cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17028/rd.lboro.7845062.v1
title: Supplementary information files for article: 'Life-cycle assessment of microwave-assisted pectin extraction at pilot scale'

description: Supplementary information files for article: 'Life-cycle assessment of microwave-assisted pectin extraction at pilot scale'.<br>Abstract: The first Life-Cycle Assessment (LCA) of an acid-free, microwave-assisted process for pectin production at pilot scale is reported. The properties of the resulting pectin were measured and compared against the criteria for commercial pectin, while the energy consumption of the microwave process was measured to compare its life cycle impacts with that of the current commercial process. Overall, the pectin met all the criteria for food-grade commercial pectin. The microwave unit was estimated to have &lt;25% of the environmental impact of traditional acid-assisted thermal process in all categories measured and provided an improved yield of 5% (wet weight basis) compared to 3% by thermal heating under normalized conditions. The readouts were comparable with each other over three runs indicating a robust and reproducible process, crucial for scale-up purposes. With the product meeting the relevant criteria and the process being robust and more environmentally friendly, this work demonstrates the practical and commercial potential of microwave technology to succeed conventional acid-based extraction of pectin production.
DOI: 10.6084/m9.figshare.7844999
title: Data for EVALUATION OF THE RETENTION OF SKILLS IN ADVANCED CARDIOVASCULAR LIFE SUPPORT (ACLS), FOLLOWING A THEORETICAL-PRACTICAL INTERVENTION IN POSTGRADUATE PHYSICIAN STUDENTS OF CRITICAL AREAS

description: Characteristics of the participants, Performance of participants, Results of the evaluation, Practical skills, ANCOVA written and ANCOVA practical
DOI: 10.6084/m9.figshare.7844972
title: Data for the 1818 Giétro flood

description: Here we provide additional data for our paper "Hydraulic reconstruction of the 1818 Giétro glacial lake outburst flood".<br>Update October 2019: The archive was supplemented with the last estimates provided by Christophe Lambiel (UNIL)<br>
DOI: 10.6084/m9.figshare.7844963
title: Raw data used to generate tables S1-S3 of the supplementary material of Enzyme Annotation for orphan and novel reactions using knowledge of substrate reactive sites

description: The raw data used to generate tables S1-S3 of the suppementary material of Enzyme Annotation for orphan and novel reactions using knowledge of substrate reactive sites<br>
DOI: 10.6084/m9.figshare.7844972.v2
title: Data for the 1818 Giétro flood

description: Here we provide additional data for our paper "Hydraulic reconstruction of the 1818 Giétro glacial lake outburst flood"<br>
DOI: 10.6084/m9.figshare.7844972.v3
title: Data for the 1818 Giétro flood

description: Here we provide additional data for our paper "Hydraulic reconstruction of the 1818 Giétro glacial lake outburst flood"<br>
DOI: 10.6084/m9.figshare.7844972.v4
title: Data for the 1818 Giétro flood

description: Here we provide additional data for our paper "Hydraulic reconstruction of the 1818 Giétro glacial lake outburst flood"<br>
DOI: 10.6084/m9.figshare.7844822
title: SupplementaryDataset_MetastaticNetwork_Castilloetal

description: Data set used in the analyses of the metastatic network under a metapopulation view.<br><b>data01_dataIncidence.csv</b>Data with the metastatic incidence, i.e. number of cases for each pair source-acceptor over the total number of cases.<br><b>data02_summarydata.csv</b>This dataset contains data used for correlations. Origin of the estimated values are included in supplementary methods, values corresponding to network connectivity and metastatic incidence are from this study.<b><br></b><b>data03_con_art.csv</b><br>This dataset corresponds to a incidence matrix for organs sharing supply vessels.<br><b>data04_con_vei.csv</b><br>This dataset corresponds to a incidence matrix for organs sharing drainage vessels.<br>
DOI: 10.6084/m9.figshare.7844972.v5
title: Data for the 1818 Giétro flood

description: Here we provide additional data for our paper "Hydraulic reconstruction of the 1818 Giétro glacial lake outburst flood"<br>
DOI: 10.6084/m9.figshare.7844972.v6
title: Data for the 1818 Giétro flood

description: Here we provide additional data for our paper "Hydraulic reconstruction of the 1818 Giétro glacial lake outburst flood"<br>
DOI: 10.6084/m9.figshare.7844972.v8
title: Data for the 1818 Giétro flood

description: Here we provide additional data for our paper "Hydraulic reconstruction of the 1818 Giétro glacial lake outburst flood".<br>Update October 2019: The archive was supplemented with the last estimates provided by Christophe Lambiel (UNIL)<br>
DOI: 10.6084/m9.figshare.7844972.v7
title: Data for the 1818 Giétro flood

description: Here we provide additional data for our paper "Hydraulic reconstruction of the 1818 Giétro glacial lake outburst flood"<br>
DOI: 10.6084/m9.figshare.7844594
title: Heatmap of the overall HTS database

description: High througput imaging DB of toxicological effect of Manufactured nanomaterials on HepaRGs. (Note that: JRC NM-111 was included in Batch 1 but due to an error this item was only tested from experiment 6. To get three replicates for Mitochondrial membrane potential and cell viability this item was included also in experiments 10 and 11. In addition some of the tested materials in Batch 3 arrived late and were therefore not tested in triplicate. )
DOI: 10.6084/m9.figshare.7844495
title: Kaplan&Friston2019PLoSBiologyNeuralData.zip

description: Neural data presented in figures 3,4,s3-5 in Kaplan & Friston (2019) PLoS Biology
DOI: 10.6084/m9.figshare.7844594.v2
title: Heatmap of the overall HTS database

description: High througput imaging DB of toxicological effect of Manufactured nanomaterials on HepaRGs. (Note that: JRC NM-111 was included in Batch 1 but due to an error this item was only tested from experiment 6. To get three replicates for Mitochondrial membrane potential and cell viability this item was included also in experiments 10 and 11. In addition some of the tested materials in Batch 3 arrived late and were therefore not tested in triplicate. )
DOI: 10.6084/m9.figshare.7844495.v1
title: Kaplan&Friston2019PLoSBiologyNeuralData.zip

description: Neural data presented in figures 3,4,s3-5 in Kaplan & Friston (2019) PLoS Biology
DOI: 10.6084/m9.figshare.7844594.v1
title: Heatmap of the overall HTS database

description: High througput imaging DB of toxicological effect of Manufactured nanomaterials on HepaRGs. (Note that: JRC NM-111 was included in Batch 1 but due to an error this item was only tested from experiment 6. To get three replicates for Mitochondrial membrane potential and cell viability this item was included also in experiments 10 and 11. In addition some of the tested materials in Batch 3 arrived late and were therefore not tested in triplicate. )
DOI: 10.6084/m9.figshare.7844426
title: Screening and identification of SipC-interacting proteins in Salmonella enteritidis using Gal4 yeast two-hybrid system in duck

description: Systematic yeast two-hybrid library screens were performed with SipC from a duck granulosa cells (dGCs) as bait. Twelve co-regulatory proteins were identified. The p53-effector related to PMP-22 (PERP) was the most frequent and fastest positive clone identified and the key factor PERP interacts with SipC to promote SE invasion of dGC ovaries, providing critical insights about the complexity of host-bacteria protein interactions during <i>Salmonella</i> invasion.<br>
DOI: 10.6084/m9.figshare.7844426.v1
title: Screening and identification of SipC-interacting proteins in Salmonella enteritidis using Gal4 yeast two-hybrid system in duck

description: Systematic yeast two-hybrid library screens were performed with SipC from a duck granulosa cells (dGCs) as bait. Twelve co-regulatory proteins were identified. The p53-effector related to PMP-22 (PERP) was the most frequent and fastest positive clone identified and the key factor PERP interacts with SipC to promote SE invasion of dGC ovaries, providing critical insights about the complexity of host-bacteria protein interactions during <i>Salmonella</i> invasion.<br>
DOI: 10.26180/5c8a5089237e6
title: Ring Artefact Correction Data

description: Tomographic data for a rabbit kitten brain <i>in situ</i>.
DOI: 10.6084/m9.figshare.7844354
title: Supplementary Material for: Thalamic Reticular Nucleus in <b><i>Caiman crocodilus</i></b>: Immunohistochemical Staining

description: The thalamic reticular nucleus in reptiles, <i>Caiman crocodilus</i>, shares a number of morphological similarities with its counterpart in mammals. In view of the immunohistochemical properties of this nucleus in mammals and the more recently identified complexity of this neuronal aggregate in <i>Caiman</i>, this nucleus was investigated using a number of antibodies. These results were compared with findings described for other amniotes. The following antibodies gave consistent and reproducible results: polyclonal sheep anti-parvalbumin (PV), monoclonal mouse anti-PV, and polyclonal sheep anti-glutamic acid decarboxylase (GAD). In the transverse plane, this nucleus is divided into two. In each part, a compact group of cells sits on top of the fibers of the forebrain bundle with scattered cells among these fibers. In the lateral forebrain bundle, this neuronal aggregate is represented by the dorsal peduncular nucleus and the perireticular nucleus while, in the medial forebrain bundle, these parts are the interstitial nucleus and the scattered cells in this fiber tract. The results of this study are the following. First, the thalamic reticular nucleus of <i>Caiman</i> contains GAD(+) and PV(+) neurons, which is similar to what has been described in other amniotes. Second, the morphology and distribution of many GAD(+) and PV(+) neurons in the dorsal peduncular and perireticular nuclei are similar and suggest that these neurons colocalize these markers. Third, neurons in the interstitial nucleus and in the medial forebrain bundle are GAD(+) and PV(+). At the caudal pole of the thalamic reticular nucleus, PV immunoreactive cells predominated and avoided the central portion of this nucleus where GAD(+) cells were preferentially located. However, GAD(+) cells were sparse when compared with PV(+) cells. This immunohistochemically different area in the caudal pole is considered to be an area separate from the thalamic reticular nucleus.
DOI: 10.6084/m9.figshare.7844354.v1
title: Supplementary Material for: Thalamic Reticular Nucleus in <b><i>Caiman crocodilus</i></b>: Immunohistochemical Staining

description: The thalamic reticular nucleus in reptiles, <i>Caiman crocodilus</i>, shares a number of morphological similarities with its counterpart in mammals. In view of the immunohistochemical properties of this nucleus in mammals and the more recently identified complexity of this neuronal aggregate in <i>Caiman</i>, this nucleus was investigated using a number of antibodies. These results were compared with findings described for other amniotes. The following antibodies gave consistent and reproducible results: polyclonal sheep anti-parvalbumin (PV), monoclonal mouse anti-PV, and polyclonal sheep anti-glutamic acid decarboxylase (GAD). In the transverse plane, this nucleus is divided into two. In each part, a compact group of cells sits on top of the fibers of the forebrain bundle with scattered cells among these fibers. In the lateral forebrain bundle, this neuronal aggregate is represented by the dorsal peduncular nucleus and the perireticular nucleus while, in the medial forebrain bundle, these parts are the interstitial nucleus and the scattered cells in this fiber tract. The results of this study are the following. First, the thalamic reticular nucleus of <i>Caiman</i> contains GAD(+) and PV(+) neurons, which is similar to what has been described in other amniotes. Second, the morphology and distribution of many GAD(+) and PV(+) neurons in the dorsal peduncular and perireticular nuclei are similar and suggest that these neurons colocalize these markers. Third, neurons in the interstitial nucleus and in the medial forebrain bundle are GAD(+) and PV(+). At the caudal pole of the thalamic reticular nucleus, PV immunoreactive cells predominated and avoided the central portion of this nucleus where GAD(+) cells were preferentially located. However, GAD(+) cells were sparse when compared with PV(+) cells. This immunohistochemically different area in the caudal pole is considered to be an area separate from the thalamic reticular nucleus.
DOI: 10.6084/m9.figshare.7844309
title: Table S1 from Narrow habitat breadth and late-summer emergence increases extinction vulnerability in Central European bees

description: The 17 traits and their states for all species coded
DOI: 10.6084/m9.figshare.7844306
title: Table S2 from Narrow habitat breadth and late-summer emergence increases extinction vulnerability in Central European bees

description: Flight times for all bee species coded in this study
DOI: 10.6084/m9.figshare.7844306.v1
title: Table S2 from Narrow habitat breadth and late-summer emergence increases extinction vulnerability in Central European bees

description: Flight times for all bee species coded in this study
DOI: 10.6084/m9.figshare.7844309.v1
title: Table S1 from Narrow habitat breadth and late-summer emergence increases extinction vulnerability in Central European bees

description: The 17 traits and their states for all species coded
DOI: 10.6084/m9.figshare.7844201
title: HCP-MMP 1.0 projected on 7T MRI data (59k mesh)

description: Hello everyone,<br>In order to resample the HCP-MMP1.0 parcellation, following steps were done and the new mesh is attached here.<br>1. download needed materials followed by suggestion below:https://www.mail-archive.com/hcp-users@humanconnectome.org/msg06289.html<br>They are:1.1 original mesh( Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii) from BALSA: https://balsa.wustl.edu/WN56<br>1.2 download group standard 32K and 59K spheres for both hemispheres (Q1-Q6_RelatedParcellation210.L.sphere.32k_fs_LR.surf.gii; Q1-Q6_RelatedParcellation210.R.sphere.32k_fs_LR.surf.gii, L.sphere.59k_fs_LR.surf.gii & R.sphere.59k_fs_LR.surf.gii) from HCP Github: https://github.com/Washington-University/HCPpipelines/tree/master/global/templates/standard_mesh_atlases <br><br>2. using workbench, separate, resample and merge parcellation files:<br><br>wb_command -cifti-separate Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii COLUMN -label CORTEX_LEFT Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.giiwb_command -cifti-separate Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii COLUMN -label CORTEX_RIGHT Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.giiwb_command -label-resample Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.gii Q1-Q6_RelatedParcellation210.L.sphere.32k_fs_LR.surf.gii L.sphere.59k_fs_LR.surf.gii BARYCENTRIC Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.niiwb_command -label-resample Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.gii Q1-Q6_RelatedParcellation210.R.sphere.32k_fs_LR.surf.gii R.sphere.59k_fs_LR.surf.gii BARYCENTRIC Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.niiwb_command -cifti-create-label Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.59k_fs_LR.dlabel.nii -left-label Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.nii -right-label Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.nii<br>NOTE: when doing merge, there's error for label-merge function for dlabel.nii file, therefore I changed the code to -cifti-create-label followed the suggestion from:https://www.mail-archive.com/hcp-users@humanconnectome.org/msg03217.html<br><br>3.Pick up the new mesh: Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.59k_fs_LR.dlabel.nii<br>4. Enjoy :)<br>AcknowledgementThanks for the help of my supervisor Michelle Moerel during this transformation. Wish her all the best~
DOI: 10.6084/m9.figshare.7844180
title: Supplementary Material for: Locomotor Kinematics of Two Semi-Wild Macaque Species (<b><i>Macaca assamensis</i></b> and <b><i>Macaca arctoides</i></b>) in Thailand

description: This project aimed to investigate primate locomotor kinematics noninvasively in the wild. Semi-wild Assamese and stump-tailed macaques were selected for the study, which was performed in Thailand. We investigated their locomotor kinematics and its relationship to habitat use. The macaques’ positional behavior was recorded with two video cameras, and kinematic parameters were estimated during terrestrial quadrupedal locomotion, using the markerless method. The data analyzed so far revealed that stump-tailed macaques walk with longer, less frequent strides than Assamese macaques. Although stump-tailed macaques present a smaller angular excursion of the shoulder joint than Assamese macaques, they exhibited a relatively large shoulder girdle motion and anteroposterior translation of the shoulder, which increased their stride length. Additionally, stump-tailed macaques exhibited a digitigrade gait and elbow extension, suggesting a good adaptation to terrestrial locomotion. Assamese macaques, on the other hand, exhibited a gait that did not seem optimized for terrestrial locomotion, using the hands in a palmigrade posture and frequently flexing the fingers at varying degrees. The kinematic characteristics of the two species studied is consistent with previous field observations reporting that Assamese macaques are highly arboreal, whereas stump-tailed macaques are more terrestrial.
DOI: 10.6084/m9.figshare.7844201.v1
title: Untitled Item

description: Hello everyone,<br>In order to resample the HCP-MMP1.0 parcellation, following steps were done and the new mesh is attached here.<br>1. download needed materials followed by suggestion below:https://www.mail-archive.com/hcp-users@humanconnectome.org/msg06289.html<br>They are:1.1 original mesh( Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii) from BALSA: https://balsa.wustl.edu/WN56<br>1.2 download group standard 32K and 59K spheres for both hemispheres (Q1-Q6_RelatedParcellation210.L.sphere.32k_fs_LR.surf.gii; Q1-Q6_RelatedParcellation210.R.sphere.32k_fs_LR.surf.gii, L.sphere.59k_fs_LR.surf.gii & R.sphere.59k_fs_LR.surf.gii) from HCP Github: https://github.com/Washington-University/HCPpipelines/tree/master/global/templates/standard_mesh_atlases <br><br>2. using workbench, separate, resample and merge parcellation files:<br><br>wb_command -cifti-separate Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii COLUMN -label CORTEX_LEFT Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.giiwb_command -cifti-separate Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii COLUMN -label CORTEX_RIGHT Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.giiwb_command -label-resample Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.gii Q1-Q6_RelatedParcellation210.L.sphere.32k_fs_LR.surf.gii L.sphere.59k_fs_LR.surf.gii BARYCENTRIC Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.niiwb_command -label-resample Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.gii Q1-Q6_RelatedParcellation210.R.sphere.32k_fs_LR.surf.gii R.sphere.59k_fs_LR.surf.gii BARYCENTRIC Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.niiwb_command -cifti-create-label Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.59k_fs_LR.dlabel.nii -left-label Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.nii -right-label Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.nii<br>NOTE: when doing merge, there's error for label-merge function for dlabel.nii file, therefore I changed the code to -cifti-create-label followed the suggestion from:https://www.mail-archive.com/hcp-users@humanconnectome.org/msg03217.html<br><br>3.Pick up the new mesh: Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.59k_fs_LR.dlabel.nii<br>4. Enjoy :)
DOI: 10.6084/m9.figshare.7844147
title: Whole Genome assembly

description: Fasta file of the whole genome assembly of Vitis riparia Gloire de Montpellier organized in 19 pseudomolecules and 1 Chr00 containing unassigned scaffolds
DOI: 10.6084/m9.figshare.7844180.v1
title: Supplementary Material for: Locomotor Kinematics of Two Semi-Wild Macaque Species (<b><i>Macaca assamensis</i></b> and <b><i>Macaca arctoides</i></b>) in Thailand

description: This project aimed to investigate primate locomotor kinematics noninvasively in the wild. Semi-wild Assamese and stump-tailed macaques were selected for the study, which was performed in Thailand. We investigated their locomotor kinematics and its relationship to habitat use. The macaques’ positional behavior was recorded with two video cameras, and kinematic parameters were estimated during terrestrial quadrupedal locomotion, using the markerless method. The data analyzed so far revealed that stump-tailed macaques walk with longer, less frequent strides than Assamese macaques. Although stump-tailed macaques present a smaller angular excursion of the shoulder joint than Assamese macaques, they exhibited a relatively large shoulder girdle motion and anteroposterior translation of the shoulder, which increased their stride length. Additionally, stump-tailed macaques exhibited a digitigrade gait and elbow extension, suggesting a good adaptation to terrestrial locomotion. Assamese macaques, on the other hand, exhibited a gait that did not seem optimized for terrestrial locomotion, using the hands in a palmigrade posture and frequently flexing the fingers at varying degrees. The kinematic characteristics of the two species studied is consistent with previous field observations reporting that Assamese macaques are highly arboreal, whereas stump-tailed macaques are more terrestrial.
DOI: 10.6084/m9.figshare.7844120
title: CSxRGM Genetic Map

description: Genetic maps from the interspecific cross between Vitis vinifera Cabernet Sauvignon and Vitis riparia Gloire de Montpellier. Linkage groups are listed from LG1 to LG19 with markers order and genetic distances in Haldane cM.
DOI: 10.6084/m9.figshare.7844147.v1
title: Whole Genome assembly

description: Fasta file of the whole genome assembly of Vitis riparia Gloire de Montpellier organized in 19 pseudomolecules and 1 Chr00 containing unassigned scaffolds
DOI: 10.6084/m9.figshare.7844120.v1
title: CSxRGM Genetic Map

description: Genetic maps from the interspecific cross between Vitis vinifera Cabernet Sauvignon and Vitis riparia Gloire de Montpellier. Linkage groups are listed from LG1 to LG19 with markers order and genetic distances in Haldane cM.
DOI: 10.6084/m9.figshare.7844093
title: Additional file 6: of A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

description: A. Coordinates (R6), length, recombination rates and PCR results of the 26 promoter regions with a roo insertion in the reference genome. B. PCR results and de novo TE information of the 28 promoter regions where &gt; = 3 strains putatively have a roo insertion based on TIDAL software predictions. C. Promoter regions where