cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3243509
title: Copernicus Global Land Service: Land Cover 100m: collection 2: epoch 2015: Globe

description: First global land cover maps from the global component of the Copernicus Land Service, derived from PROBA-V satellite observations.<br> Collection 2 refers to the first global maps, in 100m spatial resolution grid (collection 1 was a demonstration over Africa). <br> First epoch is year 2015. More years and maps of changes between years are expected to be added.<br> The maps include the main discrete classification (23 classes aligned with UN-FAO's LCCS), a set of cover fractions (%) for the 10 main classes and additional quality layers. Click here to view the maps More information about the land cover maps Product User Manual
description: {"references": ["Pekel, J.F., Cottam, A., Gorelick, N., Belward, A.S. (2016). High-resolution mapping of global surface water and its long-term changes. Nature 540, 418-422. doi:10.1038/nature20584", "Marconcini, M., \u00dcreyen, S., Esch, T., Metz, A., Zeidler, J. and Palacios-Lopez, D. (2017b). \"Outlining the urban side of the Earth \u2013 the GUF+2015\","]}
DOI: 10.5281/zenodo.4749505
title: Index Villaris, 1680

description: <strong>INDEX VILLARIS: or, An Alphabetical Table of all the cities, market-towns, parishes, villages, and private seats in England and Wales</strong> was first published by John Adams in 1680. This dataset consists of a transcription of all 24,000 place-names listed in <em>Index Villaris</em>, together with the the symbols representing Adams's categorisation of each place and modern versions of the place-names and the counties and administrative hundred in which they lie or lay. It also comprises a transcription of the latitude and longitude recorded by Adams, and another set of coordinates generated by the application of a thin plate spline transformation calculated by matching some 2,000 place-names to the accurately-georeferenced CAMPOP Towns dataset. The dataset is being checked, corrected, and refined to include linkage to other geospatial references such as OpenStreetMap and Wikidata, and will in due course be made available in the Linked Places Format.
description: {"references": ["Heawood, Edward. \"John Adams and His Map of England.\" The Geographical Journal 79, no. 1 (1932): 37-44. Accessed April 30, 2021. doi:10.2307/1784518.", "Taylor, E. G. R. \"Notes on John Adams and Contemporary Map Makers.\" The Geographical Journal 97, no. 3 (1941): 182-84. Accessed April 30, 2021. doi:10.2307/1787329.", "Ravenhill, William. \"John Adams, His Map of England, Its Projection, and His Index Villaris of 1680.\" The Geographical Journal 144, no. 3 (1978): 424-37. Accessed April 30, 2021. doi:10.2307/634819.", "Mostern, Ruth, and Humphrey Southall. \"Gazetteers Past: Placing Names from Antiquity to the Internet.\" In Placing Names: Enriching and Integrating Gazetteers, edited by Mostern Ruth, Southall Humphrey, and Berman Merrick Lex, 15-25. Bloomington; Indianapolis: Indiana University Press, 2016. Accessed April 30, 2021. doi:10.2307/j.ctt2005zq7.6."]}
DOI: 10.5281/zenodo.6513789
title: Agilent v7 exomes of NA12878

description: FastQ files used in the NGS-CN benchmarking initiative
DOI: 10.5281/zenodo.7075041
title: Twist Whole-Exome Sequencing Dataset - High Coverage - WGGC SIG4 Benchmarking

description: GIAB Reference Genome for Benchmarking Initiatives in the West German Genome Center (WGGC) - SIG4. Twist Whole-Exome Sequencing Dataset - High Coverage - 200M Reads.
description: {"references": ["Krusche, P., Trigg, L., Boutros, P.C. et al. Best practices for benchmarking germline small-variant calls in human genomes. Nat Biotechnol 37, 555\u2013560 (2019)", "Zook, J., Catoe, D., McDaniel, J. et al. Extensive sequencing of seven human genomes to characterize benchmark reference materials. Sci Data 3, 160025 (2016)", "Wagner, J., Olson, N.D., Harris, L. et al. Curated variation benchmarks for challenging medically relevant autosomal genes. Nat Biotechnol 40, 672\u2013680 (2022)"]}
DOI: 10.5281/zenodo.7133342
title: A rapidly evolving high-amplitude δ Scuti star crossing the Hertzsprung Gap

description: The datasets includes the work folder which we used in the paper to construct the evolutionary models based on MESA (r15140).
DOI: 10.5281/zenodo.7764306
title: The gut microbiota does not promote host sociality in the European earwig

description: Among the many effects of gut microbes on their hosts, a recent hypothesis suggests that they may have played a key role in host social evolution. By increasing the level of host aggregation, gut microbes could increase their own transmission to new hosts. While this hypothesis has been addressed in some theoretical work, it remains untested empirically. Here, we addressed this knowledge gap using the European earwig, an insect that naturally exhibits both solitary and social life. We first tested whether variation in earwig aggregation levels reflected variation in their gut microbiota, and then performed a gut content transplant experiment to test whether acquiring a gut microbiota from social individuals augments host aggregation. Contrary to our predictions, naturally high or low aggregation levels were not associated with gut microbial communities, and low-aggregation individuals did not become more gregarious by ingesting gut content from high-aggregation conspecifics. Overall, these results reveal that the aggregation level of earwigs is neither driven by a specific group of manipulative microorganisms nor by their gut microbial diversity. More generally, these experimental data indicate that the gut microbiota may only have limited influence on its host’s behavioural transition from solitary to group living.
DOI: 10.6084/m9.figshare.13008392.v1
title: GoodEnough_Supplement_2.xlsm

description: Supplement 2 for "How good is 'Good Enough'? Major element chemical analyses of planetary basalts by spaceccraft instruments. by Allan H. Treiman, Justin Filiberto, and Edgard Rivera-Valeintín. <i>Planetary Science Journal,</i> 2020. <br><br> This .xlsm spreadsheet includes three examples of the 'monte-carlo' or direct propagation on uncertainties on spacecraft chemical analyses in the above paper. Input data are a chemical analysis (oxide format) of a rock and the one-sigma uncertainties (accuracy and precision if available) for each element in a particular analytical method. <br><br><br>
DOI: 10.6084/m9.figshare.21805200.v1
title: GEP and Localization Model System Parameters

description: The Generation Expansion Model, and Localization model system parameters are included in the file, this helps the reader to optimally locate the candidate power plants in the bus system.
DOI: 10.6084/m9.figshare.25244161.v2
title: Differential global gene expression in visceral adipose tissue.

description: Differential global gene expression in visceral adipose tissue in 24 samples (12 individuals x2 conditions, insulin, and insulin plus melatonin).
DOI: 10.6084/m9.figshare.25751109.v1
title: Presstitute_digital analysis

description: A digital examination of the hashtag #presstitute using a Python script to extract the top 1000 hashtags, bigrams, and trigrams.
DOI: 10.6084/m9.figshare.25833901.v1
title: Biblio Information SLR Digital Servitization.csv

description: Provide a summary or key information contained within a systematic literature review on digital servitization. It would encompass details about the research subject, the methodology employed in the literature review, major findings, and possibly conclusions or recommendations resulting from the analysis of the literature. With this description, readers would gain a general overview of the context, focus, and contribution of the literature review in understanding digital servitization. Provide a summary or key information contained within a systematic literature review on digital servitization. It would encompass details about the research subject, the methodology employed in the literature review, major findings, and possibly conclusions or recommendations resulting from the analysis of the literature. With this description, readers would gain a general overview of the context, focus, and contribution of the literature review in understanding digital servitization.
DOI: 10.6084/m9.figshare.25837021
title: Supplementary Material for: Validation of a Risk Prediction Equation for Incident Chronic Kidney Disease in a Hypertensive Non-Diabetes Cohort in Singapore Primary Care Patients

description: <b><i>Background:</i></b> Accurate identification of individuals at risk of developing chronic kidney disease (CKD) may improve clinical care. Nelson et al. developed prediction equations to estimate the risk of incident eGFR of less than 60 mL/min/1.73 m<sup>2</sup> in diabetic and non-diabetes patients using data from 34 multinational cohorts. We aim to validate the non-diabetes equation in our local multi-ethnic cohort and develop further prediction models. <b><i>Methods:</i></b> Demographics, clinical and laboratory data of hypertensive non-diabetes patients with baseline eGFR ≥60 mL/min/1.73 m<sup>2</sup> on follow-up with primary care clinics between 2010 and 2015 were collected. Follow-up was 5 years from entry to study. We validated Nelson’s equation and developed our own model which we subsequently validated. The developmental cohort included patients between 2010 and 2014 while the validation cohort included patients in 2015. Variables included age, sex, eGFR, history of cardiovascular disease, ever smoker, body mass index, albuminuria, cholesterol, and treatment. Primary outcome was incident eGFR &lt;60/min/1.73 m<sup>2</sup> within 5 years. Model performance was evaluated by C-statistics and calibration was assessed. <b><i>Results:</i></b> In the developmental cohort of 27,800 patients, 2823 (10.2%) developed the outcome during a mean follow-up of 4.4 years while 638 (12.8%) patients developed the outcome in the validation cohort of 4,994 patients. Applicability of Nelson’s equation was limited by missing albuminuria, absence of black race, and exclusion of non-hypertensive patients in our cohort. Nonetheless, the modified Nelson’s model demonstrated C-statistic of 0.85 (95% CI: 0.84–0.86). The C-statistic of our bespoke model was 0.85 (0.85–0.86) and 0.87 (0.85–0.88) for the developmental cohort and validation cohort, respectively. Calibration was suboptimal as the predicted risk exceeded the observed risk. <b><i>Conclusions:</i></b> The modified Nelson’s equation and our locally derived novel model demonstrated high discrimination. Both models may potentially be used in predicting risk of CKD in hypertensive patients who are managed in primary care, allowing for early interventions in high-risk population.
DOI: 10.6084/m9.figshare.25997215
title: Supplementary Material for: Integrative analysis by mendelian randomization and large-scale single-cell transcriptomics reveals causal links between B cell subtypes and diabetic kidney disease

description: Introduction: The growing incidence of diabetic kidney disease (DKD) and the difficulties in its management underscore the need for a more comprehensive understanding of its pathogenesis. Recent studies have emphasized the significant impact of circulating immunity on the development of diabetic microvascular complications including retinopathy and neuropathy, research on circulating immunity in DKD remains limited. Methods: This study utilized mendelian randomization (MR) analysis to explore the potential independent causal relationships between circulating immune cells and DKD pathogenesis. Additionally, a combination of single-cell disease relevance score (scDRS) and immune cell infiltration analysis was employed to map the circulating immunity landscape in DKD patients. Results: Ten immune traits, including 5 of B cells, 2 of T cells, 2 of granulocytes and one of monocytes, were defined to be associated with the pathogenesis of DKD. Notably, IgD-CD27- B cell Absolute Count [IVW: OR, 1.102 (1.023 to 1.189), p=0.011] and IgD-CD24- B cell Absolute Count [IVW: OR, 1.106 (1.030 to 1.188), p=0.005] were associated with promoting DKD pathogenesis, while CD24+CD27+ B cell %B cell [IVW: OR, 0.943 (0.898 to 0.989), p=0.016] demonstrated a protective effect against DKD onset. The presence of B cell activating factor receptor (BAFF-R) on CD20-CD38- B cell [IVW: OR, 0.946 (0.904 to 0.989), p=0.015] and BAFF-R on IgD-CD38+ B cell [IVW: OR, 0.902 (0.834 to 0.975), p=0.009] also indicated a potential role in preventing DKD. Single-cell disease relevance score (scDRS) analysis revealed that two main subsets of B cells, naïve B and memory B cells, had a higher proportion of DKD-related cells or a higher scDRS score of DKD phenotype, indicating their strong association with DKD. Furthermore, immune infiltrate deconvolution analysis showed a notable decrease in the circulating memory B cells and class-switched memory B cells in DKD patients compared to those of DM patients without DKD. Conclusion: Our study revealed the causal relations between circulating immunity and DKD susceptibility, particularly highlighted the potential roles of B cell subtypes in DKD development. Further studies addressing the related mechanisms would broaden the current understanding of DKD pathogenesis.
DOI: 10.6084/m9.figshare.26178301
title: Supplementary Material for: Association Between City-Level Particulate Matters Exposure and Frailty among Middle-aged and Older Adults in China

description: Introduction: The effects of exposure to particulate matter and frailty, as well as its exposure-response relationship, have not been effectively explored. This study aimed to explore the association between long-term exposure to particulate matter and frailty state as well as each dimension in Chinese middle-aged and older adults, in addition to the exposure-response relationship.
Methods: The data was obtained from the National Urban Air Quality Real-Time Dissemination Platform and China Health and Retirement Longitudinal Study (CHARLS). Frailty was measured by a frailty index containing 39 indicators. Annual averages of seven pollutants were calculated from hourly monitoring data. We used multilevel regression modeling to explore the association between long-term exposure to particulate matter and frailty. Meanwhile, we explored the exposure-response relationship based on a multilevel generalized summation model. We performed a sensitivity analysis using a multi-pollution model and a quantile-based g-computation (QGC) model.
Results: 15,611 participants were included in the analysis. We find that long-term exposure to PM2.5 was associated with an increased risk of pre-frail and frailty (all p&lt;0.05). PMc and PM10 exhibited similar associations. The exposure-response relationship between PM2.5 showed a linear relationship, whereas the exposure-response relationship between PM10, PMc showed a non-linear relationship. Elevated PM2.5 concentrations showed significant positive associations with the number of chronic diseases score, IADL score, and functional limitation status score (all p&lt;0.05). PM10 and PMc showed similar positive correlations. These results remained robust after sensitivity analyses using a multi-pollution model and QGC model.
Conclusion: Chronic exposure to particulate matter was significantly associated with increased risk of frailty. The exposure-response relationship between PM2.5 concentration and frailty showed a linear relationship, and the exposure-response relationship between PM10 and PMc showed a non-linear relationship. Exposure to a mixture of pollutants carried a higher risk of frailty than exposure to a single pollutant.
DOI: 10.6084/m9.figshare.26840590
title: Supplementary Material for: Diagnostic Accuracy of Papanicolaou Society of Cytopathology System for Reporting Respiratory Cytology: A Systematic Review and Meta-Analysis

description: Introduction
This study conducts the first meta-analysis to evaluate the diagnostic accuracy and the aggregated risk of malignancy associated with each category of the Papanicolaou Society of Cytopathology (PSC) system for reporting respiratory cytology.
Methods
A systematic search was conducted in PubMed, Scopus, and Web of Science using the keywords “(Lung, Respiratory specimens) AND (Papanicolaou Society of Cytopathology System).” Articles were assessed for risk of bias using the QUADAS-2 tool. After excluding inadequate samples, sensitivity and specificity for various cut-off points. Summary receiver operating characteristic (sROC) curves and diagnostic odds ratios (DOR) were pooled to assess diagnostic accuracy.
Results
Five studies, totaling 3489 cases, were included. Sensitivity and specificity for the "Atypical and higher risk categories" considered positive were 60% (95% CI, 51%-68%) and 87% (95% CI, 81%-92%), respectively. For the "Suspicious for malignancy and higher risk categories" considered positive, sensitivity and specificity were 49% (95% CI, 40%-58%) and 95% (95% CI, 92%-97%), respectively. Sensitivity and specificity for the "Malignant" category considered positive for malignancy were 42% (95% CI, 33%-52%) and 97% (95% CI, 92%-99%), respectively. The pooled Area Under the Curve (AUC) ranged from 68% to 75% for each cut-off.
Conclusion
This meta-analysis underscores the PSC system's accuracy in reporting respiratory cytology. It highlights the diagnostic importance of the "Suspicious" and "Malignant" categories in identifying malignancy, and the utility of the "Atypical" category for initial screening. These findings support the PSC system's role in enhancing diagnostic accuracy and clinical decision-making in respiratory cytology.
DOI: 10.1285/i20356609v16i1p119
title: Politicising the Amnesty: Struggles for Migrants' Legality during a Pandemic

description: The 2020 regularisation for irregular migrant workers in Italy relied extensively on civil society actors' (CSAs) involvement to provide information, legal support and handle the bureaucratic procedures of the programme. Based on qualitative research carried out with CSAs, migrants and employers involved in the programme, the article describes the heterogeneity of the CSAs involved as well as the different politicisation routes they followed. We show that, through a series of activities – information provision, preparing and sending applications, institutional lobbying and case advocacy, civil disobedience and protest – CSAs have attempted to repoliticise the amnesty through four different avenues: solidarity, debordering, empowering and contention.
DOI: 10.14284/665
title: RGB datasets for machine learning-based microplastic analysis - update

description: This dataset features RGB statistics extracted from Nile red-stained particles, serving to train a 'Plastic Detection Model' and a 'Polymer Identification Model' using supervised machine learning techniques. By accurately discerning between plastic and natural particles, and distinguishing between different plastic polymers, the models facilitate efficient microplastic detection and identification.
description: Datasets containing RGB statistics extracted from photographed fluorescent reference particles stained with Nile red. The most abundantly produced plastic polymers worldwide as well as natural materials with high prevalence in the marine environment were considered for these datasets. The spectral data was used to construct two supervised machine learning models, i.e. a ‘Plastic Detection Model’ (PDM) and a ‘Polymer Identification Model’ (PIM), based on random forest algorithms. The PDM allows to accurately distinguish plastic from natural particles, while the PIM allows to distinguish different plastic polymers, in a cost- and time-efficient way. The datasets contain Red, Green and Blue (RGB) statistics extracted from Nile red-stained reference particles (50-1200 μm) photographed under three different microscope filters (blue, green and UV). Four different datasets can be found, two for each model (PDM vs. PIM), based on photographs acquired with two different types of microscope (Leica DM 1000 fluorescence microscope vs. Leica M205 FA fluorescence stereomicroscope). The datasets represent an updated version of earlier published RGB datasets, now containing 135 – 200 particles per polymer category (PIM), and 420-500 per particle type (plastic/organic).
DOI: 10.1594/pangaea.917796
title: Experimental data compilation, thermal tolerance and thermal responsiveness of fish species and life stages

description: The data files contain experimental measurements of thermal tolerance, as well as temperature-dependent development and oxygen consumption rates (i.e. thermal responsiveness) of different life stages of fish. The data were extracted from studies published between 1930 and March 2020, including marine and freshwater species from all continents and climate zones (-70° to 80° latitude). The data were analyzed to assess differences in thermal tolerance and thermal responsiveness between life stages and species living at different latitudes. A phylogenetic imputation procedure was used to predict thermal tolerance limits of life stages for which no experimental data was available. Experimental and imputed thermal tolerance data were used to estimate thermal safety margins (indicating the risk of habitat loss) of different life stages of more than 600 species under different climate change scenarios by 2100.
DOI: 10.17026/dans-xxt-9d28
title: Onderzoek Verplaatsingen in Nederland 2017 - OViN 2017

description: Het Onderzoek Verplaatsingen in Nederland is een continu dagelijks onderzoek naar het verplaatsingsgedrag van de Nederlanders. Aan de respondenten wordt gevraagd om voor één bepaalde dag van het jaar bij te houden waar ze die dag naartoe gaan, met welk doel, met welk vervoermiddel en hoe lang het duurt om er te komen. Daarnaast wordt gevraagd naar enkele algemene persoons- en huishoudkenmerken en naar zaken zoals rijbewijs- en vervoermiddelenbezit. Op grond van dit onderzoek kan informatie worden verkregen over alle dagelijkse verplaatsingen door Nederlanders op Nederlands grondgebied.OViN is een voortzetting van het Mobiliteitsonderzoek Nederland (MON) dat van 2004 t/m 2009 is uitgevoerd door Rijkswaterstaat. Voor 2004 werd het onderzoek onder naam van Onderzoek Verplaatsingsgedrag (OVG) door CBS uitgevoerd.In 2013 is een vraagstelling over bezit en gebruik van elektrische fiets aan OViN toegevoegd. De vragen over de elektrische fiets voor het waarnemen van vervoermiddelenbezit in het huishouden bleek daarbij tot onduidelijkheid te leiden. Daardoor is de informatie over bezit van fietsen in huishoudens in OViN 2013 en 2014 niet goed waargenomen. De informatie over de fietsmobiliteit / fietsgebruik, zowel voor gewone fiets als elektrische fiets, in OViN 2013 en 2014 zijn wel betrouwbaar waargenomen. Met ingang van 2015 is de vraagstelling van fietsbezit in het huishouden verbeterd, waardoor fietsbezit weer correct wordt waargenomen.Voor een juist gebruik van OViN is het van groot belang om de onderzoeksbeschrijving te lezen. Weging en correct gebruik van de weegfactoren wordt daarin uitgelegd. Tevens wordt daarin aangegeven of er bij bepaalde OViN jaren nog specifieke aandachtspunten zijn.
DOI: 10.17188/1192214
title: Materials Data on BaPd2 by Materials Project

description: BaPd2 is Cubic Laves structured and crystallizes in the cubic Fd-3m space group. The structure is three-dimensional. Ba is bonded in a 12-coordinate geometry to twelve equivalent Pd atoms. All Ba–Pd bond lengths are 3.37 Å. Pd is bonded to six equivalent Ba and six equivalent Pd atoms to form a mixture of edge, face, and corner-sharing PdBa6Pd6 cuboctahedra. All Pd–Pd bond lengths are 2.88 Å.