cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30495452.v1
title: Multi-scale Interaction Mechanism for Edge-Localized-Mode Suppression in the Tokamak Edge

description: This repository provides the data and plotting scripts supporting the findings of the Nature Communications paper, "Multi-scale Interaction Mechanism for Edge-Localized-Mode Suppression in the Tokamak Edge." The files allow for the reproduction of the figures presented in the study. The dataset includes processed experimental data from the DIII-D tokamak and simulation results. For detailed instructions, please see the README.txt file.
DOI: 10.6084/m9.figshare.28615220
title: Structural basis for human chondroitin sulfate chain polymerization

description: Structure of the CHSY3-CHPF chondroitin sulfate polymerase and corresponding cryo-EM maps, including the consensus map, focussed refinement maps for N- and C-terminal part as well as resulting composite map. Mass spectrometry raw data for glycopeptide analysis.
DOI: 10.6084/m9.figshare.28615220.v1
title: Structural basis for human chondroitin sulfate chain polymerization

description: Structure of the CHSY3-CHPF chondroitin sulfate polymerase and corresponding cryo-EM maps, including the consensus map, focussed refinement maps for N- and C-terminal part as well as resulting composite map. Mass spectrometry raw data for glycopeptide analysis.
DOI: 10.6084/m9.figshare.29505461
title: Near-field Probing of the Local Density of Optical States Enhanced by Bound States in the Continuum in Nonlocal Metasurfaces

description: THz near-field microscopy is employed to characterize the spatial distribution of BIC mode in nonlocal metasurface
DOI: 10.6084/m9.figshare.29505461.v1
title: Near-field Probing of the Local Density of Optical States Enhanced by Bound States in the Continuum in Nonlocal Metasurfaces

description: THz near-field microscopy is employed to characterize the spatial distribution of BIC mode in nonlocal metasurface
DOI: 10.6084/m9.figshare.28821737
title: A niche-dependent redox rheostat regulates epithelial stem cell fate

description: Primers for genotyping reporter mice
DOI: 10.6084/m9.figshare.28821737.v1
title: A niche-dependent redox rheostat regulates epithelial stem cell fate

description: Primers for genotyping reporter mice
DOI: 10.6084/m9.figshare.29421056
title: GII.17 norovirus re-emerged in the 2020s as a result of dynamic and adaptive evolutionary processes

description: The dataset contains (i) the number of GenBank records of GII.17 Norovirus, (ii) viral genome titers within acute gastroenteritis patients infected with GII.17 norovirus in Germany, (iii) ELISA OD values in characterization of HBGA carbohydrates types secreted in different human saliva samples, (iv) ELISA AUC titers in HBGA-GII.17 VLPs binding assays, (v) HBGA-blockade EC50 titers using animal hyperimmune sera, (vi) the number of outbreaks caused by Norovirus GII in the United States, (vii) human serum ELISA IgG titers and HBGA-blockade titers against different GII.17 noroviruses, and other raw data used for plotting the genomics/bioinformatics analyses.
DOI: 10.6084/m9.figshare.29421056.v1
title: GII.17 norovirus re-emerged in the 2020s as a result of dynamic and adaptive evolutionary processes

description: The dataset contains (i) the number of GenBank records of GII.17 Norovirus, (ii) viral genome titers within acute gastroenteritis patients infected with GII.17 norovirus in Germany, (iii) ELISA OD values in characterization of HBGA carbohydrates types secreted in different human saliva samples, (iv) ELISA AUC titers in HBGA-GII.17 VLPs binding assays, (v) HBGA-blockade EC50 titers using animal hyperimmune sera, (vi) the number of outbreaks caused by Norovirus GII in the United States, (vii) human serum ELISA IgG titers and HBGA-blockade titers against different GII.17 noroviruses, and other raw data used for plotting the genomics/bioinformatics analyses.
DOI: 10.6084/m9.figshare.28723652
title: Geometry-preserving vector field reconstruction of high-dimensional cell-state dynamics using ddHodge

description: This anndata file contains various dynamic indicators—including potential, divergence, curl, and others on manifold—calculated by ddHodge. The read count matrices for the mouse embryogenesis scRNA-seq data (VASA-seq; Salmén et al., 2022) were obtained from GEO (accession: GSE176588). The raw sequence data for the regenerating muscle tissue scRNA-seq (De Micheli et al., 2020) were obtained from NCBI (accession: SRP241205). RNA velocity was computed using scVelo (version 0.3.2). The code to reproduce our results is available at our GitHub repository: https://github.com/kazumits/ddHodge_figures.
DOI: 10.6084/m9.figshare.28723652.v1
title: Geometry-preserving vector field reconstruction of high-dimensional cell-state dynamics using ddHodge

description: This anndata file contains various dynamic indicators—including potential, divergence, curl, and others on manifold—calculated by ddHodge. The read count matrices for the mouse embryogenesis scRNA-seq data (VASA-seq; Salmén et al., 2022) were obtained from GEO (accession: GSE176588). The raw sequence data for the regenerating muscle tissue scRNA-seq (De Micheli et al., 2020) were obtained from NCBI (accession: SRP241205). RNA velocity was computed using scVelo (version 0.3.2). The code to reproduce our results is available at our GitHub repository: https://github.com/kazumits/ddHodge_figures.
DOI: 10.6084/m9.figshare.28911734
title: Large-scale analysis of bacterial genomes reveals thousands of lytic phages

description: BAPS lytic phage genome sequences in gzipped FASTA format.
DOI: 10.6084/m9.figshare.28911734.v1
title: Large-scale analysis of bacterial genomes reveals thousands of lytic phages

description: BAPS lytic phage genome sequences in gzipped FASTA format.
DOI: 10.6084/m9.figshare.30031585
title: Thermal responsive Rh1-Pd single-atom catalyst for controlling activity in direct formic acid fuel cells

description: This dataset contains the data supporting the figures presented in the manuscript “Thermal responsive Rh1-Pd single-atom catalyst for controlling activity in direct formic acid fuel cells”, enabling reproduction of the reported results.
DOI: 10.6084/m9.figshare.30031585.v1
title: Thermal responsive Rh1-Pd single-atom catalyst for controlling activity in direct formic acid fuel cells

description: This dataset contains the data supporting the figures presented in the manuscript “Thermal responsive Rh1-Pd single-atom catalyst for controlling activity in direct formic acid fuel cells”, enabling reproduction of the reported results.
DOI: 10.6084/m9.figshare.27217329
title: Tables

description: Each table holds it's own description in the respective sheet
DOI: 10.6084/m9.figshare.27217329.v1
title: Tables

description: Each table holds it's own description in the respective sheet
DOI: 10.6084/m9.figshare.30166948
title: Mechanical self-adaptive porous valve relying on surface tension for energy harvesting from low-flux bubbles

description: Source Data of the manuscript "Mechanical self-adaptive porous valve relying on surface tension for energy harvesting from low-flux bubbles"
DOI: 10.6084/m9.figshare.30166948.v1
title: Mechanical self-adaptive porous valve relying on surface tension for energy harvesting from low-flux bubbles

description: Source Data of the manuscript "Mechanical self-adaptive porous valve relying on surface tension for energy harvesting from low-flux bubbles"
DOI: 10.6084/m9.figshare.28847693
title: RAN MODULATES ALLOSTERIC CROSSTALK BETWEEN IMPORTIN β SURFACES

description: The models described in the manuscripts, along with the maps of these five models, have been uploaded. All models and maps have also been deposited in the wwPDB system.
DOI: 10.6084/m9.figshare.28847693.v1
title: RAN MODULATES ALLOSTERIC CROSSTALK BETWEEN IMPORTIN β SURFACES

description: The models described in the manuscripts, along with the maps of these five models, have been uploaded. All models and maps have also been deposited in the wwPDB system.
DOI: 10.34740/kaggle/dsv/14340921
title: Full TMDB Movies Dataset 2024 (1M Movies)
DOI: 10.6084/m9.figshare.29221940
title: PDB files and maps

description: PDB files + maps for RyR1 (wild-type and R615C) with and without atorvastatin
DOI: 10.6084/m9.figshare.29221940.v1
title: PDB files and maps

description: PDB files + maps for RyR1 (wild-type and R615C) with and without atorvastatin
DOI: 10.6084/m9.figshare.30505799
title: Multi-Ancestry Investigation of the Genomics of Erectile Dysfunction

description: GWAS summary statistics of Erectile Dysfunction in EUR, AFR and cross-ancestry populations.
DOI: 10.6084/m9.figshare.30505799.v1
title: Multi-Ancestry Investigation of the Genomics of Erectile Dysfunction

description: GWAS summary statistics of Erectile Dysfunction in EUR, AFR and cross-ancestry populations.
DOI: 10.6084/m9.figshare.28764941
title: Plasma proteomic profiles identify biomarkers predicting Crohn’s disease up to 16 years before onset

description: Protein data from the Southern China cohort included in the manuscript
DOI: 10.6084/m9.figshare.28764941.v1
title: Plasma proteomic profiles identify biomarkers predicting Crohn’s disease up to 16 years before onset

description: Protein data from the Southern China cohort included in the manuscript
DOI: 10.6084/m9.figshare.28383935
title: Phosphatase specificity influences phosphorylation timing of CDK substrates during the cell cycle

description: Processed phosphoproteomic dataset identifying substrates of four different phosphatases (PP2A-B55, PP2A-B56, CDC14 and PP1) in fission yeast. Table 1: CDK-dependent phosphatase substrates and CDK substrate sites, Table 2: CDK-independent phosphatase substrates and CDK-independent sites.
DOI: 10.6084/m9.figshare.28383935.v1
title: Phosphatase specificity influences phosphorylation timing of CDK substrates during the cell cycle

description: Processed phosphoproteomic dataset identifying substrates of four different phosphatases (PP2A-B55, PP2A-B56, CDC14 and PP1) in fission yeast. Table 1: CDK-dependent phosphatase substrates and CDK substrate sites, Table 2: CDK-independent phosphatase substrates and CDK-independent sites.
DOI: 10.5281/zenodo.18093165
title: پیوست ریاضی سی آر وی دی :منشأ هندسی کموتاتورها و عدم قطعیت انرژی–زمان

description: این نتایج نشان میدهند که ساختار ریاضی مکانیک کوانتومی را میتوان به صورت طبیعی از پیوستگی واکنشی فضا مشتق کرد
DOI: 10.5281/zenodo.18093166
title: پیوست ریاضی سی آر وی دی :منشأ هندسی کموتاتورها و عدم قطعیت انرژی–زمان

description: این نتایج نشان میدهند که ساختار ریاضی مکانیک کوانتومی را میتوان به صورت طبیعی از پیوستگی واکنشی فضا مشتق کرد
DOI: 10.6084/m9.figshare.30508391
title: Regional activity within the human amygdala varies with season, mood and illuminance

description: Data for box plot figures of the paper
DOI: 10.6084/m9.figshare.30508391.v1
title: Regional activity within the human amygdala varies with season, mood and illuminance

description: Data for box plot figures of the paper
DOI: 10.6084/m9.figshare.30425263
title: Source Data for the paper titled "Photothermal-Assisted NH3 Release in a Bipyridinium-Functionalized Metal-Organic Framework Adsorbent"

description: Source Data
DOI: 10.6084/m9.figshare.30425263.v1
title: Source Data for the paper titled "Photothermal-Assisted NH3 Release in a Bipyridinium-Functionalized Metal-Organic Framework Adsorbent"

description: Source Data
DOI: 10.15468/dl.arwe5g
title: Occurrence Download

description: A dataset containing 63741576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 63741576 records from 2397 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069034-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0207164.10fu
title: SH0207164.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207165.10fu
title: SH0207165.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207166.10fu
title: SH0207166.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207167.10fu
title: SH0207167.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207168.10fu
title: SH0207168.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207169.10fu
title: SH0207169.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207170.10fu
title: SH0207170.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207171.10fu
title: SH0207171.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207172.10fu
title: SH0207172.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0207173.10fu
title: SH0207173.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.