cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19130031.v1
title: An outline of Paleoproterozoic-Mesoproterozoic crustal evolution of the NW Amazon craton and implications for the Columbia Supercontinent

description: The Rio Negro Province in the NW Amazon craton is composed of three domains (northeastern, central, and southwestern) in turn separated into several regional terrains, showing main NE-SW and WNW-ESE structures and being composed of high-grade polydeformed basement with 1840–1700 Ma protolith ages. The Northeastern Domain shows basements dominated by high-K calc-alkaline to shoshonitic metagranitoids, orthogneisses, migmatites, augen gneisses, and local A-type leucogneisses (1810–1760 Ma, Cauaburi Complex). In Venezuela, this basement is not widely known, but encompasses the oldest rocks of the province (1840–1820 Ma, San Carlos Metamorphic Terrane). The Southwestern Domain comprises medium- to high-K calc-alkaline orthogneisses (Querari Complex) with an extended compositional range (diorite to granite), NE-trending main foliation, and 1740–1700 Ma protolith ages. The Central Domain comprises peraluminous crustal-derived granites (1520–1480 Ma), supracrustal rocks, paragneisses, and some Cauaburi Complex inliers. The Nd isotope data for the basement rocks indicates mantle sources with decreasing crustal contributions and younger T<sub>DM</sub> ages from east (2.54–1.96 Ga) to west (1.97–1.82 Ga). The Rio Negro Province is interpreted as an accretionary orogen formed by a long-lived magmatic arc system active during three phases: 1.84–1.82 Ga, 1.81–1.76 Ga (main flare up) and 1.75–1.70 Ga. Later, this arc system was affected by collisional orogenies at ~1500 Ma (Içana Orogeny) and ~1300 Ma (Putumayo Orogeny), as showed by the Ar–Ar step heating plateau ages (biotite, hornblende) and U-Pb SHRIMP ages (zircon, titanite) recording two main metamorphic events at 1520–1480 Ma (medium–high T) and 1400–1310 Ma (low–medium T), with important tectonothermal effects also further east in the Tapajós-Parima Province. Based on similar accretionary histories, the Rio Negro Province has also apparent long-lived connections with Laurentia and Baltica (Transscandinavian Belt), forming the core of the Columbia Supercontinent.
DOI: 10.6084/m9.figshare.17285255
title: Oxygen fugacity evolution of the mantle lithosphere beneath the North China Craton

description: Oxygen fugacity controls the behaviour of multivalent elements and compositions of C-O-H fluids in Earth’s mantle, which further affects the cycling of materials between the deep interior and surface of Earth. The redox state of the mantle lithosphere of typical stable cratons has been well documented, but how oxygen fugacity had varied during craton destruction remains unclear. This study estimates the oxygen fugacity of peridotite xenoliths entrained in Mesozoic and Cenozoic basalts on North China Craton (NCC), a typical destroyed craton. The oxygen fugacity vs. Mg# of olivine reveals that the mantle lithosphere beneath the NCC experienced three stages of evolution in terms of oxygen fugacity. First, the refractory and oxidized peridotite xenoliths indicate that the lithospheric mantle experienced a high degree of melt extraction and later long-term and complicated metasomatism before craton destruction. Then, the variations of olivine Mg-number in peridotites and oxygen fugacity reveal significant metasomatism by melts originated from the shallow asthenosphere during the destruction of the NCC since the Mesozoic. The third stage may have occurred when mantle peridotites interacted with silica-undersaturated melts or fluids stemmed from the mantle transition zone where the stagnant Pacific slab underlies. This study further verifies that the asthenospheric convection induced by the roll-back of the subducted paleo-Pacific slab played a crucial role in the destruction of the NCC and helps understand the oxygen fugacity variability during the later life of the craton.
DOI: 10.6084/m9.figshare.19056111.v1
title: Geochronology and geochemistry of Early Cretaceous volcanic sequences in Northwestern Peru: implications for Farallon Plate subduction

description: The Early Cretaceous geology of Northwestern (NW) Peru was characterized by emplacement of voluminous felsic volcanic rocks (e.g. the Oyotún Fm.), which have important implications for the understanding of Early Cretaceous crust-mantle interactions in the Central Andes. We present U-Pb-Hf isotopic compositions and whole-rock and trace elemental compositions of a series of Early Cretaceous volcanic rocks from the Western Cordillera and the Eastern Cordillera of the Central Andes. The volcanic rocks outcrop sporadically with limited thickness and uniform volcanic lithofacies in the western region, while the eastern region has distributions of larger scale volcanic rocks with more complex volcanic lithofacies. LA-ICP-MS zircon U-Pb dating defines the age of the Oyotún Fm. range from 138.8 Ma to 131.0 Ma in the Western Cordillera, and from 139.7 Ma to 132.3 Ma in the Eastern Cordillera. In situ Hf isotope analysis on dated zircon yield an <i>ε</i><sub>Hf</sub>(<i>t</i>) range of +3.37 to +8.42 and a T<i><sub>DM2</sub></i>(Hf) range from 983 Ma to 650 Ma with a peak at ca. 840 Ma. The Early Cretaceous felsic magmas are predominantly dacites and rhyolites with minor components of basalt and andesite, and show relatively homogeneous Hf isotopic compositions of zircon in single samples. Both the <i>ε</i><sub>Hf</sub>(<i>t</i>) of zircons and the magma temperature increase from the bottom to the top of the Early Cretaceous volcanic rocks in each studied area. All these facts imply an increasing contribution of contemporaneous underplated hot and dry mantle-derived magmas with time, both as a heat source inducing crustal melting and a source of material (melt) that variably mixed with the ancient continental crustal materials.
DOI: 10.6084/m9.figshare.21655784
title: MDD2 (MDD2018) GWAS sumstats w/o UKBB

description: GWAS summary statistics for major depressive disorder from the PGC MDD2 (Wray et al.) excluding 23andMe and UK Biobank. Cite Wray et al 2018 (source of cohort summary stastics) and Howard et al 2019 (source of UKB/PGC overlap resolution). <br> <em>Update 2022/03/07</em> - v3 Apply QC step to remove duplicate CPIDs, to match v1 - v2 Correct doubly counted Nca/Nco tallies for a subset of SNPs.
DOI: 10.34740/kaggle/dsv/5121997
title: 2021 World Population (updated daily)
DOI: 10.5519/qd.1f2ugemt
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (304 records)
DOI: 10.17870/bathspa.13341710
title: Making Books - Exhibition, The Dollhouse Space (2019) - Boekhandel Blokker, Heemstede, Netherlands

description: <i>Making Books: Character Design and Narrative in Illustration </i>is a collection of critical and creative work investigating frameworks for practice-based research and their applications to children’s picturebook illustration, focusing in particular on the processes involved as they apply to the creation of character and narrative, using a design-based approach to constructing books. <br><br>This item contains documentation of the exhibition, which took place from March to June, 2019.<br><b>The Dollhouse </b>The Dollhouse (built in 1974 by the Dutch toy-firm G. Okkerse) is a tiny, non-profit, experimental contemporary art space. It was exhibited at Boekhandel Blokker, a bookshop in The Netherlands, allowing the wider public to interact with the Dollhouse and the exhibits it contained. A selection of books were positioned around the Dollhouse to offer a sense of narrative and context. For example, <i>The Velveteen Rabbit</i>, which features a sentient toy rabbit sat alongside Toby’s room. The work is featured on the Dollhouse website and has a considerable number of followers on Instagram.<br><br><b>All photos: Ciara Finnegan</b><b>Used with permission.</b><br><b>The work is under copyright and may not be used without permission. Use of this repository acknowledges cooperation with its policies and relevant copyright law. </b><br>
DOI: 10.17870/bathspa.13341710.v1
title: Making Books - Exhibition, The Dollhouse Space (2019) - Boekhandel Blokker, Heemstede, Netherlands

description: <i>Making Books: Character Design and Narrative in Illustration </i>is a collection of critical and creative work investigating frameworks for practice-based research and their applications to children’s picturebook illustration, focusing in particular on the processes involved as they apply to the creation of character and narrative, using a design-based approach to constructing books. <br><br>This item contains documentation of the exhibition, which took place from March to June, 2019.<br><b>The Dollhouse </b>The Dollhouse (built in 1974 by the Dutch toy-firm G. Okkerse) is a tiny, non-profit, experimental contemporary art space. It was exhibited at Boekhandel Blokker, a bookshop in The Netherlands, allowing the wider public to interact with the Dollhouse and the exhibits it contained. A selection of books were positioned around the Dollhouse to offer a sense of narrative and context. For example, <i>The Velveteen Rabbit</i>, which features a sentient toy rabbit sat alongside Toby’s room. The work is featured on the Dollhouse website and has a considerable number of followers on Instagram.<br><br><b>All photos: Ciara Finnegan</b><b>Used with permission.</b><br><b>The work is under copyright and may not be used without permission. Use of this repository acknowledges cooperation with its policies and relevant copyright law. </b><br>
DOI: 10.17870/bathspa.13341746
title: Making Books - Book Chapter (2016) and Article (2017)

description: <i>Making Books: Character Design and Narrative in Illustration </i>is a collection of critical and creative work investigating frameworks for practice-based research and their applications to children’s picturebook illustration, focusing in particular on the processes involved as they apply to the creation of character and narrative, using a design-based approach to constructing books. <br><br>This item contains the recently published book chapter 'Shaping pictures: picturebook narrative from an illustrator’s perspective', <i>Narration Transdisziplinäre Wege zur Kunstdidaktik,</i> Kopaed, Munich, 2016; and recently publisher article, 'Creation as a method of enquiry: Reflections on practice-based research in children’s picturebook illustration' published in the Journal of Illustration, November, 2017 and<br>Workshops exploring this theme were presented at the 22nd Annual IBBY UK conference in 2015 and at a workshop on Pictures and Narrative in Liestal, Switzerland, 2014. As part of our outreach programme, over 2,000 children have made books at children’s book-making workshops since 2015, in collaboration with arts festivals and organisations in the South West and Ireland. Children’s explorations of making their own books were presented at the iJade conference: Art and Design as Agents for Change, Dublin, 2017. <br>___________<br>Source 1: <br><b>Little, L (2016) 'Shaping pictures: picturebook narrative from an illustrator's perspective.' In: Lieber, G and Uhlig, B, eds. <i>Narration Transdisziplinäre Wege zur Kunstdidaktik</i>. Kopaed, Munich, pp. 235-248. ISBN 9783867361453</b><br><br>Source 2: <br><b>Little, L (2017) 'Creation as a method of enquiry: reflections on practice-based research in children’s picturebook illustration.' <i>Journal of Illustration</i>, 4 (2). pp. 173-185. ISSN 2052-0204</b><br><br>
DOI: 10.17870/bathspa.13341746.v1
title: Making Books - Book Chapter (2016) and Article (2017)

description: <i>Making Books: Character Design and Narrative in Illustration </i>is a collection of critical and creative work investigating frameworks for practice-based research and their applications to children’s picturebook illustration, focusing in particular on the processes involved as they apply to the creation of character and narrative, using a design-based approach to constructing books. <br><br>This item contains the recently published book chapter 'Shaping pictures: picturebook narrative from an illustrator’s perspective', <i>Narration Transdisziplinäre Wege zur Kunstdidaktik,</i> Kopaed, Munich, 2016; and recently publisher article, 'Creation as a method of enquiry: Reflections on practice-based research in children’s picturebook illustration' published in the Journal of Illustration, November, 2017 and<br>Workshops exploring this theme were presented at the 22nd Annual IBBY UK conference in 2015 and at a workshop on Pictures and Narrative in Liestal, Switzerland, 2014. As part of our outreach programme, over 2,000 children have made books at children’s book-making workshops since 2015, in collaboration with arts festivals and organisations in the South West and Ireland. Children’s explorations of making their own books were presented at the iJade conference: Art and Design as Agents for Change, Dublin, 2017. <br>___________<br>Source 1: <br><b>Little, L (2016) 'Shaping pictures: picturebook narrative from an illustrator's perspective.' In: Lieber, G and Uhlig, B, eds. <i>Narration Transdisziplinäre Wege zur Kunstdidaktik</i>. Kopaed, Munich, pp. 235-248. ISBN 9783867361453</b><br><br>Source 2: <br><b>Little, L (2017) 'Creation as a method of enquiry: reflections on practice-based research in children’s picturebook illustration.' <i>Journal of Illustration</i>, 4 (2). pp. 173-185. ISSN 2052-0204</b><br><br>
DOI: 10.17870/bathspa.14074217
title: Making Books - Creation of the Artist's Book: Methods and Processes

description: <i>Making Books: Character Design and Narrative in Illustration </i>is a collection of critical and creative work investigating frameworks for practice-based research and their applications to children’s picturebook illustration, focusing in particular on the processes involved as they apply to the creation of character and narrative, using a design-based approach to constructing books. <br><br>This item contains documentation of the creation of the artist's book, along with the methods and processes involved. There are brief notes reflecting on The Artist's Book as a created artefact, reflections on scale, and text exploration of the methods and processes of making.<br><b>All photos: Laura Little</b><b>Used with permission. </b><br><b>The work is under copyright and may not be used without permission. Use of this repository acknowledges cooperation with its policies and relevant copyright law. </b><br>
DOI: 10.17870/bathspa.14074217.v1
title: Making Books - Creation of the Artist's Book: Methods and Processes

description: <i>Making Books: Character Design and Narrative in Illustration </i>is a collection of critical and creative work investigating frameworks for practice-based research and their applications to children’s picturebook illustration, focusing in particular on the processes involved as they apply to the creation of character and narrative, using a design-based approach to constructing books. <br><br>This item contains documentation of the creation of the artist's book, along with the methods and processes involved. There are brief notes reflecting on The Artist's Book as a created artefact, reflections on scale, and text exploration of the methods and processes of making.<br><b>All photos: Laura Little</b><b>Used with permission. </b><br><b>The work is under copyright and may not be used without permission. Use of this repository acknowledges cooperation with its policies and relevant copyright law. </b><br>
DOI: 10.5281/zenodo.7704741
title: fingeRNAt—A novel tool for high-throughput analysis of nucleic acid-ligand interactions - supplementary data.

description: <b>fingeRNAt—A novel tool for high-throughput analysis of nucleic acid-ligand interactions - supplementary data.</b>Computational methods play a pivotal role in drug discovery and are widely applied in virtual screening, structure optimization, and compound activity profiling. Over the last decades, almost all the attention in medicinal chemistry has been directed to protein-ligand binding, and computational tools have been created with this target in mind. With novel discoveries of functional RNAs and their possible applications, RNAs have gained considerable attention as potential drug targets. However, the availability of bioinformatics tools for nucleic acids is limited. Here, we introduce fingeRNAt—a software tool for detecting non-covalent interactions formed in complexes of nucleic acids with ligands. The program detects nine types of interactions: (i) hydrogen and (ii) halogen bonds, (iii) cation-anion, (iv) pi-cation, (v) pi-anion, (vi) pi-stacking, (vii) inorganic ion-mediated, (viii) water-mediated, and (ix) lipophilic interactions. However, the scope of detected interactions can be easily expanded using a simple plugin system. In addition, detected interactions can be visualized using the associated PyMOL plugin, which facilitates the analysis of medium-throughput molecular complexes. Interactions are also encoded and stored as a bioinformatics-friendly Structural Interaction Fingerprint (SIFt)—a binary string where the respective bit in the fingerprint is set to 1 if a particular interaction is present and to 0 otherwise. This output format, in turn, enables high-throughput analysis of interaction data using data analysis techniques. We present applications of fingeRNAt-generated interaction fingerprints for visual and computational analysis of RNA-ligand complexes, including analysis of interactions formed in experimentally determined RNA-small molecule ligand complexes deposited in the Protein Data Bank. We propose interaction fingerprint-based similarity as an alternative measure to RMSD to recapitulate complexes with similar interactions but different folding. We present an application of interaction fingerprints for the clustering of molecular complexes. This approach can be used to group ligands that form similar binding networks and thus have similar biological properties. The fingeRNAt software is freely available at https://github.com/n-szulc/fingeRNAt.
description: This research was funded in part by the National Science Centre in Poland (grant number 2020/39/B/NZ2/03127 to F.S.)
DOI: 10.5281/zenodo.7704742
title: fingeRNAt—A novel tool for high-throughput analysis of nucleic acid-ligand interactions - supplementary data.

description: <b>fingeRNAt—A novel tool for high-throughput analysis of nucleic acid-ligand interactions - supplementary data.</b>Computational methods play a pivotal role in drug discovery and are widely applied in virtual screening, structure optimization, and compound activity profiling. Over the last decades, almost all the attention in medicinal chemistry has been directed to protein-ligand binding, and computational tools have been created with this target in mind. With novel discoveries of functional RNAs and their possible applications, RNAs have gained considerable attention as potential drug targets. However, the availability of bioinformatics tools for nucleic acids is limited. Here, we introduce fingeRNAt—a software tool for detecting non-covalent interactions formed in complexes of nucleic acids with ligands. The program detects nine types of interactions: (i) hydrogen and (ii) halogen bonds, (iii) cation-anion, (iv) pi-cation, (v) pi-anion, (vi) pi-stacking, (vii) inorganic ion-mediated, (viii) water-mediated, and (ix) lipophilic interactions. However, the scope of detected interactions can be easily expanded using a simple plugin system. In addition, detected interactions can be visualized using the associated PyMOL plugin, which facilitates the analysis of medium-throughput molecular complexes. Interactions are also encoded and stored as a bioinformatics-friendly Structural Interaction Fingerprint (SIFt)—a binary string where the respective bit in the fingerprint is set to 1 if a particular interaction is present and to 0 otherwise. This output format, in turn, enables high-throughput analysis of interaction data using data analysis techniques. We present applications of fingeRNAt-generated interaction fingerprints for visual and computational analysis of RNA-ligand complexes, including analysis of interactions formed in experimentally determined RNA-small molecule ligand complexes deposited in the Protein Data Bank. We propose interaction fingerprint-based similarity as an alternative measure to RMSD to recapitulate complexes with similar interactions but different folding. We present an application of interaction fingerprints for the clustering of molecular complexes. This approach can be used to group ligands that form similar binding networks and thus have similar biological properties. The fingeRNAt software is freely available at https://github.com/n-szulc/fingeRNAt.
description: This research was funded in part by the National Science Centre in Poland (grant number 2020/39/B/NZ2/03127 to F.S.)
DOI: 10.5281/zenodo.7704752
title: fingeRNAt—A novel tool for high-throughput analysis of nucleic acid-ligand interactions - supplementary data.

description: <b>fingeRNAt—A novel tool for high-throughput analysis of nucleic acid-ligand interactions - supplementary data.</b>Computational methods play a pivotal role in drug discovery and are widely applied in virtual screening, structure optimization, and compound activity profiling. Over the last decades, almost all the attention in medicinal chemistry has been directed to protein-ligand binding, and computational tools have been created with this target in mind. With novel discoveries of functional RNAs and their possible applications, RNAs have gained considerable attention as potential drug targets. However, the availability of bioinformatics tools for nucleic acids is limited. Here, we introduce fingeRNAt—a software tool for detecting non-covalent interactions formed in complexes of nucleic acids with ligands. The program detects nine types of interactions: (i) hydrogen and (ii) halogen bonds, (iii) cation-anion, (iv) pi-cation, (v) pi-anion, (vi) pi-stacking, (vii) inorganic ion-mediated, (viii) water-mediated, and (ix) lipophilic interactions. However, the scope of detected interactions can be easily expanded using a simple plugin system. In addition, detected interactions can be visualized using the associated PyMOL plugin, which facilitates the analysis of medium-throughput molecular complexes. Interactions are also encoded and stored as a bioinformatics-friendly Structural Interaction Fingerprint (SIFt)—a binary string where the respective bit in the fingerprint is set to 1 if a particular interaction is present and to 0 otherwise. This output format, in turn, enables high-throughput analysis of interaction data using data analysis techniques. We present applications of fingeRNAt-generated interaction fingerprints for visual and computational analysis of RNA-ligand complexes, including analysis of interactions formed in experimentally determined RNA-small molecule ligand complexes deposited in the Protein Data Bank. We propose interaction fingerprint-based similarity as an alternative measure to RMSD to recapitulate complexes with similar interactions but different folding. We present an application of interaction fingerprints for the clustering of molecular complexes. This approach can be used to group ligands that form similar binding networks and thus have similar biological properties. The fingeRNAt software is freely available at https://github.com/n-szulc/fingeRNAt.
description: This research was funded in part by the National Science Centre in Poland (grant number 2020/39/B/NZ2/03127 to F.S.)
DOI: 10.17870/bathspa.14074265
title: Making Books - Research Timeline

description: <i>Making Books: Character Design and Narrative in Illustration </i>is a collection of critical and creative work investigating frameworks for practice-based research and their applications to children’s picturebook illustration, focusing in particular on the processes involved as they apply to the creation of character and narrative, using a design-based approach to constructing books. <br><br>This item contains the Research Timeline.