cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7981664
title: Patient explicit consideration of tradeoffs in decision making about rectal cancer treatment: benefits for decision process and quality of life

description: <b>Introduction:</b> Patient preferences are often not discussed in treatment decisions in oncology. We introduced an online values clarification method (VCM) to help newly diagnosed rectal cancer patients participate in shared decision making about short-course preoperative radiotherapy. <b>Material and Methods:</b> We offered a link to the VCM to a subset of consecutive patients before the pretreatment consultation with the radiation oncologist. Consultations were audiotaped and coded for expressions of patient preferences. Patients were asked to complete pre- and post-consultation questionnaires. Questionnaires assessed values clarity, decision regret and presence and impact of fecal incontinence and sexual problems. <b>Results:</b> Of 135 patients who had their consultation audiotaped and completed questionnaires, 35 received and accessed the VCM-link. Patients in the VCM-group slightly more often expressed preferences during consultations. Questionnaire data showed that patients in the VCM-group did not differ in how clear their values were, but experienced lower regret and less impact of treatment harms at 6 months follow-up; differences were non-significant but in the same direction at 12 months. <b>Discussion:</b> This is the first study to assess the effect of an adaptive conjoint analysis-based VCM on actual patient-clinician communication, and long-term decision regret and impact of treatment harms. Being explicitly invited to think about treatment benefits and harms seems to help patients to live with treatment consequences.
DOI: 10.6084/m9.figshare.7981661
title: Pedestrian crashes at priority-controlled junctions, roundabouts, and signalized junctions: The UK case study

description: <b>Objectives:</b> Over half of pedestrians killed and seriously injured in Great Britain in 2015 were involved in crashes at junctions. This study investigates the nature of these crashes. <b>Methods:</b> A study was conducted into pedestrian casualty crashes at priority controlled junctions, roundabouts and signalised junctions in England between 2005 and 2015 using information from the UK STATS19 accident database, the UK National Travel Survey and the UK National Census. Consideration was given to coding frequencies of contributory factors, exposure (in terms of miles walked or driven) as well as age, gender and the resident deprivation index of the road users involved. <b>Results and Conclusions:</b> In terms of indicative blame, the coding frequencies of subjectively determined pedestrian actions and behaviour factors which might have contributed to pedestrian casualty crashes were found to be between 1.6 and 2.8 times the frequencies of driver actions and behavioural factors. Substantial social gradients were found in pedestrian casualty rates per miles walked and in the driver involvement rates per mile driven with those from the most deprived quintile having higher rates. In addition, it was found that female pedestrians, aged 60 years and over, had higher pedestrian casualty rates, per billion miles walked, for all three junction types, when compared with males and females under the age of 60 years, apart from male pedestrians aged 16 years and younger at priority controlled junctions.
DOI: 10.6084/m9.figshare.7981664.v1
title: Patient explicit consideration of tradeoffs in decision making about rectal cancer treatment: benefits for decision process and quality of life

description: <b>Introduction:</b> Patient preferences are often not discussed in treatment decisions in oncology. We introduced an online values clarification method (VCM) to help newly diagnosed rectal cancer patients participate in shared decision making about short-course preoperative radiotherapy. <b>Material and Methods:</b> We offered a link to the VCM to a subset of consecutive patients before the pretreatment consultation with the radiation oncologist. Consultations were audiotaped and coded for expressions of patient preferences. Patients were asked to complete pre- and post-consultation questionnaires. Questionnaires assessed values clarity, decision regret and presence and impact of fecal incontinence and sexual problems. <b>Results:</b> Of 135 patients who had their consultation audiotaped and completed questionnaires, 35 received and accessed the VCM-link. Patients in the VCM-group slightly more often expressed preferences during consultations. Questionnaire data showed that patients in the VCM-group did not differ in how clear their values were, but experienced lower regret and less impact of treatment harms at 6 months follow-up; differences were non-significant but in the same direction at 12 months. <b>Discussion:</b> This is the first study to assess the effect of an adaptive conjoint analysis-based VCM on actual patient-clinician communication, and long-term decision regret and impact of treatment harms. Being explicitly invited to think about treatment benefits and harms seems to help patients to live with treatment consequences.
DOI: 10.6084/m9.figshare.7981661.v1
title: Pedestrian crashes at priority-controlled junctions, roundabouts, and signalized junctions: The UK case study

description: <b>Objectives:</b> Over half of pedestrians killed and seriously injured in Great Britain in 2015 were involved in crashes at junctions. This study investigates the nature of these crashes. <b>Methods:</b> A study was conducted into pedestrian casualty crashes at priority controlled junctions, roundabouts and signalised junctions in England between 2005 and 2015 using information from the UK STATS19 accident database, the UK National Travel Survey and the UK National Census. Consideration was given to coding frequencies of contributory factors, exposure (in terms of miles walked or driven) as well as age, gender and the resident deprivation index of the road users involved. <b>Results and Conclusions:</b> In terms of indicative blame, the coding frequencies of subjectively determined pedestrian actions and behaviour factors which might have contributed to pedestrian casualty crashes were found to be between 1.6 and 2.8 times the frequencies of driver actions and behavioural factors. Substantial social gradients were found in pedestrian casualty rates per miles walked and in the driver involvement rates per mile driven with those from the most deprived quintile having higher rates. In addition, it was found that female pedestrians, aged 60 years and over, had higher pedestrian casualty rates, per billion miles walked, for all three junction types, when compared with males and females under the age of 60 years, apart from male pedestrians aged 16 years and younger at priority controlled junctions.
DOI: 10.6084/m9.figshare.7981667.v2
title: An inter-laboratory evaluation of new multi-element reference materials for atmospheric particulate matter measurements

description: Eight institutes using 12 different instruments analyzed newly developed multi-element reference materials (RM) for atmospheric particulate matter (PM) measurements. These RM have the potential to fill a gap in the currently available quality assurance resources for element analysis of PM samples such as X-ray fluorescence and inductively-coupled plasma mass spectrometry. This study evaluates the performance of these new RM generated by the University of California, Davis. The methodological challenge was to determine the reference loadings on the RM. Gravimetry is the most robust method to determine the sample deposit mass but cannot be used for these RM because some solution components are volatile and result in unpredictable total mass loadings on the RM. Instead of using gravimetry, a single well-measured element, along with the assumption that the relative mass fractions in the solutions were maintained in the aerosol deposited on the filters, was used to determine the reference loadings on the RM. This assumption appears to be valid for most elements in the solutions; notable exceptions include volatile species such as chlorine and bromine. Results from the 12 different instruments in the inter-laboratory evaluation agreed very well with the reference loadings (adjusted <i>R</i><sup>2</sup> &gt; 0.9 and slope between 0.7 and 1.3) for 17 of the 28 elements. In many cases, one or two instruments did not meet the performance criteria, which points to individual instrument calibration problems. For the 11 elements that did not perform as well, development work continues, and this intercomparison helped identify and fix a source of contamination in the system used to create the RM. Copyright © 2019 American Association for Aerosol Research
DOI: 10.6084/m9.figshare.7981628
title: Supplemenentary data_Effect of Meditative Movement on affects and flow in experienced qigong practitioners

description: Supplementary data from PANAS, FSS and open questionnaires
DOI: 10.6084/m9.figshare.7981628.v1
title: Supplemenentary data_Effect of Meditative Movement on affects and flow in experienced qigong practitioners

description: Supplementary data from PANAS, FSS and open questionnaires
DOI: 10.6084/m9.figshare.7981592
title: Objective derivation of the morphology and staging of visual field loss associated with long-term vigabatrin therapy

description: <b>Video 1:</b> Video of the rolling median of the 78 modelled fields from the 87 individuals who had been exposed to vigabatrin and who had undertaken the Full Field 135 Point Test with the three zone age-corrected strategy. <br><b>Video 2:</b> Video of the rolling median of the 90 modelled fields from the 99 individuals who had been exposed to vigabatrin and who had undertaken the Central 30-2 Threshold Test.<br><b>Video 3:</b> Video of the rolling median of the 54 modelled fields from the 63 individuals who had been exposed to vigabatrin and who had undertaken the combined Full Field 135 Point Test with the three zone age-corrected strategy and the Central 30-2 Threshold Test.<br><b>Video 4:</b> Video of the rolling median of the 29 modelled fields from the 38 individuals with no exposure to vigabatrin and who had undertaken the combined Full Field 135 Point Test with the three zone age-corrected strategy and the Central 30-2 Threshold Test.<b><br></b><b>Disclosures</b><br> <b>Funding </b>None <b>Conflicts of interest</b> John M Wild, Phillip EM Smith and Carlo Knupp declare that they have no conflicts of interest. <b>Ethical approval </b>All procedures performed in studies involving human participants were in accordance with the 1964 Helsinki declaration and its later amendments or comparable ethical standards. The Local Research and Ethics Committee ruled that approval was not required for this study. The visual field assessments were considered to be part of normal good clinical practice. The visual fields were de-identified and so written informed consent was not required. <b>Data availability </b>The datasets generated and/or analysed during the current study are available from the corresponding author on reasonable request. <b>Copyright</b> This video is distributed under the terms of the Creative Commons Attribution Noncommerical Licence which permits any noncommerical use, distribution, and reproduction in any medium, provided the original author(s) and the source is credited.<br>
DOI: 10.6084/m9.figshare.7981547
title: Deep Learning based Banana Plant Detection and Counting for UAV collected High Resolution RGB Images

description: Images in the zip file are collected over a commercial banana farm of King Fruits International Co., Ltd., Thailand. The images are collected from DJI Phantom3 UAV, from 40, 50 and 60 meter flight altitude.<br>
DOI: 10.6084/m9.figshare.7981511
title: Raw data of the major BIAs contents in one Kilogram dry leaves in different germplasm lines at filling stag.xlsx

description: Supplementary tables from this study, including raw data of the major BIAs contents in one Kilogram dry leaves in different germplasm lines at filling stag.
DOI: 10.6084/m9.figshare.7981592.v2
title: Objective derivation of the morphology and staging of visual field loss associated with long-term vigabatrin therapy

description: <b>Video 1:</b> Video of the rolling median of the 78 modelled fields from the 87 individuals who had been exposed to vigabatrin and who had undertaken the Full Field 135 Point Test with the three zone age-corrected strategy. <br><b>Video 2:</b> Video of the rolling median of the 90 modelled fields from the 99 individuals who had been exposed to vigabatrin and who had undertaken the Central 30-2 Threshold Test.<br><b>Video 3:</b> Video of the rolling median of the 54 modelled fields from the 63 individuals who had been exposed to vigabatrin and who had undertaken the combined Full Field 135 Point Test with the three zone age-corrected strategy and the Central 30-2 Threshold Test.<br><b>Video 4:</b> Video of the rolling median of the 29 modelled fields from the 38 individuals with no exposure to vigabatrin and who had undertaken the combined Full Field 135 Point Test with the three zone age-corrected strategy and the Central 30-2 Threshold Test.<b><br></b><b>Disclosures</b><br> <b>Funding </b>None <b>Conflicts of interest</b> John M Wild, Phillip EM Smith and Carlo Knupp declare that they have no conflicts of interest. <b>Ethical approval </b>All procedures performed in studies involving human participants were in accordance with the 1964 Helsinki declaration and its later amendments or comparable ethical standards. The Local Research and Ethics Committee ruled that approval was not required for this study. The visual field assessments were considered to be part of normal good clinical practice. The visual fields were de-identified and so written informed consent was not required. <b>Data availability </b>The datasets generated and/or analysed during the current study are available from the corresponding author on reasonable request. <b>Copyright</b> This video is distributed under the terms of the Creative Commons Attribution Noncommerical Licence which permits any noncommerical use, distribution, and reproduction in any medium, provided the original author(s) and the source is credited.<br>
DOI: 10.6084/m9.figshare.7981592.v1
title: Objective derivation of the morphology and staging of visual field loss associated with long-term vigabatrin therapy

description: <b>Disclosures</b><br> <b>Funding </b>None <b>Conflicts of interest</b> John M Wild, Phillip EM Smith and Carlo Knupp declare that they have no conflicts of interest. <b>Ethical approval </b>All procedures performed in studies involving human participants were in accordance with the 1964 Helsinki declaration and its later amendments or comparable ethical standards. The Local Research and Ethics Committee ruled that approval was not required for this study. The visual field assessments were considered to be part of normal good clinical practice. The visual fields were de-identified and so written informed consent was not required. <b>Data availability </b>The datasets generated and/or analysed during the current study are available from the corresponding author on reasonable request. <b>Copyright</b> This video is distributed under the terms of the Creative Commons Attribution Noncommerical Licence which permits any noncommerical use, distribution, and reproduction in any medium, provided the original author(s) and the source is credited.<br>
DOI: 10.6084/m9.figshare.7981511.v1
title: Raw data of the major BIAs contents in one Kilogram dry leaves in different germplasm lines at filling stag.xlsx

description: Supplementary tables from this study, including raw data of the major BIAs contents in one Kilogram dry leaves in different germplasm lines at filling stag.
DOI: 10.6084/m9.figshare.12874758
title: Additional file 1 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 1:Information of pooled barley BAC clone libraries and resulting sequences. Excel file (XLS 35 KB)
DOI: 10.6084/m9.figshare.12874785.v4
title: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley
DOI: 10.6084/m9.figshare.12874761.v1
title: Additional file 2 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 2:Name, lengh and map position of barley ESTs on chromosome 3H used for BAC clone selection and their homologous contigs from BAC sequencing. Excel file (XLS 103 KB)
DOI: 10.6084/m9.figshare.12874785.v3
title: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley
DOI: 10.6084/m9.figshare.12874758.v1
title: Additional file 1 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 1:Information of pooled barley BAC clone libraries and resulting sequences. Excel file (XLS 35 KB)
DOI: 10.6084/m9.figshare.12874767
title: Additional file 4 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 4:Rice genes (rap2 nucleotide sequences in each locus) showing blastn homology to barley conting sequences. Excel file (XLS 520 KB)
DOI: 10.6084/m9.figshare.12874773
title: Additional file 6 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 6:1,474 contigs showing significant blastn score with barley full length cDNAs. Excel file (XLS 242 KB)
DOI: 10.26180/5caed877a6d2d
title: Data used in "Endogenous Transaction Costs in International Trade"

description: The dataset includes all data used to produce the results reported in the various tables of the manuscript entitled "Endogenous Transaction Costs in International Trade" and the appendix that accompanies this manuscript.
DOI: 10.6084/m9.figshare.12874764
title: Additional file 3 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 3:Barley regions showing homology with rice genes (rap2 nucleotide sequences in each locus). Existence of full rice gene sequence on barley contig is confirmed by the start and end positions of rice gene on the respective contig sequence. Excel file (XLS 454 KB)
DOI: 10.6084/m9.figshare.12874773.v1
title: Additional file 6 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 6:1,474 contigs showing significant blastn score with barley full length cDNAs. Excel file (XLS 242 KB)
DOI: 10.6084/m9.figshare.12874776.v1
title: Additional file 7 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 7:EST sequences used for BAC clone selection. Multi-FASTA file. (TXT 209 KB)
DOI: 10.6084/m9.figshare.12874770.v1
title: Additional file 5 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 5:Brachypodium genes (Bd1.0CDS) showing blastn homology to barley conting sequences. Excel file (XLS 324 KB)
DOI: 10.6084/m9.figshare.12874776
title: Additional file 7 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 7:EST sequences used for BAC clone selection. Multi-FASTA file. (TXT 209 KB)
DOI: 10.6084/m9.figshare.7981433
title: judge

description: 1234
DOI: 10.6084/m9.figshare.12874767.v1
title: Additional file 4 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 4:Rice genes (rap2 nucleotide sequences in each locus) showing blastn homology to barley conting sequences. Excel file (XLS 520 KB)
DOI: 10.6084/m9.figshare.7981448.v1
title: EPT 268 cases with codebook_pd partial.xlsx

description: Test upload
DOI: 10.6084/m9.figshare.7981433.v2
title: judge

description: 1234
DOI: 10.6084/m9.figshare.12874761
title: Additional file 2 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 2:Name, lengh and map position of barley ESTs on chromosome 3H used for BAC clone selection and their homologous contigs from BAC sequencing. Excel file (XLS 103 KB)
DOI: 10.6084/m9.figshare.12874764.v1
title: Additional file 3 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 3:Barley regions showing homology with rice genes (rap2 nucleotide sequences in each locus). Existence of full rice gene sequence on barley contig is confirmed by the start and end positions of rice gene on the respective contig sequence. Excel file (XLS 454 KB)
DOI: 10.6084/m9.figshare.12874785.v5
title: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley
DOI: 10.6084/m9.figshare.12874770
title: Additional file 5 of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file 5:Brachypodium genes (Bd1.0CDS) showing blastn homology to barley conting sequences. Excel file (XLS 324 KB)
DOI: 10.6084/m9.figshare.12874785.v8
title: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley
DOI: 10.6084/m9.figshare.12874785.v7
title: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley
DOI: 10.6084/m9.figshare.12874785.v9
title: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley
DOI: 10.6084/m9.figshare.12874785.v6
title: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley

description: Additional file of 454 sequencing of pooled BAC clones on chromosome 3H of barley
DOI: 10.6084/m9.figshare.7981214
title: Additional file 3: of Transcriptional changes in response to ketamine ester-analogs SN 35210 and SN 35563 in the rat brain

description: DEGs in Venn diagram. Lists of DEGs found in all Venn diagram subsets, showing unique and shared genes between control (vehicle) and drug treatments. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.7981214.v1
title: Additional file 3: of Transcriptional changes in response to ketamine ester-analogs SN 35210 and SN 35563 in the rat brain

description: DEGs in Venn diagram. Lists of DEGs found in all Venn diagram subsets, showing unique and shared genes between control (vehicle) and drug treatments. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.7981205
title: Additional file 2: of Transcriptional changes in response to ketamine ester-analogs SN 35210 and SN 35563 in the rat brain

description: Detailed gene lists. Excel spreadsheet with worksheets showing all differentially expressed genes found in each sample and within the false detection rate cut-off used. (XLSX 591 kb)
DOI: 10.6084/m9.figshare.7981196
title: Additional file 1: of Challenges of determining frequency and magnitudes of explosive eruptions even with an unprecedented stratigraphy

description: Granulometry data and thickness measurements for the five best-exposed and correlated tephra fall units used for the tephra dispersion modelling. Data collected as part of this study are in red. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.7981205.v1
title: Additional file 2: of Transcriptional changes in response to ketamine ester-analogs SN 35210 and SN 35563 in the rat brain

description: Detailed gene lists. Excel spreadsheet with worksheets showing all differentially expressed genes found in each sample and within the false detection rate cut-off used. (XLSX 591 kb)
DOI: 10.6084/m9.figshare.7981196.v1
title: Additional file 1: of Challenges of determining frequency and magnitudes of explosive eruptions even with an unprecedented stratigraphy

description: Granulometry data and thickness measurements for the five best-exposed and correlated tephra fall units used for the tephra dispersion modelling. Data collected as part of this study are in red. (XLSX 41 kb)