cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4798042.v1
title: VEnron2

description: VEnron2 is an industrial-scale and public spreadsheet corpus with version information, including 1,609 evolution groups and 12,254 spreadsheets. (Multiple versions originated from the same spreadsheet are considered as an evolution group.)<br>VEnron2 is a big improvement to VEnron1.1. We extrace much more evolution groups and spreadsheets from the Enron email archive, by using SpreadCluster.VErnon2 is published associated with our MSR 2017 paper in May 2017.<br>Liang Xu, Wensheng Dou, Chushu Gao, Jie Wang, Jun Wei, Hua Zhong, Tao Huang. SpreadCluster: Recovering Versioned Spreadsheets through Similarity-Based Clustering. In <i>Proceedings of the 14th International Conference on Mining Software Repositories</i> (<b><i>MSR 2017</i></b>), May 2017.
DOI: 10.6084/m9.figshare.4798000
title: VFUSE

description: <br>FUSE is a reproducible, internet-scale corpus, and contains 249,376 unique spreadsheets that were extracted from over 26.83 billion pages. We applied SpreadCluster to the FUSE and manually validated 200 groups that were randomly selected from the clustering result. Based on the validated result, we built the VFUSE corpus, containing 188 evolution groups and 1,143 spreadsheets.VFUSE is published associated with our MSR 2017 paper in May 2017. <br>Liang Xu, Wensheng Dou, Chushu Gao, Jie Wang, Jun Wei, Hua Zhong, Tao Huang. SpreadCluster: Recovering Versioned Spreadsheets through Similarity-Based Clustering. In <i>Proceedings of the 14th International Conference on Mining Software Repositories</i> (<b><i>MSR 2017</i></b>), May 2017.<br>
DOI: 10.6084/m9.figshare.4798042.v2
title: VEnron2

description: VEnron2 is an industrial-scale and public spreadsheet corpus with version information, including 1,609 evolution groups and 12,254 spreadsheets. (Multiple versions originated from the same spreadsheet are considered as an evolution group.)<br>VEnron2 is a big improvement to VEnron1.1. We extrace much more evolution groups and spreadsheets from the Enron email archive, by using SpreadCluster.VErnon2 is published associated with our MSR 2017 paper in May 2017.<br>Liang Xu, Wensheng Dou, Chushu Gao, Jie Wang, Jun Wei, Hua Zhong, Tao Huang. SpreadCluster: Recovering Versioned Spreadsheets through Similarity-Based Clustering. In <i>Proceedings of the 14th International Conference on Mining Software Repositories</i> (<b><i>MSR 2017</i></b>), May 2017.
DOI: 10.6084/m9.figshare.4797991
title: VEUSES

description: EUSES is the most frequently used spreadsheet corpus, and contains 4,037 spreadsheets. These spreadsheets were extracted from World Wide Web. We applied SpreadCluster to the EUSES and manually validated all groups. Based on the validated result, we built the VEUSES corpus, containing 177 evolution groups and 363 spreadsheets.VEUSES is published associated with our MSR 2017 paper in May 2017. <br>Liang Xu, Wensheng Dou, Chushu Gao, Jie Wang, Jun Wei, Hua Zhong, Tao Huang. SpreadCluster: Recovering Versioned Spreadsheets through Similarity-Based Clustering. In <i>Proceedings of the 14th International Conference on Mining Software Repositories</i> (<b><i>MSR 2017</i></b>), May 2017.<br>
DOI: 10.6084/m9.figshare.4797961
title: VEnron1.1

description: VEnron1.1 is an industrial-scale and public spreadsheet corpus with version information, including 322 evolution groups and 7,171 spreadsheets. (Multiple versions originated from the same spreadsheet are considered as an evolution group.)VEnron1.1 is an improvement to VEnron1.0. We fix some errors in VEnron1.0, and also design a simply layout structure to store versioned spreadsheets.VErnon1.1 is published associated with our MSR 2017 paper in May 2017.<br>Liang Xu, Wensheng Dou, Chushu Gao, Jie Wang, Jun Wei, Hua Zhong, Tao Huang. SpreadCluster: Recovering Versioned Spreadsheets through Similarity-Based Clustering. In <i>Proceedings of the 14th International Conference on Mining Software Repositories</i> (<b><i>MSR 2017</i></b>), May 2017.<br>
DOI: 10.6084/m9.figshare.4798000.v1
title: VFUSE

description: <br>FUSE is a reproducible, internet-scale corpus, and contains 249,376 unique spreadsheets that were extracted from over 26.83 billion pages. We applied SpreadCluster to the FUSE and manually validated 200 groups that were randomly selected from the clustering result. Based on the validated result, we built the VFUSE corpus, containing 188 evolution groups and 1,143 spreadsheets.VFUSE is published associated with our MSR 2017 paper in May 2017. <br>Liang Xu, Wensheng Dou, Chushu Gao, Jie Wang, Jun Wei, Hua Zhong, Tao Huang. SpreadCluster: Recovering Versioned Spreadsheets through Similarity-Based Clustering. In <i>Proceedings of the 14th International Conference on Mining Software Repositories</i> (<b><i>MSR 2017</i></b>), May 2017.<br>
DOI: 10.6084/m9.figshare.4797943
title: VEnron1.0

description: VEnron1.0 is an industrial-scale and public spreadsheet corpus with version information, including 360 evolution groups and 7,294 spreadsheets. (Multiple versions originated from the same spreadsheet are considered as an evolution group.)VEnron1.0 is published by our ICSE SEIP 2016 paper.<br><b>Wensheng Dou</b>, Liang Xu, Shing-Chi Cheung, Chushu Gao, Jun Wei, Tao Huang. VEnron: A Versioned Spreadsheet Corpus and Related Evolution Analysis. In <i>Proceedings of the 38th International Conference on Software Engineering</i> (<b><i>ICSE SEIP 2016</i></b>), pages 162-171, Austin, TX, USA, May 2016.<br>
DOI: 10.6084/m9.figshare.4798000.v2
title: VFUSE

description: <br>FUSE is a reproducible, internet-scale corpus, and contains 249,376 unique spreadsheets that were extracted from over 26.83 billion pages. We applied SpreadCluster to the FUSE and manually validated 200 groups that were randomly selected from the clustering result. Based on the validated result, we built the VFUSE corpus, containing 188 evolution groups and 1,143 spreadsheets.VFUSE is published associated with our MSR 2017 paper in May 2017. <br>Liang Xu, Wensheng Dou, Chushu Gao, Jie Wang, Jun Wei, Hua Zhong, Tao Huang. SpreadCluster: Recovering Versioned Spreadsheets through Similarity-Based Clustering. In <i>Proceedings of the 14th International Conference on Mining Software Repositories</i> (<b><i>MSR 2017</i></b>), May 2017.<br>
DOI: 10.6084/m9.figshare.4797892
title: The Thermal and Microstructural Effect of Plasticizing HMX-Nitrocellulose Composites

description: Thermal ignition via self-heating (cook-off) of cyclotetramethylene-tetranitramine (HMX)-containing plastic-bonded explosives (PBXs) is driven by the β → δ phase transition in the HMX, which is affected if not dominated by microstructure. Here, the HMX-binder interface and phase transition were studied for several variations of PBX 9404 (HMX with plasticized nitrocellulose [NC] binder). Neutron reflectometry was used to examine the interface under several conditions—pristine, after aging, and after thermal treatment. The initial interfacial structure depended on the plasticizer, but the interface homogenized over time. Thermal and optical analyses showed that all formulated materials had higher transition temperatures than neat HMX. This effect increased with NC content.
DOI: 10.6084/m9.figshare.4797883
title: Does chronomodulated radiotherapy improve pathological response in locally advanced rectal cancer?

description: The predominant mode of radiation-induced cell death for solid tumours is mitotic catastrophe, which is in part dependent on sublethal damage repair being complete at around 6 h. Circadian variation appears to play a role in normal cellular division, and this could influence tumour response of radiation treatment depending on the time of treatment delivery. We tested the hypothesis that radiation treatment later in the day may improve tumour response and nodal downstaging in rectal cancer patients treated neoadjuvantly with radiation therapy. Recruitment was by retrospective review of 267 rectal cancer patients treated neoadjuvantly in the Department of Radiation Oncology at the Canberra Hospital between January 2010 and November 2015. One hundred and fifty-five patients met the inclusion criteria for which demographic, pathological and imaging data were collected, as well as the time of day patients received treatment with each fraction of radiotherapy. Data analysis was performed using the Statistical Package R with nonparametric methods of significance for all tests set at <i>p</i> &lt; 0.05. Of the 45 female and 110 male patients, the median age was 64. Seventy-three percent had cT3 disease and there was a mean tumour distance from the anal verge of 7 cm. Time to surgical resection following radiotherapy ranged from 4 to 162 days with a median of 50 days, with a complete pathological response seen in 21% of patients. Patients exhibiting a favourable pathological response had smaller median pre- and postradiotherapy tumour size and had a greater change in tumour size following treatment (<i>p</i> &lt; 0.01). Patients who received the majority of their radiotherapy fractions after 12:00 pm were more likely to show a complete or moderate pathological response (<i>p</i> = 0.035) and improved nodal downstaging. There were also more favourable responses amongst patients with longer time to surgical resection postradiotherapy (<i>p</i> &lt; 0.004), although no relationship was seen between response and tumour distance from the anal verge. Females were less likely to exhibit several of the above responses. Neoadjuvant radiotherapy for locally advanced rectal cancer performed later in the day coupled with a longer time period to surgical resection may improve pathological tumour response rates and nodal downstaging. A prospective study in chronomodulated radiotherapy in this disease is warranted.
DOI: 10.6084/m9.figshare.4797892.v1
title: The Thermal and Microstructural Effect of Plasticizing HMX-Nitrocellulose Composites

description: Thermal ignition via self-heating (cook-off) of cyclotetramethylene-tetranitramine (HMX)-containing plastic-bonded explosives (PBXs) is driven by the β → δ phase transition in the HMX, which is affected if not dominated by microstructure. Here, the HMX-binder interface and phase transition were studied for several variations of PBX 9404 (HMX with plasticized nitrocellulose [NC] binder). Neutron reflectometry was used to examine the interface under several conditions—pristine, after aging, and after thermal treatment. The initial interfacial structure depended on the plasticizer, but the interface homogenized over time. Thermal and optical analyses showed that all formulated materials had higher transition temperatures than neat HMX. This effect increased with NC content.
DOI: 10.6084/m9.figshare.4797850
title: OCT6 teasing

description: Oct6
DOI: 10.6084/m9.figshare.4797883.v1
title: Does chronomodulated radiotherapy improve pathological response in locally advanced rectal cancer?

description: The predominant mode of radiation-induced cell death for solid tumours is mitotic catastrophe, which is in part dependent on sublethal damage repair being complete at around 6 h. Circadian variation appears to play a role in normal cellular division, and this could influence tumour response of radiation treatment depending on the time of treatment delivery. We tested the hypothesis that radiation treatment later in the day may improve tumour response and nodal downstaging in rectal cancer patients treated neoadjuvantly with radiation therapy. Recruitment was by retrospective review of 267 rectal cancer patients treated neoadjuvantly in the Department of Radiation Oncology at the Canberra Hospital between January 2010 and November 2015. One hundred and fifty-five patients met the inclusion criteria for which demographic, pathological and imaging data were collected, as well as the time of day patients received treatment with each fraction of radiotherapy. Data analysis was performed using the Statistical Package R with nonparametric methods of significance for all tests set at <i>p</i> &lt; 0.05. Of the 45 female and 110 male patients, the median age was 64. Seventy-three percent had cT3 disease and there was a mean tumour distance from the anal verge of 7 cm. Time to surgical resection following radiotherapy ranged from 4 to 162 days with a median of 50 days, with a complete pathological response seen in 21% of patients. Patients exhibiting a favourable pathological response had smaller median pre- and postradiotherapy tumour size and had a greater change in tumour size following treatment (<i>p</i> &lt; 0.01). Patients who received the majority of their radiotherapy fractions after 12:00 pm were more likely to show a complete or moderate pathological response (<i>p</i> = 0.035) and improved nodal downstaging. There were also more favourable responses amongst patients with longer time to surgical resection postradiotherapy (<i>p</i> &lt; 0.004), although no relationship was seen between response and tumour distance from the anal verge. Females were less likely to exhibit several of the above responses. Neoadjuvant radiotherapy for locally advanced rectal cancer performed later in the day coupled with a longer time period to surgical resection may improve pathological tumour response rates and nodal downstaging. A prospective study in chronomodulated radiotherapy in this disease is warranted.
DOI: 10.6084/m9.figshare.4797850.v1
title: OCT6 teasing

description: Oct6
DOI: 10.6084/m9.figshare.4797874
title: OCT6 cryosections

description: Oct6
DOI: 10.6084/m9.figshare.4797790
title: LanB HMM PeerJ

description: Code, models, and annotated gene clusters relating to ""A Profile Hidden Markov Model to investigate the distribution and frequency of LanB-encoding lantibiotic modification genes in the human oral and gut microbiome"
DOI: 10.6084/m9.figshare.4797736
title: Archiv.zip

description: This file consists of the data set used to reach the conclusions drawn in the manuscript "Is the risk of progressive multifocal leukoencephalopathy the real reason for natalizumab discontinuation in patients with multiple sclerosis". The applied methods can be found in the manuscript. The study was approved by the ethics committee of the Hamburg Chamber of Physicians (PV3983 10.4.2012 and PV3955 5.1.2012).
DOI: 10.6084/m9.figshare.4797736.v1
title: Archiv.zip

description: This file consists of the data set used to reach the conclusions drawn in the manuscript "Is the risk of progressive multifocal leukoencephalopathy the real reason for natalizumab discontinuation in patients with multiple sclerosis". The applied methods can be found in the manuscript. The study was approved by the ethics committee of the Hamburg Chamber of Physicians (PV3983 10.4.2012 and PV3955 5.1.2012).
DOI: 10.6084/m9.figshare.4797874.v1
title: OCT6 cryosections

description: Oct6
DOI: 10.6084/m9.figshare.4797709
title: A taxonomic reassessment of the <i>Centaurea busambarensis</i> complex (Compositae, Cardueae), with description of a new species from the Egadi Islands (W Sicily)

description: The results of a statistical biometric study of the <i>Centaurea busambarensis</i> complex, which represents the <i>C. cineraria</i> aggregate in Sicily and its offshore islets, are presented. Seventeen populations, representing all seven previously recognized taxa (four species and three additional subspecies) plus a presumed undescribed one were studied. The statistical analysis (PCA and DA) of 26 morphological characters confirmed these eight taxa as distinct, geographically or ecologically vicarious units of equal weight, not supporting their treatment at different ranks. Consequently, they are recognized here as species, resulting in the description (with illustration) of one of them as new (<i>C. aegusae</i>, endemic to Favignana island, Egadi Archipelago, W Sicily) and in a new combination at species rank (<i>C. seguenzae</i>). A key for identifying the eight species of the complex is provided.
DOI: 10.6084/m9.figshare.4797733
title: Computed List of Emission and Recombination Coefficients for O II Recombination Lines

description: The list presents emission and recombination coefficients of the O II transitions arising from recombination of doubly-ionised oxygen O^{2+} with a free electron. An intermediate coupling treatment that fully accounts for the dependence of the distribution of population among the ground levels of O^{2+} on electron temperature (T_e) and electron number density (N_e) is used. The calculation is extended down to low electron temperatures where dielectronic recombination arising from Rydberg states converging on the O^{2+} ground levels is an important process. The data are given as function of T_e and N_e in three Cases (A, B and C). The data are suitable in particular for the physical conditions found in planetary nebulae and H II regions. An interactive data server in the form of fortran 77 code is also provided as an accessory for mining the data of emission coefficients and obtaining Lagrange interpolated values for any choice of the two variables, T_e and N_e, between the explicitly provided values for any set of wavelengths and for any Case.
DOI: 10.6084/m9.figshare.4797643
title: Relevance of forage fish in the diet of Magellanic penguins breeding in northern Patagonia, Argentina

description: We quantified the trophic niche of Magellanic penguins (<i>Spheniscus magellanicus</i>) breeding and moulting in Golfo San Jorge, Argentina, through conventional stomach content and stable isotope analysis. A total of 112 adults were flushed during the early and late chick stages of 2011 and 2012 at Isla Vernacci Norte, and at least 15 prey taxa were found, including fishes, cephalopods, crustaceans and polychaetes. Overall, Argentine anchovy (<i>Engraulis anchoita</i>) showed the highest contribution in terms of importance by mass (68.1–85.3%, depending on chick stage and year), except for the old chick stage in 2011 when the shortfin squid (<i>Illex argentinus</i>) was the main prey consumed (56.0%). Based on carbon and nitrogen isotopic values from a total of 256 blood samples, corresponding to young and old chicks and to adults of both sexes sampled throughout the incubation, chick and moult stages at the above mentioned colony and years, Bayesian mixing model outputs showed that Argentine anchovy was always the main prey (48–86%). Bayesian mixing model outputs obtained from adults of both sexes and their chicks during the late chick stage of 2013 at Isla Vernacci Norte, Isla Tova and Isla Leones also showed that Argentine anchovy was the main prey consumed. This is the first comprehensive assessment of Magellanic penguin diet composition in northern Patagonia, quantifying the relative contribution of prey in the diet of adults and chicks at different stages of the annual cycle and years, and confirms the relevance of a forage fish such as the Argentine anchovy in its trophic ecology.
DOI: 10.6084/m9.figshare.4797643.v1
title: Relevance of forage fish in the diet of Magellanic penguins breeding in northern Patagonia, Argentina

description: We quantified the trophic niche of Magellanic penguins (<i>Spheniscus magellanicus</i>) breeding and moulting in Golfo San Jorge, Argentina, through conventional stomach content and stable isotope analysis. A total of 112 adults were flushed during the early and late chick stages of 2011 and 2012 at Isla Vernacci Norte, and at least 15 prey taxa were found, including fishes, cephalopods, crustaceans and polychaetes. Overall, Argentine anchovy (<i>Engraulis anchoita</i>) showed the highest contribution in terms of importance by mass (68.1–85.3%, depending on chick stage and year), except for the old chick stage in 2011 when the shortfin squid (<i>Illex argentinus</i>) was the main prey consumed (56.0%). Based on carbon and nitrogen isotopic values from a total of 256 blood samples, corresponding to young and old chicks and to adults of both sexes sampled throughout the incubation, chick and moult stages at the above mentioned colony and years, Bayesian mixing model outputs showed that Argentine anchovy was always the main prey (48–86%). Bayesian mixing model outputs obtained from adults of both sexes and their chicks during the late chick stage of 2013 at Isla Vernacci Norte, Isla Tova and Isla Leones also showed that Argentine anchovy was the main prey consumed. This is the first comprehensive assessment of Magellanic penguin diet composition in northern Patagonia, quantifying the relative contribution of prey in the diet of adults and chicks at different stages of the annual cycle and years, and confirms the relevance of a forage fish such as the Argentine anchovy in its trophic ecology.
DOI: 10.6084/m9.figshare.4797709.v1
title: A taxonomic reassessment of the <i>Centaurea busambarensis</i> complex (Compositae, Cardueae), with description of a new species from the Egadi Islands (W Sicily)

description: The results of a statistical biometric study of the <i>Centaurea busambarensis</i> complex, which represents the <i>C. cineraria</i> aggregate in Sicily and its offshore islets, are presented. Seventeen populations, representing all seven previously recognized taxa (four species and three additional subspecies) plus a presumed undescribed one were studied. The statistical analysis (PCA and DA) of 26 morphological characters confirmed these eight taxa as distinct, geographically or ecologically vicarious units of equal weight, not supporting their treatment at different ranks. Consequently, they are recognized here as species, resulting in the description (with illustration) of one of them as new (<i>C. aegusae</i>, endemic to Favignana island, Egadi Archipelago, W Sicily) and in a new combination at species rank (<i>C. seguenzae</i>). A key for identifying the eight species of the complex is provided.
DOI: 10.6084/m9.figshare.4797550
title: dataset_SREP-16-35548C.xlsx

description: Dataset with raw data from Scientific Reports paper "Predictable phenotypic, but not karyotypic, evolution of populations with contrasting initial history". Includes temporal data from phenotypic traits and chromosomal inversions. <br>Authors: Pedro Simões, Inês Fragata, Sofia G. Seabra, Gonçalo S. Faria, Marta A. Santos, Michael R. Rose, Mauro Santos and Margarida Matos.
DOI: 10.6084/m9.figshare.4797538
title: Pairwise Fst values in seven microsatellite loci.

description: Pairwise Fst values between locations_lineages (below diagonal) and pairwise P values (above diagonal) in seven microsatellite loci.<br>
DOI: 10.6084/m9.figshare.4797550.v1
title: dataset_SREP-16-35548C.xlsx

description: Dataset with raw data from Scientific Reports paper "Predictable phenotypic, but not karyotypic, evolution of populations with contrasting initial history". Includes temporal data from phenotypic traits and chromosomal inversions. <br>Authors: Pedro Simões, Inês Fragata, Sofia G. Seabra, Gonçalo S. Faria, Marta A. Santos, Michael R. Rose, Mauro Santos and Margarida Matos.
DOI: 10.6084/m9.figshare.4797532
title: Relative gene flow rate among five locations of sand lance based on seven microsatellite loci.

description: Values in brackets represent the 95% confidence values.<strong> </strong>
DOI: 10.6084/m9.figshare.4797535
title: The proportion of individuals in two clusters inferred by STRUCTURE analysis based on seven microsatellite loci.

description: The number of sand lance individuals in each location and proportion of individuals in two clusters inferred by STRUCTURE analysis based on seven microsatellite loci.
DOI: 10.6084/m9.figshare.4797526
title: Pairwise FST values in seven microsatellite loci.

description: Pairwise FST values between the five locations (below diagonal) and pairwise P values (above diagonal) in seven microsatellite loci.
DOI: 10.6084/m9.figshare.4797532.v2
title: Relative gene flow rate among five locations of sand lance based on seven microsatellite loci.

description: Values in brackets represent the 95% confidence values.<strong> </strong>
DOI: 10.6084/m9.figshare.4797535.v2
title: The proportion of individuals in two clusters inferred by STRUCTURE analysis based on seven microsatellite loci.

description: The number of sand lance individuals in each location and proportion of individuals in two clusters inferred by STRUCTURE analysis based on seven microsatellite loci.