cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dmcyxr
title: Occurrence Download

description: A dataset containing 16556 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ploceus melanocephalus (Linnaeus, 1758)"
 ]
}

 The dataset includes 16556 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035208-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcyky7
title: Occurrence Download

description: A dataset containing 54959 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trifolium montanum L."
 ]
}

 The dataset includes 54959 records from 290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058976-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erm8s5
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001557-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.buc72n
title: Occurrence Download

description: A dataset containing 19390 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chromolaena odorata (L.) R.M.King & H.Rob."
 ]
}

 The dataset includes 19390 records from 366 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219568-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i2azsj
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lucilia porphyrina (Walker, 1856)"
 ]
}

 The dataset includes 166 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005315-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yr75kc
title: Occurrence Download

description: A dataset containing 147093 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atriplex prostrata DC."
 ]
}

 The dataset includes 147093 records from 538 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228979-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6t59v
title: Occurrence Download

description: A dataset containing 15954 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Petromyzon marinus Linnaeus, 1758"
 ]
}

 The dataset includes 15954 records from 237 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001570-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.afr42k
title: Occurrence Download

description: A dataset containing 358 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Daphnopsis selerorum Gilg"
 ]
}

 The dataset includes 358 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153264-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.invn5f
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Petrosaviales",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022525-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f447ag
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Allenrolfea occidentalis (S.Watson) Kuntze"
 ]
}

 The dataset's 2 records were derived from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324377-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7hqbce
title: Occurrence Download

description: A dataset containing 14581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphorbia falcata L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14581 records from 288 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083248-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0tyuaf
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is China",
 "Country is Viet Nam",
 "Country is Myanmar",
 "Country is Lao People’s Democratic Republic"
 ]
 },
 "TaxonKey is Actinidia chrysantha C.F.Liang"
 ]
}

 The dataset includes 48 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011609-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6qtw5
title: Occurrence Download

description: A dataset containing 71204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphorbia exigua L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 71204 records from 687 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083242-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92xtwf
title: Occurrence Download

description: A dataset listing the 587 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biodiversidad asociada al Área de perforación exploratoria - VIM46"
 ]
}

 The dataset's 587 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000539-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tczx2a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ovis aries Linnaeus, 1758",
 "Country is French Southern Territories",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000548-250121130708018/datasets/export for details.
DOI: 10.15468/dl.vs58ju
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Onychorhynchus coronatus fraterculus Bangs, 1902"
 ]
}

 The dataset includes 202 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000549-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60520/ieda/113654
title: Matrix glass composition of tephra samples from El Hierro's Tanganasoga volcano and western rift (Canary Islands)

description: This dataset reports the major and volatile (S, Cl) element compositions of matrix glasses from tephra samples from the Tanganasoga volcano and the western rift on the island of El Hierro, in the Canaries. Data were acquired by electron probe microanalysis at McGill University. Results show a wide range of compositions from basanite (for scoria lapilli) to trachyte (pumice lapilli and ash).
DOI: 10.15468/dl.e9df8q
title: Occurrence Download

description: A dataset containing 3531 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Caracterización de flora y fauna en Área de perforación exploratoria VIM3, departamento de Bolívar, Colombia"
 ]
}

 The dataset includes 3531 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000550-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2jtpm
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Pogonopus exsertus (Oerst.) Oerst.",
 "Year 1970-2025"
 ]
}

 The dataset includes 325 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000552-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14610135
title: Raw data for: Thermoacoustic range verification during conventional dose rate delivery by a synchrocyclotron

description: Data (raw thermoacoustic data, as well as filtered pulses sorted by spot) for this paper are attached, and the paper abstract follows: 

Background: Minimization of range uncertainties is critical for precise and effective proton therapy. Thermoacoustic range verification is a promising non-invasive technique for pinpointing the Bragg peak location in proton therapy.

Purpose: Verification of a prototype device for thermoacoustic range verification with minimal disruption to a clinical workflow for proton therapy delivered by a synchrocyclotron.

Materials/Methods: 5-8 pC/pulse were delivered to a gelatin-ultrasound quality-assurance phantom by a Mevion Hyperscan S250i system in 200-300 pulses/spot. Spots were laterally separated by 25 mm; energy layers were separated in depth by 10 MeV. Thermoacoustic and nuclear emissions were captured by a wireless thermoacoustic range verifier, with radiation detector on board. Dose maps for individual beamlets were exported from RayStation 12A and used to compute initial values for finite element acoustic simulation, assuming Gaussian beam current with σ = 0.95 μs.

The plan was re-delivered 9 times with varying thicknesses of solid-water equivalent phantom (Sun Nuclear) placed on the snout. Range shifts and total dose were recomputed and loaded into RayStation for comparison to the original plan.

To assess applicability to clinical plans, analysis was performed by averaging N=16 pulses for which radiation detector signal exceeded 50% of its maximum. Finite element results were bandpass filtered, and time shifted to best match control measurements obtained without solid water on the snout. 

Results: Using only N=16 thermoacoustic pulses yielded best- and worst-case errors of  and , averaged over all spots. Averaged over spots in a layer, best- and worst-case errors were 0.0 1.3 mm and -1.3 1.6 mm. 

Conclusions: A wireless range verification research device that can be setup in less than 10 minutes provided millimeter range accuracy in an ultrasound quality assurance phantom.
DOI: 10.5281/zenodo.14610136
title: Raw data for: Thermoacoustic range verification during conventional dose rate delivery by a synchrocyclotron

description: Data (raw thermoacoustic data, as well as filtered pulses sorted by spot) for this paper are attached, and the paper abstract follows: 

Background: Minimization of range uncertainties is critical for precise and effective proton therapy. Thermoacoustic range verification is a promising non-invasive technique for pinpointing the Bragg peak location in proton therapy.

Purpose: Verification of a prototype device for thermoacoustic range verification with minimal disruption to a clinical workflow for proton therapy delivered by a synchrocyclotron.

Materials/Methods: 5-8 pC/pulse were delivered to a gelatin-ultrasound quality-assurance phantom by a Mevion Hyperscan S250i system in 200-300 pulses/spot. Spots were laterally separated by 25 mm; energy layers were separated in depth by 10 MeV. Thermoacoustic and nuclear emissions were captured by a wireless thermoacoustic range verifier, with radiation detector on board. Dose maps for individual beamlets were exported from RayStation 12A and used to compute initial values for finite element acoustic simulation, assuming Gaussian beam current with σ = 0.95 μs.

The plan was re-delivered 9 times with varying thicknesses of solid-water equivalent phantom (Sun Nuclear) placed on the snout. Range shifts and total dose were recomputed and loaded into RayStation for comparison to the original plan.

To assess applicability to clinical plans, analysis was performed by averaging N=16 pulses for which radiation detector signal exceeded 50% of its maximum. Finite element results were bandpass filtered, and time shifted to best match control measurements obtained without solid water on the snout. 

Results: Using only N=16 thermoacoustic pulses yielded best- and worst-case errors of  and , averaged over all spots. Averaged over spots in a layer, best- and worst-case errors were 0.0 1.3 mm and -1.3 1.6 mm. 

Conclusions: A wireless range verification research device that can be setup in less than 10 minutes provided millimeter range accuracy in an ultrasound quality assurance phantom.
DOI: 10.6084/m9.figshare.26511229
title: Dataset for Paper 'An Empirical Study of Kubernetes Configuration Bugs'

description: Dataset and source code used for the paper titled 'Configuration Defects in Kubernetes'
DOI: 10.15468/dl.fk6x8r
title: Occurrence Download

description: A dataset containing 570 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eleutherodactylus leprus (Cope, 1879)"
 ]
}

 The dataset includes 570 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000556-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14713666
title: Cardiopulmonary bypass with deep hypothermic circulatory arrest results in organ-specific transcriptomic responses in pediatric swine - Data

description: The data in this Zenodo entry corresponds to the data and results associated with the manuscript titled Cardiopulmonary bypass with deep hypothermic circulatory arrest results in organ-specific transcriptomic responses in pediatric swine and the accompying code base . The zipped folder contains the following file structure roughly broken down into two main parts; Data (files needed to run the code) and Results (files generated by the code)



Data 



mapped_reads : genrated by nf-core pipeline that is used in the analyses

networks : data used to generate network clusters

orthologs: data used to convert swine genes to human genes

Sample info + gender with heart.csv : sample sheet describing labels of the samples 



Results



Make_DEG_Lists : results generated for the entire gene list (includes results for only looking at all up- or all down-regulated genes, which aren't included in the main manuscript)

Make_Cluster : results of the network clustering analysis (includes results for only looking at all up- or all down-regulated genes, which aren't included in the main manuscript)

nfcore_count_tables : count tables generated by the rnaseq pipeline run using nf-core




Note: the names of the groups in these files are slightly different than in the manuscript



Controlnodrug = Control

CPBnodrug = CPB/DHCA

CPBLind = CPB/DHCA + Lin (Linrodostat analyses ended up not included in the published version of the manuscript)


This study was funded by the National Institutes of Health/NHLBI R01HL156936
DOI: 10.5281/zenodo.14713665
title: Cardiopulmonary bypass with deep hypothermic circulatory arrest results in organ-specific transcriptomic responses in pediatric swine - Data

description: The data in this Zenodo entry corresponds to the data and results associated with the manuscript titled Cardiopulmonary bypass with deep hypothermic circulatory arrest results in organ-specific transcriptomic responses in pediatric swine and the accompying code base . The zipped folder contains the following file structure roughly broken down into two main parts; Data (files needed to run the code) and Results (files generated by the code)



Data 



mapped_reads : genrated by nf-core pipeline that is used in the analyses

networks : data used to generate network clusters

orthologs: data used to convert swine genes to human genes

Sample info + gender with heart.csv : sample sheet describing labels of the samples 



Results



Make_DEG_Lists : results generated for the entire gene list (includes results for only looking at all up- or all down-regulated genes, which aren't included in the main manuscript)

Make_Cluster : results of the network clustering analysis (includes results for only looking at all up- or all down-regulated genes, which aren't included in the main manuscript)

nfcore_count_tables : count tables generated by the rnaseq pipeline run using nf-core




Note: the names of the groups in these files are slightly different than in the manuscript



Controlnodrug = Control

CPBnodrug = CPB/DHCA

CPBLind = CPB/DHCA + Lin (Linrodostat analyses ended up not included in the published version of the manuscript)


This study was funded by the National Institutes of Health/NHLBI R01HL156936
DOI: 10.15468/dl.u3rsj3
title: Occurrence Download

description: A dataset containing 522 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pogonopus exsertus (Oerst.) Oerst."
 ]
}

 The dataset includes 522 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000558-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akj7vq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((180 -44.3,173 -44.3,173 -47.5,170 -47.5,157 -47.5,157 -45.9,150 -45.9,150 -47.5,143 -47.5,143 -45.8,140 -45.8,140 -44.5,137 -44.5,137 -43,135 -43,135 -41.7,131 -41.7,131 -40.1,115 -40.1,92 -40.1,92 -41.4,78 -41.4,78 -42.3,69 -42.3,69 -43.3,47 -43.3,47 -41.7,30 -41.7,12 -41.7,12 -40.3,10 -40.3,10 -38.3,-5 -38.3,-5 -38.9,-9 -38.9,-9 -40.2,-13 -40.2,-13 -41.4,-21 -41.4,-21 -42.5,-39 -42.5,-39 -40.7,-49 -40.7,-49 -48.6,-54 -48.6,-54 -55.7,-62.7972582608082 -55.7,-64 -55.7,-64 -57.8,-71 -57.8,-71 -58.9,-80 -58.9,-80 -40,-125 -40,-167 -40,-167 -42.6,-171 -42.6,-171 -44.3,-180 -44.3,-180 -90, 0 -90,180 -90,180 -44.3))",
 "KingdomKey is Poaceae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonomicStatus is one of (Accepted, Synonym, Homotypic Synonym, Heterotypic Synonym)",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample, Living Specimen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000559-250121130708018/datasets/export for details.
DOI: 10.15468/dl.4z2qj7
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vanilla planifolia Andrews",
 "Year 1970-2025"
 ]
}

 The dataset includes 178 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000560-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h43xea
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((180 -44.3,173 -44.3,173 -47.5,170 -47.5,157 -47.5,157 -45.9,150 -45.9,150 -47.5,143 -47.5,143 -45.8,140 -45.8,140 -44.5,137 -44.5,137 -43,135 -43,135 -41.7,131 -41.7,131 -40.1,115 -40.1,92 -40.1,92 -41.4,78 -41.4,78 -42.3,69 -42.3,69 -43.3,47 -43.3,47 -41.7,30 -41.7,12 -41.7,12 -40.3,10 -40.3,10 -38.3,-5 -38.3,-5 -38.9,-9 -38.9,-9 -40.2,-13 -40.2,-13 -41.4,-21 -41.4,-21 -42.5,-39 -42.5,-39 -40.7,-49 -40.7,-49 -48.6,-54 -48.6,-54 -55.7,-62.7972582608082 -55.7,-64 -55.7,-64 -57.8,-71 -57.8,-71 -58.9,-80 -58.9,-80 -40,-125 -40,-167 -40,-167 -42.6,-171 -42.6,-171 -44.3,-180 -44.3,-180 -90, 0 -90,180 -90,180 -44.3))",
 "KingdomKey is Deschampsia P.Beauv.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonomicStatus is one of (Accepted, Synonym, Homotypic Synonym, Heterotypic Synonym)",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample, Living Specimen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000562-250121130708018/datasets/export for details.
DOI: 10.15468/dl.x4rkcq
title: Occurrence Download

description: A dataset containing 414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vanilla planifolia Andrews",
 "Year 1970-2025"
 ]
}

 The dataset includes 414 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000561-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jsuzft
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((180 -44.3,173 -44.3,173 -47.5,170 -47.5,157 -47.5,157 -45.9,150 -45.9,150 -47.5,143 -47.5,143 -45.8,140 -45.8,140 -44.5,137 -44.5,137 -43,135 -43,135 -41.7,131 -41.7,131 -40.1,115 -40.1,92 -40.1,92 -41.4,78 -41.4,78 -42.3,69 -42.3,69 -43.3,47 -43.3,47 -41.7,30 -41.7,12 -41.7,12 -40.3,10 -40.3,10 -38.3,-5 -38.3,-5 -38.9,-9 -38.9,-9 -40.2,-13 -40.2,-13 -41.4,-21 -41.4,-21 -42.5,-39 -42.5,-39 -40.7,-49 -40.7,-49 -48.6,-54 -48.6,-54 -55.7,-62.7972582608082 -55.7,-64 -55.7,-64 -57.8,-71 -57.8,-71 -58.9,-80 -58.9,-80 -40,-125 -40,-167 -40,-167 -42.6,-171 -42.6,-171 -44.3,-180 -44.3,-180 -90, 0 -90,180 -90,180 -44.3))",
 "TaxonKey is Deschampsia P.Beauv.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonomicStatus is one of (Accepted, Synonym, Homotypic Synonym, Heterotypic Synonym)",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample, Living Specimen)"
 ]
}

 The dataset includes 169 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000563-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.