cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6848180
title: Little Moose Lake fish THg and stable C and N isotope dataset

description: Includes raw and length adjusted mercury concentrations, stable carbon and nitrogen isotope ratios, length, weight and age of Smallmouth Bass and Lake Trout and select lower trophic level organisms from Little Moose Lake (New York, USA)
DOI: 10.6084/m9.figshare.6848183.v1
title: Little Moose Lake Water Chemistry data

description: Contains long-term data for select water chemistry parameters from Little Moose Lake (New York, USA)
DOI: 10.6084/m9.figshare.6848180.v2
title: Little Moose Lake fish THg and stable C and N isotope dataset

description: Includes raw and length adjusted mercury concentrations, stable carbon and nitrogen isotope ratios, length, weight and age of Smallmouth Bass and Lake Trout and select lower trophic level organisms from Little Moose Lake (New York, USA)
DOI: 10.6084/m9.figshare.6848180.v1
title: Little Moose Lake Hg and SI dataset

description: Includes raw and length adjusted mercury concentrations, stable carbon and nitrogen isotope ratios, length, weight and age of Smallmouth Bass and Lake Trout and select lower trophic level organisms from Little Moose Lake (New York, USA)
DOI: 10.6084/m9.figshare.6848060
title: Additional file 3: of Genomic alterations accompanying tumour evolution in colorectal cancer: tracking the differences between primary tumours and synchronous liver metastases by whole-exome sequencing

description: Table S3. Private copy number abberations are colored blue. Differences in copy number abberations are illustrated with / showing status in primary/metastasis. Abbreviations: LOH (loss of heterogeneity), D (deletion), A (amplification). (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6848060.v1
title: Additional file 3: of Genomic alterations accompanying tumour evolution in colorectal cancer: tracking the differences between primary tumours and synchronous liver metastases by whole-exome sequencing

description: Table S3. Private copy number abberations are colored blue. Differences in copy number abberations are illustrated with / showing status in primary/metastasis. Abbreviations: LOH (loss of heterogeneity), D (deletion), A (amplification). (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6848048
title: Additional file 2: of Rare variants in SOX17 are associated with pulmonary arterial hypertension with congenital heart disease

description: Table S4. Variants in known CHD risk genes. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.6848048.v1
title: Additional file 2: of Rare variants in SOX17 are associated with pulmonary arterial hypertension with congenital heart disease

description: Table S4. Variants in known CHD risk genes. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.6848033
title: Additional file 1: of Genomic alterations accompanying tumour evolution in colorectal cancer: tracking the differences between primary tumours and synchronous liver metastases by whole-exome sequencing

description: Table S1. Private mutations. Abbreviations: SIFT (sort intolerant from tolerant), PP (mutation private to the primary tumour), PM (mutation private to the metastasis). (XLSX 50 kb)
DOI: 10.6084/m9.figshare.6848033.v1
title: Additional file 1: of Genomic alterations accompanying tumour evolution in colorectal cancer: tracking the differences between primary tumours and synchronous liver metastases by whole-exome sequencing

description: Table S1. Private mutations. Abbreviations: SIFT (sort intolerant from tolerant), PP (mutation private to the primary tumour), PM (mutation private to the metastasis). (XLSX 50 kb)
DOI: 10.6084/m9.figshare.6847991
title: MOESM6 of Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors

description: Additional file 6: TableÂ 5. Primers used in this study.
DOI: 10.6084/m9.figshare.6847991.v1
title: MOESM6 of Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors

description: Additional file 6: TableÂ 5. Primers used in this study.
DOI: 10.6084/m9.figshare.6847943
title: Additional file 1: of Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops

description: Table S1. RNAseq Libraries. Summary statistics of Brachypodium RNAseq libraries. Table S2. BDI Prominence Lvls. miRNA target prediction scores and prominence data for predicted Brachypodium miRNA targets. Table S3. SWI miRNAs. Genomic location, folding data, and sequences of conserved miRNAs found in switchgrass. Table S4. SWI Prominence Lvls. miRNA target prediction scores and prominence data for predicted switchgrass miRNA targets. Table S5. SBI Prominence Lvls. miRNA target prediction scores and prominence data for predicted sorghum miRNA targets. Table S6. Inverse and Unchanged. miRNA target prediction scores, annotation information, PARE data, and RNAseq data for all miRNAs/mRNA-targets in the “Inverse” and “Unchanged” groups. Table S7. Primers and Oligos. Primers and oligos used in this study. (XLSX 1498 kb)
DOI: 10.6084/m9.figshare.6847943.v1
title: Additional file 1: of Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops

description: Table S1. RNAseq Libraries. Summary statistics of Brachypodium RNAseq libraries. Table S2. BDI Prominence Lvls. miRNA target prediction scores and prominence data for predicted Brachypodium miRNA targets. Table S3. SWI miRNAs. Genomic location, folding data, and sequences of conserved miRNAs found in switchgrass. Table S4. SWI Prominence Lvls. miRNA target prediction scores and prominence data for predicted switchgrass miRNA targets. Table S5. SBI Prominence Lvls. miRNA target prediction scores and prominence data for predicted sorghum miRNA targets. Table S6. Inverse and Unchanged. miRNA target prediction scores, annotation information, PARE data, and RNAseq data for all miRNAs/mRNA-targets in the “Inverse” and “Unchanged” groups. Table S7. Primers and Oligos. Primers and oligos used in this study. (XLSX 1498 kb)
DOI: 10.6084/m9.figshare.6847940
title: MOESM4 of Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors

description: Additional file 4: TableÂ 3. Transcription factors matches for all motifs identified for blue light-regulated genes.
DOI: 10.6084/m9.figshare.6847940.v1
title: MOESM4 of Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors

description: Additional file 4: TableÂ 3. Transcription factors matches for all motifs identified for blue light-regulated genes.
DOI: 10.6084/m9.figshare.6847925
title: MOESM3 of Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors

description: Additional file 3: TableÂ 2. GO term analysis of differentially regulated genes.
DOI: 10.6084/m9.figshare.6847925.v1
title: MOESM3 of Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors

description: Additional file 3: TableÂ 2. GO term analysis of differentially regulated genes.
DOI: 10.6084/m9.figshare.6847901
title: MOESM2 of Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors

description: Additional file 2: TableÂ 1. Significantly differentially expressed genes identified under each comparison.
DOI: 10.6084/m9.figshare.6847901.v1
title: MOESM2 of Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors

description: Additional file 2: TableÂ 1. Significantly differentially expressed genes identified under each comparison.
DOI: 10.6084/m9.figshare.6847895
title: Additional file 1: of Epigenomic profiling of non-small cell lung cancer xenografts uncover LRP12 DNA methylation as predictive biomarker for carboplatin resistance

description: Table S1. Clinical characteristics of the study cohort. Table S2. Response rates of PDXs to carboplatin treatment. Table S7. Carboplatin therapy resistance-associated genes for which promoter DNA methylation is correlated to tumor volume. Table S8. Tumor suppressor genes with significant carboplatin rDMRs and differential expression. (DOC 4660 kb)
DOI: 10.6084/m9.figshare.6847895.v1
title: Additional file 1: of Epigenomic profiling of non-small cell lung cancer xenografts uncover LRP12 DNA methylation as predictive biomarker for carboplatin resistance

description: Table S1. Clinical characteristics of the study cohort. Table S2. Response rates of PDXs to carboplatin treatment. Table S7. Carboplatin therapy resistance-associated genes for which promoter DNA methylation is correlated to tumor volume. Table S8. Tumor suppressor genes with significant carboplatin rDMRs and differential expression. (DOC 4660 kb)
DOI: 10.6084/m9.figshare.6847844
title: Additional file 1: of Early evaluation of experiences of health care providers in reception centers with a patient-held personal health record for asylum seekers: a multi-sited qualitative study in a German federal state

description: Interview guide. (ZIP 30 kb)
DOI: 10.6084/m9.figshare.6847844.v1
title: Additional file 1: of Early evaluation of experiences of health care providers in reception centers with a patient-held personal health record for asylum seekers: a multi-sited qualitative study in a German federal state

description: Interview guide. (ZIP 30 kb)
DOI: 10.6084/m9.figshare.6847796
title: Additional file 1: of ROHHAD and Prader-Willi syndrome (PWS): clinical and genetic comparison

description: Genomic Coordinates for Regions Analyzed for SNORD115 and SNORD116 Clusters (Ensembl GRCh37 Release 89). (XLSX 52 kb)
DOI: 10.6084/m9.figshare.6847796.v1
title: Additional file 1: of ROHHAD and Prader-Willi syndrome (PWS): clinical and genetic comparison

description: Genomic Coordinates for Regions Analyzed for SNORD115 and SNORD116 Clusters (Ensembl GRCh37 Release 89). (XLSX 52 kb)
DOI: 10.6084/m9.figshare.6847778
title: Additional file 1: of RNA-seq assistant: machine learning based methods to identify more transcriptional regulated genes

description: Table S1. Primers for qPCR. Table S2. The list of all features considered prior to feature selection. Table S3. Training and testing data set used for machine learning. Table S4. Summary of feature evaluation. Table S5. Selected features via differential models. Table S6. AUC values of different feature selection methods with combination of different classification methods. Table S7. Predicted genes by the model based on InfoGain feature selection and Logistic Regression. Table S8. GO analysis of predicted genes. (ZIP 215 kb)
DOI: 10.6084/m9.figshare.6847778.v1
title: Additional file 1: of RNA-seq assistant: machine learning based methods to identify more transcriptional regulated genes

description: Table S1. Primers for qPCR. Table S2. The list of all features considered prior to feature selection. Table S3. Training and testing data set used for machine learning. Table S4. Summary of feature evaluation. Table S5. Selected features via differential models. Table S6. AUC values of different feature selection methods with combination of different classification methods. Table S7. Predicted genes by the model based on InfoGain feature selection and Logistic Regression. Table S8. GO analysis of predicted genes. (ZIP 215 kb)
DOI: 10.6084/m9.figshare.6847550
title: Untitled Egg desiccation leads to dehydration and enhanced innate immunity in python embryosItem

description: Data for: "Egg desiccation leads to dehydration and enhanced innate immunity in python embryos"
DOI: 10.6084/m9.figshare.6847544
title: Dataset for: Evolution of dispersal syndrome and its corresponding metabolomic changes

description: Dispersal is one of the strategies for organisms to deal with climate change and habitat degradation. Therefore, investigating the effects of dispersal evolution on natural populations is of considerable interest to ecologists and conservation biologists. Although it is known that dispersal itself can evolve due to selection, the behavioral, life-history and metabolic consequences of dispersal evolution are not well understood. Here we explore these issues by subjecting four outbred laboratory populations of Drosophila melanogaster to selection for increased dispersal. The dispersal-selected populations had similar values of body size, fecundity and longevity as the non-selected lines (controls), but evolved significantly greater locomotor activity, exploratory tendency, and aggression. Untargeted metabolomic fingerprinting through NMR spectroscopy suggested that the selected flies evolved elevated cellular respiration characterized by greater amounts of glucose, AMP and NAD. Concurrent evolution of higher level of Octopamine and other neurotransmitters indicate a possible mechanism for the behavioural changes in the selected lines. We discuss the generalizability of our findings in the context of observations from natural populations. To the best of our knowledge, this is the first report of the evolution of metabolome due to selection for dispersal and its connection to dispersal syndrome evolution.
DOI: 10.6084/m9.figshare.6847550.v1
title: Untitled Egg desiccation leads to dehydration and enhanced innate immunity in python embryosItem

description: Data for: "Egg desiccation leads to dehydration and enhanced innate immunity in python embryos"
DOI: 10.6084/m9.figshare.6847544.v1
title: Dataset for: Evolution of dispersal syndrome and its corresponding metabolomic changes

description: Dispersal is one of the strategies for organisms to deal with climate change and habitat degradation. Therefore, investigating the effects of dispersal evolution on natural populations is of considerable interest to ecologists and conservation biologists. Although it is known that dispersal itself can evolve due to selection, the behavioral, life-history and metabolic consequences of dispersal evolution are not well understood. Here we explore these issues by subjecting four outbred laboratory populations of Drosophila melanogaster to selection for increased dispersal. The dispersal-selected populations had similar values of body size, fecundity and longevity as the non-selected lines (controls), but evolved significantly greater locomotor activity, exploratory tendency, and aggression. Untargeted metabolomic fingerprinting through NMR spectroscopy suggested that the selected flies evolved elevated cellular respiration characterized by greater amounts of glucose, AMP and NAD. Concurrent evolution of higher level of Octopamine and other neurotransmitters indicate a possible mechanism for the behavioural changes in the selected lines. We discuss the generalizability of our findings in the context of observations from natural populations. To the best of our knowledge, this is the first report of the evolution of metabolome due to selection for dispersal and its connection to dispersal syndrome evolution.
DOI: 10.6084/m9.figshare.6847181
title: uniform density kh 128

description: uniform density kh 128
DOI: 10.6084/m9.figshare.6847310
title: Orthofinder Analysis

description: These files are from the Orthogroup analyses of representative NCLDVs.
DOI: 10.6084/m9.figshare.6847310.v1
title: Orthofinder Analysis

description: These files are from the Orthogroup analyses of representative NCLDVs.
DOI: 10.6084/m9.figshare.6847181.v1
title: uniform density kh 128

description: uniform density kh 128
DOI: 10.6084/m9.figshare.6847160
title: Electronic Supplementary Material from A dwarf walrus from the Miocene of Baja California Sur, Mexico

description: Matrix used for phylogenetic analysis
DOI: 10.6084/m9.figshare.6847160.v1
title: Electronic Supplementary Material from A dwarf walrus from the Miocene of Baja California Sur, Mexico

description: Matrix used for phylogenetic analysis
DOI: 10.6084/m9.figshare.6847142
title: ESM Table S2 from A three-dimensionally preserved lobopodian from the Herefordshire (Silurian) Lagerstätte, UK

description: Nexus File
DOI: 10.6084/m9.figshare.6847142.v1
title: ESM Table S2 from A three-dimensionally preserved lobopodian from the Herefordshire (Silurian) Lagerstätte, UK

description: Nexus File
DOI: 10.6084/m9.figshare.6847136
title: ESM Table S1 from A three-dimensionally preserved lobopodian from the Herefordshire (Silurian) Lagerstätte, UK

description: Taxon coding
DOI: 10.6084/m9.figshare.6847136.v1
title: ESM Table S1 from A three-dimensionally preserved lobopodian from the Herefordshire (Silurian) Lagerstätte, UK

description: Taxon coding
DOI: 10.6084/m9.figshare.6846845
title: Dehydration during egg production alters egg composition and yolk immune function

description: Data for: "Dehydration during egg production alters egg composition and yolk immune function"
DOI: 10.6084/m9.figshare.6847103
title: Karst_N_Model

description: This data is uploaded as part of a submission titled "Nitrate Pathways, Processes, and Timing in an Agricultural Karst System: Development and Application of a Numerical Model" to the Water Resources Research journal.
DOI: 10.6084/m9.figshare.6847103.v1
title: Karst_N_Model

description: This data is uploaded as part of a submission titled "Nitrate Pathways, Processes, and Timing in an Agricultural Karst System: Development and Application of a Numerical Model" to the Water Resources Research journal.
DOI: 10.6084/m9.figshare.6845525
title: 16S Mouse data

description: Assembled sequence data for use in Mothur pipeline for mouse hypertension data
DOI: 10.6084/m9.figshare.6845465
title: Supplemental Material for "Associations of Serum Perfluoroalkyl Substance and Vitamin D Biomarker Concentrations in NHANES, 2003-2010.docx"

description: Supplemental Material for the manucript "Associations of Serum Perfluoroalkyl Substance and Vitamin D Biomarker Concentrations in NHANES, 2003-2010"
DOI: 10.6084/m9.figshare.6845465.v1
title: Supplemental Material for "Associations of Serum Perfluoroalkyl Substance and Vitamin D Biomarker Concentrations in NHANES, 2003-2010.docx"

description: Supplemental Material for the manucript "Associations of Serum Perfluoroalkyl Substance and Vitamin D Biomarker Concentrations in NHANES, 2003-2010"
DOI: 10.6084/m9.figshare.6845468.v1
title: Demonstrating your institution’s impact on the ‘real world’ – strategies for success Untitled Item

description: Stacy Konkiel, Director of Research Relations, and Heidi Becker, Product Specialist, from Altmetric & Dimensions explore how the uptake of research by policymakers has changed in recent years with the rise of social media and offer evidence-based practical tips for getting your faculty’s research into policy documents.
DOI: 10.6084/m9.figshare.6845450
title: Fourier analysis applied to <i>Cricetodon</i> and <i>Hispanomys</i> (Rodentia, Mammalia): its use as a taxonomical criterion

description: <i>Cricetodon</i> and <i>Hispanomys</i> are two extinct rodent genera belonging to the same tribe. <i>Cricetodon</i> presents generally a more primitive morphology than <i>Hispanomys</i>. However, they share some traits and some species present a combination of primitive and derived characters (called mosaic morphological pattern) that difficult assessing the evolutionary stage of the species or their attribution into a genus. Fourier Shape Analysis, a geometric morphometrics method, is used to quantify the outline form of the upper first molar of these genera and to differentiate them. New mathematical criterion is obtained to analyse the morphology of this particular species with mosaic morphology. First, the validity of the method is tested with one basal (<i>C. meini</i>) and one derived species (<i>H. aragonensis</i>). Two different outlines are statistically distinguished: straight in <i>Cricetodon</i> and trilobed in <i>Hispanomys</i>. This result allowed us to undertake the study of some other species included in both genera. This complete analysis enabled us to describe the outline of ‘<i>Cricetodon’ klariankae</i> and ‘<i>Cricetodon’ fandli</i>. Both share the same morphospace than the rest of the species of <i>Hispanomys</i>. This could indicate that both species could be included in <i>Hispanomys.</i>
DOI: 10.6084/m9.figshare.6845162
title: Three months of slackline training elicits only task-specific improvements in balance performance

description: Data for "Three months of slackline training elicits only task-specific improvements in balance performance", Giboin, Gruber, Kramer, 2018, Plos One<br>
DOI: 10.6084/m9.figshare.6845111.v1
title: K file in hip fracture crack extension

description: To investigate and simulate the role of cancellous bone in hip fracture in finite element model based on Fracture Mechanics through FE model.It simulate a dynamic fracture extension model in proximal femur.
DOI: 10.6084/m9.figshare.6845099
title: House price and shop consumer data

description: Shop consumer data are collected from a business review website, dianping.com, in China that is similar to Yelp in the US. The data contain five items: station name, every shop name, every shop location, average price of each shop, and review score of each shop.The house price data are collected from a real estate website. They contain three items: station name, house location, and rental or selling price.
DOI: 10.6084/m9.figshare.6845093
title: Kinship analysis and allelic dropout: a forensic approach on an archaeological case

description: <b>Background:</b> This study relies on the discovery of two pit burials (LTA and LTB) of the Bronze Age Cogotas I archaeological culture (<i>circa</i> 3600–2950 BP) in Spain. LTA was a single burial and LTB contained three skeletal remains of two adults and a newborn or foetus at term. <b>Aim:</b> The central question posed by this find was whether the LTB tomb constituted a traditional nuclear family (father, mother and son or daughter). <b>Methods:</b> Ancient and forensic DNA protocols were employed to obtain reliable results. Autosomal, X-STR markers and mitochondrial DNA were amplified. Subsequently, different kinship probabilities were estimated by means of LR values calculated using the Familias 3 software. Furthermore, an allelic dropout sensitivity test was developed in order to evaluate the influence of allelic dropout phenomena on the results. <b>Results:</b> It was possible to determine the molecular sex of all individuals and to establish a maternal relationship between the perinatal individual and one of the adults. <b>Conclusion:</b> The remains in the LTB tomb were not a traditional nuclear family (father, mother and son/daughter) and it was probably a tomb where two women, one of them pregnant, were buried.