cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25573/serc.21295716
title: Dataset: Sediment depth and accretion shape belowground mangrove carbon stocks across a range of climatic and geologic settings.

description: We assessed the limits of mangrove sedimentary carbon storage by sampling sediments in diverse mangrove environments across four geographic areas: the volcanic Galapagos, the arid Baja Peninsula, and the geologically and climatically distinct Caribbean and Pacific coasts of Panama. At 80 sites across these areas, we quantified the organic carbon density, sampled with depth, of entire sediment columns. Most sites were cored in several locations, generally across an intertidal transect. Sediment depth, bulk density, and organic carbon density were measured with depth in each core. Some cores also had one or more sample depth radiocarbon dated, allowing for estimates of long-term accretion rates. Depth-integrated carbon stocks are highly variable, from &lt; 17 to &gt; 1700 MgCorg ha-1.
DOI: 10.4121/871d6c3a-cf1a-44f9-865a-6da842bd2f27.v1
title: Applying ISO Standards to Organ-on-Chip Designs

description: In this presentation, a set of design guidelines that condense ISO 22916:2022 "Microfluidic devices — Interoperability requirements for dimensions, connections and initial device classification" into a 6-step design process is shown. This material is aimed at developers in the organ-on-chip field as well as microfluidic engineers in general. An A4 flyer version of the presentation designed for information dissemination is also included, with additional information aimed at organ-on-chip developers.
DOI: 10.5281/zenodo.8139447
title: Advanced in vitro hemocompatibility assessment of biomaterials using a new flow incubation system

description: We present a new setup that enables standardized whole blood incubation of biomedical materials under flow. A blood volume of 2 ml is recirculated over test surfaces in a custom-made parallel plate incubation system to determine the activation of hemostasis and inflammation. Controlled physiological shear rates between 125 s<sup>-1</sup> and 1,250 s<sup>-1</sup> and minimized contact to air are combined with a natural-like pumping process. A unique feature of this setup allows tracing adhesion of blood cells to test surfaces microscopically <em>in situ</em>. Validation testing was performed in comparison to previously applied whole blood incubation methodologies.
DOI: 10.5281/zenodo.8139446
title: Advanced in vitro hemocompatibility assessment of biomaterials using a new flow incubation system

description: We present a new setup that enables standardized whole blood incubation of biomedical materials under flow. A blood volume of 2 ml is recirculated over test surfaces in a custom-made parallel plate incubation system to determine the activation of hemostasis and inflammation. Controlled physiological shear rates between 125 s<sup>-1</sup> and 1,250 s<sup>-1</sup> and minimized contact to air are combined with a natural-like pumping process. A unique feature of this setup allows tracing adhesion of blood cells to test surfaces microscopically <em>in situ</em>. Validation testing was performed in comparison to previously applied whole blood incubation methodologies.
DOI: 10.5281/zenodo.8139271
title: Spontaneous Unsteadiness and Sorting in Pyroclastic Density Currents and their Deposits - Data

description: Dataset accompanying Spontaneous Unsteadiness and Sorting in Pyroclastic Density Currents and their Deposits, in <em>Particulate Gravity Currents in the Environment.</em> Raw experiment images and videos for selected runs. Run list included as csv file, with links to externally hosted videos.
DOI: 10.5281/zenodo.8139270
title: Spontaneous Unsteadiness and Sorting in Pyroclastic Density Currents and their Deposits - Data

description: Dataset accompanying Spontaneous Unsteadiness and Sorting in Pyroclastic Density Currents and their Deposits, in <em>Particulate Gravity Currents in the Environment.</em> Raw experiment images and videos for selected runs. Run list included as csv file, with links to externally hosted videos.
DOI: 10.15129/fd83f191-2dc1-4839-adbb-684bac5ecd0c
title: Data for "Toatie --- Functional Hardware Description with Dependent Types"

description: This repository contains all of the source files the "toatie" hardware description language and its compiler. The dataset includes a reproducible build environment using nix, the compiler sources, standard libraries, example circuits, and test scripts. This is an extension of Tiny Idris --- introduced by Edwin Brady at SPLV20. Our main additions to support hardware description include erasure/irrelevance of non-synthesisable terms, staging for circuit generators, deriving bit representations, and the synthesis itself.
DOI: 10.6084/m9.figshare.23357393
title: Supplementary Material for: Hepatic progenitor cells in the form of ductular structures within a GIST liver metastasis: supporting a putative role in the hepatic metastatic niche

description: Recent studies have highlighted the presence of hepatic progenitor cells (HPCs) in metastatic liver carcinomas. We provide further evidence of this phenomenon, presenting a case of a gastrointestinal stromal tumour (GIST) liver metastasis with evidence of intra- and peritumoral HPC. A 64-year-old man presented with a gastric mass diagnosed as a high-risk KIT-mutated GIST. The patient was treated with Imatinib, recurring five years later with a liver mass. Liver biopsy disclosed a GIST metastasis, hallmarked by a proliferation of ductular structures without cytological atypia intermingled with the tumour cells, with a CK7/CK19/CD56-positive immunophenotype and rare CD44 positivity. The patient underwent liver resection, and the same ductular structures were present in the tumour interior and at its periphery. We document for the time the presence of HPC in the form of ductular structures in a GIST liver metastasis, further supporting their role in the liver metastatic niche.
DOI: 10.6084/m9.figshare.23357393.v1
title: Supplementary Material for: Hepatic progenitor cells in the form of ductular structures within a GIST liver metastasis: supporting a putative role in the hepatic metastatic niche

description: Recent studies have highlighted the presence of hepatic progenitor cells (HPCs) in metastatic liver carcinomas. We provide further evidence of this phenomenon, presenting a case of a gastrointestinal stromal tumour (GIST) liver metastasis with evidence of intra- and peritumoral HPC. A 64-year-old man presented with a gastric mass diagnosed as a high-risk KIT-mutated GIST. The patient was treated with Imatinib, recurring five years later with a liver mass. Liver biopsy disclosed a GIST metastasis, hallmarked by a proliferation of ductular structures without cytological atypia intermingled with the tumour cells, with a CK7/CK19/CD56-positive immunophenotype and rare CD44 positivity. The patient underwent liver resection, and the same ductular structures were present in the tumour interior and at its periphery. We document for the time the presence of HPC in the form of ductular structures in a GIST liver metastasis, further supporting their role in the liver metastatic niche.
DOI: 10.5281/zenodo.8139506
title: Online Ranking System Effects on Perceived Fairness

description: Dataset for Online Ranking System Effects on Perceived Fairness
DOI: 10.5281/zenodo.8139505
title: Online Ranking System Effects on Perceived Fairness

description: Dataset for Online Ranking System Effects on Perceived Fairness
DOI: 10.5281/zenodo.8139445
title: OCEL Chess Pieces Production

description: This dataset has been created by transforming the dataset https://doi.org/10.5281/zenodo.7419655 to an object-centric setting, i.e., the recorded event data is stored in the OCEL event log format (see https://ocel-standard.org/).
description: {"references": ["10.5281/zenodo.7419655"]}
DOI: 10.5281/zenodo.8139444
title: OCEL Chess Pieces Production

description: This dataset has been created by transforming the dataset https://doi.org/10.5281/zenodo.7419655 to an object-centric setting, i.e., the recorded event data is stored in the OCEL event log format (see https://ocel-standard.org/).
description: {"references": ["10.5281/zenodo.7419655"]}
DOI: 10.25345/c5z892r40
title: MassIVE MSV000092417 - MS2 data from Phytoplankton using ZIC-HILIC column
title: MS/MS data of zwitterionic metabolites of phytoplankton: Amphidinium carterae CCMP1314, Alexandrium tamarense CCMP1771, Karenia brevis CCMP2229, Lingulodinium polyedra CCMP1738, Prymnesium parvum CCAP946/6, Tetraselmis striata RCC131, Dunaliella salina RCC3579, Prorocentrum minimum CCMP2233. Using zwitterionic separation protocol according to our previously published paper Azizah & Pohnert, 2022: https://doi.org/10.3390/md20110727
DOI: 10.34740/kaggle/dsv/5977842
title: starbucks_bakery_nutrition
DOI: 10.5281/zenodo.8137161
title: DATASET WITH CLASSIFICATION OF ACCOUNTS THAT DISCLOSE SCIENTIFIC ARTICLES ON TWITTER BETWEEN BOT, HUMAN AND CYBORG THROUGH BOTOMETER

description: This dataset is the result of research that analyzed accounts that tweeted scientific articles in order to classify them as bots, humans or cyborgs through Botometer. Three articles were selected among those with the highest scores on the Altmetric platform and a sample of 18,316 Twitter user accounts were classified.
DOI: 10.5281/zenodo.8137160
title: DATASET WITH CLASSIFICATION OF ACCOUNTS THAT DISCLOSE SCIENTIFIC ARTICLES ON TWITTER BETWEEN BOT, HUMAN AND CYBORG THROUGH BOTOMETER

description: This dataset is the result of research that analyzed accounts that tweeted scientific articles in order to classify them as bots, humans or cyborgs through Botometer. Three articles were selected among those with the highest scores on the Altmetric platform and a sample of 18,316 Twitter user accounts were classified.
DOI: 10.57754/fdat.53rsv-r8r76
title: Data from sampling campaign in river Ammer in 2018

description: This data set contains measured concentrations of pharmaceuticals, ions and discharge in River Ammer, Germany, June, 2018. These data have been analyzed by applying a mass balance approach and a monte carlo simulation (Glaser et al., Temporal and spatial variable in-stream attenuation of selected pharmeceuticals, Sci total environ, submitted).
description: Keywords:

pharmaceuticals,
river,
transport,
mass balance,
fate
DOI: 10.57754/fdat.j154g-hq236
title: Measured soil hydraulic and soil physical properties, estimated soil hydraulic model parameters, and identifier of dataset splits for analyses

description: This dataset contains a compilation of laboratory measured soil hydrologic and physical properties, estimated soil hydraulic property model parameters and uncertainties, as well as information on dataset splits as used in Weber et al. (2020) Pedotransfer function for the Brunswick soil hydraulic property model and comparison to the van Genuchten-Mualem model, Water Resources Research. The estimation of the best parameter set was done by using a Differential Evolution algorithm and the uncertainty quantification was done by applying a converged Markov-Chain Monte Carlo sampler. From these parameter sets, pedotransfer functions were established.
description: Keyword:

soil hydraulic properties,
pedotransfer function,
soil water retention,
hydraulic conductivity
DOI: 10.6084/m9.figshare.22243669.v2
title: Reassessing the causal connection between satDNA dynamics and chromosomal evolution in <em>Ctenomys </em>(Rodentia, Ctenomyidae): Unveiling the overlooked importance of the Y chromosome

description: This dataset corresponds to the manuscript: "Reassessing the causal connection between satDNA dynamics and chromosomal evolution in <em>Ctenomys </em>(Rodentia, Ctenomyidae): Unveiling the overlooked importance of the Y chromosome". <br> Items: <strong>Supplementary File 1 (.xlsx)</strong>. Individual and grouped RPCS copy number, indicating locality, sex, and specimen number. Comparisons between males and females (mean, SD, subtraction and relative amount). <br> <strong>Supplementary File 2 (.fas).</strong> Alignment of three partial mtDNA loci: COI (1-693), cytb (694-1772), CR (1773-2178). Separate sequences for each locus are available in Genbank (Accession numbers JX275502-JX275655 and KT818638-KT818684). <br> infile.nex.con. Phylogenetic tree based on cytb, COI and CR partial sequences of the <em>Ctenomys </em>Corrientes group.
DOI: 10.6084/m9.figshare.23635986
title: Directed evolution unlocks oxygen reactivity for a nicotine degrading flavoenzyme

description: Data included in the publication "Directed evolution unlocks oxygen reactivity for a nicotine degrading flavoenzyme"
DOI: 10.5281/zenodo.7930906
title: Chadox HIV vaccine data

description: FASTq files from analysis of candidate HIV vaccines
DOI: 10.5281/zenodo.7930905
title: Chadox HIV vaccine data

description: FASTq files from analysis of candidate HIV vaccines
DOI: 10.57754/fdat.qpynt-tay55
title: Direct Push Color Logging in the Ammer Floodplain - Data and MATLAB codes

description: This data set contains the direct-push field data (spring 2019), lab data (2018 and 2019) and matlab codes used to visualize the results presented in the publication Klingler et al. 2020, Direct-push color logging images spatial heterogeneity of organic carbon in floodplain sediments, Journal of Geophysical Research: Biogeochemistry.
description: Keywords:

sediment color,
direct-push,
total organic carbon,
natural organic matter
DOI: 10.3886/e192425
title: CJA Release Assessment - NYC Arraignments from 2009 to 2015

description: The dataset describes roughly one million arraignments, which occurred in New York City between 2009 and 2015, and which were continued at the time of arraignment. The dataset is comprised of administrative data collected by city, state, and non-profit agencies, as well as variable fields derived from that administrative data, including information like: <br><br>details about the arrest (e.g., the type of charge for which a defendant was arrested); details about the defendant’s criminal history at the time of the arraignment (e.g., whether the defendant had ever failed to appear in court before); and subsequent case outcomes (e.g., whether the defendant returned to court throughout the pretrial period). The dataset also includes basic demographic information about defendants (for instance race and ethnicity), so that the performance of the predictive model could be tested with respect to equity. The complete list of all variable fields in the public dataset can be found in the attached codebook.
DOI: 10.3886/e192425v1
title: CJA Release Assessment - NYC Arraignments from 2009 to 2015

description: The dataset describes roughly one million arraignments, which occurred in New York City between 2009 and 2015, and which were continued at the time of arraignment. The dataset is comprised of administrative data collected by city, state, and non-profit agencies, as well as variable fields derived from that administrative data, including information like: <br><br>details about the arrest (e.g., the type of charge for which a defendant was arrested); details about the defendant’s criminal history at the time of the arraignment (e.g., whether the defendant had ever failed to appear in court before); and subsequent case outcomes (e.g., whether the defendant returned to court throughout the pretrial period). The dataset also includes basic demographic information about defendants (for instance race and ethnicity), so that the performance of the predictive model could be tested with respect to equity. The complete list of all variable fields in the public dataset can be found in the attached codebook.
DOI: 10.5281/zenodo.8139524
title: Root mutualistic fungi tailor the induction of direct and indirect antiherbivore defense strategies to enhance plant resistance

description: GCMS raw data in netCDF format for the manuscript "Root mutualistic fungi tailor the induction of direct and indirect antiherbivore defense strategies to enhance plant resistance" Mutualistic microbes can trigger plant defenses against herbivores. Little is known about how microbes orchestrate multiple induced defense strategies that may trade-off against each other. We investigated how two root mutualistic fungi trigger simultaneously direct and indirect antiherbivore-defenses, and the regulatory mechanisms involved
DOI: 10.5281/zenodo.8139523
title: Root mutualistic fungi tailor the induction of direct and indirect antiherbivore defense strategies to enhance plant resistance

description: GCMS raw data in netCDF format for the manuscript "Root mutualistic fungi tailor the induction of direct and indirect antiherbivore defense strategies to enhance plant resistance" Mutualistic microbes can trigger plant defenses against herbivores. Little is known about how microbes orchestrate multiple induced defense strategies that may trade-off against each other. We investigated how two root mutualistic fungi trigger simultaneously direct and indirect antiherbivore-defenses, and the regulatory mechanisms involved
DOI: 10.57754/fdat.ba8nz-dn379
title: Hydrogeologic Site Characterization Dataset (2017-2020) of Ammer Valley Floodplain in SW Germany

description: This data is from the hydrogeologic site characterization of the Ammer floodplain, near Unterjesingen, Germany and is summarized in the following publication: Structural Controls on the Hydrogeological Functioning of a Floodplain. Included within the datasets are: 1) drill core data and monitoring well description; 2) hydraulic head and hydrochemistry measurements from groundwater monitoring well network spanning the time period from May 2017 until May 2020; 3) aquifer parameters estimated from well tests; 4) hydrochemistry data from surface water and springs in/near the floodplain.
description: Keywords:

groundwater,
conceptual model,
floodplain,
sedimentary architecture,
biogeochemical turnover
DOI: 10.5281/zenodo.8137013
title: Dataset of sound field simulations above finite absorbers

description: This dataset contains the training, validation, and testing datasets for the preprint "Sound absorption estimation of finite porous samples with deep residual learning." The sound fields are generated with a simplified boundary element method (BEM) of a baffled porous layer on a rigid backing using the Delany–Bazley–Miki model. There are 330 thousand simulations, out of which 300 are for training and validation sets (80/20 %), 15 for an interpolation test set, and another 15 for an extrapolation test set. The paper uses the training and validation datasets to train the neural networks. The network's performance against unseen data is assessed with the test sets. More details on using this data can be found in the GitHub repo: https://github.com/eliaszea/finite-absorber-ML.
DOI: 10.5281/zenodo.8137012
title: Dataset of sound field simulations above finite absorbers

description: The authors' documentation on the training, validation, and testing datasets in their paper "<em>Sound absorption estimation of finite porous samples with deep residual learning</em>." The sound fields are generated with a simplified boundary element method (BEM) of a baffled porous layer on a rigid backing using the Delany–Bazley–Miki model. Further information on the contents of this database can be found in <em>documentation.pdf</em>. More details on the models and reproduction of results of the paper using this database can be found in the GitHub repo: https://github.com/eliaszea/finite-absorber-ML.
DOI: 10.5281/zenodo.8138620
title: Dataset of sound field simulations above finite absorbers

description: The authors' documentation on the training, validation, and testing datasets in their paper "<em>Sound absorption estimation of finite porous samples with deep residual learning</em>." Goal: predict sound absorption coefficients from array measurements above finite porous materials. In effect, the model learns relevant features from edge-diffracted sound fields to predict absorption as if the sample were infinite. Results: Using the present datasets, the method is shown to perform at least as well as the two-microphone method in the higher frequency range (weaker contribution of edge diffraction to the sound field) More details on the models, and reproduction of results can be found in the GitHub repo: https://github.com/eliaszea/finite-absorber-ML.
DOI: 10.5281/zenodo.8139588
title: Dataset of sound field simulations above finite absorbers

description: The authors' documentation on the training, validation, and testing datasets in their paper "<em>Sound absorption estimation of finite porous samples with deep residual learning</em>." The sound fields are generated with a simplified boundary element method (BEM) of a baffled porous layer on a rigid backing using the Delany–Bazley–Miki model. Further information on the contents of this database can be found in <em>documentation.pdf</em>. More details on the models and reproduction of results of the paper using this database can be found in the GitHub repo: https://github.com/eliaszea/finite-absorber-ML.
DOI: 10.5519/qd.1cig5di6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (6 records)
DOI: 10.57754/fdat.1phn1-34x72
title: Environmental tracers in river Ammer (sampling in 2018)

description: This data set contains measured concentrations of environmental tracers such as ions, pharmaceuticals and discharge in River Ammer, Germany, June, 2018 under application of two different sampling scenarios (Lagrangian Sampling and grab samples). Additionally, concentrations of environmental tracers in groundwater are presented.
description: Keywords:

surface water quality,
Lagrangian sampling,
radon,
carbamazepine,
wastewater treatment plant,
groundwater inflow
DOI: 10.5517/ccdc.csd.cc270w38
title: CCDC 2056419: Experimental Crystal Structure Determination

description: Related Article: Xiaohua Cheng, Sijia Yue, Runan Chen, Jun Yin, Bin-Bin Cui|2022|Inorg.Chem.|61|15475|doi:10.1021/acs.inorgchem.2c02085
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6nmv
title: CCDC 2151357: Experimental Crystal Structure Determination

description: Related Article: Karam B. Idrees, Zhao Li, Haomiao Xie, Kent O. Kirlikovali, Masoud Kazem-Rostami, Xingjie Wang, Xijun Wang, Tzu-Yi Tai, Timur Islamoglu, J. Fraser Stoddart, Randall Q. Snurr, Omar K. Farha|2022|J.Am.Chem.Soc.|144|12212|doi:10.1021/jacs.2c03114
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bdcsx
title: CCDC 2156849: Experimental Crystal Structure Determination

description: Related Article: Jia-Jing Zhong, Shun-Ze Zhan, Yanzhou Li, You-Shi Guo, Seik Weng Ng, Yi-Fei Deng, Dan Li|2022|Inorg.Chem.|61|10624|doi:10.1021/acs.inorgchem.2c01478
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.