cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22110473.v1
title: Genetic architecture for skeletal muscle glycolytic potential in Chinese Erhualian pigs revealed by a genome-wide association study using 1.4M SNP array

description: Muscle glycolytic potential (GP) is a key factor affecting multiple meat quality traits. It is calculated based on the contents of residual glycogen and glucose (RG), glucose-6-phosphate (G6P), and lactate (LAT) contents in muscle. However, the genetic mechanism of glycolytic metabolism in skeletal muscle of pigs remains poorly understood. With a history of more than 400 years and some unique characteristics, the Erhualian pig is called the "giant panda" (very precious) in the world's pig species by Chinese animal husbandry. Here, we performed a genome-wide association study (GWAS) using 1.4M single nucleotide polymorphisms (SNPs) chips for <em>longissimus</em> RG, G6P, LAT, and GP levels in 301 purebred Erhualian pigs. We found that the average GP value of Erhualian was unusually low (68.09 µmol/g), but the variation was large (10.4–112.7 µmol/g). The SNP-based heritability estimates for the four traits ranged from 0.16-0.32. In total, our GWAS revealed 31 quantitative trait loci (QTLs), including 8 for RG, 9 for G6P, 9 for LAT, 5 for GP. Of these loci, 8 were genome-wide significant (<em>P</em> &lt; 3.8×10-7), and 6 loci were common to two or three traits. Multiple promising candidate genes such as <em>FTO</em>, <em>MINPP1</em>, <em>RIPOR2</em>,<em> SCL8A3</em>, <em>LIFR</em> and <em>SRGAP1</em> were identified. The genotype combinations of the 5 GP-associated SNPs also showed significant effect on other meat quality traits. These results not only provide insights into the genetic architecture of GP related traits in Erhualian, but also are useful for pig breeding programs involving this breed.
DOI: 10.5281/zenodo.7157982
title: Reproduction package for the paper "Prospects of Gravitational Wave Follow-up Through a Wide-field Ultra-violet Satellite: a Dorado Case Study"

description: This is a basic reproduction package for the paper "Prospects of Gravitational Wave Follow-up Through a Wide-field Ultra-violet Satellite: a Dorado Case Study" by [Dorsman et al. (2022)](https://doi.org/10.48550/arXiv.2206.09696). This package provides (1) data and software to reproduce the results from the Bayesian inference, (2) the pre-computed results from the Bayesian inference for the purpose of reproducing the plots, and (3) the plots.
description: Authors acknowledge funding support through the NWO VIDI (2015) and projectruimte Grant 680-91-134 (PI: S.M. Nissanke).
DOI: 10.5281/zenodo.7157983
title: Reproduction package for the paper "Prospects of Gravitational Wave Follow-up Through a Wide-field Ultra-violet Satellite: a Dorado Case Study"

description: This is a basic reproduction package for the paper "Prospects of Gravitational Wave Follow-up Through a Wide-field Ultra-violet Satellite: a Dorado Case Study" by [Dorsman et al. (2022)](https://doi.org/10.48550/arXiv.2206.09696). This package provides (1) data and software to reproduce the results from the Bayesian inference, (2) the pre-computed results from the Bayesian inference for the purpose of reproducing the plots, and (3) the plots.
description: Authors acknowledge funding through the NWO Grant: 680-91-134.
DOI: 10.5281/zenodo.7534615
title: Reproduction package for the paper "Prospects of Gravitational Wave Follow-up Through a Wide-field Ultra-violet Satellite: a Dorado Case Study"

description: This is a basic reproduction package for the paper "Prospects of Gravitational Wave Follow-up Through a Wide-field Ultra-violet Satellite: a Dorado Case Study" by [Dorsman et al. (2022)](https://doi.org/10.48550/arXiv.2206.09696). This package provides (1) data and software to reproduce the results from the Bayesian inference, (2) the pre-computed results from the Bayesian inference for the purpose of reproducing the plots, and (3) the plots.
description: Authors acknowledge funding support through the NWO VIDI (2015) and projectruimte Grant 680-91-134 (PI: S.M. Nissanke).
DOI: 10.5281/zenodo.7540160
title: Reproduction package for the paper "Prospects of Gravitational Wave Follow-up Through a Wide-field Ultra-violet Satellite: a Dorado Case Study"

description: This is a basic reproduction package for the paper "Prospects of Gravitational Wave Follow-up Through a Wide-field Ultra-violet Satellite: a Dorado Case Study" by [Dorsman et al. (2022)](https://doi.org/10.48550/arXiv.2206.09696). This package provides (1) data and software to reproduce the results from the Bayesian inference, (2) the pre-computed results from the Bayesian inference for the purpose of reproducing the plots, and (3) the plots.
description: Authors acknowledge funding support through the NWO VIDI (2015) and projectruimte Grant 680-91-134 (PI: S.M. Nissanke).
DOI: 10.6084/m9.figshare.22110479
title: Effects of Micro-sprinkler Irrigation under Plastic Film on Bacterial Community and Enzyme Activity of Tomato Rhizosphere Soil in Greenhouse

description: The response mechanism of bacterial community and enzyme activity in rhizosphere soil of vegetables under irrigation measures for new water-saving micro-sprinkling irrigation under plastic film (MSPF) in facility agriculture is unclear. Therefore, a completely randomized experimental design was used to study the effects of different irrigation frequencies (F, F1: irrigation frequency 3d, F2: irrigation frequency 5d, F3: irrigation frequency 7d ) and irrigation amount (I, I1: 0.7 Epan, where Epan is the cumulative evaporation of Φ20 cm standard pan, I2: 1.0 Epan, I3: 1.2 Epan ) on bacterial community and enzyme activity in rhizosphere soil of greenhouse tomatoes. The results showed that with the increase of F or I, the total number of soil bacteria in spring tomatoes and autumn tomatoes increased first and then decreased at the OTUs classification level. The irrigation frequency of 5 d can optimize the bacterial community, increase the abundance of functional genes related to nitrogen and phosphorus metabolism of soil bacteria, and increase the activity of nitrogen, carbon and phosphorus metabolism-related enzymes. With the increase of I, the diversity of soil bacterial community structure increased first and then decreased. The 1.00Epan under MSPF helps to increase the abundance of nitrogen and phosphorus metabolism functional genes of soil bacteria, and ensure that tomato rhizosphere soil has high nitrogen, carbon and phosphorus metabolism-related enzyme activities. With the increase of F or I, the yield of tomato increased first and then decreased, among which the I had the greatest influence on the yield of tomato. If the I is increased by 1.00%, the yield of tomato increases by at least 39.24%. There was a positive interaction between soil bacterial community, soil enzyme activity and yield of greenhouse tomatoes under the control of MSPF irrigation measures. Considering comprehensively, the F2I2 combined irrigation mode is recommended for MSPF in Northwest China.
DOI: 10.6084/m9.figshare.22110479.v1
title: Effects of Micro-sprinkler Irrigation under Plastic Film on Bacterial Community and Enzyme Activity of Tomato Rhizosphere Soil in Greenhouse

description: The response mechanism of bacterial community and enzyme activity in rhizosphere soil of vegetables under irrigation measures for new water-saving micro-sprinkling irrigation under plastic film (MSPF) in facility agriculture is unclear. Therefore, a completely randomized experimental design was used to study the effects of different irrigation frequencies (F, F1: irrigation frequency 3d, F2: irrigation frequency 5d, F3: irrigation frequency 7d ) and irrigation amount (I, I1: 0.7 Epan, where Epan is the cumulative evaporation of Φ20 cm standard pan, I2: 1.0 Epan, I3: 1.2 Epan ) on bacterial community and enzyme activity in rhizosphere soil of greenhouse tomatoes. The results showed that with the increase of F or I, the total number of soil bacteria in spring tomatoes and autumn tomatoes increased first and then decreased at the OTUs classification level. The irrigation frequency of 5 d can optimize the bacterial community, increase the abundance of functional genes related to nitrogen and phosphorus metabolism of soil bacteria, and increase the activity of nitrogen, carbon and phosphorus metabolism-related enzymes. With the increase of I, the diversity of soil bacterial community structure increased first and then decreased. The 1.00Epan under MSPF helps to increase the abundance of nitrogen and phosphorus metabolism functional genes of soil bacteria, and ensure that tomato rhizosphere soil has high nitrogen, carbon and phosphorus metabolism-related enzyme activities. With the increase of F or I, the yield of tomato increased first and then decreased, among which the I had the greatest influence on the yield of tomato. If the I is increased by 1.00%, the yield of tomato increases by at least 39.24%. There was a positive interaction between soil bacterial community, soil enzyme activity and yield of greenhouse tomatoes under the control of MSPF irrigation measures. Considering comprehensively, the F2I2 combined irrigation mode is recommended for MSPF in Northwest China.
DOI: 10.6084/m9.figshare.21997289
title: Optimal Myoelectric Control Strategy And Site Selection For Upper Limb Prostheses

description: Current two-site myoelectric control strategy selection and site-finding processes are often slow, challenging, and can lead to sub-optimal outcomes. Liberating Technologies, Inc., along with its clinical partners and Worcester Polytechnic Institute (WPI) aim to improve these processes. LTI is developing a diagnostic device that clinicians can use to accurately and efficiently location the optimal control strategy and electrode location. The device accomplishes this by recording the electrical signal on large portions of the patient’s arm. The aim is that electrode sites and control strategy selection will lead to greater device adoption, a reduction in contralateral overuse injuries, and an improved quality of life for individuals with upper limb difference.
DOI: 10.5281/zenodo.6417428
title: Coastal extreme sea levels in the Caribbean Sea induced by tropical cyclones

description: Previous version contained the return levels of coastal significant wave height and sea surface elevation along the Caribbean coastlines corresponding to the periods of 10, 50, 100, 200 and 500 years. The return periods have been computed fitting a Generalised Pareto Distribution to a set of hydrodynamic-wave coupled ocean simulations forced with 1000 synthetic tropical cyclones. See the paper Martin et al (under review) for details. The file (Return_levels.mat) contains a Matlab table (with header names) indicating latitude, longitude and the return levels described above, named as Hs (significant wave height) and SSE (sea surface elevation). Three other datasets have been included, with the subsample of the Tropical Cyclones selected for the study (Subsample.mat), the geographic data of the coastal grid points used for our analysis (Coastaline.mat), and finally a dataset with the results of the analysis presented in the paper (Results_4_runs.mat). All datasets are provided in a .mat file, generated using Matlab. First dataset contains a Matlab table (with header names) indicating latitude and longitude, radius of maximum wind speed, minimum pressure and maximum wind speed a long the track of the Tropical Cyclone, for the 1000 samples selected. Second dataset provides both Latitude and Longitude of the coastal grid points used for the analysis. The last dataset contains a Matlab table (with header names) where the first column represents the Tropical Cyclone, columns 2,3 and 4 contain the maximum of sea surface elevation (SSE) during the lifetime of the Tropical Cyclone for each coastal point, for the 3 decoupled runs, wind-forced only, pressure-forced only and wind and pressure respectively. The next 4 columns contain the values of the variables for the coupled simulations with WWM-III, maximum significant wave height (Hs), maximum SSE, median of Peak Direction (Dp) and median of Peak period (Tp). All these variables contain a description in the dataset as variable information, and are provided for all coastal points of our grid.
DOI: 10.5281/zenodo.7144670
title: Supplementary material

description: Supplementary material
DOI: 10.5281/zenodo.7144671
title: Ruminal microbiota

description: List of identified bacterial and archaeal OTU and relative abundance for samples of ruminal fluid. Correlation coefficients between microbial abundances and main production variables. Cows were fed herbage-silage-based diets supplemented or not with Acacia mearnsii extract.
DOI: 10.5281/zenodo.7646644
title: Supplementary material

description: Supplementary material
DOI: 10.34740/kaggle/dsv/4248516
title: Herbarium 2021 balanced-1K
DOI: 10.6073/pasta/98b9d0a612c17ab9f8f121d9741e72a6
title: AWE01 Meteorological data from the konza prairie headquarters weather station

description: The following weather data are included in this data set: hourly: mean temperature, mean relative humidity, mean wind speed, total precipitation total solar radiation, wind direction, max wind speed (sampled on the hour; record type 1) ; daily: mean, maximum and minimum air temperature, relative humidity, total precipitation, total solar radiation; mean, maximum and minimum soil temperature, average wind speed (sampled at midnight; record type 2). These data are collectecd by a micrologger at headquarters on Konza Prairie.
DOI: 10.5281/zenodo.7464050
title: Experimental meterials for "Identifying Lines and Interpreting Vertical Jumps in Eye Tracking Studies of Reading Text and Code"

description: Experimental materials for the paper "Identifying Lines and Interpreting Vertical Jumps in Eye Tracking Studies of Reading Text and Code" published in the ACM Transactions on Applied Perception. Includes the texts used in the eye tracking experiments, the data collected by the eye tracker for all the participants, the Python script used to analyze the data, and the graphs produced by this script.
DOI: 10.5281/zenodo.7464051
title: Experimental meterials for "Identifying Lines and Interpreting Vertical Jumps in Eye Tracking Studies of Reading Text and Code"

description: Experimental materials for the paper "Identifying Lines and Interpreting Vertical Jumps in Eye Tracking Studies of Reading Text and Code" published in the ACM Transactions on Applied Perception. Includes the texts used in the eye tracking experiments, the data collected by the eye tracker for all the participants, the Python script used to analyze the data, and the graphs produced by this script.
DOI: 10.5281/zenodo.7646671
title: SciExpeM - 10.5281/zenodo.7646671

description: Barbella et al. - Joint Meeting of The Italian and Portuguese Sections of The Combustion Institute (1994), p. III-13.
DOI: 10.5281/zenodo.7646670
title: SciExpeM - 10.5281/zenodo.7646671

description: Barbella et al. - Joint Meeting of The Italian and Portuguese Sections of The Combustion Institute (1994), p. III-13.
DOI: 10.6084/m9.figshare.22110500
title: Supplementary material for: Microinjury-Induced Tumor Necrosis Factor-α Surge Stimulates Hair Regeneration in Mice

description: <em><strong>Introduction:</strong></em> Tumor necrosis factor (TNF)-α released after follicular injury such as that caused by plucking plays a role in the activation of hair regeneration. Microneedle (MN) treatment is applied to the scalp to increase permeability and facilitate the delivery of any number of compounds. Because the MN treatment causes injury to the epidermis, albeit minor, we reasoned that this treatment would lead to a temporary TNF-α surge and thereby promote hair regeneration. <em><strong>Methods:</strong></em> To investigate the effects of MN-treatment-induced microinjury and TNF-α on hair growth, we used C57BL/6N mice which were divided into six experimental groups: three groups of 1) negative control (NC), 2) plucking positive control (PK), and 3) MN therapy system (MTS) mice; and three groups identical to above were treated with a TNF-α blocker for 3 weeks: 4) NCB, 5) PKB, and 6) MTSB group. <em><strong>Results:</strong></em> After injury, TNF-α surge occurred on day 3 in the PK group and on day 6 in the MTS group. Wnt proteins and VEGF expression were markedly increased in the PK group on day 3 and on day 6 in the MTS group compared to the NC group. Following wound healing, only MTS and PK groups displayed thickened epidermis and longer HF length. Within the 2 weeks following treatment, the rate of hair growth was much slower in the injured mice treated with the TNF-α blocker. <em><strong>Conclusion:</strong></em> Our findings indicate that microinjury stimulates the wound-healing mechanism via TNF-α/Wnt/VEGF surge to induce hair growth, and that blocking TNF-α inhibits this growth process.
DOI: 10.6084/m9.figshare.22104743.v3
title: Original data.xlsx

description: Raw data for the submitted manuscript of ECY23-0138
DOI: 10.6084/m9.figshare.22104743.v4
title: Original data.xlsx

description: Raw data for the submitted manuscript of ECY23-0138
DOI: 10.34740/kaggle/dsv/5010373
title: Egypt Gold Prices | Daily Updated
DOI: 10.6084/m9.figshare.21437946
title: ProjectSVR models for reference mapping

description: R object in *.rds format saving the models for reference mapping using ProjectSVR. <br>
DOI: 10.6084/m9.figshare.21437946.v1
title: ProjectSVR models for reference mapping

description: R object in *.rds format saving the models for reference mapping using ProjectSVR. <br>
DOI: 10.5281/zenodo.7646646
title: IV data and TEM characterization of Cu/SiO2/W CBRAM devices

description: The Cycle archive folder contains the IV raw data of Cu/SiO2/W CBRAM devices. The TEM folder contains raw data of TEM microscopy and EDX measurments.
DOI: 10.5281/zenodo.7646645
title: IV data and TEM characterization of Cu/SiO2/W CBRAM devices

description: The Cycle archive folder contains the IV raw data of Cu/SiO2/W CBRAM devices. The TEM folder contains raw data of TEM microscopy and EDX measurments.
DOI: 10.25345/c5kw57t7p
title: MassIVE MSV000091294 - Total and phosphoproteome analysis of effects of topoisomerase 1 and ATR inhibitors in small cell lung cancer nuclei
title: Total and phosphoproteome analysis of effects of SN-38 (topoisomerase 1 inhibitor) and M1774 (ATR inhibitor) alone and in combination. All analyses performed on nuclear extracts. Please see uploaded MetaData for more details.
DOI: 10.14272/viwgicykzbeotd-uhfffaoysa-n.1
title: C24H21N3O5
title: InChI=1S/C24H21N3O5/c1-30-23(28)16-9-10-17-18(12-16)21-20(32-24(17)29)8-5-11-31-14-19-22(21)27(26-25-19)13-15-6-3-2-4-7-15/h2-4,6-7,9-10,12H,5,8,11,13-14H2,1H3

description: This dataset contains experimental data from a sample (InChI=1S/C24H21N3O5/c1-30-23(28)16-9-10-17-18(12-16)21-20(32-24(17)29)8-5-11-31-14-19-22(21)27(26-25-19)13-15-6-3-2-4-7-15/h2-4,6-7,9-10,12H,5,8,11,13-14H2,1H3). The datasets from the following experiments are available: 1H nuclear magnetic resonance spectroscopy (1H NMR) high-resolution electrospray ionisation mass spectrometry (HRESIMS) distortionless enhancement with polarization transfer (DEPT)
DOI: 10.14272/bfiwuvqldzlhqk-uhfffaoysa-n/chmo0000485
title: high-resolution electrospray ionisation mass spectrometry (HRESIMS) ()
title: InChI=1S/C24H21N3O5/c1-30-23(28)16-9-10-17-18(12-16)21-20(32-24(17)29)8-5-11-31-14-19-22(21)25-26-27(19)13-15-6-3-2-4-7-15/h2-4,6-7,9-10,12H,5,8,11,13-14H2,1H3

description: dataset for high-resolution electrospray ionisation mass spectrometry (HRESIMS) HRMS (ESI) m/z: [M+H]+ Calcd for C24H22N3O5+ : 432.1554; Found: 432.1557.
DOI: 10.14272/bfiwuvqldzlhqk-uhfffaoysa-n.1
title: C24H21N3O5
title: InChI=1S/C24H21N3O5/c1-30-23(28)16-9-10-17-18(12-16)21-20(32-24(17)29)8-5-11-31-14-19-22(21)25-26-27(19)13-15-6-3-2-4-7-15/h2-4,6-7,9-10,12H,5,8,11,13-14H2,1H3

description: This dataset contains experimental data from a sample (InChI=1S/C24H21N3O5/c1-30-23(28)16-9-10-17-18(12-16)21-20(32-24(17)29)8-5-11-31-14-19-22(21)25-26-27(19)13-15-6-3-2-4-7-15/h2-4,6-7,9-10,12H,5,8,11,13-14H2,1H3). The datasets from the following experiments are available: 1H nuclear magnetic resonance spectroscopy (1H NMR) high-resolution electrospray ionisation mass spectrometry (HRESIMS)
DOI: 10.14272/bfiwuvqldzlhqk-uhfffaoysa-n/chmo0000593
title: 1H nuclear magnetic resonance spectroscopy (1H NMR) ()
title: InChI=1S/C24H21N3O5/c1-30-23(28)16-9-10-17-18(12-16)21-20(32-24(17)29)8-5-11-31-14-19-22(21)25-26-27(19)13-15-6-3-2-4-7-15/h2-4,6-7,9-10,12H,5,8,11,13-14H2,1H3

description: dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR) 1H NMR (400 MHz, Acetonitrile-d3 [1.94 ppm], ppm) δ = 8.33 (d, J = 8.2 Hz, 1H), 8.08–8.06 (m, 1H), 7.43–7.35 (m, 4H), 7.32–7.28 (m, 2H), 5.68 (d, J = 7.4 Hz, 2H), 4.89–4.80 (m, 1H), 4.30–4.23 (m, 1H), 3.87 (s, 3H), 3.76–3.65 (m, 2H), 2.61–2.51 (m, 1H), 2.42–2.31 (m, 1H), 1.79–1.75 (m, 1H), 1.73–1.64 (m, 1H).
DOI: 10.14272/viwgicykzbeotd-uhfffaoysa-n/chmo0000485
title: high-resolution electrospray ionisation mass spectrometry (HRESIMS) ()
title: InChI=1S/C24H21N3O5/c1-30-23(28)16-9-10-17-18(12-16)21-20(32-24(17)29)8-5-11-31-14-19-22(21)27(26-25-19)13-15-6-3-2-4-7-15/h2-4,6-7,9-10,12H,5,8,11,13-14H2,1H3

description: dataset for high-resolution electrospray ionisation mass spectrometry (HRESIMS) HRMS (ESI) m/z: [M+H]+ Calcd for C24H22N3O5+: 432.1554; Found: 432.1555.
DOI: 10.14272/viwgicykzbeotd-uhfffaoysa-n/chmo0000593
title: 1H nuclear magnetic resonance spectroscopy (1H NMR) ()
title: InChI=1S/C24H21N3O5/c1-30-23(28)16-9-10-17-18(12-16)21-20(32-24(17)29)8-5-11-31-14-19-22(21)27(26-25-19)13-15-6-3-2-4-7-15/h2-4,6-7,9-10,12H,5,8,11,13-14H2,1H3

description: dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR) 1H NMR (400 MHz, Acetone-d6 [2.05 ppm], ppm) δ = 8.24 (d, J = 8.2 Hz, 1H), 7.98 (dd, J = 1.5 Hz, J = 8.2 Hz, 1H), 7.13–7.08 (m, 3H), 7.07 (d, J = 1.2 Hz, 1H), 7.02–6.97 (m, 2H), 5.51 (d, J = 15.0 Hz, 1H), 5.20 (d, J = 15.0 Hz, 1H), 4.69 (d, J = 14.2 Hz, 1H), 4.33 (d, J = 14.2 Hz, 1H), 3.73 (s, 3H), 3.62–3.58 (m, 2H), 2.12–2.07 (m, 1H), 1.88–1.82 (m, 1H), 1.72–1.62 (m, 1H), 1.58–1.49 (m, 1H).
DOI: 10.14272/viwgicykzbeotd-uhfffaoysa-n/chmo0000596
title: distortionless enhancement with polarization transfer (DEPT) ()
title: InChI=1S/C24H21N3O5/c1-30-23(28)16-9-10-17-18(12-16)21-20(32-24(17)29)8-5-11-31-14-19-22(21)27(26-25-19)13-15-6-3-2-4-7-15/h2-4,6-7,9-10,12H,5,8,11,13-14H2,1H3

description: dataset for distortionless enhancement with polarization transfer (DEPT) 13C NMR (100 MHz, Acetone-d6 [29.9 ppm], ppm) δ = 129.9, 128.6, 128.2, 128.1, 128.1, 124.3, 71.7, 66.8, 52.4, 52.0, 29.8, 27.3.
DOI: 10.5281/zenodo.7646219
title: Transposons are a major contributor to gene expression variability under selection in rice populations

description: Dataset and code related to the publication: Castanera R., Morales-Díaz N., Gupta S., Purugganan M., Casacuberta JM (2022). Transposons are a major contributor to gene expression variability under selection in rice populations. Research Square. https://doi.org/10.21203/rs.3.rs-2197876/v1. <br> 1) TIP_data folder: INDICA_teinsertions_5_2_2_matrix_sorted_ID_MAF003.txt: TIP matrix used for TIP-eQTL mapping (binary form, where 0 = absence, 1= presence)<br> INDICA_teinsertions_5_2_2_matrix_sorted_ID_MAF003.info: TIP information (chrom,start,superfamily,family,maf)<br> JAPONICA_teinsertions_5_2_2_matrix_sorted_ID_MAF003.txt: TIP matrix used for TIP-eQTL mapping (binary form, where 0 = absence, 1= presence)<br> JAPONICA_teinsertions_5_2_2_matrix_sorted_ID_MAF003.info:TIP information (chrom,start,superfamily,family,maf) <br> 2) SNP_data folder: SNP_matrix_final_IRGC_Indica_MAF003.lfmm: SNP binary matrix used for TIP-eQTL mapping <br> SNP_matrix_final_IRGC_Indica_MAF003.info: SNP information<br> SNP_matrix_final_IRGC_japonica_MAF003.lfmm: SNP binary matrix used for TIP-eQTL mapping <br> SNP_matrix_final_IRGC_japonica_MAF003.info:SNP information 3) Expression data: Normalized expression data and accessory files used for TIP-eQTL analysis (as described in TIP-eQTL_matrix.R) Code: PopoolationTE2.sh: Bash script to reproduce PopoolationTE2 analysis (TIP detection) TIP-eQTL_matrix.R: R code to reproduce eQTL analyses