cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11307872.v1
title: MOESM2 of 3-Dimensional facial expression recognition in human using multi-points warping

description: Additional file 2: Table S2.Â Raw three-dimensional digitized data for Bosphorus dataset expression group.
DOI: 10.6084/m9.figshare.11307800
title: Susceptibility to diarrhea is related to hemodynamic markers of sympathetic activation in the general population

description: <b>Objectives:</b> Functional gastrointestinal (GI) symptoms, such as IBS (irritable bowel syndrome), have been suggested to be associated with autonomic neuropathy. We therefore examined associations between hemodynamic indices of autonomic control, functional GI symptoms and stress in a population-based cohort. <b>Methods and materials:</b> The study included 2094 participants of the Malmö Offspring Study (mean age 40.6 ± 13.8 years, 53.9% women). 509 (24.3%) reported having GI symptoms the last 2 weeks, without having organic GI disease, and 347 subjects (16.6%) reported IBS. Office and ambulatory 24-h systolic blood pressure (SBP), diastolic blood pressure (DBP) and heart rate were measured. Associations between hemodynamic parameters and abdominal pain, diarrhea, constipation, bloating and flatulence, vomiting and nausea and psychological well-being according to the visual analog scale for IBS (VAS-IBS), and stress, were performed by Spearman’s correlation test and linear regression models. <b>Results:</b> Subjects who reported GI symptoms had lower office supine and standing DBP and lower 24 h SBP and DBP compared with those without GI symptoms. Regarding specific symptoms, diarrhea was correlated with 24-h measurements of SBP (rs = 0.197), DBP (rs = 0.173) and heart rate (rs = 0.134). Subjects with the most severe diarrhea had higher 24-h SBP (125.2 vs. 119.0 mmHg; <i>p</i> = .038), DBP (74.0 vs. 69.0 mmHg; <i>p</i> = .033) and heart rate (74.5 vs 71.1 beats/minute; <i>p</i> = .048), after adjustments for confounders, compared to the other. There were no associations between other GI symptoms, IBS, stress and hemodynamic alterations. <b>Conclusion:</b> Functional diarrhea was associated with hemodynamic indices of sympathetic activation, supporting a possible role of the autonomic nervous system in diarrhea.
DOI: 10.6084/m9.figshare.11307800.v1
title: Susceptibility to diarrhea is related to hemodynamic markers of sympathetic activation in the general population

description: <b>Objectives:</b> Functional gastrointestinal (GI) symptoms, such as IBS (irritable bowel syndrome), have been suggested to be associated with autonomic neuropathy. We therefore examined associations between hemodynamic indices of autonomic control, functional GI symptoms and stress in a population-based cohort. <b>Methods and materials:</b> The study included 2094 participants of the Malmö Offspring Study (mean age 40.6 ± 13.8 years, 53.9% women). 509 (24.3%) reported having GI symptoms the last 2 weeks, without having organic GI disease, and 347 subjects (16.6%) reported IBS. Office and ambulatory 24-h systolic blood pressure (SBP), diastolic blood pressure (DBP) and heart rate were measured. Associations between hemodynamic parameters and abdominal pain, diarrhea, constipation, bloating and flatulence, vomiting and nausea and psychological well-being according to the visual analog scale for IBS (VAS-IBS), and stress, were performed by Spearman’s correlation test and linear regression models. <b>Results:</b> Subjects who reported GI symptoms had lower office supine and standing DBP and lower 24 h SBP and DBP compared with those without GI symptoms. Regarding specific symptoms, diarrhea was correlated with 24-h measurements of SBP (rs = 0.197), DBP (rs = 0.173) and heart rate (rs = 0.134). Subjects with the most severe diarrhea had higher 24-h SBP (125.2 vs. 119.0 mmHg; <i>p</i> = .038), DBP (74.0 vs. 69.0 mmHg; <i>p</i> = .033) and heart rate (74.5 vs 71.1 beats/minute; <i>p</i> = .048), after adjustments for confounders, compared to the other. There were no associations between other GI symptoms, IBS, stress and hemodynamic alterations. <b>Conclusion:</b> Functional diarrhea was associated with hemodynamic indices of sympathetic activation, supporting a possible role of the autonomic nervous system in diarrhea.
DOI: 10.6084/m9.figshare.11307602
title: Forecasting stock prices using a hybrid deep learning model integrating attention mechanism, multi-layer perceptron, and bidirectional long-short term memory neural network

description: The data set integrates the following: (a) historical prices of stocks; (b) technical indicators of stocks closing prices; (c) natural resources (gold, silver, and oil) prices and (d) historical data of the Google index.
DOI: 10.6084/m9.figshare.11307581
title: data for MS-AFSC-Nonadditive effects of decomposing mixed foliar litter on the release of several metallic elements in a Masson pine forest.xlsx

description: Non-additive effects on several metal elements release from the mixing foliar litter decomposition in Masson pine forest
DOI: 10.6084/m9.figshare.11307596
title: Time series of onshore, longshore currents, and current direction from the HR model forced by the GEM, CFSv2, and NNM winds, and MR model with the NNM winds versus ADCP measurement from July 1 to September 30, 2014.

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11307581.v1
title: data for MS-AFSC-Non-additive effects on several metal elements release from the mixing foliar litter decomposition in Masson pine forest.xlsx

description: Non-additive effects on several metal elements release from the mixing foliar litter decomposition in Masson pine forest
DOI: 10.6084/m9.figshare.11307596.v1
title: Time series of onshore, longshore currents, and current direction from the HR model forced by the GEM, CFSv2, and NNM winds, and MR model with the NNM winds versus ADCP measurement from July 1 to September 30, 2014.

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11307572
title: Revisit dynamics of summer circulation in Lake Michigan

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11307602.v2
title: Forecasting stock prices using a hybrid deep learning model integrating attention mechanism, multi-layer perceptron, and bidirectional long-short term memory neural network

description: The data set integrates the following: (a) historical prices of stocks; (b) technical indicators of stocks closing prices; (c) natural resources (gold, silver, and oil) prices and (d) historical data of the Google index.
DOI: 10.6084/m9.figshare.11307572.v1
title: Revisit dynamics of summer circulation in Lake Michigan

description: This work revisited the dynamics of deep-lake gyres and coastal circulation for Lake Michigan by using observations and modeling system. Few works had been done to comprehensively discuss the wind-, density-, and wave-driven circulation using a high-resolution, wave-current coupled model. The formation, dynamics and connection of the offshore and nearshore circulation in this representative large lake of the Great Lakes system was given detailed investigations in this study.
DOI: 10.6084/m9.figshare.11307563
title: Comparing High Throughput Sequencing and Real Time qPCR for Characterizing Entomopathogenic Nematode Biogeography

description: Entomopathogenic nematodes (EPNs) are widely distributed in soils across all continents except Antarctica. Assessing the EPN community structure in an ecoregion can help reveal their biological control potential against important crop pests. Common methods for detecting EPNs in soil samples include baiting with sentinel insects, direct observation of extracted nematodes, or use of species-specific primer-probe combinations using qPCR. Less well studied is the use of high throughput sequencing (HTS), which has tremendous potential to characterize soil communities of EPNs and natural enemies of EPNs. Here, for the first time, we compared qPCR and HTS to characterize EPN food webs. The frequency and abundance of 10 EPN species and 13 organisms associated with EPNs from 50 orchard and natural area sites in two ecoregions of Portugal were evaluated using qPCR tools, and results were published in 2019. We applied a HTS approach to analyze frozen DNA samples from 36 sites in that study. Universal primers targeting ITS1 were used for nematode detection.
DOI: 10.6084/m9.figshare.11307551
title: Gene database of Pseudomonas protegens Pf-5

description: <i>Pseudomonas protegens</i> Pf-5 is an important biocontrol bacterium present in multitude of environmental surfaces. A Gram-negative bacterium with a versatile metabolism, <i>P. protegens</i> Pf-5 is emerging as an important biotechnology workhorse, particularly in the area of recovering useful metals from metal ores or electron scrap materials. Herein, the annotated genome sequence of <i>P. protegens</i> Pf-5 (NCBI Reference Sequence: NC_004129.6) was parsed by an in-house MATLAB algorithm to yield a gene database comprising all gene names and their associated gene function and gene sequence. The database should find use in a variety of metabolic engineering and biotechnology applications seeking to demonstrate novel use of the bacterium in environmental remediation and crop protection through recombinant DNA technology.<br><br>
DOI: 10.6084/m9.figshare.11307533
title: CMKLR1 deficiency attenuates androgen-induced lipid accumulation in mice

description: Supplementary data<br>
DOI: 10.6084/m9.figshare.11307533.v1
title: CMKLR1 deficiency attenuates androgen-induced lipid accumulation in mice

description: Supplementary data<br>
DOI: 10.6084/m9.figshare.11307563.v1
title: Comparing High Throughput Sequencing and Real Time qPCR for Characterizing Entomopathogenic Nematode Biogeography

description: Entomopathogenic nematodes (EPNs) are widely distributed in soils across all continents except Antarctica. Assessing the EPN community structure in an ecoregion can help reveal their biological control potential against important crop pests. Common methods for detecting EPNs in soil samples include baiting with sentinel insects, direct observation of extracted nematodes, or use of species-specific primer-probe combinations using qPCR. Less well studied is the use of high throughput sequencing (HTS), which has tremendous potential to characterize soil communities of EPNs and natural enemies of EPNs. Here, for the first time, we compared qPCR and HTS to characterize EPN food webs. The frequency and abundance of 10 EPN species and 13 organisms associated with EPNs from 50 orchard and natural area sites in two ecoregions of Portugal were evaluated using qPCR tools, and results were published in 2019. We applied a HTS approach to analyze frozen DNA samples from 36 sites in that study. Universal primers targeting ITS1 were used for nematode detection.
DOI: 10.6084/m9.figshare.11307563.v3
title: Comparing High Throughput Sequencing and Real Time qPCR for Characterizing Entomopathogenic Nematode Biogeography

description: Entomopathogenic nematodes (EPNs) are widely distributed in soils across all continents except Antarctica. Assessing the EPN community structure in an ecoregion can help reveal their biological control potential against important crop pests. Common methods for detecting EPNs in soil samples include baiting with sentinel insects, direct observation of extracted nematodes, or use of species-specific primer-probe combinations using qPCR. Less well studied is the use of high throughput sequencing (HTS), which has tremendous potential to characterize soil communities of EPNs and natural enemies of EPNs. Here, for the first time, we compared qPCR and HTS to characterize EPN food webs. The frequency and abundance of 10 EPN species and 13 organisms associated with EPNs from 50 orchard and natural area sites in two ecoregions of Portugal were evaluated using qPCR tools, and results were published in 2019. We applied a HTS approach to analyze frozen DNA samples from 36 sites in that study. Universal primers targeting ITS1 were used for nematode detection.
DOI: 10.17608/k6.auckland.11307497
title: SUPPLEMENT: Using genetics to plan black rat (Rattus rattus) management in Fernando de Noronha archipelago, Brazil (microsatellite data)

description: Supplementary microsatellite data accompanying our Fernando de Noronha archipelago rat invasion paper: <i><b>Using genetics to plan black rat (Rattus rattus) management in Fernando de Noronha archipelago, Brazil</b> </i> <br>
DOI: 10.6084/m9.figshare.11307563.v2
title: Comparing High Throughput Sequencing and Real Time qPCR for Characterizing Entomopathogenic Nematode Biogeography

description: Entomopathogenic nematodes (EPNs) are widely distributed in soils across all continents except Antarctica. Assessing the EPN community structure in an ecoregion can help reveal their biological control potential against important crop pests. Common methods for detecting EPNs in soil samples include baiting with sentinel insects, direct observation of extracted nematodes, or use of species-specific primer-probe combinations using qPCR. Less well studied is the use of high throughput sequencing (HTS), which has tremendous potential to characterize soil communities of EPNs and natural enemies of EPNs. Here, for the first time, we compared qPCR and HTS to characterize EPN food webs. The frequency and abundance of 10 EPN species and 13 organisms associated with EPNs from 50 orchard and natural area sites in two ecoregions of Portugal were evaluated using qPCR tools, and results were published in 2019. We applied a HTS approach to analyze frozen DNA samples from 36 sites in that study. Universal primers targeting ITS1 were used for nematode detection.
DOI: 10.17608/k6.auckland.11307497.v1
title: SUPPLEMENT: Using genetics to plan black rat (Rattus rattus) management in Fernando de Noronha archipelago, Brazil (microsatellite data)

description: Supplementary microsatellite data accompanying our Fernando de Noronha archipelago rat invasion paper: <i><b>Using genetics to plan black rat (Rattus rattus) management in Fernando de Noronha archipelago, Brazil</b> </i> <br>
DOI: 10.6084/m9.figshare.11307404
title: “Taphonomy: Dead and fossilized”: A new board game designed to teach college undergraduate students about the process of fossilization

description: Incorporating games in teaching can help students retain material and become innovative problem solvers through engagement and enjoyment. Here we describe a new board game, “Taphonomy: Dead and Fossilized,” and its use as an active learning tool (material available at doi: 10.18738/T8/NQV2CU). The educational objective is to teach the player about taphonomy and fossilization, while the gameplay objective is to preserve and recover the best fossil collection. Through competitive gameplay, students learn how chemical, physical, and environmental factors, as well as physiology and discovery biases can influence an organism’s preservation and collection potential. The game is modeled after an Early Jurassic fossil deposit for scientific accuracy and relevance. The game was incorporated in undergraduate classroom activities in 20 colleges and universities across the United States. Survey results show that students and teachers were overwhelmingly positive about the game, stating that it was fun and helped them learn or strengthen their knowledge of fossilization. When analyzed statistically, we find that students’ self-reported learning outcomes and opinions vary most significantly with college year, major, ethnicity, and race. White students and geoscience or STEM majors reported the highest levels of learning and enjoyment, with minorities and non-STEM majors responding less favorably. We suggest this game is most advantageous for use in upper-level paleontology classrooms, although it is still beneficial at lower levels. It is critical to use this game as part of a larger lesson plan and tailor it to fit the needs of an individual classroom. Modifications for time and class size, as well as follow-up discussion questions, are included.
DOI: 10.6084/m9.figshare.11307404.v1
title: “Taphonomy: Dead and fossilized”: A new board game designed to teach college undergraduate students about the process of fossilization

description: Incorporating games in teaching can help students retain material and become innovative problem solvers through engagement and enjoyment. Here we describe a new board game, “Taphonomy: Dead and Fossilized,” and its use as an active learning tool (material available at doi: 10.18738/T8/NQV2CU). The educational objective is to teach the player about taphonomy and fossilization, while the gameplay objective is to preserve and recover the best fossil collection. Through competitive gameplay, students learn how chemical, physical, and environmental factors, as well as physiology and discovery biases can influence an organism’s preservation and collection potential. The game is modeled after an Early Jurassic fossil deposit for scientific accuracy and relevance. The game was incorporated in undergraduate classroom activities in 20 colleges and universities across the United States. Survey results show that students and teachers were overwhelmingly positive about the game, stating that it was fun and helped them learn or strengthen their knowledge of fossilization. When analyzed statistically, we find that students’ self-reported learning outcomes and opinions vary most significantly with college year, major, ethnicity, and race. White students and geoscience or STEM majors reported the highest levels of learning and enjoyment, with minorities and non-STEM majors responding less favorably. We suggest this game is most advantageous for use in upper-level paleontology classrooms, although it is still beneficial at lower levels. It is critical to use this game as part of a larger lesson plan and tailor it to fit the needs of an individual classroom. Modifications for time and class size, as well as follow-up discussion questions, are included.
DOI: 10.6084/m9.figshare.11307389
title: The role of a multi-jurisdictional organization in developing ecosystem-based management for fisheries in the Great Lakes basin

description: One of the mandated charges to the Great Lakes Fishery Commission is to facilitate the coordination of Great Lakes fishery management across jurisdictions. To do this, the Great Lakes Fishery Commission organized annual lake committee meetings among Great Lake fishery professionals since 1964. Our objective was to describe the role of the Great Lakes Fishery Commission in facilitating communication among fishery jurisdictions that fueled the development of ecosystem-based management principles in the basin. Meeting minutes from lake committee meetings and publications from the Great Lakes Fishery Commission-facilitated Salmonid Community of Oligotrophic Lakes workshop were coded based on 12 a priori ecosystem-based management principles. Meeting and workshop attendance data were analyzed through a bipartite network analysis (organizations connected to meetings) to determine if attendance at meetings were grouped, or clustered, within the fishery governance network. No significant clusters were detected, demonstrating that during 1970-75 fishery professionals in Great Lakes were cooperative in nature – in contrast to the prior half century where little cross-jurisdictional management was reported. Our analyses based on meeting attendance and coded discussions at the meetings demonstrated that three ecosystem-based management perspectives were discussed prior to 1972 (ecological integrity, hierarchical context, and humans embedded in nature) whereas discussions at lake committee meetings from 1972-74 and the Salmonid Community of Oligotrophic Lakes workshop influenced discussions about data collection, ecosystem boundaries, and hierarchical context at lake committee meetings in 1975. The Great Lakes Fishery Commission played a bridging role in facilitating communication among Great Lakes jurisdictions. These annual meetings were becoming a forum for professionals to collaboratively discuss fishery management issues, thereby advancing ecosystem-based management principles throughout the basin. Ultimately discussions at lake committee meetings helped contribute to the Great Lakes Fishery Commission and allied fishery management organizations agreeing to manage Great Lakes fisheries under ecosystem-based management through the ratification of A Joint Strategic Plan for Management of Great Lakes Fisheries in 1981.
DOI: 10.6084/m9.figshare.11307401
title: Bayesian Methods for Planning Accelerated Repeated Measures Degradation Tests

description: Accelerated repeated measures degradation tests are often used to assess product or component reliability when there would be few or even no failures during a traditional life test. Such tests are used to estimate the failure-time distributions of highly reliable items in applications where it is possible to take repeated measures of some appropriate degradation measure. When engineers have valid prior information about failure mechanisms, it is important that such information be used in inference and test planning. Bayesian methods provide a vehicle for doing this. This article describes methods for selecting a Bayesian repeated measures accelerated degradation test plan when the degradation and acceleration model is linear in the parameters. A Bayesian criterion based on estimation precision of the failure-time quantile at use conditions is selected for finding optimum test plans. We use a large-sample approximation for the posterior distribution to simplify the planning criterion. The general equivalence theorem is used to check for global optimality of the optimum test plan. We also discuss how to find a compromise test plan that satisfies practical constraints while still providing good statistical properties.