cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5285/cbeab8b9-31ed-4fb2-946d-cf8e77f30fe7
title: Carbon dioxide and methane fluxes with associated environmental observations from a plantation forest to bog restoration site, Lonielist, Forsinard Flows RSPB Reserve, Scotland, 2014-2022

description: This dataset contains measurements of greenhouse gas exchange (carbon dioxide and methane) over a site restored from plantation forest to peat in 2003/2004, in the Flow Country, Caithness and Sutherland. It contains eddy-covariance and associated meteorological and pedological measurements from 2014-07-08 14:30 to 2022-12-31 at half-hourly intervals. The carbon dioxide time series has been gap-filled to allow the calculation of annual budgets for carbon exchange.

The site reference is UK-LNS ( http://www.europe-fluxdata.eu/home/sites-list ).

description: The site was first installed in June 2014 by the James Hutton Institute on a square lattice mast. The instrumentation was removed in early 2018 to allow reprofiling and other further restoration work on the site and reinstalled in later in 2018. It is currently managed by the James Hutton Institute (Aberdeen) as part of the SCO2FLUX network with supporting funding from NERC (Mothership Project) and SRES (CentrePeat project). The University of the Highlands and Islands and the RSPB (Royal Society for the Protection of Birds) continue to support maintenance of the site as local site operators.

The tower sits on a felled conifer plantation which was rewetted after the trees were harvested in 2003 and there was further reprofiling work and furrow blocking in 2018. Some brash is still visible but the surface is quite level and peatland vegetation has returned to the footprint. Small areas that do not appear to have been forested lie to the north-west and south-east of the tower and have pool systems. The pools are 60 m (north-west) and 90 m (south-east) approximately.

Measurements are made using standard instrumentation, retrieved remotely at regular intervals and processed using protocols similar to those defined by the FluxNet and Integrated Carbon Observation Systems (ICOS) projects.
DOI: 10.5285/f4ff680b-9cd0-49d2-b156-c5c4e28dd5e7
title: Hourly automated weather station (AWS) data from Climoor fieldsite in Clocaenog Forest

description: This dataset contains hourly automated weather station (AWS) data from the Climoor field site in Clocaenog forest, NE Wales. It runs from 10/6/2008 until 31/12/2013, and contains air temperature, rainfall, net radiation, solar radiation, photosynthetically active radiation (PAR), wind speed and direction. The dataset has been quality checked, and incorrect or missing values removed, data has not been infilled. 
description: Data was transferred from loggers at the field site onto CEH Bangor's server via a remote telemetry system. Each morning, the previous days data was transferred via telemetry. An automated script transferred the data into the project shared area of the shared network drive. Data quality checking was done on a regular basis by an experienced member of the team who has worked at the field site and on data from the Clocaenog site for 14 years. Data was visually inspected using basic graphing tools, and erroneous values were removed, taking into account the weather at the site during the period in question. Data processing steps included using a macro to combine data from individual 24 hour periods into larger timed periods, then data was cut/pasted into raw data files. Data here is collated raw data, and has only had erroneous values removed.
DOI: 10.5285/2922a694-fcaf-4046-b490-d80ce33b8ae8
title: Carbon dioxide and methane fluxes with associated environmental observations from a plantation forest to bog restoration site, Talaheel, Forsinard Flows RSPB Reserve, Scotland, 2015-2022

description: This dataset contains measurements of carbon dioxide gas exchange over a site restored from plantation forest to peat in 1997/1998, in the Flow Country, Caithness and Sutherland. It contains eddy-covariance and associated meteorological and pedological measurements from 2015-08-19 11:00 to 2022-12-31 at half-hourly intervals. The carbon dioxide time series has been gap-filled to allow the calculation of annual budgets for carbon exchange.

The site reference is UK-THE ( http://www.europe-fluxdata.eu/home/sites-list )

description: The site was established in 2014 by the University of St Andrews in collaboration with the University of the Highlands and Islands (UHI), James Hutton Institute (JHI), UK Centre for Ecology & Hydrology (UKCEH) and the Royal Society for the Protection Birds. Initially an open-path LI-7500 IRGA was used and subsequently replaced with a custom-built enclosed unit (essentially a LI-7500 open-path instrument enclosed in a box with a fan to sample the air and flow it through the chamber). 

The tower sits on a felled conifer plantation which was rewetted after the trees were harvested in 1997, with further furrow blocking in 2017. A little brash is still visible and although the ploughed furrows and ridges are visible, peatland vegetation has returned to the footprint.

In 2018 JHI and UHI took over site operations and some instruments were replaced or refurbished in 2019 to bring the eddy-covariance measurements back to full operation. Over 2022-2024 the off-grid power system was upgraded with new panels and control system, while the radiation and soil sensors were also replaced. 

Measurements are made using standard instrumentation, retrieved remotely at regular intervals and processed using protocols similar to those defined by the FluxNet and and Integrated Carbon Observation Systems (ICOS) projects.
DOI: 10.5285/54edbdcf-086e-40a7-b2cc-c1e4fcbfbbbc
title: Nitrous oxide fluxes and associated soil measurements from a mixed livestock farm in central Scotland (2012-2013)

description: This data set includes over 500 individual flux measurements of nitrous oxide (N2O) from a mixed livestock farm, carried out in 2012 and 2013 using a high-precision flux chamber method. Measurements of soil properties are also reported for each individual flux measurement.  Soil pH, temperature moisture content, bulk density and  ammonia and nitrate concentrations (extracted via the KCl method) are reported in the data. The data represents arable and grazed fields (cattle and sheep) as well as other sources of N2O from agricultural lands such as barns, manure heaps and silage storage. This data was used to assess farms scale emissions of N2O from a variety of sources over four seasons.
description: Flux measurements were made using a high-precision closed chamber system where air was circulated between the chamber and an Aerodyne quantum cascade laser instrument measuring mixing ratios at 1 Hz.  Fluxes were calculated from the concentration change in each chamber by linear and non-linear regression using the R package HMR which also provided the 95 % confidence interval in dc/dt.  Soil samples were collected and frozen to - 18 ˚C within six hours of collection. Analysis of soils was carried out within 2 months of sampling. NH4+ and NO3- was extracted from the soil samples using 50 ml of 1 M KCl solution for 15 g of soil.  The mixture was filtered using 2.5 µm filter paper (Fisherbrand, Hampton, New Hampshire, USA) and the solution was stored and frozen in 20 ml plastic vials. Concentrations of NH4+ and NO3- were measured using a Bran and Luebbe AutoAnalyser (SPX Flow Technology, Norderstedt, Germany) by the analytical department at the School of Geosciences, University of Edinburgh. A sub sample of the dried soils was taken to be ground (via ball milling) for elemental analysis of total carbon and nitrogen content of the soil (vario EL cube, Elemaentar, Hanau, Germany), also by the analytical department at the School of Geosciences, University of Edinburgh.
DOI: 10.5285/def51d3d-d653-40ca-8231-a238b0c66975
title: Fine root production in human-modified forests of Eastern Amazonia  

description: This dataset includes measurements of soil respiration in 20 plots (250 x 10 m each) in the Brazilian Amazon. Study plots were distributed across a gradient of forest disturbance, including: undisturbed primary forests , logged primary forests, logged-and-burned primary forests, and secondary forests. Data were collected from October 2014 until May 2018. In December 2015, during the El Niño-mediated drought, eight of our study plots were affected by understory fires. 
description: We assessed roots production in 20 study plots (0.25ha) distributed along a gradient of forest disturbance in Eastern Amazonia: undisturbed primary forests (n = 5), logged primary forests (n = 5), logged-and-burned primary forests (n = 5), and secondary forests (n = 5). Forest disturbance classes were based on both an analysis of canopy disturbance in a chronosequence of satellite images (1988 to 2010) and on field assessments of fire scars, charcoal, and logging debris.  

In each plot we installed four in-growth soil cores (12 cm Diameter x 40 cm deep) using a plastic mesh (mesh size = 1.5cm). Each in-growth core was placed 50m apart. Cores were set 30cm deep into the soil, with 10cm aboveground. Before each sampling, both the soil temperature were measured inside and outside the in-growth core. In the field, each soil core was placed on a plastic sheet and broken in smaller parts until was homogenically spread. For the first measurement, called root stock, roots were collected in 24 intervals of five minutes each (three minutes break between intervals). The soil was homogenized before every new interval. After the sampling, the soil was placed back in the hole with the in-growth core inside. The sampled roots were taken to the laboratory and washed in a plastic sieve (2 mm mesh size), oven-dried at 60oC for 72 h and weighed. The second measure is taken 3 months after the first one, which gives us the first stock of fine root production. We collect the soil in the same hole and use the same method to collect the roots, but with 12 intervals of five minutes each (three minutes break between intervals). The laboratory procedure was the same. After three months, we take another measure in the same hole, using the same method as the second measure. After one year, the soil core is taken around 30 cm next to the first one, as the soil becomes physically disturbed and compact, which influences root production. For this new in-growth core, we start the sampling again with 24 intervals.
DOI: 10.15468/dl.h398ak
title: Occurrence Download

description: A dataset containing 22491 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cantharellus cibarius",
 "Year 2020-2025"
 ]
}

 The dataset includes 22491 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031275-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/56a7376ba53a0f0c1eb3211050d00038
title: Characterizing the ecology and soil biogeochemistry of wetland transition zones along the Satilla River Estuary, GA, USA.

description: The location of salinity gradients in coastal wetlands, from tidal freshwater sourced from riverine inputs to polyhaline sourced from saline ocean water, is subject to natural and unnatural shifts due to climactic patterns such as changes in discharge, sea-level rise (SLR), and alterations to hydrology. Increased inundation in of saltwater in the Satilla River has resulted in conversions of plant communities from fresh or brackish to salt tolerant species that has implications for belowground soil biogeochemistry. These data explore the translation of aboveground properties to soil properties in transitional wetlands in poly-, meso-, and oligohaline regions and across elevation gradients from levee to platform in the Satilla River Estuary, GA by characterizing the ecological communities and soil size fractionation, total organic carbon content (TOC) and composition (delta13C).
DOI: 10.57745/v0cno1
title: 2009-EGG-BY-0601–Tarasevich.ogg

description: Enregistrement audio en version originale russe
DOI: 10.57745/yv7z6x
title: Entretien avec Zinaïda Tarasevitch. Histoire de vie et expériences de déportation en URSS

description: Cet entretien a eu lieu le 13 décembre 2009 à Minsk, Biélorussie. Il a été mené par Alain Blum et Nathalie Moine. L'entretien a été réalisé en russe. Il a duré 2 heures et 18 minutes.
DOI: 10.15468/dl.bqhc9h
title: Occurrence Download

description: A dataset containing 10658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Chile, Argentina, Bolivia (Plurinational State of), Peru)",
 "TaxonKey is Adiantum"
 ]
}

 The dataset includes 10658 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031276-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36eypw
title: Occurrence Download

description: A dataset containing 4224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lactarius deliciosus",
 "Year 2020-2025"
 ]
}

 The dataset includes 4224 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031277-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25828/dbky-y636
title: Mortality and Causes of Death 2021-2022
DOI: 10.6073/pasta/8223bb321df914935d387b711b071ee6
title: Elevation and soil salinity transects at Airport Marsh and Old Beach Road on Sapelo Island, Georgia in 2001

description: To examine the relationship between elevation and soil characteristics, I sampled two sites on Sapelo Island (Old Beach Road and Airport Marsh) in July of 2001. At each site, I collected 160 soil samples across a transect from the high to the low marsh, and surveyed the relative elevation of each sample location with a theodolite. I determined soil water content gravimetrically, soil organic content by ashing samples, and soil salinity by rehydrating dried soils, adding deionized water, measuring the salinity of the supernatant, and back calculating to the original soil water content.
DOI: 10.15468/dl.yw59gn
title: Occurrence Download

description: A dataset containing 936 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Natural History Museum (London) Collection Specimens",
 "TaxonKey is Hipposideros ruber"
 ]
}

 The dataset includes 936 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031279-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/ainomn
title: 2009-EGG-BY-0401–Svetlov.ogg

description: Enregistrement audio en version originale russe
DOI: 10.6073/pasta/52bc2973753980ae66084d74745e9ad9
title: Borrichia removal experiment at Dean Creek marsh on Sapelo Island, Georgia between 1995 and 2001

description: To examine the effect of Borrichia on Batis and Sarcocornia sp., I completely clipped all vegetation from six 0.5 x 0.5 m quadrats in a mixed stand of the three species at the Dean Creek marsh in June 1995. Six additional plots were left unmanipulated as controls. Removal and control plots were fully interspersed. I clipped Borrichia from the removal plots every 6 months but allowed other plant species to re-colonize.
DOI: 10.15468/dl.4zmkqq
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Niphidium anocarpos"
 ]
}

 The dataset includes 234 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031280-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r73cnv
title: Occurrence Download

description: A dataset containing 506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (, , , , Phoebe cavaleriei, , , , , , , , Machilus mairei, , , , , , Nothaphoebe cavaleriei, , , , , , , , , , , Lindera cavaleriei, , , , , , , , , , , , , , Notaphoebe omeiensis, Nothaphoebe omeiensis, , , , , , , , , , , Nothaphoebe duclouxii, , , Phoebe tenuirhachis, , Machilus dunnianus, , , , Alseodaphne omeiensis, , Phoebe dunniana, )",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 506 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031281-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/591b7c5c4aa8a8e37159f930c3a6a734
title: Marsh vegetation and soil survey at Marsh Landing, Sapelo Island GA from July 1999.

description: To document edaphic and vegetation patterns in a Georgia marsh, I sampled seven vegetation "zones" at Marsh Landing on Sapelo Island in July, 1999. Vegetation zones were delineated based on vegetation composition. I located 8 transects running from the Juncus zone in the high marsh down into the short S. alterniflora zone. The tall Spartina zone was not sampled. I sampled a single quadrat (0.25 m x 0.25 m) in each vegetation zone along each transect, for a total of 56 plots. I measured canopy height with a meter stick. I harvested aboveground biomass within each quadrat, sorted it to species, dried and weighed it. I measured soil water content gravimetrically by drying surface (4 cm deep) soil cores and expressing results as (water mass)/(mass of wet core). I determined porewater salinity by rehydrating dried soil cores with a known volume of deionized water, measuring the salinity of the supernatant after 48 h, and back-calculating to the volume of water originally present. I measured soil organic content as loss on ignition of dried soil cores at 450oC for 12 h. I measured relative elevation of each vegetation zone with a theodolite, with the elevation of the lowest zone arbitrarily set to zero. The resulting dataset describes how plant species composition, richness, height and biomass varies as a function of abiotic conditions in the upper part of a Georgia marsh.
DOI: 10.57745/blfjao
title: 2009-EGG-KZ-0501-Ozerovskij.ogg

description: Enregistrement audio en version originale russe
DOI: 10.15468/dl.vdwry6
title: Occurrence Download

description: A dataset containing 6047 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Hipposideros caffer"
 ]
}

 The dataset includes 6047 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031282-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/vzooof
title: 2009-EGG-KZ-0503-Ozerovskij.ogg

description: Enregistrement audio en russe avec interprétation en français, interprète/traducteur : Vladimir Poliakov
DOI: 10.57745/wzq55j
title: 2009-EGG-KZ-0502-Ozerovskij.ogg

description: Interprétation en français, interprète/traducteur : Vladimir Poliakov
DOI: 10.57745/xgshk4
title: Entretien avec Andreï Ozerovski. Histoire de vie et expériences de déportation en URSS

description: Cet entretien a eu lieu le 17 septembre 2009 à Karaganda, Kazakhstan, dans l'hôtel de l'équipe de recherche. Il a été mené par Isabelle Ohayon et Elena Zimovina, avec la participation de Alain Blum qui s'occupait de l'enregistrement. L'entretien a été réalisé en russe et traduit et interprété en français. Il a duré 5 heures.
DOI: 10.15468/dl.g8pequ
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Desicasta"
 ]
}

 The dataset includes 84 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005062-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18340724
title: Data and code for Quantitative Expansion Microscopy for In Situ Estimation of Endogenous Target Abundance

description: Here we have the data and the code for our manuscript:Quantitative Expansion Microscopy for In Situ Estimation of Endogenous Target AbundanceIt also lives on https://github.com/LEB-EPFL/qExM_codeThe folder Expansion_method_SNR is the code and data for figure 1.

The folder NPC is the code and data for figure 2

The folder RC is the code and data for figure 3

The folder SC is the code and data for figure 4
DOI: 10.5281/zenodo.18340725
title: Data and code for Quantitative Expansion Microscopy for In Situ Estimation of Endogenous Target Abundance

description: Here we have the data and the code for our manuscript:Quantitative Expansion Microscopy for In Situ Estimation of Endogenous Target AbundanceIt also lives on https://github.com/LEB-EPFL/qExM_codeThe folder Expansion_method_SNR is the code and data for figure 1.

The folder NPC is the code and data for figure 2

The folder RC is the code and data for figure 3

The folder SC is the code and data for figure 4
DOI: 10.17605/osf.io/5avqx
title: Integrating sustainability transition into university curricula : survey data

description: The case studies evaluated how integrating the Sustainable Development Goals (SDGs) into university courses could enhance non-specialist students’ awareness and engagement with sustainability. Conducted in two undergraduate courses — Sociology of Reading and Infometrics — at the University of Lille (2024–2025), the project tested interdisciplinary teaching through problem-based and participatory learning.

Students voluntarily completed anonymous questionnaires on their background, course experience, and views on climate change and the SDGs. Forty-four students participated (22 for the Sociology of reading course and 22 for the Infometrics course).

No personal or identifying data were collected. All datasets are shared under the terms of the Creative Commons Zero (CC0) “No rights reserved” data waiver, ensuring unrestricted reuse and compliance with Open Science principles. No specialized software beyond standard spreadsheet tools (e.g., Microsoft Excel or LibreOffice Calc) is required to access or analyze the data.

The OSF project contains the following files:
1. Feedback data – Sociology of Reading course (in French, as the course was taught in French) in Excel format.
2. Feedback data – Infometrics seminars (in French, as the course was taught in French) in Excel format.
3. Feedback form translated into English, DOCX format.
DOI: 10.6084/m9.figshare.31127071
title: Differentially expression genes in <i>Medicago truncatula</i> nodules

description: Differentially expressed genes that responded to CdCl2 stress in nodules of <i>Medicago truncatula.</i>
DOI: 10.6084/m9.figshare.31127071.v1
title: Differentially expression genes in <i>Medicago truncatula</i> nodules

description: Differentially expressed genes that responded to CdCl2 stress in nodules of <i>Medicago truncatula.</i>