cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8341596
title: Multi-body cryo-em maps and models of a pentameric KCTD5/Cullin3/Gβγ E3 ubiquitin ligase complex

description: Heterotrimeric G proteins can be regulated by post-translational modifications, including ubiquitylation. KCTD5, a pentameric substrate receptor protein consisting of an N-terminal BTB domain and a C-terminal domain (CTD), engages CUL3 to form the central scaffold of a cullin-RING E3 ligase complex (CRL3<sup>KCTD5</sup>) that ubiquitylates Gβγ and reduces Gβγ protein levels in cells. The cryo-EM structure of a 5:5:5 KCTD5/CUL3<sup>NTD</sup>/Gβ<sub>1</sub>γ<sub>2</sub> assembly reveals a highly dynamic complex with rotations of over 60° between the KCTD5<sup>BTB</sup>/CUL3<sup>NTD</sup> and KCTD5<sup>CTD</sup>/Gβγ moieties of the structure. CRL3<sup>KCTD5</sup> engages the E3 ligase ARIH1 to ubiquitylate Gβγ in an E3-E3 super-assembly, and extension of the structure to include full-length CUL3<sup> </sup>with RBX1 and an ARIH1~ubiquitin conjugate reveals that some conformational states position the ARIH1~ubiquitin thioester bond to within 10 Å of lysine-23 of Gβ and likely represent priming complexes. Most previously described CRL/substrate structures have consisted of monovalent complexes and have involved flexible peptide substrates. The structure of the KCTD5/CUL3<sup>NTD</sup> Gβγ complex shows that the oligomerization of a substrate receptor can generate a polyvalent E3 ligase complex and that the internal dynamics of the substrate receptor can position a structured target for ubiquitylation in a CRL3 complex.
description: Relion Multi-body cryo-EM maps and PDB models of states A, B, C, and D of a KCTD5/Cul3(NTD)/Gbeta1gamma2 complex. Each zipped file contains a multimodel cif file consisting of 10 structures and the corresponding 10 maps into which the structures were fitted. Movie file KCTD5_Cul3_Gbg_states_ABCD_with_Multibody.mp4 was generated from the 40 models and is also included with the main paper.
description: {"references": ["Nguyen, DM et al. (2023). Structure and dynamics of a pentameric KCTD5/Cullin3/G\u03b2\u03b3 E3 ubiquitin ligase complex. bioRxiv 10.1101/2023.09.20.558662"]}
DOI: 10.5281/zenodo.7941556
title: Introduction to HPC: molecular dynamics simulations with GROMACS: log files

description: Introduction to HPC: molecular dynamics simulations with GROMACS: log files corresponding to the exercises 1.X 2.X 3.X
DOI: 10.5281/zenodo.7941555
title: Introduction to HPC: molecular dynamics simulations with GROMACS: log files

description: Introduction to HPC: molecular dynamics simulations with GROMACS: log files corresponding to the exercises 1.X 2.X 3.X
DOI: 10.57967/hf/1184
title: stunning
DOI: 10.25345/c54t6fd5g
title: MassIVE MSV000093025 - 231004_Salamander_Microbiome_Extracts_ALL
title: Salamander Skin Microbiome Extract Samples, 35 individual samples
DOI: 10.5281/zenodo.8231155
title: A multi-scale labeled dataset for boulder segmentation and navigation on small bodies

description: The capability to detect boulders on the surface of small bodies is beneficial for vision-based applications such as hazard detection during critical operations, safety quantification, autonomous planning of scientific operations, and autonomous navigation. This task, however, is challenging due to the wide assortment of irregular shapes, the characteristics of the boulders population, and the rapid variability in the illumination conditions. Moreover, the lack of publicly available labeled datasets damps the research about data-driven algorithms. The following dataset has been designed and made publicly available to tackle these challenges. Its purpose is twofold. First, from the lessons learned from previous datasets, to develop a multi-purpose, high-fidelity dataset with boulders scattered across the surface of a small body. Second, to exploit domain randomization, artificial noise addition, scaling, and post-processing, enabling the design of data-driven pipelines. The methodology used to generate the dataset is illustrated in the work "A multi-scale labeled dataset for boulder segmentation and navigation on small bodies" by Mattia Pugliatti and Michele Maestrini, presented at the 74th IAC (International Astronautical Congress), 2024, Baku, Azerbaijan. The dataset contains the image-label pairs of 47502 samples, organized with the following structure: Dataset_PugliattiMaestrini_2023IAC<br> --img<br> --labels<br> --masks The dataset is comprised of 47502 samples. The "img" folder contains the input, 512x 512 grayscale images. The "labels" folder includes the .txt segmentation labels of the 15 most prominent boulders for each image detected with the methodology illustrated in the IAC paper. The "masks" dataset contains the segmentation masks for all image layers, with the values being encoded between 0 and 17 as uint8. The samples are named as XXXXXX_YYY. XXXXXX stands for the image's original ID during rendering. YYY corresponds to the sub-splits of the original image obtained at rendering: 001 - Top-Left crop<br> 002 - Top-Right crop<br> 003 - Bottom-Left crop<br> 004 - Bottom-right crop<br> 005 - Whole, resized
DOI: 10.5281/zenodo.8231154
title: A multi-scale labeled dataset for boulder segmentation and navigation on small bodies

description: The capability to detect boulders on the surface of small bodies is beneficial for vision-based applications such as hazard detection during critical operations, safety quantification, autonomous planning of scientific operations, and autonomous navigation. This task, however, is challenging due to the wide assortment of irregular shapes, the characteristics of the boulders population, and the rapid variability in the illumination conditions. Moreover, the lack of publicly available labeled datasets damps the research about data-driven algorithms. The following dataset has been designed and made publicly available to tackle these challenges. Its purpose is twofold. First, from the lessons learned from previous datasets, to develop a multi-purpose, high-fidelity dataset with boulders scattered across the surface of a small body. Second, to exploit domain randomization, artificial noise addition, scaling, and post-processing, enabling the design of data-driven pipelines. The methodology used to generate the dataset is illustrated in the work "A multi-scale labeled dataset for boulder segmentation and navigation on small bodies" by Mattia Pugliatti and Michele Maestrini, presented at the 74th IAC (International Astronautical Congress), 2024, Baku, Azerbaijan. The dataset contains the image-label pairs of 47502 samples, organized with the following structure: Dataset_PugliattiMaestrini_2023IAC<br> --img<br> --labels<br> --masks The dataset is comprised of 47502 samples. The "img" folder contains the input, 512x 512 grayscale images. The "labels" folder includes the .txt segmentation labels of the 15 most prominent boulders for each image detected with the methodology illustrated in the IAC paper. The "masks" dataset contains the segmentation masks for all image layers, with the values being encoded between 0 and 17 as uint8. The samples are named as XXXXXX_YYY. XXXXXX stands for the image's original ID during rendering. YYY corresponds to the sub-splits of the original image obtained at rendering: 001 - Top-Left crop<br> 002 - Top-Right crop<br> 003 - Bottom-Left crop<br> 004 - Bottom-right crop<br> 005 - Whole, resized The file "10000_ub_2023-01-18 00.09.43.txt" contains all the values of the rendering inputs detailed in the IAC paper.
DOI: 10.5281/zenodo.8406581
title: A multi-scale labeled dataset for boulder segmentation and navigation on small bodies

description: The capability to detect boulders on the surface of small bodies is beneficial for vision-based applications such as hazard detection during critical operations, safety quantification, autonomous planning of scientific operations, and autonomous navigation. This task, however, is challenging due to the wide assortment of irregular shapes, the characteristics of the boulders population, and the rapid variability in the illumination conditions. Moreover, the lack of publicly available labeled datasets damps the research about data-driven algorithms. The following dataset has been designed and made publicly available to tackle these challenges. Its purpose is twofold. First, from the lessons learned from previous datasets, to develop a multi-purpose, high-fidelity dataset with boulders scattered across the surface of a small body. Second, to exploit domain randomization, artificial noise addition, scaling, and post-processing, enabling the design of data-driven pipelines. The methodology used to generate the dataset is illustrated in the work "A multi-scale labeled dataset for boulder segmentation and navigation on small bodies" by Mattia Pugliatti and Michele Maestrini, presented at the 74th IAC (International Astronautical Congress), 2024, Baku, Azerbaijan. The dataset contains the image-label pairs of 47502 samples, organized with the following structure: Dataset_PugliattiMaestrini_2023IAC<br> --img<br> --labels<br> --masks The dataset is comprised of 47502 samples. The "img" folder contains the input, 512x 512 grayscale images. The "labels" folder includes the .txt segmentation labels of the 15 most prominent boulders for each image detected with the methodology illustrated in the IAC paper. The "masks" dataset contains the segmentation masks for all image layers, with the values being encoded between 0 and 17 as uint8. The samples are named as XXXXXX_YYY. XXXXXX stands for the image's original ID during rendering. YYY corresponds to the sub-splits of the original image obtained at rendering: 001 - Top-Left crop<br> 002 - Top-Right crop<br> 003 - Bottom-Left crop<br> 004 - Bottom-right crop<br> 005 - Whole, resized The file "10000_ub_2023-01-18 00.09.43.txt" contains all the values of the rendering inputs detailed in the IAC paper.
DOI: 10.6084/m9.figshare.24243043
title: Replication Package for the IST Journal

description: Contains two Excel files:AtlastiReport: Containing Atlasti Codes and Code-Document analysisStudy-Selection_Data-Extraction_Form: Extracted data from the papers
DOI: 10.6084/m9.figshare.24243043.v1
title: Replication Package for the IST Journal

description: Contains two Excel files:AtlastiReport: Containing Atlasti Codes and Code-Document analysisStudy-Selection_Data-Extraction_Form: Extracted data from the papers
DOI: 10.6084/m9.figshare.24243130
title: Supplementary Material for: Efficacy of a Self-Directed Video-based Caregiver-Implemented Language Programme

description: Introduction. Caregiver-implemented language programmes are effective for alleviating early language difficulties. This study examined the efficacy of a self-directed video-based caregiver-implement language programme in Chinese families. Method. This study consisted of two stages. In Stage 1, 31 caregiver-child dyads (typically developing children) completed the training programme (Group 1) in the form of six video-based training modules. In Stage 2, 28 caregiver-child dyads (children with language difficulties) receiving active speech therapy were randomly assigned to the training (Group 2) and control arms (Group 3). Group 2 received the same training as Group 1 in addition to their regular therapy while Group 3 was kept as status quo. Caregivers completed a quiz on their knowledge of language facilitation techniques (LFTs) and submitted caregiver-child interaction videos at the start and end of the training. Outcome measures included programme completion rate, quiz scores, and use of LFTs and children’s communication skills in the videos. A pre-post design and a between-group designs were adopted in the Stage 1 and 2 studies respectively. Results. A completion rate of about 60% in both stages was noted. Significantly higher post-training knowledge scores were found in Groups 1 and 2. General but non-significant growth in use of parallel talk and gesture, and significant gains in children’s vocalization in the training arm were observed. Conclusion. The self-directed video-based training programme would be useful in imparting information to caregivers. However, the modest improvements in the use of LFTs suggested direct coaching appeared to still play a significant role in enhancing the actual implementation of LFTs. Further investigation on a larger scale is required to evaluate the effectiveness of the training program for promoting the wider use of this mode as a preventive measure.
DOI: 10.6084/m9.figshare.24243130.v1
title: Supplementary Material for: Efficacy of a Self-Directed Video-based Caregiver-Implemented Language Programme

description: Introduction. Caregiver-implemented language programmes are effective for alleviating early language difficulties. This study examined the efficacy of a self-directed video-based caregiver-implement language programme in Chinese families. Method. This study consisted of two stages. In Stage 1, 31 caregiver-child dyads (typically developing children) completed the training programme (Group 1) in the form of six video-based training modules. In Stage 2, 28 caregiver-child dyads (children with language difficulties) receiving active speech therapy were randomly assigned to the training (Group 2) and control arms (Group 3). Group 2 received the same training as Group 1 in addition to their regular therapy while Group 3 was kept as status quo. Caregivers completed a quiz on their knowledge of language facilitation techniques (LFTs) and submitted caregiver-child interaction videos at the start and end of the training. Outcome measures included programme completion rate, quiz scores, and use of LFTs and children’s communication skills in the videos. A pre-post design and a between-group designs were adopted in the Stage 1 and 2 studies respectively. Results. A completion rate of about 60% in both stages was noted. Significantly higher post-training knowledge scores were found in Groups 1 and 2. General but non-significant growth in use of parallel talk and gesture, and significant gains in children’s vocalization in the training arm were observed. Conclusion. The self-directed video-based training programme would be useful in imparting information to caregivers. However, the modest improvements in the use of LFTs suggested direct coaching appeared to still play a significant role in enhancing the actual implementation of LFTs. Further investigation on a larger scale is required to evaluate the effectiveness of the training program for promoting the wider use of this mode as a preventive measure.
DOI: 10.5281/zenodo.8406074
title: The interplay between abiotic and biotic factors on dispersal decisions: evidence and implications for metacommunities

description: Suitable conditions for species to survive and reproduce constitute their ecological niche, which is built by abiotic conditions and interactions with conspecifics and heterospecifics. Organisms should ideally assess and use information about all these environmental dimensions to adjust their dispersal decisions depending on their own internal conditions. Dispersal plasticity is often considered through its dependence to abiotic conditions or conspecifics density, and to a lesser extent with the effects of interactions with heterospecifics, potentially leading to misinterpretation of dispersal drivers. Here, we first review the evidence for effects of, and the potential interplays between abiotic factors, biotic interactions with conspecifics and heterospecifics, and phenotype on dispersal decisions. We then present an experimental test of these potential interplays, testing the effects of density and interactions with conspecifics and heterospecifics on temperature-dependent dispersal in microcosms of &lt;i&gt;Tetrahymena &lt;/i&gt;ciliates. We found significant differences in dispersal rates depending on temperature, density, and presence of another strain or species. However, the presence and density of conspecifics and heterospecifics had no effects on the thermal-dependency of dispersal. We discuss the causes and consequences of the (lack of) interplay between the different environmental dimensions and the phenotype for metacommunity assembly and dynamics.
DOI: 10.5281/zenodo.8406073
title: The interplay between abiotic and biotic factors on dispersal decisions: evidence and implications for metacommunities

description: Suitable conditions for species to survive and reproduce constitute their ecological niche, which is built by abiotic conditions and interactions with conspecifics and heterospecifics. Organisms should ideally assess and use information about all these environmental dimensions to adjust their dispersal decisions depending on their own internal conditions. Dispersal plasticity is often considered through its dependence to abiotic conditions or conspecifics density, and to a lesser extent with the effects of interactions with heterospecifics, potentially leading to misinterpretation of dispersal drivers. Here, we first review the evidence for effects of, and the potential interplays between abiotic factors, biotic interactions with conspecifics and heterospecifics, and phenotype on dispersal decisions. We then present an experimental test of these potential interplays, testing the effects of density and interactions with conspecifics and heterospecifics on temperature-dependent dispersal in microcosms of &lt;i&gt;Tetrahymena &lt;/i&gt;ciliates. We found significant differences in dispersal rates depending on temperature, density, and presence of another strain or species. However, the presence and density of conspecifics and heterospecifics had no effects on the thermal-dependency of dispersal. We discuss the causes and consequences of the (lack of) interplay between the different environmental dimensions and the phenotype for metacommunity assembly and dynamics.
DOI: 10.5281/zenodo.7313201
title: heidENC: Heidelberg Encyclopedia Archive

description: The repository contains the binary files of <em>The Heidelberg Encyclopedia Database </em>heidENC, by Rudolf G. Wagner(†) . It is accompanied by an annotated bibliography and a separate repository for text files. The data has been slightly restructured and cleaned up to prepare for this upload, but all contents reflect the state of the last edit on May 14, 2019.
description: Dataset compiled and uploaded 2022-11-11 by Duncan Paterson, Heidelberg Research Architecture, ORCID 0000-0001-8958-6463
description: {"references": ["Wagner, R.G. (2014). Chinese Encyclopaedias of New Global Knowledge (1870\u20131930): Changing Ways of Thought. In: Dole\u017eelov\u00e1-Velingerov\u00e1, M., Wagner, R. (eds) Chinese Encyclopaedias of New Global Knowledge (1870-1930). Transcultural Research \u2013 Heidelberg Studies on Asia and Europe in a Global Context. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-35916-3_1"]}
DOI: 10.5281/zenodo.7313202
title: heidENC: Heidelberg Encyclopedia Archive

description: The repository contains the binary files of <em>The Heidelberg Encyclopedia Database </em>heidENC, by Rudolf G. Wagner(†) . It is accompanied by an annotated bibliography and a separate repository for text files. The data has been slightly restructured and cleaned up to prepare for this upload, but all contents reflect the state of the last edit on May 14, 2019.
description: Dataset compiled and uploaded 2022-11-11 by Duncan Paterson, Heidelberg Research Architecture, ORCID 0000-0001-8958-6463
description: {"references": ["Wagner, R.G. (2014). Chinese Encyclopaedias of New Global Knowledge (1870\u20131930): Changing Ways of Thought. In: Dole\u017eelov\u00e1-Velingerov\u00e1, M., Wagner, R. (eds) Chinese Encyclopaedias of New Global Knowledge (1870-1930). Transcultural Research \u2013 Heidelberg Studies on Asia and Europe in a Global Context. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-35916-3_1"]}
DOI: 10.6073/pasta/9c7789b75d66690862c89c1f2ff6cbda
title: Jornada Basin LTER: Wireless meteorological station at NPP C-CALI site: 30-minute summary data: 2013 - ongoing

description: 30-minute summary data at NPP C-CALI met station. Average air temperature, relative humidity, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP C-CALI site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.24243196
title: Prague_input_data.xlsx

description: Data for analyses.
DOI: 10.6084/m9.figshare.24243196.v1
title: Prague_input_data.xlsx

description: Data for analyses.
DOI: 10.25612/837.1lkqq7vpk84j
title: FEMA Community Disaster Resilience Zones in Harris County, TX

description: Extract and summary of FEMA Community Disaster Resilience Zones, which identify census tracts that are most at risk from the effects of climate change, for Harris County.
DOI: 10.5281/zenodo.8214599
title: 3D particle-in-cell simulations of negative and positive streamers in C4F7N-CO2 mixtures

description: The dataset contains the data for obtaining the results presented in the article "3D particle-in-cell simulations of negative and positive streamers in C4F7N-CO2 mixtures". It includes (1) the source code; (2) transport data files as input; (3) configuration files for simulation execution; and (4) output log files (which contain information about the physics and numerical properties of the simulations) and summary files (which contain transport coefficients).
DOI: 10.5281/zenodo.8214598
title: 3D particle-in-cell simulations of negative and positive streamers in C4F7N-CO2 mixtures

description: The dataset contains the data for obtaining the results presented in the article "3D particle-in-cell simulations of negative and positive streamers in C4F7N-CO2 mixtures". It includes (1) the PIC/MCC source code; (2) transport data files as input; (3) configuration files for simulation execution; and (4) output log files (which contain information about the physics and numerical properties of the simulations).
DOI: 10.5281/zenodo.8407079
title: 3D particle-in-cell simulations of negative and positive streamers in C4F7N-CO2 mixtures

description: The dataset contains the data for obtaining the results presented in the article "3D particle-in-cell simulations of negative and positive streamers in C4F7N-CO2 mixtures". It includes (1) the PIC/MCC source code; (2) transport data files as input; (3) configuration files for simulation execution; and (4) output log files (which contain information about the physics and numerical properties of the simulations).
DOI: 10.21223/lct5p7/ccqvmb
title: 06_Datadictionary.txt

description: :unav
DOI: 10.21223/lct5p7/r4kztq
title: 05_Material_list.txt

description: :unav
DOI: 10.21223/lct5p7/dydchf
title: 01_Fieldbook_PTYL200711_LAVICT_Gon_Stn_Field.txt

description: :unav
DOI: 10.21223/lct5p7/dsbvxw
title: 02_Fieldbook_TMIN200711_LAVICT_Gon_Stn_Field.txt

description: :unav
DOI: 10.21223/lct5p7/cbovct
title: TCAR200711_LAVICT_Gon_Stn_Field.xls

description: :unav
DOI: 10.21223/lct5p7/yibtk8
title: PTYL200711_LAVICT_Gon_Stn_Field.xls

description: :unav
DOI: 10.21223/lct5p7/firbir
title: TMIN200711_LAVICT_Gon_Stn_Field.xls

description: :unav
DOI: 10.21223/lct5p7/jdx0hh
title: 04_Fieldbook_TCAR200711_LAVICT_Gon_Stn_Field.txt

description: :unav
DOI: 10.21223/lct5p7/d2bvpv
title: 03_Fieldbook_TVIT200711_LAVICT_Gon_Stn_Field.txt

description: :unav
DOI: 10.21223/lct5p7/50r46g
title: TVIT200711_LAVICT_Gon_Stn_Field.xls

description: :unav