cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hn89r5
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Hololeion maximowiczii Kitam.)"
 ]
}

 The dataset includes 182 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027627-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1285/i22402772a8p597
title: Il genere letterario delle Institutiones: dagli Antonini ai Severi
DOI: 10.1285/i22402772a8p598
title: Spätantike Quellen für das Studium der senatus consulta: Wege zwischen Jurisprudenz und Historiographie
DOI: 10.6084/m9.figshare.25858495
title: Distance models

description: This folder contains:the plant-insect interactions recorded for the three time points of April (1), June (2) and August (3) 2016, from which we calculated the Horn-Morisita niche dissimilarity indices.the insect virus normalized read numbers matrices between our focal 5 bee species (<i>Apis mellifera</i>, <i>Bombus </i><i>terrestris</i>, <i>Bombus lapidarius</i>, <i>Bombus hortorum</i> and <i>Bombus pascuorum</i>), from which we calculated the virome dissimilarity indices for the three time points. VirINS files for insect viruses, number 1 for April, 2 for June, 3 for August.the plant virus normalized read numbers matrices between our focal 5 bee species (<i>Apis mellifera</i>, <i>Bombus </i><i>terrestris</i>, <i>Bombus lapidarius</i>, <i>Bombus hortorum</i> and <i>Bombus pascuorum</i>), from which we calculated the virome dissimilarity indices for the three time points. VirPLANT files for insect viruses, number 1 for April, 2 for June, 3 for August.the mitochondrial gene COI sequence alignment for the 5 bee species.the R script used to test the effect of host ecological niche dissimilarity (Horn-Morisita), the host phylogenetic distance (using DNADist method to calculate the nucleotide distance between aligned sequences) and phenology (time points) on virome dissimilarity.<br>
DOI: 10.6084/m9.figshare.25858495.v1
title: Distance models

description: This folder contains:the plant-insect interactions recorded for the three time points of April (1), June (2) and August (3) 2016, from which we calculated the Horn-Morisita niche dissimilarity indices.the insect virus normalized read numbers matrices between our focal 5 bee species (<i>Apis mellifera</i>, <i>Bombus </i><i>terrestris</i>, <i>Bombus lapidarius</i>, <i>Bombus hortorum</i> and <i>Bombus pascuorum</i>), from which we calculated the virome dissimilarity indices for the three time points. VirINS files for insect viruses, number 1 for April, 2 for June, 3 for August.the plant virus normalized read numbers matrices between our focal 5 bee species (<i>Apis mellifera</i>, <i>Bombus </i><i>terrestris</i>, <i>Bombus lapidarius</i>, <i>Bombus hortorum</i> and <i>Bombus pascuorum</i>), from which we calculated the virome dissimilarity indices for the three time points. VirPLANT files for insect viruses, number 1 for April, 2 for June, 3 for August.the mitochondrial gene COI sequence alignment for the 5 bee species.the R script used to test the effect of host ecological niche dissimilarity (Horn-Morisita), the host phylogenetic distance (using DNADist method to calculate the nucleotide distance between aligned sequences) and phenology (time points) on virome dissimilarity.<br>
DOI: 10.1285/i22402772a8p602
title: Le Declamazioni maggiori pseudo-quintilianee nella Roma imperiale. Contesti, tecnica, ricezione
DOI: 10.6084/m9.figshare.25858489
title: Data and scripts for Venn diagram

description: Data and scripts to generate the Venn diagram showing overlap in virus composition between honeybees and bumblebees, and between meta-transcriptomes and small-RNA sequencing.
DOI: 10.6084/m9.figshare.25858489.v1
title: Data and scripts for Venn diagram

description: Data and scripts to generate the Venn diagram showing overlap in virus composition between honeybees and bumblebees, and between meta-transcriptomes and small-RNA sequencing.
DOI: 10.6084/m9.figshare.25858483
title: Small RNA-seq screening for viral sequences

description: Output files of small RNA sequences screen for viral reads (using CoverM and the same viral assembly targets as for meta-transcriptomes). One file for each small RNA-seq library, an additional table that provides the final names of viral assemblies used in the article (file named 'reference names viruses'), and the list of viral assemblies in FAS format (file named 'Viral assemblies for mapping').
DOI: 10.6084/m9.figshare.25858483.v1
title: Small RNA-seq screening for viral sequences

description: Output files of small RNA sequences screen for viral reads (using CoverM and the same viral assembly targets as for meta-transcriptomes). One file for each small RNA-seq library, an additional table that provides the final names of viral assemblies used in the article (file named 'reference names viruses'), and the list of viral assemblies in FAS format (file named 'Viral assemblies for mapping').
DOI: 10.6084/m9.figshare.25858378
title: Meta-transcriptome screening for viral sequences

description: This folder contains 17 individual meta-transcriptome library output files from virus screening with CoverM, one data table with compiled and normalized (by viral target sequence length and transcriptome depth) read numbers for each viral target and libraries (file named 'Normalized Log Viromes'), the list of viral assemblies (FAS format) used for screening meta-transcriptomes (file named 'Viral assemblies for mapping'), and a table with the final names of viral assemblies used in the article (file named 'reference names viruses'). In addition, the text file (named 'BeeViromeRscript') shows the R script used to perform the analyses, including heat maps, PERMANOVA and NMDS plots.
DOI: 10.6084/m9.figshare.25858378.v1
title: Meta-transcriptome screening for viral sequences

description: This folder contains 17 individual meta-transcriptome library output files from virus screening with CoverM, one data table with compiled and normalized (by viral target sequence length and transcriptome depth) read numbers for each viral target and libraries (file named 'Normalized Log Viromes'), the list of viral assemblies (FAS format) used for screening meta-transcriptomes (file named 'Viral assemblies for mapping'), and a table with the final names of viral assemblies used in the article (file named 'reference names viruses'). In addition, the text file (named 'BeeViromeRscript') shows the R script used to perform the analyses, including heat maps, PERMANOVA and NMDS plots.
DOI: 10.6084/m9.figshare.27888144
title: Bai_et.al_data

description: We investigate the drivers and barriers for diversity recovery process after ceasing a decade N addition.
DOI: 10.6084/m9.figshare.27888144.v1
title: Bai_et.al_data

description: We investigate the drivers and barriers for diversity recovery process after ceasing a decade N addition.
DOI: 10.6084/m9.figshare.25855897.v1
title: Bee-virus bipartite networks

description: This folder contains datasets for both meta-transcriptomes and small RNA sequences, including for both normalized read numbers for each viral targets and libraries, including taxonomic classification of viruses, and R scripts to generate the bipartite networks, perform network modularity analyses and calculate diversity metrics.
DOI: 10.6084/m9.figshare.25855897
title: Bee-virus bipartite networks

description: This folder contains datasets for both meta-transcriptomes and small RNA sequences, including for both normalized read numbers for each viral targets and libraries, including taxonomic classification of viruses, and R scripts to generate the bipartite networks, perform network modularity analyses and calculate diversity metrics.
DOI: 10.1285/i22402772a8p608
title: Geschäfte und Liebesschwüre: Verbindlichkeit von Versprechen in Recht und Literatur
DOI: 10.25345/c5n29pj8t
title: MassIVE MSV000096495 - The juxtamembrane domain of StkP is phosphorylated and influences cell division in Streptococcus pneumoniae
title: Membrane eukaryotic-like Ser/Thr protein-kinases play a pivotal role in different aspects of bacterial physiology. In contrast to the diversity of their extracellular domains, their cytoplasmic catalytic domains are highly conserved. However, the function of a long juxtamembrane domain (JMD), which connects the catalytic domain to the transmembrane helix, remains elusive. In this study, we investigated the function of the JMD of the Ser/Thr protein-kinase StkP in cell division of Streptococcus pneumoniae. We observed that the deletion of the JMD did not affect StkP kinase activity. However, it impaired the ability of StkP to phosphorylate its endogenous substrates, which resulted in significant cell morphogenesis defects. Furthermore, multiple threonine residues were identified as being phosphorylated in the JMD. To investigate the functional significance of these phosphorylation sites, we conducted an integrative analysis, combining structural biology, proteomics and bacterial cell imaging. Our results revealed that the phosphorylation of the JMD did not affect the phosphorylation of StkP substrates. However, we observed that it influenced the timing of StkP localization at the division septum and the dynamics of cell constriction. We further demonstrated that phosphorylation of the JMD facilitated the recruitment of several cell division proteins, suggesting that it is required for the assembly of the division machinery at the division septum. In conclusion, this study demonstrates that the function of the JMD of StkP is modulated by phosphorylation and critical for the cell division of S. pneumoniae. These observations may serve as a model for understanding the regulatory function of other bacterial Ser/Thr protein-kinases.
DOI: 10.25345/c5h98zr4p
title: MassIVE MSV000096496 - TEST1-LIPID PEROXIDATION clinical test
title: The level of oxidized lipids during mouse aging was detected to elucidate the biological mechanism of aging
DOI: 10.1285/i22402772a8p611
title: Essere padri, essere patres in Roma antica. Poteri, immagini, rappresentazioni
DOI: 10.1285/i22402772a8p614
title: Cittadinanza e nazione in prospettiva storica
DOI: 10.6084/m9.figshare.27888210
title: Additional file 3 of Chemical quantification of N-acyl alanine methyl ester (NAME) production and impact on temporal gene expression patterns in Roseovarius tolerans EL-164

description: Supplementary Material 3: Excel file containing a table of all 187 significantly differentially expressed genes displayed in Figure 6 and the individual expression plots for each DE gene.
DOI: 10.6084/m9.figshare.27888210.v1
title: Additional file 3 of Chemical quantification of N-acyl alanine methyl ester (NAME) production and impact on temporal gene expression patterns in Roseovarius tolerans EL-164

description: Supplementary Material 3: Excel file containing a table of all 187 significantly differentially expressed genes displayed in Figure 6 and the individual expression plots for each DE gene.
DOI: 10.1285/i22402772a8p619
title: Volti del femminile in Roma antica. V Ciclo di seminari della Sezione di Lecce dell'AIST
DOI: 10.6084/m9.figshare.27888261
title: Additional file 4 of Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides

description: Supplementary Material 4: Table S1. Statistics of paired-end sequenced reads produced, along with the total number of aligned reads on the B73 Reference Genome v4, for each biological replicate. C, control; I, inoculated.
DOI: 10.6084/m9.figshare.27888261.v1
title: Additional file 4 of Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides

description: Supplementary Material 4: Table S1. Statistics of paired-end sequenced reads produced, along with the total number of aligned reads on the B73 Reference Genome v4, for each biological replicate. C, control; I, inoculated.
DOI: 10.6084/m9.figshare.27888264
title: Additional file 5 of Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides

description: Supplementary Material 5: Table S2. Raw counts for each gene in each biological replicate (indicated by number 1, 2, 3) across the eight MAGIC maize founder lines. C, control; I, inoculated.
DOI: 10.6084/m9.figshare.27888264.v1
title: Additional file 5 of Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides

description: Supplementary Material 5: Table S2. Raw counts for each gene in each biological replicate (indicated by number 1, 2, 3) across the eight MAGIC maize founder lines. C, control; I, inoculated.
DOI: 10.6084/m9.figshare.27888267
title: Additional file 6 of Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides

description: Supplementary Material 6: Table S3. Differentially Expressed Genes analysis obtained using the edgeR R package. Each sheet addresses the three biological questions raised in this study. In DEG columns, it is indicated whether a gene is differentially expressed based on the convention of this analysis, where a gene is considered differentially expressed if it meets statistical significance (FDR &lt; 0.05) and a Fold Change threshold (|log2FC| &gt; 1).
DOI: 10.6084/m9.figshare.27888273
title: Additional file 8 of Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides

description: Supplementary Material 8: Table S5. List of the 91 hub genes in the Treated–Network, belonging to the 19 modules significantly associated with the severity phenotype and showing a correlation greater than 0.6. For the meaning of each column, refer to the caption of Table S4.
DOI: 10.6084/m9.figshare.27888267.v1
title: Additional file 6 of Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides

description: Supplementary Material 6: Table S3. Differentially Expressed Genes analysis obtained using the edgeR R package. Each sheet addresses the three biological questions raised in this study. In DEG columns, it is indicated whether a gene is differentially expressed based on the convention of this analysis, where a gene is considered differentially expressed if it meets statistical significance (FDR &lt; 0.05) and a Fold Change threshold (|log2FC| &gt; 1).
DOI: 10.6084/m9.figshare.27888270
title: Additional file 7 of Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides

description: Supplementary Material 7: Table S4. Network properties for Control-Network (first sheet) and Treated-Network (second sheet). MM, Module Membership, i.e. the correlation of the gene expression profile with the module eigengene of the given module; kTotal, whole network connectivity, defined as the sum of connection strengths of a gene with the other network genes, in other words it measures how correlated a gene is with all other network genes; kWithin, intramodular connectivity, which measures how connected, or co-expressed, a given gene is with respect to the genes of a given module; kOut = kTotal - kWithin; kDiff = kWithin - kOut; GS.severity = Gene Significance for the severity phenotype, i.e. correlation between the gene expression and the trait.
DOI: 10.1285/i22402772a8p622
title: Seneca Padre e la storiografia riemersa
DOI: 10.6084/m9.figshare.27888270.v1
title: Additional file 7 of Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides

description: Supplementary Material 7: Table S4. Network properties for Control-Network (first sheet) and Treated-Network (second sheet). MM, Module Membership, i.e. the correlation of the gene expression profile with the module eigengene of the given module; kTotal, whole network connectivity, defined as the sum of connection strengths of a gene with the other network genes, in other words it measures how correlated a gene is with all other network genes; kWithin, intramodular connectivity, which measures how connected, or co-expressed, a given gene is with respect to the genes of a given module; kOut = kTotal - kWithin; kDiff = kWithin - kOut; GS.severity = Gene Significance for the severity phenotype, i.e. correlation between the gene expression and the trait.
DOI: 10.6084/m9.figshare.27888273.v1
title: Additional file 8 of Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides

description: Supplementary Material 8: Table S5. List of the 91 hub genes in the Treated–Network, belonging to the 19 modules significantly associated with the severity phenotype and showing a correlation greater than 0.6. For the meaning of each column, refer to the caption of Table S4.
DOI: 10.6084/m9.figshare.27888276
title: Additional file 9 of Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides

description: Supplementary Material 9: Table S6. List of putative candidate genes for Fusarium verticillioides resistance in the genomic regions containing QTL for FSR.
DOI: 10.6084/m9.figshare.27888315.v1
title: Supplementary Material for: Treatment of Chronic-Relapsing Pitted Keratolysis with Glycopyrronium Bromide Cream: case report

description: Introduction: Pitted keratolysis (PK) is a superficial bacterial infection located almost exclusively on the soles. The most important predisposing factor is hyperhidrosis. PK is characterized by small, isolated or confluent, crateriform, noninflammatory pits. Maceration and malodor are the two most important signs and symptoms. The therapy of PK is very often unsatisfactory. Case Presentation: Two patients with chronic-relapsing PK were successfully treated with a cream containing 1% glycopyrronium bromide, a new topical anticholinergic with anti-hyperhidrosis action. Conclusions: Although our experience is currently based on only two patients, glycopyrronium bromide cream can be taken into consideration for prevention of chronic-relapsing PK.
DOI: 10.15468/dl.6gs7za
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Trends in upward shift of alpine plants"
 ]
}

 The dataset includes 360 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027630-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1285/i22402772a8p626
title: Procopio Antemio imperatore di Roma
DOI: 10.6084/m9.figshare.27888338
title: Additional file 1 of Infectious keratoconjunctivitis in European bison (Bison bonasus) in Poland: risk factors, epidemiology and anatomopathological changes with analysis of potential role of Thelazia nematodes in the disease development

description: Additional file 1. Morphometric measurements of corneal layers. Morphometric measurements of the height of anterior corneal epithelium, Bowman's membrane, substantia propria, Descemet's membrane, and number of cells in the anterior epithelium and comparison of measurements between groups of animals showing different severity of changes.
DOI: 10.6084/m9.figshare.27888338.v1
title: Additional file 1 of Infectious keratoconjunctivitis in European bison (Bison bonasus) in Poland: risk factors, epidemiology and anatomopathological changes with analysis of potential role of Thelazia nematodes in the disease development

description: Additional file 1. Morphometric measurements of corneal layers. Morphometric measurements of the height of anterior corneal epithelium, Bowman's membrane, substantia propria, Descemet's membrane, and number of cells in the anterior epithelium and comparison of measurements between groups of animals showing different severity of changes.
DOI: 10.6084/m9.figshare.27888341
title: Additional file 2 of Infectious keratoconjunctivitis in European bison (Bison bonasus) in Poland: risk factors, epidemiology and anatomopathological changes with analysis of potential role of Thelazia nematodes in the disease development

description: Additional file 2. Evaluation protocol of histopathological changes of the cornea and conjunctiva. Evaluation protocol of histopathological changes of the cornea and conjunctiva.
DOI: 10.6084/m9.figshare.27888341.v1
title: Additional file 2 of Infectious keratoconjunctivitis in European bison (Bison bonasus) in Poland: risk factors, epidemiology and anatomopathological changes with analysis of potential role of Thelazia nematodes in the disease development

description: Additional file 2. Evaluation protocol of histopathological changes of the cornea and conjunctiva. Evaluation protocol of histopathological changes of the cornea and conjunctiva.
DOI: 10.6084/m9.figshare.27888350
title: Additional file 2 of Alteration of ceruloplasmin in patients with malaria: a systematic review and meta-analysis of observational studies

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.27888350.v1
title: Additional file 2 of Alteration of ceruloplasmin in patients with malaria: a systematic review and meta-analysis of observational studies

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.27888353
title: Additional file 3 of Alteration of ceruloplasmin in patients with malaria: a systematic review and meta-analysis of observational studies

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.27888353.v1
title: Additional file 3 of Alteration of ceruloplasmin in patients with malaria: a systematic review and meta-analysis of observational studies

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.27169194.v1
title: Table S5, Summary of YK1 VFs, ARGs and anti-metal resistance genes

description: Table S5, Summary of YK1 VFs, ARGs and anti-metal resistance genes
DOI: 10.1285/i22402772a8p629
title: Il XXIV Forum dell'Association of Young Legal Historians
DOI: 10.1285/i22402772a8p633
title: Abstract
DOI: 10.1285/i22402772a8p641
title: Indice delle fonti
DOI: 10.1285/i22402772a8p667
title: Norme redazionali
DOI: 10.4121/0d0ef8aa-43d9-46ab-8afd-e02b76f2469a
title: Data and scripts underlying the PhD thesis: Parametrically Activated Interactions in Circuit Quantum Electrodynamical Systems

description: The relevant data for the PhD thesis of Jacob Koenig. This includes raw measurement data, measurement scripts, and notebooks for producing plots included in the thesis. GHz frequency superconducting quantum circuits were parametrically driven and measured at cryogenic temperatures and the data (transmission/reflection coefficients, power spectral densities, IQ) were saved to .dat files. All scripts and notebooks are written in Python, with the exception of one notebook which is written in Julia.
DOI: 10.4121/0d0ef8aa-43d9-46ab-8afd-e02b76f2469a.v1
title: Data and scripts underlying the PhD thesis: Parametrically Activated Interactions in Circuit Quantum Electrodynamical Systems

description: The relevant data for the PhD thesis of Jacob Koenig. This includes raw measurement data, measurement scripts, and notebooks for producing plots included in the thesis. GHz frequency superconducting quantum circuits were parametrically driven and measured at cryogenic temperatures and the data (transmission/reflection coefficients, power spectral densities, IQ) were saved to .dat files. All scripts and notebooks are written in Python, with the exception of one notebook which is written in Julia.
DOI: 10.6084/m9.figshare.24862827.v3
title: Supplemental Table S1-S5

description: Supplemental Table S1-S5
DOI: 10.1285/i22402772a8p670
title: Colophon