cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0162091.10fu
title: SH0162091.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0162092.10fu
title: SH0162092.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0162093.10fu
title: SH0162093.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0162094.10fu
title: SH0162094.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0162095.10fu
title: SH0162095.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0162096.10fu
title: SH0162096.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.9z34nc
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phragmites australis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000129-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkgyn9
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phragmites karka",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 77 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000130-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rcvxt8
title: Occurrence Download

description: A dataset listing the 108 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Especies de peces introducidas en aguas continentales de México. Catálogo y manuscrito"
 ]
}

 The dataset's 108 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000127-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jx8saj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phuphanochloa speciosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000131-260208012135463/datasets/export for details.
DOI: 10.15468/dl.2qphtb
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phyllostachys aureosulcata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 113 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000132-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7fh3u
title: Occurrence Download

description: A dataset containing 54 records in GBIF matching the query:

 SELECT gbifid, datasetkey, specieskey, kingdom, phylum, class, "order", family, genus, species, scientificname, decimallatitude, decimallongitude, eventdate, institutioncode, "year" AS obs_year, basisofrecord, coordinateuncertaintyinmeters, issue
 FROM occurrence
 WHERE
 decimallatitude IS NOT NULL
 AND decimallongitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateuncertaintyinmeters IS NOT NULL
 AND coordinateuncertaintyinmeters &gt; 0
 AND coordinateuncertaintyinmeters &lt;= 200.0
 AND decimallatitude &gt;= 12.166598047573723
 AND decimallatitude &lt;= 16.25916876999866
 AND decimallongitude &gt;= 15.178002114302874
 AND decimallongitude &lt;= 20.464951930498312
 AND GBIF_Within('POLYGON ((20.464952 12.166598, 20.464952 16.259169, 15.178002 16.259169, 15.178002 12.166598, 20.464952 12.166598))', decimallatitude, decimallongitude) = TRUE
 

 The dataset's 54 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000128-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tyz2z9
title: Occurrence Download

description: A dataset containing 436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phyllostachys edulis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 436 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000133-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zj9t37
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinga marginata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000135-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsvke4
title: Occurrence Download

description: A dataset containing 3446 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phrynosoma orbiculare"
 ]
}

 The dataset includes 3446 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000136-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8j88c
title: Occurrence Download

description: A dataset containing 800 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Piptatheropsis pungens",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 800 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000137-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amsufr
title: Occurrence Download

description: A dataset containing 9560 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ctenosaura pectinata"
 ]
}

 The dataset includes 9560 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000138-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31288969
title: ALAN dataset

description: The dataset of our ALAN manuscript.
DOI: 10.6084/m9.figshare.31288969.v1
title: ALAN dataset

description: The dataset of our ALAN manuscript.
DOI: 10.15468/dl.gup95q
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Piresiella strephioides",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000139-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ujsud
title: Occurrence Download

description: A dataset containing 236 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Barisia ciliaris"
 ]
}

 The dataset includes 236 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000140-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qz2s8f
title: Occurrence Download

description: A dataset containing 62 records in GBIF matching the query:

 SELECT gbifid, datasetkey, specieskey, kingdom, phylum, class, "order", family, genus, species, scientificname, decimallatitude, decimallongitude, eventdate, institutioncode, "year" AS obs_year, basisofrecord, coordinateuncertaintyinmeters, issue
 FROM occurrence
 WHERE
 decimallatitude IS NOT NULL
 AND decimallongitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateuncertaintyinmeters IS NOT NULL
 AND coordinateuncertaintyinmeters &gt; 0
 AND coordinateuncertaintyinmeters &lt;= 200.0
 AND decimallatitude &gt;= 12.166598047573723
 AND decimallatitude &lt;= 16.25916876999866
 AND decimallongitude &gt;= 20.23733615240383
 AND decimallongitude &lt;= 25.58118991312289
 AND GBIF_Within('POLYGON ((25.581190 12.166598, 25.581190 16.259169, 20.237336 16.259169, 20.237336 12.166598, 25.581190 12.166598))', decimallatitude, decimallongitude) = TRUE
 

 The dataset's 62 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000134-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89e575
title: Occurrence Download

description: A dataset containing 1439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pleioblastus argenteostriatus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1439 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000141-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9damdn
title: Occurrence Download

description: A dataset containing 2942 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pituophis deppei"
 ]
}

 The dataset includes 2942 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000142-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30229084.v1
title: Data and R codes.

description: <b>Aim:</b> Marine fish are increasingly threatened by global warming, yet the environmental driving factors for the fish biodiversity in the coast are unclear. Meanwhile, the lack of clarity regarding the responsive traits of coastal fish to environmental conditions has become a key barrier to deciphering the intricate biodiversity-environment relationships in coastal seas. This study aimed to disentangle the direct and indirect effects of environmental factors on fish communities in coastal China Seas, and identify the specific fish traits responsive to these environmental drivers.<b>Location: </b>China.<b>Methods: </b>Piecewise structural equation modeling was applied to determine the direct and indirect effects of environmental factors on fish communities in coastal China Seas, and fourth-corner combined with RLQ analysis was performed to identify fish responsive traits to environmental drivers.<b>Results: </b>The direct and indirect effects of temperature on fish species richness were contrary. The direct effect was negative (standardized coefficient: -0.29), which was associated with the adverse temporal impacts of global warming on biodiversity; the indirect effect was positive (value: 0.72), which explained the spatially higher biodiversity observed in warmer seas. Salinity, water depth, and seafloor substrate were confirmed as important drivers of fish communities, with effects linked to fish physiology (salinity), habitat availability (water depth, seafloor substrate), and feeding activities (seafloor substrate). Four key traits were identified as responsive to the environmental drivers: generation time, caudal peduncle throttling, pectoral fin size, and food consumption to biomass ratio. The Bohai Sea and Yellow Sea were associated with fish having longer generation time, smaller caudal peduncle throttling, smaller pectoral fin size, and lower food consumption to biomass ratio; the East China Sea showed intermediate trait characteristics; and the South China Sea exhibited trait patterns opposite to those of the Bohai Sea and Yellow Sea.
DOI: 10.15468/dl.y3wj36
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pleioblastus distichus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 14 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000144-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5tx35m11
title: MassIVE MSV000100757 - Comparative global label free proteomic analysis of empty vector and CsGPX4 overexpressing Citrus sinensis plants
title: Global label-free proteomic analysis was performed on Citrus sinensis leaves from empty vector (EV) control plants and CsGPX4-overexpressing (OX) plants. Three biological replicates were analyzed per condition (EV1 to 3 and OX1 to 3). Proteins were extracted from leaf tissue, digested with trypsin, and analyzed by LC MS/MS using an Orbitrap Exploris 240 mass spectrometer. Label-free quantification was performed to identify differentially expressed proteins between EV and CsGPX4 OX plants.
DOI: 10.15468/dl.fkmk39
title: Occurrence Download

description: A dataset containing 82479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Potentilla erecta, Potentilla erecta, Potentilla erecta, Potentilla erecta, Potentilla erecta, Potentilla erecta, Potentilla erecta, Potentilla erecta, Tormentilla erecta, Tormentilla erecta, Potentilla tormentilla, Potentilla tormentilla, Potentilla tormentilla, Potentilla tormentilla, Potentilla tormentilla, Potentilla tormentilla, Potentilla sylvestris, Potentilla sylvestris)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 82479 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000124-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18521864
title: Simulation and analysis data for "Quantifying the dominant drivers of the urban dry island across major urban agglomerations in East China"
DOI: 10.5281/zenodo.18521865
title: Simulation and analysis data for "Quantifying the dominant drivers of the urban dry island across major urban agglomerations in East China"
DOI: 10.6084/m9.figshare.30229084
title: Data and R codes.

description: <b>Aim:</b> Marine fish are increasingly threatened by global warming, yet the environmental driving factors for the fish biodiversity in the coast are unclear. Meanwhile, the lack of clarity regarding the responsive traits of coastal fish to environmental conditions has become a key barrier to deciphering the intricate biodiversity-environment relationships in coastal seas. This study aimed to disentangle the direct and indirect effects of environmental factors on fish communities in coastal China Seas, and identify the specific fish traits responsive to these environmental drivers.<b>Location: </b>China.<b>Methods: </b>Piecewise structural equation modeling was applied to determine the direct and indirect effects of environmental factors on fish communities in coastal China Seas, and fourth-corner combined with RLQ analysis was performed to identify fish responsive traits to environmental drivers.<b>Results: </b>The direct and indirect effects of temperature on fish species richness were contrary. The direct effect was negative (standardized coefficient: -0.29), which was associated with the adverse temporal impacts of global warming on biodiversity; the indirect effect was positive (value: 0.72), which explained the spatially higher biodiversity observed in warmer seas. Salinity, water depth, and seafloor substrate were confirmed as important drivers of fish communities, with effects linked to fish physiology (salinity), habitat availability (water depth, seafloor substrate), and feeding activities (seafloor substrate). Four key traits were identified as responsive to the environmental drivers: generation time, caudal peduncle throttling, pectoral fin size, and food consumption to biomass ratio. The Bohai Sea and Yellow Sea were associated with fish having longer generation time, smaller caudal peduncle throttling, smaller pectoral fin size, and lower food consumption to biomass ratio; the East China Sea showed intermediate trait characteristics; and the South China Sea exhibited trait patterns opposite to those of the Bohai Sea and Yellow Sea.