cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.m097580/4
title: Lymbery et al 2018 R Script

description: Contains all the R code used for statistical analysis in this manuscript, with annotations to aid interpretation.
DOI: 10.5061/dryad.pm8p741/1
title: 3_way 4_way food webs

description: Describes characteristics of animals and encounter and predation outcomes in 3-way and 4-way food webs
DOI: 10.5061/dryad.pm8p741/2
title: Lipid and protein analysis data

description: Raw data on the analysis of protein and lipid contents of arthropods in this food web
DOI: 10.5061/dryad.pm8p741/3
title: Prey of wolf spiders in cotton fields

description: Field observations of spider predation in cotton fields
DOI: 10.5061/dryad.q7r61k7/1
title: Alloteropsis leaf anatomy dataset

description: Excel file containing datasets presented in the paper. Column headings provide units. Methods section in the paper provides collection / analysis methods.
DOI: 10.5061/dryad.r2dm56s/10
title: Forrest_HOBO_data_May2013-Dec2016

description: Temperature data from field sites. Please see README file for details.
DOI: 10.5061/dryad.r2dm56s/3
title: Osmia_iridis_2015_summer_incubator_expt

description: Data used to generate Fig. 3A-B. Please see README file for details.
DOI: 10.5061/dryad.r2dm56s/6
title: NOAA_CB_data

description: Processed data from NOAA's Crested Butte weather station. Please see README file for details.
DOI: 10.5061/dryad.r2dm56s/7
title: NOAA_CB_DD12_1950-2015

description: Please see README file.
DOI: 10.5061/dryad.r2dm56s/8
title: NOAA_CB_DD12_1950-2015_by_day

description: Data used to generate Fig. 5. Please see README file for details.
DOI: 10.5061/dryad.r2dm56s/9
title: Osmia_iridis_parsivoltinism_stats

description: Data used to generate Fig. 6. Please see README file for details.
DOI: 10.5061/dryad.v3539d2.2/2.2
title: Supplementary movie 2

description: Probing behaviour while feeding on leaves with webworms (right bowl). By repeatedly touching the leaves with its muzzle (probing), the kid was able to pick webworm-free leaves. Video speed increased by ×5.
DOI: 10.5061/dryad.v3539d2.2/5.2
title: Non-choice experiment-no webworms (kid #2609)

description: An example of a non-choice experiment- we presented a kid with one bowl at a time (control or webworm leaves) in randomized order. This bowl contains leaves without webworms.
DOI: 10.5061/dryad.v3539d2.2/7.2
title: Dual-choice experiment- Trial 2 (kid #2639)

description: We presented naive kids with a choice between two bowls (in randomized order) containing leaves alone and leaves with three webworms. We repeated this experiment over three consecutive days, in order to examine whether the kids learn to avoid webworms and feed more efficiently with experience. This video shows trial number 2.
DOI: 10.5061/dryad.vs6md76/1
title: Brossette et al - Parental care - dataset - 26-11-18 - DOI10.1002-ece3.4710

description: Dataset of Brossette et al - DOI: 10.1002/ece3.4710
DOI: 10.17632/9vg34wt4m8.1
title: Data for: Surface Modification of Carbon Steel by ZnO-Graphene Nano-hybrid Thin Film

description: Nova raw file and separated diagrams for further study.
DOI: 10.17632/vtfgkhvdzg.3
title: Data for: THE EFFECT OF DIETARY CAROTENOID INCREASE ON PAINTED TURTLE SPOT AND STRIPE COLOR

description: This data contains spectral files for 58 males Painted Turtles before and after moderate and large amounts of xanthophyll provision in their diets. The workbook contains 6 worksheets, which contain spectral data from the following regions: CLRc = spectral data from the chin, CLRcp = spectral data from the carapace, CLRpo = spectral data from the post-orbital spot, CLRn = spectral data from the neck stripe, CLRf = spectral data from the fore-limb stripe and CLRh = spectral data from the hind-limb stripe.
DOI: 10.5061/dryad.11j304c/1
title: Data for paper

description: readme.txt files within ZIP archive
DOI: 10.5061/dryad.1pc19/1
title: data

description: zip files of the data used in the article except for Tree demographical data available at www.forestplot.com/.
DOI: 10.5061/dryad.205823j/2
title: Habitat amount

description: Habitat amount data for the 84 sampling sites.
ID:      sampling point identification
Buffer:  20, 40, 80, 160 or 320m radius
A_for:   forest area within the buffer (m2)
A_scr:   scrub area within the buffer (m2)
A_mea:   meadow area within the buffer (m2)
Habitat: habitat type: FOR (forest), SCR (scrub) or MEA (meadow)
S_t:     number of macro-moth species
S_for:   number of forest macro-moth species
S_nfor:  number of non-forest macro-moth species
DOI: 10.5061/dryad.205823j/3
title: SAR models

description: SAR models data

Area:   total area (m2)
A_for:  forest area (m2)
A_nfor: non-forest area (m2)
S_for:  number of forest macro-moth species
S_nfor: number of non-forest macro-moth species
S_t:    number of macro-moth species
DOI: 10.5061/dryad.2h0k50s/1
title: R Code for Analysis of Covariance to Calculate the Ornamentation Index

description: Included in this file is the R code needed to conduct an analysis of covariance to calculate the ornamentation index for 37 measured species of Poecilia. The # annotations indicate steps that were done in every analysis for each species. The final calculated values of the ornamentation index are highlighted in yellow. Dorsal fin length refers to the measurement of dorsal fin height (height of the longest fin ray) used to calculate the ornamentation index, whereas dorsal fin width refers to the length of the dorsal fin at its base.
DOI: 10.5061/dryad.2h0k50s/2
title: Measurements of Specimens of Limia caymanensis
DOI: 10.5061/dryad.2h0k50s/3
title: Measurements of Specimens of Limia dominicensis
DOI: 10.5061/dryad.2h0k50s/4
title: Measurements of Specimens of Limia grossidens
DOI: 10.5061/dryad.2h0k50s/5
title: Measurements of Specimens of Limia melanogaster
DOI: 10.5061/dryad.2k16k4b/1
title: data_nitrate_ammonium
DOI: 10.5061/dryad.3k8c480/1
title: Margaroni et al. Journal of Biogeography Online Data

description: This single CSV file contains the data used in the analysis of S. Margaroni et al., The role of spore size in the global pattern of co-occurrence among Selaginella species, Journal of Biogeography. Data available for 113 species of Selaginella are: species name, average megaspore volume in cubic micrometers, average microspore volume in cubic micrometers, area in square kilometers of geographic range (estimated as minimum convex polygon containing GBIF occurrence points), latitude of centroid of the species range polygon in degrees (absolute value, i.e., ignoring N or S latitude), and the number of other species ranges that overlap with a given species. Data available for 923 instances of pairwise range overlap between species are: names of the two species involved, area of overlap between range polygons in square kilometers, megaspore volume ratio, and microspore volume ratio (ratio of larger spore volume to smaller spore volume of the two species in the pair).
DOI: 10.5061/dryad.3rj81.1
title: Data from: Different phylogenetic and environmental controls of first-order root morphological and nutrient traits: evidence of multidimensional root traits
DOI: 10.5061/dryad.3rj81.1/1.1
title: Data of first-order root trait in eastern China

description: The data file contains six first-order root traits, including root diameter (RD), specific root length (SRL), root tissue density (RTD), root carbon and nitrogen concentration (RC and RN) and C:N ratio, of 181 plant species from eight subtropical and boreal forests in eastern China.
DOI: 10.5061/dryad.3rj81.2/1.2
title: Data of first-order root trait in eastern China

description: The data file contains six first-order root traits, including root diameter (RD), specific root length (SRL), root tissue density (RTD), root carbon and nitrogen concentration (RC and RN) and C:N ratio, of 181 plant species from eight subtropical and boreal forests in eastern China.
DOI: 10.5061/dryad.3s57p.3
title: Data from: Land use in mountain grasslands alters drought response and recovery of carbon allocation and plant-microbial interactions
DOI: 10.5061/dryad.3s57p.3/1.3
title: Land use and drought effects on grassland C dynamics

description: Data were collected from a common garden drought experiment in the Austrian Central Alps using intact vegetation-soil monoliths from an extensively managed meadow and a nearby abandoned grassland. The monoliths were installed in summer 2013 on the meadow site and pre-incubated until drought simulation was started in early summer 2014. The effects of land use on the response of plant C allocation and plant-microbial C transfer to drought and rewetting were studied by conducting two 13C pulse-chase labelling campaigns. A description of all data and abbreviations used in the excel file can be found in tab "0-README".
DOI: 10.5061/dryad.40cd5ps/1
title: Raw data of all figures
DOI: 10.5061/dryad.4521vq2/2
title: Natural_disturbances_species

description: Vegetation composition data from natural disturbances caused by wild boar and undisturbed control plots. Cover of all vascular plants on percentage scale. Plot size is 0.5 × 0.5 m. Columns: Date = date of the data collecting; Age = age of disturbance in years; Year_of_origin = when the disturbance was rooted
DOI: 10.5061/dryad.4521vq2/3
title: Rooted_area

description: Data from repeated field mapping of natural soil disturbances caused by wild boar.
Sheet “Rooting_rerooting_history”: Columns: Rooted area (m2) = area of fragment of disturbance with certain history; Enclave = spatial parameter; Rooting history = history of certain disturbance fragment given by rooting and re-rootings. 
Sheet “Size (m2)”: Areas (in m2) of all disturbances mapped in certain years.
DOI: 10.5061/dryad.4b2158p/1
title: Siglec-Fc Binding Assays - Data of Figure 2, 3B, S6B

description: Raw data and statistical analysis of Siglec-Fc binding assays with Neisseria gonorrhoeae strains.
DOI: 10.5061/dryad.4b2158p/2
title: Flow cytometry assay with Siglec-Fcs and LOS mutants - Fig.3C-G

description: Raw data and statistical analysis of Flow cytometry data with Siglec-Fcs and different LOS mutants of Neisseria gonorrhoeae.
DOI: 10.5061/dryad.4b2158p/3
title: Siglec-Fc Binding Assays with gonococcal porins - Fig.4

description: Raw data and statistical analysis of binding assay with Siglec-Fcs and gonococcal porins.
DOI: 10.5061/dryad.4b2158p/4
title: IL-6 secretion assay - Fig.5A

description: Raw data and statistical analysis of IL-6 secretion ELISA assay of Neisseria gonorrhoeae challenged THP-1 cells expressing Siglec-5 or Siglec-14.
DOI: 10.5061/dryad.4b2158p/5
title: Phagocytosis assay - Fig.5B

description: Raw data of phagocytosis assay with THP-1 cells expressing Siglec-14 challenged with gonococcal porins.
DOI: 10.5061/dryad.50t6sq6/10
title: Purple urchin mortality data for use with LOESS script

description: Data from field experiment, use to visualize mortality patterns of purple urchins with LOESS models
DOI: 10.5061/dryad.50t6sq6/2
title: Spiny lobster functional response to purple urchins

description: California spiny lobsters consuming purple urchins in functional response experiments conducted in at San Diego State Coastal & Marine Institute Lab.
DOI: 10.5061/dryad.50t6sq6/3
title: Spiny lobster functional response to purple + red urchins

description: Cal. spiny lobsters consuming purple and red urchins simultaneously, experiments conducted at SDSU Coastal & Marine Institute Lab
DOI: 10.5061/dryad.50t6sq6/4
title: Size-dependent mortality of urchins due to spiny lobster predation

description: California spiny lobsters consuming purple urchins and purple + red urchins in functional response experiments. Size-dependent mortality analysis script.
DOI: 10.5061/dryad.50t6sq6/5
title: Purple urchin size-dependent survival

description: Purple urchin survival data following spiny lobster functional response experiments. Used to test size-dependent mortality.
DOI: 10.5061/dryad.50t6sq6/6
title: Purple + red urchin size-dependent survival

description: Purple urchin survival data following spiny lobster functional response experiments. Used to test size-dependent mortality.
DOI: 10.5061/dryad.50t6sq6/7
title: Field experiment GLMM analyses of urchin mortality

description: GLMM analyses (binomial distribution) to test for density-dependent mortality of purple and purple + red sea urchins due to predation. Experiments conducted in Pt Loma and S. La Jolla kelp forests in 2014 and 2017.
DOI: 10.5061/dryad.50t6sq6/8
title: GLMM Binomial Analysis Data for Field Experiment

description: Data from field experiment testing for density-dependent mortality of urchins using a GLMM (Binomial distribution)
DOI: 10.5061/dryad.50t6sq6/9
title: Field experiment, analysis to visualize urchin mortality with LOESS

description: Script to use loess models to visualize urchin mortality patterns in field experiment, conducted in Pt Loma and S La Jolla kelp forests in 2014 and 2017
DOI: 10.5061/dryad.5tb3312/1
title: Brown pelican (Pelecanus occidentalis) GPS telemetry data, 2014-2017

description: Raw GPS telemetry data collected from 30 adult brown pelicans nesting on Raccoon Island in the northern Gulf of Mexico. All dates and times are in GMT/UTC, and are presented in 24-hour format. Birds are identified by their GPS tag numbers, which do not carry any quantitative significance. Further information on these individuals can be found in Supplementary Tables 1 and 2 of the article.
DOI: 10.5061/dryad.7238hd3/1
title: NPP, Land Use and Meteorological Data

description: NPP, land use, land use intensity, and meteorological data of the Middle-Reaches of the Heihe River Basin in 2000 and 2014.
DOI: 10.5061/dryad.77m6100/1
title: Mayhew et al._Panama Bird Data_20190105

description: Panama bird community dataset
DOI: 10.5061/dryad.8004512/1
title: Data matrix for ingroup analysis

description: Data matrix for ingroup analysis, representing concatenated nuclear ribosomal and mitochondrial genes and comprising 60 taxa and 18543 positions
DOI: 10.5061/dryad.8004512/2
title: Partitioning scheme for ingroup analysis

description: Partitioning scheme optimized by PartitionFinder 2.1.1
DOI: 10.5061/dryad.8004512/3
title: Data matrix for outgroup analysis

description: Data matrix for outgroup analysis, representing concatenated nuclear ribosomal and 2 mitochondrial genes and comprising 198 taxa and 6051 positions
DOI: 10.5061/dryad.8004512/4
title: Partitioning scheme for outgroup analysis

description: Partitioning scheme for outgroup analysis
DOI: 10.5061/dryad.90103c0/1
title: ABA_data

description: This file contains data associated with a study of active buoyancy adjustment (ABA) in holothuroid echinoderms
DOI: 10.5061/dryad.c481201/1
title: carnicer_dryad
DOI: 10.5061/dryad.c65b4j5/1
title: Supporting Information

description: The file is the Supporting Information for a paper to be published in Palaeontology. The title of the paper is "Tooth microwear and occlusal modes of euharamiyidans from the Jurassic Yanliao
Biota reveal mosaic tooth evolution in Mesozoic allotherian mammals". The file is in pdf format and contains figures and text.
DOI: 10.5061/dryad.cj05t65/1
title: AFSmicrobiome_SI_OTUprocessingPipelineScripts_DatasetS1

description: Collection of scripts for the OTU processing pipeline
DOI: 10.5061/dryad.d5f6h00/2
title: Astroblepus and Chaetostoma collection records

description: Search parameters used in FishNet2 to obtain geographic distribution data which were used in analyzing elevational range and for parameterizing TER models. We present these search parameters rather than the full datasets due to data sharing restrictions in the FishNet2 user agreement.
DOI: 10.5061/dryad.d5f6h00/3
title: Astroblepus and Chaetostoma body stoichiometry data

description: Body stoichiometry data collected for Astroblepus and Chaetostoma in this study, including locality information and corresponding museum catalog numbers for voucher specimens when applicable.
DOI: 10.5061/dryad.h015320/5
title: Supplementary_Material

description: This file contains supplementary tables and figures:
Table S1: Sequencing Summary. 
Table S2: Pair Analysis Table.
Table S3: Individual Analysis Table.
Table S4: All Model Selection Table.
Table S5: Pedigree Adjustments.
Table S6: Pair Copulation Final Model.
Table S7: Male Copulation Final Model.
Table S8: Female Copulation Final Model.
Table S9: Pair Parturition Final Model.
Table S10: Male Parturition Final Model.
Table S11: Female Parturition Final Model.
Table S12: Percent variation explained by the final models.
Table S13: Permutation tests results.
Table S14: Post-hoc Power analysis of Hybrid MHC functional diversity.
Figure S1: Pair categorical analysis four different measures of MHC diversity.
Figure S2: Individual categorical analysis four different measures of internal MHC diversity.
Figure S3: Individual categorical analysis four different measures of pairwise MHC diversity.
Figure S4: MHC diversity method simulated effects of merging loci using even frequencies.
DOI: 10.5061/dryad.h015320/6
title: Koala_Pairings

description: This worksheet contains the koala pairings at the San Diego Zoo (SDZ) from 1984 to 2010.  Each male and female are identified by their name, ZIMS #, and SDZ stud book number.  The breeding success indicates the outcome of the pairing: 1 = offspring lives &gt; 1 year; 2 = offspring lives &lt; 1 year; 3 = copulation but no joey; 4 = no copulation.
DOI: 10.5061/dryad.h015320/7
title: Un-abridged Methods

description: This document contains the more detailed molecular and bioinformatic methods for those who are interested.  There is some overlap with what is covered in the printed text.
DOI: 10.5061/dryad.jf653s3/1
title: DataFiles
DOI: 10.5061/dryad.jf653s3/2
title: DataFiles
DOI: 10.5061/dryad.jm5251f/12
title: No_template_control

description: Shotgun data: all merged NextSeq reads for the no-template control, unfiltered. Unmerged reads are available upon request from the corresponding author.
DOI: 10.5061/dryad.m559kb0/1
title: Field sampling information and measured innate immune indices of Common Bulbuls in Nigeria

description: Data was collected at the Amurum Forest Reserve (09°52’N, 08°58’E) which is located at the A.P. Leventis Ornithological Research Institute (APLORI) in Nigeria. Data was collected between January 2014 and February 2016. Birds were caught using mist nets. Data contains individual information of Common Bulbuls Pycnonotus barbatus sampled for blood to quantify indices of innate immunity, including haptoglobin, nitric oxide (NOx) and ovotransferrin concentrations, and haemagglutination and haemolysis.
Worksheet 1 contains field information for sampled birds, including, ring number, date, age, pectoral muscle score, fat score, brood patch, head moult, body moult, wing length, body mass, tarsus length, bill length, capture time, moult category, scores of individual primary feathers, cumulative scores of primary feathers, colour ring combination and presence or absence of a brood patch. Worksheet 2 contains measures of haemagglutination and haemolysis titres with ring numbers and capture dates corresponding to data in worksheet 1. Worksheet 3 contains measures of haptoglobin concentration with ring numbers and capture dates corresponding to data in worksheet 1. Worksheet 4 contains measures of nitric oxide concentration with ring numbers and capture dates corresponding to data in worksheet 1. Worksheet 5 contains measures of ovotransferrin concentration with ring numbers and capture dates corresponding to data in worksheet 1. Worksheet 6 contains assay plate details for nitric oxide concentration assay corresponding to data in worksheet 4 - this additional data may be required to calculate intra and inter-assay variability.  All data include notes inserted as comments describing the data columns.
DOI: 10.5061/dryad.m6v2305/1
title: Supplementary-2018-10-23

description: Supplementary File
DOI: 10.5061/dryad.p05t5d0/2
title: Rabelo_mammals-in-islands_data

description: These data are a product of Rafael Rabelo’s Master thesis, conducted at the Ecology Graduate Program of Brazil´s National Institute for Amazon Research (INPA), with logistical and financial support from Mamirauá Institute for Sustainable Development (IDSM-OS/MCTIC). The aim of the research was to evaluate the pattern of mammal distribution in fluvial islands and to understand the factors that drive species distribution.
DOI: 10.5061/dryad.q3b7b78/1
title: MagpieAnalysisOCT2018

description: Code for Magpie Paper analysis
DOI: 10.5061/dryad.q3b7b78/2
title: averagePatternDF

description: Pattern Dataframe
DOI: 10.5061/dryad.q3b7b78/3
title: averageDF

description: Background colour Dataframe
DOI: 10.5061/dryad.q3b7b78/4
title: AVERAGEDF2018final.nooutsiders

description: Dataframe without points outside specified area
DOI: 10.5061/dryad.qb7r0d3/1
title: Sequencing data to analyse the targeting efficiencies of different sgRNA:target pairs

description: The zip file contains: 1) a README spreadsheet in standard GEO format, with further informations about the data. 2) RAW DATA folder, containing the raw FASTQ output of the sequencing run, as well as a run report in PDF. 1) Six folders containing demultiplexed read for each experimental condition (indicated by the folder name). Each folder contains 11 files, corresponding to the 11 amplicons sequenced per condition.
DOI: 10.5061/dryad.r4v94tc/1
title: Poa_CF_OCHLOPOA

description: Alignment file of the chloroplast sequences (includes trnL gene intron and trnL-trnF intergenic spacer)
DOI: 10.5061/dryad.rg57q6m/1
title: Data from: Patterned Frequency-Modulated Oral Stimulation in Preterm Infants:A Multicenter Randomized Controlled Trial
DOI: 10.5061/dryad.s4rr2vf/1
title: Mosaic Archive

description: All completed mosaics of Florida sites, including 1 from Cheetos reef and 4 from Sunny Isles. Collected June 2014.
DOI: 10.5061/dryad.t8s6t02/1
title: data_whole_canopy_averages

description: Whole canopy data of moss structural characteristics
DOI: 10.5061/dryad.t8s6t02/2
title: data_species_averages

description: Species averages of moss canopy structural traits
DOI: 10.5061/dryad.v9637h8/1
title: Exploration data

description: Raw data used to calculate exploration scores of individuals.
DOI: 10.5061/dryad.v9637h8/2
title: Individual data

description: Sex and phenotypic data of individuals recorded during social foraging.
DOI: 10.5061/dryad.v9637h8/3
title: Social foraging data

description: Social foraging data of individuals.
DOI: 10.5061/dryad.vv22bs1/1
title: Matlab Code of Figures 1, 3--7

description: This file is about the matlab code of Figures 1, 3--7 used in the paper.
DOI: 10.17632/sm73bskrdj.1
title: Data for: Energetics of melting of Yb2O3 and Lu2O3 from Drop and Catch Calorimetry and First Principles Computations

description: Supplementary information for manuscript "Energetics of melting of Yb2O3 and Lu2O3 from Drop and Catch Calorimetry and First Principles Computations" by Matthew Fyhrie, Qi-Jun Hong, Denys Kapush, Sergey V. Ushakov, Helena Liu, Axel van de Walle, Alexandra Navrotsky
DOI: 10.17632/xj3ksr2ckv.1
title: Data for: Benthic foraminiferal paleoecology of the Maastrichtian succession at the Kharga Oasis, Western Desert, Egypt
DOI: 10.5061/dryad.0jm1dt2/1
title: README_Waraniak_18S_Metabarcoding

description: README file describing the contents of the other data files and R script in this Dryad package.
DOI: 10.5061/dryad.0jm1dt2/2
title: Waraniak_18S_Analyses

description: R code used to perform most of the analyses and produce Figures 4, 5, and 6 in the associated manuscript.
DOI: 10.5061/dryad.0jm1dt2/3
title: Waraniak_18S_dietseqs_cleaned

description: FASTA file output from mothur with information on the number of reads, nucleotide sequence, and diet samples associated with each of the operational taxonomic units (OTUs) created by the mothur analysis.
DOI: 10.5061/dryad.0jm1dt2/4
title: Waraniak_18S_ESU_Biomass

description: Data file including information on the biomass of prey items for each night of the drift net survey used to estimate prey availability. Necessary input file for some analyses in the R code.