cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26593043
title: Additional file 1 of Dissociation protocols used for sarcoma tissues bias the transcriptome observed in single-cell and single-nucleus RNA sequencing

description: Additional file 1: Figure S1. Gating strategy to enrich for single-cells and single-nuclei. Figure S2. Consensus of DEGs between Sarcoma Subtypes when comparing Warm and Nuclei Protocols. Figure S3. DEGs Biases introduced by Warm and Cold Protocols. Figure S4. Differences in Sequencing Performance. Figure S5. Classifying sample type based on bias scores for ES. Figure S6. Classifying sample type based on bias scores for OS and DSRCT. Figure S7. Classifying sample type based on bias scores for Neuroblastoma. Figure S8. Biases associated gene length in gene signatures. Figure S9. Integration recovers matching cell states from different dissociation methods for ES. Figure S10. Integration recovers matching cell states from different dissociation methods for DSRCT. Table S1. Number of cells analyzed pre- and post-quality control. Table S2. Gene sets curated from literature analyzed in PDX samples. The AddModuleScore function in Seurat v3 was used to observe the averaged gene expression of the gene sets. Table S3. Differentially expressed genes between Warm and Nuclei protocols for ES. Wilcoxon test was used to compare gene expression between protocols. Table S4. Differentially expressed genes between Warm and Nuclei protocols for OS. Wilcoxon test was used to compare gene expression between protocols. Table S5. Differentially expressed genes between Warm and Nuclei protocols for DSRCT. Wilcoxon test was used to compare gene expression between protocols. Table S6. Differentially expressed genes between Warm and Cold protocols for DSRCT. Wilcoxon test was used to compare gene expression between protocols. Table S7. Differentially expressed genes between Warm and Cold protocols for ES. Wilcoxon test was used to compare gene expression between protocols. Table S8. Top 200 longest genes with the most polyA regions. The polyA stretches were defined as greater than 15 A repeats within the full-length cDNA, including intronic and exonic regions for every gene.
DOI: 10.6084/m9.figshare.26656003
title: Additional file 1 of Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease

description: Additional file 1: Table S1. Clinical information for the datasets.
DOI: 10.6084/m9.figshare.26593031.v1
title: Additional file 5 of Analysis of the microglia transcriptome across the human lifespan using single cell RNA sequencing

description: Additional file 5: Table S2. The list of up regulated genes in each cluster identified through differential gene expression analysis. Table S3. The average expression of genes per developmental stage. Table S4. Top 100 highly variable genes per developmental stage. The average expression and standard deviation of genes are represented. Table S5. The list of genes whose expression decreased and incteased with age. Average expression of genes are represented. The genes are ordered according their standard deviation across age groups from highest to lowest. Table S6. Average expression of mouse and human samples which are used to perform principle component analysis. Average expression of pooled human oligodendrocyte samples is also represented.
DOI: 10.6084/m9.figshare.26656003.v1
title: Additional file 1 of Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease

description: Additional file 1: Table S1. Clinical information for the datasets.
DOI: 10.6084/m9.figshare.26656006
title: Additional file 2 of Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease

description: Additional file 2: Table S2. DEGs in the database.
DOI: 10.6084/m9.figshare.26656006.v1
title: Additional file 2 of Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease

description: Additional file 2: Table S2. DEGs in the database.
DOI: 10.6084/m9.figshare.26656009
title: Additional file 3 of Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease

description: Additional file 3: Table S3. Go analysis results.
DOI: 10.6084/m9.figshare.26656009.v1
title: Additional file 3 of Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease

description: Additional file 3: Table S3. Go analysis results.
DOI: 10.6084/m9.figshare.26656012
title: Additional file 4 of Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease

description: Additional file 4: Table S4. KEGG pathway results.
DOI: 10.6084/m9.figshare.26656012.v1
title: Additional file 4 of Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease

description: Additional file 4: Table S4. KEGG pathway results.
DOI: 10.6084/m9.figshare.26656024
title: Additional file 8 of Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease

description: Additional file 8: Table S8. Result of immune cell infiltration.
DOI: 10.6084/m9.figshare.26656024.v1
title: Additional file 8 of Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease

description: Additional file 8: Table S8. Result of immune cell infiltration.
DOI: 10.15468/dl.xquegh
title: Occurrence Download

description: A dataset containing 244 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.270067 -32.358004, 149.270067 -32.373725, 149.272313 -32.373725, 149.272313 -32.37597, 149.274559 -32.37597, 149.274559 -32.380462, 149.27905 -32.380462, 149.27905 -32.373725, 149.281296 -32.373725, 149.281296 -32.362496, 149.27905 -32.362496, 149.27905 -32.36025, 149.274559 -32.36025, 149.274559 -32.358004, 149.270067 -32.358004)), ((149.27905 -32.380462, 149.27905 -32.382708, 149.281296 -32.382708, 149.281296 -32.380462, 149.27905 -32.380462)))"
 ]
}

 The dataset includes 244 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066115-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/sp9dk5fhv4.1
title: arterial stiffness and sarcopenia (MR)

description: The supplementary material of arterial stiffness and sarcopenia (MR)
DOI: 10.6084/m9.figshare.26656054
title: Additional file 2 of Does the expensive brain hypothesis apply to amphibians and reptiles?

description: Supplementary Material 2: Dataset
DOI: 10.6084/m9.figshare.26656054.v1
title: Additional file 2 of Does the expensive brain hypothesis apply to amphibians and reptiles?

description: Supplementary Material 2: Dataset
DOI: 10.6084/m9.figshare.26656057
title: Additional file 3 of Does the expensive brain hypothesis apply to amphibians and reptiles?

description: Supplementary Material 3: R code
DOI: 10.6084/m9.figshare.26656057.v1
title: Additional file 3 of Does the expensive brain hypothesis apply to amphibians and reptiles?

description: Supplementary Material 3: R code
DOI: 10.15468/dl.cks94f
title: Occurrence Download

description: A dataset containing 732670 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Mongolia"
 ]
}

 The dataset includes 732670 records from 681 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016494-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tlzdit
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Total foraminifera counts of multinet POS247/2_MSN1390"
 ]
}

 The dataset includes 107 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005336-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pufb3g
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-65.97693 43.42253,-65.19948 43.27237,-64.49342 43.42253,-64.18888 44.26766,-64.87793 44.89546,-65.0923 45.14046,-65.97693 44.90604,-66.45509 44.3136,-66.27134 44.00735,-65.97693 43.42253))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lilaeopsis chinensis (L.) Kuntze"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033870-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bk354t
title: Occurrence Download

description: A dataset containing 48418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Naturalis Biodiversity Center (NL) - Porifera"
 ]
}

 The dataset includes 48418 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042370-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oobyrl
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence of mammalia relicts at site Burgtonna"
 ]
}

 The dataset includes 47 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005336-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eyaxxi
title: Occurrence Download

description: A dataset containing 748 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Brazil",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is Peru",
 "Country is Ecuador",
 "Country is Panama"
 ]
 },
 "TaxonKey is Zamia L."
 ]
}

 The dataset includes 748 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005336-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvu38e
title: Occurrence Download

description: A dataset containing 22790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is one of (Mexico, Brazil, Colombia, Argentina, Costa Rica, Guatemala, Honduras, Ecuador, Peru, Venezuela (Bolivarian Republic of), Suriname, Guyana, Uruguay, Paraguay, Bolivia (Plurinational State of), Chile, Panama, Nicaragua, Trinidad and Tobago, Cuba, Dominican Republic)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Viperidae"
 ]
}

 The dataset includes 22790 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012812-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ce95tp
title: Occurrence Download

description: A dataset containing 26014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Base de Datos de Flora de la Cuenca del Río Orinoco en Colombia"
 ]
}

 The dataset includes 26014 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042372-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqiatc
title: Occurrence Download

description: A dataset containing 2349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conocarpus erectus L.",
 "Geometry POLYGON((124.80000000000001 -79.99,124.80000000000001 80.24,-154.34 80.24,-154.34 -79.99,124.80000000000001 -79.99))",
 {
 "or" : [
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Unknown evidence",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen"
 ]
 }
 ]
}

 The dataset includes 2349 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005337-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t9x2ni
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium jorullense (Kunth) Spreng."
 ]
}

 The dataset includes 96 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005337-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nytf4u
title: Occurrence Download

description: A dataset containing 1241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección de mamíferos Museo de Ciencias Naturales de La Salle"
 ]
}

 The dataset includes 1241 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042377-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ihjeft
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chuquiraga weberbaueri Tovar"
 ]
}

 The dataset includes 21 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005337-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2rgng
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Costa Rica",
 "TaxonKey is Cedrela odorata L."
 ]
}

 The dataset includes 177 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033882-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lenmgx
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Suillus grevillei (Klotzsch) Singer",
 "Geometry POLYGON((14.381103 51.645294,14.820556 51.658926,14.985351 51.583896,15.150146 51.358061,15.205078 51.138001,15.084228 50.986098,14.974365 50.819818,14.754638 50.743407,14.468994 50.861444,14.183349 50.750359,13.666992 50.597186,13.436279 50.485473,13.238525 50.415518,13.007812 50.345460,12.777099 50.303375,12.469482 50.247204,12.359619 50.127621,11.865234 50.275298,11.711425 50.562304,12.073974 50.729501,12.216796 50.889174,12.447509 50.993014,12.030029 51.124212,11.953125 51.364921,11.997070 51.474540,12.271728 51.706608,12.733154 51.754240,13.381347 51.672555,13.370361 51.536085,13.798828 51.474540,14.381103 51.645294))"
 ]
}

 The dataset includes 22 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005337-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqrfke
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "OccurrenceStatus is Present",
 "TaxonKey is Tapirus indicus Desmarest, 1819"
 ]
}

 The dataset includes 89 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159349-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ocw7vm
title: Occurrence Download

description: A dataset containing 1064 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tubularia Linnaeus, 1758",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1064 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005337-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cd873a
title: Occurrence Download

description: A dataset containing 286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Angola",
 "TaxonKey is Diceros bicornis (Linnaeus, 1758)"
 ]
}

 The dataset includes 286 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042376-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z37sna
title: Occurrence Download

description: A dataset containing 577298 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ortalis Merrem, 1786"
 ]
}

 The dataset includes 577298 records from 427 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028455-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bpbwwp
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leopardus wiedii (Schinz, 1821)",
 "Year 2015-2023"
 ]
}

 The dataset includes 217 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028444-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11102426
title: Distribution of PAHs in hummocky tundra peatlands: Fibric Floatic Histosols.

description: Table 1. Distribution of PAHs in hummocky tundra peatlands: Fibric Floatic Histosols. The ecotone zone at the boundary between the southern tundra and forest tundra (the Usa river basin, Vorkuta district of the Komi Republic).

Table 2. Distribution of PAHs in hummocky tundra peatlands: Fibric Floatic Histosols. The ecotone of the northern and southern tundra (watershed of the Padimey-Ty-Vis and Korotaikha rivers, the Nenets Autonomous Okrug.
DOI: 10.5281/zenodo.11102427
title: Distribution of PAHs in hummocky tundra peatlands: Fibric Floatic Histosols.

description: Table 1. Distribution of PAHs in hummocky tundra peatlands: Fibric Floatic Histosols. The ecotone zone at the boundary between the southern tundra and forest tundra (the Usa river basin, Vorkuta district of the Komi Republic).

Table 2. Distribution of PAHs in hummocky tundra peatlands: Fibric Floatic Histosols. The ecotone of the northern and southern tundra (watershed of the Padimey-Ty-Vis and Korotaikha rivers, the Nenets Autonomous Okrug.
DOI: 10.15468/dl.qpktsc
title: Occurrence Download

description: A dataset containing 8195 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de anfibios - Museo de Herpetología de la Universidad de Antioquia"
 ]
}

 The dataset includes 8195 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005337-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujvrcp
title: Occurrence Download

description: A dataset containing 662 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección Mastozoológica de la Universidad Distrital Francisco José de Caldas"
 ]
}

 The dataset includes 662 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042389-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cj4wyc
title: Occurrence Download

description: A dataset containing 9213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "DatasetKey is one of (RATO - daily operations commissioned by the province East Flanders, Belgium, VMM - Rat control occurrences in Flanders, Belgium, MICA - Muskrat occurrences collected in West Flanders, Belgium)",
 "TaxonKey is Ondatra zibethicus (Linnaeus, 1766)",
 "Year 2023-2023"
 ]
}

 The dataset includes 9213 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017072-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcc6wa
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "DecimalLatitude is greater than 39.767040205123",
 "DecimalLatitude is less than 40.3570656821893",
 "DecimalLongitude is greater than -79.2653843820954",
 "DecimalLongitude is less than -78.5201339603598"
 ]
}

 The dataset includes 631 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005337-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gs849y
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Monitoreo hidrobiológico en el Río Aures para el tramo de influencia de la central Aures Bajo"
 ]
}

 The dataset includes 160 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042381-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1bw3l8
title: Occurrence Download

description: A dataset containing 27203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-0.703125 45.92669966808721, -0.703125 53.20471521743818, 13.359375 53.20471521743818, 13.359375 45.92669966808721, -0.703125 45.92669966808721))",
 "TaxonKey is Bistorta Adans."
 ]
}

 The dataset includes 27203 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005337-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eyv6u4
title: Occurrence Download

description: A dataset containing 60333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is UTA Reptiles"
 ]
}

 The dataset includes 60333 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042384-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.