cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12185661
title: Numerical solver from Flexural tensegrity of segmental beams. 31 January 2020 26 March 2020

description: Numerical solver implemented in MATLAB.
DOI: 10.6084/m9.figshare.12185661.v1
title: Numerical solver from Flexural tensegrity of segmental beams. 31 January 2020 26 March 2020

description: Numerical solver implemented in MATLAB.
DOI: 10.6084/m9.figshare.12185664.v1
title: 3D drawing of the segment. Super-linear case from Flexural tensegrity of segmental beams. 31 January 2020 26 March 2020

description: AutoCAD file used for the 3D printing of the prototype for the super-linear case.
DOI: 10.6084/m9.figshare.12185667.v1
title: 3D drawing of the segment. Linear case from Flexural tensegrity of segmental beams. 31 January 2020 26 March 2020

description: AutoCAD file used for the 3D printing of the prototype for the linear case.
DOI: 10.6084/m9.figshare.12185646
title: esm_ternary_python.zip from Competing ternary surface reaction CO + O<sub>2</sub> + H<sub>2</sub> on Ir(111). 24 October 2019 19 March 2020

description: Contains python scripts for numerical simulation. 'border.py' scans along the edges of the ternary diagram, 'X-filling.py' scans starting from X-border in both possible directions. 'zus.py' and 'zoom.py' are for data-processing after all data is collected. 'Route.py' scans along a predefined path within the ternary diagram with defined starting parameter.
DOI: 10.6084/m9.figshare.12185637
title: Dataset URL

description: Here is the data set used in the paper, the link is: http://sunai.uoc.edu/chalearn/
DOI: 10.6084/m9.figshare.12185646.v1
title: esm_ternary_python.zip from Competing ternary surface reaction CO + O<sub>2</sub> + H<sub>2</sub> on Ir(111). 24 October 2019 19 March 2020

description: Contains python scripts for numerical simulation. 'border.py' scans along the edges of the ternary diagram, 'X-filling.py' scans starting from X-border in both possible directions. 'zus.py' and 'zoom.py' are for data-processing after all data is collected. 'Route.py' scans along a predefined path within the ternary diagram with defined starting parameter.
DOI: 10.6084/m9.figshare.12185607
title: NGS data.xlsx

description: This datasheet is about bone metastasis of breast cancer<br>
DOI: 10.6084/m9.figshare.12185607.v1
title: NGS data.xlsx

description: This datasheet is about bone metastasis of breast cancer<br>
DOI: 10.6084/m9.figshare.12185547.v1
title: *Selvester agudo-pós - Analises .xlsx

description: This file is the full dataset from the manuscript: <i>The Selvester QRS score as myocardial fibrosis assessment in acute Chagas patients from the Brazilian Amazon.</i> <br><br>
DOI: 10.6084/m9.figshare.12185466
title: Processed data for phylogenetic analysis of ancient variola virus samples

description: ## variola-phylo.tar ##tarball containing processed data used for phylogenetic analyses of ancient variola virus samples<br>aln/multiple sequence alignment and raxml-ng files for high coverage and reference genomes<br>fa/consensus genomes for lower coverage ancient variola virus genomes<br>snps-tree/SNP tables for phylogenetically informative SNPs in lower coverage ancient variola virus genomes<br><br>best/XML files from BEAST analysis<br><br>## avarv.tar.gz ##tarball with data and python code for producing figures and gene loss analysis<br><br>
DOI: 10.6084/m9.figshare.12185235
title: Combining genotype, phenotype, and environmental data to delineate site-adjusted provenance strategies for ecological restoration

description: Genotype and sequence data for two plant species: <i>Mimosa acutistipula var. ferrea</i> (Fabaceae) and <i>Dioclea apurensis</i> (Fabaceae). For each species we provide geographic coordinates in decimal degrees, genotypes in Variant Call Format and sequences in FASTA format.<br>The data belongs to the following published preprint:<br>Carvalho CS, Forester BR, Mitre SK, Alves R, Imperatriz-Fonseca VL, Ramos SJ, Resende-Moreira LC, Siqueira JO, Trevelin LC, Caldeira CF, Gastauer M, Jaffé R. 2019. Combining genotype, phenotype, and environmental data to delineate site-adjusted provenance strategies for ecological restoration. bioRxiv:2019.12.11.872747. DOI: 10.1101/2019.12.11.872747.
DOI: 10.6084/m9.figshare.12185193
title: Data sets used and Supplementary Table 1

description: All raw data sets used for and Supplementary Table 1 from McKay <i>et al</i>. (2020) - ‘<i>Use of routinely collected data in a UK cohort of publicly funded randomised clinical trials</i>’.
DOI: 10.6084/m9.figshare.12185223
title: Wood properties database - chemical properties, mechanical properties and physical properties

description: Mean values of chemical, mechanical properties and physical propertiesSite: name of the studied site part of the 6 study sites representative of <i>Pinus nigra</i> in Portugal.Tree: Tree number in the study site.Diclor: extractives soluble in dichloromethane (%);Etan: extractives soluble in ethanol (%)H2O: extractives soluble in water (%)Total: total extractives (%)Klason: lignin content (%)H_G: lignin composition (%)cP_cH: pentose/hexose ratioMOR: radial modulus of rupture (MPa)MOE: radial modulus of elasticity (MPa)RD: average ring density (g cm-3)EWD: earlywood density (g cm-3)LWD: latewood density (g cm-3)LWP: latewood percentage (%)RW: ring width (mm)EWW: earlywood width (mm)LWW: latewood width (mm) HI: heterogeneity index<br>
DOI: 10.6084/m9.figshare.12185178
title: cap3_siwe.csv

description: Metadata for heterospecific pollen effects using <i>Sisyrinchium wettsteinii </i>as recipient
DOI: 10.6084/m9.figshare.12185193.v1
title: Data sets used and Supplementary Table 1

description: All raw data sets used for and Supplementary Table 1 from McKay <i>et al</i>. (2020) - ‘<i>Use of routinely collected data in a UK cohort of publicly funded randomised clinical trials</i>’.
DOI: 10.6084/m9.figshare.12185160
title: cap3_fure.csv

description: Metadata for heterospecific pollen effects using <i>Fuchsia regia</i><i> </i>as recipient
DOI: 10.6084/m9.figshare.12185178.v1
title: cap3_siwe.csv

description: Metadata for heterospecific pollen effects using <i>Sisyrinchium wettsteinii </i>as recipient
DOI: 10.6084/m9.figshare.12185085
title: Data set S2

description: Copy numbers of<i> bssA</i>, <i>bcrC </i>and 16S rRNA from AN and AB cultures.
DOI: 10.6084/m9.figshare.12185115
title: supplemental data for RT-qPCR

description: raw ct values and delta-delta calculation of results.
DOI: 10.6084/m9.figshare.12185145
title: cap3_fuca.csv

description: Metadata for heterospecific pollen effects using <i>Fuchsia campos-portoi</i><i> </i>as recipient
DOI: 10.6084/m9.figshare.12185160.v1
title: cap3_fure.csv

description: Metadata for heterospecific pollen effects using <i>Fuchsia regia</i><i> </i>as recipient
DOI: 10.6084/m9.figshare.12185085.v2
title: Data set S2

description: Copy numbers of<i> bssA</i>, <i>bcrC </i>and 16S rRNA from AN and AB cultures.
DOI: 10.6084/m9.figshare.12185085.v1
title: Data Set S2

description: Copy numbers of<i> bssA</i>, <i>bcrC </i>and 16S rRNA from AN and AB cultures.
DOI: 10.6084/m9.figshare.12184998
title: 2017_ArcilaHernandezetal_otu_table_nosingleton.csv

description: Microbial OTU table generated with 16S rRNA gene sequences from <i>Allomerus octoarticulatus </i>gasters (20 gasters per colony). Sequencing was done in a 454FLX, Roche, USA Instrument.
DOI: 10.6084/m9.figshare.12184998.v1
title: 2017_ArcilaHernandezetal_otu_table_nosingleton.csv

description: Microbial OTU table generated with 16S rRNA gene sequences from <i>Allomerus octoarticulatus </i>gasters (20 gasters per colony). Sequencing was done in a 454FLX, Roche, USA Instrument.
DOI: 10.6084/m9.figshare.12184902
title: Prevalence of gastrointestinal nematodes, parasitic control practices and anthelmintic resistance patterns in a working horse population in Egypt

description: Results of parasitological examination of 644 working horses from Egypt and faecal egg reduction testing performed following treatment with ivermectin, doramectin and fenbendazole
DOI: 10.6084/m9.figshare.12184902.v1
title: Prevalence of gastrointestinal nematodes, parasitic control practices and anthelmintic resistance patterns in a working horse population in Egypt

description: Results of parasitological examination of 644 working horses from Egypt and faecal egg reduction testing performed following treatment with ivermectin, doramectin and fenbendazole
DOI: 10.6084/m9.figshare.12184860
title: A validation scale to determine the readiness of environmental DNA assays for routine species monitoring

description: This data set contains the data files and the R-code accompanying the titled manuscript.<br><br>"1_literature database.xlsx" contains citations and basic information on the 327 papers used in the meta-analysis.<br><br>"2_validation scale checklist.xlsx" contains the validation scores extracted for 546 targeted environmental DNA assays contained in the literature database and a separate spreadsheet with variable definitions.<br><br>"3_validation_scale_R_script.R" and "4_HTML file R script validation scale.html" contain the R script which is the basis for all calculations and figures included in the manuscript.<br>"5_valscale_basic", "6_checklist_metrics_1.csv", "7_val_var_summary.csv", "8_baseforbubbleplot.csv", "9_checklist_metrics_2.csv", "10_forbox1.csv", and "11_forbox2.csv" contain subsets or transformations of the data contained in "validation scale checklist.xlsx" and are accessed by the R-script, which also contains content descriptions of these files.<br>
DOI: 10.6084/m9.figshare.12184848
title: Other People’s Gaze Encoded as Implied Motion in the Human Brain

description: Associated study: Arvid Guterstam, Andrew I. Wilterson, Davis Wachtell, Michael S. A. Graziano (2020). Other People’s Gaze Encoded as Implied Motion in the Human Brain. PNAS.<br>The zip file contains the following fMRI files:1. average_t1_32subjs.nii - Average structural (t1) scan across the 32 subjects.2. EyesOpenVsEyesCovered_0p001_masked_incl_with_EyesOpenVsChance_0p05.nii - Group-level results for the main decoding analysis (Fig 2, Fig S3, and Table 1).3. MT_localizer_MovingDots_vs_StaticDots_0p05_FWE_corr.nii - Group-level results for the MT+ Localizer. Contrast: MovingDots &gt; StaticDots (Fig S2 and Table S1)4. ROI_Left_MTPlus.nii - Left MT+ ROI derived from functional localizer.5. ROI_Right_MTPlus.nii - Right MT+ ROI derived from functional localizer.
DOI: 10.6084/m9.figshare.12184788
title: COVID19

description: model prediction of covid19
DOI: 10.6084/m9.figshare.12184788.v1
title: COVID19

description: model prediction of covid19
DOI: 10.6084/m9.figshare.12182025
title: Dataset feeding tube incidents

description: Hospitalised patients with nasogastric/nasoenteric tube (NGT/NET) are at constant risk of incidents; therefore, healthcare professionals need to routinely monitor risks and adopt strategies for patient safety and quality of care. This study aimed to evaluate the NGT/NET-related incidents in hospitalised patients and associated factors.
DOI: 10.6084/m9.figshare.12181986
title: sphinx_008.tar.gz

description: 8/33 CAPTCHA dataset.
DOI: 10.6084/m9.figshare.12181986.v1
title: sphinx_008.tar.gz

description: 8/33 CAPTCHA dataset.
DOI: 10.6084/m9.figshare.12182025.v1
title: Dataset feeding tube incidents

description: Hospitalised patients with nasogastric/nasoenteric tube (NGT/NET) are at constant risk of incidents; therefore, healthcare professionals need to routinely monitor risks and adopt strategies for patient safety and quality of care. This study aimed to evaluate the NGT/NET-related incidents in hospitalised patients and associated factors.
DOI: 10.6084/m9.figshare.12181947
title: sphinx_007.tar.gz

description: 7/33 CAPTCHA data.
DOI: 10.6084/m9.figshare.12181950
title: Effect of antibiotic withdrawal in feed on chicken gut microbial dynamics, immunity, growth performance and prevalence of foodborne pathogens.

description: Development of antibiotic resistance in foodborne pathogens, <em>Salmonella</em> spp. and <em>Campylobacter</em>, is a public health concern. Public demand to reduce the use of sub-therapeutic antibiotic growth promoters (AGP) in poultry feeding has resulted in greater adoption of antibiotic-free poultry production systems. There is a need to understand the effects of AGP removal from poultry feed on gut microbiota and its impact on prevalence of foodborne pathogens. The effect of antibiotic withdrawal from poultry feed on gut microbial community, host performance and immunity, and prevalence of <em>Salmonella</em> and <em>Campylobacter</em> was evaluated. Birds were raised on three phase diets (starter [d0-22], grower [d23-35] and finisher [d36-42]) with and without bacitracin dimethyl salicyclate (BMD). At early growth stage, bird performance was improved (P ≤ 0.05) with BMD treatment, whereas performance was better (P ≤ 0.05) in control group (no BMD in the feed) at the time of commercial processing. Acetate and butyrate production was affected (P ≤ 0.05) by age, whereas propionate production was affected (P ≤ 0.05) by both the treatment and age. The bacterial communities in the cecum were more diverse (P ≤ 0.001) and rich compared to the ileal communities, and they shifted in parallel to one another as the chicks matured. Differences in diversity and species richness were not observed (P &gt; 0.05) between the BMD-fed and control groups. Comparing all ages, treatments and diets, the composition of cecal and ileal bacterial communities was different (P ≤ 0.001). Inclusion of BMD in the feed did not affect the bacterial phyla. However, predictable shift in the ileal and cecal bacterial population at lower taxonomic level was observed in control vs BMD-fed group. Cytokines gene expression (IL-10, IL-4, IFN-γ, beta-defensin, and TLR-4) was affected (P≤ 0.05) in the BMD-fed group at early stages of growth. The prevalence of foodborne pathogens, <em>Campylobacter</em> spp. and <em>Salmonella</em> spp. showed higher abundance in the ilea of BMD-fed chicks compared to control group. Overall, this study provided insight of the impact of AGP supplementation in the feed on gut microbial modulations, bird performance, host immunity and pathogen prevalence. This information can assist in designing alternative strategies to replace antibiotics in modern poultry production and for food safety.
DOI: 10.6084/m9.figshare.12181953
title: Somatic embryos of Typha domingensis transformed with Agrobacterium rhizogenes

description: An induction of transformed roots in somatic embryos of<i> Typha domingensis</i> was evaluated with wild <i>Agrobacterium rhizogenes</i>. Rhizogenesis was induced through the genetic transformation of a line of somatic embryos (YC1) in the oblong and scutellar states of development using the K599, LBA9402 and A4 strains of <i>A. rhizogenes</i>.
DOI: 10.6084/m9.figshare.12181953.v1
title: Somatic embryos of Typha domingensis transformed with Agrobacterium rhizogenes

description: An induction of transformed roots in somatic embryos of<i> Typha domingensis</i> was evaluated with wild <i>Agrobacterium rhizogenes</i>. Rhizogenesis was induced through the genetic transformation of a line of somatic embryos (YC1) in the oblong and scutellar states of development using the K599, LBA9402 and A4 strains of <i>A. rhizogenes</i>.
DOI: 10.6084/m9.figshare.12181947.v1
title: sphinx_007.tar.gz

description: 7/33 CAPTCHA data.
DOI: 10.6084/m9.figshare.12181950.v1
title: Effect of antibiotic withdrawal in feed on chicken gut microbial dynamics, immunity, growth performance and prevalence of foodborne pathogens.

description: Development of antibiotic resistance in foodborne pathogens, <em>Salmonella</em> spp. and <em>Campylobacter</em>, is a public health concern. Public demand to reduce the use of sub-therapeutic antibiotic growth promoters (AGP) in poultry feeding has resulted in greater adoption of antibiotic-free poultry production systems. There is a need to understand the effects of AGP removal from poultry feed on gut microbiota and its impact on prevalence of foodborne pathogens. The effect of antibiotic withdrawal from poultry feed on gut microbial community, host performance and immunity, and prevalence of <em>Salmonella</em> and <em>Campylobacter</em> was evaluated. Birds were raised on three phase diets (starter [d0-22], grower [d23-35] and finisher [d36-42]) with and without bacitracin dimethyl salicyclate (BMD). At early growth stage, bird performance was improved (P ≤ 0.05) with BMD treatment, whereas performance was better (P ≤ 0.05) in control group (no BMD in the feed) at the time of commercial processing. Acetate and butyrate production was affected (P ≤ 0.05) by age, whereas propionate production was affected (P ≤ 0.05) by both the treatment and age. The bacterial communities in the cecum were more diverse (P ≤ 0.001) and rich compared to the ileal communities, and they shifted in parallel to one another as the chicks matured. Differences in diversity and species richness were not observed (P &gt; 0.05) between the BMD-fed and control groups. Comparing all ages, treatments and diets, the composition of cecal and ileal bacterial communities was different (P ≤ 0.001). Inclusion of BMD in the feed did not affect the bacterial phyla. However, predictable shift in the ileal and cecal bacterial population at lower taxonomic level was observed in control vs BMD-fed group. Cytokines gene expression (IL-10, IL-4, IFN-γ, beta-defensin, and TLR-4) was affected (P≤ 0.05) in the BMD-fed group at early stages of growth. The prevalence of foodborne pathogens, <em>Campylobacter</em> spp. and <em>Salmonella</em> spp. showed higher abundance in the ilea of BMD-fed chicks compared to control group. Overall, this study provided insight of the impact of AGP supplementation in the feed on gut microbial modulations, bird performance, host immunity and pathogen prevalence. This information can assist in designing alternative strategies to replace antibiotics in modern poultry production and for food safety.
DOI: 10.6084/m9.figshare.12181158
title: Metadata record for: A data set of sea surface stereo images to resolve space-time wave fields

description: This dataset contains key characteristics about the data described in the Data Descriptor A data set of sea surface stereo images to resolve space-time wave fields. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12181158.v1
title: Metadata record for: A data set of sea surface stereo images to resolve space-time wave fields

description: This dataset contains key characteristics about the data described in the Data Descriptor A data set of sea surface stereo images to resolve space-time wave fields. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12180513
title: Supplementary Material for: A Prospective Pilot Study of Graft-versus-Host Disease Prophylaxis with Post-Transplantation Cyclophosphamide and Ruxolitinib in Patients with Myelofibrosis

description: <b><i>Introduction:</i></b> This prospective study evaluated a calcineurin inhibitor-free graft-versus-host disease (GVHD) prophylaxis regimen of ruxolitinib in combination with post-transplant cyclophosphamide (PTCy). <b><i>Patents and Methods:</i></b> Twenty patients with primary or secondary myelofibrosis were prospectively enrolled. Reduced intensity conditioning was performed, followed by allogeneic stem cell transplantation from related (<i>n</i> = 7) or unrelated (<i>n</i> = 13) donors. GVHD prophylaxis included only PTCy and ruxolitinib (45 mg) from day–7 to day–2, and 15 mg from day+5 to day+100. This trial was registered at www.clinicaltrials.gov as #NCT02806375. <b><i>Results:</i></b> Primary engraftment was documented in 17 patients. One patient experienced primary graft failure and 2 died before engraftment. Eleven patients demonstrated severe poor graft function (SPGF), which required ruxolitinib dose reduction. The regimen was well tolerated, with grade 3–4 non-haematological toxicity in 30%, viral reactivation in 45%, and severe sepsis in 15% of patients. The incidence of acute GVHD grade II–IV was 25%, grade III-IV GVHD was 15%, and moderate chronic GVHD was 20%, with no severe cases. Only 2 patients required systemic steroids. Haematological relapse was documented in 1 patient. Two-year non-relapse mortality was 15%, 2-year overall survival was 85%, and 2-year event-free survival was 72%. <b><i>Conclusion:</i></b> GVHD prophylaxis with PTCy and ruxolitinib is associated with low toxicity, good acute and chronic GVHD control, and low relapse incidence. However, the relatively high rate of SPGF should be taken into account. SPGF could possibly be mitigated by ruxolitinib dose reduction.
DOI: 10.6084/m9.figshare.12180513.v1
title: Supplementary Material for: A Prospective Pilot Study of Graft-versus-Host Disease Prophylaxis with Post-Transplantation Cyclophosphamide and Ruxolitinib in Patients with Myelofibrosis

description: <b><i>Introduction:</i></b> This prospective study evaluated a calcineurin inhibitor-free graft-versus-host disease (GVHD) prophylaxis regimen of ruxolitinib in combination with post-transplant cyclophosphamide (PTCy). <b><i>Patents and Methods:</i></b> Twenty patients with primary or secondary myelofibrosis were prospectively enrolled. Reduced intensity conditioning was performed, followed by allogeneic stem cell transplantation from related (<i>n</i> = 7) or unrelated (<i>n</i> = 13) donors. GVHD prophylaxis included only PTCy and ruxolitinib (45 mg) from day–7 to day–2, and 15 mg from day+5 to day+100. This trial was registered at www.clinicaltrials.gov as #NCT02806375. <b><i>Results:</i></b> Primary engraftment was documented in 17 patients. One patient experienced primary graft failure and 2 died before engraftment. Eleven patients demonstrated severe poor graft function (SPGF), which required ruxolitinib dose reduction. The regimen was well tolerated, with grade 3–4 non-haematological toxicity in 30%, viral reactivation in 45%, and severe sepsis in 15% of patients. The incidence of acute GVHD grade II–IV was 25%, grade III-IV GVHD was 15%, and moderate chronic GVHD was 20%, with no severe cases. Only 2 patients required systemic steroids. Haematological relapse was documented in 1 patient. Two-year non-relapse mortality was 15%, 2-year overall survival was 85%, and 2-year event-free survival was 72%. <b><i>Conclusion:</i></b> GVHD prophylaxis with PTCy and ruxolitinib is associated with low toxicity, good acute and chronic GVHD control, and low relapse incidence. However, the relatively high rate of SPGF should be taken into account. SPGF could possibly be mitigated by ruxolitinib dose reduction.
DOI: 10.6084/m9.figshare.12180144
title: Questionario de Avaliacao de IDE

description: Questionário divulgado para obter o nível de desenvolvimento de IDEs em municípios brasileiros.<br>
DOI: 10.6084/m9.figshare.12180144.v2
title: Questionario de Avaliacao de IDE

description: Questionário divulgado para obter o nível de desenvolvimento de IDEs em municípios brasileiros.<br>
DOI: 10.6084/m9.figshare.12180015
title: mc_006.tar.gz

description: 6/10 CAPTCHA data
DOI: 10.6084/m9.figshare.12180144.v1
title: Questionario de Avaliacao de IDE

description: Questionário divulgado para obter o nível de desenvolvimento de IDEs em municípios brasileiros.<br>
DOI: 10.6084/m9.figshare.12180015.v1
title: mc_006.tar.gz

description: 6/10 CAPTCHA data