cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dj7j6g
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cordulegaster helladica (Lohmann, 1993)"
 ]
}

 The dataset includes 79 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179740-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vdwcmr
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus coccifera var. integrifolia Boiss."
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004499-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8btw2s
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lynx pardinus (Temminck, 1827)",
 "Year 1000-1970"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031838-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbp3wu
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Silhouettea aegyptia (Chabanaud, 1933)"
 ]
}

 The dataset includes 45 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060461-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9wgu3
title: Occurrence Download

description: A dataset containing 58473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Geometry POLYGON((36.7367 30.74239,36.63032 38.5499,33.0705 48.54256,20.46715 48.65111,6.96339 47.01499,-6.0214 38.27961,-5.76685 33.68992,22.07496 28.86608,36.7367 30.74239))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Echinodermata"
 ]
}

 The dataset includes 58473 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025322-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o6k1u4
title: Occurrence Download

description: A dataset containing 154440 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calidris minuta (Leisler, 1812)"
 ]
}

 The dataset includes 154440 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004499-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtwdve
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is Portugal"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Byssoloma leucoblepharum (Nyl.) Vain."
 ]
}

 The dataset includes 149 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008423-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktvb8i
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis bartschi (Cochran, 1928)"
 ]
}

 The dataset includes 225 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004499-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wn4qep
title: Occurrence Download

description: A dataset containing 379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Prunus cerasoides Buch.-Ham. ex D.Don"
 ]
}

 The dataset includes 379 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136958-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jknqju
title: Occurrence Download

description: A dataset listing the 8 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lynx lynx (Linnaeus, 1758)"
 ]
}

 The dataset's 8 records were derived from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014920-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35k4w2
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (France, Spain, Andorra)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mustela erminea Linnaeus, 1758",
 "Year 1000-1970"
 ]
}

 The dataset includes 67 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031841-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mitt3w
title: Occurrence Download

description: A dataset containing 3232320 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus L."
 ]
}

 The dataset includes 3232320 records from 1321 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004499-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13520761.v1
title: Additional file 3 of Integrated genomic and transcriptomic analysis reveals unique characteristics of hepatic metastases and pro-metastatic role of complement C1q in pancreatic ductal adenocarcinoma

description: Additional file 3: Table S3. Significantly altered CNA regions.
DOI: 10.5281/zenodo.10696994
title: Example data for Graph genome comparison workflow

description: This workflow is designed for comparing different species at the pan-genomic level and provides base-level alignment information to identify sequence with synteny (SYN) as well as hyper divergence (HYD). Moreover, according to the orthogroups inferred by OrthoFinder, homologous genes located in collinear regions can be identified.
DOI: 10.5281/zenodo.10696995
title: Example data for Graph genome comparison workflow

description: This workflow is designed for comparing different species at the pan-genomic level and provides base-level alignment information to identify sequence with synteny (SYN) as well as hyper divergence (HYD). Moreover, according to the orthogroups inferred by OrthoFinder, homologous genes located in collinear regions can be identified.
DOI: 10.5281/zenodo.10697234
title: Example data for Graph genome comparison workflow

description: This workflow is designed for comparing different species at the pan-genomic level and provides base-level alignment information to identify sequence with synteny (SYN) as well as hyper divergence (HYD). Moreover, according to the orthogroups inferred by OrthoFinder, homologous genes located in collinear regions can be identified.
DOI: 10.6084/m9.figshare.22434148
title: Geographical variation in community-wide herbivory matches patterns of intraspecific variation instead of species turnover

description:   
We selected 43 grassland sites along a 1,500-km latitudinal gradient (<em>c</em>. 27°N to 39°N) and a 2,698-m elevational gradient (1,886 m to 4,584 m) on the Qinghai-Tibetan Plateau.  We calculated the overall herbivory percentage (ranging from 0% to 100%) for each plant species by first multiplying the number of leaves in each damage class by the median removal value for that class (i.e., 0%, 2.5%, 7.5%, 15.0%, 35.0%, or 75.0%). Obtained values were then summed across all damage classes and the sum divided by the total number of leaves (including undamaged ones) in a sample. We calculated community-weighted mean of herbivory (hereafter, ‘CWM herbivory’) as the measurement of community-wide herbivory, which is calculated as summed species’ (herbivory) means weighted by their abundance. We evaluated geographical patterns in invertebrate herbivory pressure at the population- and community-levels, while also evaluating the importance of geographical variation in mediating the effects of abiotic and biotic factors on intraspecific variation (through changes in herbivory on component species) and species turnover effects (through changes in plant community composition).
DOI: 10.6084/m9.figshare.13520758
title: Additional file 2 of Integrated genomic and transcriptomic analysis reveals unique characteristics of hepatic metastases and pro-metastatic role of complement C1q in pancreatic ductal adenocarcinoma

description: Additional file 2: Table S2. Somatic mutation list.
DOI: 10.6084/m9.figshare.13521232
title: Additional file 2 of Four subgroups based on tau levels in Alzheimer’s disease observed in two independent cohorts

description: Additional file 2.
DOI: 10.6084/m9.figshare.13521232.v1
title: Additional file 2 of Four subgroups based on tau levels in Alzheimer’s disease observed in two independent cohorts

description: Additional file 2.
DOI: 10.5281/zenodo.10694318
title: Fatiando a Terra Data: Moon - Gravity grid at 10 arc-minute resolution

description: Global 10 arc-minute resolution grids of the amplitude of the gravity acceleration (gravitational + centrifugal) of the Moon at a constant height. Generated from the spherical harmonic model GRGM1200B (Goossens et al., 2019).

Note: This is a processed and formatted version of the source dataset below. It's meant for use in documentation and tutorials of the Fatiando a Terra project. Please cite the original authors when using this dataset.

Changes made: 



Expanded the spherical harmonic model into a grid.

Replaced the GM, radius, and angular velocity of the model the those from Wieczorek (2015).

Generate the grid at a constant height of 11 km above the reference lunar sphere to guarantee the data are outside the topographic masses.


Source: Goossens, S., Sabaka, T. J., Wieczorek, M. A., Neumann, G. A., Mazarico, E., Lemoine, F. G., et al. (2020). High‐Resolution Gravity Field Models from GRAIL Data and Implications for Models of the Density Structure of the Moon's Crust. Journal of Geophysical Research: Planets. doi:10.1029/2019je006086 ; NASA's Planetary Geology, Geophysics and Geochemistry Laboratory

Source license: public domain

Repository: https://github.com/fatiando-data/moon-gravity-10arcmin
DOI: 10.5281/zenodo.10694319
title: Fatiando a Terra Data: Moon - Gravity grid at 10 arc-minute resolution

description: Global 10 arc-minute resolution grids of the amplitude of the gravity acceleration (gravitational + centrifugal) of the Moon at a constant height. Generated from the spherical harmonic model GRGM1200B (Goossens et al., 2019).

Note: This is a processed and formatted version of the source dataset below. It's meant for use in documentation and tutorials of the Fatiando a Terra project. Please cite the original authors when using this dataset.

Changes made: 



Expanded the spherical harmonic model into a grid.

Replaced the GM, radius, and angular velocity of the model the those from Wieczorek (2015).

Generate the grid at a constant height of 11 km above the reference lunar sphere to guarantee the data are outside the topographic masses.


Source: Goossens, S., Sabaka, T. J., Wieczorek, M. A., Neumann, G. A., Mazarico, E., Lemoine, F. G., et al. (2020). High‐Resolution Gravity Field Models from GRAIL Data and Implications for Models of the Density Structure of the Moon's Crust. Journal of Geophysical Research: Planets. doi:10.1029/2019je006086 ; NASA's Planetary Geology, Geophysics and Geochemistry Laboratory

Source license: public domain

Repository: https://github.com/fatiando-data/moon-gravity-10arcmin
DOI: 10.6084/m9.figshare.13521307.v1
title: Additional file 1 of Comprehensive integrative profiling of upper tract urothelial carcinomas

description: Additional file 1: Table S1. Clinicopathological tumor features of upper-tract urothelial carcinomas samples used for the study. Table S2. Association between clinical variables and patients progression-free and overall survival. Table S3. List of somatic mutations identified in the whole-exome sequencing of upper-tract urothelial carcinomas (n = 30). Table S4. List of significantly mutated genes identified by the MutSigCV algorithm. Table S5. Mutual exclusivity and co-occurrence analysis for the 10 most significantly mutated genes using the one-side Fisher’s exact test. Table S6. Association between top 10 frequently significantly mutated UTUC genes and muscle-invasive status. Table S7. Association between UTUC RNA unsupervised clustering and clinical variables. Table S8. Subtypes of UTUC samples using consensus molecular classification of muscle-invasive bladder cancer. Table S9. Association between top 10 frequently significantly mutated genes and DNA methylation-based clusters in UTUC samples. Table S10. Association between clinical variables and DNA methylation UTUC based clustering in samples with EpiC-low and EpiC-high signatures. Table S11. List of differentially methylated regions (DMR) using hypomethylated probes in FGFR3-mutated UTUC cases as compared to FGFR-wild type samples. Table S12. List of genes with promoter CpG islands methylation in UTUC tumor samples. Only those with a frequency higher than 10% are reported. Table S13. Association between UTUC EpiC signature and clinical variables in TCGA bladder carcinomas cohort. Table S14. Association between significant mutations of UTUC and supervised TCGA DNA methylation based clustering. Table S15. Association between mutation and copy number contributors and iClusters.
DOI: 10.6084/m9.figshare.13521307
title: Additional file 1 of Comprehensive integrative profiling of upper tract urothelial carcinomas

description: Additional file 1: Table S1. Clinicopathological tumor features of upper-tract urothelial carcinomas samples used for the study. Table S2. Association between clinical variables and patients progression-free and overall survival. Table S3. List of somatic mutations identified in the whole-exome sequencing of upper-tract urothelial carcinomas (n = 30). Table S4. List of significantly mutated genes identified by the MutSigCV algorithm. Table S5. Mutual exclusivity and co-occurrence analysis for the 10 most significantly mutated genes using the one-side Fisher’s exact test. Table S6. Association between top 10 frequently significantly mutated UTUC genes and muscle-invasive status. Table S7. Association between UTUC RNA unsupervised clustering and clinical variables. Table S8. Subtypes of UTUC samples using consensus molecular classification of muscle-invasive bladder cancer. Table S9. Association between top 10 frequently significantly mutated genes and DNA methylation-based clusters in UTUC samples. Table S10. Association between clinical variables and DNA methylation UTUC based clustering in samples with EpiC-low and EpiC-high signatures. Table S11. List of differentially methylated regions (DMR) using hypomethylated probes in FGFR3-mutated UTUC cases as compared to FGFR-wild type samples. Table S12. List of genes with promoter CpG islands methylation in UTUC tumor samples. Only those with a frequency higher than 10% are reported. Table S13. Association between UTUC EpiC signature and clinical variables in TCGA bladder carcinomas cohort. Table S14. Association between significant mutations of UTUC and supervised TCGA DNA methylation based clustering. Table S15. Association between mutation and copy number contributors and iClusters.
DOI: 10.6084/m9.figshare.20336812
title: Additional file 2 of Exploration of dilated cardiomyopathy for biomarkers and immune microenvironment: evidence from RNA-seq

description: Additional file 2. DEGs between normal and DCM samples.
DOI: 10.6084/m9.figshare.13520826.v1
title: Additional file 4 of In vivo nuclear RNA structurome reveals RNA-structure regulation of mRNA processing in plants

description: Additional file 4. A detailed list of alternative 3' splice site events.
DOI: 10.6084/m9.figshare.13520829.v1
title: Additional file 5 of In vivo nuclear RNA structurome reveals RNA-structure regulation of mRNA processing in plants

description: Additional file 5. A detailed list of poly(A) sites with high coverage (more than 1 RT-stop per nucleotide) in in vivo libraries.
DOI: 10.6084/m9.figshare.16667073.v2
title: The landscape of accessible chromatin in quiescent cardiac fibroblasts and cardiac fibroblasts activated after myocardial infarction

description: After myocardial infarction, the massive death of cardiomyocytes leads to cardiac fibroblast proliferation and myofibroblast differentiation, which contributes to the extracellular matrix remodelling of the infarcted myocardium. We recently found that myofibroblasts further differentiate into matrifibrocytes, a newly identified cardiac fibroblast differentiation state. Cardiac fibroblasts of different states have distinct gene expression profiles closely related to their functions. However, the mechanism responsible for the gene expression changes during these activation and differentiation events is still not clear. In this study, the gene expression profiling and genome-wide accessible chromatin mapping of mouse cardiac fibroblasts isolated from the uninjured myocardium and the infarct at multiple time points corresponding to different differentiation states were performed by RNA sequencing (RNA-seq) and the assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq), respectively. ATAC-seq peaks were highly enriched in the promoter area and the distal area where the enhancers are located. A positive correlation was identified between the expression and promoter accessibility for many dynamically expressed genes, even though evidence showed that mechanisms independent of chromatin accessibility may also contribute to the gene expression changes in cardiac fibroblasts after MI. Moreover, motif enrichment analysis and gene regulatory network construction identified transcription factors that possibly contributed to the differential gene expression between cardiac fibroblasts of different states.
DOI: 10.6084/m9.figshare.12997079
title: Additional file 3 of Metabolic and transcriptome responses of RNAi-mediated AMPKα knockdown in Tribolium castaneum

description: Additional file 3.
DOI: 10.6084/m9.figshare.12997076
title: Additional file 2 of Metabolic and transcriptome responses of RNAi-mediated AMPKα knockdown in Tribolium castaneum

description: Additional file 2.
DOI: 10.6084/m9.figshare.16667073
title: The landscape of accessible chromatin in quiescent cardiac fibroblasts and cardiac fibroblasts activated after myocardial infarction

description: After myocardial infarction, the massive death of cardiomyocytes leads to cardiac fibroblast proliferation and myofibroblast differentiation, which contributes to the extracellular matrix remodelling of the infarcted myocardium. We recently found that myofibroblasts further differentiate into matrifibrocytes, a newly identified cardiac fibroblast differentiation state. Cardiac fibroblasts of different states have distinct gene expression profiles closely related to their functions. However, the mechanism responsible for the gene expression changes during these activation and differentiation events is still not clear. In this study, the gene expression profiling and genome-wide accessible chromatin mapping of mouse cardiac fibroblasts isolated from the uninjured myocardium and the infarct at multiple time points corresponding to different differentiation states were performed by RNA sequencing (RNA-seq) and the assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq), respectively. ATAC-seq peaks were highly enriched in the promoter area and the distal area where the enhancers are located. A positive correlation was identified between the expression and promoter accessibility for many dynamically expressed genes, even though evidence showed that mechanisms independent of chromatin accessibility may also contribute to the gene expression changes in cardiac fibroblasts after MI. Moreover, motif enrichment analysis and gene regulatory network construction identified transcription factors that possibly contributed to the differential gene expression between cardiac fibroblasts of different states.
DOI: 10.6084/m9.figshare.12997082.v1
title: Additional file 4 of Metabolic and transcriptome responses of RNAi-mediated AMPKα knockdown in Tribolium castaneum

description: Additional file 4.
DOI: 10.6084/m9.figshare.12997076.v1
title: Additional file 2 of Metabolic and transcriptome responses of RNAi-mediated AMPKα knockdown in Tribolium castaneum

description: Additional file 2.
DOI: 10.6084/m9.figshare.13520838.v1
title: Additional file 8 of In vivo nuclear RNA structurome reveals RNA-structure regulation of mRNA processing in plants

description: Additional file 8. A detailed list of alternative poly(A) sites with high coverage (more than 1 RT-stop per nucleotide) in deproteinized libraries.
DOI: 10.34740/kaggle/dsv/7686202
title: ADIDAS US SALES DATA ANALYSIS
DOI: 10.6084/m9.figshare.13520758.v1
title: Additional file 2 of Integrated genomic and transcriptomic analysis reveals unique characteristics of hepatic metastases and pro-metastatic role of complement C1q in pancreatic ductal adenocarcinoma

description: Additional file 2: Table S2. Somatic mutation list.
DOI: 10.6084/m9.figshare.13521328.v1
title: Research on MD simulation for diamond tool cutting iron

description: In this paper, the molecular dynamics simulation method was used to establish the MD model for diamond cutting iron. The cutting process was simulated, and the change rules of temperature, cutting stress and radial distribution function with timestep were analysed. The results show that: As the cutting progresses, the temperature will increase gradually, the cutting stress fluctuates around 50,000 bars, and the wear mechanism of tool is analysed form a microscopic perspective; By adjusting the posture of the tool, the rake angle and the flank angle are changed, and the size of the thermostat layer and boundary layer are adjusted at the same time, which reduces the impact of non-Newton atoms on the workpiece; The change rules of temperature and cutting stress under different rake angle and flank angle conditions are analysed, and the minimum cutting stress is obtained when the rake angle is 15 degrees; By prefabricating a crack on the flank face, the change rule of the crack edge stress is studied. It is found that due to the occurrence of crack, the contact area between the tool and the workpiece is reduced, and there is obvious stress concentration at the edge of the crack.