cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2056317.v1
title: Dataset of Experimental Mapping of Gastrointestinal Spatiotemporal mRNA Expression of Ghrelin vs Growth Hormone Receptor (GHR) and a New Growth Yield Y(ζk) Model Based on Perturbation Theory - SM01

description: This is full dataset of input variables and output values.
DOI: 10.6084/m9.figshare.2056275
title: Dermacentor occidentalis microbiome 16S rRNA gene sequences from San Diego County

description: Demultiplexed 16S rRNA gene sequences derived from individual Dermacentor occidentalis ticks from 4 different areas in San Diego County in 2014. Sequenced on an Illumina MiSeq platform.
DOI: 10.6084/m9.figshare.2056290
title: Relevant data in the manuscript

description: This study evaluated the working memory performance of 18 patients experiencing their first onset of mild depression without treatment and 18 healthy matched controls.
DOI: 10.6084/m9.figshare.2056299.v1
title: Relevant data

description: This study evaluated the working memory (WM) performance of 18 patients experiencing their<br>first onset of mild depression without treatment and 18 healthy matched controls.<br>
DOI: 10.6084/m9.figshare.2056377.v4
title: Files for "A preliminary study on sinus fungus ball with microCT and x-ray fluorescence technique"

description: The supporting data files comprises:<br>1. S1 Video. Video of specimen extraction process by standard functional endoscopic sinus surgery (FESS).avi<br>2. S1 Fig. 2D projection images acquired by microCT<br>3. S2 Fig. Reconstructed slice images from all projection images acquired by micro CT<br>4. S1 Data. Fluorescence data of No.3 specimen.csv<br>5. S2 Data. Fluorescence data of mucosa.csv " <br>
DOI: 10.6084/m9.figshare.2056272
title: Mapping file for Dermacentor occidentalis 16S rRNA microbiome dataset from San Diego County

description: Mapping file for Illumina 16S rRNA gene sequence data derived from D. occidentalis ticks from 4 separate locations in San Diego County
DOI: 10.6084/m9.figshare.2056275.v2
title: Dermacentor occidentalis microbiome 16S rRNA gene sequences from San Diego County

description: Demultiplexed 16S rRNA gene sequences derived from individual Dermacentor occidentalis ticks from 4 different areas in San Diego County in 2014. Sequenced on an Illumina MiSeq platform.
DOI: 10.6084/m9.figshare.2056290.v1
title: Relevant data underlying the findingsdescribed in manuscript

description: This study evaluated the working memory performance of 18 patients experiencing their first onset of mild depression without treatment and 18 healthy matched controls.
DOI: 10.6084/m9.figshare.2056275.v1
title: Dermacentor occidentalis microbiome 16S rRNA gene sequences from Illumina MiSeq

description: Demultiplexed 16S rRNA gene sequences derived from individual Dermacentor occidentalis ticks from 4 different areas in San Diego County in 2014. Sequenced on an Illumina MiSeq platform.
DOI: 10.6084/m9.figshare.2056227
title: Data files for downstream analysis of the “mammalian codon usage” manuscript

description: Snapshot of the data used to run downstream analysis. A detailed methods description can be found in the manuscript and the associated analysis code.
DOI: 10.6084/m9.figshare.2056272.v2
title: Mapping file for Dermacentor occidentalis 16S rRNA microbiome dataset from San Diego County

description: Mapping file for Illumina 16S rRNA gene sequence data derived from D. occidentalis ticks from 4 separate locations in San Diego County
DOI: 10.6084/m9.figshare.2056290.v2
title: Relevant data

description: This study evaluated the working memory performance of 18 patients experiencing their first onset of mild depression without treatment and 18 healthy matched controls.
DOI: 10.6084/m9.figshare.2056272.v1
title: Mapping file for Dermacentor occidentalis microbiome from San Diego County

description: Mapping file for Illumina 16S rRNA gene sequence data derived from D. occidentals ticks from 4 separate locations in San Diego County
DOI: 10.6084/m9.figshare.2056290.v4
title: Relevant data in the manuscript

description: This study evaluated the working memory performance of 18 patients experiencing their first onset of mild depression without treatment and 18 healthy matched controls.
DOI: 10.6084/m9.figshare.2056290.v3
title: Relevant data

description: This study evaluated the working memory performance of 18 patients experiencing their first onset of mild depression without treatment and 18 healthy matched controls.
DOI: 10.17028/rd.lboro.2056149
title: Dataset:Experimental verification of nanofluid shear-wave reconversion in ultrasonic fields

description: These data are those presented in DM Forrester et al,Experimental verification of nanofluid shear-wave re-conversion in ultrasonic fields, Nanoscale 2015. (<strong>DOI: </strong>10.1039/C5NR07396K)The data represents the Figures in the paper, with both experimental ultrasonic spectroscopy results and simulated results. The zip file contains 24 Excel spreadsheets relating to the figures in the paper. All are labelled by Figure number.
DOI: 10.17028/rd.lboro.2056149.v1
title: Experimental verification of nanofluid shear-wave reconversion in ultrasonic fields

description: These data are those presented in DM Forrester et al,Experimental verification of nanofluid shear-wave re-conversion in ultrasonic fields, Nanoscale 2015. (<strong>DOI: </strong>10.1039/C5NR07396K)The data represents the Figures in the paper, with both experimental ultrasonic spectroscopy results and simulated results. The zip file contains 24 Excel spreadsheets relating to the figures in the paper. All are labelled by Figure number.
DOI: 10.6084/m9.figshare.2056107
title: S2 Results from the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

description: <b>S2 Results: Phylogenetic analysis report</b><br>ReproPhylo generated archive congaing the data, methods and results for the phylogenetic reconstruction of the SSU-rRNA tree.<br>
DOI: 10.6084/m9.figshare.2056107.v1
title: Nematoda TE MS, S1 Results

description: <b>S1 Results: Phylogenetic analysis report</b><br>ReproPhylo generated archive congaing the data, methods and results for the phylogenetic reconstruction of the SSU-rRNA tree.<br>
DOI: 10.6084/m9.figshare.2056107.v2
title: Nematoda TE MS, S2 Results

description: <b>S1 Results: Phylogenetic analysis report</b><br>ReproPhylo generated archive congaing the data, methods and results for the phylogenetic reconstruction of the SSU-rRNA tree.<br>
DOI: 10.6084/m9.figshare.2056107.v4
title: S2 Results from the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

description: <b>S2 Results: Phylogenetic analysis report</b><br>ReproPhylo generated archive congaing the data, methods and results for the phylogenetic reconstruction of the SSU-rRNA tree.<br>
DOI: 10.6084/m9.figshare.2056107.v3
title: Nematoda TE MS, S2 Results

description: <b>S1 Results: Phylogenetic analysis report</b><br>ReproPhylo generated archive congaing the data, methods and results for the phylogenetic reconstruction of the SSU-rRNA tree.<br>
DOI: 10.6084/m9.figshare.2056083
title: S3 Table from the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

description: <b>S3 Table: Genome assemblies used in this study</b><br>
DOI: 10.6084/m9.figshare.2056080
title: S2 Table from the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

description: <b>S2 Table - Transposable element counts in Nematoda genome assemblies</b><br>Species abbreviations correspond with the species names in Fig 1 (see manuscript)<br>
DOI: 10.6084/m9.figshare.2056080.v2
title: S2 Table from the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

description: <b>S2 Table - Transposable element counts in Nematoda genome assemblies</b><br>Species abbreviations correspond with the species names in Fig 1 (see manuscript)<br>
DOI: 10.6084/m9.figshare.2056077
title: raw data.rar

description: Raw data of paper "Cordycepin inhibits LPS induced inflammatory and matrix degradation in the intervertebral disc"
DOI: 10.6084/m9.figshare.2056080.v1
title: Nematoda TE MS, S2 Table

description: <b>S2 Table - Transposable element counts in Nematoda genome assemblies</b><br>Species abbreviations correspond with the species names in Fig 1 (see manuscript)<br>
DOI: 10.6084/m9.figshare.2056071
title: S1 Table from the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

description: <b>S1 Table: Life history information.</b><br>M4: Mating system information with four classes (gonochoristic, androdioecious,<br>facultative partenogene, apomict).<br>M3: Mating system information with three classes (gonochoristic, nonobligatory<br>sexual, apomict).<br>M2: Mating system information with three classes (gonochoristic, nongonochoristic).<br>P3: Parasitic lifestyle information with three classes (plant parasite, animal parasite,<br>free living).<br>P2:Parasitic lifestyle information with three classes (parasitic, free living).<br>
DOI: 10.6084/m9.figshare.2056083.v1
title: Nematoda TE MS, S3 Table

description: <b>S3 Table: Genome assemblies used in this study</b><br>
DOI: 10.6084/m9.figshare.2056083.v3
title: S3 Table from the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

description: <b>S3 Table: Genome assemblies used in this study</b><br>
DOI: 10.6084/m9.figshare.2056071.v2
title: S1 Table from the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

description: <b>S1 Table: Life history information.</b><br>M4: Mating system information with four classes (gonochoristic, androdioecious,<br>facultative partenogene, apomict).<br>M3: Mating system information with three classes (gonochoristic, nonobligatory<br>sexual, apomict).<br>M2: Mating system information with three classes (gonochoristic, nongonochoristic).<br>P3: Parasitic lifestyle information with three classes (plant parasite, animal parasite,<br>free living).<br>P2:Parasitic lifestyle information with three classes (parasitic, free living).<br>
DOI: 10.6084/m9.figshare.2056077.v1
title: raw data.rar

description: Raw data of paper "Cordycepin inhibits LPS induced inflammatory and matrix degradation in the intervertebral disc"
DOI: 10.6084/m9.figshare.2056083.v2
title: Nematoda TE MS, S3 Table

description: <b>S3 Table: Genome assemblies used in this study</b><br>
DOI: 10.6084/m9.figshare.2056071.v1
title: Nematoda TE MS, S1 Table

description: <b>S1 Table: Life history information.</b><br>M4: Mating system information with four classes (gonochoristic, androdioecious,<br>facultative partenogene, apomict).<br>M3: Mating system information with three classes (gonochoristic, nonobligatory<br>sexual, apomict).<br>M2: Mating system information with three classes (gonochoristic, nongonochoristic).<br>P3: Parasitic lifestyle information with three classes (plant parasite, animal parasite,<br>free living).<br>P2:Parasitic lifestyle information with three classes (parasitic, free living).<br>
DOI: 10.6084/m9.figshare.2056077.v2
title: raw data.rar

description: Raw data of paper "Cordycepin inhibits LPS induced inflammatory and matrix degradation in the intervertebral disc"
DOI: 10.6084/m9.figshare.2056038
title: table 1.docx

description: ENZYME PROPERTIES
DOI: 10.6084/m9.figshare.2056038.v1
title: table 1.docx

description: ENZYME PROPERTIES
DOI: 10.6084/m9.figshare.2056077.v4
title: raw data.rar

description: Raw data of paper "Cordycepin inhibits LPS induced inflammatory and matrix degradation in the intervertebral disc"
DOI: 10.6084/m9.figshare.2056077.v3
title: raw data.rar

description: Raw data of paper "Cordycepin inhibits LPS induced inflammatory and matrix degradation in the intervertebral disc"
DOI: 10.6084/m9.figshare.2055993
title: Neutron induced-fluorescence reflectometry on 10B4C data

description: Neutron reflectometry on highly absorbing films and its application to 10B4C-based neutron detectors
DOI: 10.6084/m9.figshare.2055948
title: Cutting Ratio and Density

description: Cutting Ratio and Density data archive from:<br><br><b>Leaf processing behavior in Atta leafcutter ants: 90% of leaf cutting takes place inside the nest, and ants select pieces that require less cutting</b><br><br>Ryan W. Garrett, Katherine A. Carlson, Matthew Scott Goggans, Michael H. Nesson, Christopher A. Shepard, Robert M. S. Schofield <br>
DOI: 10.6084/m9.figshare.2055993.v1
title: Neutron induced-fluorescence reflectometry on 10B4C data

description: Neutron reflectometry on highly absorbing films and its application to 10B4C-based neutron detectors
DOI: 10.6084/m9.figshare.2055945
title: Perimeter to Area Ratio Preference Test

description: Perimeter to Area Ratio Preference Test data archive from: <br><br><b>Leaf processing behavior in Atta leafcutter ants: 90% of leaf cutting takes place inside the nest, and ants select pieces that require less cutting</b><br><br>Ryan W. Garrett, Katherine A. Carlson, Matthew Scott Goggans, Michael H. Nesson, Christopher A. Shepard, Robert M. S. Schofield <br>
DOI: 10.6084/m9.figshare.2055945.v1
title: Perimeter to Area Ratio Preference Test

description: Perimeter to Area Ratio Preference Test data archive from: <br><br><b>Leaf processing behavior in Atta leafcutter ants: 90% of leaf cutting takes place inside the nest, and ants select pieces that require less cutting</b><br><br>Ryan W. Garrett, Katherine A. Carlson, Matthew Scott Goggans, Michael H. Nesson, Christopher A. Shepard, Robert M. S. Schofield <br>
DOI: 10.6084/m9.figshare.2055948.v1
title: Cutting Ratio and Density

description: Cutting Ratio and Density data archive from:<br><br><b>Leaf processing behavior in Atta leafcutter ants: 90% of leaf cutting takes place inside the nest, and ants select pieces that require less cutting</b><br><br>Ryan W. Garrett, Katherine A. Carlson, Matthew Scott Goggans, Michael H. Nesson, Christopher A. Shepard, Robert M. S. Schofield <br>
DOI: 10.6084/m9.figshare.2055942
title: Cutting Ratio and Density

description: <b>Cutting Ratio and Density data archive</b><br>Leaf processing behavior in <i>Atta</i> leafcutter ants:<i> </i>90% of leaf cutting takes place inside the nest, and ants select pieces that require less cutting Ryan W. Garrett, Katherine A. Carlson, Matthew Scott Goggans, Michael H. Nesson, Christopher A. Shepard, Robert M. S. Schofield<sup> </sup><b><br></b><br>
DOI: 10.6084/m9.figshare.2055867
title: Faces in commonly experienced configurations enter awareness faster due to their curvature relative to fixation

description: This fileset contains the data reported in: <br>Moors, P., Wagemans, J., de-Wit, L. (in press). Faces in commonly experienced configurations enter awareness faster due to their curvature relative to fixation. PeerJ.<br>The Explanation_Datasets.txt file contains an overview and explanation of all the variables in the other data sets.
DOI: 10.6084/m9.figshare.2055867.v1
title: Faces in commonly experienced configurations enter awareness faster due to their curvature relative to fixation

description: This fileset contains the data reported in: <br>Moors, P., Wagemans, J., de-Wit, L. (in press). Faces in commonly experienced configurations enter awareness faster due to their curvature relative to fixation. PeerJ.<br>The Explanation_Datasets.txt file contains an overview and explanation of all the variables in the other data sets.
DOI: 10.6084/m9.figshare.2055924.v1
title: HCC1143.dSKY.svg

description: D.SKY plot show the somatic copy number alterations (sCNAs) in cancer cell-line. For this breast cancer cell-line HCC1143, the D.SKY clearly showed the loss of chr8p and gain of chr8q, a pattern recurrently occurs to breast cancer genome.<br><br>While the D.SKY was originally generated to compare with the SKY plot at (http://old-www.path.cam.ac.uk/~pawefish/BreastCellLineDescriptions/HCC1143.html), D.SKY shows in greater details about Loss of heterozygosity and double deletions, corresponding regions marked in red and green shading on the cytobands respectively.<br>
DOI: 10.6084/m9.figshare.2055789
title: Photothermal evaluation of GNR uptake (control)

description: Images of cells treated with no GNRs-Si35 for 24 h and corresponding transmitted light images.
DOI: 10.6084/m9.figshare.2055789.v1
title: Photothermal evaluation of GNR uptake (control)

description: Images of cells treated with no GNRs-Si35 for 24 h and corresponding transmitted light images.
DOI: 10.6084/m9.figshare.2055882.v2
title: quantile regression model coefficient CIs using the empirical variance distribution approximation

description: This paper investigates the application of the empirical variance distribution (evd) function to estimate the confidence interval bounds of the quantile regression model coefficient estimates for homoscedastic unweighted data.<br>It can be seen that for this modest sample size, the bootstrap estimator and the two evd based confidence interval estimators exhibit nominal 95% coverage for homoscedastic iid cases in slope estimates and &gt;93% in the intercept estimates. For extreme quantiles in smaller samples or when homoscedastic iid error is not present, the coverage performance is lower.
DOI: 10.6084/m9.figshare.2055924.v2
title: HCC1143.dSKY.svg

description: D.SKY plot show the somatic copy number alterations (sCNAs) in cancer cell-line. For this breast cancer cell-line HCC1143, the D.SKY clearly showed the loss of chr8p and gain of chr8q, a pattern recurrently occurs to breast cancer genome.<br><br>While the D.SKY was originally generated to compare with the SKY plot at (http://old-www.path.cam.ac.uk/~pawefish/BreastCellLineDescriptions/HCC1143.html), D.SKY shows in greater details about Loss of heterozygosity and double deletions, corresponding regions marked in red and green shading on the cytobands respectively.<br>
DOI: 10.6084/m9.figshare.2055780
title: Data and scripts for Gray, Simmons et al. "Are riparian forest reserves sources of invertebrate biodiversity spillover and associated ecosystem functions in oil palm landscapes?"

description: See code files for description of each dataset when it is loaded.
DOI: 10.6084/m9.figshare.2055774
title: Source data for all figures from "Structured Dendritic Inhibition Supports Branch-selective Integration in CA1 Pyramidal Cells" by Bloss et al (2016).

description: This file contains the source data for all figures from "Structured Dendritic Inhibition Supports Branch-selective Integration in CA1 Pyramidal Cells" by Bloss et al (2016). Each tab relates to a figure (Figures 1-5 and Figures S1-S5). Where applicable, the group mean, SD, and N have been provided.<br>
DOI: 10.6084/m9.figshare.2055753
title: High-resolution Figure Images for Bloss et al, Neuron (2016)

description: These are the original high-resolution tiff image files that are pertain to Figures 1-4 and Figures S1-S3 from "Structured dendritic inhibition supports branch-selective integration in CA1 pyramidal cells" by Bloss et al, Neuron (2016). <br>-Figure 1 and S1 contain images of mouse hippocampal neuropil that was first imaged by array tomography (synaptophyson1 immunoreactivity in blue) then re-imaged with an electron microscope. This correlative imaging allows the accuracy of the light-level data to be measured directly against the TEM ultrastructure. Additional images in Figure S1 include an interneuron axon reconstructed across serial array sections (Panel D) and a reconstructed spine from array tomography and TEM serial sections (Panel E).<br>-Figures 2-4 contain images from our large-scale array tomography volumes. The image in Figure 2 Panel C is a portion of the volume from the VGAT-ires-Cre array, while those in Figures 3 and 4 are from the array volumes of SST-ires-Cre, nNOS-ires-CreER, and NPY-ires-Cre samples.<br>-Figure S2 contains confocal images of a fluorescent <i>in situ</i> hybridization experiment (Panel A and B; vgat mRNA, green; <i>gad2</i> mRNA, red; cre mRNA, blue), while those in Panel D show tiled confocal images of the hippocampal interneurons labeled by virus in each transgenic line. Images related to Panel E show that the Thy1-EGFP pyramidal cells rarely show immunoreactivity for Calbindin1 (a marker of pyramidal cells from the superficial lamina), and those from Panel F show the deep-layer position of Thy1-EGFP soma (green) within the pyramidal cell layer (DAPI in blue) from an array volume.<br>-Figure S3 Panel A contains array tomography projections of the different branch types present on a pyramidal cell dendritic tree, and Panel C shows a 3D model reconstruction of a single branch. <br> <br>
DOI: 10.6084/m9.figshare.2055780.v2
title: Data and scripts for Gray, Simmons et al. "Are riparian forest reserves sources of invertebrate biodiversity spillover and associated ecosystem functions in oil palm landscapes?"

description: See code files for description of each dataset when it is loaded.
DOI: 10.6084/m9.figshare.2055780.v1
title: Scripts and data used in "Are riparian forest reserves sources of invertebrate biodiversity spillover and associated ecosystem functions in oil palm landscapes?"

description: See code files for description of each dataset when it is loaded.
DOI: 10.6084/m9.figshare.2055735
title: MSOT images corresponding to a scan of a mouse after subcutaneous injection of cells (day 5)

description: 2x10<sup>4</sup>, 1x10<sup>5</sup>, and 2x10<sup>5</sup> GNR-Si35-labelled (30 pM) MSCs, as well as 2x10<sup>5</sup> control cells were subcutaneously injected at 4 different positions into the flank of a mouse, and monitored for up to 15 days. Scans of the regions where cells were injected were acquired with 0.3 mm steps at day 5. <br>It is shown here the images obtained after multispectral reconstruction. The backrgound (i.e. images corresponding to 860 nm) was made transparent.
DOI: 10.6084/m9.figshare.2055744
title: MSOT images corresponding to a scan of a mouse after subcutaneous injection of cells (day 10)

description: 2x10<sup>4</sup>, 1x10<sup>5</sup>, and 2x10<sup>5</sup> GNR-Si35-labelled (30 pM) MSCs, as well as 2x10<sup>5</sup> control cells were subcutaneously injected at 4 different positions into the flank of a mouse, and monitored for up to 15 days. Scans of the regions where cells where injected were acquired with 0.3 mm steps at day 10. <br>It is shown here the images obtained after multispectral reconstruction. The backrgound (i.e. images corresponding to 860 nm) was made transparent.