cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/9e59a43d-474b-46c2-9e29-c7c0b21bd6b4
title: Data underlying the Bachelor Thesis: Using Newsletters to Analyze Curated Software Testing Content

description: The objective of this research was to analyze curated content published via newsletters and find out what software testing knowledge was present in those resources. Software Testing newsletters were analyzed in this research and the AtlasTI software was used with a grounded theory approach to tag the resources mentioned in these newsletters. The resources were obtained by visiting multiple curated software testing-related newsletters and downloading articles as PDFs. After downloading, open/axial coding was used to code each file based on various different categories. The attached excel files provide a detailed view of what common software testing technologies, techniques, problems, and more are mentioned in newsletter resources. This data set is linked to a bachelor thesis completed at the EEMCS faculty at the TU Delft. A link will be added after publication.
DOI: 10.4121/9e59a43d-474b-46c2-9e29-c7c0b21bd6b4.v1
title: Data underlying the Bachelor Thesis: Using Newsletters to Analyze Curated Software Testing Content

description: The objective of this research was to analyze curated content published via newsletters and find out what software testing knowledge was present in those resources. Software Testing newsletters were analyzed in this research and the AtlasTI software was used with a grounded theory approach to tag the resources mentioned in these newsletters. The resources were obtained by visiting multiple curated software testing-related newsletters and downloading articles as PDFs. After downloading, open/axial coding was used to code each file based on various different categories. The attached excel files provide a detailed view of what common software testing technologies, techniques, problems, and more are mentioned in newsletter resources. This data set is linked to a bachelor thesis completed at the EEMCS faculty at the TU Delft. A link will be added after publication.
DOI: 10.6084/m9.figshare.23057774.v1
title: Analysis

description: A summary of all flow cytometry results, scatter plots and applied gates
DOI: 10.6084/m9.figshare.23282948
title: Data for manuscript entitled "<strong>Nicotinamide riboside, pterostilbene and ibudilast protect motor neurons and extend survival in ALS mice</strong>" by Rafael Lopez-Blanch et al.

description: Data points for Figs and Tables plus uncropped western blots <br>
DOI: 10.6084/m9.figshare.21632003
title: In-situ DOC measurements

description: In-situ DOC observations from different rivers in China, covering the period 1993-2019, were collected and harmonized from previous literature. More details of this database can be found here: https://onlinelibrary.wiley.com/doi/10.1111/gcb.16819.
DOI: 10.25934/pr00009020
title: Data challenge: respiratory tract infections; is it true resistance or does penicillin work " (AMR ID: 00009005)

description: Respiratory tract infections are one of the highest drivers of antibiotic use in the current healthcare system. These are common infections among children and adults. They do present as mild and severe infections; clinicians have a predisposition of prescribing antibiotics for these while the leading cause of these RTIs is viral. The symptoms usually are the same for bacterial and viral RTIs but there is limited diagnostic capability to distinguish the two; full hemogram is a possible laboratory test but there is reluctance to go through the whole process. Thus AMR results from increased consumption of antimicrobial drugs, improper prescribing of antimicrobial therapy due to their wide therapeutic index and initial prescription of a broad-spectrum drug that is unnecessary. These infections are present in outpatient and inpatient settings thus all problems associated with antibiotic prescriptions become escalated in the inpatient set ups since even viral RTIs in wards will be treated by the “big antibiotics” propagating the AMR epidemic. This goes on until there is no response to treatment with antibiotics. Then culture and sensitivity tests are ordered to show there was no bacterial pathogen. The fevers persist and bigger antibiotics are ordered, there is prolonged hospital stay and eventually patient gets better. The questions would be then; was there a bacterial cause initially? Was it there and was it treated or healing was natural? For those treated with several antibiotics was it true resistance or secondary infection?
This study aims to answer these questions and also look at factors that determine resistance and develop a model, using regression techniques, that would predict future resistance patterns as well as moderating these factors to counter AMR. Use of high doses of some antibiotics is recommended for managing RTIs, would this be a solution for all the antibiotics used for RTI management?
DOI: 10.6084/m9.figshare.23540685
title: KEGG_endrichment_Fg_vs_Tween

description: KEGG pathways associated with<em> Fusarium graminearum</em> regulated transcripts in the <em>TaNACL-D1</em> overexpressing and the wild type cv. Fielder.
DOI: 10.6084/m9.figshare.23540685.v2
title: KEGG_endrichment_Fg_vs_Tween

description: KEGG pathways associated with<em> Fusarium graminearum</em> regulated transcripts in the <em>TaNACL-D1</em> overexpressing and the wild type cv. Fielder.
DOI: 10.6084/m9.figshare.23540685.v1
title: KEGG_endrichment_Fg_vs_Tween

description: KEGG pathways associated with<em> Fusarium graminearum</em> regulated transcripts in the <em>TaNACL-D1</em> overexpressing and the wild type cv. Fielder.
DOI: 10.6084/m9.figshare.23540676
title: GO_enrichment_Fg_vs_Tween

description: Gene Onotology (GO) terms associated with <em>Fusarium graminearum</em> regulated transcripts in the T<em>aNACL-D1</em> overexpressing and the wild type cv. Fielder.
DOI: 10.6084/m9.figshare.23540676.v2
title: GO_enrichment_Fg_vs_Tween

description: Gene Onotology (GO) terms associated with <em>Fusarium graminearum</em> regulated transcripts in the T<em>aNACL-D1</em> overexpressing and the wild type cv. Fielder.
DOI: 10.6084/m9.figshare.23540676.v1
title: GO_enrichment_Fg_vs_Tween

description: Gene Onotology (GO) terms associated with <em>Fusarium graminearum</em> regulated transcripts in the T<em>aNACL-D1</em> overexpressing and the wild type cv. Fielder.
DOI: 10.6084/m9.figshare.23540424
title: Differentially_expressed_transcripts_Deseq2_output

description: The output from the DeSeq2 differential expression analysis for each treatment (<em>Fusarium graminearum</em>, Tween 20, no treatment) x genotype (<em>TaNACL-D1</em> overexpressing and wild type cv. Fielder) combination; a description of the corresponding gene based on a top BLAST hit; GO, enzyme and InterPro annotations for the corresponding gene.
DOI: 10.6084/m9.figshare.23540424.v1
title: Differentially_expressed_transcripts_Deseq2_output

description: The output from the DeSeq2 differential expression analysis for each treatment (<em>Fusarium graminearum</em>, Tween 20, no treatment) x genotype (<em>TaNACL-D1</em> overexpressing and wild type cv. Fielder) combination; a description of the corresponding gene based on a top BLAST hit; GO, enzyme and InterPro annotations for the corresponding gene.
DOI: 10.6084/m9.figshare.23540424.v2
title: Differentially_expressed_transcripts_Deseq2_output

description: The output from the DeSeq2 differential expression analysis for each treatment (<em>Fusarium graminearum</em>, Tween 20, no treatment) x genotype (<em>TaNACL-D1</em> overexpressing and wild type cv. Fielder) combination; a description of the corresponding gene based on a top BLAST hit; GO, enzyme and InterPro annotations for the corresponding gene.
DOI: 10.34740/kaggle/dsv/5986278
title: Spatiotemporal Wildlife Dataset
DOI: 10.4121/5a1d40d9-9100-478e-8743-87e949c78671
title: Replication Dataset: Analyzing natural bed-level dynamics to mitigate the morphological impact of river interventions

description: The river bed level in low-land rivers like the Rhine branches in the Netherlands changes continuously on various spatial and temporal scales. We use biweekly (2005-2020) multibeam bed-level measurements of the river Bovenrijn/Waal to study the morphological changes on multiple scales using a wavelet transform. The dataset contains the unfiltered and the filtered results that were presented in the article. The data is aggregated in the interactive atlas to show the bed-level changes in time and as function of the discharge.<br>
DOI: 10.4121/5a1d40d9-9100-478e-8743-87e949c78671.v1
title: Replication Dataset: Analyzing natural bed-level dynamics to mitigate the morphological impact of river interventions

description: The river bed level in low-land rivers like the Rhine branches in the Netherlands changes continuously on various spatial and temporal scales. We use biweekly (2005-2020) multibeam bed-level measurements of the river Bovenrijn/Waal to study the morphological changes on multiple scales using a wavelet transform. The dataset contains the unfiltered and the filtered results that were presented in the article. The data is aggregated in the interactive atlas to show the bed-level changes in time and as function of the discharge.<br>
DOI: 10.6084/m9.figshare.23551869
title: Bone Mineral Data

description: This data has been used and/or analyzed during the current study (without any identifying information) in the study entitled:" <strong>The Effect of Intradialytic Exercise on Calcium, Phosphorus and Parathyroid Hormone: A Randomized Controlled Trial"</strong>
DOI: 10.6084/m9.figshare.23551869.v1
title: Bone Mineral Data

description: This data has been used and/or analyzed during the current study (without any identifying information) in the study entitled:" <strong>The Effect of Intradialytic Exercise on Calcium, Phosphorus and Parathyroid Hormone: A Randomized Controlled Trial"</strong>
DOI: 10.25919/t1n3-4w28
title: Parkes observations for project P1180 semester 2023APRS_01

description: We propose to carry out broadband follow-up observations of two new pulsars discovered in the ongoing SMART pulsar survey. PSR J1357-2530 is actually a re-discovery, but was originally reported in the literature with an incorrect name and discrepant dispersion measure, and no accurate position or timing solution available. PSR J0452-3418 is a new discovery from the SMART survey, with a spin period of 1.665 s and dispersion measure of $19.6\,pc\,cm^{-3}$. PSR J1357-2530 likely belongs to the rare class of low-luminosity, steep-spectrum pulsars; a class of pulsars that make up ~2% of the currently-known population of long-period pulsars. As such, understanding their emission and spectral properties is vital for developing a more comprehensive picture of the Galactic population of pulsars, and to make meaningful forecasts for the detectable population of pulsars in future low-frequency surveys, including those planned with SKA-Low. Follow-up of both pulsars is under way, using MWA archival data and targeted observations with the uGMRT (300-750 MHz). Parkes (Murriyang) observations will enable us to extend the frequency coverage to GHz frequencies, allowing us to investigate their pulse profile structure and single-pulse phenomenology in detail, including their frequency dependence.
DOI: 10.6084/m9.figshare.23261057
title: Calibration

description: Calibration of the flow rate, fluorescence, and light scattering intensity
DOI: 10.6084/m9.figshare.23261057.v1
title: Calibration

description: Calibration of the flow rate, fluorescence, and light scattering intensity
DOI: 10.34740/kaggle/dsv/5986371
title: Spatiotemporal Wildlife Dataset
DOI: 10.5281/zenodo.8063219
title: Models and data in support of "EMFEM: a parallel 3D modeling code for frequency-domain electromagnetic method using goal-oriented adaptive finite element method"

description: These directories contain the model and data files for "EMFEM: a parallel 3D modeling code for frequency-domain electromagnetic method using goal-oriented adaptive finite element method".<br>
DOI: 10.5281/zenodo.8063218
title: Models and data in support of "EMFEM: a parallel 3D modeling code for frequency-domain electromagnetic method using goal-oriented adaptive finite element method"

description: These directories contain the model and data files for "EMFEM: a parallel 3D modeling code for frequency-domain electromagnetic method using goal-oriented adaptive finite element method".<br>
DOI: 10.6084/m9.figshare.22300378
title: Exome sequencing in paediatric NDDs: Supplementary Files for in silico functional analysis

description: The detailed outputs from the STRING Interaction Network and PANTHER<sup>TM</sup> Classification system (Functional analysis and Overrepresentation analysis) for interaction networks with candidate genes <em>GRIN3B </em>and <em>ASAP1.</em>
DOI: 10.6084/m9.figshare.22300378.v1
title: Exome sequencing in paediatic NDDs: Supplementary Files for in silico functional analysis

description: The detailed outputs from the STRING Interaction Network and PANTHER<sup>TM</sup> Classification system (Functional analysis and Overrepresentation analysis) for interaction networks with candidate genes <em>GRIN3B </em>and <em>ASAP1.</em>
DOI: 10.5281/zenodo.8027120
title: CWTS Leiden Ranking 2023

description: This data set provides the statistics made available in the 2023 edition of the CWTS Leiden Ranking. The Leiden Ranking 2023 is a bibliometric ranking of 1411 major universities worldwide. The ranking provides statistics on scientific impact, collaboration, open access publishing, and gender diversity. The ranking is based on bibliographic data from the Web of Science database produced by Clarivate.
DOI: 10.5281/zenodo.8027119
title: CWTS Leiden Ranking 2023

description: This data set provides the statistics made available in the 2023 edition of the CWTS Leiden Ranking. The Leiden Ranking 2023 is a bibliometric ranking of 1411 major universities worldwide. The ranking provides statistics on scientific impact, collaboration, open access publishing, and gender diversity. The ranking is based on bibliographic data from the Web of Science database produced by Clarivate.
DOI: 10.34740/kaggle/dsv/5986482
title: Spatiotemporal Wildlife Dataset
DOI: 10.5281/zenodo.8063252
title: Set of NGS raw data

description: 16SrDNA NGS raw data from Reunion island (Indian Ocean) - (i) from plastics (plastisphere) collected in sand or seawater on West or East coast, - (ii) sédiment or seawater sampled on West or East coast,
DOI: 10.34740/kaggle/dsv/5986527
title: AutoXGB
DOI: 10.5519/qd.gtzsbsxf
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1325 records)
DOI: 10.6084/m9.figshare.22179919
title: main dataset (sheet1), ip10 (sheet 2), baff (sheet 3)

description: Here is the data from 80 patients with SLE. This data serves as predictors to estimate the post-therapy SLEDAI with methylprednisolone pulse dose. main dataset (sheet1), ip10 (sheet 2), baff (sheet 3)
DOI: 10.6084/m9.figshare.22179919.v3
title: main dataset (sheet1), ip10 (sheet 2), baff (sheet 3)

description: Here is the data from 80 patients with SLE. This data serves as predictors to estimate the post-therapy SLEDAI with methylprednisolone pulse dose. main dataset (sheet1), ip10 (sheet 2), baff (sheet 3)
DOI: 10.5281/zenodo.7084249
title: Models and data

description: No longer available.
DOI: 10.5281/zenodo.7084248
title: Models and data

description: No longer available.
DOI: 10.5281/zenodo.4783393
title: Stress causes interspecific facilitation within a compost community

description: The R code (Hesse_EL_May2021.R) describes step by step how copper stress affects the nature of species interactions, and the role of siderophore in driving these interactions. This code accompanies the manuscript "Stress causes increased facilitation in a compost community" (under review). The R code is divided into different sections per figure (1-4 and supplementary Figure S1). Each section first starts with reading in the appropriate data files (cvs files) and continues with statistics and plotting of figures.
DOI: 10.5281/zenodo.4783392
title: Stress causes interspecific facilitation within a compost community

description: The R code (Hesse_EL_May2021.R) describes step by step how copper stress affects the nature of species interactions, and the role of siderophore in driving these interactions. This code accompanies the manuscript "Stress causes increased facilitation in a compost community" (under review). The R code is divided into different sections per figure (1-4 and supplementary Figure S1). Each section first starts with reading in the appropriate data files (cvs files) and continues with statistics and plotting of figures.
DOI: 10.34740/kaggle/dsv/5986578
title: Spatiotemporal Wildlife Dataset
DOI: 10.17632/ycz9cgxvsr.1
title: MODIFIED DELPHIC EXAMINATION OF THE CLINICAL GUIDELINE "SEDATION OF PATIENTS IN THE DEPARTMENTS OF ANESTHESIOLOGY, INTENSIVE CARE AND INTENSIVE CARE"

description: Approaches to sedation in the departments of anesthesiology, intensive care and intensive care have changed over the past 20 years. In 2020, the guidelines "Sedation of patients in the departments of anesthesiology, intensive care and intensive care" were placed in the rubric of clinical recommendations.
The purpose of this work is to contribute to improving the quality of planned updating of recommendations with the help of a modified Delphic analysis of the provisions and quality criteria of the current version of the document published in the rubricator of clinical recommendations of the Ministry of Health of the Russian Federation.
Material and methods. We used a modified Delphi method with two rounds of questionnaires to develop a consensus. The agreement of specialists was reached in three stages: preparatory, discussions and the development of a consensus conclusion. To conduct the assessment, a questionnaire was created consisting of 3 blocks: assessment of the provisions of the clinical recommendation; assessment of the quality criteria of the clinical recommendation and an overall assessment of the clinical recommendation. The assessment was made on the basis of the Likert scale. Median, fashion and weighted average score were calculated. If, when evaluating the provisions and quality criteria of a clinical recommendation, the median value or mode of any provision was less than 7, the weighted average score was less than 70%; the median value or mode of quality criteria is less than 7.5, the weighted average score is less than 75%, then this provision (quality criterion) should be recommended for processing.
Results. The assessment of the provisions and criteria was carried out in the first round of discussion. At the second round of discussion, comments and recommendations were finally developed for the developers of the methodological recommendation. Consensus was reached during two rounds of modified Delphi analysis. As a result of the analysis, 16 out of 21 provisions and 5 out of 6 quality criteria were agreed, the rest required processing.
Conclusion. As a result of an independent assessment by experts, 5 provisions and 1 quality criterion were recommended for processing. Comments and recommendations on all these provisions and quality criteria of the methodological recommendation "Sedation of patients in the departments of anesthesiology, intensive care and intensive care" were also agreed.
DOI: 10.17632/ycz9cgxvsr.2
title: Modified Delphi analysis of the clinical guideline “Sedation of patients in the departments of anesthesiology, intensive care and intensive care"

description: Approaches to sedation in the departments of anesthesiology, intensive care and intensive care have changed over the past 20 years. In 2020, the guidelines "Sedation of patients in the departments of anesthesiology, intensive care and intensive care" were placed in the rubric of clinical recommendations.
The purpose of this work is to contribute to improving the quality of planned updating of recommendations with the help of a modified Delphic analysis of the provisions and quality criteria of the current version of the document published in the rubricator of clinical recommendations of the Ministry of Health of the Russian Federation.
Material and methods. We used a modified Delphi method with two rounds of questionnaires to develop a consensus. The agreement of specialists was reached in three stages: preparatory, discussions and the development of a consensus conclusion. To conduct the assessment, a questionnaire was created consisting of 3 blocks: assessment of the provisions of the clinical recommendation; assessment of the quality criteria of the clinical recommendation and an overall assessment of the clinical recommendation. The assessment was made on the basis of the Likert scale. Median, fashion and weighted average score were calculated. If, when evaluating the provisions and quality criteria of a clinical recommendation, the median value or mode of any provision was less than 7, the weighted average score was less than 70%; the median value or mode of quality criteria is less than 7.5, the weighted average score is less than 75%, then this provision (quality criterion) should be recommended for processing.
Results. The assessment of the provisions and criteria was carried out in the first round of discussion. At the second round of discussion, comments and recommendations were finally developed for the developers of the methodological recommendation. Consensus was reached during two rounds of modified Delphi analysis. As a result of the analysis, 16 out of 21 provisions and 5 out of 6 quality criteria were agreed, the rest required processing.
Conclusion. As a result of an independent assessment by experts, 5 provisions and 1 quality criterion were recommended for processing. Comments and recommendations on all these provisions and quality criteria of the methodological recommendation "Sedation of patients in the departments of anesthesiology, intensive care and intensive care" were also agreed.
DOI: 10.17632/s3pcj99vwk.1
title: Data on plasma cortisol levels in nibbler fish Girella punctata reared under high-density conditions in either surface seawater or deep ocean water

description: Table 1. Raw data of the plasma cortisol concentration of nibbler fish reared in surface seawater, which are related to Fig. 1.
Table 2. Raw data of the plasma cortisol concentration of nibbler fish reared in deep ocean water, which are related to Fig. 1.
Table 3. Information on body weights of nibbler fish reared in surface seawater.
Table 4. Information on body weights of nibbler fish reared in deep ocean water.
DOI: 10.17632/3dkt4kpxnf.1
title: Phonotaxis of male field crickets, Gryllus bimaculatus, to conspecific calling song

description: In many cricket species, individuals fill sex-specific mating roles. For mate attraction in the field cricket Gryllus bimaculatus, males remain stationary and produce a species-specific calling song (senders) whilst females detect this signal and move towards it in a behaviour known as phonotaxis (receivers). Male G. bimaculatus have been observed responding to the calling song of conspecifics, and phonotaxis has anecdotally been reported for males in related species. Here, we aimed to quantify the tuning and intensity of male phonotaxis behaviour in G. bimaculatus by using a trackball system and established acoustic paradigms, and by comparing responses to typical female phonotaxis. Data captured shows the distanced walked (absolutle and relative) toward active speakers playing one of two main experimental paradigms; a syllable repetition interval paradigm (with different pulse periods used between chirps) and a chirp pattern paradigm (with different pulse patterns within a chirp). Data on age and date were also collected.