cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/g9m2gphz33.3
title: Data for: Dissolved organic matter dynamics in the epipelagic North Pacific low-latitude western boundary current system: insights from optical analyses

description: The following data from the 20 biogeochemical sampling stations are presented in a table: Cruise information, Station ID, Samping date, Sampling time, Latitude, Longitude, Bottom depth, Depth, Potential temperature, Salinity, Chlorophyll a, apparent oxygen utilization (AOU), Soluble reactive phosphate (SRP), nitrate plus nitrite (N+N), aCDOM(254), aCDOM(280), aCDOM(325), aCDOM(350), aCDOM(443), S275-295, peak C, peak M, peak T, M:C, HIX, DOC, and SUVA254.
DOI: 10.17632/jfv7t66tbt.1
title: JBC/2019/010380 Kori et al

description: This is the primary data used in our publication by Kori et al., 2020
DOI: 10.18716/nmrshiftdb2/75698
title: NMR data for fluorocyclohexane
DOI: 10.5281/zenodo.3701450
title: 16S metabarcoding, a powerful tool to compare environmental and culture-derived bacterial communities, assess media selectivity and detect rare environmental bacterial species

description: Processed raw data reads
DOI: 10.5281/zenodo.3701451
title: 16S metabarcoding, a powerful tool to compare environmental and culture-derived bacterial communities, assess media selectivity and detect rare environmental bacterial species

description: Processed raw data reads
DOI: 10.17632/23t5tvv438.1
title: Multi-omic analysis of host-microbe interactions

description: Raw data derived from: 1. Microbial and host RNAseq analysis (raw counts) 2. Metagenome analysis using Humann2 (raw output data)
DOI: 10.17632/23t5tvv438.2
title: Data for: A multi-omics approach identifies host-microbe alterations associated with infection severity in diabetic foot infections.

description: Raw data derived from: 1. Microbial and host RNAseq analysis (raw counts) 2. Metagenome analysis using Humann2 (raw output data)
DOI: 10.17632/h7xv2cgph7.2
title: Efficacy of hydrogel patches in preventing facial skin damage caused by mask compression in fighting against coronavirus disease-2019: a short-term, self-controlled trial——Supplemental Material

description: Supplemental Material 1（Representative photographs）：Some representative photos in our study. The patricipants agreed to be published. Supplemental Material 2（ Questionnaire）：A Questionnaire on the efficacy of the new hydrogel patches in preventing mask-induced facial skin damage. Supplemental Material 3（Supplemental Table）： Overall score for each participant.
DOI: 10.17632/hbv7pg45mz.6
title: ASEAN Total Primary Energy Supply (in KTOE)

description: Total Primary Energy supply from ASEAN member countries (mostly from 1990-2015, the information in some countries is incomplete). This database is gathered from several databases. Thus, there might be a data discrepancy with the actual national condition for some countries. For more complete data and information, please refer to the link provided on the references.
DOI: 10.18716/nmrshiftdb2/75749
title: NMR data for methyl 6-(cyclohexylcarbamoyl)pyridine-3-carboxylate
DOI: 10.17632/4jp5k9c8f2.1
title: Effects of Vehicle Purchase Tax Incentives on Innovation Performance of New Energy Vehicle Enterprises in China

description: Effects of Vehicle Purchase Tax Incentives on Innovation Performance of New Energy Vehicle Enterprises in China
DOI: 10.17632/wn2jt2cpkc.1
title: Socioeconomic dataset describing the model of local development

description: This dataset presents the raw data that build socioeconomic indicators of local development. Processing of this data allows for constructing a model of development of the selected municipalities in Poland. The model is further used in the statistical analysis to verify the hypothesis of the positive impact of the geothermal spas on the local development in the Polish municipalities.
DOI: 10.17632/wn2jt2cpkc.2
title: Socioeconomic dataset describing the model of local development

description: This dataset presents the raw data that build socioeconomic indicators of local development. Processing of this data allows for constructing a model of development of the selected municipalities in Poland. The model is further used in the statistical analysis to verify the hypothesis of the positive impact of the geothermal spas on the local development in the Polish municipalities.
DOI: 10.18716/nmrshiftdb2/75711
title: NMR data for InChI=1S/C13H13NO4/c1-3-10-8-18-13(16)14(10)11-6-4-9(5-7-11)12(15)17-2/h3-7,10H,1,8H2,2H3
DOI: 10.17632/2twtspv9wv.1
title: Costa et al. Use of a food neophobia test to characterize personality traits of dairy calves. Data sets and SAS code

description: This repository contains the full data for all tests, PCA results and SAS code for analysis.
DOI: 10.17632/5mggmx45ny.1
title: Short Bus: Syndemics, support, SSDI

description: This paper adds to the conversation of syndemics by illustrating the exacerbation of chronic physiological and psychological illnesses, poverty, and stigma surrounding. No matter which illness involved, syndemic effects are nearly inevitable when addressing trust in human service programs.
DOI: 10.17632/ty9jt3hcvm.1
title: HER2 expression DataBase

description: In this prospective study, 26 patients undergoing radical gastrectomy with type 1 or 2 lymphadenectomies were evaluated at two referral centers in Manaus-AM (Hospital Universitário Getúlio Vargas - HUGV and Fundação Centro de Controle de Oncologia do Estado do Amazonas - FCECON), from April / 2016 to June / 2017. All patients signed the Informed Consent Form and completed the project's own form, through an interview, which includes general personal information, symptomatology, possible dietary factors related to gastric neoplasia, endoscopic and tomographic findings, and surgical procedure performed.
DOI: 10.18716/nmrshiftdb2/75716
title: NMR data for 1H-indole-5-carboxylic acid
DOI: 10.5519/qd.pcpyliee
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (403 records)
DOI: 10.17632/gsd5hxdphy.4
title: Influence of glial biotin availability on coping up with ER stress

description: We hypothesize that biotin favors BCAA utilization and its deficiency accumulates BCAA to prolong autophagy inhibition and ER stress by chronic activation of mTORC1. Ganesan, D, Ramaian Santhaseela, A, Rajasekaran, S, Selvam, S, Jayavelu, T. Astroglial biotin deprivation under endoplasmic reticulum stress uncouples BCAA‐mTORC1 role in lipid synthesis to prolong autophagy inhibition in the aging brain. J. Neurochem. 2020; 00: 1– 14. https://doi.org/10.1111/jnc.14979
DOI: 10.18716/nmrshiftdb2/75761
title: NMR data for InChI=1S/C9H19NO2/c1-3-11-8(2)12-7-9-5-4-6-10-9/h8-10H,3-7H2,1-2H3
DOI: 10.18716/nmrshiftdb2/75763
title: NMR data for 2-cyclohexyl-N,N-dimethylethanamine
DOI: 10.18716/nmrshiftdb2/75710
title: NMR data for InChI=1S/C15H20N2O3/c1-3-20-15(19)12-7-9-13(10-8-12)16-17-11(2)5-4-6-14(17)18/h7-11,16H,3-6H2,1-2H3
DOI: 10.18716/nmrshiftdb2/75754
title: NMR data for (1-methylpyrrol-2-yl) benzoate
DOI: 10.5281/zenodo.3701083
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.17632/r6p4hzjd5z.1
title: Data for: What are the Determinants of International Tourism in Tanzania?

description: Economic growth and data on tourism, Tanzania.
DOI: 10.18716/nmrshiftdb2/75712
title: NMR data for ethyl 4-[(5-chloropyridin-2-yl)amino]benzoate
DOI: 10.18716/nmrshiftdb2/75713
title: NMR data for methyl 4-(dimethylamino)benzoate
DOI: 10.18716/nmrshiftdb2/75750
title: NMR data for InChI=1S/C15H21IN2O2/c1-3-18-8-4-5-12(18)10-17-15(19)13-9-11(16)6-7-14(13)20-2/h6-7,9,12H,3-5,8,10H2,1-2H3,(H,17,19)
DOI: 10.5281/zenodo.3701082
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.3701470
title: Beyond the Code: Mining Self-Admitted Technical Debt in Issue Tracker Systems

description: Self-admitted technical debt (SATD) is a particular case of Technical Debt (TD) where developers explicitly acknowledge their sub-optimal implementation decisions. Previous studies mine SATD by searching for specific TD-related terms in source code comments.By contrast, in this paper we argue that developers can admit technical debt by other means, e.g., by creating issues in tracking systems and labelling them as referring to TD. We refer to this type of SATD as issue-based SATD or just SATD-I. We study a sample of 286 SATD-I instances collected from five open source projects, including Microsoft Visual Studio and GitLab Community Edition. We show that only 29% of the studied SATD-I instances can be tracked to source code comments. We also show that SATD-I issues take more time to be closed, compared to other issues, although they are not more complex in terms of code churn. Besides, in 45% of the studied issues TD was introduced to ship earlier, and in almost 60%it refers to Design flaws. Finally, we report that most developers pay SATD-I to reduce its costs or interests (66%). Our findings suggest that there is space for designing novel tools to support technical debt management, particularly tools that encourage developers to create and label issues containing TD concerns.
DOI: 10.5281/zenodo.3701471
title: Beyond the Code: Mining Self-Admitted Technical Debt in Issue Tracker Systems

description: Self-admitted technical debt (SATD) is a particular case of Technical Debt (TD) where developers explicitly acknowledge their sub-optimal implementation decisions. Previous studies mine SATD by searching for specific TD-related terms in source code comments.By contrast, in this paper we argue that developers can admit technical debt by other means, e.g., by creating issues in tracking systems and labelling them as referring to TD. We refer to this type of SATD as issue-based SATD or just SATD-I. We study a sample of 286 SATD-I instances collected from five open source projects, including Microsoft Visual Studio and GitLab Community Edition. We show that only 29% of the studied SATD-I instances can be tracked to source code comments. We also show that SATD-I issues take more time to be closed, compared to other issues, although they are not more complex in terms of code churn. Besides, in 45% of the studied issues TD was introduced to ship earlier, and in almost 60%it refers to Design flaws. Finally, we report that most developers pay SATD-I to reduce its costs or interests (66%). Our findings suggest that there is space for designing novel tools to support technical debt management, particularly tools that encourage developers to create and label issues containing TD concerns.
DOI: 10.17632/cb2jh7nyhp.1
title: Data for: What are the Determinants of International Tourism in Tanzania?

description: Statistical data on tourism and economic development in Tanzania.
DOI: 10.17632/h7xv2cgph7.1
title: Efficacy of hydrogel patches in preventing facial skin damage caused by mask compression in fighting against coronavirus disease-2019: a short-term, self-controlled trial——Supplemental Material

description: Supplemental Material 1（Representative photographs）：Some representative photos in our study. The patricipants agreed to be published. Supplemental Material 2（ Questionnaire）：A Questionnaire on the efficacy of the new hydrogel patches in preventing mask-induced facial skin damage.
DOI: 10.17632/kytr45wyvc.3
title: Cryptosporidium hominis infections in non-human animal species: Revisiting the concept of host specificity

description: Supplementary Table S1. Taxonomic classification, including common and scientific names, of all non-human animal species in which Cryptosporidium hominis DNA has been detected.
DOI: 10.17632/w48h4pgzkm.1
title: Modeling urban growth for Quito, Ecuador

description: Dataset used for two simulations. 1) calibration 2000 - 2016 and evaluation, 2018, and 2) prediction for the period between 2016 and 2040. The Data structure corresponds to the LUCIA model requirements. Results simulations are included.
DOI: 10.17632/w7886p2c6m.1
title: Data for: C.M. Calo, et al. 'A study of plant remains from a fluvial shellmound (Monte Castelo, RO, Brazil) using X-Ray MicroCT imaging technique' Journal of Archaeological Science: Reports 26 (2019) 101902

description: Stack of 2D reconstructed X-Ray Microtomography images of the plant remain sample SMC_02 from Monte Castelo archaeological site (RO), Brazil. X-Ray MicroCT System: v|tome|x m (LG) Museum of Zoology, University of São Paulo (MZ-USP) Source voltage (keV): 60.0 Source current (µA): 180.0 Exposure time/projection (s): 1.0 Number of projections (n): 1000 Total scan angles (n): 360 Filters: none Pixel size (µm): 2.84 Source to sample distance (FOD) (mm): 11.548 Source to detector distance (FDD) (mm): 814.075 Reconstruction software: x|datos; slightly enhanced using FIJI-ImageJ Technical support Alberto B. Carvalho Image credits: Calo, C. M. and Rizzutto M. A.
DOI: 10.17632/zd6srgnsmx.1
title: Effects of Vehicle Purchase Tax Incentives on Innovation Performance of New Energy Vehicle Enterprises in China

description: Effects of Vehicle Purchase Tax Incentives on Innovation Performance of New Energy Vehicle Enterprises in China
DOI: 10.18716/nmrshiftdb2/75718
title: NMR data for ethyl 4-(dimethylamino)benzoate
DOI: 10.18716/nmrshiftdb2/75748
title: NMR data for InChI=1S/C15H22N2O3/c1-3-17-9-5-6-11(17)10-16-15(19)14-12(18)7-4-8-13(14)20-2/h4,7-8,11,18H,3,5-6,9-10H2,1-2H3,(H,16,19)
DOI: 10.17632/hxpvf9gjz9.1
title: Mechanical Properties of Steels

description: Training Dataset for constructing ML models
DOI: 10.17632/k392rcs98d.2
title: The neuronal receptor tyrosine kinase Alk is a target for longevity

description: Raw data to accompany the paper "The neuronal receptor tyrosine kinase Alk is a target for longevity," Aging Cell (2020). https://doi.org/10.1111/acel.13137
DOI: 10.18716/nmrshiftdb2/75717
title: NMR data for 4-pyrrol-1-ylbenzoic acid
DOI: 10.5281/zenodo.3701241
title: Dataset related to the article "Cyclophilin A in Arrhythmogenic Cardiomyopathy Cardiac Remodeling"

description: This record contains raw data related to the article "Cyclophilin A in Arrhythmogenic Cardiomyopathy Cardiac Remodeling" Abstract: Arrhythmogenic cardiomyopathy (ACM) is a genetic disorder characterized by the progressive substitution of functional myocardium with noncontractile fibro-fatty tissue contributing to ventricular arrhythmias and sudden cardiac death. Cyclophilin A (CyPA) is a ubiquitous protein involved in several pathological mechanisms, which also characterize ACM (i.e., fibrosis, inflammation, and adipogenesis). Nevertheless, the involvement of CyPA in ACM cardiac remodeling has not been investigated yet. Thus, we first evaluated CyPA expression levels in the right ventricle (RV) tissue specimens obtained from ACM patients and healthy controls (HC) by immunohistochemistry. Then, we took advantage of ACM- and HC-derived cardiac mesenchymal stromal cells (C-MSC) to assess CyPA modulation during adipogenic differentiation. Interestingly, CyPA was more expressed in the RV sections obtained from ACM vs. HC subjects and positively correlated with the adipose replacement extent. Moreover, CyPA was upregulated at early stages of C-MSC adipogenic differentiation and was secreted at higher level over time in ACM- derived C-MSC. Our study provides novel ex vivo and in vitro information on CyPA expression in ACM remodeling paving the way for future C-MSC-based mechanistic and therapeutic investigations.
description: This study was supported by Ministero della Salute (RC 2016-2017 to Centro Cardiologico Monzino—IRCCS).
DOI: 10.5281/zenodo.3701363
title: Friend or foe? The apparent benefits of gregarine (Apicomplexa: Sporozoa) infection in the European earwig

description: Data set supporting the publication "Friend or foe? The apparent benefits of gregarine (Apicomplexa: Sporozoa) infection in the European earwig" in the International Journal for Parasitology
DOI: 10.5281/zenodo.3701364
title: Friend or foe? The apparent benefits of gregarine (Apicomplexa: Sporozoa) infection in the European earwig

description: Data set supporting the publication "Friend or foe? The apparent benefits of gregarine (Apicomplexa: Sporozoa) infection in the European earwig" in the International Journal for Parasitology
DOI: 10.18716/nmrshiftdb2/75721
title: NMR data for 2-bromo-2-(bromomethyl)-1,1,3,3-tetramethylindene
DOI: 10.18716/nmrshiftdb2/75764
title: NMR data for N,N-dimethylpyrrolidine-1-carboselenoamide
DOI: 10.21227/gqc5-1007
title: Simulation of a jet flow

description: Simulation of a jet flow
DOI: 10.21227/qjxp-kc31
title: Simulation of a jet flow

description: Simulation of a jet flow
DOI: 10.5281/zenodo.3701240
title: Dataset related to the article "Cyclophilin A in Arrhythmogenic Cardiomyopathy Cardiac Remodeling"

description: This record contains raw data related to the article "Cyclophilin A in Arrhythmogenic Cardiomyopathy Cardiac Remodeling" Abstract: Arrhythmogenic cardiomyopathy (ACM) is a genetic disorder characterized by the progressive substitution of functional myocardium with noncontractile fibro-fatty tissue contributing to ventricular arrhythmias and sudden cardiac death. Cyclophilin A (CyPA) is a ubiquitous protein involved in several pathological mechanisms, which also characterize ACM (i.e., fibrosis, inflammation, and adipogenesis). Nevertheless, the involvement of CyPA in ACM cardiac remodeling has not been investigated yet. Thus, we first evaluated CyPA expression levels in the right ventricle (RV) tissue specimens obtained from ACM patients and healthy controls (HC) by immunohistochemistry. Then, we took advantage of ACM- and HC-derived cardiac mesenchymal stromal cells (C-MSC) to assess CyPA modulation during adipogenic differentiation. Interestingly, CyPA was more expressed in the RV sections obtained from ACM vs. HC subjects and positively correlated with the adipose replacement extent. Moreover, CyPA was upregulated at early stages of C-MSC adipogenic differentiation and was secreted at higher level over time in ACM- derived C-MSC. Our study provides novel ex vivo and in vitro information on CyPA expression in ACM remodeling paving the way for future C-MSC-based mechanistic and therapeutic investigations.
description: This study was supported by Ministero della Salute (RC 2016-2017 to Centro Cardiologico Monzino—IRCCS).
DOI: 10.5281/zenodo.3701319
title: Mapping file used for input validation in Quest for Orthologs

description: <pre>Mapping file used in the validation step and the map_relation.py step of the uploaded file format in QfO 2018 bechmarking workflow (https://github.com/qfo/benchmark-webservice/tree/elixir).</pre>
DOI: 10.5281/zenodo.3701449
title: Pre-built SV genomes

description: Data stored here contains the pre-built SV-simulated genomes to be used for neural network model customization for the SV caller NanoVar. Please refer to this tutorial: https://github.com/cytham/nanovar/wiki/Model-training The SV genomes here were simulated according to Stage A in the tutorial, please use this data to proceed from Stage B onwards.
DOI: 10.17632/95mr7pr8rj.7
title: Two Daily Weather Datasets: Chiang Mai International Airport and Theodore Francis Green State Airport

description: Two daily weather datasets for experimenting data-driven models on two different weather types: 1. Chiang Mai International Airport, Chiang Mai, Thailand from January 1st 1998 to July 31st 2019. The data were acquired from the station via personal communication. The following files are provided: - chiang_mai_1998-2019_raw.csv : the raw data. - chiang_mai_1998-2019.csv : the preprocessed data: the dates and redundant variables were removed, the missing data were imputed with MICE algorithm and all units were changed to SI units. 2. Theodore Francis Green State Airport, Providence, RI from January 1st 2006 to October 31st 2019. The data were acquired from the National Oceanic and Atmospheric Administration (https://www.ncdc.noaa.gov/cdo-web/datatools/lcd). The following files are provided: - providence_2006-2019_raw.csv : the raw data. - providence_2006-2019.csv : the preprocessed data: the dates were removed, the missing data were imputed with MICE algorithm and all units were changed to SI units. Additionally, we provide code in Python and shell scripts for reproducibility of the three autoencoder models in "Short-term Daily Precipitation Forecasting with Seasonally-Integrated Autoencoder". The code have the following requirements: - Python 3.6 or higher - Keras 2.2 or higher (Python library) - Tensorflow 1.x.y or where x.y is 12.0 or higher (Python library) The proposed model can be trained by simply running the following command: ./Providence.sh After the training is done, the RMSE and CORR scores will be reported, and the forecast values will be saved in `path/to/data_XXXXXX-xxxxxx.csv`. The README.md file provides additional information on code usage. #### Changing arguments You can modify the arguments in the script files. For example, `--model` and `horizon` let you specify the model and the forecast horizon, respectively. The descriptions of all available options can be accessed via the command: python3 main.py -h #### Running the script in different modes We have prepared the scripts for `prediction` mode and `evaluation` mode, namely `Providence_predict.sh` and `Providence_eval.sh`, as well as the pretrained weights for all three models in the `model` folder. To use these two modes, you need to specify the location of the pretrained weights using `--load` option. For example, the weights of SSAE that makes forecast over the next three days on Providence dataset are stored in `pvd_ssae_3.h5` --load model/pvd_ssae_3.h5 You also need to specify the test data. --test_data Data/data_name.csv REFERENCES: - Liu, L., Jiang, H., He, P., Chen, W., Liu, X., Gao, J., Han, J., 2019. On the variance of the adaptive learning rate and beyond. arXiv preprint arXiv:1908.03265. - Zaytar, M.A., Amrani, C.E., 2016. Sequence to sequence weather forecasting with long short-term memory recurrent neural networks. International Journal of Computer Applications 143, 7–11. doi:10.5120/ijca2016910497.
DOI: 10.17632/jhpj54ycmt.5
title: Mendeley Supplemental Document 1

description: Supplemental material for the article entitled “Autologous Cell-Based Therapy for Male and Female Pattern Hair Loss using Dermal Sheath Cup Cells: A Randomized Placebo-Controlled Double-Blinded Dose Finding Clinical Study” by Ryoji TSUBOI,* Shiro NIIYAMA, Ryokichi IRISAWA, Kazutoshi HARADA, Yosuke NAKAZAWA, and Jiro KISHIMOTO. Accepted for the publication on the Journal of the American Academy of Dermatology as an Original Article. *Corresponding author: Supplement 1: Online only for the Materials & Methods section; Supplement 2: Classification photo for FPHL
DOI: 10.18716/nmrshiftdb2/75727
title: NMR data for InChI=1S/C10H6N2O2/c11-5-7-9(13)6-3-1-2-4-8(6)12-10(7)14/h1-4H,(H2,12,13,14)
DOI: 10.18716/nmrshiftdb2/76076
title: NMR data for 2-methylsulfanyl-4-phenylthiophene
DOI: 10.5281/zenodo.3701318
title: Mapping file used for input validation in Quest for Orthologs

description: <pre>Mapping file used in the validation step and the map_relation.py step of the uploaded file format in QfO 2018 bechmarking workflow (https://github.com/qfo/benchmark-webservice/tree/elixir).</pre>
DOI: 10.5281/zenodo.3701448
title: Pre-built SV genomes

description: Data stored here contains the pre-built SV-simulated genomes to be used for neural network model customization for the SV caller NanoVar. Please refer to this tutorial: https://github.com/cytham/nanovar/wiki/Model-training The SV genomes here were simulated according to Stage A in the tutorial, please use this data to proceed from Stage B onwards.