cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11404258
title: Molecular insights into human phosphatidylserine synthase 1 reveal its inhibition promotes LDL uptake

description: Supporting molecular dynamics (MD) files for the manuscript with the same title. It includes three parts: MD initial files, trajectory files with the membrane and solvent water stripped, and an example binding free energy calculation setting file using Molecular Mechanics Poisson-Boltzmann Surface Area (MM-PBSA) method with an implicit membrane model.

The MD initial files include MD parameters (folder 0_mdin) and specific topology (.parm7), initial structure (.rst7), and structural restraint files (.rest) in the corresponding folder for each simulation.

The trajectory files include the topology files with membrane and solvent water stripped (.rst7) and 50-snapshot (4 ns interval) coordinate files (.nc) for each MD run.

The MM-PBSA setting file (.in) is supposed to be used as the input of the MMPBSA.py utility of the AMBER simulation suite.
DOI: 10.5281/zenodo.12795068
title: Impact of exposure to second-hand smoke during childhood on blood DNA methylation

description: Meta-analysis results for CpGs associated with household postnatal exposure to second hand smoke (SHS). Cohorts order are GenR, PIAMA, HELIX, BAMSE_Medall, BAMSE_EpiGene, and ALSPAC. Effect size represents the change in DNAm by number of household smokers (from 0 smokers to 2 smokers or more). Gene and CpG Island relative position are indicated (TSS200 is the region from Transcription start site (TSS) to − 200 nt upstream of TSS; TSS1500 covers − 200 to − 1500 nt upstream of TSS; S_Shore corresponds to the 2 kb regions immediately downstream of the CpG island; N_Shore corresponds to the 2 kb regions immediately upstream of the CpG island). Chr stands for Chromosome, SE stands for standard error, I2  stands for heterogeneity index, and FDR stands for False Discovery Rate. (DNA data obtained through Iluumina 450K array profiling)
DOI: 10.5281/zenodo.12795069
title: Impact of exposure to second-hand smoke during childhood on blood DNA methylation

description: Meta-analysis results for CpGs associated with household postnatal exposure to second hand smoke (SHS). Cohorts order are GenR, PIAMA, HELIX, BAMSE_Medall, BAMSE_EpiGene, and ALSPAC. Effect size represents the change in DNAm by number of household smokers (from 0 smokers to 2 smokers or more). Gene and CpG Island relative position are indicated (TSS200 is the region from Transcription start site (TSS) to − 200 nt upstream of TSS; TSS1500 covers − 200 to − 1500 nt upstream of TSS; S_Shore corresponds to the 2 kb regions immediately downstream of the CpG island; N_Shore corresponds to the 2 kb regions immediately upstream of the CpG island). Chr stands for Chromosome, SE stands for standard error, I2  stands for heterogeneity index, and FDR stands for False Discovery Rate. (DNA data obtained through Iluumina 450K array profiling)
DOI: 10.15468/dl.mwyn8h
title: Occurrence Download

description: A dataset containing 4318 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registro de Fauna Silvestre en el Inventario Nacional Forestal y de Fauna Silvestre-SERFOR, Perú"
 ]
}

 The dataset includes 4318 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106553-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvqs37
title: Occurrence Download

description: A dataset containing 9569 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poecile lugubris (Temminck, 1820)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 9569 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106554-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yryhp
title: Occurrence Download

description: A dataset containing 285 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Pilot Study of Wild Bees in Working Sugar Maple Stands"
 ]
}

 The dataset includes 285 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106556-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5fu6qb
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Psyllaephagus bliteus Riek, 1962"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106557-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26863783
title: Code appendix from Accuracy, rationality and specialisation in a generalised model of collective navigation

description: R code to reproduce the analyses in this paper
DOI: 10.6084/m9.figshare.26863783.v1
title: Code appendix from Accuracy, rationality and specialisation in a generalised model of collective navigation

description: R code to reproduce the analyses in this paper
DOI: 10.15468/dl.79qy6z
title: Occurrence Download

description: A dataset listing the 7 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melipona quadrifasciata Lepeletier, 1836"
 ]
}

 The dataset's 7 records were derived from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106546-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ps4wmn
title: Occurrence Download

description: A dataset containing 7883202 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "GadmGid is one of (PAN.6_1, PAN.5_1, PAN.12_1, PAN.8_1, COL.13_2, COL.2_2, COL.14_2, COL.29_2, COL.6_2, COL.26_2, COL.31_2, COL.11_2, COL.22_2, ECU.8_1, ECU.14_1, ECU.13_1, ECU.10_1, ECU.21_1, ECU.20_1, ECU.7_1, ECU.12_1, PER.25_1, PER.21_1)",
 "TaxonKey is one of (Aves, Reptilia, Amphibia, Mammalia)",
 {
 "not" : {
 "Issue" : [
 "is one of (Zero coordinate, Coordinate invalid, The scientific name differs on the record from that found in the checklist, The taxon ID was not found in the checklist)"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 7883202 records from 565 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106550-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc26x53f
title: CCDC 2052854: Experimental Crystal Structure Determination

description: Related Article: Meng Wang, Guang Zeng, Xu Zhang, Feng Ying Bai, Yong Heng Xing, Zhan Shi|2021|J.Mol.Struct.|1238|130422|doi:10.1016/j.molstruc.2021.130422
DOI: 10.5517/ccdc.csd.cc26x52d
title: CCDC 2052853: Experimental Crystal Structure Determination

description: Related Article: Meng Wang, Guang Zeng, Xu Zhang, Feng Ying Bai, Yong Heng Xing, Zhan Shi|2021|J.Mol.Struct.|1238|130422|doi:10.1016/j.molstruc.2021.130422
DOI: 10.5517/ccdc.csd.cc26x51c
title: CCDC 2052852: Experimental Crystal Structure Determination

description: Related Article: Meng Wang, Guang Zeng, Xu Zhang, Feng Ying Bai, Yong Heng Xing, Zhan Shi|2021|J.Mol.Struct.|1238|130422|doi:10.1016/j.molstruc.2021.130422
DOI: 10.5517/ccdc.csd.cc26x50b
title: CCDC 2052851: Experimental Crystal Structure Determination

description: Related Article: Meng Wang, Guang Zeng, Xu Zhang, Feng Ying Bai, Yong Heng Xing, Zhan Shi|2021|J.Mol.Struct.|1238|130422|doi:10.1016/j.molstruc.2021.130422
DOI: 10.5517/ccdc.csd.cc26p0qn
title: CCDC 2045991: Experimental Crystal Structure Determination

description: Related Article: Ranjit Bag, Suman Gomosta, Alaka Nanda Pradhan, Thierry Roisnel, Sundargopal Ghosh|2021|J.Indian Chem.Soc.|98|100040|doi:10.1016/j.jics.2021.100040
DOI: 10.5517/ccdc.csd.cc26x9k0
title: CCDC 2052992: Experimental Crystal Structure Determination

description: Related Article: Ranjit Bag, Suman Gomosta, Alaka Nanda Pradhan, Thierry Roisnel, Sundargopal Ghosh|2021|J.Indian Chem.Soc.|98|100040|doi:10.1016/j.jics.2021.100040
DOI: 10.5517/ccdc.csd.cc271rjl
title: CCDC 2057269: Experimental Crystal Structure Determination

description: Related Article: Aleksandra D. Mašulović, Jelena M. Lađarević, Lidija Radovanović, Željko Vitnik, Vesna Vitnik, Jelena Rogan, Dušan Ž. Mijin|2021|J.Mol.Struct.|1237|130419|doi:10.1016/j.molstruc.2021.130419
DOI: 10.5517/ccdc.csd.cc271rkm
title: CCDC 2057270: Experimental Crystal Structure Determination

description: Related Article: Aleksandra D. Mašulović, Jelena M. Lađarević, Lidija Radovanović, Željko Vitnik, Vesna Vitnik, Jelena Rogan, Dušan Ž. Mijin|2021|J.Mol.Struct.|1237|130419|doi:10.1016/j.molstruc.2021.130419
DOI: 10.7278/s50d-41sw-thma
title: Data for: Vibration of Natural Rock Arches and Towers Excited by Helicopter-Sourced Infrasound
DOI: 10.5281/zenodo.4710436
title: BurnCare Physiology Data: Burn without Intervention

description: A standard male patient with burns from 0-40% TBSA were simulated through 24 hours without intervention. Note, patients with 28% TBSA or greater burn did not survive the full simulation (hence the smaller data set). The newest version also includes a log and csv results file for each simulation. Additionally, state files for the golden path of resuscitation have been added with their corresponding csv result files. The 10xTBSA golden path starts the resuscitation pathway with fluids being given at a rate of 10xTBSA (then titrated up or down each hour based on urine output). The half dose initial rate golden path bases its starting rate of fluids on half the daily dose given over the first eight hours (then titrated up or down each hour based on urine output).
description: {"references": ["https://biogearsengine.com/"]}
DOI: 10.5281/zenodo.4559996
title: BurnCare Physiology Data: Burn without Intervention

description: A standard male patient with burns from 0-40% TBSA were simulated through 24 hours without intervention. Note, patients with 28% TBSA or greater burn did not survive the full simulation (hence the smaller data set). The newest version also includes a log and csv results file for each simulation. Additionally, state files for the golden path of resuscitation have been added with their corresponding csv result files. The 10xTBSA golden path starts the resuscitation pathway with fluids being given at a rate of 10xTBSA (then titrated up or down each hour based on urine output). The half dose initial rate golden path bases its starting rate of fluids on half the daily dose given over the first eight hours (then titrated up or down each hour based on urine output).
description: {"references": ["https://biogearsengine.com/"]}
DOI: 10.5281/zenodo.4711205
title: Benchmarking methylation-calling tools for Oxford Nanopore Sequencing

description: Benchmarking methylation-calling tools for Oxford Nanopore Sequencing
DOI: 10.5281/zenodo.4711436
title: MD trajectory for the C-terminal domain of Arc

description: GROMACS MD simulation trajectory of the C-terminal domain of Arc. Duration of simulation: 630 ns.
DOI: 10.17632/r5y668c92d.1
title: Arabic Letter Utterance

description: This dataset is audio recordings taken from the subject of 13 men and 13 women of Indonesian citizenship. Each subject was asked to read ten different Arabic letters four times. The dataset was taken in a different environment but using the same software, namely the Audio Recorder from Sony Mobile Communication. The setting specifications used are the same, mono channel and superior quality (44100Hz sample rate). We reduce noise using the Noise Reduction features of Audacity. The dataset is named in the format "XXYYY.wav." - XX is the ID of the read letter (please refer to Guide_Dataset.png) - YYY is the ID of the subject
DOI: 10.5281/zenodo.4711355
title: SAR Stack of Pichincha volcano in Ecuador, from Sentinel-1

description: A stack of Coregistered SLCs on Pichincha volcano, Ecuador Sensor: Sentinel-1 Ascending track 18 Time: 2019.01.01 - 2019.06.12, 23 acquisitions Processor: ISCE/topsStack Tropospheric delay estimated from ERA-5 using PyAPS is attached. This is an input dataset for the time series analysis with MiNoPy.
DOI: 10.5281/zenodo.4711469
title: Data of "Peat soil burning in the Mezzano Lowland (Po Plain, Italy): triggering mechanisms and environmental consequences"

description: This file includes data concerning the carbon content and isotope composition of peat-soils from the Mezzano Low Land (northeastern Italy) where soil smoldering is observed.
DOI: 10.5281/zenodo.4707609
title: Data of "Peat soil burning in the Mezzano Lowland (Po Plain, Italy): triggering mechanisms and environmental consequences"

description: This file includes data concerning the carbon content and isotope composition of peat-soils from the Mezzano Low Land (northeastern Italy) where soil smoldering is observed.
DOI: 10.17632/h2vmrdz4sg.2
title: Complementary material

description: Additional material of the article: Photophysical study and in vitro approach against Leishmania panamensis of dicloro-5,10,15,20-tetrakis(4-bromophenyl)porphyrinato Sn(IV)
DOI: 10.17632/rdrxvbdsc4.1
title: Depression-Covid

description: Cardiovascular and mental health sequelae as predictors of poor quality of life in the post-acute phase of COVID-19. "Victor Babes" University of Medicine and Pharmacy Timisoara, Romania;
DOI: 10.17632/t6z7np2dgf.1
title: JAAD-S-21-01514 Supplement Material

description: Supplement Material for publication JAAD-S-21-01514 (Response to McMahon et al.’s “Cutaneous Reactions Reported after Moderna and Pfizer COVID-19 Vaccination: A Registry-Based Study of 414 Cases.” )
DOI: 10.17632/vgcb8djsj7.2
title: Supplementary Material for the Data In Brief Article entitled "Coffee fermentation process in northern Colombia: Temporal shotgun metagenomics dataset"

description: This dataset presents the relative abundance of 695 bacterial and 156 fungal genera encompassed in 298 and 106 families, respectively, identified in the coffee fermentation process in the Sierra Nevada of Santa Marta (SNSM) in Colombia using Illumina-based amplicon sequencing.
DOI: 10.17632/9whp29xvpb.2
title: DWC distillation simulator

description: It is the distillation simulator in Fortran language we used to acquire the result of previous data
DOI: 10.17632/gkfg7j8sbs.1
title: Genotype-Phenotype Correlation in Trichilemmal Cysts

description: Full PLCD1 exome sequencing association analysis
DOI: 10.17632/rk7jfjfdhz.3
title: Transient perceptual enhancements resulting from selective shifts of exogenous attention in the central fovea

description: This repository contains data associated with the paper "Transient perceptual enhancements resulting from selective shifts of exogenous attention in the central fovea"
DOI: 10.17632/x4wwzxjm7b.1
title: Nature-based solutions_transformative change_PANORAMA
DOI: 10.25346/s6/bsidaa
title: Anna Urbanowicz-Krowacka and Fiber Art

description: Article from Woman's Art Journal, Vol. 8, No. 2 (Autumn, 1987 - Winter, 1988), pp. 39-44. Stable URL: http://www.jstor.org/stable/1358165 Accessed: 12-06-2018 18:33 UTC File accessible to UCLA Faculty/Staff/Students only. Please log on to download.
DOI: 10.25422/azu.data.14270354
title: USA National Phenology Network Observational Data Documentation

description: The goals of the USA National Phenology Network (USA-NPN) are to advance science, inform decisions, and communicate and connect with the public regarding phenology and species’ responses to environmental variation and climate change. The USA-NPN seeks to advance the science of phenology and facilitate ecosystem stewardship by providing phenological information freely and openly. To accomplish these goals, the USA-NPN National Coordinating Office (NCO) delivers observational data on plant and animal phenology in several formats, including minimally processed status and intensity datasets and derived phenometrics for individual plants, sites, and regions. This document describes the suite of observational data products delivered by the USA National Phenology Network, covering the period 2009–present for the United States and accessible via the Phenology Observation Portal and via an Application Programming Interface. The data described here have been used in diverse research and management applications, including over 30 publications in fields such as remote sensing, plant evolution, and resource management.<br><br><br><i>For all inquiries regarding this dataset, please contact the USA-NPN. This data is subject to the USA-NPN's Data Use Policy.</i>
DOI: 10.6084/m9.figshare.14410286
title: DATA, personality covid.xlsx

description: How personality traits of neuroticism and extraversion predict the effects of the COVID-19 on the mental health of Canadians
DOI: 10.6084/m9.figshare.14410286.v1
title: DATA, personality covid.xlsx

description: How personality traits of neuroticism and extraversion predict the effects of the COVID-19 on the mental health of Canadians
DOI: 10.6084/m9.figshare.3761562.v1847
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.14470893
title: personality, mental health during the pandemic

description: personality and mental health during the pandemic
DOI: 10.6084/m9.figshare.14470893.v1
title: personality, mental health during the pandemic

description: personality and mental health during the pandemic
DOI: 10.23641/asha.14417585
title: VTC distribution at three subglottal pressures (Liu et al., 2021)

description: <b>Purpose:</b> The excised canine larynx provides an advantageous experimental framework in the study of voice physiology. In recent years, signal processing methods have been applied to analyze phonations in excised canine larynx experiments. However, phonations have a highly complex and nonstationary nature corresponding to different proportions of regular and chaotic signal elements. Current nonlinear dynamic methods that are used to assess the degree of irregularity in the voice fail to recognize the distribution of voice type components (VTCs).<b>Method:</b> Based on measures of intrinsic dimension, this article presents a method to analyze the VTC distribution of phonations in excised canine larynx experiments. Thirty-nine phonation samples from 13 excised canine larynges at three different subglottal pressures were analyzed.<b>Results:</b> Phonation produced with subglottal pressures above phonation instability pressure (PIP) and below phonation threshold pressure (PTP) resulted in high proportions of Voice Types 3 and 4, characterized by chaotic and noisy signals. Phonation produced with pressure between PTP and PIP contained mostly Type 1 voice, characterized by a regular and nearly periodic signal. Mean proportions of all VTCs varied significantly in comparisons of phonations produced with Sub-PTP and PTP as well as in comparisons of phonations produced with PTP and PIP.<b>Conclusions:</b> Across all VTCs, the VTC profiles of normal and abnormal phonation differ significantly. Normal phonation is strongly associated with VTC<sub>1</sub> (Voice Type Component 1), whereas abnormal phonation exhibits increased VTC<sub>4</sub> (Voice Type Component 4). The study further demonstrates the ability of intrinsic dimension to successfully detect multiple voice types in an acoustic signal and highlights the need for expanded use of intrinsic dimension in human voice.<br><b>Supplemental Material S1.</b> Voice type component profile for phonation under phonation threshold pressure (PTP; see Figure 5). Voice type component profile for normal phonation (120% PTP). PTP = phonation threshold pressure (see Figure 6).Voice type component profile for phonation over PIP (150% PIP). PIP = phonation instability pressure (see Figure 7). <br>Liu, B., Raj, H., Klein, L., & Jiang, J. J. (2021). Evaluating the voice type component distributions of excised larynx phonations at three subglottal pressures. <i>Journal of Speech, Language, and Hearing Research.</i> Advance online publication. https://doi.org/10.1044/2021_JSLHR-20-00429
DOI: 10.23641/asha.14417585.v1
title: VTC distribution at three subglottal pressures (Liu et al., 2021)

description: <b>Purpose:</b> The excised canine larynx provides an advantageous experimental framework in the study of voice physiology. In recent years, signal processing methods have been applied to analyze phonations in excised canine larynx experiments. However, phonations have a highly complex and nonstationary nature corresponding to different proportions of regular and chaotic signal elements. Current nonlinear dynamic methods that are used to assess the degree of irregularity in the voice fail to recognize the distribution of voice type components (VTCs).<b>Method:</b> Based on measures of intrinsic dimension, this article presents a method to analyze the VTC distribution of phonations in excised canine larynx experiments. Thirty-nine phonation samples from 13 excised canine larynges at three different subglottal pressures were analyzed.<b>Results:</b> Phonation produced with subglottal pressures above phonation instability pressure (PIP) and below phonation threshold pressure (PTP) resulted in high proportions of Voice Types 3 and 4, characterized by chaotic and noisy signals. Phonation produced with pressure between PTP and PIP contained mostly Type 1 voice, characterized by a regular and nearly periodic signal. Mean proportions of all VTCs varied significantly in comparisons of phonations produced with Sub-PTP and PTP as well as in comparisons of phonations produced with PTP and PIP.<b>Conclusions:</b> Across all VTCs, the VTC profiles of normal and abnormal phonation differ significantly. Normal phonation is strongly associated with VTC<sub>1</sub> (Voice Type Component 1), whereas abnormal phonation exhibits increased VTC<sub>4</sub> (Voice Type Component 4). The study further demonstrates the ability of intrinsic dimension to successfully detect multiple voice types in an acoustic signal and highlights the need for expanded use of intrinsic dimension in human voice.<br><b>Supplemental Material S1.</b> Voice type component profile for phonation under phonation threshold pressure (PTP; see Figure 5). Voice type component profile for normal phonation (120% PTP). PTP = phonation threshold pressure (see Figure 6).Voice type component profile for phonation over PIP (150% PIP). PIP = phonation instability pressure (see Figure 7). <br>Liu, B., Raj, H., Klein, L., & Jiang, J. J. (2021). Evaluating the voice type component distributions of excised larynx phonations at three subglottal pressures. <i>Journal of Speech, Language, and Hearing Research.</i> Advance online publication. https://doi.org/10.1044/2021_JSLHR-20-00429
DOI: 10.5281/zenodo.4711484
title: IsoAnalyst: A System-Wide Stable Isotopic Labeling Aproach for Connecting Natural Products to Their Cognate Biosynthetic Gene Clusters

description: Processed mass spectrometry data input used to develop and validate the IsoAnalyst program and the output from these analyses. The S_erythraea folder contains all MS input and output data for <em>Saccharopolyspora erythraea</em>. The Micromonospora_RL09050HVFA folder contains MS input and output data for <em>Micromonopora sp.</em> RL09050HVFA, as well as the full antiSMASH output for the <em>Micromonopora sp.</em> RL09050HVFA genome.