cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10700529
title: How psychological safety cultivates behaviors aimed at enhancing software quality in agile teams?

description: Psychological safety continues to pique the interest of scholars in a variety of disciplines of study. Recent research indicates that psychological safety fosters knowledge sharing and norm clarity and complements agile values. Although software quality remains a concern in the software industry, academics have yet to investigate whether and how psychologically safe teams provide superior results. In this study, we explore how psychological safety influences agile teams' quality-related behaviors aimed at enhancing software quality. To widen the empirical coverage and evaluate the results, we chose a two-phase mixed-methods research design with an exploratory qualitative phase (20 interviews) followed by a quantitative phase (survey study, N = 423). Our findings show that, when psychological safety is established in agile software teams, it induces enablers of a social nature that advance the teams' ability to pursue software quality. For example, admitting mistakes and taking initiatives equally help teams learn and invest their learning in their future decisions related to software quality. Past mistakes become points of reference for avoiding them in the future. Individuals become more willing to take initiatives \new{aimed at enhancing} quality practices and mitigating software quality issues. We contribute to our endeavor to understand the circumstances that promote software quality. Psychological safety requires organizations, their management, agile teams, and individuals to maintain and propagate safety principles. Our results also suggest that technological tools and procedures can be utilized alongside social strategies to promote software quality.
DOI: 10.6084/m9.figshare.25283377
title: Northern Metro State Electoral Division data (Victoria)

description: Datasets compiled and modified from the Australian Bureau of Statistics 2021 census (state electoral divisions in the Northern Metro), and Victorian Electoral Commission 2022 state elections (Northern Metro, primary vote in lower house).
DOI: 10.6084/m9.figshare.25283377.v1
title: Northern Metro State Electoral Division data (Victoria)

description: Datasets compiled and modified from the Australian Bureau of Statistics 2021 census (state electoral divisions in the Northern Metro), and Victorian Electoral Commission 2022 state elections (Northern Metro, primary vote in lower house).
DOI: 10.34740/kaggle/dsv/7691337
title: Injury prediction dataset
DOI: 10.6084/m9.figshare.25283386
title: Extreme cold air around the North Pacific attributed to the tropical stratosphere in recent decades

description: The CESM2 nudging experimental results for geopotential height at 850 hPa and 50 hPa. A detail description is show in paper 'Extreme cold air around the North Pacific attributed to the tropical stratosphere in recent decades'
DOI: 10.6084/m9.figshare.25283386.v1
title: Extreme cold air around the North Pacific attributed to the tropical stratosphere in recent decades

description: The CESM2 nudging experimental results for geopotential height at 850 hPa and 50 hPa. A detail description is show in paper 'Extreme cold air around the North Pacific attributed to the tropical stratosphere in recent decades'
DOI: 10.34740/kaggle/dsv/7691540
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.6084/m9.figshare.25256965
title: Characterizing Software Architectural Metrics for Continuous Compliance in the Automotive Domain

description: The artifact contains an .xlsx table. The table shows all the metrics that were selected for the purposes of the paper. Each metric has a name and the relative title of the paper from which it was extracted. There are then 8 columns that represent the characteristics of the framework for evaluating the metrics based on Continuous Compliance. The last column shows the score of the metric calculated based on the characteristics of the framework.
DOI: 10.6084/m9.figshare.25256965.v2
title: Characterizing Software Architectural Metrics for Continuous Compliance in the Automotive Domain

description: The artifact contains an .xlsx table. The table shows all the metrics that were selected for the purposes of the paper. Each metric has a name and the relative title of the paper from which it was extracted. There are then 8 columns that represent the characteristics of the framework for evaluating the metrics based on Continuous Compliance. The last column shows the score of the metric calculated based on the characteristics of the framework.
DOI: 10.6084/m9.figshare.25256965.v3
title: Characterizing Software Architectural Metrics for Continuous Compliance in the Automotive Domain

description: The artifact contains an .xlsx table. The table shows all the metrics that were selected for the purposes of the paper. Each metric has a name and the relative title of the paper from which it was extracted. There are then 8 columns that represent the characteristics of the framework for evaluating the metrics based on Continuous Compliance. The last column shows the score of the metric calculated based on the characteristics of the framework.
DOI: 10.6084/m9.figshare.22139932
title: Phage-inspired strategies to combat antibacterial resistance

description: Antimicrobial resistance (AMR) in clinically priority pathogensis now a major threat to public health worldwide. Phages are bacterial parasites that efficiently infect or kill specific strains and represent the most abundant biological entities on earth, showing great attraction as potential antibacterial therapeutics in combating AMR. This review provides a summary of phage-inspired strategies to combat AMR. We firstly cover the phage diversity, and then explain the biological principles of phage therapy that support the use of phages in the post-antimicrobial era. Furthermore, we state the versatility methods of phage therapy both from direct access as well as collateral access. Among the direct access approaches, we discuss the use of phage cocktail therapy, phage-encoded endolysins and the bioengineering for function improvement of used phages or endolysins. On the other hand, we introduce the collateral access, including the phages antimicrobial immunity combined therapy and phage-based novel antibacterial mimic molecules. Nowadays, more and more talented and enthusiastic scientist, doctors, pharmacists, media, authorities, and industry are promoting the progress of phage therapy, and proposed more phages-inspired strategy to make them more tractable to combat AMR and benefit more people, more animal and diverse environment in “one health” framework.
DOI: 10.6084/m9.figshare.22139932.v1
title: Phage-inspired strategies to combat antibacterial resistance

description: Antimicrobial resistance (AMR) in clinically priority pathogensis now a major threat to public health worldwide. Phages are bacterial parasites that efficiently infect or kill specific strains and represent the most abundant biological entities on earth, showing great attraction as potential antibacterial therapeutics in combating AMR. This review provides a summary of phage-inspired strategies to combat AMR. We firstly cover the phage diversity, and then explain the biological principles of phage therapy that support the use of phages in the post-antimicrobial era. Furthermore, we state the versatility methods of phage therapy both from direct access as well as collateral access. Among the direct access approaches, we discuss the use of phage cocktail therapy, phage-encoded endolysins and the bioengineering for function improvement of used phages or endolysins. On the other hand, we introduce the collateral access, including the phages antimicrobial immunity combined therapy and phage-based novel antibacterial mimic molecules. Nowadays, more and more talented and enthusiastic scientist, doctors, pharmacists, media, authorities, and industry are promoting the progress of phage therapy, and proposed more phages-inspired strategy to make them more tractable to combat AMR and benefit more people, more animal and diverse environment in “one health” framework.
DOI: 10.6084/m9.figshare.24899238
title: Group A <i>Streptococcus</i> adaptation to diverse niches: lessons from transcriptomic studies

description: Group A Streptococcus (GAS) is a major human pathogen, causing diseases ranging from mild superficial infections of the skin and pharyngeal epithelium to severe systemic and invasive diseases. Moreover, post infection auto-immune sequelae arise by a yet not fully understood mechanism. The ability of GAS to cause a wide variety of infections is linked to the expression of a large set of virulence factors and their transcriptional regulation in response to various physiological environments. The use of transcriptomics, among others -omics technologies, in addition to traditional molecular methods, has led to a better understanding of GAS pathogenesis and host adaptation mechanisms. This review focusing on bacterial transcriptomic provides new insight into gene-expression patterns <i>in vitro, ex vivo</i> and <i>in vivo</i> with an emphasis on metabolic shifts, virulence genes expression and transcriptional regulators role.
DOI: 10.6084/m9.figshare.24899238.v1
title: Group A <i>Streptococcus</i> adaptation to diverse niches: lessons from transcriptomic studies

description: Group A Streptococcus (GAS) is a major human pathogen, causing diseases ranging from mild superficial infections of the skin and pharyngeal epithelium to severe systemic and invasive diseases. Moreover, post infection auto-immune sequelae arise by a yet not fully understood mechanism. The ability of GAS to cause a wide variety of infections is linked to the expression of a large set of virulence factors and their transcriptional regulation in response to various physiological environments. The use of transcriptomics, among others -omics technologies, in addition to traditional molecular methods, has led to a better understanding of GAS pathogenesis and host adaptation mechanisms. This review focusing on bacterial transcriptomic provides new insight into gene-expression patterns <i>in vitro, ex vivo</i> and <i>in vivo</i> with an emphasis on metabolic shifts, virulence genes expression and transcriptional regulators role.
DOI: 10.6084/m9.figshare.25257052
title: We're Drifting Apart: Architectural Drift from the Developers' Perspective

description: The artifact contains all the data we used to write the article. We can divide the data into two categories, the first concerning the interviews and the second concerning the Survey. For reasons of privacy we were unable to make the transcripts of the interviews public. However, the results of the survey for each participant are public, these data have been anonymized by removing any information that could have been traced back to the survey participant.
DOI: 10.6084/m9.figshare.25257052.v1
title: We're Drifting Apart: Architectural Drift from the Developers' Perspective

description: The artifact contains all the data we used to write the article. We can divide the data into two categories, the first concerning the interviews and the second concerning the Survey. For reasons of privacy we were unable to make the transcripts of the interviews public. However, the results of the survey for each participant are public, these data have been anonymized by removing any information that could have been traced back to the survey participant.
DOI: 10.5281/zenodo.10700603
title: RECOMPTE SESSIONS COMPETÈNCIA DIGITAL ALUMNE
DOI: 10.6084/m9.figshare.24994465
title: Improved Understanding of the Macrofungal Diversity of Mongolia: Species Richness, Conservation Status, and An Annotated Checklist

description: In this study, we updated and revised the checklist of macrofungi, along with the distribution of phytogeographical regions and the regional conservation status in Mongolia. The checklist comprises 677 macrofungal species belonging to 284 genera and 119 families in the country. Based on previous studies, 18 species are currently invasive to Mongolia. In this checklist, only four species are endemic to Mongolia. Among the 677 species, the regional conservation status of 51 species was previously assessed as threatened in the country. Furthermore, we collected all available occurrence records from various sources. A total of 4733 occurrences of 655 species across Mongolia were analyzed for species richness based on a 0.5° × 0.5° grid cell size. We found the records to be unevenly distributed across Mongolia, where records from the northern and central parts dominate. Among these, we identified 43 grids with a high diversity of macrofungal species. Most of these grids did not reside inside by protected geographical areas.
DOI: 10.6084/m9.figshare.24994465.v1
title: Improved Understanding of the Macrofungal Diversity of Mongolia: Species Richness, Conservation Status, and An Annotated Checklist

description: In this study, we updated and revised the checklist of macrofungi, along with the distribution of phytogeographical regions and the regional conservation status in Mongolia. The checklist comprises 677 macrofungal species belonging to 284 genera and 119 families in the country. Based on previous studies, 18 species are currently invasive to Mongolia. In this checklist, only four species are endemic to Mongolia. Among the 677 species, the regional conservation status of 51 species was previously assessed as threatened in the country. Furthermore, we collected all available occurrence records from various sources. A total of 4733 occurrences of 655 species across Mongolia were analyzed for species richness based on a 0.5° × 0.5° grid cell size. We found the records to be unevenly distributed across Mongolia, where records from the northern and central parts dominate. Among these, we identified 43 grids with a high diversity of macrofungal species. Most of these grids did not reside inside by protected geographical areas.
DOI: 10.34740/kaggle/dsv/7691704
title: 2021 World Population (updated daily)
DOI: 10.34740/kaggle/dsv/7691711
title: ⏳ endoflife.date database (duckdb)
DOI: 10.5281/zenodo.10700602
title: RECOMPTE SESSIONS COMPETÈNCIA DIGITAL ALUMNE
DOI: 10.6084/m9.figshare.25283455.v1
title: Code implementation of the Bayesian autoencoder from Bayesian autoencoders for data-driven discovery of coordinates, governing equations and fundamental constants

description: Recent progress in autoencoder-based sparse identification of nonlinear dynamics (SINDy) under $\ell _1$ constraints allows joint discoveries of governing equations and latent coordinate systems from spatio-temporal data, including simulated video frames. However, it is challenging for $\ell _1$-based sparse inference to perform correct identification for real data due to the noisy measurements and often limited sample sizes. To address the data-driven discovery of physics in the low-data and high-noise regimes, we propose Bayesian SINDy autoencoders, which incorporate a hierarchical Bayesian Spike-and-slab Gaussian Lasso prior. Bayesian SINDy autoencoder enables the joint discovery of governing equations and coordinate systems with uncertainty estimate. To resolve the challenging computational tractability of the Bayesian hierarchical setting, we adapt an adaptive empirical Bayesian method with Stochatic gradient Langevin dynamics (SGLD) which gives a computationally tractable way of Bayesian posterior sampling within our framework. Bayesian SINDy autoencoder achieves better physics discovery with lower data and fewer training epochs, along with valid uncertainty quantification suggested by the experimental studies. The Bayesian SINDy autoencoder can be applied to real video data, with accurate physics discovery which correctly identifies the governing equation and provides a close estimate for standard physics constants like gravity <i>g</i>, for example, in videos of a pendulum.
DOI: 10.6084/m9.figshare.25283455
title: Code implementation of the Bayesian autoencoder from Bayesian autoencoders for data-driven discovery of coordinates, governing equations and fundamental constants

description: Recent progress in autoencoder-based sparse identification of nonlinear dynamics (SINDy) under $\ell _1$ constraints allows joint discoveries of governing equations and latent coordinate systems from spatio-temporal data, including simulated video frames. However, it is challenging for $\ell _1$-based sparse inference to perform correct identification for real data due to the noisy measurements and often limited sample sizes. To address the data-driven discovery of physics in the low-data and high-noise regimes, we propose Bayesian SINDy autoencoders, which incorporate a hierarchical Bayesian Spike-and-slab Gaussian Lasso prior. Bayesian SINDy autoencoder enables the joint discovery of governing equations and coordinate systems with uncertainty estimate. To resolve the challenging computational tractability of the Bayesian hierarchical setting, we adapt an adaptive empirical Bayesian method with Stochatic gradient Langevin dynamics (SGLD) which gives a computationally tractable way of Bayesian posterior sampling within our framework. Bayesian SINDy autoencoder achieves better physics discovery with lower data and fewer training epochs, along with valid uncertainty quantification suggested by the experimental studies. The Bayesian SINDy autoencoder can be applied to real video data, with accurate physics discovery which correctly identifies the governing equation and provides a close estimate for standard physics constants like gravity <i>g</i>, for example, in videos of a pendulum.
DOI: 10.34740/kaggle/dsv/7691740
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.10700606
title: azolla_pinnata_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10700607
title: azolla_pinnata_spades_01.fasta.gz

description: .
DOI: 10.6084/m9.figshare.24541147
title: <b>Chloroplast genome evolution of </b><b><i>Berberis </i></b><b>(Berberidaceae): implications for phylogeny and metabarcoding</b>

description: <i>Berberis</i> species play a crucial role in the formulation of Chinese patent medicine, Berberidis Radix, employed to address a range of ailments. These species have similar morphology, but different chemicals, potentially leading to misidentifications that can impact the medicine's efficacy. Therefore, it is imperative to develop suitable molecular markers to identify medicinal species. Furthermore, discrepancies exist in the taxonomy of the <i>Berberis</i> genus. In the current study, we <i>de novo</i> assembled the chloroplast genome of those six <i>Berberis</i> species (<i>B. </i><i>julianae</i>, <i>B. tsienii</i>, <i>B. pruinose</i>, <i>B. thunbergii</i>, <i>B. poiretii</i>, and <i>B. wilsoniae</i>) that commonly constitute Berberidis Radix, and compared them with other reported genomes. Our comparative analysis revealed similarities in genome structure, relative synonymous codon usage, amino acid frequency, repeats, and substitutions. Inverted repeats expansion and contraction affected the rate of mutations and found link to the phylogenetic classification of <i>Berberis</i>. We identified the <i>ndhD-ccsA</i> region as the most polymorphic region and applied it to the metabarcoding of Berberidis Radix medicine. The metabarcoding provided insight into their biological composition and confirmed six <i>Berberis </i>species commonly constitute Berberidis Radix. However, we also identified other <i>Berberis </i>species with lower read abundance. Our phylogenetic analysis supports the division of <i>Berberis</i> into four genera, which corroborates previous studies involving extensive sampling. In conclusion, this study offers comprehensive insights into the molecular evolution of the chloroplast genome and the phylogeny of the <i>Berberis</i> genus. Concurrently, through metabarcoding, we confirm the biological origin of Berberidis Radix, thus shedding light on its composition.
DOI: 10.6084/m9.figshare.24541147.v3
title: <b>Chloroplast genome evolution of </b><b><i>Berberis </i></b><b>(Berberidaceae): implications for phylogeny and metabarcoding</b>

description: <i>Berberis</i> species play a crucial role in the formulation of Chinese patent medicine, Berberidis Radix, employed to address a range of ailments. These species have similar morphology, but different chemicals, potentially leading to misidentifications that can impact the medicine's efficacy. Therefore, it is imperative to develop suitable molecular markers to identify medicinal species. Furthermore, discrepancies exist in the taxonomy of the <i>Berberis</i> genus. In the current study, we <i>de novo</i> assembled the chloroplast genome of those six <i>Berberis</i> species (<i>B. </i><i>julianae</i>, <i>B. tsienii</i>, <i>B. pruinose</i>, <i>B. thunbergii</i>, <i>B. poiretii</i>, and <i>B. wilsoniae</i>) that commonly constitute Berberidis Radix, and compared them with other reported genomes. Our comparative analysis revealed similarities in genome structure, relative synonymous codon usage, amino acid frequency, repeats, and substitutions. Inverted repeats expansion and contraction affected the rate of mutations and found link to the phylogenetic classification of <i>Berberis</i>. We identified the <i>ndhD-ccsA</i> region as the most polymorphic region and applied it to the metabarcoding of Berberidis Radix medicine. The metabarcoding provided insight into their biological composition and confirmed six <i>Berberis </i>species commonly constitute Berberidis Radix. However, we also identified other <i>Berberis </i>species with lower read abundance. Our phylogenetic analysis supports the division of <i>Berberis</i> into four genera, which corroborates previous studies involving extensive sampling. In conclusion, this study offers comprehensive insights into the molecular evolution of the chloroplast genome and the phylogeny of the <i>Berberis</i> genus. Concurrently, through metabarcoding, we confirm the biological origin of Berberidis Radix, thus shedding light on its composition.
DOI: 10.5281/zenodo.10700633
title: alaria_marginata_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10700634
title: alaria_marginata_spades_01.fasta.gz

description: .