cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23641/asha.12170112
title: Crowdsourced ratings of dysarthria treatment (Nightingale et al., 2020)

description: <b>Purpose: </b>Interventions for speech disorders aim to produce changes that are not only acoustically measurable or perceptible to trained professionals but are also apparent to naive listeners. Due to challenges associated with obtaining ratings from suitably large listener samples, however, few studies currently evaluate speech interventions by this criterion. Online crowdsourcing technologies could enhance the measurement of intervention effects by making it easier to obtain real-world listeners’ ratings.<b>Method:</b> Stimuli, drawn from a published study by Sapir et al. (“Effects of intensive voice treatment (Lee Silverman Voice Treatment [LSVT]) on vowel articulation in dysarthric individuals with idiopathic Parkinson disease: Acoustic and perceptual findings” in <i>Journal of Speech, Language, and Hearing Research, 50</i>(4), 2007), were words produced by individuals who received intensive treatment (LSVT LOUD) for hypokinetic dysarthria secondary to Parkinson’s disease. Thirty-six online naive listeners heard randomly ordered pairs of words elicited pre- and posttreatment and reported which they perceived as “more clearly articulated.”<b>Results: </b>Mixed-effects logistic regression indicated that words elicited posttreatment were significantly more likely to be rated “more clear.” Across individuals, acoustically measured magnitude of change was significantly correlated with pre–post difference in listener ratings. <b>Conclusions:</b> These results partly replicate the findings of Sapir et al. (2007) and demonstrate that their acoustically measured changes are detectable by everyday listeners. This supports the viability of using crowdsourcing to obtain more functionally relevant measures of change in clinical speech samples.<br><b>Supplemental Material S1.</b> Token-level measurements of F1 and F2, as well as subject-level measurements of F2i/F2u ratio, both before and after treatment. Contains no identifiers.<br><b>Supplemental Material S2.</b> Results of perceptual ratings obtained from AMT listeners. Contains no identifiers.<br><b>Supplemental Material S3. </b>The analyses and results reported in this study can be reproduced by following the below steps: (1) Place this .Rmd file and the above-listed data files in the same directory; (2) Open the .Rmd file using RStudio; (3) Set the Working Directory to the directory in (1) above; (4) Use the “Knit” command to generate an output document.<br>Nightingale, C., Swartz, M., Ramig, L. O., & McAllister, T. (2020). Using crowdsourced listeners’ ratings to measure speech changes in hypokinetic dysarthria: A proof-of-concept study. <i>American Journal of Speech-Language Pathology</i>. Advance online publication. https://doi.org/10.1044/2019_AJSLP-19-00162
DOI: 10.23641/asha.12170112.v1
title: Crowdsourced ratings of dysarthria treatment (Nightingale et al., 2020)

description: <b>Purpose: </b>Interventions for speech disorders aim to produce changes that are not only acoustically measurable or perceptible to trained professionals but are also apparent to naive listeners. Due to challenges associated with obtaining ratings from suitably large listener samples, however, few studies currently evaluate speech interventions by this criterion. Online crowdsourcing technologies could enhance the measurement of intervention effects by making it easier to obtain real-world listeners’ ratings.<b>Method:</b> Stimuli, drawn from a published study by Sapir et al. (“Effects of intensive voice treatment (Lee Silverman Voice Treatment [LSVT]) on vowel articulation in dysarthric individuals with idiopathic Parkinson disease: Acoustic and perceptual findings” in <i>Journal of Speech, Language, and Hearing Research, 50</i>(4), 2007), were words produced by individuals who received intensive treatment (LSVT LOUD) for hypokinetic dysarthria secondary to Parkinson’s disease. Thirty-six online naive listeners heard randomly ordered pairs of words elicited pre- and posttreatment and reported which they perceived as “more clearly articulated.”<b>Results: </b>Mixed-effects logistic regression indicated that words elicited posttreatment were significantly more likely to be rated “more clear.” Across individuals, acoustically measured magnitude of change was significantly correlated with pre–post difference in listener ratings. <b>Conclusions:</b> These results partly replicate the findings of Sapir et al. (2007) and demonstrate that their acoustically measured changes are detectable by everyday listeners. This supports the viability of using crowdsourcing to obtain more functionally relevant measures of change in clinical speech samples.<br><b>Supplemental Material S1.</b> Token-level measurements of F1 and F2, as well as subject-level measurements of F2i/F2u ratio, both before and after treatment. Contains no identifiers.<br><b>Supplemental Material S2.</b> Results of perceptual ratings obtained from AMT listeners. Contains no identifiers.<br><b>Supplemental Material S3. </b>The analyses and results reported in this study can be reproduced by following the below steps: (1) Place this .Rmd file and the above-listed data files in the same directory; (2) Open the .Rmd file using RStudio; (3) Set the Working Directory to the directory in (1) above; (4) Use the “Knit” command to generate an output document.<br>Nightingale, C., Swartz, M., Ramig, L. O., & McAllister, T. (2020). Using crowdsourced listeners’ ratings to measure speech changes in hypokinetic dysarthria: A proof-of-concept study. <i>American Journal of Speech-Language Pathology</i>. Advance online publication. https://doi.org/10.1044/2019_AJSLP-19-00162
DOI: 10.6084/m9.figshare.12168501
title: Rajahmundry Ar/Ar and Paleomag data tables

description: Data tables for Ar/Ar geochronology and paleomagnetic analyses for Rajahmundry basalt samples. Also included are the stratigraphic notes for the carbonate intertrappean unit and associated carbon isotope data.<br>
DOI: 10.6084/m9.figshare.12168465
title: proba

description: medicine
DOI: 10.5522/04/12168309
title: Corpora of patient information sheets and consent forms for UK cancer trials 2007-2017

description: Obtaining informed consent is an ethical imperative when conducting research involving human participants. However, participants’ actual level of understanding is often difficult and impractical to assess in operational research. One setting where the stakes for understanding are high due to the potential consequences of research participation is randomised controlled trials (RCTs), which test the effectiveness and safety of medical treatments. However, ethics committees' gatekeeping mechanisms often mean that legalese is mandated in consent forms, which can work against patients’ understanding. The goal of this text-based study was, therefore, to build and analyse a corpus of patient information sheets (PIS) and consent forms (CF) from RCTs conducted in the UK.<br>This data collection consists of 27 participant information sheets and 23 consent forms freely available on-line. Materials were collected following a comprehensive search for publicly available ethical materials from randomised control trials (RCTs) targeting cancer (2007-17), primarily by systematically searching key on-line databases and monograph series. These corpora, which are different, to our knowledge, than any existing collection of medical English, could further research on information provision for patients in RCTs specifically and in healthcare settings more generally, in addition to advancing the study of the language of written ethical documents. Secondary analyses of these data could be undertaken using techniques from corpus linguistics, computational linguistics, and/or discourse analysis, for example, to investigate the nature and complexity of the language used and/or broach participants’ understanding of ethical principles or preference for how different language functions are expressed. All ethical materials that comprise the corpora were freely obtained from the public domain via the web searches described. The ethical material that make up these corpora were drawn from a total of 28 distinct RCTs. <br><br>The data and metadata are free to download (open access) on the UK Data Archive's ReShare without needing to register on the site at the following link: http://reshare.ukdataservice.ac.uk/853933/<br>Citation: Isaacs, Talia and Murdoch, Jamie and Demjén, Zsófia and Stevenson, Fiona (2019). <em>Corpora of patient information sheets and consent forms for UK cancer trials 2007-2017.</em> [Data Collection]. Colchester, Essex: UK Data Service. 10.5255/UKDA-SN-853933
DOI: 10.6084/m9.figshare.12168282
title: Impact of type 2 diabetes mellitus and myocardial perfusion on the long-term risk of heart failure and all-cause mortality following the interventional treatment of ST-elevation myocardial infarction

description: <i>Impact of type 2 diabetes mellitus and myocardial perfusion on the long-term risk of heart failure and all-cause mortality following the interventional treatment of ST-elevation myocardial infarction - database</i><br>
DOI: 10.5522/04/12168309.v1
title: Corpora of patient information sheets and consent forms for UK cancer trials 2007-2017

description: Obtaining informed consent is an ethical imperative when conducting research involving human participants. However, participants’ actual level of understanding is often difficult and impractical to assess in operational research. One setting where the stakes for understanding are high due to the potential consequences of research participation is randomised controlled trials (RCTs), which test the effectiveness and safety of medical treatments. However, ethics committees' gatekeeping mechanisms often mean that legalese is mandated in consent forms, which can work against patients’ understanding. The goal of this text-based study was, therefore, to build and analyse a corpus of patient information sheets (PIS) and consent forms (CF) from RCTs conducted in the UK.<br>This data collection consists of 27 participant information sheets and 23 consent forms freely available on-line. Materials were collected following a comprehensive search for publicly available ethical materials from randomised control trials (RCTs) targeting cancer (2007-17), primarily by systematically searching key on-line databases and monograph series. These corpora, which are different, to our knowledge, than any existing collection of medical English, could further research on information provision for patients in RCTs specifically and in healthcare settings more generally, in addition to advancing the study of the language of written ethical documents. Secondary analyses of these data could be undertaken using techniques from corpus linguistics, computational linguistics, and/or discourse analysis, for example, to investigate the nature and complexity of the language used and/or broach participants’ understanding of ethical principles or preference for how different language functions are expressed. All ethical materials that comprise the corpora were freely obtained from the public domain via the web searches described. The ethical material that make up these corpora were drawn from a total of 28 distinct RCTs. <br><br>The data and metadata are free to download (open access) on the UK Data Archive's ReShare without needing to register on the site at the following link: http://reshare.ukdataservice.ac.uk/853933/<br>Citation: Isaacs, Talia and Murdoch, Jamie and Demjén, Zsófia and Stevenson, Fiona (2019). <em>Corpora of patient information sheets and consent forms for UK cancer trials 2007-2017.</em> [Data Collection]. Colchester, Essex: UK Data Service. 10.5255/UKDA-SN-853933
DOI: 10.6084/m9.figshare.12168501.v1
title: Rajahmundry Ar/Ar and Paleomag data tables

description: Data tables for Ar/Ar geochronology and paleomagnetic analyses for Rajahmundry basalt samples. <br>
DOI: 10.6084/m9.figshare.12168501.v3
title: Rajahmundry Ar/Ar and Paleomag data tables

description: Data tables for Ar/Ar geochronology and paleomagnetic analyses for Rajahmundry basalt samples. Also included are the stratigraphic notes for the carbonate intertrappean unit and associated carbon isotope data.<br>
DOI: 10.6084/m9.figshare.12168501.v2
title: Rajahmundry Ar/Ar and Paleomag data tables

description: Data tables for Ar/Ar geochronology and paleomagnetic analyses for Rajahmundry basalt samples. Also included are the stratigraphic notes for the carbonate intertrappean unit and associated carbon isotope data.<br>
DOI: 10.6084/m9.figshare.12168078
title: Effects of chronic treatment with new strains of Lactobacillus plantarum on cognitive, anxiety- and depressive-like behaviors in male mice

description: The present study evaluated the effects of chronic administration of two new strains of <i>Lactobacillus plantarum</i>, <i>L. plantarum</i> 286 (Lp 286) and <i>L. plantarum</i> 81 (Lp 81) isolated from the fermentation of cocoa (<i>Theobroma cacao</i> L.) and cupuaçu (<i>Theobroma grandiflorum</i>), respectively, on cognitive, anxiety- and depressive-like behaviors in male mice. Different groups of animals were administered (oral gavage) solutions of vehicle, Lp 286 or Lp 81 for 30 days, and animals were tested for general locomotor activity, depressive-like behavior in the forced swim test, and learning/memory and anxiety-like behavior in the plus-maze discriminative avoidance task. Treatment with the strains Lp 286 and Lp 81 did not interfere with locomotor activity or learning and memory. The Lp 286 strain exerted anti-depressant- and anxiolytic-like effects under our experimental conditions.
DOI: 10.6084/m9.figshare.12168114
title: Elastic properties of bulk and low-dimensional materials using van der Waals density functional

description: In this work we present a high-throughput first-principles study of elastic properties of bulk and monolayer materials mainly using the vdW-DF-optB88 functional. We discuss the trends on the elastic response with respect to changes in dimensionality. We identify a relation between exfoliation energy and elastic constants for layered materials that can help to guide the search for vdW bonding in materials. We also predicted a few novel materials with auxetic behavior. The uncertainty in structural and elastic properties due to the inclusion of vdW interactions is discussed. We investigated 11 067 bulk and 257 monolayer materials. Lastly, we found that the trends in elastic constants for bulk and their monolayer counterparts can be very different. All the computational results are made publicly available at easy-to-use websites: https://www.ctcms.nist.gov/∼knc6/JVASP.html and https://jarvis.nist.gov/. Our dataset can be used to identify stiff and flexible materials for industrial applications.
DOI: 10.25392/leicester.data.12167961
title: Martian North Pole Edificies Profiles

description: This data set contains geophysics derived data from the MOLA altimeter on board Mars Global Surveyor mission. It contains morphometric information, as well as topographic profiles from 201 edifices (positive topographic elevations) analysed from the North Polar region of Mars. Specifically, from the Scandia Cavi and Olympia Undae regions.<br><b>This data set accompanies the following paper:</b>Sánchez-Bayton, M., Tréguier, E., Herraiz, M., Martin, P., Kereszturi, A., and Sánchez-Cano, B., (2020), New Landforms in Scandia Cavi and Olympia Undae, North Polar Region of Mars. Discrimination of possible volcanoes edifices. Journal of Geophysical Research Planets, 125, (awaiting for DOI).<br><b>Abstract:</b><br>This article presents a systematic analysis of the morphology of positive topographic landforms on Olympia Undae and Scandia Cavi in the Northern circumpolar region of Mars, which are key areas for the geological evolution of the Northern Polar Cap. The study has been performed using images from Mars Express and Mars Reconnaissance Orbiter and topographic profiles from Mars Global Surveyor that have led to identifying 201 small and medium-size geologic landforms, more than 90% of them not classified before. The main morphometric parameters of these landforms have allowed to classify them into six categories: cratered cones, impact craters, ambiguous craters, simple domes, peaked domes, and irregular structures. Their possible relation to impact, aeolian, glacial and volcanic processes, as well as to mix-interaction between all of these processes is also discussed. We conclude that for those landforms formed by internal processes, the volcanic origin is one of the most probable processes leading to their formation. The small and medium-size positive topographic features in the Northern polar regions of Mars provide valuable information on the surface evolution during the last part of the geological history of Mars.<br>
DOI: 10.6084/m9.figshare.12168114.v1
title: Elastic properties of bulk and low-dimensional materials using van der Waals density functional

description: In this work we present a high-throughput first-principles study of elastic properties of bulk and monolayer materials mainly using the vdW-DF-optB88 functional. We discuss the trends on the elastic response with respect to changes in dimensionality. We identify a relation between exfoliation energy and elastic constants for layered materials that can help to guide the search for vdW bonding in materials. We also predicted a few novel materials with auxetic behavior. The uncertainty in structural and elastic properties due to the inclusion of vdW interactions is discussed. We investigated 11 067 bulk and 257 monolayer materials. Lastly, we found that the trends in elastic constants for bulk and their monolayer counterparts can be very different. All the computational results are made publicly available at easy-to-use websites: https://www.ctcms.nist.gov/∼knc6/JVASP.html and https://jarvis.nist.gov/. Our dataset can be used to identify stiff and flexible materials for industrial applications.
DOI: 10.25392/leicester.data.12167961.v1
title: Martian North Pole Edificies Profiles

description: This data set contains geophysics derived data from the MOLA altimeter on board Mars Global Surveyor mission. It contains morphometric information, as well as topographic profiles from 201 edifices (positive topographic elevations) analysed from the North Polar region of Mars. Specifically, from the Scandia Cavi and Olympia Undae regions.<br><b>This data set accompanies the following paper:</b>Sánchez-Bayton, M., Tréguier, E., Herraiz, M., Martin, P., Kereszturi, A., and Sánchez-Cano, B., (2020), New Landforms in Scandia Cavi and Olympia Undae, North Polar Region of Mars. Discrimination of possible volcanoes edifices. Journal of Geophysical Research Planets, 125, (awaiting for DOI).<br><b>Abstract:</b><br>This article presents a systematic analysis of the morphology of positive topographic landforms on Olympia Undae and Scandia Cavi in the Northern circumpolar region of Mars, which are key areas for the geological evolution of the Northern Polar Cap. The study has been performed using images from Mars Express and Mars Reconnaissance Orbiter and topographic profiles from Mars Global Surveyor that have led to identifying 201 small and medium-size geologic landforms, more than 90% of them not classified before. The main morphometric parameters of these landforms have allowed to classify them into six categories: cratered cones, impact craters, ambiguous craters, simple domes, peaked domes, and irregular structures. Their possible relation to impact, aeolian, glacial and volcanic processes, as well as to mix-interaction between all of these processes is also discussed. We conclude that for those landforms formed by internal processes, the volcanic origin is one of the most probable processes leading to their formation. The small and medium-size positive topographic features in the Northern polar regions of Mars provide valuable information on the surface evolution during the last part of the geological history of Mars.<br>
DOI: 10.6084/m9.figshare.12167880
title: ActDES – a Curated Actinobacterial Database for Evolutionary Studies - Extracted sequences for BLAST Database

description: ActDES – a Curated Actinobacterial Database for Evolutionary StudiesExtracted Sequences for Blast databasea. BLAST nucleotide database (.fasta file)b. BLAST protein database (.fasta file)
DOI: 10.6084/m9.figshare.12167880.v1
title: ActDES – a Curated Actinobacterial Database for Evolutionary Studies - Extracted sequences for BLAST Database

description: ActDES – a Curated Actinobacterial Database for Evolutionary StudiesExtracted Sequences for Blast databasea. BLAST nucleotide database (.fasta file)b. BLAST protein database (.fasta file)
DOI: 10.6084/m9.figshare.12167859
title: Oeller Quinoa

description: Data from Oeller et al paper on Lygus population dynamics in quinoa
DOI: 10.6084/m9.figshare.12167853
title: Gpx1/2-DKO ileum microbiome by groups annotated OTU abundance data

description: This file contains the ileum microbiomes of 35 day old Gpx1/2-DKO mice, mice treated with antibiotics from 22-35 days of age (metronidazole, vancomycin, streptomycin) and non-DKO mice (Gpx1+/-Gpx2-/- or Gpx1-/-Gpx2+/-) annotated by group.<br>mRNA levels of Duox2 and Nox1 in the same groups
DOI: 10.6084/m9.figshare.12167859.v1
title: Oeller Quinoa

description: Data from Oeller et al paper on Lygus population dynamics in quinoa
DOI: 10.6084/m9.figshare.12167853.v1
title: Gpx1/2-DKO ileum microbiome by groups annotated OTU abundance data

description: This file contains the ileum microbiomes of 35 day old Gpx1/2-DKO mice, mice treated with antibiotics from 22-35 days of age (metronidazole, vancomycin, streptomycin) and non-DKO mice (Gpx1+/-Gpx2-/- or Gpx1-/-Gpx2+/-) annotated by group.
DOI: 10.6084/m9.figshare.12167751
title: Supporting Data from Effect of urban habitat use on parasitism in mammals: a meta-analysis

description: Urban and non-urban prevalence data supporting this study, along with host and parasite characteristics, citations, and urban locations.
DOI: 10.6084/m9.figshare.12167751.v1
title: Supporting Data from Effect of urban habitat use on parasitism in mammals: a meta-analysis

description: Urban and non-urban prevalence data supporting this study, along with host and parasite characteristics, citations, and urban locations.
DOI: 10.6084/m9.figshare.12167853.v2
title: Gpx1/2-DKO ileum microbiome by groups annotated OTU abundance data

description: This file contains the ileum microbiomes of 35 day old Gpx1/2-DKO mice, mice treated with antibiotics from 22-35 days of age (metronidazole, vancomycin, streptomycin) and non-DKO mice (Gpx1+/-Gpx2-/- or Gpx1-/-Gpx2+/-) annotated by group.
DOI: 10.6084/m9.figshare.12167724
title: ActDES – a Curated Actinobacterial Database for Evolutionary Studies - CVS genome annotation files

description: CVS genome annotation files including the FASTA files of nucleotide and amino acids sequences ( .cvs files)
DOI: 10.6084/m9.figshare.12167745
title: Supporting R Code from Effect of urban habitat use on parasitism in mammals: a meta-analysis

description: R code supporting the meta-analysis
DOI: 10.6084/m9.figshare.12167853.v4
title: Gpx1/2-DKO ileum microbiome by groups annotated OTU abundance data

description: This file contains the ileum microbiomes of 35 day old Gpx1/2-DKO mice, mice treated with antibiotics from 22-35 days of age (metronidazole, vancomycin, streptomycin) and non-DKO mice (Gpx1+/-Gpx2-/- or Gpx1-/-Gpx2+/-) annotated by group.<br>mRNA levels of Duox2 and Nox1 in the same groups
DOI: 10.6084/m9.figshare.12167724.v1
title: ActDES – a Curated Actinobacterial Database for Evolutionary Studies - CVS genome annotation files

description: CVS genome annotation files including the FASTA files of nucleotide and amino acids sequences ( .cvs files)
DOI: 10.6084/m9.figshare.12167853.v3
title: Gpx1/2-DKO ileum microbiome by groups annotated OTU abundance data

description: This file contains the ileum microbiomes of 35 day old Gpx1/2-DKO mice, mice treated with antibiotics from 22-35 days of age (metronidazole, vancomycin, streptomycin) and non-DKO mice (Gpx1+/-Gpx2-/- or Gpx1-/-Gpx2+/-) annotated by group.