cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6891130
title: The HAInich: A multidisciplinary vision data-set for a better understanding of the forest ecosystem

description: We present a multidisciplinary forest ecosystem 3D perception dataset. The dataset was collected in the Hainich-Dün region in central Germany, which includes two dedicated areas, which are part of the Biodiversity Exploratories - a long term research platform for comparative and experimental biodiversity and ecosystem research. The dataset combines several disciplines, including computer science and robotics, biology, bio-geochemistry, and forestry science. We present results for common 3D perception tasks, including classification, depth estimation, localization, and path planning. We combine the full suite of modern perception sensors, including high-resolution fisheye cameras, 3D dense LiDAR, differential GPS, and an inertial measurement unit, with ecological metadata of the area, including stand age, diameter, exact 3D position, and species. The dataset consists of three hand held measurement series taken from sensors mounted on a UAV during each of three seasons: winter, spring, and early summer. This enables new research opportunities and paves the way for testing forest environment 3D perception tasks and mission set automation. We do not focus on even more accurate and better forest data collection, our focus is automated forest inventory for robots.
description: The data is stored as follows: forest_data/ ├── winter/ │ ├── forest_1/ │ ├── forest_2/ ├── spring/ │ ├── forest_1/ │ ├── forest_2/ ├── summer/ │ ├──forest_1/ │ ├──forest_2/ calibration_and_tools/ meta_data/ The recorded datasets are zipped into a single file named forest.zip, all data are provided as rosbags (e.g. h1f1r1.bag). Three recordings were done during summer, spring and winter in 2 different forest locations HEW5 and HEW45, referred to as forest_1 and forest_2 respectively. The naming of the rosbags refers to the following convention, e.g. abc.bag, where a is either h1 (winter), h2 (spring), h3 (summer), b refers to f1 for HEW5 and f2 for HEW45 and c is an id either r1 or r2. The metadata (manual acquired data by foresters) for all 1967 trees in the experiment area is provided in xlsx file with the following fields: EP − area, Lat, Lon, GKR, GKH , Xm,Ym, Zm, ID, date, DBHmm, Species, multi − stem, brakewood, year, coordinate − system
DOI: 10.6084/m9.figshare.21786479
title: IV.4_p40.vcf

description: Somatic mutations accumulated in fibroblast colony during ~40 passages.Fibroblasts obtained from individual IV.4. Mutations in the colony at the end time point of the experiment were called against colonies at the start time point of the experiment using Mutect2.
DOI: 10.6084/m9.figshare.21786479.v1
title: IV.4_p40.vcf

description: Somatic mutations accumulated in fibroblast colony during ~40 passages.Fibroblasts obtained from individual IV.4. Mutations in the colony at the end time point of the experiment were called against colonies at the start time point of the experiment using Mutect2.
DOI: 10.6084/m9.figshare.21786482
title: IV.5_p40.vcf

description: Somatic mutations accumulated in fibroblast colony during ~40 passages.Fibroblasts obtained from individual IV.5. Mutations in the colony at the end time point of the experiment were called against colonies at the start time point of the experiment using Mutect2.
DOI: 10.6084/m9.figshare.21786482.v1
title: IV.5_p40.vcf

description: Somatic mutations accumulated in fibroblast colony during ~40 passages.Fibroblasts obtained from individual IV.5. Mutations in the colony at the end time point of the experiment were called against colonies at the start time point of the experiment using Mutect2.
DOI: 10.6084/m9.figshare.21253362
title: Raw data, scripts, and figures from Towards Imposing Dayparted Restrictions On Tokenised Energy Within Peer-to-peer Markets

description: Raw data, scripts, and figures from Towards Imposing Dayparted Restrictions On Tokenised Energy Within Peer-to-peer Markets
DOI: 10.6084/m9.figshare.21253362.v1
title: Raw data, scripts, and figures from Towards Imposing Dayparted Restrictions On Tokenised Energy Within Peer-to-peer Markets

description: Raw data, scripts, and figures from Towards Imposing Dayparted Restrictions On Tokenised Energy Within Peer-to-peer Markets
DOI: 10.6084/m9.figshare.21786425
title: IV.2_p40.vcf

description: Somatic mutations accumulated in fibroblast colony during ~40 passages.Fibroblasts obtained from individual IV.2. Mutations in the colony at the end time point of the experiment were called against colonies at the start time point of the experiment using Mutect2.
DOI: 10.6084/m9.figshare.21786425.v2
title: IV.2_p40.vcf

description: Somatic mutations accumulated in fibroblast colony during ~40 passages.Fibroblasts obtained from individual IV.2. Mutations in the colony at the end time point of the experiment were called against colonies at the start time point of the experiment using Mutect2.
DOI: 10.6084/m9.figshare.21786425.v1
title: Untitled ItemIV.2_p40.vcf

description: Somatic mutations accumulated in fibroblast colony during ~40 passages.Fibroblasts obtained from individual IV.2. Mutations in the colony at the end time point of the experiment were called against colonies at the start time point of the experiment using Mutect2.
DOI: 10.5281/zenodo.7488831
title: Valsts pētījumu programmas "Kultūras kapitāls kā resurss Latvijas ilgtspējīgai attīstībai/ CARD" apakšprojekta par kultūras indikatorien datu masīvs ekonomiskās ietekmes aprēķinam

description: Pētījuma ietvaros analizēti Latvijas mūzikas nozares makroekonomiskie rādītāji un nozares ekonomiskais devums tautsaimniecībai, sniedzot papildus argumentus kultūrpolitikas veidotājiem diskusijās par kultūras un radošo nozaru nozīmi valsts un sabiedrības attīstībā. Padziļināti vērtēta mūzikas nozares produktivitāte, pievienotā vērtība, nodarbinātības īpatsvars un efektivitāte, salīdzinot tos ar vidējiem valsts rādītājiem. Tā kā statistikas datu trūkuma dēļ nav iespējams novērtēt mūzikas nozares ietekmi uz tautsaimniecību, tad pētījumā tika novērtēts visas kultūras nozares (NACE kods R) multiplikatora efekts un ietekme uz Latvijas ekonomiku. Tabulārie dati no CSP datu bāzes (pēc pasūtījuma): Mūzikas nozares klasifikāciju, uzņēmumu skaitu; apgrozījumu; pievienoto vērtību; nodarbināto personu skaitu ( 2016 - 2020); Mūzikas nozares pievienotās vērtības īpatsvars Latvijas kopējā pievienotajā vērtībā Mūzikas nozarē nodarbināto īpatsvars Latvijas kopējā nodarbināto skaitā
DOI: 10.5281/zenodo.7488830
title: Valsts pētījumu programmas "Kultūras kapitāls kā resurss Latvijas ilgtspējīgai attīstībai/ CARD" apakšprojekta par kultūras indikatorien datu masīvs ekonomiskās ietekmes aprēķinam

description: Pētījuma ietvaros analizēti Latvijas mūzikas nozares makroekonomiskie rādītāji un nozares ekonomiskais devums tautsaimniecībai, sniedzot papildus argumentus kultūrpolitikas veidotājiem diskusijās par kultūras un radošo nozaru nozīmi valsts un sabiedrības attīstībā. Padziļināti vērtēta mūzikas nozares produktivitāte, pievienotā vērtība, nodarbinātības īpatsvars un efektivitāte, salīdzinot tos ar vidējiem valsts rādītājiem. Tā kā statistikas datu trūkuma dēļ nav iespējams novērtēt mūzikas nozares ietekmi uz tautsaimniecību, tad pētījumā tika novērtēts visas kultūras nozares (NACE kods R) multiplikatora efekts un ietekme uz Latvijas ekonomiku. Tabulārie dati no CSP datu bāzes (pēc pasūtījuma): Mūzikas nozares klasifikāciju, uzņēmumu skaitu; apgrozījumu; pievienoto vērtību; nodarbināto personu skaitu ( 2016 - 2020); Mūzikas nozares pievienotās vērtības īpatsvars Latvijas kopējā pievienotajā vērtībā Mūzikas nozarē nodarbināto īpatsvars Latvijas kopējā nodarbināto skaitā
DOI: 10.6084/m9.figshare.21786515
title: IV.2_SNP_mv20.vcf

description: De novo mutations observed in individual IV.2. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786515.v1
title: IV.2_SNP_mv20.vcf

description: De novo mutations observed in individual IV.2. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.34740/kaggle/dsv/4781673
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.6084/m9.figshare.21786524.v1
title: IV.3_SNP_mv20.vcf

description: De novo mutations observed in individual IV.3. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786524
title: IV.3_SNP_mv20.vcf

description: De novo mutations observed in individual IV.3. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786530
title: IV.4_SNP_mv20.vcf

description: De novo mutations observed in individual IV.4. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786530.v1
title: IV.4_SNP_mv20.vcf

description: De novo mutations observed in individual IV.4. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786506
title: IV.1_SNP_mv20.vcf

description: De novo mutations observed in individual IV.1. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786506.v2
title: IV.1_SNP_mv20.vcf

description: De novo mutations observed in individual IV.1. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786506.v1
title: IV.1_SNV_mv20.vcf

description: De novo mutations observed in individual IV.1. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786539
title: IV.5_SNP_mv20.vcf

description: De novo mutations observed in individual IV.5. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786539.v1
title: IV.5_SNP_mv20.vcf

description: De novo mutations observed in individual IV.5. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786551
title: IV.8_SNP_mv20.vcf

description: De novo mutations observed in individual IV.8. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786551.v1
title: IV.8_SNP_mv20.vcf

description: De novo mutations observed in individual IV.8. Sequenced reads were aligned to the hg19 reference human genome downloaded from UCSC and aligned using Burrows–Wheeler alignment (BWA-MEM). <em>De novo</em> mutations were called using standard GATK4 best practices pipeline. All samples were jointly called, but only high-confidence mendelian violation sites with minimum GQ=20 for each trio member were selected. Subsequently, additional filters were applied: i) coverage of each trio member ≥10; ii) absence of reads confirming alternative allele in parents; iii) number of reads confirming reference and alternative allele in proband ≥5; iv) allele frequency of the alternative allele in the proband ≥0.3. Additionally, clustered mutations (distance between mutations ≤1000bp) were filtered out, as potential false positives. Mutations present in any other family member were also excluded. To eliminate false positive mutations coming from the sequencing of proband fibroblasts, we used other fibroblasts from the same individual (used in MA experiments) as additional confirmation of mutation presence.
DOI: 10.6084/m9.figshare.21786527
title: Oca2_repository

description: Inward and outward-facing dimer models for Oca2.
DOI: 10.6084/m9.figshare.21786527.v1
title: Oca2_repository

description: Inward and outward-facing dimer models for Oca2.