cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.578j2/3
title: Matlab files to perform blade element analyses and simulations

description: These Matlab files were used for performing the blade element analyses and associated simulations.
DOI: 10.5061/dryad.578j2/4
title: Explanation of computational fluid dynamics files
DOI: 10.5061/dryad.578j2/6
title: flntgz5: See Explanation of Files for CFD analysis
DOI: 10.5061/dryad.578j2/7
title: flntgz42: See Explanation of Files for CFD analysis
DOI: 10.5061/dryad.578j2/8
title: flntgz62:See Explanation of Files for CFD analysis
DOI: 10.5061/dryad.578j2/9
title: flntgz43:See Explanation of Files for CFD analysis
DOI: 10.5061/dryad.74p78/1
title: Census and vegetation cover data

description: Field-collected data. Consult the ReadMe_SurveyData file for more information.
DOI: 10.5061/dryad.74p78/2
title: Seed Bank evaluation

description: Greenhouse-collected data to test for the presence of a soil seed bank for Mercurialis annua at censused study sites in the Iberian Peninsula and northwest Africa.
DOI: 10.5061/dryad.7t3t3/1
title: Movement of individual perch in November 2010

description: Coordinates of individual perch recorded at every 3 minutes (15 - 28 November 2010). The columns are (1) unique individual ID, (2) x coordinate, (3) y coordinate, (4) day or night (0 or 1), (5) location-specific standard deviation of the measurement.
DOI: 10.5061/dryad.7t3t3/2
title: Movement of individual perch in January 2011

description: Coordinates of individual perch recorded at every 3 minutes (15 - 28 January 2011). The columns are (1) unique individual ID, (2) x coordinate, (3) y coordinate, (4) day or night (0 or 1), (5) location-specific standard deviation of the measurement.
DOI: 10.5061/dryad.9kp7d/1
title: Supplemental Data Set 1

description: List of accessions of SEPALLATA-like, APETALA3- and PISTILLATA-like, AGAMOUS- and SEEDSTICK-like genes used for dating the E-class duplication.
DOI: 10.5061/dryad.b84nh/1
title: Radius VGL file

description: Can be opened with vgsutiomax for reconstruction of the radius.
DOI: 10.5061/dryad.b84nh/2
title: Radius MCS file

description: Radius file that can be opened in using the mimics software. Can use to scroll through individual slices.
DOI: 10.5061/dryad.b84nh/3
title: Radius Scanning Parameters

description: Scanning parameters for the radius to be used in conjunction with CT reconstructive software
DOI: 10.5061/dryad.b84nh/4
title: Radius STL file

description: Reconstructed 3D model of the radius that can be opened using the freeware, MeshLab.
DOI: 10.5061/dryad.b84nh/5
title: Ulna VGL file

description: Can be opened with vgsutiomax for reconstruction of the ulna.
DOI: 10.5061/dryad.b84nh/6
title: Ulna STL file

description: Reconstructed 3D model of the ulna that can be opened using the freeware, MeshLab.
DOI: 10.5061/dryad.cv6n5/1
title: Supporting Information

description: GENBANK accession numbers and sequences, measurements of individual specimens
DOI: 10.5061/dryad.db78g.2/6.2
title: All_150

description: Alignment file; 150 genes; eukaryotes, bacteria and archaea
DOI: 10.5061/dryad.db78g.2/7.2
title: Euk_150

description: Alignment file; 150 genes; eukaryotes.
DOI: 10.5061/dryad.dh38n/1
title: Baltic Fucus populations genotypes_genets

description: Genotypes for 30 populations of Baltic Sea Fucus vesiculosus and Fucus radicans. This file contains only one individual per clone (all genets).
DOI: 10.5061/dryad.dh38n/2
title: Baltic Fucus populations genotypes_ramets

description: Genotypes of 30 populations of Baltic Sea Fucus vesiculosus and Fucus radicans. All individuals (including clone copies - ramets).
DOI: 10.5061/dryad.fr1r2/1
title: Figure 7

description: This archive contains the source for figure 7 A1 A2 A3 B2 B3.In the directory B2_B3, the matlab script fixedIPump_withNa_JustHCO.m produces an eps file containing the figures found in 7B2 and 7B3.In the directory A1_A2_A3, the matlab scrip trjHCO.m produces an eps file which contains the figures found in 7A1, 7A2, and 7A3.
DOI: 10.5061/dryad.gs6c8/1
title: Behav Ecol ms data

description: Lines crossed data for experiments 1 and 2 are in separate tabs.
DOI: 10.5061/dryad.j619s/1
title: Association matrix and individual supplementary details of Icelandic killer whales

description: First sheet with details for each individual (sex-age class, movement pattern, number of records - number of photographs -, number of total days sampled and number of different years seen). Second sheet with the association matrix for all individuals, no restrictions on the number of sightings, calculated using SOCPROG 2.6 software (half-weight index used).
DOI: 10.5061/dryad.m35k6/43
title: ModelSel_PAWR_2012_Detection

description: AIC model selection table and associated coefficients for Pacific wren 2012 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/44
title: ModelSel_PAWR_2013_Detection

description: AIC model selection table and associated coefficients for Pacific wren 2013 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/45
title: ModelSel_PSFL_2012_Detection

description: AIC model selection table and associated coefficients for Pacific-slope flycatcher 2012 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/46
title: ModelSel_PSFL_2013_Detection

description: AIC model selection table and associated coefficients for Pacific-slope flycatcher 2013 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/47
title: ModelSel_RBNU_2012_Detection

description: AIC model selection table and associated coefficients for red-breasted nuthatch 2012 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/48
title: ModelSel_RBNU_2013_Detection

description: AIC model selection table and associated coefficients for red-breasted nuthatch 2013 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/49
title: ModelSel_STJA_2012_Detection

description: AIC model selection table and associated coefficients for Steller's jay 2012 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/50
title: ModelSel_STJA_2013_Detection

description: AIC model selection table and associated coefficients for Steller's jay 2013 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m35k6/51
title: ModelSel_SWTH_2012_Detection

description: AIC model selection table and associated coefficients for Swainson's thrush 2012 for all detection models. Column names for the model coefficients use the following notation: coefficient = parameter(covariate) and standard error = SEparameter(covariate). Parameter abbreviations are p = detection probability, psi = initial occupancy, col = colonization/settlement, ext = extinction/vacancy. Parameter(Int) refers to the intercept. ‘nPars’ is the number of parameters estimated in the model. Each model is ranked by its AIC score, which represents how well the model fits the data. A lower ∆AIC (delta) value is indicative of a better model. The probability that the model (of the models tested) would best explain the data is indicated by AICwt.
DOI: 10.5061/dryad.m4q9f/1
title: PalauYapNgulu_000_exclTwice

description: Genodive file (can be used as text format) of the genotypes of the colonies of Acropora hyacinthus for Yap, Palau and Ngulu, coded with by the length of the STR (single tandem repeats).
DOI: 10.5061/dryad.m4q9f/2
title: YapPalauNgulu_ID000_excltwice

description: Genodive file (can be read in a text editor) of the genotypes of the colonies of Acropora hyacinthus for Palau, Yap and Ngulu, identified by their sequences (unique ID).
DOI: 10.5061/dryad.mt64k.1
title: Data from: Vascular patterns in the heads of crocodilians: blood vessels and sites of thermal exchange
DOI: 10.5061/dryad.mt64k.2/4.2
title: CT scan data of a freshwater crocodile, Crocodylus johnstoni (OUVC 10426)

description: This zip file contains DICOM images from an x-ray microcomputed tomography (µCT) scan of an injected Crocodylus johnstoni (OUVC 10426). The arteries and veins were injected with a latex and barium solution and scanned on a GE eXplore Locus in vivo Small Animal MicroCT scanner (90µm slice thickness at 80kV and 450 µA) at the Ohio University µCT Scanning Facility.
DOI: 10.5061/dryad.mt64k.2/5.2
title: 3D-PDF of American alligator, Alligator mississippiensis
DOI: 10.5061/dryad.p1k64/1
title: Orsini_etal_OHcore_SNPs

description: SNP genotyping results of the samples collected from the sediment core OH (Oud Heverlee, Belgium). The data in this file were obtained from D. magna resting eggs hatched and reared in the laboratory. Individual ID, location of the samples and the stress condition are shown. -9 indicates missing values.
DOI: 10.5061/dryad.p1k64/2
title: Orsini etal_LRV_Hatched_neutral_micros

description: microsatellite genotyping results of the samples collected from the sediment core LRV (Lake Ring, Denmark). The data in this file were obtained from D. magna resting eggs hatched and reared in the laboratory. Individual ID, location of the samples and the stress condition are shown. -9 indicates missing values.
DOI: 10.5061/dryad.p4s53/1
title: Consequences of habitat fragmentation

description: Raw data
DOI: 10.5061/dryad.pv18p/1
title: Mule deer targeted re-sequencing data
DOI: 10.5061/dryad.r2rc8/1
title: Data_Breeding_PygmyOwl

description: Data on pygmy owl breeding success according to habitat characteristics, prey abundance and both conspecifics and Tengmalm's owl densities. See the Read Me file for details.
DOI: 10.5061/dryad.s0k3h/1
title: Published_data

description: Data published in the manuscript and supplementary information
DOI: 10.5061/dryad.0062v/1
title: growth rate long
DOI: 10.5061/dryad.12np0/1
title: Data for all analysis of sibling rivalry across life

description: Each tab contains the data used for one analysis.
DOI: 10.5061/dryad.3b426/1
title: Data and R code

description: Raw data, R code, and other information required to reproduce the analyses, figures, and tables in Haber and Dworkin 2016: "Dis-integrating the fly: A mutational perspective on phenotypic integration and covariation."
DOI: 10.5061/dryad.3jn35/2
title: I Levin 2016 Biol Lett networks and attribute data
DOI: 10.5061/dryad.4k0q0/2
title: FASTA

description: fasta file for consensus sequences for each OTU
DOI: 10.5061/dryad.4k0q0/3
title: LatLongAxes

description: Input data, latitude, longitude, and PCA scores for each sample. PCA scores generated in JMP
DOI: 10.5061/dryad.4k0q0/4
title: Matrix50

description: input data, relative read abundance for top 50 OTUs. Used in PERMANOVA
DOI: 10.5061/dryad.4k0q0/5
title: RRA

description: input data, relative read abundance for samples. All OTUs.
DOI: 10.5061/dryad.4k0q0/6
title: OTULat

description: input data, data for graphs of relationships between read abundance and independent factors
DOI: 10.5061/dryad.4k0q0/7
title: Taxonomy

description: NCBI taxonomy of each OTU including the % identity of the sequence and the % coverage.
DOI: 10.5061/dryad.4k0q0/8
title: Treat

description: input data, day of year, crude protein, and digestible organic matter associated with each sample
DOI: 10.5061/dryad.578j2/13
title: mant_new_ACIS_May: See Explanation of Files for CFD analysis
DOI: 10.5061/dryad.60js5/3
title: speciesSpecificDivRate

description: R script for calculating the per-species diversification rate from Jetz et al. (2012)
DOI: 10.5061/dryad.60js5/4
title: richness_cladeAge_powerAnalysis

description: R script for replicating the statistical power analysis shown in Figure 3 of main text.
DOI: 10.5061/dryad.60js5/6
title: phylogenic trees

description: Macrophylogenies that were included in analyses.
DOI: 10.5061/dryad.60js5/7
title: TitleRabosky_Macrophylogenies_suppl

description: tables and figures
DOI: 10.5061/dryad.60js5/8
title: BAMM_files

description: control files and trees for BAMM analyses
DOI: 10.5061/dryad.6908r/1
title: Wollemia nobilis chloroplast primers and sequences

description: The data file contains primer sequences designed to verify putative SNPs in the chloroplast DNA of Wollemia nobilis. The sequences that contributed to each of the three chlorotypes characterised in the paper are included along with the position of the variant in the sequence (where one was detected).
DOI: 10.5061/dryad.6c8s6/1
title: Bt eggplant and NTOs in the Philippines_DataFile

description: The raw data file contains the total abundance data of NTAs obtained from confined field trials of Bt and non-Bt eggplants in Pangasinan, Philippines from 2010 - 2012. The raw data is in MS Excel file ready for statistical analysis contained in five sheets, namely: (1) CanopyNTA_Trial1, (2) CanopyNTA_Trial2, (3) CanopyNTA_Trial3, (4) SoilNTA_Trial1, and (5) SoilNTA_Trial2.
DOI: 10.5061/dryad.6m668/1
title: Presence Absence matrix

description: Distributions of  bird phenotypes of peninsular India that are either endemic, disjunctly distributed or those that have distinct race/subspecies within Indian Peninsula or Sri Lanka.
DOI: 10.5061/dryad.6rq0c/1
title: Morphometrics and disease parameters of common garden birds during a supplementary feeding experiment in Auckland, New Zealand

description: Morphometrics and disease parameters of house sparrows, silvereyes, and Eurasian blackbirds captured (via misnetting) at residential properties in Auckland, New Zealand, over the course of a 2-year supplementary feeding experiment.
DOI: 10.5061/dryad.75nn5/1
title: Numerical codes and experimental data for steady streaming around a cylinder pair

description: This zip file contains FreeFem++ codes to solve the steady Navier-Stokes equations subject to a prescribed slip velocity at the cylinder walls, obtained from an asymptotic expansion, and the experimental data in the form of photographs for the experiment with gap width ga=2.
DOI: 10.5061/dryad.7bm4d/1
title: Divergent migration data

description: These data are from one migratory and one resident subpopulation of Cape buffalo in the Okavango Delta, Botswana. For each subpopulation, there are data on the quality and physical characteristics of forage available in different seasons, the home range and herd sizes, body condition scores and demographic ratios.
DOI: 10.5061/dryad.7h554/1
title: Raw data hemocyte counts_Fors et al

description: This file contains raw data for hemocyte counts of infected G. pusilla and G. tenella larvae. The data from each experimental group (larvae from either northern or southern localities infected with parasitoids of different origin) of the two species are shown in separate excel sheets named accordingly. The tables include image file names, date for the parasitism experiments, identification data for each sample, geographic origin of the beetles, the raw hemocyte counts subdivided into hemocyte classes and the calculated percentages. On average 700 hemocytes from 9 images were counted per individual.
DOI: 10.5061/dryad.7v387/2
title: ReadMefile

description: This read me file describes the data file and supplementary file accompanying the above publication and contact for correspondence
DOI: 10.5061/dryad.7v387/3
title: 1) 2016-11-26 Data set of the trial

description: The submitted file include data from the Stop Caries Stockholm study. The database contains data on data caries, oral microorganisms and patient background factors
DOI: 10.5061/dryad.7v387/4
title: 2) 2016-11-26 List of the variables in the supplementary dataset used in the trial and explanation of the coding

description: List of the variables in the supplementary dataset used in the trial and explanation of the coding
DOI: 10.5061/dryad.8f901/1
title: RSBL-2016-0258 data for DRYAD

description: All data presented in this ms. Details are given in the "metadata" sheet in the Excel file.
DOI: 10.5061/dryad.8rf3j/1
title: Samnegard_Proc_R_Soc_B_2016_Bee_survey
DOI: 10.5061/dryad.8rf3j/2
title: Samnegard_Proc_R_Soc_B_2016_Rapeseed_data
DOI: 10.5061/dryad.8rf3j/3
title: Samnegard_Proc_R_Soc_B_2016_Landscape_local_variables
DOI: 10.5061/dryad.9kp7d/2
title: Supplemental Data Set 2

description: Multiple alignment of AP3/PI used for estimating time of diversification.
DOI: 10.5061/dryad.9kp7d/3
title: Supplemental Data Set 3

description: Multiple alignment of AG/STK used for estimating time of diversification.
DOI: 10.5061/dryad.9kp7d/4
title: Supplemental Data Set 4

description: Multiple alignment of SEP3/SEP1 used for estimating time of diversification.
DOI: 10.5061/dryad.9kp7d/5
title: Supplemental Data Set 5

description: List of accession numbers of APETALA3- and PISTILLATA-like proteins, AG- and STK-like proteins, and SEPALLATA-like proteins used for ancestral sequence reconstruction.
DOI: 10.5061/dryad.9kp7d/6
title: Supplemental Data Set 6

description: Multiple alignment of AP3/PI used for ancestral protein reconstruction.
DOI: 10.5061/dryad.9n34t/1
title: Assessment of the broader economic consequences of HPV prevention from a government-perspective: a fiscal analytic approach

description: A fiscal analytic model of HPV vaccination in Indonesia
DOI: 10.5061/dryad.b84nh/10
title: Radius JPEG Stack

description: Ulna JPEG stacks representing individual CT slices.
DOI: 10.5061/dryad.b84nh/7
title: Ulna MCS file

description: Ulna file that can be opened in using the mimics software. Can use to scroll through individual slices.
DOI: 10.5061/dryad.b84nh/8
title: Ulna Scanning Parameters

description: Scanning parameters for the ulna to be used in conjunction with CT reconstructive software.
DOI: 10.5061/dryad.b84nh/9
title: Ulna JPEG Stack

description: Ulna JPEG stacks representing individual CT slices.
DOI: 10.5061/dryad.d1k3b/1
title: Supplementary Data Sumner-Rooney et al.

description: Supplementary data files include all phylogenetic analyses (COI and combined gene trees), anatomical data (tomographic models of eight species) and full catalogue of specimens used in all aspects of this research.
DOI: 10.5061/dryad.fq684/1
title: Input and output files for rates analysis, organised by source study

description: Files include nucleotide alignments, newick format tree files, PAML control files, and PAML output files, organised by source study of the genetic/phylogenetic data and by gene. Nucleotide sequences were obtained from GenBank and aligned, or obtained from the source study authors directly (where noted in the Supplementary Material 2) but were further modified for analysis conducted in this study. Thus, the alignments do not necessarily reflect the original source study alignments.
DOI: 10.5061/dryad.fq988/1
title: Matos.et.al_data_1.1

description: The raw data used to evaluate the effect of landscape metrics on the phylogenetic diversity of the trees.
DOI: 10.5061/dryad.fq988/2
title: Matos.et.al_data_1.2

description: Worksheet used to run the GLM`s to the effects of landscape metrics on phylogenetic diversity of trees.
DOI: 10.5061/dryad.fq988/3
title: Matos.et.al_data_2.1

description: The raw data used to evaluate the effect of fragment size and habitat type on the phylogenetic diversity of the trees.
DOI: 10.5061/dryad.fq988/4
title: Matos.et.al_data_2.2

description: Worksheet used to run the GLMM`s on the effects of fragment size and habitat type on phylogenetic diversity of trees.
DOI: 10.5061/dryad.hb6m1/1
title: rawdata