cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28696341
title: Formalistic data and code availability policy in high-profile medical journals and pervasive policy-practice gaps in published articles: A meta-research study

description: Poor data and code (DAC) sharing undermines open science principles. This study evaluates the stringency of DAC availability policies in high-profile medical journals and identifies policy-practice gaps (PPG) in published articles. DAC availability policies of 931 Q1 medical journals (Clarivate JCR 2021) were evaluated, with PPGs quantified across 3,191 articles from The BMJ, JAMA, NEJM, and The Lancet. Only 9.1% (85/931) of journals mandated DAC sharing and availability statements, with 70.6% of these lacking mechanisms to verify authenticity, and 61.2% allowing publication despite invalid sharing. Secondary analysis revealed a disproportionate distribution of policies across subspecialties, with 18.6% (11/59) of subspecialties having &gt;20% journals with mandated policies. Journal impact factors exhibited positive correlations with the stringency of availability statement policies (ρ = 0.20, <i>p</i> &lt; 0.001) but not with sharing policies (ρ = 0.01, <i>p</i> = 0.737). Among the 3,191 articles, PPGs were observed in over 90% of cases. Specifically, 33.7% lacked DAC availability statements, 23.3% refused sharing (58.4% of which without justification in public statements), and 13.5% declared public sharing, with 39.0% being unreachable. Finally, only 0.5% achieved full computational reproducibility. Formalistic policies and prevalent PPGs undermine DAC transparency, necessitating a supportive publication ecosystem that empowers authors to uphold scientific responsibility and integrity.
DOI: 10.6084/m9.figshare.28696341.v1
title: Formalistic data and code availability policy in high-profile medical journals and pervasive policy-practice gaps in published articles: A meta-research study

description: Poor data and code (DAC) sharing undermines open science principles. This study evaluates the stringency of DAC availability policies in high-profile medical journals and identifies policy-practice gaps (PPG) in published articles. DAC availability policies of 931 Q1 medical journals (Clarivate JCR 2021) were evaluated, with PPGs quantified across 3,191 articles from The BMJ, JAMA, NEJM, and The Lancet. Only 9.1% (85/931) of journals mandated DAC sharing and availability statements, with 70.6% of these lacking mechanisms to verify authenticity, and 61.2% allowing publication despite invalid sharing. Secondary analysis revealed a disproportionate distribution of policies across subspecialties, with 18.6% (11/59) of subspecialties having &gt;20% journals with mandated policies. Journal impact factors exhibited positive correlations with the stringency of availability statement policies (ρ = 0.20, <i>p</i> &lt; 0.001) but not with sharing policies (ρ = 0.01, <i>p</i> = 0.737). Among the 3,191 articles, PPGs were observed in over 90% of cases. Specifically, 33.7% lacked DAC availability statements, 23.3% refused sharing (58.4% of which without justification in public statements), and 13.5% declared public sharing, with 39.0% being unreachable. Finally, only 0.5% achieved full computational reproducibility. Formalistic policies and prevalent PPGs undermine DAC transparency, necessitating a supportive publication ecosystem that empowers authors to uphold scientific responsibility and integrity.
DOI: 10.5281/zenodo.18677143
title: Naturalistic Mobile Navigation Dataset (Online Experiment, n=91)

description: This dataset contains behavioral navigation logs collected in a naturalistic online environment.Data was recorded during real-world interaction sessions and includes only implicit behavioral variables.No explicit psychological instruments or ground truth labels are present.The dataset supports research in human–computer interaction, behavioral modeling, intelligent interfaces, and probabilistic user modeling.
DOI: 10.5281/zenodo.18677142
title: Naturalistic Mobile Navigation Dataset (Online Experiment, n=91)

description: This dataset contains behavioral navigation logs collected in a naturalistic online environment.Data was recorded during real-world interaction sessions and includes only implicit behavioral variables.No explicit psychological instruments or ground truth labels are present.The dataset supports research in human–computer interaction, behavioral modeling, intelligent interfaces, and probabilistic user modeling.
DOI: 10.15468/dl.a6g7w8
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "OccurrenceStatus is Present",
 "TaxonKey is Brustiarius nox"
 ]
}

 The dataset includes 19 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026574-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6t8bt4
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platymantis negrosensis"
 ]
}

 The dataset includes 165 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026577-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmcy5a
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platymantis paengi"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026576-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ajwfex
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Mogurnda lineata, Mogurnda vitta)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026578-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18677440
title: SARS-CoV-2 Infektionen in Deutschland

description: Im Datensatz "SARS-CoV-2 Infektionen in Deutschland" des Robert Koch-Instituts werden die Daten basierend auf Meldungen zu SARS-CoV-2 Infektionen nach dem Infektionsschutzgesetz (IfSG) bereitgestellt. Darin enthalten sind Informationen auf Landkreisebene zu bestätigten Infektionen, Todesfällen und Genesungen, differenziert nach Altersgruppen und Geschlecht. Diese Daten dienen als Grundlage für epidemiologische Bewertungen und gesundheitspolitische Maßnahmen.
DOI: 10.5061/dryad.xgxd254w3
title: Data from: Why adding habitat can destabilize species coexistence - consequences to restoration

description: In the context of the looming biodiversity crisis, adding patches of
 habitat has been proposed as a restoration strategy in several ecosystems.
 However, these interventions rarely mimic the conditions of the natural
 habitats precisely. Consequently, not all species equally benefit from the
 restored habitat, fostering a difference in species fitness. Using a
 metapopulation model with a competition-colonization trade-off, we explore
 how the introduction of habitat patches where the competition ability of
 the superior competitor is either enhanced or diminished affects species
 coexistence. We show that adding habitat changes the coexistence regime at
 the regional scale, potentially leading to undesired consequences. Our
 results suggest that inferior competitors with colonization rates close to
 the lower bound that enables coexistence are particularly vulnerable to
 this kind of intervention. The impact on the coexistence regime is also
 dependent on the amount of habitat restored as well as the extent to which
 the new habitat distorts the competitive capacity of the superior
 competitor. Our results highlight the double-edged sword effect of
 suboptimal restoration, revealing potential unintended consequences that
 could exacerbate biodiversity loss. On the other hand, restoration
 favoring endangered species is also identified as a conservation tool. The
 present study advances in the mechanistic comprehension of habitat
 restoration, a necessary endeavor in the face of the challenges posed by
 global change.
description: # Data from: Why adding habitat can destabilize species coexistence -
 consequences to restoration Dataset DOI:
 [10.5061/dryad.xgxd254w3](https://doi.org/10.5061/dryad.xgxd254w3) ##
 Description of the data and file structure .csv file contains the results
 of the numerical integration of the system of equations present in the
 paper. Columns represent the occupied habitat by each species, as well as
 the sum of them, and the value of the variable parameters explored. ###
 Files and variables #### File: Numerical_integration_results.csv
 **Description:**  ##### Variables * P1A: Occupied habitat of type A by
 species 1 * P1B: Occupied habitat of type B by species 1 * P2A: Occupied
 habitat of type A by species 2 * P2B: Occupied habitat of type B by
 species 2 * HA: Amount of habitat A * HB: Amount of habitat B * phi: value
 of the disruption of the competition in the new habitat, parameter *phi* *
 s: value of the competition parameter *s* * c1: colonization rate of
 species 1 * c2:colonization rate of species 2 * m: extinction rate, common
 to both species **Code/software** .csv file can be handled in any
 compatible software
DOI: 10.15468/dl.5vyqpx
title: Occurrence Download

description: A dataset containing 5466 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Schizachyrium fragile"
 ]
}

 The dataset includes 5466 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026581-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2fjr22
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leiopelma archeyi",
 "Year 1990-2026"
 ]
}

 The dataset includes 192 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026579-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3daag
title: Occurrence Download

description: A dataset containing 4416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Material citation)",
 "CoordinateUncertaintyInMeters is less than or equal to 1000.0",
 "Country is Mexico",
 "Geometry POLYGON((-98.66328 19.39927,-98.67397 19.40421,-98.68523 19.40458,-98.70457 19.41071,-98.71295 19.41159,-98.72563 19.4003,-98.74113 19.40075,-98.74687 19.403,-98.75028 19.39484,-98.77074 19.40174,-98.77774 19.40828,-98.79601 19.40741,-98.80122 19.39897,-98.81094 19.40005,-98.81151 19.40407,-98.83404 19.40156,-98.85103 19.39428,-98.85314 19.38656,-98.8747 19.39096,-98.87488 19.38384,-98.8861 19.38025,-98.88546 19.37306,-98.89276 19.36395,-98.90318 19.35497,-98.91032 19.35817,-98.91995 19.34586,-98.92661 19.34549,-98.93188 19.34095,-98.93978 19.34004,-98.95196 19.33316,-98.95388 19.32936,-98.92221 19.29476,-98.91799 19.29094,-98.9044 19.28911,-98.89408 19.29011,-98.87926 19.28883,-98.87426 19.30399,-98.86203 19.30047,-98.85972 19.30487,-98.84755 19.3014,-98.85199 19.28927,-98.84588 19.28674,-98.83494 19.28875,-98.82955 19.29686,-98.81447 19.30777,-98.80845 19.30779,-98.80481 19.30137,-98.80983 19.29483,-98.81047 19.28546,-98.80194 19.28804,-98.78874 19.29902,-98.78194 19.30103,-98.7725 19.30907,-98.76548 19.31237,-98.75051 19.31213,-98.74379 19.3162,-98.72584 19.31589,-98.72211 19.31923,-98.70659 19.31091,-98.69898 19.30848,-98.69276 19.29373,-98.68689 19.27298,-98.68289 19.26478,-98.66855 19.24916,-98.66189 19.24687,-98.6532 19.25544,-98.64361 19.26085,-98.63187 19.26394,-98.66348 19.32479,-98.6605 19.35126,-98.65495 19.3493,-98.64448 19.352,-98.6404 19.36472,-98.65044 19.36455,-98.65406 19.3694,-98.65813 19.38271,-98.65714 19.39708,-98.66328 19.39927))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 4416 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026582-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fx3ga3
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leiopelma archeyi",
 "Year 2000-2026"
 ]
}

 The dataset includes 192 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026583-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwhd8e
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "OccurrenceStatus is Present",
 "TaxonKey is Craterocephalus kailolae"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026584-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkhacj
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platymantis panayensis"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026585-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbxmfa
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platymantis pseudodorsalis"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026586-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wx3j93
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "OccurrenceStatus is Present",
 "TaxonKey is Craterocephalus pimatuae"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026587-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17338265
title: Data analysis for ILL experiment #CRG-3132

description: Experiment CRG-3132 



Directory: ./data 

DOI: https://doi.ill.fr/10.5291/ILL-DATA.CRG-3132 

Date: 13/jun/2024 - 20/jun/2024 (ILL reactor cycle 20242) 

Instrument: IN12, https://www.ill.eu/for-ill-users/instruments/instruments-list/in12 

Data policy: https://www.ill.eu/users/user-guide/after-your-experiment/data-management 

Experimental team: 


 




Name
Affiliation
Roles


Weber Tobias
ILL Grenoble
Main proposer, Lab responsible, Experimenter


Schmalzl Karin
ILL Grenoble
Local contact


Bauer Andreas
TUM, FRM-II Garching
Crystal Grower


Pfleiderer Christian
TUM, FRM-II Garching
Proposer




 

Scripts for experiment CRG-3132



Directory: ./scripts

Author: Tobias Weber

License: GPLv3, see ./scripts/LICENSE

Software needed for data treatment scripts:



Takin:



https://github.com/ILLGrenoble/takin

https://doi.org/10.5281/zenodo.4117437



Skyrmion Model:



https://code.ill.fr/scientific-software/takin/plugins/mnsi

https://doi.org/10.5281/zenodo.5718363



Magpie (for Takin Python plugins):



https://github.com/ILLGrenoble/magpie

https://doi.org/10.5281/zenodo.16180814
DOI: 10.5281/zenodo.17338264
title: Data analysis for ILL experiment #CRG-3132

description: Experiment CRG-3132 



Directory: ./data 

DOI: https://doi.ill.fr/10.5291/ILL-DATA.CRG-3132 

Date: 13/jun/2024 - 20/jun/2024 (ILL reactor cycle 20242) 

Instrument: IN12, https://www.ill.eu/for-ill-users/instruments/instruments-list/in12 

Data policy: https://www.ill.eu/users/user-guide/after-your-experiment/data-management 

Experimental team: 


 




Name
Affiliation
Roles


Weber Tobias
ILL Grenoble
Main proposer, Lab responsible, Experimenter


Schmalzl Karin
ILL Grenoble
Local contact


Bauer Andreas
TUM, FRM-II Garching
Crystal Grower


Pfleiderer Christian
TUM, FRM-II Garching
Proposer




 

Scripts for experiment CRG-3132



Directory: ./scripts

Author: Tobias Weber

License: GPLv3, see ./scripts/LICENSE

Software needed for data treatment scripts:



Takin:



https://github.com/ILLGrenoble/takin

https://doi.org/10.5281/zenodo.4117437



Skyrmion Model:



https://code.ill.fr/scientific-software/takin/plugins/mnsi

https://doi.org/10.5281/zenodo.5718363



Magpie (for Takin Python plugins):



https://github.com/ILLGrenoble/magpie

https://doi.org/10.5281/zenodo.16180814
DOI: 10.15468/dl.h7sazp
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "OccurrenceStatus is Present",
 "TaxonKey is Zenarchopterus robertsi"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026588-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ff56p
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Schizachyrium jeffreysii"
 ]
}

 The dataset includes 147 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026589-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pus734
title: Occurrence Download

description: A dataset containing 100275 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Adelomyia melanogenys",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2026",
 "HasCoordinate is true"
 ]
}

 The dataset includes 100275 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026550-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfhyjh
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "OccurrenceStatus is Present",
 "TaxonKey is Mogurnda pulchra"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026590-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18677248
title: Data and code for: Teleworking and carbon emission reduction: a study of university staff commuting
DOI: 10.15468/dl.zuxa7k
title: Occurrence Download

description: A dataset containing 686 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Schizachyrium pachyarthron"
 ]
}

 The dataset includes 686 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026591-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udw25h
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platymantis quezoni"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026594-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxnaku
title: Occurrence Download

description: A dataset containing 13353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aeronautes montivagus",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2026",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13353 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026593-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqzwft
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platymantis sierramadrensis"
 ]
}

 The dataset includes 36 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026592-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.71947/arim.jpmxp1225os9001-58
title: OS-127：レーザーラマン顕微鏡によるポリビニルアルコール（PVA）のラマン分光
DOI: 10.15468/dl.hfrvr6
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "OccurrenceStatus is Present",
 "TaxonKey is Oloplotosus luteus"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026595-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4g2t9q
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudomugil furcatus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026596-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.