cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14029285
title: ROSMAP meQTL Results for Neurons with CpGs

description: This dataset contains methylation quantitative trait loci (meQTL) results for the following study:

"regionalpcs improve discovery of DNA methylation associations with complex traits"

Tiffany Eulalio*1, Min Woo Sun1, Olivier Gevaert1, Michael D. Greicius2, Thomas J. Montine3, Daniel Nachun*‡3, Stephen B. Montgomery*‡1,3

‡ These authors contributed equally as senior authors

* Corresponding authors: Tiffany Eulalio (eulalio@alumn.stanford.edu), Daniel Nachun (dnachun@stanford.edu), Stephen B. Montgomery (smontgom@stanford.edu)

 Author affiliations:

1.     Department of Biomedical Data Science, Stanford University, Stanford, CA

2.     Department of Neurology & Neurological Sciences, Stanford University, Stanford, CA

3.     Department of Pathology, Stanford University, Stanford, CA

 

Dataset description:

This dataset contains QTL results generated from FastQTL, organized by region type (full gene, gene body, preTSS, and promoters) and summary types (averages and regional principal components).

Contents:



Parquet tar files: These compressed archives contain output files in Parquet format from FastQTL, split by chromosome. parquet1 includes chromosomes 1-10, and parquet2 includes chromosomes 11-22.

cis_qtl_summary_stats.csv: Provides summary statistics for each phenotype-variant pair, including effect sizes, p-values, TSS distances, and additional details.

cis_qtl.signif_pairs.csv: Contains the significant QTL results identified by FastQTL.

cis_qtls.time_to_run.txt: Reports the running time for FastQTL analysis.

cis_qtls.cis_qtl.txt.gz: Contains comprehensive results for all cis QTLs.


This dataset is intended to support replication and further exploration of QTL associations across different genomic regions and summary methods.
DOI: 10.15468/dl.axkzmy
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "TaxonKey is Myotis velifer (J.A.Allen, 1890)"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019167-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14029093
title: ROSMAP meQTL Results for Oligodendrocytes with CpGs

description: This dataset contains methylation quantitative trait loci (meQTL) results for the following study:

"regionalpcs improve discovery of DNA methylation associations with complex traits"

Tiffany Eulalio*1, Min Woo Sun1, Olivier Gevaert1, Michael D. Greicius2, Thomas J. Montine3, Daniel Nachun*‡3, Stephen B. Montgomery*‡1,3

‡ These authors contributed equally as senior authors

* Corresponding authors: Tiffany Eulalio (eulalio@alumn.stanford.edu), Daniel Nachun (dnachun@stanford.edu), Stephen B. Montgomery (smontgom@stanford.edu)

 Author affiliations:

1.     Department of Biomedical Data Science, Stanford University, Stanford, CA

2.     Department of Neurology & Neurological Sciences, Stanford University, Stanford, CA

3.     Department of Pathology, Stanford University, Stanford, CA

 

Dataset description:

This dataset contains QTL results generated from FastQTL, organized by region type (full gene, gene body, preTSS, and promoters) and summary types (averages and regional principal components).

Contents:



Parquet tar files: These compressed archives contain output files in Parquet format from FastQTL, split by chromosome. parquet1 includes chromosomes 1-10, and parquet2 includes chromosomes 11-22.

cis_qtl_summary_stats.csv: Provides summary statistics for each phenotype-variant pair, including effect sizes, p-values, TSS distances, and additional details.

cis_qtl.signif_pairs.csv: Contains the significant QTL results identified by FastQTL.

cis_qtls.time_to_run.txt: Reports the running time for FastQTL analysis.

cis_qtls.cis_qtl.txt.gz: Contains comprehensive results for all cis QTLs.


This dataset is intended to support replication and further exploration of QTL associations across different genomic regions and summary methods.
DOI: 10.5281/zenodo.14027961
title: ROSMAP meQTL Results for Astrocytes with CpGs

description: This dataset contains methylation quantitative trait loci (meQTL) results for the following study:

"regionalpcs improve discovery of DNA methylation associations with complex traits"

Tiffany Eulalio*1, Min Woo Sun1, Olivier Gevaert1, Michael D. Greicius2, Thomas J. Montine3, Daniel Nachun*‡3, Stephen B. Montgomery*‡1,3

‡ These authors contributed equally as senior authors

* Corresponding authors: Tiffany Eulalio (eulalio@alumn.stanford.edu), Daniel Nachun (dnachun@stanford.edu), Stephen B. Montgomery (smontgom@stanford.edu)

 Author affiliations:

1.     Department of Biomedical Data Science, Stanford University, Stanford, CA

2.     Department of Neurology & Neurological Sciences, Stanford University, Stanford, CA

3.     Department of Pathology, Stanford University, Stanford, CA

 

Dataset description:

This dataset contains QTL results generated from FastQTL, organized by region type (full gene, gene body, preTSS, and promoters) and summary types (averages and regional principal components).

Contents:



Parquet tar files: These compressed archives contain output files in Parquet format from FastQTL, split by chromosome. parquet1 includes chromosomes 1-10, and parquet2 includes chromosomes 11-22.

cis_qtl_summary_stats.csv: Provides summary statistics for each phenotype-variant pair, including effect sizes, p-values, TSS distances, and additional details.

cis_qtl.signif_pairs.csv: Contains the significant QTL results identified by FastQTL.

cis_qtls.time_to_run.txt: Reports the running time for FastQTL analysis.

cis_qtls.cis_qtl.txt.gz: Contains comprehensive results for all cis QTLs.


This dataset is intended to support replication and further exploration of QTL associations across different genomic regions and summary methods.
DOI: 10.5281/zenodo.14027752
title: ROSMAP meQTL Results for Bulk tissue cells with CpGs

description: This dataset contains methylation quantitative trait loci (meQTL) results for the following study:

"regionalpcs improve discovery of DNA methylation associations with complex traits"

Tiffany Eulalio*1, Min Woo Sun1, Olivier Gevaert1, Michael D. Greicius2, Thomas J. Montine3, Daniel Nachun*‡3, Stephen B. Montgomery*‡1,3

‡ These authors contributed equally as senior authors

* Corresponding authors: Tiffany Eulalio (eulalio@alumn.stanford.edu), Daniel Nachun (dnachun@stanford.edu), Stephen B. Montgomery (smontgom@stanford.edu)

 Author affiliations:

1.     Department of Biomedical Data Science, Stanford University, Stanford, CA

2.     Department of Neurology & Neurological Sciences, Stanford University, Stanford, CA

3.     Department of Pathology, Stanford University, Stanford, CA

 

Dataset description:

This dataset contains QTL results generated from FastQTL, organized by region type (full gene, gene body, preTSS, and promoters) and summary types (averages and regional principal components).

Contents:



Parquet tar files: These compressed archives contain output files in Parquet format from FastQTL, split by chromosome. parquet1 includes chromosomes 1-10, and parquet2 includes chromosomes 11-22.

cis_qtl_summary_stats.csv: Provides summary statistics for each phenotype-variant pair, including effect sizes, p-values, TSS distances, and additional details.

cis_qtl.signif_pairs.csv: Contains the significant QTL results identified by FastQTL.

cis_qtls.time_to_run.txt: Reports the running time for FastQTL analysis.

cis_qtls.cis_qtl.txt.gz: Contains comprehensive results for all cis QTLs.


This dataset is intended to support replication and further exploration of QTL associations across different genomic regions and summary methods.
DOI: 10.15468/dl.wg2nqk
title: Occurrence Download

description: A dataset containing 34529 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Philaenus spumarius (Linnaeus, 1758)",
 "Year 1990-2020"
 ]
}

 The dataset includes 34529 records from 393 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019169-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q9hfp3
title: Occurrence Download

description: A dataset containing 6410 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremanthodium Benth."
 ]
}

 The dataset includes 6410 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014842-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9z6n38
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chusquea sclerophylla Döll"
 ]
}

 The dataset includes 13 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050028-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kaa7mj
title: Occurrence Download

description: A dataset containing 14099 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onychoprion aleuticus (S.F.Baird, 1869)"
 ]
}

 The dataset includes 14099 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057557-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjetg8
title: Occurrence Download

description: A dataset listing the 18066 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((38.85 -4.75, 38.8 -4.65, 38.75 -4.85, 38.55 -4.65, 38.35 -4.7, 38.15 -4.45, 38.25 -4.2, 37.95 -4, 38.25 -3.85, 38.1 -3.35, 37.9 -3.4, 37.35 -3.05, 36.7 -3.25, 36.45 -2.7, 36.45 -2.35, 36.75 -2, 36.6 -0.3, 37.3 -0.2, 37.45 0.05, 38.25 0.5, 39.65 -0.2, 39.9 -0.85, 40.1 -1, 40.05 -1.3, 40.6 -2.5, 40.2 -2.7, 40.15 -3.3, 39.95 -3.4, 39.55 -4.45, 39.2 -4.7, 39.2 -5, 38.85 -4.75))",
 "HasCoordinate is true",
 "Year is greater than or equal to 1960",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 18066 records were derived from 394 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050089-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nj5lmg
title: Occurrence Download

description: A dataset containing 887 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Araucaria angustifolia (Bertol.) Kuntze"
 ]
}

 The dataset includes 887 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026055-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t94wms
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Monachus monachus (Hermann, 1779)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 39 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003904-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnfcd8
title: Occurrence Download

description: A dataset containing 4251 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Bursera simaruba (L.) Sarg.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4251 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018363-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xt4jsg
title: Occurrence Download

description: A dataset containing 1390 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cucurbita maxima Duchesne"
 ]
}

 The dataset includes 1390 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005219-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6z7nda
title: Occurrence Download

description: A dataset listing the 2112 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Timor-Leste",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 2112 records were derived from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004849-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7pz4hq
title: Occurrence Download

description: A dataset containing 380 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Inga gracilifolia Ducke"
 ]
}

 The dataset includes 380 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0337043-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9aqfy3
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alouatta palliata aequatorialis (Festa, 1903)"
 ]
}

 The dataset includes 137 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007603-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhbw3b
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Allium rouyi Gaut."
 ]
}

 The dataset includes 58 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032631-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e92m48
title: Occurrence Download

description: A dataset containing 11062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trillium pusillum var. pusillum, Cirsium wrightii A.Gray, Ligusticum canadense (L.) Britton, Ligusticum scoticum L., Physalis walteri Nutt.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11062 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080620-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sjpnpd
title: Occurrence Download

description: A dataset containing 68453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "DatasetKey is AM: Freshwater Invertebrates (1900-2005)",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 68453 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003504-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfp5qg
title: Occurrence Download

description: A dataset containing 483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Loxodonta cyclotis (Matschie, 1900)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 483 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034767-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3mpu8
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "MediaType is Image",
 "HasCoordinate is true",
 "TaxonKey is Epidendrum fulgens Brongn.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 29 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081569-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fdkxzg
title: Occurrence Download

description: A dataset containing 5124 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Sweden",
 "Country is Finland",
 "Country is Norway"
 ]
 },
 "Year 1990-2018",
 "HasCoordinate is true",
 "TaxonKey is Trifolium campestre Schreb.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5124 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003504-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfp9fa
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Inga cocleensis Pittier"
 ]
}

 The dataset includes 296 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0337035-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yohguk
title: Occurrence Download

description: A dataset containing 285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 37.5356352737689",
 "DecimalLatitude is less than 38.0806728577121",
 "DecimalLongitude is greater than -122.817174217042",
 "DecimalLongitude is less than -122.129114621727"
 ]
}

 The dataset includes 285 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005220-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k87zfq
title: Occurrence Download

description: A dataset containing 472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Elgaria kingii Gray, 1838"
 ]
}

 The dataset includes 472 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003504-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhw8gj
title: Occurrence Download

description: A dataset containing 700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vindula erota (Fabricius, 1793)"
 ]
}

 The dataset includes 700 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196726-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukfokr
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true",
 "TaxonKey is Alosa saposchnikowii (Grimm, 1887)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005220-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6cgve
title: Occurrence Download

description: A dataset containing 1373 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Geometry POLYGON((-169.10156 70.14036,-168.39844 67.06743,-169.10156 59.17593,-173.32031 54.16243,-123.39844 17.97873,-77.69531 -28.92163,-87.77481 -60.35224,-36.68894 -56.97397,-37.61778 -39.24118,-30.1871 -17.37524,-37.61778 18.25951,-49.69262 45.41349,-36.91406 51.61802,-33.05072 65.16474,-9.87229 71.19014,-2.46094 83.59903,-66.44531 84.40594,-127.61719 81.09321,-149.41406 75.84517,-169.10156 70.14036))",
 "HasGeospatialIssue is false",
 "TaxonKey is Wimmeria Schltdl. & Cham.",
 "Year 1980-2021"
 ]
}

 The dataset includes 1373 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196261-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5trfby
title: Occurrence Download

description: A dataset containing 794 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynophalla verrucosa (Jacq.) J.Presl"
 ]
}

 The dataset includes 794 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005220-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1runqs
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-67.78564 16.59408,-63.35596 16.59408,-63.35596 19.60119,-67.78564 19.60119,-67.78564 16.59408))",
 "TaxonKey is Gecarcinus ruricola (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028888-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smzyce
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphaeronycteris toxophyllum Peters, 1882"
 ]
}

 The dataset includes 232 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031008-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vu3s3h
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.86816 26.5728,-72.6416 23.70891,-72.43066 38.23128,-93.66504 38.23128,-89.86816 26.5728))",
 "HasCoordinate is true",
 "TaxonKey is Myotis septentrionalis (Trouessart, 1897)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 74 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015833-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.