DOI: 10.6084/m9.figshare.12453602
title: The drivers of vine-plant root microbiota endosphere composition include both abiotic and plant-specific factors

description: @page { margin: 2cm } p { margin-bottom: 0.25cm; line-height: 115% } Script_CCA_linearmodels.RScript to perform multivariate analysis (Canonical correspondance analysis CCA) and univariate models (Linear Models and linear Mixed Models using model averaging methodology) to test the effect(s) of the environmental factors (abiotic and plant-specific factors) on the microbial composition, richness and evenness at both alpha- & gamma-scale<br> Matrix_fungi_CCA.ods Data to perform CCA analysis on fungal communities at both the alpha- & gamma-scale<br> -&gt; This spreadsheet file has 7 sheets : (1) summary of the spreadsheet content; (2) fungal composition at the gamma-scale with details of the taxonomy; (3) fungal composition at the alpha-scale with details of the taxonomy; (4) contingence matrix used for the CCA function at the gamma-scale; (5) contingence matrix used for the CCA function at the alpha-scale; (6) matrix containing environmental variables used for the CCA function at the gamma-scale; (7) matrix containing environmental variables used for the CCA function at the alpha-scale <br> Matrix_bacteria_CCA.ods Data to perform CCA analysis on bacterial communities at both the alpha- & gamma-scale<br> -&gt; This spreadsheet file has 7 sheets : (1) summary of the spreadsheet content; (2) bacterial composition at the gamma-scale with details of the taxonomy; (3) bacterial composition at the alpha-scale with details of the taxonomy; (4) contingence matrix used for the CCA function at the gamma-scale; (5) contingence matrix used for the CCA function at the alpha-scale; (6) matrix containing environmental variables used for the CCA function at the gamma-scale; (7) matrix containing environmental variables used for the CCA function at the alpha-scale <br> Matrix_fungi_linearmodel.ods Data to perform linear and linear mixed model analysis on fungal communities at both the alpha- & gamma-scale<br> -&gt; This spreadsheet file has 5 sheets : (1) summary of the spreadsheet content; (2) fungal composition at the gamma-scale with details of the taxonomy; (3) fungal composition at the alpha-scale with details of the taxonomy; (4) environmental variables, richness & evenness (simpson indexes) values for the entire pool of fungi and the different phyla used for the linear model analysis at the gamma-scale; (5) environmental variables, richness & evenness (simpson indexes) values for the entire pool of fungi and the different phyla used for the linear mixed model analysis at the gamma-scale <br> Matrix_bacteria_linearmodel.ods Data to perform linear and linear mixed model analysis on bacterial communities at both the alpha- & gamma-scale<br> -&gt; This spreadsheet file has 5 sheets : (1) summary of the spreadsheet content; (2) bacterial composition at the gamma-scale with details of the taxonomy; (3) bacterial composition at the alpha-scale with details of the taxonomy; (4) environmental variables, richness & evenness (simpson indexes) values for the entire pool of bacteria and the different phyla used for the linear model analysis at the gamma-scale; (5) environmental variables, richness & evenness (simpson indexes) values for the entire pool of bacteria and the different phyla used for the linear mixed model analysis at the gamma-scale <br> <br>