cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16755198
title: Code and Data for Policy Tree Optimization

description: This repository contains all the code corresponding to methods and figure generation in the paper below:

Adaptation triggers and indicator interpretability for dynamic reoptimization of reservoir control policies under climate change



Requirements


NumPy, Pandas, Matplotlib, Scipy, Scikit-learn, Seaborn, Numba, multiprocessing, ptreeopt,pickle



Directories


Data: Contains input data for analysis used in the study.

Main_optimization: This folder contains function codes called by Step1_outerloop_reopt_perf.py and supporting function files. This includes the framework for an “outer loop” adaptation policy that establishes indicator thresholds for reoptimization based on recently observed data, and an “inner loop” control policy that undergoes reoptimization according to these thresholds. The inner loop control policies are generated by using the function Step0_Innerloop_Reopt.py. To replicate the results from the experiment, the order is Step0_Innerloop_Reopt.py and then Step1_outerloop_reopt_perf.py. Step 0 takes a significant amount of time to run in serial processing for different windows of observed data.

This directory also contains main_reopt_perf_reevaluate.py, which is used to reevaluate the policies for the training and testing sets, determining the policy actions triggered over time based on feature variables that describe changes in hydrology and demand.

Figures: Directory containing Python scripts to generate Figures 3-8 of the manuscript and data used to plot the figures.

PostProcessing: Directory containing Python scripts on SHAP analysis and sensitivity analysis.



Data preparation and model run




The scenario data can be downloaded here. Unzip and move the folders into data/cmip5 and data/lulc.



The CMIP5 climate scenarios are from USBR and contain daily reservoir inflows in cfs.

The LULC scenarios are from multiple models and have been converted to water demand multipliers as described in Cohen et al. 2021






License: MIT
DOI: 10.15468/dl.jsewcq
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Achalinus rufescens",
 "Year 1970-2025"
 ]
}

 The dataset includes 39 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022035-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/dfy-20v-ffx
title: †Chariocrinus Hess, 1972

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p4k-fkt-see
title: Pristiophorus schroederi Springer & Bullis, 1960

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zcy-a9f-88l
title: Tellina Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6v8-5z8-ht0
title: †Palorbitolina lenticularis (Blumenbach, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8z4-vq8-v0l
title: Cetacea Brisson, 1762

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mdb-a62-emy
title: Globigerina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ym9-aha-sxf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ad3-lat-5t3
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ze5-m6m-z5z
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6wd-d5l-jy8
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wdf-cyc-bk1
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ygg-qpd-hz5
title: †Palorbitolina lenticularis (Blumenbach, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fg2-en9-cm3
title: Cerauroides

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rrn-ycx-mkk
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pgr-rak-vjy
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ezn-nnv-c29
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kvn-kdj-lvg
title: Graptolithina Bronn, 1849

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qmb-59q-e9c
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tgb-y0f-zzd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e6f-wzf-pr6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6yn-43k-t69
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hc7-8j1-zjl
title: Phoca Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7d2-bl2-04h
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cy7-4rp-5ry
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2sv-vby-zvp
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j6k-tst-q4h
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s1c-3fw-0hs
title: Odontaspis

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z0w-cjc-ape
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/99b-tnz-svv
title: Dactylioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yxc-rwz-gr6
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ljr-r1t-xde
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rgv-adf-tgx
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5dr-bb6-00p
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5h1-cvp-1y0
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5we-7fb-pvc
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ehg-e0a-cz8
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lbc-vfx-pnp
title: Cervidae Goldfuss, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.13133/uniroma1/ehiv8g/tuwpwc
title: al-Fajr_1-18_1990_ForTheAccomplishmentOfOurNationalHistoricalDuties_OCR.pdf

description: :unav
DOI: 10.25549/inscriptifact-ouc110602278
title: Persepolis Fortification Aramaic Text 452, PFAT 452

description: [Text Description:] Administrative text with seals PFATS 0426 ❧ [Text or Publication Number Note:] PFAT 452, Bowman 452 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0426 on obverse, upper edge, reverse, bottom edge, flat edge. ❧ [Physical Object Note:] Damage on round edge.
DOI: 10.25549/jarda-c75-1959
title: "Carrying luggage and babies, long line of repatriates wends way over catwalk, last stage of trip from China where some have been in exile. Others had never seen homeland."--caption on photograph

description: This collection of photographs from the Hearst Collection of the Los Angeles Examiner in the USC Regional History Collection, documents the incarceration of Japanese Americans in California during World War II. These 222 photographs provide a glimpse into the lives of Japanese immigrants and native born Japanese Americans (a.k.a. Nisei) residing in California from 1921 to 1958, with primary emphasis on 1941-1946. Much of the coverage documents scenes of:1) the mass removal and incarceration process;2) life in camps at Manzanar, Santa Anita, Tanforan, and Tule Lake;3) post-war repatriation to Japan.The original captions from the photographs, many of which were published in the Los Angeles Examiner, have been transcribed into the Japanese American Incarceration Images, 1941-1946 to enhance subject-specific retrieval; the cultural references reflect the 1940's terminology.USC's Japanese American Incarceration Images, 1941-1946, originally known as Japanese American Relocation Digital Archive, 1941-1946 (JARDA), was funded by a grant from the Library Services and Technology Act to the California Digital Library, administered by the California State Library, as part of an initiative to assemble a statewide Japanese American Relocation Digital Archive, available at: https://cdlib.org/cdlinfo/2004/04/22/japanese-american-relocation-digital-archives-jarda-web-site-updated/. Japanese American Relocation Digital Archive includes access to more than 25 different collections from four (eventually nine) institutions. It features newly digitized photographs, documents, manuscripts, paintings, drawings, letters, oral histories, and inventories of archival collections. It will eventually bring together over 10,000 digital images and 20,000 pages of electronic transcriptions of documents and oral histories, showing daily life in the camps.Please note that this collection was originally known as the Japanese American Relocation Digital Archive, 1941-1946 (JARDA), before being changed to the Japanese American Incarceration Images, 1941-1946.
DOI: 10.25549/inscriptifact-ouc110604607
title: Persepolis Fortification Aramaic Text 524, PFAT 524

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAT 524 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions bottom edge? ❧ [Physical Object Note:] Two pieces, broken flat edge, reverse.
DOI: 10.5281/zenodo.17353212
title: Savani_et_al_2025
DOI: 10.5281/zenodo.17353213
title: Savani_et_al_2025
DOI: 10.11582/2024.00036
title: Time series Aknes landslide, Norway

description: The data sets contain time series of the deformation and hydrological properties of the Åknes landslide, Norway. A README.txt file lists the data and their time span.
DOI: 10.25549/inscriptifact-ouc110602268
title: Persepolis Fortification Aramaic Text 453, PFAT 453

description: [Text Description:] Administrative text with seals PFATS 0079, PFATS 0019s ❧ [Text or Publication Number Note:] PFAT 453, Bowman 453 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions PFATS 0079 reverse; PFATS 0019s flat edge. ❧ [Physical Object Note:] Damage on round edge.
DOI: 10.25549/inscriptifact-ouc110604593
title: Persepolis Fortification Aramaic Text 524, PFAT 524

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAT 524 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions bottom edge? ❧ [Physical Object Note:] Two pieces, broken flat edge, reverse.
DOI: 10.25549/jarda-c75-1900
title: "Barracks for Repatriates" -- caption on photograph

description: "Barracks for Repatriates -- Wash hangs on a line between unheated wooden barracks, home for Japanese repatriates from the United States until they find a new home or relatives in Japan. More than 2,000 Japanese men, women and children were brought from the United States to Japan on Christmas Day aboard the former luxury liner Matsonia." -- caption on photograph
DOI: 10.25549/inscriptifact-ouc110602250
title: Persepolis Fortification Aramaic Text 452, PFAT 452

description: [Text Description:] Administrative text with seals PFATS 0426 ❧ [Text or Publication Number Note:] PFAT 452, Bowman 452 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0426 on obverse, upper edge, reverse, bottom edge, flat edge. ❧ [Physical Object Note:] Damage on round edge.
DOI: 10.25549/jarda-c75-1960
title: "Carrying luggage and babies, long line of repatriates wends way over catwalk, last stage of trip from China where some have been in exile. Others had never seen homeland."--caption on photograph

description: This collection of photographs from the Hearst Collection of the Los Angeles Examiner in the USC Regional History Collection, documents the incarceration of Japanese Americans in California during World War II. These 222 photographs provide a glimpse into the lives of Japanese immigrants and native born Japanese Americans (a.k.a. Nisei) residing in California from 1921 to 1958, with primary emphasis on 1941-1946. Much of the coverage documents scenes of:1) the mass removal and incarceration process;2) life in camps at Manzanar, Santa Anita, Tanforan, and Tule Lake;3) post-war repatriation to Japan.The original captions from the photographs, many of which were published in the Los Angeles Examiner, have been transcribed into the Japanese American Incarceration Images, 1941-1946 to enhance subject-specific retrieval; the cultural references reflect the 1940's terminology.USC's Japanese American Incarceration Images, 1941-1946, originally known as Japanese American Relocation Digital Archive, 1941-1946 (JARDA), was funded by a grant from the Library Services and Technology Act to the California Digital Library, administered by the California State Library, as part of an initiative to assemble a statewide Japanese American Relocation Digital Archive, available at: https://cdlib.org/cdlinfo/2004/04/22/japanese-american-relocation-digital-archives-jarda-web-site-updated/. Japanese American Relocation Digital Archive includes access to more than 25 different collections from four (eventually nine) institutions. It features newly digitized photographs, documents, manuscripts, paintings, drawings, letters, oral histories, and inventories of archival collections. It will eventually bring together over 10,000 digital images and 20,000 pages of electronic transcriptions of documents and oral histories, showing daily life in the camps.Please note that this collection was originally known as the Japanese American Relocation Digital Archive, 1941-1946 (JARDA), before being changed to the Japanese American Incarceration Images, 1941-1946.
DOI: 10.11582/2024.00040
title: Downward flux of chlorophyll a, phaeophytin, particulate organic carbon (POC), particulate organic nitrogen (PON), and the atomic ratio of POC:PON at 7 stations in East Greenlandic fjords (72.1-76.7 N, 19.6-24.6 W) in August 2022, project ECOTIP

description: As part of the project ECOTIP, a field campaign was conducted along the East Greenlandic coast in August 2022 with the R/V Maria S. Merian. A short-term sediment trap array (KC Denmark type) was deployed for 21.5-23.5 hours at 7 stations: 1) station MSM110_10-2 on 13 August 2022 (Arden Caple Fjord), 2) station MSM110_11-4 on 14 August 2022 (Arden Caple Fjord), 3) station MSM110_12-5 on 15 August 2022 (Arden Caple Fjord), 4) station MSM110_14-4 on 17 August 2022 (Dove Bay), 5) station MSM110_16-4 on 21 August 2022 (King Oscar Fjord), 6) station MSM110_17-3 on 22 August 2022 (King Oscar Fjord), and 7) station 18-2 on 23 August 2022 (King Oscar Fjord). The following parameters were determined: 1) the downward flux of total (&gt; 0.7 micrometre) chlorophyll a (Chl a) (mg Chl a m^-2 d^-1), 2) the downward flux of Chl a &gt; 10 micrometre (mg Chl a &gt; 10 micrometre m^-2 d^-1), 3) the downward flux of total (&gt; 0.7 micrometre) phaeophytin (mg Phaeo m^-2 d^-1), 4) the downward flux of Phaeo &gt; 10 micrometre (mg Phaeo &gt; 10 micrometre m^-2 d^-1), 5) the downward flux of particulate (&gt;0.7 micrometre) organic carbon (POC) (mg POC m^-2 d^-1), 6) the downward flux of particulate (&gt;0.7 micrometre) organic nitrogen (PON) (mg PON m^-2 d^-1), and 7) the atomic ratio of PON:PON of the sinking matter. The data are presented here in one file per sampling station. The file title and the ID refers to the sampling station (and the activity at this station) and date of the sediment trap deployment (YYYYMMDD). References to additional data from the same field campaign and the detailed analytical methods can be found in each netCDF and in the Read_me file.
DOI: 10.25549/inscriptifact-ouc110604587
title: Persepolis Fortification Aramaic Text 524, PFAT 524

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAT 524 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions bottom edge? ❧ [Physical Object Note:] Two pieces, broken flat edge, reverse.
DOI: 10.5281/zenodo.17582172
title: Example Trajectory Data and Jupyter Notebooks Showing How to Compute Various Properties with STACIE

description: This archive contains
(i) Jupyter notebooks with examples of how to use STACIE.
(ii) The output files needed to execute the example notebooks.
Detailed descriptions and input files with which trajectories can be reproduced
are provided in STACIE's Git repository: https://github.com/molmod/stacie/.
Instructions for running the examples can be found in the README.pdf file included in this archive.

All files in this dataset are distributed under a choice of license:
either the Creative Commons Attribution-ShareAlike 4.0 International license (CC BY-SA 4.0)
or the GNU Lesser General Public License, version 3 or later (LGPL-v3+).
The SPDX License Expression for the documentation is CC-BY-SA-4.0 OR LGPL-3.0-or-later.

You should have received a copy of the CC BY-SA 4.0 and LGPL-v3+ licenses along with the data set.
If not, see:



https://creativecommons.org/licenses/by-sa/4.0/

https://www.gnu.org/licenses/
DOI: 10.25549/inscriptifact-ouc110602229
title: Persepolis Fortification Aramaic Text 451, PFAT 451

description: [Text Description:] Administrative text with seals PFATS 0425s, PFATS 0079 ❧ [Text or Publication Number Note:] PFAT 451, Bowman 451 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions PFATS 0425s upper edge, bottom edge, flat edge; PFATS 0079 reverse.
DOI: 10.5281/zenodo.15543902
title: Example Trajectory Data and Jupyter Notebooks Showing How to Compute Various Properties with STACIE

description: This archive contains
(i) Jupyter notebooks with examples of how to use STACIE.
(ii) The output files needed to execute the example notebooks.
Detailed descriptions and input files with which trajectories can be reproduced
are provided in STACIE's Git repository: https://github.com/molmod/stacie/.
Instructions for running the examples can be found in the README.pdf file included in this archive.

All files in this dataset are distributed under a choice of license:
either the Creative Commons Attribution-ShareAlike 4.0 International license (CC BY-SA 4.0)
or the GNU Lesser General Public License, version 3 or later (LGPL-v3+).
The SPDX License Expression for the documentation is CC-BY-SA-4.0 OR LGPL-3.0-or-later.

You should have received a copy of the CC BY-SA 4.0 and LGPL-v3+ licenses along with the data set.
If not, see:



https://creativecommons.org/licenses/by-sa/4.0/

https://www.gnu.org/licenses/
DOI: 10.25549/inscriptifact-ouc110604576
title: Persepolis Fortification Aramaic Text 523, PFAT 523

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAT 523 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions on obverse, bottom edge, flat edge. ❧ [Physical Object Note:] Damage on reverse, upper edge, round edge.