cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/fvr9nyd4nt.1
title: LINF_160015820

description: Protein of unknown function (DUF3184); Leishmania infantum (strain JPCM5)
DOI: 10.17632/dty7yt2j5k.1
title: Insect Biorefinery: Bioremediation and Frass Fertilizer for Sustainable Indigenous Vegetable Production

description: The data was collected from laboratory and greenhouse experiments conducted at the Animal Rearing and Quarantine Unit (ARQU) of the International Centre of Insect Physiology and Ecology (icipe), Kenya (S 01˚ 13’ 14.6’’; E 036˚ 53’ 44.5’’, 1,612 m above sea level). The lab experiments were used to determine P. ephipiatta frass fertilizer quality. Greenhouse experiment was established to assess the impact of P. ephipiatta frass fertilizer on vegetable production, in comparison with a commercial fertilizer. The data was collected between April and December 2029.
DOI: 10.17632/vc8fvc3drv.1
title: The adaptation of butterfly wing cooling

description: Data S1. Wing temperature data of the three Danainae species when the four types of specimens were fully heated.
Data S2. Wing temperature data of the 99 butterfly species when their separated wings were fully heated.
Data S3. Measured emissivity data of the three Danainae species.
Data S4. Structural data of the wing scales of the three Danainae species.
DOI: 10.17632/3vpjk28z39.1
title: Evaluating Noah-MP simulated runoff and snowpack in heavily burned Pacific-Northwest snow-dominated catchments

description: These data support results presented in the manuscript by Abolafia-Rosenzweig et al., "Evaluating Noah-MP simulated runoff and snowpack in heavily burned Pacific-Northwest snow-dominated catchments"

Abstract
Terrestrial hydrology is altered by fires, particularly in snow-dominated catchments. However, fire impacts on catchment hydrology are often neglected from land surface model (LSM) simulations. Western U.S. wildfire activity has been increasing in recent decades, and is projected to continue increasing over at least the next three decades, and thus it is important to evaluate if neglecting fire impacts in operational LSMs is a significant error source that has a noticeable signal among other sources of uncertainty. We evaluate a widely-used state-of-the-art LSM (Noah-MP) in runoff and snowpack simulations at two representative fire-affected snow-dominated catchments in the Pacific Northwest: Andrew’s Creek in Washington and Johnson Creek in Idaho. These two catchments are selected across all western U.S. fire-affected catchments because they are snow-dominated and experienced more than 50% burning in a single fire event with minimal burning outside of this event, which allows analyses of distinct pre- and post-fire periods. There are statistically significant shifts in model skills from pre- to post-fire years in simulating runoff and snowpack. At both study catchments, simulations miss enhancements in early-spring runoff and annual runoff efficiency during post-fire years, resulting in persistent underestimates of annual runoff anomalies throughout the 12-year post-fire analysis periods. Enhanced post-fire snow accumulation and melt contributes to observed but unmodeled increases of spring runoff and annual runoff efficiency at these catchments. Informing simulations with satellite observed land cover classifications, leaf area index, and vegetation fraction do not consistently improve the model ability to simulate hydrologic responses to fire disturbances.
DOI: 10.17632/4yrxm36hvs
title: Energy, protein and water gap analysis in dairy cows kept under cut and carry fodder based feeding system

description: There is a gap in dry matter, water, energy and protein intake of dairy cows kept in fodder-based diets undercut and carry feeding systems in Sub-Saharan countries, Rwanda included. A study was conducted in two contrasting areas of Rwanda: Eastern Savana and Volcanic highlands. The objective was to determine dry matter, water, protein, and energy intake in comparison to their requirements for meeting the potential milk production of lactating dairy cows. Ninety households, including 66 from the lowlands and 30 from the highlands, were randomly selected, and a total of 96 cows were included in the data collection process. About 96 samples that corresponded to different fodder mixtures fed to lactating dairy cows in surveyed households were analyzed for their dry matter (DM), crude protein (CP), neutral detergent fibre (NDF), and metabolizable energy (ME). Data on NDF intake, ME and CP intake, water, DM intake, body weight, and milk performance were also collected. Data on feed characterization were computed with Farm DESIGN Manual models by Groot and Oomen, while data for the production requirement of dairy cows under lactation were computed using LIGAPS dairy models. Data were analyzed using a general linear model with univariate analysis of the statistical package for social sciences (SPSS). Results on feed characteristics showed that the average nutritive value of offered fodder was 25% DM, 58.5% NDF, 9.8% CP, and 6 megajoules (MJ) per kg DM of ME. Results on production management showed that the average daily intake was 9kg DM; 35 litres of water; 898g of crude protein (CP) and 55 MJ ME, resulting in milk production of 8.8 litres per day in both sites. However, the average requirement for both maintenance and a target milk production of 16.5litres per day were 15kg of DM; 57 Litres of water, 1907g of CP, and 137 MJ of ME. This indicated daily deficits of 6kg DM, 21.6litres of water, 1094g of crude protein, and 83.7 MJ of ME, along with a 7.6-litre shortfall in milk yield per day. The results of the present study demonstrate the hypothesis previously posed. Findings from this analysis will serve as instruments for researchers in developing dairy diet models to improve dairy cow productivity at the household level. Demonstrating the gap in available feed resources would trigger the uptake of new feeding technologies by farmers. For dairy feed manufacturers, this would serve as a guide for proper rationing of high-concentrate ingredients rich in energy and protein in consideration of their requirements. This would contribute to improved milk production resulting in better remuneration to farmers, increased national milk pool, and per capita milk consumption.
DOI: 10.17632/4yrxm36hvs.1
title: Energy, protein and water gap analysis in dairy cows kept under cut and carry fodder based feeding system

description: There is a gap in dry matter, water, energy and protein intake of dairy cows kept in fodder-based diets undercut and carry feeding systems in Sub-Saharan countries, Rwanda included. A study was conducted in two contrasting areas of Rwanda: Eastern Savana and Volcanic highlands. The objective was to determine dry matter, water, protein, and energy intake in comparison to their requirements for meeting the potential milk production of lactating dairy cows. Ninety households, including 66 from the lowlands and 30 from the highlands, were randomly selected, and a total of 96 cows were included in the data collection process. About 96 samples that corresponded to different fodder mixtures fed to lactating dairy cows in surveyed households were analyzed for their dry matter (DM), crude protein (CP), neutral detergent fibre (NDF), and metabolizable energy (ME). Data on NDF intake, ME and CP intake, water, DM intake, body weight, and milk performance were also collected. Data on feed characterization were computed with Farm DESIGN Manual models by Groot and Oomen, while data for the production requirement of dairy cows under lactation were computed using LIGAPS dairy models. Data were analyzed using a general linear model with univariate analysis of the statistical package for social sciences (SPSS). Results on feed characteristics showed that the average nutritive value of offered fodder was 25% DM, 58.5% NDF, 9.8% CP, and 6 megajoules (MJ) per kg DM of ME. Results on production management showed that the average daily intake was 9kg DM; 35 litres of water; 898g of crude protein (CP) and 55 MJ ME, resulting in milk production of 8.8 litres per day in both sites. However, the average requirement for both maintenance and a target milk production of 16.5litres per day were 15kg of DM; 57 Litres of water, 1907g of CP, and 137 MJ of ME. This indicated daily deficits of 6kg DM, 21.6litres of water, 1094g of crude protein, and 83.7 MJ of ME, along with a 7.6-litre shortfall in milk yield per day. The results of the present study demonstrate the hypothesis previously posed. Findings from this analysis will serve as instruments for researchers in developing dairy diet models to improve dairy cow productivity at the household level. Demonstrating the gap in available feed resources would trigger the uptake of new feeding technologies by farmers. For dairy feed manufacturers, this would serve as a guide for proper rationing of high-concentrate ingredients rich in energy and protein in consideration of their requirements. This would contribute to improved milk production resulting in better remuneration to farmers, increased national milk pool, and per capita milk consumption.
DOI: 10.15468/dl.w89trq
title: Occurrence Download

description: A dataset containing 276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Zapornia pusilla (Pallas, 1776))",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 276 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004488-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/9xj37z72jw.1
title: Sierra Nevada paleochannel deposits detrital zircon U-Pb geochronology

description: The dataset contains detrital zircon U-Pb ages from sandstone samples collected from Paleogene paleochannel deposits in the Sierra Nevada and western Nevada. Samples correspond with a manuscript to be submitted to Geosphere. Data are presented from 15 new samples in Microsoft Excel spreadsheets. File "New_sample_locations" shows the sample locations in decimal degrees. The other files are analytical data spreadsheets from the samples indicated in the filenames.
DOI: 10.17632/3ntxztzxzt.1
title: Enhancing Adhesion of Fluorinated Ethylene Propylene through Atmospheric Pressure Nitrogen Plasma Treatment: A Comprehensive Adhesive Selection Approach for Optimal Peel Strength Characterization

description: Data available for the article "Enhancing Adhesion of Fluorinated Ethylene Propylene through Atmospheric Pressure Nitrogen Plasma Treatment: A Comprehensive Adhesive Selection Approach for Optimal Peel Strength Characterization"
DOI: 10.5281/zenodo.14517429
title: Data to The evolution of a novel mouthpart interlocking mechanism in ants(Hymenoptera: Formicidae)

description: This dataset contains the Data used for the publication The evolution ofnovel mouthpart interlocking 2mechanismsin ants(Hymenoptera: Formicidae) in the Zoological Journal of the Linnean Society. This includes Raw Micro-CT Scan data not yet published and not included in the Antscan project, which will be published seperately in a databank (biomedisa.info/antscan). Also included is a MS Excel spreadsheet with the Scan parameters for these scans. 

Additionally, this dataset contains volume renderings and SEM images that show the mouthparts, specifically the interlocking mechanism between maxilla and labrum for all taxa for which micro-CT scan data and/ or SEM data were available. 

It also includes the phylogenetic trees used in the analyses. These trees are originally based on Nelsen et al. (2018) but as described in the paper, are modified by including the fossil Gerontoformica, rearranging some branches according to current phylogenetic hypotheses and adapting the tree from species to genus level. The pred and palp trees are the cropped trees used for analyses including predation or palp length, as we did not have data on all genera for these characters. 

Finally, the dataset also contains result files from BayesTraits analyses of dependent evolution and of ancestral state reconstruction. In both cases, Schedule files, giving information about the reversible Jump analysis, and log files recording all parameters of the model at each iteration are provided. Additionally, stone files calculating the marginal logLikelihood of different models are provided for the pedendent and independent models of evolution. Models of dependent and independent evolution were additionally run two times, while ancestral reconstructions were only run with one chain.
DOI: 10.5281/zenodo.14517430
title: Data to The evolution of a novel mouthpart interlocking mechanism in ants(Hymenoptera: Formicidae)

description: This dataset contains the Data used for the publication The evolution ofnovel mouthpart interlocking 2mechanismsin ants(Hymenoptera: Formicidae) in the Zoological Journal of the Linnean Society. This includes Raw Micro-CT Scan data not yet published and not included in the Antscan project, which will be published seperately in a databank (biomedisa.info/antscan). Also included is a MS Excel spreadsheet with the Scan parameters for these scans. 

Additionally, this dataset contains volume renderings and SEM images that show the mouthparts, specifically the interlocking mechanism between maxilla and labrum for all taxa for which micro-CT scan data and/ or SEM data were available. 

It also includes the phylogenetic trees used in the analyses. These trees are originally based on Nelsen et al. (2018) but as described in the paper, are modified by including the fossil Gerontoformica, rearranging some branches according to current phylogenetic hypotheses and adapting the tree from species to genus level. The pred and palp trees are the cropped trees used for analyses including predation or palp length, as we did not have data on all genera for these characters. 

Finally, the dataset also contains result files from BayesTraits analyses of dependent evolution and of ancestral state reconstruction. In both cases, Schedule files, giving information about the reversible Jump analysis, and log files recording all parameters of the model at each iteration are provided. Additionally, stone files calculating the marginal logLikelihood of different models are provided for the pedendent and independent models of evolution. Models of dependent and independent evolution were additionally run two times, while ancestral reconstructions were only run with one chain.
DOI: 10.17632/7r9ws6vs6z.2
title: Adult normal PVR

description: Normal post void residual urine in healthy adults
DOI: 10.17632/jsnryhhpph.1
title: Binomial cut-level validity

description: This is an "xlsx" tabular dataset that shows the values of the number of respondents (n_critical) that are necessary to agree with a statement to validate it. 

This version covers:
- Sample size: from 5 to 1000 respondents
- Fundamentals: binomial distribution of probabilities

 How to use the dataset

The data should be applied according the "Binomial cut-level validity" technique, in validating whether an item is "Essential" or "Unnecessary" to be used in a modelling. This tecnniques is described in "“Discovering the critical number of respondents necessary to validate an item in a questionnaire: the Binomial Cut-level Content Validity".
DOI: 10.17632/fk3k9fc43c.1
title: LINF_070018400

description: amino acid transporter | AAT19; Leishmania infantum (strain JPCM5)
DOI: 10.17632/nhpzmfsn3y.1
title: LINF_070018300

description: Chorein N domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/b5fvw87kk4.1
title: Monitoring of thick vadose zone water dynamics under irrigation using a 48 m deep caisson at the Luancheng Critical Zone Observatory

description: This dataset was used to generate figures and tables for the paper entitled "Monitoring of thick vadose zone water dynamics under irrigation using a 48 m deep caisson at the Luancheng Critical Zone Observatory"
DOI: 10.17632/gwtdjj5p55.1
title: LDHU3_14.0690

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/6wpbmx3srd.1
title: Gold in sulfide fluids revisited

description: The files contain results of thermodynamic calculations of Au solubility and solute speciation which were used to build figures.
DOI: 10.17632/f8jzn29f4c.2
title: An open-source, slider-crank mechanism based pneumatic pulse generator for microfluidic cell stretch assays

description: This repository contains data related to the manuscript "An open-source, slider-crank mechanism based pneumatic pulse generator for microfluidic cell stretch assays" by S. Olson, M. Finley, and R. Thakur. The manuscript describes a custom incubator-friendly, battery-powered pressure/vacuum source instrument that can be used for microfluidic experiments. This repository contains the design files that can be used to replicate the instrument, including STL files for the 3D printed components, DXF files for the laser cut components, Arduino firmware, and electrical schematics. Instructions for assembly and use can be found within the manuscript itself, or in "BuildInstructions.pdf" within this repository.
DOI: 10.17632/xtdjv38vst.1
title: Infaunal communities and environmental variables in Senegal, West Africa

description: Infaunal communities descriptors and environmental variables sampled in stations located in the Sine Saloum reverse estuary and the Fadiouth Lagoon in the Petite Côte region (Senegal, West Africa). Samples were collected both in the intertidal and the subtidal zones.
DOI: 10.17632/3dhjbgt9cs.1
title: Data from: “The deep ocean as a major sink for terrestrial organic carbon”

description: Th-234 activities, particulate organic carbon (POC) concentrations, and stable carbon isotope ratios of POC in the East China Sea shelf and East/Japan Sea
DOI: 10.17632/6yfvs3dswb.1
title: Permanent and temporary monetary policy shocks and the dynamics of exchange rates

description: This paper asks whether different types of nominal disturbances affect exchange rates differently and whether such distinction helps understanding the short-run and long-run relations between nominal rates and exchange rates, in a context where nominal disturbances are typically seen as important drivers of exchange rate movements. Our empirical exercise relies on monthly data for exchange rates, inflation, nominal interest rates and output from 1971 to 2019, considering the U.S. and another advanced economy among the following: Great Britain, Germany, France, Australia, Switzerland, Japan and the euro area.
In sum, we find that a shock leading to a temporary increase in U.S. nominal interest rates leads to a temporary appreciation of the USD against the other currencies. In turn, a monetary policy shock leading to a permanent rise in nominal interest rates – e.g., one associated with a normalisation of monetary policy after a long period at the zero lower bound – results in a depreciation of the USD, in the short as well as over the long run that may contribute to higher (not lower) inflation also in the short run.
The tables and figures of this paper present the results of the estimation of the VECM and the impulse response functions as well as the FEVD.
DOI: 10.17632/s96kd597gr.1
title: Raw_data_supplementary_Regeneration in calcareous sponge relies on ‘purse-string’ mechanism and the rearrangements of actin cytoskeleton

description: Raw images from manuscript's supplemenraty files. Fixation method (if used) is stated as well as applied immunostaining. 

The crucial step in any regeneration process is epithelization, i.e. the restoration of epithelium structural and functional integrity. Epithelialization requires cytoskeletal rearrangements, primarily of actin filaments and microtubules. Sponges (phylum Porifera) are early branching metazoans with pronounced regenerative abilities. Calcareous sponges have a unique step during regeneration: formation of a temporary structure, regenerative membrane which initially covers a wound. It forms due to the morphallactic rearrangements of exopinaco- and choanoderm epithelial-like layers. The current study quantitatively evaluates morphological changes and characterises underlying actin cytoskeleton rearrangements during regenerative membrane formation in asconoid calcareous sponge Leucosolenia variabilis, through a combination of time-lapse imaging, immunocytochemistry, and confocal laser scanning microscopy. Regenerative membrane formation has non-linear stochastic dynamics with numerous fluctuations. The pinacocytes at the leading edge of regenerative membrane form a contractile actomyosin cable. Regenerative membrane formation either depend on its contraction or being coordinated through it. The cell morphology changes significantly during regenerative membrane formation. Exopinacocytes flatten, their area increases, while circularity decreases. Choanocytes transdifferentiate into endopinacocytes, losing microvilli collar and flagellum. Their area increases and circularity decreases. Subsequent redifferentiation of endopinacocytes into choanocytes is accompanied by inverse changes in cell morphology. All transformations are based on actin filament rearrangements similar to those characteristic of bilaterian animals. Altogether, we provide here a qualitative and quantitative description of cell transformations during reparative epithelial morphogenesis in a calcareous sponge.
DOI: 10.17632/b9xh763rsh.1
title: Dataset - Timing of deformation in the western Alps: implications from 40Ar/39Ar laser dating of syn-kinematics white micas (PhD Chapter 5)

description: This work proposes to investigate the timing of thrust propagation through a detailed analysis of six mylonitic rocks from the Mont-Blanc massif from four distinct structures (Mont-Blanc shear zones, Helvetic nappes on both sides of the Mont-Blanc and the Vallorcine-Miéville shear zone). This dataset contains the raw data from the argon dating, the EPMA chemical analysis and the EBSD orientation measurements.
DOI: 10.17632/4cbsh95rv2.1
title: Southern Ocean Cyclone March to August 2023

description: Southern Ocean Cyclone March to August 2023
DOI: 10.17632/z4ht3txn2k.1
title: Accompanying Files for paper entitled: "Genome-scale mapping of DNA damage suppressors through phenotypic CRISPR/Cas9 screens" - Zhao et al. Molecular Cell 2023

description: Accompanying Files for paper entitled: "Genome-scale mapping of DNA damage suppressors through phenotypic CRISPR/Cas9 screens" - Zhao et al. Molecular Cell 2023. This dataset contains Source and additional Data for all figures.
DOI: 10.17632/5695ctj5cm.1
title: Effect of quercetin on the morphology of chicken embryo blood cells

description: Chicken-embryo blood cells were assessed for morphological differences upon incubation with solvent control (DMSO), quercetin, methyl methanesulfonate (MMS), cadmium chloride (CdCl2) and phosphate buffered saline (PBS). After incubation, blood was extracted, transferred to glass slides, and blood smears were performed. Dry blood smears were fixed and sequentially stained with eosin Y and a mixture of methylene blue/azure B. After washing, blood smears were mounted, and slides were imaged by bright-field microscopy (400 x magnification).
DOI: 10.17632/5695ctj5cm.2
title: Effect of quercetin on the morphology of chicken embryo blood cells

description: Chicken-embryo blood cells were assessed for morphological differences upon incubation with solvent control (DMSO), quercetin, methyl methanesulfonate (MMS), cadmium chloride (CdCl2) and phosphate buffered saline (PBS). After incubation, blood was extracted, transferred to glass slides, and blood smears were performed. Dry blood smears were fixed and sequentially stained with eosin Y and a mixture of methylene blue/azure B. After washing, blood smears were mounted, and slides were imaged by bright-field microscopy (40 x magnification).