cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9900113.v1
title: Expression of genes related to soil flooding tolerance in soybeans

description: ABSTRACT. The flooded environment brings about injuries to soybeans that vary depending on the adaptation ability of the genotype. Oxygen deprivation promotes the induction of the expression of genes related to glycolysis and fermentation pathways to maintain energy metabolism and, in addition to reducing-power consuming processes, act in the formation of adaptive structures and the maintenance of the redox status of the plant. The aim of this work was to evaluate the relative expression of genes related to soil flooding response in two contrasting soybean cultivars. Soybean plants of the sensitive (BRS 154) and tolerant (I27) cultivars at the V1 development stage were submitted to the flooding and control conditions (without flooding) for 0, 24, 48, and 96 hours. The relative expression of genes associated with flooding, including enolase (ENO), alcohol dehydrogenase 1 (ADH1), alanine aminotransferase 2 (ALAT2), hemoglobin 1 (GLB1), LOB41 domain-containing protein (LBD41), xyloglucan endotransglycosylase (XETP) and ascorbate peroxidase (APX2), was evaluated by means of RT-qPCR. The relative expression, in general, increased with flooding, especially in the root tissue. Cultivar I27 responded positively as observed by the expression of the maintenance genes of energy metabolism, structural changes and detoxification, suggesting the presence of three tolerance mechanisms in the flooding response.
DOI: 10.6084/m9.figshare.7482563
title: Inoculation of soybean seeds coated with osmoprotector in diferents soil pH's

description: ABSTRACT. Inoculation with nitrogen-fixing bacteria (Bradyrhizobium) is an indispensable technology to increase the productivity of the soybean crop. The objective of this study was to evaluate the viability of the inoculation with Bradyrizobium bacteria associated with the osmoprotector coating on different pre-sowing days and the effect of different soil pH on the components of yield, nodulation and grain yield of soybean. Two soybean cultivars were used, sown in two seasons and submitted to soil pH of 5.3 and 6.5. The seeds were inoculated at different pre-sowin periods with Bradyrizobium bacteria in the presence or absence of osmoprotectants. In the cultivar NA 5909RG (pH 5.3), the seeds inoculated with Bradyrhizobium and osmoprotector, at four and seven days of pre-sowing, presented an increase of 10.8% and 8.3% of productivity, in relation to those without osmoprotector. The osmoprotector and the inoculation of Bradyrhizobium increases the number and dry mass of nodules in soil with more acidic pH. The soil of lower acidity is responsible for higher grain yield, compared to the higher acidity, when both were not inoculated. The variable with the greatest explanatory power and contribution in the variability in the data of the experiment is the grain yield.
DOI: 10.6084/m9.figshare.7482563.v1
title: Inoculation of soybean seeds coated with osmoprotector in diferents soil pH's

description: ABSTRACT. Inoculation with nitrogen-fixing bacteria (Bradyrhizobium) is an indispensable technology to increase the productivity of the soybean crop. The objective of this study was to evaluate the viability of the inoculation with Bradyrizobium bacteria associated with the osmoprotector coating on different pre-sowing days and the effect of different soil pH on the components of yield, nodulation and grain yield of soybean. Two soybean cultivars were used, sown in two seasons and submitted to soil pH of 5.3 and 6.5. The seeds were inoculated at different pre-sowin periods with Bradyrizobium bacteria in the presence or absence of osmoprotectants. In the cultivar NA 5909RG (pH 5.3), the seeds inoculated with Bradyrhizobium and osmoprotector, at four and seven days of pre-sowing, presented an increase of 10.8% and 8.3% of productivity, in relation to those without osmoprotector. The osmoprotector and the inoculation of Bradyrhizobium increases the number and dry mass of nodules in soil with more acidic pH. The soil of lower acidity is responsible for higher grain yield, compared to the higher acidity, when both were not inoculated. The variable with the greatest explanatory power and contribution in the variability in the data of the experiment is the grain yield.
DOI: 10.6084/m9.figshare.7482560
title: Inoculation with Azospirillum brasilense on corn yield and yield components in an integrated crop-livestock system

description: ABSTRACT. Inoculation of corn with diazotrophic bacteria reduces the need for nitrogen fertilization and mitigates environmental contamination risks due to the bacteria’s biological nitrogen-fixation capacity. The aim of the present study was to evaluate the effect of corn seed inoculation with Azospirillum brasilense under different nitrogen levels and post-grazing residual heights. The experiment was performed in two growing seasons and conducted in an integrated crop-livestock system for the 2014/15 and 2015/16. A factorial randomized block experimental design with sub-divided plots and three factors. The main plots varied in post-grazing residual height (0.10, 0.20, 0.30 m, continuous grazing, or no grazing), the subplots varied in inoculation (with or without seed inoculation), and the sub-subplots varied in nitrogen level (0, 75, 150, 225, or 300 kg ha-1 of N). The higher post-grazing residual height associated an A. brasilense and nitrogen fertilization resulted in increased corn biomass and production and yield. At the 300 kg dose of N, the highest grain yield was obtained under different post-grazing heights (10.15 Mg ha-1) and in the absence of the bacterium (10.00 Mg ha-1). Azospirillum brasilense helps plant growth and yield but does not replace the effect of N fertilization.
DOI: 10.6084/m9.figshare.7482560.v1
title: Inoculation with Azospirillum brasilense on corn yield and yield components in an integrated crop-livestock system

description: ABSTRACT. Inoculation of corn with diazotrophic bacteria reduces the need for nitrogen fertilization and mitigates environmental contamination risks due to the bacteria’s biological nitrogen-fixation capacity. The aim of the present study was to evaluate the effect of corn seed inoculation with Azospirillum brasilense under different nitrogen levels and post-grazing residual heights. The experiment was performed in two growing seasons and conducted in an integrated crop-livestock system for the 2014/15 and 2015/16. A factorial randomized block experimental design with sub-divided plots and three factors. The main plots varied in post-grazing residual height (0.10, 0.20, 0.30 m, continuous grazing, or no grazing), the subplots varied in inoculation (with or without seed inoculation), and the sub-subplots varied in nitrogen level (0, 75, 150, 225, or 300 kg ha-1 of N). The higher post-grazing residual height associated an A. brasilense and nitrogen fertilization resulted in increased corn biomass and production and yield. At the 300 kg dose of N, the highest grain yield was obtained under different post-grazing heights (10.15 Mg ha-1) and in the absence of the bacterium (10.00 Mg ha-1). Azospirillum brasilense helps plant growth and yield but does not replace the effect of N fertilization.
DOI: 10.6084/m9.figshare.7482905
title: Processing and physical and physiological quality of the native forest seeds of Vernonanthura discolor

description: ABSTRACT. The objective was to study the processing of Vernonanthura discolor seeds, evaluating their physical and physiological qualities and defining parameters for purity analysis and determine the weight of one thousand seeds. The seeds extracted from the infructescences were processed in a blower, testing combinations of openings of the calibration valve and the side air passage. After processing, the seeds went through water content determination, germination tests, first count of the germination test, purity analysis, weight of one thousand seeds and percentage of full seeds. Compared to the control, seeds processed in a regulated blower with the calibrator valve in position 10 plus three 360° turns of side air passage obtained an approximately three-fold increase in germination and vigour and had 96% purity. We conclude that the processing of V. discolor seeds was best done by combining the rubbing of the seeds on circular sieves (1.8 and 1.6 mm in diameter) and then passage in an adjusted seed blower (calibration valve in position 10 plus three 360° turns of side air passage). The weight of one thousand seeds is 0.500 g, and the working sample for purity analysis must be 1.3 g.
DOI: 10.6084/m9.figshare.7482905.v1
title: Processing and physical and physiological quality of the native forest seeds of Vernonanthura discolor

description: ABSTRACT. The objective was to study the processing of Vernonanthura discolor seeds, evaluating their physical and physiological qualities and defining parameters for purity analysis and determine the weight of one thousand seeds. The seeds extracted from the infructescences were processed in a blower, testing combinations of openings of the calibration valve and the side air passage. After processing, the seeds went through water content determination, germination tests, first count of the germination test, purity analysis, weight of one thousand seeds and percentage of full seeds. Compared to the control, seeds processed in a regulated blower with the calibrator valve in position 10 plus three 360° turns of side air passage obtained an approximately three-fold increase in germination and vigour and had 96% purity. We conclude that the processing of V. discolor seeds was best done by combining the rubbing of the seeds on circular sieves (1.8 and 1.6 mm in diameter) and then passage in an adjusted seed blower (calibration valve in position 10 plus three 360° turns of side air passage). The weight of one thousand seeds is 0.500 g, and the working sample for purity analysis must be 1.3 g.
DOI: 10.6084/m9.figshare.7482407
title: Enhancement of the antioxidant capacity and reduction of chilling injury in ‘Douradão’ peaches refrigerated under pre-storage and modified atmosphere

description: ABSTRACT. The present study aimed to investigate the effects of pre-storage for 24h and 48h and different modified atmosphere packaging-MAP treatments (using low-density polyethylene - LDPE) on the antioxidant compounds and the postharvest quality of ‘Douradão’ peaches under cold storage. The peaches were submitted to the following treatments: a control (no packaging or pre-storage) and pre-storage for 24h or 48h at 25ºC combined with passive MAP (LDPE 60 µm or 80 µm). After the application of the treatments, the fruits were stored at 0ºC for 30 days plus 3 days at 25ºC to simulate marketing conditions. The results showed that on the simulated marketing period, all the treatments (except for the control) reduced woolliness and internal browning. Furthermore, both pre-storage and LDPE MAP enhanced the polygalacturonase (PG) activity, the levels of phenolic compounds and the antioxidant capacity. Thus, these results suggest that the pre-storage associated with LDPE packaging increases the shelf life of peaches by up to 30 days under cold storage.
DOI: 10.6084/m9.figshare.7482407.v1
title: Enhancement of the antioxidant capacity and reduction of chilling injury in ‘Douradão’ peaches refrigerated under pre-storage and modified atmosphere

description: ABSTRACT. The present study aimed to investigate the effects of pre-storage for 24h and 48h and different modified atmosphere packaging-MAP treatments (using low-density polyethylene - LDPE) on the antioxidant compounds and the postharvest quality of ‘Douradão’ peaches under cold storage. The peaches were submitted to the following treatments: a control (no packaging or pre-storage) and pre-storage for 24h or 48h at 25ºC combined with passive MAP (LDPE 60 µm or 80 µm). After the application of the treatments, the fruits were stored at 0ºC for 30 days plus 3 days at 25ºC to simulate marketing conditions. The results showed that on the simulated marketing period, all the treatments (except for the control) reduced woolliness and internal browning. Furthermore, both pre-storage and LDPE MAP enhanced the polygalacturonase (PG) activity, the levels of phenolic compounds and the antioxidant capacity. Thus, these results suggest that the pre-storage associated with LDPE packaging increases the shelf life of peaches by up to 30 days under cold storage.
DOI: 10.5281/zenodo.6619138
title: Reference panel and test data for hapCon

description: This dataset contains the reference panel needed to run hapCon and some test data. After unzipping, the folder ./reference contains the reference panel and its associated metadata, and the folder ./data contains two BAM files as test data, which is used in our jupyter notebook tutorial. Please visit our readthedocs site for detailed documentation.
DOI: 10.5281/zenodo.6619137
title: Reference panel and test data for hapCon

description: This dataset contains the reference panel needed to run hapCon and some test data. After unzipping, the folder ./reference contains the reference panel and its associated metadata, and the folder ./data contains two BAM files as test data, which is used in our jupyter notebook tutorial. Please visit our readthedocs site for detailed documentation.
DOI: 10.6084/m9.figshare.7941500
title: Silicon and methyl jasmonate in the vegetative development and genetic stability of rice

description: ABSTRACT. Given the high demand for food worldwide, options for maximizing food production with minimum environmental impact are needed. Therefore, the objective of the present study was to evaluate the effect of silicon (Si) and methyl jasmonate (MeJA) in the vegetative development and genetic stability of rice plants, BRSMG Caravera cultivar. The treatments used were T1 - Control group (without Si and MeJA); T2 - Tween foliar; and T3 - Si drench, T4 - MeJA foliar, and T5 - Si drench + MeJA foliar. The use of Si or Si + MeJA promoted an increase in the height, relative chlorophyll index (RCI), and fresh and dry masses, in addition to a greater Si accumulation in the plants. However, there was no difference in the quantity of DNA or in the coefficient of variation (CV) among the treatments, proving the use of silicon separately or in combination with methyl jasmonate contributed to the vegetative development and did not affect the genetic stability of the plants.
DOI: 10.6084/m9.figshare.7941500.v1
title: Silicon and methyl jasmonate in the vegetative development and genetic stability of rice

description: ABSTRACT. Given the high demand for food worldwide, options for maximizing food production with minimum environmental impact are needed. Therefore, the objective of the present study was to evaluate the effect of silicon (Si) and methyl jasmonate (MeJA) in the vegetative development and genetic stability of rice plants, BRSMG Caravera cultivar. The treatments used were T1 - Control group (without Si and MeJA); T2 - Tween foliar; and T3 - Si drench, T4 - MeJA foliar, and T5 - Si drench + MeJA foliar. The use of Si or Si + MeJA promoted an increase in the height, relative chlorophyll index (RCI), and fresh and dry masses, in addition to a greater Si accumulation in the plants. However, there was no difference in the quantity of DNA or in the coefficient of variation (CV) among the treatments, proving the use of silicon separately or in combination with methyl jasmonate contributed to the vegetative development and did not affect the genetic stability of the plants.
DOI: 10.6084/m9.figshare.7941512
title: Physiological and biochemical changes during desiccation tolerance loss in millet (Pennisetum glaucum L.) seeds

description: ABSTRACT. The aim of this study was to evaluate the physiological and biochemical changes related to desiccation tolerance loss in millet seeds. The studied points of the germination process were determined according to the seed imbibition curve of the millet hybrid ADRF6010: control (0h), 3h of imbibition, 1 and 3 mm radicle. The seeds were dried on silica gel for 72h at 20°C, followed by pre-humidification at 25°C for 24h. Seed physiological quality was evaluated by electrical conductivity and a germination test, and seed vigor was evaluated with a first germination count and a germination speed index. The experiment was performed in a completely randomized design, and means were compared by the Scott-Knott test at a 5% probability. The enzymatic systems of superoxide dismutase, catalase, peroxidase, and α-amylase, as well as the expression of heat-resistant proteins were evaluated. Enzymatic activity was quantified with the ImageJ® software. Millet seeds lost desiccation tolerance when the radicle reached 1 mm in length. According to enzymatic standards, peroxidase and α-amylase activity, as well as heat-resistant protein activity, were related to desiccation tolerance loss in millet seeds.
DOI: 10.6084/m9.figshare.7941512.v1
title: Physiological and biochemical changes during desiccation tolerance loss in millet (Pennisetum glaucum L.) seeds

description: ABSTRACT. The aim of this study was to evaluate the physiological and biochemical changes related to desiccation tolerance loss in millet seeds. The studied points of the germination process were determined according to the seed imbibition curve of the millet hybrid ADRF6010: control (0h), 3h of imbibition, 1 and 3 mm radicle. The seeds were dried on silica gel for 72h at 20°C, followed by pre-humidification at 25°C for 24h. Seed physiological quality was evaluated by electrical conductivity and a germination test, and seed vigor was evaluated with a first germination count and a germination speed index. The experiment was performed in a completely randomized design, and means were compared by the Scott-Knott test at a 5% probability. The enzymatic systems of superoxide dismutase, catalase, peroxidase, and α-amylase, as well as the expression of heat-resistant proteins were evaluated. Enzymatic activity was quantified with the ImageJ® software. Millet seeds lost desiccation tolerance when the radicle reached 1 mm in length. According to enzymatic standards, peroxidase and α-amylase activity, as well as heat-resistant protein activity, were related to desiccation tolerance loss in millet seeds.
DOI: 10.6084/m9.figshare.7941731
title: Methods for overcoming dormancy and seed storage of Enterolobium contortisiliquum

description: ABSTRACT. The production of forest species that present seedlings with exogenous dormancy is limited by low germination rates, which can be overcome by rupturing or weakening the tegument. This study aimed to evaluate the efficiency of low-cost methods of overcoming dormancy and determine the effect of storage on the seeds of Enterolobium contortisiliquum. Four storage periods were used, freshly collected seeds (0), stored for 6, 12 and 18 months, and four methods were applied, mechanical scarification and immersion in water (EI), mechanical scarification (ES), immersion in water (IM) and control (TE). We obtained the percentage values of seedling emergence (EP) and the mean emergence time (TME). Conductivity and moisture were obtained as indicators of the physical and physiological quality of seeds, respectively. Variations in moisture content and electrical conductivity during storage did not have effect on the percentage of germination. EI treatment was more efficient for overcoming dormancy than the ES was, regardless of storage time. IM and TE treatments did not lead to germination. EI was the most efficient treatment for decreasing the TME. The results indicate that alternative and low-cost methods are efficient at overcoming exogenous dormancy and thus can be used to optimize the process of seedling production.
DOI: 10.6084/m9.figshare.7941731.v1
title: Methods for overcoming dormancy and seed storage of Enterolobium contortisiliquum

description: ABSTRACT. The production of forest species that present seedlings with exogenous dormancy is limited by low germination rates, which can be overcome by rupturing or weakening the tegument. This study aimed to evaluate the efficiency of low-cost methods of overcoming dormancy and determine the effect of storage on the seeds of Enterolobium contortisiliquum. Four storage periods were used, freshly collected seeds (0), stored for 6, 12 and 18 months, and four methods were applied, mechanical scarification and immersion in water (EI), mechanical scarification (ES), immersion in water (IM) and control (TE). We obtained the percentage values of seedling emergence (EP) and the mean emergence time (TME). Conductivity and moisture were obtained as indicators of the physical and physiological quality of seeds, respectively. Variations in moisture content and electrical conductivity during storage did not have effect on the percentage of germination. EI treatment was more efficient for overcoming dormancy than the ES was, regardless of storage time. IM and TE treatments did not lead to germination. EI was the most efficient treatment for decreasing the TME. The results indicate that alternative and low-cost methods are efficient at overcoming exogenous dormancy and thus can be used to optimize the process of seedling production.
DOI: 10.6084/m9.figshare.7941503
title: Growth and photosynthetic parameters of saccharine sorghum plants subjected to salinity

description: ABSTRACT. Plants are often exposed to abiotic stresses such as salinity, which represents a barrier to the cultivation of agricultural species mainly in arid and semi-arid regions. This study evaluated the development of four saccharine sorghum genotypes for tolerance to different salinity levels under greenhouse conditions. The experimental design was a randomized complete block arranged in a 5 × 4 factorial scheme, which corresponded to five levels of irrigation water salinity [electrical conductivities of 0.5 (control), 2.5, 5.0, 7.5, and 10.0 dS m-1] and four saccharine sorghum genotypes (CSF 11, CSF 15, P 76 and P 298), with five replicates. The plants were evaluated for dry mass production, leaf area, height, stalk diameter, leaf gas exchange and relative chlorophyll content. The growth and leaf gas exchange measurements of the saccharine sorghum plants were significantly affected by salinity stress. Among the genotypes, CSF 11 and CSF 15 exhibited smaller reductions in growth, whereas P 298 showed the greatest reduction. These findings show that genotype CSF 11 can be classified as the most tolerant to salt stress, and genotype P 298 is the most sensitive.
DOI: 10.6084/m9.figshare.7941503.v1
title: Growth and photosynthetic parameters of saccharine sorghum plants subjected to salinity

description: ABSTRACT. Plants are often exposed to abiotic stresses such as salinity, which represents a barrier to the cultivation of agricultural species mainly in arid and semi-arid regions. This study evaluated the development of four saccharine sorghum genotypes for tolerance to different salinity levels under greenhouse conditions. The experimental design was a randomized complete block arranged in a 5 × 4 factorial scheme, which corresponded to five levels of irrigation water salinity [electrical conductivities of 0.5 (control), 2.5, 5.0, 7.5, and 10.0 dS m-1] and four saccharine sorghum genotypes (CSF 11, CSF 15, P 76 and P 298), with five replicates. The plants were evaluated for dry mass production, leaf area, height, stalk diameter, leaf gas exchange and relative chlorophyll content. The growth and leaf gas exchange measurements of the saccharine sorghum plants were significantly affected by salinity stress. Among the genotypes, CSF 11 and CSF 15 exhibited smaller reductions in growth, whereas P 298 showed the greatest reduction. These findings show that genotype CSF 11 can be classified as the most tolerant to salt stress, and genotype P 298 is the most sensitive.