cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6066449
title: AllData_EcologyLetters_Figshare_v1_3-18.csv

description: Stomatal conductance dataset for Anderegg et al. (2018), Ecology Letters. Please contact William Anderegg (anderegg@utah.edu) if you have any questions. <br>
DOI: 10.6084/m9.figshare.6066224
title: QALD7-Training NSpM Query Templates

description: This dataset contains the QALD7-training dataset converted to Neural SPARQL Machine (NSpM) templates to Question-Answering (QA) over DBpedia Knowledgebase.
DOI: 10.6084/m9.figshare.6066224.v2
title: QALD7-Training NSpM Query Templates

description: This dataset contains the QALD7-training dataset converted to Neural SPARQL Machine (NSpM) templates to Question-Answering (QA) over DBpedia Knowledgebase.
DOI: 10.6084/m9.figshare.6066224.v1
title: QALD7 NSpM Query Templates

description: This dataset contains the QALD7-training dataset converted to Neural SPARQL Machine (NSpM) templates to Question-Answering (QA) over DBpedia Knowledgebase.
DOI: 10.6084/m9.figshare.6066197
title: LC-QuaD NSpM Query Templates

description: This dataset contains LC-QuAD questions converted to NSpM templates for Question-Answering (QA) over DBpedia Knowledgebase.
DOI: 10.6084/m9.figshare.6066197.v2
title: LC-QuaD NSpM Query Templates

description: This dataset contains LC-QuAD questions converted to NSpM templates for Question-Answering (QA) over DBpedia Knowledgebase.
DOI: 10.6084/m9.figshare.6066197.v1
title: NSpM Query Templates - LC-Quad with Categories.csv

description: This dataset contains LC-QuAD questions converted to NSpM templates for Question-Answering (QA) over DBpedia Knowledgebase.
DOI: 10.6084/m9.figshare.6066179
title: Supplemental Material by Freitas et al., 2018. Next-generation sequencing of the complete mitochondrial genome of the endangered species Black Lion Tamarin Leontopithecus chrysopygus (Primates) and mitogenomic phylogeny focusing on the Callitrichidae family. G3 Genes Genomes Genetics.

description: Figure S1 contains the quartiles for the distribution of fragment lengths for the mitochondrial genome assembly; Figure S2 contains the ilustration for the tRNA mitochondrial; Figure S3 contains the full phylogenetic tree, using Maximum Likelihood for 124 primates and three outgroup species; and Table S1 contains the list of the GenBank accession numbers for the complete mitochondrial genome sequences previously published by different authors and used in our phylogenetic analysis. Details of the methodology employed to perform the mitogenome assembly, and NUMTs and heteroplasmy searching are described in the Appendix S1. To reference these data, please cite Freitas et al., 2018 from G3 Journal.
DOI: 10.6084/m9.figshare.6066179.v1
title: Supplemental Material by Freitas et al., 2018. Next-generation sequencing of the complete mitochondrial genome of the endangered species Black Lion Tamarin Leontopithecus chrysopygus (Primates) and mitogenomic phylogeny focusing on the Callitrichidae family. G3 Genes Genomes Genetics.

description: Figure S1 contains the quartiles for the distribution of fragment lengths for the mitochondrial genome assembly; Figure S2 contains the ilustration for the tRNA mitochondrial; Figure S3 contains the full phylogenetic tree, using Maximum Likelihood for 124 primates and three outgroup species; and Table S1 contains the list of the GenBank accession numbers for the complete mitochondrial genome sequences previously published by different authors and used in our phylogenetic analysis. Details of the methodology employed to perform the mitogenome assembly, and NUMTs and heteroplasmy searching are described in the Appendix S1. To reference these data, please cite Freitas et al., 2018 from G3 Journal.
DOI: 10.6084/m9.figshare.6063332
title: Sex ratios of offspring produced by Spiroplasma-infected 2016 females crossed with 2011 males (outbred) or 2016 males (inbred) from Rapid comeback of males: evolution of male-killer suppression in a green lacewing population

description: Evolutionary theory predicts that the spread of cytoplasmic sex ratio distorters leads to the evolution of host nuclear suppressors, although there are extremely few empirical observations of this phenomenon. Here, we demonstrate that a nuclear suppressor of a cytoplasmic male killer has spread rapidly in a population of the green lacewing <i>Mallada desjardinsi</i>. An <i>M. desjardinsi</i> population, which was strongly female-biased in 2011 because of a high prevalence of the male-killing <i>Spiroplasma</i> endosymbiont, had a sex ratio near parity in 2016, despite a consistent <i>Spiroplasma</i> prevalence. Most of the offspring derived from individuals collected in 2016 had 1 : 1 sex ratios in subsequent generations. Contrastingly, all-female or female-biased broods appeared frequently from crossings of these female offspring with males derived from a laboratory line founded by individuals collected in 2011. These results suggest near-fixation of a nuclear suppressor against male killing in 2016 and reject the notion that a non-male-killing <i>Spiroplasma</i> variant has spread in the population. Consistently, no significant difference was detected in mitochondrial haplotype variation between 2011 and 2016. These findings, and earlier findings in the butterfly <i>Hypolimnas bolina</i> in Samoa, suggest that these quick events of male recovery occur more commonly than is generally appreciated.
DOI: 10.6084/m9.figshare.6063332.v1
title: Sex ratios of offspring produced by Spiroplasma-infected 2016 females crossed with 2011 males (outbred) or 2016 males (inbred) from Rapid comeback of males: evolution of male-killer suppression in a green lacewing population

description: Evolutionary theory predicts that the spread of cytoplasmic sex ratio distorters leads to the evolution of host nuclear suppressors, although there are extremely few empirical observations of this phenomenon. Here, we demonstrate that a nuclear suppressor of a cytoplasmic male killer has spread rapidly in a population of the green lacewing <i>Mallada desjardinsi</i>. An <i>M. desjardinsi</i> population, which was strongly female-biased in 2011 because of a high prevalence of the male-killing <i>Spiroplasma</i> endosymbiont, had a sex ratio near parity in 2016, despite a consistent <i>Spiroplasma</i> prevalence. Most of the offspring derived from individuals collected in 2016 had 1 : 1 sex ratios in subsequent generations. Contrastingly, all-female or female-biased broods appeared frequently from crossings of these female offspring with males derived from a laboratory line founded by individuals collected in 2011. These results suggest near-fixation of a nuclear suppressor against male killing in 2016 and reject the notion that a non-male-killing <i>Spiroplasma</i> variant has spread in the population. Consistently, no significant difference was detected in mitochondrial haplotype variation between 2011 and 2016. These findings, and earlier findings in the butterfly <i>Hypolimnas bolina</i> in Samoa, suggest that these quick events of male recovery occur more commonly than is generally appreciated.
DOI: 10.6084/m9.figshare.6063326
title: Infection status of females collected in 2011 and 2016, and sex ratios of their offspring from Rapid comeback of males: evolution of male-killer suppression in a green lacewing population

description: Evolutionary theory predicts that the spread of cytoplasmic sex ratio distorters leads to the evolution of host nuclear suppressors, although there are extremely few empirical observations of this phenomenon. Here, we demonstrate that a nuclear suppressor of a cytoplasmic male killer has spread rapidly in a population of the green lacewing <i>Mallada desjardinsi</i>. An <i>M. desjardinsi</i> population, which was strongly female-biased in 2011 because of a high prevalence of the male-killing <i>Spiroplasma</i> endosymbiont, had a sex ratio near parity in 2016, despite a consistent <i>Spiroplasma</i> prevalence. Most of the offspring derived from individuals collected in 2016 had 1 : 1 sex ratios in subsequent generations. Contrastingly, all-female or female-biased broods appeared frequently from crossings of these female offspring with males derived from a laboratory line founded by individuals collected in 2011. These results suggest near-fixation of a nuclear suppressor against male killing in 2016 and reject the notion that a non-male-killing <i>Spiroplasma</i> variant has spread in the population. Consistently, no significant difference was detected in mitochondrial haplotype variation between 2011 and 2016. These findings, and earlier findings in the butterfly <i>Hypolimnas bolina</i> in Samoa, suggest that these quick events of male recovery occur more commonly than is generally appreciated.
DOI: 10.6084/m9.figshare.6063326.v1
title: Infection status of females collected in 2011 and 2016, and sex ratios of their offspring from Rapid comeback of males: evolution of male-killer suppression in a green lacewing population

description: Evolutionary theory predicts that the spread of cytoplasmic sex ratio distorters leads to the evolution of host nuclear suppressors, although there are extremely few empirical observations of this phenomenon. Here, we demonstrate that a nuclear suppressor of a cytoplasmic male killer has spread rapidly in a population of the green lacewing <i>Mallada desjardinsi</i>. An <i>M. desjardinsi</i> population, which was strongly female-biased in 2011 because of a high prevalence of the male-killing <i>Spiroplasma</i> endosymbiont, had a sex ratio near parity in 2016, despite a consistent <i>Spiroplasma</i> prevalence. Most of the offspring derived from individuals collected in 2016 had 1 : 1 sex ratios in subsequent generations. Contrastingly, all-female or female-biased broods appeared frequently from crossings of these female offspring with males derived from a laboratory line founded by individuals collected in 2011. These results suggest near-fixation of a nuclear suppressor against male killing in 2016 and reject the notion that a non-male-killing <i>Spiroplasma</i> variant has spread in the population. Consistently, no significant difference was detected in mitochondrial haplotype variation between 2011 and 2016. These findings, and earlier findings in the butterfly <i>Hypolimnas bolina</i> in Samoa, suggest that these quick events of male recovery occur more commonly than is generally appreciated.
DOI: 10.6084/m9.figshare.6063320
title: Estimation of voltinism in the green lacewing Mallada desjardinsi in Matsudo from Rapid comeback of males: evolution of male-killer suppression in a green lacewing population

description: Evolutionary theory predicts that the spread of cytoplasmic sex ratio distorters leads to the evolution of host nuclear suppressors, although there are extremely few empirical observations of this phenomenon. Here, we demonstrate that a nuclear suppressor of a cytoplasmic male killer has spread rapidly in a population of the green lacewing <i>Mallada desjardinsi</i>. An <i>M. desjardinsi</i> population, which was strongly female-biased in 2011 because of a high prevalence of the male-killing <i>Spiroplasma</i> endosymbiont, had a sex ratio near parity in 2016, despite a consistent <i>Spiroplasma</i> prevalence. Most of the offspring derived from individuals collected in 2016 had 1 : 1 sex ratios in subsequent generations. Contrastingly, all-female or female-biased broods appeared frequently from crossings of these female offspring with males derived from a laboratory line founded by individuals collected in 2011. These results suggest near-fixation of a nuclear suppressor against male killing in 2016 and reject the notion that a non-male-killing <i>Spiroplasma</i> variant has spread in the population. Consistently, no significant difference was detected in mitochondrial haplotype variation between 2011 and 2016. These findings, and earlier findings in the butterfly <i>Hypolimnas bolina</i> in Samoa, suggest that these quick events of male recovery occur more commonly than is generally appreciated.
DOI: 10.6084/m9.figshare.6063320.v1
title: Estimation of voltinism in the green lacewing Mallada desjardinsi in Matsudo from Rapid comeback of males: evolution of male-killer suppression in a green lacewing population

description: Evolutionary theory predicts that the spread of cytoplasmic sex ratio distorters leads to the evolution of host nuclear suppressors, although there are extremely few empirical observations of this phenomenon. Here, we demonstrate that a nuclear suppressor of a cytoplasmic male killer has spread rapidly in a population of the green lacewing <i>Mallada desjardinsi</i>. An <i>M. desjardinsi</i> population, which was strongly female-biased in 2011 because of a high prevalence of the male-killing <i>Spiroplasma</i> endosymbiont, had a sex ratio near parity in 2016, despite a consistent <i>Spiroplasma</i> prevalence. Most of the offspring derived from individuals collected in 2016 had 1 : 1 sex ratios in subsequent generations. Contrastingly, all-female or female-biased broods appeared frequently from crossings of these female offspring with males derived from a laboratory line founded by individuals collected in 2011. These results suggest near-fixation of a nuclear suppressor against male killing in 2016 and reject the notion that a non-male-killing <i>Spiroplasma</i> variant has spread in the population. Consistently, no significant difference was detected in mitochondrial haplotype variation between 2011 and 2016. These findings, and earlier findings in the butterfly <i>Hypolimnas bolina</i> in Samoa, suggest that these quick events of male recovery occur more commonly than is generally appreciated.
DOI: 10.6084/m9.figshare.6063311
title: Mitochondrial haplotypes and Spiroplasma infection status of females collected in 2011 and 2016 from Rapid comeback of males: evolution of male-killer suppression in a green lacewing population

description: Evolutionary theory predicts that the spread of cytoplasmic sex ratio distorters leads to the evolution of host nuclear suppressors, although there are extremely few empirical observations of this phenomenon. Here, we demonstrate that a nuclear suppressor of a cytoplasmic male killer has spread rapidly in a population of the green lacewing <i>Mallada desjardinsi</i>. An <i>M. desjardinsi</i> population, which was strongly female-biased in 2011 because of a high prevalence of the male-killing <i>Spiroplasma</i> endosymbiont, had a sex ratio near parity in 2016, despite a consistent <i>Spiroplasma</i> prevalence. Most of the offspring derived from individuals collected in 2016 had 1 : 1 sex ratios in subsequent generations. Contrastingly, all-female or female-biased broods appeared frequently from crossings of these female offspring with males derived from a laboratory line founded by individuals collected in 2011. These results suggest near-fixation of a nuclear suppressor against male killing in 2016 and reject the notion that a non-male-killing <i>Spiroplasma</i> variant has spread in the population. Consistently, no significant difference was detected in mitochondrial haplotype variation between 2011 and 2016. These findings, and earlier findings in the butterfly <i>Hypolimnas bolina</i> in Samoa, suggest that these quick events of male recovery occur more commonly than is generally appreciated.
DOI: 10.6084/m9.figshare.6063311.v1
title: Mitochondrial haplotypes and Spiroplasma infection status of females collected in 2011 and 2016 from Rapid comeback of males: evolution of male-killer suppression in a green lacewing population

description: Evolutionary theory predicts that the spread of cytoplasmic sex ratio distorters leads to the evolution of host nuclear suppressors, although there are extremely few empirical observations of this phenomenon. Here, we demonstrate that a nuclear suppressor of a cytoplasmic male killer has spread rapidly in a population of the green lacewing <i>Mallada desjardinsi</i>. An <i>M. desjardinsi</i> population, which was strongly female-biased in 2011 because of a high prevalence of the male-killing <i>Spiroplasma</i> endosymbiont, had a sex ratio near parity in 2016, despite a consistent <i>Spiroplasma</i> prevalence. Most of the offspring derived from individuals collected in 2016 had 1 : 1 sex ratios in subsequent generations. Contrastingly, all-female or female-biased broods appeared frequently from crossings of these female offspring with males derived from a laboratory line founded by individuals collected in 2011. These results suggest near-fixation of a nuclear suppressor against male killing in 2016 and reject the notion that a non-male-killing <i>Spiroplasma</i> variant has spread in the population. Consistently, no significant difference was detected in mitochondrial haplotype variation between 2011 and 2016. These findings, and earlier findings in the butterfly <i>Hypolimnas bolina</i> in Samoa, suggest that these quick events of male recovery occur more commonly than is generally appreciated.
DOI: 10.6084/m9.figshare.6063299
title: Tsai and Fordyce 2017 Toipahautea Dec31.nex from A new archaic baleen whale, <i>Toipahautea waitaki</i> (early-Late Oligocene, New Zealand) and the origins of crown Mysticeti

description: Nexus file to show character and taxon lists.
DOI: 10.6084/m9.figshare.6063299.v1
title: Tsai and Fordyce 2017 Toipahautea Dec31.nex from A new archaic baleen whale, <i>Toipahautea waitaki</i> (early-Late Oligocene, New Zealand) and the origins of crown Mysticeti

description: Nexus file to show character and taxon lists.
DOI: 10.6084/m9.figshare.6063296
title: Supplementary Data S6 from <i>Sost</i> deficiency leads to reduced mechanical strains at the tibia midshaft in strain-matched <i>in vivo</i> loading experiments in mice

description: Sclerostin, a product of the <i>Sost</i> gene, is a Wnt-inhibitor and thus negatively regulates bone accrual. Canonical Wnt/β-catenin signalling is also known to be activated in mechanotransduction. Sclerostin neutralizing antibodies are being tested in ongoing clinical trials to target osteoporosis and osteogenesis imperfecta but their interaction with mechanical stimuli on bone formation remains unclear. <i>Sost</i> knockout (KO) mice were examined to gain insight on how long-term <i>Sost</i> deficiency alters the local mechanical environment within the bone. This knowledge is crucial since the strain environment regulates bone adaptation. We characterized the bone geometry at the tibial midshaft of young and adult <i>Sost</i> KO and age-matched littermate control (LC) mice using microcomputed tomography imaging. The cortical area and the minimal and maximal moment of inertia were higher in <i>Sost</i> KO than in LC mice, whereas no difference was detected in either the anterior–posterior or medio-lateral bone curvature. Differences observed between age-matched genotypes were greater in adult mice. We analysed the local mechanical environment in the bone using finite-element models (FEMs), which showed that strains in the tibiae of <i>Sost</i> KO mice are lower than in age-matched LC mice at the diaphyseal midshaft, a region commonly used to assess cortical bone formation and resorption. Our FEMs also suggested that tissue mineral density is only a minor contributor to the strain distribution in tibial cortical bone from <i>Sost</i> KO mice compared to bone geometry. Furthermore, they indicated that although strain gauging experiments matched strains at the gauge site, strains along the tibial length were not comparable between age-matched <i>Sost</i> KO and LC mice or between young and adult animals within the same genotype.
DOI: 10.6084/m9.figshare.6063296.v1
title: Supplementary Data S6 from <i>Sost</i> deficiency leads to reduced mechanical strains at the tibia midshaft in strain-matched <i>in vivo</i> loading experiments in mice

description: Sclerostin, a product of the <i>Sost</i> gene, is a Wnt-inhibitor and thus negatively regulates bone accrual. Canonical Wnt/β-catenin signalling is also known to be activated in mechanotransduction. Sclerostin neutralizing antibodies are being tested in ongoing clinical trials to target osteoporosis and osteogenesis imperfecta but their interaction with mechanical stimuli on bone formation remains unclear. <i>Sost</i> knockout (KO) mice were examined to gain insight on how long-term <i>Sost</i> deficiency alters the local mechanical environment within the bone. This knowledge is crucial since the strain environment regulates bone adaptation. We characterized the bone geometry at the tibial midshaft of young and adult <i>Sost</i> KO and age-matched littermate control (LC) mice using microcomputed tomography imaging. The cortical area and the minimal and maximal moment of inertia were higher in <i>Sost</i> KO than in LC mice, whereas no difference was detected in either the anterior–posterior or medio-lateral bone curvature. Differences observed between age-matched genotypes were greater in adult mice. We analysed the local mechanical environment in the bone using finite-element models (FEMs), which showed that strains in the tibiae of <i>Sost</i> KO mice are lower than in age-matched LC mice at the diaphyseal midshaft, a region commonly used to assess cortical bone formation and resorption. Our FEMs also suggested that tissue mineral density is only a minor contributor to the strain distribution in tibial cortical bone from <i>Sost</i> KO mice compared to bone geometry. Furthermore, they indicated that although strain gauging experiments matched strains at the gauge site, strains along the tibial length were not comparable between age-matched <i>Sost</i> KO and LC mice or between young and adult animals within the same genotype.
DOI: 10.6084/m9.figshare.6063293
title: Tsai and Fordyce 2017 Toipahautea Dec31.tnt from A new archaic baleen whale, <i>Toipahautea waitaki</i> (early-Late Oligocene, New Zealand) and the origins of crown Mysticeti

description: TNT file for running the phylogenetic analysis.
DOI: 10.6084/m9.figshare.6063293.v1
title: Tsai and Fordyce 2017 Toipahautea Dec31.tnt from A new archaic baleen whale, <i>Toipahautea waitaki</i> (early-Late Oligocene, New Zealand) and the origins of crown Mysticeti

description: TNT file for running the phylogenetic analysis.
DOI: 10.6084/m9.figshare.6063053
title: Dissertation Results Figures

description: Plotted deterministic flux slices from work towards "Advanced Quadrature Selection for Monte Carlo Variance Reduction", a dissertation submitted by Kelly L. Rowland in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Nuclear Engineering and the Designated Emphasis in Computational and Data Science and Engineering at UC Berkeley.
DOI: 10.6084/m9.figshare.6063053.v1
title: Dissertation Results Figures

description: Plotted deterministic flux slices from work towards "Advanced Quadrature Selection for Monte Carlo Variance Reduction", a dissertation submitted by Kelly L. Rowland in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Nuclear Engineering and the Designated Emphasis in Computational and Data Science and Engineering at UC Berkeley.
DOI: 10.6084/m9.figshare.6063032
title: Data from Gopko M, Chowdhury M, Taskinen J (2018) Interactions between two common parasites in brown trout (Salmo trutta): consequences of pre-infection.

description: Two data files (csv) and one text file with the description of the variables.<br>In brief, our research concerned the influence of pre-infection with one parasitic species on the success of subsequent infections. We infected brown trout with glochidia of the freshwater pearl mussel and then with <i>D. pseudospathaceum</i> cercariae under controlled laboratory conditions and vice versa in the reverse order.