cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14221055
title: Additional file 6 of SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription

description: Additional file 6: Table S3. HEK293 transcript groups. An excel spreadsheet describing the structure of all ChAdOx1 nCoV19 derived transcript groups identified and how many transcripts belong to each group. In addition, it also describes what features are present on each transcript group. This list is the combined data from all time points in 293 cells.
DOI: 10.6084/m9.figshare.14221046
title: Additional file 4 of SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription

description: Additional file 4: Table S1. MRC5 transcript groups. An excel spreadsheet describing the structure of all ChAdOx1 nCoV19 derived transcript groups identified and how many transcripts belong to each group. In addition, it also describes what features are present on each transcript group. This list is the combined data from all time points in MRC5 cells.
DOI: 10.6084/m9.figshare.14221046.v1
title: Additional file 4 of SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription

description: Additional file 4: Table S1. MRC5 transcript groups. An excel spreadsheet describing the structure of all ChAdOx1 nCoV19 derived transcript groups identified and how many transcripts belong to each group. In addition, it also describes what features are present on each transcript group. This list is the combined data from all time points in MRC5 cells.
DOI: 10.6084/m9.figshare.14221058
title: Additional file 7 of SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription

description: Additional file 7: Table S4. A549 proteins identified. List of all proteins identified in A549 cells or A549 cells infected for various times with ChAdOx1 nCoV-19.
DOI: 10.6084/m9.figshare.14221061
title: Additional file 8 of SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription

description: Additional file 8: Table S5. A549 phosphoproteins identified. List of all phosphoproteins identified in A549 cells or A549 cells infected for various times with ChAdOx1 nCoV-19.
DOI: 10.6084/m9.figshare.14221061.v1
title: Additional file 8 of SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription

description: Additional file 8: Table S5. A549 phosphoproteins identified. List of all phosphoproteins identified in A549 cells or A549 cells infected for various times with ChAdOx1 nCoV-19.
DOI: 10.6084/m9.figshare.14221064
title: Additional file 9 of SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription

description: Additional file 9: Table S6. MRC5 proteins identified. List of all proteins identified in MRC5 cells or MRC5 cells infected for various times with ChAdOx1 nCoV-19.
DOI: 10.6084/m9.figshare.14221064.v1
title: Additional file 9 of SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription

description: Additional file 9: Table S6. MRC5 proteins identified. List of all proteins identified in MRC5 cells or MRC5 cells infected for various times with ChAdOx1 nCoV-19.
DOI: 10.6084/m9.figshare.14221055.v1
title: Additional file 6 of SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription

description: Additional file 6: Table S3. HEK293 transcript groups. An excel spreadsheet describing the structure of all ChAdOx1 nCoV19 derived transcript groups identified and how many transcripts belong to each group. In addition, it also describes what features are present on each transcript group. This list is the combined data from all time points in 293 cells.
DOI: 10.6084/m9.figshare.14221058.v1
title: Additional file 7 of SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription

description: Additional file 7: Table S4. A549 proteins identified. List of all proteins identified in A549 cells or A549 cells infected for various times with ChAdOx1 nCoV-19.
DOI: 10.15468/bus8df
title: Coenoflora of Carici iljinii-Pinetum sibiricae var. Betula rotundifolia Ermakov 2014 communities, recorded along the Abaza-Ak-Dovurak route

description: The dataset includes the list of plant species registered in 7 releves of association Carici iljinii-Pinetum sibiricae var. Betula rotundifolia made along the Abaza-Ak-Dovurak route. These forests prevail in the upper part of the forest belt on both (northern and southern) macroscopes of the western part of the West Sayan. The tree layer is composed of Pinus sibirica; due to the lack of warmth trees are low and more sparse: their height is 10-14 m, density - 0.4-0.5. Betula rotundifolia dominates in the shrub layer. The sparse herb-shrub layer is made up of patches of Vaccinium myrtillis, Empetrum nigrum and rare shoots of Carex iljinii, Festuca sphagnicola. Moss-lichen layer is thick and composed of Pleurozium schreberi, Hylocomium splendens, Polytrichum commune, Cladonia stellaris, C. arbuscula, and C. rangiferina. *For mosses and lichens, only the most widespread species are included in the list.
DOI: 10.26195/gr8b-gx87
title: Visual Effects Industry Interview Data

description: The interview data set explores records and archiving practices in the film and television visual effects industry. The data set is accompanied by the interview questionnaire and background information about the interview approach.
DOI: 10.5281/zenodo.4601616
title: GraphEM-infilled HadCRUT4.6.0.0 January 1850 - December 2017

description: Here are the GraphEM-infilled HadCRUT4.6 surface temperature anomaly data. This interpolated dataset presents a spatially-complete, global surface temperature product dating back to 1850 AD. The procedure used to generate these data is described in Climate field completion via Markov random fields - Application to the HadCRUT4.6 temperature dataset (Vaccaro et al., 2021). Included are the GraphEM-infilled HadCRUT4.6 median on a 5° x 5° grid as well as monthly and annual global and hemispheric means.
DOI: 10.5281/zenodo.4601615
title: GraphEM-infilled HadCRUT4.6.0.0 January 1850 - December 2017

description: Here are the GraphEM-infilled HadCRUT4.6 surface temperature anomaly data. This interpolated dataset presents a spatially-complete, global surface temperature product dating back to 1850 AD. The procedure used to generate these data is described in Climate field completion via Markov random fields - Application to the HadCRUT4.6 temperature dataset (Vaccaro et al., 2021). Included are the GraphEM-infilled HadCRUT4.6 median on a 5° x 5° grid as well as monthly and annual global and hemispheric means.
DOI: 10.5281/zenodo.4442984
title: Outline data for Aterian tanged tools from North African collections

description: Thresholded photographs of Aterian tanged tools from various collections, each accompanied by its extracted outline in text format.
DOI: 10.5281/zenodo.4442171
title: Excavating Flemish Archaeological Texts

description: We have applied a number of innovative quantitative research methods to all archaeological literature produced during the period 1945-2017 about the territory of Belgium. Only literature in Dutch was selected for this study since multilingual analysis would have gone beyond the scope of this research. Over 4,500 archaeological documents were included in this study, totaling over 51 million words. All types of documents were assessed ranging from monographs, journal articles to published excavation reports. In order to prevent copyright infringement, we removed all conjunctions, articles, and all words smaller than 4 letters. Additionally, we included a stoplist and all available metadata that is necessary to replicate the research.
DOI: 10.5281/zenodo.4442983
title: Outline data for Aterian tanged tools from North African collections

description: Thresholded photographs of Aterian tanged tools from various collections, each accompanied by its extracted outline in text format.
DOI: 10.5281/zenodo.4382192
title: SPARC_Landscape Research Centre Archive_2020

description: The Landscape Research Centre, led by Dominic Powlesland, was registered as a charity in 1980 (Registered Charity number 326710 - Registered Company number 01852824) to promote research into the evolution of the landscape from the Palaeolithic to the present, and to publish the results. Most work so far has been under the banner of the Heslerton Parish Project, a research framework established in 1980 to provide a research context for a series of large, seasonal, open-area rescue excavations undertaken ahead of mineral extraction in the Vale of Pickering in eastern Yorkshire. The LRC is undertaking remote-sensing projects employing established technologies that include air photography and ground-based geophysics, as well as new technologies such as thermal and multi-spectral surveys designed to identify the physical resources relating to human occupation of the landscape without physical intervention. In addition, the LRC carries out large scale rescue archaeology and smaller research projects, investigating sites threatened through mineral extraction, agriculture and drainage schemes which have a significant but less visible impact on the archaeological resource than, for instance, the redevelopment of our urban centres. The dataset published here (and viewable online through the LRC's interactive map) includes the magnetometry/gradiometry outputs in georeferenced tiff files, the inundation levels for the region in georeferenced tiff files, the extent of the sands and gravels in the region in georeferenced tiff files, and the polyline interpretation of the various datasets in geojson files. Though the original files were produced in OSGB-36, two projections have been archived for each file: OSGB-36 EPSG 27700 and WGS-84 EPSG 4326.
DOI: 10.5281/zenodo.4382191
title: SPARC_Landscape Research Centre Archive_2020

description: The Landscape Research Centre, led by Dominic Powlesland, was registered as a charity in 1980 (Registered Charity number 326710 - Registered Company number 01852824) to promote research into the evolution of the landscape from the Palaeolithic to the present, and to publish the results. Most work so far has been under the banner of the Heslerton Parish Project, a research framework established in 1980 to provide a research context for a series of large, seasonal, open-area rescue excavations undertaken ahead of mineral extraction in the Vale of Pickering in eastern Yorkshire. The LRC is undertaking remote-sensing projects employing established technologies that include air photography and ground-based geophysics, as well as new technologies such as thermal and multi-spectral surveys designed to identify the physical resources relating to human occupation of the landscape without physical intervention. In addition, the LRC carries out large scale rescue archaeology and smaller research projects, investigating sites threatened through mineral extraction, agriculture and drainage schemes which have a significant but less visible impact on the archaeological resource than, for instance, the redevelopment of our urban centres. The dataset published here (and viewable online through the LRC's interactive map) includes the magnetometry/gradiometry outputs in georeferenced tiff files, the inundation levels for the region in georeferenced tiff files, the extent of the sands and gravels in the region in georeferenced tiff files, and the polyline interpretation of the various datasets in geojson files. Though the original files were produced in OSGB-36, two projections have been archived for each file: OSGB-36 EPSG 27700 and WGS-84 EPSG 4326.
DOI: 10.5281/zenodo.3964709
title: MALDI-TOF-MS reference spectra and sequence data for African bovid collagen for Zooarchaeology by Mass Spectrometry (ZooMS)

description: MALDI-TOF-MS spectra of extracted collagen from modern African bovids used as reference spectra to develop markers for Zooarchaeology by Mass Spectrometry (ZooMS). Some of this material was also analyzed by LC-MS/MS. That data can be found at MassIVE MSV000084675 (doi:10.25345/C5239K). Information about the species of the samples can be found in Key for Labels.csv file. The sequence data contains annotated alignments of the proteins COL1A1 and COL1A2 and the alignments for the available bovid collagen protein sequences. More information on these files can be found in the corresponding manuscript to this dataset.
DOI: 10.5281/zenodo.3964708
title: MALDI-TOF-MS reference spectra and sequence data for African bovid collagen for Zooarchaeology by Mass Spectrometry (ZooMS)

description: MALDI-TOF-MS spectra of extracted collagen from modern African bovids used as reference spectra to develop markers for Zooarchaeology by Mass Spectrometry (ZooMS). Some of this material was also analyzed by LC-MS/MS. That data can be found at MassIVE MSV000084675 (doi:10.25345/C5239K). Information about the species of the samples can be found in Key for Labels.csv file. The sequence data contains annotated alignments of the proteins COL1A1 and COL1A2 and the alignments for the available bovid collagen protein sequences. More information on these files can be found in the corresponding manuscript to this dataset.
DOI: 10.3886/e110902v1-81380
title: Bubbly Recessions (AEJ:M 2019) Code

description: We develop a tractable bubbles model with financial friction and downward wage rigidity. Competitive speculation in risky bubbles can result in excessive investment booms that precede inefficient busts, where post-bubble aggregate economic activities collapse below the pre-bubble trend. Risky bubbles can reduce ex-ante social welfare, and leaning-against-the-bubble policies that balance the boom-bust trade-off can be warranted. We further show that the collapse of a bubble can push the economy into a "secular stagnation" equilibrium, where the zero lower bound and the nominal wage rigidity constraint bind, leading to a persistent recession, such as the Japanese "lost decades."
description: Smallest Geographic Unit: Japan
DOI: 10.5281/zenodo.3971142
title: MALDI-TOF-MS archaeological spectra and for African bovid collagen for Zooarchaeology by Mass Spectrometry (ZooMS) from Zambia

description: The MALDI data for archaeological samples from Zambia. The spectra are all in the folder in .mzml format. The samples are labeled the same as in the corresponding manuscript. The modern African bovid spectra that were used to determine markers can be found at Zenodo doi:10.5281/zenodo.3964709.
DOI: 10.5281/zenodo.3971141
title: MALDI-TOF-MS archaeological spectra and for African bovid collagen for Zooarchaeology by Mass Spectrometry (ZooMS) from Zambia

description: The MALDI data for archaeological samples from Zambia. The spectra are all in the folder in .mzml format. The samples are labeled the same as in the corresponding manuscript. The modern African bovid spectra that were used to determine markers can be found at Zenodo doi:10.5281/zenodo.3964709.
DOI: 10.6084/m9.figshare.14220798
title: Additional file 1 of PDX models reflect the proteome landscape of pediatric acute lymphoblastic leukemia but divert in select pathways

description: Additional file 1.
DOI: 10.3886/e116199v1-81381
title: Replication data for: Missing Growth from Creative Destruction

description: For exiting products, statistical agencies often impute inflation from surviving products. This understates growth if creatively-destroyed products improve more than surviving ones. If so, then the market share of surviving products should systematically shrink. Using entering and exiting establishments to proxy for creative destruction, we estimate missing growth in US Census data on non-farm businesses from 1983 to 2013. We find missing growth (i) equaled about one-half a percentage point per year; (ii) arose mostly from hotels and restaurants rather than manufacturing; and (iii) did not accelerate much after 2005, and therefore does not explain the sharp slowdown in growth since then.
DOI: 10.6084/m9.figshare.14221367
title: Regions of interest for automated bundle recognition of optic radiations

description: Regions of interest in MNI space used for automated bundle segmentation of optic radiations.
DOI: 10.6084/m9.figshare.14221367.v1
title: Regions of interest for automated bundle recognition of optic radiations

description: Regions of interest in MNI space used for automated bundle segmentation of optic radiations.
DOI: 10.6084/m9.figshare.13565222.v1
title: National cohort-component population projection model

description: This workbook illustrates a national cohort-component population projection model using the example of Australia. It accompanies the paper "A brief guide to producing a national population projection" by Tom Wilson and Phil Rees.
DOI: 10.6084/m9.figshare.13565222
title: National cohort-component population projection model

description: This workbook illustrates a national cohort-component population projection model using the example of Australia. It accompanies the paper "A brief guide to producing a national population projection" by Tom Wilson and Phil Rees.
DOI: 10.6084/m9.figshare.13565222.v2
title: National cohort-component population projection model

description: This workbook illustrates a national cohort-component population projection model using the example of Australia. It accompanies the paper "A brief guide to producing a national population projection" by Tom Wilson and Phil Rees.
DOI: 10.6084/m9.figshare.5913181.v8
title: Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

description: The Protist Ribosomal Reference database (PR<sup>2</sup>) provides a unique access to eukaryotic small sub-unit (SSU) ribosomal RNA and DNA sequences, with curated taxonomy. The database mainly consists of nuclear-encoded protistan sequences. However, metazoans, land plants, macrosporic fungi and eukaryotic organelles (mitochondrion, plastid and others) are also included because they are useful for the analysis of high-troughput sequencing data sets. Introns and putative chimeric sequences have been also carefully checked. Taxonomic assignation of sequences consists of eight unique taxonomic fields.<br><br>The database is now synchronized on <b>Github </b>for easier maintenance. Please go to the GitHub site to download the files you need.<br><br>Latest version 4.12.0 (8 August 2019, updated 17 August 2019)<br><b>Home page</b>https://github.com/pr2database/pr2database<br><br><b>Latest version of files</b>https://github.com/pr2database/pr2database/releases<br><br><b>Information</b>https://pr2-database.org/<br><br><b>Reports problems and bugs</b>https://github.com/pr2database/pr2database/issues<br><br><b>Contact<br><br></b>Daniel VAULOT, Laure GUILLOU<br>DIPO team, Plankton Group, UMR 7144 CNRS-UPMC<br>Station Biologique,<br>Place G. Tessier<br>29680 Roscoff FRANCE<br>email: vaulot@sb-roscoff.fr<br><br><b>Please cite</b><br>Guillou, L., Bachar, D., Audic, S., Bass, D., Berney, C., Bittner, L., Boutte, C. et al. 2013. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. <i>Nucleic Acids Res.</i> 41:D597–604.<br>
DOI: 10.6084/m9.figshare.14221703
title: Supplementary Material for: Homogeneously Staining Regions (HSR) in Chromosome 1 of the House Mouse: Synapsis and Recombination at Meiosis

description: Amplified sequences constitute a large part of mammalian genomes. A chromosome 1 containing 2 large (up to 50 Mb) homogeneously staining regions (HSRs) separated by a small inverted euchromatic region is present in many natural populations of the house mouse (<i>Mus musculus musculus</i>). The HSRs are composed of a long-range repeat cluster, <i>Sp100-rs</i>, with a repeat length of 100 kb. In order to understand the organization and function of HSRs in meiotic chromosomes, we examined synapsis and recombination in male mice hetero- and homozygous for the HSR-carrying chromosome using FISH with an HSR-specific DNA probe and immunolocalization of the key meiotic proteins. In all homozygous and heterozygous pachytene nuclei, we observed fully synapsed linear homomorphic bivalents 1 marked by the HSR FISH probe. The synaptic adjustment in the heterozygotes was bilateral: the HSR-carrying homolog was shortened and the wild-type homolog was elongated. The adjustment was reversible: desynapsis at diplotene was accompanied by elongation of the HSRs. Immunolocalization of H3K9me2/3 indicated that the HSRs in the meiotic chromosome retained the epigenetic modification typical for C-heterochromatin in somatic cells. MLH1 foci, marking mature recombination nodules, were detected in the proximal HSR band in heterozygotes and in both HSR bands of homozygotes. Unequal crossing over within the long-range repeat cluster can cause variation in size of the HSRs, which has been detected in the natural populations of the house mouse.
DOI: 10.6084/m9.figshare.14221715.v1
title: Table S1.pdf

description: Data matrix used in the meta-analysis of "Differential effects of altered precipitation regimes on soil carbon dynamics in arid and humid terrestrial ecosystems"
DOI: 10.6084/m9.figshare.14221754
title: Supplementary Material for: Muscle Tone Assessment under General Anesthesia for Sjögren-Larsson Syndrome and Spasticity

description: <b><i>Introduction:</i></b> Study of muscle tone in individuals with severe spasticity (Modified Asworth Scale – MAS:3) under general anesthesia can confirm or rule out the eventual necessity of the impending spasticity relieving ablative neurosurgery by observing the hypertonia reduction and passive range of motion expansion. Therefore, what we measure under muscle relaxants is practically a fixed deformity. <b><i>Case Presentation:</i></b> The study was performed on a girl with Sjögren-Larsson syndrome, presenting with icthyosis and spastic diplegia. Proposed intervention was Dorsal Rhizotomy. Under general anesthesia, with and without muscle relaxants, hypertonia was significantly reduced (MAS:1), but the angle of motion did not increase much. <b><i>Conclusion:</i></b> We decided not to perform such a neurosurgical procedure. In ambiguous situations, the proposed study can help in decision-making for spasticity treatment.