cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/ufrw77
title: The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology - DgoMB: Isopods

description: A research program has been initiated by the Minerals Management Service (Contract No. 1435-01-99-CT-30991) to gain better knowledge of the benthic communities of the deep Gulf of Mexico entitled “The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology.” Increasing exploration and exploitation of fossil hydrocarbon resources in the deep-sea prompted the Minerals Management Service of the U.S. Department of the Interior to support an investigation of the structure and function of the assemblages of organisms that live in association with the sea floor in the deep-sea. The program, Deep Gulf of Mexico Benthos or DGoMB, is studying the northern Gulf of Mexico (GOM) continental slope from water depths of 300 meters on the upper continental slope out to greater than 3,000 meters water depth seaward of the base of the Sigsbee and Florida Escarpments. The study is focused on areas that are the most likely targets of future resource exploration and exploitation. However, to develop a Gulf-wide perspective of deep-sea communities, sampling in areas beyond those thought to be potential areas for exploration has been included in the study design. A major enhancement in the program is the extension of the transects onto the abyssal plain of the central Gulf of Mexico through collaborative studies with Mexican scientists. This additional work effort will allow assessment of benthic communities structure and function throughout the basin by sampling the deepest habitats in the region. The program is designed to gain a better ability to predict variations in the structure and function of animal assemblages in relation to water depth, geographic location, time and overlying water mass. Biological studies are integrated with measurements of physical and chemical hydrographic parameters, sediment geochemical properties and geological characteristics that are known to influence benthic community distributions and dynamics. Eight (8) hypotheses are being tested on the basis of measures of benthic community structure. It is hypothesized that community structure varies as a function of: 1) water depth, 2) geographic location (east vs. west), 3) association with canyons, 4) association with mid-slope basins, 5) sea surface primary productivity, 6) proximity to hydrocarbon seeps, 7) time (seasonal and interannual scales), and 8) association with the base of escarpments.
DOI: 10.15468/8uazjg
title: Staatliches Museum für Naturkunde Karlsruhe_Abteilung Biowissenschaften - Referat Zoologie_Oribatida_SMNK-Taxonomische Belegsammlung ORIB

description: This dataset is part of Edaphobase. Edaphobase is a data warehouse that collects information from literature, museum collections and research data about the distribution and ecology of soil organisms (earthworms, potworms, nematodes, springtails, proturans, diplurans, moss/beetle mites, gamasina mites, centipedes, millipedes, woodlice, soil fungi and soil prokaryotes). You can discover the whole Edaphobase data here: https://portal.edaphobase.org/ To get more information about Edaphobase please go to: https://edaphobase.org/ Discover the datahttps://portal.edaphobase.org/?qxenv:action:gbif&qxenv:sources:88074
DOI: 10.15468/3q4xm7
title: Stony coral species observed in the Bajos del Norte and National Park Alacranes Reef: OCEANA Expeditions 2021

description: This dataset contains information about stony coral species recorded by photography and those observed in situ during AGRRA monitoring activities in Bajos del Norte reefs in August 2021. Also, includes information on species records of stony corals photographed in the National Park Alacranes Reef in September 2021. Both reefs are located are located in the north portion of Campeche Bank, Gulf of Mexico. OCEANA Mexico organized and carried out both expeditions during August and September 2021
DOI: 10.15468/5p55cv
title: Euphausiids of the Greater Antilles

description: Compilation of euphausiids species for the Greater Antilles (Hispaniola, Cuba, Jamaica and Puerto Rico) based on references from plankton collections in the Western Atlantic and the Caribbean Sea (Owre (Michael) and Foyo, 1972; Michael and Foyo, 1976).
DOI: 10.15468/6gc6zw
title: Castniidae

description: This dataset is the databased part of Lepidoptera from the entomological collections of the Musée des Confluences (Lyon). It comprises 70 specimens belonging to Berjot, Branger, Henrotte, Le Moult, Poulard, Pupier, Schwartz and Vaglienti collections.
DOI: 10.15468/qdtwsg
title: Zooplancton en Bahia Magdalena, Baja California Sur, Mexico

description: Organismos zooplanctonicos colectados en Bahia Magdalena, Baja alifornia Sur, Mexico en el año 2015 por parte del CICIMAR.
DOI: 10.15468/ha2uhn
title: Benthic Polychaeta (Annelida) from the continental shelf of the Southern Mexican Pacific

description: The biological material was collected on board O/V “El Puma” from the Universidad Nacional Autónoma de México, during the oceanographic expedition “Sedimento 4” carried out in February 2008. In the continental shelf of the Southern Mexican Pacific (16° 45’ – 17° 14’N; 99° 49’ – 101° 2’W), 38 stations between 42 m and 109 m depth were sampled using a Smith-McIntyre grab (0.1 m2). Samples were collected on soft bottoms, and 82 species belonging to 52 genera and 27 families of Polychaeta (Annelida) were identified. The stations were geo-referenced by the Global Positioning System (GPS) of the vessel and the environmental data of depth (m), temperature (°C), salinity (psu), dissolved oxygen (ml/L), nitrate (mmol/m3) and phosphate (mmol/m3) concentrations, organic carbon (%), sand and mud percentages were also evaluated at each station.
DOI: 10.6084/m9.figshare.25309201
title: Spatial structure-data1.xlsx

description: 我们使用Winkelmass软件计算了空间结构参数：Uniform angle(W)、Diameter dominance(U)、Species mingling(M)，进而计算forest spatial structure index(FSSI)
DOI: 10.15468/n5zwyf
title: Brachiopods MZS

description: Composed of fewer than 100 documented specimens, a third of which are fossils, the collection mostly originates from Europe or Japan. Main contributors are Ludwig Döderlein (Japan 1880-1881), Heinrich Simroth (fossils from Swabia) and Ernst Benecke (fossils from Europe)
DOI: 10.15468/byyhxu
title: Benthic marine diatoms from French coastal and transitional waters

description: The objective of this dataset is to compile the historic records of marine and brackish diatom current species and genera reported for French coastal areas since the last quarter of the 19th century. The main focus is marine benthic diatoms, as occurrence datasets for phytoplankton (REPHY dataset) and for freshwater benthic diatoms (SEEE-Diatomées dataset) already exist for French coastal and inland waters, respectively. The dataset aims to fill this gap in knowledge by compiling reports that have been more difficult to reach (e.g., books, PhD theses and other grey literature), but also published papers on microphytobenthos research. The current version of the dataset has 11511 taxonomic entries found in 49 different references, dating from 1888 to 2019. A total of 2846 different taxa were compiled, 97% to species level or below, 3% to genus level. The dataset also offers information on geographic locations at 4 different levels, namely: site, county (i.e., département), region and seaboard. It also provides data on ecology (e.g., sampled substrate, habitat, growth forms) for most taxa. Moreover, a linkage to DiatomBase and WoRMS is given via AphiaID, their unique numerical database identifier. This linkage added relevant information for each species, such as higher taxonomic ranks or its accepted valid synonym.
DOI: 10.15470/g3fpiw
title: Institut Botanic de Barcelona (IBB, CSIC-Ajuntament de Barcelona), BC-Lichen-Navas

description: Long? Nav?s y Ferr? (1858-1938) fue uno de los entom?logos m?s destacados del primer tercio del siglo XX: naturalista, bot?nico, sacerdote y profesor jesuita. Fue un cient?fico y divulgador muy activo; describi? m?s de 3.300 nuevos taxones, entre g?neros, especies y variedades, casi 2.200 corresponden al orden de los neur?pteros. Fue profesor en el Colegio del Salvador de Zaragoza, donde estuvo al frente del museo de historia natural del centro. Realiz? diferentes herbarios de l?quenes y en 1902 fund? la Sociedad Aragonesa de Ciencias Naturales y organiz? el primer congreso de naturalistas en Zaragoza (1908). La mayor parte de los ejemplares se encuentran en el Colegio del Salvador de Zaragoza, y tambi?n en el Museo de Ciencias Naturales de Barcelona. Don? su herbario a la Real Academia de Ciencias y Artes de Barcelona en 1896 y actualmente, estos 173 ejemplares se conservan en el Instituto Bot?nico de Barcelona. La liquenoteca Nav?s es una colecci?n hist?rica que, por su cuidado formato, se ha mantenido independiente de la Liquenoteca General. En esta colecci?n, encontramos muestras de l?quenes de todo el territorio espa?ol mayoritariamente, pero tambi?n incluye muestras internacionales de pa?ses como M?xico o la India. Se encuentra escaneada en su totalidad por lo que facilita las consultas a dist?ncia.
DOI: 10.26179/gkyb-ew08
title: Aurora Australis Voyage 2 1995-96 Underway Data
DOI: 10.15468/2mjypj
title: The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology - DgoMB: Amphipods

description: A research program has been initiated by the Minerals Management Service (Contract No. 1435-01-99-CT-30991) to gain better knowledge of the benthic communities of the deep Gulf of Mexico entitled “The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology.” Increasing exploration and exploitation of fossil hydrocarbon resources in the deep-sea prompted the Minerals Management Service of the U.S. Department of the Interior to support an investigation of the structure and function of the assemblages of organisms that live in association with the sea floor in the deep-sea. The program, Deep Gulf of Mexico Benthos or DGoMB, is studying the northern Gulf of Mexico (GOM) continental slope from water depths of 300 meters on the upper continental slope out to greater than 3,000 meters water depth seaward of the base of the Sigsbee and Florida Escarpments. The study is focused on areas that are the most likely targets of future resource exploration and exploitation. However, to develop a Gulf-wide perspective of deep-sea communities, sampling in areas beyond those thought to be potential areas for exploration has been included in the study design. A major enhancement in the program is the extension of the transects onto the abyssal plain of the central Gulf of Mexico through collaborative studies with Mexican scientists. This additional work effort will allow assessment of benthic communities structure and function throughout the basin by sampling the deepest habitats in the region. The program is designed to gain a better ability to predict variations in the structure and function of animal assemblages in relation to water depth, geographic location, time and overlying water mass. Biological studies are integrated with measurements of physical and chemical hydrographic parameters, sediment geochemical properties and geological characteristics that are known to influence benthic community distributions and dynamics. Eight (8) hypotheses are being tested on the basis of measures of benthic community structure. It is hypothesized that community structure varies as a function of: 1) water depth, 2) geographic location (east vs. west), 3) association with canyons, 4) association with mid-slope basins, 5) sea surface primary productivity, 6) proximity to hydrocarbon seeps, 7) time (seasonal and interannual scales), and 8) association with the base of escarpments.
DOI: 10.15468/tf8jga
title: The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology - DgoMB: Polychaetes

description: A research program has been initiated by the Minerals Management Service (Contract No. 1435-01-99-CT-30991) to gain better knowledge of the benthic communities of the deep Gulf of Mexico entitled “The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology.” Increasing exploration and exploitation of fossil hydrocarbon resources in the deep-sea prompted the Minerals Management Service of the U.S. Department of the Interior to support an investigation of the structure and function of the assemblages of organisms that live in association with the sea floor in the deep-sea. The program, Deep Gulf of Mexico Benthos or DGoMB, is studying the northern Gulf of Mexico (GOM) continental slope from water depths of 300 meters on the upper continental slope out to greater than 3,000 meters water depth seaward of the base of the Sigsbee and Florida Escarpments. The study is focused on areas that are the most likely targets of future resource exploration and exploitation. However, to develop a Gulf-wide perspective of deep-sea communities, sampling in areas beyond those thought to be potential areas for exploration has been included in the study design. A major enhancement in the program is the extension of the transects onto the abyssal plain of the central Gulf of Mexico through collaborative studies with Mexican scientists. This additional work effort will allow assessment of benthic communities structure and function throughout the basin by sampling the deepest habitats in the region. The program is designed to gain a better ability to predict variations in the structure and function of animal assemblages in relation to water depth, geographic location, time and overlying water mass. Biological studies are integrated with measurements of physical and chemical hydrographic parameters, sediment geochemical properties and geological characteristics that are known to influence benthic community distributions and dynamics. Eight (8) hypotheses are being tested on the basis of measures of benthic community structure. It is hypothesized that community structure varies as a function of: 1) water depth, 2) geographic location (east vs. west), 3) association with canyons, 4) association with mid-slope basins, 5) sea surface primary productivity, 6) proximity to hydrocarbon seeps, 7) time (seasonal and interannual scales), and 8) association with the base of escarpments.
DOI: 10.15468/64x8z7
title: The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology - DgoMB: Fish

description: A research program has been initiated by the Minerals Management Service (Contract No. 1435-01-99-CT-30991) to gain better knowledge of the benthic communities of the deep Gulf of Mexico entitled “The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology.” Increasing exploration and exploitation of fossil hydrocarbon resources in the deep-sea prompted the Minerals Management Service of the U.S. Department of the Interior to support an investigation of the structure and function of the assemblages of organisms that live in association with the sea floor in the deep-sea. The program, Deep Gulf of Mexico Benthos or DGoMB, is studying the northern Gulf of Mexico (GOM) continental slope from water depths of 300 meters on the upper continental slope out to greater than 3,000 meters water depth seaward of the base of the Sigsbee and Florida Escarpments. The study is focused on areas that are the most likely targets of future resource exploration and exploitation. However, to develop a Gulf-wide perspective of deep-sea communities, sampling in areas beyond those thought to be potential areas for exploration has been included in the study design. A major enhancement in the program is the extension of the transects onto the abyssal plain of the central Gulf of Mexico through collaborative studies with Mexican scientists. This additional work effort will allow assessment of benthic communities structure and function throughout the basin by sampling the deepest habitats in the region. The program is designed to gain a better ability to predict variations in the structure and function of animal assemblages in relation to water depth, geographic location, time and overlying water mass. Biological studies are integrated with measurements of physical and chemical hydrographic parameters, sediment geochemical properties and geological characteristics that are known to influence benthic community distributions and dynamics. Eight (8) hypotheses are being tested on the basis of measures of benthic community structure. It is hypothesized that community structure varies as a function of: 1) water depth, 2) geographic location (east vs. west), 3) association with canyons, 4) association with mid-slope basins, 5) sea surface primary productivity, 6) proximity to hydrocarbon seeps, 7) time (seasonal and interannual scales), and 8) association with the base of escarpments.
DOI: 10.15468/d8pacg
title: Larvae collected near deep-sea hydrothermal vent fields for microbiome study

description: This dataset provides the sampling locations and identifications for a total of 60 larvae collected near deep-sea hydrothermal vent fields and used in a microbiome study by Carrier et al. (2020, submitted). The larvae were collected near hydrothermal vent fields on the East Pacific Rise (EPR 9°50'N vent field), on the Mariana Back-Arc Spreading Center (near Snail and Archaean vent fields), and in Pescadero Basin (Auka vent field) in the Gulf of California. This dataset is derived from a dataset in the Biological and Chemical Oceanography Data Management Office (BCO-DMO) repository (Beaulieu et al., 2021, doi:10.26008/1912/bco-dmo.839476.1) with the addition of two Darwin Core terms recommended for the Global Biodiversity Information Facility (GBIF; countryCode and kingdom). See the dataset in BCO-DMO for acquisition description, data columns removed that were not in the Darwin Core standard (e.g., Lowest_level_taxon_name_or_morphotype, microbiome_16S_Dryad), and associatedMedia. Note that the use of the Darwin Core term habitat differs from the standard definition; we describe the habitat as "hydrothermal vent" ENVO term http://purl.obolibrary.org/obo/ENVO_00000215 for those taxa for which we are confident that the adults live at a hydrothermal vent, otherwise NotDetermined. Funding to collect specimens was from the U.S. National Science Foundation (NSF) OCE-0424953 and OCE-1028862 and the Dalio Explore Fund, and funding to standardize these data to Darwin Core for sharing through the Ocean Biodiversity Information System was from NSF DEB-1558904 and OCE-1829773.
DOI: 10.5281/zenodo.10725053
title: Dataset of modeling results.
DOI: 10.5281/zenodo.10725054
title: Dataset of modeling results.
DOI: 10.15468/6r5qgh
title: The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology - DgoMB: Meios

description: A research program has been initiated by the Minerals Management Service (Contract No. 1435-01-99-CT-30991) to gain better knowledge of the benthic communities of the deep Gulf of Mexico entitled “The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology.” Increasing exploration and exploitation of fossil hydrocarbon resources in the deep-sea prompted the Minerals Management Service of the U.S. Department of the Interior to support an investigation of the structure and function of the assemblages of organisms that live in association with the sea floor in the deep-sea. The program, Deep Gulf of Mexico Benthos or DGoMB, is studying the northern Gulf of Mexico (GOM) continental slope from water depths of 300 meters on the upper continental slope out to greater than 3,000 meters water depth seaward of the base of the Sigsbee and Florida Escarpments. The study is focused on areas that are the most likely targets of future resource exploration and exploitation. However, to develop a Gulf-wide perspective of deep-sea communities, sampling in areas beyond those thought to be potential areas for exploration has been included in the study design. A major enhancement in the program is the extension of the transects onto the abyssal plain of the central Gulf of Mexico through collaborative studies with Mexican scientists. This additional work effort will allow assessment of benthic communities structure and function throughout the basin by sampling the deepest habitats in the region. The program is designed to gain a better ability to predict variations in the structure and function of animal assemblages in relation to water depth, geographic location, time and overlying water mass. Biological studies are integrated with measurements of physical and chemical hydrographic parameters, sediment geochemical properties and geological characteristics that are known to influence benthic community distributions and dynamics. Eight (8) hypotheses are being tested on the basis of measures of benthic community structure. It is hypothesized that community structure varies as a function of: 1) water depth, 2) geographic location (east vs. west), 3) association with canyons, 4) association with mid-slope basins, 5) sea surface primary productivity, 6) proximity to hydrocarbon seeps, 7) time (seasonal and interannual scales), and 8) association with the base of escarpments. This dataset includes the meiofauna abundance and biomass that were observed in this study. Meiofauna include nematode worms, harpacticoid copepods, and several other taxa. In some studies benthic forams are also included, but in this model, forams are considered part of the microbiota because they are single-celled organisms, rather than metazoans.
DOI: 10.15468/t789xj
title: Mollusca collection of Yamaguchi prefectural Yamaguchi Museum

description: Mollusca Specimens deposited at the Department of Animal, Yamaguchi prefectural Yamaguchi Museum
DOI: 10.15472/wlnpoc
title: Colección de Microorganismos con Interés Biofertilizante (CMIB)

description: La Corporación Colombiana de Investigación Agropecuaria - Agrosavia cuenta con la Colección de Microorganismos con Interés Biofertilizante (CMIB), una colección de bacterias y hongos formadores de micorrizas arbusculares con la capacidad para estimular el desarrollo y crecimiento vegetal. La CMIB consta de una gran colección de rizobios o microorganismos que establecen una relación simbiótica con leguminosas que da lugar la formación de una estructura especializada llamada nódulo con la capacidaad de fijar nitrógeno atmosférico. Adicionalmente, cuenta con microorganismos endófitos y epífitos que a través de diversos mecanismos pueden mejorar el crecimiento de las plantas en condiciones adecuadas o adversas. Las accesiones de la CMIB tienen diversos orígenes y está constatemente siendo fortalecida mediante el trabajo de diversos proyectos de investigación de Agrosavia. Esta es una colección de referencia para la academia e investigación .
description: A la fecha, la colección mantiene y conserva 354 accesiones bacterianas y 25 accesiones de hongos formadores de micorrizas arbusculares (HFMA) colectados de diferentes departamentos de Colombia, además cuenta con cepas de referencia donadas por instituciones internacionales que ayudan a los estudios y caracterizaciones realizadas a los microorganismos. Además, el recurso se compone de bacterias dentro de los filos Proteobacteria (clases alfa-, beta-, y gamma-proteobacteria) y Firmicutes (principalmente familia Bacillaceae), y de hongos HFMA (principalmente Glomeromycota).