cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28928015.v1
title: Carpenter_data_README.csv

description: README file describing serological sampling data found in Carpenter_data.csv
DOI: 10.17632/ff62svks69
title: PHON: A program to calculate phonons using the small displacement method

description: Abstract The program phon calculates force constant matrices and phonon frequencies in crystals. From the frequencies it also calculates various thermodynamic quantities, like the Helmholtz free energy, the entropy, the specific heat and the internal energy of the harmonic crystal. The procedure is based on the small displacement method, and can be used in combination with any program capable to calculate forces on the atoms of the crystal. In order to examine the usability of the method, I present he... Title of program: PHON Catalogue Id: AEDP_v1_0 Nature of problem Stable crystals at low temperature can be well described by expanding the potential energy around the atomic equilibrium positions. The movements of the atoms around their equilibrium positions can then be described using harmonic theory, and is characterised by global vibrations called phonons, which can be identified by vectors in the Brillouin zone of the crystal, and there are 3 phonon branches for each atom in the primitive cell. The problem is to calculate the frequencies of these phonons ... Versions of this program held in the CPC repository in Mendeley Data AEDP_v1_0; PHON; 10.1016/j.cpc.2009.03.010 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/pvxrvs73s5
title: All Time Buy Demands

description: We provide a real world data set from Bosch Siemens Hausgeräte GmbH
(BSH), a large German producer of household appliances with a rich history
of spare part demand records. The core of the data set consists of demand
data for spare parts of household applicances, recorded yearly from 1982 to
2021. The data set is comprised of 50,000 SKUs (column "item")
with a complete product life cycle.
DOI: 10.6084/m9.figshare.25202336.v2
title: <b>Supplementary_data</b>_Bacterial_Species_SOC_Mineralization.xlsx

description: Datesets of the Spearman's correlation coefficient of decay rates of fast and slow carbon pools with the relative abundance of bacterial taxa at different taxonomic level
DOI: 10.6084/m9.figshare.28067942.v1
title: <b>Genetically Encoded Red Fluorescent Indicators for Imaging Intracellular and Extracellular Potassium Ions</b>

description: Potassium ion (K<sup>+</sup>) dynamics are vital for various biological processes. However, the limited availability of detection tools for tracking intracellular and extracellular K<sup>+</sup> has impeded a comprehensive understanding of the physiological roles of K<sup>+</sup> in intact biological systems. In this study, we developed two novel red genetically encoded potassium indicators (RGEPOs), RGEPO1 and RGEPO2, through a combination of directed evolution in <i>E. coli </i>and subsequent optimization in mammalian cells. RGEPO1, targeted to the extracellular membrane, and RGEPO2, localized in the cytoplasm, exhibited positive K<sup>+</sup>-specific fluorescence response with affinities of 3.55 mM and 14.81 mM in HEK293FT cells, respectively. We employed RGEPOs for real-time monitoring of subsecond K<sup>+</sup> dynamics in cultured neurons, astrocytes, acute brain slices, and the awake mouse in both intracellular and extracellular environments. Using RGEPOs, we were able, for the first time, to visualize intracellular and extracellular potassium transients during seizures in the brains of awake mice. Furthermore, molecular dynamics simulations provided new insights into the potassium-binding mechanisms of RGEPO1 and RGEPO2, revealing distinct K<sup>+</sup>-binding pockets and structural features. Thus, RGEPOs represent a significant advancement in potassium imaging, providing enhanced tools for real-time visualization of K<sup>+</sup> dynamics in various cell types and cellular environments.
DOI: 10.17632/ddybc4yfwf
title: Photogrammetric analysis of the Apollo 14 surface imagery

description: This set of data contains 3D model of Apollo 14 landing site based on photogrammetric analysis of approximately 65 images made by the crew during their EVAs and from the windows of the Lunar Module. For more details, see README.docx file.
DOI: 10.6084/m9.figshare.27002869.v1
title: Dataset - Development and Validation of a Novel Smartphone Application for Analyzing Joint Angles during Sit-to-Stand in the Elderly

description: The dataset contains joint angle data for the knee, hip, and trunk, collected during the sit-to-stand (STS) test. Data is sourced from both a mobile application (STS) and a 3D-motion capture system (3DMA). Files include raw data (<code>-raw</code>), machine learning-adjusted data (<code>-adjusted</code>), and final data used for analysis (without suffix). Parameters for each joint are provided to track movement during the test.
DOI: 10.6084/m9.figshare.28761560.v2
title: Simulation data of FBS-induced aggregation of <i>Capsaspora </i><i>owczarzaki</i> associated with a bioRxiv preprint 10.1101/2025.05.14.653760, "A novel model system to address the relevance of aggregation in animal origins" by G. Bercedo-Saborido, D. Stepanova, I. Ruiz-Trillo, T. Alarcón and K. Kin.

description: Simulation data of chemically induced aggregation of <i>Capsaspora owczarzaki</i> associated with the bioRxiv preprint https://doi.org/10.1101/2025.05.14.653760:Title: A novel model system to address the relevance of aggregation in animal originsAuthors: Gonzalo Bercedo-Saborido, Daria Stepanova, Iñaki Ruiz-Trillo, Tomás Alarcón and Koryu Kin<br>The code of the numerical simulations used to generate present simulation data can be found on a GitHub repository: https://github.com/daria-stepanova/Capsaspora.git. The repository also contains the necessary scripts that can be used to visualise the simulation data and reproduce the simulation videos included in the manuscript.
DOI: 10.6084/m9.figshare.7294961.v1
title: Plos One Raw Data 1.xlsx

description: Zinc enhancement of LTP through interaction with NR2B receptors in mouse hippocampus. Data for figures in Plos One paper.
DOI: 10.6084/m9.figshare.12199436.v1
title: COPD microbiome meta-analysis data (April 2020)

description: This is a re-analysis of public COPD microbiome (sputum only) and host transcriptome datasets.
DOI: 10.6084/m9.figshare.27315162.v3
title: Floor Light Exposure Index

description: We provide the FLEI calculation code and sample data that underpin our study titled "Advancing building floor-level nighttime light exposure assessment using SDGSAT-1 GLI data." .<br>The code is integrated into a custom toolbox within the ArcMap software, offering the following functionalities:<br>1. Data Import and Processing: This feature allows users to import SDGSAT-1 GLI data and perform necessary preprocessing steps to synthesize single-channel grayscale images, facilitating the computation of FLEI values.<br>2. FLEI Value Calculation: The code is capable of calculating the FLEI values for each building floor based on SDGSAT-1 GLI data, along with digital elevation models and building footprint data. Through the FLEI index, we can gain detailed insights into the nighttime light radiation exposure at each floor level, enabling a quantification and assessment of light pollution at the building floor level.<br>Supported Environment: The code operates in a Python 2.7 environment, integrated with the ArcGIS platform.
DOI: 10.6084/m9.figshare.29145173.v2
title: Quantum Tunneling Probability Simulation under Anti-Time Dynamics

description: This simulation models the quantum tunneling probability between virtual and anti-time domains using the expression Ptunnel(E)=e−2γdP_{\text{tunnel}}(E) = e^{-2\gamma d}Ptunnel​(E)=e−2γd, where γ\gammaγ is the phase decay constant and ddd is the barrier width. A 2D heatmap is generated by sweeping a range of values for γ\gammaγ and ddd, revealing how tunneling efficiency responds to changes in quantum coherence and spatial constraints. The results demonstrate that tunneling becomes significantly suppressed at higher values of γ\gammaγ and ddd, confirming the model’s prediction that anti-time transitions are phase- and distance-sensitive.
DOI: 10.6084/m9.figshare.769337.v1
title: The Timing Experiments of Libet and Grey Walter

description: The neurological experiments conducted by Benjamin Libet (1985) and Grey Walter (1993, in Dennett) provide evidence that our actions are caused by non-conscious brain events beyond our conscious awareness. Normally, we assume that our conscious choices lead us to do things. If these researchers have interpreted their evidence correctly, it may be that we lack free-will, for we could not control a non-conscious brain state. Libet however provides evidence that agents can “change their minds” just before performing some action. He felt that this was the elbow-room for free-will. But it may be incon- sistent for him to suggest this, since his evidence indicates that there is no room for conscious choice. In this paper we discuss these results and various objections to the interpretation of the work.
DOI: 10.17632/5sbyvfdyzy
title: Gender_Remote employees_OI dataset

description: This research seeks to elucidate the relationship between employee job control and organizational identity by applying the job-demands resource theory and gender role theory in the remote work literature. The concept of remote wokforce, and therefore, the full understanding of this practice and its consequences is still being determined. In order to tackle this problem, this study put out the hypothesis that gender may alter the connection and exert an impact on organizational identity (OI). Data was gathered using standardized questionnaires administered to professionals from several multinational companies in India. Hierarchical regression analyses were conducted, producing nearly identical outcomes. These studies revealed that having trust in supervisors serves as an additional factor in explaining the connection between job control and organizational identity. Furthermore, it was shown that women exhibited a notably greater correlation between job control and organizational identity. Nevertheless, the results need to be scrutinized from the perspective of the employees. There is little doubt that work flexibility rules are being adopted quickly. Work-life flexibility is anticipated to become the prevailing standard, as predicted by experts. The authors aim to elucidate the gender disparities within the remote work setting by taking into account factors such as employee identity, job control, and supervisory trust. The results given illustrate the significance of comprehending the interaction between organizational identity and job control, as well as the impact of gender. The study offers suggestions for future research and valuable insights for managers and practitione
DOI: 10.17632/s2dxrv45fr
title: EEG data for observing the video stimuli

description: This is EEG dataset collected within the research "Natural image reconstruction from brain waves: a novel visual BCI system with native feedback" https://www.biorxiv.org/content/10.1101/787101v3 Here we propose that observing visual stimuli of 5 different categories results in the different brain wave patterns decodable from noninvasive EEG. This hypothesis was tested on 17 subjects. All the data was collected by in autumn 2018, at MIPT Neurorobotics Lab, Dolgoprudny, Moscow Region, Russian Federation. The data was acquired using 128-channel MCS EEG Cap and NVX136 MCS amplifier, using NeoRec software provided by the manufacturer. The protocol included two sessions of the same video observing task. The video consisted of 117 different short clips, belonging to 5 different categories: abstract forms, waterfalls, faces, Goldberg mechanisms and speed. The clips were separated with black screen pauses of 2-3 seconds length. As for now, we cannot include the video itself due to copyright issues. We only provide screenshots of the video clips (except for category 2: faces). The detailed description can be found inside the ZIP archive.
DOI: 10.6084/m9.figshare.28428980.v1
title: Supplementary Material for: Genetic and epigenetic insights into Werner Syndrome

description: Background: 
Werner syndrome is an autosomal recessive disorder characterized by premature aging and cancer predisposition, caused by loss of function mutations in WRN gene. To date, more than 70 different pathogenic variants have been identified across the WRN locus, with an increasing number of newly reported mutations. Even if the clinical phenotypes of WS seem to be indistinguishable among the different WRN mutation types, a certain genotype/phenotype correlation has been identified, especially regarding the predisposition to certain type of malignant disease. Along this line, the knowledge of the genetic aspects related to WRN is a fascinating land still object of intensive studies.

Summary and key messages: 
This review discusses both the genetics and epigenetic regulation of WRN gene, with a special focus on the pathogenic variants that have been identified in the WRN locus across different populations. Indeed, we think that investigating these aspects is the basis starting from which is it possible to depict WRN role in aging and cancer development processes, with the final goal of opening new perspectives for future therapeutic strategies directed to the treatment not only of this syndrome, for which, to date, there is no cure, but also of many types of malignant diseases and all those disturbs related to the physiological aging.
DOI: 10.6084/m9.figshare.3856074.v5
title: A Platform of Police Reports - ICWI 2016

description: Software and data of the article published at ICWI'2016 titled<br>"A Platform to Enrich, Expand and Publish Linked Data of Police Reports".<br>
DOI: 10.17632/765f9tmfdp
title: ACTION OF HYDROGEN PEROXIDE AGAINST CYANOBACTERIAL BLOOM (Microcystis aeruginosa) IN SHRIMP AQUACULTURE

description: Shrimp aquaculture is significant for employment and food security. Uncontrolled blooms of Microcystis aeruginosa cause water deterioration and make it less suitable for shrimp welfare in shrimp farming. Its repercussions on shrimp growth and mortality led the researchers to investigate the inhibiting potential of hydrogen peroxide against cyanobacteria. However, the dangers associated with using hydrogen peroxide are primarily related to the proper doses and concentration levels, which prompted the researchers to also focus on studying the appropriate uses and doses of hydrogen peroxide and its effects on shrimp growth and its survival rate for shrimp farming because the usage of permitted hydrogen peroxide is not well-established. Testing different concentrations of hydrogen peroxide for various treatments to see its effects on the nitrification process, they measured the inhibiting potency from its uncontrolled bloom and the shrimp biomass using shrimp growth and survival rate data. The study revealed the effectiveness of hydrogen peroxide at an ideal concentration. The researchers suggest using hydrogen peroxide in shrimp aquaculture against cyanobacteria to achieve good harvests in shrimp farming. Also, to harvest more shrimp, shrimp farm operators should be aware of the various impacts of hydrogen peroxide on shrimp welfare.
DOI: 10.17632/77wffjyxdc
title: Classification_features_DR_dataset
DOI: 10.6084/m9.figshare.24471670.v1
title: Source Data

description: These are source data for figures in our work: Regional Rare Earth Element Supply and Demand Balanced with Circular Economy Strategies
DOI: 10.6084/m9.figshare.13046138.v6
title: Cross Site Scripting (XSS) Attack Dataset (2020): Generating Data for Dataset Balancing

description: Real unbalanced datasets for cross-site scripting (XSS) attacks.
DOI: 10.6084/m9.figshare.13350713.v2
title: Datasets: Global ecosystem-scale plant hydraulic traits retrieved using model-data fusion

description: The files provide the plant hydraulic trait maps associated with "Global ecosystem-scale plant hydraulic traits retrieved using model-data fusion" by Y Liu, NM Holtzman and AG Konings. <br>The Readme.txt describes the contents and variables in each file.
DOI: 10.6084/m9.figshare.1437740.v1
title: Twitter activity data for Twitter-based analysis of the dynamics of collective attention to political parties (PLoS ONE, 2015)

description: This data-set contain dynamics of Twitter activity on political parties. Please see the main paper "Twitter-based analysis of the dynamics of collective attention to political parties (PLoS ONE, 2015)" for the details.
DOI: 10.6084/m9.figshare.24790284.v3
title: Simulated Datasets (Mariam et al)

description: Simulated datasets used in "Unsupervised clustering of longitudinal clinical measurements in electronic health records" are made available here.
DOI: 10.6084/m9.figshare.28741229.v3
title: Data for "The evolution of gene functional repertoire in Amorphea: Divergent strategies across Amoebozoa, Fungi, and Metazoa"

description: Collection of data used in the study:<b><i>“The evolution of gene functional repertoire in Amorphea: Divergent strategies across Amoebozoa, Fungi, and Metazoa”</i></b>Find related code and input files descriptions in GitHub (future release)<b>Supplementary video and file information:</b><b>Supplementary Video 1. BEAP0066, encystation.</b> Video accelerated to x300 normal speed. Total time elapsed = 4.7 h.<b>Supplementary Video 2. BEAP0066, intermediate stage to encystation.</b> Video accelerated to x150 normal speed. Total time elapsed = 1.2 h.<b>Supplementary Video 3. BEAP0066, cell to cell communication.</b> Video accelerated to x150 normal speed. Total time elapsed = 1.6 h.<b>Supplementary Video 4. BEAP0066, double-amoeba.</b> Video accelerated to x150 normal speed. Total time elapsed = 5.8 h.<b>Supplementary Video 5. BEAP0066, rings in solid medium.</b> Video accelerated to x300 normal speed. Total time elapsed = 2.9 h.<b>Supplementary File 1. </b>Newick tree for Figure 1.<b>Supplementary File 2. </b>Species used in the project with source and name abbreviation..<b>Supplementary File 3. </b>Genomes used for transcriptome decontamination.<b>Supplementary File 4. </b>Differentially expressed Pfam clans per taxonomic group.<b>Supplementary File 5. </b>Newick tree for Supplementary Figure 1.<b>BEAP0066_tsa_transcriptome.fasta. </b><i>Apostamoeba explorator</i> transcriptome.<b>BEAP0079_tsa_transcriptome.fasta.</b> <i>Vannella septentrionalis</i> transcriptome.
DOI: 10.17632/99hnsgtgzt
title: Hinglish Intent and Slot Filling Dataset

description: Hinglish Language spoken language understanding model
DOI: 10.6084/m9.figshare.13292174.v1
title: Digitisation of Trzhaskovskaya Dirac-Fock Photoionisation Parameters for HAXPES Applications, Part II

description: This document provides a digitised version of the tabulated Dirac-Fock photoionisation parameters for HAXPES applications, Part II: Inner atomic shells (2019), calculated by M.B. Trzhaskovskaya and V.G. Yarzhemsky. The data from the original paper was mined, checked and deposited into a Microsoft Excel spreadsheet for easy access.
DOI: 10.6084/m9.figshare.24785172.v1
title: Supplementary Material for: Twelve-months outcomes after metabolic and bariatric surgery among youths participating in a structured preparation and follow-up program – Results of the Youth with Extreme obesity Study (YES)

description: Introduction: While invasive and associated with risks, metabolic and bariatric surgery (MBS) can promote sustained weight loss and substantial health benefits in youths with extreme obesity.The path toward informed decision making for or against MBS is poorly characterized and postoperative follow-up to assess risks and benefits is inconsistent. In youths with extreme obesity we aimed to evaluate decision making toward MBS, as well as MBS outcomes and adherence with follow-up and recommendations in the setting of a structured pre- and post- MBS.
Methods: Participants were recruited in the setting of the multicenter “Youth with Extreme Obesity Study” (YES). YES is a cohort study in adolescents and young adults aged 14–24 years with obesity (BMI≥30.0 kg/m2) who were recruited at four medical centers and one job center in Germany between 2012 and 2018. Participants at two medical centers with BMI≥35kg/m2, aged 14-24 years, and interested in pursuing MBS were included in the subproject 3 “Safety and effectiveness of weight loss surgery in adolescents with severe obesity within a structured pre- and post-surgery treatment program – an observational study” that comprised a 2-months pre- and 12-months post-MBS program. 
Results: Twenty-eight of 169 youths (17%) with BMI≥35kg/m2 were interested in MBS. Twenty-six fulfilled published eligibility criteria for MBS and participated in the structured pre- MBS preparation program. Of these, 9 participants (2 female) decided against, and 17 (n=11 females) decided for MBS (sleeve gastrectomy). The 12-months follow-up rate was high (16/17 [94%]) and all participants achieved significant weight reduction (ΔBMI:-16.1±5.6 kg/m2). Eleven of 16 participants (69%) reported taking the prescribed dietary supplements in the first year after MBS, but only five of them (31%) did so daily. In contrast to the high 12-month retention rate, follow-up after completion of the structured program was low at 24-months (9/16 [56%]) and at 36-months (5/15 [36%]) respectively. 
Conclusion: Participants demonstrated active decision making for or against MBS and high adherence with the structured pre- and 12 months post- MBS program, but participation was low thereafter. These findings endorse the need for longer-term structured post-MBS programs to capture long-term outcomes and provide adequate care in this vulnerable group at the transition to adulthood.
DOI: 10.17632/5mprf67hss
title: Data of a meta-analysis

description: Data extracted from included studies of a meta-analysis: the excess risks of mortality due to heat effects, cold effects, and heatwaves, at high and low air pollutants respectively.
DOI: 10.17632/nx8kd33dng
title: Comparative Feasibility Study of Physiological Signals fromWristband- Type Wearable Sensors to Assess Occupants’ Thermal Comfort

description: Physiological data (i.e., PPG, EDA, and SKT) from an empathica wearable biosensor and thermal preference vote during field experiments.
DOI: 10.17632/ynvngd35ht
title: Medicaid formularies for acne treatments are difficult to access and reflect inconsistent coverage policies

description: Supplemental table for study investigating acne medication coverage in the United States under Medicaid plans.