cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20362224.v2
title: Template Independent Component Analysis with Spatial Priors for Accurate Subject-Level Brain Network Estimation and Inference

description: Independent component analysis is commonly applied to functional magnetic resonance imaging (fMRI) data to extract independent components (ICs) representing functional brain networks. While ICA produces reliable group-level estimates, single-subject ICA often produces noisy results. Template ICA is a hierarchical ICA model using empirical population priors to produce more reliable subject-level estimates. However, this and other hierarchical ICA models assume unrealistically that subject effects are spatially independent. Here, we propose spatial template ICA (stICA), which incorporates spatial priors into the template ICA framework for greater estimation efficiency. Additionally, the joint posterior distribution can be used to identify brain regions engaged in each network using an excursions set approach. By leveraging spatial dependencies and avoiding massive multiple comparisons, stICA has high power to detect true effects. We derive an efficient expectation-maximization algorithm to obtain maximum likelihood estimates of the model parameters and posterior moments of the latent fields. Based on analysis of simulated data and fMRI data from the Human Connectome Project, we find that stICA produces estimates that are more accurate and reliable than benchmark approaches, and identifies larger and more reliable areas of engagement. The algorithm is computationally tractable, achieving convergence within 12 hr for whole-cortex fMRI analysis. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.20518485.v1
title: LC-HRMS DATA OF Caulerpa racemosa

description: This data contains metabolites that were identified from Sea grapes extract samples (Maceration; Soxhlet Method) using the Liquid Chromatography High-Resolution Mass Spectrometry (LC-HRMS).
DOI: 10.6084/m9.figshare.25539967.v1
title: grainspace mazie g600

description: grianspace mazie
DOI: 10.6084/m9.figshare.3558288.v1
title: Supplement 1. Stream signature metadata set containing all available distance–subsidy proportion data.

description: File List data.txt (MD5: 862c4be81647ac70e77cf13dfa41fc83)Description The data.txt file is a tab-delimited file. It contains the data set used in the meta-analysis of stream signatures.
DOI: 10.17632/dc8pks4zvw
title: Figure 4 for "Elevated levels of the sphingolipid MIPC disrupt the coordination of cell growth with cell wall formation in fission yeast"

description: Sterol distribution is altered in css1 mutant cells
DOI: 10.17632/rm9hhxwt6y
title: An  assessment of personality traits based on photos on Inastagram  

description: This research is focused on the accuracy assessment of personality traits based on visual content (photos) on the Instagram social network. The research sample consisted of a group of participants who provided voluntary their Instagram profiles for assessment (N = 4) and a group of independent assessors (N = 342). The accuracy of the assessment was based on the assessors' consensus and the degree of agreement between assessors and the accuracy criterion. The accuracy criterion is based on a self-assessment and an assessment by another close person selected by the profile owner. The highest assessor consensus was for extraversion, and the most accurately assessed traits were neuroticism and agreeableness – with women being more accurate in their assessments.   Despite expectations, however, the assessors were most accurate in evaluating neuroticism and agreeableness. 
The data consists of four datasets and one file of data description. Dataset A: Self-reports of Instagram profile owners. Four profile owners completed a questionnaire consisting of items on demographic data and user behavior on Instagram and personality (Ten Item Personality Inventory TIPI). Dataset B: Assessment by a close person. The assessment by a close person allowed us to create a correctness criterion based on a self-report assessment and an assessment by another person. Dataset C: Assessment of four Instagram profile owners by independent assessors (N = 342). In this data set are differences between correctness criterion and average of assessment of BF personality traits (overestimation and underestimation of traits by independent assessors). Dataset D: Correctness criterion. The calculation of average value between self-report and other report (close person). The file Variables description contents exact description of every variable in all four datasets.
DOI: 10.6084/m9.figshare.19924724.v3
title: C1LinearOscFading01.zip

description: Sample data from dumped oscillator (fast oscillations)
DOI: 10.6084/m9.figshare.27255561.v1
title: Dataset for Interspecific competition between larvae of <i>Aedes aegypti </i>and major African malaria vectors in a semi-field system in Tanzania

description: My research focuses on the interspecific competition between larvae of <i>Aedes aegypti</i> and major African malaria vectors; <i>Anopheles arabiensis, Anopheles gambiae </i>and <i>Anopheles funestus</i> in a semi-field setting in Tanzania, exploring the effects of their interactions on individual fitness.
DOI: 10.6084/m9.figshare.5104594.v1
title: Supplementary Material for: A Proteomic Study to Identify Soya Allergens – The Human Response to Transgenic versus Non-Transgenic Soya Samples

description: <i>Background:</i> In spite of being among the main foods responsible for allergic reactions worldwide, soybean <i>(Glycine max)</i>-derived products continue to be increasingly widespread in a variety of food products due to their well-documented health benefits. Soybean also continues to be one of the elected target crops for genetic modification. The aim of this study was to characterize the soya proteome and, specifically, IgE-reactive proteins as well as to compare the IgE response in soya-allergic individuals to genetically modified Roundup Ready soya® versus its non-transgenic control. <i>Methods:</i> We performed two-dimensional gel electrophoresis of protein extracts from a 5% genetically modified Roundup Ready flour sample and its non-transgenic control followed by Western blotting with plasma from 5 soya-sensitive individuals. We used peptide tandem mass spectrometry to identify soya proteins (55 protein matches), specifically IgE-binding ones, and to evaluate differences between transgenic and non-transgenic samples. <i>Results:</i> We identified 2 new potential soybean allergens – one is maturation associated and seems to be part of the late embryogenesis abundant proteins group and the other is a cysteine proteinase inhibitor. None of the individuals tested reacted differentially to the transgenic versus non-transgenic samples under study. <i>Conclusion:</i> Soybean endogenous allergen expression does not seem to be altered after genetic modification. Proteomics should be considered a powerful tool for functional characterization of plants and for food safety assessment.
DOI: 10.17632/h4tfpp7xyr
title: Data For: Bandung Basin Digital Elevation Model

description: Data For: Model description of combined numerical and stochastic groundwater flow in Bandung-Soreang Groundwater Basin (BSGB), West Java, Indonesia.
Surface elevation of BSGB references from the National Digital Elevation Model (DEMNAS) provided by Badan Informasi Geospasial (BIG), covering sheets 1209-31, 32, 33, 34; 1209-22, 24; and 1208-54, 63, 64.
DOI: 10.17632/hwxhw2sxys
title: Severe COVID-19 is marked by a dysregulated myeloid cell compartment. Schulte-Schrepping et al., 2020

description: Supplemental tables of the publication "Severe COVID-19 is marked by a dysregulated myeloid cell compartment." Schulte-Schrepping et al., 2020. Table S1 - Cohort details (related to all Figures) Table S2 - Detailed information on antibody panels used for mass cytometry analysis (related to Figure 1,3,6) Table S3 - List of antibodies used for multi-color flow cytometry (related to Figure 1,3,6). Table S4 - Cluster-specific marker gene lists from the scRNA-seq analyses (related to Figure 2,4,5,7 + S2-4,S6) Severe COVID-19 is marked by a dysregulated myeloid cell compartment Jonas Schulte-Schrepping, Nico Reusch, Daniela Paclik, Kevin Baßler, Stephan Schlickeiser, Bowen Zhang, Benjamin Krämer, Tobias Krammer, Sophia Brumhard, Lorenzo Bonaguro, Elena De Domenico, Daniel Wendisch, Martin Grasshoff, Theodore S. Kapellos, Michael Beckstette, Tal Pecht, Adem Saglam, Oliver Dietrich, Henrik E. Mei, Axel R. Schulz, Claudia Conrad, Désirée Kunkel, Ehsan Vafadarnejad, Cheng-Jian Xu, Arik Horne, Miriam Herbert, Anna Drews, Charlotte Thibeault, Moritz Pfeiffer, Stefan Hippenstiel, Andreas Hocke, Holger Müller-Redetzky, Katrin-Moira Heim, Felix Machleidt, Alexander Uhrig, Laure Bosquillon de Jarcy, Linda Jürgens, Miriam Stegemann, Christoph R. Glösenkamp, Hans-Dieter Volk, Christine Goffinet, Markus Landthaler, Emanuel Wyler, Philipp Georg, Maria Schneider, Chantip Dang-Heine, Nick Neuwinger, Kai Kappert, Rudolf Tauber, Victor Corman, Jan Raabe, Kim Melanie Kaiser, Michael To Vinh, Gereon Rieke, Christian Meisel, Thomas Ulas, Matthias Becker, Robert Geffers, Martin Witzenrath, Christian Drosten, Norbert Suttorp, Christof von Kalle, Florian Kurth, Kristian Händler, Joachim L. Schultze, Anna C Aschenbrenner, Yang Li, Jacob Nattermann, Birgit Sawitzki, Antoine-Emmanuel Saliba, Leif Erik Sander, Deutsche COVID-19 OMICS Initiative (DeCOI) Coronavirus Disease 2019 (COVID-19) is a mild to moderate respiratory tract infection, however, a subset of patients progresses to severe disease and respiratory failure. The mechanism of protective immunity in mild forms and the pathogenesis of severe COVID-19, associated with increased neutrophil counts and dysregulated immune responses, remains unclear. In a dual-center, two-cohort study, we combined single-cell RNA-sequencing and single-cell proteomics of whole blood and peripheral blood mononuclear cells to determine changes in immune cell composition and activation in mild vs. severe COVID-19 (242 samples from 109 individuals) over time. HLA-DR high CD11c high inflammatory monocytes with an interferon-stimulated gene signature were elevated in mild COVID-19. Severe COVID-19 was marked by occurrence of neutrophil precursors, as evidence of emergency myelopoiesis, dysfunctional mature neutrophils, and HLA-DR low monocytes. Our study provides detailed insights into the systemic immune response to SARS-CoV-2 infection and it reveals profound alterations in the myeloid cell compartment associated with severe COVID-19.
DOI: 10.6084/m9.figshare.20219174.v1
title: Figure 4. PSTI values under different SM conditions in each soil layer for different land cover types

description: PSTI and APSTI values under different soil moisture conditions in each soil layer for different land cover types
DOI: 10.17632/vfvfprdyxp
title: Gait Parameters of Patients with Parkinson's disease  with and without Arithmetic Cognitive Load

description: Dual-task (DT) paradigms have been used to assess comprehensive dysfunction related to cognitive and motor functions of Parkinson's disease (PD). Gait and cognitive performance of PD patients in DT are significantly different from those of healthy people. To show the differences, the gait parameters of patients with PD with and with out Arithmetic Cognitive Load are collected and those data could be used to compared with those of healthy people, which are matched and included in the dataset,too.
DOI: 10.17632/xv3kdy7r6k
title: PLDD: Pashtu Language Digits Dataset

description: We introduce a real Pashtu handwritten numerals dataset  of scanned images and make publically available for research and scientific use. Although more  than fifty million people in the world use this language for written and oral communication, no significant efforts are devoted to the Pashtu Optical Character Recognition (POCR). We present a database which will help in development  of POCR.
DOI: 10.6084/m9.figshare.28030157.v2
title: Supplemental data

description: <b>The tRF-33/IGF1 Axis Dysregulates Mitochondrial Homeostasis in HER2-Negative Breast Cancer</b>
DOI: 10.6084/m9.figshare.4721065.v1
title: Supplementary Material for: Realistic 3D-Printed Tracheobronchial Tree Model from a 1-Year-Old Girl for Pediatric Bronchoscopy Training

description: No Abstract<br>
DOI: 10.6084/m9.figshare.7553276.v1
title: Topologically non-equivalent textures generated by the nematic electrohydrodynamics

description: Some classes of nematic liquid crystals can be driven through turbulent regimes when forced by an external electric field. In contrast to isotropic fluids, a turbulent nematic exhibits a transition to a stochastic regime that is characterised by a network of topological defects. We study the deformations arising after the electric field has been switched-off. In contrast to the turbulent regime, the relaxation of this topological-defect regime involves the annihilation of an interlacement of defect lines. We show that these defect lines separate regions of the nematic having topologically non-equivalent textures.
DOI: 10.17632/b8rbwx35y4
title: Stratigraphic Microplastic from Puerto Rico

description: This dataset includes sedimentary, geochemical, and microplastic data for two sediment cores from Puerto Rico. The cores are from coastal lagoons in Guayama and Levittown. These data shows an increasing trend in microplastic concentration in more recent sediments, mirroring global plastic production rates. The more urban Levittown site contained more microplastic than the rural Guayama site. Microplastic concentrations also increased within suspected hurricane sediment deposits, suggesting hurricane induced microplastic transport and deposition in coastal sediments.
DOI: 10.17632/mp8tf2dz67
title: Two-dimensional helium-like atom in a homogeneous magnetic field: Numerically exact solutions

description: A two-dimensional helium atom (2D-helium) is a real subject for current studies, particularly regarding a hot topic of negatively charged excitons (trions) in semiconducting monolayers. The present study considers a 2D-helium-like atom in a homogeneous magnetic field. We are able to rewrite its Schrödinger equation into a polynomial form concerning dynamic variables. This form is useful for utilizing the algebraic calculation by annihilation and creation operators, enabling the successful application of the Feranchuk-Komarov (FK) operator method to obtain numerically exact solutions (energies and wave functions) for this system. The polynomialization of the equation allows obtaining analytical expressions of all matrix elements, which saves the computational resources significantly. Numerical results for the case without a magnetic field are comparable to other calculations. Moreover, the precise separation of the center-of-mass motion, as provided in this study, leads to an equation for the relative motion of the electrons in a magnetic field, incorporating all previously neglected terms. This result is useful for further study of trions where the electron effective mass is comparable with the hole effective mass. Additionally, we provide a FORTRAN program designed to solve the problems above.
DOI: 10.6084/m9.figshare.15040164.v1
title: Calculations for the Sawyer Mill Dam Removal Reservoir Response Manuscript Vegetation Structure Percent Cover Estimates and Plot Method Comparisons

description: These are the spreadsheets used in the Evans et al. Sawyer Mill dam removal reservoir response manuscript for calculating the comparisons between the SfM/ML classified vegetation cover and conventionally estimated vegetation cover within the vegetation plot assessment radii, as well as the numbers behind the landcover percent estimates from the drone landscape level perspective. Please see the spreadsheets and the manuscript for additional details.<br>These materials were made using resources from an NSF EPSCoR funded project “RII Track-2 FEC: Strengthening the scientific basis for decision-making about dams: Multi-scale, coupled-systems research on ecological, social, and economic trade-offs” (a.k.a. "Future of Dams"). Support for this project is provided by the National Science Foundation’s Research Infrastructure Improvement NSF #IIA-1539071. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.6084/m9.figshare.3100120.v5
title: Speaker Gaze and Trust

description: The data and supplementary materials presented here form the basis of our paper <b>"Direct Speaker Gaze Promotes Trust in Truth-Ambiguous Statements" (<i>H. Kreysa, L. Kessler, & S.R. Schweinberger, 2016, </i></b><b><i><i>PLoS ONE, 11(9), </i>e0162291. doi:10.1371/journal.pone.0162291.</i>).<br></b><br>As described in the paper (downloadable here), 35 student participants indicated by button press whether or not they believed a truth-ambiguous statement, uttered by a speaker in one of 36 short video clips. Importantly, the speaker sometimes looked directly into the camera, at other times she averted her gaze.<b><br><br>1. Data<br>We present four datasets as tab-delimited text:<br><br>1.1. Gaze_RESPrts.txt </b>(responses and RTs for main experiment), with the following variables:<br>- SubjectCode (N = 35)<br>- Video (.avi)<br>- Item (N = 36)<br>- RT from response screen in ms<br>- Response (yes/no)<br>- Orientation (direct gaze / averted right / averted left)<br>- debrief (mention of gaze direction in debrief questionnnaire)<br><b><br>1.2 Audioonly_RESPrts.txt </b>(responses and RTs for control experiment), with the following variables:<br>- SubjectCode (N = 37)<br>- Audio (.wav)<br>- Item (N = 36)<br>- RT from response screen in ms<br>- Response (yes/no)<br>- Orientation_original (direct gaze / averted)<b><br><br>1.3 Gaze_ratings.txt </b>(post-experimental ratings of the speaker's attributes, main experiment), with the following variables:<br>- SubjectCode (N = 35)<br>- Attribute (6 levels)<br>- Rating-recoded (1: lowest - 6: highest)<br>- Response_time<br>- Rating_trial (6 per participant)<br>- Num.yes (number of yes-responses in main experiment per participant, out of 36)<b><br><br>1.4 Gaze_fixations.txt</b> (total fixation time to each AoI during video presentation), with the following variables:<br>- SubjectCode (N = 35)<br>- Video (.avi)<br>- AoI (Area of Interest assigned in SMI BeGaze, see attached example image "AOIs.bmp": eyes, bottomright, bottomleft, topright, topleft, whitespace)<br>- Fixtime (total fixation time per region)<br>Eye movements were recorded using an SMI iViewX Hi-Speed 500 tracker, and fixation events were extracted for each participant using SMI BeGaze (v. 3.4.52).<br><br><b>2. Stimulus examples</b><br>Two videos, one with direct gaze (1_Hund_direct.avi) and one with with averted gaze (mirrored to create right-averted gaze: 1_Hund_right.avi)<br><b><br>3. Further Material</b><br>- <b>AOIs.bmp</b>: image showing assignment of areas of interest on the videos<br>- <b>HK_Poster_gaze&trust_PPRU2015.pdf</b>: poster presented at the XIth Workshop of the Person Perception Research Unit, Jena, Germany (Workshop XI (April, 9-10, 2015): “Human Communication: From Person Perception to Social Action”)<br><br>Please email me if you require any further information (helene.kreysa@uni-jena.de).<br><br>
DOI: 10.17632/42pyc27gy7
title: Data of the sediment core NP02 from the North Pacific Ocean

description: This dataset includes a total of four .xlsx files for the sediment core NP02 from the North Pacific Ocean. ds01 contains IRM acquisition curve decomposition results, ds02 contains RPI estimates, ds03 contains glass shard chemistry of three tephra layers, and ds04 contains HIRM data in core NP02. All these files can be opened by the Microsoft Excel.
DOI: 10.17632/w9ywjnmcv5
title: Replication Data and Code for Fearing the Fed: How Wall Street Reads Main Street

description: Replicatation Data and Code for 

Fearing the Fed: How Wall Street Reads Main Street
Vadim Elenev, Tzuo-Hann Law, Dongho Song, Amir Yaron

This folder contains the source code necessary to reproduce the figures and tables from the published paper.
DOI: 10.6084/m9.figshare.11521659.v1
title: MOESM7 of Multi-level transcriptome sequencing identifies COL1A1 as a candidate marker in human heart failure progression

description: Additional file 7: Table S7. Fibrosis related genes identified by lasso regression analysis.
DOI: 10.6084/m9.figshare.17147837.v1
title: raw FASTQ

description: 16S sequencing of bacteria from plant and soil samples
DOI: 10.6084/m9.figshare.27932199.v1
title: IMPACT OF CENTRAL POSTSTROKE PAIN ON QUALITY OF LIFE: A COMPARATIVE ANALYSIS AMONG STROKE SURVIVORS

description: The study objective was to analyze the differences in QoL among patients with and without central poststroke pain (CPCP) and identify specific domains that differ significantly based on CPSP status. In the domains SC, V, L, M, W, and EU, patients will give responses in the form of 5 choices to the given questions, and each response has a score with a range of 1 to 5. The higher the score, the better the patient's quality of life. The five responses were: "Can't do at all" (score 1), "a lot of difficulties", "some difficulty", "a little difficulty", and "no difficulty at all" (score 5). Meanwhile, in other domains (T, P, MD, FR, and SR), patients also chose 5 responses in the form of: "Strongly agree" (score 1), "Somewhat agree", "Not agree or disagree", "Somewhat disagree" and "Strongly disagree" (score 5).
DOI: 10.6084/m9.figshare.5126005.v1
title: Supplementary Material for: Accelerated Reepithelialization by Triterpenes: Proof of Concept in the Healing of Surgical Skin Lesions

description: The acceleration of wound healing is a major surgical concern. A triterpene extract from birch bark (Betulae cortex) experimentally enhances keratinocyte differentiation in vitro and accelerates wound healing ex vivo. We conducted an open, blind-evaluated, controlled, prospective, randomized (1:1) phase II clinical trial in patients requiring split-thickness skin graft transplantation at two university hospitals in Germany. Donor sites on the upper legs were covered with a moist silicone-coated dressing. Oleogel-S10 ointment containing 10% birch bark extract was randomly applied to the distal or proximal half of the wound, with the other half serving as an intraindividual control, for 14 days after the skin graft surgery. The primary efficacy variable was faster reepithelialization as determined from macrophotographs by independent, blinded experts. Twenty-four patients were randomized and completed the trial. After the 14-day test period, the planned interim analysis revealed a highly significant (p &lt; 0.0001) superiority of Oleogel-S10 in the primary efficacy variable and the trial was terminated early due to ethical concerns. The treatment side was also better reepithelialized and more similar to normal skin after 3 months. In conclusion, Oleogel-S10 significantly accelerated reepithelialization at split-thickness skin graft donor sites. Treatment with Oleogel-S10 was safe and well tolerated. i 2014 S. Karger AG, Basel
DOI: 10.6084/m9.figshare.6462380.v1
title: Rev-rec Source - Code Reviews Dataset (SEAA2018)

description: This dataset contains source code reviews of 51 projects mined from Gerrit (14 projects, ~133K pull requests) and GitHub (37 projects, ~159K pull requests). The dataset has been used in the upcoming article: <br>Lipcak, J., Rossi, B. (2018). <i>A Large-Scale Study on Source Code Reviewer Recommendation</i>, in 44th Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2018, IEEE.<br>Included files: 51 mined JSON files (zip), summary project list with descriptive statistics (pdf), readme file (md).<br><br>