cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11393673
title: MOESM2 of Prediction and clinical utility of a contralateral breast cancer risk model

description: Additional file 2 Figure S1. Graphical assessment of non-linear relationship of age with contralateral breast cancer risk. Figure S2. Visual assessment of calibration through calibration plots in the internal-external cross-validation at 5 years for the contralateral breast cancer risk model with BRCA mutation information. Figure S3. Visual assessment of calibration through calibration plots in the internal-external cross-validation at 10 years for the contralateral breast cancer risk model with BRCA mutation information. Figure S4. Decision curve analysis at 5 years for the contralateral breast cancer risk model including BRCA1/2 mutation information. Figure S5. Results of the leave-one-study-out cross-validation for the contralateral breast cancer risk model at 5 and 10 years without BRCA mutation information. Figure S6. Visual assessment of calibration through calibration plots in the internal-external cross-validation at 5 years for the contralateral breast cancer risk model without BRCA mutation information. Figure S7. Visual assessment of calibration through calibration plots in the internal-external cross-validation at 10 years for the contralateral breast cancer risk model without BRCA mutation information. Figure S8. Density distribution of 10-year predicted absolute risk in patients with no family history and patients with a family history. Figure S9. Decision curve analysis at 5 years for the contralateral breast cancer risk model without BRCA mutation information. Figure S10. Decision curve analysis at 10 years for the contralateral breast cancer risk model without BRCA mutation information. Figure S11. Assessment of inclusion of information of contralateral preventive mastectomy (CPM).
DOI: 10.6084/m9.figshare.13491239.v1
title: Characterization of viruses and viroids in <i>Vitis vinifera</i> ‘Kyoho’ in Hangzhou China by small RNA deep sequencing and molecular detection

description: High throughput sequencing of small RNA and RT-PCR revealed that <i>Vitis vinifera</i> ‘Kyoho’, the main grapevine cultivar in Hangzhou, China, was co-infected with at least three viruses, namely grapevine leafroll-associated virus 3 (GLRaV-3), grapevine geminivirus A (GGVA), and grapevine fleck virus (GFkV), and five viroids, namely hop stunt viroid (HSVd), citrus viroid II (CVd-II), grapevine yellow speckle viroid 1 (GYSVd-1), grapevine yellow speckle viroid 2 (GYSVd-2), and citrus cachexia viroid (CCaVd). Additionally, two new isolates of citrus cachexia viroid, i. e. CCaVd-Kyoho-1 and CCaVd-Kyoho-2, were co-identified. These two isolates consist of 296 and 300 full nucleotides, respectively, with 2.7%–5.0% and 4.6%–6.9% variations individually compared to other CCaVd isolates, and 5.8%–6.1% variations to CVd-II and HSVd in the NCBI database. Point mutations in the form of transitions and transversions, A/T deletions, and A/C insertions were identified. These mutations were mainly distributed in the pathogenic and variation regions. Phylogenetic analysis showed that the two local CCaVd isolates are located in the new evolution clade and could be new members of HSVd in the family <i>Pospiviroidae</i> existing in the grapevine cultivar ‘Kyoho’.
DOI: 10.6084/m9.figshare.11393826.v1
title: MOESM4 of A KHDC3L mutation resulting in recurrent hydatidiform mole causes genome-wide DNA methylation loss in oocytes and persistent imprinting defects post-fertilisation

description: Additional file 4 : Table S3. Summary of statistical analysis in Figures and Supplementary Figures; .xls, 24â€‰KB.
DOI: 10.6084/m9.figshare.13491012
title: A genome-wide survey of interaction between rice and <i>Magnaporthe oryzae</i> via microarray analysis

description: The main aim of the work is to study the regulation of gene expression in the interaction between rice and <i>Magnaporthe oryzae</i> by gene chip technology. In this study, we mainly focused on changes of gene expression at 24, 48, and 72 hours post-inoculation (hpi), through which we could conduct a more comprehensive analysis of rice blast-related genes in the process of infection. The results showed that the experimental groups contained 460, 1227, and 3937 significant differentially expressed genes at 24, 48, and 72 hpi, respectively. Furthermore, 115 significantly differentially expressed genes were identified in response to rice blast infection at all three time points. By annotating these 115 genes, they were divided into three categories: metabolic pathways, proteins or enzymes, and organelle components. As expected, many of these genes were known rice blast-related genes; however, we discovered new genes with high fold changes. Most of them encoded conserved hypothetical proteins, and some were hypothetically conserved genes. Our study may contribute to finding new resistance genes and understanding the mechanism of rice blast development.
DOI: 10.6084/m9.figshare.17156969.v1
title: Additional file 11 of Transcriptomic and metabolomic changes triggered by Macrosiphum rosivorum in rose (Rosa longicuspis)

description: Additional file 11: Table S7. KEGG annotation of differentially expressed metabolites from CK-vs.-A5 d.
DOI: 10.6084/m9.figshare.13491018.v1
title: Long non-coding RNA (LncRNA) MRPL23-AS1 promotes tumor progression and carcinogenesis in osteosarcoma by activating Wnt/β-catenin signaling via inhibiting microRNA miR-30b and upregulating myosin heavy chain 9 (MYH9)

description: Long non-coding RNA (LncRNA) contributes to the occurrence and development of osteosarcoma (OS), although the underlying mechanism is not clear. In the present study, we showed that lncRNA MRPL23-AS1 was remarkably increased in OS tissues and cell lines. Stable knockdown of MRPL23-AS1 evidently attenuated cell viability and invasive ability, meanwhile inhibited <i>in vivo</i> tumor growth and dissemination. In terms of mechanism, luciferase reporter, RNA pull-down and fluorescence in situ hybridization (FISH) assays showed that MRPL23-AS1 competitively interacted with miR-30b, increasing myosin heavy chain 9 (MYH9) expression, a trans- activator of β-catenin, resulting in the activation of Wnt/β-catenin pathway, thereby promoting OS tumorigenesis and metastasis. Importantly, high MRPL23-AS1 was positively correlated with MYH9, while conversely correlated with miR-30b, suggesting that the regulatory axis of MRPL23-AS1/miR-30b/MYH9 does exist in OS. Clinically, OS patients with high MRPL23-AS1 had larger tumor size, higher stage and easier metastasis than those with low MRPL23-AS1, moreover, MRPL23-AS1 was identified as an adverse prognostic factor for OS survival. In conclusion, our results show that MRPL23-AS1 is a key oncogenic lncRNA in OS, targeting of MRPL23-AS1 may be a promising treatment for OS patients.
DOI: 10.25549/chs-m8489
title: Exterior view of an old adobe store at New Almaden, Southwest of San Jose, 1938

description: Photograph of an exterior view of an old adobe store at New Almaden, Southwest of San Jose, 1938. The lightly-colored  Almaden general mercantile store is visible at center with a damaged shingled roof and two stripes that extend the large width of the store's front. A tree stands outside the doors of the store along the edge of the street that lies in the foreground. To the right of the tree, further down the street, a man can be seen using the gas pumps in front of the store for a parked automobile to the left of him. Thick woods blanket the backdrop of the old store.
DOI: 10.25549/chs-m18996
title: View of a truck garden and ranch buildings on Buri-Buri Ranch, south of San Francisco, ca.1900

description: Photograph of a view of a truck garden and ranch buildings on Buri-Buri Ranch, south of San Francisco, ca.1900. In the foreground, a tilled field can be seen, with a dirt road running along the right side. The road leads to a complex of wooden buildings. Mountains are visible in the background. Compares to CHS-12168. The Buri-Buri was the first rancho on the peninsula south of San Francisco.
DOI: 10.25549/chs-m17226
title: View of redwood stable and water tower near San Mateo, 1937

description: Photograph of a view of redwood stable and water tower near San Mateo, 1937. At center, a compact, multi-sectioned wooden building is visible, and open tower capping its apex. Two trees and a toppled bench at left stand in front of it.
DOI: 10.25549/chs-m9935
title: Exterior view of the Gaspar Orena Adobe House at Ortega Hill, Montecito, 1936

description: Photograph of an exterior view of the Gaspar Orena Adobe House at Ortega Hill, Montecito, 1936. A two-story building is visible at center with a sloped roof. Stairs lead to the front door, while three rectangular windows are visible on the first level. A covered balcony can be seen on the second story, along with one door and two windows. Plants and trees are visible in the right foreground, while a tree can be seen in the left background.
DOI: 10.25549/chs-m9931
title: Exterior view of the Arallanes (Arrelanes?) house, the oldest adobe in Santa Barbara, later used as a Community Welfare Center, ca.1936

description: Photograph of an exterior view of the Arallanes (Arrelanes?) house, the oldest adobe in Santa Barbara, later used as a Community Welfare Center, ca.1936. A long one-story building can be seen at center obscured at left and right by plants and trees. A few stairs lead to a covered patio, while windows and a door can be seen. A dirt road runs across the foreground, while desert plants can be seen in the extreme foreground.
DOI: 10.25549/chs-m21364
title: Mission Dam in Mission Canyon near the Blakesly Botanical Gardens, Santa Barbara, [s.d.]

description: Photograph of the old Mission Dam in Mission Canyon near the Blakesly Botanical Gardens, at the Santa Barbara Mission, [s.d.]. What appears to be a solid gateway stands between two tall stone walls, at right. The area is completely surrounded by an assortment of foliage.
DOI: 10.25549/chs-m9910
title: Exterior view of an adobe in Santa Barbara remodeled for use as the art studio of J. Depaco, 1936

description: Photograph of an exterior view of an adobe in Santa Barbara remodeled for use as the art studio of J. Depaco, 1936. A one story building with a sloped roof can be seen at center. Two stairs lead to the front door at right, while a sign reading "Studio Art and Painting. J. Depaco and Decoratino" can be seen to the left of the door. Three rectangular windows are visible to the left of the sign, while a second sign can be seen hanging from the center window. A utility pole is visible at left, while a sidewalk and paved road run in front of the building. A tall building can be seen to the left of the adobe, while utility lines are visible in the background.
DOI: 10.25549/chs-m1595
title: Mission style residence of John Parkinson, architect, at Sixth Street and Saint Paul Street, ca.1900-1910

description: Photograph of mission style residence of John Parkinson, architect, at Sixth Street and Saint Paul Street, ca.1900-1910. The two-story house is built on a hill. The roof appears completely flat and slightly hangs over the edges of the buildings. Stone steps curve along an embankment supporting the front lawn up to the house. John Parkinson designed the Spanish revival house, as well as Bullocks Wilshire, Los Angeles City Hall, The Coliseum, and Union Station.
DOI: 10.25549/chs-m7563
title: Exterior view of the south facade of the Casa Carillo adobe, birthplace of Isabel Larkin, Santa Barbara, 1936

description: Photograph of an exterior view of the south facade of the Casa Carillo adobe, birthplace of Isabel Larkin, Santa Barbara, 1936. A one story building with a sloped, shingled roof can be seen at center. Many plants and trees can be seen growing in front of the covered patio, while stairs can be seen leading up to the patio. A road is visible across the foreground. A taller building can be seen at left, while the roof of a third building can be seen in the background. Photoprint reads: "Isabel Larkin, the daughter of Consul Larkin, the first American child born in California, was born in this house. First City Council of Santa Barbara under American rule met here".
DOI: 10.25549/chs-m9911
title: Exterior view of an adobe on De la Guerra Street across from City Hall in Santa Barbara, now the real estate and insurance office of S.E. Kramer, ca.1935

description: Photograph of an exterior view of an adobe on De la Guerra Street across from City Hall in Santa Barbara, now the real estate and insurance office of S.E. Kramer, ca.1935. The one story building has a sloped, shingled roof and a covered walkway in front. Two doorways and a few windows can be seen, and stairs are partially visible at right. A grass lawn, low hedge, and road can be seen in the foreground in front of the building. A second building can be seen at left.
DOI: 10.25549/chs-m10125
title: Adobe buildings on the east side of de la Guerra Street opposite City Hall, Santa Barbara, 1936

description: Photograph of adobe buildings on the east side of de la Guerra Street opposite City Hall, Santa Barbara, 1936. A paved road can be seen running across the foreground and from the foreground towards the background left of center. Adobe style buildings line both sides of the street.  Some have archways or covered walkways, while all have sloped, shingled roofs. "Curios Antiques Gifts" can be seen on the side of a building at right. Utility lines are visible, while mountains can be seen in the background.
DOI: 10.25549/chs-m7559
title: Exterior view of El Cuartel, the oldest adobe building in Santa Barbara, ca.1940

description: Photograph of an exterior view of El Cuartel, the oldest adobe building in Santa Barbara, ca.1940. The north facade of the building can be seen at right, while an arched gate can be seen at center. Vines can be seen growing over the wall which runs from the gate to the left, while a late 1930's automobile can be seen parked on the street at left. Trees and power lines are visible in the background. Originally a guard house at Royal Presidio, later home of the Valenzuela family. Caption on back, "Santa Barbara - Adobe home said to have been home of one of the officers of the Presidio." An earlier record identifies the home as the "oldest remaining building at Santa Barbara Presidio".
DOI: 10.25549/chs-m9905
title: Monument erected by the Daughters of the American Revolution, Santa Barbara, 1928

description: Photograph of a monument erected by the Daughters of the American Revolution, Santa Barbara, 1928. A plaque can be seen affixed to a large boulder at center. Trees are visible in the background. The monument marks the southeasterly boundary of the Presidio at Santa Barbara, describing the activities of Governor Felipe de Neve, Captain Jose Francisco Ortega, and Fray Junipero Serra.; Plaque reads: "This tablet marks the southeasterly boundary of the Santa Barbara Presidio founded in 1782 by Governor Felipe de Neve and Captain Jose Francisco Ortega in command of fifty soldiers accompanied by Fray Junipero Serra who dedicated the site. Santa Barbara Chapter, Daughters of the American Revolution, 1926".
DOI: 10.25549/chs-m9912
title: Exterior view of the Ortega adobe in Santa Barbara, facing the Plaza, ca.1935

description: Photograph of an exterior view of the Ortega adobe in Santa Barbara, facing the Plaza, ca.1935. A one-story building with a large sloped roof can be seen at center with a covered patio. At least four windows are visible, and plants can be seen in front of the patio. A second building can be seen at right, while utility lines are visible in the background. A grass front lawn can be seen in the foreground.
DOI: 10.25549/chs-m9986
title: Exterior view of a building on the site of the old Aguirre house on De la Guerra Street, Santa Barbara, ca.1935

description: Photograph of an exterior view of a building on the site of the old Aguirre house on De la Guerra Street, Santa Barbara, ca.1935. A two-story building with a balcony extending the length of the second story can be seen at center. A sign reading "Sale" can be seen in one of the six windows at ground level, while three doors can be seen. Multiple doors and windows are visible on the second story as well. A tall pruned bush forms a wall at right, while a sidewalk and paved road can be seen in the foreground.
DOI: 10.25549/chs-m8916
title: Exterior view of the Jose Lopez Adobe in Old Town, San Diego, ca.1934

description: Photograph of an exterior view of the Jose Lopez Adobe in Old Town, San Diego, ca.1934. A long, one story adobe is pictured at center, with various plants obscuring the porch in front. The roof appears umkempt, missing shingles in several spots, while an addition to the the building is visible to the right.
DOI: 10.25549/chs-m8779
title: Exterior view of the "restored" adobe house of Josefa Carrillo, ca.1930

description: Photograph of an exterior view of the "restored" adobe house of Josefa Carrillo, ca.1930. A squat, one-story adobe building is shown, with large growths of creeping vines hanging from the terracotta tiles of the roof in front. Placards can be seen flanking the door to either side, the right which reads "Presidio Hills Golf Club", the other of which is illegible. To the left of the building, a wooden gate can be seen, possibly for automobiles. Letters are painted on it which read "AC -- AC SLWE". Several chairs and benches can be seen arranged along the wrap-around patio. A residential area can be seen faintly in the right distance.
DOI: 10.25549/chs-m14936
title: Close-up of a chacguala lizard, ca.1920

description: Photograph of close-up of a chacguala (pronounced chuck-a-walla) lizard, ca.1920. It is facing left with its head in the air. On a neutral background.
DOI: 10.25549/chs-m7131
title: View of the Serra cross on hill back of San Buenaventura Mission, ca.1920

description: Photograph of a view of the Serra cross from a hill overlooking Ventura, ca.1920. A cross stands in the center on a platform at the end of a sidewalk and the edge of a hillside. The sidewalk starts in the left foreground and curves out to the center where two short steps lead up to the oval shaped platform made with stone walls. A pier can be seen in the left background while a large body of water is visible behind the valley below.
DOI: 10.25549/chs-m8723
title: Junipero Serra Memorial Cross on Presidio Hill in San Diego, ca.1880

description: Photograph of the Junipero Serra Memorial Cross on Presidio Hill in San Diego, ca.1880. At center a cross made from small rocks can be seen on top of a concrete block with a plaque on its front. The memorial is enclosed by a low wall. Plants are visible in the foreground, while trees can be seen to the left and right. Open land dotted with several homes is visible in the background. Photoprint reads: "Made from fragments of tile from the Presidio building".
DOI: 10.25549/chs-m14937
title: Throngs of people crowd the streets to welcome the arrival of President William McKinley for La Fiesta de Los Angeles, 1901

description: Photograph of throngs of people crowding the streets (east Fifth Street?) to welcome the arrival of President William McKinley for La Fiesta de Los Angeles, 1901. An American flag hangs prominently from a line strung across the street. Two horse-drawn carriages are driving down the middle of the street. Some people are perched on roofs of adjacent buildings. Legible signs include: "Atlas Mills, wholesale dealers in all kinds of grain, rolled barley, wheat, oats, cracked corn & c., Pride of the Valley Flour our specialty, Red Texas Oats", ..."e & Zob[...] [...]er [...] La"..., ..."City [...]hing"..., ..."May 6"..., "We sell Bur's", ..."Martin", ..."eld-Tea syrup", "Dr. Abbot makes the blind see, the deaf hear"... "Catar"..., "La Fiesta[...] de flores"..., ..."150 S. Main".
DOI: 10.25549/chs-m5891
title: Exterior view of Rancho Los Cerritos ranch house in Long Beach, ca.1900

description: Photograph of an exterior view of the Rancho Los Cerritos ranch house, ca.1900. The dilapidated two-story building, built in 1844 by John Temple, is pictured fromt he south end at center. The two story dwelling has a covered porch extending along one side at both levels. A few trees are in the yard. A one story brick or adobe wing is visible as is another smaller building in the right background.
DOI: 10.25549/chs-m799
title: Flower garden of the N. Boufilios residence on Spring Street near Ninth Street, Los Angeles, ca.1895

description: Photograph of a little girl standing beside the blooming Echinopsis Mulprid cactus in the garden at the residence of N. Boufilios on Spring Street near Ninth Street, ca.1895. The house is barely visible in the background.
DOI: 10.25549/chs-m4904
title: "Going to the Marrienda", a drawing of couples on horseback, from Walter Colton's "Two Years in California", 1850-1859

description: Photograph of "Going to the Marrienda", a drawing of couples on horseback, from Walter Colton's "Two Years In California", 1850-1859. A man with a dark suit, large hat, and long hair sits towards the rear of the front horse at center with a lady in a dark dress and lightly-colored shirt sitting in front of him. The darkly-colored horse in an intricately-embroidered saddle has all four legs off the ground as does the horse of the second couple on the right. The first couple rides next to palm trees which stand above a row of dark bushes and rocks on the left while the several other couples are faintly drawn against the pale mountainside on the right.; Photoprint reads "'Going to the merrienda (picnic)', illustration from Walter Cotton's 'Two Years in California' published in Philadelphia in 1853".
DOI: 10.25549/chs-m13954
title: Young man pushing a wheelbarrow taxi, China, ca.1900

description: Photograph of a young man pushing a wheelbarrow taxi, China, ca.1900. The young man is pictured at center, dressed in billowing pants, and a fitted long-sleeved shirt. A long braid of hair extends from the back of his cap, and he is turning his head to look at the viewer, although his body faces away. He grips the handles of the cart, which is comprised of a large, central wheel which juts up through the palette. Loose rope hangs from the guard rails to either side of the cart. In the background, a tall stone building gives way at right to a more ornate entrance, whose second level seems to be made of thatched grass or wicker. Two pagoda-like columns decorated either side of the door. Just to the right of this, a second young man can be seen shying away from the camera, his head bowed.
DOI: 10.25549/chs-m19485
title: Vendors carrying straw sandals in China, ca.1900

description: Photograph of vendors carrying straw sandals in China, ca.1900. The men, pictured at center, are dressed in pants and tunics and are facing each other. Each man has a board slung over his shoulder from which hang the straw sandals, although the man farthest back has lashed his sandals to his board, rather than let them dangle. In the background, a steam-ship can be seen at port, while to the left, a third man pushes a cart loaded with a filled wicker basket.
DOI: 10.25549/chs-m30401
title: Dock worker "Coolie" loading a whole boar onto a barge, China, ca.1900

description: Photograph of a dock worker "Coolie" loading a whole boar onto a barge, China, ca.1900. The worker is shown at center, holding a fatted boar along the curve of his lower back as though it were a sack. He is following in the trail of a second man, who makes his way closer to the barge in the background and does not carry anything apparent. Both men are wearing cloth boots, chinos and tunics. A third man stands in the background on a plank to the left.
DOI: 10.25549/chs-m30398
title: Four men dragging a cart loaded with logs, China, [s.d.]

description: Photograph of four men dragging a cart loaded with logs, China, [s.d.]. Four men struggle pulling taut lengths of rope attached to a cart full of long timber, while several others supervise behind the cart. In the background, two wall-like two-story brick buildings can be seen, just behind the street on which the men can be seen. Other pedestrians are also evident. The men wear tunics, cloth boots, and baggy pants. An earlier record reads "Men are cheaper than horses".