cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14455/isec.res.2018.137
title: ULTIMATE SLIP STRENGTH OF PERFOBOND STRIP CONFINED BY CONCRETE COVER

description: The ultimate slip strength of a perfobond strip (called "PBL" hereafter) depends significantly on the concrete confinement conditions around PBL hole as well as concrete shear fractures at the hole. If the hole is small, the effect of concrete confinement will still more strongly appear. In this paper, focusing on the concrete confinement due to concrete cover, the ultimate slip strength of PBL with a small hole is investigated experimentally through push-out tests, in which the diameter of PBL hole is set at 30 mm and the thickness of the concrete cover is varied from 0 to 100 mm. Test results show that the concrete separates into two blocks with concrete crack parallel to the PBL plate and that the ultimate slip strength of a 50-mm-thick concrete cover is 34.4 kN, which is about 10 times of the slip strength without concrete cover (3.5 kN). Thus, it can be concluded that thicker concrete cover makes the slip strength remarkably larger, in the case of small-hole PBLs.
DOI: 10.14455/isec.res.2018.138
title: UNBURNT CARBON REMOVED FROM FLY ASH BY FLOTATION METHOD

description: Because fly ash has pozzolanic activity, it has been used for a long time as an admixture for concrete. However, unburnt carbon in the fly ash adversely affects the fresh properties of concrete. For this reason, when fly ash having a high unburnt carbon content is used as an admixture for concrete, it is desired to reduce the amount of unburnt carbon. So far, at our university, we have developed a technique to remove unburnt carbon by flotation method. It is necessary to add a scavenger and a foaming agent when using this equipment. However, the appropriate amount is unknown. Therefore, we investigated a method to easily estimate the amount of chemicals suitable for flotation treatment from the physical properties of raw fly ash. It is obvious that efficient treatment can be performed when the addition amount of scavenger and the addition amount of foaming agent is set to 10: 1, and that the addition amount of the agent can be accurately estimated by using the methylene blue adsorption amount of fly ash.
DOI: 10.14455/isec.res.2018.139
title: Utilizing Plastic for Pretreating Recycled Construction Aggregate to Eliminate Binder Absorption in Asphalt Mixture

description: The growing quantities of waste materials, lack of natural resources and shortage of landfill spaces represent the importance of finding innovative ways of reusing and recycling waste materials. Due to the large quantities of construction and demolition waste (CDW), recycling and utilization of Recycled Construction Aggregates (RCA) obtained from CDW in construction projects, including asphalt pavement construction, can be the most promising solution to this problem. Asphalt mixtures containing RCA have the problem of high bitumen absorption. Using plastic waste in RCA-contained asphalt mixtures reduces not only bitumen absorption but also the adverse environmental impacts associated with plastic waste disposal due to the nonbiodegradability of plastic waste. In addition, the demand reduction for virgin aggregates is another advantage resulting in subsequent economic advantages. This paper characterizes the effects of different types of plastic on the bitumen absorption and properties of asphalt mixtures containing RCA through laboratory investigation. Different types of plastic including High-Density Polyethylene (HDPE) and LowDensity Polyethylene (LDPE) were investigated in this research. The test results indicate that the plastic waste can be a viable material for improving the problem of high bitumen absorption of asphalt mixtures containing RCA.
DOI: 10.7910/dvn/l6c4dk/1bt0x0
title: 113-1_0214.dcm
DOI: 10.7910/dvn/l6c4dk/1vmktk
title: 113-1_0223.dcm
DOI: 10.7910/dvn/l6c4dk/dhfd26
title: 113-5_0169.dcm
DOI: 10.7910/dvn/l6c4dk/dqxths
title: 113-1_0068.dcm
DOI: 10.7910/dvn/l6c4dk/i6glw0
title: 113-5_0008.dcm
DOI: 10.7910/dvn/l6c4dk/jnovdr
title: 113-1_0090.dcm
DOI: 10.7910/dvn/l6c4dk/wewimi
title: 113-5_0074.dcm
DOI: 10.7910/dvn/l6c4dk/wztp21
title: 113-5_0147.dcm
DOI: 10.7910/dvn/l6c4dk/x7v25t
title: 113-1_0121.dcm
DOI: 10.14455/isec.res.2018.140
title: YIELD STRESS BASED ON NATURAL STRAIN THEORY UNDER CYCLIC TENSION-COMPRESSION LOAD AFTER LARGE SIMPLE SHEAR

description: Many researches on the yield behavior under cyclic loads have been conducted for many years. However, almost these studies have been done within the range of relatively small size deformation. Hence, the detailed studies for yield phenomenon under cyclic loads after applying a large pre-deformation have not been sufficiently elucidated. Therefore, in the series of our studies, using test pieces of high purity tough pitch copper, the yield behavior generated under cyclic loads after applying the predeformation of large uniaxial tension or large simple shear have been investigated. However, as for the case that the type of pre-deformation differs from the type of deformation in the cyclic load, detailed studies have not been conducted yet. Hence, in the present study, the yield behavior generated under cyclic loads for tension and compression after applying a large pre-deformation of simple shear is examined based on Natural Strain theory. Furthermore, experimental results in the present study are compared with results of previous studies concerning cyclic loads for tension and compression after applying the large uniaxial tension. Consequently, it is revealed that the decreasing tendency of yield stress at the compression side appears more strongly as compared with the experimental result by previous study that the pre-deformity is a uniaxial tension.
DOI: 10.7910/dvn/l6c4dk/a5fusn
title: 113-1_0009.dcm
DOI: 10.7910/dvn/l6c4dk/ci1y9o
title: 113-5_0213.dcm
DOI: 10.7910/dvn/l6c4dk/djmlno
title: 113-5_0211.dcm
DOI: 10.7910/dvn/l6c4dk/gyxix9
title: 113-1_0057.dcm
DOI: 10.7910/dvn/l6c4dk/hde4lb
title: 113-5_0058.dcm
DOI: 10.7910/dvn/l6c4dk/mtnoey
title: 113-1_0007.dcm
DOI: 10.7910/dvn/l6c4dk/n9bomj
title: 113-1_0174.dcm
DOI: 10.7910/dvn/l6c4dk/pvbpgt
title: 113-1_0196.dcm
DOI: 10.7910/dvn/l6c4dk/qu7zua
title: 113-5_0116.dcm
DOI: 10.25919/5bda83728aa06
title: Laying hen attention bias test data

description: Data for application of an attention bias test in free-range laying hens including pharmacological validation of the test using the anxiogenic drug m-CPP.
DOI: 10.5281/zenodo.1323343
title: Raw Experimental Data For Work Presented In 'Leveraging Chaos For Wave-Based Analog Computation: Demonstration With Indoor Wireless Communication Signals'

description: This is the raw experimental data for the work presented in 'Leveraging Chaos for Wave-Based Analog Computation: Demonstration with Indoor Wireless Communication Signals', to be published in Physical Review X.

 

https://journals.aps.org/prx/accepted/dc07aKdcFa91ea06d2949139dac733fa62ce1c02c

 

See the README files and sample pieces of codes for an explanation of the data.
DOI: 10.5281/zenodo.1323344
title: Raw Experimental Data For Work Presented In 'Leveraging Chaos For Wave-Based Analog Computation: Demonstration With Indoor Wireless Communication Signals'

description: This is the raw experimental data for the work presented in 'Leveraging Chaos for Wave-Based Analog Computation: Demonstration with Indoor Wireless Communication Signals', to be published in Physical Review X.

 

https://journals.aps.org/prx/accepted/dc07aKdcFa91ea06d2949139dac733fa62ce1c02c

 

See the README files and sample pieces of codes for an explanation of the data.
DOI: 10.7910/dvn/l6c4dk/4vadhi
title: 113-1_0160.dcm
DOI: 10.7910/dvn/l6c4dk/cwovpj
title: 113-5_0055.dcm
DOI: 10.7910/dvn/l6c4dk/fgr5y4
title: 113-5_0101.dcm
DOI: 10.7910/dvn/l6c4dk/ghs8oo
title: 113-1_0179.dcm
DOI: 10.7910/dvn/l6c4dk/jqqlnr
title: 113-5_0233.dcm
DOI: 10.7910/dvn/l6c4dk/lobr3g
title: 113-5_0247.dcm
DOI: 10.7910/dvn/l6c4dk/totbnc
title: 113-5_0191.dcm
DOI: 10.7910/dvn/l6c4dk/zzbybx
title: 113-5_0032.dcm
DOI: 10.7910/dvn/l6c4dk/bjheek
title: 113-5_0180.dcm
DOI: 10.7910/dvn/l6c4dk/bntplj
title: 113-1_0021.dcm
DOI: 10.7910/dvn/l6c4dk/de6xhn
title: 113-5_0146.dcm
DOI: 10.7910/dvn/l6c4dk/jvihti
title: 113-5_0118.dcm
DOI: 10.7910/dvn/l6c4dk/pfzugc
title: 113-1_0142.dcm
DOI: 10.7910/dvn/l6c4dk/s4rvwk
title: 113-5_0231.dcm
DOI: 10.7910/dvn/l6c4dk/xmbueu
title: 113-1_0248.dcm
DOI: 10.7910/dvn/l6c4dk/yqahml
title: 113-1_0249.dcm
DOI: 10.7910/dvn/l6c4dk/z2u5et
title: 113-5_0232.dcm
DOI: 10.7910/dvn/l6c4dk/bsgfpv
title: 113-5_0065.dcm
DOI: 10.7910/dvn/l6c4dk/ck1jj6
title: 113-5_0016.dcm
DOI: 10.7910/dvn/l6c4dk/iqcv98
title: 113-1_0233.dcm
DOI: 10.7910/dvn/l6c4dk/kgmvoi
title: 113-1_0204.dcm
DOI: 10.7910/dvn/l6c4dk/mzp1z6
title: 113-1_0030.dcm
DOI: 10.7910/dvn/l6c4dk/ocvxd1
title: 113-1_0194.dcm
DOI: 10.7910/dvn/l6c4dk/xh549o
title: 113-1_0112.dcm
DOI: 10.7910/dvn/l6c4dk/zgqskp
title: 113-5_0098.dcm
DOI: 10.5281/zenodo.1475090
title: Historic Caddo Network Analysis Data

description: Ceramic and lithic types and counts used in the Historic Caddo network analysis for northeast Texas. This dataset is incomplete, and does not include the site locations used to plot the network.
DOI: 10.5281/zenodo.1475091
title: Historic Caddo Network Analysis Data

description: Ceramic and lithic types and counts used in the Historic Caddo network analysis for northeast Texas. This dataset is incomplete, and does not include the site locations used to plot the network.
DOI: 10.5281/zenodo.1475852
title: Acvr1 1.25 Å And 2 Å Datasets For M4K2117 And M4K2121

description: Autoprocessed .mtz files for ACVR1 bound to M4K2117 and M4K2121
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada, Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA Darmstadt Germany, MSD, Novartis Pharma AG, Ontario Ministry of Economic Development and Innovation, Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome [106169/ZZ14/Z].
DOI: 10.7910/dvn/l6c4dk/1lgz7l
title: 113-1_0029.dcm
DOI: 10.7910/dvn/l6c4dk/25sxb3
title: 113-5_0030.dcm
DOI: 10.7910/dvn/l6c4dk/aq1tur
title: 113-1_0045.dcm
DOI: 10.7910/dvn/l6c4dk/fswebq
title: 113-1_0239.dcm
DOI: 10.7910/dvn/l6c4dk/hkluyr
title: 113-1_0140.dcm
DOI: 10.7910/dvn/l6c4dk/olaq4h
title: 113-5_0155.dcm
DOI: 10.7910/dvn/l6c4dk/pnacek
title: 113-1_0173.dcm
DOI: 10.7910/dvn/l6c4dk/wdajbi
title: 113-5_0050.dcm
DOI: 10.7910/dvn/l6c4dk/xs3zky
title: 113-5_0069.dcm
DOI: 10.17632/n3wr9ds58j.1
title: Data for: Cenozoic deformation history of the Qilian Shan (northeastern Tibetan Plateau) constrained by detrital apatite fission-track thermochronology in the northeastern Qaidam Basin

description: Single-grain apatite fission track ages and required parameter values for samples in this study.
DOI: 10.5258/soton/d0687
title: Dataset for Adaptive Coherent/Non-Coherent Single/Multiple-Antenna Aided Channel Coded Ground-to-Air Aeronautical Communication

description: This dataset supports the paper:
C. Xu, J. Zhang, T. Bai, P. Botsinis, R.G. Maunder, R. Zhang and L. Hanzo (2018) Adaptive Coherent/Non-Coherent Single/Multiple-Antenna Aided Channel Coded Ground-to-Air Aeronautical Communication. IEEE Transactions on Communications.Xfig in Linus system is the program required for this data.
DOI: 10.5281/zenodo.1475851
title: Acvr1 1.25 Å And 2 Å Datasets For M4K2117 And M4K2121

description: Autoprocessed .mtz files for ACVR1 bound to M4K2117 and M4K2121
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada, Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA Darmstadt Germany, MSD, Novartis Pharma AG, Ontario Ministry of Economic Development and Innovation, Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome [106169/ZZ14/Z].
DOI: 10.7910/dvn/l6c4dk/2bhx94
title: 113-1_0243.dcm
DOI: 10.7910/dvn/l6c4dk/5b3kv6
title: 113-5_0205.dcm
DOI: 10.7910/dvn/l6c4dk/bijhdz
title: 113-5_0198.dcm
DOI: 10.7910/dvn/l6c4dk/bmg1gu
title: 113-5_0214.dcm
DOI: 10.7910/dvn/l6c4dk/d8elql
title: 113-5_0071.dcm
DOI: 10.7910/dvn/l6c4dk/n0pex1
title: 113-5_0010.dcm
DOI: 10.7910/dvn/l6c4dk/puuqsw
title: 113-1_0182.dcm
DOI: 10.7910/dvn/l6c4dk/qwxmv7
title: 113-5_0203.dcm
DOI: 10.7910/dvn/l6c4dk/rmirkp
title: 113-5_0132.dcm
DOI: 10.7910/dvn/l6c4dk/tffs5a
title: 113-1_0126.dcm
DOI: 10.7910/dvn/l6c4dk/ux58tp
title: 113-5_0179.dcm
DOI: 10.7910/dvn/l6c4dk/vjdnhw
title: 113-1_0103.dcm
DOI: 10.5281/zenodo.1475842
title: Intelligentnfvautoscaler

description: Modio's FED4FIRE+ experiment IntelligentNFVAutoscaler: Performance results from different autoscalers.
DOI: 10.5281/zenodo.1475843
title: Intelligentnfvautoscaler

description: Modio's FED4FIRE+ experiment IntelligentNFVAutoscaler: Performance results from different autoscalers.
DOI: 10.7910/dvn/l6c4dk/6xm7yh
title: 113-5_0150.dcm
DOI: 10.7910/dvn/l6c4dk/au14al
title: 113-1_0117.dcm
DOI: 10.7910/dvn/l6c4dk/bailhc
title: 113-5_0194.dcm
DOI: 10.7910/dvn/l6c4dk/bfi48y
title: 113-5_0091.dcm
DOI: 10.7910/dvn/l6c4dk/chfkl0
title: 113-5_0097.dcm
DOI: 10.7910/dvn/l6c4dk/fexino
title: 113-1_0130.dcm
DOI: 10.7910/dvn/l6c4dk/hqsivz
title: 113-1_0210.dcm
DOI: 10.7910/dvn/l6c4dk/kemooy
title: 113-1_0018.dcm
DOI: 10.7910/dvn/l6c4dk/lami2v
title: 113-5_0173.dcm
DOI: 10.7910/dvn/l6c4dk/rvk39r
title: 113-5_0172.dcm
DOI: 10.7910/dvn/l6c4dk/tpdmew
title: 113-5_0124.dcm
DOI: 10.7910/dvn/l6c4dk/vnfnzd
title: 113-1_0122.dcm
DOI: 10.7910/dvn/l6c4dk/vyby8a
title: 113-1_0131.dcm
DOI: 10.7910/dvn/l6c4dk/xkiap1
title: 113-1_0152.dcm
DOI: 10.7910/dvn/l6c4dk/1xj3ho
title: 113-5_0025.dcm
DOI: 10.7910/dvn/l6c4dk/9fsjqd
title: 113-5_0001.dcm
DOI: 10.7910/dvn/l6c4dk/9grv2a
title: 113-1_0036.dcm
DOI: 10.7910/dvn/l6c4dk/bs3zyd
title: 113-5_0242.dcm
DOI: 10.7910/dvn/l6c4dk/k7v6zm
title: 113-1_0062.dcm
DOI: 10.7910/dvn/l6c4dk/lbebnw
title: 113-5_0047.dcm
DOI: 10.7910/dvn/l6c4dk/lw4tdv
title: 113-5_0181.dcm
DOI: 10.7910/dvn/l6c4dk/mhu3js
title: 113-5_0015.dcm
DOI: 10.7910/dvn/l6c4dk/mmdfv4
title: 113-5_0096.dcm
DOI: 10.7910/dvn/l6c4dk/mp3h3h
title: 113-1_0017.dcm
DOI: 10.7910/dvn/l6c4dk/n6wscv
title: 113-5_0076.dcm
DOI: 10.7910/dvn/l6c4dk/onllty
title: 113-1_0019.dcm
DOI: 10.7910/dvn/l6c4dk/rwvfph
title: 113-5_0158.dcm
DOI: 10.7910/dvn/l6c4dk/tsthbo
title: 113-1_0246.dcm
DOI: 10.7910/dvn/l6c4dk/tzmblj
title: 113-1_0043.dcm
DOI: 10.7910/dvn/l6c4dk/vjvtx7
title: 113-1_0195.dcm
DOI: 10.7910/dvn/l6c4dk/xplnea
title: 113-5_0079.dcm
DOI: 10.7910/dvn/l6c4dk/xws9zt
title: 113-1_0139.dcm
DOI: 10.5255/ukda-sn-853388
title: Enacting freshness in the UK and Portuguese agri-food sectors 2017
DOI: 10.5281/zenodo.1476153
title: Intelligentnfvautoscaler

description: Modio's FED4FIRE+ experiment IntelligentNFVAutoscaler: Performance results from different autoscalers.
DOI: 10.5281/zenodo.1476154
title: Intelligentnfvautoscaler

description: Modio's FED4FIRE+ experiment IntelligentNFVAutoscaler: Performance results from different autoscalers.
DOI: 10.5523/bris.1whkrkaw7gibs2t786d7mbqcw8
title: Wavelength-dependent variations of the electron characteristics in laser-induced plasmas: a combined hydrodynamic and adiabatic expansion modelling and time-gated, optical emission imaging study  (10-2018)

description: Experimental diagnosis and modelling of plasmas formed during pulsed laser ablation of solid targets
DOI: 10.7910/dvn/l6c4dk/7cxss8
title: 113-1_0061.dcm
DOI: 10.7910/dvn/l6c4dk/bv7jdp
title: 113-1_0116.dcm
DOI: 10.7910/dvn/l6c4dk/cgu941
title: 113-1_0039.dcm
DOI: 10.7910/dvn/l6c4dk/d6byzi
title: 113-5_0117.dcm
DOI: 10.7910/dvn/l6c4dk/dlio2y
title: 113-5_0152.dcm
DOI: 10.7910/dvn/l6c4dk/doveci
title: 113-1_0086.dcm
DOI: 10.7910/dvn/l6c4dk/fyfima
title: 113-1_0108.dcm
DOI: 10.7910/dvn/l6c4dk/mi9aed
title: 113-1_0034.dcm
DOI: 10.7910/dvn/l6c4dk/nqcpzl
title: 113-5_0060.dcm
DOI: 10.7910/dvn/l6c4dk/p4dr5a
title: 113-1_0066.dcm
DOI: 10.7910/dvn/l6c4dk/rn1nij
title: 113-5_0114.dcm
DOI: 10.7910/dvn/l6c4dk/sz4lti
title: 113-5_0175.dcm
DOI: 10.7910/dvn/l6c4dk/u7z5dy
title: 113-1_0224.dcm
DOI: 10.7910/dvn/l6c4dk/zc4bzb
title: 113-1_0167.dcm
DOI: 10.7910/dvn/l6c4dk/zigybd
title: 113-5_0236.dcm
DOI: 10.5281/zenodo.1476112
title: Confocal Fluorescence Microscopy Images Of The Lacuno-Canalicular Network In Bone Femoral Diaphysis Of Mice From The Bionm1 Project (Space Flight)

description: This data set provides complementary measurements to a separate THG data set of the same study: doi: 10.5281/zenodo.1475906

Data set for 1 sample of each of the 3 groups: Control, Space Flight and Synchro (ground control with space flight housing and feeding conditions). Contains confocal fluorescence microscopy images in tif format of 2D mosaic of selected samples and 3D stacks in selected anatomical regions of interest. See readme file for more information.
description: {"references": ["Gerbaix M, Gnyubkin V, Farlay D, Olivier C, Ammann P, Courbon G, et al. One-month spaceflight compromises the bone microstructure, tissue-level mechanical properties, osteocyte survival and lacunae volume in mature mice skeletons. Scientific reports. 2017;7(1):2659. doi:10.1038/s41598-017-03014-2."]}
DOI: 10.5281/zenodo.1476113
title: Confocal Fluorescence Microscopy Images Of The Lacuno-Canalicular Network In Bone Femoral Diaphysis Of Mice From The Bionm1 Project (Space Flight)

description: This data set provides complementary measurements to a separate THG data set of the same study: doi: 10.5281/zenodo.1475906

Data set for 1 sample of each of the 3 groups: Control, Space Flight and Synchro (ground control with space flight housing and feeding conditions). Contains confocal fluorescence microscopy images in tif format of 2D mosaic of selected samples and 3D stacks in selected anatomical regions of interest. See readme file for more information.
description: {"references": ["Gerbaix M, Gnyubkin V, Farlay D, Olivier C, Ammann P, Courbon G, et al. One-month spaceflight compromises the bone microstructure, tissue-level mechanical properties, osteocyte survival and lacunae volume in mature mice skeletons. Scientific reports. 2017;7(1):2659. doi:10.1038/s41598-017-03014-2."]}
DOI: 10.7910/dvn/l6c4dk/4j08hs
title: 113-5_0199.dcm
DOI: 10.7910/dvn/l6c4dk/67imwo
title: 113-5_0108.dcm
DOI: 10.7910/dvn/l6c4dk/7g2zen
title: 113-1_0199.dcm
DOI: 10.7910/dvn/l6c4dk/8tiqxb
title: 113-5_0164.dcm
DOI: 10.7910/dvn/l6c4dk/cxewuz
title: 113-1_0206.dcm
DOI: 10.7910/dvn/l6c4dk/dyeen6
title: 113-5_0162.dcm
DOI: 10.7910/dvn/l6c4dk/heaab1
title: 113-5_0215.dcm
DOI: 10.7910/dvn/l6c4dk/hthp8d
title: 113-5_0103.dcm
DOI: 10.7910/dvn/l6c4dk/nnxiym
title: 113-1_0110.dcm
DOI: 10.7910/dvn/l6c4dk/sgcq34
title: 113-5_0115.dcm
DOI: 10.7910/dvn/l6c4dk/soy9yx
title: 113-1_0055.dcm
DOI: 10.7910/dvn/l6c4dk/whplg4
title: 113-5_0083.dcm
DOI: 10.7910/dvn/l6c4dk/x9aeqp
title: 113-5_0133.dcm
DOI: 10.7910/dvn/l6c4dk/ycjrhw
title: 113-5_0216.dcm
DOI: 10.7910/dvn/l6c4dk/zr7o6r
title: 113-1_0000.dcm
DOI: 10.5281/zenodo.1473742
title: Spaligner: Alignment Of Long Error-Prone Reads To Assembly Graphs

description: This repository contains benchmarking datasets and scripts for the manuscript "SPAligner: alignment of long error-prone reads to assembly graphs". 

Graph representation of genome assemblies has been recently used in different applications — from gene finding to haplotype separation. While many of these applications are based on aligning DNA and protein sequences to assembly graphs, existing software tools for finding such alignments have important limitations. We present a novel SPAligner (Saint Petersburg Aligner) tool for aligning long reads to assembly graphs and demonstrate that it generates accurate alignments.
DOI: 10.5281/zenodo.1473743
title: Spaligner: Alignment Of Long Error-Prone Reads To Assembly Graphs

description: This repository contains benchmarking datasets and scripts for the manuscript "SPAligner: alignment of long error-prone reads to assembly graphs". 

Graph representation of genome assemblies has been recently used in different applications — from gene finding to haplotype separation. While many of these applications are based on aligning DNA and protein sequences to assembly graphs, existing software tools for finding such alignments have important limitations. We present a novel SPAligner (Saint Petersburg Aligner) tool for aligning long reads to assembly graphs and demonstrate that it generates accurate alignments.
DOI: 10.7910/dvn/l6c4dk/5z0tbb
title: 113-5_0105.dcm
DOI: 10.7910/dvn/l6c4dk/78gm6b
title: 113-1_0165.dcm
DOI: 10.7910/dvn/l6c4dk/awk6w8
title: 113-5_0042.dcm
DOI: 10.7910/dvn/l6c4dk/craiqq
title: 113-1_0081.dcm
DOI: 10.7910/dvn/l6c4dk/f4xrgc
title: 113-1_0135.dcm
DOI: 10.7910/dvn/l6c4dk/gaud8e
title: 113-5_0048.dcm
DOI: 10.7910/dvn/l6c4dk/iqursr
title: 113-1_0198.dcm
DOI: 10.7910/dvn/l6c4dk/kpgu56
title: 113-1_0050.dcm
DOI: 10.7910/dvn/l6c4dk/kzyelt
title: 113-5_0142.dcm
DOI: 10.7910/dvn/l6c4dk/lb6zry
title: 113-1_0146.dcm
DOI: 10.7910/dvn/l6c4dk/ly5n76
title: 113-5_0034.dcm
DOI: 10.7910/dvn/l6c4dk/m5rouj
title: 113-5_0245.dcm
DOI: 10.7910/dvn/l6c4dk/pcgtwt
title: 113-1_0115.dcm
DOI: 10.7910/dvn/l6c4dk/qmc2g6
title: 113-1_0033.dcm
DOI: 10.7910/dvn/l6c4dk/u05zau
title: 113-5_0206.dcm
DOI: 10.7910/dvn/l6c4dk/wnnkgr
title: 113-1_0082.dcm
DOI: 10.7910/dvn/l6c4dk/xhu8so
title: 113-1_0087.dcm
DOI: 10.25952/5bda8ca8e3325
title: Biting mechanics determines craniofacial morphology among extant diprotodont herbivores: Dietary predictions for the giant extinct short-faced kangaroo, Simosthenurus occidentalis.

description: Larger herbivores can act as keystone species which strongly influence their communities. During the Pliocene and Pleistocene, Australia was dominated by a number of large to gigantic marsupial herbivore taxa. Many of these have been understudied quantitatively with regards to their ecology; and identifying the diet of these species will improve our understanding of not only their ecologies, but also of past environments. Recent research has found that cranial morphology among kangaroos and wallabies corresponds with foraging behaviours and mechanical properties of preferred plant tissues. Here we apply shape analysis and computational biomechanics to test two hypotheses: that feeding ecology is associated with craniofacial morphology across a taxonomically broad sample of diprotodont herbivores, and that this association can then be used to predict the diet of an extinct short-faced kangaroo, Simosthenurus occidentalis. We find that biting behaviours are reflected in craniofacial morphology for all medium-large extant marsupial herbivores studied, but that these are more a reflection of the hardest bites required for their lifestyle, rather than diet composition alone. A combination of a very short face, robust musculoskeletal features, and dental arrangements predict that S. occidentalis was a browser, capable of consuming particularly resistant, bulky plant matter. These features were largely conserved among other short-faced kangaroos and may have offset the unpredictable availability of quality forage during the climatically variable Pleistocene epoch; contributing to their prolific diversification during this time.
DOI: 10.7910/dvn/l6c4dk/8mfaaw
title: 113-1_0044.dcm
DOI: 10.7910/dvn/l6c4dk/avqepw
title: 113-5_0230.dcm
DOI: 10.7910/dvn/l6c4dk/bi4nrq
title: 113-5_0159.dcm
DOI: 10.7910/dvn/l6c4dk/ec3nx2
title: 113-1_0229.dcm
DOI: 10.7910/dvn/l6c4dk/faj2m5
title: 113-1_0125.dcm
DOI: 10.7910/dvn/l6c4dk/hrd8qm
title: 113-5_0049.dcm
DOI: 10.7910/dvn/l6c4dk/hv9az5
title: 113-1_0051.dcm
DOI: 10.7910/dvn/l6c4dk/iony2i
title: 113-5_0153.dcm
DOI: 10.7910/dvn/l6c4dk/kzmmgb
title: 113-5_0090.dcm
DOI: 10.7910/dvn/l6c4dk/ljjatd
title: 113-5_0021.dcm
DOI: 10.7910/dvn/l6c4dk/q9rrrm
title: 113-5_0099.dcm
DOI: 10.7910/dvn/l6c4dk/rfkltf
title: 113-5_0202.dcm
DOI: 10.7910/dvn/l6c4dk/sgwtxp
title: 113-1_0032.dcm
DOI: 10.7910/dvn/l6c4dk/swpfuw
title: 113-5_0178.dcm
DOI: 10.7910/dvn/l6c4dk/uolkw4
title: 113-5_0219.dcm
DOI: 10.7910/dvn/l6c4dk/vrqhkf
title: 113-1_0138.dcm