cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/x9iuno
title: 180410_1352.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/7iluqi
title: 171205_1308.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/a9pjif
title: task_results_gains_171205_1110.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/cyk6fs
title: task_results_gains_171205_1441.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/d2bwws
title: 171212_1609.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/4nqlor
title: task_results_gains_171212_1436.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/twlf6p
title: 171205_1609.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/3pkdqf
title: 171212_1436.xls

description: zTree Output for one session
DOI: 10.57745/dpsiag
title: 171114_1538.xls

description: zTree Output for one session
DOI: 10.57745/bfsrmi
title: task_results_gains_171212_1741.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/qgw20t
title: 170526_1627.xls

description: zTree Output for one session
DOI: 10.57745/d8svef
title: 171212_1609.xls

description: :unav
DOI: 10.57745/ioezm3
title: 180529_1415.xls

description: zTree Output for one session
DOI: 10.57745/dztmcg
title: PaymentChoices.tab

description: Aggregated data from all sessions
DOI: 10.57745/faqvua
title: storeCE.tab

description: Aggregation of certainty equivalent when it was elicited.
DOI: 10.6084/m9.figshare.26987743
title: Additional file 1 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 1: Table S1. Repeats masked in the genomes of A. tenebrosa and T. stephensoni.
DOI: 10.6084/m9.figshare.26987743.v1
title: Additional file 1 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 1: Table S1. Repeats masked in the genomes of A. tenebrosa and T. stephensoni.
DOI: 10.6084/m9.figshare.26987746
title: Additional file 2 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 2: Table S2. CAFE was used to identify expanded gene families encoding putative toxinsacross actiniarian superfamilies Actinioidea, Edwardsioidea and Metridioidea. Species: Telmatactis = T. stephensoni; Paraphelliactis = P. xishaensis; Exaiptasia = E. diaphana; Actinia = A. tenebrosa; Nematostella = N. vectensis. Uncharacterised toxin gene families have been designated U# or Z#.
DOI: 10.6084/m9.figshare.26987749.v1
title: Additional file 3 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 3: File S1. Supporting data values for figures. Fig. 2A_I. MCScanX duplication classification. Fig. 2A_II. MCScanX collinear blocks. Fig. 3A. A. tenebrosa SA8 expression matrix. Fig. 3B. T. stephensoni SA8 expression matrix. Fig. 4A. T. stephensoni WGCNA module membership. Fig. 4B. A. tenebrosa WGCNA module membership. Fig. 6. SA8 phylogenetic distance matrix. Fig. 8_Fig. S9. patch clamp electrophysiology measurements.
DOI: 10.6084/m9.figshare.26987749
title: Additional file 3 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 3: File S1. Supporting data values for figures. Fig. 2A_I. MCScanX duplication classification. Fig. 2A_II. MCScanX collinear blocks. Fig. 3A. A. tenebrosa SA8 expression matrix. Fig. 3B. T. stephensoni SA8 expression matrix. Fig. 4A. T. stephensoni WGCNA module membership. Fig. 4B. A. tenebrosa WGCNA module membership. Fig. 6. SA8 phylogenetic distance matrix. Fig. 8_Fig. S9. patch clamp electrophysiology measurements.
DOI: 10.57745/ohggtn
title: globals.tab

description: Aggregated data from all sessions
DOI: 10.57745/zbsizq
title: storeChoices.tab

description: Aggregate data for all sessions.
DOI: 10.6084/m9.figshare.26987764
title: Additional file 8 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 8: Table S3. Direct mass spectrometric characterisation of disulfide linkages in the recombinant SA8 peptide. The main diagnostic pepsin fragments appeared as MS2 precursors with high intensity.
DOI: 10.57745/kd1svl
title: subjects.csv

description: Group together all the data from subjects table in zTree.
DOI: 10.57745/onwtmx
title: README_data.qmd

description: Explanations of the columns for the main data of the choice correspondences.
DOI: 10.6084/m9.figshare.26987677.v1
title: Additional file 16 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 16. Providing NACHT/NB-ARC containing genes domain composition.
DOI: 10.6084/m9.figshare.26987764.v1
title: Additional file 8 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 8: Table S3. Direct mass spectrometric characterisation of disulfide linkages in the recombinant SA8 peptide. The main diagnostic pepsin fragments appeared as MS2 precursors with high intensity.
DOI: 10.6084/m9.figshare.26987782.v1
title: Additional file 14 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 14: File S6. Injection activity assay in Drosophila melanogaster.
DOI: 10.6084/m9.figshare.26987785.v1
title: Additional file 15 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 15: Table S4. Accession numbers for tissue samples of A. tenebrosa and T. stephensoni.
DOI: 10.57745/koagg7
title: session.tab

description: Aggregate data for all sessions
DOI: 10.57745/nja2tg
title: ChoiceCorrespondence.tab

description: Aggregate choice correspondence data. Produced by DataCleaning.qmd.
DOI: 10.6084/m9.figshare.26987782
title: Additional file 14 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 14: File S6. Injection activity assay in Drosophila melanogaster.
DOI: 10.57745/a7abwi
title: README_data.pdf

description: Explanations of the columns for the main data of the choice correspondences.
DOI: 10.57745/gyeskr
title: RA.tab

description: Aggregate data for the elicitation of risk aversion. Obtained with DataCleaning.qmd
DOI: 10.57745/oilysh
title: Ranking.tab

description: Data file used for the experiment, but useless for the reproducibility.
DOI: 10.6084/m9.figshare.26987785
title: Additional file 15 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 15: Table S4. Accession numbers for tissue samples of A. tenebrosa and T. stephensoni.
DOI: 10.57745/ft1x3y
title: summary.tab

description: Aggregate data for all sessions.
DOI: 10.57745/grfngh
title: demographics.tab

description: Aggregated data from all sessions
DOI: 10.57745/bwcfjl
title: 20170124ChoiceCorrespondenceBons.ztt

description: zTree code for the experiment.
DOI: 10.57745/eftx3m
title: 20171114ChoiceCorrespondenceTaches.ztt

description: zTree code for the experiment.
DOI: 10.57745/jfk7ga
title: 20171205ChoiceCorrespondenceTaches.ztt

description: zTree code for the experiment.
DOI: 10.57745/aygbfe
title: 20180410ChoiceFunctionTaches.ztt

description: zTree code for the experiment.
DOI: 10.57745/rz2npq
title: 20180206DistributionChoiceFree.ztt

description: zTree code for the experiment.
DOI: 10.57745/x80cla
title: 20171011ChoiceCorrespondenceTaches.ztt

description: zTree code for the experiment.
DOI: 10.57745/khdpwj
title: 20170502ChoiceCorrespondenceTaches.ztt

description: zTree code for the experiment.
DOI: 10.57745/nyhmpx
title: 20170527ChoiceCorrespondenceTaches.ztt

description: zTree code for the experiment.
DOI: 10.57745/ujxich
title: 20180529ChoiceFunctionTaches.ztt

description: zTree code for the experiment.
DOI: 10.6084/m9.figshare.26987635
title: Additional file 2 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 2. OG significantly amplified in corals vs sea anemones.
DOI: 10.6084/m9.figshare.26987635.v1
title: Additional file 2 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 2. OG significantly amplified in corals vs sea anemones.
DOI: 10.57745/bmkgxx
title: README_Experiments.qmd

description: Source file for the explanation on how the experiment were run.
DOI: 10.57745/fhuk2u
title: 20180206DistributionChoiceFreeLow.ztt

description: zTree code for the experiment.
DOI: 10.57745/qjtdlm
title: README_Experiments.pdf

description: Source file for the explanation on how the experiment were run.
DOI: 10.6084/m9.figshare.26987638
title: Additional file 3 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 3. The top100 Pfam domains exhibiting most significant differential abundance between cnidaria and scleractinian corals.
DOI: 10.6084/m9.figshare.26987638.v1
title: Additional file 3 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 3. The top100 Pfam domains exhibiting most significant differential abundance between cnidaria and scleractinian corals.
DOI: 10.57745/aqggvt
title: EliasTasksTest.exe

description: Tasks used in the Experiment of 2017-05-02
DOI: 10.57745/wjfl8q
title: ParametricLaunch.bat

description: Tasks used in the Experiment of 2017-05-02
DOI: 10.57745/zmtzmr
title: DemoLaunch.bat

description: Launch file for the tasks in the 2017-05-27 sessions.
DOI: 10.6084/m9.figshare.26987641
title: Additional file 4 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 4. Describing OG significantly amplified in robust vs complex clades.
DOI: 10.57745/jsnyk8
title: EliasTasksTest.exe

description: Tasks for the session of 2017-10-11.
DOI: 10.57745/ksundo
title: EliasTasksTest.exe

description: Tasks in the 2017-05-27 sessions.
DOI: 10.57745/lzpswe
title: DemoLaunch.bat

description: Launch script for the tasks.
DOI: 10.6084/m9.figshare.26987641.v1
title: Additional file 4 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 4. Describing OG significantly amplified in robust vs complex clades.
DOI: 10.6084/m9.figshare.26987746.v1
title: Additional file 2 of Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family

description: Additional file 2: Table S2. CAFE was used to identify expanded gene families encoding putative toxinsacross actiniarian superfamilies Actinioidea, Edwardsioidea and Metridioidea. Species: Telmatactis = T. stephensoni; Paraphelliactis = P. xishaensis; Exaiptasia = E. diaphana; Actinia = A. tenebrosa; Nematostella = N. vectensis. Uncharacterised toxin gene families have been designated U# or Z#.
DOI: 10.57745/jxjxhw
title: ParametricLaunch.bat

description: Launch file for the tasks
DOI: 10.57745/ro4xbi
title: ParametricLaunch.bat

description: Launch script for the tasks.
DOI: 10.57745/yzgial
title: EliasTasksTest.exe

description: Tasks for the session of 2017-11-14
DOI: 10.6084/m9.figshare.26987644
title: Additional file 5 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 5. Describing OG significantly amplified in complex vs robust clades.
DOI: 10.6084/m9.figshare.26987644.v1
title: Additional file 5 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 5. Describing OG significantly amplified in complex vs robust clades.
DOI: 10.57745/46ltzr
title: 20170527InstructionsDistribueesPilot2.qmd

description: Source file for the distributed instructions.
DOI: 10.57745/9k07dv
title: EliasTasksTest.exe

description: Tasks for the 2017-12-12 sessions and later.
DOI: 10.57745/vkuyre
title: 20170502InstructionsDistribueesPilot2.qmd

description: Source file for the distributed instructions.
DOI: 10.6084/m9.figshare.26987647
title: Additional file 6 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 6. Describing the top100 Pfam domains exhibiting most significant differential abundance between robust and complex clade corals.
DOI: 10.6084/m9.figshare.26987647.v1
title: Additional file 6 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 6. Describing the top100 Pfam domains exhibiting most significant differential abundance between robust and complex clade corals.
DOI: 10.57745/02gl7h
title: 20180410InstructionsDistribuees.qmd

description: Source file for the distributed instructions.
DOI: 10.57745/68uhnx
title: InstructionsProgrammesTraining.txt

description: :unav
DOI: 10.57745/aw0ov5
title: 20171114InstructionsDistribuees.qmd

description: Source file for the distributed instructions.
DOI: 10.57745/vjt6yh
title: 20171212InstructionsDistribueesTraining.qmd

description: Source file for the distributed instructions.
DOI: 10.57745/8xj2ch
title: 20180206InstructionsDistribueesDistribution.qmd

description: Source file for the distributed instructions.
DOI: 10.57745/mfrezs
title: 20180529InstructionsDistribueesPart2.qmd

description: Source file for the distributed instructions.
DOI: 10.57745/naniqw
title: InstructionsProgramme.txt

description: :unav
DOI: 10.57745/vmxkqi
title: 20171011InstructionsDistribueesPilot3.qmd

description: Source file for the distributed instructions.
DOI: 10.6084/m9.figshare.26987650
title: Additional file 7 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 7. Describing OG significantly amplified in massive vs branched corals.
DOI: 10.6084/m9.figshare.26987650.v1
title: Additional file 7 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 7. Describing OG significantly amplified in massive vs branched corals.
DOI: 10.57745/anlhtg
title: InstructionsLues.txt

description: Read instructions.
DOI: 10.57745/hckknr
title: 20180529InstructionsDistribuees.qmd

description: Source file for the distributed instructions.
DOI: 10.57745/va8p9z
title: 20171212InstructionsDistribueesVague.qmd

description: Source file for the distributed instructions.
DOI: 10.57745/xpqvqm
title: 20170124_InstructionDistribueesPilot1.qmd

description: Source file for the distributed instructions.
DOI: 10.6084/m9.figshare.26987653
title: Additional file 8 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 8. Describing OG significantly amplified in branched vs massive corals.
DOI: 10.6084/m9.figshare.26987653.v1
title: Additional file 8 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 8. Describing OG significantly amplified in branched vs massive corals.
DOI: 10.57745/03jiwd
title: 20171114Instructions.mp4

description: Video instructions for the tasks in the session 2017-11-14 and later.
DOI: 10.57745/6exbfe
title: 20171011Instructions.mp4

description: Video instruction for the tasks in the session 2017-10-11.
DOI: 10.57745/fh1yqv
title: Functions.R

description: Functions used to clean the original data.
DOI: 10.57745/xedg1w
title: 20171212InstructionsDistribuees.qmd

description: Source file for the distributed instructions.
DOI: 10.57745/72oozx
title: Identifiers.tab

description: Identifiers for subjects and sessions, to make the link between the tasks performances and the experiment.
DOI: 10.57745/ec3m3b
title: renv.lock

description: Lock file for R, saves the R and dependencies versions used.
DOI: 10.57745/h1qbbc
title: DataCleaning.qmd

description: Source file to clean the original data and create the choice correspondence data.
DOI: 10.6084/m9.figshare.26987656
title: Additional file 9 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 9. Providing number of genes annotated in TIR containing, NACHT containing and lectin containing OGs.
DOI: 10.6084/m9.figshare.26987656.v1
title: Additional file 9 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 9. Providing number of genes annotated in TIR containing, NACHT containing and lectin containing OGs.
DOI: 10.6084/m9.figshare.26987797
title: Additional file 1 of Epigenetic regulation of human-specific gene expression in the prefrontal cortex

description: Additional file 1: Table S1. Sample information. Table S2. ChIP-seq mapping statistics. Table S3. Normalized read counts of H3K4me3 peaks in human, chimpanzee and macaque PFC used in this study. Table S4. Normalized read counts of H3K27ac peaks in human, chimpanzee and macaque PFC used in this study. Table S5. List of 1175 H3K4me3 peaks with human-specific gain in PFC. Table S6. List of 775 H3K4me3 peaks with human-specific loss in PFC. Table S7. Functional enrichment of genes adjacent to H3K4me3HP gain. Table S8. Functional enrichment of genes adjacent to H3K4me3HP loss. Table S9. List of 483 H3K27ac peaks with human-specific gain in PFC. Table S10. List of 316 H3K27ac peaks with human-specific loss in PFC. Table S11. Functional enrichment of genes adjacent to H3K27acHP gain and loss. Table S12. Strand-specific RNA-seq mapping statistics. Table S13. Raw and normalized read counts in human, chimpanzee and macaque PFC used in this study. Table S14. List of 69 TFs and their target genes with absolute Pearson correlation coefficients &gt; 0.6 and P values &lt; 0.05. Table S15. List of 28 H3K4me3- and two H3K27ac-modifying enzymes.
DOI: 10.6084/m9.figshare.26987797.v1
title: Additional file 1 of Epigenetic regulation of human-specific gene expression in the prefrontal cortex

description: Additional file 1: Table S1. Sample information. Table S2. ChIP-seq mapping statistics. Table S3. Normalized read counts of H3K4me3 peaks in human, chimpanzee and macaque PFC used in this study. Table S4. Normalized read counts of H3K27ac peaks in human, chimpanzee and macaque PFC used in this study. Table S5. List of 1175 H3K4me3 peaks with human-specific gain in PFC. Table S6. List of 775 H3K4me3 peaks with human-specific loss in PFC. Table S7. Functional enrichment of genes adjacent to H3K4me3HP gain. Table S8. Functional enrichment of genes adjacent to H3K4me3HP loss. Table S9. List of 483 H3K27ac peaks with human-specific gain in PFC. Table S10. List of 316 H3K27ac peaks with human-specific loss in PFC. Table S11. Functional enrichment of genes adjacent to H3K27acHP gain and loss. Table S12. Strand-specific RNA-seq mapping statistics. Table S13. Raw and normalized read counts in human, chimpanzee and macaque PFC used in this study. Table S14. List of 69 TFs and their target genes with absolute Pearson correlation coefficients &gt; 0.6 and P values &lt; 0.05. Table S15. List of 28 H3K4me3- and two H3K27ac-modifying enzymes.
DOI: 10.6084/m9.figshare.26987659.v1
title: Additional file 10 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 10. Describing the 5 most abundant domains (IPR) identified with interProScan on 25 Cnidarian species, for each OG.
DOI: 10.6084/m9.figshare.26987659
title: Additional file 10 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 10. Describing the 5 most abundant domains (IPR) identified with interProScan on 25 Cnidarian species, for each OG.
DOI: 10.6084/m9.figshare.26987662
title: Additional file 11 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 11. Describing the 5 most abundant best BlastP Hits on nrprot for Pocillopora cf. effusa proteins in each OG.
DOI: 10.6084/m9.figshare.26987662.v1
title: Additional file 11 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 11. Describing the 5 most abundant best BlastP Hits on nrprot for Pocillopora cf. effusa proteins in each OG.
DOI: 10.6084/m9.figshare.26987665
title: Additional file 12 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 12. Describing the 5 most abundant best BlastP Hits on nrprot for Porites lobata proteins in each OG.
DOI: 10.6084/m9.figshare.26987665.v1
title: Additional file 12 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 12. Describing the 5 most abundant best BlastP Hits on nrprot for Porites lobata proteins in each OG.
DOI: 10.6084/m9.figshare.26987806
title: Additional file 2 of Autophagy modulators influence the content of important signalling molecules in PS-positive extracellular vesicles

description: Additional file 2: Table S1. Changes in the representation of PS-EVs proteins caused by autophagy modulators.
DOI: 10.6084/m9.figshare.26987806.v1
title: Additional file 2 of Autophagy modulators influence the content of important signalling molecules in PS-positive extracellular vesicles

description: Additional file 2: Table S1. Changes in the representation of PS-EVs proteins caused by autophagy modulators.
DOI: 10.6084/m9.figshare.26987668
title: Additional file 13 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 13. Fasta file providing consensus sequences of 705 monocopy OGs found in all corals.
DOI: 10.6084/m9.figshare.26987668.v1
title: Additional file 13 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 13. Fasta file providing consensus sequences of 705 monocopy OGs found in all corals.
DOI: 10.6084/m9.figshare.26987671
title: Additional file 14 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 14. Containing the heatmap data used for Figure 7C, (Z-scores of mean TPM per OG: rows= genes (OG), columns=Tara Pacific Islands).
DOI: 10.6084/m9.figshare.26987671.v1
title: Additional file 14 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 14. Containing the heatmap data used for Figure 7C, (Z-scores of mean TPM per OG: rows= genes (OG), columns=Tara Pacific Islands).
DOI: 10.6084/m9.figshare.26987674
title: Additional file 15 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 15. ProvidingTIR containing genes domain composition.
DOI: 10.6084/m9.figshare.26987674.v1
title: Additional file 15 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 15. ProvidingTIR containing genes domain composition.
DOI: 10.6084/m9.figshare.26987677
title: Additional file 16 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 16. Providing NACHT/NB-ARC containing genes domain composition.
DOI: 10.6084/m9.figshare.26987680
title: Additional file 17 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 17. Providing NACHT/NB-ARC containing genes with description of N-terminal, central and C-terminal domains.
DOI: 10.6084/m9.figshare.26987680.v1
title: Additional file 17 of Pervasive tandem duplications and convergent evolution shape coral genomes

description: Additional file 17. Providing NACHT/NB-ARC containing genes with description of N-terminal, central and C-terminal domains.