cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26880205.v1
title: CNN_Datasets_20210411

description: This dataset contains 1,523 samples, mostly of white plaster sculptures. There are 30 images in total: 28 fringe images and 2 speckle images. The fringe images have frequencies of 1, 4, 20, 61, 70, and 80 (doubled). The first five frequencies use a 4-step phase-shifting algorithm, and the last one uses an 8-step phase-shifting algorithm. The dataset also includes calibration data for the system and camera. If you want to use the calibration details to reconstruct 3D or depth information, please reach out to us:Hieu Nguyen, PhD: 29nguyen@cua.eduZhaoyang Wang, PhD: wangz@cua.eduIf you use this dataset in your research, please consider citing our related publications.H. Nguyen, Y. Wang, and Z. Wang, "Single-Shot 3D Shape Reconstruction Using Structured Light and Deep Convolutional Neural Networks," Sensors 20, 3718, 2020.H. Nguyen and Z. Wang, "Accurate 3D Shape Reconstruction from Single Structured-Light Image via Fringe-to-Fringe Network," Photonics 8, 459, 2021.H. Nguyen, E. Novak, and Z. Wang, "Accurate 3D reconstruction via fringe-to-phase network," Measurement 190, 110663, 2022.AH. Nguyen, K. Ly, C. Li, and Z. Wang, "Single-shot 3D shape acquisition using a learning-based structured light technique," Appl. Opt. 61, 8589-8599, 2022.AH. Nguyen, O. Rees, and Z. Wang, "Learning-based 3D imaging from single structured-light image," Graph. Models 126, 101171, 2023.A.H. Nguyen, K. Ly, V.K. Lam, and Z. Wang, "Generalized fringe-to-phase framework for single-shot 3D reconstruction integrating structured light with deep learning," Sensors 23, 4209, 2023.A.H. Nguyen and Z. Wang, "Single-shot 3D Reconstruction via nonlinear Fringe Transformation: Supervised and Unsupervised Learning Approaches," Sensors 24, 3246, 2024.
DOI: 10.6084/m9.figshare.27290724.v1
title: Transcripts

description: Transcripts of qualitative in-depth interviews.
DOI: 10.6084/m9.figshare.28146974.v1
title: Data for article "Sampling Electronic Fock States using Determinant Quantum Monte Carlo"

description: MATLAB data to plot Fig.3, 4, 5, and 6 of article "Sampling Electronic Fock States using Determinant Quantum Monte Carlo" (https://arxiv.org/abs/2403.18246).
DOI: 10.6084/m9.figshare.10006541.v3
title: Amp_res_Ecoli_data

description: forward raw reads - E.coli amp resistant
DOI: 10.6084/m9.figshare.14423690.v3
title: Diffuse fraction distributions 1901-2017 in support of carbon cycle modelling

description: This diffuse fraction dataset offers 6-hourly distributions of the diffuse fraction of surface shortwave fluxes over the period 1901-2017. Radiative transfer calculations are based on monthly-averaged distributions of tropospheric and stratospheric aerosol optical depth, and 6-hourly distributions of cloud fraction. Methods follow those described in the Methods section of Mercado et al. (doi:10.1038/nature07949, 2009), but with updated input datasets. <br><br>The time series of speciated tropospheric aerosol optical depth is taken from the historical and RCP8.5 simulations by the HadGEM2-ES climate model (Bellouin et al., doi:10.1029/2011JD016074, 2011). To correct for biases in HadGEM2-ES, tropospheric aerosol optical depths are scaled over the whole period to match the global and monthly averages obtained over the period 2003-2017 by the CAMS Reanalysis of atmospheric composition (Inness et al., doi:10.5194/acp-19-3515-2019, 2019), which assimilates satellite retrievals of aerosol optical depth. <br><br>The time series of stratospheric aerosol optical depth is taken from the climatology by Sato et al. (doi:10.1029/93JD02553, 1993), which has been updated to 2012. Years 2013-2017 are assumed to be background years so replicate background year 2010. That assumption is supported by the Global Space-based Stratospheric Aerosol Climatology time series (1979-2016; Thomason et al., doi:10.5194/essd-10-469-2018, 2018). <br><br>The time series of cloud fraction is obtained by scaling the 6-hourly distributions simulated in the Japanese Reanalysis (JRA; Kobayashi et al., doi:10.2151/jmsj.2015-001, 2015) to match the monthly-averaged cloud cover in the CRU TS v4.03 dataset (Harris et al. doi:10.1038/s41597-020-0453-3, 2020). <br><br>Surface radiative fluxes account for aerosol-radiation interactions from both tropospheric and stratospheric aerosols, and for aerosol-cloud interactions from tropospheric aerosols, except mineral dust. Tropospheric aerosols are also assumed to exert interactions with cloud. The radiative effects of those aerosol-cloud interactions are assumed to scale with the radiative effects of aerosol-radiation interactions of tropospheric aerosols, using regional scaling factors derived from HadGEM2-ES. <br><br>Diffuse fraction is assumed to be 1 in cloudy sky. Atmospheric constituent other than aerosols and clouds are set to a constant standard mid-latitude summer atmosphere, but their variations do not affect the diffuse fraction of surface shortwave fluxes.<br><br>
DOI: 10.6084/m9.figshare.16823398.v1
title: Interview Materials

description: Interview Documents
DOI: 10.6084/m9.figshare.21843356.v1
title: Metals in coastal seagrass habitats: A systematic quantitative literature review

description: Seagrasses provide crucial ecosystem services in the coastal environment, but are under increasing threat associated with anthropogenic activities. Seagrass meadows effectively trap suspended sediment, a key vector for trace metal transport, by altering local hydrodynamic conditions around their leaves and stems. As a result, seagrass meadows often have different geochemical sediment characteristics compared to adjacent bare sediments and may accumulate higher concentrations of trace metals. The aim of this systematic review was to identify research trends and knowledge gaps in the relationships between metals and seagrasses. The systematic search of the literature identified a total of 191 relevant articles. Although seagrasses have a broad geographic distribution, the highest diversity and endemism exists in the Indo-Pacific region, yet most studies (40%) were conducted in the Mediterranean Sea. There were also taxonomic gaps with some common species groups, including <i>Amphibolis</i> and <i>Thalassodendron</i> spp., being poorly studied. The reviewed studies examined the relationship between seagrass and 39 metal elements. There were no studies examining rare-earth elements (REEs) or platinum-group elements (PGEs), both of which are critical classes of metals in emerging technologies. Furthermore, the review determined that all 191 studies focused on the impact of metals on seagrasses, while only six also considered the effect of seagrasses on metal geochemistry in sediments. We conclude that further research is necessary to address these key gaps in knowledge to better understand the role(s) of seagrasses in the distribution, immobilization, and release of trace metals in coastal ecosystems.
DOI: 10.6084/m9.figshare.16834663.v1
title: Appendix IV Notebook htmls and QC

description: Notebook htmls and QC for study "HIV-1 provirus transcription and translation in macrophages differs from macrophages containing pre-integrated cDNA complexes and requires E2F transcriptional programs"
DOI: 10.6084/m9.figshare.15147642.v4
title: The genetic structure of the Turkish population reveals high levels of variation and admixture

description: Turkish Variome contains allele frequencies of 46,739,479 variants of 3,362 unrelated Turkish individuals.<br>Turkish reference panel for imputation contains phased haplotypes of 773 whole-genome sequenced unrelated Turkish individuals.<br>Plink files of 1,460 origin-known Turkish individuals. These files contain 423,261 variants that were used for population structure analyses.<br>
DOI: 10.6084/m9.figshare.7996184.v3
title: Results_Comparative_Study_Colection.xlsx

description: This is the dataset provided by the aforementioned authors of a heuristic based comparative evaluation process between two Playability assessment techniques.<br>In this dataset you can find raw data from the evaluation process and data evaluation made by the authors. Moreover, a evaluation by knowledge levels can be checked and how they were interpreted.
DOI: 10.6084/m9.figshare.20191634.v1
title: Supplementary Material for: Antenatal Magnesium Sulfate for Preterm Neuroprotection: A Single-Center Experience from Kuwait Tertiary NICU

description: <b><i>Objectives:</i></b> The study aimed to evaluate the impact of antenatal exposure of magnesium sulfate (MgSO<sub>4</sub>) on short- and long-term outcomes in preterm neonates born less than 32 weeks gestation. <b><i>Methods:</i></b> Single-center retrospective cohort study of 229 neonates born between 24 and 32 weeks gestation was conducted from January 2018 through December 2018 in a level III neonatal care unit in Kuwait. Antenatal MgSO<sub>4</sub> exposure was collected from the medical records, and the indication was for neuroprotection effect. Brain MRI was done on 212 neonates (median gestational age 36 weeks), and brain injury was assessed using the Miller’s score. Neurodevelopmental outcome was assessed by Bayley-III scales of infant development at 36 months corrected age (<i>N</i> = 146). The association of exposure to MgSO4 with brain injury and neurodevelopmental outcomes was examined using multivariable regression analysis adjusting for gestational age at MRI and variables with <i>p</i> value &lt;0.05 on univariate analysis. <b><i>Results:</i></b> Among the 229 neonates, 47 received antenatal MgSO<sub>4</sub>. There were no differences between the groups in gestational age and birth weight. MgSO<sub>4</sub> exposure was not associated with an increased risk of necrotizing enterocolitis, chronic lung disease, retinopathy of prematurity, and mortality. The incidence of cerebellar hemorrhage was significantly less in the MgSO<sub>4</sub> group (0% vs. 16%, <i>p</i> value = 0.002). Neonates who received MgSO<sub>4</sub> had lower risks of grade 3–4 intraventricular hemorrhage (IVH) adjusted OR 0.248 (95% CI: 0.092, 0.66), <i>p</i> = 0.006; moderate-severe white matter injury (WMI) adjusted odd ratio 0.208 (95% CI: 0.044, 0.96), <i>p</i> = 0.046; and grade 3–4 IVH and/or moderate-severe WMI adjusted OR 0.23 (95% CI: 0.06, 0.84), <i>p</i> = 0.027. Neurodevelopmental assessment at 36 months corrected age showed better motor (adjusted beta coefficient 1.08 [95% CI: 0.099, 2.06]; <i>p</i> = 0.031) and cognitive composite scores (adjusted beta coefficient 1.29 [95% CI: 0.36, 2.22]; <i>p</i> = 0.007) in the MgSO<sub>4</sub> group. <b><i>Conclusion:</i></b> Antenatal exposure to MgSO<sub>4</sub> in preterm neonates less than 32 weeks was independently associated with lower risks of brain injury and better motor and cognitive outcomes.
DOI: 10.6084/m9.figshare.27988565.v1
title: Interview Transcript.docx

description: The interview Transcript document comprises 10 interviews with HR Professionals, which focused on identifying the challenges faced and the strategies implemented by HR Professionals to overcome attrition-related issues in the organization. The main themes identified include Compensation Management, Career pathways, Employee Experiences, Supportive Work Environment, Future Readiness, and Strategies. The Global Themes identified includes Employee Value Preposition and Proactive Retention Measures. <br>
DOI: 10.6084/m9.figshare.28741994.v3
title: Data repository for Metabolic activity and nutrient availability drive phosphorus and ammonium uptake in river biofilms under contrasting light conditions

description: Data repository for:<b>Metabolic activity and nutrient availability drive phosphorus and ammonium uptake in river biofilms under contrasting light conditions</b>This repository accompanies the manuscript submitted to <b>Limnology and Oceanography </b>and contains all datasets and R scripts used to perform the analyses described in the study.---📁 Contents of this repository:<br>1. <b>R code biofilm uptake.R</b>: R script used to perform all statistical analyses described in the study, including GLMM fitting, model selection, and model averaging.2. <b>Biofilm nutrient uptake.csv</b>: CSV file containing nutrient uptake rates (SRP and NH₄⁺) for all incubations conducted under light and dark conditions.3. <b>Model selection.csv</b>: CSV file used to analyze spatial and temporal variability in physicochemical and biofilm structural variables, and to explore their influence on biofilm nutrient uptake using model selection.4. <b>Variable legend.csv</b>: CSV file listing and describing all variables in "Model_selection.csv", including full variable names, units, and acronyms.5. <b>Light-Dark uptake ratio.csv</b>: CSV file containing the light–dark uptake ratios for NH₄⁺ and SRP, averaged per site and sampling date.6. <b>NH4-SRP uptake ratio.csv</b>: CSV file containing the NH₄⁺:SRP molar uptake ratios calculated for incubations with dual nutrient additions.7. <b>Random structure selection.csv</b>: CSV file used to explore random-effect structures (Site, Time, Site + Time, Site × Time) using global models prior to model selection.---Please cite this repository if you use these data or scripts in your own research.
DOI: 10.6084/m9.figshare.24182469.v2
title: Data of Haarp campaing around Siria and Turkey earthquake

description: Tweets around haarp disinformation in 2023 at earthquakes in Siria and Turkey in several languages.
DOI: 10.6084/m9.figshare.21900948.v2
title: blood_RNA.h5ad

description: scRNA-seq of peripheral blood leukocytes (PBLs) from healthy controls and patients with ulcerative colitis on aminosalicylates or vedolizumab. Seurat (.rds) and anndata (h5ad) objects uploaded.Addendum 4/24/25: added blood_RNA_counts_processed.h5ad with separate "counts" and "processed" layers. adata.X is processed.
DOI: 10.6084/m9.figshare.28792298.v1
title: Introduced Fish Threaten Amphibians

description: Alpine lakes are naturally fish-poor or ﬁsh-free ecosystems that have received numerous non-native fish introductions globally in recent decades. Studies have demonstrated that alien fish have significant negative impacts on aquatic organisms, particularly amphibians, which are highly susceptible to habitat alterations. However, studies from Asia remain scarce, particularly in plateau lake ecosystems. In southwest China, fish have been extensively introduced through alien and intra-regional translocation for purposes including religious release, tourism, and aquaculture. In this study, we used environmental DNA techniques to survey fish and amphibian species composition and abundance at 63 sampling locations across southwest China between 2022 and 2023. We examined the effects of fish introductions on amphibian richness and occurrence using generalized linear models, and further evaluated the impact magnitude of fish from different sources. We then quantified the species co-occurrence using probabilistic species co-occurrence analysis. Next, we evaluated the impact of fish richness from different sources on community composition using non-metric multidimensional scaling, and assessed community similarity and assembly mechanism through the Raup-Crick index and modified stochasticity ratio. Ultimately, we explored the predation behavior of selected pairs of translocated fish and native amphibian to verify the cause of negative co-occurrence. Our results showed that non-native fish predominantly inhabit lentic habitats, with translocated species comprising a substantial proportion. Amphibian richness and occurrence were negatively correlated with fish richness. Introduced fish increased amphibian community similarity and shifted community assembly toward stochastic dominance. Translocated <i>Carassius auratus</i> exhibited strong predation on <i>Rhacophorus dugritei</i> tadpoles, significantly reducing its occurrence. These impacts were largely driven by intra-regional fish translocation. Our findings highlight the critical need to consider intra-regional fish movements in conservation strategies. This study provides key insights for managing introduced fish populations and protecting threatened and endemic amphibians in alpine lake ecosystems of southwest China and similar highland regions worldwide.
DOI: 10.6084/m9.figshare.10250561.v1
title: Nexus of grazing management with plant and soil properties in northern China grasslands

description: The dataset is to document the effect of grazing intensity on plant community attributes (vegetation coverage, aboveground biomass, root biomass, plant diversity) and soil physiochemical properties (SOC, soil N and P, soil moisture, C:N ratio, and soil pH) in northern China grasslands grasslands
DOI: 10.6084/m9.figshare.25104116.v2
title: Data and code for project "The ecological relevance of flagellar motility in soil bacterial communities"

description: Repository containing the necessary files and code to replicate the results presented in study "The ecological relevance of flagellar motility in soil bacterial communities". This work investigated the prevalence of flagellar motility across the bacterial tree of life using gene-based predictive approaches, and identified the life history strategies associated with this trait. Using metagenomic data, the study investigated the prevalence of flagellar motility as a community-aggregated trait across soil carbon gradients, and identified a consistent association between flagellar motility and soil carbon availability.
DOI: 10.6084/m9.figshare.3202120.v1
title: Measuring Outcomes in a Community Resilience Program: A New Metric for Evaluating Results at the Household Level

description: This dataset contains responses to the Public Health Response to Emergent Threats Survey (PHRETS), a population-level survey periodically fielded in Los Angeles County to guide disaster planning. Data contains responses from 4700 respondents on the variables used in our manuscript. All demographic data has been removed to ensure that all respondents were appropriately de-identified.
DOI: 10.6084/m9.figshare.13128434.v1
title: Supplementary Material for: Prognostic Impact of the Pulmonary Artery Pulsatility Index in Patients with Chronic Heart Failure and Severe Mitral Regurgitation Undergoing Percutaneous Edge-to-Edge Repair

description: <b><i>Background:</i></b> Pulmonary artery (PA) pulsatility index (PAPi), calculated as (PA systolic pressure – PA diastolic pressure)/right atrial pressure, emerged as a novel predictor of right ventricular failure in patients with acute inferior myocardial infarction, advanced heart failure, and severe pulmonary hypertension. However, the prognostic utility of PAPi in transcatheter mitral valve repair (TMVR) using the MitraClip® system has never been tested. <b><i>Objective:</i></b> To assess the prognostic impact of PAPi in patients with severe functional mitral regurgitation (MR) and chronic heart failure (CHF) undergoing TMVR. <b><i>Methods:</i></b> Consecutive patients with severe functional MR (grade 3+ or 4+) and CHF who underwent successful TMVR (MR ≤2+ at discharge) were enrolled and divided into 3 groups according to PAPi (A: low PAPi ≤2.2; B: intermediate PAPi 2.21–3.99; C: high PAPi ≥4.0). The primary endpoint was a composite of all-cause mortality and rehospitalization due to CHF during a mean follow-up period of 16 ± 4 months. The impact of PAPi on prognosis was assessed by a receiver-operating characteristic (ROC) analysis and a multivariable Cox proportional hazard regression analysis investigating independent predictors for outcome. <b><i>Results:</i></b> 78 patients (A: <i>n</i> = 27, B: <i>n</i> = 28, C: <i>n</i> = 23) at high operative risk (logistic EuroSCORE [European System for Cardiac Operative Risk Evaluation] 18.8 vs. 21.5 vs. 20.6%; nonsignificant) were enrolled. Mean PAPi was 1.6 ± 0.41 vs. 2.9 ± 0.53 vs. 6.8 ± 3.5; <i>p</i> &lt; 0.001). Patients with low PAPi showed significantly higher rates of early rehospitalization for heart failure at the 30-day follow-up (14.9 vs. 7.1 vs. 4.3%; <i>p</i> = 0.04). In the long term, a significantly lower event-free survival for the combined primary endpoint was observed in the low PAPi group (44.4 vs. 25.0 vs. 20.3%; log-rank <i>p</i> = 0.016). ROC curve analysis revealed that optimal sensitivity and specificity were achieved using a PAPi cutoff of 2.46 (sensitivity 83%, specificity 78.3%, area under the curve 0.82 [0.64–0.99]; <i>p</i> = 0.01). In Cox regression analysis, PAPi ≤2.46 was an independent predictor for the combined primary endpoint (hazard ratio 2.85; 95% confidence interval 1.15–7.04; <i>p</i> = 0.023). <b><i>Conclusions:</i></b> PAPi is strongly associated with clinical outcome among patients with CHF and functional MR undergoing TMVR. A PAPi value ≤2.46 predicts a worse prognosis independent of other important clinical, echocardiographic, and hemodynamic factors. Therefore, PAPi may serve as a new parameter to improve patient selection for TMVR.
DOI: 10.6084/m9.figshare.19858441.v2
title: PDXA Dataset

description: The PDXA dataset contains the CAN-Bus signals for the driving scene classification modeling presented in the letter 'Contextual Driving Scene Perception from Anonymous Vehicle Bus Data for Automotive Applications'. The signals measurement are all labeled and subsampled at 1 Hz. <br>
DOI: 10.6084/m9.figshare.20374473.v1
title: Supplementary Material for: Efficacy and safety of bevacizumab in pretreated metastatic breast cancer: a systematic review and meta-analysis

description: Background: The use of bevacizumab in patients with previously treated metastatic breast cancer (MBC) is controversial. This meta-analysis was carried out to evaluate the efficacy and safety of the regimen including bevacizumab among patients with pretreated MBC. Methods: We systematically searched the PubMed, the Cochrane Library, Web of Science, and Embase databases for randomized controlled trials (RCTs) evaluating bevacizumab combined with chemotherapy for previously treated MBC patients. The primary endpoints were progression-free survival (PFS) and objective response rate (ORR). The secondary endpoints were overall survival (OS) and toxicity. The risk of bias was assessed by the Cochrane Collaboration tool. The pooled hazard ratio (HR) and risk ratio (RR) with 95% confidence intervals (CIs) were calculated for the identified studies. This study was performed following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) checklist. Results: Four studies involving 1640 individuals were included. Pooling results showed that the PFS of bevacizumab-containing groups (HR 0.82; 95% CI 0.73–0.93, P=0.002) was significantly better than that of the control groups, especially when bevacizumab was administered as the second-line treatment for patients with human epidermal growth factor receptor 2 (HER2)-negative MBC (HR 0.77; 95%CI 0.66–0.88, P=0.0002). The ORR in the bevacizumab-containing group was superior to that in the control group, both in the general (RR 1.45; 95%CI 1.18–1.78, P=0.0004) and HER2-negative groups (RR 1.30; 95%CI 1.03–1.63, P=0.03). However, no significant effect on OS was demonstrated for the addition of bevacizumab to the second-line treatment for HER2-negative MBC (HR 0.93; 95%CI 0.79–1.10, P=0.39). Comparatively, proteinuria was more common in the bevacizumab-containing group. In addition, the application of bevacizumab tended to result in therapy discontinuation due to treatment-related toxicity. Conclusions: Bevacizumab-containing chemotherapy, in light of its favorable effects on clinical outcomes, could be a preferred therapeutic option for patients with MBC, for whom the disease must be rapidly relieved. Further studies are warranted for exploring the advantageous patients with the receipt of bevacizumab in multiline treatment.