cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48331/scielo.b1hed1/knk1mm
title: Palestra ABEC -SciELO 25 Anos 06_03_23 - Diversidade de gênero na publicação científica.pptx

description: :unav
DOI: 10.48331/scielo.b1hed1
title: Diversidade e Equidade de gênero na publicação científica

description: Apresentação da Dra Ana Heredia realizada no Seminário ABEC Brasil – SciELO 25 Anos: Equidade de gênero na publicação científica. Página do evento: https://25.scielo.org/seminarios/deia-abec/
DOI: 10.35078/yuvxra
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Pirapora | Município: João Pinheiro

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.6084/m9.figshare.22223227
title: Data Prieto et al.xlsx

description: Dataset for manuscript <strong>Lack of response to conspecific juvenile vocalizations in two avian brood parasites</strong>
DOI: 10.6084/m9.figshare.22223227.v1
title: Data Prieto et al.xlsx

description: Dataset for manuscript <strong>Lack of response to conspecific juvenile vocalizations in two avian brood parasites</strong>
DOI: 10.5067/kmemd53mttu8
title: Sounder SIPS: Suomi NPP ATMS Level 2 RAMSES2 Support V3
DOI: 10.5067/ft9grabk1cmk
title: Sounder SIPS: Suomi NPP ATMS Level 2 RAMSES2 Standard: Atmosphere, precipitation and surface geophysical state V3
DOI: 10.5067/weo3kik1gbgt
title: Sounder SIPS: JPSS-1 ATMS Level 2 RAMSES2 Support V3
DOI: 10.5067/69y2r9bjajs3
title: Sounder SIPS: JPSS-1 ATMS Level 2 RAMSES2 Standard: Atmosphere, precipitation and surface geophysical state V3
DOI: 10.25345/c5fj29p4f
title: MassIVE MSV000091417 - Integrative systems biology characterizes immune-mediated neurodevelopmental changes in murine Zika Virus microcephaly
title: A new mouse model for congenital Zika infection in a wildtype, immunocompetent background employing intraplacental infection resulted in productive infection of embryonic brains and features of microcephaly during early development (E10.5-16.5). Gross morphological characterization showed translational relevance for understanding the viral neuropathogenesis and Zika-associated microcephaly in humans. Thus, an integrated, multi-omics (RNA-sequencing, proteomics) analysis of fetal brain tissues was performed to understand pathways perturbed by viral infection in developing brains. These analyses identified virus-induced defects in cell cycle progression and neurodevelopment, in S-phase DNA replication and NEUROD2/TBR2 transcription factor cascades, respectively. Among the most significant responses was induction of innate immune programs in ZIKV-infected brains, including immunoproteasome activation and MHC-I antigen display associated with immune cell infiltration and neuronal death during early development. Identification of specific components within major pathways contributing to viral infection-induced effects on neurodevelopment provides novel targets for therapeutic intervention against neurotropic infections and ZIKV-associated microcephaly specifically.
DOI: 10.5281/zenodo.7698665
title: X-ray structures of HIV-1 protease

description: As of March 1, 2023, there were 233 X-ray structures of HIV-1 protease available in the RCSB PDB database (https://www.rcsb.org/). Out of these structures, 219 had ligands bound in the active site while 14 did not have any ligands. To prepare the structures for analysis, we removed water, ions, and solvent molecules, extracted the ligands from the receptors, and aligned all the structures. Each HIV-1 protease structure is identified by its PDB ID (&lt;pdbid&gt;.pdb) while the corresponding ligand structures are named as ligs_&lt;pdbdid&gt;.pdb.
DOI: 10.5281/zenodo.7698664
title: X-ray structures of HIV-1 protease

description: As of March 1, 2023, there were 233 X-ray structures of HIV-1 protease available in the RCSB PDB database (https://www.rcsb.org/). Out of these structures, 219 had ligands bound in the active site while 14 did not have any ligands. To prepare the structures for analysis, we removed water, ions, and solvent molecules, extracted the ligands from the receptors, and aligned all the structures. Each HIV-1 protease structure is identified by its PDB ID (&lt;pdbid&gt;.pdb) while the corresponding ligand structures are named as ligs_&lt;pdbdid&gt;.pdb.
DOI: 10.5281/zenodo.6839683
title: Simulated genomes from manuscript "On the Genes, Genealogies and Geographies of Quebec"

description: Tree sequences of simulated whole genomes of 1.4M present day individuals with at least four grandparents linked to the BALSAC French-Canadian pedigree.<br> <br> Although the tree sequences have been censored to remove personal identifying information, we have included temporal (decade) and spatial (latitude and longitude) information for the 1.4M samples and their ~2M genealogically recoded genetic ancestors.<br> <br> <strong>Note : These data are associated with a manuscript preprint and are subject to change during the peer review process.</strong> To avoid version problems, we provide only the first nine autosomes. Please contact the authors for early access to the tree sequences of the other autosomes.
DOI: 10.5281/zenodo.7702392
title: Simulated genomes from manuscript "On the Genes, Genealogies and Geographies of Quebec"

description: Tree sequences of simulated whole genomes of 1.4M present day individuals with at least four grandparents linked to the BALSAC French-Canadian pedigree.<br> <br> Although the tree sequences have been censored to remove personal identifying information, we have included temporal (decade) and spatial (latitude and longitude) information for the 1.4M samples and their ~2M genealogically recoded genetic ancestors.
DOI: 10.5281/zenodo.6839682
title: Simulated genomes from manuscript "On the Genes, Genealogies and Geographies of Quebec"

description: Tree sequences of simulated whole genomes of 1.4M present day individuals with at least four grandparents linked to the BALSAC French-Canadian pedigree.<br> <br> Although the tree sequences have been censored to remove personal identifying information, we have included temporal (decade) and spatial (latitude and longitude) information for the 1.4M samples and their ~2M genealogically recoded genetic ancestors.
DOI: 10.48529/y5hp-am14
title: High Frequency Phone Survey 2020-2023
title: BFA_2020-2023_HFPS_v14_M
DOI: 10.48529/6znd-3a32
title: Impact Evaluation of Low-Cost In-Line Chlorination Systems in Urban Dhaka on Water Quality and Child Health 2015, Follow-up Survey
title: BGD_2015_LCCSIE-FU_v01_M
DOI: 10.48529/8mms-5216
title: The Effects of Community Health Worker Visits and Primary Care Subsidies on Health Behavior and Health Outcomes for Children in Urban Mali 2014
title: MLI_2014_CHWV-URB_v01_M
DOI: 10.48529/a2b6-cx57
title: COVID-19 High Frequency Phone Surveys for Venezuelans 2021-2022
title: ECU_2021_HFPS-W2-VEN_v01_M
DOI: 10.48529/4h78-tf43
title: Surveys of the Sustainable Programme Incorporating Nutrition & Games 2012-2017
title: WLD_2012-2017_SPRING_v01_M
DOI: 10.48529/eh27-na05
title: High-Frequency Phone Survey 2020-2023
title: UGA_2020_HFPS_v11_M
DOI: 10.48529/v6mh-zd22
title: World Bank Group Country Survey 2022
title: RWA_2022_WBCS_v01_M
DOI: 10.48529/ykd7-zc81
title: World Bank Group Country Survey 2022
title: TJK_2022_WBCS_v01_M
DOI: 10.48529/zd8g-wq80
title: High Frequency Phone Survey COVID-19, 2020-2022
title: SDN_2020-2022_HFPS_v01_M
DOI: 10.48529/crvv-1c85
title: World Bank Group Country Survey 2022
title: PHL_2022_WBCS_v01_M
DOI: 10.48529/2zna-x647
title: World Bank Group Country Survey 2022
title: KSV_2022_WBCS_v01_M
DOI: 10.48529/5n7c-qw63
title: World Bank Group Country Survey 2022
title: THA_2022_WBCS_v01_M
DOI: 10.48529/h1fg-cs83
title: World Bank Group Country Survey 2022
title: NER_2022_WBCS_v01_M
DOI: 10.48529/3e1t-ck26
title: World Bank Group Country Survey 2022
title: PER_2022_WBCS_v01_M
DOI: 10.48529/1d1v-ay29
title: High-Frequency Monitoring of COVID-19 Impacts 2020-2022
title: IDN_2020_HFMCI_v05_M
DOI: 10.48529/hwfv-9021
title: World Bank Group Country Survey 2022
title: ECU_2022_WBCS_v01_M
DOI: 10.48529/htrk-n978
title: COVID-19 High Frequency Survey 2020-2022
title: GEO_2020-2022_HFS_v07_M
DOI: 10.6084/m9.figshare.21976961
title: Skeleton Clustering: Dimension-Free Density-Aided Clustering

description: We introduce a density-aided clustering method called Skeleton Clustering that can detect clusters in multivariate and even high-dimensional data with irregular shapes. To bypass the curse of dimensionality, we propose surrogate density measures that are less dependent on the dimension but have intuitive geometric interpretations. The clustering framework constructs a concise representation of the given data as an intermediate step and can be thought of as a combination of prototype methods, density-based clustering, and hierarchical clustering. We show by theoretical analysis and empirical studies that the skeleton clustering leads to reliable clusters in multivariate and high-dimensional scenarios. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.21976961.v1
title: Skeleton Clustering: Dimension-Free Density-Aided Clustering

description: We introduce a density-aided clustering method called Skeleton Clustering that can detect clusters in multivariate and even high-dimensional data with irregular shapes. To bypass the curse of dimensionality, we propose surrogate density measures that are less dependent on the dimension but have intuitive geometric interpretations. The clustering framework constructs a concise representation of the given data as an intermediate step and can be thought of as a combination of prototype methods, density-based clustering, and hierarchical clustering. We show by theoretical analysis and empirical studies that the skeleton clustering leads to reliable clusters in multivariate and high-dimensional scenarios. Supplementary materials for this article are available online.
DOI: 10.5281/zenodo.7702758
title: Compensatory responses differ between parental tasks in a songbird species - Dataset

description: Dataset relative to manuscript number A22-00211R2
DOI: 10.5281/zenodo.7702757
title: Compensatory responses differ between parental tasks in a songbird species - Dataset

description: Dataset relative to manuscript number A22-00211R2
DOI: 10.57745/m0kltc
title: DATASET_OUTPUT.tab

description: Model outputs (viable states for 2050)
DOI: 10.57745/qsbuex
title: AgRIPE_2050_2022_v6_Generalized3_mod_JP_JFS.R

description: Model code in R
DOI: 10.57745/wvb21j
title: ANCOVA - ASSUMPTIONS - TESTS.R

description: ANCOVA code in R
DOI: 10.5281/zenodo.7694409
title: Supporting data for "The ionospheric effects of the 2022 Hunga Tonga Volcano eruption and the associated impacts on GPS Precise Point Positioning across the Australian region"

description: This dataset contains the GPS Vertical Total Electron Content (TEC) data, the Rate of TEC, and the GPS Precise Point Positioning convergence time results as presented in Carter et al. (2023). For access to the raw datasets used in the analysis, the reader is referred to details in Carter et al. (2023). Carter, B. A., R. Pradipta, T. Dao, J. L. Currie, S. Choy, P. Wilkinson, P. Maher, R. Marshall, K. Harima, M. LeHuy, T. Nguyen Chien, T. Nguyen Ha, T. J. Harris (2023) The ionospheric effects of the 2022 Hunga Tonga Volcano eruption and the associated impacts on GPS Precise Point Positioning across the Australian region, Submitted to Space Weather, March, 2023.
DOI: 10.5281/zenodo.7694408
title: Supporting data for "The ionospheric effects of the 2022 Hunga Tonga Volcano eruption and the associated impacts on GPS Precise Point Positioning across the Australian region"

description: This dataset contains the GPS Vertical Total Electron Content (TEC) data, the Rate of TEC, and the GPS Precise Point Positioning convergence time results as presented in Carter et al. (2023). For access to the raw datasets used in the analysis, the reader is referred to details in Carter et al. (2023). Carter, B. A., R. Pradipta, T. Dao, J. L. Currie, S. Choy, P. Wilkinson, P. Maher, R. Marshall, K. Harima, M. LeHuy, T. Nguyen Chien, T. Nguyen Ha, T. J. Harris (2023) The ionospheric effects of the 2022 Hunga Tonga Volcano eruption and the associated impacts on GPS Precise Point Positioning across the Australian region, Submitted to Space Weather, March, 2023.
DOI: 10.5281/zenodo.7702767
title: [IO Islamic 254] لبّ لباب

description: <strong>Lubb-i-Lubâb.</strong> <strong>This manuscript is now IO Islamic 1086 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 254 here with notations and hyperlinks].</strong> 1086 Lubb-i-Lubâb (لبّ لباب). Extracts from the Selections of Jalâl-aldin Rûmî’s mathnawî, arranged by Ḥusain bin ‘Alî albaihaḳî alkâshifi (see this name on fol. 3<sup>a</sup>, l. 10), that is Wâ’iż Kâshifî (see Nos. 158-161 and 757-767 in this Cat.), who died A.H. 910 (A.D. 1504); comp. Bodleian Cat, Nos. 661 and 662; W. Pertsch, Berlin Cat., pp. 796 and 797, and A. Sprenger, Catal., p. 491. It has a preface in prose. Beginning of the preface: عين اوّل در جوامع اطوار شريعت در هفت‘ نهر نهر اوّل سه رشحه‘ رشحۀ اوّل ايمان رشحۀ دوم شهادت رشحۀ سيوم عبادت الخ. The beginning, quoted by Pertsch and Sprenger, is found here on fol. 2<sup>b</sup>, l. 7: بعد از تقديم وظائف ثناء حضرت واجب الوجود الخ. Beginning of the selections, on fol. 3<sup>b</sup>, last line: اى كمينه بخششت ملك جهان الخ. The full title of the work occurs on fol. 3<sup>a</sup>, last line:نام اين لبّ لباب معنوى – انتخاب انتخاب مثنوى That is to say: the title of Ḥusain al-Wâ’iż alkâshifî’s original selections was لباب معنوى, from which these shorter extracts (لبّ) were made. Two other انتخاب مثنوى are noticed in Rieu ii. p. 592<sup>b</sup>; and W. Pertsch, Berlin Cat., pp. 795 and 796. Collated throughout. This copy was finished by Gîsû Râi for his own use, the 2nd of Dhû-alḳa’dah, in the 9th year of Muḥammadshâh’s reign (=1140, A.D. 1728, June 10). Two entries of former owners from A.H. 1181 (A.D. 1767, 1768), and 1195 (A.D. 1781), on fol. 1<sup>a</sup> and the fly-leaf. No. 254, ff. 1-274, ll. 15; careless Nasta’lîḳ; size, 8<sup>7/8</sup> in. by 4<sup>7/8</sup> in.
DOI: 10.5281/zenodo.7702766
title: [IO Islamic 254] لبّ لباب

description: <strong>Lubb-i-Lubâb.</strong> <strong>This manuscript is now IO Islamic 1086 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 254 here with notations and hyperlinks].</strong> 1086 Lubb-i-Lubâb (لبّ لباب). Extracts from the Selections of Jalâl-aldin Rûmî’s mathnawî, arranged by Ḥusain bin ‘Alî albaihaḳî alkâshifi (see this name on fol. 3<sup>a</sup>, l. 10), that is Wâ’iż Kâshifî (see Nos. 158-161 and 757-767 in this Cat.), who died A.H. 910 (A.D. 1504); comp. Bodleian Cat, Nos. 661 and 662; W. Pertsch, Berlin Cat., pp. 796 and 797, and A. Sprenger, Catal., p. 491. It has a preface in prose. Beginning of the preface: عين اوّل در جوامع اطوار شريعت در هفت‘ نهر نهر اوّل سه رشحه‘ رشحۀ اوّل ايمان رشحۀ دوم شهادت رشحۀ سيوم عبادت الخ. The beginning, quoted by Pertsch and Sprenger, is found here on fol. 2<sup>b</sup>, l. 7: بعد از تقديم وظائف ثناء حضرت واجب الوجود الخ. Beginning of the selections, on fol. 3<sup>b</sup>, last line: اى كمينه بخششت ملك جهان الخ. The full title of the work occurs on fol. 3<sup>a</sup>, last line:نام اين لبّ لباب معنوى – انتخاب انتخاب مثنوى That is to say: the title of Ḥusain al-Wâ’iż alkâshifî’s original selections was لباب معنوى, from which these shorter extracts (لبّ) were made. Two other انتخاب مثنوى are noticed in Rieu ii. p. 592<sup>b</sup>; and W. Pertsch, Berlin Cat., pp. 795 and 796. Collated throughout. This copy was finished by Gîsû Râi for his own use, the 2nd of Dhû-alḳa’dah, in the 9th year of Muḥammadshâh’s reign (=1140, A.D. 1728, June 10). Two entries of former owners from A.H. 1181 (A.D. 1767, 1768), and 1195 (A.D. 1781), on fol. 1<sup>a</sup> and the fly-leaf. No. 254, ff. 1-274, ll. 15; careless Nasta’lîḳ; size, 8<sup>7/8</sup> in. by 4<sup>7/8</sup> in.
DOI: 10.5281/zenodo.7702780
title: [IO Islamic 3348] جواهر مولوى و لآلئ مثنوى

description: <strong>Jawâhir-i-maulawî u la’âlî-i-mathnawî.</strong> <strong>This manuscript is now IO Islamic 1087 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 3348 here with notations and hyperlinks].</strong> 1087 Jawâhir-i-maulawî u la’âlî-i-mathnawî ( جواهر مولوى و لآلئ<sup>1</sup> مثنوى). A shorter selection of extracts from Jalâl-aldîn Rûmî’s mathnawî, made at the request of some Ṣûfic friends, by Maulânâ Abûbakr alshâshî (مولانا ابوبكر الشاشى), see fol. 1<sup>b</sup>, l.4, and divided into 63 bâbs. The title appears on fol. 2<sup>a</sup>, l. 7 (that given on fol. 1<sup>a</sup>, viz. لبّ لباب مختصر مثنوئ مولوى روم, is incorrect). Most of the headings of the 63 bâbs are left blank; the few which are marked are: 1.باب اوّل در بيان نى و سماع, on fol. 2<sup>a</sup>, beginning with the initial bait of the mathnawî: بشنو از نى چون حكايت ميكند وز جدائيها شكايت ميكند 2.دربيان صوفى و تصوّف و صفا, on fol.3<sup>b</sup>; 5.در بيان زهد, on fol. 6<sup>b</sup>; 10.در بيان تقوئ يقين ورضا, on fol. 12<sup>a</sup>; 11.در بيان تواضع و مذمّت كردن عجب, on fol. 13<sup>a</sup>; 12.در بيان مقام (؟ حزم) جزم, on fol. 14<sup>b</sup>; and 13. در بيان مقام وفا بعهد on fol. 15<sup>a</sup>. Beginning of the short prose-preface: الحمد لله حمد الشاكرين و الصلوة على خير الذاكرين محمّد و آله الطاهرين الطيّبين اجمعين ‘ ميگويد شيخ الشيوخ قطب العارفين رئيس اهل اليقين زين الملّة و الدين مولانا ابوبكر الشاشى الخ Dated the 19th of Dhû-alḥijjah, A.H. 1087 (A.D. 1677, Feb. 22). No. 3348, olim 19. J. 6, ff. 96, 2 coll., each ll. 11; Nasta’lîḳ; size, 6<sup>5/8</sup> in. by 3<sup>5/8</sup> in. <sup>1</sup>This word is spoiled in the text; there seems to have originally been written لعل, which has later been corrected.
DOI: 10.5281/zenodo.7702779
title: [IO Islamic 3348] جواهر مولوى و لآلئ مثنوى

description: <strong>Jawâhir-i-maulawî u la’âlî-i-mathnawî.</strong> <strong>This manuscript is now IO Islamic 1087 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 3348 here with notations and hyperlinks].</strong> 1087 Jawâhir-i-maulawî u la’âlî-i-mathnawî ( جواهر مولوى و لآلئ<sup>1</sup> مثنوى). A shorter selection of extracts from Jalâl-aldîn Rûmî’s mathnawî, made at the request of some Ṣûfic friends, by Maulânâ Abûbakr alshâshî (مولانا ابوبكر الشاشى), see fol. 1<sup>b</sup>, l.4, and divided into 63 bâbs. The title appears on fol. 2<sup>a</sup>, l. 7 (that given on fol. 1<sup>a</sup>, viz. لبّ لباب مختصر مثنوئ مولوى روم, is incorrect). Most of the headings of the 63 bâbs are left blank; the few which are marked are: 1.باب اوّل در بيان نى و سماع, on fol. 2<sup>a</sup>, beginning with the initial bait of the mathnawî: بشنو از نى چون حكايت ميكند وز جدائيها شكايت ميكند 2.دربيان صوفى و تصوّف و صفا, on fol.3<sup>b</sup>; 5.در بيان زهد, on fol. 6<sup>b</sup>; 10.در بيان تقوئ يقين ورضا, on fol. 12<sup>a</sup>; 11.در بيان تواضع و مذمّت كردن عجب, on fol. 13<sup>a</sup>; 12.در بيان مقام (؟ حزم) جزم, on fol. 14<sup>b</sup>; and 13. در بيان مقام وفا بعهد on fol. 15<sup>a</sup>. Beginning of the short prose-preface: الحمد لله حمد الشاكرين و الصلوة على خير الذاكرين محمّد و آله الطاهرين الطيّبين اجمعين ‘ ميگويد شيخ الشيوخ قطب العارفين رئيس اهل اليقين زين الملّة و الدين مولانا ابوبكر الشاشى الخ Dated the 19th of Dhû-alḥijjah, A.H. 1087 (A.D. 1677, Feb. 22). No. 3348, olim 19. J. 6, ff. 96, 2 coll., each ll. 11; Nasta’lîḳ; size, 6<sup>5/8</sup> in. by 3<sup>5/8</sup> in. <sup>1</sup>This word is spoiled in the text; there seems to have originally been written لعل, which has later been corrected.
DOI: 10.6084/m9.figshare.20444466
title: Data for "Rothia from the human nose inhibit Moraxella catarrhalis colonization with a secreted peptidoglycan endopeptidase"

description: This repository contains raw and derived data for the manuscript titled "<em>Rothia</em> from the human nose inhibit <em>Moraxella catarrhalis</em> colonization with a secreted peptidoglycan endopeptidase". <br> The raw data includes cell culture assay results, genome sequences, inhibition assay data, and proteomics spectra. <br> The derived data includes antiSMASH output, anvi'o output, BiG-SCAPE output, mothur output, NMDS output. phylogenetic trees, PyParanoid output, and SignalP output. <br> 16S rRNA gene V4 amplicon sequencing data can be found in the Short Read Archive under BioProject accession PRJNA866994. Genome sequences generated from this work are deposited under BioProject accession PRJNA867425. <br>