cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26054098.v1
title: source_data_tbi223.csv

description: TBI-223, a novel oxazolidinone for tuberculosis, is designed to provide improved efficacy and safety compared to linezolid in combination with bedaquiline and pretomanid (BPaL). We aim to optimize the dosing of TBI-223 within the BPaL regimen for enhanced therapeutic outcomes. TBI-223 is investigated in preclinical monotherapy, multidrug therapy, and lesion penetration experiments to describe its efficacy and safety versus linezolid. A translational platform incorporating linezolid and BPaL data from preclinical experiments and 4 clinical trials (NCT00396084, NCT02333799, NCT03086486, NCT00816426) is developed, enabling validation of the framework. TBI-223 preclinical and Phase 1 data (NCT03758612) are applied to the translational framework to predict clinical outcomes and optimize TBI-223 dosing in combination with bedaquiline and pretomanid. Results indicate that daily doses of 1200-2400 mg TBI-223 may achieve efficacy comparable to the BPaL regimen, with &gt;90% of patients predicted to reach culture conversion by two months.
DOI: 10.6084/m9.figshare.5254579
title: The spawning and early life-history of a New Zealand endemic amphidromous eleotrid, bluegill bully (<i>Gobiomorphus hubbsi</i>)

description: The larval stage of fishes is critical in determining their dispersal, survival and recruitment, but little is known of the larval behaviours and tolerances of amphidromous fishes, particularly in New Zealand. We report the results of a series of observational and experimental studies on bluegill bully (<i>Gobiomorphus hubbsi</i>), including spawning sites and behaviours, larval characteristics at hatch, phototactic responses of larvae, and larval survival at different salinity levels. Spawning primarily occurred in the lower reaches of the river, and larvae from different nests exhibited marked differences in, and trade-offs between, larval characteristics at hatch, potentially affecting larval success. Larvae were positively phototactic to intense light, an unexpected result based on diel drift patterns and international research. Finally, larvae exhibited markedly higher survival rates when reared at intermediate salinities compared to freshwater or seawater, suggesting estuaries may play an important role as nursery grounds for bluegill bully and other amphidromous fish.
DOI: 10.6084/m9.figshare.12749324.v1
title: Final Data - Matrix of kinase/substrate edge weights by predictor

description: This will unzip the Final Data folder for KinPred v1.0, the final matrix-based files, by prediction algorith type, of kinase-substrate relationships and their edge weights.<br>In each folder for a prediction algorithm is a final csv data file. This matrix has substrates by row and kinase names by columns. The substrate and kinase names are based on the controlled ontology set in KinPred. The matrix entry (i,j) is the edge weight predicted for substrate i and kinase j.
DOI: 10.6084/m9.figshare.19160828.v1
title: Procedure and time periods of the eight sessions in this study

description: This excel file included experimental procedure and time periods of the eight sessions in study.
DOI: 10.6084/m9.figshare.21820089.v1
title: CGU (Responses).xlsx

description: Responses to questionnaire on the current landscape on career guidance opportunities available, use of career guidance services offered, resources available and need for resources for career guidance among postgraduate medical and dental trainees in Sri Lanka
DOI: 10.6084/m9.figshare.28677761.v2
title: Datas - Effects of prior familiarisation and MFAA in P. vannamei shrimp

description: Feeding attractants are often used in aquaculture to enhance feed intake and promote growth. To evaluate their effectiveness, feeding tests must rely on robust protocols that minimise interindividual variability. Prior familiarisation involves repeated exposures to the testing tank to eventually habituate animals to it and redirect their focus toward the tested feed. This study assessed the effects of prior familiarisation on stress responses and feeding behaviour of the Pacific white shrimp <i>Penaeus vannamei</i>, and evaluated its relevance in evaluating the attractivity and palatability of a mix of free amino acids (MFAA). In Experiment 1, we assessed the effects of prior familiarisation (1 h/day for three consecutive days) and the presence of feed during testing. Familiarisation increased feed consumption but had no effect on stress responses. In Experiment 2, we assessed the effects of familiarisation and the presence of several feed types during the test (No Feed, uncoated Blank Diet, Blank Diet coated with 0.5 or 1 % of MFAA). Familiarisation increased feed consumption but did not improve shrimp’s ability to discriminate feeds. These results question the relevance of this time- and resource-consuming procedure in feeding tests. Additionally, shrimp consumed more MFAA-coated feed, regardless of familiarisation, suggesting that palatable additives can mitigate beneficial effects of familiarisation. Behavioural responses were highly variable across both experiments and replicates, highlighting the need for more standardised and refined protocols. Given the economic importance of <i>P. vannamei</i>, refining testing procedures is essential to improve the assessment of additive efficiency.
DOI: 10.17632/9bm255ynwn
title: Mechanical characteristics of open-cell AlSi10Mg materials and open-cell AlSi10Mg-SiC composites with varying pore sizes and strain rates

description: This data file contains the raw and analyzed data of the mechanical properties of open-cell AlSi10Mg and AlSi10Mg-SiC materials with different pore sizes and strain rates. The materials were subjected to quasi-static compression loading up to 60% strain at strain rates of 0.01 and 0.001 s-1. The data file consists of three folders: Raw data, Analyzed data, and Python code.

The Raw data folder contains TXT files with the information and numerical data of each tested specimen. The information includes the specimen designation, pre-load, test speed, type of compression modulus determination, and material. The numerical data includes the compressive strain, standard force, time, and work. The TXT files are named according to the specimen designation.

The Analyzed data folder contains XLSX files with the stress-strain curves, energy absorption, and energy absorption efficiency characteristics of each specimen. The XLSX files also contain the calculated values of the plateau stress, plateau end stress, and plateau end strain for each specimen. The XLSX files are named according to the material type and strain rate testing condition.

The Python code folder contains two subfolders: Input data and Output data. The Input data subfolder contains the XLSX file with the average stress-strain curves for all tested specimens. The Output data subfolder contains the PNG files with the plots of the stress-strain curves, energy absorption, and energy absorption efficiency for different material types and pore sizes. The Python code folder also contains the Python script that uses the matplotlib library to generate the plots from the input data.

The specimen labels are based on the material type, pore size, and strain rate. For example, C 0.01 means open-cell AlSi10Mg material with pore size of 800-1000 μm and strain rate of 0.01 s-1. The other labels follow the same pattern: E for open-cell AlSi10Mg material with pore size of 1000-1200 μm, SC for open-cell AlSi10Mg-SiC composite with pore size of 800-1000 μm, and SE for open-cell AlSi10Mg-SiC composite with pore size of 1000-1200 μm.
DOI: 10.17632/f72czwv7rn
title: Data for: The leachability of a ternary CaO-Al2O3-SiO2 slag produced from smelting- reduction of low-grade bauxite for alumina recovery

description: The data consists of input and output selected phases of calcium-aluminate slags that are leached in Na2CO3 solution for equilibrium calculation using HSC thermochemistry software.
DOI: 10.17632/xw8svk5k3d
title: Replication package for "Common and Country-Specific Uncertainty Shocks in Europe: Why Their Nature Matters for Policy"

description: This replication package contains the data and the code for the decomposition of the Economic Policy Uncertainty index (EPU) on the common and country-specific components using the dynamic connectedness (EPU_disaggregation), and for estimation of the effects of shocks into both components on economic activity, inflation and monetary policy setting (PVAR). The estimates of shocks are conducted using panel VAR identified with zero and sign restrictions. We show that only synchronized uncertainty shocks significantly affect Europe’s macroeconomy, while purely national shocks have limited impact.
DOI: 10.17632/zdnj8zsrf9
title: A cross-platform, high-performance SPH toolkit for image-based flow simulations on the pore scale of porous media

description: Efficient numerical simulations of fluid flow on the pore scale allow for the numerical estimation of effective material properties of porous media like effective permeability or tortuosity, among others. In contrast to time-consuming and often expensive laboratory tests, pore scale-resolved numerical simulations further enable the computational quantification of anisotropy of inherent material properties and the estimation of representative sample domains. Numerically calculated quantities are valuable in several fields, such as carbon dioxide sequestration, geothermal energy production and groundwater contamination remediation. Our specific pore scale-resolved simulation method directly based on images obtained from Micro X-Ray Computed Tomography (μXRCT) is based on the weakly compressible Smoothed Particle Hydrodynamics (SPH) approach. SPH is a meshless Lagrangian method, highly suitable for modeling complex geometries and flow at moderate Reynolds numbers. Low Reynolds number flow, also denoted as creeping flow, is a typical scenario present in the above mentioned applications. However, SPH is computationally demanding, especially in simulations of large domains. To overcome these difficulties, we have designed a specific SPH module for the highly optimized HOOMD-blue Molecular Dynamics software. Our implementation supports single-phase flow, and targets both CPU and GPU clusters. Due to the high computational demands, scalability is essential to make the software practically usable, and our tests indicate that our implementation can scale almost ideally. We study a wide variety of test cases, which are not only representative for XRCT-based geometries, but for pore scale-resolved flow simulations in general. Additionally, we present a large-scale simulation investigating an unconventional high porous volcanic rock sample (Reticulite).
DOI: 10.4121/uuid:9f8fc941-3807-4986-af7d-058c78748ab3
title: Methodology for the analysis of propagation of PQ disturbances through the power networks

description: MIGRATE Project, WorkPackage 5: Deliverable 5.3 (D5.3) Propagation of PQ disturbances through the power networks
DOI: 10.6084/m9.figshare.21591618.v2
title: PPI prediction from sequence, gold standard dataset

description: Gold Standard Dataset for sequence-based PPI prediction: Big dataset: 163,192 training points (Intra-1), 59,260 validation points (Intra-0), 52,048 test points (Intra-2)) No direct data leakage: proteins from training are not contained in validation or test, proteins from validation are not in training or test, proteins from test are not in validation or training Minimized sequence similarity between training, validation, test because whole human proteome was split with KaHIP such that sequence similarities are minimized w.r.t. length-normalized bitscores Redundancy-reduction with CD-HIT: inside of the datasets, no proteins with &gt;40% pairwise sequence similarity
DOI: 10.6084/m9.figshare.26106262.v1
title: Flow Cytometry data

description: Flow cytometry data (.fcs files) collected from an Attune NxT flow cytometer. Two strains of Atlantic salmon yolk sack fry (aquaculture and wild) were raised under germ-free conditions and, one week after hatching, exposed to water with either r- or K-selected microbial communities. Samples were collected to quantify the bacterial density in the added water and fish rearing flasks.
DOI: 10.6084/m9.figshare.5096455.v2
title: MUSEC_Briefings_Archive

description: Archive of the MUSEC Briefings on educational and clinical interventions for children with developmental disorders. Debunking pseudoscience, and pointing the way to evidence-based interventions.<br>
DOI: 10.6084/m9.figshare.7326326.v1
title: Database.zip

description: 建筑业的碳排放量
DOI: 10.17632/bt5jwn5p3f
title: How Important Are Trend Shocks? The Role of the Debt Elasticity of Interest Rate

description: We study how financial frictions affect the importance of trend productivity shocks for macroeconomic fluctuations. Using long-run data from 17 small open economies (SOEs), we compare two variants of a workhorse SOE real business cycle model featuring a debt-elastic interest rate (DEIR), a measure of financial frictions. The first variant estimates the DEIR parameter, while the second fixes it to 0.001, effectively abstracting from financial frictions. On average, ignoring financial frictions doubles the contribution of trend shocks to output fluctuations. This suggests that a proper assessment of the quantitative effects of trend shocks requires reasonable DEIR values.
DOI: 10.6084/m9.figshare.12098463.v1
title: Bajczyk Fig. 5 and S3

description: raw data collectionraw data
DOI: 10.6084/m9.figshare.12609206.v1
title: Confirmed COVID-19 cases and deaths (8 countries)

description: Confirmed COVID-19 cases and deaths for the 8 countries in our analysis as obtained by the ECDC.<br>
DOI: 10.6084/m9.figshare.19682193.v2
title: D2D-China

description: The D2D-China dataset documents the detailed schedules of large-scale mass transit in China from 2017 to 2020 and provides longitudinal shortest travel times between transport stops and prefecture-level cities.
DOI: 10.6084/m9.figshare.24939480.v1
title: XRD Milled and Quenched samples. EDS spectrum.

description: XRD of mechanical alloying and quenched samples. Energy-Dispersive X-ray Spectroscopy (EDS) spectra from various spots.
DOI: 10.6084/m9.figshare.27070576.v2
title: Study on the SEI in Migraine

description: Data and Code for the Study on the SEI in Migraine
DOI: 10.17632/5gp976kchf
title: Factors associated with maternal survival in a low-resource setting

description: Maternal mortality is a global concern and a consensus has been reached that the health of mothers and children is an important indicator of national health and the socio-economic development of countries. In 2015 the reduction of maternal mortality was adopted in the global and national initiatives for improving maternal health under Sustainable Development Goals(SDG). Despite the commitment set out in SDGs maternal mortality remains high, Zimbabwe is among the 40 countries in the world with high maternal mortality rate. There was need to analyse the causes for such high maternal mortalityhence the need for this research.The objective of the study was to determine the factors associated with maternal survival of pregnant mothers at Mpilo Central Hospital. The results of the study could help reduce maternal mortality. Data were entered into Stata12.1 statistical package. Univariate statistics were performed and presented as frequencies and percentages for categorical variables. We used Variance Inﬂated Factor (VIF) to test for multi-collinearity for all the candidate explanatory variables. Binary logistic regression was used to calculate the probability of maternal death given different variables. A p value &lt; 0.05 was taken as statistically significant. 95% Conﬁdence Interval (CI) was used. The Cox proportional hazard model was used on the factors which were found to be statistically significant in maternal mortality to analyze if they have an effect on the survival time of patients. The p-value of our model was &lt;0.0001 which identified that the model fits the data and can be used to predict survival. Kaplain Meir survival curves were used to compare survival of patients with respect to their booking status. Using binary logistic regression, the following were statistically significant associated with maternal death: age (OR 3.434, 95% CI 1.508-7.819, p=0.003), education level (OR 0.114, 95% CI 0.018-0.724, p=0.021), booking status (OR 29.547, 95% CI 8.016-111.290, p=0.001), ANC visits (OR 2.549, 95% CI 1.732-3.750, p = 0:001), PPH (0R 3.302, 95% CI 1.291-8.447, p=0.013), PIH(OR 0.010, 95% CI 0.001-0.112, p=0.001), APH (OR 3.941, 95% CI 1.371-11.329, p=0.011), sepsis (OR 5.358, 95% CI 1.792-16.022, p=0.003), retroviral infection (OR 8.466, 95% CI 1.921-37.320, p=0.005), anaemia (OR 5.647, 95% CI 1.491-21.383, p=0.011), other mode of deliveries which includes vacuum and forceps (OR 21.751, 95% CI 2.305-205.276, p=0.007) and miscarriages (OR 6.995, 95% CI 1.813-26.987, p=0.005). Using Cox regression, the following were found to be statistically significant; patients who did not book their pregnancies (HR 5.196, 95% CI 2.342-11.527, p=0.001), PPH (HR 1.790, 95% CI 1.097-2.919, p=0.020), PIH (HR 0.071, 95% CI 0.010-0.515, p=0.009), APH (HR 2.153, 95% CI 1.345-3.447, p=0.001) and ANC visits (HR 1.379, 95% CI 1.039-1.739, p=0.006)
DOI: 10.4121/uuid:968098ce-afe1-4b21-a509-dedaf9bf4bd5
title: Pan-European data sets of river flood probability of occurrence under present and future climate

description: GIS-compatible files containing data related to the probablity of river floods occurring in Europe under present and future climate. Includes gridded (GeoTIFF) datasets of river flood extents (in two variants, with or without flood protection) and water depths. Additionally includes extreme river discharge estimates in ESRI Shapefile format. Based upon CLMcom-CCLM4-8-17-EC-EARTH regional climate simulation (EURO-CORDEX)
DOI: 10.6084/m9.figshare.20049722.v1
title: Automated identification of chicken distress vocalisations using deep learning models

description: Abstract The annual global production of chickens exceeds 25 billion birds, which are often housed in very large groups, numbering thousands. Distress calling triggered by various sources of stress has been suggested as an “iceberg indicator” of chicken welfare. However, to date, the identification of distress calls largely relies on manual annotation, which is very labour-intensive and time-consuming. Thus, a novel convolutional neural network-based model, light-VGG11, was developed to automatically identify chicken distress calls using recordings (3,363 distress calls and 1,973 natural barn sounds) collected on an intensive farm. The light-VGG11 was modified from VGG11 with significantly fewer parameters (9.3 million <em>vs</em> 128 million) and 55.88% faster detection speed while displaying comparable performance, <em>i.e.</em>, precision (94.58%), recall (94.89%), F1-score (94.73%), and accuracy (95.07%), therefore more useful for model deployment in practice. To additionally improve light-VGG11’s performance, we investigated the impacts of different data augmentation techniques (<em>i.e.</em>, time masking, frequency masking, mixed spectrograms of the same class, and Gaussian noise) and found that they could improve distress calls detection by up to 1.52%. Furthermore, a distress call detection demonstration on continuous audios exhibited our research’s potential for developing technologies to monitor the output of distress calls in large, commercial chicken flocks. Methods Recordings were collected in production facilities owned by Lengfeng Poultry Ltd., in Guangxi province, People’s Republic of China, between November and December 2017 and in November 2018. Chickens (mix of Chinese “spotted” and “three-yellow” breeds) were kept in stacked cages (three cages per stack, with 13-20 individuals per cage), with approximately 2,000 to 2,500 birds per house. The microphone was positioned approximately two meters up from the floor, mounted on the top cage of a stack in the middle of the barn<strong>. </strong>This placement was chosen to ensure that the recording devices did not interfere with the farm staff cleaning and maintaining the barns. All recordings were sampled at 22.05 kHz with a 16-bit bit-depth throughout the natural lifecycle (0 – 35 days) of chickens using a portable recorder (Zoom H4n Pro, Zoom Corporation, Tokyo, Japan). These recordings were collected from two different chicken flocks at the same farm, one of which was used as the development dataset to learn the model, and the other was used as a continuous testing dataset to verify the model’s generalisation capability.
DOI: 10.6084/m9.figshare.25137320.v1
title: Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor-immune hubs

description: A comprehensive toolbox for multi-modal analysis and integration of ST datasets dubbed Spatial Transcriptomic Analysis using Reference-Free deep generative modeling with archetYpes and Shared Histology (Starfysh)
DOI: 10.6084/m9.figshare.5965498.v1
title: Movies of PECAN

description: <b>Movie 1. </b>The lysosome movement in Hela cell. <b>Movie 2. </b>The lysosome movement in Hela cell after nocodazole stimulation. <b>Movie 3. </b>The simulated ant dynamics. <b>Movie 4. </b>The PECAN analysis of ant dynamics. <b>Movie 5. </b>The lysosome movement in neural cell. <b>Movie 6. </b>The oscillation movement of lysosome dynamics.
DOI: 10.6084/m9.figshare.6989516.v1
title: Supplementary Material for: Association between Allergic Diseases and Irritable Bowel Syndrome: A Retrospective Study

description: <b><i>Background:</i></b> The relationship between allergic disease and irritable bowel syndrome (IBS) is poorly understood. We aimed to investigate the potential association as well as the underlying immunological mechanisms. <b><i>Methods:</i></b> A retrospective case-control study of 108 atopic patients from among outpatients in an allergy clinic (allergic rhinitis [AR], <i>n</i> = 49; chronic urticaria [CU], <i>n</i> = 59) and 74 controls from among ward companions was conducted from November 2016 to March 2017. The detection rates and related gastrointestinal (GI) symptoms of IBS, as well as immunological indices, were calculated. <b><i>Results:</i></b> CU patients had a trend of increase in the detection of IBS compared to controls (OR = 4.846; 95% CI 0.967–24.279, <i>p</i> = 0.077). Loose stools (OR = 2.406; 95% CI 1.075–5.386, <i>p</i> &lt; 0.05) and viscous stools (OR = 2.665; 95% CI 1.250–5.682, <i>p</i> &lt; 0.05) were more common in CU patients. Atopic patients positive for serum total immunoglobulin E (IgE) (OR = 3.379; 95% CI 1.088–10.498, <i>p</i> &lt; 0.05) or house dust mite (HDM)-specific IgE (OR = 3.640; 95% CI 1.228–10.790, <i>p</i> &lt; 0.05) were more likely to have abdominal bloating. Besides, a positive association between levels of total IgE and severity of abdominal bloating was observed (<i>p</i> &lt; 0.05). An HDM-specific IgE-positive reaction was independently associated with abdominal bloating in atopic patients (<i>p</i> &lt; 0.05). <b><i>Conclusions:</i></b> Allergic disease has a clear clinical association with IBS with more frequent and severe symptoms of IBS. CU patients have a tendency to suffer from IBS, usually with diarrhea. Serum total IgE and HDM-specific IgE are positively correlated with GI symptoms in atopic patients.
DOI: 10.15468/dl.9djwq6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagamichthys schnakenbecki (Krefft, 1953)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((17.9648 19.8496,8.9648 19.8496,8.9648 10.8496,17.9648 10.8496,17.9648 19.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013232-250525065834625/datasets/export for details.