cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/9xyyw3
title: Discovery of a new species of Lacon Laporte (Coleoptera: Elateridae: Agrypninae) endemic to Cyprus, with a modified tarsal morphology

description: This dataset contains the digitized treatments in Plazi based on the original journal article Németh, Tamás, Brůha, Petr, Kundrata, Robin (2020): Discovery of a new species of Lacon Laporte (Coleoptera: Elateridae: Agrypninae) endemic to Cyprus, with a modified tarsal morphology. Zootaxa 4780 (3): 554-562, DOI: https://doi.org/10.11646/zootaxa.4780.3.7
DOI: 10.15468/enakz3
title: Mycomystes nigriventris sp. nov. (Coleoptera: Erotylidae: Tritomini) from South America, with insights into the genus Mycomystes Gorham

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pecci-Maddalena, Italo Salvatore De Castro, Lopes-Andrade, Cristiano (2020): Mycomystes nigriventris sp. nov. (Coleoptera: Erotylidae: Tritomini) from South America, with insights into the genus Mycomystes Gorham. Zootaxa 4780 (3): 579-586, DOI: https://doi.org/10.11646/zootaxa.4780.3.9
DOI: 10.15468/pfw797
title: Description of two new species of Dysidea (Porifera, Demospongiae, Dictyoceratida Dysideidae) from Tauranga Harbour, Bay of Plenty, New Zealand

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mc Cormack, Samuel P., Kelly, Michelle, Battershill, Christopher N. (2020): Description of two new species of Dysidea (Porifera, Demospongiae, Dictyoceratida Dysideidae) from Tauranga Harbour, Bay of Plenty, New Zealand. Zootaxa 4780 (3): 523-542, DOI: https://doi.org/10.11646/zootaxa.4780.3.5
DOI: 10.15468/ptc4a9
title: Holomorphology and Neotype designation of Microperla geei Chu, with egg morphology of Microperla qinlinga Chen (Plecoptera: Peltoperlidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chen, Zhi-Teng (2020): Holomorphology and Neotype designation of Microperla geei Chu, with egg morphology of Microperla qinlinga Chen (Plecoptera: Peltoperlidae). Zootaxa 4780 (3): 563-578, DOI: https://doi.org/10.11646/zootaxa.4780.3.8
DOI: 10.15468/z4xhhb
title: Notes on the genus Sarmydus Pascoe, 1867 (Cerambycidae: Prioninae: Anacolini) from India with description of a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Majumder, Amitava, Drumont, Alain, Bouyer, Thierry, Chandra, Kailash (2020): Notes on the genus Sarmydus Pascoe, 1867 (Cerambycidae: Prioninae: Anacolini) from India with description of a new species. Zootaxa 4780 (3): 543-553, DOI: https://doi.org/10.11646/zootaxa.4780.3.6
DOI: 10.5281/zenodo.3854856
title: Kraken2 Database (Human, SARS-CoV2)

description: Kraken2 Database built on human GRCH38.p13 and NCBI RefSeq genomes of SARS-CoV2 downloaded on 25.05.2020.
DOI: 10.5281/zenodo.3855682
title: JGR Atmosphere: Drought onset and termination in India

description: This is the monthly data of the Integrated Drought Index for the period of 1951-2016.
DOI: 10.5281/zenodo.3855683
title: JGR Atmosphere: Drought onset and termination in India

description: This is the monthly data of the Integrated Drought Index for the period of 1951-2016.
DOI: 10.5519/qd.lvzpeee2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (37 records)
DOI: 10.5519/qd.zw9hcbup
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (0 records)
DOI: 10.25592/uhhfdm.974
title: 3D Model of a plaster cast of Pancraticians

description: 3D Model of a plaster cast of Pancraticians
DOI: 10.25592/uhhfdm.973
title: 3D Model of a plaster cast of Pancraticians

description: 3D Model of a plaster cast of Pancraticians
DOI: 10.5281/zenodo.3856412
title: Transcription initiation peaks based on FANTOM5 CAGE data on rn6, canFam3, and galGal5

description: <strong>Overview</strong> Decomposition-based peak identification (DPI, https://github.com/hkawaji/dpi1) is applied to the FANTOM5 data of rat (rn3), dog (canFam3), and chicken (galGal5): https://fantom.gsc.riken.jp/5/datafiles/phase2.6/basic/ The same parameters to the ones used in the previous paper (Forrest ARR, Kawaji H, Rehli M, et al. Nature 507: 462–470, 2014) was used. <strong>Data files</strong> Four data files per assembly are prepared as below. tag cluster in the original definition (*.tc.bed.gz) full set of DPI peaks (*.tc.decompose_smoothing_merged.bed.gz) permissive set of DPI peaks (*.tc.decompose_smoothing_merged.ctssMaxCounts3.bed.gz) robust set of DPI peaks (*.tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.bed.gz) <strong>Acknowledgement</strong> This data set is supported by Research Grant from MEXT to RIKEN Preventive Medicine and Diagnosis Innovation Program, RIKEN Center for Integrative Medical Sciences, and JSPS KAKENHI Grant-in-Aid for Scientific Research No. 16H02902.
description: {"references": ["Decomposition-based peak identification (DPI), https://github.com/hkawaji/dpi1", "Forrest ARR, Kawaji H, Rehli M, et al. Nature 507: 462\u2013470, 2014", "Lizio M, Harshbarger J, Shimoji H, et al. Genome Biol 16: 22, 2015", "Lizio M, Harshbarger J, Abugessaisa I, et al. Nucleic Acids Res 45: D737\u2013D743, 2017", "Lizio,M., Abugessaisa,I., Noguchi,S., et al. Nucleic Acids Res 47:D752\u2013D758, 2019"]}
DOI: 10.5281/zenodo.3856413
title: Transcription initiation peaks based on FANTOM5 CAGE data on rn6, canFam3, and galGal5

description: <strong>Overview</strong> Decomposition-based peak identification (DPI, https://github.com/hkawaji/dpi1) is applied to the FANTOM5 data of rat (rn3), dog (canFam3), and chicken (galGal5): https://fantom.gsc.riken.jp/5/datafiles/phase2.6/basic/ The same parameters to the ones used in the previous paper (Forrest ARR, Kawaji H, Rehli M, et al. Nature 507: 462–470, 2014) was used. <strong>Data files</strong> Four data files per assembly are prepared as below. tag cluster in the original definition (*.tc.bed.gz) full set of DPI peaks (*.tc.decompose_smoothing_merged.bed.gz) permissive set of DPI peaks (*.tc.decompose_smoothing_merged.ctssMaxCounts3.bed.gz) robust set of DPI peaks (*.tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.bed.gz) <strong>Acknowledgement</strong> This data set is supported by Research Grant from MEXT to RIKEN Preventive Medicine and Diagnosis Innovation Program, RIKEN Center for Integrative Medical Sciences, and JSPS KAKENHI Grant-in-Aid for Scientific Research No. 16H02902.
description: {"references": ["Decomposition-based peak identification (DPI), https://github.com/hkawaji/dpi1", "Forrest ARR, Kawaji H, Rehli M, et al. Nature 507: 462\u2013470, 2014", "Lizio M, Harshbarger J, Shimoji H, et al. Genome Biol 16: 22, 2015", "Lizio M, Harshbarger J, Abugessaisa I, et al. Nucleic Acids Res 45: D737\u2013D743, 2017", "Lizio,M., Abugessaisa,I., Noguchi,S., et al. Nucleic Acids Res 47:D752\u2013D758, 2019"]}
DOI: 10.5281/zenodo.3856416
title: Test data for `rpackageutils`

description: Test data for use with `rpackageutils`, common utilities used in R modeling software packages available here: https://github.com/JGCRI/rpackageutils
DOI: 10.5281/zenodo.3856417
title: Test data for `rpackageutils`

description: Test data for use with `rpackageutils`, common utilities used in R modeling software packages available here: https://github.com/JGCRI/rpackageutils
DOI: 10.5519/qd.93vtvpzp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8966 records)
DOI: 10.6073/pasta/ced6676fcc66fb6b74d4cbcff6db2e09
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 11 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.19963217.v1
title: Anemia in chronic kidney disease in a Hospital in the Northwest region to the State of Rio Grande do Sul

description: Introduction: Chronic kidney disease (CKD) has been identified in an increasing number of patients and among its consequences is the anemia. Objective: To verify the occurrence of anemia in patients with CKD undergoing hemodialysis at a Hospital in the South Region, Brazil, as well as their kidney profile and iron profile. Methods: It was performed a retrospective, descriptive and analytical study. It was analyzed 45 patient records with results from the beginning of the hemodialysis treatment until nine months later. Results: Over 50.0% of the patients had hypertension and diabetes and 68.8% were male. The anemia was present in 97.8% of the patients and treated with erythropoietin and/or iron. In the evaluated period occurred increase in median hemoglobin levels (p &lt; 0.001), hematocrit (p &lt; 0.001), ferritin, creatinine (p &lt; 0.001) and urea under (p = 0.039). The transferrin saturation was low in 35.6% of the patients after about one year under hemodialysis treatment. There was correlation between creatinine and urea, both rising. Conclusion: After the Introduction of treatment for anemia occurred increased plasma levels of hemoglobin and clinical improvement, even though not having a complete normalization of these levels.
DOI: 10.6084/m9.figshare.19963217
title: Anemia in chronic kidney disease in a Hospital in the Northwest region to the State of Rio Grande do Sul

description: Introduction: Chronic kidney disease (CKD) has been identified in an increasing number of patients and among its consequences is the anemia. Objective: To verify the occurrence of anemia in patients with CKD undergoing hemodialysis at a Hospital in the South Region, Brazil, as well as their kidney profile and iron profile. Methods: It was performed a retrospective, descriptive and analytical study. It was analyzed 45 patient records with results from the beginning of the hemodialysis treatment until nine months later. Results: Over 50.0% of the patients had hypertension and diabetes and 68.8% were male. The anemia was present in 97.8% of the patients and treated with erythropoietin and/or iron. In the evaluated period occurred increase in median hemoglobin levels (p &lt; 0.001), hematocrit (p &lt; 0.001), ferritin, creatinine (p &lt; 0.001) and urea under (p = 0.039). The transferrin saturation was low in 35.6% of the patients after about one year under hemodialysis treatment. There was correlation between creatinine and urea, both rising. Conclusion: After the Introduction of treatment for anemia occurred increased plasma levels of hemoglobin and clinical improvement, even though not having a complete normalization of these levels.
DOI: 10.6084/m9.figshare.19963220
title: Assessment of kidney function in the elderly: a population-based study

description: Introduction: Chronic kidney disease (CKD) affects all age groups, and its prevalence has increased during recent years. CKD is divided into six stages, according to the renal function of patients: 1. Normal renal function without kidney damage; 2. Kidney damage with normal renal function; 3. Mild renal insufficiency; 4. Moderate renal insufficiency or lab tests failure; 5. Severe renal insufficiency or clinical failure; 6. End stage of chronic renal failure. Objective: This study was intended to assess renal function in elderly patients and identifying the presence of factors associated with those changes. Methods: A cross-sectional population-based study was performed. Elderly patients were surveyed between September 2010 and May 2011. Kidney function was assessed by determining of serum creatinine, and estimation of the glomerular filtration rate by the CKD-EPI equation. Results: In all, 822 elderly were surveyed; 61.6% were women; 92.2% were Causasian; and most (61.0%) were aged between 60 and 69 years. With regard to the glomerular filtration rate, 26.2% had a normal rate; 60.2% showed a slight decrease; 13.0% a moderate decrease; 0.5% severe kidney function decline; and 0.1% extreme fall. Increasing age was associated with kidney damage by decreased glomerular filtration rate (p &lt; 0.001). In addition, obesity, hypertension and smoking were factors independently associated with reduced glomerular filtration rates. Conclusion: This study found that the great majority of the surveyed elderly had some mild kidney damage, and 13.6% showed moderate to severe dysfunction.
DOI: 10.6084/m9.figshare.19963220.v1
title: Assessment of kidney function in the elderly: a population-based study

description: Introduction: Chronic kidney disease (CKD) affects all age groups, and its prevalence has increased during recent years. CKD is divided into six stages, according to the renal function of patients: 1. Normal renal function without kidney damage; 2. Kidney damage with normal renal function; 3. Mild renal insufficiency; 4. Moderate renal insufficiency or lab tests failure; 5. Severe renal insufficiency or clinical failure; 6. End stage of chronic renal failure. Objective: This study was intended to assess renal function in elderly patients and identifying the presence of factors associated with those changes. Methods: A cross-sectional population-based study was performed. Elderly patients were surveyed between September 2010 and May 2011. Kidney function was assessed by determining of serum creatinine, and estimation of the glomerular filtration rate by the CKD-EPI equation. Results: In all, 822 elderly were surveyed; 61.6% were women; 92.2% were Causasian; and most (61.0%) were aged between 60 and 69 years. With regard to the glomerular filtration rate, 26.2% had a normal rate; 60.2% showed a slight decrease; 13.0% a moderate decrease; 0.5% severe kidney function decline; and 0.1% extreme fall. Increasing age was associated with kidney damage by decreased glomerular filtration rate (p &lt; 0.001). In addition, obesity, hypertension and smoking were factors independently associated with reduced glomerular filtration rates. Conclusion: This study found that the great majority of the surveyed elderly had some mild kidney damage, and 13.6% showed moderate to severe dysfunction.
DOI: 10.6084/m9.figshare.19963221
title: Association of PTH and carotid thickness in patients with chronic kidney failure and secondary hyperparathyroidism

description: Introduction: Cardiovascular diseases (CVDs) are the leading cause of death in terminal patients with chronic kidney failure (CKF). Diverse risk factors are involved in the pathogenesis, and are classified as traditional, which affect the general population; and non-traditional, which are peculiar to patients with CKF. Secondary hyperparathyroidism, a non-traditional and common factor in CKF, can cause an increased rate of bone absorption with mobilization of calcium and phosphorus. If the product of calcium x phosphorus is increased, the solubility of this ionic pair may be exceeded and deposition of calcium phosphate in cardiac and vascular tissues occur (called metastatic calcification). Objective: To verify eventual relationship between the thickness of the common carotid artery and the levels of PTH in patients with CKF. Methods: Evaluations by Doppler ultrasonography were performed to measure the width of the carotid artery wall and to search for possible correlations between different values of PTH serum levels, mineral disturbances and traditional risk factors in the carotid changes found in individuals with dialytic CKF and secondary hyperparathyroidism. Results: Differences in the cholesterol level and age were observed in patients with signals of arterial calcification. A significant relationship was also observed between the PTH serum levels and the carotid artery wall thickness (r = 0.31, p = 0.03). Conclusion: Data from this study show the possible concomitance of traditional factors and factors related to CKF in the genesis of CVDs in uremia.
DOI: 10.6084/m9.figshare.19963221.v1
title: Association of PTH and carotid thickness in patients with chronic kidney failure and secondary hyperparathyroidism

description: Introduction: Cardiovascular diseases (CVDs) are the leading cause of death in terminal patients with chronic kidney failure (CKF). Diverse risk factors are involved in the pathogenesis, and are classified as traditional, which affect the general population; and non-traditional, which are peculiar to patients with CKF. Secondary hyperparathyroidism, a non-traditional and common factor in CKF, can cause an increased rate of bone absorption with mobilization of calcium and phosphorus. If the product of calcium x phosphorus is increased, the solubility of this ionic pair may be exceeded and deposition of calcium phosphate in cardiac and vascular tissues occur (called metastatic calcification). Objective: To verify eventual relationship between the thickness of the common carotid artery and the levels of PTH in patients with CKF. Methods: Evaluations by Doppler ultrasonography were performed to measure the width of the carotid artery wall and to search for possible correlations between different values of PTH serum levels, mineral disturbances and traditional risk factors in the carotid changes found in individuals with dialytic CKF and secondary hyperparathyroidism. Results: Differences in the cholesterol level and age were observed in patients with signals of arterial calcification. A significant relationship was also observed between the PTH serum levels and the carotid artery wall thickness (r = 0.31, p = 0.03). Conclusion: Data from this study show the possible concomitance of traditional factors and factors related to CKF in the genesis of CVDs in uremia.
DOI: 10.6084/m9.figshare.19963226.v1
title: Association between work, income and quality of life of kidney transplant recipient the municipality of Teresina, PI, Brazil

description: Introduction: Evaluate the quality of life of kidney transplant recipients has been a way to determine the impact of transplantation in health care and subsequent treatment of chronic character. Objective: To analyze the association between income, work and quality of life of kidney transplant recipients. Methods: The sample consisted of 147 people, with an average of 74.3 months of realization of the transplantation. Data was collected using the following methods: socioeconomic assessment tool and the Medical Outcome Study 36 - Item Short - Form Health Survey, validated for use in Brazil. A bivariate analysis was performed using the Mann-Whitney's U test. Results: The average quality of life related to health for the physical component was 63.8 (SD = 29.4), and for the mental component, 65.6 (SD = 29.2). The bivariate analysis showed that the exercise of labor activity and family income higher than three minimum wages were significantly associated with a better quality of life. Conclusion: Labor activities are significant for kidney transplant recipients and special attention must be given by the multidisciplinary team in the search for strategies that promote and encourage their maintenance and reintegration into the labor market.
DOI: 10.6084/m9.figshare.19963226
title: Association between work, income and quality of life of kidney transplant recipient the municipality of Teresina, PI, Brazil

description: Introduction: Evaluate the quality of life of kidney transplant recipients has been a way to determine the impact of transplantation in health care and subsequent treatment of chronic character. Objective: To analyze the association between income, work and quality of life of kidney transplant recipients. Methods: The sample consisted of 147 people, with an average of 74.3 months of realization of the transplantation. Data was collected using the following methods: socioeconomic assessment tool and the Medical Outcome Study 36 - Item Short - Form Health Survey, validated for use in Brazil. A bivariate analysis was performed using the Mann-Whitney's U test. Results: The average quality of life related to health for the physical component was 63.8 (SD = 29.4), and for the mental component, 65.6 (SD = 29.2). The bivariate analysis showed that the exercise of labor activity and family income higher than three minimum wages were significantly associated with a better quality of life. Conclusion: Labor activities are significant for kidney transplant recipients and special attention must be given by the multidisciplinary team in the search for strategies that promote and encourage their maintenance and reintegration into the labor market.
DOI: 10.6084/m9.figshare.19963229
title: Prevention of contrast induced nephropathy with sodium bicarbonate (the PROMEC study)

description: Introduction: Contrast-induced nephropathy is a common complication of radiographic procedures. Different measures have been used to avoid this damage, but the evidence is controversial. New investigations are required to clarify it. We investigated the efficacy and safety of sodium bicarbonate solution compared with sodium chloride solution to prevent contrast induced nephropathy in patients with or at risk of renal dysfunction. Methods: A prospective, single-center, randomized clinical trial conducted from May 1, 2007 to February 8, 2008. Inpatients in a tertiary center, scheduled to undergo a procedure with the nonionic radiographic contrast agent iohexol. There were 220 patients with serum creatinine levels of at least 1.2 mg/dL (106.1 µmol/L) and/or type 2 diabetics, who were randomized to receive an infusion of sodium chloride (n = 113) or sodium bicarbonate (n = 107) before and after contrast dye administration. The intervention were "A" group received 1 ml/kg/hour of normal saline solution, starting 12 hours before and continuing 12 hours after iohexol contrast. "B" group received 3 ml/kg of sodium bicarbonate solution (150 mEq/L) one hour prior to procedure and then drip rate was decreased to 1 ml/kg/hour until 6 hours post procedure. Our main outcome measure was change in serum creatinine. Results: The mean creatinine value after the procedure was 1.26 mg/dL in the saline group and 1.22 mg/dL in the bicarbonate group (mean difference: 0.036; CI 95%: -0.16 to 0.23, p = 0.865). The diagnosis of contrast-induced nephropathy, defined by increase in serum creatinine on 25% or more within 2 days after administration of radiographic contrast, was done in twelve patients (12%) in the bicarbonate group and eighth patients (7.1%) in the saline group (RR: 1.68, CI 95%: 0.72 to 3.94). Conclusion: Our investigation showed that there were no differences between normal saline solution (extended infusion) vs. bicarbonate solution for nephroprotection.