cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive117440.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/atz96d
title: slice02427.tif

description: :unav
DOI: 10.57745/hbpwxx
title: slice00836.tif

description: :unav
DOI: 10.57745/hcs71i
title: slice01249.tif

description: :unav
DOI: 10.13145/bacdive117441.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/nkbsse
title: slice00201.tif

description: :unav
DOI: 10.57745/xebs6v
title: slice02424.tif

description: :unav
DOI: 10.57745/ehb3l6
title: slice02329.tif

description: :unav
DOI: 10.57745/gofcxt
title: slice00210.tif

description: :unav
DOI: 10.57745/st66nx
title: slice01826.tif

description: :unav
DOI: 10.13145/bacdive117442.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/5eggza
title: slice00681.tif

description: :unav
DOI: 10.57745/jwjqvd
title: slice01066.tif

description: :unav
DOI: 10.57745/vha1td
title: slice02047.tif

description: :unav
DOI: 10.57745/zmogjn
title: slice01562.tif

description: :unav
DOI: 10.13145/bacdive117443.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/cihxp8
title: slice01613.tif

description: :unav
DOI: 10.57745/mymihm
title: slice02023.tif

description: :unav
DOI: 10.57745/sv45xm
title: slice00932.tif

description: :unav
DOI: 10.13145/bacdive117444.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/3sxa7w
title: slice02445.tif

description: :unav
DOI: 10.57745/brcfd8
title: slice01105.tif

description: :unav
DOI: 10.57745/g0midp
title: slice00079.tif

description: :unav
DOI: 10.57745/andtfl
title: slice02100.tif

description: :unav
DOI: 10.57745/s3ozu0
title: slice00998.tif

description: :unav
DOI: 10.13145/bacdive117445.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/gsrmm8
title: slice00991.tif

description: :unav
DOI: 10.57745/odnvwh
title: slice02064.tif

description: :unav
DOI: 10.57745/omtrzf
title: slice01898.tif

description: :unav
DOI: 10.57745/p9bilh
title: slice00155.tif

description: :unav
DOI: 10.13145/bacdive117446.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/1r5flc
title: slice02290.tif

description: :unav
DOI: 10.57745/m2727k
title: slice00790.tif

description: :unav
DOI: 10.57745/ux6v00
title: slice01855.tif

description: :unav
DOI: 10.13145/bacdive117447.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/bavlvt
title: slice02082.tif

description: :unav
DOI: 10.57745/d1tcbc
title: slice01972.tif

description: :unav
DOI: 10.57745/thmjm5
title: slice00794.tif

description: :unav
DOI: 10.57745/1eznbg
title: slice02117.tif

description: :unav
DOI: 10.57745/gab6m3
title: slice01966.tif

description: :unav
DOI: 10.57745/kky0gb
title: slice00443.tif

description: :unav
DOI: 10.13145/bacdive117448.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/jyjj06
title: slice01520.tif

description: :unav
DOI: 10.57745/quduna
title: slice02359.tif

description: :unav
DOI: 10.57745/v8cmbq
title: slice00654.tif

description: :unav
DOI: 10.13145/bacdive117449.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/hukoka
title: slice00258.tif

description: :unav
DOI: 10.57745/mlwdqs
title: slice01883.tif

description: :unav
DOI: 10.57745/omasnj
title: slice02485.tif

description: :unav
DOI: 10.13145/bacdive117450.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/52mp7z
title: slice00742.tif

description: :unav
DOI: 10.57745/97ur5q
title: slice02025.tif

description: :unav
DOI: 10.57745/hmv58b
title: slice01960.tif

description: :unav
DOI: 10.57745/chx9ib
title: slice00466.tif

description: :unav
DOI: 10.57745/nvwntb
title: slice02471.tif

description: :unav
DOI: 10.57745/zfbbnq
title: slice01768.tif

description: :unav
DOI: 10.13145/bacdive117451.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/dwnltj
title: slice02262.tif

description: :unav
DOI: 10.57745/ofjgbm
title: slice01963.tif

description: :unav
DOI: 10.57745/x3b4hc
title: slice00465.tif

description: :unav
DOI: 10.13145/bacdive117452.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/ejbozs
title: slice02266.tif

description: :unav
DOI: 10.57745/fnd2c0
title: slice01181.tif

description: :unav
DOI: 10.57745/tzlme8
title: slice00361.tif

description: :unav
DOI: 10.13145/bacdive117453.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/pwxkku
title: slice02076.tif

description: :unav
DOI: 10.57745/qrk0at
title: slice01650.tif

description: :unav
DOI: 10.57745/t3rfd3
title: slice00177.tif

description: :unav
DOI: 10.57745/ira7th
title: slice02489.tif

description: :unav
DOI: 10.57745/prohjr
title: slice00800.tif

description: :unav
DOI: 10.57745/xw3uz8
title: slice01366.tif

description: :unav
DOI: 10.13145/bacdive117454.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/bapjou
title: slice00240.tif

description: :unav
DOI: 10.57745/imqdty
title: slice01876.tif

description: :unav
DOI: 10.57745/xrsdjd
title: slice02169.tif

description: :unav
DOI: 10.13145/bacdive117455.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/lye4mr
title: slice02269.tif

description: :unav
DOI: 10.57745/ndxq76
title: slice01445.tif

description: :unav
DOI: 10.13145/bacdive117456.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/7ytz4d
title: slice01176.tif

description: :unav
DOI: 10.57745/xbrc8z
title: slice00461.tif

description: :unav
DOI: 10.57745/y8ci6f
title: slice02491.tif

description: :unav
DOI: 10.13145/bacdive117457.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/evlftd
title: slice02031.tif

description: :unav
DOI: 10.57745/j7wmn2
title: slice01919.tif

description: :unav
DOI: 10.57745/mkcp9u
title: slice00256.tif

description: :unav
DOI: 10.57745/bqhqs3
title: slice00310.tif

description: :unav
DOI: 10.57745/gkykoc
title: slice01868.tif

description: :unav
DOI: 10.57745/lucick
title: slice02210.tif

description: :unav
DOI: 10.13145/bacdive117458.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/ap87ek
title: slice01465.tif

description: :unav
DOI: 10.57745/unf93t
title: slice00330.tif

description: :unav
DOI: 10.57745/varjjp
title: slice02325.tif

description: :unav
DOI: 10.13145/bacdive117459.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.10928217
title: A re-analysis of an existing Drosophila melanogaster dataset reveals a new set of genes involved in post-mating response

description: The figures and tables presented here are part of a manuscript submitted for publication by Chloe J. Bennett and Rodolfo Aramayo entitled:

"A re-Analysis of an existing Drosophila melanogaster dataset reveals a new set of genes involved in post-mating response"

Abstract

RNA sequencing (RNA-seq) is a commonly used method to identify changes in gene expression between two conditions. The analysis of RNA-seq output is complicated, with the possibility of getting different results from the same raw data. We developed and deployed four parallel pipelines to reanalyze an existing dataset of two female Drosophila melanogaster tissue types before and after mating. The Drosophila post-mating response (PMR) is a well-characterized suite of changes that occur after mating, accompanied by a flux in gene expression. In comparing our study with the previous analysis of this dataset, we find our results to be more stringent, though we do identify a number of significant genes not found before. We also found variation among our own separate experiments, with gene-to-transcript isoform number and index building playing important roles in outcome. Finally, we identified a set of genes found by our pipeline that were not identified by the previous study and proposed potential roles for these genes in post-mating biology. Together, this work presents a critique of current RNA-seq analysis techniques and proposes multiple workflow adjustments that can increase the sensitivity, specificity, and stringency of differential gene expression studies.
DOI: 10.5281/zenodo.6685976
title: A re-analysis of an existing Drosophila melanogaster dataset reveals a new set of genes involved in post-mating response

description: The figures and tables presented here are part of a manuscript submitted for publication by Chloe J. Bennett and Rodolfo Aramayo entitled:

"A re-Analysis of an existing Drosophila melanogaster dataset reveals a new set of genes involved in post-mating response"

Abstract

RNA sequencing (RNA-seq) is a commonly used method to identify changes in gene expression between two conditions. The analysis of RNA-seq output is complicated, with the possibility of getting different results from the same raw data. We developed and deployed four parallel pipelines to reanalyze an existing dataset of two female Drosophila melanogaster tissue types before and after mating. The Drosophila post-mating response (PMR) is a well-characterized suite of changes that occur after mating, accompanied by a flux in gene expression. In comparing our study with the previous analysis of this dataset, we find our results to be more stringent, though we do identify a number of significant genes not found before. We also found variation among our own separate experiments, with gene-to-transcript isoform number and index building playing important roles in outcome. Finally, we identified a set of genes found by our pipeline that were not identified by the previous study and proposed potential roles for these genes in post-mating biology. Together, this work presents a critique of current RNA-seq analysis techniques and proposes multiple workflow adjustments that can increase the sensitivity, specificity, and stringency of differential gene expression studies.
DOI: 10.57745/1gebrz
title: slice02505.tif

description: :unav
DOI: 10.57745/3a1z7a
title: slice00139.tif

description: :unav
DOI: 10.57745/6nov57
title: slice02242.tif

description: :unav
DOI: 10.57745/zuvnp6
title: slice01749.tif

description: :unav
DOI: 10.13145/bacdive117460.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/aan6o4
title: slice01859.tif

description: :unav
DOI: 10.57745/idzqvz
title: slice00070.tif

description: :unav
DOI: 10.57745/kzujng
title: slice02316.tif

description: :unav
DOI: 10.13145/bacdive117461.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/5i89no
title: slice00029.tif

description: :unav
DOI: 10.57745/b2nlbp
title: slice00114.tif

description: :unav
DOI: 10.57745/shcaoe
title: slice01997.tif

description: :unav
DOI: 10.57745/zttis7
title: slice02246.tif

description: :unav
DOI: 10.57745/byeotk
title: slice00033.tif

description: :unav
DOI: 10.57745/ogd9bd
title: slice01789.tif

description: :unav
DOI: 10.57745/y7kz4o
title: slice02422.tif

description: :unav
DOI: 10.13145/bacdive117462.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/ilfgm5
title: slice01581.tif

description: :unav
DOI: 10.57745/mafivp
title: slice02452.tif

description: :unav
DOI: 10.57745/p7ortb
title: slice00425.tif

description: :unav
DOI: 10.13145/bacdive117463.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/fnitmb
title: slice01512.tif

description: :unav
DOI: 10.57745/ixsl4s
title: slice00916.tif

description: :unav
DOI: 10.57745/r6wzyf
title: slice02061.tif

description: :unav
DOI: 10.13145/bacdive117464.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.sqncte
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 2000-2019",
 "TaxonKey is Leopardus wiedii (Schinz, 1821)"
 ]
}

 The dataset includes 99 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010852-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuzqpt
title: Occurrence Download

description: A dataset containing 3992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is Historical occurrence of whales in Scottish Waters inferredfrom whaling records",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3992 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022327-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rcylfx
title: Occurrence Download

description: A dataset containing 321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Manihot dichotoma Ule",
 "HasCoordinate is true"
 ]
}

 The dataset includes 321 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061174-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4fkbx
title: Occurrence Download

description: A dataset containing 3314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Sphyrna lewini (Griffith & Smith, 1834)"
 ]
}

 The dataset includes 3314 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010853-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iozilw
title: Occurrence Download

description: A dataset containing 868 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carpinus caroliniana Walter",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 868 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061176-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwutl1
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus crassinervius (Blume) Rehder"
 ]
}

 The dataset includes 31 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010853-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pkaeja
title: Occurrence Download

description: A dataset containing 2051 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylloscopus ogilviegranti (La Touche, 1922)"
 ]
}

 The dataset includes 2051 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034223-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ds55ed
title: Occurrence Download

description: A dataset containing 86938143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.663 58.08,15.01158 58.08,20.40953 62.91131,26.432 68.30926,26.432 71.204,20.40047 71.204,16.26083 69.40793,14.45254 69.33597,13.20616 68.27318,9.5008 66.47496,4.663 63.33885,4.663 58.08))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 86938143 records from 1431 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024865-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbzqah
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lomanthus infernalis (Cabrera) H.Beltrán"
 ]
}

 The dataset includes 20 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172975-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvsjcq
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Manihot fruticulosa (Pax) D.J.Rogers & Appan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 219 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061189-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qa0i80
title: Occurrence Download

description: A dataset containing 455 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenoscyphus fraxineus (T.Kowalski) Baral, Queloz & Hosoya"
 ]
}

 The dataset includes 455 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010854-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zfrevl
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Manihot gabrielensis Allem",
 "HasCoordinate is true"
 ]
}

 The dataset includes 92 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061190-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etxpzb
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((163.93846 -50.55399,183.4296 -50.55399,183.4296 -33.781,163.93846 -33.781,163.93846 -50.55399))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mustela putorius Linnaeus, 1758"
 ]
}

 The dataset includes 87 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008790-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnmunw
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Pollen profile V and Ausfluss at Krumbach, Germany"
 ]
}

 The dataset includes 31 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010855-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sjmru1
title: Occurrence Download

description: A dataset containing 611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apocynaceae",
 "HasCoordinate is true",
 "Geometry POLYGON((-124.453124 46.134170,-121.904296 46.800059,-119.003906 46.800059,-117.949218 43.261206,-119.267578 41.178653,-117.949218 39.842286,-115.664062 37.370157,-120.146484 33.724339,-124.013671 37.020098,-126.474609 43.452918,-124.453124 46.134170))",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation"
 ]
 }
 ]
}

 The dataset includes 611 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061192-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sqsq6f
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Antithamnion cruciatum (C.Agardh) Nägeli"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106579-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.