cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1375136.10fu
title: SH1375136.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1375138.10fu
title: SH1375138.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1375142.10fu
title: SH1375142.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.11549189
title: Raw Data of Diurnal Emissions for Three Species of Narcissus

description: This dataset contains raw emission data fro three species of Narcissus, recorded using gas chromatography coupled ion mobility spectrometry (Fur further Information of the used technique see: 

Losch F, Liedtke S, Vautz W, Weigend M (2023) Evaluation of floral volatile patterns in the genus Narcissus using gas chromatography-coupled ion mobility spectrometry. Applications in plant sciences, doi: 10.1002/aps3.11506. 

The data is stored in excel-worksheets with up to three different tables. For each Sample (2 Individuals of N. viridiflorus, 3 Individuals of N. papyraceus and 3 individuals of N. cantabricus), ~ 150 measurements were conducted over a time period of 72 hours. 

Table1 consists of an sample identification number, which is composed of the corresponding date-time information. The format of the ID is YY-MM-DD hh:mm. The other columns (P0, P1,P2...) containing the signal intensities (semi-quantitative) of detected compounds for each time stamp. 

Table2 contains information of the signals, such as the compound name (If signal could be identified), retention time (tR(s)), relative and ion mobility (1/K0).
DOI: 10.5281/zenodo.11549190
title: Raw Data of Diurnal Emissions for Three Species of Narcissus

description: This dataset contains raw emission data fro three species of Narcissus, recorded using gas chromatography coupled ion mobility spectrometry (Fur further Information of the used technique see: 

Losch F, Liedtke S, Vautz W, Weigend M (2023) Evaluation of floral volatile patterns in the genus Narcissus using gas chromatography-coupled ion mobility spectrometry. Applications in plant sciences, doi: 10.1002/aps3.11506. 

The data is stored in excel-worksheets with up to three different tables. For each Sample (2 Individuals of N. viridiflorus, 3 Individuals of N. papyraceus and 3 individuals of N. cantabricus), ~ 150 measurements were conducted over a time period of 72 hours. 

Table1 consists of an sample identification number, which is composed of the corresponding date-time information. The format of the ID is YY-MM-DD hh:mm. The other columns (P0, P1,P2...) containing the signal intensities (semi-quantitative) of detected compounds for each time stamp. 

Table2 contains information of the signals, such as the compound name (If signal could be identified), retention time (tR(s)), relative and ion mobility (1/K0).
DOI: 10.6084/m9.figshare.25607139
title: Genomic Variants, Transcriptome and Genome Annotation of I. puberulus

description: Transcriptome annotationThe transcriptome was annotated using OmicsBox v3.0.30 (BioBam, Valencia, Spain). Initially, we filtered contigs to include only those longer than 300 bp. These were then aligned against the NCBI non-redundant NR protein database for Viridiplantae using a stringent e-value cutoff of 10e−5. Further annotations were performed using InterProScan to identify protein domains, and the Kyoto Encyclopedia of Genes and Genomes (KEGG) database to map Enzyme Commission (EC) terms and associated metabolic pathways. This is a tab-delimited text file.Genome Annotation (Gene Prediction) of I. puberulus Using Haplophase 1Repetitive regions in the genome were identified and soft-masked using RepeatModeler and RepeatMasker. RNA-seq data from two individuals per sampled population of I. puberulus were aligned to the genome using BBMap to aid in genome annotation. The structural annotation was conducted using the BRAKER2 pipeline, utilizing RNA-seq data as extrinsic evidence. The process focused on the 13 largest scaffolds of the I. puberulus genome. Two files are provided here one with the annotation of all the assembled scaffolds, and a second one with only the annotation of the 13 largest, chromossome-scale scaffolds, both in GTF format.Genomic Variants of I. puberulus from RNA-Seq AnalysisThe data was generated using the STAR aligner for read mapping and the Genome Analysis Toolkit (GATK) for SNP calling and filtering. The dataset aims to provide comprehensive insights into the genetic diversity and structure of I. puberulus populations. Filtered RNA-Seq reads were aligned to the haplophase 1 (BioProject PRJNA1095439) reference genome of I. puberulus using the STAR v2.7.9 software, following a two-pass mapping strategy to enhance the accuracy of splice junction recovery and mapping. Variant calling was performed using GATK’s HaplotypeCaller, followed by variant filtration to ensure high-quality SNP discovery. Subsequent analyses for population genetic assessments were conducted using VCFtools. Quality control measures included duplicate marking, read group addition, and stringent filtering criteria for SNPs to exclude clusters and low-confidence variants. Only high-confidence, biallelic SNPs with sufficient read depth and allele frequency were retained. This dataset is in VCf format.
DOI: 10.15468/dl.b3k3gv
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Flora of the Dutch Caribbean Islands, Naturalis Biodiversity Center (NL) - Botany, The New York Botanical Garden Herbarium (NY))",
 "Geometry POLYGON((-86.68112 5.43066,-51.31888 5.43066,-51.31888 19.56934,-86.68112 19.56934,-86.68112 5.43066))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sabal antillensis M.P.Griff."
 ]
}

 The dataset includes 46 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273647-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25607139.v1
title: Genomic Variants, Transcriptome and Genome Annotation of I. puberulus

description: Transcriptome annotationThe transcriptome was annotated using OmicsBox v3.0.30 (BioBam, Valencia, Spain). Initially, we filtered contigs to include only those longer than 300 bp. These were then aligned against the NCBI non-redundant NR protein database for Viridiplantae using a stringent e-value cutoff of 10e−5. Further annotations were performed using InterProScan to identify protein domains, and the Kyoto Encyclopedia of Genes and Genomes (KEGG) database to map Enzyme Commission (EC) terms and associated metabolic pathways. This is a tab-delimited text file.Genome Annotation (Gene Prediction) of I. puberulus Using Haplophase 1Repetitive regions in the genome were identified and soft-masked using RepeatModeler and RepeatMasker. RNA-seq data from two individuals per sampled population of I. puberulus were aligned to the genome using BBMap to aid in genome annotation. The structural annotation was conducted using the BRAKER2 pipeline, utilizing RNA-seq data as extrinsic evidence. The process focused on the 13 largest scaffolds of the I. puberulus genome. Two files are provided here one with the annotation of all the assembled scaffolds, and a second one with only the annotation of the 13 largest, chromossome-scale scaffolds, both in GTF format.Genomic Variants of I. puberulus from RNA-Seq AnalysisThe data was generated using the STAR aligner for read mapping and the Genome Analysis Toolkit (GATK) for SNP calling and filtering. The dataset aims to provide comprehensive insights into the genetic diversity and structure of I. puberulus populations. Filtered RNA-Seq reads were aligned to the haplophase 1 (BioProject PRJNA1095439) reference genome of I. puberulus using the STAR v2.7.9 software, following a two-pass mapping strategy to enhance the accuracy of splice junction recovery and mapping. Variant calling was performed using GATK’s HaplotypeCaller, followed by variant filtration to ensure high-quality SNP discovery. Subsequent analyses for population genetic assessments were conducted using VCFtools. Quality control measures included duplicate marking, read group addition, and stringent filtering criteria for SNPs to exclude clusters and low-confidence variants. Only high-confidence, biallelic SNPs with sufficient read depth and allele frequency were retained. This dataset is in VCf format.
DOI: 10.15468/dl.kr6uam
title: Occurrence Download

description: A dataset containing 1314 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachythecium buchananii (Hook.) A.Jaeger"
 ]
}

 The dataset includes 1314 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277149-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfcmaw
title: Occurrence Download

description: A dataset containing 1135 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Acer rubrum L."
 ]
 },
 "HasCoordinate is true",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2020",
 "DecimalLatitude is greater than or equal to 45.2",
 "DecimalLatitude is less than or equal to 62.3",
 "DecimalLongitude is greater than or equal to -77",
 "DecimalLongitude is less than or equal to -60.3"
 ]
}

 The dataset includes 1135 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0270643-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2e6exc
title: Occurrence Download

description: A dataset containing 1591 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bahamas",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 1c0babcc-cbdd-4dc7-8605-d7788db1a1b6",
 "TaxonKey is Charadrius melodus Ord, 1824"
 ]
}

 The dataset includes 1591 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277150-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3azypu
title: Occurrence Download

description: A dataset containing 27417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gonepteryx rhamni (Linnaeus, 1758)",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((19.51 47.46,19.51 36.21,6.41 36.21,6.41 47.46,19.51 47.46)))"
 ]
}

 The dataset includes 27417 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036498-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rm4yeu
title: Occurrence Download

description: A dataset containing 260 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Caracterización de Aves en el área de Farallones en la jurisdicción de CORPOGUAVIO"
 ]
}

 The dataset includes 260 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002255-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqfwng
title: Occurrence Download

description: A dataset listing the 153 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-70.40021 45.79626,-70.26461 45.87583,-70.23591 45.94129,-70.28561 45.99157,-70.31701 46.02012,-70.49383 46.01714,-70.40021 45.79626))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 153 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273610-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84jnj4
title: Occurrence Download

description: A dataset containing 6991 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, Canada, Mexico, United States Minor Outlying Islands, Puerto Rico, Virgin Islands (U.S.), American Samoa, Guam, Northern Mariana Islands)",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 {
 "and" : [
 "Country is one of (Canada)",
 "StateProvince is one of (british columbia, british columbia (prov.), british columbia / colombie britanique, british columbia prov, british columbia prv, british columbia canada, british columbia province, british columbia, vancouver island, british columbia., british columbia prov., british columbia ?, british columbia (英屬哥倫比亞), british columbia; vancouver island, british columbia?, british columbia v, british columbia, liard river hot springs, alaska highway mile 496.5, by the easternmost swimming pool (spring), british columbia, mcleod lake district, british columbia; frank island, british columbia; queen charlotte archipel; graham island, british columbia (uapc-alta), british columbia (英屬哥倫比亞省))",
 "TaxonKey is one of (Ephemeroptera, Plecoptera, Trichoptera)"
 ]
 }
 ]
}

 The dataset includes 6991 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277168-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvk96a
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stachyurus obovatus (Rehder) Hand.-Mazz.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 124 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0270645-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9dazc
title: Occurrence Download

description: A dataset containing 5665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Podiceps nigricollis C.L.Brehm, 1831",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((19.51 47.46,19.51 36.21,6.41 36.21,6.41 47.46,19.51 47.46)))"
 ]
}

 The dataset includes 5665 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036489-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5muwf
title: Occurrence Download

description: A dataset containing 326194 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is one of (Fiji)"
 ]
}

 The dataset includes 326194 records from 698 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288958-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9pe74
title: Occurrence Download

description: A dataset containing 198410 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Setophaga pitiayumi (Vieillot, 1817)"
 ]
}

 The dataset includes 198410 records from 231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277127-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4a689d
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lachenalia longibracteata E.Phillips"
 ]
}

 The dataset includes 138 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002463-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqzmdt
title: Occurrence Download

description: A dataset containing 803128 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thalasseus sandvicensis (Latham, 1787)"
 ]
}

 The dataset includes 803128 records from 568 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277162-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/e95-7sk-y76
title: Melochia simplex A. St.-Hil.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/fne-k1e-jfa
title: Mirabilis jalapa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rph-49t-xyg
title: Crataegus dahurica (Dieck) Koehne

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/yt8-32d-xcw
title: Melochia spicata (L.) Fryxell

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.t59kew
title: Occurrence Download

description: A dataset containing 8116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene vulgaris",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8116 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063404-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/j0c-eey-4j6
title: Sorbus cashmiriana Hedl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/axm-z06-qfy
title: Melicytus latifolius (Lindl.) P. S. Green

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/m6v-hze-r5s
title: Melochia tomentosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/f8g-tzm-q8q
title: Prunus griffithii (Boiss.) C. K. Schneid.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hbz-lxp-40q
title: Guapira Aubl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.uebnge
title: Occurrence Download

description: A dataset containing 257586 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is WELT Herbarium at Museum of New Zealand Te Papa Tongarewa"
 ]
}

 The dataset includes 257586 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063392-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/79b-gr5-4kt
title: Guapira Aubl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pbc-e2q-xwb
title: Melicytus latifolius (Lindl.) P. S. Green

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jte-zql-snt
title: Melochia simplex A. St.-Hil.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jv8-tqc-0bt
title: Guapira Aubl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9b8-3ft-8md
title: Mirabilis jalapa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/k3f-7p1-pty
title: Diosma hirsuta L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ydr-rvs-gfn
title: Mirabilis jalapa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/gd9-mzk-60j
title: Melicytus latifolius (Lindl.) P. S. Green

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/s9e-w7h-3ct
title: Melochia simplex A. St.-Hil.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wfk-x2m-j2j
title: Melochia simplex A. St.-Hil.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bhy-6g3-jq4
title: Palicourea tenerior (Cham.) Delprete & J.H.Kirkbr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/cyn-svz-hg1
title: Piper arboreum Aubl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/077-3fw-q1f
title: Piper aduncum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.