cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16601274
title: Molecular characterization of the spectacled caiman (<i>Caiman crocodilus</i>) in the upper Magdalena River basin, Colombia: Demographic and phylogeographic insights

description: Maintenance of high levels of genetic diversity is crucial for the recovery of overexploited species and gaining knowledge of genetic diversity of natural populations is crucial to define effective conservation strategies. Spectacled caimans (<i>Caiman crocodilus</i>) were unsustainably exploited for decades in Colombia causing drastic population reductions with unknown effects on genetic structure. We molecularly characterized three spectacled caiman populations from the upper Magdalena River basin (UMRB), analyzing them within the context of the trans-Andean <i>C. c. fuscus sensu stricto</i> lineage, assessing nucleotide and genetic diversity, demographic history, and phylogeography at different scales. Seventeen of the 23 mitochondrial haplotypes currently described for Colombia are present in the UMRB, showing high levels of genetic diversity even when compared with the trans-Andean region (uncorrected genetic distances 0.00-0.87%). Mutational steps between closest haplotypes ranged from one to four while the most differentiated haplotypes were separated by 19 mutational steps across the whole trans-Andean region. Distribution of pairwise nucleotide differences and raggedness tests showed unimodal patterns of mismatch distribution curves fitting the sudden expansion model. Average time since demographic expansion for UMRB, Colombia, and trans-Andean region were inferred as 10,540, 7,591, and 7,071 years before present, respectively, placing the latest expansion close to the Pleistocene-Holocene boundary. Intriguingly, samples from Tolima were overall more related to those collected from Panama and Costa Rica (0.34 ± 0.15%) than the ones collected across Choco (0.45 ± 0.15%), Cauca (0.70 ± 0.09%), and Nariño (0.60 ± 0.14%) departments. We discuss our genetic findings in the context of the management policies carried out in the country during the last decades (unsustainable and sustainable use, and population restocking), evaluating the implications of these events for the genetic integrity and conservation of the species.
DOI: 10.6084/m9.figshare.16583646.v1
title: Genetic diversity and population structure of three <i>Hydroides</i> species (Sedentaria, Serpulidae) in the Persian Gulf and Gulf of Oman, with the possible indication of heteroplasmy

description: The Persian Gulf, an enclosed sea connected to the Gulf of Oman through the narrow Strait of Hormuz, is known as the world’s hottest sea. Owing to its harsh environmental conditions, genetic isolation has been proposed for the Gulf’s biota. During the present study, population genetic and phylogeographic analyses were carried out focusing on potential barriers to dispersal in some polychaete populations between the Persian Gulf and the Gulf of Oman. Ninety-three specimens from three defined spatial populations of three <i>Hydroides</i> species, <i>H</i>. <i>bulbosa</i>, <i>H</i>. <i>elegans</i> and <i>H</i>. <i>operculata</i>, were sequenced for regions of two nuclear ribosomal (18S and ITS2) and two mitochondrial (COI and Cyt-b) genes to compare the genetic structure among the sampled populations. Haplotype networks of the three species showed no significant genetic differentiation and were consistent with their geographic distribution patterns. Population genetic analyses such as pairwise F<sub>ST</sub>, nucleotide diversity and neutrality tests revealed some levels of intraspecific genetic diversities, suggesting different demographic histories. The genetic diversity observed in the more conservative genes (18S, Cyt-b, COI) in populations of <i>H</i>. <i>elegans</i> and <i>H</i>. <i>operculata</i> could reflect a more diverse genetic structure along their entire distribution range unlike the endemic species, <i>H. bulbosa</i> that presented a unique haplotype for each of those genes. Using Extended Bayesian Skyline plot analyses, populations of <i>H. bulbosa</i> and <i>H. operculata</i> showed signs of recent demographic expansion within the post-glacial transgression time frame of the Persian Gulf, while populations of <i>H. elegans</i> remained relatively constant. Another finding of the present study is the possible indication of heteroplasmy in <i>H</i>. <i>elegans</i> where two distinct mitochondrial lineages with about 11% of genetic divergence seem to coexist in the same individuals. We discuss also the alternative explanation of NUMTs (nuclear mitochondrial DNA), but regard it as substantially less likely.
DOI: 10.6084/m9.figshare.16955245
title: Genetic diversity in the <i>Diplosoma listerianum</i> complex (Ascidiacea: Didemnidae) from the Western Atlantic

description: (Received 19 January 2021; revised 27 September 2021; accepted 27 September 2021) <i>Diplosoma listerianum</i> has been re-described with more than 40 currently invalid names, but recent data suggests that some of those names may be valid. At least four distinct clades were recently revealed by molecular analysis using mitochondrial DNA (mtDNA). Yet, very few samples were analyzed from the western Atlantic, of which none were from the extensive Brazilian coast. Here, we analyze genetic diversity in <i>D. listerianum</i> in light of morphological data. We sequenced 55 samples from Brazil, Panama, Mexico, and the United States and analyzed them together with published data, to test whether local populations are part of widespread, known, clades or are native species hidden within this complex. Phylogenetic analysis found eight clades, three of which were different from the ones recovered before. Former clade A was split into two larger clades: clade A1 occurs in the western Atlantic, on the Pacific side of Panama and in South Africa; clade A2 occurs worldwide, with representatives found on every continent. Species delimitation analyses (ABGD, bPTP and GMYC) found 16 MOTUs, which suggests that those large clades are very diverse and may comprise more than one species. Diversity was greatest in Panama (6 clades) and Mexico (3 clades). Larval morphological characters were examined and described here. However, for only a few of the sequenced samples could fully grown larvae be obtained and phenotypic variation was large. Thus, larval morphology could not be used to diagnose molecular clades. <i>Diplosoma listerianum</i> remains a species complex, with evidence of ongoing speciation, and high genetic diversity, especially in the tropical western Atlantic. Fast-growing colonies, rapid life cycles, and amenability to cultivation in the laboratory indicate that this species can be a model for studies in speciation.
DOI: 10.6084/m9.figshare.17145687
title: Do colour-morphs of an amphidromous goby represent different species? Taxonomy of <i>Lentipes</i> (Gobiiformes) from Japan and Palawan, Philippines, with phylogenomic approaches

description: We document four male colour morphs of the Indo-Pacific goby genus <i>Lentipes</i> in Japan and the Philippines. Despite distinctive colour patterns, males of the different morphs could not be distinguished by meristic or morphometric characters. In contrast, co-occurring females had very similar colouration and could not be sorted into different types. We observed that the four types are not distinguished by mitochondrial genome sequences. On the other hand, genome-wide SNPs analysis clearly separated the four types, suggesting that they indeed represent four independent lineages. We considered that the four lineages could have diverged recently, and therefore, the sorting of mitochondrial haplotypes may not have been completed yet. One of the four lineages is identified as <i>L. armatus</i> Sakai & Nakamura, 1979, and the other three are described in this study as new species: <i>L. kijimuna</i> sp. nov., <i>L. bunagaya</i> sp. nov., and <i>L. palawanirufus</i> sp. nov. We observed that males display their species-specific body colourations during courtship. Pre-zygotic isolation due to female preferences for different male body colours is probably the primary mechanism of reproductive isolation between the four species. http://zoobank.org/urn:lsid:zoobank.org:pub:95C19A65-8907-48F6-AA0B-2ACF711C0297
DOI: 10.15468/qpepnj
title: Hygrocybe rimosa (Hygrophoraceae, Agaricales), a new poisonous species from southern China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Chao-Qun, Zhang, Ming, Li, Hai-Jiao, Huang, Hao, Deng, Wang-Qiu, Li, Ting, Luo, De- Jun, Li, Tai-Hui (2021): Hygrocybe rimosa (Hygrophoraceae, Agaricales), a new poisonous species from southern China. Phytotaxa 527 (4): 293-300, DOI: 10.11646/phytotaxa.527.4.7
DOI: 10.15468/rernts
title: Bauhinia darainensis Thulin & Nusb. (Fabaceae), a new species from northern Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Thulin, Mats, Nusbaumer, Louis, Gautier, Laurent (2014): Bauhinia darainensis Thulin & Nusb. (Fabaceae), a new species from northern Madagascar. Candollea 69 (2): 135-139, DOI: 10.15553/c2014v692a4
DOI: 10.25810/v575-3r57.37
title: Japanese Newspaper Coverage of Climate Change or Global Warming, 2000-2021 - November 2021

description:         The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5517/ccdc.csd.cc285h10
title: CCDC 2090641: Experimental Crystal Structure Determination

description: Related Article: Narayan Ch. Jana, Pravat Ghorai, Paula Brandäo, Parbati Bandyopadhyay, Amrita Saha, Antonio Frontera, Anangamohan Panja|2022|Inorg.Chim.Acta|531|120702|doi:10.1016/j.ica.2021.120702
DOI: 10.5517/ccdc.csd.cc285h21
title: CCDC 2090642: Experimental Crystal Structure Determination

description: Related Article: Narayan Ch. Jana, Pravat Ghorai, Paula Brandäo, Parbati Bandyopadhyay, Amrita Saha, Antonio Frontera, Anangamohan Panja|2022|Inorg.Chim.Acta|531|120702|doi:10.1016/j.ica.2021.120702
DOI: 10.5517/ccdc.csd.cc285h32
title: CCDC 2090643: Experimental Crystal Structure Determination

description: Related Article: Narayan Ch. Jana, Pravat Ghorai, Paula Brandäo, Parbati Bandyopadhyay, Amrita Saha, Antonio Frontera, Anangamohan Panja|2022|Inorg.Chim.Acta|531|120702|doi:10.1016/j.ica.2021.120702
DOI: 10.5517/ccdc.csd.cc285h43
title: CCDC 2090644: Experimental Crystal Structure Determination

description: Related Article: Narayan Ch. Jana, Pravat Ghorai, Paula Brandäo, Parbati Bandyopadhyay, Amrita Saha, Antonio Frontera, Anangamohan Panja|2022|Inorg.Chim.Acta|531|120702|doi:10.1016/j.ica.2021.120702
DOI: 10.5517/ccdc.csd.cc285h54
title: CCDC 2090645: Experimental Crystal Structure Determination

description: Related Article: Narayan Ch. Jana, Pravat Ghorai, Paula Brandäo, Parbati Bandyopadhyay, Amrita Saha, Antonio Frontera, Anangamohan Panja|2022|Inorg.Chim.Acta|531|120702|doi:10.1016/j.ica.2021.120702
DOI: 10.5517/ccdc.csd.cc28gbx0
title: CCDC 2099162: Experimental Crystal Structure Determination

description: Related Article: Obinna C. Okpareke, William Henderson, Senem Akkoç, Burak Coban|2022|Inorg.Chim.Acta|531|120707|doi:10.1016/j.ica.2021.120707
DOI: 10.5517/ccdc.csd.cc28gby1
title: CCDC 2099163: Experimental Crystal Structure Determination

description: Related Article: Obinna C. Okpareke, William Henderson, Senem Akkoç, Burak Coban|2022|Inorg.Chim.Acta|531|120707|doi:10.1016/j.ica.2021.120707
DOI: 10.7284/145288
title: Expendable Probe data collected during research cruise LMG0909 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145289
title: Expendable Probe data collected during research cruise LMG0909 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145277
title: Fluorometer data collected during research cruise LMG0909 using a WET Labs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145278
title: GNSS (Global Navigation Satellite System) data collected during research cruise LMG0909 using a Garmin 19x instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145280
title: Gyrocompass data collected during research cruise LMG0909 using a SGB Meridian instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.5727656
title: Data for: Speech naturalness detection and language representation in the dog brain

description: Abstract<br> Family dogs are exposed to a continuous flow of human speech throughout their lives. However, the extent of their abilities in speech perception is unknown. Here, we used functional magnetic resonance imaging (fMRI) to test speech detection and language representation in the dog brain. Dogs (n = 18) listened to natural speech and scrambled speech in a familiar and an unfamiliar language. Speech scrambling distorts auditory regularities specific to speech and to a given language, but keeps spectral voice cues intact. We hypothesized that if dogs can extract auditory regularities of speech, and of a familiar language, then there will be distinct patterns of brain activity for natural speech vs. scrambled speech, and also for familiar vs. unfamiliar language. Using multivoxel pattern analysis (MVPA) we found that bilateral auditory cortical regions represented natural speech and scrambled speech differently; with a better classifier performance in longer-headed dogs in a right auditory region. This neural capacity for speech detection was not based on preferential processing for speech but rather on sensitivity to sound naturalness.<br> Furthermore, in case of natural speech, distinct activity patterns were found for the two languages in the secondary auditory cortex and in the precruciate gyrus; with a greater difference in responses to the familiar and unfamiliar languages in older dogs, indicating a role for the amount of language exposure. No regions represented differently the scrambled versions of the two languages, suggesting that the activity difference between languages in natural speech reflected sensitivity to language-specific regularities rather than to spectral voice cues. These findings suggest that separate cortical regions support speech naturalness detection and language representation in the dog brain.<br> <br> This dataset contains Raw data (four functional runs and Matlab logs n = 18) Dog brain template Stimuli (natural and scrambled speech in Hungarian and Spanish) MVPA main results maps (Speech detection and Language discrimination, n = 18) GLM All sounds &gt; Silence contrast (n = 18)
DOI: 10.5281/zenodo.5727655
title: Data for: Speech naturalness detection and language representation in the dog brain

description: Abstract<br> Family dogs are exposed to a continuous flow of human speech throughout their lives. However, the extent of their abilities in speech perception is unknown. Here, we used functional magnetic resonance imaging (fMRI) to test speech detection and language representation in the dog brain. Dogs (n = 18) listened to natural speech and scrambled speech in a familiar and an unfamiliar language. Speech scrambling distorts auditory regularities specific to speech and to a given language, but keeps spectral voice cues intact. We hypothesized that if dogs can extract auditory regularities of speech, and of a familiar language, then there will be distinct patterns of brain activity for natural speech vs. scrambled speech, and also for familiar vs. unfamiliar language. Using multivoxel pattern analysis (MVPA) we found that bilateral auditory cortical regions represented natural speech and scrambled speech differently; with a better classifier performance in longer-headed dogs in a right auditory region. This neural capacity for speech detection was not based on preferential processing for speech but rather on sensitivity to sound naturalness.<br> Furthermore, in case of natural speech, distinct activity patterns were found for the two languages in the secondary auditory cortex and in the precruciate gyrus; with a greater difference in responses to the familiar and unfamiliar languages in older dogs, indicating a role for the amount of language exposure. No regions represented differently the scrambled versions of the two languages, suggesting that the activity difference between languages in natural speech reflected sensitivity to language-specific regularities rather than to spectral voice cues. These findings suggest that separate cortical regions support speech naturalness detection and language representation in the dog brain.<br> <br> This dataset contains Raw data (four functional runs and Matlab logs n = 18) Dog brain template Stimuli (natural and scrambled speech in Hungarian and Spanish) MVPA main results maps (Speech detection and Language discrimination, n = 18) GLM All sounds &gt; Silence contrast (n = 18)
DOI: 10.25810/fj1y-8c74.35
title: International Wire Services Coverage of Climate Change or Global Warming, 2004-2021 - November 2021 

description:         The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.7284/145478
title: Fluorometer data collected during research cruise LMG0907 using a WET Labs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145477
title: GNSS (Global Navigation Satellite System) data collected during research cruise LMG0907 using a Garmin 19x instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145479
title: Gyrocompass data collected during research cruise LMG0907 using a SGB Meridian instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.18430/m37syb
title: X-ray diffraction data for the crystal Structure of sulfurtransferase (DsrC family protein) from Acinetobacter baumannii (7SYB)
DOI: 10.15468/psej47
title: Late Miocene Conidae (Mollusca: Gastropoda) of Crete (Greece). Part 1: genera Conilithes Swainson, 1840 and Conus (Kalloconus) da Motta, 1991

description: This dataset contains the digitized treatments in Plazi based on the original journal article Psarras, Christos, Koskeridou, Efterpi, Merle, Didier (2021): Late Miocene Conidae (Mollusca: Gastropoda) of Crete (Greece). Part 1: genera Conilithes Swainson, 1840 and Conus (Kalloconus) da Motta, 1991. Geodiversitas 43 (24): 1309-1339, DOI: 10.5252/geodiversitas2021v43a24
DOI: 10.7284/145301
title: Expendable Probe data collected during research cruise LMG0906A using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145302
title: Expendable Probe data collected during research cruise LMG0906A using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145291
title: Fluorometer data collected during research cruise LMG0906A using a WET Labs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145292
title: GNSS (Global Navigation Satellite System) data collected during research cruise LMG0906A using a Garmin 19x instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/145293
title: Gyrocompass data collected during research cruise LMG0906A using a SGB Meridian instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.15139/s3/kxn8gn
title: Replication Data for: Party Competition and Policy Liberalism

description: Party competition is a foundational concept in the study of state politics, relating to outcomes as varied as policy choices, policy congruence, political participation, and the quality of representation. Scholars have long argued that increased levels of party competition are associated with more liberal policymaking. By this logic, parties in close competition with one another try to expand their bases of support by catering to the desires of those who tend to abstain from the political process -- the "have-nots." We extend this classic hypothesis by examining the relationship between competition and policy liberalism over several decades, articulating and testing a theory that suggests that party competition relates differently to social and economic policy liberalism. We find robust evidence that increased competition has a positive relationship with economic policy liberalism, weaker evidence for a negative relationship between competition and social policy liberalism, and suggestive evidence that the direction and magnitudes of these relationships have changed over time.
DOI: 10.25810/a0fk-ry55
title: North American Newspaper Coverage of Climate Change or Global Warming, 2000-2021 - November 2021
DOI: 10.15139/s3/ro9fzs
title: Replication Data for: The Politics of Wrongful Conviction Legislation

description: Wrongful convictions are an increasingly salient feature of criminal justice discourse in the United States. Many states have adopted reforms to mitigate the likelihood of wrongful convictions, discover errors, and provide redress in the wake of exonerations, yet we know little about why some are seemingly more committed to reducing such errors than others. We argue that public opinion is consequential for policy reform, but its effects are contingent on the electoral vulnerability of state lawmakers. We also suggest that advocacy organizations play a critical role in policy adoption. Incorporating data from all 50 states from 1989 through 2018, we investigate the adoption of five types of wrongful conviction reforms: (1) changes to eyewitness identification practices, (2) mandatory recording of interrogations, (3) the preservation of biological evidence, (4) access to post-conviction DNA testing, and (5) exoneree compensation. Our results highlight a more nuanced view of how public opinion shapes policy.