cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9p6dan
title: Occurrence Download

description: A dataset containing 895819 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Picea abies)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry POLYGON ((-20 20, 45 20, 45 75, -20 75, -20 20))"
 ]
}

 The dataset includes 895819 records from 1382 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046868-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18738/t8/uoes4s/bhunez
title: Vid2RealPhase2_P12_kinect_000095.png
DOI: 10.18738/t8/uoes4s/0a7um4
title: Vid2RealPhase2_P12_kinect_000092.png
DOI: 10.18738/t8/uoes4s/9cmo6v
title: Vid2RealPhase2_P12_kinect_000044.png
DOI: 10.18738/t8/uoes4s/fchsm0
title: Vid2RealPhase2_P12_kinect_000038.png
DOI: 10.18738/t8/uoes4s/hbeuiu
title: Vid2RealPhase2_P12_kinect_000031.png
DOI: 10.18738/t8/uoes4s/jhogcj
title: Vid2RealPhase2_P12_kinect_000043.png
DOI: 10.18738/t8/uoes4s/lxslap
title: Vid2RealPhase2_P12_kinect_000112.png
DOI: 10.18738/t8/uoes4s/tsrold
title: Vid2RealPhase2_P12_kinect_000115.png
DOI: 10.18738/t8/uoes4s/lkqxbs
title: Vid2RealPhase2_P12_kinect_000003.png
DOI: 10.18738/t8/uoes4s/xgcj1h
title: Vid2RealPhase2_P12_kinect_000036.png
DOI: 10.18738/t8/uoes4s/kvr7xr
title: Vid2RealPhase2_P12_kinect_000004.png
DOI: 10.18738/t8/uoes4s/qjyxzk
title: Vid2RealPhase2_P12_kinect_000120.png
DOI: 10.18738/t8/uoes4s/jfjwer
title: Vid2RealPhase2_P12_kinect_000078.png
DOI: 10.18738/t8/uoes4s/xs3bad
title: Vid2RealPhase2_P12_kinect_000076.png
DOI: 10.18738/t8/uoes4s/7vyoeo
title: Vid2RealPhase2_P12_kinect_000071.png
DOI: 10.18738/t8/uoes4s/yiquk1
title: Vid2RealPhase2_robotP12video.mp4
DOI: 10.18738/t8/uoes4s/vwmsnu
title: Vid2RealPhase2_P12calib_kinect_int.yaml
DOI: 10.18738/t8/uoes4s/wcxvrm
title: Vid2RealPhase2_P12calib_vlp16_ext.yaml
DOI: 10.18738/t8/uoes4s/g9bshe
title: Vid2RealPhase2_P12calib_kinect_ext.yaml
DOI: 10.18738/t8/uoes4s/h7bw4c
title: Vid2RealPhase2_P12rosbag.bag
DOI: 10.18738/t8/uoes4s/nbe6as
title: Vid2RealPhase2_P12calib_vectornav_ext.yaml
DOI: 10.18738/t8/uoes4s/obpurc
title: Vid2RealPhase2_P18rosbag.bag
DOI: 10.18738/t8/uoes4s/rjpmrz
title: Vid2RealPhase2_P18calib_vlp16_ext.yaml
DOI: 10.18738/t8/uoes4s/49xnty
title: Vid2RealPhase2_P18calib_kinect_int.yaml
DOI: 10.18738/t8/uoes4s/ol2uyj
title: Vid2RealPhase2_P18calib_kinect_ext.yaml
DOI: 10.18738/t8/uoes4s/1p65om
title: Vid2RealPhase2_P18_vlp16_000194.bin
DOI: 10.18738/t8/uoes4s/ffvnrx
title: Vid2RealPhase2_P18calib_vectornav_ext.yaml
DOI: 10.18738/t8/uoes4s/poxr0t
title: Vid2RealPhase2_P18_vlp16_000283.bin
DOI: 10.18738/t8/uoes4s/umkzrg
title: Vid2RealPhase2_P18_vlp16_000145.bin
DOI: 10.18738/t8/uoes4s/3mejwq
title: Vid2RealPhase2_P18_vlp16_000252.bin
DOI: 10.18738/t8/uoes4s/rkm62u
title: Vid2RealPhase2_P18_vlp16_000139.bin
DOI: 10.18738/t8/uoes4s/bplfu6
title: Vid2RealPhase2_P18_vlp16_000400.bin
DOI: 10.18738/t8/uoes4s/qpnzmo
title: Vid2RealPhase2_P18_vlp16_000061.bin
DOI: 10.18738/t8/uoes4s/quiz2i
title: Vid2RealPhase2_P18_vlp16_000376.bin
DOI: 10.25345/c5804xx2r
title: MassIVE MSV000096064 - Proteomic profile of GMC101 worms upon arsenic treatment
title: We conducted a proteomics-based analysis to investigate the protective effect of arsenic (As) against Abeta induced paralysis in GMC101 strain of Caenorhabditis elegans. These worms express human Abeta1-42 in their body wall muscle cells under the control of the unc-54 myosin heavy-chain promoter, where it forms oligomers and aggregates, leading to progressive paralysis. A temperature shift from 20 C to 25C was used to induce Abeta aggregation and consequent muscle paralysis. Our findings indicate that As supplementation effectively mitigates Abeta-triggered paralysis. To elucidate the underlying mechanisms, we employed an unbiased proteomics approach, comparing the proteomic profiles of GMC101 exposed to different temperatures in response to 80 ppm As treatment during development. Worms were treated from L1 to L4 larval stages at 20 C and then shifted to As-free plates at either 20C or 25 C from L4 to adulthood day 1 (AD1), with samples collected on AD1 for analysis. This investigation aims to identify differentially regulated proteins and potential candidates involved in mediating the protective effects of As, offering insights into the molecular mechanisms underlying Abeta toxicity in C. elegans models.
DOI: 10.18738/t8/uoes4s/mkfnaf
title: Vid2RealPhase2_P18_vlp16_000371.bin
DOI: 10.18738/t8/uoes4s/stjkmf
title: Vid2RealPhase2_P18_vlp16_000229.bin
DOI: 10.18738/t8/uoes4s/b1j2fc
title: Vid2RealPhase2_P18_vlp16_000407.bin
DOI: 10.18738/t8/uoes4s/efx0xh
title: Vid2RealPhase2_P18_vlp16_000066.bin
DOI: 10.18738/t8/uoes4s/57ijiu
title: Vid2RealPhase2_P18_vlp16_000284.bin
DOI: 10.18738/t8/uoes4s/ynmo8u
title: Vid2RealPhase2_P18_vlp16_000142.bin
DOI: 10.18738/t8/uoes4s/uklhnd
title: Vid2RealPhase2_P18_vlp16_000193.bin
DOI: 10.18738/t8/uoes4s/xoaooz
title: Vid2RealPhase2_P18_vlp16_000255.bin
DOI: 10.18738/t8/uoes4s/e3lsly
title: Vid2RealPhase2_P18_vlp16_000227.bin
DOI: 10.18738/t8/uoes4s/rdzw7s
title: Vid2RealPhase2_P18_vlp16_000130.bin
DOI: 10.18738/t8/uoes4s/fuwd79
title: Vid2RealPhase2_P18_vlp16_000068.bin
DOI: 10.18738/t8/uoes4s/i0nlf0
title: Vid2RealPhase2_P18_vlp16_000409.bin
DOI: 10.18738/t8/uoes4s/4t3gl9
title: Vid2RealPhase2_P18_vlp16_000475.bin
DOI: 10.18738/t8/uoes4s/jykhf4
title: Vid2RealPhase2_P18_vlp16_000303.bin
DOI: 10.18738/t8/uoes4s/b4uo3n
title: Vid2RealPhase2_P18_vlp16_000304.bin
DOI: 10.18738/t8/uoes4s/bx5swj
title: Vid2RealPhase2_P18_vlp16_000014.bin
DOI: 10.18738/t8/uoes4s/0gzj1o
title: Vid2RealPhase2_P18_vlp16_000472.bin
DOI: 10.18738/t8/uoes4s/sroonr
title: Vid2RealPhase2_P18_vlp16_000013.bin
DOI: 10.18738/t8/uoes4s/6gz5qm
title: Vid2RealPhase2_P18_vlp16_000220.bin
DOI: 10.18738/t8/uoes4s/pu9610
title: Vid2RealPhase2_P18_vlp16_000137.bin
DOI: 10.18738/t8/uoes4s/kxvwd9
title: Vid2RealPhase2_P18_vlp16_000269.bin
DOI: 10.18738/t8/uoes4s/s6asta
title: Vid2RealPhase2_P18_vlp16_000378.bin
DOI: 10.18738/t8/uoes4s/phvoqx
title: Vid2RealPhase2_P18_vlp16_000447.bin
DOI: 10.18738/t8/uoes4s/t5ddkf
title: Vid2RealPhase2_P18_vlp16_000026.bin
DOI: 10.18738/t8/uoes4s/5cbjq2
title: Vid2RealPhase2_P18_vlp16_000215.bin
DOI: 10.18738/t8/uoes4s/aswjdf
title: Vid2RealPhase2_P18_vlp16_000331.bin
DOI: 10.18738/t8/uoes4s/0t3hzr
title: Vid2RealPhase2_P18_vlp16_000212.bin
DOI: 10.18738/t8/uoes4s/pcle6y
title: Vid2RealPhase2_P18_vlp16_000105.bin
DOI: 10.18738/t8/uoes4s/smjfxt
title: Vid2RealPhase2_P18_vlp16_000102.bin
DOI: 10.18738/t8/uoes4s/1645nt
title: Vid2RealPhase2_P18_vlp16_000179.bin
DOI: 10.18738/t8/uoes4s/lzzrsz
title: Vid2RealPhase2_P18_vlp16_000021.bin
DOI: 10.18738/t8/uoes4s/bzgmq3
title: Vid2RealPhase2_P18_vlp16_000336.bin
DOI: 10.18738/t8/uoes4s/fmxqrc
title: Vid2RealPhase2_P18_vlp16_000440.bin
DOI: 10.18738/t8/uoes4s/8zs1wu
title: Vid2RealPhase2_P18_vlp16_000432.bin
DOI: 10.18738/t8/uoes4s/eg2ykr
title: Vid2RealPhase2_P18_vlp16_000053.bin
DOI: 10.18738/t8/uoes4s/fae0pz
title: Vid2RealPhase2_P18_vlp16_000344.bin
DOI: 10.18738/t8/uoes4s/n2az9g
title: Vid2RealPhase2_P18_vlp16_000395.bin
DOI: 10.18738/t8/uoes4s/4iip2x
title: Vid2RealPhase2_P18_vlp16_000082.bin
DOI: 10.18738/t8/uoes4s/b2ggqr
title: Vid2RealPhase2_P18_vlp16_000260.bin
DOI: 10.18738/t8/uoes4s/b71euo
title: Vid2RealPhase2_P18_vlp16_000177.bin
DOI: 10.18738/t8/uoes4s/wwvpul
title: Vid2RealPhase2_P18_vlp16_000338.bin
DOI: 10.18738/t8/uoes4s/07dna1
title: Vid2RealPhase2_P18_vlp16_000028.bin
DOI: 10.18738/t8/uoes4s/tsletw
title: Vid2RealPhase2_P18_vlp16_000170.bin
DOI: 10.18738/t8/uoes4s/vh3fva
title: Vid2RealPhase2_P18_vlp16_000267.bin
DOI: 10.18738/t8/uoes4s/5eidkl
title: Vid2RealPhase2_P18_vlp16_000054.bin
DOI: 10.18738/t8/uoes4s/ijcnpv
title: Vid2RealPhase2_P18_vlp16_000449.bin
DOI: 10.18738/t8/uoes4s/nwvfrk
title: Vid2RealPhase2_P18_vlp16_000392.bin
DOI: 10.18738/t8/uoes4s/edxsrw
title: Vid2RealPhase2_P18_vlp16_000343.bin
DOI: 10.18738/t8/uoes4s/edxxzp
title: Vid2RealPhase2_P18_vlp16_000435.bin
DOI: 10.18738/t8/uoes4s/dqgkhc
title: Vid2RealPhase2_P18_vlp16_000039.bin
DOI: 10.18738/t8/uoes4s/wuahwj
title: Vid2RealPhase2_P18_vlp16_000085.bin
DOI: 10.18738/t8/uoes4s/2d8a9v
title: Vid2RealPhase2_P18_vlp16_000458.bin
DOI: 10.18738/t8/uoes4s/5xvuac
title: Vid2RealPhase2_P18_vlp16_000161.bin
DOI: 10.18738/t8/uoes4s/h5hoxx
title: Vid2RealPhase2_P18_vlp16_000276.bin
DOI: 10.18738/t8/uoes4s/tikivx
title: Vid2RealPhase2_P18_vlp16_000352.bin
DOI: 10.18738/t8/uoes4s/2dn0sp
title: Vid2RealPhase2_P18_vlp16_000045.bin
DOI: 10.18738/t8/uoes4s/meoo98
title: Vid2RealPhase2_P18_vlp16_000094.bin
DOI: 10.18738/t8/uoes4s/liqnpr
title: Vid2RealPhase2_P18_vlp16_000424.bin
DOI: 10.18738/t8/uoes4s/pkok83
title: Vid2RealPhase2_P18_vlp16_000383.bin
DOI: 10.18738/t8/uoes4s/gmqjdy
title: Vid2RealPhase2_P18_vlp16_000093.bin
DOI: 10.18738/t8/uoes4s/kshqjm
title: Vid2RealPhase2_P18_vlp16_000355.bin
DOI: 10.18738/t8/uoes4s/iekpw8
title: Vid2RealPhase2_P18_vlp16_000042.bin
DOI: 10.18738/t8/uoes4s/j3dged
title: Vid2RealPhase2_P18_vlp16_000384.bin
DOI: 10.18738/t8/uoes4s/ix1sj1
title: Vid2RealPhase2_P18_vlp16_000423.bin
DOI: 10.18738/t8/uoes4s/wq9smt
title: Vid2RealPhase2_P18_vlp16_000329.bin
DOI: 10.18738/t8/uoes4s/1q12c6
title: Vid2RealPhase2_P18_vlp16_000166.bin
DOI: 10.18738/t8/uoes4s/k37id4
title: Vid2RealPhase2_P18_vlp16_000271.bin
DOI: 10.18738/t8/uoes4s/0xs7zx
title: Vid2RealPhase2_P18_vlp16_000114.bin
DOI: 10.18738/t8/uoes4s/zc6b9c
title: Vid2RealPhase2_P18_vlp16_000203.bin
DOI: 10.18738/t8/uoes4s/jcau6s
title: Vid2RealPhase2_P18_vlp16_000030.bin
DOI: 10.18738/t8/uoes4s/jq9kix
title: Vid2RealPhase2_P18_vlp16_000480.bin
DOI: 10.18738/t8/uoes4s/nfllhb
title: Vid2RealPhase2_P18_vlp16_000327.bin
DOI: 10.18738/t8/uoes4s/spxeyh
title: Vid2RealPhase2_P18_vlp16_000451.bin
DOI: 10.18738/t8/uoes4s/dnkp3v
title: Vid2RealPhase2_P18_vlp16_000320.bin
DOI: 10.18738/t8/uoes4s/l8jszg
title: Vid2RealPhase2_P18_vlp16_000168.bin
DOI: 10.18738/t8/uoes4s/biluao
title: Vid2RealPhase2_P18_vlp16_000037.bin
DOI: 10.18738/t8/uoes4s/sqjjj1
title: Vid2RealPhase2_P18_vlp16_000456.bin
DOI: 10.18738/t8/uoes4s/cojghz
title: Vid2RealPhase2_P18_vlp16_000278.bin
DOI: 10.18738/t8/uoes4s/jg2xrv
title: Vid2RealPhase2_P18_vlp16_000204.bin
DOI: 10.18738/t8/uoes4s/qxcd2t
title: Vid2RealPhase2_P18_vlp16_000113.bin
DOI: 10.18738/t8/uoes4s/ffyt4r
title: Vid2RealPhase2_P18_vlp16_000463.bin
DOI: 10.18738/t8/uoes4s/g0qwih
title: Vid2RealPhase2_P18_vlp16_000315.bin
DOI: 10.18738/t8/uoes4s/grzr0z
title: Vid2RealPhase2_P18_vlp16_000002.bin
DOI: 10.18738/t8/uoes4s/78ncrn
title: Vid2RealPhase2_P18_vlp16_000231.bin
DOI: 10.18738/t8/uoes4s/o0clif
title: Vid2RealPhase2_P18_vlp16_000369.bin
DOI: 10.18738/t8/uoes4s/ahrtxf
title: Vid2RealPhase2_P18_vlp16_000126.bin
DOI: 10.18738/t8/uoes4s/lovnbz
title: Vid2RealPhase2_P18_vlp16_000418.bin
DOI: 10.18738/t8/uoes4s/ilee63
title: Vid2RealPhase2_P18_vlp16_000079.bin
DOI: 10.18738/t8/uoes4s/ukhuqx
title: Vid2RealPhase2_P18_vlp16_000236.bin
DOI: 10.18738/t8/uoes4s/4swzar
title: Vid2RealPhase2_P18_vlp16_000005.bin
DOI: 10.18738/t8/uoes4s/iyavbt
title: Vid2RealPhase2_P18_vlp16_000121.bin
DOI: 10.18738/t8/uoes4s/ndcq7z
title: Vid2RealPhase2_P18_vlp16_000464.bin
DOI: 10.18738/t8/uoes4s/x3z8w2
title: Vid2RealPhase2_P18_vlp16_000312.bin
DOI: 10.18738/t8/uoes4s/mkvpfx
title: Vid2RealPhase2_P18_vlp16_000416.bin
DOI: 10.18738/t8/uoes4s/dgoq0c
title: Vid2RealPhase2_P18_vlp16_000077.bin
DOI: 10.18738/t8/uoes4s/i8xetc
title: Vid2RealPhase2_P18_vlp16_000238.bin
DOI: 10.18738/t8/uoes4s/m25t6r
title: Vid2RealPhase2_P18_vlp16_000360.bin
DOI: 10.15468/dl.kgeyuy
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eragrostis venustula Cope",
 "Continent is Africa"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008190-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18738/t8/uoes4s/duzolc
title: Vid2RealPhase2_P18_vlp16_000244.bin
DOI: 10.18738/t8/uoes4s/fowbbz
title: Vid2RealPhase2_P18_vlp16_000182.bin
DOI: 10.18738/t8/uoes4s/7rcqyf
title: Vid2RealPhase2_P18_vlp16_000153.bin
DOI: 10.18738/t8/uoes4s/oydyxs
title: Vid2RealPhase2_P18_vlp16_000295.bin
DOI: 10.5281/zenodo.13920093
title: EB_Composite: Knowledge Graph of the First Eight Editions of the Encyclopaedia Britannica (1768-1860) Following the Heritage Textual Ontology

description: The EB_Composite Knowledge Graph represents information from the first eight editions of the Encyclopaedia Britannica (1768–1860), structured using the Heritage Textual Ontology (HTO). It extends our previously developed EB_HQ by incorporating multiple text sources, such as the National Library of Scotland and the Nineteenth-Century Knowledge Project, for each edition. A particular source is added, comprising of post-corrected textual content generated using deep-learning-based OCR error correction methods. These sources presents different levels of text quality, and EB_Composite enables researchers to compare these texts, and track how they are digitised or extracted from these sources.

The EB_Composite captures 4150776 RDF triples. Same as EB_HQ, it provides structured metadata and descriptions for each edition, volume, and term. By integrating information across different editions, it enables smooth tracking of concept evolution over time. Additionally, the dataset features semantic connections to external knowledge bases such as DBpedia and Wikidata, enhancing links to modern information and supporting more comprehensive analyses.

Designed to support historical research, this dataset offers rich semantic data for exploring the development of knowledge and concepts in the Encyclopaedia Britannica. It categorizes terms as either Articles or Topics, each with detailed metadata extracted from METS and ALTO XML files. OCR errors common in historical texts have been mitigated using deep-learning-based corrections.
DOI: 10.5281/zenodo.13920094
title: EB_Composite: Knowledge Graph of the First Eight Editions of the Encyclopaedia Britannica (1768-1860) Following the Heritage Textual Ontology

description: The EB_Composite Knowledge Graph represents information from the first eight editions of the Encyclopaedia Britannica (1768–1860), structured using the Heritage Textual Ontology (HTO). It extends our previously developed EB_HQ by incorporating multiple text sources, such as the National Library of Scotland and the Nineteenth-Century Knowledge Project, for each edition. A particular source is added, comprising of post-corrected textual content generated using deep-learning-based OCR error correction methods. These sources presents different levels of text quality, and EB_Composite enables researchers to compare these texts, and track how they are digitised or extracted from these sources.

The EB_Composite captures 4150776 RDF triples. Same as EB_HQ, it provides structured metadata and descriptions for each edition, volume, and term. By integrating information across different editions, it enables smooth tracking of concept evolution over time. Additionally, the dataset features semantic connections to external knowledge bases such as DBpedia and Wikidata, enhancing links to modern information and supporting more comprehensive analyses.

Designed to support historical research, this dataset offers rich semantic data for exploring the development of knowledge and concepts in the Encyclopaedia Britannica. It categorizes terms as either Articles or Topics, each with detailed metadata extracted from METS and ALTO XML files. OCR errors common in historical texts have been mitigated using deep-learning-based corrections.
DOI: 10.18738/t8/uoes4s/3bojhf
title: Vid2RealPhase2_P18_vlp16_000243.bin
DOI: 10.18738/t8/uoes4s/diynk6
title: Vid2RealPhase2_P18_vlp16_000185.bin
DOI: 10.18738/t8/uoes4s/bntjqs
title: Vid2RealPhase2_P18_vlp16_000154.bin
DOI: 10.18738/t8/uoes4s/mcyyz4
title: Vid2RealPhase2_P18_vlp16_000292.bin
DOI: 10.18738/t8/uoes4s/9gazoo
title: Vid2RealPhase2_P18_vlp16_000411.bin
DOI: 10.18738/t8/uoes4s/v0qlyt
title: Vid2RealPhase2_P18_vlp16_000070.bin
DOI: 10.6084/m9.figshare.27098209.v1
title: Novel insights into sevoflurane-induced developmental neurotoxicity mechanisms

description: <b>Aim:</b> This study explores Sevoflurane (Sevo)-induced neurotoxicity mechanisms in neonates through transcriptome sequencing and models. <b>Methods:</b> Seven-day-old mice were exposed to 3% Sevo, and hippocampal tissue was collected for analysis of differentially expressed lncRNAs and mRNAs compared with normal mice. MiR-152-3p was selected, and the interaction between H19, USP30, and miR-152-3p was explored in BV2 microglial cells and mouse hippocampal neurons. <b>Results:</b> Sevo disrupts mitochondrial autophagy via USP30 upregulation, exacerbating neurotoxicity and activating NLRP1 inflammasome-mediated inflammation. <b>Conclusion:</b> Sevo neurotoxicity is mediated through the H19/miR-152-3p/USP30 axis, implicating microglial regulation of neuronal pyroptosis. The study investigates the neurotoxicity of Sevoflurane (Sevo) in neonatal mice, focusing on the H19/miR-152-3p/USP30 signaling axis. Utilized both <i>in vitro</i> (BV2 microglial cells) and <i>in vivo</i> (neonatal mice) models to explore the role of H19, miR-152-3p, and USP30 in Sevo-induced neurotoxicity. Sevo exposure leads to significant overexpression of H19 in the hippocampal tissues of neonatal mice, contributing to neurotoxicity by upregulating USP30. Demonstrated that H19 competitively binds to miR-152-3p, which upregulates USP30, inhibiting mitophagy and promoting microglial cell activation. USP30 upregulation leads to the activation of the NLRP1 inflammasome in microglial cells, resulting in the release of inflammatory cytokines IL-1β and IL-18, exacerbating neuronal pyroptosis. Silencing USP30 mitigates Sevo-induced neurotoxicity by enhancing mitophagy, reducing microglial activation, and decreasing inflammatory responses. The H19/miR-152-3p/USP30 axis is a key mediator in Sevo-induced developmental neurotoxicity, offering insights into potential therapeutic targets for mitigating neurotoxic effects.
DOI: 10.18738/t8/uoes4s/6hna0j
title: Vid2RealPhase2_P18_vlp16_000367.bin
DOI: 10.18738/t8/uoes4s/nr02nf
title: Vid2RealPhase2_P18_vlp16_000128.bin
DOI: 10.18738/t8/uoes4s/42kios
title: Vid2RealPhase2_P18_vlp16_000266.bin
DOI: 10.18738/t8/uoes4s/4ggyew
title: Vid2RealPhase2_P18_vlp16_000029.bin
DOI: 10.18738/t8/uoes4s/bo0fk9
title: Vid2RealPhase2_P18_vlp16_000171.bin
DOI: 10.5281/zenodo.13920084
title: Datasets for KGDDP-biomarker

description: The following Gene Expression Omnibus (GEO) accession numbers were used: GSE169568 and GSE126124. The drug-target interaction (DTI) data was sourced from the DrugBank database, while the protein-protein interaction (PPI) and Gene Ontology data were obtained from the UniProt database. Pathway data was retrieved from the Reactome database. 

1. **Knowledge Graph Data** (`kg`):   - **File**: `kg_del_selfloop.csv`   - **Description**: This dataset contains the knowledge graph data that represents relationships between biological entities, including drugs, proteins, and diseases. It is crucial for understanding the interconnections and enhancing the predictive capabilities of the model.

2. **Negative Pathway-Protein Relationships** (`pro_path_neg_sp`):   - **File**: `human_neg_pathpro.csv`   - **Description**: This dataset provides information about negative relationships between pathways and proteins. It helps to identify potential non-relevant or inhibitory connections that may impact disease diagnosis.

3. **Negative Disease-Protein Interactions** (`dpi_neg`):   - **File**: `neg_dpi_df_t10.csv`   - **Description**: This dataset includes negative interactions between diseases and proteins, which assists in refining the model by removing misleading associations that do not contribute positively to predictions.

4. **Feature Profiles** (`fp_df`):   - **File**: `bdki_db_gdsc_fp.csv`   - **Description**: This dataset contains feature profiles of various samples, which are used to train the model. It includes a variety of biomarker data that is essential for accurate disease prediction.

5. **Expression Triples** (`exp_triples`):   - **File**: `exp_triples.csv`   - **Description**: This dataset consists of expression triples representing relationships between genes and their expression levels. It is crucial for capturing the expression profiles of samples and understanding their role in disease pathology.

6. **Expression Graph Triples** (`exp_triples_graph`):   - **File**: `exp_graph_triples.csv`   - **Description**: This dataset contains graph triples that depict relationships within the expression data. It is used to construct a graph representation of the data, which is essential for graph-based analysis techniques.

7. **Expression Input Data** (`exp_input`):   - **File**: `se_exp_input.csv`   - **Description**: This dataset serves as the input for the expression data model, containing necessary information to perform predictions based on gene expression levels.

8. **Sample Information** (`dls`):   - **File**: `sample_info.csv`   - **Description**: This dataset includes sample information, including diagnosis details. It is used to filter out samples without diagnosis data and plays a critical role in training and validating the model.
DOI: 10.18738/t8/uoes4s/hwy2ia
title: Vid2RealPhase2_P18_vlp16_000448.bin
DOI: 10.18738/t8/uoes4s/sbrn6x
title: Vid2RealPhase2_P18_vlp16_000055.bin