cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.bg79cnp8r
title: Data: Experimental evidence of warming-induced disease emergence and its prediction by a trait-based mechanistic model

description: Predicting the effects of seasonality and climate change on the emergence
 and spread of infectious disease remains difficult, in part because of
 poorly understood connections between warming and the mechanisms driving
 disease. Trait-based mechanistic models combined with thermal performance
 curves arising from the Metabolic Theory of Ecology (MTE) have been
 highlighted as a promising approach going forward; however, this framework
 has not been tested under controlled experimental conditions that isolate
 the role of gradual temporal warming on disease dynamics and emergence.
 Here, we provide experimental evidence that a slowly warming host –
 parasite system can be pushed through a critical transition into an
 epidemic state. We then show that a trait-based mechanistic model with MTE
 functional forms can predict the critical temperature for disease
 emergence, subsequent disease dynamics through time, and final infection
 prevalence in an experimentally warmed system of Daphnia and a
 microsporidian parasite. Our results serve as a proof of principle that
 trait-based mechanistic models using MTE sub-functions can predict
 warming-induced disease emergence in data-rich systems – a critical step
 towards generalizing the approach to other systems.
description: Readme file attached
DOI: 10.6084/m9.figshare.31164679
title: Daa_Hiss_SpectralIntensity_test.txt: Diffusion coefficients formed by hiss wave

description: Data file <i>Daa_Hiss_SpectralIntensity_test.txt</i>: Diffusion coefficients formed by hiss wave for radiation belt electron lifetime analysis.
DOI: 10.6084/m9.figshare.31164679.v1
title: Daa_Hiss_SpectralIntensity_test.txt: Diffusion coefficients formed by hiss wave

description: Data file <i>Daa_Hiss_SpectralIntensity_test.txt</i>: Diffusion coefficients formed by hiss wave for radiation belt electron lifetime analysis.
DOI: 10.5061/dryad.dncjsxkx7
title: Beyond seedlings: ectomycorrhizal fungal networks and growth of mature Pseudotsuga menziesii

description: 1. Mycorrhizal networks are conduits for the transfer of resources between
 hosts. While ectomycorrhizal networks (EMN) are known to influence
 seedlings, their effect on adult tree growth remains unknown and may have
 important implications for forest responses to future climates. 2. We used
 annual basal area increment of trees and previously described Rhizopogon
 vesiculosus and Rhizopogon vinicolor EMNs to examine an association
 between the number of connections between trees through an EMN and the
 growth of adult interior Douglas-fir. We compared this relationship for
 the year the networks were mapped, in 2008, with eight years previous and
 eight years afterward. We also compared the variation in standardized
 growth (2000–2016) to examine the association between growth variability
 and EMN variables. 3. Greater growth was positively associated with 1) the
 number of connections to other trees via a Rhizopogon vinicolor EMN, and
 2) the number of genets of Rhizopogon vesiculosis by which a tree was
 colonized. Variation of growth (2000–2016) was negatively associated with
 increasing number of connections to other trees via Rhizopogon vinicolor.
 Synthesis. These findings, for the first time, indicate that EMNs may
 positively influence the growth of adult trees. The difference in tree
 growth response between the sister fungal species highlights a novel
 avenue to identify interspecific and intraspecific differences between
 species occurring at different depths in the soil. Our study has important
 implications when considering the role of EMNs in influencing forest
 health and mitigating stress from environmental conditions.
description: Data is split for the 10 x
 10 plots used for the analysis and sampled trees that were excluded from
 the analysis. A duplicate README file is included within the Excel
 datasheet.
DOI: 10.5061/dryad.73n5tb2v8
title: Data from: Predicting range expansion of invasive species: pitfalls and best practices for obtaining biologically realistic projections

description: Species Distribution Models (SDM) for seven invasive plant species in
 North America. Species distribution models (SDMs) are widely used to
 forecast potential range expansion of invasive species. However, invasive
 species occurrence datasets often have spatial biases that may violate key
 SDM assumptions. We examined alternative methods of spatial bias
 correction and multiple methods for model evaluation for seven invasive
 plant species. Species SDMs include Common Tansy (Tanacetum
 vulgare), Wild Parsnip (Pastinaca sativa), Leafy Spurge (Euphorbia
 virgata), Common Teasel (Dipsacus fullonum), Brown Knapweed (Centaurea
 jacea), Black Swallowwort (Vincetoxicum nigrum), and Dalmatian Toadflax
 (Linaria dalmatica). 
description: We employed bias-correction measures for both occurrence sampling
 (1km occurrence points and 20km occurrence points) and background sampling
 (GKD 0, GKD1, and GKD 3) inputs in a factorial design for Maxent SDMs
 resulting in six potential models for each of the seven
 species. 
description: Model predictions are formatted as GeoTiff (TIF) files. Model
 selection matrix to summarize model output statistics and README
 file included.
DOI: 10.5061/dryad.8kprr4xkt
title: Geographic locations of presence points and the size of 14 skull measurements

description: The phylogeny and species boundaries of Gazella subgutturosa and G. marica
 have been long debated. The achievements of past conservation efforts have
 been compromised by a lack of knowledge about the phylogeny and taxonomic
 status of different populations. We integrated the recent genetic findings
 by previous studies with morphometric analyses and ecological niche
 modelling (ENM) to assess discreteness among populations of these gazelle
 species in Asia. Taxonomic diversity of gazelles was investigated by using
 principal components analysis (PCA) based on 14 cranial measures of male
 skulls. Ecological niche divergence was examined based on a PCA on
 climatic factors and a species distribution modelling (SDM) with
 environmental variables. Morphometric results indicated substantial
 differentiation in size between skulls of the western Zagros Mountains
 including west and south-western Iran and Arabian Peninsula from all other
 samples east of the Zagros Mountains from Iran to China. ENM also revealed
 that gazelles in the east and west of Zagros Mountains occupy distinct
 niches and that there are apparent areas of disconnection across the
 goitered gazelle suitable range. A complete divergent niche occupation was
 also observed between gazelles of Mongolia and other Asiatic gazelles,
 except for China. Taking the inferences from ENM and morphology together
 with previous genetics results, we conclude that gazelles in the west and
 southwest of Iran may represent G. marica. Also, our combined analyses
 revealed divergence among gazelles of Iran, Central Asia, and
 Mongolia/China. These results may pave the way for future studies and have
 conservation implications particularly for reintroduction/supplementation
 programs.
DOI: 10.25338/b8fh0p
title: Data for: Social behavior, ovary size, and population of origin influence cuticular hydrocarbons in the orchid bee, Euglossa dilemma

description: Cuticular hydrocarbons (CHCs) are waxy compounds on the surface of insects
 that prevent desiccation and frequently serve as chemical signals
 mediating social and mating behaviors. Although their function in eusocial
 species has been heavily investigated, little is known about the evolution
 of CHC-based communication in species with simpler forms of social
 organization lacking specialized castes. Here, we investigate factors
 shaping CHC variation in the orchid bee Euglossa dilemma, which forms
 casteless social groups of 2-3 individuals. We first assess geographic
 variation, examining CHC profiles of males and females from three
 populations. We also consider CHC variation in the sister species,
 Euglossa viridissima, which occurs sympatrically with one population of E.
 dilemma. Next, we consider variation associated with female behavioral
 phases, to test the hypothesis that CHCs reflect ovary size and social
 dominance. We uncover a striking CHC polymorphism in E. dilemma spanning
 populations. In addition, we identify a separate set of CHCs that
 correlate with ovary size, social dominance, and expression of genes
 associated with social behavior, suggesting that CHCs convey reproductive
 and social information in E. dilemma. Together, our results reveal complex
 patterns of variation in which a subset of CHCs reflect the social and
 reproductive status of nestmates.
DOI: 10.5061/dryad.d2547d81f
title: Infection status as the basis for habitat choices in a wild amphibian

description: Animals challenged with disease may select specific habitat conditions
 that help prevent or reduce infection. Whereas pre-infection avoidance of
 habitats with a high risk of disease exposure has been documented in both
 captive and free-ranging animals, evidence of post-infection habitat
 switching to conditions that promote the clearing of infection is limited
 to laboratory experiments. The extent to which wild animals proximately
 modify habitat choices in response to infection status therefore remains
 unclear. We investigated pre-infection behavioral avoidance and
 post-infection habitat switching using wild, radio-tracked boreal toads
 (Anaxyrus boreas boreas) in a population challenged with Batrachochytrium
 dendrobatidis (Bd); a pathogenic fungus responsible for a catastrophic
 panzootic affecting hundreds of amphibian species worldwide. Boreal toads
 did not preemptively avoid microhabitats with conditions conducive to Bd
 growth. Infected individuals, however, selected warmer, more open
 habitats, which were associated with elevated body temperature and the
 subsequent clearing of infection. Our results suggest that disease can
 comprise an important selective pressure on animal habitat and space use.
 Habitat selection models therefore may be greatly improved by including
 variables that quantify infection risk and/or the infection status of
 individuals through time.
DOI: 10.5061/dryad.pnvx0k6k2
title: Data for Analysis of Keystone Predation - trait based or driven by extrinsic processes?

description: Keystone predation can be a determinant of community structure, including
 species diversity, but factors underlying “keystoneness” have been
 minimally explored. Using the system in which the original keystone, the
 sea star Pisaster ochraceus, was discovered, we focused on two potential
 (but overlapping) determinants of keystoneness: intrinsic traits or state
 variables of the species (e.g., size, density), and extrinsic
 environmental parameters (e.g., prey productivity) that may provide
 conditions favorable for keystone predator evolution. Using a
 comparative-experimental approach, with repeated field experiments at
 multiple sites across a variable coastal environment, we tested predation
 rates, or how quickly predators consumed prey, and predation effects, or
 community response to predator presence or absence. We tested five
 hypotheses: (H1) predation rates and effects will vary in space but not
 time; (H2) per population predation rates will vary primarily with
 individual traits and population variables; (HJHH3) per capita predation
 rates will vary only with individual traits; (H4) predation effects will
 vary with traits, variables, and external drivers; and (H5) as predicted
 by the keystone predation hypothesis, diversity will vary unimodally with
 predation pressure. As hypothesized, predation rates differed among sites
 but not over time (H1), and in caging exclusion experiments, predation
 effect varied with both intrinsic and extrinsic factors (H4).
 Unexpectedly, predation rates varied with both intrinsic and extrinsic
 (H2, per population), or only with extrinsic (H3, per capita) factors.
 Further, in large-plot exclusion experiments, predation effect was most
 closely associated with individual traits (contra H4). Finally, taxon
 diversity varied unimodally with proxies of predation pressure (sessile
 prey abundance) and was sensitive to extrinsic factors (mussel growth,
 temperature, and upwelling) (H5). Hence, keystoneness depended on predator
 individual traits, predator population variables, and environmental
 parameters. However, temporal differences in caging experiments suggested
 that environmental characteristics underlying prey dynamics may be
 preeminent. Compared to prior experiments, predation was weaker with low
 prey input compared to periods with high prey input. Collectively, our
 results suggest that keystone predator evolution depends on the
 coalescence of species-specific characteristics, and environmental
 parameters favoring high prey productivity. Our approach may be a model
 for future studies exploring the generality of keystoneness.
description: Data were collected using community surveys, field experiments
 testing predation effects and rates of predation, surveys of sea star
 density, sea star size structure, mussel and barnacle recruitment, mussel
 growth, bottle samples of nutrients and chlorophyll-a, and air and water
 temperature. Analysis used JMP, PRIMER-E, and PERMANOVA.
DOI: 10.15468/dl.xe8z24
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Candolleodendron brachystachyum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 39 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002542-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.vhhmgqnrd
title: Effect of substitution of Al2O3 and B2O3 for SiO2 on the structural and thermodynamic properties of cover glass for liquid crystal display

description: By the substitution of Al2O3 and B2O3 for SiO2 of the glass network
 former, the structural and thermodynamic properties of aluminosilicate
 glass were investigated. Judged by Raman spectra, the bridging vibration
 Si-Ob increased with the Al2O3/SiO2 substitute. And the total non-bridging
 vibration Si-Onb decreased, indicating the enhancement of the structure
 compactness. While for B2O3/SiO2 substitute, the vibration at around
 1010cm-1 and the bridging vibration Si-Ob in Q4 unit both decreased and
 the structure got loosened. Based on the study of the structure of glass,
 the thermodynamic properties such as viscosity, coefficient of the linear
 thermal expansion, high-temperature resistance, strain point, annealing
 point and softening point, as well as density and elastic modulus were
 investigated. With the enhancement of thermodynamic properties
 requirements, the difficulty in industrialized manufacturing was
 increased. In this paper, glass composition of sample 4 was suitable for
 floating process production.
DOI: 10.5061/dryad.95x69p8hh
title: Social contagion of affiliation in female macaques

description: Social contagion of non-interactive behavior is widespread among animals
 including humans. It is thought to facilitate behavioral synchronization
 and consequently group cohesion, coordination, and opportunities for
 social learning. Contagion of interactive behavior - particularly
 affiliation - has received much less attention. Here, we investigated in
 female rhesus macaques (Macaca mulatta) the effect of observing group
 members groom on a subject’s subsequent grooming behavior and the
 potential modulation of contagion by relationship quality and social
 status. We recorded behavior after subjects witnessed a grooming event and
 compared it to behavior in a control condition with the same individuals
 in proximity but in the absence of a stimulus grooming event. Compared to
 the control condition, after observing others groom, females engaged in a
 grooming interaction sooner, and were more likely to be the initiator and
 to take on the active groomer role. Dominance rank of the focal individual
 and more weakly also of the stimulus individuals affected the latency to
 the next grooming interaction of the focal subject. Latency to the next
 grooming interaction decreased with increasing rank of the subject
 potentially reflecting lower social constraints faced by high ranking
 individuals in this highly despotic species. Relationship quality between
 the subject and the stimulus individuals had no effect on latency to
 grooming. Collectively, our findings provide evidence for visual contagion
 of affiliation in rhesus macaques. Future studies should explore the
 systematic variation in contagion of interactive behavior in relation to a
 gradient of social tolerance.
description: uploaded data files: Data file_GLM_dominance
 rank - difference in latency (in seconds) to the next grooming interaction
 the focal was involved in between matched control and post-grooming 
 observations predicted by standardized focal rank and stimulus rank. Data
 from all three study groups. Data file_GLM_relationship
 Quality -difference in latency (in seconds) to the next grooming
 interaction the focal was involved in between matched control and
 post-grooming observations predicted by relationship quality between focal
 animal and stimulus individual. Data from 2 study groups with relationship
 information. Data file_Wilcoxon tests - Data for
 Wilcoxon tests (predictions 1, 5, 6) from 19 focal females.
DOI: 10.5061/dryad.fj6q573s4
title: Data from: NOVOWrap: an automated solution for plastid genome assembly and structure standardization

description: Plastid genomes play an important role in genomics and evolutionary
 biology. Next-generation sequencing has revolutionized plastid genomic
 data acquisition to the point that genome assembly has become a
 bottlenecks for widespread utilization of plastid genome data. To solve
 this problem, we developed an open-source, cross-platform tool known as,
 NOVOWrap, which includes both command-line and graphical interfaces for
 automatically assembling plastid genomes on personal computers. With
 minimal inputs, settings, and user intervention, NOVOWrap can
 automatically assemble plastid genomes, validate results and standardize
 the structure using affordable computer resources. The performance of this
 software has been successfully benchmarked against the plastid genomes of
 11 species belonging to lycopods, gymnosperms, and angiosperms. This
 program is expected to liberate researchers from laborious and cumbersome
 computer manipulations and create reliable and standardized genomic data.
description: 1. Use BarcodeFinder to evalute plastid genomes in NCBI RefSeq
 database; 2. Use NOVOWrap to assembly and generate
 synteny analyses results; 3. Use OGDRAW to visualize
 annotated plastid genomes; 4. Use GraphViz to draw
 unidirectional graph.
DOI: 10.5061/dryad.brv15dv7m
title: Dark septate endophytes and arbuscular mycorrhizal fungi (Paris-morphotype) affect the stable isotope composition of ‘classically’ non-mycorrhizal plants

description: The vast majority of terrestrial plants exchange nutrients with fungal
 partners forming different mycorrhizal types. The minority of plants
 considered as non-mycorrhizal, however, are not necessarily free of any
 fungi, but are frequently colonized by elusive fungal endophytes, such as
 dark septate endophytes (DSE) or fine root endophytes (FRE). While a
 functional role of FRE in improvement of nutrient gain was recently
 elucidated, the function of DSE is still in discussion and was here
 addressed for 36 plant species belonging to the families Equisetaceae,
 Cypereaceae and Caryophyllaceae. Molecular and microscopic staining
 approaches were conducted to verify the presence of DSE in the
 investigated species. Stable isotope natural abundances of the elements
 carbon, nitrogen, hydrogen and oxygen and total nitrogen concentrations
 were analyzed for the respective species of the target plant families and
 accompanying mycorrhizal and non-mycorrhizal (Brassicaceae) plant species.
 Staining approaches confirmed the presence of DSE in all investigated
 species within the families Equisetaceae, Cyperaceae and Caryophyllaceae.
 A co-colonization with Paris-type arbuscular mycorrhiza (AM) was
 occasionally found by staining and molecular approaches in species of the
 Equisetaceae. Species of the Equisetaceae, Cyperaceae and Caryophyllaceae
 were significantly 15N-enriched in comparison to accompanying plants. In
 addition, a significant 13C and 2H enrichment and increased total nitrogen
 concentrations were found for representatives of the Equisetaceae. The
 15N-enrichment found here for representatives of Equisetaceae, Cyperaceae
 and Caryophyllaceae provides evidence for a functional role of the
 ubiquitous DSE fungi. DSE fungi obviously provide access to 15N-enriched
 soil organic compounds probably in exchange for organic carbon compounds
 from plant photosynthesis. As indicated by additional 13C- and
 2H-enrichments, representatives of the Equisetaceae apparently gain
 simultaneously organic carbon compounds from their AM fungi of the
 Paris-morphotype. Thus, species of the Equisetaceae have to be considered
 as partially, or in case of the achlorophyllous fertile Equisetum arvense,
 as fully mycoheterotrophic at least in some stages of their life cycle. So
 far mostly underappreciated fungi classified as DSE are suggested to
 occupy an ecologically relevant role similar to mycorrhizae and the
 occurrence of simultaneous functions of DSE and AM fungi in Equisetaceae
 is proposed.
DOI: 10.5061/dryad.44j0zpcc4
title: Testing for phylogenetic signal in claws suggests great influence of ecology on Caribbean intertidal arthropods (Acari, Oribatida)

description: Claws are common biological attachment devices that can be found in a wide
 variety of animal groups. Their curvature and size are supposed to be
 parameters related to ecological aspects. Mites, known as very small
 arthropods, occupy a wide range of ecological niches and are a perfect
 model system to investigate correlations of claw morphology with ecology.
 There is only one study regarding this question in littoral mites but the
 phylogenetic impact, which plays an important role in the evolution of
 morphological traits, was not tested. We investigated claw shapes of
 different Caribbean populations of five species showing different
 substrate/habitat preferences. We used geometric morphometrics to quantify
 claw shape and tested for phylogenetic signal within this morphological
 trait. Even in closely related populations, we found clear claw shapes for
 hard versus soft substrate, confirming previous findings. Surprisingly, we
 found no phylogenetic signal within the trait, which demonstrates that
 ecology (different surfaces and substrates) has acted as one of the
 primary selective forces in the diversification of claw shapes.
 Considering that the basic claw design may be the same in the majority of
 arthropods, our results have important implications for further
 investigations of claw morphology and its ecological relevance within this
 phylum.