cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5695837.v1
title: Accuracy of linear measurements performed with two imaging software in cone-beam computed tomography scans of dry human mandibles

description: ABSTRACT The present study aimed to assess the accuracy of linear measurements performed with two software packages in multislice (MSCT) and cone beam (CBCT) computed tomography (CT) images. The sample consisted of 10 human mandibles marked standardly 8 times with metallic orthodontic wires. The mandibles underwent both MSCT and CBCT scanning and were measured linearly and digitally with two software packages, namely Studio 3.1® (Anne Solutions®, SP, Brazil) (ST) and Implant Viewer 2.817® (Anne Solutions®, SP, Brazil) (IV). The linear measurements were the mandibular height (MH) and width (MW), and the distance from the alveolar ridge to the mandibular canal (AC). To validate the measurements, the mandibles were sectioned in the marked regions and measured with a digital caliper. Statistically significant differences were not observed between the measurements (MH, MW, and AC) taken digitally with the two software packages from images obtained from the two scanning modalities (MSCT and CBCT) and the measurements taken manually with a digital caliper (p&gt;0.05). MSCT and CBCT images measured digitally with ST and IV software packages resulted in reliable outcomes when compared to measurements obtained manually. Both software and imaging modalities are reliably useful for planning surgical procedure in the dental practice.
DOI: 10.6084/m9.figshare.28560269.v1
title: 通过子流程优化增强制造流程发现

description: 一些公开可用的制造过程事件日志。
DOI: 10.6084/m9.figshare.7908488.v1
title: Data for "Cortical patterning of abnormal morphometric similarity in psychosis is associated with brain expression of schizophrenia-related genes"

description: This dataset contains the data which accompanies the paper "Cortical patterning of abnormal morphometric similarity in psychosis is associated with brain expression of schizophrenia-related genes", Morgan et al, 2019.<br>The data for the Maastricht GROUP, Dublin and Cobre datasets is in 3 separate folders. Each folder contains:<br><br>1. 308 regional values of cortical thickness, grey matter volume, surface area, mean curvature, Gaussian curvature, mean diffusivity and fractional anisotropy, for each of the subjects (i.e. 7 tables with dimensions 308 cortical regions x N subjects)<br>2. A vector of the subjects' ages<br>3. A vector of the subjects' genders (1= male, 2=female)<br>4. A vector of the subjects' group membership (1=control, 2=patient)<br><br>A fourth folder contains miscellaneous required files, namely:<br><br>1. Anatomical names and x, y, z co-ordinates in MNI space for each of the 308 cortical regions<br>2. Yeo network and von Economo classes for the 308 cortical regions<br>Please note that the 308 cortical region parcellation was created by Dr Rafael Romero-Garcia- see Romero-Garcia et al, NeuroImage 2012 (https://doi.org/10.1016/j.neuroimage.2011.10.086). The Yeo network mapping was performed by Jakob Seidlitz as part of the paper Váša et al, Cereb Cortex. 2018 (https://doi.org/10.1093/cercor/bhx249). The von Economo class mapping was performed by Dr Konrad Wagstyl and Dr Kirstie Whitaker as part of the paper Whitaker and Vértes, PNAS 2016 (https://doi.org/10.1073/pnas.1601745113). Please cite those papers if you use the mappings in your own work.<br><br>Code to calculate morphometric similarity matrices and perform the analyses reported in the paper is available at: https://github.com/SarahMorgan/Morphometric_Similarity_SZ.<b></b><i></i><sub></sub><sup></sup><br>
DOI: 10.6084/m9.figshare.12575978.v1
title: Incident data base for event based surveillance

description: At the Robert Koch Institute, Berlin, Germany, the Information Centre for International Health Protection (https://www.rki.de/EN/Content/Institute/DepartmentsUnits/ZIG/INIG/INIG_node.html) is one among other units to perform event based surveillance. Their routine tasks include reading online articles from a defines set of sources, evaluating them for their relevance, and then filling their result into this table. This table only shows the mandatory tables of the year 2018. These columns were used in https://doi.org/10.1101/19006395.<br>
DOI: 10.6084/m9.figshare.20517429.v1
title: Supplementary Material for: Liver Abscess due to <b><i>Streptococcus intermedius</i></b> Bacteremia and Its Association with Colonic Carcinoma: Is Bacteremia with <b><i>Streptococcus intermedius</i></b> an Alert for Colonic Carcinoma?

description: Liver abscess caused by some kinds of <i>Streptococcus</i> group such as <i>Streptococcus bovis</i> group has been recognized to associate with colorectal cancer. <i>Streptococcus milleri</i> group with liver abscess has not been received much attention in this point of view. Here, we report the case of a 63-year-old man who developed liver abscess with <i>S. intermedius</i>, which belongs to the <i>S. milleri</i> group. We confirmed that this case was accompanied by cecal carcinoma by colonoscopy. The tumor was a pathological lead point of intussusception of cecum. On the 26th day, open right hemicolectomy was performed. In this case, bacterial endophthalmitis was a complication due to bacteremia. The patient underwent ophthalmic surgery on the 98th day. Research investigating 16S rRNA of the mucosal colon microbiome reported that the <i>S. intermedius</i> gene was upregulated in patients with colorectal carcinoma. It is recommended that liver abscess with <i>S. intermedius</i> bacteremia should alert the clinician about the risks of carcinoma of the colon and abscess formation in distant organs. We here list the case reports of liver abscess caused by <i>Streptococcus</i> other than <i>S. bovis</i> group, which was associated with colonic carcinoma, and suggest the need for further research about <i>S. milleri</i> group.
DOI: 10.6084/m9.figshare.25358770.v1
title: ASH1L guards <i>cis</i>-regulatory elements against cyclobutane pyrimidine dimer induction

description: ChIP-seq (H3K4me3, H3K27ac, H3K4me1, carboxyl-terminal domain of ASH1L) and HS-damage-seq (to capture CPDs) were performed on wildtype or ASH1L knockout U2OS cells that were either unirradiated or left to recover 0 h or 3 h after UV irradiation (20 J/m2). For bigBed files corresponding to ChIP-seq experiments, peaks were called in a majority of biological replicates. For bigWig tracks, signal tracks are the average signal across three biological replicates. Predicted U2OS enhancers were extracted from the EnhancerAtlas 2.0 database. All tracks are confined to a 10 Mbp region on chr2 (hg38). Files underly a UCSC Genome Browser session at http://genome.ucsc.edu/s/myancoskie/ASH1L_enhancer_MS and correspond to DOI: 10.1093/nar/gkae517.
DOI: 10.6084/m9.figshare.9783062.v1
title: glacier

description: Two sets of experiments considering with (control) and without (sensitivity) glacier respectively were designed in WRF3.9.1 model with a resolution of 3 km.
DOI: 10.6084/m9.figshare.14955192.v2
title: Data and R code for "Spatial heterogeneity generates ecological opportunity in an evolutionary radiation"

description: Three-spined sticklebacks collected from North Uist showing loch name (loch), latitude (lat), longitude (lon), distance to nearest marine environment in km (dist), loch elevation above sea level in m (alt), loch surface area in km<sup>2</sup> (area), pH (ph), turbidity (turb), presence of invertebrate predators (anis), presence of 9-spined sticklebacks (pp), presence of brown trout (pred), fish standard length in mm (sl), number of lateral plates on left flank of fish (plate).
DOI: 10.6084/m9.figshare.28806041.v2
title: Date.5.2 案例 2.zip

description: Cost control topology optimization MATLAB code and result data
DOI: 10.6084/m9.figshare.3120979.v2
title: T1DM echo database.xlsx

description: dataset used for the article "Tissue Doppler imaging is a sensitive echocardiographic technique to detect subclinical systolic and diastolic dysfunction of both ventricles in type 1 diabetes mellitus"
DOI: 10.6084/m9.figshare.24132585.v1
title: Materials to compare the clinical efficacy of RRH and LRH for cervical cancer.zip

description: This document includes the literature search records, the included literature (pdf), the extracted data tables, the original records of the data analysis, the characteristics of the included studies, and the assessment of the quality of the included studies.The demographic data for included studies included study design, sample size, mean age, mean BMl, FIGO stage, mean tumor size, and follow-up period. The following results were compared by: (1) perioperative results: operation time, blood loss, blood transfusion rate, complication rate, length of hospitalization; and (2) survival results: disease-free survival, recurrence, and mortality. Specific complications were also summarized.
DOI: 10.15482/usda.adc/1524754
title: Gridded 20-Year Parameterization of a Stochastic Weather Generator (CLIGEN) for South American and African Continents at 0.25 Arc Degree Resolution
DOI: 10.6084/m9.figshare.22098182.v1
title: Data for the paper "The role of ocean ventilation and terrestrial outflow in the atmospheric VOC over the Chinese marginal seas"

description: Data for the paper "The role of ocean ventilation and terrestrial outflow in the atmospheric VOC over the Chinese marginal seas"
DOI: 10.6084/m9.figshare.13011488.v1
title: Updated Dataset; Knowledge, Attitude, and Practices among Medical Students on Stigma and Discrimination towards People Living with HIV/AIDS in Uganda

description: Dataset for the study; <b>Knowledge, Attitude, and Practices among Medical Students on Stigma and Discrimination towards People Living with HIV/AIDS in Uganda</b>
DOI: 10.6084/m9.figshare.19087784.v2
title: Early Islamic Qibla Database 2022

description: This is an Excel spreadsheet with over 200 mosques and prayer places listed in chronological order along with GPS coordinates and links to further information. These places date from the very first mosques built in Medina onwards. I have tried to produce an exhaustive list for the first three centuries of Islam, then followed by a few important later mosques. I published the first edition of this list in January 2021. <br> This is the second edition. (January 2022) I am grateful for the contributions made by Peter Harremoes for his research both in books and manuscripts, and also measuring Qibla direction on the ground in 2021. <br> There is an active up-to-date list that is published on my website: https://nabataea.net/ Follow the menu Founding of Islam /Qibla Tool. This tool provides a graphical overview of the data and is useful of analysis.<br> Dan Gibson, January 2022
DOI: 10.21942/uva.12369287.v2
title: I.LOCK_S.GIANI_SAMPLE_S1_Review of reviews_Sample selection

description: This file contains the rationale for sample selection for the qualitative analysis of the reviews in management and organization studies.
DOI: 10.6084/m9.figshare.12701795.v1
title: Supplemental Table 2 - Participant Demographics

description: This table shows the demographics of the participants that took the survey.
DOI: 10.6084/m9.figshare.21112231.v5
title: Data sets for "Fragility in glassy liquids: A structural approach based on machine learning"

description: All data are in ASCII format.
DOI: 10.6084/m9.figshare.23531121.v1
title: MIDOG++ database as JSON format

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.28840508.v1
title: Sequence alignments, table and phylogenetic tree for Septoria reinamora, Fungal Planet description sheets June 2025

description: Sequence alignments, table and phylogenetic tree for Septoria reinamora
DOI: 10.6084/m9.figshare.11375826.v1
title: GNNWR Code and Simulated Data.zip

description: GNNWR Code and Simulated Data
DOI: 10.6084/m9.figshare.7376477.v4
title: Dataset: Clinical Trials

description: The Clinical Trials dataset includes information about Clinical Trials mentioned in Springer Nature publications.<br>See also: https://scigraph.springernature.com/explorer/datasets/data_at_a_glance/<br>NOTE: this dataset was made available by Dimensions.ai.<br>A clinical trial record usually includes information about dates, sponsor organizations, subjects, external identifiers and abstract when available.<br>Version info:* http://scigraph.downloads.uberresearch.com/archives/current/TIMESTAMP.txt* http://scigraph.downloads.uberresearch.com/archives/current/LICENSE.txt<br>
DOI: 10.6084/m9.figshare.14977545.v1
title: Drosophilidae (Diptera) of the Cook Islands—dataset

description: In 2017 a survey was conducted of the Drosophilidae on the remote Cook Islands: Rarotonga, Aitutaki and Mangaia in the Tropical South Pacific. A diverse range of collecting methods was implemented, at different elevations and in domestic, rural, and montane-forest habitats. Only two widespread species <i>Drosophila ananassae</i> and <i>D. simulans</i> have previously been reported from Cook Islands. Among the 8036 specimens collected, 12 species were found, one of which—<i>Drosophila rarotongae</i>—is treated as a new species (McEvey & Polak, 2021); it is endemic to Rarotonga and found only in montane forest. <i>Drosophila suzukii </i>was absent. An unusual form of <i>Drosophila funebris</i> was collected (one female). <i>Drosophila pallidifrons</i> was found among <i>D. sulfurigaster </i>in very low frequency (1%). This dataset lists all the collection localities (Table S1), all the dates and methods used at each of those localities: the events (Table S2), and a complete list of all specimens recorded at each of those events: the records (Table S3). All specimens are held in the Australian Museum, Sydney.
DOI: 10.6084/m9.figshare.25943941.v1
title: 20240601_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.28831148.v1
title: Dataset

description: Data submitted for the manuscript "Aerobic methane oxidation controls oceanic emissions of methane released from global cold seeps".
DOI: 10.6084/m9.figshare.20472270.v1
title: BGL

description: Raw data - BGL
DOI: 10.6084/m9.figshare.15090600.v1
title: Supplementary Material for: Gender-Related Differences in Hypertrophic Cardiomyopathy: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Gender-related differences in phenotypic expression and outcomes have been established in many cardiac conditions; however, the impact of gender in hypertrophic cardiomyopathy (HCM) remains unclear. We conducted a systematic review and meta-analysis to assess the differences in clinical outcomes between female and male HCM patients. <b><i>Methods:</i></b> We searched MEDLINE and EMBASE from inception to October 2020. Included were cohort studies that compared outcomes of interest including all-cause mortality, HCM-related mortality, and worsening heart failure (HF) or HF hospitalization between male and female. Data from each study were combined using the random effects model to calculate pooled odds ratio (OR) with 95% confidence interval (CI). <b><i>Results:</i></b> Eleven retrospective cohort studies with a total of 9,427 patients (3,719 females) were included. Female gender was significantly associated with an increased risk of all-cause mortality (pooled OR = 1.63, 95% CI: 1.26–2.10, <i>p</i> ≤ 0.001), HCM-related mortality (pooled OR = 1.47, 95% CI: 1.08–2.01, <i>p</i> = 0.015), and worsening HF or HF hospitalization (pooled OR = 2.05, 95% CI: 1.76–2.39, <i>p</i> ≤ 0.001). <b><i>Conclusions:</i></b> Female gender was associated with a worse prognosis in HCM. These findings suggest the need for improved care in women including early identification of disease and more possible aggressive management. Moreover, gender-based strategy may benefit in HCM patients.
DOI: 10.6084/m9.figshare.24173508.v1
title: Google Scholar - RIS

description: Google scholar
DOI: 10.6084/m9.figshare.26954722.v3
title: The basic information for S.aureus and k-mers output results files from several GWAS analyses

description: The basic information for S.aureus and k-mers output results files from several GWAS analyses
DOI: 10.6084/m9.figshare.21350637.v1
title: Kevin Chen 2022 Honours isolate dataset

description: Details of isolates used for 2022 Honours project
DOI: 10.6084/m9.figshare.24616446.v1
title: 500 m, 8-day historical MODIS FVC dataset from 1982–2000 in China

description: a 500 m, 8-day historical MODIS FVC dataset from 1982–2000 in China
DOI: 10.6084/m9.figshare.25309201.v1
title: Spatial structure-data1.xlsx

description: 我们使用Winkelmass软件计算了空间结构参数：Uniform angle(W)、Diameter dominance(U)、Species mingling(M)，进而计算forest spatial structure index(FSSI)
DOI: 10.6084/m9.figshare.16641331.v2
title: Supplementary 1 Entity extraction result

description: Entity extraction result
DOI: 10.6084/m9.figshare.22693468.v2
title: Performance_041022.csv

description: Data set from the performance done on 04/10/22.
DOI: 10.6084/m9.figshare.3517484.v1
title: Appendix B. Six figures, including a map of study sites, data distributions, temporal, and annual results.

description: Six figures, including a map of study sites, data distributions, temporal, and annual results.
DOI: 10.6084/m9.figshare.24541093.v2
title: P2P_Chp4

description: power demand
DOI: 10.6084/m9.figshare.6275813.v1
title: Supplementary Material for: Type 2 Diabetes Promotes Cell Centrosome Amplification via AKT-ROS-Dependent Signalling of ROCK1 and 14-3-3σ

description: <b><i>Background/Aims:</i></b> Type 2 diabetes is associated with oxidative stress and DNA damage which can cause centrosome amplification. Thus, the study investigated centrosome amplification in type 2 diabetes and the underlying mechanisms. <b><i>Methods:</i></b> Centrosome numbers in human peripheral blood mononuclear blood cells (PBMC) from healthy subjects and patients with type 2 diabetes were compared to access the association between type 2 diabetes and centrosome amplification. Colon cancer cells were used to investigate the molecular mechanisms underlying the centrosome amplification triggered by high glucose, insulin and palmitic acid. Western blot analysis was used to quantify the level of protein and protein phosphorylation. Immunofluorescent staining was performed to detect centrosomes. ROS was quantified using flow cytometry technique. Transcriptpmic profiling was performed using Illumina HiSeq<sup>TM</sup>500 platform. <b><i>Results:</i></b> We found that centrosome amplification was increased PBMC from the type 2 diabetic patients, which correlated with the levels of fasting blood glucose and HbA1c. High glucose, insulin and palmitic acid, alone or in combinations, induced ROS production and centrosome amplification. Together, they increased AKT activation as well as the expression, binding and centrosome translation of ROCK1 and 14-3-3σ. Results from further analyses showed that AKT-ROS-dependent upregulations of expression, binding and centrosome translocation of ROCK1 and 14-3-3σ was the molecular pathway underlying the centrosome amplification <i>in vitro</i> triggered by high glucose, insulin and palmitic acid. Moreover, the key <i>in vitro</i> molecular signalling events activated by high glucose, insulin and palmitic acid were verified in PBMC from the patients with type 2 diabetes. <b><i>Conclusion:</i></b> Our results show that type 2 diabetes promotes cell centrosome amplification, and suggest that the diabetic pathophysiological factors-activated AKT-ROS-dependent signalling of ROCK1 and 14-3-3σ is the underlying molecular mechanism.
DOI: 10.6084/m9.figshare.13553819.v1
title: Merged

description: Merged and processed data of scRNA-seq from all 4 AE patients.
DOI: 10.6084/m9.figshare.25039781.v1
title: Gu_Bactrocera dorslis_microbiota promoting larval growth

description: The sequence file contains 16S and genomic sequences from the gut microbiota of <i>Bactrocera dorsalis</i>,<i> </i>supporting Figures 1,2 and 4. All the other raw data are deposited in the Excel data sheet. The GraphPad document contains all the data supporting Figures S1, 3, and 5 and all the related conclusions in the manuscripts.
DOI: 10.6084/m9.figshare.22233337.v1
title: Supplementary Material for: International variability of renal and cardiovascular outcomes and mortality in patients with type 2 diabetes mellitus in Europe

description: Introduction Type 2 diabetes and its complications represent a huge burden to public health. With this prospective, observational cohort study, we aimed to estimate and to compare the incidence rate (IR) of renal and cardiovascular outcomes and all-cause mortality in patients with type 2 diabetes in different European countries. Methods The renal endpoint was a composite of a sustained decline in estimated GFR of at least 40 %, a sustained increase in albuminuria of at least 30 % including a transition in albuminuria class, progression to kidney failure with replacement therapy, or death from renal causes. The cardiovascular endpoint was a composite of death from cardiovascular causes, nonfatal myocardial infarction, or nonfatal stroke. Results 3131 participants from four European countries (Austria, Hungary, The Netherlands, and Scotland) with a median follow-up time of 4.4 years were included. IRs were adjusted for several risk factors including sex, age, estimated GFR, albuminuria, HbA1c, blood pressure and duration of type 2 diabetes. Across countries, the adjusted IR for the renal endpoint was significantly higher in Hungary and Austria, the adjusted IR for the cardiovascular endpoint was significantly higher in Scotland and Austria. All-cause mortality was significantly higher in Scotland compared to all other countries. Conclusion Our findings show how the longitudinal outcome of patients with type 2 diabetes varies significantly across European countries even after accounting for the distribution of underlying risk factors.
DOI: 10.15468/dl.j9gkbr
title: Occurrence Download

description: A dataset containing 1766 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Agrotis puta (Hübner, 1803)"
 ]
}

 The dataset includes 1766 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009668-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.