cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3843298
title: Replication Package for the Paper: "Code Smells Detection via Code Review: An Empirical Study"

description: This repository contains the data and results from the paper "Code Smells Detection via Code Review: An Empirical Study" submitted to ESEM 2020. <strong>1. data folder</strong> The data folder contains the retrieved 269 reviews that discuss code smells. Each review includes four parts: Code Change URL, Code Smell Term, Code Smell Discussion, and Source Code URL. <strong>2. scripts floder</strong> The scripts folder contains the Python script that was used to search for code smell terms and the list of code smell terms. <em>smell-term/general_smell_terms.txt</em> contains general code smell terms, such as "code smell". <em>smell-term/specific_smell_terms.txt</em> contains specific code smell terms, such as "dead code". <em>smell-term/misspelling_terms_of_smell.txt</em> contains the misspelling terms of 'smell', such as "ssell". <em>get_changes.py</em> is used for getting code changes from OpenStack. <em>get_comments.py</em> is used for getting review comments for each code change. <em>smell_search.py</em> is used for searching review comments that contain code smell terms. <strong>3. project folder</strong> The project folder contains the MAXQDA project files. The files can be opened by MAXQDA 12 or higher versions, which are available at https://www.maxqda.com/ for download. You may also use the free 14-day trial version of MAXQDA 2018, which is available at https://www.maxqda.com/trial for download. <em>Data Labeling & Encoding for RQ2.mx12</em> is the results of data labeling and encoding for RQ2, which were analyzed by the MAXQDA tool. <em>Data Labeling & Encoding for RQ3.mx12</em> is the results of data labeling and encoding for RQ3, which were analyzed by the MAXQDA tool.
DOI: 10.5281/zenodo.3847943
title: CTRPv2

description: CTRPv2 PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3847944
DOI: 10.5281/zenodo.3847944
title: CTRPv2

description: CTRPv2 PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3847944
DOI: 10.5281/zenodo.3844201
title: High-resolution wind power generation time series for Germany in the period 2000-2015

description: High-resolution wind power generation time series for Germany in the period 2000-2015. A paper describing the applied methodology can be found in this repository as well. The final temporal resolution is hourly and the spatial resolution NUTS 3. The data is stored in csv and hdf5 files. More information on the data set, e.g. missing time stamps and versioning, can be found in readme.txt.
description: {"references": ["Completion of wind turbine data sets for wind integration studies applying random forests and k-nearest neighbors in Applied Energy. https://doi.org/10.1016/j.apenergy.2017.10.044"]}
DOI: 10.15468/h3yspg
title: A revision of the genus Rhinotorus Förster, 1869 (Hymenoptera, Ichneumonidae, Ctenopelmatinae), with descriptions of three new species and an illustrated identification key

description: This dataset contains the digitized treatments in Plazi based on the original journal article Reshchikov, Alexey V. (2016): A revision of the genus Rhinotorus Förster, 1869 (Hymenoptera, Ichneumonidae, Ctenopelmatinae), with descriptions of three new species and an illustrated identification key. European Journal of Taxonomy 235 (235): 1-40, DOI: http://dx.doi.org/10.5852/ejt.2016.235
DOI: 10.15468/hsbsnh
title: Review of world genera of Ceinae, with the description of two new Palaearctic species of Spalangiopelta Masi (Hymenoptera, Chalcidoidea, Pteromalidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mitroiu, Mircea-Dan (2016): Review of world genera of Ceinae, with the description of two new Palaearctic species of Spalangiopelta Masi (Hymenoptera, Chalcidoidea, Pteromalidae). European Journal of Taxonomy 251: 1-15, DOI: http://dx.doi.org/10.5852/ejt.2016.251
DOI: 10.15468/smj56w
title: Unveiling the diversity of Phalangodus Gervais, 1842 (Opiliones: Cranaidae): descriptions of four new species from Colombia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Villarreal, Osvaldo, García, Andrés F. (2016): Unveiling the diversity of Phalangodus Gervais, 1842 (Opiliones: Cranaidae): descriptions of four new species from Colombia. European Journal of Taxonomy 242: 1-41, DOI: http://dx.doi.org/10.5852/ejt.2016.242
DOI: 10.5281/zenodo.3843647
title: Collected dataset for DEBAR

description: We share our two collected datasets and evaluation results online. The first dataset is a set of 9 buggy architectures collected by existing studies. The buggy architectures come from two studies: eight architectures were collected by a previous empirical study on TensorFlow bugs (Github/StackOverflow-IPS-id.pbtxt) and one architecture was obtained from the study that proposes and evaluates TensorFuzz (TensorFuzz.pbtxt). The second dataset contains 48 architectures from a large collection of research projects in TensorFlow Models repository. Overall, our second dataset contains a great diversity of neural architectures like CNN, RNN, GAN, HMM, and so on. Please note that we have no knowledge about whether the architectures in this dataset contain numerical bugs when collecting the dataset. For every architecture in two datasets, we extract the computation graph by using a TensorFlow API. Each extracted computation graph is represented by a Protocol Buffer file, which provides the operations (nodes) and the data flow relations (edges).
DOI: 10.5281/zenodo.3843648
title: Collected dataset for DEBAR

description: We share our two collected datasets and evaluation results online. The first dataset is a set of 9 buggy architectures collected by existing studies. The buggy architectures come from two studies: eight architectures were collected by a previous empirical study on TensorFlow bugs (Github/StackOverflow-IPS-id.pbtxt) and one architecture was obtained from the study that proposes and evaluates TensorFuzz (TensorFuzz.pbtxt). The second dataset contains 48 architectures from a large collection of research projects in TensorFlow Models repository. Overall, our second dataset contains a great diversity of neural architectures like CNN, RNN, GAN, HMM, and so on. Please note that we have no knowledge about whether the architectures in this dataset contain numerical bugs when collecting the dataset. For every architecture in two datasets, we extract the computation graph by using a TensorFlow API. Each extracted computation graph is represented by a Protocol Buffer file, which provides the operations (nodes) and the data flow relations (edges).
DOI: 10.5281/zenodo.3847975
title: gCSI

description: gCSI PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3847976
DOI: 10.5281/zenodo.3847976
title: gCSI

description: gCSI PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3847976
DOI: 10.3886/e119608v1
title: Associations Between Emotional Engagement with School and Behavioral and Psychological Outcomes Across Adolescence

description: Although a small body of research suggests that emotional engagement with school is related to youth behavioral and psychological outcomes, it remains unclear whether these associations represent causal relationships and at what age engagement matters most for student outcomes. Using data from two large, national surveys, this study uses three analytic strategies to reduce threats to causal inference and assess whether the central relationship changes as youth age. Results across both data sets are consistent with a causal relationship between emotional engagement with school and youth behavioral and psychological outcomes that decreases somewhat as youth age. Given the importance of emotional engagement for these outcomes, and the importance of avoiding problem behaviors and maintaining healthy psychological functioning for students’ long-run outcomes, research should continue to explore the ways in which schools and educational policy can influence students’ engagement.
DOI: 10.5281/zenodo.3848003
title: GRAY

description: GRAY PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3848004
DOI: 10.5281/zenodo.3848004
title: GRAY

description: GRAY PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3848004
DOI: 10.5281/zenodo.3848005
title: UHNBreast

description: UHNBreast PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3848006
DOI: 10.5281/zenodo.3848006
title: UHNBreast

description: UHNBreast PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3848006
DOI: 10.5281/zenodo.3848017
title: GRAY

description: GRAY PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3848018
DOI: 10.5281/zenodo.3848018
title: GRAY

description: GRAY PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3848018
DOI: 10.15468/me8jwz
title: Giant Sticks from Vietnam and China, with three new taxa including the second longest insect known to date (Phasmatodea, Phasmatidae, Clitumninae, Pharnaciini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bresseel, Joachim, Constant, Jérôme (2014): Giant Sticks from Vietnam and China, with three new taxa including the second longest insect known to date (Phasmatodea, Phasmatidae, Clitumninae, Pharnaciini). European Journal of Taxonomy 104: 1-38, DOI: http://dx.doi.org/10.5852/ejt.2014.104
DOI: 10.5281/zenodo.3843684
title: Data from: Genome-wide Screens Implicate Loss of Cullin Ring Ligase 3 in Persistent Proliferation and Genome Instability in TP53-Deficient Cells

description: CSV files of whole-Genome Knockout Screens for Proliferation and Tumorigenic Growth. The data is retrieved from: Title: "Genome-wide Screens Implicate Loss of Cullin Ring Ligase 3 in Persistent Proliferation and Genome Instability in TP53-Deficient Cells" DOI: https://doi.org/10.1016/j.celrep.2020.03.029 The excel sheet with data shown in figure 1B is converted to CSV files.
DOI: 10.5281/zenodo.3843685
title: Data from: Genome-wide Screens Implicate Loss of Cullin Ring Ligase 3 in Persistent Proliferation and Genome Instability in TP53-Deficient Cells

description: CSV files of whole-Genome Knockout Screens for Proliferation and Tumorigenic Growth. The data is retrieved from: Title: "Genome-wide Screens Implicate Loss of Cullin Ring Ligase 3 in Persistent Proliferation and Genome Instability in TP53-Deficient Cells" DOI: https://doi.org/10.1016/j.celrep.2020.03.029 The excel sheet with data shown in figure 1B is converted to CSV files.
DOI: 10.3886/e119605
title: Essential aspects of teacher professional development: Making research participation instructionally effective

description: Current reform efforts in science place a premium on student sense making and participation in the practices of science. Given the disparity between these activities and current teaching practices, effective means of professional development around such practices must be identified. We use a close examination of 106 science teachers participating in Research Experiences for Teachers (RET) to identify, through structural equation modeling, the essential features in supporting teacher learning from these experiences. Findings suggest that participation in RET shape science teacher practice and beliefs, which in turn influence practice. Essential features of RET include engaging teachers socially in the research context and in research projects that are personally relevant to them. The model suggests ways to maximize the professional development potential of RET intended to support engagement in disciplinary practices.
DOI: 10.3886/e119605v1
title: Essential aspects of teacher professional development: Making research participation instructionally effective

description: Current reform efforts in science place a premium on student sense making and participation in the practices of science. Given the disparity between these activities and current teaching practices, effective means of professional development around such practices must be identified. We use a close examination of 106 science teachers participating in Research Experiences for Teachers (RET) to identify, through structural equation modeling, the essential features in supporting teacher learning from these experiences. Findings suggest that participation in RET shape science teacher practice and beliefs, which in turn influence practice. Essential features of RET include engaging teachers socially in the research context and in research projects that are personally relevant to them. The model suggests ways to maximize the professional development potential of RET intended to support engagement in disciplinary practices.
DOI: 10.5281/zenodo.3848816
title: GDSC1

description: GDSC1 PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3848817
DOI: 10.5281/zenodo.3848817
title: GDSC1

description: GDSC1 PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3848817
DOI: 10.5281/zenodo.3846791
title: ADHD_Project

description: ADHD data
DOI: 10.5281/zenodo.3846792
title: ADHD_Project

description: ADHD data
DOI: 10.5281/zenodo.3846424
title: Scientific literature, molecular-interaction and chemical features of phytochemicals and drugs.

description: Scientific literature, molecular-interaction and chemical features of phytochemicals and drugs.
DOI: 10.5281/zenodo.3846425
title: Scientific literature, molecular-interaction and chemical features of phytochemicals and drugs.

description: Scientific literature, molecular-interaction and chemical features of phytochemicals and drugs.
DOI: 10.5281/zenodo.3840282
title: OntoCorp

description: <strong>OntoCorp: Embedding of biomedical corpora in ontologies</strong> Biomedical corpora are essential for the development of text-mining tools to assist in and enhance the curation of biomedical knowledge stored in scientific text. Biomedical corpora lag behind other resources in the adoption of FAIR principles. This is due to their research-driven, narrow scope, limited funding and the lack of standards, and it is aggravated by rapid obsolescence. This repository acts as a reference for a novel corpus containing annotated evidence-based assertions in journal articles. The ECO-CollecTF corpus uses the Evidence and Conclusion Ontology (ECO) as a referential framework and is the first corpus to be released ever as an ontology embedding. The files in this repository enable the recreation of the ECO embedded corpus, and the addition of new annotations to it.
DOI: 10.5281/zenodo.3840283
title: OntoCorp

description: <strong>OntoCorp: Embedding of biomedical corpora in ontologies</strong> Biomedical corpora are essential for the development of text-mining tools to assist in and enhance the curation of biomedical knowledge stored in scientific text. Biomedical corpora lag behind other resources in the adoption of FAIR principles. This is due to their research-driven, narrow scope, limited funding and the lack of standards, and it is aggravated by rapid obsolescence. This repository acts as a reference for a novel corpus containing annotated evidence-based assertions in journal articles. The ECO-CollecTF corpus uses the Evidence and Conclusion Ontology (ECO) as a referential framework and is the first corpus to be released ever as an ontology embedding. The files in this repository enable the recreation of the ECO embedded corpus, and the addition of new annotations to it.
DOI: 10.5281/zenodo.3843500
title: ECO-CollecTF OBO

description: <strong>ECO-CollecTF OBO: an ontology-embedded biomedical corpus</strong> Biomedical corpora are essential for the development of text-mining tools to assist in and enhance the curation of biomedical knowledge stored in scientific text. Biomedical corpora lag behind other resources in the adoption of FAIR principles. This is due to their research-driven, narrow scope, limited funding and the lack of standards, and it is aggravated by rapid obsolescence. This repository acts as a reference for a novel corpus containing annotated evidence-based assertions in journal articles. The ECO-CollecTF corpus uses the Evidence and Conclusion Ontology (ECO) as a referential framework and is the first corpus to be released ever as an ontology embedding. This repository contains a modified ECO OBO file that contains a custom-defined property ('annotation') enabling storage of corpus annotations within ontology terms.
DOI: 10.5281/zenodo.3843501
title: ECO-CollecTF OBO

description: <strong>ECO-CollecTF OBO: an ontology-embedded biomedical corpus</strong> Biomedical corpora are essential for the development of text-mining tools to assist in and enhance the curation of biomedical knowledge stored in scientific text. Biomedical corpora lag behind other resources in the adoption of FAIR principles. This is due to their research-driven, narrow scope, limited funding and the lack of standards, and it is aggravated by rapid obsolescence. This repository acts as a reference for a novel corpus containing annotated evidence-based assertions in journal articles. The ECO-CollecTF corpus uses the Evidence and Conclusion Ontology (ECO) as a referential framework and is the first corpus to be released ever as an ontology embedding. This repository contains a modified ECO OBO file that contains a custom-defined property ('annotation') enabling storage of corpus annotations within ontology terms.
DOI: 10.15468/s5snx9
title: Revision of the staphylinoid and ground-dwelling genus Carvalhoma Slater & Gross (Insecta: Heteroptera: Miridae: Cylapinae) of Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Namyatova, Anna A., Cassis, Gerasimos (2016): Revision of the staphylinoid and ground-dwelling genus Carvalhoma Slater & Gross (Insecta: Heteroptera: Miridae: Cylapinae) of Australia. European Journal of Taxonomy 253: 1-27, DOI: http://dx.doi.org/10.5852/ejt.2016.253
DOI: 10.5281/zenodo.3381595
title: Water Distribution--Transportation Interface Network Data

description: Water distribution network layouts (as .inp files) used in the water distribution-- transportation interface network study submitted for publication.
DOI: 10.5281/zenodo.3381596
title: Water Distribution--Transportation Interface Network Data

description: Water distribution network layouts (as .inp files) used in the water distribution-- transportation interface network study submitted for publication.
DOI: 10.25345/c5841r
title: MassIVE MSV000085462 - spinach and seaweed annotation
title: spinach and seaweed annotation related to intake biomarkers and effect biomarkers
DOI: 10.7910/dvn/l7d1fy/w4o6nj
title: offsets_bs_v5.txt

description: :unav
DOI: 10.15468/cuepnc
title: Taxonomic revision of the Afrotropical genus Megatrigon Johnson, 1898 (Diptera: Syrphidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Doczkal, Dieter, Radenković, Snežana, Lyneborg, Leif, Pape, Thomas (2016): Taxonomic revision of the Afrotropical genus Megatrigon Johnson, 1898 (Diptera: Syrphidae). European Journal of Taxonomy 238: 1-36, DOI: http://dx.doi.org/10.5852/ejt.2016.238
DOI: 10.15468/w92bur
title: Revision of the subgenus Orphnus (Phornus) (Coleoptera, Scarabaeidae, Orphninae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Frolov, Andrey V., Akhmetova, Lilia A. (2016): Revision of the subgenus Orphnus (Phornus) (Coleoptera, Scarabaeidae, Orphninae). European Journal of Taxonomy 241: 1-20, DOI: http://dx.doi.org/10.5852/ejt.2016.241
DOI: 10.15468/xczydr
title: New narrow-range endemic land snails from the sky islands of northern South Africa (Gastropoda: Streptaxidae and Urocyclidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Herbert, David G. (2016): New narrow-range endemic land snails from the sky islands of northern South Africa (Gastropoda: Streptaxidae and Urocyclidae). European Journal of Taxonomy 236 (236): 1-29, DOI: http://dx.doi.org/10.5852/ejt.2016.236
DOI: 10.5281/zenodo.3843688
title: Data citation for a forward stratigraphic-based porosity and permeability model developed for the Volve field, Norway.

description: The data, models, and script presented here are those used for developing a forward stratigraphic simulation. The data include: 24 suits of well logs, seismic data, forward stratigraphic simulation scenarios of the shallow marine depositional setting, synthetic wells derived from the stratigraphic model, and 3-D reservoir models in Eclipse and RMS formats. In addition, a short script from the property calculator tool in Petrel, which is was used to classify lithofacies-associations in the stratigraphic model is also provided. The Petrel software license and code used in GPM software to undertake these forward stratigraphic simulations cannot be provided, because Schlumberger, who are the developers of the software do not allow its code to be shared in any publication.
DOI: 10.5281/zenodo.3843689
title: Data citation for a forward stratigraphic-based porosity and permeability model developed for the Volve field, Norway.

description: The data, models, and script presented here are those used for developing a forward stratigraphic simulation. The data include: 24 suits of well logs, seismic data, forward stratigraphic simulation scenarios of the shallow marine depositional setting, synthetic wells derived from the stratigraphic model, and 3-D reservoir models in Eclipse and RMS formats. In addition, a short script from the property calculator tool in Petrel, which is was used to classify lithofacies-associations in the stratigraphic model is also provided. The Petrel software license and code used in GPM software to undertake these forward stratigraphic simulations cannot be provided, because Schlumberger, who are the developers of the software do not allow its code to be shared in any publication.
DOI: 10.15468/jfzaw2
title: A contribution to the knowledge of the genera Fissocantharis Pic, 1921 and Micropodabrus Pic, 1920 from Taiwan (Coleoptera, Cantharidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhang, Lulu, Yang, Yuxia, Okushima, Yûichi (2016): A contribution to the knowledge of the genera Fissocantharis Pic, 1921 and Micropodabrus Pic, 1920 from Taiwan (Coleoptera, Cantharidae). European Journal of Taxonomy 243: 1-37, DOI: http://dx.doi.org/10.5852/ejt.2016.243
DOI: 10.21227/5yag-0058
title: Online shopping festival experiment

description: The behavioral and ERP Data of online shopping festival experiment
DOI: 10.21227/n2np-6c56
title: Online shopping festival experiment

description: The behavioral and ERP Data of online shopping festival experiment
DOI: 10.5281/zenodo.3848193
title: CCLE

description: CCLE PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3848193
DOI: 10.5281/zenodo.3848192
title: CCLE

description: CCLE PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3848193