cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh010919.07fu
title: SH010919.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh010920.07fu
title: SH010920.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh010921.07fu
title: SH010921.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh010922.07fu
title: SH010922.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh010923.07fu
title: SH010923.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.27rhqs
title: Occurrence Download

description: A dataset containing 29824 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Leptinotarsa decemlineata (Say, 1824)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29824 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083000-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsqp2y
title: Occurrence Download

description: A dataset containing 7059 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de Anélidos del Museo de Historia Natural Marina de Colombia - Makuriwa (Invemar)"
 ]
}

 The dataset includes 7059 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083001-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2e2pa
title: Occurrence Download

description: A dataset containing 473 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Dina lineata (O.F.Müller, 1773)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 473 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083003-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjsx5b
title: Occurrence Download

description: A dataset containing 27661 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Albizia julibrissin Durazz."
 ]
}

 The dataset includes 27661 records from 501 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083002-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bgy8t
title: Occurrence Download

description: A dataset containing 29824 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Leptinotarsa decemlineata (Say, 1824)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29824 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083004-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ees87b
title: Occurrence Download

description: A dataset containing 10670 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alnus cordata (Loisel.) Duby"
 ]
}

 The dataset includes 10670 records from 368 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083006-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.3564309
title: Simulation data of European seabass and meagre growth in Greece (C12A) under climate change scenarios

description: The dataset contains excel files with the biological predictions for European seabass and meagre generated within ClimeFish C12A. Simulations are done for climate scenarios RCP45 and RCP85 and at three time scales denoting short (2015-2025)-, mid (2025-2035)- and long (2045-2055)- term projections. The temperature data used for the simulations are also included as well as a file containing metadata.
DOI: 10.17632/36sxg77863.1
title: MCMC2 (version 1.1): A Monte Carlo code for multiply-charged clusters

description: Abstract This new version of the MCMC^2program for modeling the thermodynamic and structural properties of multiply-charged clusters by means of parallel classical Monte Carlo methods provides some enhancements and corrections to the earlier version [1]. In particular, histograms for negatively and positively charged particles are separated, parallel Monte Carlo simulations can be performed by attempting exchanges between all the replica pairs and not only one randomly chosen pair, a new random numb... Title of program: MCMC<sup>2</sup> Catalogue Id: AENZ_v1_1 Nature of problem We provide a general parallel code to investigate structural and thermodynamic properties of multiply charged clusters. Versions of this program held in the CPC repository in Mendeley Data AENZ_v1_0; MCMC<sup>2</sup>; 10.1016/j.cpc.2012.10.023 AENZ_v1_1; MCMC<sup>2</sup>; 10.1016/j.cpc.2013.09.026 AENZ_v1_2; MCMC<sup>2</sup>; 10.1016/j.cpc.2015.06.017 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/5dys6gx5f5.1
title: clumpy: A code for γ-ray signals from dark matter structures

description: Abstract We present the first public code for semi-analytical calculation of the γ-ray flux astrophysical J-factor from dark matter annihilation/decay in the Galaxy, including dark matter substructures. The core of the code is the calculation of the line of sight integral of the dark matter density squared (for annihilations) or density (for decaying dark matter). The code can be used in three modes: i) to draw skymaps from the Galactic smooth component and/or the substructure contributions, ii) to ca... Title of program: CLUMPY Catalogue Id: AEKS_v1_0 Nature of problem Calculation of γ-ray signal from dark matter annihilation (resp. decay). This involves a particle physics term and an astrophysical one. The focus here is on the latter. Versions of this program held in the CPC repository in Mendeley Data AEKS_v1_0; CLUMPY; 10.1016/j.cpc.2011.10.017 AEKS_v2_0; CLUMPY; 10.1016/j.cpc.2015.11.012 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/5rcxbpyphz.1
title: FAPT: A Mathematica package for calculations in QCD Fractional Analytic Perturbation Theory

description: Abstract We provide here all the procedures in Mathematica which are needed for the computation of the analytic images of the strong coupling constant powers in Minkowski (A _ν (s; ^(nf)) and Aνglob(s)) and Euclidean (A _ν ( ^(Q2); ^(nf)) and Aνglob( ^(Q2))) domains at arbitrary energy scales (s and ^(Q2), correspondingly) for both schemes - with fixed number of active flavours ^(nf)=3,4,5,6 and the global one with taking into account all heavy-quark thresholds. These singularity-free coup... Title of program: FAPT Catalogue Id: AENJ_v1_0 Nature of problem The values of analytic images Abar ν (Q 2 ) and Abar ν (s) of the QCD running coupling powers α ν s (Q 2 ) in Euclidean and Minkowski regions, correspondingly, are determined through the spectral representation in the QCD Analytic Perturbation Theory (APT). In the program FAPT we collect all relevant formulas and various procedures which allow for a convenient evaluation of Abar ν (Q 2 ) and Abar ν (s) using numerical integrations of the relevant spectral densities. Versions of this program held in the CPC repository in Mendeley Data AENJ_v1_0; FAPT; 10.1016/j.cpc.2012.08.014 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/d2kd7j4xxj.1
title: Four-index integral transformation exploiting symmetry

description: Abstract We present a Fortran implementation of four-index integral transformation in the LCAO-MO (linear combination of atomic orbitals–molecular orbitals) framework that exploits symmetry. Electron correlation calculations, such as configuration interaction (CI) calculations, usually require electron repulsion integrals to be transformed to a molecular orbital basis from a basis using atomic orbitals. In large molecular systems it is vital to exploit the sparsity of integrals in making this transfor... Title of program: SYM4TR Catalogue Id: ADUW_v1_0 Nature of problem Molecular orbital calculations including electron correlation effects usually require electron repulsion integrals to be transformed from an atomic orbital (AO) basis to a molecular orbital (MO) basis. By exploiting the sparsity of molecular integrals, the computational cost and memory needed for the transformation are minimized. Versions of this program held in the CPC repository in Mendeley Data ADUW_v1_0; SYM4TR; 10.1016/j.cpc.2004.01.008 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/db4yfvygwc.1
title: CrasyDSE: A framework for solving Dyson–Schwinger equations

description: Abstract Dyson-Schwinger equations are important tools for non-perturbative analyses of quantum field theories. For example, they are very useful for investigations in quantum chromodynamics and related theories. However, sometimes progress is impeded by the complexity of the equations. Thus automating parts of the calculations will certainly be helpful in future investigations. In this article we present a framework for such an automation based on a C++ code that can deal with a large number of Green... Title of program: CrasyDSE Catalogue Id: AEMY_v1_0 Nature of problem Solve (large) systems of Dyson-Schwinger equations numerically. Versions of this program held in the CPC repository in Mendeley Data AEMY_v1_0; CrasyDSE; 10.1016/j.cpc.2012.05.019 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/g2yycwtc2j.1
title: HELAC-NLO

description: Abstract Based on the OPP technique and the HELAC framework, HELAC-1LOOP is a program that is capable of numerically evaluating QCD virtual corrections to scattering amplitudes. A detailed presentation of the algorithm is given, along with instructions to run the code and benchmark results. The program is part of the HELAC-NLO framework that allows for a complete evaluation of QCD NLO corrections. Title of program: HELAC-1LOOP Catalogue Id: AEOC_v1_0 Nature of problem The evaluation of virtual one-loop amplitudes for multi-particle scattering is a longstanding problem [1]. In the last years the OPP reduction technique [2] opened the road for a fully numerical approach based on the evaluation of the one-loop amplitude for well-defined values of the loop momentum. Versions of this program held in the CPC repository in Mendeley Data AEOC_v1_0; HELAC-1LOOP; 10.1016/j.cpc.2012.10.033 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/kj29pph32p.1
title: Full-potential, linearized augmented plane wave programs for crystalline systems

description: Abstract In solids, linearized augmented plane waves (LAPW's) have proven to be an effective basis for the solution of the Kohn-Sham equations, the main calculational task in the local spin density approximation (LSDA) to density functional theory. The WIEN package uses LAPW's to calculate the LSDA total energy, spin densities, Kohn-Sham eigenvalues, and the electric field gradients at nuclear sites for a broad variety of space groups. Options include retention or om... Title of program: WIEN Catalogue Id: ABRE_v1_0 Nature of problem Calculation of spin densities, total energy, Kohn-Sham energy bands, and electric field gradients at nuclear sites, for various local density approximations in a broad variety of crystalline space groups, with or without relativistic corrections, with the full potential or in the muffin-tin approximation. Versions of this program held in the CPC repository in Mendeley Data ABRE_v1_0; WIEN; 10.1016/0010-4655(90)90187-6 ABRE_v2_0; wien-speedup; 10.1016/S0010-4655(99)00495-6 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/p5drd94h2y.1
title: Solution of poisson's equation in cylindrical coordinates

description: Title of program: DELSQRZ Catalogue Id: ABUC_v1_0 Nature of problem The DELSQRZ package obtains a rapid solution of Poisson's equation in the (r,z) plane subject to the following boundary conditions: (1) the potentials on the axis and at some radius r=r0 are always given; (2) either (i) the potential is given on the z-boundaries, or (ii) periodic z-geometry. Versions of this program held in the CPC repository in Mendeley Data ABUC_v1_0; DELSQRZ; 10.1016/0010-4655(71)90047-6 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/vbd4k8p3hs.1
title: MSTor: A program for calculating partition functions, free energies, enthalpies, entropies, and heat capacities of complex molecules including torsional anharmonicity

description: Abstract We present a Fortran program package, MSTor, which calculates partition functions and thermodynamic functions of complex molecules involving multiple torsional motions by the recently proposed MS-T method. This method interpolates between the local harmonic approximation in the low-temperature limit, and the limit of free internal rotation of all torsions at high temperature. The program can also carry out calculations in the multiple-structure local harmonic approximation. The program packag... Title of program: MSTor Catalogue Id: AEMF_v1_0 Nature of problem Calculation of the partition functions and thermodynamic functions (standard-state energy, enthalpy, entropy, and free energy as functions of temperatures) of complex molecules involving multiple torsional motions. Versions of this program held in the CPC repository in Mendeley Data AEMF_v1_0; MSTor; 10.1016/j.cpc.2012.03.007 AEMF_v2_0; MSTor; 10.1016/j.cpc.2013.03.011 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/vr7mhffdb4.1
title: Vectorized program of order N for molecular dynamics simulation of condensed matter I. MDPYRV1: Vector pyramid, short-range interactions

description: Abstract A vectorized program of order N for molecular dynamics simulation of condensed matter systems is presented. The program handles short-range interactions and it enables one to simulate efficiently very large systems. This program consists of three — to a certain degree independent — versions which differ in their central memory requirements and their speed. The first version does not involve any neighbour lists, so it requires relatively small computer memory, but it is the slowest version. Th... Title of program: MDPYRV1 Catalogue Id: ABTP_v1_0 Nature of problem Study of the thermodynamic, structural and dynamic properties of liquids or solids. Versions of this program held in the CPC repository in Mendeley Data ABTP_v1_0; MDPYRV1; 10.1016/0010-4655(91)90126-6 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/y6sxhyksy9.1
title: NLLjet: a Monte Carlo code for e+e- QCD jets including next-to-leading order terms

description: Abstract NLLjet, a Monte Carlo generator for the parton shower in e^+ e^- -annihilation has been developed. It can be used to determine the QCD Λ-parameter from e^+ e^- -jet events since it includes the next-to-leading order contribution. Title of program: NLLjet Catalogue Id: ABZA_v1_0 Nature of problem For the study of jets in high energy reactions, a Monte-Carlo event generator of QCD is indispensable. In order to determine the QCD fundamental parameter, i.e., the strong coupling constant, the parton- shower method including next-to-leading order terms is required. Versions of this program held in the CPC repository in Mendeley Data ABZA_v1_0; NLLjet; 10.1016/0010-4655(91)90051-L This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/6bwm7vk8gn.1
title: A program package for the Dirichlet problem with axially symmetric boundary conditions

description: Title of program: DIRPAK Catalogue Id: ABSB_v1_0 Nature of problem In this communication, I describe accurate finite difference techniques for the solution of the Dirichlet problem in cylindrical coordinates with axially symmetric boundary conditions. The program package can be used for the calculation of the capacitance of ring capacitors. Versions of this program held in the CPC repository in Mendeley Data ABSB_v1_0; DIRPAK; 10.1016/0010-4655(75)90080-6 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/6wh7cyxycj.1
title: NLO EW and QCD proton–proton cross section calculations with mcsanc-v1.01

description: Abstract mcsanc is a Monte Carlo tool based on the SANC (Support for Analytic and Numeric Calculations for experiments at colliders) modules for higher order calculations in hadron collider physics. It allows to evaluate NLO QCD and EW cross sections for Drell–Yan processes (inclusive), associated Higgs and gauge boson production and single-top quark production in s - and t -channels. The paper contains theoretical description of the SANC approach, numerical validations and manual. Title of program: mcsanc-v1.01 Catalogue Id: AEPO_v1_0 Nature of problem Theoretical calculations at next-to-leading order in perturbation theory allow the computation of higher precision amplitudes for Standard Model processes and decays, provided proper treatments of UV divergences and IR singularities are performed. Versions of this program held in the CPC repository in Mendeley Data AEPO_v1_0; mcsanc-v1.01; 10.1016/j.cpc.2013.05.010 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)