cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16536171.v1
title: Model data and electrophysiological recordings for Szabó et al. PLoS Comp Biol 2021 paper

description: Model data and electrophysiological recordings are as 4-byte floating point real numbers (single). The electrophysiological data were acquired by the data acquisition program DASYLab 11.<br>
DOI: 10.5281/zenodo.5372803
title: Nickel and chromium stable isotopic composition of ureilites: implications for the Earth's core formation and differentiation of the ureilite parent body

description: We report the first Ni and Cr stable isotope data for ureilite meteorites that are the mantle residue of a carbon-rich differentiated planet. Ureilites have similar Ni stable isotope compositions as chondrites, suggesting the core-mantle differentiation of ureilite parent body did not fractionate Ni isotopes. Since the size of Earth is potentially larger than that of ureilite parent body (UPB; with diameter &gt; 690 km), resulting in higher temperatures at the core-mantle boundary of Earth, it can be predicted that the terrestrial core formation may not directly cause Ni stable isotope fractionation. On the other hand, we also report high-precision Cr stable isotope composition of ureilites, including one ureilitic trachyandesite (ALM-A) that is enriched in lighter Cr stable isotopes relative to the main-group ureilites, which suggests the partial melting occurred on UPB. The globally heavy Cr in the UPB compared to chondrites can be caused by sulfur-rich core formation processes.
DOI: 10.5281/zenodo.5372802
title: Nickel and chromium stable isotopic composition of ureilites: implications for the Earth's core formation and differentiation of the ureilite parent body

description: We report the first Ni and Cr stable isotope data for ureilite meteorites that are the mantle residue of a carbon-rich differentiated planet. Ureilites have similar Ni stable isotope compositions as chondrites, suggesting the core-mantle differentiation of ureilite parent body did not fractionate Ni isotopes. Since the size of Earth is potentially larger than that of ureilite parent body (UPB; with diameter &gt; 690 km), resulting in higher temperatures at the core-mantle boundary of Earth, it can be predicted that the terrestrial core formation may not directly cause Ni stable isotope fractionation. On the other hand, we also report high-precision Cr stable isotope composition of ureilites, including one ureilitic trachyandesite (ALM-A) that is enriched in lighter Cr stable isotopes relative to the main-group ureilites, which suggests the partial melting occurred on UPB. The globally heavy Cr in the UPB compared to chondrites can be caused by sulfur-rich core formation processes.
DOI: 10.5281/zenodo.5371868
title: L-band sounding data

description: L-band sounding data
DOI: 10.5281/zenodo.5371867
title: L-band sounding data

description: L-band sounding data
DOI: 10.5281/zenodo.5381472
title: Zoanthus pulchellus SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5381471
title: Zoanthus pulchellus SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5379186
title: Online Package for the manuscript "Continuous Integration and Delivery for Cyber-Physical systems: A Grounded-Theory"

description: This package contains the material of the (grounded theory) study related to the paper "Continuous Integration and Delivery for Cyber-Physical systems: A Grounded-Theory" The content of the various files and directories is detailed in the following. InterviewStructure.pdf: complete interview structure (the paper reports an overview in Table 1) open_coding/: this directory contains details from the open coding procedure. In particular:<br> - AllCodesUsedWhileCodingAndMapping.csv contains the list of all codes generated during the open coding, with a symbol near each one (first column) then used to compute the inter-rater agreement<br> - first_round.csv, second_round.csv, third_round.csv, fourth_round.csv: files used to compute the inter_rater agreement <br> CodesContributingToMindMap.csv: final set of codes, that contributed to the taxonomy (see below) FinalCodingTraceability.csv: this file describes how the final set of codes is traced onto the ten interviews. Note that, at this stage, the transcripts have been redacted for confidentiality purposes. MindMap_Complete.pdf: complete taxonomy of codes, in the form of a mind map. The one reported in the paper (Figure 2) cuts leaves, unless (as for benefits, for example) they are necessary to properly describe and understand the category. Also, note that the complete mind map separates the benefits into "actual" and "expected" (based on what was collected from the interviews) whereas the summary mindmap shown in the paper (Figure 2) does not make this distinction. 6C_Diagrams/ : This directory contains the detailed 6C diagrams (i.e., each box related to a "C" contains the list of codes pertaining to it) for the three dimensions investigated in the paper and addressed in RQ1, RQ2, and RQ3.
DOI: 10.5281/zenodo.5379185
title: Online Package for the manuscript "Continuous Integration and Delivery for Cyber-Physical systems: A Grounded-Theory"

description: This package contains the material of the (grounded theory) study related to the paper "Continuous Integration and Delivery for Cyber-Physical systems: A Grounded-Theory" The content of the various files and directories is detailed in the following. InterviewStructure.pdf: complete interview structure (the paper reports an overview in Table 1) open_coding/: this directory contains details from the open coding procedure. In particular:<br> - AllCodesUsedWhileCodingAndMapping.csv contains the list of all codes generated during the open coding, with a symbol near each one (first column) then used to compute the inter-rater agreement<br> - first_round.csv, second_round.csv, third_round.csv, fourth_round.csv: files used to compute the inter_rater agreement <br> CodesContributingToMindMap.csv: final set of codes, that contributed to the taxonomy (see below) FinalCodingTraceability.csv: this file describes how the final set of codes is traced onto the ten interviews. Note that, at this stage, the transcripts have been redacted for confidentiality purposes. MindMap_Complete.pdf: complete taxonomy of codes, in the form of a mind map. The one reported in the paper (Figure 2) cuts leaves, unless (as for benefits, for example) they are necessary to properly describe and understand the category. Also, note that the complete mind map separates the benefits into "actual" and "expected" (based on what was collected from the interviews) whereas the summary mindmap shown in the paper (Figure 2) does not make this distinction. 6C_Diagrams/ : This directory contains the detailed 6C diagrams (i.e., each box related to a "C" contains the list of codes pertaining to it) for the three dimensions investigated in the paper and addressed in RQ1, RQ2, and RQ3.
DOI: 10.25646/8987
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.5281/zenodo.5336271
title: MPIData: Easy Axis Orientation Estimation

description: This data repository contains magnetic particle imaging data. The files are stored in the MDF file format and the folder structure is organized as an MDF store. The data is used in this code example.
DOI: 10.5281/zenodo.5336270
title: MPIData: Easy Axis Orientation Estimation

description: This data repository contains magnetic particle imaging data. The files are stored in the MDF file format and the folder structure is organized as an MDF store. The data is used in this code example.
DOI: 10.5281/zenodo.5382238
title: Arius berneyi RB0526 NOVOGENE SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5382237
title: Arius berneyi RB0526 NOVOGENE SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5376257
title: Bridging Pre-trained Models and Downstream Tasks for Source Code Understanding

description: Datasets for the paper "Bridging Pre-trained Models and Downstream Tasks for Source Code Understanding"
DOI: 10.5281/zenodo.5376256
title: Bridging Pre-trained Models and Downstream Tasks for Source Code Understanding

description: Datasets for the paper "Bridging Pre-trained Models and Downstream Tasks for Source Code Understanding"
DOI: 10.25934/00005037.0
title: Available IPD datapackage for study 'A Multi-centre, Randomised, Double-blind, Parallel Active-controlled Study Evaluating the Efficacy, Safety and Tolerability of Bupropion Hydrochloride Extended-release (Bupropion XL 300mg Once Daily), Escitalopram Oxalate (Escitalopram, 10mg-20mg Once Daily) in Subjects With Major Depressive Disorder'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005037.1
title: IPD datapackage for study 'A Multi-centre, Randomised, Double-blind, Parallel Active-controlled Study Evaluating the Efficacy, Safety and Tolerability of Bupropion Hydrochloride Extended-release (Bupropion XL 300mg Once Daily), Escitalopram Oxalate (Escitalopram, 10mg-20mg Once Daily) in Subjects With Major Depressive Disorder' and research request: 'Choosing the Right Antidepressant for Depressive Disorder in Adults: Individual Patient Data Network Meta-Analysis'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5281/zenodo.5071389
title: Human data - Functionally homologous representation of vocalizations in the auditory cortex ofhumans and macaques

description: Human dataset used in the article Bodin et al., Functionally homologous representation of vocalizations in the auditory cortex of humans and macaques, Current Biology (2021), https://doi.org/10.1016/j.cub.2021.08.043
DOI: 10.5281/zenodo.5071388
title: Human data - Functionally homologous representation of vocalizations in the auditory cortex ofhumans and macaques

description: Human dataset used in the article Bodin et al., Functionally homologous representation of vocalizations in the auditory cortex of humans and macaques, Current Biology (2021), https://doi.org/10.1016/j.cub.2021.08.043
DOI: 10.5281/zenodo.5074859
title: Macaque data - Functionally homologous representation of vocalizations in the auditory cortex ofhumans and macaques

description: Macaque dataset used in the article Bodin et al., Functionally homologous representation of vocalizations in the auditory cortex of humans and macaques, Current Biology (2021), https://doi.org/10.1016/j.cub.2021.08.043
DOI: 10.5281/zenodo.5074858
title: Macaque data - Functionally homologous representation of vocalizations in the auditory cortex ofhumans and macaques

description: Macaque dataset used in the article Bodin et al., Functionally homologous representation of vocalizations in the auditory cortex of humans and macaques, Current Biology (2021), https://doi.org/10.1016/j.cub.2021.08.043
DOI: 10.25934/00005083.0
title: Available IPD datapackage for study 'An eight-week double-blind study comparing the effects of 20 mg of paroxetine to 150 mg of Wellbutrin SR in patients with Major Depressive Disorder'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005083.1
title: IPD datapackage for study 'An eight-week double-blind study comparing the effects of 20 mg of paroxetine to 150 mg of Wellbutrin SR in patients with Major Depressive Disorder' and research request: 'Choosing the Right Antidepressant for Depressive Disorder in Adults: Individual Patient Data Network Meta-Analysis'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.12443228.v1
title: Clay

description: The repository contains data used for submitted study.
DOI: 10.6084/m9.figshare.16554003
title: Electrophysiological recordings for the Szabó et al. 2021 PLoS Comp Biol paper

description: Whole-cell patch clamp and dynamic clamp recordings are recorded by the data acquisition program DASYLab 11. The data are saved as 4-byte floating point real (single) values.<br>
DOI: 10.5281/zenodo.5383147
title: Coordinating directional switches in pigeon flocks: The role of nonlinear interactions

description: MatLab Code for paper "Coordinating directional switches in pigeon flocks: The role of nonlinear interactions".
description: To validate the model proposed by our paper, we used the dataset of pigeon flock collected by Prof. Tamás Vicsek. Unfortunately, we can only upload the truncated dataset in ./coordinationData with our code for copyright issues. The complete pigeon flock dataset is available here after sending request e-mail to nagymate@hal.elte.hu.
DOI: 10.5281/zenodo.5383146
title: Coordinating directional switches in pigeon flocks: The role of nonlinear interactions

description: MatLab Code for paper "Coordinating directional switches in pigeon flocks: The role of nonlinear interactions".
description: To validate the model proposed by our paper, we used the dataset of pigeon flock collected by Prof. Tamás Vicsek. Unfortunately, we can only upload the truncated dataset in ./coordinationData with our code for copyright issues. The complete pigeon flock dataset is available here after sending request e-mail to nagymate@hal.elte.hu.
DOI: 10.5281/zenodo.5382874
title: Bartramia longicauda SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5382873
title: Bartramia longicauda SPAdes preassembly

description: .
DOI: 10.34740/kaggle/dsv/2580892
title: 2021 World Population (updated daily)
DOI: 10.6073/pasta/73499577fa03ee745fbcf56f98f0a73c
title: GIS Shapefile - Soil, Sampling locations, Baltimore City

description: Soil_Samples_BACI Available only by request on a case by case basis. Contact rthe author, David Nowak, at dnowak@fs.fed.us Tags Biophysical Resources, Land, Social Institutions, Health, BES, Soil, Lead, Sample, UFORE Summary Samples were taken to relate soil data to vegetation data obtained for the Urban Forestry Effects Model (UFORE). Description The data is soil concentrations and characteristics of the following: land use, bulk density, sand, silt, clay, pH, organic matter, nitrogen, Al, P, S, Ti, Cr, Mn, Fe, Co, Ni, Cu Zn, Mo, Pb, Cd, Na, Mg, K, Ca, and V. Soils were sampled in 125 plots located within the City of Baltimore in the summer of 2000. The plots were randomly stratified by Anderson Land Cover Classification System Level II, which included commercial, industrial, institutional, transportation right-of-ways, high and medium density residential (there were no low density residential areas identified within the city boundaries), golf course, park, urban open, forest, and wetland land-use types. The number of plots situated in each land-use type was weighted to their proportion of spatial area within the City. The resultant number of plots sampled for soil by land-use type was: commercial (n = 2); industrial (n = 3); institutional (n = 10); transportation right-of-ways (n = 7); high density residential (n = 19); medium density residential (n = 33); golf course (n = 3); riparian (n=2); park (n = 10); urban open (n = 10); and forest (n = 26) land-use types, respectively. The distribution of plots represents the proportion of area covered by impervious surfaces. Credits Rich Pouyat, USDA Forest Service Use limitations Not for profit use only Extent West -76.711030 East -76.530612 North 39.371355 South 39.200686 Scale Range There is no scale range for this item. The data is soil concentrations and characteristics of the following: land use, bulk density, sand, silt, clay, pH, organic matter, nitrogen, Al, P, S, Ti, Cr, Mn, Fe, Co, Ni, Cu Zn, Mo, Pb, Cd, Na, Mg, K, Ca, and V. Soils were sampled in 125 plots located within the City of Baltimore in the summer of 2000. The plots were randomly stratified by Anderson Land Cover Classification System Level II, which included commercial, industrial, institutional, transportation right-of-ways, high and medium density residential (there were no low density residential areas identified within the city boundaries), golf course, park, urban open, forest, and wetland land-use types. The number of plots situated in each land-use type was weighted to their proportion of spatial area within the City. The resultant number of plots sampled for soil by land-use type was: commercial (n = 2); industrial (n = 3); institutional (n = 10); transportation right-of-ways (n = 7); high density residential (n = 19); medium density residential (n = 33); golf course (n = 3); riparian (n=2); park (n = 10); urban open (n = 10); and forest (n = 26) land-use types, respectively. The distribution of plots represents the proportion of area covered by impervious surfaces.
DOI: 10.6084/m9.figshare.14785692
title: An indicator to characterize hydrological alteration due to hydropeaking

description: Hydropeaking by hydroelectric facilities generates sudden changes in river flows and can affect the composition, abundance and structure of fish and invertebrate populations over long distances. To assess the level of hydrological alteration, as a factor of risk of biological impacts, a synthetic indicator was developed. Based on the analysis of 97 hydrometric stations and 1575 years of unaltered flow data, rates of change in flow were calculated. Formulas representing the fastest natural variations, depending on the mean stream flow, the type of variation (increase or decrease) and the range of variation were established. Based on the analysis of 80 hydrometric stations and 491 years of flow data affected by hydropeaking, a method was developed to identify hydropeaks, essentially defined as variations with a rate of change greater than the maximum natural value computed using the formulas. A synthetic indicator differentiating five levels of hydrological alteration was developed using linear discriminant analysis based on five parameters characterizing hydropeaking regimes. Examples show that this indicator is sensitive to changes in the management of hydroelectric facilities and provides information on the spatial and temporal evolutions in hydropeaking regimes, including the progressive attenuation during downstream propagation.
DOI: 10.6084/m9.figshare.14785692.v1
title: An indicator to characterize hydrological alteration due to hydropeaking

description: Hydropeaking by hydroelectric facilities generates sudden changes in river flows and can affect the composition, abundance and structure of fish and invertebrate populations over long distances. To assess the level of hydrological alteration, as a factor of risk of biological impacts, a synthetic indicator was developed. Based on the analysis of 97 hydrometric stations and 1575 years of unaltered flow data, rates of change in flow were calculated. Formulas representing the fastest natural variations, depending on the mean stream flow, the type of variation (increase or decrease) and the range of variation were established. Based on the analysis of 80 hydrometric stations and 491 years of flow data affected by hydropeaking, a method was developed to identify hydropeaks, essentially defined as variations with a rate of change greater than the maximum natural value computed using the formulas. A synthetic indicator differentiating five levels of hydrological alteration was developed using linear discriminant analysis based on five parameters characterizing hydropeaking regimes. Examples show that this indicator is sensitive to changes in the management of hydroelectric facilities and provides information on the spatial and temporal evolutions in hydropeaking regimes, including the progressive attenuation during downstream propagation.
DOI: 10.6084/m9.figshare.12972870
title: Consistent but secondary influence of hydropeaking on stream fish assemblages in space and time

description: Hydropeaking corresponds to rapid artificial discharge variations, designed to address sub-daily peaks in electricity demand. It generates rapid changes in physical habitat (e.g., flow velocity and water depth) with potential impacts on stream assemblages. For assessing the generality of hydropeaking effects on fish assemblages, we present an original combination of spatial (among 45 reaches, including six groups of nearby reaches) and temporal (over 3-17 years) analyses of these effects. Our analyses involved descriptions of natural and artificial hydraulic variations in reaches, obtained after translating hourly discharge data into hydraulics. We found that the influence of hydropeaking was secondary compared to well-known spatial variations in fish assemblage structure along longitudinal gradients, and negative influences of floods on annual densities. However, the spatial and temporal analyses consistently suggested that hydropeaking may disfavour fish species typical of medium-sized streams relative to species of headwater streams (<i>Salmo trutta, Phoxinus phoxinus, Cottus gobio</i>). The magnitude of hydropeaking effects observed here, as well as an apparent weaker effect of ramping rates than the frequency of hydropeaks, may be due to lower ramping rates in our data set than in other studies.