cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14284/723
title: AIS-annotated Hydrophone Recordings for Vessel Classification

description: This dataset contains 10-second underwater acoustic recordings labeled with Automatic Identification System (AIS) data, collected from the Belgian part of the North Sea (BPNS). The data were gathered to develop machine learning models for vessel activity classification and distance prediction. Hydrophones were deployed at two stations, Gardencity and Grafton, near busy shipping routes, capturing vessel-generated sounds. AIS data was used to annotate these recordings with vessel position, speed, type, and activity. The dataset includes 27 524 labeled audio segments recorded over 116 days and is split into training, validation, and testing subsets.
description: This dataset was developed to support research on vessel monitoring using underwater acoustic recordings labeled with AIS data. It was created by researchers from VLIZ (Flanders Marine Institute) and collaborators to improve machine learning models for vessel classification and distance prediction. The dataset consists of 10-second underwater sound recordings, collected at two hydrophone stations, Gardencity and Grafton, located in the Belgian part of the North Sea (BPNS). These stations were strategically placed near major shipping routes to capture vessel-generated noise. Vessel positions, speeds, types, and activities were extracted from AIS-Hub data and linked to each recording, providing labeled data for model training. The recordings were collected over 116 days, resulting in 27 524 labeled audio segments. Each segment is accompanied by metadata, including AIS-derived vessel information and the hydrophone station. The dataset splits (training, validation, and testing) are provided as separate files in the data_split folder to ensure structured and reproducible dataset usage for machine learning applications. This dataset enables research in passive acoustic monitoring, vessel detection, and maritime traffic analysis, offering valuable data for studying human activity at sea.
DOI: 10.15468/dl.k8c3ds
title: Occurrence Download

description: A dataset containing 1516939 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gyps fulvus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1516939 records from 768 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027872-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26878867.v1
title: PVAN data

description: draft
DOI: 10.6084/m9.figshare.29958020
title: Data_files_wildlife_group_size

description: This folder contains the data files for the project "Human disturbance impacts on wildlife sociality and group sizes"
DOI: 10.6084/m9.figshare.29958020.v1
title: Data_files_wildlife_group_size

description: This folder contains the data files for the project "Human disturbance impacts on wildlife sociality and group sizes"
DOI: 10.15468/dl.ucaz7x
title: Occurrence Download

description: A dataset listing the 2848 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "Geometry POLYGON((117.39212 5.77148,116.79323 4.8523,117.79862 4.35647,118.11216 4.34751,118.31819 4.52667,118.15695 4.6924,118.0808 4.91635,118.34507 5.09551,118.58355 4.98765,119.12999 5.13994,119.16582 5.29222,118.02815 5.91481,117.39212 5.77148))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2004-2025"
 ]
}

 The dataset's 2848 records were derived from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027881-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tasy9f
title: Occurrence Download

description: A dataset containing 16592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Thunbergia alata"
 ]
}

 The dataset includes 16592 records from 323 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027907-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jhhxd7
title: Occurrence Download

description: A dataset containing 5686 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "TaxonKey is Acacia saligna"
 ]
}

 The dataset includes 5686 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027909-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7pyyjh
title: Occurrence Download

description: A dataset containing 3000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Microhyla ornata"
 ]
}

 The dataset includes 3000 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027910-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14651950
title: Data analyzed for manuscript "Understanding Allosteric Stabilization of pMHC by Peptide Ligands Through Molecular Dynamics Simulations"

description: Description:

This dataset supplements the manuscript "Understanding Allosteric Stabilization of pMHC by Peptide Ligands Through Molecular Dynamics Simulations", and contains data tables generated through analysis of molecular dynamics simulations trajectories of peptide-free and peptide-loaded HLA-A*02:01 structures loaded with three different 10mer peptides (PDB IDs: 3UTQ, 5N1Y, 5C0F).

Please refer to the manuscript/publication for more details on the context of the study, and how these data were generated.

Simulation conditions:

Software: gromacs 2023.4

Force-field: AMBER99SB-ILDN 

Explicit solvent with neutralization with ions at 0.15M concentration.

Time step: 4fs time-step (HMR)

NPT ensemble (310K and 1 bar)

Repeats: 3

Simulation length: each repeat for 750 ns

Total simulation length: 9 microseconds

Short descriptions of data frames (.csv files):

df_rmsf_2024_12_30.csv: Root Mean Square Fluctuations (RMSFs) of alpha-carbons, following superposition of all alpha-carbon coordinates onto the initial conformation.

df_rmsf_pep_2024_12_29.csv: RMSFs of peptide alpha-carbons, following superposition of peptide-binding groove conformations onto the initial conformation.

df_cons_pairs_saved_2025_02_01.csv: "Consistent pairs" of residues exhibiting significantly similar interaction energies across replicas based on one-way ANOVA. In other words, pairs whose interaction energies did not differ significantly (p > 0.05) across replica simulations. p values are included as well.

df_sig_aff_pairs_loaded_2025_02_01.csv: Consistent pairs that showed statistically-significant (p < 0.05, Student’s t-test) energy shifts with an absolute interaction energy difference of 2 kcal/mol upon peptide binding toward attractive or repulsive ranges. p values are included as well.

df_bc_equil_2025_02_01.csv: Betweenness centralities (BCs) of each node (amino acids) in the constructed protein energy networks (PENs) in each conformation in each simulation trajectory.

df_bc_equil_cons_resids_2025_02_01.csv: Betweenness centralities, also including "consistent BC residues" with consistent betweenness centralities (BCs) across replica simulations. Identified using the same procedure described above for df_cons_pairs_saved_2025_02_01.csv. p values are included as well. If no p value is listed, there respective residue is not a consistent BC residue.

df_bc_sigaff_resids_2025_02_01.csv: Consistent BC residues with BC levels with statistically-significant BC shifts (p < 0.05, one-way ANOVA) upon peptide-binding. In other words, residues whose BCs did not differ significantly (p > 0.05) between peptide-free simulations and at least one peptide-loaded system simulation. p values are included as well.

 

Please note that the lowest floating point number that can be computed by the machine on which the analyses were run is -1.7976931348623157e+308. 

Hence, if you see a p value of zero (0.0) in any data frame, this means the real value is below this lower threshold.
DOI: 10.5281/zenodo.14651951
title: Data analyzed for manuscript "Understanding Allosteric Stabilization of pMHC by Peptide Ligands Through Molecular Dynamics Simulations"

description: Description:

This dataset supplements the manuscript "Understanding Allosteric Stabilization of pMHC by Peptide Ligands Through Molecular Dynamics Simulations", and contains data tables generated through analysis of molecular dynamics simulations trajectories of peptide-free and peptide-loaded HLA-A*02:01 structures loaded with three different 10mer peptides (PDB IDs: 3UTQ, 5N1Y, 5C0F).

Please refer to the manuscript/publication for more details on the context of the study, and how these data were generated.

Simulation conditions:

Software: gromacs 2023.4

Force-field: AMBER99SB-ILDN 

Explicit solvent with neutralization with ions at 0.15M concentration.

Time step: 4fs time-step (HMR)

NPT ensemble (310K and 1 bar)

Repeats: 3

Simulation length: each repeat for 750 ns

Total simulation length: 9 microseconds

Short descriptions of data frames (.csv files):

df_rmsf_2024_12_30.csv: Root Mean Square Fluctuations (RMSFs) of alpha-carbons, following superposition of all alpha-carbon coordinates onto the initial conformation.

df_rmsf_pep_2024_12_29.csv: RMSFs of peptide alpha-carbons, following superposition of peptide-binding groove conformations onto the initial conformation.

df_cons_pairs_saved_2025_02_01.csv: "Consistent pairs" of residues exhibiting significantly similar interaction energies across replicas based on one-way ANOVA. In other words, pairs whose interaction energies did not differ significantly (p > 0.05) across replica simulations. p values are included as well.

df_sig_aff_pairs_loaded_2025_02_01.csv: Consistent pairs that showed statistically-significant (p < 0.05, Student’s t-test) energy shifts with an absolute interaction energy difference of 2 kcal/mol upon peptide binding toward attractive or repulsive ranges. p values are included as well.

df_bc_equil_2025_02_01.csv: Betweenness centralities (BCs) of each node (amino acids) in the constructed protein energy networks (PENs) in each conformation in each simulation trajectory.

df_bc_equil_cons_resids_2025_02_01.csv: Betweenness centralities, also including "consistent BC residues" with consistent betweenness centralities (BCs) across replica simulations. Identified using the same procedure described above for df_cons_pairs_saved_2025_02_01.csv. p values are included as well. If no p value is listed, there respective residue is not a consistent BC residue.

df_bc_sigaff_resids_2025_02_01.csv: Consistent BC residues with BC levels with statistically-significant BC shifts (p < 0.05, one-way ANOVA) upon peptide-binding. In other words, residues whose BCs did not differ significantly (p > 0.05) between peptide-free simulations and at least one peptide-loaded system simulation. p values are included as well.

 

Please note that the lowest floating point number that can be computed by the machine on which the analyses were run is -1.7976931348623157e+308. 

Hence, if you see a p value of zero (0.0) in any data frame, this means the real value is below this lower threshold.
DOI: 10.15468/dl.3kyphs
title: Occurrence Download

description: A dataset containing 185556 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tursiops"
 ]
}

 The dataset includes 185556 records from 943 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027877-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kdvxlj
title: Occurrence Download

description: A dataset containing 6319161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brassicales"
 ]
}

 The dataset includes 6319161 records from 2431 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006131-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6gehh
title: Occurrence Download

description: A dataset containing 628 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Fiji",
 "Depth is greater than or equal to 1000.0m",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 628 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006070-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25505/fiz.icsd.cc2n6vb2
title: CSD 2449444: Experimental Crystal Structure Determination

description: Related Article: Ryoji Tanaka|2025|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/wdg-n9x-t8k
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zaa-emf-3jp
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/elx-q18-x6k
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eg8-vyy-mft
title: Voacanga Thouars

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qh2-7jw-tc2
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3br-arr-tz4
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a71-rjb-zky
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g7f-mat-39k
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zvg-7kd-ykw
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.6xxb2v
title: Occurrence Download

description: A dataset containing 275 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.79538 -41.11956,-70.97153 -41.11956,-70.97153 -36.6855,-74.79538 -36.6855,-74.79538 -41.11956))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Oligoryzomys longicaudatus (Bennett, 1832)",
 "Year 2005-2025"
 ]
}

 The dataset includes 275 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012809-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29771489
title: RF results (Random Forest)

description: Random forest results
DOI: 10.6084/m9.figshare.29771489.v1
title: RF results (Random Forest)

description: Random forest results
DOI: 10.15468/dl.htap8c
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caprimulgus concretus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 103 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085457-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26953705
title: Orthofinder for oyter genome

description: Cluster the oyster genes for identifying the single-copy gene.
DOI: 10.6084/m9.figshare.26953705.v1
title: Orthofinder for oyter genome

description: Cluster the oyster genes for identifying the single-copy gene.
DOI: 10.15468/dl.sw3r59
title: Occurrence Download

description: A dataset containing 19577 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum torvum Sw."
 ]
}

 The dataset includes 19577 records from 449 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002313-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmbdug
title: Occurrence Download

description: A dataset containing 657331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Myiopsitta monachus (Boddaert, 1783)"
 ]
}

 The dataset includes 657331 records from 179 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002305-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4gqmz
title: Occurrence Download

description: A dataset containing 1622 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pimelodendron Hassk."
 ]
}

 The dataset includes 1622 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010844-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6/0z0bve/ybsrut
title: NHFR_08600-08640.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.25346/s6/0z0bve/ciawyw
title: NHFR_09090-09300.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.25346/s6/0z0bve/jlzp2k
title: NHFR_08160-08210.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.25346/s6/0z0bve/kovg31
title: NHFR_16250-16340.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.25346/s6/0z0bve/1uejl7
title: NHFR_08070-08150.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.25346/s6/0z0bve/uwo1k9
title: NHFR_08650-08750.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.25346/s6/0z0bve/1uvqk2
title: NHFR_10310-10579.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.25346/s6/0z0bve/juoq9t
title: NHFR_10110-10300.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.25346/s6/0z0bve/ssog8q
title: NHFR_07660-07930X.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.25346/s6/0z0bve/e0mitq
title: NHFR_15720-15830.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.25346/s6/0z0bve/bihvji
title: NHFR_15570-15710.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.25346/s6/0z0bve/lcclo2
title: NHFR_16720-16920X.pdf

description: NRDB Family Reconstitution Scanned Paper Forms
DOI: 10.5281/zenodo.18237561
title: Ctenitis (C.Chr.) C.Chr. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:32
DOI: 10.5281/zenodo.18237560
title: Ctenitis (C.Chr.) C.Chr. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:32
DOI: 10.15468/dl.3q3pfg
title: Occurrence Download

description: A dataset containing 371317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos, Arthurdendyus triangulatus, Cabomba caroliniana, Callosciurus finlaysonii, Cherax destructor, Corvus splendens, Crassula helmsii, Elodea densa, Eriocheir sinensis, Erythranthe guttata, Faxonius immunis, Faxonius juvenilis, Faxonius rusticus, Faxonius virilis, Gambusia affinis, Heracleum mantegazzianum, Heracleum persicum, Heracleum pubescens, Houttuynia cordata, , Impatiens glandulifera, Koenigia polystachya, Lagarosiphon major, Lepomis gibbosus, Limnoperna fortunei, Ludwigia grandiflora, Ludwigia peploides, Lysichiton americanus, Morone americana, Muntiacus reevesi, Myriophyllum aquaticum, Myriophyllum heterophyllum, Pacifastacus leniusculus, Petasites japonicus, Pontederia cordata, Procambarus acutus, Procambarus clarkii, Procambarus virginalis, Pseudorasbora parva, Pycnonotus cafer, Saururus cernuus, Sciurus carolinensis, Sciurus niger, Solenopsis invicta, Solenopsis richteri, Threskiornis aethiopicus, Vespa velutina, Zizania latifolia)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 371317 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007485-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sswrhg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"UZB.5.6_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007530-260108223611665/datasets/export for details.