cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57760/sciencedb.22831
title: Anti-Pathogenic Bacterium Factor Database (APBFD)
title: Anti-Pathogenic Bacterium Factor Database (APBFD)

description: Pathogenic bacteria are microorganisms that can cause disease, also known as pathogenic microorganisms, including bacteria, viruses, spirochetes, rickettsia, chlamydia, mycoplasma, fungi and actinomycetes. In the survival and development of human beings, the emergence of pathogenic bacteria has caused a series of diseases, such as infection, typhoid fever, tuberculosis and so on. However, with the deepening of research on anti-pathogenic factors, the number of drugs used to treat various bacterial infections or diseases caused by pathogenic microorganisms has gradually increased. In order to integrate the data resources and results of numerous studies and promote comparative studies, literature review and information extraction and analysis were carried out, thereby constructing a factor knowledge base for antagonizing pathogenic bacteria to assist research on antagonizing pathogenic bacteria and treating related diseases, covering The name, molecular mass, molecular formula, CAS number, source, class, mechanism of action, minimum inhibitory concentration, antibacterial spectrum, adverse reactions, references and corresponding links of antibacterial factors are listed. This interface supports the query function of the content of the above anti-pathogen factors. Therefore, this knowledge base will contribute to further research on the related factors of ant-pathogenic bacteria and the treatment of diseases caused by them, and promote the screening strategy of antibacterial factors.
description: Pathogenic bacteria are microorganisms that can cause disease, also known as pathogenic microorganisms, including bacteria, viruses, spirochetes, rickettsia, chlamydia, mycoplasma, fungi and actinomycetes. In the survival and development of human beings, the emergence of pathogenic bacteria has caused a series of diseases, such as infection, typhoid fever, tuberculosis and so on. However, with the deepening of research on anti-pathogenic factors, the number of drugs used to treat various bacterial infections or diseases caused by pathogenic microorganisms has gradually increased. In order to integrate the data resources and results of numerous studies and promote comparative studies, literature review and information extraction and analysis were carried out, thereby constructing a factor knowledge base for antagonizing pathogenic bacteria to assist research on antagonizing pathogenic bacteria and treating related diseases, covering The name, molecular mass, molecular formula, CAS number, source, class, mechanism of action, minimum inhibitory concentration, antibacterial spectrum, adverse reactions, references and corresponding links of antibacterial factors are listed. This interface supports the query function of the content of the above anti-pathogen factors. Therefore, this knowledge base will contribute to further research on the related factors of ant-pathogenic bacteria and the treatment of diseases caused by them, and promote the screening strategy of antibacterial factors.
DOI: 10.3535/0zp-b4c-22q
title: Mithraculus forceps A. Milne-Edwards, 1875

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pkx-zlf-436
title: Crangon allmanni Kinahan, 1860

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/50w-tdb-n54
title: Cancer pagurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k4e-499-byz
title: Mithraculus coryphe (Herbst, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6qj-s46-7lr
title: Crangon crangon (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8sh-ydm-pb7
title: Macrobrachium lanchesteri (De Man, 1911)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cdh-cdh-r5p
title: Thenus orientalis (Lund, 1793)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/15a-dpw-szb
title: Macropodia tenuirostris (Leach, 1814)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/58s-qx6-kby
title: Pseudoveleronia laevifrons (Holthuis, 1951)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.57760/sciencedb.22781
title: Vanillin Derivatives Database (VDD)
title: Vanillin Derivatives Database (VDD)

description: Cancer is one of the common clinical diseases, there are a large number of patients who died from cancer in the world. Although chemotherapy is important method to against cancer, the adverse effects and multidrug resistance of chemotherapeutic drugs require us to develop new chemical drugs to fight with cancer. It is a good strategy to find new drugs that establish a small molecule database and use a combination of computer virtual screening and experimental screening to discover a new drug for specific target proteins, cell lines, bacteria, and pests. The method of screen in the database greatly improved the rate of new drug discovery which can find small molecules with good activity in a very short time. Here, we prove a new vanillin derivatives database which have integrated the data information of vanillin such as structure, activity and toxicity. The database will provide a broad source of Vanillin derivatives and it will help for the subsequent screening of Vanillin derivatives for various bioactivity.
description: Cancer is one of the common clinical diseases, there are a large number of patients who died from cancer in the world. Although chemotherapy is important method to against cancer, the adverse effects and multidrug resistance of chemotherapeutic drugs require us to develop new chemical drugs to fight with cancer. It is a good strategy to find new drugs that establish a small molecule database and use a combination of computer virtual screening and experimental screening to discover a new drug for specific target proteins, cell lines, bacteria, and pests. The method of screen in the database greatly improved the rate of new drug discovery which can find small molecules with good activity in a very short time. Here, we prove a new vanillin derivatives database which have integrated the data information of vanillin such as structure, activity and toxicity. The database will provide a broad source of Vanillin derivatives and it will help for the subsequent screening of Vanillin derivatives for various bioactivity.
DOI: 10.3535/fmg-zvl-24l
title: Periclimenes amethysteus (Risso, 1827)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zhs-hjd-6nb
title: Pseudoveleronia laevifrons (Holthuis, 1951)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/68p-sla-rfl
title: Hymenopenaeus chacei Crosnier & Forest, 1969

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r7l-c7q-9kx
title: Arcania novemspinosa (Lichtenstein, 1815)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l97-a45-kbl
title: Sanquerus validus (Herklots, 1851)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.g47tpt
title: Occurrence Download

description: A dataset containing 181 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Parantechinus apicalis (Gray, 1842)"
 ]
}

 The dataset includes 181 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105031-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/lgn-v7f-lyy
title: Palaemon longirostris H. Milne-Edwards, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xmn-0fa-j6b
title: Palaemon longirostris H. Milne-Edwards, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.57760/sciencedb.22778
title: Serofluid dish Microbiome Database (SMD)
title: Serofluid dish Microbiome Database (SMD)

description: Serofluid dish is one of the most popular probiotic fermented foods in northern China with a long history. It has not only unique flavor, but also rich nutrition, which is beneficial to human health. There are a lot of probiotics resources in Serofluid dish, such as Lactobacillus and Acetobacter are its dominant species. The lactic acid bacteria contained in it can promote gastrointestinal peristalsis, digestion and absorption after entering the human digestive tract; it also can reduce cholesterol and enhance the body's immunity. In Lanzhou, it is not only a local specialty representative of the region, but also a symbol of the local food culture, attracting a large number of domestic food lovers. Based on the systematic study of the microbial community structure of Serofluid dish, the separation and identification results of natural fermentation Serofluid dish samples collected from different geographical locations were summarized, and the database was compiled. The main contents of the database include: species and genera of culturable microorganisms isolated from Serofluid dish, and GenBank accession, corresponding media and other information.
description: Serofluid dish is one of the most popular probiotic fermented foods in northern China with a long history. It has not only unique flavor, but also rich nutrition, which is beneficial to human health. There are a lot of probiotics resources in Serofluid dish, such as Lactobacillus and Acetobacter are its dominant species. The lactic acid bacteria contained in it can promote gastrointestinal peristalsis, digestion and absorption after entering the human digestive tract; it also can reduce cholesterol and enhance the body's immunity. In Lanzhou, it is not only a local specialty representative of the region, but also a symbol of the local food culture, attracting a large number of domestic food lovers. Based on the systematic study of the microbial community structure of Serofluid dish, the separation and identification results of natural fermentation Serofluid dish samples collected from different geographical locations were summarized, and the database was compiled. The main contents of the database include: species and genera of culturable microorganisms isolated from Serofluid dish, and GenBank accession, corresponding media and other information.
DOI: 10.3535/511-2v0-690
title: Macrobrachium olfersii (Wiegmann, 1836)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8yh-6jy-bf3
title: Hapalocarcinus marsupialis Stimpson, 1859

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j37-3ea-fwt
title: Upogebia savignyi (Strahl, 1862)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vf9-6dk-hdt
title: Pasiphaea tarda Krøyer, 1845

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ewr-ds5-kv1
title: Gelasimus vocans (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.57760/sciencedb.22835
title: Database of Probiotics Culture Medium (DPCM)
title: Database of Probiotics Culture Medium (DPCM)

description: The primary objective of this database is to explore the prediction of novel independent biological culture media based on the Probiotic Culture Media Database (DPCM). In this study, we systematically collected existing culture media formulations from authoritative resources such as ATCC to establish the DPCM database. Following strain isolation and purification, we extracted genomic DNA and performed PCR amplification coupled with 16S rDNA sequencing. Subsequent bioinformatic analysis of the 16S rDNA sequences enabled comprehensive database construction. Using this methodological framework, we successfully predicted suitable culture media formulations for several previously uncharacterized microbial strains. Through extensive experimental validation, we have demonstrated the significant practical application value of this database in facilitating the development of optimized culture conditions for diverse microbial species.
description: The primary objective of this database is to explore the prediction of novel independent biological culture media based on the Probiotic Culture Media Database (DPCM). In this study, we systematically collected existing culture media formulations from authoritative resources such as ATCC to establish the DPCM database. Following strain isolation and purification, we extracted genomic DNA and performed PCR amplification coupled with 16S rDNA sequencing. Subsequent bioinformatic analysis of the 16S rDNA sequences enabled comprehensive database construction. Using this methodological framework, we successfully predicted suitable culture media formulations for several previously uncharacterized microbial strains. Through extensive experimental validation, we have demonstrated the significant practical application value of this database in facilitating the development of optimized culture conditions for diverse microbial species.
DOI: 10.3535/cr0-pdm-vvy
title: Upogebia savignyi (Strahl, 1862)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/we5-b8m-8s7
title: Mithraculus coryphe (Herbst, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7nc-35c-m5p
title: Percnon gibbesi (H. Milne Edwards, 1853)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gkk-kvg-z5z
title: Mithraculus sculptus (Lamarck, 1818)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.57760/sciencedb.22787
title: Database of Tumor Early-Screening Based on Microbiome (DTS-MB)
title: Database of Tumor Early-Screening Based on Microbiome (DTS-MB)

description: Colorectal cancer (CRC) is a common clinical malignancy globally ranked as the fourth leading cause of cancer mortality. Some microbes are known to contribute to adenoma-carcinoma transition and possess diagnostic potential. Advances in high-throughput sequencing technology and functional studies have provided significant insights into the landscape of the gut microbiome and the fundamental roles of its components in carcinogenesis. With the aim of integrating the available data resources and facilitating comparative research, literature review and information extraction were performed, including microbe name, sensitivity, specificity, change of abundance, function of the microbe, technology, algorithm, number of cases, sources and links. Microbes that displayed statistical significance in both high-throughput sequencing/pyrosequencing and qPCR experiments were defined as 'Class One', those confirmed with one of the above techniques as 'Class Two', and combinations of different microbes for diagnosis as 'Class Three'. The interface supports query functions, such as “scientific name of the bacterium” and “taxonomy”. Thus, this knowledgebase will contribute to further study about CRC-related microbes and promotion of cost-effective and noninvasive CRC screening strategies.
description: Colorectal cancer (CRC) is a common clinical malignancy globally ranked as the fourth leading cause of cancer mortality. Some microbes are known to contribute to adenoma-carcinoma transition and possess diagnostic potential. Advances in high-throughput sequencing technology and functional studies have provided significant insights into the landscape of the gut microbiome and the fundamental roles of its components in carcinogenesis. With the aim of integrating the available data resources and facilitating comparative research, literature review and information extraction were performed, including microbe name, sensitivity, specificity, change of abundance, function of the microbe, technology, algorithm, number of cases, sources and links. Microbes that displayed statistical significance in both high-throughput sequencing/pyrosequencing and qPCR experiments were defined as 'Class One', those confirmed with one of the above techniques as 'Class Two', and combinations of different microbes for diagnosis as 'Class Three'. The interface supports query functions, such as “scientific name of the bacterium” and “taxonomy”. Thus, this knowledgebase will contribute to further study about CRC-related microbes and promotion of cost-effective and noninvasive CRC screening strategies.
DOI: 10.3535/hxh-n1b-7la
title: Troglocarcinus corallicola Verrill, 1908

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ka2-a6y-461
title: Troglocarcinus corallicola Verrill, 1908

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w6s-ktx-c2w
title: Callinectes danae Smith, 1869

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ap5-0rd-3ab
title: Macropodia rostrata (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xts-ldf-g4e
title: Mithraculus sculptus (Lamarck, 1818)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.57760/sciencedb.22834
title: Probiotics Database (PBDB)
title: Probiotics Database (PBDB)

description: The Probiotics Database (PBDB) is a comprehensive bioinformatics resource that systematically collects and categorizes probiotic strains derived from diverse fermented food sources. Currently housing 1,730 well-characterized probiotic strains, the database features a structured classification system including production-related (768 strains), research-oriented (264 strains), environmental protection (22 strains), disease prevention and treatment (17 strains), and other specialized categories (659 strains). Designed as a dynamic knowledge platform, PBDB provides essential biological information to support research across human health, animal science, and agricultural applications, with regular updates to incorporate new discoveries. Beyond serving as a reference repository, the database enables advanced bioinformatics analyses to elucidate probiotic mechanisms and facilitates the computational prediction of novel probiotic candidates from unexplored microbial resources. By integrating empirical data with analytical tools, PBDB significantly enhances our capacity to understand, develop, and apply probiotic solutions across multiple scientific and industrial domains.
description: The Probiotics Database (PBDB) is a comprehensive bioinformatics resource that systematically collects and categorizes probiotic strains derived from diverse fermented food sources. Currently housing 1,730 well-characterized probiotic strains, the database features a structured classification system including production-related (768 strains), research-oriented (264 strains), environmental protection (22 strains), disease prevention and treatment (17 strains), and other specialized categories (659 strains). Designed as a dynamic knowledge platform, PBDB provides essential biological information to support research across human health, animal science, and agricultural applications, with regular updates to incorporate new discoveries. Beyond serving as a reference repository, the database enables advanced bioinformatics analyses to elucidate probiotic mechanisms and facilitates the computational prediction of novel probiotic candidates from unexplored microbial resources. By integrating empirical data with analytical tools, PBDB significantly enhances our capacity to understand, develop, and apply probiotic solutions across multiple scientific and industrial domains.
DOI: 10.15468/dl.5xgxqk
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Phascogale pirata (Thomas, 1904)"
 ]
}

 The dataset includes 110 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105032-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/qav-jc4-4yt
title: Mithraculus coryphe (Herbst, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/76v-j3n-652
title: Upogebia savignyi (Strahl, 1862)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a41-4xc-sln
title: Charybdis (Archias) truncata (Fabricius, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dgt-npj-a4v
title: Mithraculus sculptus (Lamarck, 1818)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1dr-mxw-za4
title: Galene bispinosa (Herbst, 1783)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v9m-er4-7ae
title: Macropodia linaresi Forest & Zariquiey Álvarez, 1964

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lnq-7rn-5z0
title: Mithraculus coryphe (Herbst, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qr2-m7p-3d9
title: Petrolisthes dissimulatus Gore, 1983

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8te-3vl-cet
title: Crangon crangon (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t0g-8d7-1qw
title: Ilia spinosa Miers, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.