cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/w98fkvz3rk.1
title: Multiple functions of Sir2-HerA system cooperate to defense viral infection, and Dongmei Tang et al.

description: Figure 3. ATP inhibited the helicase, nuclease, and NADase activities of Nezha. 
Figure 5H. Nuclease activity of purified Nezha’s Sir2 alone against single-strand DNA.
Figure S6. Figure S6. The NADase and nuclease activities of Nezha.
Figure S7A. Immunoblotting analysis of the expression of Nezha system during phage infection.
Figure 2F. Thin-layer chromatography analysis of Nezha ATPase against ATP or dATP. 
Figure 2B. Nezha showed no activity on non-adenine nucleotides. Thin-layer chromatography analysis of Nezha against various non-adenine nucleotides are shown.
DOI: 10.17632/vzr7cwp4v8.1
title: data for "Magnetic and structural characteristics associated with the transformation of As(V)-coprecipitated ferrihydrite to hematite: Implications for magnetic enhancement in soils and sediments"

description: Raw data for all figures and tables in the manuscript of "Magnetic and structural characteristics associated with the transformation of As(V)-coprecipitated ferrihydrite to hematite: Implications for magnetic enhancement in soils and sediments"
DOI: 10.17632/5k6yrrhng7.2
title: PEACH: A Sentence-Aligned Parallel English-Arabic Corpus for Healthcare

description: This paper introduces PEACH, a sentence-aligned parallel English–Arabic corpus of healthcare texts encompassing patient information leaflets and educational materials. The corpus contains 51,671 parallel sentences, totalling approximately 590,517 English and 567,707 Arabic word tokens. Sentence lengths vary between 9.52 and 11.83 words on average. As a manually aligned corpus, peach is a gold-standard corpus, aiding researchers in contrastive linguistics, translation studies, and natural language processing. It can be used to derive bilingual lexicons, adapt large language models for domain-specific machine translation, evaluate user perceptions of machine translation in healthcare, assess patient information leaflets and educational materials’ readability and lay-friendliness, and as an educational resource in translation studies. peach is publicly accessible.

Full corpus information is available through. 

Al-Sabbagh, R. (2024). PEACH: A Sentence-Aligned Parallel English-Arabic Corpus for Healthcare. Corpora, 19(3), 395-410. https://doi.org/10.3366/cor.2024.0320
DOI: 10.17632/jf86j6kvtt.1
title: Cytotoxic Effects of ATRA-1 and NA-CATH-ATRA-1ATRA-1

description: Cell viability data was obtained with a 570nm wavelength microplate reader. For the quantification of fluorescence levels, the Nikon Eclipse Ti-s inverted microscope was used, and the mean fluorescence intensity and the diameter of the cell spheroids were obtained using ImageJ software.
DOI: 10.17632/x6gvz8njpb.1
title: Glucagon-like peptide alters hepatic ketone metabolism in the Pacific spiny dogfish

description: No effects of chondrichthyan glucagon-like peptide were found on spiral valve. GLP-3 exerts metabolic effects on ketone, but not glucose liver metabolism, as shown by a switch from endogenous consumption to production of ketones, paired with increases in transcript abundance of putative ketone transporters and the activity of B-hydroxybutyrate dehydrogenase in the liver. Unique actions indicate early putative actions of GLP in vertebrate evolution.
DOI: 10.17632/r9c56z6zxf.1
title: Part 1 of Data for Immunomodulatory effects of colchicine on peripheral blood mononuclear cell subpopulations in human obesity: data from a randomized controlled trial. DOI 10.1002oby.23632

description: These are the underlying data for Patel TB, Levine JA, Elizondo DM, Arner BE, Jain A, Saxena A, Lopez-Ocasio M, Dagur PK, Famuyiwa O, Gupta S, Sarrafan-Chaharsoughi Z, Biancotto A, McCoy JP, Demidowich AP, Yanovski JA. Immunomodulatory effects of colchicine on peripheral blood mononuclear cell subpopulations in human obesity: data from a randomized controlled trial. Obesity, 2023, DOI 10.1002oby.23632
DOI: 10.17632/gsxhh3f4cr.1
title: Dataset for Bacteroidales as a Fecal Contamination Indicator in Fresh Produce Industry: A Baseline Measurement

description: We report a baseline measurement surveying the background Bacteroidales concentration, as a quantitative fecal contamination indicator, in California's Salinas Valley. In this dataset, we've included the raw data files associated with the research project.
DOI: 10.17632/p6ch724zbf.1
title: Data for The Effects of Sovereign Rating and Corporate Governance on the Capital Structure of Latin American Companies / published byBAR - Brazilian Administration Review

description: This study analyzed the effects of sovereign rating and corporate governance (GC) on the capital structure of Latin American companies. A multilevel regression model was used for 823 companies listed on the main Latin American exchanges in the period of 2004-2018. The results show that the firm level is most responsible for the variation in the capital structure of companies, while the country level had the greatest influence on the variation in long-term debt. In the absence of GC mechanisms, the sovereign rating is one of the factors not controlled by managers that can explain the capital structure of Latin American companies, which reduce their debt levels to protect themselves against changes in the sovereign rating of their countries. The results indicated that even having an audit committee and maintaining independent members on this committee, firms choose to reduce their debt levels, to protect themselves against constant variations in the sovereign rating of their respective countries. The results show that Corporate Governance mechanisms do not act in isolation when it comes to reducing agency problems.
DOI: 10.17632/c7zh35r9c4.1
title: Data from: Mastication treatments increase perennial herbaceous cover across soil types in southeastern Colorado piñon-juniper woodlands

description: In this study we assessed vegetation responses to mastication treatments across three dominant soil types in two-needle piñon (Pinus edulis Engelm. [Pinaceae]) - one-seed juniper (Juniperus monosperma [Engelm.] Sarg.) woodlands in southeast Colorado, USA – a region characterized by monsoonal precipitation, limited presence of introduced plant species, and relatively high grazing intensity by cattle and wildlife. We surveyed understory species composition in the year prior to mastication (2018) as well as 1 (2019) and 3 years (2021) post-mastication. Fifteen sites were established, with paired treatment and control plots that measured 10 by 50 meters. The line point intercept method was used to survey ground cover and plant community composition across all years. Targeted sampling of understory plants also occurred in small quadrats in 2019 and 2021 under where canopy trees existed prior to mastication, on the edge of the tree canopy prior to mastication, and in the interspace.
DOI: 10.17632/tx6nd5sfgs.1
title: Cowpea seedling stage drought screening data

description: This is a seedling stage drought screening work data collected using the SPAD chlorophyll meter readings. Results showed that genotypes with high SPAD chlorophyll meter readings showed tolerance to drought stress.
DOI: 10.17632/kg826wc77h.1
title: LDHU3_12.1250

description: Surface antigen protein 2; Leishmania donovani (HU3 strain)
DOI: 10.17632/mgbmb9c8kb.1
title: LDHU3_12.1420

description: Flagellum attachment zone protein 2 | FAZ2; Leishmania donovani (HU3 strain)
DOI: 10.17632/knr73gk6yp.1
title: LDHU3_12.1410

description: DnaJ domain-containing protein | JDP17 | J17; Leishmania donovani (HU3 strain)
DOI: 10.17632/2gr53mbyxr.1
title: LDHU3_12.1320

description: Surface antigenic protein | PSA-2; Leishmania donovani (HU3 strain)
DOI: 10.17632/2m5yptcswr.1
title: msarf

description: MSA plot after the outlier detection step.
DOI: 10.17632/mzvm7bnpsh.1
title: NaCl tracer experiments in the silica sand and zeolite columns

description: NaCl tracer tests were carried out in columns wetly packed with silica sand and zeolite clinoptilolite to monitor anomalous solute transport using geoelectrical measurements. The dataset includes monitoring data from 1) 90, 132, and 232 minutes experiments in zeolite column for 25, 12 and 6 mL/min flow rates, respectively, and 2) 108, 156, and 232 minutes experiments in silica sand column for 25, 12 and 6 mL/min flow rates, respectively.
DOI: 10.18164/ec5c8bbb-3bc8-4675-a9c6-103addd874b8
title: Estimates of critical loads and of acidity and nutrient nitrogen for mineral soils in Canada
title: Estimations des charges critiques ainsi que de l’acidité et de l’azote nutritif pour les sols minéraux au Canada

description: The concept of “critical loads” refers to the threshold levels of pollutants or stressors that an ecosystem can tolerate without experiencing significant harm or degradation. When the input of these stressors exceeds the critical load (“exceedance”), the ecosystem may experience biological damage. Critical loads are particularly important for understanding how atmospheric deposition may impact ecological health and for informing policy decisions aimed at environmental protection and sustainability. In a special study, the steady-state Simple Mass Balance model was applied to terrestrial ecosystems across Canada to produce nation-wide maps of critical loads of acidity (represented by maps of maximum sulphur critical loads, CLmaxS; maximum nitrogen critical loads, CLmaxN; and minimum nitrogen critical loads, CLminN) and nutrient nitrogen (CLnutN). The maps are provided on a 250 m grid across all provinces and territories for natural and semi-natural terrestrial ecosystems across Canada (excluding organic soils, agricultural areas, and the Hudson Plains ecozone).
description: Le concept de « charges critiques » fait référence aux seuils de polluants ou de facteurs de stress qu’un écosystème peut tolérer sans subir de dégradation ou de dommages importants. Lorsque l’apport de ces facteurs de stress dépasse la charge critique (« dépassement »), l’écosystème peut subir des dommages biologiques. Les charges critiques sont particulièrement importantes pour comprendre comment les dépôts atmosphériques peuvent avoir une incidence sur la santé écologique et pour éclairer les décisions stratégiques visant à assurer la protection et la durabilité de l’environnement. Dans le cadre d’une étude spéciale, un modèle de bilan massique simple à l’état d’équilibre a été appliqué à des écosystèmes terrestres du Canada pour produire des cartes nationales des charges critiques de l’acidité (représentées par des cartes des charges critiques maximales de soufre, CLmaxS, des charges critiques maximales d’azote, CLmaxN, et des charges critiques minimales d’azote, CLminN) et des charges critiques de l’azote nutritif (CLnutN). Les cartes sont fournies sur une grille de 250 m dans l’ensemble des provinces et territoires pour les écosystèmes terrestres naturels et semi-naturels du Canada (à l’exception des sols organiques, des zones agricoles et de l’écozone des Plaines hudsoniennes).
DOI: 10.17632/3jbmddct72.1
title: LDHU3_12.1550

description: ABC transporter; Leishmania donovani (HU3 strain)
DOI: 10.17632/zss5hvxyh5.1
title: The spatiotemporal response of mammal communities to pulse-driven resource availability in the Kalahari data

description: The objective of this study was to detect pulse events at a forage patch scale and to identify the subsequent responses from various mammal functional groups of mammals in the arid Kalahari Desert of South Africa. The aim was to, therefore, understand how the Kalahari functions on a finer scale, particularly with increased rainfall variability in the drier years. We predicted the green-up (pulse event) to be synchronized over large areas with extreme rainfall, while we expected low synchronicity and very patch green-up in dry years. As ephemeral plants respond to rain showers within 2-3 weeks, we predicted the following responses from the animal functional groups would be detectable within ~8 weeks after the green-up:
1. There would be an increase in abundance of large antelopes.
2. There would not be an increase in abundance of small antelopes after the pulse event. 
3. There would not be an increase in abundance of carnivores after the pulse event. 
4. There would be an increase in the meso-carnivore abundance.
5. There would be an increase in rodent and lagomorph abundance. 
6. As our cameras are in the dunes, we predict that during a period of normal rainfall, there would be a decrease in observations as animals may move to more attractive areas.
We gathered the data from 42 cameras located in Tswalu Kalahari Reserve (n=18), Kgalagadi Transfrontier Park (n=12) and Khomani San Community Land (n=12). We used greenness index values obtained from the phenopix package in R, and subsequently used relative abundance index to compare functional group abundance 4 weeks before the pulse event and 8 weeks after the pulse event, to determine if there was a response. We used two survey seasons, October to May in 2018-2019 and 2019-2020. 

In this study we developed a novel way to detect pulse events in arid systems using bycatch from camera trap data. We found clear patterns of green-up and a clear difference in the green-up/resource availability between season 18-19 and 19-20. We also found some differences in the mammals RAI between season 18-19 and 19-20. We were able to link the pulse events to the short-term response of large antelopes, in Kgalagadi and the Khomani San. We did, however, not see any other responses to the green-up, which with the limitations of our data suggest that the responses are likely to be longer term or occurring at a larger spatial scale. This has allowed for a deeper understanding of animal responses in unpredictable arid environments. Climate change threatens systems such as the Kalahari with rising air temperatures and further precipitation unpredictability. Droughts are to increase in magnitude and frequency. With this increase in system variability, it is crucial that arid landscapes are managed effectively, both short-term and long-term. To be able to manage the system, it is of utmost importance to further our knowledge of the Kalahari system. This study has provided a starting point to do so.
DOI: 10.17632/57g8z63tmy.1
title: Imagined Speech Datasets Applying Traditional and Gamified Acquisition Paradigms

description: Recent computational advances have benefited brain-computer interfaces, but human factors have been continuously overlooked. Paradigm design directly impacts users' emotional state, thus impacting brain signal quality. This dataset provides electroencephalographic (EEG) data of 15 participants while performing imagined speech. Each participant performed two paradigms: a traditional paradigm, based on conventional design; and an experimental (gamified) paradigm, based on a video game. All files were pre-processed using EEGLAB. Raw and pre-processed data are provided.

Additionally, a set of questionnaires was applied to allow the study of the effects of each paradigm on each participant. First, age and sex were registered. Participants then answered the Internal Representations Questionnaire, which provides individual propensities to different kinds of internal representations. The measured representations are visual imagery, internal verbalization, and orthographic imagery. This questionnaire also provides a self-rating on manipulating mental representations. Participants also answered a Self-Assessment Manikin test before and after each paradigm, to establish emotional state, and a User Experience Questionnaire after each paradigm, to evaluate each paradigm across attractiveness, perspicuity, efficiency, dependability, stimulation, and novelty. 
 
The Experimental Paradigm includes vocalized speech after every imagined speech instance. Each vocalized word was registered on a spreadsheet. Instances that contain errors are not recommended for training classification models.

Possible applications of this dataset include, but are not limited to: classifying between up to four different imagined speech words, identifying the differences between imagined speech and vocalized speech, and researching the impact of the acquisition paradigm on brain signals quality.
DOI: 10.17632/vkcs6xjpdh.1
title: Modulation of Photo-induced Raman Enhancement in Ag Nanoparticles deposited on Nanometer-thick TiO2 Films. An Interplay between Plasmonic Properties and Irradiation Energy

description: Abstract:

Photo-induced enhanced Raman spectroscopy (PIERS) is an innovative technology that offers additional enhancement in Raman signal compared to surface-enhanced Raman spectroscopy (SERS). In this study, we fabricated nanohybrids consisting of silver nanoparticles on an ultra-thin anatase film using a photoreduction method. This approach allowed for the controllable synthesis of SERS and PIERS nanoplatforms, characterized by oval-shaped nanoparticles, yet varying in size and surface coverage, leading to distinct plasmonic properties. A mere 15-minute UV pre-treatment with low photon density already initiated significant charge-transfer processes followed by Raman spectra under non-resonant conditions of the molecule and estimated by enhancement factor in the range of 12 - 17. This phenomenon was observed for a molecular monolayer of a thiol derivative. Not only boosting electron migration appeared. This unique interface of the Ag-anatase composite undoubtedly contributed to extended relaxation times of photo-induced enhancement. Furthermore, we investigated how plasmonic and morphological features of the nanoplatforms, in conjunction with UV and Vis illumination, modulated the migration of photoinduced electrons from the semiconductor to the metal. These findings highlighted the variety of processes contributing to the creation of efficient PIERS materials.
DOI: 10.17632/6pb3v7f78x.1
title: Effects of a eight-week combined training on functional capacity and inflammatory markers in middle-aged and older adults living with Type 2 Diabetes

description: Secondary outcomes of a clinical trial registered (WHO International Clinical Trials Registry Platform number U1111-1202-6942). The data included pre x post-assessments with a experimental and control groups.
DOI: 10.17632/vtkgd4zgsx.1
title: Representative dynamic accumulation of hydrate-bearing sediments within methane chimney in QiongDongNan area of northern South China Sea since 30 ka BP

description: This program compiled by matlab language aims at exploring dynamic evolution process of methane hydrate reservoirs controlled by gas chimneys in QiongDongNan seafloor slope surface of northern South China Sea. The evolution period is limited no more than 30 kya in order to agree with local sealevel rise pattern since that age.
DOI: 10.17632/h6t6cmwffs.1
title: Community Perceptions of the Economic Impact of Ecotourism in Zambia Data

description: This study aimed to examine community perceptions of the economic impact of ecotourism in Sioma Ngwezi National Park in Zambia. The research utilized a quantitative approach and focused on the community within and surrounding the national park. Through surveys of 193 individuals, the study found that ecotourism has some key positive economic benefits, but these benefits are primarily realized by government and private businesses, with limited benefit sharing with the local community. This lack of benefit sharing is attributed to the limited involvement of locals in the ecotourism sector, inadequate management practices that do not prioritize inclusivity or local economic empowerment, and a lack of dedicated ecotourism policies to guide sector development and management. The study recommends the development of policies and strategies that prioritize communication between park officials, community leaders, and government.This would ensure that economic benefits are equitably distributed among local communities.
DOI: 10.17632/9sspy7hdpc.1
title: LDHU3_12.1650

description: PRMT1 | Arginine N-methyltransferase (type I); Leishmania donovani (HU3 strain)
DOI: 10.17632/h3wsjydzh3.1
title: LDHU3_05.0350

description: phosphate carrier protein – mitochondrial | MCP8
Leishmania donovani (HU3 strain)
DOI: 10.17632/h3wsjydzh3.2
title: LDHU3_05.0350

description: Phosphate carrier protein – mitochondrial | MCP8; Leishmania donovani (HU3 strain)
DOI: 10.17632/zxg7h977xf.1
title: Imiquimod enhances Th1 and Th17 cell responses by inducing IL-12 and IL-6 production in dendritic cells via the NF-κB pathway

description: This study investigates how imiquimod (IMQ) influences the activation and maturation of dendritic cells (DCs) and their subsequent effects on T helper (Th) cell polarization, contributing to the understanding of immunopharmacological mechanisms in psoriasis. The dataset includes experimental data from in vitro assays (FACS, RT-PCR, ELISA, IF assay) where bone marrow-derived DCs were treated with IMQ to induce maturation and cytokine production. Additionally, co-culture experiments were performed with CD4 T cells isolated from OT-II mice to assess the functional effects of IMQ-activated DCs on T cell polarization.

Sample Collection: Bone marrow-derived DCs were isolated from mice and treated with various doses (0.1, 0.5, 1, and 2 µg/ml) of IMQ in a dose-dependent manner. Naive CD4 T cells were isolated from OT-II mice.
Measurement Techniques: The activation and maturation markers of DCs were assessed using flow cytometry (FACS). Data were further analyzed using FlowJo software to quantify the expression of maturation markers (CD40, CD80, CD86, and MHC class II). Pro-inflammatory cytokine levels (IL-12, IL-6, TNF-α, and IL-1β) were measured using RT-PCR and ELISA. The activation of the NF-κB pathway was confirmed through immunofluorescence (IF) assays. Inhibitors of NF-κB signaling (CAPE and BAY) were applied to evaluate their effects on IMQ-induced DC maturation and activation, confirming a reduction in DC activation through FACS analysis. Additionally, co-culture experiments with IMQ-treated DCs and OT-II mouse-derived CD4 T cells were conducted to confirm naive CD4 T cell polarization into Th1, Th17, and potentially Th9, which was also analyzed using FACS. To determine whether the secretion of IL-12 and IL-6 from IMQ-stimulated DCs is associated with increased Th1 and Th17 cell populations, neutralizing anti-IL-12 and anti-IL-6 monoclonal antibodies were added to the co-cultures.

These findings reveal that IMQ enhances Th1 and Th17 cell responses through the activation of DCs and the production of IL-12 and IL-6 via the NF-κB pathway. This study contributes to our understanding of the immunopharmacological mechanisms associated with imiquimod-induced psoriasis, suggesting potential therapeutic targets for psoriasis intervention.
DOI: 10.17632/8ncyt7vv68.1
title: LDHU3_13.0020

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/dzsdvm4yjc.1
title: Moment Tensor Potential for hydrogen diffusion in bcc metals

description: A moment tensor potentials (MTPs) for hydrogen diffusion in bcc metals. MTP training sets are also included, which were calculated by active learning and DFT calculations.

For the information of MTP, read Ref. [1] ~ [3].

Ref. [1] https://dx.doi.org/10.2139/ssrn.4254267
Ref. [2] A. V. Shapeev, Multiscale Modeling and Simululation, 14, 1153 (2016).
Ref. [3] I. S. Novikov, K. Gubaev, E. V. Podryabinkin, A. V. Shapeev, Machine Learning: Science and Technology, 2 025002 (2020).
DOI: 10.17632/yz7m3466hr.1
title: LDHU3_13.0060

description: Paraflagellar component 12 | PFC12; Leishmania donovani (HU3 strain)