cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.w7b3w9
title: Occurrence Download

description: A dataset containing 12981 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Tapirus terrestris (Linnaeus, 1758), Tapirus terrestris spegazzinii Amhegino, 1909, Tapirus terrestris colombianus Hershkovitz, 1954, Tapirus terrestris terrestris, Tapirus terrestris aenigmaticus Gray, 1872, Tapirus terrestris peruvianus Gray, 1872, Tapirus terrestris guianae J.A.Allen, 1916, Tapirus terrestris obscura Dennler, 1939)"
 ]
}

 The dataset includes 12981 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020845-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9w5ve
title: Occurrence Download

description: A dataset containing 1336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma californiense Gray, 1853)"
 ]
}

 The dataset includes 1336 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020846-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scwtby
title: Occurrence Download

description: A dataset containing 640 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Margaritaria indica (Dalzell) Airy Shaw"
 ]
}

 The dataset includes 640 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020848-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3tnx9
title: Occurrence Download

description: A dataset containing 1336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma californiense Gray, 1853)"
 ]
}

 The dataset includes 1336 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020850-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xahdnp
title: Occurrence Download

description: A dataset containing 2088 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eonycteris spelaea (Dobson, 1871)",
 "Year 1864-2024"
 ]
}

 The dataset includes 2088 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020849-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4gd4gp
title: Occurrence Download

description: A dataset containing 1482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Pseudacris hypochondriaca (Hallowell, 1854))"
 ]
}

 The dataset includes 1482 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020851-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w68e6a
title: Occurrence Download

description: A dataset containing 1482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Pseudacris hypochondriaca (Hallowell, 1854))"
 ]
}

 The dataset includes 1482 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020852-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.naghrq
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Pseudacris sierra (Jameson, Mackey & Richmond, 1966))"
 ]
}

 The dataset includes 191 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020853-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9wx5e
title: Occurrence Download

description: A dataset containing 36515 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36515 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020854-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8fkbmk
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Pseudacris sierra (Jameson, Mackey & Richmond, 1966))"
 ]
}

 The dataset includes 191 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020855-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nahpwb
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trapania tamaraw Smirnoff, Donohoo & Gosliner, 2022"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020857-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8303449
title: Drug-patent DB

description: A compressed file of a relational database of drug-related patented compounds (drug-patent DB). This DB was formatted using SQLite. The compound information was extracted from SureChEMBL.
DOI: 10.5281/zenodo.8303450
title: Drug-patent DB

description: A compressed file of a relational database of drug-related patented compounds (drug-patent DB). This DB was formatted using SQLite. The compound information was extracted from SureChEMBL.
DOI: 10.15468/dl.5fajr8
title: Occurrence Download

description: A dataset containing 24920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Taricha torosa (Rathke, 1833))"
 ]
}

 The dataset includes 24920 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020856-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vy397c
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Canada",
 "Country is Canada"
 ]
 },
 "TaxonKey is one of (Thalictrum amphibolum Greene)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020858-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdghqx
title: Occurrence Download

description: A dataset containing 24920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Taricha torosa (Rathke, 1833))"
 ]
}

 The dataset includes 24920 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020859-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.28paz3
title: Occurrence Download

description: A dataset containing 1612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Anaxyrus californicus (Camp, 1915))"
 ]
}

 The dataset includes 1612 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020860-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5p4ae
title: Occurrence Download

description: A dataset containing 146006 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calanidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 146006 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020822-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27794106
title: <b>肉桂醛对耐药性发挥抗菌作用</b><b><i>副猪格莱塞菌</i></b><b> by targeting the histidine kinase QseC and biofilm</b>

description: <i>Glaesserella parasuis</i> （<i>G. parasuis</i>） 是引起 Glaesser 病的最重要猪病原体之一，QseBC 双组分系统 （TCS） 是维持<i>副猪格</i>。在这里，我们根据初步的抗菌药敏试验进一步研究了药用食品同源化合物肉桂醛 （CAL） 对<i>副猪毛霉</i>和潜在机制。结果表明，基于<i>G. parasuis 副猪蚜</i>和细胞活力受损基于 生物膜生物量 评估、共聚焦激光扫描显微镜 （CLSM） 测定、 扫描电子显微镜 （SEM） 观察、电导率和细胞内铁测定.特别是，CAL 抑制 G 的 QseBC TCS<i>G</i>。<i> 通过</i>定量逆转录聚合酶链反应 （qRT-PCR） 下调 QseBC 相关基因并淬灭 QseC 蛋白，分子对接和荧光猝灭测定。此外，我们使用雌性 BALB/C 小鼠进行<i>体内</i>测试，证明 CAL 对<i>副猪 G.</i>感染的小鼠表现出显着的杀菌和抗炎活性。这些发现突出了 多方面杀菌特性 CAL 对耐药<i>性副猪 G. 的</i>，特别是<i> </i>通过靶向 QseC 受体。因此，CAL 可能作为 QseC 抑制剂在临床环境中控制和治疗<i>副猪格鲁吉</i>病毒感染。
DOI: 10.6084/m9.figshare.27794106.v1
title: <b>Cinnamaldehyde exerts antibacterial effect against resistant </b><b><i>Glaesserella parasuis</i></b><b> by targeting the histidine kinase QseC and biofilm</b>

description: <i>Glaesserella parasuis</i> （<i>G. parasuis</i>） 是引起 Glaesser 病的最重要猪病原体之一，QseBC 双组分系统 （TCS） 是维持<i>副猪格</i>。在这里，我们根据初步的抗菌药敏试验进一步研究了药用食品同源化合物肉桂醛 （CAL） 对<i>副猪毛霉</i>和潜在机制。结果表明，基于<i>G. parasuis 副猪蚜</i>和细胞活力受损基于 生物膜生物量 评估、共聚焦激光扫描显微镜 （CLSM） 测定、 扫描电子显微镜 （SEM） 观察、电导率和细胞内铁测定.特别是，CAL 抑制 G 的 QseBC TCS<i>G</i>。<i> 通过</i>定量逆转录聚合酶链反应 （qRT-PCR） 下调 QseBC 相关基因并淬灭 QseC 蛋白，分子对接和荧光猝灭测定。此外，我们使用雌性 BALB/C 小鼠进行<i>体内</i>测试，证明 CAL 对<i>副猪 G.</i>感染的小鼠表现出显着的杀菌和抗炎活性。这些发现突出了 多方面杀菌特性 CAL 对耐药<i>性副猪 G. 的</i>，特别是<i> </i>通过靶向 QseC 受体。因此，CAL 可能作为 QseC 抑制剂在临床环境中控制和治疗<i>副猪格鲁吉</i>病毒感染。
DOI: 10.15468/dl.r4666p
title: Occurrence Download

description: A dataset containing 1612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Anaxyrus californicus (Camp, 1915))"
 ]
}

 The dataset includes 1612 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020862-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ztdtk6
title: Occurrence Download

description: A dataset containing 2467 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontonema tubaeforme (Bertol.) Kuntze"
 ]
}

 The dataset includes 2467 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020864-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m65nuv
title: Occurrence Download

description: A dataset containing 9750 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Aneides lugubris (Hallowell, 1849))"
 ]
}

 The dataset includes 9750 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020865-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdug5t
title: Occurrence Download

description: A dataset containing 60319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalanidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 60319 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020863-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7ktq6
title: Occurrence Download

description: A dataset containing 9750 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Aneides lugubris (Hallowell, 1849))"
 ]
}

 The dataset includes 9750 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020866-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjvag3
title: Occurrence Download

description: A dataset containing 144732 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ipomoea L.",
 "Year 2014-2024"
 ]
}

 The dataset includes 144732 records from 729 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020861-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16634946
title: Cell-specific gene association network construction from single-cell RNA sequence

description: The recent development of a high throughput single-cell RNA sequence devises the opportunity to study entire transcriptomes in the smallest detail. It also leads to the characterization of molecules and subtypes of a cell. Cancer epigenetics induced not only from individual molecules but also from the dysfunction of the system and the coupling effect of genes. While rapid advances are being made in the development of tools for single-cell RNA-seq data analysis, few slants are noticed in the potential advantages of single-cell network construction. Here, we used network perturbation theory with significant analysis to develop a cell-specific network that provides an insight into gene–gene association based on molecular expressions in a single-cell resolution. Besides, using this method, we can characterize each cell by inspecting how genes are connected and can identify the hub genes using network degree theory. Pathway & Gene enrichment analysis of the identified cell-specific high network degree genes supported the effectiveness of this method. This method could be beneficial for personalized drug design and even therapeutics.
DOI: 10.6084/m9.figshare.16699090
title: Improving porcine SCNT efficiency by selecting donor cells size

description: Considerable advancements have recently been achieved in porcine somatic cell nuclear transfer (SCNT), but the efficiency remains low. Donor cell size might play an important role in SCNT, but its effects in pigs remain unclear. This study aimed to evaluate the efficiency of porcine SCNT by selecting donor cells of suitable size. Porcine fetal fibroblasts (PFFs) were divided into three groups, group S (small, d ≤ 13 μm), group M (medium, 13 μm 18 μm), and their biological characteristics were analyzed. Next, SCNT was performed using PFFs of different sizes to evaluate the developmental potential of reconstructed embryos. The data showed that PFFs in groups S, M and L accounted for 17.5%, 47.7% and 34.8% of cells, respectively. Morphologically, cells in group S exhibited clear and regular cell membranes and nuclei, whereas cells in groups M and L displayed varying degrees of cell membrane protuberance, karyo-pyknosis, autophagy and mitochondrial abnormalities. In addition, the growth status and proliferation capabilities of cells in group S were significantly better than those of group M and group L. The percentage of cells at G0/G1 in group S and M were significantly greater than group L. The senescence rate of group S was lower than group M and group L. The apoptosis rate of group S was significantly lower than that of group L but comparable to that of group M . The cleavage rate of group S was also significantly greater than that of group M but comparable to that of group L . The blastocyst rate of group S was significantly greater than that of group M and group L. The blastocyst cell numbers of group S were also significantly greater than those of group M and group L. These findings suggested that small PFFs with a diameter of less than 13 μm are more suitable donor cells for SCNT in pigs. <b>Abbreviations</b>: DMEM: Dulbecco’s modified Eagle’s medium; FBS: Fetal bovine serum; PBS: Phosphate buffer saline; PFFs: Porcine fetal fibroblast cells; SCNT: Somatic cell nuclear transfer.
DOI: 10.6084/m9.figshare.16634946.v1
title: Cell-specific gene association network construction from single-cell RNA sequence

description: The recent development of a high throughput single-cell RNA sequence devises the opportunity to study entire transcriptomes in the smallest detail. It also leads to the characterization of molecules and subtypes of a cell. Cancer epigenetics induced not only from individual molecules but also from the dysfunction of the system and the coupling effect of genes. While rapid advances are being made in the development of tools for single-cell RNA-seq data analysis, few slants are noticed in the potential advantages of single-cell network construction. Here, we used network perturbation theory with significant analysis to develop a cell-specific network that provides an insight into gene–gene association based on molecular expressions in a single-cell resolution. Besides, using this method, we can characterize each cell by inspecting how genes are connected and can identify the hub genes using network degree theory. Pathway & Gene enrichment analysis of the identified cell-specific high network degree genes supported the effectiveness of this method. This method could be beneficial for personalized drug design and even therapeutics.
DOI: 10.6084/m9.figshare.16699508
title: Pan-cancer analysis indicates that MYBL2 is associated with the prognosis and immunotherapy of multiple cancers as an oncogene

description: MYBL2 has been demonstrated to be an oncogene in some cancers, but there is no pan-cancer analysis at the macro level. We used multiple online or offline bioinformatic tools to examine the effects of MYBL2 in human cancers. We first identified that MYBL2 was highly expressed and related to the stage and grade of most cancers. The results of survival analysis from two databases showed that high MYBL2 expression was positively correlated with a poor prognosis for most cancer patients. We observed a significant difference in the promoter methylation level of MYBL2 in cancers such as colon adenocarcinoma and liver hepatocellular carcinoma versus normal controls. We found that MYBL2 can affect the tumor immune microenvironment by influencing the immune infiltration level and expression level of CD4<sup>+</sup> T cells, CD8<sup>+</sup> T cells, cancer-associated fibroblasts (CAFs) and immune checkpoint-associated cells. Functional enrichment analysis of MYBL2 identified that MYBL2 can play a crucial role in cancers by regulating spliceosomes, DNA replication and the cell cycle. Moreover, we verified the function of MYBL2 in three cancer cells of glioma, breast cancers and liver cancers, and the results showed that MYBL2 can regulate the cell cycle and proliferation ability of cancers
DOI: 10.6084/m9.figshare.16699508.v1
title: Pan-cancer analysis indicates that MYBL2 is associated with the prognosis and immunotherapy of multiple cancers as an oncogene

description: MYBL2 has been demonstrated to be an oncogene in some cancers, but there is no pan-cancer analysis at the macro level. We used multiple online or offline bioinformatic tools to examine the effects of MYBL2 in human cancers. We first identified that MYBL2 was highly expressed and related to the stage and grade of most cancers. The results of survival analysis from two databases showed that high MYBL2 expression was positively correlated with a poor prognosis for most cancer patients. We observed a significant difference in the promoter methylation level of MYBL2 in cancers such as colon adenocarcinoma and liver hepatocellular carcinoma versus normal controls. We found that MYBL2 can affect the tumor immune microenvironment by influencing the immune infiltration level and expression level of CD4<sup>+</sup> T cells, CD8<sup>+</sup> T cells, cancer-associated fibroblasts (CAFs) and immune checkpoint-associated cells. Functional enrichment analysis of MYBL2 identified that MYBL2 can play a crucial role in cancers by regulating spliceosomes, DNA replication and the cell cycle. Moreover, we verified the function of MYBL2 in three cancer cells of glioma, breast cancers and liver cancers, and the results showed that MYBL2 can regulate the cell cycle and proliferation ability of cancers
DOI: 10.6084/m9.figshare.16699508.v2
title: Pan-cancer analysis indicates that MYBL2 is associated with the prognosis and immunotherapy of multiple cancers as an oncogene

description: MYBL2 has been demonstrated to be an oncogene in some cancers, but there is no pan-cancer analysis at the macro level. We used multiple online or offline bioinformatic tools to examine the effects of MYBL2 in human cancers. We first identified that MYBL2 was highly expressed and related to the stage and grade of most cancers. The results of survival analysis from two databases showed that high MYBL2 expression was positively correlated with a poor prognosis for most cancer patients. We observed a significant difference in the promoter methylation level of MYBL2 in cancers such as colon adenocarcinoma and liver hepatocellular carcinoma versus normal controls. We found that MYBL2 can affect the tumor immune microenvironment by influencing the immune infiltration level and expression level of CD4<sup>+</sup> T cells, CD8<sup>+</sup> T cells, cancer-associated fibroblasts (CAFs) and immune checkpoint-associated cells. Functional enrichment analysis of MYBL2 identified that MYBL2 can play a crucial role in cancers by regulating spliceosomes, DNA replication and the cell cycle. Moreover, we verified the function of MYBL2 in three cancer cells of glioma, breast cancers and liver cancers, and the results showed that MYBL2 can regulate the cell cycle and proliferation ability of cancers