cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11512041
title: Untitled Item

description: XU "influence of screw conveyor blade shape on flow of viscous particles" paper data.
DOI: 10.6084/m9.figshare.11512041.v1
title: Untitled Item

description: XU "influence of screw conveyor blade shape on flow of viscous particles" paper data.
DOI: 10.6084/m9.figshare.11512017
title: Supplemental Data.zip

description: The data of paper "Influence of screw conveyor blade shape on flow of viscous particle" .
DOI: 10.6084/m9.figshare.11511219
title: Analyses.R

description: Chi-square test and logistic regression model in the study.
DOI: 10.6084/m9.figshare.11511219.v1
title: Analyses R.R

description: Chi-square test and logistic regression model in the study.
DOI: 10.6084/m9.figshare.11510499
title: Observational and simulated data for "Influence of Multiscale Orography on the Initiation and Maintenance of A Precipitating Convective System in North China: A Case Study"

description: Observational (radar and precipitation) and simulated (WRF) data for "Influence of Multiscale Orography on the Initiation and Maintenance of A Precipitating Convective System in North China: A Case Study"
DOI: 10.6084/m9.figshare.11510439
title: Growth of Bacillus subtilis NRS-762 (ATCC 8473) in different growth medium under different temperatures

description: <i>Bacillus subtilis</i> is an environmental microorganism endowed with an array of cell differentiation pathways such as competence, biofilm formation, cannibalism and sporulation. Also a commensal in the human gastrointestinal tract, <i>B. subtilis</i> is a bacterium of continuing research interest. This dataset reports data from experiments designed to explore the effect of different growth temperatures and growth media on the growth of <i>B. subtilis</i> NRS-762 (ATCC 8473) in shake flasks. Growth temperatures used were 25, 30, and 37 <sup>o</sup>C, and growth media investigated were LB Lennox, Tryptic Soy Broth, and M9 medium supplemented with yeast extract. Key finding from the experiments pertain to the existence of drastic decline in optical density of <i>B. subtilis</i> NRS-762 upon entry into stationary phase in LB Lennox and Tryptic Soy Broth irrespective of growth temperatures. Such drastic decline in optical density might be due to differentiation of <i>B. subtilis</i> into cannibalistic mode in stationary phase that, in turn, induced cell lysis. This finding meant that <i>B. subtilis</i> NRS-762 is not suitable as model organism in microbial survivability studies given the inability to disentangle coupled cell death arising from environmental stressor and intrinsic cell death. Overall, the dataset should find use in understanding the fundamental growth behaviour of <i>B. subtilis</i> NRS-762 in a variety of growth media under different temperatures.<br><br>
DOI: 10.6084/m9.figshare.11510499.v1
title: Observational and simulated data for "Influence of Multiscale Orography on the Initiation and Maintenance of A Precipitating Convective System in North China: A Case Study"

description: Observational (radar and precipitation) and simulated (WRF) data for "Influence of Multiscale Orography on the Initiation and Maintenance of A Precipitating Convective System in North China: A Case Study"
DOI: 10.6084/m9.figshare.11510241.v1
title: Fluid migration and widespread remagnetization in the Dabashan fold and thrust belts, China

description: To better understand the processes of fluid migration in orogenic zones and associated chemical remagnetization, we have conducte detailed magnetic, petrographic, and Strontium (Sr) isotope studies in an important orogenic belt of China, the Jurassic Dabashan fold and thrust belts. The result of this study has been submited to the Journal of Geophysical Research-Solid Earth. These materials contain two data tables for the 87Sr/86Sr (Table S1) and clay data (Table S2), which are two important data for the Figure 8 and Figure S1. <br>
DOI: 10.6084/m9.figshare.11510127
title: MNI to MIPLAB deformation (symmetric)

description: Composite deformations to map the symmetric MNI space to the MIPLAB atlas
DOI: 10.6084/m9.figshare.11510127.v1
title: MNI to MIPLAB deformation (symmetric)

description: Composite deformations to map the symmetric MNI space to the MIPLAB atlas
DOI: 10.6084/m9.figshare.11510124
title: MIPLAB to MNI deformation (asymmetric)

description: Composite deformations to map the asymmetric MIPLAB space to the MNI atlas
DOI: 10.6084/m9.figshare.11510121
title: MNI to MIPLAB deformation (asymmetric)

description: Composite deformations to map the asymmetric MNI space to the MIPLAB atlas
DOI: 10.6084/m9.figshare.11510124.v1
title: MIPLAB to MNI deformation (asymmetric)

description: Composite deformations to map the asymmetric MIPLAB space to the MNI atlas
DOI: 10.6084/m9.figshare.11510118
title: MIPLAB to MNI deformation (symmetric)

description: Composite deformations to map the symmetric MIPLAB space to the MNI atlas<br>
DOI: 10.6084/m9.figshare.11510121.v1
title: MNI to MIPLAB deformation (asymmetric)

description: Composite deformations to map the asymmetric MNI space to the MIPLAB atlas
DOI: 10.6084/m9.figshare.11510118.v1
title: MIPLAB to MNI deformation (symmetric)

description: Composite deformations to map the symmetric MIPLAB space to the MNI atlas<br>
DOI: 10.6084/m9.figshare.11510112
title: Asymmetric NCCT atlas

description: Asymmetric NCCT atlas without skull
DOI: 10.6084/m9.figshare.11510115
title: Symmetric NCCT atlas

description: Symmetric NCCT atlas without skull
DOI: 10.6084/m9.figshare.11510109
title: Asymmetric FLAIR mask

description: Asymmetric FLAIR binary brain mask
DOI: 10.6084/m9.figshare.11510112.v1
title: Asymmetric NCCT atlas

description: Asymmetric NCCT atlas without skull
DOI: 10.6084/m9.figshare.11510115.v1
title: Symmetric NCCT atlas

description: Symmetric NCCT atlas without skull
DOI: 10.6084/m9.figshare.11510109.v1
title: Asymmetric FLAIR mask

description: Asymmetric FLAIR binary brain mask
DOI: 10.6084/m9.figshare.11510103
title: Asymmetric FLAIR atlas (brain and skull)

description: Asymmetric FLAIR atlas with brain and skull
DOI: 10.6084/m9.figshare.11510103.v1
title: Asymmetric FLAIR atlas (brain and skull)

description: Asymmetric FLAIR atlas with brain and skull
DOI: 10.6084/m9.figshare.11510106
title: Symmetric FLAIR mask

description: Symmetric FLAIR binary brain mask
DOI: 10.6084/m9.figshare.11510100
title: Symmetric FLAIR atlas (brain and skull)

description: Symmetric FLAIR atlas with brain and skull
DOI: 10.6084/m9.figshare.11510106.v1
title: Symmetric FLAIR mask

description: Symmetric FLAIR binary brain mask
DOI: 10.6084/m9.figshare.11510091
title: Symmetric FLAIR atlas (brain volume only)

description: Symmetric FLAIR atlas brain volume only
DOI: 10.6084/m9.figshare.11510094
title: Asymmetric FLAIR atlas (brain volume only)

description: Asymmetric FLAIR atlas brain volume only
DOI: 10.6084/m9.figshare.11510094.v1
title: Asymmetric FLAIR atlas (brain volume only)

description: Asymmetric FLAIR atlas brain volume only
DOI: 10.6084/m9.figshare.11510091.v1
title: Symmetric FLAIR atlas (brain volume only)

description: Symmetric FLAIR atlas brain volume only
DOI: 10.6084/m9.figshare.11508243
title: MOESM3 of High clonal diversity of ESBL-producing Klebsiella pneumoniae isolates from clinical samples in a non-outbreak situation. A cohort study

description: Additional file 3. Characteristics hospital-acquired isolates.
DOI: 10.6084/m9.figshare.11508243.v1
title: MOESM3 of High clonal diversity of ESBL-producing Klebsiella pneumoniae isolates from clinical samples in a non-outbreak situation. A cohort study

description: Additional file 3. Characteristics hospital-acquired isolates.
DOI: 10.6084/m9.figshare.11508240
title: MOESM2 of High clonal diversity of ESBL-producing Klebsiella pneumoniae isolates from clinical samples in a non-outbreak situation. A cohort study

description: Additional file 2. Characteristics healthcare-related isolates.
DOI: 10.6084/m9.figshare.11508237
title: MOESM1 of High clonal diversity of ESBL-producing Klebsiella pneumoniae isolates from clinical samples in a non-outbreak situation. A cohort study

description: Additional file 1. Characteristics community-acquired isolates.
DOI: 10.6084/m9.figshare.11508240.v1
title: MOESM2 of High clonal diversity of ESBL-producing Klebsiella pneumoniae isolates from clinical samples in a non-outbreak situation. A cohort study

description: Additional file 2. Characteristics healthcare-related isolates.
DOI: 10.6084/m9.figshare.11508237.v1
title: MOESM1 of High clonal diversity of ESBL-producing Klebsiella pneumoniae isolates from clinical samples in a non-outbreak situation. A cohort study

description: Additional file 1. Characteristics community-acquired isolates.
DOI: 10.6084/m9.figshare.11508165
title: MOESM3 of Species traits, patch turnover and successional dynamics: when does intermediate disturbance favour metapopulation occupancy?

description: Additional file 3. R Script with all the necessary code to run the simulations (Annex 6).
DOI: 10.6084/m9.figshare.11508165.v1
title: MOESM3 of Species traits, patch turnover and successional dynamics: when does intermediate disturbance favour metapopulation occupancy?

description: Additional file 3. R Script with all the necessary code to run the simulations (Annex 6).
DOI: 10.6084/m9.figshare.11508159
title: MOESM2 of Species traits, patch turnover and successional dynamics: when does intermediate disturbance favour metapopulation occupancy?

description: Additional file 2. Excel file with the simulations results (Annex 5).
DOI: 10.6084/m9.figshare.11508159.v1
title: MOESM2 of Species traits, patch turnover and successional dynamics: when does intermediate disturbance favour metapopulation occupancy?

description: Additional file 2. Excel file with the simulations results (Annex 5).
DOI: 10.6084/m9.figshare.11507982
title: MOESM1 of Two-hybrid screening of FAM13A protein partners in lung epithelial cells

description: Additional file 1. Two-hybrid sequence data.
DOI: 10.6084/m9.figshare.11507982.v1
title: MOESM1 of Two-hybrid screening of FAM13A protein partners in lung epithelial cells

description: Additional file 1. Two-hybrid sequence data.
DOI: 10.6084/m9.figshare.11507931
title: MOESM3 of Novel genomic resources for shelled pteropods: a draft genome and target capture probes for Limacina bulimoides, tested for cross-species relevance

description: Additional file 3: 82-mer probe sequences for L. bulimoides.
DOI: 10.6084/m9.figshare.11507931.v1
title: MOESM3 of Novel genomic resources for shelled pteropods: a draft genome and target capture probes for Limacina bulimoides, tested for cross-species relevance

description: Additional file 3: 82-mer probe sequences for L. bulimoides.
DOI: 10.6084/m9.figshare.11507928
title: MOESM2 of Novel genomic resources for shelled pteropods: a draft genome and target capture probes for Limacina bulimoides, tested for cross-species relevance

description: Additional file 2: Transcripts of L. bulimoides with homology to biomineralisation proteins.
DOI: 10.6084/m9.figshare.11507928.v1
title: MOESM2 of Novel genomic resources for shelled pteropods: a draft genome and target capture probes for Limacina bulimoides, tested for cross-species relevance

description: Additional file 2: Transcripts of L. bulimoides with homology to biomineralisation proteins.
DOI: 10.6084/m9.figshare.11507919
title: MOESM4 of Mycoplasma penetrans bacteremia in an immunocompromised patient detected by metagenomic sequencing: a case report

description: Additional file 4: Table S3. Metagenomic sequencing of the non-inoculated blood culture growth medium.
DOI: 10.6084/m9.figshare.11507919.v1
title: MOESM4 of Mycoplasma penetrans bacteremia in an immunocompromised patient detected by metagenomic sequencing: a case report

description: Additional file 4: Table S3. Metagenomic sequencing of the non-inoculated blood culture growth medium.
DOI: 10.6084/m9.figshare.11507916
title: MOESM3 of Mycoplasma penetrans bacteremia in an immunocompromised patient detected by metagenomic sequencing: a case report

description: Additional file 3: Table S2. Metagenomic sequencing of an inoculated blood culture without a growth signal in the BacT/ALERT system.
DOI: 10.6084/m9.figshare.11507916.v1
title: MOESM3 of Mycoplasma penetrans bacteremia in an immunocompromised patient detected by metagenomic sequencing: a case report

description: Additional file 3: Table S2. Metagenomic sequencing of an inoculated blood culture without a growth signal in the BacT/ALERT system.
DOI: 10.6084/m9.figshare.11507907
title: MOESM2 of Mycoplasma penetrans bacteremia in an immunocompromised patient detected by metagenomic sequencing: a case report

description: Additional file 2: Table S1. Metagenomic sequencing of the negative blood culture from the patient with a growth signal in the BacT/ALERT system.
DOI: 10.6084/m9.figshare.11507907.v1
title: MOESM2 of Mycoplasma penetrans bacteremia in an immunocompromised patient detected by metagenomic sequencing: a case report

description: Additional file 2: Table S1. Metagenomic sequencing of the negative blood culture from the patient with a growth signal in the BacT/ALERT system.
DOI: 10.6084/m9.figshare.11507871
title: MOESM6 of Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize

description: Additional file 6. STAR Aligner output showing summary of results across all tissue samples.
DOI: 10.6084/m9.figshare.11507871.v1
title: MOESM6 of Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize

description: Additional file 6. STAR Aligner output showing summary of results across all tissue samples.
DOI: 10.6084/m9.figshare.11507868
title: MOESM5 of Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize

description: Additional file 5. Expression data aligned to v4.
DOI: 10.6084/m9.figshare.11507868.v1
title: MOESM5 of Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize

description: Additional file 5. Expression data aligned to v4.
DOI: 10.6084/m9.figshare.11507850
title: MOESM3 of Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize

description: Additional file 3. GO term assignment data.
DOI: 10.6084/m9.figshare.11507850.v1
title: MOESM3 of Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize

description: Additional file 3. GO term assignment data.
DOI: 10.6084/m9.figshare.11507838
title: MOESM1 of Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize

description: Additional file 1. Subgenome assignments in v4 for all genes, list of retained duplicate pairs, list of reactions associated with subgenome genes for all reactions and for the subset of reactions associated with at least one CornCyc pathway.
DOI: 10.6084/m9.figshare.11507838.v1
title: MOESM1 of Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize

description: Additional file 1. Subgenome assignments in v4 for all genes, list of retained duplicate pairs, list of reactions associated with subgenome genes for all reactions and for the subset of reactions associated with at least one CornCyc pathway.
DOI: 10.6084/m9.figshare.11507841
title: MOESM2 of Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize

description: Additional file 2. Subgenome dominance in terms of expression and protein abundance for retained duplicate pairs.
DOI: 10.6084/m9.figshare.11507841.v1
title: MOESM2 of Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize

description: Additional file 2. Subgenome dominance in terms of expression and protein abundance for retained duplicate pairs.
DOI: 10.6084/m9.figshare.11507778
title: MOESM1 of Role of offset and gradient architectures of 3-D melt electrowritten scaffold on differentiation and mineralization of osteoblasts

description: Additional file 1. Osteoblast Proliferation. Proliferation of osteoblasts in osteogenic (+) and basal medium (−) seeded on PCL scaffolds with different porosity for 1, 3, 14, and 30 days. * significant versus other scaffolds. Δ nonsignificant versus 250 μm -. # and $ nonsignificant versus Gradient - (p
DOI: 10.6084/m9.figshare.11507778.v1
title: MOESM1 of Role of offset and gradient architectures of 3-D melt electrowritten scaffold on differentiation and mineralization of osteoblasts

description: Additional file 1. Osteoblast Proliferation. Proliferation of osteoblasts in osteogenic (+) and basal medium (−) seeded on PCL scaffolds with different porosity for 1, 3, 14, and 30 days. * significant versus other scaffolds. Δ nonsignificant versus 250 μm -. # and $ nonsignificant versus Gradient - (p
DOI: 10.6084/m9.figshare.11507724
title: MOESM1 of Copy number variation of CCL3L1 among three major ethnic groups in Malaysia

description: Additional file 1. Agreement between PRT and microsatellites. Samples with discordancy of copy number were excluded from further statistical analysis.
DOI: 10.6084/m9.figshare.11507724.v1
title: MOESM1 of Copy number variation of CCL3L1 among three major ethnic groups in Malaysia

description: Additional file 1. Agreement between PRT and microsatellites. Samples with discordancy of copy number were excluded from further statistical analysis.
DOI: 10.6084/m9.figshare.11507676
title: MOESM2 of An Axiom SNP genotyping array for Douglas-fir

description: Additional file 2: Data S1. Characteristics of Douglas-fir SNPs successfully genotyped using an Axiom genotyping array.
DOI: 10.6084/m9.figshare.11506785
title: Macular maldevelopment in <i>ATF6</i>-mediated retinal dysfunction

description: <b>Background</b>: Achromatopsia has been previously associated with mutations in the <i>ATF6</i> gene. Rod-monochromatism, foveal hypoplasia, and disruption of the subfoveal photoreceptor layer are described as phenotypical features. We report detailed structural and electrophysiological assessment of two patients from two families, one manifesting severe macular maldevelopment and one with foveal hypoplasia. <b>Materials and methods</b>: The patients underwent a complete ophthalmic examination including electroretinography (ERG), spectral-domain optical coherence tomography (SD-OCT), fundus autofluorescence, and fundus photography. Genetic testing was performed by next-generation sequencing. <b>Results</b>: In one patient, fundoscopy and SD-OCT revealed well-demarcated coloboma-like excavated lesions at the central macula of both eyes. Genetic analysis identified a novel homozygous p.Asp140Ter mutation in the <i>ATF6</i> gene. The second patient had foveal hypoplasia in association with a homozygous <i>ATF6</i> mutation affecting a splice donor site (c.1187 + 5G&gt;C). In both patients, electrophysiological assessment showed normal rod-specific (DA 0.01) and dark-adapted bright white-flash ERGs (DA 10.0). 30 Hz flicker ERGs were undetectable. There were low-amplitude single-flash photopic ERGs (LA 3.0) with timing and shape suggesting S-cone origin. <b>Conclusions</b>: The findings, particularly a case with severe macular maldevelopment, may expand on the phenotype previously associated with <i>ATF6</i>-mediated achromatopsia. In addition, the comprehensive electrophysiological assessment suggests that preserved S-cone activity can be detected in this particular molecular sub-type of cone dysfunction.
DOI: 10.6084/m9.figshare.11506785.v1
title: Macular maldevelopment in <i>ATF6</i>-mediated retinal dysfunction

description: <b>Background</b>: Achromatopsia has been previously associated with mutations in the <i>ATF6</i> gene. Rod-monochromatism, foveal hypoplasia, and disruption of the subfoveal photoreceptor layer are described as phenotypical features. We report detailed structural and electrophysiological assessment of two patients from two families, one manifesting severe macular maldevelopment and one with foveal hypoplasia. <b>Materials and methods</b>: The patients underwent a complete ophthalmic examination including electroretinography (ERG), spectral-domain optical coherence tomography (SD-OCT), fundus autofluorescence, and fundus photography. Genetic testing was performed by next-generation sequencing. <b>Results</b>: In one patient, fundoscopy and SD-OCT revealed well-demarcated coloboma-like excavated lesions at the central macula of both eyes. Genetic analysis identified a novel homozygous p.Asp140Ter mutation in the <i>ATF6</i> gene. The second patient had foveal hypoplasia in association with a homozygous <i>ATF6</i> mutation affecting a splice donor site (c.1187 + 5G&gt;C). In both patients, electrophysiological assessment showed normal rod-specific (DA 0.01) and dark-adapted bright white-flash ERGs (DA 10.0). 30 Hz flicker ERGs were undetectable. There were low-amplitude single-flash photopic ERGs (LA 3.0) with timing and shape suggesting S-cone origin. <b>Conclusions</b>: The findings, particularly a case with severe macular maldevelopment, may expand on the phenotype previously associated with <i>ATF6</i>-mediated achromatopsia. In addition, the comprehensive electrophysiological assessment suggests that preserved S-cone activity can be detected in this particular molecular sub-type of cone dysfunction.
DOI: 10.6084/m9.figshare.11506380
title: Datasets: Carbon Flux Variability from a Relatively Simple Ecosystem Model with Assimilated Data is Consistent with Terrestrial Biosphere Model Estimates

description: The data are CARDAMOM outputs of Net Biosphere Exchange and Gross Primary Productivity, along with correlations between these outputs and models from the CMIP5 and TRENDY Terrestrial Biosphere Model archives. Data are published in conjunction with a journal article - Carbon Flux Variability from a Relatively Simple Ecosystem Model with Assimilated Data is Consistent with Terrestrial Biosphere Model Estimates
DOI: 10.6084/m9.figshare.11506353
title: Individualized Multidirectional Variable Selection

description: In this article, we propose a heterogeneous modeling framework which achieves individual-wise feature selection and heterogeneous covariates’ effects subgrouping simultaneously. In contrast to conventional model selection approaches, the new approach constructs a separation penalty with multidirectional shrinkages, which facilitates individualized modeling to distinguish strong signals from noisy ones and selects different relevant variables for different individuals. Meanwhile, the proposed model identifies subgroups among which individuals share similar covariates’ effects, and thus improves individualized estimation efficiency and feature selection accuracy. Moreover, the proposed model also incorporates within-individual correlation for longitudinal data to gain extra efficiency. We provide a general theoretical foundation under a double-divergence modeling framework where the number of individuals and the number of individual-wise measurements can both diverge, which enables inference on both an individual level and a population level. In particular, we establish a strong oracle property for the individualized estimator to ensure its optimal large sample property under various conditions. An efficient ADMM algorithm is developed for computational scalability. Simulation studies and applications to post-trauma mental disorder analysis with genetic variation and an HIV longitudinal treatment study are illustrated to compare the new approach to existing methods. Supplementary materials for this article are available online.