cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3101785
title: Scale impacts on spatial variability in reference evapotranspiration

description: Evapotranspiration (ET) is one of the most important components in the hydrological cycle, and a key variable in hydrological modelling and water resources management. However, understanding the impacts of spatial variability in ET and the appropriate scale at which ET data should be incorporated into hydrological models, particularly at the regional scale, is often overlooked. This is in contrast to dealing with the spatial variability in rainfall data where existing guidance is widely available. This paper assesses the impacts of scale on the estimation of reference ET (ETo) by comparing data from individual weather stations against values derived from three national datasets, at varying resolutions. These include the UK Climate Impacts Programme 50 km climatology (UKCP<sub>50</sub>), the UK Met Office 5 km climatology (UKMO<sub>5</sub>) and the regional values published in the Agricultural Climate of England and Wales (ACEW). The national datasets were compared against the individual weather station data and the UKMO<sub>5</sub> was shown to provide the best estimate of ETo at a given site. The potential impacts on catchment modelling were then considered by mapping variance in ETo to show how geographical location and catchment size can have a major impact, with small lowland catchments having much higher variance than those with much larger areas or in the uplands. Some important implications for catchment hydrological modelling are highlighted.<b>Editor</b> D. Koutsoyiannis; <b>Associate editor</b> L. Ruiz <b>Editor</b> D. Koutsoyiannis; <b>Associate editor</b> L. Ruiz
DOI: 10.6084/m9.figshare.3101785.v1
title: Scale impacts on spatial variability in reference evapotranspiration

description: Evapotranspiration (ET) is one of the most important components in the hydrological cycle, and a key variable in hydrological modelling and water resources management. However, understanding the impacts of spatial variability in ET and the appropriate scale at which ET data should be incorporated into hydrological models, particularly at the regional scale, is often overlooked. This is in contrast to dealing with the spatial variability in rainfall data where existing guidance is widely available. This paper assesses the impacts of scale on the estimation of reference ET (ETo) by comparing data from individual weather stations against values derived from three national datasets, at varying resolutions. These include the UK Climate Impacts Programme 50 km climatology (UKCP<sub>50</sub>), the UK Met Office 5 km climatology (UKMO<sub>5</sub>) and the regional values published in the Agricultural Climate of England and Wales (ACEW). The national datasets were compared against the individual weather station data and the UKMO<sub>5</sub> was shown to provide the best estimate of ETo at a given site. The potential impacts on catchment modelling were then considered by mapping variance in ETo to show how geographical location and catchment size can have a major impact, with small lowland catchments having much higher variance than those with much larger areas or in the uplands. Some important implications for catchment hydrological modelling are highlighted.<b>Editor</b> D. Koutsoyiannis; <b>Associate editor</b> L. Ruiz <b>Editor</b> D. Koutsoyiannis; <b>Associate editor</b> L. Ruiz
DOI: 10.6084/m9.figshare.3101617
title: A two dimensional electromechanical model of a cardiomyocyte to assess intra-cellular regional mechanical heterogeneities

description: This file collection include the files for creating a phanthom/synthetic data of cardiomyocyte use for validating a computational model.<br>Also include the line T-tubule and Ca2+ images from 3 real cells used to estimate the local elasticity of them with a computational model<br><br>
DOI: 10.6084/m9.figshare.3101359
title: Target enrichment of thousands of ultraconserved elements sheds new light on early relationships within New World sparrows (Aves: Passerellidae)

description: Sparrows in the nine-primaried oscine family Passerellidae represent an attractive model for studying avian diversification across North and South America. However, the lack of phylogenetic resolution at the base of the New World sparrow tree has hampered the use of the existing sparrow phylogeny to test questions about the evolution of sparrow traits. We generated phylogenomic data from 1,063 ultraconserved elements to estimate phylogenetic relationships among the major clades of New World sparrows. Concatenated and species tree analyses of 271,830 base-pairs of sequence data converged on a well-supported phylogeny that differs from previous estimates. The resolved backbone of the sparrow phylogeny provides new insight into the biogeography of this radiation by suggesting both a tumultuous biogeographic history with many colonizations of South America, as well as several independent ecological transitions to different habitat types.
DOI: 10.6084/m9.figshare.3101269
title: Computer Program Clustering

description: GRank K-Means ranking-based clustering using AHP, TOPSIS and WSM ranking algorithm<br>
DOI: 10.6084/m9.figshare.3101359.v2
title: Target enrichment of thousands of ultraconserved elements sheds new light on early relationships within New World sparrows (Aves: Passerellidae)

description: Sparrows in the nine-primaried oscine family Passerellidae represent an attractive model for studying avian diversification across North and South America. However, the lack of phylogenetic resolution at the base of the New World sparrow tree has hampered the use of the existing sparrow phylogeny to test questions about the evolution of sparrow traits. We generated phylogenomic data from 1,063 ultraconserved elements to estimate phylogenetic relationships among the major clades of New World sparrows. Concatenated and species tree analyses of 271,830 base-pairs of sequence data converged on a well-supported phylogeny that differs from previous estimates. The resolved backbone of the sparrow phylogeny provides new insight into the biogeography of this radiation by suggesting both a tumultuous biogeographic history with many colonizations of South America, as well as several independent ecological transitions to different habitat types.
DOI: 10.6084/m9.figshare.3101359.v1
title: Target enrichment of thousands of ultraconserved elements sheds new light on early relationships within New World sparrows (Aves: Passerellidae)

description: Sparrows in the nine-primaried oscine family Passerellidae represent an attractive model for studying avian diversification across North and South America. However, the lack of phylogenetic resolution at the base of the New World sparrow tree has hampered the use of the existing sparrow phylogeny to test questions about the evolution of sparrow traits. We generated phylogenomic data from 1,063 ultraconserved elements to estimate phylogenetic relationships among the major clades of New World sparrows. Concatenated and species tree analyses of 271,830 base-pairs of sequence data converged on a well-supported phylogeny that differs from previous estimates. The resolved backbone of the sparrow phylogeny provides new insight into the biogeography of this radiation by suggesting both a tumultuous biogeographic history with many colonizations of South America, as well as several independent ecological transitions to different habitat types.
DOI: 10.6084/m9.figshare.3101221
title: Adaptive significance of coat colouration and patterns of Sciuromorpha (Rodentia)

description: An analysis on the adaptive meaning of coat colouration and colour patterns in Sciuromorpha, a successful group within rodents, was carried out. We ran analyses with and without taking into account the phylogeny of Sciuromorpha, by building up a comprehensive phylogenetic tree based on the published literature, as well as by testing a number of hypotheses connecting coat colouration or patterns with eco-behavioural traits of this mammalian group. We found that coat characteristics in these rodents are mostly related to concealment, with associations between colouration/patterns and habitats where each species lives. Communication also seems to play a role in shaping colourations in Sciuromorpha, particularly concerning extremities, with conspicuous ear/face markings and tail patterns being associated with social species; a role for interspecific communication as an antipredatory strategy is also discussed for tail patterns. Thus, concealment seems to be the primary driving force shaping coat colours in Sciuromorpha, with social communication and regulation of physiological processes playing minor roles.
DOI: 10.6084/m9.figshare.3101245
title: Advances in understanding genomic markers and pharmacogenetics of Parkinson’s disease

description: <b>Introduction</b>: The inheritance pattern of Parkinson’s disease (PD) is likely multifactorial (owing to the interplay of genetic predisposition and environmental factors). Many pharmacogenetic studies have tried to establish a possible role of candidate genes in PD risk. Several studies have focused on the influence of genes in the response to antiparkinsonian drugs and in the risk of developing side-effects of these drugs. <b>Areas covered</b>: This review presents an overview of current knowledge, with particular emphasis on the most recent advances, both in case-control association studies on the role of candidate genes in the risk for PD as well as pharmacogenetic studies on the role of genes in the development of side effects of antiparkinsonian drugs. The most reliable results should be derived from meta-analyses of case-control association studies on candidate genes involving large series of PD patients and controls, and from genome-wide association studies (GWAS). <b>Expert opinion</b>: Prospective studies of large samples involving several genes with a detailed history of exposure to environmental factors in the same cohort of subjects, should be useful to clarify the role of genes in the risk for PD. The results of studies on the role of genes in the development of side-effects of antiparkinsonian drugs should, at this stage, only be considered preliminary.
DOI: 10.6084/m9.figshare.3101245.v1
title: Advances in understanding genomic markers and pharmacogenetics of Parkinson’s disease

description: <b>Introduction</b>: The inheritance pattern of Parkinson’s disease (PD) is likely multifactorial (owing to the interplay of genetic predisposition and environmental factors). Many pharmacogenetic studies have tried to establish a possible role of candidate genes in PD risk. Several studies have focused on the influence of genes in the response to antiparkinsonian drugs and in the risk of developing side-effects of these drugs. <b>Areas covered</b>: This review presents an overview of current knowledge, with particular emphasis on the most recent advances, both in case-control association studies on the role of candidate genes in the risk for PD as well as pharmacogenetic studies on the role of genes in the development of side effects of antiparkinsonian drugs. The most reliable results should be derived from meta-analyses of case-control association studies on candidate genes involving large series of PD patients and controls, and from genome-wide association studies (GWAS). <b>Expert opinion</b>: Prospective studies of large samples involving several genes with a detailed history of exposure to environmental factors in the same cohort of subjects, should be useful to clarify the role of genes in the risk for PD. The results of studies on the role of genes in the development of side-effects of antiparkinsonian drugs should, at this stage, only be considered preliminary.
DOI: 10.6084/m9.figshare.3101221.v1
title: Adaptive significance of coat colouration and patterns of Sciuromorpha (Rodentia)

description: An analysis on the adaptive meaning of coat colouration and colour patterns in Sciuromorpha, a successful group within rodents, was carried out. We ran analyses with and without taking into account the phylogeny of Sciuromorpha, by building up a comprehensive phylogenetic tree based on the published literature, as well as by testing a number of hypotheses connecting coat colouration or patterns with eco-behavioural traits of this mammalian group. We found that coat characteristics in these rodents are mostly related to concealment, with associations between colouration/patterns and habitats where each species lives. Communication also seems to play a role in shaping colourations in Sciuromorpha, particularly concerning extremities, with conspicuous ear/face markings and tail patterns being associated with social species; a role for interspecific communication as an antipredatory strategy is also discussed for tail patterns. Thus, concealment seems to be the primary driving force shaping coat colours in Sciuromorpha, with social communication and regulation of physiological processes playing minor roles.
DOI: 10.6084/m9.figshare.3101104
title: Data_nectar_GTX_spatial.csv

description: Data from: Plant toxin levels in nectar vary spatially across native and introduced populations. Journal of EcologyData file containing individual plant coordinates, nectar GTX concentration and climatic and environmental covariates
DOI: 10.6084/m9.figshare.3101074
title: Additional file 1.docx

description: <b>Energy densities in the food pellets of standard chow diet and high carbohydrate high fat (HCHF) diet </b>
DOI: 10.6084/m9.figshare.3101074.v1
title: Additional file 1.docx

description: <b>Energy densities in the food pellets of standard chow diet and high carbohydrate high fat (HCHF) diet </b>
DOI: 10.6084/m9.figshare.3100966.v1
title: Rubin, Evans, & Wilkinson - Data Package

description: <i></i>This data package contains the research survey, deidentified data set, associated SPSS syntax file, and variable naming information for the following research article: Rubin, M., Evans, O., & Wilkinson, R. B. (2016). A longitudinal study of the relations between university students’ subjective social status, social contact with university friends, and mental health and well-being.<i> </i><i><i>Journal of Social and Clinical Psychology.<br><br></i></i>If you are interested in analysing the data from this data set, then please contact Mark.Rubin@newcastle.edu.au to discuss the ethical issues. <br>
DOI: 10.6084/m9.figshare.3100903
title: Wikidata Human Gender Indicators

description: This is a collection of <b>Gender Indicators</b> from Wikidata and Wikipedia of Human Biographies. Data is derived from the <b>2016-01-03 Wikidata </b>snapshot.<br><br>Each file describe the humans in Wikidata aggregated by Gender (Property:P21), and dissaggregated by the following Wikidata Properties: <br>- <b>Date of Birth </b>(P569)<br>- <b>Date of Death </b>(P570)<br>- <b>Place of Birth</b> (P19)<br>- <b>Country of Citizenship</b> (P27)<br>- <b>Ethnic Group</b> (P172)<br>- <b>Field of Work</b> (P101)<br>- <b>Occupation</b> (P106)<br>- <b>Wikipedia Language</b> ("Sitelinks") <br>Further aggregations of the data are: <br>- <b>World Map</b> (Countries derived from place of birth and citizenship)<br>- <b>World Cultures</b> (Inglehart Welzel Map applied to World Map)<br>- <b>Gender Co-Occurence</b> (Humans with multiple genders).<br><br>Wikidata labels have be <b>translated to English</b> for convenience when possible. You may still see values with "QIDs" which means there was no English translation possible. In the case where there were multiple values, such as for occupation, the we count the gender as co-occuring with each occupation separately.<br><br>For more information. http://wigi.wmflabs.org/<br>
DOI: 10.6084/m9.figshare.3100885
title: Inexact GMRES: Stokes equation

description: Figures and plotting scripts.<br>Figures 10–14 of the paper: <i>"Inexact Krylov iterations and relaxation strategies with fast-multipole boundary element method"</i><br>Submitted for peer review.<br>Fig. 10: (StokesConvergence.pdf)Convergence of the boundary-integral solution for Stokes flow around a sphere, using a first-kind equation; <i>p</i>=16, linear system solved to 10^-5 tolerance. The relative error is with respect to the analytical solution for drag on a sphere.<br>Fig. 11: (StokesResidualHistory.pdf)Residual history solving for surface traction on the surface of a sphere (first-kind integral problem), with a 10^-5 solver tolerance, 8,192 panels, and <i>p</i>=16 in the multipole expansions.<br>Fig. 12: (StokesSolveBreakdown.pdf)Time breakdown between P2P and M2L when using a relaxation strategy for solving surface traction on the surface of a sphere, 10^-5 solver tolerance, 8,192 panels, <i>p</i>=16.<br>Fig. 13: (StokesSpeedupRelaxation.pdf)Speed-up for solving first-kind Stokes equation on the surface of a sphere, varying <i>N</i>. 10^-5 solver tolerance, <i>p</i>=16.<br>Fig. 14: (StokesSpeedupTolerance.pdf)Speed-ups for solving a 1st-kind Stokes problem on a sphere discretized with 8,192 panels, as the GMRES solver's tolerance increases; <i>p</i>=16 for all cases.
DOI: 10.6084/m9.figshare.3100891
title: Inexact GMRES: Red blood cells

description: Figures and plotting scripts.<br>Figure 16, 17, 19, 20 of the paper: <i>"Inexact Krylov iterations and relaxation strategies with fast-multipole boundary element method"</i><br>Submitted for peer review.<br>Fig. 16: (EthrocyteConvergence.pdf)Observed convergence for Stokes flow around red blood cells, with respect to the extrapolated value of the drag coefficient, using Richardson extrapolation.<br>Fig. 17: (EthrocyteSingleCellIterations.pdf)Number of iterations needed for the system to converge for increasingly refined surface meshes on one red blood cell; <i>p</i> = 16, target residual 10^-5.<br>Fig. 19: (EthrocyteMultipleCellIterations.pdf)Number of iterations needed to converge to a desired residual of 10^-5 for systems with multiple red blood cells, discretized with different mesh sizes (<i>p</i> = 16).<br>Fig. 20: (EthrocyteMultipleCellSpeedup.pdf)Speed-ups of the relaxation strategy with several red blood cells in uniform Stokes flow, using different mesh sizes on each cell. The abscissa value corresponds to the total number of panels (all cells).
DOI: 10.6084/m9.figshare.3100900
title: Satellite comparison

description: multiple satellite soil moisture comparison
DOI: 10.6084/m9.figshare.3100966.v2
title: Rubin, Evans, & Wilkinson - Data Package

description: This data package contains the research survey, deidentified data set, associated SPSS syntax file, variable naming information, and additional results tables for the following research article: Rubin, M., Evans, O., & Wilkinson, R. B. (2016). A longitudinal study of the relations between university students’ subjective social status, social contact with university friends, and mental health and well-being.<i> </i><i><i>Journal of Social and Clinical Psychology.<br><br></i></i>If you are interested in analysing the data from this data set, then please contact Mark.Rubin@newcastle.edu.au to discuss the ethical issues. <br>
DOI: 10.6084/m9.figshare.3100882
title: Inexact GMRES: Laplace equation

description: Figures and plotting scripts:<br>Figures 5–9 of the paper: <i>"Inexact Krylov iterations and relaxation strategies with fast-multipole boundary element method"</i><br>Submitted for peer review.<br>Fig. 5: (LaplaceConvergence.pdf)Convergence of 1st-kind (solid line) and 2nd-kind (dotted line) solvers for the Laplace equation on a sphere, using a GMRES with FMM-accelerated matrix-vecctor products.<br>Fig. 6: (LaplaceResidualIterations.pdf)In a test using a sphere discretized with 32,768 triangles, the residual (solid line, left axis) decreases with successive GMRES iterations while the necessary <i>p</i> (open circles, right axis) to achieve convergence drops quickly.<br>Fig. 7: (LaplaceSpeedupRelaxation.pdf)Speed-up using a relaxation strategy for three different triangulations of a sphere (<i>N</i> is the number of surface panels), using 1st-kind and 2nd-kind integral formulations. (Multi-threaded evaluator running on 6 CPU cores.)<br>Fig. 8: (LaplaceRelaxationP.pdf)Timings for solving a 1st-kind Laplace integral formulation on a sphere discretized with 32,768 panels, using a relaxed GMRES with different initial values of <i>p</i>, compared with a fixed-<i>p</i> solver. The iteration count was capped at 10 for all cases. (Multi-threaded evaluator running on 6 CPU cores.)<br>Fig. 9: (LaplaceSpeedupTolerance.pdf)Speed-ups for solving a 1st-kind Laplace integral problem on a sphere discretized with 8,192 panels, as the GMRES solver's tolerance increases; <i>p</i>=10 for all cases. (Multi-threaded evaluator running on 6 CPU cores.)<br>
DOI: 10.6084/m9.figshare.3100891.v1
title: Inexact GMRES: Red blood cells

description: Figures and plotting scripts.<br>Figure 16, 17, 19, 20 of the paper: <i>"Inexact Krylov iterations and relaxation strategies with fast-multipole boundary element method"</i><br>Submitted for peer review.<br>Fig. 16: (EthrocyteConvergence.pdf)Observed convergence for Stokes flow around red blood cells, with respect to the extrapolated value of the drag coefficient, using Richardson extrapolation.<br>Fig. 17: (EthrocyteSingleCellIterations.pdf)Number of iterations needed for the system to converge for increasingly refined surface meshes on one red blood cell; <i>p</i> = 16, target residual 10^-5.<br>Fig. 19: (EthrocyteMultipleCellIterations.pdf)Number of iterations needed to converge to a desired residual of 10^-5 for systems with multiple red blood cells, discretized with different mesh sizes (<i>p</i> = 16).<br>Fig. 20: (EthrocyteMultipleCellSpeedup.pdf)Speed-ups of the relaxation strategy with several red blood cells in uniform Stokes flow, using different mesh sizes on each cell. The abscissa value corresponds to the total number of panels (all cells).
DOI: 10.6084/m9.figshare.3100900.v1
title: Satellite comparison

description: multiple satellite soil moisture comparison
DOI: 10.6084/m9.figshare.3100846
title: Custom Mascot Database

description: Database used for MASCOT search in manuscript LARVAL X-RAY IRRADIATION INFLUENCES PROTEIN EXPRESSION IN PUPAE OF THE ORIENTAL FRUIT FLY, BACTROCERA DORSALIS<br>
DOI: 10.6084/m9.figshare.3100885.v1
title: Inexact GMRES: Stokes equation

description: Figures and plotting scripts.<br>Figures 10–14 of the paper: <i>"Inexact Krylov iterations and relaxation strategies with fast-multipole boundary element method"</i><br>Submitted for peer review.<br>Fig. 10: (StokesConvergence.pdf)Convergence of the boundary-integral solution for Stokes flow around a sphere, using a first-kind equation; <i>p</i>=16, linear system solved to 10^-5 tolerance. The relative error is with respect to the analytical solution for drag on a sphere.<br>Fig. 11: (StokesResidualHistory.pdf)Residual history solving for surface traction on the surface of a sphere (first-kind integral problem), with a 10^-5 solver tolerance, 8,192 panels, and <i>p</i>=16 in the multipole expansions.<br>Fig. 12: (StokesSolveBreakdown.pdf)Time breakdown between P2P and M2L when using a relaxation strategy for solving surface traction on the surface of a sphere, 10^-5 solver tolerance, 8,192 panels, <i>p</i>=16.<br>Fig. 13: (StokesSpeedupRelaxation.pdf)Speed-up for solving first-kind Stokes equation on the surface of a sphere, varying <i>N</i>. 10^-5 solver tolerance, <i>p</i>=16.<br>Fig. 14: (StokesSpeedupTolerance.pdf)Speed-ups for solving a 1st-kind Stokes problem on a sphere discretized with 8,192 panels, as the GMRES solver's tolerance increases; <i>p</i>=16 for all cases.
DOI: 10.6084/m9.figshare.3100846.v1
title: Custom Mascot Database

description: Database used for MASCOT search in manuscript LARVAL X-RAY IRRADIATION INFLUENCES PROTEIN EXPRESSION IN PUPAE OF THE ORIENTAL FRUIT FLY, BACTROCERA DORSALIS<br>