cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5070945
title: Dataset of The distinct influence of different maternal mental health symptom profiles on infant sleep during the first year postpartum: a cross-sectional survey

description: The distinct influence of different, but comorbid, maternal mental health difficulties, such as postpartum depression, anxiety, or childbirth-related posttraumatic stress disorder (CB-PTSD) on infant sleep is unknown, although maternal mental health was reported to be associated with infant sleep. This paper first aimed to associations between maternal mental health symptoms and infant sleep. Second, it aimed to exploratory obtain maternal mental health symptom profiles from maternal mental health symptoms. Finally, it aimed to investigate the distinct influence of these maternal mental health symptom profiles on infant sleep, when including mediators (i.e., maternal perception of infant temperament and method to fall asleep) and moderators (maternal educational level and infant age). This dataset contains data on the mental health (i.e., CB-PTSD, depression, anxiety) of 410 mothers with an infant aged between 3 to 12 months old. Information on infant sleep and temperament (negative emotionality) was collected via standardised maternal-report questionnaires (City BiTS, EPDS, HADS, BISQ, and IBQ-R very short form). Sociodemographic data such as maternal age, marital status, educational level, infant age, and week of gestation are reported. This dataset is related to: Sandoz, V.; Lacroix, A.; Stuijfzand, S.; Bickle Graz, M.; Horsch, A. Maternal Mental Health Symptom Profiles and Infant Sleep: A Cross-Sectional Survey. <em>Diagnostics</em> <strong>2022</strong>, <em>12</em>, 1625. https://doi.org/10.3390/diagnostics12071625.
DOI: 10.5281/zenodo.5070944
title: Dataset of The distinct influence of different maternal mental health symptom profiles on infant sleep during the first year postpartum: a cross-sectional survey

description: The distinct influence of different, but comorbid, maternal mental health difficulties, such as postpartum depression, anxiety, or childbirth-related posttraumatic stress disorder (CB-PTSD) on infant sleep is unknown, although maternal mental health was reported to be associated with infant sleep. This paper first aimed to associations between maternal mental health symptoms and infant sleep. Second, it aimed to exploratory obtain maternal mental health symptom profiles from maternal mental health symptoms. Finally, it aimed to investigate the distinct influence of these maternal mental health symptom profiles on infant sleep, when including mediators (i.e., maternal perception of infant temperament and method to fall asleep) and moderators (maternal educational level and infant age). This dataset contains data on the mental health (i.e., CB-PTSD, depression, anxiety) of 410 mothers with an infant aged between 3 to 12 months old. Information on infant sleep and temperament (negative emotionality) was collected via standardised maternal-report questionnaires (City BiTS, EPDS, HADS, BISQ, and IBQ-R very short form). Sociodemographic data such as maternal age, marital status, educational level, infant age, and week of gestation are reported. This dataset is related to: Sandoz, V.; Lacroix, A.; Stuijfzand, S.; Bickle Graz, M.; Horsch, A. Maternal Mental Health Symptom Profiles and Infant Sleep: A Cross-Sectional Survey. <em>Diagnostics</em> <strong>2022</strong>, <em>12</em>, 1625. https://doi.org/10.3390/diagnostics12071625.
DOI: 10.6084/m9.figshare.20417625
title: Three-dimensional Simulations of Ultra-relativistic Electron Accelerations during the 21 April 2017 Storm

description: figure data sets of paper 'Three-dimensional Simulations of Ultra-relativistic Electron Accelerations during the 21 April 2017 Storm'
DOI: 10.6084/m9.figshare.20417625.v1
title: Three-dimensional Simulations of Ultra-relativistic Electron Accelerations during the 21 April 2017 Storm

description: figure data sets of paper 'Three-dimensional Simulations of Ultra-relativistic Electron Accelerations during the 21 April 2017 Storm'
DOI: 10.26036/cnp0000731
title: Chimonanthus salicifolius genome project

description: Chimonanthus salicifolius, a member of the magnoliid family, is one of the most famous traditional medicinal plants in Eastern China. Here, we report a draft chromosome-level genome assembly of C. salicifolius, comprising 820.1 Mb of genomic sequence with contig N50 up to 2.25 Mb and containing 36,651 annotated protein-coding genes. The data obtained in this study not only provide a representative genome sequence from the magnoliids but also open the door to functional genomic research and molecular breeding of C. salicifolius.
DOI: 10.26036/cnp0002662
title: Sequencing data of Bungarus multicinctus

description: genome and transcriptome sequencing data of Bungarus multicinctus
DOI: 10.26036/cnp0003000
title: Metagenomic sequencing of reservoir samples

description: Metagenomic sequences were obtained using the GenoLab M platform. We performed taxonomic composition analysis by mapping the sequence reads of ten water samples to FWAlgaeDB.
DOI: 10.26036/cnp0002693
title: 三个Hordeum Linn.叶绿体基因组

description: Hordeum Linn. is distributed almost everywhere from the southern hemisphere to the northern hemisphere. Among them, three wild species (H. bogdanii, H. brevisubulatum and H. violaceum) could serve as important material for genetic improvement. Up to now, only two chloroplast (cp) genomes of Hordeum species (H. vulgare and H. spontaneum) have been reported. Therefore, it is necessary for us to make a comparison for inter-species, and cp genomes of three Hordeum species were sequenced and assembled, in order to explore the degree of variation each other. The research results illuminated that compared to the other two species (H. brevisubulatum and H. violaceum) with approximately the same cp genome, H. bogdanii had significant differences. This result can be explained by cp genome size, repeat sequences, insertions/deletions (In/Dels), Single Nucleotide Polymorphisms (SNPs) and invert repeats (IR) expansion or contraction. Meanwhile, a large number of SNPs, In/Dels and repeated sequences events were found in three Hordeum species. In addition, a series of hotspots regions (tRNA-UGU～ndhJ, psbE～rps18, ndhF～tRNA-UAG, and so on) were identified by the mVISTA and Mauve, and five highly polymorphic genes (tRNA-UGC, tRNA-UAA, tRNA-UUU, tRNA-UAC, ndhA) were proved by the nucleotide polymorphisms (pi). What is attention that the phylogenic tree among these species were also analyzed. This article provides a theoretical basis for understanding the evolution of Hordeum Linn and expands the cp genome database.
DOI: 10.26036/cnp0001416
title: 火炭母的浅层基因组测序

description: 采用改良CTAB法提取植物的总DNA，使用第二代高通量测序平台Illumina Novape，150 bp双末端测序策略对其全基因组DNA建库测序，建库类型为350 bp DNA小片段文库，测序数据量为3G。
DOI: 10.26036/cnp0002791
title: Effects on the transcriptome of Escherichia coli BL21(DE3) by over-expression of grpE and birA

description: grpE and birA were overexpressed in an engineering strain of E. coli BL21(DE3) which could synthesize phloroglucinol. The transcriptomes were sequenced on Novaseq 6000 Sequencing Platform.
DOI: 10.26036/cnp0001815
title: 桑蚕大规模测序

description: 本项目测序分析了千余个覆盖了桑蚕多样性的样本，旨在构建桑蚕多样性变异图谱，为经济、生态等性状解析、害虫防治等提供了坚实的数据基础。
DOI: 10.26036/cnp0002797
title: Intestinal flora is involved in Hyperuricemia

description: Hyperuricemia is a necessary physiological factor leading to gout. Although intestinal flora is different between healthy and patients with hyperuricemia, their causality is unclear. This study explored the association between intestinal flora and hyperuricemia in goslings. The hyperuricemia model was established in gosling by a high protein diet (HPD). 16S sequencing showed that the cecal microbiota differed significantly between the HPD and control groups (fed with the normal protein). The abundance of Firmicutes was higher in the HPD group, while the Bacteroidetes were lower than controls. To investigate the role of intestinal flora in hyperuricemia, the cecum microbiotas from the HPD group and the control group were transplanted to the newly born goslings by gavage. The serum uric acid levels of the goslings that transplanted the cecal microbiota of the HPD group were significantly higher than the goslings that transplanted the cecal microbiota of the controls. Furthermore, the transplantation of cecal microbiota also affects the production and excretion of uric acid in goslings. These results showed that intestinal flora was involved in hyperuricemia. The intestinal flora might serve as a new target for hyperuricemia and gout therapeutic approaches.
DOI: 10.26036/cnp0001955
title: 16S amplicon and transcriptome data for COPD mouse experiments

description: This depository contains 16S rRNA gene amplicon sequencing and host transcriptome data for mouse experiments to understand the role of IAA and its producing bacteria in protecting COPD.
DOI: 10.26036/cnp0001959
title: Efficient Multiplex Genome Editing Tools of Protoplast Technology in Phalaenopsis

description: Here we established a seedling-leaf protoplast-based platform to identify functional and efficient multiplex genome editing systems for Phalaenopsis. Our data indicated that: (ⅰ) tRNA-based multiplex genome editing tool was effective in Phalaenopsis; (ⅱ) optimizing the sgRNA structure could further improve the efficiency of the tRNA-based multiplex genome editing tools in Phalaenopsis; (ⅲ) dual Pol II promoter-Cpf1 multiplex genome editing system was also functional in Phalaenopsis. The newly established protoplast platform and the multiplex genome editing tools for Phalaenopsis, have great application potentials in rapidly constructing large-scale mutant libraries of orchid and speeding up orchid precise breeding in the future.
DOI: 10.26036/cnp0001147
title: Insights into the trade-off between reproductive effort and survival from mammals with an annual life-history

description: In this project, we will investigate the semelparous mammals of South America during their short, highly-synchronised breeding seasons. Unveiling the life-history of these enigmatic animals using genomic data (genomes, transcriptomes, and epigenomes) will deliver insights into the evolution of semelparity, the universal ageing process, and marsupial biology. Data generated in this study will be shared through the community resource http://www.semelparous.life, creating opportunities for future studies and aiding conservation efforts.
DOI: 10.26036/cnp0001990
title: Mariana Trench Microbiome & Mobilom

description: The Microbiome and Mobilom of Mariana Trench
DOI: 10.26036/cnp0002004
title: Metagenomic analysis revealed a wide distribution of phototrophic bacteria in hydrothermal vent on the ultraslow-spreading

description: To answer the question how geographically and taxonomically widespread are phototrophs in the deep-sea hydrothermal vents we collected samples from three niches in a hydrothermal vent on the Southwest Indian Ridge and carried out an integrated metagenomic analysis. We observed typical communitity structure of microorganisms found in active venting fileds, and identified populations of known potential chorophototrophs and retinalophototrophs.
DOI: 10.26036/cnp0002082
title: Gold-ringed octopus genome

description: Whole genome and single-cell transcriptome sequencing of Gold-ringed octopus (Amphioctopus fangsiao)
DOI: 10.26036/cnp0002119
title: CNPGUT2020ANTIPD1

description: Several antibodies targeting programmed cell death protein-1 (PD-1) have been reported safety profiles and promising antitumor activities in patients with nasopharyngeal carcinoma (NPC). However, only a small subset of patients benefits from the anti-PD-1 monotherapy, and the factors that affect the response need further study. This study aims to investigate multiple impact factors by analyzing the tumor, blood, and fecal samples of 57 NPC patients that accept Nivolumab or Camrelizumab treatment. The whole exon sequencing (WES) data was obtained to analyzed the tumor mutation burden (TMB). We observed that high TMB combined with heterozygosity at human leukocyte antigen class I (HLA-I) loci is associated with improved clinical outcomes. The plasma EBV DNA loads were quantified by quantitative polymerase chain reaction for blood specimens. In agreement with previous studies, we find the patients with higher plasma EBV DNA load showed worse progression-free survival. More importantly, we examined the patients' gut microbiome composition by metagenomic shotgun sequencing and identified a high abundance of Clostridiales bacterium and Blautia obeum in non-responders. This study provides insight into the influence of multiple genetic and environmental factors on the anti-PD-1 immunotherapy in NPC patients.
DOI: 10.26036/cnp0002237
title: Metagenomic next-generation sequencing provides prognostic warning by identifying multiple infections in nocardiosis

description: There were 18 patients enrolled in this study who were detected Nocardia by metagenomic next-generation sequencing.
DOI: 10.26036/cnp0002317
title: Single cell atlas of pregnant woman PBMCs spanning the whole gestation weeks

description: Single cell atlas of pregnant woman PBMCs spanning the whole gestation weeks
DOI: 10.26036/cnp0002314
title: 绿背山雀数据

description: 绿背山雀测序数据
DOI: 10.26036/cnp0002315
title: 橙翅噪鹛测序数据

description: 橙翅噪鹛测序数据
DOI: 10.26036/cnp0002891
title: Transcriptome study on the venom system of Conus striatus

description: Transcriptome study on the venom system of Conus striatus
DOI: 10.26036/cnp0001985
title: Genome of Toona ciliata Roem.

description: Toona ciliata is a deciduous or semi deciduous tree species in genus Toona of family Meliaceae. It is a precious timber species in southern China and now classified as an endangered species at Class II. To provide support for genetic conservation, breeding, evolution and taxonomic study, the whole genome of T. ciliata was sequenced. The sample was collected from Pupiao in Baoshan city of Yunnan Province, China.
DOI: 10.26036/cnp0002406
title: Multi-omics analysis to Vibrio parahaemolyticus

description: Multi-omics analysis to Vibrio parahaemolyticus
DOI: 10.26036/cnp0002441
title: Construction of cynomolgus monkey cell atlas by scATAC seq and scRNA seq

description: In this study, we tried to create a cellular transcriptome map of cynomolgus monkeys at the single-cell level. The cell landscape covers major organs including adipose, aorta, bladder, breast, colon, heart, kidney, liver, lung, muscle, spleen, stomach, testis, tongue, trachea and uterus. We also perform an integrative analysis of scRNA-seq and scATAC-seq of several organs to define transcriptional and epigenetic changes in cynomolgus monkey. Importantly, we have compared the differences in cell maps of human, mouse and monkey, we hope to provide sufficient information about primates for subsequent preclinical experiments.
DOI: 10.26036/cnp0002456
title: 桑蚕大规模测序基因组及变异

description: 100个桑蚕组装基因组及1082个桑蚕SNP变异数据和545个桑蚕SV变异数据
DOI: 10.26036/cnp0002489
title: Construction of a high-density genetic map and identification of QTLs related to agronomic and physiological traits

description: Construction of a high-density genetic map and identification of QTLs related to agronomic and physiological traits in an interspecific (G. hirsutum x G. barbadense) F2 population
DOI: 10.26036/cnp0002427
title: Construction of cynomolgus monkey cell atlas by scRNA seq and scATAC seq

description: In this study, we tried to create a cellular transcriptome map of cynomolgus monkeys at the single-cell level. The cell landscape covers major organs including adipose, aorta, bladder, breast, colon, heart, kidney, liver, lung, muscle, spleen, stomach, testis, tongue, trachea and uterus. We also perform an integrative analysis of scRNA-seq and scATAC-seq of several organs to define transcriptional and epigenetic changes in cynomolgus monkey. Importantly, we have compared the differences in cell maps of human, mouse and monkey, we hope to provide sufficient information about primates for subsequent preclinical experiments.
DOI: 10.26036/cnp0002110
title: 绒毛滋养层/trophoblast stem cell

description: Bipotent human trophoblast stem cells (hTSCs) recapitulate placenta development at 1st trimester. The molecular roadmap of bi-directional differentiation from hTSCs at single cell resolution remains elusive. Here, using scRNA-Seq, scATAC-Seq (assay for transposase-accessible chromatin) and Stereo-seq (SpaTial Enhanced REsolution Omics-sequencing) to determine the origin, heterogeneity, and differentiation capacity of hTSCs derived from 1st trimester villi, we firstly inferred ITGA6+/TP63+ cytotrophoblast cells (CTBs) as hTSCs. Then, time-course single-cell profiling of trophoblast cell fate decision from hTSCs enable us to comprehensively map a stepwise and multiple transcription factors involved trophoblast lineage restriction process. Furthermore, we revealed the profound influence of Ipatasertib and Ravoxertinib on hTSCs differentiation including cellular morphology, composition, and maturation through PI3K-Akt and ERK-MAPK pathway, respectively. Taken together, these data highlight a single cell-resolution roadmap for bipotent hTSCs differentiation and accelerate the development of early intervention strategy by small chemical inhibitors in placenta developmental diseases.
DOI: 10.26036/cnp0002571
title: Metagenomic analysis reveals the distribution of antibiotic resistomes and microbiomes in the chicken gut

description: On each of the 629 samples, we carried out a single-sample metagenomic assembly. A total of 25598 MAGs were created from binning. With a total of 4062 high-quality genomes with completeness ≥ 80% and contamination ≤ 10%, we were left.
DOI: 10.6084/m9.figshare.20417658
title: Geographical clusters of dengue outbreak in Singapore during the COVID-19 nationwide lockdown of 2020

description: Dengue, a mosquito-transmitted viral disease, has posed a public health challenge to Singaporean residents over the years. In 2020, Singapore experienced an unprecedented dengue outbreak. We collected a dataset of geographical dengue clusters reported by the National Environment Agency (NEA) from 15 February to 9 July in 2020, covering the nationwide lockdown associated with COVID-19 during the period from 7 April to 1 June. NEA regularly updates the dengue clusters during which an infected person may be tagged to one cluster based on the most probable infection location (residential apartment or workplace address), which is further matched to fine-grained spatial units with an average coverage of about 1.35 km2. Such dengue cluster dataset helps not only reveal the dengue transmission patterns, but also reflect the effects of lockdown on dengue spreading dynamics. The resulting data records are released in simple formats for easy access to facilitate studies on dengue epidemics.
DOI: 10.26036/cnp0002583
title: Chloroplast genome sequencing and assembly of S. bumalda

description: The complete chloroplast genome sequence of S. bumalda is 160319bp in length with an overall GC content of 32.79%, which is composed of a large single copy region (LSC: 89,401bp), a small single copy region (SSC: 18,834 bp), and two inverted repeat regions (IR: 26,042 bp). A total of 130 genes were predicted in this genome, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes.
DOI: 10.26036/cnp0002809
title: 钩吻基因组测序数据

description: 异型花柱植物钩吻长柱型和短柱型PicBio测序，短等柱型二代基因组测序数据
DOI: 10.26036/cnp0001162
title: 抑郁症的肠道微生物

description: 基于宏基因测序结果分析挖掘抑郁症的肠道微生物特征
DOI: 10.26036/cnp0002603
title: 16S rRNA gene-based bacterial community in wheat rhizosphere soil小麦根际土壤细菌多样性

description: 16S rRNA gene-based bacterial community in wheat rhizosphere soil小麦根际土壤细菌多样性，基于P0，P70，P120田间试验
DOI: 10.11588/data/qahwsf/jazjuk
title: SyntheticASLData.zip

description: :unav
DOI: 10.26036/cnp0002899
title: Dissecting key factors that govern recombination outcomes by GCE-SCRaMbLE

description: 研究非天然氨基酸改造的酪氨酸重组酶发生SCRaMbLE的效果与影响因素
DOI: 10.26036/cnp0003131
title: Gene rearrangements in the mitochondrial genome of ten ascaris species

description: The Ascaridoidea familiy and Heterakoidea familiy are the most common and typical representative of large parasites, which occur in the digestive tract of almost all major vertebrates, including humans. Although our understanding of these parasites’ diversity has expanded by analyses of some mitochondrial genes, there is limited information on these species’ evolutionary rates. Here we determined ten complete mitogenome sequences of five subfamilies of Ascaridoidea and one subfamily of Heterakoidea. The phylogenetic tree divided the Ascaridoidea into six monophyletic major clades, and the divergence time of Heterakoidea familiy and Ascaridoidea familiy can be placed during the early Carboniferous Period (300 ~ 360 Mya). The reconstruction of the ancestral state showed that the gene orders of all species in Ascaridoidea were conserved, and the Heterakoidea had obvious genome rearrangement. The conserved blocks between them were divided into five and the main types are tandem-duplication/random loss (TDRL). These results will help to better understand the gene rearrangements and evolutionary position of ascaris species.
DOI: 10.26036/cnp0003142
title: High throughput sequencing data of the sgRNA-ctrp1-624 for Euglena gracilis crtP1 mRNA

description: High throughput sequencing data of the sgRNA-ctrp1-624 for Euglena gracilis crtP1 mRNA
DOI: 10.26036/cnp0001821
title: Human fecal and environmental samples metagenomics

description: Human fecal and environmental samples metagenomics. Human subjects (aged from 18 to 50) with no gastrointestinal disorders or chronic health conditions were recruited, and no antibiotic, antifungal, or antiparasitic therapy was administered to any enrolled subject at the time of sample collection or in the previous six months.
DOI: 10.26036/cnp0003159
title: 醉鱼草浅层测序数据（Genome skimming data of Buddleja）

description: 醉鱼草浅层测序数据
DOI: 10.26036/cnp0003154
title: 结肠癌肝转移基因地标及其预后价值研究

description: 结肠癌肝转移患者有独特的基因地标，探索和挖掘结直肠癌肝转移患者的基因地标将会为个体化精准治疗提供显著帮助。此外，结直肠癌肝转移患者现在的临床评分系统fong scoring system采用临床指标，随着二代测序飞速发展，DNA测序技术为更精准地判断患者预后提供了帮助。基于二代测序的预后评分系统尚未形成业界共识，因此，本研究拟通过分析150例既往住院的结直肠癌肝转移的二代测序结果及临床数据，探索新一代结肠癌肝转移患者的基因地标及基于基因地标的预后评分系统，为实现结直肠癌肝转移患者的精准医疗进行探索。
DOI: 10.26036/cnp0003165
title: Rubus peltatus and Rubus buergeri chloroplast, complete genome

description: 两种悬钩子属植物（Rubus peltatus and Rubus buergeri）的叶绿体基因组数据
DOI: 10.26036/cnp0003177
title: chloroplast genome sequences of three Cucurbita species (Cucurbitaceae)

description: Cucurbita moschata , Cucurbita maxima and Cucurbita argyrosperma are three worldwide famous ornamental and/or vegetable plants in the Cucurbitaceae family, These species in the genus Cucurbita are taxonomically perplexing due to shared interspecific morphological traits and variation. This study, for the first time ever, assembled and analyzed complete chloroplast genomes of C. moschata, C. maxima and C. argyrosperma.
DOI: 10.26036/cnp0003166
title: Gene expression of standard-treatment resistant p95-ErbB2 expressing cancer cell line

description: To investigate the gene expression that is involved in depletion of MZF1 which leads to the inhibition of invasion of p95-ErbB2 expressing breat cancer cell spheroids and thus can be regulating the invasion of these cells.
DOI: 10.26036/cnp0003200
title: 超排绵羊血清代谢组分析

description: The non-invasive diagnostic method for multiple ovulation prediction is necessary to improve the efficiency. The blood hormones and metabolites would be suitable indexes for this subject. Methods: In this study, 86 estrus ewes (65 of induced estrus (IE) and 21 of spontaneous estrus (SE)) were selected and the blood samples were collected at the day before FSH injection (1st) and before artificial insemination (2nd). The untargeted metabolomics analysis of serum was processed through LC-MS/MS.
DOI: 10.26036/cnp0003212
title: 暗纹东方鲀受低氧和副溶血弧菌胁迫的转录组学

description: 对暴露于低氧胁迫或者副溶血弧菌感染下的暗纹东方鲀的全肝进行了转录组学分析。
DOI: 10.26036/cnp0003226
title: two homolog phages infecting Pseudomonas aeruginosa

description: PPAT and PPAY are two homolog phages infecting Pseudomonas aeruginosa.