cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rvm2sxs7br.1
title: mCherry-RPB1 protein stability measurement in HCT116 cells using bleach-chase

description: mCherry-RPB1 half-life measurements were made using the ‘bleach-chase’ method. This involves partially bleaching cells expressing a fluorescent protein and monitoring the rate of fluorescence recovery over time to infer protein turnover dynamics.

Imaging was performed on a Nikon Ti2 microscope with CSU-W1 spinning disk 72-90h after siRNA transfection, using a 20X/0.75NA objective and Hamamatsu ORCA-Fusion C14440-20UP camera (image pixel size 325nm x 325nm). The entire imaging experiment was automated using Nikon JOBS. Pre- and post-bleach imaging used 561nm laser excitation and a 617/73 nm bandpass emission filter, for ‘bleached’ and ‘unbleached control’ regions with the same well (9 imaging sites each). Bleach steps were performed using a widefield light source, from a mercury vapour lamp with 635/60 nm filter. In all cases, seven z-planes were acquired with a spacing of 2.0 µm. Two wells (ARMC5 siRNA and scrambled siRNA) were imaged sequentially for each timepoint. Allowing 10 min between frames resulted in a time between frames of approximately 14.4 min. Images were acquired for 6 frames before the bleach step and recovery was monitored for 9 h after the bleach step. The mean loss of mCherry-RPB1 intensity induced by the bleach pulse was 43 ± 1% – optimised to minimise bleach pulse duration and to retain the ability to visualise cells using mCherry signal after bleaching. An example movie is included.

Experiments were repeated on four different days, with two replicates performed each day. Cell confluency was monitored post hoc by examining the change in nuclear area distributions over time (nuclear area decreases with cell number as cultures become close to confluent). Wells that showed a decrease in mean nuclear area with cell number during post-bleach acquisition were excluded, due to a confounding effect of cell morphology changes on mean fluorescence intensity measurements and the possibility of changes in cell growth rate at confluency. After excluding these data, four experimental replicates were used for protein half-life measurements, across three repeats of the experiment on different days.
DOI: 10.17632/pfvn4kyn77.1
title: Zero emission trucks production monitoring in early 2023

description: The global challenge of reducing the negative impact of the transport sector on the environment today meets the need to maintain a high level of mobility, both in delivering goods and in passenger transport. The purpose of this study is to investigate the availability of electric trucks in the market as an alternative to the current ways of transporting goods. Several groups of cars are included in the study, the base consists of cars with a capacity of over 7.5 tons (trucks), the second dominant group is trucks with a capacity less than 7.5 tons, which is also combined with family car transport with more than five seats and similar cars (sprinters and vans). In the research, car manufacturers, produced model names, technical parameters of models (usable battery, acceleration, top speed, range, efficiency, fastcharge), year of start of model production, market prices of models have been collected. The database reflects information on 63 producer and 142 models. At the moment, it is the most complete database, which includes the technical parameters of the investigated truck (as the other databases, for example, focus only on the "truck" group) and the only one that allows you to compare the prices of the trucks. The obtained data can be used to select a vehicle based on energy consumption, manufacturer, parameters, etc. criteria. But, above all, the database, in connection with the use of traditional cars, reflects that the e-truck market is currently only in the stage of formation and, for the time being, is not capable of significantly changing the existing situation. This raises the question of the need to act to promote the transition to environmentally friendly solutions.
DOI: 10.17632/gkhjd7c6rn
title: LDHU3_20.1270

description: Hypothetical protein - conserved
Leishmania donovani (HU3 strain)
DOI: 10.17632/gkhjd7c6rn.1
title: LDHU3_20.1270

description: Hypothetical protein - conserved
Leishmania donovani (HU3 strain)
DOI: 10.17632/v9rj38hvv8.1
title: LINF_330029900

description: Phosphoglycerate mutase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/rmm4jtxmpp.1
title: Data for the article "Design of an equilibrative nucleoside transporter subtype 1 inhibitor for pain relief"

description: Data for the manuscript entitled "Design of an equilibrative nucleoside transporter subtype 1 inhibitor for pain relief". In summary, we conducted chemical synthesis, protein 3D structure determination, in vitro radioactive binding and uptake experiments, imaging, electrophysiological studies, as well as animal behavioral and pharmacokinetic studies. We provide the data that were used in this manuscript.
DOI: 10.17632/792bf4hxp2.1
title: Supplementary material: Port-Hamiltonian formulations for the modeling, simulation and control of fluids

description: The files attached include videos of the simulations presented in the paper.
DOI: 10.17632/dw7cs9rk3t.1
title: LINF_360012000

description: ribonuclease H2A
Leishmania infantum (strain JPCM5)
DOI: 10.17632/jktnp63gjg.1
title: LINF_360012700

description: Leucine-rich repeat protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/zh7bx2my7f.1
title: Efficacy and safety of tildrakizumab for the treatment of moderate-to-severe plaque psoriasis of the scalp: A multicenter, randomized, double-blind, placebo-controlled, Phase 3b study supplemental material

description: This is the supplemental material for the manuscript titled, "Efficacy and safety of tildrakizumab for the treatment of moderate-to-severe plaque psoriasis of the scalp: A multicenter, randomized, double-blind, placebo-controlled, Phase 3b study" by Gebauer K. et al., 2024.
DOI: 10.17632/d95fvg4dnm.1
title: Subtomogram averaging of helical filaments in cryo-electron tomography

description: EM processing data related to Zhang et al., 2024 are deposited here. This paper describes a step-by-step protocol to guide subtomogram averaging of helical filaments imaged by cryo-electron tomography. The workflow includes data processing in Warp, IMOD, Dynamo, RELION, M, as well as intermediate steps in MATLAB and other software. The dataset deposited here encompass IMOD alignment data of 20 tilt series (folder: files_for_imod; .xf, taSolution.log, and mdoc files imported to Warp), coordinate files used at 4 times binning (6.78 Ang/pix) in Dynamo (folder: 4bin), coordinate files used at 2 times binning (3.39 Ang/pix) in TOM/AV3 (folder: 2bin), coordinate files used at unbin (1.69 Ang/pix) before RELION refinement as a preparation step (folder: unbin_prep), and coordinate files as the input to and output from RELION and M refinement at unbin (folder: unbin_relion).
DOI: 10.17632/snyyfknw56.1
title: CoCG Road Condition - Detection Dataset (CoCGRCDD)

description: The Camera on Car Grille Road Condition - Detection Dataset (CoCGRCDD) contains frames from video recordings of road pavements in Poland. The data was obtained from a USB Logitech Brio camera placed on the radiator grille of the car. The annotation process was carried out using CVAT software. Annotations in the form of classes and bounding boxes was saved in MS COCO format (annotations/instances.json). The dataset contains the following types of road pavement defects:
• C01 - Longitudinal cracks and pronounced discontinuity of the material structure in the longitudinal axis;
• C02 - Transverse cracks and pronounced discontinuity of the material structure in the transverse axis;
• C03 - Alligator cracks and delamination of the surface layer occurring in their area;
• C04 - holes on the road surface and larger cavities erosion (such as in the area of cracks).

The set consists of 2110 frames from the footage, of which 325 have no road surface defects, which allows us to check the occurrence of the model's prediction quality based on the occurrence of false positives.
Each frame in the dataset is additionally annotated (annotations/additional_info.json) with the occurrence of: shadow, painting, outlandish (object that should not be on the road e.g. sand, leaves, etc.), path milling, grain or binder defects, manhole.
DOI: 10.15468/dl.7gzdue
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-101.46181 4.91289,-51.90573 4.91289,-51.90573 35.45823,-101.46181 35.45823,-101.46181 4.91289))",
 "TaxonKey is Centrophorus uyato (Rafinesque, 1810)"
 ]
}

 The dataset includes 57 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000246-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c38tz6
title: Occurrence Download

description: A dataset containing 5631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "TaxonKey is Apis mellifera Linnaeus, 1758"
 ]
}

 The dataset includes 5631 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000245-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/vm5xpvdbps.1
title: Supporting Data for "Assortative mating at the innate immune locus TLR3 in song sparrows: opposites do not attract"

description: Supporting Data for "Assortative mating at the innate immune locus TLR3 in song sparrows: opposites do not attract". OTU tables for all haplotypes, all haplotypes except the longest terminal branch, all haplotypes except the second longest terminal branch. Pairwise UniFrac distances between male-female dyads breeding at the study site in the same year.
DOI: 10.17632/pfkbjvjvsc.1
title: DFT data, Salting-out effect of quaternary alkylammonium cations on protein solubility derived from the excluded-volume and hydrophobicity of cations

description: DFT data for this study was calculated using the Becke three-parameter Lee–Yang–Parr (B3LYP) functional implemented in the Gaussian 16 Program package.
DOI: 10.17632/r9fsfgs3zn.1
title: LINF_090015600

description: calmodulin; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.z4q3gt
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.31657 -18.49521,-69.26737 -18.49521,-69.26737 -13.53808,-76.31657 -13.53808,-76.31657 -18.49521))",
 "HasGeospatialIssue is false",
 "TaxonKey is Thalassarche bulleri (Rothschild, 1893)",
 "Year 2021-2025"
 ]
}

 The dataset includes 63 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000247-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/6wpbmx3srd.3
title: Gold in sulfide fluids revisited

description: The files contain (i) results of thermodynamic calculations of Au solubility and solute speciation which were used to build figures, (ii) results of the literature Au solubility data regression with OptimA program, (iii) data.txt file with HKF EoS parameters suitable for the export to the Unitherm database of the HCh software, (iv) raw experimental data.
DOI: 10.17632/5p2tkmz5jj.1
title: LINF_330041800

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xsg5m994tn.1
title: LINF_330042600

description: H1 histone-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/dwkh4yfm7f.2
title: Evaluation of Online Inquiry Competences of Chilean Elementary School Students

description: In 2023, a cross-sectional study was conducted to assess elementary students' online inquiry competences (OCI) within a quasi-realistic context. Our diagnostic framework encompasses a spectrum of information challenges within the natural sciences, stratified by grade level (i.e., 4th, 6th, and 8th grades), question category (i.e., closed-ended, descriptive, causal explanation, verification, prediction, difficulty (i.e., easy, intermediate, difficult), and generalization), and challenge type (i.e., open-ended response and source evaluation). To engage students in the diagnostic process while maintaining control over the information resources accessed during the search sessions, we used the Trivia game [1], powered by the NEURONE ecosystem [2]. Accordingly, both the challenges and the repository of information resources (e.g., web pages, images, and videos) were loaded onto the Trivia platform. This facilitated an experiential learning environment for students, simulating search experiences similar to those provided by contemporary search engines such as Google and Bing.
The diagnostic was administered to 169 students from three public schools and 110 students from a private educational institution within the metropolitan area of Chile. This work presents the resulting dataset, which encompasses behavioral, affective, and cognitive data derived from 1055 search sessions.

REFERENCES
1. González-Ibáñez R, Chourio-Acevedo L, Gacitúa D, Márquez C, Mellado J, Villarreal F, et al. Let’s Play: Toward an Effective Approach to Assess Online Inquiry Competences at School Level. In: 2021 40th International Conference of the Chilean Computer Science Society (SCCC). 2021. p. 1–8.
2. González-Ibáñez R, Gacitúa D, Sormunen E, Kiili C. Neurone: oNlinE inqUiRy experimentatiON systEm. Proc Assoc Inf Sci Technol. 2017;54(1):687–9.
DOI: 10.17632/hkzgstr9wp.1
title: Dataset: First reliable report of the Nassarius sinarum as an invasive species, from Yeongsan River, Korea

description: Dataset: First reliable report of the Nassarius sinarum as an invasive species, from Yeongsan River, Korea.
Fig. 1-3, Fig. S. 1-5, Original size images.
DOI: 10.17632/59ng6845dd.1
title: Invertase-producing bacteria and the sweetness content of sweet potato

description: • The sucrose content of Cilembu sweet potato in each environment showed significant differences at each storage time. The sucrose content of sweet potatoes two weeks after storage (M2) showed an increase between 78.04% to 92.93%. In contrast, four weeks after storage (M4) decreased between 6.82 to 20.85%. 
• The glucose content in Cilembu sweet potatoes in various environments showed significant differences at each storage time. The glucose content decreased during storage, namely 18.80% to 29.69% in M2, and 13.33% to 27.78% in M4. 
• The fructose content in M0 and M2 showed a significant difference, while M4 showed an no significant difference. The fructose content decreased during storage, namely around 25.64% to 33.64% at M0, while at M4 the decrease ranged from 31.03% to 44.44%.
• The population of invertase-producing bacteria decreased during storage, where the decrease was very significant, namely 42.27% to 51.20% in M2, and in M4 around 89.46% to 94.08%.
• Invertase activity in M2 showed an increase in all environments, with a range of 18.57% to 26.28%. Meanwhile, M4 showed a decrease in invertase activity of around 26.11% to 33.94%.
• Sucrose content had a negative and significant correlation with fructose (-0.56) and invertase-producing bacteria (-0.58). Glucose levels had a significant and positive correlation with fructose levels (0.91) and invertase-producing bacteria (0.88). Fructose levels also had a significant and positive correlation with invertase-producing bacteria (0.95).
DOI: 10.17632/vrxnh3dzv5.2
title: Volumetric Behaviour Analysis (VBA) - 1PHTR1

description: This data package comprises a point cloud file obtained using a LiDAR scan of a public high-rise building in Hong Kong. The research project record designates this flat interior as "Case PHTR1". The data scan was conducted through a 12-minute walk-through of the high-rise apartment using a Leica-brand BLK2Go model 3D environment scanner. 
The scan provides a detailed description of the layout and arrangement of furniture within the interior of the public high-rise apartment. The data accurately depicts the physical state of the house, enabling the interpretation of the scan to describe the housing conditions of super-tall and super-dense housing units, including their spatial utilisation and user contents. Access to the data is granted only after a one-year period of restriction to ensure the protection of individuals' personal information. The data is provided with the purpose of future research examining housing behaviour in connection to spatial use.
DOI: 10.17632/wr3yw42nrd.1
title: LINF_330042700

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/54w8dh8wpp
title: LDHU3_20.1320

description: Hypothetical protein - conserved
Leishmania donovani (HU3 strain)
DOI: 10.17632/54w8dh8wpp.1
title: LDHU3_20.1320

description: Hypothetical protein - conserved
Leishmania donovani (HU3 strain)
DOI: 10.17632/p939j227xd.1
title: NSF_JasonSauer

description: Data collected and models assembled as part of NSF Fellowship Award 2204589
DOI: 10.17632/fjv4kxnfzz.1
title: LINF_090018900

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/7j6b6y48jw.1
title: Micro-scale potentiodynamic polarisation (log(j)) curves of 316L stainless steel

description: This database comprises 5 Potentiodynamic Polarisation (PP) datasets. Each dataset consists of a pair of CSVs: 1 file containing the values of the applied potential E (Vs Ag/AgCl); and 1 containing the corresponding log of the current density log(j) (µA/cm²) values.

This database was deployed as the source dataset in the following scientific article, accepted for publication in npj Materials Degradation journal on 25 September 2023:
"Estimating pitting descriptors of 316L stainless steel by machine learning and statistical analysis".
Leonardo Bertolucci Coelho1,2,∗, Daniel Torres1, Vincent Vangrunderbeek2, Miguel Bernal1, Gian Marco Paldino3, Gianluca Bontempi3, Jon Ustarroz 1,2
1 ChemSIN – Chemistry of Surfaces, Interfaces and Nanomaterials, Université libre de Bruxelles (ULB), Brussels, Belgium
2 Research Group Electrochemical and Surface Engineering (SURF), Vrije Universiteit Brussel, Brussels, Belgium
3 Machine Learning Group (MLG), Université libre de Bruxelles (ULB), Brussels, Belgium
*leonardo.bertolucci.coelho@ulb.be

These datasets are almost identical to the ones available at https://data.mendeley.com/datasets/78rz8vw46x/2
The only difference is that eventual missing j values were filled with an iterative imputer (Python 3.7 language). The IterativeImputer class (from sklearn.impute) models each feature with missing values as a function of other features and uses that estimate for imputation.
DOI: 10.17632/r8y88zhdvv.3
title: Spatiotemporal change of carbon sink through chemical weathering of rocks over the Tibetan Plateau under climate warming: Dataset

description: This dataset is the data for a manuscript entitled "Spatiotemporal change of carbon sink through chemical weathering of rocks over the Tibetan Plateau under climate warming".
DOI: 10.17632/k8jzr9kyzk.1
title: LINF_090019600

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/9ngtns3nxz.1
title: LINF_360013000

description: RNA-binding protein Torus | ZC3H31
Leishmania infantum (strain JPCM5)
DOI: 10.17632/nfzgdcw8d4.1
title: HUMAN-ELEPHANT CONFLICT: TEMPORAL CHANGES AND ASSOCIATED FACTORS IN THE TROPICAL FOREST OF SOUTHERN INDIA

description: Human-elephant conflict data were collected from 14 villages located in Mudumalai Tiger Reserve from Nov-2006 to Mar-2008. The locations of crop-raiding incidences were obtained using the GPS (Garmin e-trex). All the crop fields in a village with the owner of the land, land area, crop protection method, crops, planting months, fruit trees, and nearest water resources available within the village were located. The area of cultivation, the stage of the crop, and the proportion of damage were assessed quantitatively. The crop protection method, extent, and elephant damage were assessed.
DOI: 10.17632/v862shb73b.1
title: FARMING-INTEGRATED WASTE TO ENERGY INITIATIVE WITH YOUTH CAPACITY BUILDING IN RURAL AREAS OF LIMPOPO PROVINCE

description: The research work prepared to sensitive community of practice on the benefits of biogas technology
DOI: 10.17632/tzc88kcnwv.3
title: Intangible benefits of nature-based solutions for wastewater treatment

description: This dataset is part of a research project on the eco-cultural wastewater treatment technologies in New Zealand. The research hypothesis posits that eco-cultural wastewater treatment systems, which integrate environmental, social and cultural dimensions, provide significant intangible benefits that are often overlooked in traditional economic evaluations. This study aims to quantify these benefits within the framework of total economic valuation framework. Data were sourced from the Ecosystem Services Valuation Database (ESVD) and relevant literature on NBS for wastewater treatment. 

The database contains detailed information about various studies evaluating the intangible benefits of Nature-Based Solutions (NBS) for wastewater treatment. It includes data from the Ecosystem Services Valuation Database (ESVD) and other relevant studies, focusing on non-market valuation estimates. Key Columns in the Database:
-Study ID: Unique identifier for each study.
-OB: Additional identifier or grouping code.
-ESVD2.0_Biome: Biome or ecosystem type (e.g., Coastal systems, Marine).
-ES_Text: Ecosystem service described in text (e.g., water filtration).
-ES: Ecosystem service category (e.g., Waste treatment).
-Value Groups: Grouping of value types (e.g., Waste treatment and processing) based on the total economic valuation framework
-Countries: Country where the study was conducted.
-Site Area Unit: Unit of the site area (e.g., hectare).
-Site Area: Size of the study area.
-Valuation Methods: Methods used for valuation (e.g., Contingent Valuation (CE)).
-Value Year: Year the value was estimated.
-Original Value: Original estimated value.
-NZD: Converted value in 2023 New Zealand Dollars (NZD).
-Title: Title of the study.

Key Findings: 
1. Diversity of Ecosystem Services: The studies cover a wide range of ecosystem services, including water filtration, habitat for species, recreational opportunities, and storm protection. This demonstrates the multifaceted benefits of NBS beyond traditional wastewater treatment.
2. Valuation Methods: Common methods used include Contingent Valuation (CE) and other non-market valuation approaches. These methods help quantify benefits that are not typically traded in markets, such as cultural and recreational values.
3. Geographical Spread: The studies span various countries, indicating a global interest in NBS and their benefits. However, a significant portion of the data pertains to specific regions like Saint Martin, which may influence the generalizability of the findings.
4. Economic Valuation: The values of intangible benefits are converted to 2023 NZD for consistency. This allows for easier comparison across studies and helps in understanding the economic significance of these benefits in a current context.