cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10116080.v2
title: Brassica_rapa (r-o-18) candidate napin sequences

description: Brassica rapa r-o-18 candidate napin genes.
DOI: 10.6084/m9.figshare.10116080.v4
title: Brassica_rapa (R-o-18 and Chiifu) candidate napin sequences

description: Brassica rapa r-o-18 candidate napin genes.
DOI: 10.6084/m9.figshare.10116017
title: tending data in 2018

description: thinning data in 2018
DOI: 10.6084/m9.figshare.10116080.v3
title: Brassica_rapa (r-o-18) candidate napin sequences

description: Brassica rapa r-o-18 candidate napin genes.
DOI: 10.6084/m9.figshare.10116017.v1
title: tending data in 2018

description: thinning data in 2018
DOI: 10.6084/m9.figshare.10115927
title: Dataset for: Ifu5, a WW domain-containing protein interacts with Efg1 to achieve coordination of normoxic and hypoxic functions to influence pathogenicity traits in <i>Candida albicans</i>

description: Hypoxic adaptation pathways, essential for <i>Candida albicans</i> pathogenesis, are tied to its transition from a commensal to a pathogen. Herein, we identify a WW domain-containing protein, Ifu5, as a determinant of hypoxic adaptation that also impacts normoxic responses in this fungus. Ifu5 activity supports glycosylation homeostasis via the Cek1 MAP kinase-dependent upregulation of <i>PMT1</i>, under normoxia. Transcriptome analysis of <i>ifu5</i>Δ/Δ under normoxia shows a significant upregulation of the hypoxic regulator <i>EFG1</i> and -dependent genes. We demonstrate physical interaction between Ifu5 by virtue of its WW domain and Efg1 that represses <i>EFG1</i> expression under normoxia. This interaction is lost under hypoxic growth conditions, relieving <i>EFG1</i> repression. Hypoxic adaptation processes such as filamentation and biofilm formation are affected in <i>ifu5</i>Δ/Δ cells revealing the role of Ifu5 in hypoxic signalling and modulating pathogenicity traits of <i>C. albicans</i> under varied oxygen conditions. Additionally, the WW domain of Ifu5 facilitates its role in hypoxic adaptation, revealing the importance of this domain in providing a platform to integrate various cellular processes. These data forge a relationship between Efg1 and Ifu5 that fosters the role of Ifu5 in hypoxic adaptation, thus illuminating novel strategies to undermine the growth of <i>C. albicans</i>.
DOI: 10.6084/m9.figshare.10115927.v1
title: Dataset for: Ifu5, a WW domain-containing protein interacts with Efg1 to achieve coordination of normoxic and hypoxic functions to influence pathogenicity traits in <i>Candida albicans</i>

description: Hypoxic adaptation pathways, essential for <i>Candida albicans</i> pathogenesis, are tied to its transition from a commensal to a pathogen. Herein, we identify a WW domain-containing protein, Ifu5, as a determinant of hypoxic adaptation that also impacts normoxic responses in this fungus. Ifu5 activity supports glycosylation homeostasis via the Cek1 MAP kinase-dependent upregulation of <i>PMT1</i>, under normoxia. Transcriptome analysis of <i>ifu5</i>Δ/Δ under normoxia shows a significant upregulation of the hypoxic regulator <i>EFG1</i> and -dependent genes. We demonstrate physical interaction between Ifu5 by virtue of its WW domain and Efg1 that represses <i>EFG1</i> expression under normoxia. This interaction is lost under hypoxic growth conditions, relieving <i>EFG1</i> repression. Hypoxic adaptation processes such as filamentation and biofilm formation are affected in <i>ifu5</i>Δ/Δ cells revealing the role of Ifu5 in hypoxic signalling and modulating pathogenicity traits of <i>C. albicans</i> under varied oxygen conditions. Additionally, the WW domain of Ifu5 facilitates its role in hypoxic adaptation, revealing the importance of this domain in providing a platform to integrate various cellular processes. These data forge a relationship between Efg1 and Ifu5 that fosters the role of Ifu5 in hypoxic adaptation, thus illuminating novel strategies to undermine the growth of <i>C. albicans</i>.
DOI: 10.6084/m9.figshare.10115900
title: INSTANCES

description: Each family of instances is contained in a .zip/tar.xz file reporting the family name. Each folder contains the test problems along with the corresponding initial solution file (.txt) obtained with Dijkstra's algorithm and needed to compute the reduced cost before the perturbation.<br>Furthermore, the instances are .txt files named as "<i>TypologyDimension_Maxcost</i>".
DOI: 10.6084/m9.figshare.10115900.v2
title: INSTANCES

description: Each family of instances is contained in a .zip/tar.xz file reporting the family name. Each folder contains the test problems along with the corresponding initial solution file (.txt) obtained with Dijkstra's algorithm and needed to compute the reduced cost before the perturbation.<br>Furthermore, the instances are .txt files named as "<i>TypologyDimension_Maxcost</i>".
DOI: 10.6084/m9.figshare.10115900.v1
title: INSTANCES

description: Each family of instances is contained in a .zip/tar.xz file reporting the family name. Each folder contains the test problems along with the corresponding initial solution file (.txt) obtained with Dijkstra's algorithm and needed to compute the reduced cost before the perturbation.<br>Furthermore, the instances are .txt files named as "<i>TypologyDimension_Maxcost</i>".
DOI: 10.6084/m9.figshare.10115861
title: AppendixS2

description: AppendixS2<br>
DOI: 10.6084/m9.figshare.10115864
title: Supplemental Table S7

description: RNA sequencing dataset
DOI: 10.6084/m9.figshare.10115861.v1
title: AppendixS2

description: AppendixS2<br>
DOI: 10.6084/m9.figshare.10115864.v2
title: Supplemental Table S7

description: RNA sequencing dataset
DOI: 10.6084/m9.figshare.10115864.v1
title: Supplemental Table 7

description: RNA sequencing dataset
DOI: 10.6084/m9.figshare.10115198
title: scripts used to analyse, tools

description: tools used by specific script
DOI: 10.6084/m9.figshare.10115195
title: supplementary figure (annotation)

description: supplemenatry figure, annotation of H. Diminuta.
DOI: 10.6084/m9.figshare.10115192
title: gene annotation

description: Hymenolepsis diminuta gene annotation deposited in the ENA database and processed by the EMBL-EBI system.
DOI: 10.6084/m9.figshare.10115198.v1
title: scripts used to analyse, tools

description: tools used by specific script
DOI: 10.6084/m9.figshare.10115192.v1
title: gene annotation

description: Hymenolepsis diminuta gene annotation deposited in the ENA database and processed by the EMBL-EBI system.
DOI: 10.6084/m9.figshare.10115195.v1
title: supplementary figure (annotation)

description: supplemenatry figure, annotation of H. Diminuta.
DOI: 10.6084/m9.figshare.10115099
title: DATAS1

description: This folder contains the data in the article.
DOI: 10.6084/m9.figshare.10115099.v1
title: DATAS1

description: This folder contains the data in the article.
DOI: 10.6084/m9.figshare.10113509
title: Inventory of child bicycle education programs reveals need for age, development, and skill-level considerations

description: <b>Objective:</b> There are a plethora of child bicycle safety education programs worldwide. However, the content and durations vary widely from program to program and no gold standard has been established. The main objective of this project was to create an inventory of youth bicycle safety education programs and their content, approaches, and age and developmental considerations. <b>Methods:</b> Methods used to gather program information included web and online database searches, extraction from personal lists, and a widely distributed online survey. A total of 89 programs met inclusion criteria and were reviewed (78 from the United States and 11 from other countries). <b>Results:</b> Over half (56.2%) of the included programs were not explicitly age specific, meaning that the content was not appropriately designated by age and developmental cut points. Many programs had target age groups, but these were often very wide age ranges (e.g., all elementary school–age children) resulting in content too advanced for the youngest children. Only 12.4% of included programs had published program evaluations and their scientific rigor varied widely. Main results from this inventory revealed a weak evidence base for program effectiveness due to lack of program evaluations. Results also highlighted a need for age, development, and skill-level considerations in youth bicycle education programs. <b>Conclusions:</b> This study provides a comprehensive list of program components and approaches that can be used as a foundation upon which child bicycle education standards can be evaluated and built, with the long-term goal of increased childhood safety.
DOI: 10.6084/m9.figshare.10113356
title: Effects of child restraint misuse on dynamic performance

description: <b>Objective:</b> Estimates of child restraint misuse rates in the United States range from 49% to 95%, but not all misuse modes have similar consequences in terms of restraint effectiveness. A series of laboratory sled tests was conducted to determine the effects of common misuses and combinations of misuses, including loose harness, loose installation, incorrect installation angle, incorrect belt path, loose/no tether, and incorrect harness clip usage. <b>Methods:</b> Three commercial convertible child restraint models were loaded with the Hybrid III 3-year-old anthropomorphic test device (ATD) and secured by either LATCH or seat belt on a modified FMVSS No. 213 bench. Tests were conducted in forward-facing (FF) and rear-facing (RF) modes. The response variables included ATD accelerations, excursions, and restraint kinematics. Belt/LATCH loads, tether loads, ATD kinematics, and restraint structural response data were also documented. A fractional factorial test design on 8 factors was used to define an initial series of 32 tests. The first series also included 4 tests of correct CRS, 2 forward facing and 2 rearward facing. The analysis of those data determined the selection of conditions for the remaining 20 tests to focus on factors and interactions of high interest and significance. <b>Results:</b> In the RF condition, misrouting the LATCH belt or seat belt through the incorrect belt path was the only misuse that significantly affected outcomes of interest and was associated with high levels of undesirable CRS rotation. In FF tests, loose installation and tether misuse had large adverse effects on 3 of 4 key response variables. <b>Conclusion:</b> The study provides strong evidence for prioritizing tight restraint installation and proper tether use for FF restraints. In particular, use of the tether helped offset the adverse effects of loose installation or loose harness. Because the results show that performance of a RF child restraint system (CRS) installation is less affected by user error, they also provide support for extended RF restraint use. In addition, packaging convertible child restraints with the LATCH belt routed through the RF belt path could help prevent the most consequential RF CRS misuse.
DOI: 10.6084/m9.figshare.10113509.v1
title: Inventory of child bicycle education programs reveals need for age, development, and skill-level considerations

description: <b>Objective:</b> There are a plethora of child bicycle safety education programs worldwide. However, the content and durations vary widely from program to program and no gold standard has been established. The main objective of this project was to create an inventory of youth bicycle safety education programs and their content, approaches, and age and developmental considerations. <b>Methods:</b> Methods used to gather program information included web and online database searches, extraction from personal lists, and a widely distributed online survey. A total of 89 programs met inclusion criteria and were reviewed (78 from the United States and 11 from other countries). <b>Results:</b> Over half (56.2%) of the included programs were not explicitly age specific, meaning that the content was not appropriately designated by age and developmental cut points. Many programs had target age groups, but these were often very wide age ranges (e.g., all elementary school–age children) resulting in content too advanced for the youngest children. Only 12.4% of included programs had published program evaluations and their scientific rigor varied widely. Main results from this inventory revealed a weak evidence base for program effectiveness due to lack of program evaluations. Results also highlighted a need for age, development, and skill-level considerations in youth bicycle education programs. <b>Conclusions:</b> This study provides a comprehensive list of program components and approaches that can be used as a foundation upon which child bicycle education standards can be evaluated and built, with the long-term goal of increased childhood safety.
DOI: 10.6084/m9.figshare.10113356.v1
title: Effects of child restraint misuse on dynamic performance

description: <b>Objective:</b> Estimates of child restraint misuse rates in the United States range from 49% to 95%, but not all misuse modes have similar consequences in terms of restraint effectiveness. A series of laboratory sled tests was conducted to determine the effects of common misuses and combinations of misuses, including loose harness, loose installation, incorrect installation angle, incorrect belt path, loose/no tether, and incorrect harness clip usage. <b>Methods:</b> Three commercial convertible child restraint models were loaded with the Hybrid III 3-year-old anthropomorphic test device (ATD) and secured by either LATCH or seat belt on a modified FMVSS No. 213 bench. Tests were conducted in forward-facing (FF) and rear-facing (RF) modes. The response variables included ATD accelerations, excursions, and restraint kinematics. Belt/LATCH loads, tether loads, ATD kinematics, and restraint structural response data were also documented. A fractional factorial test design on 8 factors was used to define an initial series of 32 tests. The first series also included 4 tests of correct CRS, 2 forward facing and 2 rearward facing. The analysis of those data determined the selection of conditions for the remaining 20 tests to focus on factors and interactions of high interest and significance. <b>Results:</b> In the RF condition, misrouting the LATCH belt or seat belt through the incorrect belt path was the only misuse that significantly affected outcomes of interest and was associated with high levels of undesirable CRS rotation. In FF tests, loose installation and tether misuse had large adverse effects on 3 of 4 key response variables. <b>Conclusion:</b> The study provides strong evidence for prioritizing tight restraint installation and proper tether use for FF restraints. In particular, use of the tether helped offset the adverse effects of loose installation or loose harness. Because the results show that performance of a RF child restraint system (CRS) installation is less affected by user error, they also provide support for extended RF restraint use. In addition, packaging convertible child restraints with the LATCH belt routed through the RF belt path could help prevent the most consequential RF CRS misuse.
DOI: 10.6084/m9.figshare.10113110
title: normalized RNA reads

description: normalized RNA reads<br>
DOI: 10.6084/m9.figshare.10113125
title: Nematode Covariate Metadata

description: <br>
DOI: 10.6084/m9.figshare.10113239.v1
title: Fine-Scale Spatiotemporal Air Pollution Analysis Using Mobile Monitors on Google Street View Vehicles

description: People are increasingly concerned with understanding their personal environment, including possible exposure to harmful air pollutants. To make informed decisions on their day-to-day activities, they are interested in real-time information on a localized scale. Publicly available, fine-scale, high-quality air pollution measurements acquired using mobile monitors represent a paradigm shift in measurement technologies. A methodological framework utilizing these increasingly fine-scale measurements to provide real-time air pollution maps and short-term air quality forecasts on a fine-resolution spatial scale could prove to be instrumental in increasing public awareness and understanding. The Google Street View study provides a unique source of data with spatial and temporal complexities, with the potential to provide information about commuter exposure and hot spots within city streets with high traffic. We develop a computationally efficient spatiotemporal model for these data and use the model to make short-term forecasts and high-resolution maps of current air pollution levels. We also show via an experiment that mobile networks can provide more nuanced information than an equally sized fixed-location network. This modeling framework has important real-world implications in understanding citizens’ personal environments, as data production and real-time availability continue to be driven by the ongoing development and improvement of mobile measurement technologies. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
DOI: 10.6084/m9.figshare.10113032
title: Global Nematode Abundance Dataset

description: <b>A comprehensive global dataset of soil nematode abundance and functional group composition. This dataset includes 6,825 georeferenced soil samples from all continents and biomes. </b><br>
DOI: 10.6084/m9.figshare.10113092
title: Aggregated Nematode Abundance withPixelValues

description: Global nematode abundance dataset (10.6084/m9.figshare.10113032) aggregated into 1,933 unique 1-km pixels, each of which is linked to 73 global environmental covariate data layers. The covariate data includes information on soil physiochemical properties, and vegetation, climate, and topographic, anthropogenic, and spectral reflectance information.
DOI: 10.6084/m9.figshare.10113092.v2
title: Aggregated Nematode Abundance withPixelValues

description: Global nematode abundance dataset (10.6084/m9.figshare.10113032) aggregated into 1,933 unique 1-km pixels, each of which is linked to 73 global environmental covariate data layers. The covariate data includes information on soil physiochemical properties, and vegetation, climate, and topographic, anthropogenic, and spectral reflectance information.
DOI: 10.6084/m9.figshare.10113092.v1
title: Aggregated Nematode Abundance withPixelValues

description: Global nematode abundance dataset (10.6084/m9.figshare.10113032) aggregated into 1,933 unique 1-km pixels, each of which is linked to 73 global environmental covariate data layers. The covariate data includes information on soil physiochemical properties, and vegetation, climate, and topographic, anthropogenic, and spectral reflectance information.
DOI: 10.6084/m9.figshare.10113125.v2
title: Nematode Covariate Metadata

description: Covariate metadata, including descriptions, units, and source information, of all global covariate layers included in 10.6084/m9.figshare.10113092<br>
DOI: 10.6084/m9.figshare.10110992
title: A broadly applicable cross-linker for aliphatic polymers containing C–H bonds: Raw NMR Data

description: Complete NMR data sets for compounds reported in 'A broadly applicable cross-linker for aliphatic polymers containing C–H bonds', Science 2019. Acquired on a Bruker AVANCE 300 spectrometer or a Bruker AVANCE Neo 500 spectrometer.
DOI: 10.6084/m9.figshare.10111001
title: Navon Visual Field Raw Data.xlsx

description: This dataset comprises all the raw data used in the paper by Christian Gerlach and Nicolas Poirel entitled: "Who's got the global advantage? Visuel field differences in processing of global and local shape".
DOI: 10.6084/m9.figshare.10113125.v1
title: Nematode Covariate Metadata

description: Covariate metadata, including descriptions, units, and source information, of all global covariate layers included in 10.6084/m9.figshare.10113092<br>
DOI: 10.6084/m9.figshare.10110980
title: Simple-Categorization and Crossed-Categorization

description: Simple-Categorization and Crossed-Categorization
DOI: 10.6084/m9.figshare.10111001.v1
title: Navon Visual Field Raw Data.xlsx

description: This dataset comprises all the raw data used in the paper by Christian Gerlach and Nicolas Poirel entitled: "Who's got the global advantage? Visuel field differences in processing of global and local shape".
DOI: 10.6084/m9.figshare.10110980.v1
title: Simple-Categorization and Crossed-Categorization

description: Simple-Categorization and Crossed-Categorization
DOI: 10.6084/m9.figshare.10110992.v1
title: A broadly applicable cross-linker for aliphatic polymers containing C–H bonds: Raw NMR Data

description: Complete NMR data sets for compounds reported in 'A broadly applicable cross-linker for aliphatic polymers containing C–H bonds', Science 2019. Acquired on a Bruker AVANCE 300 spectrometer or a Bruker AVANCE Neo 500 spectrometer.
DOI: 10.6084/m9.figshare.10110953
title: DFT output files for "Tolerance Factor Control of Uniaxial Negative Thermal Expansion in a Layered Perovskite"

description: Output files for density functional theory (DFT) calculations performed using CASTEP v.7.0.1 on Ca2-xSrxMnO4, Ca2-xSrxGeO4, Ca2Mn1-y'Tcy'O4, Ca2Ge1-y''Sny''O4 and Ca2TiO4 Ruddlesden-Popper oxides. When stable, the I4/mmm, I41acd and Pbca phases of each compound are simulated. Solid solutions are modelled using the virtual crystal approximation (VCA). Structural relaxation was performed on all compounds with deformations required to compute phonons and elastic compliances performed on selected compounds.
DOI: 10.5522/04/10110860
title: Writings on Political Economy Volume V, Preliminaries and preliminary text files 1-2, 5-15.

description: These files are first, Preliminaries and a very brief Editorial Introduction, and second, thirteen of fifteen text files for the preliminary text of the volume. N.B. Text files 3 and 4, 'Sur les prix' and 'Balance de commerce' will not be uploaded at this time, since further editorial work on them is required. NB.2. At this stage, the text remains provisional, and subject to modification before publication.
DOI: 10.6084/m9.figshare.10110953.v1
title: DFT output files for "Tolerance Factor Control of Uniaxial Negative Thermal Expansion in a Layered Perovskite"

description: Output files for density functional theory (DFT) calculations performed using CASTEP v.7.0.1 on Ca2-xSrxMnO4, Ca2-xSrxGeO4, Ca2Mn1-y'Tcy'O4, Ca2Ge1-y''Sny''O4 and Ca2TiO4 Ruddlesden-Popper oxides. When stable, the I4/mmm, I41acd and Pbca phases of each compound are simulated. Solid solutions are modelled using the virtual crystal approximation (VCA). Structural relaxation was performed on all compounds with deformations required to compute phonons and elastic compliances performed on selected compounds.
DOI: 10.6084/m9.figshare.10110953.v2
title: DFT output files for "Tolerance Factor Control of Uniaxial Negative Thermal Expansion in a Layered Perovskite"

description: Output files for density functional theory (DFT) calculations performed using CASTEP v.7.0.1 on Ca2-xSrxMnO4, Ca2-xSrxGeO4, Ca2Mn1-y'Tcy'O4, Ca2Ge1-y''Sny''O4 and Ca2TiO4 Ruddlesden-Popper oxides. When stable, the I4/mmm, I41acd and Pbca phases of each compound are simulated. Solid solutions are modelled using the virtual crystal approximation (VCA). Structural relaxation was performed on all compounds with deformations required to compute phonons and elastic compliances performed on selected compounds.
DOI: 10.6084/m9.figshare.10110755
title: Metadata record for: SeaFlow data v1, high-resolution abundance, size and biomass of small phytoplankton in the North Pacific

description: This dataset contains key characteristics about the data described in the Data Descriptor SeaFlow data v1, high-resolution abundance, size and biomass of small phytoplankton in the North Pacific. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>