cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/jh7f7wkfxm
title: Data for: Image Processing and Machine Learning to investigate fibre distribution on fibre-reinforced shotcrete Round Determinate Panels

description: Synthetic fibres in fibre-reinforced concrete or shotcrete improve the ductility of the composite material by transferring tensile stresses once the concrete is cracked. While bridging the crack, synthetic fibres typically fails in two ways: they either snap or pull-out. This folder contains a sample of images of fibres grouped by "snap" and "pull-out". These images can be used to train a Machine Learning algorithm to automatically classify the fibres' mode of failure.
DOI: 10.17632/pcy5xgdn5v
title: Dataset on storage stability and quality changes of achira (Canna edulis K.) biscuits: water adsorption isotherms and machine learning-based shelf-life monitoring

description: This dataset provides comprehensive information on the storage stability and quality changes of achira (Canna edulis K.) biscuits, incorporating experimental data and digital models for in-depth analysis. It includes initial characterization data, covering color properties, moisture content, water activity, and texture. Additionally, the dataset contains mid-infrared spectra obtained using Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) spectroscopy to characterize the biscuits spectrally. The water adsorption isotherms were determined using the Dynamic Dewpoint Isotherm (DDI) method, considering a water activity range from 0.1 to 0.8 at temperatures of 25, 35, and 45 ºC. To enhance predictive modeling, the dataset includes MATLAB code for Support Vector Machine (SVM) modeling, which was used to model adsorption isotherms and optimize the predictive capability of this technique. Additionally, storage assessment data track quality changes over time by analyzing variations in color, moisture content, water activity, texture, and sensory quality of packaged biscuits. Finally, MATLAB-based digital models have been developed to describe and optimize quality changes during storage, providing a model-based approach for understanding and improving product stability. This dataset serves as a valuable resource for researchers studying food stability, predictive modeling, and shelf-life optimization strategies.
DOI: 10.17632/8sf9djny3m
title: Data for: Crying helps, but being sad doesn't: Infants constrain nominal reference using known verbs, not known adjectives
DOI: 10.6084/m9.figshare.20444748.v1
title: Chronic pain neuroscience and psychoanalytic theory a narrative review

description: Chronic pain is felt in the body and in the mind. S. Freud, J. Lacan, neurophysiologists, and societies for the study of pain have each explained it to us independently with little success when facing the complexity of this condition by patients and health personnel who care for them, but there are these theories, and you must begin to take them all into account to understand pain in its entirety.
DOI: 10.6084/m9.figshare.21685892.v1
title: Gills, growth, and activity across fishes

description: Data associated with <br> Bigman, Jennifer S., Wegner, Nicholas, C., and Dulvy, Nicholas, K. 2023. Gills, growth, and activity across fishes. <em>Fish and Fisheries. </em>
DOI: 10.6084/m9.figshare.23622507.v1
title: Table S1: Data Sources for DrosOMA, the Drosophila Orthologous Matrix browser

description: DrosOMA - the Drosophila Orthologous Matrix browser presents the results of orthology delineation for 36 drosophilids from across the genus and four outgroup dipterans. All sequence data used to build the DrosOMA browser database were originally sourced from a public repository, the United States National Center for Biotechnology Information (NCBI). The sources for which have been compiled and are provided in this dataset.
DOI: 10.6084/m9.figshare.25340890.v6
title: Data for ["Fast recovery of North Atlantic sea level in response to atmospheric CO2 removal"]

description: We used the Community Earth System Model, Version 1.2 (CESM1.2) (Hurrell et al., 2013), which includes the Community Atmospheric Model Version 5 (CAM5), the Community Land Model Version 4 (CLM4), the Community Ice Code Version 4 (CICE4), and the Parallel Ocean Version 2 (POP2). The CAM5 and CLM4 have a horizontal resolution of ~1°x1° and 30 vertical levels (Neale et al., 2010). The CICE4 and POP2 have 60 vertical levels, with a longitudinal resolution of 1° (the latitudinal resolution was ~1/3° near the equator and gradually increased to ~1/2° near the poles), with 60 vertical ocean levels (Smith et al., 2010).We performed two types of idealized climate model simulations. First, we integrated a 900-year long present-day (PD) control experiment with an atmospheric CO2 concentration of 367 ppm. We then conducted a CO2 ramp-up and ramp-down experiment for 500 years, branching from the 28 different initial conditions from the PD control. The CO2 concentration is increased by 1 % yr-1 for the first 140 years to quadruple the concentration (1468 ppm). It is then decreased symmetrically for another 140 years, so that the concentration recovers to its original level (367 ppm). Finally, we integrated an additional 220 years with the original CO2 level. Note that this experimental design is quite similar to the protocol of the Carbon Dioxide Removal Model Intercomparison Project (or CDRMIP; Keller et al., 2018), except for the initially set CO2 level.
DOI: 10.6084/m9.figshare.25676361.v1
title: Overwintering wood frog 2019-2020

description: Among terrestrial ectotherms, hibernation is a common response to extreme cold temperatures and is associated with reduced physiological rates, including immunity. When winter wanes and temperatures increase, so too do vital rates of both ectothermic hosts and their parasites. Due to metabolic scaling, if parasite activity springs back faster than host immune functions then cold seasons and transitions between cold and warm seasons may represent periods of vulnerability for ectothermic hosts. Understanding host regulation of physiological rates at seasonal junctions is a first step toward identifying thermal mismatches between hosts and parasites. Here we show that immune gene expression is responsive to transitions into and out of the cold season in a winter-adapted amphibian, the wood frog (<i>Lithobates sylvaticus</i>), and that frogs experienced parasitism by at least two nematode species throughout the entirety of the cold season. In both splenic and skin tissues, we observed a decrease in immune gene expression going from fall to winter, observed no changes between winter and emergence from hibernation, and observed increases in immune gene expression after hibernation ended. At all timepoints, differentially expressed genes from spleens were more highly enriched for immune system processes than those from ventral skin, especially with respect to terms related to adaptive immune processes. Infection with nematode lungworms was also associated with upregulation of immune processes in the spleen. We suggest that rather than being a period of stagnation, during which physiological processes and infection potential cease, the cold season is immunologically dynamic, requiring coordinated regulation of many biological processes, and that the reemergence period may be an important time during which hosts invest in preparatory immunity.
DOI: 10.17632/jf43t395zs
title: Survey on Vietnamese Student's Academic Perfectionism

description: "Student's Academic Perfectionsim" is a dataset capturing the academic perfectionism of  upper secondary Vietnamese students. This dataset gathered 2930 observations from February to March, 2020. Specifically, this dataset emphasizes five aspects: (i) The demographic information of  students; (ii) The level of students’ perfectionism; (iii) Student's  believe in school meritocracy; (iv) Student's competitiveness among students and (v) Their intrinsic motivation towards the achievement.
DOI: 10.17632/khsnjy2hn2
title: Dataset on Teachers' Perspectives on the Application of Technology in Teaching Mathematics in Primary Schools

description: This dataset provides insights into the use of technology in teaching mathematics at the primary school level, as evaluated by 11,811 primary school teachers across 11 provinces in Vietnam. The dataset examines four key aspects from teachers’ perspectives: (1) Teachers' views on technology in mathematics education, including AR applications; (2) Teaching conditions related to technology integration; (3) Practical implementation of technology in primary school mathematics classrooms, including pedagogical and technological practices; (4) Teachers' self-assessment of the effectiveness of technology integration and challenges encountered in technology-enhanced mathematics teaching. The survey was conducted online via Google Forms from October to December 2023. The dataset aims to provide valuable insights for educational administrators and researchers to understand the status of technology use in mathematics education and STEM education in general.
DOI: 10.6084/m9.figshare.19725932.v3
title: Supplementary tables from Association mapping of colour variation in a butterfly provides evidence that a supergene locks together a cluster of adaptive loci

description: Table S1: List of samples and sequencing statistic. Table S2: List of most association regions and variants. We defined here a region of association as a 10 kb region displaying a clear peak of association (several SNP with p &lt; 10-7). The choice of region size is arbitrary and a finer or larger region size can alter the results. Regions associated with wing-pattern variation in both Hn123 and Hn0 allelic classes are highlighted in yellow. Summary the fitness parameter used in simulations.
DOI: 10.6084/m9.figshare.25035905.v1
title: Supra-second tracking and live cell karyotyping reveal principles of mitotic chromosome dynamics

description: 3D time lapse of H2B-tagged mitotic chromosomes. Contains raw data (*_raw.tif) and the corresponding segmentation masks (*_masks.tif) for each time point, imaged every 8 seconds. 
The cells come from 3 different cell lines: hTERT-RPE-1 (cells 1, 5-12), U2OS (cell 3), and Hela-Kyoto (cells 2 and 4).
H2B was tagged with: mCherry (cells 2-5, 11, 12) and tdox5StayGold (cells 6-10).
DOI: 10.6084/m9.figshare.4570024.v1
title: Supplementary Material for: Effect of Laparoscopic Antireflux Surgery on Esophageal Motility

description: <b><i>Background/Aims:</i></b> The effect of laparoscopic antireflux surgery on esophageal motility is incompletely understood, and any indication for this procedure in patients with motility disorder is disputed in literature. We evaluated the influence of laparoscopic Nissen fundoplication on impaired esophageal motility. <b><i>Methods:</i></b> In this pathological manometric study, we divided the patients into two groups preoperatively: the hypomotility group (mean amplitude of esophageal contraction wave &lt;40 mm Hg; HYPO group, n = 11) and the normal group (mean amplitude of esophageal contraction wave &gt;40 mm Hg; NORM group, n = 43). The amplitudes of esophageal contraction waves 3 and 8 cm above the lower esophageal sphincter and the percentage of peristaltic contraction waves of the tubular esophagus were analyzed pre- and postoperatively. <b><i>Results:</i></b> In total, 54 patients with GERD underwent esophageal manometry before and 6 months after Nissen fundoplication. The length and pressure of the lower esophageal sphincter were increased in both groups postoperatively (p &lt; 0.01). Patients in the HYPO group (n = 11) showed a statistically significant increase of mean amplitude of esophageal contraction (32.8 vs. 57.3 mm Hg; p &lt; 0.01), while no change was found in the NORM group (n = 43). A total of 72% of patients with preoperative motility disorder showed normal postoperative manometry. <b><i>Conclusion:</i></b> Nissen fundoplication normalizes esophageal motility, especially in patients with preoperative hypomotility. Patients with impaired esophageal motility should not per se be excluded from antireflux surgery.
DOI: 10.6084/m9.figshare.4681225.v1
title: All cps sequences

description: Collection of 3813 cps sequences used in the study, including de novo assembled cps sequences.
DOI: 10.17632/m2cgz8jxkk
title: UV camera supplemental data

description: The objective of this study was to assess whether community interventions including ultraviolet (UV) camera-based self-images could improve sunscreen application in children. The following flow chart describes how participants were separated into each arm of the clinical study, and the steps they undertook to complete the study.
DOI: 10.17632/ztycfyrp28
title: Supplementary Information: Screening of Metallic Single-Replacements for Lead-free Perovskites with Intrinsic Photovoltaic Functionalities

description: Band gaps and Total Density of States for calculated lead-free perovskites
DOI: 10.6084/m9.figshare.21266835.v1
title: Supplement data for Figure 3.docx

description: <strong>Supplement data for figure 3</strong> Student academic performance expressed as the mean± SD examination marks for the mid-term and final examinations.
DOI: 10.6084/m9.figshare.24534261.v1
title: R script for statistical analysis from Microbiome and photoperiod interactively determine thermal sensitivity of polar and temperate diatoms

description: R script to reproduce the statistical analysis. Requires the dataset “plateassay_growthrates.csv” as input.
DOI: 10.6084/m9.figshare.24994742.v1
title: Geodiversity in the Amazon Drainage Basin

description: This dataset contains all maps used in the analysis of geodiversity in the Amazon drainage basin, for the article "Geodiversity in the Amazon Drainage Basin" published in Philosophical Transactions A (https://doi.org/10.1098/rsta.2023.0065). The database consists of the following:A map of the geodiversity index A map of the geological diversity index and it's source dataA map of the geomorphological diversity index and it's source dataA map of the hydrological diversity indexA map of the main rivers and river colours in the Amazon drainage basinA map of the soil diversity index and it's source dataA map with the major sedimentary basins, the Andean orogeny and cratons in the Amazon drainage basinA map with the areas and locations mentioned in the literature reviewAll the geodiversity and geodiversity component index maps were retrieved from an open access global geodiversity dataset by Polman et al. (https://doi.org/10.21942/uva.23496923). The base layers were also retrieved from open access databases:The lithological base layer was retrieved from Hartmann and Moosdorf (2012), http://doi.wiley.com/10.1029/2012GC004370The geomorphological base layer was based of a DEM created by Yamazaki et al. (2017), http://doi.wiley.com/10.1002/2017GL072874The river water colour map was retrieved from Venticinque et al (2016), doi: 10.5194/essd-8-651-2016The soil diversity map was retrieved from Hengl et al. (2017), doi: 10.1371/journal.pone.0169748Metadata of how maps were produced is supplied per map, layer and feature set in the database. There, you'll find references to additional works that were used to draw the extent of sedimentary basins, structural arches, cratons, and catchments as portrayed in the maps.
DOI: 10.6084/m9.figshare.9116732.v2
title: Project SCORE processed with CERES

description: This dataset is the result of 318 cancer cell lines screened with the genome-wide KY1.0/1.1 CRISPR KO library by the Sanger Institute, processed with the Achilles pipeline (except QC). The publication describing the experiment is "Prioritization of cancer therapeutic targets using CRISPR-Cas9 screens," DOI 10.1038/s41586-019-1103-9.<br>Readcounts were downloaded from https://score.depmap.sanger.ac.uk/downloads on 8 May 2019. Only cell lines annotated by the authors as passing both QC steps in Supplementary Table 1 were retained. Additionally, only cell lines for which the Broad has copy number data as of 10 May 2019 were retained.<br>For more details on included files, see README
DOI: 10.6084/m9.figshare.9784388.v1
title: China provincial CO2 emission inventory (reference approach), 2016-2017

description: The dataset provides China provincial CO2 emission inventory (reference approach) from 2016-2017.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.17632/68jkk7brmn
title: Data for: New simulants for martian regolith: controlling iron variability.

description: Associated raw data for OUXX-X simulants and component materials.
DOI: 10.17632/cx28dr9t22
title: Sandoz, P._etal_2022_MassSpecDataSource

description: Trimerization and higher order assembly of CLIMP-63
The Data_Source file supports findings regarding the identification of Endoplasmic Reticulum luminal CLIMP-63 trimers published in Sandoz. P, et al 2022 - Model-driven understanding of CLIMP-63 structure and S-acylation reveals fine tuning of ER morphology. 
Excel file includes all RAW values and correspondent normalized data points used for the LC-chromatograms and MS-spectrum depicted in Fig 4 and S4.
In addition, the output data and complete list of identified peptides for the shotgun proteomic analysis in S4d is also included
A legend with the description of all the individual data sets is included in the file.
Correspondent RAW data files are included
DOI: 10.17632/kbb4pwmg5g
title: Seahorse-assessed metabolic data for rabbit adipose-derived stem cells and rabbit Achilles tenocytes treated with Insulin-Like Growth Factor-1 (IGF-1), with Platelet-Derived Growth Factor-BB (PDGF-BB), or with both growth factors simultaneously

description: We present data assessed in the Seahorse assay, where either IGF-1 was supplemented to the culture medium, PDGF-BB, or IGF-1 and PDGF-BB (mixed group) for two cell types; i.e. New Zealand white rabbit adipose-tissue derived stem cells and New Zealand white rabbit Achilles tenocytes, respectively. The data sets include glycolysis and mitochondrial ATP production rates, oxygen consumption rates (OCR in pmol/min/cells), extracellular acidification rates (ECAR in mpH/min/cells), basal respiration rates and maximum respiration rates.
DOI: 10.6084/m9.figshare.19719499.v1
title: MIMA study - Venetoclax

description: images of multiplex IHC staining of MMTV-PyMT mammary carcinoma tissue three days after local Venetoclax drug delivery
DOI: 10.6084/m9.figshare.24551989.v2
title: NEST - DFAB Energy Demand and User Practice Data

description: Measurement data for the DFAB building at NEST. The dataset consists of 42 measurement points with a temporal resolution of 1 minute. The data has been recorded over the duration of one year (July 2019 to July 2023). Metadata for each measurement point is stored in a separate file on this repository.
DOI: 10.6084/m9.figshare.28342568.v1
title: Non-Homogeneous Distribution of Inhibitory Inputs Among Motor Units in Response to Nociceptive Stimulation

description: This repository contains all the raw electromyographic (EMG) data and the edited motor unit spike trains. These data are associated with the following article (link).<b>Contact</b>: François Hug (francois.hug@univ-cotedazur.fr)For additional details, please refer to the README file.<b>Abstract: </b>Pain significantly influences movement, yet the neural mechanisms underlying the range of observed motor adaptations remain unclear. This study combined experimental data and in silico models to investigate the contribution of inhibitory and neuromodulatory inputs to motor unit behaviour in response to nociceptive stimulation during contractions at 30% of maximal torque. Specifically, we aimed to unravel the distribution pattern of inhibitory inputs to the motor unit pool. Seventeen participants performed isometric knee extension tasks under three conditions: Control, Pain (induced by injecting hypertonic saline into the infra-patellar fat pad), and Washout. We identified large samples of motor units in the vastus lateralis (up to 53/participant) from high-density electromyographic signals, leading to three key observations. First, while motor unit discharge rates significantly decreased during Pain, a substantial proportion of motor units (14.8-24.8%) did not show this decrease and, in some cases, even exhibited an increase. Second, using complementary approaches, we found that pain did not significantly affect neuromodulation, making it unlikely to be a major contributor to the observed changes in motor unit behaviour. Third, we observed a significant reduction in the proportion of common inputs to motor units during Pain. To explore potential neurophysiological mechanisms underlying these results, we simulated the behaviour of motor unit pools with varying distribution patterns of inhibitory inputs. Our simulations support the hypothesis that a non-homogeneous distribution of inhibitory inputs, not strictly organised according to motor unit size, is a key mechanism underlying the motor response to nociceptive stimulation.
DOI: 10.6084/m9.figshare.11898027.v1
title: Supplementary Table S1 from Role of the intestinal microbiome in low-density polyethylene degradation by caterpillar larvae of the greater wax moth, <i>Galleria mellonella</i>

description: Pairwise comparisons of relative bacterial genera abundance of Galleria mellonella starved (S), honeycomb-fed (HF), and platic-fed (PF) treatments at 24 h and 72 h.
DOI: 10.6084/m9.figshare.21175129.v13
title: Chimpanzees and bonobos reinstate an interrupted triadic game

description: When humans engage in joint action, they do so with an underlying sense of joint commitment, a feeling of mutual obligation towards their partner and a shared goal. Whether our closest living relatives, the great apes, experience and understand joint actions in the same way is subject to debate. Crucial evidence concerns how participants respond to interruptions of joint actions, particularly if they protest or attempt to reengage their reluctant or distracted partners. During dyadic interactions, great apes appear to have some sense of joint commitment, according to recent studies. Yet data are inconsistent for triadic games with objects. We addressed this issue by engaging <em>N</em>=23 apes (5 adult chimpanzees, 5 infant bonobos, 13 adult bonobos) in a “tug-of-war” game with a human experimenter who abruptly stopped playing. Adult apes readily attempted to reengage the experimenter, with no species differences. Older bonobos exhibited more reengagement attempts, including more game-related behaviours, than younger bonobos, which might explain negative results of earlier research. Great apes may thus have motivational foundations for joint commitment experienced by humans, although this capacity might develop only later in life. We discuss this finding in relation to evolutionary and developmental theories on joint commitment.
DOI: 10.6084/m9.figshare.22691413.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.21895941.v2
title: IJGIS_MNCDKE_Code_Data

description: The data and codes for the paper <i>MNCD-KE: A novel framework for simultaneous attribute- and interaction-based geographical regionalization</i>.