cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11316335
title: Supplementary Material for: <b><i>Staphylococcus aureus</i></b> Carriage Status in Patients with Hidradenitis Suppurativa: An Observational Cohort Study in a Tertiary Referral Hospital in Athens, Greece

description: <b><i>Background:</i></b> Hidradenitis suppurativa (HS) is a chronic, recurrent, auto-inflammatory disease that affects the pilosebaceous unit in apocrine gland-bearing areas. Bacteria are thought to play a role in the development and progression of disease. In addition, antibiotics are frequently used as first-line management for HS. We sought to determine the carriage status of <i>Staphylococcus aureus</i> and its resistance to antibiotics among patients with HS in a tertiary referral hospital in Athens, Greece. <b><i>Methods:</i></b> In this observational cohort study, 68 consecutive patients attending the HS clinic of “Attikon” General University Hospital in Athens, Greece, during a 9-month period were enrolled. All patients had not received any antibiotic therapy for any reason during the previous 3 months before enrollment. Nasal and oropharyngeal sampling<i></i>were obtained, and specimens were tested for the presence of <i>S. aureus.</i>Antibiotic susceptibility testing was performed using the VITEK 2 system. Standard statistical tests, descriptive statistics tests, and χ<sup>2</sup> and Pearson correlation tests were performed, using IBM SPSS Statistics 25<i>.</i>The level of significance was set at a <i>p</i>value &lt;0.05. <b><i>Results:</i></b> Sixty-eight patients with HS were studied. There were 44 females (64.7%) and 24 males (35.3%). The mean age was 36.63 ± 13.0 (IQR = 21), and the mean age at onset of disease was 23.90 ± 11.53 (IQR = 14). The mean duration of disease was 12.74 ± 10.20 years (IQR = 15). Fifteen (22.1%) of the patients were Hurley stage I, 22 (32.4%) were Hurley stage II, and 31 (45.6%) were Hurley stage III. <i>S. aureus</i> carriage was detected in 17 patients (25%). Six of them (35.3%) had MRSA strains. There was an increased prevalence of <i>S. aureus</i> colonization (<i>p</i> = 0.058) and MRSA (<i>p</i> = 0.101) in Hurley stage III patients, but this result was not statistically significant. <b><i>Conclusions:</i></b> We found a 25% prevalence of <i>S. aureus</i> colonization (17/68 patients) and a 35.3% prevalence of MRSA (6/17) among our HS patients. There was an increased prevalence of <i>S. aureus</i>and MRSA positivity in HS patients with Hurley stage III. Further studies are needed to clarify the possible clinical significance of <i>S. aureus</i> carriage in the disease development and progression as well as in the treatment outcome.
DOI: 10.6084/m9.figshare.11316284
title: AJP_Supplementary_data

description: Sphingosine-1-phosphate as a key player of insulin secretion induced by high density lipoprotein treatment_supplementary_data
DOI: 10.6084/m9.figshare.11316323.v1
title: Identification of Sec23ip, part of 14-3-3γ protein network, as a regulator of acute steroidogenesis in MA-10 Leydig cells

description: <b>Supplemental Figure 1</b>. Image obtained from protein atlas databases. Sections of a testes obtained from a patient were stained with Sec23ip antibody. Patient data and cell types with Sec23ip expression are indicated. <br> <b>Supplemental Table 1</b>. A list of proteins from the 14-3-3γ interactome in cAMP-treated MA-10 cells at times 0, 30, 60 and 120. The proteins are listed based on progressive increase in interactions with 14-3-3γ. <b>Supplemental Table 2</b>. A selected list of 14-3-3γ interactome containing proteins that showed consistent interactions at all time points across n= 3. <br> <b>Supplemental Table 3</b>. Relative gene expression for Sec23ip in steroidogenic tissues in human and mice. This data was obtained from biogps database using the probeset 209175-at for human and probeset 1433627-at for mice. <b>Supplemental Table 4</b>. The sequences of 3 siRNA used for Sec23ip knock down. <b></b>
DOI: 10.6084/m9.figshare.11316284.v1
title: AJP_Supplementary_data

description: Sphingosine-1-phosphate as a key player of insulin secretion induced by high density lipoprotein treatment_supplementary_data
DOI: 10.6084/m9.figshare.11316269
title: PHENOTYPIC DIVERSITY OF METHYLOBACTERIUM ASSOCIATED WITH RICE LANDRACES IN NORTHEAST INDIA

description: We used this dataset to analyze the pattern of rice associated Methylobacterium from North-East India.
DOI: 10.6084/m9.figshare.11316269.v1
title: PHENOTYPIC DIVERSITY OF METHYLOBACTERIUM ASSOCIATED WITH RICE LANDRACES IN NORTHEAST INDIA

description: We used this dataset to analyze the pattern of rice associated Methylobacterium from North-East India.
DOI: 10.6084/m9.figshare.11316266.v1
title: Tables 1-9

description: Table 1 Petrological descriptionTable 2 Major-element (wt.%) concentrations of Site 1431, Site 1433, Site 1434 volcanic rocks from the South China SeaTable 3 Trace-element (ppm) concentrations of Site 1431, Site 1433, Site 1434 volcanic rocks from the South China SeaTable 4 Major-element (wt.%) concentrations of Site 1434 volcanic glass from the South China SeaTable 5 Trace-element (ppm) concentrations of Site 1434 volcanic glass from the South China SeaTable 6 Major-element (wt.%) concentrations for the olivine-spinel pairs in the Site 1431 volcanic rocks from the South China SeaTable 7 Major-element (wt.%) concentrations of olivine for Site 1431 and Site 1433 volcanic rocks from the South China SeaTable 8 Major-element (wt.%) concentrations of pyroxene for Site 1431 and Site 1433 volcanic rocks from the South China SeaTable 9 Major-element (wt.%) concentrations of feldspar for Site 1433 volcanic rocks from the South China Sea<br>
DOI: 10.6084/m9.figshare.11316230
title: Effects of Xiao-Ban-Xia-Tang formula on cisplatin and 1-phenylbiguanide hydrochloride induced acute and delayed emesis and gut microbiota in the pica model of rats

description: Two rat models of cisplatin and 1-phenylbiguanide hydrochloride induced pica were established. The amount of kaolin intake was observed, and the effects of Xiao-Ban-Xia-Tang formula and ondansetron on the gut microbiota were studied by 16S rDNA gene analysis.<br>
DOI: 10.6084/m9.figshare.11316212
title: SCA17 mice RNA-seq on CB,STR and PFC.xlsx

description: RNA sequencing was performed on the cerebellum, prefrontal cortex and striatum of 3-month-old germline SCA17 knock-in mice and age matched wild-type mice.
DOI: 10.6084/m9.figshare.11316230.v1
title: Effects of Xiao-Ban-Xia-Tang formula on cisplatin and 1-phenylbiguanide hydrochloride induced acute and delayed emesis and gut microbiota in the pica model of rats

description: Two rat models of cisplatin and 1-phenylbiguanide hydrochloride induced pica were established. The amount of kaolin intake was observed, and the effects of Xiao-Ban-Xia-Tang formula and ondansetron on the gut microbiota were studied by 16S rDNA gene analysis.<br>
DOI: 10.6084/m9.figshare.11316212.v3
title: SCA17 mice RNA-seq on CB,STR and PFC.xlsx

description: RNA sequencing was performed on the cerebellum, prefrontal cortex and striatum of 3-month-old germline SCA17 knock-in mice and age matched wild-type mice.
DOI: 10.6084/m9.figshare.11316212.v2
title: SCA17 mice RNA-seq on CB,STR and PFC.xlsx

description: RNA sequencing was performed on the cerebellum, prefrontal cortex and striatum of 3-month-old germline SCA17 knock-in mice and age matched wild-type mice.
DOI: 10.6084/m9.figshare.11316038.v1
title: Guy & Guy (2015) Study 3 data, Human Givens Rewind treatment for posttraumatic stress and PTSD

description: The purpose of this pilot study was to examine the clinical effectiveness of a single Rewind session to treat posttraumatic stress and PTSD in a clinical setting. All clients who were referred to the PTSD treatment clinic between 2009 and 2014 were included and accepted for treatment, with no exclusion criteria. All clients who were seen and consented to participate in this study prior to starting treatment. The Griffin and Tyrrell (2001) Rewind protocol for treating trauma was used. This treatment session was part of the HG therapy that they received. The Impact of Events Scale - Extended Version (IES-E) was administered to clients before the Rewind treatment session and in the follow-up session 1-2 weeks after treatment.
DOI: 10.6084/m9.figshare.11316041.v1
title: Timmins (2015) Study 1 data, Human Givens Rewind treatment for posttrauamtic stress in a police force

description: The purpose of this pilot study was to investigate the effectiveness of the Rewind treatment for post traumatic stress in a police force setting. Officers and staff int he police force were referred for treatment by the Occupational Health advisors, and all those who were referred were treated with no exclusion criteria. Any staff with a possible diagnosis for PTSD were first seen by the Forces Medical Advisor for a diagnosis before making a referral for Rewind treatment. All the clients treated using Rewind in a specific police force between 2009 and 2013 ere included and gave informed consent to participate in this study prior to starting treatment. All those treated by the service completed the CORE-OM before and after treatment. Those with a diagnosis of PTSD or PTS were also given the IES-R before and after treatment. The Griffin and Tyrrell (2004) HG treatment was used with the Griffin and Tyrrell (2001) protocol for the Rewind technique.
DOI: 10.6084/m9.figshare.11316029
title: Links between soil microbial communities, functioning and plant nutrition under altered rainfall in Australian grassland

description: Dataset of "Links between soil microbial communities, functioning and plant nutrition under altered rainfall in Australian grassland". Ecological Monographs.
DOI: 10.6084/m9.figshare.11316035.v1
title: Barr (2015) Study 4, Human Givens Rewind treatment for posttrauamtic stress

description: The purpose was to evaluate the effectiveness of HG therapy for treating posttraumatic stress in a clinical setting. All clients who were referred to a private practice were treated with Rewind, February 2010 - February 2015, were eligible for inclusion in this study. Of the 113 clients treated during this period, 38 were treated with HG therapy without the Rewind and 75 were treated with HG therapy including Rewind. There were no exclusion criteria. The CORE-10 (study 4a) and the GAD-7 and PHQ-9 (study 4b) were administered at the assessment and at every subsequent treatment session. The questionnaires used in this practice changed during the data collection period to reflect changes in practice in the local area. The Griffin and Tyrrell (2001) Rewind protocol was used.
DOI: 10.6084/m9.figshare.11316032.v1
title: Andrews (2015) study 2, Human Givens Rewind treatment of posttrauamtic stress in veterans

description: The purpose of this preliminary study was to investigate the effectiveness of Human Givens (HG) Rewind treatment for war veterans suffering from post traumatic stress. All war veterans who self-referred between 24 April 2014 and 14 January, 2015 for treatment with PTSD Resolution Ltd, a charity for treating veterans. The charity then referred the veterans to fully qualified and registered HG therapists. The charity registered clients online on the Pragmatic Research Tracker when the referral was made. Clients completed the Impact of Events Scale - Extended Version (IES-E) and Clinical Outcomes in Routine Evaluation (CORE-10). HG therapy included the Griffin & Tyrrell (2001) Rewind treatment protocol.
DOI: 10.6084/m9.figshare.11316032.v2
title: Andrews (2020) Study 2, Human Givens Rewind treatment of posttrauamtic stress in veterans

description: The purpose of this preliminary study was to investigate the effectiveness of Human Givens (HG) Rewind treatment for war veterans suffering from post traumatic stress. All war veterans who self-referred between 24 April 2014 and 14 January, 2015 for treatment with PTSD Resolution Ltd, a charity for treating veterans. The charity then referred the veterans to fully qualified and registered HG therapists. The charity registered clients online on the Pragmatic Research Tracker when the referral was made. Clients completed the Impact of Events Scale - Extended Version (IES-E) and Clinical Outcomes in Routine Evaluation (CORE-10). HG therapy included the Griffin & Tyrrell (2001) Rewind treatment protocol.
DOI: 10.6084/m9.figshare.11315849
title: MOESM2 of Genome-wide association study (GWAS) for morphological and yield-related traits in an oil palm hybrid (Elaeis oleifera x Elaeis guineensis) population

description: Additional file 2: Table S2. SNPs identified per chromosome using the reference genome of E. guineensis.
DOI: 10.6084/m9.figshare.11315843
title: MOESM1 of Genome-wide association study (GWAS) for morphological and yield-related traits in an oil palm hybrid (Elaeis oleifera x Elaeis guineensis) population

description: Additional file 1: Table S1. List of the OxG and parentals oil palms used in this study.
DOI: 10.6084/m9.figshare.11315849.v1
title: MOESM2 of Genome-wide association study (GWAS) for morphological and yield-related traits in an oil palm hybrid (Elaeis oleifera x Elaeis guineensis) population

description: Additional file 2: Table S2. SNPs identified per chromosome using the reference genome of E. guineensis.
DOI: 10.6084/m9.figshare.11315843.v1
title: MOESM1 of Genome-wide association study (GWAS) for morphological and yield-related traits in an oil palm hybrid (Elaeis oleifera x Elaeis guineensis) population

description: Additional file 1: Table S1. List of the OxG and parentals oil palms used in this study.
DOI: 10.6084/m9.figshare.11315720
title: MOESM3 of Developmental hypomyelination in Wolfram syndrome: new insights from neuroimaging and gene expression analyses

description: Additional file 3. A list of biological processes from Gene ontology analysis of 4 month-4 years WFS1-related gene set using BiNGO, a biological network gene ontology tool.
DOI: 10.6084/m9.figshare.11315720.v1
title: MOESM3 of Developmental hypomyelination in Wolfram syndrome: new insights from neuroimaging and gene expression analyses

description: Additional file 3. A list of biological processes from Gene ontology analysis of 4 month-4 years WFS1-related gene set using BiNGO, a biological network gene ontology tool.
DOI: 10.6084/m9.figshare.11315708
title: MOESM1 of Secretory RING finger proteins function as effectors in a grapevine galling insect

description: Additional file 1: Table S1. Differential expression profiles for RING domain containing genes for each contrast: Stage, Location. Table S2. Numbers of up (down) regulated genes for each process defined within the UPS and whether the specific contrast showed enrichment relative to all other differentially expresssed genes.
DOI: 10.6084/m9.figshare.11315702
title: MOESM1 of Developmental hypomyelination in Wolfram syndrome: new insights from neuroimaging and gene expression analyses

description: Additional file 1. A list of the most highly correlated genes with WFS1 in BrainCloud database, available in CSEA dataset.
DOI: 10.6084/m9.figshare.11315702.v1
title: MOESM1 of Developmental hypomyelination in Wolfram syndrome: new insights from neuroimaging and gene expression analyses

description: Additional file 1. A list of the most highly correlated genes with WFS1 in BrainCloud database, available in CSEA dataset.
DOI: 10.6084/m9.figshare.11315708.v1
title: MOESM1 of Secretory RING finger proteins function as effectors in a grapevine galling insect

description: Additional file 1: Table S1. Differential expression profiles for RING domain containing genes for each contrast: Stage, Location. Table S2. Numbers of up (down) regulated genes for each process defined within the UPS and whether the specific contrast showed enrichment relative to all other differentially expresssed genes.
DOI: 10.6084/m9.figshare.11315690
title: MOESM2 of CAIX is a predictor of pathological complete response and is associated with higher survival in locally advanced breast cancer submitted to neoadjuvant chemotherapy

description: Additional file 2: Table S2. Association of clinicopathologic characteristics and proteins related to glycolytic metabolism with DFS, DSS and OS after NAC – Cox proportional hazards regression model. Table showing the association between clinicopathologic characteristics and proteins related to glycolytic metabolism with DFS, DSS and OS after NAC.
DOI: 10.6084/m9.figshare.11315681
title: MOESM1 of CAIX is a predictor of pathological complete response and is associated with higher survival in locally advanced breast cancer submitted to neoadjuvant chemotherapy

description: Additional file 1: Table S1. Association between metabolism-related proteins expression and clinicopathologic characteristics. Table showing the association between metabolism-related proteins expression and clinicopathologic characteristics.
DOI: 10.6084/m9.figshare.11315687
title: MOESM6 of Genomic and evolutionary features of two AHPND positive Vibrio parahaemolyticus strains isolated from shrimp (Penaeus monodon) of south-west Bangladesh

description: Additional file 6. List of genes found in the Genomic islands (GIs) of VPAHPND strains MSR16 and MSR17.
DOI: 10.6084/m9.figshare.11315690.v1
title: MOESM2 of CAIX is a predictor of pathological complete response and is associated with higher survival in locally advanced breast cancer submitted to neoadjuvant chemotherapy

description: Additional file 2: Table S2. Association of clinicopathologic characteristics and proteins related to glycolytic metabolism with DFS, DSS and OS after NAC – Cox proportional hazards regression model. Table showing the association between clinicopathologic characteristics and proteins related to glycolytic metabolism with DFS, DSS and OS after NAC.
DOI: 10.6084/m9.figshare.11315681.v1
title: MOESM1 of CAIX is a predictor of pathological complete response and is associated with higher survival in locally advanced breast cancer submitted to neoadjuvant chemotherapy

description: Additional file 1: Table S1. Association between metabolism-related proteins expression and clinicopathologic characteristics. Table showing the association between metabolism-related proteins expression and clinicopathologic characteristics.
DOI: 10.6084/m9.figshare.11315672
title: MOESM4 of Genomic and evolutionary features of two AHPND positive Vibrio parahaemolyticus strains isolated from shrimp (Penaeus monodon) of south-west Bangladesh

description: Additional file 4. Predicted antibiotic resistance genes in MSR16 and MSR17 strains of VPAHPND.
DOI: 10.6084/m9.figshare.11315687.v1
title: MOESM6 of Genomic and evolutionary features of two AHPND positive Vibrio parahaemolyticus strains isolated from shrimp (Penaeus monodon) of south-west Bangladesh

description: Additional file 6. List of genes found in the Genomic islands (GIs) of VPAHPND strains MSR16 and MSR17.
DOI: 10.6084/m9.figshare.11315660
title: MOESM1 of Genomic and evolutionary features of two AHPND positive Vibrio parahaemolyticus strains isolated from shrimp (Penaeus monodon) of south-west Bangladesh

description: Additional file 1. Matrix representation of ANI values of strains MSR16 and MSR17 compared to other AHPND positive V. parahaemolyticus strains.
DOI: 10.6084/m9.figshare.11315672.v1
title: MOESM4 of Genomic and evolutionary features of two AHPND positive Vibrio parahaemolyticus strains isolated from shrimp (Penaeus monodon) of south-west Bangladesh

description: Additional file 4. Predicted antibiotic resistance genes in MSR16 and MSR17 strains of VPAHPND.
DOI: 10.6084/m9.figshare.11315660.v1
title: MOESM1 of Genomic and evolutionary features of two AHPND positive Vibrio parahaemolyticus strains isolated from shrimp (Penaeus monodon) of south-west Bangladesh

description: Additional file 1. Matrix representation of ANI values of strains MSR16 and MSR17 compared to other AHPND positive V. parahaemolyticus strains.
DOI: 10.6084/m9.figshare.11315621
title: MOESM4 of Weighted gene co-expression network analysis unveils gene networks associated with the Fusarium head blight resistance in tetraploid wheat

description: Additional file 4. Genetic variants identified within and in 5′ and 3′ un-translated region around candidate hub genes identified in five gene co-expression networks (modules) significantly correlated with Type II FHB resistance.
DOI: 10.6084/m9.figshare.11315612
title: MOESM3 of Weighted gene co-expression network analysis unveils gene networks associated with the Fusarium head blight resistance in tetraploid wheat

description: Additional file 3. Candidate defense genes of the five gene co-expression networks (modules) significantly correlated with Type II FHB resistance.
DOI: 10.6084/m9.figshare.11315621.v1
title: MOESM4 of Weighted gene co-expression network analysis unveils gene networks associated with the Fusarium head blight resistance in tetraploid wheat

description: Additional file 4. Genetic variants identified within and in 5′ and 3′ un-translated region around candidate hub genes identified in five gene co-expression networks (modules) significantly correlated with Type II FHB resistance.
DOI: 10.6084/m9.figshare.11315612.v1
title: MOESM3 of Weighted gene co-expression network analysis unveils gene networks associated with the Fusarium head blight resistance in tetraploid wheat

description: Additional file 3. Candidate defense genes of the five gene co-expression networks (modules) significantly correlated with Type II FHB resistance.
DOI: 10.6084/m9.figshare.11315579
title: MOESM1 of A metastable subproteome underlies inclusion formation in muscle proteinopathies

description: Additional file 1: Dataset S1. Proteins enriched in rimmed vacuoles. Dataset S2. Proteins enriched in plaques, neurofibrillary tangles, and protein aggregation myopathies. Dataset S3. Aggregation propensity scores. Zagg, ZaggSC$$ {Z}_{agg}^{SC} $$, and TANGO scores (4) calculated as described in Methods. Dataset S4. mRNA expression levels. Dataset S5. Hereditary protein aggregation myopathy abundance data. Dataset S6. Sporadic inclusion body myositis abundance data. Dataset S7. Unfolded supersaturation scores. Dataset S8. Hereditary protein aggregation myopathy supersaturation scores (σf). Dataset S9. Sporadic inclusion body myositis supersaturation scores (σf). Dataset S10. Sporadic inclusion body myositis supersaturation scores (σfT$$ {\sigma}_f^T $$). Dataset S11. Upregulated and downregulated proteins in sporadic inclusion body myositis. Dataset S12. Summary of statistical analysis and families of statistical tests.
DOI: 10.6084/m9.figshare.11315579.v1
title: MOESM1 of A metastable subproteome underlies inclusion formation in muscle proteinopathies

description: Additional file 1: Dataset S1. Proteins enriched in rimmed vacuoles. Dataset S2. Proteins enriched in plaques, neurofibrillary tangles, and protein aggregation myopathies. Dataset S3. Aggregation propensity scores. Zagg, ZaggSC$$ {Z}_{agg}^{SC} $$, and TANGO scores (4) calculated as described in Methods. Dataset S4. mRNA expression levels. Dataset S5. Hereditary protein aggregation myopathy abundance data. Dataset S6. Sporadic inclusion body myositis abundance data. Dataset S7. Unfolded supersaturation scores. Dataset S8. Hereditary protein aggregation myopathy supersaturation scores (σf). Dataset S9. Sporadic inclusion body myositis supersaturation scores (σf). Dataset S10. Sporadic inclusion body myositis supersaturation scores (σfT$$ {\sigma}_f^T $$). Dataset S11. Upregulated and downregulated proteins in sporadic inclusion body myositis. Dataset S12. Summary of statistical analysis and families of statistical tests.
DOI: 10.6084/m9.figshare.11315438
title: MOESM2 of Challenges and standardization of microRNA profiling in serum and cerebrospinal fluid in dogs suffering from non-infectious inflammatory CNS disease

description: Additional file 2. Raw qPCR data from serum samples 1 and 2 are the two cDNA replicates; NTC, sample without template; No RT, sample done without PAP polymerase. The assay miR-221-3p was out of LOD.