cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ktxm5gphj3
title: Data for: Application of Invers Distance Weighted and Ordinary Kriging interpolations in the groundwater table mapping

description: Inverse distance weighting and ordinary kriging methods
DOI: 10.6084/m9.figshare.14579427.v1
title: Supplementary Material for: Exploring Markers of Exhausted CD8 T Cells to Predict Response to Immune Checkpoint Inhibitor Therapy for Hepatocellular Carcinoma

description: <b><i>Background:</i></b> Reversal of CD8 T-cell exhaustion was considered a major antitumor mechanism of anti-programmed cell death-1 (PD-1)/ anti-programmed death ligand-1 (PD-L1)-based immune checkpoint inhibitor (ICI) therapy. <b><i>Objectives:</i></b> The aim of this study was to identify markers of T-cell exhaustion that is best associated with ICI treatment efficacy for advanced hepatocellular carcinoma (HCC). <b><i>Methods:</i></b> Immune cell composition of archival tumor samples was analyzed by transcriptomic analysis and multiplex immunofluorescence staining. <b><i>Results:</i></b> HCC patients with objective response after anti-PD-1/anti-PD-L1-based ICI therapy (<i>n</i> = 42) had higher expression of genes related to T-cell exhaustion. A 9-gene signature (LAG3, CD244, CCL5, CXCL9, CXCL13, MSR1, CSF3R, CYBB, and KLRK1) was defined, whose expression was higher in patients with response to ICI therapy, correlated with density of CD8<sup>+</sup>LAG3<sup>+</sup> cells in tumor microenvironment, and independently predicted better progression-free and overall survival. This 9-gene signature had similar predictive values for patients who received single-agent or combination ICI therapy and was not associated with prognosis in HCC patients who received surgery, suggesting that it may outperform other T-cell signatures for predicting efficacy of ICI therapy for HCC. For HCC patients who underwent surgery for both the primary liver and metastatic lung tumors (<i>n</i> = 31), lung metastatic HCC was associated with a higher exhausted CD8 T-cell signature, consistent with prior observation that patients with lung metastatic HCC may have higher probability of response to ICI therapy. <b><i>Conclusions:</i></b> CD8 T-cell exhaustion in tumor microenvironment may predict better efficacy of ICI therapy for HCC.
DOI: 10.6084/m9.figshare.5048950.v2
title: China provincial CO2 emission inventory (reference approach), 1997-2015

description: The dataset provides China provincial CO2 emission inventory (reference approach) from 1997-2015.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.48420/23283998.v2
title: TriTan: An efficient triple non-negative matrix factorisation method for integrative analysis of single-cell multiomics datarevision.zip contains tutorial and benchmark datasets

description: Three multiple publicly available single-cell multi-modal (two modalities - RNA and ATAC) datasets of varying sizes to comprehensively benchmark TriTan against other methods and leverage the output from TriTan for extensive downstream analyses. 
 PBMC-10K: Human peripheral blood mononuclear cells of 10X Multiome from(https://www.10xgenomics.com/resources/datasets/pbmc-from-a-healthy-donor-granulocytes-removed-through-cell-sorting-10-k-1-standard-1-0-0) .  pbmc10k.h5mu : .h5mu data with two modalities; PBMC-10K-celltype.txt: ground truth cell type labels.
 Bone marrow mononuclear cells (NeurIPS 2021 ) of 10X Multiome from GSE194122. GSE194122.zip contains prepocessed .h5mu data as well as ground truth.
 Mouse skin cells using SHARE-seq protocol from GSM4156597. The .zip data contains prepocessed and unprepossed scRNA-seq and scATAC-seq data.;  GSM4156597_skin_celltype.txt:ground truth cell type labels.

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DOI: 10.6084/m9.figshare.14913858.v1
title: A chromosome-level genome of cotton bollworm

description: We <i>de novo</i> assembled a high-quality, chromosome-level reference genome (contig N50 equals to 7.34 Mb) of <i>H. a. armigera</i>, using PacBio long-reads. Creating and utilizing a genetic map, 99.13% sequences were assigned into 31 chromosomes (Z-chromosome + 30 autosomes).
DOI: 10.6084/m9.figshare.17263358.v1
title: Supplementary Material for: Endurance exercise training-attenuated diabetic kidney disease with muscle weakness in spontaneously diabetic Torii fatty rats.

description: Abstract Background The aim of this study was to evaluate protective effects of endurance exercise training against diabetic kidney disease (DKD) with muscle weakness by using male spontaneously diabetic Torii (SDT) fatty rats as type 2 diabetic animal models with obesity, hypertension, and hyperlipidemia. Methods Eight-week-old SDT fatty rats (n = 12) and Sprague–Dawley (SD) rats (n = 10) were randomly divided into exercise (Ex; SDT-Ex: n = 6, SD-Ex: n = 5) and sedentary groups (SDT-Cont: n = 6, SD-Cont: n = 5), respectively. Each group underwent regular treadmill exercise four times a week from ages 8 to 16 weeks. Results The exercise attenuated hypertension and hyperlipidemia and prevented increases in renal parameter levels without affecting blood glucose levels. In the SDT fatty rats, it prevented induction of renal morphological abnormalities in the interstitium of the superficial and intermediate layers of the cortex. Downregulated expression of endothelial nitric oxide synthase in the glomerulus of the SDT fatty rats was significantly upregulated by the exercise. The exercise upregulated the renal expressions of both medium-chain acyl-CoA dehydrogenase and peroxisome proliferator-activated receptor γ coactivator-1α related to fatty acid metabolism. It increased muscle strength and both muscle weight and cross-sectional area of type IIb muscle fibers in the extensor digitorum longus muscle in the SDT fatty rats. Conclusion Endurance exercise training in type 2 diabetes ameliorates DKD by improving endothelial abnormality and enhancing fatty acid metabolism in addition to attenuated hypertension, hyperlipidemia, and muscle weakness independently of blood glucose levels.
DOI: 10.6084/m9.figshare.25466866.v1
title: <b>Integrating hydrological knowledge into deep learning for DEM super-resolution</b>

description: Deep learning-based super-resolution methods have been successfully applied to DEM downscaling studies by designing structures and loss functions of the model. However, the design of super-resolution models with enhanced performance remains a challenge, particularly in the context of hydrological studies, which require high-resolution DEMs with correct hydrological characteristics. In this study, we introduce a super-resolution model that integrates hydrologic knowledge (HKSRCGAN), aiming for the model to effectively maintain topographic features as well as the hydrologic availability of the DEMs. FABDEM with 30 m spatial resolution，which removes buildings and vegetation, was used in the experiment to demonstrate the usability of the proposed method. The hydrological knowledge derived from surface flow direction and hydrological features are integrated into a deep learning algorithm to guide model training. The results show that the HKSRCGAN outperforms the bicubic interpolation, SRCNN, SRGAN, SRResNet methods in reducing topographic errors and maintaining hydrologic characteristics. In the test area, the entropy difference analysis shows that the DEM generated by HKSRCGAN is more similar to the information contained in the reference DEM. Furthermore, super-resolution models integrating hydrological knowledge are valuable for modeling terrain shaped mainly by gravity and surface water flows. In addition, deep learning-based models integrating hydrologic knowledge are expected to be applied in DEM upscaling to maintain consistent hydrological characteristics.
DOI: 10.17632/hrgxtyds44
title: A study of SMCs phenotype in TGFβR2iSMC-Apoe mice using scRNAseq and ChIPseq Chen et al. Realted to Fig 3.

description: Time series single cell RNA sequencing analysis of smooth muscle cell (SMC) to mesenchymal cell transition process in TGFβR2iSMC-Apoe-/- and Apoe-/- mice. Chromatin immunoprecipitation DNA sequencing was done to identify the potential binding sites of DNA-associated proteins in human aortic smooth muscle cells treated with TGFb or PBS.
DOI: 10.17632/g63tckyb39
title: Long-lasting thermal activity on the brachinite parent body revealed by mineralogy, REE chemistry, and U–Pb dating of Ca-phosphates in Northwest Africa 10932

description: Dataset for figures, tables, and supplementary tables in Ito et al., 2025, GCA.
DOI: 10.6084/m9.figshare.23739306.v2
title: Online Supplemental Table S1

description: Primer sets used for gene expression assays
DOI: 10.6084/m9.figshare.28978085.v1
title: ZILLNB_Functions

description: Functions implemented in R for ZILLNB Model
DOI: 10.6084/m9.figshare.14256689.v1
title: ewDavidWmhSegmentationSlicewiseT1OnlyWeights.h5

description: T1-only weights for WMH segmentation<br>
DOI: 10.6084/m9.figshare.20014793.v1
title: Worldwide Governance Indicators

description: <em><strong>GDP Growth</strong></em> Indicator: GDP = (( GDPt- GDP t-1)/ GDP t-1)*10 <em><strong>Control Of Corruption</strong></em> Indicator: Corupption Perception Index <em><strong>Government Effectiveness</strong></em> Indicator: a measure of the quality of public services, the quality of civil services and their degree of independence from political pressure, the quality of policy formulation and implementation, and the credibility of commitments government to this policy. <em><strong>Political Stability and Absence of Violence/Teorism</strong></em> Indicator: a measure of the likelihood of a change in power that could impact not only policy sustainability but also reduce citizen’s ability to choose and replace rulers peacefull. <em><strong>Regulator Quality</strong></em> Indicator: a measure of a government's ability to formulate and implement policies and regulations and its ability to promote private sector development <em><strong>Rule of Law</strong></em> Indicator: an Index Rules of Law <br> All of the data are measuring in ratio (%) and the source are from the World Bank.
DOI: 10.6084/m9.figshare.28397084.v1
title: raw data for northern industrial parks.pdf

description: Data of volunteers of employees in industrial parks and built environments at workplaces
DOI: 10.6084/m9.figshare.7186346.v1
title: LUCLARICIN, A NEW LIGNAN FROM PHYLLANTHUS ACUMINATUS

description: The secondary metabolites of the aerial parts of Phyllanthus acuminatus Vahl (Phyllanthaceae) and the biological activity of one of them were characterized in this study. This chemical investigation led to isolation of two lignans, luclaricin (1), a new arylnaphtalene-typelignan, and justicidin B (2). The structures of isolated compounds were determined based on 1D and 2D-NMR, HRESIMS and IR. The cytotoxic activity of justicidin B was assessed against tumor cell lines (MCF-7, U251, NCI-ADR/RES, NCI-H460, OVCAR-3, HT29 and K562) and a non-tumor cell line (HaCat) using sulforhodamine B assay. Justicidin B showed strong cytotoxic activity against the tumor cell lines HT29, K562 and U251 with GI50 values of 2.28, 3.29 and 5.76 mol L-1, respectively.
DOI: 10.7266/n7s180g6
title: Dataset supporting the publication "Synthesis of Phenoxyacyl-Ethanolamides and Their Effects on Fatty Acid Amide Hydrolase Activity"
DOI: 10.17632/49n9hxshcm
title: Investigating Lysozyme Amyloid Fibril Formation and Structural Variability Dependence on its Initial Folding State Under Different pH Conditions

description: Raw data for Research Article "Investigating Lysozyme Amyloid Fibril Formation and Structural Variability Dependence on its Initial Folding State Under a Range of Different pH Conditions"
DOI: 10.17632/g6tc23z48p
title: Data for: PyFEST - a Python code for accurate frequency estimation

description: The PyFEST application written in Python language allows a simple and accurate frequency estimation of generated or measured signals. Our focus is on analyzing the vibration response of structures to detect cracks in an early state.
DOI: 10.6084/m9.figshare.3408394.v1
title: Brillouin zone boundary acoustic phonon modes of methylammonium lead iodide Perovskite (MAPI)

description: These animations show the Brillouin zone boundary acoustic phonon modes of methylammonium lead iodide perovskite (MAPI). The underlying phonon eigenmode calculations use the PBE GGA functional to relax the structure and calculate the forces.<br>In these animations, the iodine and lead atoms are coloured purple and green, respectively. The methylammonium cation (CH3NH3) is drawn with carbon as red, nitrogen as blue and hydrogen as white.<br>The material is in the pseudo-cubic structure, which we take to be representative of the room-temperature structure.<br>The pseudo-cubic unit cell is expanded into a 4x4x4 supercell, and the zone boundary (pi/a) modes shown, with neighbouring unit cells being out of phase in their motion. The motion is made by modulating the atomic positions with the phonon eigenvectors according to a sinusoidal function to produce harmonic motion.<br>The size of the displacements were arbitrarily set to make the atomic motion clear, and are not representative of the actual amplitude.<br>For calculation details, see: http://dx.doi.org/10.1103/PhysRevB.92.144308.<br>This work was developed for the following paper, where zone-boundary phonon modes were studied experimentally:http://dx.doi.org/10.1021/acsenergylett.6b00381<br><br>The supercell animations were generated by the ascii-phonons package in conjunction with the Blender ray-tracing software, using phonon eigenvectors from Phonopy.<br>See here for the underlying Phonopy data files containing the dynamic matrix:https://github.com/WMD-group/Phonons/tree/master/2015_MAPbI3
DOI: 10.17632/2hc7m7jkc5
title: Data for: Towards a general model for hyperspectral soil reflectance simulation

description: General spectral vectors derived by this study as well as example codes.
DOI: 10.17632/4dp4v7968z
title: Signal processing of quantitative continuous measurement of movements in the extremities

description: A protocol for a low-cost quantitative continuous measurement of movements in the extremities of people with Parkinson’s disease (PD) (McKay, et al., 2019) modified from the Movement Disorder Society-Sponsored Revision of the Unified Parkinson’s Disease Rating Scale (MDS-UPDRS) (Goetz, et al., 2008) was administered by trained raters certified in the MDS-UPDRS once to ten participants with PD  and again a month later to ten people with PD and eight age- and sex-matched healthy controls (HCs) (Brasic, et al., 2020). Raters certified in the MDS-UPDRS administered and scored the protocol live in person while signals from accelerometers on the extremities were recorded. Signals from the five repetitive activities were processed to generate fast Fourier transforms (FFTs) and continuous wavelet transforms (CWTs) (Harrigan, et al., Data Brief, Mendeley, 2020),

Of the 40 raters recruited for the project, 38 obtained certification in the MDS-UPDRS and 32 completed the ratings of several sets of transforms of the repetitive movements. 

The rating scale for live ratings (McKay, et al., 2019) was modified for the assessment of signals and FFTs and CWTs by visual observation. The instructions were presented to raters to consult for the rating of representations of signals and transforms. The laterality of the representations was not stated.Raters were asked to complete ratings independently at convenient times during the week.


Pilot Study 


Raters were presented two sets of 40 quizzes containing five representations of the ratings of participants with PD with single sessions for scoring of (A) output signals and FFTs and (B) CWTs (Pilot Test and Retest). Each quiz contained the panels of the x, y, and z representations of the finger and wrist or the toe and ankle of the five repetitive tasks. Each panel to be scored included six images corresponding to the signals of the three dimensions of the two accelerometers on a single extremity.Raters were presented five sets of six images of the original signal and the fast Fourier transform (FFT) or the continuous wavelet transforms (CWTs). Raters were presented either five panels of output signals and FFTs or CWTs. Panels did not include output signals and FFTs and CWTs simultaneously. Raters were instructed to score (A) output signals and FFTs and (B) CWTs analogously to the clinical coding forms as indicated the the instructions in the data.

The raters also completed the output of the ten participants with PD and eight HCs who completed a two test session (CWT Test and Retest). Raters were presented two sets of 72 quizzes containing five representations for scoring of CWTs (Pilot Test and Retest). Each quiz contained the panels of averaged signals of the x, y, and z representations of the finger and wrist or the toe and ankle of the five repetitive tasks. Each panel to be scored included two images corresponding to the signals of the three dimensions of the two accelerometers on a single extremity.
DOI: 10.17632/fcfv8yckyk
title: Аналитическая метафизика

description: Книга представляет собой первый на русском языке систематический обзор главных тем аналитической метафизики, ставшей в последние десятилетия одной из центральных и наиболее быстро развивающихся философских дисциплин в аналитической традиции. В ней затронуты проблемы универсалий, возможных миров, причинности, законов природы, материальной композиции, времени, тождества личности, свободы воли и многие другие. По каждой из проблем представлен обзор наиболее известных и влиятельных философских теорий: реализма, номинализма, модальных реализма и абстракционизма, мереологического универсализма, эндурантизма и пердурантизма, компатибилизма и инкомпатибилизма и других. Книга предполагает некоторое первоначальное знакомство с философией и может быть использована в качестве учебного пособия для студентов философских факультетов высших учебных заведений.
DOI: 10.6084/m9.figshare.13022507.v1
title: data_file.zip

description: data for our submission <br>"Optimization Modeling and Simulating of the<br>Stationary Wigner Inflow Boundary Value Problem"<br>
DOI: 10.6084/m9.figshare.24786486.v1
title: Source data.rar

description: Source data for Nature Communications manuscript NCOMMS-23-50030-T
DOI: 10.6084/m9.figshare.9974552.v1
title: Game theory-based multi-task scheduling in cloud manufacturing using an extended biogeography-based optimization algorithm

description: This is the experimental data of the manuscript entitled "Game theory-based multi-task scheduling in cloud manufacturing using an extended biogeography-based optimization algorithm". All data are generated through computer simulation and saved in the file with csv format. The data are the simulation of the real-world case. There are forty-seven instances for these experiments, which cover multiple scales. Three attributes including time, cost, and reliability of servies for achieving corresponding subtasks are shown in datasets.
DOI: 10.6084/m9.figshare.23455196.v1
title: U-series and radiocarbon data of deep-sea corals

description: This dataset contains two sheets. The first sheet contains the U-series and radiocarbon data of the Holocene Southern Ocean deep-sea corals. The second sheet contains the U-series and radiocarbon data of the Holocene North Atlantic deep-sea corals.
DOI: 10.6084/m9.figshare.24139617.v1
title: Research Data and Python code for Phanerozoic Redox Evolution

description: The repository contains geochemical datasets used to reconstruct Phanerozoic marine redox evolution, together with source code used to conduct data analyses.
DOI: 10.6084/m9.figshare.3517847.v1
title: Supplement 1. Data on species occurrence and trait information of northern Baltic Sea coastal benthos.

description: File List Supplement_1_Tornroos_Bonsdorff_2012.csv (md5: 377093d5b1e7495b53cec4b11f6c2533)Description The Supplement_1_Tornroos_Bonsdorff_2012.csv file is a comma-delimited file. It contains data on species occurence and trait information of northern Baltic Sea coastal benthos. In total 56 macrofaunal taxa were used for analysis, however, notes on other species found in the database and taxa noted in the area by other sources are also included. Frequency and mean abundance for all areas and visits during a 16-year period (1988–2004) are shown and frequency occurence of taxa above 1% is indicated. Notes on other occurring species in the area are also included either as (i) other taxa noted but not included in analysis or (ii) other benthic taxa noted in the area but not noted in the data set (not included in analysis). In total 25 traits, summing up to 102 modalities, were included and taxa scores (codings) are displayed for the 56 taxa used in the analyses. Traits covered were morphological, life-history, living, feeding, moving, and behavioral ones. Codes in the trait scoring part indicate type of literature source used for scoring; (I) pre-reviewed published sources (articles, books, etc.), (II) information based on the species phenotype, e.g., "body design", or based on other traits, and (III) expert knoledge or unpublished sources. (Note that the feeding traits "Feeding position" and "Feeding habit" [light gray] should not necessarily be used together in an analysis, since "Feeding habit" can be explained by using both "Feeding position" and "Resource capture method"). Column definitions: 1. Phylum<br> 2. Group (order)<br> 3. Species (TAXA)<br> 4. – 10. Areas<br> 11. – 12. Frequency and Mean ind.<sup>-2</sup> abundance<br> 13. – 138. Traits, modalities and trait codings<br> 139. – 142. Summaries of number of modelaities scored Presence of a species is presented by an "X"<br> Scale for codings is 0–3
DOI: 10.6084/m9.figshare.875389.v1
title: Reflections on Financial analysis of economic health - Polish entities case written by: M. Kocot, J. Ochmann, K. Woźniak

description: The review refers to a study performed students from Wroclaw University of Economics: M. Kocot, J. Ochmann, K. Woźniak. They made attempt to analyse financial health of three Polish entities on the basis of an article: A Financial Health Index for Achieving Financial Sustainability written by John Zietlow. A nonprofit, a financial institution and a manufacturing company were taken into consideration.