cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6743714
title: Excitation energy transfer and vibronic coherence in intact phycobilisomes — multidimensional electronic spectroscopy data set and MATLAB and Julia analysis code

description: Data sets used in the article "Excitation energy transfer and vibronic coherence in intact phycobilisomes" by Sil et al. The phycobilisomes were isolated from the short-filament mutant (SF33) of <em>Fremyella diplosiphon</em> UTEX 481 (also known as <em>Tolypothrix</em> sp. PCC 7601). Multidimensional electronic spectroscopy was performed with 6.7 fs mid-visible pulses (520–700 nm) using a pump–probe optical configuration using adaptive pulse shaping techniques. In addition to the full set of two-dimensional spectra and analysis files generated using global and target modeling and analysis of coherences (3DES oscillation maps), we provide here a linear absorption spectrum with phycobiliprotein component analysis as well as a set of 2D excitation–emission fluorescence spectra of intact and broken phycobilisome preparations. Sil, S.; Tilluck, R. W.; Mohan TM, N.; Leslie, C. H.; Rose, J. B.; Domínguez-Martín, M. A.; Lou, W.; Kerfeld, C. A.; Beck, W. F. Excitation energy transfer and vibronic coherence in intact phycobilisomes. Nat. Chem. (2022), DOI: 10.1038/s41557-022-01026-8. https://www.nature.com/articles/s41557-022-01026-8
description: Work in the laboratory of W.F.B. was principally supported by grant award DE-SC0010847 from the Photosynthetic Systems program of the Office of Basic Energy Sciences, U.S. Department of Energy. Work in the laboratory of C.A.K. was supported by grant award DE-SC0020606 from the Photosynthetic Systems program of the Office of Basic Energy Sciences, U.S. Department of Energy. Additionally, we would like to thank Damien Sheppard, Dr. Sigal Lechno-Yossef, and Dr. Han Bao in the Kerfeld laboratory for their assistance with the cyanobacterial cultures and with the isolation of the phycobilisome samples.
DOI: 10.6084/m9.figshare.20541816
title: Anticyclone tracks from ERA5, CMIP5, and Australian RCMs

description: This folder contains anticyclone tracks generated for Pepler (2022) These anticyclones were identified using the Murray and Simmonds (1991) and Simmonds et al. (1999) cyclone tracking scheme, and tracked on 6 hourly MSLP regridded to a constant polar stereographic grid with an approximate resolution of 1.5 degrees at 30S. The source code and documntation is available at https://cyclonetracker.earthsci.unimelb.edu.au/ <br> Tracks are provided for ERA5 during 1979-2021 and for 10 CMIP5 models globally and 12 RCMs for the Australian region (based on CCAM, WRF/NARCliM, and BARPA) from historical simulations for 1979-2005, and rcp85 for 2006-2009 and 2070-2099 <br> For more details on the parameters used for detection and tracking see the files *incycloc and *intrack which are used as inputs for the tracking scheme. <br> A separate track file is provided for each year, beginning on 1 December of the previous year, to allow for the identification of cross-year tracks when relevant. Column headings: ID Track ID Fix Instance within track Date Date* (UTC) Time Time (UTC) Open/closed Is there closed circulation (0) or an "open" ridge. Not used. Lon Longitude Lat Latitude MSLP Central pressure (hPa) Laplacian Laplacian of MSLP (hPa. Deg.lat^2), which represents the curvature of the MSLP. This is a better indicator of the strength of a system Depth Depth of anticyclone (hPa) Radius Radius of anticyclone (degrees) Up Steering velocity (U) Vp Steering velocity (V) *Dates are two digit years, and in some cases are wrong because of the way the tracking scheme works (e.g. 1999-2001). <br> References: Murray, R. J., and I. Simmonds, 1991: A numerical scheme for tracking cyclone centres from digital data. Part I: Development and operation of the scheme. Aust. Meteorol. Mag., 39, 155166. Simmonds, I., R. J. Murray, and R. M. Leighton, 1999: A refinement of cyclone tracking methods with data from FROST. Aust. Meteorol. Mag., (special edition), 3549. Pepler (2022). Projections of synoptic anticyclones for the 21st century. In prep <br> <br>
DOI: 10.6084/m9.figshare.19948007.v4
title: A database for human well-being and ecological performance under planetary pressure of the Belt and Road from 1990 to 2018.

description: · Consumption dataset, including EF per capita, the Normalization of EF of 61 B&R countries, B&R regions average and global average from 1990-2018. · Pressure dataset, including CDE per capita and its index, MF per capita and its index, <em>A</em>, and <em>P</em> of 61 B&R countries, B&R regions average and global average from 1990-2019. · Output dataset, including HDI and PHDI of 61 B&R countries, B&R regions average and global average from 1990-2019. · Efficiency dataset, including AEWP of 61 B&R countries, B&R regions average and global average from 1990-2018. · Other dataset, including BC per capita, ES/ED per capita, and population of 61 B&R countries, B&R regions and globally from 1990-2019.
DOI: 10.5439/1573770
title: 915-MHz Radar Wind Profiler: vertical moments data; low power mode

description: 915-MHz Radar Wind Profiler: vertical moments data; low power mode
DOI: 10.6084/m9.figshare.19388759
title: Use of a multiscalar GRACE-based standardized terrestrial water storage index for assessing global hydrological droughts

description: A multiscalar standardized terrestrial water storage index (STI) is proposed to assess global hydrological droughts in this study. STI is defined as the standardized statistical deviation of terrestrial water storage (TWS) measured by CSR GRACE to the climatology at multiple time scales. STI follows the definition of water deficit in multiscale standardized drought indices such as SPI and SPEI, and the accumulative TWS is ftted by the cumulative normal distribution in the calculation procedure.
DOI: 10.6084/m9.figshare.19388759.v4
title: Use of a multiscalar GRACE-based standardized terrestrial water storage index for assessing global hydrological droughts

description: A multiscalar standardized terrestrial water storage index (STI) is proposed to assess global hydrological droughts in this study. STI is defined as the standardized statistical deviation of terrestrial water storage (TWS) measured by CSR GRACE to the climatology at multiple time scales. STI follows the definition of water deficit in multiscale standardized drought indices such as SPI and SPEI, and the accumulative TWS is ftted by the cumulative normal distribution in the calculation procedure.
DOI: 10.6084/m9.figshare.19388759.v3
title: Use of a multiscalar GRACE-based standardized terrestrial water storage index for assessing global hydrological droughts

description: A multiscalar standardized terrestrial water storage index (STI) is proposed to assess global hydrological droughts in this study. STI is defined as the standardized statistical deviation of terrestrial water storage (TWS) measured by CSR GRACE to the climatology at multiple time scales. STI follows the definition of water deficit in multiscale standardized drought indices such as SPI and SPEI, and the accumulative TWS is ftted by the cumulative normal distribution in the calculation procedure.
DOI: 10.5281/zenodo.5587449
title: Cascading rupture process of the 2021 Maduo, China earthquake revealed by the joint inversion of seismic and geodetic data

description: The coseismic Sentinel-1 line-of-sight (LOS) displacements, strong-motion and teleseismic waveforms used in the joint inversion of the source rupture process for the 2021 Maduo, China earthquake are included in this repository.
DOI: 10.5281/zenodo.5587450
title: Cascading rupture process of the 2021 Maduo, China earthquake revealed by the joint inversion of seismic and geodetic data

description: The coseismic Sentinel-1 line-of-sight (LOS) displacements, strong-motion and teleseismic waveforms used in the joint inversion of the source rupture process for the 2021 Maduo, China earthquake are included in this repository.
DOI: 10.15472/uxlsgz
title: Rasgos funcionales de especies de la vegetación espontánea presente en seis microhábitats asociados a una Alameda en el occidente de la ciudad de Bogotá

description: La información relacionada está enmarcada en el contrato de prestación de servicios número JBB-CTO-057-2021, la cual se realiza con el propósito de identificar la flora espontánea presente y/o asociada a diferentes microhábitats ubicados sobre una Alameda en las localidades de Bosa y Kennedy a través de muestreos de observación, donde se logró identificar un total de 93 especies y 5 géneros vegetales. Los resultados se describen en el documento técnico final denominado "¿Homogenización biótica de la flora urbana?: explorando su diversidad taxonómica y funcional en Bogotá y sus implicaciones para la conectividad ecológica en el territorio. Caso de estudio: especies de plantas asociadas a las palmas del género Phoenix l. (Arecaceae) en una alameda que conecta seis corredores de ronda urbanos de la estructura ecológica principal en las localidades de Kennedy y Bosa (Bogotá D.D.)". Este recurso contiene la información de algunos rasgos funcionales derivadas de la búsqueda de literatura científica para las especies encontradas durante la investigación.
DOI: 10.3886/e112374v1-126920
title: Replication data for: The Gender Wage Gap and Domestic Violence

description: Three quarters of all violence against women is perpetrated by domestic partners. This study exploits exogenous changes in the demand for labor in female-dominated industries to estimate the impact of the male-female wage gap on domestic violence. Decreases in the wage gap reduce violence against women, consistent with a household bargaining model. These findings shed new light on the health production process as well as observed income gradients in health and suggest that in addition to addressing concerns of equity and efficiency, pay parity can also improve the health of American women via reductions in violence. (JEL D13, I12, J16, J23, J31)
DOI: 10.5281/zenodo.6375556
title: Case list for the paper "Ionospheric Oxygen Outflows Directly Injected into the Inner Magnetosphere: Van Allen Probes Statistics"

description: This is the case list for the statistics presented in paper titled "Ionospheric Oxygen Outflows Directly Injected into the Inner Magnetosphere: Van Allen Probes Statistics"
DOI: 10.5281/zenodo.6375557
title: Case list for the paper "Ionospheric Oxygen Outflows Directly Injected into the Inner Magnetosphere: Van Allen Probes Statistics"

description: This is the case list for the statistics presented in paper titled "Ionospheric Oxygen Outflows Directly Injected into the Inner Magnetosphere: Van Allen Probes Statistics"
DOI: 10.5281/zenodo.7073196
title: Case list for the paper "Ionospheric Oxygen Outflows Directly Injected into the Inner Magnetosphere: Van Allen Probes Statistics"

description: This is the case list for the statistics presented in paper titled "Ionospheric Oxygen Outflows Directly Injected into the Inner Magnetosphere: Van Allen Probes Statistics"
DOI: 10.6084/m9.figshare.20417445
title: Transcriptomic heterochrony and completely cleistogamous flower development in the mycoheterotrophic orchid Gastrodia

description: <strong>Dataset on "Transcriptomic heterochrony and completely cleistogamous flower development in the mycoheterotrophic orchid </strong><em><strong>Gastrodia"</strong></em>
DOI: 10.5281/zenodo.7073200
title: Xiaomi8_data_Tianjin

description: The data was acquired on July 4, 2022 (DOY 185 02:45-03:20 GPST) for about 35 minutes at the sea lake nearby the Taku Forts in Tianjin, including 30 minutes of driving on the lake (in the dynamic environment) and 5 minutes of docking on the shore (in the quasi-static environment). The experiment devices include a Xiaomi MI8 smartphone, an INS-D integrated navigation system and a Trimble GNSS antenna.
DOI: 10.5281/zenodo.7073199
title: Xiaomi8_data_Tianjin

description: The data was acquired on July 4, 2022 (DOY 185 02:45-03:20 GPST) for about 35 minutes at the sea lake nearby the Taku Forts in Tianjin, including 30 minutes of driving on the lake (in the dynamic environment) and 5 minutes of docking on the shore (in the quasi-static environment). The experiment devices include a Xiaomi MI8 smartphone, an INS-D integrated navigation system and a Trimble GNSS antenna.
DOI: 10.5281/zenodo.7048910
title: BCL6 deletion in CD4 T cells reveals Th2 eff mediated immunity in the skin

description: RNA-Seq datasets related to the study of Mouse Tfh cells. Recent studies propose that Group 2 T follicular helper (Tfh) cells have a higher degree of functional plasticity in addition to their well-defined roles in mediating IL-4-dependent switching of germinal centre B cells to the production of IgG1 and IgE antibodies. In particular Tfh cells have been proposed to be an essential stage in Th2 effector cell development that are able to contribute to innate Type 2 responses. We used CD4-cre targeted deletion of BCL6 to identify the contribution Tfh cells make to tissue Th2 effector responses in models of skin atopic disease and lung immunity to parasites. Ablation of Tfh cells did not impair the development or recruitment of Th2 effector subsets to the skin and did not alter the transcriptional expression profile or functional activities of the resulting tissue resident Th2 effector cells. However, the accumulation of Th2 effector cells in lung Th2 responses was partially affected by BCL6 deficiency. These data indicate that the development of Th2 effector cells does not require a BCL6 dependent step implying Tfh and Th2 effector populations follow separate developmental trajectories and Tfh cells do not contribute to Type 2 responses in the skin . This study reveals important findings that add to the growing literature around the plasticity and functional interconversion of T helper subsets.
description: This Zenodo contains raw data, used for RNA-Seq analysis as fastq files. It also contains trimmed, mapped, and counted raw count expresion tables. The normalised counts are also available with their associated log2 fold change expression and adjusted p-value tables from using DESeq2. VSTpk (Variance Stabilised Transcripts Per Kilobase) counts are also made available that we found valuable for heatmaps, and other visualisations.
DOI: 10.5281/zenodo.7048909
title: BCL6 deletion in CD4 T cells reveals Th2 eff mediated immunity in the skin

description: RNA-Seq datasets related to the study of Mouse Tfh cells. Recent studies propose that Group 2 T follicular helper (Tfh) cells have a higher degree of functional plasticity in addition to their well-defined roles in mediating IL-4-dependent switching of germinal centre B cells to the production of IgG1 and IgE antibodies. In particular Tfh cells have been proposed to be an essential stage in Th2 effector cell development that are able to contribute to innate Type 2 responses. We used CD4-cre targeted deletion of BCL6 to identify the contribution Tfh cells make to tissue Th2 effector responses in models of skin atopic disease and lung immunity to parasites. Ablation of Tfh cells did not impair the development or recruitment of Th2 effector subsets to the skin and did not alter the transcriptional expression profile or functional activities of the resulting tissue resident Th2 effector cells. However, the accumulation of Th2 effector cells in lung Th2 responses was partially affected by BCL6 deficiency. These data indicate that the development of Th2 effector cells does not require a BCL6 dependent step implying Tfh and Th2 effector populations follow separate developmental trajectories and Tfh cells do not contribute to Type 2 responses in the skin . This study reveals important findings that add to the growing literature around the plasticity and functional interconversion of T helper subsets.
description: This Zenodo contains raw data, used for RNA-Seq analysis as fastq files. It also contains trimmed, mapped, and counted raw count expresion tables. The normalised counts are also available with their associated log2 fold change expression and adjusted p-value tables from using DESeq2. VSTpk (Variance Stabilised Transcripts Per Kilobase) counts are also made available that we found valuable for heatmaps, and other visualisations.
DOI: 10.5281/zenodo.5987626
title: Data accompanying the GitHub repository bartonlab/paper-covariance-estimation

description: This dataset contains data from simulations and analysis of Wright-Fisher evolution that accompany the GitHub repository bartonlab/paper-covariance-estimation. The GitHub repository contains code and data for reproducing results described in the manuscript "Estimating genetic linkage and selection from allele frequency trajectories." See the GitHub repository for details on the interpretation and analysis of this data.
DOI: 10.5281/zenodo.6410266
title: Data accompanying the GitHub repository bartonlab/paper-covariance-estimation

description: This dataset contains data from simulations and analysis of Wright-Fisher evolution that accompany the GitHub repository bartonlab/paper-covariance-estimation. The GitHub repository contains code and data for reproducing results described in the manuscript "Estimating genetic linkage and selection from allele frequency trajectories." See the GitHub repository for details on the interpretation and analysis of this data.
DOI: 10.5281/zenodo.7072019
title: Data accompanying the GitHub repository bartonlab/paper-covariance-estimation

description: This dataset contains data from simulations and analysis of Wright-Fisher evolution that accompany the GitHub repository bartonlab/paper-covariance-estimation. The GitHub repository contains code and data for reproducing results described in the manuscript "Estimating genetic linkage and selection from allele frequency trajectories." See the GitHub repository for details on the interpretation and analysis of this data.
DOI: 10.5281/zenodo.5987625
title: Data accompanying the GitHub repository bartonlab/paper-covariance-estimation

description: This dataset contains data from simulations and analysis of Wright-Fisher evolution that accompany the GitHub repository bartonlab/paper-covariance-estimation. The GitHub repository contains code and data for reproducing results described in the manuscript "Estimating genetic linkage and selection from allele frequency trajectories." See the GitHub repository for details on the interpretation and analysis of this data.
DOI: 10.6084/m9.figshare.21085231
title: R scripts + csv tables

description: Learning and memory have been intensively investigated in social bees. In contrast, the cognitive capacities of wasps remain largely unexplored despite their key role as pollinators and predators of insect pests. We focused on the neotropical primitively eusocial wasp <em>Mischocyttarus</em> <em>cerberus</em> and studied the capacities of different castes to learn and memorize associations between odorants and sucrose reward. We developed a Pavlovian conditioning protocol in which harnessed wasps respond with appetitive conditioned movements of their mouthparts to a learned odorant and determined if different castes, sexes and ages differ in their learning and retention capacities. We show that <em>M</em>. <em>cerberus</em> learns and memorizes efficiently the odor-sugar associations. Yet, newly emerged females, but not males, were unable to learn odorants, thus showing a sex and age specific effect on learning related to a different lifestyle. We highlight the remarkable cognitive abilities of wasps and define future goals for their cognitive characterization.
DOI: 10.6084/m9.figshare.21085231.v1
title: R scripts + csv tables

description: Learning and memory have been intensively investigated in social bees. In contrast, the cognitive capacities of wasps remain largely unexplored despite their key role as pollinators and predators of insect pests. We focused on the neotropical primitively eusocial wasp <em>Mischocyttarus</em> <em>cerberus</em> and studied the capacities of different castes to learn and memorize associations between odorants and sucrose reward. We developed a Pavlovian conditioning protocol in which harnessed wasps respond with appetitive conditioned movements of their mouthparts to a learned odorant and determined if different castes, sexes and ages differ in their learning and retention capacities. We show that <em>M</em>. <em>cerberus</em> learns and memorizes efficiently the odor-sugar associations. Yet, newly emerged females, but not males, were unable to learn odorants, thus showing a sex and age specific effect on learning related to a different lifestyle. We highlight the remarkable cognitive abilities of wasps and define future goals for their cognitive characterization.
DOI: 10.25921/kaqh-3w88
title: ES60 Water Column Sonar Data Collected During GOA13SS
DOI: 10.5281/zenodo.6592058
title: Composite geostationary weather satellite images (second time derivative of water vapor channel) for visualizing Lamb waves

description: Second time derivative of water vapor channel (6.2 micrometer) brightness temperature from geostationary weather satellites (Units: K s<sup>-2</sup>) Himawari-8 (original data obtained from NICT Science Cloud) GOES-16/17 (original data obtained from Amazon AWS) Meteosat-8/9/10/11 (original data obtained from EUMETSAT) Time interval of the files: 5 minutes Time interval of each satellite, dt for time derivative: Himaawri-8, GOES-16/17: 10 minutes, 10 minutes Meteosat-8/9/11: 15 minutes, 15 minutes Meteosat-10: 5 minutes, 10 minutes Each file contains the latest images from those satellites at that time. The time stamp for each satellite represents the beginning of each full-disk scan. Bias correction: Himawari-8: bias removal for each swath GOES-16/17, Meteosat-11: bias removal for each east-west line Meteosat-8/9/10: bias removal for each east-west line (note: satellite attitude was not stable) Smoothing: Band-pass filter for each full-disk image separately: 2-40 degrees on lat-lon coordinate Stronger smoothing at latitudes higher than 60 degrees north/south Down-sampling: Full-disk images were mapped to a 0.04-degree lat-lon coordinate. Then, composite images were produced at the 0.2-degree resolution. Version 2: Improved interpolation algorithm Himawari-8: improved geolocation Meteosat-8/9: improved treatment of noise near the edge of full disk images
description: {"references": ["Otsuka, S., 2022: Visualizing Lamb waves from a volcanic eruption using meteorological satellite Himawari-8. Geophys. Res. Lett., 49, e2022GL098324."]}
DOI: 10.5281/zenodo.6592059
title: Composite geostationary weather satellite images (second time derivative of water vapor channel) for visualizing Lamb waves

description: Second time derivative of water vapor channel (6.2 micrometer) brightness temperature from geostationary weather satellites (Units: K s<sup>-2</sup>) Himawari-8 (original data obtained from NICT Science Cloud) GOES-16/17 (original data obtained from Amazon AWS) Meteosat-8/9/10/11 (original data obtained from EUMETSAT) Time interval of the files: 5 minutes Time interval of each satellite, dt for time derivative: Himaawri-8, GOES-16/17: 10 minutes, 10 minutes Meteosat-8/9/11: 15 minutes, 15 minutes Meteosat-10: 5 minutes, 10 minutes Each file contains the latest images from those satellites at that time. The time stamp for each satellite represents the beginning of each full-disk scan. Bias correction: Himawari-8: bias removal for each swath GOES-16/17, Meteosat-11: bias removal for each east-west line Meteosat-8/9/10: bias removal for each east-west line (note: satellite attitude was not stable) Smoothing: Band-pass filter for each full-disk image separately: 2-40 degrees on lat-lon coordinate Stronger smoothing at latitudes higher than 60 degrees north/south Down-sampling: Full-disk images were mapped to a 0.04-degree lat-lon coordinate. Then, composite images were produced at the 0.2-degree resolution.
description: {"references": ["Otsuka, S., 2022: Visualizing Lamb waves from a volcanic eruption using meteorological satellite Himawari-8. Geophys. Res. Lett., 49, e2022GL098324."]}