory "models".<br> II Our analyzing code is in the directory "code".<br> III Aggregated Metadata in the directory "analysisdata". <br> See more in the README.txt<br>
DOI: 10.15482/usda.adc/1526370
title: Evapotranspiration, Irrigation, Dew/frost - Water Balance Data for The Bushland, Texas Alfalfa Datasets
DOI: 10.6084/m9.figshare.5126335.v1
title: Supplementary Material for: Sudden Death in Incident Dialysis Patients

description: <b><i>Background:</i></b> Sudden death (SD) constitutes one of the principal causes of death and is an important problem in healthcare provision. Cardiovascular diseases have a high prevalence in dialysis patients and constitute the principal cause of death. We sought to analyze retrospectively the incidence of SD in patients commencing dialysis and the factors related to its presence. <b><i>Methods:</i></b> We evaluated all the patients who began dialysis in our center between 1/11/2003 and 15/9/2007, and who were followed up until death, transplant, or study completion on 31/12/2012. We determined the presence of SD according to the following criteria: SD at 24 h (SD 24H): unexpected death occurring in the 24 h following the start of symptoms, or when the patient was found dead and had been seen alive 24 h earlier; SD at 1 h (SD 1H): death witnessed as occurring in the first hour following the start of symptoms. <b><i>Results:</i></b> We evaluated 285 patients, mean age 65.67 ± 15.7 years. In a follow-up of 39.9 ± 34.2 months (947.6 patient-years of follow-up) 168 died (59%), 28 (10%) patients presented SD 24H (2.9/100 patient-years), and 16 (6%) patients presented SD 1H (1.7/100 patient-years). In the multivariate analysis, having had a myocardial infarction or having had electrocardiographic abnormalities (Q wave, negative T wave, subendocardial lesion or QRS &gt;120 ms) were the principal independent predictors of SD 24H (OR 7.83; 95% CI 2.20-27.86; p = 0.001) and of SD 1H (OR 13.43; 95% CI 1.56-115.42; p = 0.018). <b><i>Conclusions:</i></b> SD on dialysis is very frequent. Two groups can be identified easily, with risk profiles clearly differentiated.
DOI: 10.25405/data.ncl.25590531.v1
title: Vortex Avalanches and Collective Motion in Neutron Stars

description: In this data repository, we provide the supporting data for the work, "Vortex Avalanches and Collective Motion in Neutron Stars", published in Astrophysical Journal in 2025 (preprint can be accessed at arxiv:2410.16878), and the MATLAB data here are sufficient to replot the figures with some additional information. We also append the essential plotting scripts for each figure. Further information can be required by contacting Dr I-Kang (Gary) Liu via ligetern@gmail.com.
DOI: 10.15468/dl.aj4vm6
title: Occurrence Download

description: A dataset containing 1945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Volucella bombylans (Linnaeus, 1758)"
 ]
}

 The dataset includes 1945 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009567-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.4635415.v1
title: Materials from a Workshop on Research Software Management, Sharing and Sustainability held on 20th January 2017

description: A Workshop on Research Software Management, Sharing and Sustainability was held on 20th January 2017 at Engine Shed, Bristol; hosted by Prof. James Davenport (University of Bath, Software Sustainability Institute Fellow) as part of a national series of workshops funded by Jisc. This record holds material from the workshop, including: Workshop Agenda; Slides for a keynote talk from Catherine Jones: "Why is persistently identifying your research software a Good Idea?"*; Slides for a talk from Christopher Woods: "Lessons from Publishing Sire"; Slides for a talk from James Davenport: "Software Management Plans"; Transcripts of feedback from discussion groups facilitated by Zosia Beckles, James Davenport, Catherine Jones and Christopher Woods, transcribed by Richard Evans; Notes on the workshop from James Davenport; Notes on the workshop from Miquel Perello-Nieto.<br>*these slides are not included in this record but are available at: http://purl.org/net/epubs/work/31225221
DOI: 10.6084/m9.figshare.920218.v1
title: MR Hunsaker Dissertation

description: This was my dissertation written in completion of my PhD from UC Davis in 2012
DOI: 10.6084/m9.figshare.c.3641612_d2.v1
title: MOESM5 of Identification of genetic variation in the swine toll-like receptors and development of a porcine TLR genotyping array

description: Additional file 5. Variant types according to their predicted effect and impact on protein sequence based on SnpEff.