cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/xm7skmn6tn
title: Data on the impact of The-Optimal-Lymph-Flow program on lymphedema symptoms in breast cancer survivors

description: Many breast cancer survivors face long-term postoperative challenges as a result of developing lymphedema symptoms and chronic lymphedema. The-Optimal-Lymph-Flow (TOLF) program is an intervention based on physiological-cognitive-behavioral principles that teaches patients self-management strategies to activate lymphatic system and promote lymph flow to decrease lymphedema symptoms, reduce the risk and severity of lymphedema. This data article presents the data obtained from a randomized clinical trial aimed at evaluating the use of TOLF program as an early intervention for breast cancer survivors at risk for lymphedema on improving lymphedema symptom experience and optimizing lymph fluid levels.
Between January 2019 and June 2020, a total of 92 eligible patients were randomly assigned to either the TOLF intervention group or the control group. Data was collected in terms of patients’ baseline demographic and clinical characteristics, pre- and post-intervention lymphedema symptom experience (i.e., the number of symptoms, symptom severity, symptom distress, and the impact of symptoms on patients’ activities of daily living) and lymph fluid levels (indicated by the limb volume differences). The Breast Cancer and Lymphedema Symptom Experience Index was used to measure lymphedema symptom experience and circumferential arm measurement was used to estimate limb volume differences. The data comparison between intervention and control groups at baseline and study endpoint were provided in this publication. 
The data shared can be used as a comparative reference in clinical settings or experimental studies to help determine the optimal exercise modalities in breast cancer survivors to reduce lymphedema risk and symptom sufferings, and provide a basis for further research related to this topic.
DOI: 10.3535/1bg-e27-aks
title: †Platyceras Conrad, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5kk-fwv-ez8
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3079011/2541132
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/pex-hwf-9jd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sag-0yq-22b
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16732534.v1
title: Al2O3_e45-e90.7z

description: Abundance and distribution of oxide abundances and Mg# values generated from KAGUYA multiband imager (MI) spectra<br>
DOI: 10.6084/m9.figshare.20972143.v1
title: dataset.docx

description: This document entails data collected from reviews and content of the three videos selected for dissertation.
DOI: 10.17632/6ymh76hmzm
title: 16S rRNA Amplicon Sequences of Anopheles gambiae Midgut Samples

description: Glyphosate (GLYPH) is an herbicide that is commonly used in agriculture and is the active ingredient in Roundup. Studies have shown that ingestion of GLYPH by honeybees increases the susceptibility of the insects to natural infection, a phenomenon attributed to perturbation of the resident gut microbiome. One of the aims of this study was to determine if GLYPH has similar effects on the microbiome of Anopheles gambiae mosquitoes. Mosquitoes were drugged with varying doses of GLYPH, and their gut microbiota were analyzed by 16S rRNA amplicon sequencing. Results indicate that while GLYPH does not alter the bacterial load of the A. gambiae gut microbiome, the makeup of the community is altered in a dose-independent manner.
DOI: 10.3535/31a-63d-cce
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zr7-bqg-0ke
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27013879.v2
title: <b>Absorption enhancement and shielding effect of brown organic coating on black carbon aerosols</b>

description: The data for Figure 1-3Our paper has been published in <b>npj Climate and Atmospheric Science (npj CAS)</b>. The title of our paper is <b>"Absorption enhancement and shielding effect of brown organic coating on black carbon aerosols"</b>, and you can access the published version at the following link:🔗 https://www.nature.com/articles/s41612-025-00989-yWe sincerely appreciate all the support and feedback that contributed to this work!
DOI: 10.3535/ddq-s60-l84
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mt0-a2p-py5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3079012/2541133
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/gfy-4k0-2gv
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ncw-9j9-3kc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3x6-mmw-dlc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t5e-smj-pnj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0g2-7ep-6qr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wcb-66c-6zl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3079014/2541134
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/aty-f5k-r3q
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f0l-f02-g4s
title: †Conolichas eichwaldi (Niezskowski, 1857)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28256132.v1
title: Astrocyte ensembles manipulated with AstroLight tune cue-motivated behavior

description: Astrocytes, dynamic cells crucial to brain function, have traditionally been overshadowed by the emphasis on neuronal activity in regulating behavior. Unlike neurons, organized into ensembles that encode different brain representations, astrocytes have long been considered a homogeneous population. This is partly due to the lack of tools to map and manipulate specific subsets of astrocytes based on their functional activity, obscuring the extent of their specialization in circuits. Here, using AstroLight, a tool that translates astrocytic activity-mediated calcium signals into gene expression in a light-dependent manner, we have identified <i>an astrocytic ensemble</i>, a functionally specified subset of astrocytes that emerges upon activity during cue-motivated behaviors in the Nucleus Accumbens, an integrator hub in the reward system. Furthermore, through gain and loss-of-function manipulations, we demonstrate that this ensemble is essential for modulating cue-reward associations. These findings highlight the specialization of astrocytes into ensembles and their fine-tuning role in shaping salient behavior.
DOI: 10.3535/s4m-tm9-wvy
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v25-ptd-0cc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/8bg3jkpgzp
title: Execution Data Logs of Euler Supercomputer

description: This dataset contains over nine years worth of accounting records from the Euler supercomputer located at CIEMAT (Centre for Energy, Environment, and Technology Research) in Madrid, Spain. It reflects the full operation period of this machine, spanning the period between November 2008 and March 2018. The Euler database follows the version 2.2 of the Parallel Workload Archive format. This data are (up to the author’s knowledge) the largest publicly available full workload dataset of a supercomputer already structured, making it more easy for system users and developers to inspect the data. Euler cluster database comprises a rich source of information regarding scientific users’ behavior at computing. The data is of value within the context of helping to better size the next HPC generation of supercomputers and to attain a high, steady resource occupation and the best revenue of the funding in terms of scientific results. Data is also useful for system administrators and developers of HPC-related, mostly those involved in developing new algorithms for job scheduling, fault tolerance and minimization of energy consumption, just to mention a few. Additionally, this data allow the HPC community to carry out new research on topics such as artificial intelligence methodologies applied to supercomputing, test of resource manager simulators for clusters, etc.
DOI: 10.17632/dmkydsxgd3
title: MCNNTUNES: Tuning Shower Monte Carlo generators with machine learning

description: The parameters tuning of event generators is a research topic characterized by complex choices: the generator response to parameter variations is difficult to obtain on a theoretical basis, and numerical methods are hardly tractable due to the long computational times required by generators. Event generator tuning has been tackled by parametrization-based techniques, with the most successful one being a polynomial parametrization. In this work, an implementation of tuning procedures based on artificial neural networks is proposed. The implementation was tested with closure testing and experimental measurements from the ATLAS experiment at the Large Hadron Collider.
DOI: 10.17632/mdftp5p4fw
title: Soil water retention curves of hydrate-bearing sediment, frozen soil, and unsaturated soil

description: Samples of hydrate-bearing sediment, frozen soil, and unsaturated soil were prepared using the same host porous medium, Ningming clay, primarily composed of montmorillonite. The soil water retention curves (SWRCs) for the different samples were obtained by measuring their matric suction (Pc) and gravimetric water content (w). For frozen soil, matric suction was calculated based on temperature (T), while for hydrate-bearing sediment, it was determined using the temperature depression (Tb - T). Overall, the three porous media exhibit similar water retention capacities. The Excel file provides the data from tests and calculations.
DOI: 10.3535/bm0-3zr-erc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/enz-pde-wvq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3079015/2541135
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/9ed-97r-j8p
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c7p-p0b-80h
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/mwnkydtz2w
title: Data for: Controls on Leaf Wax Fractionation and δ²H Values in Tundra Vascular Plants from Western Greenland

description: Hydrogen isotope ratios of leaf waxes are used to reconstruct past hydroclimate because they are a reflection of meteoric water, but the interpretation of these signatures from ancient sedimentary archives relies on a thorough understanding of the drivers of modern isotope variability and controls on fractionation. These studies are particularly valuable in the high latitudes, regions especially vulnerable to rapid climate change and increasingly used for plant-based proxy reconstructions of past hydroclimate, but also where modern vegetation is understudied compared to the lower latitudes. Here we investigate δ2H values from leaf wax n-alkanes of vascular tundra plants in the Kangerlussuaq area of western Greenland. We collected a variety of common tundra species to study possible interspecies variability in δ2H values including dwarf shrubs (Betula nana, Empetrum hermaphroditum, Salix glauca, and Rhododendron lapponica), forbs and graminoids (Vaccinium uliginosum, R. tomentosum, and Calamagrostis lapponica), a horsetail species (Equisetum arvense), and a submerged aquatic macrophyte from a local lake (Stuckenia filiformis). Using previously measured leaf and stem waters to help constrain potential drivers of leaf wax n-alkane δ2H values, we find that the overall net fractionation (εapp) from the studied species is -75 ± 20‰. The εapp at Kangerlussuaq is consistent with other studies of Arctic vegetation that find smaller εapp than from the majority of lower latitude sites. The fractionation of leaf water and xylem water (εlw/xw) and the fractionation of xylem water and precipitation (εxw/p) are both relatively constant, suggesting stable leaf and soil related fractionations across species. Estimates of biosynthetic fractionation (εbio), as evidenced from the fractionation of the δ2H values of n-alkanes and leaf water (εwax/lw), are not constant across species as sometimes assumed, and are small (average of εbio is -120 ± 27‰) compared to many published estimates. This supports a significant role in εbio shaping the εapp in this high latitude setting, where lipid biosynthesis may be driving differences in n-alkane δ2H values. This finding suggests that lipids in the Kangerlussuaq plants studied rely on the use of some proportion of different hydrogen sources during lipid synthesis, such as stored NADPH. The cumulative results of this survey of Kangerlussuaq area n-alkane δ2H values and water-wax fractionations suggest that fractionation in the high latitudes during the short summer growing season may play an important role in governing the small εapp compared to many low latitude sites. Better understanding of appropriate εapp and the importance of εbio in controlling plant wax fractionation from the high latitudes is necessary for future reconstructions of hydroclimate using leaf wax δ2H values in these regions.
DOI: 10.3535/533-lr6-hwb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j6z-21x-b3x
title: †Cymbularia Koken, 1896

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/6pwd2s9rff
title: The liver x receptor is selectively modulated by different ligands to differentially alter breast cancer metastasis-associated myeloid immune cells - Supplemental Data

description: This is supplemental data corresponding to the manuscript titled The liver x receptor is selectively modulated by different ligands to differentially alter breast cancer metastasis-associated myeloid immune cells.

Authors: 
Liqian Ma1, Hashni Epa Vidana Gamage1, Srishti Tiwari1, Chaeyeon Han1, Madeline A Henn1, Natalia Krawczynska1, Payam Dibaeinia2, Graeme J. Koelwyn3,†, Anasuya Das Gupta1, Rafael Ovidio Bautista Rivas1,  Chris L. Wright4, Fangxiu Xu4, Kathryn J. Moore3,5, Saurabh Sinha2,6,7 and Erik R. Nelson1,6-10,*

Affiliations:
1 Department of Molecular and Integrative Physiology, University of Illinois Urbana-Champaign, Urbana, IL
2 Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, IL
3 NYU Cardiovascular Research Center, Leon H. Charney Division of Cardiology, Department of Medicine, New York University School of Medicine, New York, NY
4 Roy J. Carver Biotechnology Center DNA Services, University of Illinois Urbana-Champaign, Urbana, IL
5 Department of Cell Biology, New York University School of Medicine, New York, NY
6 Cancer Center at Illinois, University of Illinois Urbana-Champaign, Urbana, IL
7 Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL
8 Division of Nutritional Sciences, University of Illinois Urbana-Champaign, Urbana, IL
9 University of Illinois Cancer Center, University of Illinois at Chicago, Chicago, IL
10 Beckman Institute for Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, IL



*To whom correspondence and reprint requests should be addressed: Erik R. Nelson. University of Illinois at Urbana-Champaign. 407 S Goodwin Ave (MC-114), Urbana, IL, 61801. Phone: 217-244-5477. Fax: 217-333-1133. ORCiD: 0000-0002-8887-1905. E-mail: enels@illinois.edu
DOI: 10.17632/wzhwrrvcm4
title: JAK of All Trades: Novel Off-Label Use of the Systemic JAK Inhibitor Upadacitinib As An Adjunct to Systemic Biologic Therapy for Various Immune-Mediated Inflammatory Diseases of the Skin

description: Combining two targeted systemic therapies (biologics and JAK inhibitors) may provide a more significant reduction in disease severity and improvement in quality of life (QoL); however, no rigorous studies have assessed such an approach. In this retrospective case series, we highlight the novel off-label use of UPA, a selective JAK1 inhibitor, as an adjunct to different systemic biologics for a variety of skin-related IMIDs.
DOI: 10.3535/93n-nnd-hh5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c61-97n-0tt
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15023418.v1
title: Data

description: Data used in analysis of choice experiment.
DOI: 10.6084/m9.figshare.25754706.v1
title: GToTree Vibrio, custom SCG-set, nucleotides

description: Tree output from example code making a Vibrio tree here: https://hackmd.io/@AstrobioMike/gtotree-vibrio
DOI: 10.6084/m9.figshare.4476323.v2
title: Dataset for the article "Genome-wide analysis of differential RNA editing in epilepsy"

description: The study design used for the genome-wide differential RNA-Edited (RE) association analysis (GWRAS) of epilepsy was a case control analysis using a mouse model of acquired symptomatic TLE. High-throughput sequencing of mRNA (RNA-seq) was carried out in whole hippocampus samples from 100 epileptic (files starting with Epileptic_mice_) and 100 control (Control_mice_) littermate mice (same age) as previously described (Johnson et al. 2015). All mice underwent continuous video monitoring for 14 consecutive days beginning 28 days following pilocarpine induced status epilepticus (SE) to document the occurrence and frequency of spontaneous behavioural epileptic seizures, as previously described (Mazzuferi et al. 2012). All RNA-seq profiles generated in epileptic and control mice (n=200) were initially used for the prediction of RNA editing events and the identified RE events were then further analysed in epileptic and control mice to identify differential RE (DRE) between cases and controls.<br><br>The data provided here are raw sequence reads in bam file format. Files contains reads for the identified RNA-edited sites. Files with names: <b><br><br>Epileptic_mice_</b>* : are files containing reads for the set of pilocarpine treated Epileptic mice (N=100)<br><br><b>Control_mice_</b>* : are files containing reads for set of mice that were NOT treated and used as controls in this study (N=100)<br><br><b>Table_expression.xlsx</b>: is an excel file containing information regarding differential expression and expression levels in Epileptic cases and controls<br><br>Here, * is a number between 1 and 100<br>
DOI: 10.17632/4rm3v4m2wk
title: Zenith Wet Delay and others for year (2019)

description: These are 505 stations that have full records of year 2019 with 6-hour resolution. These data have been extracted from the VMF1 websites from the operated stations.
DOI: 10.25582/data.2024-03.3079016/2541136
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/0k1-mvz-7ld
title: †Maclurites Lesueur, 1818

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dnj-58r-pf3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/y5fbmfzch2
title: Data for: Pb-isotopic constraints on the source of A-type Suites: Insights from the Hiltaba Suite - Gawler Range Volcanics Magmatic Event, Gawler Craton, South Australia

description: - Appendix A: Geochemical and Sm-Nd isotopic data used in this work. - Appendix B: All LA-ICP-MS analyses of Primary and Secondary Standards. - Appendix C: All LA-ICP-MS analyses of alkali feldspar. - Appendix D: U-Pb zircon geochronology
DOI: 10.3535/vnp-dry-xn4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/hsp8h8wv5c
title: Data-set-20231102

description: data
DOI: 10.3535/9ks-hyy-xwk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bva-zds-g8c
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11953746.v1
title: nhmmr result files

description: Result files of nhmmer against six Apis MLEs using Dromar hmm profile.
DOI: 10.6084/m9.figshare.22128404.v1
title: Mastigamoeba abducta transcriptome assembly

description: Raw Illumina RNA-Seq reads were quality and adapter trimmed by BBDuk v36.92 (part of BBTools: https://jgi.doe.gov/data-and-tools/bbtools/). Trimmed reads were assembled using Trinity v2.8.6 with default parameters.
DOI: 10.25582/data.2024-03.3079018/2541137
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/9mh-gbg-d9d
title: †Holtedahlina Foerste, 1924

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p0m-6la-4lp
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/xvmwtj8hr9
title: Data for: Bonded and Additively Manufactured Crack Retarders: A comparative study of damage tolerance properties

description: Delamination growth in the 2024-T351 M(T) specimen with: AISI 301 ultrasonically consolidated crack retarders, CF UD and AISI 301 bonded crack retarders. Data were collected using the Flir SC660 and optical excitation through 2x 400 W halogen lamps. Collected data were processed using Thermography Signal Reconstruction method.
DOI: 10.3535/acm-6j4-pc0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dha-3sm-9kb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.10324529.v5
title: Example Input Files for LowPath

description: Data used to generate figures in "Geometry and topology of estuary and braided river channel networks automatically extracted from topographic data"
DOI: 10.17632/p4xcd32ycn
title: Supplementary Table S1. 

description: Articles included in review
DOI: 10.3535/0wr-b8x-dxx
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sys-ptk-ze7
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.