cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p5hd0/17
title: ChipmunkFull400

description: Full dataset for 400 m segments. ID = pair-wise comparison, cat = dependent variable for logistic regression, pmem = dependent variable for multiple regression, forest = proportion of forest in 400 m segment, ntc = proportion of non-treed corridors in 400 m segment, road = proportion of roads in 400 m segment, grass = proportion of grassland in 400 m segment, shrub = proportion of shrubland in 400 m segment, treedcorr = proportion of treed corridors in 400 m segment, urban = proportion of urban land in 400 m segment, water = proportion of water/wetland in 400 m segment
DOI: 10.5061/dryad.p5hd0/18
title: ChipmunkFull1000

description: Full dataset for 1000 m segments. ID = pair-wise comparison, cat = dependent variable for logistic regression, pmem = dependent variable for multiple regression, forest = proportion of forest in 1000 m segment, ntc = proportion of non-treed corridors in 1000 m segment, road = proportion of roads in 1000 m segment, grass = proportion of grassland in 1000 m segment, shrub = proportion of shrubland in 1000 m segment, treedcorr = proportion of treed corridors in 1000 m segment, urban = proportion of urban land in 1000 m segment, water = proportion of water/wetland in 1000 m segment
DOI: 10.5061/dryad.p5hd0/19
title: ChipmunkValidation_Results

description: Validation results for each regression. LR = Logistic regression, MR = Multiple regression. Results are given as count data in 50 bootstrap increments and proportions of incorrect and correct data. Each bootstrap iteration was resampled 1000 times where 14 individuals were randomly selected.
DOI: 10.5061/dryad.p5hd0/20
title: Sub1

description: Example of subsample used for validation. ID = pair-wise comparison, cat = dependent variable for logistic regression, pmem = dependent variable for multiple regression, forest = proportion of forest in segment, ntc = proportion of non-treed corridors in segment, road = proportion of roads in segment, grass = proportion of grassland in segment, shrub = proportion of shrubland in segment, treedcorr = proportion of treed corridors in segment, urban = proportion of urban land in segment, water = proportion of water/wetland in segment
DOI: 10.5061/dryad.tj57h/1
title: Pure Species Mating Rates

description: This file contains data from the paper entitled "Asymmetrical sexual isolation but no postmating isolation between the closely related species Drosophila suboccidentalis and Drosophila occidentalis".  This specific file contains data detailing pure species mating rates (Figure 1 from the paper).  Each row represents a single pair of flies that were involved in a no-choice mate trial.  A "1" in the "Mated(1=Yes)" column represents a pair of flies that successfully copulated within the allotted time frame.  A "0" in this column indicated that the pair failed to copulate. The "Female_Species" column indicates the species of female in each pairing. The "Male_Species" column indicates the species of male in each pairing. "Suboccidentalis" refers to a pure Drosophila suboccidentalis individual.  "Occidentalis" refers to a pure Drosophila occidentalis individual.
DOI: 10.5061/dryad.tj57h/2
title: Pure and Hybrid Female's Egg Counts

description: This file contains data from the paper entitled "Asymmetrical sexual isolation but no postmating isolation between the closely related species Drosophila suboccidentalis and Drosophila occidentalis".  This specific file contains data detailing pure species female and hybrid individual female egg production (Figure 3 from the paper).  Each row represents a single pair of flies.  These flies were mated and the number of eggs produced by each female was tallied in the column titled "Egg_Count".  The "Female_Type" column indicates whether the female fly in each pairing was a pure species individual or a hybrid individual.  The "Male_Type" column indicates whether the male fly in each pairing was a pure species individual or a hybrid individual.  "Suboccidentalis" refers to a pure species Drosophila suboccidentalis individual.  "Occidentalis" refers to a pure species Drosophila occidentalis individual.  "F1(OxS)" refers to a hybrid individual generated by crossing a Drosophila occidentalis female to a Drosophila suboccidentalis male.  "F1(SxO)" refers to a hybrid individual generated by crossing a Drosophila suboccidentalis female to a Drosophila occidentalis male.
DOI: 10.5061/dryad.vm752/6
title: Black Queen Monod model and fit to linear frequency dependence

description: Monod model of a black queen interaction, including dynamics of daily resource use, toxin reduction, and growth. Fits post-growth cycle relative frequencies to a linear parameterization of frequency dependent fitness.
DOI: 10.5061/dryad.033ds/10
title: Sebacinales_28S_tree

description: Bayesian majority-rule consensus tree of Sebacinales based on part of 28S. The tree is in newick format.
DOI: 10.5061/dryad.033ds/11
title: Tulasnellaceae5.8S+28S_alignment

description: Alignment of 5.8S and short part of 28S sequences of Tulasnellaceae species produced by MAFFT and used for infering phylogeny. This file is in nexus format and contains sequence alignment and MrBayes input data.
DOI: 10.5061/dryad.033ds/12
title: Tulasnellaceae5.8S+28S_tree

description: Bayesian majority-rule consensus tree of Tulasnellaceae based on 5.8S and short part of 28S. The tree is in newick format.
DOI: 10.5061/dryad.033ds/4
title: Neottia_18S_tree

description: Bayesian majority-rule consensus trees based on 18S of several Neottia species. The tree is in newick format.
DOI: 10.5061/dryad.033ds/5
title: Neottia_ITS_alignment

description: Alignment of ITS sequences of several Neottieae species produced by MAFFT and used for infering Neottia phylogeny. This file is in nexus format and contains sequence alignment and MrBayes input data.
DOI: 10.5061/dryad.033ds/6
title: Neottia_ITS_tree

description: Bayesian majority-rule consensus tree based on ITS. The tree is in newick format.
DOI: 10.5061/dryad.033ds/7
title: Neottia_trnL(UAA)intron_alignment

description: Alignment of trnL(UAA) intron sequences of several Neottieae species produced by MAFFT and used for infering Neottia phylogeny. This file is in nexus format and contains sequence alignment and MrBayes input data.
DOI: 10.5061/dryad.033ds/8
title: Neottia_trnL(UAA)intron_tree

description: Bayesian majority-rule consensus tree based on trnL(UAA) intron. The tree is in newick format.
DOI: 10.5061/dryad.033ds/9
title: Sebacinales_28S_alignment

description: Alignment of 28S sequences of Sebacinales produced by MAFFT and used for infering Sebacinales phylogeny. This file is in nexus format and contains sequence alignment and MrBayes input data.
DOI: 10.5061/dryad.668n0/1
title: StableisotopeDATA

description: This dataset includes stables isotope values of carbon and nitrogen measured from ants and other arthropods in New York City. It indicates the sample ID, the sample location (lat/long), and stable isotope ratios.
DOI: 10.5061/dryad.f4925/1
title: Summary

description: Data summarizing the outcomes of trials between unrestrained trap-jaw ants (Odontomachus brunneus) and pitbuilding antlions
DOI: 10.5061/dryad.f4925/2
title: Restraint Experiment

description: .csv file with the outcome data for predatory trials in the restraint experiment
DOI: 10.5061/dryad.h1c09/1
title: Data and Code

description: This package contains code and a subset of data to replicate the analyses in our paper, A process-independent explanation for the general form of Taylor's Law, by X. Xiao, K. J. Locey, and E. P. White.
DOI: 10.5061/dryad.n893m/1
title: Genotypic data along the linkage maps used for QTL analysis

description: In this file, genotypic data for QTL analyses of the three crosses are given. Format of these data follows the input for R/qtl (Broman et al., 2003) with two segregating states (homozygous AA and heterozygous AB), accounting for male informative markers used for the QTL analysis (no intercross markers were used). The number of specimens analysed for each brood is determined by the number of offspring used for the final linkage maps which have at least one intact forewing and one intact hindwing.
DOI: 10.5061/dryad.n893m/2
title: Morphometric quantification of wing pattern used for QTL analysis

description: This file contains phenotypic data for QTL analysis of the three crosses. These data are derived from the morphometric quantification of wing pattern using Colour Pattern Modelling (CPM; Le Poul et al., 2014) and are given for each offspring as the principal components (PCs) derived from the Principal Component Analysis (PCA). Only axes explaining more than 1% of the variance are used. The number of specimens analysed for each brood is determined by the number of offspring used for the final linkage maps which have at least one intact forewing and one intact hindwing.
DOI: 10.5061/dryad.nf515/1
title: Poa alsodes demographic transitions

description: Survival, growth, and reproduction of Poa alsodes individuals in experimental plots 2008-2011. Populations established at the Indiana University Research and Teaching Preserve at Lilly Dickey Woods, Nashville, Indiana, USA (39°14'54''N, –86°13'05''W). Column heading descriptions as follows: "TAG": individual identifier, "PLOT": the plot to which that individual belongs, "Endo": whether plant was endophyte-symbiotic (1) or endophyte-free (0), "Year1": the beginning year of the transition period, "Age1": age of individual at year 1, "Size1": size of individual at year 1 (number of tillers), "Seeds1": projected amount of seed production at year1, "Survto2": whether that individual survives to the next year, "Size2": if it survives, the size of the individual at the next year.
DOI: 10.5061/dryad.nf515/2
title: Poa sylvestris demographic transitions

description: Survival, growth, and reproduction of Poa sylvestris individuals in experimental plots 2008-2011. Populations established at the Indiana University Research and Teaching Preserve at Lilly Dickey Woods, Nashville, Indiana, USA (39°14'54''N, –86°13'05''W). Column heading descriptions as follows: "TAG": individual identifier, "PLOT": the plot to which that individual belongs, "Endo": whether plant was endophyte-symbiotic (1) or endophyte-free (0), "Year1": the beginning year of the transition period, "Age1": age of individual at year 1, "Size1": size of individual at year 1 (number of tillers), "Seeds1": projected amount of seed production at year1, "Survto2": whether that individual survives to the next year, "Size2": if it survives, the size of the individual at the next year.
DOI: 10.5061/dryad.nf515/3
title: Poa alsodes seedling establishment

description: Seedling establishment rates of Poa alsodes at the plot level 2008-2011. Column headings as follows: "Plot": plot identifier, "Endo": whether plants in that plot were endophyte-symbiotic (1) or endophyte-free (0), "Year1": beginning year of transition, "Seeds1": total number of seeds produced by plants in that plot , "Recruits2": total number of new recruits to that plot the next year, "P.est": rate of seedling establishment (=Recruits2/Seeds1).
DOI: 10.5061/dryad.nf515/4
title: Poa sylvestris seedling establishment

description: Seedling establishment rates of Poa sylvestris at the plot level 2008-2011. Column headings as follows: "Plot": plot identifier, "Endo": whether plants in that plot were endophyte-symbiotic (1) or endophyte-free (0), "Year1": beginning year of transition, "Seeds1": total number of seeds produced by plants in that plot , "Recruits2": total number of new recruits to that plot the next year, "P.est": rate of seedling establishment (=Recruits2/Seeds1).
DOI: 10.5061/dryad.nf515/5
title: Growth and survival of Poa alsodes new recruits

description: Growth and survival of Poa alsodes new recruits in their first year. Column headings are as follows: "TAG": seedling identifier, "PLOT": plot into which seedling recruited, "Endo": the endophyte status of that plot, "Year1": the year seedling first recorded, "Size1": size (number of tillers) of seedling, "Seeds1": reproduction of seedling at first year, "Survto2": seedling survival into the next year, "Size2": if it survived, seedling size in the next year.
DOI: 10.5061/dryad.nf515/6
title: Growth and survival of Poa sylvestris new recruits

description: Growth and survival of Poa sylvestris new recruits in their first year. Column headings are as follows: "TAG": seedling identifier, "PLOT": plot into which seedling recruited, "Endo": the endophyte status of that plot, "Year1": the year seedling first recorded, "Size1": size (number of tillers) of seedling, "Seeds1": reproduction of seedling at first year, "Survto2": seedling survival into the next year, "Size2": if it survived, seedling size in the next year.
DOI: 10.5061/dryad.nf515/7
title: IPM and LTRE code

description: R code to parameterize integral projection models for each species with transitions between endophyte statuses based on transmission rates. Between-species LTRE modeled to compare the contributions of intrinsic demographic rates and effects of endophyte symbiosis towards the observed difference in population growth.
DOI: 10.5061/dryad.p5hd0/21
title: Ts_295g

description: Geneland genotype input for cell 295.
DOI: 10.5061/dryad.p5hd0/22
title: Ts_295xy

description: Geneland coordinate input for cell 295.
DOI: 10.5061/dryad.p5hd0/23
title: Ts_295L

description: Geneland ID file input for cell 295.
DOI: 10.5061/dryad.p5hd0/24
title: Ts_allfst1-fst

description: Fst/1-Fst between 33 study cells.
DOI: 10.5061/dryad.p5hd0/25
title: Ts_allgeo

description: Euclidean distances between 33 study cells in meters.
DOI: 10.5061/dryad.p5hd0/26
title: Ts_allgenotypesandcoord_use

description: Genalex genotype file and spatial coordinates for entire Tamias striatus dataset. Genotypes are separated by study cell.
DOI: 10.5061/dryad.p5hd0/27
title: Anderson_PloSOneCode copy

description: R code for regression and validation analyses.
DOI: 10.5061/dryad.tj57h/3
title: Pure Species Offspring Count

description: This file contains data from the paper entitled "Asymmetrical sexual isolation but no postmating isolation between the closely related species Drosophila suboccidentalis and Drosophila occidentalis".  This specific file contains data detailing pure species female and hybrid individual female progeny production (Figure 4 from the paper).  Each row represents a single pair of flies.  These flies were mated and the number resulting adult offspring produced was tallied in the column titled "Progeny_Count".  The "Female_Species" column indicates the species of female in each pairing.  The "Male_Species" column indicates  the species of male in each pairing.  "Suboccidentalis" refers to a pure species Drosophila suboccidentalis individual.  "Occidentalis" refers to a pure species Drosophila occidentalis individual.
DOI: 10.5061/dryad.tj57h/4
title: Pure Species and Hybrid Male Fertility

description: This file contains data from the paper entitled "Asymmetrical sexual isolation but no postmating isolation between the closely related species Drosophila suboccidentalis and Drosophila occidentalis". This specific file contains data detailing pure species and hybrid individual female egg production (Figure 5 from the paper). Each row represents a set containing a single male fly and three female flies. These flies were mated and the number of progeny produced was tallied in the column titled "Progeny_Count". The "Female_Type" column indicates whether the female flies in each set was a pure species individual or a hybrid individual. The "Male_Type" column indicates whether the male fly in each set was a pure species individual or a hybrid individual. "Suboccidentalis" refers to a pure species Drosophila suboccidentalis individual. "Occidentalis" refers to a pure species Drosophila occidentalis individual. "Hybrid(OxS)" refers to a hybrid individual generated by crossing a Drosophila occidentalis female to a Drosophila suboccidentalis male. "Hybrid(SxO)" refers to a hybrid individual generated by crossing a Drosophila suboccidentalis female to a Drosophila occidentalis male.
DOI: 10.5061/dryad.tj57h/5
title: Pure Species Latency to Mate

description: This file contains data from the paper entitled "Asymmetrical sexual isolation but no postmating isolation between the closely related species Drosophila suboccidentalis and Drosophila occidentalis". This specific file contains data detailing the latency to copulation between pure species individuals (Supplemental Figure 2). Each row represents a single pair of flies involved in a no-choice mate trial that successfully copulated within the allotted time frame.  The latency to copulation (measured in minutes) for each pair is recorded in the column titled "Latency".  The "Female_Species" column indicates  the species of female in each pairing.  The "Male_Species" column indicates the species of male in each pairing.  "Suboccidentalis" refers to a pure Drosophila suboccidentalis individual.  "Occidentalis" refers to a pure Drosophila occidentalis individual.
DOI: 10.5061/dryad.tj57h/6
title: Hybrid Individual Mating Latency

description: This file contains data from the paper entitled "Asymmetrical sexual isolation but no postmating isolation between the closely related species Drosophila suboccidentalis and Drosophila occidentalis". This specific file contains data detailing the latency to copulation between pure species individuals (Supplemental Figure 3). Each row represents a single pair of flies involved in a no-choice mate trial that successfully copulated within the allotted time frame.  The latency to copulation (measured in minutes) for each pair is recorded in the column titled "Latency".  The "Female_Type" column indicates whether the female fly in each pairing was a pure species individual or a hybrid individual. The "Male_Type" column indicates whether the male fly in each pairing was a pure species individual or a hybrid individual. "Suboccidentalis" refers to a pure species Drosophila suboccidentalis individual. "Occidentalis" refers to a pure species Drosophila occidentalis individual. "Hybrid(OxS)" refers to a hybrid individual generated by crossing a Drosophila occidentalis female to a Drosophila suboccidentalis male. "Hybrid(SxO)" refers to a hybrid individual generated by crossing a Drosophila suboccidentalis female to a Drosophila occidentalis male.
DOI: 10.5061/dryad.tj57h/7
title: Hybrid Mating Rates

description: This file contains data from the paper entitled "Asymmetrical sexual isolation but no postmating isolation between the closely related species Drosophila suboccidentalis and Drosophila occidentalis". This specific file contains data detailing mating rates between hybrid and pure species individuals (Figure 2 from the paper). Each row represents a single pair of flies that were involved in a no-choice mate trial. A "1" in the "Mated(1=Yes)" column represents a pair of flies that successfully copulated within the allotted time frame. A "0" in this column indicated that the pair failed to copulate. The "Female_Type" column indicates whether the female fly in each pairing was a pure species individual or a hybrid individual. The "Male_Type" column indicates whether the male fly in each pairing was a pure species individual or a hybrid individual. "Suboccidentalis" refers to a pure species Drosophila suboccidentalis individual. "Occidentalis" refers to a pure species Drosophila occidentalis individual. "Hybrid(OxS)" refers to a hybrid individual generated by crossing a Drosophila occidentalis female to a Drosophila suboccidentalis male. "Hybrid(SxO)" refers to a hybrid individual generated by crossing a Drosophila suboccidentalis female to a Drosophila occidentalis male.
DOI: 10.5061/dryad.033ds/13
title: Stable_Isotopes

description: δ15N, δ13C, and N concentration values for plants and fungi from four sites.
DOI: 10.5061/dryad.331jq/1
title: Alignments, MrBayes blocks and XML files

description: Contains nexus alignments for each of the genes of the 10-gene dataset, as well as a concatenated  file with associated MrBayes blocks. Also contains .xml files for BEAST and *BEAST analyses of the 10-gene and 44-gene datasets.
DOI: 10.5061/dryad.33m48/1
title: cary_dryad.tar
DOI: 10.5061/dryad.3f863/1
title: ConfusionData

description: Raw data from visual search experiment described in Scott-Samuel et al. (2015) doi 10.1007/s00265-015-1885-1
DOI: 10.5061/dryad.3f863/2
title: SubjectAgeAndGender

description: Participant age and gender information, relating to raw data in ConfusionData.txt
DOI: 10.5061/dryad.738bp/1
title: Data_Fabian et al_JEB

description: We measured viability (measured as egg-to-adult survival proportion), thorax length (measured in mm), fecundity (average number of eggs laid during days 1-5, days 6-10 and days 1-10) and lifespan of isofemale lines from several African D. melanogaster populations.
DOI: 10.5061/dryad.88b12/1
title: genotypic-data

description: Genotypes and spatial coordinates of the 377 P. giornae individuals sampled
DOI: 10.5061/dryad.88b12/2
title: Pezotettix giornae Microsatellite Sequences

description: Raw reads from the GS-FLX Roche sequencing corresponding to the 11 microsatelittes isolated
DOI: 10.5061/dryad.88b12/3
title: Abundance-data
DOI: 10.5061/dryad.88h07/1
title: Corridors Model

description: R script to run agent-based model from Habitat Corridors manuscript.
DOI: 10.5061/dryad.9d030/1
title: Reads of sRNAs in the four categories in the 104 libraries classified according to genome mapping to the SNP-replaced reference genomes of the parents.

description: Reads of sRNAs in the four categories in the 104 libraries classified according to genome mapping to the SNP-replaced reference genomes of the parents.
DOI: 10.5061/dryad.9d030/2
title: Supplementary file 3

description: The identified s-traits.
DOI: 10.5061/dryad.9d030/3
title: Supplementary file 4

description: The definition of sRNA clusters.
DOI: 10.5061/dryad.9d030/4
title: Supplementary file 5

description: A summary of the mRNA sequencing data.
DOI: 10.5061/dryad.9d030/5
title: Supplementary file 6

description: The genotype of the IMF2 population.
DOI: 10.5061/dryad.9d030/8
title: Supplementary file 9

description: Information of sRNA biogenesis genes.
DOI: 10.5061/dryad.9sj18/1
title: Resident community structure and invader abundance
DOI: 10.5061/dryad.kr3hf/1
title: Smelt AFLP data - Dodson et al. 2015 (PlosONE)

description: This file contains AFLP genotypes (29 loci) for 447 Rainbow smelt (Osmerus mordax). One sheet contains the data, one sheet establishes the correspondence between Site numbers in the publication (Table 2 and Figure 2) and codes used for indiividual genotypes.
DOI: 10.5061/dryad.kr3hf/2
title: DodsonAl_PlosONE15_MorphoData

description: This files contains morphological data. One sheet contains the data itself, one sheet establishes the correspondence between sampling sites in Figure 1 and Table 1 with the codes used in the datasheet; one sheet details the meaning of trait variables. These traits are also presented in the DodsonAl_PlosONE15_DescriptionVariables.pdf file
DOI: 10.5061/dryad.qf53d/1
title: FCA genotype dataset

description: 662 individuals genotyped at 20 microsatellite loci - FCA file
DOI: 10.5061/dryad.qf53d/2
title: Geneland genotype data file

description: Geneland genotype data file
DOI: 10.5061/dryad.qf53d/3
title: Geneland Coordinate data file

description: Geneland Coordinate data file
DOI: 10.5061/dryad.qf53d/4
title: Genotype complete

description: 662 individuals - 20 microsatellte loci
DOI: 10.5061/dryad.qf53d/5
title: Dryad data_all sequence haplotypes

description: All sequenced individuals in which sequences lacked heteroplasmy.
DOI: 10.5061/dryad.s2405/1
title: Raw files

description: Raw files.rar contains the following files: 1) perch_pddRAD_map5_out.ace; 2) pop1_lttrim_filt_trimmed_seq_split_V2.fastq; 3) pop2_lttrim_filt_trimmed_seq_split_V2.fastq. Pop1 and pop2 stands for Baltic Sea and Lake Peipus pool, respectively.
DOI: 10.5061/dryad.s2405/2
title: PythonCodes

description: PythonCodes.zip - custom Python scripts used in the study.