cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5816705
title: VEP_workflow_simulatedData

description: This dataset is used for the paper: Wang, H. E., Woodman, M., Triebkorn, P., Lemarechal, J.-D., Jha, J., Dollomaja, B., Vattikonda, A. N., Sip, V., Medina Villalon, S., Hashemi, M., Guye, M., Makhalova, J., Bartolomei, F., & Jirsa, V. (2023). Delineating epileptogenic networks using brain imaging data and personalized modeling in drug-resistant epilepsy. <em>Science Translational Medicine</em>, <em>15</em>(680). https://doi.org/10.1126/scitranslmed.abp8982 Code to read and process this dataset: https://zenodo.org/record/7573382#.Y9PN9C8w3RI It includes both anatomical and simulated data for one example patient. The anatomical data includes the personalized brain surface meshes, gain matrix from SEEG electrodes and source brain regions, and global structural connectivity matrices. The functional data includes the neural field simulation on both vertices and SEEG sensors. The datasets are used in BIDS format. The codes to read and use this dataset are available in https://github.com/HuifangWang/VEP_INS_workflow.
description: This work is funded through the European Union's Horizon 2020 Framework Programme for Research and Innovation under the Specific Grant Agreement No. 945539 (Human Brain Project SGA3) and the French National Research Agency (ANR) as part of the second "Investissements d'Avenir" program (ANR-17-RHUS-0004, EPINOV).
description: {"references": ["Wang, H. E., Woodman, M., Triebkorn, P., Lemarechal, J.-D., Jha, J., Dollomaja, B., Vattikonda, A. N., Sip, V., Medina Villalon, S., Hashemi, M., Guye, M., Makhalova, J., Bartolomei, F., & Jirsa, V. (2023). Delineating epileptogenic networks using brain imaging data and personalized modeling in drug-resistant epilepsy. Science Translational Medicine, 15(680). https://doi.org/10.1126/scitranslmed.abp8982"]}
DOI: 10.6073/pasta/2e84258b77bb7e2a648a7f7626b896f1
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2014

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chlathamus fragilis and Balanus spp.
DOI: 10.5281/zenodo.7576058
title: TOPO Ansbach Löwen Apotheke

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/ead?ead.id=DE-611-BF-7096/ Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.34740/kaggle/dsv/4905491
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.7576059
title: TOPO Ansbach Löwen Apotheke

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/ead?ead.id=DE-611-BF-7096/ Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6073/pasta/813ad33927055e16ca94372beb884d2d
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2015

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chlathamus fragilis and Balanus spp.
DOI: 10.17031/63d3cf370be15
title: Iceland selected plankton
DOI: 10.6073/pasta/ad541f9cf82c32bb19853fd769820c2c
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2016

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chlathamus fragilis and Balanus spp.
DOI: 10.6084/m9.figshare.21790058
title: Clustering files Iteration1

description: Clustering files for figures including iteration 1 of each mixture.
DOI: 10.6084/m9.figshare.21790058.v2
title: Clustering files Iteration1

description: Clustering files for figures including iteration 1 of each mixture.
DOI: 10.6084/m9.figshare.21790058.v1
title: Clustering files Iteration1

description: Clustering files for figures including iteration 1 of each mixture.
DOI: 10.6084/m9.figshare.21790061
title: Clustering files iteration 2

description: Clustering files for each mixture iteration 2
DOI: 10.6084/m9.figshare.21790061.v1
title: Clustering files iteration 2

description: Clustering files for each mixture iteration 2
DOI: 10.6073/pasta/4af3dd0fdd1021968a9d56d199f5d182
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2017

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chlathamus fragilis and Balanus spp.
DOI: 10.5281/zenodo.7576073
title: TOPO Düsseldorf-Eller Augusta-Apotheke

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/ead?ead.id=DE-611-BF-7096/ Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.7576076
title: TOPO Düsseldorf-Eller Augusta-Apotheke

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/ead?ead.id=DE-611-BF-7096/ Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.7576079
title: TOPO Düsseldorf-Eller Augusta-Apotheke

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/ead?ead.id=DE-611-BF-7096/ Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6084/m9.figshare.21960389
title: gene annotation of Apis cerana japonica and accession ID list

description: The homologous genes were searched for in eight reference organisms (<em>Apis. mellifera</em>, <em>Homo sapiens</em>, <em>Mus musculus</em>, <em>Caenorhabditis elegans</em>, <em>Drosophila. melanogaster</em>, <em>Bombyx mori</em>, <em>Bombus terrestris</em>, and <em>Nasonia vitripennis</em>) or UniProtKB. <em>A. cerana japonica</em>-specific genes by comparison with <em>A. cerana cerana</em> or previous genome of <em>A. cerana japonica</em>.
DOI: 10.6084/m9.figshare.21960389.v3
title: gene annotation of Apis cerana japonica and accession ID list

description: The homologous genes were searched for in eight reference organisms (<em>Apis. mellifera</em>, <em>Homo sapiens</em>, <em>Mus musculus</em>, <em>Caenorhabditis elegans</em>, <em>Drosophila. melanogaster</em>, <em>Bombyx mori</em>, <em>Bombus terrestris</em>, and <em>Nasonia vitripennis</em>) or UniProtKB. <em>A. cerana japonica</em>-specific genes by comparison with <em>A. cerana cerana</em> or previous genome of <em>A. cerana japonica</em>.
DOI: 10.6084/m9.figshare.21960389.v2
title: gene annotation of Apis cerana japonica and accession ID list

description: The homologous genes were searched for in eight reference organisms (<em>Apis. mellifera</em>, <em>Homo sapiens</em>, <em>Mus musculus</em>, <em>Caenorhabditis elegans</em>, <em>Drosophila. melanogaster</em>, <em>Bombyx mori</em>, <em>Bombus terrestris</em>, and <em>Nasonia vitripennis</em>) or UniProtKB.
DOI: 10.6073/pasta/b60b4c08d4f6b19a3cc165a387d64db7
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2018

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chlathamus fragilis and Balanus spp. This year Geukensia and Oysters that settled on the poles were counted and recorded.
DOI: 10.26255/heal.cb5n-o7f8
title: SCOAP3 Greek Publications - 2021
DOI: 10.6073/pasta/5a20e1fcf74d35b7f023a2e1cd967fb9
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2019

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chlathamus fragilis and Balanus spp. This year Geukensia and Oysters that settled on the poles were counted and recorded.
DOI: 10.6073/pasta/575e9ff9fab11e21af650cb2508b0392
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2020

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chlathamus fragilis and Balanus spp. This year Geukensia and Oysters that settled on the poles were counted and recorded.
DOI: 10.5281/zenodo.7576100
title: Apotheker/in Agner, Gertrud

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-HS-3397625
DOI: 10.5281/zenodo.7576102
title: Apotheker/in Agner, Gertrud

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-HS-3397625
DOI: 10.5281/zenodo.7576103
title: Apotheker/in Agner, Gertrud

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-HS-3397625
DOI: 10.6073/pasta/9375c0ca5592e03f1e5ff8111b8af9ce
title: Long-term Barnacle Settlement Near Creekbank Plots from the Georgia Coastal Ecosystems LTER Fall Marsh Monitoring Program

description: This data set includes long-term observational data on barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean. PVC poles were deployed to passively sample barnacle settlement. Eight poles were deployed between 4-5 meters apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species occur within this estuary, only two species settled on poles: Chlathamus fragilis and Balanus spp. Beginning in 2018, Geukensia and Oysters that settled on the poles were also counted and recorded. This data set includes observations from 2013 to 2021 and will be updated annually to include the prior year observations.
DOI: 10.5281/zenodo.7576104
title: Apotheker/in Agner, Gertrud

description: Questionnaire/s and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Fragebogen und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-HS-3397625
DOI: 10.6084/m9.figshare.21967838
title: Gut microbiota of Vancouver Island marmots

description: Conservation breeding programs include translocations of animals across breeding facilities, both <em>in </em>and <em>ex situ</em>, and to/from their natural habitat. Newly reintroduced Vancouver Island marmots originating from the captive breeding program are known to experience high winter mortality. This health concern may be linked to changes in gut microbiota, which can affect metabolic rate prior to hibernation. Furthermore, captivity is known to impact the overall abundance of host-derived substrate degraders in the mammalian gut needed for hibernation. In this study, we explored the diversity of bacterial communities in the gut of captive marmots during the entire active season, both kept in captivity at <em>in situ </em>and <em>ex situ </em>facilities, as well as free-ranging marmots during the summer period. Gut microbial diversity was higher in marmots held in <em>ex situ</em> facilities, outside of their habitat range, compared to captive marmots held within their habitat range, and in the wild, and differences in composition were also observed. In the entire active season, animals kept in the <em>ex situ </em>facility had increased abundance in sulfate producers and possible cross-feeders, while an increase in amino acid metabolism, associated to fiber-degraders of <em>in situ </em>and free-ranging marmots is potentially linked to diet variation between facilities. KEGG pathways indicated that hibernation and captive location altered metabolic functions of gut microbiota of <em>Marmota vancouverensis</em>. These results confirm the interest to transfer animals held at zoos to an <em>in situ </em>facility before relocation and expand our understanding of microbiota variation around hibernation in the context of conservation biology.
DOI: 10.6073/pasta/03b8d00a0a7316254663ede777b880e5
title: Yearly survey of barnacle settlement near creekbank plots at GCE LTER study sites in October 2021

description: To characterize spatial variation in barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean, we deployed PVC poles to passive sample barnacle settlement. Eight poles were deployed between 4-5m apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species are occur within this estuary, only two species settled on poles: Chlathamus fragilis and Balanus spp. This year Geukensia and Oysters that settled on the poles were counted and recorded.
DOI: 10.6073/pasta/58a040865af317194395a99269f2ce7d
title: Survey of adult and juvenile periwinkle snail (Littoraria irrorata) density in mid-marsh and creekbank plots at GCE LTER study sites in October 2021.

description: To characterize spatial variation in the adult and juvenile density of periwinkle snails, Littoraria irrorata, within two zones in the salt marsh, the mid-marsh and creekbank, and across a gradient in salinity and distance to ocean, we surveyed snail density in October 2021. In each marsh zone at each GCE LTER permanent monitoring site, we counted the number of adult and juvenile snails in 8 creekbank and 12 mid-marsh replicate quadrats.
DOI: 10.6073/pasta/a7ceb2cf93d4a3387226e7723256bcfa
title: Fall 2021 plant monitoring survey -- biomass calculated from shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10

description: The biomass of plants surveyed in permanent plots at 10 GCE LTER sampling sites in October 2021 was estimated based on allometric relationships between biomass and shoot height and flowering status derived for each site, zone, and species in October 2002 and October 2008. Biomass was calculated for dominant species, including Spartina alterniflora, S. cynosuroides, Juncus roemerianus, and Zizaniopsis miliacea, as well as rarer species including Scirpus spp, Panicum spp. And Typha angustifolia. This data set is based on GCE plant monitoring survey data set PLT-GCEM-2111a, and allometric relationships were based on GCE data sets PLT-GCEM-0211b, PLT-GCEM-0711, and PLT-GCEM-2011.
DOI: 10.5281/zenodo.7576018
title: Prenatal Diagnosis and Postnatal Outcomes of Left Brachiocephalic Vein Abnormalities: Systematic Review

description: Gaeta G, Fesslova V, Villanacci R, Morano D, Candiani M, Pozzoni M, Papale M, Spinillo SL, Chiarello C, Cavoretto PI. Prenatal Diagnosis and Postnatal Outcomes of Left Brachiocephalic Vein Abnormalities: Systematic Review. J Clin Med. 2022 Mar 24;11(7):1805. doi: 10.3390/jcm11071805. PMID: 35407413; PMCID: PMC9000070. Abstract Abnormalities of the left brachiocephalic vein (LBCVA) are rare and poorly studied prenatally. An association with congenital heart defects (CHD), extracardiac and genetic abnormalities was described. The aim of our study was to estimate the rate and summarize the available evidence concerning prenatal diagnosis, associated anomalies, and outcomes of these anomalies. A systematic literature review was carried out selecting studies reporting on prenatal diagnosis of LBCVA, including unpublished cases from our experience. Frequencies were pooled from cohort studies to calculate prenatal incidence. Pooled proportions were obtained from all the studies including rates of associated CHD, extracardiac or genetic abnormalities and neonatal outcomes. The search resulted in the selection of 16 studies with 311 cases of LBCVA, with an incidence of 0.4% from six cohort studies. CHD occurred in 235/311 (75.6%) fetuses: 23 (7.4%) were major in cases of double, retroesophageal or subaortic course and 212 (68.2%) were minor in cases of absence (always associated with a persistent left superior vena cava) or intrathymic course. Data on other associated outcomes were scarce showing rare extracardiac anomalies (3.5%), rare genetic abnormalities (RASopathies and microdeletions associated with the retroesophageal course), and neonatal outcomes favorable in most cases, particularly in intrathymic forms.