cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3txktk43nz.1
title: Detailed results for "Vehicle scheduling for rental-with-driver services"

description: We report detailed computational results for the instances included in the paper "Vehicle scheduling for rental-with-driver services"
DOI: 10.17632/g5bkgdd4cb.1
title: Cereal_Crop_Yield_Ethiopia

description: This dataset is the Cereal Crop yield, temperature, rainfall, and pesticides dataset for Ethiopia starting from 1961 up to 2018
DOI: 10.17632/yscys7vc5v.1
title: THAP1 is cell type dependent regulator of SP1 family crucial for dystonic syndromes in human and rat

description: Supplementary data files
DOI: 10.17632/pmtgvv59k4.14
title: Golden Droplets Episodes

description: Excel and other file sources for the Golden Droplets series
DOI: 10.17632/ck365nbpk9.1
title: SemanticSimilarityWithConceptSenses

description: This dataset represents the results of the experimentation of a method for evaluating semantic similarity between concepts in a taxonomy.
The method is based on the information-theoretic approach and allows senses of concepts in a given context to be considered.
Relevance of senses is calculated in terms of semantic relatedness with the compared concepts.
In a previous work [9], the adopted semantic relatedness method was the one described in [10], while in this work we adopted the one described in [11]. 
This results in an improvement of the method.

The dataset is composed of two folders, which contain the results of the previous and the new experimentation, respectively. 
In particular, in each folder there is a set of files, each referring to one pair of the well-known Miller and Charles benchmark dataset [1] for assessing semantic similarity.
For each pair of concepts, the same 28 pairs are all considered as possible different contexts. 
We applied our proposal by extending 7 methods for computing semantic similarity in a taxonomy, selected from the literature.
The methods considered in the experiment are referred to as (R[2], W&P[3], L[4], J&C[5], P&S[6], A[7], A&M[8]):

REFERENCES
[1] Miller G.A., Charles W.G. 1991. Contextual correlates of semantic similarity. Language and Cognitive Processes 6(1).
[2] Resnik P. 1995. Using Information Content to Evaluate Semantic Similarity in a Taxonomy. Int. Joint Conf. on Artificial Intelligence, Montreal.
[3] Wu Z., Palmer M. 1994. Verb semantics and lexical selection. 32nd Annual Meeting of the Associations for Computational Linguistics.
[4] Lin D. 1998. An Information-Theoretic Definition of Similarity. Int. Conf. on Machine Learning.
[5] Jiang J.J., Conrath D.W. 1997. Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy. Inter. Conf. Research on Computational Linguistics.
[6] Pirrò G. 2009. A Semantic Similarity Metric Combining Features and Intrinsic Information Content. Data Knowl. Eng, 68(11).
[7] Adhikari A., Dutta B., Dutta A., Mondal D., Singh S. 2018. An intrinsic information content-based semantic similarity measure considering the disjoint common subsumers of concepts of an ontology. J. Assoc. Inf. Sci. Technol. 69(8).
[8] Adhikari A., Singh S., Mondal D., Dutta B., Dutta A. 2016. A Novel Information Theoretic Framework for Finding Semantic Similarity in WordNet.  CoRR, arXiv:1607.05422, abs/1607.05422.
[9] Formica A., Taglino F. 2021. An Enriched Information-Theoretic Definition of Semantic Similarity in a Taxonomy. IEEE Access, vol. 9.
[10] Schuhmacher M., Ponzetto S. P. 2014. Knowledge-based Graph Document Modeling. 7th ACM International Conference on Web Search and Data Mining.
[11] El Vaigh C. B., Goasdoué F.,  Gravier G., Sébillot P. 2020. A Novel Path-Based Entity Relatedness Measure for Efficient Collective Entity Linking. ISWC 2020.  

Finally, in each file, the Pearson's and the Spearman's correlations of our proposal with respect to human judgement is reported.
DOI: 10.17632/vrn5rwg296.3
title: Geomorphological Inventory of glacial, periglacial and paraglacial landforms of the Northern Patagonian Andes 

description: The cold climate events of the Upper Cenozoic greatly modified the landscape of the Northern Patagonian Andes (NPA), where a large number of glacial, periglacial and paraglacial landforms are preserved. A detailed geomorphological inventory of glacial, periglacial and paraglacial landforms described from seven mountain range of the NPA is here presented. The analysis of satellite images and digital elevation model, fieldwork research  and its integration in a Geographical Information System were used to recognize erosive landforms (glacial cirques, glacial valleys, nivation hollows), depositional landforms (moraines, rock glacial, solifluction lobes, nivation crests) and mass wasting landforms (debris slopes, debris cones, debris flow, and others). More than 550 active and relict morphosedimentary units were identified inside glacial valleys. The geomorphological analysis and the corresponding cartographic elaboration carried on in a large number of mountain valleys, were allowed to define for each studied valley, a local temporal-spatial sequence. Four cold climate stabilization were interpreted from the regional analisys, being the event "A" the oldest, and "D" the last cold climate event before the present climate conditions.
DOI: 10.17632/8hp4hscf6n.1
title: The application of riboswitches for human gut bacterial classification and identification

description: Table 1 shows the list of species in each phylum, which contains three replicate results of a stool sample from an individual. Table 2 shows the list of species in each phylum of three stool samples from three individuals. The identification of the species is based on the comparison between the sequencing results and the SILVA 16S rRNA library. These files (RF00177_taxonomy_all.out, RF00059_taxonomy_all.out, RF00174_taxonomy_all.out, RF00162_taxonomy_all.out, RF00379_taxonomy_all.out, RF00504_taxonomy_all.out, RF01734_taxonomy_all.out) contain species listed in the Rfam databases.
DOI: 10.17632/p546xcmthr.2
title: Kristiansen_Supplemental_materials_# jc.2020-03086

description: Kristiansen_Supplemental_Materials
DOI: 10.17632/tm5jrph8hv.1
title: Presidential Dataset

description: The Presidential dataset consists of a collection of articles written about Trump and Obama. Articles' authors, sources, and political ideology are included in the dataset.
DOI: 10.5281/zenodo.5589621
title: UPLC-QTOF data from a river sample extracted with various solid phase extraction phases - mz5 files with scans in centroid spectrum format

description: This dataset has been acquired from a river sample (Marne River, France) collected as part of the Screenatm'eau project (Observatoire des Sciences de l’Univers - Enveloppes FLUides de la Ville à l’Exobiologie - OSU-EFLUVE, Université Paris-Est Créteil). The sample was processed by solid-phase extraction using multiple cartridges and phases, in triplicates (see the list of samples in the samplemetadata.csv file). Data was acquired with a SYNAPT HDMS QTOF (Waters) coupled with a Nano ACQUITY UPLC System (Waters), in ESI positive mode. Raw data was converted using Proteowizard MSConvert version 3.0.21288, using zlib compression, with the CWT peakpicking algorithm (snr=0, peakSpace=0) to transform profile to centroid data, and the zeroSamples option (removeExtra 1-). The chosen output formats were .mzML and .mz5. A list of markers was obtained after peak picking and alignment across all samples using the PatRoon R package with the OpenMS algorithm, and exported as a markertable.csv file. Each detected marker has m/z and retention time values (see the variablemetadata.csv file), and intensity values in all samples (markertable.csv). For file naming explanation and details about each SPE phase, see the readme.txt file.
DOI: 10.5281/zenodo.5589620
title: UPLC-QTOF data from a river sample extracted with various solid phase extraction phases - mz5 files with scans in centroid spectrum format

description: This dataset has been acquired from a river sample (Marne River, France) collected as part of the Screenatm'eau project (Observatoire des Sciences de l’Univers - Enveloppes FLUides de la Ville à l’Exobiologie - OSU-EFLUVE, Université Paris-Est Créteil). The sample was processed by solid-phase extraction using multiple cartridges and phases, in triplicates (see the list of samples in the samplemetadata.csv file). Data was acquired with a SYNAPT HDMS QTOF (Waters) coupled with a Nano ACQUITY UPLC System (Waters), in ESI positive mode. Raw data was converted using Proteowizard MSConvert version 3.0.21288, using zlib compression, with the CWT peakpicking algorithm (snr=0, peakSpace=0) to transform profile to centroid data, and the zeroSamples option (removeExtra 1-). The chosen output formats were .mzML and .mz5. A list of markers was obtained after peak picking and alignment across all samples using the PatRoon R package with the OpenMS algorithm, and exported as a markertable.csv file. Each detected marker has m/z and retention time values (see the variablemetadata.csv file), and intensity values in all samples (markertable.csv). For file naming explanation and details about each SPE phase, see the readme.txt file.
DOI: 10.17632/59bf3hb2w5.2
title: ETHYL 2,3-DIARYL-3-(4-ARYL-1,2,3-SELENADIAZOL-5-YL)PROPANOATES

description: Supplementary data for the article: Synthesis, characterization and anti-microbial activity of ethyl2,3-diaryl-3-(4-aryl-1,2,3-selenadiazol-5-yl)propanoates
DOI: 10.17632/vns2kp3zt3.1
title: Engineering Change Management - Classification Appendix of Literature Review

description: Appendix of a Literature Review on Engineering Change Management, to be published.
DOI: 10.17632/483vh8mdrv.1
title: Effects of transition from dry forest to pasture on chemical characteristics and enzymatic activity in soils in Northeastern Brazil

description: "Soil Chemistry and Enzymes" is a dataset captured from soils from the 0-10 cm layer of pastures and forests of three municipalities located in the Microregion of Garanhuns, Pernambuco state (Northeast Brazil): Brejão (8°59'39.95"S; 36°32'22.69" W), Garanhuns (8°58'27.25"S; 36°27'8.12"W) and São João (8°48'35.77"S; 36°24'25.19"W). This study evaluated the transition from dry forest (FO) to pastures in a varied productive state, one with less activity (PA) and another more productive (PB). This pasture state was defined based on the Normalized Difference Vegetation Index (NDVI), calculated from images from the Multispectral and Panchromatic Wide-Scan Camera (WPM) of the CBERS 4A satellite (L4) (INPE - Brazil).
DOI: 10.17632/grxxmfj4yf.1
title: das Potenzial des West Java International Airport zur Erleichterung des Luftverkehrs in der östlichen Region von West Java und Zentral-Java

description: Der West Java International Airport oder BIJB ist der zweitgrößte Flughafen Indonesiens. Der Bau wurde 2018 abgeschlossen. Aktivitäten und Funktionen wurden durch Covid-19 gestört, was die Aktivitäten in allen Bereichen behindert. guten Umgang mit Covid-19 und der fast abgeschlossenen Fertigstellung der Mautstraße Cisumdawu soll die Nutzung des Flughafens gemäß dem BIJB-Entwicklungsziel in Majalengka wieder schneller laufen, damit er besser funktionieren kann.
DOI: 10.17632/hwvfp4jzy2.1
title: Dataset on women empowerment in ICT institute Pakistan

description: This Dataset is about Women Faculty in ICT institutes of Pakistan. The dataset consists of parameters:  Name, Qualification, Department, Designation, Area of Interest, and Institute Name.  This data is collected online from different online websites. This Dataset is collected between the time-duration of  August 2021 to October 2021.
DOI: 10.17632/ysgkfmk6g2.3
title: Rooftop Solar PV Dataset of the College of Engineering in Afe Babalola University Ado-Ekiti

description: The research set out to determine the amount of power that could be generated from the utilization of rooftop spaces on the College of Engineering, Afe Babalola University Ado-Ekiti, Nigeria. In so doing, the total surface areas, useful surface areas and the number of panels that could be fitted onto the rooftops were obtained. This data represents the total roof surface areas and useful roof surface areas (for the installation of 300W solar PV panels) of the College. It also represents the number of solar PV panels that can be fit onto the different rooftop orientations of each building (wing) in the College.  The rated capacity of each orientation of the rooftop can also be obtained with the use of this data. The 3D Model of the College Rooftop is shown in Figure 1. The 3D Model showing the PV panels placed on the College rooftop is shown in Figure 2. The total roof surface areas and useful roof surface areas of the various wings and buildings in the College of Engineering are shown in Table 1. The percentage of each rooftop that can be used for the installation of 300W solar PV panels is also shown in Table 1. The number of solar PV panels that can fit onto the different rooftop orientations (North to South etc.) of the various wings and buildings in the College is shown in Table 2. These Figures and Tables are present in the attached file titled "Raw Data.docx".
DOI: 10.17632/t5xjphwzrg.1
title: source data

description: We found that microRNA-25 (miR-25) expression was significantly upregulated in the lung tissues of mice infected with Bacillus Calmette-Guerin (BCG) and macrophages infected with Mtb or BCG, especially in the early stages of infection. MiR-25 can significantly increase the survival of Mtb and BCG in macrophages. We validated that miR-25 targets the NPC1 protein located on the lysosomal membrane, resulting in damage to lysosomal function, thereby inhibiting autophagolysosome formation and promoting the survival of Mtb and BCG. We demonstrated that mice lacking miR-25 are more resistant to BCG infection. In addition, we found that Rv1759c induces the expression of miR-25 through NFKBIZ. Together, we reveal a new mechanism by which Mtb regulates NPC1 to influence lysosomal function and increase the survival of Mtb through the autophagy pathway, providing an early biomarker for TB infection and a new treatment strategy against TB.
DOI: 10.17632/5vpsd5d9zw.1
title: Prenatal interleukin 6 elevation increases glutamatergic synapse density and disrupts hippocampal connectivity in offspring. Mirabella et al. 

description: Raw data Mirabella et al. IMMUNITY
DOI: 10.23728/b2share.f107b16a30fc4e019124e15624e9888f
title: TAD-Net: An Approach for Realtime Action Detection Based on TCN and GCN in Digital Twin Shop-floor

description: We proposed a real-time detection approach for shop-floor production action, this approach took the sequence data of continuous human skeleton joints sequence as input, reconstructed the Joint Classification-Regression Recurrent Neural Networks (JCR-RNN) based on Temporal Convolution Network (TCN) and Graph Convolution Network (GCN), constructed our Temporal Action Detection Net (TAD-Net), realized real-time shop-floor production action detection.
DOI: 10.5281/zenodo.5544556
title: Data from: Flattening the curve: approaching complete sampling for diverse beetle communities

description: <strong>DATA FROM:</strong> Burner, R., J. Åstrom, T. Birkemoe, A. Sverdrup-Thygeson. 2021. Flattening the curve: approaching complete sampling for diverse beetle communities. <em>Insect Conservation and Diversity</em> https://doi.org/10.1111/icad.12540 <strong>ACKNOWLEDGEMENTS</strong> This research was funded by the Norwegian Environment Directorate as part of an ‘Agreement on monitoring hollow oaks and insects in hollow oaks’. The Norwegian University of Life Sciences (NMBU) workshop designed and produced the cross-pane flight intercept traps. Thanks to Sindre Ligaard for identifying the beetle species, and to Lindsay Burner, Ruben Roos, and Ross Wetherbee for assistance in the field. High-performance computing resources were provided by Frederick H. Sheldon and Louisiana State University (LSU HPC). <strong>INFORMATION</strong> This dataset contains all data necessary to reproduce the analysis in the resulting manuscript. Briefly, 110 insect traps were set for 3 months in a single forest stand in Ås, Norway in 2020. This dataset includes trap locations, number of individuals of each species captured in each trap, trap type, and forest covariates collected around the traps. For more detailed information see manuscript and README file. From abstract of manuscript: Insects are a hyper diverse and ecologically important group. Their high diversity, however, presents challenges in sampling methodology, because rare species are unreliably detected with low sampling effort. However, the relationship between effort and species detections, critical for effective monitoring and evaluation of population trends, is too seldom quantified. We sampled forest beetles for three months in a 4-ha stand of mixed deciduous forest in southeastern Norway using 110 flight intercept (four types) and Malaise traps, the highest trap density (29 traps/ha) that we have seen reported. We examined species accumulation curves to quantify the benefits of each additional trap, compared capture rates among several trap designs and trap emptying frequencies, and tested for spatial autocorrelation. In total we captured 566 beetle taxa (19,854 individuals) from 52 families, yet our species accumulation curve was only beginning to flatten. Trap types differed considerably in their effectiveness. Nevertheless, twenty of our most effective window traps detected 75% of all taxa in our dataset. We found no evidence of spatial correlation within the scale of the study (100 m radius), nor did trap-level forest covariates (5 m radius) explain much variation. This implies that low to moderate sampling effort dramatically underestimates species richness, but that a limited number of effective traps can nonetheless achieve relatively thorough sampling for some applications. Immediate trap surroundings and spacing appeared unimportant. But, insect ecologists should take particular care in selecting trap types and be cautious comparing studies that employed different trap types.
DOI: 10.5281/zenodo.5544555
title: Data from: Flattening the curve: approaching complete sampling for diverse beetle communities

description: <strong>DATA FROM:</strong> Burner, R., J. Åstrom, T. Birkemoe, A. Sverdrup-Thygeson. 2021. Flattening the curve: approaching complete sampling for diverse beetle communities. <em>Insect Conservation and Diversity</em> https://doi.org/10.1111/icad.12540 <strong>ACKNOWLEDGEMENTS</strong> This research was funded by the Norwegian Environment Directorate as part of an ‘Agreement on monitoring hollow oaks and insects in hollow oaks’. The Norwegian University of Life Sciences (NMBU) workshop designed and produced the cross-pane flight intercept traps. Thanks to Sindre Ligaard for identifying the beetle species, and to Lindsay Burner, Ruben Roos, and Ross Wetherbee for assistance in the field. High-performance computing resources were provided by Frederick H. Sheldon and Louisiana State University (LSU HPC). <strong>INFORMATION</strong> This dataset contains all data necessary to reproduce the analysis in the resulting manuscript. Briefly, 110 insect traps were set for 3 months in a single forest stand in Ås, Norway in 2020. This dataset includes trap locations, number of individuals of each species captured in each trap, trap type, and forest covariates collected around the traps. For more detailed information see manuscript and README file. From abstract of manuscript: Insects are a hyper diverse and ecologically important group. Their high diversity, however, presents challenges in sampling methodology, because rare species are unreliably detected with low sampling effort. However, the relationship between effort and species detections, critical for effective monitoring and evaluation of population trends, is too seldom quantified. We sampled forest beetles for three months in a 4-ha stand of mixed deciduous forest in southeastern Norway using 110 flight intercept (four types) and Malaise traps, the highest trap density (29 traps/ha) that we have seen reported. We examined species accumulation curves to quantify the benefits of each additional trap, compared capture rates among several trap designs and trap emptying frequencies, and tested for spatial autocorrelation. In total we captured 566 beetle taxa (19,854 individuals) from 52 families, yet our species accumulation curve was only beginning to flatten. Trap types differed considerably in their effectiveness. Nevertheless, twenty of our most effective window traps detected 75% of all taxa in our dataset. We found no evidence of spatial correlation within the scale of the study (100 m radius), nor did trap-level forest covariates (5 m radius) explain much variation. This implies that low to moderate sampling effort dramatically underestimates species richness, but that a limited number of effective traps can nonetheless achieve relatively thorough sampling for some applications. Immediate trap surroundings and spacing appeared unimportant. But, insect ecologists should take particular care in selecting trap types and be cautious comparing studies that employed different trap types.
DOI: 10.5281/zenodo.5566879
title: Dataset of live imaging of RNA Polymerase II CTD phosphorylation in zebrafish embryos

description: Images are recruited RNA polymerase II Serine 5 (Pol II Ser5P) and RNA polymerase II Serine 2 (Pol II Ser2P) in live sphere stage zebrafish embryos, visualized with antibody fragments (Fab) labelled with Janelia Fluor 647 and Alexa Fluor 488, respectively.<br> <br> Dataset "<strong>EmbryoC_20ms_040.nd2" </strong>is recorded by 20 ms exposure time and contains 120 frames. Dataset "<strong>EmbryoC_50ms_042.nd2</strong>" contains images recorded with 50 ms exposure time and contains 61 frames.
DOI: 10.15482/usda.adc/1523392
title: Data from: Multiscale climatological albedo look-up maps derived from moderate resolution imaging spectroradiometer BRDF/albedo products
DOI: 10.5281/zenodo.5585334
title: Whole Brain Drosophila Larval Neurons

description: Example intact whole brains from female and male Drosophila larva expressing functional neuron markers associated with manuscript - <strong>Intact Drosophila Whole Brain Cellular Quantitation reveals Sexual Dimorphism</strong>. Wei Jiao, Gard Spreemann, Evelyne Ruchti, Soumya Banerjee, Ying Shi, R. Steven Stowers, Kathryn Hess and Brian D. McCabe Brain Mind Institute, EPFL - Swiss Federal Institute of Technology Lausanne, Switzerland https://mccabelab.org See ReadMe file for detailed genotypes and methods.
DOI: 10.5281/zenodo.5585333
title: Whole Brain Drosophila Larval Neurons

description: Example intact whole brains from female and male Drosophila larva expressing functional neuron markers associated with manuscript - <strong>Intact Drosophila Whole Brain Cellular Quantitation reveals Sexual Dimorphism</strong>. Wei Jiao, Gard Spreemann, Evelyne Ruchti, Soumya Banerjee, Ying Shi, R. Steven Stowers, Kathryn Hess and Brian D. McCabe Brain Mind Institute, EPFL - Swiss Federal Institute of Technology Lausanne, Switzerland https://mccabelab.org See ReadMe file for detailed genotypes and methods.