cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25217144.v1
title: Supplementary Material for: Body mass index and all-cause mortality in elderly patients with percutaneous coronary intervention: A meta-analysis

description: Background: The ‘obesity paradox’ in elderly patients suffering from percutaneous coronary intervention (PCI) remains a source of controversy. The present meta-analysis focused on exploring the real existence of ‘obesity paradox’ in these patients. Methods: As of November 2022, PubMed, Cochrane and Embase databases were comprehensively searched to identify articles reporting all-cause mortality according to diverse body mass index (BMI) categories after PCI among the old cases developing coronary artery disease (CAD). Summary estimates of risk ratios (RRs) were assigned four BMI groups, including underweight, normal weight, overweight, and obesity groups. Results: There were altogether nine articles involving 25,798 cases selected for further analysis. Relative to normal weight group, overweight and obesity groups had decreased all-cause mortality (RR 0.86, 95%CI 0.77-0.95 for overweight group; RR 0.57,95%CI 0.40-0.80 for obesity group), while underweight group had elevated all-cause mortality (RR 1.52, 95%CI 1.01-2.29). Conclusions: Our study revealed an ‘obesity paradox’ relation of BMI with all-cause mortality in elderly cases receiving PCI. In comparison with normal weight group, overweight and obesity groups had decreased all-cause mortality, while underweight group had increased all-cause mortality.
DOI: 10.25442/hku.16436100.v1
title: Supporting data for "Neural Correlates of Contextually Modulated Depth Perception in Humans"

description: Dataset consists of data obtained from 3 experiments, organised in 3 separate folders. The first folder (Chapter 2) contains behavioural thresholds and neural responses obtained in depth tasks. Data are organised according to subtasks. The second folder (Chapter 3) contains behavioural thresholds and accuracies obtained during transcranial magnetic stimulation, data organised according to subtasks. The last folder (Chapter 4) contains behavioural thresholds and accuracies obtained in depth tasks, data organised accordingly.
DOI: 10.6084/m9.figshare.19681944.v1
title: Supplementary Material for: Cyberbullying and School Bullying Are Related to Additive Adverse Effects among Adolescents

description: <b><i>Introduction:</i></b> The aim of this study was to examine whether (a) cyberbullying has unique associations with mental health problems, risk-taking, and self-harm behavior in victims and perpetrators when compared to school bullying and (b) if cyberbullying is associated with an additional burden for students already involved in school bullying. <b><i>Methods:</i></b> Data were collected from 6,561 students across 23 schools in Germany (grades 5–13). The sample was divided into the following four groups: cyber-only involvement (victims = 1.9%, perpetrators = 0.6%), school-only involvement (victims = 17.2%, perpetrators = 11.9%), dual involvement (victims = 5.7%, perpetrators = 2.9%), and noninvolvement (victims = 75.3%, perpetrators = 84.6%). Multilevel mixed-effects regression analysis was conducted to examine group differences in mental health (Strengths and Difficulties Questionnaire, KIDSCREEN-10), risk-taking, and self-harm behavior (e.g., substance use, suicide attempts). <b><i>Results:</i></b> Cyber-only bullying had unique associations with mental health problems and risk-taking behavior in victims (lower levels of peer relationship problems: <i>p</i> &lt; 0.001, greater substance use: <i>p</i> &lt; 0.05) and perpetrators (higher levels of peer relationship problems: <i>p</i> &lt; 0.05) when compared to school-only bullying. Dual victims and perpetrators reported significantly more mental health problems (victims: χ<sup>2</sup><sub>(5)</sub> = 221.58, <i>p</i> &lt; 0.001; perpetrators: χ<sup>2</sup><sub>(5)</sub> = 116.40, <i>p</i> &lt; 0.001) and were more likely to report risk-taking and self-harm behavior (victims: χ<sup>2</sup><sub>(7)</sub> = 115.15, <i>p</i> &lt; 0.001; perpetrators: χ<sup>2</sup><sub>(7)</sub> = 38.79, <i>p</i> &lt; 0.001) than students involved in school-only bullying. <b><i>Conclusion:</i></b> Cyber-only bullying appears to be related to specific mental health issues beyond those associated with school-only bullying. Cyberbullying and school bullying go along with additive mental health problems, risk-taking, and self-harm behavior in both victims and perpetrators. Thus, bullying prevention and intervention programs should also target cyberbullying.
DOI: 10.6084/m9.figshare.20223318.v1
title: Wine Quality Test

description: part of the dataset supplied in https://www.kaggle.com/datasets/uciml/red-wine-quality-cortez-et-al-2009 https://archive.ics.uci.edu/ml/datasets/wine+quality
DOI: 10.6084/m9.figshare.3808149.v2
title: Supplementary Material for: Electroencephalography Is a Good Complement to Currently Established Dementia Biomarkers

description: <i>Background/Aims:</i> Dementia biomarkers that are accessible and easily applicable in nonspecialized clinical settings are urgently needed. Quantitative electroencephalography (qEEG) is a good candidate, and the statistical pattern recognition (SPR) method has recently provided promising results. We tested the diagnostic value of qEEG-SPR in comparison to cognition, structural imaging, and cerebrospinal fluid (CSF) biomarkers. <i>Methods:</i> A total of 511 individuals were recruited from the multicenter NORD EEG study [141 healthy controls, 64 subjective cognitive decline, 124 mild cognitive impairment, 135 Alzheimer's disease (AD), 15 dementia with Lewy bodies/Parkinson's disease with dementia (DLB/PDD), 32 other dementias]. The EEG data were recorded in a standardized way. Structural imaging data were visually rated using scales of atrophy in the medial temporal, frontal, and posterior cortex. <i>Results:</i> qEEG-SPR outperformed structural imaging, cognition, and CSF biomarkers in DLB/PDD diagnosis, outperformed structural imaging in AD diagnosis, and improved the differential diagnosis of AD. In addition, qEEG-SPR allowed differentiation of two clinically different AD subtypes. <i>Conclusion:</i> Adding qEEG to the diagnostic workup substantially increases the detection of AD pathology even in pre-dementia stages and improves differential diagnosis. EEG could serve as a good complement to currently established dementia biomarkers since it is cheap, noninvasive, and extensively applied outside academic centers.
DOI: 10.6084/m9.figshare.28035431.v1
title: SOR TikTok Data Set

description: Dataset for SORTikTok Project
DOI: 10.6084/m9.figshare.3454961.v1
title: The possible role of extensional faults in localizing magmatic activity: a crustal model for the Campanian Volcanic Zone (eastern Tyrrhenian Sea, Italy)

description: Three crustal geological sections of the Campanian Volcanic Zone (Italy) were reconstructed by integrating basin architecture and deep well stratigraphies. In addition, mapping of the fault system and of large-volume ignimbrites was carried out. A linked fault system has been identified, which was responsible for asymmetric subsidence contemporaneous with the eruption of ignimbrites. Late Quaternary extension is characterized by a WNW–ESE stretching axis, NNE–SSW normal faults and reactivation of inherited structures. Structural, stratigraphic and palaeogeographical analyses reveal evidence for up to 750 m of subsidence, which has occurred at a mean rate of up to 4.9 mm a<sup>−1</sup> over the past 154 ka. These rates suggest that extensional tectonics was responsible for the regional subsidence. A 6 km deep seismic reflector was associated with a magmatic reservoir underlying Campi Flegrei. By matching the structural and stratigraphic architecture with published geophysical and geochemical data a crustal tectonomagmatic model was constructed that displays high-angle faults that root into a low-angle detachment, which in turn roots into a deep sill-like magma reservoir. This model suggests the possible role of extensional faults in localizing magmatic activity, as faults controlled magma rise from deep to shallow reservoirs and to the surface during ignimbrite eruptions.
DOI: 10.6084/m9.figshare.7735016.v1
title: Supplementary Material for: Mutation in <b><i>afsR</i></b> Leads to A-Factor Deficiency in <b><i>Streptomyces griseus</i></b> B2682

description: <b><i>Background/Aims:</i></b> A-factor, a γ-butyrolactone autoregulator, in <i>Streptomyces griseus</i> is involved in the regulation of differentiation and antibiotic production. Here we studied the <i>S. griseus</i> B2682-AFN (A-factor negative) bald mutant that harbors a nonsense mutation in the <i>afsR</i> gene encoding a pleiotropic regulator. Our aim was to prove that this mutation is the cause of the A-factor deficiency in AFN. We also studied whether AfsR regulates A-factor production by AfsA, which is supposed to be the only specific key enzyme in A-factor biosynthesis. <b><i>Methods:</i></b> Wild <i>afsR</i> was cloned to the pHJL401 shuttle vector and was transformed to the <i>S. griseus</i> AFN and B2682 strains. During phenotypic characterization, sporulation, antibiotic, protease, A-factor, and AfsA protein production were studied. <b><i>Results:</i></b> Transformation of AFN by a wild <i>afsR</i> restored its phenotype including sporulation, antibiotic, extracellular protease, and A-factor production. Introduction of <i>afsR</i> to the B2682 wild-type strain resulted in antibiotic and extracellular protease overproduction that was accompanied with an elevated A-factor level. AfsA was detected both in AFN and B2682. <b><i>Conclusions:</i></b> AfsR has an effect on the regulation of A-factor production in <i>S. griseus</i>. The presence of AfsA is not sufficient for normal A-factor production. AfsR regulates A-factor biosynthesis independently of AfsA.
DOI: 10.6084/m9.figshare.26594156.v1
title: Additional file 1 of Comprehensive analysis of geographic and breed-purpose influences on genetic diversity and inherited disease risk in the Doberman dog breed

description: Additional file 1.
DOI: 10.6084/m9.figshare.12899966.v1
title: Analyzed smFISH Dataset

description: This datatable contains all excitatory cells (<i>slc17a7+</i>) across anterior, intermediate, and posterior sections of the basolateral amygdala. Metadata includes:<br>- <b>gene</b>: denotes gene expressed within given cell- <b>quant</b>: quantified expression of a given gene, normalized so that quantification of each gene adds to 1 for a given cell- <b>X </b>& <b>Y</b>: cell position in space- <b>position</b>: denotes which section the cells came from (anterior intermediate, or posterior)- <b>tsne1 </b>& <b>tsne2</b>: plot these to get tsne visualization (perplexity = 35, max iteration = 6350)- <b>cluster: </b>cells labelled cluster 1-6 - according to hierarchical clustering (distance = Euclidean, method = Ward D2)
DOI: 10.6084/m9.figshare.25816273.v1
title: Supplementary Material for: M6A RNA methylation-mediated dysregulation of AGAP2-AS1 promotes trastuzumab resistance of breast cancer

description: Introduction: Trastuzumab is commonly used in the treatment of human epidermal growth factor receptor-2 positive (HER-2+) breast cancer patients, but its efficacy is often limited by chemotherapy resistance. Recent studies indicate that long noncoding RNAs (lncRNAs) play important roles in tumor progression and response to therapy. However, the regulatory mechanism of lncRNAs in trastuzumab resistance is still unknown to date. Methods: qPCR was performed to detect the expression of related genes. Western blot and immunofluorescence assays were used for the evaluation of protein expression levels. A series of gain- or loss-functional assays confirmed the function of AGAP2-AS1 in trastuzumab resistance, both in vitro and in vivo. RNA immunoprecipitation and pulldown analysis was conducted to verify the interaction between METTL3/YTHDF2 and lncRNA AGAP2-AS1. , Results: AGAP2-AS1 was upregulated in trastuzumab-resistant cells and SKBR-3R-generated xenograft in nude mice. Silence of AGAP2-AS1 significantly decreased trastuzumab-induced cell cytotoxicity both in vitro and in vivo. The m6A methylation of AGAP2-AS1 was found to be reduced in trastuzumab resistant cells compared to parental cells. In addition, METTL3 increased the m6A methylation of AGAP2-AS1, which finally induced the suppression of AGAP2-AS1 expression. Moreover, YTHDF2 was essential for METTL3-mediated m6A methylation of AGAP2-AS1. Functionally, AGAP2-AS1 regulated trastuzumab resistance via inducing autophagy and increasing ATG5 protein level. Conclusion: Taken together, we proved that METTL3/YTHDF2-mediated m6A methylation indued the increased expression AGAP2-AS1, which could promote the trastuzumab resistance of breast cancer. In addition, AGAP2-AS1 also regulates trastuzumab resistance via inducing autophagy. Therefore, AGAP2-AS1 may be promising predictive biomarker and therapeutic target breast cancer patients.
DOI: 10.6084/m9.figshare.3512309.v1
title: Supplement 1. Winbugs version 1.4 code for the Cormack-Jolly-Seber model with random effects and its modification for accommodating handling effects at State Pond.

description: File List WinbugsStatePond.txt – Winbugs 1.4 code as text. WinbugsStatePond.zip – All files at once. Description The WinbugsStatePond.txt file contains two models which may be pasted into the Winbugs 1.4 software to perform the capture–recapture analyses described in the original paper for State Pond. The response X, a matrix, is not the standard capture history matrix. Instead, X indicates the capture history which appears following the Bugs language comment symbol (#) in the 8 lines which relate survival (psi), capture probability (p), and chi parameters to the multinomial cell probabilities (theta). Random effects (g) of release groups, and the covariate data, svl, Date, Stage, Trial and Release are related to survival, capture or chi probabilities using the logit link. Further documentation is provided in the text file itself.
DOI: 10.6084/m9.figshare.28297412.v1
title: Cross-Cultural Adaptations of the Shoulder Questionnaires Adapted Into Turkish That Used the Translation-Based Approach Related To The Guidelines For the Process of Cross-Cultural Adaptation of Self-Report Measures..docx

description: <b>Assessment of cross-cultural adaptations and patient-reported outcome measures relevant to shoulder disorders in Turkish: A systematic review using the COSMIN methodology.</b>
DOI: 10.6084/m9.figshare.17021903.v2
title: sing environmental awareness and product development are two separate and costly investments that many small and medium-

description: Raising environmental awareness and product development are two separate and costly investments that many small and medium-sized fashion businesses cannot afford to achieve sustainability. Therefore, there is a need to decide which factors more significantly impact consumer loyalty and purchase intention toward eco-friendly fashion. Thus, the study employs a mixed-methods approach to research how customers' perception about product-service quality and their environmental awareness and pro-environmental behavior impact purchase intention and customer loyalty toward eco-friendly fashion products among Vietnamese Gen Z's. Most interviewees acknowledged that their primary source of knowledge for eco-friendly fashion was social media. The qualitative results further show that the knowledge and attitude toward eco-friendly fashion practices are insufficient to convince young customers to afford eco-friendly fashion products. The quantitative results show that while customer-related factors play a more significant role in stimulating purchase intention, only product-service quality factors impact loyalty. Hence, the study suggests that businesses should prioritize improving service and product quality rather than funding green marketing when targeting the Vietnamese Gen Z. Government should prioritize financial and technological support for fashion firms to develop high-quality eco-friendly fashion to ensure the availability of products in the market.
DOI: 10.6084/m9.figshare.21175492.v1
title: Soil biodiversity, plant diversity, and ecosystem functioning of urban greenspaces

description: This excel file includs soil biodiversity across biomes, plant diversity, and the microbial functional traits, and also includs multiple ecosystem functions.
DOI: 10.6084/m9.figshare.12698354.v1
title: Supplemental_Tables_S1-S4.xlsx

description: These tables include the RNA-seq and differentially expression results from "Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum" but Govindarajulu et al. BioRxiv: https://doi.org/10.1101/2020.07.06.189548
DOI: 10.6084/m9.figshare.23647053.v1
title: my-pkg-2

description: example data package (local version)
DOI: 10.6084/m9.figshare.24152901.v1
title: Microbial sequencing data

description: It contains raw data after microbial sequencing QC. Bacteria are mainly based on the 16S region, fungi are mainly based on the ITS region (internal transcribed inter region), and eukaryotes are mainly based on the 18S region for sequencing analysis.
DOI: 10.6084/m9.figshare.16934326.v2
title: Noise_correlation_paper_monkey_raw_data

description: This is the raw data of Monkey (Monkey B ang G) V4 linear-array recording during a spatial attention task(NA Steinmetz, T Moore Neuron 83 (2), 496-506, https://doi.org/10.1016/j.neuron.2014.06.014)
DOI: 10.6084/m9.figshare.5136127.v2
title: Genome annotation sugarcane cultivar SP80-3280 (Gene functional annotation)

description: Functional annotation of the high quality gene prediction for sugarcane cultivar SP80-3280. Methods employed BLAST2GO, PlnTFDB, EggNOG, OrthoMCL
DOI: 10.6084/m9.figshare.11705445.v1
title: HHI_csv_files.zip

description: HHI and price data by year and by country for elemental production worldwide taken from USGS mineral commodity yearbooks.
DOI: 10.6084/m9.figshare.23694741.v1
title: Data Seroprevalence of anti-SARS-CoV-2 HCWs Central African Republic.xls

description: These data are collected during two consecutive seroprevalence of SARS-CoV-2 antibodies surveys in Health Care Workers (HCWs) before and after anti-COVID-Vaccination: demographic data (sex and age) and qualification of the participating HCWs and blood sample of approximately 1 to 2 mL was taken in a dry tube and sent to the Institut Pasteur of Bangui. The miniVidas was used for assessing SARS-CoV-2 IgM and IgG (Spike protein by enzyme-linked fluorescent assay (ELFA).
DOI: 10.6084/m9.figshare.26954611.v1
title: Transcripts for <b>Experiences of Plus-size Women Using Ozempic to Manage Weight and Well-being</b>

description: Transcripts for <b>Experiences of Plus-size Women Using Ozempic to Manage Weight and Well-being</b>
DOI: 10.6084/m9.figshare.12443891.v1
title: JARVIS-DFT-DFPT (JVASP-5806 to JVASP-9754)

description: DFPT input/output files from JARVIS-DFT
DOI: 10.6084/m9.figshare.1539461.v1
title: Raw data Table 4. Multiple linear regression analyses (robust variance estimates) to detect intervention effects regarding health, symptoms of depression and perceived control for both patients and partners

description: Raw data Table 4. Multiple linear regression analyses
DOI: 10.26180/28847315.v1
title: Inactivity detection in the home

description: This research views abnormally long periods of inactivity as indicators of unsafe situations, and presents three models of the distribution of inactivity periods obtained from unintrusive sensor observations.
DOI: 10.6084/m9.figshare.20193092.v2
title: Understanding Energy Pathways in the Gulf Stream

description: The files allow you to reproduce the figures presented in "Understanding Energy Pathways in the Gulf Stream".
DOI: 10.6084/m9.figshare.21716342.v2
title: C-iTRACE DIC d13C Ocean

description: Ocean d13C from an isotope enabled coarse resolution (3˚), ocean-only simulation run from the LGM (22ka) to present day using iPOP2. Reprocessed original netcdf3 file to netcdf4 using Xarray
DOI: 10.6084/m9.figshare.25053986.v3
title: "<b>Dam-calf contact rearing in Switzerland: Aspects of management and milking" - Supplemental material</b>

description: These tables present the supplements 1 and 2 to our manuscript "Dam-calf contact rearing in Switzerland: Aspects of management and milking". In includes results from the first part on our study on milkability in dam-calf contact systems in Switzerland. Supplement 1 shows the perceptions of the own dam-calf contact (DCC) system of the 17 interviewed DCC farmers. Supplement 2 demonstrates additional information given by the 1 farmers during the interview on weaning and milking.
DOI: 10.6084/m9.figshare.5129836.v1
title: Supplementary Material for: Lipid Transfer Protein Syndrome in a Non-Mediterranean Area

description: <b><i>Background:</i></b> Plant food allergies associated with lipid transfer protein (LTP) have been widely described in the Mediterranean Basin. <b><i>Objective:</i></b> The aim of this work was to describe the clinical profile and pollen sensitization of plant food- allergic patients sensitized to LTP in a non-Mediterranean area. <b><i>Methods:</i></b> Patients with clear IgE-mediated symptoms associated with plant foods and a positive skin prick test (SPT) to Pru p 3 were included in a prospective study in the north of Spain. Reported symptoms were analyzed together with a battery of food and pollen SPTs and specific IgE components by ISAC microarray. Cross-inhibition studies were performed by ImmunoCAP with plane tree, mugwort and rPru p 3. <b><i>Results:</i></b> Among the 72 patients included, the most frequent food allergy reported was to peaches (69%) followed by nuts (walnuts 55%, peanuts 54% and hazelnuts 43%). Most patients suffered from symptoms with multiple plant foods (a median of 6 foods per patient). Regarding the patients' pollen sensitization, 36% were sensitized to mugwort pollen (72% showing sIgE to Art v 3), 33% to grass pollen and 24% to plane tree pollen (94% with sIgE to Pla a 3). Inhibition studies showed that specific IgEs against mugwort and plane tree pollen are inhibited by Pru p 3 in a strong manner, whereas Pru p 3 was less inhibited by pollen extracts. <b><i>Conclusions:</i></b> LTP syndrome occurs in a non-Mediterranean area and is related to multiple sensitizations to foods and pollens such as plane tree and mugwort. In these pollen sensitizations, Pru p 3 seems to be the primary sensitizer.
DOI: 10.6084/m9.figshare.11473779.v4
title: Pinch Force and Endurance among Young and Elderly People

description: This data is from an experiment which measures the finger pinch endurance time and force of elderly and young people.<br>
DOI: 10.6084/m9.figshare.28586423.v1
title: Cable-catch retrofit - Cable forces.csv

description: Data from the experimental testing of cable catch retrofits, providing the recorded forces.
DOI: 10.6084/m9.figshare.26362630.v1
title: Data of <i>Urinary high-risk HPV DNA detection to enhance cervical cancer screening in developing countries</i>

description: This dataset comprises raw data collected during a clinical trial assessing the effectiveness of urinary high-risk HPV DNA detection to improve cervical cancer screening in developing countries. The trial aimed to evaluate the feasibility and accuracy of a non-invasive urine collection method paired with a novel multiplex qPCR test developed by a local Indonesian company. The dataset is provided in CSV format. <br>Should you require any further information regarding the data, please do not hesitate to reach out to us.