cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6850232
title: Mouse sperm acrosome exocytosis

description: CD1 male mice (10 to 12 weeks old) were maintained in a 12-hour light and 12-hour dark cycle, at 23°C and 55±15% humidity, with water being always accessible. Animals were euthanized and cauda epididymal sperm collection followed. Cauda epididymis was cut at multiple sites, placed in 500 µl of non-capacitating medium (NC) and incubated at 37°C for 15 min. Supernatant was collected and pre-incubation with 100 nM SiR-actin in NC of recovered sperm took place for 10 min. Once dyed, sperm were once more incubated for at 37°C for 60 min in capacitating (CAP) conditions. NC used was a modified TYH medium (119.3 mM NaCl, 4.7 mM KCl, 1.71 mM CaCl<sub>2</sub>•2H<sub>2</sub>O, 1.2 mM KH<sub>2</sub>PO<sub>4</sub>, 1.2 mM MgSO<sub>4•</sub>7H<sub>2</sub>O, 0.51 mM sodium pyruvate, 5.56 mM glucose, 20 mM HEPES and 10 µg/ml gentamicin). For CAP conditions, 5 mg/ml BSA and 15 mM NaHCO<sub>3</sub> were added. Sperm were immobilized in coverslips treated with concanavalin-A (1 mg/ml). The imaging chamber was loaded with NC with 0.5 µM FM4-64 and 100 nM SiR-actin. Dye excitation was provided by 561 nm and 640 nm lasers. Using a NanoImager-S microscope (ONI, Oxford Nanoimaging Ltd) equipped with a 100X, 1.4 NA, oil-immersion objective (Olympus), 100 frames were acquired every 0.5 min for a total of 20 min, with a pixel size of 117 nm. Experimental procedures were approved by the Bioethics Committee of the Biotechnology Institute of the National Autonomous University of Mexico.
description: The files "Sperm Head Acrosome Reaction induction.tif" and "Sperm Head Fenestration site.tif" correspond to 20 minute time lapses of a sperm head undergoing acrosome exocytosis induction, where each frame corresponds to the average of 100 frames captured every 30 seconds. The files "Sperm Head Fenestration site pre-induction.tif" and "Sperm Head Fenestration site post-induction.tif" correspond to 100 frames acquired at a given moment before and after acrosome exocytosis induction, respectively.
DOI: 10.5281/zenodo.6850231
title: Mouse sperm acrosome exocytosis

description: CD1 male mice (10 to 12 weeks old) were maintained in a 12-hour light and 12-hour dark cycle, at 23°C and 55±15% humidity, with water being always accessible. Animals were euthanized and cauda epididymal sperm collection followed. Cauda epididymis was cut at multiple sites, placed in 500 µl of non-capacitating medium (NC) and incubated at 37°C for 15 min. Supernatant was collected and pre-incubation with 100 nM SiR-actin in NC of recovered sperm took place for 10 min. Once dyed, sperm were once more incubated for at 37°C for 60 min in capacitating (CAP) conditions. NC used was a modified TYH medium (119.3 mM NaCl, 4.7 mM KCl, 1.71 mM CaCl<sub>2</sub>•2H<sub>2</sub>O, 1.2 mM KH<sub>2</sub>PO<sub>4</sub>, 1.2 mM MgSO<sub>4•</sub>7H<sub>2</sub>O, 0.51 mM sodium pyruvate, 5.56 mM glucose, 20 mM HEPES and 10 µg/ml gentamicin). For CAP conditions, 5 mg/ml BSA and 15 mM NaHCO<sub>3</sub> were added. Sperm were immobilized in coverslips treated with concanavalin-A (1 mg/ml). The imaging chamber was loaded with NC with 0.5 µM FM4-64 and 100 nM SiR-actin. Dye excitation was provided by 561 nm and 640 nm lasers. Using a NanoImager-S microscope (ONI, Oxford Nanoimaging Ltd) equipped with a 100X, 1.4 NA, oil-immersion objective (Olympus), 100 frames were acquired every 0.5 min for a total of 20 min, with a pixel size of 117 nm. Experimental procedures were approved by the Bioethics Committee of the Biotechnology Institute of the National Autonomous University of Mexico.
description: The files "Sperm Head Acrosome Reaction induction.tif" and "Sperm Head Fenestration site.tif" correspond to 20 minute time lapses of a sperm head undergoing acrosome exocytosis induction, where each frame corresponds to the average of 100 frames captured every 30 seconds. The files "Sperm Head Fenestration site pre-induction.tif" and "Sperm Head Fenestration site post-induction.tif" correspond to 100 frames acquired at a given moment before and after acrosome exocytosis induction, respectively.
DOI: 10.6084/m9.figshare.20445801
title: Section 5.1 supplementary material from Modelling the anomalous shock response of titanium diboride

description: Software (codes) and data to generate results and figures of Section 5.1
DOI: 10.6084/m9.figshare.20445801.v1
title: Section 5.1 supplementary material from Modelling the anomalous shock response of titanium diboride

description: Software (codes) and data to generate results and figures of Section 5.1
DOI: 10.6084/m9.figshare.20445804
title: Section 5.2 supplementary material from Modelling the anomalous shock response of titanium diboride

description: Software (codes) and data to generate results and figures of Section 5.2
DOI: 10.6084/m9.figshare.20445804.v1
title: Section 5.2 supplementary material from Modelling the anomalous shock response of titanium diboride

description: Software (codes) and data to generate results and figures of Section 5.2
DOI: 10.6084/m9.figshare.20443182.v2
title: The Pandemic Experience Corpus II (DATE RANGE)

description: Description of new study files here
DOI: 10.34740/kaggle/dsv/4041941
title: BBC News
DOI: 10.34740/kaggle/ds/2394244
title: Would You Rather questions with human votes
DOI: 10.6084/m9.figshare.20409660
title: antivacunas

description: <strong>Resumen</strong> <strong>Introducción</strong> Es útil ver a los movimientos anti-vacunas a la luz de la psicología social, el psicoanálisis y los conocimientos <br>
DOI: 10.6084/m9.figshare.20409660.v2
title: antivacunas

description: <strong>Resumen</strong> <strong>Introducción</strong> Es útil ver a los movimientos anti-vacunas a la luz de la psicología social, el psicoanálisis y los conocimientos <br>
DOI: 10.6084/m9.figshare.20409660.v1
title: Movimientos antivacunas COVID-19 y la unidad mental de las masas

description: <strong>Resumen</strong> <strong>Introducción</strong> Es útil ver a los movimientos anti-vacunas a la luz de la psicología social, el psicoanálisis y los conocimientos biomédicos actuales. El estudio de la formación, de los tipos, de las motivaciones y otras características de las <em>masas psicológicas</em> nos puede orientar en la creación de estrategias efectivas de vacunación, importante en el contexto de la COVID-19. <br> <strong>Discusión</strong> Lo más relevante que se analiza aquí es la muy probable validez en la actualidad de las ideas de del medico y psicólogo francés y del psicoanalista vienes en el entendimiento de las masas anti-vacunas. También se encuentran ideas útiles de estos dos autores que sirven para complementar y mejorar las estrategias que se usan en la actualidad para promover la inmunización y al final se dan algunas sugerencias para estas estrategias. <br>
DOI: 10.6084/m9.figshare.20445798
title: Neisseria species as pathobionts in bronchiectasis lipid-metabome data

description: Little is known about Neisseria species within the bronchiectasis microbiome. Using a bedside to bench approach combining human cohorts, next generation sequencing and systems biology in human and mouse models, we demonstrate that bacteriomes in bronchiectasis, characterized by Neisseria, relate to poor clinical outcomes including exacerbations. Cultivable Neisseria subflava from bronchiectasis promotes loss of epithelial integrity and induces inflammation in primary human epithelium ex vivo. In vivo mouse models of Neisseria subflava infection demonstrate transcriptomic immuno-inflammatory functional gene clusters and pulmonary inflammation through the metabo-lipidome. Systemic change from mouse metabo-lipidomes were validated in Neisseria-dominant bronchiectasis, and were comparable to Pseudomonas-dominant disease, an established bronchiectasis pathogen. Metagenomic surveillance of Neisseria across other respiratory diseases reveal broader significance and, assessment of the home environment in bronchiectasis suggests potential environmental sources of exposure. In summary, we report Neisseria species as pathobionts in bronchiectasis allowing for improved risk-stratification in this high-risk group. <br>
DOI: 10.26183/na5y-xs64
title:  EMNIST: an extension of MNIST to handwritten letters

description: The MNIST dataset has become a standard benchmark for learning, classification and computer vision systems. Contributing to its widespread adoption are the understandable and intuitive nature of the task, its relatively small size and storage requirements and the accessibility and ease-of-use of the database itself. The MNIST database was derived from a larger dataset known as the NIST Special Database 19 which contains digits, uppercase and lowercase handwritten letters. This paper introduces a variant of the full NIST dataset, which we have called Extended MNIST (EMNIST), which follows the same conversion paradigm used to create the MNIST dataset. The result is a set of datasets that constitute a more challenging classification tasks involving letters and digits, and that shares the same image structure and parameters as the original MNIST task, allowing for direct compatibility with all existing classifiers and systems. Benchmark results are presented along with a validation of the conversion process through the comparison of the classification results on converted NIST digits and the MNIST digits.

A Read Me file describing the database is included in the available attachments.
Note: The available zip files are each > 500MB in size. Should these files become unavailable from the website provided, please contact Western Sydney University Library about this record.
DOI: 10.34740/kaggle/dsv/4042029
title: Polish-Ukrainian translations from Tatoeba
DOI: 10.5281/zenodo.6972638
title: Lagrangian Heavy Precipitation Events in convection-permitting Regional Climate Models over the Alps and in the Mediterranean

description: The csv datafile contains a set of heavy precipitation events identified in cpRCMs. Each of the entries represents an event and is described with detailed properties: 'Start Date [YYYYMMDD.HOUR/24]', 'Latitude [°]', 'Longitude [°]',<br> 'Duration [h]', 'Volume [km² h]', 'P99(pr) [mm h-1]',<br> 'P90(pr) [mm h-1]', 'P75(pr) [mm h-1]',<br> 'P50(pr) [mm h-1]', 'P25(pr) [mm h-1]',<br> 'P10(pr) [mm h-1]', 'Total Precipitation [m3]',<br> 'Maximum Precipitation [mm h-1$]',<br> 'Mean Precipitation [mm h-1$]', 'Direction [°]',<br> 'Distance Traveled [km]', 'Eccentricity [-]', 'Track Eccentricity [-]',<br> 'Mean Ellipsicity [-]', 'Track Ellipsicity [-]', 'Mean Major Angle [°]',<br> 'Track Major Angle [°]', 'Mean Major Axis [-]', 'Track Major Axis [-]',<br> 'My Orientation [°]', 'My Track Orientation [°]', 'max(Elevation) [m]',<br> 'min(Elevation) [m]', 'Start Year [YYYY]', 'Start Month [MM]',<br> 'LandFallSea [-]', 'Scenarios', 'Models', 'situations', 'Ensemble',<br> 'Speed [km h$^{-1}$]', 'Mean(Area) [km²]', 'orographic [-]',<br> 'Severity [-]', 'I/O OBS [-]', 'Region [-]', 'orographic1500 [-]',<br> 'orographic2000 [-]', 'orographic2500 [-]', 'orographic3000 [-]']
DOI: 10.5281/zenodo.6972637
title: Lagrangian Heavy Precipitation Events in convection-permitting Regional Climate Models over the Alps and in the Mediterranean

description: The csv datafile contains a set of heavy precipitation events identified in cpRCMs. Each of the entries represents an event and is described with detailed properties: 'Start Date [YYYYMMDD.HOUR/24]', 'Latitude [°]', 'Longitude [°]',<br> 'Duration [h]', 'Volume [km² h]', 'P99(pr) [mm h-1]',<br> 'P90(pr) [mm h-1]', 'P75(pr) [mm h-1]',<br> 'P50(pr) [mm h-1]', 'P25(pr) [mm h-1]',<br> 'P10(pr) [mm h-1]', 'Total Precipitation [m3]',<br> 'Maximum Precipitation [mm h-1$]',<br> 'Mean Precipitation [mm h-1$]', 'Direction [°]',<br> 'Distance Traveled [km]', 'Eccentricity [-]', 'Track Eccentricity [-]',<br> 'Mean Ellipsicity [-]', 'Track Ellipsicity [-]', 'Mean Major Angle [°]',<br> 'Track Major Angle [°]', 'Mean Major Axis [-]', 'Track Major Axis [-]',<br> 'My Orientation [°]', 'My Track Orientation [°]', 'max(Elevation) [m]',<br> 'min(Elevation) [m]', 'Start Year [YYYY]', 'Start Month [MM]',<br> 'LandFallSea [-]', 'Scenarios', 'Models', 'situations', 'Ensemble',<br> 'Speed [km h$^{-1}$]', 'Mean(Area) [km²]', 'orographic [-]',<br> 'Severity [-]', 'I/O OBS [-]', 'Region [-]', 'orographic1500 [-]',<br> 'orographic2000 [-]', 'orographic2500 [-]', 'orographic3000 [-]']
DOI: 10.5281/zenodo.6850357
title: Rotavirus viroplasms

description: Rotavirus cell infection and immunofluorescence. MA-104 Clone 1 cells (American Type Culture Collection; ATCC:CRL-2378.1; RRID:CVCL_3846) were cultured in DMEM-RS media supplemented with 5% fetal bovine serum at 37°C and 5% CO<sup>2</sup>. Prior to infection, Rhesus rotavirus (RRV) was activated with trypsin (10 μg/ml) for 30 min at 37°C. MA104 cells grown on glass coverslips were infected with RRV at a multiplicity of infection (MOI) of 1. Cells were fixed and prepared for immunofluorescence after six hours post-infection. Using a STORM imaging buffer mounting medium (1.5% glucose oxidase + 100 mM β-mercaptoethanol), the coverslips were mounted onto the center of glass slides. Rotavirus replication machinery imaging. Cell infection micrographs were provided kindly by Garcés and collaborators [1]. Imaging was carried out with an Olympus IX-81 inverted microscope in TIRF mode (Olympus, cellTIRFM illuminator), with an evanescence field depth of 200 nm. The objective lens used was an Olympus UApo N 100x 1.4 NA oil-immersion, with an additional 1.6x magnification lens. Excitation of Alexa-488 and Alexa-568 was provided by 488 nm and 568 nm lasers, respectively. Using a laser-modulation protocol, previously described in [1], an EMCCD camera (iXon 897, Model No: DU-897E-CS0-#BV; Andor) was used to acquire the images. Acquisition rate was set to 20 fps with a pixel size of 100 nm. For processing with MSSR, the algorithm parameters were set as follows: AMP = 5, PSF = 3, Order = 1, GPU parallel computing = enabled, temporal analysis = Mean (100 frames). 1. Garcés S, Y. et al. Nanoscale organization of rotavirus replication machineries. elife 8, e42906, (2019).
description: For all files, the red channel corresponds to the NSP2 protein, while the green channel corresponds to the viral protein depicted by each file name.
description: {"references": ["Garc\u00e9s S, Y. et al. Nanoscale organization of rotavirus replication machineries. elife 8, e42906, (2019)."]}
DOI: 10.5281/zenodo.6850356
title: Rotavirus viroplasms

description: Rotavirus cell infection and immunofluorescence. MA-104 Clone 1 cells (American Type Culture Collection; ATCC:CRL-2378.1; RRID:CVCL_3846) were cultured in DMEM-RS media supplemented with 5% fetal bovine serum at 37°C and 5% CO<sup>2</sup>. Prior to infection, Rhesus rotavirus (RRV) was activated with trypsin (10 μg/ml) for 30 min at 37°C. MA104 cells grown on glass coverslips were infected with RRV at a multiplicity of infection (MOI) of 1. Cells were fixed and prepared for immunofluorescence after six hours post-infection. Using a STORM imaging buffer mounting medium (1.5% glucose oxidase + 100 mM β-mercaptoethanol), the coverslips were mounted onto the center of glass slides. Rotavirus replication machinery imaging. Cell infection micrographs were provided kindly by Garcés and collaborators [1]. Imaging was carried out with an Olympus IX-81 inverted microscope in TIRF mode (Olympus, cellTIRFM illuminator), with an evanescence field depth of 200 nm. The objective lens used was an Olympus UApo N 100x 1.4 NA oil-immersion, with an additional 1.6x magnification lens. Excitation of Alexa-488 and Alexa-568 was provided by 488 nm and 568 nm lasers, respectively. Using a laser-modulation protocol, previously described in [1], an EMCCD camera (iXon 897, Model No: DU-897E-CS0-#BV; Andor) was used to acquire the images. Acquisition rate was set to 20 fps with a pixel size of 100 nm. For processing with MSSR, the algorithm parameters were set as follows: AMP = 5, PSF = 3, Order = 1, GPU parallel computing = enabled, temporal analysis = Mean (100 frames). 1. Garcés S, Y. et al. Nanoscale organization of rotavirus replication machineries. elife 8, e42906, (2019).
description: For all files, the red channel corresponds to the NSP2 protein, while the green channel corresponds to the viral protein depicted by each file name.
description: {"references": ["Garc\u00e9s S, Y. et al. Nanoscale organization of rotavirus replication machineries. elife 8, e42906, (2019)."]}
DOI: 10.6084/m9.figshare.20445849
title: dataset.sav

description: <strong>Participants:</strong> Data were collected from 19 to 26 March 2022. 1530 participants (636 men) from different colleges in the southern area of China were chosen using the convenience sampling method. <strong>Measures</strong> <em><strong>Subjective socioeconomic status (subjective SES).</strong></em> The subjective SES scale containing 1 item (Adler, Epel, Castellazzo, & Ickovics, 2000) was chosen to assess the level of subjective SES in this study. <em><strong>Life satisfaction. </strong></em>The Chinese version of the Satisfaction With Life Scale (Cai, Lin, Wu, Yan, & Huang, 2008) containing 5 items, translated from the Satisfaction With Life Scale (Pavot & Diener, 1993), was chosen to assess the level of life satisfaction in this study. <em><strong>Objective socioeconomic status (objective SES).</strong></em> The objective SES scale (Lu, 2002) containing 2 items was chosen to assess the level of objective SES in this study. <em><strong>Sense of control</strong></em><em>. </em>The Chinese version of the Sense of Control Scale (Li, 2012) containing 12 items, translated from the Sense of Control Scale (Lachman & Weaver, 1998), was chosen to assess the level of sense of control in this study. <em><strong>Meaning in life.</strong></em> The Chinese version of the Meaning in Life Questionnaire (Liu & Gan, 2014) containing 9 items, translated from the Meaning in Life Questionnaire (Michael & Steger, 2002), was chosen to assess the level of meaning in life.
DOI: 10.6084/m9.figshare.20445849.v1
title: dataset.sav

description: <strong>Participants:</strong> Data were collected from 19 to 26 March 2022. 1530 participants (636 men) from different colleges in the southern area of China were chosen using the convenience sampling method. <strong>Measures</strong> <em><strong>Subjective socioeconomic status (subjective SES).</strong></em> The subjective SES scale containing 1 item (Adler, Epel, Castellazzo, & Ickovics, 2000) was chosen to assess the level of subjective SES in this study. <em><strong>Life satisfaction. </strong></em>The Chinese version of the Satisfaction With Life Scale (Cai, Lin, Wu, Yan, & Huang, 2008) containing 5 items, translated from the Satisfaction With Life Scale (Pavot & Diener, 1993), was chosen to assess the level of life satisfaction in this study. <em><strong>Objective socioeconomic status (objective SES).</strong></em> The objective SES scale (Lu, 2002) containing 2 items was chosen to assess the level of objective SES in this study. <em><strong>Sense of control</strong></em><em>. </em>The Chinese version of the Sense of Control Scale (Li, 2012) containing 12 items, translated from the Sense of Control Scale (Lachman & Weaver, 1998), was chosen to assess the level of sense of control in this study. <em><strong>Meaning in life.</strong></em> The Chinese version of the Meaning in Life Questionnaire (Liu & Gan, 2014) containing 9 items, translated from the Meaning in Life Questionnaire (Michael & Steger, 2002), was chosen to assess the level of meaning in life.
DOI: 10.6084/m9.figshare.20411118
title: Lingtai temperature

description: Lingtai GDGTs-derived Land Temperature
DOI: 10.6084/m9.figshare.20411118.v2
title: Lingtai temperature

description: Lingtai GDGTs-derived Land Temperature
DOI: 10.6084/m9.figshare.20411118.v1
title: Lingtai temperature

description: Lingtai GDGTs-derived Land Temperature
DOI: 10.6084/m9.figshare.19312265
title: Metadata for Beta chain clonotypes

description: Metadata of the samples listed in the beta clonotype dataset, which can be found here: 10.6084/m9.figshare.19287512<br>
DOI: 10.6084/m9.figshare.19287506
title: Alpha Chain Clonotypes

description: These data is a collection of alpha chain colonotypes generated by using the tool MiXCR. The raw data used to generate these clonotypes originated in RNAseq of PBMCs taken from mice with colorectal caner and treated with anti-CTLA4.<br>
DOI: 10.6084/m9.figshare.19287512
title: Beta Chain Clonotypes

description: These data is a collection of beta chain colonotypes generated by using the tool MiXCR. The raw data used to generate these clonotypes originated in RNAseq of PBMCs taken from mice with colorectal caner and treated with anti-CTLA4.<br>
DOI: 10.6084/m9.figshare.19287512.v1
title: Beta Chain Clonotypes

description: These data is a collection of beta chain colonotypes generated by using the tool MiXCR. The raw data used to generate these clonotypes originated in RNAseq of PBMCs taken from mice with colorectal caner and treated with anti-CTLA4.<br>
DOI: 10.6084/m9.figshare.19312265.v1
title: Metadata for Beta chain clonotypes

description: Metadata of the samples listed in the beta clonotype dataset, which can be found here: 10.6084/m9.figshare.19287512<br>
DOI: 10.6084/m9.figshare.19287506.v1
title: Alpha Chain Clonotypes

description: These data is a collection of alpha chain colonotypes generated by using the tool MiXCR. The raw data used to generate these clonotypes originated in RNAseq of PBMCs taken from mice with colorectal caner and treated with anti-CTLA4.<br>
DOI: 10.5281/zenodo.6972675
title: NEP potential training and testing files for quasi-hexagonal-phase fullerene (QHPF) and face-centered-cubic bulk-phase fullerene (BPF)

description: This dataset contains the force-field parameter files and reference dataset described in the manuscript "Anisotropic and high thermal conductivity in monolayer quasi-hexagonal fullerene: A comparative study against bulk phase fullerene" (to be published). The format of nep.in file is compatible with the GPUMD 3.3.1 (https://github.com/brucefan1983/GPUMD/releases/tag/v3.3.1).
DOI: 10.5281/zenodo.6972674
title: NEP potential training and testing files for quasi-hexagonal-phase fullerene (QHPF) and face-centered-cubic bulk-phase fullerene (BPF)

description: This dataset contains the force-field parameter files and reference dataset described in the manuscript "Anisotropic and high thermal conductivity in monolayer quasi-hexagonal fullerene: A comparative study against bulk phase fullerene" (to be published). The format of nep.in file is compatible with the GPUMD 3.3.1 (https://github.com/brucefan1983/GPUMD/releases/tag/v3.3.1).
DOI: 10.5517/ccdc.csd.cc28bg9d
title: CCDC 2095423: Experimental Crystal Structure Determination

description: Related Article: Susumu Saito|2021|CSD Communication|||
description: Related Article: Taku Wakabayashi, Kenji Kamada, Keita Sekizawa, Shunsuke Sato, Takeshi Morikawa, Jieun Jung, Susumu Saito|2022|Organometallics|41|1865|doi:10.1021/acs.organomet.2c00171
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2952h2
title: CCDC 2120043: Experimental Crystal Structure Determination

description: Related Article: Tesfay G. Ashebr, Léo La Droitte, Xiao-Lei Li, Chen Zhao, Jinjiang Wu, Quan Zhou, Olivier Cador, Boris Le Guennic, Jinkui Tang|2022|Cryst.Growth Des.|22|5063|doi:10.1021/acs.cgd.2c00574
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.