cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9o6nml1
title: Vegetation and geomorphic surfaces in the Elwha River delta, Washington, after dam removal, derived from 2016 and 2018 aerial imagery and 2007, 2014, and 2018 field surveys

description: Removal of two large dams from the Elwha River, Washington USA, in 2011-2014 released ~20.5 metric tons (Mt) of impounded sediment, ~5.4 Mt of which was deposited in the river delta and estuary. This dataset presents measurements of geomorphic surfaces, vegetation colonization, and plant community development in the Elwha River delta and estuary after dam removal. Geomorphic surfaces and vegetation colonization were estimated from aerial imagery of the delta and estuary in 2016 and 2018. Plant community development was quantified from field plot surveys of pioneer plant communities on new surfaces in 2014 and 2018 and of established delta and estuarine plant communities on older surfaces in 2007, 2014, and 2018. The dataset includes ortho-rectified aerial imagery for the delta and estuary: (1) 20160811_Elwha_delta and (2) 20180719_Elwha_delta. Second, it includes four polygon shapefiles of cover by geomorphic surface types and vegetation types drawn from the 2016 and 2018 aerial imagery: (3) BeachUnits_2016.shp, (4) BeachUnits_2018.shp, (5) VegUnits_2016.shp, and (6) VegUnits_2018.shp. Third, it includes three tabular data files of field plot measurements: (7) plant species richness and cover summed by functional group (woody, forb, graminoid, perennial, annual/biennial, native, introduced) in each plot each year (VegPlot_FunctGrpRichCover_2007-2014-2018.csv), (8) percent cover by plant species visually estimated in each plot each year (VegPlot_SpCover_2007-2014-2018.csv), and (9) edaphic conditions (soil depth, soil surface gravel/cobble, surface age, surface elevation) measured in each plot on new surfaces in the delta and estuary in years during and after dam removal (VegPlot_NewSurfaceEdaphic_2014-2018.csv). Fourth, it includes two point shapefiles of (10) locations of sampled field vegetation plots (VegPlot_Locations_2007-2014-2018.shp) and (11) point locations for a stratified random sample within new surface polygons in the delta and estuary in 2018 (NewSurface_StratRandSample_2018.shp); this stratified random sample was used in an analysis of surface development and dynamics based on U.S. Geological Survey annual digital elevation models of the delta and estuary in 2011-2018. Finally, the dataset includes 11 metadata files (.xml), one for each of the 11 data files.
DOI: 10.5517/ccdc.csd.cc2gz74v
title: CCDC 2293167: Experimental Crystal Structure Determination

description: Related Article: Martin Nieger, Gudrun Silvennoinen, E. L. Alander, Kristiina Wähälä|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24128649
title: Cancer Capacity Assessment in Cameroon Questionnaire

description: Cancer Capacity Assessment in Cameroon Questionnaire
DOI: 10.6084/m9.figshare.24128649.v1
title: Cancer Capacity Assessment in Cameroon Questionnaire

description: Cancer Capacity Assessment in Cameroon Questionnaire
DOI: 10.7924/r45h7qg0d
title: Model Code and Supplemental Figures for: Network Model of Nociceptive Processing in the Superficial Spinal Dorsal Horn Reveals Mechanisms of Hyperalgesia, Allodynia, and Spinal Cord Stimulation

description: The spinal dorsal horn (DH) processes sensory information and plays a key role in transmitting nociception to supraspinal centers. Loss of DH inhibition during neuropathic pain unmasks a pathway from non-nociceptive Aβ-afferent inputs to superficial dorsal horn (SDH) nociceptive-specific (NS) projection neurons, and this change may contribute to hyperalgesia and allodynia. We developed and validated a computational model of SDH neuronal circuitry that linked non-nociceptive Aβ-afferent inputs in lamina II/III to a NS projection neuron in lamina I via a network of excitatory interneurons. The excitatory pathway and the NS projection neuron were in turn gated by inhibitory interneurons with connections based on prior patch clamp recordings. Changing synaptic weights in the computational model to replicate neuropathic pain states unmasked a low-threshold excitatory pathway to NS neurons similar to experimental recordings. Spinal cord stimulation (SCS) is an effective therapy for neuropathic pain, and accumulating experimental evidence indicates that NS neurons in the SDH also respond to SCS.  Accounting for these responses may inform therapeutic improvements, and we quantified responses to SCS in the SDH network model and examined the role of different modes of inhibitory control in modulating NS neuron responses to SCS. We combined the SDH network model with a previously published model of the deep dorsal horn (DDH) and identified optimal stimulation frequencies across different neuropathic pain conditions. Finally, we found that SCS-generated inhibition did not completely suppress model NS activity during simulated pinch inputs, providing an explanation of why SCS does not eliminate acute pain.
DOI: 10.5281/zenodo.8339169
title: The code and data for paper "Reassessing Java Code Readability Models with a Human-Centered Approach"

description: The code and data for paper "Reassessing Java Code Readability Models with a Human-Centered Approach".<br> Please refer to README.md for detailed instructions.
DOI: 10.5281/zenodo.8339168
title: The code and data for paper "Reassessing Java Code Readability Models with a Human-Centered Approach"

description: The code and data for paper "Reassessing Java Code Readability Models with a Human-Centered Approach".<br> Please refer to README.md for detailed instructions.
DOI: 10.25345/c51z4239h
title: MassIVE MSV000092839 - PARG is Essential for Pol-theta-Mediated DNA End-Joining by Removing Repressive Poly-ADP Ribose Marks
title: DNA polymerase theta (Pol-theta)-mediated end-joining (TMEJ) repairs DNA double-strand breaks and confers resistance to genotoxic agents. How Pol-theta is regulated at the molecular level to exert TMEJ remains unknown. We find that Pol-theta interacts with and is PARylated by PARP1 in vitro and in cells. PARP1 recruits Pol-theta to the vicinity of DNA damage via PARylation dependent liquid demixing, however, PARylated Pol-theta (PAR-Pol-theta) cannot perform TMEJ due to its inability to bind DNA. PARG-mediated de-PARylation of Pol-theta reactivates its DNA binding and end-joining activities in vitro. Consistent with this, PARG is essential for TMEJ in cells and the temporal recruitment of PARG to DNA damage corresponds with TMEJ activation and dissipation of PARP1 and PAR. These studies support a two-step spatiotemporal mechanism of TMEJ regulation. First, PARP1 PARylates Pol-theta and facilitates its recruitment to DNA damage sites in an inactivated state. PARG subsequently activates TMEJ by removing repressive PAR marks on Pol-theta.
DOI: 10.15139/s3/r2ga6m
title: Malaria Routine Data Quality Assessment (MRDQA) tool results, round 2, Sierra Leone

description: Data collected from the second use of the Malaria Routine Data Quality Assessment (MRDQA) Tool in Sierra Leone.
DOI: 10.5281/zenodo.8339184
title: [IO Islamic 2501] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1472 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 2501 here with notations and hyperlinks].</strong> 1472 The same. Another modern copy, dated the 5th of Rajab, A.H. 1210 (A.D. 1796, Jan. 15), at Seringapatam; it was written for Tîpû Sulṭân. Bibliotheca Leydeniana. No. 2501, ff. 190, 2 coll., each ll. 11 (on fol. 180<sup>a</sup>, ll. 13; on ff. 180<sup>b</sup>-190<sup>b</sup>, ll. 12); Nasta’lîḳ, mixed with Shikasta; size, 7<sup>3/4</sup> in. by 5<sup>5/8</sup> in.
DOI: 10.5281/zenodo.8339183
title: [IO Islamic 2501] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1472 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 2501 here with notations and hyperlinks].</strong> 1472 The same. Another modern copy, dated the 5th of Rajab, A.H. 1210 (A.D. 1796, Jan. 15), at Seringapatam; it was written for Tîpû Sulṭân. Bibliotheca Leydeniana. No. 2501, ff. 190, 2 coll., each ll. 11 (on fol. 180<sup>a</sup>, ll. 13; on ff. 180<sup>b</sup>-190<sup>b</sup>, ll. 12); Nasta’lîḳ, mixed with Shikasta; size, 7<sup>3/4</sup> in. by 5<sup>5/8</sup> in.
DOI: 10.7910/dvn/aezghv
title: Replication Data for Refugee Networks, Cooperation, and Resource Access

description: Replication Data for Refugee Networks, Cooperation, and Resource Access
DOI: 10.5281/zenodo.8339190
title: [IO Islamic 189] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1473 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 189 here with notations and hyperlinks].</strong> 1473 The same. Another copy, not dated. The poem concludes on fol. 126<sup>a</sup>; ff. 126<sup>b</sup>-127<sup>b</sup> contain some short stories, the first of which is written by the same scribe as the mathnawî, viz. by Lâla Ćaman La’lî, and begins: حكايت آورده اند كه فرمان بر مهتريوسف آمد كه اى يوسف الخ . No. 189, ff. 127, 2 coll., each ll. 12; Nasta’lîḳ, written half on white, half on brown paper; size, 9<sup>1/8</sup> in. by 5<sup>1/2</sup> in.
DOI: 10.5281/zenodo.8339189
title: [IO Islamic 189] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1473 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 189 here with notations and hyperlinks].</strong> 1473 The same. Another copy, not dated. The poem concludes on fol. 126<sup>a</sup>; ff. 126<sup>b</sup>-127<sup>b</sup> contain some short stories, the first of which is written by the same scribe as the mathnawî, viz. by Lâla Ćaman La’lî, and begins: حكايت آورده اند كه فرمان بر مهتريوسف آمد كه اى يوسف الخ . No. 189, ff. 127, 2 coll., each ll. 12; Nasta’lîḳ, written half on white, half on brown paper; size, 9<sup>1/8</sup> in. by 5<sup>1/2</sup> in.
DOI: 10.5281/zenodo.8339193
title: [IO Islamic 263] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1474 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 263 here with notations and hyperlinks].</strong> 1474 The same. No date. The first thirty-eight leaves collated. No. 263, ff. 130, 2 coll., each ll. 15-16; ff. 1, 2, 8-16, and 128-130 supplied by another hand; Nasta’lîḳ; size, 7½ in. by 4 in.
DOI: 10.5281/zenodo.8339192
title: [IO Islamic 263] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1474 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 263 here with notations and hyperlinks].</strong> 1474 The same. No date. The first thirty-eight leaves collated. No. 263, ff. 130, 2 coll., each ll. 15-16; ff. 1, 2, 8-16, and 128-130 supplied by another hand; Nasta’lîḳ; size, 7½ in. by 4 in.
DOI: 10.25345/c5x63bg4f
title: MassIVE MSV000092840 - Toxoplasma protein phosphatase PPKL TurboID MS data
title: Toxoplasma protein phosphatase PPKL TurboID MS data of the paper "The protein phosphatase PPKL is a key regulator of daughter parasite development in Toxoplasma gondii"
DOI: 10.5281/zenodo.8339195
title: [IO Islamic 1894] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1475 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 1894 here with notations and hyperlinks].</strong> 1475 The same. A well-written copy, without date. No. 1894, ff. 143, 2 coll., each ll. 15; clear and distinct Nasta’lîḳ; size, 9½ in. by 5¾ in.
DOI: 10.5281/zenodo.8339194
title: [IO Islamic 1894] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1475 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 1894 here with notations and hyperlinks].</strong> 1475 The same. A well-written copy, without date. No. 1894, ff. 143, 2 coll., each ll. 15; clear and distinct Nasta’lîḳ; size, 9½ in. by 5¾ in.
DOI: 10.5281/zenodo.8339208
title: [IO Islamic 1848] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1476 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 1848 here with notations and hyperlinks].</strong> <br> 1476 The same. No date. No. 1848, ff. 143, 2 coll., each ll. 15; small, but clear Nasta’lîḳ; illuminated frontispiece; all the pages throughout sprinkled with gold; size, 9 in. by 5¾ in.
DOI: 10.5281/zenodo.8339207
title: [IO Islamic 1848] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1476 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 1848 here with notations and hyperlinks].</strong> <br> 1476 The same. No date. No. 1848, ff. 143, 2 coll., each ll. 15; small, but clear Nasta’lîḳ; illuminated frontispiece; all the pages throughout sprinkled with gold; size, 9 in. by 5¾ in.
DOI: 10.5281/zenodo.8339215
title: [IO Islamic 936] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1477 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 936 here with notations and hyperlinks].</strong> 1477 The same. No date. Occasional glosses, both marginal and interlinear. No. 936, ff. 131, 2 coll., each ll. 16; Nasta’lîḳ; many leaves severely injured by the worms; size, 8<sup>7/8</sup> in. by 5<sup>1/8 </sup>in.
DOI: 10.5281/zenodo.8339214
title: [IO Islamic 936] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1477 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 936 here with notations and hyperlinks].</strong> 1477 The same. No date. Occasional glosses, both marginal and interlinear. No. 936, ff. 131, 2 coll., each ll. 16; Nasta’lîḳ; many leaves severely injured by the worms; size, 8<sup>7/8</sup> in. by 5<sup>1/8 </sup>in.
DOI: 10.5281/zenodo.8339217
title: [IO Islamic 448] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1478 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 448 here with notations and hyperlinks].</strong> 1478 The same. Modern copy, without a date. The right order of ff. 7-14 is: 7, 10, 9, 8, 13, 12, 11, 14; and of ff. 182-187: 182, 184, 183, 186, 185, 187. No. 448, ff. 225, 2 coll., each ll. 9; large Nasta’lîḳ; size, 8<sup>7/8</sup> in. by 5<sup>7/8</sup> in.
DOI: 10.5281/zenodo.8339216
title: [IO Islamic 448] نل و دمن

description: <strong>Nal-u-Daman</strong><strong>.</strong> <strong>This manuscript is now IO Islamic 1478 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 448 here with notations and hyperlinks].</strong> 1478 The same. Modern copy, without a date. The right order of ff. 7-14 is: 7, 10, 9, 8, 13, 12, 11, 14; and of ff. 182-187: 182, 184, 183, 186, 185, 187. No. 448, ff. 225, 2 coll., each ll. 9; large Nasta’lîḳ; size, 8<sup>7/8</sup> in. by 5<sup>7/8</sup> in.
DOI: 10.5281/zenodo.8338253
title: NAMD Trajectory of a Palmitoyl Sphingomyelin Bilayer

description: All-atom PSM bilayer simulated in NPT ensemble with NAMD and the CHARMM36 force field from Doktorova et al. 2020 J. Phys. Chem. B. article (DOI 10.1021/acs.jpcb.0c03389). The trajectory represents the last 117 ns used for analysis where the area per lipid is equilibrated (the file has 5874 frames output every 20 ps). The bilayer has 200 lipids total (100 lipids per leaflet) and is hydrated with 45 waters/lipid. The simulation was done at 55C (328.15K) and the trajectory is centered on the bilayer midplane.
description: Attached files include the structure (.psf and .pdb), trajectory (.dcd) and a copy of the NAMD input file with simulation parameters.
description: {"references": ["Doktorova M, K\u00facerka N, Kinnun JJ, Pan J, Marquardt D, Scott HL, Venable RM, Pastor RW, Wassall SR, Katsaras J, Heberle FA. 2020. Molecular structure of sphingomyelin in fluid phase bilayers determined by the joint analysis of small-angle neutron and X-ray scattering data. J. Phys. Chem. B. 124:5186-5200. DOI: 10.1021/acs.jpcb.0c03389"]}
DOI: 10.5281/zenodo.8338252
title: NAMD Trajectory of a Palmitoyl Sphingomyelin Bilayer

description: All-atom PSM bilayer simulated in NPT ensemble with NAMD and the CHARMM36 force field from Doktorova et al. 2020 J. Phys. Chem. B. article (DOI 10.1021/acs.jpcb.0c03389). The trajectory represents the last 117 ns used for analysis where the area per lipid is equilibrated (the file has 5874 frames output every 20 ps). The bilayer has 200 lipids total (100 lipids per leaflet) and is hydrated with 45 waters/lipid. The simulation was done at 55C (328.15K) and the trajectory is centered on the bilayer midplane.
description: Attached files include the structure (.psf and .pdb), trajectory (.dcd) and a copy of the NAMD input file with simulation parameters.
description: {"references": ["Doktorova M, K\u00facerka N, Kinnun JJ, Pan J, Marquardt D, Scott HL, Venable RM, Pastor RW, Wassall SR, Katsaras J, Heberle FA. 2020. Molecular structure of sphingomyelin in fluid phase bilayers determined by the joint analysis of small-angle neutron and X-ray scattering data. J. Phys. Chem. B. 124:5186-5200. DOI: 10.1021/acs.jpcb.0c03389"]}
DOI: 10.5066/p97lzmd9
title: Post-release survival of translocated Eleutherodactylus coqui in Puerto Rico

description: Translocating individuals of Eleutherodactylus frogs to alternative, suitable habitat is an adaptation strategy designed to minimize the impact of projected warming and drying in Puerto Rico. The action increases species persistence by increasing spatial redundancy, but it could also be used to supplement extant populations. We released 34 Eleutherodactylus coqui to determine initial, post-release survival under two treatments ? non-translocated (N = 14), and translocated (N=20) to a different location 0.8 km away, but sharing similar habitat and environmental conditions. We defined ?initial? as the first 17 days post-release, a period where we hypothesized that translocated individuals would have lower survival rates because they transition from known-familiar habitat to novel-unfamiliar habitat. Daily survival rates (DSR) were better explained by a model with constant survival and no treatment effect (DSR = 0.999 � 0.001). The best supported model (AICc ? 2) indicated that temperature where frogs perched when captured (in-situ), negatively influenced daily survival, but the effect was weak (95%CIs overlapped 0). All but one of the frogs recaptured gained weight after 17 days post-release (average gain = 0.28 � 0.13 g), suggesting that transmitter/harness setup did not affect foraging behavior. The average daily distance travelled per individual was 0.76 � 0.22 m, being significantly higher for translocated individuals (1.19 � 0.35 m). Findings suggested that managed translocations have the potential to become a useful conservation tool, but challenges remain before it can be considered an integral part of post-translocation monitoring, particularly those Eleutherodactylus species with lower body mass.
DOI: 10.34740/kaggle/dsv/6460419
title: Balochi Language to English Translation Dataset