cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.76hdr7t07
title: Data for: Soil microbiota explain differences in herbivore resistance between native and invasive populations of a perennial herb

description: Soil microbiota can either slow down or facilitate plant invasions through
 their effects on plant performance. Associations with soil microbiota can
 also modify other plant traits such as herbivore resistance, which can
 indirectly affect the outcome of plant introductions. We studied the
 effects of soil microbiota on the perennial herbaceous legume Lupinus
 polyphyllus that hosts nitrogen-fixing mutualistic bacteria. We compared
 the plant performance, herbivore resistance, and volatile organic
 compounds (VOCs) of plants from native (North American) and invasive
 (Finnish) populations of the species that were inoculated with intact or
 autoclaved soil from an invasive population. We found that plants of both
 origins greatly benefited from the intact soil inoculum with respect to
 all performance measures considered, suggesting that beneficial
 nitrogen-fixing rhizobia in the soil play a major role in shaping plant
 phenotypes. For three traits, effects of the intact soil inoculum were
 stronger in plants of native origin than in plants of invasive origin
 (number of leaves, herbivore resistance, and total biomass). With the
 intact soil inoculum, plants of invasive origin were more resistant to
 snails than plants of native origin. Strikingly, differences in resistance
 to snails between plants of different origins disappeared entirely when
 soil microbes were reduced. Soil inoculum treatment altered the
 composition of the leaf VOC bouquet similarly regardless of plant origin.
 Synthesis: These results demonstrate the ability of L. polyphyllus to
 associate with and benefit from putatively novel soil microbiota including
 rhizobia, which has likely contributed to its invasion success.
 Furthermore, it appears that the invasive populations have adapted to be
 less reliant on their symbionts, which further facilitates species spread.
 To our knowledge, this is the first study to demonstrate that differences
 in herbivore resistance between native and invasive plant populations of
 the same species can depend entirely on soil microbiota.
DOI: 10.22008/promice/data/ice_discharge/d/v02/nrkzlr
title: region_D.csv

description: Regional discharge. Git hash: c2c886d
DOI: 10.22008/promice/data/ice_discharge/d/v02/ylwfik
title: region_err.csv

description: Regional error. Git hash: c2c886d
DOI: 10.22008/promice/data/ice_discharge/d/v02/zcyide
title: region.nc

description: Regional discharge, coverage, and error. Git hash: c2c886d
DOI: 10.22008/promice/data/ice_discharge/d/v02/jcpmo4
title: sector_coverage.csv

description: Sector coverage. Git hash: c2c886d
DOI: 10.22008/promice/data/ice_discharge/d/v02/ssrag6
title: sector_D.csv

description: Sector discharge. Git hash: c2c886d
DOI: 10.22008/promice/data/ice_discharge/d/v02/9pwdu3
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: c2c886d
DOI: 10.22008/promice/data/ice_discharge/d/v02/ck8uaz
title: sector_err.csv

description: Sector error. Git hash: c2c886d
DOI: 10.22008/promice/data/ice_discharge/d/v02/apaztx
title: gate_coverage.csv

description: Gate coverage. Git hash: 74d74e2
DOI: 10.22008/promice/data/ice_discharge/d/v02/cuq6lp
title: gate_D.csv

description: Gate discharge. Git hash: 74d74e2
DOI: 10.22008/promice/data/ice_discharge/d/v02/p7q9wl
title: gate_err.csv

description: Gate errors. Git hash: 74d74e2
DOI: 10.5061/dryad.rxwdbrvc2
title: Vulnerability of sea turtle nesting sites to erosion and inundation: a decision support framework to maximize conservation

description: Sandy beaches provide essential nesting habitat for sea turtles but are
 threatened globally by a rapidly changing climate. Identifying which
 nesting sites are at greatest risk from erosion and inundation remains an
 important goal of sea turtle conservation globally. Yet, efforts to
 identify at-risk sites have been hindered by the ability to model complex
 processes and incomplete information on nesting distribution and
 abundance. To assess the erosion and inundation risk to the reproductive
 success of a discrete genetic stock of flatback turtles (Natator
 depressus) across its nesting range in the Pilbara region of Western
 Australia, we used the Integrated Valuation of Ecosystem Services and
 Trade-offs (InVEST) Coastal Vulnerability Model. A relative exposure index
 was calculated for 402 nesting beaches in terms of six geophysical
 variables: wind and wave exposure, surge potential, relief, observed sea
 level rise and coastal geomorphology, and coupled with published
 information on the distribution and abundance of turtle tracks in the
 region.   The majority of beaches (74%) had an intermediate to
 high exposure. In particular, 36% of beaches with a high abundance of
 flatback tracks (the top 25% of the frequency distribution) had a high
 exposure (the top 25% of the frequency distribution). This suggests that
 coastal exposure is a key vulnerability to the reproductive success of sea
 turtles that nest in this region. Promisingly, five beaches with a high
 abundance of turtle tracks also had a low exposure (bottom 25% of the
 frequency distribution) and these beaches may be critical for the
 long-term resilience of the stock against sea level rise and severe
 storms. Exposure varied across nesting sites and the approach presented
 here allows for a rapid and broadscale assessment of relative erosion and
 inundation risks at a scale most relevant to management.
DOI: 10.22008/promice/data/ice_discharge/d/v02/nypgxy
title: gate_meta.csv

description: Gate metadata. Git hash: 74d74e2
DOI: 10.22008/promice/data/ice_discharge/d/v02/7faser
title: GIS_coverage.csv

description: Greenland coverage. Git hash: 74d74e2
DOI: 10.22008/promice/data/ice_discharge/d/v02/dsavin
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 74d74e2
DOI: 10.22008/promice/data/ice_discharge/d/v02/hbnowb
title: GIS_D.csv

description: Greenland discharge. Git hash: 74d74e2
DOI: 10.22008/promice/data/ice_discharge/d/v02/pxadyj
title: GIS_err.csv

description: Greenland error. Git hash: 74d74e2
DOI: 10.5061/dryad.k98sf7m86
title: Novel trophic subsidies from recreational angling transform the trophic ecology of freshwater fishes

description: Angling is a globally popular leisure activity. There are over 31 million
 anglers in Europe, many of which target species of the Cyprinidae family
 in lowland freshwater ecosystems using methods generally involving bait
 (e.g. groundbaits, seeds and pellets), with large bait inputs possible in
 periods of high angling activity. While these bait inputs act as novel
 trophic subsidies (‘angling subsidy’), substantial knowledge gaps remain
 on their influence on freshwater food-webs, including on fish trophic
 niche size and position. The effects of angling subsidies on the trophic
 ecology of cyprinid fish populations and their macroinvertebrate prey
 resources were investigated in field studies comparing waters of high
 angling activity (‘subsidised fisheries’) versus low angling activity
 (‘non-subsidised fisheries’), and complemented by a pond experiment using
 two cyprinid species in subsidy absence/presence. Methods were based on
 stable isotope analysis, with angling subsidies being δ13C enriched and,
 generally, δ15N depleted compared to macroinvertebrate prey resources. In
 the subsidised fisheries, while there were minimal influences of the baits
 on macroinvertebrate stable isotope values, the effects of the subsidies
 on all fish species were to substantially δ13C enrich and δ15N deplete
 their isotopic niches. However, patterns of inter-specific niche
 divergence remained similar between the species in subsidy presence. In
 the pond experiment, there was strong isotopic association between the two
 fish species and macroinvertebrate putative prey in subsidy absence. In
 treatments that then exposed both species to angling subsidies, their
 stable isotope values shifted to enriched δ13C. Synthesis and application:
 Where angling activity is high, angling baits can provide strong trophic
 subsidies to freshwater fish, but with minimal effects on other trophic
 levels. Their regular input into freshwaters can provide some substantial
 benefits for fish (e.g. increased growth rates) and fisheries (e.g.
 elevated carrying capacity, higher catch rates), but can also increase
 nutrient enrichment and potentially raise ethical and fish welfare
 concerns. Thus, in allowing the use of these baits, especially in
 relatively high quantities, managers must balance the benefits they can
 deliver to fish and fisheries versus the adverse effects their use can
 have on freshwater organisms and ecosystem functioning.
DOI: 10.22008/promice/data/ice_discharge/d/v02/5sdxrd
title: README.txt

description: README. Git hash: 25f5e20
DOI: 10.22008/promice/data/ice_discharge/d/v02/cb0ufx
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 74d74e2
DOI: 10.22008/promice/data/ice_discharge/d/v02/glzavo
title: region_coverage.csv

description: Regional coverage. Git hash: 25f5e20
DOI: 10.22008/promice/data/ice_discharge/d/v02/e5wkpz
title: region_err.csv

description: Regional error. Git hash: 25f5e20
DOI: 10.22008/promice/data/ice_discharge/d/v02/iattvv
title: region_D.csv

description: Regional discharge. Git hash: 25f5e20
DOI: 10.5061/dryad.pzgmsbcpw
title: Data from: Millepora in Pleistocene coral reefs of Egypt

description: Millepora, a hydrozoan coral, is a common component in modern tropical
 reefs throughout the world. In ecological and palaeoecological surveys it
 is often grouped with scleractinian corals, which are the prevailing
 builders of coral reefs. On modern, current-exposed reefs in the Red
 Sea, Millepora can become the dominant coral. However,
 it is rarely found in fossil reefs and if present, its abundance is
 usually considerably lower than in modern reefs. The mismatch is often
 explained by a low preservation potential of the milleporid skeleton in
 the fossil record. We explore Millepora abundances in
 Pleistocene reefs of Egypt using 29 line transects (typically of 20 m
 length), and find its abundances to be comparable to that of adjacent
 modern reefs (between 0 and 18.8 ± 8.5 % per site). Comparisons
 between sites with and without Millepora suggest that
 site specific environmental characteristics determine the presence
 of Millepora in the fossil reef. We conclude that a lack
 of preservation of habitats preferred
 by Millepora instead of the preservation potential of
 the hydrozoan itself is the most plausible reason for the mismatch between
 modern and fossil abundances.
DOI: 10.15468/dl.dmfztw
title: Occurrence Download

description: A dataset containing 6700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Meetnetten.be - Transects for butterflies in Flanders, Belgium",
 "Year 2024-2026"
 ]
}

 The dataset includes 6700 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003144-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22008/promice/data/ice_discharge/d/v02/q7bu0q
title: sector_coverage.csv

description: Sector coverage. Git hash: 25f5e20
DOI: 10.22008/promice/data/ice_discharge/d/v02/xcxlvn
title: region.nc

description: Regional discharge, coverage, and error. Git hash: 25f5e20
DOI: 10.22008/promice/data/ice_discharge/d/v02/biuft3
title: sector_err.csv

description: Sector error. Git hash: 25f5e20
DOI: 10.22008/promice/data/ice_discharge/d/v02/pyluzo
title: sector_D.csv

description: Sector discharge. Git hash: 25f5e20
DOI: 10.22008/promice/data/ice_discharge/d/v02/empnvv
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: 25f5e20
DOI: 10.5061/dryad.0vt4b8h2g
title: The ClaDS rate-heterogeneous birth-death prior for full phylogenetic inference in BEAST2

description: Bayesian phylogenetic inference requires a tree prior, which models the
 underlying diversification process which gives rise to the phylogeny.
 Existing birth-death diversification models include a wide range of
 features, for instance lineage-specific variations in speciation and
 extinction rates. While across-lineage variation in speciation and
 extinction rates is widespread in empirical datasets, few heterogeneous
 rate models have been implemented as tree priors for Bayesian phylogenetic
 inference. As a consequence, rate heterogeneity is typically ignored when
 reconstructing phylogenies, and rate heterogeneity is usually investigated
 on fixed trees. In this paper, we present a new BEAST2 package
 implementing the cladogenetic diversification rate shift (ClaDS) model as
 a tree prior. ClaDS is a birth-death diversification model designed to
 capture small progressive variations in birth and death rates along a
 phylogeny. Unlike previous implementations of ClaDS, which were designed
 to be used with fixed, user-chosen phylogenies, our package is implemented
 in the BEAST2 framework and thus allows full phylogenetic inference, where
 the phylogeny and model are co-estimated from a molecular alignment. Our
 package provides all necessary components of the inference, including a
 new tree object and operators to propose moves to the MCMC. It also
 includes a graphical interface through BEAUti. We validate our
 implementation of the package by comparing the produced distributions to
 simulated data, and show an empirical example of the full inference, using
 a cetaceans dataset.
description: The data contained in this dataset was created and analyzed using
 the code in the Software section.
description: Software required: BEAST2 (https://www.beast2.org/) version 2.6.6 R (https://cran.r-project.org/)
DOI: 10.22008/promice/data/ice_discharge/d/v02/xyanui
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 25f5e20
DOI: 10.22008/promice/data/ice_discharge/d/v02/z3gj5h
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 25f5e20
DOI: 10.22008/promice/data/ice_discharge/d/v02/iw5lyn
title: gate_coverage.csv

description: Gate coverage. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/yokuna
title: gate_D.csv

description: Gate discharge. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/s2sdwy
title: gate_err.csv

description: Gate errors. Git hash: 33bfdb0
DOI: 10.5061/dryad.8pk0p2nqr
title: Population genomic evidence that stream networks structure genetic diversity in the narrowly endemic patch-nosed salamander (Urspelerpes brucei)

description: Described in 2009, the Patch-nosed Salamander (Urspelerpes brucei) is a
 miniature species of lungless salamander with a geographic range of only
 ~45 km2. This species is endemic to the foothills of the Appalachian
 Mountains in extreme northeastern Georgia and northwestern South Carolina.
 The Tugaloo River—a waterway of some 50 m in width that forms the
 political boundary between the two states—bisects the tiny range of U.
 brucei and likely acts as a barrier to gene flow. Using RADcap data and a
 suite of complementary population genomic analyses, we evaluated the role
 that this river and its tributaries may play in enabling and/or
 interrupting gene flow among populations of U. brucei, and we investigated
 patterns of within-population and between-population genetic variation.
 Our results revealed a general pattern of isolation-by-stream distance and
 indicated that a population separated by the Tugaloo River is moderately
 more differentiated than what is explainable by stream distance alone.
 Unique in both its physiography and geologic history, this region in which
 U. brucei lives also harbors more than a dozen other species of lungless
 salamanders. Therefore, the genetic patterns that we have elucidated may
 have larger implications for differentiation among populations of other
 species with similar dispersal abilities.
DOI: 10.22008/promice/data/ice_discharge/d/v02/gkxbcf
title: gate_meta.csv

description: Gate metadata. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/k8bhq2
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/5ui9tg
title: GIS_coverage.csv

description: Greenland coverage. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/lbinwc
title: GIS_err.csv

description: Greenland error. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/ovwmrl
title: GIS_D.csv

description: Greenland discharge. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/4aenpj
title: README.txt

description: README. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/m8tkjn
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/ocddes
title: region_coverage.csv

description: Regional coverage. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/wyxe1e
title: region_D.csv

description: Regional discharge. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/d9ny0q
title: region.nc

description: Regional discharge, coverage, and error. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/wb5kzx
title: region_err.csv

description: Regional error. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/i5pd9b
title: sector_coverage.csv

description: Sector coverage. Git hash: 33bfdb0
DOI: 10.5061/dryad.m0cfxpp66
title: Activity of forest specialist bats decreases towards wind turbines at forest sites

description: Worldwide, wind turbines are increasingly being built at forest sites to
 meet the goals of national climate strategies. Yet, the impact on forest
 ecosystems and biodiversity is barely understood. Bats may be heavily
 affected by wind turbines in forests, because many species depend on
 forest ecosystems for roosting and hunting and can experience high
 fatality rates at wind turbines. We performed acoustic surveys in 24
 temperate forests in the low mountain ranges of Central Germany to monitor
 changes in the acoustic activity of bats in relation to wind turbine
 proximity, rotor size, vegetation structure and season. Call sequences
 were identified and assigned to one of three functional guilds:
 open-space, edge-space and narrow-space foragers, the latter being mainly
 forest specialists. Based on the response behaviour of bats towards wind
 turbines in open landscapes, we predicted decreasing bat activity towards
 wind turbines at forest sites, especially for narrow-space foragers.
 Vertical vegetation heterogeneity had a strong positive effect on all
 bats, yet responses to wind turbines in forests varied across foraging
 guilds. Activity of narrow-space foragers decreased towards turbines over
 distances of several hundred meters, especially towards turbines with
 large rotors and during midsummer months. The activity of edge-space
 foragers did not change with distance to turbines or season, whereas the
 activity of open-space foragers increased close to turbines only in late
 summer. Synthesis and applications: We show that narrow-space foragers
 avoid wind turbines in forests over a spatial scale of several hundred
 meters. This response was most apparent towards turbines with large
 rotors. Since forests are an important habitat for this guild, we advise
 to exclude forests with diverse vegetation structure as potential wind
 turbine sites and to consider compensation measures to account for habitat
 degradation associated with the operation of wind turbines in forests.
description: Please find detailed description of the methods in our
 paper.
description: <strong>README.txt</strong> - File can be opened with
 an text editor.
 <strong>edge_space_foragers.xlsx</strong>,<br><strong>narrow_space_foragers.xlsx</strong>,<br><strong>open_space_foragers.xlsx </strong>- Files can be opened with Microsoft Word or open-source LibreOffice Writer. <strong>Bat_Activity_Analysis.Rmd</strong> - File can be opened with Rstudio. R needs to be installed.
DOI: 10.22008/promice/data/ice_discharge/d/v02/dn34fy
title: sector_err.csv

description: Sector error. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/zzohuf
title: sector_D.csv

description: Sector discharge. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/wclj8b
title: gate_coverage.csv

description: Gate coverage. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/x2etok
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: 33bfdb0
DOI: 10.22008/promice/data/ice_discharge/d/v02/apwyn9
title: gate_D.csv

description: Gate discharge. Git hash: 540a61a
DOI: 10.5061/dryad.x95x69pmq
title: Robust cone-mediated signaling persists late into rod photoreceptor degeneration

description: Rod photoreceptor degeneration causes deterioration in the morphology and
 physiology of cone photoreceptors along with changes in retinal circuits.
 These changes could diminish visual signaling at cone-mediated light
 levels, thereby limiting the efficacy of treatments such as gene therapy
 for rescuing normal, cone-mediated vision.  However, the impact
 of progressive rod death on cone-mediated signaling remains unclear. A
 mouse model of rod degeneration was used to investigate the fidelity of
 retinal ganglion cell (RGC) signaling throughout disease progression.
 Despite clear deterioration of cone morphology with rod death,
 cone-mediated signaling among RGCs remained surprisingly robust:
 spatiotemporal receptive fields changed little and the mutual information
 between stimuli and spiking responses was relatively constant. This
 relative stability held until nearly all rods had died and cones had
 completely lost well-formed outer segments. Interestingly, RGC information
 rates were higher and more stable for natural movies than checkerboard
 noise as degeneration progressed. The main change in RGC responses with
 photoreceptor degeneration was a decrease in response gain. These results
 suggest that gene therapies for rod degenerative diseases are likely to
 successfully prolong cone-mediated vision even if there are changes to
 cone morphology and density.
description: Raw image files used to create Figure 1.
description: FIJI, ImageJ, or NIS elements.
DOI: 10.22008/promice/data/ice_discharge/d/v02/pqciii
title: gate_meta.csv

description: Gate metadata. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/wqtpg5
title: gate_err.csv

description: Gate errors. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/gzgmel
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/osblif
title: GIS_coverage.csv

description: Greenland coverage. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/54oic4
title: GIS_D.csv

description: Greenland discharge. Git hash: 540a61a