cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p62h7
title: Data from: Population density and climate shape early-life survival and recruitment in a long-lived pelagic seabird

description: 1. Our understanding of demographic processes is mainly based on analyses
 of traits from the adult component of populations. Early-life demographic
 traits are poorly known mainly for methodological reasons. Yet, survival
 of juvenile and immature individuals is critical for the recruitment into
 the population and thus for the whole population dynamic, especially for
 long-lived species. This bias currently restrains our ability to fully
 understand population dynamics of long-lived species and life-history
 theory. 2. The goal of this study was to estimate the early-life
 demographic parameters of a long-lived species with a long immature period
 (9–10 years), to test for sex and age effects on these parameters and to
 identify the environmental factors encountered during the period of
 immaturity that may influence survival and recruitment. 3. Using
 capture–mark–recapture multievent models allowing us to deal with
 uncertain and unobservable individual states, we analysed a long-term data
 set of wandering albatrosses to estimate both age- and sex-specific
 early-life survival and recruitment. We investigated environmental factors
 potentially driving these demographic traits using climatic and fisheries
 covariates and tested for density dependence. 4. Our study provides for
 the first time an estimate of annual survival during the first 2 years at
 sea for an albatross species (0·801 ± 0·014). Both age and sex affected
 early-life survival and recruitment processes of this long-lived seabird
 species. Early-life survival and recruitment were highly variable across
 years although the sensitivity of young birds to environmental variability
 decreased with age. Early-life survival was negatively associated with sea
 surface temperature, and recruitment rate was positively related to both
 Southern Annular Mode and sea surface temperature. We found strong
 evidence for density-dependent mortality of juveniles. Population size
 explained 41% of the variation of this parameter over the study period. 5.
 These results indicate that early-life survival and recruitment were
 strongly age and sex dependent in a dimorphic long-lived species. In
 addition, early-life demographic parameters were affected by natal
 environmental conditions and by environmental conditions faced during the
 period of immaturity. Finally, our results constitute one of the first
 demonstrations of density dependence on juvenile survival in seabirds,
 with major consequences for our understanding of population dynamics in
 seabirds.
description: WanderingAlbatrossCovariates
DOI: 10.5061/dryad.73gp5
title: Data from: Plant reproductive strategies vary under low and high pollinator densities

description: Long-term variation in the population density of honey bees (Apis
 mellifera) across landscapes has been shown to correlate with variation in
 the floral traits of plant populations in these landscapes, suggesting
 that variations in pollinator population density and foraging rates can
 drive floral trait evolution of their host plants. However, it remained to
 be determined whether this variation in plant traits is associated with
 adaptive variation in plant reproductive strategies under conditions of
 high and low pollinator densities. Here we conducted a reciprocal
 transplant experiment to examine how this variation in floral traits,
 under conditions of either high and low pollinator density, impacted seed
 production in the Tibetan lotus (Saussurea nigrescens). In 2014 and 2015,
 we recorded the floral traits, pollinator visitation rates, and seed
 production of S. nigrescens populations grown in both home sites and
 foreign sites, where sites varied in honey bee population density. Our
 results demonstrated that the floral traits reflected those of their
 original population, regardless of their current location. However, seed
 production varied with both population origin and transplant site. Seed
 number was positively correlated with flower abundance in the
 pollinator-rich sites, but with nectar production in the pollinator-poor
 sites. Pollinator visitation rate was also positively correlated with
 flower number at pollinator-rich sites, and with nectar volume at
 pollinator-poor sites. Overall, the local genotype had higher seed
 production than nonlocal genotypes in home sites. However, when pollen is
 hand-supplemented, plants from pollinator-rich populations had higher seed
 production than plants from pollinator-poor populations, regardless of
 whether they were transplanted to pollinator-rich or -poor sites. These
 results suggest the plant genotypic differences primarily drive variation
 in pollinator attraction, and this ultimately drives variation in seed:
 ovule ratio. Thus, our results suggest that flowering plant species use
 different reproductive strategies to respond to high or low pollinator
 densities.
description: Data_10.1111.
 oik.04711
DOI: 10.5061/dryad.d8d01
title: Data from: Introduced Drosophila subobscura populations perform better than native populations during an oviposition choice task due to increased fecundity but similar learning ability

description: The success of invasive species is tightly linked to their fitness in a
 putatively novel environment. While quantitative components of fitness
 have been studied extensively in the context of invasive species, fewer
 studies have looked at qualitative components of fitness, such as
 behavioral plasticity, and their interaction with quantitative components,
 despite intuitive benefits over the course of an invasion. In particular,
 learning is a form of behavioral plasticity that makes it possible to
 finely tune behavior according to environmental conditions. Learning can
 be crucial for survival and reproduction of introduced organisms in novel
 areas, for example, for detecting new predators, or finding mates or
 oviposition sites. Here we explored how oviposition performance evolved in
 relation to both fecundity and learning during an invasion, using native
 and introduced Drosophila subobscura populations performing an
 ecologically relevant task. Our results indicated that, under comparable
 conditions, invasive populations performed better during our oviposition
 task than did native populations. This was because invasive populations
 had higher fecundity, together with similar cognitive performance when
 compared to native populations, and that there was no interaction between
 learning and fecundity. Unexpectedly, our study did not reveal an
 allocation trade-off (i.e., a negative relationship) between learning and
 fecundity. On the contrary, the pattern we observed was more consistent
 with an acquisition trade-off, meaning that fecundity could be limited by
 availability of resources, unlike cognitive ability. This pattern might be
 the consequence of escaping natural enemies and/or competitors during the
 introduction. The apparent lack of evolution of learning may indicate that
 the introduced population did not face novel cognitive challenges in the
 new environment (i.e., cognitive “pre-adaptation”). Alternatively, the
 evolution of learning may have been transient and therefore not detected.
description: Number of eggs laid by
 native and introduced Drosophila subobscura females during test phases
 after a learning taskHeader consists in :
 Date (day of start of the experiment), Type ("I" = Introduced,
 "N" = Native population), Pop (Population of origin), Cond
 ("B/FQ" : learning phase to avoid strawberry, "BQ/F" :
 learning phase to avoid banana), Test (Number of test phase), milieu.B
 (number of eggs laid in banana medium), milieu.F (number of eggs laid in
 strawberry medium), tot (total number of eggs laid), propB (proportion of
 eggs laid in the banana medium), propG (proportion of eggs laid in the
 correct medium), Lat (Latitdue of the populaiton of
 origin).dataS.txt
DOI: 10.5061/dryad.1n246
title: Data from: Emergent patterns of population genetic structure for a coral reef community

description: What shapes variation in genetic structure within a community of
 co-distributed species is a central but difficult question for the field
 of population genetics. With a focus on the isolated coral reef ecosystem
 of the Hawaiian Archipelago, we assessed how life history traits influence
 population genetic structure for 35 reef animals. Despite the
 archipelago's stepping stone configuration, isolation by distance was
 the least common type of genetic structure, detected in 4 species.
 Regional structuring (i.e., division of sites into genetically and
 spatially distinct regions) was most common, detected in 20 species, and
 nearly all endemics and habitat specialists. Seven species displayed
 chaotic (spatially unordered) structuring, and all were non-endemic
 generalist species. Chaotic structure also associated with relatively high
 global FST. Pelagic larval duration (PLD) was not a strong predictor of
 variation in population structure (R2= 0.22), but accounting for higher
 FST values of chaotic and invertebrate species, compared to regional
 structuring and fish species, doubled the power of PLD to explain
 variation in global FST (adjusted R2=0.50). Multivariate correlation of
 eight species traits to six genetic traits highlighted dispersal ability,
 taxonomy (i.e., fish vs. invertebrate) and habitat specialization as
 strongest influences on genetics, but otherwise left much variation in
 genetic traits unexplained. Considering that the study design controlled
 for many sampling and geographical factors, the extreme interspecific
 variation in spatial genetic patterns observed for Hawai'i marine
 species may be generated by demographic variability due to
 species-specific abundance and migration patterns and/or seascape and
 historical factors.
description: Selkoe_etal_Hawaii_genetics_dataset_5.8.14_supplSheet 1: Table of life history characteristics and metrics of genetic diversity and structure for 37 Hawaii reef species. Sheet 2: List of publications associated with genetic data for each species. Sheet 3: Input file used to run a redundancy analysis (RDA) on the data. Sheet 4: Table S1. Sheet 5: Table S2. Sheet 6: Fig. S1RDA_in_revisedR code used to run the redundancy analysis (RDA) using the input file in the companion excel file sheet 3.
DOI: 10.5061/dryad.27mk2
title: Data from: Inferring the timing of long-distance dispersal between Rail metapopulations using genetic and isotopic assignments

description: The stochastic and infrequent nature of long-distance dispersal often
 makes it difficult to detect. We quantified the frequency, distance, and
 timing of long-distance dispersal in a non-migratory, secretive wetland
 bird, the California black rail (Laterallus jamaicensis coturniculus),
 between an inland and a coastal metapopulation separated by greater than
 100 km. Using 15 microsatellites in conjunction with stable carbon,
 nitrogen, and sulfur isotopes, we classified rails as: residents of their
 capture population, recent migrants that dispersed to their capture
 population less than one year before capture, established migrants that
 dispersed to their capture population more than one year before capture,
 and seasonal migrants that dispersed away from their capture population to
 forage, but returned the next season. Most rails (195 of 204 or 95.6%)
 were classified as residents, but we detected two established migrants
 that had moved &gt;100 km more than a year before capture. Seven rails
 appeared to be seasonal migrants, but comparisons of feather isotope
 values with isotope values from wetland soils indicated that the isotope
 values in the feathers of these rails likely resulted from natural
 environmental variation (e.g., source element effects) rather than
 long-distance dispersal of individuals. Thus, these seven rails were most
 likely misassigned by isotopic population assignments due to small-scale
 variation in the isoscape. Using genetic data in conjunction with isotopic
 data allowed us to not only infer the timing of long-distance dispersal
 events, but to successfully track long-distance movements of non-migratory
 rails between metapopulations even when environmental variation of
 isotopes occurred across small spatial scales.
description: Black rail
 microsatellite genotypesMicrosatellite genotypes
 for California black rails captured in the San Francisco Bay Area
 (population 1) and Sierra Nevada Foothills (population 2). Data are
 formatted for Genepop and can be used as an input file for
 GeneClass2.msat_input_genepop_BAFH.txtStable isotopes for black railsStable C, N, and S values measured from feathers of California black rails captured in the San Francisco Bay Area and Sierra Nevada Foothills.Isotopes for dispersal repository.csvStable isotopes for wetland soilsStable C, N, and S values measured from wetland soils collected in the home ranges of rails in the Sierra Nevada Foothills.Soil Isotope Data repository.csv
DOI: 10.5061/dryad.hn07q
title: Data from: Effects of a non-native grass invasion decline over time

description: Most research on dynamics and impacts of plant invasions has evaluated
 patterns and effects over brief time periods (i.e. &lt;4 years). As
 such, little is known about the persistence of invasions and their
 long-term impacts on native species. To experimentally evaluate
 longer-term effects of invasions, we established field plots with native
 tree and herbaceous species and then invaded half of the plots with the
 most widespread invasive grass in the eastern United States (Microstegium
 vimineum). Over 8 years, we quantified invader and native plant biomass,
 native plant diversity, and tree density and size. Microstegium was
 dominant during the first 4 years of the experiment, constituting more
 than 60% of herbaceous plant biomass in the plots, and native herbaceous
 biomass was 57% lower and diversity was 44% lower in invaded vs. control
 plots. However, both Microstegium and herbaceous native species declined
 in later years. By the end of the experiment, Microstegium was only 2% of
 community biomass, and there was no difference in native herbaceous
 biomass in invaded and control plots. We applied a fire treatment in years
 6 and 7 to test if repeated disturbance is required to maintain invader
 dominance and to evaluate how this common management practice in eastern
 US forests affected invasive and native plants. Tree density was 65% lower
 and tree diameters were 28–51% smaller on average in fire-treated compared
 with control quadrants, resulting in significantly greater light
 availability in fire-treated areas. Consequently, Microstegium and native
 herbaceous species biomass increased significantly where fire was applied.
 However, only native species were persistent, and after 8 years,
 Microstegium was nearly absent, regardless of the fire treatment.
 Synthesis. The invasive grass was initially abundant and suppressed native
 species, but invader decline over time corresponded with succession to
 native herbaceous species dominance when fire was applied, and to native
 tree dominance without fire such that after 8 years, the initial effects
 of invasion were no longer apparent. Thus, our data provide some of the
 first experimental evidence that while the initial effects of plant
 invasions can be dramatic, invaders and their impacts may decline over
 time.
description: Flory et al herbaceous
 species and light dataBiomass data for
 invasive Microstegium vimineum and native herbaceous species. Percent
 light data for ground level and half meter above
 vegetation.Flory et al tree
 dataSpecies identity and
 diameter for trees found in reference and invaded plots with control and
 fire treatments in 2013.
DOI: 10.5061/dryad.p31j3
title: Data from: The cost of reinforcement in Drosophila yakuba

description: When the ranges of two species overlap and the species can hybridize, some
 individuals may waste gametes on inviable or infertile hybrids. In these
 cases, enhanced reproductive isolation may evolve as a byproduct of
 selection against maladaptive hybridization in a process called
 reinforcement. On the slopes of the African island of São Tomé, Drosophila
 yakuba and its endemic sister species D. santomea have a well-demarcated
 hybrid zone. D. yakuba females from within this zone, but not from outside
 it, show an increase in gametic isolation from males of D. santomea. To
 understand why reinforced gametic isolation does not spread to the whole
 geographic range and stays confined to areas of secondary contact, we
 studied the associated costs of reinforced gametic isolation in D. yakuba
 by using a combination of natural collections and experimental evolution.
 We found that D. yakuba males from sympatric populations sire fewer
 progeny than allopatric males when the female involved in the mating is an
 allopatric female. The results here shown suggest that the advantageous
 nature of reinforcement in D. yakuba is local, as its associated costs
 (i.e., reduced male fertility) might prevent its dispersal outside the
 hybrid zone.
description: Comeault_etal_dataRaw data from "Coevolution of male and female reproductive traits and a cascading effect of reinforcement in Drosophila yakuba" Aaron A. Comeault, Aarti Venkat and Daniel R. Matute
DOI: 10.5061/dryad.b5h65
title: Data from: Experimental species removals impact the architecture of pollination networks

description: Mutualistic networks are key for the creation and maintenance of
 biodiversity, yet are threatened by global environmental change. Most
 simulation models assume that network structure remains static after
 species losses, despite theoretical and empirical reasons to expect
 dynamic responses. We assessed the effects of experimental single
 bumblebee species removals on the structure of entire flower visitation
 networks. We hypothesized that network structure would change following
 processes linking interspecific competition with dietary niche breadth. We
 found that single pollinator species losses impact pollination network
 structure: resource complementarity decreased, while resource overlap
 increased. Despite marginally increased connectance, fewer plant species
 were visited after species removals. These changes may have negative
 functional impacts, as complementarity is important for maintaining
 biodiversity–ecological functioning relationships and visitation of rare
 plant species is critical for maintaining diverse plant communities.
description: raw network data, Brosi
 et al. Biology Letterspollination network
 data, with site, experimental state (control or manipulation), and plant
 and pollinator species. The README file has the identities of the
 manipulated (removed) bumble bee species for each site.Brosi-etal_BiolLett-raw-data.csv
DOI: 10.5061/dryad.4gv4g
title: Data from: Repeated intraspecific divergence in life span and aging of African annual fishes along an aridity gradient

description: Life span and aging are substantially modified by natural selection.
 Across species, higher extrinsic (environmentally related) mortality (and
 hence shorter life expectancy) selects for the evolution of more rapid
 aging. However, among populations within species, high extrinsic mortality
 can lead to extended life span and slower aging as a consequence of
 condition-dependent survival. Using within-species contrasts of eight
 natural populations of Nothobranchius fishes in common garden experiments,
 we demonstrate that populations originating from dry regions (with short
 life expectancy) had shorter intrinsic life spans and a greater increase
 in mortality with age, more pronounced cellular and physiological
 deterioration (oxidative damage, tumor load), and a faster decline in
 fertility than populations from wetter regions. This parallel
 intraspecific divergence in life span and aging was not associated with
 divergence in early life history (rapid growth, maturation) or
 pace-of-life syndrome (high metabolic rates, active behavior). Variability
 across four study species suggests that a combination of different aging
 and life-history traits conformed with or contradicted the predictions for
 each species. These findings demonstrate that variation in life span and
 functional decline among natural populations are linked, genetically
 underpinned, and can evolve relatively rapidly.
description: All datasets
 compilationA full compilation of
 datasets used in the paper in the form of separate txt files for separate
 analysesDryad data
 Evol2017.zip
DOI: 10.18712/nsd-nsd3263-v1
title: Improving safeguarding of children and young people through systemic cooperation in the prevention and intervention of harmful sexual behaviour

description: A significant proportion of sexual assaults against children are committed by other children and adolescents. The school system requires increased competence and closer collaboration with support services to prevent and address this growing societal challenge. This project aims to explore whether enhancing knowledge of sexual health among schools and support services can improve the protection of children and adolescents from sexual abuse. As part of the project, youth have been engaged in participatory processes to gain a better understanding of what children and adolescents themselves consider important for improving their protection. Furthermore, the study examines various cross-disciplinary and inter-agency collaboration methods within municipalities to further develop the cooperation between schools and support services in preventing and managing harmful sexual behavior (HSB). The development and research activities in this project lay the groundwork for creating a theoretical model that highlights the protective role of teachers and the collaboration between schools and support services.
DOI: 10.5281/zenodo.16911295
title: Average variant spacings along chromosome 22

description: Example average variant spacings for chromosome 22. When this is working OK I will make one for all chromosomes.
DOI: 10.5281/zenodo.16911296
title: Average variant spacings along chromosome 22

description: Example average variant spacings for chromosome 22. When this is working OK I will make one for all chromosomes.
DOI: 10.15468/dl.tjpyen
title: Occurrence Download

description: A dataset containing 3653 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is South America",
 "Country is Argentina",
 "OccurrenceStatus is Present",
 "TaxonKey is Apis Linnaeus, 1758",
 "Year 1948-2025"
 ]
}

 The dataset includes 3653 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010525-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xmbrc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mercurialis annua",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025105-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18457876
title: Mathematical modeling of the human brain (vol II): from glymphatics to deep learning,  Chapter 2 Dataset

description: This repository contains the code and data files required to reproduce the results, also included, from Mathematical modeling of the human brain (vol II): from glymphatics to deep learning.
DOI: 10.5281/zenodo.14536217
title: Mathematical modeling of the human brain (vol II): from glymphatics to deep learning,  Chapter 2 Dataset

description: This repository contains the code and data files required to reproduce the results, also included, from Mathematical modeling of the human brain (vol II): from glymphatics to deep learning.