cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5084242.v3
title: NEC_deidentified.dta

description: Data used in a case-crossover study of neonatal intensive care infants born at ≤ 32 weeks’ gestation who were admitted to 5 central Ohio intensive care units from January 2012-July 2016 and developed necrotizing enterocolitis (NEC) Bell Stage ≥2. Each patient served as their own control, with exposure during the 48-hour period just prior to NEC onset (hazard period) being compared to a preceding 48-hour control period, thus eliminating confounding by patient factors fixed between both intervals. The goal was to evaluate the short-term effects of feed fortification, feed volume increase, and PRBC transfusion on the odds of developing NEC.<br><br>All dates were scrambled with a fixed number of days.
DOI: 10.6084/m9.figshare.5082718.v1
title: Spreadsheet of data comparing international output

description: Data serving as the basis for analysis of national impact for the article in <i>Nature</i>, October 5, 2017.<br>
DOI: 10.6084/m9.figshare.5084242.v2
title: NEC_deidentified.dta

description: Data used in a case-crossover study of neonatal intensive care infants born at ≤ 32 weeks’ gestation who were admitted to 5 central Ohio intensive care units from January 2012-July 2016 and developed necrotizing enterocolitis (NEC) Bell Stage ≥2. Each patient served as their own control, with exposure during the 48-hour period just prior to NEC onset (hazard period) being compared to a preceding 48-hour control period, thus eliminating confounding by patient factors fixed between both intervals. The goal was to evaluate the short-term effects of feed fortification, feed volume increase, and PRBC transfusion on the odds of developing NEC.<br><br>All dates were scrambled with a fixed number of days.
DOI: 10.6084/m9.figshare.5082697
title: Test Run Output in SPSS format

description: Test Run Output in SPSS format
DOI: 10.6084/m9.figshare.5082718.v2
title: Spreadsheet of data comparing international output

description: Data serving as the basis for analysis of national impact for the article in <i>Nature</i>, October 5, 2017.<br>
DOI: 10.6084/m9.figshare.5082685
title: Neural network output in Word

description: Neural network output in Word
DOI: 10.6084/m9.figshare.5082691
title: Neural network data in SPSS

description: Neural network data in SPSS
DOI: 10.6084/m9.figshare.5082718.v3
title: Spreadsheet of data comparing international output

description: Data serving as the basis for analysis of national impact for the article in <i>Nature</i>, October 5, 2017.<br>
DOI: 10.6084/m9.figshare.5082682
title: Effect size base data in excel

description: Effect size base data in excel
DOI: 10.6084/m9.figshare.5082685.v1
title: Neural network output in Word

description: Neural network output in Word
DOI: 10.6084/m9.figshare.5082667
title: Effect Size Extraction

description: Effect size base data in Word
DOI: 10.6084/m9.figshare.5082667.v1
title: Effect Size Extraction

description: Effect size base data in Word
DOI: 10.6084/m9.figshare.5082643
title: Effect Size Extraction_Base_Data_1.docx

description: Data files for the paper
DOI: 10.6084/m9.figshare.5082682.v1
title: Effect size base data in excel

description: Effect size base data in excel
DOI: 10.6084/m9.figshare.5082718.v4
title: Spreadsheet of data comparing international output

description: Data (with some corrections) serving as the basis for analysis of national impact for the article in <i>Nature</i>, October 5, 2017. Also the data supports a forthcoming full treatment in Frontiers. <br>
DOI: 10.6084/m9.figshare.5082649
title: Interview audio files (password protected)

description: The full audio files of the interviews that were conducted to discover features for the Web Archiving Considerations Framework.
DOI: 10.6084/m9.figshare.5082598
title: Springhare FEA

description: Files for finite element analysis of a model of the cranium of Pedetes capensis, the East African springhare, for use with VOX-FE.<br>Avizo reconstruction: Pedetes-lowres.amModel file: Pedetes-model.txtProject files: proj-Pedetes-ODV-I.txt; proj-Pedetes-ODV-biPM.txt; proj-Pedetes-ODV-biM1.txt; proj-Pedetes-ODV-biM2.txt; proj-Pedetes-ODV-biM3.txt.GMM landmark file: Pedetes-lm.txtResults file containing bite forces and PC scores from GMM analysis: Pedetes bite force and landmarks.xls<br><br><br>
DOI: 10.6084/m9.figshare.5082649.v1
title: Interview audio files (password protected)

description: The full audio files of the interviews that were conducted to discover features for the Web Archiving Considerations Framework.
DOI: 10.6084/m9.figshare.5082598.v2
title: Springhare FEA

description: Files for finite element analysis of a model of the cranium of Pedetes capensis, the East African springhare, for use with VOX-FE.<br>Avizo reconstruction: Pedetes-lowres.amModel file: Pedetes-model.txtProject files: proj-Pedetes-ODV-I.txt; proj-Pedetes-ODV-biPM.txt; proj-Pedetes-ODV-biM1.txt; proj-Pedetes-ODV-biM2.txt; proj-Pedetes-ODV-biM3.txt.GMM landmark file: Pedetes-lm.txtResults file containing bite forces and PC scores from GMM analysis: Pedetes bite force and landmarks.xls<br><br><br>
DOI: 10.6084/m9.figshare.5082490
title: Validity of Danish Breast Cancer Group (DBCG) registry data used in the predictors of breast cancer recurrence (<i>ProBeCaRe</i>) premenopausal breast cancer cohort study

description: <b>Background:</b> Validation studies of the Danish Breast Cancer Group (DBCG) registry show good agreement with medical records for adjuvant treatment data, but inconsistent recurrence information. No studies have validated changes in menopausal status or endocrine therapy during follow-up. In a longitudinal study, we validated DBCG data using medical records as the gold standard. <b>Material and methods:</b> From a cohort of 5959 premenopausal women diagnosed during 2002–2010 with stage I–III breast cancer, we selected 151 patients – 77 estrogen-receptor-positive and 74 estrogen-receptor-negative – from three hospitals. We assessed the validity of DBCG registry data on patient, tumor, and treatment factors, and follow-up information on menopausal transition, changes in endocrine therapy, and recurrence. We computed positive predictive values (PPVs) with 95% confidence intervals (95%CI). <b>Results:</b> Agreement was near perfect for tumor size, lymph node involvement, receptor status, surgery type, and receipt of radiotherapy, chemotherapy, or tamoxifen treatment. The PPV for a change in endocrine therapy in the DBCG was 96% (95%CI = 83, 100). The PPV for menopausal transition was 61% (95%CI = 42, 77). The PPV for DBCG-recorded recurrence was 100%. However, of 19 patients who had a recurrence documented in their medical record, 13 had the recurrence registered in DBCG. <b>Conclusions:</b> DBCG data are valid for most epidemiological studies of breast cancer treatment. Data on menopausal transition may be less valid, though this interpretation depends on the suitability of medical records for making this assessment. Although recurrence is missing for some, this would not bias most ratio measures of association.
DOI: 10.6084/m9.figshare.5082598.v1
title: Springhare FEA

description: Files for finite element analysis of a model of the cranium of Pedetes capensis, the East African springhare, for use with VOX-FE.<br>Model file: Pedetes-model.txtProject files: proj-Pedetes-ODV-I.txt; proj-Pedetes-ODV-biPM.txt; proj-Pedetes-ODV-biM1.txt; proj-Pedetes-ODV-biM2.txt; proj-Pedetes-ODV-biM3.txt.GMM landmark file: Pedetes-lm.txtResults file containing bite forces and PC scores from GMM analysis: Pedetes bite force and landmarks.xls<br><br><br>
DOI: 10.6084/m9.figshare.5082490.v1
title: Validity of Danish Breast Cancer Group (DBCG) registry data used in the predictors of breast cancer recurrence (<i>ProBeCaRe</i>) premenopausal breast cancer cohort study

description: <b>Background:</b> Validation studies of the Danish Breast Cancer Group (DBCG) registry show good agreement with medical records for adjuvant treatment data, but inconsistent recurrence information. No studies have validated changes in menopausal status or endocrine therapy during follow-up. In a longitudinal study, we validated DBCG data using medical records as the gold standard. <b>Material and methods:</b> From a cohort of 5959 premenopausal women diagnosed during 2002–2010 with stage I–III breast cancer, we selected 151 patients – 77 estrogen-receptor-positive and 74 estrogen-receptor-negative – from three hospitals. We assessed the validity of DBCG registry data on patient, tumor, and treatment factors, and follow-up information on menopausal transition, changes in endocrine therapy, and recurrence. We computed positive predictive values (PPVs) with 95% confidence intervals (95%CI). <b>Results:</b> Agreement was near perfect for tumor size, lymph node involvement, receptor status, surgery type, and receipt of radiotherapy, chemotherapy, or tamoxifen treatment. The PPV for a change in endocrine therapy in the DBCG was 96% (95%CI = 83, 100). The PPV for menopausal transition was 61% (95%CI = 42, 77). The PPV for DBCG-recorded recurrence was 100%. However, of 19 patients who had a recurrence documented in their medical record, 13 had the recurrence registered in DBCG. <b>Conclusions:</b> DBCG data are valid for most epidemiological studies of breast cancer treatment. Data on menopausal transition may be less valid, though this interpretation depends on the suitability of medical records for making this assessment. Although recurrence is missing for some, this would not bias most ratio measures of association.
DOI: 10.6084/m9.figshare.5082445
title: User Guide: Dense facial tissue depth mapping of 3D CT models using Meshlab

description: This user guide outlines a method for objective, dense facial tissue depth mapping of 3D face and skull STL models generated from computed tomography (CT) scans, in an effort to produce a standardized reference dataset for forensic craniofacial identification applications. Any 3D STL face and skull models that are in correct anatomical orientation to each other can be mapped with this method.<br>The methods described include hollowing and cropping of a face model to obtain a face "shell," mapping the face to the skull, colorizing and saving mapped data, and visualization of mapped data.<br>The purpose of this guide is to provide an objective, standardized method for mapping facial tissue depth values for forensic craniofacial identification applications using free software.<br>We have also attached a zipped fileset of Meshlab scripts (with instructions for installation included in the zip) that will assist with splitting the face and skull maps into 1 mm increments for enhanced visualizations.<br>Images were generated with publicly available de-identified CT scans from The Cancer Imaging Archives (http://www.cancerimagingarchive.net/<b>) (</b>doi: 10.1007/s10278-013-9622-7)<b>.</b><b><br></b>A link to the accompanying manuscript will be provided when published.
DOI: 10.6084/m9.figshare.5082421
title: The Postural Assessment Scale for Stroke Patients: translation into Norwegian, cultural adaptation, and examination of reliability

description: <b>Background:</b> To translate the Modified Swedish version of Postural Assessment Scale for Stroke (SwePASS) into Norwegian (SwePASS-NV) and assess its intra- and interrater reliability. <b>Methods:</b> Translation and cross-cultural adaptation was accomplished according to international guidelines. Forty-seven adults, suffering a stroke within the last 6 months, were strategically recruited and allocated into groups according to five different levels of function. Their performance on SwePASS-NV was video-recorded and then scored by three raters twice, with a minimum of 4 weeks between sessions. Relative reliability was investigated by calculating intraclass correlation coefficients (ICC<sub>1.1</sub> and ICC<sub>3.1</sub>). Absolute reliability was analysed using within-subject SD (S<sub>w</sub>) and smallest detectable difference (SDD). For individual items, Cohen’s kappa (<i>k</i>) and percentage of agreement were calculated. <b>Results:</b> The study showed excellent intra- and interrater reliability (ICC<sub>1.1</sub> and ICC<sub>3.1</sub> ≥0.99) for SwePASS-NV. <i>K</i>-values for the individual items ranged between 0.68 and 1.00. Percentages of agreement ranged from 77% to 100%. SDD at 95% confidence interval was ≤2 points for intrarater assessments and ≤3 points for interrater assessments. <b>Conclusions:</b> This study demonstrated very high intra- and interrater reliability of the SwePASS-NV in adults within the first 6 months after stroke. All items showed very high or high agreement.
DOI: 10.6084/m9.figshare.5082421.v1
title: The Postural Assessment Scale for Stroke Patients: translation into Norwegian, cultural adaptation, and examination of reliability

description: <b>Background:</b> To translate the Modified Swedish version of Postural Assessment Scale for Stroke (SwePASS) into Norwegian (SwePASS-NV) and assess its intra- and interrater reliability. <b>Methods:</b> Translation and cross-cultural adaptation was accomplished according to international guidelines. Forty-seven adults, suffering a stroke within the last 6 months, were strategically recruited and allocated into groups according to five different levels of function. Their performance on SwePASS-NV was video-recorded and then scored by three raters twice, with a minimum of 4 weeks between sessions. Relative reliability was investigated by calculating intraclass correlation coefficients (ICC<sub>1.1</sub> and ICC<sub>3.1</sub>). Absolute reliability was analysed using within-subject SD (S<sub>w</sub>) and smallest detectable difference (SDD). For individual items, Cohen’s kappa (<i>k</i>) and percentage of agreement were calculated. <b>Results:</b> The study showed excellent intra- and interrater reliability (ICC<sub>1.1</sub> and ICC<sub>3.1</sub> ≥0.99) for SwePASS-NV. <i>K</i>-values for the individual items ranged between 0.68 and 1.00. Percentages of agreement ranged from 77% to 100%. SDD at 95% confidence interval was ≤2 points for intrarater assessments and ≤3 points for interrater assessments. <b>Conclusions:</b> This study demonstrated very high intra- and interrater reliability of the SwePASS-NV in adults within the first 6 months after stroke. All items showed very high or high agreement.
DOI: 10.6084/m9.figshare.5082451.v1
title: AveDissR: An R function for assessing genetic distinctness and genetic redundancy

description: These two files (Appendix S1 and Appendix S2) are the supplemental materials for our paper: Mo-Hua Yang and Yong-Bi Fu, 2017. AveDissR: An R function for assessing genetic distinctness and genetic redundancy. Applications in Plant Sciences. Specifically, Appendix S1 is the R package, and Appendix S2 is the instruction used for reading this paper and using R function.<br>
DOI: 10.6084/m9.figshare.5082409
title: Dataset for: Diabetic rats present higher urinary loss of proteins and lower renal expression of megalin, cubilin, ClC-5 and CFTR

description: Diabetic nephropathy (DN) occurs in around 40% of those with diabetes. Proteinuria is the main characteristic of DN and develops as a result of increased permeability of the glomerulus capillary wall and/or decreased proximal tubule endocytosis. The goal of this work was to evaluate renal function and the expression of megalin, cubilin, CFTR (cystic fibrosis transmembrane conductance regulator) and ClC-5 in the proximal tubule and renal cortex of rats with type 1 diabetes. Male Wistar rats were randomly assigned to control (CTRL) and diabetic (DM) groups for 4 weeks. Renal function was assessed in 24-h urine by calculating clearance and fractional excretion of solutes. The RNA and protein content of ClC-5, CFTR, megalin and cubilin was determined in the renal proximal tubule and cortex using real-time polymerase chain reaction and western blotting techniques, respectively. The results showed higher creatinine clearance and higher urinary excretion of proteins, albumin and transferrin in the DM group than in the CTRL group. Furthermore, the renal cortex and proximal tubule of diabetic animals showed downregulation of megalin, cubilin, ClC-5 and CFTR, critical components of the endocytic apparatus. These data suggest dysfunction in proximal tubule low-molecular-weight endocytosis and protein glomerulus filtration in the kidney of diabetic rats.
DOI: 10.6084/m9.figshare.5082409.v1
title: Dataset for: Diabetic rats present higher urinary loss of proteins and lower renal expression of megalin, cubilin, ClC-5 and CFTR

description: Diabetic nephropathy (DN) occurs in around 40% of those with diabetes. Proteinuria is the main characteristic of DN and develops as a result of increased permeability of the glomerulus capillary wall and/or decreased proximal tubule endocytosis. The goal of this work was to evaluate renal function and the expression of megalin, cubilin, CFTR (cystic fibrosis transmembrane conductance regulator) and ClC-5 in the proximal tubule and renal cortex of rats with type 1 diabetes. Male Wistar rats were randomly assigned to control (CTRL) and diabetic (DM) groups for 4 weeks. Renal function was assessed in 24-h urine by calculating clearance and fractional excretion of solutes. The RNA and protein content of ClC-5, CFTR, megalin and cubilin was determined in the renal proximal tubule and cortex using real-time polymerase chain reaction and western blotting techniques, respectively. The results showed higher creatinine clearance and higher urinary excretion of proteins, albumin and transferrin in the DM group than in the CTRL group. Furthermore, the renal cortex and proximal tubule of diabetic animals showed downregulation of megalin, cubilin, ClC-5 and CFTR, critical components of the endocytic apparatus. These data suggest dysfunction in proximal tubule low-molecular-weight endocytosis and protein glomerulus filtration in the kidney of diabetic rats.
DOI: 10.6084/m9.figshare.5082451.v2
title: AveDissR: An R function for assessing genetic distinctness and genetic redundancy

description: These two files (Appendix S1 and Appendix S2) are the supplemental materials for our paper: Mo-Hua Yang and Yong-Bi Fu, 2017. AveDissR: An R function for assessing genetic distinctness and genetic redundancy. Applications in Plant Sciences. Specifically, Appendix S1 is the R package, and Appendix S2 is the instruction used for reading this paper and using R function. AveDissR version 1 generates jpeg figures, and AveDissR version 2 generates pdf figures, while the rest remains the same.<br>
DOI: 10.6084/m9.figshare.5082331
title: Data from: The power of 3D fractal dimensions for comparative shape and structural complexity analyses of irregularly shaped organisms

description: The 3D meshes of the stony corals analysed in the publication of Reichert, J; Backes, A.; Schubert, P. & Wilke, T.<strong></strong><strong></strong> (accepted): The power of 3D fractal dimensions for comparative shape and structural complexity analyses of irregularly shaped organisms. Methods in Ecology and Evolution.
DOI: 10.6084/m9.figshare.5082265
title: Exploiting inter-image similarity and ensemble of extreme learners for fixation prediction using deep features

description: The pre-trained models for our saliency paper,<br>Exploiting inter-image similarity and ensemble of extreme learners for fixation prediction using deep features<br>
DOI: 10.6084/m9.figshare.5082265.v1
title: Exploiting inter-image similarity and ensemble of extreme learners for fixation prediction using deep features

description: The pre-trained models for our saliency paper,<br>Exploiting inter-image similarity and ensemble of extreme learners for fixation prediction using deep features<br>
DOI: 10.6084/m9.figshare.5082220
title: Data from Interacting stressors and the potential for adaptation in a changing world: responses of populations and individuals

description: To accurately predict the impact of environmental change, it is necessary to assay effects of key interacting stressors on vulnerable organisms, and the potential resiliency of their populations. Yet, for the most part, these critical data are missing. We examined the effects of two common abiotic stressors predicted to interact with climate change, salinity and temperature, on the embryonic survival and development of a model freshwater vertebrate, the rough-skinned newt (<i>Taricha granulosa</i>) from different populations. We found that salinity and temperature significantly interacted to affect newt embryonic survival and development, with the negative effects of salinity most pronounced at temperature extremes. We also found significant variation among, and especially within, populations, with different females varying in the performance of their eggs at different salinity–temperature combinations, possibly providing the raw material for future natural selection. Our results highlight the complex nature of predicting responses to climate change in space and time, and provide critical data towards that aim.
DOI: 10.6084/m9.figshare.5082331.v1
title: Meshes t0

description: The 3D meshes of the stony corals analysed in the publication of Reichert, J; Backes, A.; Schubert, P. & Wilke, T.<strong></strong><strong></strong> (accepted): The power of 3D fractal dimensions for comparative shape and structural complexity analyses of irregularly shaped organisms. Methods in Ecology and Evolution.
DOI: 10.6084/m9.figshare.5082331.v2
title: 3D meshes and raw data

description: The 3D meshes of the stony corals analysed in the publication of Reichert, J; Backes, A.; Schubert, P. & Wilke, T.<strong></strong><strong></strong> (accepted): The power of 3D fractal dimensions for comparative shape and structural complexity analyses of irregularly shaped organisms. Methods in Ecology and Evolution.
DOI: 10.6084/m9.figshare.5082178
title: Preprocessed Dramas from TextGrid

description: Dramatic texts from the textgrid repository, preprocessed using DramaNLP pipeline
DOI: 10.6084/m9.figshare.5082331.v3
title: 3D meshes and raw data

description: The 3D meshes of the stony corals analysed in the publication of Reichert, J; Backes, A.; Schubert, P. & Wilke, T.<strong></strong><strong></strong> (accepted): The power of 3D fractal dimensions for comparative shape and structural complexity analyses of irregularly shaped organisms. Methods in Ecology and Evolution.
DOI: 10.6084/m9.figshare.5082178.v1
title: Preprocessed Dramas from TextGrid

description: Dramatic texts from the textgrid repository, preprocessed using DramaNLP pipeline
DOI: 10.6084/m9.figshare.5082331.v4
title: 3D meshes and raw data

description: The 3D meshes of the stony corals analysed in the publication of Reichert, J; Backes, A.; Schubert, P. & Wilke, T.<strong></strong><strong></strong> (accepted): The power of 3D fractal dimensions for comparative shape and structural complexity analyses of irregularly shaped organisms. Methods in Ecology and Evolution.
DOI: 10.6084/m9.figshare.5082115
title: Supplementary Material for: A Role of Remote Organs Effect in Acute Kidney Injury Outcome?

description: Acute kidney injury (AKI) has been associated with both short- and long-term outcomes. To date, there is still a debate whether the increase risk of morbidity and mortality is directly due to AKI occurrence. There is, however, a potential causal impact of AKI on outcome, but evidence of this association is yet lacking. The hypothesis of remote organ damage and dysfunction (heart, lung, liver, brain, etc.) has emerged over the last decade and may explain the reason for the potential negative impact of AKI on outcome. The aim of this review was to describe findings concerning the remote effect of AKI in animal models and human studies.