cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12859762
title: Redescription and evolutionary relationships of the Cuban endemic monotypic genus <i>Holguinia</i> Evans, 1955 (Lepidoptera, Hesperiidae, Hesperiinae)

description: We redescribe the Cuban endemic monotypic skipper genus <i>Holguinia</i> Evans and assess its phylogenetic position. Based on a 5640<b> </b>bp dataset consisting of one mitochondrial and eight nuclear genes, we recovered <i>Holguinia</i> as a member of the Hesperiina, one of the subtribes of the mostly Neotropical Hesperiini, the largest tribe within the subfamily Hesperiinae. The ancestor of <i>Holguinia</i> split from continental relatives ∼15 Ma and likely reached the proto Cuban islands by dispersal over water. The genus seems to be one of the oldest Hesperiini lineages of our sampling and is not closely related to the other genera inhabiting the islands. <i>Holguinia</i> is also quite distinctive in its morphology. The underside of wings splashed with bright emerald scaling is unique among the Hesperiidae and the long ductus bursae of the female genitalia easily distinguish this genus from its close relatives.
DOI: 10.6084/m9.figshare.13372892
title: An updated lineage-based tribal classification of Apiaceae subfamily Apioideae with special focus on Iranian genera

description: Molecular phylogenetic studies have had major impacts on the delineation of higher-level taxa in many plant groups. Apiaceae subfamily Apioideae, its largest subfamily, is in the process of major systematic rearrangements owing to these studies. Iran, with more than one fourth of all apioid genera, is a biodiversity hotspot for this subfamily, though the sampling of these taxa from this region has been insufficient. Currently, 111 apioid genera are recognized in Iran of which 18 including five endemics are not presented or are under-represented in previous phylogenetic studies. We used the sequences of nuclear ribosomal <i>internal transcribed spacer</i> (ITS) and chloroplast <i>rps16</i> intron (<i>rps16</i>) regions from 325 and 149 accessions, respectively, representing most of the known genera of Apioideae from Iran. Twenty-nine ITS and 26 <i>rps16</i> sequences were newly generated for this study. Phylogenetic trees were reconstructed using Bayesian inference, Maximum likelihood, and Maximum parsimony methods. The results assign the endemic genera <i>Ergocarpon</i> to Echinophoreae, <i>Lomatopodium</i> to Selineae, <i>Froriepia</i> and <i>Oliveria</i> to Pyramidoptereae, and <i>Stenotaenia</i> to Tordylieae. In addition, <i>Ormosciadium</i>, morphologically characterized by moniliform and inflated mericarp margins, is assigned to Tordylieae. <i>Neocryptodiscus persicus</i> is shown to be a synonym of <i>Prangos persica</i>. The previous placement of <i>Heptaptera</i> in the <i>Physospermopsis</i> clade is not correct and it should be moved to the <i>Opopanax</i> clade. Morphological characters deemed to be of high diagnostic value are the shape of leaf segments, presence of tubers, colour of petals, and mericarp features including shape, presence of lateral or dorsal wings, and type of compression and indumentum. A diagnostic key to 19 tribes, nine subtribes and other major clades compatible with these taxonomic ranks and an updated list of genera of Apioideae occurring in Iran with their tribal and subtribal position is provided.
DOI: 10.6084/m9.figshare.13399505.v2
title: Taxonomic status of genera <i>Nodularia</i>, <i>Middendorffinaia</i> and <i>Inversiunio</i> (Bivalvia: Unionidae) from South-East Asia: morphometric, genetic and GenBank data

description: Recent investigations of East Asian freshwater mussel genera <i>Nodularia</i>, <i>Middendorffinaia</i> and <i>Inversiunio</i> confirmed validity of the taxa, while their composition and taxonomic uncertainty concerning classification of these genera within a specific subfamily are still in question. The aim of the present study is to clarify the taxonomy and systematics of <i>Nodularia</i> and <i>Middendorffinaia</i> genera from the Russian Far East and <i>Inversiunio</i> from Japan, using a multiple dataset approach that combines morphology of glochidia, detailed conchological analyses with morphometry of adult and glochidial shells, and a molecular technique involving <i>COI</i> barcoding marker. As a result, three genetically distinct and highly divergent lineages were recognized confirming the existence of three distinct genera. The existence of five <i>Nodularia</i> species in Southeast Asia is shown. One of the sequences is shown to be incorrectly assigned to <i>N. jourdyi</i>, while in fact it also represents <i>N. douglasiae</i>, according to the BIN system. Existence of a single <i>Nodularia</i> species, namely <i>N. douglasiae</i>, and a single <i>Middendorffinaia</i> species, namely <i>M. mongolica</i>, in the Russian Far East is supported. We conclude that so-called comparatory species <i>Nodularia amurensis</i>, <i>N. schrencki</i>, and <i>N. vladivostokensis</i> are junior synonyms of the species <i>Nodularia douglasiae</i>; the comparatory species <i>Middendorffinaia ussuriensis</i> and <i>M. dulkeitiana</i> are junior synonyms of the species <i>Middendorffinaia mongolica</i>. Within <i>Inversiunio</i> specimens from Japan four species were recognized based on types of glochidial microsculpture of shells and genetic data. Gene sequences of <i>Inversiunio verrucosus</i>, endemic to the Seomjingang River basin in South Korea, and <i>I. yanagawensis</i> from Kyushu Island in Japan are very similar and they can be regarded as the same species, with <i>Inversiunio verrucosus</i> as a junior synonym of <i>Inversiunio yanagawensis</i>. Mussels from Honshu Island first referred to <i>I. yanagawensis</i> are shown to be a separate species.
DOI: 10.6084/m9.figshare.13372892.v1
title: An updated lineage-based tribal classification of Apiaceae subfamily Apioideae with special focus on Iranian genera

description: Molecular phylogenetic studies have had major impacts on the delineation of higher-level taxa in many plant groups. Apiaceae subfamily Apioideae, its largest subfamily, is in the process of major systematic rearrangements owing to these studies. Iran, with more than one fourth of all apioid genera, is a biodiversity hotspot for this subfamily, though the sampling of these taxa from this region has been insufficient. Currently, 111 apioid genera are recognized in Iran of which 18 including five endemics are not presented or are under-represented in previous phylogenetic studies. We used the sequences of nuclear ribosomal <i>internal transcribed spacer</i> (ITS) and chloroplast <i>rps16</i> intron (<i>rps16</i>) regions from 325 and 149 accessions, respectively, representing most of the known genera of Apioideae from Iran. Twenty-nine ITS and 26 <i>rps16</i> sequences were newly generated for this study. Phylogenetic trees were reconstructed using Bayesian inference, Maximum likelihood, and Maximum parsimony methods. The results assign the endemic genera <i>Ergocarpon</i> to Echinophoreae, <i>Lomatopodium</i> to Selineae, <i>Froriepia</i> and <i>Oliveria</i> to Pyramidoptereae, and <i>Stenotaenia</i> to Tordylieae. In addition, <i>Ormosciadium</i>, morphologically characterized by moniliform and inflated mericarp margins, is assigned to Tordylieae. <i>Neocryptodiscus persicus</i> is shown to be a synonym of <i>Prangos persica</i>. The previous placement of <i>Heptaptera</i> in the <i>Physospermopsis</i> clade is not correct and it should be moved to the <i>Opopanax</i> clade. Morphological characters deemed to be of high diagnostic value are the shape of leaf segments, presence of tubers, colour of petals, and mericarp features including shape, presence of lateral or dorsal wings, and type of compression and indumentum. A diagnostic key to 19 tribes, nine subtribes and other major clades compatible with these taxonomic ranks and an updated list of genera of Apioideae occurring in Iran with their tribal and subtribal position is provided.
DOI: 10.6084/m9.figshare.13399505.v1
title: Taxonomic status of genera <i>Nodularia</i>, <i>Middendorffinaia</i> and <i>Inversiunio</i> (Bivalvia: Unionidae) from South-East Asia: morphometric, genetic and GenBank data

description: Recent investigations of East Asian freshwater mussel genera <i>Nodularia</i>, <i>Middendorffinaia</i> and <i>Inversiunio</i> confirmed validity of the taxa, while their composition and taxonomic uncertainty concerning classification of these genera within a specific subfamily are still in question. The aim of the present study is to clarify the taxonomy and systematics of <i>Nodularia</i> and <i>Middendorffinaia</i> genera from the Russian Far East and <i>Inversiunio</i> from Japan, using a multiple dataset approach that combines morphology of glochidia, detailed conchological analyses with morphometry of adult and glochidial shells, and a molecular technique involving <i>COI</i> barcoding marker. As a result, three genetically distinct and highly divergent lineages were recognized confirming the existence of three distinct genera. The existence of five <i>Nodularia</i> species in Southeast Asia is shown. One of the sequences is shown to be incorrectly assigned to <i>N. jourdyi</i>, while in fact it also represents <i>N. douglasiae</i>, according to the BIN system. Existence of a single <i>Nodularia</i> species, namely <i>N. douglasiae</i>, and a single <i>Middendorffinaia</i> species, namely <i>M. mongolica</i>, in the Russian Far East is supported. We conclude that so-called comparatory species <i>Nodularia amurensis</i>, <i>N. schrencki</i>, and <i>N. vladivostokensis</i> are junior synonyms of the species <i>Nodularia douglasiae</i>; the comparatory species <i>Middendorffinaia ussuriensis</i> and <i>M. dulkeitiana</i> are junior synonyms of the species <i>Middendorffinaia mongolica</i>. Within <i>Inversiunio</i> specimens from Japan four species were recognized based on types of glochidial microsculpture of shells and genetic data. Gene sequences of <i>Inversiunio verrucosus</i>, endemic to the Seomjingang River basin in South Korea, and <i>I. yanagawensis</i> from Kyushu Island in Japan are very similar and they can be regarded as the same species, with <i>Inversiunio verrucosus</i> as a junior synonym of <i>Inversiunio yanagawensis</i>. Mussels from Honshu Island first referred to <i>I. yanagawensis</i> are shown to be a separate species.
DOI: 10.25345/c54b87
title: MassIVE MSV000086668 - Halo-BRMS1 1-229 expressed in HEK293 cells
title: Affinity purification of BRMS1 1-229 for proteomic analysis
DOI: 10.5286/isis.e.rb2010193-2
title: Comparison of the structural behaviour of two flavins at the electrode/electrolyte interface under applied potential.

description: This proposal concerns the structural behaviour of two flavins that act as mediators between electroactive biofilms and electrodes by transferring electrons from the bacterial cell membrane to the electrode surface. This is currently the rate-limiting step in bioelectrochemical devices that use these light-harvesting biofilms to generate electricity and the nature of the biofilm/electrode interaction remains poorly understood. Specifically, it has been proposed from previous electrochemical measurements that the two flavins (that differ only by one phosphate group) may form very different structures at the electrode surface and may behave differently when a potential is applied. However, structural analysis of these systems is lacking and so neutron reflectometry offers the perfect technique to verify or reassess these predictions in situ using a custom-made electrochemical cell.
DOI: 10.34740/kaggle/dsv/1825779
title: German News Dataset
DOI: 10.5281/zenodo.4425685
title: Fluorescence video capture of human tear film

description: These images are from anonymized video captures of fluorescence of the human tear film. There are two videos, designated 18-46-38.000-xxx.png and 19-41-48.000-xx.png, where "xxx" or "xx" is a sequence number. Each image is 1412x2120.
DOI: 10.34740/kaggle/dsv/1825808
title: US counties COVID 19 dataset
DOI: 10.5517/ccdc.csd.cc26w4mw
title: CCDC 2051878: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Sabrina Kronig, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w4nx
title: CCDC 2051879: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Sabrina Kronig, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w4x5
title: CCDC 2051887: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w4y6
title: CCDC 2051888: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w4z7
title: CCDC 2051889: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w509
title: CCDC 2051890: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w51b
title: CCDC 2051891: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w52c
title: CCDC 2051892: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w53d
title: CCDC 2051893: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w54f
title: CCDC 2051894: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w55g
title: CCDC 2051895: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w56h
title: CCDC 2051896: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w57j
title: CCDC 2051897: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w58k
title: CCDC 2051898: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w59l
title: CCDC 2051899: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26w5bm
title: CCDC 2051900: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Constantin-Gabriel Daniliuc, Birte Haberlag, Matthias Tamm|2020|CSD Communication|||
DOI: 10.13011/m3-thgc-jj93
title: Extension twinning in rolled Mg alloy WE43
DOI: 10.5281/zenodo.4425740
title: Training data from Reinforced SciNet

description: <strong>Summary:</strong> The results from the training of neural networks in v2 of Reinforced SciNet, published partially in v2 of the paper Operationally meaningful representations of physical systems in neural networks. <strong>File description:</strong> results.txt - The results from the training during<em> reinforcement learning</em>. results_loss.txt - The loss from the training during <em>representation learning</em>. selection.txt - The noise level of latent neurons during <em>representation learning</em>. <strong>Parameters: Reinforcement Learning</strong> Server parameters 21 workers, 2 predictors, 1 trainer each 3M episodes Training parameters glow: 0.1 gamma: 0.01 softmax: 0.5 learning rate: 0.00005 reward clipping: 1.0e-7 Network parameters DPS model:<br> {'env1': [128, 128, 128, 128, 64, 32],<br> 'env2': [128, 128, 128, 128, 64, 32],<br> 'env3': [128, 128, 128, 128, 64, 32]} <strong>Parameters: Representation Learning</strong> Server parameters 21 workers, 2 predictors, 1 trainer each 5M episodes Training parameters learning rate: 0.0001 reward clipping: 1.0e-7 selection discount: 0.04 minimization discount: 0.02 ae discount: 10.0 agent discount: 1. reward rescaling: 10 predicted actions: 1 training data: 200K Network parameters Prediction model:<br> {'env1': [64, 128, 128, 128, 128, 64, 32],<br> 'env2': [64, 128, 128, 128, 128, 64, 32],<br> 'env3': [64, 128, 128, 128, 128, 64, 32]} Encoder model: [128, 128, 64, 32] Decoder model: [32, 64, 128, 128, 128]
DOI: 10.15468/4w4qjj
title: Key to South American genera of Acanthocinini (Coleoptera, Cerambycidae, Lamiinae) without erect setae on elytra; synonymies, transferences, revalidation, and notes on genera with erect setae on elytra

description: This dataset contains the digitized treatments in Plazi based on the original journal article Monn?, Miguel A., Santos-Silva, Antonio, Monn?, Marcela L. (2020): Key to South American genera of Acanthocinini (Coleoptera, Cerambycidae, Lamiinae) without erect setae on elytra; synonymies, transferences, revalidation, and notes on genera with erect setae on elytra. Zootaxa 4863 (1): 1-65, DOI: https://doi.org/10.11646/zootaxa.4863.1.1
DOI: 10.5281/zenodo.4036498
title: WD50K

description: <pre><strong>WD50K dataset: An hyper-relational dataset derived from Wikidata statements</strong>. The dataset is constructed by the following procedure based on the [Wikidata RDF dump](https://dumps.wikimedia.org/wikidatawiki/20190801/) of August 2019: - A set of seed nodes corresponding to entities from FB15K-237 having a direct mapping in Wikidata (<strong>P646</strong> "Freebase ID") is extracted from the dump. - For each seed node, all statements whose <strong>main</strong> object and <strong>qualifier</strong> values corresponding to <strong>wikibase:Item</strong> are extracted from the dump. - All literals are filtered out from the qualifiers of the above obtained statements. - All the entities from the dataset which have less than two mentions are dropped. The statements corresponding to the dropped entities are also dropped. - The remaining statements are randomly split into the train, test, and validation sets. - All statements from train and validation sets are removed which share the same main triple <strong>(s,p,o)</strong> with test statements. - WD50k_33, WD50k_66, WD50k_100 are then sampled from the above statements. Here 33, 66, 100 represents the amount of hyper-relational facts (statements with qualifiers) in the dataset. The table below provides some basic statistics of our dataset and its three further variations: | Dataset | Statements | w/Quals (%) | Entities | Relations | E only in Quals | R only in Quals | Train | Valid | Test | |-------------|------------|----------------|----------|-----------|-----------------|-----------------|---------|--------|--------| | WD50K | 236,507 | 32,167 (13.6%) | 47,156 | 532 | 5460 | 45 | 166,435 | 23,913 | 46,159 | | WD50K (33) | 102,107 | 31,866 (31.2%) | 38,124 | 475 | 6463 | 47 | 73,406 | 10,668 | 18,133 | | WD50K (66) | 49,167 | 31,696 (64.5%) | 27,347 | 494 | 7167 | 53 | 35,968 | 5,154 | 8,045 | | WD50K (100) | 31,314 | 31,314 (100%) | 18,792 | 279 | 7862 | 75 | 22,738 | 3,279 | 5,297 | </pre> <pre><strong>When using the dataset please cite</strong>: </pre> <pre><code> @inproceedings{StarE, title={Message Passing for Hyper-Relational Knowledge Graphs}, author={Galkin, Mikhail and Trivedi, Priyansh and Maheshwari, Gaurav and Usbeck, Ricardo and Lehmann, Jens}, booktitle={EMNLP}, year={2020} } </code></pre> <pre> For any further questions, please contact: <strong>mikhail.galkin@iais.fraunhofer.de</strong></pre>
description: Funding sources - SPEAKER : 01MK20011A - JOSEPH : Fraunhofer Zukunftsstiftung - Cleopatra : 812997 - ML2R: 01 15 18038 A/B/C - MLwin: 01IS18050 D/F - ScADS: 01IS18026A
DOI: 10.5281/zenodo.4036497
title: WD50K

description: <pre><strong>WD50K dataset: An hyper-relational dataset derived from Wikidata statements</strong>. The dataset is constructed by the following procedure based on the [Wikidata RDF dump](https://dumps.wikimedia.org/wikidatawiki/20190801/) of August 2019: - A set of seed nodes corresponding to entities from FB15K-237 having a direct mapping in Wikidata (<strong>P646</strong> "Freebase ID") is extracted from the dump. - For each seed node, all statements whose <strong>main</strong> object and <strong>qualifier</strong> values corresponding to <strong>wikibase:Item</strong> are extracted from the dump. - All literals are filtered out from the qualifiers of the above obtained statements. - All the entities from the dataset which have less than two mentions are dropped. The statements corresponding to the dropped entities are also dropped. - The remaining statements are randomly split into the train, test, and validation sets. - All statements from train and validation sets are removed which share the same main triple <strong>(s,p,o)</strong> with test statements. - WD50k_33, WD50k_66, WD50k_100 are then sampled from the above statements. Here 33, 66, 100 represents the amount of hyper-relational facts (statements with qualifiers) in the dataset. The table below provides some basic statistics of our dataset and its three further variations: | Dataset | Statements | w/Quals (%) | Entities | Relations | E only in Quals | R only in Quals | Train | Valid | Test | |-------------|------------|----------------|----------|-----------|-----------------|-----------------|---------|--------|--------| | WD50K | 236,507 | 32,167 (13.6%) | 47,156 | 532 | 5460 | 45 | 166,435 | 23,913 | 46,159 | | WD50K (33) | 102,107 | 31,866 (31.2%) | 38,124 | 475 | 6463 | 47 | 73,406 | 10,668 | 18,133 | | WD50K (66) | 49,167 | 31,696 (64.5%) | 27,347 | 494 | 7167 | 53 | 35,968 | 5,154 | 8,045 | | WD50K (100) | 31,314 | 31,314 (100%) | 18,792 | 279 | 7862 | 75 | 22,738 | 3,279 | 5,297 | </pre> <pre><strong>When using the dataset please cite</strong>: </pre> <pre><code> @inproceedings{StarE, title={Message Passing for Hyper-Relational Knowledge Graphs}, author={Galkin, Mikhail and Trivedi, Priyansh and Maheshwari, Gaurav and Usbeck, Ricardo and Lehmann, Jens}, booktitle={EMNLP}, year={2020} } </code></pre> <pre> For any further questions, please contact: <strong>mikhail.galkin@iais.fraunhofer.de</strong></pre>
description: Funding sources - SPEAKER : 01MK20011A - JOSEPH : Fraunhofer Zukunftsstiftung - Cleopatra : 812997 - ML2R: 01 15 18038 A/B/C - MLwin: 01IS18050 D/F - ScADS: 01IS18026A
DOI: 10.15468/sq6avj
title: Gigantochloa glabrata (Poaceae, Bambusoideae), a new bamboo species from Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Xu, Zu-Chang, Liu, Jing-Xia, Li, De-Zhu (2021): Gigantochloa glabrata (Poaceae, Bambusoideae), a new bamboo species from Yunnan, China. PhytoKeys 171: 37-45, DOI: http://dx.doi.org/10.3897/phytokeys.171.59562, URL: http://dx.doi.org/10.3897/phytokeys.171.59562
DOI: 10.6084/m9.figshare.13540895
title: hhblits_omp

description: hhblits_omp query database
DOI: 10.6084/m9.figshare.13540895.v1
title: hhblits_omp

description: hhblits_omp query database