cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22820804.v1
title: Supplementary Material for: Intrauterine Blood Transfusion for Parvo B19 Induced Fetal Anemia: Neuroimaging Findings and Long-Term Neurological Outcomes

description: INTRODUCTION: We aimed to evaluate neuroimaging findings and long-term neurodevelopment of fetuses and children following intrauterine blood transfusion [IUT] for parvo B19 infection induced anemia compared to those with RBC alloimmunization. METHODS: We conducted a retrospective cohort study including women who underwent an IUT due to fetal anemia between 2006 to 2019 in a tertiary, university-affiliated medical center. The cohort was divided into two: a study group - fetuses affected by congenital parvo-B19 infection; and a control group - fetuses affected by RBC alloimmunization. Retrospective data such as antenatal sonographic evaluations, fetal brain MRI results and short-term fetal and neonatal outcomes were collected. All children underwent a neurodevelopmental evaluation after birth using a Vineland questionnaire. Primary outcome was defined as the presence or absence of neurodevelopmental delay. Secondary outcome was defined as the presence of abnormal fetal neuroimaging findings such as cerebellar hypoplasia, polymicrogyria, intracranial hemorrhage or severe ventriculomegaly. RESULTS: Overall, 71 fetuses requiring at least one IUT were included in the study. Of these, 18 were affected by parvo B19 infection and 53 by RBC alloimmunization with various associated antibodies. Fetuses in the parvo B19 group presented at an earlier gestational age [22.91 ± 3.36 weeks vs. 27.37 ± 4.67 weeks, p=0.002] and were more affected by hydrops [93.33% vs. 16.98%, p&lt;0.001]. Three fetuses out of the 18[16.67%] fetuses in the parvo B19 group died in utero following the IUT. Abnormal neuro-imaging findings were detected in 4/15 [26.7%] of the parvo B19 survivors vs. 2/ 53 [3.8%] of fetuses affected by RBC alloimmunization [p=0.005]. There was no difference in long-term neurodevelopmental delay rates between the children in the study and control groups, as assessed at the average age of 3.65 and 6.53 years, accordingly. CONCLUSION: Fetal anemia due to parvo B19, treated with IUT, might be associated with increased rates of abnormal neuro-sonographic findings. The correlation between those findings and long-term adverse neuro-developmental outcomes requires further investigation
DOI: 10.6084/m9.figshare.22820585.v1
title: Supplementary Material for: Soluble CD14 and osteoprotegerin associate with ankle-brachial index as a measure of arterial stiffness in patients with mild to moderate chronic kidney disease in a five-year prospective study.

description: Introduction Vascular lesions and arterial stiffness appear at early stages of chronic kidney disease (CKD) and follow an accelerated course with disease progression, contributing to high cardiovascular mortality. There are limited prospective data on mechanisms contributing to progression of arterial stiffness in mild to moderate CKD (stages 2-3). Methods We applied an affinity proteomics approach to identify candidates of circulating biomarkers with potential impact on vascular lesions in CKD and selected soluble cluster of differentiation 14 (sCD14), angiogenin (ANG) and osteoprotegerin (OPG) for further analysis. We studied their association with Ankle-brachial index (ABI) and carotid intima–media thickness (CIMT), as measures of arteriosclerosis and atherosclerosis respectively, in 48 patients with CKD stages 2-3, who were prospectively followed and intensively treated for five years, and 44 healthy controls. Results Concentrations of both sCD14 (p&lt;0.001), ANG (p&lt;0.001) and OPG (p&lt;0.05) were higher in patients with CKD 2-3 at baseline, and sCD14 (p&lt;0.001) and ANG (p&lt;0.001) remained elevated in CKD patients at follow-up. There were positive correlations between ABI and sCD14 levels (r=0.36, p=0.01) and between ABI and OPG (r=0.31, p=0.03) at five years. The changes in sCD14 during follow-up correlated to changes in ABI from baseline to five years (r=0.41, p=0.004). Conclusion Elevated levels of circulating sCD14 and OPG in patients with CKD 2-3 were significantly associated with ABI, a measure of arterial stiffness. An increase in sCD14 over time in CKD 2-3 patients was associated with a corresponding increase in ABI. Further studies are needed to examine if early intensive multifactorial medication to align with international treatment targets may influence cardiovascular outcomes.
DOI: 10.6084/m9.figshare.22820579.v1
title: Supplementary Material for: New Miniaturized System for Ultrafiltration: Rationale and Design of a Single-Center, Crossover, Randomized, Open-Label, Pilot Study Protocol

description: Introduction: Fluid overload and congestion are common features in patients with heart failure and are associated with negative clinical outcomes. Therapies for these conditions are diuretic-centered but frequently failure to achieve patient adequate hydration status, prompting the use of extracorporeal ultrafiltration. Artificial Diuresis 1, AD1, is a miniaturized, portable, and wearable system designed to deliver isolated ultrafiltration with the finest degree of simplicity and practicality. Methods/Design: Single-center, crossover, randomized, open-label pilot study to investigate the safety and the efficacy (concerning ultrafiltration accuracy) of extracorporeal ultrafiltration with the device AD1 in comparison to isolated ultrafiltration with a traditional machine (PrisMaX. Patients with chronic kidney disease stage 5D (on hemodialysis) or intensive care patients presenting acute kidney injury stage 3D (requiring hemodialysis) will carry out a single session of isolated ultrafiltration with each of the machines. The safety primary outcomes will be the occurrence of adverse events. The efficacy primary outcome will be the accuracy of ultrafiltration rate (delivered/prescribed) on each of the devices. Discussion/Conclusion: AD1 is a novel miniaturized device for extracorporeal ultrafiltration. This study will be the first-in-human use of AD1 in patients with fluid overload. Trial registration number: CESC Provincia di Vicenza_6.9.22(n.54/22)_1575_29.9.22
DOI: 10.6084/m9.figshare.22820069
title: metagenomic assmbly genome

description: metagenomic assmbly genome
DOI: 10.23670/ecnms.2023.1.1.1
title: Динамика прироста отгрузок добывающих и перерабатывающих производств

description: Cifra. Экономика, Выпуск 1 (1) 2023
DOI: 10.23670/ecnms.2023.1.3.1
title: Ответы на вопрос 1: Ваш пол

description: Cifra. Экономика, Выпуск 1 (1) 2023
DOI: 10.23670/ecnms.2023.1.5.1
title: Объем инвестиций на реализацию проектов по улучшению транспортной инфраструктуры стран Каспийского бассейна до 2025 года

description: Cifra. Экономика, Выпуск 1 (1) 2023
DOI: 10.23670/ecnms.2023.1.1.2
title: Индексы производства в добывающих и перерабатывающих отраслях

description: Cifra. Экономика, Выпуск 1 (1) 2023
DOI: 10.23670/ecnms.2023.1.3.2
title: Ответы на вопрос 2: Ваш возраст

description: Cifra. Экономика, Выпуск 1 (1) 2023
DOI: 10.23670/ecnms.2023.1.1.3
title: Динамика количества предприятий и организаций по формам собственности

description: Cifra. Экономика, Выпуск 1 (1) 2023
DOI: 10.23670/ecnms.2023.1.3.3
title: Ответы на вопрос 3: Ваше образование

description: Cifra. Экономика, Выпуск 1 (1) 2023
DOI: 10.23670/ecnms.2023.1.3.4
title: Ответы на вопрос 4: Ваш трудовой стаж в сфере туризма

description: Cifra. Экономика, Выпуск 1 (1) 2023
DOI: 10.23670/ecnms.2023.1.3.5
title: Ответы на вопрос 5: Какова ваша должность в иерархии туристического предприятия

description: Cifra. Экономика, Выпуск 1 (1) 2023
DOI: 10.5517/ccdc.csd.cc274k54
title: CCDC 2059955: Experimental Crystal Structure Determination

description: Related Article: Chaiyon Chaiwai, Wipaporn Kitisriworaphan, Sujinda Petdee, Phattananawee Nalaoh, Thanyarat Chawanpunyawat, Pongsakorn Chasing, Thanaporn Manyum, Taweesak Sudyoadsuk, Vinich Promarak|2023|Dyes Pigm.|216|111311|doi:10.1016/j.dyepig.2023.111311
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2766nb
title: CCDC 2061551: Experimental Crystal Structure Determination

description: Related Article: Chaiyon Chaiwai, Wipaporn Kitisriworaphan, Sujinda Petdee, Phattananawee Nalaoh, Thanyarat Chawanpunyawat, Pongsakorn Chasing, Thanaporn Manyum, Taweesak Sudyoadsuk, Vinich Promarak|2023|Dyes Pigm.|216|111311|doi:10.1016/j.dyepig.2023.111311
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28my2y
title: CCDC 2104530: Experimental Crystal Structure Determination

description: Related Article: Matthew D. Wodrich, Miyeon Chang, Simone Gallarati, Łukasz Woźniak, Nicolai Cramer, Clemence Corminboeuf|2022|Chem.-Eur.J.|28|e202200399|doi:10.1002/chem.202200399
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29b7jf
title: CCDC 2125004: Experimental Crystal Structure Determination

description: Related Article: Jun Harada, Haruka Takahashi, Rin Notsuka, Mika Takehisa, Yukihiro Takahashi, Tomoyasu Usui, Hiroki Taniguchi|2023|Angew.Chem.,Int.Ed.|62|e202215286|doi:10.1002/anie.202215286
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29bvq7
title: CCDC 2125599: Experimental Crystal Structure Determination

description: Related Article: Agnideep Das, Jules Schleinitz, Lydia Karmazin, Bruno Vincent, Nolwenn Le Breton, Guillaume Rogez, Aurélie Guenet, Sylvie Choua, Laurence Grimaud, Marine Desage-El Murr|2022|Chem.-Eur.J.|28|e202200596|doi:10.1002/chem.202200596
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29g4c9
title: CCDC 2128750: Experimental Crystal Structure Determination

description: Related Article: Kejiang Liang, Hao Chen, Xue Wang, Tian Lu, Zhiming Duan, Jonathan L. Sessler, Chuanhu Lei|2023|Angew.Chem.,Int.Ed.|62|e202212770|doi:10.1002/anie.202212770
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29g4fc
title: CCDC 2128752: Experimental Crystal Structure Determination

description: Related Article: Kejiang Liang, Hao Chen, Xue Wang, Tian Lu, Zhiming Duan, Jonathan L. Sessler, Chuanhu Lei|2023|Angew.Chem.,Int.Ed.|62|e202212770|doi:10.1002/anie.202212770
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.19813568
title: Environmental inferences based on the dietary ecology of camelids from west-central Mexico during the Late Pleistocene

description: Fossil camelids (Artiodactyla, Camelidae) record for Mexican Late Pleistocene is constituted by <i>Camelops hesternus, Hemiauchenia macrocephala, Hemiauchenia gracilis</i>, and <i>Palaeolama mirifica</i>. It analysed dental microwear and carbon and oxygen stable isotopes in teeth enamel of <i>C. hesternus, H. macrocephala</i> and <i>H. gracilis</i> from two fossil sites (LC-PT, and LP-SA) in west-central Mexico, gaining knowledge about camelids palaeoecology (diet and habitat). Microwear and δ<sup>13</sup>C values indicate that <i>C. hesternus</i> from both sites had a browser diet with a preference for C<sub>3</sub>-C<sub>4</sub> plants, while <i>H. macrocephala</i> from LC-PT was browser with a predilection for C<sub>3</sub> plants, and <i>H. gracilis</i> from LC-PT had a mixed feeder diet with a preference for C<sub>3</sub> plants. The δ<sup>18</sup>O and the aridity index show that camelids in central Mexico were evaporation-sensitive taxa. The results suggest that LC-PT had a heterogeneous environment composed of open areas and closed zones, temperatures between 13.95°C and 19.9°C and extreme seasonal changes. The environment in LP-SA was dominated by open areas, with small closed vegetation patches, a temperature of 16.29°C, and less seasonal variation. The aridity index indicates relatively drier conditions at LP-SA than at LC-PT. Camelid dietary ecology provides an initial reconstruction of a regional paleoenvironment, with diverse ecosystems present.
DOI: 10.6084/m9.figshare.19813568.v1
title: Environmental inferences based on the dietary ecology of camelids from west-central Mexico during the Late Pleistocene

description: Fossil camelids (Artiodactyla, Camelidae) record for Mexican Late Pleistocene is constituted by <i>Camelops hesternus, Hemiauchenia macrocephala, Hemiauchenia gracilis</i>, and <i>Palaeolama mirifica</i>. It analysed dental microwear and carbon and oxygen stable isotopes in teeth enamel of <i>C. hesternus, H. macrocephala</i> and <i>H. gracilis</i> from two fossil sites (LC-PT, and LP-SA) in west-central Mexico, gaining knowledge about camelids palaeoecology (diet and habitat). Microwear and δ<sup>13</sup>C values indicate that <i>C. hesternus</i> from both sites had a browser diet with a preference for C<sub>3</sub>-C<sub>4</sub> plants, while <i>H. macrocephala</i> from LC-PT was browser with a predilection for C<sub>3</sub> plants, and <i>H. gracilis</i> from LC-PT had a mixed feeder diet with a preference for C<sub>3</sub> plants. The δ<sup>18</sup>O and the aridity index show that camelids in central Mexico were evaporation-sensitive taxa. The results suggest that LC-PT had a heterogeneous environment composed of open areas and closed zones, temperatures between 13.95°C and 19.9°C and extreme seasonal changes. The environment in LP-SA was dominated by open areas, with small closed vegetation patches, a temperature of 16.29°C, and less seasonal variation. The aridity index indicates relatively drier conditions at LP-SA than at LC-PT. Camelid dietary ecology provides an initial reconstruction of a regional paleoenvironment, with diverse ecosystems present.
DOI: 10.6084/m9.figshare.19783612
title: New contributions to the skull anatomy of spinosaurid theropods: Baryonychinae maxilla from the Early Cretaceous of Igea (La Rioja, Spain)

description: Spinosaurid dinosaurs show a wide geographical and temporal distribution, being present in Gondwanan and Laurasian landmasses, at least, during the Lower Cretaceous and the Cenomanian. European spinosaurids are more diverse than previously thought with five, and probably six, currently recognised genera. The revision of CPI 477, a fragment of a left maxilla from the Lower Cretaceous of La Rioja (Spain) previously assigned to <i>Baryonyx</i>, demonstrates that this specimen cannot be referred to this genus and likely belongs to an indeterminate baryonychine closer to <i>Baryonyx</i> than to <i>Suchomimus</i>. CPI 477 exhibits a tooth replacement process comparable to that of other theropods and, besides, similar to other large theropods, two replacement teeth could simultaneously be developed in the same alveolus, partly explaining high replacement ratios and the overabundance of spinosaurid teeth in some fossil sites. Furthermore, the <i>Oxalaia</i> maxilla shares the anteriorly located external naris with <i>Irritator</i> and baryonychine spinosaurids, which differ from the more retracted ones in African spinosaurines. Finally, in addition to the previously noticed differences between Baryonychinae and Spinosaurinae, the paradental groove of African spinosaurines and <i>Oxalaia</i> differs from that of baryonychines in being sinusoidal instead of straight.
DOI: 10.5281/zenodo.7936957
title: The imbalance of wanting and liking contribute to a bias of internal attention towards positive consequences of tobacco smoking

description: Data set used for the publication entitled "<strong>The imbalance of wanting and liking contribute to a bias of internal attention towards positive consequences of tobacco smoking</strong>". Variable names: sex: gender of respondent; classes: smoker profile; attempt: quit attempt in the past 12 months; imoportance: importance attributed to quit smoking; plan: whether they plan to quit smoking; prob1-prob3: how likely they will not smoke (1) within a year, (2) within 5 years, (3) within 10 years; time: when they plan to quit; nicotine_dependence: Fagerstöm score; smoking_freq: frequency of smoking; smokng_quantity: number of cigarettes on a day they smoke; wb: wanting-before; wd: wanting-during; wa: wanting-after; lb:liking-before; ld: liking-during; la: liking-after; ist-before: wd minus ld; ist_during: wd-ld; ist_after: wa-la; i1-14: importance scores of smoking consequences; regret: regret about start smoking; ease: assumed difficulity of quitting; environment: amont of smokers around; people: how much smoking bothers others around. For more info please email domonkos.file@gmail.com
DOI: 10.5281/zenodo.7936954
title: The imbalance of wanting and liking contribute to a bias of internal attention towards positive consequences of tobacco smoking

description: Data set used for the publication entitled "<strong>The imbalance of wanting and liking contribute to a bias of internal attention towards positive consequences of tobacco smoking</strong>". Variable names: sex: gender of respondent; classes: smoker profile; attempt: quit attempt in the past 12 months; imoportance: importance attributed to quit smoking; plan: whether they plan to quit smoking; prob1-prob3: how likely they will not smoke (1) within a year, (2) within 5 years, (3) within 10 years; time: when they plan to quit; nicotine_dependence: Fagerstöm score; smoking_freq: frequency of smoking; smokng_quantity: number of cigarettes on a day they smoke; wb: wanting-before; wd: wanting-during; wa: wanting-after; lb:liking-before; ld: liking-during; la: liking-after; ist-before: wd minus ld; ist_during: wd-ld; ist_after: wa-la; i1-14: importance scores of smoking consequences; regret: regret about start smoking; ease: assumed difficulity of quitting; environment: amont of smokers around; people: how much smoking bothers others around. For more info please email domonkos.file@gmail.com
DOI: 10.6084/m9.figshare.22587823
title: Emergence of biased hypermutation in a heterologous additional transcription unit in recombinant lentogenic Newcastle disease virus

description: For NGS, recombinant NDV strains were grown to early cytopathic effects in Vero E6 cells. Supernatants were harvested, treated with benzonase (Sigma) and MgCl2 (Applied Biosystems) and stored in Trizol-LS (Invitrogen). RNA was isolated using Direct-zol RNA Microprep (Zymo Research). cDNA was prepared using random primers, and sequencing was performed on an Illumina MiSeq. We performed reference-based assembly using BBTools Suite (v.39.01: https://jgi.doe.gov/data-and-tools/software-tools/bbtools/). After trimming of artefacts, adapters and homopolymers reads were mapped against the reference sequence followed by variant calling and generation of a consensus sequence. This consensus was subsequently used to map the trimmed reads, and Freebayes (V0.9.21: https://github.com/freebayes/freebayes) was used to generate a variant calling file, using a threshold setting of 5%. Sequence results were analyzed using Integrative Genomics Viewer (IGV - https://igv.org/). Raw NGS sequence reads, bam/bai files and consensus sequences are available from the NCBI SRA database: BioProject accession number PRJNA936109. The files in this repository are the VCF reports that belong to these sequences.
DOI: 10.6084/m9.figshare.22587823.v1
title: Emergence of biased hypermutation in a heterologous additional transcription unit in recombinant lentogenic Newcastle disease virus

description: Supplementary material and data for "Emergence of biased hypermutation in a heterologous additional transcription unit in recombinant lentogenic Newcastle disease virus", as published in the Journal of General Virology. <br> Supplementary material S1 The complete cDNA sequences of the ATUs in the rNDVs used in this study, including start/end boxes and untranslated regions can be found in the file titled "JGV-D-23-00049 Supplementary data 1.pdf." <br> Supplementary material S2 For NGS, recombinant NDV strains were grown to early cytopathic effects in Vero E6 cells. Supernatants were harvested, treated with benzonase (Sigma) and MgCl2 (Applied Biosystems) and stored in Trizol-LS (Invitrogen). RNA was isolated using Direct-zol RNA Microprep (Zymo Research). cDNA was prepared using random primers, and sequencing was performed on an Illumina MiSeq. We performed reference-based assembly using BBTools Suite (v.39.01: https://jgi.doe.gov/data-and-tools/software-tools/bbtools/). After trimming of artefacts, adapters and homopolymers reads were mapped against the reference sequence followed by variant calling and generation of a consensus sequence. This consensus was subsequently used to map the trimmed reads, and Freebayes (V0.9.21: https://github.com/freebayes/freebayes) was used to generate a variant calling file, using a threshold setting of 5%. Sequence results were analyzed using Integrative Genomics Viewer (IGV - https://igv.org/). Raw NGS sequence reads, bam/bai files and consensus sequences are available from the NCBI SRA database: BioProject accession number PRJNA936109. The .vcf files in this repository are the VCF reports that belong to these sequences.
DOI: 10.6084/m9.figshare.22820897
title: The specific data used from TCGA.zip

description: The zip file is the data downloaded from TCGA, which was used in manuscript submitted to PeerJ.
DOI: 10.6084/m9.figshare.22820897.v2
title: The specific data used from TCGA.zip

description: The zip file is the data downloaded from TCGA, which was used in manuscript submitted to PeerJ.
DOI: 10.6084/m9.figshare.22820897.v1
title: The specific data used from TCGA.zip

description: The zip file is the data downloaded from TCGA, which was used in manuscript submitted to PeerJ.