cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp3/fd3rzp
title: Madagascar Hissing Cockroach hemolymph PO2, PCO2, and gas exchange parameters

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;This data set contains &lt;em&gt;in vivo &lt;/em&gt;measurements of&lt;em&gt; &lt;/em&gt;hemolymph PO&lt;sub&gt;2&lt;/sub&gt; and PCO&lt;sub&gt;2&lt;/sub&gt; made on Madagascar hissing cockroaches (&lt;em&gt;Gromphadorhina portentosa&lt;/em&gt;) using implanted micro fiber optic sensors (optodes). In addition, rate of CO&lt;sub&gt;2&lt;/sub&gt; release, ventilation frequency, and durations of the tri-phasic discontinuous gas exchange cycle associated with these measurements are also recorded. All measurements were performed while the cockroaches were breathing either normoxic and normocapnic air, hypoxic air (10 kPa PO&lt;sub&gt;2&lt;/sub&gt;), or hypercapnic air (2 kPa PCO&lt;sub&gt;2&lt;/sub&gt;) at 22 ºC.&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;These data were collected and analyzed according to the materials and methods in the associated JEB article. Briefly, Madagascar hissing cockroaches (&lt;em&gt;Gromphadorhina portentosa&lt;/em&gt;) were secured in a respirometry chamber with PCO&lt;sub&gt;2&lt;/sub&gt; and PO&lt;sub&gt;2&lt;/sub&gt; optodes implanted in their hemocoel. A reflection sensor beneath their abdomen recorded abdominal pumping movements. Cockroaches were exposed to normoxic normocapnia, hypoxic normocapnia, and normoxic hypercapnia. Roaches were exposed to these gas mixtures while intact and breathing continuously, and then decapitated which induced discontinuous gas exchange cycles (DGCs), before being exposed to the same gas mixtures as before. During these exposures, hemolymph PO&lt;sub&gt;2&lt;/sub&gt;, PCO&lt;sub&gt;2&lt;/sub&gt;, VCO&lt;sub&gt;2&lt;/sub&gt;, and abdominal movements were recorded continuously. The summary data extracted form these data traces are presented here.&lt;/p&gt;
description: &lt;b&gt;Usage notes&lt;/b&gt;&lt;br /&gt;&lt;p&gt;Each treatment assumed 6 cockroaches were used. Empty cells indicate that either equipment failure resulted in a parameter (e.g. hemolymph PCO2) not being recorded from that individual insect, or the insect did not display the breathing pattern required to record a certain parameter (e.g., the cockroach began breathing discontinuously, preventing the recording of continuous gas exchange parameters).&lt;/p&gt;
description: <b>Dryad version number:</b> 7
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/AkBA5YgEVB5TyDnytQHo67LCr3XCXxVq_YPpyx8wpvA
<b>Storage size:</b> 850156
<b>Visibility:</b> public
DOI: 10.5683/sp3/h90aua
title: Plant-pollinator specialization: Origin and measurement of curvature

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;A feature of biodiversity is the abundance of curves displayed by organs and organisms. Curvature is a widespread, convergent trait that has important ecological and evolutionary implications. In pollination ecology, the curvature of flowers and pollinator mouthparts (e.g. hummingbird bills) along the dorsiventral plane has been associated with specialization, competition, and species co-existence. Six methods have historically been used to measure curvature in pollination systems; we provide a solution to this inconsistency by defining curvature using well-established concepts from differential geometry. Intuitively, curvature is the degree to which a line is not straight, but more formally, it is the rate at which the tangent of a curve changes direction with respect to arc length. Here, we establish a protocol wherein a line is fitted against landmarks placed on an image of a curved organ or organism, then curvature is computed at many points along the fitted line and the sum taken. The protocol is demonstrated by studying the development of nectar spur curvature in the flowering plant genus &lt;em&gt;Epimedium&lt;/em&gt; (Berberidaceae). By clarifying the definition of curvature, our aim is to make the language of comparative morphology more precise and broadly applicable to capture other curved structures in nature.&lt;/p&gt;
description: &lt;b&gt;Usage notes&lt;/b&gt;&lt;br /&gt;&lt;p&gt;This dataset is primarily an RStudio project. To run the .R files, we recommend first opening the .RProj file in RStudio and installing the package `here`. This will allow you to run all of the .R scripts without changing any of the working directories.&lt;/p&gt;
description: <b>Dryad version number:</b> 4
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/Nl7BLBvARkUEHW4n8Rn_IggTBtwG0nkgHluTCEhygow
<b>Storage size:</b> 795531
<b>Visibility:</b> public
DOI: 10.5683/sp3/saemc8
title: Stable isotopes unravel the feeding mode-trophic position relationship in trematode parasites

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;div class="WordSection1" style="text-align:justify;"&gt;
&lt;p style="text-align:justify;"&gt;&lt;span&gt;1. Stable isotopes have been sporadically used over the last two decades to characterise host-parasite trophic relationships. The main reason for this scarcity is the lack of an obvious pattern in the ratio of nitrogen stable isotope values (&lt;i&gt;δ&lt;/i&gt;&lt;sup&gt;15&lt;/sup&gt;N) of parasites in comparison to their host tissues, which would be key to understand any host-parasite system dynamics. &lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify;"&gt;&lt;span&gt;2. To circumvent this, we focused on a single snail host, &lt;i&gt;Zeacumantus subcarinatus&lt;/i&gt;, and three of its trematode parasites. &lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify;"&gt;&lt;span&gt;3. We used stable isotopes to investigate each host-trematode trophic relationship and shed light on the mechanisms utilised by the parasite to reroute its hosts’ biomass. &lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify;"&gt;&lt;span&gt;4. All our trematodes were found to be &lt;sup&gt;15&lt;/sup&gt;N-enriched compared to their host, with their &lt;i&gt;δ&lt;/i&gt;&lt;sup&gt;15&lt;/sup&gt;N values strongly related to their feeding behaviours: passive vs active. It was possible to ‘rank’ these parasite species and assess their ‘relative’ trophic position using &lt;i&gt;δ&lt;/i&gt;&lt;sup&gt;15&lt;/sup&gt;N values. We also demonstrated that including a broader range of samples (e.g. host food and faeces, multiple parasite life stages) helped understand the metabolic mechanisms used by the various participants, and that using carbon stable isotope values and C:N ratios allowed to identify an important lipid requirement of these trematode parasites. Finally, we show how critical it is to not ignore parasitic infections as they can have a great influence on their host’s trophic position.&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify;margin-bottom:3px;"&gt;&lt;span&gt;5. We have shown that by focussing on a single host species and a single taxonomic group of parasites, we can remove a certain amount of variation recorded by broader isotope studies. We hope that these data will ultimately improve our ability to place parasites in food webs, and thus improve our understanding of the connections and interactions that dictate food web dynamics. &lt;/span&gt;&lt;/p&gt;
&lt;/div&gt;
description: <b>Dryad version number:</b> 4
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/thw10o5oKX1m9zmokRdnoWnmUulWIChqsrEKa5-8xV4
<b>Storage size:</b> 109729
<b>Visibility:</b> public
DOI: 10.5683/sp3/l2kwcq
title: The biogeography of community assembly: latitude and predation drive variation in community trait distribution in a guild of epifaunal crustaceans

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;While considerable evidence exists of biogeographic patterns in the intensity of species interactions, the influence of these patterns on variation in community structure is less clear. Using a model selection approach on measures of trait dispersion in crustaceans associated with eelgrass (&lt;i&gt;Zostera marina&lt;/i&gt;) spanning 30º of latitude in two oceans, we found that dispersion strongly increased with increasing predation and decreasing latitude. Ocean and epiphyte load appeared as secondary predictors; Pacific communities were more overdispersed while Atlantic communities were more clustered, and increasing epiphytes were associated with increased clustering. By examining how species interactions and environmental filters influence community structure across biogeographic regions, we demonstrate how both latitudinal variation in species interactions and historical contingency shape these responses. Community trait distributions have implications for ecosystem stability and functioning, and integrating large-scale observations of environmental filters, species interactions, and traits can help us predict how communities may respond to environmental change.&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;See main manuscript for details. &lt;/p&gt;
description: <b>Dryad version number:</b> 3
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/aDp4ta-Y8eERJgonEaHH2t-q6Q6P8ZEF93AO069ailk
<b>Storage size:</b> 223712
<b>Visibility:</b> public
DOI: 10.5683/sp3/usj6au
title: Ventilatory parameters measured in Madagascar hissing cockroaches during continuous gas exchange and DGCs

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;This dataset is presented in the manuscript titled: 'Discontinuous gas exchange in Madagascar hissing cockroaches is not a consequence of hysteresis around a fixed PCO&lt;sub&gt;2&lt;/sub&gt; threshold'; published in JEB. The primary purpose of this investigation was to test if discontinuous gas exchange cycles (DGCs) were caused by PCO&lt;sub&gt;2&lt;/sub&gt; fluctuations around ventilatory setpoints. Madagascar hissing cockroaches were exposed to normoxic acapnia and treatments of either hypoxic acapnia, and normoxic hypercapnia, while displaying continious gas exchange, and DGCs. Hemolymph PO&lt;sub&gt;2 &lt;/sub&gt;and PCO&lt;sub&gt;2&lt;/sub&gt; were measured in conjunction with ventilatory frequency and VCO&lt;sub&gt;2 &lt;/sub&gt;released. This data displays the changes in ventilatory parameters observed during ambient gas manipulations.&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;This dataset was collected from Madagascar hissing cockroaches displaying continuous gas exchange patterns and discontinuous gas exchange cycles (DGCs). Cockroaches were implanted with oxygen and carbon dioxide optodes and fixed inside of a flow through respirometry setup with their abdomens positioned above an infrared activity detector. Intact cockroaches displaying continuous ventilation were exposed to a 9h treatment of normoxic acapnia, and a 9h treatment of either hypoxic acapnia, or normoxic hypercapnia. Cockroaches were then decerebrated to trigger sustained DGCs and were exposed to the same treatment of manipulated ambient gas tensions. Hemolymph PO&lt;sub&gt;2&lt;/sub&gt; and PCO&lt;sub&gt;2&lt;/sub&gt; fluctuations were measured, along with ventilation frequency, and rate of CO&lt;sub&gt;2&lt;/sub&gt; release. The raw data was recorded onto Labchart software.&lt;/p&gt;

&lt;p&gt;The relevant parameters were identified, and measurements were harvested from the raw ventilatory traces. These measurements were processed into the Mean, SD, and N values which are reported in the uploaded datasheet's 'compiled_data' tab. For ease of comparison, the mean values recorded in the control gas (normoxic acapnia) and the treatment gas (either hypoxic acapnia or normoxic hypercapnia) are paired in univariate scatterplots on the other tabs of the datasheet, alongside scatterplots illustrating the degrees of change.&lt;/p&gt;
description: &lt;b&gt;Usage notes&lt;/b&gt;&lt;br /&gt;&lt;p&gt;Exhaled CO&lt;sub&gt;2&lt;/sub&gt; could not be measured in hypercapnia, and so the cells for these measurements have been blanked out. There are also instances of missing values resulting from equipment error or experimental limitations, in these instances the cells are left empty.&lt;/p&gt;
description: <b>Dryad version number:</b> 3
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/LU0fGOasi2WCZuGJcT53VABsed9B3pNcF3gOJXdlxFg
<b>Storage size:</b> 316737
<b>Visibility:</b> public
DOI: 10.5683/sp3/g32z7e
title: Woodpeckers and other excavators maintain the diversity of cavity-nesting vertebrates

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Woodpeckers and other excavators create most of the holes used by secondary tree-cavity nesting vertebrates (SCNs) in North American temperate mixedwood forests, but the degree to which excavators release SCNs from nest-site limitation is debated. Our goal was to quantify how excavators maintain the diversity and abundance of secondary cavity nesters in a temperate forest through the creation of tree cavities. We examined the short- and long-term (legacy) effects of excavators (principally woodpeckers, but also red-breasted nuthatches and black-capped chickadees) on forest biodiversity using longitudinal monitoring data (1732 nest cavities, 25 sites, 16 years) in British Columbia, Canada. Sites with higher densities of excavator nests had more cavities available, higher species richness of SCNs, and higher nest density of SCNs, indicating the importance of a standing stock of cavities. Years with higher nesting densities of excavators were followed by years with higher SCN diversity, indicating that the creation of nesting opportunities through fresh excavation releases SCNs from community-wide nest-site limitation. We also show that excavators leave a “legacy” of biodiversity (species richness and abundance) at a site by accumulating cavities at rates faster than they become unusable by decay or destruction. By quantifying site-level effects of cavity excavation on the SCN community, our study highlights the key role of excavators as ecosystem engineers that maintain forest wildlife biodiversity. 01-Nov-2021&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;At its most basic level bird nesting data was collected by searching for nests and repeated visits to nests throughout the breeding season at the study area in central British Columbia, Canada from 1995 to 2011. This raw data has been processed to calculate the number of excavators and secondary cavity nestster nests and their species richness. It is this processed data that was used to produced the results of this paper and which is presented here.&lt;/p&gt;
description: <b>Dryad version number:</b> 2
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/xcSUXVwjNsBe2sM55Ouz8FP5R63O8-sZHC234RE0Us0
<b>Storage size:</b> 109705
<b>Visibility:</b> public
DOI: 10.15468/dl.mp25r2
title: Occurrence Download

description: A dataset containing 3278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 7.01978155051684",
 "DecimalLongitude is less than 7.02284110370123",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 3278 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046585-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5683/sp3/8kqwhs
title: Supporting Data for: Salt-fingering in seasonally ice-covered lakes

description: Data used to generate figures in Brine rejection leads to salt-fingers in seasonally ice-covered lakes
description: See Readme.txt
DOI: 10.5683/sp3/qydedh
title: qF3 Analysis Code

description: Provided here: &lt;br&gt;
-Scripts for Performing quantitative Fast FLIM FRET (qF&lt;sup&gt;3&lt;/sup&gt;) Analysis. Organized into folders by steps (1-13) to run for each biological replicate (Step1_Replicate_Analysis) and then for all combined replicates (Step2_CombineReps_Analysis). &lt;br&gt;
-script used to calculate G factor &lt;br&gt; (for which our original data can be provided upon request) &lt;br&gt;
-Example Master platemap. &lt;br&gt;
-LICENSE file for all code here.&lt;br&gt;
-Author: Nehad Hirmiz (Nehad.Hirmiz@gmail.com)&lt;br&gt;&lt;br&gt;
Instructions: &lt;br&gt;
-Download all files here and extract .Zip.&lt;br&gt;
-Install MATLAB Version R2020a with toolboxes:
Signal Processing, Curve Fitting, Image Processing.&lt;br&gt;
-IFF starting with INO FLIM Hyperspectral data * then contact lead for &lt;br&gt;
INO software package including (Release_r10357 package):
INO FHS Acquisition, 
INO_FHS_Analysis,
INO_FHS_Batch Analysis
&lt;br&gt;
-Follow instructions to run these codes:&lt;br&gt;
See associated text at Protocol Exchange: Title: “Automated, quantitative Fast FLIM-FRET (qF&lt;sup&gt;3&lt;/sup&gt;): A step-by-step protocol to measure dissociation constants for protein-protein interactions in live-cell screening applications.”&lt;br&gt;
LINK&lt;br&gt;
https://doi.org/10.21203/rs.3.pex-1354/v1
&lt;br&gt;
And&lt;br&gt;
Instructional videos:&lt;br&gt;
LINK&lt;br&gt;
https://www.youtube.com/playlist?list=PLUiSJrzzg9voe5sjA57oIbfOLAGIrHXRc
DOI: 10.5683/sp3/bi0e66
title: International crime victims surveys

description: &lt;p&gt;The International Crime Victimisation Survey (ICVS) is a far-reaching programme of fully standardized sample surveys looking at householders' experience of crime in different countries. The first ICVS took place in 1989, the second in 1992, the third in 1996 and the fourth in 2000. Surveys have been carried out in 24 industrialized countries since 1989, and in 46 cities in developing countries and countries in transition. Apart from providing an alternative source of data on crime trends, the ICVS offers internationally standardized indicators for the perception and fear of crime across different socioeconomic contexts and over time. It includes the study of corruption, both an objective count of street level corruption" and of the perception of corruption by the general population. Major variable categories include: Car theft, Theft from car, Car vandalism, Theft of motorcycle/moped, Bicycle theft, Burglary, Attempt at burglary, Theft from grages/sheds/lockups, Robbery, Theft of personal property, Sexual offences, Assaults and threats, Consumer fraud, Corruption, Last crime over last five years, Police/prevention/punishment, prevention, Opinions and attitudes, Demographic variables, Why report/no report/no satisfaction&lt;/p&gt;
description: Downloaded from UNICRI ICVS Data/Publications, 2006/10/17 (http://www.unicri.it/services/library_documentation/publications/icvs/data)

All survey years on UNICRI website (https://unicri.it/services/library_documentation/publications/icvs/data/)
description: International crime victims surveys (ICVS)
DOI: 10.5683/sp3/va5hl9
title: Replication Data for: Weed control in processing tomato (Lycopersicon esculentum) with Rimsulfuron and Thifensulfuron applies alone or with Chlorothalonil or copper pesticides

description: The objective of this research were to determine if the addition of a fungicide/bactericide (chlorothalonil or copper hydroxide) to rimsulfuron, thifensulfuron, rimsulfuron plus metribuzin, or thifensulfuron plus metribuzin increased injury to tomato, reduced weed control, and reduced tomato yield.
DOI: 10.5683/sp3/vuuu8x
title: Replication Data for: Effect of Foramsulfuron and Isoxaflutole Residues on Rotational Vegetable Crops

description: The objectives of this study were to determine the potential for foramsulfuron, isoxaflutole alone, and isoxaflutole plus atrazine residues to cause injury to various vegetable crops (cabbage, processing peas, potato, sugar beet, and tomato).
DOI: 10.5683/sp3/qsoqbt
title: Replication Data for: Tolerance of black beans (Phaseolus vulgaris) to soil applications of S-Metolachlor and Imazethapyr

description: The objectives of this research were to determine the tolerance of black beans to S-metolachlor and imazeth- apyr alone and in tank mixture under Ontario growing conditions and to determine if there was a difference in crop tolerance of black beans between the preplant incorporated (PPI) and preemergence (PRE) application timings.
DOI: 10.5683/sp3/xb756a
title: Replication Data for: Competitive size-asymmetry, not intensity, is linked to species loss and gain in a native grassland

description: This is the replication data associated with our article in our "Ecology" titled "Competitive size-asymmetry, not intensity, is linked to species loss and gain in a native grassland". Please see the Metadata excel sheet for details on dataset contents. (2022-02-04)
DOI: 10.5683/sp3/livk1k
title: Major and trace element composition of sublithospheric inclusions in diamond

description: An Excel spreadsheet compiling published major and trace element data for all important sublithospheric (upper mantle, transition zone and lower mantle) inclusion phases in diamond. Major element data are obtained by EPMA, trace element data by SIMS (ion microprobe) and LA-ICPMS. 
For additional details, please refer to Chapter 7: Geochemistry of Silicate and Oxide Inclusions in Sublithospheric Diamonds by Walter et al. in the RiMG volume "Diamond - Genesis, Mineralogy, and Geochemistry ", https://doi.org/10.2138/rmg.2022.88.07
DOI: 10.5683/sp3/sfoipj
title: Replication Data for: Tolerance of cranberry beans (Phaseolus vulgaris) to post emergence herbicides

description: The objective of this research was to determine the tolerance of black beans and cranberry beans to POST applications of bentazon, bentazon plus fomesafen, and imazamox plus fomesafen for possible registration in Ontario.
DOI: 10.5683/sp3/k0tho7
title: Data & code for Hardouin & Hargreaves (2023) Mapping nationally- and globally-at-risk species to identify hotspots for (and gaps in) conservation
title: Proceedings of the Royal Society of London B, https://doi.org/10.1098/rspb.2022.2307

description: We compile range maps of terrestrial species-at-risk in Canada to assess the geographic overlap of nationally-at-risk and globally-at-risk species with each other, among taxonomic groups, and with protected areas. R code and required csv's for all analyses after maps are compiled. 
See metadata for workflow
DOI: 10.5683/sp3/tspboc
title: Replication Data for: Weed control, environmental impact and profitability with glyphosate tank mixes in glyphosate-tolerant corn

description: The objective of this research was to evaluate different glyphosate tank mixes applied POST for weed control efficacy, environmental impact, yield, and profitability in glyphosate-tolerant corn.
DOI: 10.5683/sp3/89obxy
title: Données pour : Analyse de cadrage de la reformulation des politiques en matière de cannabis au Québec, en Ontario et au Maine

description: Ce jeu de données présente les résultats d'une analyse de cadrage (framing analysis) de la reformulation des politiques en matière de cannabis au Québec (projet de loi 2, 2019), en Ontario (projet de loi 36, 2018) et au Maine (LD 88, 2016; LD 243, 2017; LD 1719, 2018). À l'aide d'une grille d'analyse composée de 6 cadres développée par le chercheur, les débats parlementaires et les mémoires déposés en commission ont été analysés. Au total, 80 types d'intervenants ont été soumis au codage (23 au Québec ; 19 en Ontario ; 37 au Maine ; total). Ce jeu de données permet de cerner les cadrages prévalant lors des débats sur la reformulation des politiques en matière de cannabis.
description: NVivo, 12
DOI: 10.5683/sp3/u5jaw8
title: Factors related to research productivity for academic librarians - survey instrument and data

description: Survey instrument, data dictionary, and raw data