cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11347655
title: 2PE-ISM images of 100nm fluorescent nanospheres

description: 2PE-ISM image acquired with custom LSM system at Istituto Italiano di Tecnlogia. The .mat file contains the 25 images acquired with the SPAD array detector, as well as all the relevant metadata. <br>
DOI: 10.6084/m9.figshare.13096409
title: Mykrobe Panel TB version 20201014

description: This is TB panel data version 20201014, to be used by the command line tool mykrobe.
DOI: 10.6084/m9.figshare.13096409.v1
title: Mykrobe Panel TB version 20201014

description: This is TB panel data version 20201014, to be used by the command line tool mykrobe.
DOI: 10.5281/zenodo.4091366
title: Survey data, models and dated samples of the Pliocene shorelines of Camarones, Argentina (Ver 1.1).

description: The dataset cosists of a spreadsheet containing data on GPS surveys, dynamic topography extracted from published models (gplates.org), Shell preservation scoring, Strontium Isotopic Stratigraphy ages, and Global mean Sea Level calculations. Version 1.1 contains fixes to small errors and formulas.
description: Final version
DOI: 10.5281/zenodo.3929150
title: Survey data, models and dated samples of the Pliocene shorelines of Camarones, Argentina (Ver 1.1).

description: The dataset cosists of a spreadsheet containing data on GPS surveys, dynamic topography extracted from published models (gplates.org), Shell preservation scoring, Strontium Isotopic Stratigraphy ages, and Global mean Sea Level calculations. Version 1.1 contains fixes to small errors and formulas.
description: Final version
DOI: 10.5281/zenodo.4091057
title: I-BiDaaS - CAIXA - IP addresses - Tokenised Dataset

description: The generated dataset provides data on the relationships between customers in order to build part of the social graph of the bank. The data was collected from the logs of connections to the online banking of CaixaBank customers and stored in the entity’s Datapool for security and fraud prevention reasons. More concretely the data is coming from a set of restricted tables (relational database), with information related to the customers and their IP address when connecting online, used afterwards to see potential relationships between users’ and skip or enhance the security controls on eventual bank transfers between the connected users.
DOI: 10.5281/zenodo.4091056
title: I-BiDaaS - CAIXA - IP addresses - Tokenised Dataset

description: The generated dataset provides data on the relationships between customers in order to build part of the social graph of the bank. The data was collected from the logs of connections to the online banking of CaixaBank customers and stored in the entity’s Datapool for security and fraud prevention reasons. More concretely the data is coming from a set of restricted tables (relational database), with information related to the customers and their IP address when connecting online, used afterwards to see potential relationships between users’ and skip or enhance the security controls on eventual bank transfers between the connected users.
DOI: 10.21227/rycq-7b90
title: Appendix

description: Appendix for the submitted paper
DOI: 10.21227/mec9-aa09
title: Appendix

description: Appendix for the submitted paper
DOI: 10.25377/sussex.13013384
title: Data set for publication 'Enhanced ion–cavity coupling through cavity cooling in the strong coupling regime'

description: <b>Data set for the figures in the publication 'Enhanced ion–cavity coupling through cavity cooling in the strong coupling regime.</b><b>Scientific Reports 10, 15693 (2020)'</b><br>The data are the ones to produce the figures in the publication. Details can be found within the spreadsheet.<br><b>Abstract:</b>Incorporating optical cavities in ion traps is becoming increasingly important in the development of photonic quantum networks. However, the presence of the cavity can hamper efficient laser cooling of ions because of geometric constraints that the cavity imposes and an unfavourable Purcell effect that can modify the cooling dynamics substantially. On the other hand the coupling of the ion to the cavity can also be exploited to provide a mechanism to efficiently cool the ion. In this paper we demonstrate experimentally how cavity cooling can be implemented to improve the localisation of the ion and thus its coupling to the cavity. By using cavity cooling we obtain an enhanced ion–cavity coupling of 2π×(16.7±0.1) MHz, compared with 2π×(15.2±0.1) MHz when using only Doppler cooling.<br><br>
DOI: 10.25377/sussex.13013384.v1
title: Data set for publication 'Enhanced ion–cavity coupling through cavity cooling in the strong coupling regime'

description: <b>Data set for the figures in the publication 'Enhanced ion–cavity coupling through cavity cooling in the strong coupling regime.</b><b>Scientific Reports 10, 15693 (2020)'</b><br>The data are the ones to produce the figures in the publication. Details can be found within the spreadsheet.<br><b>Abstract:</b>Incorporating optical cavities in ion traps is becoming increasingly important in the development of photonic quantum networks. However, the presence of the cavity can hamper efficient laser cooling of ions because of geometric constraints that the cavity imposes and an unfavourable Purcell effect that can modify the cooling dynamics substantially. On the other hand the coupling of the ion to the cavity can also be exploited to provide a mechanism to efficiently cool the ion. In this paper we demonstrate experimentally how cavity cooling can be implemented to improve the localisation of the ion and thus its coupling to the cavity. By using cavity cooling we obtain an enhanced ion–cavity coupling of 2π×(16.7±0.1) MHz, compared with 2π×(15.2±0.1) MHz when using only Doppler cooling.<br><br>
DOI: 10.5281/zenodo.4067986
title: Data set from Bosè F, Renna LV, Fossati B, Arpa G, Labate V, Milani V, Botta A, Micaglio E, Meola G, Cardani R. TNNT2 Missplicing in Skeletal Muscle as a Cardiac Biomarker in Myotonic Dystrophy Type 1 but Not in Myotonic Dystrophy Type 2. Front Neurol. 2019 Sep 27;10:992. doi: 10.3389/fneur.2019.00992. PMID: 31611837; PMCID: PMC6776629.

description: Data set from Bosè F, Renna LV, Fossati B, Arpa G, Labate V, Milani V, Botta A, Micaglio E, Meola G, Cardani R. TNNT2 Missplicing in Skeletal Muscle as a Cardiac Biomarker in Myotonic Dystrophy Type 1 but Not in Myotonic Dystrophy Type 2. Front Neurol. 2019 Sep 27;10:992. doi: 10.3389/fneur.2019.00992. PMID: 31611837; PMCID: PMC6776629. This is the abstract: Cardiac involvement is one of the most important manifestations of the multisystemic phenotype of patients affected by myotonic dystrophy (DM) and represents the second cause of premature death. Molecular mechanisms responsible for DM cardiac defects are still unclear; however, missplicing of the cardiac isoform of troponin T (<em>TNNT2</em>) and of the cardiac sodium channel (<em>SCN5A</em>) genes might contribute to the reduced myocardial function and conduction abnormalities seen in DM patients. Since, in DM skeletal muscle, the <em>TNNT2</em> gene shows the same aberrant splicing pattern observed in cardiac muscle, the principal aim of this work was to verify if the <em>TNNT2</em> aberrant fetal isoform expression could be secondary to myopathic changes or could reflect the DM cardiac phenotype. Analysis of alternative splicing of <em>TNNT2</em> and of several genes involved in DM pathology has been performed on muscle biopsies from patients affected by DM type 1 (DM1) or type 2 (DM2) with or without cardiac involvement. Our analysis shows that missplicing of muscle-specific genes is higher in DM1 and DM2 than in regenerating control muscles, indicating that these missplicing could be effectively important in DM skeletal muscle pathology. When considering the <em>TNNT2</em> gene, missplicing appears to be more evident in DM1 than in DM2 muscles since, in DM2, the <em>TNNT2</em> fetal isoform appears to be less expressed than the adult isoform. This evidence does not seem to be related to less severe muscle histopathological alterations that appear to be similar in DM1 and DM2 muscles. These results seem to indicate that the more severe <em>TNNT2</em> missplicing observed in DM1 could not be related only to myopathic changes but could reflect the more severe general phenotype compared to DM2, including cardiac problems that appear to be more severe and frequent in DM1 than in DM2 patients. Moreover, <em>TNNT2</em> missplicing significantly correlates with the QRS cardiac parameter in DM1 but not in DM2 patients, indicating that this splicing event has good potential to function as a biomarker of DM1 severity and it should be considered in pharmacological clinical trials to monitor the possible effects of different therapeutic approaches on skeletal muscle tissues. <strong>Keywords: </strong> alternative splicing; cardiac involvement; cardiac troponin T; myotonic dystrophies; skeletal muscle.
DOI: 10.5281/zenodo.4067985
title: Data set from Bosè F, Renna LV, Fossati B, Arpa G, Labate V, Milani V, Botta A, Micaglio E, Meola G, Cardani R. TNNT2 Missplicing in Skeletal Muscle as a Cardiac Biomarker in Myotonic Dystrophy Type 1 but Not in Myotonic Dystrophy Type 2. Front Neurol. 2019 Sep 27;10:992. doi: 10.3389/fneur.2019.00992. PMID: 31611837; PMCID: PMC6776629.

description: Data set from Bosè F, Renna LV, Fossati B, Arpa G, Labate V, Milani V, Botta A, Micaglio E, Meola G, Cardani R. TNNT2 Missplicing in Skeletal Muscle as a Cardiac Biomarker in Myotonic Dystrophy Type 1 but Not in Myotonic Dystrophy Type 2. Front Neurol. 2019 Sep 27;10:992. doi: 10.3389/fneur.2019.00992. PMID: 31611837; PMCID: PMC6776629. This is the abstract: Cardiac involvement is one of the most important manifestations of the multisystemic phenotype of patients affected by myotonic dystrophy (DM) and represents the second cause of premature death. Molecular mechanisms responsible for DM cardiac defects are still unclear; however, missplicing of the cardiac isoform of troponin T (<em>TNNT2</em>) and of the cardiac sodium channel (<em>SCN5A</em>) genes might contribute to the reduced myocardial function and conduction abnormalities seen in DM patients. Since, in DM skeletal muscle, the <em>TNNT2</em> gene shows the same aberrant splicing pattern observed in cardiac muscle, the principal aim of this work was to verify if the <em>TNNT2</em> aberrant fetal isoform expression could be secondary to myopathic changes or could reflect the DM cardiac phenotype. Analysis of alternative splicing of <em>TNNT2</em> and of several genes involved in DM pathology has been performed on muscle biopsies from patients affected by DM type 1 (DM1) or type 2 (DM2) with or without cardiac involvement. Our analysis shows that missplicing of muscle-specific genes is higher in DM1 and DM2 than in regenerating control muscles, indicating that these missplicing could be effectively important in DM skeletal muscle pathology. When considering the <em>TNNT2</em> gene, missplicing appears to be more evident in DM1 than in DM2 muscles since, in DM2, the <em>TNNT2</em> fetal isoform appears to be less expressed than the adult isoform. This evidence does not seem to be related to less severe muscle histopathological alterations that appear to be similar in DM1 and DM2 muscles. These results seem to indicate that the more severe <em>TNNT2</em> missplicing observed in DM1 could not be related only to myopathic changes but could reflect the more severe general phenotype compared to DM2, including cardiac problems that appear to be more severe and frequent in DM1 than in DM2 patients. Moreover, <em>TNNT2</em> missplicing significantly correlates with the QRS cardiac parameter in DM1 but not in DM2 patients, indicating that this splicing event has good potential to function as a biomarker of DM1 severity and it should be considered in pharmacological clinical trials to monitor the possible effects of different therapeutic approaches on skeletal muscle tissues. <strong>Keywords: </strong> alternative splicing; cardiac involvement; cardiac troponin T; myotonic dystrophies; skeletal muscle.
DOI: 10.25505/fiz.icsd.cc20jj14
title: CSD 1862915: Experimental Crystal Structure Determination

description: Related Article: Jaegyeom Kim, Juhyun Kim, Maxim Avdeev, Hoseop Yun, Seung-Joo Kim|2018|J.Mater.Chem.A|6|22478|doi:10.1039/C8TA09170F
DOI: 10.25505/fiz.icsd.cc20z179
title: CSD 1875910: Experimental Crystal Structure Determination

description: Related Article: Jie Chen,  Lin Xiong,  Ling Chen,  Li-Ming Wu|2018|J.Am.Chem.Soc.|140|14082|doi:10.1021/jacs.8b10209
DOI: 10.21227/1pnn-qn19
title: Baseline

description: Baseline approch using a very simple model and do constant prediction
DOI: 10.21227/cx1p-ex42
title: BGP comprehensive anomalies

description: This is for BGP anomaly analysis
DOI: 10.21227/c5av-jf02
title: BGP comprehensive anomalies

description: This is for BGP anomaly analysis
DOI: 10.5281/zenodo.4091026
title: I-BiDaaS - CAIXA - IP addresses - Synthetic Dataset

description: The generated dataset provides data on the relationships between customers in order to build part of the social graph of the bank. The data was synthetically generated based on real data coming from a set of restricted tables (relational database), with information related to the customers and their IP address when connecting online. CAIXA and IBM generated the data recipe for the data fabrication using IBM TDF. Through an iterative analysis of obtained results, the rules were improved in order to obtain the fabricated dataset used for testing the MVP, with more than 1 million entries.
DOI: 10.5281/zenodo.4091025
title: I-BiDaaS - CAIXA - IP addresses - Synthetic Dataset

description: The generated dataset provides data on the relationships between customers in order to build part of the social graph of the bank. The data was synthetically generated based on real data coming from a set of restricted tables (relational database), with information related to the customers and their IP address when connecting online. CAIXA and IBM generated the data recipe for the data fabrication using IBM TDF. Through an iterative analysis of obtained results, the rules were improved in order to obtain the fabricated dataset used for testing the MVP, with more than 1 million entries.
DOI: 10.25386/genetics.13090322
title: Supplemental Material for Han et al., 2020

description: We submit here, the Supplementary Online Material (SOM).
DOI: 10.25386/genetics.13090322.v1
title: Supplemental Material for Han et al., 2020

description: We submit here, the Supplementary Online Material (SOM).
DOI: 10.6084/m9.figshare.13096499
title: Supplementary Material for: Predictors of Lymph Node Invasion in Patients with Clinically Localized Prostate Cancer Who Undergo Radical Prostatectomy and Extended Pelvic Lymph Node Dissection: The Role of Obesity

description: <b><i>Objective:</i></b> In patients with intermediate- and high-risk localized prostate cancer (PCa), improving the detection of occult lymph node metastases could play a pivotal role for therapeutic counseling and planning. The recent literature shows that several clinical factors may be related to PCa aggressiveness. The aim of this study is to investigate the potential associations between clinical factors and the risk of multiple lymph node invasion (LNI) in patients with intermediate- and high-risk localized PCa (cT1/2, cN0, and ISUP grading group &gt;2 and/or prostate-specific antigen (PSA) &gt;10 ng/mL) who underwent radical prostatectomy (RP) and extended pelvic lymph node dissection (ePLND). <b><i>Materials and Methods:</i></b> In a period ranging from January 2014 to December 2018, 880 consecutive patients underwent RP with ePLND for PCa. Among these, 481 met the inclusion criteria and were selected. Data were prospectively collected within an institutional dataset and retrospectively analyzed. Age (years), body mass index (BMI; kg/m<sup>2</sup>), PSA (ng/mL), prostate volume (mL), and biopsy positive cores (BPC; %) were recorded for each case. BMI and BPC were considered continuous and categorical variables, respectively. The logistic regression models evaluated the association of clinical factors with the risk of nodal metastases. <b><i>Results:</i></b> LNI was detected in 73/418 patients (15.2%) of whom 40/418 (8.3%) harbored multiple LNI (median 2, IQR: 3–4). On multivariate analysis, BMI was independently associated with the risk of multiple LNI in the pathological specimen when compared with patients without LNI (OR = 1.147; <i>p</i> = 0.018), as well as the percentage of biopsy positive cores (OR = 1.028; <i>p</i> &lt; 0.0001) and European Association of Urology high-risk class (OR = 5.486; <i>p</i> &lt; 0.0001). BMI was the only predictor of multiple LNI when compared with patients with 1 positive node (OR = 1.189, <i>p</i> = 0.027). <b><i>Conclusions:</i></b> In intermediate- and high-risk localized PCa, BMI was an independent predictor of the risk of multiple lymph node metastases. The inclusion of BMI within LNI risk calculators could be helpful, and a detailed counseling in obese patients should be required.
DOI: 10.6084/m9.figshare.13096181
title: Species average abundance per tow per year (community matrices) for each bank

description: This file contains ten tabs, one for each of the ten banks of the Scotian Shelf (short form of names given in Figure 1 of the associated manuscript). Within each tab, species are divided into three trophic groups: large-bodied predators (pred), mesopredators (meso), and prey (prey). For each species (rows), its average abundance per tow on that bank is given for each year (columns) on that bank. These data can be used as input to the island R functions or other community ordination analyses. Here, I have highlighted colonization and local extinction events according to the PA_35 rules-based method outlined in the manuscript. In each year, I counted the number of colonizations (COL) and local extinctions (EXT), the resultant species richness (SR), cumulative colonizations to calculate colonization rate (CR), cumulative extinctions to calculate extinction rate (ER), and turnover (TOV: sum of COL + EXT divided by SR from present + previous year). At the bottom of each tab, community-level (pred + meso + prey) COL, EXT, SR, CR, ER and TOV are given for each year. See READ ME tab for more information.
DOI: 10.6084/m9.figshare.13096181.v1
title: Species average abundance per tow per year (community matrices) for each bank

description: This file contains ten tabs, one for each of the ten banks of the Scotian Shelf (short form of names given in Figure 1 of the associated manuscript). Within each tab, species are divided into three trophic groups: large-bodied predators (pred), mesopredators (meso), and prey (prey). For each species (rows), its average abundance per tow on that bank is given for each year (columns) on that bank. These data can be used as input to the island R functions or other community ordination analyses. Here, I have highlighted colonization and local extinction events according to the PA_35 rules-based method outlined in the manuscript. In each year, I counted the number of colonizations (COL) and local extinctions (EXT), the resultant species richness (SR), cumulative colonizations to calculate colonization rate (CR), cumulative extinctions to calculate extinction rate (ER), and turnover (TOV: sum of COL + EXT divided by SR from present + previous year). At the bottom of each tab, community-level (pred + meso + prey) COL, EXT, SR, CR, ER and TOV are given for each year. See READ ME tab for more information.
DOI: 10.25387/g3.13050107.v1
title: Supplemental Material for Nsibi et al., 2020

description: <br> File S1 contains the raw phenotypic data. Descriptive statistics of phenotypic data are presented in File S2 .File S3 contains the estimations of trait heritability. The genotypic data are available in File S4. The results of QTL detection are summarized in File S5 and the two genetic maps are provided in File S6. Pairwise genetic correlation between the traits are available in File S7. R scripts are provided in File S8. <br>
DOI: 10.25387/g3.13050107
title: Supplemental Material for Nsibi et al., 2020

description: <br> File S1 contains the raw phenotypic data. Descriptive statistics of phenotypic data are presented in File S2 .File S3 contains the estimations of trait heritability. The genotypic data are available in File S4. The results of QTL detection are summarized in File S5 and the two genetic maps are provided in File S6. Pairwise genetic correlation between the traits are available in File S7. R scripts are provided in File S8. <br>
DOI: 10.6084/m9.figshare.13096511
title: Bank area and isolation

description: This file contains measures of bank area and isolation (distance to nearest neighbouring bank, edge to edge) for each of the ten banks of the Scotian Shelf. Where banks were abutting, rather than a distance of 0km, 1km was recorded. Area measured in squared kilometres, distance in km.
DOI: 10.6084/m9.figshare.13096511.v1
title: Bank area and isolation

description: This file contains measures of bank area and isolation (distance to nearest neighbouring bank, edge to edge) for each of the ten banks of the Scotian Shelf. Where banks were abutting, rather than a distance of 0km, 1km was recorded. Area measured in squared kilometres, distance in km.
DOI: 10.6084/m9.figshare.5607241
title: InSAR-PWV dataset

description: Single Look Complex (SLC) images, acquired by the C-band Sentinel-1 space-borne SAR mission in Interferometric Wide swath (IW) mode on 25 August and 6 September 2015 at 1810 UTC, taken along the ascending orbit, and on 26 August and 7 September 2015 at 0610 UTC, in the descending orbit, were processed using the SAR interferometry technique to obtain InSAR-PWV maps. These small maps are merged in one large map of differential PWV values over the Iberian Peninsula.<br>
DOI: 10.6084/m9.figshare.5607241.v1
title: InSAR-PWV dataset

description: Single Look Complex (SLC) images, acquired by the C-band Sentinel-1 space-borne SAR mission in Interferometric Wide swath (IW) mode on 25 August and 6 September 2015 at 1810 UTC, taken along the ascending orbit, and on 26 August and 7 September 2015 at 0610 UTC, in the descending orbit, were processed using the SAR interferometry technique to obtain InSAR-PWV maps. These small maps are merged in one large map of differential PWV values over the Iberian Peninsula.<br>
DOI: 10.5281/zenodo.4091399
title: Complete GWA dataset related to: RNA-binding protein Syncrip regulates Starvation-Induced Hyperactivity in adult Drosophila

description: Complete GWA data for the paper "RNA-binding protein Syncrip regulates Starvation-Induced Hyperactivity in adult Drosophila". bioRxiv: https://doi.org/10.1101/2020.01.07.897652.
DOI: 10.5281/zenodo.4091398
title: Complete GWA dataset related to: RNA-binding protein Syncrip regulates Starvation-Induced Hyperactivity in adult Drosophila

description: Complete GWA data for the paper "RNA-binding protein Syncrip regulates Starvation-Induced Hyperactivity in adult Drosophila". bioRxiv: https://doi.org/10.1101/2020.01.07.897652.
DOI: 10.6084/m9.figshare.13096517
title: Datasets - Perception of RAS-produced Fish – The View of Private Consumers and Fine Dining Chefs in Germany

description: The data in these datasets has been collected for and is the basis of the publication titled "Perception of RAS-produced Fish – The View of Private Consumers and Fine Dining Chefs in Germany".<br>The data has been collected through surveys and the basis for the questionnaire design utilized priciples from the theory of planned behavior as well as multi-attribute attitude models.<br>