cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26401175
title: The island syndrome in plants on New Zealand’s outlying islands: a review

description: The island syndrome is defined as a suite of predictable and consistent differences between island and mainland organisms. In seed plants, much of what we know about the island syndrome comes from work in the Southwest Pacific, which is comprised of the three main islands of New Zealand and ten surrounding archipelagos. These surrounding archipelagos are all remote and relatively small. They were never connected to another landmass and their floras are derived by overwater dispersal, mostly from the main islands of New Zealand, making them an ideal system for the study of island evolution. In this review, we summarise work on the island syndrome conducted on New Zealand’s outlying islands, establish whether these findings are in line with global patterns of island biology or whether they are unique to this region, and propose directions for future research.
DOI: 10.6084/m9.figshare.26401175.v1
title: The island syndrome in plants on New Zealand’s outlying islands: a review

description: The island syndrome is defined as a suite of predictable and consistent differences between island and mainland organisms. In seed plants, much of what we know about the island syndrome comes from work in the Southwest Pacific, which is comprised of the three main islands of New Zealand and ten surrounding archipelagos. These surrounding archipelagos are all remote and relatively small. They were never connected to another landmass and their floras are derived by overwater dispersal, mostly from the main islands of New Zealand, making them an ideal system for the study of island evolution. In this review, we summarise work on the island syndrome conducted on New Zealand’s outlying islands, establish whether these findings are in line with global patterns of island biology or whether they are unique to this region, and propose directions for future research.
DOI: 10.6084/m9.figshare.28746571
title: Bryendophyte fungal association of <i>Hyophila involuta</i> in Northern Thailand

description: Bryophytes exhibit remarkable adaptability to diverse environmental conditions and employ a wide variety of symbiotic relationships with microorganisms. This study focuses on the bryendophyte fungal association of the cosmopolitan moss, <i>Hyophila involuta</i>. We present the first detailed insights into the fungal endophytes of <i>H. involuta</i>, focusing on culturable isolates obtained from a single collection site in Northern Thailand. Morphological characteristics and multi-locus phylogenetic analyses (ITS, LSU, <i>tub, rpb2</i>, <i>tef</i>) were employed to identify the fungal isolates. We report one novel species <i>Purpureocillium hyophilae</i>, and the first report of the asexual morph of <i>Biscogniauxia mangiferae</i>. In addition, new geo-host records of <i>Fusicolla quarantenae</i>, <i>Neocosmospora falciformis</i> and <i>Neopestalotiopsis paeoniae-suffruticosae</i> are reported. This study demonstrates the importance of extensive sampling and the use of multiple gene analyses in accurately identifying fungal isolates, thereby significantly contributing to our understanding of the endophytic fungal symbiosis with bryophytes.
DOI: 10.6084/m9.figshare.28746571.v1
title: Bryendophyte fungal association of <i>Hyophila involuta</i> in Northern Thailand

description: Bryophytes exhibit remarkable adaptability to diverse environmental conditions and employ a wide variety of symbiotic relationships with microorganisms. This study focuses on the bryendophyte fungal association of the cosmopolitan moss, <i>Hyophila involuta</i>. We present the first detailed insights into the fungal endophytes of <i>H. involuta</i>, focusing on culturable isolates obtained from a single collection site in Northern Thailand. Morphological characteristics and multi-locus phylogenetic analyses (ITS, LSU, <i>tub, rpb2</i>, <i>tef</i>) were employed to identify the fungal isolates. We report one novel species <i>Purpureocillium hyophilae</i>, and the first report of the asexual morph of <i>Biscogniauxia mangiferae</i>. In addition, new geo-host records of <i>Fusicolla quarantenae</i>, <i>Neocosmospora falciformis</i> and <i>Neopestalotiopsis paeoniae-suffruticosae</i> are reported. This study demonstrates the importance of extensive sampling and the use of multiple gene analyses in accurately identifying fungal isolates, thereby significantly contributing to our understanding of the endophytic fungal symbiosis with bryophytes.
DOI: 10.6084/m9.figshare.25602207
title: Variation in seed-borne microbial communities of <i>Metrosideros excelsa</i> Sol. ex Gaertn. with consequences for germination success

description: Seed endophytic bacteria and fungi are co-dispersed with seeds and are likely founders of the initial endophytic microbiome in developing seedlings. The effects of the seed microbiome on seedling survival and growth are of particular interest for their roles in protection against pathogens and plant resistance to environmental stress. The fungal pathogen <i>Austropuccinia psidii</i> (G. Winter) Beenken is the causal agent of myrtle rust, which infects more than 480 species of Myrtaceae globally and poses a severe threat to New Zealand endemic species such as <i>Metrosideros excelsa</i> Sol. ex Gaertn. We hypothesised that seedlings of <i>M. excelsa</i> may contain seed-derived microbial communities that may contribute to variation in susceptibility to <i>A. psidii</i>. Culture based methods were used to recover 22 species of fungi (n = 412 isolates) and 16 bacterial taxa (n = 156 isolates) from 1580 <i>M. excelsa</i> seeds collected from 30 trees. Our results indicate broad variation in the isolation frequency and species composition of seed-borne microorganisms among individual trees: while seeds sampled from four trees were free of culturable microorganisms, the other 26 trees accumulated up to eight culturable taxa (both bacteria and fungi) in their seeds, including some species known to be beneficial endophytes or phytopathogens. The most frequently isolated fungal species belong to genera <i>Aureobasidium</i>, <i>Cladosporium</i>, <i>Penicillium</i>, and <i>Pestalotiopsis.</i> These fungi were often isolated from seeds also containing bacteria of the genera <i>Bacillus</i>, <i>Erwinia</i>, and <i>Methylobacterium</i>. At the same time, seeds collected from four trees contained known plant pathogens <i>Colletotrichum</i> aff. <i>fioriniae</i> (Marcelino & Gouli) Pennycook, <i>Neofusicoccum</i> sp., and <i>Robbsia</i> aff. <i>andropogonis</i> (Smith) Lopes-Santos et al., which could affect seed germination. This is the first report of bacterial and fungal communities residing in seeds of endemic New Zealand trees and the potential effects of seed-borne microbiomes on germination.
DOI: 10.6084/m9.figshare.25602207.v1
title: Variation in seed-borne microbial communities of <i>Metrosideros excelsa</i> Sol. ex Gaertn. with consequences for germination success

description: Seed endophytic bacteria and fungi are co-dispersed with seeds and are likely founders of the initial endophytic microbiome in developing seedlings. The effects of the seed microbiome on seedling survival and growth are of particular interest for their roles in protection against pathogens and plant resistance to environmental stress. The fungal pathogen <i>Austropuccinia psidii</i> (G. Winter) Beenken is the causal agent of myrtle rust, which infects more than 480 species of Myrtaceae globally and poses a severe threat to New Zealand endemic species such as <i>Metrosideros excelsa</i> Sol. ex Gaertn. We hypothesised that seedlings of <i>M. excelsa</i> may contain seed-derived microbial communities that may contribute to variation in susceptibility to <i>A. psidii</i>. Culture based methods were used to recover 22 species of fungi (n = 412 isolates) and 16 bacterial taxa (n = 156 isolates) from 1580 <i>M. excelsa</i> seeds collected from 30 trees. Our results indicate broad variation in the isolation frequency and species composition of seed-borne microorganisms among individual trees: while seeds sampled from four trees were free of culturable microorganisms, the other 26 trees accumulated up to eight culturable taxa (both bacteria and fungi) in their seeds, including some species known to be beneficial endophytes or phytopathogens. The most frequently isolated fungal species belong to genera <i>Aureobasidium</i>, <i>Cladosporium</i>, <i>Penicillium</i>, and <i>Pestalotiopsis.</i> These fungi were often isolated from seeds also containing bacteria of the genera <i>Bacillus</i>, <i>Erwinia</i>, and <i>Methylobacterium</i>. At the same time, seeds collected from four trees contained known plant pathogens <i>Colletotrichum</i> aff. <i>fioriniae</i> (Marcelino & Gouli) Pennycook, <i>Neofusicoccum</i> sp., and <i>Robbsia</i> aff. <i>andropogonis</i> (Smith) Lopes-Santos et al., which could affect seed germination. This is the first report of bacterial and fungal communities residing in seeds of endemic New Zealand trees and the potential effects of seed-borne microbiomes on germination.
DOI: 10.6084/m9.figshare.29039020
title: Cultivation of <i>Ganoderma</i>: methodologies and hurdles

description: <i>Ganoderma</i>, a prized medicinal mushroom renowned for its therapeutic properties, has a rich history of traditional use. As demand for this valuable fungus continues to rise, cultivation emerges as a sustainable solution to meet market needs. This review explores the intricate methodologies and challenges associated with cultivating <i>Ganoderma</i>. Successful cultivation hinges upon meticulous substrate selection, efficient spawn production, and precise management of cultivation parameters. By optimising these factors, cultivators can achieve high yields with consistent quality. However, the cultivation of <i>Ganoderma</i> is challenging. Contamination control poses a significant challenge, necessitating rigorous protocols to maintain purity and prevent unwanted microbial growth. Genetic variability within strains of <i>Ganoderma</i> presents complexities that require careful management to ensure uniformity and desired traits in cultivated populations. To overcome these challenges and further enhance cultivation efficiency, the adoption of biotechnological approaches holds considerable promise. Harnessing advancements in biotechnology can facilitate targeted improvements in <i>Ganoderma</i> cultivation, from optimising growth conditions to enhancing strain resilience and productivity. This review provides an in-depth exploration of <i>Ganoderma</i> cultivation techniques, highlighting key considerations and recent advancements. By addressing challenges and leveraging innovative strategies, <i>Ganoderma</i> cultivation is poised to meet the growing demand for this esteemed medicinal mushroom.
DOI: 10.6084/m9.figshare.29039020.v1
title: Cultivation of <i>Ganoderma</i>: methodologies and hurdles

description: <i>Ganoderma</i>, a prized medicinal mushroom renowned for its therapeutic properties, has a rich history of traditional use. As demand for this valuable fungus continues to rise, cultivation emerges as a sustainable solution to meet market needs. This review explores the intricate methodologies and challenges associated with cultivating <i>Ganoderma</i>. Successful cultivation hinges upon meticulous substrate selection, efficient spawn production, and precise management of cultivation parameters. By optimising these factors, cultivators can achieve high yields with consistent quality. However, the cultivation of <i>Ganoderma</i> is challenging. Contamination control poses a significant challenge, necessitating rigorous protocols to maintain purity and prevent unwanted microbial growth. Genetic variability within strains of <i>Ganoderma</i> presents complexities that require careful management to ensure uniformity and desired traits in cultivated populations. To overcome these challenges and further enhance cultivation efficiency, the adoption of biotechnological approaches holds considerable promise. Harnessing advancements in biotechnology can facilitate targeted improvements in <i>Ganoderma</i> cultivation, from optimising growth conditions to enhancing strain resilience and productivity. This review provides an in-depth exploration of <i>Ganoderma</i> cultivation techniques, highlighting key considerations and recent advancements. By addressing challenges and leveraging innovative strategies, <i>Ganoderma</i> cultivation is poised to meet the growing demand for this esteemed medicinal mushroom.
DOI: 10.6084/m9.figshare.28701527
title: Systematics and physiology of <i>Cladophialophora matsushimae</i> (<i>Chaetothyriales</i>) associated with ant carton and five new combinations in <i>Cladophialophora</i> and <i>Epibryon</i>

description: A black mould was isolated from an ant carton on dead petioles of <i>Phoenix roebelenii</i> during a survey of tropical ant-associated fungi. Morphology coupled with phylogeny based on the combined ITS, LSU, SSU, <i>tef1-α</i> and <i>β-tub</i> loci identified this taxon as <i>Cladophialophora matsushimae.</i> Maximum Likelihood and Bayesian Inference analyses were used to clarify the phylogenetic affinities of the species. Several global reports of <i>Cladophialophora matsushimae</i> linked the fungus to ant cartons, indicating a specific ecological preference observed repeatedly in <i>Chaetothyriales</i>. We provide microscopic and physiological characteristics of poorly known fungus, <i>C. matsushimae</i>. Furthermore, we transferred <i>Cladophialophora humicola</i> Crous & U. Braun, <i>C. minutissima</i> M.L. Davey & Currah, and <i>C. sylvestris</i> Crous & de Hoog to <i>Epibryon</i> (<i>Epibryaceae</i>) and <i>Fonsecaea brasiliensis</i> V.A. Vicente, Najafz., C.H.W. Klaassen & de Hoog and <i>F. minima</i> V.A. Vicente, Najafz., J.F. Sun & de Hoog to <i>Cladophialophora</i>, introduce five new combinations based on phylogenetic evidences.
DOI: 10.6084/m9.figshare.28701527.v1
title: Systematics and physiology of <i>Cladophialophora matsushimae</i> (<i>Chaetothyriales</i>) associated with ant carton and five new combinations in <i>Cladophialophora</i> and <i>Epibryon</i>

description: A black mould was isolated from an ant carton on dead petioles of <i>Phoenix roebelenii</i> during a survey of tropical ant-associated fungi. Morphology coupled with phylogeny based on the combined ITS, LSU, SSU, <i>tef1-α</i> and <i>β-tub</i> loci identified this taxon as <i>Cladophialophora matsushimae.</i> Maximum Likelihood and Bayesian Inference analyses were used to clarify the phylogenetic affinities of the species. Several global reports of <i>Cladophialophora matsushimae</i> linked the fungus to ant cartons, indicating a specific ecological preference observed repeatedly in <i>Chaetothyriales</i>. We provide microscopic and physiological characteristics of poorly known fungus, <i>C. matsushimae</i>. Furthermore, we transferred <i>Cladophialophora humicola</i> Crous & U. Braun, <i>C. minutissima</i> M.L. Davey & Currah, and <i>C. sylvestris</i> Crous & de Hoog to <i>Epibryon</i> (<i>Epibryaceae</i>) and <i>Fonsecaea brasiliensis</i> V.A. Vicente, Najafz., C.H.W. Klaassen & de Hoog and <i>F. minima</i> V.A. Vicente, Najafz., J.F. Sun & de Hoog to <i>Cladophialophora</i>, introduce five new combinations based on phylogenetic evidences.
DOI: 10.15468/dl.8kg8ez
title: Occurrence Download

description: A dataset containing 732 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((-73.581 4.44716, -73.651473 4.44159, -73.720208 4.425018, -73.78551 4.397851, -73.84576800000001 4.360762, -73.899497 4.314662, -73.945375 4.260691, -73.98227199999999 4.200177, -74.009281 4.134612, -74.025739 4.065612, -74.031244 3.994876, -74.02566299999999 3.924146, -74.009136 3.855163, -73.982073 3.789625, -73.94514100000001 3.729145, -73.89925100000001 3.675211, -73.845533 3.62915, -73.78531 3.592094, -73.720063 3.564954, -73.651397 3.548399, -73.581 3.542835, -73.510603 3.548399, -73.441937 3.564954, -73.37669 3.592094, -73.316467 3.62915, -73.262749 3.675211, -73.216859 3.729145, -73.17992700000001 3.789625, -73.15286399999999 3.855163, -73.136337 3.924146, -73.13075600000001 3.994876, -73.136261 4.065612, -73.152719 4.134612, -73.179728 4.200177, -73.21662499999999 4.260691, -73.262503 4.314662, -73.316232 4.360762, -73.37649 4.397851, -73.44179200000001 4.425018, -73.510527 4.44159, -73.581 4.44716))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 732 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002487-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aeas62
title: Occurrence Download

description: A dataset containing 106052 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gypaetus barbatus"
 ]
}

 The dataset includes 106052 records from 369 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002452-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18326560
title: Moshood Bámigbóyè: Designing Modernity from Tradition

description: A scenography adapted from the Essay: "As Far Up AsTo Support the Skies" by its original author Pascal ALCAN LEGRAND, on how the Ifà Priest Moshood Bámigbóyè designed Modernity from Tradition in Nigeria.
DOI: 10.5281/zenodo.18326559
title: Moshood Bámigbóyè: Designing Modernity from Tradition

description: A scenography adapted from the Essay: "As Far Up AsTo Support the Skies" by its original author Pascal ALCAN LEGRAND, on how the Ifà Priest Moshood Bámigbóyè designed Modernity from Tradition in Nigeria.
DOI: 10.5281/zenodo.18326820
title: Data and code for: Strongly reducing sediments hinder restoration of a eutrophic coastal marine ecosystem

description: Anthropogenic activities are causing deoxygenation of coastal waters leading to degradation of such ecosystems globally. In the Dutch Southwest Delta, coastal management has turned tidal waters into marine lakes. The ensuing stagnation and stratification in combination with eutrophication has caused a decline in water quality, including decreased oxygen (O2) saturation. Restoring such systems is challenging as exemplified by Lake Veere, which was reconnected to the tidal marine Eastern Scheldt, via a culvert, two decades ago. After an initial improvement, water quality strongly declined again in recent years. Here, we investigate the consequences of the restoration effort on coastal deoxygenation by leveraging existing monitoring data of oxygen, temperature, salinity, and benthic macroinvertebrates. In addition, we quantified the O2 demand of the sediment at selected sites via field measurements. Water quality monitoring data indicate that the restored tidal influence resulted in strong improvements in O2 saturation of bottom waters. However, improvements were confined to the eastern part nearby the inflow of marine water. Modelled bottom water O2 concentrations and observed benthic macroinvertebrate densities are related, and show reduced densities under low-O2, especially for less mobile infauna. This highlights the detrimental effect of deoxygenation on benthic faunal communities. Geochemical analyses reveal a very high sedimentary O2 demand, mainly caused by high concentrations of the reduced solutes ammonium and hydrogen sulfide (H2S). These solutes are toxic and are formed by anaerobic (re)mineralization of organic matter. Furthermore, low availability of easily reducible iron-oxides in the lake sediments mutes the formation of iron-sulfides, explaining high porewater H2S concentrations, and release of H2S into bottom waters. Combined, our results illustrate the challenge of restoring a coastal ecosystem by increasing lateral oxygen supply without addressing the legacy effects of eutrophication in the sediments, reemphasizing the importance of nutrient reductions in restoration strategies.
DOI: 10.5281/zenodo.17252295
title: Data and code for: Strongly reducing sediments hinder restoration of a eutrophic coastal marine ecosystem

description: Anthropogenic activities are causing deoxygenation of coastal waters leading to degradation of such ecosystems globally. In the Dutch Southwest Delta, coastal management has turned tidal waters into marine lakes. The ensuing stagnation and stratification in combination with eutrophication has caused a decline in water quality, including decreased oxygen (O2) saturation. Restoring such systems is challenging as exemplified by Lake Veere, which was reconnected to the tidal marine Eastern Scheldt, via a culvert, two decades ago. After an initial improvement, water quality strongly declined again in recent years. Here, we investigate the consequences of the restoration effort on coastal deoxygenation by leveraging existing monitoring data of oxygen, temperature, salinity, and benthic macroinvertebrates. In addition, we quantified the O2 demand of the sediment at selected sites via field measurements. Water quality monitoring data indicate that the restored tidal influence resulted in strong improvements in O2 saturation of bottom waters. However, improvements were confined to the eastern part nearby the inflow of marine water. Modelled bottom water O2 concentrations and observed benthic macroinvertebrate densities are related, and show reduced densities under low-O2, especially for less mobile infauna. This highlights the detrimental effect of deoxygenation on benthic faunal communities. Geochemical analyses reveal a very high sedimentary O2 demand, mainly caused by high concentrations of the reduced solutes ammonium and hydrogen sulfide (H2S). These solutes are toxic and are formed by anaerobic (re)mineralization of organic matter. Furthermore, low availability of easily reducible iron-oxides in the lake sediments mutes the formation of iron-sulfides, explaining high porewater H2S concentrations, and release of H2S into bottom waters. Combined, our results illustrate the challenge of restoring a coastal ecosystem by increasing lateral oxygen supply without addressing the legacy effects of eutrophication in the sediments, reemphasizing the importance of nutrient reductions in restoration strategies.
DOI: 10.15468/dl.d7aze4
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cyperus brevifolius",
 "Year 1970-2000"
 ]
}

 The dataset includes 55 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002489-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18326775
title: Test data for BH SPC

description: Contains images of FocalCheck beads recorded by BH SPCM software as time-tagged photon data.
DOI: 10.5281/zenodo.18326776
title: Test data for BH SPC

description: Contains images of FocalCheck beads recorded by BH SPCM software as time-tagged photon data.