cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16570042.v1
title: Additional file 5 of Up-regulation of apoptotic- and cell survival-related gene pathways following exposures of western corn rootworm to B. thuringiensis crystalline pesticidal proteins in transgenic maize roots

description: Additional file 5: Supplementary Table S4. Transcripts with significant differences in read counts (expression) between Diabrotica virgifera virgifera larvae feeding on transgenic maize expressing the insecticidal B. thuringiensis (Bt) Gpp34/Tpp35Ab1 toxin (T5; Table 2) compared to control non-Bt maize (T7). For each transcript, indication of differential expression also being shared when larvae were exposed to Heterorhabditis bacteriophora (Hb) and Metarhizium anisopliae (MA) is indicated with a “1”. Standard output are shown for DESeq2 (baseMean = the average of the normalized counts taken over all samples; log2FoldChange = log2 fold change between the groups; lfcSE = standard error of the log2FoldChange; stat = Wald statistic; pvalue = Wald test P-value; BH_padj = Benjamini-Hochberg adjusted P-value) and EdgeR (logFC = log2 fold change between the groups; logCPM = the average log2-counts-per-million; PValue = the two-sided P-value; BF_FDR = Bonferroni adjusted P-value). Lack of significance for any given transcript in DESeq2 or EdgeR results shown as “-”. The 1374 transcripts differentially expressed in both DESeq2 and EdgeR estimates are shown above the horizonal line. Transcript annotations include presence (Y) or absence (N) of signal_peptide probability (signalp_prob) threshold of &gt; 0.700 shown only for “complete” proteins (match length = 1.0 to Drosophila melanogaster (Dm) or Trobiolium castaneum (Tc) protein models). PFAMSCAN_PfamA search results (format transcript query start, transcript query end: frame, strand (+ or -), range of hit to PFAM domain/PFAM domain name/ E-value/percent identity). Predicted protein information given (transcript start: transcript end: frame: strand (+ or -): amino acid sequence). BLASTx query results to indicated databases shown in standard output format with “/” indicating no values for queries receiving of hits. The 13 transcripts in blue italicized text are putatively derived from Hb or Ma.
DOI: 10.6084/m9.figshare.16570045
title: Additional file 6 of Up-regulation of apoptotic- and cell survival-related gene pathways following exposures of western corn rootworm to B. thuringiensis crystalline pesticidal proteins in transgenic maize roots

description: Additional file 6: Supplementary Table S5. Transcripts with significant differences in read counts (expression) between Diabrotica virgifera virgifera larvae infected with Heterorhabditis bacteriophora (Hb) (T6; Table 2) compared to control non-Bt maize (T7). For each transcript, standard output are shown for DESeq2 (baseMean = the average of the normalized counts taken over all samples; log2FoldChange = log2 fold change between the groups; lfcSE = standard error of the log2FoldChange; stat = Wald statistic; pvalue = Wald test P-value; BH_padj = Benjamini-Hochberg adjusted P-value) and EdgeR (logFC = log2 fold change between the groups; logCPM = the average log2-counts-per-million; PValue = the two-sided P-value; BF_FDR = Bonferroni adjusted P-value). Lack of significance for any given transcript in DESeq2 or EdgeR results shown as “-”. The 1562 transcripts differentially expressed in both DESeq2 and EdgeR estimates are shown above the horizonal line. Transcript annotations include presence (Y) or absence (N) of signal_peptide probability (signalp_prob) threshold of &gt; 0.700 shown only for “complete” proteins (match length = 1.0 to Drosophila melanogaster (Dm) or Trobiolium castaneum (Tc) protein models). PFAMSCAN_PfamA search results (format transcript query start, transcript query end: frame, strand (+ or -), range of hit to PFAM domain/PFAM domain name/ E-value/percent identity). Predicted protein information given (transcript start: transcript end: frame: strand (+ or -): amino acid sequence). BLASTx query results to indicated databases shown in standard output format with “/” indicating no values for queries receiving of hits.
DOI: 10.6084/m9.figshare.16570045.v1
title: Additional file 6 of Up-regulation of apoptotic- and cell survival-related gene pathways following exposures of western corn rootworm to B. thuringiensis crystalline pesticidal proteins in transgenic maize roots

description: Additional file 6: Supplementary Table S5. Transcripts with significant differences in read counts (expression) between Diabrotica virgifera virgifera larvae infected with Heterorhabditis bacteriophora (Hb) (T6; Table 2) compared to control non-Bt maize (T7). For each transcript, standard output are shown for DESeq2 (baseMean = the average of the normalized counts taken over all samples; log2FoldChange = log2 fold change between the groups; lfcSE = standard error of the log2FoldChange; stat = Wald statistic; pvalue = Wald test P-value; BH_padj = Benjamini-Hochberg adjusted P-value) and EdgeR (logFC = log2 fold change between the groups; logCPM = the average log2-counts-per-million; PValue = the two-sided P-value; BF_FDR = Bonferroni adjusted P-value). Lack of significance for any given transcript in DESeq2 or EdgeR results shown as “-”. The 1562 transcripts differentially expressed in both DESeq2 and EdgeR estimates are shown above the horizonal line. Transcript annotations include presence (Y) or absence (N) of signal_peptide probability (signalp_prob) threshold of &gt; 0.700 shown only for “complete” proteins (match length = 1.0 to Drosophila melanogaster (Dm) or Trobiolium castaneum (Tc) protein models). PFAMSCAN_PfamA search results (format transcript query start, transcript query end: frame, strand (+ or -), range of hit to PFAM domain/PFAM domain name/ E-value/percent identity). Predicted protein information given (transcript start: transcript end: frame: strand (+ or -): amino acid sequence). BLASTx query results to indicated databases shown in standard output format with “/” indicating no values for queries receiving of hits.
DOI: 10.6084/m9.figshare.16570048
title: Additional file 7 of Up-regulation of apoptotic- and cell survival-related gene pathways following exposures of western corn rootworm to B. thuringiensis crystalline pesticidal proteins in transgenic maize roots

description: Additional file 7: Supplementary Table S6. Transcripts with significant differences in read counts (expression) between Diabrotica virgifera virgifera larvae infected with Metarhizium anisopliae (Ma) (T3; Table 2) compared to control non-Bt maize (T7). For each transcript, standard output are shown for DESeq2 (baseMean = the average of the normalized counts taken over all samples; log2FoldChange = log2 fold change between the groups; lfcSE = standard error of the log2FoldChange; stat = Wald statistic; pvalue = Wald test P-value; BH_padj = Benjamini-Hochberg adjusted P-value) and EdgeR (logFC = log2 fold change between the groups; logCPM = the average log2-counts-per-million; PValue = the two-sided P-value; BF_FDR = Bonferroni adjusted P-value). Lack of significance for any given transcript in DESeq2 or EdgeR results shown as “-”. The 1199 transcripts differentially expressed in both DESeq2 and EdgeR estimates are shown above the horizonal line. Transcript annotations include presence (Y) or absence (N) of signal_peptide probability (signalp_prob) threshold of &gt; 0.700 shown only for “complete” proteins (match length = 1.0 to Drosophila melanogaster (Dm) or Trobiolium castaneum (Tc) protein models). PFAMSCAN_PfamA search results (format transcript query start, transcript query end: frame, strand (+ or -), range of hit to PFAM domain/PFAM domain name/ E-value/percent identity). Predicted protein information given (transcript start: transcript end: frame: strand (+ or -): amino acid sequence). BLASTx query results to indicated databases shown in standard output format with “/” indicating no values for queries receiving of hits.
DOI: 10.6084/m9.figshare.16570048.v1
title: Additional file 7 of Up-regulation of apoptotic- and cell survival-related gene pathways following exposures of western corn rootworm to B. thuringiensis crystalline pesticidal proteins in transgenic maize roots

description: Additional file 7: Supplementary Table S6. Transcripts with significant differences in read counts (expression) between Diabrotica virgifera virgifera larvae infected with Metarhizium anisopliae (Ma) (T3; Table 2) compared to control non-Bt maize (T7). For each transcript, standard output are shown for DESeq2 (baseMean = the average of the normalized counts taken over all samples; log2FoldChange = log2 fold change between the groups; lfcSE = standard error of the log2FoldChange; stat = Wald statistic; pvalue = Wald test P-value; BH_padj = Benjamini-Hochberg adjusted P-value) and EdgeR (logFC = log2 fold change between the groups; logCPM = the average log2-counts-per-million; PValue = the two-sided P-value; BF_FDR = Bonferroni adjusted P-value). Lack of significance for any given transcript in DESeq2 or EdgeR results shown as “-”. The 1199 transcripts differentially expressed in both DESeq2 and EdgeR estimates are shown above the horizonal line. Transcript annotations include presence (Y) or absence (N) of signal_peptide probability (signalp_prob) threshold of &gt; 0.700 shown only for “complete” proteins (match length = 1.0 to Drosophila melanogaster (Dm) or Trobiolium castaneum (Tc) protein models). PFAMSCAN_PfamA search results (format transcript query start, transcript query end: frame, strand (+ or -), range of hit to PFAM domain/PFAM domain name/ E-value/percent identity). Predicted protein information given (transcript start: transcript end: frame: strand (+ or -): amino acid sequence). BLASTx query results to indicated databases shown in standard output format with “/” indicating no values for queries receiving of hits.
DOI: 10.6084/m9.figshare.16570054
title: Additional file 9 of Up-regulation of apoptotic- and cell survival-related gene pathways following exposures of western corn rootworm to B. thuringiensis crystalline pesticidal proteins in transgenic maize roots

description: Additional file 9: Supplementary Table S7. Predicted functional PFAM domains encoded by transcripts differentially expressed by Diabrioca virgifera virgifera exposed to Heterorhabditis bacteriophora compared to controls. Counts provided for instances when ≥3 transcripts received an annotation within at least one of the treatments. InterPro identification (InterPro_ID) are also given, with NA indicating corresponding InterPro_ID not available.
DOI: 10.6084/m9.figshare.16570054.v1
title: Additional file 9 of Up-regulation of apoptotic- and cell survival-related gene pathways following exposures of western corn rootworm to B. thuringiensis crystalline pesticidal proteins in transgenic maize roots

description: Additional file 9: Supplementary Table S7. Predicted functional PFAM domains encoded by transcripts differentially expressed by Diabrioca virgifera virgifera exposed to Heterorhabditis bacteriophora compared to controls. Counts provided for instances when ≥3 transcripts received an annotation within at least one of the treatments. InterPro identification (InterPro_ID) are also given, with NA indicating corresponding InterPro_ID not available.
DOI: 10.6084/m9.figshare.16570078
title: Additional file 4 of Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation

description: Additional file 4: Dataset S1. Genomic windows identified as putative introgressed regions (pIRs) across nine trios.
DOI: 10.6084/m9.figshare.16570078.v1
title: Additional file 4 of Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation

description: Additional file 4: Dataset S1. Genomic windows identified as putative introgressed regions (pIRs) across nine trios.
DOI: 10.6084/m9.figshare.16570081
title: Additional file 5 of Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation

description: Additional file 5: Dataset S2. Gene functional annotation for the genome reference of Vitis arizonica b40-14 version 1.
DOI: 10.6084/m9.figshare.16570081.v1
title: Additional file 5 of Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation

description: Additional file 5: Dataset S2. Gene functional annotation for the genome reference of Vitis arizonica b40-14 version 1.
DOI: 10.6084/m9.figshare.16570084
title: Additional file 6 of Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation

description: Additional file 6: Dataset S3. Significant SNPs (FDR adjusted p
DOI: 10.6084/m9.figshare.16570087
title: Additional file 7 of Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation

description: Additional file 7: Dataset S4. Significant SNPs (Bayes’ Factor &gt; 10) from GEA with the top three bioclimatic variables per species.
DOI: 10.6084/m9.figshare.16570084.v1
title: Additional file 6 of Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation

description: Additional file 6: Dataset S3. Significant SNPs (FDR adjusted p
DOI: 10.6084/m9.figshare.16570087.v1
title: Additional file 7 of Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation

description: Additional file 7: Dataset S4. Significant SNPs (Bayes’ Factor &gt; 10) from GEA with the top three bioclimatic variables per species.
DOI: 10.6084/m9.figshare.16570090
title: Additional file 8 of Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation

description: Additional file 8: Dataset S5. Subset of significant SNPs (Bayes’ Factor &gt; 10) from GEA with the top three bioclimatic variables in the P2 species that were in putative introgressed regions (pIRs).
DOI: 10.6084/m9.figshare.16570090.v1
title: Additional file 8 of Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation

description: Additional file 8: Dataset S5. Subset of significant SNPs (Bayes’ Factor &gt; 10) from GEA with the top three bioclimatic variables in the P2 species that were in putative introgressed regions (pIRs).
DOI: 10.6084/m9.figshare.16570102
title: Additional file 1 of Importance of Circ0009910 in colorectal cancer pathogenesis as a possible regulator of miR-145 and PEAK1

description: Additional file 1: Supplementary Table 1.
DOI: 10.6084/m9.figshare.16570102.v1
title: Additional file 1 of Importance of Circ0009910 in colorectal cancer pathogenesis as a possible regulator of miR-145 and PEAK1

description: Additional file 1: Supplementary Table 1.
DOI: 10.6084/m9.figshare.16570105
title: Additional file 2 of Importance of Circ0009910 in colorectal cancer pathogenesis as a possible regulator of miR-145 and PEAK1

description: Additional file 2: Supplementary Table 2.
DOI: 10.6084/m9.figshare.16570105.v1
title: Additional file 2 of Importance of Circ0009910 in colorectal cancer pathogenesis as a possible regulator of miR-145 and PEAK1

description: Additional file 2: Supplementary Table 2.
DOI: 10.6084/m9.figshare.16570226
title: Additional file 1 of Growth performances, gastrointestinal epithelium and bacteria responses of Yellow-feathered chickens to kudzu-leaf flavonoids supplement

description: Additional file 1: Table S1. Taxonomy results of cecal bacterial community.
DOI: 10.6084/m9.figshare.16570226.v1
title: Additional file 1 of Growth performances, gastrointestinal epithelium and bacteria responses of Yellow-feathered chickens to kudzu-leaf flavonoids supplement

description: Additional file 1: Table S1. Taxonomy results of cecal bacterial community.
DOI: 10.6084/m9.figshare.16570216
title: Additional file 1 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 1.
DOI: 10.6084/m9.figshare.16570216.v1
title: Additional file 1 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 1.
DOI: 10.6084/m9.figshare.16570222
title: Additional file 2 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 2.
DOI: 10.6084/m9.figshare.16570222.v1
title: Additional file 2 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 2.
DOI: 10.6084/m9.figshare.16570225
title: Additional file 3 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 3.
DOI: 10.6084/m9.figshare.16570225.v1
title: Additional file 3 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 3.
DOI: 10.6084/m9.figshare.16570228
title: Additional file 4 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 4.
DOI: 10.6084/m9.figshare.16570228.v1
title: Additional file 4 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 4.
DOI: 10.6084/m9.figshare.16570231
title: Additional file 5 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 5.
DOI: 10.6084/m9.figshare.16570231.v1
title: Additional file 5 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 5.
DOI: 10.6084/m9.figshare.16570234.v1
title: Additional file 6 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 6.
DOI: 10.6084/m9.figshare.16570237
title: Additional file 7 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 7.
DOI: 10.6084/m9.figshare.16570234
title: Additional file 6 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 6.
DOI: 10.6084/m9.figshare.16570237.v1
title: Additional file 7 of Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages

description: Additional file 7.
DOI: 10.6084/m9.figshare.16570288
title: Additional file 1 of An overview of genes and mutations associated with Chlamydiae species’ resistance to antibiotics

description: Additional file 1. Details of the extracted data from the retrieved studies.
DOI: 10.6084/m9.figshare.16570288.v1
title: Additional file 1 of An overview of genes and mutations associated with Chlamydiae species’ resistance to antibiotics

description: Additional file 1. Details of the extracted data from the retrieved studies.
DOI: 10.6084/m9.figshare.16570294.v1
title: Additional file 2 of Readiness to provide child health services in rural Uttar Pradesh, India: mapping, monitoring and ongoing supportive supervision

description: Additional file 2.
DOI: 10.6084/m9.figshare.16570297
title: Additional file 3 of Readiness to provide child health services in rural Uttar Pradesh, India: mapping, monitoring and ongoing supportive supervision

description: Additional file 3.
DOI: 10.6084/m9.figshare.16570294
title: Additional file 2 of Readiness to provide child health services in rural Uttar Pradesh, India: mapping, monitoring and ongoing supportive supervision

description: Additional file 2.
DOI: 10.6084/m9.figshare.16570297.v1
title: Additional file 3 of Readiness to provide child health services in rural Uttar Pradesh, India: mapping, monitoring and ongoing supportive supervision

description: Additional file 3.
DOI: 10.5287/bodleianjnbz.2
title: Hand grenade lecture notes by Lance Corporal Robert Rafton (45)

description: A handwritten notebook containing notes written by Lance Corporal Robert Rafton (Service Number 2090) of the East Riding Yeomanry about a lecture on hand grenades. The book includes information about topics including explosives, trench catapults, the West Spring Gun, and the Stokes Gun, and is illustrated with diagrams. Part of a collection relating to Robert Rafton, deposited by his great-niece.
DOI: 10.5287/bodleianjqpc.2
title: Wharton Rye Collinge's Wallet

description: Wharton Rye Collinge's Wallet with photo of Ella, pen, money and medals.

Editor's Comment:
50 Centime note, dated 1917, 5 Franc note, War and Victory Medals, pen, photograph, contained in black pigskin wallet with initials W.R.C.

Lieutenant Wharton Rye Collinge, 2nd/6th (Rifle) Bn. The King's (Liverpool Regiment), died of gas poisoning 7th August 1917 and is buried in Merville Communal Cemetery.
DOI: 10.5287/bodleianjrxi.2
title: William Cranston - 3rd Bn. Machine Gun Corps Journal (1)

description: Articles from the magazine of the 3rd Bn Machine Gun Corps, issue no 1, May 1919.  I have 100 pages of the originals of issues 1-6 with many descriptions of actions in the Great War and accounts of regimental life.

Editor's Comment:
'Honorary Editor, Lt.-Colonel W. J. Cranston. D.S.O.'. Cartoon portrait of Lt.-Col. Cranston facing prefatory material, with an article 'The Chronicles of the 3rd Bn. M.G.C.  | No. 1 | Arras | March 21-28 1918'.

Second Lieutenant (acting Lieutenant Colonel) William James Cranston DSO, Royal Scots Fusiliers and Staff, served additionally in the North Staffordshire Regiment and commanded the 13th Bn. King's Liverpool Regiment and 3rd Bn. Machine Gun Corps.
DOI: 10.5287/bodleianjs21.2
title: Postcard sent by Lambert Fell, Yorkshire Regiment (1)

description: These items were given to me by my late mother.
The postcard/ birthday card was from my grandfather LAMBERT FELL who was a 2nd Lieutenant to my mother for her birthday on 11th May.
The 2 daggers have been hand made.
1. Appears that the handle is made from old shell cartridges.
2. Has SOMME crudely engraved.

Editor's Comment:
Acting Serjeant 21164 Lambert Fell, Yorkshire Regiment (Green Howards), later Temporary Seond Lieutenant, Labour Corps (Comissioned 2nd April, 1918).
DOI: 10.5287/bodleiankhy.2
title: Hand grenade lecture notes by Lance Corporal Robert Rafton (43)

description: A handwritten notebook containing notes written by Lance Corporal Robert Rafton (Service Number 2090) of the East Riding Yeomanry about a lecture on hand grenades. The book includes information about topics including explosives, trench catapults, the West Spring Gun, and the Stokes Gun, and is illustrated with diagrams. Part of a collection relating to Robert Rafton, deposited by his great-niece.
DOI: 10.5287/bodleiannes.2
title: Field Regulations

description: Editor's Comment:
'Field Service Regulations Part II: An Addendum for the guidance of troops operating in France and Belgium', 1917.

From the effects of Lieutenant Wharton Rye Collinge, 2nd/6th (Rifle) Bn. The King's (Liverpool Regiment), who died of gas poisoning 7th August 1917 and is buried in Merville Communal Cemetery.
DOI: 10.5287/bodleianotm.2
title: William Cranston, aerial photos (2)

description: Aerial photos of trenches and lines - France 1916.

Editor's Comment:
Second Lieutenant (acting Lieutenant Colonel) William James Cranston DSO, Royal Scots Fusiliers and Staff, served additionally in the North Staffordshire Regiment and commanded the 13th Bn. King's Liverpool Regiment and 3rd Bn. Machine Gun Corps.
DOI: 10.5287/bodleianq23.2
title: Bank note, possibly Bulgarian (1)

description: Private Wood joined the Royal Scots in September 1914 and is believed to have served in Salonica, Greece.