cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3563724.v1
title: Supplement 1. Ant species occurrence data, ant abundance data, and environmental variables for regression analysis.

description: File List tbspecies.txt -- (MD5: 26a77c828649475ba59510d0fc2452bc) tbabundance.txt -- (MD5: 06314ecd127474788b5970eadb4caa82) tbenvvars.txt -- (MD5: 1dec3e3ce91d155f0509a7709193c462) Description tbspecies.txt is a tab-delimited text file with three columns. The first row is column headings. Each row is a species occurrence in a sample. samplecode is a unique code for a sample. Note that samples that contained no ants are not in this file. To get sample sizes at each site, see Appendix A. elevation(m) is the elevation of the site, in meters, and can be used to group samples by site. species is the species name; the same names are used for the species list in Appendix B. tbabundance.txt is a tab-delimited text file with two columns. The first row is column headings. Each row is a sample and all samples are in the dataset. elevation(m) is the elevation of the site, in meters, and can be used to group samples by site. abundance is the total number of ant workers in the sample. tbenvvars.txt is a tab-delimited text file with 18 columns. The first row is column headings. Each row is a site and there are seven sites in the dataset. Elevation(m) is the elevation of the site, in meters. MeanLog(abundance+1) is the mean of Log(abundance+1) where abundance is the total number of ant workers in the sample. Mean(SpeciesDensity) is the mean of number of species per sample. Sobs(MaoTau) is the observed species richness across all samples at a site, rarefied to 1170 species occurrences at the five lowest sites. ICEMean is the Incidence-based Coverage Estimator of asymptotic species richness, rarefied to 1170 species occurrences at the five lowest sites. MDE2900 is the mid-domain effect prediction using an upper bound of 2900m, rarefied to 1170 species occurrences at the five lowest sites. MDE2050 is the mid-domain effect prediction using an upper bound of 2050m, rarefied to 1170 species occurrences at the five lowest sites. Log(Area) is the log-transformed elevation-specific regional area, estimated from a digital elevation model as the proportional area in each 100 m elevation band on the Atlantic slope of Costa Rica. Rain(mm) is estimated annual rainfall. MeanRH is estimated relative humidity. MeanTemp is mean daily average temperature. MinTemp is mean daily minimum temperature. MaxTemp is mean daily maximum temperature. SoilN is soil nitrogen level. SoilP is soil phosphorus level. AlphaMean is Fisher's Alpha diversity index, calculated using EstimateS 8.0 and rarefied to 1170 species occurrences at the five lowest sites. ShannonMean is the exponential Shannon diversity index, calculated using EstimateS 8.0 and rarefied to 1170 species occurrences at the five lowest sites. SimpsonMean is the Simpson diversity index, calculated using EstimateS 8.0 and rarefied to 1170 species occurrences at the five lowest sites.
DOI: 10.17632/fcgm3chfff
title: Data repository for Camargo, et. al. A comprehensive, open-source dataset of lower limb biomechanics. Part 1 of 3

description: For more information and download with a Dropbox mirror, visit http://www.epic.gatech.edu/opensource-biomechanics-camargo-et-al/
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Part 1/3 of the dataset for "Camargo, et. al. A comprehensive, open-source dataset of lower limb biomechanics in multiple conditions of stairs, ramps, and level-ground ambulation and transitions." Dataset linked from: https://doi.org/10.1016/j.jbiomech.2021.110320 (2021-02-24)
DOI: 10.17632/xzyx7pbr3w
title: The Freshness of the Fish Eyes Dataset

description: The Freshness of the Fish Eyes (FFE) dataset is a dataset for classifying freshness of fish based on eye images. This dataset consists of 4392 images of fish eyes, consisting of eight fish species; each species consists of highly fresh (day 1 and 2), fresh (day 3 and 4), and not fresh (day 5 and 6). The eight fish species as follows Chanos Chanos (500 images), Johnius Trachycephalus (240 images), Nibea Albiflora (421 images), Rastrelliger Faughni (769 images), Upeneus Moluccensis (792 images), Eleutheronema Tetradactylum (240 images), Oreochromis Mossambicus (625 images), and Oreochromis Niloticus (805 images). Each species is divided into three levels of freshness so that all 24 classes. The number of images for each class varies as follows: Chanos Chanos (168, 162, 170 images), Johnius Trachycephalus (80, 80, 80 images), Nibea Albiflora (173, 125, 123 images), Rastrelliger Faughni (336, 216, 217 images ), Upeneus Moluccensis (310, 252, 230 images), Eleutheronema Tetradactylum (80, 80, 80 images), Oreochromis Mossambicus (289, 174, 162 images), and Oreochromis Niloticus (328, 231, 246 images).

For use this dataset, please cite this related article:
Prasetyo, E., Purbaningtyas, R., Adityo, R.D., Suciati, N., & Fatichah, C. (2022). Combining MobileNetV1 and Depthwise Separable Convolution Bottleneck with Expansion for Classifying the Freshness of Fish Eyes. Information Processing in Agriculture. https://doi.org/10.1016/j.inpa.2022.01.002
DOI: 10.6084/m9.figshare.15066180.v1
title: Supplementary Material for: Role of Up-Front Primary Tumor Resection and Tumor Sidedness in the Survival of Synchronous Metastatic Colon Cancer Patients

description: <b><i>Introduction:</i></b> Uncertainty exists about a possible survival benefit of primary tumor resection (PTR) in synchronous metastatic colon cancer (mCC). Since sidedness of the primary tumor is regarded as an important prognostic factor, our objective was to study the interaction between PTR and sidedness in synchronous mCC. <b><i>Methods:</i></b> In this retrospective study, we used data from 2 first-line phase 3 randomized controlled trials (RCTs). A mixed Cox regression model was used to study the multiplicative interaction between PTR and sidedness. We adjusted for age, treatment arm, WHO performance status, number of affected organs by metastases, serum lactate dehydrogenase, and year of enrollment. <b><i>Results:</i></b> We found that PTR is associated with better survival in both right-sided (hazard ratio [HR] 0.59 [95% confidence interval 0.42–0.8 2]) and left-sided mCC (HR 0.70 [95% confidence interval 0.52–0.93]). The interaction between PTR and sidedness was not significant (<i>p</i> = 0.45). <b><i>Conclusion:</i></b> Our data suggest that the prognostic value of PTR is independent of sidedness. Validation of these results will be performed in ongoing RCTs.
DOI: 10.6084/m9.figshare.1539536.v3
title: Names, Drugs and Compounds

description: Short report on drug namespace
DOI: 10.6084/m9.figshare.24609147.v1
title: Effects of <i>Meloidogyne enterolobii</i> and <i>Meloidogyne javanica</i> initial population density (Pi) on potato cultivars’ plant height (PH), stem diameter (SD), chlorophyll content (CC), fresh weight (FW), dry weight (DW), tuber number (TN) and tuber weight (TW) at 56 days after inoculation under net house conditions.

description: Potato (<i>Solanum tuberosum</i> L.) is a well-known food crop that is regarded as an important component in the worldwide battle against hunger and malnutrition. Root-knot nematodes (RKN), <i>Meloidogyne</i> species, are a serious limitation in the potato industry. Potato, being a tuberous crop, yield reduction is mainly due to tuber quality and quantity. In order to evaluate the response of five commercial potato cultivars, <i>viz</i>, ‘Buffelspoort 1’, ‘Hertha’, ‘Larnoma’, ‘Mnandi’ and ‘Up-to-date’ to two RKN species, <i>viz</i>, <i>M. enterolobii</i> and <i>M. javanica</i>; pot experiments were conducted under net house conditions. Ten separate experiments, each with treatments: 0, 500, 1500, 2500 and 3500 eggs + second-stage juveniles (J2), were arranged in a randomized complete block design (RCBD) with five replicates. Fifty-six days after inoculation, nematode effect on plant yield was evaluated. Potato tubers were assessed for root galls and nematodes reproductive factor (RF) was computed. There were significant differences amongst treatments on the following potato growth parameters: plant height, stem diameter, chlorophyll content, number of tubers and tuber weight in both <i>M. enterolobii</i> and <i>M. javanica</i> (P ≤ 0.05). The RF was above unity (one) in all potato cultivars for both <i>M. enterolobii</i> and <i>M. javanica</i>; with <i>M. enterolobii</i> showing more aggressiveness compared to <i>M. javanica</i>. Further, cultivars ‘Buffelspoort 1’ and ‘Hertha’ showed the highest susceptibility, whilst cultivar ‘Mnandi’ showed the least susceptibility. Infection of potato cultivars by the nematodes had severe effects on growth parameters of all the cultivars. Results suggested that all five commercial potato cultivars were susceptible to <i>M. enterolobii</i> and <i>M. javanica</i>. Thus, there is an urgent need for RKN management intervention in the aforementioned cultivars.
DOI: 10.6084/m9.figshare.24948975.v1
title: Raw data and processed data for:Functional composition outweighs taxonomic and functional diversity in maintaining ecosystem properties and processes of mangrove forests

description: These Excel sheets contain raw data and processed data for biodiversity, environmental variables, sediment ecosystem properties, and processes. The processed data consists of standardized (Z-score) values for all variables derived from the raw data used in this study to support the results. The metadata is included herein.
DOI: 10.6084/m9.figshare.25380379.v1
title: Data Set on Partisan Polarization in European Countries Between 2002 and 2022

description: This data set includes two partisan polarization indices composed from European Social Survey data, named PPI(identifiers) and PPI(voters), according to Patkós (2023), using the EGOV dataset (Patkós & Plesz, 2021, 2022). According to Patkós (2023), partisan polarization indicates the extent to which the political life of a community can be described as a battle between two partisan sides. Based on this notion, it calculates partisan polarization based on respondents’ satisfaction with their national government, by comparing the average satisfaction of cabinet supporters (who evaluate the government as a part of their in-group) to the average satisfaction of opposition supporters (who evaluate the government as a part of their out-group) for each country case. Please consult the below sources for details on the measurement and calculation, and please use the applicable citations when referring to the data as appropriate.European Social Survey. (2023). ESS 1-10, European Social Survey Cumulative File, Study Description. Bergen: NSD - Norwegian Centre for Research Data for ESS ERIC. doi:10.21338/NSD-ESS-CUMULATIVE. (please specify data edition)Patkós, V. (2023). Measuring partisan polarization with partisan differences in satisfaction with the government: The introduction of a new comparative approach. Quality & Quantity, 57(1), 39–57.Patkós, V., & Plesz, B. (2021). European Government-Opposition Voters (EGOV) Data Set. 1. https://doi.org/DOI:10.6084/m9.figshare.14061152Patkós, V., & Plesz, B. (2022). The European Government-Opposition Voter (EGOV) Data Set: Data on the government-opposition status of European voters and party identifiers. Intersections. East European Journal of Society and Politics, 8(1), 213–217.
DOI: 10.6084/m9.figshare.29090960.v1
title: Raw experimental data for " Evaluating the potential of Schistosoma mansoni Soluble egg antigen (SEA) and Glycoproteins (IPSE and Omega-1) in Inhibiting the Progression of Type 1 Diabetes ".xlsx

description: This dataset contains the raw experimental data underlying the manuscript titled “Evaluating the potential of Schistosoma mansoni Soluble egg antigen (SEA) and Glycoproteins (IPSE and Omega-1) in Inhibiting the Progression of Type 1 Diabetes . The data include measurements of blood glucose levels, body weight, and cytokine concentrations (interferon-gamma [IFN-γ] and interleukin-4 [IL-4]) collected at four distinct time points throughout the study. Additionally, the dataset provides calculated relative changes in blood glucose and cytokine levels over time.These data were generated to assess the physiological and immunological responses in the experimental model, supporting the analysis and conclusions presented in the associated manuscript. The dataset is provided in a structured format suitable for reanalysis and verification, promoting transparency and reproducibility.
DOI: 10.25452/figshare.plus.24681048.v1
title: File 26_mox files fast speed.

description: This data belongs to a manuscript submitted to Data in Brief, in which the content and lay-out of this data is described in detail. Data overviews (including figures and tables for age and gender groups) can be found at OSF | Normative 3D gait data of healthy subjects walking at three different speeds on an instrumented treadmill in virtual reality.A normative gait dataset of 246 healthy adults (122 men / 124 women, range in age 18-91 years, body weight 46.80-116.10 kg, height 1.53-1.97 m and BMI 18.25-35.63 kg/m<sup>2</sup>) is presented and publicly shared for three walking speed conditions.Three dimensional gait analysis was performed at the Computer Assisted Rehabilitation Environment (CAREN) at the Maastricht University Medical Centre (MUMC+). Subjects walked on the instrumented treadmill surrounded with twelve 3D cameras, three 2D cameras and a virtual environment projected on a 180° screen using the Human Body Lower Limb Model with trunk markers (HBM-II) as biomechanical model.Subjects walked at comfortable walking speed, 30% slower and 30% faster. These walking speed conditions were applied in a random sequence. Comfortable walking speed was determined using a RAMP protocol: subjects started to walk at 0.5 m/s and every second the speed was increased wit 0.01 m/s until comfortable speed was reached. The average of three repetitions was considered the comfortable speed. For each walking speed condition, 250 steps were recorded.The 3D gait data was collected using the D-flow CAREN software. Raw data were processed in Matlab (Mathworks 2016), including quality check, step determination and the exportation of data to xls. Processed data includes spatiotemporal parameters, medio-lateral (ML) and back-forward (BF) margins of stability (MoS), 3D joint angles, anterior-posterior (AP) and vertical GRFs, 3D joint moments and 3D joint power of both legs.The attached files include he raw data presented as .mox files for each adult for walking at fast (comfortable + 30%) speed. The .mox files contain subject data (e.g. gender, body mass, knee and ankle width), marker position and force plate data, kinematic data (joint angles), kinetic data (GRF, joint moment, joint power) generated by CAREN software (D-flow).The title of this file (26_mox files) corresponds to the associated manuscript (submitted to Data in Brief).
DOI: 10.6084/m9.figshare.10007708.v3
title: Supporting information for ''Polyphase mid-latitude glaciation on Mars: chronology of the formation of superposed glacier-like forms from crater-count dating''

description: Supporting information for ''Polyphase mid-latitude glaciation on Mars: chronology of the formation of superposed glacier-like forms from crater-count dating'' <br>A.J.Hepburn (1,2,*), F.S.L.Ng (2,*), S.J.Livingstone (2), T.O.Holt (1), B.Hubbard (1)<br><br>1): Department of Geography and Earth Sciences, Aberystwyth University, Aberystwyth, SY23 3DB, UK<br>2): Department of Geography, University of Sheffield, Sheffield, S10 2TN, UK<br>Corresponding authors (*): adh28@aber.ac.ukf.ng@sheffield.ac.uk <br><br>Contained within this folder are shapefiles, and data tables derived from Hepburn et al 20XX<br><br><br><br>%%%%%%%%%%%%%%%%<br>SGLF_global.shp<br>ESRI standard shapefile format<br>The boundaries for all 320 superposed glacier-like forms (SGLFs) described in this study, all projected to the Mars2000 equicylindircal projection system. <br>The field 'Sinu_area' lists the area (km^2) of each SGLF derived from a sinusoidal projection system of these polygons.<br>The field 'Glob_ID' refers to each unique SGLF idea, as listed in table1.xlsx (this repository).<br>%%%%%%%%%%%%%%%%<br>Craters.shp <br>ESRI standard shapefile<br>The diameter of all craters mapped in this study, on both SGLFs and their underlying VFFs. Projection system is 'SimpleCylindrical_Mars'<br><br>%%%%%%%%%%%%%%%%<br>Data_file_S1.xlsx<br>Excel file listing the inventory of SGLFs and their morphometric characteristics <br><br><br>%%%%%%%%%%%%%%%%<br>Data_File_S2.xlsx<br>Excel file listing the counting area and crater counts in different crater diameter bins on each SGLF aggregate (Sheet 1) and its underlying VFF (Sheet 2). <br><br> <br>
DOI: 10.6084/m9.figshare.19175675.v1
title: PGC3_SCZ_wave3_public.v2_sort.bb

description: Psychiatric Genomics Consortium<br>Wave 3 Schizophrenia GWAS Metaanalysis<br>Summary Statistics <br>BigBed for UCSC track hub<br>
DOI: 10.6084/m9.figshare.21875280.v3
title: frankliniella occidentalis(Pergande) occurrence.xlsx

description: Species distribution points of frankliniella occidentalis(Pergande)ion points of western flower thrips
DOI: 10.6084/m9.figshare.6193103.v2
title: A dataset of camera and sonar images

description: A dataset of camera and sonar images of fishes in an aquarium.
DOI: 10.6084/m9.figshare.8216678.v1
title: Evaluation of Architectural Attributes' Weight in Inter-case Similarity Calculation

description: This dataset is about the importance of twenty-eight architectural attributes in inter-case similarity calculation. Their importance is evaluated by forty-five professional participants who are architect, architectural teacher, and graduate student of architecture.
DOI: 10.17632/n9cn3hdc33
title: neutron diffraction structure factor of Mg66Zn30Ca4

description: Neutron diffraction dataset used for rmc modelling.
DOI: 10.6084/m9.figshare.14035175.v1
title: LUDB annotations

description: New delineations performed on the Lobachevsky University Electrocardiography Database
DOI: 10.6084/m9.figshare.14424188.v1
title: Table 1 and 2 Supplements.docx

description: Table 1. Data represents functional electrical stimulation leg cycling oxygen uptake in persons with spinal cord injury following 12-16 weeks of either electrically evoked resistance training or passive movement training. Table 2 Mitochondrial respiration rates of different complexes following either electrically evoked resistance training or passive movement training in persons with spinal cord injury.
DOI: 10.6084/m9.figshare.17143865.v1
title: Database, online items and scripts from ‘InvitroSPI and a large database of proteasome-generated spliced and non-spliced peptides’

description: Manuscript abstract Noncanonical epitopes presented by Human Leucocyte Antigen class I (HLA-I) complexes to CD8+ T cells attracted the spotlight in the research of novel immunotherapies against cancer, infection and autoimmunity. Proteasomes, which are the main producers of HLA-I-bound antigenic peptides, can catalyze both peptide hydrolysis and peptide splicing. The prediction of proteasome-generated spliced peptides is an objective that still requires a reliable (and large) database of non-spliced and spliced peptides produced by these proteases. Here, we present an extended database of proteasome-generated spliced and non-spliced peptides, which was obtained by analyzing <em>in vitro</em> digestions of 80 unique synthetic polypeptide substrates, measured by different mass spectrometers. Peptides were identified through invitroSPI method, which was validated through <em>in silico</em> and <em>in vitro</em> strategies. The peptide product database contains 16,631 unique peptide products (5,493 non-spliced, 6,453 <em>cis</em>-spliced and 4,685 <em>trans</em>-spliced peptide products), and a substrate sequence variety that is a valuable source for predictors of proteasome-catalyzed peptide hydrolysis and splicing. Potential artefacts and skewed results due to different identification and analysis strategies are discussed. <br> File description <br> PBdataset-search-results.zip Mascot search results for the PB dataset, used for invitroSPI analysis of PB dataset. Contains a full list of all PSMs suggested by Mascot. <br> ProteasomeDB.csv Large database of proteasome-generated spliced and non-spliced peptides, generated by invitroSPI analysis of 80 synthetic polypeptide substrates. <br> databases.zip Custom databases used for search of in vitro digestion MS measurements. They contain all theoretically possible spliced and non-spliced peptides that could be derived from a given polypeptide. <br> analysis-scripts-figshare.zip Scripts used for the analysis presented in the corresponding manuscript. <br> invitroPB_scripts.zip Scripts for the invitroPB method. <br> Online-Table 1 Technical details of all 80 synthetic substrates and their measurement. <br> Online-Table 2 PSMs identified in the gp100 Fusion dataset <br> Online-Table 3 PSMs identified in the PB dataset <br> Online-Figure 1 Comparison of measured MS2 spectra of a representative pool of identified non-spliced and spliced peptide products and synthetic peptides derived from the gp100 dataset <br> Online-Figure 2 Comparison of measured and predicted MS2 spectra of non-spliced and spliced peptides identified by invitroSPI method in the PB dataset <br> Online-Figure 3 Comparison of measured and predicted MS2 spectra of non-spliced and spliced peptides identified by invitroPB method in the PB dataset
DOI: 10.6084/m9.figshare.19962383.v1
title: Dyspnea and COVID-19: A Review of Confounding Diagnoses during the Postpartum Period

description: Abstract The puerperium is a complex period that begins with placental delivery and lasts for 6 weeks, during which readaptation of the female organism and redistribution of blood volume occur. This period is conducive to the occurrence of thromboembolic events. In the context of the SARS-CoV-2 pandemic, the virus responsible for COVID-19, the attention of the scientific community and health professionals has been focused on obtaining insights on different aspects of this disease, including etiology, transmission, diagnosis, and treatment. Regarding the pregnancy-postpartum cycle, it is opportune to review the clinical conditions that can occur during this period and to investigate dyspnea as a postpartum symptom in order to avoid its immediate association with COVID-19 without further investigation, which can lead to overlooking the diagnosis of other important and occasionally fatal conditions.
DOI: 10.6084/m9.figshare.21971672.v2
title: Aligned mitochondrial COI sequences of golden mussel Limnoperna fortunei from water samples with a known sequence

description: This dataset contains four mitochondrial COI sequences (Sanger sequencing; 137 bp in length) of golden mussel <em>Limnoperna fortunei</em> resulting from water samples collected from the South-to-North Water Diversion Project during 2016-2017. Sequences are aligned with a known<em> L.fortunei</em> sequence from GenBank (Genbank Accession #: HQ843796.1).
DOI: 10.6084/m9.figshare.25750512.v1
title: CIF files

description: CIF files of crystals
DOI: 10.6084/m9.figshare.26839603.v1
title: Supplementary data for NTCP in rectal cancer

description: Supplementary tables and figures for NTCP in rectal cancer
DOI: 10.6084/m9.figshare.3568938.v1
title: Supplement 1. MATLAB codes for the DEB model for holometabolous insects. Script 1.

description: File List mydata_Venturia_canescens.m (MD5: 023037c245a320ea885da278b32aad32) Description The Matlab file mydata_Venturia_canescens.m contains published data on the energetics of <i>Venturia canescens</i> endoparasitoids: growth trajectories of the larval and pupal stage of the parasitoid, the number of eggs laid by the imago through time, and several lifespan events such as the different developmental times of the parasitoid. This matlab file calls predict_Venturia_canescens.m file (included in the supplement 2) that includes the code to estimate the DEB parameters from the data included in mydata_Venturia_canescens.m file.