cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/ahhq-0827
title: Heron Island Coral Reef Dataset

description: This dataset is a large-scale dataset for underwater image restoration. This dataset is for the project underwater image restoration, which is a subproject of AIM FSP TB07.
DOI: 10.6084/m9.figshare.14708233.v1
title: Data underlying the study from Differential effects of COVID-19 lockdowns on well-being: interaction between age, gender and chronotype

description: A Comma-Separated Values (CSV) file containing an aggregated version of the data that allows reproduction of all the results described in the study.
DOI: 10.6084/m9.figshare.14708209.v1
title: Additional file 2 of Low-frequency earthquakes along the Ryukyu Islands triggered by teleseismic earthquakes

description: Additional file 2: Table S2. List of the triggered LFEs.
DOI: 10.6084/m9.figshare.14708206.v1
title: Additional file 1 of Low-frequency earthquakes along the Ryukyu Islands triggered by teleseismic earthquakes

description: Additional file 1: Table S1. List of earthquakes used in this study and data on the earthquakes’ peak ground velocity of the surface wave and amplitudes of LFEs.
DOI: 10.6084/m9.figshare.14708198.v1
title: Additional file 1 of Drug-related problems and its determinant among hospitalized neonates with sepsis at Jimma University Medical Center, Ethiopia: a prospective observational study

description: Additional file 1.
DOI: 10.6084/m9.figshare.14708283
title: gdsc_all_abs_ic50_bayesian_sigmoid_only9dosages.csv

description: IC50 information
DOI: 10.6084/m9.figshare.14708117.v1
title: Additional file 1 of Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans

description: Additional file 1: Table S1. Spreadsheet of genetic polysaccharide utilization loci (PUL) context of BD-FAE and its 200 closest homologs obtained by BLASTp search against internal PULDB. Locus tags were completed with BLASTp bits score, e-values, sequence similarities and CAZyme specificities in the genomic context, based on the predicted PUL and human curation.
DOI: 10.6084/m9.figshare.14708283.v2
title: gdsc_all_abs_ic50_bayesian_sigmoid_only9dosages.csv

description: IC50 information
DOI: 10.6084/m9.figshare.14708283.v1
title: gdsc_all_abs_ic50_bayesian_sigmoid_only9dosages.csv

description: IC50 information
DOI: 10.6084/m9.figshare.14708096.v1
title: Additional file 2 of The evolution of hard tick-borne relapsing fever borreliae is correlated with vector species rather than geographical distance

description: Additional file 2: Table S1. Reference strains of B. miyamotoi used in this study. Table S2. ANI values of chromosomes among HTRF borreliae. Table S3. SNPs identified in this study. Table S4. Summary information of NGS data. Table S5. Summary information of NGS data. Table S6. List of the tick mt-rrs sequences used in this study.
DOI: 10.6084/m9.figshare.14708253
title: S01_scRNA_seq_tpm.csv

description: scRNA-seq data
DOI: 10.6084/m9.figshare.14708253.v1
title: S01_scRNA_seq_tpm.csv

description: scRNA-seq data
DOI: 10.6084/m9.figshare.14708081.v1
title: Additional file 4 of Tumor fraction-guided cell-free DNA profiling in metastatic solid tumor patients

description: Additional file 4: Table S3. Summary of the mutations identified in cfDNA with z-scores &lt;5 using MSK-ACCESS.
DOI: 10.6084/m9.figshare.14708078.v1
title: Additional file 3 of Tumor fraction-guided cell-free DNA profiling in metastatic solid tumor patients

description: Additional file 3: Table S2. Summary of the mutations found in the tumor and plasma of the 118 patients.
DOI: 10.6084/m9.figshare.14708074.v1
title: Additional file 2 of Racial and ethnic disparities in opioid use for adolescents at US emergency departments

description: Additional file 2.
DOI: 10.6084/m9.figshare.14708071.v1
title: Additional file 1 of Racial and ethnic disparities in opioid use for adolescents at US emergency departments

description: Additional file 1.
DOI: 10.6084/m9.figshare.14708069.v1
title: Additional file 1 of Tumor fraction-guided cell-free DNA profiling in metastatic solid tumor patients

description: Additional file 1: Table S1. Summary of the tumor types, input cfDNA for cf-IMPACT, and the time between collection of matched tumor and plasma of the 118 patients.
DOI: 10.6084/m9.figshare.14708062.v1
title: Additional file 1 of Anti-fibrotic potential of erythropoietin signaling on bone marrow derived fibrotic cell

description: Additional file 1:
DOI: 10.6084/m9.figshare.14708256.v1
title: S05_scRNA_seq_response_prediction.xlsx

description: Predicted drug response based on scRNA-seq data
DOI: 10.6084/m9.figshare.14708256
title: S05_scRNA_seq_response_prediction.xlsx

description: Predicted drug response based on scRNA-seq data
DOI: 10.6084/m9.figshare.14707963.v1
title: Additional file 2 of Characterizing the oligogenic architecture of plant growth phenotypes informs genomic selection approaches in a common wheat population

description: Additional file 2 Excel file containing four tables representing QTL model output and additive QTL model output for plant height and heading date in all environments.
DOI: 10.6084/m9.figshare.14707925.v1
title: Additional file 9 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 9: Supplementary Table 9. Statistics for meadow vole WGCNA modules with significant correlations.
DOI: 10.6084/m9.figshare.14707922.v1
title: Additional file 8 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 8: Supplementary Table 8. Statistics for prairie vole WGCNA modules with significant correlations.
DOI: 10.6084/m9.figshare.14707919.v1
title: Additional file 7 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 7: Supplementary Table 7. WGCNA module assignments for all genes in meadow voles, along with module membership scores (MM) and module membership p-values (p.MM) for each module.
DOI: 10.6084/m9.figshare.14707916.v1
title: Additional file 6 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 6: Supplementary Table 6. WGCNA module assignments for all genes in prairie voles, along with module membership scores (MM) and module membership p-values (p.MM) for each module.
DOI: 10.6084/m9.figshare.14707913.v1
title: Additional file 5 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 5: Supplementary Table 5. Results of DESeq2 comparison of species x time interaction in ventral pallidum/nucleus accumbens. Positive log2FoldChange values indicate higher overall expression in prairie voles and negative log2FoldChange values indicate higher overall expression in meadow voles.
DOI: 10.6084/m9.figshare.14707910.v1
title: Additional file 4 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 4: Supplementary Table 4. Results of DESeq2 comparison of species x time interaction in hypothalamus. Positive log2FoldChange values indicate higher overall expression in prairie voles and negative log2FoldChange values indicate higher overall expression in meadow voles.
DOI: 10.6084/m9.figshare.14707907.v1
title: Additional file 3 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 3: Supplementary Table 3. Results of DESeq2 comparison of species x time interaction in amygdala. Positive log2FoldChange values indicate higher overall expression in prairie voles and negative log2FoldChange values indicate higher overall expression in meadow voles.
DOI: 10.6084/m9.figshare.14707904.v1
title: Additional file 2 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 2: Supplementary Table 2. Results of DESeq2 comparison of gene expression across brain regions.
DOI: 10.6084/m9.figshare.14707898.v1
title: Additional file 1 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding

description: Additional file 1: Supplementary Table 1. Results of DESeq2 comparison of virgin samples across species. Positive log2FoldChange values indicate higher expression in prairie voles and negative log2FoldChange values indicate higher expression in meadow voles.
DOI: 10.6084/m9.figshare.14707858.v1
title: Additional file 2 of Comparative analysis of de novo genomes reveals dynamic intra-species divergence of NLRs in pepper

description: Additional file 2: Table S1. Reference disease resistance genes used in this study. Table S2. Statistics of raw data used in this study. Table S3. K-mer frequency of ECW and SF. Table S4. Validation of genome assembly and gene annotation using BUSCO. Table S5. Comparison of predicted genes using published annotation database. Table S6. Summary of repeat annotation. Table S7. Number of orthologs per species. Table S8. Number of specific genes containing functional domains of ECW and SF in C. annuum.Table S9. Assigned NLR group and NB-ARC type. Table S10. Statistics of classified NLRs in C. annuum.Table S11. Ortholog pair of NLRs between five accessions in C. annuum.Table S12. Statistics of enriched group of NLRs per 1 Mb window. Table S13. List of significant CNV regions for NLRs.
DOI: 10.6084/m9.figshare.14707849.v1
title: Additional file 2 of Predicting breast cancer drug response using a multiple-layer cell line drug response network model

description: Additional file 2: Table S2. Associations between the expression level of PI3K pathway genes and PI3K inhibitor responses predicted by ML-CDN2. This table lists the PI3K pathway genes which show significant association between their expression levels with the predicted IC50 values of the PI3K pathway inhibitors.
DOI: 10.6084/m9.figshare.14707846.v1
title: Additional file 1 of Predicting breast cancer drug response using a multiple-layer cell line drug response network model

description: Additional file 1: Table S1. Correlations of cell line pairs with respect to their CNV, mutation and pathway activity profiles, as well as their response to all tested drugs in the GDSC.
DOI: 10.6084/m9.figshare.14707793.v1
title: Additional file 4 of Exonic variants undergoing allele-specific selection in cancers

description: Additional file 4. Data S1. List of exonic alleles that undergo somatic selection (P &lt; 0.05) with estimated selection pressure (Pi) and affected gene in four TCGA cancer types, BRCA, LUAD, COAD and PRAD.
DOI: 10.5281/zenodo.4885867
title: Appendix 2 Raw data for CD013156

description: Raw data for the Cochrane review "Lifestyle modifications for non-alcohol related fatty liver disease: a network meta-analysis" (CD013156)
DOI: 10.6084/m9.figshare.14707787.v1
title: Additional file 2 of Exonic variants undergoing allele-specific selection in cancers

description: Additional file 2. Table S2. TCGA sample identifiers from four cancer types included in the study.
DOI: 10.5281/zenodo.4506677
title: Appendix 2 Raw data for CD013156

description: Raw data for the Cochrane review "Lifestyle modifications for non-alcohol related fatty liver disease: a network meta-analysis" (CD013156)
DOI: 10.6084/m9.figshare.14707781.v1
title: Additional file 10 of Exonic variants undergoing allele-specific selection in cancers

description: Additional file 10. Table S7. The KEGG pathways that are significantly enriched in the genes affected by the alleles under somatic selection in four cancer types.
DOI: 10.6084/m9.figshare.14707775.v1
title: Additional file 1 of Role of multidetector computed tomography in evaluation of resectability of pancreatic cancer

description: Additional file 1.
DOI: 10.6084/m9.figshare.14707769.v1
title: Additional file 9 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 9: Table S8. p-values of differentially expressed genes between G. morsitans bacteriomes and midgut libraries.
DOI: 10.6084/m9.figshare.14707766.v1
title: Additional file 8 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 8: Table S7. p-values of differentially expressed genes between G. brevipalpis bacteriomes and midgut libraries.
DOI: 10.6084/m9.figshare.14707763.v1
title: Additional file 7 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 7: Table S6. p-values of differentially expressed genes between G. brevipalpis and G. morsitans in midgut libraries.
DOI: 10.6084/m9.figshare.14707757.v1
title: Additional file 6 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 6: Table S5. p-values of differentially expressed genes between G. brevipalpis and G. morsitans in bacteriome libraries.
DOI: 10.6084/m9.figshare.14707754.v1
title: Additional file 5 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 5: Table S4. p-values of differentially expressed genes between Sodalis isolates.
DOI: 10.6084/m9.figshare.14707748.v1
title: Additional file 4 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 4: Table S3. Highly expressed Sodalis genes.
DOI: 10.6084/m9.figshare.14707745.v1
title: Additional file 3 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 3: Table S2. Upregulation and downregulation of differentially expressed genes between Wigglesworthia isolates.
DOI: 10.6084/m9.figshare.14707742.v1
title: Additional file 2 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 2: Table S1. Differentially expressed Wigglesworthia genes between female and male G. morsitans isolates.
DOI: 10.6084/m9.figshare.14707736.v1
title: Additional file 10 of The holobiont transcriptome of teneral tsetse fly species of varying vector competence

description: Additional file 10: Table S9. Primers used for the validation of Wigglesworthia differential expression though qRT-PCR.
DOI: 10.6084/m9.figshare.14707735.v1
title: Additional file 1 of Accelerated failure-time model with weighted least-squares estimation: application on survival of HIV positives

description: Additional file 1.
DOI: 10.6084/m9.figshare.14707715.v1
title: Additional file 2 of Clinical and genetic findings in patients with congenital cataract and heart diseases

description: Additional file 2: Table 1. Genomic findings in patients with cataract and heart diseases in DECIPHER database
DOI: 10.6084/m9.figshare.14708233
title: Data underlying the study from Differential effects of COVID-19 lockdowns on well-being: interaction between age, gender and chronotype

description: A Comma-Separated Values (CSV) file containing an aggregated version of the data that allows reproduction of all the results described in the study.
DOI: 10.6084/m9.figshare.14708209
title: Additional file 2 of Low-frequency earthquakes along the Ryukyu Islands triggered by teleseismic earthquakes

description: Additional file 2: Table S2. List of the triggered LFEs.
DOI: 10.6084/m9.figshare.14708206
title: Additional file 1 of Low-frequency earthquakes along the Ryukyu Islands triggered by teleseismic earthquakes

description: Additional file 1: Table S1. List of earthquakes used in this study and data on the earthquakes’ peak ground velocity of the surface wave and amplitudes of LFEs.
DOI: 10.6084/m9.figshare.14708198
title: Additional file 1 of Drug-related problems and its determinant among hospitalized neonates with sepsis at Jimma University Medical Center, Ethiopia: a prospective observational study

description: Additional file 1.
DOI: 10.5281/zenodo.4733377
title: Unified Approach for the Total Synthesis of bis-THF C15 Acetogenins: a Chloroenyne from Laurencia Majuscula, Laurendecumenyne B and Laurefurenynes A/B

description: A highly diastereoselective total synthesis of several <em>bis</em>-THF C<sub>15</sub> acetogenin class of natural products: chloroenyne from <em>Laurencia</em> <em>Majuscula</em>, laurendecumenyne B, laurefurenynes A/B and synthesis of an advanced intermediate reported in the earlier total synthesis of (<em>E</em>/<em>Z</em>)-elatenynes (formal Synthesis) are described. The salient features in the synthesis include epoxide opening, Birch reduction, Sharpless asymmetric dihydroxylation-cycloetherification, S<sub>N</sub>2 halogenation and a (relay-) cross-metathesis.
description: See the article at: https://doi.org/10.1055/a-1500-1407
DOI: 10.5281/zenodo.4733376
title: Unified Approach for the Total Synthesis of bis-THF C15 Acetogenins: a Chloroenyne from Laurencia Majuscula, Laurendecumenyne B and Laurefurenynes A/B

description: A highly diastereoselective total synthesis of several <em>bis</em>-THF C<sub>15</sub> acetogenin class of natural products: chloroenyne from <em>Laurencia</em> <em>Majuscula</em>, laurendecumenyne B, laurefurenynes A/B and synthesis of an advanced intermediate reported in the earlier total synthesis of (<em>E</em>/<em>Z</em>)-elatenynes (formal Synthesis) are described. The salient features in the synthesis include epoxide opening, Birch reduction, Sharpless asymmetric dihydroxylation-cycloetherification, S<sub>N</sub>2 halogenation and a (relay-) cross-metathesis.
description: See the article at: https://doi.org/10.1055/a-1500-1407
DOI: 10.6084/m9.figshare.14708117
title: Additional file 1 of Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans

description: Additional file 1: Table S1. Spreadsheet of genetic polysaccharide utilization loci (PUL) context of BD-FAE and its 200 closest homologs obtained by BLASTp search against internal PULDB. Locus tags were completed with BLASTp bits score, e-values, sequence similarities and CAZyme specificities in the genomic context, based on the predicted PUL and human curation.
DOI: 10.5281/zenodo.4885947
title: Evaluation of Bagasse Ash as Cement and Sand Replacement for the Production of Engineered Cementitious Composites (ECC)

description: The objective of this study was to develop novel Engineered Cementitious Composites (ECC) materials implementing sugarcane bagasse ash (SCBA). To this end, the effects on the mechanical and physical properties of ECC materials of: (1) Louisiana raw SCBA (RBA) as a partial and complete replacement of sand (i.e., class S mixtures); (2) Louisiana post-processed SCBA (PBA) as a partial replacement of cement (i.e., class C mixtures); and (3) Ecuador raw SCBA (EBA) as a partial and complete replacement of sand (i.e., class S-E mixtures) were studied. Sand replacement levels with RBA and EBA evaluated were 25, 50, 75, and 100% (by volume), while cement replacement levels with PBA studied were 40, 50, and 60% (by mass). RBA and EBA were subjected to minor processing by drying and sieving to remove moisture and coarse impurities. On the other hand, PBA was produced by further processing of RBA through burning and grinding. RBA and EBA were mainly composed of silica; yet, presented high carbon content and large particle size relative to cement. Conversely, PBA exhibited low carbon content and small particle size. Tests conducted for class S and class C mixtures included compressive strength, uniaxial tensile, surface resistivity, shrinkage, coefficient of thermal expansion, and slant shear tests. In the case of S-E mixtures, tests conducted included compressive strength and flexural strength tests. The use of RBA as sand replacement caused minor reductions in the compressive strength of ECC (up to 11%), yet it produced a dramatic improvement in the tensile ductility (up to 311%). Moreover, the tensile strength of all RBA admixed ECC also improved (up to 22.3%). Implementation of RBA also produced a decrease in surface resistivity and an increase in shrinkage. For class S-E mixtures, the implementation of EBA as sand replacement produced an increase in compressive strength and flexural strength. For class C mixtures, the implementation of PBA as cement replacement produced significant reductions in compressive strength (up to 39.1%) and tensile strength (up to 28.1%). Nevertheless, it increased the tensile ductility of the composites (up to 85%). Furthermore, the surface resistivity and shrinkage of PBA admixed ECC increased with the increment in cement replacement with PBA.
description: Tran-SET Project: 19CLSU03
DOI: 10.5281/zenodo.4885946
title: Evaluation of Bagasse Ash as Cement and Sand Replacement for the Production of Engineered Cementitious Composites (ECC)

description: The objective of this study was to develop novel Engineered Cementitious Composites (ECC) materials implementing sugarcane bagasse ash (SCBA). To this end, the effects on the mechanical and physical properties of ECC materials of: (1) Louisiana raw SCBA (RBA) as a partial and complete replacement of sand (i.e., class S mixtures); (2) Louisiana post-processed SCBA (PBA) as a partial replacement of cement (i.e., class C mixtures); and (3) Ecuador raw SCBA (EBA) as a partial and complete replacement of sand (i.e., class S-E mixtures) were studied. Sand replacement levels with RBA and EBA evaluated were 25, 50, 75, and 100% (by volume), while cement replacement levels with PBA studied were 40, 50, and 60% (by mass). RBA and EBA were subjected to minor processing by drying and sieving to remove moisture and coarse impurities. On the other hand, PBA was produced by further processing of RBA through burning and grinding. RBA and EBA were mainly composed of silica; yet, presented high carbon content and large particle size relative to cement. Conversely, PBA exhibited low carbon content and small particle size. Tests conducted for class S and class C mixtures included compressive strength, uniaxial tensile, surface resistivity, shrinkage, coefficient of thermal expansion, and slant shear tests. In the case of S-E mixtures, tests conducted included compressive strength and flexural strength tests. The use of RBA as sand replacement caused minor reductions in the compressive strength of ECC (up to 11%), yet it produced a dramatic improvement in the tensile ductility (up to 311%). Moreover, the tensile strength of all RBA admixed ECC also improved (up to 22.3%). Implementation of RBA also produced a decrease in surface resistivity and an increase in shrinkage. For class S-E mixtures, the implementation of EBA as sand replacement produced an increase in compressive strength and flexural strength. For class C mixtures, the implementation of PBA as cement replacement produced significant reductions in compressive strength (up to 39.1%) and tensile strength (up to 28.1%). Nevertheless, it increased the tensile ductility of the composites (up to 85%). Furthermore, the surface resistivity and shrinkage of PBA admixed ECC increased with the increment in cement replacement with PBA.
description: Tran-SET Project: 19CLSU03
DOI: 10.6084/m9.figshare.14708096
title: Additional file 2 of The evolution of hard tick-borne relapsing fever borreliae is correlated with vector species rather than geographical distance

description: Additional file 2: Table S1. Reference strains of B. miyamotoi used in this study. Table S2. ANI values of chromosomes among HTRF borreliae. Table S3. SNPs identified in this study. Table S4. Summary information of NGS data. Table S5. Summary information of NGS data. Table S6. List of the tick mt-rrs sequences used in this study.
DOI: 10.6084/m9.figshare.14708081
title: Additional file 4 of Tumor fraction-guided cell-free DNA profiling in metastatic solid tumor patients

description: Additional file 4: Table S3. Summary of the mutations identified in cfDNA with z-scores &lt;5 using MSK-ACCESS.