cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17294201.v1
title: Supplementary Material for: Circ-Ctnnb1 regulates neuronal injury in spinal cord injury through Wnt/β-catenin signaling pathway

description: Study design: Spinal cord injury (SCI) rat model and cell model were established for in vivo and in vitro experiments. Functional assays were utilized to explore the role of the circRNAs derived from catenin beta 1 (mmu_circ_0001859, circ-Ctnnb1 herein) in regulating neuronal cell viability and apoptosis. Bioinformatics analysis and mechanism experiments were conducted to assess the underlying molecular mechanism of circ-Ctnnb1. Objective: We aimed to probe into the biological function of circ-Ctnnb1 in neuronal cells of SCI. Methods: The rat model of SCI and hypoxia-induced cell model were constructed to examine circ-Ctnnb1 expression in SCI through quantitative reverse transcription real-time polymerase chain reaction (RT-qPCR). Basso, Beattie and Bresnahan (BBB) score was utilized for evaluating the neurological function. Terminal-deoxynucleoitidyl Transferase Mediated Nick End labeling (TUNEL) assays were performed to assess the apoptosis of neuronal cells. RNase R and Actinomycin D (ActD) were used to treat cells to evaluate the stability of circ-Ctnnb1. Results: Circ-Ctnnb1 was highly expressed in SCI rat models and hypoxia-induced neuronal cells, and its deletion elevated the apoptosis rate of hypoxia-induced neuronal cells. Furthermore, circ-Ctnnb1 activated the Wnt/β-catenin signaling pathway via sponging mircoRNA-205-5p (miR-205-5p) to up-regulate Ctnnb1 and Wnt family member 2B (Wnt2b). Conclusion: Circ-Ctnnb1 promotes SCI through regulating Wnt/β-catenin signaling via modulating the miR-205-5p/Ctnnb1/Wnt2b axis.
DOI: 10.48370/ofd/zhj5dl/ir5t1q
title: Betula pendula_liście z defoliacją 50 procent i zainfekowane Almillaria gallica oraz Phytophtora cactorum - ekstrakt substancji lotnych.pdf

description: :unav
DOI: 10.48370/ofd/zhj5dl
title: Betula pendula_liście z defoliacją 50 procent i zainfekowane Almillaria gallica oraz Phytophtora cactorum - ekstrakt substancji lotnych

description: ekstrakt substancji lotnych
DOI: 10.5525/gla.researchdata.1089
title: Statistical Dependencies Beyond Linear Correlations in Light Scattered by Disordered Media

description: The purpose of this dataset is to demonstrate the existence of a nonlinear correlation in randomly scattered fields that connects different realisations of the scattering medium and to show an example of image reconstruction through a scattering medium in the absence of any known linear correlations in particular speckle memory effect. For more details see Readme.pdf
DOI: 10.5517/ccdc.csd.cc23stsj
title: CCDC 1960278: Experimental Crystal Structure Determination

description: Related Article: Rekha, Sonam Sharma, Gurdeep Singh, Ramasamy Vijaya Anand|2021|ACS Org. Inorg. Au|2|186|doi:10.1021/acsorginorgau.1c00033
DOI: 10.23728/b2share.47d9dfa8d8dd4e5b8b7362cedd7fa82e
title: Participant dataset submitted by Sonicparanoid-fast

description: Participant dataset submitted by participant Sonicparanoid-fast for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.6084/m9.figshare.19534105
title: Gut Microbes Bifido Material for submission final

description: Gut Microbes Bifido Material for submission final
DOI: 10.48370/ofd/fjiyh2/glps4e
title: Betula pendula_liście zainfekowane Almillaria gallica oraz Phytophtora cactorum - ekstrakt substancji lotnych.pdf

description: :unav
DOI: 10.48370/ofd/fjiyh2
title: Betula pendula_liście zainfekowane Almillaria gallica oraz Phytophtora cactorum - ekstrakt substancji lotnych

description: ekstrakt substancji lotnych
DOI: 10.23728/b2share.5843343bb8474ae9b81ac68788fe5aea
title: Participant dataset submitted by Sonicparanoid-mostsens

description: Participant dataset submitted by participant Sonicparanoid-mostsens for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.6084/m9.figshare.19535248.v1
title: Palladium Catalyzed Synthesis of Novel Pyrido[3,4-d]pyridazin-1(2H)-one Analogues: Cytotoxic, Antidiabetic Potential and Molecular Docking

description: New derivatives of pyrido[3,4-<i>d</i>]pyridazin-1(2<i>H</i>)-one by palladium catalyzed
DOI: 10.23728/b2share.bf609954fa924834bc9228b99e9a65d4
title: Participant dataset submitted by Sonicparanoid-sens

description: Participant dataset submitted by participant Sonicparanoid-sens for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.23728/b2share.f1429e3b1a8c4a6b908f62712bbe3853
title: Participant dataset submitted by Hieranoid_2

description: Participant dataset submitted by participant Hieranoid_2 for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.15161/oar.it/75420
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated..
DOI: 10.23728/b2share.7cd9bb47cc9d47df9a33127ea0197ff4
title: Participant dataset submitted by PANTHER_16_all

description: Participant dataset submitted by participant PANTHER_16_all for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.12751/g-node.w5h68v
title: NFDI-Neuro Survey Data

description: The lack of reproducibility of research results is a serious problem – known as “the reproducibility crisis”. The German National Research Data Infrastructure (NFDI) initiative implemented by the German Research Foundation (DFG) aims to help overcoming this crisis by developing sustainable solutions for research data management (RDM). NFDI comprises domain specific consortia across all science disciplines. In the field of neuroscience, NFDI Neuroscience (NFDI-Neuro) contributes to the strengthening of systematic and standardized RDM in its research communities. NFDI-Neuro conducted a comprehensive survey amongst the neuroscience community to determine the current needs, challenges, and opinions with respect to RDM. The outcomes of this survey are presented here. The German neuroscience community perceives barriers with respect to RDM and data sharing mainly linked to (1) lack of data and metadata standards, (2) lack of community adopted provenance tracking methods, 3) lack of a privacy preserving research infrastructure for sensitive data (4) lack of RDM literacy and (5) lack of required time and resources for proper RDM. NFDI-Neuro aims to systematically address these barriers by leading and contributing to the development of standards, tools, and infrastructure and by providing training, education and support, as well as additional resources to its research community. The RDM work of NFDI-Neuro is conducted in close collaboration with its partner EBRAINS AISBL, the coordinating entity of the EU Flagship Human Brain Project, and its Research Infrastructure (RI) EBRAINS with more than 4500 registered users and developers from more than 30 countries. While NFDI-Neuro aims to address the national needs, it closely aligns with the international community and the topics of the Digital Europe Program and EU Data Spaces.
description: IsSupplementTo: Klingner C, Denker M, Grün S, Hanke M, Oeltze-Jafra S, Ohl FW, Radny J, Rotter S, Scherberger H, Stein A, Wachtler T, Witte OW, Ritter P (2022) Overcoming the Reproducibility Crisis - Results of the first Community Survey of the German National Research Data Infrastructure for Neuroscience. BioRxiv.
DOI: 10.23728/b2share.5b4aa5fc34e8452bb07117268881732a
title: Participant dataset submitted by PANTHER__16__LDO__only

description: Participant dataset submitted by participant PANTHER__16__LDO__only for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.17638/datacat.liverpool.ac.uk/1658
title: An Optimized Method to Decellularize Human Trabecular Meshwork (XCT Data Files)
DOI: 10.23728/b2share.2c37e536c265472783c940c41eb5122c
title: Predictions made by Domainoid+

description: Predictions made by participant Domainoid+ for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.23728/b2share.16d9324b60fe485c9c35dbaa9134e313
title: Participant dataset submitted by InParanoid_Xenfix

description: Participant dataset submitted by participant InParanoid_Xenfix for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.6084/m9.figshare.17138672
title: 3DS_WAVE_VELOCITYMODEL_EPS.dat

description: The first column in the provided text file for the S-wave velocity model represents the Latitude, second column is the Longitude, third column is the depth (after topography correction), the fourth column is the S-wave velocity.<br>We also provide the input text file for the parameters used in the inversion.
DOI: 10.6084/m9.figshare.17138672.v3
title: 3DS_WAVE_VELOCITYMODEL_EPS.dat

description: The first column in the provided text file for the S-wave velocity model represents the Latitude, second column is the Longitude, third column is the depth (after topography correction), the fourth column is the S-wave velocity.<br>We also provide the input text file for the parameters used in the inversion.
DOI: 10.5281/zenodo.6420938
title: Dataset for JGR-Atmospheres manuscript 2021JD036393

description: Data for JGR-Atmospheres manuscript 2021JD036393 Software: Python
DOI: 10.5281/zenodo.6420937
title: Dataset for JGR-Atmospheres manuscript 2021JD036393

description: Data for JGR-Atmospheres manuscript 2021JD036393 Software: Python
DOI: 10.5517/ccdc.csd.cc1zk3j5
title: CCDC 1833697: Experimental Crystal Structure Determination

description: Related Article: Yan Wang|2018|CSD Communication|||
description: Related Article: Hongping Zhang, Yan Wang, Yongguang Liu, Mingming Zhao, Congyan Liu, Yang Wang, Mohamed K. Albolkany, Niannian Wu, Min Wang, Luyun Yang, Bo Liu|2020|ChemSusChem|13|2945|doi:10.1002/cssc.202000356
DOI: 10.25375/uct.16831840
title: Effects of BCG vaccination on donor unrestricted T cells in two prospective cohort studies

description: The data were generated to address whether BCG vaccination can modulate donor unrestricted T cells by performing immunological analyses using flow cytometry on PBMC samples collected from infants and adults in clinical studies completed previously (doi: 10.4049/jimmunol.1501996). The results are published in Gela (2021) - Effects of BCG vaccination on donor unrestricted T cells in humans.<br>`data_tidy_gela_durt.zip` is the source code to compile the R package `DataTidyGelaDURT`, which provides the following datasets:<br>- data_tidy_freq_ifng: Background-subtracted frequencies of IFNg+ cells for various subsets.- data_tidy_freq: Frequencies of major cell populations- data_tidy_hladr_adult: HLADR mean fluorescent intensity (MFI) by cell type for infants.- data_tidy_hladr_infant: HLADR mean fluorescent intensity (MFI) by cell type for infants.- data_tidy_mem: Frequency of memory phenotype relative to the parent population.<br>- Note that the package is also available at https://github.com/SATVILab/DataTidyGelaDURT (where any issues can be raised as well).
DOI: 10.25375/uct.16831840.v1
title: Effects of BCG vaccination on donor unrestricted T cells in two prospective cohort studies

description: The data were generated to address whether BCG vaccination can modulate donor unrestricted T cells by performing immunological analyses using flow cytometry on PBMC samples collected from infants and adults in clinical studies completed previously (doi: 10.4049/jimmunol.1501996). The results are published in Gela (2021) - Effects of BCG vaccination on donor unrestricted T cells in humans.<br>`data_tidy_gela_durt.zip` is the source code to compile the R package `DataTidyGelaDURT`, which provides the following datasets:<br>- data_tidy_freq_ifng: Background-subtracted frequencies of IFNg+ cells for various subsets.- data_tidy_freq: Frequencies of major cell populations- data_tidy_hladr_adult: HLADR mean fluorescent intensity (MFI) by cell type for infants.- data_tidy_hladr_infant: HLADR mean fluorescent intensity (MFI) by cell type for infants.- data_tidy_mem: Frequency of memory phenotype relative to the parent population.<br>- Note that the package is also available at https://github.com/SATVILab/DataTidyGelaDURT (where any issues can be raised as well).
DOI: 10.5255/ukda-sn-855556
title: Public Petitions to the House of Commons, 1780-1918

description: The data contains two files that together record and classify over one million public petitions to the House of Commons, 1780-1918, by the subjects that they addressed, which in turn are placed into broader categories to facilitate analysis. For the 1833 to 1918 period, the data also records the 165 million signatures on public petitions to the House of Commons, classified by subject and category. The data was produced as part of a project examining the role of petitions and petitioning in the UK during the ‘long’ nineteenth century (1780-1918) as a universal form of political expression, participation, mobilisation and representative before democracy. This data enabled researchers to establish key chronological trends, and the key subjects and themes on which petitioners addressed the House of Commons. It was thus the foundation for the project. The data is based on aggregate of public petitions classified by subject. The data does not contain petitions to other authorities (e.g. the monarchy, local or central government, or the House of Lords); petitions to Parliament concerning private or local bills; petitions to Parliament regarding contested parliamentary elections; or the signatory lists for the petitions (as the original manuscript petitions do not survive). The data does not include the detail of specific petitions (e.g. the self-description of petitioners or specific location), rather it captures the number of aggregate petitions on particular topics.
DOI: 10.5281/zenodo.6420951
title: Data for "Title"

description: Full MS/ddMS2 data for the analysis of pesticide transformation products in selected wheat cultivars (Arcadia, Fidelius and Tobak).
DOI: 10.5281/zenodo.6420950
title: Data for "Title"

description: Full MS/ddMS2 data for the analysis of pesticide transformation products in selected wheat cultivars (Arcadia, Fidelius and Tobak).
DOI: 10.23728/b2share.e86e596dd2914a39be0981d0d39ed624
title: Participant dataset submitted by OMA_Pairs

description: Participant dataset submitted by participant OMA_Pairs for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.23728/b2share.bc5ca8b600e54bae8c4947386eae3301
title: Participant dataset submitted by OrthoMCL

description: Participant dataset submitted by participant OrthoMCL for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.23728/b2share.0f7cafe8f6c1488b9306d2efcaba8d22
title: Participant dataset submitted by OrthoInspector 3

description: Participant dataset submitted by participant OrthoInspector for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.5517/ccdc.csd.cc1q7z31
title: CCDC 1586583: Experimental Crystal Structure Determination

description: Related Article:  SafarKoopayeh, Barzin, Abbasi, Alireza,Janczak, Hab. Jan|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28mkr7
title: CCDC 2104179: Experimental Crystal Structure Determination

description: Related Article: SafarKoopayeh, Barzin, Abbasi, Alireza|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28rmg4
title: CCDC 2108076: Experimental Crystal Structure Determination

description: Related Article: SafarKoopayeh, Barzin, Abbasi, Alireza, Janczak, Hab. Jan|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc1j1z6r
title: CCDC 1402074: Experimental Crystal Structure Determination

description: Related Article: Abbasi, Alireza, SafarKoopayeh, Barzin, Kristof Van Hecke|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28rmk7
title: CCDC 2108079: Experimental Crystal Structure Determination

description: Related Article: Abbasi, Alireza, SafarKoopayeh, Barzin|2022|CSD Communication|||
DOI: 10.23728/b2share.9d885c1a698b466aa7f0c18ed53a07e8
title: Participant dataset submitted by Sonicparanoid

description: Participant dataset submitted by participant Sonicparanoid for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.6084/m9.figshare.19535572
title: Supplementary Material for: Nontraditional Risk Factors for Residual Recurrence Risk in Patients with Ischemic Stroke of Different Etiologies

description: <b><i>Background and Objective:</i></b> With the popularization of guideline-based secondary prevention based on traditional risk factors, rates of stroke recurrence reduced greatly after ischemic stroke (IS) or transient ischemic attack (TIA), but the residual risk still exists. We aim to evaluate which IS subtype benefits the most from the current secondary prevention and to evaluate nontraditional risk factors for residual recurrence risk of different IS etiologies. <b><i>Methods:</i></b> The study included IS/TIA patients who participated in both biomarker substudy and imaging substudy of the Third China National Stroke Registry. We used 5 guideline-recommended interventions (antiplatelet, statins, anticoagulant, antihypertensive, and antidiabetic therapies) to document the performance of secondary prevention care. Residual risk was defined as the risk of stroke recurrence despite adherence to these 5 guideline-based secondary prevention strategies. Risk factors associated with stroke recurrence were analyzed by using Cox regression models. <b><i>Results:</i></b> In total, 9,733 patients were included in this study. At 3 months, 4,186 (43.0%) patients adhered to 5 secondary prevention strategies, and the residual risk of recurrence was 5.1%. According to Trial of Org 10172 in Acute Stroke Treatment subtypes, cardioembolism benefited the most from current secondary prevention (relative risk reduction: 65.2%), followed by large-artery atherosclerosis (LAA) (29.0%) and small-artery occlusion (SAO) (20.0%). Despite adhering to secondary prevention strategies, high sensitivity C-reactive protein, interleukin-6 (IL-6) levels, and impaired renal function were independent risk factors for the residual recurrence risk of LAA subtype, while IL-6 and trimethylamine N-oxide significantly contributed to the residual risk of SAO subtype. <b><i>Conclusions:</i></b> LAA and SAO subtypes own the specific nontraditional risk factors while inflammation is a common risk factor for residual recurrence risk of both.
DOI: 10.5281/zenodo.5994557
title: Life cycle-based environmental impacts of energy scenarios - additional data

description: This data set documents additional results of the paper "Life cycle-based environmental impacts of energy system transformation strategies for Germany: Are climate and environmental protection conflicting goals?" (Tobias Naegler and co-authors, published in Energy Reports (2020), https://doi.org/10.1016/j.egyr.2022.03.143). It shows life cycle-based environmental impacts for 10 different transformation strategies for the German energy and transport system.
DOI: 10.5281/zenodo.5994556
title: Life cycle-based environmental impacts of energy scenarios - additional data

description: This data set documents additional results of the paper "Life cycle-based environmental impacts of energy system transformation strategies for Germany: Are climate and environmental protection conflicting goals?" (Tobias Naegler and co-authors, published in Energy Reports (2020), https://doi.org/10.1016/j.egyr.2022.03.143). It shows life cycle-based environmental impacts for 10 different transformation strategies for the German energy and transport system.
DOI: 10.25405/data.ncl.15081795
title: Sentiment analysis (polarity supervised classification) of Twitter data posted in English about the 10th anniversary of the 2010 Maule earthquake in Chile

description: This database contains the supervised classification of the tweets originally posted in English related to the 10th anniversary of the Maule Earthquake in Chile on Febrary 27, 2010. Tweets were collected by a third-party vendor between December 11, 2019 to April 23, 2020 including the hashtags: #27F, #Maule, #PorUnaLeyDeCostasEnChile, #Chile and #Terremoto. A total of 44,189 tweets were collected, from this sample, only 237 (0.54%) tweets were originally posted or retweeted in English, which can be explained by the fact that Chile is a Spanish speaking country. After removing the not related tweets the sample was reduced to 121 (0.27%). Despite being a small sample, based on additional analysis, we state that this is a representative sample of the opinions related to this commemoration. The high number of not related tweets is given that the hashtag #27F is also included in tweets related to celebrating the Independence of the Dominican Republic and the International Polar Bear Day; the birthday of José Vasconcelos (Mexican writer, philosopher, and politician), Elizabeth Taylor (American actress) and José Antonio Meade Kuribreña (Mexican politician). Other tweets that include the hashtag #27F are those commemorating the 'Caracazo' (protests, riots and looting that started on February 27 1989 in Caracas, Venezuela); the dead of Mauricio Garcés (Mexican actor) and Eyker Daniel Rojas (Venezuelan citizen assassinated during the Caracazo).
DOI: 10.25405/data.ncl.15081795.v2
title: Sentiment analysis (polarity supervised classification) of Twitter data posted in English about the 10th anniversary of the 2010 Maule earthquake in Chile

description: This database contains the supervised classification of the tweets originally posted in English related to the 10th anniversary of the Maule Earthquake in Chile on Febrary 27, 2010. Tweets were collected by a third-party vendor between December 11, 2019 to April 23, 2020 including the hashtags: #27F, #Maule, #PorUnaLeyDeCostasEnChile, #Chile and #Terremoto. A total of 44,189 tweets were collected, from this sample, only 237 (0.54%) tweets were originally posted or retweeted in English, which can be explained by the fact that Chile is a Spanish speaking country. After removing the not related tweets the sample was reduced to 121 (0.27%). Despite being a small sample, based on additional analysis, we state that this is a representative sample of the opinions related to this commemoration. The high number of not related tweets is given that the hashtag #27F is also included in tweets related to celebrating the Independence of the Dominican Republic and the International Polar Bear Day; the birthday of José Vasconcelos (Mexican writer, philosopher, and politician), Elizabeth Taylor (American actress) and José Antonio Meade Kuribreña (Mexican politician). Other tweets that include the hashtag #27F are those commemorating the 'Caracazo' (protests, riots and looting that started on February 27 1989 in Caracas, Venezuela); the dead of Mauricio Garcés (Mexican actor) and Eyker Daniel Rojas (Venezuelan citizen assassinated during the Caracazo).