cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.f45gh6s.1/3.1
title: Raw data from Experiment 2 (part 1 of 4)

description: This zip file is 1 of 4 files containing the Avida raw data output for Experiment 2. The data from 225 out of 900 replicates is stored in individual folders. In addition, the zip file contains a folder "Experiment_configuration_files" with the files necessary to configure Avida to recreate this experiment.
DOI: 10.5061/dryad.f45gh6s.1/4.1
title: Raw data from Experiment 2 (part 2 of 4)

description: This zip file is 1 of 4 files containing the Avida raw data output for Experiment 2. The data from 225 out of 900 replicates is stored in individual folders.
DOI: 10.5061/dryad.f45gh6s.2/10.2
title: R scripts for plotting figures and performing statistical analysis

description: This zip file contains the R scripts used to plot figures 3, 4, 5, S9 and S19, and to perform the statistical calculations presented in the paper.
DOI: 10.5061/dryad.f45gh6s.2/11.2
title: Selected organisms algorithms

description: This zip files contain the annotated assembly code of three organisms from a single lineage from Experiment 2. The three organisms are Error Recoverer 2, First Learner, and Final Organism mentioned in the Supplementary Information. The zip file also contains figure S19.
DOI: 10.5061/dryad.f45gh6s.2/12.2
title: Video "The Evolutionary Origin of Associative Learning"

description: Video with the animated path of organisms from a single lineage from Experiment 2, showing different stages in the evolution of behavior.
DOI: 10.5061/dryad.f45gh6s.2/13.2
title: Supplementary Information
DOI: 10.17632/2w9dbdx2j2.1
title: Data for: Co-Optima Fuels Combustion: A comprehensive Experimental Investigation of Prenol Isomers

description: This is the supporting experimental data
DOI: 10.17632/36g56m2v99.2
title: Data for Socioeconomic determinants of urban fire risk: A city-wide analysis of 283 Chinese cities from 2013 to 2016

description: This dataset contains socioeconomic data derived from China City Statistical Yearbook and urban fire risk data derived from China Fire Yearbook, and the name of the specific statistical item is consistent with the name in the yearbook.
DOI: 10.17632/y976xcbh7t.1
title: Data for: Sputtering of Water Ice by keV Electrons

description: The data from the figures are given: Figure 3: Y vs. Electron flux Figure 4: Y vs. Areal Mass Figure 5: Y vs. S_e and E
DOI: 10.17632/y976xcbh7t.2
title: Data for: Sputtering of Water Ice by keV Electrons

description: The data from the figures are given: Figure 3: Y vs. Electron flux Figure 4: Y vs. Areal Mass Figure 5: Y vs. S_e and E
DOI: 10.17632/zv7kwhhrn5.1
title: Mechanical properties of composite coal and high-strength/large deformation oil shale samples

description: We have provided the data of the paper "Mechanical properties of composite coal and high-strength/large deformation oil shale samples". They includ the test data of single standard oil shale and coal samples, oil shale-coal composite samples.
DOI: 10.17632/zv7kwhhrn5.2
title: Mechanical properties of composite coal and high-strength/large deformation oil shale samples

description: We have provided the data of the paper "Mechanical properties of composite coal and high-strength/large deformation oil shale samples". They includ the test data of single standard oil shale and coal samples, oil shale-coal composite samples.
DOI: 10.17632/zv7kwhhrn5.3
title: Mechanical properties of composite coal and high-strength/large deformation oil shale samples

description: We have provided the data of the paper "Mechanical properties of composite coal and high-strength/large deformation oil shale samples". They includ the test data of single standard oil shale and coal samples, oil shale-coal composite samples.
DOI: 10.5061/dryad.1nn0206/11
title: 11_SNP_data_Poso_Oryzias_Adrianichthys_92ind

description: SNPs data in vcf of the three species of Poso Oryzias, O. soerotoi, and two species of Poso Adrianichthys
DOI: 10.5061/dryad.1nn0206/12
title: 12_ND2_cytb_Poso_Oryzias

description: Mitochondrial ND2 and cytb sequences of the three species of Poso Oryzias and their outgroup O. soerotoi
DOI: 10.5061/dryad.25pp406/1
title: Knockdown dataset

description: Observational data of two knockdown events as well as oviposition events following these knockdowns
DOI: 10.5061/dryad.33bp0m3/1
title: Descrition of all samples of Cytisus scoparius

description: All samples used in the study, with information on their coordinates, the year and country they were collected in and their chloroplast haplotype.
DOI: 10.5061/dryad.33bp0m3/2
title: The 20 different chloroplast haplotype sequences

description: The five regions were concatenated, single nuclear repeats were coded with '?' and codes for the indels were added at the end.
DOI: 10.5061/dryad.33bp0m3/3
title: 36 nuclear SNP marker

description: The 36 nuclear sequences used for SNP calling in MassArray (AGENA Bioscience, San Diego, CA, United States).
DOI: 10.5061/dryad.7254t7d/4
title: Interactions between recombinant chitinases and bacteria
DOI: 10.5061/dryad.7254t7d/5
title: Interactions between plant physical defenses and chitinases
DOI: 10.5061/dryad.7254t7d/6
title: Impact of bacteiral injection on growth of fall armyworom
DOI: 10.5061/dryad.7254t7d/7
title: Hemolymph colony forming units for fall armyworm

description: Bacterial colony forming units (per uL) in response to different feeding substrates.
DOI: 10.5061/dryad.90qg722/32
title: T.raw

description: 16s rRNA
DOI: 10.5061/dryad.90qg722/33
title: Td.raw

description: 16s rRNA
DOI: 10.5061/dryad.90qg722/34
title: otu_table.genus.relative

description: OTU_genus
DOI: 10.5061/dryad.90qg722/35
title: otu_table.phyla.relative

description: OTU_Phyla
DOI: 10.5061/dryad.90qg722/36
title: otu_table.relative
DOI: 10.5061/dryad.90qg722/37
title: otu_table_group.genus.relative

description: OTU_group_genus
DOI: 10.5061/dryad.90qg722/38
title: otu_table_group.phyla.relative

description: OTU_group_phyla
DOI: 10.5061/dryad.90qg722/39
title: otu_table_group.relative
DOI: 10.5061/dryad.90qg722/40
title: otu_table.g10.relative.tran
DOI: 10.5061/dryad.90qg722/41
title: otu_table.p10.relative.tran
DOI: 10.5061/dryad.d4485db/1
title: RSOS-190260--Raw Data

description: Table 1  Gene expression levels of BaPDS1 and BaPDS2 under light and phytohormone treatments
DOI: 10.5061/dryad.f45gh6s.1/10.1
title: R scripts for plotting figures and performing statistical analysis

description: This zip file contains the R scripts used to plot figures 3, 4, 5, S9 and S19, and to perform the statistical calculations presented in the paper.
DOI: 10.5061/dryad.f45gh6s.1/11.1
title: Selected organisms algorithms

description: This zip files contain the annotated assembly code of three organisms from a single lineage from Experiment 2. The three organisms are Error Recoverer 2, First Learner, and Final Organism mentioned in the Supplementary Information. The zip file also contains figure S19.
DOI: 10.5061/dryad.f45gh6s.1/12.1
title: Video "The Evolutionary Origin of Associative Learning"

description: Video with the animated path of organisms from a single lineage from Experiment 2, showing different stages in the evolution of behavior.
DOI: 10.5061/dryad.f45gh6s.1/13.1
title: Supplementary Information
DOI: 10.5061/dryad.f45gh6s.1/5.1
title: Raw data from Experiment 2 (part 3 of 4)

description: This zip file is 1 of 4 files containing the Avida raw data output for Experiment 2. The data from 225 out of 900 replicates is stored in individual folders.
DOI: 10.5061/dryad.f45gh6s.1/6.1
title: Raw data from Experiment 2 (part 4 of 4)

description: This zip file is 1 of 4 files containing the Avida raw data output for Experiment 2. The data from 225 out of 900 replicates is stored in individual folders. In addition, the zip file contains a folder "Test_Environments" with two additional environment configuration files used for evaluating an individual organism's performance.
DOI: 10.5061/dryad.f45gh6s.1/7.1
title: Raw data from the Preliminary Experiment

description: This zip file contains the Avida raw data output for the Preliminary Experiment. The data is divided in four folders according to the experimental environment (treatment): Nutrient Cued, One Fixed Turn, Random Start, and Two Fixed Turns. Under a given environment folder the data from each replicate is stored in individual sub-folders. In addition, each environment folder contains a sub-folder "Experiment_configuration_files" with the files necessary to configure Avida to recreate the particular experiment.
DOI: 10.5061/dryad.f45gh6s.1/8.1
title: Raw data from Follow Up Experiment

description: This zip file contains the Avida raw data output for the Follow Up Experiment. The data is divided in 200 folders, one for each replicate. In addition, the zip file contains a folder "Experiment_configuration_files" with the files necessary to configure Avida to recreate this experiment.
DOI: 10.5061/dryad.f45gh6s.1/9.1
title: Avida Draw - organism's path plotting tool

description: This zip file contains the software Avida Draw, written in Python and used to plot the organisms' path in the arena. It saves .EPS images of both the arena and the organism's final path.
DOI: 10.5061/dryad.ms12t45/1
title: Selmoni et al_Histology

description: Histological analyses of gonad development over 5 time points in grayling (Thymallus thymallus) exposed or not to 17α-ethinylestradiol (EE2) and/or to Pseudomonas fluorescens (PF). The table also provides the total lengths of the fish and the genetic sex of individuals sampled at the last two time points.
DOI: 10.5061/dryad.nj2mg77/1
title: Input Matrices

description: Data Input matrices used for all analyses conducted in this study (COI, UCE, and SNP data).
DOI: 10.5061/dryad.nj2mg77/3
title: UCE alignments 70% taxon coverage

description: Individual UCE locus alignments included in the 70% taxon coverage dataset
DOI: 10.5061/dryad.nj2mg77/4
title: Phylogenies

description: Resulting tree files for the COI and UCE 70% taxon coverage analyses.
DOI: 10.17632/27c4tppmww.3
title: An extensional collapse model for the Lhasa–Qiangtang orogen in central Tibet

description: This dataset contains Zircon U–Pb geochronological data, Zircon Hf isotope data and geochemical data of multi-stage magmatic rocks used to study the late evolution of the Lhasa–Qiangtang orogen in central Tibet
DOI: 10.17632/522hgdgbc6.1
title: Data for: Changes along the Yiluo River influenced the emergence of the first urban center at the Erlitou Site, Central Plains of China

description: Table S1 (Supplementary Table). Lithostratigraphic and archaeostratigraphic descriptions of the 49 sections in Luoyang Basin.
DOI: 10.17632/dp66gztfbm.1
title: Data for: Is "expanded austenite" really a solid solution? Mossbauer observation of an annealed AISI 316L nitrided sample
DOI: 10.17632/fymfgp4874.1
title: Data for: A 4 Ga record of granitic heat production: Implications for geodynamic evolution and crustal composition of the early Earth

description: Geochemistry of granites over the past 4.0 Ga and estimates of geophysical properties estimated from geochemistry.
DOI: 10.17632/tmp5gcb6n6.1
title: Data for: Fly ash as low cost and environmentally friendly filler and its effect on the properties of mix asphalt

description: this document shows the standard equations used in the study which are not presented in the text.
DOI: 10.17632/tp5sp4gcd5.1
title: Data for: Update (1.1) to ANDURIL — A MATLAB toolbox for ANalysis and Decisions with UnceRtaInty: Learning from expert judgments

description: Expert Judgment data which are used in several publications and on which the software validated
DOI: 10.17632/vxk986khwv.1
title: Data for: A concerted systems biology analysis of aromatic metabolism in Rhodococcus opacus PD630

description: Flux Analysis Raw Data
DOI: 10.25952/5d687c3133212
title: Interactions between two species of recently-sympatric invasive honeybees: Apis cerana induces aggression in Apis mellifera during foraging

description: Honeybees Apis mellifera (European honeybee) and Apis cerana (Asian honeybee) are cosmopolitan, having colonized continents beyond their natural ranges. In tropical Australia, these alien species have recently become sympatric. The environmental and economic impacts of these species when in sympatry remain to be seen; however, any interspecific competition may be of significance. We examined conspecific and heterospecific interactions between honeybees foraging at the nectar- and pollen-providing flowers of Antipogon leptopus (Polygonaceae). We cross-classified 554 encounters by three variables; incoming bee species, resident bee species, and one of four potential responses: (1) incoming defers to resident; (2) incoming procures the flower from resident; (3) incoming and resident share the flower; or (4) both incoming and resident abandon the flower. We also measured aggression and foraging rates of workers at flowers. Both species visited similar numbers of flowers in a foraging bout and spent similar foraging times on individual flowers. Incoming A. mellifera were more likely to procure flowers from resident A. cerana, and incoming A. cerana were more likely to defer to resident A. mellifera. A. mellifera were more aggressive toward heterospecifics than conspecifics, with heterospecifics 4.5 times more likely to provoke an aggressive response. However, no significant difference between conspecific and heterospecific aggression was observed for incoming A. cerana. A. mellifera were less abundant, yet overall more likely to acquire flowers and use aggression to do so. Costs of aggression may help explain the population-scale dominance of A. cerana over A. mellifera in this study.
DOI: 10.5061/dryad.2h3qj2r/1
title: ReadMe

description: ReadMe file detailing the locations of data files and describing the data files available in this archive.
DOI: 10.5061/dryad.2h3qj2r/2
title: data baseline model

description: This file contains the output data from the Baseline model (i.e. 'No Management scenario').
DOI: 10.5061/dryad.2h3qj2r/3
title: data ecological management

description: This file is the output data from the model of 'Ecological Management', based on the effects of supplementary feeding.
DOI: 10.5061/dryad.2h3qj2r/4
title: data genetic management 1translocation

description: This file is the output data from the model of 'Genetic Management' consisting of one translocation of 24 individuals.
DOI: 10.5061/dryad.2h3qj2r/5
title: data genetic management 2translocations

description: This file is the output data from the model of 'Genetic Management' consisting of two translocations of 24 individuals each.
DOI: 10.5061/dryad.2h3qj2r/6
title: data genetic management dbltranslocations

description: This file is the output data from the model of 'Genetic Management' consisting of two large translocations of 48 individuals each.
DOI: 10.5061/dryad.2h3qj2r/7
title: data simultaneous management 1translocation

description: This file is the output data from the model of 'Simultaneous Genetic and Ecological Management', consisting of one translocation of 24 individuals.
DOI: 10.5061/dryad.2h3qj2r/8
title: data simultaneous management 2translocations

description: This file is the output data from the model of 'Simultaneous Genetic and Ecological Management', consisting of two translocations of 24 individuals each.
DOI: 10.5061/dryad.33bp0m3/4
title: Nuclear SNPs

description: Nuclear SNPs for all 632 samples.
DOI: 10.5061/dryad.5b2q70j/1
title: Effects of wet fur on grooming

description: Columns are trial, date, video start time, treated bat, treatment, actor bat, receiver bat, behavior (g for social grooming and s for self-grooming), start and end of behavior (hour, minute, and second), and behavior duration
DOI: 10.5061/dryad.5b2q70j/2
title: Self-grooming and allogrooming in small cages

description: Columns are trial, observation, source video, treatment (whether the sample was a test or control period), cage, groomer bat, receiver bat, presence of groomer self-grooming, presence of other self-grooming, onset of allogrooming (hour, minute, and second), duration of allogrooming, onset of self-grooming (hour, minute, and second), duration of receiver self-grooming, presence of receiver self grooming
DOI: 10.5061/dryad.5br2q79/1
title: SMJ_Shukla_etal_gpt_data

description: Gut passage time data for five tree species (Aglaia spectabilis, Beilschmiedia assamica, Polyalthia simiarum, Livistona jenkinsiana, and Syzygium cumini) of Oriental Pied Hornbill, Rufous-necked Hornbill and Wreathed Hornbill
DOI: 10.5061/dryad.5br2q79/2
title: SMJ_Shukla_etal_data_description

description: Data description of the gut passage data
DOI: 10.5061/dryad.8mq3896/1
title: single_xeniid_polyp

description: This zip file contains raw images of a single xeniid coral polyp pulsing for several cycles. The coral polyp and the particles in the fluid are illuminated with a laser sheet.
DOI: 10.5061/dryad.8mq3896/2
title: four_polyp_xeniid

description: This zip file contains raw images of four xeniid coral polyps pulsing. The corals and particles in the fluid are illuminated with a laser sheet.
DOI: 10.5061/dryad.90qg722/42
title: otu_table.g10.group.relative.tran
DOI: 10.5061/dryad.90qg722/43
title: otu_table.p10.group.relative.tran
DOI: 10.5061/dryad.90qg722/44
title: Fig3
DOI: 10.5061/dryad.90qg722/45
title: Fig4
DOI: 10.5061/dryad.90qg722/46
title: Fig5
DOI: 10.5061/dryad.90qg722/47
title: Fig6
DOI: 10.5061/dryad.90qg722/48
title: Fig7
DOI: 10.5061/dryad.90qg722/49
title: S1_fig
DOI: 10.5061/dryad.9tg3t75/1
title: Meta-food web

description: The dataset includes three tables that we described in the Supplementary associated to the publication–same as the readme file, (doi.org/10.1111/ecog.04461): (A) Species list: taxonomic information on the taxa included in our analysis; (B) Pairwise list: a pairwise list that reports all possible interactions between taxa included in our metaweb; (C) Reference list: a table containing the references for trophic interactions (i.e. same as the pairwise list but with duplicated trophic interactions).
DOI: 10.5061/dryad.f1f0q44/1
title: Orthologous single copy genes positive selection

description: One zip file contains 40 species orthologous singe copy genes prior to EST scan and one dn/ds excel file.
DOI: 10.5061/dryad.m4k8gk4/1
title: Supporting Information
DOI: 10.5061/dryad.m4k8gk4/2
title: SM-mp4

description: supplementary movies
DOI: 10.5061/dryad.nj2mg77/2
title: UCE alignments 50% taxon coverage

description: Individual UCE locus alignments included in the 50% taxon coverage dataset
DOI: 10.5061/dryad.vn48c2r/1
title: Individual foraging variation drives social organization in bottlenose dolphins

description: Raw data about group composition and individual foraging variation in bottlenose dolphins
DOI: 10.17632/23j8ktc8yr.1
title: Data for: Prediction of high-resolution reservoir facies and permeability, an integrated approach in the Irwin River Coal Measures Formation, Perth Basin, Western Australia

description: Attached the LAS files for the raw log/core data and the results including the facies logs and the predicted permeability log
DOI: 10.17632/3rm6vpw7bw.1
title: Data for: Vibrational Analysis of Ag, Cu and Ni Nanobeams Using a Hybrid Continuum-Atomistic Model

description: MATLAB and LAMMPS Codes
DOI: 10.17632/tcfn8tztk9.1
title: Data for: Regulation, Innovation, and the Porter Hypothesis: Examining Outcomes in Chinese Pollution Control Policy Areas

description: data for the paper: Regulation and Innovation: Examining Outcomes in Chinese Pollution Control Policy Areas this data is run on R
DOI: 10.17632/vc2wkcmw83.1
title: Data for: Millennial-scale fluctuations in volume transport of the Tsushima Warm Current in the Japan Sea during the Holocene

description: Neogloboquadrina incompta d18O and Mg/Ca ratios in the Japan Sea over the past 6800 years. Core-top d18O and Mg/Ca ratios from 13 sites in the Japan Sea are also included.
DOI: 10.17632/x4cd37zcv6.1
title: Data for: Cross-nanoflower CoS2 in-situ self-assembled on rGO sheet as advanced anode for lithium/sodium ion battery
DOI: 10.5061/dryad.0722ps8/1
title: CSR data of Primula albenensis
DOI: 10.5061/dryad.0722ps8/2
title: Primula albenensis - Ancogno Valley, May 2018
DOI: 10.5061/dryad.1812sr2/1
title: Range-wide genetic baseline alewife

description: Genetic baseline for alewife. Provided in this file is the individual ID composed of the location code (indicated in Reid et al., 2018) and the individual sample number, followed by the single nucleotide polymorphisms (SNPs). These SNPs are characterized in Baetscher et al., (2017). It should be noted that this genetic baseline excludes the populations of Dresden Mills and Sewall pond as described in the materials and methods. For more information please contact John Carlos Garza carlos.garza@noaa.gov or Kerry Reid kerryreid13@gmail.com
DOI: 10.5061/dryad.1812sr2/2
title: Range-wide genetic baseline Blueback herring

description: Genetic baseline for blueback herring. Provided in this file is the individual ID composed of the location code (indicated in Reid et al., 2018) and the individual sample number, followed by the single nucleotide polymorphisms (SNPs). These SNPs are characterized in Baetscher et al., (2017). It should be noted that this genetic baseline excludes the population of Dresden Mills as described in the materials and methods. For more information please contact John Carlos Garza carlos.garza@noaa.gov or Kerry Reid kerryreid13@gmail.com
DOI: 10.5061/dryad.2375033/1
title: Dryad_TERAD_output_8spX4sample

description: Output from TERAD pipeline for 32 samples of Synalpheus snapping shrimps. The data has 8 species and 4 samples for each species. We compared TE composition between data from ddRADseq and LC-WGS in eight snapping shrimp species in the genus Synalpheus (Alpheidae). We used one sample per species for both ddRADseq and LC-WGS, and then added three additional samples (four total) per species for ddRADseq. For explanation of columns, see https://github.com/solomonchak/TERAD.
DOI: 10.5061/dryad.2375033/2
title: Dryad_LCWGS_TEpropXFamily

description: Summary of genome percentages of major TE groups corresponding to the ddRADseq analysis. The data has eight species and one sample per species.
DOI: 10.5061/dryad.2375033/3
title: Dryad_Arthropod_TE_from_Assembly_vs_simulated_ddRAD

description: Genomic proportions of TEs from whole genome assembly and the proportional count of simulated ddRADseq markers that contained TEs from 16 arthropod species from three major lineages of arthropods (Hexapoda, Chelicerata, and Crustacea). We used all of the crustacean whole genome assemblies available at the time of analysis (February 2018), as well as other arthropod genomes in which both whole genomes and genome size data were available. Using a custom script (see Supporting information: simddRAD.sh), we simulated ddRADseq markers from whole genome assemblies using the five combinations of dual restriction enzymes (SbfI-EcoRI, SphI-EcoRI, EcoRI-MspI, SphI-MluCI and NlaIII-MluCI) with increasing genome coverage and a wide size selection criterion (300 ± 36 bp). These enzyme combinations were reported by Peterson et al. (2012) to generate ddRADseq markers across two orders of magnitude of genome coverage in most species. We used RepeatMasker (Smit, Hubley, & Green, 2015) and the arthropod repeat database in Repbase v 20181026 (Bao, Kojima, & Kohany, 2015) to identify TEs in both simulated ddRADseq markers and whole genome assemblies. For genome assemblies, we calculated the proportion of base pairs of the genome that contained TEs. For ddRADseq markers, we calculated the proportional count of ddRADseq markers that contained TEs because ddRADseq only samples a small fraction of the genome and therefore the proportion of TE base pairs is unlikely to be accurate.
DOI: 10.5061/dryad.2h3qj2r/10
title: data for 1st yr survival

description: This file is the data required for estimation of the effect of supplementary feeding on 1st year survival probability.
DOI: 10.5061/dryad.2h3qj2r/11
title: data for 2nd yr survival

description: This file is the data required for estimation of the effect of supplementary feeding on 2nd year survival probability.