cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7245811
title: Antarctic Rock Viral Catalog

description: Viral catalog associated with:<br> <br> Highly diverse and unknown viruses may enhance Antarctic endoliths adaptability<br> <br> Analysis, code, intermediate and supporting files are archived here: https://zenodo.org/record/7374327<br> <br> While this archive contains:<br> <strong>(1) predicted_viral_sequences.fa.gz </strong>- compressed fasta file of all 101,085 predicted viral sequences<br> <strong>(2) vOTUs.fa.gz </strong>- compressed fasta file of all 76,985 95% similarity vOTUs<br> <strong>(3) vOTU_info.csv </strong>- csv containing metadata associated with each viral sequence and linking viral sequences to vOTUs
DOI: 10.5281/zenodo.7245810
title: Antarctic Rock Viral Catalog

description: Viral catalog associated with:<br> <br> Highly diverse and unknown viruses may enhance Antarctic endoliths adaptability<br> <br> Analysis, code, intermediate and supporting files are archived here: https://zenodo.org/record/7374327<br> <br> While this archive contains:<br> <strong>(1) predicted_viral_sequences.fa.gz </strong>- compressed fasta file of all 101,085 predicted viral sequences<br> <strong>(2) vOTUs.fa.gz </strong>- compressed fasta file of all 76,985 95% similarity vOTUs<br> <strong>(3) vOTU_info.csv </strong>- csv containing metadata associated with each viral sequence and linking viral sequences to vOTUs
DOI: 10.5066/p92ml1ec
title: Fish species abundance data for selected streams of the Potomac River basin

description: This Data Release contains data on fish species abundance for selected streams of the Potomac River basin in eastern North America. This dataset supports analysis of karst streams in the Chesapeake Bay headwaters region and was funded by USGS Chesapeake Bay studies.
DOI: 10.6084/m9.figshare.3761562.v2409
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5517/ccdc.csd.cc2c2d84
title: CCDC 2177045: Experimental Crystal Structure Determination

description: Related Article: Duanxiu Li, Jiong Li, Zongwu Deng, Hailu Zhang|2022|Journal of Drug Delivery Science and Technology|78|103934|doi:10.1016/j.jddst.2022.103934
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c2d95
title: CCDC 2177046: Experimental Crystal Structure Determination

description: Related Article: Duanxiu Li, Jiong Li, Zongwu Deng, Hailu Zhang|2022|Journal of Drug Delivery Science and Technology|78|103934|doi:10.1016/j.jddst.2022.103934
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7374336
title: Data for DESI Publication DESI-2022-0160: DESI Survey Validation Spectra Reveal an Increasing Fraction of Recently Quenched Galaxies at z~1

description: This folder contains all the data on figures for DESI Publication DESI-2022-0160, which is about to be sent to final reading.
DOI: 10.5281/zenodo.7374335
title: Data for DESI Publication DESI-2022-0160: DESI Survey Validation Spectra Reveal an Increasing Fraction of Recently Quenched Galaxies at z~1

description: This folder contains all the data on figures for DESI Publication DESI-2022-0160, which is about to be sent to final reading.
DOI: 10.5517/ccdc.csd.cc2d9qm2
title: CCDC 2213884: Experimental Crystal Structure Determination

description: Related Article: M. Bujak, A. Olejniczak, M. Podsiadło|2022|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|78|868|doi:10.1107/S2052520622010149
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d9qn3
title: CCDC 2213885: Experimental Crystal Structure Determination

description: Related Article: M. Bujak, A. Olejniczak, M. Podsiadło|2022|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|78|868|doi:10.1107/S2052520622010149
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d9qp4
title: CCDC 2213886: Experimental Crystal Structure Determination

description: Related Article: M. Bujak, A. Olejniczak, M. Podsiadło|2022|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|78|868|doi:10.1107/S2052520622010149
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27zybj
title: CCDC 2085318: Experimental Crystal Structure Determination

description: Related Article: K. Inoue, S. Matsumoto, M. Kumasaki|2022|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|78|876|doi:10.1107/S2052520622010204
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3886/e140662v1-130912
title: Data and Code for: The Effect of High-Tech Clusters on the Productivity of Top Inventors

description: The high-tech sector is increasingly concentrated in a small number of cities. I use longitudinal data on 109,846 inventors to quantify the productivity advantages of Silicon-Valley style clusters. <br>I find significant productivity gains from geographical agglomeration. When an inventor moves to a city with a larger cluster of inventors in the same field, she experiences a significant increase in the number and quality of patents produced. A case study based on an exogenous shock to Rochester’s high tech cluster confirms the magnitude of agglomeration benefits. The agglomeration of inventors generates sizable gains in the aggregate number of patents produced in the US.
DOI: 10.21227/ya12-j913
title: TbImages: a smear microscopy image dataset to support the development of automated bacilli detection in the diagnosis of tuberculosis

description: TbImages - An image database of conventional sputum smear light field microscopy for tuberculosis In order to contribute to the development of automatic methods for the detection of bacilli, TBimages is an image dataset composed of two subsets: TbImages_SS1 contains 10 images per field, of different focal depths, and aims to support the definition of autofocus metrics and also the development of extended focus imaging methods to facilitate the detection of bacilli in smear microscopy imaging.   TbImages_SS2  aims to support the development of automatic bacilli detection. Materials: Sputum smear microscopy slides from 12 patients prepared using the Kinyoun acid-fast stain and counterstained with methylene blue solution. The sputum samples are from patients suspected of pulmonary TB. Kinyoun stain was the method of staining used. It is similar to the Ziehl-Neelsen stain but does not require heating unlike the Ziehl–Neelsen stain.  Image acquisition - An acquisition workstation was set up (a digital camera, a light microscope, and a computer). The digital camera used was a Canon PowerShot A640, which couples with a 10-megapixel CCD imager sensor with a 4x optical zoom. The images have 2816 x 2112 pixels and 24 bits per pixel (RGB images). The microscope used was a Zeiss Axioshop 40. It employed a magnification of 100x and numerical aperture of 1.25. TbImages_SS1: This subset contains 40 stacks of 10 microscope field images where the images of the stack were acquired at different focal depths. The fifth image in a stack is the one with the best focus. This dataset contains 400 images. TbImages_SS2: The images from this dataset were taken from 12 slides, 10 fields per slide, totaling 120 images. Annotated images (Gold Standard): In all 120 images of the TbImage_SS2 subset, objects of interest were identified and delimited within a geometric shape by a trained technician. A true bacillus was circled, an agglomerated bacillus was surrounded by a rectangle and an object whose image focus or geometry did not allow a clear identification as a bacillus (doubtful bacillus ) was surrounded by a polygon. In both databases, according to the background content, and density of bacilli in the images have been grouped as belonging to high background content or low background content, and high and low bacilli density, respectively. More information: www.tbimages.ufam.edu.br
DOI: 10.5281/zenodo.7374401
title: Dados para questões Q13 (Regressão Logística Ordinal): teste de atitudes tese Rakel B. de M.Viana

description: Dados para questões Q13 (teste de atitudes tese Rakel B. de M.Viana) dados em escala Likert de 0 a 10 a partir de slider.
DOI: 10.5281/zenodo.7374400
title: Dados para questões Q13 (Regressão Logística Ordinal): teste de atitudes tese Rakel B. de M.Viana

description: Dados para questões Q13 (teste de atitudes tese Rakel B. de M.Viana) dados em escala Likert de 0 a 10 a partir de slider.
DOI: 10.5281/zenodo.7374379
title: Dados para questões Q12 (Regressão Logística Ordinal): teste de atitudes tese Rakel B. de M.Viana

description: Dados para questões Q12 (teste de atitudes tese Rakel B. de M.Viana) questões em escala Likert de 4 pontos.
DOI: 10.5281/zenodo.7374378
title: Dados para questões Q12 (Regressão Logística Ordinal): teste de atitudes tese Rakel B. de M.Viana

description: Dados para questões Q12 (teste de atitudes tese Rakel B. de M.Viana) questões em escala Likert de 4 pontos.
DOI: 10.5281/zenodo.7374363
title: Dados para questões Q11 (Regressão Logística Ordinal): teste de atitudes tese Rakel B. de M.Viana

description: Dados para questões Q11 (teste de atitudes tese Rakel B. de M.Viana) respostas em escalas Likert de 5 pontos.
DOI: 10.5281/zenodo.7374362
title: Dados para questões Q11 (Regressão Logística Ordinal): teste de atitudes tese Rakel B. de M.Viana

description: Dados para questões Q11 (teste de atitudes tese Rakel B. de M.Viana) respostas em escalas Likert de 5 pontos.
DOI: 10.26093/cds/vizier.36670059
title: LP 890-9 (TOI-4306) light curves and RVs

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Two temperate super-Earths transiting a nearby late-type M dwarf.' (bibcode: 2022A&A...667A..59D)
DOI: 10.26093/cds/vizier.36670063
title: RV Survey for Planets around Young stars

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Radial Velocity Survey for Planets around Young stars. (RVSPY). Target characterisation and high-cadence survey.' (bibcode: 2022A&A...667A..63Z)
DOI: 10.26093/cds/vizier.36670074
title: Distance catalogue for AGB stars

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Distance estimates for AGB stars from parallax measurements.' (bibcode: 2022A&A...667A..74A)
DOI: 10.26093/cds/vizier.51500129
title: Swift UVOT stars survey. II. RR Lyrae in M3 and M15

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The Swift UVOT stars survey. II. RR Lyrae stars in M3 and M15.' (bibcode: 2015AJ....150..129S)
DOI: 10.26093/cds/vizier.51640049
title: Identifying Exoplanets with Deep Learning. IV.

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Identifying Exoplanets with Deep Learning. IV. Removing Stellar Activity Signals from Radial Velocity Measurements Using Neural Networks.' (bibcode: 2022AJ....164...49D)
DOI: 10.5281/zenodo.7374371
title: Supplementary Tables 1 2 3 for AJP-GLP

description: <strong>Supplementary Table 1. Differentially expressed genes in the livers of male CC mice fed a HF/HS diet as compared to control diet fed CC mice.</strong> <strong>Supplementary Table 2. Correlation of gene expression and osmium tetroxide staining in the liver of CC mice fed a HF/HS diet and control diet (Pearson coefficient r ≥ |0.5|).</strong> <strong>Supplementary Table 3. Differentially methylated CpG sites in the livers of male CC mice fed a HF/HS diet as compared to control (p &lt; 0.05).</strong>
DOI: 10.5281/zenodo.7374370
title: Supplementary Tables 1 2 3 for AJP-GLP

description: <strong>Supplementary Table 1. Differentially expressed genes in the livers of male CC mice fed a HF/HS diet as compared to control diet fed CC mice.</strong> <strong>Supplementary Table 2. Correlation of gene expression and osmium tetroxide staining in the liver of CC mice fed a HF/HS diet and control diet (Pearson coefficient r ≥ |0.5|).</strong> <strong>Supplementary Table 3. Differentially methylated CpG sites in the livers of male CC mice fed a HF/HS diet as compared to control (p &lt; 0.05).</strong>
DOI: 10.5281/zenodo.7374444
title: Dataset: Relevance and usability evaluation in a data portal for biodiversity research

description: Supplementary material for a relevance and usability evaluation in a data portal for biodiversity research. Data portal: GFBio (https://www.gfbio.org) Evaluation time: February 2016 (at that time the search index consisted of ~ 2 Mio datasets) Eight domain experts rated the Top25 search results of 16 provided search questions on a 7-point-Likert scale from 0 (irrelevant) to 6 (highly relevant). Afterwards, we asked the users to provide and rate up to two own queries. The users also rated 28 statements in a subsequent usability evaluation on a 5-point Likert scale from 'completely disagree' to 'highly agree'. For some statements, only binary ratings were given.
DOI: 10.5281/zenodo.7374443
title: Dataset: Relevance and usability evaluation in a data portal for biodiversity research

description: Supplementary material for a relevance and usability evaluation in a data portal for biodiversity research. Data portal: GFBio (https://www.gfbio.org) Evaluation time: February 2016 (at that time the search index consisted of ~ 2 Mio datasets) Eight domain experts rated the Top25 search results of 16 provided search questions on a 7-point-Likert scale from 0 (irrelevant) to 6 (highly relevant). Afterwards, we asked the users to provide and rate up to two own queries. The users also rated 28 statements in a subsequent usability evaluation on a 5-point Likert scale from 'completely disagree' to 'highly agree'. For some statements, only binary ratings were given.
DOI: 10.5517/ccdc.csd.cc2dczf6
title: CCDC 2216048: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Dirk Harmsen, Roland Fröhlich, Gerhard Erker|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dd140
title: CCDC 2216101: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Thorsten Dreier, Roland Fröhlich, Gerhard Erker|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dd2jf
title: CCDC 2216144: Experimental Crystal Structure Determination

description: Related Article: Constantin G. Daniliuc, Dirk Harmsen, Roland Fröhlich, Gerhard Erker|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6082/uchicago.5102
title: Data for "Arctic sea ice loss weakens Northern Hemisphere summertime storminess due to ocean coupling"
DOI: 10.22002/d1.1426
title: Data used for figure generation in PhD thesis "The Molecular Biophysics of Evolutionary and Physiological Adaptation"

description: This folder contains all data sets used in the analysis and figure generation presented in my PhD thesis. Please see the associated `README.md` file for more information.
DOI: 10.22002/d1.228
title: Flow Cytometry CSV Files for "An allosteric theory of transcription factor induction."

description: These data correspond to the comma separated value files converted from the original flow cytometry standard (.fcs)  files generated from  the experimental measurement of fluorescence on a MiltenyiBiotec MACSQuant flow cytometer. These files were passed through a processing pipeline to quantify the fold-change in gene expression due to action by the Lac repressor. These data are separated by the operator we examined. Eight different strains were measured for each dataset. Please see the main text or the paper website at http://rpgroup-pboc.github.io/mwc_induction for more information.
description: Related Publication:
An allosteric theory of transcription factor induction

Manuel Razo-Mejia Caltech

Stephanie L. Barnes Caltech

Nathan M. Belliveau Caltech

Griffin Chure Caltech

Tal Einav Caltech

Rob Phillips Caltech

https://doi.org/10.1101/111013
eng
DOI: 10.6084/m9.figshare.21637529
title: Australia - All medicines database - 03 Feb 2021

description: This dataset includes all the results pulled from The Therapeutic Goods Administration's eBusiness Service and Australian Register of Therapeutic Goods that include one of the many essential medicines (as defined by the World Health Organisation). This data has not been cleaned.
DOI: 10.6084/m9.figshare.21637529.v1
title: Australia - All medicines database - 03 Feb 2021

description: This dataset includes all the results pulled from The Therapeutic Goods Administration's eBusiness Service and Australian Register of Therapeutic Goods that include one of the many essential medicines (as defined by the World Health Organisation). This data has not been cleaned.
DOI: 10.22002/d1.1951
title: Supplementary tables for Elena Perry's PhD thesis

description: This dataset contains supplementary tables associated with Elena Perry's PhD thesis. Please see the thesis (available under "Related Identifiers") for table legends and complete information on the associated experimental methods and data analysis.
DOI: 10.5281/zenodo.7305578
title: GeneWiki subset created with WDSub at Biohackathon 2022

description: Subset of Wikidata obtained using this Shape Expression: https://github.com/kg-subsetting/datasets-biohackathon2022/blob/main/GeneWiki/GeneWiki.shex And the wdsub tool version 0.0.28: https://github.com/weso/wdsub The input dump is: wikidata-20180115-all And the dumpformat is JSON
DOI: 10.6073/pasta/01f02f5f417ca5fe6ab4d66a1325a63c
title: Colored dissolved organic matter (CDOM) absorbance from lagoon, ocean, and river sites along the Alaska Beaufort Sea coast, 2021-ongoing

description: Multiple water types (river, lagoon, ocean) from the North Slope of Alaska and nearshore Beaufort Sea are sampled seasonally by the Beaufort Lagoon Ecosystems LTER (BLE LTER) Core Program to investigate biogeochemical linkages between terrestrial, lagoon, and open ocean ecosystems. Water samples from multiple depths are collected during full ice cover (April), ice break-up (mid-June to early July), and open water (late July and August) periods, filtered, and analyzed for light absorption spectra within 24 hours of collection. Wavelength-specific light absorption coefficients are reported between 200 and 600 nanometers. The data is organized in "long" or "tidy" format, with columns of station, date, wavelength, and absorption. Please see included MakeColumnsAsWavelengths.R, MakeColumnsAsDates.R, and ReshapeDataInExcel.txt for some common ways to reorganize the table for further CDOM analysis. In 2022, this dataset was updated with 2021 data, while all of 2019 was removed (please see previous revision of this dataset for 2019 CDOM values). For users who may have used 2019 data from this dataset, there are additional files to inform decisions going forward. "BLE_LTER_CDOM_2019_sample_flags.csv" lists which 2019 samples are entirely unreliable, versus usable with caution. "BLE_LTER_CDOM_2021_blank_mean_sd_absorptions.csv" lists mean and standard deviations at each wavelength from all blanks taken in 2021; this is meant to give info on the instruments used and will not be updated further. Please see the methods section for more information on 2019 data.
DOI: 10.13020/91yh-x581
title: Simulation data supporting Toward A-fs-meV Resolution in Electron Microscopy: Systematic Simulation of the Temporal Spread of Single-Electron Packets
DOI: 10.5281/zenodo.7374265
title: IMAGE FUV data from 2000-08-28 07:24:12 to 2000-08-28 16:37:46

description: Far-Ultraviolet (FUV) images from the three cameras on board the Imager for Magnetopause-to-Aurora Global Exploration (IMAGE) mission between 07:24:12 and 16:37:46 on 28 August 2000. Original image files can be accessed at https://spdf.gsfc.nasa.gov/pub/data/image/fuv. The idl files provided here are created from UDF files using the IMAGE mission's original fuview3 software. The fuvpy package is then used to remove background emissions and produced netcdf files with original and corrected images.
DOI: 10.5281/zenodo.7374264
title: IMAGE FUV data from 2000-08-28 07:24:12 to 2000-08-28 16:37:46

description: Far-Ultraviolet (FUV) images from the three cameras on board the Imager for Magnetopause-to-Aurora Global Exploration (IMAGE) mission between 07:24:12 and 16:37:46 on 28 August 2000. Original image files can be accessed at https://spdf.gsfc.nasa.gov/pub/data/image/fuv. The idl files provided here are created from UDF files using the IMAGE mission's original fuview3 software. The fuvpy package is then used to remove background emissions and produced netcdf files with original and corrected images.
DOI: 10.6084/m9.figshare.21637559
title: E$$ENTIAL MEDICINE$ Challenge Database_Pilot_29 Nov 2022

description: This is a pilot of the database that conbined all the data collected from the News Flash, Price Hike$ and Cirlce of LIfe challanges of E$$ENTIAL MEDICINE$. <br> It was designed by students at the University of Sydney.