cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7902017
title: Software Architecture Reconstruction for Microservice Systems Using GraalVM Native Image

description: This Dataset contains the System Architecture Reconstruction for Train-Ticket microservice benchmark. It includes: Manual Analysis, GraalVM Analysis, and Source code Analysis. It's described in a paper with title: Software Architecture Reconstruction for Microservice Systems Using GraalVM Native Image
DOI: 10.6073/pasta/5be746b833e5d1592c6f412e57bbf5eb
title: Jornada Basin LTER: Wireless meteorological station at NPP T-EAST site: Daily summary data: 2013 - ongoing

description: Daily summary data at NPP T-EAST met station. Average/maximum/minimum air temperature; average/maximum relative humidity and wind speed and average wind direction; solar radiation; albedo. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-EAST site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Solar radiation is measured at 3m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.15151/esrf-es-1057334270
title: Structural Biology of Macromolecules and Macromolecular complexes from India

description: Structural biology research groups located in India constitute the INDIA-BAG and will utilize MX & SAXS to study different biological macromolecules. The non-proprietary agreement signed between ESRF and the Department of Biotechnology (DBT) enables studies that provide fundamental mechanistic insight regarding different biological processes. A brief description of over 50 research groups is provided in the global summary and a summary of their research contributions involving data collected at ESRF is provided in the 2 year BAG report. The ESRF-India partnership is supported by a single grant provided to the RCB by the DBT. Please note that a report listing no. of shifts utilized, details of users and the research output from these visits has to be sent to the DBT to obtain release of funds to pay ESRF membership dues. Consequently, all the structural biologists from India are grouped in a single BAG to enable monitoring of progress to collect the required statistics.
DOI: 10.15151/esrf-es-1059303871
title: BAG for the Structural Biology Groups in Madrid

description: This proposal is a collaborative effort of the Structural Biology Groups of Madrid with the objective to form a strong core of scientist devoted to this area of research in Spain. It is composed of 18 groups distributed in 4 research Institutes.
DOI: 10.15151/esrf-es-1168746136
title: The Institute of Structural and Molecular Biology (ISMB) application for beam time, comprising groups from Birkbeck College, UCL and the Que

description: The ISMB spans Birkbeck and UCL with researchers in the core Departments at Birkbeck Biological Sciences and several UCL Research Departments. Research groups from Queen Mary University of London (QMUL) and Kingston University (KU) are joint co-applicants as they have strong links and collaborations with groups from ISMB. All groups share common interests in disciplines including structural, chemical, molecular and cell biology; using multidisciplinary andmultiscalar approaches. ISMB, UCL, QMUL and KU investigators, ranging from early-career research fellows to internationally-established senior academics, apply X-ray crystallography carried out mainly at our Wellcome funded facility at Birkbeck, as an essential method enabling: i) description of the atomic-level mechanistic details of macromolecules and macromolecular machines, and ii) structure-based drug discovery, while iii) complementing and supporting cryoelectron microscopy (cryo-EM) projects.
DOI: 10.15151/esrf-es-1168748133
title: Studies of changes in the structure of xylose/glucose isomerase induced by high pressure

description: Enzymes processing carbohydrates are important for many industrial applications, especially in the food industry (food processing). Pressurisation is often applied in food processing to modulate enzyme specificity and catalytic properties. However, the behaviour of proteins under high-pressure is not fully understood yet. To date, only 242 structures made by X-ray diffraction have been deposited in the Protein Data Bank, which represents 1.2‰ of all available structures. Results show that pressure fairly uniformly destabilises the protein structures, modulating their catalytic properties. In this proposal we aim to study the impact of high-pressure on crystals of model protein - glucose/xylose isomerase from Streptomyces rubiginosus, which will involve investigating freezing under high-pressure protein monocrystals, using the diffraction of X-rays.
DOI: 10.15151/esrf-es-1112066208
title: Crystal-chemistry of xenon in antigorite, main carrier of volatile elements to the mantle

description: The aim of this proposal is to understand how xenon (Xe), a key tracer of terrestrial and atmosphere formation, is recycled at depth through subduction processes. Xenon isotopes in mantle fluids indeed show that atmospheric Xe is recycled at depth via subduction, with a larger contribution to the mantle Xe budget than in the case of Ar, and potentially essentially carried in phyllosilicates due to their cage and layered structures along with water and other major volatile elements. However, there are very few data available to document this hypothesis in the case of Xe, and no crystallographic data at all. We therefore plan to elucidate Xe retention mechanism(s) in antigorite, the high pressure (P) form of serpentine and main carrier of water back into the mantle. For this, we need to collect high quality powder diffraction data in situ within antigorite stability field, and beyond in temperature (T) to probe Xe behavior upon antigorite breakdown and water release.
DOI: 10.15151/esrf-es-1112066581
title: In-situ investigation of strain and defect formation during Ni-base alloy solidification

description: A major issue during turbine blade production for aeronautic applications is the formation of defects such as stray grains, freckles, and segregated areas.These defects are linked to the development of strain and convective flows during the solidification step. The aim of the proposed experiments is to study in-situ misorientations occurring during the dendritic microstructure formation and fragmentation in metal alloys. The experiment will consist in visualizing the solidification of samples of a commercial Ni-base alloy and a model binary alloy for comparison with numerical simulations. To achieve this goal, directional solidification experiments will be monitored with a unique high-temperature furnace allowing time-resolved synchrotron radiography and diffraction imaging to be concomitantly used.
DOI: 10.6084/m9.figshare.22774433
title: Replication Package for ASE 2023 Submission "Understanding and Remediating Open-Source License Incompatibilities in the PyPI Ecosystem"

description: This is the replication package for our ASE 2023 Submission <em>*</em> Understanding and Remediating Open-Source License Incompatibilities in the PyPI Ecosystem <em>*</em>.
DOI: 10.6084/m9.figshare.22774433.v2
title: Replication Package for ASE 2023 Submission "Understanding and Remediating Open-Source License Incompatibilities in the PyPI Ecosystem"

description: This is the replication package for our ASE 2023 Submission <em>*</em> Understanding and Remediating Open-Source License Incompatibilities in the PyPI Ecosystem <em>*</em>.
DOI: 10.6073/pasta/ca61042d03bd51c947c73cdd4e2f34b0
title: Jornada Basin LTER: Wireless meteorological station at NPP T-EAST site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at NPP T-EAST met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes at an automated meteorological station installed at Jornada LTER NPP T-EAST site. Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This is an ONGOING dataset.
DOI: 10.6073/pasta/13ee1803d5f41ed6cdee826d634a2421
title: Jornada Basin LTER: Wireless meteorological station at NPP T-EAST site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP T-EAST met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP T-EAST site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.5281/zenodo.7902053
title: Neuro COVID-19

description: <strong>Incidence of </strong><strong>neurological manifestations and complications in patients with COVID-19 </strong><strong>infection: a propensity score matching analysis</strong>
DOI: 10.5281/zenodo.7902052
title: Neuro COVID-19

description: <strong>Incidence of </strong><strong>neurological manifestations and complications in patients with COVID-19 </strong><strong>infection: a propensity score matching analysis</strong>
DOI: 10.6073/pasta/0bb7650f6d1daae2a908c090e624dd57
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: 5-minute summary wind and air temperature data: 2013 - ongoing

description: 5-minute summary data at NPP T-TAYL met station. Average air temperature, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.5281/zenodo.7895965
title: Label-free data mining of scientific literature by unsupervised syntactic distance analysis

description: 1. OER.zip: literature resources, mined data and manual annotation of OER 2. OLED.zip: literature resources and mined data of OLED 3. PVK_ligand.zip: literature resources, mined data and manual annotation of perovskite ligand 4. PVK_solvent.zip: literature resources, mined data and manual annotation of perovskite solvent 5. syn_vec.part01.rar - syn_vec.part01.rar: word vector model trained by synthesis paragraphs in USPTO 6. crossref_vec.part01.rar - crossref_vec.part10.rar: word vector trained by abstracts in Crossref
DOI: 10.5281/zenodo.7895964
title: Label-free data mining of scientific literature by unsupervised syntactic distance analysis

description: 1. OER.zip: literature resources, mined data and manual annotation of OER 2. OLED.zip: literature resources and mined data of OLED 3. PVK_ligand.zip: literature resources, mined data and manual annotation of perovskite ligand 4. PVK_solvent.zip: literature resources, mined data and manual annotation of perovskite solvent 5. syn_vec.part01.rar - syn_vec.part01.rar: word vector model trained by synthesis paragraphs in USPTO 6. crossref_vec.part01.rar - crossref_vec.part10.rar: word vector trained by abstracts in Crossref
DOI: 10.6073/pasta/fb7af0c359a0743c602b82521e789969
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: 1-hour summary data: 2013 - ongoing

description: Hourly summary data at NPP T-TAYL met station. Average/maximum/minimum air temperature; average relative humidity and wind direction; average/maximum wind speed. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/69bd0a2008b8b10ba653ae9cc59e3b71
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: 30-minute summary data: 2013 - ongoing

description: 30-minute summary data at NPP T-TAYL met station. Average air temperature, relative humidity, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/30ecd1f22b430e37869a6dd8dc58ef4d
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: Daily summary data: 2013 - ongoing

description: Daily summary data at NPP T-TAYL met station. Average/maximum/minimum air temperature; average/maximum relative humidity and wind speed and average wind direction. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.34740/kaggle/dsv/5615582
title: Elon Musk Tweets
DOI: 10.5517/ccdc.csd.cc2dqhxk
title: CCDC 2226169: Experimental Crystal Structure Determination

description: Related Article: Simon Sengupta, Philipp Schüler, Phil Liebing, Matthias Westerhausen|2023|Chem.-Eur.J.|29|e202300035|doi:10.1002/chem.202300035
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dqhyl
title: CCDC 2226170: Experimental Crystal Structure Determination

description: Related Article: Simon Sengupta, Philipp Schüler, Phil Liebing, Matthias Westerhausen|2023|Chem.-Eur.J.|29|e202300035|doi:10.1002/chem.202300035
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dqmnf
title: CCDC 2226285: Experimental Crystal Structure Determination

description: Related Article: Shiyong Chen|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dqx46
title: CCDC 2226548: Experimental Crystal Structure Determination

description: Related Article: Jagadeesh Reddy Thondur, Duddu S. Sharada, Gedu Satyanarayana|2023|Org.Lett.|25|2793|doi:10.1021/acs.orglett.3c00691
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/87d1ae276f514ee5cd9e5023d4d8a0c5
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at NPP T-TAYL met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This is an ONGOING dataset.
DOI: 10.5517/ccdc.csd.cc2drgwj
title: CCDC 2227098: Experimental Crystal Structure Determination

description: Related Article: Cary R. Stennett, Joseph Q. Nguyen, Joseph W. Ziller, William J. Evans|2023|Organometallics|42|696|doi:10.1021/acs.organomet.3c00074
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2drgxk
title: CCDC 2227099: Experimental Crystal Structure Determination

description: Related Article: Cary R. Stennett, Joseph Q. Nguyen, Joseph W. Ziller, William J. Evans|2023|Organometallics|42|696|doi:10.1021/acs.organomet.3c00074
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/c025c88b4b8bba8a1ae48d401db73522
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP T-TAYL met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.21959612
title: Supplementary material from "Multimodal duetting in katydids under bat predation risk: a winning strategy for both sexes"

description: <strong>Abstract: </strong>Duetting is a behaviour observed in some animal species, in which both males and females participate in signalling to find mates. It may have evolved as an adaptation to reduce the costs associated with mate-finding behaviours, such as predation risk. Duetting systems allow estimation of sex-specific predation risks of signalling and searching in the same species, giving insights into the selective forces acting on these behaviours. Using an acoustic-vibratory duetting katydid, <em>Onomarchus uninotatus</em>, and its bat predator, <em>Megaderma spasma</em>, we estimated the sex-specific predation costs of different mate-finding behaviours, such as walking, flying and signalling, by conducting experiments with untethered live katydids and bats. We found that acoustic-vibratory duetting benefits both the sexes as a low-risk mate-finding strategy. <br> <strong>Data description:</strong> Behavioural experiments were done in an enclosure set-up with free-flying bats and katydids. Bat response to different mate-finding behaviours (treatments) of katydid males and females was recorded to estimate predation risk. The main datasheet named "all_treatments" includes bat ID, prey sex, treatments, and bat response. The treatments for male katydids were call, walk and flight and for females were tremulation (vibratory signalling), walk and flight phonotaxis. Bat response is denoted as "1" and "0" for approach and no approach, respectively, to the treatments. However, multiple trials were conducted for flights, and if the bat approached at least once, it was considered as an approach. The datasheet named "all_flight_trials" includes bat responses to all flight trials. <br> <strong>Analysis:</strong> R Statistical Software (v4.1.2; R Core Team 2021) was used to analyze the data. 95% bootstrap confidence intervals were obtained around the mean proportions of bat approaches to each treatment, with 10,000 replicates using bat IDs. The R script can be found in the file "code_bootstrapped_CI". <br> <br>
DOI: 10.6073/pasta/3181d50304e3c0e14c91f4156f8285f4
title: Jornada Basin LTER: Wireless meteorological station at NPP T-WEST site: 5-minute summary wind and air temperature data: 2013 - ongoing

description: 5-minute summary data at NPP T-WEST met station. Average air temperature, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at T-WEST 3m, and air temperature at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.22721890
title: Comparison of bacterial profile of gallbladder with gallstones from patients undergoing cholecystectomy due to complicated and uncomplicated cholelithiasis: changes in the epidemiological scenario

description: ABSTRACT Introduction: cholelithiasis is a highly prevalent disease of the digestive system in the world. In Brazil, it is a routine condition, whose studies suggest a prevalence of around 10% of adults. Colonization of bile and gallstone pathogens can occur when there is bacterial stasis and proliferation. This proliferation is facilitated by the adhesion and biofilm formation capacity of some bacteria. There are also lithogenic processes that involve bacterial participation. Studies have shown changes in the microbiota of the gallbladder of patients undergoing cholecystectomy, which may impact empirical treatment with antibiotics. Methodology: microbiological analyzes of the sonication fluid of the gallstones and of two samples with bile were performed. Identification and antimicrobial susceptibility testing were performed according to a standard routine. Results: of the 34 patients, 76.4% were female. The age group was 48 years +/- 16.61. Acute cholecystitis occurred in 50% of cases. Bactobilia was evidenced in 32.1% of the cases. Klebisiella pneumoniae was noted as the most prevalent pathogen in acute cholecystitis; and Enterobacter sp, in cases of uncomplicated cholelithiasis. Greater sensitivity was obtained in the search for microorganisms in the sonication fluid samples of the stones in relation to the bile samples (p=0.0058). Conclusion: there was a higher prevalence of bactobilia in patients with acute cholecystitis compared to those with uncomplicated cholelithiasis. The use of sonication in bacterial investigation proved to be superior to the conventional method and can be considered.