cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26188/20422113.v1
title: Data repository for "Convergent redeployment of ancestral programs during the evolution of mammalian flight membranes"

description: This repository contains data files and code related to the publication tentatively titled "Convergent redeployment of ancestral programs during the evolution of mammalian flight membranes" by Feigin et al. of the Mallarino Lab at Princeton. <br> 1) <strong>PetGlider_PUasm1.0_preNCBI.fasta.gz:</strong> Draft genome assembly of the pet-trade glider, an Australasian marsupial commonly referred to as the sugar glider and historically classified as <em>Petaurus breviceps</em> (though the currently taxonomy is disputed). <br> 2) <strong>PetGlider_PUasm1.0_gene_annotations.gff.gz:</strong> Gene annotations for the glider assembly generated using the Maker2 pipeline. <br> 3) <strong>Ajam_vs_Cper_d4.gff.gz:</strong> Gene annotations for Seba's short-tailed bat (<em>Carollia perspicillata</em>). These annotations were generated by lifting over gene models from the related Jamaican fruit bat (<em>Artibeus jamaicensis</em>; WHU_Ajam_v2 available on NCBI at https://www.ncbi.nlm.nih.gov/genome/?term=Artibeus+jamaicensis) to the Seba's short-tailed bat assembly produced by DNAZoo (https://www.dnazoo.org/assemblies/Carollia_perspicillata) using the program liftoff. <br> 4) <strong>WGCNA_sample_prep.r:</strong> Code used to prepare sugar glider RNA-Seq read counts for subsequent analysis with WGCNA <br> 5) <strong>pat_network_construction_WGCNA.r:</strong> Code used to perform network construction of sugar glider RNA-Seq read count data across development with WGCNA. <br> 6) <strong>sugar_glider_pat_vs_shd_vs_dors.r:</strong> Code used to perform differential gene expression analyses comparing sugar glider patagium skin RNA-Seq data to that of shoulder and dorsal skin regions. <br> 7) <strong>bat_pat_vs_dors.r:</strong> Code used to perform differential gene expression analyses comparing Seba's short-tailed bat plagiopatagium skin RNA-Seq data to that of dorsal skin. <br> Scripts from this project can also be found at: https://github.com/charlesfeigin/Petaurus-glider-transcriptomics-code
DOI: 10.3886/tkxp-e838
title: Malawi Compact - Infrastructure Development: Final Analysis Report
DOI: 10.3886/8h7f-xg97
title: Malawi Compact - Infrastructure Development: Final Analysis Report
DOI: 10.5281/zenodo.7574530
title: Diversity of lichenized fungi in the Argentinean, Brazilian and Uruguayan pampas

description: A review of the literature on the occurrence of species of lichenized fungi (lichens) in the Pampa biome, which encompasses part of Brazil, Argentina, and Uruguay.a review of the literature on the occurrence of species of lichenized fungi (lichens) in the Pampa biome, which encompasses part of Brazil, Argentina, and Uruguay.
DOI: 10.5281/zenodo.7574529
title: Diversity of lichenized fungi in the Argentinean, Brazilian and Uruguayan pampas

description: A review of the literature on the occurrence of species of lichenized fungi (lichens) in the Pampa biome, which encompasses part of Brazil, Argentina, and Uruguay.a review of the literature on the occurrence of species of lichenized fungi (lichens) in the Pampa biome, which encompasses part of Brazil, Argentina, and Uruguay.
DOI: 10.6084/m9.figshare.21965078
title: GitHub Actions Project Pull Requests

description: Pull Request Data of projects adopting GitHub Action. For the period of 12 months around the adoption date.
DOI: 10.6084/m9.figshare.21965078.v1
title: GitHub Actions Project Pull Requests

description: Pull Request Data of projects adopting GitHub Action. For the period of 12 months around the adoption date.
DOI: 10.5517/ccdc.csd.cc2bz36n
title: CCDC 2173881: Experimental Crystal Structure Determination

description: Related Article: Kai-Cheng Zhong, Jyh-Chien Chen, Shih-Wei Lee, Hsin-Chung Wu|2022|ACSAppl.Polym.Mater.|5|602|doi:10.1021/acsapm.2c01685
description: Related Article: Kai-Cheng Zhong, Jyh-Chien Chen*|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bz3fw
title: CCDC 2173888: Experimental Crystal Structure Determination

description: Related Article: Kai-Cheng Zhong, Jyh-Chien Chen, Shih-Wei Lee, Hsin-Chung Wu|2022|ACSAppl.Polym.Mater.|5|602|doi:10.1021/acsapm.2c01685
description: Related Article: Kai-Cheng Zhong, Jyh-Chien Chen*|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ch4pq
title: CCDC 2189303: Experimental Crystal Structure Determination

description: Related Article: Ben-Hong Chen, Shuai-Jiang Liu, Qian Zhao, Qiumeng Hou, Jia-Li Yuan, Gu Zhan, Qian-Qian Yang, Wei Huang|2023|Chem.Commun.|59|1233|doi:10.1039/D2CC06621A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/eccc03cbe7d6f78f2f468a501e2d6a3f
title: Temperature and concentration of dissolved oxygen in river water measured in the Upper Clark Fork River (Montana, USA) during 2020 and 2021

description: The LTREB (Long Term Research in Environmental Biology) monitoring project is a portion of the $200 million-dollar (USD) superfund project for ecological restoration of the Upper Clark Fork River (UCFR), associated tributaries, and head water streams including Silver Bow and Warm Springs Creeks. Restoration along the Upper Clark Fork River includes removal of metal-laden floodplain soils, lowering of the floodplain to its original elevation, and re-vegetation of over 70 km of the river's floodplain closest to contaminant sources. The UCFR Long Term Research in Environmental Biology (LTREB) project includes bi-weekly water quality monitoring across a 200-km gradient of heavy metal contamination associated with historic mining. Monitoring includes inorganic phosphorus and nitrogen concentrations, biotic standing stocks, and dissolved and whole-water heavy metal concentrations. The UCFR LTREB monitoring project is conducted within the first 200km of the UCFR and associated tributaries located in western Montana. The monitoring program began in 2017 and will be completed in the year 2023 with potential for funding extension. Surface water samples represented in this data product are collected from six sites on the mainstem of the UCFR. River water is measured at each monitoring site using miniDOT Loggers. Dissolved oxygen (DO) and Temperature (T) are recorded by the sensor at five-, 10-, or 15-minute intervals, then interpolated as needed to five-minute intervals in the ...VOR.csv files. DO concentrations are reported in mg/L, and temperature is reported in degrees Celsius. The analysis-ready data of this dataset represent Quality Assurance and Quality Control (QAQC) processed DO concentrations from six sites on the mainstem of the UCFR collected in 2020 and 2021.
DOI: 10.5281/zenodo.7542485
title: ALOS-2 deformation analysis results, Teller 47, Seward Peninsula

description: ALOS-2 deformation analysis results from the Seward Peninsula ALOS-2 stripmap observations from<br> 2015-07-16<br> 2016-07-14<br> 2017-07-13<br> 2019-07-11 Estimates of the line-of-sight deformation velocity (_fitted_velocity.tif) and the estimated standard error (_fitted_se.tif) were obtained by Short-BAseline Subset (SBAS) processing. Two SBAS interferogram subsets were considered, one encompassing all years (2015-2019, filenames 1519) and one encompassing years 2015-2017 (filenames 1517). The first band of these images contains the line-of-sight velocity in (m/s), the second band the estimated displacement in the middle of the study period, referenced to the beginning of the respective study period. Regions with questionable results (e.g., where closure analyses did not successfully correct unwrapping errors) were delineated manually in two geopackage files.
DOI: 10.5281/zenodo.7542484
title: ALOS-2 deformation analysis results, Teller 47, Seward Peninsula

description: ALOS-2 deformation analysis results from the Seward Peninsula ALOS-2 stripmap observations from<br> 2015-07-16<br> 2016-07-14<br> 2017-07-13<br> 2019-07-11 Estimates of the line-of-sight deformation velocity (_fitted_velocity.tif) and the estimated standard error (_fitted_se.tif) were obtained by Short-BAseline Subset (SBAS) processing. Two SBAS interferogram subsets were considered, one encompassing all years (2015-2019, filenames 1519) and one encompassing years 2015-2017 (filenames 1517). The first band of these images contains the line-of-sight velocity in (m/s), the second band the estimated displacement in the middle of the study period, referenced to the beginning of the respective study period. Regions with questionable results (e.g., where closure analyses did not successfully correct unwrapping errors) were delineated manually in two geopackage files.
DOI: 10.5281/zenodo.7574610
title: Ascending Aortic Volume: A Feasible Indicator for Ascending Aortic Aneurysm Elective Surgery?

description: R code for "Ascending Aortic Volume: A Feasible Indicator for Ascending Aortic Aneurysm Elective Surgery?"
DOI: 10.5281/zenodo.7545108
title: Opioid medication use and blood DNA methylation: epigenome-wide association meta-analysis

description: We conducted the first large-scale epigenome-wide meta-analysis of blood DNA methylation and recent use of opioid medications. There were five participating studies (10,842 individuals; 9,886 European ancestry and 956 African ancestry participants) including four that used the newer Illumina EPIC/850K array and one that used the older Illumina 450K array. We identified novel loci differentially methylated in relation to opioid medication use.
description: {"references": ["Lee, Mikyeong et al. (2023) Opioid medication use and blood DNA methylation: epigenome-wide association meta-analysis. Epigenomics. DOI:10.2217/epi-2022-0353"]}
DOI: 10.5281/zenodo.7545107
title: Opioid medication use and blood DNA methylation: epigenome-wide association meta-analysis

description: We conducted the first large-scale epigenome-wide meta-analysis of blood DNA methylation and recent use of opioid medications. There were five participating studies (10,842 individuals; 9,886 European ancestry and 956 African ancestry participants) including four that used the newer Illumina EPIC/850K array and one that used the older Illumina 450K array. We identified novel loci differentially methylated in relation to opioid medication use.
description: {"references": ["Lee, Mikyeong et al. (2023) Opioid medication use and blood DNA methylation: epigenome-wide association meta-analysis. Epigenomics. DOI:10.2217/epi-2022-0353"]}
DOI: 10.21227/f8vk-aj29
title: IEEE-TMI paper, A 2D synthesized image improves the 3D search for foveated visual systems

description: We provide the abstract from the paper below: Current medical imaging increasingly relies on 3D volumetric data making it difficult to thoroughly search all regions of the volume. In some applications (e.g., Digital Breast Tomosynthesis), the volumetric data is typically paired with a synthesized 2D image (2D-S) generated from the corresponding 3D volume. We investigate how this image pairing affects the search for spatially large and small signals. Observers searched for these signals in 3D volumes, 2D-S images, and while viewing both. We hypothesize that lower spatial acuity in the observers’ visual periphery hinders the search for the small signals in the 3D images. However, the inclusion of the 2D-S guides eye movements to suspicious locations, improving the observer’s ability to find the signals in 3D. Behavioral results show that the 2D-S, used as an adjunct to the volumetric data, improves the localization and detection of the small (but not large) signal compared to 3D alone. There is a concomitant reduction in search errors as well. To understand this process at a computational level, we implement a foveated search model (FSM) that executes human eye movements and then processes points in the image with varying spatial detail based on their eccentricity from fixations. The FSM predicts human performance for both signals and captures the reduction in search errors when the 2D-S supplements the 3D search. Our experimental and modeling results delineate the utility of 2D synthesized images in 3D search—limit the reliance on low-resolution peripheral processing by guiding attention to regions of interest, effectively reducing errors.
DOI: 10.25573/data.21422193.v4
title: BHL Optical Character Recognition (OCR) - Full Text Export (new)

description: A full export of the 60+ million pages of OCR content in the Biodiversity Heritage Library.
DOI: 10.5517/ccdc.csd.cc2cpypq
title: CCDC 2195844: Experimental Crystal Structure Determination

description: Related Article: Chandrima Maitra, Prakash D. Jadhav, Debashis Barik, Yeu-Shiuan Ho, Chu-Chun Cheng, Mu-Jeng Cheng, Yun-Wei Chiang, Rai-Shung Liu|2022|Org.Lett.|25|82|doi:10.1021/acs.orglett.2c03884
description: Related Article: Chandrima Maitra|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cpytv
title: CCDC 2195848: Experimental Crystal Structure Determination

description: Related Article: Chandrima Maitra|2022|CSD Communication|||
description: Related Article: Chandrima Maitra, Prakash D. Jadhav, Debashis Barik, Yeu-Shiuan Ho, Chu-Chun Cheng, Mu-Jeng Cheng, Yun-Wei Chiang, Rai-Shung Liu|2022|Org.Lett.|25|82|doi:10.1021/acs.orglett.2c03884
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cpzcf
title: CCDC 2195865: Experimental Crystal Structure Determination

description: Related Article: Chandrima Maitra, Prakash D. Jadhav, Debashis Barik, Yeu-Shiuan Ho, Chu-Chun Cheng, Mu-Jeng Cheng, Yun-Wei Chiang, Rai-Shung Liu|2022|Org.Lett.|25|82|doi:10.1021/acs.orglett.2c03884
description: Related Article: Chandrima Maitra|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cwcxk
title: CCDC 2201059: Experimental Crystal Structure Determination

description: Related Article: Alexandre H. Vincent, Yasmin L. Whyatt, Nicholas F. Chilton, Jeffrey R. Long|2023|J.Am.Chem.Soc.|145|1572|doi:10.1021/jacs.2c08568
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2czrsx
title: CCDC 2204310: Experimental Crystal Structure Determination

description: Related Article: Manman Wang, Wenjun Ye, Nannan Sun, Wenquan Yu, Junbiao Chang|2023|J.Org.Chem.|88|1061|doi:10.1021/acs.joc.2c02509
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2czyp0
title: CCDC 2204493: Experimental Crystal Structure Determination

description: Related Article: Qi Li, Wang Zhang, Chen Zhu, Hong Pan, Kang-Yue Shi, Yicheng Zhang, Man-Yi Han, Choon-Hong Tan|2023|J.Org.Chem.|88|1245|doi:10.1021/acs.joc.2c02487
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d0b4x
title: CCDC 2204848: Experimental Crystal Structure Determination

description: Related Article: Kai-Cheng Zhong, Jyh-Chien Chen, Shih-Wei Lee, Hsin-Chung Wu|2022|ACSAppl.Polym.Mater.|5|602|doi:10.1021/acsapm.2c01685
description: Related Article: Kai-Cheng Zhong, Jyh-Chien Chen*|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d0b5y
title: CCDC 2204849: Experimental Crystal Structure Determination

description: Related Article: Kai-Cheng Zhong, Jyh-Chien Chen, Shih-Wei Lee, Hsin-Chung Wu|2022|ACSAppl.Polym.Mater.|5|602|doi:10.1021/acsapm.2c01685
description: Related Article: Kai-Cheng Zhong, Jyh-Chien Chen*|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d0b6z
title: CCDC 2204850: Experimental Crystal Structure Determination

description: Related Article: Kai-Cheng Zhong, Jyh-Chien Chen, Shih-Wei Lee, Hsin-Chung Wu|2022|ACSAppl.Polym.Mater.|5|602|doi:10.1021/acsapm.2c01685
description: Related Article: Kai-Cheng Zhong|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d5vm2
title: CCDC 2210164: Experimental Crystal Structure Determination

description: Related Article: Jie Mu, Ke Xu, Lei He, Yan Xu, Ti-Jian Yin, Jin-Tao Men, Qiong Ye|2023|Chem.Commun.|59|1209|doi:10.1039/D2CC05823E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7t4m
title: CCDC 2212040: Experimental Crystal Structure Determination

description: Related Article: Zhijin Xu, Xin Dong, Lei Wang, Huajie Wu, Yi Liu, Junhua Luo, Maochun Hong, Lina Li|2023|J.Am.Chem.Soc.|145|1524|doi:10.1021/jacs.2c12300
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d860x
title: CCDC 2212408: Experimental Crystal Structure Determination

description: Related Article: Sheng Zuo, Yuan Tao, Zhigang Liu, Ke Zhang, Luyun Zhang, Yingtang Ning, Fen-Er Chen|2023|Org.Lett.|25|410|doi:10.1021/acs.orglett.2c04113
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d5w2k
title: CCDC 2210178: Experimental Crystal Structure Determination

description: Related Article: Jie Mu, Ke Xu, Lei He, Yan Xu, Ti-Jian Yin, Jin-Tao Men, Qiong Ye|2023|Chem.Commun.|59|1209|doi:10.1039/D2CC05823E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d90mc
title: CCDC 2213202: Experimental Crystal Structure Determination

description: Related Article: Yi-Hua Chen, Jing Yang, Zi-Han Lu, Ke-Hua Zhao, Qi-Ying Xie, Sheng-Jiao Yan|2023|Chem.Commun.|59|1217|doi:10.1039/D2CC06388C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ddbtz
title: CCDC 2216401: Experimental Crystal Structure Determination

description: Related Article: Kou P. Kawahara, Hideto Ito, Kenichiro Itami|2023|Chem.Commun.|59|1157|doi:10.1039/D2CC06706D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ddbv0
title: CCDC 2216402: Experimental Crystal Structure Determination

description: Related Article: Kou P. Kawahara, Hideto Ito, Kenichiro Itami|2023|Chem.Commun.|59|1157|doi:10.1039/D2CC06706D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.