cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4810816.v1
title: Context, Continuity, Correspondence, and Continental Connections: New Approaches to the Ironwork Hoards of Roman Britain

description: For over forty years the study of Roman ironwork hoards in Britain has been defined by a single study by Manning (1972). This article summarizes the wealth of advances made since that publication regarding the distribution, context, and contents of these hoards, highlighting how these alter our understanding of them as a continuation of Iron Age practices. Furthermore, by looking at British hoards at a European level for the first time, we see that British and Continental hoards are closely related. Using Correspondence Analysis to produce new groupings based on content, which crosscut those proposed by Manning (1972) based on distribution, the article provides the first analysis of the entire contents of these hoards. Finally, a discussion of hoard contents is used to examine the potential significance of the artefacts deposited.
DOI: 10.6084/m9.figshare.4810867.v2
title: Whole-genome bacterial classification: Whole genome taxonomic reclassification and a universal prokaryotic identifier scheme

description: Poster No. 577 from the Microbiology Society Annual Conference, 2017, at EICC Edinburgh
DOI: 10.6084/m9.figshare.4810798.v1
title: Camera-trapping and seed-labelling reveals widespread granivory and scatter-hoarding of nuts by rodents in the Fynbos Biome

description: Many plant–animal interactions can be challenging to directly observe, due to species being small, cryptic and/or nocturnal. Previous research on seed predation and dispersal by rodents in the Fynbos Biome of South Africa has relied on indirect evidence, as methods for directly monitoring rodent–seed interactions were not available. The aims of the study were to determine which resident small mammals scatter-hoard nuts and the geographic, seasonal and taxonomic extent of scatter-hoarding in the Fynbos Biome. We used camera traps focused on seed stations at eight sites in the Fynbos Biome to determine the responses of small mammals to tagged nut-like fruits (nuts) of seven endemic plant species belonging to the Proteaceae (<i>n</i> = 3), Rosaceae (<i>n</i> = 2), Restionaceae (<i>n</i> = 1) and Cupressaceae (<i>n</i> = 1), as well as commercial sunflower seeds. We found <i>Acomys subspinosus</i> and <i>Gerbilliscus paeba</i> scatter-hoarded nuts, which they typically carried and buried individually. <i>Rhabdomys pumilio</i> and <i>Micaelamys namaquensis</i> only consumed nuts. <i>Leucadendron pubescens</i> and <i>L. loranthifolium</i> are added to the list of known plant species that are scatter-hoarded by rodents. Nuts of <i>Cliffortia cuneata</i> and <i>C. phillipsii</i>, and the critically endangered <i>Widdringtonia cedarbergensis</i>, were consumed but not dispersed by small mammals, whereas nuts of <i>Ceratocaryum argenteum</i> were neither consumed nor scatter-hoarded by rodents (within its native range). <i>Gerbilliscus paeba</i> and <i>A. subspinosus</i> scatter-hoarded nuts aseasonally, outside of seed-fall periods. Scatter-hoarding was widespread throughout the Fynbos Biome, although it was highly localised across and within sampled sites. The absence of scatter-hoarding rodents at sites with rodent-dispersed plants remains an important aspect for future investigation.
DOI: 10.6084/m9.figshare.4810807.v2
title: Behaviour of CD4 and CD8 cells after an in vitro stimulation

description: CD4+ cell behaviour after an in vitro stimulation (tracked with CFSE). Time is in hours.<br><br>Data has been published in Statistical determination of threshold for cellular division in the CFSE-labeling assay, Liu et al. Journal of Immunological Methods, 2006 (doi:10.1016/j.jim.2006.03.010)<br><br>Data has been previously studied in Evaluation of Multitype Mathematical Models for CFSE-Labeling Experiment Data, Miao et al., Belletin of Mathematical Biology, 2012 (DOI 10.1007/s11538-011-9668-y)<br>
DOI: 10.6084/m9.figshare.4810795
title: anchoring.sav

description: Data for Goller, Leder, Cursiter, & Jenkins. <i>Anchoring Effects in Facial Attractiveness<br></i><br>
DOI: 10.6084/m9.figshare.4810807.v1
title: CD4_CFSE.xlsx

description: CD4+ cell behaviour after an in vitro stimulation (tracked with CFSE). Time is in hours.<br>
DOI: 10.6084/m9.figshare.4810795.v1
title: anchoring.sav

description: Data for Goller, Leder, Cursiter, & Jenkins. <i>Anchoring Effects in Facial Attractiveness<br></i><br>
DOI: 10.6084/m9.figshare.4810705
title: EEG data--Early and Late Stage Processing Abnormalities in Autism Spectrum Disorders: An ERP Study

description: This research assessed event-related potentials (ERPs) elicited during the processing of different kinds of visual stimuli among children with Autism Spectrum Disorder (ASD) (n=15) and typically developing (TD) children (n=19). Within a simple visual oddball paradigm, participating children passively viewed fruit and vegetable images that were used as standard stimuli in addition to images of these foods with their usual colors modified to create novel stimuli and cartoon depictions of these images (i,e., “deviant” stimuli). Analyses revealed significant main effect differences between the groups for P100, N100 and P300 components; ASD group children showing longer P100 latencies, weaker N100 amplitudes and larger P300 amplitudes than TD group. A Group x Hemisphere interaction also emerged for N400 amplitudes but differences were not significant in simple-effects analyses. Together these results suggested children with ASD may be characterized by lower attention resource allocation, and engagement during early stages of processing visual stimuli. However, ERPs in later processing stages suggested children with ASD and TD children have similar neural responses in attending to visual images as stimulus presentations continue.
DOI: 10.6084/m9.figshare.4810681
title: Results_Treatment_Goals_Support_Care.docx

description: Word document containing datasets for our manuscript regarding discrepancy of treatment goals
DOI: 10.6084/m9.figshare.4810663
title: Prairie plant cover data associated with the manuscript “Nutrient addition shifts plant community composition towards earlier flowering species in some prairie ecoregions in the U.S. Central Plains”

description: These data are from 11 prairie sites that are part of the Nutrient Network (nutnet.org). Absolute plant cover data were collected in the 4th year of fertilization at peak biomass and converted to relative plant cover (%) for this analysis. Please contact co-authors or Nutrient Network for more information.<br>
DOI: 10.6084/m9.figshare.4810681.v1
title: Results_Treatment_Goals_Support_Care.docx

description: Word document containing datasets for our manuscript regarding discrepancy of treatment goals
DOI: 10.6084/m9.figshare.4810654
title: Data from: Amphipod sex, mating behaviour and egg development as sources of intraspecific variation in feeding

description: Choice and no-choice assays conducted with the amphipod Gammarus aequicauda from Lake Qarun, Egypt and three algal species<br>
DOI: 10.6084/m9.figshare.4810654.v1
title: Data from: Amphipod sex, mating behaviour and egg development as sources of intraspecific variation in feeding

description: Choice and no-choice assays conducted with the amphipod Gammarus aequicauda from Lake Qarun, Egypt and three algal species<br>
DOI: 10.6084/m9.figshare.4810648
title: PLOS_DataFile

description: Data collected using camera traps in eastern CT, USA. Used to simulate differences in detectability based on number of active cameras in a small area
DOI: 10.6084/m9.figshare.4810648.v1
title: PLOS_DataFile

description: Data collected using camera traps in eastern CT, USA. Used to simulate differences in detectability based on number of active cameras in a small area
DOI: 10.6084/m9.figshare.4810600
title: Harald Störrle: How are Conceptual Models used in Industrial Software Development? An Online Survey, Proc. EASE'17 (DMP4)

description: The Survey instrument and the survey results to go with the paper "How are Conceptual Models used in Industrial Software Development? An Online Survey" by Harald Störrle, published in Proc. EASE'17.<br><br>Files:<br>* "Dump of live...": Questionnaire as administered through Google Forms, dumped as a PDF.<br><br> * DMP4: the data obtained that way, downloaded into an Excel sheet, then anonymized.
DOI: 10.6084/m9.figshare.4810597
title: Caracterização das redes

description: Mapeamento das características de rede mapeadas na dissertação do mestrado em Gestão do Conhecimento e Sistemas de Informação da Universidade FUMEC, de Thiago Chierici Cunha
DOI: 10.6084/m9.figshare.4810600.v1
title: Harald Störrle: How are Conceptual Models used in Industrial Software Development? An Online Survey, Proc. EASE'17 (DMP4)

description: The Survey instrument and the survey results to go with the paper "How are Conceptual Models used in Industrial Software Development? An Online Survey" by Harald Störrle, published in Proc. EASE'17.<br><br>Files:<br>* "Dump of live...": Questionnaire as administered through Google Forms, dumped as a PDF.<br><br> * DMP4: the data obtained that way, downloaded into an Excel sheet, then anonymized.
DOI: 10.6084/m9.figshare.4810597.v2
title: Caracterização das redes

description: Mapeamento das características de rede mapeadas na dissertação do mestrado em Gestão do Conhecimento e Sistemas de Informação da Universidade FUMEC, de Thiago Chierici Cunha
DOI: 10.6084/m9.figshare.4810597.v1
title: Caracterização das redes

description: Mapeamento das características de rede mapeadas na dissertação do mestrado em Gestão do Conhecimento e Sistemas de Informação da Universidade FUMEC, de Thiago Chierici Cunha
DOI: 10.6084/m9.figshare.4810528
title: patients

description: data
DOI: 10.6084/m9.figshare.4810528.v1
title: patients

description: data
DOI: 10.6084/m9.figshare.4810519
title: Original data for PONE-D-17-00691R1.zip

description: Individual-level data points behind means, medians, and variance measures for Fig 3, 4, 5, 6, and 7 for manuscript PONE-D-17-00691R1 (PLoS ONE).
DOI: 10.6084/m9.figshare.4810474
title: Late radiation-induced bowel syndromes, tobacco smoking, age at treatment and time since treatment – gynecological cancer survivors

description: <b>Background:</b> It is unknown whether smoking; age at time of radiotherapy or time since radiotherapy influence the intensity of late radiation-induced bowel syndromes. <b>Material and methods:</b> We have previously identified 28 symptoms decreasing bowel health among 623 gynecological-cancer survivors (three to twelve years after radiotherapy) and 344 matched population-based controls. The 28 symptoms were grouped into five separate late bowel syndromes through factor analysis. Here, we related possible predictors of bowel health to syndrome intensity, by combining factor analysis weights and symptom frequency on a person-incidence scale. <b>Results:</b> A strong (<i>p</i> p = .001). Younger age at treatment resulted in a higher intensity, except for the leakage syndrome. For the urgency syndrome, intensity decreased with time since treatment. <b>Conclusions:</b> Smoking aggravates the radiation-induced urgency syndrome and excessive gas discharge syndrome. Smoking cessation may promote bowel health among gynecological-cancer survivors. Furthermore, by understanding the mechanism for the decline in urgency-syndrome intensity over time, we may identify new strategies for prevention and alleviation.
DOI: 10.6084/m9.figshare.4810480
title: Raw data

description: manual and saccadic responses to stop signal task. Also includes blocks where the participant was required to ignore the stop signal and blocks in the manual task where the participant had to give a dual response. Files with the extension _cut.mat are ones where the data has been cleaned.<br>
DOI: 10.6084/m9.figshare.4810504
title: schoenle_medication_data.xlsx

description: Schoenle et al. 2017. An experimental test of the physiological consequences of avian malaria infection. <i>Journal of Animal Ecology.</i>DOI:10.1111/1365-2656.12753
DOI: 10.6084/m9.figshare.4810480.v1
title: Raw data

description: manual and saccadic responses to stop signal task. Also includes blocks where the participant was required to ignore the stop signal and blocks in the manual task where the participant had to give a dual response. Files with the extension _cut.mat are ones where the data has been cleaned.<br>
DOI: 10.6084/m9.figshare.4810474.v1
title: Late radiation-induced bowel syndromes, tobacco smoking, age at treatment and time since treatment – gynecological cancer survivors

description: <b>Background:</b> It is unknown whether smoking; age at time of radiotherapy or time since radiotherapy influence the intensity of late radiation-induced bowel syndromes. <b>Material and methods:</b> We have previously identified 28 symptoms decreasing bowel health among 623 gynecological-cancer survivors (three to twelve years after radiotherapy) and 344 matched population-based controls. The 28 symptoms were grouped into five separate late bowel syndromes through factor analysis. Here, we related possible predictors of bowel health to syndrome intensity, by combining factor analysis weights and symptom frequency on a person-incidence scale. <b>Results:</b> A strong (<i>p</i> p = .001). Younger age at treatment resulted in a higher intensity, except for the leakage syndrome. For the urgency syndrome, intensity decreased with time since treatment. <b>Conclusions:</b> Smoking aggravates the radiation-induced urgency syndrome and excessive gas discharge syndrome. Smoking cessation may promote bowel health among gynecological-cancer survivors. Furthermore, by understanding the mechanism for the decline in urgency-syndrome intensity over time, we may identify new strategies for prevention and alleviation.
DOI: 10.6084/m9.figshare.4810504.v1
title: schoenle_medication_data.xlsx

description: Schoenle et al. 2017. An experimental test of the physiological consequences of avian malaria infection. <i>Journal of Animal Ecology.</i>DOI:10.1111/1365-2656.12753
DOI: 10.6084/m9.figshare.4810519.v1
title: Original data for PONE-D-17-00691R1.zip

description: Individual-level data points behind means, medians, and variance measures for Fig 3, 4, 5, 6, and 7 for manuscript PONE-D-17-00691R1 (PLoS ONE).
DOI: 10.6084/m9.figshare.4810465
title: Scripts and code

description: All scripts for presentation and analysis of manual and saccadic stop signal tasks with and without alcohol<br>
DOI: 10.6084/m9.figshare.4810465.v1
title: Scripts and code

description: All scripts for presentation and analysis of manual and saccadic stop signal tasks with and without alcohol<br>
DOI: 10.6084/m9.figshare.4810453
title: Raw_data_ECE2017.xlsx

description: Raw data of dependent variables used for statistical comparison among treatments
DOI: 10.6084/m9.figshare.4810450
title: Ferromagnetic nematic liquid crystals

description: This review presents experimental realization and behaviour of the ferromagnetic nematic phase, which is observed in different suspensions of magnetic nanoplatelets. After a general introduction, the challenges in the synthesis of magnetic nanoplatelets and preparation of the nematic suspensions are discussed. A brief explanation of a simple macroscopic theory, which can be used to understand the main features of the ferromagnetic phase, follows. In the main part, four different ferromagnetic nematic systems are presented: (i) ferromagnetic suspensions of the platelets in nematic liquid crystals, (ii) dense suspensions in an isotropic solvent – ferromagnetic ferrofluids, (iii) biaxial ferromagnetic nematic suspensions, and (iv) chiral ferromagnetic suspensions. The main focus is on the formation of the ferromagnetic phases and the growth of the magnetic domains. At the end, dynamics of ferromagnetic liquid crystals and methods for their observation are briefly discussed.
DOI: 10.6084/m9.figshare.4810450.v1
title: Ferromagnetic nematic liquid crystals

description: This review presents experimental realization and behaviour of the ferromagnetic nematic phase, which is observed in different suspensions of magnetic nanoplatelets. After a general introduction, the challenges in the synthesis of magnetic nanoplatelets and preparation of the nematic suspensions are discussed. A brief explanation of a simple macroscopic theory, which can be used to understand the main features of the ferromagnetic phase, follows. In the main part, four different ferromagnetic nematic systems are presented: (i) ferromagnetic suspensions of the platelets in nematic liquid crystals, (ii) dense suspensions in an isotropic solvent – ferromagnetic ferrofluids, (iii) biaxial ferromagnetic nematic suspensions, and (iv) chiral ferromagnetic suspensions. The main focus is on the formation of the ferromagnetic phases and the growth of the magnetic domains. At the end, dynamics of ferromagnetic liquid crystals and methods for their observation are briefly discussed.
DOI: 10.6084/m9.figshare.4810420
title: Imaging_rawdata_Trondheim.zip

description: Raw data Imaging files of antenna lobe projections neurons (<i>Helicoverpa armigera</i>) stained with Fura2 (ratiometric), stimulated with plant odors (Sunflower or Ylang ylang) in presence with pheromones.
DOI: 10.6084/m9.figshare.4810420.v1
title: Imaging_rawdata_Trondheim.zip

description: Raw data Imaging files of antenna lobe projections neurons (<i>Helicoverpa armigera</i>) stained with Fura2 (ratiometric), stimulated with plant odors (Sunflower or Ylang ylang) in presence with pheromones.
DOI: 10.6084/m9.figshare.4810222
title: Hemoglobin testing accuracy_Rwanda

description: Reference<b> </b>Hb values were determined in 132 children 6 to 59 months of age by using a standard hematology analyzer (Sysmex KN21). Half were tested using the HemoCue wicking method; half were tested using the HemoCue gravity method; and 112 had successful Hb readings with Pronto® DCI-mini™. This study evaluated the performance of two HemoCue® Hb 201+ blood sampling methods and a noninvasive device (Pronto® with DCI-mini™ sensors) in a Rwandan pediatric clinic.<b> </b>
DOI: 10.6084/m9.figshare.4810255
title: controls

description: data
DOI: 10.6084/m9.figshare.4810255.v1
title: controls

description: data
DOI: 10.6084/m9.figshare.4810165
title: IsdG protein tree and alignment

description: Sequences were aligned with MAFFT using the E-INS-i strategy. The topologies were inferred using IQ-TREE using an LG+G4 substitution model and ultrafast bootstrapping. The phylogenies were midpoint rooted and visualized using iTOL.
DOI: 10.6084/m9.figshare.4810165.v1
title: IsdG protein tree and alignment

description: Sequences were aligned with MAFFT using the E-INS-i strategy. The topologies were inferred using IQ-TREE using an LG+G4 substitution model and ultrafast bootstrapping. The phylogenies were midpoint rooted and visualized using iTOL.
DOI: 10.6084/m9.figshare.4810018
title: IsdG_tree_Lojek_etal.fa

description: multiple sequence alignment constructed using MAFFT (--thread -1 --reorder --bl 30 --maxiterate 1000 --retree 1 --genafpair)
DOI: 10.6084/m9.figshare.4810015
title: IsdG_tree_Lojek_etal.tre

description: Gene tree in newick format constructed using IQ-TREE (-nt 8 -m TEST -alrt 1000 -bb 1000)
DOI: 10.6084/m9.figshare.4810018.v1
title: IsdG_tree_Lojek_etal.fa

description: multiple sequence alignment constructed using MAFFT (--thread -1 --reorder --bl 30 --maxiterate 1000 --retree 1 --genafpair)
DOI: 10.6084/m9.figshare.4810015.v1
title: IsdG_tree_Lojek_etal.tre

description: Gene tree in newick format constructed using IQ-TREE (-nt 8 -m TEST -alrt 1000 -bb 1000)
DOI: 10.6084/m9.figshare.4807720
title: LL's data 2

description: part 2<br>
DOI: 10.6084/m9.figshare.4807720.v1
title: LL's data 1

description: part 1<br>
DOI: 10.6084/m9.figshare.4807273
title: Late chronotypes are associated with neoadjuvant chemotherapy-induced nausea and vomiting in women with breast cancer

description: Neoadjuvant chemotherapy, that is, the administration of chemotherapy before surgery, has been commonly used for locally advanced breast cancer to improve the surgical outcomes and increase the opportunity for breast-conserving therapy. Women with breast cancer often receive an anthracycline-based regimen as the neoadjuvant chemotherapy, which is associated with a high risk of emesis. Despite the development of novel antiemetics, chemotherapy-induced nausea and vomiting (CINV) has been commonly reported as a major adverse effect, affecting the quality of life of the patients. However, the factors predicting CINV in women with breast cancer undergoing neoadjuvant chemotherapy remain unclear. In this single-institution, prospective, observational study conducted at an outpatient cancer centre in the Republic of Korea from November 2013 to March 2016, we analysed women with breast cancer who planned to be treated with neoadjuvant chemotherapy before surgery. Candidate factors associated with CINV were assessed before neoadjuvant chemotherapy using the Munich Chronotype Questionnaire, Pittsburgh Sleep Quality Index and Hospital Anxiety and Depression Scale. CINV was assessed after chemotherapy by using the Multinational Association of Supportive Care in Cancer Antiemesis Tool. Of a total of 143 participants, 7 patients were lost to follow-up and 2 patients were excluded due to changes in their treatment plan; thus, 134 patients were finally included in the analyses. Overall, 48.5% of the participants experienced CINV, with delayed CINV prevalence (42.5%) being more common than acute (39.6%). In the univariate analyses, overall CINV was significantly associated with late chronotypes (odds ratio [OR], 3.49; 95% confidence interval [CI], 1.37–8.87; <i>p</i> = 0.009), a history of nausea/vomiting (OR, 2.19; 95% CI, 1.10–4.37; <i>p</i> = 0.026) and anxiety (OR, 2.25; 95% CI, 1.05–4.81; <i>p</i> = 0.036). In the multivariate analyses, late chronotypes (OR, 3.53; 95% CI, 1.27–9.79; <i>p</i> = 0.015) and a history of nausea/vomiting (OR, 2.83; 95% CI, 1.31–6.13; <i>p</i> = 0.008) remained significantly associated with CINV. In conclusion, in women with breast cancer undergoing neoadjuvant chemotherapy before surgery, late chronotypes were found to have an increased risk of CINV; these data suggest that clinicians need to assess and consider the chronotype in the management of CINV.