cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2755pf
title: Occurrence Download

description: A dataset containing 5761 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Molorchus minor (Linnaeus, 1758), Molorchus minor (Linnaeus, 1758), Molorchus minor (Linnaeus, 1758), Molorchus minor (Linnaeus, 1758), Molorchus minor (Linnaeus, 1758), Molorchus minor (Linnaeus, 1758), Molorchus minor (Linnaeus, 1758), Molorchus minor (Linnaeus, 1758), Mycetophagus populi Fabricius, 1798)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 5761 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156275-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111283113
title: Ivory Pomegranate, DA 579

description: [Text Description:] (Belonging?) to the house of …, a holy thing of the priests ❧ [Text or Publication Number Note:] DA 579 ❧ [Medium:] Ivory ❧ [Script Note:] Hebrew ❧ [Physical Object Description:] Inscription in circular fashion on ivory pomegranate; six petals, two broken. 43mm height x 21mm diameter; formed head of staff or scepter. ❧ [Physical Object Note:] Hole in bottom 6.5mm. ❧ [Physical Object Note:] Object considered authentic, inscription contested. Came on the antiquities market in 1979, acquired by the Israel Museum in 1988. ❧
DOI: 10.25549/inscriptifact-ouc111157029
title: Record (silver owed mostly by groups of merchants from several towns and by some individuals), KTU 4.369

description: [Text or Publication Number Note:] KTU 4.369, KTU2 4.369, KTU3 4.369, CTU 4.369, CAT 4.369 ❧ [Excavation Description:] Found during excavations at Ras Shamra. ❧ [Medium:] Clay ❧ [Script Note:] Alphabetic Cuneiform ❧
DOI: 10.15468/dl.qhezsw
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Amphidium tortuosum (Hornsch.) Cufod."
 ]
}

 The dataset includes 58 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021640-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111156942
title: Record (silver owed mostly by groups of merchants from several towns and by some individuals), KTU 4.369

description: [Text or Publication Number Note:] KTU 4.369, KTU2 4.369, KTU3 4.369, CTU 4.369, CAT 4.369 ❧ [Excavation Description:] Found during excavations at Ras Shamra. ❧ [Medium:] Clay ❧ [Script Note:] Alphabetic Cuneiform ❧
DOI: 10.15468/dl.jf47dn
title: Occurrence Download

description: A dataset containing 13213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ligustrum obtusifolium Siebold & Zucc., Marsilea quadrifolia L., Acalypha virginica L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13213 records from 271 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148125-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110873607
title: Persepolis Fortification Anepigraphic Tablet 0417.204, PFAnep 0417.204

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0417.204, PFUT 0417-204 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, left edge, obverse. ❧ [Physical Object Note:] Small crack on left edge, cracks on obverse, reverse. Broken right edge, upper edge. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110873610
title: Persepolis Fortification Anepigraphic Tablet 0417.204, PFAnep 0417.204

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0417.204, PFUT 0417-204 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, left edge, obverse. ❧ [Physical Object Note:] Small crack on left edge, cracks on obverse, reverse. Broken right edge, upper edge. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110873625
title: Persepolis Fortification Anepigraphic Tablet 0417.204, PFAnep 0417.204

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0417.204, PFUT 0417-204 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, left edge, obverse. ❧ [Physical Object Note:] Small crack on left edge, cracks on obverse, reverse. Broken right edge, upper edge. (Upper and bottom edges may be reversed)
DOI: 10.15468/dl.qz9amd
title: Occurrence Download

description: A dataset containing 903734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 903734 records from 311 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105251-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110874844
title: Persepolis Fortification Elamite Tablet 0495, PF-NN 0495

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 0495 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on right edge, obverse, reverse and bottom edge toward right edge. Seal impression on left edge. ❧ [Physical Object Note:] Minor chipping on obverse toward round edge and reverse.
DOI: 10.15468/dl.ramj2c
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paraleyrodes pseudonaranjae Martin, 2001"
 ]
}

 The dataset includes 96 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140500-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110873937
title: Persepolis Fortification Anepigraphic Tablet 0417.206, PFAnep 0417.206

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0417.206, PFUT 0417-206 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse, upper edge? ❧ [Physical Object Note:] Right edge and most of bottom edge broken. Cracks on obverse, reverse, upper edge. Middle of reverse damaged.
DOI: 10.25549/inscriptifact-ouc110873266
title: Persepolis Fortification Anepigraphic Tablet 0417.203, PFAnep 0417.203

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0417.203, PFUT 0417-203 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, reverse, upper edge. ❧ [Physical Object Note:] All surfaces damaged. Upper left corner of tablet broken.
DOI: 10.15468/dl.pvjzzg
title: Occurrence Download

description: A dataset containing 10849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Kalanchoe delagoensis Eckl. & Zeyh., Alopecurus rendlei Eig, Senecio angulatus L.fil.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10849 records from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148135-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110873269
title: Persepolis Fortification Anepigraphic Tablet 0417.203, PFAnep 0417.203

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0417.203, PFUT 0417-203 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, reverse, upper edge. ❧ [Physical Object Note:] All surfaces damaged. Upper left corner of tablet broken.
DOI: 10.25549/inscriptifact-ouc110873385
title: Persepolis Fortification Anepigraphic Tablet 0417.203, PFAnep 0417.203

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0417.203, PFUT 0417-203 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, reverse, upper edge. ❧ [Physical Object Note:] All surfaces damaged. Upper left corner of tablet broken.
DOI: 10.15468/dl.hs98jz
title: Occurrence Download

description: A dataset containing 11543 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Heliotropium supinum L., Anemopsis californica (Nutt.) Hook. & Arn., Galega orientalis Lam.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11543 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148132-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110873388
title: Persepolis Fortification Anepigraphic Tablet 0417.203, PFAnep 0417.203

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0417.203, PFUT 0417-203 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, reverse, upper edge. ❧ [Physical Object Note:] All surfaces damaged. Upper left corner of tablet broken.
DOI: 10.15468/dl.p3pm8z
title: Occurrence Download

description: A dataset containing 2777646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Zosteropidae",
 "Year 1900-2024"
 ]
}

 The dataset includes 2777646 records from 239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061284-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14946847
title: Population prevalence of the major thyroid cancer-associated syndromes. Supplementary data.

description: This is the supplementary data for the manuscript "Population prevalence of the major thyroid cancer-associated syndromes" that is being reviewed by the Journal of Clinical Endocrinology and Metabolism. The file contains ClinVar pathogenic or likely pathogenic variants for three genes, RET, PTEN, and APC, found in two biobanks: All of Us Research Program and UK Biobank.
DOI: 10.5281/zenodo.14947035
title: Equality Before the Law and Freedom of Assembly in Pandemic-Ridden Poland

description: The table was elaborated for the research project Civil Disorder in Pandemic-ridden European Union. The latter was financially supported by the National Science Centre, Poland [grant number 2021/43/B/HS5/00290].
DOI: 10.5281/zenodo.14947036
title: Equality Before the Law and Freedom of Assembly in Pandemic-Ridden Poland

description: The table was elaborated for the research project Civil Disorder in Pandemic-ridden European Union. The latter was financially supported by the National Science Centre, Poland [grant number 2021/43/B/HS5/00290].
DOI: 10.5281/zenodo.14947033
title: abdomen CT data
DOI: 10.5281/zenodo.14947034
title: abdomen CT data
DOI: 10.5281/zenodo.14946878
title: Mu and delta opioid receptor antagonists increase the expression of social conditioned place preference in early adolescent mice

description: Here we present data concerning the role of endogenous opioid system in the rewarding effects of housing with siblings (as opposed to housing in isolation) in early- and late- adolescent male mice using selective opioid receptor antagonists.

Social reward was assessed using the social conditioned place preference task in early-adolescent (~34 days old) and late-adolescent (~41 old) male mice that received a single dose of cyprodime (1 mg/kg, i.p.), naltrindole (1 mg/kg, i.p) or norbinaltorphimine (10 mg/kg, i.p.) before the post test.

The behavioral test was performed as previously described:

Harda, Z., Chrószcz, M., Misiołek, K., Klimczak, M., Szumiec, Ł., Kaczmarczyk-Jarosz, M., & Rodriguez Parkitna, J. (2022). Establishment of a social conditioned place preference paradigm for the study of social reward in female mice. Scientific Reports, 12(1), 11271. https://doi.org/10.1038/s41598-022-15427-9

Two datasets are uploaded. First contains all data, the second contains data after outlier removal and trimming. The procedures of outlier identification and trimming are described below.

Outlier identification. The outlier test (Grubbs’) was performed on the following parameters: score, index 1, index 2, distance moved during the posttest. Outlier test was performed before the trimming of the data. The test was performed separately for the context A and B data, as the social score for context A (beech) was moderately higher than for context B (cellulose), which confirmed our previous results. 

 

sCPP data trimming

Python script written by Dr. Jakub Dzik (Nencki Institute of Experimental Biology, PAS) was used to trim the sCPP data in order to preserve an unbiased design (https://zenodo.org/record/8100281). The algorithm operates as follows:

1.       Segregates animals using the information provided in the column “Group”.

2.       Segregates animals in each group into two subgroups using the information provided in the column “Social context”.

3.       Counts animals in each subgroup. Excludes animals from a larger subgroup until the subgroups are equal in a following way (loop):

-          Checks if the mean “Pretest. Time in social context [%]” for a given group is lower than 50%

-          If yes, mice from the larger subgroup that have “Pretest. Time in social context [%]” lower than 50% are identified

-          If not, mice from the larger subgroup that have “Pretest. Time in social context [%]” equal or higher than 50% are identified

-          Random animal from the identified animals is excluded

4.       A column is added to the data table containing the information about the version of the trimming script used
DOI: 10.5281/zenodo.14946879
title: Mu and delta opioid receptor antagonists increase the expression of social conditioned place preference in early adolescent mice

description: Here we present data concerning the role of endogenous opioid system in the rewarding effects of housing with siblings (as opposed to housing in isolation) in early- and late- adolescent male mice using selective opioid receptor antagonists.

Social reward was assessed using the social conditioned place preference task in early-adolescent (~34 days old) and late-adolescent (~41 old) male mice that received a single dose of cyprodime (1 mg/kg, i.p.), naltrindole (1 mg/kg, i.p) or norbinaltorphimine (10 mg/kg, i.p.) before the post test.

The behavioral test was performed as previously described:

Harda, Z., Chrószcz, M., Misiołek, K., Klimczak, M., Szumiec, Ł., Kaczmarczyk-Jarosz, M., & Rodriguez Parkitna, J. (2022). Establishment of a social conditioned place preference paradigm for the study of social reward in female mice. Scientific Reports, 12(1), 11271. https://doi.org/10.1038/s41598-022-15427-9

Two datasets are uploaded. First contains all data, the second contains data after outlier removal and trimming. The procedures of outlier identification and trimming are described below.

Outlier identification. The outlier test (Grubbs’) was performed on the following parameters: score, index 1, index 2, distance moved during the posttest. Outlier test was performed before the trimming of the data. The test was performed separately for the context A and B data, as the social score for context A (beech) was moderately higher than for context B (cellulose), which confirmed our previous results. 

 

sCPP data trimming

Python script written by Dr. Jakub Dzik (Nencki Institute of Experimental Biology, PAS) was used to trim the sCPP data in order to preserve an unbiased design (https://zenodo.org/record/8100281). The algorithm operates as follows:

1.       Segregates animals using the information provided in the column “Group”.

2.       Segregates animals in each group into two subgroups using the information provided in the column “Social context”.

3.       Counts animals in each subgroup. Excludes animals from a larger subgroup until the subgroups are equal in a following way (loop):

-          Checks if the mean “Pretest. Time in social context [%]” for a given group is lower than 50%

-          If yes, mice from the larger subgroup that have “Pretest. Time in social context [%]” lower than 50% are identified

-          If not, mice from the larger subgroup that have “Pretest. Time in social context [%]” equal or higher than 50% are identified

-          Random animal from the identified animals is excluded

4.       A column is added to the data table containing the information about the version of the trimming script used
DOI: 10.15468/dl.83z3d7
title: Occurrence Download

description: A dataset containing 29203916 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anas platyrhynchos Linnaeus, 1758"
 ]
}

 The dataset includes 29203916 records from 5090 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000987-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28504238
title: The 10,455 assembled metagenomic genomes (MAGs) of the gut microbiota from wild birds.

description: A total of 718 publicly available wild bird gut metagenome samples were collected from multiple databases. These samples were subsequently assembled and binned, resulting in 10,455 assembled metagenomic genomes (MAGs) of the wild bird gut microbiota.
DOI: 10.15468/dl.ntn7xr
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quinqueloculina carinatastriata (Wiesner, 1923)"
 ]
}

 The dataset includes 39 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009329-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14960526
title: Questionnaire and Survey Results: Design and Technical Requirements for Data Trustees (Blinded)

description: This document presents the complete questionnaire and the aggregated survey results from an expert study on the design and technical requirements for data trustees. It includes Likert scale items, multiple-answer questions, and associated visualizations (bar charts) that illustrate the collective responses. This is the blinded version intended for the review process. After the blind review, an updated (authorized) version may be uploaded under the same DOI via Zenodo’s versioning system.
DOI: 10.5281/zenodo.14992879
title: Questionnaire and Survey Results: Design and Technical Requirements for Data Trustees (Blinded)

description: This document presents the complete questionnaire and the aggregated survey results from an expert study on the design and technical requirements for data trustees. It includes Likert scale items, multiple-answer questions, and associated visualizations (bar charts) that illustrate the collective responses. This is the blinded version intended for the review process. After the blind review, an updated (authorized) version may be uploaded under the same DOI via Zenodo’s versioning system.