cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2t4gv/1
title: surfperch FA data

description: Raw data collected from images of kelp perch used to calculate FA. Namely, the number of fin rays counted on the left and right pectoral fins of each fish, organized by location (Palos Verdes Peninsula or Catalina Island), and by collection (initial or survivors). There are two sets of counts for each fish because the fin rays were counted by two independent observers (ARC and DRC).
DOI: 10.5061/dryad.2t4gv/2
title: bootstrap estimates of corrected FA

description: This is the R code used to calculate FA (Left-Right) based on counted fin rays in right and left pectoral fins of all four samples (two from the Palos Verdes Peninsula: initial and survivors, and two from Catalina Island: initial and survivors). There are two independent counts and therefore two estimates of FA. The variance between these two estimates was used to correct for measurement error. The corrected FA estimate was then also corrected for the presence of directional asymmetry, and the samples were bootstrapped to give a statistically significant estimate of the relative size of FA between the two populations at the time of the two different sampling events.
DOI: 10.5061/dryad.3kq05/2
title: Yakub_Tiffin_GCB_GBS_forarlequin

description: Variants identified by GBS and used for pop gen analyses (Dxy, Instruct)
DOI: 10.5061/dryad.41m3s/4
title: Bumblebee visits with temperature data

description: Data frame with no. bumblebee visits & temperature (cosinor analysis)
DOI: 10.5061/dryad.41m3s/5
title: Honeybee images (EXIF data)

description: Data frame with metadata from images with honeybees (EXIF data)
DOI: 10.5061/dryad.41m3s/6
title: ReadMe file

description: Please review this file for important information of the data package as a whole, with explanation of each individual data file.
DOI: 10.5061/dryad.65d97/1
title: rfseq_protocol (GBS)

description: An updated protocol for the Genotyping By Sequencing approach we employed
DOI: 10.5061/dryad.65d97/2
title: loxia_gprobs_wids
DOI: 10.5061/dryad.686sq/1
title: Dalziel_2016_RawData

description: File with all raw data and notes on sample collection. Used to calculate residuals or for data transformations if required.
DOI: 10.5061/dryad.686sq/2
title: Dalziel_2016_26ResponseVariables

description: File with data for the 26 response variables used in univariate and multivariate analyses and categorical variables. Residuals are used when variables are significantly correlated with fish mass. If data showed heteroscedasticity we log transformed the response variable or obtained log-log residuals.
DOI: 10.5061/dryad.686sq/3
title: Dalziel_2016_26ResponseVariablesNumeric

description: Same as "Dalziel_2016_26ResponseVariables.csv", but numeric values only to facilitate the creation of the correlation plot (Figure 6) or missing data plot (Figure S1).
DOI: 10.5061/dryad.686sq/4
title: Dalziel_2016_StandardizedData

description: File with standardized data for MANOVA, DFA, PCA. These data can also be calculated from the file "Dalziel_2016_26ResponseVariables.csv" using the R code provided.
DOI: 10.5061/dryad.686sq/5
title: Dalziel_2016_DFA_Results

description: File with appropriate number of rows (85) for output from DFA (Figure 7) to allow for plots of the first and second linear discriminant.
DOI: 10.5061/dryad.686sq/6
title: Dalziel_etal_2016_Rcode

description: R code for all data transformations, statistical tests and plots.
DOI: 10.5061/dryad.70fg7/1
title: Guppy Data for Dryad

description: Guppy demographic data
DOI: 10.5061/dryad.8d1p9/1
title: Metabarcoding_Data

description: Trimmed, quality filtered, chimera filtered, abundance filtered, and unique 12SrRNA metabarcoding reads for each DNA extract (including controls) sequenced.
DOI: 10.5061/dryad.9522r/1
title: Data for suppression of reproductive characteristics of Mikania micrantha by sweet potato competition

description: Data for the following parameters for Mikania micrantha in experiments when grown with sweet potato in different ratios (each set of parameters on a separate tab on the excel file): flowering phenology, pollinators, flowering characteristics, seeds, population
DOI: 10.5061/dryad.fg818/1
title: Gver microsatellite genotypes

description: Microsatellite genotypes for all thalli
DOI: 10.5061/dryad.g45mc/1
title: Climate data used for Maxent and niche overlap analysis

description: Longitude, latitude, and 19 bioclimatic variables of collection points of two varieties of Castanopsis carlesii.  Provided data include the longitude and latitude for each location, and bioclimatic variables ('BIO_1' to 'BIO_19') as extracted from the 'WorldClim' database (for definitions see: http://www.worldclim.org/bioclim). Further information about WorldClim at Hijmans, R.J., S.E. Cameron, J.L. Parra, P.G. Jones and A. Jarvis, 2005. Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology 25: 1965-1978. http://dx.doi.org/10.1002/joc.1276
DOI: 10.5061/dryad.g4n11/1
title: Data on fruit and seed traits and fruiting phenology
DOI: 10.5061/dryad.gs51v/1
title: Microbial life tree (16S OTU98.5)

description: Phylogenetic tree (nwk format) used to show pathway conservation analysis on central metabolism
DOI: 10.5061/dryad.gs51v/2
title: Microbial life tree (16S OTU98.5) labels

description: File contains the list of genomes and their RAST given ids
DOI: 10.5061/dryad.h4s6t/2
title: Data from: Does one model fit all? patterns of beech mortality in natural forests of three European regions
DOI: 10.5061/dryad.h4s6t/3
title: Data from: Does one model fit all? patterns of beech mortality in natural forests of three European regions
DOI: 10.5061/dryad.h4s6t/4
title: Data from: Does one model fit all? patterns of beech mortality in natural forests of three European regions
DOI: 10.5061/dryad.h75v1/1
title: Rana draytonii behavior data Behavioral Ecology

description: Data file provides information on proportion of tadpoles swimming in each behavioral test, under experimental and control conditions.  Columns include source population, evolutionary experience ('E'xperienced and 'N'aive), tank number, Stimulus (BF [bullfrog, experimental] or control [clean water], Round (test interval), and proportion swimming at each observation.
DOI: 10.5061/dryad.hk0rt/1
title: Comprehensive microsatellite allele table for 11 loci

description: Microsatellite alleles used in study for each sampled site.  Some individuals were less successful and may have been removed before final analysis. Location information can be found in the main paper (GPS, etc.).
DOI: 10.5061/dryad.j23g3/1
title: Anthropogenic noise, but not artificial light levels predicts song behaviour in an equatorial bird.Data.

description: Onset time of the dawn chorus of rufous-collared sparrows, artificial light levels and noise levels of their territories in May-June and November-December in the city of Bogota (place 1 to 33) and rural areas in the Colombian Andes. The exact coordinates of the rural areas are unknown, the territories of rufous-collared sparrows were found in the surroundings of the village Nutrias that belong to the town Susa, Cundinamarca (5° 30′ 0″ N, 73° 50′ 0″ W).
DOI: 10.5061/dryad.j71qr/1
title: data_sexual_abstinence_Cperspicillata

description: Different variables used in the paper
DOI: 10.5061/dryad.k05qb/3
title: Supplemental Appendix 1

description: Preliminary assingment to sections according previously published data (see main text for details).
DOI: 10.5061/dryad.k05qb/4
title: Supplemental Appendix 2

description: TDI values recovered for sections when tested on the query tree.
DOI: 10.5061/dryad.k05qb/5
title: Supplemental Data 2

description: ETS sequences matrix
DOI: 10.5061/dryad.k05qb/6
title: Supplemental Data 3

description: ITS sequences matrix
DOI: 10.5061/dryad.k05qb/7
title: Supplemental Data 4

description: matK sequences matrix
DOI: 10.5061/dryad.k186f/1
title: Morphological trait measurements of cordyline lizards

description: Measurements of 21 morphological traits of cordyline lizards obtained using micro-CT as well as residuals and PC-scores used as input for phylogenetic comparative analyses.
DOI: 10.5061/dryad.qj716/7
title: Hasenjager and Dugatkin 2016 Individual Level Variables

description: Information on each individual fish is provided. This data includes: treatment, group, experimental block, whether or not the individual was familiar with its group members, standard length (mm.), the proportion of time spent active, the proportion of time engaged in shoaling, and the number of elapsed days since that individual's last habituation session. See text for additional details.
DOI: 10.5061/dryad.qj716/8
title: Hasenjager and Dugatkin 2016 Read Me

description: Provides a ReadMe file to aid interpretation and use of the associated data files.
DOI: 10.5061/dryad.r6d4j/1
title: amphibians_BIO1_min_max

description: Mininum and maximum annual temperature (BIO1 from worldclim) compiled for all the distributions of amphibians species present in the IUCN red list website
DOI: 10.5061/dryad.r6d4j/2
title: birds_BIO1_min_max

description: Mininum and maximum annual temperature (BIO1 from worldclim) compiled for all the distributions of birds species present in the Birdlife website
DOI: 10.5061/dryad.r6d4j/3
title: mammals_BIO1_min_max

description: Mininum and maximum annual temperature (BIO1 from worldclim) compiled for all the distributions of mammals species present in the IUCN red list website
DOI: 10.5061/dryad.rm382/1
title: Frog resurvey dataset

description: For each of the 7678 surveys conducted during the study, abundance of Rana sierrae adults, subadults, and tadpoles, as well as survey/site characteristics. Data fields are described in the associated ReadMe file.
DOI: 10.5061/dryad.rm382/2
title: Frog resurvey: R code used in analysis of frog population trends

description: R code to run primary trend analyses in Knapp et al. (2016). Models were fit using the package 'INLA' version 0.0-1420281647. An adjacency file (W.dat) is needed to model the spatial random effects, and is provided as part of this data package.
DOI: 10.5061/dryad.t2s33/4
title: Table S1. Number of apomorphies inferred under DELTRAN optimiziation.

description: Table S1. Number of apomorphies inferred under DELTRAN optimiziation on the two basal branches within Squamata under different rootings. Rootings specified as "collapsed" refer to topologies in which Squamata is treated as two unresolved clades, whereas all others represent results from fully-resolved topologies.
DOI: 10.5061/dryad.tb0c7/1
title: master.datafile

description: Data on behaviour given by and received by focal individuals before, during, and after introduction to a foreign colony in the termite Pterotermes occidentis
DOI: 10.5061/dryad.tc6r3/1
title: Use of NIRS data as boundary conditions for CFD simulations (PMID27376865)

description: This Excel file contains the following 4 worksheets that allow researchers to confirm, extend and apply the findings from PMID 27376865: Worksheet 1 - Windkessel parameters from Table 1 of the paper; Worksheet 2 - A blood flow distribution calculator that uses NIRS data as input; Worksheet 3 - Ensemble-averaged (n=6) blood flow waveforms in the ascending aorta under resting blood flow conditions and three levels of exercise; Worksheet 4 - A waveform creator that automatically generates ascending aortic blood flow waveforms during rest and exercise using cardiac output and heart rate data from any patient.
DOI: 10.5061/dryad.tt5q1/1
title: All data from Biol Lett MS

description: This includes data from all parts of the experiment (behavioural, thermal) - notes within file describing data
DOI: 10.5061/dryad.226d0/1
title: Data_packet

description: This is a zipped folder that contains the following items:1) dataset, input file, and results for analyses of community similarity between different habitat types. 2) table of distribution patterns of the species studied. 3) tabular summary of northern/southern distribution limits of the species studied. 4) dataset, input file, and results for analyses of collector similarity between Buck (B), Harris (H) and Lendemer (L). 5) dataset, input file, and results for analyses of community similarity between sites. 6) dataset and tabular summary of species traits scored for this study. 7) dataset and tabular summary of for site data, taxonomic diversity, species data, and species occurence. 8) dataset of existing vouchers from CNALH (both original download and cleaned data 9) csv files for each species used to produce distribution maps compiled figures with four maps per plate.
DOI: 10.5061/dryad.26127/1
title: Raw territory and noise data

description: Data is provided for average territories/ha for 30 bird species; broken down by the control and experimental (playback) treatment. Raw noise event data is also provided, followed by PCA1 and PCA2.
DOI: 10.5061/dryad.38j37/1
title: SSR
DOI: 10.5061/dryad.38j37/2
title: ResistanceTraits
DOI: 10.5061/dryad.3hk99/1
title: Dye-normalised fluorescence qPCR data

description: Dye-normalised fluorescence qPCR data
DOI: 10.5061/dryad.3pm63/1
title: NetCDFs of a functional biome map and the underlying data structures used to create it.

description: Tar archive containing netcdf files. See readme file for further details
DOI: 10.5061/dryad.405g1/1
title: TimetreeOfLife2015

description: Downloaded from here http://www.timetree.org/book#treefiles. Hedges, S. B., Marin, J., Suleski, M., Paymer M., Kumar, S. 2015. Tree of Life Reveals Clock-Like Speciation and Diversification. Mol Biol Evol (2015) 32: 835-845
DOI: 10.5061/dryad.405g1/2
title: Character State Coding Holocentric vs. Monocentric

description: This is table cvs format. In the column are found species names as termed in the TimeTreeofLife2015. In the second and third column there are character state coding holocentric (1) vs. monocentric (0) for all species in the TimeTreeofLife2015. Coding in the column 3 was designed to avoid false holocentric chromosome positives and it was used for the analyses in the paper.
DOI: 10.5061/dryad.42qq0/1
title: Landmark points for cane toad bones

description: A collection of landmarked .pts files for all cane toad bones used in this study.
DOI: 10.5061/dryad.42qq0/2
title: Morphologika output files

description: Output from generalized Procrustes analysis in Morphologika (version 2.5) on landmark data
DOI: 10.5061/dryad.43rv3/1
title: Microsatellite profiles of adult and progeny Eucalyptus caesia

description: The data file is an excel spreadsheet containing two data sets. First, UTM co-ordinates (easting and northing), the number of stems counted per plant, and microsatellite profiles of adult Eucalyptus caesia at Boyagin Nature Reserve. On the same sheet below are the microsatellite profiles of progeny, coded by maternal ID, fruit number, and replicate number within the multi-seeded fruit. Microsatellite profiles of maternal plants are provided above those of the progeny to facilitate maternal/progeny comparison.
DOI: 10.5061/dryad.48km5/1
title: Dataset of Kentish Plover behaviour & breeding parameters

description: This is the datafile used in the paper. We did not change the variable names as these are used in the model descriptions provided in the table 2.
DOI: 10.5061/dryad.4g7qh/1
title: Conserved lands data used in linear regression models.

description: The file contains photo user days, survey user days and landscape attributes for conserved lands in Vermont, USA.
DOI: 10.5061/dryad.591gf/1
title: Movie1-medaka anterior gut

description: Aghaallaei-Gruhl et al-development-DEVELOP:2015:134098-movies
DOI: 10.5061/dryad.591gf/2
title: movie2-medaka-posterior gut

description: Aghaallaei-Gruhl et al-development-DEVELOP:2015:134098-movie-2
DOI: 10.5061/dryad.591gf/3
title: movie3-medaka-GaudiRSG-10dpi10dai

description: Aghaallaei-Gruhl et al-development-DEVELOP:2015:134098-movie-3
DOI: 10.5061/dryad.5pt57/1
title: Tokyo_Osaka_Data

description: The health and Food-purchasing survey. Exact date has been masked by a small variable to protect participant identity. The variables j1, j2, j3, etc. stand for the JAN code (Japan Article Number code) which is a barcode standard compatible with the EAN (European Article Number). The JAN code has been masked so as not to identify the individual food products.
DOI: 10.5061/dryad.5sr24/1
title: R scripts for maximum-likelihood estimation of occupancy distributions
DOI: 10.5061/dryad.65d97/3
title: bam_files

description: tgz directory containing .bam assembly files.
DOI: 10.5061/dryad.68864/1
title: Gal4x4

description: In this zip folder are the gal4x4 images used to generate the data in the paper, in Zeiss lsm format.  They are sorted into folders and subfolders by genotype, and named according to the date taken.  The Zeiss lsm format has other metadata (voxel size, image size, etc) associated with it.  The files were analyzed using Matlab code available on the Reeveslab website.
DOI: 10.5061/dryad.68864/2
title: Gal4x2

description: In this zip folder are the gal4x2 images used to generate the data in the paper, in Zeiss lsm format.  They are sorted into folders and subfolders by genotype, and named according to the date taken.  The Zeiss lsm format has other metadata (voxel size, image size, etc) associated with it.  The files were analyzed using Matlab code available on the Reeveslab website.
DOI: 10.5061/dryad.68864/3
title: Gal3

description: In this zip folder are the gal3 images used to generate the data in the paper, in Zeiss lsm format.  They are sorted into folders and subfolders by genotype, and named according to the date taken.  The Zeiss lsm format has other metadata (voxel size, image size, etc) associated with it.  The files were analyzed using Matlab code available on the Reeveslab website.
DOI: 10.5061/dryad.68b00/1
title: Comparison of trapping methods
DOI: 10.5061/dryad.68b00/2
title: Detectability and body size estimation
DOI: 10.5061/dryad.68b00/3
title: Detectability of soil microarthropods in field
DOI: 10.5061/dryad.6rj63/1
title: Survival data
DOI: 10.5061/dryad.6tq74/1
title: Ochrophyta_family_n
DOI: 10.5061/dryad.6tq74/10
title: TotalAlkalinity_CO2sys_macroresults_12
DOI: 10.5061/dryad.6tq74/2
title: Ochrophyta_family_pH_13c_raw_data
DOI: 10.5061/dryad.6tq74/3
title: Ochrophyta_family_pH_phylogeny_input
DOI: 10.5061/dryad.6tq74/4
title: pH_drift_assay_dataset_all_points
DOI: 10.5061/dryad.6tq74/5
title: README

description: A description of all data files in this submission. Please read first.
DOI: 10.5061/dryad.6tq74/6
title: Rhodophyta_family_n
DOI: 10.5061/dryad.6tq74/7
title: Rhodophyta_family_pH_13c_raw_data
DOI: 10.5061/dryad.6tq74/8
title: Rhodophyta_family_pH_phylogeny_input
DOI: 10.5061/dryad.731j7/1
title: Raw data survival, flower, senescence for each cohort

description: File Description	One Excel File with four sheets:1.  Survival and flower raw data for each cohort in each species: Initial number 1997, Number survive through 1998, Number flower in 1997 or 1998.2.  Proportion survive flower for each cohort in each species: Proportion of initial number that survive to 1998, Proportion flower in 1997 or 1998.3.  Senescence raw data for each individual in each species in 1997 (also Allium for 1998):(Julian calendar) date begin senescence, Date end senescence, Number of days of senescence, Date from cold room to greenhouse, Date outside, Leaf lifespan calculated as: LifespanSen2 = (Date begin senescence – date to greenhouse), LifespanEnd2 = (Date end senescence – date to greenhouse), LifespanSen1 = (Date begin senescence – date to outside),LifespanEnd1 = (Date end senescence – date to outside).4.  Senescence descriptive statistics for each cohort for each species: Mean, Standard Deviation, Standard Error, N for: Date begin senescence, Date end senescence, Number of days of senescence LifespanSen1, LifespanEnd1, LifespanSen2, LifespanEnd2.
DOI: 10.5061/dryad.7qj33/1
title: Bird migration numbers

description: The following variables are given in the columns: Species: bird species of concern, 3+3 abbreviation of scientific name Season: "Spring" or "Autumn" Year: year when data has been collected (5 years per species-season combination) DOY: day of year (1 to 365) X_sp: covariate describing the relative migration intensity of related species (NA = missing value) N: number of observed birds at Hanko bird observatory (NA = missing value)
DOI: 10.5061/dryad.9m2n7/1
title: Schwab et al Dataset

description: This contains the data for experiments 1-3 and both stress treatments from experiment 4 in separate tabs.
DOI: 10.5061/dryad.b2852/1
title: All data included in a zip file

description: The Zip file includes several different files that contain information on pair numbers, nest parameters, nest survival data and capture-recapture data for analysing juvenile and adult survival.
DOI: 10.5061/dryad.c68n1/1
title: Experimental data

description: Experimental data for Madrid and Vigo experiments
DOI: 10.5061/dryad.gk300/2
title: Schubring2016_fin

description: Source data
DOI: 10.5061/dryad.gs51v/3
title: 16S alignment file

description: Sequence alignment file that has been used to generate the initial master tree. Based on this master tree, the microbial life tree that was used in this study (16S OTU98.5) was generated using a distance-based clustering algorithm.
DOI: 10.5061/dryad.n0513/1
title: Main_Dataset

description: This file contains the phenotypic data for the joint univariate animal model analysis of breeding date.
DOI: 10.5061/dryad.n0513/2
title: Numeric_Pedigree

description: This file contains the numeric pedigree used to construct the inverted A (relationship) matrix for the joint univariate animal model analysis of breeding date.
DOI: 10.5061/dryad.n0513/3
title: Unique_ID_All_Cell_Sizes

description: This file contains the identity of each grid cell a given nest was located in for each version of the 'Grid' joint univariate animal model analysis of breeding date presented in the above paper.
DOI: 10.5061/dryad.n0513/4
title: Overlap_Buff_50m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 50m^2) used to construct the S matrix for the '50 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/5
title: Overlap_Buff_100m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 100m^2) used to construct the S matrix for the '100 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/6
title: Overlap_Buff_150m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 150m^2) used to construct the S matrix for the '150 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/7
title: Overlap_Buff_200m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 200m^2) used to construct the S matrix for the '200 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/8
title: Overlap_Buff_250m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 250m^2) used to construct the S matrix for the '250 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.n0513/9
title: Overlap_Buff_300m_All_Nests

description: This file contains a list of all overlapping nest buffers (buffer area = 300m^2) used to construct the S matrix for the '300 m overlap' animal model presented in the supporting information of the above paper
DOI: 10.5061/dryad.pv6jf/1
title: Data used for signal-to-noise calculations.

description: Mean pixel intensity and standard deviations of ROIs used for signal-to-noise calculations.
DOI: 10.5061/dryad.rm382/3
title: Frog resurvey: Adjacency file

description: Adjacency file needed to model the spatial random effects