cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14369540
title: The International Space Station Has a Unique and Extreme Microbial and Chemical Environment Driven by Use Patterns

description: Space habitation provides unique challenges in built environments isolated from Earth. We produced a 3D map of the microbes and metabolites throughout the United States Orbital Segment (USOS) of the International Space Station (ISS), with 803 samples collected during space flight, including controls. We find that the use of each of the nine sampled modules within the ISS strongly drives the microbiology and chemistry of the habitat. Relating the microbiology to other Earth habitats, we find that, as with human microbiota, built environment microbiota also align naturally along an axis of industrialization, with the ISS providing an extreme example of an industrialized environment. We demonstrate the utility of culture-independent sequencing for microbial risk monitoring, especially as the location of sequencing moves to space. The resulting resource of chemistry and microbiology in the space-built environment will guide long-term efforts to maintain human health in space for longer durations.
DOI: 10.5281/zenodo.14369541
title: The International Space Station Has a Unique and Extreme Microbial and Chemical Environment Driven by Use Patterns

description: Space habitation provides unique challenges in built environments isolated from Earth. We produced a 3D map of the microbes and metabolites throughout the United States Orbital Segment (USOS) of the International Space Station (ISS), with 803 samples collected during space flight, including controls. We find that the use of each of the nine sampled modules within the ISS strongly drives the microbiology and chemistry of the habitat. Relating the microbiology to other Earth habitats, we find that, as with human microbiota, built environment microbiota also align naturally along an axis of industrialization, with the ISS providing an extreme example of an industrialized environment. We demonstrate the utility of culture-independent sequencing for microbial risk monitoring, especially as the location of sequencing moves to space. The resulting resource of chemistry and microbiology in the space-built environment will guide long-term efforts to maintain human health in space for longer durations.
DOI: 10.6084/m9.figshare.c.3653924_d1.v1
title: Additional file 13: of Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

description: List of seven COG-groups associated with the ability to infect dicots (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3653963_d1.v1
title: Additional file 5: Table S1. of Evolution of mitochondrial genomes in Baikalian amphipods

description: Primers used for amplification of Baikalian amphipod mitochondrial genomes. Table S2. Accession numbers of amphipod mitochondrial genomes from GenBank database used in the study (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3653960_d2.v1
title: Additional file 1: Table S1. of Analysis of molecular networks and targets mining of Chinese herbal medicines on anti-aging

description: The data sets of all collected targets. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3653924_d7.v1
title: Additional file 4: of Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

description: Pairwise ANI values for the strains of phylogroup 29 (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3653960_d3.v1
title: Additional file 2: Table S2. of Analysis of molecular networks and targets mining of Chinese herbal medicines on anti-aging

description: The top five interaction networks involved by targets of Kidney-tonifying Herbal Medicines. (XLS 17 kb)
DOI: 10.6084/m9.figshare.c.3653924_d8.v1
title: Additional file 3: of Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

description: Main morphological, cultural, and biochemical properties of the Pseudomonas syringae bacterial strains isolated from sunflower and wheat in different regions of the Russian Federation (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3653963_d3.v1
title: Additional file 7: of Evolution of mitochondrial genomes in Baikalian amphipods

description: Nucleotide composition statistics for ribosomal RNA genes in mitochondrial genomes of studied Baikalian amphipods. Bold numbers indicate incomplete sequences. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3653933_d7.v1
title: Additional file 4: Table S1. of Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group

description: Details on gene, site sampling, and data sources per taxon used in our phylogenomic dataset. (XLSX 86 KB)
DOI: 10.6084/m9.figshare.c.3653960_d4.v1
title: Additional file 4: Table S4 of Analysis of molecular networks and targets mining of Chinese herbal medicines on anti-aging

description: Mining results of kidney Yang-Tonifying Chinese Herbal Medicines. (XLS 222 kb)
DOI: 10.6084/m9.figshare.c.3653924_d9.v1
title: Additional file 1: of Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

description: Results of the artificial inoculation of plants with Pseudomonas syringae strains 1845 and 2507 (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3653972_d2.v1
title: Additional file 1: of Molecular determinants of the adrenal gland functioning related to stress-sensitive hypertension in ISIAH rats

description: Genes differentially expressed in adrenal glands of 3Â month old hypertensive ISIAH and normotensive control WAG rats. (XLS 214 kb)
DOI: 10.6084/m9.figshare.c.3653960_d5.v1
title: Additional file 5: Table S5. of Analysis of molecular networks and targets mining of Chinese herbal medicines on anti-aging

description: Mining results of kidney Yin-Tonifying Chinese Herbal Medicines. (XLS 605 kb)
DOI: 10.6084/m9.figshare.c.3653924_d11.v1
title: Additional file 12: of Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

description: Distribution of mobile elements among the strains of phylogroup 2 (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3653972_d3.v1
title: Additional file 3: of Molecular determinants of the adrenal gland functioning related to stress-sensitive hypertension in ISIAH rats

description: The genes with the detected expression in adrenal gland of only one rat strain. (XLS 17 kb)
DOI: 10.6084/m9.figshare.c.3654728_d2.v1
title: Additional file 3: of Interventions and assessment tools addressing key concepts people need to know to appraise claims about treatment effects: a systematic mapping review

description: Overview of all included studies. (XLSX 133 kb)
DOI: 10.15468/dl.256au8
title: Occurrence Download

description: A dataset containing 3372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parambassis siamensis (Fowler, 1937), Pristolepis fasciata (Bleeker, 1851), Esomus metallicus Ahl, 1923)",
 "Year is not null",
 {
 "not" : {
 "Issue" : [
 "is one of (Recorded date invalid, Taxon match fuzzy, Taxon match higher rank)"
 ]
 }
 }
 ]
}

 The dataset includes 3372 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038021-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3654740_d2.v1
title: Additional file 1: Table S1. of Influence of maternal breast milk ingestion on acquisition of the intestinal microbiome in preterm infants

description: Per sample key metadata parameters. Table S2. Per sample Shannon diversity indices. Table S3. Mean taxa relative abundance values by postnatal time and birth weight class. Table S4. Mean taxa relative abundance values by birth weight class alone. (XLS 106 kb)
DOI: 10.15468/dl.n8c38u
title: Occurrence Download

description: A dataset containing 2658 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Urbanus teleus (Hübner, 1821)"
 ]
}

 The dataset includes 2658 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038022-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3656867_d2
title: MOESM2 of The plant leaf movement analyzer (PALMA): a simple tool for the analysis of periodic cotyledon and leaf movement in Arabidopsis thaliana

description: Additional file 2. Programme files.
DOI: 10.6084/m9.figshare.c.3656870_d2.v1
title: MOESM2 of Comparative analysis of gene expression patterns in the arthropod labrum and the onychophoran frontal appendages, and its implications for the arthropod head problem

description: Additional file 2: Table S2. Accession numbers for genes used in the phylogenetic analysis.
DOI: 10.6084/m9.figshare.c.3656870_d2
title: MOESM2 of Comparative analysis of gene expression patterns in the arthropod labrum and the onychophoran frontal appendages, and its implications for the arthropod head problem

description: Additional file 2: Table S2. Accession numbers for genes used in the phylogenetic analysis.
DOI: 10.15468/dl.8rut4u
title: Occurrence Download

description: A dataset containing 3372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parambassis siamensis (Fowler, 1937), Pristolepis fasciata (Bleeker, 1851), Esomus metallicus Ahl, 1923)",
 "Year is not null",
 {
 "not" : {
 "Issue" : [
 "is one of (Recorded date invalid, Taxon match fuzzy, Taxon match higher rank)"
 ]
 }
 }
 ]
}

 The dataset includes 3372 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038024-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28049663
title: SRQR of "Anticancer Activity of Ethanolic Extract<i> </i><i>Ocimum</i><i> </i><i>sanctum</i> Leaves on the 4T1 Mammary Cancer Cells through Intrinsic Pathways of Apoptotic"

description: This data contain of Standar of Reporting Qualitative Report (SRQR) for manuscript entitled "Anticancer Activity of Ethanolic Extract<i> </i><i>Ocimum </i><i>sanctum</i> Leaves on the 4T1 Mammary Cancer Cells through Intrinsic Pathways of Apoptotic"
DOI: 10.6084/m9.figshare.28049663.v1
title: SRQR of "Anticancer Activity of Ethanolic Extract<i> </i><i>Ocimum</i><i> </i><i>sanctum</i> Leaves on the 4T1 Mammary Cancer Cells through Intrinsic Pathways of Apoptotic"

description: This data contain of Standar of Reporting Qualitative Report (SRQR) for manuscript entitled "Anticancer Activity of Ethanolic Extract<i> </i><i>Ocimum </i><i>sanctum</i> Leaves on the 4T1 Mammary Cancer Cells through Intrinsic Pathways of Apoptotic"
DOI: 10.15468/dl.zuvtj3
title: Occurrence Download

description: A dataset containing 906 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is one of (Image, Video)",
 "TaxonKey is Lynx lynx (Linnaeus, 1758)"
 ]
}

 The dataset includes 906 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038023-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3656915_d2.v1
title: Additional file 4 of Placental transcriptome co-expression analysis reveals conserved regulatory programs across gestation

description: Predicted transcription factos for each co-expression module. Comma-seperated values file Top 10 predicted transcription factors for each co-expression module. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3656948_d1
title: Additional file 1: Table S1. of Horizontal gene transfer drives the evolution of Rh50 permeases in prokaryotes

description: Phyletic pattern of RH50 homologs in bacterial and archaeal genomes. Table S2. Taxonomic distribution of RH50 and AMT homologs in euryarchaeal methanogens. Table S3. Taxonomic distribution of RH50 and AMT homologs in Planctomycetes and Geobacter Genus. Table S4. The dataset of 121 RH50 chromosomal neighbours. (XLSX 127Â kb)
DOI: 10.6084/m9.figshare.c.3656954_d1
title: Additional file 2: of The transcriptome of the mosquito Aedes fluviatilis (Diptera: Culicidae), and transcriptional changes associated with its native Wolbachia infection

description: Contigs of Wolbachia origin. List of contigs identified as being from Wolbachia pipientis. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3656915_d4
title: Additional file 3 of Placental transcriptome co-expression analysis reveals conserved regulatory programs across gestation

description: Co-expression module gene ontology terms. Comma-seperated values file. The results of gene ontology analyses for each co-expression module. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3656945_d2.v1
title: Additional file 2 of ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data

description: Simulated data (TAR.GZ 7.4Gb)
DOI: 10.6084/m9.figshare.c.3656948_d2
title: Additional file 4: Table S5. of Horizontal gene transfer drives the evolution of Rh50 permeases in prokaryotes

description: HGT frequencies among prokaryotes. Table S6. HGT frequencies from Bacteria to Eukaryota HGT. Table S7. HGT frequencies from Eukaryota to Bacteria. Table S8. HGT frequencies from Bacteria to Eukaryota + Archaea. Table S9. HGT frequencies from Eukaryota + Archaea to Bacteria. Table S10. HGT frequencies between Aerobes and Anaerobes. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3656945_d2
title: Additional file 2 of ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data

description: Simulated data (TAR.GZ 7.4Gb)
DOI: 10.6084/m9.figshare.c.3656945_d3.v1
title: Additional file 6 of ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data

description: Common chimeras between human and mouse (TSV 52kb)
DOI: 10.6084/m9.figshare.c.3656948_d7.v1
title: Additional file 7: of Horizontal gene transfer drives the evolution of Rh50 permeases in prokaryotes

description: Multiple sequence alignment of Rh50 protein dataset (after trimming). (PHY 38Â kb)
DOI: 10.6084/m9.figshare.c.3656948_d7
title: Additional file 7: of Horizontal gene transfer drives the evolution of Rh50 permeases in prokaryotes

description: Multiple sequence alignment of Rh50 protein dataset (after trimming). (PHY 38Â kb)
DOI: 10.15468/dl.yc7rvk
title: Occurrence Download

description: A dataset containing 7058 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Phalaropus tricolor (Vieillot, 1819)"
 ]
}

 The dataset includes 7058 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038025-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3657020_d3.v1
title: Additional file 1: of Asymmetry and integration of cellular morphology in Micrasterias compereana

description: Coordinates of 208 landmarks depicted on cells of Micrasterias compereana. (TXT 231 kb)
DOI: 10.6084/m9.figshare.c.3657020_d3
title: Additional file 1: of Asymmetry and integration of cellular morphology in Micrasterias compereana

description: Coordinates of 208 landmarks depicted on cells of Micrasterias compereana. (TXT 231 kb)
DOI: 10.15468/dl.sk93gr
title: Occurrence Download

description: A dataset containing 11730 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Pheucticus chrysopeplus (Vigors, 1832)"
 ]
}

 The dataset includes 11730 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038026-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3657047_d1.v1
title: MOESM4 of A rapid method to increase transparency and efficiency in web-based searches

description: Additional file 4. Database of search results from organisation website searches for the terms “research” and “report”.
DOI: 10.6084/m9.figshare.c.3657047_d1
title: MOESM4 of A rapid method to increase transparency and efficiency in web-based searches

description: Additional file 4. Database of search results from organisation website searches for the terms “research” and “report”.
DOI: 10.6084/m9.figshare.c.3657047_d3.v1
title: MOESM5 of A rapid method to increase transparency and efficiency in web-based searches

description: Additional file 5. Database of search results from Google Scholar title and full text searches for tillage systematic review case study.
DOI: 10.15468/dl.bkwcpd
title: Occurrence Download

description: A dataset containing 3372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parambassis siamensis (Fowler, 1937), Pristolepis fasciata (Bleeker, 1851), Esomus metallicus Ahl, 1923)",
 "Year is not null",
 {
 "not" : {
 "Issue" : [
 "is one of (Recorded date invalid, Taxon match fuzzy, Taxon match higher rank)"
 ]
 }
 }
 ]
}

 The dataset includes 3372 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038028-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3657074_d1
title: MOESM1 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

description: Additional file 1:Â Supplemental Tables. Table S1. Primers used in this study. Table S2. Calculations of electron balance for strains with and without added acetate. Table S3. Analysis of mutations present in strains relative to the published wild type sequence.
DOI: 10.6084/m9.figshare.c.3657074_d2.v1
title: MOESM6 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

description: Additional file 6: Data set S4. Acetylation analysis of Î hydG and â  hydGâ  ech strains. Acetylation of the proteins in mutants were compared to wild type in the presence or absence of acetate.
DOI: 10.6084/m9.figshare.c.3657074_d2
title: MOESM6 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

description: Additional file 6: Data set S4. Acetylation analysis of Î hydG and â  hydGâ  ech strains. Acetylation of the proteins in mutants were compared to wild type in the presence or absence of acetate.
DOI: 10.6084/m9.figshare.c.3657074_d3.v1
title: MOESM4 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

description: Additional file 4: Data set S2. Proteomic analysis of wild type and Î hydG in the presence or absence of acetate. Proteomic analysis of wild type and Î hydG in the presence or absence of acetate. Color code of the p values based on significance, with red indicating highly significant and white non-significant.
DOI: 10.6084/m9.figshare.c.3657074_d3
title: MOESM4 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

description: Additional file 4: Data set S2. Proteomic analysis of wild type and Î hydG in the presence or absence of acetate. Proteomic analysis of wild type and Î hydG in the presence or absence of acetate. Color code of the p values based on significance, with red indicating highly significant and white non-significant.
DOI: 10.6084/m9.figshare.c.3657074_d4.v1
title: MOESM3 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

description: Additional file 3: Data set S1. Hierarchical clustering of gene expression. Genes significantly (p
DOI: 10.6084/m9.figshare.c.3657074_d4
title: MOESM3 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

description: Additional file 3: Data set S1. Hierarchical clustering of gene expression. Genes significantly (p
DOI: 10.6084/m9.figshare.c.3657086_d2.v1
title: Additional file 6 of TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas

description: A spreadsheet file containing 3 sheets: (i) All statistics includes the patient, sample, and aliquot counts for each tumor and experiment type; (ii) Counts for each experiment includes the occurrences of the patients, samples, and aliquots for each experiment (iii) Total counts for each tumor includes the occurrences of the patients, samples, and aliquots for each tumor. (XLSX 29.1 kb)
DOI: 10.15468/dl.n7jne3
title: Occurrence Download

description: A dataset containing 3372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parambassis siamensis (Fowler, 1937), Pristolepis fasciata (Bleeker, 1851), Esomus metallicus Ahl, 1923)",
 "Year is not null",
 {
 "not" : {
 "Issue" : [
 "is one of (Recorded date invalid, Taxon match fuzzy, Taxon match higher rank)"
 ]
 }
 }
 ]
}

 The dataset includes 3372 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038029-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3657107_d1
title: Additional file 3: of Evolutionary history of versatile-lipases from Agaricales through reconstruction of ancestral structures

description: Sequences alignment of the putative ancestral versatile lipases identified. (FAS 5 kb)
DOI: 10.6084/m9.figshare.c.3657107_d2.v1
title: Additional file 2: of Evolutionary history of versatile-lipases from Agaricales through reconstruction of ancestral structures

description: Putative versatile-lipases identified in public genomes from fungi of the order Agaricales. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3657107_d2
title: Additional file 2: of Evolutionary history of versatile-lipases from Agaricales through reconstruction of ancestral structures

description: Putative versatile-lipases identified in public genomes from fungi of the order Agaricales. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3657107_d3.v1
title: Additional file 1: of Evolutionary history of versatile-lipases from Agaricales through reconstruction of ancestral structures

description: Number of putative versatile-lipases found in fungi from the order Agaricales, family and habitat of each fungus. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3657107_d3
title: Additional file 1: of Evolutionary history of versatile-lipases from Agaricales through reconstruction of ancestral structures

description: Number of putative versatile-lipases found in fungi from the order Agaricales, family and habitat of each fungus. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3657131_d2
title: MOESM4 of The effect of small solar powered ‘Bͻkͻͻ’ net fans on mosquito net use: results from a randomized controlled cross-over trial in southern Ghana

description: Additional file 4. Weather (indoor temperature and humidity) data.
DOI: 10.6084/m9.figshare.c.3657131_d2.v1
title: MOESM4 of The effect of small solar powered ‘Bͻkͻͻ’ net fans on mosquito net use: results from a randomized controlled cross-over trial in southern Ghana

description: Additional file 4. Weather (indoor temperature and humidity) data.
DOI: 10.6084/m9.figshare.c.3657146_d1
title: MOESM2 of Microbial communities in pyrene amended soil–compost mixture and fertilized soil

description: Additional file 2. Supporting material on phylotype sequences related to Tables S1, S2, S4, and S5.