cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/1e406df005a0d139e1c78d3bb6828992
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 6 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-6 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.19698883
title: Full-length 16S rRNA gene analysis using long-read nanopore sequencing

description: Nanopore sequencing reads of 16S rRNA gene amplicons from the 10-species mock bacterial community (ATCC MSA-1000).
DOI: 10.6084/m9.figshare.19698883.v3
title: Full-length 16S rRNA gene analysis using long-read nanopore sequencing

description: Nanopore sequencing reads of 16S rRNA gene amplicons from the 10-species mock bacterial community (ATCC MSA-1000).
DOI: 10.6084/m9.figshare.19698883.v2
title: Full-length 16S rRNA gene analysis using long-read nanopore sequencing

description: Nanopore sequencing reads of 16S rRNA gene amplicons from the 10-species mock bacterial community (ATCC MSA-1000).
DOI: 10.6084/m9.figshare.19682844
title: Protobothrops mucrosquamatus and prey size comparison

description: Body mass of the <em>Protobothrops mucrosquamatus</em> was bigger in urban comparing with the forest. In addition, we found one urban individual dead due to foraging oversized prey. Different diet between urban and forest suggested that the urban snakes may force to challenge dangerous prey due to low diversity of prey.
DOI: 10.6084/m9.figshare.19682844.v1
title: Protobothrops mucrosquamatus and prey size comparison

description: Body mass of the <em>Protobothrops mucrosquamatus</em> was bigger in urban comparing with the forest. In addition, we found one urban individual dead due to foraging oversized prey. Different diet between urban and forest suggested that the urban snakes may force to challenge dangerous prey due to low diversity of prey.
DOI: 10.5066/p9blzpjt
title: Geophysical data from the unnamed lake at the National Crude Oil Spill Fate and Natural Attenuation Research Site, Bemidji, MN (ver. 3.0, May 2022)

description: The National Crude Oil Spill Fate and Natural Attenuation Research Site is located near Bemidji, MN, USA. A high-pressure oil pipeline ruptured in 1979 releasing ~1.7 million liters of light crude oil, which sprayed over an area of ~6500 square meters and collected in topographic depressions. Approximately 75% of the spilled oil was recovered. Much of the remainder reached the water table, where it is distributed into three residual oil bodies (the north, middle, and south oil pools). Groundwater flows east-northeast toward a small lake roughly 300 m downgradient from the original spill site. Secondary reactions of sediments with byproducts from anaerobic degradation of the oil plumes cause increases in total dissolved solids, which are transported in groundwater and raise the electrical conductivity of the groundwater above background levels, presenting a potential monitoring target for electrical geophysical methods. This data release contains electromagnetic induction (EMI), ground penetrating radar (GPR), electrical resistivity tomography (ERT), and specific conductance (SpC) data collected over and within the lake where it is believed high SpC groundwater associated with degradation of the oil plume is discharging. Direct measurements of lake sediment specific conductance and temperature, as well as pore water specific conductance, are also included. The current release (ver. 3.0) contains data from 2018, 2019, and 2021. Previous versions of this data release contained only data from 2018 (version 1.0), and data from 2018 and 2019 (version 2.0). The interested user can contact Neil Terry (nterry@usgs.gov) or the USGS Hydrogeophysics Branch to obtain a copy of the original release. A revision history is also included on this root page.
DOI: 10.6073/pasta/38104a2de0d3c231a3efb65033e2eb19
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 6 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-6. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-6 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/e229d1bf9b122fe1eadccd208cecde8b
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 6 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-6. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-6 site. This is an ONGOING dataset.
DOI: 10.5517/ccdc.csd.cc2bbvh1
title: CCDC 2155383: Experimental Crystal Structure Determination

description: Related Article: Zhuofeng Xie, Yuyang Dai, Manling Bao, Zhongtao Feng, Wenjuan Wang, Chunmeng Liu, Xinping Wang, Yuanting Su|2022|Chem.Commun.|58|5391|doi:10.1039/D2CC01254E
DOI: 10.5517/ccdc.csd.cc2bbvk3
title: CCDC 2155385: Experimental Crystal Structure Determination

description: Related Article: Zhuofeng Xie, Yuyang Dai, Manling Bao, Zhongtao Feng, Wenjuan Wang, Chunmeng Liu, Xinping Wang, Yuanting Su|2022|Chem.Commun.|58|5391|doi:10.1039/D2CC01254E
DOI: 10.6073/pasta/500e6d1bd631022c2eeff8186616d6cd
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 6 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-6 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.5517/ccdc.csd.cc29wz5c
title: CCDC 2142043: Experimental Crystal Structure Determination

description: Related Article: Yanchen Huo, Xiang Hu, Jixing Wang, Hongfan Hu, Xiaochao Shi|2022|New J.Chem.|46|8277|doi:10.1039/D2NJ00707J
DOI: 10.5517/ccdc.csd.cc29xc7v
title: CCDC 2142417: Experimental Crystal Structure Determination

description: Related Article: Lu Xi, Chao-Yi Jin, Hong-Wei Song, Xiao-Tong Wang, Li-Cun Li, Jean-Pascal Sutter|2022|Dalton Trans.|51|6955|doi:10.1039/D2DT00220E
DOI: 10.5517/ccdc.csd.cc29xc8w
title: CCDC 2142418: Experimental Crystal Structure Determination

description: Related Article: Lu Xi, Chao-Yi Jin, Hong-Wei Song, Xiao-Tong Wang, Li-Cun Li, Jean-Pascal Sutter|2022|Dalton Trans.|51|6955|doi:10.1039/D2DT00220E
DOI: 10.5517/ccdc.csd.cc29xc9x
title: CCDC 2142419: Experimental Crystal Structure Determination

description: Related Article: Lu Xi, Chao-Yi Jin, Hong-Wei Song, Xiao-Tong Wang, Li-Cun Li, Jean-Pascal Sutter|2022|Dalton Trans.|51|6955|doi:10.1039/D2DT00220E
DOI: 10.6073/pasta/a1040c545ed344397a89ddc42932edf6
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.19633404.v10
title: Code snippet suggestions for exploratory programming - User study

description: This dataset contains participant notebooks, scripts for analysis, study instruments and pilot study results.
DOI: 10.6084/m9.figshare.15170085
title: Critical Role of Oroclinal Bending in the Tectonic Evolution of the Antarctic Peninsula

description: specimen direction
DOI: 10.6084/m9.figshare.15170085.v3
title: Critical Role of Oroclinal Bending in the Tectonic Evolution of the Antarctic Peninsula

description: specimen direction
DOI: 10.6084/m9.figshare.15170085.v2
title: Opening of the Drake Passage/Scotia Sea Gateway induced abrupt cooling in the South Atlantic Ocean during ~40-36 Ma: new evidence from a high-resolution paleomagnetic reconstruction

description: specimen direction
DOI: 10.6073/pasta/45cf52391a8355c61ac51d0874b7132d
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-7 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/4e24feba91f7aae8938c40a5b8a71edf
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-7 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/cec56c707834450e9f5285aa1adf4f9a
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-7. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-7 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/21f496d9c360deef604ced9306ac977b
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-7. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-7 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/2b68f414447dc4cb87952a8c655e69d3
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-7 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/76eebcfd95a39bd10afffa80064ca05f
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 8 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.19633404.v11
title: Code snippet suggestions for exploratory programming - User study

description: This dataset contains participant notebooks, scripts for analysis, study instruments and pilot study results.
DOI: 10.13139/olcf/1865904
title: April 2020 Darshan counters from the Summit supercomputer

description: This dataset is the Darshan counters collected from the Summit supercomputer in a month of April 2020. 1. Description of methods used for collection/generation of data: Job submitted on Summit HPC system when completed successfully and has made I/O calls (captured by Darshan tool) writes a Darshan log file on alpine filesystem. One job can have multiple `jsrun` commands and Darshan will generate separate logs each log corresponding to an `jsrun` command, so a job can have one or more Darshan logs associated with it. 2. Methods for processing the data: To process the data, we first use `darshan-util` tool to parse the Darshan logs. Then we restructure the logs and merge data from multiple Darshan logs if they belong to the same Summit job.
DOI: 10.6073/pasta/7936d3fd5c4af9e79fc462876e528d14
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 8 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-8 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.5061/dryad.5rm6d/2
title: Supplementary tables S2 - S4_  and figure S1 - S7

description: Supplementary Table S2. Summary of the taxonomic and geographic sampling of fungal genera for this study.

Supplementary Table S3. Specificity indices for Trebouxia OTUs represented by ≥ 10 sequences per OTU, based on fungal genera included in this study.

Supplementary Table S4. Summary of OTUs inferred using the ABGD detection program (Puillandre et al. 2012) represented by at least ten sequences and/or including sequences generated from UTEX and SAG cultures (UTEX and SAG cultures are shown in bold). Cultures and/or provisional names from previous studies, geographic distributions, and associated mycobiont hosts are reported. Other lichen mycobiont genera associated with Trebouxia OTUs were inferred using a BLAST search against the GenBank Nucleotide sequence database (searched 15 Nov 2014), where sequences with ≥ 98% similarity to a representative sequence from each OTU were assumed to belong to the OTU. The majority of OTUs were largely consistent with 97.5% sequence similarity clusters, with the exception of OTU ‘I01’, which was split into ten OTUs at 97.5%. The 97.5% sequence similarity clusters for OTUs ‘I01’ are shown parenthetically for each mycobiont host.

Supplementary Figure S1. Relative proportion of Trebouxia OTUs associated with sampled fungal genera

Supplementary Figure S2. ITS gene tree for a subset of specimens in the T. arboricola/gigantea group inferred using the program RAxML.

Supplementary Figure S3. Mitochondrial COXII gene tree for a subset of specimens in the T. arboricola/gigantea group inferred using the program RAxML.

Supplementary Figure S4. Chloroplast rbcL gene tree for a subset of specimens in the T. arboricola/gigantea group inferred using the program RAxML.

Supplementary Figure S5. Chloroplast psbJ-L gene tree for a subset of specimens in the T. arboricola/gigantea group inferred using the program RAxML. Ambiguous regions of the alignment were removed using the program Gblocks.

Supplementary Figure S6. Chloroplast topology for a subset of specimens in the T. arboricola/gigantea group inferred from concatenated rbcL and psJ-L alignments using the program RAxML.

Supplementary Figure S7. A “total evidence” phylogeny for the T. arboricola/gigantea, inferred from concatenated nuclear ITS, mitochondrial COXII, and the chloroplast markers rbcL and psbJ-L using the program RAxML.
DOI: 10.5061/dryad.6546d/1
title: Experiments 1-6

description: Data from experiments 1-7, including longevity and son (M) and daughter (F) production.
DOI: 10.5061/dryad.66hc0/10
title: Maximum Likelihood tree of the combined nuclear dataset
DOI: 10.5061/dryad.66hc0/11
title: Maximum Parsimony strict consensus tree of the combined nuclear dataset
DOI: 10.5061/dryad.66hc0/12
title: Maximum Parsimony most-parsimonious trees of the combined nuclear dataset
DOI: 10.5061/dryad.66hc0/13
title: Maximum Parsimony bootstrapping trees of the combined nuclear dataset
DOI: 10.5061/dryad.66hc0/14
title: Bayesian tree of the combined plastid dataset
DOI: 10.5061/dryad.66hc0/6
title: Maximum Parsimony strict consensus tree of the tribe-wide nrITS dataset
DOI: 10.5061/dryad.66hc0/7
title: Maximum Parsimony bootstrapping trees of the tribe-wide nrITS dataset
DOI: 10.5061/dryad.66hc0/8
title: Maximum Parsimony most-parsimonious trees of the tribe-wide nrITS dataset
DOI: 10.5061/dryad.66hc0/9
title: Bayesian tree of the combined nuclear dataset
DOI: 10.5061/dryad.82fk7/1
title: Data for Buzatto et al 2015

description: All morphological measurements used in the quantitative genetic analyses (paternal half-sibling design) described in our manuscript.