cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1125186.10fu
title: SH1125186.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1125187.10fu
title: SH1125187.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1125190.10fu
title: SH1125190.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.30340690
title: Genome and annotation information

description: <b>Haplotype-resolved genome of </b><b><i>Pseudotaxus chienii</i></b><b> reveals paclitaxel biosynthesis and lineage divergence</b>
DOI: 10.6084/m9.figshare.30340690.v1
title: Genome and annotation information

description: <b>Haplotype-resolved genome of </b><b><i>Pseudotaxus chienii</i></b><b> reveals paclitaxel biosynthesis and lineage divergence</b>
DOI: 10.15156/bio/sh1125192.10fu
title: SH1125192.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1125194.10fu
title: SH1125194.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.d8tzrb
title: Occurrence Download

description: A dataset containing 412199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Accipitriformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((0 -60,30 -60,30 -30,0 -30,0 -60))"
 ]
}

 The dataset includes 412199 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060967-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17464777
title: Índice Potencial de Ativação Territorial (IPAT)

description: Dataset da pesquisa apresentada no artigo "Índice Potencial de Ativação Territorial (IPAT): Mapeando Sistemas Agroalimentares Localizados (SIALs) na Amazônia"
DOI: 10.5281/zenodo.17464778
title: Índice Potencial de Ativação Territorial (IPAT)

description: Dataset da pesquisa apresentada no artigo "Índice Potencial de Ativação Territorial (IPAT): Mapeando Sistemas Agroalimentares Localizados (SIALs) na Amazônia"
DOI: 10.7910/dvn/k2wpsl
title: Replication Data for: Forecaster (Mis-)Behavior

description: Broer, Tobias, and Kohlhas, Alexandre N., (2024) “Forecaster (Mis-)Behavior.” Review of Economics and Statistics 106:5, 1334–1351.
DOI: 10.5281/zenodo.17464198
title: Gene annotations for greater hornwrack bryozoan (Flustra foliacea)

description: Here we provide the gene annotations for greater hornwrack bryozoan (Flustra foliacea). We provide these for both convenience and because some of the functional annotations of genes/proteins are removed when we prepare these for uploading to ENA. We also provide the FASTA files for the assemblies we have made.

We annotated the genome assemblies using a pre-release version of the EBP-Nor genome annotation pipeline (https://github.com/ebp-nor/GenomeAnnotation). Predicted proteins from Bugulina stolonifera were downloaded from https://datadryad.org/dataset/doi:10.5061/dryad.76hdr7t3f and miniprot (Li 2023) was used to align the proteins to the curated assemblies. UniProtKB/Swiss-Prot (UniProt Consortium 2023) release 2023_03 in addition to the metazoa part of OrthoDB v11 (Kuznetsov et al. 2023) were also aligned separately to the assemblies. Red (Girgis 2015) was run via redmask (https://github.com/nextgenusfs/redmask) on the assemblies to mask repetitive areas. GALBA (Brůna et al. 2023; Buchfink, Xie, and Huson 2015; Hoff and Stanke 2019; Li 2023; Stanke et al. 2006) was run with the B. stolonifera proteins using the miniprot mode on the masked assemblies. The funannotate-runEVM.py script from Funannotate was used to run EvidenceModeler (Haas et al. 2008) on the alignments of GRCh38 proteins, UniProtKB/Swiss-Prot proteins, vertebrata proteins and the predicted genes from GALBA. The resulting predicted proteins were compared to the protein repeats that Funannotate distributes using DIAMOND blastp and the predicted genes were filtered based on this comparison using AGAT. The filtered proteins were compared to the UniProtKB/Swiss-Prot release 2023_03 using DIAMOND (Buchfink, Xie, and Huson 2015) blastp to find gene names and InterProScan (Jones et al. 2014) was used to discover functional domains. AGATs agat_sp_manage_functional_annotation.pl was used to attach the gene names and functional annotations to the predicted genes. 

List of files provided here and their description:

tzFluFoli1.1.hap1.fa.gz - genome assembly of greater hornwrack bryozoan (hap1)

tzFluFoli1.1.hap1.proteins.fa.gz - predicted proteins greater hornwrack bryozoan (hap1)

tzFluFoli1.1.hap1.gff.gz - genome annotation of greater hornwrack bryozoan (hap1)

 tzFluFoli1.1.hap2.fa.gz - genome assembly of greater hornwrack bryozoan (hap2)

tzFluFoli1.1.hap2.proteins.fa.gz - predicted proteins greater hornwrack bryozoan (hap2)

tzFluFoli1.1.hap2.gff.gz - genome annotation of greater hornwrack bryozoan (hap2)
DOI: 10.15468/dl.kx97p4
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iHerbarium"
 ]
}

 The dataset includes 113 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000446-150512124619364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmyt3m
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum anoglossoides Ames & C.Schweinf."
 ]
}

 The dataset includes 59 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0193176-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gy8b4b
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bursera instabilis Mc Vaugh & Rzed.",
 "Country is Mexico",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 72 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000446-150528172251762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m988fx
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum ariasii Hágsater & Dodson"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0193207-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.goqz99
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myiarchus cinerascens (Lawrence, 1851)",
 "Country is Mexico",
 "HasCoordinate is true",
 "Geometry POLYGON((-99.173583 21.708473,-99.876708 21.585935,-100.931396 20.673905,-100.151367 19.942369,-99.250488 20.529933,-98.931884 21.176728,-99.173583 21.708473))"
 ]
}

 The dataset includes 36 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000446-150827100048397/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4s2v7c
title: Occurrence Download

description: A dataset containing 261034 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Hepatica nobilis Schreb., Hepatica nobilis Garsault, Ononis natrix L.)"
 ]
}

 The dataset includes 261034 records from 777 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0193230-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.908tsl
title: Occurrence Download

description: A dataset containing 454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arum cylindraceum Gasp.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 454 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000446-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ix6d0a
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratozamia miqueliana H.Wendl."
 ]
}

 The dataset includes 35 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000446-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etu5jc
title: Occurrence Download

description: A dataset containing 10830 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perognathus longimembris (Coues, 1875)"
 ]
}

 The dataset includes 10830 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0193202-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1kmsno
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caloplaca cinnabarina",
 {
 "or" : [
 "Country is Uruguay",
 "Country is Argentina"
 ]
 }
 ]
}

 The dataset includes 41 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000446-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxngkx
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum armeniacum Lindl."
 ]
}

 The dataset includes 425 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0193215-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8q8i5
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astatotilapia stappersii (Poll, 1943)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 47 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000446-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.updkmk
title: Occurrence Download

description: A dataset containing 1683680 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Foraminifera"
 ]
}

 The dataset includes 1683680 records from 3945 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0193216-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.va4hmr
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Agathis borneensis Warb.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 61 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005993-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3r2qc
title: Occurrence Download

description: A dataset containing 3281 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zapus trinotatus Rhoads, 1895"
 ]
}

 The dataset includes 3281 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0347241-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111321194
title: Cuneiform Tablet 000227, CUN.000227

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions 000227 ❧ [Text or Publication Number Note:] CUN.000227 ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.
DOI: 10.15468/dl.hr1wv2
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pteropus vampyrus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 217 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063091-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u3kxb3
title: Occurrence Download

description: A dataset containing 4921122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-96.76758 14.46021,-86.74805 11.37665,-84.81445 8.60709,-77.08008 7.21426,-77.60742 2.83771,-79.54102 0.72947,-80.06836 -3.13613,-80.06836 -5.58975,-77.43164 -8.03312,-76.72852 -10.98002,-74.0918 -13.55629,-70.22461 -17.11559,-66.88477 -18.95409,-63.89648 -16.7793,-64.42383 -14.23883,-67.06055 -13.72711,-70.40039 -13.38535,-72.33398 -11.49725,-74.44336 -9.2496,-74.44336 -6.46379,-73.21289 -1.73118,-71.98242 1.78389,-72.1582 4.76695,-73.38867 8.78085,-75.32227 10.34086,-77.43164 9.30164,-79.18945 10.8592,-82.88086 11.03178,-82.35352 14.97026,-86.39648 15.81762,-86.57227 18.00381,-90.9668 18.83767,-94.30664 17.66915,-96.76758 14.46021))",
 "HasCoordinate is true",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 4921122 records from 748 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034274-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxq45m
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ghana",
 "TaxonKey is Aethiomastacembelus praensis Travers, 1992"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005957-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111321197
title: Cuneiform Tablet 000227, CUN.000227

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions 000227 ❧ [Text or Publication Number Note:] CUN.000227 ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.
DOI: 10.15468/dl.j9rfay
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tragopan satyra (Linnaeus, 1758)",
 "Country is India"
 ]
}

 The dataset includes 54 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063076-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6unxr
title: Occurrence Download

description: A dataset containing 9856204 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 9856204 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034276-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmq78v
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psacalium platylepis (B.L.Rob. & Seaton) H.Rob. & Brettell"
 ]
}

 The dataset includes 131 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005662-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9at6g
title: Occurrence Download

description: A dataset containing 291 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carlito syrichta (Linnaeus, 1758)"
 ]
}

 The dataset includes 291 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0347270-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tyuklq
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus krempfii Lecomte",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063082-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.