cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18126/5ly6-orul
title: Biofilm rupture by laser-induced stress waves increases with loading amplitude, independent of location

description: Integral to the production of safe and biocompatible medical devices is to determine the interfacial properties that effect or control strong biofilm adhesion. The laser spallation technique has recently emerged as an advantageous technique to quantify biofilm adhesion across candidate biomedical surfaces. However, there is a possibility that membrane tension is a factor that contributes to the stress required to separate biofilm and substrate. In that case, the stress amplitude, controlled by laser fluence, that initiates biofilm rupture would vary systematically with location on the biofilm. Film rupture, also known as spallation, occurs when film material is ejected during stress wave loading. In order to determine effects of membrane tension, we present a protocol that measures spall size with increasing laser fluence (variable fluence) and with respect to distance from the biofilm centroid (iso-fluence). Streptococcus mutans biofilms on titanium substrates serves as our model system. A total of 185 biofilm loading locations are analyzed in this study. We demonstrate that biofilm spall size increases monotonically with laser fluence and apply our procedure to failure of non-biological films. In iso-fluence experiments, no correlation is found between biofilm spall size and loading location, thus providing evidence that membrane tension does not play a dominant role in biofilm adhesion measurements. We recommend our procedure as a straightforward method to determine membrane effects in the measurement of adhesion of biological films on substrate surfaces via the laser spallation technique.
DOI: 10.18126/4nm2-0g70
title: Data for Atomic Resolution Convergent Beam Electron Diffraction Analysis Using Convolutional Neural Networks

description: Simulated and experimental 4D STEM data sets acquired from SrTiO3 [100] as a function of thickness. Convolutional neural networks trained to determine the sample thickness from 4D STEM data.
DOI: 10.15468/fxx5cv
title: Réseau Loup - Lynx ONCFS - Réseau Loup-Lynx : Répartition communale Occasionnelle du Loup en 1996

description: Cartographie de synthèse de la présence détectée du Loup en France métropolitaine par un réseau de correspondants départementaux multipartenaire, formé et piloté par l'OFB sur le plan scientifique et technique et géré administrativement au niveau local par les DDT. Ce jeu de donnée ventile la présence de l'espèce sur les mailles 10km x 10km européenne selon la régularité des observations (présence dite occasionnelle vs régulière de l'espèce), sur la base de la récurrence spatiale et la quantité d'indices ou constats d'attaques validés au cours de la dernière triennale biologique (ex: données recueillies entre le 01/04/2017 et le 31/03/2020 pour l'exercice 2020). Ce jeu de donnée correspond à la présence Occasionnelle de l'espèce.
DOI: 10.15468/9eepny
title: Projet éolien - Chauves-souris - Points d'écoute sur mât de mesure

description: Listes des chauves-souris contactées grâce à des points d'écoute réalisés en 2014 (enregistrement sur 8 mois continus) sur mât de mesure situés au sein de l'aire d'étude du projet éolien des Pâtis Longs sur la commune de Luzay (79)
DOI: 10.15468/7y39f4
title: Parc éolien de Niedervisse - Suivi mortalité ICPE 2017 NIED

description: Suivi de la mortalité de l'avifaune et des chiroptères sur le parc éolien de Niedervisse (conforme réglementation ICPE).
DOI: 10.1594/pangaea.773799
title: Benthic foraminifers of sediment core Skagerrak01_GA113-2Aa
DOI: 10.6084/m9.figshare.25292662.v1
title: mashID database it identify mycobacteria

description: db_fodler=/media/36tb/db/mashID/mycoID<br># Mbovis mashID db updatehttps://github.com/duceppemo/mashID<br># Download RefSeq -&gt; 10719conda activate ncbibash ~/prog/ncbi/refseqDownloader.sh \ -d bacteria \ -q "Mycobacterium,Mycolicibacterium,Mycolicibacter,Mycolicibacillus,Mycobacteroides" \ -u \ -f fna \ -o "$db_fodler" \ -r<br>conda deactivate<br># Remove bad downloads -&gt; 19rm "${db_fodler}"/*.gz<br># Remove Mycobacterium sp. -&gt; 290find "$db_fodler" -name "*_sp_*" -exec rm {} \;<br># Derepconda activate mashIDpython ~/prog/Assembly-Dereplicator/dereplicator.py \ --distance 0.001 \ --threads $(nproc) \ "${db_fodler}"/fna \ "${db_fodler}"/fna_derep_0.001<br>conda deactivate<br><br># Add bovis ref genomeconda activate ncbibash get_assemblies_v2.sh \ -q NC_002945.4 \ -t refseq \ -o "${db_fodler}"/fna_derep_0.001 \ -r \ -u<br>conda deactivate<br>conda activate mashIDpython ~/prog/mashID/make_mashID_db.py \ -i "${db_fodler}"/fna_derep_0.001 \ -o /media/36tb/db/mashID \ -p mycobacteria_2024-02-23.msh \ -t $(nproc) \ -s 10000 \ -k 21<br><br>baseDir=/home/bioinfo/analyses/MBWGS051<br>python ~/prog/mashID/mashID.py \ -i "${baseDir}"/fastq \ -o "${baseDir}"mashID \ -d /media/36tb/db/mashID/mycobacteria_2024-02-23.msh \ -p 3 <br><br>
DOI: 10.6084/m9.figshare.25292662
title: mashID database it identify mycobacteria

description: db_fodler=/media/36tb/db/mashID/mycoID<br># Mbovis mashID db updatehttps://github.com/duceppemo/mashID<br># Download RefSeq -&gt; 10719conda activate ncbibash ~/prog/ncbi/refseqDownloader.sh \ -d bacteria \ -q "Mycobacterium,Mycolicibacterium,Mycolicibacter,Mycolicibacillus,Mycobacteroides" \ -u \ -f fna \ -o "$db_fodler" \ -r<br>conda deactivate<br># Remove bad downloads -&gt; 19rm "${db_fodler}"/*.gz<br># Remove Mycobacterium sp. -&gt; 290find "$db_fodler" -name "*_sp_*" -exec rm {} \;<br># Derepconda activate mashIDpython ~/prog/Assembly-Dereplicator/dereplicator.py \ --distance 0.001 \ --threads $(nproc) \ "${db_fodler}"/fna \ "${db_fodler}"/fna_derep_0.001<br>conda deactivate<br><br># Add bovis ref genomeconda activate ncbibash get_assemblies_v2.sh \ -q NC_002945.4 \ -t refseq \ -o "${db_fodler}"/fna_derep_0.001 \ -r \ -u<br>conda deactivate<br>conda activate mashIDpython ~/prog/mashID/make_mashID_db.py \ -i "${db_fodler}"/fna_derep_0.001 \ -o /media/36tb/db/mashID \ -p mycobacteria_2024-02-23.msh \ -t $(nproc) \ -s 10000 \ -k 21<br><br>baseDir=/home/bioinfo/analyses/MBWGS051<br>python ~/prog/mashID/mashID.py \ -i "${baseDir}"/fastq \ -o "${baseDir}"mashID \ -d /media/36tb/db/mashID/mycobacteria_2024-02-23.msh \ -p 3 <br><br>
DOI: 10.15468/fw6p65
title: Parc éolien du Chemin Blanc - Suivi des chiroptères en nacelle - Chemin Blanc - 2021

description: Suivi de l’activité chiroptérologique en nacelle de l’éolienne CB-E17, sur le parc éolien de Chemin Blanc, effectué dans le cadre du suivi post-implantation d’une installation classée ICPE.
DOI: 10.18126/1m40-u86g
title: Virtual Excited State Reference for the Discovery of Electronic Materials (VERDE Materials DB)
DOI: 10.15468/ctwlpp
title: Ground beetles (Coleoptera, Carabidae) of Volga-Kama Nature Reserve

description: This Dataset shows the results of annual investigations in Volga-Kama Nature Reserve with respect to occurrences of Ground beetles (Coleoptera, Carabidae) collected from pitfall traps.
DOI: 10.15468/8ajxcr
title: Système d'Information sur la Nature et les Paysages d'Ile de France - Données de la naturaliste Julie Maratrat

description: Jeux de données provenant de la base de données CETTIA du Système d'Information sur la Nature et les Paysages d'Ile de France. Il concerne la faune à l'exception des insectes.
DOI: 10.15468/e96d6s
title: Projet de développement urbain - ZAC Multisite

description: Contact point d'écoute, relevé opportuniste, quadra, relevé phytosocioécologique, capture et relâche sur site, transects le long des fossés et cours d'eau, repérage cartographique
DOI: 10.15472/t6t4gu
title: Macroinvertebrados asociados a cuatro afluentes del río Atrato en los municipios de Quibdó y Río Quito, Chocó. 2016

description: La integración de la aplicación de indicadores biológicos (macroinvertebrados), junto con los análisis microbiológicos y fisicoquímicos, en lo referente a la evaluación de la calidad del agua, se convierte pues en una alternativa altamente efectiva en la búsqueda de un mayor control y buen uso de la calidad del agua superficial. En el presente estudio se realiza un análisis de la calidad del agua de cuatro afluentes del rio Atrato, en el municipio de Quibdó- Chocó, el cual ha sido sometido a múltiples presiones y trasformaciones durante varios años, para ello, se harán muestreos de macroinvertebrados acuáticos, dado que estos organismos son extremadamente sensibles a los cambios en la calidad del agua y nos brindan una visión en retrospectiva de lo ocurrido en dicho ambiente; complementándolo también con los análisis fisicoquímicos, que nos permiten determinar y cuantificar con mayor precisión el tipo de contaminante por el cual se encuentra este rio que ha brindado múltiples servicios ambientales, sociales y económicos a las comunidades asentadas en su entorno.
DOI: 10.15468/t5up5a
title: Parc éolien de la Plaine de la Minée - Insectes - Inventaire non protocolé

description: Liste des insectes contactés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude immédiate du projet éolien de la Plaine de la Minée commune de Chantonnay (85)
DOI: 10.15468/uwc939
title: Short animal diversity notes from Protasiv Yar, Kyiv, 2022

description: The dataset contains notes and records of fauna representatives registered on the territory of Protasiv Yar - a promissing object of nature reserve fund. This dataset is prepared in honor of Roman Ratushnyi - Ukrainian public figure, journalist, theorist of revolutionary neo-urbanism and volunteer soldier, who was killed during the Battle of Izium on 9 June 2022, in an enemy ambush by Russian occupants. He is known for the struggle for the preservation of the capital's Protasiv Yar tract.
DOI: 10.3886/e198688
title: McCambly, H. and Aguilar-Smith, S.: Pork-Barrel Politics and Racialized Transformation?: A Critical Quantitative Study of the Distribution and Use of Federal Academic Earmarks

description: Paper abstract: Troubled by the inequities in competitive grantmaking, we use critical quantitative methods to analyze the FY2023 federal academic earmarks as a potential mechanism for racialized change work. Specifically, we ask: To what extent does Congress distribute academic earmarks in ways that reinforce or weaken the racialized stratification of resources across organizations in the field? Accordingly, we identify distribution patterns of academic earmarks, considering the allocation of dollars and types of earmarks (i.e., general capacity-building versus specialized grants) across colleges and universities, between white-serving institutions and minority-serving institutions (MSIs), and among MSIs. Based on our analysis, Congress favored a racially reproductive funding portfolio, driven by smaller and more restrictive allocations, not fewer earmarks. However, the distribution of earmarks among MSIs defied normed expectations, as Congress did not privilege whiter, more prestigious MSIs, signaling the potential of pork-barrel politics for racially reparative work. <br><br>Data: Merged federal earmarks data for FY2023 and data from the Integrated Postsecondary Data System<br>Stata dofile: Containing basic analytic processes used in the paper<br><br><br>
DOI: 10.3886/e198688v1
title: McCambly, H. and Aguilar-Smith, S.: Pork-Barrel Politics and Racialized Transformation?: A Critical Quantitative Study of the Distribution and Use of Federal Academic Earmarks

description: Paper abstract: Troubled by the inequities in competitive grantmaking, we use critical quantitative methods to analyze the FY2023 federal academic earmarks as a potential mechanism for racialized change work. Specifically, we ask: To what extent does Congress distribute academic earmarks in ways that reinforce or weaken the racialized stratification of resources across organizations in the field? Accordingly, we identify distribution patterns of academic earmarks, considering the allocation of dollars and types of earmarks (i.e., general capacity-building versus specialized grants) across colleges and universities, between white-serving institutions and minority-serving institutions (MSIs), and among MSIs. Based on our analysis, Congress favored a racially reproductive funding portfolio, driven by smaller and more restrictive allocations, not fewer earmarks. However, the distribution of earmarks among MSIs defied normed expectations, as Congress did not privilege whiter, more prestigious MSIs, signaling the potential of pork-barrel politics for racially reparative work. <br><br>Data: Merged federal earmarks data for FY2023 and data from the Integrated Postsecondary Data System<br>Stata dofile: Containing basic analytic processes used in the paper<br><br><br>
DOI: 10.18126/8jfl-i4d8
title: AFRL AM Modeling Challenge Series: Challenge 1 Data Package
DOI: 10.15468/idmeon
title: SILENE-FAUNE-PACA - DREAL_PACA_-_N2000_-_GIPREB_2017_12_18

description: DREAL PACA - N2000 - GIPREB
DOI: 10.15468/brbbd4
title: Données de François Catzeflis - Mammifères en Martinique

description: Données de Mammifères en Martinique observées par François Catzeflis
DOI: 10.15468/2tf56u
title: Projet d'aménagement à 2x3 voies de l'autoroute A10 entre Poitiers et Veigné - Données surfaciques

description: Ensemble des données surfaciques (faune, flore, habitats naturels) naturalistes pour le projet d'aménagement à 2x3 voies de l'autoroute A10 entre Poitiers et Veigné.
DOI: 10.18126/1cko-gow0
title: Local Structure Controlling the Glass Transition in a Prototype Metal-Metalloid Glass

description: Molecular dynamics trajectories on cooling of Pd82Si18 computed with the Sheng EAM potential. Motif extraction applied to those trajectories. Atomic models of the resulting motifs.

Funding: NSF DMR-1728933
DOI: 10.18126/s1l5-jnfm
title: Dataset for "Diffusion Monte Carlo Study of the O2 Adsorption on a Single Layer Graphene"

description: Dataset for "Diffusion Monte Carlo Study of the O2 Adsorption on a Single Layer Graphene", Hyeondeok Shin, Ye Luo, Anouar Benali, Yongkyung Kwon

This work was supported by the U.S. Department of Energy, Office of Science, Basic Energy Sciences, Materials Sciences and Engineering Division, as part of the Computational Materials Sciences Program and Center for Predictive Simulation of Functional Materials.
DOI: 10.18126/ooin-ce23
title: Reciprocal Space Imaging of Ionic Correlations in Intercalation Compounds

description: These files contain data sets used in the 3D ΔPDF analysis of Na0.45V2O5, reported in “Reciprocal Space Imaging of Ionic Correlations in Intercalation Compounds” by Krogstad et al. that is being published in Nature Materials. For further information, contact Ray Osborn (rosborn@anl.gov).

The files stored here are NeXus files (extension .nxs). These are HDF5 files that conform to the NeXus format (http://www.nexusformat.org). These may be opened in any generic HDF5 viewer, but it is easiest to use NeXpy (http://nexpy.github.io/nexpy/), an open-source application, which enables the plotting of arbitrary slices of multidimensional data. Once each file has been opened, using a standard Open File dialog, it appears in a tree view, using which each data set can be selected and plotted using a double-click. The plotting axes can be switched and limits set using the tabs below the plotting window.  

The files in the top-level directory contain external links to the S(Q), ΔPDF, and, in some cases, total PDF results at each temperature. 

For example, the 30K data is stored in 'na04v2o5_30K.nxs'. Within the file there are three data groups and a group containing sample information.

Path: /entry/data - 3D S(Q)
Path: /entry/dpdf - 3D ΔPDF
Path: /entry/tpdf - 3D Total PDF (at 30K, 150K, and 275K only)
Path: /entry/sample - crystallographic information (lattice parameters, angles, symmetry)

The data groups contain external links to files stored in a subdirectory, e.g., na04v2o5_30K.nxs references files in the 30K/ subdirectory. Therefore, to view data at a particular temperature, please download the subdirectory as well. The files will still open in NeXpy without the linked files, but the data cannot be plotted.
DOI: 10.18126/t28a-uwgw
title: Self-Assembled Peptide Absorption Spectra

description: Dataset for ``Revealing the sequence-structure-electronic property relation of self-assembling $\pi$-conjugated oligopeptides by integrated molecular and quantum mechanical modeling''.
DOI: 10.18126/iv89-3293
title: Correlative Microscopy Data for Quantification of Prior Austenite Grain Size in AF9628 Steel

description: The files in this dataset are analyzed, discussed, and referenced in these two publications: 

1. V. Sinha, M. Gonzales, R.A. Abrahams, B.S. Song, and E.J. Payton, “Correlative microscopy for quantification of prior austenite grain size in AF9628 steel”, Materials Characterization (Accepted).

2. V. Sinha, M. Gonzales, and E.J. Payton, “Datasets acquired with correlative microscopy method for delineation of prior austenite grain boundaries and characterization of prior austenite grain size in a low-alloy high-performance steel”, Data in Brief (Submitted).
DOI: 10.15468/w545b8
title: parc éolien d'Allainville - Suivi de l'avifaune hiver 2021

description: 2 passages en hivernant et 3 en nidification
DOI: 10.15468/sq6b96
title: Autorisation 2018-61 - Particulier

description: Données récoltées dans le cadre de l'autorisation 2018-61 délivrée à monsieur Cyrille PEREZ - insectes et invertébrés
DOI: 10.15468/pz5vxf
title: Chiroptères inventoriés en altitude sur le parc éolien du Rio (2020)

description: Le jeu de données contient les résultats des écoutes en hauteur et en continu des chiroptères en nacelle sur le parc éolien du Rio en 2020. Il s'agit du suivi réalisé dans le cadre du suivi environnemental post-implantation conformément à l'article 12 de l'arrêté du 26/08/2011 modifié.
DOI: 10.15468/hf799f
title: Parc éolien Saint-Pierremont - 2021 - 2021_suivi_mortalite_chiro_avifaune_Saintpierremont

description: Suivi mortalité avifaune et chiroptère du parc éolien de Saint Pierremont en 2021
DOI: 10.15468/qj5mgm
title: Projet d'extention et de modification des modalités d'exploitation d'une carrière de matériaux alluvionnaires et d'une installation de stockage de déchets inertes au lieu-dit "Chemin Charrette" de la commune de Saint-Pierre - Inventaires opportunistes des reptiles

description: Observations opportunistes de reptiles
DOI: 10.18126/rubn-1mnf
title: Dataset for "Accurate atomic total energies for correlation consistent effective core potentials"

description: 
Dataset for "Accurate atomic total energies for correlation consistent effective core potentials"

Included are input and output files for various codes. For each code, outputs are organized per atom.

Funding: U.S. Department of Energy

Contact: Abdulgani Annaberdiyev <aannabe@ncsu.edu>
DOI: 10.18126/vu60-4htj
title: Training and Validation  Dataset of MgAl2O4 SEM Fracture Images for "Toward Quantitative Fractography Using Convolutional Neural Networks"

description: This is a dataset of SEM fracture images for training and validation of deep learning algorithms.  The fracture surfaces of the MgAl2O4 ceramic material can be used to train a convolutional neural network for identifying the intergranular and transgranular fracture modes.

European Union's Horizon2020 Programme (Excellent Science, Marie-Sklodowska-Curie Actions) under REA grant agreement 675602 (Project OUTCOME)

Contact: Stylianos Tsopanidis <tsopanidisstelios@gmail.com> or Shmuel Osovski <shmuliko@technion.ac.il>
DOI: 10.34740/kaggle/dsv/7707691
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.15468/n7swpx
title: Développement du pôle commercial de Peyssilieu (Meyzieu 69) - Inventaire reptile_Meyzieu -Pôle commercial de Peyssilieu

description: Le projet a pour but la restructuration et l'extension du centre commerciale de Peyssilieu, situé en façade de la rocade Est et en entrée de ville Ouest de la commune de Meyzieu. Ce projet permettrai le développement du Grand Montout/Peyssilieu, valoriserai l'entrée Ouest de la commune de Meyzieu et répondrai aux besoins des habitants des alentours. Le secteur Nord est occupé par le centre commerciale déjà existant, le secteur Sud est un espace de culture. Les impacts à prévoir sur les espèces faune/flore présente sur le site d'étude et sur les habitats sont divers, destruction d'habitats naturels, propagation d'espèces invasives et dérangement de la faune en phase de chantier.
DOI: 10.18126/z47n-qh7a
title: Dataset for Defect Energetics of Cubic Hafnia from Quantum Monte Carlo Simulations

description: Dataset for "Defect energetics of cubic hafnia from quantum Monte Carlo simulations" Raghuveer Chimata, Hyeondeok Shin, Anouar Benali, and Olle Heinonen

This work was supported by the U.S. Department of Energy, Office of Science, Basic Energy Sciences, Materials Sciences, and Engineering Division, as part of the Computational Materials Sciences Program and Center for Predictive Simulation of Functional Materials. This work was supported by the Office of Science, U.S. Department of Energy, as part of the Argonne Leadership Computing Facility Aurora Early Science Project.
DOI: 10.15468/cjtkhv
title: Parc éolien de Longèves - 17 - Longèves - Activité chiroptères 2020

description: Suivi activité chiroptères à hauteur de nacelle 2020
DOI: 10.15468/gxgy38
title: 07-Freyssenet Parc éolien Tourrenergies - Biodiversité projet éolien Tourrenergies FREYSSENET 07

description: Jeu de données faune et flore complet des inventaires biodiversité effectués dans le cadre de la réalisation d'une étude d'impact pour l'implantation d'une éolienne sur la commune de Freyssenet
DOI: 10.15468/vqjn2d
title: Projet d'une zone d'aménagement économique à Malamani (Chirongui) EPFAM - OISEAU_OPPORT

description: Données d'observation sur les oiseaux
DOI: 10.15468/2denvh
title: Swedish Malaise Trap Project (SMTP) - Conopidae

description: Occurrences in this dataset on Swedish Insects have been identified from specimens collected from for the Swedish Malaise Project (SMTP), an inventory funded by the Swedish Species Information Centre (ArtDatabanken). These records comprise the foundation for recent estimates on the size and composition of the Swedish insect fauna, published herein as sample-based datasets.
DOI: 10.18126/rhkuiqmgzmal
title: Dataset for "A new generation of effective core potentials from correlated calculations:  4s and 4p main group elements and first row additions"

description: Data is included for K, Ca, Ga, Ge, As, Se, Br, Kr and other selected elements (H, He, Li, Be, F, Ne). Included are various directories including atomic and molecular data for various ECPs. Within each atom or molecule directory, we include data for the all-electron, uncorrelated core, and various ECPs considered in the paper. Additionally, "data_csv" contains molecular binding curves for a given basis set as csv files.
DOI: 10.18126/1qjg8xuoesbla
title: Dataset for Variational Excitations in Real Solids: Optical Gaps and Insights into Many-Body Perturbation Theory

description: This is the dataset for paper "Variational Excitations in Real Solids: Optical Gaps and Insights into Many-Body Perturbation Theory", accepted by Phys. Rev. Lett. on June 13th, 2019.
DOI: 10.15468/wrzu3m
title: GRAMENTES ENERGIE_SUIVIS ENVIRONNEMENTAUX_2021 - GRAMENTES ENERGIE - suivi chiroptères 2021

description: Données issues du suivi de l'activité des chiroptères à hauteur de nacelle en 2021 sur le parc éolien de Gramentès Energie
DOI: 10.15468/mu5cgp
title: Eoliennes des Tulipes - Données Entommofaune

description: Les informations de ce jeu de données ont été acquises dans le cadre de l’étude écologique du parc éolien des Tulipes.
DOI: 10.18126/m1af2ey8tp4j
title: Interparticle Interactions in Dilute Solutions of Polyelectrolyte Complex Micelles

description: Files include background subtracted small angle X-ray scattering (SAXS) data from the Stanford Synchrotron Radiation Lightsource at SLAC National Accelerator Laboratory. Data is organized by PEO-PVBTMA/PAA polyelectrolyte complex micelles at investigated concentrations.