cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.qm0b25h/7
title: Biederman et al (2019) NKA activity

description: Sodium-potassium ATPase activity in brains of Notothenia coriiceps and Chaenocephalus aceratus.
DOI: 10.5061/dryad.qm0b25h/8
title: Biederman et al (2019) PK activity

description: Pyruvate kinase activity in brains of Notothenia coriiceps and Chaenocephalus aceratus.
DOI: 10.5061/dryad.qm0b25h/9
title: Biederman et al (2019) polar lipid profile

description: Polar lipid composition of myelin in Notothenia coriiceps and Chaenocephalus aceratus
DOI: 10.5061/dryad.r246hv0.2
title: Data from: Prior reproduction alters how mitochondria respond to an oxidative event
DOI: 10.5061/dryad.r246hv0.2/1.2
title: Final Data Summary_g March 29

description: This file includes all results of the hedges g calculations. A list of abbreviations can be found in the supplement to the manuscript.
DOI: 10.5061/dryad.r246hv0.2/2.2
title: R Code for Hood et al 2019 X-ray Repro Study

description: This file provides the R code for all analyses
DOI: 10.5061/dryad.r246hv0.2/3.2
title: Data Hood et al

description: This file includes all data analyzed.  A list of abbreviations can be found in the manuscript supplement.
DOI: 10.5061/dryad.r246hv0.2/4.2
title: Reproductive output data Hood et al

description: This file includes all data used to look at the impact of reproductive output on the variables quantifying in this study.  A list of abbreviations can be found in the supplement to the manuscript.
DOI: 10.5061/dryad.r48d279/1
title: bat references

description: A list of references to publications yielding site-specific inventory data for bats from around the world. Raw data are also reposited in the Ecological Register.
DOI: 10.5061/dryad.r48d279/2
title: bat register

description: Site-specific inventory data for bats from around the world. Each line includes a count of the individuals belonging to a species found at a site. Raw data are also reposited in the Ecological Register.
DOI: 10.5061/dryad.r886083/1
title: Complete raw data

description: Complete raw data used for the publication.
DOI: 10.5061/dryad.rd1570s/1
title: GenBank_accession_numbers

description: Excel worksheet with the GenBank accession numbers, geographical locality sampled and molecular markers used from all samples collected in the field in this work. AM: Amazon Forest; AM/CE: Amazon Forest transition with Cerrado; AT: Atlantic Forest; PA: Pampas; CE/CA: Cerrado transition with Caatinga; CE: Cerrado.
DOI: 10.5061/dryad.rd1570s/2
title: Scripts_used_in_ABC_analysis

description: All scripts used to perform the Approximate Bayesian Computation (ABC) analysis are available here. The objective of this analysis was to infer the geographical origin of Helicoverpa armigera in the Americas using COI mitochondrial molecular marker. The analyses simulated computationally were performed in the ms 20161016 coalescent sampler and the result points to an introduction coming from Europe, at least in part. The scripts and files are zipped and named (01-14) in the order they were used.
DOI: 10.5061/dryad.rm6qt87/1
title: Supporting information
DOI: 10.5061/dryad.s6902b5/3
title: Daphnia Colour from Migration Experiments

description: This file pertains to Figure 1b. 
Rep: Replicate number; levels: 1,2
Tube: Migration tube number; levels: 1-40
Migration: Migration schedule; levels: “Shallow”, “Deep”
Sample Depth: Depth at which individual Daphnia were sampled from prior to beginning experiment; levels: “Epilimnion” (3-5 meters), “Hypolimnion” (15 meters)
Treatment: Combination of Hb state at the start of experiment and migration schedule; levels: “pales.shallow”, “reds.deep”, “pales.deep”, “reds.shallow”
Date: Census date (all 2014)
Experiment Day: Days since start of experiment; levels: 0-14
Red: Amount of red colour from 0-255
Green: Amount of green colour from 0-255
Blue: Amount of blue colour from 0-255
Redness:  Distance from pure red (255, 0, 0), calculated with the following: sqrt((255-Red)^2+(0-Green)^2+(0-Blue)^2).
DOI: 10.5061/dryad.s6902b5/4
title: Environmental Conditions (temp, oxygen, chla) Summer 2014

description: This file pertains to Figure 2. 
Depth: Depth of measurement in Round Lake, Ontario
Temperature.C: Temperature in degrees Celsius
Oxygen.mg.L: Oxygen concentration in milligrams per liter 
Chl.a: Chlorophyll a concentration in micrograms per liter
DOI: 10.5061/dryad.s6902b5/5
title: Mean Redness per Tube

description: This figure pertains to Figure 5 and is a summary table derived from Daphnia Colour from Migration Experiments. 
Tube: Migration tube number; levels: 1-40
Day: Days since start of experiment; levels: 0-14
Treatment: Combination of Hb state at the start of experiment and migration schedule; levels: “pales.shallow”, “reds.deep”, “pales.deep”, “reds.shallow”
Mean Redness: Mean distance from pure red for each tube
DOI: 10.5061/dryad.s6902b5/6
title: Mean_Depth

description: This file pertains to Figure 2 and is a summary table derived from MigrationDynamics. 
Rep: Replicate number; levels: 1,2
Time: Time of day on 24 hour schedule
Phenotype: Colour morph; levels: “Pale”, “Red”
Mean Depth: Mean depth of individual Daphnia at sampling time
Median Depth: Median depth of individual Daphnia at sampling time
DOI: 10.5061/dryad.s6902b5/7
title: Migration_Experiment_Size_Eggs

description: This file pertains to Figure 4 and Figure 5. 
Rep: Replicate number; levels: 1,2
Tube: Migration tube number; levels: 1-40
Size Class: Individual Daphnia size class; levels 1-5, where 1: &lt;1.0mm; 2: 1.0-1.4mm; 3: 1.4-1.85mm; 4: 1.85-2.3mm; 5 &gt;2.3mm
Number of Eggs: Number of eggs in the brood pouch of each Daphnia
Migration: Migration schedule; levels: “Shallow”, “Deep”, “Weird” (Weird was a designation given to one tube which, due to sensor problems, did not follow the intended migration schedule. This tube was ultimately excluded from the analysis). 
Sample Depth: Depth at which individual Daphnia were sampled from prior to beginning experiment; levels: “Epi” (3-5 meters), “Hypo” (15 meters)
Date: Census date (all 2014)
Experiment Day: Days since start of experiment; levels: 0-14
Size.mm: Estimated size of each Daphnia in millimeters (taken as the average of each size class) 
Treatment: Combination of Hb state at the start of experiment and migration schedule; levels: “pales.shallow”, “reds.deep”, “pales.deep”, “reds.shallow”, “weird” (“weird” was a designation given to one tube which, due to sensor problems, did not follow the intended migration schedule. This tube was ultimately excluded from the analysis)
DOI: 10.5061/dryad.s6902b5/8
title: MigrationDynamics

description: This file pertains to Figure 1c.  
Rep: Replicate number; levels: 1,2
Depth: Depth of Daphnia sampling in Round Lake
Morph: Colour morph; levels: “Pale”, “Red”
Time: Time of day on 24-hour schedule
Count: Number of Daphnia
Proportion: # animals sampled at depth X, time Y/total animals sampled over time Y
Percent: (# animals sampled at depth X, time Y/total animals sampled over time Y) * 100
DOI: 10.5061/dryad.sj52ds3/1
title: Data

description: dataset-file
DOI: 10.5061/dryad.sn81548/1
title: Tables_SI_R

description: Supplementary Tables
DOI: 10.5061/dryad.t1s010m/1
title: MengeEtAl_Appendix1_SuppInfo_Final

description: This includes further details of the statistical analyses used, together with additional figures (Figures S1 to S13) and an additional table (Table S1).
DOI: 10.5061/dryad.t1s010m/2
title: MengeEtAl_Appendix2_SuppInfo_Final

description: This is a spreadsheet showing key data used in the statistical analyses presented.
DOI: 10.5061/dryad.t6r3mq1/1
title: Data Caro et al 2019
DOI: 10.17632/3hdc8296xh.3
title: ME_EPB_xls

description: Media Exposure and Individuals’ Emergency Preparedness Behaviors for Coping with Natural and Human-Made Disasters
DOI: 10.17632/3hdc8296xh.4
title: ME_EPB_xls

description: Media Exposure and Individuals’ Emergency Preparedness Behaviors for Coping with Natural and Human-Made Disasters
DOI: 10.17632/hjbjzmpmxp.1
title: Data for: Elemental Abundance Patterns and Sr-, Nd- and Hf-isotope Systematics for the Yellowstone Hotspot and Columbia River Flood Basalts: Bearing on Petrogenesis

description: Raw isotope data for CRB and SRP samples and associated data and plots
DOI: 10.5061/dryad.121s23b/2
title: Schilling 2019 Data

description: A zip folder with the data and python code for all figures of the publication (including readme files).
DOI: 10.5061/dryad.27812c7/1
title: Microsatellite genotypes from Caribbean spiny lobster

description: Genotypes from 14 microsatellite loci from adult and postlarvae population of the Caribbean spiny lobster, Panulirus argus.
DOI: 10.5061/dryad.330tj7f/1
title: Fish distribution database

description: This file contains the freshwater fish species presence/absence data used in our analysis. The first column lists each of the rivers for which we had community data, while the remaining columns indicate the presence/absence of individual species coded as 1 = present, 0 = absent.
DOI: 10.5061/dryad.39121ns/1
title: CheungetlSupplementary ostracod and environmental data

description: Table S1 Ostracode dataset for figures 4-6; 																					
Table S2 Ostracode dataset of sampling locations used in RDA															
Table S3 Environmental data of sampling locations used in RDA
DOI: 10.5061/dryad.39jf355/2
title: PfEMP1 counting original data file

description: This file contains the original data underpinning the work published by Sanchez et al. (2019) in Communications Biology. The file is organized according to the figures and graphs published in the aforementioned publications
DOI: 10.5061/dryad.59p3vv5/1
title: Microcosm experiment data

description: File contains experimental data from the microcosm experiment, namely: flask ID, author initials, date, initial microcosm richness (species), initial microcosm richness (groups), presence dummies for all 8 species, total biovolume, cell counts for each of the 5 groups, temperature before exposure (TB), minimum, maximum, standard deviation (sd) of TB within Petri dish, time of measurement of TB, temperature after exposure to light (TA), minimum, maximum, sd of TA, time of measure of TA, temperature difference (TA-TB), mean, sd, minimum, maximum RGB, "second batch" dummy, time trend for the first batch, time (in hours, minutes), time trend of the second batch, dummy for the presence of the IG (isomorphic group), complementarity and sampling effects (and intermediary calculations) within each microcosm. Volumes are in 10e-6 m3, temperatures in °C.
DOI: 10.5061/dryad.5hr7f31/10
title: BEAST_files

description: Input files for BEAST analyses. BEAST was run with (Ret) and without (Rf) the out-group Reticulitermes taxa.
DOI: 10.5061/dryad.5hr7f31/11
title: BAPS_files

description: Input files for BAPS analyses, including a file that shows the mtDNA COI+COII locus haplotypes for each data point. To determine the number of geographically cohesive genetic groups of R. flavipes, we analyzed geo-referenced mtDNA sequences in BAPS v.6.0. We assessed values of K (i.e., the number of clusters) ranging from 2–20, with 10 replicate runs each.
DOI: 10.5061/dryad.5hr7f31/4
title: Species distribution modeling projections

description: Species distribution models (SDMs) were constructed using the ‘biomod2’ package in R. We first ran a rectilinear surface range envelope model, and then, from outside the area predicted as suitable habitat, we picked 20 independent sets of 100 pseudo-absence points, each of which were combined with the same 91 presence records. Four modeling algorithms were run: artificial neural networks, generalized boosted models or boosted regression trees, random forest, and maximum entropy. We used 5 cross-validation runs per algorithm, for a total of 400 runs (4 algorithms x 5 cross-validations x 20 datasets), with 5,000 iterations per run. To assess model performance, 75% of the data were used for training, with 25% set aside as "out-of-bag" test data. To maximize the accuracy of presence/absence classification, we used the True Skill Statistic (TSS = sum of sensitivity and specificity – 1), where SDMs with mean TSS above 0.2 were retained. We then used the ensemble framework to obtain a weighted average of all SDMs, where SDMs were weighted according to TSS values. Projections: present-day SDMs were based on mean climatological data spanning 1960–1990, and historical distributions were modeled for the Mid-Holocene (~6,000 years ago), the Last Glacial Maximum (~22,000 years ago), and the Last Inter-glacial (~120,000–140,000 years ago).
DOI: 10.5061/dryad.5hr7f31/6
title: DIYABC_files

description: DIYABC approximate Bayesian computation input file and settings (scenarios and parameters)
DOI: 10.5061/dryad.5hr7f31/7
title: AppendicesS1-S8

description: Supplementary Methods:
Appendix S1. Population sampling.
Appendix S2. DNA isolation and genetic markers.
Appendix S3. Construction of species distribution models.
Appendix S4. Comparison of scenarios using approximate Bayesian computation.

Supplementary Results:
Appendix S5. Environmental factors used in species distribution models.
Appendix S6. Genetic divergence, environment, and spatial structure.
Appendix S7. Phylogeographic scenarios: error rates and parameter estimates.
Appendix S8. Population size changes: standard and compound neutrality tests.
DOI: 10.5061/dryad.5hr7f31/9
title: Approximate Bayesian computation - Posterior Probabilities and Error Rates

description: Posterior probabilities of phylogeographic scenarios in two-tier comparisons, type I (alpha, false positive) and type II (beta, false negative) error rates for "winning" scenarios (with highest posterior probabilities) in each step of each tier. The first tier has two steps (step 1: refugial scenarios; step 2: distributional shift scenarios). Tier 2 only has one step, but the winning scenarios from tier 1 are compared including or excluding a third scenario, vicariance. For the former (including vicariance), we computed type I and II error rates for all three scenarios, rather than just the winning scenario.
DOI: 10.5061/dryad.5m09t8k/4
title: SBT LQC

description: Lower quality control  of spebrutinib
DOI: 10.5061/dryad.5m09t8k/5
title: SBT Calibration curve

description: Spebrutinib calibration curve standards
DOI: 10.5061/dryad.5m09t8k/6
title: SBT LLQC

description: Signal to noise ratio at LLQC level of spebrutinib.
DOI: 10.5061/dryad.5m09t8k/7
title: SBT metabolic stability

description: Spebrutinib metabolic stability curve.
DOI: 10.5061/dryad.63mk0ks/10
title: Script3
DOI: 10.5061/dryad.63mk0ks/2
title: Dataset2A

description: Dataset2A.csv contains species means and standard deviations for photographic ("*weighted*" columns) and spectrophotometric indices ("tot.int*" columns) of female wing colouration (used in phylogenetic simulation analyses in Script2.R)
DOI: 10.5061/dryad.63mk0ks/3
title: Dataset2B

description: Dataset2B.csv contains site X species means and standard deviations for photographic ("*weighted*" columns) and spectrophotometric indices ("tot.int*" columns) of female wing colouration (used in phylogenetic simulation analyses in Script2.R)
DOI: 10.5061/dryad.63mk0ks/4
title: Dataset3

description: Dataset3.csv contains data used to conduct analyses of wing darkening and translocation experiments (see analyses in Script3.R). Columns: 'id'- unique id for each territory holder; 'male.sp'- species of territory holder; 'site'- code used for the population where male is a territory holder; 'female.treatment'- treatment of tethered female'; 'wing.darkening'- data used in analyses of wing darkening experiments; 'translocation' data used in analyses of translocation experiments.
DOI: 10.5061/dryad.63mk0ks/5
title: Hetaerina_phylogeny

description: Hetaerina_phylogeny.tree is the ultrametric, maximum clade credibility phylogeny file used in phylogenetic analyses
DOI: 10.5061/dryad.63mk0ks/6
title: Microsatellite_alleles
DOI: 10.5061/dryad.63mk0ks/7
title: IsolationByDistance

description: IsolationByDistance.csv contains pairwise Fst and distance measurements, and a variable indicating whether two populations are found in the same drainage
DOI: 10.5061/dryad.63mk0ks/8
title: Script1

description: Script1.R contains an R script that runs Spearman correlation analyses, including permutation analyses for cases where phenotypic similarity index is the same for both species in the comparsion
DOI: 10.5061/dryad.74m1689/4
title: resid_time

description: First year of records in Germany of nine study alien species
DOI: 10.5061/dryad.7c2g5rn/2
title: Field_exp_1stYear
DOI: 10.5061/dryad.7c2g5rn/3
title: Field_exp_2Year
DOI: 10.5061/dryad.7c2g5rn/4
title: Survival_cleandata_2Year
DOI: 10.5061/dryad.8pg7963/1
title: Orthogroup Transcriptome

description: Transcriptome in fasta file format containing all contigs for the PAC and GOL population that were assigned an Orthogroup.
DOI: 10.5061/dryad.8pg7963/2
title: PAC Transcriptome

description: Transcriptome in fasta file format containing all contigs for the PAC population
DOI: 10.5061/dryad.8pg7963/3
title: GOL Transcriptome

description: Transcriptome in fasta file format containing all contigs for the GOL population
DOI: 10.5061/dryad.8pg7963/4
title: Orthogroup RSEM merged matrix

description: RSEM matrix file containing total expression counts for all contigs in each Orthogroup category; header explanantion: P or G referes to population origin (PAC or GOL), 1 2 or 3 refers to treatment replicate, H or L refers to high or low pH exposure, 1 or 2 referes to time point 1 (day 9) or time point 2 (day 29).
DOI: 10.5061/dryad.8pg7963/5
title: Orthogroup

description: Text file containing all Orthogroup names and their corresponding contig names from the PAC and GOL population
DOI: 10.5061/dryad.bc72mt7/1
title: Soil chemical properties content of an old-growth forests (control) and a second-growth forest (clear-cut) assessed with a before-after-control-impact approach

description: Soil samples were collected within five plots in two different years (1978, 2017) and two forest treatments: old-growth forest (control) and second-growth forest (clear-cut). The data presented in the file are the soil properties content of each plot. Abbreviations: year = sampling year; treatment = control or clear-cut; rep = plot; pH = pH H2O; Al = Exchangeable Al (cmolc kg-1); Ca_Mg = Exchangeable Ca+Mg (cmolc kg-1); P = Available P (mg kg-1); K = Exchangeable K (cmolc kg-1)
DOI: 10.5061/dryad.cf540df/1
title: Prieto_etal_JoE_2019_decomposition
DOI: 10.5061/dryad.cr38pj0/1
title: SWD files for the calibration, evaluation, and background records

description: see README
DOI: 10.5061/dryad.jh5n738/2
title: IPM_model_data

description: County level invasive plant management expenditures and geographic, ecological, and economic demographics to assess the predictors of expenditures on invasive plant management at the county level.
DOI: 10.5061/dryad.jm8r78r/1
title: Morphological data of 43 agamid lizards

description: File containing morphological measurements, sexual dimorphic indices, sexual size dimorphic PC scores and metadata for all agamid samples at the species level (43 species), population level (9 populations) and individual level (102 individuals).
DOI: 10.5061/dryad.k67cg66/1
title: Figures 2 and 3

description: Ulf 7th March 2017; where R1 is the shortest emitter-receiver channel and R3 is the longest
DOI: 10.5061/dryad.k67cg66/2
title: Figures 4 and 5

description: Ulf 9th February 2017. Where R1 is the shortest emitter-receiver channel and R3 is the longest.
DOI: 10.5061/dryad.k67cg66/3
title: Metadata
DOI: 10.5061/dryad.k67cg66/4
title: Figure 6A Vebjorn
DOI: 10.5061/dryad.k67cg66/5
title: Figure 6A Ulf
DOI: 10.5061/dryad.k67cg66/6
title: Figure 6B Vebjorn
DOI: 10.5061/dryad.k67cg66/7
title: Figure 6B Ulf
DOI: 10.5061/dryad.k67cg66/8
title: Figure S1 A
DOI: 10.5061/dryad.kp81c2b/1
title: Data_for_Berson_&_Simmons_2019_Evolution

description: File that contains the data used in the quantitative genetic analyses.
DOI: 10.5061/dryad.kp81c2b/2
title: Pedigree_data_for_Berson_&_Simmons_2019_Evolution

description: File that contains the pedigree information used for the quantitative genetic analyses.
DOI: 10.5061/dryad.nk0bj96/1
title: Ochoa-Ochoa_etal_Traits_Appendix_S1_March2019_final

description: Appendix 1. Additional methods and results.
DOI: 10.5061/dryad.nk0bj96/2
title: Ochoa-Ochoa_etal_Traits_Appendix_S2_March2019_final

description: Appendix 2. References consulted for the amphibians traits database.
DOI: 10.5061/dryad.nk0bj96/3
title: Ochoa-Ochoa_etal_Appendix_S3_Data

description: Appendix 3. Data for the analyses.
DOI: 10.5061/dryad.pp56ck7/1
title: data upload

description: The analysed data
DOI: 10.5061/dryad.qm0b25h/10
title: Biederman et al (2019) synaptic membrane fluidity

description: Fluidity of synaptic membranes in brains of Notothenia coriiceps and Chaenocephalus aceratus.
DOI: 10.5061/dryad.qm0b25h/11
title: Biederman et al (2019) Km

description: Km of acetylcholine esterase (for acetylthiocholine iodide) in Notothenia coriiceps and Chaenocephalus aceratus.
DOI: 10.5061/dryad.r246hv0.1
title: Data from: Prior reproduction alters how mitochondria respond to an oxidative event
DOI: 10.5061/dryad.r246hv0.1/2.1
title: R Code for Hood et al 2019 X-ray Repro Study

description: This file provides the R code for all analyses
DOI: 10.5061/dryad.r246hv0.1/3.1
title: Data Hood et al

description: This file includes all data analyzed.  A list of abbreviations can be found in the manuscript supplement.
DOI: 10.5061/dryad.r246hv0.1/4.1
title: Reproductive output data Hood et al

description: This final includes all data used to look at the impact of reproductive output on the variables quantifying in this study.  A list of abbreviations can be found in the supplement of the manuscript.
DOI: 10.5061/dryad.r246hv0.1/5.1
title: Data summary Hood et al

description: This final includes all of the summary data in this study.  A list of abbreviations can be found in the supplement of the manuscript.
DOI: 10.5061/dryad.r246hv0.2/5.2
title: Data summary Hood et al

description: This file includes all of the summary data in this study. A list of abbreviations can be found in the supplement to the manuscript.
DOI: 10.5061/dryad.r246hv0.2/6.2
title: GLS Model Estimates March 29

description: This file includes all results of the generalize least squares model for the adult females. A list of abbreviations can be found in the supplement to the manuscript.
DOI: 10.6084/m9.figshare.4746889
title: Landmark dataset associated with "Lucy" A.L. 288-1 ribcage reconstruction

description: The landmark data associated with the reconstruction of the "Lucy" A.L. 288-1 ribcage
DOI: 10.6084/m9.figshare.4746895
title: PrimingDSM.zip

description: Data sets, variable descriptions and R scripts for the following article:<br><br>Günther, F., Dudschig, C., & Kaup, B. (2016). Predicting lexical priming effects from distributional semantic similarities: A replication with extension. Frontiers in Psychology, 7, 1646.<br><br>doi: http://dx.doi.org/10.3389/fpsyg.2016.01646
DOI: 10.6084/m9.figshare.4746886
title: Lucy A.L. 288-1 reconstructed pelvis

description: The reconstructed pelvis of "Lucy" A.L. 288-1 Australopithecus afarensus
DOI: 10.6084/m9.figshare.4746883
title: Lucy A.L. 288-1 reconstructed scapula

description: A reconstruction of the right scapula of Lucy A.L. 288-1
DOI: 10.6084/m9.figshare.4746895.v1
title: PrimingDSM.zip

description: Data sets, variable descriptions and R scripts for the following article:<br><br>Günther, F., Dudschig, C., & Kaup, B. (2016). Predicting lexical priming effects from distributional semantic similarities: A replication with extension. Frontiers in Psychology, 7, 1646.<br><br>doi: http://dx.doi.org/10.3389/fpsyg.2016.01646