cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24796659
title: Macrophage ablation via PLX3397 treatment did not affect peripheral immune cells in the spleen (Experiment 2) (Manuscript: Fig. S4-3)

description: Mice received either control chow or PLX3397-formulated chow for seven days to facilitate macrophage depletion. Following initiation of cisplatin administration, mice received daily PLX3397 treatment via oral gavage, which continued until euthanasia, ensuring sustained macrophage ablation (Experiment 2). Spleens harvested after endpoint auditory test were disrupted to obtain single cell suspension. Red blood cell (RBC) lysis was performed. Spleen single cell suspensions were pre-treated with anti-mouse CD16/CD32 antibody to block Fc receptors followed by surface staining with antibodies. Cells were then washed and incubated in Fixable Viability dye eFluor™450. Cell surface markers were used to identify specific populations of immune cells, including macrophages (CD11b+, CD11b+ CX3CR1<sup>GFP</sup>+, and CD11b+ CX3CR1<sup>GFP</sup>-), neutrophils (CD11b+ F4/80- Ly6G+), NK cells (CD3e- NK1.1+), T cells (CD11b- CD3e+), and B cells (CD11b- CD19+). The data suggest that macrophage ablation via PLX3397 treatment does not affect peripheral immune cells in the spleen (Experiment 2).
DOI: 10.6084/m9.figshare.24796659.v1
title: Macrophage ablation via PLX3397 treatment did not affect peripheral immune cells in the spleen (Experiment 2) (Manuscript: Fig. S4-3)

description: Mice received either control chow or PLX3397-formulated chow for seven days to facilitate macrophage depletion. Following initiation of cisplatin administration, mice received daily PLX3397 treatment via oral gavage, which continued until euthanasia, ensuring sustained macrophage ablation (Experiment 2). Spleens harvested after endpoint auditory test were disrupted to obtain single cell suspension. Red blood cell (RBC) lysis was performed. Spleen single cell suspensions were pre-treated with anti-mouse CD16/CD32 antibody to block Fc receptors followed by surface staining with antibodies. Cells were then washed and incubated in Fixable Viability dye eFluor™450. Cell surface markers were used to identify specific populations of immune cells, including macrophages (CD11b+, CD11b+ CX3CR1<sup>GFP</sup>+, and CD11b+ CX3CR1<sup>GFP</sup>-), neutrophils (CD11b+ F4/80- Ly6G+), NK cells (CD3e- NK1.1+), T cells (CD11b- CD3e+), and B cells (CD11b- CD19+). The data suggest that macrophage ablation via PLX3397 treatment does not affect peripheral immune cells in the spleen (Experiment 2).
DOI: 10.5281/zenodo.10699561
title: Coffee Flowering
DOI: 10.5281/zenodo.10699562
title: Coffee Flowering
DOI: 10.34740/kaggle/dsv/7689334
title: Layline Shareholder activism dataset
DOI: 10.6084/m9.figshare.25282783
title: Additional file 1 of Multi-omics reveal mechanisms of high enteral starch diet mediated colonic dysbiosis via microbiome-host interactions in young ruminant

description: Additional file 1: Table S1. Ingredient and chemical composition of the basal diet. Table S2. The specific primers for the qPCR of β-Actin and tested mRNAs. Table S3. Effects of different hindgut enteral starch diets on the rumen fermentation parameters in growing goats. Table S4. The origin of metabolites. Figure S1. The flow chart of the present study. Figure S2. Fecal evaluation system for dairy goats. Figure S3. The dry matter intake (DMI) and content of luminal nutrients (n = 20 for DMI, and n = 8 for luminal content of nutrients). Figure S4. The gene expression of colonic bile acids receptors (n = 6). Figure S5. Spearman correlation among the host phenotypes, nutrients, microbes, and microbial functions.
DOI: 10.6084/m9.figshare.25282783.v1
title: Additional file 1 of Multi-omics reveal mechanisms of high enteral starch diet mediated colonic dysbiosis via microbiome-host interactions in young ruminant

description: Additional file 1: Table S1. Ingredient and chemical composition of the basal diet. Table S2. The specific primers for the qPCR of β-Actin and tested mRNAs. Table S3. Effects of different hindgut enteral starch diets on the rumen fermentation parameters in growing goats. Table S4. The origin of metabolites. Figure S1. The flow chart of the present study. Figure S2. Fecal evaluation system for dairy goats. Figure S3. The dry matter intake (DMI) and content of luminal nutrients (n = 20 for DMI, and n = 8 for luminal content of nutrients). Figure S4. The gene expression of colonic bile acids receptors (n = 6). Figure S5. Spearman correlation among the host phenotypes, nutrients, microbes, and microbial functions.
DOI: 10.6084/m9.figshare.25282829
title: Additional file 1 of Identifying causal associations between women’s reproductive traits and risk of schizophrenia: a multivariate validated two-sample Mendelian randomization analysis

description: Additional file 1: Supplementary materials associated with this article can be found online at Table S1-S11.
DOI: 10.6084/m9.figshare.25282829.v1
title: Additional file 1 of Identifying causal associations between women’s reproductive traits and risk of schizophrenia: a multivariate validated two-sample Mendelian randomization analysis

description: Additional file 1: Supplementary materials associated with this article can be found online at Table S1-S11.
DOI: 10.6084/m9.figshare.25282993.v1
title: Supplementary Material for: Oncogenic MTOR signaling axis compensates BTK inhibition in a Chronic Lymphocytic Leukemia patient with Richter Transformation: A Case Report and Review of the Literature

description: Introduction: Targeting the B cell receptor (BCR) pathway via ibrutinib, a specific inhibitor of Bruton’s tyrosine kinase, has shown marked clinical efficacy in treatment of patients with chronic lymphocytic leukemia (CLL), thus becoming a preferred first line option independent of risk factors. However, acquired resistance to ibrutinib poses a major clinical problem and requires the development of novel treatment combinations to increase efficacy and counteract resistance development and clinical relapse rates.
Case Presentation: In this study, we performed exome and transcriptome analyses of an ibrutinib resistant CLL patient in order to investigate genes and expression patterns associated with ibrutinib resistance. Here we provide evidence that ibrutinib resistance can be attributed to aberrant mammalian target of rapamycin (MTOR) signaling. 
Conclusion: Thus, our study proposes that combined use of MTOR inhibitors with ibrutinib could be a possible option to overcome therapy resistance in ibrutinib treated patients.
DOI: 10.17909/tw7g-y088
title: Data from paper "A Strongly Lensed Dusty Starburst of an Intrinsic Disk Morphology at Photometric Redshift of 7.7"
DOI: 10.57967/hf/1809
title: sinhala_synthetic_ocr-large
DOI: 10.6084/m9.figshare.25272451.v1
title: RetroWISE-data.zip

description: Data used for RetroWISE
DOI: 10.1594/pangaea.841241
title: Cibicides kullenbergi B/Ca measurements in sub-Antarctic sediment core MD07-3076Q (last 68 ka)
DOI: 10.1594/pangaea.837065
title: Stable oxygen and carbon isotope data of Globigerina bulloides and Neogloboquadrina pachyderma s. from sediment core MD07-3076Q for the last 67 ka
DOI: 10.1594/pangaea.837067
title: Planktonic foraminifer assemblage changes in the sub-Antarctic Atlantic over the last 68 ka of sediment core MD07-3076Q
DOI: 10.1594/pangaea.856698
title: High resolution δ¹⁸O and Mg/Ca measurements on the benthic foraminifera Uvigerina bifurcata from marine sediment core JR244-GC528
DOI: 10.1594/pangaea.848719
title: LOVECLIM model data of deep sub-Antarctic Atlantic carbonate ion changes during MIS 3
DOI: 10.1594/pangaea.848720
title: LOVECLIM model data time series during MIS3
DOI: 10.1594/pangaea.845075
title: Changes in bottom water oxygenation in the sub-Antarctic Atlantic during the last 68 kyrs, sediment core MD07-3076Q
DOI: 10.1594/pangaea.845076
title: Opal in sediment core MD07-3076Q during the last 68 kyrs

description: This dataset includes sub-millennially resolved biogenic silica (opal) measurements in the central sub-Antarctic Atlantic determined via Fourier Transform Infrared Spectroscopy (FTIRS). 230Th-normalized fluxes have been determined for key intervals, i.e. the deglaciation and Antarctic warming event (AIM) 1. Sedimentary opal content and opal fluxes are consistent, which indicates that opal percentages faithfully mirror preserved opal fluxes in MD07-3076Q sediments.
DOI: 10.1594/pangaea.845077
title: Redox-sensitive element accumulation in authigenic coatings of G. bulloides and Uvigerina spp. during the last 68 kyrs in sediment core MD07-3076Q

description: This dataset includes measurements of redox-sensitive elements in the authigenic coatings (c) attached to the calcium carbonate shell (cc) of planktonic (G. bulloides) and benthic (Uvigerina spp.) foraminifera.
DOI: 10.1594/pangaea.849505
title: Stable carbon isotopes of Planulina wuellerstorfi of sediment core MD01-2444

description: The observation that Greenland and Antarctic temperatures have followed a specific 'asymmetrical' pattern on millennial time-scales sets rigid constraints on any viable theory of abrupt climate change. The further observation that the very same asymmetry is also reflected in planktonic and benthic d18O measurements from the Northeast Atlantic has extended this constraint to include a specific response in the ocean. Here we present records of deep-water temperature, d18O and d13C variability from the Northeast Atlantic that help to shed light on the links between overturning circulation perturbations, sea-level variability and inter-hemispheric climate change on millennial time-scales. Results indicate that while deep-water temperatures in the Northeast Atlantic have tracked Greenland climate, the d18O signature of local deepwater (d18Odw) has varied in a manner more reminiscent of Antarctic temperature variability. The previously identified correspondence of Antarctic warm events with benthic d18O minima in the Northeast Atlantic is thus found to apply specifically to d18Odw minima, and to extend beyond Marine Isotope Stage 3 to the entirety of the last 50 ka. It is impossible to reconcile completely the Iberian Margin d18Odw record with existing reconstructions of millennial sea-level variability, leading to the conclusion that a significant portion of the d18Odw record must represent local hydrographic change. This is supported by benthic d13C measurements, which suggest the incursion during Greenland stadials of a colder, low-d18O and low-d13C water-mass, of presumed Antarctic origin. These observations confirm a one-to-one coupling of inter-hemispheric climate events with changes in the Atlantic overturning circulation, but fail to rule in or out a unique mechanism by which they were triggered.
description: Supplement to: Skinner, Luke C; Elderfield, Henry; Hall, Michael A (2007): Phasing of Millennial Climate Events and Northeast Atlantic Deep-Water Temperature Change Since 50 Ka Bp. In: Schmittner, A; Chiang, JCH; Hemming, SR (eds.), Ocean Circulation: Mechanisms and Impacts-Past and Future Changes of Meridional Overturning, Geophysical Monograph Series, 173, 197-208
DOI: 10.1594/pangaea.856699
title: High resolution δ¹⁸O and Mg/Ca measurements on the benthic foraminifera Uvigerina spp. from marine sediment core MD07-3076
DOI: 10.1594/pangaea.856700
title: High resolution δ¹⁸O measurements on the benthic foraminifera Uvigerina bifurcata from marine sediment core JR244-GC528
DOI: 10.1594/pangaea.856701
title: (Table S1) Age control points of marine sediment core JR244-GC528
DOI: 10.1594/pangaea.858257
title: Stable oxygen and carbon isotopes of C. wuellerstorfi, C. kullenbergi and Uvigerina spp. from MD07-3076Q (sub-Antarctic Atlantic) over the last 22 kyrs

description: Stable isotope ratios of C. wuellerstorfi, C. cf. wuellerstorfi and Uvigerina spp. are published through this dataset. C. kullenbergi d18O and d13C were previously published in Vázquez Riveiros et al., (2010) and Waelbroeck et al. (2011).
DOI: 10.1594/pangaea.858326
title: Stable oxygen and carbon isotopes of C. wuellerstorfi, C. kullenbergi and Uvigerina spp. from MD07-3077 in the sub-Antarctic Atlantic (147-108 kyrs BP)
DOI: 10.1594/pangaea.858327
title: Stable oxygen and carbon isotopes of C. wuellerstorfi, C. kullenbergi and Uvigerina spp. from MD07-3077 in the sub-Antarctic Atlantic (441-371 kyrs BP)

description: Stable isotopes data, in particular C. kullenbergi data from MIS 12 and C. wuellerstorfi data from MIS 11 were in part previously published in Vázquez-Riveiros et al., (2010) and Vázquez-Riveiros et al., (2013).
DOI: 10.1594/pangaea.897587
title: Fluxes of Thorium 232, excess Barium and Iron from ODP Site 202-1240

description: ²³⁰Th-normalized fluxes of ²³²Th, Baₓₛ and Fe from ODP 1240 (0.02°N, 86.46°W; 2.9 km) in the eastern equatorial Pacific Ocean.
description: Supplement to: Jacobel, Allison W; Anderson, Robert F; Winckler, Gisela; Costa, K M; Gottschalk, Julia; Middleton, Jennifer L; Pavia, Frank J; Shoenfelt, Elizabeth M; Zhou, Y (2019): No evidence for equatorial Pacific dust fertilization. Nature Geoscience, 12(3), 154-155
DOI: 10.1594/pangaea.898189
title: Planktonic foraminifera counts and SST reconstruction from sediment core MD07-3077
DOI: 10.1594/pangaea.898190
title: Foraminiferal geochemistry of sediment core MD07-3077
DOI: 10.1594/pangaea.898191
title: Benthic foraminifera stable isotope ratios and bottom water oxygen reconstructions from sediment core MD07-3077
DOI: 10.1594/pangaea.898192
title: Opal content of sediment core MD07-3077
DOI: 10.1594/pangaea.900491
title: Carbon isotope ratios and F2/F1 size ratios of crenarchaeol (cren) for site ODP174AX Ancora
DOI: 10.1594/pangaea.900495
title: Carbon isotope ratios and F2/F1 size ratios of crenarchaeol (cren) for site ODP1172D (Tasman Sea)

description: CSF = core depth below seafloor.
DOI: 10.1594/pangaea.900497
title: Peak areas of isoprenoid and branched GDGTs as well as GDGT index and calculated sea surface temperature (SST) values for site ODP174AX Ancora

description: GDGT-1a, GDGT-2a, and GDGT-3a are minor isomers eluting before the main peaks. Raw TEX86 values were corrected as described in the main text.
DOI: 10.1594/pangaea.900508
title: Content and carbon isotope ratios of total organic carbon (TOC) as well as carbonate content calculated from weight loss following sample acidification for site ODP 174AX (Ancora)
DOI: 10.1594/pangaea.918536
title: Grain size of core Konar Sandal peat bog, SE Iran
DOI: 10.1594/pangaea.918537
title: Total organic carbon of core Konar Sandal peat bog, SE Iran
DOI: 10.1594/pangaea.918539
title: X-ray fluorescence (XRF) measurements of core Konar Sandal peat bog, SE Iran
DOI: 10.1594/pangaea.918544
title: XRD analyses of core Konar Sandal peat bog, SE Iran
DOI: 10.1594/pangaea.926787
title: Age versus component declination and inclination of natural remanent magnetization (NRM) of discrete samples recording the Iceland Basin excursion in Core MD07-3077 recovered during Marion Dufresne cruise VT90/SOUC

description: Component declination and inclination, determined from stepwise alternating field demagnetization data recording the Iceland Basin excursion from discrete (2x2 cm²) samples from Core MD07-3077 (see Channell et al., 2017). Age models for records of the Laschamp and Iceland Basin excursions were derived from radiocarbon dates, and from matching sea-surface temperature records to Antarctic (EPICA) air-temperature records from ice cores. The onset of the Laschamp excursion occurred during Antarctic Isotopic Maximum (AIM) 10, consistent with its occurrence during Greenland Interstadial 10. The end of the Laschamp excursion occurred prior to AIM 9 in Greenland Stadial 10. The age model is supported by synchroneity of directional and relative paleointensity manifestations of the Laschamp excursion in the marine core with peaks in EPICA10Be and nitrate flux. The Iceland Basin excursion is synchronous with the final phase of the transition from marine isotope stage (MIS) 7a to MIS 6e as recorded in the EPICA δD record. The onset of the Laschamp and Iceland Basin excursions, defined here by component inclinations &gt;-40°, occurred at 41.4 ka and 190.0 ka, and durations are ~1 kyr and ~ 3.5 kyr, respectively, although these estimates depend on the criteria used to define the directional excursions. By comparison with Laschamp and Iceland Basin excursion records from the North Atlantic Ocean, the two excursions are synchronous at centennial timescales between the two hemispheres, based on synchronization of the GICC05 and AICC2012 age models for Greenland and Antarctic ice cores.
DOI: 10.1594/pangaea.926795
title: Age versus component declination and inclination of natural remanent magnetization (NRM) of u-channel samples recording the Iceland Basin excursion in Core MD07-3077 recovered during Marion Dufresne cruise VT90/SOUC

description: Component declination and inclination, determined from stepwise alternating field demagnetization data recording the Iceland Basin excursion from u-channel samples from Core MD07-3077 (see Channell et al., 2017). Age models for records of the Laschamp and Iceland Basin excursions were derived from radiocarbon dates, and from matching sea-surface temperature records to Antarctic (EPICA) air-temperature records from ice cores. The onset of the Laschamp excursion occurred during Antarctic Isotopic Maximum (AIM) 10, consistent with its occurrence during Greenland Interstadial 10. The end of the Laschamp excursion occurred prior to AIM 9 in Greenland Stadial 10. The age model is supported by synchroneity of directional and relative paleointensity manifestations of the Laschamp excursion in the marine core with peaks in EPICA10Be and nitrate flux. The Iceland Basin excursion is synchronous with the final phase of the transition from marine isotope stage (MIS) 7a to MIS 6e as recorded in the EPICA δD record. The onset of the Laschamp and Iceland Basin excursions, defined here by component inclinations &gt;-40°, occurred at 41.4 ka and 190.0 ka, and durations are ~1 kyr and ~ 3.5 kyr, respectively, although these estimates depend on the criteria used to define the directional excursions. By comparison with Laschamp and Iceland Basin excursion records from the North Atlantic Ocean, the two excursions are synchronous at centennial timescales between the two hemispheres, based on synchronization of the GICC05 and AICC2012 age models for Greenland and Antarctic ice cores.
DOI: 10.1594/pangaea.926796
title: Age versus component declination and inclination of natural remanent magnetization (NRM) of u-channel samples recording the Laschamp excursion in Core MD07-3076 recovered during Marion Dufresne cruise VT90/SOUC

description: Component declination and inclination, determined from stepwise alternating field demagnetization data recording the Laschamp excursion from u-channel samples from Core MD07-3076 (see Channell et al., 2017). Age models for records of the Laschamp and Iceland Basin excursions were derived from radiocarbon dates, and from matching sea-surface temperature records to Antarctic (EPICA) air-temperature records from ice cores. The onset of the Laschamp excursion occurred during Antarctic Isotopic Maximum (AIM) 10, consistent with its occurrence during Greenland Interstadial 10. The end of the Laschamp excursion occurred prior to AIM 9 in Greenland Stadial 10. The age model is supported by synchroneity of directional and relative paleointensity manifestations of the Laschamp excursion in the marine core with peaks in EPICA10Be and nitrate flux. The Iceland Basin excursion is synchronous with the final phase of the transition from marine isotope stage (MIS) 7a to MIS 6e as recorded in the EPICA δD record. The onset of the Laschamp and Iceland Basin excursions, defined here by component inclinations &gt;-40°, occurred at 41.4 ka and 190.0 ka, and durations are ~1 kyr and ~ 3.5 kyr, respectively, although these estimates depend on the criteria used to define the directional excursions. By comparison with Laschamp and Iceland Basin excursion records from the North Atlantic Ocean, the two excursions are synchronous at centennial timescales between the two hemispheres, based on synchronization of the GICC05 and AICC2012 age models for Greenland and Antarctic ice cores.
DOI: 10.1594/pangaea.926797
title: Age versus component declination and inclination of natural remanent magnetization (NRM) of discrete samples recording the Laschamp excursion in Core MD07-3076 recovered during Marion Dufresne cruise VT90/SOUC

description: Component declination and inclination, determined from stepwise alternating field demagnetization data recording the Laschamp excursion from discrete (2x2 cm²) samples from Core MD07-3076 (see Channell et al., 2017). Age models for records of the Laschamp and Iceland Basin excursions were derived from radiocarbon dates, and from matching sea-surface temperature records to Antarctic (EPICA) air-temperature records from ice cores. The onset of the Laschamp excursion occurred during Antarctic Isotopic Maximum (AIM) 10, consistent with its occurrence during Greenland Interstadial 10. The end of the Laschamp excursion occurred prior to AIM 9 in Greenland Stadial 10. The age model is supported by synchroneity of directional and relative paleointensity manifestations of the Laschamp excursion in the marine core with peaks in EPICA10Be and nitrate flux. The Iceland Basin excursion is synchronous with the final phase of the transition from marine isotope stage (MIS) 7a to MIS 6e as recorded in the EPICA δD record. The onset of the Laschamp and Iceland Basin excursions, defined here by component inclinations &gt;-40°, occurred at 41.4 ka and 190.0 ka, and durations are ~1 kyr and ~ 3.5 kyr, respectively, although these estimates depend on the criteria used to define the directional excursions. By comparison with Laschamp and Iceland Basin excursion records from the North Atlantic Ocean, the two excursions are synchronous at centennial timescales between the two hemispheres, based on synchronization of the GICC05 and AICC2012 age models for Greenland and Antarctic ice cores.
DOI: 10.1594/pangaea.926798
title: Age versus two relative paleointensity proxies (slopes of NRM/ARM and NRM/IRM) for u-channel samples from Core MD07-3076 recovered during Marion Dufresne cruise VT90/SOUC

description: Two relative paleointensity (RPI) proxies (slopes of NRM/ARM and NRM/IRM) for u-channel samples from Core MD07-3076. The RPI proxies were determined from stepwise alternating field demagnetization applied to the natural remanent magnetization (NRM) and to the anhysteretic remanent magnetization (ARM) (see Channell et al., 2017). Age models for records of the Laschamp and Iceland Basin excursions were derived from radiocarbon dates, and from matching sea-surface temperature records to Antarctic (EPICA) air-temperature records from ice cores. The onset of the Laschamp excursion occurred during Antarctic Isotopic Maximum (AIM) 10, consistent with its occurrence during Greenland Interstadial 10. The end of the Laschamp excursion occurred prior to AIM 9 in Greenland Stadial 10. The age model is supported by synchroneity of directional and relative paleointensity manifestations of the Laschamp excursion in the marine core with peaks in EPICA10Be and nitrate flux. The Iceland Basin excursion is synchronous with the final phase of the transition from marine isotope stage (MIS) 7a to MIS 6e as recorded in the EPICA δD record. The onset of the Laschamp and Iceland Basin excursions, defined here by component inclinations &gt;-40°, occurred at 41.4 ka and 190.0 ka, and durations are ~1 kyr and ~ 3.5 kyr, respectively, although these estimates depend on the criteria used to define the directional excursions. By comparison with Laschamp and Iceland Basin excursion records from the North Atlantic Ocean, the two excursions are synchronous at centennial timescales between the two hemispheres, based on synchronization of the GICC05 and AICC2012 age models for Greenland and Antarctic ice cores.