cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ugehuk
title: Occurrence Download

description: A dataset containing 5183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is DAO Herbarium Type Specimens"
 ]
}

 The dataset includes 5183 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043306-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwnp3m
title: Occurrence Download

description: A dataset containing 218687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.76947 36.62861,-5.53934 35.41504,3.0943 37.94619,4.72395 39.92256,3.64092 42.83308,3.233 43.6326,-6.68355 44.11803,-9.70013 43.90999,-9.76947 36.62861))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Euphorbia L."
 ]
}

 The dataset includes 218687 records from 368 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028971-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2b2nr
title: Occurrence Download

description: A dataset containing 2961 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calotriton asper (Dugès, 1852)"
 ]
}

 The dataset includes 2961 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004894-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ocxes
title: Occurrence Download

description: A dataset containing 5302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-105.095558 39.462152,-105.095558 39.401268,-105.031837 39.401268,-105.031837 39.462152,-105.095558 39.462152))"
 ]
}

 The dataset includes 5302 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004895-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqmr3q
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oedicladium serricuspe (Broth.) Nog. & Z.Iwats.",
 "Year 1970-2023"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034310-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wegmxz
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "GadmGid is ESP.4_1",
 "Geometry POLYGON((-18.41988 32.13604,13.41988 32.13604,13.41988 44.86396,-18.41988 44.86396,-18.41988 32.13604))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lythrum baeticum Gonz.Albo"
 ]
}

 The dataset includes 82 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000038-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xegfj
title: Occurrence Download

description: A dataset containing 17829 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-122.471466 47.526474,-122.507171 47.485656,-122.522277 47.455022,-122.531890 47.408573,-122.537384 47.393701,-122.525024 47.373244,-122.546997 47.344406,-122.546997 47.344406,-122.493438 47.321137,-122.393188 47.357431,-122.393188 47.357431,-122.360229 47.394630,-122.360229 47.394630,-122.444000 47.513490,-122.444000 47.513490,-122.471466 47.526474))",
 "HasGeospatialIssue is false",
 "DatasetKey is EOD – eBird Observation Dataset"
 ]
}

 The dataset includes 17829 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004895-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3r6fn
title: Occurrence Download

description: A dataset containing 70208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Europe)",
 "Country is one of (Morocco, Spain, Portugal)",
 "TaxonKey is Ononis L."
 ]
}

 The dataset includes 70208 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163351-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9iv5b
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aegla affinis Schmitt, 1942"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004895-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3aqd7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rhododendron guangnanense R.C.Fang"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028984-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.okvino
title: Occurrence Download

description: A dataset containing 274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thorius boreas Hanken & Wake, 1994",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 274 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004895-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11092489
title: Healthy and cancer individuals from Long-read sequencing reveals aberrant fragmentation patterns and origins of circulating DNA in cancer

description: Oxford Nanopore sequencing data from 61 samples described in manuscript "Long-read sequencing reveals aberrant fragmentation patterns and origins of circulating DNA in cancer"

All data are aligned to UCSC analysisSet hg38 (https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/analysisSet/), and use 0-based coordinates.

Level 2: In order to provide combined fragmentation and methylation information, Biscuit was used to create “epiBED” files (see Methods). epiBED files contain each read on a separate line, with each DNA methylation call on the read. epiBED files can be used for combined methylation/fragmentomic analysis, and are compatible with the CelFiE-ISH software that was used for cell of origin deconvolution.

Creation of Biscuit EpiBED files:Biscuit (https://huishenlab.github.io/biscuit/) v. 1.4.1-dev  was used with the command “biscuit epiread -M -b 0 -m 0 -a 0 -5 0 -3 0 -y 0.9 -L 1000000 hg38.analysisSet.fa”, where the reference is the same UCSC reference genome used for alignment. Files are available in the Zenodo repository listed in Data Availability.

Level 3: DNA methylation BED files. BED files created by modkit (see Methods) provide one line for each CpG covered, and can be used for basic DNA methylation analysis.Creation of modkit BED files:BED files were created using modkit (https://github.com/nanoporetech/modkit) v. 0.1.5 with the command “modkit pileup --cpg --combine-strands --ignore h --filter-threshold 0.9 --bedgraph".
DOI: 10.15468/dl.2nummg
title: Occurrence Download

description: A dataset containing 5183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is DAO Herbarium Type Specimens"
 ]
}

 The dataset includes 5183 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043307-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4e5m4b
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Monotropastrum sciaphilum (Andres) G.D.Wallace"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028974-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7htex0
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drosophila suzukii (Matsumura, 1931)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 41 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004895-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2pdm5
title: Occurrence Download

description: A dataset containing 184 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Septaria lineata (Lamarck, 1816)"
 ]
}

 The dataset includes 184 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034301-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7itry6
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 1000-2017",
 "TaxonKey is Euphorbia pulcherrima Willd. ex Klotzsch"
 ]
}

 The dataset includes 374 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004895-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38725p
title: Occurrence Download

description: A dataset containing 2039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección de Saurios Museo de La Salle Bogotá (MLS)"
 ]
}

 The dataset includes 2039 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043323-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l40dux
title: Occurrence Download

description: A dataset containing 785 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gallus varius (Shaw, 1798)"
 ]
}

 The dataset includes 785 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004895-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehygza
title: Occurrence Download

description: A dataset containing 3663 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asplanchna priodonta Gosse, 1850"
 ]
}

 The dataset includes 3663 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034306-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfmmps
title: Occurrence Download

description: A dataset containing 680 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylocharis leucotis leucotis"
 ]
}

 The dataset includes 680 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004896-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4samq
title: Occurrence Download

description: A dataset containing 8363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-76.07 4.36,-74.89393 4.38312,-74.87464 4.83607,-74.86494 5.22508,-76.07 5.22,-76.07 4.36))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 8363 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163347-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phl4dq
title: Occurrence Download

description: A dataset containing 43359 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senecio viscosus L."
 ]
}

 The dataset includes 43359 records from 236 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004896-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5se86
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Aristida riograndensis B.M.A.Severo & I.I.Boldrini"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163354-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ap4nhw
title: Occurrence Download

description: A dataset containing 301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambystoma tigrinum mavortium Baird, 1850",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 301 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004896-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9hus5m
title: Occurrence Download

description: A dataset containing 4268 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Free-living marine Nematodes from Ali, Rada Tilly and El Limite sandy beaches (Chubut, Argentina) 2006."
 ]
}

 The dataset includes 4268 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163361-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qahyf8
title: Occurrence Download

description: A dataset containing 56121 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Burundi"
 ]
}

 The dataset includes 56121 records from 172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004896-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3g7ppg
title: Occurrence Download

description: A dataset containing 16998526 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Setophaga fusca (Statius Müller, 1776), Piranga olivacea (J.F.Gmelin, 1789), Strix nebulosa J.R.Forster, 1772, Cyanocitta cristata (Linnaeus, 1758))"
 ]
}

 The dataset includes 16998526 records from 469 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163362-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pp6efe
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhynchonycteris naso (Wied-Neuwied, 1820)"
 ]
}

 The dataset includes 35 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0247212-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqt3e5
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neoregelia doeringiana L.B.Sm."
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046423-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6htq7k
title: Occurrence Download

description: A dataset containing 9946 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Réunion",
 "GadmGid is REU",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, VU)",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 9946 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0255834-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxjyfu
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acerodon jubatus (Eschscholtz, 1831)"
 ]
}

 The dataset includes 165 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005393-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2xk9w
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Archaeognatha",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262251-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.st8p75
title: Occurrence Download

description: A dataset containing 377 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ledebouria luteola Jessop"
 ]
}

 The dataset includes 377 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005401-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8b9gjx
title: Occurrence Download

description: A dataset containing 21266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "TaxonKey is Lonicera japonica Thunb."
 ]
}

 The dataset includes 21266 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238876-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wk7tvc
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.32575 -34.76292,-63.35418 -34.76292,-63.35418 -30.37690,-74.32575 -30.37690,-74.32575 -34.76292))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Puya chilensis Molina"
 ]
}

 The dataset's 1 records were derived from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263975-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkwrx4
title: Occurrence Download

description: A dataset containing 713 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Macroinvertebrates distribution in Madeira Island streams (Portugal)"
 ]
}

 The dataset includes 713 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245927-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwqq23
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Diversity and distribution of multipurpose species in Benin",
 "TaxonKey is Hyptis suaveolens (L.) Poit."
 ]
}

 The dataset includes 62 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243412-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttyt94
title: Occurrence Download

description: A dataset listing the 12746 species recorded in GBIF matching the query:
{
 "Country" : [
 "is Liberia"
 ]
}

 The dataset's 12746 records were derived from 557 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0255837-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.armcny
title: Occurrence Download

description: A dataset containing 335329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((142.71723 -10.7109,145.12893 -15.68988,149.75783 -22.92497,152.55851 -26.27023,155.86487 -24.40311,148.66867 -12.81141,144.85664 -9.23276,142.71723 -10.7109))",
 "OccurrenceStatus is Present",
 "Year 2020-2023"
 ]
}

 The dataset includes 335329 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243410-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aadvyc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spirostreptida",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262270-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.