cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17011295
title: Additional data for "Endemic but not eroded: Genomic distinctiveness and conservation genomics of the British swallowtail butterfly (Papilio machaon britannicus Seitz, 1907)"

description: This is the supplematary data for "Endemic but not eroded: Genomic distinctiveness and conservation genomics of the British swallowtail butterfly (Papilio machaon britannicus Seitz, 1907)"

Information in ReadMe.txt

 

Authors

Benoit Nabholz1,2*, Eliette L. Reboud1,3,, Bérénice J. Lafon1, Adam M. Cotton4, Martin G. Partridge5, N. Mark Collins5 & Fabien L. Condamine1*

Affiliations

1 Institut des Sciences de l’Evolution de Montpellier, Université de Montpellier, CNRS, IRD, Place Eugène Bataillon, 34095 Montpellier, France

2 Institut Universitaire de France, Paris, France

3 Évolution, Génomes, Comportement et Écologie, Université Paris-Saclay, CNRS, IRD, 91190 Gif-sur-Yvette, France

4 86/2 Moo 5, Tambon Nong Kwai, Hang Dong, Chiang Mai, Thailand

5 Swallowtail and Birdwing Butterfly Trust, ℅ Stephenson Smart, Queens Head House, The Street, Acle, Norfolk, NR13 3DY, UK.

Authors for correspondence (*): Benoit Nabholz (benoit.nabholz@umontpellier.fr) and Fabien L. Condamine (fabien.condamine@gmail.com)

 

(In ReadMe.txt)#### Explanation of the content of files and folders

to uncompress archive use tar -xzvf command such as:tar -xzvf Scripts.tar.gz

### ScriptsScripts/ – Folder containing scripts    Script_britannicus.bash – Script to reproduce genomic analyses    britannicus_popGen.R – Script to reproduce figures and statistical analyses

### AssembliesPapilionini_Papilio_machaon_FC3013_pool_megahit_asm_purged.fasta.gz = megahit+purge_dups assembly of FC3013 individualsPapilionini_Papilio_machaon_FC3013_pool_megahit_purged_ragtag_GCF912999745_asm.fasta.gz = RAG-TAG guided assembly using GCF_912999745.1_ilPapMach1.1 assembly as guide

### Data    All_machaon_noindels_nosexchr.recode.vcf.gz – VCF with all individuals, without indels and sex chromosomes    All_machaon_Q200_noindels_goodSNP_nomissing_nosexchr.vcf.gz – VCF after filtering for high-quality SNPs

    Analyses/        GADMA/ – GADMA analysis folder        Geno/ – Geno files for PCA analyses        PnPs/ – Results of the Pn/Ps analyses        RoH/ – Results of the RoH analyses        Scan/ – Population genetics statistics        SNPEFF/ – Results of the SNPEFF SNP annotation        Treemix/ – Treemix analysis folder

    Fasta/ – Whole-genome alignments split into 100 kb windows    FastaCDS/ – CDS alignments    Heterozygosity/ – Results of the heterozygosity analysis    ncbi_dataset/ – Papilio machaon annotations downloaded from NCBI and used in SNPEFF    Papilio_machaon_hardmasked.fasta – Repeat-masked reference genome    quantile.cov.txt – File with coverage quantiles
DOI: 10.15468/dl.9cgfpr
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asemeia extraaxillaris"
 ]
}

 The dataset includes 539 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025464-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17053191
title: Deutsche Suchthilfestatistik 2024. Alle Bundesländer. Tabellenband für Typ 1: Ambulante Einrichtungen. Bezugsgruppe: Alle Betreuungen mit Einmalkontakte. 33% Lauf.

description: Dieser unkommentierte Tabellenband enthält die Ergebnisse der Datenauswertung der Deutschen Suchthilfestatistik (DSHS) für das Datenjahr 2024 in ambulanten Suchthilfeeinrichtungen (Typ 1). Die Bezugsgruppe sind alle Betreuungen mit Einmalkontakten. Im vorliegenden Auswertungslauf (Datenfilterung) werden pro Parameter ausschließlich aggregierte Einrichtungsdatensätze einbezogen, deren Anteil fehlender Werte (Missingwerte) weniger als 33 % beträgt.
DOI: 10.5281/zenodo.17053192
title: Deutsche Suchthilfestatistik 2024. Alle Bundesländer. Tabellenband für Typ 1: Ambulante Einrichtungen. Bezugsgruppe: Alle Betreuungen mit Einmalkontakte. 33% Lauf.

description: Dieser unkommentierte Tabellenband enthält die Ergebnisse der Datenauswertung der Deutschen Suchthilfestatistik (DSHS) für das Datenjahr 2024 in ambulanten Suchthilfeeinrichtungen (Typ 1). Die Bezugsgruppe sind alle Betreuungen mit Einmalkontakten. Im vorliegenden Auswertungslauf (Datenfilterung) werden pro Parameter ausschließlich aggregierte Einrichtungsdatensätze einbezogen, deren Anteil fehlender Werte (Missingwerte) weniger als 33 % beträgt.
DOI: 10.15468/dl.nysu2b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Curruca communis",
 "Country is one of (Myanmar, Thailand, Lao People’s Democratic Republic, Cambodia, Viet Nam, Malaysia)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025466-250827131500795/datasets/export for details.
DOI: 10.6084/m9.figshare.30051412
title: Dataset: Three‐dimensional electro‐anatomical mapping of premature atrial complexes originating from the right atrial free wall and treatment by radiofrequency ablation in three horses

description: Dataset
DOI: 10.6084/m9.figshare.30051412.v1
title: Dataset: Three‐dimensional electro‐anatomical mapping of premature atrial complexes originating from the right atrial free wall and treatment by radiofrequency ablation in three horses

description: Dataset
DOI: 10.15468/dl.rxa7we
title: Occurrence Download

description: A dataset containing 195 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pycnostachys meyeri",
 "Geometry POLYGON ((-17.62504 -34.81917, 51.13387 -34.81917, 51.13387 37.34999, -17.62504 37.34999, -17.62504 -34.81917))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 195 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025467-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12958967
title: Public Opinion on Climate Change (Updated Daily)
DOI: 10.15468/dl.uxtqhr
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Harrisia martinii",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 48 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025469-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpe8jg
title: Occurrence Download

description: A dataset containing 542 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ampelopsis cantoniensis"
 ]
}

 The dataset includes 542 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025468-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cm43n6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Curruca conspicillata",
 "Country is one of (Myanmar, Thailand, Lao People’s Democratic Republic, Cambodia, Viet Nam, Malaysia)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025470-250827131500795/datasets/export for details.
DOI: 10.5281/zenodo.17053243
title: KomodoTrip POIs Dataset
DOI: 10.5281/zenodo.17053242
title: KomodoTrip POIs Dataset
DOI: 10.7910/dvn/kepniv
title: Low-Frequency Accelerometer for Control Systems

description: No
DOI: 10.15468/dl.qc68mx
title: Occurrence Download

description: A dataset containing 691 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvia merjamie",
 "Geometry POLYGON ((-17.62504 -34.81917, 51.13387 -34.81917, 51.13387 37.34999, -17.62504 37.34999, -17.62504 -34.81917))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 691 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025472-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etxsbk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Harrisia pomanensis",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025474-250827131500795/datasets/export for details.
DOI: 10.15468/dl.kzg34e
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Harrisia pomanensis",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025473-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rey5jp
title: Occurrence Download

description: A dataset containing 5398 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erechtites hieracifolia"
 ]
}

 The dataset includes 5398 records from 262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025471-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zuxd8p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Curruca sarda",
 "Country is one of (Myanmar, Thailand, Lao People’s Democratic Republic, Cambodia, Viet Nam, Malaysia)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025475-250827131500795/datasets/export for details.
DOI: 10.15468/dl.vxstgq
title: Occurrence Download

description: A dataset containing 5814500 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Magnoliopsida",
 "Country is Norway",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 5814500 records from 295 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025441-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4zjpy
title: Occurrence Download

description: A dataset containing 8441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "Sex is one of (Male, Female, Mixed, Indeterminate)",
 "TaxonKey is Colias palaeno"
 ]
}

 The dataset includes 8441 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025476-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17053143
title: 8-day 1-km GPP, TER and NEE maps over peninsular Spain for 2000-2022

description: Gross Primary Production (GPP), Total Ecosystem Respiration (TER) and Net Ecosystem Exchange (NEE) maps.band 1: GPP, band 2: TER, band 3: NEEProjection: geographic WGS84Spatial resolution: 0.01 degTemporal resolution: 8 daysUnits: kg/m2/dMethodology: https://doi.org/10.1109/JSTARS.2024.3413184

The CC0 license only applies for the included sample. If you are interested in the rest of the dataset, please contact sergio.sanchez@uv.es.
DOI: 10.5281/zenodo.17053144
title: 8-day 1-km GPP, TER and NEE maps over peninsular Spain for 2000-2022

description: Gross Primary Production (GPP), Total Ecosystem Respiration (TER) and Net Ecosystem Exchange (NEE) maps.band 1: GPP, band 2: TER, band 3: NEEProjection: geographic WGS84Spatial resolution: 0.01 degTemporal resolution: 8 daysUnits: kg/m2/dMethodology: https://doi.org/10.1109/JSTARS.2024.3413184

The CC0 license only applies for the included sample. If you are interested in the rest of the dataset, please contact sergio.sanchez@uv.es.
DOI: 10.15468/dl.wkh7qr
title: Occurrence Download

description: A dataset containing 24628 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Sedum annuum"
 ]
}

 The dataset includes 24628 records from 264 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025478-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eavsag
title: Occurrence Download

description: A dataset containing 14698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Sedum alpestre"
 ]
}

 The dataset includes 14698 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025479-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4379d
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "IucnRedListCategory is VU",
 "OccurrenceStatus is Present",
 "StateProvince is Casanare",
 "TaxonKey is Cedrela odorata L."
 ]
}

 The dataset includes 44 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011155-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rs2zrd
title: Occurrence Download

description: A dataset containing 1180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Juglans ailantifolia Carrière"
 ]
}

 The dataset includes 1180 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011157-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytd5p6
title: Occurrence Download

description: A dataset containing 42187 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Setophaga chrysoparia (P.L.Sclater & Salvin, 1860)"
 ]
}

 The dataset includes 42187 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011156-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbbpzy
title: Occurrence Download

description: A dataset containing 325755 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Lemna minor L.)"
 ]
}

 The dataset includes 325755 records from 1674 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011154-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ka4q9
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.88274 5.53669,-75.8411 5.51089,-75.79463 5.51015,-75.74494 5.51578,-75.70928 5.5376,-75.70673 5.58613,-75.71861 5.62556,-75.77113 5.65038,-75.83678 5.65692,-75.88668 5.62425,-75.89587 5.57198,-75.88274 5.53669))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 190 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022626-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cv725z
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clastopus vestitus (Desv.) Boiss."
 ]
}

 The dataset includes 91 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003787-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zcrxtg
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "StateProvince is Zacatecas",
 "TaxonKey is Cophosaurus texanus Troschel, 1852"
 ]
}

 The dataset includes 33 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002613-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ymjiyh
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-67.44177 18.74823,-67.41541 17.59586,-64.25134 17.52882,-64.13709 17.98918,-64.84021 18.07276,-64.79626 18.70661,-67.44177 18.74823))",
 "HasCoordinate is true",
 "TaxonKey is Homalium racemosum Jacq.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 63 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014238-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtqxw7
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cloezia buxifolia Brongn. & Gris"
 ]
}

 The dataset includes 161 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003836-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrzhm9
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dipterocarpus grandiflorus (Blanco) Blanco"
 ]
}

 The dataset includes 407 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126614-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xzyci
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia nilotica Schumach. & Thonn.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 107 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014236-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6sbqw
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Intermountain Herbarium (Vasc. & Algae)",
 "Issue is Coordinate uncertainty meters invalid"
 ]
}

 The dataset includes 66 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0114697-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.37326c
title: Occurrence Download

description: A dataset containing 446 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cloezia floribunda Brongn. & Gris"
 ]
}

 The dataset includes 446 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003856-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ryqvwq
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dulacia singularis Vell."
 ]
}

 The dataset includes 77 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014236-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9gjwr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polytrichastrum sexangulare (Flörke ex Brid.) G.L.Sm.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136808-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6qjv26
title: Occurrence Download

description: A dataset containing 1769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Intermountain Herbarium (Vasc. & Algae)",
 "Issue is Taxon match higher rank"
 ]
}

 The dataset includes 1769 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0114685-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnkpe6
title: Occurrence Download

description: A dataset containing 1104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cola nitida (Vent.) Schott & Endl."
 ]
}

 The dataset includes 1104 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003891-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6h8w7
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acalypha seminuda Müll.Arg."
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136809-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.