cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2h5gy3
title: CCDC 2299175: Experimental Crystal Structure Determination

description: Related Article: Isabelle M. Jones, Gemma F. Turner, Kari Pitts, Rees Powell, Alan Riboldi-Tunnicliffe, Rachel Williamson, Stephanie Boer, Lauren Allen, Stephen A. Moggach|2023|CrystEngComm|25|6533|doi:10.1039/D3CE00979C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h5gz4
title: CCDC 2299176: Experimental Crystal Structure Determination

description: Related Article: Isabelle M. Jones, Gemma F. Turner, Kari Pitts, Rees Powell, Alan Riboldi-Tunnicliffe, Rachel Williamson, Stephanie Boer, Lauren Allen, Stephen A. Moggach|2023|CrystEngComm|25|6533|doi:10.1039/D3CE00979C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h7799
title: CCDC 2300860: Experimental Crystal Structure Determination

description: Related Article: Pavel A. Shelyganov, Mehdi Elsayed Moussa, Michael Seidl, Lisa Zimmermann, Wagner Menezes da Silva, Manfred Scheer|2023|Dalton Trans.|52|18137|doi:10.1039/D3DT03490A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24796179
title: Análisis de tópicos

description: Análisis de tópicos del artículo en cuestión.
DOI: 10.6084/m9.figshare.24796179.v1
title: Análisis de tópicos

description: Análisis de tópicos del artículo en cuestión.
DOI: 10.5281/zenodo.10367137
title: Analyzing marine biofilms developed on carbon nanotube-modified surfaces by 3D OCT approach

description: Glass, epoxy resin, and carbon nanotubes (CNT) composite were analyzed regarding wettability by water contact angle measurement, and roughness by atomic force microscopy. Cyanobacterial biofilms formed by Nodosilinea cf. nodulosa LEGE 10377 were developed on these surfaces for seven weeks and under controlled hydrodynamic conditions. Biofilm wet weight and structural parameters such as biofilm thickness, contour coefficient, biovolume, porosity, and average size of non-connected pores obtained from Optical Coherence Tomography (OCT) were assessed.
DOI: 10.5281/zenodo.10367138
title: Analyzing marine biofilms developed on carbon nanotube-modified surfaces by 3D OCT approach

description: Glass, epoxy resin, and carbon nanotubes (CNT) composite were analyzed regarding wettability by water contact angle measurement, and roughness by atomic force microscopy. Cyanobacterial biofilms formed by Nodosilinea cf. nodulosa LEGE 10377 were developed on these surfaces for seven weeks and under controlled hydrodynamic conditions. Biofilm wet weight and structural parameters such as biofilm thickness, contour coefficient, biovolume, porosity, and average size of non-connected pores obtained from Optical Coherence Tomography (OCT) were assessed.
DOI: 10.6084/m9.figshare.24796203
title: Análisis de comentarios

description: Análisis de comentarios a las publicaciones de Facebook.
DOI: 10.6084/m9.figshare.24796203.v1
title: Análisis de comentarios

description: Análisis de comentarios a las publicaciones de Facebook.
DOI: 10.57967/hf/1462
title: code-education
DOI: 10.6084/m9.figshare.24796230
title: Análisis total.

description: Análisis total de publicaciones en cuanto universo y muestra.
DOI: 10.6084/m9.figshare.24796230.v1
title: Análisis total.

description: Análisis total de publicaciones en cuanto universo y muestra.
DOI: 10.6073/pasta/273fc64764c76b91217891864162b7f0
title: PIE LTER YSI EXO2 sonde 15-minute interval water quality measurements of water column temperature, salinity, oxygen, pH, algae, fluorescent dissolved organic matter, turbidity, and depth at four sites in the Plum Island Estuary in year 2023.

description: Four YSI EXO2 water quality sondes were deployed from May 2023 to October 2023 at four sites in the Plum Island Estuary. One was at the mouth of the sound at the Ipswich Bay Yacht Club, one in the Rowley River, and two in the Parker River. The sondes measured water column temperature, salinity, oxygen, pH, algae, organic matter, turbidity, and depth in 15-minute intervals.
DOI: 10.5281/zenodo.8406637
title: HiPACE++ input scripts for "Emittance-preserving acceleration of high-quality positron beams using warm plasma filaments"

description: This dataset presents the HiPACE++ input scripts required to re-create the data of the figures in the article "Emittance-preserving acceleration of high-quality positron beams using warm plasma filaments"
DOI: 10.5281/zenodo.8406638
title: HiPACE++ input scripts for "Emittance-preserving acceleration of high-quality positron beams using warm plasma filaments"

description: This dataset presents the HiPACE++ input scripts required to re-create the data of the figures in the article "Emittance-preserving acceleration of high-quality positron beams using warm plasma filaments"
DOI: 10.5281/zenodo.10367202
title: RDP Classifier 2.14 and the RDP bacterial and archaeal taxonomy training set No. 19

description: RDP Classifier 2.14 (August 2023) Release Note:
The Bacteria and Archaea hierarchy model used by RDP Classifier has been updated to training set No. 19. The new version has over 600 genera and 2500 species added since last version No. 18 released in July 2020. The information that is used to update the RDP taxonomy to training set version No. 19, and RDP Classifier version 2.14 came from publicly available scientific articles and public sequence repository, mostly from International Journal of Systematic and Evolutionary Microbiology (IJSEM), the All-Species Living Tree Project (LTP) and GenBank.  
It is worth noting that most of the phyla have new names, according to article "
Oren A, Garrity GM. Valid publication of the names of forty-two phyla of prokaryotes. Int J Syst Evol Microbiol. 2021 Oct;71(10). doi: 10.1099/ijsem.0.005056. PMID: 34694987."
In addition to the files to train and run the RDP Classifier, new file formats are made available to accommodate the needs of users:
1. A new file trainset19_072023_speciesrank.fa has been added to the release in RDPClassifier_16S_trainsetNo19_rawtrainingdata.zip. This file is NOT needed to train the classifier. In addition to sequences, it contains genus, species, strain, type status and taxonomy rank, which are useful for closest species identification using third-party tools (e.g. BLAST).
2. Two new files in RDPClassifier_16S_trainsetNo19_QiimeFormat.zip to retrain the RDP Classifier included in Qiime2 package.
DOI: 10.5281/zenodo.10367203
title: RDP Classifier 2.14 and the RDP bacterial and archaeal taxonomy training set No. 19

description: RDP Classifier 2.14 (August 2023) Release Note:
The Bacteria and Archaea hierarchy model used by RDP Classifier has been updated to training set No. 19. The new version has over 600 genera and 2500 species added since last version No. 18 released in July 2020. The information that is used to update the RDP taxonomy to training set version No. 19, and RDP Classifier version 2.14 came from publicly available scientific articles and public sequence repository, mostly from International Journal of Systematic and Evolutionary Microbiology (IJSEM), the All-Species Living Tree Project (LTP) and GenBank.  
It is worth noting that most of the phyla have new names, according to article "
Oren A, Garrity GM. Valid publication of the names of forty-two phyla of prokaryotes. Int J Syst Evol Microbiol. 2021 Oct;71(10). doi: 10.1099/ijsem.0.005056. PMID: 34694987."
In addition to the files to train and run the RDP Classifier, new file formats are made available to accommodate the needs of users:
1. A new file trainset19_072023_speciesrank.fa has been added to the release in RDPClassifier_16S_trainsetNo19_rawtrainingdata.zip. This file is NOT needed to train the classifier. In addition to sequences, it contains genus, species, strain, type status and taxonomy rank, which are useful for closest species identification using third-party tools (e.g. BLAST).
2. Two new files in RDPClassifier_16S_trainsetNo19_QiimeFormat.zip to retrain the RDP Classifier included in Qiime2 package.
DOI: 10.57967/hf/1463
title: code-construction-habitation
DOI: 10.57967/hf/1464
title: code-mutualite
DOI: 10.5281/zenodo.10367539
title: The potential of graphene oxide surfaces to reduce biofilms formed by uropathogens

description: Polydimethylsiloxane (PDMS), 5 wt.% GNP/PDMS (GNP/PDMS), 1 wt.% graphene oxide (GO)/PDMS (GO1/PDMS), 3 wt.% GO/PDMS (GO3/PDMS), 5 wt.% GO/PDMS (GO5/PDMS)) were analyzed regarding hydrophobicity and roughness. Staphylococcus aureus and Pseudomonas aeruginosa biofilms were developed on these different surfaces under static conditions for 24h at 37°C. The number of biofilm total and culturable cells was quantified by flow cytometry and plate counts, respectively, whereas the biofilm amount was determined by crystal violet staining. Moreover, the mechanisms of action of GO were characterized using the flow cytometer.
DOI: 10.5281/zenodo.10367538
title: The potential of graphene oxide surfaces to reduce biofilms formed by uropathogens

description: Polydimethylsiloxane (PDMS), 5 wt.% GNP/PDMS (GNP/PDMS), 1 wt.% graphene oxide (GO)/PDMS (GO1/PDMS), 3 wt.% GO/PDMS (GO3/PDMS), 5 wt.% GO/PDMS (GO5/PDMS)) were analyzed regarding hydrophobicity and roughness. Staphylococcus aureus and Pseudomonas aeruginosa biofilms were developed on these different surfaces under static conditions for 24h at 37°C. The number of biofilm total and culturable cells was quantified by flow cytometry and plate counts, respectively, whereas the biofilm amount was determined by crystal violet staining. Moreover, the mechanisms of action of GO were characterized using the flow cytometer.
DOI: 10.5281/zenodo.10367378
title: Optimally interpolated dissolved oxygen based on the World Ocean Database 2018 and CMIP6 models

description: Optimal interpolation of observed and modeled dissolved oxygen data from WOD18 and CMIP6. Technical details are provided in the publication (Ito et al., 2023). 
Ito, T., Garcia, H. E., Wang, Z., Minobe, S., Long, M. C., Cebrian, J., Reagan, J., Boyer, T., Paver, C., Bouchard, C., Takano, Y., Bushinsky, S., Cervania, A., and Deutsch, C. A.: Underestimation of global O2 loss in optimally interpolated historical ocean observations, Biogeosciences Discuss. [preprint], https://doi.org/10.5194/bg-2023-72, in review, 2023.
DOI: 10.5281/zenodo.10359055
title: Mirrorlab - Nolli Base map

description: Geojson polygon of Giovan Battista Nolli (1692-1756) "La Pianta Grande di Roma", mapped by Dr. Paolo Rosati and related in the 2023, the map is spatially joined with the "Interactive Nolli Map Website 2.0" points dataset made by "Tile, James et Al., Interactive Nolli Map Website, 2021  https://web.stanford.edu/group/spatialhistory/nolli/ from the "Export" section, freely available at: https://web.stanford.edu/group/spatialhistory/nolli/ from the "Export" section.Pay attention mandatory to cite for use the dataset:- For the Nolly Polygon layer cite: Paolo Rosati, Nolli Map dataset for Mirrorlab project, 2023. DOI 10.5281/zenodo.10359055- For the polygon information and the points contained in the geojson cite:Tile, James et Al. The interactive Nolli Map Website, 2021 https://web.stanford.edu/group/spatialhistory/nolli/ from the "Export" section.To cite the plain acknowledgment of the Interactive Nolli Map Website 2.0 :Project directed by: - James TiceProfessor of Architecture, University of OregonPrincipals- Nicola CamerlenghiAssociate Professor of Art History, Dartmouth College- Erik SteinerCo-Director Spatial History Project, Stanford University- Giovanni SvevoArchaeologist, Cartographer, DH Specialist- Allan CeenDirector, Studium UrbisDesign, Cartography & Web DevelopmentGiovanni SvevoArchaeologist, Cartographer, DH SpecialistThe full acknowledgment is available at going on the same site click "about" and "acknowledgment".The polygons was obtained by digitize the WMS file at disposal by the same project:
Nolli, Giambattista, approximately 1692-1756. (2021). La Pianta Grande di Roma (Raster Image). [GeoTIFF]. Stanford University. Center for Spatial and Textual Analysis. Retrieved from https://earthworks.stanford.edu/catalog/stanford-nn217br6628The use use of this data are made for study and research only. The current dataset is downloadable fo free under CC-BY SA NC 4.0 license.
DOI: 10.5281/zenodo.10359054
title: Mirrorlab - Nolli Base map

description: Geojson polygon of Giovan Battista Nolli (1692-1756) "La Pianta Grande di Roma", mapped by Dr. Paolo Rosati and related in the 2023, the map is spatially joined with the "Interactive Nolli Map Website 2.0" points dataset made by "Tile, James et Al., Interactive Nolli Map Website, 2021  https://web.stanford.edu/group/spatialhistory/nolli/ from the "Export" section, freely available at: https://web.stanford.edu/group/spatialhistory/nolli/ from the "Export" section.Pay attention mandatory to cite for use the dataset:- For the Nolly Polygon layer cite: Paolo Rosati, Nolli Map dataset for Mirrorlab project, 2023. DOI 10.5281/zenodo.10359055- For the polygon information and the points contained in the geojson cite:Tile, James et Al. The interactive Nolli Map Website, 2021 https://web.stanford.edu/group/spatialhistory/nolli/ from the "Export" section.To cite the plain acknowledgment of the Interactive Nolli Map Website 2.0 :Project directed by: - James TiceProfessor of Architecture, University of OregonPrincipals- Nicola CamerlenghiAssociate Professor of Art History, Dartmouth College- Erik SteinerCo-Director Spatial History Project, Stanford University- Giovanni SvevoArchaeologist, Cartographer, DH Specialist- Allan CeenDirector, Studium UrbisDesign, Cartography & Web DevelopmentGiovanni SvevoArchaeologist, Cartographer, DH SpecialistThe full acknowledgment is available at going on the same site click "about" and "acknowledgment".The polygons was obtained by digitize the WMS file at disposal by the same project:
Nolli, Giambattista, approximately 1692-1756. (2021). La Pianta Grande di Roma (Raster Image). [GeoTIFF]. Stanford University. Center for Spatial and Textual Analysis. Retrieved from https://earthworks.stanford.edu/catalog/stanford-nn217br6628The use use of this data are made for study and research only. The current dataset is downloadable fo free under CC-BY SA NC 4.0 license.
DOI: 10.3886/e136321v1-143719
title: Data and Code for: "Placebo Tests" for the Impacts of Air Pollution on Health: The Challenge of Limited Healthcare

description: "Placebo
tests" are normally used to support evidence of the pollution impacts on
health outcomes. In this study, we argue that one should be cautious to proceed
with falsification tests. We examine how a large metropolitan area in Brazil
copes with increased healthcare demand due to high air pollution (PM10) under
hospital capacity constraints. Using wind as an instrument, we find that the
pollution exposure increases pediatric hospitalization for respiratory
diseases, while the number of planned procedures decreases in public hospitals.
On average, for every four additional pollution-related admissions, one
elective care procedure is displaced. Urgent procedures are not displaced.
description: Districts in the Sao Paulo Metropolitan Area close to the monitors that measure air pollution
description: Districts in the Sao Paulo Metropolitan Area.
DOI: 10.5281/zenodo.7888019
title: Dataset - A First Look at Fairness of Automatic Code Reviewer Recommendation

description: This dataset is used in the experiments in the paper "A First Look at Fairness of Automatic Code Reviewer Recommendation."
DOI: 10.5281/zenodo.10076549
title: Constituency Database

description: CCBD
DOI: 10.5281/zenodo.10076550
title: Constituency Database

description: CCBD
DOI: 10.6084/m9.figshare.24796446
title: RCM_Data

description: Restrictive cardiomyopathy (RCM) is a rare myocardial disorder characterized by normal chamber size and thickness with impaired ventricular filling due to diastolic dysfunction. Pediatric RCM has limited therapeutic approaches, and the etiology is often unknown. To investigate causation of RCM, we performed exome, mRNA- and small RNA-sequencing analyses using explanted left ventricular heart tissue from pediatric RCM transplant subjects and compared them to pediatric controls. Results from short variant (SNVs and small insertions/deletions) and transcriptomic analyses provide new insights into the genetic landscape and its regulation in pediatric RCM.
DOI: 10.6084/m9.figshare.24796446.v1
title: RCM_Data

description: Restrictive cardiomyopathy (RCM) is a rare myocardial disorder characterized by normal chamber size and thickness with impaired ventricular filling due to diastolic dysfunction. Pediatric RCM has limited therapeutic approaches, and the etiology is often unknown. To investigate causation of RCM, we performed exome, mRNA- and small RNA-sequencing analyses using explanted left ventricular heart tissue from pediatric RCM transplant subjects and compared them to pediatric controls. Results from short variant (SNVs and small insertions/deletions) and transcriptomic analyses provide new insights into the genetic landscape and its regulation in pediatric RCM.
DOI: 10.3886/e193349
title: Code for: "Disentangling Moral Hazard and Adverse Selection"

description: While many real-world principal-agent problems have both moral hazard and adverse selection, existing tools largely analyze only one at a time. Do the insights from the separate
analyses survive when the frictions are combined? We develop a simple method–decoupling–to
study both problems at once. When decoupling works, everything we know from the separate analyses carries over, but interesting interactions also arise. We provide simple tests for
whether decoupling is valid. We develop and numerically implement an algorithm to calculate
the decoupled solution and check its validity. We also provide primitives for decoupling to
work, and analyze several extensions.<br><br>These files contain the programs for the journal article "Disentangling Moral Hazard and Adverse Selection", American Economic Review.<br><br>
DOI: 10.3886/e193349v1
title: Code for: "Disentangling Moral Hazard and Adverse Selection"

description: While many real-world principal-agent problems have both moral hazard and adverse selection, existing tools largely analyze only one at a time. Do the insights from the separate
analyses survive when the frictions are combined? We develop a simple method–decoupling–to
study both problems at once. When decoupling works, everything we know from the separate analyses carries over, but interesting interactions also arise. We provide simple tests for
whether decoupling is valid. We develop and numerically implement an algorithm to calculate
the decoupled solution and check its validity. We also provide primitives for decoupling to
work, and analyze several extensions.<br><br>These files contain the programs for the journal article "Disentangling Moral Hazard and Adverse Selection", American Economic Review.<br><br>
DOI: 10.6084/m9.figshare.21981179
title: An evaluation method for the priority protection of fishes based on multiple ecological dimensions

description: It’s essential to identify the priority conservation species in the habitat restoration and biodiversity conservation. Generally, people select the valuable fishes or the commercial fishes as target species in basins, according to experts’ experience rather than the scientific evaluation. With the influence of urban development, construction of water conservancy facilities and human activities, the river habitat of the Shaying River (Xuchang section) is poor. Fish conservation studies play an important part in the habitat restoration of this river section. Thus, we studied the evaluation method for the priority protection of fishes based on multiple ecological dimensions. The method including six multidimensional indicators, namely, habitat suitability, ecological stability, species endangerment criteria, intensity of human interference, genetic value, and species value. Then, we determined the indicator weights by the analytic hierarchy process (AHP), and assessed the protection priority of fishes based on various assessment criteria and comprehensive qualitative or quantitative analyses. The result shows that <i>Ctenopharyngodon idellus, Opsariichthys bidens,</i> and <i>Culter alburnus Basilewsky</i> have priority for protection, coinciding with the status in the basin. Overall, this study complements the existing indicator species selection methods, and is more scientific and comprehensive, providing an effective method for priority protection species and river habitat restoration projects.
DOI: 10.6084/m9.figshare.21981179.v1
title: An evaluation method for the priority protection of fishes based on multiple ecological dimensions

description: It’s essential to identify the priority conservation species in the habitat restoration and biodiversity conservation. Generally, people select the valuable fishes or the commercial fishes as target species in basins, according to experts’ experience rather than the scientific evaluation. With the influence of urban development, construction of water conservancy facilities and human activities, the river habitat of the Shaying River (Xuchang section) is poor. Fish conservation studies play an important part in the habitat restoration of this river section. Thus, we studied the evaluation method for the priority protection of fishes based on multiple ecological dimensions. The method including six multidimensional indicators, namely, habitat suitability, ecological stability, species endangerment criteria, intensity of human interference, genetic value, and species value. Then, we determined the indicator weights by the analytic hierarchy process (AHP), and assessed the protection priority of fishes based on various assessment criteria and comprehensive qualitative or quantitative analyses. The result shows that <i>Ctenopharyngodon idellus, Opsariichthys bidens,</i> and <i>Culter alburnus Basilewsky</i> have priority for protection, coinciding with the status in the basin. Overall, this study complements the existing indicator species selection methods, and is more scientific and comprehensive, providing an effective method for priority protection species and river habitat restoration projects.