cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jbvzr3
title: Occurrence Download

description: A dataset containing 180729 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lobelia Plum. ex L."
 ]
}

 The dataset includes 180729 records from 861 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051825-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.7116527
title: MOESM2 of Plasma lipoproteome in Alzheimerâ s disease: a proof-of-concept study

description: Additional file 2: TableÂ S1. The list of proteins and peptides included in the targeted SRM analysis.
DOI: 10.6084/m9.figshare.19175227.v1
title: A fusion learning method to subgroup analysis of Alzheimer's disease

description: Uncovering the heterogeneity in the disease progression of Alzheimer's is a key factor to disease understanding and treatment development, so that interventions can be tailored to target the subgroups that will benefit most from the treatment, which is an important goal of precision medicine. However, in practice, one top methodological challenge hindering the heterogeneity investigation is that the true subgroup membership of each individual is often unknown. In this article, we aim to identify latent subgroups of individuals who share a common disorder progress over time, to predict latent subgroup memberships, and to estimate and infer the heterogeneous trajectories among the subgroups. To achieve these goals, we apply a concave fusion learning method to conduct subgroup analysis for longitudinal trajectories of the Alzheimer's disease data. The heterogeneous trajectories are represented by subject-specific unknown functions which are approximated by B-splines. The concave fusion method can simultaneously estimate the spline coefficients and merge them together for the subjects belonging to the same subgroup to automatically identify subgroups and recover the heterogeneous trajectories. The resulting estimator of the disease trajectory of each subgroup is supported by an asymptotic distribution. It provides a sound theoretical basis for further conducting statistical inference in subgroup analysis.
DOI: 10.6084/m9.figshare.7116527.v1
title: MOESM2 of Plasma lipoproteome in Alzheimerâ s disease: a proof-of-concept study

description: Additional file 2: TableÂ S1. The list of proteins and peptides included in the targeted SRM analysis.
DOI: 10.6084/m9.figshare.11834895.v1
title: Additional file 20 of Comparative transcriptome analysis of inbred lines and contrasting hybrids reveals overdominance mediate early biomass vigor in hybrid cotton

description: Additional file 20. Enriched KEGG terms of overdominant genes in root of low hybrid-parent triad
DOI: 10.6084/m9.figshare.20222684.v1
title: Additional file 4 of Genome-wide identification of functional enhancers and their potential roles in pig breeding

description: Additional file 4: Table S3. Sequencing statistics of STARR-seq, RNA-seq, ATAC-seq and ChIP-seq libraries.
DOI: 10.6084/m9.figshare.11835240.v1
title: Additional file 5 of Construction of a circRNA-miRNA-mRNA network based on competitive endogenous RNA reveals the function of circRNAs in osteosarcoma

description: Additional file 5: Table S4. A total of 324 potential target genes.
DOI: 10.6084/m9.figshare.20222672.v1
title: Additional file 1 of Genome-wide identification of functional enhancers and their potential roles in pig breeding

description: Additional file 1: Table S1. Enhancers verified using the RT-qPCR method. Primers used to construct the reporter vectors.
DOI: 10.6084/m9.figshare.20222690
title: Additional file 6 of Genome-wide identification of functional enhancers and their potential roles in pig breeding

description: Additional file 6: Table S5. Potential transcription factor binding sites in the enhancers.
DOI: 10.6084/m9.figshare.20222675.v1
title: Additional file 2 of Genome-wide identification of functional enhancers and their potential roles in pig breeding

description: Additional file 2: Table S2. Primers used for RT-qPCR.
DOI: 10.6084/m9.figshare.20222696
title: Additional file 8 of Genome-wide identification of functional enhancers and their potential roles in pig breeding

description: Additional file 8: Table S7. QTL regions overlapping functional enhancers.
DOI: 10.6084/m9.figshare.20222690.v1
title: Additional file 6 of Genome-wide identification of functional enhancers and their potential roles in pig breeding

description: Additional file 6: Table S5. Potential transcription factor binding sites in the enhancers.
DOI: 10.6084/m9.figshare.11834952
title: Additional file 9 of Genome-wide identification of MAPKKK genes and their responses to phytoplasma infection in Chinese jujube (Ziziphus jujuba Mill.)

description: Additional file 9: Table S4. Fold-change values of ZjMAPKKKs in the leaves of witches’ broom, phyllody and apparently normal symptoms.
DOI: 10.6084/m9.figshare.19699813
title: Slab break-off caused by seafloor fabrics: Evidence from North Sumatra

description: 3D Vp model for the manuscript "Slab break-off caused by seafloor fabrics: Evidence from North Sumatra"
DOI: 10.6084/m9.figshare.11835345.v1
title: Additional file 1 of Mutation Spectrum of Stickler Syndrome Type I and Genotype-phenotype Analysis in East Asian Population: a systematic review

description: Additional file 1 : Table S1. Variants of COL2A1 in STL1 patients.
DOI: 10.6084/m9.figshare.19174562
title: Additional file 1 of How do we engage people in testing for COVID-19? A rapid qualitative evaluation of a testing programme in schools, GP surgeries and a university

description: Additional file 1.
DOI: 10.6084/m9.figshare.11834979
title: Additional file 7 of Comparative transcriptome analysis of inbred lines and contrasting hybrids reveals overdominance mediate early biomass vigor in hybrid cotton

description: Additional file 7. Information on DEGs in leaf of low hybrid-parent triad
DOI: 10.6084/m9.figshare.11835351.v1
title: Additional file 2 of Mutation Spectrum of Stickler Syndrome Type I and Genotype-phenotype Analysis in East Asian Population: a systematic review

description: Additional file 2 : Table S2. Clinical characteristics in East Asian patients.
DOI: 10.6084/m9.figshare.7641257
title: Additional file 4: of Regional trade of medicinal plants has facilitated the retention of traditional knowledge: case study in Gilgit-Baltistan Pakistan

description: RFC and UV of species reported from Gojal Hunza. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.11835570
title: Prenatal risk factors for urgent atrial septostomy at birth in fetuses with transposition of the great arteries: a systematic review and meta-analysis

description: <b>Purpose of the article.</b> To explore the role of fetal echocardiography in predicting the risk of urgent balloon atrial septostomy (BAS) at birth in fetuses diagnosed with transposition of the great arteries (TGA). Medline, Embase, and Cochrane databases were searched. The primary aim was to explore the differences in prenatal echocardiographic parameters among fetuses diagnosed with TGA that required urgent BAS within 24 h of birth due to life-threatening cyanosis compared to those who did not require such procedure. Random-effect meta-analyses were used to compute the data. Six studies (292 fetuses) were included. Restrictive appearance of the FO was present in 64.5% (95% CI = 39.8–85.7) of fetuses with TGA requiring BAS at birth compared to 7.9% (95% CI = 2.1–16.8) not requiring such procedure (OR = 71.1; 95% CI = 8.3–608.5, <i>p</i> &lt; .0001). Hypermobile appearance of the atrial septum was present in 39.1% (95% CI = 26.4–56.5) of fetuses requiring BAS at birth compared to 9.8% (95% CI = 1.4–24.3) of those which did (OR 3.6; 95% CI = 1.4–9.0, <i>p</i> = .05). There was no difference in the prevalence of redundant (<i>p</i> = .374) or fixed (<i>p</i> = .051) atrial septum, bidirectional flow in the DA (<i>p</i> = .26) or an abnormal size of the DA (<i>p</i> = .06) in fetuses requiring urgent BAS at birth compared to those which did not. Mean (±SD) size of the right atrium was smaller in the fetuses with TGA undergoing urgent BAS at birth (23.4 ± 6.7) compared to those which did not (29.2 ± 6.2, <i>p</i> = .01). The mean (±SD) ratio between the FO and the aortic valve diameters (1.01 ± 0.41 versus 1.41 ± 0.43, <i>p</i> = .009) and the mean (±SD) ratio between the FO diameter and the septal length (0.36 ± 0.13 versus 0.51 ± 0.14, <i>p</i> = .001) were significantly smaller in fetuses requiring compared to those not undergoing urgent BAS at birth. The diagnostic accuracy of each independent ultrasound marker of the need for urgent BAS showed an overall good specificity but a low sensitivity. Fetal echocardiography prior to birth can stratify the risk of BAS in fetuses with TGA. Further studies are needed to validate these findings and build individualized multiparametric predictive models in order to more accurately identify those fetuses with TGA at a higher risk of urgent BAS after birth.
DOI: 10.6084/m9.figshare.11835357
title: Additional file 2 of Validation of pre-operative risk scores of contrast-induced acute kidney injury in a Chinese cohort

description: Additional file 2: Data.
DOI: 10.6084/m9.figshare.11835357.v1
title: Additional file 2 of Validation of pre-operative risk scores of contrast-induced acute kidney injury in a Chinese cohort

description: Additional file 2: Data.
DOI: 10.6084/m9.figshare.6068435
title: Effect of community based practise of Baduanjin

description: Adults with cardiovascular
diseases in community have lower level of education, most of whom have a low
monthly income; thus, community dwelling cardiovascular disease patients are more
suitable for an economic program to persist their long term management of the
disease. Baduanjin is a traditional Chinese medicine regimen with less physical
and cognitive demand; community based exercise of Baduanjin could help to
increase self-efficacy in patients with cardiovascular diseases, thus better self
management of rehabilitation process.
DOI: 10.6084/m9.figshare.19174562.v1
title: Additional file 1 of How do we engage people in testing for COVID-19? A rapid qualitative evaluation of a testing programme in schools, GP surgeries and a university

description: Additional file 1.
DOI: 10.6084/m9.figshare.19175227
title: A fusion learning method to subgroup analysis of Alzheimer's disease

description: Uncovering the heterogeneity in the disease progression of Alzheimer's is a key factor to disease understanding and treatment development, so that interventions can be tailored to target the subgroups that will benefit most from the treatment, which is an important goal of precision medicine. However, in practice, one top methodological challenge hindering the heterogeneity investigation is that the true subgroup membership of each individual is often unknown. In this article, we aim to identify latent subgroups of individuals who share a common disorder progress over time, to predict latent subgroup memberships, and to estimate and infer the heterogeneous trajectories among the subgroups. To achieve these goals, we apply a concave fusion learning method to conduct subgroup analysis for longitudinal trajectories of the Alzheimer's disease data. The heterogeneous trajectories are represented by subject-specific unknown functions which are approximated by B-splines. The concave fusion method can simultaneously estimate the spline coefficients and merge them together for the subjects belonging to the same subgroup to automatically identify subgroups and recover the heterogeneous trajectories. The resulting estimator of the disease trajectory of each subgroup is supported by an asymptotic distribution. It provides a sound theoretical basis for further conducting statistical inference in subgroup analysis.
DOI: 10.6084/m9.figshare.11835240
title: Additional file 5 of Construction of a circRNA-miRNA-mRNA network based on competitive endogenous RNA reveals the function of circRNAs in osteosarcoma

description: Additional file 5: Table S4. A total of 324 potential target genes.
DOI: 10.6084/m9.figshare.11835477
title: Identification of RNA 3´ ends and termination sites in <i>Haloferax volcanii</i>

description: Archaeal genomes are densely packed; thus, correct transcription termination is an important factor for orchestrated gene expression. A systematic analysis of RNA 3´ termini, to identify transcription termination sites (TTS) using RNAseq data has hitherto only been performed in two archaea, <i>Methanosarcina mazei</i> and <i>Sulfolobus acidocaldarius</i>. In this study, only regions directly downstream of annotated genes were analysed, and thus, only part of the genome had been investigated. Here, we developed a novel algorithm (Internal Enrichment-Peak Calling) that allows an unbiased, genome-wide identification of RNA 3´ termini independent of annotation. In an RNA fraction enriched for primary transcripts by terminator exonuclease (TEX) treatment we identified 1,543 RNA 3´ termini. Approximately half of these were located in intergenic regions, and the remainder were found in coding regions. A strong sequence signature consistent with known termination events at intergenic loci indicates a clear enrichment for native TTS among them. Using these data we determined distinct putative termination motifs for intergenic (a T stretch) and coding regions (AGATC). <i>In vivo</i> reporter gene tests of selected TTS confirmed termination at these sites, which exemplify the different motifs. For several genes, more than one termination site was detected, resulting in transcripts with different lengths of the 3´ untranslated region (3´ UTR).
DOI: 10.6084/m9.figshare.7641212.v1
title: Additional file 11: of Regional trade of medicinal plants has facilitated the retention of traditional knowledge: case study in Gilgit-Baltistan Pakistan

description: List of publications from the region reporting on medicinal plants and their uses. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.7641224.v1
title: Additional file 12: of Regional trade of medicinal plants has facilitated the retention of traditional knowledge: case study in Gilgit-Baltistan Pakistan

description: Ailment categories. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.7641212
title: Additional file 11: of Regional trade of medicinal plants has facilitated the retention of traditional knowledge: case study in Gilgit-Baltistan Pakistan

description: List of publications from the region reporting on medicinal plants and their uses. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.7641236
title: Additional file 1: of Regional trade of medicinal plants has facilitated the retention of traditional knowledge: case study in Gilgit-Baltistan Pakistan

description: Primary data on medicinal plants and their uses collected during the field survey. (XLSX 636Â kb)
DOI: 10.6084/m9.figshare.20222672
title: Additional file 1 of Genome-wide identification of functional enhancers and their potential roles in pig breeding

description: Additional file 1: Table S1. Enhancers verified using the RT-qPCR method. Primers used to construct the reporter vectors.
DOI: 10.6084/m9.figshare.20222675
title: Additional file 2 of Genome-wide identification of functional enhancers and their potential roles in pig breeding

description: Additional file 2: Table S2. Primers used for RT-qPCR.
DOI: 10.6084/m9.figshare.7641236.v1
title: Additional file 1: of Regional trade of medicinal plants has facilitated the retention of traditional knowledge: case study in Gilgit-Baltistan Pakistan

description: Primary data on medicinal plants and their uses collected during the field survey. (XLSX 636Â kb)
DOI: 10.6084/m9.figshare.7641266.v1
title: Additional file 6: of Regional trade of medicinal plants has facilitated the retention of traditional knowledge: case study in Gilgit-Baltistan Pakistan

description: RFC and UV of species reported from Kargha. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.21272856
title: Flexible hyperspectral surface plasmon resonance microscopy

description:   
Dataset of the raw hyperspectral SPR datacube supporting the article titled 'Flexible Hyperspectral Surface Plasmon Resonance Microscopy'.
DOI: 10.6084/m9.figshare.20222693.v1
title: Additional file 7 of Genome-wide identification of functional enhancers and their potential roles in pig breeding

description: Additional file 7: Table S6. Epigenetic mark enrichment analysis of the pig enhancers.
DOI: 10.6084/m9.figshare.7641242.v1
title: Additional file 2: of Regional trade of medicinal plants has facilitated the retention of traditional knowledge: case study in Gilgit-Baltistan Pakistan

description: RFC and UV of species reported from Central Hunza. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.16554285
title: Original Source Date

description: This study aimed to investigate the role of methylation of MALAT1 and miR-146a in the pathogenesis of chronic obstructive
pulmonary disease (COPD).
DOI: 10.6084/m9.figshare.25231802
title: Supplementary Material for: Pulmonary Tumor Thrombotic Microangiopathy in a Patient with Rapid Progressive Triple-Negative Breast Cancer

description: <b><i>Introduction:</i></b> Pulmonary tumor thrombotic microangiopathy (PTTM) is a rare complication of metastatic carcinoma, which occurs in patients with pulmonary arterial hypertension, and is mostly fatal. Circulating tumor cell clusters have been recognized as critical factors during breast cancer progression. <b><i>Case Presentation:</i></b> An 80-year-old woman with triple-negative breast cancer was admitted to our hospital with progressive dyspnea and lower back pain. Breast cancer treatment included mastectomy, neoadjuvant and adjuvant chemotherapy as well as adjuvant radiotherapy, receiving her last cycle of radiotherapy 8 days before death. At admission, D-dimers were strongly elevated and platelets were low. NT-pro-BNP was moderately elevated. A CT scan of the chest did not show pulmonary embolism but revealed interlobular septal thickening, centrilobular consolidation, and distension of the pulmonary arteries. Moreover, new skeletal and most likely lymphatic metastasis was described. Treatment with oxygen and oral glucocorticoids was initiated, assuming radiotherapy-induced pneumonitis. Due to low expression of PD-L1 and her markedly bad performance status, tumor-specific therapy was not possible, and the treatment regimen was changed to best supportive care. The patient died 8 days after admission. Autopsy revealed numerous events consistent with tumor emboli in the pulmonary vessels, suggesting PTTM. <b><i>Conclusion:</i></b> PTTM is a rare and mostly fatal complication in malignant breast cancer. As an early detection is difficult, further investigation is needed. Circulating tumor cluster cells may be one way to detect PTTM early and improve patients’ survival.
DOI: 10.6084/m9.figshare.25231811
title: Supplementary Material for: A Case of Parathyroid Carcinoma in Renal Hyperparathyroidism

description: <b><i>Introduction:</i></b> Parathyroid carcinoma is a rare malignant endocrine tumor that is usually associated with primary hyperparathyroidism. The coexistence of parathyroid carcinoma and renal hyperparathyroidism is a rare phenomenon. Hence, we present a case of parathyroid carcinoma in a patient with tertiary hyperparathyroidism. <b><i>Case Presentation:</i></b> Our patient is a 31-year-old woman with a past medical history of end-stage renal failure (ESRF), on hemodialysis for the past 18 years. She was referred by her nephrologist to the endocrine surgery department for consideration of parathyroidectomy in view of long-standing tertiary hyperparathyroidism complicated by hypercalcemia. Bedside ultrasonography scan (US) of the thyroid revealed three parathyroid glands and a hypoechoic right lower pole thyroid nodule with central calcification. Fine-needle aspiration cytology was performed for the suspected thyroid nodule on the same day, which eventually yielded a follicular lesion of undetermined significance. A right hemithyroidectomy and total parathyroidectomy with deltoid implantation was performed. Intraoperative exploration revealed that the thyroid nodule noted at initial US was found to be the right superior parathyroid gland invading into the right thyroid itself. The right superior parathyroid gland was excised en bloc with the right hemithyroidectomy. Post-operatively, the patient was hypocalcemic but was discharged well on post-operative day 5. Histopathological diagnosis of the right hemithyroidectomy specimen containing the right superior parathyroid gland was consistent with that of parathyroid carcinoma. <b><i>Conclusion:</i></b> Parathyroid carcinoma is a rare entity that is difficult to diagnose. In patients with ESRF, the presence of concurrent tertiary hyperparathyroidism makes this even more challenging.
DOI: 10.25447/sit.23515425
title: Research data for "Singapore Student Nurses’ Perception of Professional Identity data"

description: This is the research data for the study titled "Singapore Student Nurses’ Perception of Professional Identity data".Nurses' professional identity is important for their career orientation and clinical practice. This study explored Singaporean student nurses' perceptions of professional identity and its impact on their practice. An exploratory descriptive qualitative research study was carried out with a purposive sampling method. Data was collected using participants’ written expression and analysed using thematic analysis.
DOI: 10.25447/sit.23515425.v1
title: Research data for "Singapore Student Nurses’ Perception of Professional Identity data"

description: This is the research data for the study titled "Singapore Student Nurses’ Perception of Professional Identity data".Nurses' professional identity is important for their career orientation and clinical practice. This study explored Singaporean student nurses' perceptions of professional identity and its impact on their practice. An exploratory descriptive qualitative research study was carried out with a purposive sampling method. Data was collected using participants’ written expression and analysed using thematic analysis.