cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/r8vtx3w4h9.1
title: TorchQC - A framework for efficiently integrating machine and deep learning methods in quantum dynamics and control

description: Machine learning has been revolutionizing our world over the last few years and is also increasingly exploited in several areas of physics, including quantum dynamics and control. The need for a framework that brings together machine learning models and quantum simulation methods has been quite high within the quantum control field, with the ultimate goal of exploiting these powerful computational methods for the efficient implementation of modern quantum technologies. The existing frameworks for quantum system simulations, such as QuTip and QuantumOptics.jl, even though they are very successful in simulating quantum dynamics, cannot be easily incorporated into the platforms used for the development of machine learning models, like for example PyTorch. The TorchQC framework introduced in the present work comes exactly to fill this gap. It is a new library written entirely in Python and based on the PyTorch deep learning library. PyTorch and other deep learning frameworks are based on tensors, a structure that is also used in quantum mechanics. This is the common ground that TorchQC utilizes to combine quantum physics simulations and deep learning models. TorchQC exploits PyTorch and its tensor mechanism to represent quantum states and operators as tensors, while it also incorporates all the tools needed to simulate quantum system dynamics. All necessary operations are internal in the PyTorch library, thus TorchQC programs can be executed in GPUs, substantially reducing the simulation time. We believe that the proposed TorchQC library has the potential to accelerate the development of deep learning models directly incorporating quantum simulations, enabling the easier integration of these powerful techniques in modern quantum technologies.
DOI: 10.17632/ws4ws8mbr3.1
title: Ab initio study of the conductivities of B2 FeSi under core-mantle boundary conditions

description: Raw data of 'Ab initio study of the conductivities of B2 FeSi under core-mantle boundary conditions'.
DOI: 10.17632/ck7mhf82br.1
title: A detailed quantification of larval zebrafish behavioral repertoire uncovers principles of hunting behavior

description: A draft for a manuscript
DOI: 10.17632/ck7mhf82br.2
title: A detailed quantification of larval zebrafish behavioral repertoire uncovers principles of hunting behavior

description: A draft for a manuscript
DOI: 10.17632/vw8k79tmr6.1
title: DWR-drag: A new generation software for the double wall-ring interfacial shear rheometer's data analysis

description: The double wall-ring (DWR) rotational configuration is nowadays the instrument of choice regarding interfacial shear rheometers (ISR) in rotational configurations. Complex numerical schemes must be used in the analysis of the output data in order to appropriately deal with the coupling between interfacial and bulk fluid flows, and to separate viscous and elastic contribution or the interfacial response. We present a second generation code for analyzing the interfacial shear rheology experimental results of small amplitude oscillatory measurements made with a DWR rotational rheometer. The package presented here improves significantly the accuracy and applicability range of the previous available software packages by implementing: i) a physically motivated iterative scheme based on the probe's equation of motion, ii) an increased user selectable spatial resolution, and iii) a second order approximation for the velocity gradients at the ring surfaces. Moreover, the optimization of the computational effort allows, in many cases, for on-the-fly execution during data acquisition in real experiments.
DOI: 10.6073/pasta/7ba35a0a5f23fd0fcc7039187a0fbd91
title: North Temperate Lakes LTER: Pelagic Prey - Sonar Data 2001 - current

description: Total pelagic fish abundance data were collected annually in mid-summer (following stratification) using hydroacoustic surveys along a set of transects in each of eight lakes (Allequash, Big Muskellunge, Crystal, Sparkling, Trout, Mendota, Monona, and Fish), from 1981-1999 (Lakes Monona and Fish from 1995). Hydroacoustic data were not collected in 2000, but collection resumed in 2001 on Crystal, Sparkling, and Trout and continues to the present (with the exception of Crystal in 2004). In 2005, Lake Mendota was included in the annual sampling rotation. This dataset includes data from lakes Crystal, Sparkling, Trout and Mendota from 2001 through present. Lake Mendota was not surveyed in 2020 due to COVID-19. Big Muskellunge Lake was included back into the sampling rotation in 2020 and continues to be surveyed annually.
 Sonar data represent 1) species-specific whole lake density estimates and average length (target strength (dB)); 2) depth-stratified (1m) species-specific density estimates and average length by 200m transects; and 3) individual depth-specific target length (not assigned to species).
 Dataset names for the aforementioned are below.
 1) North Temperate Lakes LTER: Pelagic Prey Whole Lake Density - Sonar Data
 2) North Temperate Lakes LTER: Pelagic Prey Interval Density - Sonar Data
 3) North Temperate Lakes LTER: Pelagic Prey Single Target - Sonar Data
 Although rare, large targets representing predatory species were excluded from the density estimation for pelagic prey species (when n&lt;3 were caught in vertical gillnets) using the proportion of large targets identified during single target analysis on each lake. Pelagic fish densities for lakes Sparkling, Crystal, Big Muskellunge, and Mendota are for the entire basin of each lake. The data shown for Trout Lake represent densities in the south basin only. Number of current sites: 5
DOI: 10.17632/hmsxg82vnf.1
title: A universal implementation of radiative effects in neutrino event generators

description: Due to the similarities between electron-nucleus (eA) and neutrino-nucleus scattering (νA), eA data can contribute key information to improve cross-section modeling in eA and hence in νA event generators. However, to compare data and generated events, either the data must be radiatively corrected or radiative effects need to be included in the event generators. We implemented a universal radiative corrections program that can be used with all reaction mechanisms and any eA event generator. Our program includes real photon radiation by the incident and scattered electrons, and virtual photon exchange and photon vacuum polarization diagrams. It uses the “extended peaking” approximation for electron radiation and neglects charged hadron radiation. This method, validated with GENIE, can also be extended to simulate νA radiative effects. This work facilitates data-event-generator comparisons used to improve νA event generators for the next-generation of neutrino experiments.
DOI: 10.17909/xyzm-1c71
title: Data for GM Aur MIRI-MRS Paper
DOI: 10.17632/cxmzw5c5fr.1
title: Data for: How marine snow shapes bacterial growth and mortality in the face of ocean warming

description: 1. Combined modified dilution data (growth and mortality rates) of bacteria, synechococcus, and picoeukaryotes of all experimental conditions.
2. Bacterial and viral abundance before and after vortex.
3. Modified dilution in situ -MS
4. Modified dilution warming +MS
5. Modified dilution in situ -MS
6. Modified dilution warming +MS
7. Data for figure 1A-D
8. Data for figure 1E and table 1
9. Data for figure 2
DOI: 10.17632/59jy9zpcjz.1
title: Cell Formation Cell layout and scheduling problem

description: Speed of robots (r and f value) /2/
Clearence between machines (G value)/1/

In these instances, the number of machines is set to 3, 7, 10, 15 and 20 respectively. A file is given for each machine.


Since these instances involve the different types of combinations (the number of machines, parts, routes and cells), they can be simply named intuitively. For example, the instance "3M5P2R2C" means that there are 3 machines, 5 parts, 2 routes and 2 cells. 2 test problems are generated for each properties. The instances with "3M5P2R2C'" is the second test problem for the related properties. 

In test problems, there has been 7 sheets. Sheet 1 is the O_(p,r) parameter. Sheet 2 is routes of parts considering the number of routes. For example, if there has been 2 routes the first row is the first route of part 1 and second row is the second route of part 1. Sheet 3 is the Cx_m and Cy_m values. Sheet 4 is the P_(p,r,s,m) values. Sheet 5 is the FL and FW values. Sheet 6 is for r and f values. Finally sheet 7 is the clearence value. 

102 test problems are generated.
DOI: 10.17632/k7d7xmdy4y.2
title: Growing the Efficient Frontier on Panel Trees

description: R package for Panel Tree method and replication file for the paper "Growing the Efficient Frontier on Panel Trees", forthcoming in the Journal of Financial Economics.

Please read the files "README.md" and "./replication-JFE/README-replication.md" for detailed description.
DOI: 10.17632/p9pmmsytfx.1
title: Human_learns_from_dog

description: Data belong to an experiment, where human participants (dog owners) could observe a skilled dog, or human demonstrator in a detour task. Then, human participants could solve the task, too. We tested whether they copy or not the demonstrators. 
"Key" sheet shows explanation to the variables.
DOI: 10.17632/k7d7xmdy4y.1
title: Growing the Efficient Frontier on Panel Trees

description: R package for Panel Tree method and replication file for the paper "Growing the Efficient Frontier on Panel Trees", forthcoming in the Journal of Financial Economics.

Please read the files "README.md" and "./replication-JFE/README-replication.md" for detailed description.
DOI: 10.17632/gz2fgbkw4c.1
title: fatty_DM

description: MetabMetabolic Risk Factors and Hepatocellular Carcinoma in Fatty Liver Disease
DOI: 10.17632/mwdnt6gzcn.1
title: Origin of coeval shoshonitic and calc-alkaline rocks from the metasomatized lithospheric mantle

description: We present zircon U-Pb isotopic age (Table 1, TableS2, TableS3) and Hf isotopic composition (Table S4), clinopyroxene chemistry (Table S5, Table S6), and whole-rock elemental and Sr-Nd-Pb-Mg isotopic compositions (Table S1) of the Cenozoic Zhuopan alkaline complex in the Tethyan orogenic belt, western Yunnan. On the basis of the analytical results, we observed distinct major and trace element compositions, and slight variations in whole-rock Sr-Nd-Pb-Mg and zircon Hf isotopic compositions in coeval shoshonitic and calc-alkaline rocks, suggesting the different melting models and magma sources. This study reveals the potential composition of the lithospheric mantle beneath the southeastern Tibetan Plateau， and the regional decompression of mantle and upwelling of the asthenosphere, induced by reactivation of giant shear zones, played a critical role in the formation of the Cenozoic alkaline magmatism along the southeastern margin of the Tibetan Plateau.
DOI: 10.17632/w3g68dj4d9.4
title: Revisiting the centrality definition and observable centrality dependence of relativistic heavy-ion collisions in PACIAE model

description: We improve the centrality definition in impact parameter in PACIAE model responding the fact reported by the ALICE, ATLAS, and CMS collaborations that the maximum impact parameter in heavy ion collisions should be extended to 20 fm. Meanwhile the PACIAE program is updated to a new version of PACIAE 2.2.2 with convenience of studying the elementary nuclear collisions, proton-nucleus collisions, and the nucleus-nucleus collisions in one unified program version. The new impact parameter definition together with the optical Glauber model calculated impact parameter bin, N_part, and N_coll in proton-nucleus and nucleus-nucleus collisions at relativistic energies are consistent with the improved MC-Glauber model ones within the error bar. The charged-particle pseudorapidity and the transverse momentum distributions in Pb-Pb collisions at $\sqrt{s_NN}$ = 5.02 TeV simulated by PACIAE 2.2.2 well reproduce the ALICE experimental data.
DOI: 10.17632/ggvc9r6cc2.1
title: Phytochemical and mineral composition, safety and ameliorative potential of aqueous leaf of Prunus africana on pain, fever and inflammation.

description: This study evaluated the antipyretic, analgesic and anti-inflammatory activities and safety of P. africana. For the antipyretic activity, 36 rats were used in six treatment groups (n=6) where fever was induced by turpentine injection then one hour later rectal temperatures were measured. Those that had an increase of 0.8 from initial temperature were considered pyretic and given various treatments. Temperature values were recorded for each treatment groups from time zero to the fourth hour. For analgesic and anti-inflammatory activities mice were used. Pain was induced by formalin and was evaluated by time spend in paw licking in seconds between zero to five minutes and fifteen to thirty minutes after formalin injection on the left hind paw. Inflammatory activity was evaluated by paw edema from formalin injection in the hind paw. The paw diameter was measured in mm from time zero to the third hour. For antipyretic activity, P. africana reduced temperature in all doses (50, 100 and 150 mg/kg body weight) similarly between the hour intervals. All the doses reduced temperature from the zero hour to the second hour. The temperature remained similar in hours 3 and 4 as that in the second hour . By the fourth hour the temperatures had reduced to the same level as those in the normal control. All the doses reduced fever similar to the positive control (diclofenac). For anti-inflammatory activity, P. africana reduced paw edema in only two doses (50 and 100 mg/kg body weight) similarly between the hour intervals. These doses reduced temperature from the zero hour to the first hour. The reduction of paw edema remained similar in hours 2 and 3 as that in the first hour . By the third hour the edema had reduced to the same level as those in the normal control. The two doses reduced fever similar to the positive control (diclofenac). Dose 150 mg/kg body weight of P. africana did not show any change in paw edema from zero hour to the third hour. This shows P. africana has anti-inflammatory activities at only doses 50 and 100 mg/kg bw. For analgesic activities was compared to the negative control. P. africana at all doses displayed a low inhibition of pain in the early phase, meaning they had low centrally acting phytochemicals. This was similar to diclofenac. But at late phase dose 50 (similar to that of normal control) and 100 mg/kg body weight had activities higher than that at dose 150 mg/kg body weight and diclofenac. This means P. africana contain high concentrations of peripheral acting phytochemicals of pain. This shows dose of 50 mg/kg bw of P. africana works better for managing pain. P. africana caused hepatotoxicity at doses 260 and 450 mg/kg bw.
DOI: 10.17632/w3g68dj4d9.1
title: Announcement for the replacement of the PACIAE 2.1 and PACIAE 2.2 series

description: We replace the old PACIAE 2.1 and PACIAE 2.2 program series with new ones, respectively. In the new program series, the method of creation of the partonic initial state is changed, an option for calling PYEVNT or PYEVNW in PYTHIA is added, and the few bugs in the calculation for the reduction of strange quark suppression are corrected. Previous versions of this program (AEKI_v2_0 and AEKI _v2_2) may be found at http://dx.doi.org/10.1016/j.cpc.2012.12.026 and http://dx.doi.org/10.1016/j.cpc.2015.01.022 respectively.
DOI: 10.17632/w3g68dj4d9.5
title: A brief introduction to PACIAE 4.0

description: Parton And-hadron China Institute of Atomic Energy (PACIAE) is a multipurpose Monte Carlo event generator developed to describe a wide range of high-energy collisions, including lepton-lepton, lepton-hadron, lepton-nucleus, hadron-hadron, hadron-nucleus, and nucleus-nucleus collisions. It is built based on the PYTHIA program, and incorporates parton and hadron cascades to address the nuclear medium effects. PACIAE 4.0 is the new generation of PACIAE model surpassing the version 3.0. In PACIAE 4.0, the old fixed-format FORTRAN 77 code has been refactored and rewritten by the free-format modern Fortran and C++ languages. The C++-based PYTHIA 8.3 is interfaced in, while previous versions connected to the Fortran-based PYTHIA 6.4 only. Several improvements are also introduced, which enable PACIAE 4.0 to contain more physics and features to model the high-energy collisions. This is the first attempt to transition PACIAE from Fortran to C++.
DOI: 10.15468/dl.mcr5ha
title: Occurrence Download

description: A dataset containing 712903 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Achnatherum hymenoides (Roem. & Schult.) Barkworth, Achnatherum hymenoides (Roem. & Schult.) Barkworth, Apis mellifera Linnaeus, 1758, Aquilegia coerulea James, Ariolimax columbianus (A.Gould, 1851), Berberis aquifolium Pursh, Boletus edulis Bull., Bouteloua gracilis (Kunth) Lag. ex Griffiths, Bouteloua gracilis (Kunth) Lag. ex Griffiths, Calochortus nuttallii Torr., Cantharellus californicus D.Arora & Dunham, Cantharellus formosus Corner, Cantharellus formosus Corner, Eschscholzia californica Cham., Lewisia rediviva Pursh, Myosotis alpestris F.W.Schmidt, Nassella pulchra (Hitchc.) Barkworth, Pepsis thisbe Lucas, 1895, Philadelphus lewisii Pursh, Pseudoroegneria spicata (Pursh) Á.Löve, Pseudoroegneria spicata (Pursh) Á.Löve, Yucca glauca Nutt., Oncorhynchus tshawytscha (Walbaum, 1792), Oncorhynchus apache (Miller, 1972), Oncorhynchus tshawytscha (Walbaum, 1792), Oncorhynchus mykiss (Walbaum, 1792), Oncorhynchus clarkii (Richardson, 1836), Oncorhynchus clarkii (Richardson, 1836), Oncorhynchus clarkii (Richardson, 1836), Oncorhynchus clarkii (Richardson, 1836), Oncorhynchus clarkii (Richardson, 1836), Oncorhynchus tshawytscha (Walbaum, 1792), Oncorhynchus clarkii (Richardson, 1836), Oncorhynchus mykiss (Walbaum, 1792), Oncorhynchus clarkii (Richardson, 1836))",
 "Country is one of (United States of America, Canada)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 712903 records from 461 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010796-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8r7jdn
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((97.52 21.13,106.18 21.13,106.18 29.25,97.52 29.25,97.52 21.13))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Machilus dumicola"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014935-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3q4g5
title: Occurrence Download

description: A dataset containing 4008 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vaccinium smallii"
 ]
}

 The dataset includes 4008 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014933-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hz7h4p
title: Occurrence Download

description: A dataset containing 1302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tracheophyta)",
 "Geometry POLYGON ((11.14642 49.7034, 11.16642 49.7034, 11.16642 49.7234, 11.14642 49.7234, 11.14642 49.7034))"
 ]
}

 The dataset includes 1302 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014934-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzdxks
title: Occurrence Download

description: A dataset containing 8616892 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squamata",
 "Year 1926-2025"
 ]
}

 The dataset includes 8616892 records from 7559 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014875-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15485/2407117
title: Soil carbon, nitrogen, and ice content data (2014-2018) at Happy Valley and Sagwon Hills in Northern Alaska, United States

description: This dataset contains three data files from soil data collected by sampling soil cores and pits across a toposequence on two hillslopes in permafrost affected soils in Northern Alaska, USA. Soil cores and profiles were excavated to 3m or until auger refusal. Samples were collected by genetic soil horizons for laboratory analysis and organized into complete soil profiles ordered depth. Soil carbon, nitrogen, and ice stocks (stocks_by_core.csv) were calculated from the core dataset . Data for mean values by depth increments (20,50,100,150,200 cm) of total soc, total nitrogen, bulk density, and ice content were determined and made available in this dataset (soc-tn-bd-ice-slab_tables.csv). Stocks by site are included in a separate file (stocks_by_site.csv). Each of these three files also has an associated data dictionary file (stocks_by_core_dd.csv, soc-tn-bd-ice-slab_tables_dd.csv, stocks_by_site_dd.csv). Finally, an FLMD file is also included (FLMD_Happy_Valley_Sagwon.csv).
DOI: 10.15468/dl.pj7paq
title: Occurrence Download

description: A dataset containing 954 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Australia",
 "Geometry POLYGON((508.2654 -21.43036,508.91999 -21.43036,508.91999 -20.96997,508.2654 -20.96997,508.2654 -21.43036))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Carabidae"
 ]
}

 The dataset includes 954 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057435-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kf6rfn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.596327 -33.155263, 148.596327 -33.159754, 148.598573 -33.159754, 148.598573 -33.164246, 148.603065 -33.164246, 148.603065 -33.166492, 148.598573 -33.166492, 148.598573 -33.170983, 148.607556 -33.170983, 148.607556 -33.173229, 148.605311 -33.173229, 148.605311 -33.177721, 148.618785 -33.177721, 148.618785 -33.164246, 148.614294 -33.164246, 148.614294 -33.159754, 148.612048 -33.159754, 148.612048 -33.157508, 148.598573 -33.157508, 148.598573 -33.155263, 148.596327 -33.155263), (148.614294 -33.164246, 148.614294 -33.166492, 148.607556 -33.166492, 148.607556 -33.164246, 148.614294 -33.164246))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057436-240626123714530/datasets/export for details.
DOI: 10.15468/dl.5ygun9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.621031 -33.166492, 148.621031 -33.170983, 148.625523 -33.170983, 148.625523 -33.173229, 148.634506 -33.173229, 148.634506 -33.170983, 148.630014 -33.170983, 148.630014 -33.166492, 148.621031 -33.166492)), ((148.634506 -33.173229, 148.634506 -33.177721, 148.641243 -33.177721, 148.641243 -33.173229, 148.634506 -33.173229)), ((148.641243 -33.173229, 148.643489 -33.173229, 148.643489 -33.170983, 148.641243 -33.170983, 148.641243 -33.173229)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057437-240626123714530/datasets/export for details.