cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8418807
title: Dataset and R Code used in the manuscript 'Plasma and Platelet Lipidome Changes in Fabry Disease'

description: SUMMARY

This repository contains mass-spectrometry (MS) raw data files and R scripts used in the manuscript “Plasma and Platelet Lipidome Changes in Fabry Disease” by Bo Burla, Jeongah Oh, Albina Nowak, Nathalie Piraud, Eduardo Meyer, Ding Mei, Anne K Bendt, Jan-Dirk Studt, Beat M Frey, Federico Torta, Markus R Wenk, and Pierre-Alexandre Krayenbuhl,

DATA STRUCTURE

(1) Mass-spectrometry raw data files in "FabryLipidomics_Burla2024_RawDataMS_V5.zip": This zip file contains folders for each measured lipid panel comprising of LC-MS-MRM (Agilent QQQ MS) raw data. Each raw data subfolder (.d) in these folders corresponds to the raw data of one analysis/sample. The subfolders “QuantResults” contain Agilent MassHunter Quant batch files (*.batch.bin) used for the peak picking and peak integration of the corresponding panel. 

(2) RStudio project in "GITHUB_Burla_2024_FabryLipidomics-1.0.zip" (downloaded from GitHub) containing pre-processed raw data (i.e peak areas and other information from peak integration), experimental metadata, and the R code/pipeline used to postprocess, analyze and visualize the data for the manuscript

VIEWING THE DATA

- Raw data files (.d) can be viewed and analysed using Agilent software (Agilent MassHunter QUAL or MassHunter QUANT)

- Raw data files (.d) can also be converted to the open *.mzML format using msconvert (https://proteowizard.sourceforge.io/tools/msconvert.html) and then viewed in e.g. Skyline (https://skyline.ms) or other open-source tools and R/Python scripts supporting this format.

- The MassHunter QUANT batch file  (*.batch.bin)  containing the peak picking and integration definitions can only be viewed using Agilent MassHunter QUANT (version 10 or higher)

- The pre-processed data (peak areas) and corresponding experimental metadata are within the folder "data" of the RStudio project folder (GITHUB_Burla_2024_FabryLipidomics-1.0.zip)

- The R data analysis scripts can be opened in R/RStudio. For further information please refer to README.html within this RStudio project. 

CONTACT

Bo Johannes Burla, PhD,  Singapore Lipidomics Incubator, National University of Singapore, bo.burla@nus.edu.sg
DOI: 10.15468/dl.ejo1yc
title: Occurrence Download

description: A dataset containing 1674115308 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1674115308 records from 19073 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015106-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yt4zfw
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ukraine",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nyctereutes"
 ]
}

 The dataset includes 689 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002253-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azs3gh
title: Occurrence Download

description: A dataset containing 710 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 710 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002256-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9sbmn
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium jarmolenkoi"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002258-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6e66vs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anethum graveolens",
 "Country is Panama",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002257-250717081556266/datasets/export for details.
DOI: 10.5281/zenodo.16045121
title: Supplementary Data for "Carbon nanotubes as fast-thickening agents in polyalphaolefin greases: partial crystallinity and intertube joints toward multifunctionality"
DOI: 10.5281/zenodo.16045122
title: Supplementary Data for "Carbon nanotubes as fast-thickening agents in polyalphaolefin greases: partial crystallinity and intertube joints toward multifunctionality"
DOI: 10.15468/dl.3yvaf9
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002259-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12501032
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.rzydgz
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erucastrum elgonense"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002260-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29593472
title: Comparison with exact solution in the case K(x,y) = xy.

description: Comparison with exact solution in the case K(x,y) = xy.
DOI: 10.6084/m9.figshare.29593472.v2
title: Comparison with exact solution in the case K(x,y) = xy.

description: Comparison with exact solution in the case K(x,y) = xy.
DOI: 10.6084/m9.figshare.29593472.v1
title: Comparison with exact solution in the case K(x,y) = xy.

description: Comparison with exact solution in the case K(x,y) = xy.
DOI: 10.15468/dl.nenp5r
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Photinia floribunda",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002261-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5p7x7p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Photinia floribunda",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002262-250717081556266/datasets/export for details.
DOI: 10.15468/dl.vjry2k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Photinia floribunda",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002263-250717081556266/datasets/export for details.
DOI: 10.15468/dl.kupbms
title: Occurrence Download

description: A dataset containing 94799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ranunculus tuberosus, Ranunculus auricomus, Ranunculastrum auricomum, Ranunculus auricomus auricomus, Ranunculus auricomus obtusulus, Ranunculus auricomus obtusulus, Ranunculus auricomus auricomus, Ranunculus auricomus typicus, Ranunculus lyngei, Ranunculus obtusulus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 94799 records from 773 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002211-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gjsq2
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eunomia rotundifolia"
 ]
}

 The dataset includes 19 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002265-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvwdan
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliophila pusilla setacea"
 ]
}

 The dataset includes 21 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002266-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4xdhd
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002267-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/m0t-ajc-w8z
title: Crumina satis-pecuniae Moneta Argentini

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.95etgd
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Weberbauera suffruticosa"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002271-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/990a451879638d17eda4526215114390
title: Stream water chemistry data for Green Lake 5 Rock Glacier, 1998 - ongoing.

description: This is a summary of major ion concentrations for stream water
 samples collected at the Green Lake 5 Rock Glacier, near Green Lake
 5 in the Boulder County Watershed Green Lakes Valley.
DOI: 10.15468/dl.hv3xz2
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus",
 "Country is Iraq",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002269-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfqk7y
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anethum graveolens",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 93 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002268-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/5fd3bc0af20d2f7dff80182886779686
title: Stream and lake water chemistry data for Green Lakes Valley, 1998 - ongoing.

description: This is a summary of major ion concentrations for lake water at
 selected depths as well as for the inlets and outlets of Green Lakes
 1, 4, and Lake Albion. On some occasions the same samples were also
 taken from other lakes in the Green Lakes Valley, such as Green
 Lakes 2, 3 and 5.
DOI: 10.15468/dl.wgapfd
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus cuneifolius",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 164 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002273-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4fna8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus cuneifolius",
 "Country is Lesotho",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002272-250717081556266/datasets/export for details.
DOI: 10.6073/pasta/92e6f11e89b730321df0865bec4b7b0b
title: Stream water chemistry data for Saddle Stream site, 1994 - ongoing.

description: This is a summary of major ion concentrations for stream water
 samples collected at the Saddle Stream site, at the outflow of the
 Saddle Stream below Niwot Ridge.
DOI: 10.6073/pasta/4a761ed1f7b24d25c3eb870662213789
title: Stream water chemistry data for Martinelli basin, 1984 - ongoing.

description: This is a summary of major ion concentrations for water samples from
 the outlet stream of the Martinelli Basin. Water usually flows
 seasonally from May to September.
DOI: 10.15468/dl.wpcg3m
title: Occurrence Download

description: A dataset containing 751 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 751 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002275-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/c74745a69fa6dc3fa9fbb6800bd8305b
title: Stream water chemistry data for Green Lake 4, 1982 - ongoing.

description: This is a summary of major ion concentrations for water samples
 collected at Green Lake 4. Under summer conditions (June - October)
 samples were from the outlet stream from the lake; in winter
 (November - May) they were from the lake, beneath ice cover.
DOI: 10.6073/pasta/d2e144b3df13186219511c1da32397a9
title: Stream water chemistry data for Arikaree cirque, 1984 - ongoing.

description: This is a summary of major ion concentrations for stream water
 samples collected from the stream draining the Arikaree Cirque.
 Sampling location varied from the channel at the lip of the cirque,
 where it is first exposed by snowmelt, at the beginning of the
 season to the outlet from the pond at the foot of the glacier
 (usually around early July).
DOI: 10.15468/dl.whfp3d
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isatis pavlii"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002277-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15480131
title: An efficient Variable Neighborhood Search approach for the Facility Location problem with Limited Choice rule
DOI: 10.5281/zenodo.16001228
title: An efficient Variable Neighborhood Search approach for the Facility Location problem with Limited Choice rule
DOI: 10.6073/pasta/39b37d16657733f1d661de4c727568a3
title: Stream water chemistry data for Albion site, 1982 - ongoing.

description: This is a summary of major ion concentrations for stream water
 samples collected at the Albion site, at the lower end of Green
 Lakes Valley at the road crossing (culvert) at the Albion camp.
DOI: 10.15468/dl.vpsbyt
title: Occurrence Download

description: A dataset containing 12248 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Conringia orientalis"
 ]
}

 The dataset includes 12248 records from 491 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002276-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgps7a
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba nana"
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002278-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5zu53
title: Occurrence Download

description: A dataset containing 352 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 352 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002279-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4pvqp
title: Occurrence Download

description: A dataset containing 78966 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Geodetic datum assumed WGS84",
 "OccurrenceStatus is Present",
 "TaxonKey is Cactaceae"
 ]
}

 The dataset includes 78966 records from 410 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002255-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48580/dz73.v82
title: Larval morphology of Yateberosus, a New Caledonian endemic subgenus of Laccobius (Coleoptera: Hydrophilidae), with notes on ‘ Berosus - like’ larvae in Hydrophiloidea
DOI: 10.48580/dz6b.v81
title: New Species of Australian Lestidae (Odonata)
DOI: 10.48580/dz6m.v77
title: Phyllium (Phyllium) letiranti sp. nov. (Phasmida: Phylliidae) a new leaf insect from Peleng Island, Indonesia
DOI: 10.48580/dz6s.v85
title: Two new species of Heleomyzidae (Diptera) from Czech Republic and Crimea
DOI: 10.48580/dz69.v80
title: A new species of Honduran Strongylaspis (Coleoptera: Cerambycidae: Prioninae)
DOI: 10.48580/dz5r.v76
title: Chvalaea yolkamini sp. nov. (Diptera: Hybotidae), the first Mexican species of genus discovered on Instagram
DOI: 10.48580/dz5s.v84
title: New taxonomic and faunistic data on Asian species of the genus Indenicmosoma Ardoin (Coleoptera: Tenebrionidae: Lagriinae), with description of a new species from Thailand
DOI: 10.48580/dz66.v80
title: Mystacodon selenensis, the earliest known toothed mysticete (Cetacea, Mammalia) from the late Eocene of Peru: anatomy, phylogeny, and feeding adaptations
DOI: 10.48580/dz5j.v74
title: Contribution to the knowledge of the genus Cordilura Fallén (Diptera, Scathophagidae) from Japan, with descriptions of three new species
DOI: 10.48580/dz5n.v77
title: New records of leaf-mining Tortricidae (Lepidoptera) in North America, with the description of a new species of Grapholita
DOI: 10.48580/dz5c.v32
title: Two new species of the genus Opopaea (Araneae, Oonopidae) from Myanmar
DOI: 10.48580/dz5d.v69
title: Anomoneura taiwanica sp. nov. (Hemiptera, Psylloidea, Psyllidae), a new jumping plant-louse species from Taiwan associated with Morus australis (Moraceae)
DOI: 10.48580/dz5g.v72
title: A new species of Hornylia Wygodzinsky (Hemiptera, Heteroptera, Reduviidae, Emesinae) from Thailand
DOI: 10.17026/ls/7pqibr
title: Data underlying the publication "Quantifying the impact of pruning on young cocoa trees using a functional-structural plant model"

description: &lt;p&gt;Pruning affects tree functioning by removing biomass and triggering compensatory responses. Functional-structural plant (FSP) models, combining three-dimensional plant architecture with physiological processes, are suitable tools to study pruning effects. We present and evaluate the first FSP model for cocoa trees and we simulate pruning impact on young cocoa tree functioning.&lt;br&gt;
We performed two experiments: a parametrization experiment, assessing branching responses to pruning treatments (heading and thinning); and an evaluation experiment measuring the pruning effects on stem radius, leaf number and crown diameter of cocoa trees.&lt;/p&gt;

&lt;p&gt;We developed a FSP model that simulates tree growth as a result of the interaction between physiological processes, tree architecture and pruning-induced changes in branching patterns. Bud break is simulated stochastically, based on bud position and pruning interventions, and was parameterized with field observations. The evaluation experiment was replicated in silico to evaluate model predictions and quantify the effect of pruning on tree functioning.&lt;/p&gt;

&lt;p&gt;Our model captured the immediate effects of pruning on tree structure and partially simulated the compensatory response in leaf production observed in the experiment. In the simulations, pruning reduced total light interception. The simulated mean light interception per unit leaf area was increased only by the thinning treatment. However, this advantage was quickly lost due to induced branch production.&lt;/p&gt;

&lt;p&gt;Our model is a novel tool to study the short-term impact of pruning, as it explicitly simulates tree architecture and pruning-induced responses. Results highlight the necessity of dynamic simulations to understand the long-term impact of pruning in cocoa, even though long-term evaluation data is still necessary.&lt;/p&gt;

&lt;p&gt;Detailed description of the material and methods to produced the data described here can be found in the Material and Methods sections of Tosto et al 2025. Addition information on experimental and model design can be found in supplementary material Methods S1 Methods S2.&lt;/p&gt;
DOI: 10.48580/dz55.v78
title: A revision of the Chilean Brachyglutini - Part 4. Revision of Achilia Reitter, 1890: A. puncticeps and A. approximans species groups, with description of seven new species (Coleoptera: Staphylinidae: Pselaphinae)
DOI: 10.5281/zenodo.17591650
title: Data: "Entropy Profiling of HC/Na metal Cells with Stepwise Temperature Changes: Influence of the Sodiation Kinetics on the Cell Voltage Response"

description: All data files used for figures in the paper "Entropy Profiling of Hard Carbon/Na metal Cells with Stepwise Temperature Changes: Influence of the Sodiation Kinetics on the Cell Voltage Response".
DOI: 10.5281/zenodo.17591651
title: Data: "Entropy Profiling of HC/Na metal Cells with Stepwise Temperature Changes: Influence of the Sodiation Kinetics on the Cell Voltage Response"

description: All data files used for figures in the paper "Entropy Profiling of Hard Carbon/Na metal Cells with Stepwise Temperature Changes: Influence of the Sodiation Kinetics on the Cell Voltage Response".