cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21299502.v2
title: Resolution, conflict and rate shifts: insights from a densely sampled plastome phylogeny for Rhododendron (Ericaceae)

description: • <strong>Background and Aims</strong> <em>Rhododendron </em>is a species-rich and taxonomically challenging genus due to recent adaptive radiation and frequent hybridization. A well-resolved phylogenetic tree would help to understand the diverse history of <em>Rhododendron </em>in the Himalaya–Hengduan Mountains where the genus is most diverse. • <strong>Methods </strong>We reconstructed the phylogeny based on plastid genomes with broad taxon sampling, covering 161 species representing all eight subgenera and all 12 sections, including ~45 % of the <em>Rhododendron </em>species native to the Himalaya–Hengduan Mountains. We compared this phylogeny with nuclear phylogenies to elucidate reticulate evolutionary events and clarify relationships at all levels within the genus. We also estimated the timing and diversification history of <em>Rhododendron</em>, especially the two species-rich subgenera <em>Rhododendron </em>and <em>Hymenanthes </em>that comprise &gt;90 % of <em>Rhododendron </em>species in the Himalaya–Hengduan Mountains. • <strong>Key Results </strong>The full plastid dataset produced a well-resolved and supported phylogeny of <em>Rhododendron</em>. We identified 13 clades that were almost always monophyletic across all published phylogenies. The conflicts between nuclear and plastid phylogenies suggested strongly that reticulation events may have occurred in the deep lineage history of the genus. Within <em>Rhododendron</em>, subgenus <em>Therorhodion </em>diverged first at 56 Mya, then a burst of diversification occurred from 23.8 to 17.6 Mya, generating ten lineages among the component 12 clades of core <em>Rhododendron</em>. Diversification in subgenus <em>Rhododendron </em>accelerated c. 16.6 Mya and then became fairly continuous. Conversely, <em>Hymenanthes </em>diversification was slow at first, then accelerated very rapidly around 5 Mya. In the Himalaya–Hengduan Mountains, subgenus <em>Rhododendron </em>contained one major clade adapted to high altitudes and another to low altitudes, whereas most clades in <em>Hymenanthes </em>contained both low- and high-altitude species, indicating greater ecological plasticity during its diversification. • <strong>Conclusions </strong>The 13 clades proposed here may help to identify specific ancient hybridization events. This study will help to establish a stable and reliable taxonomic framework for <em>Rhododendron</em>, and provides insight into what drove its diversification and ecological adaption. Denser sampling of taxa, examining both organelle and nuclear genomes, is needed to better understand the divergence and diversification history of <em>Rhododendron</em>.
DOI: 10.6084/m9.figshare.21299502.v3
title: Resolution, conflict and rate shifts: insights from a densely sampled plastome phylogeny for Rhododendron (Ericaceae)

description: • <strong>Background and Aims</strong> <em>Rhododendron </em>is a species-rich and taxonomically challenging genus due to recent adaptive radiation and frequent hybridization. A well-resolved phylogenetic tree would help to understand the diverse history of <em>Rhododendron </em>in the Himalaya–Hengduan Mountains where the genus is most diverse. • <strong>Methods </strong>We reconstructed the phylogeny based on plastid genomes with broad taxon sampling, covering 161 species representing all eight subgenera and all 12 sections, including ~45 % of the <em>Rhododendron </em>species native to the Himalaya–Hengduan Mountains. We compared this phylogeny with nuclear phylogenies to elucidate reticulate evolutionary events and clarify relationships at all levels within the genus. We also estimated the timing and diversification history of <em>Rhododendron</em>, especially the two species-rich subgenera <em>Rhododendron </em>and <em>Hymenanthes </em>that comprise &gt;90 % of <em>Rhododendron </em>species in the Himalaya–Hengduan Mountains. • <strong>Key Results </strong>The full plastid dataset produced a well-resolved and supported phylogeny of <em>Rhododendron</em>. We identified 13 clades that were almost always monophyletic across all published phylogenies. The conflicts between nuclear and plastid phylogenies suggested strongly that reticulation events may have occurred in the deep lineage history of the genus. Within <em>Rhododendron</em>, subgenus <em>Therorhodion </em>diverged first at 56 Mya, then a burst of diversification occurred from 23.8 to 17.6 Mya, generating ten lineages among the component 12 clades of core <em>Rhododendron</em>. Diversification in subgenus <em>Rhododendron </em>accelerated c. 16.6 Mya and then became fairly continuous. Conversely, <em>Hymenanthes </em>diversification was slow at first, then accelerated very rapidly around 5 Mya. In the Himalaya–Hengduan Mountains, subgenus <em>Rhododendron </em>contained one major clade adapted to high altitudes and another to low altitudes, whereas most clades in <em>Hymenanthes </em>contained both low- and high-altitude species, indicating greater ecological plasticity during its diversification. • <strong>Conclusions </strong>The 13 clades proposed here may help to identify specific ancient hybridization events. This study will help to establish a stable and reliable taxonomic framework for <em>Rhododendron</em>, and provides insight into what drove its diversification and ecological adaption. Denser sampling of taxa, examining both organelle and nuclear genomes, is needed to better understand the divergence and diversification history of <em>Rhododendron</em>.
DOI: 10.6084/m9.figshare.21299502.v4
title: Resolution, conflict and rate shifts: insights from a densely sampled plastome phylogeny for Rhododendron (Ericaceae)

description: • <strong>Background and Aims</strong> <em>Rhododendron </em>is a species-rich and taxonomically challenging genus due to recent adaptive radiation and frequent hybridization. A well-resolved phylogenetic tree would help to understand the diverse history of <em>Rhododendron </em>in the Himalaya–Hengduan Mountains where the genus is most diverse. • <strong>Methods </strong>We reconstructed the phylogeny based on plastid genomes with broad taxon sampling, covering 161 species representing all eight subgenera and all 12 sections, including ~45 % of the <em>Rhododendron </em>species native to the Himalaya–Hengduan Mountains. We compared this phylogeny with nuclear phylogenies to elucidate reticulate evolutionary events and clarify relationships at all levels within the genus. We also estimated the timing and diversification history of <em>Rhododendron</em>, especially the two species-rich subgenera <em>Rhododendron </em>and <em>Hymenanthes </em>that comprise &gt;90 % of <em>Rhododendron </em>species in the Himalaya–Hengduan Mountains. • <strong>Key Results </strong>The full plastid dataset produced a well-resolved and supported phylogeny of <em>Rhododendron</em>. We identified 13 clades that were almost always monophyletic across all published phylogenies. The conflicts between nuclear and plastid phylogenies suggested strongly that reticulation events may have occurred in the deep lineage history of the genus. Within <em>Rhododendron</em>, subgenus <em>Therorhodion </em>diverged first at 56 Mya, then a burst of diversification occurred from 23.8 to 17.6 Mya, generating ten lineages among the component 12 clades of core <em>Rhododendron</em>. Diversification in subgenus <em>Rhododendron </em>accelerated c. 16.6 Mya and then became fairly continuous. Conversely, <em>Hymenanthes </em>diversification was slow at first, then accelerated very rapidly around 5 Mya. In the Himalaya–Hengduan Mountains, subgenus <em>Rhododendron </em>contained one major clade adapted to high altitudes and another to low altitudes, whereas most clades in <em>Hymenanthes </em>contained both low- and high-altitude species, indicating greater ecological plasticity during its diversification. • <strong>Conclusions </strong>The 13 clades proposed here may help to identify specific ancient hybridization events. This study will help to establish a stable and reliable taxonomic framework for <em>Rhododendron</em>, and provides insight into what drove its diversification and ecological adaption. Denser sampling of taxa, examining both organelle and nuclear genomes, is needed to better understand the divergence and diversification history of <em>Rhododendron</em>.
DOI: 10.6084/m9.figshare.21299505
title: Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy

description: To improve our understanding of the origin and evolution of mycoheterotrophic plants, we here present the chromosome-scale genome assemblies of two sibling orchid species: partially mycoheterotrophic <em>Platanthera zijinensis</em> and holomycoheterotrophic <em>Platanthera guangdongensis</em>. Comparative analysis shows that mycoheterotrophy is associated with increased substitution rates and gene loss, and the deletion of most photoreceptor genes and auxin transporter genes might be linked to the unique phenotypes of fully mycoheterotrophic orchids. Conversely, trehalase genes that catalyse the conversion of trehalose into glucose have expanded in most sequenced orchids, in line with the fact that the germination of orchid non-endosperm seeds needs carbohydrates from fungi during the protocorm stage. We further show that the mature plant of <em>P. guangdongensis</em>, different from photosynthetic orchids, keeps expressing trehalase genes to hijack trehalose from fungi. Therefore, we propose that mycoheterotrophy in mature orchids is a continuation of the protocorm stage by sustaining the expression of trehalase genes. Our results shed light on the molecular mechanism underlying initial, partial and full mycoheterotrophy.
DOI: 10.6084/m9.figshare.21299505.v1
title: Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy

description: To improve our understanding of the origin and evolution of mycoheterotrophic plants, we here present the chromosome-scale genome assemblies of two sibling orchid species: partially mycoheterotrophic <em>Platanthera zijinensis</em> and holomycoheterotrophic <em>Platanthera guangdongensis</em>. Comparative analysis shows that mycoheterotrophy is associated with increased substitution rates and gene loss, and the deletion of most photoreceptor genes and auxin transporter genes might be linked to the unique phenotypes of fully mycoheterotrophic orchids. Conversely, trehalase genes that catalyse the conversion of trehalose into glucose have expanded in most sequenced orchids, in line with the fact that the germination of orchid non-endosperm seeds needs carbohydrates from fungi during the protocorm stage. We further show that the mature plant of <em>P. guangdongensis</em>, different from photosynthetic orchids, keeps expressing trehalase genes to hijack trehalose from fungi. Therefore, we propose that mycoheterotrophy in mature orchids is a continuation of the protocorm stage by sustaining the expression of trehalase genes. Our results shed light on the molecular mechanism underlying initial, partial and full mycoheterotrophy.
DOI: 10.5281/zenodo.7162176
title: Pertemuan 4_10 Oktober 2022_ Pusat Tanggung Jawab: Pusat Pendapatan dan Beban

description: <strong>Capaian Pembelajaran (CPMK)</strong> Mahasiswa mampu mejelaskan pusat pertanggungjawaban Pusat Tanggung Jawab: Pusat Pendapatan dan Beban <strong>Pusat Tanggung Jawab</strong> Pusat tanggung jawab merupakan organisasi yang di pimpin oleh seorang manajer yang bertanggung jawab terhadap aktivitas yang di lakukan. Pada dasarnya, perusahaan merupakan sekumpulan pusat-pusat tanggung jawab, yang masing-masing di wakili oleh sebuah kotak dalam bagan organisasi, pusat-pusat tanggung jawab tersebut kemudian membentuk suatu hierarki.
DOI: 10.5281/zenodo.7162175
title: Pertemuan 4_10 Oktober 2022_ Pusat Tanggung Jawab: Pusat Pendapatan dan Beban

description: <strong>Capaian Pembelajaran (CPMK)</strong> Mahasiswa mampu mejelaskan pusat pertanggungjawaban Pusat Tanggung Jawab: Pusat Pendapatan dan Beban <strong>Pusat Tanggung Jawab</strong> Pusat tanggung jawab merupakan organisasi yang di pimpin oleh seorang manajer yang bertanggung jawab terhadap aktivitas yang di lakukan. Pada dasarnya, perusahaan merupakan sekumpulan pusat-pusat tanggung jawab, yang masing-masing di wakili oleh sebuah kotak dalam bagan organisasi, pusat-pusat tanggung jawab tersebut kemudian membentuk suatu hierarki.
DOI: 10.34740/kaggle/ds/2532282
title: Covid_19 Tweets Dataset
DOI: 10.5281/zenodo.6992868
title: Spatially Aggregated Rain Radar Forecast for the Koeln Weiden, Germany

description: radar_forecast.csv contains time series data generated by spatial aggregation of rain radar forecasts constructed using robust local optical flow extrapolation.
DOI: 10.5281/zenodo.6992693
title: Wastewater Treatment Plant Inflow Rate, Network Water Levels and Rain Rate for Koeln Weiden, Germany

description: wtp_network_rain.csv contains time series data of measured wastewater treatment plant inflow rates, water levels from multiple locations within the wastewater sewer network and rain rate measured from a rain recorder located at the wastewater treatment plant.
DOI: 10.21227/nv74-9738
title: Collaborative Scheduling of Port Integrated Energy and Container Logistics

description: This dataset contains detailed parameters and data of the integrated energy system and container Logistics system in a port.
DOI: 10.5517/ccdc.csd.cc2csjyn
title: CCDC 2198332: Experimental Crystal Structure Determination

description: Related Article: David Van Craen, Malavika G. Kalarikkal, Julian J. Holstein|2022|J.Am.Chem.Soc.|144|18135|doi:10.1021/jacs.2c08579
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c0ygt
title: CCDC 2175656: Experimental Crystal Structure Determination

description: Related Article: Irina S. Aliyarova, Elena Yu. Tupikina, Natalia S. Soldatova, Daniil M. Ivanov, Pavel S. Postnikov, Mekhman Yusubov, Vadim Yu. Kukushkin|2022|Inorg.Chem.|61|15398|doi:10.1021/acs.inorgchem.2c01858
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c9mbn
title: CCDC 2183991: Experimental Crystal Structure Determination

description: Related Article: Junichi Yanagisawa, Kyosuke Tanaka, Hideaki Kano, Kiyoshi Miyata, Benjamin Le Ouay, Ryo Ohtani, Masaaki Ohba|2022|Inorg.Chem.|61|15638|doi:10.1021/acs.inorgchem.2c02555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2chzpk
title: CCDC 2190109: Experimental Crystal Structure Determination

description: Related Article: Xinyu Li, Yan Guan, Xiaotong Li, Yongping Fu|2022|J.Am.Chem.Soc.|144|18030|doi:10.1021/jacs.2c07535
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2chzql
title: CCDC 2190110: Experimental Crystal Structure Determination

description: Related Article: Xinyu Li, Yan Guan, Xiaotong Li, Yongping Fu|2022|J.Am.Chem.Soc.|144|18030|doi:10.1021/jacs.2c07535
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2chzsn
title: CCDC 2190112: Experimental Crystal Structure Determination

description: Related Article: Xinyu Li, Yan Guan, Xiaotong Li, Yongping Fu|2022|J.Am.Chem.Soc.|144|18030|doi:10.1021/jacs.2c07535
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2chztp
title: CCDC 2190113: Experimental Crystal Structure Determination

description: Related Article: Xinyu Li, Yan Guan, Xiaotong Li, Yongping Fu|2022|J.Am.Chem.Soc.|144|18030|doi:10.1021/jacs.2c07535
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2chzrm
title: CCDC 2190111: Experimental Crystal Structure Determination

description: Related Article: Xinyu Li, Yan Guan, Xiaotong Li, Yongping Fu|2022|J.Am.Chem.Soc.|144|18030|doi:10.1021/jacs.2c07535
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c9m9m
title: CCDC 2183990: Experimental Crystal Structure Determination

description: Related Article: Junichi Yanagisawa, Kyosuke Tanaka, Hideaki Kano, Kiyoshi Miyata, Benjamin Le Ouay, Ryo Ohtani, Masaaki Ohba|2022|Inorg.Chem.|61|15638|doi:10.1021/acs.inorgchem.2c02555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/4297929
title: YouTube Daily
DOI: 10.6084/m9.figshare.21299523
title: Electrical pulse stimulation of cultured cells as a method for mimicking exercise: A systematic review, meta-regression and meta-analysis- Raw Data for Meta-analysis and Metaregression

description: We performed meta-analyses to calculate the differences between control (non-stimulated) and EPS-stimulated cells for the biological indices having enough data for such an analysis. In cases of not reported values, we used WebPlotDigitizer (v4.5,2021) to extract the information from the given graphs.In cases where the number of studies was not identified, we assumed that they were conducted in triplicates and in cases of a range of number of studies, we used the mean. Since different methods and scales were utilized in the eligible studies, we used standardized mean differences (SMDs) instead of absolute mean differences to standardize our findings to uniform scale. Missing SDs were imputed using the average coefficient of variation from all complete cases.
DOI: 10.5281/zenodo.7159717
title: WeChat Mini-App Consistency Detection Dataset

description: A dataset for WeChat mini-App consistency detection. Paper(posting): Do as You Say: Consistency Detection of Data Practice in Program Code and Privacy Policy in Mini-App
DOI: 10.5281/zenodo.7159718
title: WeChat Mini-App Consistency Detection Dataset

description: A dataset for WeChat mini-App consistency detection. Paper(posting): Do as You Say: Consistency Detection of Data Practice in Program Code and Privacy Policy in Mini-App
DOI: 10.5281/zenodo.6187716
title: WaterGEMS models for flow starved water transmission network

description: <strong>This data contains WaterGEMS models of a Water Transmission Network (WTN) in India. It deploys a newly developed modeling approach, Pressure Driven Analysis for Flow Straved Condition(PDA-FSC). It is used for evaluating the performance of flow-starved WTN. </strong>
DOI: 10.5281/zenodo.6918192
title: WaterGEMS models for flow starved water transmission network

description: <strong>This data contains WaterGEMS models of a Water Transmission Network (WTN) in India. It deploys a newly developed modeling approach, Pressure Driven Analysis for Flow Straved Condition(PDA-FSC). It is used for evaluating the performance of flow-starved WTN. </strong>
DOI: 10.5281/zenodo.7162154
title: WaterGEMS models for flow starved water transmission network

description: <strong>This data contains WaterGEMS models of a Water Transmission Network (WTN) in India. It deploys a newly developed modeling approach, Pressure Driven Analysis for Flow Straved Condition(PDA-FSC). It is used for evaluating the performance of flow-starved WTN. </strong>
DOI: 10.5281/zenodo.7162335
title: Supporting Dataset for Fault Friction Derived from Fault Bend Influence on Coseismic Slip During the 2019 Ridgecrest Mw 7.1 Mainshock

description: Supporting Dataset for Fault Friction Derived from Fault Bend Influence on Coseismic Slip During the 2019 Ridgecrest M<sub>w</sub> 7.1 Mainshock, JGR See Readme text files for details.
DOI: 10.5281/zenodo.7162334
title: Supporting Dataset for Fault Friction Derived from Fault Bend Influence on Coseismic Slip During the 2019 Ridgecrest Mw 7.1 Mainshock

description: Supporting Dataset for Fault Friction Derived from Fault Bend Influence on Coseismic Slip During the 2019 Ridgecrest M<sub>w</sub> 7.1 Mainshock, JGR See Readme text files for details.