cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27184877
title: Additional file 3 of APC mutations dysregulate alternative polyadenylation in cancer

description: Additional file 3: Table S2. Summary Pearson c orrelation between gene expression and median 3′ UTR length. Summary data generated for Additional file 1: Figure S1D reflecting the mean and standard deviation of Pearson correlation coefficients generated for all 29 TCGA cancer cohorts analyzed.
DOI: 10.6084/m9.figshare.27184886
title: Additional file 6 of APC mutations dysregulate alternative polyadenylation in cancer

description: Additional file 6: Table S5. APC HITS-CLIP renanalysis target enrichment. Reanalaysis of APC HITS-CLIP data from Preitner et al. 2014 [26]. Enriched RNA targets with specific window, number of reads quantified per replicate, and specific gene annotation if enriched within a genic region. Data shown for all targets with more than 50 reads per target window total across all four replicates.
DOI: 10.6084/m9.figshare.27184886.v2
title: Additional file 6 of APC mutations dysregulate alternative polyadenylation in cancer

description: Additional file 6: Table S5. APC HITS-CLIP renanalysis target enrichment. Reanalaysis of APC HITS-CLIP data from Preitner et al. 2014 [26]. Enriched RNA targets with specific window, number of reads quantified per replicate, and specific gene annotation if enriched within a genic region. Data shown for all targets with more than 50 reads per target window total across all four replicates.
DOI: 10.6084/m9.figshare.27184889.v2
title: Additional file 7 of APC mutations dysregulate alternative polyadenylation in cancer

description: Additional file 7: Table S6. Differentially polyadenylated transcripts in low grade glioma samples with high or low APC gene expression. Quantification of the average 3′ UTR length per geen in samples with either high or low APC gene expression. For each gene, the median 3′ UTR length per group is identified which was quantified using DaPars [11].
DOI: 10.6084/m9.figshare.27644855.v1
title: Additional file 2 of DNA methylation classifier to diagnose pancreatic ductal adenocarcinoma metastases from different anatomical sites

description: Supplementary Material 2: Table S3. Detailed overview of the binomial filter scores and neural network classification scores of all included samples (Excel Table).
DOI: 10.6084/m9.figshare.27714152
title: Additional file 2 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27644858
title: Additional file 3 of DNA methylation classifier to diagnose pancreatic ductal adenocarcinoma metastases from different anatomical sites

description: Supplementary Material 3: Table S7. List of genes associated to differentially methylated CpGs mapping to promoters and enhancers in pairwise comparison: PAAD primary versus PAAD met.Liv., PAAD met.Liv. versus PAAD met.PC, and PAAD primary versus PAAD met.PC, respectively (Excel Table).
DOI: 10.6084/m9.figshare.27644858.v1
title: Additional file 3 of DNA methylation classifier to diagnose pancreatic ductal adenocarcinoma metastases from different anatomical sites

description: Supplementary Material 3: Table S7. List of genes associated to differentially methylated CpGs mapping to promoters and enhancers in pairwise comparison: PAAD primary versus PAAD met.Liv., PAAD met.Liv. versus PAAD met.PC, and PAAD primary versus PAAD met.PC, respectively (Excel Table).
DOI: 10.6084/m9.figshare.27644861.v1
title: Additional file 4 of DNA methylation classifier to diagnose pancreatic ductal adenocarcinoma metastases from different anatomical sites

description: Supplementary Material 4: Table S8. Top 10 pathways of gene sets of differentially methylated CpGs associated with promoters and enhancers in pairwise comparison: PAAD primary versus PAAD met.Liv., PAAD met.Liv. versus PAAD met.PC, and PAAD primary versus PAAD met.PC, respectively. Pathways associated with epithelial-mesenchymal transition (EMT) are marked in light red (Excel Table).
DOI: 10.6084/m9.figshare.27714164.v1
title: Additional file 6 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.27644855
title: Additional file 2 of DNA methylation classifier to diagnose pancreatic ductal adenocarcinoma metastases from different anatomical sites

description: Supplementary Material 2: Table S3. Detailed overview of the binomial filter scores and neural network classification scores of all included samples (Excel Table).
DOI: 10.6084/m9.figshare.27644861
title: Additional file 4 of DNA methylation classifier to diagnose pancreatic ductal adenocarcinoma metastases from different anatomical sites

description: Supplementary Material 4: Table S8. Top 10 pathways of gene sets of differentially methylated CpGs associated with promoters and enhancers in pairwise comparison: PAAD primary versus PAAD met.Liv., PAAD met.Liv. versus PAAD met.PC, and PAAD primary versus PAAD met.PC, respectively. Pathways associated with epithelial-mesenchymal transition (EMT) are marked in light red (Excel Table).
DOI: 10.6084/m9.figshare.27714173.v1
title: Additional file 8 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 8
DOI: 10.6084/m9.figshare.27714176
title: Additional file 9 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.30475082.v1
title: Additional file 4 of Thinking on your feet: potentially enhancing phylogenetic tree learning accessibility through a kinaesthetic approach

description: Supplementary Material 4
DOI: 10.15468/dl.hpz84m
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventarios de flora y fauna en bosques de niebla del municipio de Chámeza, Casanare"
 ]
}

 The dataset includes 281 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005977-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27714152.v1
title: Additional file 2 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27714152.v2
title: Additional file 2 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27714158
title: Additional file 4 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.27714158.v2
title: Additional file 4 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.27714161
title: Additional file 5 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.27714161.v2
title: Additional file 5 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.27714164
title: Additional file 6 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.30474530
title: Additional file 4 of Rapid and cost-effective molecular karyotyping in wheat, barley, and their cross-progeny by chromosome-specific multiplex PCR

description: Supplementary Material 4: In silico prediction of chromosome-specific MPCR products in 16 wheat and two barley genomes
DOI: 10.6084/m9.figshare.27714161.v1
title: Additional file 5 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.27714167
title: Additional file 7 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.27714167.v1
title: Additional file 7 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.27714167.v2
title: Additional file 7 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.27714173
title: Additional file 8 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 8
DOI: 10.6084/m9.figshare.27714176.v2
title: Additional file 9 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.27714179.v2
title: Additional file 10 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.27714176.v1
title: Additional file 9 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.27714179.v1
title: Additional file 10 of Characterization of the Cannabis sativa glandular trichome epigenome

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.28102971.v1
title: Additional file 4 of The Rhipicephalus sanguineus group: updated list of species, geographical distribution, and vector competence

description: Additional file 4: Script “Locality2Coordinates.py”; this Python script retrieves latitude and longitude coordinates from an Excel spreadsheet containing a column with locality names (country of origin).
DOI: 10.6084/m9.figshare.28102974
title: Additional file 5 of The Rhipicephalus sanguineus group: updated list of species, geographical distribution, and vector competence

description: Additional file 5: Script in R to generate maps. This script generates maps via longitude and latitude coordinates.
DOI: 10.6084/m9.figshare.28102986
title: Additional file 9 of The Rhipicephalus sanguineus group: updated list of species, geographical distribution, and vector competence

description: Additional file 9: Hyperlinked spreadsheet containing information about 12S rRNA sequences of the Rhipicephalus sanguineus group used for phylogenetic and distribution analyses.
DOI: 10.6084/m9.figshare.28102968
title: Additional file 3 of The Rhipicephalus sanguineus group: updated list of species, geographical distribution, and vector competence

description: Additional file 3: Script “GenBank2Fasta.py”; this Python script extracts nucleotide sequences from GenBank files.
DOI: 10.6084/m9.figshare.28102965.v1
title: Additional file 2 of The Rhipicephalus sanguineus group: updated list of species, geographical distribution, and vector competence

description: Additional file 2: Script “GenBank2Table.py”; this Python script extracts information from GenBank files, including accession codes, organism names, nucleotide sequence sizes, countries of origin, host organisms, and associated PUBMED IDs where available. The script generates hyperlinks for accession codes and PUBMED IDs, facilitating direct access to relevant databases.
DOI: 10.6084/m9.figshare.28102968.v1
title: Additional file 3 of The Rhipicephalus sanguineus group: updated list of species, geographical distribution, and vector competence

description: Additional file 3: Script “GenBank2Fasta.py”; this Python script extracts nucleotide sequences from GenBank files.
DOI: 10.6084/m9.figshare.28102974.v2
title: Additional file 5 of The Rhipicephalus sanguineus group: updated list of species, geographical distribution, and vector competence

description: Additional file 5: Script in R to generate maps. This script generates maps via longitude and latitude coordinates.
DOI: 10.6084/m9.figshare.28102989
title: Additional file 10 of The Rhipicephalus sanguineus group: updated list of species, geographical distribution, and vector competence

description: Additional file 10: Hyperlinked spreadsheet containing information about 16S rRNA sequences of the Rhipicephalus sanguineus group used for phylogenetic and distribution analyses.
DOI: 10.6084/m9.figshare.28102992
title: Additional file 11 of The Rhipicephalus sanguineus group: updated list of species, geographical distribution, and vector competence

description: Additional file 11: Hyperlinked spreadsheet containing information about cox1 sequences of the Rhipicephalus sanguineus group used for phylogenetic and distribution analyses.
DOI: 10.15468/dl.yew78j
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Korea, Republic of",
 "TaxonKey is Monochamus alternatus"
 ]
}

 The dataset includes 139 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005979-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28374424
title: Additional file 1 of Inhibition of tumour necrosis factor alpha by Etanercept attenuates Shiga toxin-induced brain pathology

description: Additional file 1.
DOI: 10.6084/m9.figshare.28374424.v1
title: Additional file 1 of Inhibition of tumour necrosis factor alpha by Etanercept attenuates Shiga toxin-induced brain pathology

description: Additional file 1.
DOI: 10.15468/dl.567b9u
title: Occurrence Download

description: A dataset containing 3952 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyla molleri"
 ]
}

 The dataset includes 3952 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005978-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28377588
title: Additional file 1 of The transcription factor combination MEF2 and KLF7 promotes axonal sprouting in the injured spinal cord with functional improvement and regeneration-associated gene expression

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28377588.v1
title: Additional file 1 of The transcription factor combination MEF2 and KLF7 promotes axonal sprouting in the injured spinal cord with functional improvement and regeneration-associated gene expression

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28377591
title: Additional file 2 of The transcription factor combination MEF2 and KLF7 promotes axonal sprouting in the injured spinal cord with functional improvement and regeneration-associated gene expression

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28377591.v1
title: Additional file 2 of The transcription factor combination MEF2 and KLF7 promotes axonal sprouting in the injured spinal cord with functional improvement and regeneration-associated gene expression

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30475124
title: Additional file 1 of Food supplied to Gaza during seven months of the Hamas-Israel war

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30475124.v1
title: Additional file 1 of Food supplied to Gaza during seven months of the Hamas-Israel war

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30475139
title: Additional file of Diversity of sulfur cycling halophiles within the Salton Sea, California’s largest lake

description: Additional file of Diversity of sulfur cycling halophiles within the Salton Sea, California’s largest lake
DOI: 10.6084/m9.figshare.28681853
title: Additional file 2 of A stress-dependent TDP-43 SUMOylation program preserves neuronal function

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28681853.v1
title: Additional file 2 of A stress-dependent TDP-43 SUMOylation program preserves neuronal function

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28681856
title: Additional file 3 of A stress-dependent TDP-43 SUMOylation program preserves neuronal function

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.28681859
title: Additional file 4 of A stress-dependent TDP-43 SUMOylation program preserves neuronal function

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.30475142
title: Additional file of A stress-dependent TDP-43 SUMOylation program preserves neuronal function

description: Additional file of A stress-dependent TDP-43 SUMOylation program preserves neuronal function
DOI: 10.6084/m9.figshare.30475142.v1
title: Additional file of A stress-dependent TDP-43 SUMOylation program preserves neuronal function

description: Additional file of A stress-dependent TDP-43 SUMOylation program preserves neuronal function
DOI: 10.6084/m9.figshare.30475139.v1
title: Additional file of Diversity of sulfur cycling halophiles within the Salton Sea, California’s largest lake

description: Additional file of Diversity of sulfur cycling halophiles within the Salton Sea, California’s largest lake
DOI: 10.6084/m9.figshare.28900208
title: Additional file 2 of The overlooked trio: sleep duration, sampling time and physical exercise alter levels of olink-assessed blood biomarkers of cardiovascular risk

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28900208.v2
title: Additional file 2 of The overlooked trio: sleep duration, sampling time and physical exercise alter levels of olink-assessed blood biomarkers of cardiovascular risk

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.30475157.v6
title: Additional file of The overlooked trio: sleep duration, sampling time and physical exercise alter levels of olink-assessed blood biomarkers of cardiovascular risk

description: Additional file of The overlooked trio: sleep duration, sampling time and physical exercise alter levels of olink-assessed blood biomarkers of cardiovascular risk
DOI: 10.6084/m9.figshare.30475157.v7
title: Additional file of The overlooked trio: sleep duration, sampling time and physical exercise alter levels of olink-assessed blood biomarkers of cardiovascular risk

description: Additional file of The overlooked trio: sleep duration, sampling time and physical exercise alter levels of olink-assessed blood biomarkers of cardiovascular risk
DOI: 10.6084/m9.figshare.29079265
title: Additional file 16 of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti

description: Additional file 16: Table S2 – Genes implicated in endo-siRNA biogenesis. All genes surpassing the whole number 0.1 reads per million mapped reads (RPM) equivalent number of counts in the antisense orientation in midgut and ovary samples. Genes surpassing the threshold in at least 2 out of 3 control (Sis) replicates and none of the Dcr2R172fsX (Dcr) replicates are included in a separate sheet, as well as their differential expression.
DOI: 10.6084/m9.figshare.29079274.v2
title: Additional file 19 of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti

description: Additional file 19: Table S3 – Gene sets of interest. Groupings of genes into gene sets, as well as the retrieved genes and their Ae. aegypti homologs. Retrieved KEGG pathways and their component genes are also included.
DOI: 10.6084/m9.figshare.29079274.v1
title: Additional file 19 of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti

description: Additional file 20: Table S4 – Accession numbers and rudimentary metadata for re-analyzed datasets. NCBI [31, 33, 37] and EBI [17] accession numbers, sample names, and sequencing strategies for the re-analyzed data from Ae. aegypti and D. melanogaster Dcr2 or D. melanogaster double Dcr2 + Piwi mutants.
DOI: 10.6084/m9.figshare.29079280.v2
title: Additional file 21 of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti

description: Additional file 21: Table S5 – Primer sequences used for small RNA library preparation. Adapters and primers used in library preparation. Samples were indexed on the 3’ end during PCR amplification. Indexed primers are indicated with their associated samples. Control and Dcr2R172fsX mosquitoes were sequenced on two separate flow cells and thus share the same indexes for tissues and replicates.
DOI: 10.6084/m9.figshare.29079280.v1
title: Additional file 21 of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti

description: Additional file 22: Table S6 – BED file of small RNA genes. Coordinates used for filtering out small RNAs originating from small RNA genes. Reads mapping to coordinates labelled as ‘miRNA’ in the last column were used for scaling of RPM between samples
DOI: 10.6084/m9.figshare.30475163
title: Additional file of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti

description: Additional file of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti
DOI: 10.15468/dl.v6njxb
title: Occurrence Download

description: A dataset containing 6123 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyla orientalis"
 ]
}

 The dataset includes 6123 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005980-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30475163.v5
title: Additional file of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti

description: Additional file of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti
DOI: 10.6084/m9.figshare.29079250
title: Additional file 11 of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti

description: Additional file 11: Table S1 – Differential expression matrix of genes and TE families. Output of DESeq2 for all (original and re-analyzed) RNA-seq datasets ordered by statistical significance (adjusted p-value). Raw counts are also supplied in separate sheets
DOI: 10.6084/m9.figshare.29079250.v2
title: Additional file 11 of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti

description: Additional file 11: Table S1 – Differential expression matrix of genes and TE families. Output of DESeq2 for all (original and re-analyzed) RNA-seq datasets ordered by statistical significance (adjusted p-value). Raw counts are also supplied in separate sheets
DOI: 10.6084/m9.figshare.29079265.v2
title: Additional file 16 of Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti

description: Additional file 16: Table S2 – Genes implicated in endo-siRNA biogenesis. All genes surpassing the whole number 0.1 reads per million mapped reads (RPM) equivalent number of counts in the antisense orientation in midgut and ovary samples. Genes surpassing the threshold in at least 2 out of 3 control (Sis) replicates and none of the Dcr2R172fsX (Dcr) replicates are included in a separate sheet, as well as their differential expression.