cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17403577
title: Example TENET MultiAssayExperiment object

description: A MultiAssayExperiment dataset created using a modified version of the TCGADownloader function from the TENET R package utilizing TCGAbiolinks package functionality. This object contains two SummarizedExperiment objects, expression and methylation, with expression data for 11,637 genes annotated to the GENCODE v36 dataset, including all 1,637 identified human TF genes, and DNA methylation data for 20,000 probes from the Illumina HM450 methylation array. The data are aligned to the human hg38 genome. Expression and methylation values were matched from 200 tumor and 42 adjacent normal tissue samples subset from the TCGA BRCA dataset. Additionally, results from running the TENET step 1-6 functions on these samples are included in the metadata of this MultiAssayExperiment object. Clinical data for these samples are included in the colData of the MultiAssayExperiment object. This dataset is intended to demonstrate TENET functions. Note: Because this dataset is a small subset of the overall BRCA dataset, results generated by TENET from this dataset differ from those presented for the BRCA dataset at large in TENET publications. 

This version of the dataset corresponds to version 1.1.1 of the TENET.ExperimentHub package.
DOI: 10.5281/zenodo.17403576
title: Example TENET MultiAssayExperiment object

description: A MultiAssayExperiment dataset created using a modified version of the TCGADownloader function from the TENET R package utilizing TCGAbiolinks package functionality. This object contains two SummarizedExperiment objects, expression and methylation, with expression data for 11,637 genes annotated to the GENCODE v36 dataset, including all 1,637 identified human TF genes, and DNA methylation data for 20,000 probes from the Illumina HM450 methylation array. The data are aligned to the human hg38 genome. Expression and methylation values were matched from 200 tumor and 42 adjacent normal tissue samples subset from the TCGA BRCA dataset. Additionally, results from running the TENET step 1-6 functions on these samples are included in the metadata of this MultiAssayExperiment object. Clinical data for these samples are included in the colData of the MultiAssayExperiment object. This dataset is intended to demonstrate TENET functions. Note: Because this dataset is a small subset of the overall BRCA dataset, results generated by TENET from this dataset differ from those presented for the BRCA dataset at large in TENET publications. 

This version of the dataset corresponds to version 1.1.1 of the TENET.ExperimentHub package.
DOI: 10.15468/dl.g4u4ws
title: Occurrence Download

description: A dataset containing 171001 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenodontia, Crocodylia, Squamata, Testudines)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-7.5 37.5,0 37.5,0 45,-7.5 45,-7.5 37.5))"
 ]
}

 The dataset includes 171001 records from 888 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046375-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9jne54
title: Occurrence Download

description: A dataset containing 57230 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ctenophthalmidae"
 ]
}

 The dataset includes 57230 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030585-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jruuju
title: Occurrence Download

description: A dataset containing 106409 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratophyllidae"
 ]
}

 The dataset includes 106409 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030581-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5c4pum
title: Occurrence Download

description: A dataset containing 19171 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bell Museum mammals"
 ]
}

 The dataset includes 19171 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030586-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bdunkq
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apis mellifera Linnaeus, 1758",
 "Country is New Caledonia",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 87 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030587-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubhw2j
title: Occurrence Download

description: A dataset containing 3497 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ischnopsyllidae"
 ]
}

 The dataset includes 3497 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030589-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69wqpp
title: Occurrence Download

description: A dataset containing 6022 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hystrichopsyllidae"
 ]
}

 The dataset includes 6022 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030588-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkvdn5
title: Occurrence Download

description: A dataset containing 1242 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is T. L. Hankinson Vertebrate Museum (EMU) Mammal Collection"
 ]
}

 The dataset includes 1242 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030590-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ze235d
title: Occurrence Download

description: A dataset containing 1382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coprinopsis stercorea (Fr.) Redhead, Vilgalys & Moncalvo"
 ]
}

 The dataset includes 1382 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030591-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.np7gzg
title: Occurrence Download

description: A dataset containing 1382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coprinopsis stercorea (Fr.) Redhead, Vilgalys & Moncalvo"
 ]
}

 The dataset includes 1382 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030592-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v26kuj
title: Occurrence Download

description: A dataset containing 18729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Orcinus orca (Linnaeus, 1758)",
 "Year 2000-2024"
 ]
}

 The dataset includes 18729 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030593-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.msfxqc
title: Occurrence Download

description: A dataset containing 65509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Piranga bidentata Swainson, 1827",
 "Year 2000-2024"
 ]
}

 The dataset includes 65509 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030594-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3qfhd
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blattella germanica (Linnaeus, 1767)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 110 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030595-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hvrf4
title: Occurrence Download

description: A dataset containing 711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((70.00453 -2.70532,144.16429 -2.70532,144.16429 56.07808,70.00453 56.07808,70.00453 -2.70532))",
 "HasCoordinate is true",
 "TaxonKey is Chosenia arbutifolia (Pall.) A.K.Skvortsov"
 ]
}

 The dataset includes 711 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030598-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23cpju
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blattella germanica (Linnaeus, 1767)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 110 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030600-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zp6gj
title: Occurrence Download

description: A dataset containing 37291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Living Specimen, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bacillariophyta"
 ]
}

 The dataset includes 37291 records from 299 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001291-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbhgvx
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((35.33998 -15.0604,35.26544 -15.06653,35.18273 -15.18089,35.22358 -15.20132,35.31446 -15.19621,35.32977 -15.1717,35.3696 -15.1523,35.38185 -15.16762,35.42678 -15.17374,35.4758 -15.17987,35.52175 -15.14413,35.54523 -15.14617,35.52175 -15.18804,35.53911 -15.21459,35.50847 -15.29322,35.52685 -15.30445,35.52175 -15.32691,35.52787 -15.36674,35.54421 -15.38308,35.58403 -15.36776,35.59425 -15.39227,35.60752 -15.46068,35.66266 -15.46579,35.69023 -15.4954,35.67492 -15.57199,35.70146 -15.59241,35.7515 -15.55054,35.8046 -15.5097,35.8577 -15.52501,35.87199 -15.46579,35.83013 -15.42086,35.86382 -15.40554,35.88016 -15.37389,35.86485 -15.33202,35.82706 -15.30343,35.82094 -15.26054,35.79643 -15.22991,35.84442 -15.22072,35.84851 -15.17885,35.86791 -15.14822,35.89854 -14.99811,35.83115 -14.96543,35.73312 -14.95931,35.5871 -15.0073,35.42168 -15.05121,35.33998 -15.0604))",
 "TaxonKey is Hippopotamus amphibius Linnaeus, 1758",
 "Year 2012-2024"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001292-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynfpym
title: Occurrence Download

description: A dataset containing 1286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Living Specimen, Occurrence evidence)",
 "TaxonKey is Chrysophyta"
 ]
}

 The dataset includes 1286 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001293-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2n4tfw
title: Occurrence Download

description: A dataset containing 187594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ECU.1_1",
 "IucnRedListCategory is one of (LC, VU, CR, EN, NT, NE, DD)"
 ]
}

 The dataset includes 187594 records from 265 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001281-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vbean
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((35.33998 -15.0604,35.26544 -15.06653,35.18273 -15.18089,35.22358 -15.20132,35.31446 -15.19621,35.32977 -15.1717,35.3696 -15.1523,35.38185 -15.16762,35.42678 -15.17374,35.4758 -15.17987,35.52175 -15.14413,35.54523 -15.14617,35.52175 -15.18804,35.53911 -15.21459,35.50847 -15.29322,35.52685 -15.30445,35.52175 -15.32691,35.52787 -15.36674,35.54421 -15.38308,35.58403 -15.36776,35.59425 -15.39227,35.60752 -15.46068,35.66266 -15.46579,35.69023 -15.4954,35.67492 -15.57199,35.70146 -15.59241,35.7515 -15.55054,35.8046 -15.5097,35.8577 -15.52501,35.87199 -15.46579,35.83013 -15.42086,35.86382 -15.40554,35.88016 -15.37389,35.86485 -15.33202,35.82706 -15.30343,35.82094 -15.26054,35.79643 -15.22991,35.84442 -15.22072,35.84851 -15.17885,35.86791 -15.14822,35.89854 -14.99811,35.83115 -14.96543,35.73312 -14.95931,35.5871 -15.0073,35.42168 -15.05121,35.33998 -15.0604))",
 "TaxonKey is Hippopotamus amphibius Linnaeus, 1758"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001295-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48512/xcv8501093
title: Digital Archive of Huhugam Administrative Usage Data

description: tDAR Administrative usage data from the DAHA collection, produced for a manuscript titled The Digital Archive of Huhugam Archaeology and the Reuse of Archaeological Information 


The reuse of information derived from past archaeological investigations is integral to contemporary research practices. Despite this, the archiving practices of many (but not all) scholars, cultural resource managers, and public agencies often fall short of meeting standard best practices. This limitation impedes the efficient and meaningful reuse of information in future research and management endeavors. To alleviate these archival and reuse concerns, the development of publicly available, secure, online archives is crucial to improving scholarly research, assisting in land-planning activities, and enhancing access to cultural heritage documents for Indigenous communities. In response to these challenges and in collaboration with state, federal, and tribal partners, the Center for Digital Antiquity (CDA) established the Digital Archive of Huhugam Archaeology (DAHA). This archive, preserved in the Digital Archaeological Record (tDAR), consolidates information from over 90-years of archaeological investigations in central and southern Arizona. This paper outlines the process of constructing the archive, emphasizing the importance of reuse and detailing the current methods for assessing reuse, distinguishing between quantity and quality. While metrics such as page views and downloads are commonly employed, we believe that these used on their own fails to adequately capture the true value of reused data to academics, cultural resource managers, Arizona’s Indigenous communities, and the public.
DOI: 10.15468/dl.xvue4c
title: Occurrence Download

description: A dataset containing 246049 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abies alba Mill.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 246049 records from 912 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001286-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mecs3p
title: Occurrence Download

description: A dataset containing 37378 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus sylvestris var. sylvestris"
 ]
}

 The dataset includes 37378 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001296-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14328627
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.6084/m9.figshare.30962893
title: Phineas Gage, in his own time: A medical case reconstructed from newly unearthed nineteenth-century archives

description: Phineas P. Gage’s 1848 brain injury is a seminal case in the history of neuroscience, yet its nineteenth-century media coverage has remained largely unexplored. We adopted a novel methodological approach, systematically screening newly digitized newspaper archives (Newspapers.com<sup>™</sup>, Google News Archives, and Chronicling America) for articles published in the United States between 1848 and 1899, retrieving a total of 831 reports. Analysis revealed that most coverage (72.44%) occurred posthumously, questioning the relevance of later accounts and the prominence of Gage’s case during his own lifetime. Despite numerous reprints, misspellings, and inaccuracies, previously unknown primary sources were identified, providing new evidence of Gage’s functional recovery, occasional exhibitions in New England, early references in European journals, and unpublished photographs and drawings of his skull and tamping iron. Accounts from 1848–1849, in particular, offer detailed insights into the immediate aftermath and public reception of the accident. These findings highlight the intersections between the history of medicine and media, challenging assumptions about the uniqueness of Gage’s case and illustrating how nineteenth-century newspapers shaped public perceptions of brain injury. Digitized archives now provide an unprecedented opportunity to reassess historical cases and improve the accuracy of information regarding Phineas P. Gage’s life.
DOI: 10.6084/m9.figshare.30962893.v1
title: Phineas Gage, in his own time: A medical case reconstructed from newly unearthed nineteenth-century archives

description: Phineas P. Gage’s 1848 brain injury is a seminal case in the history of neuroscience, yet its nineteenth-century media coverage has remained largely unexplored. We adopted a novel methodological approach, systematically screening newly digitized newspaper archives (Newspapers.com<sup>™</sup>, Google News Archives, and Chronicling America) for articles published in the United States between 1848 and 1899, retrieving a total of 831 reports. Analysis revealed that most coverage (72.44%) occurred posthumously, questioning the relevance of later accounts and the prominence of Gage’s case during his own lifetime. Despite numerous reprints, misspellings, and inaccuracies, previously unknown primary sources were identified, providing new evidence of Gage’s functional recovery, occasional exhibitions in New England, early references in European journals, and unpublished photographs and drawings of his skull and tamping iron. Accounts from 1848–1849, in particular, offer detailed insights into the immediate aftermath and public reception of the accident. These findings highlight the intersections between the history of medicine and media, challenging assumptions about the uniqueness of Gage’s case and illustrating how nineteenth-century newspapers shaped public perceptions of brain injury. Digitized archives now provide an unprecedented opportunity to reassess historical cases and improve the accuracy of information regarding Phineas P. Gage’s life.
DOI: 10.5281/zenodo.18080824
title: Silicate chemical weathering flux in the Indo-Pacific Convergence Zone during Quaternary glacials

description: The dataset titled " Silicate chemical weathering flux in the Indo-Pacific Convergence Zone during Quaternary glacials" documents the outputs of silicate chemical weathering flux in the Indo-Pacific Convergence Zone (IPCZ) based on the GEOCLIM-Dynsoil-Steady-State model, after applying deep learning.
DOI: 10.5281/zenodo.18080823
title: Silicate chemical weathering flux in the Indo-Pacific Convergence Zone during Quaternary glacials

description: The dataset titled " Silicate chemical weathering flux in the Indo-Pacific Convergence Zone during Quaternary glacials" documents the outputs of silicate chemical weathering flux in the Indo-Pacific Convergence Zone (IPCZ) based on the GEOCLIM-Dynsoil-Steady-State model, after applying deep learning.
DOI: 10.15468/dl.ndqack
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Chinese Taipei, China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "VerbatimScientificName is Cupressus gigantea"
 ]
}

 The dataset includes 27 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068281-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qe2yvk
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Chinese Taipei, China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "VerbatimScientificName is Cupressus torulosa"
 ]
}

 The dataset includes 38 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068282-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.