cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.935514
title: Advection code for calculating fraction of dendrite-bearing region of chemosensory hair array during flicking

description: Code to accompany an upcoming publication: "Ontogenetic changes in the olfactory antennules of the shore crab, Hemigrapsus oregonensis, maintain sniffing function during growth" by Lindsay D. Waldrop, Miranda Hann, Amy Henry, Agnes Kim, Ayesha Punjabi, and M. A. R. Koehl. This code models fluid movement via a forward-Euler method with lagragian fluid parcel-tracking. All files (including the associate data files, found at <br>http://dx.doi.org/10.6084/m9.figshare.928567 ) should be in the same directory. The file makenewdataCh3.m transforms data files Event###_flickdata.mat into the code-useable form Event###_newdata.mat by reinterpolating velocities onto a 1000 by 1000 grid and streamlining the information in flickdata structured to only what is needed to run the advection code. The file ch3sniff.m starts the simulation and calls in_ch3sniff.m to initialize parameters, creates the lagrangian array, and loads required data. It calls the file sniffadonly.m to advance the forward-Euler by one time step. It tests the final array of fluid parcels for inclusion within the array and returns a total fraction that represents the fluid parcels remaining in the array after a full stroke.
DOI: 10.6084/m9.figshare.936560.v3
title: draft

description: Chem
DOI: 10.6084/m9.figshare.935573
title: Pine and Serotiny

description: Analysis of simulation data for the ms "Evolution of serotiny in maritime pine Pinus pinaster in the light of increasing frequency of fires", currently submitted to Plant Ecology. Please read the file Vincenzi and Piotti pine sim analysis.r
DOI: 10.6084/m9.figshare.935501
title: Gaussian Job Archive for C65H98ClGeN3Si2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.935502
title: DMTCP: Bringing Checkpoint-Restart to Python

description: DMTCP (Distributed MultiThreaded CheckPointing) is a mature checkpoint-restart package. It operates in user-space without kernel privilege, and adapts to application-specific requirements through plugins. While DMTCP has been able to checkpoint Python and IPython "from the outside" for many years, a Python module has recently been created to support DMTCP. IPython support is included through a new DMTCP plugin. A checkpoint can be requested interactively within a Python session, or under the control of a specific Python program. Further, the Python program can execute specific Python code prior to checkpoint, upon resuming (within the original process), and upon restarting (from a checkpoint image). Applications of DMTCP are demonstrated for: (i) Python-based graphics using VNC; (ii) a Fast/Slow technique to use multiple hosts or cores to check one Cython computation in parallel; and (iii) a reversible debugger, FReD, with a novel reverse-expression watchpoint feature for locating the cause of a bug.
DOI: 10.6084/m9.figshare.935501.v1
title: Gaussian Job Archive for C65H98ClGeN3Si2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.935502.v1
title: DMTCP: Bringing Checkpoint-Restart to Python

description: DMTCP (Distributed MultiThreaded CheckPointing) is a mature checkpoint-restart package. It operates in user-space without kernel privilege, and adapts to application-specific requirements through plugins. While DMTCP has been able to checkpoint Python and IPython "from the outside" for many years, a Python module has recently been created to support DMTCP. IPython support is included through a new DMTCP plugin. A checkpoint can be requested interactively within a Python session, or under the control of a specific Python program. Further, the Python program can execute specific Python code prior to checkpoint, upon resuming (within the original process), and upon restarting (from a checkpoint image). Applications of DMTCP are demonstrated for: (i) Python-based graphics using VNC; (ii) a Fast/Slow technique to use multiple hosts or cores to check one Cython computation in parallel; and (iii) a reversible debugger, FReD, with a novel reverse-expression watchpoint feature for locating the cause of a bug.
DOI: 10.6084/m9.figshare.935503
title: Multidimensional Data Exploration with Glue

description: Modern research projects incorporate data from several sources, and new insights are increasingly driven by the ability to interpret data in the context of other data. Glue is an interactive environment built on top of the standard Python science stack to visualize relationships within and between datasets. With Glue, users can load and visualize multiple related datasets simultaneously. Users specify the logical connections that exist between data, and Glue transparently uses this information as needed to enable visualization across files. This functionality makes it trivial, for example, to interactively overplot catalogs on top of images. The central philosophy behind Glue is that the structure of research data is highly customized and problem-specific. Glue aims to accommodate this and simplify the "data munging" process, so that researchers can more naturally explore what their data have to say. The result is a cleaner scientific workflow, faster interaction with data, and an easier avenue to insight.
DOI: 10.6084/m9.figshare.935573.v1
title: Pine and Serotiny

description: Analysis of simulation data for the ms "Evolution of serotiny in maritime pine Pinus pinaster in the light of increasing frequency of fires", currently submitted to Plant Ecology
DOI: 10.6084/m9.figshare.935503.v1
title: Multidimensional Data Exploration with Glue

description: Modern research projects incorporate data from several sources, and new insights are increasingly driven by the ability to interpret data in the context of other data. Glue is an interactive environment built on top of the standard Python science stack to visualize relationships within and between datasets. With Glue, users can load and visualize multiple related datasets simultaneously. Users specify the logical connections that exist between data, and Glue transparently uses this information as needed to enable visualization across files. This functionality makes it trivial, for example, to interactively overplot catalogs on top of images. The central philosophy behind Glue is that the structure of research data is highly customized and problem-specific. Glue aims to accommodate this and simplify the "data munging" process, so that researchers can more naturally explore what their data have to say. The result is a cleaner scientific workflow, faster interaction with data, and an easier avenue to insight.
DOI: 10.6084/m9.figshare.935573.v2
title: Pine and Serotiny

description: Analysis of simulation data for the ms "Evolution of serotiny in maritime pine Pinus pinaster in the light of increasing frequency of fires", currently submitted to Plant Ecology
DOI: 10.6084/m9.figshare.934318
title: An Alternative Theory of Vacuum and Matter

description: The theory brings back the concept of aether in a new prospective. Aether is a basic substance or the dark matter, which serves as a building material for all other types of matter. The theory also suggests unity in the nature of forces (including gravity), proposes an alternative look at dynamics of space and astronomical bodies, and considers aether and free electrons as factors influencing the weather. It provides answers to some unsolved problems in today’s physics by taking an alternative look at what we know about the vacuum and matter.
DOI: 10.6084/m9.figshare.935573.v4
title: Pine and Serotiny

description: Analysis of simulation data for the ms "Evolution of serotiny in maritime pine Pinus pinaster in the light of increasing frequency of fires", currently submitted to Plant Ecology. Please read the file Vincenzi and Piotti pine sim analysis.r
DOI: 10.6084/m9.figshare.934318.v1
title: An Alternative Theory of Vacuum and Matter

description: The theory brings back the concept of aether in a new prospective. Aether is a basic substance or the dark matter, which serves as a building material for all other types of matter. The theory also suggests unity in the nature of forces (including gravity), proposes an alternative look at dynamics of space and astronomical bodies, and considers aether and free electrons as factors influencing the weather. It provides answers to some unsolved problems in today’s physics by taking an alternative look at what we know about the vacuum and matter.
DOI: 10.6084/m9.figshare.935573.v3
title: Pine and Serotiny

description: Analysis of simulation data for the ms "Evolution of serotiny in maritime pine Pinus pinaster in the light of increasing frequency of fires", currently submitted to Plant Ecology. Please read the file Vincenzi and Piotti pine sim analysis.r
DOI: 10.6084/m9.figshare.934307
title: SensorBench scenarios dataset

description: This dataset comprises the scenario files used by the Sensorbench benchmark, used to compare the performance of in-network query processing and data anlaysis techniques. Each scenario comprises a sensor network determined by several variables including network size, node layout (linear, grid or irregular), node density and proportion of source nodes. The file formats provided are compatible with the Avrora simulator (*.top) and the SNEE query processor (*.xml).
DOI: 10.6084/m9.figshare.934310
title: Results from the Analysis of Raw Video Data

description: Results after analysis of the raw video data. The results for each raw video are contained in individual directories. The structure of the directory tree represents the conditions (different dilutions of myosin were used), days of recording, samples (slides), and videos that were recorded. The data can be analyzed on a per video basis using spreadsheet software, or using methods from our automated video analys software ivma3 (recommended approach, due to large data set size, for more information see https://github.com/lhilbert/ivma3/wiki). For use with ivma3, a ready-made result bundle is supplied within this data set, which can be directly assessed for detalied analysis via MatLab scripts and utility functions in our ivma3 software.
DOI: 10.6084/m9.figshare.931785
title: Trophic scaling and occupancy analysis reveals a lion population limited by human pressure in the Limpopo National Park, Mozambique.

description: Trophic scaling and occupancy analysis reveals a lion population limited by human pressure in the Limpopo National Park, Mozambique. Authors: Kristoffer T. Everatt1*, Leah Andresen1 , Michael J. Somers1,2 Affiliations: Centre for Wildlife Management, University of Pretoria, Pretoria, South AfricaCentre for Invasion Biology, University of Pretoria, Pretoria, South Africa *To whom correspondence should be addressed: kteveratt@gmail.com Abstract The African lion (Panthera leo) has suffered drastic population and range declines over the last few decades and is listed by the IUCN as vulnerable to extinction. Conservation management requires reliable population estimates, however these data are lacking for many of the continent’s remaining lion populations. It is possible to estimate lion populations using a trophic scaling approach based on relatively easy to obtain aerial prey data. However, such inferences assume that a predator population is subject only to bottom-up regulation, and are thus likely to produce biased estimates in systems with considerable top-down anthropogenic pressures. Here we provide baseline data on the status of lions in a developing National Park in Mozambique that is impacted by humans and livestock. We compare a direct density estimate using call-ups with an estimate derived from trophic scaling. We then use replicated detection/non-detection surveys to estimate the proportion of area occupied by lions, and hierarchical ranking of covariates to provide inferences on the relative contribution of prey resources and anthropogenic factors influencing lion occurrence. Direct density estimates were less than 1/3 of the estimate derived from prey resources (0.99 lions/100 km2 vs. 3.05 lions/100 km2). The proportion of area occupied by lions was Ψ = 0.436 (SE = 0.127), or approximately 44% of a 2400 km2 sample of potential habitat. Although lions were strongly predicted by a greater probability of encountering prey resources, the greatest contributing factor to lion occurrence was a strong negative association with agro-pastoralist settlement areas. Finally, our empirical abundance estimate is approximately a third of a published abundance estimate derived from opinion surveys. Altogether, our results describe a lion population that is held below resource-based carrying capacity by anthropogenic factors, and highlight the limitations of trophic scaling and opinion surveys for estimating predator populations exposed to anthropogenic pressures. Our study provides the first empirical quantification of a population that future change can be measured against.
DOI: 10.6084/m9.figshare.934307.v1
title: SensorBench scenarios dataset

description: This dataset comprises the scenario files used by the Sensorbench benchmark, used to compare the performance of in-network query processing and data anlaysis techniques. Each scenario comprises a sensor network determined by several variables including network size, node layout (linear, grid or irregular), node density and proportion of source nodes. The file formats provided are compatible with the Avrora simulator (*.top) and the SNEE query processor (*.xml).
DOI: 10.6084/m9.figshare.12919286.v1
title: R0195_20171011a_videos

description: Rat 0195, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.931785.v1
title: rophic scaling and occupancy analysis reveals a lion population limited by human pressure

description: Trophic scaling and occupancy analysis reveals a lion population limited by human pressure in the Limpopo National Park, Mozambique. Authors: Kristoffer T. Everatt1*, Leah Andresen1 , Michael J. Somers1,2 Affiliations: Centre for Wildlife Management, University of Pretoria, Pretoria, South AfricaCentre for Invasion Biology, University of Pretoria, Pretoria, South Africa *To whom correspondence should be addressed: kteveratt@gmail.com Abstract The African lion (Panthera leo) has suffered drastic population and range declines over the last few decades and is listed by the IUCN as vulnerable to extinction. Conservation management requires reliable population estimates, however these data are lacking for many of the continent’s remaining lion populations. It is possible to estimate lion populations using a trophic scaling approach based on relatively easy to obtain aerial prey data. However, such inferences assume that a predator population is subject only to bottom-up regulation, and are thus likely to produce biased estimates in systems with considerable top-down anthropogenic pressures. Here we provide baseline data on the status of lions in a developing National Park in Mozambique that is impacted by humans and livestock. We compare a direct density estimate using call-ups with an estimate derived from trophic scaling. We then use replicated detection/non-detection surveys to estimate the proportion of area occupied by lions, and hierarchical ranking of covariates to provide inferences on the relative contribution of prey resources and anthropogenic factors influencing lion occurrence. Direct density estimates were less than 1/3 of the estimate derived from prey resources (0.99 lions/100 km2 vs. 3.05 lions/100 km2). The proportion of area occupied by lions was Ψ = 0.436 (SE = 0.127), or approximately 44% of a 2400 km2 sample of potential habitat. Although lions were strongly predicted by a greater probability of encountering prey resources, the greatest contributing factor to lion occurrence was a strong negative association with agro-pastoralist settlement areas. Finally, our empirical abundance estimate is approximately a third of a published abundance estimate derived from opinion surveys. Altogether, our results describe a lion population that is held below resource-based carrying capacity by anthropogenic factors, and highlight the limitations of trophic scaling and opinion surveys for estimating predator populations exposed to anthropogenic pressures. Our study provides the first empirical quantification of a population that future change can be measured against.
DOI: 10.6084/m9.figshare.931754
title: Spontaneous bacterial peritonitis outcome and ceftriaxone dosage data

description: Anonymized outcome data from medical records of patients treated with ceftriaxone for spontaneous bacterial peritonitis at the Beth Israel Deaconess Medical Center, Boston, USA, between January 2003 and December 2011. Exclusion criteria from dataset were: &lt;250 neutrophils in ascites, prior liver transplant, evidence of intra-abdominal source of infection (abscess, perforation, recent (within 2 weeks) intra-abdominal surgery), peritoneal dialysis and documentation of a secondary infection (urinary tract infection, pneumonia, blood stream infection, cellulitis, meningitis) for which ceftriaxone was started prior to peritoneal fluid collection.
DOI: 10.6084/m9.figshare.931754.v1
title: Spontaneous bacterial peritonitis outcome and ceftriaxone dosage data

description: Anonymized outcome data from medical records of patients treated with ceftriaxone for spontaneous bacterial peritonitis at the Beth Israel Deaconess Medical Center, Boston, USA, between January 2003 and December 2011. Exclusion criteria from dataset were: &lt;250 neutrophils in ascites, prior liver transplant, evidence of intra-abdominal source of infection (abscess, perforation, recent (within 2 weeks) intra-abdominal surgery), peritoneal dialysis and documentation of a secondary infection (urinary tract infection, pneumonia, blood stream infection, cellulitis, meningitis) for which ceftriaxone was started prior to peritoneal fluid collection.
DOI: 10.6084/m9.figshare.931750
title: Gaussian Job Archive for C17H15N

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931750.v1
title: Gaussian Job Archive for C17H15N

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931724
title: Gaussian Job Archive for C42H48ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931725
title: Gaussian Job Archive for C42H48ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931741
title: simPH_figures

description: Example figures from the simPH R package.
DOI: 10.6084/m9.figshare.931724.v1
title: Gaussian Job Archive for C42H48ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931741.v1
title: simPH_figures

description: Example figures from the simPH R package.
DOI: 10.6084/m9.figshare.931722
title: Gaussian Job Archive for C33H27CuI2N3P

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931723
title: Gaussian Job Archive for C42H48ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931725.v1
title: Gaussian Job Archive for C42H48ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931720
title: Gaussian Job Archive for C33H27CuI2N3P

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931721
title: Gaussian Job Archive for C33H27CuI2N3P

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931722.v1
title: Gaussian Job Archive for C33H27CuI2N3P

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931723.v1
title: Gaussian Job Archive for C42H48ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.931720.v1
title: Gaussian Job Archive for C33H27CuI2N3P

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.930734
title: Who visits academic institutional repositories and why? An analytical approach for a single high profile repository. Appendix One: Data

description: This is a data appendix for my Master's research report, <em>Who visits academic institutional repositories and why? An analytical approach for a single high profile repository</em>. It is currently being evaluated.
DOI: 10.6084/m9.figshare.931721.v1
title: Gaussian Job Archive for C33H27CuI2N3P

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.930730
title: Disgust and the politics of sex: Exposure to a disgusting odorant increases politically conservative views on sex and decreases support for gay marriage

description: Disgust has been implicated as a potential causal agent underlying socio-political attitudes and behaviors. Several recent studies have suggested that pathogen disgust may be a causal mechanism underlying social conservatism. However, the specificity of this effect is still in question. The present study tested the effects of disgust on a range of policy preferences to clarify whether disgust is generally implicated in political conservatism across public policy attitudes or is uniquely related to specific content domains. Self-reported socio-political attitudes were compared between participants in two experimental conditions: 1) an odorless control condition, and 2) a disgusting odor condition. In keeping with previous research, the present study showed that exposure to a disgusting odor increased endorsement of socially conservative attitudes related to sexuality. In particular, there was a strong and consistent link between induced disgust and less support for gay marriage.
DOI: 10.6084/m9.figshare.930734.v1
title: Appendix One: Data

description: This is a data appendix for my Master's research report, <em>Who visits academic institutional repositories and why? An analytical approach for a single high profile repository</em>. It is currently being evaluated.
DOI: 10.6084/m9.figshare.930734.v2
title: Who visits academic institutional repositories and why? An analytical approach for a single high profile repository. Appendix One: Data

description: This is a data appendix for my Master's research report, <em>Who visits academic institutional repositories and why? An analytical approach for a single high profile repository</em>. It is currently being evaluated, and a link to it will be available soon. Please contact me if you would like further information.
DOI: 10.6084/m9.figshare.930722
title: plant pathogen interactions-html

description: plant pathogen interactions