cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2064498.v1
title: Raman spectroscopy detects melanoma and the tissue surrounding melanoma using tissue-engineered melanoma models

description: Invasion of melanoma cells from the primary tumor involves interaction with adjacent tissues and extracellular matrix. The extent of this interaction is not fully understood. In this study Raman spectroscopy was applied to cryo-sections of established 3D models of melanoma in human skin. Principal component analysis was used to investigate differences between the tumor and normal tissue and between the peri-tumor area and the normal skin. Two human melanoma cells lines A375SM and C8161 were investigated and compared in 3D melanoma models. Changes were found in protein conformations and tryptophan configurations across the entire melanoma samples, in tyrosine orientation and in more fluid lipid packing only in tumor dense areas, and in increased glycogen content in the peri-tumor areas of melanoma. Raman spectroscopy revealed changes around the perimeter of a melanoma tumor as well as detecting differences between the tumor and the normal tissue.
DOI: 10.6084/m9.figshare.2064357
title: Repeated local emergence of carbapenem resistant Acinetobacter baumannii in a single hospital ward

description: Supplementary table as published in <em>Microbial Genomics</em> in the following article: 'Repeated local emergence of carbapenem resistant Acinetobacter baumannii in a single hospital ward' [DOI:10.1099/mgen.0.000050]
DOI: 10.6084/m9.figshare.2064345
title: Thesis data and scripts

description: This data was used in the Thesis "Genetic and genomic approaches to the conservation of the threatened crucian carp Carassius carassius (L.); phylogeography, hybridisation and introgression" by Daniel L Jeffries, supervised by Dr. Bernd Haenfling, Dr. Lori Lawson-Handley and Prof. Gordon Copp at the university of Hull. <br>The data in this package consits of microsatellite data for over 1300 fish, RADseq data for approx 240 fish and mtDNA (<i>cyt</i>b) data for approximately 100 fish from the genus <i>Carassius or Cyprinus. </i><i><br></i>Intermediate files and scripts are also included for the analyses described in the thesis, including basic population genetics and DAPC population structure analyses carried out in R using the adegenet package, DIYABC analyses, mtDNA phylogenetic analyses, and RADseq data processing and and downstream analyses using NewHybrids and Treemix.
DOI: 10.6084/m9.figshare.2064345.v1
title: Thesis data and scripts

description: This data was used in the Thesis "Genetic and genomic approaches to the conservation of the threatened crucian carp Carassius carassius (L.); phylogeography, hybridisation and introgression" by Daniel L Jeffries, supervised by Dr. Bernd Haenfling, Dr. Lori Lawson-Handley and Prof. Gordon Copp at the university of Hull. <br>The data in this package consits of microsatellite data for over 1300 fish, RADseq data for approx 240 fish and mtDNA (<i>cyt</i>b) data for approximately 100 fish from the genus <i>Carassius or Cyprinus. </i><i><br></i>Intermediate files and scripts are also included for the analyses described in the thesis, including basic population genetics and DAPC population structure analyses carried out in R using the adegenet package, DIYABC analyses, mtDNA phylogenetic analyses, and RADseq data processing and and downstream analyses using NewHybrids and Treemix.
DOI: 10.6084/m9.figshare.2064285
title: Data sets for "Incomplete protection against dengue virus type 2 re-infection in Peru"

description: Data associated with the manuscript "Incomplete protection against dengue virus type 2 re-infection in Peru" in PLOS Neglected Tropical diseases
DOI: 10.6084/m9.figshare.2064285.v1
title: Data sets for "Incomplete protection against dengue virus type 2 re-infection in Peru"

description: Data associated with the manuscript "Incomplete protection against dengue virus type 2 re-infection in Peru" in PLOS Neglected Tropical diseases
DOI: 10.6084/m9.figshare.2064258
title: MLMI Praktikum Report - Multi Modal Similarity

description: Different imaging modalities show different information. In medical diagnosis as well as in many image recognition tasks, we need to align the images to have all the information concentrated at each point. The bone of contention is to define a similarity measure for aligning images. Out of the many approaches and algorithms to measure similarity of objects, in this report, we intend to demonstrate two approaches for similarity measurement of 2-D brain images, namely clustering by fast search and find of density peaks and forests of extremely randomized binary trees.
DOI: 10.6084/m9.figshare.2064237
title: TXM Sample Frames

description: Sample X-ray microscopy data for development of scimap mapping software: https://github.com/m3wolf/scimap
DOI: 10.6084/m9.figshare.2064258.v2
title: MLMI Praktikum Report - Multi Modal Similarity

description: Different imaging modalities show different information. In medical diagnosis as well as in many image recognition tasks, we need to align the images to have all the information concentrated at each point. The bone of contention is to define a similarity measure for aligning images. Out of the many approaches and algorithms to measure similarity of objects, in this report, we intend to demonstrate two approaches for similarity measurement of 2-D brain images, namely clustering by fast search and find of density peaks and forests of extremely randomized binary trees.
DOI: 10.6084/m9.figshare.2064234
title: Dataset for publication "Survival during the breeding season: nest stage, parental sex, and season advancement affect reed warbler survival" by Wierucka et al.

description: Dataset provided as a part of the publication "Survival during the breeding season: nest stage, parental sex, and season advancement affect reed warbler survival" by Wierucka et al.; DOI: 10.1371/journal.pone.0148063
DOI: 10.6084/m9.figshare.2064165
title: NEI-C10_4cycles_C14.mpt

description: This is a test file containing electrochemistry data for the python library scimap
DOI: 10.6084/m9.figshare.2064234.v1
title: Dataset for publication "Survival during the breeding season: nest stage, parental sex, and season advancement affect reed warbler survival" by Wierucka et al.

description: Dataset provided as a part of the publication "Survival during the breeding season: nest stage, parental sex, and season advancement affect reed warbler survival" by Wierucka et al.; DOI: 10.1371/journal.pone.0148063
DOI: 10.6084/m9.figshare.2064237.v1
title: TXM Sample Frame

description: Sample X-ray microscopy data for development of scimap mapping software: https://github.com/m3wolf/scimap
DOI: 10.6084/m9.figshare.2064150
title: 217Jun26-Jul14_2014_EST.txt

description: Test
DOI: 10.6084/m9.figshare.2064162
title: NEI-C10-4cycles_C14.mpr

description: This is a test file containing electrochemistry data for the python library scimap
DOI: 10.6084/m9.figshare.2064165.v1
title: NEI-C10_4cycles_C14.mpt

description: This is a test file containing electrochemistry data for the python library scimap
DOI: 10.6084/m9.figshare.2064150.v1
title: 217Jun26-Jul14_2014_EST.txt

description: Test
DOI: 10.6084/m9.figshare.2064162.v1
title: NEI-C10-4cycles_C14.mpr

description: This is a test file containing electrochemistry data for the python library scimap
DOI: 10.6084/m9.figshare.2064237.v2
title: TXM Sample Frames

description: Sample X-ray microscopy data for development of scimap mapping software: https://github.com/m3wolf/scimap
DOI: 10.6084/m9.figshare.2064237.v3
title: TXM Sample Frames

description: Sample X-ray microscopy data for development of scimap mapping software: https://github.com/m3wolf/scimap
DOI: 10.6084/m9.figshare.2064237.v4
title: TXM Sample Frames

description: Sample X-ray microscopy data for development of scimap mapping software: https://github.com/m3wolf/scimap
DOI: 10.6084/m9.figshare.2064237.v5
title: TXM Sample Frames

description: Sample X-ray microscopy data for development of scimap mapping software: https://github.com/m3wolf/scimap
DOI: 10.6084/m9.figshare.2064072
title: Biologically inspired methods in speech recognition and synthesis: closing the loop

description: Cached results of running the experiments described and implemented in my PhD thesis, "Biologically inspired methods in speech recognition and synthesis: closing the loop." Placing these files in the directory cloned from https://github.com/tbekolay/phd allows the plots to be reproduced as submitted in the original thesis submission.
DOI: 10.6084/m9.figshare.2064069
title: Twits per minute, 20N elections in Spain

description: A set of tuits of a few hours during a day, 26 Oct 2011. These were tuits that either mentioned Rajoy or Rubalcaba. The set includes files with times for all tuits, and processed number of tuits, total and per minute.<br>
DOI: 10.6084/m9.figshare.2064051
title: PONE-D-15-52581

description: CzeekV data
DOI: 10.6084/m9.figshare.2064072.v2
title: Biologically inspired methods in speech recognition and synthesis: closing the loop

description: Cached results of running the experiments described and implemented in my PhD thesis, "Biologically inspired methods in speech recognition and synthesis: closing the loop." Placing these files in the directory cloned from https://github.com/tbekolay/phd allows the plots to be reproduced as submitted in the original thesis submission.
DOI: 10.6084/m9.figshare.2064069.v1
title: Twits per minute, 20N elections in Spain

description: A set of tuits of a few hours during a day, 26 Oct 2011. These were tuits that either mentioned Rajoy or Rubalcaba. The set includes files with times for all tuits, and processed number of tuits, total and per minute.<br>
DOI: 10.6084/m9.figshare.2064051.v1
title: PONE-D-15-52581

description: CzeekV data
DOI: 10.6084/m9.figshare.2063946
title: GENOMIC AND METABOLOMIC PROFILE ASSOCIATED TO CLUSTERING OF CARDIO-METABOLIC RISK FACTORS

description: the sample included individuals older than 18 years in the absence of serious concomitantdisease or psychiatric disorder, which could interfere with the study. All the subjectsincluded were white, living in an area with a low immigration rate.<br>The study included the assessment of anthropometric measurements, blood pressure, glycaemia, lipid profile and smoking status as well as personal and familial information<br>about cardiovascular risk factors and disease. Cardiometabolic risk factors were iidentified, according to the ATPIII criteria used for MS ], and MS was defined by the presence of three or more of the following components: 1) high waist circumference(men ≥ 102cm; women ≥88 cm); 2) high triglycerides (≥150mg/dL); 3) low HDL<br>cholesterol (men ≥ 40mg/dL; women ≥50mg/dL); 4) high blood pressure (systolic blood<br>pressure ≥130 mmHg and/or diastolic blood pressure ≥ 85 mmHg or being on<br>antihypertensive medications) and 5) high fasting glucose (≥ 110 mg/dL or being on drug treatment for elevated glucose). The subjects were divided into three groups:<br>Group 1 comprised of 617 subjects with less than two risk criteria of the ATPIIguideline; Group 2 comprised of 295 subjects with 2 risk factors and Group 3 comprised of 283 subjects with 3 or more of the criteria, which is considered to be MS.Weight was assessed with precise scales while the individuals were without shoes and<br>wearing light clothing. Height was determined in a similar way. Body mass index (BMI) was calculated using the following formula "weight (kg)/height2 (m)". Glucose<br>and lipid profile was measured in blood samples obtained with a mean of 3 hoursfasting (range 0-17). Basic serum biochemistry and lipid profile.Differences in the 28 metabolite values for each SNP in patients from Group 1 and Group 3 of each genotype were calculated. Finally, the metabolic profile and the most relevant metabolites of 5<br>genotype and allele were compared between patients from Group 1 and Group 3. The data were co-variated with respect to age, sex and smoking status. Bonferroni correctionwas applied in all the analysis<br><br>
DOI: 10.6084/m9.figshare.2064048
title: Proposta di alcuni nuovi strumenti per comprendere la logica dei processi cognitivi e per superare alcuni limiti dell’attuale approccio al deep-learning

description: Le attuali tecniche per gestire l’apprendimento di agenti intelligenti, composti da reti neurali profonde, hanno mostrato una sorprendente efficacia se applicate ad ambienti di complessità limitata (V. Mnih, D. Hassabis & alt. Nature 2015). Ma esse non sembrano direttamente applicabili per costruire un vero sistema cognitivo che sia in grado di operare in una ambiente complesso come il mondo che ci circonda. In questo lavoro propongo un nuovo approccio alla cognizione che, partendo da un’analisi dei suoi fondamenti, ricava importanti indicazioni per comprendere alcuni aspetti particolarmente importanti della logica generale dei processi cognitivi naturali. Queste idee forniscono degli strumenti che consentono di proporre un modello generale della cognizione e di stendere il progetto per la realizzazione di sistemi cognitivi artificiali potenzialmente capaci di forme di intelligenza avanzata. Grazie a questi strumenti appare possibile scomporre il problema complessivo della realizzazione di un sistema cognitivo in un insieme di sotto-problemi. Questi ultimi appaiono sostanzialmente già affrontabili con le tecniche sviluppate recentemente nel campo del deep-learning.
DOI: 10.6084/m9.figshare.2064072.v1
title: Biologically inspired methods in speech recognition and synthesis: closing the loop

description: Cached results of running the experiments described and implemented in my PhD thesis, "Biologically inspired methods in speech recognition and synthesis: closing the loop." Placing these files in the directory cloned from https://github.com/tbekolay/phd allows the plots to be reproduced as submitted in the original thesis submission.
DOI: 10.6084/m9.figshare.2063946.v1
title: GENOMIC AND METABOLOMIC PROFILE ASSOCIATED TO CLUSTERING OF CARDIO-METABOLIC RISK FACTORS

description: the sample included individuals older than 18 years in the absence of serious concomitantdisease or psychiatric disorder, which could interfere with the study. All the subjectsincluded were white, living in an area with a low immigration rate.<br>The study included the assessment of anthropometric measurements, blood pressure, glycaemia, lipid profile and smoking status as well as personal and familial information<br>about cardiovascular risk factors and disease. Cardiometabolic risk factors were iidentified, according to the ATPIII criteria used for MS ], and MS was defined by the presence of three or more of the following components: 1) high waist circumference(men ≥ 102cm; women ≥88 cm); 2) high triglycerides (≥150mg/dL); 3) low HDL<br>cholesterol (men ≥ 40mg/dL; women ≥50mg/dL); 4) high blood pressure (systolic blood<br>pressure ≥130 mmHg and/or diastolic blood pressure ≥ 85 mmHg or being on<br>antihypertensive medications) and 5) high fasting glucose (≥ 110 mg/dL or being on drug treatment for elevated glucose). The subjects were divided into three groups:<br>Group 1 comprised of 617 subjects with less than two risk criteria of the ATPIIguideline; Group 2 comprised of 295 subjects with 2 risk factors and Group 3 comprised of 283 subjects with 3 or more of the criteria, which is considered to be MS.Weight was assessed with precise scales while the individuals were without shoes and<br>wearing light clothing. Height was determined in a similar way. Body mass index (BMI) was calculated using the following formula "weight (kg)/height2 (m)". Glucose<br>and lipid profile was measured in blood samples obtained with a mean of 3 hoursfasting (range 0-17). Basic serum biochemistry and lipid profile.Differences in the 28 metabolite values for each SNP in patients from Group 1 and Group 3 of each genotype were calculated. Finally, the metabolic profile and the most relevant metabolites of 5<br>genotype and allele were compared between patients from Group 1 and Group 3. The data were co-variated with respect to age, sex and smoking status. Bonferroni correctionwas applied in all the analysis<br><br>
DOI: 10.6084/m9.figshare.2064048.v2
title: Proposta di alcuni nuovi strumenti per comprendere la logica dei processi cognitivi e per superare alcuni limiti dell’attuale approccio al deep-learning

description: Le attuali tecniche per gestire l’apprendimento di agenti intelligenti, composti da reti neurali profonde, hanno mostrato una sorprendente efficacia se applicate ad ambienti di complessità limitata (V. Mnih, D. Hassabis & alt. Nature 2015). Ma esse non sembrano direttamente applicabili per costruire un vero sistema cognitivo che sia in grado di operare in una ambiente complesso come il mondo che ci circonda. In questo lavoro propongo un nuovo approccio alla cognizione che, partendo da un’analisi dei suoi fondamenti, ricava importanti indicazioni per comprendere alcuni aspetti particolarmente importanti della logica generale dei processi cognitivi naturali. Queste idee forniscono degli strumenti che consentono di proporre un modello generale della cognizione e di stendere il progetto per la realizzazione di sistemi cognitivi artificiali potenzialmente capaci di forme di intelligenza avanzata. Grazie a questi strumenti appare possibile scomporre il problema complessivo della realizzazione di un sistema cognitivo in un insieme di sotto-problemi. Questi ultimi appaiono sostanzialmente già affrontabili con le tecniche sviluppate recentemente nel campo del deep-learning.
DOI: 10.6084/m9.figshare.2064048.v1
title: Proposta di alcuni nuovi strumenti per comprendere la logica dei processi cognitivi e per superare alcuni limiti dell’attuale approccio al deep-learning

description: Le attuali tecniche per gestire l’apprendimento di agenti intelligenti, composti da reti neurali profonde, hanno mostrato una sorprendente efficacia se applicate ad ambienti di complessità limitata (V. Mnih, D. Hassabis & alt. Nature 2015). Ma esse non sembrano direttamente applicabili per costruire un vero sistema cognitivo che sia in grado di operare in una ambiente complesso come il mondo che ci circonda. In questo lavoro propongo un nuovo approccio alla cognizione che, partendo da un’analisi dei suoi fondamenti, ricava importanti indicazioni per comprendere alcuni aspetti particolarmente importanti della logica generale dei processi cognitivi naturali. Queste idee forniscono degli strumenti che consentono di proporre un modello generale della cognizione e di stendere il progetto per la realizzazione di sistemi cognitivi artificiali potenzialmente capaci di forme di intelligenza avanzata. Grazie a questi strumenti appare possibile scomporre il problema complessivo della realizzazione di un sistema cognitivo in un insieme di sotto-problemi. Questi ultimi appaiono sostanzialmente già affrontabili con le tecniche sviluppate recentemente nel campo del deep-learning.
DOI: 10.6084/m9.figshare.2063901
title: Bandwidth vs. Dominant Frequency Sabana Seca Plot with Area of Interest

description: (A) Bandwidth (bw) vs. Dominant Frequency (y_max) log density plot of matrix of audio events extracted from Sabana Seca. A rectangle marks the Area of Interest. <br>(B) Closeup on the first area of interest at 700 Hz &lt; bw &lt; 1900 Hz, 2650 Hz &lt; y_max &lt; 3550 Hz.
DOI: 10.6084/m9.figshare.2063892
title: idiom_paper_Online_Data.rar

description: data for the paper"Does temporal integration occur for unrecognizable words in visual crowding<sub>?"</sub>"
DOI: 10.6084/m9.figshare.2063892.v1
title: idiom_paper_Online_Data.rar

description: data for the paper"Does temporal integration occur for unrecognizable words in visual crowding<sub>?"</sub>"
DOI: 10.6084/m9.figshare.2063901.v3
title: Bandwidth vs. Dominant Frequency Sabana Seca Plot with Area of Interest

description: (A) Bandwidth (bw) vs. Dominant Frequency (y_max) log density plot of matrix of audio events extracted from Sabana Seca. A rectangle marks the Area of Interest. <br>(B) Closeup on the first area of interest at 700 Hz &lt; bw &lt; 1900 Hz, 2650 Hz &lt; y_max &lt; 3550 Hz.
DOI: 10.6084/m9.figshare.2063901.v2
title: Bandwidth vs. Dominant Frequency Sabana Seca Plot with Area of Interest

description: (A) Bandwidth (bw) vs. Dominant Frequency (y_max) log density plot of matrix of audio events extracted from Sabana Seca. A rectangle marks the Area of Interest. <br>(B) Closeup on the first area of interest at 700 Hz &lt; bw &lt; 1900 Hz, 2650 Hz &lt; y_max &lt; 3550 Hz.
DOI: 10.6084/m9.figshare.2063850
title: Cell sorting Data

description: Cell sorting FACS data.<i> Rattus norvegicus.</i>
DOI: 10.6084/m9.figshare.2063844
title: Western Greenland Temperatures Related to Supraglacial Lake Behavior

description: PROMICE automatic weather stations KAN_B (350 m a.s.l), KAN_L (680 m a.s.l), and KAN_U (1840 m a.s.l) in western Greenland mapped on a Landsat 8 image (July 8, 2015; Path 007, Row 013) (a); unfortunately, intermediate station KAN_M (1270 m a.s.l) was inactive for much of the period of interest. 2014 and 2015 2 m surface daily temperature, smoothed weekly (b).<br> <i>This figure, the smoothed weekly data, and the MATLAB code used to ingest, process, and preliminarily plot the data are also available in this fileset.</i><br> <i>Weather station data come from the Programme for Monitoring of the Greenland Ice Sheet (PROMICE) and the Greenland Analogue Project (GAP), provided by the Geological Survey of Denmark and Greenland (GEUS) at </i><i>http://www.promice.dk</i><i>.</i> Published as Supplementary Information in Pope (2016), "Reproducibly Estimating and Evaluating Supraglacial Lake Depth With Landsat 8 and Other Multispectral Sensors", Earth and Space Science.<br><i></i>
DOI: 10.6084/m9.figshare.2063847
title: Phagocytosis Assay

description: pHrodo<sup>TM</sup><i>E.coli</i>-BioParticles. Phagocytosis activity FACS data. <i>Rattus norvegicus. </i>
DOI: 10.6084/m9.figshare.2063850.v1
title: Cell sorting Data

description: Cell sorting FACS data.<i> Rattus norvegicus.</i>
DOI: 10.6084/m9.figshare.2063841
title: Proinflammatory Cytokines

description: IL-6 and TNF-a ELISA data. <i>Rattus norvegicus</i>
DOI: 10.6084/m9.figshare.2063841.v1
title: Proinflammatory Cytokines

description: IL-6 and TNF-a ELISA data. <i>Rattus norvegicus</i>
DOI: 10.6084/m9.figshare.2063832
title: Influenza A Entry Model and Data

description: A model of influenza entry together with datasets it has been fitted to.
DOI: 10.6084/m9.figshare.2063781
title: Disambiguating the Stream/Bounce Illusion With Inference

description: The ‘stream/bounce’ illusion refers to the perception of an ambiguous visual display in which two discs approach each other on a collision course. The display can be seen as two discs streaming through each other or bouncing off each other. Which perception dominates, may be influenced by a brief transient, usually a sound, presented around the time of simulated contact. Several theories have been proposed to account for the switching in dominance based on sensory processing, attention and cognitive inference, but a universally applicable, parsimonious explanation has not emerged. We hypothesized that only cognitive inference would be influenced by the perceptual history of the display. We rendered the display technically unambiguous by vertically offsetting the targets’ trajectories and manipulated their history by allowing the objects to switch from one trajectory to the other up to four times before the potential collision point. As the number of switches increased, the number of ‘bounce’ responses also increased. These observations show that expectancy is a critical factor in determining whether a bounce or streaming is perceived and may form the basis for a universal explanation of instances of the stream/bounce illusion.
DOI: 10.6084/m9.figshare.2063832.v1
title: Influenza A Entry Model and Data

description: A model of influenza entry together with datasets it has been fitted to.