cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2jd8d7dtcn.1
title: Maternal and Child Biomarkers

description: We hypothesized that in this cohort: 1. Maternal nutritional status is associated with maternal biomarkers; 2. Maternal supplementation influenced maternal biomarkers; 3. Maternal biomarkers are associated with child biomarkers; 4. Child biomarkers are associated with child health outcomes
DOI: 10.17632/gp986ycb4g.1
title: Different silver species incorporated in PAN nanofibers

description: Different silver species incorporated in polyacrylonitrile nanofibers and their antibacterial activities
DOI: 10.25606/surf.578c6039-146c70a2
title: The Cosmogrid Simulation: Statistical Properties of Small Dark Matter Halos (2048-550)

description: We present the results of the "Cosmogrid" cosmological N-body simulation suites based on the concordance LCDM model. The Cosmogrid simulation was performed in a 30 Mpc box with 2048³ particles. The mass of each particle is 1.28x10^5 Msun, which is sufficient to resolve ultra-faint dwarfs. We found that the halo mass function shows good agreement with the Sheth & Tormen fitting function down to ~10^7 Msun. We have analyzed the spherically averaged density profiles of the three most massive halos which are of galaxy group size and contain at least 170 million particles. The slopes of these density profiles become shallower than -1 at the inner most radius. We also find a clear correlation of halo concentration with mass. The mass dependence of the concentration parameter cannot be expressed by a single power law, however a simple model based on the Press-Schechter theory proposed by Navarro et al. gives reasonable agreement with this dependence. The spin parameter does not show a correlation with the halo mass. The probability distribution functions for both concentration and spin are well fitted by the log-normal distribution for halos with the masses larger than ~10^8 Msun. The subhalo abundance depends on the halo mass. Galaxy-sized halos have 50% more subhalos than ~10^11 Msun halos have. This is snapshot 550 of the 2048³ resolution collection.
DOI: 10.25606/surf.578c6039-5c38e06e
title: The Cosmogrid Simulation: Statistical Properties of Small Dark Matter Halos (2048-545)

description: We present the results of the "Cosmogrid" cosmological N-body simulation suites based on the concordance LCDM model. The Cosmogrid simulation was performed in a 30 Mpc box with 2048³ particles. The mass of each particle is 1.28x10^5 Msun, which is sufficient to resolve ultra-faint dwarfs. We found that the halo mass function shows good agreement with the Sheth & Tormen fitting function down to ~10^7 Msun. We have analyzed the spherically averaged density profiles of the three most massive halos which are of galaxy group size and contain at least 170 million particles. The slopes of these density profiles become shallower than -1 at the inner most radius. We also find a clear correlation of halo concentration with mass. The mass dependence of the concentration parameter cannot be expressed by a single power law, however a simple model based on the Press-Schechter theory proposed by Navarro et al. gives reasonable agreement with this dependence. The spin parameter does not show a correlation with the halo mass. The probability distribution functions for both concentration and spin are well fitted by the log-normal distribution for halos with the masses larger than ~10^8 Msun. The subhalo abundance depends on the halo mass. Galaxy-sized halos have 50% more subhalos than ~10^11 Msun halos have. This is snapshot 545 of the 2048³ resolution collection.
DOI: 10.25606/surf.578c6039-a974d07b
title: The Cosmogrid Simulation: Statistical Properties of Small Dark Matter Halos (2048-585)

description: We present the results of the "Cosmogrid" cosmological N-body simulation suites based on the concordance LCDM model. The Cosmogrid simulation was performed in a 30 Mpc box with 2048³ particles. The mass of each particle is 1.28x10^5 Msun, which is sufficient to resolve ultra-faint dwarfs. We found that the halo mass function shows good agreement with the Sheth & Tormen fitting function down to ~10^7 Msun. We have analyzed the spherically averaged density profiles of the three most massive halos which are of galaxy group size and contain at least 170 million particles. The slopes of these density profiles become shallower than -1 at the inner most radius. We also find a clear correlation of halo concentration with mass. The mass dependence of the concentration parameter cannot be expressed by a single power law, however a simple model based on the Press-Schechter theory proposed by Navarro et al. gives reasonable agreement with this dependence. The spin parameter does not show a correlation with the halo mass. The probability distribution functions for both concentration and spin are well fitted by the log-normal distribution for halos with the masses larger than ~10^8 Msun. The subhalo abundance depends on the halo mass. Galaxy-sized halos have 50% more subhalos than ~10^11 Msun halos have. This is snapshot 585 of the 2048³ resolution collection.
DOI: 10.25606/surf.578c6039-bad8d567
title: The Cosmogrid Simulation: Statistical Properties of Small Dark Matter Halos (2048-553)

description: We present the results of the "Cosmogrid" cosmological N-body simulation suites based on the concordance LCDM model. The Cosmogrid simulation was performed in a 30 Mpc box with 2048³ particles. The mass of each particle is 1.28x10^5 Msun, which is sufficient to resolve ultra-faint dwarfs. We found that the halo mass function shows good agreement with the Sheth & Tormen fitting function down to ~10^7 Msun. We have analyzed the spherically averaged density profiles of the three most massive halos which are of galaxy group size and contain at least 170 million particles. The slopes of these density profiles become shallower than -1 at the inner most radius. We also find a clear correlation of halo concentration with mass. The mass dependence of the concentration parameter cannot be expressed by a single power law, however a simple model based on the Press-Schechter theory proposed by Navarro et al. gives reasonable agreement with this dependence. The spin parameter does not show a correlation with the halo mass. The probability distribution functions for both concentration and spin are well fitted by the log-normal distribution for halos with the masses larger than ~10^8 Msun. The subhalo abundance depends on the halo mass. Galaxy-sized halos have 50% more subhalos than ~10^11 Msun halos have. This is snapshot 553 of the 2048³ resolution collection.
DOI: 10.25606/surf.578c6039-e813b3e9
title: The Cosmogrid Simulation: Statistical Properties of Small Dark Matter Halos (2048-551)

description: We present the results of the "Cosmogrid" cosmological N-body simulation suites based on the concordance LCDM model. The Cosmogrid simulation was performed in a 30 Mpc box with 2048³ particles. The mass of each particle is 1.28x10^5 Msun, which is sufficient to resolve ultra-faint dwarfs. We found that the halo mass function shows good agreement with the Sheth & Tormen fitting function down to ~10^7 Msun. We have analyzed the spherically averaged density profiles of the three most massive halos which are of galaxy group size and contain at least 170 million particles. The slopes of these density profiles become shallower than -1 at the inner most radius. We also find a clear correlation of halo concentration with mass. The mass dependence of the concentration parameter cannot be expressed by a single power law, however a simple model based on the Press-Schechter theory proposed by Navarro et al. gives reasonable agreement with this dependence. The spin parameter does not show a correlation with the halo mass. The probability distribution functions for both concentration and spin are well fitted by the log-normal distribution for halos with the masses larger than ~10^8 Msun. The subhalo abundance depends on the halo mass. Galaxy-sized halos have 50% more subhalos than ~10^11 Msun halos have. This is snapshot 551 of the 2048³ resolution collection.
DOI: 10.5281/zenodo.2652239
title: 0.3 ms of asymmetric GM1:POPC/POPC (2:98/100) bilayer

description: Cone-like GM1. Fourth 25 microseconds of total 300 microseconds.
DOI: 10.5281/zenodo.2652578
title: Uncertainty Quantification in Multivariate Mixed Models for Mass Cytometry Data (Processed Data)

description: Processed data computed using R packages CytoGLMM and cytoeffect. Raw data available here.
DOI: 10.17632/5hkxztmpkv.1
title: Coevolution of residues provides evidence of a functional heterodimer of 5-HT2AR and 5-HT2CR involving both intracellular and extracellular domains

description: Supplementary files for the paper: Coevolution of residues provides evidence of a functional heterodimer of 5-HT2AR and 5-HT2CR involving both intracellular and extracellular domains
DOI: 10.17632/5hkxztmpkv.2
title: Coevolution of residues provides evidence of a functional heterodimer of 5-HT2AR and 5-HT2CR involving both intracellular and extracellular domains

description: Supplementary files for the paper: Coevolution of residues provides evidence of a functional heterodimer of 5-HT2AR and 5-HT2CR involving both intracellular and extracellular domains
DOI: 10.17632/d7jk36hhyy.1
title: Impacts of rodent eradication on seed predation and plant community biomass

description: Island ecosystems have experienced massive biodiversity loss, and invasive species, in particular rodents, are responsible for much of this loss (~15%). Rodent eradications have led to the recovery of over 100 island vertebrates and their ecological roles. While the focus of most eradication efforts has been vertebrate recovery, rodents are generalists that predominantly eat seeds and fruit. However, there has been limited work on the effects of rodent eradication on plant communities and plant-mediated ecological processes. In this study, we conducted repeated surveys of seed, juvenile, and adult tree abundance and survival in permanent vegetation plots across an islet network (Palmyra Atoll) in the Central Tropical Pacific, before and after the eradication of black rats (Rattus rattus). Our aim was to examine the role of seed predation on tree communities and biomass. We observed an 84% decrease in seed predation of an introduced foundational species (the coconut palm, Cocos nucifera), and a 14-fold increase in juvenile tree biomass in all species following eradication. Juvenile C. nucifera abundance increased 2-5 times more than other tree species, leading to a 10% increase in population growth rate and a 4-fold increase in adult tree biomass accumulation over the next tree generation. We conclude that rodents can have nuanced impacts on island ecosystems, including facilitation of other invasive species and alteration of ecosystem functions such as carbon and nutrient cycling and storage. Future eradication efforts need to incorporate plant responses, since plants can shape post-eradication recovery trajectories. These data include census data from permanent vegetation plots on Palmyra Atoll, data used to determine community biomass from these plots, maps of Palmyra Atoll and the vegetation plot locations, and statistical tests used to determine changes in stages and vital rates for tree species in the permanent vegetation plots.
DOI: 10.5258/soton/d0859
title: Dataset and Vortex model code for paper titled "Effects of vortex-induced velocity on the development of a synthetic jet issuing into a turbulent boundary layer"

description: This dataset presents the experimental data described in:Tim Berk and Bharathram Ganapathisubramani, "Effects of vortex-induced velocity on the development of a synthetic jet issuing into a turbulent boundary layer", Journal of Fluid Mechanics, 2019. DOI:10.1017/jfm.2019.279Please cite the above-mentioned paper if you use the data or the matlab code that provides the vortex model for the synthetic jet in cross-flow.The data is presented for each figure containing important data in the paper (filenames are given accordingly). Data for figures 2, 3, 7, 13, 15, 20, 21 and 22 is provided in XML spreadsheet files (.xlsx). Using the data provided and normalisation parameters (where applicable), the plots in the paper could be reproduced. Units of the data are given in the data files. Velocity fields, as used in figures 5, 6, 9, 10, 11, 12, 17, 18 and 19 are provided as Matlab files (.mat). Units of this data are given in each variable name. 'Velocity_fields_x1delta.mat' provides velocity in a cross-stream - wall-normal plane located at x/delta = 1. 'Velocity_fields_x3delta.mat' provides velocity in a cross-stream - wall-normal plane located at x/delta = 3. 'Velocity_fields_z0.mat' provides velocity in a streamwise - wall-normal plane located at z/delta = 0.
DOI: 10.5281/zenodo.2652233
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by David Shorthouse and deposited, https://orcid.org/000-0001-7618-5230. Claims made on Bloodhound, https://bloodhound-tracker.net.
DOI: 10.5281/zenodo.2652234
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by David Shorthouse and deposited, https://orcid.org/000-0001-7618-5230. Claims made on Bloodhound, https://bloodhound-tracker.net.
DOI: 10.17632/2syf6hwhz4.1
title: Source Data for "Harnessing hematopoietic stem cell low intracellular calcium improves their maintenance in vitro"

description: The source data for ~70 panels of data used to compute statistical significance in the paper.
DOI: 10.17632/fkdp5y6xt3.1
title: Estimation of geostrophic current in the Red Sea based on sea level anomalies derived from extended satellite altimetry data

description: This work was achieved good results for sea level and surface geostrophic currents near the coast. This research was carried out because of gaps in the sea level data and surface geostrophic currents data near the Red Sea coast.
DOI: 10.17632/fkdp5y6xt3.2
title: Estimation of geostrophic current in the Red Sea based on sea level anomalies derived from extended satellite altimetry data

description: This work was achieved good results for sea level and surface geostrophic currents near the coast. This research was carried out because of gaps in the sea level data and surface geostrophic currents data near the Red Sea coast.
DOI: 10.18716/nmrshiftdb2/60000005
title: NMR data for (-)-Carvone; (R)-2-methyl-5-(methylethenyl)-2-cyclohexen-1-one; (R)-5-Isopropenyl-2-methyl-2-cyclohexenone; (R)-Carvone; Carvol; L-Carvone; p-Mentha-6,8-dien-2-one
DOI: 10.18716/nmrshiftdb2/60000007
title: NMR data for 3-O-Acetyl-11-keto--boswelliasure
DOI: 10.18716/nmrshiftdb2/60000007/chiuz_cdcl3
title: ChiuZ NMR dataset for 3-O-Acetyl-11-keto--boswelliasure in Chloroform-D1 (CDCl3)
DOI: 10.18716/nmrshiftdb2/60000005/chiuz_cdcl3
title: ChiuZ NMR dataset for (-)-Carvone; (R)-2-methyl-5-(methylethenyl)-2-cyclohexen-1-one; (R)-5-Isopropenyl-2-methyl-2-cyclohexenone; (R)-Carvone; Carvol; L-Carvone; p-Mentha-6,8-dien-2-one in Chloroform-D1 (CDCl3)
DOI: 10.25934/00003088.1
title: IPD datapackage for study 'A Phase 3, Open-Label Study of the Safety and Efficacy of Adalimumab in Subjects With Moderate to Severe Hidradenitis Suppurativa - PIONEER (Open-Label Extension)' included in Research Request: 'Predictors of Treatment Response, Adverse Events, Changes in Anaemia status and Assessment of Lesion Count Variability in Hidradenitis Suppurativa'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5281/zenodo.2652211
title: 0.3 ms of asymmetric GM1:POPC/POPC (2:98/100) bilayer

description: Cone-like GM1. First 25 microseconds of total 300 microseconds.
DOI: 10.25919/5cc43e8ed235f
title: Parkes observations for project P958 semester 2019APRS_12

description: Fast radio bursts (FRBs) continue to raise more questions than they answer. Until a few months ago, only one burst – the only one known to repeat -  had been localized to a bright radio nebula (either a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy.   
Over the last year searches with the Australian Square Kilometre Array Pathfinder (ASKAP) have detected 28 bursts, two of which have been localised to host galaxies at redshifts &gt; 0.3. These bursts and their hosts are very unlike the repeater, suggesting there may be a dichotomy in the population.  Over the next six months we expect to detect another 12 FRBs, which will also have sub-arcsecond localisations.   Here we propose to search this population for repeats.  Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections, will either confirm the presence of additional repeating FRBs or the uniqueness of FRB 121102 amongst the population.
DOI: 10.15139/s3/gm7bvm
title: Replication Data for: Wlezien and Jennings (2018): Election Polling Errors Across Time and Space

description: My replication project for Poli 784. Contains the original article, my replication and extension document (pdf), the raw data, and the replication code (.R).
DOI: 10.25919/5cc2f53e1cc3c
title: Parkes observations for project P985 semester 2019APRS_01

description: We propose to use the ultra-wide-bandwidth, low frequency receiver installed at the Parkes telescope in order to quantify the broad-band intermittency time scale, polarization, quasi-periodicities, and mode changing of a newly discovered pulsar, PSR J1926-0653. The pulsar is unique in its emission properties. It has multiple pulse components, that change with time (both mode- changing and sub-pulse drifting phenomena are evident). The pulsar exhibits nulls in which a few individual pulses seem to be missing. It also exhibits longer-scale (hour-scale) intermittency behaviour in which the emission switches off for long periods of time. The pulse flux densities often, but not always, seem to exhibit quasi-periodic variations. Clearly this pulsar may hold the key to many different emission phenomena and we request time on Parkes, FAST and ATCA to parameterise the pulsar and its emission properties in detail.
DOI: 10.5281/zenodo.2652277
title: Dataset for DeepChrome and AttentiveChrome

description: Dataset for the following papers:

<strong>DeepChrome: Deep Learning for Predicting Gene Expression from Histone Modifications </strong><br>
Ritambhara Singh, Jack Lanchantin, Gabriel Robins, Yanjun Qi <br>
European Conference on Computational Biology (ECCB) 2016 - The Hague, Netherlands

<strong>Attend and Predict: Understanding Gene Regulation by Selective Attention on Chromatin</strong> <br>
Ritambhara Singh, Jack Lanchantin, Arshdeep Sekhon, Yanjun Qi <br>
Advances in Neural Information Processing Systems (NIPS) 2017 - Long Beach, CA
DOI: 10.5281/zenodo.2652278
title: Dataset for DeepChrome and AttentiveChrome

description: Dataset for the following papers:

<strong>DeepChrome: Deep Learning for Predicting Gene Expression from Histone Modifications </strong><br>
Ritambhara Singh, Jack Lanchantin, Gabriel Robins, Yanjun Qi <br>
European Conference on Computational Biology (ECCB) 2016 - The Hague, Netherlands

<strong>Attend and Predict: Understanding Gene Regulation by Selective Attention on Chromatin</strong> <br>
Ritambhara Singh, Jack Lanchantin, Arshdeep Sekhon, Yanjun Qi <br>
Advances in Neural Information Processing Systems (NIPS) 2017 - Long Beach, CA
DOI: 10.5519/qd.4o0whr6v
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2349 records)
DOI: 10.5281/zenodo.2652588
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by David Shorthouse and deposited, https://orcid.org/000-0001-7618-5230. Claims made on Bloodhound, https://bloodhound-tracker.net.
DOI: 10.5517/ccdc.csd.cc203txw
title: CCDC 1850728: Experimental Crystal Structure Determination

description: Related Article: Qian Liu, Richard F. Jordan|2019|J.Am.Chem.Soc.|141|6827|doi:10.1021/jacs.9b02465
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20djgf
title: CCDC 1859084: Experimental Crystal Structure Determination

description: Related Article: Shanshan Du,  Jimin Yang,  Jingyuan Hu,  Zhengqi Chai,  Gen Luo,  Yi Luo,  Wen-Xiong Zhang,  Zhenfeng Xi|2019|J.Am.Chem.Soc.|141|6843|doi:10.1021/jacs.9b02628
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20djhg
title: CCDC 1859085: Experimental Crystal Structure Determination

description: Related Article: Shanshan Du,  Jimin Yang,  Jingyuan Hu,  Zhengqi Chai,  Gen Luo,  Yi Luo,  Wen-Xiong Zhang,  Zhenfeng Xi|2019|J.Am.Chem.Soc.|141|6843|doi:10.1021/jacs.9b02628
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20djjh
title: CCDC 1859086: Experimental Crystal Structure Determination

description: Related Article: Shanshan Du,  Jimin Yang,  Jingyuan Hu,  Zhengqi Chai,  Gen Luo,  Yi Luo,  Wen-Xiong Zhang,  Zhenfeng Xi|2019|J.Am.Chem.Soc.|141|6843|doi:10.1021/jacs.9b02628
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20djkj
title: CCDC 1859087: Experimental Crystal Structure Determination

description: Related Article: Shanshan Du,  Jimin Yang,  Jingyuan Hu,  Zhengqi Chai,  Gen Luo,  Yi Luo,  Wen-Xiong Zhang,  Zhenfeng Xi|2019|J.Am.Chem.Soc.|141|6843|doi:10.1021/jacs.9b02628
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20djlk
title: CCDC 1859088: Experimental Crystal Structure Determination

description: Related Article: Shanshan Du,  Jimin Yang,  Jingyuan Hu,  Zhengqi Chai,  Gen Luo,  Yi Luo,  Wen-Xiong Zhang,  Zhenfeng Xi|2019|J.Am.Chem.Soc.|141|6843|doi:10.1021/jacs.9b02628
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.