cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26384449.v1
title: <b>Jiang et al._FE_all data</b>

description: We conducted a study in six distinct wetlands that experienced long-term (&gt; 20 years) artificial drainage, with the adjacent waterlogged wetlands as a control. We analyzed plant community composition, biomass and soil P fractions, soil properties, and identified three plant P acquisition strategies based on soil acid phosphatase activity, plant P resorption efficiency, and soil arbuscular mycorrhizal fungi content.
DOI: 10.15468/dl.4yyhv8
title: Occurrence Download

description: A dataset containing 1828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sisymbrium chrysanthum Jord.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 1828 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040541-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13119709
title: Post-transcriptional regulation supports the homeostatic expression of mature RNA

description: Overview

This dataset consists of RNA sequencing data stored in HDF5 files. The data has been processed to quantify gene expression changes at the precursor RNA (preRNA) and mature RNA (matureRNA) levels across various biological conditions, including normal tissues and diseases. The dataset supports the study "Post-transcriptional regulation supports the homeostatic expression of mature RNA," providing insight into the general influence of post-transcriptional regulation (PTR) on gene expression homeostasis.

File Contents

Each HDF5 file contains the following datasets:



logFC_MatureRNA: Represents the log fold change of mature RNA expression levels between different conditions or tissues.

logCPM_MatureRNA: Represents the log counts per million for mature RNA.

PValue_MatureRNA: Represents the p-value for the statistical test performed on mature RNA expression levels.

FDR_MatureRNA: Represents the false discovery rate for the mature RNA expression levels.

logFC_preRNA: Represents the log fold change of precursor RNA expression levels between different conditions or tissues.

logCPM_preRNA: Represents the log counts per million for precursor RNA.

PValue_preRNA: Represents the p-value for the statistical test performed on precursor RNA expression levels.

FDR_preRNA: Represents the false discovery rate for the precursor RNA expression levels.

genes: A list of gene identifiers used in the study.

studies: A list of study or condition names included in the dataset.


File Naming Convention

The HDF5 files are named to reflect the filtering applied to exclude lowly expressed genes (logCPM > 5), and DESeq2 and edgeR refer to the tools used for differential expression analysis:



DESeq2_filtered_exon_intron_abnormal_conditions_all_reads.h5

edgeR_filtered_exon_intron_abnormal_conditions_all_reads.h5

DESeq2_filtered_exon_intron_gtex_tissue_all_reads.h5

edgeR_filtered_exon_intron_gtex_tissue_all_reads.h5


Example Usage

To query the HDF5 files, you can use the provided `parse_h5_file.ipynb` example notebook to parse the HDF5 files.
DOI: 10.5281/zenodo.13119710
title: Post-transcriptional regulation supports the homeostatic expression of mature RNA

description: Overview

This dataset consists of RNA sequencing data stored in HDF5 files. The data has been processed to quantify gene expression changes at the precursor RNA (preRNA) and mature RNA (matureRNA) levels across various biological conditions, including normal tissues and diseases. The dataset supports the study "Post-transcriptional regulation supports the homeostatic expression of mature RNA," providing insight into the general influence of post-transcriptional regulation (PTR) on gene expression homeostasis.

File Contents

Each HDF5 file contains the following datasets:



logFC_MatureRNA: Represents the log fold change of mature RNA expression levels between different conditions or tissues.

logCPM_MatureRNA: Represents the log counts per million for mature RNA.

PValue_MatureRNA: Represents the p-value for the statistical test performed on mature RNA expression levels.

FDR_MatureRNA: Represents the false discovery rate for the mature RNA expression levels.

logFC_preRNA: Represents the log fold change of precursor RNA expression levels between different conditions or tissues.

logCPM_preRNA: Represents the log counts per million for precursor RNA.

PValue_preRNA: Represents the p-value for the statistical test performed on precursor RNA expression levels.

FDR_preRNA: Represents the false discovery rate for the precursor RNA expression levels.

genes: A list of gene identifiers used in the study.

studies: A list of study or condition names included in the dataset.


File Naming Convention

The HDF5 files are named to reflect the filtering applied to exclude lowly expressed genes (logCPM > 5), and DESeq2 and edgeR refer to the tools used for differential expression analysis:



DESeq2_filtered_exon_intron_abnormal_conditions_all_reads.h5

edgeR_filtered_exon_intron_abnormal_conditions_all_reads.h5

DESeq2_filtered_exon_intron_gtex_tissue_all_reads.h5

edgeR_filtered_exon_intron_gtex_tissue_all_reads.h5


Example Usage

To query the HDF5 files, you can use the provided `parse_h5_file.ipynb` example notebook to parse the HDF5 files.
DOI: 10.15468/dl.zctm4y
title: Occurrence Download

description: A dataset containing 687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Prionotes R.Br."
 ]
}

 The dataset includes 687 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040542-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8u73kq
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Romerolagus diazi (Ferrari-Pérez, 1893)",
 "Year 2000-2024"
 ]
}

 The dataset includes 24 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040544-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fz4eq3
title: Occurrence Download

description: A dataset containing 3648 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.18.12.4_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3648 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040545-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26384776.v3
title: The de novo assembled chromosome-scale genome of cultivated Zizania latifolia

description: A new assembled chromosome-scale genome of Z. latifolia
DOI: 10.34740/kaggle/dsv/4740257
title: The World Lakes Dataset
DOI: 10.15468/dl.b8x7cb
title: Occurrence Download

description: A dataset containing 6105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Archeria Hook.f."
 ]
}

 The dataset includes 6105 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040546-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bycra3
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Agroiconota propinqua (Boheman, 1855)"
 ]
}

 The dataset includes 50 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040547-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.reurs3
title: Occurrence Download

description: A dataset containing 242282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sisymbrium officinale (L.) Scop.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 242282 records from 1216 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040543-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22e4c4
title: Occurrence Download

description: A dataset containing 3320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bombina bombina (Linnaeus, 1761)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 3320 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000011-250127115337998/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14745276
title: Computing focused beam transmissions of photonic crystals using angular spectrum field synthesis dataset - Part 2

description: Data set - Part 2 accompanying the publication "Computing focused beam transmissions of photonic crystals using angular spectrum field synthesis" in Optics Express 2025. Part 1  of the dataset can be found at https //doi.org/10.5281/zenodo.14724835

This data set should be extracted into Data\PlanewaveSynthesis\Results in the main data set.
DOI: 10.5281/zenodo.14745277
title: Computing focused beam transmissions of photonic crystals using angular spectrum field synthesis dataset - Part 2

description: Data set - Part 2 accompanying the publication "Computing focused beam transmissions of photonic crystals using angular spectrum field synthesis" in Optics Express 2025. Part 1  of the dataset can be found at https //doi.org/10.5281/zenodo.14724835

This data set should be extracted into Data\PlanewaveSynthesis\Results in the main data set.
DOI: 10.58063/fg86-mr84
title: NEOFIG

description: Research data of more than 400 fragments of Neolithic ceramic anthropomorphic figurines from settlement sites of Czech Republic and Lower Austria are freely opened to support wide research of this cultural phenomenon. The dataset created in cooperation with LINDAT CLARIAH contains not only photographs and a database description, but also an high-precission 3D models, photographs from optical microscopy of their surface and photographs of basic petrographic characteristics etc.
DOI: 10.15468/dl.pmdjzp
title: Occurrence Download

description: A dataset containing 3518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bombina variegata (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 3518 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000012-250127115337998/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/782d84d0ccf448d4
title: Custom collection of categorize data from Graciosa between 1 Oct 2018 and 19 Dec 2019
DOI: 10.6084/m9.figshare.28286588
title: Supplementary Data "An aberrant protamine ratio is associated with decreased H4ac levels in murine and human sperm"

description: · <b>Supplementary Table S2: </b>Overview evaluation murine testis staining.· <b>Supplementary File S1: </b>Unprocessed Mass Spectrometry Data for Human Peptide Quantification (H3 and H4)· <b>Supplementary File S2:</b> Unprocessed Mass Spectrometry Data for Mouse Peptide Quantification (H3)· <b>Supplementary File S3:</b> Unprocessed Mass Spectrometry Data for Mouse Peptide Quantification (H4)
DOI: 10.6084/m9.figshare.28286588.v1
title: Supplementary Data "An aberrant protamine ratio is associated with decreased H4ac levels in murine and human sperm"

description: · <b>Supplementary Table S2: </b>Overview evaluation murine testis staining.· <b>Supplementary File S1: </b>Unprocessed Mass Spectrometry Data for Human Peptide Quantification (H3 and H4)· <b>Supplementary File S2:</b> Unprocessed Mass Spectrometry Data for Mouse Peptide Quantification (H3)· <b>Supplementary File S3:</b> Unprocessed Mass Spectrometry Data for Mouse Peptide Quantification (H4)
DOI: 10.60656/fa2f8aba042c4033
title: Custom collection of categorize data from Villa Yacanto between 2 Oct 2018 and 29 Apr 2019
DOI: 10.60656/1dde6a7b0d234a4d
title: Custom collection of categorize data from Bucharest between 29 Apr 2019 and 6 Jan 2025
DOI: 10.15468/dl.42y8cu
title: Occurrence Download

description: A dataset containing 1510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelobates fuscus (Laurenti, 1768)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 1510 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000013-250127115337998/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/d8dfe50a04504add
title: Custom collection of categorize data from Cabauw between 28 May 2021 and 6 Jan 2025
DOI: 10.60656/273817d9525d4b06
title: Custom collection of categorize data from Chilbolton between 1 Oct 2018 and 25 Nov 2024
DOI: 10.60656/68fe65c3fdf0454d
title: Custom collection of categorize data from Cluj-Napoca between 22 May 2024 and 6 Jan 2025
DOI: 10.15468/dl.gw5rjd
title: Occurrence Download

description: A dataset containing 8017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyla arborea (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 8017 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000014-250127115337998/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14473/csda/uflqzs
title: Život během pandemie (Život k nezaplacení) 48. vlna

description: Cílem projektu Život během pandemie bylo shromažďovat data o vývoji epidemiologicky významného chování českých dospělých během pandemie nemoci covid-19 v letech 2021 až 2022 (zejména počty kontaktů, styk s nakaženým, testování, dodržování preventivních opatření, sociální aktivity, docházka na pracoviště, symptomy onemocnění). Sledovány byly také změny v pracovní aktivitě dotazovaných, ekonomická situace domácností a míry duševního zdraví s cílem vyhodnocovat dopady epidemie na uvedené oblasti života. Dále byly zjišťovány postoje veřejnosti k vládním opatřením, testování a očkování. K základní sadě socio-demografických proměnných dotázaných v první vlně šetření byly v jednotlivých vlnách postupně doplňovány socioekonomické charakteristiky respondentů a domácností, včetně retrospektivního zjišťování stavu před začátkem epidemie. Součástí šetření byly rovněž ad hoc moduly týkající témat relevantních v době pandemie, jako je distanční výuka nebo práce z domova.
Od podzimu 2021 bylo šetření postupně doplňováno o moduly reagující na závažné aktuální společenské krize a výzvy (energetická krize, konflikt na Ukrajině). Na jaře 2022 byl naopak oslaben epidemiologický modul. Od dubna 2022 bylo pokračování výzkumu zajišťováno ve spolupráci s Českým rozhlasem jako projekt Česko 2022: Život k nezaplacení s důrazem na dopady inflace na hospodaření domácností. Od října 2022 se v souvislosti s napojením sběru na Národní institut pro výzkum socioekonomických dopadů nemocí a systémových rizik (SYRI) šetření rozšiřuje o tematické moduly vztahující se ke zdravotním a jiným celospolečenským ohrožením.
Na obsahu šetření spolupracovaly převážně výzkumná společnost PAQ Research a iniciativa IDEA AntiCovid (do jara 2022). Od října 2022 připravují část otázek výzkumné týmy v projektu NPO Národní institut pro výzkum socioekonomických dopadů nemocí a systémových rizik (SYRI).
description: DATA A INFORMACE K TOMUTO VÝZKUMU JSOU ZATÍM PŘÍSTUPNÁ POUZE PRO VÝZKUMNÍKY PROJEKTU SYRI. PO UKONČENÍ TOHOTO PROJEKTU (KONEC ROKU 2025) BUDOU DATA A VŠECHNY DALŠÍ DOKUMENTY ZVEŘEJNĚNY PRO OSTATNÍ UŽIVATELE DATOVÉHO ARCHIVU.
DOI: 10.60656/620fb42a41294332
title: Custom collection of categorize data from Davos between 10 Feb and 21 Mar 2019
DOI: 10.60656/cfe950af7b594892
title: Custom collection of categorize data from Eriswil between 18 Feb 2022 and 5 Mar 2024
DOI: 10.3334/cdiac/otg.vos_sa_agulhas_ii_2013
title: Partial pressure (or fugacity) of carbon dioxide, salinity and other variables collected from Surface underway observations using Barometric pressure sensor, Carbon dioxide (CO2) gas analyzer and other instruments from S.A. AGULHAS II in the Gulf of Guinea, North Atlantic Ocean and South Atlantic Ocean from 2012-12-06 to 2014-02-11 (NCEI Accession 0160546)

description: This dataset includes Surface underway, chemical, meteorological and physical data collected from S.A. AGULHAS II in the Gulf of Guinea, North Atlantic Ocean and South Atlantic Ocean from 2012-12-06 to 2014-02-11. These data include BAROMETRIC PRESSURE, Partial pressure (or fugacity) of carbon dioxide - atmosphere, Partial pressure (or fugacity) of carbon dioxide - water and SALINITY. The instruments used to collect these data include Barometric pressure sensor and Carbon dioxide (CO2) gas analyzer.

These data were collected by Pedro M. S. Monteiro of CSIR SOCCO as part of the VOS_SA_Agulhas_II_91AH20121206, VOS_SA_Agulhas_II_91AH20130904 and VOS_SA_Agulhas_II_91AH20131201 dataset. CDIAC associated the following cruise ID(s) with this dataset: 91AH20121206, 91AH20130904 and 91AH20131201
DOI: 10.3334/cdiac/otg.vos_sa_agulhas_ii_2015
title: Partial pressure (or fugacity) of carbon dioxide, salinity and other variables collected from Surface underway observations using Barometric pressure sensor, Carbon dioxide (CO2) gas analyzer and other instruments from S.A. AGULHAS II in the Gulf of Guinea, Indian Ocean and others from 2014-12-05 to 2016-02-10 (NCEI Accession 0160549)

description: This dataset includes Surface underway, chemical, meteorological and physical data collected from S.A. AGULHAS II in the Gulf of Guinea, Indian Ocean, North Atlantic Ocean and South Atlantic Ocean from 2014-12-05 to 2016-02-10. These data include BAROMETRIC PRESSURE, Partial pressure (or fugacity) of carbon dioxide - atmosphere, Partial pressure (or fugacity) of carbon dioxide - water and SALINITY. The instruments used to collect these data include Barometric pressure sensor, Carbon dioxide (CO2) gas analyzer and Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement.

These data were collected by Pedro M. S. Monteiro and Warren R. Joubert of CSIR SOCCO as part of the VOS_SA_Agulhas_II_91AH20141205, VOS_SA_Agulhas_II_91AH20150722, VOS_SA_Agulhas_II_91AH20150902 and VOS_SA_Agulhas_II_91AH20151205 dataset. CDIAC associated the following cruise ID(s) with this dataset: 91AH20141205, 91AH20150722 and 91AH20150902
DOI: 10.60656/297842f607a34dde
title: Custom collection of categorize data from Galați between 28 Feb 2022 and 31 Dec 2024
DOI: 10.3334/cdiac/otg.vos_sa_agulhas_ii_2016
title: Partial pressure (or fugacity) of carbon dioxide, salinity and other variables collected from Surface underway observations using Barometric pressure sensor, Carbon dioxide (CO2) gas analyzer and other instruments from S.A. AGULHAS II in the South Atlantic Ocean from 2016-07-15 to 2016-07-27 (NCEI Accession 0160557)

description: This dataset includes Surface underway, chemical, meteorological and physical data collected from S.A. AGULHAS II in the South Atlantic Ocean from 2016-07-15 to 2016-07-27. These data include BAROMETRIC PRESSURE, Partial pressure (or fugacity) of carbon dioxide - atmosphere, Partial pressure (or fugacity) of carbon dioxide - water and SALINITY. The instruments used to collect these data include Barometric pressure sensor, Carbon dioxide (CO2) gas analyzer and Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement.

These data were collected by Pedro M. S. Monteiro and Warren R. Joubert of CSIR SOCCO as part of the VOS_SA_Agulhas_II_91AH20160715 dataset. CDIAC associated the following cruise ID(s) with this dataset: 91AH20160715
DOI: 10.60656/e638859f1e89408e
title: Custom collection of categorize data from Granada between 1 Oct 2018 and 31 Dec 2024
DOI: 10.15468/dl.na9kjc
title: Occurrence Download

description: A dataset containing 10066 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rana dalmatina Fitzinger, 1838",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 10066 records from 272 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000015-250127115337998/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/8fe24a89c48b49f8
title: Custom collection of categorize data from Hyytiälä between 1 Oct 2018 and 6 Jan 2025