cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jv9vku
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimelodendron macrocarpum J.J.Sm."
 ]
}

 The dataset includes 34 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074340-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxuefn
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomoides alaica (Knorring) Adylov, Kamelin & Makhm."
 ]
}

 The dataset includes 36 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074341-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6xyn5
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plectranthus antongilicus Hedge"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074342-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpcs7w
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plagiogyria assurgens Christ"
 ]
}

 The dataset includes 92 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074343-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rakpze
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus quintuplinervis M.Schmid"
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074345-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mu48k
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poikilogyne arfakensis Baker fil."
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074344-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wk47sa
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimelodendron zoanthogyne J.J.Sm."
 ]
}

 The dataset includes 77 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074346-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu8r68
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomoides alberti (Regel) Adylov, Kamelin & Makhm."
 ]
}

 The dataset includes 19 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074347-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8bs56y
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plectranthus asymmetricus A.J.Paton"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074348-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25515331
title: GWAS summary statistics for ALPS-index

description: Mean, left, and right ALPS-index
DOI: 10.15468/dl.wnemee
title: Occurrence Download

description: A dataset containing 530 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plagiogyria egenolfioides (Baker) Copel."
 ]
}

 The dataset includes 530 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074349-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9ahfs
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Ambrosia artemisiifolia L."
 ]
}

 The dataset includes 140 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074350-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4fpe6
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus racemosus L.f."
 ]
}

 The dataset includes 145 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074351-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zcwzz2
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poikilogyne bicolor J.F.Maxwell"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074352-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6kcp7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimpinella acronemastrum Farille & Lachard"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074354-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrsghk
title: Occurrence Download

description: A dataset containing 545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((22.30220 41.02850,29.33654 41.02850,29.33654 43.84100,22.30220 43.84100,22.30220 41.02850))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pastor roseus (Linnaeus, 1758)",
 "Year 2014-2024"
 ]
}

 The dataset includes 545 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074353-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ztwzfy
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plectranthus atroviolaceus Hedge"
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074356-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3bp4n
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomoides alpina (Pall.) Adylov, Kamelin & Makhm."
 ]
}

 The dataset includes 130 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074355-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25441203.v1
title: The complete chloroplast genome of <i>Saccharum fulvum</i> (Poaceae)

description: <i>Saccharum</i> species are of great importance as fruit crops due to their economic and food value. <i>S. fulvum</i> is a wild relative of sugarcane that has a wide geographic distribution and is well-adapted to various environmental conditions. It exhibits high resistance to pests, diseases, drought, cold, and degraded soils, making it a valuable resource for sugarcane research. Here, we report the chloroplast genome of <i>S. fulvum</i>. This chloroplast genome was 141,151 bp in length with a GC content of 38.41%. The large single-copy, small single-copy, and inverted repeat regions were 83,030 bp, 12,533 bp, and 22,794 bp in length, respectively. The chloroplast genome contained 111 different genes, including 77 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. Phylogenetic analysis indicated that <i>S. fulvum</i> was closely related to <i>S. narenga</i>. This study not only enriches the genome information of <i>Saccharum</i>, but also will be useful for the evolutionary study of the family Poaceae.
DOI: 10.6084/m9.figshare.25379754
title: The complete chloroplast genome and phylogenetic analysis of <i>Bauhinia glauca</i> subsp<i>. hupehana</i> (Craib) T. C. Chen 1988

description: <i>Bauhinia glauca</i> subsp. <i>hupehana</i> (Craib) T. C. Chen 1988, a member of the <i>Leguminosae</i> family, <i>Cercidoideae</i> subfamily, and <i>Bauhinia</i> genus, has a rich history of traditional usage in Chinese medicine. Renowned for its analgesic properties, it is commonly employed for managing inflammation and pain. This study aimed to sequence the complete chloroplast genome of <i>B. glauca</i> subsp. <i>hupehana</i> using Illumina paired-end sequencing data. The chloroplast genome spans 156,967 bp and consists of four main regions: the large single-copy (LSC) region (89,185 bp), the small single-copy (SSC) region (19,146 bp), and a pair of inverted repeats (IRs) (24,318 bp). The overall GC content of the chloroplast genome is 36.19%, with specific values of 33.99%, 29.79%, and 42.76% for the LSC, SSC, and IR regions, respectively. A total of 128 genes were annotated in the chloroplast genome, including 83 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis revealed that <i>B. glauca</i> subsp. <i>hupehana</i> is closely related to <i>Bauhinia racemose</i>, indicating a sister taxon relationship between the two species. This study significantly contributes to the chloroplast genomic resource for <i>Bauhinia</i>, laying the groundwork for future phylogenetic investigations within the genus.
DOI: 10.6084/m9.figshare.25441203
title: The complete chloroplast genome of <i>Saccharum fulvum</i> (Poaceae)

description: <i>Saccharum</i> species are of great importance as fruit crops due to their economic and food value. <i>S. fulvum</i> is a wild relative of sugarcane that has a wide geographic distribution and is well-adapted to various environmental conditions. It exhibits high resistance to pests, diseases, drought, cold, and degraded soils, making it a valuable resource for sugarcane research. Here, we report the chloroplast genome of <i>S. fulvum</i>. This chloroplast genome was 141,151 bp in length with a GC content of 38.41%. The large single-copy, small single-copy, and inverted repeat regions were 83,030 bp, 12,533 bp, and 22,794 bp in length, respectively. The chloroplast genome contained 111 different genes, including 77 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. Phylogenetic analysis indicated that <i>S. fulvum</i> was closely related to <i>S. narenga</i>. This study not only enriches the genome information of <i>Saccharum</i>, but also will be useful for the evolutionary study of the family Poaceae.
DOI: 10.6084/m9.figshare.25379754.v1
title: The complete chloroplast genome and phylogenetic analysis of <i>Bauhinia glauca</i> subsp<i>. hupehana</i> (Craib) T. C. Chen 1988

description: <i>Bauhinia glauca</i> subsp. <i>hupehana</i> (Craib) T. C. Chen 1988, a member of the <i>Leguminosae</i> family, <i>Cercidoideae</i> subfamily, and <i>Bauhinia</i> genus, has a rich history of traditional usage in Chinese medicine. Renowned for its analgesic properties, it is commonly employed for managing inflammation and pain. This study aimed to sequence the complete chloroplast genome of <i>B. glauca</i> subsp. <i>hupehana</i> using Illumina paired-end sequencing data. The chloroplast genome spans 156,967 bp and consists of four main regions: the large single-copy (LSC) region (89,185 bp), the small single-copy (SSC) region (19,146 bp), and a pair of inverted repeats (IRs) (24,318 bp). The overall GC content of the chloroplast genome is 36.19%, with specific values of 33.99%, 29.79%, and 42.76% for the LSC, SSC, and IR regions, respectively. A total of 128 genes were annotated in the chloroplast genome, including 83 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis revealed that <i>B. glauca</i> subsp. <i>hupehana</i> is closely related to <i>Bauhinia racemose</i>, indicating a sister taxon relationship between the two species. This study significantly contributes to the chloroplast genomic resource for <i>Bauhinia</i>, laying the groundwork for future phylogenetic investigations within the genus.
DOI: 10.6084/m9.figshare.25335614
title: The complete chloroplast genome sequence of <i>Calanthe sieboldii</i> (orchidaceae)

description: <i>Calanthe sieboldii</i> Decne. ex Regel is a terrestrial orchid with high ornamental and commercial value. In the present study, the chloroplast genome of <i>C. sieboldii</i> was characterized using Illumina technology. The chloroplast genome is 158,345 bp in length with a total AT content of 63.28%. There are 127 genes, comprising 37 tRNA genes, 82 protein-coding genes, and 8 rRNA genes. Phylogenetic relationship analysis was performed using common protein-coding genes extracted from 13 chloroplast genomes of Orchidaceae. It was revealed that <i>C. sieboldi</i> was sister to <i>C. hancockii</i> and closely clustered with <i>C. aristulifera</i> and <i>C. henryi</i>. These findings provide valuable genomic resources that are helpful for further phylogenetic and evolutionary studies of <i>Calanthe</i>.
DOI: 10.6084/m9.figshare.25335614.v1
title: The complete chloroplast genome sequence of <i>Calanthe sieboldii</i> (orchidaceae)

description: <i>Calanthe sieboldii</i> Decne. ex Regel is a terrestrial orchid with high ornamental and commercial value. In the present study, the chloroplast genome of <i>C. sieboldii</i> was characterized using Illumina technology. The chloroplast genome is 158,345 bp in length with a total AT content of 63.28%. There are 127 genes, comprising 37 tRNA genes, 82 protein-coding genes, and 8 rRNA genes. Phylogenetic relationship analysis was performed using common protein-coding genes extracted from 13 chloroplast genomes of Orchidaceae. It was revealed that <i>C. sieboldi</i> was sister to <i>C. hancockii</i> and closely clustered with <i>C. aristulifera</i> and <i>C. henryi</i>. These findings provide valuable genomic resources that are helpful for further phylogenetic and evolutionary studies of <i>Calanthe</i>.
DOI: 10.6084/m9.figshare.25379748
title: The complete chloroplast genome of <i>Dianella ensifolia</i> (Asphodelaceae)

description: <i>Dianella ensifolia</i> (L.) Redouté 1802 is a plant known for its significant medicinal values. In this study, we presented its chloroplast genome. The length of the chloroplast genome was found to be 156,571 bp, with a GC content of 37.86%. It consisted of a large single-copy (LSC) of 85,318 bp and a small single-copy (SSC) of 18,307 bp, a pair of inverted repeats (IRs) of 26,473 bp each that separated the LSC and SSC regions. The chloroplast genome of <i>D. ensifolia</i> consisted of 114 unique genes, including 80 protein-coding genes, four rRNA genes, and 30 tRNA genes. Through phylogenetic analysis, we identified a close relationship between <i>D. ensifolia</i> and <i>D. nigra</i>. This newly sequenced chloroplast genome not only enhances our understanding of the genome of <i>Dianella</i>, but also provides valuable insights for the evolutionary study of the family Asphodelaceae.
DOI: 10.6084/m9.figshare.25379748.v1
title: The complete chloroplast genome of <i>Dianella ensifolia</i> (Asphodelaceae)

description: <i>Dianella ensifolia</i> (L.) Redouté 1802 is a plant known for its significant medicinal values. In this study, we presented its chloroplast genome. The length of the chloroplast genome was found to be 156,571 bp, with a GC content of 37.86%. It consisted of a large single-copy (LSC) of 85,318 bp and a small single-copy (SSC) of 18,307 bp, a pair of inverted repeats (IRs) of 26,473 bp each that separated the LSC and SSC regions. The chloroplast genome of <i>D. ensifolia</i> consisted of 114 unique genes, including 80 protein-coding genes, four rRNA genes, and 30 tRNA genes. Through phylogenetic analysis, we identified a close relationship between <i>D. ensifolia</i> and <i>D. nigra</i>. This newly sequenced chloroplast genome not only enhances our understanding of the genome of <i>Dianella</i>, but also provides valuable insights for the evolutionary study of the family Asphodelaceae.
DOI: 10.6084/m9.figshare.25449370
title: Elucidating phylogenetic relationships within the genus <i>Curcuma</i> through the comprehensive analysis of the chloroplast genome of <i>Curcuma viridiflora</i> Roxb. 1810 (Zingiberaceae)

description: <i>Curcuma viridiflora</i> Roxb., a plant species of significant pharmaceutical interest, has been the subject of limited chloroplast genomic research. In this study, we present the sequencing and assembly of the <i>C. viridiflora</i> chloroplast genome, which is characterized by a circular chromosome spanning 162,212 base pairs and a GC content of 36.20%. The genome encodes 87 protein-coding genes (PCGs), 38 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. A phylogenetic analysis was conducted, incorporating eight related species, and based on the complete chloroplast genome and protein-coding DNA sequences of six related taxa within the genus. Outgroup species <i>Zingiber zerumbet</i> and <i>Zingiber officinale</i> were also included in the analysis. The results indicate a close relationship between <i>C. viridiflora</i> and <i>Curcuma phaeocaulis</i>, <i>Curcuma sichuanensis</i>, and <i>Curcuma yunnanensis</i>. This study provides the first chloroplast genome of <i>C. viridiflora</i>, thereby contributing a valuable genomic resource for future research on medicinal plants within the <i>Curcuma</i> genus.
DOI: 10.6084/m9.figshare.25449370.v1
title: Elucidating phylogenetic relationships within the genus <i>Curcuma</i> through the comprehensive analysis of the chloroplast genome of <i>Curcuma viridiflora</i> Roxb. 1810 (Zingiberaceae)

description: <i>Curcuma viridiflora</i> Roxb., a plant species of significant pharmaceutical interest, has been the subject of limited chloroplast genomic research. In this study, we present the sequencing and assembly of the <i>C. viridiflora</i> chloroplast genome, which is characterized by a circular chromosome spanning 162,212 base pairs and a GC content of 36.20%. The genome encodes 87 protein-coding genes (PCGs), 38 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. A phylogenetic analysis was conducted, incorporating eight related species, and based on the complete chloroplast genome and protein-coding DNA sequences of six related taxa within the genus. Outgroup species <i>Zingiber zerumbet</i> and <i>Zingiber officinale</i> were also included in the analysis. The results indicate a close relationship between <i>C. viridiflora</i> and <i>Curcuma phaeocaulis</i>, <i>Curcuma sichuanensis</i>, and <i>Curcuma yunnanensis</i>. This study provides the first chloroplast genome of <i>C. viridiflora</i>, thereby contributing a valuable genomic resource for future research on medicinal plants within the <i>Curcuma</i> genus.
DOI: 10.6084/m9.figshare.25379652
title: The complete plastome genome sequence of <i>Cynanchum otophyllum</i> (Asclepiadaceae), a unique medicinal species in China

description: <i>Cynanchum otophyllum</i> Schneid is an important medicinal plant in China. In this paper, the chloroplast genome of <i>C. otophyllum</i> was sequenced based on high-throughput technology, and the chloroplast genome structure characteristics and phylogenetic relationship of <i>C. otophyllum</i> were analyzed. The results showed the complete plastome genome size of <i>C. otophyllum</i>is 160,874bp, including one small single copy (SSC, 19,851bp) and one large single copy (LSC, 92,009bp) regions isolated by a pair of inverted repeat regions (IRs, 24,507bp). The whole plastome genome including 84 protein encoding genes, 8 rRNA and 37 tRNA. Based on the phylogenetic topologies, <i>C. otophyllum</i> shows close association with additional <i>Gomphocarpus</i> and <i>Asclepias</i> genus. This study contributes to an enhanced understanding of the genetic information of <i>C. otophyllum</i> and provides a theoretical basis for the development of molecular markers and phylogeographic of the species, as well as for constructing the phylogenetic tree of Asclepiadaceae.
DOI: 10.6084/m9.figshare.25379652.v1
title: The complete plastome genome sequence of <i>Cynanchum otophyllum</i> (Asclepiadaceae), a unique medicinal species in China

description: <i>Cynanchum otophyllum</i> Schneid is an important medicinal plant in China. In this paper, the chloroplast genome of <i>C. otophyllum</i> was sequenced based on high-throughput technology, and the chloroplast genome structure characteristics and phylogenetic relationship of <i>C. otophyllum</i> were analyzed. The results showed the complete plastome genome size of <i>C. otophyllum</i>is 160,874bp, including one small single copy (SSC, 19,851bp) and one large single copy (LSC, 92,009bp) regions isolated by a pair of inverted repeat regions (IRs, 24,507bp). The whole plastome genome including 84 protein encoding genes, 8 rRNA and 37 tRNA. Based on the phylogenetic topologies, <i>C. otophyllum</i> shows close association with additional <i>Gomphocarpus</i> and <i>Asclepias</i> genus. This study contributes to an enhanced understanding of the genetic information of <i>C. otophyllum</i> and provides a theoretical basis for the development of molecular markers and phylogeographic of the species, as well as for constructing the phylogenetic tree of Asclepiadaceae.
DOI: 10.6084/m9.figshare.25479421.v1
title: Complete chloroplast genome of <i>sageretia thea</i> (rhamnaceae), an ornamental fruit and medicinal tree

description: <i>Sageretia thea</i> (Osbeck) M.C. Johnst (1968) is an important fruit and medicinal species of Rhamnaceae family. The complete chloroplast genome (cp) of <i>Sageretia</i> genus was sequenced and reported for the first time in this study. The cp genome had a total length of 161,352 bp, consisting of a largesingle-copy (LSC) region of 89,802 bp, a small single-copy (SSC) region of 18,914 bp, and a pair of inverted repeat (IR) regions totaling 26,318 bp. The plastid genome contained 129 genes, including 84 protein-coding genes, 37 tRNA genes, 8 rRNA genes. The overall GC content of the genome was found to be 37.10%. Phylogenetic analysis based on comparison with 27 chloroplast genomes revealed that <i>S. thea</i> is closely related to genera <i>Rhamnus</i> and <i>Berchemia.</i> The findings of this study can provide fundamental insights for the conservation, exploitation, and systematic genomic investigation of Rhamnus plants.