cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17028/rd.lboro.7110635.v1
title: Study 1 data

description: Dataset connected with article: 'Increasing the use of conceptually-derived strategies in arithmetic: using inversion problems to promote the use of associativity shortcuts.' Abstract: Conceptual knowledge of key principles underlying arithmetic is an important precursor to understanding algebra and later success in mathematics. One such principle is associativity, which allows individuals to solve problems in different ways by decomposing and recombining subexpressions (e.g. ‘a + b – c’ = ‘b – c + a’). More than any other principle, children and adults alike have difficulty understanding it, and educators have called for this to change. We report three intervention studies that were conducted in university classrooms to investigate whether adults’ use of associativity could be improved. In all three studies, it was found that those who first solved inversion problems (e.g. ‘a + b – b’) were more likely than controls to then use associativity on ‘a + b – c’ problems. We suggest that ‘a + b – b’ inversion problems may either direct spatial attention to the location of ‘b – c’ on associativity problems, or implicitly communicate the validity and efficiency of a right-to-left strategy. These findings may be helpful for those designing brief activities that aim to aid the understanding of arithmetic principles and algebra.
DOI: 10.17632/mxf2c45yb5
title: Indian Seafood Fish Dataset

description: There are 8488 photos of fish in this collection that were taken in the Fish Market in Ganesh Peth, Pune, India. The eight most popular seafood fish types in India are Pomfret (Paplet), Mackerel (Bangda), Black Snapper (Tilapia), Indian Carp (Rohu), Prawn (Kolambi), Pink Perch (Rani Fish), Indian flathead (Bhetki Fish), and Black Pomfret (Black Paplet). The images have been meticulously organised into distinct categories for each category. To ensure a rich and varied collection, we made sure the collection was complete by photographing the fish in a variety of lighting conditions. The pictures are saved as JPEG files.
DOI: 10.6084/m9.figshare.24137472.v1
title: GrainSet-raw

description: GrainSet-rawincluding raw images images: raw imagesvisualize: visualization for images with annotationsxmls: annotation files
DOI: 10.6084/m9.figshare.28187999.v7
title: Matbench Discovery - Model Predictions for Geometry Optimization

description: This dataset contains model predictions from various models evaluated on the Matbench Discovery benchmark for the geometry optimization task. Task description: Relaxing atomic positions to minimize the energy For more information about the benchmark and models, visit: https://github.com/janosh/matbench-discovery.
DOI: 10.6084/m9.figshare.6945413.v1
title: Supplementary Material for: Do Common Marmosets (<b><i>Callithrix jacchus</i></b>) Use Scent to Communicate Information about Food Resources?

description: Many animals use olfactory cues to signal information about food resources; however, this particular use of scent has received little attention in primates. Common<b><i></i></b> marmosets (<i>Callithrix jacchus</i>)<i></i> are exudativores that gouge bark to elicit exudate production and frequently deposit scent marks at gouge holes. We conducted preliminary tests of the hypothesis that common marmosets use olfactory cues to communicate information about exudate value, with more desirable resources targeted for marking. We performed choice experiments on two captive male marmosets. The animals were presented with: (1) a urine scent-marked and unmarked food resource, and (2) a high and low value food resource (i.e., greater/lesser food volumes). Marmosets placed more scent marks on high, compared to low, value food resources. Animals also spent more time gouging, removed more bark and more frequently revisited high versus low value food resources. Lastly, scent-marked foods were gouged more often than unmarked foods. Our findings support the hypothesis that marmosets use scent marking and olfaction to convey information about food resources, although verification in a larger sample is needed. Nonetheless, the demonstrated link between food value and scent marking suggests that olfactory signals may aid marmoset foraging decisions.
DOI: 10.6084/m9.figshare.22986668.v1
title: Landscape of semi-extractable RNAs across five human cell lines

description: <strong>Supplementary Data S2. Full list of semi-extractable (SE) RNAs and extractable (EX) RNAs.</strong>
DOI: 10.6084/m9.figshare.29144678.v1
title: Breast cancer screening programmes and breast cancer mortality: An observational study of 194 countries: Supplementary materials (Online repository)

description: Supplementary content:Table S1: GATHER statement checklist, with a description of compliance and location of information for "Breast Cancer Screening Programs and Breast Cancer Mortality: An Observational Study of 194 Countries”Table S2: Countries with regular breast cancer screening programs at the national level, 2015–2021Table S3: Countries with inconsistent breast cancer screening programs at the national level, 2015–21Table S4: Countries without any breast cancer screening programs at the national level, 2015–2021Table S5: Annualized changes in age-standardized breast cancer mortality across the countries from 2015–2021Table S6: European countries with mammographic screening coverage data, 2013–21Table S7: European countries with screening coverage data included or excluded from the analysisFig. S1. Annualized per cent changes in breast cancer deaths between countries with regular and irregular national breast cancer screening programmes, overall and by age group, 2015–2021 and 2015–2019 (analysis excluding the 21 outlier countries)Fig. S2. Annualized per cent changes in breast cancer deaths between countries with regular and irregular national breast cancer screening programmes, overall and by age group, 2015–2021 and 2015–2019 (among the 21 outlier countries)
DOI: 10.6084/m9.figshare.29155895.v1
title: THE ROLE OF ARTIFICIAL INTELLIGENCE IN THE FOREIGN POLICY OF USA AND CHINA

description: The universal rights framework faces a few perils from all over the world; the most deterrent to states paying consideration to human rights rules is their national security, financial interface, and discretionary ties. The geopolitical competition, xenophobic household developments, and reconnaissance innovation pose a danger to the worldwide rights framework. For billions living in devastated or conflict-ridden regions, an around-the-world rules-based framework is still distant. The inquiry address of this ponder is to get it Why is human rights arrangement critical for China and the US remote arrangement and How will China and America play their part in the human rights approach in the Israel and Gaza war. The display thinks about points Chinese remote arrangement points to advance quite universal struggle resolutions and destabilize strengths, undermining the US and advancing China's worldwide administration, faulting the US for clutter and the US government plans to hold China responsible for its worldwide framework manhandle and force results for genuine infringement. This chapter employments a subjective approach, deliberately analyzing current writing, arrangement papers, and official affirmations to supply peruses an intensive get handle on the subject. Comes about from this approach are exhaustive, reliable, and safe for feedback. The think draws on a hypothetical system The examination will be conducted through the focal point of the constructivism hypothesis that coordinating viewpoints of international relations, national character, authentic accounts, and social settings to shape the prioritization and execution of human rights contemplations in outside arrangement. Social considers, and political science. The part of human rights within the outside approaches of China and the USA is pivotal for policymakers, researchers, and professionals alike. This investigation contributes to the broader talk on universal relations, cultivating experiences into the challenges and openings displayed by varying approaches to human rights on the worldwide arrange.
DOI: 10.17632/njp5565zzm
title: Stock_Price_History_Datset

description: Stock_Price_History_Datset is a folder comprising six processed stock price history datasets (*.csv) collected from 8th August 2016 to 31st March 2023 (2427 days). Among the stock datasets, WIPRO, TCS, BHARATARTL, and SBIN datasets were collected from Yahoo Finance website, and the missing data was obtained from the NSE website. The dataset NXTDIGITAL was taken from the BSE website. Once the datasets were collected, the Date and Close price were extracted and formatted.
DOI: 10.6084/m9.figshare.21424491.v1
title: Cost analysis.xlsx

description: Cost analysis
DOI: 10.6084/m9.figshare.21792689.v1
title: Population dynamics of head direction neurons during drift and reorientation

description: This dataset contains the data used in this research from each experiment. Data in each experiment is summarized in a Matlab structure array with the following variables: - Deconvolved_spikes: as obtained using the algorithm from Friedrich et al., 2017 (see references in the paper). - measured_HD: from the behavioral camera. - visual_cue_angle - event_start_all: Time stamp of the beginning of each event (i.e.: baseline, shifted-cue event, darkness, cue-rotation). - event_length_all: Duration, in frames, of each event. internal_HD: decoded head direction from neural activity using the algorithm from Wei et al., 2020 (see references in the paper). mouse_ID: Mouse ID RawTraces: Calcium traces obtained using the miniscope algorithm (miniscope.org (2018)) cue_rotation: Direction of cue rotation in the cue rotation experiment. <br> IMPORTANT: The dataset should not be used for republication without prior consent from the authors.
DOI: 10.6084/m9.figshare.22821791.v1
title: nonLin_Conn_AD

description: EEG source space connectivity matrices of AD patients computed with complementary metrics of nonliear connectivity (instantaneuos, lagged and total nonliear connectivity). <br> Leyend: files named *ROInonLinInstConn*.txt: nonliear instantaneous connectivity files named *ROInonLinLagConn*txt: lagged nonliear connectivity files named *ROInonLinTotConn*: total nonliear connectivity
DOI: 10.6084/m9.figshare.22826459.v1
title: RescueNet Semantic Segmentation Test Set

description: Test set of RescueNet semantic segmentation.
DOI: 10.6084/m9.figshare.26062579.v1
title: Supplementary tables. <b>Top-Down Proteomics Identifies Plasma Proteoform Signatures of Liver </b><b>Cirrhosis Progression</b>

description: We performed a pilot top-down LC-MS/MS analysis to identify proteoforms (PFRs) in the plasma of patients with 3 progressive stages of liver cirrhosis
DOI: 10.6084/m9.figshare.26407699.v1
title: Dataset of 460 RNAs secondary structures in Dot-Bracket notation for measuring the computational time of ASPRAlign and SERNAlign tools.

description: Dataset of 460 RNAs secondary structures in Dot-Bracket notation for measuring the computational time of:- generating Structural Trees- generating Structural Sequences- computing the ASPRA distance among all the molecules- computing the SERNA distance among all the molecules<br>The molecules were extracted from the RNA STRAND databasehttp://www.rnasoft.ca/strand/Andronescu, M., Bereg, V., Hoos, H.H., Condon, A.: RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database. BMC Bioinformatics 9, 340 (2008)with the following criteria:<br>- length from 1000 to 1700 nucleotides- at least one pseudoknot present<br>The CSV files are described in the following:- structsASPRA.csv contains the times to generate the Structural Trees of the 460 molecules using the tool ASPRAlign available at https://github.com/bdslab/aspralign - structsSERNA.csv contains the times to generate the Structural Sequences of the 460 molecules using the tool SERNAlign available at https://github.com/bdslab/sernalign- cmpASPRA.csv contains the times to compute the ASPRA distance among all the pairs of the 460 molecules- cmpSERNA.csv contains the times to compute the SERNA distance among all the pairs of the 460 moleculesThis dataset was used in the following papersQuadrini, Michela, Tesei, Luca, Merelli, Emanuela: ASPRAlign: a tool for the alignment of RNA secondary structures with arbitrary pseudoknots. Bioinformatics 36(11), 3578–3579 (2020)Tesei, Luca, Levi, Francesca, Quadrini, Michela, Merelli, Emanuela: Alignment of RNA Secondary Structures with Arbitrary Pseudoknots using Structural Sequences. Submitted for publication (2024)ReferencesQuadrini, Michela, Tesei, Luca, Merelli, Emanuela: An algebraic language for RNA pseudoknots comparison. BMC Bioinformatics 20(4), 161 (2019)<br><br><br>
DOI: 10.6084/m9.figshare.26820379.v1
title: build_pam_allpoints_lyco.csv

description: On "build_pam_allpoints_lyco.csv", we provide occurrence points used to run the analysis. The data were obtained from GBIF (https://doi.org/10.15468/dl.hktrep), speciesLink, and JABOT.
DOI: 10.6084/m9.figshare.5789100.v1
title: Supplementary Material for: The Combined Effects of Genetic Variation in the CNDP1 and CNDP2 Genes and Dietary Carbohydrate and Carotene Intake on Obesity Risk

description: <b><i>Background/Aims:</i></b> It is possible that carnosinase (CNDP1) and cellular nonspecific dipeptidase (CNDP2) have important roles in protecting cells and tissues against the damage of oxidative stress. Oxidative stress and subsequent inflammation are key factors in the development of common chronic metabolic diseases, such as obesity. We aimed to investigate the combined effects of genetic variations in <i>CNDP1</i> and <i>CNDP2</i> and dietary carbohydrate and carotene intake on obesity risk. <b><i>Methods:</i></b> A total of 1,059 Japanese men were randomly selected from participants who visited a medical center for routine medical checkups. We analyzed the relationships between the genotypes of 4 single-nucleotide polymorphisms (SNPs) (rs12605520, rs7244647, rs4891558, and rs17089368) in the <i>CNDP1/CNDP2 </i>locus and body mass index or prevalence of obesity/overweight taking into account dietary carbohydrate and carotene intake. <b><i>Results:</i></b> We found that 2 SNPs (rs7244647 in <i>CNDP1</i> and rs4891558 in <i>CNDP2</i>) were associated with obesity risk. In addition, these associations were observed only in the group with high carbohydrate and low carotene intake but not in the group with low carbohydrate and high carotene intake. <b><i>Conclusions:</i></b> Our findings indicate that the combination of genetic variations in <i>CNDP1 </i>and<i> CNDP2</i> and dietary carbohydrate/carotene intake modulate obesity risk.
DOI: 10.6084/m9.figshare.7659707.v1
title: Additional file 10: of A genome-wide analysis of coatomer protein (COP) subunits of apicomplexan parasites and their evolutionary relationships

description: Table S19. The Expression of COPI and COPII subunits in different stages of Plasmodium falciparum. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.7789574.v1
title: flanker behavior.zip

description: The behavior data for flanker task.
DOI: 10.17632/8tj2d5gh7b
title: Working with objects. The OOram Software Engineering Method.

description: Book. Manning/Prentice Hall 1996. ISBN 0-13-452930-8. Distributed by Prentice-Hall for a few months, they then withdrew it from the market without any explanation. Very frustrating. Out of print, copyright has reverted to the author. This dataset is the last draft before publication. Working with objects is the source on a method which takes an evolutionary step forward in object-oriented development practices. OOram adds the intuitively simple but powerful concept of a role to object-oriented models and methods. For example, imagine trying to describe a person as an object. The most effective way to do this would be to independently describe each of the roles that person adopts (parent, employee, and so on) and then define how the person supports them. These ideas form the heart of the OOram approach. 2 reviews: "The first method that deals realistically with reuse, and one of the few that comes close to describing what I do when I design." (Ralph Johnson, University of Illinois) Ian Graham voted this book "One of the Three Best Books" of 1996/97. (JOOP September 97): "This book brings the OOram method before the public, along with its most significant contribution to object-oriented software engineering: role modeling. It also provides plenty of sensible advice for developers adopting object technology, based on the author's evident experience and understanding of the the technical intricacies and human aspects of software development. However, it is a deeply technical book and will put off readers who are not already familiar with an object-oriented programming language."... "As a technical contribution it should become one of the classic texts within the field. The role modeling ideas will undoubtedly influence other object-oriented software engineering methods and I think we will see them quickly adopted in the now emerging third generation methods."
DOI: 10.17632/hkym89g675
title: Datasets for Evaluating HDSM: A Distributed Data Mining Approach to Classifying Heterogeneous Data Streams

description: These datasets were used for the experimental evaluation of the Hierarchical Distributed Stream Miner (HDSM) as described in the accompanying article. These datasets may be useful for evaluating other distributed data stream mining methods.
DOI: 10.17632/nwzb4p7h8b
title: Supplementary Information to: Life-cycle impacts of wind energy development on bird diversity in Norway

description: See the SI description document.
DOI: 10.6084/m9.figshare.21551775.v1
title: Supplementary Material for: Large common mitochondrial DNA deletions are associated with a mitochondrial SNP T14798C near the 3' breakpoints

description: Introduction Large somatic deletions of mitochondrial DNA (mtDNA) accumulate with aging in metabolically active tissues such as the brain. We have cataloged the breakpoints and frequencies of large mtDNA deletions in the human brain. Methods We quantified 112 high-frequency mtDNA somatic deletions across four human brain regions with the Splice-Break2 pipeline. In addition, we utilized PLINK/Seq to test the association of mitochondrial genotypes with the abundance of these high-frequency mtDNA deletions. A conservative p-value threshold of 5E-08 was used to find the significant loci. Results One mtDNA SNP (T14798C) was significantly associated with mtDNA deletions in two brain regions, the dorsolateral prefrontal cortex (DLPFC) and the superior temporal gyrus (STG). Since the DLPFC showed the most robust association between T14798C and two deletion breakpoints (7816-14807 and 5462-14807), this association was tested in the DLPFC of a replication sample and validated the first results. Incorporating the C allele at 14798 bp increased the perfect/imperfect length of the repeat at the 3' breakpoint of the two associated deletions. Conclusion This is the first study to identify the association of mtDNA SNP with large mtDNA deletions in the human brain. The T14798C allele located in the MT-CYB gene is a common polymorphism that occurs in several mitochondrial haplogroups. We hypothesize that the T14798C association with two deletions occurs by extending the repeat length around the 3' deletion breakpoints. This simple mechanism suggests that mtDNA SNPs can affect the mitochondrial genome structure, especially in brain where high levels of reactive oxygen species (ROS) lead to deletion accumulation with aging.
DOI: 10.6084/m9.figshare.24125052.v1
title: Genotype files

description: for "<b>Comparing feature selection and machine learning approaches for predicting </b><b><i>CYP2D6</i></b><b> methylation from genetic variations</b>"
DOI: 10.6084/m9.figshare.25532485.v1
title: Supplementary Material for: Acquiring social safety engages oxytocin neurons in the supraoptic nucleus – role of Magel2 deficiency

description: Introduction 
Exposure to social trauma may alter engagement with both fear-related and unrelated social stimuli long after. Intriguingly, how simultaneous discrimination of social fear and safety is affected in neurodevelopmental conditions remains underexplored. The role of the neuropeptide oxytocin is established in social behaviors, and yet unexplored during such a challenge post-social trauma. 

Methods 

Using Magel2 knockout mice, an animal model of Prader Willi Syndrome (PWS) and Schaaf-Yang Syndrome (SYS), we tested memory of social fear and safety after a modified social fear conditioning task. Additionally, we tracked the activity of oxytocin neurons in the supraoptic (SON) and paraventricular (PVN) nuclei of the hypothalamus by fibre photometry, as animals were simultaneously presented with a choice between a fear and safe social cue during recall. 

Results 
Male Magel2 KO mice trained to fear females with electrical footshocks avoided both unfamiliar females and males during recalls, lasting even a week post-conditioning. On the contrary, trained Magel2 WT avoided only females during recalls, lasting days rather than a week post-conditioning. Inability to overcome social fear and avoidance of social safety in Magel2 KO mice were associated with reduced engagement of oxytocin neurons in the SON, but not the PVN. 

Conclusion 
In a preclinical model of PWS/SYS, we demonstrated region-specific deficit in oxytocin neuron activity associated with behavioral generalization of social fear to social safety. Insights from this study add to our understanding of oxytocin action in the brain at the intersection of social trauma and PWS/SYS.
DOI: 10.17632/dtpyc2pffg
title: A simple variational quantum Monte Carlo-effective mass approach for excitons and trions in quantum dots

description: A computational model is presented to calculate the ground state energy of neutral and charged excitons confined in semiconductor quantum dots. The model is based on the variational Quantum Monte Carlo method and effective mass Hamiltonians. Through an iterative Newton–Raphson process, minimizing the local energy, and (optional) parallelization of random walkers, fast and accurate estimates of both confinement and Coulomb binding energies can be obtained in standard desktop computers. To illustrate the reach of the model, we provide Fortran programs and illustrative calculations for colloidal CdSe nanoplatelets with large lateral dimensions and dielectric confinement, where electronic correlations are strong. The results compare well with exact variational calculations and largely outperform configuration interaction calculations in computational efficiency.