cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/c76p-dt37
title: Parkes observations for project P1172 semester 2022OCTS_12

description: PSR J1713+0747 is an extremely stable millisecond pulsar used in global pulsar timing array campaigns as a high priority pulsar because of its strong S/N, narrow profile and long-term observation history. In April 2021, the pulsar experienced a significant event related to a change in its magnetosphere, presented as an observable change in the pulsar’s profile. Since then, the pulsar has been slowly recovering and we wish to observe it with high cadence to allow us to create a detailed time-resolved series of variations in the MSPs profile, polarisation, and other properties. Under this proposal, we wish to probe the profile recovery on daily timescales (3 times per week with 2 day intervals in between), revealing additional short timescale behaviours, indicative of changes in the magnetosphere which are not available to other telescopes in the world, thanks to the Parkes UWL. This will also allow us to determine if the magnetosphere has returned to its original configuration or is settling into a new one. Understanding the recovery of this event is key for demonstrating that such pulsars are still viable clocks for use in gravitational wave studies, and in turn, provide us with new data on how the normally stable magnetosphere of this millisecond pulsar responds to an impulsive change in state.
DOI: 10.4121/22284652
title: Systematic Quantitative Literature Review - Uncertainty assessment of Evapotranspiration Remote Sensing

description: A systematic literature review of studies assessing the uncertainty of evapotranspiration from satellite remote sensing from 2011 to 2021. The categorization and analysis of the papers were based on the types of uncertainty considered, methods used to assess uncertainty, and the context where uncertainty was assessed.
DOI: 10.4121/22284436
title: Meta-analysis of Remotely sensed Evapotranspiration validation with Eddy Covariance

description: The reported RMSE values from 317 articles that use Eddy Covariance to validate Evapotranspiration estimates from remote sensing.
DOI: 10.34740/kaggle/dsv/5212927
title: AutoXGB
DOI: 10.25919/09pf-wf35
title: Parkes observations for project P1059 semester 2020APRS_19

description: We propose to observe a sample of 22 pulsars at high Galactic latitudes with the Parkes Ultra-Wideband Low (UWL) receiver. This sample of pulsars does not have flux densities nor polarisation measured before. The goal is to characterise their wideband properties in polarisation, spectrum and interstellar scintillation. Such properties will help us develop imaging pulsar search techniques for future radio continuum surveys, such as with the Australian SKA Pathfinder (ASKAP). Wideband spectrum, polarisation and scintillation of pulsars will also be useful for studies of pulsar radiation mechanism and interstellar medium at high Galactic latitudes.
DOI: 10.15468/vzpxhx
title: Updated Checklist of Arthropods from Azores (Portugal)

description: The data we present consists in an updated checklist of the Azorean arthropods. The checklist compile known records based on published literature, unpublished data, and new records at archipelago and island levels. This publication represents the most recent information about distribution of introduced, native and endemic arthropods in the Azores archipelago. Currently the total number of terrestrial arthropod taxa (species and subspecies) in the Azores is estimated of about 2420 belonging to 14 classes, 53 orders, 440 families, 1556 genera and 2400 species and 149 individual subspecies. The most diverse orders of Azorean arthropods are: Coleoptera (585 taxa), Diptera (423 taxa), Hemiptera (338 taxa), Hymenoptera (163 taxa), Lepidoptera (159 taxa) and Araneae (133 taxa). A total of 276 endemic taxa are currently known (232 species and 44 subspecies), belonging to 8 classes and 22 orders. São Miguel, Terceira and Pico are the islands with higher number of endemic species and subspecies. Compared to the other nearest Macaronesian archipelagos (Madeira and Canaries), the Azorean arthropod fauna is characterized by a lower percentage of endemism and a high proportion of exotic introduced species.
DOI: 10.17632/tdxp6b8b64.1
title: Allergen recognition by specific effector Th2 cells enables IL-2-dependent activation of regulatory T cell responses in humans

description: Source data from Lozano-Ojalvo et al., 2022
DOI: 10.17632/b7p3k6cwjn.1
title: Symbiotic association of microalgae and plants in deep water culture system

description: In this study, microalgae culture (Chlorella vulgaris) and mint seedlings (Mentha spp.) were combined in a hydroponic system to improve plant growth. Mint seedlings were grown both in microalgae-containing and in microalgae-free trial groups, and both groups were subjected to aerated and non-aerated conditions to show the effect of aeration and microalgae co-cultivation on the mint weight and height. The plant quality was also determined with color measurements of the mint leaves. Our results have revealed the symbiotic life of the mint plant placed in the hydroponic system with microalgae and demonstrated improved mint growth and quality. This co-cultivation system is also potentially more environmentally friendly compared to growing microalgae and mint independently because of lower cost of aeration and mixing for microalgae cultivation, higher nutrient consumption efficiency, and reduced nutrient outflow.
DOI: 10.5283/epub.53197
title: Data archive of 'Scalable high-repetition-rate sub-half-cycle terahertz pulses from spatially indirect interband transitions'
DOI: 10.5283/epub.44264
title: Data archive for the article: "Josephson inductance as a probe for highly ballistic semiconductor-superconductor weak links"

description: Data for the article "Josephson inductance as a probe for highly ballistic semiconductor-superconductor weak links", loaded on arXiv (arXiv:2007.08371) and submitted for publication.
DOI: 10.6084/m9.figshare.22181926.v2
title: Data to produce the Figures in "Efficient scattering loss of energetic electrons by enhanced higher-band ECH waves observed by Van Allen Probes"

description: Electron cyclotron harmonic (ECH) waves, which are responsible for the diffuse aurora, are usually observed with the strongest intensity in the first band. Here, we present observations of enhanced higher-band ECH with wave amplitudes ~1 mV/m by Van Allen Probes. Fully thermal simulation results indicate that these waves can be locally excited by the observed electron distributions, and higher plasma densities and lower magnetic strength are beneficial for exciting the higher-band ECH. The pitch angle diffusion coefficient of the higher-band ECH can approach 10^-3 s^-1 for energetic electrons (~300 eV -- 10 keV), greater than the momentum diffusion coefficient by ~100 times. It is suggested that the enhanced higher-band ECH can also efficiently scatter these electrons into the loss cone and contribute to the diffuse aurora.
DOI: 10.6084/m9.figshare.22181926.v1
title: Data to produce the Figures in "Efficient scattering loss of energetic electrons by enhanced higher-band ECH waves observed by Van Allen Probes"

description: Electron cyclotron harmonic (ECH) waves, which are responsible for the diffuse aurora, are usually observed with the strongest intensity in the first band. Here, we present observations of enhanced higher-band ECH with wave amplitudes ~1 mV/m by Van Allen Probes. Fully thermal simulation results indicate that these waves can be locally excited by the observed electron distributions, and higher plasma densities and lower magnetic strength are beneficial for exciting the higher-band ECH. The pitch angle diffusion coefficient of the higher-band ECH can approach 10^-3 s^-1 for energetic electrons (~300 eV -- 10 keV), greater than the momentum diffusion coefficient by ~100 times. It is suggested that the enhanced higher-band ECH can also efficiently scatter these electrons into the loss cone and contribute to the diffuse aurora.
DOI: 10.5519/qd.4pnyp2qi
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.7646405
title: Food Survey for the detection of high salt intakes

description: <em><strong>Food consumption frequency survey for detection of high salt intakes. (Foods correlated with salt intake).</strong></em>
DOI: 10.5281/zenodo.7646406
title: Food Survey for the detection of high salt intakes

description: <em><strong>Food consumption frequency survey for detection of high salt intakes. (Foods correlated with salt intake).</strong></em>
DOI: 10.5281/zenodo.7759328
title: Food Survey for the detection of high salt intakes

description: <em><strong>Food consumption frequency survey for detection of high salt intakes. (Foods correlated with salt intake).</strong></em>
DOI: 10.5281/zenodo.7759331
title: Supplementary Online Content to "Alterity marking and enhancing accessibility in lexical borrowing: Meta-information techniques in the use of incipient anglicisms in French and Italian"

description: Overview of newspaper articles analysed in Sections 4 and 5 Sources of the newspaper articles Sample analyses of the use of meta-information techniques in F2 and I3
DOI: 10.5281/zenodo.7759330
title: Supplementary Online Content to "Alterity marking and enhancing accessibility in lexical borrowing: Meta-information techniques in the use of incipient anglicisms in French and Italian"

description: Overview of newspaper articles analysed in Sections 4 and 5 Sources of the newspaper articles Sample analyses of the use of meta-information techniques in F2 and I3
DOI: 10.21227/66ks-t035
title: Pituitary Tumor MRI Segmentation Dataset

description: Pituitary adenoma (PA) is one of the most common tumors of the central nervous system, accounting for about 10%-25% of all cases. Although it is generally considered to be a benign tumor, the tumor can compress important tissue structures around it and cause corresponding symptoms. And surgical treatment is the preferred treatment for pituitary adenoma. Therefore, preoperative observation on MRI is important to provide anatomical information to plan the resection and predict the prognosis. However, due to the lack of MRI annotation data of pituitary adenoma, there are limited studies on MRI automatic segmentation of pituitary adenoma through deep learning.
DOI: 10.34740/kaggle/dsv/5210524
title: Youtube Trending Video - Taiwan & Hong Kong
DOI: 10.34740/kaggle/ds/3027350
title: WaRP - Waste Recycling Plant Dataset
DOI: 10.26180/20296554.v1
title: Chapter 2. Genomic variants associated with modulating risk of anti-seizure medication induced Steven-Johnson syndrome/Toxic epidermal necrolysis.

description: This contains the data used for the genomic variant analysis. The final ASM plink file (.bim, .bed, .log, .fam) Text file to obtain perform the sub analysis All association files (.assoc) Zoomlocus code. R code for generating the QQ and manhattan pltos Race text file <br>
DOI: 10.25919/qfw9-5f77
title: Parkes observations for project P1050 semester 2022OCTS_15

description: This is a request for the observation time for the timing campaign of new pulsars discovered in the reprocessing of the low-latitude Galactic plane section of the HTRU-S survey (HTRU-S LowLat) and the Parkes Multibeam Pulsar Survey (PMPS). We have completed 90 % of the HTRU-S LowLat survey and completed zero acceleration PMPS search with GPU-based coherent acceleration search, template bank, and fast folding algorithm pipelines and now have discovered 115 previously unknown pulsars among which 20 were found in the PMPS. Interesting science can usually only be derived from a new pulsar after confirmation, and a follow-up timing campaign is carried out. At least one year of initial timing is the minimum timespan required to fully characterise any newly-discovered pulsars, essential for deriving pulsar parameters such as the characteristic age, magnetic field strength, and spin-down rate, as well as for detecting any unexpected behaviour of the pulsar which might result from emission instabilities. This project is necessary for the timing of several interesting pulsars, including binary pulsars, high DM pulsars, scattered profile pulsars, and bright ones that show emissions in larger bandwidths in the UWL band. The follow-up timing in OCTS22 will assist in completing many exciting large-term science goals. In addition, the data obtained from this timing project will allow us to obtain many auxiliary scientific results which would help us understand the nature of the interstellar medium, spectral properties as well as pulsar emission mechanism.
DOI: 10.5281/zenodo.7486338
title: Phylogenetic profile of 100 annotated low complexity proteins against the Uniprot Reference Proteome dataset

description: Phylogenetic profile of 100 human proteins with characteristic compositional bias, previously recorded by Mier et al (2020) against the Uniprot Reference Proteome, containing a total of 11297 proteomes, excluding viruses. The counts for each protein correspond to homologs found in each proteome. Detailed description of included columns: <strong>ref_proteome_identifier</strong>: The<strong> </strong>Uniprot Reference Proteome identifier <strong>ncbi_taxid</strong>: The NCBI taxonomy ID <strong>species_name</strong>: NCBI common name corresponding to taxonomy ID <strong>species_code</strong>: internal species code composed of 9 characters <strong>taxonomic domain</strong>: E/B/A for Eukaryota/Bacteria/Archaea classification of proteome
description: {"references": ["https://doi.org/10.12688/f1000research.129929.1"]}
DOI: 10.5281/zenodo.7486339
title: Phylogenetic profile of 100 annotated low complexity proteins against the Uniprot Reference Proteome dataset

description: Phylogenetic profile of 100 human proteins with characteristic compositional bias, previously recorded by Mier et al (2020) against the Uniprot Reference Proteome, containing a total of 11297 proteomes, excluding viruses.
DOI: 10.5281/zenodo.7759329
title: Phylogenetic profile of 100 annotated low complexity proteins against the Uniprot Reference Proteome dataset

description: Phylogenetic profile of 100 human proteins with characteristic compositional bias, previously recorded by Mier et al (2020) against the Uniprot Reference Proteome, containing a total of 11297 proteomes, excluding viruses. The counts for each protein correspond to homologs found in each proteome. Detailed description of included columns: <strong>ref_proteome_identifier</strong>: The<strong> </strong>Uniprot Reference Proteome identifier <strong>ncbi_taxid</strong>: The NCBI taxonomy ID <strong>species_name</strong>: NCBI common name corresponding to taxonomy ID <strong>species_code</strong>: internal species code composed of 9 characters <strong>taxonomic domain</strong>: E/B/A for Eukaryota/Bacteria/Archaea classification of proteome
description: {"references": ["https://doi.org/10.12688/f1000research.129929.1"]}
DOI: 10.5281/zenodo.7753295
title: Water quality data from Turbinator

description: Sensors to monitor water quality are operating in harsh environments since they are in frequent contact with water. The Turbinator turbidity and water level sensor developed by IVL works around this issue by using a laser beam and a camera to measure turbidity and water level without being in contact with water. It can be used for early warning of pollutants or for predictive maintenance of a city's pipeline network for waste- and stormwater. The Turbinator is easy to install or de-install for example when the battery needs to be changed or the sensor is moved to a new location. No drilling is required. The installation and un-installation can be done without entering the drain, thus avoiding otherwise necessary safety measures. The sensors measure distance from the sensor to the water and turbidity. The dataset contains the following columns: id: identifier of the Turbinator; dateobserved: timestamp of the measurement in UTC; location: Well Known Text representation of the GPS location of the Turbinator; turbidity: turbidity in NTU distance: distance between the sensor (top of the well) and the water in meters.
DOI: 10.5281/zenodo.7753294
title: Water quality data from Turbinator

description: Sensors to monitor water quality are operating in harsh environments since they are in frequent contact with water. The Turbinator turbidity and water level sensor developed by IVL works around this issue by using a laser beam and a camera to measure turbidity and water level without being in contact with water. It can be used for early warning of pollutants or for predictive maintenance of a city's pipeline network for waste- and stormwater. The Turbinator is easy to install or de-install for example when the battery needs to be changed or the sensor is moved to a new location. No drilling is required. The installation and un-installation can be done without entering the drain, thus avoiding otherwise necessary safety measures. The sensors measure distance from the sensor to the water and turbidity. The dataset contains the following columns: id: identifier of the Turbinator; dateobserved: timestamp of the measurement in UTC; location: Well Known Text representation of the GPS location of the Turbinator; turbidity: turbidity in NTU distance: distance between the sensor (top of the well) and the water in meters.
DOI: 10.5281/zenodo.7719233
title: Toy data for single-cell-nano-cut-tag

description: This dataset is the toy dataset used in the https://github.com/bartosovic-lab/single-cell-nano-cut-tag vignette. Download it to reproduce the results presented in the vignette.
DOI: 10.5281/zenodo.7719232
title: Toy data for nanoscope (scNanoCT)

description: This dataset is the toy dataset used in the https://github.com/bartosovic-lab/nanoscope vignette. Download it to reproduce the results presented in the vignette.
DOI: 10.5281/zenodo.7719349
title: Toy data for single-cell-nano-cut-tag

description: This dataset is the toy dataset used in the https://github.com/bartosovic-lab/single-cell-nano-cut-tag vignette. Download it to reproduce the results presented in the vignette.
DOI: 10.5281/zenodo.7738751
title: Toy data for nanoscope (scNanoCT)

description: This dataset is the toy dataset used in the https://github.com/bartosovic-lab/nanoscope vignette. Download it to reproduce the results presented in the vignette.
DOI: 10.5281/zenodo.7759368
title: Toy data for nanoscope (scNanoCT)

description: This dataset is the toy dataset used in the https://github.com/bartosovic-lab/nanoscope vignette. Download it to reproduce the results presented in the vignette.
DOI: 10.6084/m9.figshare.20508873
title: Integrated analysis of long non-coding RNAs and mRNA expression profiles identified potential interactions regulating melanogenesis in chicken skin

description: 1. Long non-coding RNAs (lncRNAs) play important roles in various physiological functions. However, the mechanisms underlying the regulation of lncRNAs in melanogenesis remain unclear. To determine the molecular mechanisms involved in skin melanogenesis, the present study depicted the expression profiles of lncRNAs and messenger RNAs (mRNAs) in black- (B group) and white- (W group) skinned chickens using RNA sequencing. 2. In total, 373 differentially expressed lncRNAs (DELs; 203 up-regulated and 170 down-regulated) and 253 differentially expressed genes (DEGs; 152 up-regulated and 101 down-regulated) were identified between the B and W groups. A total of eight known melanogenesis-related genes were identified (<i>KIT, TYRP1, DCT</i> (<i>TYRP2), SLC45A2, OCA2, EDNRB2, TRPM1</i> and <i>RAB38</i>). 3. Functional annotation of the co-expressed DEGs and DELs was performed using Gene Ontology (GO) and Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway analyses. The co-expressed DEGs were mainly involved in melanogenesis and the co-expressed genes of 117 and 108 DELs were significantly enriched in the melanogenesis and tyrosine metabolism pathways, respectively. 4. The DEL-DEG interaction network revealed that three lncRNAs (XR_003072387.1, XR_003075112.1, and XR_003077033.1) and <i>DCT</i> genes may have key roles in regulating melanogenesis in chicken skin. This data provides the groundwork for studying the lncRNA regulatory mechanisms of skin melanogenesis and suggested a new perspective on the modulation of melanogenesis in chicken skin based on a lncRNA-mRNA causal regulatory network.
DOI: 10.6084/m9.figshare.20508873.v2
title: Integrated analysis of long non-coding RNAs and mRNA expression profiles identified potential interactions regulating melanogenesis in chicken skin

description: 1. Long non-coding RNAs (lncRNAs) play important roles in various physiological functions. However, the mechanisms underlying the regulation of lncRNAs in melanogenesis remain unclear. To determine the molecular mechanisms involved in skin melanogenesis, the present study depicted the expression profiles of lncRNAs and messenger RNAs (mRNAs) in black- (B group) and white- (W group) skinned chickens using RNA sequencing. 2. In total, 373 differentially expressed lncRNAs (DELs; 203 up-regulated and 170 down-regulated) and 253 differentially expressed genes (DEGs; 152 up-regulated and 101 down-regulated) were identified between the B and W groups. A total of eight known melanogenesis-related genes were identified (<i>KIT, TYRP1, DCT</i> (<i>TYRP2), SLC45A2, OCA2, EDNRB2, TRPM1</i> and <i>RAB38</i>). 3. Functional annotation of the co-expressed DEGs and DELs was performed using Gene Ontology (GO) and Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway analyses. The co-expressed DEGs were mainly involved in melanogenesis and the co-expressed genes of 117 and 108 DELs were significantly enriched in the melanogenesis and tyrosine metabolism pathways, respectively. 4. The DEL-DEG interaction network revealed that three lncRNAs (XR_003072387.1, XR_003075112.1, and XR_003077033.1) and <i>DCT</i> genes may have key roles in regulating melanogenesis in chicken skin. This data provides the groundwork for studying the lncRNA regulatory mechanisms of skin melanogenesis and suggested a new perspective on the modulation of melanogenesis in chicken skin based on a lncRNA-mRNA causal regulatory network.
DOI: 10.6084/m9.figshare.21081242
title: CircSUCO promotes proliferation and differentiation of chicken skeletal muscle satellite cells <i>via</i> sponging miR-15

description: 1. In a previous high-throughput sequencing study, a novel circular RNA (circRNA) generated from a SUN domain containing ossification factor (<i>SUCO</i>) gene transcript (circSUCO) was differentially expressed during the embryonic muscle development. This study aimed to further explore the effect of circSUCO on chicken skeletal muscle development. 2. The experiment analysed the expression patterns of circSUCO in Tianfu broilers and clarified its function in the chicken skeletal muscle satellite cells (SMSC) after circSUCO knockdown. The qPCR results showed circSUCO was highly expressed in skeletal muscle and has different expression levels during various development periods. 3. Mechanistically, a series of <i>in vitro</i> experiments showed that circSUCO interference suppressed proliferation and differentiation of SMSC. In addition, it was observed that circSUCO competitively binds with microRNAs such as miR-15a, miR-15b-5p, and miR-15c-5p according to the dual-luciferase assay and qPCR. 4. Correlation was positive between the circSUCO expression level and the ratio of the breast muscle. The results revealed that circSUCO could play a positive role in proliferation and differentiation of SMSC <i>via</i> sponging miR-15a, miR-15b-5p, and miR-15c-5p, hence, may contribute to skeletal muscle development in chicken.