cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3860449_d5
title: Additional file 4: Table S4. of Comparing the intestinal transcriptome of Meishan and Large White piglets during late fetal development reveals genes involved in glucose and lipid metabolism and immunity as valuable clues of intestinal maturity

description: Complete list of DEPs in the four sub-models. The complete model involved 404 DEPs corresponding to 274 unique DEGs. The additive effect of gestational age and genotype was observed for 2871 DEPs corresponding to 1771 unique DEGs (30.2%). The gestational age effect that led to 4357 DEPs corresponding to 2462 unique annotated genes was the largest portion of DEPs (45.8%) while the effect of the fetal genotype included 1886 DEPs corresponding to 1251 unique DEGs (19.8%). (XLSX 898 kb)
DOI: 10.6084/m9.figshare.c.3860470_d2
title: Additional file 11: of Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array

description: Identity of genes detected in previous association studies using the candidate gene approach with genes detected in this study. (DOCX 18 kb)
DOI: 10.6084/m9.figshare.c.3860470_d3.v1
title: Additional file 1: of Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array

description: Phenotypic values (adjusted means) of 90 cultivars of the QUEST population used for the assembly of case-control groups with high (1) and low (0) tuber starch content (TSC), yield (TY) and starch yield. (TSY) (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3860500_d1
title: Additional file 1: Table S1. of Comparative mitochondrial proteomic, physiological, biochemical and ultrastructural profiling reveal factors underpinning salt tolerance in tetraploid black locust (Robinia pseudoacacia L.)

description: Differentially expressed proteins spots in mitochondria of mesophyll cells of diploid (2×) and tetraploid (4×) R. pseudoacacia using 2D–Gel Analysis under 0, 250 mM and 500 mM NaCl treatment. (XLS 16278 kb)
DOI: 10.6084/m9.figshare.c.3860449_d10
title: Additional file 9: Table S7. of Comparing the intestinal transcriptome of Meishan and Large White piglets during late fetal development reveals genes involved in glucose and lipid metabolism and immunity as valuable clues of intestinal maturity

description: Relationships between phenotypic variables and microarray data: list of genes selected within the first component of the sPLS analysis. Retained all gene-phenotypic variable pairs showed an absolute correlation score &gt; 0.75. Related biological functions of selected genes was analyzed using IPA. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3860509_d1.v1
title: Additional file 1: of Ciliated muconodular papillary tumors of the lung with KRAS/BRAF/AKT1 mutation

description: Antibodies used for immunohistochemistry. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3860515_d1.v1
title: Additional file 1: of Identification of QTLs controlling aroma volatiles using a ‘Fortune’ x ‘Murcott’ (Citrus reticulata) population

description: Frequency of detection of the 148 detected juice volatiles in ‘Fortune’, ‘Murcott’ and the F1 progeny. This file contains a table showing the detection frequency of juice volatiles in ‘Fortune’, ‘Murcott’ and the F1 progeny over four harvests. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3860500_d3.v1
title: Additional file 3: Table S3. of Comparative mitochondrial proteomic, physiological, biochemical and ultrastructural profiling reveal factors underpinning salt tolerance in tetraploid black locust (Robinia pseudoacacia L.)

description: The information of different expressed proteins according to ID using DAVID web-server. (XLS 46Â kb)
DOI: 10.6084/m9.figshare.c.3860506_d2.v1
title: Additional file 2: of unitas: the universal tool for annotation of small RNAs

description: Title of data: Table S1. Description of data: Detailed results for adapter prediction and trimming. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3860509_d1
title: Additional file 1: of Ciliated muconodular papillary tumors of the lung with KRAS/BRAF/AKT1 mutation

description: Antibodies used for immunohistochemistry. (XLSX 10 kb)
DOI: 10.15468/dl.vq32ue
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Queensland Museum provider for OZCAM, Australian National Insect Collection)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anoplognathus multiseriatus Lea, 1919"
 ]
}

 The dataset includes 23 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039304-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3860515_d1
title: Additional file 1: of Identification of QTLs controlling aroma volatiles using a ‘Fortune’ x ‘Murcott’ (Citrus reticulata) population

description: Frequency of detection of the 148 detected juice volatiles in ‘Fortune’, ‘Murcott’ and the F1 progeny. This file contains a table showing the detection frequency of juice volatiles in ‘Fortune’, ‘Murcott’ and the F1 progeny over four harvests. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3860515_d2.v1
title: Additional file 2: of Identification of QTLs controlling aroma volatiles using a ‘Fortune’ x ‘Murcott’ (Citrus reticulata) population

description: Relative content of the 148 detected juice volatiles in ‘Fortune’, ‘Murcott’ and the F1 progeny in H1–12, H2–12 and H2–13. This file contains a table showing the volatiles detected in juice samples from ‘Fortune’, ‘Murcott’ and the F1 progeny over three harvests. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3860500_d3
title: Additional file 3: Table S3. of Comparative mitochondrial proteomic, physiological, biochemical and ultrastructural profiling reveal factors underpinning salt tolerance in tetraploid black locust (Robinia pseudoacacia L.)

description: The information of different expressed proteins according to ID using DAVID web-server. (XLS 46Â kb)
DOI: 10.6084/m9.figshare.c.3860506_d2
title: Additional file 2: of unitas: the universal tool for annotation of small RNAs

description: Title of data: Table S1. Description of data: Detailed results for adapter prediction and trimming. (XLSX 12Â kb)
DOI: 10.15468/dl.5f67bd
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaetodon sedentarius Poey, 1860",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 309 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039305-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3860515_d5
title: Additional file 5: of Identification of QTLs controlling aroma volatiles using a ‘Fortune’ x ‘Murcott’ (Citrus reticulata) population

description: Correlation coefficients between volatile groups and other physical and chemical attributes of ‘Fortune’, ‘Murcott’ and the F1 progeny fruits. This file contains a table showing the correlations between chemical classes of volatiles and fruit characteristics in the ‘Fortune’ x ‘Murcott’ population over four harvests. (XLSX 13 kb)
DOI: 10.17632/j599779dd2.1
title: Mitochodrial anchor protein affects virulence of Candida albicans

description: Candida albicans is a major cause of fungal infections in humans and plays a significant role in fungal-related deaths due to its ability to form filaments and mask its cell wall, which are controlled by multiple signaling pathways. However, the relationship between mitochondria, filamentation, and cell wall masking in C. albicans is not fully understood. Therefore, we first determined that the mitochondrial anchor protein Num11 greatly affects filamentation and cell wall masking in C. albicans, both of which are crucial factors for infection. We then discovered that the loss of Num11 increases the ingestion of macrophages and decreases pathogenic activities in vivo. Interestingly, we found that the anchor protein Num1 can regulate the cAMP-PKA pathway to promote the growth of hyphal forms, influencing the Cdc42-Cek1 MAPK pathway to affect the production and presentation of polysaccharide components in the cell wall. Through these powerful mechanisms, the mitochondrial anchor protein Num11 significantly contributes to the pathogenicity of C. albicans. Our research also highlights the potential of Num1 as a new target for antifungal agents in the face of the ongoing challenge of drug-resistant fungi.
DOI: 10.17632/j599779dd2.2
title: Mitochodrial anchor protein affects virulence of Candida albicans

description: Candida albicans is a major cause of fungal infections in humans and plays a significant role in fungal-related deaths due to its ability to form filaments and mask its cell wall, which are controlled by multiple signaling pathways. However, the relationship between mitochondria, filamentation, and cell wall masking in C. albicans is not fully understood. Therefore, we first determined that the mitochondrial anchor protein Num11 greatly affects filamentation and cell wall masking in C. albicans, both of which are crucial factors for infection. We then discovered that the loss of Num11 increases the ingestion of macrophages and decreases pathogenic activities in vivo. Interestingly, we found that the anchor protein Num1 can regulate the cAMP-PKA pathway to promote the growth of hyphal forms, influencing the Cdc42-Cek1 MAPK pathway to affect the production and presentation of polysaccharide components in the cell wall. Through these powerful mechanisms, the mitochondrial anchor protein Num11 significantly contributes to the pathogenicity of C. albicans. Our research also highlights the potential of Num1 as a new target for antifungal agents in the face of the ongoing challenge of drug-resistant fungi.
DOI: 10.6084/m9.figshare.c.3860506_d5
title: Additional file 5: of unitas: the universal tool for annotation of small RNAs

description: Title of data: Table S4. Description of data: Detailed results of tRNA annotation. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3860470_d7
title: Additional file 5: of Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array

description: Distribution of 3144 annotated genes with differential RADseq SNPs on the physical chromosome maps at a resolution of 0.5 Mbp. Intervals with at least 10 genes per 0.5 Mbp are highlighted yellow. (XLSX 37 kb)
DOI: 10.17632/j599779dd2.3
title: Mitochodrial anchor protein affects virulence of Candida albicans

description: Candida albicans is a major cause of fungal infections in humans and plays a significant role in fungal-related deaths due to its ability to form filaments and mask its cell wall, which are controlled by multiple signaling pathways. However, the relationship between mitochondria, filamentation, and cell wall masking in C. albicans is not fully understood. Therefore, we first determined that the mitochondrial anchor protein Num11 greatly affects filamentation and cell wall masking in C. albicans, both of which are crucial factors for infection. We then discovered that the loss of Num11 increases the ingestion of macrophages and decreases pathogenic activities in vivo. Interestingly, we found that the anchor protein Num1 can regulate the cAMP-PKA pathway to promote the growth of hyphal forms, influencing the Cdc42-Cek1 MAPK pathway to affect the production and presentation of polysaccharide components in the cell wall. Through these powerful mechanisms, the mitochondrial anchor protein Num11 significantly contributes to the pathogenicity of C. albicans. Our research also highlights the potential of Num1 as a new target for antifungal agents in the face of the ongoing challenge of drug-resistant fungi.
DOI: 10.6084/m9.figshare.c.3860506_d6.v1
title: Additional file 6: of unitas: the universal tool for annotation of small RNAs

description: Title of data: Table S5. Description of data: Information on artificial and semi-artificial test datasets for phasiRNA prediction. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3860506_d7.v1
title: Additional file 7: of unitas: the universal tool for annotation of small RNAs

description: Title of data: Table S6. Description of data: Detailed results of phasiRNA prediction. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3860506_d6
title: Additional file 6: of unitas: the universal tool for annotation of small RNAs

description: Title of data: Table S5. Description of data: Information on artificial and semi-artificial test datasets for phasiRNA prediction. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3860515_d6
title: Additional file 6: of Identification of QTLs controlling aroma volatiles using a ‘Fortune’ x ‘Murcott’ (Citrus reticulata) population

description: Correlation coefficients between carotenoid derived volatiles and fruit color parameters in ‘Fortune’, ‘Murcott’ and the F1 progeny. This file contains a table showing the correlations between volatiles derived from carotenoids and colors in the ‘Fortune’ x ‘Murcott’ population over four harvests. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3860515_d6.v1
title: Additional file 6: of Identification of QTLs controlling aroma volatiles using a ‘Fortune’ x ‘Murcott’ (Citrus reticulata) population

description: Correlation coefficients between carotenoid derived volatiles and fruit color parameters in ‘Fortune’, ‘Murcott’ and the F1 progeny. This file contains a table showing the correlations between volatiles derived from carotenoids and colors in the ‘Fortune’ x ‘Murcott’ population over four harvests. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3860506_d7
title: Additional file 7: of unitas: the universal tool for annotation of small RNAs

description: Title of data: Table S6. Description of data: Detailed results of phasiRNA prediction. (XLSX 12Â kb)
DOI: 10.17632/6b49wb7fvd.1
title: twoPhaseInterTrackFoam: An OpenFOAM module for arbitrary Lagrangian/Eulerian interface tracking with surfactants and subgrid-scale modeling

description: We provide an implementation of the unstructured Finite-Volume Arbitrary Lagrangian / Eulerian (ALE) Interface-Tracking method for simulating incompressible, immiscible two-phase flows as an OpenFOAM module. In addition to interface-tracking capabilities that include tracking of two fluid phases, an implementation of a Subgrid-Scale (SGS) modeling framework for increased accuracy when simulating sharp boundary layers is enclosed. The SGS modeling framework simplifies embedding subgrid-scale profiles into the unstructured Finite Volume discretization. Our design of the SGS model library significantly simplifies adding new SGS models and applying SGS modeling to Partial Differential Equations (PDEs) in OpenFOAM.
DOI: 10.6084/m9.figshare.c.3860506_d8.v1
title: Additional file 8: of unitas: the universal tool for annotation of small RNAs

description: Title of data: Table S7. Description of data: Detailed description of the artificial miRNA test dataset. (XLSX 1478Â kb)
DOI: 10.17632/5cpbmrtzbr.1
title: PolyPal: A parallel microscale virtual specimen generator

description: We present an open source program, PolyPal, that can generate a polycrystalline virtual specimen in the micrometer scale for atomistic calculations and visualization. Unlike regular meshes or perfect lattices, atomic positions in polycrystalline materials need to be defined before calculations, and the capability of an atom-generation code is evaluated by the maximum size of the virtual specimen it can generate as well as by the efficiency of the necessary input-output process. Present atom-generation codes are implemented in a serial fashion, and the maximum size of the virtual specimen is limited by the on-board memory. Furthermore, it is difficult to handle a single position file with billions of atoms not only because it takes a long time to read in a row but also full domain decomposition takes hours. PolyPal addresses these challenges with a fully parallelized MPI input-output scheme that supports multiple export options on a Linux cluster. It has no limit in the system size with virtually perfect scalability. Additionally by controlling the size distribution and homogeneity of grains, the program can simulate different microstructures, as typically found in the bulk system or in thin-film samples, prepared with different fabrication processes. PolyPal will harness molecular dynamics codes in the coming age of the exascale computing.
DOI: 10.6084/m9.figshare.c.3860506_d8
title: Additional file 8: of unitas: the universal tool for annotation of small RNAs

description: Title of data: Table S7. Description of data: Detailed description of the artificial miRNA test dataset. (XLSX 1478Â kb)
DOI: 10.6084/m9.figshare.c.3860527_d2.v1
title: Additional file 2: of Trade in medicines andÂ the public's health: a time series analysis of import disruptions during the 2015 India-Nepal border blockade

description: Residual calculation for penicillin and streptomycin exports. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.c.3860515_d8.v1
title: Additional file 8: of Identification of QTLs controlling aroma volatiles using a ‘Fortune’ x ‘Murcott’ (Citrus reticulata) population

description: QTLs detected for juice volatiles in the mandarin F1 population, ‘Fortune’ x ‘Murcott’, using Kruskal-Wallis (K-W) and Composite Interval Mapping (CIM). This file contains a table showing the QTLs identified for juice volatiles in the ‘Fortune’ x ‘Murcott’ population over four harvests. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3860470_d8
title: Additional file 6: of Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array

description: Alleles and allele counts of RADseq SNPs with differential allele frequencies (FDR
DOI: 10.17632/9m7rd69bjs.1
title: HepLean: Digitalising high energy physics

description: We introduce HepLean, an open-source project to digitalise definitions, theorems, proofs, and calculations in high energy physics using the interactive theorem prover Lean 4. HepLean has the potential to benefit the high energy physics community in four ways: making it easier to find existing results, allowing the creation of new results using artificial intelligence and automated methods, allowing easy review of papers for mathematical correctness, and providing new ways to teach high energy physics. We will discuss these in detail. We will also demonstrate the digitalisation of three areas of high energy physics in HepLean: Cabibbo-Kobayashi-Maskawa matrices in flavour physics, local anomaly cancellation, and Higgs physics.
DOI: 10.17632/474ngf3t8d.1
title: Urban flower meadows

description: The data pertain to variables describing the internal structure and surroundings of urban flower meadows located within three major cities in Central Europe. The data were used to model the most optimal solutions for managing urban greenery in the form of multi-species urban meadows.
DOI: 10.6084/m9.figshare.c.3860548_d2
title: Additional file 2: of A network perspective on patient experiences and health status: the Medical Expenditure Panel Survey 2004 to 2011

description: Appendix 2. Scores of the Bayesian network algorithms. The scores of the Bayesian network algorithms, used to assess model fit and select the algorithm for analysis. (XLSX 7Â kb)
DOI: 10.6084/m9.figshare.c.3860470_d10.v1
title: Additional file 8: of Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array

description: Differential SolCAP SNPs in 275 genes in the QUEST case-control populations. Trait TSC is highlighted blue, TY orange and TSY green. (XLSX 84 kb)
DOI: 10.6084/m9.figshare.c.3860470_d10
title: Additional file 8: of Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array

description: Differential SolCAP SNPs in 275 genes in the QUEST case-control populations. Trait TSC is highlighted blue, TY orange and TSY green. (XLSX 84 kb)
DOI: 10.6084/m9.figshare.c.3860560_d4.v1
title: Additional file 4: Figure S1. of A history of hybrids? Genomic patterns of introgression in the True Geese

description: Distribution of gene tree divergence times for all goose species. All distributions show a single peak, indicating gene flow during divergence. The divergence time of several gene trees was close to zero, suggesting low levels of recent gene flow between certain species. Final three figures represent the three subspecies of Brent Goose, which is depicted in the lower right panel. (ZIP 2715Â kb)
DOI: 10.6084/m9.figshare.c.3860563_d1
title: Additional file1: of Empirical advances with text mining of electronic health records

description: Empirical Advances with, Annex 1, The physiotherapy corpus, content: the 2616 remaining de-identified textual clinical narratives of the 1015 residentsâ   sample in French (XLS 233 kb)
DOI: 10.6084/m9.figshare.c.3860554_d2
title: Additional file 2: of The porcine translational research database: a manually curated, genomics and proteomics-based research resource

description: Artifactually duplicated genes in Ensembl build 10.2. Gene names, Ensembl and NCBI loci numbers and NCBI genome build 10.2 coordinates of artifactually duplicated genes (XLSX 282 kb)
DOI: 10.6084/m9.figshare.c.3860557_d4.v1
title: Additional file 4: of Costs and expected gain in lifetime health from intensive care versus general ward care of 30,712 individual patients: a distribution-weighted cost-effectiveness analysis

description: Lifetable Norway, 2011. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3860560_d4
title: Additional file 4: Figure S1. of A history of hybrids? Genomic patterns of introgression in the True Geese

description: Distribution of gene tree divergence times for all goose species. All distributions show a single peak, indicating gene flow during divergence. The divergence time of several gene trees was close to zero, suggesting low levels of recent gene flow between certain species. Final three figures represent the three subspecies of Brent Goose, which is depicted in the lower right panel. (ZIP 2715Â kb)
DOI: 10.6084/m9.figshare.c.3860557_d4
title: Additional file 4: of Costs and expected gain in lifetime health from intensive care versus general ward care of 30,712 individual patients: a distribution-weighted cost-effectiveness analysis

description: Lifetable Norway, 2011. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3860560_d5.v1
title: Additional file 5: Figure S2. of A history of hybrids? Genomic patterns of introgression in the True Geese

description: Estimates of historical effective population sizes for all goose species, based on a PSMC analysis. Final three figures represent the three subspecies of Brent Goose, which is depicted in the lower right panel. (ZIP 766Â kb)
DOI: 10.6084/m9.figshare.c.3860554_d3.v1
title: Additional file 3: of The porcine translational research database: a manually curated, genomics and proteomics-based research resource

description: Porcine or artiodactyl-specific paralogs. Gene names, Ensembl and NCBI loci numbers and Build 10.2 NCBI gene coordinates of porcine or artiodactyl-specific paralogs (XLSX 58 kb)