cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6fuhg7
title: Occurrence Download

description: A dataset containing 848506 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 countrycode countrycode,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, countrycode, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, countrycode, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, countrycode, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, countrycode, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, countrycode, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, countrycode, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.datasetkey = '040c5662-da76-4782-a48e-cdea1892d14c'
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.classificationdetails['d7dddbf4-2cf0-4f39-9b2a-bb099caae36c']['specieskey'] &lt;&gt; '' AND occurrence."year" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year",
 occurrence.countrycode

 The dataset's 848506 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003029-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.5mkkwh77c
title: Stable persistence of relict populations involved evolutionary shifts of reproductive characters in the genus Tanakaea (Saxifragaceae)

description: Tertiary relicts often show evolutionary stasis in morphology and ecology
 and have been hypothesised to retain stable population sizes in refugia.
 However, recent studies have reported that some relicts evolutionarily
 shifted their physiology, ecology, and morphology and experienced various
 patterns of demography. To understand the historical survival of relict
 plants, a multidimensional study investigating the evolution of ecological
 and morphological traits as well as population demographic history is
 needed. The genus Tanakaea (Saxifragaceae) comprises two species in China
 and Japan. These species share most vegetative characteristics and are
 sometimes treated as a single species. The distribution pattern is
 relictual, as the populations are confined to small areas in mesic warm
 temperate forests less influenced by Quaternary glacial climates. Focusing
 on the relictual plant group, this study tested the hypotheses of
 evolutionary stasis and population stability in long-term refugia. Genetic
 analyses using plastome sequences and genome-wide single nucleotide
 polymorphisms revealed divergence of the two species approximately 6.8
 million years ago and strong genetic differentiation of the regional
 populations. Demographic analysis revealed that almost all populations
 retained stable population sizes during glacial-interglacial climate
 changes, supporting the traditional view. However, morphological
 assessments revealed a simultaneous shift in breeding systems (from
 hermaphrodite to dioecy/non-clonal to clonal reproduction) in Japanese
 species and intraspecific differentiation of leaf traits. Therefore, the
 relict species do not show evolutionary stasis in every aspect. Changes in
 reproductive characteristics may have contributed to their long-term in
 situ survival.
DOI: 10.7280/d1m11m
title: Data files for simulated advanced adenoma age incidence, under aspirin treatment

description: Aspirin intake has been shown to lead to significant protection against
 colorectal cancer, e.g. with an up to two-fold reduction in colorectal
 adenoma incidence rates at higher doses. The mechanisms contributing to
 protection are not yet fully understood. While aspirin is an
 anti-inflammatory drug and can thus influence the tumor microenvironment,
 in vitro and in vivo experiments have recently shown that aspirin can also
 have a direct effect on cellular kinetics and fitness. It reduces the rate
 of tumor cell division and increases the rate of cell death. The question
 arises whether such changes in cellular fitness are sufficient to
 significantly contribute to the epidemiologically observed protection. To
 investigate this, we constructed a class of mathematical models of in vivo
 evolution of advanced adenomas, parameterized it with available estimates,
 and calculated population level incidence. Fitting the predictions to age
 incidence data revealed that only a model that included colonic crypt
 competition can account for the observed age-incidence curve. This model
 was then used to predict modified incidence patterns if cellular kinetics
 were altered as a result of aspirin treatment. We found that changes in
 cellular fitness that were within the experimentally observed ranges could
 reduce advanced adenoma incidence by a sufficient amount to account for
 age incidence data in aspirin-treated patient cohorts. While the
 mechanisms that contribute to the protective effect of aspirin are likely
 complex and multi-factorial, our study demonstrates that direct
 aspirin-induced changes of tumor cell fitness can significantly contribute
 to epidemiologically observed reduced incidence patterns. Data files that
 were generated to create predicted advanced adenoma age incidence curves
 for virtual patients that received different doses of aspirin for
 different decades of their lives. These data files are then processed by
 using Mathematica code (Code_Fig4.nb) that is included.
DOI: 10.5061/dryad.sn02v6x5f
title: Introduced honey bees increase host plant abundance but decrease native bumble bee species richness and abundance

description: Long-term variation in the population density of introduced honey bees
 (Apis mellifera) has been shown to be associated with variations in floral
 traits in alpine lotus (Saussurea nigrescens). However, it remains to be
 determined whether a high density of honey bees affects the abundance of
 nectariferous plants and the species richness and abundance of native
 bumble bees. We predicted that a high density of introduced honey bees
 lasting three decades would decrease the species richness and abundance of
 native bumble bees but increase the abundance of honeybee host plant
 species. Here, the field experiments were conducted to examine the
 diversity of nectariferous plants and native bumble bees along the typical
 gradients of honey bee density (high density of honey bee at close apiary
 and low density of honey bee at distant of apiary). We investigated
 nectariferous plant abundance, floral and seed traits, bumble bee species
 richness and abundance at sites with either a high or low honey bee
 density in an alpine meadow. Our results demonstrated that an increased
 population of introduced honey bees was associated with increased host
 plant abundance and flower/capitula number per plant but decreased nectar
 volume per flower, seed mass, species richness and abundance of native
 bumble bees. The bumble bee visitation rate was positively correlated with
 nectar volume per flower at sites close to and far from apiaries. The
 honey bee visitation rate was positively correlated with flower/capitula
 number per plant at sites close to apiaries and nectar volume per flower
 at sites far from apiaries. Seed mass was negatively correlated with
 nectariferous plant abundance. Our findings showed that introduced honey
 bees decreased the species richness and abundance of native bumble bees,
 attributed to evolutionary decrease nectar resources among honey bee host
 plant species, but increased the abundance of nectariferous plants,
 attributed to the production of many small seeds by plants. This suggests
 that long-term high-density beekeeping affects the biodiversity of honey
 bee host plants and native bumble bees. Our results provide new insights
 into the mechanisms of maintaining the biodiversity of nectariferous
 plants and native bumble bees.
DOI: 10.5061/dryad.ghx3ffbqp
title: Altitude-mediated soil properties, not geography or climatic distance, explain the distribution of a tropical endemic herb

description: Understanding the ecological processes that govern species’ range margins
 is a fundamental question in ecology with practical implications in
 conservation biology. The centre-periphery
 hypothesis (CPH) predicts that organisms have higher abundance at
 the centre of their geographic range. However, most tests of the CPH often
 used raster data, assuming that climatic conditions are consistent across
 one square km. This assumption is not always justified, particularly for
 species that live in mountainous regions where climatic conditions often
 vary widely across a small special scale. When using occurrence
 data, most previous studies do not evenly sample across the
 species’ distribution. We sampled 54 plots of an endemic perennial
 herb, Thunbergia atacorensis (Acanthanceae), throughout
 its range in West-Africa to collect biotic and abiotic variables
 including, Thunbergia density, leaf mass per area, and
 basal diameter. The basal diameter was used to estimate population
 demographic structure (skewness). We used these data to build a
 structural equation model testing the direct and indirect effects
 of distance from geographic and climatic niche centres, and altitude on
 density of Thunbergia atacorensis as mediated by abiotic
 and biotic factors, population skewness, and individual size. Contrary to
 the prediction of the CPH, plant density did not vary with distance from
 geographic or climatic niche centre, indicating that even the climatic
 centre does not necessarily have optimal ecological conditions. However,
 soil nitrogen and soil potassium mediated the relationship between
 altitude and plant density. Further, plant size increased with
 soil nitrogen and soil potassium. We found no direct or mediating effect
 of interspecific competition on plant density. Our study highlights the
 relative role that abiotic factors play in shaping species range limits,
 and the critical role of altitudinal gradient.
description: We randomly established five 5 m x 5 m permanent plots to
 collect data on herbivory rate, interspecific competition among
 surrounding species, species diversity and abiotic soil data in
 12 populations of <i>Thunbergia</i> atacorensis.
DOI: 10.57760/sciencedb.agriculture.00085
title: Beijing egg wholesale price dataset from 2012 to 2022
title: 2012-2022年北京市鸡蛋批发价格数据集

description: This data set is an EXCEL type file and contains 1 file with a total of 762 items of weekly, monthly, quarterly and annual average price, trend, seasonality, residual, month-on-month and year-on-year change rates of eggs in the Beijing wholesale market.
description: This data set is an EXCEL type file and contains 1 file with a total of 762 items of weekly, monthly, quarterly and annual average price, trend, seasonality, residual, month-on-month and year-on-year change rates of eggs in the Beijing wholesale market.
DOI: 10.6078/d1099s
title: Dataset: Aggregations reduce winter metabolic rates in the diapausing ladybeetle Hippodamia convergens

description: Energy conservation is linked to survival and fitness of overwintering
 ectotherms, and is particularly critical in winter. Although many insects
 overwinter individually, some form aggregations with conspecifics.
 Aggregations cause metabolic suppression in some insects, but the effect
 of aggregations on metabolic rates and energy use in overwintering
 aggregations remains underexplored. The convergent ladybeetle (Hippodamia
 convergens) overwinters in massive aggregations, making it an ideal system
 for testing the effect of aggregation size on metabolic rates in
 overwintering insects. We measured metabolic rates of beetle aggregations
 of 1, 10, 25, and 50 individuals using stop-flow respirometry across two
 ecologically relevant temperatures, and measured locomotor activity as one
 possible driver of group effects on metabolic rate. Metabolic rates per
 beetle decreased with increasing aggregation size at both temperatures,
 but was more pronounced at low temperatures. Metabolic rates scaled
 hypometrically with mass, with deeper response at cool temperatures.
 Activity decreased with aggregation size, but only at low temperatures.
 These results suggest that individuals within aggregations enter a deeper
 metabolically inactive state that single individual beetles cannot
 achieve, which is partly but not completely explained by a reduction in
 locomotor activity. This group strategy for energy conservation may
 provide an additional selective advantage for the evolution of large
 overwintering aggregations.
DOI: 10.5061/dryad.cnp5hqc64
title: A single locus regulates a female-limited color pattern polymorphism in a reptile

description: Animal coloration is often expressed in periodic patterns that can arise
 from differential cell migration, yet how these processes are regulated
 remains elusive. We show that a female-limited polymorphism in dorsal
 patterning (diamond/chevron) in the brown anole is controlled by a single
 Mendelian locus. This locus contains the gene CCDC170 that is adjacent to,
 and co-expressed with, the Estrogen receptor-1 gene, explaining why the
 polymorphism is female-limited. CCDC170 is an organizer of the
 Golgi-microtubule network underlying a cell’s ability to migrate and the
 two segregating alleles encode structurally different proteins. Our
 agent-based modeling of skin development demonstrates that, in principle,
 a change in cell migratory behaviors is sufficient to switch between the
 two morphs. These results suggest that CCDC170 might have been co-opted as
 a switch between color patterning morphs, likely by modulating cell
 migratory behaviors.
description: The ReadMe file contains all necessary information.
DOI: 10.5061/dryad.ghx3ffbqq
title: Data from: Predicting habitat suitability and connectivity for management and conservation of urban wildlife: A real-time web application for grassland water voles

description: Natural habitats in urban areas provide benefits for both humans and
 biodiversity. However, to achieve biodiversity gains we require new
 techniques to determine habitat suitability and ecological connectivity
 that will inform urban planning and development. Using an example of an
 urban population of water voles (Arvicola amphibius) we developed a
 habitat suitability model and a resistance-surface-based model of
 landscape connectivity to identify potential connectivity between areas of
 suitable habitat. We then updated the environmental variables according to
 new urban development plans and used our models to generate spatially
 explicit predictions of both habitat suitability and connectivity. To make
 models accessible to urban and conservation planners we developed an
 interactive mapping tool that provided users with a graphical user
 interface (GUI) to inform conservation planning for this species. The
 model found that habitat suitability for water voles was related to
 distance from key environmental variables, such as built-up areas and
 urban green spaces, while the connectivity model identified important
 corridors connecting areas of potential distribution for this species.
 Future development plans altered the potential spatial distribution of the
 water vole population, reducing the extent of suitable habitat in some
 core areas. The interactive mapping tool made available suitable habitat
 and connectivity maps for conservation managers to assess new planning
 applications and for the development of a conservation action plan for
 water voles. Synthesis and applications: We believe this approach provides
 a framework for future development of nature conservation tools that can
 be used by planners to inform ecological decision making, increase
 biodiversity and reduce human-wildlife conflict in urban environments.
description: This dataset contains the R script for the interactive software
 (which can be found at: https://boydorr.gla.ac.uk/lucanelli/watervole/). <em>ENV.Rdata</em>: R workspace. Make sure you load it before running the Shiny app. <em>app.R</em>: R code of the Shiny app <em>test_files.zip</em>: folder with shapefiles of the proposed development, to test the app. <em>watervole_guide_1.1.docx</em>: instructions on how to use the app. Any question, please contact me: luca.nelli@glasgow.ac.uk
DOI: 10.15468/dl.jszbd4
title: Occurrence Download

description: A dataset containing 3291 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypolycaena erylus"
 ]
}

 The dataset includes 3291 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003023-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.z08kprrf3
title: Cladistic matrix targeted at resolving relationships between fossil birds from the Changma locality of the Lower Cretaceous Xiagou Formation

description: We describe six specimens consisting of cranial remains and associated
 partial presacral axial series belonging to ornithuromorph birds from the
 Changma locality of the Lower Cretaceous Xiagou Formation of northwestern
 Gansu Province, China. Comparison among specimens is limited by the
 paucity of overlapping elements, their differing exposed views, and, in
 some specimens, poor preservation. Despite this, three separate taxa are
 represented, evidenced by differences in their dentary dentitions: one
 specimen is edentulous, another has sharp, closely spaced, relatively
 high-crowned and peg-like teeth, and a third preserves blunt, relatively
 low-crowned teeth placed in a communal groove, a morphology previously
 reported among adult birds only in Hesperornithiformes. We propose that
 the high-crowned specimen may be referred to Gansus yumenensis based on
 shared similarities with the closely related Iteravis huchzermeyeri,
 including a very similar dentition and an edentulous premaxilla with
 elongate, unfused frontal processes and no palatal processes. The two
 other specimens are considered new taxa, for which we erect the names
 Meemannavis ductrix gen. et sp. nov. and Brevidentavis zhangi gen. et sp.
 nov. These new specimens confirm that the Changma locality is dominated by
 ornithuromorph birds and contribute to a better understanding of this
 important avifauna. The observed variation in dental morphology hints at
 trophic diversity like that observed in ornithuromorphs from the
 penecontemporaneous Jehol Group of northeastern China.
DOI: 10.6076/d11p4n
title: Behavioral context affects social signal representations within single primate prefrontal cortex neurons

description: We tested whether social signal processing in more traditional,
 head-restrained contexts is representative of the putative natural analog
 – social communication – by comparing responses to vocalizations within
 individual neurons in marmoset prefrontal cortex (PFC) across a series of
 behavioral contexts ranging from traditional to naturalistic. Although
 vocalization responsive neurons were evident in all contexts,
 cross-context consistency was notably limited. A response to these social
 signals when subjects were head-restrained was not predictive of a
 comparable neural response to the identical vocalizations during natural
 communication. This pattern was evident both within individual neurons and
 at a population level, as PFC activity could be reliably decoded for the
 behavioral context in which vocalizations were heard. These results
 suggests that neural representations of social signals in primate PFC are
 not static, but highly flexible and likely reflect how nuances of the
 dynamic behavioral contexts affect the perception of these signals and
 what they communicate.
DOI: 10.7272/q63f4mw3
title: Comparable impairment of vascular endothelial function by a wide range of electronic nicotine delivery devices

description: Introduction  Electronic nicotine delivery systems (ENDS; i.e.,
 vaping devices) such as e-cigarettes, heated tobacco products, and newer
 coil-less ultrasonic vaping devices are promoted as less harmful
 alternatives to combustible cigarettes. However, their cardiovascular
 effects are understudied. We investigated whether exposure to aerosol from
 a wide range of ENDS devices, including a new ultrasonic vaping device,
 impairs endothelial function. Methods  We measured arterial
 flow-mediated dilation (FMD) in rats (n=8/group) exposed to single session
 of 10 cycles of pulsatile 5s exposure over 5 minutes to aerosol from
 e-liquids with and without nicotine generated from a USONICIG ultrasonic
 vaping device, previous generation e-cigarettes, 5% nicotine JUUL pods
 (Virginia Tobacco, Mango, Menthol), and an IQOS heated tobacco product;
 with Marlboro Red cigarette smoke and clean air as controls.  We
 evaluated nicotine absorption and serum nitric oxide levels after
 exposure, and effects of different nicotine acidifiers on platelet
 aggregation. Results  Aerosol/smoke from all conditions except
 air significantly impaired FMD. Serum nicotine varied widely from highest
 in the IQOS group to lowest in USONICIG and previous generation e-cig
 groups. NO levels were not affected by exposure. Exposure to JUUL and
 similarly acidified nicotine salt e-liquids did not affect platelet
 aggregation rate. Despite lack of heating coil, the USONICIG under airflow
 conditions heated e-liquid to ~77˚C.   Conclusions  A
 wide range of ENDS, including multiple types of e-cigarettes with and
 without nicotine, a heated tobacco product, and an ultrasonic vaping
 device devoid of heating coil, all impair FMD after a single vaping
 session comparably to combusted cigarettes.
DOI: 10.18150/grjipb
title: The insights into the activity of the extracts from Polygonum aviculare L. and Pseudomonas fluorescens for enhancing and modeling seed germination and seedling growth of Melilotus officinalis L. Lam

description: wyniki badań, uzyskane w projekcie posłużyły do poszerzenia wglądu w ich działanie, połączone z działaniem bakterii, pożytecznych dla roślin