cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/pg2djw3sjc
title: Dataset: Impact of pulsed-wave-Doppler velocity-envelope extraction techniques on classification of complete fetal cardiac cycles

description: The pulsed-wave Doppler (PWD) signal is used as a reference for the mechanical activity of the heart and several validated parameters are used in clinical practice, most of which are evaluated by cardiologists based on visual inspection alone. Specific datasets have also been established of the simultaneous recordings of Doppler ultrasound and fetal electrocardiography. These all require the development of software tools that can automatically identify complete and meaningful fetal cardiac cycles to enable measurements. Several works in the literature have reported investigations of the extraction of the PWD velocity envelopes. The work "Impact of pulsed-wave-Doppler velocity-envelope tracing techniques on classification of complete fetal cardiac cycles", by the same authors, focus on the selection and comparison of different steps in the signal processing chain that lead to the PWD envelopes, which are used as inputs for the detection of complete heartbeats. Here, we presents the dataset that has been used for the validation of the methodology. The data were collected from the fetal echocardiographic examination of 25 low-risk pregnant volunteers at gestational weeks ranging from the 21st to the 27th, from which we obtained a total of 43 PWD traces. All images and data are anonymous. The PWD images were collected at the Division of Pediatric Cardiology, San Michele Hospital, Cagliari, Italy. The study was approved by the Independent Ethics Committee of the Cagliari University Hospital (AOU Cagliari) and performed following the principles outlined in the Helsinki Declaration of 1975, as revised in 2000. Each volunteer signed a form acknowledging their informed consent to the research protocol. Based on the best clinical practice, we chose the five-chamber apical window. Using the apical five-chamber view, the four cardiac chambers and the first part of the aorta (assumed as a fifth chamber) can be investigated, and the diastolic and systolic functions have distinguishable morphologies in the PWD spectrum. Overall, the EA-wave indicates the mitral inflow and the V-wave the aortic outflow. Here, the 43 images, named as imgXX.bmp. An expert pediatric cardiologist labeled all the complete and measurable fetal cardiac cycles using a custom MATLAB graphical interface, as described in "Automatic detection of complete and measurable cardiac cycles in antenatal pulsed-wave Doppler signals". The annotations are saved in the annotations.mat file, that that consists of 2 columns: the first lists the image indexes at which the cardiologist annotated the fetal cardiac cycle onset, the second specifies the image number at which the annotation is related to. A MATLAB function allows visualizing the cardiologiest's annotations on a selected PWD image or all the cardiologiest's annotations in every PWD images in the dataset.
DOI: 10.6084/m9.figshare.19137785.v2
title: CODCLAB_others

description: CODCLAB_Level0 Basic geographic information data contains lake basin boundary, lake max extent, lake sub-basin boundary, and national lake zones. <br> CODCLAB_1 km CODCLAB_1 km is a unified spatial-temporal resolution dataset (with the lowest temporal resolution and 1 km spatial resolution ) resampled from CODCLAB_Level 1 <br> CODCLAB_sub-basins CODCLAB of sub-basins for five large lakes (ID39, ID110,ID131,ID330 and ID533). <br> CODCLAB_custom code Customized batch steps of reprocessing data, including lake area extraction and raster attribute extraction, were programmed using Python 2.7 scripts which were provided in our data set named ‘Lake_area_extraction.py’ and ‘Raster_attribute_ extraction.py’, respectively. <br> CODCLAB_readme Data description document
DOI: 10.6084/m9.figshare.25975267.v1
title: Supplementary Material for: Carbapenem-resistant Enterobacteriaceae colonization or infection were not associated with post liver transplant graft failure: an observational cohort

description: Introduction
Carbapenem-resistant Enterobacteriaceae (CRE) epidemiology among liver transplant (LT) recipients is variable. We studied CRE colonization and infection impact on LT recipients’ outcomes.

Methods
Observational cohort study including consecutive adult LT recipients between January 2019 and December 2020 at Curry Cabral Hospital, Lisbon, Portugal. Primary exposures were CRE colonization (rectal swabs under screening program) and infection within one year of index LT. Primary endpoint was graft failure within one year of the index LT. 

Results
Among 209 patients, median (IQR) age was 57 (47-64) years and 155 (74.2%) were males. CRE colonization was identified in 28 (13.4%) patients during the first year post transplant (median (IQR) number of rectal swabs per patient of 4 (2-7)). CRE resistance genes identified were: OXA48 in 8 (3.6%), KPC in 19 (67.9%), and VIM in 1 (3.6%) patients. Any and CRE infections were diagnosed in 88 (42.1%) and 6 (2.9%) patients, respectively, during the first year post transplant. After adjusting for confounders, neither CRE colonization (aOR (95%CI)=1.83 (0.71-4.70);P=0.21) nor infection (aOR (95%CI)=1.35 (0.17-11.06);P=0.78) were associated with graft failure within one year of index LT. 

Discussion/Conclusion
Under a screening program, CRE colonization and infection prevalence was low and neither was associated with graft failure.
DOI: 10.6084/m9.figshare.7130402.v1
title: Yurkowski et al. 2018 - Arctic Hotspots DDI shapefiles.zip

description: These filesets support data from the following paper published in <i>Diversity and Distributions</i>:<br><b>Abundance and species diversity hotspots of tracked marine predators across the North American Arctic</b><br><br>DOI: 10.1111/ddi.12860<br>These filesets are GIS shapefiles (WGS84 projection) which contain the Getis-Ord Gi* analysis outputs for abundance densities and hotspots by species group and abundance and species diversity densities and hotspots across species groups by season.<br>Species groups<br>"CP" - cetaceans and pinnipeds"SB" - seabirds"PB" - polar bears<br>Headings<br>"FID" - grid cell number<br>"Count_PTT" - number of unique individuals"Count_Spec" - number of unique species<br>"GiZScore" - Getis-Ord Z score"GiPValue" - Getis-Ord P-value"Gi_Bin" - statistically significant hotspots at a=0.90 (1), 0.95 (2) and 0.99 (3) levels. Statistically significant coldspots at a=0.90 (-1), 0.95 (-2) and 0.99 (-3) levels. A score of 0 is non-significant. <br><br>See the following link for more details on Getis-Ord Gi* output from ArcGIS: http://desktop.arcgis.com/en/arcmap/10.3/tools/spatial-statistics-toolbox/hot-spot-analysis.htm<br><br>
DOI: 10.6084/m9.figshare.28267028.v1
title: Data for "Towards measurements of absolute membrane potential in Bacillus subtilis using fluorescence lifetime"

description: Data associated with "Towards measurements of absolute membrane potential in Bacillus subtilis using fluorescence lifetime"Biophysical Reports, Volume 5, Issue 1, 2025, 100196, ISSN 2667-0747https://doi.org/10.1016/j.bpr.2025.100196Debjit Roy<sup>1,2</sup>, Xavier Michalet*<sup>2,5</sup>, Evan W. Miller<sup>3</sup>, Kiran Bharadwaj<sup>1,2</sup>, Shimon Weiss*<sup>1,2,4,5,6</sup><sup>1</sup>UCLA-DOE Institute for Genomics and Proteomics, Department of Biological Chemistry, University of California at Los Angeles, Los Angeles, California<sup>2</sup>Department of Chemistry and Biochemistry, University of California at Los Angeles, Los Angeles, California<sup>3</sup>Departments of Chemistry, Molecular and Cell Biology, Helen Wills Neuroscience Institute, University of California at Berkeley, Berkeley, California<sup>4</sup>Department of Physiology, University of California at Los Angeles, Los Angeles, California<sup>5</sup>California Nano Systems Institute, University of California at Los Angeles, Los Angeles, California<sup>6</sup>Department of Physics, Institute for Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan, IsraelFor more information contact: Debjit Roy: deb9804@g.ucla.edu/Xavier Michalet: michalet@chem.ucla.edu/Shimon Weiss: sweiss@chem.ucla.edu
DOI: 10.6084/m9.figshare.1615057.v1
title: DoOP chordate v1.1 dataset

description: Promoter sequences, alignments and conserved motifs for the DoOP database, chordate section, v1.1.
DOI: 10.6084/m9.figshare.28826414.v3
title: Contact Observations from an Intensive Care Unit - Supplementary

description: Little fine-grained, empirical motion and interaction data is available for working hospital environments (refer to our paper for more information)
DOI: 10.6084/m9.figshare.29078294.v1
title: Raw data for locus: Dero_C12F_B02R

description: Raw data for calls locus: Dero_C12F_B02R (see Piaggio et al. 2008)
DOI: 10.6084/m9.figshare.5128132.v1
title: Supplementary Material for: The Effectiveness of a Patient-Centred Assessment with a Solution-Focused Approach (DIALOG+) for Patients with Psychosis: A Pragmatic Cluster-Randomised Controlled Trial in Community Care

description: <b><i>Background:</i></b> DIALOG+ was developed as a computer-mediated intervention, consisting of a structured assessment of patients' concerns combined with a solution-focused approach to initiate change. This study tested the effectiveness of DIALOG+ in the community treatment of patients with psychosis. <b><i>Method:</i></b> This was a pragmatic, exploratory, parallel-group, cluster-randomised controlled trial. Clinicians within community teams - along with patients with psychosis under their care - were randomised to use DIALOG+ once per month for 6 months or an active control. The primary outcome (subjective quality of life, SQOL) and secondary outcomes were assessed after 3, 6 and 12 months by blinded assessors and analysed using mixed-effect models. <b><i>Results:</i></b> A total of 49 clinicians and 179 patients were randomised. Implementation of DIALOG+ was variable, with an average of 1.8 sessions (SD = 1.6) in the first 3 months and 1.1 (SD = 1.2) in the following 3 months. Patients in the DIALOG+ arm had better SQOL at 3, 6 and 12 months (p = 0.035, 0.058 and 0.014, respectively; Cohen's d = 0.29-0.34). They also had significantly fewer unmet needs at 3 and 6 months, fewer general psychopathological symptoms at all time points and better objective social outcomes at 12 months, with no significant differences in other outcomes. Overall care costs were lower in the intervention group. <b><i>Conclusion:</i></b> Despite variable implementation, DIALOG+ is a beneficial intervention for community patients with psychosis. As a non-expensive and potentially cost-saving, generic intervention, DIALOG+ may be widely used and may improve the effectiveness of community treatment. Further trials should test DIALOG+ in different patient groups and contexts.
DOI: 10.6084/m9.figshare.7707605.v3
title: Global High-Resolution Soil-Water Balance

description: The Global High-Resolution Soil-Water Balance dataset provides hydrological raster data describing actual evapotranspiration and soil water deficit with resolution of 30 arc seconds.
DOI: 10.15482/usda.adc/1518751
title: Halyomorpha halys Official Gene Set v1.2

description: This dataset presents the Halyomorpha halys Official Gene Set (OGS) v1.2. OGSv1.2 is an update of Halyomorpha halys OGSv1.1 (https://doi.org/10.15482/USDA.ADC/1504240) to the coordinates of genome assembly GCA_000696795.3 (https://www.ncbi.nlm.nih.gov/assembly/GCA_000696795.3) using https://github.com/NAL-i5K/coordinates_conversion/. The original OGSv1.0 is an integration of automatic gene predictions from NCBI's eukaryotic annotation pipeline, NCBI Halyomorpha halys Annotation Release 100 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Halyomorpha_halys/100/; ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/696/795/GCF_000696795.1_H...), with manual annotations by the research community (performed via the Apollo manual curation software, http://genomearchitect.org/). Manual annotations performed by the community were downloaded from Apollo, QC'd, and merged with NCBI Halyomorpha halys Annotation Release 100 using the GFF3toolkit software (https://github.com/NAL-i5K/GFF3toolkit/releases/tag/v1.4.4). The resulting merged dataset was formatted for ingest into the i5k Workspace and GenBank databases, resulting in Halyomorpha halys Official Gene Set (OGS) v1.0. Halyomorpha Official Gene Set halhal_OGSv1.1 is a minor update of halhal_OGSv1.0: Alias attributes were added to all manually annotated cathepsin models; six models from contaminated scaffolds were removed; and notes were added to 3 models located on possibly contaminated scaffolds.
DOI: 10.25446/oxford.28330022.v1
title: Digitised comparative word list of Malay, Nias, Toba-Batak, and Enggano in Modigliani’s “L’isola Delle Donne” from 1894

description: Digitised comparative word list in Modigliani's "L'isola delle donne" from 1894. The word list captures Nias, Batak-Toba, Enggano, and Malay forms (with Italian reference). The Enggano forms are included in the EnoLEX database.<i>For more detailed info, see the </i><i>README</i><i> page on </i><i>GitHub</i><i>, and for future updates, check the </i><i>Releases</i><i> page also on the </i><i>source GitHub repository</i><i>.</i>
DOI: 10.6084/m9.figshare.21775100.v1
title: ISGC run3 - metadata

description: Metadata for 3522 animals used in ISGC's run3 for variant detection. Data was retrieved from NCBI and manually curated.
DOI: 10.6084/m9.figshare.23597097.v1
title: Dataset file for peerviewing paper titled ' Highly Heterogeneous Carbon Dioxide and Methane Emissions from a Shallow Urban Lake '

description: Descripted in this dataset are the measurements of 30 sampling points from Lake Xuanwu. The measurements include the DO, pH, water temperature, DIC, DOC, pCO2, pCH4 on each sampling point.
DOI: 10.6084/m9.figshare.25534552.v1
title: Figure Data

description: Includes the data necessary to reproduce the figures in "Controlling Chaos Using Edge Computing Hardware" by Kent et al. 2024. The data for each figure is separated into individual Excel files with labeled columns. The python code labeled "figures.py" in the "Code" folder can be run to reproduce the figures. See the README file in the "Python and FPGA code" folder for more details.
DOI: 10.15131/shef.data.25206482.v2
title: Data set for: Analysis, classification and identification of gastropod locomotive mucus by Fourier transform infrared spectroscopy

description: Data used to characterise gastropod locomotive mucus. FTIR is used to analyse and identify gastropod locomotive mucus, as well as a tool to classify gastropods based on spectral features. Also, our study collected data providing information related to the relative proportion of protein secondary structures at different temperatures of 12 gastropod species (including terrestrial slugs and snails, and freshwater snails).
DOI: 10.17632/489cwhsdsr
title: ANTIBIOTIC-RESISTANT BACTERIA IN DRINKING WATER 

description: Data from molecular analyses of antibiotic resistant bacteria isolated from drinking water samples in three rural populations of the city of Cartagena-Colombia are shown. Images of groundwater wells and water transport and storage mechanisms used by the inhabitants of the populations under study are also shown.
DOI: 10.25452/figshare.plus.28386041.v1
title: MILUV: A Multi-UAV Indoor Localization dataset with UWB and Vision

description: This dataset comprises 217 minutes of flight time over 36 experiments using three quadcopters, collecting ultra-wideband (UWB) ranging data such as the raw timestamps and channel-impulse response data, vision data from a stereo camera and a bottom-facing monocular camera, inertial measurement unit data, height measurements from a laser rangefinder, magnetometer data, and ground-truth poses from a motion-capture system. The UWB data is collected from up to 12 transceivers affixed to mobile robots and static tripods in both line-of-sight and non-line-of-sight conditions. The UAVs flew at a maximum speed of 4.418 m/s in an obstacle-free indoor environment with visual fiducial markers as features.
DOI: 10.6084/m9.figshare.19372466.v1
title: Trophoblast_Subset.Robj

description: The trophoblast subset (Figures 2-6) from Marsh et al., 2022. This is a R object containing all cells, clustering, and metadata for the trophoblast subset of the integrated dataset. This contains trophoblast isolated from human second trimester villous and smooth chorion samples. More detail can be found in the manuscript.
DOI: 10.6084/m9.figshare.6159266.v5
title: Expression patterns of HvUBC (AK252586.1)

description: Time course of HvUBC (AK252586.1) mRNA levels in barley epidermal peels challenged with host (Bgh) and nonhost (Bgt) powdery mildew pathogens. Profile plots show quantile-normalized signal intensity values (log2transformed) from the Agilent 44k oligonucleotide array. Mean of 3 biological replicates are shown.
DOI: 10.17632/7ny8bnz73y
title: SPT6 Regulates H3K14Ac Deposition in Mouse Embryonic Stem Cells

description: WB of Figures 1A, 4A, 4B, 4C, S2B, S2C, S4B, S4E, S4F, S6E.
DOI: 10.6084/m9.figshare.1340477.v1
title: wound healing DATS

description: Quantitative of wound healing experiments
DOI: 10.6084/m9.figshare.18866282.v1
title: Havasu Temporal Symmetry model encounter history file

description: Encounter history file for humpback chub in Havasu Creek, for use in a Temporal Symmetry Model for recruitment of non-translocated fish.
DOI: 10.6084/m9.figshare.22332574.v1
title: PDAC

description: <strong>Single-cell data for deconvolution (PDAC)</strong>
DOI: 10.6084/m9.figshare.26932960.v2
title: Bacterial production rates in the East China Sea and Yellow Sea

description: This provides a dataset for surface and vertical distributions of bacterial production in the East China Sea and Yellow Sea during the spring of 2021.
DOI: 10.6084/m9.figshare.28607183.v1
title: PSINet data

description: Water potential data of Mediterranean forest scpecies
DOI: 10.6084/m9.figshare.29146283.v4
title: NULL

description: NULL
DOI: 10.17632/c76tp5ptrz
title: Mobile banking apps – Dataset from Ho Chi Minh City, Vietnam

description: The survey was carried out in the city. Ho Chi Minh City in May-June 2021.
DOI: 10.6084/m9.figshare.20745622.v1
title: Supplementary Material for: Comparative Metastatic Rates in GEP Class 1A versus 1B Posterior Uveal Melanoma. Results Contrary to Expectations.

description: Purpose: The purpose of this study was to determine whether the metastatic rates in patients with gene expression profile (GEP) class 1A versus 1B posterior uveal malignant melanoma supported or contradicted predictions of very low metastatic rate in GEP 1A cases and moderate rate in GEP 1B cases. Patients/Methods: 164 patients with a cytopathologically-confirmed primary posterior uveal malignant melanoma classified by GEP testing as class 1 (100 GEP 1A, 64 GEP 1B) were evaluated. Kaplan-Meier rates of metastasis were computed and plotted for the GEP class 1 subgroups. Median follow-up of patients who were still alive without metastasis on the date of data analysis was 100.5 months for the GEP 1A patients and 97.2 months for the GEP 1B patients. Results: The actuarial 5-year rate of uveal melanoma metastasis was 10.8% (std. error = 3.2%) in the GEP 1A patients versus 0% in the GEP 1B patients, and the actuarial 10-year rate of metastasis was 12.2% (std. error = 3.5%) in the GEP 1A patients versus 2.1% (std. error 2.1%) in the GEP 1B patients. Conclusion: The results of this retrospective single-center study cast doubt on the validity of the prognostic stratification of GEP class 1 posterior uveal malignant melanomas into very low risk (GEP 1A) versus intermediate risk (GEP 1B) of metastasis subgroups provided by the commercially available GEP test.
DOI: 10.6084/m9.figshare.28877714.v3
title: Exploring geo-tagging behaviour in social media data through structural topic modelling and geographically weighted regression

description: In this study, Tweets were used as inputs for structural topic modelling (STM) to detect what topics were expressed by social media users. The STM identified 20 topics ranging from daily life to professional services. The results revealed how topic words were associated with geo-information versus non-geo-information in their posts. Additionally, geographically weighted regression (GWR) was used to investigate how geo-topics were spatially associated with land-use types, the results identified the specific areas where the geo-topics were positively correlated with different land-use categories.To avoid privacy concerns and to follow the terms of Twitter/X API, the raw individual Tweets are not published. The API terms here (https://developer.x.com/en/more/developer-terms/agreement-and-policy).
DOI: 10.6084/m9.figshare.6152309.v1
title: RESTAURANT RESERVATION MANAGEMENT CONSIDERING TABLE COMBINATION

description: ABSTRACT This paper presents a case study of table reservation practice for restaurant business within Walt Disney World. A unique feature here is to consider table combination to capture revenue potentials from different party sizes and at different time periods. For example, a party of large size can be served by combining two or more small tables. A mixed integer programming (MIP) model is developed to make the reservation recommendation. We propose a rolling horizon reservation policy such that the value of a particular table is periodically evaluated and updated. This is a typical revenue management method in the airlines and other industries, the essence of which is to compare the future expected revenue with a currently offered price. Using historical data, numerical test shows a significant revenue improvement potential from our proposed model.
DOI: 10.17632/8pbbjf274w
title: Gastrointestinal Bleeding WCE images Dataset

description: The dataset contains the wireless capsule endoscopy (WCE) images of gastrointestinal (G) bleeding from Pakistan. All images were obtained with the help of Turkey Hospital Muzaffargarh (THM), Muzaffargarh, Pakistan, from January 2022 to May 2022. The dataset contains a total of 226 GI images, including 113 images of GI bleeding or lesions and 113 WCE images of normal patients.
DOI: 10.17632/c53w836bbk
title: Data for: Local time variation of water ice clouds on Mars as observed by THEMIS

description: This file contains retrievals of column-integrated dust and water ice aerosol optical depth on Mars using infrared images from the THEMIS instrument on-board the Mars Odyssey spacecraft.
DOI: 10.17632/rxb7j5n5yy
title: The DEPOSIT computer code: Calculations of electron-loss cross-sections for complex ions colliding with neutral atoms

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract A description of the DEPOSIT computer code is presented. The code is intended to calculate total and m -fold electron-loss cross-sections ( m is the number of ionized electrons) and the energy T ( b ) deposited to the projectile (positive or negative ion) during a collision with a neutral atom at low and intermediate collision energies as a function of the impact parameter b . The deposited energy is calculated as a 3D integral over the projectile coordinate space in the classical energy-depo... Title of program: DEPOSIT Catalogue Id: AENP_v1_0 Nature of problem For a given impact parameter b to calculate the deposited energy T(b) as a 3D integral over a coordinate space, and ionization probabilities P m (b). For a given energy to calculate the total and m-fold electron-loss cross sections using T(b) values. Versions of this program held in the CPC repository in Mendeley Data AENP_v1_0; DEPOSIT; 10.1016/j.cpc.2012.09.028 AENP_v2_0; DEPOSIT 2014; 10.1016/j.cpc.2014.06.012
DOI: 10.6084/m9.figshare.13624565.v1
title: Estimates of Tasmanian devil density

description: Estimates of Tasmanian devil density used in the joint-likelihood models from Cunningham et al (2020) Ecology Letters. Density estimates were calculated using spatially explicit capture-recapture (see paper for details). Spatial coordinates have been removed to ensure that trapping sites of this endangered species are not tampered with.