cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc27ffy2
title: CCDC 2068504: Experimental Crystal Structure Determination

description: Related Article: Stanislav S. Shatokhin, Vladislav A. Tuskaev, Svetlana Ch. Gagieva, Alina A. Markova, Dmitry I. Pozdnyakov, Gleb L. Denisov, Elizaveta K. Melnikova, Boris M. Bulychev, Eduard T. Oganesyan|2021|New J.Chem.|46|621|doi:10.1039/D1NJ03726A
DOI: 10.5517/ccdc.csd.cc26m6xz
title: CCDC 2044261: Experimental Crystal Structure Determination

description: Related Article: Mariia V. Kniazeva, Alexander S. Ovsyannikov, Beata Nowicka, Nathalie Kyritsakas, Aida I. Samigullina, Aidar T. Gubaidullin, Daut R. Islamov, Pavel V. Dorovatovskii, Elena V. Popova, Sofiya R. Kleshnina, Svetlana E. Solovieva, Igor S. Antipin, Sylvie Ferlay|2022|CrystEngComm|24|330|doi:10.1039/D1CE01361K
DOI: 10.5517/ccdc.csd.cc27vk0p
title: CCDC 2081092: Experimental Crystal Structure Determination

description: Related Article: Yue Sun, Yan Zhou, Wei Bai, Yang Li, Yilun Wang|2021|Chem.Commun.|58|435|doi:10.1039/D1CC05855J
DOI: 10.5517/ccdc.csd.cc2833yg
title: CCDC 2088375: Experimental Crystal Structure Determination

description: Related Article: Yiwei Liu, Xiaoyu Mao, Xiaohui Wang, Jie Bai, Jun Zhang, Xing Feng, Md Monarul Islam, Mark R.J. Elsegood, Chuan-Zeng Wang, Takehiko Yamato|2021|J.Lumin.|243|118653|doi:10.1016/j.jlumin.2021.118653
DOI: 10.5517/ccdc.csd.cc2833zh
title: CCDC 2088376: Experimental Crystal Structure Determination

description: Related Article: Yiwei Liu, Xiaoyu Mao, Xiaohui Wang, Jie Bai, Jun Zhang, Xing Feng, Md Monarul Islam, Mark R.J. Elsegood, Chuan-Zeng Wang, Takehiko Yamato|2021|J.Lumin.|243|118653|doi:10.1016/j.jlumin.2021.118653
DOI: 10.5517/ccdc.csd.cc2855k6
title: CCDC 2090347: Experimental Crystal Structure Determination

description: Related Article: Rudolf Knorr, Monika Knittl|2021|Tetrahedron|102|132500|doi:10.1016/j.tet.2021.132500
DOI: 10.5517/ccdc.csd.cc2833xf
title: CCDC 2088374: Experimental Crystal Structure Determination

description: Related Article: Yiwei Liu, Xiaoyu Mao, Xiaohui Wang, Jie Bai, Jun Zhang, Xing Feng, Md Monarul Islam, Mark R.J. Elsegood, Chuan-Zeng Wang, Takehiko Yamato|2021|J.Lumin.|243|118653|doi:10.1016/j.jlumin.2021.118653
DOI: 10.5517/ccdc.csd.cc289jgl
title: CCDC 2094529: Experimental Crystal Structure Determination

description: Related Article: Erin T. Chernick, Maryam F. Abdollahi, Zahra A. Tabasi, Marc J. Junge, Yuming Zhao|2021|New J.Chem.|46|572|doi:10.1039/D1NJ04274B
DOI: 10.5066/p9u4rye1
title: A Novel Gonadotropic Microsporidian Parasite (Microsporidium clinchi n. sp.) Infecting a Declining Population of Pheasantshell Mussels (Actinonaias pectorosa) (Unioinidae) from the Clinch River, USA

description: Freshwater mussels of the order Unionida are among the most endangered animal groups globally, but the causes of population declines are often enigmatic with little known about the role of disease. In 2018, we collected wild adult pheasantshell (Actinonaias pectorosa) and mucket (Actinonaias ligamentina) during an epidemiologic survey investigating an ongoing mussel mass mortality event in the Clinch River, USA. Histopathology and transmission electron microscopy showed a novel microsporidian parasite primarily infecting the ovary of pheasantshell. Sequencing of the small subunit rRNA gene produced a 1333 bp sequence with greatest similarity to Pseudonosema cristatellae (AF484694.1; 86.36%; e-value = 0), a microsporidium infecting the freshwater bryozoan (Cristatella mucedo). Microsporidia were observed in 65% (17/26) of the examined female pheasantshell (A. pectorosa) and in no (0/2) female mucket (A. ligamentina), and occurred at mortality and non-mortality sites. Our findings indicate that a novel parasite, Microsporidium clinchi n. sp., is present in pheasantshell in the Clinch River, USA, and while likely not a cause of mass mortality, could reduce fecundity and recruitment in this declining population and threaten the success of reintroductions. Surveillance for M. clinchi n. sp. and evaluation of brood stock and their progeny for microsporidia would therefore be prudent.
DOI: 10.6073/pasta/18390a7d0adbec9aa7d1e01efeccfd76
title: Aboveground biomass on and around gopher mounds 2017:Experiment 014 - Successional Dynamics on a Resampled Chronosequence

description: The purpose of this observational study is to describe the dynamics of ecosystem succession. The change in the number, type, and amount of plant and grazing animal species is monitored in more than 20 fields. These fields were previously cultivated, but then abandoned from agriculture at various times in the past. The fields were left undisturbed for plants to develop from seeds within the soil or brought into the fields by wind or animals. Permanent transects have been established in these abandoned fields for purposes of sampling in a consistent location from year to year. Permanent plots along these transects have been used to sample soil nutrients, (in particular, nitrogen) abundance of vegetation, species composition and herbivore populations. The sampling occurs approximately every 6 years. In the initial survey, 100 quadrats of size 1 by 0.5 m were sampled per field in 23 different fields. Abandoned fields included in E014 are 4, 5, 10, 21, 24, 26, 27, 28, 32, 35, 39, 40, 41, 44, 45, 47, 53, 70, 72, 76, 77. Fields 22(B), 29(A), and 69(C) were originally included in E014 but used for other purposes shortly after the start of the study. This experiment was established in 1983 and 1989 by principal investigators Johannes Knops and David Tilman. Past work at CDR and elsewhere has demonstrated an overriding influence of fire frequency in maintaining prairie openings and oak savanna at the prairie-forest border. Fire regimes harm some types of species while favoring others and drive light and nutrient dynamics, which in turn drive community functional attributes and diversity levels. Ultimately, fire frequency interacts with climate, N deposition, land use, and biotic invasion to determine the outcomes of tree-grass interactions and the dynamics of vegetation at ecotones such as the prairie-forest border in Minnesota. In 2006 each field was divided in half, and one half randomly chosen for periodic prescribed burning (a fire every other year). We anticipate that the burned half will continue succession to prairie grassland while the unburned half will become white pine stands if seed sources are nearby, or will otherwise undergo extremely slow succession to oaks.
DOI: 10.6073/pasta/265f32b8acc6e5ff0fde44e98467462e
title: In situ soil N mineralization in gopher mounds and soil under gopher mounds:Experiment 014 - Successional Dynamics on a Resampled Chronosequence

description: The purpose of this observational study is to describe the dynamics of ecosystem succession. The change in the number, type, and amount of plant and grazing animal species is monitored in more than 20 fields. These fields were previously cultivated, but then abandoned from agriculture at various times in the past. The fields were left undisturbed for plants to develop from seeds within the soil or brought into the fields by wind or animals. Permanent transects have been established in these abandoned fields for purposes of sampling in a consistent location from year to year. Permanent plots along these transects have been used to sample soil nutrients, (in particular, nitrogen) abundance of vegetation, species composition and herbivore populations. The sampling occurs approximately every 6 years. In the initial survey, 100 quadrats of size 1 by 0.5 m were sampled per field in 23 different fields. Abandoned fields included in E014 are 4, 5, 10, 21, 24, 26, 27, 28, 32, 35, 39, 40, 41, 44, 45, 47, 53, 70, 72, 76, 77. Fields 22(B), 29(A), and 69(C) were originally included in E014 but used for other purposes shortly after the start of the study. This experiment was established in 1983 and 1989 by principal investigators Johannes Knops and David Tilman. Past work at CDR and elsewhere has demonstrated an overriding influence of fire frequency in maintaining prairie openings and oak savanna at the prairie-forest border. Fire regimes harm some types of species while favoring others and drive light and nutrient dynamics, which in turn drive community functional attributes and diversity levels. Ultimately, fire frequency interacts with climate, N deposition, land use, and biotic invasion to determine the outcomes of tree-grass interactions and the dynamics of vegetation at ecotones such as the prairie-forest border in Minnesota. In 2006 each field was divided in half, and one half randomly chosen for periodic prescribed burning (a fire every other year). We anticipate that the burned half will continue succession to prairie grassland while the unburned half will become white pine stands if seed sources are nearby, or will otherwise undergo extremely slow succession to oaks.
DOI: 10.6073/pasta/42ed34a9d6af521c83fc1655349177b3
title: Gopher mounds coordinates on a Resampled Chronosequence

description: Soil carbon (C) sequestration rates vary widely in abandoned agricultural lands, and factors determining this variation, beyond climate, soil type, and productivity, are poorly understood. One such factor is soil disturbance by burrowing mammals. Despite being ubiquitous in all grasslands, the impact of burrowing mammals on soil C dynamics is not well understood. We quantified the major ecosystem processes that are influenced by one such burrowing mammal, plains pocket gophers (Geomys bursarius), in old field ecosystems located in east-central Minnesota, USA. We found pocket gopher abundance varied among old fields, and newly formed gopher mounds covered up to 6% of the soil surface annually. We first measured short-term C pools and fluxes changes induced by gopher activities. Soil N mineralization did not differ between the soil in gopher mounds and undisturbed soil. However, for the soil under gopher mounds, N mineralization was 30% lower as compared to the undisturbed soil. We developed a process model to simulate the long-term gopher disturbance impact on old field soil C accumulation. This simulation showed that pocket gophers reduce both the rate of soil C accumulation and the total C pool. This reduction is primarily driven by reduced plant C input due to the time it requires for the vegetation to recolonize gopher mounds. Soil organic matter (SOM) decomposition changes had only a minor impact. The process model showed that the depth from which burrowing mammals redistribute soil to the surface is a key factor determining the overall impact on SOM. In total, our study indicates that soil disturbance by burrowing animals can significantly reduce C storage in old field ecosystems when the mammals are mostly active in surface soil and can be a significant factor in decreasing overall C sequestration after land abandonment. However, at our study site, gopher abundance decreases with abandonment age, likely cause by successional vegetation changes, thus the gopher disturbance induced reduction in soil C is transient and decreases with abandonment age.
DOI: 10.6073/pasta/b1dd62216ee0b281b8109f3081e455f3
title: Soil carbon flux: BioCON : Biodiversity, Elevated CO2, and N Enrichment

description: BioCON (Biodiversity, CO2, and Nitrogen) is an ecological experiment started in 1997 at the University of Minnesota's Cedar Creek Ecosystem Science Reserve. BioCON's goal is to explore the ways in which plant communities will respond to three environmental changes that are known to be occurring on a global scale: increasing nitrogen deposition, increasing atmospheric CO2, and decreasing biodiversity. Why Biodiversity, CO2, and Nitrogen? While there are many uncertainties in global change biology, there are also some well documented facts. Some of these are: 1. The amount of carbon dioxide (CO2) in the atmosphere is rising. Since the industrial revolution, the CO2 concentration in the atmosphere has increased from approximately 275 parts per million (ppm) to about 378 ppm today. This has been largely the result of fossil fuel burning. It is expected that CO2 levels will continue to rise, and that by the year 2050 these levels will be approximately 550 ppm. CO2 is the raw material for photosynthesis and is known to affect plant growth and development. 2. The amount of nitrogen moving through terrestrial ecosystems has increased in the recent past. While natural "background" levels of nitrogen fixation have remained constant, human additions to the system through fertilizer production and fossil fuel use have increased dramatically. Nitrogen is a key nutrient for plant growth and plays a critical role in plant community structure and composition in many environments. 3. Biodiversity levels are falling. While the research and data are not as complete as they are for CO2 and nitrogen, data indicate that the number of species globally, is being reduced. Perhaps more important for ecosystem function, diversity levels on local to regional scales have fallen due to land use change, biotic invasion and many other drivers. While much is known about how each of these factors affects ecosystem functioning, many questions remain. There is also little data on how these issues affect each other, and what emergent qualities may arise when systems are exposed to these changes simultaneously. BioCON seeks to address these issues with this multi-year study at Cedar Creek Ecosytem Science Preserve.
DOI: 10.6073/pasta/bef34a71f50629a2a1ea4ee5f7c63ded
title: Soil percent nitrogen and carbon: BioCON : Biodiversity, Elevated CO2, and N Enrichment

description: BioCON (Biodiversity, CO2, and Nitrogen) is an ecological experiment started in 1997 at the University of Minnesota's Cedar Creek Ecosystem Science Reserve. BioCON's goal is to explore the ways in which plant communities will respond to three environmental changes that are known to be occurring on a global scale: increasing nitrogen deposition, increasing atmospheric CO2, and decreasing biodiversity. Why Biodiversity, CO2, and Nitrogen? While there are many uncertainties in global change biology, there are also some well documented facts. Some of these are: 1. The amount of carbon dioxide (CO2) in the atmosphere is rising. Since the industrial revolution, the CO2 concentration in the atmosphere has increased from approximately 275 parts per million (ppm) to about 378 ppm today. This has been largely the result of fossil fuel burning. It is expected that CO2 levels will continue to rise, and that by the year 2050 these levels will be approximately 550 ppm. CO2 is the raw material for photosynthesis and is known to affect plant growth and development. 2. The amount of nitrogen moving through terrestrial ecosystems has increased in the recent past. While natural "background" levels of nitrogen fixation have remained constant, human additions to the system through fertilizer production and fossil fuel use have increased dramatically. Nitrogen is a key nutrient for plant growth and plays a critical role in plant community structure and composition in many environments. 3. Biodiversity levels are falling. While the research and data are not as complete as they are for CO2 and nitrogen, data indicate that the number of species globally, is being reduced. Perhaps more important for ecosystem function, diversity levels on local to regional scales have fallen due to land use change, biotic invasion and many other drivers. While much is known about how each of these factors affects ecosystem functioning, many questions remain. There is also little data on how these issues affect each other, and what emergent qualities may arise when systems are exposed to these changes simultaneously. BioCON seeks to address these issues with this multi-year study at Cedar Creek Ecosytem Science Preserve.
DOI: 10.6073/pasta/20d6633c64a977f889cfbe6d2e7a6b84
title: Plant aboveground biomass data: BioCON : Biodiversity, Elevated CO2, and N Enrichment

description: BioCON (Biodiversity, CO2, and Nitrogen) is an ecological experiment started in 1997 at the University of Minnesota's Cedar Creek Ecosystem Science Reserve. BioCON's goal is to explore the ways in which plant communities will respond to three environmental changes that are known to be occurring on a global scale: increasing nitrogen deposition, increasing atmospheric CO2, and decreasing biodiversity. Why Biodiversity, CO2, and Nitrogen? While there are many uncertainties in global change biology, there are also some well documented facts. Some of these are: 1. The amount of carbon dioxide (CO2) in the atmosphere is rising. Since the industrial revolution, the CO2 concentration in the atmosphere has increased from approximately 275 parts per million (ppm) to about 378 ppm today. This has been largely the result of fossil fuel burning. It is expected that CO2 levels will continue to rise, and that by the year 2050 these levels will be approximately 550 ppm. CO2 is the raw material for photosynthesis and is known to affect plant growth and development. 2. The amount of nitrogen moving through terrestrial ecosystems has increased in the recent past. While natural "background" levels of nitrogen fixation have remained constant, human additions to the system through fertilizer production and fossil fuel use have increased dramatically. Nitrogen is a key nutrient for plant growth and plays a critical role in plant community structure and composition in many environments. 3. Biodiversity levels are falling. While the research and data are not as complete as they are for CO2 and nitrogen, data indicate that the number of species globally, is being reduced. Perhaps more important for ecosystem function, diversity levels on local to regional scales have fallen due to land use change, biotic invasion and many other drivers. While much is known about how each of these factors affects ecosystem functioning, many questions remain. There is also little data on how these issues affect each other, and what emergent qualities may arise when systems are exposed to these changes simultaneously. BioCON seeks to address these issues with this multi-year study at Cedar Creek Ecosytem Science Preserve.
DOI: 10.6073/pasta/0115c585f9eef4a3fd1748ad49814b82
title: Plant aboveground biomass carbon and nitrogen: BioCON : Biodiversity, Elevated CO2, and N Enrichment

description: BioCON (Biodiversity, CO2, and Nitrogen) is an ecological experiment started in 1997 at the University of Minnesota's Cedar Creek Ecosystem Science Reserve. BioCON's goal is to explore the ways in which plant communities will respond to three environmental changes that are known to be occurring on a global scale: increasing nitrogen deposition, increasing atmospheric CO2, and decreasing biodiversity. Why Biodiversity, CO2, and Nitrogen? While there are many uncertainties in global change biology, there are also some well documented facts. Some of these are: 1. The amount of carbon dioxide (CO2) in the atmosphere is rising. Since the industrial revolution, the CO2 concentration in the atmosphere has increased from approximately 275 parts per million (ppm) to about 378 ppm today. This has been largely the result of fossil fuel burning. It is expected that CO2 levels will continue to rise, and that by the year 2050 these levels will be approximately 550 ppm. CO2 is the raw material for photosynthesis and is known to affect plant growth and development. 2. The amount of nitrogen moving through terrestrial ecosystems has increased in the recent past. While natural "background" levels of nitrogen fixation have remained constant, human additions to the system through fertilizer production and fossil fuel use have increased dramatically. Nitrogen is a key nutrient for plant growth and plays a critical role in plant community structure and composition in many environments. 3. Biodiversity levels are falling. While the research and data are not as complete as they are for CO2 and nitrogen, data indicate that the number of species globally, is being reduced. Perhaps more important for ecosystem function, diversity levels on local to regional scales have fallen due to land use change, biotic invasion and many other drivers. While much is known about how each of these factors affects ecosystem functioning, many questions remain. There is also little data on how these issues affect each other, and what emergent qualities may arise when systems are exposed to these changes simultaneously. BioCON seeks to address these issues with this multi-year study at Cedar Creek Ecosytem Science Preserve.
DOI: 10.6073/pasta/e4b0ab9dfa9e0fda4440f4e9a1ee1d62
title: Root carbon/nitrogen data: BioCON : Biodiversity, Elevated CO2, and N Enrichment

description: BioCON (Biodiversity, CO2, and Nitrogen) is an ecological experiment started in 1997 at the University of Minnesota's Cedar Creek Ecosystem Science Reserve. BioCON's goal is to explore the ways in which plant communities will respond to three environmental changes that are known to be occurring on a global scale: increasing nitrogen deposition, increasing atmospheric CO2, and decreasing biodiversity. Why Biodiversity, CO2, and Nitrogen? While there are many uncertainties in global change biology, there are also some well documented facts. Some of these are: 1. The amount of carbon dioxide (CO2) in the atmosphere is rising. Since the industrial revolution, the CO2 concentration in the atmosphere has increased from approximately 275 parts per million (ppm) to about 378 ppm today. This has been largely the result of fossil fuel burning. It is expected that CO2 levels will continue to rise, and that by the year 2050 these levels will be approximately 550 ppm. CO2 is the raw material for photosynthesis and is known to affect plant growth and development. 2. The amount of nitrogen moving through terrestrial ecosystems has increased in the recent past. While natural "background" levels of nitrogen fixation have remained constant, human additions to the system through fertilizer production and fossil fuel use have increased dramatically. Nitrogen is a key nutrient for plant growth and plays a critical role in plant community structure and composition in many environments. 3. Biodiversity levels are falling. While the research and data are not as complete as they are for CO2 and nitrogen, data indicate that the number of species globally, is being reduced. Perhaps more important for ecosystem function, diversity levels on local to regional scales have fallen due to land use change, biotic invasion and many other drivers. While much is known about how each of these factors affects ecosystem functioning, many questions remain. There is also little data on how these issues affect each other, and what emergent qualities may arise when systems are exposed to these changes simultaneously. BioCON seeks to address these issues with this multi-year study at Cedar Creek Ecosytem Science Preserve.
DOI: 10.5281/zenodo.5817894
title: Cinetodus froggatti RB0449 ARBOR SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5817893
title: Cinetodus froggatti RB0449 ARBOR SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5817929
title: Study questionnaire and material for evaluation of usefulness of digital ecosystem representation

description: Contains study material (original German, translated to English) and study questionnaire (original in German, translated to English).
DOI: 10.5281/zenodo.5558667
title: Study questionnaire and material for evaluation of usefulness of digital ecosystem representation

description: Contains study material (original German, translated to English) and study questionnaire (original in German, translated to English).
DOI: 10.25345/c59c50
title: MassIVE MSV000088635 - HDX-MS data on bRaf, bRaf/Cdc37 and bRaf/Cdc37/Hsp90 protein complexes
title: HDX-MS data on bRaf, bRaf/Cdc37 and bRaf/Cdc37/Hsp90 protein complexes
DOI: 10.6084/m9.figshare.16622284
title: Supplementary data: Phylogenomic analysis, reclassification, and evolution of South American nemesioid burrowing mygalomorph spiders.

description: *Total data set comprised 456 loci (of 85374 nucleotides) for 101 terminals*Partition File*RaxML tree* Exabayes tree* IQ tree* Astral tree* TableS1