cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22588039
title: supplemental spreadsheet 2

description: Data on the 102 long COVID patients enrolled before July 2021
DOI: 10.6084/m9.figshare.22701394
title: supplemental spreadsheet 3

description: Data on CRTAC1 expression taken from Delorey et al. (2021, Nature 595:107-113)
DOI: 10.6084/m9.figshare.22701394.v1
title: supplemental spreadsheet 3

description: Data on CRTAC1 expression taken from Delorey et al. (2021, Nature 595:107-113)
DOI: 10.5281/zenodo.7811581
title: Electron-transfer-enabled concerted nucleophilic fluorination of azaarenes: selective C–H fluorination of quinolines

description: NMR FID data
DOI: 10.5281/zenodo.7811580
title: Electron-transfer-enabled concerted nucleophilic fluorination of azaarenes: selective C–H fluorination of quinolines

description: NMR FID data
DOI: 10.34740/kaggle/dsv/5584625
title: Nigerian Presidential Election 2023 Tweets
DOI: 10.5281/zenodo.7885995
title: Output data for the PyCoxMunk example notebooks

description: The PyCoxMunk python library allows users to calculate the expected sea surface reflectance under a given set of geometric and meteorological conditions. It is designed for use in satellite remote sensing and supports the majority of common satellite platforms. This archive contains data related to the example notebooks distributed with PyCoxMunk. Here you can find: 1) An input dataset for the SLSTR example notebook. 2) Output files for the SLSTR, SEVIRI and GOES example notebooks.
DOI: 10.5281/zenodo.7885996
title: Output data for the PyCoxMunk example notebooks

description: The PyCoxMunk python library allows users to calculate the expected sea surface reflectance under a given set of geometric and meteorological conditions. It is designed for use in satellite remote sensing and supports the majority of common satellite platforms. This archive contains data related to the example notebooks distributed with PyCoxMunk. Here you can find: 1) An input dataset for the SLSTR example notebook. 2) Output files for the SLSTR, SEVIRI and GOES example notebooks.
DOI: 10.5281/zenodo.7886737
title: Output data for the PyCoxMunk example notebooks

description: The PyCoxMunk python library allows users to calculate the expected sea surface reflectance under a given set of geometric and meteorological conditions. It is designed for use in satellite remote sensing and supports the majority of common satellite platforms. This archive contains data related to the example notebooks distributed with PyCoxMunk. Here you can find: 1) An input dataset for the SLSTR example notebook. 2) Output files for the SLSTR, SEVIRI and GOES example notebooks.
DOI: 10.6084/m9.figshare.22732394
title: HL-60 CTCF DMSO (hg19)

description: CTCF genomic profiling on HL60 cells using cut&run approach.
DOI: 10.6084/m9.figshare.22732394.v1
title: HL-60 CTCF DMSO (hg19)

description: CTCF genomic profiling on HL60 cells using cut&run approach.
DOI: 10.25345/c5xd0r746
title: MassIVE MSV000091838 - 29 million years of diverse mammalian proteomes recovered from the East African Rift System
title: Here, we sample small proteomes from the interior enamel of 10 fossils deposited at seven paleontological sites between 1.5 and 29 Ma in the Turkana Basin, a region of northern Kenya in the East African Rift System. We find enamel protein fragments in all fossil specimens including a 29 Ma Arsinoitherium from Topernawi, belonging to a now extinct mammalian order. Identified proteins include the classical structural enamel proteins amelogenin, enamelin, and ameloblastin, but also uncommon enamel proteins including collagens and proteases. Protein fragment abundance and average length decline in progressively older fossils, but we observe significant variability in Early Miocene preservation from site to site, with proboscidean fossils from 16 Ma Buluk preserving substantially more proteins than Rhinocerotidae and Anthracotheriidae fossils from the marginally older Locherangan (18 Ma) and Hippopotamidae from the younger site of Napudet (c. 5-11 Ma). Most specimens yield known clade-specific diagenetiforms that support field taxonomic identifications, with the notable exception of the Arsinoitherium that is without living relatives. Consensus phylogenetic trees suggest the potential for paleoproteomics in supporting taxonomic identifications and resolving evolutionary relationships of extinct taxa but should be approached with caution due to sometimes sparse fragment identification and the potential for sequence diagenesis. We identify numerous likely modifications that support the ancient age of these proteins, and the oldest examples of advanced glycation end-products and carbamylation yet known. The persistence of protein sequences within dense enamel tissues in one of the persistently warmest places on Earth promises the discovery of far older proteomes that will aid in the study of the biology and evolutionary relationships of extinct taxa.
DOI: 10.5519/qd.nj3qdse3
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (18 records)
DOI: 10.6084/m9.figshare.22732443
title: Covariate-informed latent interaction models: Addressing geographic & taxonomic bias in predicting bird-plant interactions

description: Reductions in natural habitats urge that we better understand species’ interconnection and how biological communities respond to environmental changes. However, ecological studies of species’ interactions are limited by their geographic and taxonomic focus which can distort our understanding of interaction dynamics. We focus on bird-plant interactions that refer to situations of potential fruit consumption and seed dispersal. We develop an approach for predicting species’ interactions that accounts for errors in the recorded interaction networks, addresses the geographic and taxonomic biases of existing studies, is based on latent factors to increase flexibility and borrow information across species, incorporates covariates in a flexible manner to inform the latent factors, and uses a meta-analysis data set from 85 individual studies. We focus on interactions among 232 birds and 511 plants in the Atlantic Forest, and identify 5% of pairs of species with an unrecorded interaction, but posterior probability that the interaction is possible over 80%. Finally, we develop a permutation-based variable importance procedure for latent factor network models and identify that a bird’s body mass and a plant’s fruit diameter are important in driving the presence of species interactions, with a multiplicative relationship that exhibits both a thresholding and a matching behavior.
DOI: 10.6084/m9.figshare.22732443.v1
title: Covariate-informed latent interaction models: Addressing geographic & taxonomic bias in predicting bird-plant interactions

description: Reductions in natural habitats urge that we better understand species’ interconnection and how biological communities respond to environmental changes. However, ecological studies of species’ interactions are limited by their geographic and taxonomic focus which can distort our understanding of interaction dynamics. We focus on bird-plant interactions that refer to situations of potential fruit consumption and seed dispersal. We develop an approach for predicting species’ interactions that accounts for errors in the recorded interaction networks, addresses the geographic and taxonomic biases of existing studies, is based on latent factors to increase flexibility and borrow information across species, incorporates covariates in a flexible manner to inform the latent factors, and uses a meta-analysis data set from 85 individual studies. We focus on interactions among 232 birds and 511 plants in the Atlantic Forest, and identify 5% of pairs of species with an unrecorded interaction, but posterior probability that the interaction is possible over 80%. Finally, we develop a permutation-based variable importance procedure for latent factor network models and identify that a bird’s body mass and a plant’s fruit diameter are important in driving the presence of species interactions, with a multiplicative relationship that exhibits both a thresholding and a matching behavior.
DOI: 10.5281/zenodo.7738807
title: Effect of urban heat island mitigation strategies on precipitation and temperature in Montreal, Canada: case studies - Data from numerical experiments

description: Surface data from the numerical experiments for the paper : "Effect of urban heat island mitigation strategies on precipitation and temperature in Montreal, Canada: case studies", submitted in PLOS Climate. The data is in NetCDF, structure as follow: 1 file per initialization date that contains the model outputs for the surface variables (air temperature, dew-point, relative humidity) and 1 file per initialization date that contains the accumulated precipitation.
DOI: 10.5281/zenodo.7738806
title: Effect of urban heat island mitigation strategies on precipitation and temperature in Montreal, Canada: case studies - Data from numerical experiments

description: Surface data from the numerical experiments for the paper : "Effect of urban heat island mitigation strategies on precipitation and temperature in Montreal, Canada: case studies", submitted in PLOS Climate. The data is in NetCDF, structure as follow: 1 file per initialization date that contains the model outputs for the surface variables (air temperature, dew-point, relative humidity) and 1 file per initialization date that contains the accumulated precipitation.
DOI: 10.25810/es52-xr23.60
title: Canadian Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - March 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5281/zenodo.7711118
title: MALDI-TOF-MS spectra of modern South African rodents for ZooMS

description: MALDI-TOF-MS spectra of extracted collagen from modern South African rodents. These spectra were used to develop peptide markers for Zooarchaeology by Mass Spectrometry (ZooMS). All spectra are uploaded in .mzml format. One sample per species was also analyzed with LC-MS/MS. This data is available at PXD040129 and were uploaded through MassIVE (MSV000091290).
DOI: 10.5281/zenodo.7711119
title: MALDI-TOF-MS spectra of modern South African rodents for ZooMS

description: MALDI-TOF-MS spectra of extracted collagen from modern South African rodents. These spectra were used to develop peptide markers for Zooarchaeology by Mass Spectrometry (ZooMS). All spectra are uploaded in .mzml format. One sample per species was also analyzed with LC-MS/MS. This data is available at PXD040129 and were uploaded through MassIVE (MSV000091290).
DOI: 10.5281/zenodo.7711193
title: MALDI-TOF-MS spectra of archaeological bone fragments from Klipdrift Shelter (South Africa) for ZooMS

description: MALDI-TOF-MS spectra for archaeological bone fragments from Klipdrift Shelter (South Africa). All spectra are uploaded in .mzml format.
DOI: 10.5281/zenodo.7711194
title: MALDI-TOF-MS spectra of archaeological bone fragments from Klipdrift Shelter (South Africa) for ZooMS

description: MALDI-TOF-MS spectra for archaeological bone fragments from Klipdrift Shelter (South Africa). All spectra are uploaded in .mzml format.
DOI: 10.25810/3hvn-ef66.30
title: Danish Newspaper Coverage of Climate Change or Global Warming, 2004-2023 - March 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.34740/kaggle/dsv/5584856
title: Mahanagar Yatayat Dataset
DOI: 10.25810/fx6e-r462.48
title: European Newspaper Coverage of Climate Change or Global Warming, 2004-2023 - March 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.25810/n3xc-9577.24
title: Finnish Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - March 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.22732523
title: Matminer descriptors for JARVIS-DFT

description: Prepared using: https://github.com/usnistgov/jarvis_leaderboard/blob/main/jarvis_leaderboard/benchmarks/matminer_lgbm/run.py <br> JARVIS-DFT: https://jarvis.nist.gov/jarvisdft/ <br> MatMiner: https://github.com/hackingmaterials/matminer <br> JARVIS-Leaderboard: https://pages.nist.gov/jarvis_leaderboard/ <br> Code reference: <br> https://github.com/mathsphy/paper-ml-robustness-material-property <br> https://www.nature.com/articles/s41524-023-01012-9
DOI: 10.24431/rw1k7dl
title: FatMeter and morphological data used in study to predict body composition (as water content) for Steller sea lions

description: This study tested the efficacy of data obtained from a FatMeter – a hand-held device that uses low-level microwave emissions - to estimate lipid stores in 8 trained Steller sea lions. FatMeter technology is currently used in the commercial fish industry to estimate lipid content, and this study will determine how accurately it can estimate relative body composition of Steller sea lions, which (combination of) anatomical sites provide measures that yield the highest accuracy, and whether additional morphological measures can improve the effectiveness of this technique. Data was collected during natural seasonal changes in body condition, as well as before and after experimentally induced episodes of nutritional stress. The datasets include 2 Excel files that are saved in csv format. The main file contains records for each of the 23 trials. Each record consists of measures of absolute and relative measures of total body water, morphological measures (mass, length, and girth at 5 locations), and 20 FatMeter readings (10 each when animal wet and dry) at dorsal and lateral locations at the same 5 anatomical sites as the girth measurements. The second data file contains blubber depth measurements taken at these same 10 locations for the same 23 trials. Overall, the FatMeter measurements showed great promise for providing a quick estimate of body composition in sea lions. Measurements at two locations, particularly when combined, could significantly predict relative body water content across different nutritional states. However, as with all new technology, there needs to be continued refinement and testing before implementation in field studies. The eventual goal is to provide a quick, reliable tool that can be used to evaluate the physiological status of Steller sea lions and other pinnipeds in the field. This will facilitate science-based management of Steller sea lions, particularly in reference to fishery management issues. This data was collected as part of NPRB project 1817.
DOI: 10.5517/ccdc.csd.cc284qcj
title: CCDC 2089907: Experimental Crystal Structure Determination

description: Related Article: Margarita López-Espejel, Marisol Ibarra-Rodríguez, Blanca M. Muñoz-Flores, Marcos R. Bahena-Villarreal, Azael A. Cavazos-Jaramillo, Mónica D. Garza-Villegas, Cristina Rodríguez-Padilla, Itza E. Luna-Cruz, H. V. Rasika Dias, Juan M. Alcocer-González, Víctor M. Jiménez-Pérez|2023|New J.Chem.|47|7975|doi:10.1039/D2NJ04932E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cjxmg
title: CCDC 2191006: Experimental Crystal Structure Determination

description: Related Article: Jorge González-García, Carolina Galiana, M. Auxiliadora Dea-Ayuela, Marijana Radić Stojković, Sonia López-Molina, Cristina Galiana-Roselló, Salvador Blasco, Ivo Piantanida, Enrique García-España|2023|Dalton Trans.|52|5478|doi:10.1039/D3DT00395G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2clpth
title: CCDC 2192717: Experimental Crystal Structure Determination

description: Related Article: Sheng-Suo Zhou, Jun-Hao Shen, Wen-Kai Liu, Xing-Yun Sun, Jia-Yu Song, Zheng Wang, Zheng-Hang Qi, Xing-Wang Wang|2023|Org.Chem.Front.|10|2138|doi:10.1039/D3QO00011G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d37md
title: CCDC 2207653: Experimental Crystal Structure Determination

description: Related Article: Jiafeng He, Xun-Shen Liu, Mingjia Li, Shaoting Peng, Zhi-Yao Si, Lu Liu|2023|Org.Chem.Front.|10|2198|doi:10.1039/D3QO00125C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d5qq1
title: CCDC 2210043: Experimental Crystal Structure Determination

description: Related Article: Sudhakar Dattatray Tanpure, Rahul Dadabhau Kardile, Rai-Shung Liu|2023|Org.Chem.Front.|10|2211|doi:10.1039/D3QO00134B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25810/rxtv-eb29.60
title: German Newspaper Coverage of Climate Change or Global Warming, 2004-2023 - March 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5281/zenodo.7884683
title: Allosteric activation of cell wall synthesis during bacterial growth

description: This repository contains single-molecule FRET data related to this manuscript organized by figure. Note that data that appear both in the main and in the supplementary figures are provided only once, in the relevant main figure folders. Each figure folder contains all relevant datasets, deposited as zipped folders with pre-processed raw trajectories in the .dat format. These trajectories list donor excitation/donor emission (column 1) and donor excitation/acceptor emission (column 2) values as a function of time, and can be visualized and further processed using either custom code or the publicly available ebFRET software (http://ebfret.github.io/).
DOI: 10.5281/zenodo.7884682
title: Allosteric activation of cell wall synthesis during bacterial growth

description: This repository contains single-molecule FRET data related to this manuscript organized by figure. Note that data that appear both in the main and in the supplementary figures are provided only once, in the relevant main figure folders. Each figure folder contains all relevant datasets, deposited as zipped folders with pre-processed raw trajectories in the .dat format. These trajectories list donor excitation/donor emission (column 1) and donor excitation/acceptor emission (column 2) values as a function of time, and can be visualized and further processed using either custom code or the publicly available ebFRET software (http://ebfret.github.io/).
DOI: 10.5281/zenodo.7650187
title: Dataset: Dissecting reaction mechanisms and catalytic contributions in flavoprotein fumarate reductases

description: Dataset with all stationary points (in .xyz file format) discussed in the work: Dissecting reaction mechanisms and catalytic contributions in flavoprotein fumarate reductases.
DOI: 10.5281/zenodo.7886669
title: Dataset: Dissecting reaction mechanisms and catalytic contributions in flavoprotein fumarate reductases

description: Dataset with all stationary points (in .xyz file format) and videos of the reactions discussed in the work: Dissecting reaction mechanisms and catalytic contributions in flavoprotein fumarate reductases.
DOI: 10.5281/zenodo.7650186
title: Dataset: Dissecting reaction mechanisms and catalytic contributions in flavoprotein fumarate reductases

description: Dataset with all stationary points (in xyz file format) and videos of the reactions discussed in the work: Dissecting reaction mechanisms and catalytic contributions in flavoprotein fumarate reductases.
DOI: 10.5281/zenodo.7886942
title: Dataset: Dissecting reaction mechanisms and catalytic contributions in flavoprotein fumarate reductases

description: Dataset with all stationary points (in xyz file format) and videos of the reactions discussed in the work: Dissecting reaction mechanisms and catalytic contributions in flavoprotein fumarate reductases.
DOI: 10.6084/m9.figshare.22732610
title: ASG.dta

description: Data were gathered from a population of a large university in the Southern United States. Incentives for participation included coupons for free items and a drawing for a cash prize. Additionally, the survey was advertised broadly throughout campus. A total of 5,200 students responded to an online Qualtrics survey, representing 17% of the total student population.
DOI: 10.6084/m9.figshare.22732610.v1
title: ASG.dta

description: Data were gathered from a population of a large university in the Southern United States. Incentives for participation included coupons for free items and a drawing for a cash prize. Additionally, the survey was advertised broadly throughout campus. A total of 5,200 students responded to an online Qualtrics survey, representing 17% of the total student population.