cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dqskpf
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melolobium obcordatum Harv."
 ]
}

 The dataset includes 109 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054757-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2974w9
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microcos oligoneura Burret"
 ]
}

 The dataset includes 333 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054758-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mz9cc4
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Millettia cana Benth."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054759-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhgrc9
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Medinilla decora A.C.Sm."
 ]
}

 The dataset includes 13 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054760-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3nrhvr
title: Occurrence Download

description: A dataset containing 12658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Geneva Herbarium – General Collection (G)",
 "GadmGid is BRA",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 12658 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054761-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zv8cmm
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marrubium alyssoides Pomel"
 ]
}

 The dataset includes 66 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054762-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.6871268.v2
title: Structural characterization of a Δ<sup>3</sup>, Δ<sup>2</sup>-enoyl-CoA isomerase from <i>Pseudomonas aeruginosa</i>: implications for its involvement in unsaturated fatty acid metabolism

description: Gene <i>PA4980</i> from <i>Pseudomonas aeruginosa</i> encodes a putative enoyl-coenzyme A hydratase/isomerase that is associated with the function of the biofilm dispersion-inducing signal molecule <i>cis</i>-2-decenoic acid. To elucidate the role of <i>PA4980</i> in <i>cis</i>-2-decenoic acid biosynthesis, we reported the crystal structure of its protein product at 2.39 Å. The structural analysis and substrate binding prediction suggest that it acts as a monofunctional enoyl-coenzyme A isomerase, implicating an alternative pathway of the <i>cis</i>-2-decenoic acid synthesis.
DOI: 10.6084/m9.figshare.25158749
title: Lakes_characteristics

description: This data file contain information on zooplankton assemblages and collected characteristics of Tatra lakes
DOI: 10.6084/m9.figshare.22599775
title: Additional file 1 of A simple method to isolate structurally and chemically intact brain vascular basement membrane for neural regeneration following traumatic brain injury

description: Additional file 1.
DOI: 10.3886/e101249v1-145922
title: Inequality and education, Spain 1860 - Explorations in Economic History

description: This article contributes to the debate on institutions and economic
development by examining the historical link between land access inequality and
education. Using information from the 464 districts existent in mid-19th
century Spain, this paper confirms that there is a negative relationship
between the fraction of farm labourers and male literacy rates. This result
does not disappear when a large set of potential confounding factors are
included in the analysis. The use of the Reconquest
as a quasi-natural experiment allows us to rule out further concerns about
potential endogeneity. In addition, controlling for different sources of spatial
dependence does not explain away this result either. By analysing the
rural-urban divide and the gender-specific information on the number of schools
and teachers, as well as schooling enrolment rates, this paper also explores
the mechanisms behind the observed relationship. As well as supply factors, our
results show that demand effects also played a significant role in explaining the
negative impact of inequality on education.
DOI: 10.6084/m9.figshare.20501857
title: Additional file 2 of Construction of a novel model based on cell-in-cell-related genes and validation of KRT7 as a biomarker for predicting survival and immune microenvironment in pancreatic cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.20501857.v1
title: Additional file 2 of Construction of a novel model based on cell-in-cell-related genes and validation of KRT7 as a biomarker for predicting survival and immune microenvironment in pancreatic cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.6871427.v1
title: original data and descriptions from Inhibition mechanism of Ca<sup>2+</sup>, Mg<sup>2+</sup> and Fe<sup>3+</sup> in fine cassiterite flotation using octanohydroxamic acid

description: The existence of metal ions should not be ignored in both hydrometallurgy and flotation. In this study, the effects of Ca<sup>2+</sup>, Mg<sup>2+</sup> and Fe<sup>3+</sup> on the flotation performance of cassiterite using octanohydroxamic acid (OHA) as the collector were investigated by micro-flotation tests, X-ray photoelectron spectroscopy (XPS), Fourier transform infrared (FTIR) spectroscopy, contact angle, zeta (<i>ζ</i>) potential measurements and atomic force microscopy (AFM) imaging. The results of the flotation and contact angle experiments showed that the addition of Ca<sup>2+</sup>, Mg<sup>2+</sup> and Fe<sup>3+</sup> significantly decreased both the recovery and contact angle of cassiterite with pH in the range from 6.0 to 12.0 in the presence of OHA collector. <i>ζ-</i>Potential measurements, solution chemistry analysis and FTIR measurements indicated that the flotation recovery of the cassiterite declined due to the CaOH<sup>+</sup>, MgOH<sup>+</sup> and Fe(OH)<sub>3</sub> sites on the cassiterite surface. XPS results indicated that the chemisorption of OHA on the cassiterite surface and its adsorption combined with calcium ions’ effects finally changed the chemical properties of the cassiterite surface. The AFM images also revealed that new species Fe(OH)<sub>3</sub> of Fe<sup>3+</sup> formed and adsorbed on the cassiterite surface at pH 9.0. The adsorption of Fe(OH)<sub>3</sub> reduced the adsorption of OHA on the cassiterite surface, thus the hydrophobicity of cassiterite was deteriorated.
DOI: 10.6084/m9.figshare.17205115
title: Additional file 5 of Benchmarking UMI-based single-cell RNA-seq preprocessing workflows

description: Additional file 5 Table S4: Summary of quality control thresholds across datasets and preprocessing workflows.
DOI: 10.6084/m9.figshare.17205115.v1
title: Additional file 5 of Benchmarking UMI-based single-cell RNA-seq preprocessing workflows

description: Additional file 5 Table S4: Summary of quality control thresholds across datasets and preprocessing workflows.
DOI: 10.6084/m9.figshare.17205106.v1
title: Additional file 2 of Benchmarking UMI-based single-cell RNA-seq preprocessing workflows

description: Additional file 2 Information of experimental designs, GEO accession numbers, data structure, biological noise levels, and expected number of cells and number of clusters are provided.
DOI: 10.6084/m9.figshare.22599727
title: Additional file 1 of Genome-wide identification of MBD gene family members in Eleutherococcus senticosus with their expression motifs under drought stress and DNA demethylation

description: Additional file 1. Table S1. EsMBDs promoter region cis-acting element. Table S2. WoLF PSORT Predicts Subcellular Localization of EsMBD Proteins. Table S3. Methyl-binding domain in the genome of Eleutherococcus senticosus (Rupr. et Maxim) Maxim and Aralia elata (Miq.) Seem. Table S4. Expressed MBD genes in Eleutherococcus senticosus (Rupr. et Maxim) Maxim of different relative water content. Table S5. Expressed MBD genes in Eleutherococcus senticosus (Rupr. et Maxim) Maxim of different saponin content. Table S6. Primers for qRT-PCR. Table S7. Primers for Vector construction and Subcellular localization.
DOI: 10.6084/m9.figshare.6871268
title: Structural characterization of a Δ<sup>3</sup>, Δ<sup>2</sup>-enoyl-CoA isomerase from <i>Pseudomonas aeruginosa</i>: implications for its involvement in unsaturated fatty acid metabolism

description: Gene <i>PA4980</i> from <i>Pseudomonas aeruginosa</i> encodes a putative enoyl-coenzyme A hydratase/isomerase that is associated with the function of the biofilm dispersion-inducing signal molecule <i>cis</i>-2-decenoic acid. To elucidate the role of <i>PA4980</i> in <i>cis</i>-2-decenoic acid biosynthesis, we reported the crystal structure of its protein product at 2.39 Å. The structural analysis and substrate binding prediction suggest that it acts as a monofunctional enoyl-coenzyme A isomerase, implicating an alternative pathway of the <i>cis</i>-2-decenoic acid synthesis.
DOI: 10.25375/uct.24609138
title: Elevated southern hemisphere moisture availability during glacial periods

description: This data is a supplement to Weij et al. 2024, <i>Nature</i>, and includes all datasets generated in this study. Additionally, Wavemetrics IgorPro code is made available for calculating and plotting probabilistic KDEs. Please cite this study when using this code.
DOI: 10.25375/uct.24609138.v1
title: Elevated southern hemisphere moisture availability during glacial periods

description: This data is a supplement to Weij et al. 2024, <i>Nature</i>, and includes all datasets generated in this study. Additionally, Wavemetrics IgorPro code is made available for calculating and plotting probabilistic KDEs. Please cite this study when using this code.
DOI: 10.18716/dch/a.00000048
title: Daten zur 3D-Visualisierung der Kreuter'schen Karten

description: Die hier archivierten Daten entstanden während der Masterarbeit mit dem Titel “Von der Karte zum interaktiven Modell: Franz Kreuters Topographische Sammlung als Virtual-Reality-Anwendung” von Lukas Lammers im Jahr 2023. Das Projekt wurde bereits im Jahr 2022 vorbereitet und fand Anfang 2024 seinen Abschluss.

Ziel war es, aus den sog. Kreuter’schen Karten, einem Bestand im Historischen Archiv mit rheinischem Bildarchiv der Stadt Köln, ein 3D-Modell zu erstellen. Auf Grundlage dieses Modells wurden ein Video, eine Desktop-Anwendung und eine Virtual-Reality-Anwendung entwickelt. Diese drei Medien wurden in Nutzendenstudien miteinander verglichen.

Die archivierten Daten enthalten unter anderem die hochaufgelösten Digitalisate der Karten, die im Dezember 2022 und Januar 2023 nach ihrer Restaurieung angefertigt wurden, das daraus entstandene 3D-Modell in verschiedenen Formaten, Arbeitsfotos, die beiden Anwendungen und das Video, Zwischenstände der Masterarbeit, sowie die Ergebnisse der Nutzendenstudien.
DOI: 10.6084/m9.figshare.16834724
title: Cytochrome P450 2J2 inhibits the proliferation and angiogenesis of retinal vascular endothelial cells by regulating the Notch signaling pathway in a hypoxia-induced retinopathy model

description: Retinopathy of Prematurity (ROP), a type of retinal neovascularization in premature infants, has become a serious problem that drastically affects the quality of life of premature infants. ROP is associated with angiogenesis and neovascularization. Here, we aimed to explain the function and latent roles of Cytochrome P450 2J2 (CYP2J2) in hypoxia-induced retinopathy in retinal vascular endothelial cells (HRVECs). HRVECs were stimulated with hypoxia for 24 h to establish an <i>in vitro</i> retinopathy model. Cell viability and migration were evaluated using 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT) and Transwell assays, respectively. Protein and gene expression was determined by reverse transcription quantitative real-time polymerase chain reaction (RT-qPCR) and Western blot analysis. We observed that pcDNA3.1(+)-CYP2J2 promoted CYP2J2 and Jagged1 expression, while Dll4 was down-regulated in hypoxia-stimulated HRVECs. Additionally, pcDNA3.1(+)-CYP2J2 inhibited HRVEC viability, reduced PCNA expression, and inhibited the migration of HRVECs. Further, the Notch pathway was inhibited in the Hypoxia+pcDNA3.1(+)-CYP2J2 group. Opposite results were observed upon Terfenadone treatment in hypoxia induced HRVECs. Finally, our findings further verified that DAPT promotes the effects of CYP2J2 on cell viability, migration, and Notch signaling in hypoxia-induced HRVECs, while EDTA reversed the inhibitory effects of CYP2J2 on hypoxia-induced HRVECs. In conclusions, CYP2J2 was found to inhibit the viability and angiogenesis of HRVECs by inhibiting Notch signaling in a hypoxia-induced retinopathy model.
DOI: 10.6084/m9.figshare.8970518
title: Nature of the Late Ordovician-Early Silurian Xiaohe section, Hunan-Hubei area, South China: implications for the Kwangsian Orogeny

description: The intraplate Kwangsian Orogeny is a key orogenic event in South China in the mid-Paleozoic. We re-examined the evidence for the Yichang Uplift, an inferred geographic feature during the Kwangsian Orogeny, to evaluate its timing and nature. Field, sedimentological, mineralogical and geochronological data were collected from the Late Ordovician-Early Silurian Xiaohe section, Hunan-Hubei area. Results suggest that the Xiaohe section is composed of the Late Ordovician Wufeng Formation black shale in the lower part and the Early Silurian Longmaxi Formation black shale in the upper part. We found that the clay layers interbedded in the Wufeng Formation are altered rhyolitic tuffs instead of parts of a subaerial wreathing crust. LA-ICP-MS U-Pb dating of zircons in the top tuff layer of the Wufeng Formation yielded an age of 447.0 + 1.4/- 2.2 Ma, consistent with biostratigraphic data, providing a radiometric constraint for the sedimentary break existed between the Wufeng and Longmaxi formations and confirming the absence of the Hirnantian (latest Ordovician) Guanyinqiao Formation in the study area. Our data support that the Yichang Uplift was a submarine highland possibly initiated by the reactivation of the inherited Jianshi-Enshi Fault in the Hunan-Hubei area during the Kwangsian Orogeny.
DOI: 10.6084/m9.figshare.8970518.v1
title: Nature of the Late Ordovician-Early Silurian Xiaohe section, Hunan-Hubei area, South China: implications for the Kwangsian Orogeny

description: The intraplate Kwangsian Orogeny is a key orogenic event in South China in the mid-Paleozoic. We re-examined the evidence for the Yichang Uplift, an inferred geographic feature during the Kwangsian Orogeny, to evaluate its timing and nature. Field, sedimentological, mineralogical and geochronological data were collected from the Late Ordovician-Early Silurian Xiaohe section, Hunan-Hubei area. Results suggest that the Xiaohe section is composed of the Late Ordovician Wufeng Formation black shale in the lower part and the Early Silurian Longmaxi Formation black shale in the upper part. We found that the clay layers interbedded in the Wufeng Formation are altered rhyolitic tuffs instead of parts of a subaerial wreathing crust. LA-ICP-MS U-Pb dating of zircons in the top tuff layer of the Wufeng Formation yielded an age of 447.0 + 1.4/- 2.2 Ma, consistent with biostratigraphic data, providing a radiometric constraint for the sedimentary break existed between the Wufeng and Longmaxi formations and confirming the absence of the Hirnantian (latest Ordovician) Guanyinqiao Formation in the study area. Our data support that the Yichang Uplift was a submarine highland possibly initiated by the reactivation of the inherited Jianshi-Enshi Fault in the Hunan-Hubei area during the Kwangsian Orogeny.
DOI: 10.6084/m9.figshare.7397687.v1
title: Additional file 3: of Dynamic transcriptomes of resistant and susceptible peach lines after infestation by green peach aphids (Myzus persicae SĂźlzer) reveal defence responses controlled by the Rm3 locus

description: RNA-seq data for sixteen aphid feeding time points after analysis by DESeq R. (XLSX 17265 kb)
DOI: 10.6084/m9.figshare.17205103
title: Additional file 1 of Benchmarking UMI-based single-cell RNA-seq preprocessing workflows

description: Additional file 1 Table S1: Summary of the scRNA-seq preprocessing workflows compared.
DOI: 10.6096/moose.780
title: Atmospheric deposition - Cap Bear

description: Dry, wet and metal deposition monitoring over Cap Ferrat in the framework of the Mediterranean Oceanic Observing System on Environment (MOOSE)
DOI: 10.6084/m9.figshare.7397732
title: Additional file 5: of Dynamic transcriptomes of resistant and susceptible peach lines after infestation by green peach aphids (Myzus persicae SĂźlzer) reveal defence responses controlled by the Rm3 locus

description: Enriched MapMan category terms for the significantly differentially expressed genes of group I altered by aphid feeding. (XLS 2705 kb)
DOI: 10.6084/m9.figshare.7397732.v1
title: Additional file 5: of Dynamic transcriptomes of resistant and susceptible peach lines after infestation by green peach aphids (Myzus persicae SĂźlzer) reveal defence responses controlled by the Rm3 locus

description: Enriched MapMan category terms for the significantly differentially expressed genes of group I altered by aphid feeding. (XLS 2705 kb)
DOI: 10.6084/m9.figshare.6871427
title: original data and descriptions from Inhibition mechanism of Ca<sup>2+</sup>, Mg<sup>2+</sup> and Fe<sup>3+</sup> in fine cassiterite flotation using octanohydroxamic acid

description: The existence of metal ions should not be ignored in both hydrometallurgy and flotation. In this study, the effects of Ca<sup>2+</sup>, Mg<sup>2+</sup> and Fe<sup>3+</sup> on the flotation performance of cassiterite using octanohydroxamic acid (OHA) as the collector were investigated by micro-flotation tests, X-ray photoelectron spectroscopy (XPS), Fourier transform infrared (FTIR) spectroscopy, contact angle, zeta (<i>ζ</i>) potential measurements and atomic force microscopy (AFM) imaging. The results of the flotation and contact angle experiments showed that the addition of Ca<sup>2+</sup>, Mg<sup>2+</sup> and Fe<sup>3+</sup> significantly decreased both the recovery and contact angle of cassiterite with pH in the range from 6.0 to 12.0 in the presence of OHA collector. <i>ζ-</i>Potential measurements, solution chemistry analysis and FTIR measurements indicated that the flotation recovery of the cassiterite declined due to the CaOH<sup>+</sup>, MgOH<sup>+</sup> and Fe(OH)<sub>3</sub> sites on the cassiterite surface. XPS results indicated that the chemisorption of OHA on the cassiterite surface and its adsorption combined with calcium ions’ effects finally changed the chemical properties of the cassiterite surface. The AFM images also revealed that new species Fe(OH)<sub>3</sub> of Fe<sup>3+</sup> formed and adsorbed on the cassiterite surface at pH 9.0. The adsorption of Fe(OH)<sub>3</sub> reduced the adsorption of OHA on the cassiterite surface, thus the hydrophobicity of cassiterite was deteriorated.
DOI: 10.6084/m9.figshare.7397753
title: Additional file 6: of Dynamic transcriptomes of resistant and susceptible peach lines after infestation by green peach aphids (Myzus persicae SĂźlzer) reveal defence responses controlled by the Rm3 locus

description: Gene annotation and expression of the fine mapped Rm3 locus. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.7397753.v1
title: Additional file 6: of Dynamic transcriptomes of resistant and susceptible peach lines after infestation by green peach aphids (Myzus persicae SĂźlzer) reveal defence responses controlled by the Rm3 locus

description: Gene annotation and expression of the fine mapped Rm3 locus. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.7397786.v1
title: Additional file 6: of Discovery and annotation of a novel transposable element family in Gossypium

description: Table S4. Distribution of CICR-LTR in different tetraploid genome assemblies. (XLSX 633 kb)
DOI: 10.6084/m9.figshare.11592102
title: Ag_Optical_Constant

description: Optical dielectric constant of epitaxial silver film
DOI: 10.6084/m9.figshare.11592102.v1
title: Ag_Optical_Constant

description: Optical dielectric constant of epitaxial silver film
DOI: 10.6084/m9.figshare.25144469
title: OCS Experimental AFPADs and Theoretical AFPAD notebooks

description: <b>Unaligned_XS_and_Beta2</b>: Notebook for exporting lab-frame PADs from ePolyScat output files from https://doi.org/10.6084/m9.figshare.24451669<b>OCS_orbs8-11_AFBLMs_from_VM-ADMs</b>: Notebook for calculating and exporting energy- and time-sliced alignment frame PADs. Requires ePolyScat output files from https://doi.org/10.6084/m9.figshare.24451669 and alignment distribution moment vectors as inputs.<b>OCS_scan_betas</b>: Alignment-frame photoelectron yields and angular distribution parameters following ionization of OCS at 23.6 eV
DOI: 10.6084/m9.figshare.25144469.v3
title: OCS Experimental AFPADs and Theoretical AFPAD notebooks

description: <b>Unaligned_XS_and_Beta2</b>: Notebook for exporting lab-frame PADs from ePolyScat output files from https://doi.org/10.6084/m9.figshare.24451669<b>OCS_orbs8-11_AFBLMs_from_VM-ADMs</b>: Notebook for calculating and exporting energy- and time-sliced alignment frame PADs. Requires ePolyScat output files from https://doi.org/10.6084/m9.figshare.24451669 and alignment distribution moment vectors as inputs.<b>OCS_scan_betas</b>: Alignment-frame photoelectron yields and angular distribution parameters following ionization of OCS at 23.6 eV
DOI: 10.6084/m9.figshare.25144469.v2
title: Experimental data and Theoretical Alignment Frame PAD notebooks

description: <b>Unaligned_XS_and_Beta2</b>: Notebook for exporting lab-frame PADs from ePolyScat output files from https://doi.org/10.6084/m9.figshare.24451669<b>OCS_orbs8-11_AFBLMs_from_VM-ADMs</b>: Notebook for calculating and exporting energy- and time-sliced alignment frame PADs. Requires ePolyScat output files from https://doi.org/10.6084/m9.figshare.24451669 and alignment distribution moment vectors as inputs.<b>OCS_scan_betas</b>: Alignment-frame photoelectron yields and angular distribution parameters following ionization of OCS at 23.6 eV
DOI: 10.15151/esrf-es-1432052995
title: XAS for Cu-Metal-Oixde catalyst for CO2RR

description: The electrochemical CO2 reduction reaction (CO2RR) has attracted a lot of attention over the past 10 years. The coupling of Cu with metal oxides offers great opportunities for this goal. In our group, we established a synthetic methodology, called colloidal atomic layer deposition (c-ALD) which allows the tuning of the morphology and thickness of Cu|MOx nanoparticles with different shell thicknesses from monolayers to tens of nm. We have discovered that spherical Cu@AlOx are active for CO2RR but, more importantly, stable during the reaction, which is opposite to what is observed for spherical copper nanoparticles alone.