cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17711790
title: PSR-Genome-wide Association Studies and QTL Mapping for Traits Deviating from Normal Distribution

description: Part I. Supplementary Material.zip

This package contains the supplementary materials supporting the results and analyses reported in the manuscript, including datasets, figures, codes, and methodological notes. All files in this part are directly related to data analysis, simulation studies, and method validation.





Data S1.csv – Phenotype data for the RIL rice population (binary trait).




Data S2.csv – Genotype (SNP) data for the RIL rice population.




Data S3.csv – Kinship matrix for the RIL rice population.




Data S4.csv – Phenotype data for the IMF2 hybrid rice population (quantitative KGW trait).




Data S5.csv – Genotype (SNP) data for the IMF2 hybrid rice population.




Data S6.csv – Kinship matrix for the IMF2 hybrid rice population.




Figure S1.png – Genome-wide association analyses of binary and ordinal traits were performed using GMMAT and POLMM, and the results were compared with those obtained by the GLMM and PSR methods. The Manhattan plots show highly similar patterns across methods, indicating consistent association signals.




Figure S2.tif – This figure compares the statistical properties of four methods (PSR, Laplace, BGLIMM, and BGLR) in terms of parameter estimation and test statistics. Although the PSR method shows slight bias in effect estimation, its test statistics remain unbiased and computationally efficient, supporting its use for association detection.




Supplementary Code S1.sas – SAS code (PROC IML) for simulating ordinal traits from KGW.




Supplementary Code S2.sas – SAS code for Bayesian analyses and simulation studies (PROC BGLIMM).




Supplementary Code S3.zip – Complete package containing simulation scripts, GWAS pipelines, and power/type I error analyses.




Supplementary Notes.docx – Mathematical and methodological notes supporting the study.



Part II. Code, User Manual, and Example Data

This part provides the PSR-GLMM/R software resources for general use, including the implementation code, documentation, and example materials. These files are intended to facilitate software usage, reproducibility, and extension to new datasets.





Demo code/ – Example scripts demonstrating how to run the PSR-GLMM/R software.




Demo Data/ – Example datasets for quick testing and demonstration purposes.




Source code/ – Full source code of the PSR-GLMM/R software.




User manual/ – Documentation describing data formats, parameters, and usage instructions.
DOI: 10.5281/zenodo.17711789
title: PSR-Genome-wide Association Studies and QTL Mapping for Traits Deviating from Normal Distribution

description: Part I. Supplementary Material.zip

This package contains the supplementary materials supporting the results and analyses reported in the manuscript, including datasets, figures, codes, and methodological notes. All files in this part are directly related to data analysis, simulation studies, and method validation.





Data S1.csv – Phenotype data for the RIL rice population (binary trait).




Data S2.csv – Genotype (SNP) data for the RIL rice population.




Data S3.csv – Kinship matrix for the RIL rice population.




Data S4.csv – Phenotype data for the IMF2 hybrid rice population (quantitative KGW trait).




Data S5.csv – Genotype (SNP) data for the IMF2 hybrid rice population.




Data S6.csv – Kinship matrix for the IMF2 hybrid rice population.




Figure S1.png – Genome-wide association analyses of binary and ordinal traits were performed using GMMAT and POLMM, and the results were compared with those obtained by the GLMM and PSR methods. The Manhattan plots show highly similar patterns across methods, indicating consistent association signals.




Figure S2.tif – This figure compares the statistical properties of four methods (PSR, Laplace, BGLIMM, and BGLR) in terms of parameter estimation and test statistics. Although the PSR method shows slight bias in effect estimation, its test statistics remain unbiased and computationally efficient, supporting its use for association detection.




Supplementary Code S1.sas – SAS code (PROC IML) for simulating ordinal traits from KGW.




Supplementary Code S2.sas – SAS code for Bayesian analyses and simulation studies (PROC BGLIMM).




Supplementary Code S3.zip – Complete package containing simulation scripts, GWAS pipelines, and power/type I error analyses.




Supplementary Notes.docx – Mathematical and methodological notes supporting the study.



Part II. Code, User Manual, and Example Data

This part provides the PSR-GLMM/R software resources for general use, including the implementation code, documentation, and example materials. These files are intended to facilitate software usage, reproducibility, and extension to new datasets.





Demo code/ – Example scripts demonstrating how to run the PSR-GLMM/R software.




Demo Data/ – Example datasets for quick testing and demonstration purposes.




Source code/ – Full source code of the PSR-GLMM/R software.




User manual/ – Documentation describing data formats, parameters, and usage instructions.
DOI: 10.57841/casdc.0006577
title: Schwarz晶体热导率测试数据
DOI: 10.15468/dl.s38378
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Begonia masoniana",
 "Year 1970-2025"
 ]
}

 The dataset includes 37 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060046-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30918863
title: TranscriptomeABA_origin.rda

description: TranscriptomeABA_origin is an R data object containing original transcriptome data derived from microarray experiments under abscisic acid (ABA) treatment conditions. This dataset was used to generate the demo dataset TranscriptomeABA included in the SRscore package and is provided to support reproducibility of the analyses described in the associated publication.
DOI: 10.6084/m9.figshare.30918863.v1
title: TranscriptomeABA_origin.rda

description: TranscriptomeABA_origin is an R data object containing original transcriptome data derived from microarray experiments under abscisic acid (ABA) treatment conditions. This dataset was used to generate the demo dataset TranscriptomeABA included in the SRscore package and is provided to support reproducibility of the analyses described in the associated publication.
DOI: 10.15468/dl.eecr99
title: Occurrence Download

description: A dataset containing 200841 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.19_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 200841 records from 310 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060015-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57841/casdc.0006578
title: Schwarz晶体Pt的热磁曲线和等温磁化曲线测量数据
DOI: 10.57841/casdc.0006579
title: Schwarz晶体Pt的低温磁电阻数据
DOI: 10.15468/dl.8a6cts
title: Occurrence Download

description: A dataset containing 15076 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbarium fund of the Mangyshlak experimental botanical garden (MANG)"
 ]
}

 The dataset includes 15076 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060047-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hjddj
title: Occurrence Download

description: A dataset containing 47263 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kalmia latifolia"
 ]
}

 The dataset includes 47263 records from 288 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060045-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17984336
title: ChoreoDrops: Experimental Data and Design Materials (Supplementary dataset to master's thesis and TEI paper)

description: This version contains the corrected dataset based on the finalizedexperimental protocol and data structure.

Version 1 contained preliminary and incorrect data that did not reflectthe actual experimental conditions and should not be used for analysis.Please refer to this Version 2 for the finalized dataset.

This dataset includes raw experimental data, design files,and demonstration materials supporting a master's thesisand a peer-reviewed TEI paper on ChoreoDrops.

The dataset reports observed physical behaviors only.It does not claim learning, internal evaluation, agency,or computational functionality.
DOI: 10.15468/dl.z52d3b
title: Occurrence Download

description: A dataset containing 611790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dives dives",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 611790 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060009-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18453/rosdok_id00004746
title: Mittelniederdeutsche Urkunden des ostniederdeutschen Sprachraums (MndUrk): eine TEI-Datenpublikation der Urkundentranskriptionen aus dem DFG-Projekt Atlas frühmittelniederdeutscher Schreibsprachen (1994–2005) : [research data]

description: Die Datenpublikation umfasst 1942 Urkundentranskriptionen aus dem DFG-Projekt Atlas frühmittelniederdeutscher Schreibsprachen (1994–2005, Standort Rostock). Es handelt sich um mittelniederdeutsche Urkunden des 14. und 15. Jahrhunderts aus dem ostniederdeutschen Sprachraum, die als RTF-Dateien vorlagen. Für die Datenpublikation wurden die Dateien kontrolliert und ihre Metadaten vereinheitlicht und ergänzt. Fehlerhafte Sonderzeichen wurden durch Unicode-Zeichen ersetzt. Im Rahmen der Datenpublikation stehen die Urkundentranskriptionen in den Formaten TEI, HTML und PDF zur Verfügung.
DOI: 10.15468/dl.9qc72f
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "StartDayOfYear 325-366",
 "TaxonKey is Acanthophora spicifera"
 ]
}

 The dataset includes 212 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060051-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57841/casdc.0006582
title: 极限晶粒金属的三维表征的数据集
DOI: 10.15468/dl.9d87ga
title: Occurrence Download

description: A dataset containing 1453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gypaetus barbatus",
 "Year 1971-2010"
 ]
}

 The dataset includes 1453 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060052-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eyhmca
title: Occurrence Download

description: A dataset containing 7176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Continent derived from coordinates, Country derived from coordinates, Occurrence status inferred from individual count)",
 "TaxonKey is Xenopus laevis"
 ]
}

 The dataset includes 7176 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060053-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30918980
title: landslide

description: Using multi-source remote sensing data combined with the Intermittent Small Baseline Subset InSAR (ISBAS) technique, we obtained the spatiotemporal distribution characteristics of TLs in the study area.
DOI: 10.6084/m9.figshare.30918980.v1
title: landslide

description: Using multi-source remote sensing data combined with the Intermittent Small Baseline Subset InSAR (ISBAS) technique, we obtained the spatiotemporal distribution characteristics of TLs in the study area.
DOI: 10.15468/dl.xwgq8r
title: Occurrence Download

description: A dataset containing 763737 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Ochlodes sylvanus",
 "Year 2000-2024"
 ]
}

 The dataset includes 763737 records from 2057 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060022-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9xs7p
title: Occurrence Download

description: A dataset containing 4299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((28.93598 40.91673,29.59996 40.91673,29.59996 41.18246,28.93598 41.18246,28.93598 40.91673))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Passer domesticus (Linnaeus, 1758)",
 "Year 2010-2022"
 ]
}

 The dataset includes 4299 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204674-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3wgyf
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scardinius plotizza Heckel & Kner, 1858"
 ]
}

 The dataset includes 45 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0322177-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2skm89
title: Occurrence Download

description: A dataset containing 7628 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaetodipus hispidus (Baird, 1858)"
 ]
}

 The dataset includes 7628 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005161-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xeammj
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-121.91778 8.38425,20.91778 8.38425,20.91778 65.61575,-121.91778 65.61575,-121.91778 8.38425))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phloeotribus liminaris (Harris, 1852) Douglas, Bouchard, Anderson, Tonnancour, Vigneault & Webster, 2013"
 ]
}

 The dataset includes 58 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204675-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.asb6g3
title: Occurrence Download

description: A dataset containing 3704 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kigelia africana (Lam.) Benth."
 ]
}

 The dataset includes 3704 records from 227 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0362474-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bz3vp5
title: Occurrence Download

description: A dataset containing 513 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pilosocereus leucocephalus (Poselg.) Byles & G.D.Rowley"
 ]
}

 The dataset includes 513 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014605-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myanyr
title: Occurrence Download

description: A dataset containing 823 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ornithostaphylos Small"
 ]
}

 The dataset includes 823 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204704-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vscju
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lophura edwardsi (Oustalet, 1896)"
 ]
}

 The dataset includes 270 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0363604-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4jdf9
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Brachypodius atriceps (Temminck, 1822))",
 "BasisOfRecord is one of (Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 34 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017129-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mp7amx
title: Occurrence Download

description: A dataset containing 13687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Clitocybe brumalis (Fr.) Quél., Infundibulicybe gibba (Pers.) Harmaja)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 13687 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164674-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvjb5q
title: Occurrence Download

description: A dataset containing 485 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alchemilla fallax Buser ex Besse"
 ]
}

 The dataset includes 485 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008616-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgmagz
title: Occurrence Download

description: A dataset containing 1581 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plectaneia Thouars"
 ]
}

 The dataset includes 1581 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200586-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68zmym
title: Occurrence Download

description: A dataset listing the 145 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Digitalización y sistematización de las colecciones biológicas del INECOL (Herbario)",
 "Geometry POLYGON((-93.2076 18.23011,-92.9698 18.22361,-92.96402 18.40858,-93.20175 18.41949,-93.2076 18.23011))",
 "HasCoordinate is true"
 ]
}

 The dataset's 145 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005037-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfjps7
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Bradypus variegatus Schinz, 1825"
 ]
}

 The dataset includes 138 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127250-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qss3xh
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stylaster gemmascens (Esper, 1790)"
 ]
}

 The dataset includes 97 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014732-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sp78i6
title: Occurrence Download

description: A dataset containing 25066 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mollusca Collection - Museu Nacional/UFRJ"
 ]
}

 The dataset includes 25066 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011172-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.