cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gc182/9
title: FASTQ files for WGS samples (subset 7)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).
DOI: 10.5061/dryad.h172b/1
title: O'Corry-Crowe et al 2016 - Biology Letters - mtDNA data

description: mtDNA haplotype sequence data for beluga whales
DOI: 10.5061/dryad.h172b/2
title: O'Corry-Crowe et al 2016 - Biology Letters - microsat data

description: microsatellite data for beluga whales
DOI: 10.5061/dryad.jh146/1
title: genepop_50_atlantic_salmon_pop

description: Genepop file of the 50 Atlantic salmon populations:10 rivers (GOD, GPA, LAV, MAL, MAT, PCA, ROC, SJE, SMA, TRI) sampled over 5 consecutive years.
DOI: 10.5061/dryad.m2821/1
title: VCF of all SNPs

description: SNPs from 38 members of An. gambiae and An. coluzzii
DOI: 10.5061/dryad.m2821/2
title: VCF of Bamako SNPs

description: SNPs retained and filtered for the Bamako population only
DOI: 10.5061/dryad.m5648/1
title: Data used in the paper

description: "Databighorn" is a dataframe with 14 variables: 1) id = male’s identity, 2) year, 3) loggrowth = log-transformed annual horn growth, 4) density = number of adult females aged 2 years and older in June, 5) age = male’s age,  6) temp.spring = average temperature in spring, 7) prec.spring = precipitation in spring, 8) temp.summer = average temperature in summer, 9) prec.summer = precipitation in summer, 10) temp.winter = average temperature in winter, 11) prec.winter = precipitation in winter, 12) PDOwinter = Pacific decadal oscillation in winter, 13) PDOspring = Pacific decadal oscillation in spring, 14) PDOsummer = Pacific decadal oscillation in summer. All explanatory variables have been centered and divided by the standard deviation.
DOI: 10.5061/dryad.m5694/1
title: DRYAD

description: Volumetric data for all measured neuropils and total brain.
DOI: 10.5061/dryad.pb5vv/1
title: Opsin Alignment1

description: Multiple sequence COBALT alignment putative Odonata and Ephemeroptera opsin protein sequences including homologous opsin sequences from mollusks (outgroup).
DOI: 10.5061/dryad.q5451/1
title: Matlab code

description: tradeoffs.m is the function to model thermal niche evolution along elevations with seasonal variation in temperature, assuming tradeoffs in performance under different temperatures. notradeoffs.m is the function to model thermal niche evolution along elevations with seasonal variation in temperature, assuming no tradeoffs in performance under different temperatures. gradspeciation.m is the function to model evolution in haplotype clines along elevation with seasonal variation in temperature. Haplotypes are consist of two epistatic loci that may or may not have pleiotropic effects on the evolution of thermal tolerance.
DOI: 10.5061/dryad.sm55f/1
title: Full_Results_Mariotte

description: Full data used in the manuscript. Plant C, N and P. Soil N and P. Soil moisture. Mycorrhizal root colonisation. Plant biomass.
DOI: 10.5061/dryad.td27r/1
title: Appendix 1 - List to Exsiccatae

description: Appendix 1 - List to Exsiccatae - Tovomita (Clusiaceae) from the Brazilian Atlantic Forest
DOI: 10.5061/dryad.tk0b8/22
title: Dorsal view of labrum of I. tobini n. sp. with deep medial incision (Fig. 7E)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/23
title: Anterior view of labrum of I. tobini n. sp. with heavily porous surface (Fig. 7F)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/24
title: Dorsal view of anterior region of head and labrum of I. tobini n. sp. (Fig. 8A)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/25
title: Ventrolateral (right) view of gonopods of I. tobini n. sp. (Figs 8C, 17E)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/26
title: Anteroventral view of gonopods of I. tobini n. sp. (Figs 8E, 18E)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/27
title: Ventral view of gonopods of I. tobini n. sp. (Figs 9A, E)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/28
title: Lateral (right) view of right anterior gonopod (leg-pair 9) of I. tobini n. sp. (Fig. 9C)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/29
title: Dorsal view of trunk of I. tobini n. sp. (Figs 10A, 16A)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/30
title: Dorsal view of left ozopore of I. tobini n. sp. (Fig. 10C)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.v09hh/1
title: Betini et al. calcium and temperature effects on movement

description: temperature: temperature treatment used in the experiment in oCcalcium: calcium level used in the experiment in mg/LindividualID: unique id of each individual used in the experiment, within each temperature levelstart_position: position relative to the ruler where each individual start each stepdirection: whether individual moved to the right (R) or left (L) in each steptime: time of each step in seconds ofdistance: distance of each step in cm
DOI: 10.5061/dryad.vs970/1
title: FA_ontogeny

description: This is a tps file containing 2-D digitized landmarks of dorsal head view of adult and juvenile Podarcis muralis individuals. 28 landmarks were taken on each specimen. Landmark recording was repeated twice for each animal.
DOI: 10.5061/dryad.vs970/2
title: classifier

description: This is a text file containing identifier variables associated with the individuals in the companion tps file. ID numbers corresponding to ID numbers in the tps file. Ind number refers to individual animals, Age_Class indicates whether individual is adult or juvenile (A=adult, J=juvenile), Pop indicates location where the animals were collected (P or S, p=urban population, s=rural population). Landmark recording was repeated twice for each animal and is indicated by Image (1 or 2).
DOI: 10.17632/nvcshtb27p.4
title: Webometrics data (Russian agrarian universities, 54 sites)

description: Information from sites of Russian Agrarian University - 54 sites - (May, 2016) obtained by using service http://www.site-auditor.ru/ Language: Russian Type: Excel file Size: 0,25Mb
DOI: 10.5061/dryad.0bk52/6
title: Lork_redclover_GFF3

description: Annotation file (GFF3) for genotype "Lork" generated by GFF3 python script (script can be found at the end)
DOI: 10.5061/dryad.0bk52/7
title: Make_GFF3_Python script

description: Python script to generate Annotation files (GFF3) for genotypes Tripo (Tripo_redclover_sorted.gff3) and Lork (Lork_redclover_sorted.gff3).
DOI: 10.5061/dryad.233hb/1
title: Asia and Oceania releases

description: The dataset contains the particle tracking runs for the coastline of Asia and Oceania. 3 runs were carried out using the velocity field of three different decades: 2000-09, 2050-59 and 2090-99 and released particles were tracked backwards in time for 12 months.
DOI: 10.5061/dryad.233hb/2
title: Releases Europe and Africa
DOI: 10.5061/dryad.233hb/3
title: Releases North America
DOI: 10.5061/dryad.233hb/4
title: Releases South America
DOI: 10.5061/dryad.233hb/5
title: Matlab script to extract each ASCIIdata

description: A step by step procedure to extract trajectories from the datasets
DOI: 10.5061/dryad.233hb/6
title: Explanation_ASCII_data

description: Description of datasets content
DOI: 10.5061/dryad.2bp67/1
title: Egg predation data

description: This file contains two worksheets. One worksheet contains data for all trials with the time to consumption for each egg. Additional notes are provided if the egg was removed from the analyses. The second worksheet includes binary data to identify all eggs that were consumed first in the trials.
DOI: 10.5061/dryad.2h3f2/1
title: Coordinates of Hosts
DOI: 10.5061/dryad.2h3f2/10
title: Maps of predicted distribution of ticks
DOI: 10.5061/dryad.2h3f2/13
title: Maps of predicted distribution of hosts
DOI: 10.5061/dryad.2h3f2/14
title: Dataset of records of ticks, hosts, and pathogens (with climate and coordinates) in Western Palearctic

description: This file contains a description of the data package contents for Estrada-Peña and de la Fuente (2016) "Species interactions in occurrence data for a community of tick-transmitted pathogens"
DOI: 10.5061/dryad.2h3f2/3
title: Calculating CwHO
DOI: 10.5061/dryad.2h3f2/5
title: Coordinates of ticks with hosts records
DOI: 10.5061/dryad.2h3f2/6
title: Data for networks
DOI: 10.5061/dryad.2h3f2/8
title: Environmental variables
DOI: 10.5061/dryad.2h3f2/9
title: Fourier coefficients
DOI: 10.5061/dryad.34h7v/1
title: Sulfatase_mutant_sequences

description: Sequence data for three CRISPR/Cas9 generated mutants:  1) sul-2.2.1(iub1); eud-1(iub14)      2) sul-2.2.1(iub2); eud-1(california/wild-type)   3) sul-2.1(iub3). Please note: The experimental data reported in Figures 3 and 4 of the associated publication (Ragsdale and Ivers. 2016. Evolution. doi:10.1111/evo.13011) are available at http://dx.doi.org/10.5061/dryad.dh38s
DOI: 10.5061/dryad.38s8g/3
title: GalliformPhylogeny
DOI: 10.5061/dryad.38s8g/4
title: PhylogeneticStandardization
DOI: 10.5061/dryad.46092/1
title: PRSB_qyc_forDIYABC_3pops

description: input data file for DIYABC v. 2 for Quietula y-cauda
DOI: 10.5061/dryad.46092/2
title: PRSB_fpa_forDIYABC_3pops_withoutFMA8,15

description: input data file for DIYABC for Fundulus parvipinnis
DOI: 10.5061/dryad.46092/3
title: PRSB_gmi_forDIYABC_3pops

description: input data file for DIYABC for Gillichthys mirabilis
DOI: 10.5061/dryad.46092/4
title: Microsatellite allele copy number data

description: allele copy number data for all 3 species used for the genetic Discriminant Function Analysis ('genetic DFA). Microsatellite fragment lengths are alleles, and individuals can have 0 copies of an allele, 1 copy of an allele (heterozygous) or 2 copies of an allele (homozygous).
DOI: 10.5061/dryad.46092/5
title: forTraining_ModernPolygonAttributes

description: Habitat attribute data (based on polygons meeting slope/bathymetry requirements in ArcGIS) for the modern (0 +/- 5 mbpsl) depth bin. These data were used to train the discriminant function analysis ('habitat DFA') to identify variables that predict presence (yes) or absence (no) of our focal species.
DOI: 10.5061/dryad.46092/6
title: Habitat Attribute Data

description: Polygon attribute data on which the DFA and GLMs were performed to assess the habitat models.
DOI: 10.5061/dryad.46092/7
title: FMA28Apr2013_CONVERT_5Feb2014_STRUCTURE

description: Microsatellite data in input file for STRUCTURE for Fundulus parvipinnis
DOI: 10.5061/dryad.4rb47/1
title: Video S1

description: Oxidative stress induces increase in cytosolic nitric oxide in stellate cells. Pancreatic tissue lobule, containing numerous PACs that form the acini, and three PSCs in the centre, were loaded with DAF-FM fluorescent NO indicator. The lobule followed the challenge with 0.5 mM H2O2, which exerted increase in fluorescence in PSCs (time [real-time]: baseline: 00:00:00-04 [3 min], stimulation 00:00:04-18 [10.5 min]). See also Fig. S1.
DOI: 10.5061/dryad.508g5/1
title: Data from phylogenetic analysis
DOI: 10.5061/dryad.640j4/1
title: Vogwill et al Proc B divergent evolution and bottlenecks

description: Growth rates and mutation data for Vogwill et al (divergent evolution and bottlenecks). Tab 1 contains growth rates, tab 2 contains the identified mutations for each clone.
DOI: 10.5061/dryad.7cv4g/1
title: HBH_stable_3.r1.fastq

description: raw reads from coral of Houbihu with stable temperature conditions (left side)
DOI: 10.5061/dryad.7cv4g/2
title: HBH_stable_3.r2.fastq

description: raw reads from coral of Houbihu with stable temperature conditions (right side)
DOI: 10.5061/dryad.8bp16/1
title: Ultrasound data (two-dimensional matrices of data)

description: A MATLAB (The MathWorks, Inc., MA, USA) script reads the RF frames that were acquired by the ultrasound scanner. The acquired RF signals were processed and converted to a two-dimensional matrix M(i,j) (i.e., “file_name.mat”) where i represents the ith line of sight of the image (x axis) and j is the index of the time samples of each line of sight (y axis). The chosen “file_name.mat” can be defined as follows: “a_b_c.mat” where a stands for the dual-mode microbubble (MB) type that was analysed (i.e., MB-plain, MBN-into15, MBN-into38, and MBN-on29); b describes the imaging technique that was applied (CPS3 or Chirp CPS3); c represents the negative peak pressure at the focus depth (230 or 320 kPa). The ultrasound images were generated by processing the two-dimensional matrices by implementing the same functions as those used on the back end of the scanner system (i.e., envelope detection and logarithmic compression). Finally, the data can be used to calculate the contrast-to-tissue ratio (CTR), following the procedure described in the manuscript.
DOI: 10.5061/dryad.8d1t2/1
title: Appendix S1

description: Measurement taken on the crown and enamel and dentin layers of the gomphodont and sectorial postcanines of Cricodon metabolus UCMZ T905 (Excel file)
DOI: 10.5061/dryad.bc80t/1
title: Oyster right valve sizes (≥65 mm shell height)

description: This data file contains the body size data for oyster (Crassostrea virginica) right valves ≥65 mm in height used in a BACI analysis to assess the impacts of the Deepwater Horizon oil spill on intertidal C. virginica populations in coastal Louisiana, USA.
DOI: 10.5061/dryad.bj82r/1
title: Cynipid species inducing nectar-secreting galls

description: Cynipid species inducing galls known to secrete nectar, with information on their galls.  Data collected from the literature and personal field observations.
DOI: 10.5061/dryad.bj82r/2
title: Specimen collection and sequencing details, including GenBank accession numbers.

description: Specimen collection and sequencing details, including GenBank accession numbers.  Species names in bold are nectar secretors; individual codes in italics indicate Disholcaspis species included in the Cynipini-wide analyses.  Four species currently classified as belonging to the genus Disholcaspis (D. chrysolepidis, D. corallina, D. plumbella and D. sulcata) were excluded from the Disholcaspis study as sequence data (see Figure 2) and morphology (see Melika and Abrahamson 2002) both indicate they are not true Disholcaspis.
DOI: 10.5061/dryad.bj82r/3
title: Posterior probabilities of nectar secretion or no nectar secretion at ancestral nodes within the Disholcaspis phylogeny.

description: Posterior probabilities of nectar secretion or no nectar secretion at ancestral nodes within the Disholcaspis phylogeny (nodes numbered in insert).  Posterior probabilities of ancestral character states are presented for the full set of models visited in the rjMCMC run (columns 2 & 3), those under a symmetric reversible model (columns 4 & 5) and under a model where the rate of change of nectar to no nectar was fixed at zero (columns 6 & 7).  The final set of columns indicate likelihoods of models run with the respective node fixed to one or other character state, and the result of a Bayes factor test comparing the two models.
DOI: 10.5061/dryad.bj82r/4
title: Cynipini cytb sequences

description: Alignment of Cynipini cytochrome b sequences
DOI: 10.5061/dryad.bj82r/5
title: Cynipini D2 sequences

description: Alignment of Cynipini 28S D2 sequences
DOI: 10.5061/dryad.bj82r/6
title: Cynipini opsin sequences

description: Alignment of Cynipini opsin sequences
DOI: 10.5061/dryad.bj82r/7
title: Disholcaspis cytb sequences

description: Alignment of Disholcaspis cytochrome b sequences
DOI: 10.5061/dryad.c3g3b/1
title: Pirrello et al. Moult LPS starlings
DOI: 10.5061/dryad.f2j00/6
title: Histograms of pairwise percentage identity scores of the most abundant transposable element families for all five studied T. officinale accessions

description: Methods are detailed in the manuscript.
DOI: 10.5061/dryad.f4h2h/1
title: DNA_matrix_trees_Caesalpinia

description: This zip files contains the DNA alignments used to study the phylogeny of the Caesalpinia group. It also contains the files used in the Bayesian, Parsimony and Maximum likelihood phylogenetic analyses, along with the main results.
DOI: 10.5061/dryad.g1n25/10
title: Lime_appl_2014_1970

description: Econ data file: "Lime_appl_2014_1970.csv" — schedule of lime applications to the site by plot ID (tons per acre). Rates given for applications in 1975, 1983, 1991, 2001, 2012. See Cook and Trlica (2016).
DOI: 10.5061/dryad.g1n25/3
title: Tillage x Fertility R script for data collation

description: "TxF_Economics_data_collation_final.R" is the R script file used to process and data files and generate cost, price, and profit estimates used in Trlica et al. (2017). All costs and prices quoted in U.S. dollars ($). Additional price and index information gathered from other reports and sources integrated into final price sheet are detailed in the R script and in Trlica et al. (2017). The "Econ data" files can be used with this script if you direct it at the right file folder, should be able to reproduce all the output files that we used for analysis.
DOI: 10.5061/dryad.g1n25/4
title: Ag_lime_2014-1970_price

description: Econ data file: "Ag_lime_2014-1970_price.csv" — Agricultural lime (CaCO3) price, applied to field, U.S. Average, 1970–2014 (USDA NASS Quick Stats download).
DOI: 10.5061/dryad.g1n25/5
title: Amm_nit_2014_1970_price

description: Econ data file: "Amm_nit_2014_1970_price.csv" — Ammonium nitrate price (nominal $/ton), U.S. Average, 1970–2014 (USDA NASS Quick Stats download).
DOI: 10.5061/dryad.g1n25/6
title: corn_price_USDANASS

description: Econ data file: "corn_price_USDANASS.csv" — Corn sale price (nominal $/bu), U.S. Average, 1970-2014 (USDA NASS Quick Stats download)
DOI: 10.5061/dryad.g1n25/7
title: Gly_2014_2001_prices

description: Econ data file: "Gly_2014_2001_prices.csv" — Glyphosate price (4 lb ai/U.S. gal), U.S. Average, 2001-2014 (USDA NASS Quick Stats download).
DOI: 10.5061/dryad.g1n25/8
title: Herb_use

description: Econ data file: "Herb_use.csv" — schedule of post-emergent herbicide applications used on No-till plots, 1970–2014: Gly_lbsai (Glyphosate, lbs a.i./ac), Para_lbsai (Paraquat, lbs a.i. per acre) See Cook and Trlica (2016).
DOI: 10.5061/dryad.g1n25/9
title: Labor_Unsorted

description: Econ data file: "Labor_Unsorted.csv" — unsorted labor wage rates, U.S. Average, 2015–1978 (USDA NASS Quick Stats download).
DOI: 10.5061/dryad.gc182/11
title: FASTQ files for WGS samples (subset 9)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).
DOI: 10.5061/dryad.gc182/12
title: FASTQ files for WGS samples (subset 10)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).
DOI: 10.5061/dryad.gc182/13
title: FASTQ files for WGS samples (subset 11)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).
DOI: 10.5061/dryad.gc182/14
title: FASTQ files for WGS samples (subset 12)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).
DOI: 10.5061/dryad.gv0hb/1
title: Costanzo et al_data_Telomeres, brood size and offspring signals
DOI: 10.5061/dryad.jj456/1
title: TOXSCI 160110 Repository data

description: Data used to created Figures 5-9.
DOI: 10.5061/dryad.k0v67/1
title: SupplMat-What is long-distance dispersal?

description: Species and study site for the case study presented, sampling seeds methods, and lab method for genotyping trees and seeds.  Summary table on genetic neighborhood sizes.
DOI: 10.5061/dryad.pb5vv/2
title: Opsin Alignment2

description: Multiple sequence COBALT alignment of putative Odonata and Ephemeroptera opsin protein sequences including homologous opsin sequences from mollusks (outgroup). All partial opsin sequences (&lt; 1056 bp and &lt; 7 transmembrane domains) were excluded.
DOI: 10.5061/dryad.pb5vv/3
title: Opsin Alignment3

description: Multiple sequence COBALT alignment of putative Odonata and Ephemeroptera opsin protein sequences including homologous opsin sequences from mollusks (outgroup) combined with opsins identified in (Futahashi et al. 2015).
DOI: 10.5061/dryad.pb5vv/4
title: Bayesian "diffusion" model

description: Naive Bayesian model of selection "diffusion" written in R programming language.
DOI: 10.5061/dryad.pb5vv/5
title: Transcriptome Trinity assemblies

description: Transcriptome Trinity assemblies. NCBI accession numbers of raw RNA-seq libraries that were used to assemble transcriptomes: SRR2164542SRR2164543SRR2164551SRR2164552SRR2157378SRR2157379SRR2157380SRR2157381SRR2157382SRR2157383SRR2164544SRR2164545SRR2157367SRR2164546SRR2164547SRR2164548SRR2157371SRR2157372SRR2164549SRR2164550
DOI: 10.5061/dryad.q1t87/1
title: Common dolphins microsatellite genotypes

description: This data file contains long-beaked and short-beaked common dolphin genotypes for 16 microsatellite loci.
DOI: 10.5061/dryad.q8s5k/1
title: Data sharing at the BMJ from 2009-2015

description: Data sharing at the BMJ from 2009-2015.  This data was collected using publicly available data (BMJ research archive) and then by emailing authors to request access to their raw datasets.
DOI: 10.5061/dryad.r59hv/1
title: Vole individual data of treatment groups, infection status and innate immune indices.

description: Data
DOI: 10.5061/dryad.tk0b8/31
title: Dorsal view of metazonite posterior margin (limbus) of I. tobini n. sp. (Fig. 10E)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/32
title: Ventrolateral view of apodous ring, telson, hypoproct and paraprocts of I. tobini n. sp. (Fig. 11A)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/33
title: Anterolateral (left) view of gnathochilarial stipes and dorsal surface of endochilarium of I. tobini n. sp. (Fig. 14A)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/34
title: Anterior view of gnathochilarium of I. tobini n. sp. with inner and outer palps (inner, outer palps with 3, 2 setae respectively) (Fig. 14B)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.