cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.310m5qj
title: Data from: Are Cecropia trees ecosystem engineers? The effect of decomposing Cecropia leaves on arthropod communities

description: Ecosystem engineers structure species richness and the composition of
 biological communities. Although several studies have uncovered the
 importance of engineering environments, few studies have evaluated the
 effect of pioneering plants as ecosystem engineers, especially in tropical
 environments. When dead, Cecropia leaves become architecturally complex,
 acquiring a tridimensional shape due to desiccation, and may facilitate
 other organisms. Here we evaluate the role of these dead leaves in
 structuring species richness, abundance, biomass, and composition of
 macroinvertebrate communities on leaf litter in six protected areas of
 Brazilian Atlantic Rainforest. Predators were larger, more abundant, and
 presented higher standing stock in the presence of dead Cecropia leaves
 compared to soil debris (i.e., common leaf litter); however, detritivores
 had the opposite patterns. This resulted in shifts in body size structure
 of the assemblage, thus causing inversion of biomass pyramids to top-heavy
 in advanced stages of Cecropia leaves desiccation. Dead Cecropia leaves
 did not influence species richness and abundance of species, but they
 influenced the biomass of detritivores and predators in the communities.
 Our results demonstrated that pioneer trees can act as ecosystem
 engineers, by facilitating communities of invertebrate predators. In
 addition, our results suggest that the presence of Cecropia leaves can
 mediate trophic interactions and shape food web structure on the forest
 floor.
description: Data_Biotropica_Are_Cecropia_Trees
DOI: 10.5061/dryad.m7v5t98
title: Data from: Pair-bonding influences affective state in a monogamous fish species

description: In humans, affective states are a key component in pair-bonding,
 particularly in the early stage of a relationship. Pairing with a
 high-quality partner elicits positive affective states which, in turn,
 validate and reinforce the mate choice. Affective states thus strongly
 affect pair stability and future reproductive success. We propose
 generalizing the link between affective states and pair-bonding to
 encompass other monogamous species exhibiting biparental care, chiefly
 where the reproductive success of the pair critically depends on the
 coordination between partners. The convict cichlid Amatitlania siquia is a
 monogamous fish species that forms long-lasting pairs with strong
 cooperation between parents for parental care. In this species, we showed
 that females paired with their non-preferred male had lower reproductive
 success than those paired with their preferred male. We then transposed
 the judgement bias paradigm, previously used in other animal species, to
 assess objectively affective states in fish. Females that were assigned
 their non-preferred partner exhibited pessimistic bias, which indicates a
 negative affective state. By contrast, females that were assigned their
 preferred partner did not exhibit changes in their affective state. Our
 results highlight that the influence of pair-bonding on affective states
 is not human-specific and can also be observed in non-human species.
description: laubu_original_datasetsThe three original datasets from Laubu et al. in txt format. The attached 'readme' file explains the meaining of each variable name and value.
DOI: 10.5061/dryad.pt80482
title: Data from: A metadata approach to evaluate the state of ocean knowledge: strengths, limitations, and application to Mexico

description: Climate change, mismanaged resource extraction, and pollution are
 reshaping global marine ecosystems with direct consequences on human
 societies. Sustainable ocean development requires knowledge and data
 across disciplines, scales and knowledge types. Although several
 disciplines are generating large amounts of data on marine
 socio-ecological systems, such information is often underutilized due to
 fragmentation across institutions or stakeholders, limited standardization
 across scale, time or disciplines, and the fact that information is often
 not searchable within existing databases. Compiling metadata, the
 information which describes existing sets of data, is an effective tool
 that can address these challenges, particularly when metadata
 corresponding to multiple datasets can be combined to integrate, organize
 and classify multidisciplinary data. Here, using Mexico as a case study,
 we describe the compilation and analysis of a metadatabase of ocean
 knowledge that aims to improve access to information, facilitate
 multidisciplinary data sharing and integration, and foster collaboration
 among stakeholders. We also evaluate the knowledge trends and gaps for
 informing ocean management. Analysis of the metadatabase highlights that
 past and current research in Mexico focuses strongly on ecology and
 fisheries, with biological data more consistent over time and space
 compared to data on human dimensions. Regional imbalances in available
 information were also evident, with most available information
 corresponding to the Gulf of California, Campeche Bank and Caribbean and
 less available for the central and south Pacific and the western Gulf of
 Mexico. Despite existing knowledge gaps in Mexico and elsewhere, we argue
 that systematic efforts such as this can often reveal an abundance of
 information for decision-makers to develop policies that meet key
 commitments on ocean sustainability. Surmounting current cross-scale
 social and ecological challenges for sustainability requires
 transdisciplinary approaches. Metadatabases are critical tools to make
 efficient use of existing data, highlight and address strengths and
 deficiencies, and develop scenarios to inform policies for managing
 complex marine social-ecological systems.
description: Mexico Marine Research
 Metadata DatabaseThis project compiled
 metadata on available datasets produced by marine research in Mexico. The
 data is categorized by region, theme, species (when applicable), and
 research fields. This dataset corresponds to the associated peer-reviewed
 paper, the living database can be accessed at
 http://infoceanos.conabio.gob.mx.Mexico Metadata Database
 DataDryad.csv
DOI: 10.5061/dryad.dp70360
title: Data from: Assessing thermal adaptation using family-based association and FST-outlier tests in a threatened trout

description: Discovering genetic markers associated with phenotypic or ecological
 characteristics can improve our understanding of adaptation and guide
 conservation of key evolutionary traits. The Lahontan cutthroat trout
 (Oncorhynchus clarkii henshawi) of the northern Great Basin Desert, USA,
 demonstrated exceptional tolerance to high temperatures in the desert
 lakes where it resided historically. This trait is central to a
 conservation hatchery effort to protect the genetic legacy of the nearly
 extinct lake ecotype. We genotyped full‐sibling families from this
 conservation broodstock and samples from the only two remaining, thermally
 distinct, native lake populations at 4,644 new single nucleotide
 polymorphisms (SNPs). Family‐based genome‐wide association testing of the
 broodstock identified nine and 26 SNPs associated with thermal tolerance
 (p &lt; 0.05 and p &lt; 0.1), measured in a previous thermal
 challenge experiment. Genes near the associated SNPs had complex functions
 related to immunity, growth, metabolism and ion homeostasis. Principal
 component analysis using the thermotolerance‐related SNPs showed
 unexpected divergence between the conservation broodstock and the native
 lake populations at these loci. FST outlier tests on the native lake
 populations identified 18 loci shared between two or more of the tests,
 with two SNPs identified by all three tests (p &lt; 0.01); none
 overlapped with loci identified by association testing in the broodstock.
 A recent history of isolation and the complex genetic and demographic
 backgrounds of Lahontan cutthroat trout probably limited our ability to
 find shared thermal tolerance loci. Our study extends the still relatively
 rare application of genomic tools testing for markers associated with
 important phenotypic or environmental characteristics in species of
 conservation concern.
description: Amish_2019_LCT_thermal_tolerance_archiveSampling locations, a list of the RAD loci used in the analysis, as well as individual phenotype data from the Robinson et al. (2008) study of thermal tolerance are posted on Dryad.
DOI: 10.15468/dl.vdsst4
title: Occurrence Download

description: A dataset containing 1009 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((105 20,170 20,170 70,105 70,105 20))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Salix rorida"
 ]
}

 The dataset includes 1009 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001694-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.4qn2338
title: Data from: The relationship of body condition, superoxide dismutase, and superoxide with sperm performance

description: Sperm competition theory predicts a negative correlation between somatic
 investment in traits that aid in pre- and postcopulatory sexual selection.
 Sperm performance is critical for postcopulatory success but are
 susceptible to damage by free radicals such as superoxide radicals
 generated during mitochondrial respiration (mtSOx). Males can ameliorate
 damage to spermatozoa by investing in the production of antioxidants, like
 superoxide dismutase (SOD), which may act as a mechanistic link for pre
 and postcopulatory trade-offs. Some male Australian, colour-polymorphic
 painted dragon lizards (Ctenophorus pictus) possess a yellow throat patch
 (bib) that females prefer over non-bibbed males and are also more likely
 to win male-male contests indicating that males with bibs are better at
 monopolizing females. We tested whether the sperm performance in
 non-bibbed males was superior to that of bibbed males as predicted by
 sperm competition theory. We show that blood cell mtSOx levels are
 negatively correlated with SOD activity in the plasma in all males early
 in the breeding season but SOD was lower in bibbed males. Non-bibbed males
 maintain a positive correlation between body condition and SOD activity
 over time while bibbed males do not. Overall sperm performance was not
 different between the bib-morphs, however, higher mtSOx levels were
 negatively correlated with sperm performance in bibbed males, but not of
 non-bibbed males. Together these data suggest physiological associations
 between body condition, SOD activity and sperm performance are linked to
 the expression of a yellow gular patch, which may be related to intrinsic
 differences in metabolism of bibbed versus non-bibbed males
description: Dragons pictus
 ROS_SPSS_To submit BEHECOL
DOI: 10.5061/dryad.668365q
title: Data from: Opening the tap: increased riverine connectivity strengthens marine food web pathways.

description: Reduction of ecosystem connectivity has long-lasting impacts on food webs.
 Anadromous fish, which migrate from marine to freshwater ecosystems to
 complete reproduction, have seen their historically larger ecosystem role
 undercut by widespread riverine habitat fragmentation and other impacts
 mainly derived from anthropogenic sources. The result has been extensive
 extirpations and increased susceptibility to a suite of environmental
 factors that currently impede recovery. Under this present-day context of
 reduced productivity and connectivity, aggressive management actions and
 enforcement of catch limits including bycatch caps and complete moratoria
 on harvest have followed. What remains less understood are the
 implications of changes to food webs that co-occurred. What benefits
 restoration could provide in terms of ecosystem functioning in relation to
 economic costs associated with dam removal and remediation is unknown and
 can limit the scope and value of restoration activities. Here we employ,
 historical landscape-based biomass estimates of anadromous alosine for the
 first time in an ecosystem modeling of the Northeast US large marine
 ecosystem (LME), to evaluate the value of improving connectivity by
 measuring the increase in energy flow and population productivity. We
 compared a restored alosine model to a contemporary model, analyzing the
 impacts of the potential increase of connectivity between riverine and
 oceanic systems. We observed changes in ecosystem functional structure and
 widespread ecosystem benefits for fisheries and conservation efforts. A
 key advantage was the potential for a 26% biomass increase of piscivorous
 with high economic value, including Atlantic cod, and for a 69% increase
 for species of conservation concern such as pelagic sharks, seabirds and
 marine mammals. Our study highlights the benefits of increased
 connectivity between freshwater and ocean ecosystems. We demonstrate the
 significant role anadromous forage fish could play in improving specific
 fisheries and overall ecosystem functioning, mainly through the
 diversification of species capable of transferring primary production to
 upper trophic levels, adding to benefits associated with their
 restoration.
description: Contemporary Alosine
 Biomass Model_EwE_input_parametersThis file contains all
 input parameters to the EwE Ecopath CAB model.Dryad_CAB_EwE_input_parameters.xlsxRestored Alosine Biomass_EwE_input_parametersThis file contains all the Restored Alosine Biomass EwE Ecopath model.Dryad_RAB_EwE_input_parameters.xlsx
DOI: 10.5061/dryad.v3b36nh
title: Data from: Perceived threat to paternity reduces likelihood of paternal provisioning in house wrens

description: Biparental care is a critical and, occasionally, unequally shared
 obligation that ensures that young survive to maturity. Such care may be
 complicated in systems in which one parent, typically the male, is unsure
 of his genetic relatedness to the young. Males may reduce paternal
 provisioning when full paternity is not assured, as occurs in mating
 systems in which females engage in extra-pair copulations. Moreover, other
 factors independent of extra-pair matings, such as male personality
 traits, likely also affect the level of paternal care. In this study, we
 determined the effect of a paternity threat event (i.e., a conspecific or
 a heterospecific territory intrusion) and male personality (i.e., the
 level of aggressiveness) on provisioning effort by male house wrens
 (Troglodytes aedon). Males were more likely to attack a conspecific
 intruder than a heterospecific intruder. Males that were exposed to a
 conspecific intruder were less likely to provision young at all. Of those
 males that did feed the young in their nest, male aggressiveness did not
 relate to feeding effort. These findings suggest that the likelihood of
 paternal care is reduced by perceived threats to paternity, but that the
 costs of not feeding potentially multi-sired young are high and feeding
 efforts are unrelated to male personality.
description: RAD-et-al-PatThrt_README
 for all data filesThis file explains all
 of the information contained in the data files associated with DiSciullo
 RA, Thompson CF, and Sakaluk SK. 2019. Perceived threat to paternity
 reduces likelihood of paternal provisioning in house
 wrens.RAD-et-al-PatThrt_README.txtRAD-et-al-PatThrt_intruder trial dataThese are the behavioral data scored from videos of the paternity threat/intruder trials.RAD-et-al-PatThrt_intruder.csvRAD-et-al-PatThrt_provisioning effort dataThese are the behavioral data scored from videos of the provisioning effort on 4 or 5 days after the first nestling of the nest hatched.RAD-et-al-PatThrt_prov.csvRAD-et-al-PatThrt_provisioing effort-by-sexThese are the same behavioral data found in the RAD-et-al-PatThrt_prov.csv file, but the number of all prey items brought by the male and female has been summed within the file, and the data have been reformatted to make it easier for analysis in R.RAD-et-al-PatThrt_prov-by-sex.csvRAD-et-al-PatThrt_nestlings dataThese are morphological data gathered from nestlings 11 days after the first nestling hatched (i.e., brood-day 11)RAD-et-al-PatThrt_nestlings.csvRAD-et-al-PatThrt_analysesR file containing the code for all statistical analyses and figures found in the manuscript partially annotated within the file.
DOI: 10.17632/hh9wr3ydd7.2
title: Code: Towards Operational Tree-Level Timber Quality and Volume Estimation Using UAV Multi-Sensor Remote Sensing

description: LiDAR-related code for the estimation of stem straightness. Additionally, code for the segmenteation and stem diameter estimation based on previous work added.
DOI: 10.6084/m9.figshare.31159240
title: SydTek Scholars Canon (v1.0)

description: <b>SydTek Scholars Canon (v1.0)</b> is a <b>public, versioned canon + governance repository skeleton</b> for <b>SydTek Scholars (Mt. Gilead, NC)</b>—built to serve as a <b>K–12 covenant-school blueprint</b> and an <b>accreditation foundation</b>. This release is the <b>initial public structure</b> intended for transparency, reproducibility, and long-term citation.PurposeThis dataset provides a standardized “canon layer” for a school organization: mission/creed alignment, governance guardrails, policy + handbook templates, curriculum structure, assessment doctrine, and an accreditation self-study evidence framework—so the school can grow without losing consistency or accountability.What’s included in this ZIP<b>Repository scaffolding</b> for the SydTek Scholars Canon<b>Canon / governance baseline</b> (structure for mission, doctrine, accountability)<b>Policies + handbooks templates</b> (planned pack: safeguarding, privacy, AI integrity, acceptable use, admissions/tuition, etc.)<b>Curriculum structure guidance</b> (scope & sequence + Hebrew thread placeholder)<b>Assessment/outcomes framework</b> (portfolio doctrine placeholder)<b>Accreditation self-study outline</b> + <b>evidence index templates</b><b>Citation + release discipline</b><code>CITATION.cff</code> (citable metadata)<code>CHANGELOG.md</code> (version history; <b>v1.0 released 2026-01-22</b>)Public accountability + privacy boundaryThis canon is intended to be <b>public</b> for transparency and accountability.<br><b>No student records</b> are stored in this release; the canon is designed to keep private records out of the public repository.Versioning<b>Version:</b> v1.0<b>Release date:</b> 2026-01-22<b>Changelog:</b> <code>CHANGELOG.md</code>How to citeUse the <code>CITATION.cff</code> information and the Figshare DOI for this deposited ZIP.<br>
DOI: 10.6084/m9.figshare.31159240.v1
title: SydTek Scholars Canon (v1.0)

description: <b>SydTek Scholars Canon (v1.0)</b> is a <b>public, versioned canon + governance repository skeleton</b> for <b>SydTek Scholars (Mt. Gilead, NC)</b>—built to serve as a <b>K–12 covenant-school blueprint</b> and an <b>accreditation foundation</b>. This release is the <b>initial public structure</b> intended for transparency, reproducibility, and long-term citation.PurposeThis dataset provides a standardized “canon layer” for a school organization: mission/creed alignment, governance guardrails, policy + handbook templates, curriculum structure, assessment doctrine, and an accreditation self-study evidence framework—so the school can grow without losing consistency or accountability.What’s included in this ZIP<b>Repository scaffolding</b> for the SydTek Scholars Canon<b>Canon / governance baseline</b> (structure for mission, doctrine, accountability)<b>Policies + handbooks templates</b> (planned pack: safeguarding, privacy, AI integrity, acceptable use, admissions/tuition, etc.)<b>Curriculum structure guidance</b> (scope & sequence + Hebrew thread placeholder)<b>Assessment/outcomes framework</b> (portfolio doctrine placeholder)<b>Accreditation self-study outline</b> + <b>evidence index templates</b><b>Citation + release discipline</b><code>CITATION.cff</code> (citable metadata)<code>CHANGELOG.md</code> (version history; <b>v1.0 released 2026-01-22</b>)Public accountability + privacy boundaryThis canon is intended to be <b>public</b> for transparency and accountability.<br><b>No student records</b> are stored in this release; the canon is designed to keep private records out of the public repository.Versioning<b>Version:</b> v1.0<b>Release date:</b> 2026-01-22<b>Changelog:</b> <code>CHANGELOG.md</code>How to citeUse the <code>CITATION.cff</code> information and the Figshare DOI for this deposited ZIP.<br>
DOI: 10.5061/dryad.kc48bq9
title: Data from: Karyotype and genome size variation in genus Ajuga L. (Ajugoideae–Lamiaceae)

description: Chromosome number changes and karyotype evolution play an important role
 in plant genome diversification and eventually in speciation. The genus
 Ajuga L. (Lamiaceae) has approximately 50 species distributed in temperate
 to subtropical regions. Four of these species are currently recognized in
 Korea (A. decumbens Thunb., A. multiflora Bunge, A. nipponensis Makino and
 A. spectabilis Nakai). Understanding the karyotype evolution in Ajuga has
 been hampered by the small size of their chromosomes and symmetrical
 karyotypes. Here we used classic Feulgen staining to establish chromosome
 numbers and construct karyotypes of the four species of Ajuga recognized
 in Korea and flow cytometry was used to study their variation in genome.
 The chromosome number of all investigated plants was 2n = 32. Still, the
 2C DNA content ranged from 2.18 pg (A. decumbens) to 4.53 pg (A.
 multiflora). While the chromosome numbers were the same for all
 investigated species, the genome size variation could potentially be used
 as a taxonomic marker.
description: Karyotype characters in
 the genus Ajuga L. (Chromosome size measurement)Karyotype characters and
 chromosome numbers in the genus Ajuga L.
DOI: 10.5061/dryad.3ng4b2g
title: Data from: Neuropathy with vascular endothelial growth factor receptor tyrosine kinase inhibitors

description: Objective: To explore the association of peripheral neuropathy with
 vascular endothelial growth factor receptor tyrosine kinase inhibitors
 (VEGFR-TKIs) use in cancer patients. Methods: Published data search up to
 November 2018 reporting peripheral neuropathy in cancer patients treated
 with VEGFR-TKIs was performed. The primary outcome was presence of
 peripheral neuropathy at the end of the trial. Random-effects
 meta-analysis was performed to estimate Relative Risk (RR) of individual
 treatment. Results: Thirty Randomized Clinical Trials (RCTs) including
 12,490 cancer patients were included in this analysis. Eight studies
 compared VEGFR-TKIs with placebo and the remaining studies compared
 VEGFR-TKIs with the standard chemotherapeutic regimen. When compared
 against placebo VEGFR-TKIs were associated with a higher risk of
 peripheral neuropathy (RR=1.76, 95% CI 1.13-2.75, p-value 0.01).
 Similarly, a stronger association was noted for sensory neuropathy with
 VEGFR-TKIs monotherapy (RR = 1.61; 95% CI 1.09-2.37, p = 0.02). Risk of
 peripheral neuropathy with VEGFR-TKIs was higher even when they were
 compared against control (either placebo or standard chemotherapeutic
 agents); RR=1.08, 95% CI 1.01-1.15, p-value 0.03. High-grade neuropathy
 (RR 1.28, 95% CI 1.06-1.54, p-value &lt;0.01) and high-grade sensory
 neuropathy (RR 1.38, 95% CI 1.09-1.74, p-value &lt;0.01) were noted
 more frequently with VEGFR-TKIs treatment compared against control.
 Conclusions: VEGFR-TKIs therapy appeared to be associated with an
 increased risk of neuropathy.
description: Appendices and
 supplementary materialAppendices and
 Supplementary Materials