cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hceb57
title: Occurrence Download

description: A dataset containing 6437 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ephemerum serratum"
 ]
}

 The dataset includes 6437 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058853-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/fxnu0u
title: Diversité fongique en forêt de Mervent-Vouvant : retour d’un travail de synthèse d’inventaires mycologiques

description: La forêt de Mervent-Vouvant, plus grand massif forestier de la Vendée, est un haut-lieu de cueillette de champignons. En s’appuyant sur des inventaires effectués par les associations mycologiques, nous avons pu recenser 865 espèces et plus de 4 000 observations sur une durée qui s’étend de 1973 à 2022. Il s’agit de l’étude la plus complète, à ce jour, sur la diversité fongique en forêt de Mervent-Vouvant. La richesse fongique décrite a permis de mettre en évidence une grande variété d’espèces au sein des Ascomycota et des Basidiomycota avec des années plus ou moins riches. En lien avec la cueillette de champignons, des espèces d’intérêt comestibles et toxiques fréquemment observées ont pu être relevées. Au regard de cette richesse fongique, les missions de prévention menées par les associations et pharmaciens d’officine revêtent un caractère primordial.
DOI: 10.57745/ga5r6s
title: A dataset of perception and preferences of French consumers for commercial cooked hams sampled according to their nutritional values and claims.

description: This dataset provides sensory and nutritional information for 30 commercial cooked hams (without rind, not flavored) representative of the French commercial segment. The sensory data were collected in two phases. During the first phase (fall 2019, field experiment), 483 consumers, regular consumers of cooked hams, were recruited in seven cities and vicinities of France. They were instructed to choose and buy cooked hams at the supermarket and evaluate them at home over a period of three months. They were provided with a list of 30 eligible cooked hams selected by the experimenters. A total of 2,758 evaluations were collected (an average of 5.7 evaluations per consumer). During the second phase (fall 2020, lab experiment), a selection of 16 cooked hams were evaluated at blind by 86 consumers in a sensory analysis laboratory using a complete balanced design. Sensory evaluation at home and in the laboratory included liking Just-About-Right (colour, fat, salt and texture) measurements. In the field experiment, consumers were additionally asked to describe with free comments the appearance, texture and flavour of tested hams and of a virtual “ideal ham”. They also had to report the price they paid for a pack of four slices of ham and their intentions to repurchase the tested hams. Other data on cooked hams included actual salt and fat contents (measured using physicochemical analyses) and information displayed on the packaging (type of brand, nutritional claims, labels).
DOI: 10.57745/efvow5
title: Wetlab decision support tool to optimise the PCR amplification of rbcL barcode in diatom DNA metabarcoding

description: This decision tree guides in evaluating a biofilm sample that is problematic for diatom metabarcoding (DNA extraction and PCR steps and take decision regarding this sample (e.g. optimize DNA extraction or PCR amplification, cancel diatoms DNA analysis).
DOI: 10.57745/eom6on
title: Datasets of the publication "Cystic fibrosis alters the structure of the olfactory epithelium and the expression of olfactory receptors affecting odor perception "

description: Raw datasets plotted in all main and supplementary figures
DOI: 10.57745/gi6llz
title: Replication Data for: Molecular integral equations theory in the near critical region of CO2

description: This data contains: - the molecular direct correlation functions (DCF) of bulk CO2 in four different supercritical conditions (rho = 0.4, 0.7, 0.8 and 2.0 rho_c and T = 1.2 T_c), with rho_c and T_c the critical density and temperature of the CO2. The DCFs are obtained by combining the pair distribution function from molecular dynamics (MD) simulations with the HNC integral equations. MD simulations are done with the EPM2 force-field and the LAMMPS software. - Other correlation functions related to the DCFs: pair distribution function (gr) and the cavity potential (lny). - The jupyter notebooks used to generate the figures of the paper. - A prototypical pair of input files of LAMMPS to run the MD simulations.
DOI: 10.57745/fmz9hp
title: Data and statistics of a direct numerical simulation of adverse pressure gradient turbulent boundary layer

description: Although it is a widespread phenomenon in nature, turbulence in fluids (gases, liquids) is still very poorly understood. One area of research involves analyzing data from academic flow simulations. To make progress, the scientific community needs a large amount of reliable data in various configurations. Turbulent flows near solid flat or curved walls are very interesting examples. The database is composed of the 3D raw data (velocity, pressure, time derivative of velocity) and statistics (mean, Reynolds stresses, length scales) of a direct numerical simulations of moderate adverse pressure gradient (decelerating) turbulent boundary layer on a flat plate at Reynolds number up to Reθ = 8000 .
DOI: 10.57745/fqf2mf
title: Fiches incertitudes des modèles hydrologiques de surface du projet Explore2 : K Loire

description: Ensemble de fiche descriptives des incertitudes du projet Explore2 aux points de simulation pour la région hydrologique K Loire Accompagnement de lecture des fiches Incertitudes Le projet Explore2 a produit une quantité inédite de données hydrologiques. Ainsi, des ensembles de projections hydrologiques ont été élaborés sur près de 4000 points de simulation répartis en France hexagonale. Les fiches incertitudes visent à décrire les incertitudes de ces ensembles pour chacun des 3991 points de simulations hydrologiques (surface) obtenus avec la méthode de correction ADAMONT, pour trois indicateurs: QA, QJXA, et QMNA. Les valeurs numériques ne doivent pas être lues sur ces fiches, mais dans les fichiers de données brutes ou d’indicateurs pré-calculés mis à disposition, comme les fiches de synthèse, sur le portail « DRIAS les futurs de l’eau ». Ce document a pour objectif d’expliciter le contenu de ces fiches de synthèse des incertitudes.
DOI: 10.57745/ggsebh
title: EU Law Labour Market Corpus

description: The datasets consist of a corpus of legal sources in the EU legal system mentioning the expression “labour market” (1968 – March 2023). Data were collected from the Eur-Lex website and then coded by hand according to pre-established definitions of “labour market”. The database contains information on the year, subject matter, and institutional author of the legal text, as well as hyperlinks to the original documents.
DOI: 10.57745/go5eol
title: Development of a fermented whey-based drink

description: Ce jeu de données comporte des données associées au développement d'une boisson fermentée à base de lactosérum de fromagerie : espèces et souches de bactéries lactiques testées, capacités à fermenter le lactosérum, profil des composés volatils obtenus, nature des composés utilisés pour aromatiser la boisson.
DOI: 10.57745/gszhjo
title: ENVIRONMENTAL CONDITIONS MODULATE THE EFFECT OF EPIGENETIC FACTORS CONTROLLING THE RESPONSE OF ARABIDOPSIS THALIANA TO PLASMODIOPHORA BRASSICAE

description: Phenotypes of the response of the epiRIL population to clubroot under STANDARD, TEMPERATURE, DRY and FLOOD conditions, epigenetic map of the epiRIL population and map of genetic variants in the population. SHEET 1: Phenotyping data for STANDARD. Lfni: length of the longest leaf of uninoculated plants, Lfi: length of the longest leaf of inoculated plants, DI: disease index, GA: gall area and GALA: GA/Lfi2 index. SHEET 2: Phenotyping data for HEAT. Lfni: length of the longest leaf of uninoculated plants, Lfi: length of the longest leaf of inoculated plants, DI: disease index, GA: gall area and GALA: GA/Lfi2 index. SHEET 3: Phenotyping data for DROUGHT. Lfni: length of the longest leaf of uninoculated plants, Lfi: length of the longest leaf of inoculated plants, DI: disease index, GA: gall area and GALA: GA/Lfi2 index. SHEET 4: Phenotyping data for FLOOD. Lfni: length of the longest leaf of uninoculated plants, Lfi: length of the longest leaf of inoculated plants, DI: disease index, GA: gall area and GALA: GA/Lfi2 index. SHEET 5: Epigenetic data of the epiRIL population witht the 123 epiRIL SHEET 6 : Map of the genetic variant found within the epiRIL population
DOI: 10.57745/g9gfio
title: Fiches incertitudes des modèles hydrologiques de surface du projet Explore2 : O Garonne

description: Ensemble de fiche descriptives des incertitudes du projet Explore2 aux points de simulation pour la région hydrologique O Garonne Accompagnement de lecture des fiches Incertitudes Le projet Explore2 a produit une quantité inédite de données hydrologiques. Ainsi, des ensembles de projections hydrologiques ont été élaborés sur près de 4000 points de simulation répartis en France hexagonale. Les fiches incertitudes visent à décrire les incertitudes de ces ensembles pour chacun des 3991 points de simulations hydrologiques (surface) obtenus avec la méthode de correction ADAMONT, pour trois indicateurs: QA, QJXA, et QMNA. Les valeurs numériques ne doivent pas être lues sur ces fiches, mais dans les fichiers de données brutes ou d’indicateurs pré-calculés mis à disposition, comme les fiches de synthèse, sur le portail « DRIAS les futurs de l’eau ». Ce document a pour objectif d’expliciter le contenu de ces fiches de synthèse des incertitudes.
DOI: 10.57745/gqc1l9
title: Dataset for common wheat (Triticum aestivum L.) grain and flour characterization using classical and advanced analyses: farinograph and alveograph curves

description: The dataset includes raw data files for alveogram and farinograph measurements. These data are available in .txt or .xls files formats. All the files are organized into folders by year of harvest, with one sub-folder for each sample. For the alveogram, filenames correspond to the sample code. By example 20-00872.txt is the raw data file associated with the sample 20-00872. For the farinograph, filenames include the sample code in the filename which is composed of 4 groups of figures. By example ‘865 22 20 00886.xls’ is the raw data file associated with the sample 20-00886.
DOI: 10.57745/gu6wdg
title: Predictive metabolomics of pearl millet phenotypic traits using a germoplasm panel of genetic diversity

description: Metabolic diversity in genotypes of the germplasm core collection of Pearl millet from Embrapa, Brazil
DOI: 10.57745/fyxkxy
title: UnderPressure - A motion capture dataset synchronised with foot pressure insoles data for foot contact detection, ground reaction force estimation and footskate cleanup

description: We propose a novel database of human motion sequences captured together with pressure insoles data. For further details please refer to the research article describing the capture process.
DOI: 10.57745/gi1jwd
title: Guide d’aide à la rédaction rapide de formulaires avec l’outil Open Data Kit (ODK)

description: L'outil ODK est une suite de logiciels libres, à la fois un serveur (ODK Central) et une appli de collecte de données sur le terrain (ODK Collect sur Android). Il est générique et très polyvalent car il permet de créer des formulaires ou questionnaires pour des enquêtes de terrain, des sondages, gestion de matériels, inscriptions à des événements,... Ce guide a été développé comme un support de formation interne et permet d'apprendre rapidement à rédiger un formulaire ODK qui peut ensuite téléversé sur le serveur et utilisé pour collecter des données.
DOI: 10.57745/gum6rc
title: Châteaux et villes fortes du comté de Vaudémont en Lorraine du Xème au XVème siècles (CD ROM)

description: Corpus inédit de plans, dessins d’architecture et photographies : - Le fichier archive nommé CD-ROM présente l’intégralité du contenu du CD-ROM accompagnant initialement la version imprimée de l'ouvrage y compris tous les éléments interactifs et téléchargeables : Giuliato, Gérard, 2025, "Châteaux et villes fortes du comté de Vaudémont en Lorraine du Xème au XVème siècles - Le fichier archive nommé "Données brutes" reprend uniquement les fichiers sources (images au format gif et jpg sous licence CC BY-NC-ND 4.0)
DOI: 10.57745/eplamr
title: Revisiting dilution and barrier to better disentangle their effects on epidemics in crop mixtures

description: This Python notebook encodes the numerical computations related to the article "Revisiting dilution and barrier to better disentangle their effects on epidemics in crop mixtures"
DOI: 10.57745/fb9ovn
title: Periconia digitata genome

description: The genome was assembled from PacBio Hifi reads with a highly accurate median accuracy of &gt;99.9% (Q30) using the HiCanu assembler.
DOI: 10.57745/guq1qr
title: ASCA and celiac disease

description: serological data, Excel file format
DOI: 10.57745/hbqwp5
title: CAMELS-FR time series dynamic graphs

description: These dynamic graphs are derived from the "CAMELS-FR dataset". A html file is provided for each catchment, where dynamic plots of hydroclimatic time series are displayed. The files are available in a few languages.
DOI: 10.57745/hhe4cz
title: Sequence-based genome-wide association studies reveal the polygenic architecture of Varroa destructor resistance in Western honey bees Apis mellifera

description: This repository contains data linked to the publication: Sequence-based genome-wide association studies reveal the polygenic architecture of Varroa destructor resistance in Western honey bees Apis mellifera by SE Eynard, F Mondet, B Basso, O Bouchez, T Bulach, Y Le Conte, B Dainat, A Decourtye, L Genestout, M Guichard, F Guillaume, E Labarthe, B Locke, R Mahla, J de Miranda, M Neuditschko, F Phocas, Y Poquet, C Sann, RF Serre, K Tabet, A Vignal and B Servin [Preprint] (2024). https://doi.org/10.1101/2024.02.16.580755. It includes a file summarising the sequence availability on SRA, the phenotypes, the 'count' files produced using popoolation 2 from mpileup files, the summary statistics from the GWAS analysis performed for a unique population and phenotype using GEMMA and the fixed version, 15/03/2024, of the scripts available on GitHub (https://github.com/seynard/gwas_beestrong)
DOI: 10.57745/hepgag
title: SALMEVOL 1041 - Long Term Monitoring of Kerguelen Islands Colonization by Introduced Salmonids.

description: This dataset describes the colonization dynamics of 8 introduced species + 1 hybrid complex of salmonids in the subAntarctic Kerguelen islands. It is composed of 1 matrix of presence-absence in space (rivers) and time (years) for each species. River names have been associated to SANDRE / COLISA codes (COLISA is a CRB from IR RARE). The format is an excel file with multpile sheets, with one sheet describing river data, one sheet describing species data, and all other sheets being species-specific colonization matrices (space X time).
DOI: 10.57745/g1lwnd
title: Aires d’accueil des gens du voyage, exposition aux aménités et désaménités environnementales et accès aux services publics

description: Ce jeu de données est une couche d'information géographique décrivant à partir de la localisation des aires d’accueil de gens du voyage les différents enjeux auxquels elles sont exposées, d’un point de vue socio-économique, environnemental ou en termes d’accessibilité aux services publics. Les différents types d’aires (accueil, grand passage, petit passage, etc) sont recensés à partir de la fusion entre une extraction d’Open Street Map en Novembre 2023 (https://wiki.openstreetmap.org/wiki/FR:Aires_d%27accueil_des_gens_du_voyage) et la couche produite par William Acker en 2021 (disponible ici https://visionscarto.net/aires-d-accueil-les-donnees). En effet certaines nouvelles aires n’étaient pas détectées dans la base de 2021, d’autres ont été déplacées ou supprimées. Le document PDF décrit l'ensemble des champs du fichier Excel et de la couche SIG associée, les sources, ainsi que les méthodes de calcul de l'environnement naturel et socio-économique des aires d’accueil des gens du voyage.
DOI: 10.57745/fuqgsg
title: Database of the literature on demo-genetic agent-based models (DG-ABMs) simulating interindividual interactions

description: This dataset is a database of 89 original research studies using demo-genetic agent-based models (DG-ABMs) simulating interindividual interactions affecting fitness. Beside the complete reference of each study, this table describes in details the main features of each model, i.e. the type of interaction, the evolvable trait, the eco-evolutionary feedback, the inheritance model, and the possibility to account for management practices.
DOI: 10.57745/fywbiy
title: Plan de Gestion des Données de la Plateforme PRESTI

description: Plan de Gestion des Données (PGD) de la Plateforme de Recherche et Expérimentation en Sciences et Techniques de l’Irrigation (PRESTI). Ce PGD est basé sur le modèle INRAE structure. La plateforme PRESTI est pilotée par INRAE et rattachée à l’UMR Gestion de l’Eau, Acteurs et Usages (G-EAU).
DOI: 10.57745/g2rq3e
title: Molecular dynamics data for UDG-dsDNA

description: UDG-dsDNA-MD simulation. Initially, the UDG-dsDNA complex was solvated using the TIP3P water model, and 0.15 M sodium and chloride ions were added to neutralize the system. Before running the production MD, minimization and equilibration steps were performed on the UDG-dsDNA complex. The final MD production run was conducted on the system for 500 ns to obtain a stable configuration. The 'input' folder contains the files necessary to run the simulation, while the 'output' folder contains the resulting trajectory.
DOI: 10.57745/hpyzf7
title: Analyse_5_duplicated_loci_detection

description: duplicated_loci_detection
DOI: 10.57745/i69yff
title: SIECRT - Small Island Economies COVID-19 Response Tracker

description: SIECRT is a new dataset focused on public health measures adopted by 26 small affiliated island economies in their fight against the Covid-19 pandemic, between January 1, 2020, and April 31, 2021, with some exceptions extending until October 30, 2021. This dataset stands out from previous ones by focusing on affiliated island territories, often overlooked in other databases. It includes eight public health measures, such as restrictions on gatherings, educational establishments, and international travel. Each measure is coded daily.
DOI: 10.57745/gxzhh8
title: MD simulations and ML dataset of HLA-EpiCheck epitope predictor tool

description: This dataset contains all the data used to implement the B-cell epitope predictor tool called HLA-EpiCheck (see https://doi.org/10.1101/2023.12.18.572133). CONTENTS: - pre-patches: Directory containing the computed pre-patches. A pre-patch corresponds to the set of residues within a given distance from a residue. The patches are generated subsequently by keeping only the solvent-accessible residues. Files are organized by locus and by antigen. A file contains the pre-patches associated to a given residue computed for any frame considered in the trajectory. + _patches_resid__size_.txt: Each line in the file corresponds to a pre-patch of a given frame. Line format : : Residue numbering is the same as in the PDB files. - trajectories: Directory contaning the MD data. Files are organized by locus and by antigen. + .dcd: 10ns MD trajectory comprising 1000 frames. Water molecules were removed. + .psf: Topology file of the .dcd trajectory. + .pdb: Starting structure of the MD simulation. - training_set_size_15.csv: training set used to train HLA-EpiCheck. - test_set_size_15.csv: test set used to evaluate HLA-EpiCheck. - table_patch_ID_antigen_residue.csv: Table containing the antigen and central residue associated to each patch. - model_ERF_radius_15.pkl: ML model of HLA-Epicheck in pickle format. Pickle version 4.0 used. - descriptors_eplets_non-confirmed.csv: Descriptors of the non-confirmed residue patches. - preds_non_confirmed_DQ.csv: HLA-EpiCheck predictions on the non-confirmed residue patches of eplets from locus DQ. - PDB_modeled_structures.txt : List of antigens modeled from a PDB structure with the corresponding PDB entry.
DOI: 10.57745/hf9nfg
title: Meta-analysis data to the publication "Meta-analysis reveals strong evidence for adaptive host and vector manipulation by plant viruses"

description: This dataset provides the meta-analysis database (1 file), the meta-analysis R code (1 file) and the metadata from the article by Chesnais Q., Bahlai C.A., Peace A., Crowder D.W., Bosque-Pérez N.A., and Mauck K.E. entitled "Meta-analysis reveals strong evidence for adaptive host and vector manipulation by plant viruses". We used meta-analysis to combine data from 215 studies to quantify convergence in virus effects on host plants that influence vector orientation behavior, feeding behavior, and performance. We compared effects across taxonomic groups of viruses that share transmission mechanism traits and thereby benefit from inducing changes in host plants that stimulate similar sequences of vector behavior and similar effects on vector performance.
DOI: 10.57745/hnatuy
title: RPG complété 2018 département 24

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 24. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.57745/ii6dma
title: J2000 Hydrological model of the Ain-Albarine river basin (France)

description: J2K_Ain: J2000 hydrological model for the Ain river basin (which includes the Albarine sub-basin).