cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9631508.v1
title: Additional file 6: of Evolution of female promiscuity in Passerides songbirds

description: The model selection approach, using AIC, to find the best multivariate PGLS model as presented in Table 2. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9631490
title: Additional file 3: of Evolution of female promiscuity in Passerides songbirds

description: Data set for 202 species used in the comparative analyses. The second worksheet lists the references for paternity studies. The third sheet calculates the sperm length CV and the proportion of EPY from total sperm length data. The fourth sheet gives accession numbers in the Avian Sperm Collection in the Natural History Museum in Oslo, and total sperm length for all sperm samples used in the calculation of sperm length CV, except for two species: Troglodytes aedon (Becky Cramer, pers. comm.) and Notiomystis cincta. (Helen Taylor, pers. comm.). For samples from India (Horornis fortipes, Larvivora brunnea, Passer rutilans and Phylloscopus occipitalis) accession numbers refer to digital photos, as no samples were exported. (XLSX 170 kb)
DOI: 10.6084/m9.figshare.9631484
title: Additional file 2: of Evolution of female promiscuity in Passerides songbirds

description: NEXUS file of the 1000 phylogenetic trees used for analysis in this paper. (TXT 5863 kb)
DOI: 10.6084/m9.figshare.9631490.v1
title: Additional file 3: of Evolution of female promiscuity in Passerides songbirds

description: Data set for 202 species used in the comparative analyses. The second worksheet lists the references for paternity studies. The third sheet calculates the sperm length CV and the proportion of EPY from total sperm length data. The fourth sheet gives accession numbers in the Avian Sperm Collection in the Natural History Museum in Oslo, and total sperm length for all sperm samples used in the calculation of sperm length CV, except for two species: Troglodytes aedon (Becky Cramer, pers. comm.) and Notiomystis cincta. (Helen Taylor, pers. comm.). For samples from India (Horornis fortipes, Larvivora brunnea, Passer rutilans and Phylloscopus occipitalis) accession numbers refer to digital photos, as no samples were exported. (XLSX 170 kb)
DOI: 10.6084/m9.figshare.9631472
title: Additional file 8: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Up- and downregulated gene list for ASCs expanded in FBS between P0 and subsequent passages. Complete list of up- and downregulated genes for FBS-ASCs between P0 and subsequent passages (P0 - P1, P0 - P2, P0 - P3, P0 - P4, P0 - P5). This data relates to Fig.Â 3a. (XLSX 166 kb)
DOI: 10.6084/m9.figshare.9631475
title: Additional file 9: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Up- and downregulated gene list for ASCs expanded in pHPL between P0 and subsequent passages. Complete list of up- and downregulated genes for pHPL-ASCs between P0 and subsequent passages (P0 - P1, P0 - P2, P0 - P3, P0 - P4, P0 - P5). This data relates to Fig.Â 3b. (XLSX 206 kb)
DOI: 10.6084/m9.figshare.9631478
title: Additional file 1: of Evolution of female promiscuity in Passerides songbirds

description: Accession numbers for all species used to create the phylogenetic tree. All sequences downloaded from the GenBank ( http://www.ncbi.nlm.nih.gov/genbank ) or BOLD ( http://www.boldsystems.org ) database. In two instances (marked in yellow) sequences were lacking from the target species, and we used surrogate sequences from a closely related species. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.9631484.v1
title: Additional file 2: of Evolution of female promiscuity in Passerides songbirds

description: NEXUS file of the 1000 phylogenetic trees used for analysis in this paper. (TXT 5863 kb)
DOI: 10.6084/m9.figshare.9631469
title: Additional file 7: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Gene ontology terms for ASCs expanded in pHPL between subsequent passages. Complete list of enriched GO terms for pHPL-ASCs between subsequent passages (P0 - P1, P1 - P2, P2 - P3, P3 - P4, P4 - P5). This data relates to TableÂ 3. (XLSX 349 kb)
DOI: 10.6084/m9.figshare.9631472.v1
title: Additional file 8: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Up- and downregulated gene list for ASCs expanded in FBS between P0 and subsequent passages. Complete list of up- and downregulated genes for FBS-ASCs between P0 and subsequent passages (P0 - P1, P0 - P2, P0 - P3, P0 - P4, P0 - P5). This data relates to Fig.Â 3a. (XLSX 166 kb)
DOI: 10.6084/m9.figshare.9631469.v1
title: Additional file 7: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Gene ontology terms for ASCs expanded in pHPL between subsequent passages. Complete list of enriched GO terms for pHPL-ASCs between subsequent passages (P0 - P1, P1 - P2, P2 - P3, P3 - P4, P4 - P5). This data relates to TableÂ 3. (XLSX 349 kb)
DOI: 10.6084/m9.figshare.9631475.v1
title: Additional file 9: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Up- and downregulated gene list for ASCs expanded in pHPL between P0 and subsequent passages. Complete list of up- and downregulated genes for pHPL-ASCs between P0 and subsequent passages (P0 - P1, P0 - P2, P0 - P3, P0 - P4, P0 - P5). This data relates to Fig.Â 3b. (XLSX 206 kb)
DOI: 10.6084/m9.figshare.9631466
title: Additional file 6 of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Gene ontology terms for ASCs expanded in FBS between subsequent passages. Complete list of enriched GO terms for FBS-ASCs between subsequent passages (P0 - P1, P1 - P2, P2 - P3, P3 - P4, P4 - P5). This data relates to Table 2. (XLSX 516 kb)
DOI: 10.6084/m9.figshare.9631454
title: Additional file 4: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Up- and downregulated gene list for ASCs expanded in FBS between subsequent passages. Complete list of up- and downregulated genes for FBS-ASCs between subsequent passages (P0 - P1, P1 - P2, P2 - P3, P3 - P4, P4 - P5). This data relates to Fig.Â 2a. (XLSX 88 kb)
DOI: 10.6084/m9.figshare.9631463
title: Additional file 5: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Up- and downregulated gene list for ASCs expanded in pHPL between subsequent passages. Complete list of up- and downregulated genes for pHPL-ASCs between subsequent passages (P0 - P1, P1 - P2, P2 - P3, P3 - P4, P4 - P5). This data relates to Fig.Â 2b. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.9631466.v1
title: Additional file 6 of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Gene ontology terms for ASCs expanded in FBS between subsequent passages. Complete list of enriched GO terms for FBS-ASCs between subsequent passages (P0 - P1, P1 - P2, P2 - P3, P3 - P4, P4 - P5). This data relates to Table 2. (XLSX 516 kb)
DOI: 10.6084/m9.figshare.9631454.v1
title: Additional file 4: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Up- and downregulated gene list for ASCs expanded in FBS between subsequent passages. Complete list of up- and downregulated genes for FBS-ASCs between subsequent passages (P0 - P1, P1 - P2, P2 - P3, P3 - P4, P4 - P5). This data relates to Fig.Â 2a. (XLSX 88 kb)
DOI: 10.6084/m9.figshare.9631448
title: Additional file 3 of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Gene ontology terms for ASCs serially expanded in FBS and pHPL. Complete list of enriched GO terms for ASCs serially expanded in pHPL or FBS (P0 â P5). This data relates to Table 1. (XLSX 1017 kb)
DOI: 10.6084/m9.figshare.9631463.v1
title: Additional file 5: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Up- and downregulated gene list for ASCs expanded in pHPL between subsequent passages. Complete list of up- and downregulated genes for pHPL-ASCs between subsequent passages (P0 - P1, P1 - P2, P2 - P3, P3 - P4, P4 - P5). This data relates to Fig.Â 2b. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.9631445
title: Additional file 2: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Up- and downregulated gene list for ASCs serially expanded in FBS and pHPL. Complete list of up- and downregulated genes for ASCs serially expanded in pHPL or FBS (P0 â P5). This data relates to Fig.Â 1. (XLSX 193 kb)
DOI: 10.6084/m9.figshare.9631445.v1
title: Additional file 2: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Up- and downregulated gene list for ASCs serially expanded in FBS and pHPL. Complete list of up- and downregulated genes for ASCs serially expanded in pHPL or FBS (P0 â P5). This data relates to Fig.Â 1. (XLSX 193 kb)
DOI: 10.6084/m9.figshare.9631448.v1
title: Additional file 3 of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Gene ontology terms for ASCs serially expanded in FBS and pHPL. Complete list of enriched GO terms for ASCs serially expanded in pHPL or FBS (P0 â P5). This data relates to Table 1. (XLSX 1017 kb)
DOI: 10.6084/m9.figshare.9631430
title: Additional file 12: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: FBS and pHPL-ASC passage specific gene expression profile. A complete list of genes comprising the FBS and pHPL-ASC passage specific gene expression profile. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.9631433
title: Additional file 13: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: FBS and pHPL-ASC medium supplementation specific gene expression profile. A complete list of genes comprising the FBS and pHPL-ASC medium supplementation specific gene expression profile. (XLSX 67 kb)
DOI: 10.6084/m9.figshare.9631436
title: Additional file 14: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: ASC gene signature irrespective of cell passage number and/or media supplement used. A complete list of genes comprising the ASC gene signature irrespective of cell passage number and/or media supplement used. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.9631430.v1
title: Additional file 12: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: FBS and pHPL-ASC passage specific gene expression profile. A complete list of genes comprising the FBS and pHPL-ASC passage specific gene expression profile. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.9631433.v1
title: Additional file 13: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: FBS and pHPL-ASC medium supplementation specific gene expression profile. A complete list of genes comprising the FBS and pHPL-ASC medium supplementation specific gene expression profile. (XLSX 67 kb)
DOI: 10.6084/m9.figshare.9631436.v1
title: Additional file 14: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: ASC gene signature irrespective of cell passage number and/or media supplement used. A complete list of genes comprising the ASC gene signature irrespective of cell passage number and/or media supplement used. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.9631421
title: Additional file 10: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Gene ontology terms for ASCs expanded in FBS between P0 and subsequent passages. Complete list of enriched GO terms for FBS-ASCs between P0 and subsequent passages (P0 - P1, P0 - P2, P0 - P3, P0 - P4, P0 - P5). This data relates to Table 4. (XLSX 1145 kb)
DOI: 10.6084/m9.figshare.9631424
title: Additional file 11: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Gene ontology terms for ASCs expanded in pHPL between P0 and subsequent passages. Complete list of enriched GO terms for pHPL-ASCs between P0 and subsequent passages (P0 - P1, P0 - P2, P0 - P3, P0 - P4, P0 - P5). This data relates to Table 5. (XLSX 1289 kb)
DOI: 10.6084/m9.figshare.9631421.v1
title: Additional file 10: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Gene ontology terms for ASCs expanded in FBS between P0 and subsequent passages. Complete list of enriched GO terms for FBS-ASCs between P0 and subsequent passages (P0 - P1, P0 - P2, P0 - P3, P0 - P4, P0 - P5). This data relates to Table 4. (XLSX 1145 kb)
DOI: 10.6084/m9.figshare.9631424.v1
title: Additional file 11: of The effect of medium supplementation and serial passaging on the transcriptome of human adipose-derived stromal cells expanded in vitro

description: Gene ontology terms for ASCs expanded in pHPL between P0 and subsequent passages. Complete list of enriched GO terms for pHPL-ASCs between P0 and subsequent passages (P0 - P1, P0 - P2, P0 - P3, P0 - P4, P0 - P5). This data relates to Table 5. (XLSX 1289 kb)
DOI: 10.6084/m9.figshare.9631409
title: Additional file 9: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S6. Primers of candidate ORs and antennal IRs in Bactrocera minax used for RT-qPCR. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9631406
title: Additional file 8: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S5. GenBank accession numbers of chemosensory genes used in phylogenetic analyses. (XLSX 231 kb)
DOI: 10.6084/m9.figshare.9631406.v1
title: Additional file 8: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S5. GenBank accession numbers of chemosensory genes used in phylogenetic analyses. (XLSX 231 kb)
DOI: 10.6084/m9.figshare.9631409.v1
title: Additional file 9: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S6. Primers of candidate ORs and antennal IRs in Bactrocera minax used for RT-qPCR. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9631400
title: Additional file 7: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S4. FPKM value of candidate chemosensory genes in Bactrocera minax. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.9631400.v1
title: Additional file 7: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S4. FPKM value of candidate chemosensory genes in Bactrocera minax. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.9631388
title: Additional file 4: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S3. Candidate chemosensory genes in Bactrocera minax. Candidate ORs (sheet 1), IRs (sheet 2), GRs (sheet 3), SNMPs (sheet 4), OBPs (sheet 5), CSPs (sheet 6) and with gene name, predicted protein sequences, and the annotation in NCBI-Nr database, predicted protein domains and expression abundance. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.9631388.v1
title: Additional file 4: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S3. Candidate chemosensory genes in Bactrocera minax. Candidate ORs (sheet 1), IRs (sheet 2), GRs (sheet 3), SNMPs (sheet 4), OBPs (sheet 5), CSPs (sheet 6) and with gene name, predicted protein sequences, and the annotation in NCBI-Nr database, predicted protein domains and expression abundance. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.9631373
title: Additional file 2: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S2. Functional annotation of the unigenes in different databases. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9631370
title: Additional file 1: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S1. Overview of the sequencing and assembly process. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9631370.v1
title: Additional file 1: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S1. Overview of the sequencing and assembly process. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9631373.v1
title: Additional file 2: of Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis

description: Table S2. Functional annotation of the unigenes in different databases. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9631364
title: Additional file 6: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Downregulated DEGs in red blood cells. Raw DEG data for downregulated genes in red blood cells. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.9631361
title: Additional file 5: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Downregulated DEGs in spleen. Raw DEG data for downregulated genes in spleen. (XLSX 253 kb)
DOI: 10.6084/m9.figshare.9631361.v1
title: Additional file 5: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Downregulated DEGs in spleen. Raw DEG data for downregulated genes in spleen. (XLSX 253 kb)
DOI: 10.6084/m9.figshare.9631364.v1
title: Additional file 6: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Downregulated DEGs in red blood cells. Raw DEG data for downregulated genes in red blood cells. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.9631355
title: Additional file 4: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Downregulated DEGs in hypothalamus. Raw DEG data for downregulated genes in hypothalamus. (XLSX 141 kb)
DOI: 10.6084/m9.figshare.9631346
title: Additional file 2: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Upregulated DEGs in spleen. Raw DEG data for upregulated genes in spleen. (XLSX 267 kb)
DOI: 10.6084/m9.figshare.9631352
title: Additional file 3: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Upregulated DEGs in red blood cells. Raw DEG data for upregulated genes in red blood cells. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.9631355.v1
title: Additional file 4: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Downregulated DEGs in hypothalamus. Raw DEG data for downregulated genes in hypothalamus. (XLSX 141 kb)
DOI: 10.6084/m9.figshare.9631343
title: Additional file 1: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Upregulated DEGs in hypothalamus. Raw DEG data for upregulated genes in hypothalamus. (XLSX 344 kb)
DOI: 10.6084/m9.figshare.9631352.v1
title: Additional file 3: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Upregulated DEGs in red blood cells. Raw DEG data for upregulated genes in red blood cells. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.9631346.v1
title: Additional file 2: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Upregulated DEGs in spleen. Raw DEG data for upregulated genes in spleen. (XLSX 267 kb)
DOI: 10.6084/m9.figshare.9631343.v1
title: Additional file 1: of Transcriptomic analysis of immune response to bacterial lipopolysaccharide in zebra finch (Taeniopygia guttata)

description: Upregulated DEGs in hypothalamus. Raw DEG data for upregulated genes in hypothalamus. (XLSX 344 kb)
DOI: 10.6084/m9.figshare.9631205
title: Additional file 1: of Estimation of AT and GC content distributions of nucleotide substitution rates in bacterial core genomes

description: Output from JAGS run of Îą and Î˛ estimates for each of the 35 species/core genomes. (TXT 6 kb)
DOI: 10.6084/m9.figshare.9631205.v1
title: Additional file 1: of Estimation of AT and GC content distributions of nucleotide substitution rates in bacterial core genomes

description: Output from JAGS run of Îą and Î˛ estimates for each of the 35 species/core genomes. (TXT 6 kb)
DOI: 10.6084/m9.figshare.9631157
title: Additional file 1: of Evolutionary patterns of diadromy in fishes: more than a transitional state between marine and freshwater

description: Table of Species character state assignment. (XLS 832 kb)
DOI: 10.6084/m9.figshare.9631151
title: Additional file 1: of A little bit of sex prevents mutation accumulation even in apomictic polyploid plants

description: Microsatellite data matrix. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.9631157.v1
title: Additional file 1: of Evolutionary patterns of diadromy in fishes: more than a transitional state between marine and freshwater

description: Table of Species character state assignment. (XLS 832 kb)
DOI: 10.6084/m9.figshare.9631151.v1
title: Additional file 1: of A little bit of sex prevents mutation accumulation even in apomictic polyploid plants

description: Microsatellite data matrix. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.9631091
title: Additional file 6: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S6. GO annotations of up- (Sheet 1) and down-regulated (Sheet 2) DEGs and background references (Sheet 3) used in GO enrichment analysis. (XLSX 9087 kb)
DOI: 10.6084/m9.figshare.9631085
title: Additional file 5: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S5. DEGs related to typical resistance mechanisms against F. graminearum and F. pseudograminearum. Log2Fold Changes for each gene in different comparisons were listed (FDR