cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10497674
title: Normal Chip H3K23ac Control

description: After isolation, 1x106 cells were fixed in 1% formaldehyde for 14 minutes and fixation was quenched with the addition of glycine to 125 mM for an additional 1 minute. Cells were washed three times with PBS supplemented with copmlete protease inhibitor cocktail (Roche, 11836145001) and 10 mM sodium butyrate (Sigma Aldrich, 303410), followed by harvesting via scraping from plates. ChIP was performed as previously described{Arrigoni, 2018 #528}, except that no barcode ligation and pooling was performed. Nuclei isolation was performed for 4.5 minutes at peak power 75 Watt, duty factor 2% and 200 cycles/burst using the Covaris E220 instrument (Covaris). Immunoprecipitation (IP) was performed using 2 µg of antibody and protein A/G Dynabeads (Thermo Scientific, 88802). For each IP, an equal amount of chromatin was used per sample. Chromatin quantification was performed by Nanodrop (Thermo Fisher Scientific). The immunoprecipitated DNA was quantified by Qubit 4 Fluorometer (Thermo Scientific) prior to library preparation. Sequencing libraries were prepared using the NEBNext Ultra library preparation kit (New England BioLab, E7645S), and then assessed for quality and quantity via the BioAnalyzer (Agilent). Generated libraries were sequenced on an Illumina NovaSeq instrument (150 bp, paired-end).
DOI: 10.5281/zenodo.10497675
title: Normal Chip H3K23ac Control

description: After isolation, 1x106 cells were fixed in 1% formaldehyde for 14 minutes and fixation was quenched with the addition of glycine to 125 mM for an additional 1 minute. Cells were washed three times with PBS supplemented with copmlete protease inhibitor cocktail (Roche, 11836145001) and 10 mM sodium butyrate (Sigma Aldrich, 303410), followed by harvesting via scraping from plates. ChIP was performed as previously described{Arrigoni, 2018 #528}, except that no barcode ligation and pooling was performed. Nuclei isolation was performed for 4.5 minutes at peak power 75 Watt, duty factor 2% and 200 cycles/burst using the Covaris E220 instrument (Covaris). Immunoprecipitation (IP) was performed using 2 µg of antibody and protein A/G Dynabeads (Thermo Scientific, 88802). For each IP, an equal amount of chromatin was used per sample. Chromatin quantification was performed by Nanodrop (Thermo Fisher Scientific). The immunoprecipitated DNA was quantified by Qubit 4 Fluorometer (Thermo Scientific) prior to library preparation. Sequencing libraries were prepared using the NEBNext Ultra library preparation kit (New England BioLab, E7645S), and then assessed for quality and quantity via the BioAnalyzer (Agilent). Generated libraries were sequenced on an Illumina NovaSeq instrument (150 bp, paired-end).
DOI: 10.5281/zenodo.10497706
title: Normal Chip H3K27ac Control

description: After isolation, 1x106 cells were fixed in 1% formaldehyde for 14 minutes and fixation was quenched with the addition of glycine to 125 mM for an additional 1 minute. Cells were washed three times with PBS supplemented with copmlete protease inhibitor cocktail (Roche, 11836145001) and 10 mM sodium butyrate (Sigma Aldrich, 303410), followed by harvesting via scraping from plates. ChIP was performed as previously described{Arrigoni, 2018 #528}, except that no barcode ligation and pooling was performed. Nuclei isolation was performed for 4.5 minutes at peak power 75 Watt, duty factor 2% and 200 cycles/burst using the Covaris E220 instrument (Covaris). Immunoprecipitation (IP) was performed using 2 µg of antibody and protein A/G Dynabeads (Thermo Scientific, 88802). For each IP, an equal amount of chromatin was used per sample. Chromatin quantification was performed by Nanodrop (Thermo Fisher Scientific). The immunoprecipitated DNA was quantified by Qubit 4 Fluorometer (Thermo Scientific) prior to library preparation. Sequencing libraries were prepared using the NEBNext Ultra library preparation kit (New England BioLab, E7645S), and then assessed for quality and quantity via the BioAnalyzer (Agilent). Generated libraries were sequenced on an Illumina NovaSeq instrument (150 bp, paired-end).
DOI: 10.5281/zenodo.10497707
title: Normal Chip H3K27ac Control

description: After isolation, 1x106 cells were fixed in 1% formaldehyde for 14 minutes and fixation was quenched with the addition of glycine to 125 mM for an additional 1 minute. Cells were washed three times with PBS supplemented with copmlete protease inhibitor cocktail (Roche, 11836145001) and 10 mM sodium butyrate (Sigma Aldrich, 303410), followed by harvesting via scraping from plates. ChIP was performed as previously described{Arrigoni, 2018 #528}, except that no barcode ligation and pooling was performed. Nuclei isolation was performed for 4.5 minutes at peak power 75 Watt, duty factor 2% and 200 cycles/burst using the Covaris E220 instrument (Covaris). Immunoprecipitation (IP) was performed using 2 µg of antibody and protein A/G Dynabeads (Thermo Scientific, 88802). For each IP, an equal amount of chromatin was used per sample. Chromatin quantification was performed by Nanodrop (Thermo Fisher Scientific). The immunoprecipitated DNA was quantified by Qubit 4 Fluorometer (Thermo Scientific) prior to library preparation. Sequencing libraries were prepared using the NEBNext Ultra library preparation kit (New England BioLab, E7645S), and then assessed for quality and quantity via the BioAnalyzer (Agilent). Generated libraries were sequenced on an Illumina NovaSeq instrument (150 bp, paired-end).
DOI: 10.5281/zenodo.10497686
title: Normal Chip H3K23ac BA

description: After isolation, 1x106 cells were fixed in 1% formaldehyde for 14 minutes and fixation was quenched with the addition of glycine to 125 mM for an additional 1 minute. Cells were washed three times with PBS supplemented with copmlete protease inhibitor cocktail (Roche, 11836145001) and 10 mM sodium butyrate (Sigma Aldrich, 303410), followed by harvesting via scraping from plates. ChIP was performed as previously described{Arrigoni, 2018 #528}, except that no barcode ligation and pooling was performed. Nuclei isolation was performed for 4.5 minutes at peak power 75 Watt, duty factor 2% and 200 cycles/burst using the Covaris E220 instrument (Covaris). Immunoprecipitation (IP) was performed using 2 µg of antibody and protein A/G Dynabeads (Thermo Scientific, 88802). For each IP, an equal amount of chromatin was used per sample. Chromatin quantification was performed by Nanodrop (Thermo Fisher Scientific). The immunoprecipitated DNA was quantified by Qubit 4 Fluorometer (Thermo Scientific) prior to library preparation. Sequencing libraries were prepared using the NEBNext Ultra library preparation kit (New England BioLab, E7645S), and then assessed for quality and quantity via the BioAnalyzer (Agilent). Generated libraries were sequenced on an Illumina NovaSeq instrument (150 bp, paired-end).
DOI: 10.5281/zenodo.10497687
title: Normal Chip H3K23ac BA

description: After isolation, 1x106 cells were fixed in 1% formaldehyde for 14 minutes and fixation was quenched with the addition of glycine to 125 mM for an additional 1 minute. Cells were washed three times with PBS supplemented with copmlete protease inhibitor cocktail (Roche, 11836145001) and 10 mM sodium butyrate (Sigma Aldrich, 303410), followed by harvesting via scraping from plates. ChIP was performed as previously described{Arrigoni, 2018 #528}, except that no barcode ligation and pooling was performed. Nuclei isolation was performed for 4.5 minutes at peak power 75 Watt, duty factor 2% and 200 cycles/burst using the Covaris E220 instrument (Covaris). Immunoprecipitation (IP) was performed using 2 µg of antibody and protein A/G Dynabeads (Thermo Scientific, 88802). For each IP, an equal amount of chromatin was used per sample. Chromatin quantification was performed by Nanodrop (Thermo Fisher Scientific). The immunoprecipitated DNA was quantified by Qubit 4 Fluorometer (Thermo Scientific) prior to library preparation. Sequencing libraries were prepared using the NEBNext Ultra library preparation kit (New England BioLab, E7645S), and then assessed for quality and quantity via the BioAnalyzer (Agilent). Generated libraries were sequenced on an Illumina NovaSeq instrument (150 bp, paired-end).
DOI: 10.5281/zenodo.10497752
title: Normal Chip H4K16ac Control

description: After isolation, 1x106 cells were fixed in 1% formaldehyde for 14 minutes and fixation was quenched with the addition of glycine to 125 mM for an additional 1 minute. Cells were washed three times with PBS supplemented with copmlete protease inhibitor cocktail (Roche, 11836145001) and 10 mM sodium butyrate (Sigma Aldrich, 303410), followed by harvesting via scraping from plates. ChIP was performed as previously described{Arrigoni, 2018 #528}, except that no barcode ligation and pooling was performed. Nuclei isolation was performed for 4.5 minutes at peak power 75 Watt, duty factor 2% and 200 cycles/burst using the Covaris E220 instrument (Covaris). Immunoprecipitation (IP) was performed using 2 µg of antibody and protein A/G Dynabeads (Thermo Scientific, 88802). For each IP, an equal amount of chromatin was used per sample. Chromatin quantification was performed by Nanodrop (Thermo Fisher Scientific). The immunoprecipitated DNA was quantified by Qubit 4 Fluorometer (Thermo Scientific) prior to library preparation. Sequencing libraries were prepared using the NEBNext Ultra library preparation kit (New England BioLab, E7645S), and then assessed for quality and quantity via the BioAnalyzer (Agilent). Generated libraries were sequenced on an Illumina NovaSeq instrument (150 bp, paired-end).
DOI: 10.5281/zenodo.10497753
title: Normal Chip H4K16ac Control

description: After isolation, 1x106 cells were fixed in 1% formaldehyde for 14 minutes and fixation was quenched with the addition of glycine to 125 mM for an additional 1 minute. Cells were washed three times with PBS supplemented with copmlete protease inhibitor cocktail (Roche, 11836145001) and 10 mM sodium butyrate (Sigma Aldrich, 303410), followed by harvesting via scraping from plates. ChIP was performed as previously described{Arrigoni, 2018 #528}, except that no barcode ligation and pooling was performed. Nuclei isolation was performed for 4.5 minutes at peak power 75 Watt, duty factor 2% and 200 cycles/burst using the Covaris E220 instrument (Covaris). Immunoprecipitation (IP) was performed using 2 µg of antibody and protein A/G Dynabeads (Thermo Scientific, 88802). For each IP, an equal amount of chromatin was used per sample. Chromatin quantification was performed by Nanodrop (Thermo Fisher Scientific). The immunoprecipitated DNA was quantified by Qubit 4 Fluorometer (Thermo Scientific) prior to library preparation. Sequencing libraries were prepared using the NEBNext Ultra library preparation kit (New England BioLab, E7645S), and then assessed for quality and quantity via the BioAnalyzer (Agilent). Generated libraries were sequenced on an Illumina NovaSeq instrument (150 bp, paired-end).
DOI: 10.5281/zenodo.10497756
title: Normal Chip H4K16ac BA

description: After isolation, 1x106 cells were fixed in 1% formaldehyde for 14 minutes and fixation was quenched with the addition of glycine to 125 mM for an additional 1 minute. Cells were washed three times with PBS supplemented with copmlete protease inhibitor cocktail (Roche, 11836145001) and 10 mM sodium butyrate (Sigma Aldrich, 303410), followed by harvesting via scraping from plates. ChIP was performed as previously described{Arrigoni, 2018 #528}, except that no barcode ligation and pooling was performed. Nuclei isolation was performed for 4.5 minutes at peak power 75 Watt, duty factor 2% and 200 cycles/burst using the Covaris E220 instrument (Covaris). Immunoprecipitation (IP) was performed using 2 µg of antibody and protein A/G Dynabeads (Thermo Scientific, 88802). For each IP, an equal amount of chromatin was used per sample. Chromatin quantification was performed by Nanodrop (Thermo Fisher Scientific). The immunoprecipitated DNA was quantified by Qubit 4 Fluorometer (Thermo Scientific) prior to library preparation. Sequencing libraries were prepared using the NEBNext Ultra library preparation kit (New England BioLab, E7645S), and then assessed for quality and quantity via the BioAnalyzer (Agilent). Generated libraries were sequenced on an Illumina NovaSeq instrument (150 bp, paired-end).
DOI: 10.5281/zenodo.10497757
title: Normal Chip H4K16ac BA

description: After isolation, 1x106 cells were fixed in 1% formaldehyde for 14 minutes and fixation was quenched with the addition of glycine to 125 mM for an additional 1 minute. Cells were washed three times with PBS supplemented with copmlete protease inhibitor cocktail (Roche, 11836145001) and 10 mM sodium butyrate (Sigma Aldrich, 303410), followed by harvesting via scraping from plates. ChIP was performed as previously described{Arrigoni, 2018 #528}, except that no barcode ligation and pooling was performed. Nuclei isolation was performed for 4.5 minutes at peak power 75 Watt, duty factor 2% and 200 cycles/burst using the Covaris E220 instrument (Covaris). Immunoprecipitation (IP) was performed using 2 µg of antibody and protein A/G Dynabeads (Thermo Scientific, 88802). For each IP, an equal amount of chromatin was used per sample. Chromatin quantification was performed by Nanodrop (Thermo Fisher Scientific). The immunoprecipitated DNA was quantified by Qubit 4 Fluorometer (Thermo Scientific) prior to library preparation. Sequencing libraries were prepared using the NEBNext Ultra library preparation kit (New England BioLab, E7645S), and then assessed for quality and quantity via the BioAnalyzer (Agilent). Generated libraries were sequenced on an Illumina NovaSeq instrument (150 bp, paired-end).
DOI: 10.5281/zenodo.10576908
title: YUTO MMS Dataset, Sequence B, Images, Part1
DOI: 10.5281/zenodo.10576909
title: YUTO MMS Dataset, Sequence B, Images, Part1
DOI: 10.5281/zenodo.6779078
title: Citizen-based Monitoring of Urban Green Spaces in the Greater Paramaribo region, Suriname

description: This dataset provides information for the urban green spaces monitored every month by a citizen (2021-2022). In a survey app, the citizens systematically report on the vegetation changes, visitors and their activities, and the green space maintenance issues and nuisances. Detailed metadata information is provided. The www.groenparamaribo.org dashboard provided data until Oct 2023.

The data were collected for the Tropenbos Suriname and the University of Twente-Faculty Geo-information Science and Earth Observation (ITC) project ‘ (UTSN 31-123-M-G ) and Keeping track of changes towards healthy-living in a green urban Suriname" (project number NWA.1418.20.010). And must be accredited as follows: 

Lisa Best, Davita Obergh, Rudi van Kanten, Nina Schwarz, Louise Willemen. Urban green space citizen-based monitoring, product of “Naar een groen en leefbaarder Paramaribo” and '’by Tropenbos Suriname and University of Twente-ITC. DOI 10.5281/zenodo.6779079, licensed under the Creative Commons License CC BY-NC-SA 4.0.”
DOI: 10.5517/ccdc.csd.cc2fmgg0
title: CCDC 2253032: Experimental Crystal Structure Determination

description: Related Article: Siyu Liang, Yuxin Zhou, Wei Yu|2024|Org.Lett.|26|613|doi:10.1021/acs.orglett.3c03883
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fmgj2
title: CCDC 2253034: Experimental Crystal Structure Determination

description: Related Article: Siyu Liang, Yuxin Zhou, Wei Yu|2024|Org.Lett.|26|613|doi:10.1021/acs.orglett.3c03883
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fs2gs
title: CCDC 2257465: Experimental Crystal Structure Determination

description: Related Article: Haijian Wu, Yanan Li, Manman Sun, Jing Zhang, Jinshan Li, Jianguo Yang|2024|Org.Lett.|26|751|doi:10.1021/acs.orglett.3c04251
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g5zqc
title: CCDC 2269873: Experimental Crystal Structure Determination

description: Related Article: Weiguan Qi, Shiyu Gu, Lan-Gui Xie|2024|Org.Lett.|26|728|doi:10.1021/acs.orglett.3c04183
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gkbt6
title: CCDC 2280788: Experimental Crystal Structure Determination

description: Related Article: Baoqi Wu, Zhi-Wei Li, Feng Lin, Rongzhi Tang, Wanqing Zhang, Hongwei Liu, Gangfeng Ouyang, Yu Tan|2024|J.Hazard.Mater.|465|133449|doi:10.1016/j.jhazmat.2024.133449
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gkbv7
title: CCDC 2280789: Experimental Crystal Structure Determination

description: Related Article: Baoqi Wu, Zhi-Wei Li, Feng Lin, Rongzhi Tang, Wanqing Zhang, Hongwei Liu, Gangfeng Ouyang, Yu Tan|2024|J.Hazard.Mater.|465|133449|doi:10.1016/j.jhazmat.2024.133449
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gkbw8
title: CCDC 2280790: Experimental Crystal Structure Determination

description: Related Article: Baoqi Wu, Zhi-Wei Li, Feng Lin, Rongzhi Tang, Wanqing Zhang, Hongwei Liu, Gangfeng Ouyang, Yu Tan|2024|J.Hazard.Mater.|465|133449|doi:10.1016/j.jhazmat.2024.133449
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gkbx9
title: CCDC 2280791: Experimental Crystal Structure Determination

description: Related Article: Baoqi Wu, Zhi-Wei Li, Feng Lin, Rongzhi Tang, Wanqing Zhang, Hongwei Liu, Gangfeng Ouyang, Yu Tan|2024|J.Hazard.Mater.|465|133449|doi:10.1016/j.jhazmat.2024.133449
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gkbyb
title: CCDC 2280792: Experimental Crystal Structure Determination

description: Related Article: Baoqi Wu, Zhi-Wei Li, Feng Lin, Rongzhi Tang, Wanqing Zhang, Hongwei Liu, Gangfeng Ouyang, Yu Tan|2024|J.Hazard.Mater.|465|133449|doi:10.1016/j.jhazmat.2024.133449
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7910/dvn/z7ou6r
title: Human time travel

description: Throughout history there have been documented and researched cases of human time travel. These cases are not very well known in the world and they are not very common either. Nevertheless, their frequency is much higher than cases of spontaneous combustion of the human body. According to statistics, there are actually far more cases than we actually know about. One reason is considered to be that people who have traveled through time do not dare to talk about it publicly for fear of getting a reputation of being crazy. However, the most extraordinary thing is that these cases can be explained by the theories mentioned before, in which a person would travel in time if the electric field of his charge changed throughout the space around him. These cases of time travel can be explained very precisely with the conclusions derived from this theory of time travel, which has been written down and presented in the entire preceding 1000+ pages of material. Therefore, it is extremely important to study and analyze these cases very thoroughly. These cases provide fairly objective evidence of the validity of the theory of time travel, or at least theoretical proof/plausibility. These cases have been studied for centuries and are well documented throughout history. One of the best-known investigative experts was Jenny Randles, who documented hundreds of cases of human time travel.
DOI: 10.5281/zenodo.10522968
title: The rural exodus of young people from empty Spain. Socio-educational aspects (Datasets)

description: Estos datos abordan la opinión de los miembros de los Grupos de Desarrollo Rural de una de las zonas más despobladas del sur de Europa. El objetivo de este estudio fue conocer su opinión sobre los principales factores que impulsan a los jóvenes a abandonar las tierras altas celtíberas, así como as medidas socioeducativas que estiman necesarias para evitar este éxodo. Un total de 165 participantes contestaron a un cuestionario de elaboración propia. Estas respuestas fueron complementadas con entrevistas y observaciones in situ. 

Estos datos están asociados a la siguiente publicación:

LLORENT-BEDMAR, V., COBANO-DELGADO PALMA, V. Y NAVARRO-GRANADOS, M. 2021. The rural exodus of young people from empty Spain. Socio-educational aspects. Journal of Rural Studies, 82, 303-314. https://doi.org/10.1016/j.jrurstud.2021.01.014. Editorial: PERGAMON-ELSEVIER SCIENCE LTD. País de publicación: England. ISSN: 0743-0167.