cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.ht76hdrs8
title: RAD-seq vcf files for the leaf beetle Gonioctena quinquepunctata sampled across Europe

description: The data set was created to characterize genetic variation in a montane
 leaf beetle, Gonioctena quinauepunctata, whose current range spans several
 mountains in Europe, and to compare alternative hypotheses about its
 evolutionary history in response to climate changes that occurred at the
 end of the Quaternary. 
description: Samples of <em>Gonioctena quinquepunctata </em>were
 collected in the Alps, Vosges, Massif Central and Pyrenees. A RAD-seq
 strategy was used to genotype all samples. DNA sequences were analyzed
 with Stacks v. 2.62. Two vcf data sets were generated, keeping only SNPs
 for which we could call a genotype for 50% of the samples separately for
 each mountain range. The first vcf data set
 (Gquinquepunctata_RADseq_phylogeography_R50_allsnp.vcf.gz) contained all
 retained SNPs, while the second data set
 (Gquinquepunctata_RADseq_phylogeography_R50_randomsnp.vcf.gz) contained
 only one randomly selected SNP per RAD sequence (locus). 
description: # RAD-seq vcf files for the leaf beetle Gonioctena quinquepunctata sampled
 across Europe
 [https://doi.org/10.5061/dryad.ht76hdrs8](https://doi.org/10.5061/dryad.ht76hdrs8) ## Description of the data and file structure Samples of *Gonioctena quinquepunctata *were collected in the Alps, Vosges, Massif Central and Pyrenees. A RAD-seq strategy was used to genotype all samples. DNA sequences were analyzed with Stacks v. 2.62. Two vcf data sets were generated, keeping only SNPs for which we could call a genotype for 50% of the samples separately for each mountain range. The first vcf data set (Gquinquepunctata_RADseq_phylogeography_R50_allsnp.vcf.gz) contained all retained SNPs, while the second data set (Gquinquepunctata_RADseq_phylogeography_R50_randomsnp.vcf.gz) contained only one SNP per locus, which was randomly selected for each locus.  ### Files and variables #### File: Gquinquepunctata\_RADseq\_phylogeography\_R50\_randomsnp.vcf.gz **Description:** Contains one randomly selected SNP per locus for which we had a genotype for at least 50% of the samples per mountain range  #### File: Gquinquepunctata\_RADseq\_phylogeography\_R50\_allsnp.vcf.gz **Description:** Contains all SNPs for which we had a genotype for at least 50% of the samples per mountain range  Sampling locations can be deduced from sample names: they correspond to the first 4 letters of the locations listed in Table S3 of the associated manuscript. ## Code/software The data sets are in the standard vcf format and were created with the STACKS software.  ## Access information Other publicly accessible locations of the data: * N/A Data was derived from the following sources: * N/A
DOI: 10.26186/150681
title: Unconformity-related rare earth element mineral potential maps

description: Maps showing the potential for unconformity-related rare earth element (URREE) mineral systems in Australia. The mineral potential maps are a synthesis of four component layers (source of metals, fluids and ligands; energy sources and fluid flow drivers; fluid flow pathways and architecture; and ore depositional gradients). A knowledge-driven methodology has been used to produce the final mineral potential models for the mineral system. Two models are provided, one including all input maps, and a second that only includes input maps with complete national data coverage. A data availability map is provided in conjunction with the mineral potential model that represents the availability of data coverage over Australia where at least one of the input maps contains areas of missing data. Data availability values range between 0 and 1, with higher values being located in areas where more input maps have complete data coverage. The input maps and mineral deposits and occurrences used to validate the mineral potential models are provided along with an assessment criteria table which contains information on the map creation.

Manuscript pre-print: Ford, A., Walsh, J., Doublier, M., Burnham, A., Cloutier, J., Fraser, G., Magee, C., Czarnota, K., 2026. Unconformity-related rare earth element mineral potential of Australia. Earth.ArXiv [Preprint]. https://pid.geoscience.gov.au/dataset/ga/150680
DOI: 10.5281/zenodo.18407568
title: JAMIYAT MUAMMOLARI ASOSIDA STARTAP G'OYALARNI ISHLAB CHIQISH VA ULARNI REALIZATSIYA QILISH MEXANIZMLARI

description: Ushbu ilmiy maqolada jamiyatning dolzarb muammolari negizida texnologik startap g‘oyalarini shakllantirish va hayotga tatbiq etish mexanizmlari o‘rganilgan. Tadqiqot doirasida global va mahalliy tajribalar tahlil qilinib, jamiyat ehtiyojlariga innovatsion yondashuvlar orqali yechim topish usullari ko‘rib chiqiladi. Xususan, jahon miqyosida katta muvaffaqiyatga erishgan Tesla kompaniyasining transport va ekologiya sohasidagi muammolarni texnologik yechimlar yordamida hal qilishi ilmiy tahlil qilingan. Shuningdek, O‘zbekiston misolida IMAN Invest (islomiy moliyaviy texnologiyalarga asoslangan investitsiya platformasi) va Uzum raqamli ekotizimi (raqamli infratuzilma va ijtimoiy xizmatlarni birlashtirgan yechim) kabi startaplar faoliyati tahlil etilib, ularning jamiyatga foydali ta’siri yoritilgan. Maqolada adabiyotlar sharhi, amaliy keyslar tahlili va qiyosiy yondashuv yordamida ijtimoiy muammolarni innovatsion biznes g‘oyalarga aylantirish mexanizmlari bo‘yicha xulosalar chiqariladi hamda kelgusida bunday startaplarni rivojlantirish bo‘yicha takliflar beriladi. Natijalar shuni ko‘rsatadiki, jamiyat muammolariga yechim izlash orqali vujudga kelgan startaplar nafaqat ijtimoiy masalalarni hal etadi, balki iqtisodiy jihatdan ham samarador bo‘lib, barqaror rivojlanishga xizmat qiladi.
DOI: 10.5281/zenodo.18407567
title: JAMIYAT MUAMMOLARI ASOSIDA STARTAP G'OYALARNI ISHLAB CHIQISH VA ULARNI REALIZATSIYA QILISH MEXANIZMLARI

description: Ushbu ilmiy maqolada jamiyatning dolzarb muammolari negizida texnologik startap g‘oyalarini shakllantirish va hayotga tatbiq etish mexanizmlari o‘rganilgan. Tadqiqot doirasida global va mahalliy tajribalar tahlil qilinib, jamiyat ehtiyojlariga innovatsion yondashuvlar orqali yechim topish usullari ko‘rib chiqiladi. Xususan, jahon miqyosida katta muvaffaqiyatga erishgan Tesla kompaniyasining transport va ekologiya sohasidagi muammolarni texnologik yechimlar yordamida hal qilishi ilmiy tahlil qilingan. Shuningdek, O‘zbekiston misolida IMAN Invest (islomiy moliyaviy texnologiyalarga asoslangan investitsiya platformasi) va Uzum raqamli ekotizimi (raqamli infratuzilma va ijtimoiy xizmatlarni birlashtirgan yechim) kabi startaplar faoliyati tahlil etilib, ularning jamiyatga foydali ta’siri yoritilgan. Maqolada adabiyotlar sharhi, amaliy keyslar tahlili va qiyosiy yondashuv yordamida ijtimoiy muammolarni innovatsion biznes g‘oyalarga aylantirish mexanizmlari bo‘yicha xulosalar chiqariladi hamda kelgusida bunday startaplarni rivojlantirish bo‘yicha takliflar beriladi. Natijalar shuni ko‘rsatadiki, jamiyat muammolariga yechim izlash orqali vujudga kelgan startaplar nafaqat ijtimoiy masalalarni hal etadi, balki iqtisodiy jihatdan ham samarador bo‘lib, barqaror rivojlanishga xizmat qiladi.
DOI: 10.5061/dryad.q2bvq83w4
title: Data from: Neuropeptide receptor distributions in male and female Eulemur vary between female-dominant and egalitarian species

description: Aggression and its neurochemical modulators are most often studied in
 males, leaving the mechanisms of female competitive aggression largely
 unexplored. To better understand how female aggression is regulated in the
 primate brain, we used receptor autoradiography to compare the neural
 distributions of oxytocin and vasopressin receptors in members of
 female-dominant versus codominant species within the Eulemur genus,
 wherein dominance structure is a reliable proxy of female (and male)
 aggression. We found that oxytocin receptor binding in the central
 amygdala was predicted by dominance structure, with male and female
 members of three codominant species showing more oxytocin receptor binding
 in this region than their peers in four female-dominant species. Based on
 the rodent literature, this finding is consistent with the presence of a
 male-like neural circuit regulating competitive aggression in female
 Eulemur. We suggest that derived peacefulness in Eulemur stems from
 selective suppression of ancestral female aggression over evolutionary
 time via a mechanism of increased oxytocin receptor binding in the CeA,
 rather than from augmented male aggression. This interpretation implies
 fitness costs to female aggression and/or benefits to its inhibition.
 These novel data establish Eulemur as a robust model for understanding the
 neural correlates of female competitive aggression.
description: # Neuropeptide receptor distributions in male and female Eulemur vary
 between female-dominant and egalitarian species
 [https://doi.org/10.5061/dryad.q2bvq83w4](https://doi.org/10.5061/dryad.q2bvq83w4) ## Description of the data and file structure Brains collected post-mortem and frozen at -80 °C following natural mortality at the Duke Lemur Center. Receptor autoradiography with competitive binding performed to quantify oxytocin and vasopressin receptor binding. ### Files and variables #### File: Compiled\_Data.csv **Description:**  ##### Variables * Animal: Individual name * Sex: biological sex of individual (F=female; M=male) * Species: Eulemur species of individual * Mating_system: mating system of species (mono=monogamous; nonmono= non-monogamous) * Female_dominant: dominance structure of species (FSD= female-dominant; CD= codominant) * Age_at_death: age of individual at death in years * Receptor: OXTR= oxytocin receptor; AVPR1a= vasopressin receptor 1a * Section: experimental condition of the measurement * Region: brain region of measurement (abbreviations can be found at [https://www.nature.com/articles/s41598-021-83342-6#abbreviations](https://www.nature.com/articles/s41598-021-83342-6#abbreviations)) * Replicate: number of repeated measurement from that region and condition * Density: optical binding density  ## Access information Other publicly accessible locations of the data: * [https://osf.io/r3tmu](https://osf.io/r3tmu)
DOI: 10.5061/dryad.905qfttw0
title: Data for: Investigating the aggregation and prionogenic properties of human cancer-related proteins

description: Cancer encompasses a range of severe diseases characterized by
 uncontrolled cell growth and the potential for metastasis. Understanding
 the mechanism underlying tumorigenesis has been a central focus of cancer
 research. Self-propagating protein aggregates, known as prions, are linked
 to various biological functions and diseases, particularly those related
 to mammalian neurodegeneration. However, it remains unclear whether
 prion-like mechanisms contribute to tumorigenesis and cancer. Using a
 combined approach of algorithmic predictions, alongside genetic and
 biochemical experimentation, we identified numerous cancer-associated
 proteins prone to aggregation, many of which contain prion-like domains
 (PrLDs). These predictions were experimentally validated for both
 aggregation and prion-formation. We demonstrate that several PrLDs undergo
 nucleation-limited amyloid formation, which can alter protein activity in
 a mitotically heritable fashion. These include SSXT, a subunit of the
 chromatin-remodeling BAF (hSWI/SNF) complexes; CLOCK, a core component of
 the circadian clock; and EPN4, a clathrin-interacting protein involved in
 protein trafficking between the trans-Golgi network and endosomes. The
 prions formed by these PrLDs occurred in multiple variants and depended on
 Hsp104, a molecular chaperone with disaggregase activity. Our results
 reveal an inherent tendency for prion-like aggregation in human
 cancer-associated proteins, suggesting a potential role for such
 aggregation in the epigenetic changes driving tumorigenesis.
description: # Data for: Investigating the aggregation and prionogenic properties of
 human cancer-related proteins
 [https://doi.org/10.5061/dryad.905qfttw0](https://doi.org/10.5061/dryad.905qfttw0) ## Description of the data and file structure Table S1 shows computational analysis results to rank the aggregation propensity and prionogenicity of 9620 cancer-associated human proteins in this study. In the csv data sheet, FI MaxRun, PASTA Energy, and PASTA Disorder are for folding/free energy/disorder; and PLAAC Score and PAPA Score are used to measure the prionogenicity of a PrLD. Columns D-H are for normalized scores (0-1) and column I is weighted score - average of the normalized scores with distinct weighting factors considering equal importance of folding/free energy/disorder and prionogenicity. Table S2 and S3 include information of plasmids and primers used in this study, respectively. N/A, information unavailable. ## Code/software Microsoft Office Excel or .cvs combatable programs.
DOI: 10.5281/zenodo.18407591
title: eZooMS analyses of medieval Danish and Swedish parchment charters

description: A total of 194 medieval parchment charters, issued in (medieval) Denmark and Sweden, were analysed for species identification with eZooMS. The research was carried out as part of my PhD at Lund University: "Parchment: demand and supply in medieval Scandinavia". The vast majority were calf parchment.

The dataset consists of .txt-files of all samples in triplicate, as well as a .csv-file that correlates the sample numbers with the Swedish National Archive's charter id, year of issue, location of issue, species, parchment glutamine index and bacollite scores, and a .txt-file for metadata.
DOI: 10.5281/zenodo.15561179
title: eZooMS analyses of medieval Danish and Swedish parchment charters

description: A total of 194 medieval parchment charters, issued in (medieval) Denmark and Sweden, were analysed for species identification with eZooMS. The research was carried out as part of my PhD at Lund University: "Parchment: demand and supply in medieval Scandinavia". The vast majority were calf parchment.

The dataset consists of .txt-files of all samples in triplicate, as well as a .csv-file that correlates the sample numbers with the Swedish National Archive's charter id, year of issue, location of issue, species, parchment glutamine index and bacollite scores, and a .txt-file for metadata.
DOI: 10.15468/dl.pkz23t
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Protomyzostomum lingua",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004225-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fk539
title: Occurrence Download

description: A dataset containing 763 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-100.99037 20.50472,-100.95044 20.50472,-100.95044 20.52136,-100.99037 20.52136,-100.99037 20.50472))",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 763 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004226-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c57s7j612
title: MassIVE MSV000100629 - Characterization and Amelioration of Filtration Difficulties Encountered in Metabolomic Studies of Clostridium thermocellum at Elevated Sugar Concentrations
title: Clostridium thermocellum, a promising candidate for consolidated bioprocessing, has been subjected to numerous engineering strategies for enhanced bioethanol production. Measurements of intracellular metabolites at substrate concentrations high enough (.50 g/L) to allow the production of industrially relevant titers of ethanol would inform efforts toward this end but have been difficult due to the production of a viscous substance that interferes with the filtration and quenching steps during metabolite extraction. To determine whether this problem is unique to C. thermocellum, we performed filtration experiments with other organisms that have been engineered for high-titer ethanol production, including Escherichia coli and Thermoanaerobacterium saccharolyticum. We addressed the problem through a series of improvements, including active pH control (to reduce problems with viscosity), investigation of different filter materials and pore sizes (to increase the filtration capacity), and correction for extracellular metabolite concentrations, and we developed a technique for more accurate intracellular metabolite measurements at elevated substrate concentrations.
DOI: 10.5061/dryad.tdz08kq89
title: Data from: Niche packing, but not niche expansion, explains the co-occurrence of hummingbirds-visited plants

description: Tropical mountains often harbour high species richness. Yet the mechanisms
 behind such high richness remain poorly understood. One prominent
 hypothesis for high species richness is niche partitioning, which reduces
 competition and promotes coexistence. Here, we evaluate niche structure
 and specialisation of plant species based on the floral traits related to
 pollination interactions across an elevational gradient in the northern
 Andes. Niche structure can vary among sites, either expanding or
 contracting, or becoming more or less packed. We sampled eleven
 communities of hummingbird-visited plants along an elevation gradient in
 the Ecuadorian Andes and measured a series of functional traits associated
 with hummingbird pollination. We used the traits of all co-occurring
 species to calculate community weighted means, functional richness, and
 mean nearest neighbour distances and evaluated how they varied across
 elevation. Additionally, we measured specialisation based on
 plant-hummingbird interaction records to assess if packing is associated
 with narrower resource use or greater niche overlap. Species and
 functional richness were constant along the elevation gradient; however,
 niche packing was stronger at mid-elevation. We found changes in network
 specialisation, where the least specialised communities were those with
 higher niche packing. These results suggest that traits related to
 pollination and plant reproduction help to explain species co-occurrence
 and specialisation.
description: # Niche packing, but not niche expansion, explains the co-occurrence of
 hummingbirds-visited plants
 [https://doi.org/10.5061/dryad.tdz08kq89](https://doi.org/10.5061/dryad.tdz08kq89) ## Description of the data and file structure ### Files and variables #### File: niche\_packing\_occ.csv **Description:** floral abundance per site ##### Variables #### File: niche\_packing\_sites.csv **Description:** geospatial information of each locality ##### Variables * site * longitude * latitude * elevation (m or ft) #### File: niche\_packing\_traits.csv **Description:** trait means for each plant species ##### Variables * FlowerSymmetry: binary variable (0 - non actinomorphic; 1 - actinomorphic) * FlowerType: binary variable (0 - non pendular flowers; 1 - pendular flowers) * AntherDehiscence: binary variable (0 - non poricidal, 1 -with poricidal anthers) * Tubelength: continuous (length of floral tube measured in cm) * StamenLength: continuous (length of stamen measured in cm) * StyleLength: continuous (length of style measured in cm) * CurvatureCentral: continuous (ratio of 1: radius in cm of te circle fits in the flower) * Opening_corolla: continuous (smaller corolla diameter in cm) ## Access information Data was derived from the following sources: * [https://zenodo.org/records/14185547](https://zenodo.org/records/14185547)
DOI: 10.5061/dryad.nzs7h451h
title: Natural variation in a cortex/epidermis-specific transcription factor bZIP89 determines lateral root development and drought resilience in maize

description: Lateral roots (LRs) branching is crucial for water and nutrient
 acquisition in plants, thus determining the overall plant performance and
 productivity. However, the transcriptional regulation of LR development in
 crops and its role in enhancing stress resilience remain largely
 unexplored. Leveraging integrated transcriptome-wide association studies
 (TWAS) and single-cell RNA sequencing (scRNA-seq), we reported a basic
 leucine zipper (bZIP) transcription factor ZmbZIP89 as an important
 regulator of LRs elongation and mapped its spatial expression pattern in
 cortex/epidermis cell types. ZmbZIP89 activates the expression of ZmPRX47
 to regulate the production of root reactive oxygen species (ROS)
 homeostasis, contributing to increased lateral root length (LRL) and
 enhanced drought resistance. Natural variations in the 3′UTR of ZmbZIP89
 enhance its expression by increasing mRNA stability, leading to improved
 LRL and drought tolerance. These findings contribute to our understanding
 of the molecular mechanisms involved in lateral root development and
 provide potential targets for breeding stress-resilient crops.
description: # Natural variation in a cortex/epidermis-specific transcription factor
 bZIP89 determines lateral root development and drought resilience in maize
 [https://doi.org/10.5061/dryad.nzs7h451h](https://doi.org/10.5061/dryad.nzs7h451h) ## Description of the data and file structure 1-RNAseq.sh: RNAseq for 357 lines 2-TWAS.R: TWAS for LRL 3.1-scRNAseq.R: scRNAseq for primary root 3.2-Deconvolution.R: Deconvolution 3.3-AuCell.R: AuCell for LRL genes 4-DAPseq.sh: DAPseq for bZIP89 5-WGS.sh: Call variants for 164 inbred lines 6-xgboost8TF100iteration.py: Machine learning models for trait prediction
DOI: 10.15468/dl.v84cu7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthocephaloides distinctus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004227-260126135527185/datasets/export for details.
DOI: 10.5281/zenodo.18399588
title: Supplementary Material for CAV'26
DOI: 10.5281/zenodo.18407600
title: CLINICAL EFFICACY OF BIS MONITORING IN THE PERIOPERATIVE PERIOD OF CONGENITAL HEART DEFECT CORRECTION IN CHILDREN

description: Background: Bispectral index (BIS) monitoring represents a promising approach for optimizing anesthetic depth in pediatric cardiac surgery. This study evaluated the clinical efficacy of BIS monitoring during perioperative management of children undergoing congenital heart defect (CHD) correction.
DOI: 10.5281/zenodo.18407599
title: CLINICAL EFFICACY OF BIS MONITORING IN THE PERIOPERATIVE PERIOD OF CONGENITAL HEART DEFECT CORRECTION IN CHILDREN

description: Background: Bispectral index (BIS) monitoring represents a promising approach for optimizing anesthetic depth in pediatric cardiac surgery. This study evaluated the clinical efficacy of BIS monitoring during perioperative management of children undergoing congenital heart defect (CHD) correction.