cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10012292.v1
title: Supplementary Material for: Treatment of Intermediate-Stage Hepatocellular Carcinoma in Japan: Position of Curative Therapies

description: <b><i>Background:</i></b> Transcatheter arterial chemoembolization (TACE) is the standard therapy for intermediate-stage (IM) hepatocellular carcinoma (HCC). However, IM-HCC includes various clinical conditions, and various therapies were conducted in practice. In this study, we retrospectively analyzed the actually conducted treatments for IM-HCC and their efficacies to elucidate the treatment strategies suitable for IM-HCC. <b><i>Methods:</i></b> This study included 627 IM-HCC of 5,260 HCC from 9 hospitals. We examined the treatment strategies of these patients and analyzed the efficacy of each therapy with the Cox proportional hazard model and propensity score-matched analysis. <b><i>Results:</i></b> Liver resection, radiofrequency ablation (RFA), and TACE were performed in 165, 108, and 351 patients, respectively. Liver resection and RFA were preferably selected in cases of Barcelona Clinic Liver Cancer (BCLC)-B1/B2, and patient survival was significantly longer than in those treated with TACE (<i>p</i>&lt; 0.0001). However, no beneficial effect of these active therapies was observed in cases of BCLC-B3/B4. Multivariate analysis revealed that surgical resection (hazard ratio = 0.384) and RFA (hazard ratio = 0.597) were negative risk factors for survival. Propensity score-matching analysis revealed that ­survival of RFA-treated patients was longer than that of TACE-treated patients (<i>p</i> = 0.036). <b><i>Conclusion:</i></b> RFA and surgical resection were effective for IM-HCC, particularly in BCLC-B1/B2 cases.
DOI: 10.6084/m9.figshare.24512401.v1
title: Targeted metabolomics reveals the association between central carbon metabolism and pulmonary nodules.

description: We supplemented the raw data of the published paper, the information on the baseline data, and the model grouping information
DOI: 10.6084/m9.figshare.23070290.v1
title: A power law of cortical adaptation

description: Each matlab file contains the results of an independent session. The reading_data_example.mlx file contains examples of how to generate some of the figures in the paper, including the power law.
DOI: 10.6084/m9.figshare.28861616.v1
title: Quantitative Assessment of Gene Expression Changes for Vascular Junction Proteins in Cerebral Microvessels from Murine Brain Slices Cultured for 12- and 24-hours.

description: Quantitative assessment of gene expression changes for the gap junction molecule Connexin43 (Cx43/Gja1) and the endothelial cell tight junction molecule Claudin12 (Cldn12) in cerebral microvessels of murine brain slices cultures for 0 hours, 12 hours, or 24 hours in oxygenated artificial cerebral spinal fluid (aCSF). <i>**NOTE: Raw Excel files for the qRT-PCR results are forthcoming.</i>
DOI: 10.6084/m9.figshare.11317697.v1
title: Population Grid for China SSP3RCP8.5

description: Population Grid for China under SSP3RCP8.5 from 2010 to 2100
DOI: 10.6084/m9.figshare.22041263.v1
title: HII segmentation maps from HIIdentify for the MUSE Atlas of Disks galaxies

description: For 36 galaxies within the MUSE Atlas of Disks (MAD) survey (Erroz-Ferrer et al. 2017), the results of using HIIdentify (hiidentify.readthedocs.io/) on the Halpha maps to identify HII regions within the galaxies are provided, as presented in Easeman et al. (2023). The fits files have 4 extensions: 1) 2D map where each pixel has a Region ID for the HII region within the galaxy to which it belongs. 2) 2D map of the distance of each pixel from the pixel designated as the peak of that HII region, in kpc. 3) 2D map showing the pixels designated as the peak of each HII region, with the associated Region ID. 4) Ha map for pixels belonging to an identified region within the galaxy.
DOI: 10.6084/m9.figshare.12818807.v2
title: Air qaulity in recent years.zip

description: Surface air quality in 74 major cities of China in recent years.
DOI: 10.6084/m9.figshare.157346.v1
title: Bacteria cladogram

description: This cladogram is a simplified version of figure 2 in Wu & Eisen ("A simple fast and accurate method of phylogenomic inference, 2008, Genome Biology 2008, 9:R151, doi:10.1186/gb-2008-9-10-r151). Also indicated in the tree are the expected possitions of eukaryote sequences with an endosymbiotic origin (indicated as CYANOBACTERIA and MITOCHONDRIA).
DOI: 10.6084/m9.figshare.14320312.v1
title: Hydro-physical properties of soil and pasture vegetation coverage under animal trampling

description: ABSTRACT Soil compaction and pasture degradation are often due to the pressure exerted by the animals’ hooves. In this sense, this study aimed to verify possible changes in the soil and changes in the pasture vegetation coverage due to animal trampling. Thus, a study was carried out on a farm in the ‘Agreste’ region of Pernambuco, Brazil. Soil samples were collected before and after the grazing period, with 36 points regularly distributed in an area of 40 × 40 m managed under continuous grazing, with a stocking rate of 12 AU ha-1. At each point, density, total porosity, humidity, and penetration resistance of the soil at a depth of 0-0.10 m, as well as hydraulic conductivity and organic matter in the soil surface, were determined. Before and after grazing, images from the Sentinel-2A satellite were also obtained to observe the response pattern of pasture vegetation over time using the Normalized Difference Vegetation Index (NDVI) and Pasture Vegetation Coverage (PVC). The physical-hydric attributes of the soil were subjected to factor analysis. NDVI and PVC maps were evaluated for spatial variability. After the grazing period, there was a change in the attributes of the soil under study due to the animal trampling. Remote sensing (NDVI and PVC) highlighted patterns of variation, such as the reduction of pasture and possible areas of preference for the animals.
DOI: 10.6084/m9.figshare.23538789.v1
title: GHG emissions of transmission pipelines by year

description: GHG emissions of transmission pipelines by year (Monte Carlo simulation results)
DOI: 10.6084/m9.figshare.24434689.v1
title: Test data for 'High-resolution topographic surveying and change detection with the iPhone LiDAR'

description: The data includes several iPhone LiDAR scans from a coastal cliff with a melting ice-food in the town of Longyearbyen on Svalbard recorded on June 15 and 24, 2023. The different 3D models overlap and can be combined into one large file or treated separately as smaller files. Change can be calculated between scans of the same area, especially focusing on the melt of the ice-foot in between the two recoding dates.Each LiDAR scan is provided in three different data formats: (i) a textured, triangulated mesh, (ii) a geo-referenced LAS point cloud with coordinates in Lat. and Long. and (iii) a geo-referenced LAZ point cloud with coordinates in meters.The data is intended as a test dataset for the protocol paper 'High-resolution topographic surveying and change detection with the iPhone LiDAR.' DOI: 10.1038/s41596-024-01024-9
DOI: 10.6084/m9.figshare.6881489.v2
title: Replication alert: behavioural lateralization in a detour test is not repeatable in fishes

description: Data for: Roche DG, Amcoff M, Morgan R, Sundin J, Andreassen AH, Finnøen MH, Lawrence MJ, Henderson E, Norin T, Speers-Roesch B, Brown C, Clark TD, Bshary R, Leungt B, Jutfelt F and Binning SA (in prep) Replication alert: behavioural lateralization in a detour test is not repeatable in fishes<br>Please see the readme.txt file for metadata.<br>Abstract:<b></b><br><b>1. </b>Behavioural lateralisation, defined as the asymmetric expression of cognitive functions, is reported to enhance key fitness-relevant traits such as group coordination, multitasking and predator escape performance. Therefore, studies reporting negative effects on lateralisation in fish due to environmental stressors such as ocean acidification, hypoxia, and pollutants are worrisome. However, such studies tend to use a detour test and focus on population-level measures, without validating whether lateralisation measured using this method is consistent within individuals across time.<b>2.</b> We conducted a multi-species, international assessment of the repeatability (<i>R</i>) of lateralisation in four previously studied fish species (<i>Ctenolabrus rupestris</i>, <i>Danio rerio</i>, <i>Neopomacentrus azysron, </i>and<i> Pomacentrus amboinensis</i>) using a detour test (T-maze), a common method for testing lateralisation. We also re-analysed a published dataset on guppies (<i>Poecilia reticulata</i>) using new statistical methods. We expected the three shoaling species to exhibit greater within-individual consistency in lateralisation than their non-shoaling counterparts given previous reports of stronger lateralisation in group-living fishes. <b>3. </b>Absolute and relative lateralisation scores were highly non-repeatable in all five species (0.01&lt;<i>R</i>&lt;0.08), irrespective of their shoaling status. We carefully reviewed 31 published studies in which the detour test was employed to examine lateralisation in fish and identified statistical issues in all of them. We develop and propose new statistical analyses to test for population- and individual-level lateralisation (along with open code). <b>4. </b>The commonly used detour test does not appear to be an appropriate method for quantifying behavioural lateralisation in fishes, calling into question functional inferences drawn by many published studies, including our own. As a consequence, potential fitness benefits of lateralisation and anthropogenic effects on lateralisation as a proxy for adaptive brain functioning need to be assessed with alternative paradigms.
DOI: 10.60893/figshare.jcp.28718771.v1
title: Supplement 2

description: data set
DOI: 10.6084/m9.figshare.1517750.v1
title: Motion along the mental number line reveals shared representations for numerosity and space

description: Single subject data from six experiments in "Motion along the mental number line reveals shared representations for numerosity and space" by Caspar M. Schwiedrzik, Benjamin Bernstein, and Lucia Melloni.
DOI: 10.6084/m9.figshare.25211147.v1
title: Supplementary Material for: Chondromyxoid Fibroma of the Clavicle: A Case Report of a Rare Clinical Entity

description: <b><i>Introduction:</i></b> Chondromyxoid fibroma is a rare benign cartilaginous tumor that accounts for less than 1% of all bone tumors and involves long bones of the lower extremities more frequently. Therefore, the clavicle is a rare location of involvement for this entity. <b><i>Case Presentation:</i></b> The authors report a case of a diaphyseal chondromyxoid fibroma of the right clavicle in a 30-year-old male that was submitted to en bloc resection of the lesion and reconstruction with an autologous tricortical graft from the iliac crest. The post-operative period was uneventful, and the patient had regained excellent function of this right shoulder. At 2 years of follow-up, there was no evidence of a recurrence of the disease. <b><i>Conclusion:</i></b> Chondromyxoid fibroma of the clavicle should be included in the differential diagnosis of an indolent growing mass in this anatomic location.
DOI: 10.6084/m9.figshare.6352517.v1
title: Bicycle Powered Centrifugal Irrigation Pump, Constant Power Varied Head Experiment

description: I wanted to measure the efficiency of the bicycle irrigation pump for a range of vertical heads, which represents farms with hills or the pressure head from using sprinklers. I also wanted to compare the bicycle pump’s efficiency to an existing human powered pump. In particular, I compared flow measurements to the published results of the Saajhi stepping pump, which is a portable treadle pump made by Xylem, Inc. Procedure: Constant Power, Varied Head The power meter’s readout software6F[1] did not display a live power reading but did display a live cadence reading. Cadence is a proxy for power if the applied torque is constant. To control the input power in this experiment, the pedaler watched the readout of cadence and tried to keep it at a level that would correspond to 100 watts7F[2]. We then took multiple trials (3 to 6 trials) at vertical heads ranging from 1 to 5 meters in increments of 1 meter. We changed the vertical head by moving the outlet hose up a staircase. The vertical head was measured on a staircase using a laser distance meter. In each trial, once the pedaler reached a stable cadence and torque, they would start a timer and simultaneously call out to the person at the outlet of the hose (the “outlet person”) to switch the water flow from filling an auxiliary bucket to filling the measurement bucket. The outlet person would then call out when the measurement bucket was filled to 20 liters, and the pedaler would stop the timer. Thus, I measured input power, height (the independent variable), time, and volume (volume over time describes the flow rate, which was the dependent variable). <br> [1] The software distributed with the DZero power meter, <i>Qalvin BLE</i>, did not record data. The compatible app that did record data <i>Wahoo Fitness</i> did not display live power readings. [2] The usual case will be that a farmer pedals at a constant sustainable rate which we targeted to be 100 watts (0.13 horsepower). According to <i>Water Lifting Devices</i>, an average adult can maintain an output of over 100 watts for more than an hour.
DOI: 10.6084/m9.figshare.26069260.v1
title: TableS1_Figshare.pdf

description: Dataset
DOI: 10.6084/m9.figshare.14529024.v1
title: Monthly oil and gas production from MISE.xlsx

description: Monthly hydrocarbon production from the Val d'Agri field, as reported to the Italian Ministry of Economic Development (MISE), in .xlsx format.<br>Original data can be found in the link given in the "References" tab.
DOI: 10.6084/m9.figshare.26861932.v1
title: Evolution of the bovid cranium: morphological diversification under allometric constraint [Dataset]

description: The datasets – including all raw data and an R script for performing all analyses – for: Bibi, F., and J. Tyler. 2022. Evolution of the bovid cranium: morphological diversification under allometric constraint. Communications Biology 5:1–12. https://doi.org/10.1038/s42003-021-02877-6This dataset was originally hosted at https://doi.naturkundemuseum.berlin/data/10.7479/499j-tv94, but was uploaded to FigShare in 2024 as the naturkundemuseum website was taken down. Abstract from the related article follows.The role of environmental selection in generating novel morphology is often taken for granted, and morphology is generally assumed to be adaptive. Bovids (antelopes and rela- tives) are widely differentiated in their dietary and climatic preferences, and presumably their cranial morphologies are the result of adaptation to different environmental pressures. In order to test these ideas, we performed 3D geometric morphometric analyses on 141 crania representing 96 bovid species in order to assess the influence of both extrinsic (e.g. diet, habitat) and intrinsic (size, modularity) factors on cranial shape. Surprisingly, we find that bovid crania are highly clumped in morphospace, with a large number of ecologically dis- parate species occupying a very similar range of morphology clustered around the mean shape. Differences in shape among dietary, habitat, and net primary productivity categories are largely non-significant, but we found a strong interaction between size and diet in explaining shape. We furthermore found no evidence for modularity having played a role in the generation of cranial differences across the bovid tree. Rather, the distribution of bovid cranial morphospace appears to be mainly the result of constraints imposed by a deeply conserved size-shape allometry, and dietary diversification the result of adaptation of existing allometric pathways.
DOI: 10.6084/m9.figshare.5117287.v3
title: data.csv

description: The collection includes data about all primary and secondary schools, public and private, located in Baden-Württemberg, Germany. The count of schools is 4,945. Data includes locations, number of students/teachers/classes, school type details and the administrative district in which school operate. Geocodes are added referencing the exact address or the post code.<br>v2: Added geocodesv3: spelling bug fix
DOI: 10.6084/m9.figshare.6473249.v2
title: Fig.7.tif

description: Fig.7. X-ray diffraction (XRD) analysis of AA1060 and the AA1060 AMCs reinforced by SiC particles.
DOI: 10.6084/m9.figshare.7735001.v1
title: Data Sharing Excel .xlsx

description: CT/NG prevalence + risk factors as presented in manuscript
DOI: 10.6084/m9.figshare.27118269.v1
title: Supplementary Material for: Efficacy of a standalone smartphone application to treat postnatal depression: a randomized controlled trial

description: Introduction: smartphone app interventions based on cognitive-behavioral therapy (CBT) are promising scalable alternatives for treating mental disorders, but the evidence of their efficacy for postpartum depression is limited. We assessed the efficacy of Motherly, a standalone CBT-based smartphone app, in reducing symptoms of postpartum depression. Methods: women aged 18-40 with symptoms of postpartum depression were randomized either to intervention (Motherly app) or active control (COMVC app). The primary outcome was symptoms of depression measured by the Edinburgh Postnatal Depression Scale (EPDS) at post-treatment. Secondary outcomes were anxiety symptoms, parental stress, quality of sleep, behavioral activation, availability of response-contingent positive reinforcement, and clinical improvement at post-treatment and 1-month follow-up. Exploratory analyses were performed to investigate if app engagement was associated with treatment response. Results: From November 2021 to August 2022, 1751 women volunteered, of which 264 were randomized, and 215 provided primary outcome data. No statistically significant differences were found between groups at post-treatment: intervention: Mean (SD): 12.75 (5.52); active control: 13.28 (5.32); p=0.604. There was a statistically significant effect of the intervention on some of the secondary outcomes. Exploratory analyses suggest a dose-response relationship between Motherly app engagement and outcomes. Conclusion: our standalone app intervention did not significantly reduce postnatal depression symptoms when compared to active control. Exploratory findings suggest that negative findings might be associated with insufficient app engagement. Consistent with current literature, our findings suggest that standalone app interventions for postpartum depression are not ready to be implemented in clinical practice.
DOI: 10.6084/m9.figshare.16669762.v1
title: communication task primary data

description: Touch communication task data. These files are collated from raw data, removing potentially identifying information and combining data across sessions, but preserving individual responses, i.e. the data are *almost* raw. <br><br>Folder structure:<br>touchcomm-psci/data/primary/<br>+ comm_expt1-collated.csv+ comm_expt2-collated.csv+ comm_expt3-collated.csv+ comm_expt4-collated.csv<br>
DOI: 10.6084/m9.figshare.21628472.v1
title: Supplementary Material for: Tip Lesion Variant of Focal and Segmental Glomerulosclerosis in a COVID-19 Patient

description: Acute kidney injury is a common complication of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. Several pathologic findings are continually being reported, showing a probably multifactorial etiology. The authors present a case of a patient diagnosed with a tip lesion variant of focal segmental glomerulosclerosis (FSGS) in the setting of COVID-19. A 43-year-old African American female with no known renal disease presented to the emergency department with a 6-day history of fatigue, headache, hypoageusia, myalgia, cough, nausea, and vomiting. Laboratory tests confirmed SARS-CoV-2 infection. During hospitalization, there was a progressive decline in kidney function and evidence of nephrotic-range proteinuria without nephrotic syndrome. Biopsy specimen showed a tip lesion variant of FSGS. Genetic test revealed a homozygous variant of uncertain clinical significance (c.397G&gt;A [p.V133M]) in the <i>epithelial membrane protein 2</i> (<i>EMP2</i>) gene. To our knowledge, this is the first case report of a tip lesion in a COVID-19 patient with no renal history. More studies are warranted to define susceptible groups and identify the detailed mechanisms of COVID-19-related kidney disease that would allow for specific management of this complication.
DOI: 10.6084/m9.figshare.23691822.v2
title: Road network data

description: Road network data of six main districts of Chengdu, including Jinjiang, Qingyang, Jinniu, Wuhou, Chenghua, and Chengdu Hi-tech Industrial Development Zone (Gaoxin district). The road network data was collected from https://www.amap.com/. Centerlines of roads were identified and represented as a line format within the ArcGIS format.
DOI: 10.6084/m9.figshare.28823690.v1
title: Extracted posts of Sustainability Influencers

description: <b>Emotion-Driven Engagement: A Sentiment Analysis on How Emotion Works in Sustainability Instagram Influencers’ posts</b>This study aims to explore the dominant emotion in the posts of eight Instagram sustainability influencers and how their followers react to them based on the engagement metrics of the posts. Fear emerged as the most dominant emotion among others with instances of burnout and less engagement.
DOI: 10.6084/m9.figshare.5126971.v1
title: Supplementary Material for: Adherence and Patients' Attitudes to Oral Anticancer Drugs: A Prospective Series of 201 Patients Focusing on Targeted Therapies

description: <b><i>Objectives:</i></b> Patient adherence is a challenge in oncology and hematology practice. Hormone therapy data in breast cancer suggest insufficient adherence and poor persistence. Limited data are available for targeted therapies (TT) including tyrosine kinase and mammalian target of rapamycin inhibitors. <b><i>Methods:</i></b> We performed a prospective survey using a 15-item questionnaire in patients with solid tumors and hematologic malignancies receiving oral anticancer therapy. Treatment duration, setting (adjuvant vs. metastatic), cancer type, age, and comedication were recorded. <b><i>Results:</i></b> 201 patients (median age 65.5 years) participated, 102 with TT and 99 with hormone therapy or chemotherapy (HC). The median time of drug intake was 11.0 months. Written information was more frequently given to TT patients (68.6 vs. 23.2%, p &lt; 0.0001). TT and HC patients showed equal adherence to therapy (72.5 vs. 69.6%, p = n.s.) despite TT patients experiencing more side effects (p &lt; 0.0001) and taking more concomitant oral medication (p = 0.0042). Forgotten doses were the leading cause of nonadherence in HC patients (83%, as compared to 54% in the TT group), whereas dose reduction by the patient was higher in the TT group (32 vs. 17%). <b><i>Conclusions:</i></b> Despite advances in providing information to patients leading to better adherence among TT patients, efforts towards better patient education are warranted including dedicated staff for monitoring outpatient anticancer oral therapy.