cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.pfiwpc
title: Evolutionary history of tyrosine-supplementing endosymbionts in pollen-feeding Dasytinae (Coleoptera: Melyridae) beetles

description: Mutualistic relationships with bacteria can facilitate the colonization of ecological niches. However, detailed comparative studies of symbiont presence and function across host taxa are needed to unravel the evolutionary origins and dynamics of symbioses and their contributions to host fitness. Here, we investigated the evolutionary history and function of the symbiosis between pollen-feeding soft-winged flower beetles (Melyridae, Dasytinae) and their intracellular gamma-proteobacterial partner ‘Candidatus Dasytiphilus stammeri’. Reconstructing the distribution of the symbiont within the Dasytinae phylogeny unraveled a long-term coevolution, originating from a single acquisition event with subsequent host-symbiont codiversification, but also several independent symbiont losses. The analysis of 20 different symbiont genomes revealed that their genomes are severely eroded. However, the universally retained shikimate pathway indicates that the core metabolic contribution to their hosts is the provision of tyrosine for cuticle sclerotization and melanization. Despite the high degree of similarity in gene content and order across symbiont strains, the capacity to synthesize additional essential amino acids and vitamins and to recycle urea is retained in some but not all symbionts, suggesting ecological differences among host lineages. This report of tyrosine-provisioning symbionts in pollen-feeding insects expands our understanding of tyrosine supplementation as an important symbiont-provided benefit across a broad range of insects with diverse feeding ecologies.
DOI: 10.17617/3.a8djmk
title: Data for Three-Coordinate Nickel and Metal-Metal Interactions in a Heterometallic Iron-Sulfur Cluster

description: Experimental and computational data supporting the publication "Three-Coordinate Nickel and Metal-Metal Interactions in a Heterometallic Iron-Sulfur Cluster", published February 2024 in J. Am. Chem. Soc.: https://doi.org/10.1021/jacs.3c12157. 

Experimental data include Mössbauer, XAS, UVVIS, IR, EPR, NMR, and SQUID measurements.
Computational data include DFT results and input files for the ORCA program.
description: ORCA, 5.0.3
DOI: 10.17617/3.kneqir
title: Source Data for "Emergence of fractal geometries in the evolution of a metabolic enzyme"

description: Raw data for MP spectra and kinetic traces as well as phylogenetic trees, alignments, ancestral sequences and growth curves.
DOI: 10.17617/3.ozvhvp
title: DOMAssignR example data

description: Dissolved organic matter MS1 spectra recorded on an Orbitrap Elite instrument. Samples reflect soil seepage in a Beech forest in Germany.
DOI: 10.17617/3.pm8r94
title: MPI-10: Haptic-Auditory Measurements from Tool-Surface Interactions

description: This dataset consists of haptic-auditory recordings as a human explores 10 surfaces with 3 steel tools, including accelerations of the tool and finger, force and torque applied to the surface, and contact sounds.
description: Python, 3.10
DOI: 10.17617/3.4zb7zr
title: PINK: a tender X-ray beamline for X-ray emission spectroscopy

description: Data for the publication. Figures: 2-4, 6,7,10-14
DOI: 10.17617/3.vkwoi9
title: Supplementary Model Files for "Tasty Burgers, Soggy Fries: Probing Aspect Robustness in Aspect-Based Sentiment Analysis" (EMNLP 2020)

description: - Paper: "Tasty Burgers, Soggy Fries: Probing Aspect Robustness in Aspect-Based Sentiment
Analysis" (EMNLP 2020) by Xiaoyu Xing*, Zhijing Jin*, Di Jin, Bingning Wang, Qi Zhang, and
Xuanjing Huang.
&lt;br&gt;
- Paper link: https://arxiv.org/abs/2009.07964
&lt;br&gt;
- Abstract: Aspect-based sentiment analysis (ABSA) aims to predict the sentiment towards a specific aspect in the text. However, existing ABSA test sets cannot be used to probe whether a model can distinguish the sentiment of the target aspect from the non-target aspects. To solve this problem, we develop a simple but effective approach to enrich ABSA test sets. Specifically, we generate new examples to disentangle the confounding sentiments of the non-target aspects from the target aspect's sentiment. Based on the SemEval 2014 dataset, we construct the Aspect Robustness Test Set (ARTS) as a comprehensive probe of the aspect robustness of ABSA models. Over 92% data of ARTS show high fluency and desired sentiment on all aspects by human evaluation. Using ARTS, we analyze the robustness of nine ABSA models, and observe, surprisingly, that their accuracy drops by up to 69.73%. We explore several ways to improve aspect robustness, and find that adversarial training can improve models' performance on ARTS by up to 32.85%. Our code and new test set are available at https://github.com/zhijing-jin/ARTS_TestSet
DOI: 10.17617/3.o5xsi9
title: Data for „Detailed Mapping of the Complex Fiber Structure and White Matter Pathways of the Chimpanzee Brain“ (Nature Methods, https://www.nature.com/articles/s41592-024-02270-1)

description: The resource presented here includes (i) dMRI data at 500 µm isotropic resolution, (ii) MR-microscopy FLASH data at 150 µm isotropic resolution, (iii) anatomical FLASH data at 500 µm isotropic resolution, (iv) white matter fiber pathway reconstructions, (v) ultra-high-resolution TDI data, and (vi) segmentations of various anatomical brain structures.

Please cite the original publication in Nature Methods: https://www.nature.com/articles/s41592-024-02270-1
DOI: 10.17617/3.kjgezq
title: VRCC - No cardiac effects on threat perception in VR

description: The study investigates cardiac effects on threat perception. We provide ECG data (in various processing stages), behavioral data, motion tracking data.
DOI: 10.21233/hg5b-z177
title: Charco da Candieira pollen surface sample dataset

description: Raw data for the Charco da Candieira pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.5qkdmh
title: From breast cancer cell homing to the onset of early bone metastasis: the role of bone (re)modeling in early lesion formation

description: Breast cancer often metastasizes to bone causing osteolytic lesions. Structural and biophysical changes are rarely studied, yet are hypothesized to influence metastatic progression. Here, we developed a mouse model of early bone metastasis and multimodal 3D imaging to quantify cancer cell homing, dynamic bone (re)modeling and onset of bone metastasis. Using 3D light sheet fluorescence microscopy, we show eGFP+ cancer cells and small clusters in 3D (intact) bones. We detect early bone lesions using time-lapse in vivo microCT and reveal altered bone (re)modeling in absence of detectable lesions. With a new microCT image analysis tool, we detect and track the growth of early bone lesions over time. We show that cancer cells home in all bone compartments, while osteolytic lesions are only detected in the metaphysis, a region of high (re)modeling. Our study provides novel insights of dynamic bone (re)modeling as a driver during the early phase of metastasis.
DOI: 10.60893/figshare.jcp.28836758.v1
title: Supplement Number 2

description: CG potential table
DOI: 10.17617/3.nann0g
title: Staccioli Digital Archive metadata

description: This dataset contains the entire metadata export of the Staccioli Digital Archive, a contemporary art catalogue that documents the life and works of Italian contemporary sculptor Mauro Staccioli. It does not contain scanned images nor direct references thereto.

The dataset is available as Linked Open Data and formatted in RDF using CIDOC-CRM v7 as its schema. The data are aligned with the GND authority file, the ULAN and AAT thesauri, and Wikidata.

The catalogue and virtual exhibition are available at https://staccioli.biblhertz.it, whereas the live dataset can be queried and explored at http://data.biblhertz.it under the same terms as this data export.
description: MementoDB
description: SPARQL-Anything, 0.7.0
DOI: 10.60893/figshare.jcp.28836758
title: Supplement Number 2

description: CG potential table
DOI: 10.60893/figshare.jcp.28836761
title: Supplement Number 1

description: Supporting Information for "Temperature-Dependent local and global dynamics of Atactic Polystyrene: A Coarse-Grained molecular‐dynamics simulation study"
DOI: 10.17617/3.vkjbj0
title: Two paralogous PHD finger proteins participate in Paramecium tetraurelia’s natural genome editing

description: source data for "Two paralogous PHD finger proteins participate in Paramecium tetraurelia’s natural genome editing"
DOI: 10.60893/figshare.jcp.28836761.v1
title: Supplement Number 1

description: Supporting Information for "Temperature-Dependent local and global dynamics of Atactic Polystyrene: A Coarse-Grained molecular‐dynamics simulation study"
DOI: 10.48597/p6gx-79yz
title: Measurement of Ozone at Virolahti Harju

description: Measurement of Ozone at Virolahti Harju
DOI: 10.48597/z8xt-dnvu
title: Ozone at Virolahti Harju

description: Measurement of Ozone at Virolahti Harju
DOI: 10.48597/79h6-k28g
title: Pm25_mass at Virolahti Harju

description: Measurement of Pm25_mass at Virolahti Harju
DOI: 10.15468/dl.fsdj7f
title: Occurrence Download

description: A dataset containing 12405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Craterellus lutescens (Fr.) Fr.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry POLYGON ((-20 20, -20 75, 45 75, 45 20, -20 20))"
 ]
}

 The dataset includes 12405 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021493-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.p08ysz
title: Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus

description: Dataset for ring polymers under confinement as a model for chromatin in the cell nucleus
description: HOOMD-Blue / Signac framework
DOI: 10.17617/3.ejplue
title: Two distinct ferredoxins are essential for nitrogen fixation by the iron nitrogenase in Rhodobacter capsulatus

description: Nitrogenases are the only enzymes able to fix gaseous nitrogen into bioavailable ammonia and, hence, are essential for sustaining life. Catalysis by nitrogenases requires both a large amount of ATP and electrons donated by strongly reducing ferredoxins or flavodoxins. Our knowledge about the mechanisms of electron transfer to nitrogenase enzymes is limited: The electron transport to the iron (Fe)-nitrogenase has hardly been investigated. Here, we characterised the electron transfer pathway to the Fe-nitrogenase in Rhodobacter capsulatus via proteome analyses, genetic deletions, complementation studies and phylogenetics. Proteome analyses revealed an upregulation of four ferredoxins under nitrogen-fixing conditions reliant on the Fe-nitrogenase in a molybdenum nitrogenase knockout strain, compared to non-nitrogen-fixing conditions. Based on these findings, R. capsulatus strains with deletions of ferredoxin (fdx) and flavodoxin (fld, nifF) genes were constructed to investigate their roles in nitrogen fixation by the Fe-nitrogenase. R. capsulatus deletion strains were characterised by monitoring diazotrophic growth and Fe-nitrogenase activity in vivo. Only deletions of fdxC or fdxN resulted in slower growth and reduced Fe-nitrogenase activity, whereas the double-deletion of both fdxC and fdxN abolished diazotrophic growth. Differences in the proteomes of ∆fdxC and ∆fdxN strains, in conjunction with differing plasmid complementation behaviours of fdxC and fdxN, indicate that the two Fds likely possess different roles and functions. These findings will guide future engineering of the electron transport systems to nitrogenase enzymes, with the aim of increased electron flux and product formation.
DOI: 10.48597/a8gt-psxe
title: Measurement of VOC (OVOCs) at Lahemaa

description: Measurement of VOC (OVOCs) at Lahemaa
DOI: 10.48597/hh4m-2ums
title: Measurement of VOC (OVOCs) at Lahemaa

description: Measurement of VOC (OVOCs) at Lahemaa
DOI: 10.48597/kgjg-zt24
title: Measurement of VOC (OVOCs) at Lahemaa

description: Measurement of VOC (OVOCs) at Lahemaa
DOI: 10.48597/urnq-cv3g
title: Measurement of VOC (OVOCs) at Lahemaa

description: Measurement of VOC (OVOCs) at Lahemaa
DOI: 10.15468/dl.dhy322
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Viola vaginata Maxim.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 360 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021494-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.hfewvb
title: A supergene affects androgen concentrations during juvenile development in the ruff, a bird with alternative reproductive morphs

description: Sex steroids play a key role in mediating reproductive strategies within species. Their impact is most striking, and best studied, on mature phenotypes. However, genetic variation underlying endocrine pathways may have mechanistic consequences in early life. Here we examined the effects of supergene variants underlying alternative reproductive morphs in ruffs (Calidris pugnax) on sex steroid concentrations in juveniles and compared the differences with previous results in adults.
DOI: 10.17617/3.um0q7a
title: A new Zymomonas mobilis platform strain for the efficient production of chemicals

description: Online repository of DNA sequence files regarding a new chassis strain of Zymomonas mobilis.
DOI: 10.17617/3.ddzcwn
title: Data for "Medieval genomes from eastern Mongolia share a stable genetic profile over a millennium"

description: This collection includes the EIGENSTRAT format genotype data of 9 ancient individuals, from two archaeological sites in eastern Mongolia (Gurvan Dov and Tavan Khailaast) for the 1240K SNP panel. These individuals were newly analyzed in the study "Medieval genomes from eastern Mongolia share a stable genetic profile over a millennium".
DOI: 10.17617/3.g6sl3x
title: Macrocystis pyrifera genome and annotation

description: The dataset contains two files, the Macrocystis pyrifera genome and its annotation. The initial genome version was published by Lipinska et al., 2019. The version published here was modified on several SDR related contigs.

Assembly stats:
# number of contigs: 160,010
# total contigs length: 581,699,080
# mean contig size: 3,635.39
# contig size first quartile: 518
# median contig size: 911
# contig size third quartile: 2,588
# longest contig: 2,427,982
# shortest contig: 125
# contigs &gt; 500 nt: 123,054 (76.90 %)
# contigs &gt; 1K nt: 75,166 (46.98 %)
# contigs &gt; 10K nt: 14,565 (9.10 %)
# contigs &gt; 100K nt: 68 (0.04 %)
# contigs &gt; 1M nt: 2 (0.00 %)
# N50 14,255
# L50 9,866
# N80 3,114
# L80 35,566
DOI: 10.17617/3.4dbt3w
title: Data for "Amazonian Aerosol Size Distributions in a Lognormal Phase Space: Characteristics and Trajectories"

description: The dataset used in the study "Amazonian Aerosol Size Distributions in a Lognormal Phase Space: Characteristics and Trajectories". It contains data of the particle number size distribution from the ATTO SMPS at a 60-meter height from May 2021 to April 2022, the output of the mode fitting code, and the rain intensity for the wet and dry seasons.
DOI: 10.21233/9y22-7p16
title: Tahquamenon Bay testate amoebae surface sample dataset

description: Raw data for the Tahquamenon Bay testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15315618
title: q-ILT. Questionnaire on Interpreters use of Language Technology

description: Data collected as part of the CILT-project (Use and potential of language technologies in community interpreting.

16 participants attended 3 to 4 training sessions on the use of language technologies in community interpreting. Prior and after their attendance, participants filled out a pre- and post questionnaire.

The questionnaire includes the technology adoption propensity question in the version adapted for interpreters (Mellinger & Hanson, 2018), as well as some items developed by Elana Summers as part of her Ph.D-project (not published yet).



Mellinger, C. D., & Hanson, T. A. (2018). Interpreter traits and the relationship with technology and visibility. Translation and Interpreting Studies, 13(3), 366–392. https://doi.org/10.1075/tis.00021.mel
DOI: 10.5281/zenodo.15315619
title: q-ILT. Questionnaire on Interpreters use of Language Technology

description: Data collected as part of the CILT-project (Use and potential of language technologies in community interpreting.

16 participants attended 3 to 4 training sessions on the use of language technologies in community interpreting. Prior and after their attendance, participants filled out a pre- and post questionnaire.

The questionnaire includes the technology adoption propensity question in the version adapted for interpreters (Mellinger & Hanson, 2018), as well as some items developed by Elana Summers as part of her Ph.D-project (not published yet).



Mellinger, C. D., & Hanson, T. A. (2018). Interpreter traits and the relationship with technology and visibility. Translation and Interpreting Studies, 13(3), 366–392. https://doi.org/10.1075/tis.00021.mel
DOI: 10.60893/figshare.jcp.28811888
title: Supplementary Material

description: Additional computational information
DOI: 10.17617/3.npac3s
title: Bronze Age Northern Eurasian Genetics in the Context of Development of Metallurgy and Siberian Ancestry

description: This is momi2 code for demographic modeling in Bronze Age Northern Eurasian Genetics in the Context of Development of Metallurgy and Siberian Ancestry
DOI: 10.17617/3.u3nszt
title: Data and Code for The contribution of movement to social network structure and spreading dynamics under simple and complex transmission

description: These are the data and code to reproduce the simulations and figures from the manuscript "The contribution of movement to social network structure and spreading dynamics under simple and complex transmission" by Michael Chimento and Damien Farine. This is a simulation study where we test different combinations of transmission rules and movement rules on both dynamic and static networks. This includes the agent based models written in Python, the R code to produce all figures and tables, and the data used to generate the figures in the manuscript.
DOI: 10.17617/3.jecrgr
title: Valence-to-Core X-Ray Emission Spectroscopy of Transition Metal Tetrahalides: Mechanisms Governing Intensities

description: This dataset proviedes raw data associated with the corresponding publication. The raw data include the data for reproduction of all figures, xes raw data and input as well as xyz files needed for reproducing the calculations.
DOI: 10.17617/3.jrko9y
title: Hidden in plain sight: camouflage and hiding behaviour of wild precocial chicks in an open landscape

description: These are the data and R code to reproduce the results from the manuscript "Hidden in plain sight: camouflage and hiding behaviour of wild precocial chicks in an open landscape" by Tamara Volkmer, Krisztina Kupán, Veronika A. Rohr-Bender, Miguel Guirao-Ortiz, Medardo Cruz-López, Salvador Gómez del Angel, Lourenço Falcão Rodrigues, Luke Eberhart-Hertel, Clemens Küpper.
DOI: 10.48597/cqwa-qy3j
title: Inorganics in precipitation at Virolahti Harju

description: Measurement of Inorganics in precipitation at Virolahti Harju
DOI: 10.17617/3.9pgfhr
title: Integration of Transkribus:Bibliotheca Hertziana Digital Library

description: Presentation Poster for Transkribus User Conference 2024
description: Transkribus Platform
DOI: 10.48597/ez4f-k5k2
title: Sulphur_dioxide at Virolahti Harju

description: Measurement of Sulphur_dioxide at Virolahti Harju
DOI: 10.17617/3.hukms6
title: Code and Data for `A new approach to geostatistical synthesis of historical records reveals capuchin spatial responses to climate and demographic change`

description: Code and Data for Archives of Animal Movement: Reviving Historic Data to Safeguard Insights into Global and Demographic Change.
DOI: 10.17617/3.iqsptf
title: Source data for "Enzyme triggered assembly of glycan nanomaterials"

description: Raw data for NMR analysis, XRD, cryoTEM, and ED analysis
DOI: 10.17617/3.xowndx
title: ParA flipping

description: Matlab data files and scripts.
DOI: 10.17617/3.9a3bu8
title: Microclimate data measured 2020 - 2023 in the polytunnel screenhouse at the Max Planck Institute of Molecular Plant Physiology, Potsdam Golm, Germany

description: Microclimate data measured every minute between 20.06.2019 to 18.12.2023 in the polytunnel screenhouse at the Max Planck Institute of Molecular Plant Physiology, Potsdam Golm, Germany (52°23′55″ N, 13°3′56″ E). Description of sensors see https://doi.org/10.3389/fpls.2020.01071.
DOI: 10.17617/3.qzbm1x
title: Data for "Reconstructing the genetic relationship between ancient and present-day Siberian populations"

description: This collection includes the EIGENSTRAT format genotype data of 205 ancient individuals for the 1240K SNP panel. The individuals were previously published elsewhere but only FASTQ or BAMs were made publicly available by the original studies. We deposit the 1240K genotype call of these individuals which we used in our study titled "Reconstructing the genetic relationship between ancient and present-day Siberian populations".
DOI: 10.17617/3.xmqbqh
title: Data and code for "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"

description: Data (.csv)and Models (.R) for the paper "Captivity alters behavior but not seasonal brain size change in semi–naturally housed shrews"
DOI: 10.15468/dl.z25hba
title: Occurrence Download

description: A dataset containing 12340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lactarius deliciosus (L.) Gray)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry POLYGON ((-20 20, -20 75, 45 75, 45 20, -20 20))"
 ]
}

 The dataset includes 12340 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021492-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.2vueus
title: ProciGen dataset for "Template Free Reconstruction of Human-object Interaction with Procedural Interaction Generation" (CVPR'24)

description: A large scale synthetic dataset about human-object interaction. It features about 1M+ interaction images with 21k+ different objects. The generation of this dataset is described in the paper "Template Free Reconstruction of Human-object Interaction with Procedural Interaction Generation" (CVPR'24).


&lt;p&gt;
Please check the github repo for detailed file structure of the dataset: https://github.com/xiexh20/ProciGen 
&lt;/p&gt;


If you use our data, please cite: 
&lt;p&gt;
@inproceedings{xie2023template_free,
 title = {Template Free Reconstruction of Human-object Interaction with Procedural Interaction Generation},
 author = {Xie, Xianghui and Bhatnagar, Bharat Lal and Lenssen, Jan Eric and Pons-Moll, Gerard},
 booktitle = {IEEE Conference on Computer Vision and Pattern Recognition (CVPR)},
 month = {June},
 year = {2024},
}
&lt;/p&gt;