cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6983058
title: Assembled mRNAs from potato genotypes contrasted for their hexanal isomerase activity

description: From PacBio and Illumina mRNA-seq coming from leaf total RNA isolated from three <em>Solanum tuberosum</em> genotypes (Desiree, Phureja153 and S869), mRNA isoforms were assembled. <strong>Phureja153:</strong> low (3Z):(2E) hexenal isomerase activity <strong>Desiree:</strong> mid (3Z):(2E) hexenal isomerase activity <strong>S869</strong>: high (3Z):(2E) hexenal isomerase activity <strong>== Step1: PacBio subreads to FASTA and GTF annotation == </strong> For each genotype, a FASTA file and a GTF annotation file are available. File is called "pacbio_assembled_isoforms.tar.gz". Pipeline used: https://github.com/SilkeAllmannLab/pacbio_snakemake/releases/tag/v0.1.0 Raw PacBio data submitted to NCBI EBI ENA under accession PRJXXX. === Step 2: SQANTI QC ==== SQANTI3 was run on these three PacBio assembled sets of transcript to correct them. The corrected transcripts and related SQANTI3 info are available in the "sqanti_corrected_transcripts.tar.gz" file.
DOI: 10.5281/zenodo.6983059
title: Assembled mRNAs from potato genotypes contrasted for their hexanal isomerase activity

description: From PacBio and Illumina mRNA-seq coming from leaf total RNA isolated from three <em>Solanum tuberosum</em> genotypes (Desiree, Phureja153 and S869), mRNA isoforms were assembled. <strong>Phureja153:</strong> low (3Z):(2E) hexenal isomerase activity <strong>Desiree:</strong> mid (3Z):(2E) hexenal isomerase activity <strong>S869</strong>: high (3Z):(2E) hexenal isomerase activity <strong>== Step1: PacBio subreads to FASTA and GTF annotation == </strong> For each genotype, a FASTA file and a GTF annotation file are available. File is called "pacbio_assembled_isoforms.tar.gz". Pipeline used: https://github.com/SilkeAllmannLab/pacbio_snakemake/releases/tag/v0.1.0 Raw PacBio data submitted to NCBI EBI ENA under accession PRJXXX.
DOI: 10.5281/zenodo.7021767
title: Assembled mRNAs from potato genotypes contrasted for their hexanal isomerase activity

description: From PacBio and Illumina mRNA-seq coming from leaf total RNA isolated from three <em>Solanum tuberosum</em> genotypes (Desiree, Phureja153 and S869), mRNA isoforms were assembled. <strong>Phureja153:</strong> low (3Z):(2E) hexenal isomerase activity <strong>Desiree:</strong> mid (3Z):(2E) hexenal isomerase activity <strong>S869</strong>: high (3Z):(2E) hexenal isomerase activity <strong>== Step1: PacBio subreads to FASTA and GTF annotation == </strong> For each genotype, a FASTA file and a GTF annotation file are available. File is called "pacbio_assembled_isoforms.tar.gz". Pipeline used: https://github.com/SilkeAllmannLab/pacbio_snakemake/releases/tag/v0.1.0 Raw PacBio data submitted to NCBI EBI ENA under accession PRJXXX. === Step 2: SQANTI QC ==== SQANTI3 was run on these three PacBio assembled sets of transcript to correct them. The corrected transcripts and related SQANTI3 info are available in the "sqanti_corrected_transcripts.tar.gz" file.
DOI: 10.6084/m9.figshare.12612416
title: Resilience of Spanish forests to recent droughts and climate change

description: This repository is for the datasets of “Resilience of Spanish forests to recent droughts and climate change” (Khoury and Coomes, 2020, GCB). The datasets include Satellite data, climate variables and elevation, all extracted and pre-processed in Google Earth Engine. They include species distribution maps and protect areas shapefiles used in the study. The code for the analyses done in R are available upon request. The datasets alongside the code can be used to reproduce the results of the paper. Please cite Khoury and Coomes (2020) or acknowledge this dataset 10.6084/m9.figshare.12612416.<br>
DOI: 10.6084/m9.figshare.20473738
title: ‘No longer solid’: perceived impacts of permafrost thaw in three Arctic communities

description: Permafrost characterizes ground conditions in most of the Arctic and is increasingly thawing. While environmental consequences of permafrost thaw are under intense scrutiny by natural and life sciences, social sciences' studies on local communities' perceptions of change is thus far limited. This hinders the development of targeted adaptation and mitigation measures. We present the results of a survey on communities' perceptions of permafrost thaw, with a focus on subsistence activities, carried out between 2019 and 2020 in Aklavik (Northwest Territories, Canada), Longyearbyen (Svalbard, Norway), and Qeqertarsuaq (Qeqertalik Municipality, Greenland). Results show that the majority of the 237 participants are well aware of the consequences of permafrost thaw on the landscape as well as the connection between increased air temperature and permafrost thaw. The majority perceive permafrost thaw negatively although they do not perceive it as a challenge in all life domains. Permafrost thaw is perceived as a major cause for challenges in subsistence activities, infrastructure, and the physical environment. Different perceptions within the three study communities suggests that perceptions of thaw are not solely determined by physical changes but also influenced by factors related to the societal context, including discourses of climate change, cultural background, and land use.
DOI: 10.6084/m9.figshare.20473738.v1
title: ‘No longer solid’: perceived impacts of permafrost thaw in three Arctic communities

description: Permafrost characterizes ground conditions in most of the Arctic and is increasingly thawing. While environmental consequences of permafrost thaw are under intense scrutiny by natural and life sciences, social sciences' studies on local communities' perceptions of change is thus far limited. This hinders the development of targeted adaptation and mitigation measures. We present the results of a survey on communities' perceptions of permafrost thaw, with a focus on subsistence activities, carried out between 2019 and 2020 in Aklavik (Northwest Territories, Canada), Longyearbyen (Svalbard, Norway), and Qeqertarsuaq (Qeqertalik Municipality, Greenland). Results show that the majority of the 237 participants are well aware of the consequences of permafrost thaw on the landscape as well as the connection between increased air temperature and permafrost thaw. The majority perceive permafrost thaw negatively although they do not perceive it as a challenge in all life domains. Permafrost thaw is perceived as a major cause for challenges in subsistence activities, infrastructure, and the physical environment. Different perceptions within the three study communities suggests that perceptions of thaw are not solely determined by physical changes but also influenced by factors related to the societal context, including discourses of climate change, cultural background, and land use.
DOI: 10.5281/zenodo.6684550
title: Acartia tonsa 25 generation experimental evolution

description: Supplemental data for our <em>Acartia tonsa</em> 25 generation experimental evolution project.
DOI: 10.5281/zenodo.5093796
title: Acartia tonsa 25 generation experimental evolution

description: Supplemental data for our <em>Acartia tonsa</em> 25 generation experimental evolution project.
DOI: 10.5519/qd.9rwy5629
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1919 records)
DOI: 10.5517/ccdc.csd.cc28ly0v
title: CCDC 2103567: Experimental Crystal Structure Determination

description: Related Article: M. Jeremy Amdur, Kathleen R. Mullin, Michael J. Waters, Danilo Puggioni, Michael K. Wojnar, Mingqiang Gu, Lei Sun, Paul H. Oyala, James M. Rondinelli, Danna E. Freedman|2022|Chemical Science|13|7034|doi:10.1039/D1SC06130E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2915bw
title: CCDC 2116287: Experimental Crystal Structure Determination

description: Related Article: Zhen Xu, Duane Hean, Jennifer Yuan, Michael O. Wolf|2022|Chemical Science|13|6882|doi:10.1039/D2SC01922A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2915cx
title: CCDC 2116288: Experimental Crystal Structure Determination

description: Related Article: Zhen Xu, Duane Hean, Jennifer Yuan, Michael O. Wolf|2022|Chemical Science|13|6882|doi:10.1039/D2SC01922A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2915dy
title: CCDC 2116289: Experimental Crystal Structure Determination

description: Related Article: Zhen Xu, Duane Hean, Jennifer Yuan, Michael O. Wolf|2022|Chemical Science|13|6882|doi:10.1039/D2SC01922A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2915fz
title: CCDC 2116290: Experimental Crystal Structure Determination

description: Related Article: Zhen Xu, Duane Hean, Jennifer Yuan, Michael O. Wolf|2022|Chemical Science|13|6882|doi:10.1039/D2SC01922A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29gq2l
title: CCDC 2129299: Experimental Crystal Structure Determination

description: Related Article: Sébastien Néron, Mathieu Morency, Liguo Chen, Thierry Maris, Dominic Rochefort, Radu Iftimie, James D. Wuest|2022|J.Org.Chem.|87|7673|doi:10.1021/acs.joc.2c00260
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29113j
title: CCDC 2116156: Experimental Crystal Structure Determination

description: Related Article: Shang-Fu Yuan, Zong-Jie Guan, Quan-Ming Wang|2022|J.Am.Chem.Soc.|144|11405|doi:10.1021/jacs.2c04156
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29xsbc
title: CCDC 2142823: Experimental Crystal Structure Determination

description: Related Article: Joshua Csucker, Da Kyung Jo, Qaisar Nadeem, Olivier Blacque, Thomas Fox, Henrik Braband, Roger Alberto|2022|Dalton Trans.|51|9591|doi:10.1039/D2DT00743F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2btw8b
title: CCDC 2169822: Experimental Crystal Structure Determination

description: Related Article: Shun Irii, Takuya Ogaki, Hana Miyashita, Kazutaka Nobori, Yoshiki Ozawa, Masaaki Abe, Hiroyasu Sato, Eisuke Ohta, Yasunori Matsui, Hiroshi Ikeda|2022|Tetrahedron Lett.|101|153913|doi:10.1016/j.tetlet.2022.153913
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28nm2n
title: CCDC 2105181: Experimental Crystal Structure Determination

description: Related Article: K. Molčanov, V. Milašinović, B. Kojić-Prodić, N. Maltar-Strmečki, J. You, A. Šantić, L. Kanižaj, V. Stilinović, L. Fotović|2022|IUCrJ|9|449|doi:10.1107/S2052252522004717
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28nm9w
title: CCDC 2105188: Experimental Crystal Structure Determination

description: Related Article: K. Molčanov, V. Milašinović, B. Kojić-Prodić, N. Maltar-Strmečki, J. You, A. Šantić, L. Kanižaj, V. Stilinović, L. Fotović|2022|IUCrJ|9|449|doi:10.1107/S2052252522004717
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7018975
title: Mammal mitogenomics from invertebrate-derived DNA (iDNA)

description: Mitogenomic capture of Non-human Primates from invertebrate derived DNA using hybridisation capture. Files are in fastq format and sequenced with illumina Mi-Seq using the Mi-Seq Reagent Kit v3 (2 x 250bp; illumina) .
DOI: 10.5281/zenodo.7018974
title: Mammal mitogenomics from invertebrate-derived DNA (iDNA)

description: Mitogenomic capture of Non-human Primates from invertebrate derived DNA using hybridisation capture. Files are in fastq format and sequenced with illumina Mi-Seq using the Mi-Seq Reagent Kit v3 (2 x 250bp; illumina) .
DOI: 10.5281/zenodo.7009935
title: Anticipated versus Actual Effects of Platform Design Change: A Case Study of Twitter's Character Limit

description: The design of online platforms is both critically important and challenging, as any changes may lead to unintended consequences, and it can be hard to predict how users will react. Here we conduct a case study of a particularly important real-world platform design change: Twitter's decision to double the character limit from 140 to 280 characters to soothe users' need to "cram'' or "squeeze'' their tweets, informed by modeling of historical user behavior.<br> In our analysis, we contrast Twitter's anticipated pre-intervention predictions about user behavior with actual post-intervention user behavior: Did the platform design change lead to the intended user behavior shifts, or did a gap between anticipated and actual behavior emerge?<br> Did different user groups react differently?<br> We find that even though users do not "cram'' as much under 280 characters as they used to under 140 characters, emergent "cramming'' at the new limit seems to not have been taken into account when designing the platform change. Furthermore, investigating textual features, we find that, although post-intervention ``crammed'' tweets are longer, their syntactic and semantic characteristics remain similar and indicative of "squeezing''. Applying the same approach as Twitter policy-makers, we create updated counterfactual estimates and find that the character limit would need to be increased further to reduce cramming that re-emerged at the new limit.<br> We contribute to the rich literature studying online user behavior with an empirical study that reveals a dynamic interaction between platform design and user behavior, with immediate policy and practical implications for the design of socio-technical systems.
DOI: 10.5281/zenodo.7009934
title: Anticipated versus Actual Effects of Platform Design Change: A Case Study of Twitter's Character Limit

description: The design of online platforms is both critically important and challenging, as any changes may lead to unintended consequences, and it can be hard to predict how users will react. Here we conduct a case study of a particularly important real-world platform design change: Twitter's decision to double the character limit from 140 to 280 characters to soothe users' need to "cram'' or "squeeze'' their tweets, informed by modeling of historical user behavior.<br> In our analysis, we contrast Twitter's anticipated pre-intervention predictions about user behavior with actual post-intervention user behavior: Did the platform design change lead to the intended user behavior shifts, or did a gap between anticipated and actual behavior emerge?<br> Did different user groups react differently?<br> We find that even though users do not "cram'' as much under 280 characters as they used to under 140 characters, emergent "cramming'' at the new limit seems to not have been taken into account when designing the platform change. Furthermore, investigating textual features, we find that, although post-intervention ``crammed'' tweets are longer, their syntactic and semantic characteristics remain similar and indicative of "squeezing''. Applying the same approach as Twitter policy-makers, we create updated counterfactual estimates and find that the character limit would need to be increased further to reduce cramming that re-emerged at the new limit.<br> We contribute to the rich literature studying online user behavior with an empirical study that reveals a dynamic interaction between platform design and user behavior, with immediate policy and practical implications for the design of socio-technical systems.
DOI: 10.6084/m9.figshare.20624610.v1
title: Data of TCR-7I: Lightweight humanoid collaborative manipulator for high-efficiency safety interaction

description: Data of TCR-7I: Lightweight humanoid collaborative manipulator for high-efficiency safety interaction
DOI: 10.6084/m9.figshare.20624610.v2
title: Data of TCR-7I: Lightweight humanoid collaborative manipulator for high-efficiency safety interaction

description: Data of TCR-7I: Lightweight humanoid collaborative manipulator for high-efficiency safety interaction
DOI: 10.6084/m9.figshare.20624610.v3
title: Data of TCR-7I: Lightweight humanoid collaborative manipulator for high-efficiency safety interaction

description: Data of TCR-7I: Lightweight humanoid collaborative manipulator for high-efficiency safety interaction
DOI: 10.5282/ubm/data.314
title: Comprehensive comparison between azacytidine and decitabine treatment in an acute myeloid leukemia cell line

description: Azacytidine (AzaC) and decitabine (AzadC) are cytosine analogs that covalently trap DNA methyltransferases, which place the important epigenetic mark 5-methyl-2’-deoxycytidine by methylating 2’-deoxycytidine (dC) at the C5 position. AzaC and AzadC are used in the clinic as antimetabolites to treat myelodysplastic syndrome and acute myeloid leukemia and are explored against other types of cancer. Although their principal mechanism of action is known, the downstream effects of AzaC and AzadC treatment are not well understood and the cellular prerequisites that determine sensitivity towards AzaC and AzadC remain elusive. Here, we investigated the effects and phenotype of AzaC and AzadC exposure on the acute myeloid leukemia cell line MOLM-13. We found that while AzaC and AzadC share many effects on the cellular level, including decreased global DNA methylation, increased formation of DNA double strand breaks, transcriptional downregulation of important oncogenes and similar changes on the proteome level, AzaC failed in contrast to AzadC to induce apoptosis efficiently in MOLM-13. The only cellular marker that correlated with this clear phenotypical outcome was the level of hydroxy-methyl-dC, an additional epigenetic mark that is placed by TET enzymes and repressed in cancer cells. Whereas AzadC increased hmdC substantially in MOLM-13, AzaC treatment did not result in any increase at all. This suggests that hmdC levels in cancer cells should be monitored as a response towards AzaC and AzadC and considered as a biomarker to judge whether AzaC or AzadC treatment leads to cell death in leukemic cells.
DOI: 10.5523/bris.1b5yd1dy3deyj2ok2v5em94pac
title: Flood and drought worldwide hotspots database

description: Database of worldwide flood and drought worldwide, as published by Beevers et al. (2022) "Identifying hotspots of hydro-hazards under global change: a worldwide review"
DOI: 10.5281/zenodo.7007168
title: Experimental data linked to publication "Process optimization and study of the co-sintering behaviour of Cu-Ni multi-material 3D structures fabricated by spark plasma sintering (SPS)"

description: Those are all the experimental data used to produce the plots in the article
DOI: 10.5281/zenodo.7007167
title: Experimental data linked to publication "Process optimization and study of the co-sintering behaviour of Cu-Ni multi-material 3D structures fabricated by spark plasma sintering (SPS)"

description: Those are all the experimental data used to produce the plots in the article