cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28477922.v2
title: <b>Seasonal differences and downstream transport of terrestrial vertebrate eDNA: insights from integrated camera-trap survey and water eDNA metabarcoding</b>

description: Effective biodiversity conservation requires efficient, comprehensive, and cost-effective monitoring tools. While environmental DNA (eDNA) metabarcoding is widely used for aquatic biodiversity assessments, its application for monitoring terrestrial biodiversity remains relatively underexplored. In particular, the effects of seasonal variation on eDNA sampling efficacy and the downstream transport distances of terrestrial vertebrate eDNA in river systems are not well understood. We conducted a year-long survey (April 2023–April 2024) that combined camera trapping and eDNA sampling in the southwestern mountains of China, a global biodiversity hotspot. Water eDNA samples were collected during low-rainfall (October–November 2023) and high-rainfall (April 2024) seasons. We compared seasonal effectiveness, evaluated costs, and developed an index to assess the relative importance of eDNA sampling sites. We also analyzed the elevational distributions of species detected by both methods and evaluated pairwise β-diversity patterns in relation to geographic distance to estimate the downstream transport distances. Our survey resulted in 143 camera trap deployments and 88 eDNA samples, yielding detections of 99 terrestrial vertebrate species. Across both seasons, eDNA and camera trapping exhibited high complementarity in species detection, with eDNA proving particularly cost-effective during the high-rainfall season. The relative importance of sampling sites varied between the low- and high-rainfall seasons. Terrestrial vertebrate DNA was transported downstream over distances of approximately 10–15 km. These findings provide valuable insights into sampling design and result interpretation in terrestrial vertebrate eDNA studies, underscoring the potential of eDNA metabarcoding as a reliable tool for monitoring terrestrial vertebrate biodiversity.
DOI: 10.6084/m9.figshare.8218937.v5
title: Dataset associated with Antczak et al., Environmental conditions shape the nature of a minimal bacterial genome published in Nature Communications 2019.

description: <br>Each file contains results obtained from a particular method for all the minimal genome proteins. Some of the results files are created by concatenation of separate protein or group of proteins results files.<br>Filename: 3DLigandSite.txtDescription: Structural models (in pdb format) generated by 3DLigandSite.<br>Filename: Argot2.5.txtDescription: Results (in csv format) containing Gene Ontology terms predicted by Argot2.5.<br>Filename: BLASTAgainstUniProt.txtDescription: Best BLAST for each of the proteins.<br>Filename: CATHFunFams.txtDescription: Results (in json format) containing CATH functional familes predicted by CATH FunFHMMer web server.<br>Filename: CombFunc.txtDescription: Results (in tsv format) containing Gene Ontology terms predicted by CombFunc.<br>Filename: DISOPRED3.txtDescription: Disorder ratio for each residue of all the proteins predicted by DISOPRED3.<br>Filename: eggNOG-Mapper.txtDescription: Results (in tsv format) containing Best Orthologous Groups, KEGG pathways, Gene Ontology terms, gene name, etc. predicted for all the proteins by eggNOG-Mapper.<br>Filename: FFPred3.txtDescription: Results containing Gene Ontology terms predicted by FFPred3.<br>Filename: InterPro.txtDescription: Results (in tsv format) containing families from all InterPro resources. Note interpro runs multiple domain/family based methods together so contains the results fro multiple individual programs<br>Filename: LipoP.txtDescription: Results containing predictions of lipoproteins.<br>Filename: LocTree3.txtDescription: Results (in csv format) containing Gene Ontology terms predicted by LocTree3.<br>Filename: Pfam.txtDescription: Domains predicted for each of the proteins by PfamScan.<br>Filename: Phyre2.zip (compressed txt file)Description: Results containing names of matching structural models and the alignment predicted by Phyre2.<br>Filename: TIGRFAM.txtDescription: Families of equivalogs predicted for each of the proteins by Hmmer3.<br>Filename: TMHMM.txtDescription: Results containing proteins topology predicted by TMHMM.<br>Filename: TrSSP.txtDescription: Results containing predictions of transporters and possible substrates made by TrSSP. <br>
DOI: 10.17632/3ybktpvbsd
title: Huettemann et al_041624

description: Deposition of supporting information for Huettemann et. al. with PLoS Biology for paper titled "Amyloid Accelerator Polyphosphate Implicated as the Mystery Density in α-Synuclein Fibrils"
DOI: 10.17632/bt4yxs7w5k
title: Effects of Calcium Chloride, Salicylic Acid, and Ascophyllum nodosum on cuticle thickness and quality traits in table grape cv. 'Italia' during fruit growth and ripening

description: These datasets have been used to analyze the effects of Calcium Chloride, Salicylic Acid, and Ascophyllum nodosum on the cuticle thickness of 'Italia' table grapes during growth and ripening. Once fully mature, the datasets were also used to evaluate their influence on quality traits
DOI: 10.26188/5c4006f902c82
title: sample_obesityDMR.csv

description: sample_obesityDMR
DOI: 10.6084/m9.figshare.11966322.v1
title: An experience of georeferencing and mapping use in the process of territorialization in Primary Health Care

description: ABSTRACT This article aims to report the experience of using tools that instrumentalize the process of territorialization in Primary Health Care. As methodological resources to guide the insertion and apprehension of problem situations, participant observation and field diary were used. The insertion with Family Health and Primary Care Extended Centers (Nasf-AB) provided the apprehension of the problems, and, with this, it was decided to develop mapping and georeferencing in order to collaborate with the process of territorialization of the unit, visibility of services and populations. The process of territorialization, which goes beyond bureaucratic incidents, has proved to be a challenge for professionals. It was possible to build tools with the Basic Health Unity teams in question, that could be north to other teams and health equipment.
DOI: 10.17632/ncrjm2knc2
title: Comparative study of mineralogy and geochemical compositions of commercially imported bentonite and some locally derived bentonitic clays from Anambra Basin, Southeastern Nigeria

description: The study focused on the mineralogy and chemical properties of the bentonites recovered from the geological units of the Imo Shale and Ameki Formation, compared with commercially imported bentonite (CIC), for its suitability in the formulation of drilling mud. About 50 suspected bentonite clays were investigated, and properties of starting materials such as pH, conductivity, composition, grain size, degree of alteration, and filtration conditions were utilized during screening. The CIC and four samples that met the API specification for drilling mud were subjected to X-ray diffraction (XRD) and X-ray fluorescence (XRF) analyses. The kaolinite-type consists of 55 % kaolinite, 20 % quartz, 15 % K-feldspar, and 10 % hematite. The smectite-type range from 28-47 % kaolinite, 26-32 % quartz, 12-20 % nontronite. The CIC consists of 12 % quartz, 10 % K-feldspar, 12 % calcite, 41 % nontronite, and 25 % amorphous materials. The SPL15 is predominantly kaolinite, whereas SPL6, SPL8, and SPL11, including the CIC, are smectite-type with a significant amount of kaolinite, except the CIC. The XRF results, show Al2O3 (15.77-25.49) wt%, Fe2O3 (6.61-10.01) wt%, SiO2 (51.67-59.11) wt%, and loss on ignition (7.57-11.22) wt%. Nontronite, one of the smectite group of minerals, was identified from the XRD data. These were supported by elevated concentrations of Fe in some of the samples. More silica may be present in an amorphous phase in the CIC. Palygorskite and basanite are also present in some of the clays. The smectite-type contained an elevated Fe/Al ratio and is rich in Ca-smectite, which differs significantly from the CIC. Based on these results, the primary criteria for the formulation of drilling fluid, using mineralogy, and chemical compositions are achievable. A comparison with the processed CIC has revealed significant levels of compositional disparity/deficits in the local clay. Consequently, treatment/beneficiations with some additives may be necessary to achieve the desired compositions.
DOI: 10.6084/m9.figshare.5125702.v1
title: Supplementary Material for: Long-Lasting Effects of BCG Vaccination on Both Heterologous Th1/Th17 Responses and Innate Trained Immunity

description: We have recently shown that BCG (Bacillus Calmette-Guérin) vaccination in healthy volunteers induces epigenetic reprogramming of monocytes, leading to increased cytokine production in response to nonrelated pathogens for up to 3 months after vaccination. This phenomenon was named ‘trained immunity'. In the present study we assessed whether BCG was able to induce long-lasting effects on both trained immunity and heterologous T helper 1 (Th1) and Th17 immune responses 1 year after vaccination. The production of TNFα and IL-1β to mycobacteria or unrelated pathogens was higher after 2 weeks and 3 months postvaccination, but these effects were less pronounced 1 year after vaccination. However, monocytes recovered 1 year after vaccination had an increased expression of pattern recognition receptors such as CD14, Toll-like receptor 4 (TLR4) and mannose receptor, and this correlated with an increase in proinflammatory cytokine production after stimulation with the TLR4 ligand lipopolysaccharide. The heterologous production of Th1 (IFN-γ) and Th17 (IL-17 and IL-22) immune responses to nonmycobacterial stimulation remained strongly elevated even 1 year after BCG vaccination. In conclusion, BCG induces sustained changes in the immune system associated with a nonspecific response to infections both at the level of innate trained immunity and at the level of heterologous Th1/Th17 responses.
DOI: 10.1184/r1/19968323.v1
title: Supporting information for Neural Network Embeddings based Similarity Search Method for Catalyst Systems

description: In this repository, we included code to prepare dataset, train gemnet model, build the faiss index, search the faiss index and visualize the searched results in the notebook `faiss-gemnet-qm9-mp.ipynb`. It reproduced our examples in the manuscript for the QM9 and the Materials Project dataset. For the OC20 dataset, we did not include its related data here because of its large size (&gt; 50 GB), the code to process the OC20 dataset is almost the same as the code included in the notebook for the QM9 dataset. <br> We include the intermediate data (GemNet checkpoints, lmdb, faiss index and the searched result for the QM9 and the Materials project in the directory `example-data`. We also put the GemNet checkpoint for the OC20 dataset in this directory. The training and evaluation of the Gaussian regression process model using the searched molecules for the query Benzene are demonstrated in the `ben-gp-data` directory, in which the `qm9-gp-gemnet-morgan-random-nrg.ipynb` can be run on Colab.
DOI: 10.6084/m9.figshare.28690112.v1
title: Raw Eye-Tracking Data on Students' Familiarisation Strategies with a General-Reference Map

description: This dataset contains raw eye-tracking data collected during a study "<b>Students’ strategies of familiarisation with a general-reference map of an unknown area</b>" investigating how upper-secondary students familiarise themselves with a general-reference map of an unfamiliar area. The study involved 20 participants (aged 18–20), who were given 60 seconds to explore a specially prepared map using a screen-based eye tracker (SMI RED 250, 250 Hz).The dataset includes number of fixations as well as fixation in predefined Areas of Interest (AOIs), such as the map face, legend, hypsometric tints, and the graphic scale. The data were exported from SMI BeGaze and converted using the SMI2OGAMA converter for further processing. Format: txt.
DOI: 10.6084/m9.figshare.29069240.v1
title: Persistent Scatterers Time series analysis of radar interferometry to determine the rate subsidence of areas around the open pit mines (Case study: Gol Gohar Sirjan Mine)

description: <i>The 4th National Geology and Mining Explorations Symposium</i>
DOI: 10.6084/m9.figshare.5122423.v1
title: Supplementary Material for: <i>FOXD1</i> Duplication Causes Branchial Defects and Interacts with the <i>TFAP2A</i> Gene Implicated in the Branchio-Oculo-Facial Syndrome in Causing Eye Effects in Zebrafish

description: Branchio-oculo-facial syndrome (BOFS) is a rare disorder characterized by maldevelopment of the first and second branchial arches, skin defects, facial dysmorphism, auricular, ophthalmological and oral abnormalities. A high clinical variability has been reported. Recently, mutations in <i>TFAP2A</i> were found to underlie this condition. A small duplication on 5q13 was detected in 2 family members with mild BOFS features. Molecular cytogenetic delineation of the duplication demonstrated that only 7 genes are affected: <i>LOC100289045, RGNEF, UTP15, ANKRA2, FUNDC2P1, BTF3</i> and <i>FOXD1</i>. The latter is expressed in the developing branchial arches and involved in cranio-facial development. Zebrafish embryos with combined inhibition of the expression of <i>foxd1l</i> and <i>tfap2a</i> show optic axis defects. We identified a novel locus associated with a mild BOFS-like phenotype. The functional in vivo experiments suggest an interaction between <i>FOXD1</i> and <i>TFAP2A</i>.
DOI: 10.6084/m9.figshare.8940290.v1
title: Antibiotic DATA.ods

description: DATA ON ANTIBIOTIC USE IN A LARGE URBAN TERTIARY HOSPITAL IN FREETOWN SIERRA LEONE
DOI: 10.17632/jhh8gr8b9m
title: R-matrix propagation program for solving coupled second-order differential equations

description: Title of program: RPROP Catalogue Id: AAJK_v1_0 Nature of problem Coupled second-order differential equations which arise in electron collision with atoms, ions and molecules are solved over a given range of the independent variable. The R-matrix at one end of the range is calculated given the R-matrix at the other end of the range. Versions of this program held in the CPC repository in Mendeley Data AAJK_v1_0; RPROP; 10.1016/0010-4655(82)90177-1 AAJK_v2_0; RPROP2; 10.1016/0010-4655(84)90025-0 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/k8by5xpp9t
title: VISUALIZING THE PRACTICE OF ALLEY GATING IN JAKARTA

description: A project to determine characteristic of communities that adopt alley gate.
DOI: 10.6084/m9.figshare.18707639.v1
title: FigShare Upload.xlsx

description: Gene expression data of surgically treated lung cancer patients
DOI: 10.6084/m9.figshare.26303080.v2
title: 2024年6月份指定规模以上工业生产主要数据

description: 2024年6月份指定规模以上工业生产主要数据
DOI: 10.6084/m9.figshare.26310967.v1
title: Global inventory of glacial lakes (GIGLak)

description: Climate change accelerates the extensive retreat of glaciers, leading to the widespread development of glacial lakes. A holistic picture on the spatial distribution of glacial lakes worldwide is crucial for tracking the outburst flood hazards. By employing a semi-automated mapping approach and rigorous quality control, this study inventories global glacial lakes (≥0.01 km<sup>2</sup>) worldwide (the ice cap/sheet of Antarctic and Greenland excluded). The evaluation result shows that this global glacial lake data has an overall accuracy of 89.37% and 91.42% in number and area, respectively.
DOI: 10.6084/m9.figshare.26378761.v1
title: Monitoring vegetation health in Australia using remote sensing: a case study using eucalypts

description: Global environmental change is altering vegetation health, highlighting the urgent need for effective vegetation monitoring. Rapid advancements in remote sensing platforms allow for the monitoring of vegetation at the landscape-scale. Within Australia, eucalypt vegetation is vital for conservation efforts due to its high diversity, wide distribution, and critical role in maintaining ecosystem health and resilience. We use a systematic literature review to demonstrate the successful application of remote sensing, and to discuss the potential of remote sensing to monitor diverse aspects of changes in the health of eucalypt vegetation in Australia. The eucalypt vegetation in several regions, including important biodiversity centres, remains little studied by remote sensing approaches. Concerningly, location data for study sites was inadequately reported in most studies. Furthermore, many studies did not implement the best possible remote sensing approach; for example, higher-resolution satellite imagery was often not used despite being freely available.To Improve the monitoring of eucalypt vegetation health, we recommend extending the spatial coverage of the remote sensing of eucalypt vegetation to all key regions throughout Australia, using freely available satellite imagery at 3 m resolution in remote areas. Furthermore, the accuracy of locational data should be improved, reporting, the longitudes and latitudes of study areas as a minimum. Finally, the best possible remote sensing approach should be implemented, including the highest spatial resolution imagery and time-series imagery (where available). More inter-disciplinary collaboration between conservationists/ecologists and remote sensers, and the development of a framework that assists with the selection of appropriate remote sensing applications for monitoring vegetation health based on the focus and budget of a study could assist in navigating the complexities involved. These proposed improvements would allow more effective monitoring of changes in vegetation health, leading to better-informed choices for conserving eucalypt ecosystems in Australia under global change.
DOI: 10.6084/m9.figshare.27068203.v1
title: Data for Spatiotemporal variation in population dynamics of a narrow endemic, <i>Ranunculus austro-oreganus</i>

description: We performed demographic surveys in three populations of <i>Ranunculus austro-oreganus</i> over four years (2015-2018), for a total of three demographic transitions. In the main demographic dataset, we collected a suite of demographic traits (rosette size, flowering status, missing leaves, etc.). With these data, we fit a size structured population models and life table response experiments to investigate vital rates driving spatiotemporal variation in population growth. We used the seedling dataset to estimate the average number of seedlings produced per flower. Lastly, the climate dataset was used to generate figures showing the historic and contemporary climate at our three study sites.
DOI: 10.6084/m9.figshare.9793103.v1
title: Columbia River

description: Supporting information of article published in Journal of Geophysical Research (JGR)-Oceans: https://doi.org/10.1029/2019JC015336Title: Correlation of Remotely Sensed Surface Reflectance with Forcing Variables in Six Different EstuariesCorrespondence to: Jing Tao, jing.tao@dal.caDOI: 10.6084/m9.figshare.9793103<br>Landsat-8 images output: 201xxxxx_DSF_SC7_pixEx_NetCDF_measurements.txt <br>Transect location:SeaDas_pin_CRE_allSC.txt<br><br>Turbidity data:CMOP_Turbidity_10v.mat<br>River Flow:RiverFlow_CF.mat<br>Beaver_discharge2.csv<br><br>Tidal data:<br>Tidal_range_CRE.mat<br>20xxCO-OPS__9439040__hr.csv<br>
DOI: 10.17632/gsbmknrhkv
title: SUT-Crack

description: The SUT-Crack dataset contains high-quality images of asphalt pavement cracks, specifically curated for crack detection using deep learning techniques like classification, object detection, and segmentation. Careful consideration was given during dataset creation to encompass various crack detection challenges, such as oil stains, shadows, and different lighting conditions. The images were captured from a fixed height of 672 mm above the pavement surface, facilitating calibration for real-world crack length measurements. Notably, the dataset also includes geotags, providing precise latitude and longitude coordinates for each image.
DOI: 10.17632/sm29k8c37w
title: Detrital zircon data_Supplementary Material 2

description: This file contains the following data of the detrital zircons from ENC:
1. Data for detrital zircon U-Pb dating and trace element compositions.
2. Collecting detrital zircon age data of sandstones from other studies.
DOI: 10.6084/m9.figshare.11793849.v1
title: K23-6_FS_R1.fastq.gz.gpg

description: mFAST-SeqS data
DOI: 10.6084/m9.figshare.25458145.v1
title: raw data files.xlsx

description: <b>Mitigation of Acute Lung Injury by Human Bronchial Epithelial Cell-derived Extracellular Vesicles via ANXA1-mediated FPR Signaling</b>
DOI: 10.17632/d93gw6ck27
title: Problem-solving Strategies for the Development of Geometric Imagination

description: Dataset contains eye movement data from 45 participants solving pictorial geometry problems.
DOI: 10.6084/m9.figshare.19412180.v3
title: CreativeDestruction_Supplementary_Files_2-8

description: Multiple Sequence Alignments for: the OB-fold domain of uL2; the SH3 domain of aS4; the OB-fold domain of aS28, the cradle loop barrel domain of bIF2; the cradle loop barrel domain of aIF5B.
DOI: 10.6084/m9.figshare.24287857.v1
title: Porosity and pore size distribution（汇总）.xlsx

description: main data for “<b>Effects of freeze‒thaw cycles and the prefreezing water content on the soil pore size distribution</b><b>”</b>
DOI: 10.6084/m9.figshare.24559045.v1
title: Interactive neuroinflammation pathways and transcriptomics-based identification of drugs and chemical compounds for schizophrenia

description: Schizophrenia is a psychiatric disorder affecting 1% of the population. Accumulating evidence indicates that neuroinflammation is involved in the pathology of these disorders by altering neurodevelopmental processes and specifically affecting glutamatergic signalling and astrocytic functioning. The aim of this study was to curate interactive biological pathways involved in schizophrenia for the identification of novel pharmacological targets implementing pathway, gene ontology, and network analysis. Neuroinflammatory pathways were created using PathVisio and published in WikiPathways. A transcriptomics dataset, originally created by Narla et al. was selected for data visualisation and analysis. Transcriptomics data was visualised within pathways and networks, extended with transcription factors, pathways, and drugs. Network hubs were determined based on degrees of connectivity. Glutamatergic, immune, and astrocytic signalling as well as extracellular matrix reorganisation were altered in schizophrenia while we did not find an effect on the complement system. Pharmacological agents that target the glutamate receptor subunits, inflammatory mediators, and metabolic enzymes were identified. New neuroinflammatory pathways incorporating the extracellular matrix, glutamatergic neurons, and astrocytes in the aetiology of schizophrenia were established. Transcriptomics based network analysis provided novel targets, including extra-synaptic glutamate receptors, glutamate transporters and extracellular matrix molecules that can be evaluated for therapeutic strategies.
DOI: 10.6084/m9.figshare.6387494.v1
title: CSIF

description: This dataset is associated with the Continuous SIF project, the code and description can be found in https://github.com/zhangyaonju/continous_SIF