cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14782488
title: Additional file 1 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 1: Fig. S1. PCA (A and B), OPLS-DA (C and D) score plots and OPLS-DA permutation plots (E and F) in faeces. A and B. PCA score plots, the abscissa PC1, and the ordinate PC2 represent the scores of the principal components ranking the first and the second, respectively, and different shapes of the scattered points represent the different groups of the samples. C and D. OPLS-DA score plots, the ordinate t[1]O represents the orthogonal principal component score, the abscissa t[1]P represents the predicted principal component score of the first principal component, and different shapes of the scattered points represent the different groups of the samples. E and F. OPLS-DA permutation plots. The abscissa correlation coefficient represents relevance. The Q2 and R2Y values reflect the model predictability and the fraction of explained variance, respectively.
DOI: 10.6084/m9.figshare.14782491.v1
title: Additional file 2 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 2: Fig. S2. Volcano plots in faeces (A and B). A and B. Volcano plots, each dot in the volcano map represents a metabolite, the abscissa shows the fold change value (take the logarithm of cardinal number 2), the ordinate represents the p value of Student's t test (take the negative number of base logarithm of 10), and the size of the scatter represents the VIP value of the OPLS-DA model: the larger the scatter, the greater the VIP value.
DOI: 10.6084/m9.figshare.14782494
title: Additional file 3 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 3: Table S1. Key differential metabolites of echinococcosis of faeces in POS. Table S2. Key differential metabolites of echinococcosis of faeces in NEG
DOI: 10.6084/m9.figshare.14782494.v1
title: Additional file 3 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 3: Table S1. Key differential metabolites of echinococcosis of faeces in POS. Table S2. Key differential metabolites of echinococcosis of faeces in NEG
DOI: 10.6084/m9.figshare.14782497
title: Additional file 4 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 4: Fig. S3. Heat map in faeces (A and B). A and B. The abscissa indicates different experimental groups, the ordinate means different metabolites compared with the normal control group, and the square coloured blocks at different spaces represent the relative expression of metabolites at corresponding positions.
DOI: 10.6084/m9.figshare.14782500.v1
title: Additional file 5 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 5: Fig. S4. Heat map of correlation analysis for group in faeces (A and B). A and B. The abscissa and ordinate represent the different metabolites of the group comparison. The square coloured blocks in different positions represent the correlation coefficient between the two metabolites at corresponding positions. Red shows positive correlation, blue shows negative correlation, and the darker the colour, the stronger the correlation. At the same time, the nonsignificant correlation was marked with a cross.
DOI: 10.6084/m9.figshare.14782497.v1
title: Additional file 4 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 4: Fig. S3. Heat map in faeces (A and B). A and B. The abscissa indicates different experimental groups, the ordinate means different metabolites compared with the normal control group, and the square coloured blocks at different spaces represent the relative expression of metabolites at corresponding positions.
DOI: 10.6084/m9.figshare.14782503
title: Additional file 6 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 6: Fig. S5. KEGG pathways map in faeces (A and B). A and B. KEGG pathways map. The red and blue dots indicate the metabolic pathways involved by the differentially expressed metabolites.
DOI: 10.6084/m9.figshare.14782503.v1
title: Additional file 6 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 6: Fig. S5. KEGG pathways map in faeces (A and B). A and B. KEGG pathways map. The red and blue dots indicate the metabolic pathways involved by the differentially expressed metabolites.
DOI: 10.6084/m9.figshare.14782500
title: Additional file 5 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 5: Fig. S4. Heat map of correlation analysis for group in faeces (A and B). A and B. The abscissa and ordinate represent the different metabolites of the group comparison. The square coloured blocks in different positions represent the correlation coefficient between the two metabolites at corresponding positions. Red shows positive correlation, blue shows negative correlation, and the darker the colour, the stronger the correlation. At the same time, the nonsignificant correlation was marked with a cross.
DOI: 10.6084/m9.figshare.14782506
title: Additional file 7 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 7: Fig. S6. Pathway analysis for group in faeces (A and B). A and B. Pathway analysis for group. In the bubble plots, different bubbles represent different metabolic pathway. The abscissa and the size of the bubble indicate the influence factor of the pathway in topological analysis. The larger the size, the greater the influence factors. The ordinate and the colour of the bubble show the p value of enrichment analysis (negative natural pair, i.e. - in (P)). The deeper the colour, the smaller the p value, and the more significant the enrichment degree.
DOI: 10.6084/m9.figshare.14782506.v1
title: Additional file 7 of Metabolic profiling of liver and faeces in mice infected with echinococcosis

description: Additional file 7: Fig. S6. Pathway analysis for group in faeces (A and B). A and B. Pathway analysis for group. In the bubble plots, different bubbles represent different metabolic pathway. The abscissa and the size of the bubble indicate the influence factor of the pathway in topological analysis. The larger the size, the greater the influence factors. The ordinate and the colour of the bubble show the p value of enrichment analysis (negative natural pair, i.e. - in (P)). The deeper the colour, the smaller the p value, and the more significant the enrichment degree.
DOI: 10.6084/m9.figshare.17083952
title: Additional file 2 of RNAseq analysis of treatment-dependent signaling changes during inflammation in a mouse cutaneous wound healing model

description: Additional file 2: Supplementary Table 1. Comprehensive list of DEGs responding to diclofenac and Tr14 over time.
DOI: 10.6084/m9.figshare.17083952.v1
title: Additional file 2 of RNAseq analysis of treatment-dependent signaling changes during inflammation in a mouse cutaneous wound healing model

description: Additional file 2: Supplementary Table 1. Comprehensive list of DEGs responding to diclofenac and Tr14 over time.
DOI: 10.6084/m9.figshare.17084057.v1
title: Additional file 5 of Identification of miRNA-mRNA network and immune-related gene signatures in IgA nephropathy by integrated bioinformatics analysis

description: Additional file 5: Supplemental Table S5. Predicted TFs of candidate DE-miRNAs.
DOI: 10.6084/m9.figshare.17084054
title: Additional file 4 of Identification of miRNA-mRNA network and immune-related gene signatures in IgA nephropathy by integrated bioinformatics analysis

description: Additional file 4: Supplemental Table S4. Predicted Target genes of candidate DE-miRNAs.
DOI: 10.6084/m9.figshare.17084057
title: Additional file 5 of Identification of miRNA-mRNA network and immune-related gene signatures in IgA nephropathy by integrated bioinformatics analysis

description: Additional file 5: Supplemental Table S5. Predicted TFs of candidate DE-miRNAs.
DOI: 10.6084/m9.figshare.17084054.v1
title: Additional file 4 of Identification of miRNA-mRNA network and immune-related gene signatures in IgA nephropathy by integrated bioinformatics analysis

description: Additional file 4: Supplemental Table S4. Predicted Target genes of candidate DE-miRNAs.
DOI: 10.6084/m9.figshare.14826146
title: Additional file 1 of Mosquito blood-feeding patterns and nesting behavior of American crows, an amplifying host of West Nile virus

description: Additional file 1: American crow nest locations, activity period and fate. Latitude and longitude of each nest location is provided, additional columns provided information on whether the chicks were sampled, the ultimate fate of the nest, and the activity dates.
DOI: 10.6084/m9.figshare.14826149.v1
title: Additional file 2 of Mosquito blood-feeding patterns and nesting behavior of American crows, an amplifying host of West Nile virus

description: Additional file 2: Resting mosquito collection bucket locations. Latitude and longitude of all buckets placed in the field.
DOI: 10.6084/m9.figshare.14826155
title: Additional file 4 of Mosquito blood-feeding patterns and nesting behavior of American crows, an amplifying host of West Nile virus

description: Additional file 4: Complete list of identified blood meal hosts. Data table containing mosquito species, collection date and location, and identified blood meal hosts for all identified blood meals.
DOI: 10.6084/m9.figshare.14826146.v1
title: Additional file 1 of Mosquito blood-feeding patterns and nesting behavior of American crows, an amplifying host of West Nile virus

description: Additional file 1: American crow nest locations, activity period and fate. Latitude and longitude of each nest location is provided, additional columns provided information on whether the chicks were sampled, the ultimate fate of the nest, and the activity dates.
DOI: 10.6084/m9.figshare.14826149
title: Additional file 2 of Mosquito blood-feeding patterns and nesting behavior of American crows, an amplifying host of West Nile virus

description: Additional file 2: Resting mosquito collection bucket locations. Latitude and longitude of all buckets placed in the field.
DOI: 10.6084/m9.figshare.14826155.v1
title: Additional file 4 of Mosquito blood-feeding patterns and nesting behavior of American crows, an amplifying host of West Nile virus

description: Additional file 4: Complete list of identified blood meal hosts. Data table containing mosquito species, collection date and location, and identified blood meal hosts for all identified blood meals.
DOI: 10.6084/m9.figshare.14826158
title: Additional file 5 of Mosquito blood-feeding patterns and nesting behavior of American crows, an amplifying host of West Nile virus

description: Additional file 5: Identified crow and mosquito genotypes. Data table containing a list of all crow genotypes collected from: crow blood samples, collected feathers, and mosquito blood meals.
DOI: 10.6084/m9.figshare.14826158.v1
title: Additional file 5 of Mosquito blood-feeding patterns and nesting behavior of American crows, an amplifying host of West Nile virus

description: Additional file 5: Identified crow and mosquito genotypes. Data table containing a list of all crow genotypes collected from: crow blood samples, collected feathers, and mosquito blood meals.
DOI: 10.6084/m9.figshare.17084114
title: Additional file 1 of Assessing the migratory histories, trophic positions, and conditions of lake sturgeon in the St. Croix and Mississippi Rivers using fin ray microchemistry, stable isotopes, and fatty acid profiles

description: Additional file 1: Table S1. Morphometric data for lake sturgeon from the Mississippi and St. Croix rivers associated with boxplots presented in figure 3.
DOI: 10.6084/m9.figshare.17084114.v1
title: Additional file 1 of Assessing the migratory histories, trophic positions, and conditions of lake sturgeon in the St. Croix and Mississippi Rivers using fin ray microchemistry, stable isotopes, and fatty acid profiles

description: Additional file 1: Table S1. Morphometric data for lake sturgeon from the Mississippi and St. Croix rivers associated with boxplots presented in figure 3.
DOI: 10.6084/m9.figshare.17084120
title: Additional file 2 of Assessing the migratory histories, trophic positions, and conditions of lake sturgeon in the St. Croix and Mississippi Rivers using fin ray microchemistry, stable isotopes, and fatty acid profiles

description: Additional file 2: Table S2. Calibration table for laser ablation inductively-coupled plasma mass spectrometry analyses of cross sections from lake sturgeon pectoral fin rays.
DOI: 10.6084/m9.figshare.17084120.v1
title: Additional file 2 of Assessing the migratory histories, trophic positions, and conditions of lake sturgeon in the St. Croix and Mississippi Rivers using fin ray microchemistry, stable isotopes, and fatty acid profiles

description: Additional file 2: Table S2. Calibration table for laser ablation inductively-coupled plasma mass spectrometry analyses of cross sections from lake sturgeon pectoral fin rays.
DOI: 10.6084/m9.figshare.17084126
title: Additional file 3 of Assessing the migratory histories, trophic positions, and conditions of lake sturgeon in the St. Croix and Mississippi Rivers using fin ray microchemistry, stable isotopes, and fatty acid profiles

description: Additional file 3. Raw data and summary files associated with laser ablation analyses of pectoral fin ray cross sections from lake sturgeon captured in the St. Croix and Mississippi Rivers.
DOI: 10.6084/m9.figshare.17084126.v1
title: Additional file 3 of Assessing the migratory histories, trophic positions, and conditions of lake sturgeon in the St. Croix and Mississippi Rivers using fin ray microchemistry, stable isotopes, and fatty acid profiles

description: Additional file 3. Raw data and summary files associated with laser ablation analyses of pectoral fin ray cross sections from lake sturgeon captured in the St. Croix and Mississippi Rivers.
DOI: 10.6084/m9.figshare.17084132
title: Additional file 4 of Assessing the migratory histories, trophic positions, and conditions of lake sturgeon in the St. Croix and Mississippi Rivers using fin ray microchemistry, stable isotopes, and fatty acid profiles

description: Additional file 4: Table S4. Individual fish identifiers, river and fin ray portion combinations, and values of strontium-to-calcium ratios used in Figure 9 boxplots.
DOI: 10.6084/m9.figshare.17084132.v1
title: Additional file 4 of Assessing the migratory histories, trophic positions, and conditions of lake sturgeon in the St. Croix and Mississippi Rivers using fin ray microchemistry, stable isotopes, and fatty acid profiles

description: Additional file 4: Table S4. Individual fish identifiers, river and fin ray portion combinations, and values of strontium-to-calcium ratios used in Figure 9 boxplots.
DOI: 10.6084/m9.figshare.17084420.v1
title: Additional file 4 of Remarkably coherent population structure for a dominant Antarctic Chlorobium species

description: Additional file 3. Data from Ca. Chlorobium antarcticum 16S rRNA gene variation analysis and comparative analysis of AL, EF and TB MAGs and Cpv-DSM265 genome. Supplementary dataset.
DOI: 10.6084/m9.figshare.17084426.v1
title: Additional file 5 of Remarkably coherent population structure for a dominant Antarctic Chlorobium species

description: Additional file 4. Data for Ca. Chlorobium antarcticum marker gene and protein analyses. Supplementary dataset.
DOI: 10.6084/m9.figshare.17084414.v1
title: Additional file 3 of Remarkably coherent population structure for a dominant Antarctic Chlorobium species

description: Additional file 2. MIMAG data for Ca. Chlorobium antarcticum. Supplementary dataset.
DOI: 10.6084/m9.figshare.17084468.v1
title: Additional file 1 of Two weeks of twice-daily prism adaptation treatment does not improve posture or gait in Parkinson’s disease: a double-blind randomized controlled trial

description: Additional file 1:. Full study data. Tab S1: Patient Centred Outcome Questionnaire for Parkinson’s Disease. Tab S2: Primary outcomes (Berg Balance Scale, Limits of Stability test, Sensory Organization test, Motor Control test). Tab S3: Secondary outcomes, physiotherapy assessed (Timed Up and Go, Functional Gait Assessment, Walk Across test). Tab S4: Secondary outcomes, questionnaire measures (New Freezing of Gait questionnaire, Falls Efficiency Scale, Activities-specific Balance Confidence Scale, Parkinson’s Disease Questionnaire 39). Tab S5: Secondary outcome, Patient Global Impression of Change.
DOI: 10.6084/m9.figshare.17084432.v1
title: Additional file 14 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 14. Table of contents of additional files 1–6.
DOI: 10.6084/m9.figshare.17084441.v1
title: Additional file 16 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 16: Table S1. The relationship between P. chabaudi RNA-seq samples used in this study and their entries in the ENA is described.
DOI: 10.6084/m9.figshare.17084444.v1
title: Additional file 1 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 1. Re-analysed counts of the P. berghei data from the studies listed in Table 2.
DOI: 10.6084/m9.figshare.17084450.v1
title: Additional file 2 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 2. P. berghei pirgene information, TPM values for individual samples and combined across life cycle stages, and summed across sub-families, chromosomes and loci.
DOI: 10.6084/m9.figshare.17084405.v1
title: Additional file 2 of Determination of total protein content in biomedical products by the PDMS-assisted lab-in-a-syringe assay using 3D printed scaffolds removal

description: Additional file 2. LIS_channel.stl. Drawing of the straight channel used for 3D printing. LIS_Tchannel.stl. Drawing of the T-channel used for 3D printing. LIS_reservoir.stl. Drawing of the reservoir used for 3D printing.
DOI: 10.6084/m9.figshare.17084456.v1
title: Additional file 3 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 3. Statistics of P. berghei pirgene set comparisons (QUSage).
DOI: 10.6084/m9.figshare.17084462.v1
title: Additional file 4 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 4. Statistics of P. berghei individual pir genes (DESeq).
DOI: 10.6084/m9.figshare.17084465.v1
title: Additional file 5 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 5. P. c. chabaudi counts across the 24 hour asexual developmental cycle.
DOI: 10.6084/m9.figshare.17084471.v1
title: Additional file 6 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 6. P.c. chabaudi parasitaemia, pir gene information, TPM values, summed across loci, and z-scores.
DOI: 10.6084/m9.figshare.16783438.v2
title: [Dataset]Hisataka Hasegawa et al., 2021,Diameter of human D6 blastocysts reflects genetic homogeneity of trophectoderm components, JARG

description: Patient background, inner diameter, culture time, and PGT-A results for human day 6 blastocysts.
DOI: 10.6084/m9.figshare.17084375.v1
title: Additional file 6 of Genetic basis of orange spot formation in the guppy (Poecilia reticulata)

description: Additional file 6. List of xanthophore and iridophore-related genes. Asterisks indicate genes with known effects on multiple pigment cells (xanthophore, iridophore, and melanophore).
DOI: 10.6084/m9.figshare.17084369.v1
title: Additional file 5 of Genetic basis of orange spot formation in the guppy (Poecilia reticulata)

description: Additional file 5. List of DEGs with enriched GO terms.
DOI: 10.6084/m9.figshare.17084360.v1
title: Additional file 4 of Genetic basis of orange spot formation in the guppy (Poecilia reticulata)

description: Additional file 4. List of DEGs detected by stage comparison. Upregulation and downregulation of genes in stages 2 and 3 compared to stage 1 are presented as positive and negative logFC (logFC stage2, logFC stage3) values, respectively.
DOI: 10.6084/m9.figshare.17084357.v1
title: Additional file 3 of Genetic basis of orange spot formation in the guppy (Poecilia reticulata)

description: Additional file 3. List of differentially expressed genes (DEGs) detected by comparison of the orange and dull skin specimens. Upregulation and downregulation of genes in the orange skin specimens are presented as positive and negative log2-fold change (logFC) values, respectively.
DOI: 10.6084/m9.figshare.17084351.v1
title: Additional file 2 of Genetic basis of orange spot formation in the guppy (Poecilia reticulata)

description: Additional file 2. Results of total RNA amount used for library generation, sequencing, and mapping of each sample.
DOI: 10.6084/m9.figshare.17084471
title: Additional file 6 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 6. P.c. chabaudi parasitaemia, pir gene information, TPM values, summed across loci, and z-scores.
DOI: 10.6084/m9.figshare.17084468
title: Additional file 1 of Two weeks of twice-daily prism adaptation treatment does not improve posture or gait in Parkinson’s disease: a double-blind randomized controlled trial

description: Additional file 1:. Full study data. Tab S1: Patient Centred Outcome Questionnaire for Parkinson’s Disease. Tab S2: Primary outcomes (Berg Balance Scale, Limits of Stability test, Sensory Organization test, Motor Control test). Tab S3: Secondary outcomes, physiotherapy assessed (Timed Up and Go, Functional Gait Assessment, Walk Across test). Tab S4: Secondary outcomes, questionnaire measures (New Freezing of Gait questionnaire, Falls Efficiency Scale, Activities-specific Balance Confidence Scale, Parkinson’s Disease Questionnaire 39). Tab S5: Secondary outcome, Patient Global Impression of Change.
DOI: 10.6084/m9.figshare.17084465
title: Additional file 5 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 5. P. c. chabaudi counts across the 24 hour asexual developmental cycle.
DOI: 10.6084/m9.figshare.17084462
title: Additional file 4 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 4. Statistics of P. berghei individual pir genes (DESeq).
DOI: 10.6084/m9.figshare.17084456
title: Additional file 3 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 3. Statistics of P. berghei pirgene set comparisons (QUSage).
DOI: 10.6084/m9.figshare.17084450
title: Additional file 2 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 2. P. berghei pirgene information, TPM values for individual samples and combined across life cycle stages, and summed across sub-families, chromosomes and loci.
DOI: 10.6084/m9.figshare.17084444
title: Additional file 1 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 1. Re-analysed counts of the P. berghei data from the studies listed in Table 2.
DOI: 10.6084/m9.figshare.17084441
title: Additional file 16 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 16: Table S1. The relationship between P. chabaudi RNA-seq samples used in this study and their entries in the ENA is described.
DOI: 10.6084/m9.figshare.17084432
title: Additional file 14 of Analysis of pir gene expression across the Plasmodium life cycle

description: Additional file 14. Table of contents of additional files 1–6.
DOI: 10.6084/m9.figshare.17084426
title: Additional file 5 of Remarkably coherent population structure for a dominant Antarctic Chlorobium species

description: Additional file 4. Data for Ca. Chlorobium antarcticum marker gene and protein analyses. Supplementary dataset.