cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nb4dm2
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mizuhopecten yessoensis (Jay, 1857)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 217 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060256-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6qrpb
title: Occurrence Download

description: A dataset containing 2723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((34.45347 -10.90559,186.54653 -10.90559,186.54653 49.90559,34.45347 49.90559,34.45347 -10.90559))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Paguma larvata (C.E.H.Smith, 1827)"
 ]
}

 The dataset includes 2723 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0216805-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgo7kv
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-19.38478 0.63357,17.38478 0.63357,17.38478 15.36643,-19.38478 15.36643,-19.38478 0.63357))",
 "HasCoordinate is true",
 "TaxonKey is Crocidura grandiceps Hutterer, 1983",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 89 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050913-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgqds5
title: Occurrence Download

description: A dataset containing 3389 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pteruthius xanthochlorus J.E.Gray & G.R.Gray, 1847"
 ]
}

 The dataset includes 3389 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060253-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpza8x
title: Occurrence Download

description: A dataset containing 407096 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is BirdMap Data - GPS tracking of Storks, Cranes and birds of prey, breeding in Northern and Eastern Europe"
 ]
}

 The dataset includes 407096 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196662-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.euk6rx
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-104.04104 19.40031,-104.08464 19.40649,-104.09254 19.37662,-104.08533 19.36323,-104.07168 19.35679,-104.05641 19.35576,-104.04782 19.35954,-104.03186 19.38151,-104.03461 19.38924,-104.04104 19.40031))",
 "HasCoordinate is true",
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 65 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050914-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqg8qp
title: Occurrence Download

description: A dataset containing 377 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Hipposideros calcaratus (Dobson, 1877)"
 ]
}

 The dataset includes 377 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062714-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mubee8
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycalopex sechurae (Thomas, 1900)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is INTRODUCED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is INVASIVE"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is NATURALISED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 {
 "not" : {
 "CoordinateUncertaintyInMeters" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 50 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0261746-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdmww5
title: Occurrence Download

description: A dataset containing 27563 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Procyon lotor (Linnaeus, 1758)"
 ]
}

 The dataset includes 27563 records from 228 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050915-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13120/a1a57116-afc6-4280-8312-e5dc94a15976
title: Contaminants: Pesticides and biocides - DDT-DDE-DDD (measurements percentages), v2024
title: Contaminants: Pesticides and biocides - DDT-DDE-DDD (measurements percentages), v2024

description: This product displays for DDT, DDE, and DDD, positions with percentages of all available data values per group of animals that are present in EMODnet regional contaminants aggregated datasets, v2024. The product displays positions for all available years.
DOI: 10.15468/dl.5ftzg6
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-84.91940 40.19806,-77.88815 40.19806,-77.88815 43.01056,-84.91940 43.01056,-84.91940 40.19806))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Petromyzon Linnaeus, 1758"
 ]
}

 The dataset includes 158 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069121-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14199388
title: Retinomics.org

description: The retinomics portal is a web interface to explore the effect that different biological factors have on the morphology of the retina.

A variety of omics are included in this project including genomics, metabolomics, phenomics, other traits.
DOI: 10.5281/zenodo.14199389
title: Retinomics.org

description: The retinomics portal is a web interface to explore the effect that different biological factors have on the morphology of the retina.

A variety of omics are included in this project including genomics, metabolomics, phenomics, other traits.
DOI: 10.15468/dl.qerdc4
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-83.26775 42.31890,-82.31261 42.31890,-82.31261 42.70095,-83.26775 42.70095,-83.26775 42.31890))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Petromyzon Linnaeus, 1758"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069127-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13120/25346022-3005-45b7-a1b8-d2fbc1983856
title: Contaminants: Hydrocarbons (PAH) - Benzo(a)pyrene (measurements counts) Per Year, v2024
title: Contaminants: Hydrocarbons (PAH) - Benzo(a)pyrene (measurements counts) Per Year, v2024

description: This product displays for Benzo(a)pyrene, positions with values counts that have been measured per matrix for each year and are present in EMODnet regional contaminants aggregated datasets, v2024. The product displays positions for every available year.
DOI: 10.15468/dl.fhphza
title: Occurrence Download

description: A dataset containing 2640 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bison bonasus (Linnaeus, 1758)"
 ]
}

 The dataset includes 2640 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069125-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djy32t
title: Occurrence Download

description: A dataset containing 5006 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "MediaType is Image",
 "TaxonKey is Lactarius deliciosus (L.) Gray"
 ]
}

 The dataset includes 5006 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069129-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13120/3696344d-57d9-44de-899a-11d0fae13065
title: Contaminants: Pesticides and biocides - DDT-DDE-DDD (median values), v2024
title: Contaminants: Pesticides and biocides - DDT-DDE-DDD (median values), v2024

description: This product displays for DDT, DDE, and DDD, median values since 2012 that have been measured per matrix and are present in EMODnet regional contaminants aggregated datasets, v2024. The median values ranges are derived from the following percentiles: 0-25%, 25-75%, 75-90%, &gt;90%. Only "good data" are used, namely data with Quality Flag=1, 2, 6, Q (SeaDataNet Quality Flag schema). For water, only surface values are used (0-15 m), for sediment and biota data at all depths are used.
DOI: 10.15468/dl.32c66p
title: Occurrence Download

description: A dataset containing 21317 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Martes americana (Turton, 1806)"
 ]
}

 The dataset includes 21317 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069128-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/f78p5z0g
title: Pathogen and Contaminant Exposure Data from Southern Beaufort Sea Polar Bears, 2007-2014

description: These were data collected from polar bears from the Southern Beaufort Sea during the spring between 2007 and 2014. Data include individual ID, capture date, sex and age class, whether individuals visited bowhead whale carrion sites, exposure status relative to five pathogens, and concentrations of certain persistent organic pollutants.
DOI: 10.13120/76861f7c-bcf5-46ac-91b0-5ab4f16dd297
title: Contaminants: Pesticides and biocides - Hexachlorobenzene (measurements percentages), v2024
title: Contaminants: Pesticides and biocides - Hexachlorobenzene (measurements percentages), v2024

description: This product displays for Hexachlorobenzene, positions with percentages of all available data values per group of animals that are present in EMODnet regional contaminants aggregated datasets, v2024. The product displays positions for all available years.
DOI: 10.15468/dl.phte6q
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "InstitutionCode is one of (universidad icesi (icesi), amnh, universidad del valle, instituto de investigación de recursos biológicos alexander von humboldt (iavh), universidad nacional de colombia (unal), universidad del quindío (uniquindío), universidad de caldas (ucaldas), iavh)",
 "TaxonKey is Andinobates bombetes (Myers & Daly, 1980)"
 ]
}

 The dataset includes 213 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069132-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6v9vkx
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galanthus plicatus subsp. plicatus"
 ]
}

 The dataset includes 90 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069130-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6bk2a4
title: Occurrence Download

description: A dataset containing 16934 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lasiurus borealis (Müller, 1776)"
 ]
}

 The dataset includes 16934 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069131-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13120/53791a89-cacc-4689-87ff-1a7ee56a6aca
title: Contaminants: Hydrocarbons (PAH) - Anthracene (measurements counts) Per Year, v2024
title: Contaminants: Hydrocarbons (PAH) - Anthracene (measurements counts) Per Year, v2024

description: This product displays for Anthracene, positions with values counts that have been measured per matrix for each year and are present in EMODnet regional contaminants aggregated datasets, v2024. The product displays positions for every available year.
DOI: 10.15468/dl.dt8r9v
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galanthus plicatus subsp. plicatus"
 ]
}

 The dataset includes 90 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069134-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxdbc9
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Living Specimen)",
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Cirsium arvense (L.) Scop.",
 "Year 1000-2025"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069135-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j39xwf
title: Occurrence Download

description: A dataset containing 22831 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepus americanus Erxleben, 1777"
 ]
}

 The dataset includes 22831 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069133-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13120/29772ebe-35f8-4b62-9ff0-b04539d32297
title: Contaminants: Monitored Matrices Per Year, v2024
title: Contaminants: Monitored Matrices Per Year, v2024

description: This product displays positions symbolized per matrix, for all available contaminants measurements for each year present in EMODnet regional contaminants aggregated datasets, v2024. The product displays positions for every available year.
DOI: 10.15468/dl.68nds9
title: Occurrence Download

description: A dataset containing 1047 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cycas media R.Br."
 ]
}

 The dataset includes 1047 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069139-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ae6mm2
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scopoliella Scheller, 1986"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069137-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ty8cfc
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galanthus plicatus subsp. plicatus"
 ]
}

 The dataset includes 90 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069141-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kknrr
title: Occurrence Download

description: A dataset containing 444 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Machine Observation",
 "MediaType is Image",
 "TaxonKey is Amanita muscaria (L.) Lam."
 ]
}

 The dataset includes 444 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069138-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/03e9e2af-904e-4949-ac10-c5721fd6e0f1.v1
title: Data underlying publication: Spinach Seed Microbiome Characteristics Linked to Suppressiveness Against Pythium ultimum Damping-Off

description: Using a bioassay setup, we recently demonstrated that eliminating the seed microbiota of certain spinach (<em>Spinacia oleracea</em>) seed lots makes them more susceptible to damping-off caused by <em>Pythium ultimum</em>. This indicates that the presence of an intact seed microbiome can confer disease suppression against this pathogen which attacks seedlings during germination. This study aimed at identifying the key actors associated with seed microbiome suppressiveness by correlating the bioassay results with the taxonomy and relative abundance of bacteria and fungi present in eight spinach seed lots differing in suppressive potential. Seed lots shared core taxa, but 81 % of all taxa were rare and a large proportion of variance between samples was explained by seed lot identity. Additionally, 7.1 % of bacterial and 6.2 % of fungal community variance between samples correlated with the trait of disease suppression. High fungal diversity was a characteristic of highly suppressive seed lots. More specifically, a higher relative abundance of basidiomycetous dimorphic yeasts such as <em>Vishniacozyma</em>, <em>Papiliotrema</em> and <em>Filobasidium</em> was a key feature of suppressive seed microbiomes. The same was true for the bacterial genera <em>Massilia</em> and <em>Paenibacillus</em> which are known for their antagonistic properties. Consequently, we suggest for the abundance of these genera to be used as an indicator of seed lot suppressive potential. As a result, seed processing and treatment can become more targeted with indicator taxa being used to evaluate the presence of beneficial seed-associated microbial functions. This process in turn would contribute to the sustainable management of seedling diseases. Finally, this study highlights the ubiquity of yeasts in spinach seed microbiota and their potential beneficial roles for seed health.
DOI: 10.4121/03e9e2af-904e-4949-ac10-c5721fd6e0f1.v2
title: Data underlying publication: Spinach Seed Microbiome Characteristics Linked to Suppressiveness Against Pythium ultimum Damping-Off

description: Using a bioassay setup, we recently demonstrated that eliminating the seed microbiota of certain spinach (<em>Spinacia oleracea</em>) seed lots makes them more susceptible to damping-off caused by <em>Pythium ultimum</em>. This indicates that the presence of an intact seed microbiome can confer disease suppression against this pathogen which attacks seedlings during germination. This study aimed at identifying the key actors associated with seed microbiome suppressiveness by correlating the bioassay results with the taxonomy and relative abundance of bacteria and fungi present in eight spinach seed lots differing in suppressive potential. Seed lots shared core taxa, but 81 % of all taxa were rare and a large proportion of variance between samples was explained by seed lot identity. Additionally, 7.1 % of bacterial and 6.2 % of fungal community variance between samples correlated with the trait of disease suppression. High fungal diversity was a characteristic of highly suppressive seed lots. More specifically, a higher relative abundance of basidiomycetous dimorphic yeasts such as <em>Vishniacozyma</em>, <em>Papiliotrema</em> and <em>Filobasidium</em> was a key feature of suppressive seed microbiomes. The same was true for the bacterial genera <em>Massilia</em> and <em>Paenibacillus</em> which are known for their antagonistic properties. Consequently, we suggest for the abundance of these genera to be used as an indicator of seed lot suppressive potential. As a result, seed processing and treatment can become more targeted with indicator taxa being used to evaluate the presence of beneficial seed-associated microbial functions. This process in turn would contribute to the sustainable management of seedling diseases. Finally, this study highlights the ubiquity of yeasts in spinach seed microbiota and their potential beneficial roles for seed health.