cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5946790
title: Pterygosomatidae_Pimeliaphilus_Arc183_dors_20x_Leica_TumGU_p1_DIC&incident

description: Original image stacks of the larval parasitic mite found in Early Cretaceous (Albian) Archingeay-Les Nouillers (= Font-de-Benon quarry) fossil resin locality.<br>Material - Inclusion in opaque, light-brown piece of fossil resin trimmed to an approximate parallelepiped 0.5x0.5x1.5 mm and polished on four sides. Housed in the amber collection of the Geological Institute and Museum of the University of Rennes, France, with collection number IGR.ARC.183. Photographed in temporary glycerol mounts.<br>Imaging: Compound microscopes Nikon E-800, Zeiss AxioImager A2 and Leica DM 2500 with water-immersion (Nikon, 40x and 60x), dry and oil-immersion (Leica, Zeiss) brightfield, polarized and differential interference contrast and incident illumination were used. Stacks of images, comprising multiple focal planes, were obtained with digital cameras Nikon D 7000 on Nikon microscope, Zeiss Axiocam 506 color on Zeiss microscope and Leica DFC 450 on Leica microscope. Stacks were corrected for colour, brightness and noise with Adobe Lightroom, then exported to .jpg.<br><br>Microscope, illumination type and magnification are recorded in the folder title. Scale bars are provided along with images. Note that scale bar image is to be scaled 2x when used with files containing x0.5 in the name.<br>
DOI: 10.6084/m9.figshare.5946790.v1
title: Pterygosomatidae_Pimeliaphilus_Arc183_dors_20x_Leica_TumGU_p1_DIC&incident

description: Original image stacks of the larval parasitic mite found in Early Cretaceous (Albian) Archingeay-Les Nouillers (= Font-de-Benon quarry) fossil resin locality.<br>Material - Inclusion in opaque, light-brown piece of fossil resin trimmed to an approximate parallelepiped 0.5x0.5x1.5 mm and polished on four sides. Housed in the amber collection of the Geological Institute and Museum of the University of Rennes, France, with collection number IGR.ARC.183. Photographed in temporary glycerol mounts.<br>Imaging: Compound microscopes Nikon E-800, Zeiss AxioImager A2 and Leica DM 2500 with water-immersion (Nikon, 40x and 60x), dry and oil-immersion (Leica, Zeiss) brightfield, polarized and differential interference contrast and incident illumination were used. Stacks of images, comprising multiple focal planes, were obtained with digital cameras Nikon D 7000 on Nikon microscope, Zeiss Axiocam 506 color on Zeiss microscope and Leica DFC 450 on Leica microscope. Stacks were corrected for colour, brightness and noise with Adobe Lightroom, then exported to .jpg.<br><br>Microscope, illumination type and magnification are recorded in the folder title. Scale bars are provided along with images. Note that scale bar image is to be scaled 2x when used with files containing x0.5 in the name.<br>
DOI: 10.6084/m9.figshare.5946784
title: Pterygosomatidae_Pimeliaphilus_ARC_183_lat_20x_Zeiss_TumGU_ver2

description: Original image stacks of the larval parasitic mite found in Early Cretaceous (Albian) Archingeay-Les Nouillers (= Font-de-Benon quarry) fossil resin locality.<br>Material - Inclusion in opaque, light-brown piece of fossil resin trimmed to an approximate parallelepiped 0.5x0.5x1.5 mm and polished on four sides. Housed in the amber collection of the Geological Institute and Museum of the University of Rennes, France, with collection number IGR.ARC.183. Photographed in temporary glycerol mounts.<br>Imaging: Compound microscopes Nikon E-800, Zeiss AxioImager A2 and Leica DM 2500 with water-immersion (Nikon, 40x and 60x), dry and oil-immersion (Leica, Zeiss) brightfield, polarized and differential interference contrast and incident illumination were used. Stacks of images, comprising multiple focal planes, were obtained with digital cameras Nikon D 7000 on Nikon microscope, Zeiss Axiocam 506 color on Zeiss microscope and Leica DFC 450 on Leica microscope. Stacks were corrected for colour, brightness and noise with Adobe Lightroom, then exported to .jpg.<br><br>Microscope, illumination type and magnification are recorded in the folder title. Scale bars are provided along with images. Note that scale bar image is to be scaled 2x when used with files containing x0.5 in the name.<br>
DOI: 10.6084/m9.figshare.5946784.v1
title: Pterygosomatidae_Pimeliaphilus_ARC_183_lat_20x_Zeiss_TumGU_ver2

description: Original image stacks of the larval parasitic mite found in Early Cretaceous (Albian) Archingeay-Les Nouillers (= Font-de-Benon quarry) fossil resin locality.<br>Material - Inclusion in opaque, light-brown piece of fossil resin trimmed to an approximate parallelepiped 0.5x0.5x1.5 mm and polished on four sides. Housed in the amber collection of the Geological Institute and Museum of the University of Rennes, France, with collection number IGR.ARC.183. Photographed in temporary glycerol mounts.<br>Imaging: Compound microscopes Nikon E-800, Zeiss AxioImager A2 and Leica DM 2500 with water-immersion (Nikon, 40x and 60x), dry and oil-immersion (Leica, Zeiss) brightfield, polarized and differential interference contrast and incident illumination were used. Stacks of images, comprising multiple focal planes, were obtained with digital cameras Nikon D 7000 on Nikon microscope, Zeiss Axiocam 506 color on Zeiss microscope and Leica DFC 450 on Leica microscope. Stacks were corrected for colour, brightness and noise with Adobe Lightroom, then exported to .jpg.<br><br>Microscope, illumination type and magnification are recorded in the folder title. Scale bars are provided along with images. Note that scale bar image is to be scaled 2x when used with files containing x0.5 in the name.<br>
DOI: 10.6084/m9.figshare.5946760
title: Pterygosomatidae_Pimeliaphilus_ARC_183_dors_20x_Zeiss_TumGU

description: Original image stacks of the larval parasitic mite found in Early Cretaceous (Albian) Archingeay-Les Nouillers (= Font-de-Benon quarry) fossil resin locality.<br>Material - Inclusion in opaque, light-brown piece of fossil resin trimmed to an approximate parallelepiped 0.5x0.5x1.5 mm and polished on four sides. Housed in the amber collection of the Geological Institute and Museum of the University of Rennes, France, with collection number IGR.ARC.183. Photographed in temporary glycerol mounts.<br>Imaging: Compound microscopes Nikon E-800, Zeiss AxioImager A2 and Leica DM 2500 with water-immersion (Nikon, 40x and 60x), dry and oil-immersion (Leica, Zeiss) brightfield, polarized and differential interference contrast and incident illumination were used. Stacks of images, comprising multiple focal planes, were obtained with digital cameras Nikon D 7000 on Nikon microscope, Zeiss Axiocam 506 color on Zeiss microscope and Leica DFC 450 on Leica microscope. Stacks were corrected for colour, brightness and noise with Adobe Lightroom, then exported to .jpg.<br><br>Microscope, illumination type and magnification are recorded in the folder title. Scale bars are provided along with images. Note that scale bar image is to be scaled 2x when used with files containing x0.5 in the name.<br>
DOI: 10.6084/m9.figshare.5946760.v1
title: Pterygosomatidae_Pimeliaphilus_ARC_183_dors_20x_Zeiss_TumGU

description: Original image stacks of the larval parasitic mite found in Early Cretaceous (Albian) Archingeay-Les Nouillers (= Font-de-Benon quarry) fossil resin locality.<br>Material - Inclusion in opaque, light-brown piece of fossil resin trimmed to an approximate parallelepiped 0.5x0.5x1.5 mm and polished on four sides. Housed in the amber collection of the Geological Institute and Museum of the University of Rennes, France, with collection number IGR.ARC.183. Photographed in temporary glycerol mounts.<br>Imaging: Compound microscopes Nikon E-800, Zeiss AxioImager A2 and Leica DM 2500 with water-immersion (Nikon, 40x and 60x), dry and oil-immersion (Leica, Zeiss) brightfield, polarized and differential interference contrast and incident illumination were used. Stacks of images, comprising multiple focal planes, were obtained with digital cameras Nikon D 7000 on Nikon microscope, Zeiss Axiocam 506 color on Zeiss microscope and Leica DFC 450 on Leica microscope. Stacks were corrected for colour, brightness and noise with Adobe Lightroom, then exported to .jpg.<br><br>Microscope, illumination type and magnification are recorded in the folder title. Scale bars are provided along with images. Note that scale bar image is to be scaled 2x when used with files containing x0.5 in the name.<br>
DOI: 10.6084/m9.figshare.5946757
title: Attenuated total reflection Fourier transform infrared (ATR-FTIR) to detect osteoarthritis in equine serum

description: Our cohort consisted of 15 horses with osteoarthritis (OA) and 48 without clinical signs of the disease, which were used as controls. Attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy was used to analyse serum samples (50 μL) collected from the donors. Spectral processing and multivariate analysis revealed differences and similarities, allowing for detection of biomarkers discriminating between the two cohorts. A supervised classification algorithm, namely principal component analysis coupled with quadratic discriminant analysis (PCA-QDA), was also applied to evaluate the diagnostic accuracy.<br>
DOI: 10.6084/m9.figshare.5946757.v1
title: Attenuated total reflection Fourier transform infrared (ATR-FTIR) to detect osteoarthritis in equine serum

description: Our cohort consisted of 15 horses with osteoarthritis (OA) and 48 without clinical signs of the disease, which were used as controls. Attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy was used to analyse serum samples (50 μL) collected from the donors. Spectral processing and multivariate analysis revealed differences and similarities, allowing for detection of biomarkers discriminating between the two cohorts. A supervised classification algorithm, namely principal component analysis coupled with quadratic discriminant analysis (PCA-QDA), was also applied to evaluate the diagnostic accuracy.<br>
DOI: 10.6084/m9.figshare.5946745
title: safetydata_Sangroongruangsri et al2018

description: Dataset for an article entitle "<b>Real world safety of intravitreal bevacizumab and ranibizumab treatments for retinal diseases in Thailand: a prospective observational study</b>"<br>Published in Clinical Drug Investigation
DOI: 10.6084/m9.figshare.5946745.v1
title: safetydata_Sangroongruangsri et al2018

description: Dataset for an article entitle "<b>Real world safety of intravitreal bevacizumab and ranibizumab treatments for retinal diseases in Thailand: a prospective observational study</b>"<br>Published in Clinical Drug Investigation
DOI: 10.6084/m9.figshare.5946739
title: Arrhythmic hazard under multiple ion channel block map by a 3D whole-ventricles model

description: Description of the ECG data<br>ECG4_INa***ICa***IKr***IKs***INaL***.out : Limb leads electrocardiogramColumn1:time[ms], Column2:I-lead[mV], Column3:II-lead[mV], Column4:III-lead[mV], Column5:aVR-lead[mV], Column6:aVL-lead[mV], Column7:aVF-lead[mV], Column8:VR-lead[mV], Column9:VL-lead[mV], Column10:VF-lead[mV]<br>ECGC_INa***ICa***IKr***IKs***INaL***.out : Precordial leads electrocardiogramColumn1:time[ms], Column2:V1-lead[mV], Column3:V2-lead[mV], Column4:V3-lead[mV], Column5:V4-lead[mV], Column6:V5-lead[mV], Column7:V6-lead[mV], Column8:Wilson central terminal[mV]
DOI: 10.6084/m9.figshare.5946739.v1
title: Arrhythmic hazard under multiple ion channel block map by a 3D whole-ventricles model

description: Description of the ECG data<br>ECG4_INa***ICa***IKr***IKs***INaL***.out : Limb leads electrocardiogramColumn1:time[ms], Column2:I-lead[mV], Column3:II-lead[mV], Column4:III-lead[mV], Column5:aVR-lead[mV], Column6:aVL-lead[mV], Column7:aVF-lead[mV], Column8:VR-lead[mV], Column9:VL-lead[mV], Column10:VF-lead[mV]<br>ECGC_INa***ICa***IKr***IKs***INaL***.out : Precordial leads electrocardiogramColumn1:time[ms], Column2:V1-lead[mV], Column3:V2-lead[mV], Column4:V3-lead[mV], Column5:V4-lead[mV], Column6:V5-lead[mV], Column7:V6-lead[mV], Column8:Wilson central terminal[mV]
DOI: 10.6084/m9.figshare.5946736
title: SVDquest failed datasets

description: This fileset includes sequences that failed when run under SVDquartets+PAUP* with the message "No informative quartets were found in SVDQuartets analysis."<br>This data is based on data originally generated for "ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes." (Mirarab and Warnow 2015).
DOI: 10.6084/m9.figshare.5946736.v1
title: SVDquest failed datasets

description: This fileset includes sequences that failed when run under SVDquartets+PAUP* with the message "No informative quartets were found in SVDQuartets analysis."<br>This data is based on data originally generated for "ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes." (Mirarab and Warnow 2015).
DOI: 10.6084/m9.figshare.5946607
title: PNPLA3xNASH Brazil.xlsm

description: Data of PNPLA3 x NASH study in Brazil
DOI: 10.17632/v4jw2d9rbm.1
title: Dataset of Israeli et al 2020-Impact of textural patterns on rock weathering rates and size distribution of weathered grains

description: These data files here were used to generate the figures and results in the manuscript by Israeli, Salhov, and Emmanuel entitled "Impact of textural patterns on rock weathering rates and size distribution of weathered grains”. This paper describes the use of a numerical model that simulates chemical weathering and grain detachment in rocks with different textural patterns. We use a cellular automaton model to simulate the weathering of rocks possessing grain boundaries, cracks, and stylolites. We ran simulations of both synthetic patterns as well as natural patterns of cracks, and stylolites. A 2-D cross-section of the rock was represented using a domain with 560*420 elements. Each element represented either a solid mineral, a discontinuity, or a fluid phase and is assigned a characteristic value. At each step, we calculated the number of elements removed by chemical weathering and by mechanical weathering. The dimensions and locations of each detached grain were recorded. The available reactive surface in every time step was also calculated, based on the location of the pixels that neighbor the reactive fluid. The data were then analyzed to assess the weathering rate and the grain size distribution of the detached fragments. When calculating the grain size distributions, we only considered detached clusters larger than 10 pixels, and the amplitude of each size bin represents the cumulative number of pixels of the individual grains within the bin. The data from every simulation included the rock’s initial properties and the dynamic properties of the rock in every step. These properties include the matrix of the rock in every step, a list of pixels that were dissolved, location, and dimensions of detached fragments in every step. The data was uploaded into a MySQL database facilitating analysis of the datasets. We found that for all patterns, weathering rates increase with the density of discontinuities. When the abundance of discontinuities was lower than ~25%, the synthetic patterns weathering rate followed the order: grid&gt; honeycomb&gt; Voronoi&gt; brick-wall. However, for higher values of discontinuity density, all patterns exhibit similar weathering rates. We also tested the impact of the tortuosity of the pattern on weathering rates, and found rates to decrease with increasing tortuosity. In addition, we show that the rock textural pattern strongly impacts the detached grain size distributions. Rocks with an initial monomodal grain size distribution produce weathered fragments that are normally distributed. In contrast, rocks with an initial log-normal size distribution produce weathered grains that are log-normally distributed. For the natural rock patterns, weathering changed the initial multimodal grain size distributions to lower modality distributions. We show how discontinuities, such as cracks, grain boundaries, and stylolites impact rock weathering rates and the size distribution of weathered grains.
DOI: 10.6084/m9.figshare.5946553.v1
title: Day-#-temporal

description: Day-#-temporal
DOI: 10.6084/m9.figshare.5946553.v2
title: Day-#-temporal

description: Day-#-temporal
DOI: 10.6084/m9.figshare.5946553.v3
title: Day-#-temporal

description: Day-#-temporal
DOI: 10.6084/m9.figshare.5946553.v4
title: Day-#-temporal

description: Day-#-temporal
DOI: 10.6084/m9.figshare.5946532
title: Images from a Drosophila melanogaster Wing loading experiment from populations experimentally evolved with mantid predators

description: Images from an unpublished experiment to examine whether wing loading (using thorax size as a proxy for overall size) had evolved as a result of experimental evolution of <i>Drosophila melanogaster </i>in the presence of juvenile Chinese mantids (<i>Tenodera aridifolia sinensis</i>). Experimental Evolution was conducted by Dr. Michael DeNieu while a graduate student, while this experiment and measuring was conducted by Dr. Alycia Kowalski while a technician in the lab. This work was done in the lab of Ian Dworkin while at Michigan State University.<br><br>All images were taken on a Leica M125 Microscope, with a Leica DFC400 Digital camera using the Leica Application Software V 3.4.0.<br><br>Naming conventions for file<br>Sel/Con - selection (with predator) or control (no predator) lineages used.<br><br>R1/R2 - replicate lineage used. For each treatment, there were two independently evolved lineages with and without the predators.<br><br>HD/LD - Flies were reared under high density or low density conditions. <br><br>M/F - Sex of individual<br><br>legs/wings/thorax - which part of the individual was imaged.<br><br>The second set of images were from the same experiment, just redone to check scale.<br><br>While this work was not used in any study, see<br>https://www.biorxiv.org/content/early/2014/05/19/005322 for more details on the experimental design for experimental evolution.<br><br> <br><br> <br>
DOI: 10.6084/m9.figshare.5946532.v2
title: Images from a Drosophila melanogaster Wing loading experiment from populations experimentally evolved with mantid predators

description: Images from an unpublished experiment to examine whether wing loading (using thorax size as a proxy for overall size) had evolved as a result of experimental evolution of <i>Drosophila melanogaster </i>in the presence of juvenile Chinese mantids (<i>Tenodera aridifolia sinensis</i>). Experimental Evolution was conducted by Dr. Michael DeNieu while a graduate student, while this experiment and measuring was conducted by Dr. Alycia Kowalski while a technician in the lab. This work was done in the lab of Ian Dworkin while at Michigan State University.<br><br>All images were taken on a Leica M125 Microscope, with a Leica DFC400 Digital camera using the Leica Application Software V 3.4.0.<br><br>Naming conventions for file<br>Sel/Con - selection (with predator) or control (no predator) lineages used.<br><br>R1/R2 - replicate lineage used. For each treatment, there were two independently evolved lineages with and without the predators.<br><br>HD/LD - Flies were reared under high density or low density conditions. <br><br>M/F - Sex of individual<br><br>legs/wings/thorax - which part of the individual was imaged.<br><br>The second set of images were from the same experiment, just redone to check scale.<br><br>While this work was not used in any study, see<br>https://www.biorxiv.org/content/early/2014/05/19/005322 for more details on the experimental design for experimental evolution.<br><br> <br><br> <br>
DOI: 10.6084/m9.figshare.5946532.v1
title: Images from a Drosophila melanogaster Wing loading experiment from populations experimentally evolved with mantid predators

description: Images from an unpublished experiment to examine whether wing loading (using thorax size as a proxy for overall size) had evolved as a result of experimental evolution of <i>Drosophila melanogaster </i>in the presence of juvenile Chinese mantids (<i>Tenodera aridifolia sinensis</i>). Experimental Evolution was conducted by Dr. Michael DeNieu while a graduate student, while this experiment and measuring was conducted by Dr. Alycia Kowalski while a technician in the lab. This work was done in the lab of Ian Dworkin while at Michigan State University.<br><br>All images were taken on a Leica M125 Microscope, with a Leica DFC400 Digital camera using the Leica Application Software V 3.4.0.<br><br>Naming conventions for file<br>Sel/Con - selection (with predator) or control (no predator) lineages used.<br><br>R1/R2 - replicate lineage used. For each treatment, there were two independently evolved lineages with and without the predators.<br><br>HD/LD - Flies were reared under high density or low density conditions. <br><br>M/F - Sex of individual<br><br>legs/wings/thorax - which part of the individual was imaged.<br><br>The second set of images were from the same experiment, just redone to check scale.<br><br>While this work was not used in any study, see<br>https://www.biorxiv.org/content/early/2014/05/19/005322 for more details on the experimental design for experimental evolution.<br><br> <br><br> <br>
DOI: 10.6084/m9.figshare.5946511.v1
title: Ambient Noise Monitoring

description: Using ambient noise cross-correlation functions to track the temporal changes of seismic velocity after big shocks.
DOI: 10.6084/m9.figshare.5946502
title: Development of Novel Bio-medical Imaging System for Monitoring/Screening of Cancers based on Quantitative Margin Detection between Healthy and Malignant Biological Cells/Tissues

description: The project will be focus on cellular imaging by DHM to identify various diseases and to monitor the living cells with addition of anti-disease drugs to cell cultural medium by characterization and studying the parameters of interest of the infected and non-infected cells like change in their physical thickness, index of refraction, quantifying the morphological changes etc. For example, cellular volume changes play an important role in many processes associated with the normal cell activity as well as various diseases. Imaging of mostly transparent microscopic biological specimens presents a special challenge. Existing techniques such as Zernike phase-contrast microscopy and differential interference contrast microscopy do not offer direct quantitative evaluation of the phase information. In digital holography, however, the phase information is directly available from the calculated optical field. DH-QPM has been used to monitor the morphological changes during trypsinization, hypo-osmotic, and apoptosis processes and research is still being carried out in order to expand this field. However, a very few investigations have been carried out to study the drug-induced dynamic changes of a single cell's cytoskeleton.