cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7530851.v1
title: Co-expression in subiculum brain region

description: This co-expression data set is computed over samples related to subiculum brain region using data sets from Allen Human Brain Atlas H0351.2001, H0351.2002, H0351.1009, H0351.1012, H0351.1015, H0351.1016.It is a part of HEterogeneous Network-based data set for Alzheimer's disease (HENA) that brings together Alzheimer's disease related data from well known public collections, as well as novel data sets generated by the members of AgedBrainSYSBIO consortium.
DOI: 10.6084/m9.figshare.7931885.v1
title: gVCF_HG02583

description: 1000 Genomes gVCF mapped to hs37d5 for HG02583. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/b55r8ybmdp
title: COMSOL Model for: Langmuir-Based Modeling Produces Steady Two-Dimensional Simulations of Capacitive Deionization via Relaxed Adsorption-Flow Coupling

description: A COMSOL model implementing the relaxed adsorption-flow coupling is attached here. The model includes an implementation for the Langmuir model and the Randles circuit. In the former case, the model parameters generate the adsorption within the program. In the latter case, the adsorption comes from an interpolation function of externally computed data. The file includes a study note for fitting the model parameters to experimental data.
DOI: 10.17632/s2w7rjwz49
title: CO2Wounds-V2: Extended Chronic Wounds Dataset From Leprosy Patients

description: This dataset comprises 607 labeled images (for training and validation) and 157 unlabeled images (for testing) of chronic wounds collected using traditional smartphone cameras by medical staff during daily sessions of wound treatment for leprosy patients in a hospital in Colombia. This dataset aims to help advance the development and evaluation of image segmentation models for chronic wounds.
DOI: 10.6084/m9.figshare.11827821.v1
title: Brain Boundary condition stimulus pairs

description: MUA and LFP from a laminar electrode implanted in or near mouse barrel cortex during whisker stimulation.<br>Pairs of recordings from 1) brain surface submerged in artificial CSF 2) dried brain surface<br>
DOI: 10.6084/m9.figshare.13089107.v1
title: Supplementary Material for: A Targeted Multiomics Approach to Identify Biomarkers Associated with Rapid eGFR Decline in Type 1 Diabetes

description: <b><i>Background:</i></b> Individuals with type 1 diabetes (T1D) demonstrate varied trajectories of estimated glomerular filtration rate (eGFR) decline. The molecular pathways underlying rapid eGFR decline in T1D are poorly understood, and individual-level risk of rapid eGFR decline is difficult to predict. <b><i>Methods:</i></b> We designed a case-control study with multiple exposure measurements nested within 4 well-characterized T1D cohorts (FinnDiane, Steno, EDC, and CACTI) to identify biomarkers associated with rapid eGFR decline. Here, we report the rationale for and design of these studies as well as results of models testing associations of clinical characteristics with rapid eGFR decline in the study population, upon which “omics” studies will be built. Cases (<i>n</i> = 535) and controls (<i>n</i> = 895) were defined as having an annual eGFR decline of ≥3 and &lt;1 mL/min/1.73 m<sup>2</sup>, respectively. Associations of demographic and clinical variables with rapid eGFR decline were tested using logistic regression, and prediction was evaluated using area under the curve (AUC) statistics. Targeted metabolomics, lipidomics, and proteomics are being performed using high-resolution mass-spectrometry techniques. <b><i>Results:</i></b> At baseline, the mean age was 43 years, diabetes duration was 27 years, eGFR was 94 mL/min/1.73 m<sup>2</sup>, and 62% of participants were normoalbuminuric. Over 7.6-year median follow-up, the mean annual change in eGFR in cases and controls was −5.7 and 0.6 mL/min/1.73 m<sup>2</sup>, respectively. Younger age, longer diabetes duration, and higher baseline HbA1c, urine albumin-creatinine ratio, and eGFR were significantly associated with rapid eGFR decline. The cross-validated AUC for the predictive model incorporating these variables plus sex and mean arterial blood pressure was 0.74 (95% CI: 0.68–0.79; <i>p</i> &lt; 0.001). <b><i>Conclusion:</i></b> Known risk factors provide moderate discrimination of rapid eGFR decline. Identification of blood and urine biomarkers associated with rapid eGFR decline in T1D using targeted omics strategies may provide insight into disease mechanisms and improve upon clinical predictive models using traditional risk factors.
DOI: 10.6084/m9.figshare.13573658.v3
title: Data set 4 - Orthogroups

description: 47,266 orthogroups obtained through orthology inference using 73 top-quality and taxonomically diverse proteomes. They are provided into three separate folders (two-algae, one-alga, zero-algae) according to the classification described in the note and performed with classify-mcl-out.pl (see YAML configuration file provided in the config folder).<br>
DOI: 10.6084/m9.figshare.14462214.v1
title: Dataset: Effect of Lean Manufacturing Tools on the Company's Environmental Performance

description: This dataset contain 239 cases for the survey entitled: Effect of Lean Manufacturing Tools on the Company's Environmental Performance, were 17 lean manufacturing tools are analyzed and social, economic and environmental sustainability.Dataset is in SAV extension and can be open using SPSS software. <br><br>
DOI: 10.6084/m9.figshare.24906093.v2
title: Integrative analysis of the metabolome and transcriptome provides insights into the mechanisms of Lignan biosynthesis in <i>Herpetospermum pedunculosum</i><i> </i>(Ser.) C. B. Clarke

description: Herpetospermum pedunculosum (Ser.) C. B. Clarke is a traditional Chinese herbal medicine that relies heavily on the lignans with antioxidant and hepatoprotective functions found in its dried ripe seeds (Herpetospermum caudigerum). However, little is known about the regulatory mechanisms of lignan biosynthesis in H. pedunculosum. Herein, we used metabolome (non-targeted UHPLC-MS/MS) to identify key metabolites, which are involved in the lignan production during green mature (GM) and yellow mature (YM) stages of the H. pedunculosum. Seeds of the Herpetospermum pedunculosum (Ser.) C. B. Clarke are green at the green mature stage (30 days after pollination, 30 DAP) and black at the yellow mature stage (60 days after pollination, 60 DAP).
DOI: 10.6084/m9.figshare.28518143.v1
title: <b>Economic feasibility of agroforestry</b>

description: This database contains detailed calculations and analysis of the economic feasibility of implementing an agroforestry system that integrates carbon sequestration mechanisms. It includes data on the potential financial performance of agroforestry systems, considering the revenues from carbon credits and the economic value generated through the sequestration of atmospheric carbon dioxide (CO₂) by forest and agricultural practices
DOI: 10.17632/7vdby39yst
title: Data containing Thelaziasis in Cattle

description: This data contains bovine thelaziasis in Ethiopia
DOI: 10.17632/m4bp9wjnf9
title: Tree-SDN-DDoS Defense Dataset

description: The "TreeSDN-DDoS Defense Dataset" is meticulously formulated to address the distinctive challenges associated with detecting Distributed Denial of Service (DDoS) attacks within Software-Defined Networking (SDN) frameworks, with a specific focus on Tree topology configurations. This dataset encompasses a broad spectrum of network traffic patterns, incorporating both legitimate operational flows and those indicative of DDoS activities, thereby establishing itself as a vital resource for the inception, evaluation, and refinement of innovative DDoS detection methodologies.

Designed to complement the Mininet emulator's capabilities for SDN scenarios, the dataset includes an array of detailed network interaction descriptors such as packet rates, dimensions, and classifications; volume of network flows; and protocol types. Each entry within the dataset is precisely categorized, employing labels to differentiate "normal" (Label = 0) network traffic from that characteristic of "DDoS" assaults (Label = 1), thus facilitating the application of supervised learning techniques and promoting exhaustive analytical investigations.

Furthermore, the dataset is noted for its emphasis on 35 critical network vulnerabilities crucial for the identification of DDoS breaches, serving as a comprehensive repository for cybersecurity practitioners and scholars aiming to bolster SDN defenses against these incursions. The Tree topology, typically utilized in Wide Area Networks (WANs) and expansive organizational networks for interconnecting various departments or sites, is recognized for its hierarchical organization that significantly enhances network manageability, scalability, and fault isolation capabilities. Consequently, the "TreeSDN-DDoS Defense Dataset" is particularly pertinent for deployment in settings where the inherent benefits of the Tree topology—such as a well-defined hierarchy, streamlined data oversight, and the capacity for network segment isolation for troubleshooting and security enhancement—are paramount.
DOI: 10.25446/oxford.22888838.v1
title: Marion L. Bloom

description: Marion L. BloomWriter, nurse, and, briefly, literary agent. JJ received a letter dated 4 May 1917 from her, offering to represent him. He thought that "L. Bloom" , as he named the agent to John Quinn, was male. She opened her literary agency in early 1917 and ran it for about a year out of an apartment in New York. Though not Jewish, in a letter from 1973 she tantalizingly wrote that she was "spoken of as a Jewess because I'm small and dark" (In Defense of Marion: The Love of Marion Bloom and H. L. Mencken, ed. Edward A. Martin [Athens: University of Georgia Press, 1996], xxix). Michael Groden and William Brockman
DOI: 10.6084/m9.figshare.20007059.v1
title: Air pollution and respiratory diseases: ecological time series

description: ABSTRACT CONTEXT AND OBJECTIVE: Exposure to air pollutants is one of the factors responsible for hospitalizations due to respiratory diseases. The objective here was to estimate the effect of exposure to particulate matter (such as PM2.5) on hospitalizations due to certain respiratory diseases among residents in Volta Redonda (RJ). DESIGN AND SETTING: Ecological time series study using data from Volta Redonda (RJ). METHODS: Data on hospital admissions among residents of Volta Redonda (RJ), between January 1, 2012, and December 31, 2012, due to pneumonia, acute bronchitis, bronchiolitis and asthma, were analyzed. Daily data on PM2.5 concentrations were estimated through the CCATT-BRAMS model. The generalized additive Poisson regression model was used, taking the daily number of hospitalizations to be the dependent variable and the PM2.5 concentration to be the independent variable, with adjustment for temperature, relative humidity, seasonality and day of the week, and using lags of zero to seven days. Excess hospitalization and its cost were calculated in accordance with increases in PM2.5 concentration of 5 µg/m3. RESULTS: There were 752 hospitalizations in 2012; the average concentration of PM2.5 was 17.2 µg/m3; the effects of exposure were significant at lag 2 (RR = 1.017), lag 5 (RR = 1.022) and lag 7 (RR = 1,020). A decrease in PM2.5 concentration of 5 µg/m3 could reduce admissions by up to 76 cases, with a decrease in spending of R$ 84,000 a year. CONCLUSION: The findings from this study provide support for implementing public health policies in this municipality, which is an important steelmaking center.
DOI: 10.6084/m9.figshare.21737303.v9
title: Continuous odor profile monitoring to study olfactory navigation in small animals

description: Dataset for analysis and demo code for publication: "Continuous odor profile monitoring to study olfactory navigation in small animals" Chen et al. 2022
DOI: 10.6084/m9.figshare.24705258.v1
title: FinalData.csv

description: Only a subset of patients with severe emphysema qualify for lung volume reduction surgery or endobronchial valves. We previously demonstrated that Stereotactic Ablative Radiotherapy (SABR) of lung tumors reduces lung volume in treated lobes by creating localized lung fibrosis. We aimed to determine the safety and, secondarily, explore the efficacy of Stereotactic Irradiation for Lung Volume Reduction (SILVR) in patients with severe emphysema.
DOI: 10.6084/m9.figshare.26196551.v1
title: 免疫功能、抗氧化能力和激素levels.xlsx指标的原始数据

description: 本文主要阐述了酵母培养对蒙古公羊羔生长性能、免疫功能、抗氧化能力和激素水平的影响，系统分析了酵母培养如何改善蒙古公羊羔的生长性能和免疫功能。
DOI: 10.17632/x9bn2dv5jz
title: Data for: Comparative studies of two Lower Cambrian sedimentary rock profiles from the northern Tarim Basin, NW China: Implications for their biomass development and organic matter accumulation

description: All the data concerning the manuscript work.
DOI: 10.6084/m9.figshare.28660709.v1
title: UCM 187.51 digital model and image set

description: UCM 187.51 pterosaur tracksMorrison Formation, Starr SpringKimmeridgian-Tithonian, Upper Jurassic
DOI: 10.6084/m9.figshare.7970039.v2
title: BeeWatch dataset 2011-2015

description: Bumblebee sightings submitted to the BeeWatch project by members of the general public between 2011 and 2015. Identifications checked by experts against photos submitted with the sighting records.
DOI: 10.6084/m9.figshare.21901962.v1
title: Source data

description: Source data resolution: 5 arc minutes, lat (2160) x lon (4320) <br> <strong>Cropland abandonment based on satellite data from European Space Agency Climate Change Initiative (ESA-CCI) and Copernicus Climate Change Service (C3S).</strong> <br> Filename: ABANDO~2.NC AC: Historical (1992-2018) abandoned cropland in hectares <br> Filename: abandoned_cropland_1992_2018_fraction_5arcmin.nc AC: Historical (1992-2018) abandoned cropland as fraction of grid cell area <br> Filename: expanded_abandonedCropland_5min_prt4.nc AC+AC4: Historical (1992-2018) and future abandoned cropland (with four cell extension) as fraction of grid cell area <br> Filename: expanded_abandonedCropland_5min_prt8.nc AC+AC8: Historical (1992-2018) and future abandoned cropland (with eight cell extension) as fraction of grid cell area <br> <strong>Aboveground carbon in abandoned cropland between 1992 and 2021</strong> <br> Filename: ABOVEG~1.NC <br> Accumulated aboveground carbon in abandoned cropland between 1992 and 2021 in ton carbon. Natural regrowth data from Cook-Patton et al. 2020 and satellite data from European Space Agency Climate Change Initiative (ESA-CCI) and Copernicus Climate Change Service (C3S). Accumulated aboveground carbon is estimated from year of abandonment. <br> Reference: https://doi.org/10.1038/s41586-020-2686-x <br> <strong>Afforestation data from the Global Forest Model (G4M)</strong> <br> Filename: G4M_20~1.NC Afforestation data from G4M Carbon sequestration yields in ton carbon ha-1 yr-1 2020 to 2100 for SSP2-RCP4.5, non-coniferous forest <br> Filename: G4M_20~2.NC Afforestation data from G4M Carbon sequestration yields in ton carbon ha-1 yr-1 2020 to 2100 for SSP2-RCP4.5, coniferous forest <br>
DOI: 10.6084/m9.figshare.24485689.v1
title: EEGET-ALS Dataset

description: This dataset consisting of electroencephalogram and eye tracking recordings obtained from six patients with amyotrophic lateral sclerosis (ALS) in a locked-in state and one hundred seventy healthy individuals. Data from ALS patients was recorded multiple times at their homes, while data from healthy individuals was recorded once in a laboratory setting. For each data recording, the experimental design involved nine recording sessions per participant, each corresponding to a common human action or demand.
DOI: 10.6084/m9.figshare.25674741.v1
title: Data for Cheng et al, Nature Communications (2024)

description: Datasets used to generate:Figure 2cFigure 2dFigure 2e (2 sets)Figure 3b (2 sets, pump comb spectrum and broadened spectrum)Figure 3cFigure 4b (3 sets corresponding to 3 pump wavelengths)Figure 4cFigure S1 (2 sets, in conjunction with data in Figure 2e)Figure S3 (4 sets, for 0 to 3 MHz detuning)Figure S4 (7 sets, for 1.0 to 5.0 mW pump power)
DOI: 10.6084/m9.figshare.6931088.v1
title: Electric Transmission and Distribution Infrastructure Imagery Dataset

description: <b>Overview</b>The dataset contains fully annotated electric transmission and distribution infrastructure for approximately 321 sq km of high resolution satellite and aerial imagery from around the world. The imagery and associated infrastructure annotations span 14 cities and 5 continents, and were selected to represent diversity in human settlement density (i.e. rural vs urban), terrain type, and development index. This dataset may be of particular interest to those looking to train machine learning algorithms to automatically identify energy infrastructure in satellite imagery or for those working on domain adaptation for computer vision. Automated algorithms for identifying electricity infrastructure in satellite imagery may assist policy makers identify the best pathway to electrification for unelectrified areas.<br><b>Data Sources</b>This dataset contains data sourced from the LINZ Data Service licensed for reuse under CC BY 4.0. <br>This dataset also contained extracts from the SpaceNet dataset:SpaceNet on Amazon Web Services (AWS). “Datasets.” The SpaceNet Catalog. Last modified April 30, 2018 (link below).<br>Other imagery data included in this dataset are from the Connecticut Department of Energy and Environmental Protection and the U.S. Geological Survey. <br>Links to each of the imagery data sources are provided below as well as the link to the annotation tool and the github repository that provides tools for using these data.<br><b>Acknowledgements</b>This dataset was created as part of the Duke University Data+ project, "Energy Infrastructure Map of the World" (link below) in collaboration with the Information Initiative at Duke and the Duke University Energy Initiative.
DOI: 10.6084/m9.figshare.7635977.v1
title: In_silico_typing_of_Telford_Figshare.pptx

description: The complete genome Telford 9.2, an IS<i>1311</i> type S IS<i>900</i> RFLP type S1 was verified by in silico strain typing.
DOI: 10.17632/5r3vxrhtb9
title: Spatial Analysis of Bicycle Safety in urban transport using GIS: A Case Study of Wrocław

description: The raw data used to prepare a research paper. 
Data description:
- 2024_detail_incidents - data on traffic incidents in 2024 in Wroclaw, shp format
- cycling density, format Excel
- traffic density on roads, format Excel
- załącznik 4.1 formularz pomiaru ruchu drogowego, Appendix 4.1 traffic measurement form, format Excel
- załącznik 5.1 formularz pomiaru ruchu drogowego, Appendix 5.1 traffic measurement form, format Excel
Data source: https://bip.um.wroc.pl/artykul/565/70659/kompleksowe-badania-ruchu-we-wroclawiu-i-otoczeniu-kbr-2024
https://geoportal.wroclaw.pl/en/resources/?zasob=trasy_rowerowe
DOI: 10.17632/dfjsc94s7c
title: Form_IDI

description: SEMI-STRUCTURED INTERVIEWS GUIDE TO EVALUATE THE PERCEPTIONS ABOUT MALARIA AMONG BRAZILIAN GOLD MINERS IN AN AMAZON BORDER AREA: PERSPECTIVES FOR MALARIA ELIMINATION STRATEGIES.
DOI: 10.17632/j9yn4t7nw3
title: LBM-DEM data for the infiltration characteristics of slurries in porous media

description: Based on the DEM-LBM coupled method, we built a simplified model to simulate the process of slurry infiltrating porous media. The simulation result indicated that the fine particles had stronger movement performance than large particles. Thus, larger particles generally stopped in the porous media surface and formed a filter cake mixture with the later fine particles. Whereas, fine particles composed blockage inside the porous media. In addition, the applied fluid pressure had a close relationship with the slurry infiltration. On the one hand, higher pressure could promote slurry to infiltrate porous media. On the other hand, the pressure could also make the media clog faster by the slurry. There was a pressure threshold to make the slurry infiltrate rapidly without immediate blockage. To further investigate the media clogging process of this simulation, we classified the blockage in the media as single clogging, connecting clogging, and retention clogging according to the mechanical stability and particle composition. At the same time, we also provided a detailed description to explain the clogging process during the slurry infiltration.
DOI: 10.17632/k6395ns5pk
title: Itaconate transporter SLC13A3 confers immunotherapy resistance via alkylation-mediated stabilization of PD-L1

description: Original western blotting data
DOI: 10.6084/m9.figshare.19189307.v1
title: SCALLOP ACE2 GWAS Summary Statistics

description: This dataset contains the full genome-wide association meta analysis summary statistics of the SCALLOP Consortium plasma ACE2 GWAS (Yang et al. 2022, Circulation).
DOI: 10.6084/m9.figshare.22231585.v1
title: Nariman Ghader-Supporting Information files-Study Data Set .xlsx

description: The data collection instrument used in this study was composed of three sections. Firstly, a detailed participant information sheet and an informed consent form were mandatory fields to be completed before participants had access to the anonymous questionnaire. Secondly, parents were asked to respond to 26 questions which included family sociodemographic data as well as information on the student’s general health status, experience with COVID-19 infection, school learning, and mental health-related behaviors. Thirdly, students were also requested to answer a series of 8 questions that explored their feelings and their current mental health status using a collection of standardized scales (MFQ-Child self-report, SCARED-Child Version, and CRIES). Data were analyzed using IBM SPSS Statistics for Windows version 26 (IBM Corp., Armonk, N.Y., USA). The number of submitted questionnaires was 3762. However, post-data cleaning, the number was reduced to 3745. Mean and standard deviation (SD) were calculated for continuous variables while proportions (%) and frequencies (n) were reported for categorical variables. A multivariate analysis was conducted to examine the associations between mental illness symptoms and related factors by using the Pearson’s product-moment correlation coefficient test. Multiple linear regression analyses were performed to examine the effects of selected demographic and COVID-19 related factors on students’ mental illness symptoms scores. A <em>P</em>-value &lt; 0.05 was considered statistically significant in all analyses.
DOI: 10.6084/m9.figshare.28091810.v1
title: Archaeointensity results of Vadnagar artefacts through Thellier GUI software

description: Archaeointensity measurement data of Vadnagar artefacts are provided in the accompanying "Vadnagar Thellier GUI software results.zip" file, which contains the necessary files for analysis using the Thellier GUI software.Cite: Pradnya Mohite, K Deenadayalan, B V Lakshmi, Abhijit Ambekar, A P Dimri, Archaeointensity study of Vadnagar artefacts: insights into geomagnetic field variation in India during the past 4250 yr, <i>Geophysical Journal International</i>, Volume 241, Issue 2, May 2025, Pages 1391–1412, https://doi.org/10.1093/gji/ggaf100
DOI: 10.6084/m9.figshare.6066575.v1
title: Edge information of Chilean power grid without tap

description: Edge data of Chilean power grid 'without tap' version. Edge lists are recorded with ID of nodes. It also includes the length, capacity information. Please, see the corresponding node file to see the detail informaion of the nodes.
DOI: 10.17632/vn4h8gg48z
title: Ancestral transoceanic colonization and recent population reduction in annual killifish from the Seychelles archipelago

description: Processed dataset associated with NCBI Bioproject #PRJNA702252, scripts at https://github.com/melop/killigenomics/tree/master/pachypanchax