cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19325870
title: VPA Data.xlsx

description: Data of volumetric estimations of VPA volumes and VPA neuron soma volumes.<br>
DOI: 10.13020/t9bg-vr86
title: Maximum carbon assimilation model for understory wood plants growing at Bagley Nature Area in Duluth, MN 

description: These data were collected and analyzed for a project comparing the leaf phenology, carbon gain, growth, and freezing susceptibility of invasive and native species. Maximum seasonal carbon assimilation was modeled for six plants per eight species growing in a 50-year-old mixed forest. The model is based on understory light availability on sunny days, carbon dioxide assimilation rates, and leaf area adjusted in the spring for expanding leaves and in the fall for senescing leaves.
description: There is one readme file, one R file, and six CSV files. The R file contains code modeling maximum seasonal carbon assimilation for understory shrubs. All six CSV files are required inputs for the R code and contain data that are referenced throughout the model. The CSV files include data on leaf phenology, photosynthetic light response curves, and understory light.
DOI: 10.13020/944x-0y67
title: Data for Doping- and Strain-Dependent Electrolyte-Gate-Induced Perovskite to Brownmillerite Transformation in Epitaxial La1−xSrxCoO3−δ Films

description: Electrolyte-gate-induced perovskite to brownmillerite transformations in La1-xSrxCoO3-d (LSCO) has been shown to be a facile technique to toggle between disparate electronic and magnetic phases in a single perovskite oxide thin film. Here we study the doping (Sr concentration), and strain (epitaxially imparted from the substrate) dependence of this topotactic transformation in LSCO thin films across almost the entire phase diagram. This repository page serves as a place to store the Figure plots and raw data from the cited publication.
description: The attached files and data sets represent the actual published Figures (in .tif format) and the corresponding x,y data pulled from each plot in the Figures (in .xlsx format). The data includes electronic transport data from in situ ion-gel-gating experiments, specular synchrotron x-ray diffraction (SXRD) data from operando gating experiments (Argonne National Lab), and summarized parameters extracted from each. Significantly, threshold voltage vs. Sr doping, extracted from electronic transport and SXRD for films on different substrates (different strain states, compressive vs tensile) and average Co valence vs. gate voltage, extracted from low temperature transport and magnetometry data, and single crystal literature values (see main text for full descriptions)
DOI: 10.13020/zvcg-0m25
title: Data and code supporting: Simulations corroborate telegraph model predictions for the extension distributions of nanochannel confined DNA 

description: Hairpins in the conformation of DNA confined in nanochannels close to their persistence length cause the distribution of their fractional extensions to be heavily left skewed. A recent theory rationalizes these skewed distributions using a correlated telegraph process, which can be solved exactly in the asymptotic limit of small but frequent hairpin formation. Pruned-enriched Rosenbluth method simulations of the fractional extension distribution for a channel-confined wormlike chain confirm the predictions of the telegraph model. Remarkably, the asymptotic result of the telegraph model remains robust well outside the asymptotic limit. As a result, the approximations in the theory required to map it to the polymer model and solve it in the asymptotic limit are not the source of discrepancies between the predictions of the telegraph model and experimental distributions of the extensions of DNA during genome mapping. The agreement between theory and simulations motivates future work to determine the source of the remaining discrepancies between the predictions of the telegraph model and experimental distributions of the extensions of DNA in nanochannels used for genome mapping.
description: Hairpins in the conformation of DNA confined in nanochannels close to their persistence length cause the distribution of their fractional
extensions to be heavily left skewed. A recent theory rationalizes these skewed distributions using a correlated telegraph process, which can
be solved exactly in the asymptotic limit of small but frequent hairpin formation. Pruned-enriched Rosenbluth method simulations of the
fractional extension distribution for a channel-confined wormlike chain confirm the predictions of the telegraph model. Remarkably, the
asymptotic result of the telegraph model remains robust well outside the asymptotic limit. As a result, the approximations in the theory
required to map it to the polymer model and solve it in the asymptotic limit are not the source of discrepancies between the predictions of
the telegraph model and experimental distributions of the extensions of DNA during genome mapping. The agreement between theory and
simulations motivates future work to determine the source of the remaining discrepancies between the predictions of the telegraph model
and experimental distributions of the extensions of DNA in nanochannels used for genome mapping.
DOI: 10.13020/zqxg-jf78
title: Experimental data associated with the study "The Ixodes scapularis symbiont Rickettsia buchneri inhibits growth of pathogenic Rickettsiaceae in tick cells: implications for vector competence"

description: These experimental data are made available as part of the study "The Ixodes scapularis symbiont Rickettsia buchneri inhibits growth of pathogenic Rickettsiaceae in tick cells: implications for vector competence" published in Frontiers in Veterinary Science.
Abstract: The blacklegged tick Ixodes scapularis is a vector of pathogens of medical and veterinary importance in North America. Unlike other important human-biting Ixodes species however, this tick does not transmit pathogenic Rickettsia species, instead hosting a rickettsial endosymbiont, Rickettsia buchneri. A gene cluster encoding aminoglycoside antibiotic biosynthesis machinery has been identified in R. buchneri, which is not present in other rickettsiae, and therefore antibiotic production might represent a mechanism by which the endosymbiont is able to exclude pathogenic Rickettsia species from I. scapularis. This study identifies a second antibiotic cluster in R. buchneri with genes similar to polyketide/non-ribosomal peptide synthesis genes. Using cell culture experiments we provide evidence that infection of tick cells with R. buchneri, even at low rates, significantly reduces the ability of the pathogens Anaplasma phagocytophilum and R. parkeri to infect and replicate in cells, whereas the presence of low-pathogenic R. amblyommatis or the endosymbiotic R. peacockii in cells only partially reduced infection by R. parkeri. This research suggests a potential role of the endosymbiont in preventing other rickettsiae from colonizing I. scapularis and/or being transmitted transovarially. Whilst a link between the observed inhibition and antibiotic production is yet to be confirmed, this work contributes further to our understanding of rickettsial competition and how endosymbionts might alter vector competence by preventing colonization of the tick by pathogens.
description: Spreadsheets containing raw data from fluorescent plate reader experiments detailed in the research paper.
DOI: 10.13020/7c7w-9m80
title:  An Analysis of Microlitter and Microplastics from Lake Superior Beach Sand and Surface-Water 

description: An Analysis of Microlitter and Microplastics from Lake Superior Beach Sand and Surface-Water.  This report describes work done in 2018 to evaluate the presence/absence of microplastics within and near the Apostle Islands National Lakeshore. We wish to archive the information for preservation and availability for other interested parties.
DOI: 10.13020/xjv7-s394
title: Supporting data for "3D printed patient-specific aortic root models with internal sensors for minimally invasive applications"

description: Minimally invasive surgeries have numerous advantages, yet complications may arise from limited knowledge about the anatomical site targeted for the delivery of therapy. Transcatheter aortic valve replacement (TAVR) is a minimally invasive procedure for treating aortic stenosis. Here, we demonstrate multi-material 3D printing of patient-specific soft aortic root models with internally-integrated electronic sensor arrays that can augment testing for TAVR preprocedural planning. We evaluated the efficacies of the models by comparing their geometric fidelities with postoperative data from patients, as well as their in vitro hemodynamic performances in cases with and without leaflet calcifications. Furthermore, we uniquely demonstrated that internal sensor arrays can facilitate the optimization of bioprosthetic valve selections and in vitro placements via mapping of the pressures applied on the critical regions of the aortic anatomies. Such models may pave new avenues for mitigating the risks of postoperative complications, as well as facilitating the development of next-generation medical devices.
description: The data set includes the experimental data and the code files for 3D printed patient-specific aortic root models with internal sensors for minimally invasive
applications.
DOI: 10.13020/d6696n
title: Sequence-Dependent Persistence Length of Long DNA

description: Using a high-throughput genome-mapping approach, we obtained circa 50 million measurements of the
extension of internal human DNA segments in a 41 nm × 41 nm nanochannel. The underlying DNA
sequences, obtained by mapping to the reference human genome, are 2.5–393 kilobase pairs long and
contain percent GC contents between 32.5% and 60%. Using Odijk’s theory for a channel-confined
wormlike chain, these data reveal that the DNA persistence length increases by almost 20% as the percent
GC content increases. The increased persistence length is rationalized by a model, containing no adjustable
parameters, that treats the DNA as a statistical terpolymer with a sequence-dependent intrinsic persistence
length and a sequence-independent electrostatic persistence length.
description: The data provided here contains experimental results, all Matlab codes for statistical analysis and for generating figures in the paper.
DOI: 10.13020/d6r088
title: Topography, image, and flow model data for experimental density currents, St. Anthony Falls Laboratory, 2015-2017

description: Submarine channels convey turbidity currents, the primary means for distributing sand and coarser sediments to the deep ocean. In some cases, submarine channels have been shown to braid, similarly to rivers. Yet the strength of the analogy between the subaerial and submarine braided channels is incompletely understood. This data set includes topography, image, and flow model data for six experiments with subaqueous density currents and two experiments with subaerial rivers. The experiments were conducted to quantify (1) submarine channel kinematics, and (2) the responses of channel and bar geometry to subaerial versus submarine basin conditions, inlet conditions, and the ratio of flow-to-sediment discharge (Qw/Qs).The data set accompanies a 2018 publication in the journal Sedimentology.
description: This data set includes topography and image data for laboratory experiments involving turbidity currents and rivers, conducted at St. Anthony Falls Laboratory, University of Minnesota, in 2015-2017.
DOI: 10.13020/4yx0-dw10
title: Reconciling Print-Size and Display-Size Constraints on Reading (Minnesota Lab for Low-Vision Research, 2020)

description: The data includes both normally-sighted (Times and Courier groups) and low-vision subjects' reading performance. The main dependent variable in this dataset is reading speed. Reading speed measure is indicated by how many characters per minute were read. In addition, two independent variables with their different levels are provided. These variables are display format (laptop, tablet, phone) and blur condition for normally-sighted participants (normal-viewing condition and viewing under artificial blur through goggles).
description: Detailed documentation is uploaded along with the data files.
DOI: 10.6084/m9.figshare.19325168
title: Physical Activity Patterns of EMTs and Paramedics Who Work on an Emergency Transport Ambulance in Rural Colorado

description: SPSS and CSV data sets showing demographic and inferential outcomes for the research article titled, "Physical Activity Patterns of EMTs and Paramedics Who Work on an Emergency Transport Ambulance in Rural Colorado", by Chris Schierer
DOI: 10.6084/m9.figshare.19325168.v1
title: Physical Activity Patterns of EMTs and Paramedics Who Work on an Emergency Transport Ambulance in Rural Colorado

description: SPSS and CSV data sets showing demographic and inferential outcomes for the research article titled, "Physical Activity Patterns of EMTs and Paramedics Who Work on an Emergency Transport Ambulance in Rural Colorado", by Chris Schierer
DOI: 10.5281/zenodo.6338761
title: Literature Review for the work "Understanding the Outcomes of Customer-Facing In-Store Technology: A Structured Literature Review and Integrative Framework"

description: Dataset for the structured literature proposed in the work titled "Understanding the Outcomes of Customer-Facing In-Store Technology: A Structured Literature Review and Integrative Framework" (unpublished).
DOI: 10.5281/zenodo.6338760
title: Literature Review for the work "Understanding the Outcomes of Customer-Facing In-Store Technology: A Structured Literature Review and Integrative Framework"

description: Dataset for the structured literature proposed in the work titled "Understanding the Outcomes of Customer-Facing In-Store Technology: A Structured Literature Review and Integrative Framework" (unpublished).
DOI: 10.5281/zenodo.6338403
title: hlb-1 behavioural phenotype dataset and associated metadata

description: This deposition contains the supporting dataset for the article: 'Bi-allelic loss-of-function variants in <em>PPFIBP1</em> cause a neurodevelopmental disorder with microcephaly, epilepsy and periventricular calcifications'
DOI: 10.5281/zenodo.6338402
title: hlb-1 behavioural phenotype dataset and associated metadata

description: This deposition contains the supporting dataset for the article: 'Bi-allelic loss-of-function variants in <em>PPFIBP1</em> cause a neurodevelopmental disorder with microcephaly, epilepsy and periventricular calcifications'
DOI: 10.5517/ccdc.csd.cc28rfdw
title: CCDC 2107888: Experimental Crystal Structure Determination

description: Related Article: Chung-Kai Chang, Hyun Jung Yu, Hui won Jang, Ting-Hsiang Hung, Chung-Kai Chang, Jihan Kim, Jong Suk Lee, and Dun-Yen Kang|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc1mvz7p
title: CCDC 1515473: Experimental Crystal Structure Determination

description: Related Article: Naushad Ahmed, Kamal Uddin Ansari|2022|Dalton Trans.|51|4122|doi:10.1039/D1DT03573H
DOI: 10.5517/ccdc.csd.cc1mvz8q
title: CCDC 1515474: Experimental Crystal Structure Determination

description: Related Article: Naushad Ahmed, Kamal Uddin Ansari|2022|Dalton Trans.|51|4122|doi:10.1039/D1DT03573H
DOI: 10.5517/ccdc.csd.cc1mvz6n
title: CCDC 1515472: Experimental Crystal Structure Determination

description: Related Article: Naushad Ahmed, Kamal Uddin Ansari|2022|Dalton Trans.|51|4122|doi:10.1039/D1DT03573H
DOI: 10.5281/zenodo.6338797
title: Neurochemical and cognitive changes precede structural abnormalities in the TgF344-AD rat model

description: Raw data for manuscript accepted in Brain Communications, awaiting official publication. All datasets contain subject information and modality-specific data. Data was acquired longitudinally at four timepoints from hemizygous TgF344-AD rats (transgenic AD model bred on a Fischer 344 background) and wildtype littermates. 1) Barnes Maze probe data. Probe data acquired 48 hours after last training trial. 2) Magnetic Resonance Spectroscopy data: absolute concentrations are provided, as well as relative to total creatine. 3) Magnetic Resonance Imaging data: absolute brain volumes generated from absolute jacobians. "Brain-size-corrected" volumes are referred to as "relative" volumes and are generated from relative jacobians.
description: This research was supported by the Canadian Institutes of Health Research (PJT-148751) and the Fonds de la Recherche en Santé du Québec (Chercheur boursiers # 0000035275). C.F.F. is supported by funding provided by McGill University's Faculty of Medicine Internal Studentship and Healthy Brains for Healthy Lives Doctoral Fellowship.
DOI: 10.5281/zenodo.6338796
title: Neurochemical and cognitive changes precede structural abnormalities in the TgF344-AD rat model

description: Raw data for manuscript accepted in Brain Communications, awaiting official publication. All datasets contain subject information and modality-specific data. Data was acquired longitudinally at four timepoints from hemizygous TgF344-AD rats (transgenic AD model bred on a Fischer 344 background) and wildtype littermates. 1) Barnes Maze probe data. Probe data acquired 48 hours after last training trial. 2) Magnetic Resonance Spectroscopy data: absolute concentrations are provided, as well as relative to total creatine. 3) Magnetic Resonance Imaging data: absolute brain volumes generated from absolute jacobians. "Brain-size-corrected" volumes are referred to as "relative" volumes and are generated from relative jacobians.
description: This research was supported by the Canadian Institutes of Health Research (PJT-148751) and the Fonds de la Recherche en Santé du Québec (Chercheur boursiers # 0000035275). C.F.F. is supported by funding provided by McGill University's Faculty of Medicine Internal Studentship and Healthy Brains for Healthy Lives Doctoral Fellowship.
DOI: 10.3886/e143541v1-111520
title: Code for: Does Race Matter for Police Use of Force? Evidence from 911 Calls

description: Data and Code for Does Race Matter for Police Use of Force? Evidence from 911 Calls <br><br>This paper examines race and police use of force using data on 1.6 million 911 calls in two cities, neither of which allows for discretion in officer dispatch. Results indicate white officers increase force much more than minority officers when dispatched to more minority neighborhoods. Estimates indicate black (Hispanic) civilians are 55 (75) percent more likely to experience any force, and five times as likely to experience a police shooting, compared to if white officers scaled up force similarly to minority officers. Additionally, 14 percent of white officers use excess force in black neighborhoods relative to our statistical benchmark.<br>
DOI: 10.5281/zenodo.6338803
title: Processed data from Repair-seq screens of prime editing of point mutations

description: Processed data from Repair-seq screens of prime editing of point mutations.
description: Fixes some areas of notebooks that accidentally depended on details of the installation environment.
DOI: 10.5281/zenodo.5551032
title: Processed data from Repair-seq screens of prime editing of point mutations

description: Processed data from Repair-seq screens of prime editing of point mutations.
description: Fixes some areas of notebooks that accidentally depended on details of the installation environment.
DOI: 10.5281/zenodo.5555288
title: Processed data from Repair-seq screens of double-strand breaks

description: Processed data from Repair-seq screens of double-strand breaks induced by SpCas9 and AsCas12a in the presence or absence of oligonucleotide homology donors.
DOI: 10.5281/zenodo.5555287
title: Processed data from Repair-seq screens of double-strand breaks

description: Processed data from Repair-seq screens of double-strand breaks induced by SpCas9 and AsCas12a in the presence or absence of oligonucleotide homology donors.
DOI: 10.15468/dl.ramdb3
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stemonoporus kanneliyensis Kosterm."
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117177-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywqu6d
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sympetalandra densiflora (Elmer) Steenis"
 ]
}

 The dataset includes 66 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117178-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rww9t
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tabernaemontana cerifera Pancher & Sebert"
 ]
}

 The dataset includes 310 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117179-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qv6zze
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syzygium balgooyi Brambach, Byng & Culmsee"
 ]
}

 The dataset includes 56 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117180-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfxtfk
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spiniluma oxyacantha (Baill.) Aubrév."
 ]
}

 The dataset includes 56 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117181-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hpd9qt
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stemonoporus laevifolius Kosterm."
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117182-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fy35mw
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sympetalandra hildebrandii Steenis"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117183-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hynzrm
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syzygium balsameum (Wight) Wall. ex Walp."
 ]
}

 The dataset includes 198 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117184-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sdrzz
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spiraea adiantoides Businský"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117186-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.