cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14302872.v1
title: Additional file 2 of Factors associated with hypertriglyceridemia among the hill tribe people aged 30 years and over, Thailand: a cross-sectional study

description: Additional file 2.
DOI: 10.6084/m9.figshare.14302830.v1
title: Additional file 9 of Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations

description: Additional file 9: Table S1 An overview of the clinical characteristics in all cardiac samples
DOI: 10.6084/m9.figshare.14302803.v1
title: Additional file 18 of Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations

description: Additional file 18: Table S10 A published transcriptome data comparing genome-engineered cardiomyocytes with and without mutated MYBPC3 using RNA sequencing
DOI: 10.6084/m9.figshare.14302800.v1
title: Additional file 17 of Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations

description: Additional file 17: Table S9 The acetylation and mRNA expression levels of included cell-type-specific markers
DOI: 10.6084/m9.figshare.14302797.v1
title: Additional file 16 of Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations

description: Additional file 16: Table S8 Gene sets collected from the Molecular Signature Databases
DOI: 10.6084/m9.figshare.14302794.v1
title: Additional file 15 of Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations

description: Additional file 15: Table S7 Enrichment results of identified transcription factors that were supported by both ChIP-seq and RNA-seq data in HCM versus control hearts
DOI: 10.6084/m9.figshare.14302791.v1
title: Additional file 14 of Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations

description: Additional file 14: Table S6 (A) The overlapping genes between differentially expressed genes using DESeq2 and the top 2,000 genes that discriminate HCM from control hearts using O2PLS. (B) Enriched GO terms and pathways by the overlapping genes. (C) Enriched GO terms and pathways by a subset of the overlapping genes, which showed the same changing direction at their protein levels in HCM hearts when compared with controls
DOI: 10.6084/m9.figshare.14302788.v1
title: Additional file 13 of Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations

description: Additional file 13: Table S5 (A) Unsupervised analysis (O2PLS) ranking DNA regions that contributed to the separation between HCM and control hearts. (B) Unsupervised analysis (O2PLS) ranking genes that contributed to the separation between HCM and control hearts
DOI: 10.6084/m9.figshare.14302785.v1
title: Additional file 12 of Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations

description: Additional file 12: Table S4 (A) Differentially expressed proteins between HCM and control hearts from the proteomics data. (B) Enriched GO terms and pathways by up-regulated proteins in HCM versus control hearts. (C) Enriched GO terms and pathways by down-regulated proteins in HCM versus control hearts
DOI: 10.6084/m9.figshare.14302782.v1
title: Additional file 11 of Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations

description: Additional file 11: Table S3 (A) Differentially expressed genes between HCM and control hearts from the RNA-seq data. (B) Enriched GO terms and pathways by up-regulated genes in HCM versus control hearts. (C) Enriched GO terms and pathways by down-regulated genes in HCM versus control hearts
DOI: 10.6084/m9.figshare.14302779.v1
title: Additional file 10 of Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations

description: Additional file 10: Table S2 (A) Differentially acetylated regions between HCM and control hearts from the H3K27ac ChIP-seq data. (B) Genes annotated to differentially acetylated regions using the 5 kb window of the transcription start site. (C) Genes annotated to differentially acetylated regions using the 50 kb window of the transcription start site. (D) Enriched GO terms and pathways by genes annotated to the hyperacetylated regions (50 kb window). (E) Enriched GO terms and pathways by genes annotated to the hypoacetylated regions (50 kb window)
DOI: 10.6084/m9.figshare.14302680.v1
title: Additional file 9 of Circulating tumor cells and palbociclib treatment in patients with ER-positive, HER2-negative advanced breast cancer: results from a translational sub-study of the TREnd trial

description: Additional file 9: Table S3. Patients’ number of CTCs isolated by CellSearch.
DOI: 10.6084/m9.figshare.14302677.v1
title: Additional file 8 of Circulating tumor cells and palbociclib treatment in patients with ER-positive, HER2-negative advanced breast cancer: results from a translational sub-study of the TREnd trial

description: Additional file 8: Table S2. Patients characteristics of c-TREnd cohort, according to treatment arms.
DOI: 10.6084/m9.figshare.12058890.v1
title: Data from: An exotic magnet plant alters pollinator abundance and behavior: a field test with a native mistletoe

description: Original data from: Cuadra-Valdés, J., J. Vizentin-Bugoni & F.E. Fontúrbel (2021) An exotic magnet plant alters pollinator abundance and behavior: a field test with a native mistletoe. Biological Invasions.
DOI: 10.6084/m9.figshare.14302674.v1
title: Additional file 7 of Circulating tumor cells and palbociclib treatment in patients with ER-positive, HER2-negative advanced breast cancer: results from a translational sub-study of the TREnd trial

description: Additional file 7: Table S1. Comparison between baseline patient characteristics of the c-TREnd subpopulation and overall TREnd population.
DOI: 10.6084/m9.figshare.12058890
title: Data from: An exotic magnet plant alters pollinator abundance and behavior: a field test with a native mistletoe

description: Original data from: Cuadra-Valdés, J., J. Vizentin-Bugoni & F.E. Fontúrbel (2021) An exotic magnet plant alters pollinator abundance and behavior: a field test with a native mistletoe. Biological Invasions.
DOI: 10.6084/m9.figshare.14302653.v1
title: Additional file 14 of Circulating tumor cells and palbociclib treatment in patients with ER-positive, HER2-negative advanced breast cancer: results from a translational sub-study of the TREnd trial

description: Additional file 14: Table S8. PFS of patients with RB1 positive CTC.
DOI: 10.6084/m9.figshare.14302650.v1
title: Additional file 13 of Circulating tumor cells and palbociclib treatment in patients with ER-positive, HER2-negative advanced breast cancer: results from a translational sub-study of the TREnd trial

description: Additional file 13: Table S7. RB1 and GAPDH copy number per patient per timepoint.
DOI: 10.6084/m9.figshare.14302647.v1
title: Additional file 12 of Circulating tumor cells and palbociclib treatment in patients with ER-positive, HER2-negative advanced breast cancer: results from a translational sub-study of the TREnd trial

description: Additional file 12: Table S6. Number of CTCs sorted by DEPArray system.
DOI: 10.6084/m9.figshare.14302644.v1
title: Additional file 11 of Circulating tumor cells and palbociclib treatment in patients with ER-positive, HER2-negative advanced breast cancer: results from a translational sub-study of the TREnd trial

description: Additional file 11: Table S5. Associations between clinical benefit and CTCs number count.
DOI: 10.6084/m9.figshare.14302641.v1
title: Additional file 10 of Circulating tumor cells and palbociclib treatment in patients with ER-positive, HER2-negative advanced breast cancer: results from a translational sub-study of the TREnd trial

description: Additional file 10: Table S4. Patients characteristics according to baseline CTCs number count.
DOI: 10.6084/m9.figshare.14302626.v1
title: Additional file 1 of Consumer Assessment of Healthcare Providers and Systems (CAHPS®) survey of experiences with ambulatory healthcare for Asians and non-Hispanic Whites in the United States

description: Additional file 1: Online Supplemental Material Table 1. Recycled predictions from main effects only model and the model with the interaction terms. Online Supplemental Material Table 2. Generalized ordinal logistic regression. Online Supplemental Material Figure 1. Three-factor model.
DOI: 10.6084/m9.figshare.14302614.v1
title: Additional file 7 of Mitochondrial genotype alters the impact of rapamycin on the transcriptional response to nutrients in Drosophila

description: Additional file 7: Table S7. RT-qPCR Results. (A) Table with gene targets and primer sequences used. (B) Table of Ct values for genes used in the time course validation. Transcript abundance was measured for four genes that displayed a significant difference in expression between the sm21;OreR samples treated for 1 hour with rapamycin and those treated for 4 hours. The table contains the gene symbol, flybase gene id, sample condition, biological replicate number, Ct (mean of technical replicates) and the read counts per million detected for the transcript in the RNAseq experiment.
DOI: 10.6084/m9.figshare.14302611.v1
title: Additional file 6 of Mitochondrial genotype alters the impact of rapamycin on the transcriptional response to nutrients in Drosophila

description: Additional file 6: Table S6. (A-B). Transcription factor binding motif analysis. Output file for genes in cluster 1 (A) or cluster 5 (B) from Rcis-Target that includes the enrichment score data for transcription factors and the associated genes.
DOI: 10.6084/m9.figshare.14302608.v1
title: Additional file 5 of Mitochondrial genotype alters the impact of rapamycin on the transcriptional response to nutrients in Drosophila

description: Additional file 5: Table S5. Gene ontology and KEGG pathway enrichment analysis. Output file from the GO term and KEGG pathway enrichment analysis for specified gene sets. The file has the output files for the following analyses in tabs A-H: (A-B) Output file from the GO term (A) and KEGG pathway (B) enrichment analysis of genes found significantly different response profiles between the OreR;OreR and sm21;OreR control treatment time courses. (C-D) Output file from the GO term (C) and KEGG pathway (D) enrichment analysis of genes found significantly different response profiles between the OreR;OreR and sm21;OreR Rapamycin treatment time courses. (E-F) Output file from the GO term (E) and KEGG pathway (F) enrichment analysis of genes found in the cluster 1 gene set. (G-H) Output file from the GO term (G) and KEGG pathway (H) enrichment analysis of genes found in the cluster 5 gene set.
DOI: 10.6084/m9.figshare.14302605.v1
title: Additional file 4 of Mitochondrial genotype alters the impact of rapamycin on the transcriptional response to nutrients in Drosophila

description: Additional file 4: Table S4. MBCluster.seq heatmap data and cluster assignment. Output file from the model-based clustering generated by MBCluster.seq including the relative expression used for the heatmap and cluster assignment for individual genes.
DOI: 10.6084/m9.figshare.14302602.v1
title: Additional file 3 of Mitochondrial genotype alters the impact of rapamycin on the transcriptional response to nutrients in Drosophila

description: Additional file 3: Table S3. (A-H). Longitudinal time course differential expression analysis. ImpulseDE2 analysis output for individual time courses and comparisons between time courses. The file has the time course condition(s) that were analyzed denoted in the tab name.
DOI: 10.6084/m9.figshare.14302599.v1
title: Additional file 2 of Mitochondrial genotype alters the impact of rapamycin on the transcriptional response to nutrients in Drosophila

description: Additional file 2: Table S2. (A-L). Individual time point differential expression analysis. Output files from the edgeR analysis of individual contrasts between refed conditions and starved state. The file contains the specific contrast in the tab name.
DOI: 10.6084/m9.figshare.14302596.v1
title: Additional file 1 of Mitochondrial genotype alters the impact of rapamycin on the transcriptional response to nutrients in Drosophila

description: Additional file 1: Table S1. Count table. Read count data before normalization.
DOI: 10.6084/m9.figshare.14282882.v1
title: “US FOR OURSELVES”: ENREGISTERING AND DE-ESCALATING CORONAVIRUS UNDER NERVOUS CONDITIONS

description: ABSTRACT In this paper, we explore how attention to language and communication has been one of the strategies to combat the pandemic and foster health justice in the deprived areas of the city. To investigate such aspect, we draw on the conceptions of enregisterment, de-escalation and orders of indexicality. We focus on practices of pragmatic survival enacted by Maré Mobilization Front.
DOI: 10.6084/m9.figshare.14177015.v1
title: Micronutrient supplementation affects DNA methylation signatures in male gonads with predicted intergenerational epigenetic inheritance involving the development of embryonic cells

description: Three groups of Atlantic salmon were fed with graded levels of micronutrient supplementation. Gonad and liver samples were collected at final harvest stage. The samples were processed by two restriction enzymes, MspI and TaqI, for RNA-seq and RRBS.<br>It contains the following 13 Excel files with formatted and annotated RNA-seq and RRBS results.<br>1. DEGs for L2:L12. DEGs for L3:L1 3. DMCs and CpG sites for L2:L1 4. DMCs and CpG sites for L3:L1 5. DMCs by region for gonad L2:L1 6. DMCs by region for gonad L3:L1 7. DMGs for L2:L1 8. DMGs for L3:L1 9. DEG^DMCs for gonad10. DEG^DMCs for liver11. DEG^DMCs for G&L12. common DMCs13. common DMGs<br>Detailed descriptions of the data are found in the Additional File 1 of Saito et al., 2021.<br>
DOI: 10.6084/m9.figshare.6045362.v1
title: A smartphone-based apple yield estimation application using imaging features and the ANN method in mature period

description: ABSTRACT: Apple yield estimation using a smartphone with image processing technology offers advantages such as low cost, quick access and simple operation. This article proposes distribution framework consisting of the acquisition of fruit tree images, yield prediction in smarphone client, data processing and model calculation in server client for estimating the potential fruit yield. An image processing method was designed including the core steps of image segmentation with R/B value combined with V value and circle-fitting using curvature analysis. This method enabled four parameters to be obtained, namely, total identified pixel area (TP), fitting circle amount (FC), average radius of the fitting circle (RC) and small polygon pixel area (SP). A individual tree yield estimation model on an ANN (Artificial Neural Network) was developed with three layers, four input parameters, 14 hidden neurons, and one output parameter. The system was used on an experimental Fuji apple (Malus domestica Borkh. cv. Red Fuji) orchard. Twenty-six tree samples were selected from a total of 80 trees according to the multiples of the number three for the establishment model, whereby 21 groups of data were trained and 5 groups o data were validated. The R2 value for the training datasets was 0.996 and the relative root mean squared error (RRMSE) value 0.063. The RRMSE value for the validation dataset was 0.284 Furthermore, a yield map with 80 apple trees was generated, and the space distribution o the yield was identified. It provided appreciable decision support for site-specific management.
DOI: 10.6084/m9.figshare.6044858.v1
title: Biochar versus hydrochar as growth media constituents for ornamental plant cultivation

description: ABSTRACT Biochar and hydrochar have been proposed as novel materials for providing soilless growth media. However, much more knowledge is required before reliable advice can be given on the use of these materials for this purpose. Depending on the material and the technology applied (pyrolysis or hydrothermal carbonization), phytotoxicity and greenhouse gas emissions have been found for certain chars. In this study, our aim was to assess the feasibility of three chars as substrate constituents. We compared two biochars, one from forest waste and the other from olive mill waste, and a hydrochar from forest waste. We studied how chars affected substrate characteristics, plant performance, water economy and respiratory CO2 emission. Substrates containing biochar from forest waste showed the best characteristics, with good air/water relationships and adequate electrical conductivity. Those with biochar from olive mill waste were highly saline and, consequently, low quality. The substrates with hydrochar retained too much water and were poorly aerated, presenting high CO2 concentrations due to high respiratory activity. Plants performed well only when grown in substrates containing a maximum of 25 % biochar from forest waste or hydrochar. After analyzing the char characteristics, we concluded that biochar from forest waste could be safely used as a substrate constituent and is environmentally friendly when applied due to its low salinity and low CO2 emission. However, biochar from olive mill waste and hydrochar need to be improved before they can be used as substrate constituents.
DOI: 10.6084/m9.figshare.14307540
title: Global geography of jokes

description: Abstract Abstract: Jokes between countries are useful to reveal the ethnotypes existing in each of them, to represent them in cartographic form allows to perceive their distribution and the spatial projection of mockery: who are we laughing at, who are the scapegoats for the inhabitants of each country? Based on the analysis of an ad hoc database covering more than 60% of the countries and territories of the world and 90% of its population, the text shows that these jokes are social constructions, have a temporality and are divided basically in two categories, from top to bottom and from bottom to top.
DOI: 10.6084/m9.figshare.14307539
title: SOIL COMPACTION AND WATERPROOFING AND IMPLICATIONS IN URBAN FLUVIAL CHANNELS

description: Abstract Urban expansion and densification have resulted in phenomena related to the degradation of watersheds. This work evaluated the influence of increased anthropic pressure on the imbalances involving erosive processes and the consequent degradation of the river plain of a hydrographic basin in Aparecida de Goiânia - GO. The methodology analyses the spatial-temporal correlation between reduced concentration time, increased runoff estimates, and the consequent degradation of the plain in 1992, 2005, and 2016. The results indicate an increase in erosion in segments of channel convergence, with a low altimetric gradient and the occurrence of Fluvent Entisol, stemming from the increase in volume and flow peaks arising from areas with significant densification processes in the last twenty-four years. Thus, the importance of using indicators of increased anthropic pressure to understand the impacts related to urban density.
DOI: 10.6084/m9.figshare.14307537
title: MEMORY AND CENTRALITY IN RESENDE

description: Abstract This article discusses the role of the Main Center in a medium-sized city undergoing urban restructuring at the interface between space and time and its different locational logics and dynamics. Our approach includes mapping the spatiality of the economic activities of Resende’s downtown and Campos Elíseos, especially bank branches and public administration buildings. The research materials were photographic records and their respective historical interpretations, reported memories given through interviews, and publications by memorialists, historians, and official sources, among others. The aim was to reconstitute the “present of the past”, following a chronological path from the time of the peak and decline of coffee production, at the beginning and mid-nineteenth century, respectively, to the formation of the Main Center of Campos Elíseos in the mid-twentieth century. The discussion has three parts: the formation of the Historical Center of Resende; the Center crossing the river, which debates the formation of the Main Center in Campos Elíseos, and finally, a reflection on the spatial struggle of urban centrality in a medium-sized city.
DOI: 10.6084/m9.figshare.14307536
title: MONITORING OF BRAZILIAN SEASONALLY DRY TROPICAL FOREST BY REMOTE SENSING

description: Abstract Among the various characteristics of the Brazilian territory, one is foremost: the country has the second largest forest reserve on the planet, accounting for approximately 10% of the total recorded global forest formations. In this scenario, seasonally dry tropical forests (SDTF) are the second smallest forest type in Brazil, located predominantly in non-forested biomes, such as the Cerrado and Caatinga. Consequently, correct identification is fundamental to their conservation, which is hampered as SDTF areas are generally classified as other types of vegetation. Therefore, this research aimed to monitor the Land Use and Coverage in 2007 and 2016 in the continuous strip from the North of Minas Gerais to the South of Piauí, to diagnose the current situation of Brazilian deciduous forests and verify the chief agents that affect its deforestation and regeneration. Our findings were that the significant increase in cultivated areas and the spatial mobility of pastures contributed decisively to the changes presented by plant formations. However, these drivers played different roles in the losses/gains. In particular, it was concluded that the changes occurring to deciduous forests are particularly explained by pastured areas. The other vegetation types were equally impacted by this class, but with a more incisive participation of cultivation.
DOI: 10.6084/m9.figshare.14307533
title: REGIONAL DEVELOPMENT AND THE LEGAL CONSTRUCTION OF NORTHEASTERN

description: Abstract The Northeast is a concept that is crystallized in the unconscious of the Brazilian population, designating a geographically located portion of the national territory. This article proposes to revisit the construction of this concept from a political and legal perspective, showing the choices made in each historical period to provide the intended regional development through institutions such as Chesf, DNOCS, and Codevasf, among others. The conclusion points to possible ways to reinvent the region, mainly due to the concept of the Matopiba. The study follows Geolegal methodology by using a historiographical base of the legal facts (Brazilian legislation) to produce a geographical value (regional development of the Northeast).