cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1061414.v1
title: ECHAM5-HAM precipitation and aerosol optical depth data

description: <strong>Introduction:</strong> These files contain data from ECHAM5.5-HAM2.0 model simulations. The Sundqvist stratiform cloud cover scheme has been used. The simulations are described in Grandey et al. (2013; doi:10.5194/acp-13-3177-2013) and Grandey et al. (2014; doi:10.1002/2014GL060958). These data are analysed in Grandey et al. (2014; 10.1002/2014GL060958). <strong>File size warning:</strong> These files are relatively large. <strong>File format:</strong> .nc is the extension for NetCDF format, a binary data format commonly used for climate model output data. These NetCDF files contain metadata which aid interpretation of the contents. The metadata and data can be explored using the free Panoply software tool (http://www.giss.nasa.gov/tools/panoply/ [28-Aug-2015]). <strong>File naming convention:</strong> - HAM_B011 refers to the control simulation. - HAM_B013 refers to the NoConvScav simulation, in which wet scavenging by convective precipitation has been turned off. - *_apr_*.nc contain precipitation data. - *_aod_*.nc contain aerosol optical depth data. - *_aoddry_* contain dry aerosol optical depth data. <strong>Contributions and acknowledgments:</strong> Philip Stier and Till M. Wagner contributed to the experimental design. P.S. contributed to the configuration of ECHAM5-HAM. P.S., T.M.W. and Anisha Gururaj contributed towards the analysis in Grandey et al. (2014). The simulations were performed while B.S.G. was supported by a UK Natural Environment Research Council (NERC) DPhil studentship. The analysis was performed while B.S.G. was funded by the Singapore National Research Foundation (NRF) through the Singapore-MIT Alliance for Research and Technology (SMART) Center for Environmental Sensing and Modeling (CENSAM). <strong>Paper reference for further details:</strong> Grandey, B. S., A. Gururaj, P. Stier and T. M. Wagner (2014), Rainfall-aerosol relationships explained by wet scavenging and humidity, <em>Geophysical Research Letters</em>, doi:10.1002/2014GL060958
DOI: 10.17632/tgjh6mwhwz
title: Quorum sensing regulatory protein LsrR affects Avian Pathogenic Escherichia coli pathogenicity by regulating cysN

description: Avian Pathogenic Escherichia coli (APEC) is a strain of extraintestinal pathogenic E. coli that is the primary cause of economic loss, has acquired antibiotic resistance, and poses a significant challenge to medical microbiologists in impoverished countries. In APEC, cysN is essential for cysteine synthesis, which is required for protein synthesis, along with the creation of numerous sulfur-containing compounds for bacterial growth and metabolism. However, the involvement of cysN in APEC pathogenicity has not been investigated. To investigate the function of cysN in APEC, cysN gene mutant and complemented strains were constructed and biologically characterized. The results determined that Quorum Sensor regulator LsrR directly binds to the cysN promoter to a region between -289 to -319 of the cysN promoter and inactivation of the cysN gene decreased biofilm formation (P &lt; 0.01), serum resistance (P &lt; 0.05), adhesion (P &lt; 0.01), invasion capacity (P &lt; 0.05) of APEC94 towards host cells, reduced transcription levels of fimbrial, flagellar, and virulence genes (P &lt; 0.05), altered antibiotic resistance characteristic, and reducing APEC94 colonization in blood, lungs, liver, spleen, and intestine (P &lt; 0.05) in mice, and the mortality rate of mutant APEC94∆cysN and APEC94 was 12.5% and 87.5% in a mice infection model respectively. In addition, the results revealed that cysN positively affects the expression of flagellar, type 1 fimbria, and virulence genes in APEC. However, the expression levels of virulence genes such as csgF, fyuA, yjaA, chuA, ompA, and iss were not influenced compared to the wild-type strain. Similarly, the transcription level of the inflammatory cytokines IL-2, IL-4, IL-6, IL-10, TNF-α, and INF-ƴ was significantly decreased in mutant APEC94ΔcysN strain infected tissues compared with the wild-type strain (P &lt; 0.05). These results indicate that regulator cysN contributes to the virulence and pathogenicity of APEC.
DOI: 10.3535/ljt-qh9-kll
title: Graphic granite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/abg-3wa-1np
title: igneous- and metamorphic rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g4w-ff5-e56
title: Skiagia orbiculare Volkova, 1968

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22132359.v1
title: Bone Growth and Meat Quality of Quails Submitted to Different Lighting Programs

description: ABSTRACT The present study was executed to evaluate the effect of lighting programs for meat quails on their bone growth and development. A total of 1500 sexed European quails (Coturnix coturnix coturnix) were distributed using a completely randomized design in a 2 × 3 factorial arrangement, with two sexes and three lighting programs (natural, intermittent, and continuous) with five replicates of 50 quails. The lighting programs were applied in the period from 7 to 49 d of age. Weekly slaughterings were performed to remove the tibiotarsus and femur and subsequently determine weight, length, dry and mineral matter content. The growth and deposition curves of dry and mineral matter in the bones were obtained using the Gompertz model. There was no significant interaction between lighting programs and sex for the estimates of the Gompertz curve parameters of all variables studied. There was an effect of the lighting programs only on the time needed to reach the maximum deposition rate of the growth curve and dry and mineral matter deposition. Females showed higher weight and deposition of mineral matter at maturity, and took longer to reach the maximum deposition rate value for these variables. There was influence of the lighting programs on resistance and bone deformity of the tibiotarsus. For quails raised in the tropical region, a natural or intermittent lighting program must be used, as it does not compromise the development of bones and assures bone quality.
DOI: 10.3535/e6s-2qd-f6d
title: Dictyotidium Eisenack, 1955

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nzx-3ww-bsv
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3683077_d5.v1
title: Additional file 1: of Sex and age differences in the expression of liver microRNAs during the life span of F344 rats

description: 212 differentially expressed miRNAs by age for each sex. The age contrast with differential expression is given along with fold-ratio, ANOVA FDR, degrees of freedom (df), ANOVA F statistic, and p values for both males and females. (XLSX 232Â kb)
DOI: 10.3535/2st-bjv-gf0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/akm-npn-p0t
title: †Cytherellina Jones & Holl, 1869

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/mxztky75f2
title: WQRS_NZ

description: A dataset of 153 in situ Chl$a$ measurements with Sentinel-3 OLCI matchups from 11 lakes in the central North Island of New Zealand. The lakes are of volcanic and riverine origin and encompass a range of bio-geo-optical types. Trophic states range from clear oligotrophic e.g., Lake Taupo, to hypereutrophic e.g., Lake Waikare, with extremely high turbidity resulting from sediment resuspension and algal biomass. The situ measurements were made under water quality monitoring programmes run by the regional councils of Waikato and Bay of Plenty, using standard fluorometric and spectroscopic methods, respectively, and hosted by and processed by Lakes And Land, Air, Water Aotearoa (LAWA). The top-of-atmosphere reflectance was atmospherically corrected with the C2RCC processor, resulting in 16 bands ranging from 400-1040 nm, specifically Oa01-Oa12, Oa16-Oa18 and Oa21. Satellite matchups have a 3-day tolerance window.
DOI: 10.17632/nszt9smm64
title: Field-aged Pyrogenic Carbon Migration Enhances Electrochemical Capacities in Deep Soil: A Decade of Evidence

description: This data set includes the "Field-aged Pyrogenic Carbon Migration Enhances Electrochemical Capacities in Deep Soil: Important data covered in the manuscript include pyrogenic carbon, pyrogenic carbon after aging, and the topsoil to the deep soil of the depth at 0-200 cm for both control soil and pyrogenic carbon amended soils.
DOI: 10.3535/24c-a12-yke
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a3z-f8h-n90
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/4xm52ybv3g
title: IkBz is a dual-use coactivator of NFkB and POU transcription factors

description: Uncropped Western blots
DOI: 10.3535/5z1-mcx-syp
title: Asaphiscus wheeleri Meek, 1873

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/80j-a7d-za3
title: Porphyry

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dd7-0fm-kr3
title: Tasmanites E.T. Newton, 1875

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/vw87fhskyc
title: Replication package for "Resource Misallocation in China: Biased Subsidies versus Credit Discrimination"

description: Replication package for "Resource Misallocation in China: Biased Subsidies versus Credit Discrimination" by Liying Weng, Changsheng Xu, and Ming Yi
Folder “Matlab” contains the data and Matlab code to replicate Tables 1 and 3 and all figures in the paper. See “README for MATLAB Files” in this folder for detailed descriptions.
Folder “Stata” contains the data and Stata code to replicate Table 2 and generate the relevant data in Figures 2 and 3. See “README for STATA files” in this folder for detailed descriptions.
DOI: 10.3535/zk8-zmy-9xq
title: †Loxonema Phillips, 1841

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zll-p6d-g73
title: Rapakivi granite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26207363.v1
title: <b>Development and characterization of biodegradable films for food packaging applications using chitosan and poly(allylamine hydrochloride)</b>

description: This study aimed to explore the feasibility of CS and poly(allylamine ‎hydrochloride) (PAH) blend films in terms of color, functional groups, ‎morphology, thermal stability, tensile strength (TS), and biodegradability for food packaging ‎applications. Four films namely, CPA-0 (100% CS), CPA-1 (90% CS/10% PAH), CPA-2 (80% CS/20% PAH), and CPA-3 (70% CS/30% PAH) were prepared and characterized using UV/Vis, ATR-FTIR, XRD, and DSC. The physical and optical properties, moisture barrier potential, mechanical strength, thermal characteristics, and biodegradability were investigated to assess the potential of prepared films for their utilization in food packaging applications. It was observed that the film comprising 10% PAH (CPA-1) displayed relatively better mechanical properties, thermal stability, promising moisture barrier, biodegradability (100% within 14 days), and good color tones. CPA-1 exhibited maximum values of TS (83.62 MPa) and YM (2.9 GPa). UV/Visible spectroscopy and ATR-FTIR analysis revealed that CPA-1 exhibited 80% transmittance and compatibility with PAH, respectively. DSC indicated enhanced molecular stability of the CS matrix with PAH. XRD revealed a semi-crystalline structure featuring an orderly arrangement of the polymer, which was instrumental in imparting good mechanical properties. This study suggests the potential of these blend films as a viable option for food packaging.
DOI: 10.15468/dl.h2ajra
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Diplodia corticola A.J.L.Phillips, A.Alves & J.Luque"
 ]
}

 The dataset includes 79 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009612-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/8sq-hp1-yel
title: Liepaina plana Jankauskas & Volkova, 1979

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/59r-jh6-t25
title: Selgase dolostone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ba6-1t8-lqf
title: Dartmuthia gemmifera Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hen-sf2-bxl
title: Vulcanisphaera turbata, Martin 1981

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3469157.v1
title: Transposon screen mappings

description: piggyBac vector integration sites in mouse embryonic stem cells. Mapped to mouse genome m38. Fields (tab separated:ChromosomeStrandPositionTotal reads mapping to this positionReads for this barcodeBarcodeInsertion site sequence (B01 only)Gene(s) overlapping insertion siteGene description<br>
DOI: 10.3535/jek-b8c-vkx
title: Kootenia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14691441.v1
title: A bio-inspired robotic climbing robot to understand kinematic and morphological determinants for an optimal climbing gait

description: <b>Abstract</b> Robotic advances for increasingly complex tasks especially in the field of search and rescue or exploration are limited for wheeled systems, therefore the study of legged locomotion for robotic applications has become more important. To successfully navigate in regions with rough terrain, a robot must not only be able to negotiate obstacles, but also climb steep inclines. Following the principles of biomimetics, we developed a modular bio-inspired climbing robot, using generic hardware components and rapid prototyping, aiming to mimic the lizards bauplan including an actuated spine, shoulders, and feet which interlock with the surface via claws. We included the ability to modify gait and hardware parameters and simultaneously collect data with the robot’s sensors on climbed distance, slip occurrence and efficiency. We first explored the speed-stability trade off and its interaction with limb swing phase dynamics, finding a sigmoidal pattern of limb movement resulted in the greatest distance travelled. By modifying wrist orientation, we found two optima for both speed and stability, suggesting multiple stable configurations. We varied spine and limb range of motion, again showing two possible optimum configurations, and finally varied the centre of pro- and retraction on climbing performance, showing an advantage for protracted limbs during the stride. We then stacked optimal regions of performance and show that combining optimal dynamic patterns with either foot angles or ROM configurations have the greatest performance, but further optima stacking resulted in a decrease in performance, suggesting complex interactions between kinematic parameters. The search of optimal parameter configurations might not only be beneficial to improve robotic in-field operations but may also further the study of the locomotive evolution of climbing of animals, like lizards or insects.
DOI: 10.17632/ycxxrg8497
title: Data for: "Additional data confirms the impact of the COVID19 lockdown on the behavior and fattening of migratory snow geese"

description: Please find all metadata and dataset information in the README.md file.

Article abstract: The COVID19 lockdown provided a unique opportunity to study the impact of human activities and conservation measures on wildlife. However, most lockdown studies were opportunistic and based on limited data, because this ‘natural experiment’ was unexpected and short-lasting. Replication of scientific results is the cornerstone of the scientific method and ensures that conclusions from such short-term studies are robust. Here, we test predictions arising from a previous study where we showed the impact of the lockdown-induced reduction in hunting disturbance on the body condition and behavior of greater snow geese (Anser caerulescens a.), a species whose management is crucial for the conservation of northern ecosystems. The analysis of two additional years of data confirmed our predictions. The return to a high hunting pressure in springs 2021‐–2022 (post-lockdown) reduced overall goose body condition compared to the lockdown year. Goose fattening in post-lockdown springs was very similar to pre-lockdown years, differing from 2020 when a high body condition was reached earlier in spring than in any other year. Radio-tracked birds spent more time in profitable but risky agricultural lands in 2021 compared to 2020, as was the case in the pre-lockdown year. Our study provides robust evidence confirming the impacts of spring hunting on greater snow goose physiology. It demonstrates the long-lasting efficiency of the spring conservation hunt established two decades ago to limit the size of the population with the aim of preserving Arctic ecosystems from overgrazing and associated negative impacts on other arctic-nesting birds.
DOI: 10.3535/h71-1ld-w5c
title: Selgase dolostone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z2l-y84-evm
title: Oeselaspis pustulata (Patten, 1931)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21908004.v1
title: Alignment-based protein mutational landscape prediction: doing more with less. Abakarova, Marquet, et al. 2023

description: This archive contains the data and tools associated with Alignment-based protein mutational landscape prediction: doing more with less, Abakarova et al. 2023. <strong>doi:</strong> https://doi.org/10.1101/2022.12.13.520259 All data concern the ProteiGym substitution benchmark available at: https://github.com/OATML-Markslab/ProteinGym. All predictions were computed using the alignment-based mutational outcome predictor GEMME, available at: http://www.lcqb.upmc.fr/GEMME. For questions, please contact elodie.laine@sorbonne-universite.fr. <br>
DOI: 10.3535/71w-q2k-n4c
title: Phlebolepis elegans (Pander, 1856)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q7x-09b-418
title: Granite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bsx-rcb-t8y
title: Phlebolepis elegans (Pander, 1856)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lfv-5fx-gry
title: Rhegmaphyllum whittardi (Smith, 1930)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1rt-mts-7xh
title: Klotziella ornata (Walcott, 1908)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5qy-95b-jpe
title: Ogygopsis klotzi Rominger, 1887

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/7hjv9rvbc6
title: 50Hz filtration

description: Original and filtered MT data in .ats format.
DOI: 10.17632/t74nt67y97
title: Detrital zircon U-Pb data from the Weixinan Sag, Beibuwan Basin and the Nanliu River with associated heavy mineral data of the Beibuwan Basin

description: Analytical data for heavy mineral and the zircon U-Pb dating of grains presented in this work.
DOI: 10.3535/9v9-9s8-e9a
title: Pollingeria grandis Walcott, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g87-r35-k3a
title: Rapakivi granite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gqw-cw2-azh
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sf1-a6x-t3z
title: Osceolia osceola [Hall, 1863] Walcott, 1914

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/ychxjr3cv6
title: Ethical decision-making -moral Intensity higher-order construct

description: Data set for PLS-SEM, IPMA and NCA
DOI: 10.3535/bhh-f21-b13
title: Olenoides

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.6834872.v6
title: Extremiles: A New Perspective on Asymmetric Least Squares

description: Quantiles and expectiles of a distribution are found to be useful descriptors of its tail in the same way as the median and mean are related to its central behavior. This article considers a valuable alternative class to expectiles, called extremiles, which parallels the class of quantiles and includes the family of expected minima and expected maxima. The new class is motivated via several angles, which reveals its specific merits and strengths. Extremiles suggest better capability of fitting both location and spread in data points and provide an appropriate theory that better displays the interesting features of long-tailed distributions. We discuss their estimation in the range of the data and beyond the sample maximum. A number of motivating examples are given to illustrate the utility of estimated extremiles in modeling noncentral behavior. There is in particular an interesting connection with coherent measures of risk protection. Supplementary materials for this article are available online.
DOI: 10.3535/sq0-2h0-awv
title: Cristallinium randomense (Martin, 1981) Martin, 1988

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vjt-9w3-jz3
title: Favosites? sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/3y95rm6chz
title: ISO 4037-1 narrow spectra series measured with CdTe spectrometer and corrected using the stripping method

description: These data refer to the measurements of X-ray spectra with a CdTe spectrometer. The raw data folder contains all the measured data. Inside it, there is a folder labeled 'First Series Calibration' that includes the Am-241 spectra for calibration and qualities N80, N100, N120, and N150. Additionally, there is another folder with a different Am-241 spectra for calibration and the qualities N10, N15, N20, N25, N30, N40, and N60. They were corrected using the Stripping Method and are stored in the folder labeled 'Corrected Data.