cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4600849
title: Supplementary Data for The salmon louse genome: copepod features and parasitic adaptations.

description: This dataset contains supporting data for the manuscript: Skern-Mauritzen <em>et al. </em>The salmon louse genome: copepod features and parasitic adaptations. Copepods encompass a range of ecological roles from parasites to phytoplankton grazers linking primary producers to higher trophic levels. Despite these important roles, copepod genome assemblies are scarce. <em>Lepeophtheirus salmonis</em> is an economically and ecologically important ectoparasitic copepod found on salmonid fish. We present the 695.4 Mbp <em>L. salmonis</em> genome assembly containing ≈60% repetitive regions and 13081 annotated protein-coding genes. The genome comprises 14 autosomes and a ZZ-ZW sex chromosome system. Assembly assessment identified 92.4% of the expected arthropod genes. Transcriptomics supported annotation and indicated a marked shift in gene expression after host attachment, including down-regulation of genes related to circadian rhythm coinciding with abandoning diurnal migration. The genome shows evolutionary signatures including loss of genes needed for peroxisome biogenesis, presence of numerous FNII domains, and an incomplete heme homeostasis pathway suggesting heme proteins to be obtained from the host. Despite large capacity to develop resistance against chemical treatments <em>L. salmonis</em> exhibits low numbers of many genes involved in detoxification. Supplementary data is explained in detail and referenced in the manuscript and the file Supplementary Material 30062021 REVISED.pdf BUSCO-V5-results-species-comparison.tar.gz contains the raw output and results of all BUSCO V 5.0.0 runs on the genomes in Table 1 of the manuscript and Supplementary_Table_GenomeStats.xlsx GCA_000181255.2_ASM18125v2_genomic.fna.RepMasker.o ..., GCA_001005205.1_lsal_atl_canada_female_v1_genomic. ..., GCA_001005235.1_lsal_atl_canada_male_v1_genomic.fn ... and TableS4-1-LSalAtl2s.fasta.RepMasker.out.gz contain original output from RepeatMasker Lsalmonis-RepeatModeler-families.fa.gz and Lsalmonis-RepeatModeler-families.stk.gz contain all repeat families as original output from RepeatModeler
description: The project was funded by The Ministry of Trade and Fisheries, The Norwegian Seafood Research Fund (project 900400). This research was funded by the Research Council Norway, SFI-Sea Lice Research Centre, grant number 203513/O30.
DOI: 10.6084/m9.figshare.14508543
title: 679246_Supplementary Materials.zip

description: Supplementary Material for the article: <b>Genetic characteristics of human parainfluenza virus types 1–4 from patients with clinical respiratory tract infection in China</b>
DOI: 10.48420/14912841
title: XRD data set

description: All low angle XRD raw data
DOI: 10.48420/14912847
title: Nitrogen porosimetry raw data

description: Raw N2 porosimetry data sets
DOI: 10.48420/14912847.v2
title: Nitrogen porosimetry raw data

description: Raw N2 porosimetry data sets
DOI: 10.48420/14912847.v1
title: Nitrogen porosimetry raw data

description: Raw N2 porosimetry data sets
DOI: 10.5517/ccdc.csd.cc2706fx
title: CCDC 2055778: Experimental Crystal Structure Determination

description: Related Article: Mikhail A. Bondarenko, Alexander S. Novikov, Taisiya S. Sukhikh, Ilya V. Korolkov, Maxim N. Sokolov, Sergey A. Adonin|2021|J.Mol.Struct.|1244|130942|doi:10.1016/j.molstruc.2021.130942
DOI: 10.5517/ccdc.csd.cc2706gy
title: CCDC 2055779: Experimental Crystal Structure Determination

description: Related Article: Mikhail A. Bondarenko, Alexander S. Novikov, Taisiya S. Sukhikh, Ilya V. Korolkov, Maxim N. Sokolov, Sergey A. Adonin|2021|J.Mol.Struct.|1244|130942|doi:10.1016/j.molstruc.2021.130942
DOI: 10.5517/ccdc.csd.cc27zfwk
title: CCDC 2084839: Experimental Crystal Structure Determination

description: Related Article: Jun Liu, Lu Ying Yang, Feng Luo|2021|J.Solid State Chem.|301|122369|doi:10.1016/j.jssc.2021.122369
DOI: 10.6084/m9.figshare.14914968
title: Supplementary Material for: Risk Factors and Clinical Outcomes of Cognitive Impairment in Diabetic Patients Undergoing Peritoneal Dialysis

description: <b><i>Introduction:</i></b> Cognitive impairment (CI) is common in patients with CKD or diabetes mellitus (DM). However, the relevance between DM and CI in diabetic patients undergoing peritoneal dialysis (PD) has not been clearly established. This study aimed to explore the role of DM in CI, the association of glycemic control with CI, and clinical outcomes of CI in diabetic PD patients. <b><i>Methods:</i></b> Continuous ambulatory PD (CAPD) patients followed up in our PD center between 2014 and 2016 were enrolled. The participants were followed until an endpoint was reached or December 2017. Demographic data and clinical characteristics were collected, and laboratory parameters were measured. The Montreal Cognitive Assessment (MoCA) was used to evaluate global cognitive function, and a score of &lt;26 was considered to indicate CI. A propensity score matching according to age, gender, and mean arterial pressure was conducted between the DM and non-DM groups. <b><i>Results:</i></b> A total of 913 CAPD patients were enrolled, of whom 186 (20.4%) had diabetes. After appropriate matching, 175 patients in the DM group and 270 patients in the non-DM group were included. Patients with diabetes had a higher prevalence of CI and lower scores for visuospatial/executive function, naming, language, delayed recall, and orientation. Higher HbA1c (odds ratio [OR], 1.547; 95% confidence interval [95% CI], 1.013–2.362) and cardiovascular disease (CVD; OR, 2.926; 95% CI, 1.139–7.516) significantly correlated with a risk of CI in diabetic patients. During a median of 26.0 (interquartile range 13.5–35.6) months of follow-up, diabetic patients with CI demonstrated a significantly lower survival rate than those without CI, and CI was an independent risk factor for mortality after adjustment (hazard ratio, 7.224; 95% CI, 1.694–30.806). However, they did not show worse technique survival or higher peritonitis rate than patients without CI. <b><i>Conclusions:</i></b> HbA1c and CVD are independent risk factors for CI in diabetic patients undergoing CAPD, and CI is independently associated with a higher risk of mortality.
DOI: 10.6084/m9.figshare.14914968.v1
title: Supplementary Material for: Risk Factors and Clinical Outcomes of Cognitive Impairment in Diabetic Patients Undergoing Peritoneal Dialysis

description: <b><i>Introduction:</i></b> Cognitive impairment (CI) is common in patients with CKD or diabetes mellitus (DM). However, the relevance between DM and CI in diabetic patients undergoing peritoneal dialysis (PD) has not been clearly established. This study aimed to explore the role of DM in CI, the association of glycemic control with CI, and clinical outcomes of CI in diabetic PD patients. <b><i>Methods:</i></b> Continuous ambulatory PD (CAPD) patients followed up in our PD center between 2014 and 2016 were enrolled. The participants were followed until an endpoint was reached or December 2017. Demographic data and clinical characteristics were collected, and laboratory parameters were measured. The Montreal Cognitive Assessment (MoCA) was used to evaluate global cognitive function, and a score of &lt;26 was considered to indicate CI. A propensity score matching according to age, gender, and mean arterial pressure was conducted between the DM and non-DM groups. <b><i>Results:</i></b> A total of 913 CAPD patients were enrolled, of whom 186 (20.4%) had diabetes. After appropriate matching, 175 patients in the DM group and 270 patients in the non-DM group were included. Patients with diabetes had a higher prevalence of CI and lower scores for visuospatial/executive function, naming, language, delayed recall, and orientation. Higher HbA1c (odds ratio [OR], 1.547; 95% confidence interval [95% CI], 1.013–2.362) and cardiovascular disease (CVD; OR, 2.926; 95% CI, 1.139–7.516) significantly correlated with a risk of CI in diabetic patients. During a median of 26.0 (interquartile range 13.5–35.6) months of follow-up, diabetic patients with CI demonstrated a significantly lower survival rate than those without CI, and CI was an independent risk factor for mortality after adjustment (hazard ratio, 7.224; 95% CI, 1.694–30.806). However, they did not show worse technique survival or higher peritonitis rate than patients without CI. <b><i>Conclusions:</i></b> HbA1c and CVD are independent risk factors for CI in diabetic patients undergoing CAPD, and CI is independently associated with a higher risk of mortality.
DOI: 10.6084/m9.figshare.14914986
title: Supplementary Material for: High Triglyceride Glucose Index Is Associated with Poor Outcomes in Ischemic Stroke Patients after Reperfusion Therapy

description: <b><i>Introduction:</i></b> The triglyceride glucose index (TyG index) is a simple and reliable surrogate marker of insulin resistance (IR) that can predict functional outcomes and mortality after acute ischemic stroke (AIS). However, it is unclear whether the TyG index is associated with functional outcomes in patients with stroke who receive reperfusion therapy. Thus, we aimed to explore the prognostic value of the TyG index for the clinical outcomes of patients with AIS who underwent reperfusion therapy. <b><i>Methods:</i></b> We retrospectively assessed patients with AIS, with occlusion of either the middle cerebral artery or internal carotid artery, who were evaluated using multiphase computed tomography angiography (mCTA) and received reperfusion therapy. The TyG index was calculated as “ln [fasting glucose level (mg/dL) × triglyceride level (mg/dL)]/2.” Collateral status was evaluated using mCTA based on the University of Calgary Scale. Clinical outcomes included 3-month functional outcomes, early neurological deterioration, recanalization status, and hemorrhagic transformation. <b><i>Results:</i></b> In all, 183 subjects (age 69.5 ± 12.4 years; men, 59.0%) were enrolled. The median initial National Institutes of Health Stroke Scale score was 15.0 (interquartile range [IQR] 11–18). The median TyG index was 4.8 (IQR, 4.6–5.1), and 158 patients had TyG levels &gt;4.49, which represents the presence of IR. On univariate analysis, a higher TyG index was associated with both early neurological deterioration (18.4 vs. 0.0%, <i>p</i> = 0.041) and a 3-month poor functional outcome (mRS3-6) (61.4 vs. 32.0%, <i>p</i> = 0.011). After adjusting for multiple variables, including age, sex, type of reperfusion therapy, recanalization status, initial stroke severity, type of stroke, and history of hypertension and diabetes, high TyG index remained an independent predictor of a poor 3-month functional outcome (adjusted OR, 5.22; <i>p</i> = 0.014). However, TyG levels were not significantly associated with collateral status (<i>p</i> = 0.756). <b><i>Conclusions:</i></b> IR, represented by a high TyG index, may predict poor 3-month functional outcomes in patients with AIS who undergo reperfusion therapy.
DOI: 10.5281/zenodo.4696775
title: Hydrological, physicochemical and metabolic activity data for streams in the Japanese Alps

description: A series of files with hydrological, physicochemical and metabolic activity data from a study investigating the environmental dynamics of six stream systems in the Japanese Alps.
DOI: 10.5281/zenodo.4696774
title: Hydrological, physicochemical and metabolic activity data for streams in the Japanese Alps

description: A series of files with hydrological, physicochemical and metabolic activity data from a study investigating the environmental dynamics of six stream systems in the Japanese Alps.
DOI: 10.25625/xlnknk/6ap5a5
title: rawdata.tab

description: Supplementary Material
DOI: 10.25625/xlnknk
title: Nitrogen and phosphorus control soil methane uptake in tropical montane forests

description: data for "Nitrogen and phosphorus control soil methane uptake in tropical montane forests"
DOI: 10.6084/m9.figshare.14871087
title: ED Figure 3 - Coherence metrics of the electron spin qubit

description: Datasets for electron Rabi oscilations, T1, T2echo, and T2*.The first three datasets are in csv format and can be loaded using the QCoDeS fork https://github.com/nulinspiratie/qcodes.<br>The T2* dataset is a Matlab file
DOI: 10.6084/m9.figshare.14871087.v1
title: ED Figure 3 - Coherence metrics of the electron spin qubit

description: Datasets for electron Rabi oscilations, T1, T2echo, and T2*.The first three datasets are in csv format and can be loaded using the QCoDeS fork https://github.com/nulinspiratie/qcodes.<br>The T2* dataset is a Matlab file
DOI: 10.6084/m9.figshare.14871201.v1
title: ED Figure 4 - Nuclear spin coherence times

description: Datasets for nuclear coherence times T2* and T2echo, as well as dependence of T2echo on an offresonant RF drive with varying amplitude.The T2* dataset is a Matlab file, whereas the T2echo datasets are CSV files that can be loaded using the QCoDeS fork https://github.com/nulinspiratie/qcodes
DOI: 10.6084/m9.figshare.14871201
title: ED Figure 4 - Nuclear spin coherence times

description: Datasets for nuclear coherence times T2* and T2echo, as well as dependence of T2echo on an offresonant RF drive with varying amplitude.The T2* dataset is a Matlab file, whereas the T2echo datasets are CSV files that can be loaded using the QCoDeS fork https://github.com/nulinspiratie/qcodes
DOI: 10.6084/m9.figshare.14871369
title: Supplementary Figure 3 - Single-qubit GST

description: This is the dataset for single-qubit gate set tomography, performed on each of the two nuclei that are coupled via a shared electron.The dataset can be loaded using the QCoDeS fork https://github.com/nulinspiratie/Qcodes.The datasets also contain the processed counts for each circuit, as well as the GST report
DOI: 10.6084/m9.figshare.14871369.v1
title: Supplementary Figure 3 - Single-qubit GST

description: This is the dataset for single-qubit gate set tomography, performed on each of the two nuclei that are coupled via a shared electron.The dataset can be loaded using the QCoDeS fork https://github.com/nulinspiratie/Qcodes.The datasets also contain the processed counts for each circuit, as well as the GST report
DOI: 10.5281/zenodo.5040367
title: Corinthian claybeds dataset

description: This dataset includes all geological and archaeometric information on the different clays collected and analyzed in the region of the Corinthia as part of the fieldwork for the dissertation <em>Forming Identities: Technological Choices and Pottery Manufacturers in Archaic Corinth</em>, later published, with revisions, by BAR International Series as Rodriguez-Alvarez, Emilio. 2021. <em>Forming Identities: Technological experimentation in Archaic Corinthian workshops and the origins of the Black Figure pottery style</em>. Oxford: BAR Publishing. For a more detailed information of all files included please read the Readme pdf.<br> <br> Hope you find all files useful for your research!
description: I have listed here the upload type as dataset despite it also includes some images because these are only relevant when analyzed alongside the data on the clays included here.
description: {"references": ["Rodriguez-Alvarez, Emilio. 2019. \"Forming Identities: Technological Choices and Pottery Manufacturers in Archaic Corinth.\" ProQuest Dissertations Publishing. http://search.proquest.com/docview/2173181365/?pq-origsite=primo."]}
DOI: 10.5281/zenodo.5040366
title: Corinthian claybeds dataset

description: This dataset includes all geological and archaeometric information on the different clays collected and analyzed in the region of the Corinthia as part of the fieldwork for the dissertation <em>Forming Identities: Technological Choices and Pottery Manufacturers in Archaic Corinth</em>, later published, with revisions, by BAR International Series as Rodriguez-Alvarez, Emilio. 2021. <em>Forming Identities: Technological experimentation in Archaic Corinthian workshops and the origins of the Black Figure pottery style</em>. Oxford: BAR Publishing. For a more detailed information of all files included please read the Readme pdf.<br> <br> Hope you find all files useful for your research!
description: I have listed here the upload type as dataset despite it also includes some images because these are only relevant when analyzed alongside the data on the clays included here.
description: {"references": ["Rodriguez-Alvarez, Emilio. 2019. \"Forming Identities: Technological Choices and Pottery Manufacturers in Archaic Corinth.\" ProQuest Dissertations Publishing. http://search.proquest.com/docview/2173181365/?pq-origsite=primo."]}
DOI: 10.6084/m9.figshare.14898978.v1
title: Figure 3 - Two-qubit GST

description: This is the dataset for the two-qubit gate set tomography, performed on the two nuclei that are coupled via a shared electron.The dataset can be loaded using the QCoDeS fork https://github.com/nulinspiratie/Qcodes.The datasets also contain the processed counts for each circuit, as well as the GST report
DOI: 10.6084/m9.figshare.14898978
title: Figure 3 - Two-qubit GST

description: This is the dataset for the two-qubit gate set tomography, performed on the two nuclei that are coupled via a shared electron.The dataset can be loaded using the QCoDeS fork https://github.com/nulinspiratie/Qcodes.The datasets also contain the processed counts for each circuit, as well as the GST report
DOI: 10.5281/zenodo.5037891
title: pXRF samples of Archaic Corinthian vessels

description: This dataset includes all information on the pXRF analyses performed on a series of pottery finds from the archaeological site of Corinth, Greece. These samples were first presented in the dissertation<em> Forming Identities: Technological Choices and Pottery Manufacturers in Archaic Corinth</em>, and later published, with revisions, by BAR International Series as Rodriguez-Alvarez, Emilio. 2021.<em> Forming Identities: Technological experimentation in Archaic Corinthian workshops and the origins of the Black Figure pottery style</em>. Oxford: BAR Publishing. For a more detailed information of all files included please read the Readme pdf.<br> <br> Hope you find all files useful for your research!
description: I have listed here the upload type as dataset despite it includes some images as well because these are not relevant in themselves but only as part of the whole package.
description: {"references": ["Rodriguez-Alvarez, Emilio. 2019. \"Forming Identities: Technological Choices and Pottery Manufacturers in Archaic Corinth.\" ProQuest Dissertations Publishing. http://search.proquest.com/docview/2173181365/?pq-origsite=primo."]}
DOI: 10.5281/zenodo.5037890
title: pXRF samples of Archaic Corinthian vessels

description: This dataset includes all information on the pXRF analyses performed on a series of pottery finds from the archaeological site of Corinth, Greece. These samples were first presented in the dissertation<em> Forming Identities: Technological Choices and Pottery Manufacturers in Archaic Corinth</em>, and later published, with revisions, by BAR International Series as Rodriguez-Alvarez, Emilio. 2021.<em> Forming Identities: Technological experimentation in Archaic Corinthian workshops and the origins of the Black Figure pottery style</em>. Oxford: BAR Publishing. For a more detailed information of all files included please read the Readme pdf.<br> <br> Hope you find all files useful for your research!
description: I have listed here the upload type as dataset despite it includes some images as well because these are not relevant in themselves but only as part of the whole package.
description: {"references": ["Rodriguez-Alvarez, Emilio. 2019. \"Forming Identities: Technological Choices and Pottery Manufacturers in Archaic Corinth.\" ProQuest Dissertations Publishing. http://search.proquest.com/docview/2173181365/?pq-origsite=primo."]}
DOI: 10.6084/m9.figshare.14898981.v1
title: Figure 4 - GHZ echo and oscillations

description: This dataset contains the two GHZ measurements:- Creating a GHZ state and reverting the circuit, i.e. a GHZ echo. Measurements are taken along every step of the circuit (Fig. 4b)- Creating a GHZ state and reverting the circuit, while varying the angles of the reversal pulses. This results in oscillations that probe the GHZ coherence (Fig. 4c).<br>The dataset can be loaded using the QCoDeS fork https://github.com/nulinspiratie/Qcodes.The datasets also contain the processed counts for each circuit.Note that each circuit is repeated three times with different mapping pulses to extract the eight state populations of the nuclei and electron (see SM for details).
DOI: 10.6084/m9.figshare.14898981
title: Figure 4 - GHZ echo and oscillations

description: This dataset contains the two GHZ measurements:- Creating a GHZ state and reverting the circuit, i.e. a GHZ echo. Measurements are taken along every step of the circuit (Fig. 4b)- Creating a GHZ state and reverting the circuit, while varying the angles of the reversal pulses. This results in oscillations that probe the GHZ coherence (Fig. 4c).<br>The dataset can be loaded using the QCoDeS fork https://github.com/nulinspiratie/Qcodes.The datasets also contain the processed counts for each circuit.Note that each circuit is repeated three times with different mapping pulses to extract the eight state populations of the nuclei and electron (see SM for details).
DOI: 10.25392/leicester.data.14494557
title: Insula of the Menander at Pompeii

description: This database accompanies Penelope M. Allison, The Insula of the Menander in Pompeii vol iii: The Finds, a Contextual Study (Oxford University Press 2006).The dataset contains some 2000 artefacts found in this insula, including over 1000 photographs, 583 drawings. An introduction and an explanation of database fields assist the reader in using this database, which is searchable on a number of locational, typological, functional and other descriptive fields.
DOI: 10.6084/m9.figshare.14898984.v1
title: Supplementary Figure 6 - Extraction of electron-nuclear states

description: This dataset contains a measurement that verifies the technique to extract the eight state populations of the nuclei + electron by swapping state populations, followed by nuclear readout. See Supplementary Information for details.<br>The dataset can be loaded using the QCoDeS fork https://github.com/nulinspiratie/Qcodes
DOI: 10.6084/m9.figshare.14898984
title: Supplementary Figure 6 - Extraction of electron-nuclear states

description: This dataset contains a measurement that verifies the technique to extract the eight state populations of the nuclei + electron by swapping state populations, followed by nuclear readout. See Supplementary Information for details.<br>The dataset can be loaded using the QCoDeS fork https://github.com/nulinspiratie/Qcodes
DOI: 10.6084/m9.figshare.14915055
title: FIJI Script 1 from Quantifying variation in female internal genitalia: no evidence for plasticity in response to sexual conflict risk in a seed beetle

description: FIJI script designed to identify and segment the reproductive tract lumen for repeatable orientation of the reproductive tracts in Amira 6.0. Used by Wyber et al. (2021).
DOI: 10.6084/m9.figshare.14915058.v1
title: Script from Quantifying variation in female internal genitalia: no evidence for plasticity in response to sexual conflict risk in a seed beetle

description: File containing all code used to analyse data from Wyber et al. (2021)
DOI: 10.6084/m9.figshare.14915055.v1
title: FIJI Script 1 from Quantifying variation in female internal genitalia: no evidence for plasticity in response to sexual conflict risk in a seed beetle

description: FIJI script designed to identify and segment the reproductive tract lumen for repeatable orientation of the reproductive tracts in Amira 6.0. Used by Wyber et al. (2021).
DOI: 10.6084/m9.figshare.14915058
title: Script from Quantifying variation in female internal genitalia: no evidence for plasticity in response to sexual conflict risk in a seed beetle

description: File containing all code used to analyse data from Wyber et al. (2021)