cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14526437
title: Additional file 1 of Chimeric antigen receptor natural killer (CAR-NK) cell design and engineering for cancer therapy

description: Additional file 1. Table S1: Cell line-derived CAR-NK cells (extended version)
DOI: 10.6084/m9.figshare.14526440
title: Additional file 2 of Chimeric antigen receptor natural killer (CAR-NK) cell design and engineering for cancer therapy

description: Additional file 2. Table S2: Primary cell-derived CAR-NK cells (extended version)
DOI: 10.6084/m9.figshare.14526440.v1
title: Additional file 2 of Chimeric antigen receptor natural killer (CAR-NK) cell design and engineering for cancer therapy

description: Additional file 2. Table S2: Primary cell-derived CAR-NK cells (extended version)
DOI: 10.6084/m9.figshare.14526437.v1
title: Additional file 1 of Chimeric antigen receptor natural killer (CAR-NK) cell design and engineering for cancer therapy

description: Additional file 1. Table S1: Cell line-derived CAR-NK cells (extended version)
DOI: 10.6084/m9.figshare.14526314
title: Additional file 2 of Identification of homozygous haplotypes carrying putative recessive lethal mutations that compromise fertility traits in French Lacaune dairy sheep

description: Additional file 2: Table S1. Clustering HHD in LDHH regions. Table S1 shows all significant haplotypes of 20 markers (i.e., 266 HHD with frequency &gt; 1%, P-value
DOI: 10.6084/m9.figshare.14526314.v1
title: Additional file 2 of Identification of homozygous haplotypes carrying putative recessive lethal mutations that compromise fertility traits in French Lacaune dairy sheep

description: Additional file 2: Table S1. Clustering HHD in LDHH regions. Table S1 shows all significant haplotypes of 20 markers (i.e., 266 HHD with frequency &gt; 1%, P-value
DOI: 10.6084/m9.figshare.14526317
title: Additional file 3 of Identification of homozygous haplotypes carrying putative recessive lethal mutations that compromise fertility traits in French Lacaune dairy sheep

description: Additional file 3: Table S3. Positional candidate genes within LDHH regions. Table S3 summarizes all the protein coding genes that are located within the 11 LDHH regions extended by 1 Mb on each side. Genomic coordinates refer to the sheep reference genome v3.1. When available, gene information and association with autosomal recessive disorders in mammals are reported for each protein coding gene based on the following databases: NCBI Entrez: https://www.ncbi.nlm.nih.gov/Web/Search/entrezfs.html ; MGI: www.informatics.jax.org ; IMPC: https://www.mousephenotype.org ); OMIM: Online Mendelian Inheritance in Man ( https://omim.org ) and OMIA: Online Mendelian Inheritance in Animal ( https://omia.org ).
DOI: 10.6084/m9.figshare.14526317.v1
title: Additional file 3 of Identification of homozygous haplotypes carrying putative recessive lethal mutations that compromise fertility traits in French Lacaune dairy sheep

description: Additional file 3: Table S3. Positional candidate genes within LDHH regions. Table S3 summarizes all the protein coding genes that are located within the 11 LDHH regions extended by 1 Mb on each side. Genomic coordinates refer to the sheep reference genome v3.1. When available, gene information and association with autosomal recessive disorders in mammals are reported for each protein coding gene based on the following databases: NCBI Entrez: https://www.ncbi.nlm.nih.gov/Web/Search/entrezfs.html ; MGI: www.informatics.jax.org ; IMPC: https://www.mousephenotype.org ); OMIM: Online Mendelian Inheritance in Man ( https://omim.org ) and OMIA: Online Mendelian Inheritance in Animal ( https://omia.org ).
DOI: 10.6084/m9.figshare.14525982
title: Additional file 2 of Clinical and therapeutic features and prognostic factors of metastatic colorectal cancer over age 80: a retrospective study

description: Additional file 2: Table S1: Summary of the chemotherapy regimens. Chemotherapy regimens received by patients in the first-, second-, and third-line treatments separated according to those aged
DOI: 10.6084/m9.figshare.14525982.v1
title: Additional file 2 of Clinical and therapeutic features and prognostic factors of metastatic colorectal cancer over age 80: a retrospective study

description: Additional file 2: Table S1: Summary of the chemotherapy regimens. Chemotherapy regimens received by patients in the first-, second-, and third-line treatments separated according to those aged
DOI: 10.6084/m9.figshare.14526245
title: Additional file 2 of JEDi: java essential dynamics inspector — a molecular trajectory analysis toolkit

description: Additional file 2. Supplemental Images: ZIP Archive of MPEG Movies
DOI: 10.6084/m9.figshare.14526245.v1
title: Additional file 2 of JEDi: java essential dynamics inspector — a molecular trajectory analysis toolkit

description: Additional file 2. Supplemental Images: ZIP Archive of MPEG Movies
DOI: 10.6084/m9.figshare.14526101
title: Additional file 10 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 10: Supplementary Table 9. Results of functional enrichment analysis, performed by ToppFun from the ToppGene Suite Gene Ontology tool, of over-expressed genes (with expression ratios ≥1.30) in the trisomy 21 (T21) vs normal control (N) differential transcriptome map. The GO codes are ordered for the number of the column "hit count in query list".
DOI: 10.6084/m9.figshare.14526101.v1
title: Additional file 10 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 10: Supplementary Table 9. Results of functional enrichment analysis, performed by ToppFun from the ToppGene Suite Gene Ontology tool, of over-expressed genes (with expression ratios ≥1.30) in the trisomy 21 (T21) vs normal control (N) differential transcriptome map. The GO codes are ordered for the number of the column "hit count in query list".
DOI: 10.6084/m9.figshare.14526104
title: Additional file 11 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 11: Supplementary Table 10. Results of functional enrichment analysis, performed by ToppFun from the ToppGene Suite Gene Ontology tool, of under-expressed genes (with expression ratios ≤0.76) in the trisomy 21 (T21) vs normal control (N) differential transcriptome map. The GO categories are ordered by the number in the column "hit count in query list".
DOI: 10.6084/m9.figshare.14526104.v1
title: Additional file 11 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 11: Supplementary Table 10. Results of functional enrichment analysis, performed by ToppFun from the ToppGene Suite Gene Ontology tool, of under-expressed genes (with expression ratios ≤0.76) in the trisomy 21 (T21) vs normal control (N) differential transcriptome map. The GO categories are ordered by the number in the column "hit count in query list".
DOI: 10.6084/m9.figshare.14526110
title: Additional file 13 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 13: Supplementary Table 12. Differential expression of pool A (trisomy 21 white blood cells) versus pool B (normal control white blood cells) from data available in Powers et al. (2019). Loci were sorted in descending order of expression ratio (Ratio A/B). N/A: not available. SD: standard deviation.
DOI: 10.6084/m9.figshare.14526113
title: Additional file 14 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 14: Supplementary Table 13. DS clinical data collected at the moment of enrollment in the study. RNA samples for RNA-seq experiments were collected from subjects A1; A2; A3; A4. RNA samples for Real-time RT-PCR experiments were collected from subjects A5; A6; A7; A8; A9; A10.
DOI: 10.6084/m9.figshare.14526113.v1
title: Additional file 14 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 14: Supplementary Table 13. DS clinical data collected at the moment of enrollment in the study. RNA samples for RNA-seq experiments were collected from subjects A1; A2; A3; A4. RNA samples for Real-time RT-PCR experiments were collected from subjects A5; A6; A7; A8; A9; A10.
DOI: 10.6084/m9.figshare.14526110.v1
title: Additional file 13 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 13: Supplementary Table 12. Differential expression of pool A (trisomy 21 white blood cells) versus pool B (normal control white blood cells) from data available in Powers et al. (2019). Loci were sorted in descending order of expression ratio (Ratio A/B). N/A: not available. SD: standard deviation.
DOI: 10.6084/m9.figshare.14526134.v1
title: Additional file 7 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 7: Supplementary Table 6. Primer pairs used for TRAM map experimental validation by Real-Time RT-PCR.
DOI: 10.6084/m9.figshare.14526134
title: Additional file 7 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 7: Supplementary Table 6. Primer pairs used for TRAM map experimental validation by Real-Time RT-PCR.
DOI: 10.6084/m9.figshare.14526137
title: Additional file 8 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 8: Supplementary Table 7. A) Samples selected for RNA sequencing. B) Samples selected for Real-Time RT-PCR analyses on a larger cohort of samples to validate some Hsa21 genes over-expressed with the RNA-Seq. DS: Down syndrome; n: normal control.
DOI: 10.6084/m9.figshare.14526137.v1
title: Additional file 8 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 8: Supplementary Table 7. A) Samples selected for RNA sequencing. B) Samples selected for Real-Time RT-PCR analyses on a larger cohort of samples to validate some Hsa21 genes over-expressed with the RNA-Seq. DS: Down syndrome; n: normal control.
DOI: 10.6084/m9.figshare.14526140
title: Additional file 9 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 9: Supplementary Table 8. Real-Time RT-PCR experiments performed on 6 subjects with Down syndrome (A5; A6; A7; A8; A9; A10) and 6 normal controls (B5; B6; B7; B8; B9; B10). The tables on the left report the mean of cycles (Cq mean) for the five genes selected and for the reference gene (GAPDH), the difference of Cq means among the gene and GAPDH gene (∆Cq) and finally the relative expression values of the gene vs GAPDH gene obtained through the 2-∆Ct method (2-∆Ct) for each subject. The presence of strong outliers in the expression values of each gene is reported in red in tables on the left. The following is reported in the tables on the right: mean gene expression values (Mean); standard deviation (S.D.); and ratio between DS and N mean gene expression values (Ratio DS/N) after the exclusion of strong outliers.
DOI: 10.6084/m9.figshare.14526140.v1
title: Additional file 9 of The transcriptome profile of human trisomy 21 blood cells

description: Additional file 9: Supplementary Table 8. Real-Time RT-PCR experiments performed on 6 subjects with Down syndrome (A5; A6; A7; A8; A9; A10) and 6 normal controls (B5; B6; B7; B8; B9; B10). The tables on the left report the mean of cycles (Cq mean) for the five genes selected and for the reference gene (GAPDH), the difference of Cq means among the gene and GAPDH gene (∆Cq) and finally the relative expression values of the gene vs GAPDH gene obtained through the 2-∆Ct method (2-∆Ct) for each subject. The presence of strong outliers in the expression values of each gene is reported in red in tables on the left. The following is reported in the tables on the right: mean gene expression values (Mean); standard deviation (S.D.); and ratio between DS and N mean gene expression values (Ratio DS/N) after the exclusion of strong outliers.
DOI: 10.6084/m9.figshare.15026698
title: Additional file 5 of Multi-omics approach highlights differences between RLP classes in Arabidopsis thaliana

description: Additional file 5:
DOI: 10.6084/m9.figshare.15026698.v1
title: Additional file 5 of Multi-omics approach highlights differences between RLP classes in Arabidopsis thaliana

description: Additional file 5:
DOI: 10.6084/m9.figshare.14525945.v1
title: Additional file 2 of The predictive value of creatinine clearance for mortality in patients undergoing revascularization

description: Additional file 2: Figure S2. Distribution of CKD stages determined by eGFR according to the five different formulas. A - Among patients who underwent CABG. B - Among patients who underwent PCI. CKD = Chronic kidney disease; eGFR = estimated glomerular filtration rate; CABG = coronary artery bypass grafting; PCI = percutaneous coronary intervention; CKD-EPI = Chronic Kidney disease Epidemiology Collaboration; MDRD = Modification of Diet in Renal Disease; IB = Inulin clearance–Based equation; CG = Cockcroft–Gault
DOI: 10.6084/m9.figshare.14525945
title: Additional file 2 of The predictive value of creatinine clearance for mortality in patients undergoing revascularization

description: Additional file 2: Figure S2. Distribution of CKD stages determined by eGFR according to the five different formulas. A - Among patients who underwent CABG. B - Among patients who underwent PCI. CKD = Chronic kidney disease; eGFR = estimated glomerular filtration rate; CABG = coronary artery bypass grafting; PCI = percutaneous coronary intervention; CKD-EPI = Chronic Kidney disease Epidemiology Collaboration; MDRD = Modification of Diet in Renal Disease; IB = Inulin clearance–Based equation; CG = Cockcroft–Gault
DOI: 10.6084/m9.figshare.14526255
title: Additional file 2 of Whole genome sequencing in oncology: using scenario drafting to explore future developments

description: Additional file 2. R code used in the analysis.
DOI: 10.6084/m9.figshare.14526255.v1
title: Additional file 2 of Whole genome sequencing in oncology: using scenario drafting to explore future developments

description: Additional file 2. R code used in the analysis.
DOI: 10.6084/m9.figshare.14526506
title: Additional file 4 of Molecular surveillance of anti-malarial resistance pfcrt, pfmdr1, and pfk13 polymorphisms in African Plasmodium falciparum imported parasites to Wuhan, China

description: Additional file 4: Table S3. Haplotypes distribution of pfcrt and pfmdr1 from different areas.
DOI: 10.6084/m9.figshare.14526500
title: Additional file 2 of Molecular surveillance of anti-malarial resistance pfcrt, pfmdr1, and pfk13 polymorphisms in African Plasmodium falciparum imported parasites to Wuhan, China

description: Additional file 2: Table S1. Reaction system and conditions for amplification of targeted fragments of pfmdr1 and pfcrt genes.
DOI: 10.6084/m9.figshare.14526500.v1
title: Additional file 2 of Molecular surveillance of anti-malarial resistance pfcrt, pfmdr1, and pfk13 polymorphisms in African Plasmodium falciparum imported parasites to Wuhan, China

description: Additional file 2: Table S1. Reaction system and conditions for amplification of targeted fragments of pfmdr1 and pfcrt genes.
DOI: 10.6084/m9.figshare.14526503.v1
title: Additional file 3 of Molecular surveillance of anti-malarial resistance pfcrt, pfmdr1, and pfk13 polymorphisms in African Plasmodium falciparum imported parasites to Wuhan, China

description: Additional file 3: Table S2. Haplotypes distribution of pfcrt and pfmdr1 during 2017-2019.
DOI: 10.6084/m9.figshare.14526503
title: Additional file 3 of Molecular surveillance of anti-malarial resistance pfcrt, pfmdr1, and pfk13 polymorphisms in African Plasmodium falciparum imported parasites to Wuhan, China

description: Additional file 3: Table S2. Haplotypes distribution of pfcrt and pfmdr1 during 2017-2019.
DOI: 10.6084/m9.figshare.14526506.v1
title: Additional file 4 of Molecular surveillance of anti-malarial resistance pfcrt, pfmdr1, and pfk13 polymorphisms in African Plasmodium falciparum imported parasites to Wuhan, China

description: Additional file 4: Table S3. Haplotypes distribution of pfcrt and pfmdr1 from different areas.
DOI: 10.6084/m9.figshare.14526509
title: Additional file 5 of Molecular surveillance of anti-malarial resistance pfcrt, pfmdr1, and pfk13 polymorphisms in African Plasmodium falciparum imported parasites to Wuhan, China

description: Additional file 5: Table S4. Overall frequency of combined haplotypes in pfcrt and pfmdr1.
DOI: 10.6084/m9.figshare.14526509.v1
title: Additional file 5 of Molecular surveillance of anti-malarial resistance pfcrt, pfmdr1, and pfk13 polymorphisms in African Plasmodium falciparum imported parasites to Wuhan, China

description: Additional file 5: Table S4. Overall frequency of combined haplotypes in pfcrt and pfmdr1.
DOI: 10.6084/m9.figshare.14525940
title: Additional file 1 of Untrained birds’ ability to recognise predators with changed body size and colouration in a field experiment

description: Additional file 1. Material Table S1 containing analysed data from the first experiment.
DOI: 10.6084/m9.figshare.14525940.v1
title: Additional file 1 of Untrained birds’ ability to recognise predators with changed body size and colouration in a field experiment

description: Additional file 1. Material Table S1 containing analysed data from the first experiment.
DOI: 10.6084/m9.figshare.14526575
title: Additional file 2 of Untrained birds’ ability to recognise predators with changed body size and colouration in a field experiment

description: Additional file 2. Material Table S2 containing analysed data from the second experiment.
DOI: 10.6084/m9.figshare.14526575.v1
title: Additional file 2 of Untrained birds’ ability to recognise predators with changed body size and colouration in a field experiment

description: Additional file 2. Material Table S2 containing analysed data from the second experiment.
DOI: 10.6084/m9.figshare.14526444
title: Additional file 5 of Zymomonas diversity and potential for biofuel production

description: Additional file 5: Table S6. Merged orthologue and annotation data.
DOI: 10.6084/m9.figshare.14526444.v1
title: Additional file 5 of Zymomonas diversity and potential for biofuel production

description: Additional file 5: Table S6. Merged orthologue and annotation data.
DOI: 10.6084/m9.figshare.14526072
title: Additional file 1 of RNA sequencing-based analysis of the magnum tissues revealed the novel genes and biological pathways involved in the egg-white formation in the laying hen

description: Additional file 1: Table S1. Filtration and alignment summary of RNA-Seq Reads from magnum in laying and non-laying hens. Table S2. Summary of magnum RNA-Seq data mapping to the chicken genome (Galgal5.0). Table S3. Differentially expressed genes at FDR_BH 3 in the magnum of laying and non-laying hens. Table S4. Correlation between RNA-seq and qPCR data of relative gene expression in magnum of laying and non-laying hens. Table S5. List of primers for the candidate genes used in qPCR assay. Primers for the candidate genes were designed using Primer Blast tool of NCBI with filters of amplicon size between 100 and 250 bp, primers must span an exon-exon junction, melting point between 55 and 60 °C with other filters set at default.
DOI: 10.6084/m9.figshare.14526072.v1
title: Additional file 1 of RNA sequencing-based analysis of the magnum tissues revealed the novel genes and biological pathways involved in the egg-white formation in the laying hen

description: Additional file 1: Table S1. Filtration and alignment summary of RNA-Seq Reads from magnum in laying and non-laying hens. Table S2. Summary of magnum RNA-Seq data mapping to the chicken genome (Galgal5.0). Table S3. Differentially expressed genes at FDR_BH 3 in the magnum of laying and non-laying hens. Table S4. Correlation between RNA-seq and qPCR data of relative gene expression in magnum of laying and non-laying hens. Table S5. List of primers for the candidate genes used in qPCR assay. Primers for the candidate genes were designed using Primer Blast tool of NCBI with filters of amplicon size between 100 and 250 bp, primers must span an exon-exon junction, melting point between 55 and 60 °C with other filters set at default.
DOI: 10.6084/m9.figshare.14526521.v1
title: Additional file 2 of Targeting the PI3K and MAPK pathways to improve response to HER2-targeted therapies in HER2-positive gastric cancer

description: Additional file 2: Table S3. Raw data from RPPA experiments.
DOI: 10.6084/m9.figshare.14526521
title: Additional file 2 of Targeting the PI3K and MAPK pathways to improve response to HER2-targeted therapies in HER2-positive gastric cancer

description: Additional file 2: Table S3. Raw data from RPPA experiments.
DOI: 10.5063/zs2twd
title: Reduction of growth stresses in logs of Hieronyma alchorneoides Allemão from fast-growth plantations using steaming and heating: effects on the quality of lumber (2021)

description: Growth stresses effects were measured on crooking due to sawing, color and wards, split and check in logs of Hieronyma alchorneoides Allemão with two treatment: steaming and heating. Steam treatment reduced from 1500  (micro-deformations) to 1000 microdeformation after the treatment. The steam resented more favorable values in the parameters evaluated than the heating treatment. Crooking due to sawing decreased significantly and the quality of the lumber, the magnitude and incidence of the defects in treated logs decreased.
DOI: 10.34810/data72/783
title: 02CO_1.MR.0004.0116.2013.03.10.17.33.16.406250.165478658.IMA
DOI: 10.34810/data72/784
title: 02CO_1.MR.0004.0069.2013.03.10.17.33.16.406250.165477812.IMA
DOI: 10.5281/zenodo.5118030
title: RABIES_extras

description: These are installed along with RABIES (https://github.com/CoBrALab/RABIES) as part of the defaults options.
DOI: 10.5281/zenodo.5118041
title: GAP_workshop_3_materials

description: This archive contains the data needed to run the analysis for the GAP_workshop 3 in the ASBS 2021 conference workshop series. It contains the raw data needed to run all analyses and pre-prepared output files for anyone to follow the workshop in case their analysis runs into problems or takes too long.
DOI: 10.5281/zenodo.5058720
title: GAP_workshop_3_materials

description: This archive contains the data needed to run the analysis for the GAP_workshop 3 in the ASBS 2021 conference workshop series. It contains the raw data needed to run all analyses and pre-prepared output files for anyone to follow the workshop in case their analysis runs into problems or takes too long.
DOI: 10.34810/data72/785
title: 02CO_1.MR.0004.0191.2013.03.10.17.33.16.406250.165480015.IMA
DOI: 10.6084/m9.figshare.15026853
title: Supplementary Table 2: Archaean taxa in all samples

description: Archaean taxa in all samples. The number indicates the number of read(s) for each taxon.
DOI: 10.6084/m9.figshare.15026853.v1
title: Supplementary Table 2: Archaean taxa in all samples

description: Archaean taxa in all samples. The number indicates the number of read(s) for each taxon.
DOI: 10.6084/m9.figshare.15025734
title: Supplemental Table 1: Bacterial taxa shared among all three cellulose cultures

description: Bacterial taxa shared among all three cellulose cultures. The numbers indicate the number of reads found in each sample.
DOI: 10.6084/m9.figshare.15025734.v2
title: Supplemental Table 1: Bacterial taxa shared among all three cellulose cultures

description: Bacterial taxa shared among all three cellulose cultures. The numbers indicate the number of reads found in each sample.
DOI: 10.6084/m9.figshare.15025734.v1
title: Supplemental Table 1 Bacterial taxa shared among all three cellulose cultures

description: Bacterial taxa shared among all three cellulose cultures. The numbers indicate the number of reads found in each sample.
DOI: 10.34810/data72/786
title: 02CO_1.MR.0004.0108.2013.03.10.17.33.16.406250.165478514.IMA
DOI: 10.34810/data72/787
title: 02CO_1.MR.0004.0007.2013.03.10.17.33.16.406250.165476696.IMA
DOI: 10.6084/m9.figshare.14034143
title: Data (table)

description: Data (table) related to beam angle optimisation research
DOI: 10.34810/data72/788
title: 02CO_1.MR.0004.0194.2013.03.10.17.33.16.406250.165480069.IMA