cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1411220.v1
title: Combining a Spatial Model and Demand Forecasts to Map Future Surface Coal Mining in Appalachia

description: Input datasets and model results for associated PLOS ONE publication.
DOI: 10.6084/m9.figshare.1411231.v1
title: Persistent outliers among state-level causes of death, 1999-2013

description: This table identifies all state-level causes of death that were at least twice the national rate in each of the periods 1999-2003, 2004-2008, and 2009-2013. Data are based on the 113 Cause of Death list and are based on the CDC's Underlying Cause of Death file accessible at: http://wonder.cdc.gov/ucd-icd10.html.
DOI: 10.6084/m9.figshare.1411229.v1
title: Most distinctive cause of death, by state, 2000-2010

description: This table contains the underlying data used to make the map in the paper, "The most distinctive causes of death by state", published in <em>Preventing Chronic Disease</em> on May 14, 2015. It is a comma-separated file containing the following fields: state, cause of death, number of deaths, state age-adjusted death rate, national age-adjusted death rate, relative risk (i.e. ratio of state-to-national rates), lower 95% confidence level around the relative risk, and upper 95% confidence level around the relative risk.
DOI: 10.6084/m9.figshare.1411215
title: A case of human poisoning by grayanotoxins following honey ingestion: elucidation of the toxin profile by mass spectrometry

description: High-resolution mass spectrometry (HRMS) was applied for the detection of grayanotoxins (GrTx) in a contaminated honey sample. This sample was provided by a hospital due to a suspicion of intoxication after a patient had shown the typical symptoms of GrTx poisoning. Subsequent analysis proved the contamination with high amounts of GrTx and other toxins belonging to grayanane-type diterpenoids. This group of natural toxins is synthesised by the plant family Ericaceae and comprises more than 60 individual toxins, but only one compound is available as a reference standard. We applied a screening approach that easily confirms the presence or absence of GrTx without access to standards. By searching for predictable mass spectrometric fragment ions, including typical in-source fragments arising from collision-induced dissociation during electrospray ionisation, the complete toxin profile was screened and allowed the mass spectrometric identification of 15 individual GrTx. The potential of this approach is especially demonstrated by the fact that at least two of these toxins have not been previously described in the literature. A semi-quantitative estimation indicated a total toxin concentration of 358 mg kg<sup>−1</sup>. An investigation of 49 honeys from the German retail market did not reveal the presence of GrTx.
DOI: 10.6084/m9.figshare.1411231.v3
title: Persistent outliers among state-level causes of death, 1999-2013

description: This table identifies all state-level causes of death that were at least twice the national rate in each of the periods 1999-2003, 2004-2008, and 2009-2013. Data are based on the 113 Cause of Death list and are based on the CDC's Underlying Cause of Death file accessible at: http://wonder.cdc.gov/ucd-icd10.html.
DOI: 10.6084/m9.figshare.1411231.v2
title: Persistent outliers among state-level causes of death, 1999-2013

description: This table identifies all state-level causes of death that were at least twice the national rate in each of the periods 1999-2003, 2004-2008, and 2009-2013. Data are based on the 113 Cause of Death list and are based on the CDC's Underlying Cause of Death file accessible at: http://wonder.cdc.gov/ucd-icd10.html.
DOI: 10.6084/m9.figshare.1411213
title: Effects of steel slag applications on CH<sub>4</sub>, N<sub>2</sub>O and the yields of Indonesian rice fields: a case study during two consecutive rice-growing seasons at two sites

description: The increasing human population requires greater rice production. However, rice cultivation contributes to global warming through greenhouse gas (GHG) emissions. Technologies for reducing GHG emissions in concert with the increased rice production from rice fields are needed. The objectives of this study were to evaluate the effects of steel slag applications on methane (CH<sub>4</sub>) and nitrous oxide (N<sub>2</sub>O) emissions and rice yields. Two study sites were established at the experimental farm belonging to Indonesian Agricultural Environment Research Institute (IAERI) in Jakenan and a farmer’s field in Wedarijaksa sub-district, Indonesia. Both field trials were conducted during the dry season (DS) of 2009 and the rainy season (RS) of 2009/2010. During the DS, a randomized block design was arranged with two treatments (a control and a steel slag application at 1 Mg ha<sup>−1</sup>), which were replicated five times. During the RS, the experimental plot with 1 Mg ha<sup>−1</sup> of steel slag treatment was split into two small sub-plots to accommodate the additional 1 and 2 Mg ha<sup>−1</sup> steel slag treatments. The results showed that there was a decreasing tendency in the CH<sub>4</sub> emissions at both sites and during both seasons after steel slag applications, although there was no statistical significance. During the RS in Jakenan, steel slag applications at rates of 1 and 2 Mg ha<sup>−1</sup> decreased the CH<sub>4</sub> emissions by 9.1 and 10.7%, respectively. In Wedarijaksa, steel slag applications at rates of 1 and 2 Mg ha<sup>−1</sup> decreased the CH<sub>4</sub> emissions by 12.6 to 18.7%, respectively. The N<sub>2</sub>O emissions were decreased by 34 and 38% following slag applications at the 2 Mg ha<sup>−1</sup> rate during the RS in Jakenan and Wedarijaksa, respectively. The iron content of steel slag could be used to reduce not only CH<sub>4</sub> but also N<sub>2</sub>O emissions. Increased level of electron acceptors suppresses CH<sub>4</sub> and N<sub>2</sub>O emissions. The application of steel slag at 1 and 2 Mg ha<sup>−1</sup> increased rice grain yields by approximately 4.8–5.6% in Jakenan and 0.3–4.7% in Wedarijaksa. It might be better to apply steel slag at higher rates for more than two growing seasons to reach reduction in CH<sub>4</sub> and N<sub>2</sub>O emissions.
DOI: 10.6084/m9.figshare.1411214
title: Maize root emergence

description: ## Root emergence data - Genotype:<br>- B73 - Conditions:<br>- Light: 400 PAR<br>- Temperature: 24°C<br>- Day length: 16h - Culture:<br>- Seeds were geminated in petri dishes<br>- Seedling were transferred to the hydroponic setup when the primary roots was 2cm long<br>- Hydroponic with full strength Hoagland solution<br>- Started on the 2015-02-27 - Sampling<br>- plants were taken out of the setup and directed at different times points (see data file for dates)
DOI: 10.6084/m9.figshare.1411214.v1
title: Maize root emergence

description: ## Root emergence data - Genotype:<br>- B73 - Conditions:<br>- Light: 400 PAR<br>- Temperature: 24°C<br>- Day length: 16h - Culture:<br>- Seeds were geminated in petri dishes<br>- Seedling were transferred to the hydroponic setup when the primary roots was 2cm long<br>- Hydroponic with full strength Hoagland solution<br>- Started on the 2015-02-27 - Sampling<br>- plants were taken out of the setup and directed at different times points (see data file for dates)
DOI: 10.6084/m9.figshare.1411215.v2
title: A case of human poisoning by grayanotoxins following honey ingestion: elucidation of the toxin profile by mass spectrometry

description: High-resolution mass spectrometry (HRMS) was applied for the detection of grayanotoxins (GrTx) in a contaminated honey sample. This sample was provided by a hospital due to a suspicion of intoxication after a patient had shown the typical symptoms of GrTx poisoning. Subsequent analysis proved the contamination with high amounts of GrTx and other toxins belonging to grayanane-type diterpenoids. This group of natural toxins is synthesised by the plant family Ericaceae and comprises more than 60 individual toxins, but only one compound is available as a reference standard. We applied a screening approach that easily confirms the presence or absence of GrTx without access to standards. By searching for predictable mass spectrometric fragment ions, including typical in-source fragments arising from collision-induced dissociation during electrospray ionisation, the complete toxin profile was screened and allowed the mass spectrometric identification of 15 individual GrTx. The potential of this approach is especially demonstrated by the fact that at least two of these toxins have not been previously described in the literature. A semi-quantitative estimation indicated a total toxin concentration of 358 mg kg<sup>−1</sup>. An investigation of 49 honeys from the German retail market did not reveal the presence of GrTx.
DOI: 10.6084/m9.figshare.1411229.v2
title: The most distinctive causes of death, by state, 2000-2010 - supporting data

description: This table contains the underlying data used to make the map in the paper, "The most distinctive causes of death by state", published in <em>Preventing Chronic Disease</em> on May 14, 2015. It is a comma-separated file containing the following fields: state, cause of death, number of deaths, state age-adjusted death rate, national age-adjusted death rate, relative risk (i.e. ratio of state-to-national rates), lower 95% confidence level around the relative risk, and upper 95% confidence level around the relative risk.
DOI: 10.6084/m9.figshare.1411215.v1
title: A case of human poisoning by grayanotoxins following honey ingestion: elucidation of the toxin profile by mass spectrometry

description: High-resolution mass spectrometry (HRMS) was applied for the detection of grayanotoxins (GrTx) in a contaminated honey sample. This sample was provided by a hospital due to a suspicion of intoxication after a patient had shown the typical symptoms of GrTx poisoning. Subsequent analysis proved the contamination with high amounts of GrTx and other toxins belonging to grayanane-type diterpenoids. This group of natural toxins is synthesised by the plant family Ericaceae and comprises more than 60 individual toxins, but only one compound is available as a reference standard. We applied a screening approach that easily confirms the presence or absence of GrTx without access to standards. By searching for predictable mass spectrometric fragment ions, including typical in-source fragments arising from collision-induced dissociation during electrospray ionisation, the complete toxin profile was screened and allowed the mass spectrometric identification of 15 individual GrTx. The potential of this approach is especially demonstrated by the fact that at least two of these toxins have not been previously described in the literature. A semi-quantitative estimation indicated a total toxin concentration of 358 mg kg<sup>−1</sup>. An investigation of 49 honeys from the German retail market did not reveal the presence of GrTx.
DOI: 10.6084/m9.figshare.1411229.v4
title: The most distinctive causes of death, by state, 2001-2010 - underlying data

description: This table contains the underlying data used to make the map in the paper, "The most distinctive causes of death by state", published in <em>Preventing Chronic Disease</em> on May 14, 2015. It is a comma-separated file containing the following fields: state, cause of death, number of deaths, state age-adjusted death rate, national age-adjusted death rate, relative risk (i.e. ratio of state-to-national rates), lower 95% confidence level around the relative risk, and upper 95% confidence level around the relative risk.
DOI: 10.6084/m9.figshare.1411163
title: ESM Appendix B: Tseng ZJ and Flynn JJ. An integrative method for testing form–function linkages and reconstructed evolutionary pathways of masticatory specialization. Journal of the Royal Society Interface

description: Finite element (FE) models of terminal, internal, and theoretical nodal skulls used in biting simulations. All models are loaded with boundary conditions and material properties described in the study. Models are in Strand7 (*.st7) format; additional formats available upon request.
DOI: 10.6084/m9.figshare.1411229.v3
title: The most distinctive causes of death, by state, 2000-2010 - underlying data

description: This table contains the underlying data used to make the map in the paper, "The most distinctive causes of death by state", published in <em>Preventing Chronic Disease</em> on May 14, 2015. It is a comma-separated file containing the following fields: state, cause of death, number of deaths, state age-adjusted death rate, national age-adjusted death rate, relative risk (i.e. ratio of state-to-national rates), lower 95% confidence level around the relative risk, and upper 95% confidence level around the relative risk.
DOI: 10.6084/m9.figshare.1411146
title: plos-datasets

description: Datasets for "Weighted Statistical Binning: enabling statistically consistent genome-scale phylogenetic analyses"<br>Md. Shamsuzzoha Bayzid, Siavash Mirarab, Bastien Boussau and Tandy Warnow, PLoS ONE, 2015.
DOI: 10.6084/m9.figshare.1411213.v1
title: Effects of steel slag applications on CH<sub>4</sub>, N<sub>2</sub>O and the yields of Indonesian rice fields: a case study during two consecutive rice-growing seasons at two sites

description: The increasing human population requires greater rice production. However, rice cultivation contributes to global warming through greenhouse gas (GHG) emissions. Technologies for reducing GHG emissions in concert with the increased rice production from rice fields are needed. The objectives of this study were to evaluate the effects of steel slag applications on methane (CH<sub>4</sub>) and nitrous oxide (N<sub>2</sub>O) emissions and rice yields. Two study sites were established at the experimental farm belonging to Indonesian Agricultural Environment Research Institute (IAERI) in Jakenan and a farmer’s field in Wedarijaksa sub-district, Indonesia. Both field trials were conducted during the dry season (DS) of 2009 and the rainy season (RS) of 2009/2010. During the DS, a randomized block design was arranged with two treatments (a control and a steel slag application at 1 Mg ha<sup>−1</sup>), which were replicated five times. During the RS, the experimental plot with 1 Mg ha<sup>−1</sup> of steel slag treatment was split into two small sub-plots to accommodate the additional 1 and 2 Mg ha<sup>−1</sup> steel slag treatments. The results showed that there was a decreasing tendency in the CH<sub>4</sub> emissions at both sites and during both seasons after steel slag applications, although there was no statistical significance. During the RS in Jakenan, steel slag applications at rates of 1 and 2 Mg ha<sup>−1</sup> decreased the CH<sub>4</sub> emissions by 9.1 and 10.7%, respectively. In Wedarijaksa, steel slag applications at rates of 1 and 2 Mg ha<sup>−1</sup> decreased the CH<sub>4</sub> emissions by 12.6 to 18.7%, respectively. The N<sub>2</sub>O emissions were decreased by 34 and 38% following slag applications at the 2 Mg ha<sup>−1</sup> rate during the RS in Jakenan and Wedarijaksa, respectively. The iron content of steel slag could be used to reduce not only CH<sub>4</sub> but also N<sub>2</sub>O emissions. Increased level of electron acceptors suppresses CH<sub>4</sub> and N<sub>2</sub>O emissions. The application of steel slag at 1 and 2 Mg ha<sup>−1</sup> increased rice grain yields by approximately 4.8–5.6% in Jakenan and 0.3–4.7% in Wedarijaksa. It might be better to apply steel slag at higher rates for more than two growing seasons to reach reduction in CH<sub>4</sub> and N<sub>2</sub>O emissions.
DOI: 10.6084/m9.figshare.1411146.v1
title: plos-datasets

description: Datasets for "Weighted Statistical Binning: enabling statistically consistent genome-scale phylogenetic analyses"<br>Md. Shamsuzzoha Bayzid, Siavash Mirarab, Bastien Boussau and Tandy Warnow, PLoS ONE, 2015.
DOI: 10.6084/m9.figshare.1411213.v2
title: Effects of steel slag applications on CH<sub>4</sub>, N<sub>2</sub>O and the yields of Indonesian rice fields: a case study during two consecutive rice-growing seasons at two sites

description: The increasing human population requires greater rice production. However, rice cultivation contributes to global warming through greenhouse gas (GHG) emissions. Technologies for reducing GHG emissions in concert with the increased rice production from rice fields are needed. The objectives of this study were to evaluate the effects of steel slag applications on methane (CH<sub>4</sub>) and nitrous oxide (N<sub>2</sub>O) emissions and rice yields. Two study sites were established at the experimental farm belonging to Indonesian Agricultural Environment Research Institute (IAERI) in Jakenan and a farmer’s field in Wedarijaksa sub-district, Indonesia. Both field trials were conducted during the dry season (DS) of 2009 and the rainy season (RS) of 2009/2010. During the DS, a randomized block design was arranged with two treatments (a control and a steel slag application at 1 Mg ha<sup>−1</sup>), which were replicated five times. During the RS, the experimental plot with 1 Mg ha<sup>−1</sup> of steel slag treatment was split into two small sub-plots to accommodate the additional 1 and 2 Mg ha<sup>−1</sup> steel slag treatments. The results showed that there was a decreasing tendency in the CH<sub>4</sub> emissions at both sites and during both seasons after steel slag applications, although there was no statistical significance. During the RS in Jakenan, steel slag applications at rates of 1 and 2 Mg ha<sup>−1</sup> decreased the CH<sub>4</sub> emissions by 9.1 and 10.7%, respectively. In Wedarijaksa, steel slag applications at rates of 1 and 2 Mg ha<sup>−1</sup> decreased the CH<sub>4</sub> emissions by 12.6 to 18.7%, respectively. The N<sub>2</sub>O emissions were decreased by 34 and 38% following slag applications at the 2 Mg ha<sup>−1</sup> rate during the RS in Jakenan and Wedarijaksa, respectively. The iron content of steel slag could be used to reduce not only CH<sub>4</sub> but also N<sub>2</sub>O emissions. Increased level of electron acceptors suppresses CH<sub>4</sub> and N<sub>2</sub>O emissions. The application of steel slag at 1 and 2 Mg ha<sup>−1</sup> increased rice grain yields by approximately 4.8–5.6% in Jakenan and 0.3–4.7% in Wedarijaksa. It might be better to apply steel slag at higher rates for more than two growing seasons to reach reduction in CH<sub>4</sub> and N<sub>2</sub>O emissions.
DOI: 10.6084/m9.figshare.1411145
title: mammalian

description: mammalian simulated datasets (250bp)
DOI: 10.6084/m9.figshare.1411143
title: Cuke Particle Positions - 1998-2007 - Grid sites (seasonal supplement)

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released. These are a supplement to the main grid data set (http://dx.doi.org/10.6084/m9.figshare.1405701) with bi-weekly releases from Jan 1 to Aug 27.
DOI: 10.6084/m9.figshare.1411163.v1
title: ESM Appendix B: Tseng ZJ and Flynn JJ. An integrative method for testing form–function linkages and reconstructed evolutionary pathways of masticatory specialization. Journal of the Royal Society Interface

description: Finite element (FE) models of terminal, internal, and theoretical nodal skulls used in biting simulations. All models are loaded with boundary conditions and material properties described in the study. Models are in Strand7 (*.st7) format; additional formats available upon request.
DOI: 10.6084/m9.figshare.1411145.v1
title: mammalian

description: mammalian simulated datasets (250bp)
DOI: 10.6084/m9.figshare.1411137
title: 15-taxon

description: 15-taxon simulated datasets
DOI: 10.6084/m9.figshare.1411138
title: readme

description: file contents
DOI: 10.6084/m9.figshare.1411213.v3
title: Effects of steel slag applications on CH<sub>4</sub>, N<sub>2</sub>O and the yields of Indonesian rice fields: a case study during two consecutive rice-growing seasons at two sites

description: The increasing human population requires greater rice production. However, rice cultivation contributes to global warming through greenhouse gas (GHG) emissions. Technologies for reducing GHG emissions in concert with the increased rice production from rice fields are needed. The objectives of this study were to evaluate the effects of steel slag applications on methane (CH<sub>4</sub>) and nitrous oxide (N<sub>2</sub>O) emissions and rice yields. Two study sites were established at the experimental farm belonging to Indonesian Agricultural Environment Research Institute (IAERI) in Jakenan and a farmer’s field in Wedarijaksa sub-district, Indonesia. Both field trials were conducted during the dry season (DS) of 2009 and the rainy season (RS) of 2009/2010. During the DS, a randomized block design was arranged with two treatments (a control and a steel slag application at 1 Mg ha<sup>−1</sup>), which were replicated five times. During the RS, the experimental plot with 1 Mg ha<sup>−1</sup> of steel slag treatment was split into two small sub-plots to accommodate the additional 1 and 2 Mg ha<sup>−1</sup> steel slag treatments. The results showed that there was a decreasing tendency in the CH<sub>4</sub> emissions at both sites and during both seasons after steel slag applications, although there was no statistical significance. During the RS in Jakenan, steel slag applications at rates of 1 and 2 Mg ha<sup>−1</sup> decreased the CH<sub>4</sub> emissions by 9.1 and 10.7%, respectively. In Wedarijaksa, steel slag applications at rates of 1 and 2 Mg ha<sup>−1</sup> decreased the CH<sub>4</sub> emissions by 12.6 to 18.7%, respectively. The N<sub>2</sub>O emissions were decreased by 34 and 38% following slag applications at the 2 Mg ha<sup>−1</sup> rate during the RS in Jakenan and Wedarijaksa, respectively. The iron content of steel slag could be used to reduce not only CH<sub>4</sub> but also N<sub>2</sub>O emissions. Increased level of electron acceptors suppresses CH<sub>4</sub> and N<sub>2</sub>O emissions. The application of steel slag at 1 and 2 Mg ha<sup>−1</sup> increased rice grain yields by approximately 4.8–5.6% in Jakenan and 0.3–4.7% in Wedarijaksa. It might be better to apply steel slag at higher rates for more than two growing seasons to reach reduction in CH<sub>4</sub> and N<sub>2</sub>O emissions.
DOI: 10.6084/m9.figshare.1411137.v1
title: 15-taxon

description: 15-taxon simulated datasets
DOI: 10.6084/m9.figshare.1411138.v1
title: readme

description: file contents
DOI: 10.6084/m9.figshare.1411143.v1
title: Cuke Particle Positions - 1998-2007 - Grid sites (seasonal supplement)

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released. These are a supplement to the main grid data set (http://dx.doi.org/10.6084/m9.figshare.1405701) with bi-weekly releases from Jan 1 to Aug 27.