cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3531716.v1
title: Data Paper. Data Paper

description: File List FFDND.txt -- File is 753 records not including header row. Each row has 58 cells. Total size is 168 kb, ASCII text, tab-delimited. No compression scheme was used. Description Phenological observations of plant flowering patterns provide useful information for studying the ecological impact of global climate change over long-term periods. However, the long-term data sets with which meaningful comparisons can be made are rare, especially in the less-populated Northern Great Plains region of North America. Here we present the observations of first-flowering time of native and nonnative plant species in North Dakota and Minnesota over the course of 51 years in the last century. Orin A. Stevens recorded the first-flowering time of 753 species in the vicinity of Fargo, North Dakota, USA, and throughout North Dakota from 1910 to 1961. These data offer baseline indications of both the timing of first flowering and the presence/absence for a wide variety of plants in a region of North America with a relatively short growing season. <i>Key words: climate change; flowering time; Great Plains; phenology; tallgrass prairie.</i>
DOI: 10.6084/m9.figshare.c.3613058_d7.v1
title: Additional file 6: of SWIFT-Review: a text-mining workbench for systematic review

description: UNEP EDCs. (XLSX 1432 kb)
DOI: 10.17632/h4m3nvzv6d
title: Settlement Dataset of Undersea Immersed Tunnel

description: The dataset of differential settlement and long-term accumulated settlement was collected from the Hong Kong-Zhuhai-Macao Bridge immersed tunnel for four years.
DOI: 10.6084/m9.figshare.14079920.v2
title: Data and analysis for "Forward genetics in Wolbachia: Regulation of Wolbachia proliferation by the amplification and deletion of an addictive genomic island"

description: This repository contains the data and analysis for the manuscript:<br>Forward genetics in <em>Wolbachia</em>: Regulation of <em>Wolbachia</em> proliferation by the amplification and deletion of an addictive genomic island<br>Elves H Duarte, Ana Carvalho, Sergio López-Madrigal, João Costa, Luís Teixeira
DOI: 10.6084/m9.figshare.22774832.v1
title: Student Perception Data.sav

description: <br> The data is collected from HSC students to identify their perceptions towards online learning during COVID-19
DOI: 10.6084/m9.figshare.25901920.v4
title: Supporting data and code for Mendes et al. 2024 Evidence of a European seed dispersal crisis

description: Supporting data and code for Mendes et al. 2024 Evidence of a European seed dispersal crisis<b>Abstract</b>Seed dispersal is crucial for ecosystem persistence, especially in fragmented landscapes, such as those common in Europe. Ongoing defaunation might compromise effective seed dispersal, but the conservation status of pairwise interactions remains unknown. With a literature review, we reconstructed the first European-wide seed dispersal network and evaluated interactions’ conservation status by assessing each interacting partner’s IUCN conservation status and population trends. We found that a third of the disperser species and interactions face potential extinction and that 30% of the plant species have most of their dispersers threatened or declining. While our study clearly reveals a developing seed dispersal crisis across all European biomes, it also highlights large knowledge gaps regarding the dispersers of most European zoochorous plants, as well as their conservation status, urging further scrutiny and action to conserve the seed dispersal service.
DOI: 10.6084/m9.figshare.26808307.v1
title: Database of nitrogen fertilizer reduction experiments conducted in Japan

description: This database is compiled using a literature survey using Google Scholar and AgriKnowledge to gather data on synthetic nitrogen fertilizer (SNF) reduction experiments in Japan. The search included terms like “synthetic nitrogen fertilizers,” “Japan,” and “crop yield,” and was refined with Boolean operators. The gathered information covered various crops, cultivation periods, SNF input, and organic material N efficiency.Four approaches to nitrogen reduction were identified. The "Reduction" approach involves simple SNF reduction without changing fertilizer type, including zero N treatments. The "Functional fertilizer" approach replaces ordinary fertilizers with slow-release or nitrification-inhibitor fertilizers. The "Organic materials" approach substitutes SNF with organic inputs like manure and crop residues. The "Green manure" approach uses legume and grass species plowed into the soil. Nitrogen input was calculated using N efficacy rates from literature or a web app that estimates N mineralization based on weather and organic material type. Many of the sources are based on the reports written in Japanese, and the titles of the documents are listed in Japanese. The bib file contains information on the online links for each source.
DOI: 10.6084/m9.figshare.17069570.v1
title: Raw PXRD data in .xy format

description: Raw PXRD data in .xy format for La2MgO4, labelled with temperature (in C, except at room temperature ("RT")) and separated into two distinct folders, High_T and Low_T, corresponding to the high- and low-temperature data sweeps and the equally named instrument standards.
DOI: 10.6084/m9.figshare.28194731.v1
title: Amorphophallus albus genome annotation file

description: Amorphophallus albus genome annotation file.
DOI: 10.6084/m9.figshare.28542683.v1
title: Final dataset THO

description: Data relating to the following project:<b>COMPUTED TOMOGRAPHY OF THE EQUINE TEMPOROHYOID JOINT: ASSOCIATION BETWEEN RADIOGRAPHIC CHANGE AND POTENTIAL RISK FACTORS</b>
DOI: 10.6084/m9.figshare.7892351.v1
title: gVCF_HG01510

description: 1000 Genomes gVCF mapped to hs37d5 for HG01510. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/7rgn4p4cvp
title: PTBP1 enforces ATR-CHK1 signalling determining the potency of CDC7 inhibitors

description: Background:
CDC7 kinase is crucial for the initiation of DNA replication and is important for replication stress responses. Several ATP-competitive CDC7 inhibitors (CDC7is) are being developed as possible cancer therapeutics. CDC7 inhibition causes a dose-dependent delay in S-phase progression and mild activation of the S-phase checkpoint pathway, which further limits origin firing through ATR activation.

Methodology:
To identify genes that modulate the cellular responses to CDC7is, we established a CRISPR/Cas9 genome-wide loss-of-function screen. The following data represent the closer investigation of one of these genes, PTBP1, using RNA sequencing, flow cytometry, immunofluorescence analysis and additional techniques as described in the manuscript 'PTBP1 enforces ATR-CHK1 signalling determining the potency of CDC7 inhibitors'.

Data:
Data represent source data for main figures and supplemental items in support of the manuscript 'PTBP1 enforces ATR-CHK1 signalling determining the potency of CDC7 inhibitors', Göder et al. Data collection, interpretation and findings are addressed in the manuscript.
DOI: 10.6084/m9.figshare.1189258.v1
title: C2 carbonate

description: Micro-CT image of C2 carbonate rock and extracted networks (Dong and Blunt, 2009, DOI: http://dx.doi.org/10.1103/PhysRevE.80.036307) The image can be visualised by opening the Nrrd header file C2.nhdr in visualization software such as Paraview or ImageJ (http://fiji.sc/Fiji), You can also open the C2.nhdr file in a text editor to see the image and voxel sizes. See the link provided for further information.
DOI: 10.6084/m9.figshare.28658420.v1
title: vet-lirn-amr-database-2017-2022.xlsx.zip

description: <b>Abstract</b><b>Background</b><br>Antimicrobial Resistance (AMR) is a major global health challenge, particularly in Africa, where antibiotic misuse worsens resistance. This study aims to identify potential drug targets in imipenem-resistant <i>E. coli</i> isolates from the Vet-LIRN database through a four-phase approach integrating interactive GIS analysis, genomic data analysis, subtractive genomics, and druggability assessments.<b>Methods</b><br>Phase I involved a literature review and the creation of interactive Geographical Information System (GIS) dashboards to examine resistance patterns for Ampicillin, Minocycline, and Imipenem across North America and Africa, using data from the ATLAS and Vet-LIRN databases. Phase II focused on genomic analysis of resistant and susceptible <i>E. coli</i> isolates to identify non-synonymous mutations linked to imipenem resistance. Phase III applied subtractive genomics to identify essential bacterial proteins unique to <i>E. coli</i> and absent in humans and dogs. Phase IV assessed the druggability of these proteins by matching with proteins in DrugBank, and interactions of the matched proteins with drugs in the DrugBank database.<b>Results</b><br>GIS analysis revealed significant geographical variations in resistance, with Africa showing higher resistance to Ampicillin (80%) compared to North America (55%). Genomic analysis identified 337 proteins in the imipenem-resistant <i>E. coli</i> isolates, with 68 considered potential drug targets. Of these, 29 proteins were homologous to DrugBank proteins that interacted with over 1,000 drugs. The cell wall/membrane protein group matched with over 80 drugs, metabolic enzymes group with 166 drugs, transport-related proteins group with more than 700 drugs, regulatory proteins with 1 drug, and DNA methylation/epigenetic proteins group with several drugs.<b>Conclusions</b><br>This study demonstrates that integrating GIS, genomics, substractive genomics, and druggability assessments enhances AMR research and provides a framework for identifying novel drug targets. The matched proteins in DrugBank interacting with over 1,000 drugs offer potential for drug repurposing, particularly against imipenem-resistant <i>E. coli</i> and other multidrug-resistant pathogens.
DOI: 10.6084/m9.figshare.9906092.v1
title: Positive associations among rare species and their persistence in ecological assemblages

description: <b>Data and code associated with the paper entitled "Positive associations among rare species and their persistence in ecological assemblages". </b><br>
DOI: 10.17632/dtm5y85ks7
title: Centrifugal Compressor Mesh Sensitivity Analysis Data

description: This repository is primarily focused on presenting research data from the mesh sensitivity analysis conducted on the first stage of a centrifugal compressor impeller. The primary aim is to understand the impact of various mesh configurations on the compressor's overall performance. The dataset highlights the outcomes of the mesh sensitivity analysis, encompassing results for 9 variants of mesh density.

Data Overview:

Mesh Parameters Description: Detailed information about mesh parameters (17 values) is provided in an Excel file (xlsx format), offering a clear and organized presentation of critical data.
Numerical Calculation Results: The repository includes selected results from numerical simulations for nine distinct blade configurations, offering insights into the performance implications of each configuration.

Data Specifics: The data vividly demonstrates the results of mesh sensitivity analysis across 9 different mesh density variants. This provides a comprehensive understanding of how variations in mesh density can influence the performance and efficiency of the first stage of a centrifugal compressor.

Discipline Focus: The repository is an invaluable asset in the field of Mechanical Engineering, particularly beneficial for those specializing in fluid-flow machinery design.
DOI: 10.6084/m9.figshare.19236714.v2
title: Supplementary files: Seroconversion rates among different designs of COVID-19 vaccines: a network meta-analysis of randomized controlled trials

description: Supplementary files: Seroconversion rates among different designs of COVID-19 vaccines: a network meta-analysis of randomized controlled trials
DOI: 10.6084/m9.figshare.28028231.v1
title: Manuscript Data

description: These data files provide supporting data for the manuscript, which explores the impact of the innovative application of AR technology on consumers' purchase intentions for cultural creative products.
DOI: 10.17632/g564f5f4w5
title: Replication Material for "The effects of Digitalization on Production"

description: The replication material folder contains the data, code and instructions to generate Tables 1, 2 ,3, 7 and Figures 1, 2 and 3 in the paper.
DOI: 10.17632/jhmg2n63g2
title: Self-reported Assessment of the Socio-economic Impact of Anticancer Chemotherapy-related Neurotoxicity

description: Original (Italian) and English translation of the questionnaires used to perform the study.
Original dataset used to perform the analysis (in Italian)
DOI: 10.17632/kntxcmtcwg
title: Data for: What should be regarded as deception in experimental economics? \\ Evidence from a survey of researchers and subjects

description: data
DOI: 10.6084/m9.figshare.28692131.v1
title: Symphonic Scenes from Lord of the Rings

description: Creative Output "Symphonic Scenes from Lord of the Rings"
DOI: 10.17632/kcbcnywygr
title: Data for article Accurate effective stress measures: Predicting creep life for 3D stresses using 2D and 1D creep rupture simulations and data

description: This dataset contains both experimental and simulation results used in Accurate effective stress measures: Predicting creep life for 3D stresses using 2D and 1D creep rupture simulations and data IMMI journal. Data are contained in CSV files. Units of each quantity are stated in the headers. Experimental data for SS304, SS316, and In100 are taken from: R. Huddleston, An improved multiaxial creep-rupture strength criterion, Journal of Pressure Vessel Technology 107 (4)(1985) 421–429. R. Huddleston, Assessment of an improved multiaxial strength theory based on creep-rupture data for type 316 stainless steel, Journal of pressure vessel technology 115 (2) (1993) 177–184. R. Huddleston, Assessment of an improved multiaxial strength theory based on creep-rupture data for Inconel 600, Tech.rep., Oak Ridge National Laboratory (ORNL) respectively.
DOI: 10.6084/m9.figshare.22793033.v2
title: Global soil antibiotics dataset (dry weight, ng/g)

description: We revisited previously published databases with records of the occurrence of antibiotics, and collected data on antibiotic concentrations in soils across the globe. Studies and datasets included in these databases were selected according to several criteria: (1) study was not duplicate, and duplicate records were checked and eliminated; (2) only soil-associated samples (within 0–20 cm of soil depth) were retained, and solid manure or waste samples were excluded; (3) soil samples that were not cultured or experimentally treated were included, and only the control soils were considered. However, soils treated by manure fertilization and wastewater irrigation, which corresponded to local land management practices, were not excluded; (4) geospatial information on sampling sites (longitude and latitude) was provided or could be extracted from maps after georeferencing; (5) antibiotic concentrations for each sampling sites were provided (or average values for replicates), and concentrations that were “not detected” or “below detection limit” were assigned zero values; (6) rather than all antibiotics, we mainly focused on environmental concentrations of tetracyclines, quinolones, and sulfonamides antibiotics in soils, as they were widely and frequently detected worldwide 51. In total, these criteria resulted in a final dataset of 659 locations, from which 1,351 soil samples were collected.
DOI: 10.6084/m9.figshare.27168972.v3
title: Table S2, Quality control of assembly (QUAST and CheckM)

description: Table S2, Quality control of assembly (QUAST and CheckM)<br>
DOI: 10.6084/m9.figshare.5172508.v7
title: S1 Data.

description: <b>S1 Data. Files 1, 2, and 3: Case data aggregated to neighborhood level with neighborhood characteristics.</b> All cases were mapped to the neighborhood level. <b>Folder A in S1 Data. Shape files.</b> Shapefiles were used to define the neighborhoods. <b>Folder B in S1 Data. Geodatabase of shapefiles. </b>Neighborhood characteristic. DOI: 10.6084/m9.figshare.5172508<b></b> <b> </b><b></b>
DOI: 10.6084/m9.figshare.7673237.v2
title: Electronic supplementary material S1: Supplementary data from Non-native honeybees disproportionately dominate the most abundant floral resources in a biodiversity hotspot.

description: Raw data used in analyses, and supplementary data regarding study sites, plant and insect species in our study, and results of supporting analyses.
DOI: 10.6084/m9.figshare.845665.v1
title: Men's dataset from the "Predicting increased blood pressure using Machine Learning" paper

description: This dataset was part of a study that investigated the prediction of increased blood pressure (systolic blood pressure &gt; 120 mmHg for women, and systolic blood pressure &gt; 139 mmHg for men) by body mass index (BMI), waist (WC) and hip circumference (HC), and waist hip ratio (WHR) using a machine learning technique named classification tree. Data were collected from 400 college students (56.3% women) from 16 to 63 years old (Mean = 23.14, Standard Deviation = 6.03). The sample was divided into two sets of each sex (training and test) for cross-validation. Fifteen trees were calculated in the training group for each sex, using different numbers and combinations of predictors. The result shows that for women BMI, WC and WHR is the combination that produces the best prediction, since it has the lowest deviance (87.42) and misclassification (.19), and the higher pseudo R2 (.43). This model presented a sensitivity of 80.86% and specificity of 81.22% in the training set, and respectively 45.65% and 65.15% in the test sample. For men BMI, WC, HC and WHC showed the best prediction with the lowest deviance (57.25) and misclassification (.16), and the higher pseudo R2 (.46). This model had a sensitivity of 72% and specificity of 86.25% in the training set, and respectively 58.38% and 69.70% in the test set. Finally, the result from the classification tree analysis was compared with traditional logistic regression, indicating that the former outperformed the latter in terms of predictive power. The new prediction algorithms provided by the current paper can be used to estimate increased blood pressure in women and hypertension in men. This can be of special interest for health professionals that have scarce material resources (such as blood pressure monitors), and that need to rely on inexpensive and easy to use diagnostic methods.
DOI: 10.6084/m9.figshare.9724856.v1
title: S6_Kasumi-1 peptides ctrl vs shRE.xlsx

description: LC-MS dataset of peptides identified in RUNX1-ETO silenced Kasumi-1 and control cells. Peptides were categorized to tryptic and non-tryptic origin based on N- and C-terminal amino acid sequences.<br>
DOI: 10.60893/figshare.apl.28651709.v1
title: Supporting Material

description: Supporting Material
DOI: 10.6084/m9.figshare.12369209.v7
title: Genome Assembly and Annotation of 84K

description: <em>Populus alba</em> × <em>P. glandulosa</em> clone 84K is widely cultivated and used as a model tree in the molecular research of woody plants because it is very easy for gene transformation. In this study, we performed PacBio sequencing and assembled the genome with a size of 781.36 Mb (mega base).
DOI: 10.6084/m9.figshare.20009874.v1
title: Net Energy Prediction Equations Used in Chinese Yellow Chickens for Energy Evaluation

description: ABSTRACT This study assessed whether the net energy (NE) system is beneficial for determining the efficiency of feed utilization in Chinese Yellow Chickens. A total of 5,600 male Chinese Yellow Chickens were assigned to eight dietary treatments (ten replicate pens per treatment and 70 chickens per pen) of differing apparent metabolizable energy (AME) and NE values. A highly significant linear correlation between dietary energy and feed conversion ratios (FCR) was observed (p&lt;0.01). The linear regression equation between metabolizable energy (ME) and FCR was: AME=−1435.5×F/G+6278.2, where R²=0.8272. The linear regression equation between NE and FCR was NE=−1350.1×F/G+5340.9, and R²=0.9551. The R² of FCR (0.9551) for diets formulated using NE values was higher than the R² of FCR (0.8272) for diets prepared on the basis of the ME system. We conclude that the NE system is more accurate than the AME system for determining the energy requirements of Chinese Yellow Chickens.
DOI: 10.6084/m9.figshare.24468397.v6
title: OpenDengue: source data

description: Source data relevant to the original data source category that was searched, located and extracted was stored in a corresponding version-specific “.csv” file. This includes date accessed, url of main landing page, steps taken through website/sitemap navigation, relevant search terms used, and other relevant notes such as positioning on page. The data source can be identified and interrogated by looking up the record UUID in the sourcedata.csv file then checking the corresponding URL or the archived download of the source (source_files.zip) in the repository.<br><br>The main OpenDengue datasets can be found here.
DOI: 10.6084/m9.figshare.29206652
title: 大兴安岭数据.xlsx

description: Data of 99 plots in the Greater Xing'an Range
DOI: 10.6084/m9.figshare.29206652.v1
title: 大兴安岭数据.xlsx

description: Data of 99 plots in the Greater Xing'an Range
DOI: 10.17632/852r5dnzd5
title: A hierarchical dataset of vegetative and reproductive growth in apple tree organs under conventional and non-limited carbon resources

description: The dataset contains eight spreadsheets presenting the seasonal growth of the apple tree (Malus domestica, Fuji Variety grafted on M9 rootstock) organs growing according to three conditions of carbon assimilate availability: trees in normal field conditions (FRU); trees in which fruit competition for carbohydrates was minimized by heavy thinning (THI); trees in which vegetative competition was minimized by complete fruit removal (DEF). Trees are grown in the Trentino Alto Adige apple production area, Northern Italy. The dataset includes information on primary and secondary shoot growth, secondary trunk growth, fruit growth. It includes  monitoring of tagged plant organs and a concurrent characterization of the same organ types sampled from other trees following the same treatments. Observations contain information useful for hierarchical data treatment, such as tree, branch and shoot numbers or canopy level (Low, Middle, High), as well as information such as treatment, sampling date, the day of the year of the measurements, and the corresponding daily accumulated growing degree days (GDD), calculated from air temperature.
DOI: 10.17632/mw3kjjs933
title: Diaphragm dysfunction

description: Images and tables, which illustrate the different tests and examination methods of the diaphragm function
DOI: 10.6084/m9.figshare.14760480.v2
title: Knowledge, Attitude and Behaviours (KAB) on diet, physical activity, and tobacco use among school students : Survey Tool

description: The uploaded files are the questionnaire used to collect the 'KAB Data'. Questionnaires are uploaded in English and the regional Indian languages - Marathi and Kannada.
DOI: 10.6084/m9.figshare.28151804.v1
title: Household integrated economic survey

description: Another dataset is taken from Social & Household Integrated Economic Survey (HIES), conducted in Pakistan during the years 2013-14. This dataset (that contains 46257 households) comprises all urban and rural areas of four provinces of Pakistan, namely Punjab, Sindh, Khyber Pakhtunkhwa, and Balochistan, while excluding FATA and military restricted areas. This dataset of either rural or urban area is first partitioned into provinces, where each province is further partitioned into different enumeration blocks. Here, the province and enumeration block (EB) are taken as PSU and SSU, respectively, whilst the rural and urban areas are two strata. This dataset can be download from the Pakistan Bureau of Statistics web-page via the link: https://www.pbs.gov.pk/content/microdata.