cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8287109
title: Additional file 18: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: Spearman Correlations for NLSVR CTR2 models from 10 to 1000 genes presented in figure for section E and Fig.Â 6. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8287115.v1
title: Additional file 19: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: MAD values for NLSVR CTR2 models discussed in section E. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.8287109.v1
title: Additional file 18: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: Spearman Correlations for NLSVR CTR2 models from 10 to 1000 genes presented in figure for section E and Fig.Â 6. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8287103
title: Additional file 17: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: MAD values for PCR CTR1 models discussed in section E. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.8287097
title: Additional file 16: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: Spearman Correlations for PCR CTR1 models from 10 to 1000 genes presented in figure for section E and Fig.Â 6. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.8287103.v1
title: Additional file 17: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: MAD values for PCR CTR1 models discussed in section E. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.8287097.v1
title: Additional file 16: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: Spearman Correlations for PCR CTR1 models from 10 to 1000 genes presented in figure for section E and Fig.Â 6. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.8287088
title: Additional file 15: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: MAD values for NLSVR CTR1 models discussed in section E. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.8287088.v1
title: Additional file 15: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: MAD values for NLSVR CTR1 models discussed in section E. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.8287082
title: Additional file 14: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: Spearman Correlations for NLSVR CTR1 models from 10 to 1000 genes presented in figure for section E and Fig.Â 6. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.8287073
title: Additional file 13: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: MAD values for PCR DEG models discussed in section E. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8287067
title: Additional file 12: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: Spearman Correlations for PCR DEG models from 10 to 1000 genes presented in figure for section E and Fig.Â 6. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.8287073.v1
title: Additional file 13: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: MAD values for PCR DEG models discussed in section E. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8287052
title: Additional file 10: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: Spearman Correlations for NLSVR DEG models from 10 to 1000 genes presented in figure for section E and Fig.Â 6. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.8287061
title: Additional file 11: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: MAD values for DEG NLSVR models discussed in section E. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.8287052.v1
title: Additional file 10: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: Spearman Correlations for NLSVR DEG models from 10 to 1000 genes presented in figure for section E and Fig.Â 6. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.8287061.v1
title: Additional file 11: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: MAD values for DEG NLSVR models discussed in section E. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.8287043
title: Additional file 3: of Novel subpopulations in date palm (Phoenix dactylifera) identified by population-wide organellar genome sequencing

description: Date Palm Genotypes. File containing all genotypes utilized in this analysis in vcf format. (VCF 3902 kb)
DOI: 10.6084/m9.figshare.8287037
title: Additional file 2: of Novel subpopulations in date palm (Phoenix dactylifera) identified by population-wide organellar genome sequencing

description: Mitochondrial and Chloroplast Haplotype SNP Positions. Table containing genotypes for all intra-date palm SNP positions in the Mitochondrial and Chloroplast haplotypes identified in this study. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8287043.v1
title: Additional file 3: of Novel subpopulations in date palm (Phoenix dactylifera) identified by population-wide organellar genome sequencing

description: Date Palm Genotypes. File containing all genotypes utilized in this analysis in vcf format. (VCF 3902 kb)
DOI: 10.6084/m9.figshare.8287031
title: Additional file 1: of Novel subpopulations in date palm (Phoenix dactylifera) identified by population-wide organellar genome sequencing

description: Cultivar Information. Table containing information on date palm cultivars analyzed in this study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8287037.v1
title: Additional file 2: of Novel subpopulations in date palm (Phoenix dactylifera) identified by population-wide organellar genome sequencing

description: Mitochondrial and Chloroplast Haplotype SNP Positions. Table containing genotypes for all intra-date palm SNP positions in the Mitochondrial and Chloroplast haplotypes identified in this study. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8287028
title: Additional file 9: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S4. Related to Fig. 3 and Additional file 3: Figure S3 and S4. PRM results of Kic1-HB, Orm2-HB and Vps53-HB. Peak intensities of transition product peaks used for quantification are listed. Peptides used for normalization are indicated in bold. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.8287031.v1
title: Additional file 1: of Novel subpopulations in date palm (Phoenix dactylifera) identified by population-wide organellar genome sequencing

description: Cultivar Information. Table containing information on date palm cultivars analyzed in this study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8287022
title: Additional file 8: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S3. Related to Fig. 3 and Additional file 2: Figure S2. List of quantified phosphorylation sites over MS experiments, containing details on which sites were quantified in which search engine (PD, MQ) and the ratios in the different conditions. (XLSX 212 kb)
DOI: 10.6084/m9.figshare.8287028.v1
title: Additional file 9: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S4. Related to Fig. 3 and Additional file 3: Figure S3 and S4. PRM results of Kic1-HB, Orm2-HB and Vps53-HB. Peak intensities of transition product peaks used for quantification are listed. Peptides used for normalization are indicated in bold. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.8287022.v1
title: Additional file 8: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S3. Related to Fig. 3 and Additional file 2: Figure S2. List of quantified phosphorylation sites over MS experiments, containing details on which sites were quantified in which search engine (PD, MQ) and the ratios in the different conditions. (XLSX 212 kb)
DOI: 10.6084/m9.figshare.8287013
title: Additional file 7: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S2. Related to Fig. 2. Summary of Gene Ontologies identified for MQ- and PD-output on Hog1-targets. The table is provided in a separate Excel file (Additional file 7: Table S2). List summarizing gene ontology (GO) results for Hog1-dependent phosphorylation sites based on GO Slim mapping. The file is composed of three sheets, for (a) the MQ-derived, (b) the PD-derived and (c) the combined (union of PD- and MQ-derived sites) sites and their enrichment in certain gene ontologies. Each table contains information on the GO-ID, its name and category, proteins identified for a given GO-term, the fold-enrichment and the p-value as well as the adjusted p-value. Finally, the tables also contain the GO level, giving the hierarchy level of the given ontology. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.8287013.v1
title: Additional file 7: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S2. Related to Fig. 2. Summary of Gene Ontologies identified for MQ- and PD-output on Hog1-targets. The table is provided in a separate Excel file (Additional file 7: Table S2). List summarizing gene ontology (GO) results for Hog1-dependent phosphorylation sites based on GO Slim mapping. The file is composed of three sheets, for (a) the MQ-derived, (b) the PD-derived and (c) the combined (union of PD- and MQ-derived sites) sites and their enrichment in certain gene ontologies. Each table contains information on the GO-ID, its name and category, proteins identified for a given GO-term, the fold-enrichment and the p-value as well as the adjusted p-value. Finally, the tables also contain the GO level, giving the hierarchy level of the given ontology. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.8287001
title: Additional file 6: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S1. Related to Fig. 1. Summary of quantified phosphorylation sites over MS experiments with MQ and PD search engines. This table is provided in a separate Excel file (Additional file 1: Table S1). List of quantified phosphorylation sites over MS experiments (4 experimental conditions in total), containing details on which sites were quantified in which search engine (PD, MQ), the ratios in the 4 different conditions, field assignment (similar to [4]), the corresponding protein and whether an S/T-P motif has been found to be phosphorylated. The column “assignment_figure2” provides the underlying data for Fig. 2a, hence whether the corresponding phosphorylation site has been commonly quantified in PD and MQ, quantified in MQ only or quantified in PD only. The additional columns provide data on the quantified phosphorylation sites that have been published in [22] (salt stress at time points 0, 55″, 60″, regulatory clusters), [5] (salt stress at 5′) and [62] (salt stress upon Cdc28 inhibition) and integrated with the PD and MQ datasets. (XLSX 1765 kb)
DOI: 10.6084/m9.figshare.8287001.v1
title: Additional file 6: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S1. Related to Fig. 1. Summary of quantified phosphorylation sites over MS experiments with MQ and PD search engines. This table is provided in a separate Excel file (Additional file 1: Table S1). List of quantified phosphorylation sites over MS experiments (4 experimental conditions in total), containing details on which sites were quantified in which search engine (PD, MQ), the ratios in the 4 different conditions, field assignment (similar to [4]), the corresponding protein and whether an S/T-P motif has been found to be phosphorylated. The column “assignment_figure2” provides the underlying data for Fig. 2a, hence whether the corresponding phosphorylation site has been commonly quantified in PD and MQ, quantified in MQ only or quantified in PD only. The additional columns provide data on the quantified phosphorylation sites that have been published in [22] (salt stress at time points 0, 55″, 60″, regulatory clusters), [5] (salt stress at 5′) and [62] (salt stress upon Cdc28 inhibition) and integrated with the PD and MQ datasets. (XLSX 1765 kb)
DOI: 10.6084/m9.figshare.8286974
title: Additional file 9: of Characterization of a bacteriophage with broad host range against strains of Pseudomonas aeruginosa isolated from domestic animals

description: Frequency of spontaneous BIMs. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8286968
title: Additional file 8: of Characterization of a bacteriophage with broad host range against strains of Pseudomonas aeruginosa isolated from domestic animals

description: Absorbance data collected in the experiments. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8286974.v1
title: Additional file 9: of Characterization of a bacteriophage with broad host range against strains of Pseudomonas aeruginosa isolated from domestic animals

description: Frequency of spontaneous BIMs. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8286968.v1
title: Additional file 8: of Characterization of a bacteriophage with broad host range against strains of Pseudomonas aeruginosa isolated from domestic animals

description: Absorbance data collected in the experiments. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8286959
title: Additional file 7: of Characterization of a bacteriophage with broad host range against strains of Pseudomonas aeruginosa isolated from domestic animals

description: Estimation of EOP. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8286959.v1
title: Additional file 7: of Characterization of a bacteriophage with broad host range against strains of Pseudomonas aeruginosa isolated from domestic animals

description: Estimation of EOP. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8286953
title: Additional file 13: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S8. Key resource table. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8286950
title: Additional file 6: of Characterization of a bacteriophage with broad host range against strains of Pseudomonas aeruginosa isolated from domestic animals

description: Titers of phage before and after refrigeration for 104 days. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8286950.v1
title: Additional file 6: of Characterization of a bacteriophage with broad host range against strains of Pseudomonas aeruginosa isolated from domestic animals

description: Titers of phage before and after refrigeration for 104 days. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8286953.v1
title: Additional file 13: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S8. Key resource table. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8286941
title: Additional file 12: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S7. Related to Figs.Â 1 and 2. This table is showing the strains and plasmids used in this study. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.8286935
title: Additional file 11: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S6. Related to Fig. 2. Comprehensive list of phosphorylation sites of Hog1-substrates identified in our study, as well as previous studies. For each phosphorylation site, the study providing the evidence for Hog1-dependency and Cdc28-dependency is indicated. We also included information on the type of evidence (MS-based, M-track, in vitro kinase assay). (A) Hog1-target proteins with at least one specific phosphorylation site confidently identified as a direct Hog1-substrate (MS- or other evidence). (B) Candidate proteins that show interaction with Hog1, but do not contain distinct sites that have been identified as Hog1-dependent. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8286941.v1
title: Additional file 12: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S7. Related to Figs.Â 1 and 2. This table is showing the strains and plasmids used in this study. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.8286935.v1
title: Additional file 11: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

description: Table S6. Related to Fig. 2. Comprehensive list of phosphorylation sites of Hog1-substrates identified in our study, as well as previous studies. For each phosphorylation site, the study providing the evidence for Hog1-dependency and Cdc28-dependency is indicated. We also included information on the type of evidence (MS-based, M-track, in vitro kinase assay). (A) Hog1-target proteins with at least one specific phosphorylation site confidently identified as a direct Hog1-substrate (MS- or other evidence). (B) Candidate proteins that show interaction with Hog1, but do not contain distinct sites that have been identified as Hog1-dependent. (XLSX 20 kb)
DOI: 10.15468/dl.tdrya4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
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 "and" : [
 "HasGeospatialIssue is false",
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 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079446-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13363628
title: Vocational Education Teachers' Confidence, Experience, and Perception About Integrating Technology

description: Data berupa transkrip hasil interview 3 guru SMK di Jawa Barat dan Jawa Tengah
DOI: 10.5281/zenodo.13363629
title: Vocational Education Teachers' Confidence, Experience, and Perception About Integrating Technology

description: Data berupa transkrip hasil interview 3 guru SMK di Jawa Barat dan Jawa Tengah
DOI: 10.15468/dl.kvwwkc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
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 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079448-240626123714530/datasets/export for details.
DOI: 10.15468/dl.mj5bcu
title: Occurrence Download

description: A dataset containing 28664 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cercotrichas galactotes (Temminck, 1820)",
 "HasCoordinate is true",
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}

 The dataset includes 28664 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079447-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8tg8kz
title: Occurrence Download

description: A dataset containing 3358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chamaeleo chamaeleon (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
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}

 The dataset includes 3358 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079449-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pywf72
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
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 "SpeciesKey is Cylindroiulus anglilectus Read, 2007",
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 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079450-240626123714530/datasets/export for details.
DOI: 10.15468/dl.j3sdk2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
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 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079452-240626123714530/datasets/export for details.
DOI: 10.15468/dl.k2nuq8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
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 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079453-240626123714530/datasets/export for details.
DOI: 10.15468/dl.sskmqa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
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 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079455-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26768173
title: PLSDB_plasmids_analyzed.csv

description: PLSDB_plasmids_analyzed
DOI: 10.6084/m9.figshare.26768173.v1
title: PLSDB_plasmids_analyzed.csv

description: PLSDB_plasmids_analyzed