cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25192793.v1
title: Dynamic Causal Modelling of Face Processing with fMRI and M/EEG

description: This dataset consists of BIDS-formatted fMRI and M/EEG data from Wakeman & Henson (2015) that have been processed for DCM analysis. Multimodal data from fMRI, EEG, MEG magnetometers and MEG planar gradiometers from all 16 subjects have been processed with the analysis pipeline presented in Henson et al (2019). This dataset was prepared for demonstration of group-level estimation and inference of DCMs from fMRI and M/EEG data. The raw data can be found here: https://openneuro.org/datasets/ds000117fMRI data is provided in two formats:<i>fMRI_ProcessedData_Individual_Runs.tar.xz</i> contains processed data per run per participant, about 8.9GB total. <i>fMRI_DCMreadyData_VOI_TimeCourses.tar</i> contains VOI time courses for 3 regions - bilateral EVC, and left and right FFA, obtained after reparametrizing and concatenating processed data per run. This totals up to about 440MB.M/EEG data consists of averaged evoked sensor data for two conditions - faces and scrambled faces. Individual subjects' T1 images were used for creating head models. Forward models (leadfields) for all subjects are included in the dataset, which is provided in two formats:MEEG_DCMreadyData_with_GainMatrix.tar.xz consists of sensor data and leadfields - sufficient for inverting MEG, but not EEG data since forward models for the latter need BEM surfaces. This is compact, about 390MB.MEEG_DCMreadyData_with_GainMatrix_BEM.tar.xz consists of sensor data, leadfields and BEM surfaces - can be used for inverting either MEG or EEG data. This is considerably larger in size, about 2.5GB.All four data packages listed above have corresponding file lists for inspection, as well as SHA256 and MD5 checksums for verification of data integrity. Note that the data are highly compressed and will expand to about twice their size on decompression. Please use 7zip on Windows or `tar -xvf filename` on Linux to extract. Scripts used to produce this dataset from the raw data, as well as as scripts demonstrating group DCM analysis can be found here: https://github.com/pranaysy/MultimodalDCM.For more information or queries, please get in touch, or open an issue on the GitHub repository linked above.
DOI: 10.3535/glx-kpd-f5s
title: Linochitina odiosa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k59-l0b-9fc
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zb4-lxf-8lk
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16673998.v1
title: Bibliometric Analysis

description: To define the relevant publication sample, we used these keywords to perform several queries on the WoS engine. The search also con?siders the year of publication, the title, the abstract, and the author/indexed keywords of the articles. We performed the search on 10th March 2021 in the WoS database with the combination of some keywords.<br>Fourth Industrial Revolution OR Industry 4.0 OR Mechanic* OR Real-Time) AND (Artificial Intelligence OR Machine Learning OR Deep Learning OR Artificial Neutral Network) AND (Predictive maintenance OR Decision making OR Diagnostic OR Prognostic OR Monitoring) AND (Time span: 2000-2021) <br>
DOI: 10.3535/63d-qex-n31
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ka3-v8y-qt0
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19383002.v1
title: A new look at <i>Crocodylopodus meijidei</i>: implications for crocodylomorph locomotion

description: A review of the type material of the crocodylomorph ichnotaxon <i>Crocodylopodus meijidei</i> Fuentes Vidarte and Meijide Calvo, 2001 from the Berriasian of Spain is carried out. The review allows a better characterization of this type ichnotaxon and provides interesting new data on the candidate trackmakers and especially on their locomotion. Three different size classes possibly related to different ontogenetic states or sexual dimorphism of the same small- to medium-sized crocodylomorph trackmaker are distinguished. Morphological differences within the sample such as digital impression lengths might be a consequence of differences in allometric growth, assuming similarities with extant crocodylians. Other differences are a consequence of variation in the morphological quality and mode of preservation across the sample. Some trackway features (intermediate-gauge trackways with high pace angulation, absence of tail, belly or drag marks) indicate the trackmakers, presumed neosuchian crocodylomorphs, were walking in a ‘high-walk’ mode with a semi-erect posture at a moderate speed. The trackmaker may have walked with more erect limb posture and with the center of mass located more anteriorly than occurs in extant species, albeit not as erect as quadrupedal animals such as mammals or other extinct archosaurs including trackmakers of other crocodylomorph ichnotaxa (e.g., <i>Batrachopus</i>).
DOI: 10.6084/m9.figshare.28053983.v1
title: dataset_6

description: E-course 3 ECTS data for visualization
DOI: 10.3535/96w-p89-rfk
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gkf-al5-dfs
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7dk-yj2-33l
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jmr-c7x-xrp
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/252-dlp-bps
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8g1-sv6-7sa
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26045812.v1
title: A comprehensive dataset of Germinomaon MRI/CT with radiomic data

description: This feature dataset included 14 shape descriptors.The intensity featuresincluded simple first-order statistics (360 features), those derived from the gray-level co-occurrence matrix (GLCM, 480 features), gray-level run-length matrix (GLRLM, 320 features), gray-level size-zone matrix (GLSZM, 320 features), neigh-boring gray-tone difference matrix (NGTDM, 100 features), and gray-level dependence matrix (280 features).
DOI: 10.6084/m9.figshare.26088193.v1
title: Source data for Fig 2d

description: Source data for Fig 2d
DOI: 10.3535/8n5-b1j-ct0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nc4-6cj-mc2
title: Ancyrochitina gutnica

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15173181.v3
title: Girardinichthys_multiradiatus.201028.tar.gz

description: Genome assembly and annotation of the Darkedged Splitfin, <i>Girardinichthys multiradiatus.</i>
DOI: 10.6084/m9.figshare.28194983.v1
title: Supplementary table for Astronomical age constraints on the early Cambrian Qingjiang biota

description: Magnetic susceptibility and Metal elements
DOI: 10.3535/20m-djm-258
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m1q-xad-d8l
title: Wollastonite group

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25768860.v1
title: 3D intraoral scans - de novo plaque formation

description: This dataset consists of 3D intraoral scans of upper and lower jaws performed at two time points (baseline and 4 days) using the scanner Trios 4 (3shape). The dataset was used in the the study "3D Method for the Volumetric Evaluation and Visualisation of Dental Plaque" and is available upon request. Please contact the authors of the study or the responsible institution for access to the dataset.
DOI: 10.6084/m9.figshare.9685769.v1
title: Additional file 20: of Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe

description: Table S7. LncRNA identified and known RNA motifs annotated in G. australe. (XLSX 84 kb)
DOI: 10.3535/2yq-wxe-wp9
title: †Eostropheodonta Bancroft, 1949

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1297299.v1
title: Linear and exponential line landscapes

description: Simulated chemotaxis trajectories of model larvae in environments with a ramp of odour intensity fromed from multiple point sources
DOI: 10.3535/645-phc-cne
title: Conochitina sp. sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8kg-3h0-5z9
title: Conochitina subcyatha

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/srk-chv-9qd
title: Ceraurus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23537370.v1
title: Code to arquitecture pattern dataset

description: Dataset used to train a pre trained LLM in code to categorize cloud architecture pattern in infrastructure as code projects
DOI: 10.3535/zhe-hwh-t4e
title: Jõhvilites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j2r-drz-fbx
title: Isotelus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4595473.v3
title: MD Simulations of Lipid A Phosphoethanol Transferase from Neisseria meningitidis (NmEptA) in pure DPPE and mixed PE/PG bilayer

description: MD simulations of a full-length Lipid A phosphoethanolamine transferase from <i>Neisseria meningitidis </i>(<i>Nm</i>EptA, PDB code: 5FGN). NmEptA decorates lipid A with phosphoethanolamine (PEA) by transferring the moiety from phosphoethanolamine (PE) lipids found in the bacterial membrane, resulting with the reduced negative charge of the bacterial surface and increased colistin resistance. The full publication can be found here: <br>doi: 10.1073/pnas.1612927114The uploaded files contain total of 9 independent simulations of <i>Nm</i>EptA embedded in two membrane models - pure DPPE bilayer and mixed PE/PG bilayer. A set of three simulations were carried out in DPPE bilayer ar 298 K and three at 310 K, while another set of triplicates was run in a bilayer containing 80% PE and 20% PG lipids at 298 K. A detailed description of MD setup is uploaded in a separate file and the input files used to run the simulations are also provided (.<i>mdp</i>). All the simulations were carried out using GROMACS 3.3.3 engine in conjunction with GROMOS 54a7 force field. Links to the lipid parameters used in these simulations are given below.<br>The uploaded files contain:* The starting structure of <i>Nm</i>EptA embedded in the DPPE bilayer (NmEptA_DPPE_Zn.gro) and the mixed PE/PG bilayer (NmEptA_PEPG_Zn.gro).* Set of trajectories in DPPE bilayer and the corresponding input <i>mdp</i> files at 298 K (NmEptA_DPPE_run1-3-298K.xtc/mdp) and at 310 K (NmEptA_DPPE_run1-3-310K.xtc/mdp).* Set of trajectories in PE/PG bilayer and the corresponding mdp files run at 298 K (NmEptA_PEPG_run1-3-298K.xtc/mdp).* PPoPE lipid paramteres (<i>PPoPE.itp</i>) and the equilibrated mixed PE/PG bilayer snapshot (80_PPoPE-20_DMPG.pdb).* MD simulation protocol (MD_Setup.pdf)<br><br>
DOI: 10.3535/rp0-3r8-c5j
title: †Murchisonia d'Archiac & Verneuil, 1841

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tlp-95w-n1w
title: Illaenus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19782547.v1
title: AE Tables

description: Table of AE's
DOI: 10.6084/m9.figshare.28169672.v1
title: Wildman's Cave drip hydrology 2014-2017

description: Drip logger dataset from Wildman’s cave at Wombeyan, southeast Australia, 2014-2017. Data is collected every 15 minutes from multiple drip sites.
DOI: 10.6084/m9.figshare.28555706.v1
title: BMC minimal dataset - Data source 2

description: Data source 2
DOI: 10.3535/5gh-mj7-5fd
title: Calymene

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bhv-6cb-mx6
title: †Strophomena Blainville, 1824

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/esb-kvx-dtc
title: Illaenus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/whf-dbb-339
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ehl-4c1-4jh
title: †Endoceras J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/shp-wt1-m8k
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/agy-a92-d5y
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k60-6d9-d92
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28061813.v1
title: Asnicar et al. - Ischia Volcanic Vents raw data

description: Raw data used for statistical analysis and plots in the paper Asnicar et al.
DOI: 10.3535/8d8-nfj-zg6
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zkn-nnk-r29
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/69m-18d-4gf
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l1j-1nc-xt6
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rw7-33t-jw1
title: Isotelus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1572321.v1
title: EXTRACTS FROM FIELD MARGIN WEEDS PROVIDE ECONOMICALLY VIABLE AND ENVIRONMENTALLY BENIGN PEST CONTROL COMPARED TO SYNTHETIC PESTICIDES

description: EXTRACTS from Field margin weeds provide economically viable and environmentally benign pest control compared to synthetic pesticides
DOI: 10.6084/m9.figshare.22139972.v2
title: Lu scRNA-seq Mouse Fetal Liver 2021

description: <br> Dataset published by Lu et al. 2021, which contains single-cell RNA sequencing data of E14.5 whole fetal liver cells. <br> <strong>Citation</strong> Lu, Y., Liu, M., Yang, J. <em>et al.</em> Spatial transcriptome profiling by MERFISH reveals fetal liver hematopoietic stem cell niche architecture. <em>Cell Discov</em> <strong>7</strong>, 47 (2021). https://doi.org/10.1038/s41421-021-00266-1 <strong>Original data link</strong> https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5242402
DOI: 10.3535/ek8-qy4-qk9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xjq-f3b-ta9
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0yx-8xl-8r3
title: †Bellerophon Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f54-g76-lk4
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4788868.v1
title: Sea urchin density data

description: Data for the manuscript "Fear outweighs risk in adult sea urchins: prey size mediates consumptive and non-consumptive effects on top-down controlled marine ecosystems". Data from the sea urchin density surveys at high risk and low risk sites
DOI: 10.3535/w3g-5pf-xnp
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y75-xv7-b9c
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/090-9ly-ll6
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mfm-b16-ky1
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2jk-r10-car
title: Dolomite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nxy-h47-ehk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7504217.v1
title: Simulations.zip

description: Data containing results of the twelve simulation<br>
DOI: 10.3535/3nn-2dl-cbq
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/meb-503-sh2
title: †Endoceras J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14754705.v1
title: Normalized FPKM

description: Normalized FPKM of 42 samples
DOI: 10.6084/m9.figshare.22789820.v1
title: Soil characterization of fire-affected places in Los Güájares wildfire

description: These reports were prepared by INIAV (Portugal) in soils collected in January 2023
DOI: 10.3535/ft2-8l8-cse
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mk8-b9n-zc7
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2tq-17d-x8g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/406-ry0-799
title: Illaenus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/08p-esv-x8w
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zp9-0tp-79z
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.bfkvj7
title: Occurrence Download

description: A dataset containing 11999 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Coenonympha tullia Müller, 1764",
 "TaxonKey is Olethreutes deprecatoria Heinrich, 1926",
 "TaxonKey is Ancylis rhoderana (McDunnough, 1954)"
 ]
 },
 "MediaType is Image"
 ]
}

 The dataset includes 11999 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009734-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/j38-qd3-ne3
title: Lichas

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mkk-k07-wk8
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.2068665.v2
title: Tf values, word frequency values for gathering idf values, and evaluation data of the paper submitted to PLOS ONE, titled "Identifying Topics in Microblogs Using Wikipedia"

description: This data provides the topics identified by our approach BOUN-TI, on the data collected from Twitter while the 2012 U.S.A. presidential debates were holding.The dataset also provides tf values of words in a Wikipedia snapshot, and the values required to gain idf values of words. Word frequency distribution of an interval of Twitter english public stream tweets' is provided.
DOI: 10.6084/m9.figshare.28091447.v1
title: <b>Combining phenomics, metabolomics and genomics provides new insights for deciphering the genetic basis of metabolism in polished rice</b>

description: <b>Background:</b> Metabolomic analysis is now widely used in crop-related research but can be logistically demanding and costly.<b>Results:</b> We describe a relatively inexpensive approach in which metabolomics is combined with hyperspectral imaging (HSI) via machine learning. This approach was used to target important steps in flavonoid and lipid biosynthesis in rice. We extracted 1848 hyperspectral indices and 887 metabolites from polished grains of 533 <i>O. sativa</i> accessions. Hyperspectral indices were linked to metabolites through correlation analysis and modelling. On this basis, a total of 554 metabolites and 1313 hyperspectral indices were identified for use in a genome-wide association study (GWAS). The GWAS revealed 17,509 significant locus-trait associations with 2882 single nucleotide polymorphism (SNPs). Colocalization analysis linked SNPs to corresponding metabolites and hyperspectral indices, and 6415 pairs of metabolites and hyperspectral indices were associated within a linkage disequilibrium (LD) of 300 kb in the <i>O. sativa</i> genome. Transcriptomic assessments linked the colocalized loci to 1761 candidate genes associated with KEGG pathways. In an important validation step, genes encoding a novel flavonoid (<i>LOC_Os09g18450</i>) and a flavonoid/lipid (<i>LOC_Os07g11020</i>)<i> </i>that were targeted by our method were characterized. <i>LOC_Os07g11020 </i>was colocalized on the basis of hyperspectral indices and metabolite data, whereas <i>LOC_Os09g18450</i> was colocalized on the basis of the hyperspectral index ddA42 only. The roles of these genes in metabolism were confirmed by gene editing and overexpression in rice lines, which revealed predicted changes in biochemical profiles.<b>Conclusion:</b> Our findings indicate that hyperspectral imaging combined with machine learning methods could serve as a powerful tool for quickly and inexpensively assessing crop metabolites.
DOI: 10.3535/6yh-kg4-jay
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qac-232-gnx
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15173706.v1
title: Data from: A larval aggregation pheromone as foraging cue for insectivorous birds by Diaz-Siefer et al. Biol. Lett. 20210360. https://doi.org/10.1098/rsbl.2021.0360.

description: Original data from:<br>Díaz-Siefer, P., J. Tapia-Gatica, J. Martínez-Harms J, J. Bergmann & JL Celis-Diez. A larval aggregation pheromone as foraging cue for insectivorous birds. Biol. Lett. 20210360. https://doi.org/10.1098/rsbl.2021.0360.