cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3645269_d17
title: Additional file 22: Table S4. of Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe

description: tAIg values, percent optimal codons, mRNA half-lives, synthesis rates, and abundance in S. pombe. (XLS 2000 kb)
DOI: 10.6084/m9.figshare.c.3645269_d19
title: Additional file 13: Table S1. of Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe

description: Spearman's correlation coefficients and Spearman's partial correlations controlling for mRNA abundance to assess an association between codon optimality and mRNA half-lives. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3645269_d22
title: Additional file 21: Table S3. of Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe

description: tAIg values, percent optimal codons, mRNA half-lives synthesis rates, and abundance in S. cerevisiae. (XLS 3062 kb)
DOI: 10.6084/m9.figshare.c.3645275_d1
title: MOESM1 of Estimating the purebredâ  crossbred genetic correlation for uniformity of eggshell color in laying hens

description: Additional file 1. Format: se_h2v_GCV.f90; Fortran script than can be edited in Notepad, Wordpad, Context or many other editors. Fortran script for calculating standard errors of h v 2 and GCV Ve .
DOI: 10.6084/m9.figshare.c.3645281_d2
title: Additional file 1: of Evidence of functional divergence in MSP7 paralogous proteins: a molecular-evolutionary and phylogenetic analysis

description: Eighty-tree sequences from MSP7 family found in 13 Plasmodium genomes. The PlasmoDB accession numbers for msp7 genes from eight species are shown. (TXT 88 kb)
DOI: 10.6084/m9.figshare.c.3645287_d1
title: MOESM1 of Molecular epidemiological tracing of a cattle rabies outbreak lasting less than a month in Rio Grande do Sul in southern Brazil

description: Additional file 1. Primers used for RT-PCR and sequencing.
DOI: 10.6084/m9.figshare.c.3645287_d3
title: MOESM2 of Molecular epidemiological tracing of a cattle rabies outbreak lasting less than a month in Rio Grande do Sul in southern Brazil

description: Additional file 2. Nucleotide sequences RABV N gene retrieved from GenBank.
DOI: 10.6084/m9.figshare.c.3645311_d16
title: Additional file 16: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

description: Biological functions identified by IPA from differentially expressed genes list (FDR 10%) between high and low groups based on oleic acid content in Longissimus dorsi muscle of Nellore steers. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3645311_d17
title: Additional file 10: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

description: Normalized gene expression level and statistical results of differentially expressed genes analysis (FDR 10%) between High and Low groups based on conjugated linoleic acid cis9 trans11 (CLA-c9t11) content from Longissimus dorsi muscle of Nellore steers. (XLSX 15002 kb)
DOI: 10.6084/m9.figshare.c.3645311_d18
title: Additional file 13: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

description: Enriched canonical pathways of the differentially expressed genes between High and Low groups based on oleic acid content from Longissimus dorsi muscle of Nellore steers using Ingenuity Pathway Analysis (IPA). (XLS 83 kb)
DOI: 10.6084/m9.figshare.c.3645311_d19
title: Additional file 8: of Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

description: Normalized gene expression level and statistical results of differentially expressed genes analysis (FDR 10%) between High and Low groups based on palmitic acid (PA) content from Longissimus dorsi muscle of Nellore steers. (XLSX 15040 kb)
DOI: 10.15468/dl.6hkszu
title: Occurrence Download

description: A dataset containing 599 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles punctimacula Dyar & Knab, 1906"
 ]
}

 The dataset includes 599 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034020-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645326_d1
title: Additional file 1: of Colil: a database and search service for citation contexts in the life sciences domain

description: Retrieving sets of citation contexts for papers with PubMed ID 18996891, 21071411, 22135297, and 23376192. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3645356_d1
title: MOESM2 of The vaginal microbiome is stable in prepubertal and sexually mature Ellegaard GĂśttingen Minipigs throughout an estrous cycle

description: Additional file 2. Abundance of OTUs at genus level in prepubertal and sexually mature minipigs. This file shows the abundance of genera in prepubertal and sexually mature minipigs. The first spreadsheet contains the data from the prepubertal minipigs and the second spreadsheet contains data from the sexually mature minipigs.
DOI: 10.6084/m9.figshare.c.3645356_d2
title: MOESM1 of The vaginal microbiome is stable in prepubertal and sexually mature Ellegaard GĂśttingen Minipigs throughout an estrous cycle

description: Additional file 1. Abundance of OTUs at family level in individual samples in prepubertal and sexually mature minipigs. This file shows the distribution of bacterial families in the individual samples in prepubertal and sexually mature minipigs to visualize the inter-individual variation. The first spreadsheet contains the data from the prepubertal minipigs and the second spreadsheet contains data from the sexually mature minipigs.
DOI: 10.6084/m9.figshare.c.3645428_d2
title: Additional file 6: Table S2. of Genome-wide methylation profiling of ovarian cancer patient-derived xenografts treated with the demethylating agent decitabine identifies novel epigenetically regulated genes and pathways

description: Final list of the top 1029 CpG probes and their Î˛ values of DAC-treated ovarian cancer PDXs and control ones with full annotation information of probes. (XLSX 438 kb)
DOI: 10.6084/m9.figshare.c.3645437_d5
title: Additional file 4: Table S2. of Isolation, selection and culture methods to enhance clonogenicity of mouse bone marrow derived mesenchymal stromal cell precursors

description: Presenting the optical configuration and corresponding fluorochomes/dyes of the BD FACSAriaIIÂŽ cell sorter. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3645437_d6
title: Additional file 5: Table S3. of Isolation, selection and culture methods to enhance clonogenicity of mouse bone marrow derived mesenchymal stromal cell precursors

description: Presenting the sequences of quantitative RT-PCR primers used in the experiments. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3645449_d1
title: Additional file 1: of Estimated herd prevalence and sequence types of Coxiella burnetii in bulk tank milk samples from commercial dairies in Indiana

description: Sample selection, county level prevalence and sequence typing data. This table details the number of samples provided, sample proportional to size calculations, the number of samples tested by county, PHPD and region for C. burnetii and the ST of C. burnetii identified. Counties labelled with # had samples submitted for sequence typing with CTs above the cutoff for identification as positive in this study. Parke county, labelled with *, was the source of the sample that contained both ST20 and ST8. This sample is included in the total count of ST20 and ST8 in this table. Jasper county had samples submitted that were not on the initial documentation and were not included in sample size calculations based on 1385 samples. These samples were accounted for with sample size calculations based on the 1167 samples received. (XLS 44 kb)
DOI: 10.6084/m9.figshare.c.3645476_d1
title: Additional file 2: Table S1. of Unraveling the early molecular and physiological mechanisms involved in response to phenanthrene exposure

description: Transcriptome data obtained for each performed comparison. Table S2. Genes found to be differentially expressed in all the comparisons between PHN-treated and control plants (hybridizations 5–9). Table S3. Genes found to be differentially expressed in all the comparisons between PHN-treated and control plants (hybridizations 5–9), selected after ANOVA analysis. Table S4. The 467 DEGs found to be differentially expressed in all the comparisons between PHN-treated and control plants (hybridizations 5–9), selected after ANOVA analysis. Table S5. Biological pathways with significantly over-represented genes. Table S6. Primers used for quantitative RT-PCR. (XLSX 17507 kb)
DOI: 10.15468/dl.t2gn6w
title: Occurrence Download

description: A dataset containing 56287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles punctipennis (Say, 1823)"
 ]
}

 The dataset includes 56287 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034021-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645527_d11
title: Additional file 13: Table S6. of Transcriptome and metabolite profiling reveals that prolonged drought modulates the phenylpropanoid and terpenoid pathway in white grapes (Vitis vinifera L.)

description: Differentially expressed genes. Summary of differentially expressed genes (P
DOI: 10.6084/m9.figshare.c.3645527_d14
title: Additional file 8: Table S7. of Transcriptome and metabolite profiling reveals that prolonged drought modulates the phenylpropanoid and terpenoid pathway in white grapes (Vitis vinifera L.)

description: Network analysis metrics. Detailed information concerning the various metabolite/transcript annotations, correlation relationships (PCC), and statistical significance (empirical P value) are depicted for the global (C and D) metabolite-metabolite network (A) and metabolite-transcript network in C (B) and D (C). Frequency tables for the significant metabolite-transcript correlations from (B) and (C) are summarized in (D). Correlation values (PCC, statistical significance of PCC, and correlation ranks) for the predicted monoterpene (linalool, nerol, and α-terpineol)-transcript network reported in Fig. 8a (E). Contingency tables containing enriched (P
DOI: 10.5281/zenodo.14458254
title: ISAR Intermediate Representation Samples

description: This dataset contains samples of the Intermediate representation (IR) and Delta represenation generated using ISAR metholdogy opertaing on 8 open source microservices-based projects.
DOI: 10.5281/zenodo.14458255
title: ISAR Intermediate Representation Samples

description: This dataset contains samples of the Intermediate representation (IR) and Delta represenation generated using ISAR metholdogy opertaing on 8 open source microservices-based projects.
DOI: 10.6084/m9.figshare.c.3645581_d1
title: Additional file 2: of Detection of genomic signatures of recent selection in commercial broiler chickens

description: Table S2. Putative selection regions detected by XP-CLR test (XLSX 92 kb)
DOI: 10.6084/m9.figshare.c.3645581_d3
title: Additional file 5: of Detection of genomic signatures of recent selection in commercial broiler chickens

description: Table S5. Major haplotypes and their frequencies detected in the purebred lines at the high-confidence selection regions that span at least 5 SNPs in our genotype data (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3645581_d5
title: Additional file 1: of Detection of genomic signatures of recent selection in commercial broiler chickens

description: Table S1. Putative selection regions detected by XP-EHH test (XLSX 99 kb)
DOI: 10.6084/m9.figshare.c.3645581_d4
title: Additional file 3: of Detection of genomic signatures of recent selection in commercial broiler chickens

description: Table S3. Candidate selection regions detected by both XP-EHH and XP-CLR tests (XLSX 73 kb)
DOI: 10.6084/m9.figshare.c.3645581_d6
title: Additional file 7: of Detection of genomic signatures of recent selection in commercial broiler chickens

description: Table S7. Candidate selection regions on autosomes detected using ZH scores (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3645581_d7
title: Additional file 8: of Detection of genomic signatures of recent selection in commercial broiler chickens

description: Table S8. Genes in regions detected using ZH scores that overlap with previous studies (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3645581_d8
title: Additional file 4: of Detection of genomic signatures of recent selection in commercial broiler chickens

description: Table S4. High-confidence selection regions detected by both methods (XP-EHH and XP-CLR) in 2 or more populations (XLSX 41 kb)
DOI: 10.5281/zenodo.13958143
title: Raw Data for: Atomically resolved imaging of radiation-sensitive metal-organic frameworks via electron ptychography

description: Data for the Article: Atomically resolved imaging of radiation-sensitive metal-organic frameworks via electron ptychography
DOI: 10.5281/zenodo.13958144
title: Raw Data for: Atomically resolved imaging of radiation-sensitive metal-organic frameworks via electron ptychography

description: Data for the Article: Atomically resolved imaging of radiation-sensitive metal-organic frameworks via electron ptychography
DOI: 10.6084/m9.figshare.c.3645587_d3
title: Additional file 2: of Evolution and divergence of SBP-box genes in land plants

description: Summary of information on SBP-box genes from five land plant species: moss, Arabidopsis , poplar, rice and maize used in this study. (XLS 20Â kb)
DOI: 10.6084/m9.figshare.c.3645587_d4
title: Additional file 4: of Evolution and divergence of SBP-box genes in land plants

description: The detail information of predicted targets for miR156 and miR529 in five land plants used in this study. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3645590_d2
title: MOESM3 of Unbiased profiling of volatile organic compounds in the headspace of Allium plants using an in-tube extraction device

description: Additional file 3. Tentatively annotated VOCs in the HS of Allium plants collected with the ITEX device. The log2-fold change (log2FC) was calculated using the LIMMA package (see the “Methods” section). We analyzed three biological replicates of each Allium plant except for the white spring onion cultivar (class05, n = 2). The FDR was &lt;0.05. A2 tentatively identified by referring to the libraries (match value &gt;799); I identified by comparing the authentic standards.
DOI: 10.6084/m9.figshare.c.3645593_d2
title: Additional file 2: Figure S2. of A comparative gene analysis with rice identified orthologous group II HKT genes and their association with Na+ concentration in bread wheat

description: DNA Sequence alignment of the OsHKT2;1-OsHKT2;4 intergenic region (A) and TaHKT2;1-TaHKT2;2 intergenic region on 7AL, 7BL and 7DL (B). The complete sequence of PIF/Harbinger type MITE is highlighted in purple, remnants of a CACTA type transposon “DTC_Isidor” in blue and individual motifs of tandem duplications are in red, yellow, green and dark blue. Boxed sequences represent salt activated cis-acting regulatory elements and other regulatory motifs in the OsHKT2;4 and TaHKT2;2 promoter regions. (RTF 545 kb)
DOI: 10.6084/m9.figshare.c.3645596_d3
title: Additional file 3: Table S6. of Genome-wide variation in the pinewood nematode Bursaphelenchus xylophilus and its relationship with pathogenic traits

description: Distribution of proteins obtained by de novo assembly of unmapped reads in the isolates/inbred lines, including Blast2Go annotations. 1: presence/0: absence. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3645659_d1
title: Additional file 12: of Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae)

description: Coding sequences alignment between those unigenes from C. brasiliense and their corresponding Arabidopsis homologs used in RT-qPCR assays. (TXT 29 kb)
DOI: 10.6084/m9.figshare.c.3645659_d4
title: Additional file 5: of Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae)

description: Coding sequences alignment between PAL-like C. brasiliense unigenes and Arabidopsis PAL1 protein. (TXT 8 kb)
DOI: 10.6084/m9.figshare.c.3645659_d3
title: Additional file 2: Table S1. of Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae)

description: Annotation of C. brasiliense unigenes. (XLSX 20582 kb)
DOI: 10.6084/m9.figshare.c.3645659_d5
title: Additional file 10: of Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae)

description: Coding sequences alignment between PT-like unigenes from C. brasiliense and Petroselinum crispum PT protein. (TXT 9 kb)
DOI: 10.6084/m9.figshare.c.3645659_d6
title: Additional file 7: of Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae)

description: Coding sequences alignment between C4H-like C. brasiliense and Arabidopsis C4H protein. (TXT 6 kb)
DOI: 10.6084/m9.figshare.c.3645659_d7
title: Additional file 8: of Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae)

description: Coding sequences alignment between C. brasiliense and Arabidopsis 4CL proteins. (TXT 18 kb)
DOI: 10.6084/m9.figshare.c.3645659_d8
title: Additional file 1: of Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae)

description: C. brasiliense unigenes set. (TXT 68107 kb)
DOI: 10.6084/m9.figshare.c.3645659_d9
title: Additional file 4: Tables S2-S9. of Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae)

description: Table S2: Functional classification of C. brasiliense unigenes set based on Arabidopsis GO annotation. Table S3: Expression profile matrix of C. brasiliense unigenes. Table S4: Preferentially expressed genes in the organs sampled (leaves, stem and roots) of C. brasiliense. Table S5: Functional classification of preferentially expressed genes. Table S6: Number of preferentially expressed genes associated to specific GO terms. Table S7: Over-represented biological processes in specific organs. Table S8: Matrix of the percentage identities between the aligned cytochrome P450. Table S9: Primers used in RT-qPCR assays. (XLSX 16223 kb)
DOI: 10.6084/m9.figshare.c.3645659_d10
title: Additional file 6: of Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae)

description: Coding sequences alignment between C. brasiliense and Arabidopsis PAL proteins. (TXT 16 kb)
DOI: 10.6084/m9.figshare.c.3645659_d11
title: Additional file 9: of Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae)

description: Coding sequences alignment between unigene UN02124 of C. brasiliense and Ruta graveolens CYP98A22 protein. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3645659_d12
title: Additional file 11: of Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae)

description: Coding sequences alignment between CYP-like unigenes from C. brasiliense and CYP proteins from different plant species involved in furanocoumarins biosynthesis. (TXT 74 kb)
DOI: 10.15468/dl.bbt3jc
title: Occurrence Download

description: A dataset containing 39061 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles quadrimaculatus Say, 1824"
 ]
}

 The dataset includes 39061 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034022-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645695_d4
title: Additional file 3: of Designing string-of-beads vaccines with optimal spacers

description: Detailed results for comparing epitope pairs with and without spacers. Detailed results for the comparison of epitope pairs with spacers and without spacers including sequences of the paired epitopes and designed spacers, predicted cleavage likelihoods of the two induced cleavage sites, and the combined cleavage likelihood, as well as the neo-immunogenicity of the epitope pairâ  spacer construct. (XLS 1236 kb)
DOI: 10.6084/m9.figshare.c.3645695_d7
title: Additional file 5: of Designing string-of-beads vaccines with optimal spacers

description: Detailed prediction results for the polypeptide proposed by Levy et al. Detailed results of the neo-epitope and cleavage site prediction analysis performed with PCM for cleavage site prediction, and with SYFPEITHI, BIMAS, and SMM for neo-epitope prediction for the polypeptide of Levy et al. (XLS 76 kb)
DOI: 10.6084/m9.figshare.c.3645695_d8
title: Additional file 8: of Designing string-of-beads vaccines with optimal spacers

description: Detailed prediction results of the polypeptide proposed by Ding et al. Detailed results of the neo-epitope and cleavage site prediction analysis performed with SYFPEITHI and PCM on the polypeptide of Ding et al. (XLS 43 kb)
DOI: 10.15468/dl.rp65bp
title: Occurrence Download

description: A dataset containing 274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles rufipes (Gough, 1910)"
 ]
}

 The dataset includes 274 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034023-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645731_d2
title: Additional file 1: Figure S1. of CD80 down-regulation is associated to aberrant DNA methylation in non-inflammatory colon carcinogenesis

description: MSP analysis. Representative results of methylation-specific PCR of APC, CDH13, MGMT, MLH1 and RUNX3 in colorectal mucosa specimen. The presence of a visible PCR product indicates the presence of unmethylated and methylated genes as shown; the EpiTect PCR Control DNA Set (Qiagen) was used as the positive control (+) for the methylated and unmethylated genes. (ZIP 1770Â kb)
DOI: 10.6084/m9.figshare.c.3645737_d2
title: Additional file 3: of Unsolved challenges of clinical whole-exome sequencing: a systematic literature review of end-users’ views

description: Full articles dataset. (XLSX 628 kb)
DOI: 10.6084/m9.figshare.c.3645740_d1
title: Additional file 1: of Which level is responsible for gluteal pain in lumbar disc hernia?

description: LDH_GP.sav. (SAV 31 kb)