cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34943/76d44430-d566-4cb5-a1f5-2f2412ec5427
title: Fraser River Delta Upper Slope Hydrophone Deployed 2018-10-04

description: The Ocean Sonics icListen AF Hydrophone 2556 was deployed on 2018-10-04 at Fraser River Delta Upper Slope. This site is located on the upper slope of the Fraser River delta, where depth is approximately 100 metres. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.7278/s50d-xbns-3ge3
title: Dataset for: Performance evaluation of the Alphasense OPC-N3 and Plantower PMS5003 sensor in measuring dust events in the Salt Lake Valley, Utah
DOI: 10.18112/openneuro.ds004253.v1.0.1
title: HCP Unrelated 100 Subset (HCP-30)
DOI: 10.6084/m9.figshare.20089802.v1
title: Dataset1.xlsx

description: Dataset 1
DOI: 10.15454/dfiafe/9smtke
title: ElJanati_20220310_Composting-Chopped-Dry-Palms-Experiment_UMRSAS_first results.pdf

description: slides presented at UMRSAS, March 11, 2022, on the occasion of the weekly scientific animations
DOI: 10.15454/dfiafe/got0ej
title: ElJanati_2022_Composting-Chopped-Dry-Palms-expe-2019_Temperatures.tab

description: daily observations of temperatures and all details of data processing to produce figures presented in the slides
DOI: 10.15454/dfiafe/s1xwq2
title: ElJanati_2022_Composting-Chopped-Dry-Palms-expe-2019_Masses.xlsm

description: avec macros pour affecter les lettres aux traitements
DOI: 10.15454/dfiafe/vdrmrh
title: ElJanati_20220222_Composting-Chopped-Dry-Palms_concl_ fr.pdf

description: summary of the work
DOI: 10.15454/dfiafe/xhfujb
title: ElJanati_2022_Composting-Chopped-Dry-Palms-expe-2019_Masses.tab

description: all details of data processing from raw observations to figures presented in the pdf
DOI: 10.57745/mzqjib
title: ElJanati_2022_Composting-Chopped-Dry-Palms-expe-2019_Masses_v2.tab

description: all details of data processing from raw observations to figures presented in the pdf; same content as xlsm file, without macros
DOI: 10.57745/tf5ubk
title: ElJanati_2022_Composting-Chopped-Dry-Palms-expe-2019_Masses_v2.xlsm

description: same content as xlsx file, with macros to choose the letters according to Welch test results; additional treatments compared to previous version (Tables sheet); correction of some copy-paste mistakes...
DOI: 10.6084/m9.figshare.20315103
title: Spiking dataset from McBride et al. 2022

description: Spiking dataset from McBride et al. 2022: Influence of claustrum on cortex varies by area, layer, and cell type <br> Contains spiking data collected with Neuropixels probes from mouse cortical brain areas during optogenetic stimulation of claustrum. More details can be found in the preprint here: https://www.biorxiv.org/content/10.1101/2022.02.22.481532v2 <br> Final publication: (link coming soon) <br> Spiking data has been spike sorted with Kilosort. <br> Other data includes wheel movement, optogenetic and visual stimulus information, trial timing, and metadata about each experiment and animal. <br> To access data, unzip "McBride_et_al_2022_spiking_data.zip" into a folder. One file "metadata.csv" contains metadata, while each ".hdf5" file contains the data from a single probe recording from a single experiment. In most experiments, 2 or more probes recorded simultaneously. <br> For more detail in accessing the data and examples in python, see the jupyter notebook provided "McBride et al. 2022 dataset tutorial.ipynb" -- also provided in .html. <br> <br>
DOI: 10.5517/ccdc.csd.cc290yy7
title: CCDC 2116089: Experimental Crystal Structure Determination

description: Related Article: Somnath, Rajashaker Bantu, Jagadeesh Babu Nanubolu, G. Jithender Reddy, B.V. Subba Reddy|2022|Tetrahedron|125|133021|doi:10.1016/j.tet.2022.133021
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cy1cr
title: CCDC 2202654: Experimental Crystal Structure Determination

description: Related Article: Hai-Xia Wang, Zhi-Hao Li, Wan-Wan Li, Gui-Rong Qu, Qi-Liang Yang, Hai-Ming Guo|2022|Green Chemistry|24|8377|doi:10.1039/D2GC03218J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c6t0f
title: CCDC 2181284: Experimental Crystal Structure Determination

description: Related Article: Esengül Çiftçi, Tuğba Alp Arıcı, Mürsel Arıcı, Hakan Erer, Okan Zafer Yeşilel|2022|CrystEngComm|24|7440|doi:10.1039/D2CE00897A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bf7z0
title: CCDC 2157692: Experimental Crystal Structure Determination

description: Related Article: Mingming Ruan, Anqi Li, Yaping Wen, Lian Zhou, Jun Zhang, Xiaopeng Xuan|2022|CrystEngComm|24|7420|doi:10.1039/D2CE01092E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17909/6n6q-ke17
title: HST WFC3 images for "Gas-rich, field ultra-diffuse galaxies host few globular clusters"
DOI: 10.22003/xfel.eu-data-002999-00
title: Uncovering the ultrafast lattice dynamics of polaron formation in epitaxial bismuth vanadate films for artificial photosynthesis
DOI: 10.5281/zenodo.7261660
title: BLEND: A Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis (yeast-pb-pbsim2)

description: <strong>yeast-pb-pbsim2</strong> Simulated PacBio CLR (P6 C4 model) reads used in the BLEND paper submission. Generated using PBSIM2 (see the yeast-pb-pbsim2/pbsim200x/pbsim.sh file)
DOI: 10.5281/zenodo.5781396
title: BLEND: A Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis (yeast-pb-pbsim2)

description: <strong>yeast-pb-pbsim2</strong> Simulated PacBio CLR (P6 C4 model) reads used in the BLEND paper submission. Generated using PBSIM2 (see the yeast-pb-pbsim2/pbsim200x/pbsim.sh file)
DOI: 10.5281/zenodo.7261655
title: BLEND: A Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis (yeast-ont-pbsim2)

description: <strong>yeast-ont-pbsim2</strong> Simulated ONT reads (R9.5 model) used in the BLEND paper submission. Generated using PBSIM2 (see the yeast-ont-pbsim2/pbsim100x/pbsim.sh file)
DOI: 10.5281/zenodo.6326963
title: BLEND: A Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis (yeast-ont-pbsim2)

description: <strong>yeast-ont-pbsim2</strong> Simulated ONT reads (R9.5 model) used in the BLEND paper submission. Generated using PBSIM2 (see the yeast-ont-pbsim2/pbsim100x/pbsim.sh file)
DOI: 10.5281/zenodo.7261610
title: BLEND: A Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis (chm13-ont-pbsim2)

description: Simulated 30X CHM13 ONT reads. PBSIM2 with R95 model is used to generate the reads.
DOI: 10.5281/zenodo.7261609
title: BLEND: A Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis (chm13-ont-pbsim2)

description: Simulated 30X CHM13 ONT reads. PBSIM2 with R95 model is used to generate the reads.
DOI: 10.6084/m9.figshare.21399897.v3
title: ISEVxTECH FCS and PDF data

description: Lyophilised GFP exosome reference standard provided by ISEVxTech from Merck (Exosome standards, fluorescent recombinant, expressed in human cells | Sigma-Aldrich (sigmaaldrich.com)). <br> Unless otherwise mentioned all samples and standards had data acquired over one minute and where water is used as a diluent it is HPLC grade water. Lyophilized Merck rEV’s resuspended in 100µl of water then placed on ice (all subsequent sample handling performed on ice as per manufacturer instruction). 2.17E+10 particles per ml (P/ml) QC beads diluted 1 in 100 with water to a volume of 100µl. Used to align Nanoanalyzer and create the concentration standard used to assess the samples. Size bead cocktail (68nm, 91nm, 113nm and 155nm) of silica nanospheres diluted 1 in 100 to a volume of 100µl with water then analysed to create the size standard (figure 1). 100µl TE buffer was analysed in order to provide a blank for the samples. Samples were serially diluted 1 in 25, 1 in 50 and 1 in 100 dilutions with TE buffer then immediately analysed in triplicate. Data analysis performed using the nFCM professional software, files saved in FCS. format with associated PDF reports found on Figshare.
DOI: 10.5281/zenodo.7249653
title: Active nematics director and flow field data

description: We conduct our experiments on the microtubule-kinesin active nematic system pioneered in Sanchez et al. 2012. The long rod-like MTs are bundled together via depletion interactions and are driven out of equilibrium by the action of kinesin-streptavidin motor protein complexes, which are units that induce relative motion utilizing ATP<br> as the energy source. Depletion forces also aid in driving the MT bundles to form bundles to the oil-water<br> fluid interface, where they execute self-sustained bending and buckling instabilities. The system is extensile,<br> which means that active stresses cause the MT bundles to extend in length and contract in width. To investigate the dynamics of defects in 2D flat space, we prepare the active nematic in a flow-cell setup<br> where the entire pool of ingredients is confined in a 2D sealed cell roughly 10 cm2 in area and 100 μm in<br> thickness. The lower surface of the cell is subjected to hydrophobic treatment (using Aquapel) and the<br> upper surface to hydrophilic treatment (using polyacrylamide coating) to enhance wetting by the respective<br> fluid phases. A fluorinated oil (HFE-7500 with surfactant E2K0660) forms the oil-phase, and the active MT<br> suspension forms the water-phase. We obtained purified tubulin monomers and kinesin–streptavidin motor<br> protein complexes from the Dogic Group at Brandeis University. The polymerization of tubulin to<br> MTs is performed in our lab before mixing with other biomaterials as per the protocols described in previous<br> works. The final active mix has 20% MTs by volume aided with 144μM ATP. The entire flow<br> cell is sealed by epoxy resin and centrifuged at 1000 RPM to accelerate the depletion mechanism to the<br> interface. <br> We use confocal fluorescence microscopy for visualization. The MTs are labeled with AlexaFlour 647 dye<br> and illuminated at 633 nm; the excitation and emission peaks are at 651 nm and 667 nm, respectively. After<br> sample preparation and centrifugation, we wait for 15-20 minutes to allow for uniform depletion, and then<br> image at a constant framerate till the activity ceases. Typically, the MTs stay active for 6+ hours. Imaging<br> is done using 10× and 20× objectives to focus on regions with area on the order of mm2, away from the<br> edges of the flow cell. The imaging process results in a time series of 8-bit grayscale images, which are stored<br> as the raw data. For more information, see "Physically-informed data-driven modeling of active nematics" by Golden et al.
DOI: 10.5281/zenodo.7249652
title: Active nematics director and flow field data

description: We conduct our experiments on the microtubule-kinesin active nematic system pioneered in Sanchez et al. 2012. The long rod-like MTs are bundled together via depletion interactions and are driven out of equilibrium by the action of kinesin-streptavidin motor protein complexes, which are units that induce relative motion utilizing ATP<br> as the energy source. Depletion forces also aid in driving the MT bundles to form bundles to the oil-water<br> fluid interface, where they execute self-sustained bending and buckling instabilities. The system is extensile,<br> which means that active stresses cause the MT bundles to extend in length and contract in width. To investigate the dynamics of defects in 2D flat space, we prepare the active nematic in a flow-cell setup<br> where the entire pool of ingredients is confined in a 2D sealed cell roughly 10 cm2 in area and 100 μm in<br> thickness. The lower surface of the cell is subjected to hydrophobic treatment (using Aquapel) and the<br> upper surface to hydrophilic treatment (using polyacrylamide coating) to enhance wetting by the respective<br> fluid phases. A fluorinated oil (HFE-7500 with surfactant E2K0660) forms the oil-phase, and the active MT<br> suspension forms the water-phase. We obtained purified tubulin monomers and kinesin–streptavidin motor<br> protein complexes from the Dogic Group at Brandeis University. The polymerization of tubulin to<br> MTs is performed in our lab before mixing with other biomaterials as per the protocols described in previous<br> works. The final active mix has 20% MTs by volume aided with 144μM ATP. The entire flow<br> cell is sealed by epoxy resin and centrifuged at 1000 RPM to accelerate the depletion mechanism to the<br> interface. <br> We use confocal fluorescence microscopy for visualization. The MTs are labeled with AlexaFlour 647 dye<br> and illuminated at 633 nm; the excitation and emission peaks are at 651 nm and 667 nm, respectively. After<br> sample preparation and centrifugation, we wait for 15-20 minutes to allow for uniform depletion, and then<br> image at a constant framerate till the activity ceases. Typically, the MTs stay active for 6+ hours. Imaging<br> is done using 10× and 20× objectives to focus on regions with area on the order of mm2, away from the<br> edges of the flow cell. The imaging process results in a time series of 8-bit grayscale images, which are stored<br> as the raw data. For more information, see "Physically-informed data-driven modeling of active nematics" by Golden et al.
DOI: 10.6084/m9.figshare.21440997.v1
title: Untitled Item

description: Frog trait data set for 90 species in NSW, Australia.
DOI: 10.6084/m9.figshare.3761562.v2388
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.21440979.v1
title: Literature_data.xlsx

description: Systematic review data for the article: Frogs and flow: using traits and flow-dependent groups to develop flow requirements for stream frogs
DOI: 10.6084/m9.figshare.21440979.v2
title: NSW stream frog literature review data

description: Systematic review data for the article: Frogs and flow: using traits and flow-dependent groups to develop flow requirements for stream frogs
DOI: 10.6084/m9.figshare.21440994
title: Spectradyne ISEVxTech Submission.zip

description: Spectradyne's submission for ISEVxTech rEV Characterization Study
DOI: 10.6084/m9.figshare.21440994.v1
title: Spectradyne ISEVxTech Submission.zip

description: Spectradyne's submission for ISEVxTech rEV Characterization Study
DOI: 10.6084/m9.figshare.21440979
title: NSW stream frog literature review data

description: Systematic review data for the article: Frogs and flow: using traits and flow-dependent groups to develop flow requirements for stream frogs
DOI: 10.6084/m9.figshare.21440979.v4
title: NSW stream frog literature review data

description: Systematic review data for the article: Frogs and flow: using traits and flow-dependent groups to develop flow requirements for stream frogs
DOI: 10.6084/m9.figshare.21440979.v3
title: NSW stream frog literature review data

description: Systematic review data for the article: Frogs and flow: using traits and flow-dependent groups to develop flow requirements for stream frogs
DOI: 10.6084/m9.figshare.21440883.v1
title: WGS_LOS_5K_Chr20.vcf.gz

description: Louisiana Osteoporosis Study (LOS) is an ongoing research study and has recruited &gt;17,000 individuals since 2011. The aim of it is to investigate the genetic risk factors of osteoporosis and other complex diseases. We selected 4,986 unrelated subjects including 2,110 African Americans and 2,876 Caucasians randomly (stratified by sex and race groups) from the whole LOS cohort. WGS of the blood samples had an average sequencing depth of 22× and were aligned to the human reference genome (version GRCh38/hg38). The chromosome 20 of the LOS data has totally 3,098,112 Single-nucleotide variants (SNVs). After quality control including sample and single-nucleotide polymorphism (SNP) filtering (e.g., missing ratio&gt;0%, Hardy-Weinberg equilibrium (HWE) p-value
DOI: 10.5281/zenodo.7268870
title: DomainNet: Homograph Detection and Understanding in Data Lake Disambiguation

description: Datasets and their graph representations used for the: "DomainNet: Homograph Detection and Understanding in Data Lake Disambiguation" paper submission
DOI: 10.5281/zenodo.7268869
title: DomainNet: Homograph Detection and Understanding in Data Lake Disambiguation

description: Datasets and their graph representations used for the: "DomainNet: Homograph Detection and Understanding in Data Lake Disambiguation" paper submission
DOI: 10.6084/m9.figshare.21440997
title: NSW frogs and flows traits dataset

description: Frog trait data set for 90 species in NSW, Australia.
DOI: 10.6084/m9.figshare.21440997.v2
title: NSW frogs and flows traits dataset

description: Frog trait data set for 90 species in NSW, Australia.
DOI: 10.6084/m9.figshare.21440883.v2
title: WGS_LOS_5K_Chr20_DUOS.vcf.gz

description: Louisiana Osteoporosis Study (LOS) is an ongoing research study and has recruited &gt;17,000 individuals since 2011. The aim of it is to investigate the genetic risk factors of osteoporosis and other complex diseases. We selected 4,986 unrelated subjects including 2,110 African Americans and 2,876 Caucasians randomly (stratified by sex and race groups) from the whole LOS cohort. WGS of the blood samples had an average sequencing depth of 22× and were aligned to the human reference genome (version GRCh38/hg38). The chromosome 20 of the LOS data has totally 3,098,112 Single-nucleotide variants (SNVs). After quality control including sample and single-nucleotide polymorphism (SNP) filtering (e.g., missing ratio&gt;0%, Hardy-Weinberg equilibrium (HWE) p-value
DOI: 10.6084/m9.figshare.21440883.v3
title: WGS_LOS_5K_Chr20.vcf.gz

description: Louisiana Osteoporosis Study (LOS) is an ongoing research study and has recruited &gt;17,000 individuals since 2011. The aim of it is to investigate the genetic risk factors of osteoporosis and other complex diseases. We selected 4,986 unrelated subjects including 2,110 African Americans and 2,876 Caucasians randomly (stratified by sex and race groups) from the whole LOS cohort. WGS of the blood samples had an average sequencing depth of 22× and were aligned to the human reference genome (version GRCh38/hg38). The chromosome 20 of the LOS data has totally 3,098,112 Single-nucleotide variants (SNVs). After quality control including sample and single-nucleotide polymorphism (SNP) filtering (e.g., missing ratio&gt;0%, Hardy-Weinberg equilibrium (HWE) p-value
DOI: 10.22002/2bmc4-xp921
title: Supplemental Data for "Control of spatio-temporal patterning via cell growth in a multicellular synthetic gene circuit"
DOI: 10.6084/m9.figshare.21441036
title: Izon TRPS Data_ISEVxTech2022.zip

description: Summary of data for ISEVxTech conference.
DOI: 10.6084/m9.figshare.21441036.v1
title: Izon TRPS Data_ISEVxTech2022.zip

description: Summary of data for ISEVxTech conference.
DOI: 10.6084/m9.figshare.21440883.v4
title: WGS_LOS_5K_Chr20_DUOS.vcf.gz

description: Louisiana Osteoporosis Study (LOS) is an ongoing research study and has recruited &gt;17,000 individuals since 2011. The aim of it is to investigate the genetic risk factors of osteoporosis and other complex diseases. We selected 4,986 unrelated subjects including 2,110 African Americans and 2,876 Caucasians randomly (stratified by sex and race groups) from the whole LOS cohort. WGS of the blood samples had an average sequencing depth of 22× and were aligned to the human reference genome (version GRCh38/hg38). The chromosome 20 of the LOS data has totally 3,098,112 Single-nucleotide variants (SNVs). After quality control including sample and single-nucleotide polymorphism (SNP) filtering (e.g., missing ratio&gt;0%, Hardy-Weinberg equilibrium (HWE) p-value
DOI: 10.26093/cds/vizier.18690066
title: Search for extraterrestrial intelligence with ATA

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The application of autocorrelation SETI search techniques in an ATA survey.' (bibcode: 2018ApJ...869...66H)
DOI: 10.26093/cds/vizier.18690072
title: IN-SYNC. VIII. YSOs in NGC 1333, IC 348 and Orion A

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'IN-SYNC. VIII. Primordial disk frequencies in NGC 1333, IC 348, and the Orion A molecular cloud.' (bibcode: 2018ApJ...869...72Y)
DOI: 10.26093/cds/vizier.18690082
title: Carnegie-Chicago Hubble Program: RR Lyrae NIR obs.

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The Carnegie-Chicago Hubble Program: calibration of the near-infrared RR Lyrae period-luminosity relation with HST.' (bibcode: 2018ApJ...869...82R)
DOI: 10.26093/cds/vizier.18690009
title: Machine-learning investigation of the open cluster M67

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'A machine-learning-based investigation of the open cluster M67.' (bibcode: 2018ApJ...869....9G)
DOI: 10.26093/cds/vizier.18699041
title: DSHARP I. Sample, ALMA obs. log and overview

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The Disk Substructures at High Angular Resolution Project (DSHARP). I. Motivation, sample, calibration, and overview.' (bibcode: 2018ApJ...869L..41A)
DOI: 10.26093/cds/vizier.18699042
title: DSHARP. II. Annular substructures data

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The Disk Substructures at High Angular Resolution Project (DSHARP). II. Characteristics of annular substructures' (bibcode: 2018ApJ...869L..42H)
DOI: 10.26093/cds/vizier.10870361
title: Variable stars in M92

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'A study of the globular cluster Messier 92.' (bibcode: 1938ApJ....87..361N)