cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/h0c-zm4-0nz
title: Rissoa lia (Monterosato, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4zw-1h0-12n
title: Mangelia unifasciata (Deshayes, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6xl-6lv-wk2
title: Oxychilus navarricus helveticus (Blum, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jld-v6b-0b1
title: Cerithiopsis tubercularis (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l88-22t-3yh
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/axe-k8m-tz0
title: Eulimella acicula (R. A. Philippi, 1836)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lf6-ege-2c6
title: Theba chudeaui (Germain, 1908)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.5kqqvq
title: Occurrence Download

description: A dataset containing 2598290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Repatriated is TRUE",
 "Country is Norway",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is null",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
 },
 {
 "not" : {
 "DatasetKey" : [
 "is EBCC Atlas of European Breeding Birds"
 ]
 }
 }
 ]
}

 The dataset includes 2598290 records from 1630 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001580-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f36h86
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tradescantia zebrina",
 "Country is Guatemala",
 "HasCoordinate is true"
 ]
}

 The dataset includes 72 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022889-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/p5g-gx5-0qp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3sl-zqd-h9a
title: Hungarites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4g3-yk7-b6t
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jt1-yv7-ejg
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l6s-fb1-80g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2de-jmd-qa4
title: Cladiscites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jjy-ms7-abe
title: †Echinocorys Leske, 1778

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.57680/asep.0638087
title: Dataset. The Projected Changes in the Surface Energy Budget of the CMIP5 and EURO-CORDEX Models. Are We Heading toward Wetter Growing Seasons in Central Europe?

description: The dataset contains processed climate models and observational data published in the journal article in the form of maps and figures. For maps the underlying data is supplied in the form of netCDF files including the sequence of Climate Data Operators (CDO) commands applied to obtain the final netCDF file. For figures the data is presented in the form tables. The original data processed within the study are either available from public repositories or owners of the FLUXNET stations: Global and regional climate model data are available via the ESGF data nodes (https://esgf.llnl.gov/nodes.html). ERA5-Land and E-OBS data are available via Climate Data Store of Copernicus Climate Change Services (https://cds.climate.copernicus.eu/#!/home). SARAH-2 data were obtained via the web user interface at the CM SAF (https://wui.cmsaf.eu/safira/action/viewHome?menuName=HOME_CMSAF_WUI). FLUXNET station data were collected by Alexander Graf from managers of individual FLUXNET sites.
DOI: 10.3535/alq-347-fnv
title: Halorites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sqk-hqn-dxy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c1b-fv8-2lb
title: †Nummulites javanus Verbeek, 1891

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c49-p1s-swy
title: Cyathopodium Verrill, 1868

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/te4-lsr-j48
title: †Orthoceras Bruguière, 1789

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.10696771
title: Fostering human-centered, augmented machine translation: analysing interactive post-editing (full dataset)

description: This dataset contains all the data collected in the PhD thesis "Fostering human-centered, augmented machine translation: analysing interactive post-editing". The dataset contains the source texts and the post-edited translations, the MTUX scores, the quality and productivity scores, as well as the pre-task perceptions of each of the 11 translators who collaborated on the two-week longitudinal study.
DOI: 10.5281/zenodo.10696772
title: Fostering human-centered, augmented machine translation: analysing interactive post-editing (full dataset)

description: This dataset contains all the data collected in the PhD thesis "Fostering human-centered, augmented machine translation: analysing interactive post-editing". The dataset contains the source texts and the post-edited translations, the MTUX scores, the quality and productivity scores, as well as the pre-task perceptions of each of the 11 translators who collaborated on the two-week longitudinal study.
DOI: 10.5281/zenodo.16745601
title: Synthetic Protein Interaction Dataset

description: Synthetic Protein Interaction Dataset

This dataset contains synthetic protein-protein interaction data designed for demonstration, benchmarking, and educational purposes in computational biology and bioinformatics. The data simulates interactions between proteins from multiple species, including mouse (Mus musculus), rat (Rattus norvegicus), and human (Homo sapiens).

File Format



Type: Tab-separated values (TSV)

Filename: synthetic_protein_interactions.tsv


Columns




Column
Description


source
Source protein identifier


target
Target protein identifier


source_genesymbol
Source gene symbol


target_genesymbol
Target gene symbol


is_directed
Indicates if the interaction is directed (1) or undirected (0)


is_stimulation
Indicates if the interaction is stimulatory (1) or not (0)


is_inhibition
Indicates if the interaction is inhibitory (1) or not (0)


consensus_direction
Consensus on directionality (1 for directed, 0 for undirected)


consensus_stimulation
Consensus on stimulation (1 for stimulatory, 0 for not)


consensus_inhibition
Consensus on inhibition (1 for inhibitory, 0 for not)


type
Type of interaction (e.g., binding, activation, phosphorylation, inhibition, ubiquitination)


ncbi_tax_id_source
NCBI taxonomy ID for the source protein


entity_type_source
Entity type for the source (e.g., protein)


ncbi_tax_id_target
NCBI taxonomy ID for the target protein


entity_type_target
Entity type for the target (e.g., protein)




Use Cases



Testing and benchmarking graph database import pipelines

Educational demonstrations of protein interaction networks

Development and validation of bioinformatics tools


Notes



All data is synthetic and does not represent real biological interactions.

The dataset includes a variety of interaction types and cross-species relationships.

Gene symbols and protein identifiers are modeled after real-world conventions but are randomly assigned.


Citation

If you use this dataset, please cite as:



Synthetic Protein Interaction Dataset (v1.0). Generated for demonstration and benchmarking purposes. [DOI 10.5281/zenodo.16745601]
DOI: 10.5281/zenodo.16902349
title: Synthetic Protein Interaction Dataset

description: Synthetic Protein Interaction Dataset

This dataset contains synthetic protein-protein interaction data designed for demonstration, benchmarking, and educational purposes in computational biology and bioinformatics. The data simulates interactions between proteins from multiple species, including mouse (Mus musculus), rat (Rattus norvegicus), and human (Homo sapiens).

File Format



Type: Tab-separated values (TSV)

Filename: synthetic_protein_interactions.tsv


Columns




Column
Description


source
Source protein identifier


target
Target protein identifier


source_genesymbol
Source gene symbol


target_genesymbol
Target gene symbol


is_directed
Indicates if the interaction is directed (1) or undirected (0)


is_stimulation
Indicates if the interaction is stimulatory (1) or not (0)


is_inhibition
Indicates if the interaction is inhibitory (1) or not (0)


consensus_direction
Consensus on directionality (1 for directed, 0 for undirected)


consensus_stimulation
Consensus on stimulation (1 for stimulatory, 0 for not)


consensus_inhibition
Consensus on inhibition (1 for inhibitory, 0 for not)


type
Type of interaction (e.g., binding, activation, phosphorylation, inhibition, ubiquitination)


ncbi_tax_id_source
NCBI taxonomy ID for the source protein


entity_type_source
Entity type for the source (e.g., protein)


ncbi_tax_id_target
NCBI taxonomy ID for the target protein


entity_type_target
Entity type for the target (e.g., protein)




Use Cases



Testing and benchmarking graph database import pipelines

Educational demonstrations of protein interaction networks

Development and validation of bioinformatics tools


Notes



All data is synthetic and does not represent real biological interactions.

The dataset includes a variety of interaction types and cross-species relationships.

Gene symbols and protein identifiers are modeled after real-world conventions but are randomly assigned.


Citation

If you use this dataset, please cite as:



Synthetic Protein Interaction Dataset (v1.0). Generated for demonstration and benchmarking purposes. [DOI 10.5281/zenodo.16745601]
DOI: 10.3535/lhz-tyx-7h6
title: Cladocora caespitosa (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/td2-3c1-57f
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3xh-hm3-h4t
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/azc-rjx-3fg
title: †Agathiceras sundaicum Haniel, 1915

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zbj-9ba-myy
title: Cassidulina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0jh-8pf-ned
title: †Sphaerulites Lamarck, 1819

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g3x-2j7-qkc
title: Hungarites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nc6-64c-akp
title: †Tectus tjilonganenis (K. Martin, 1905)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pnv-a8r-whm
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/alw-057-l9r
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r6f-0rz-sgy
title: †Parapronorites timorensis Haniel, 1915

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.v6qqv4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tradescantia zebrina",
 "Country is Gambia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022888-250811113504898/datasets/export for details.
DOI: 10.3535/7w7-ytz-vwj
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0yg-qpm-v0s
title: Cervus elaphus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s34-nxh-qd8
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/17y-3wv-jz3
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/009-mw9-gct
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f9d-0bh-twv
title: Joannites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/prj-ss6-y6e
title: Coleoidea Bather, 1888

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9m9-31m-42a
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nsy-tcc-qn9
title: Acropora Oken, 1815

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mew-mbv-mqc
title: Bochianites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5kb-v33-n1g
title: †Joannites klipsteini (von Mojsisovics, 1875)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ml3-t9f-jt1
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3q3-8z7-692
title: †Timorocidaris Wanner, 1920

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/488-5xw-12h
title: Cladiscites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1v3-364-x61
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/grn-93j-l6n
title: Anasibirites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16625252
title: Leaf fungal endophyte differs among plant functional groups in an alpine meadow
DOI: 10.15468/dl.9gqx6d
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Urena procumbens",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083730-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48573/656m-9j90
title: Surface Groups Panama 1984-2021
DOI: 10.48573/kf23-4344
title: Surface Groups Panama 1984-2021
DOI: 10.15468/dl.9jnk7k
title: Occurrence Download

description: A dataset listing the 63 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Geometry POLYGON((-92.03526 13.73035,-90.25816 13.73035,-90.25816 14.37369,-92.03526 14.37369,-92.03526 13.73035))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 63 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012154-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ezh4e
title: Occurrence Download

description: A dataset containing 6825 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "CoordinateUncertaintyInMeters 0.0-1060.0",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "OccurrenceStatus is Present",
 "TaxonKey is Vipera berus (Linnaeus, 1758)",
 "Year 2000-2025"
 ]
}

 The dataset includes 6825 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001721-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8pymv
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ganoderma pfeifferi",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011138-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/rrzj-sp79
title: Tamewhera pollen dataset

description: Raw data for the Tamewhera pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ek91-5g24
title: LDDsite1230 ostracode surface sample dataset

description: Raw data for the LDDsite1230 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/nh6w-9q11
title: LDDsite3817 ostracode surface sample dataset

description: Raw data for the LDDsite3817 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.kd6wrp
title: Occurrence Download

description: A dataset containing 2296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Deparia conilii (Franch. & Sav.) M.Kato",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2296 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022042-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/r4s6-pe43
title: Rots pollen dataset

description: Raw data for the Rots pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.r6a9hy
title: Occurrence Download

description: A dataset containing 126031 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mosquito Occurrence Dataset"
 ]
}

 The dataset includes 126031 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022034-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/r30b-r273
title: LDDsite597 water chemistry dataset

description: Raw data for the LDDsite597 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.m9uwzp
title: Occurrence Download

description: A dataset containing 262 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Prunus hypoleuca (Koehne) J.Wen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 262 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022043-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/m830-vf24
title: LDDsite532 ostracode surface sample dataset

description: Raw data for the LDDsite532 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xc2x-3x38
title: Itasca Bison Kill Site pollen dataset

description: Raw data for the Itasca Bison Kill Site pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/pymz-2r43
title: Mountaindale Reservoir diatom surface sample dataset

description: Raw data for the Mountaindale Reservoir diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.w942mk
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anoplophora glabripennis (Motschulsky, 1854)",
 "Country is Canada",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022044-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/m6en-pq36
title: LDDsite5903 ostracode surface sample dataset

description: Raw data for the LDDsite5903 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.