cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1501021.v2
title: Tracing a late Mesozoic magmatic arc along the Southeast Asian margin from the granitoids drilled from the northern South China Sea

description: The granitoid suites encountered by drilling in the northern South China Sea (SCS) remain important for understanding the evolution of the late Mesozoic Southeast Asian continental margin. They comprise a range of rock types including diorite, tonalite, granodiorite, monzogranite and syenogranite with SiO<sub>2</sub> spanning 56.4–76.8%. Newly acquired secondary ion mass spectrometry (SIMS) U–Pb ages of samples from 14 boreholes indicate two key magmatic episodes: Late Jurassic (161.6–148.2 Ma) and Early Cretaceous (136.5–101.7 Ma). Jurassic magmatism probably began in late Middle Jurassic time, documented by the dates of inherited zircons. The granitoids are dominated by metaluminous to weakly peraluminous I-type granites, are transitional between magnesian and ferroan, and encompass calc-alkaline, high-K calc-alkaline, and shoshonitic series. The geochemical signatures suggest that these granitoids were mostly generated in a normal continental arc environment. Notable features of the I-type samples are well-defined negative Nb–Ta–Ti anomalies typical of arc-related magmas. Taken together, the late Mesozoic arc granites of the SCS, the accretionary wedge of the Palawan terrane to the southeast, and the zone of lithospheric extension north of the SCS throughout Southeast China, define a southeast-to-northwest trench-arc-backarc architecture for the late Mesozoic Southeast Asian continental margin whose geodynamic setting is related to subduction of the Palaeo-Pacific slab beneath the Asian continent. Two key subduction episodes are recognized, one in Late Jurassic and the other in Early Cretaceous time.
DOI: 10.6084/m9.figshare.1512834.v232
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1512834.v233
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1501021.v3
title: Tracing a late Mesozoic magmatic arc along the Southeast Asian margin from the granitoids drilled from the northern South China Sea

description: The granitoid suites encountered by drilling in the northern South China Sea (SCS) remain important for understanding the evolution of the late Mesozoic Southeast Asian continental margin. They comprise a range of rock types including diorite, tonalite, granodiorite, monzogranite and syenogranite with SiO<sub>2</sub> spanning 56.4–76.8%. Newly acquired secondary ion mass spectrometry (SIMS) U–Pb ages of samples from 14 boreholes indicate two key magmatic episodes: Late Jurassic (161.6–148.2 Ma) and Early Cretaceous (136.5–101.7 Ma). Jurassic magmatism probably began in late Middle Jurassic time, documented by the dates of inherited zircons. The granitoids are dominated by metaluminous to weakly peraluminous I-type granites, are transitional between magnesian and ferroan, and encompass calc-alkaline, high-K calc-alkaline, and shoshonitic series. The geochemical signatures suggest that these granitoids were mostly generated in a normal continental arc environment. Notable features of the I-type samples are well-defined negative Nb–Ta–Ti anomalies typical of arc-related magmas. Taken together, the late Mesozoic arc granites of the SCS, the accretionary wedge of the Palawan terrane to the southeast, and the zone of lithospheric extension north of the SCS throughout Southeast China, define a southeast-to-northwest trench-arc-backarc architecture for the late Mesozoic Southeast Asian continental margin whose geodynamic setting is related to subduction of the Palaeo-Pacific slab beneath the Asian continent. Two key subduction episodes are recognized, one in Late Jurassic and the other in Early Cretaceous time.
DOI: 10.6084/m9.figshare.1512834.v234
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1501021.v4
title: Tracing a late Mesozoic magmatic arc along the Southeast Asian margin from the granitoids drilled from the northern South China Sea

description: The granitoid suites encountered by drilling in the northern South China Sea (SCS) remain important for understanding the evolution of the late Mesozoic Southeast Asian continental margin. They comprise a range of rock types including diorite, tonalite, granodiorite, monzogranite and syenogranite with SiO<sub>2</sub> spanning 56.4–76.8%. Newly acquired secondary ion mass spectrometry (SIMS) U–Pb ages of samples from 14 boreholes indicate two key magmatic episodes: Late Jurassic (161.6–148.2 Ma) and Early Cretaceous (136.5–101.7 Ma). Jurassic magmatism probably began in late Middle Jurassic time, documented by the dates of inherited zircons. The granitoids are dominated by metaluminous to weakly peraluminous I-type granites, are transitional between magnesian and ferroan, and encompass calc-alkaline, high-K calc-alkaline, and shoshonitic series. The geochemical signatures suggest that these granitoids were mostly generated in a normal continental arc environment. Notable features of the I-type samples are well-defined negative Nb–Ta–Ti anomalies typical of arc-related magmas. Taken together, the late Mesozoic arc granites of the SCS, the accretionary wedge of the Palawan terrane to the southeast, and the zone of lithospheric extension north of the SCS throughout Southeast China, define a southeast-to-northwest trench-arc-backarc architecture for the late Mesozoic Southeast Asian continental margin whose geodynamic setting is related to subduction of the Palaeo-Pacific slab beneath the Asian continent. Two key subduction episodes are recognized, one in Late Jurassic and the other in Early Cretaceous time.
DOI: 10.6084/m9.figshare.1501021.v5
title: Tracing a late Mesozoic magmatic arc along the Southeast Asian margin from the granitoids drilled from the northern South China Sea

description: The granitoid suites encountered by drilling in the northern South China Sea (SCS) remain important for understanding the evolution of the late Mesozoic Southeast Asian continental margin. They comprise a range of rock types including diorite, tonalite, granodiorite, monzogranite and syenogranite with SiO<sub>2</sub> spanning 56.4–76.8%. Newly acquired secondary ion mass spectrometry (SIMS) U–Pb ages of samples from 14 boreholes indicate two key magmatic episodes: Late Jurassic (161.6–148.2 Ma) and Early Cretaceous (136.5–101.7 Ma). Jurassic magmatism probably began in late Middle Jurassic time, documented by the dates of inherited zircons. The granitoids are dominated by metaluminous to weakly peraluminous I-type granites, are transitional between magnesian and ferroan, and encompass calc-alkaline, high-K calc-alkaline, and shoshonitic series. The geochemical signatures suggest that these granitoids were mostly generated in a normal continental arc environment. Notable features of the I-type samples are well-defined negative Nb–Ta–Ti anomalies typical of arc-related magmas. Taken together, the late Mesozoic arc granites of the SCS, the accretionary wedge of the Palawan terrane to the southeast, and the zone of lithospheric extension north of the SCS throughout Southeast China, define a southeast-to-northwest trench-arc-backarc architecture for the late Mesozoic Southeast Asian continental margin whose geodynamic setting is related to subduction of the Palaeo-Pacific slab beneath the Asian continent. Two key subduction episodes are recognized, one in Late Jurassic and the other in Early Cretaceous time.
DOI: 10.6084/m9.figshare.1512834.v235
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1512834.v236
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1501021.v6
title: Tracing a late Mesozoic magmatic arc along the Southeast Asian margin from the granitoids drilled from the northern South China Sea

description: The granitoid suites encountered by drilling in the northern South China Sea (SCS) remain important for understanding the evolution of the late Mesozoic Southeast Asian continental margin. They comprise a range of rock types including diorite, tonalite, granodiorite, monzogranite and syenogranite with SiO<sub>2</sub> spanning 56.4–76.8%. Newly acquired secondary ion mass spectrometry (SIMS) U–Pb ages of samples from 14 boreholes indicate two key magmatic episodes: Late Jurassic (161.6–148.2 Ma) and Early Cretaceous (136.5–101.7 Ma). Jurassic magmatism probably began in late Middle Jurassic time, documented by the dates of inherited zircons. The granitoids are dominated by metaluminous to weakly peraluminous I-type granites, are transitional between magnesian and ferroan, and encompass calc-alkaline, high-K calc-alkaline, and shoshonitic series. The geochemical signatures suggest that these granitoids were mostly generated in a normal continental arc environment. Notable features of the I-type samples are well-defined negative Nb–Ta–Ti anomalies typical of arc-related magmas. Taken together, the late Mesozoic arc granites of the SCS, the accretionary wedge of the Palawan terrane to the southeast, and the zone of lithospheric extension north of the SCS throughout Southeast China, define a southeast-to-northwest trench-arc-backarc architecture for the late Mesozoic Southeast Asian continental margin whose geodynamic setting is related to subduction of the Palaeo-Pacific slab beneath the Asian continent. Two key subduction episodes are recognized, one in Late Jurassic and the other in Early Cretaceous time.
DOI: 10.6084/m9.figshare.1500898
title: Luke's ghost hacker

description: Written as part of a commentary on this PeerJ PrePrint: https://peerj.com/preprints/1266/
DOI: 10.6084/m9.figshare.1500901
title: Reply to Bishop and Thompson

description: Reply to this PeerJ PrePrint https://peerj.com/preprints/1266/
DOI: 10.6084/m9.figshare.1512834.v237
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1500901.v1
title: Reply to Bishop and Thompson

description: Reply to this PeerJ PrePrint https://peerj.com/preprints/1266/
DOI: 10.6084/m9.figshare.1500898.v1
title: Luke's ghost hacker

description: Written as part of a commentary on this PeerJ PrePrint: https://peerj.com/preprints/1266/
DOI: 10.6084/m9.figshare.1512834.v238
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1500817
title: MalassisDelCulCollins

description: Raw data required for publication of Malassis, Del Cul & Collins (2015) PLoS One
DOI: 10.6084/m9.figshare.1500811
title: Validação externa de sistemas de classificação de litíase: Guy’s, S-ReSC, S.T.O.N.E. e CROES Tabela 1

description: Validação externa de sistemas de classificação de litíase: Guy’s, S-ReSC, S.T.O.N.E. e CROES Tabela 1
DOI: 10.6084/m9.figshare.1500817.v1
title: MalassisDelCulCollins

description: Raw data required for publication of Malassis, Del Cul & Collins (2015) PLoS One
DOI: 10.6084/m9.figshare.1500811.v1
title: Validação externa de sistemas de classificação de litíase: Guy’s, S-ReSC, S.T.O.N.E. e CROES Tabela 1

description: Validação externa de sistemas de classificação de litíase: Guy’s, S-ReSC, S.T.O.N.E. e CROES Tabela 1
DOI: 10.6084/m9.figshare.1500803
title: Supplement1

description: basic theory
DOI: 10.6084/m9.figshare.1512834.v239
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1500803.v1
title: Supplement1

description: basic theory
DOI: 10.6084/m9.figshare.1512834.v240
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1500791
title: Conflict and cooperation over sex: the consequences of social and genetic polyandry for reproductive success in dunnocks - Dataset

description: This is the data used to obtain the results presented in the manuscript entitled "Conflict and cooperation over sex: the consequences of social and genetic polyandry for reproductive success in dunnocks", which has been published in the Journal of Animal Ecology. Should you have any inquiries concerning the usage of the datasets, please do not hesitate to contact us.
DOI: 10.6084/m9.figshare.1512834.v241
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1500791.v3
title: Conflict and cooperation over sex: the consequences of social and genetic polyandry for reproductive success in dunnocks - Dataset

description: This is the data used to obtain the results presented in the manuscript entitled "Conflict and cooperation over sex: the consequences of social and genetic polyandry for reproductive success in dunnocks", which has been published in the Journal of Animal Ecology. Should you have any inquiries concerning the usage of the datasets, please do not hesitate to contact us.