cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11627952
title: YB-3 substitutes YB-1 in global mRNA binding

description: Y-box binding proteins are DNA- and RNA-binding proteins with an evolutionarily ancient and conserved cold shock domain. The Y-box binding protein 1 (YB-1) is the most studied due to its abundance in somatic cells. YB-1 is involved in a variety of cellular processes, including proliferation, differentiation and stress response. Here, using Ribo-Seq and RIP-Seq we confirm that YB-1 binds a wide range of mRNAs and globally acts as a translation inhibitor. Surprisingly, <i>YBX1</i> knockout results in only minor alterations in the expression of other genes, mostly caused by changes in RNA abundance. But <i>YB-3 </i>mRNA is an exception: it is better translated in the absence of YB-1, thereby producing an increased amount of YB-3 and thus suggesting that its synthesis is under YB-1 negative control. We have shown that the set of mRNAs bound to YB-3 is strikingly similar to that of YB-1, and that the mRNA-binding by YB-3 is enhanced in the absence of YB-1, resulting in a similar global reduction of translation of bound mRNAs in YB-1-null cells. Thus, YB-3 acts as a substitute for YB-1 in mRNA binding and, probably, in global translational control.
DOI: 10.6084/m9.figshare.11627775
title: Allyl isothiocyanate (AITC) trigged morphological, sensing process and transcription profiling alternation in Fusarium solani

description: Raw data in Figures or Tables
DOI: 10.6084/m9.figshare.11627775.v2
title: Allyl isothiocyanate (AITC) trigged morphological, sensing process and transcription profiling alternation in Fusarium solani

description: Raw data in Figures or Tables
DOI: 10.6084/m9.figshare.11627775.v1
title: Allyl isothiocyanate (AITC) trigged morphological, sensing process and transcription profiling alternation in Fusarium solani

description: Raw data in Figures or Tables
DOI: 10.6084/m9.figshare.11627589
title: Topaz geneva rootstock trial field data 2011 -18.xlsx

description: The apple replanting disease (ARD) is a major problem in replanted apple orchards. Depressions in growth and yield are symptomatic and mainly caused by nematodes (<i>Pratylenchus</i>) and soil borne funghi <i>(e.g. Rhizoctonia</i>, <i>Phytophthora</i>, <i>Pythium).</i>For organic growers, besides bio-fumigation the use of tolerant rootstocks has been discussing to be an efficient way to prevent ARD. The purpose of this study was the evaluation of some rootstocks from Geneva in an organically treated replanted apple orchard, compared with the standard M9 and also with the stronger rootstocks M7 and MM111, which have been discussing the last years as alternatives for organic growers for extensive production systems. <br>
DOI: 10.6084/m9.figshare.11627589.v1
title: Topaz geneva rootstock trial field data 2011 -18.xlsx

description: The apple replanting disease (ARD) is a major problem in replanted apple orchards. Depressions in growth and yield are symptomatic and mainly caused by nematodes (<i>Pratylenchus</i>) and soil borne funghi <i>(e.g. Rhizoctonia</i>, <i>Phytophthora</i>, <i>Pythium).</i>For organic growers, besides bio-fumigation the use of tolerant rootstocks has been discussing to be an efficient way to prevent ARD. The purpose of this study was the evaluation of some rootstocks from Geneva in an organically treated replanted apple orchard, compared with the standard M9 and also with the stronger rootstocks M7 and MM111, which have been discussing the last years as alternatives for organic growers for extensive production systems. <br>
DOI: 10.6084/m9.figshare.11627580
title: F_sultana_all_contigs_copy_v2.fsa

description: F. sultana transcriptome containing 85,532 contigs generated by de novo transcriptome assembly of RNA-seq data
DOI: 10.6084/m9.figshare.11627475
title: Supplementary table S11

description: Supplementary table S11 in "xlsx" format for article "Mutation enrichment and transcriptomic activation signatures of 419 molecular pathways in cancer" in journal "Cancers"
DOI: 10.6084/m9.figshare.11627475.v1
title: Supplementary table S11

description: Supplementary table S11 in "xlsx" format for article "Mutation enrichment and transcriptomic activation signatures of 419 molecular pathways in cancer" in journal "Cancers"
DOI: 10.6084/m9.figshare.11627460
title: frog gut microbiome

description: The frog gut microbiome
DOI: 10.6084/m9.figshare.11627436
title: Supplementary_Table_S11.csv

description: Supplementary table S11 in "csv" format for article "Mutation enrichment and transcriptomic activation signatures of 419 molecular pathways in cancer" in journal "Cancers"
DOI: 10.6084/m9.figshare.11627403
title: Supplementary Material for: Individualized Homeopathic Treatment in Women with Recurrent Cystitis: A Retrospective Case Series

description: <b><i>Background:</i></b> Recurrent urinary tract infections are of importance for public health as most clinicians are faced with repeated and long-term administration of broad-spectrum antimicrobial agents leading to an increased risk of resistant bacteria. One encouraging treatment approach may be individualized homeopathy. <b><i>Case Reports:</i></b> Here, four female cases with recurrent urinary tract infections are reported. They were treated successfully with the homeopathic strategy after several conventional approaches revealed no improvement. The follow-up period was a minimum of 3 years and the frequency of episodes with urinary tract infection as well as of antibiotic treatment was documented. Additionally, the patients were asked to assess the treatment outcome retrospectively in a validated questionnaire. <b><i>Results:</i></b> The treatment resulted in a reduction of urinary tract infections and the need for antibiotics from monthly to less than 3 times a year. Three of the four women had no cystitis and related intake of antibiotics for more than 1.5 years. A relapse of symptoms could be treated efficiently with a repetition of the homeopathic remedy. All subjective outcome assessments resulted positive. <b><i>Conclusion:</i></b> This case series suggests a possible benefit of individualized homeopathic treatment for female patients with recurrent urinary tract infections. Larger observational studies and controlled investigations are warranted.
DOI: 10.6084/m9.figshare.11627436.v1
title: Supplementary_Table_S11.csv

description: Supplementary table S11 in "csv" format for article "Mutation enrichment and transcriptomic activation signatures of 419 molecular pathways in cancer" in journal "Cancers"
DOI: 10.6084/m9.figshare.11627403.v1
title: Supplementary Material for: Individualized Homeopathic Treatment in Women with Recurrent Cystitis: A Retrospective Case Series

description: <b><i>Background:</i></b> Recurrent urinary tract infections are of importance for public health as most clinicians are faced with repeated and long-term administration of broad-spectrum antimicrobial agents leading to an increased risk of resistant bacteria. One encouraging treatment approach may be individualized homeopathy. <b><i>Case Reports:</i></b> Here, four female cases with recurrent urinary tract infections are reported. They were treated successfully with the homeopathic strategy after several conventional approaches revealed no improvement. The follow-up period was a minimum of 3 years and the frequency of episodes with urinary tract infection as well as of antibiotic treatment was documented. Additionally, the patients were asked to assess the treatment outcome retrospectively in a validated questionnaire. <b><i>Results:</i></b> The treatment resulted in a reduction of urinary tract infections and the need for antibiotics from monthly to less than 3 times a year. Three of the four women had no cystitis and related intake of antibiotics for more than 1.5 years. A relapse of symptoms could be treated efficiently with a repetition of the homeopathic remedy. All subjective outcome assessments resulted positive. <b><i>Conclusion:</i></b> This case series suggests a possible benefit of individualized homeopathic treatment for female patients with recurrent urinary tract infections. Larger observational studies and controlled investigations are warranted.
DOI: 10.6084/m9.figshare.11627397
title: Metadata record for: RNA proximity sequencing data and analysis pipeline from a human neuroblastoma nuclear transcriptome

description: This dataset contains key characteristics about the data described in the Data Descriptor RNA proximity sequencing data and analysis pipeline from a human neuroblastoma nuclear transcriptome. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <b><br></b><b><br></b>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11627379
title: Data_demux.zip

description: Dataset for the demultiplexer study based on parallel-plate-waveguides for the terahertz range.<br>
DOI: 10.6084/m9.figshare.11627397.v2
title: Metadata record for: RNA proximity sequencing data and analysis pipeline from a human neuroblastoma nuclear transcriptome

description: This dataset contains key characteristics about the data described in the Data Descriptor RNA proximity sequencing data and analysis pipeline from a human neuroblastoma nuclear transcriptome. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <b><br></b><b><br></b>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11627379.v1
title: Data_demux.zip

description: Dataset for the demultiplexer study based on parallel-plate-waveguides for the terahertz range.<br>
DOI: 10.6084/m9.figshare.11627397.v1
title: Metadata record for: RNA proximity sequencing data and analysis pipeline from a human neuroblastoma nuclear transcriptome

description: This dataset contains key characteristics about the data described in the Data Descriptor RNA proximity sequencing data and analysis pipeline from a human neuroblastoma nuclear transcriptome. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11627316
title: Crustal growth of Eastern Dharwar Craton: a Neoarchean collisional orogeny?

description: Supplemental Table 1: Available age data for the magmatic rocks of Dharwar Craton
DOI: 10.6084/m9.figshare.11627313
title: Crustal growth of Eastern Dharwar Craton: a Neoarchean collisional orogeny?

description: Supplemental Table 3: Whole rock Sm–Nd isotopic data for the granitoids of Eastern Dharwar Craton
DOI: 10.6084/m9.figshare.11627316.v1
title: Crustal growth of Eastern Dharwar Craton: a Neoarchean collisional orogeny?

description: Supplemental Table 1: Available age data for the magmatic rocks of Dharwar Craton
DOI: 10.6084/m9.figshare.11627310
title: Crustal growth of Eastern Dharwar Craton: a Neoarchean collisional orogeny?

description: Supplemental Table 2: Geochemical compositions for the granitoids of Eastern Dharwar Craton (hybrid granites)
DOI: 10.6084/m9.figshare.11627313.v1
title: Crustal growth of Eastern Dharwar Craton: a Neoarchean collisional orogeny?

description: Supplemental Table 3: Whole rock Sm–Nd isotopic data for the granitoids of Eastern Dharwar Craton
DOI: 10.6084/m9.figshare.11627310.v1
title: Crustal growth of Eastern Dharwar Craton: a Neoarchean collisional orogeny?

description: Supplemental Table 2: Geochemical compositions for the granitoids of Eastern Dharwar Craton (hybrid granites)
DOI: 10.6084/m9.figshare.11627262
title: Simulated zero-crossing wave period (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment r1i1p1f1

description: Simulated zero-crossing wave period (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment (CO2 abruptly quadrupled and then held constant) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627262.v1
title: Simulated zero-crossing wave period (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment r1i1p1f1

description: Simulated zero-crossing wave period (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment (CO2 abruptly quadrupled and then held constant) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627250
title: Simulated spectrum peak wave period (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment r1i1p1f1

description: Simulated spectrum peak wave period (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment (CO2 abruptly quadrupled and then held constant) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627241
title: Simulated mean wave direction (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment r1i1p1f1

description: Simulated mean wave direction (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment (CO2 abruptly quadrupled and then held constant) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627250.v1
title: Simulated spectrum peak wave period (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment r1i1p1f1

description: Simulated spectrum peak wave period (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment (CO2 abruptly quadrupled and then held constant) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627232
title: Simulated significant wave height (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment r1i1p1f1

description: Simulated significant wave height (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment (CO2 abruptly quadrupled and then held constant) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627241.v1
title: Simulated mean wave direction (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment r1i1p1f1

description: Simulated mean wave direction (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment (CO2 abruptly quadrupled and then held constant) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627232.v1
title: Simulated significant wave height (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment r1i1p1f1

description: Simulated significant wave height (monthly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment (CO2 abruptly quadrupled and then held constant) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627217
title: Simulated zero-crossing wave period (monthly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated zero-crossing wave period (monthly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627226
title: Staphylococcus aureus core genome coordinates on the ST30 strain MRSA252

description: This file contains the genomic coordinates of the <i>Staphylococcus aureus</i> species core-genome, derived from a collection of 800 <i>S. aureus</i> strains from multiple host species<sup>1</sup> using Roary<sup>2</sup>, on the clonal complex 30 <i>Staphylococcus aureus</i> reference genome (Genbank accession number BX571856).<br><sup>1</sup> Richardson EJ, Bacigalupe R, Harrison EM, Weinert LA, Lycett S, Vrieling M, Robb K, Hoskisson PA, Holden MTG, Feil EJ, et al. 2018. Gene exchange drives the ecological success of a multi-host bacterial pathogen. <i>Nature Ecology & Evolution</i>.<br><sup>2</sup> Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MTG, Fookes M, Falush D, Keane JA, Parkhill J. 2015. Roary: rapid large-scale prokaryote pan genome analysis. <i>Bioinformatics</i> <b>31</b>: 3691–3693.
DOI: 10.6084/m9.figshare.11627217.v1
title: Simulated zero-crossing wave period (monthly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated zero-crossing wave period (monthly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627226.v1
title: Staphylococcus aureus core genome coordinates on the ST30 strain MRSA252

description: This file contains the genomic coordinates of the <i>Staphylococcus aureus</i> species core-genome, derived from a collection of 800 <i>S. aureus</i> strains from multiple host species<sup>1</sup> using Roary<sup>2</sup>, on the clonal complex 30 <i>Staphylococcus aureus</i> reference genome (Genbank accession number BX571856).<br><sup>1</sup> Richardson EJ, Bacigalupe R, Harrison EM, Weinert LA, Lycett S, Vrieling M, Robb K, Hoskisson PA, Holden MTG, Feil EJ, et al. 2018. Gene exchange drives the ecological success of a multi-host bacterial pathogen. <i>Nature Ecology & Evolution</i>.<br><sup>2</sup> Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MTG, Fookes M, Falush D, Keane JA, Parkhill J. 2015. Roary: rapid large-scale prokaryote pan genome analysis. <i>Bioinformatics</i> <b>31</b>: 3691–3693.
DOI: 10.6084/m9.figshare.11627199
title: Simulated spectrum peak wave period (monthly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated spectrum peak wave period (monthly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627199.v1
title: Simulated spectrum peak wave period (monthly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated spectrum peak wave period (monthly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11627190
title: Computed tomography data: marsupial patellae

description: CT and microCT (XMT) scan datasets (.zip archives) for specimens from this study:Denyer AL, Regnault S, Hutchinson JR. In review. Evolution of the patella and patelloid in marsupial mammals. PeerJ.<br>UMZC specimen numbers are on folder names.See the Supplementary Text of the paper for further details.
DOI: 10.6084/m9.figshare.11627193
title: Staphylococcus aureus core genome coordinates on the ST22 strain HO 5096 0412

description: This file contains the genomic coordinates of the <i>Staphylococcus aureus</i> species core-genome, derived from a collection of 800 <i>S. aureus</i> strains from multiple host species<sup>1</sup> using Roary<sup>2</sup>, on the clonal complex 22 S. aureus reference genome (Genbank accession number HE681097).<br><sup>1</sup> Richardson EJ, Bacigalupe R, Harrison EM, Weinert LA, Lycett S, Vrieling M, Robb K, Hoskisson PA, Holden MTG, Feil EJ, et al. 2018. Gene exchange drives the ecological success of a multi-host bacterial pathogen. <i>Nature Ecology & Evolution</i>.<br><sup>2</sup> Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MTG, Fookes M, Falush D, Keane JA, Parkhill J. 2015. Roary: rapid large-scale prokaryote pan genome analysis. <i>Bioinformatics</i> <b>31</b>: 3691–3693.
DOI: 10.6084/m9.figshare.11627190.v1
title: Computed tomography data: marsupial patellae

description: CT and microCT (XMT) scan datasets (.zip archives) for specimens from this study:Denyer AL, Regnault S, Hutchinson JR. In review. Evolution of the patella and patelloid in marsupial mammals. PeerJ.<br>UMZC specimens numbers are on folder names.See the Supplementary Text of the paper for further details.
DOI: 10.6084/m9.figshare.11627190.v2
title: Computed tomography data: marsupial patellae

description: CT and microCT (XMT) scan datasets (.zip archives) for specimens from this study:Denyer AL, Regnault S, Hutchinson JR. In review. Evolution of the patella and patelloid in marsupial mammals. PeerJ.<br>UMZC specimens numbers are on folder names.See the Supplementary Text of the paper for further details.
DOI: 10.6084/m9.figshare.11627193.v1
title: Staphylococcus aureus core genome coordintes on the ST22 strain HO 5096 0412

description: This file contains the genomic coordinates of the <i>Staphylococcus aureus</i> species core-genome, derived from a collection of 800 <i>S. aureus</i> strains from multiple host species<sup>1</sup> using Roary, on the clonal complex 22 S. aureus reference genome (Genbank accession number HE681097).<br><sup>1</sup> Richardson EJ, Bacigalupe R, Harrison EM, Weinert LA, Lycett S, Vrieling M, Robb K, Hoskisson PA, Holden MTG, Feil EJ, et al. 2018. Gene exchange drives the ecological success of a multi-host bacterial pathogen. <i>Nature Ecology & Evolution</i>.
DOI: 10.6084/m9.figshare.11627190.v3
title: Computed tomography data: marsupial patellae

description: CT and microCT (XMT) scan datasets (.zip archives) for specimens from this study:Denyer AL, Regnault S, Hutchinson JR. In review. Evolution of the patella and patelloid in marsupial mammals. PeerJ.<br>UMZC specimens numbers are on folder names.See the Supplementary Text of the paper for further details.
DOI: 10.6084/m9.figshare.11627190.v4
title: Computed tomography data: marsupial patellae

description: CT and microCT (XMT) scan datasets (.zip archives) for specimens from this study:Denyer AL, Regnault S, Hutchinson JR. In review. Evolution of the patella and patelloid in marsupial mammals. PeerJ.<br>UMZC specimen numbers are on folder names.See the Supplementary Text of the paper for further details.
DOI: 10.6084/m9.figshare.11627175
title: Simulated mean wave direction (monthly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated mean wave direction (monthly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.