cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21840501.v1
title: Supplementary Material for: A tunable calcium phosphate coating to drive in vivo osseointegration of composite engineered tissues

description: Varying degrees of hydroxyapatite (HA) surface functionalization have been implicated as the primary driver of differential osteogenesis observed in infiltrating cells. The ability to reliably create spatially-controlled areas of mineralization in composite engineered tissues is of growing interest in the field, and the use of HA-functionalized biomaterials may provide a robust solution to this challenge. In this study, we successfully fabricated polycaprolactone (PCL) salt-leached scaffolds with two levels of a biomimetic calcium phosphate coating to examine their effects on MSC osteogenesis. Longer duration coating in simulated body fluid (SBF) led to increased HA crystal nucleation within scaffold interiors as well as more robust HA crystal formation on scaffold surfaces. Ultimately, the increased surface stiffness of scaffolds coated in SBF for 7 days in comparison to scaffolds coated in SBF for 1 day led to more robust osteogenesis of MSCs in vitro without the assistance of osteogenic signaling molecules. This study also demonstrated that the use of SBF-based HA coatings can promote higher levels of osteogenesis in vivo. Finally, when incorporated as the endplate region of a larger tissue-engineered intervertebral disc replacement, HA-coating did not induce mineralization in or promote cell migration out of neighboring biomaterials. Overall, these results verified tunable biomimetic HA coatings as a promising biomaterial modification to promote discrete regions of mineralization within composite engineered tissues.
DOI: 10.5281/zenodo.7766551
title: Mapped ATAC-seq data for mock and HSV-1 strain 17 infection and infection with null mutants of HSV-1

description: Sample annotation: Mock_1 mock infection, replicate 1 Mock_2 mock infection, replicate 2 WT_1 HSV-1 wt, strain 17, replicate 1 WT_2 HSV-1 wt, strain 17, replicate 2 WT_plus_PAA_1 HSV-1 wt, strain 17, +PAA, replicate 1 WT_plus_PAA_2 HSV-1 wt, strain 17, +PAA, replicate 2 dICP0_1 HSV-1 lacking expression of ICP0, replicate 1 dICP0_2 HSV-1 lacking expression of ICP0, replicate 2 dICP22_1 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, replicate 1 dICP22_2 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, replicate 2 dICP22_3 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, replicate 3 dICP22_4 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, replicate 4 dICP22_plus_PAA_1 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, +PAA, replicate 1 dICP22_plus_PAA_2 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, +PAA, replicate 2 dICP27_1 HSV-1 lacking expression of ICP27, KOS, replicate 1 dICP27_2 HSV-1 lacking expression of ICP27, KOS, replicate 2 dVHS_1 HSV-1 lacking expression of UL41, replicate 1 dVHS_2 HSV-1 lacking expression of UL41, replicate 2
DOI: 10.5281/zenodo.7766550
title: Mapped ATAC-seq data for mock and HSV-1 strain 17 infection and infection with null mutants of HSV-1

description: Sample annotation: Mock_1 mock infection, replicate 1 Mock_2 mock infection, replicate 2 WT_1 HSV-1 wt, strain 17, replicate 1 WT_2 HSV-1 wt, strain 17, replicate 2 WT_plus_PAA_1 HSV-1 wt, strain 17, +PAA, replicate 1 WT_plus_PAA_2 HSV-1 wt, strain 17, +PAA, replicate 2 dICP0_1 HSV-1 lacking expression of ICP0, replicate 1 dICP0_2 HSV-1 lacking expression of ICP0, replicate 2 dICP22_1 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, replicate 1 dICP22_2 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, replicate 2 dICP22_3 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, replicate 3 dICP22_4 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, replicate 4 dICP22_plus_PAA_1 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, +PAA, replicate 1 dICP22_plus_PAA_2 HSV-1 lacking expression of ICP22, HSV-1 strain F mutant R325, +PAA, replicate 2 dICP27_1 HSV-1 lacking expression of ICP27, KOS, replicate 1 dICP27_2 HSV-1 lacking expression of ICP27, KOS, replicate 2 dVHS_1 HSV-1 lacking expression of UL41, replicate 1 dVHS_2 HSV-1 lacking expression of UL41, replicate 2
DOI: 10.12751/g-node.ejk8kx
title: Dataset - Marmoset and mouse retinal ganglion cell responses to natural stimuli and supporting data

description: Dataset accompanying the manuscript by Karamanlis et al. 2023: Natural stimuli drive concerted nonlinear responses in populations of retinal ganglion cells.
description: IsSupplementTo: Karamanlis D, Khani MH, Schreyer HM, Zapp SJ, Mietsch M, Gollisch T (2023), Natural stimuli drive concerted nonlinear responses in populations of retinal ganglion cells.
DOI: 10.6084/m9.figshare.21938570
title: Original data

description: Original satellite observation data
DOI: 10.6084/m9.figshare.21938570.v3
title: Original data

description: Original satellite observation data
DOI: 10.5281/zenodo.7766534
title: Multi-scale full waveform inversion based on a convolutional neural network

description: The research data from this paper are uploaded here and are available for download.
DOI: 10.5281/zenodo.7766533
title: Multi-scale full waveform inversion based on a convolutional neural network

description: The research data from this paper are uploaded here and are available for download.
DOI: 10.5281/zenodo.7682201
title: SMFS of the heterodimeric 6-heptad coiled coil A6B6 (shear geometry with Cys-A6 and B6-Cys)

description: This library contains the atomic force microscope (AFM)-based single-molecule force spectroscopy (SMFS) data for the <strong>coiled coil A6B6</strong>, measured in shear loading geometry. The dataset includes all measured force-extension curves without preselection for single rupture events (three independent experiments). The measured heterodimeric coiled coil has the following sequence: <strong>A6</strong>: CGG EIAALEQ EIAALEK ENAALEW EIAALEQ ENAALEK EIAALEQ GG / <strong>B6</strong>: GG KIAALKQ KIAALKY KNAALKK KIAALKQ KNAALKK KIAALKQ GGC See readme file for details.
DOI: 10.5281/zenodo.7682200
title: SMFS of the heterodimeric 6-heptad coiled coil A6B6 (shear geometry with Cys-A6 and B6-Cys)

description: This library contains the atomic force microscope (AFM)-based single-molecule force spectroscopy (SMFS) data for the <strong>coiled coil A6B6</strong>, measured in shear loading geometry. The dataset includes all measured force-extension curves without preselection for single rupture events (three independent experiments). The measured heterodimeric coiled coil has the following sequence: <strong>A6</strong>: CGG EIAALEQ EIAALEK ENAALEW EIAALEQ ENAALEK EIAALEQ GG / <strong>B6</strong>: GG KIAALKQ KIAALKY KNAALKK KIAALKQ KNAALKK KIAALKQ GGC See readme file for details.
DOI: 10.34943/d9ea8550-ef67-4b50-83ab-61d8ed363314
title: Port aux Basques Wind Monitoring System Deployed 2023-03-03

description: The WindSonic SN 14520032 was deployed on 2023-03-03 at Port aux Basques. Port aux Basque is located on the southwestern end of Newfoundland near the Cabot Strait. This device is a Wind Monitoring System. Wind monitoring systems measure the speed and direction of wind. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/5ef2d728-2a98-4ab4-8e4c-19540fa513e8
title: Port aux Basques Wind Monitoring System Deployed 2023-03-03

description: The RM Young Wind Monitor 5106 SN136241 was deployed on 2023-03-03 at Port aux Basques. Port aux Basque is located on the southwestern end of Newfoundland near the Cabot Strait. This device is a Wind Monitoring System. Wind monitoring systems measure the speed and direction of wind. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34740/kaggle/dsv/5226667
title: YouTube Daily
DOI: 10.5281/zenodo.7762337
title: Dataset for "Fluorescence of solvent-extractable organics in sub-micrometer forest aerosols in Hokkaido, Japan, Atmos. Environ."

description: This dataset is for “Fluorescence of solvent-extractable organics in sub-micrometer forest aerosols in Hokkaido, Japan” by Afsana et al. in Atmospheric Environment. The contents are described in the sheet “readme” of the Excel file named “Dataset_sonia2023323.xlsx”. The excitation–emission matrix (EEM) spectra of OA extracts in solutions were measured using a fluorescence spectrophotometer (FP-6600, JASCO) using a 1-cm path length quartz cell. The ranges of the excitation and emission wavelengths were 220–500 nm and 250–650 nm, respectively. drEEM toolbox (version 0.2.0) for MATLAB (http://www.models.life.ku.dk/dreem) was used to preprocess the EEMs and to perform parallel factor (PARAFAC) analysis. The details of the analysis of the mass concentrations and the ion groups of OA extracts were reported in Afsana et al. (2022). The details of the analysis of the mass concentrations of biogenic molecular tracers were reported in Müller et al. (2017). The dataset was obtained under the support by JSPS KAKENHI Grant Numbers JP19H04253 and JP25281002. Afsana, S., Zhou, R., Miyazaki, Y., Tachibana, E., Deshmukh, D. K., Kawamura, K., and Mochida, M.: Fluorescence of solvent-extractable organics in sub-micrometer forest aerosols in Hokkaido, Japan, Atmos. Environ. Afsana, S., Zhou, R., Miyazaki, Y., Tachibana, E., Deshmukh, D. K., Kawamura, K., and Mochida, M.: Abundance, chemical structure, and light absorption properties of humic-like substances (HULIS) and other organic fractions of forest aerosols in Hokkaido, Sci. Rep., 12, 14379, 2022. Müller, A., Miyazaki, Y., Tachibana, E., Kawamura. K., and Hiura, T.: Evidence of a reduction in cloud condensation nuclei activity of water-soluble aerosols caused by biogenic emissions in a cool-temperate forest, Sci. Rep., 7, 1−9, 2017.
DOI: 10.5281/zenodo.7762336
title: Dataset for "Fluorescence of solvent-extractable organics in sub-micrometer forest aerosols in Hokkaido, Japan, Atmos. Environ."

description: This dataset is for “Fluorescence of solvent-extractable organics in sub-micrometer forest aerosols in Hokkaido, Japan” by Afsana et al. in Atmospheric Environment. The contents are described in the sheet “readme” of the Excel file named “Dataset_sonia2023323.xlsx”. The excitation–emission matrix (EEM) spectra of OA extracts in solutions were measured using a fluorescence spectrophotometer (FP-6600, JASCO) using a 1-cm path length quartz cell. The ranges of the excitation and emission wavelengths were 220–500 nm and 250–650 nm, respectively. drEEM toolbox (version 0.2.0) for MATLAB (http://www.models.life.ku.dk/dreem) was used to preprocess the EEMs and to perform parallel factor (PARAFAC) analysis. The details of the analysis of the mass concentrations and the ion groups of OA extracts were reported in Afsana et al. (2022). The details of the analysis of the mass concentrations of biogenic molecular tracers were reported in Müller et al. (2017). The dataset was obtained under the support by JSPS KAKENHI Grant Numbers JP19H04253 and JP25281002. Afsana, S., Zhou, R., Miyazaki, Y., Tachibana, E., Deshmukh, D. K., Kawamura, K., and Mochida, M.: Fluorescence of solvent-extractable organics in sub-micrometer forest aerosols in Hokkaido, Japan, Atmos. Environ. Afsana, S., Zhou, R., Miyazaki, Y., Tachibana, E., Deshmukh, D. K., Kawamura, K., and Mochida, M.: Abundance, chemical structure, and light absorption properties of humic-like substances (HULIS) and other organic fractions of forest aerosols in Hokkaido, Sci. Rep., 12, 14379, 2022. Müller, A., Miyazaki, Y., Tachibana, E., Kawamura. K., and Hiura, T.: Evidence of a reduction in cloud condensation nuclei activity of water-soluble aerosols caused by biogenic emissions in a cool-temperate forest, Sci. Rep., 7, 1−9, 2017.
DOI: 10.6084/m9.figshare.22302808
title: Calculation of the model.xlsx

description: This is a calculation file for the study conducted on the topic: Digital transformation of socioeconomic development by the quality of life vision
DOI: 10.6084/m9.figshare.22331650
title: Linearity Data of Posaconazole HPLC estimation

description: Linearity Data
DOI: 10.5281/zenodo.7510910
title: Dataset for visualizing the atomic-scale origin of metallic behavior in Kondo insulators

description: This dataset contains the raw data files and analysis steps used to produce the figures in the manuscript "Visualizing the atomic-scale origin of metallic behavior in Kondo insulators" Science 379, 1214–1218 (2023)
description: This project was supported by the Gordon and Betty Moore Foundation's EPiQS Initiative through grants GBMF4536, GBMF9071, and GBMF9457. The experiments at Harvard were supported by the US National Science Foundation grant DMR-1410480. The data interpretation received support from AFOSR grant FA9550-21-1-0429. The work of E.M. and D.K.M. was supported by the US Department of Energy, Office of Science, Basic Energy Sciences, under Award DE-FG02-05ER46225. C.E.M. is supported by the Swiss National Science Foundation under fellowship P400P2_183890. Work at the University of Maryland was supported by AFOSR FA9550-22-1-0023. Research at McMaster University was supported by the Natural Sciences and Engineering Research Council. J.C.S.D. acknowledges support from the Science Foundation of Ireland under Award SFI 17/RP/5445, and from the European Research Council under Award DLV-788932. This project received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement 893097.
DOI: 10.5281/zenodo.7510909
title: Dataset for visualizing the atomic-scale origin of metallic behavior in Kondo insulators

description: This dataset contains the raw data files and analysis steps used to produce the figures in the manuscript "Visualizing the atomic-scale origin of metallic behavior in Kondo insulators" Science 379, 1214–1218 (2023)
description: This project was supported by the Gordon and Betty Moore Foundation's EPiQS Initiative through grants GBMF4536, GBMF9071, and GBMF9457. The experiments at Harvard were supported by the US National Science Foundation grant DMR-1410480. The data interpretation received support from AFOSR grant FA9550-21-1-0429. The work of E.M. and D.K.M. was supported by the US Department of Energy, Office of Science, Basic Energy Sciences, under Award DE-FG02-05ER46225. C.E.M. is supported by the Swiss National Science Foundation under fellowship P400P2_183890. Work at the University of Maryland was supported by AFOSR FA9550-22-1-0023. Research at McMaster University was supported by the Natural Sciences and Engineering Research Council. J.C.S.D. acknowledges support from the Science Foundation of Ireland under Award SFI 17/RP/5445, and from the European Research Council under Award DLV-788932. This project received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement 893097.
DOI: 10.6084/m9.figshare.20069408
title: Uncertainty in US forest carbon storage potential due to climate risks

description: <strong>US forest C storage potential - Wu et al. (2023) code to reproduce the results.</strong> Contact Chao Wu (chaowu.thu@gmail.com) with questions. Both the R codes and Python codes were included. Citation: Wu C, Coffield SR, Goulden ML, Randerson JT, Trugman, AT, Anderegg WRL (2023) Uncertainty in US forest carbon storage potential due to climate risks. <em>Nature Geoscience</em>. doi<strong>:</strong> 10.1038/s41561-023-01166-7 The data include (i) all raw data generated in this paper; (ii) the code for figures 1-4 in the main text; and (iii) the code for the climate niche model. Detailed information: (1) source code 1. FutureUSforestC_manuscript_published_mainFigures2.R: the code for generating figures in the main text. 2. RF_carbon_models.py: the source code for building the climate niche model. 3. RF_forestgroups_models.py: the source code for building the tree species niche model. (2) raw data 1. cmip6_post/: results from the 22 CMIP6 ESMs. 2. em_results/: results from the climate niche model. 3. semi_empirical_fiaregression_esm/: results from the growth-mortality model. 4. sourceData/: Source data for figures 1-4 in the main text and 4 Extended Data figures. 5. figure/: generated figures using the code above. 6. cb_2018_us_state_500k/: US boundary shapefile. 7. other dependent data used in the code above, more details can be found in the code. <br> <br>
DOI: 10.6084/m9.figshare.20069408.v1
title: Uncertainty in US forest carbon storage potential due to climate risks

description: <strong>US forest C storage potential - Wu et al. (2023) code to reproduce the results.</strong> Contact Chao Wu (chaowu.thu@gmail.com) with questions. Both the R codes and Python codes were included. Citation: Wu C, Coffield SR, Goulden ML, Randerson JT, Trugman, AT, Anderegg WRL (2023) Uncertainty in US forest carbon storage potential due to climate risks. <em>Nature Geoscience</em>. doi<strong>:</strong> 10.1038/s41561-023-01166-7 The data include (i) all raw data generated in this paper; (ii) the code for figures 1-4 in the main text; and (iii) the code for the climate niche model. Detailed information: (1) source code 1. FutureUSforestC_manuscript_published_mainFigures2.R: the code for generating figures in the main text. 2. RF_carbon_models.py: the source code for building the climate niche model. 3. RF_forestgroups_models.py: the source code for building the tree species niche model. (2) raw data 1. cmip6_post/: results from the 22 CMIP6 ESMs. 2. em_results/: results from the climate niche model. 3. semi_empirical_fiaregression_esm/: results from the growth-mortality model. 4. sourceData/: Source data for figures 1-4 in the main text and 4 Extended Data figures. 5. figure/: generated figures using the code above. 6. cb_2018_us_state_500k/: US boundary shapefile. 7. other dependent data used in the code above, more details can be found in the code. <br> <br>
DOI: 10.34943/b169fbab-3287-44f0-b5d6-a27cb2d6b1a0
title: Strait of Georgia Central Hydrophone Deployed 2023-03-17

description: The Ocean Sonics icListen HF Hydrophone 1353 was deployed on 2023-03-17 at Strait of Georgia Central. Strait of Georgia Central is a central area in the Strait of Georgia. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/bd84be0d-c4fa-415a-b69b-aa5d04198ca7
title: Port aux Basques Barometric Pressure Sensor Deployed 2023-03-03

description: The Vaisala PTB110 Barometer H0120006 was deployed on 2023-03-03 at Port aux Basques. Port aux Basque is located on the southwestern end of Newfoundland near the Cabot Strait. This device is a Barometric Pressure Sensor. Barometric pressure sensors are used to monitor weather fluctuations and conditions above the surface of the water. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/bb477fe2-150a-4433-a832-0c3533266529
title: Port aux Basques Wave Buoy Deployed 2023-03-03

description: The TRIAXYS Wave Buoy TAS04501 was deployed on 2023-03-03 at Port aux Basques. Port aux Basque is located on the southwestern end of Newfoundland near the Cabot Strait. This device is a Wave Buoy. Wave buoys provide measurements of wave conditions. Measurements include wave height, period, direction, and spread. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/97285d7a-cf24-46fc-afd4-ca88d66ef880
title: Port aux Basques Datalogger Deployed 2023-03-03

description: The AXYS WatchMan Data Logger WM503480 was deployed on 2023-03-03 at Port aux Basques. Port aux Basque is located on the southwestern end of Newfoundland near the Cabot Strait. This device is a Datalogger. Data loggers, or recorder devices, are electronic devices that record data over time, or in relation to location, either with a built-in instrument or sensor or via external instruments and sensors, and are programmed with appropriate recording parameters. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/0f343240-180a-442f-a49b-fd1c571c6e63
title: Port aux Basques Navigation System Deployed 2023-03-03

description: The Garmin GP30 for Port Aux Basque was deployed on 2023-03-03 at Port aux Basques. Port aux Basque is located on the southwestern end of Newfoundland near the Cabot Strait. This device is a Navigation System. Navigational instruments are used to measure and record positional information of ships, buoys, and autonomous underwater vehicles (AUVs). Typical sensors include latitude, longitude, speed, heading, pitch, roll, and depth. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/450c8ea5-4755-4090-b1a4-bdfdfe14f3de
title: Port aux Basques Air Temperature and Humidity Sensor Deployed 2023-03-03

description: The Rotronic Meteorological Probe MP101A-T7 61464758 was deployed on 2023-03-03 at Port aux Basques. Port aux Basque is located on the southwestern end of Newfoundland near the Cabot Strait. This device is a Air Temperature and Humidity Sensor. Air temperature and humidity sensors are used to monitor weather conditions above the surface of the water. Air temperature affects wind speed and direction, relative humidity, the rate of evaporation and precipitation in the atmosphere. Air temperature is measured in numerous ways including thermistors, thermocouples and mercury thermometers. Humidity is the amount of water vapour in the air and can indicate precipitation, dew or fog. Humidity is typically measured as absolute humidity (the water content of air), relative humidity (measures the current absolute humidity relative to maximum for that temperature), or specific humidity (as a ratio of water vapour content to the total air content based on a mass). It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.22331697
title: detective duo of apatite and zircon geochronology for East Avalonia, Johnston Complex, Wales

description: Appendix 2 - Apatite U-Pb and Trace Elements.
DOI: 10.6084/m9.figshare.22331697.v1
title: detective duo of apatite and zircon geochronology for East Avalonia, Johnston Complex, Wales

description: Appendix 2 - Apatite U-Pb and Trace Elements.
DOI: 10.6084/m9.figshare.22331700
title: detective duo of apatite and zircon geochronology for East Avalonia, Johnston Complex, Wales

description: Appendix 1 - Zircon U-Pb, Lu-Hf, Trace Elements.