cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pv4f8z
title: Occurrence Download

description: A dataset containing 1464 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ostorhinchus properuptus"
 ]
}

 The dataset includes 1464 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032729-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8hqwy
title: Occurrence Download

description: A dataset containing 90433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tyrannulus elatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 90433 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032714-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4z8ptb
title: Occurrence Download

description: A dataset containing 1710 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tyrannus cubensis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1710 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032730-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nb8yrd
title: Occurrence Download

description: A dataset containing 60335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tyrannus caudifasciatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 60335 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032719-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75nthw
title: Occurrence Download

description: A dataset containing 837 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apogon properupta"
 ]
}

 The dataset includes 837 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032731-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6hx3r
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tyto almae)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 26 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032733-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6tk8t
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD2107"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032734-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w26pvb
title: Occurrence Download

description: A dataset containing 68213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Geometry POLYGON((2.10139 50.75204,8.86001 50.75204,8.86001 53.45433,2.10139 53.45433,2.10139 50.75204))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pandionidae"
 ]
}

 The dataset includes 68213 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032696-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pt87ad
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tyto aurantia)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 116 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032735-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntbpr6
title: Occurrence Download

description: A dataset containing 2880250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Amaranthus retroflexus, Plantago major, Sisymbrium irio, Capsella bursa-pastoris, Rumex crispus, Polygonum persicaria, Chenopodium murale, Taraxacum officinale, Hyoscyamus niger, Centaurea solstitialis)"
 ]
}

 The dataset includes 2880250 records from 5687 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032724-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwzsu9
title: Occurrence Download

description: A dataset containing 139276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sarcoptiformes",
 "Year is greater than or equal to 1990",
 "Continent is Europe"
 ]
}

 The dataset includes 139276 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016816-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15346915
title: Intraspecies sequence-graph analysis of the Phytophthora theobromicola genome reveals a dynamic structure and variable effector repertoires

description: Phytophthora theobromicola is an emerging cacao pathogen recently identified in Brazil as an aggressive agent of black pod rot. We generated genome assemblies for two P. theobromicola isolates using long-read sequencing and five additional isolates using short reads. Comparative analysis revealed a genome size and predicted gene content comparable to P. citrophthora, a closely related species with a broad host range that includes both citrus and cacao. An intraspecies sequence-graph analysis revealed a highly dynamic genome structure with high proportion of variable effectors. Syntenic orthology analysis across 13 Phytophthora species identified orthologous gene groups conserved only in cacao pathogens and others specific to P. theobromicola. RxLR effectors and CAZymes were particularly enriched among lineage-specific syntenic groups, with RxLRs preferentially located near transposable elements and within gene-sparse, repeat-rich regions.  Transcriptome analysis of infected cacao tissues showed that 88% of predicted effectors were expressed, with pods exhibiting the highest number of upregulated genes. Notably, several RxLRs classified as P. theobromicola-specific syntenic orthologs were highly expressed in infected tissues, suggesting that these lineage-specific effectors may play key roles in host-pathogen interactions unique to cacao. Together, our findings highlight the dynamic architecture and functional plasticity of the P. theobromicola genome, providing foundational insights into its virulence strategies and supporting future studies on host adaptation and effector evolution in emerging cacao pathogens.
DOI: 10.5281/zenodo.15346916
title: Intraspecies sequence-graph analysis of the Phytophthora theobromicola genome reveals a dynamic structure and variable effector repertoires

description: Phytophthora theobromicola is an emerging cacao pathogen recently identified in Brazil as an aggressive agent of black pod rot. We generated genome assemblies for two P. theobromicola isolates using long-read sequencing and five additional isolates using short reads. Comparative analysis revealed a genome size and predicted gene content comparable to P. citrophthora, a closely related species with a broad host range that includes both citrus and cacao. An intraspecies sequence-graph analysis revealed a highly dynamic genome structure with high proportion of variable effectors. Syntenic orthology analysis across 13 Phytophthora species identified orthologous gene groups conserved only in cacao pathogens and others specific to P. theobromicola. RxLR effectors and CAZymes were particularly enriched among lineage-specific syntenic groups, with RxLRs preferentially located near transposable elements and within gene-sparse, repeat-rich regions.  Transcriptome analysis of infected cacao tissues showed that 88% of predicted effectors were expressed, with pods exhibiting the highest number of upregulated genes. Notably, several RxLRs classified as P. theobromicola-specific syntenic orthologs were highly expressed in infected tissues, suggesting that these lineage-specific effectors may play key roles in host-pathogen interactions unique to cacao. Together, our findings highlight the dynamic architecture and functional plasticity of the P. theobromicola genome, providing foundational insights into its virulence strategies and supporting future studies on host adaptation and effector evolution in emerging cacao pathogens.
DOI: 10.15468/dl.t2mcts
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Athyrium arcuatum Liebm."
 ]
}

 The dataset includes 194 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016833-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fc2vne
title: Occurrence Download

description: A dataset containing 9902 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Ximeniaceae"
 ]
}

 The dataset includes 9902 records from 340 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016829-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fz9pwe
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is True",
 "HasGeospatialIssue is False",
 "OccurrenceStatus is Present",
 "TaxonKey is Alexandromys middendorffii (Poljakov, 1881)"
 ]
}

 The dataset includes 35 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016831-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.puqkba
title: Occurrence Download

description: A dataset containing 23198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Zamiaceae"
 ]
}

 The dataset includes 23198 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016832-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6csre
title: Occurrence Download

description: A dataset containing 884 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Athyrium microphyllum (Sm.) Alston"
 ]
}

 The dataset includes 884 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016835-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eztbm9
title: Occurrence Download

description: A dataset containing 343 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Craterocapsa Hilliard & B.L.Burtt"
 ]
}

 The dataset includes 343 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016841-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vczvz8
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Gynoxys caracensis Muschl."
 ]
}

 The dataset includes 121 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016842-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ne5ktc
title: Occurrence Download

description: A dataset containing 23215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Zosteraceae"
 ]
}

 The dataset includes 23215 records from 417 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016840-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7wmpk
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Zygopteridaceae"
 ]
}

 The dataset includes 28 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016844-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ennyc5
title: Occurrence Download

description: A dataset containing 1062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Athyrium sinense Rupr."
 ]
}

 The dataset includes 1062 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016847-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xc7p9k
title: Occurrence Download

description: A dataset containing 1829 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Athyrium melanolepis (Franch. & Sav.) Christ"
 ]
}

 The dataset includes 1829 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016846-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zstje4
title: Occurrence Download

description: A dataset containing 10012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Crateva L."
 ]
}

 The dataset includes 10012 records from 387 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016845-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkjcym
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Cygnus atratus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 309 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081640-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrur63
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Plethodontohyla notosticta)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081639-250717081556266/datasets/export for details.
DOI: 10.5281/zenodo.15693580
title: Data from "Six million years of vole dental evolution shaped by tooth development"

description: This dataset underlies the results of "Six million years of vole dental evolution shaped by tooth development" (Lafuma et al., 2025). It consists in measurements of first lower molars (m1) of adult specimens of extant and extinct species of Arvicolinae (Cricetidae: Rodentia), phylogenetic trees describing relations between the species included in the dataset (or subsets of these species), CT scan data for embryonic m1 teeth of bank voles (Clethrionomys glareolus) and domestic mice (Mus musculus), and data from in vitro culture experiments on bank vole (Clethrionomys glareolus) embryonic m1 teeth. Additional information regarding data creation, curation, processing, and subsequent analyses can be found in the original publication.
DOI: 10.5281/zenodo.15693581
title: Data from "Six million years of vole dental evolution shaped by tooth development"

description: This dataset underlies the results of "Six million years of vole dental evolution shaped by tooth development" (Lafuma et al., 2025). It consists in measurements of first lower molars (m1) of adult specimens of extant and extinct species of Arvicolinae (Cricetidae: Rodentia), phylogenetic trees describing relations between the species included in the dataset (or subsets of these species), CT scan data for embryonic m1 teeth of bank voles (Clethrionomys glareolus) and domestic mice (Mus musculus), and data from in vitro culture experiments on bank vole (Clethrionomys glareolus) embryonic m1 teeth. Additional information regarding data creation, curation, processing, and subsequent analyses can be found in the original publication.
DOI: 10.15468/dl.9pf8jx
title: Occurrence Download

description: A dataset containing 781774071 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 781774071 records from 16766 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098632-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.232ddg
title: Occurrence Download

description: A dataset containing 1379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phyllostachys nigra (Lodd. ex Lindl.) Munro",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1379 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041370-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j0ih75
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000085-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mma9yn
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode is one of (uel, nrm, uem)",
 "TaxonKey is Crenicichla jurubi Lucena & Kullander, 1992"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028207-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvjh55
title: Occurrence Download

description: A dataset containing 27814 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cotula coronopifolia L."
 ]
}

 The dataset includes 27814 records from 389 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041390-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k30qdb
title: Occurrence Download

description: A dataset containing 1518960052 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1518960052 records from 17518 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005247-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29108882
title: COREQ_Checklist

description: This document is the reporting guidelines for qualitative research (COREQ Checklist)
DOI: 10.6084/m9.figshare.29108882.v1
title: COREQ_Checklist

description: This document is the reporting guidelines for qualitative research (COREQ Checklist)