cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13987148
title: DigitAP Species Habitat Survey

description: This dataset contains floristic and vegetation data collected for the DigitAP PNRR Project (https://www.nnb.isprambiente.it/it/digitap/il-pnrr-per-i-parchi-nazionali-e-le-aree-marine-protette-progetto-digitap). It provides information on localities, occurrence, and cover of plant species recorded during the 2024 field campaign. The dataset will be updated throughout the project to include all field data collected, along with the parameters used to assess the impact of pressures and threats on various habitat  in the Italian National Park.

The first version includes field data collected between may and july 2024.

Foundings: PIANO NAZIONALE DI RIPRESA E RESILIENZA (PNRR): MISSIONE 2 Rivoluzione Verde e Transizione Ecologica; COMPONENTE 4 Tutela del Territorio e delle Risorsa Idrica; INVESTIMENTO 3.2 Digitalizzazione dei Parchi e delle Aree Marine Protette; Sub investimento 3.2 A) Conservazione della natura – monitoraggio delle pressioni e minacce su specie e habitat e cambiamento climatico.
DOI: 10.5281/zenodo.14080405
title: DigitAP Species Habitat Survey

description: This dataset contains floristic and vegetation data collected for the DigitAP PNRR Project (https://www.nnb.isprambiente.it/it/digitap/il-pnrr-per-i-parchi-nazionali-e-le-aree-marine-protette-progetto-digitap). It provides information on localities, occurrence, and cover of plant species recorded during the 2024 field campaign. The dataset will be updated throughout the project to include all field data collected, along with the parameters used to assess the impact of pressures and threats on various habitat  in the Italian National Parks.

The first version includes field data collected between May and July 2024.

The second version includes field data collected between May and October 2024. The dataset also includes Ellenberg indicator values according to Tichý et al (2023)  https://doi.org/10.1111/jvs.13168 (availble at: .https://files.ibot.cas.cz/cevs/downloads/floraveg/Indicator_values_Tichy_et_al%202022-11-29.xlsx, accessed 2024/07/01)

Fundings: PIANO NAZIONALE DI RIPRESA E RESILIENZA (PNRR): MISSIONE 2 Rivoluzione Verde e Transizione Ecologica; COMPONENTE 4 Tutela del Territorio e delle Risorsa Idrica; INVESTIMENTO 3.2 Digitalizzazione dei Parchi e delle Aree Marine Protette; Sub investimento 3.2 A) Conservazione della natura – monitoraggio delle pressioni e minacce su specie e habitat e cambiamento climatico.
DOI: 10.5281/zenodo.14535596
title: DigitAP Species Habitat Survey

description: This dataset contains floristic and vegetation data collected by ISPRA for the DigitAP PNRR Project (https://www.nnb.isprambiente.it/it/digitap/il-pnrr-per-i-parchi-nazionali-e-le-aree-marine-protette-progetto-digitap). It provides information on localities, occurrence, and cover of plant species recorded during the 2024 field campaign. The dataset will be updated throughout the project to include all field data collected, along with the parameters used to assess the impact of pressures and threats on various habitat  in the Italian National Parks.

The first version includes field data collected between May and July 2024.

The second version includes field data collected between May and October 2024. 

The third version includes field data collected between May and December 2024.The dataset also includes Ellenberg indicator values according to Tichý et al (2023)  https://doi.org/10.1111/jvs.13168 (availble at: .https://files.ibot.cas.cz/cevs/downloads/floraveg/Indicator_values_Tichy_et_al%202022-11-29.xlsx, accessed 2024/07/01) and Life form, according to Dřevojan et al. (2023) (available at: https://files.ibot.cas.cz/cevs/downloads/floraveg/Life_form.xlsx, accessed 2024/10/01)

Fundings: PIANO NAZIONALE DI RIPRESA E RESILIENZA (PNRR): MISSIONE 2 Rivoluzione Verde e Transizione Ecologica; COMPONENTE 4 Tutela del Territorio e delle Risorsa Idrica; INVESTIMENTO 3.2 Digitalizzazione dei Parchi e delle Aree Marine Protette; Sub investimento 3.2 A) Conservazione della natura – monitoraggio delle pressioni e minacce su specie e habitat e cambiamento climatico.
DOI: 10.5281/zenodo.14651796
title: DigitAP Species Habitat Survey

description: This dataset contains floristic and vegetation data collected by ISPRA for the DigitAP PNRR Project (https://www.nnb.isprambiente.it/it/digitap/il-pnrr-per-i-parchi-nazionali-e-le-aree-marine-protette-progetto-digitap). It provides information on localities, occurrence, and cover of plant species recorded during the 2024 field campaign. The dataset will be updated throughout the project to include all field data collected, along with the parameters used to assess the impact of pressures and threats on various habitat  in the Italian National Parks.

The first version includes field data collected between May and July 2024.

The second version includes field data collected between May and October 2024. 

The third version includes field data collected between May and December 2024.The dataset also includes Ellenberg indicator values according to Tichý et al (2023)  https://doi.org/10.1111/jvs.13168 (availble at: .https://files.ibot.cas.cz/cevs/downloads/floraveg/Indicator_values_Tichy_et_al%202022-11-29.xlsx, accessed 2024/07/01) and Life form, according to Dřevojan et al. (2023) (available at: https://files.ibot.cas.cz/cevs/downloads/floraveg/Life_form.xlsx, accessed 2024/10/01)

The fourth version includes field data collected between May and December 2024. The dataset also includes Ellenberg indicator values, as described by Tichý et al. (2023) (available at https://doi.org/10.1111/jvs.13168 and https://files.ibot.cas.cz/cevs/downloads/floraveg/Indicator_values_Tichy_et_al%202022-11-29.xlsx, accessed on 2025/01/14), as well as Life form data, according to Dřevojan et al. (2023) (available at https://files.ibot.cas.cz/cevs/downloads/floraveg/Life_form.xlsx, accessed on 2025/01/14).

 

Fundings: PIANO NAZIONALE DI RIPRESA E RESILIENZA (PNRR): MISSIONE 2 Rivoluzione Verde e Transizione Ecologica; COMPONENTE 4 Tutela del Territorio e delle Risorsa Idrica; INVESTIMENTO 3.2 Digitalizzazione dei Parchi e delle Aree Marine Protette; Sub investimento 3.2 A) Conservazione della natura – monitoraggio delle pressioni e minacce su specie e habitat e cambiamento climatico.
DOI: 10.5281/zenodo.14651857
title: DigitAP Species Habitat Survey

description: This dataset contains floristic and vegetation data collected by ISPRA for the DigitAP PNRR Project (https://www.nnb.isprambiente.it/it/digitap/il-pnrr-per-i-parchi-nazionali-e-le-aree-marine-protette-progetto-digitap). It provides information on localities, occurrence, and cover of plant species recorded during the 2024 field campaign. The dataset will be updated throughout the project to include all field data collected, along with the parameters used to assess the impact of pressures and threats on various habitat  in the Italian National Parks.

The first version includes field data collected between May and July 2024.

The second version includes field data collected between May and October 2024. 

The third version includes field data collected between May and December 2024.The dataset also includes Ellenberg indicator values according to Tichý et al (2023)  https://doi.org/10.1111/jvs.13168 (availble at: https://files.ibot.cas.cz/cevs/downloads/floraveg/Indicator_values_Tichy_et_al%202022-11-29.xlsx, accessed 2024/07/01) and Life form, according to Dřevojan et al. (2023) (available at: https://files.ibot.cas.cz/cevs/downloads/floraveg/Life_form.xlsx, accessed 2024/10/01)

The fourth and the fifth version includes field data collected between May and December 2024. The dataset also includes Ellenberg indicator values, as described by Tichý et al. (2023) (available at https://doi.org/10.1111/jvs.13168 and https://files.ibot.cas.cz/cevs/downloads/floraveg/Indicator_values_Tichy_et_al%202022-11-29.xlsx, accessed on 2025/01/14), as well as Life form data, according to Dřevojan et al. (2023) (available at https://files.ibot.cas.cz/cevs/downloads/floraveg/Life_form.xlsx, accessed on 2025/01/14).

The taxonomic, nomenclatural follows the Checklists of the native and alien floras of Italy (Bartolucci et al. 2024 https://doi.org/10.1080/11263504.2024.2320126, Galasso et al. 2024 https://doi.org/10.1080/11263504.2024.2320129), and their updates (for details, see https://dryades.units.it/floritaly/?procedure=cite).

Fundings: PIANO NAZIONALE DI RIPRESA E RESILIENZA (PNRR): MISSIONE 2 Rivoluzione Verde e Transizione Ecologica; COMPONENTE 4 Tutela del Territorio e delle Risorsa Idrica; INVESTIMENTO 3.2 Digitalizzazione dei Parchi e delle Aree Marine Protette; Sub investimento 3.2 A) Conservazione della natura – monitoraggio delle pressioni e minacce su specie e habitat e cambiamento climatico.
DOI: 10.5281/zenodo.15300606
title: Longer scans boost prediction and cut costs in brain-wide association studies (HCP and TCP parcellated timecourses)

description: Longer scans boost prediction and cut costs in brain-wide association studies (ME)

This repository contains the data release for the HCP and TCP data used in the following study.

REFERENCE

Ooi LQR*, Orban C*, Zhang S*, Nichols TE, ..., Yeo BTT. Longer scans boost prediction and cut costs in brain-wide association studies. bioRxiv, 2025.

BACKGROUND

A pervasive dilemma in neuroimaging is whether to prioritize sample size or scan duration given fixed resources. Here, we systematically investigate this trade-off in the context of brain-wide association studies (BWAS) using resting-state functional magnetic resonance imaging (fMRI). 

We show that sample size and scan duration are broadly interchangable below 30 minutes. We explain the influence of sample size and scan duration with a theoretical model. Finally, we investigate how accounting for costs impacts study design.

Our online calculator is available here.

Data release

This repository contains input data and results from our study for the HCP and TCP dataset. The main repository for the codes used in this project can be found here: Ooi2024_ME. 

This repository is contains the following folders:1. HCP subject list : List of HCP participants used in the main analysis using rest fMRI.2. HCP rest parcellated time series: MAT file containing Schaefer 400 parcellation for each HCP study participant used in the analysis.3. TCP subject list : List of TCP participants used in the main analysis using rest fMRI.4. TCP rest parcellated time series: MAT file containing Schaefer 400 parcellation for each TCP study participant used in the analysis.

UPDATES

- Release v0.0.1 (29/4/2025): Initial release of HCP and TCP repositories for Ooi2024_ME project

BUGS and QUESTIONS

Please contact Leon Ooi (leonooiqr@gmail.com), Csaba Orban (csaba.orban@gmail.com), Zhang Shaoshi (0zhangshaoshi0@gmail.com) and Thomas Yeo (yeoyeo02@gmail.com).
DOI: 10.5281/zenodo.15300607
title: Longer scans boost prediction and cut costs in brain-wide association studies (HCP and TCP parcellated timecourses)

description: Longer scans boost prediction and cut costs in brain-wide association studies (ME)

This repository contains the data release for the HCP and TCP data used in the following study.

REFERENCE

Ooi LQR*, Orban C*, Zhang S*, Nichols TE, ..., Yeo BTT. Longer scans boost prediction and cut costs in brain-wide association studies. bioRxiv, 2025.

BACKGROUND

A pervasive dilemma in neuroimaging is whether to prioritize sample size or scan duration given fixed resources. Here, we systematically investigate this trade-off in the context of brain-wide association studies (BWAS) using resting-state functional magnetic resonance imaging (fMRI). 

We show that sample size and scan duration are broadly interchangable below 30 minutes. We explain the influence of sample size and scan duration with a theoretical model. Finally, we investigate how accounting for costs impacts study design.

Our online calculator is available here.

Data release

This repository contains input data and results from our study for the HCP and TCP dataset. The main repository for the codes used in this project can be found here: Ooi2024_ME. 

This repository is contains the following folders:1. HCP subject list : List of HCP participants used in the main analysis using rest fMRI.2. HCP rest parcellated time series: MAT file containing Schaefer 400 parcellation for each HCP study participant used in the analysis.3. TCP subject list : List of TCP participants used in the main analysis using rest fMRI.4. TCP rest parcellated time series: MAT file containing Schaefer 400 parcellation for each TCP study participant used in the analysis.

UPDATES

- Release v0.0.1 (29/4/2025): Initial release of HCP and TCP repositories for Ooi2024_ME project

BUGS and QUESTIONS

Please contact Leon Ooi (leonooiqr@gmail.com), Csaba Orban (csaba.orban@gmail.com), Zhang Shaoshi (0zhangshaoshi0@gmail.com) and Thomas Yeo (yeoyeo02@gmail.com).
DOI: 10.5281/zenodo.15273436
title: Temperature intensifies effects of human activities on continental-scale coastal dissolved oxygen levels

description: The dataset provide all input data, all code and all output data of the paper online prior to review and download for re-running the analysis and reproduce the results.
DOI: 10.6084/m9.figshare.28890575
title: Origin data

description: The release of phosphorus (P) from sediments is a pivotal factor in the eutrophication of floodplain lakes, making it essential to understand the driving factors for effective management. However, the influence patterns of changes in environmental and microbial characteristics caused by seasonal and spatial variations on phosphorus release from sediments remain unclear. This study examines the floodplain system to explore the release risk and causes of sedimentary phosphorus in two seasons through sequential extraction of sediment phosphorus, phosphorus isotherm adsorption experiments, degree of phosphorus saturation (DPS) experiments, qPCR and gene sequence analysis. The results indicated that the zero equilibrium phosphorus concentration (EPC<sub>0</sub>) of sediments was 13.46 folds in dry season and 6.29 folds in wet season higher than water soluble reactive phosphorus (SRP) content, respectively, while the maximum phosphorus adsorption capacity (Q<sub>max</sub>) exhibited little differences between two seasons. On the whole, seasonal and spatial variations indirectly affected the fractions changing and release potential of sediment phosphorus by altering environmental variables and microbial phosphorus-cycling fucntions. Particularly, The properties of water (DO, pH, TP, NH<sub>4</sub><sup>+</sup>) and sediments (TOC, TN) in dry season significantly affected microbial alpha and beta diversity, promoting the phosphorus fraction transformation (such as Ca-P dissolution and release) of sediments, thus affecting the phosphorus release potential (Q­<sub>max</sub>, DPS). The water (T, SRP, TN, TP) and sediment (TOC, DOC, TN) properties of wet season influenced the phosphorus release potential (Q­<sub>max</sub>, EPC<sub>0</sub>) by enhancing microbial organic phosphate mineralization and inorganic phosphate solubilization. Therefore, sediments microbial communities in the floodplain lake responded rapidly to the characteristics of water and sediment. Regulating these indicators can help provide specific schemes for phosphorus management in floodplain ecosystems. Our research elucidated the key driving factors of endogenous phosphorus release in the floodplain lake with seasonal changing, and it provided important insights into future limnal protection efforts influenced by human activities and climate change.
DOI: 10.6084/m9.figshare.28890575.v1
title: Origin data

description: The release of phosphorus (P) from sediments is a pivotal factor in the eutrophication of floodplain lakes, making it essential to understand the driving factors for effective management. However, the influence patterns of changes in environmental and microbial characteristics caused by seasonal and spatial variations on phosphorus release from sediments remain unclear. This study examines the floodplain system to explore the release risk and causes of sedimentary phosphorus in two seasons through sequential extraction of sediment phosphorus, phosphorus isotherm adsorption experiments, degree of phosphorus saturation (DPS) experiments, qPCR and gene sequence analysis. The results indicated that the zero equilibrium phosphorus concentration (EPC<sub>0</sub>) of sediments was 13.46 folds in dry season and 6.29 folds in wet season higher than water soluble reactive phosphorus (SRP) content, respectively, while the maximum phosphorus adsorption capacity (Q<sub>max</sub>) exhibited little differences between two seasons. On the whole, seasonal and spatial variations indirectly affected the fractions changing and release potential of sediment phosphorus by altering environmental variables and microbial phosphorus-cycling fucntions. Particularly, The properties of water (DO, pH, TP, NH<sub>4</sub><sup>+</sup>) and sediments (TOC, TN) in dry season significantly affected microbial alpha and beta diversity, promoting the phosphorus fraction transformation (such as Ca-P dissolution and release) of sediments, thus affecting the phosphorus release potential (Q­<sub>max</sub>, DPS). The water (T, SRP, TN, TP) and sediment (TOC, DOC, TN) properties of wet season influenced the phosphorus release potential (Q­<sub>max</sub>, EPC<sub>0</sub>) by enhancing microbial organic phosphate mineralization and inorganic phosphate solubilization. Therefore, sediments microbial communities in the floodplain lake responded rapidly to the characteristics of water and sediment. Regulating these indicators can help provide specific schemes for phosphorus management in floodplain ecosystems. Our research elucidated the key driving factors of endogenous phosphorus release in the floodplain lake with seasonal changing, and it provided important insights into future limnal protection efforts influenced by human activities and climate change.
DOI: 10.15468/dl.f78ggy
title: Occurrence Download

description: A dataset containing 2518483101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Animalia"
 ]
}

 The dataset includes 2518483101 records from 53655 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004254-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbuavy
title: Occurrence Download

description: A dataset containing 206794230 species occurrences available in GBIF matching the query:
{
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
}

 The dataset includes 206794230 records from 22308 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009276-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/qxm-0zq-kav
title: Hieracium hypochoeroides Gibson

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/v8g-nsp-g64
title: Schizaea elegans (Vahl) Sw.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/zg2-hcl-9x5
title: Loxogramme lanceolata (Sw.) C. Presl

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/8gl-9rm-c0n
title: Moehringia trinervia (L.) Clairv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/lr1-7v2-tgz
title: Arenaria serpyllifolia L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/6m3-vby-bth
title: Loxogramme lanceolata (Sw.) C. Presl

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/s1c-qpf-6ed
title: Arenaria leptoclados (Rchb.) Guss.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/97b-1hs-sfb
title: Heliosperma pusillum subsp. pusillum

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/dvp-fal-r6n
title: Cerastium L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/7fy-3e6-74z
title: Pilosella officinarum Vaill.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/8dq-cxp-vag
title: Arenaria serpyllifolia L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ank-1n8-hxg
title: Cerastium L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/26v-5fe-3as
title: Spergularia media (L.) C. Presl

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/kkk-6z2-5ek
title: Holosteum umbellatum L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/6zp-19g-dbb
title: Moehringia muscosa L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/gtv-b54-61n
title: Arenaria serpyllifolia L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/7pm-rqn-s4t
title: Moehringia muscosa L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/rmm-zzl-9wf
title: Spergularia media (L.) C. Presl

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/nf1-ygl-7et
title: Moehringia muscosa L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/14r-e44-ayk
title: Moehringia muscosa L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/dz3-xpr-szk
title: Campanula teucrioides Boiss.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/d69-4xx-3q5
title: Lindsaea nervosa Mett.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ddw-0eb-2hy
title: Lindsaea nervosa Mett.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/681-9pv-04v
title: Bougainvillea stipitata Griseb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/df4-jqw-56d
title: Bougainvillea stipitata Griseb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/55m-asl-ekv
title: Bougainvillea infesta Griseb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/q2n-f35-awg
title: Bougainvillea campanulata Heimerl

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/9jm-wna-204
title: Bougainvillea malmeana Heimerl

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/rk3-yd1-7n2
title: Bougainvillea stipitata Griseb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/8vt-vew-4t1
title: Pilosella bauhini (Schult.) Arv.-Touv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.