cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/pvjuca
title: Pternopetalum shunhuangensis (Apiaceae), a new species from Hunan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhou, Wei, Feng, Zi-Lin, Tang, Long-Ping, Deng, Du, Wu, Bao-cheng, Wu, Lei (2025): Pternopetalum shunhuangensis (Apiaceae), a new species from Hunan, China. PhytoKeys 253: 261-270, DOI: 10.3897/phytokeys.253.142516AbstractBased on field investigations, morphological and molecular systematic studies, a new species, Pternopetalum shunhuangensis (Apiaceae) from Hunan Province, China is described. Diagnostic morphological characters, full description and a detailed illustration are provided. The differences between P. shunhuangensis and morphologically similar species P. tanakae are presented and discussed. Since no population assessment of this species in its whole distribution area is made, it is best to assign a conservation status of ‘ Data Deficient’ (DD) for this species.
DOI: 10.15468/fa4zcy
title: A new freshwater amphipod (Amphipoda, Gammaridae), Gammarus tumaf sp. nov. from the Goekgoel Cave, Tuerkiye

description: This dataset contains the digitized treatments in Plazi based on the original journal article Oezbek, Murat, Aksu, Ismail, Baytasoglu, Hazel (2023): A new freshwater amphipod (Amphipoda, Gammaridae), Gammarus tumaf sp. nov. from the Goekgoel Cave, Tuerkiye. Zoosystematics and Evolution 99 (1): 15-27, DOI: http://dx.doi.org/10.3897/zse.99.89957, URL: http://dx.doi.org/10.3897/zse.99.89957
DOI: 10.15468/yxpxrf
title: Die Myriopodenfauna von Albanien und Jugoslavien

description: This dataset contains the digitized treatments in Plazi based on the original journal article C. Attems (1929): Die Myriopodenfauna von Albanien und Jugoslavien. Zoologische Jahrbücher, Abteilung für Systematik 56: 296-356, URL: http://un.abailab.le
DOI: 10.15468/dl.a2u2sh
title: Occurrence Download

description: A dataset containing 409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is South America",
 "TaxonKey is Solenopsis invicta",
 "Year 2000-2025"
 ]
}

 The dataset includes 409 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064493-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/k8hm7p
title: Chromis abadhah (Teleostei, Pomacentridae), a new species of damselfish from mesophotic coral ecosystems of the Maldives

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rocha, Luiz A., Pinheiro, Hudson T., Najeeb, Ahmed, Rocha, Claudia R., Shepherd, Bart (2024): Chromis abadhah (Teleostei, Pomacentridae), a new species of damselfish from mesophotic coral ecosystems of the Maldives. ZooKeys 1219: 165-174, DOI: 10.3897/zookeys.1219.126777AbstractA new species of Chromis (Teleostei, Pomacentridae) is described from four specimens collected between 95 and 110 m depth in mesophotic coral ecosystems in the Maldives, Indian Ocean. Chromis abadhah sp. nov. can be distinguished from all of its congeners by the following combination of characters: dorsal-fin rays XIII, 12–13; anal-fin rays II, 11–12; pectoral-fin rays 17–18; tubed lateral-line scales 17; gill rakers 7 + 17–18 = 24–25; pearly white body with a large black marking covering the anterior two-thirds of the anal fin. The closest DNA barcode sequence (5.1 % average uncorrected genetic distance on the mitochondrial COI gene), among those available, is Chromis woodsi, a similar mesophotic species known from the coastal western Indian Ocean (Somalia to South Africa). The new species is easily distinguished from C. woodsi by having 13 dorsal spines (versus 14 in C. woodsi), the absence of a black band on the base of the tail (present in C. woodsi), and by the genetic difference.
DOI: 10.15468/httyra
title: First record of Lepidodactylus lugubris (Dumeril & Bibron, 1836) (Squamata, Gekkonidae) from Hainan Island, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Hao-Tian, Qi, Shuo, Qiu, Xian-Chun, Li, Pi-Peng (2022): First record of Lepidodactylus lugubris (Dumeril & Bibron, 1836) (Squamata, Gekkonidae) from Hainan Island, China. Herpetozoa 35: 99-105, DOI: http://dx.doi.org/10.3897/herpetozoa.35.e84045, URL: http://dx.doi.org/10.3897/herpetozoa.35.e84045
DOI: 10.15468/sabn95
title: Morphology, phylogeny, mitogenomics and metagenomics reveal a new entomopathogenic fungus Ophiocordyceps nujiangensis (Hypocreales, Ophiocordycipitaceae) from Southwestern China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sun, Tao, Zou, Weiqiu, Dong, Quanying, Huang, Ou, Tang, Dexiang, Yu, Hong (2022): Morphology, phylogeny, mitogenomics and metagenomics reveal a new entomopathogenic fungus Ophiocordyceps nujiangensis (Hypocreales, Ophiocordycipitaceae) from Southwestern China. MycoKeys 94: 91-108, DOI: http://dx.doi.org/10.3897/mycokeys.94.89425, URL: http://dx.doi.org/10.3897/mycokeys.94.89425
DOI: 10.15468/x2bet3
title: Description of a new Osedax (Annelida, Polychaeta, Siboglinidae) species colonizing cow bones in the South Atlantic Ocean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gularte, Thammy, Sumida, Paulo Y. G., Bergamo, Gilberto, Rouse, Greg W. (2024): Description of a new Osedax (Annelida, Polychaeta, Siboglinidae) species colonizing cow bones in the South Atlantic Ocean. ZooKeys 1219: 215-231, DOI: 10.3897/zookeys.1219.134005AbstractA new species of Osedax is described here using molecular and morphological data. It was found at the depth of 550 m off the Brazilian coast through experimental deployment of cow bones. Osedax nataliae sp. nov. is the second Osedax species from the Southwest Atlantic Ocean and had been previously reported as Osedax ‘ BioSuOr- 4 ’. Phylogenetic analysis of five concatenated genetic makers (28 S rDNA, Histone H 3, 18S rDNA, 16 S rDNA, and cytochrome c oxidase I) placed Osedax nataliae sp. nov. within a well-supported Osedax Clade V, nested within a clade of Pacific Ocean Osedax though with poor support. The minimum interspecific COI distance between O. nataliae sp. nov. and another known Osedax was 13.92 % (closest to O. ‘ sagami- 3 ’). The maximum intraspecific COI diversity (uncorrected) within O. nataliae sp. nov. sampled here was 2.44 % and population structure was visualized via haplotype network analysis. Morphologically, O. nataliae sp. nov. is characterized by its reddish orange crown of palps and a ventral yellowish collar on the anterior trunk where it meets the base of the crown. Osedax nataliae sp. nov. shares features with other Clade V species, notably pinnules inserted on the outer margin of palps. Additionally, the presence of dwarf males within the tube lumen of females was documented. Further sampling and research in the Southern Hemisphere are needed to understand the diversity and biogeography of Osedax across the world’s oceans.
DOI: 10.5281/zenodo.15795124
title: Process-based simulation of long-term dissolved inorganic carbon fluxes in a karst catchment, Southwest China

description: This dataset contains input and output files for the simulation of dissolved inorganic carbon (DIC) dynamics in the Houzhai catchment, a typical karst site located in Guizhou Province, Southwest China. Over the past three decades, the region has experienced notable environmental changes, including climate warming, reduced precipitation, and forest recovery (greening).

The simulation aims to investigate how and to what extent climate change and forest recovery have influenced the long-term declining trends of DIC production and export rates at the catchment scale. The simulations were conducted using the open-source reactive transport model BioRT-Flux-PIHM, which couples biogeochemical reactions with hydrological processes.
DOI: 10.5281/zenodo.16476737
title: Process-based simulation of long-term dissolved inorganic carbon fluxes in a karst catchment, Southwest China

description: This dataset contains input and output files for the simulation of dissolved inorganic carbon (DIC) dynamics in the Houzhai catchment, a typical karst site located in Guizhou Province, Southwest China. Over the past three decades, the region has experienced notable environmental changes, including climate warming, reduced precipitation, and forest recovery (greening).

The simulation aims to investigate how and to what extent climate change and forest recovery have influenced the long-term declining trends of DIC production and export rates at the catchment scale. The simulations were conducted using the open-source reactive transport model BioRT-Flux-PIHM, which couples biogeochemical reactions with hydrological processes.
DOI: 10.15468/qk3jh6
title: Nepenthes candalaga (Nepenthaceae), a new species from eastern Mindanao, Philippines

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lagunday, Noel E., Rosa, Sherolai Dela, Cleofei, Clint Michael B., Jr, Romeo Patano, Coritico, Fulgent P., Amoroso, Victor B. (2022): Nepenthes candalaga (Nepenthaceae), a new species from eastern Mindanao, Philippines. Phytotaxa 554 (3): 285-292, DOI: 10.11646/phytotaxa.554.3.7AbstractA new endemic species, Nepenthes candalaga (Nepenthes sect. Alata) from Mt. Candalaga (eastern Mindanao, Philippines) is here described and illustrated. This new taxon resembles N. justinae but can be easily distinguished in having the lamina with 2‒3 longitudinal nerves, orbicular lid, non-bifid lid spur tip, triangular lid appendage, short banner-shaped trap wings, and absent upper pitcher rim. The species is assessed as Critically Endangered (CE) according to the IUCN criteria. This novelty is the 38 th species of Nepenthes in Mindanao making the island with the highest concentration of Nepenthe s species in the Philippines. This discovery increases the number of Nepenthes species in the Philippines to 61. The new taxon described faces threats of deforestation and habitat loss without legislative protection.
DOI: 10.15468/mhu38x
title: Morphology and biometry of two Chinese diploid parthenogenetic Artemia populations with a special emphasis on the gonopods and frontal knobs of rare males

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zheng, Bo, Sun, Shi-chun (2023): Morphology and biometry of two Chinese diploid parthenogenetic Artemia populations with a special emphasis on the gonopods and frontal knobs of rare males. Zoologischer Anzeiger 303: 80-89, DOI: 10.1016/j.jcz.2023.02.001, URL: http://dx.doi.org/10.1016/j.jcz.2023.02.001
DOI: 10.34740/kaggle/dsv/14276054
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/fkpgpx
title: On the systematic of the water mite Piona annulata (Thor, 1900) (Acari, Hydrachnidia: Pionidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tuzovskij, Petr V., .,. (2016): On the systematic of the water mite Piona annulata (Thor, 1900) (Acari, Hydrachnidia: Pionidae). Ecologica Montenegrina 6: 9-14, DOI: 10.37828/em.2016.6.2, URL: https://www.biotaxa.org/em/article/view/em.2016.6.2
DOI: 10.5281/zenodo.18041974
title: Table 1 in Cymbopleura natellia - a new species from Transbaikal area (Russia, Siberia) described on the basis of molecular and morphological investigation

description: Table 1. Differences between species of the genus Cymbopleura.
OutlineEndsAxial areaCentral areaValve length (μm)Valve width (μm)Striae in 10 μmAreolae in 10 μmDistributionReferenceC. natellia sp. nov.subelliptical, dorsiventral with moderately convex dorsal margin and slightly convex ventral margin, which more often almost straight near the valve centrebluntly rostrate, not protractednarrow, more often weakly expands to central area, less often - almost not expands, almost the median line of the valvemore or less pronounced, rounded, 1/3 the valve breadth17.6-23.58.7-9.513-15 at the central part, 18-20 near the ends30-35Russia: Baikal LakeThis studyC. naviculiformiselliptic-lanceolate, moderately dorsiventral, dorsal margin strongly arched, ventral margin slightly convex to nearly flatrostrate to subcapitate, narrow-protractednarrow, linear or slightly broader towards the relatively large central area, almost in the median line of the valverounded, one-half to two-thirds valve width26-509.0-13.010-15 at the central part, 16-19 near the ends27-35Widely distributedKrammer 2003; Bahls 2019C. designatabroadly lanceolate, moderately dorsiventral with strongly arched dorsal and ventral marginsapiculate, extending laterally from valve endsarea about 1/4th to 1/5th valve width, slightly curved and narrower near apicesrounded, scarcely wider than the axial area26-379.0-11.612-14 at the central part, up to 18 near the ends26-30Sub-Arctic and ArcticLange-Bertalot and Genkal 1999; Bahls 2019C. frequensnot or very slightly dorsiventral, subelliptical-lanceolate, dorsal an ventral margins moderately archedprotracted, apiculate to rostratenarrow, linear, narrowing slightly towards to the ends, almost median line of the valveirregular, asymmetric space of different extent14-386-911-14 at the central part, 16 near the ends30-36HolarcticKrammer 2003; Kulikovskiy et al. 2016; Bahls 2019C. hercynicaslightly dorsiventral, broadly subelliptical to elliptical-lanceolate, dorsal margins strongly, ventral margin slightly archedapiculate to subrostrate protractedvery narrow, almost the median line of the valve1/3-1/2 the valve breadth, distinctly set off, rounded, sometimes asymmetrical and then more well-developed dorsally16-407-1012-15 at the central part, up to 20 near the ends32-36Holarctic, saline habitats or with higher electrolyte contentKrammer 2003; Li et al. 2007
description: Published as part of Glushchenko, Anton, Gusev, Evgeniy, Maltsev, Yevhen, Kociolek, John Patrick, Kuznetsova, Irina & Kulikovskiy, Maxim, 2021, Cymbopleura natellia - a new species from Transbaikal area (Russia, Siberia) described on the basis of molecular and morphological investigation, pp. 95 in PhytoKeys 183 on page 95, DOI: 10.3897/phytokeys.183.72285
DOI: 10.5281/zenodo.18041975
title: Table 1 in Cymbopleura natellia - a new species from Transbaikal area (Russia, Siberia) described on the basis of molecular and morphological investigation

description: Table 1. Differences between species of the genus Cymbopleura.
OutlineEndsAxial areaCentral areaValve length (μm)Valve width (μm)Striae in 10 μmAreolae in 10 μmDistributionReferenceC. natellia sp. nov.subelliptical, dorsiventral with moderately convex dorsal margin and slightly convex ventral margin, which more often almost straight near the valve centrebluntly rostrate, not protractednarrow, more often weakly expands to central area, less often - almost not expands, almost the median line of the valvemore or less pronounced, rounded, 1/3 the valve breadth17.6-23.58.7-9.513-15 at the central part, 18-20 near the ends30-35Russia: Baikal LakeThis studyC. naviculiformiselliptic-lanceolate, moderately dorsiventral, dorsal margin strongly arched, ventral margin slightly convex to nearly flatrostrate to subcapitate, narrow-protractednarrow, linear or slightly broader towards the relatively large central area, almost in the median line of the valverounded, one-half to two-thirds valve width26-509.0-13.010-15 at the central part, 16-19 near the ends27-35Widely distributedKrammer 2003; Bahls 2019C. designatabroadly lanceolate, moderately dorsiventral with strongly arched dorsal and ventral marginsapiculate, extending laterally from valve endsarea about 1/4th to 1/5th valve width, slightly curved and narrower near apicesrounded, scarcely wider than the axial area26-379.0-11.612-14 at the central part, up to 18 near the ends26-30Sub-Arctic and ArcticLange-Bertalot and Genkal 1999; Bahls 2019C. frequensnot or very slightly dorsiventral, subelliptical-lanceolate, dorsal an ventral margins moderately archedprotracted, apiculate to rostratenarrow, linear, narrowing slightly towards to the ends, almost median line of the valveirregular, asymmetric space of different extent14-386-911-14 at the central part, 16 near the ends30-36HolarcticKrammer 2003; Kulikovskiy et al. 2016; Bahls 2019C. hercynicaslightly dorsiventral, broadly subelliptical to elliptical-lanceolate, dorsal margins strongly, ventral margin slightly archedapiculate to subrostrate protractedvery narrow, almost the median line of the valve1/3-1/2 the valve breadth, distinctly set off, rounded, sometimes asymmetrical and then more well-developed dorsally16-407-1012-15 at the central part, up to 20 near the ends32-36Holarctic, saline habitats or with higher electrolyte contentKrammer 2003; Li et al. 2007
description: Published as part of Glushchenko, Anton, Gusev, Evgeniy, Maltsev, Yevhen, Kociolek, John Patrick, Kuznetsova, Irina & Kulikovskiy, Maxim, 2021, Cymbopleura natellia - a new species from Transbaikal area (Russia, Siberia) described on the basis of molecular and morphological investigation, pp. 95 in PhytoKeys 183 on page 95, DOI: 10.3897/phytokeys.183.72285
DOI: 10.15468/nqu272
title: Clarifying the nomenclature of Pomarea species (Monarchidae) from the Society Islands

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dickinson, Edward C., Lee, Michael, Cibois, Alice, Boussès, Patrick, Fuchs, Jérôme (2019): Clarifying the nomenclature of Pomarea species (Monarchidae) from the Society Islands. Bulletin of the British Ornithologists’ Club 139 (1): 65-74, DOI: 10.25226/bboc.v139i1.2019.a5, URL: https://bioone.org/journals/bulletin-of-the-british-ornithologists-club/volume-139/issue-1/bboc.v139i1.2019.a5/Clarifying-the-nomenclature-of-Pomarea-species-Monarchidae-from-the-Society/10.25226/bboc.v139i1.2019.a5.full
DOI: 10.15468/dl.a3ymew
title: Occurrence Download

description: A dataset containing 4614307 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coloeus monedula",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 4614307 records from 3234 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064489-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zv4mx8
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((30.34584 50.54521,30.33616 50.53817,30.36052 50.52817,30.38121 50.5356,30.38067 50.5387,30.37883 50.54051,30.3772 50.54376,30.36983 50.54921,30.35875 50.54966,30.34584 50.54521))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0183563-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tx3a8k
title: Occurrence Download

description: A dataset containing 5631897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((26.7542939189847 1.2186193716968,36.9991642472184 13.6345880476356,41.544901412726 10.038706409249,37.5419388341447 2.16847489881781,35.84576825 -7.80500813595271,36.2528491901947 -16.0144737632128,34.2174444892211 -16.5572483501391,27.5006089760084 -8.95840413317107,26.7542939189847 1.2186193716968))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5631897 records from 1137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0260511-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a28hzn
title: Occurrence Download

description: A dataset containing 92779 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erica tetralix L.",
 "Year 2000-2023"
 ]
}

 The dataset includes 92779 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238255-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rhmzcp
title: Occurrence Download

description: A dataset listing the 12341 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((1.89478 41.22895,1.97166 41.22651,2.10111 41.25328,2.48702 41.54096,2.31226 41.6281,2.1019 41.59181,1.90287 41.5458,1.77828 41.37725,1.89478 41.22895))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 12341 records were derived from 302 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0250187-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p72yhp
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepanthes myiophora Luer"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006926-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfu2pm
title: Occurrence Download

description: A dataset containing 3454 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lathyrus nevadensis S.Watson"
 ]
}

 The dataset includes 3454 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004580-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14430869
title: RNA Language Models: Zero-shot evaluations in RNA secondary structure and function classification

description: Codes and datasets for zero-shot RNA classifications and RNA secondary structure prediction as well as protein contact map predictions.
DOI: 10.5281/zenodo.14473390
title: RNA Language Models: Zero-shot evaluations in RNA secondary structure and function classification

description: Codes and datasets for zero-shot RNA classifications and RNA secondary structure prediction as well as protein contact map predictions.

Added supplementary figure 1 and supplementary figure 2 to version 1.
DOI: 10.5281/zenodo.15164871
title: RNA Language Models: Zero-shot evaluations in RNA secondary structure and function classification

description: Codes and datasets for zero-shot RNA classifications and RNA secondary structure prediction as well as protein contact map predictions.

Modified the dataset and results of the secondary structure prediction task in version 2!!!
DOI: 10.15468/dl.9xh26b
title: Occurrence Download

description: A dataset containing 442924 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scarus Forsskål, 1775"
 ]
}

 The dataset includes 442924 records from 423 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007711-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.