cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/p6977sbwkm.1
title: Proteomic analysis of Acremonium chrysogenum WT (ATCC 11550) and HY (RNCM F-4081D) strains

description: Acremonium chrysogenum is the only industrial producer of the antibiotic cephalosporin C (CPC), the starting substance for manufacturing of cephalosporins of the 1st-5th generation. Producing strains used in industry are significantly improved through multiple rounds of random mutagenesis; however, the molecular basis for such changes is not fully understood. In this study, we attempt to elucidate key changes that occurred at proteome level in the CSI program of A. chrysogenum HY (RNCM F-4081D), with CPC production 300-fold higher than in parental A. chrysogenum WT strain (ATCC 11550). It was revealed that more than 30% of proteins are differentially expressed at different stages of fermentation. Among identified changes, the most critical appears to be upreg-ulation of beta-lactam biosynthetic enzymes. The data also suggest shifts in the primary metabolic pathways, providing building blocks for beta-lactam synthesis reactions, in-cluding the amino acid precursors cysteine, valine, and substrate for expandase reaction, α-ketoglutarate. Changes in energy flows in favor of targeted metabolic pathway were also revealed. High-yielding CPC production appears to be accompanied by oxidative stress, as key oxidative stress enzymes are upregulated. Our findings are consistent with previous investigations describing changes that occurred in other fungal strains improved by classical methods. This points to general key changes leading to high-yield production. A deeper understanding of these features is important for predicting the target effects of improved industrial producers of secondary metabolites.
Here we provide data on the proteomic analysis performed: Table 1: Data after proteomic analysis by LC-MS/MS of samples isolated from A. chrysogenum HY and WT strains after 72, 96 and 120 h of fermentation; Table 2: emPAI of individual proteins within proteomes, normalized to GAPDH; Table 3: Hierarchical cluster analysis of DEPs in A. chrysogenum WT and HY strains; Table 4: Enrichment analysis of overrepresented GO terms in DEPs in A. chrysogenum strains (HY vs. WT); Table 5: Hierarchical cluster analysis of DEPs in A. chrysogenum WT during fermentation and in A. chrysogenum HY during fermentation; Table 6: Enrichment analysis of overrepresented GO terms in DEPs in A. chrysogenum WT (96/72 and 120/72 h) and in A. chrysogenum HY (96/72 and 120/72 h).
DOI: 10.5517/cc4h2th
title: CCDC 133666: Experimental Crystal Structure Determination

description: Related Article: S.Kawata, S.Kitagawa, M.Enomoto, H.Kumagai, M.Katada|1998|Inorg.Chim.Acta|283|80|doi:10.1016/S0020-1693(98)00223-0
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.x4a84w
title: Occurrence Download

description: A dataset containing 125863 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Robinia pseudoacacia L.",
 "Year 2010-2020"
 ]
}

 The dataset includes 125863 records from 1674 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003882-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wa777v
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-69.2395 -36.69191,-68.00903 -36.69191,-68.00903 -35.97208,-69.2395 -35.97208,-69.2395 -36.69191))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 131 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135307-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85cum8
title: Occurrence Download

description: A dataset containing 311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ornithonyssus bacoti (Hirst, 1913))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 311 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045051-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhlqtx
title: Occurrence Download

description: A dataset containing 8898 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ZFMK Heteroptera collection"
 ]
}

 The dataset includes 8898 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006852-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmhxky
title: Occurrence Download

description: A dataset containing 303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ranunculus marschlinsii Steud.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 303 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085417-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m0d5a2
title: Occurrence Download

description: A dataset containing 1695 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Opuntia robusta H.L.Wendl. ex Pfeiff."
 ]
}

 The dataset includes 1695 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041171-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6ddey
title: Occurrence Download

description: A dataset containing 2674 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Centralisation des observations floristiques dans le cadre du SINP - Observations floristiques - plateforme SINP régionale SILENE PACA",
 "TaxonKey is Brachypodium distachyon (L.) P.Beauv."
 ]
}

 The dataset includes 2674 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136360-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jejw9
title: Occurrence Download

description: A dataset containing 1246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((-0.01350 40.67294,7.01459 40.67294,7.01459 43.48544,-0.01350 43.48544,-0.01350 40.67294))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Senecio inaequidens DC."
 ]
}

 The dataset includes 1246 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085423-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qneauh
title: Occurrence Download

description: A dataset containing 937 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "License is CC-BY 4.0",
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Yucca filifera Chabaud",
 "TaxonKey is Yucca L."
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 937 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041172-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxfceq
title: Occurrence Download

description: A dataset containing 201245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Abies alba Mill."
 ]
}

 The dataset includes 201245 records from 741 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085418-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rz5q9x
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "Geometry POLYGON((-1.23594 47.62667,11.26650 47.62667,11.26650 52.62545,-1.23594 52.62545,-1.23594 47.62667))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lophocolea semiteres (Lehm.) Mitt."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0114521-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vm1mq5
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Opuntia ×cochinera Griffiths"
 ]
}

 The dataset includes 86 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041174-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6akef
title: Occurrence Download

description: A dataset containing 117716 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphaerodactylidae"
 ]
}

 The dataset includes 117716 records from 557 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085451-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jeduan
title: Occurrence Download

description: A dataset containing 144865 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "MediaType is Image",
 "PublishingOrg is c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f",
 "TaxonKey is Tracheophyta",
 "Year 1000-2012"
 ]
}

 The dataset includes 144865 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096792-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.trwqtj
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Colombia",
 "Country is Mexico",
 "Country is Venezuela (Bolivarian Republic of)"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Justicia laevilinguis (Nees) Lindau",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 166 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041177-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75z28x
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ranunculus integerrimus (Julin) Borch.-Kolb",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 68 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085471-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfzv5m
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xanthodes albago (Fabricius, 1794)"
 ]
}

 The dataset includes 147 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096781-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fne0vf
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Ambystoma flavipiperatum Dixon, 1963"
 ]
}

 The dataset includes 249 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041178-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2akyb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Geometry POLYGON((118.44719 8.87427,118.7113 9.19088,119.00237 9.83175,118.0506 10.09051,118.03052 9.80405,117.73736 9.57976,118.44719 8.87427))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pardaliparus amabilis (Sharpe, 1877)",
 "Year 2010-2024"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085457-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8d3m22
title: Occurrence Download

description: A dataset containing 2034 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus patula Schiede ex Schltdl. & Cham."
 ]
}

 The dataset includes 2034 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096791-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1156312.10fu
title: SH1156312.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1156313.10fu
title: SH1156313.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1156315.10fu
title: SH1156315.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1156317.10fu
title: SH1156317.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1156318.10fu
title: SH1156318.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1156319.10fu
title: SH1156319.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.74ay4n
title: Occurrence Download

description: A dataset containing 5173200 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-92.24121 28.92163,-94.43848 28.69059,-96.37207 27.29369,-96.37207 25.87899,-97.0752 24.20689,-97.0752 22.67485,-96.63574 21.53485,-96.1084 20.13847,-94.87793 18.97903,-93.73535 18.64625,-92.41699 18.89589,-91.27441 19.55979,-90.74707 20.7972,-90.04395 21.61658,-87.6709 22.02455,-86.17676 21.61658,-85.8252 20.63278,-87.14355 19.06212,-87.23145 17.89511,-87.31934 16.80454,-84.24316 16.80454,-84.41895 21.20746,-85.20996 22.26876,-83.8916 23.40276,-81.60645 23.64452,-81.16699 24.76678,-82.22168 25.40358,-83.0127 27.05913,-83.45215 28.69059,-84.15527 29.45873,-85.64941 29.22889,-88.28613 29.61167,-88.37402 28.61346,-92.24121 28.92163))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5173200 records from 613 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009914-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79b9ie
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lilium hansonii Leichtlin ex D.D.T.Moore"
 ]
}

 The dataset includes 70 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007188-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111323943
title: Cuneiform Tablet

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.
DOI: 10.15468/dl.nfshua
title: Occurrence Download

description: A dataset containing 1144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "TaxonKey is Amazilia tzacatl (de la Llave, 1833)"
 ]
}

 The dataset includes 1144 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009919-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.