cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24022791
title: Additional file 14 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 14: Table S10. Clinico-biological features of organoids from FAP and control patients including the DNA methylation value of the significant probes identified in the context of the RPSO2 gene in this study.
DOI: 10.6084/m9.figshare.24022779.v1
title: Additional file 10 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 10: Table S9. Statistics related to the high-content cell viability screen performed in DLD1 and HCT116 cells transduced with the indicated gRNAs and chimeric constructs.
DOI: 10.6084/m9.figshare.24022791.v1
title: Additional file 14 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 14: Table S10. Clinico-biological features of organoids from FAP and control patients including the DNA methylation value of the significant probes identified in the context of the RPSO2 gene in this study.
DOI: 10.6084/m9.figshare.24022794.v1
title: Additional file 15 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 15: Table S11. Survival data and average DNA methylation/gene expression values of the TCGA-COAD patients included in the analyses related to the adenoma to carcinoma hypothesis.
DOI: 10.6084/m9.figshare.24022797.v1
title: Additional file 16 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 16: Table S12. List of primers used in this study.
DOI: 10.15468/dl.3mrgx8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.544674 -32.798181, 148.544674 -32.802672, 148.549166 -32.802672, 148.549166 -32.798181, 148.544674 -32.798181))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067633-240626123714530/datasets/export for details.
DOI: 10.15468/dl.8xdq8k
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Duttaphrynus melanostictus (Schneider, 1799))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900",
 "BasisOfRecord is one of (Specimen)",
 "Country is one of (Indonesia)",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 20000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 164 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067634-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26612615
title: Additional file 3 of Mapping the Theoretical Domain Framework to the Consolidated Framework for Implementation Research: do multiple frameworks add value?

description: Additional file 3. Frequency mapping of key TDF domains to key CFIR domains & constructs.
DOI: 10.6084/m9.figshare.26693449
title: Additional file 2 of Advancing material property prediction: using physics-informed machine learning models for viscosity

description: Additional file 2. Viscosity dataset used for generating ML models.
DOI: 10.6084/m9.figshare.26693449.v1
title: Additional file 2 of Advancing material property prediction: using physics-informed machine learning models for viscosity

description: Additional file 2. Viscosity dataset used for generating ML models.
DOI: 10.6084/m9.figshare.26693452
title: Additional file 3 of Advancing material property prediction: using physics-informed machine learning models for viscosity

description: Additional file 3. Viscosity predictions for 50 battery-relevant solvents at temperature ranges between 270 K - 330 K.
DOI: 10.6084/m9.figshare.26693452.v1
title: Additional file 3 of Advancing material property prediction: using physics-informed machine learning models for viscosity

description: Additional file 3. Viscosity predictions for 50 battery-relevant solvents at temperature ranges between 270 K - 330 K.
DOI: 10.6084/m9.figshare.26573542
title: Additional file 2 of A simple method for taxon-specific purification of diatom frustules from ocean sediments using a cell sorter

description: Additional file 2. Supplementary Tables S1–S8. Raw data on the diatom assemblages (Tables S1–S7); Coordinates of the designated sorting regions (Table S8) (Excel).
DOI: 10.6084/m9.figshare.26573542.v1
title: Additional file 2 of A simple method for taxon-specific purification of diatom frustules from ocean sediments using a cell sorter

description: Additional file 2. Supplementary Tables S1–S8. Raw data on the diatom assemblages (Tables S1–S7); Coordinates of the designated sorting regions (Table S8) (Excel).
DOI: 10.6084/m9.figshare.24022755.v1
title: Additional file 2 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 2: Table S2. List of differentially methylated CpGs identified in each of the cohorts used in this study.
DOI: 10.6084/m9.figshare.24022770
title: Additional file 7 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 7: Table S7. List of common differentially methylated regions (DMR) between healthy colon samples and the different tumour datasets (E-MTAB-8505, GSE68838 and GSE79185) used in this study.
DOI: 10.6084/m9.figshare.24022770.v1
title: Additional file 7 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 7: Table S7. List of common differentially methylated regions (DMR) between healthy colon samples and the different tumour datasets (E-MTAB-8505, GSE68838 and GSE79185) used in this study.
DOI: 10.6084/m9.figshare.24022776
title: Additional file 9 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 9: Table S8. List of gRNA sequences designed for the epigenetic modulation of genes with robust correlation between DNA methylation and gene expression in CRC samples.
DOI: 10.6084/m9.figshare.24022776.v1
title: Additional file 9 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 9: Table S8. List of gRNA sequences designed for the epigenetic modulation of genes with robust correlation between DNA methylation and gene expression in CRC samples.
DOI: 10.6084/m9.figshare.24022779
title: Additional file 10 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 10: Table S9. Statistics related to the high-content cell viability screen performed in DLD1 and HCT116 cells transduced with the indicated gRNAs and chimeric constructs.
DOI: 10.15468/dl.5yu7dz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.591836 -32.802672, 148.596327 -32.802672, 148.596327 -32.798181, 148.591836 -32.798181, 148.591836 -32.802672)), ((148.591836 -32.802672, 148.58959 -32.802672, 148.58959 -32.804918, 148.591836 -32.804918, 148.591836 -32.802672)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067635-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26612492
title: Additional file 6 of Desmocollin-1 is associated with pro-metastatic phenotype of luminal A breast cancer cells and is modulated by parthenolide

description: Additional file 6. Results of Gene Set Enrichment Analysis (GSEA) of pull-down data including GSEA enriched pathways and core enriched genes.
DOI: 10.6084/m9.figshare.24022761
title: Additional file 4 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 4: Table S4. Histone mark enrichment analysis of common DMPs in colorectal-related tissues and embryonic stem cells from the Roadmap and ENCODE consortia.
DOI: 10.6084/m9.figshare.26693491
title: Additional file 2 of Modeling antibody drug conjugate potential using a granzyme B antibody fusion protein

description: Additional file 2. Individual values for data analyzed in this study.
DOI: 10.6084/m9.figshare.26693491.v1
title: Additional file 2 of Modeling antibody drug conjugate potential using a granzyme B antibody fusion protein

description: Additional file 2. Individual values for data analyzed in this study.
DOI: 10.6084/m9.figshare.24022764.v1
title: Additional file 5 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 5: Table S5. Chromatin state enrichment analysis of common DMPs in colorectal-related tissues and embryonic stem cells from the Roadmap and ENCODE consortia.
DOI: 10.6084/m9.figshare.26612492.v1
title: Additional file 6 of Desmocollin-1 is associated with pro-metastatic phenotype of luminal A breast cancer cells and is modulated by parthenolide

description: Additional file 6. Results of Gene Set Enrichment Analysis (GSEA) of pull-down data including GSEA enriched pathways and core enriched genes.
DOI: 10.6084/m9.figshare.26693497
title: Additional file 2 of Polygenic risk score-based phenome-wide association study of head and neck cancer across two large biobanks

description: Additional file 2: Table S8. Full results of HNSCC PRS-PheWAS in UK Biobank and Penn Medicine Biobank. Table S9. Full results of OPC PRS-PheWAS in UK Biobank and Penn Medicine Biobank. Table S10. Full results of OC PRS-PheWAS in UK Biobank and Penn Medicine Biobank.
DOI: 10.6084/m9.figshare.26693497.v1
title: Additional file 2 of Polygenic risk score-based phenome-wide association study of head and neck cancer across two large biobanks

description: Additional file 2: Table S8. Full results of HNSCC PRS-PheWAS in UK Biobank and Penn Medicine Biobank. Table S9. Full results of OPC PRS-PheWAS in UK Biobank and Penn Medicine Biobank. Table S10. Full results of OC PRS-PheWAS in UK Biobank and Penn Medicine Biobank.
DOI: 10.6084/m9.figshare.26612483
title: Additional file 3 of Desmocollin-1 is associated with pro-metastatic phenotype of luminal A breast cancer cells and is modulated by parthenolide

description: Additional file 3. Results of RNA-Seq analysis of total transcriptome. A) RNA-Seq protein-coding transcript level data from transcriptomics experiment comparing transcript profiles in MCF7-DSC1-GFP and control MCF7-GFP cell line. B) RNA-Seq protein-coding transcript level data from transcriptomics experiment comparing transcript profiles in MCF7-DSC1-GFP cell line treated with parthenolide and MCF7-DSC1-GFP cell line treated with DMSO. C) RNA-Seq protein-coding transcript level data from transcriptomics experiment comparing transcript profiles in MCF7-GFP cell line treated with parthenolide and MCF7-GFP cell line treated with DMSO. D) RNA-Seq protein-coding transcript level data from transcriptomics experiment comparing transcript profiles in MCF7-DSC1-GFP cell line treated with parthenolide and MCF7-GFP cell line treated with parthenolide.
DOI: 10.6084/m9.figshare.24022794
title: Additional file 15 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 15: Table S11. Survival data and average DNA methylation/gene expression values of the TCGA-COAD patients included in the analyses related to the adenoma to carcinoma hypothesis.
DOI: 10.6084/m9.figshare.26612489
title: Additional file 5 of Desmocollin-1 is associated with pro-metastatic phenotype of luminal A breast cancer cells and is modulated by parthenolide

description: Additional file 5. Results of the pull-down identification of DSC1 protein interaction partners. A) Mass spectrometry protein group level data from pull-down experiment comparing protein levels in MCF7-DSC1-GFP and control MCF7-GFP cell line pull-downs. B) Mass spectrometry protein group level data from pull-down experiment comparing protein levels in MCF7-DSC1-GFP cell line treated with parthenolide and MCF7-DSC1-GFP treated with DMSO cell line pull-downs. C) Proteins significantly upregulated (q-value &lt; 0.05 and Log2 FC &gt; 1) in pull-down without parthenolide (PTL) treatment (comparison MCF7-DSC1-GFP vs. MCF7-GFP) and not statistically significantly upregulated in total proteome analysis (either "q-value &gt; 0.05 when Log2 FC &gt; 0" or "Log2 FC &lt; 0" or not identified) in total proteome comparison MCF7-DSC1-GFP vs. MCF7-GFP.
DOI: 10.6084/m9.figshare.24022797
title: Additional file 16 of CRISPR/dCAS9-mediated DNA demethylation screen identifies functional epigenetic determinants of colorectal cancer

description: Additional file 16: Table S12. List of primers used in this study.
DOI: 10.6084/m9.figshare.26612489.v1
title: Additional file 5 of Desmocollin-1 is associated with pro-metastatic phenotype of luminal A breast cancer cells and is modulated by parthenolide

description: Additional file 5. Results of the pull-down identification of DSC1 protein interaction partners. A) Mass spectrometry protein group level data from pull-down experiment comparing protein levels in MCF7-DSC1-GFP and control MCF7-GFP cell line pull-downs. B) Mass spectrometry protein group level data from pull-down experiment comparing protein levels in MCF7-DSC1-GFP cell line treated with parthenolide and MCF7-DSC1-GFP treated with DMSO cell line pull-downs. C) Proteins significantly upregulated (q-value &lt; 0.05 and Log2 FC &gt; 1) in pull-down without parthenolide (PTL) treatment (comparison MCF7-DSC1-GFP vs. MCF7-GFP) and not statistically significantly upregulated in total proteome analysis (either "q-value &gt; 0.05 when Log2 FC &gt; 0" or "Log2 FC &lt; 0" or not identified) in total proteome comparison MCF7-DSC1-GFP vs. MCF7-GFP.
DOI: 10.6084/m9.figshare.26612483.v1
title: Additional file 3 of Desmocollin-1 is associated with pro-metastatic phenotype of luminal A breast cancer cells and is modulated by parthenolide

description: Additional file 3. Results of RNA-Seq analysis of total transcriptome. A) RNA-Seq protein-coding transcript level data from transcriptomics experiment comparing transcript profiles in MCF7-DSC1-GFP and control MCF7-GFP cell line. B) RNA-Seq protein-coding transcript level data from transcriptomics experiment comparing transcript profiles in MCF7-DSC1-GFP cell line treated with parthenolide and MCF7-DSC1-GFP cell line treated with DMSO. C) RNA-Seq protein-coding transcript level data from transcriptomics experiment comparing transcript profiles in MCF7-GFP cell line treated with parthenolide and MCF7-GFP cell line treated with DMSO. D) RNA-Seq protein-coding transcript level data from transcriptomics experiment comparing transcript profiles in MCF7-DSC1-GFP cell line treated with parthenolide and MCF7-GFP cell line treated with parthenolide.
DOI: 10.6084/m9.figshare.26612486.v1
title: Additional file 4 of Desmocollin-1 is associated with pro-metastatic phenotype of luminal A breast cancer cells and is modulated by parthenolide

description: Additional file 4. Results of Gene Set Enrichment Analysis (GSEA) of A) total proteome data and B) transcriptomics data including GSEA enriched pathways and core enriched genes.
DOI: 10.6084/m9.figshare.26573557
title: Additional file 3 of Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes

description: Additional file 3: Table S5 shows all latent core-resistome ARGs and the fARGene gene sequences within their clusters (90% identity level). The table includes the gene sequence identifiers; the clusters to which each sequence belongs; which of the sequences were cluster centroids and, hence, used as the representative sequence for the ARG; and the nucleotide sequences. Table S6 shows the context analysis of all latent core-resistome ARGs. The table includes the cluster identifiers; ARG class; the number of gene sequences in the cluster; the closest established ARG with % amino acid identity to CARD; host phyla of the gene sequences when identified; host species of the gene sequences when identified with human pathogens marked; genes associated with mobile genetic elements (MGEs) identified in the genetic context of the gene; co-localized ARGs in the genetic context of the gene; and the environments where the ARG was considered part of the core-resistome. Table S7 corresponds to the 10,375 metagenomic run IDs included in this study and retrieved from the ENA. Table S8 corresponds to the NCBI Assembly IDs used to build the fARGene database.
DOI: 10.6084/m9.figshare.26573557.v1
title: Additional file 3 of Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes

description: Additional file 3: Table S5 shows all latent core-resistome ARGs and the fARGene gene sequences within their clusters (90% identity level). The table includes the gene sequence identifiers; the clusters to which each sequence belongs; which of the sequences were cluster centroids and, hence, used as the representative sequence for the ARG; and the nucleotide sequences. Table S6 shows the context analysis of all latent core-resistome ARGs. The table includes the cluster identifiers; ARG class; the number of gene sequences in the cluster; the closest established ARG with % amino acid identity to CARD; host phyla of the gene sequences when identified; host species of the gene sequences when identified with human pathogens marked; genes associated with mobile genetic elements (MGEs) identified in the genetic context of the gene; co-localized ARGs in the genetic context of the gene; and the environments where the ARG was considered part of the core-resistome. Table S7 corresponds to the 10,375 metagenomic run IDs included in this study and retrieved from the ENA. Table S8 corresponds to the NCBI Assembly IDs used to build the fARGene database.
DOI: 10.15468/dl.qfec7d
title: Occurrence Download

description: A dataset containing 373 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Totoaba macdonaldi (Gilbert, 1890)"
 ]
}

 The dataset includes 373 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067637-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26612453
title: Additional file 2 of Rare diseases: why is a rapid referral to an expert center so important?

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26612453.v1
title: Additional file 2 of Rare diseases: why is a rapid referral to an expert center so important?

description: Supplementary Material 2
DOI: 10.15468/dl.3pmvwq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.645735 -32.798181, 148.645735 -32.802672, 148.652472 -32.802672, 148.652472 -32.798181, 148.645735 -32.798181)), ((148.652472 -32.802672, 148.652472 -32.807164, 148.656964 -32.807164, 148.656964 -32.802672, 148.652472 -32.802672)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067639-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26612426.v1
title: Additional file 5 of ClpP protease modulates bacterial growth, stress response, and bacterial virulence in Brucella abortus

description: Additional file5: RNA-seq analysis results of WT and the ΔclpP strain.
DOI: 10.6084/m9.figshare.26612426
title: Additional file 5 of ClpP protease modulates bacterial growth, stress response, and bacterial virulence in Brucella abortus

description: Additional file5: RNA-seq analysis results of WT and the ΔclpP strain.
DOI: 10.6084/m9.figshare.26612432.v1
title: Additional file 7 of ClpP protease modulates bacterial growth, stress response, and bacterial virulence in Brucella abortus

description: Additional file 7: Integrated Analysis results of WT and the ΔclpP strain.
DOI: 10.15468/dl.26fhgb
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Drosera admirabilis Debbert"
 ]
}

 The dataset includes 159 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067640-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.12061.84969
title: The Importance of the application of Strategic Management Accounting Techniques In Libyan Commercial Banks "A field study on public administration managers in the Eastern Province". أهمية تطبيق أساليب المحاسبة الإدارية الاستراتيجية بالمصارف التجارية الليبية " دراسة ميدانية على مدراء الإدارات العامة بالمنطقة الشرقية "
DOI: 10.5517/cct754b
title: CCDC 751661: Experimental Crystal Structure Determination

description: Related Article: V. O. Domingues, R. Horner, L. G. B. Reetz, F. Kuhn, V. M. Coser, J. N. Rodrigues, R. Bauchspiess, W. V. Pereira, G. L. Paraginski, A. Locatelli, J. de O. Fank, Vinicius F. Giglio, M. Horner|2010|J.Braz.Chem.Soc.|21|2226|doi:10.1590/S0103-50532010001200009
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cct7cq3
title: CSD 751865: Experimental Crystal Structure Determination

description: Related Article: B.F.Alfonso,J.A.Blanco,M.T.Fernandez-Diaz,C.Trobajo,S.A.Khainakov,J.R.Garcia|2010|Dalton Trans.|39|1791|doi:10.1039/b912427f
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cct75t0
title: CCDC 751682: Experimental Crystal Structure Determination

description: Related Article: Hong-Wu Xu, Liu-Xue Zhang, Jin-Xia Li|2014|Synth.React.Inorg.,Met.-Org.,Nano-Met.Chem.|44|208|doi:10.1080/15533174.2013.769589
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.