cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8342318.v1
title: Additional file 15: of Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation

description: Table S13. T1_FDP versus T0 Top annotated up-regulated contigs. LogFC = Log fold change, logCPM = log counts per million, F = F statistic, FDR = false discovery rate. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8342321.v1
title: Additional file 8: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S8. List of resistance genes used for building model for prediction of class B MBLs and list of previously characterized genes used for clustering. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8342312.v1
title: Additional file 14: of Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation

description: Table S12. T1_Fed versus T0 Top annotated down-regulated contigs. LogFC = Log fold change, logCPM = log counts per million, F = F statistic, FDR = false discovery rate. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8342306
title: Additional file 13: of Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation

description: Table S11. T1_Fed versus T0 Top annotated up-regulated contigs. LogFC = Log fold change, logCPM = log counts per million, F = F statistic, FDR = false discovery rate. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8342315.v1
title: Additional file 7: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S7. List of resistance genes in the Resqu database. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.8342303
title: Additional file 5: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S5. List of known and putative novel ARGs detected in class 1 integron gene cassettes. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.8342300
title: Additional file 12: of Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation

description: Table S10. FDP versus Fed Top annotated down-regulated contigs. LogFC = Log fold change, logCPM = log counts per million, F = F statistic, FDR = false discovery rate. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8342303.v1
title: Additional file 5: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S5. List of known and putative novel ARGs detected in class 1 integron gene cassettes. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.8342306.v1
title: Additional file 13: of Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation

description: Table S11. T1_Fed versus T0 Top annotated up-regulated contigs. LogFC = Log fold change, logCPM = log counts per million, F = F statistic, FDR = false discovery rate. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8342294
title: Additional file 4: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S4. List of genes detected in class 1 integron gene cassettes. (XLSX 2620 kb)
DOI: 10.6084/m9.figshare.8342297
title: Additional file 11: of Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation

description: Table S9. FDP versus Fed Top annotated up-regulated contigs. LogFC = Log fold change, logCPM = log counts per million, F = F statistic, FDR = false discovery rate. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8342294.v1
title: Additional file 4: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S4. List of genes detected in class 1 integron gene cassettes. (XLSX 2620 kb)
DOI: 10.6084/m9.figshare.8342297.v1
title: Additional file 11: of Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation

description: Table S9. FDP versus Fed Top annotated up-regulated contigs. LogFC = Log fold change, logCPM = log counts per million, F = F statistic, FDR = false discovery rate. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8342300.v1
title: Additional file 12: of Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation

description: Table S10. FDP versus Fed Top annotated down-regulated contigs. LogFC = Log fold change, logCPM = log counts per million, F = F statistic, FDR = false discovery rate. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8342288
title: Additional file 3: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S3. List of bacterial genera detected in our study and their relative abundance as a percentage of all 16S rRNA gene reads. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.8342282
title: Additional file 2: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S2. List of virulence genes detected in our study and their relative abundance to 16S rRNA genes. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8342288.v1
title: Additional file 3: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S3. List of bacterial genera detected in our study and their relative abundance as a percentage of all 16S rRNA gene reads. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.8342282.v1
title: Additional file 2: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S2. List of virulence genes detected in our study and their relative abundance to 16S rRNA genes. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8342279
title: Additional file 1: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S1. Relative abundance (resistance gene copies per 16S rRNA gene) of antibiotic resistance genes and mobile genetic elements detected in our study. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8342276
title: MOESM3 of An expanded biomarker panel for the detection of prostate cancer from urine DNA

description: Additional file 3. The file contains the marker data updated to include all 32 markers. The patients were sorted and assigned new numbers that are unrelated to the alphanumeric code used as the identifier when the clinical samples were collected.
DOI: 10.6084/m9.figshare.8342279.v1
title: Additional file 1: of Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

description: Table S1. Relative abundance (resistance gene copies per 16S rRNA gene) of antibiotic resistance genes and mobile genetic elements detected in our study. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8342264
title: Additional file 3: of What is the impact of user affect on motor learning in virtual environments after stroke? A scoping review

description: List of studies included in summative content analysis (nâ =â 50). (XLSX 63 kb)
DOI: 10.6084/m9.figshare.8342276.v1
title: MOESM3 of An expanded biomarker panel for the detection of prostate cancer from urine DNA

description: Additional file 3. The file contains the marker data updated to include all 32 markers. The patients were sorted and assigned new numbers that are unrelated to the alphanumeric code used as the identifier when the clinical samples were collected.
DOI: 10.6084/m9.figshare.8342264.v1
title: Additional file 3: of What is the impact of user affect on motor learning in virtual environments after stroke? A scoping review

description: List of studies included in summative content analysis (nâ =â 50). (XLSX 63 kb)
DOI: 10.6084/m9.figshare.8342252
title: Additional file 2: of What is the impact of user affect on motor learning in virtual environments after stroke? A scoping review

description: List of studies included in synthesis (nâ =â 155). (XLSX 31 kb)
DOI: 10.6084/m9.figshare.8342252.v1
title: Additional file 2: of What is the impact of user affect on motor learning in virtual environments after stroke? A scoping review

description: List of studies included in synthesis (nâ =â 155). (XLSX 31 kb)
DOI: 10.6084/m9.figshare.8342240
title: MOESM1 of Identification of novel pathogenic MSH2 mutation and new DNA repair genes variants: investigation of a Tunisian Lynch syndrome family with discordant twins

description: Additional file 1. Targeted DNA repair genes panel list (87 genes).
DOI: 10.6084/m9.figshare.8342240.v1
title: MOESM1 of Identification of novel pathogenic MSH2 mutation and new DNA repair genes variants: investigation of a Tunisian Lynch syndrome family with discordant twins

description: Additional file 1. Targeted DNA repair genes panel list (87 genes).
DOI: 10.6084/m9.figshare.8342228
title: Additional file 2: of Factors influencing the attention to home storage of medicines in China

description: Study Data. All the data used in our study. (XLS 170 kb)
DOI: 10.6084/m9.figshare.8342228.v1
title: Additional file 2: of Factors influencing the attention to home storage of medicines in China

description: Study Data. All the data used in our study. (XLS 170 kb)
DOI: 10.6084/m9.figshare.8342162
title: Additional file 7: of Placental microRNAs in pregnancies with early onset intrauterine growth restriction and preeclampsia: potential impact on gene expression and pathophysiology

description: Table S5. Identified candidate gene targets based on inverse correlation analysis including correlation coefficients and gene fold changes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8342156
title: Additional file 6: of Placental microRNAs in pregnancies with early onset intrauterine growth restriction and preeclampsia: potential impact on gene expression and pathophysiology

description: Table S4. List of genes common between: PE Only and PE + IUGR, PE Only and IUGR Only and PE + IUGR and IUGR Only. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8342162.v1
title: Additional file 7: of Placental microRNAs in pregnancies with early onset intrauterine growth restriction and preeclampsia: potential impact on gene expression and pathophysiology

description: Table S5. Identified candidate gene targets based on inverse correlation analysis including correlation coefficients and gene fold changes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8342156.v1
title: Additional file 6: of Placental microRNAs in pregnancies with early onset intrauterine growth restriction and preeclampsia: potential impact on gene expression and pathophysiology

description: Table S4. List of genes common between: PE Only and PE + IUGR, PE Only and IUGR Only and PE + IUGR and IUGR Only. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8342138
title: Additional file 4: of Placental microRNAs in pregnancies with early onset intrauterine growth restriction and preeclampsia: potential impact on gene expression and pathophysiology

description: Table S3. List of differentially expressed genes in each disease group compared to gestational age-matched controls including significance values from each program and direction of expression. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.8342129
title: Additional file 3: of Placental microRNAs in pregnancies with early onset intrauterine growth restriction and preeclampsia: potential impact on gene expression and pathophysiology

description: Table S2. List of differentially expressed microRNAs in each disease group compared to gestational age-matched controls including significance values from each program and direction of expression. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8342138.v1
title: Additional file 4: of Placental microRNAs in pregnancies with early onset intrauterine growth restriction and preeclampsia: potential impact on gene expression and pathophysiology

description: Table S3. List of differentially expressed genes in each disease group compared to gestational age-matched controls including significance values from each program and direction of expression. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.8342129.v1
title: Additional file 3: of Placental microRNAs in pregnancies with early onset intrauterine growth restriction and preeclampsia: potential impact on gene expression and pathophysiology

description: Table S2. List of differentially expressed microRNAs in each disease group compared to gestational age-matched controls including significance values from each program and direction of expression. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8342117
title: Additional file 9 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Flux distributions under modified proton transport mechanism between M, BS and S. Flux solutions obtained when proton transport mechanism temporarily modified in the multi-tissue model. Two flux solutions provided: proton and 3-PGA/DHAP shuttle allowed between M and BS and when both exchanges were blocked. (XLS 68 kb)
DOI: 10.6084/m9.figshare.8342114
title: Additional file 8 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Flux distributions for the production of cellulose, hemi-cellulose and lignin. Flux solutions obtained using the multi-tissue model for the production of cellulose, hemi-cellulose and lignin in stem. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.8342114.v1
title: Additional file 8 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Flux distributions for the production of cellulose, hemi-cellulose and lignin. Flux solutions obtained using the multi-tissue model for the production of cellulose, hemi-cellulose and lignin in stem. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.8342117.v1
title: Additional file 9 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Flux distributions under modified proton transport mechanism between M, BS and S. Flux solutions obtained when proton transport mechanism temporarily modified in the multi-tissue model. Two flux solutions provided: proton and 3-PGA/DHAP shuttle allowed between M and BS and when both exchanges were blocked. (XLS 68 kb)
DOI: 10.6084/m9.figshare.8342108
title: Additional file 7 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Reactions activated in stem. Different set of reactions in stem for the production of cellulose, hemi-cellulose and lignin. These sets represent the reactions associated with the genes (Additional file 6) which are common and/or unique to different biomass production. (XLS 43 kb)
DOI: 10.6084/m9.figshare.8342105
title: Additional file 6 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Genes expressed in stem. Different set of genes expressed in stem for the production of cellulose, hemi-cellulose and lignin. These sets represent the genes which are common and/or unique to different biomass production. Phytozome (phytozome.jgi.doe.gov/pz/portal.html) database identifiers are included for these genes. (XLS 135 kb)
DOI: 10.6084/m9.figshare.8342099
title: Additional file 5 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Biomass production using Sv3376 for different N sources. Flux distributions for the production of one gram leaf biomass i) with P B and both nitrate and ammonium, ii) with P B constrained and ammonium as sole N source and iii) with P B constrained and nitrate as sole N source. (XLSX 14, 565 kb)
DOI: 10.6084/m9.figshare.8342108.v1
title: Additional file 7 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Reactions activated in stem. Different set of reactions in stem for the production of cellulose, hemi-cellulose and lignin. These sets represent the reactions associated with the genes (Additional file 6) which are common and/or unique to different biomass production. (XLS 43 kb)
DOI: 10.6084/m9.figshare.8342105.v1
title: Additional file 6 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Genes expressed in stem. Different set of genes expressed in stem for the production of cellulose, hemi-cellulose and lignin. These sets represent the genes which are common and/or unique to different biomass production. Phytozome (phytozome.jgi.doe.gov/pz/portal.html) database identifiers are included for these genes. (XLS 135 kb)
DOI: 10.6084/m9.figshare.8342096
title: Additional file 4 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Leaf biomass composition. Biomass proportions used to simulate the production of one gram of Setaria viridis leaf biomass. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8342099.v1
title: Additional file 5 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Biomass production using Sv3376 for different N sources. Flux distributions for the production of one gram leaf biomass i) with P B and both nitrate and ammonium, ii) with P B constrained and ammonium as sole N source and iii) with P B constrained and nitrate as sole N source. (XLSX 14, 565 kb)
DOI: 10.6084/m9.figshare.8342093
title: MOESM3 of The bacterial microbiome of field-collected Dermacentor marginatus and Dermacentor reticulatus from Slovakia

description: Additional file 3: Table S2. Analysis of taxonomy and abundance of the obtained OTUs.
DOI: 10.6084/m9.figshare.8342096.v1
title: Additional file 4 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Leaf biomass composition. Biomass proportions used to simulate the production of one gram of Setaria viridis leaf biomass. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8342093.v1
title: MOESM3 of The bacterial microbiome of field-collected Dermacentor marginatus and Dermacentor reticulatus from Slovakia

description: Additional file 3: Table S2. Analysis of taxonomy and abundance of the obtained OTUs.
DOI: 10.6084/m9.figshare.8342090
title: Additional file 3 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Biomass production using Sv3376 under phototrophic and heterotrophic condition. One mol of each biomass production in phototrophic and heterotrophic condition under allowed and blocked proton. (XLS 131 kb)
DOI: 10.6084/m9.figshare.8342081
title: Additional file 2 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Multi-tissue metabolic model of S. viridis comprising leaf and stem tissues. Multi-tissue version of Sv3376 to simulate C4 photosynthesis. (XLS 3944 kb)
DOI: 10.6084/m9.figshare.8342090.v1
title: Additional file 3 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Biomass production using Sv3376 under phototrophic and heterotrophic condition. One mol of each biomass production in phototrophic and heterotrophic condition under allowed and blocked proton. (XLS 131 kb)
DOI: 10.6084/m9.figshare.8342081.v1
title: Additional file 2 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Multi-tissue metabolic model of S. viridis comprising leaf and stem tissues. Multi-tissue version of Sv3376 to simulate C4 photosynthesis. (XLS 3944 kb)
DOI: 10.6084/m9.figshare.8342072
title: Additional file 1 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Genome-scale metabolic model of Setaria viridis (Sv3376). Reactions, metabolites, chemical formulae, pathways, EC numbers and gene association of reactions. (XLS 1727 kb)
DOI: 10.6084/m9.figshare.8342075
title: Additional file 2: of Health economic evaluation in orthotics and prosthetics: a systematic review protocol

description: Data extraction template (XLSX 56 kb)
DOI: 10.6084/m9.figshare.8342078
title: MOESM1 of The bacterial microbiome of field-collected Dermacentor marginatus and Dermacentor reticulatus from Slovakia

description: Additional file 1: Table S1. Analysis of the obtained MiSeq sequencing reads per sample.
DOI: 10.6084/m9.figshare.8342072.v1
title: Additional file 1 of A mass and charge balanced metabolic model of Setaria viridis revealed mechanisms of proton balancing in C4 plants

description: Genome-scale metabolic model of Setaria viridis (Sv3376). Reactions, metabolites, chemical formulae, pathways, EC numbers and gene association of reactions. (XLS 1727 kb)
DOI: 10.6084/m9.figshare.8342075.v1
title: Additional file 2: of Health economic evaluation in orthotics and prosthetics: a systematic review protocol

description: Data extraction template (XLSX 56 kb)
DOI: 10.6084/m9.figshare.8342078.v1
title: MOESM1 of The bacterial microbiome of field-collected Dermacentor marginatus and Dermacentor reticulatus from Slovakia

description: Additional file 1: Table S1. Analysis of the obtained MiSeq sequencing reads per sample.
DOI: 10.6084/m9.figshare.8341952
title: Additional file 2 of Block Forests: random forests for blocks of clinical and omics covariate data

description: Electronic Appendix. This folder contains all R Code written to perform the analyses presented in this paper and in Additional file 1 as well as Rda files enabling fast evaluation of the results. (ZIP 26,855 kb)
DOI: 10.6084/m9.figshare.8341952.v1
title: Additional file 2 of Block Forests: random forests for blocks of clinical and omics covariate data

description: Electronic Appendix. This folder contains all R Code written to perform the analyses presented in this paper and in Additional file 1 as well as Rda files enabling fast evaluation of the results. (ZIP 26,855 kb)