cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1152410.10fu
title: SH1152410.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1152412.10fu
title: SH1152412.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1152414.10fu
title: SH1152414.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1152415.10fu
title: SH1152415.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1152416.10fu
title: SH1152416.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.21227/k3fj-mz16
title: "Pose and Temperature Control of an Eddy-Current-Induced Magnetic Dipole"

description: "This data set supports demonstration of simultaneous control of position, heading and temperature of an induced magnetic dipole. Oscillating magnetic fields are generated using an array of four-electromagnets, and electrical conductors in this time-varying field generate eddy-currents as a result of the fields. The induced magnetic dipole within the sample are used as a mechanism for controlling position, heading and temperature. The data provided shows verification of mathematical models, as well as sample state as it completes prescribed trajectories. "
DOI: 10.15156/bio/sh1152417.10fu
title: SH1152417.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.t8c589
title: Occurrence Download

description: A dataset containing 645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sabal mexicana Mart."
 ]
}

 The dataset includes 645 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025429-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.49wxez
title: Occurrence Download

description: A dataset containing 171523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Chlorospingus flavopectus (Lafresnaye, 1840)"
 ]
}

 The dataset includes 171523 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025409-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r63wbg
title: Occurrence Download

description: A dataset containing 128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dalbergia congestiflora Pittier)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 128 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025433-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4t9pg
title: Occurrence Download

description: A dataset containing 34566 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Chlorospingus pileatus Salvin, 1865"
 ]
}

 The dataset includes 34566 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025434-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2x8ev
title: Occurrence Download

description: A dataset containing 25977 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Chlorospingus semifuscus P.L.Sclater & Salvin, 1873"
 ]
}

 The dataset includes 25977 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025432-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5pprj
title: Occurrence Download

description: A dataset containing 19225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Specimen)",
 "TaxonKey is Puma concolor (Linnaeus, 1771)",
 "Year 1970-2025"
 ]
}

 The dataset includes 19225 records from 308 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025430-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28654469
title: Subplot boundaries

description: Shapefile of subplot boundaries within saguaro survey plots on Tumamoc Hill
DOI: 10.15468/dl.w7ymd2
title: Occurrence Download

description: A dataset containing 313889 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Turdus leucomelas Vieillot, 1818"
 ]
}

 The dataset includes 313889 records from 306 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025412-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvseg6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dalbergia funera Standl.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025435-250310093411724/datasets/export for details.
DOI: 10.6084/m9.figshare.28654379
title: Boundaries.dbf

description: Survey plot boundaries on Tumamoc Hill
DOI: 10.15468/dl.mqrmky
title: Occurrence Download

description: A dataset listing the 314335 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidoptera"
 ]
}

 The dataset's 314335 records were derived from 11031 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025424-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/gm7-586-amm
title: Leocrates chinensis Kinberg, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p0w-1te-t2y
title: Dugesia japonica Ichikawa & Kawakatsu, 1964

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3867901_d8.v1
title: Additional file 17: Table S10. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Top 10 predicted targets for the nine TAL effectors with unique RVD sequences retrieved in 17 X. citri pv. fuscans and X. phaseoli pv. phaseoli strains. Target names correspond to locus tags from the P. vulgaris genome available at https://phytozome.jgi.doe.gov/ . Similar targets predicted for different TAL effectors are highlighted by colours corresponding to the predicted function of the target (see the legend below). (XLSX 17 kb)
DOI: 10.3535/40s-9pl-g6k
title: Ascaridia Dujardin, 1844

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9yk-1z3-4yk
title: Phagocata vivida (Ijima & Kaburaki, 1916)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d02-yya-6l7
title: Dugesia elegans De Vries, 1984

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3867901_d6
title: Additional file 15: Table S9. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Repeats found within all TAL effectors from X. citri pv. fuscans, X. phaseoli pv. phaseoli, X. citri pv. aurantifolii and X. phaseoli pv. manihotis strains. Sequences were compared after removal of RVD. Xcf = X. citri pv. fuscans; Xpp = X. phaseoli pv. phaseoli; Xca = X. citri pv. aurantifolii; Xpm = X. phaseoli pv. manihotis. A coloured line indicates that the repeat is shared between TAL effectors from different groups, one colour being associated with a single repeat and corresponding to the colour of repeats in Additional file 16: Figure S7. (XLSX 12 kb)
DOI: 10.3535/6c8-0sb-zv1
title: Sangiria hystrix Horst, 1911

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xhe-kkb-x91
title: Harmothoe impar (Johnston, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/129-qdz-qes
title: Harmothoe impar (Johnston, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3867901_d8
title: Additional file 17: Table S10. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Top 10 predicted targets for the nine TAL effectors with unique RVD sequences retrieved in 17 X. citri pv. fuscans and X. phaseoli pv. phaseoli strains. Target names correspond to locus tags from the P. vulgaris genome available at https://phytozome.jgi.doe.gov/ . Similar targets predicted for different TAL effectors are highlighted by colours corresponding to the predicted function of the target (see the legend below). (XLSX 17 kb)
DOI: 10.3535/245-27t-5g9
title: Admetella longipedata (McIntosh, 1885)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cq5-8np-grc
title: Alitta succinea (Leuckart, 1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3867901_d11.v1
title: Additional file 1: Table S1. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Correction of sequences from tal pseudogenes containing indels in the SMRT sequence. (XLSX 10 kb)
DOI: 10.3535/0vl-d6z-t70
title: Seidlia auriculata (Ijima & Kaburaki, 1916)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fv9-jq9-f8e
title: Ophelina ehlersi (Horst, 1919)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/404-1w6-ws0
title: Cura pinguis (Weiss, 1909)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hgx-sxf-dpl
title: Perinereis binongkae (Horst, 1924)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.vfw5nt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coptotermes gestroi (Wasmann, 1896)",
 "Country is Fiji",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040028-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/31y-j1d-5wz
title: Phagocata vivida (Ijima & Kaburaki, 1916)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9x0-zap-yvd
title: Himasthla Dietz, 1909

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3867901_d11
title: Additional file 1: Table S1. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Correction of sequences from tal pseudogenes containing indels in the SMRT sequence. (XLSX 10 kb)
DOI: 10.3535/e8v-azy-p2r
title: Lepidonotus squamatus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qya-fz5-jy5
title: Chaetogaster diaphanus (Gruithuisen, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y5f-h3h-h1a
title: Lepidonotus squamatus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3867901_d15.v1
title: Additional file 5: Table S3. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: References for previously published tal genes and whole genome sequences from Xanthomonas spp. strains used in this study. (XLSX 19 kb)
DOI: 10.3535/3as-jc7-xfk
title: Dugesia afromontana Stocchino & Sluys, 2012

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p1t-a24-zp2
title: Ophelia borealis Quatrefages, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ens-489-3hz
title: Nephtys Cuvier, 1817

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x4c-gr9-f3d
title: Cura pinguis (Weiss, 1909)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3867901_d16.v1
title: Additional file 6: Table S4. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Average nucleotide identity and percentage of alignment between whole genome sequences from 17 X. citri pv. fuscans and X. phaseoli pv. phaseoli strains. BLAST calculation of average nucleotide identity (ANIb) and alignment percentages were estimated using Jspecies (Richter and Rossello-Mora, 2009). (XLSX 15 kb)
DOI: 10.25378/janelia.24239323
title: Manual organelle segmentations (crop69) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of immortalized T-cells (jrc_jurkat-1)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><br><br>- <b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<br><br>- <b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<br><br><b>Annotation description</b>: Dense segmentations of extracellular space in jrc_jurkat-1 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<br><br><b>Annotation ID</b>: crop69<br><br><b>Primary Annotator</b>: COSEM Project Team<br><br><b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<br><br><b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<br><br><b>Annotated voxel size (nm)</b>: 2 x 2 x 2 (x, y, z)<br><br><b>Annotated data dimensions (µm)</b>: 0.8 x 0.8 x 0.8 (x, y, z)<br><br><b>Annotated data offset (nm)</b>: 23307 x 8123 x 16931 (x, y, z)<br><br><b>Classes annotated</b>: extracellular space<br><br><b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_jurkat-1/jrc_jurkat-1.zarr/recon-1/labels/groundtruth/crop69<br><br><b>Source (EM) dataset ID</b>: jrc_jurkat-1<br><br><b>Source (EM) voxel size (nm)</b>: 4 x 4 x 3.44 (x, y, z)<br><br><b>Source (EM) data dimensions (µm)</b>: 40 x 12 x 29.45 (x, y, z)<br><br><b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.13114259<br><br><b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_jurkat-1<br><br><b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<br><br><b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<br><br><b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.