cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.qp9qr1
title: Synthesis of Iron(IV) Alkynylide Complexes and Their Reactivity to Form 1,3-diynes

description: Raw data and treated data generated by the MPI CEC published in "Synthesis of Iron(IV) Alkynylide Complexes and Their Reactivity to Form 1,3-diynes", Angew. Chem. Int. Ed. 2024, e202421222 (https://doi.org/10.1002/anie.202421222)
DOI: 10.17617/3.taxlee
title: Investigating the molybdenum nitrogenase mechanistic cycle using spectroelectrochemistry

description: Data for the manuscript "Investigating the molybdenum nitrogenase mechanistic cycle using spectroelectrochemistry"
DOI: 10.17617/3.hspksy
title: Understanding the Role of Hydrogen and Oxygen in Electronic Phase Changes of Nickelates

description: The data shown in the respective figures of the publication "Understanding the Role of Hydrogen and Oxygen in Electronic Phase Changes of Nickelates" can be found in the data files named Fig*.csv. The file format is CSV with delimiter ','. Please see the README.docx file for further explanation of the data file names.
DOI: 10.17617/3.c9wi7c
title: Analysis scripts for Cookies Having Independent Partitioned State (CHIPS) measurement

description: This collection contains analysis scripts to reproduce our analysis for the CHIPS measurements. The results are published in the paper "A First Look at Cookies Having Independent Partitioned State" published at the "Passive and Active Measurement Conference 2025" (PAM 2025).
DOI: 10.17617/3.eao4vx
title: Source data for "Controlling glycan folding with ionic functional groups"

description: Raw data for NMR and SAXS analysis
DOI: 10.17617/3.yc8rsi
title: Analysis of warm pool precipitation in ICON

description: These files are used to analyze ICON data for the scientific article :" A single tropical rainbelt in global storm-resolving models: the role of surface heat fluxes over the warm pool"
DOI: 10.15468/dl.ctzkcz
title: Occurrence Download

description: A dataset containing 5023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Boletus edulis Bull.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry POLYGON ((-20 20, -20 75, 45 75, 45 20, -20 20))"
 ]
}

 The dataset includes 5023 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021497-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.bgrpmi
title: PaECTER embeddings for Patstat 2023 Fall (USPTO and EPO)

description: &lt;p&gt;&lt;strong&gt;PaECTER embeddings for all patent families as of Patstat 2023 Fall release.&lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;File &lt;code&gt;"PaECTER_EPO_patstat-2023-fall.parquet"&lt;/code&gt; contains embeddings for all patent families with an EPO member (&lt;strong&gt;3.9M&lt;/strong&gt;).&lt;/p&gt;
&lt;p&gt;File &lt;code&gt;"PaECTER_USPTO_patstat-2023-fall.parquet"&lt;/code&gt; contains embeddings for all patent families with a USPTO member (&lt;strong&gt;9.2M&lt;/strong&gt;).&lt;/p&gt;

&lt;p&gt;We encoded one representative member of the patent family according to the following rule:&lt;/p&gt;
&lt;ul&gt;
 &lt;li&gt;has English abstract&lt;/li&gt;
 &lt;li&gt;&lt;strong&gt;Authority Priority rule:&lt;/strong&gt; EP &gt; WO &gt; US &gt; CN &gt; JP &gt; KR &gt; GB &gt; CA &gt; TW &gt; DE &gt; ES &gt; RU &gt; AU &gt; FR &gt; MX &gt; UA &gt; NZ 
 &lt;br&gt;(for authorities not listed, the earliest member takes priority)
 &lt;/li&gt;
 &lt;li&gt;if multiple documents qualify, the first listed (according to Patstat) takes priority&lt;/li&gt;
&lt;/ul&gt;
DOI: 10.17617/3.es5zsc
title: Pat-SPECTER embeddings for Patstat 2023 Fall (USPTO and EPO)

description: &lt;p&gt;&lt;strong&gt;Pat-SPECTER embeddings for all patent families as of Patstat 2023 Fall release.&lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;File &lt;code&gt;"Pat-SPECTER_EPO_patstat-2023-fall.parquet"&lt;/code&gt; contains embeddings for all patent families with an EPO member (&lt;strong&gt;3.9M&lt;/strong&gt;).&lt;/p&gt;
&lt;p&gt;File &lt;code&gt;"Pat-SPECTER_USPTO_patstat-2023-fall.parquet"&lt;/code&gt; contains embeddings for all patent families with a USPTO member (&lt;strong&gt;9.2M&lt;/strong&gt;).&lt;/p&gt;

&lt;p&gt;We encoded one representative member of the patent family according to the following rule:&lt;/p&gt;
&lt;ul&gt;
 &lt;li&gt;has English abstract&lt;/li&gt;
 &lt;li&gt;&lt;strong&gt;Authority Priority rule:&lt;/strong&gt; EP &gt; WO &gt; US &gt; CN &gt; JP &gt; KR &gt; GB &gt; CA &gt; TW &gt; DE &gt; ES &gt; RU &gt; AU &gt; FR &gt; MX &gt; UA &gt; NZ 
 &lt;br&gt;(for authorities not listed, the earliest member takes priority)
 &lt;/li&gt;
 &lt;li&gt;if multiple documents qualify, the first listed (according to Patstat) takes priority&lt;/li&gt;
&lt;/ul&gt;
DOI: 10.17617/3.2elasf
title: Further reading and extened materials examples for the impact of water incorporation on ion transport in solids

description: This file compiles an extended data set and presents specific aspects in more detail for hydration effects on ion transport in solids, in order to supply in-depth background information for specifically interested readers.
DOI: 10.17617/3.zbhlir
title: Measurement report: Number size distribution of sub-40 nm particles in the Amazon rainforest

description: This study investigates the number size distribution of sub-40 nm particles in the Amazon rainforest, highlighting their temporal variations and potential sources. The findings provide insights into the dynamics of ultrafine particles in a pristine environment.
DOI: 10.17617/3.8lo0fp
title: Datasets for Mn X-ray absorption spectroscopy and quantum chemical calculations on the ammonia-treated S2 state of the oxygen-evolving complex

description: Datasets for Mn X-ray absorption spectroscopy and quantum chemical calculations on the ammonia-treated S2 state of the oxygen-evolving complex
DOI: 10.21233/0h4e-d469
title: Lake Biwa, North Basin ostracode surface sample dataset

description: Raw data for the Lake Biwa, North Basin ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.q5kffd
title: Datasets and Supplementary Information (at full resolution) for publication DOI 10.1002/aenm.202405599

description: This dataset contains additional simulation and experimental datasets related to the publication with DOI 10.1002/aenm.202405599 .
DOI: 10.17617/3.np26ai
title: Assessing the validity of the anelastic and Boussinesq approximations to model solar inertial modes

description: This directory contains the codes and data used in the manuscript: 'Assessing the validity of the anelastic and Boussinesq approximations to model solar inertial modes' by Suprabha Mukhopadhyay, Yuto Bekki, Xiaojue Zhu, and Laurent Gizon. It also includes the computed eigenfunctions of the modes shown in Figure 6 of the manuscript for the compressible case. There is also a sample plotting script for plotting the different eigenfunctions.
description: python, 3.12.7
description: Dedalus, 3.0.3
DOI: 10.17617/3.rxblht
title: Realization of strongly-interacting Meissner phases in large bosonic flux ladders

description: Data presented in the publication.
DOI: 10.17617/3.u0p08l
title: West-German Guest Worker Data 1961-1973

description: &lt;p&gt;West-German Guest Worker Data (1961–1973) at the labor office district level.&lt;/p&gt;

&lt;p&gt;Data compiled from the West-German &lt;i&gt;Bundesanstalt für Arbeitsvermittlung und Arbeitslosenversicherung&lt;/i&gt; (now &lt;i&gt;Bundesagentur für Arbeit&lt;/i&gt;, Federal Employment Agency). We used the annual series &lt;i&gt;Anwerbung Vermittlung Beschäftigung Ausländischer Arbeitnehmer Erfahrungsbericht&lt;/i&gt; and &lt;i&gt;Ausländer Arbeitnehmer&lt;/i&gt;. These report the stock of foreign and guest workers by country of origin (Italy, Greece, Spain, Turkey, Yugoslavia, Portugal, Tunisia, Morocco).&lt;/p&gt;
&lt;p&gt;Most records are available as of 1964. Data are as of September, only in 1973 January is the reporting month.&lt;/p&gt;

&lt;p&gt;The provided shapefile map of the German Labor Office Districts was constructed using an official map on these regions (for details see the related publication). The map can be used to combine the Guest Worker data with other regional data from other administrative units (e. g. counties).&lt;/p&gt;
DOI: 10.17617/3.b6bm5r
title: ProciGen-video dataset for "InterTrack: Tracking Human Object Interaction without Object Templates" (3DV'25)

description: A large scale synthetic dataset about dynamic human-object interactions. It features about 10 hours of video with 8337 sequences and 2M images. The generation of this dataset is described in the paper "InterTrack: Tracking Human Object Interaction without Object Templates" (3DV'25).
Please check the github repo for detailed file structure of the dataset: https://github.com/xiexh20/ProciGen



If you use our data, please cite:
@inproceedings{xie2024InterTrack,
 title = {InterTrack: Tracking Human Object Interaction without Object Templates},
 author = {Xie, Xianghui and Lenssen, Jan Eric and Pons-Moll, Gerard},
 booktitle = {International Conference on 3D Vision (3DV)},
 month = {March},
 year = {2025},
}
DOI: 10.17617/3.rg7oc2
title: Demystifying Z-behavior of hydrogen in electrochemical CO reduction

description: The data related to the paper "Demystifying Z-behavior of hydrogen in electrochemical CO
reduction" (DOI: https://doi.org/10.1016/j.electacta.2024.145535) are contained inthis repository.
DOI: 10.17617/3.9xlttd
title: Material Composition Gradient Controls the Autonomous Opening of Banksia Seed Pods in Fire-prone Habitats

description: tba
DOI: 10.17617/3.lvpcs6
title: Artifact: Catch-22: Uncovering Compromised Hosts using SSH Public Keys

description: The Dataset contains the patched Zgrab2 implementation for the SSH scan as well as the bash script for executing the scan. A Readme file is provided for more clarifications.
DOI: 10.17617/3.waagkw
title: STM images of glycosaminoglycans

description: This is the raw data for STM image of glycosaminoglycans (GAGs) used. Raw STM images were given in the SXM format outputted directly from the Nanonis control software, which can be opened using WSXM or Gwyddion.
DOI: 10.17617/3.he2c4s
title: PhD thesis - Chyrene Moncada - Supplementary Information

description: Supplementary tables and videos for PhD thesis chapters
DOI: 10.17617/3.muiyc0
title: Data associated with Ceesay & Kampamnn et al. P. falciparum var gene expression in asymptomatic infections and clincial cases.

description: Data associated with Ceesay & Kampmann et al.
DOI: 10.17617/3.2f0j4z
title: Cafe-Africa data as used in Crowley et al 2025 Peroxy acetyl nitric anhydride (PAN) and peroxy acetic acid (PAA) over the Atlantic west of Africa during CAFE-Africa and the influence of biomass-burning

description: Time series of mixing ratios of PAN, PAA, NO, NO2, CO, CH3CN and black-carbon as well as aircraft location for each flight analysed during the airborne HALO campaign "CAFE-Africa" in 2018 as used in Crowley et al (Peroxy acetyl nitric anhydride (PAN) and peroxy acetic acid (PAA) over the Atlantic west of Africa during CAFE-Africa and the influence of biomass-burning).
DOI: 10.17617/3.gminax
title: Supporting Information for TIRF microscopy evanescent field calibration using tilted fluorescent microtubules.

description: Total internal reflection fluorescence microscopy has become a powerful tool to study the dynamics of sub-cellular structures and single molecules near substrate surfaces. However, the penetration depth of the evanescent field, that is, the distance at which the excitation intensity has exponentially decayed to 1/e, is often left undetermined. This presents a limit on the spatial information about the imaged structures. Here, we present a novel method to quantitatively characterize the illumination in total internal reflection fluorescence microscopy using tilted, fluorescently labelled, microtubules. We find that the evanescent field is well described by a single exponential function, with a penetration depth close to theoretically predicted values. The use of in vitro reconstituted microtubules as nanoscale probes results in a minimal perturbation of the evanescent field; excitation light scattering is eliminated and the refractive index of the sample environment is unchanged. The presented method has the potential to provide a generic tool for in situ calibration of the evanescent field.
DOI: 10.17617/3.heymfz
title: Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos

description: Motivation: The centrosome is a dynamic structure in animal cells that serves as a microtubule organizing center during mitosis and also regulates cell-cycle progression and sets polarity cues. Automated and reliable tracking of centrosomes is essential for genetic screens that study the process of centrosome assembly and maturation in the nematode Caenorhabditis elegans.
DOI: 10.21233/qveg-3z55
title: DjPo-46 vertebrate fauna dataset

description: Raw data for the DjPo-46 vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.qnt1ry
title: Automated tracing of microtubules in electron tomograms of plastic embedded samples of Caenorhabditis elegans embryos.

description: The ability to rapidly assess microtubule number in 3D image stacks from electron tomograms is essential for collecting statistically meaningful data sets. Here we implement microtubule tracing using 3D template matching. We evaluate our results by comparing the automatically traced centerlines to manual tracings in a large number of electron tomograms of the centrosome of the early Caenorhabditis elegans embryo. Furthermore, we give a qualitative description of the tracing results for three other types of samples. For dual-axis tomograms, the automatic tracing yields 4% false negatives and 8% false positives on average. For single-axis tomograms, the accuracy of tracing is lower (16% false negatives and 14% false positives) due to the missing wedge in electron tomography. We also implemented an editor specifically designed for correcting the automatic tracing. Besides, this editor can be used for annotating microtubules. The automatic tracing together with a manual correction significantly reduces the amount of manual labor for tracing microtubule centerlines so that large-scale analysis of microtubule network properties becomes feasible.
DOI: 10.17617/3.59lqby
title: Khanenko_et_al_PRB_2025

description: Datasets for publication P. Khanenko et al., Phys. Rev. B (2025).
DOI: 10.17617/3.bddohf
title: Combined RNAi and localization for functionally dissecting long non-coding RNAs data

description: Whereas methods to comprehensively study cellular roles of protein-coding genes are available, techniques to systematically investigate long noncoding RNAs (lncRNAs), which have been implicated in diverse biological pathways, are limited. Here we report combined knockdown and localization analysis of noncoding RNAs (c-KLAN) that merges functional characterization and localization approaches to study lncRNAs. Using this technique we identified transcripts that regulate mouse embryonic stem cell identity.
DOI: 10.17617/3.cgo4i3
title: Biobeam - Rigorous wave-optical simulations of light-sheet microscopy data

description: Sample-induced image-degradation remains an intricate wave-optical problem in light-sheet microscopy. Here we present biobeam, an open-source software package that enables to simulate operational light-sheet microscopes by combining data from 105–106 multiplexed and GPU-accelerated point-spread-function calculations. The wave-optical nature of these simulations leads to the faithful reproduction of spatially varying aberrations, diffraction artifacts, geometric image distortions, adaptive optics, and emergent wave optical phenom- ena, and renders image-formation in light-sheet microscopy computationally tractable.
DOI: 10.17617/3.ecc0gf
title: Compartmentalised RNA catalysis in membrane-free coacervate protocells data

description: Phase separation of mixtures of oppositely charged polymers provides a simple and direct route to compartmentalisation via complex coacervation, which may have been important for driving primitive reactions as part of the RNA world hypothesis. However, to date, RNA catalysis has not been reconciled with coacervation. Here we demonstrate that RNA catalysis is viable within coacervate microdroplets and further show that these membrane-free droplets can selectively retain longer length RNAs while permitting transfer of lower molecular weight oligonucleotides.
DOI: 10.17617/3.fdfzof
title: Content Aware Image Restoration: Pushing the Limits of Fluorescence Microscopy data

description: Fluorescence microscopy is a key driver of discoveries in the life-sciences, with observable phenomena being limited by the optics of the microscope, the chemistry of the fluorophores, and the maximum photon exposure tolerated by the sample. These limits necessitate trade- offs between imaging speed, spatial resolution, light exposure, and imaging depth. In this work we show how image restoration based on deep learning extends the range of biological phenomena observable by microscopy. On seven concrete examples we demonstrate how microscopy images can be restored even if 60-fold fewer photons are used during acquisition, how near isotropic resolution can be achieved with up to 10-fold under-sampling along the axial direction, and how tubular and granular structures smaller than the diffraction limit can be resolved at 20-times higher frame-rates compared to state-of-the-art methods. All developed image restoration methods are freely available as open source software in Python, FIJI, and KNIME.
DOI: 10.17617/3.dc72ld
title: Reversible pH-Responsive Coacervate Formation in Lipid Vesicles Activates Dormant Enzymatic Reactions data

description: In situ, reversible coacervate formation within lipid vesicles represents a key step in the development of responsive synthetic cellular models. Herein, we exploit the pH responsiveness of a polycation above and below its pKa , to drive liquid-liquid phase separation, to form single coacervate droplets within lipid vesicles. The process is completely reversible as coacervate droplets can be disassembled by increasing the pH above the pKa . We further show that pH-triggered coacervation in the presence of low concentrations of enzymes activates dormant enzyme reactions by increasing the local concentration within the coacervate droplets and changing the local environment around the enzyme. In conclusion, this work establishes a tunable, pH responsive, enzymatically active multi-compartment synthetic cell. The system is readily transferred into microfluidics, making it a robust model for addressing general questions in biology, such as the role of phase separation and its effect on enzymatic reactions using a bottom-up synthetic biology approach.
DOI: 10.17617/3.fsboqe
title: One-carbon fixation via the reductive glycine pathway exceeds yield of the Calvin cycle in bacteria

description: One-carbon (C1) feedstocks like formate could be energetically efficient substrates for sustainable microbial production of food, fuels and chemicals. Here, we replace the native energy-inefficient Calvin-Benson-Bassham (CBB) cycle in Cupriavidus necator with the more energy-efficient reductive glycine pathway for growth on formate and CO2. In chemostats, our engineered strain reaches a 17% higher biomass yield than the wild type, or any natural formatotroph using the Calvin cycle. This demonstrates the potential of synthetic metabolism to realize sustainable, bio-based production.
DOI: 10.17617/3.ixjq6y
title: Molecular Recognition and Chiral Discrimination from NMR and Multi-scale Simulations

description: This repository contains all the necessary files to reproduce the data presented in the paper: "Molecular Recognition and Chiral Discrimination from NMR and Multi-Scale Simulations." Here, the data is organized into several compressed files (.zip format), which includes: the experimental NMR acquisition files, initial molecular structures (.pdb format), configuration files (.mdp format), topology files (.itp format), and the selected frames (.xyz format) from Molecular Dynamics (MD) simulations. Additionally, it includes final optimized structures (.xyz format) from Quantum Mechanics (QM) calculations, along with data files (.txt and .dat formats) containing energy values and NMR chemical shift information.
DOI: 10.17617/3.ofv76b
title: Dataset for “Testing the top-down feedback in central vision using the reversed depth illusion”

description: Performance Accuracies in the main experiment and Performance accuracies in the secondary experiment for the paper “Testing the top-down feedback in central vision using the reversed depth illusion”
DOI: 10.17617/3.qfj7u2
title: Columnar cholinergic neurotransmission onto T5 cells of Drosophila

description: This repository includes the data that were generated for the work entitled " Columnar cholinergic neurotransmission onto T5 cells of Drosophila".
DOI: 10.17617/3.8whns4
title: Measurement error in remotely sensed fractional snow cover datasets: implications for ecological research.

description: This paper quantifies measurement error in common satellite-derived fractional snow cover datasets, and uses a case study to demonstrates how measurement error can distort conclusions in an ecological study.
DOI: 10.17617/3.lzpq3k
title: Visualizing sub-organellar lipid distribution using correlative light and electron microscopy data

description: Data for paper with title "Visualizing sub-organellar distribution of individual lipid species using correlative light and electron microscopy"
DOI: 10.17617/3.mulbnq
title: Data and Scripts for: "Deglaciation and abrupt events in a coupled comprehensive atmosphere–ocean–ice sheet–solid earth model"

description: This dataset contains all necessary data as well as python scripts to reproduce all figures in the paper entitled: "Deglaciation and abrupt events in a coupled comprehensive atmosphere–ocean–ice sheet–solid earth mode (https://doi.org/10.5194/cp-2024-55)"
DOI: 10.17617/3.mmlzak
title: Data-Driven Analysis of Electrochemical Impedance Spectroscopy Using the Loewner Framework

description: This repository provides MATLAB scripts for extracting the Distribution of Relaxation Times (DRT) from Electrochemical Impedance Spectroscopy (EIS) data using a data-driven approach based on the Loewner framework (LF). The methodology is demonstrated through the analysis of synthetic EIS data from different variants of Randles equivalent circuit models (ECMs), highlighting the capability of the LF-derived DRTs to distinguish them effectively despite their similar impedance spectra. Furthermore, the approach is validated using experimental EIS data from a ferrocyanide redox system, successfully identifying the most appropriate ECM. The repository also includes the analyzed experimental data to facilitate further validation and exploration. All necessary instructions and explanations for using the scripts are provided within the scripts themselves as comments.
description: Matlab, R2019b
DOI: 10.21233/q2gj-4286
title: Erxianyan testate amoebae surface sample dataset

description: Raw data for the Erxianyan testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.