cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/dkm-6hq-wys
title: †Strophomena Blainville, 1824

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wed-k65-q1z
title: †Toxochasmops (Schmidtops) maximus Schmidt, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gyq-gve-sr4
title: Sophora L.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/htb-hxr-5lc
title: Conichnus conicus Männil

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/shp-tyb-hsa
title: Palaeofavosites juuru Klaaman

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sj0-xj1-9e0
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kaj-s9d-37w
title: Conichnus conicus Männil

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qvl-wzn-r7z
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1d5-68n-5dl
title: †Strophomena Blainville, 1824

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qef-dan-e2s
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/864-wmr-8qb
title: †Rhynchonella Fischer de Waldheim, 1809

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/scq-8v0-qhk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p5n-7bl-1j5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6z9-4dh-1bf
title: †Obolus Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x1w-epa-yyk
title: †Obolus Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5yp-0xp-2ds
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ez4-7r1-qww
title: †Obolus Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8at-y8c-j38
title: †Eotomaria Ulrich & Scoffield, 1897

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ddc-3fw-s5v
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.10890475
title: MoCA Dataset EU/JP

description: Cognitive function time and scale.
DOI: 10.3535/3bj-qb1-nhh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6vb-0fa-nyt
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.14865075
title: Antarctic-wide surface meltwater data

description: Shapefile and raster data of surface meltwater across the whole of the Antarctic Ice Sheet. The data relates to results published in Tuckett et al.

Four datasets are included in this repository:

1) Annual (per austral summer melt season) 'maximum extent' raster data of surface meltwater. Files are in geotiff format, and have a pixel resolution of 30 m. These data  are comprised of monthly data stacked on top of each other, across the melt season.

2) Annual 'Maximum extent' shapefile data of surface meltwater.

3) Annual recurrence frequency of surface mettwater, in raster form. This is a single geotiff file, with each pixel value indicating the number of years that surface meltwater was present in that location between 2006-2021. 

4) Monthly shapefile data of surface meltwater.

 

Please contact Pete Tuckett (pete.tuckett@york.ac.uk, petetuckett47@gmail.com) for any queries.

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Shapefiles come with the following attribute data for each individual surface meltwater polygon:



dateStart = Start date for the time window that surface meltwater was mapped over.

dateEnd = End date for the time window.

numImages = The number of Landsat tiles that were used in the mapping process for the time window.

windowDays = The length of the time window, in days.

lakeArea = The area of the surface meltwater polygon.

centroidX = X-value of the central point of the meltwater polygon (in Antarctic Polar Stereographic, EPSG:3031)

centroidY = Y-value of the central point of the meltwater polygon (in Antarctic Polar Stereographic, EPSG:3031)

tile = The ID number of the tile the polygon originated from during the mapping process - see methods of Tuckett et al.

Grounded = The grounding status of the polygon, based on the Depoorter et al. (2013) grounding line dataset. 1 = Grounded; 0 = Floating.

lakeElev = Elevation of the polygon centroid, based on the Reference Elevation Model of Antarctica (REMA).

Slope = Slope of the polygon centroid, based on the Reference Elevation Model of Antarctica (REMA).

GL_Distance = Distance of the polygon from the grounding line, based on the Depoorter et al. (2013) grounding line.

Velocity = Average ice velocity at the polygon centroid, based on the MEASURES 450 m resolution dataset.

Rock_Distance = Distance of the meltwater polygon to the nearest bedrock, based on the ice mask dataset generated during the mapping procedure.
DOI: 10.3535/334-6jc-8pf
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gmm-jrv-4s6
title: Serpentine

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.14898470
title: Dataset: Machine Learning–Accelerated Prediction of Amorphization Enthalpy in Ionic Compounds

description: Description

This dataset contains amorphization enthalpy data for a variety of ionic compounds, evaluated using both Density Functional Theory (DFT) and a Graph Neural Network (GNN) model. The data is presented in two CSV files, each with key information about the chemical formulas, material IDs, and corresponding amorphization enthalpies.

Files

1. dft_enthalpy_data.csv

This file contains the following columns:



Formula: The chemical formula of the compound.

material_id: The unique ID of the material in the Materials Project database.

Amorphization Enthalpy (eV): The amorphization enthalpy of the compound, evaluated using Density Functional Theory (DFT).


2. GNN_enthalpy_data.csv

This file contains the following columns:



Formula: The chemical formula of the compound.

material_id: The unique ID of the material in the Materials Project database.

Amorphization Enthalpy (eV): The amorphization enthalpy of the compound, evaluated using a Graph Neural Network (GNN) model.
DOI: 10.5281/zenodo.14946848
title: Population prevalence of the major thyroid cancer-associated syndromes. Supplementary data.

description: This is the supplementary data for the manuscript "Population prevalence of the major thyroid cancer-associated syndromes" that is being reviewed by the Journal of Clinical Endocrinology and Metabolism. The file contains ClinVar pathogenic or likely pathogenic variants for three genes, RET, PTEN, and APC, found in two biobanks: All of Us Research Program and UK Biobank.
DOI: 10.5281/zenodo.14963943
title: Quantitative analysis values of CML and CEL for each of the 8 mice (µg/g)
DOI: 10.3535/7zk-t3h-hff
title: †Philhedra Koken, 1889

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c7r-n23-pa6
title: †Lingulella Salter, 1866

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l2q-bwe-w9e
title: Greywacke

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qml-91a-sys
title: †Philhedra Koken, 1889

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.10890503
title: GDS Dataset EU/JP

description: Geriatric depression scale.
DOI: 10.5281/zenodo.12580519
title: Plastic additive qualitative analysis - Plastic reference materials

description:  Clusters of tabular data (with metadata including variable labels, code labels and definition of missing value) reporting plastic additive profile in the reference materials with ID P3, P4, P5, P6, P8 and P9. Quality assurance measures were in place during analysis including calibration curves, blank measurements and use of validated methods.
DOI: 10.3535/jgc-hjb-aka
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t6r-82h-z6d
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.10890457
title: EQ 5D (European Quality of Life 5 dimensions) Dataset EU/JP

description: Quality of life Likert-Scale.
DOI: 10.15468/dl.ejhbys
title: Occurrence Download

description: A dataset containing 2875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Costa Rica, Guatemala, Belize, Nicaragua, Panama, Honduras, El Salvador)",
 "TaxonKey is Ateles geoffroyi Kuhl, 1820",
 "Year 1981-2025"
 ]
}

 The dataset includes 2875 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009227-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/110-qwe-yta
title: †Maclurites Lesueur, 1818

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dlj-wmx-jkx
title: Nieszkowskia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.14609759
title: Dataset of article "Decision support for the identification of testate amoebae in microscopy images to detect peat presence in horticultural substrates"

description: This data set was used in the following article: "Decision support for the identification of testate amoebae in microscopy images to detect peat presence in horticultural substrates" by Serge Zaugg1, Camille Vögeli2, Lena Märki1, Clément Duckert2 and Edward Mitchell2. 1Swiss Federal Institute of Metrology METAS. 2Laboratory of Soil Biodiversity, University of Neuchâtel.

Data overview

The data is in the zipped folder testate_amoebae_in_peat. yolov5pytorch. This data is in YOLOv5 format which is compatible with YOLOv8 models. Images have sizes 1728 x 1296, 1728 x 1080, or 1728 x 976 pixels. The training set comes from microscopy images of 33 substrate samples and the validation set from 16 independent samples. The latter can be used to assess generalization performance. Data in the validation folder is referred to as test set in the article. The first seven digits of the files contain the sample ID. As an overview, we provide two large PNG images that show the content of the bounding boxes organized by class.

Data structure

testate_amoebae_in_peat.yolov5pytorch

|-- data.yaml   (link between numeric class codes and class names)

|-- train

    |-- images  (5928 images, pre-augmented see section 2.5)

    |-- labels  (5928 text files with labels)                       

|-- valid

    |-- images  (2415 images)

    |-- labels  (2415 text files with labels)

 

Funding Statement

This study was commissioned by the Federal Office for the Environment (FOEN), CH-3003 Bern. The FOEN is an agency of the Federal Department of the Environment, Transport, Energy and Communications (DETEC). Disclaimer: This study was prepared under contract to the Federal Office for the Environment (FOEN). The contractor bears sole responsibility for the content.
DOI: 10.3535/f55-8rg-qer
title: †Protochonetes Muir-Wood, 1962

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/prm-1xv-7jd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.10890430
title: eHEALS scale (eHEALTH literacy) Dataset EU/JP

description: E-Health literacy Likert-Scale.
DOI: 10.3535/6b7-kg4-dry
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9dp-h4d-jxp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.10892985
title: Data from: Factors affecting temporal use of feeding sites by wolves in the central Apennines, Italy

description: Although we refrain from sharing actual Global Positioning System coordinates of studied wolves in our study area due to ther sensitive nature within a National Park, the database we share includes a list of 60 feeding sites, comprising both kill (n=17) and scavenging (n=43) sites used by wolves during winter months (2008-2011) in the Abruzzo Lazio and Molise National Parck, central Italy. We used these data to investigate the effect of ecological, environmental, and anthropogenic factors on the temporal patterns of feeding site use by wolves.
description: Funding provided by: Wildlife Conservation SocietyCrossref Funder Registry ID: https://ror.org/01xnsst08Award Number:
description: Feeding sites used by wolves have been detected through field investigations in winter months of clusters of GPS locations from 8 GPS-collared wolves belonging to three different social categories (i.e., pack members, breeding pairs, and solitary floaters). Environmental (i.e., orography) and anthropogenic (i.e. distance to roads and settlements) varibles for each feeding site were obtained in a GIS environment about the feeding site centroid, and were successively used in GLMMs to assess their effect on (a) handling time (i.e., time spent by wolves at the feeding site), (b) recurrency of use (i.e., number of visits at a given feeding site), and (c) nocturnality of use (i.e., the proportion of noctural GPS location at a site).
DOI: 10.3535/fts-ygy-b5h
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hkn-nq4-xte
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.10890419
title: ATDPA-5 Dataset EU/JP

description: Assistive technology device predisposition assessment Likert-Scale-
DOI: 10.5281/zenodo.10890468
title: Short Physical Performance Battery Dataset EU/JP

description: Physical activity classification time and scale.
DOI: 10.5281/zenodo.10890491
title: UCLA Loneliness Scale Dataset EU/JP

description: Loneliness Likert-Scale.
DOI: 10.5281/zenodo.7740674
title: Greenspace and bluespace quality indicators

description: Data extracted from literature on green and blue space quality indicators. Protocol for data extraction found here: <pre>https://doi.org/10.5281/zenodo.6594870</pre> Funded by Rural and Environment Science and Analytical Services Division (JHI-C6-1)
DOI: 10.5281/zenodo.7740675
title: Greenspace and bluespace quality indicators

description: Data extracted from literature on green and blue space quality indicators. Protocol for data extraction found here:


https://doi.org/10.5281/zenodo.6594870


Funded by Rural and Environment Science and Analytical Services Division (JHI-C6-1)
DOI: 10.3535/lhc-r8l-f62
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n3e-zsv-66m
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.10890509
title: SUS Dataset EU/JP

description: System usability scale.
DOI: 10.5281/zenodo.14614079
title: Cloud cover frequency over land in the period 2000-2022

description: Package of maps describing the database of annual cloud coverage frequency calculated over land from MODIS-Terra and MODIS-Aqua Collection 6.1 data (using, respectively, MOD10A1 and MYD10A1 level 3 products) in the temporal period 2000 (MODIS-Terra)/2002 (MODIS-Aqua) - 2022. Each raster (.tif) covers the entire globe and is referenced in WGS84 datum. The spatial resolution is, approximately, of 500 m. Along the .tif map, three auxiliary data files are annexed: .tfw for georeferentiation; .ovr for pyramids; .xml for main statistics.
DOI: 10.3535/96r-p59-a03
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/flh-14t-56r
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.11302275
title: Atlas of the immune system development in the fetal blood

description: Unprecedent information have been obtained to understand the ontogeny of immune cells in lymph organs during early fetal development. However, little is known about immune cells and host factors in the blood. Here we generated the first comprehensive atlas of blood cells and proteins throughout the fetal development using the multiomics approaches. The temporal changes of blood cells play important roles in development and maturation of the fetal immune system. Some proteins in the blood are excellently correlated with gestation weeks. The gradual increases of CDR3 lengths over time through multiple pathwyas markedly increase the diversity of TCR and BCR repertoires. Our comprehensive atlas is highly valuable for understanding the development of fetal immune system and studying the disorders that associated with fetal immune system.

 

Cell types, distributions and origins in early fetal tissues have been well studied using the single cell analysis approaches in recent years (1). Unprecedent data have been accumulated to comprehend the immune cell development in great details (2, 3). This has led to a much better understanding of ontogeny of immune cells in lymph organs and peripheral tissues during early fetal development. It is well established that yolk sac and the aorta gonad mesonephros (AGM) are the sources of immune cells, which subsequently seed into the liver, thymus and bone merrow, and finally reach to the peripheral organs (1). However, previous studies have focused on development of immune cells in the early stage (< 20 postconceptional weeks; pcw) of fetuses (1). The analyses were often limited by the small number of the cells available and only mRNA transcripts from single cells have been analyzed. The blood plays a critical role by transferring immune cells back and forth between lymph organs and peripheral tissues to ensure the normal development of the immune system. However, little is known about the status of the immune cells and host protein factors in the blood during the fetal development. 

 

Here, we performed multiomics analyses of individual blood cells and proteins as well as cell functions of blood cells after stimulation throughout the fetal development. These results allow us to comprehensively and systematically investigate the immune system in the fetal blood from the time when the blood circulation system become complete at 12 pcw to the near full term of pregnancy (39 pcw). These data together allowed us to generate a detailed atlas of immune system development in the fetal blood.

Additional Note: We have provided a data visualization map, which can be accessed via the following link: Fetal single Cell  Visualization Map  Web
DOI: 10.5281/zenodo.15052667
title: OLAMUR Work Package 4 in-situ CTD and AUV data
DOI: 10.5281/zenodo.15056128
title: Charge of a volcanic ash particle at Sakurajima volcano, November 2023

description: This repositery contains a single Excel file with the time and voltage recorded by voltash
DOI: 10.3535/1rc-b1c-b6b
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ez2-bg3-b41
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.10890731
title: UEQ Dataset EU/JP

description: User experience questionnaire Likert-Scale.
DOI: 10.3535/79b-nlj-dz8
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l1r-wrt-lbe
title: †Hormotoma Salter, 1859

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j37-fnf-3sb
title: Cyathopodium Verrill, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r1w-417-7gl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cj6-wt2-60e
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yam-78e-9s4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e14-8f1-1tz
title: †Schizotreta Kutorga, 1848

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/st7-3hq-4s1
title: †Murchisonia d'Archiac & Verneuil, 1841

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/asx-ln3-528
title: †Pachydictya Ulrich, 1882

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xtk-w5b-35e
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3p6-ar2-r7a
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ypb-rg2-ebc
title: †Conchidium Oehlert, 1887

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k85-4g8-va3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rhz-w5h-vd6
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bwl-na4-fy9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hc2-vxs-bk5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9q6-ave-b0h
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w8x-16a-0sx
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.