cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10695254
title: Dataset for driving behaviors study in the mixed traffic environment with autonomous vehicles and human-driven vehicles

description: Background

In the VR-enabled driving simulator environment, this dataset is collected from 21 drivers from Beihang university in China, who have different demographic information (age, gender, driving years) and prior driving-simulator and VR experience for usage. And in our study about to be submitted to a journal, it is used to study the difference of behaviors of drivers towards autonomous vehicle(AV) and human-driven vehicle(HV) in the mixed traffic flows. 

Data collection environment: CARLA + DReyeVR(https://github.com/HARPLab/DReyeVR, which offers the support for VR) + SUMO

Experiment scenario: a non-signalized crossing in the built-in map of Town 03 of CARLA

 

Dataset structure

There are two zip files in this dataset. The one zip file  "All_Frames_of_All_drivers.zip" is consist of each frame picture for every driver/participant during the experiment, which shows the real-time scenario in the first-person perspective of driver/participant. And the other zip file "All_excelData_of_All_drivers.zip" contains all data in excel format of all drivers/participants, which is corresponding to that in "All_Frames_of_All_drivers.zip".

The names of all files in these two zip files obey the following rules: name of driver/participant + date of his/her experiment + type of vehicle(AV or HV) + experiment times(1, 2 or 3). Taking "cmy_20240104_AV_1" for an example, it means it is "cmy" who finished the first AV experiment on 4th, January, 2024.
DOI: 10.5281/zenodo.10695253
title: Dataset for driving behaviors study in the mixed traffic environment with autonomous vehicles and human-driven vehicles

description: Background

In the VR-enabled driving simulator environment, this dataset is collected from 21 drivers from Beihang university in China, who have different demographic information (age, gender, driving years) and prior driving-simulator and VR experience for usage. And in our study about to be submitted to a journal, it is used to study the difference of behaviors of drivers towards autonomous vehicle(AV) and human-driven vehicle(HV) in the mixed traffic flows. 

Data collection environment: CARLA + DReyeVR(https://github.com/HARPLab/DReyeVR, which offers the support for VR) + SUMO

Experiment scenario: a non-signalized crossing in the built-in map of Town 03 of CARLA

 

Dataset structure

There are two zip files in this dataset. The one zip file  "All_Frames_of_All_drivers.zip" is consist of each frame picture for every driver/participant during the experiment, which shows the real-time scenario in the first-person perspective of driver/participant. And the other zip file "All_excelData_of_All_drivers.zip" contains all data in excel format of all drivers/participants, which is corresponding to that in "All_Frames_of_All_drivers.zip".

The names of all files in these two zip files obey the following rules: name of driver/participant + date of his/her experiment + type of vehicle(AV or HV) + experiment times(1, 2 or 3). Taking "cmy_20240104_AV_1" for an example, it means it is "cmy" who finished the first AV experiment on 4th, January, 2024.
DOI: 10.5281/zenodo.10695407
title: A scoping review on bovine tuberculosis highlights the need for novel data streams and analytical approaches to curb zoonotic diseases

description: The following data and scripts are part of the manuscript titled 'A scoping review on bovine tuberculosis highlights the need for novel data streams and analytical approaches to curb zoonotic diseases' which is currently going through the peer-review process and has already been published as a preprint. Please read the README.txt file for information on the files uploaded.
DOI: 10.5281/zenodo.7886367
title: A scoping review on bovine tuberculosis highlights the need for novel data streams and analytical approaches to curb zoonotic diseases

description: The following data and scripts are part of the manuscript titled 'A scoping review on bovine tuberculosis highlights the need for novel data streams and analytical approaches to curb zoonotic diseases' which is currently going through the peer-review process and has already been published as a preprint. Please read the README.txt file for information on the files uploaded.
DOI: 10.5281/zenodo.7886368
title: Curbing zoonotic disease spread in multi-host-species systems will require integrating novel data streams and analytical approaches: evidence from a scoping review of bovine tuberculosis

description: The following data and scripts are part of the manuscript titled 'Curbing zoonotic disease spread in multi-host-species systems will require integrating novel data streams and analytical approaches: evidence from a scoping review of bovine tuberculosis' which will be soon sent for peer-review as well as preprint. Please read the README.txt file for information on the files uploaded.
DOI: 10.5281/zenodo.10695389
title: Patient sex and origin influence distribution of driver genes and clinical presentation of paraganglioma - Supplement 1

description: Supplement 1: Literature search terms and resulting articles inculded for data analysis of sex and origin of pheochromocytoma and paraganglioma patients
DOI: 10.5281/zenodo.10695390
title: Patient sex and origin influence distribution of driver genes and clinical presentation of paraganglioma - Supplement 1

description: Supplement 1: Literature search terms and resulting articles inculded for data analysis of sex and origin of pheochromocytoma and paraganglioma patients
DOI: 10.5281/zenodo.10695441
title: Imaging Mass Cytometry analysis of CNS tissues from patients with CAR T immune effector cell-associated neurotoxicity syndrome (ICANS)

description: Imaging Mass Cytometry analysis of CNS tissues from patients with CAR T immune effector cell-associated neurotoxicity syndrome (ICANS). Single-cell segmented data per sample is desposited as csv file, image data is available as tiff files per ROI. An analysis of the data is published in the manuscript tbd.
DOI: 10.5281/zenodo.10692019
title: Wei et al. 2024

description: Processed data for Wei et al. "High-confidence calling of normal epithelial cells allows identification of a novel stem-like cell state in the colorectal cancer microenvironment"

the scanpy object contains raw (cellbender) and normalized counts, two UMAPs for all cells and epithelial cells only, respectively, and the following meta-data columns:



sample: sample ID

sample_origin: tumour or normal

patient: patient ID

MS_status: MSI or MSS

n_counts: # of UMIs per cell

n_genes: # of gnes per cells

S_score: score for S phase

G2M_score: score of G2/M phase

cell_type_coarse: low-resolution cell type annotation (epithelial vs. immune vs. stromal)

cell_type_fine: high-resolution cell type annotation (by label transfer from Uhlitz et al.)

CCISM_call: cell assignment by CCISM

CCISM_score: score from CCISM

numbat_call: assignment by numbat

numbat_score: score from numbat

inferCNV_call:  assignment from inferCNV

iCMS_call: assignment using iCMS signatures

consensus_call: numbat/CCISM consensus identity

cell_type_epi: epithelial cell type (combining TC1-4 from Uhlitz et al., and labeling cells defined here as genomically cancer as Tumour)

cytotrace_pseudotime: pseudotime from cytotrace

louvain: louvain clusters for epithelial cells


list of processed data used to create this object



folder cellranger contains raw feature barcode matrices for single-cell RNAseq data of 10 patients

folder cellbender contains filtered feature barcode matrices after background removal

folder WGS contains vcf.gz results from somatic variant calling with mutect2

folder cellSNP contains `cellsnp-lite` output: counts of total and alternative alleles observed for somatic variants in scRNAseq data; subfolder downsampled contains results after downsampling bam files to 5, 10, 20 or 50% of reads

folder numbat contains final clone assignments by Numbat
DOI: 10.6084/m9.figshare.12452054
title: Additional file 3 of Systematic identification and comparative analysis of lysine succinylation between the green and white parts of chimeric leaves of Ananas comosus var. bracteatus

description: Additional file 3: Table S1. Characteristics of the 1262 proteins differentially expressed between the white (Wh) parts and green (Gr) parts of chimeric leaves of Ananas comosus var. bracteatus.
DOI: 10.6084/m9.figshare.12452054.v1
title: Additional file 3 of Systematic identification and comparative analysis of lysine succinylation between the green and white parts of chimeric leaves of Ananas comosus var. bracteatus

description: Additional file 3: Table S1. Characteristics of the 1262 proteins differentially expressed between the white (Wh) parts and green (Gr) parts of chimeric leaves of Ananas comosus var. bracteatus.
DOI: 10.6084/m9.figshare.12452081
title: Additional file 6 of Systematic identification and comparative analysis of lysine succinylation between the green and white parts of chimeric leaves of Ananas comosus var. bracteatus

description: Additional file 6: Table S3. Characteristics of the 380 lysine succinylation sites differentially expressed between the white (Wh) parts and green (Gr) parts of chimeric leaves of Ananas comosus var. bracteatus.
DOI: 10.6084/m9.figshare.12452081.v1
title: Additional file 6 of Systematic identification and comparative analysis of lysine succinylation between the green and white parts of chimeric leaves of Ananas comosus var. bracteatus

description: Additional file 6: Table S3. Characteristics of the 380 lysine succinylation sites differentially expressed between the white (Wh) parts and green (Gr) parts of chimeric leaves of Ananas comosus var. bracteatus.
DOI: 10.6084/m9.figshare.12452294
title: Additional file 2 of Direct-seq: programmed gRNA scaffold for streamlined scRNA-seq in CRISPR screen

description: Additional file 2: Table S1. Comparison results of KO efficiency used WT and progammed scaffold RNA in gene knockout experiment.
DOI: 10.6084/m9.figshare.12452297
title: Additional file 3 of Direct-seq: programmed gRNA scaffold for streamlined scRNA-seq in CRISPR screen

description: Additional file 3: Table S2. List of scaffold variants, tRNA, and sgRNA cassette. (a) Programmed scaffold variants used in this study. (b) tRNA sequences for gene knockout experiments. (c) Dual-sgRNA expression cassette for Jurkat TCR activation experiment. (d) Design for multiplexed gRNAs expression cassette in the activation experiment.
DOI: 10.6084/m9.figshare.12452294.v1
title: Additional file 2 of Direct-seq: programmed gRNA scaffold for streamlined scRNA-seq in CRISPR screen

description: Additional file 2: Table S1. Comparison results of KO efficiency used WT and progammed scaffold RNA in gene knockout experiment.
DOI: 10.6084/m9.figshare.12452297.v1
title: Additional file 3 of Direct-seq: programmed gRNA scaffold for streamlined scRNA-seq in CRISPR screen

description: Additional file 3: Table S2. List of scaffold variants, tRNA, and sgRNA cassette. (a) Programmed scaffold variants used in this study. (b) tRNA sequences for gene knockout experiments. (c) Dual-sgRNA expression cassette for Jurkat TCR activation experiment. (d) Design for multiplexed gRNAs expression cassette in the activation experiment.
DOI: 10.6084/m9.figshare.12452312
title: Additional file 5 of Direct-seq: programmed gRNA scaffold for streamlined scRNA-seq in CRISPR screen

description: Additional file 5: Table S4. Summary of the sequencing data. (a) Data stats of sequencing after data analysis in this study. (b) Next Generation Sequencing Analysis of the single-cell Transcriptomes of the K562-Cas9 cell infected with lentiviral sgRNA library containing programmed scaffold RNA.
DOI: 10.6084/m9.figshare.12452312.v1
title: Additional file 5 of Direct-seq: programmed gRNA scaffold for streamlined scRNA-seq in CRISPR screen

description: Additional file 5: Table S4. Summary of the sequencing data. (a) Data stats of sequencing after data analysis in this study. (b) Next Generation Sequencing Analysis of the single-cell Transcriptomes of the K562-Cas9 cell infected with lentiviral sgRNA library containing programmed scaffold RNA.
DOI: 10.15468/dl.9zygmr
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron vinicolor Sleumer"
 ]
}

 The dataset includes 22 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097401-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7gfbt
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus baldensis Dunkel"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097402-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbkf7f
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron apiense Argent"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097404-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10926051
title: ATIRGUL GULBARGINING TIBBIYOTDAGI AHAMIYAT
DOI: 10.5281/zenodo.10926052
title: ATIRGUL GULBARGINING TIBBIYOTDAGI AHAMIYAT
DOI: 10.15468/dl.wn2f7h
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rochelia drobovii (Popov) Khoshsokhan & Kaz.Osaloo"
 ]
}

 The dataset includes 53 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097405-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10843741
title: w0waCDM_nonflat_3x2pt_GCsp_polychord
DOI: 10.5281/zenodo.10865984
title: w0waCDM_nonflat_3x2pt_GCsp_polychord
DOI: 10.5281/zenodo.10875683
title: w0waCDM_nonflat_3x2pt_GCsp_polychord
DOI: 10.5281/zenodo.10888474
title: w0waCDM_nonflat_3x2pt_GCsp_polychord
DOI: 10.5281/zenodo.10925996
title: w0waCDM_nonflat_3x2pt_GCsp_polychord

description: This is the final upload, run is finished.
DOI: 10.5281/zenodo.10843740
title: w0waCDM_nonflat_3x2pt_GCsp_polychord

description: This is the final upload, run is finished.
DOI: 10.5281/zenodo.10854210
title: w0waCDM_nonflat_3x2pt_GCsp_polychord
DOI: 10.5281/zenodo.10894065
title: w0waCDM_nonflat_3x2pt_GCsp_polychord
DOI: 10.5281/zenodo.10900229
title: w0waCDM_nonflat_3x2pt_GCsp_polychord
DOI: 10.5281/zenodo.10911392
title: w0waCDM_nonflat_3x2pt_GCsp_polychord
DOI: 10.6084/m9.figshare.25223987
title: <i>Brooklawnia propionicigene</i><i>s</i> sp. nov., a facultatively anaerobic, propionate-producing bacterium isolated from a methanogenic reactor treating waste from cattle farms

description: Supplementary Material for '<i>Brooklawnia propionicigene</i><i>s</i> sp. nov., a facultatively anaerobic, propionate-producing bacterium isolated from a methanogenic reactor treating waste from cattle farms' as described in International Journal of Systematic and Evolutionary Microbiology.
DOI: 10.6084/m9.figshare.25223987.v1
title: <i>Brooklawnia propionicigene</i><i>s</i> sp. nov., a facultatively anaerobic, propionate-producing bacterium isolated from a methanogenic reactor treating waste from cattle farms

description: Supplementary Material for '<i>Brooklawnia propionicigene</i><i>s</i> sp. nov., a facultatively anaerobic, propionate-producing bacterium isolated from a methanogenic reactor treating waste from cattle farms' as described in International Journal of Systematic and Evolutionary Microbiology.
DOI: 10.5281/zenodo.10926069
title: O'ZBEK TILINI CHET TILI O'QITISH VA O'QITISHNING LINGVODIDAKTIKA ASOSLARI (URDU TILI MISOLIDA)
DOI: 10.5281/zenodo.10926070
title: O'ZBEK TILINI CHET TILI O'QITISH VA O'QITISHNING LINGVODIDAKTIKA ASOSLARI (URDU TILI MISOLIDA)
DOI: 10.5281/zenodo.10926117
title: THE ROLE OF WASTE AS A VALUABLE SUBSTANCE
DOI: 10.5281/zenodo.10926118
title: THE ROLE OF WASTE AS A VALUABLE SUBSTANCE
DOI: 10.15468/dl.d98vpp
title: Occurrence Download

description: A dataset containing 2172 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rotheca myricoides (Hochst.) Steane & Mabb."
 ]
}

 The dataset includes 2172 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097406-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10926131
title: G'ARB MAMLAKATLARIDA OILAVIY MUNOSABATLAR
DOI: 10.5281/zenodo.10926132
title: G'ARB MAMLAKATLARIDA OILAVIY MUNOSABATLAR
DOI: 10.15468/dl.ce53c6
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus balikunensis J.G.Liu"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097410-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10926061
title: Weather data from Langebaanweg, South Africa, from 2015 to 2022

description: Weather data from Langebaanweg, South Africa, from 2015 to 2022. The measurement location is latitude -32.9720 and longitude 18.1570. The dataset contains the hourly measurements of the wind speed, the wind direction, and the rainfall.
DOI: 10.5281/zenodo.10926062
title: Weather data from Langebaanweg, South Africa, from 2015 to 2022

description: Weather data from Langebaanweg, South Africa, from 2015 to 2022. The measurement location is latitude -32.9720 and longitude 18.1570. The dataset contains the hourly measurements of the wind speed, the wind direction, and the rainfall.
DOI: 10.15468/dl.54wbyf
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron vinkii Sleumer"
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097409-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10926022
title: Extended Data for "A Scoping Review of Infertility Research conducted in the Republic of Ireland"

description: This dataset contains the following files:

·         Extended Data 1: Changes to Methodology from Protocol

·         Extended Data 2: List of Included Documents (n=105); List of Potentially Relevant Studies that were not Located (n=8)

·         Extended Data 3: Data Extraction Table

·         Extended Data 4: Completed PRISMA ScR Checklist

These files comprise extended data for the paper: 

Earley, A., O’Dea, A., Madden, C., O’Connor, P., Byrne, D., Murphy, AW., & Lydon, S (2024). A Scoping Review of Infertility Research conducted in the Republic Of Ireland. Under review.
DOI: 10.5281/zenodo.10926023
title: Extended Data for "A Scoping Review of Infertility Research conducted in the Republic of Ireland"

description: This dataset contains the following files:

·         Extended Data 1: Changes to Methodology from Protocol

·         Extended Data 2: List of Included Documents (n=105); List of Potentially Relevant Studies that were not Located (n=8)

·         Extended Data 3: Data Extraction Table

·         Extended Data 4: Completed PRISMA ScR Checklist

These files comprise extended data for the paper: 

Earley, A., O’Dea, A., Madden, C., O’Connor, P., Byrne, D., Murphy, AW., & Lydon, S (2024). A Scoping Review of Infertility Research conducted in the Republic Of Ireland. Under review.
DOI: 10.15468/dl.b3rajv
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron apoanum Stein"
 ]
}

 The dataset includes 105 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097408-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byjaqj
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rochelia laxa I.M.Johnst."
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097411-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d46rzx
title: Occurrence Download

description: A dataset containing 12099 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Wasmannia auropunctata (Roger, 1863)"
 ]
}

 The dataset includes 12099 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097407-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.832smx
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus balkharicus N.Busch"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097414-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wuuaz
title: Occurrence Download

description: A dataset containing 245 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rotheca nudiflora (Moldenke) Callm. & Phillipson"
 ]
}

 The dataset includes 245 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097413-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3nhepn
title: Occurrence Download

description: A dataset containing 617 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron virgatum Hook.fil."
 ]
}

 The dataset includes 617 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097412-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hr329
title: Occurrence Download

description: A dataset containing 163 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron araiophyllum Balf.fil. & W.W.Sm."
 ]
}

 The dataset includes 163 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097415-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.