cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/103141
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC459-03 using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.26180/5c04764a4418b
title: participant 8 EEG.zip

description: Participant 8, day 1 and 2 EEG data
DOI: 10.7284/103140
title: Singlebeam Echosounder data collected during research cruise OC459-03 using a Knudsen 320B/R instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103142
title: Multiplexed data collected during research cruise OC460 using a WHOI Calliope instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103145
title: Multiplexed data collected during research cruise OC460 using a WHOI Athena instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7367132.v3
title: Mika Agnieszka_zadanie z wykładu_18.11.2018 r.

description: company values<br>
DOI: 10.6084/m9.figshare.7367078
title: Aridity and land use negatively influence a dominant species’ upper critical thermal limits. Dataset for PeerJ paper

description: Dataset used for midel fitting using lme4 to perform a linear mixed effects analysis of the relationship between CT<sub>max</sub> as a response variable against the environmental variables of aridity, LUI (converted to a proportion), soil clay content, exotic plant ground cover, and total native woody cover (Canopy) designated as fixed effects.
DOI: 10.7284/103144
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC460 using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111507
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC460 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103143
title: Singlebeam Echosounder data collected during research cruise OC460 using a Knudsen 320B/R instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103147
title: Multiplexed data collected during research cruise OC461 using a WHOI Calliope instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7366946
title: ind-diff-regression.csv

description: This is the final, fully processed dataset from Patel & Varma (2018) : How the Abstract Becomes Concrete: Irrational Numbers are Understood Relative to Natural Numbers and Perfect Squares
DOI: 10.6084/m9.figshare.7366961
title: Patel & Varma (2018) figures

description: This set of figures is from Patel & Varma (2018). The article describes the results from a lab study in which university students completed a battery of mathematical tasks including magnitude comparison, number line estimation, and an arithmetic assessment.
DOI: 10.6084/m9.figshare.7366961.v1
title: Patel & Varma (2018) figures

description: This set of figures is from Patel & Varma (2018). The article describes the results from a lab study in which university students completed a battery of mathematical tasks including magnitude comparison, number line estimation, and an arithmetic assessment.
DOI: 10.7284/103150
title: Multiplexed data collected during research cruise OC461 using a WHOI Athena instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7366946.v1
title: ind-diff-regression.csv

description: This is the final, fully processed dataset from Patel & Varma (2018) : How the Abstract Becomes Concrete: Irrational Numbers are Understood Relative to Natural Numbers and Perfect Squares
DOI: 10.6084/m9.figshare.7366877
title: Heeringa_2018_EJN_data

description: ABRs before and after acoustic trauma (11 kHz, 1hr, bilateral, 124 dB SPL). temporal and rate modulation transfer functions recorded from the inferior colliculus of the guinea pig before and after acoustic trauma using multichannel electrodes.
DOI: 10.7284/103149
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC461 using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7366853
title: Origin-Destination Matrix of Travel Times in the US

description: These a zipped files containing a matrix of origin to destination travel times, at the Census tract level, for the United States.<br>The origins and destinations are the 2010 Census Tracts. All pairs of tracts within 100 km of each other are included.<br>The (unzipped) file format is a csv with three columns: origin and destination (tracts), and the travel travel time in minutes.<br>The time.csv contains driving times and the otp.csv file contains information travel times on public transportation in 40 large cities in the US, calculated using the OpenTripPlanner software.<br>An interactive version of these data can be found at the link below.
DOI: 10.6084/m9.figshare.7366877.v1
title: Heeringa_2018_EJN_data

description: ABRs before and after acoustic trauma (11 kHz, 1hr, bilateral, 124 dB SPL). temporal and rate modulation transfer functions recorded from the inferior colliculus of the guinea pig before and after acoustic trauma using multichannel electrodes.
DOI: 10.6084/m9.figshare.7366850
title: Roger Creel sea level change files for Research Computing Final Project 11_20_2018

description: ICE6G_VM5.nc: dataset containing sea level predictions from ICE6G run through Jacky Austermann's GIA code. These predictions have Antarctica set to zero, so contain all Northern hemisphere ice for 26000 years to present in thousand year intervals between 26 and 21 kyr and five hundred year intervals between 21 kyr and present.<br>Jonny_mod_111918_slvars.nc: dataset containing sea level predictions from Jonny Kingslake's 35 kyr - present Antarctica ice sheet model.Model runs in 100 year time increments.
DOI: 10.6084/m9.figshare.7366853.v1
title: times.csv.bz2

description: These a zipped files containing a matrix of origin to destination travel times, at the Census tract level, for the United States.<br>The origins and destinations are the 2010 Census Tracts. All pairs of tracts within 100 km of each other are included.<br>The (unzipped) file format is a csv with three columns: origin and destination (tracts), and the travel travel time in minutes.<br>The time.csv contains driving times and the otp.csv file contains information travel times on public transportation in 40 large cities in the US, calculated using the OpenTripPlanner software.<br>An interactive version of these data can be found at the link below.
DOI: 10.7284/111509
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC461 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7365629
title: De Novo OTU taxonomy file

description: Taxonomy for De Novo OTUs generated in this study.
DOI: 10.6084/m9.figshare.7366850.v1
title: ice6g_VM5.nc

description: ICE6G_VM5.nc: dataset containing sea level predictions from ICE6G run through Jacky Austermann's GIA code. These predictions have Antarctica set to zero, so contain all Northern hemisphere ice for 26000 years to present in thousand year intervals between 26 and 21 ka and five hundred year intervals between 21 ka and present.<br>Jonny_mod_111918_slvars.nc: dataset containing sea level predictions from Jonny Kingslake 35 kyr - present antarctica ice sheet model. Model runs in 100 year time increments.
DOI: 10.7284/103148
title: Singlebeam Echosounder data collected during research cruise OC461 using a Knudsen 320B/R instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7365467
title: Vampire Bat Microbiome Metadata

description: Metadata, including immune assays, sex, mass, and diet isotope data for Vampire bats whose microbiomes were sequenced in this study.
DOI: 10.6084/m9.figshare.7365467.v1
title: Vampire Bat Microbiome Metadata

description: Metadata, including immune assays, sex, mass, and diet isotope data for Vampire bats whose microbiomes were sequenced in this study.
DOI: 10.7284/103152
title: Multiplexed data collected during research cruise OC462 using a WHOI Calliope instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7365266
title: De Novo OTU phylogeny

description: OTU phylogeny generated in Mothur analysis
DOI: 10.6084/m9.figshare.7365629.v1
title: De Novo OTU taxonomy file

description: Taxonomy for De Novo OTUs generated in this study.
DOI: 10.6084/m9.figshare.7365080
title: DeNovo OTU Table, Phylogeny, Taxonomy Table, and Metadata

description: De Novo OTU table from Mothur analysis
DOI: 10.6084/m9.figshare.7365266.v1
title: De Novo OTU phylogeny

description: OTU phylogeny generated in Mothur analysis
DOI: 10.7284/109885
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC462 using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7365080.v1
title: DeNovo OTU Table

description: De Novo OTU table from Mothur analysis
DOI: 10.6084/m9.figshare.7365080.v2
title: DeNovo OTU Table, Phylogeny, Taxonomy Table, and Metadata

description: De Novo OTU table from Mothur analysis
DOI: 10.7284/111511
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC462 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17028/rd.lboro.7365020
title: Calibration test data for a robot mounted laser scanner

description: This data set contains line scan data acquired from a micro epsilon laser scanner, under default settings, that is mounted to an industrial robot arm. The robot is a Fanuc LR Mate 200 iC industrial robot arm, driven by a R-30/iA Mate controller. The scanner is a Micro Epsilon 3D profile sensor (sensor model: Epsilon scan control 2900-50). <br>To acquire the data the laser scanner is positioned relative to a flat target plate, and laser scans are collected by using the robot to position the laser scanner at a range of poses relative to the plate. The data set also includes a definition of the pose of the robot tool center point. The data can be used to investigate strategies for robot hand-eye calibration of laser scanners using only data collected from flat target surfaces.<br><br>
DOI: 10.6084/m9.figshare.7365008
title: Bovine mammary microbiome

description: amplicon sequencing data and associated metadata of bovine milk and teat from mastitic and infected quarters
DOI: 10.7284/103153
title: Singlebeam Echosounder data collected during research cruise OC462 using a Knudsen 320B/R instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103156
title: Multiplexed data collected during research cruise OC463 using a WHOI Calliope instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17028/rd.lboro.7365020.v1
title: Calibration test data for a robot mounted laser scanner

description: This data set contains line scan data acquired from a micro epsilon laser scanner, under default settings, that is mounted to an industrial robot arm. The robot is a Fanuc LR Mate 200 iC industrial robot arm, driven by a R-30/iA Mate controller. The scanner is a Micro Epsilon 3D profile sensor (sensor model: Epsilon scan control 2900-50). <br>To acquire the data the laser scanner is positioned relative to a flat target plate, and laser scans are collected by using the robot to position the laser scanner at a range of poses relative to the plate. The data set also includes a definition of the pose of the robot tool center point. The data can be used to investigate strategies for robot hand-eye calibration of laser scanners using only data collected from flat target surfaces.<br><br>
DOI: 10.6084/m9.figshare.7365005
title: Annotated eye transcriptomes and phototransduction gene alignments associated with, "Pinto et al. 2019. Transcriptomic analysis reveals the loss of visual opsin genes during a nocturnal bottleneck in the ancestor of all geckos. Molecular Phylogenetics and Evolution."

description: See README file.
DOI: 10.6084/m9.figshare.7364996
title: WikiConv (Greek Wikipedia)

description: WikiConv is corpus encompassing the full history of conversations on Wikipedia.<br>This corpus contains all conversations on Greek Wikipedia talk pages until 2018.7.1.<br>The dataset and reconstruction process for this corpus has been published in the paper <i>WikiConv: A Corpus of the Complete Conversational History of a Large Online Collaborative Community</i>, presented at EMNLP 2018.<br>The work has also been presented at the June 2018 Wikipedia reasearch showcase (the first half describes our work, using an earlier version of this dataset to predict conversations going awry).<br>You can find the code base and the detailed description of the data format on github.
DOI: 10.6084/m9.figshare.7364996.v1
title: WikiConv (Greek)

description: WikiConv is corpus encompassing the full history of conversations on Wikipedia.<br>The dataset and reconstruction process for this corpus has been published in the paper WikiConv: A Corpus of the Complete Conversational History of a Large Online Collaborative Community, presented at EMNLP 2018.<br>The work has also been presented at the June 2018 Wikipedia reasearch showcase (the first half describes our work, using an earlier version of this dataset to predict conversations going awry.
DOI: 10.6084/m9.figshare.7365005.v1
title: Annotated eye transcriptomes and phototransduction gene alignments associated with, "Pinto et al. 2019. Transcriptomic analysis reveals the loss of visual opsin genes during a nocturnal bottleneck in the ancestor of all geckos. Molecular Phylogenetics and Evolution."

description: See README file.
DOI: 10.7284/103158
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC463 using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7364942
title: Generation of transgene-free porcine intermediate type induced pluripotent stem cells

description: Physiologically and anatomically, humans and pigs share many similarities, which make porcine induced pluripotent stem cells (piPSCs) very attractive for modeling human cell therapy as well as for testing safety of iPSC based cell replacement therapies. To date, several integrative and non-integrative strategies have been reported to successfully generate piPSCs, but all resulting piPSCs had integration of transgenes. The use of integrative methods has the disadvantage of potential lack of silencing or inappropriate re-activation of these genes during differentiation, as well as uncertainty regarding disruption of important genomic regions caused by integration. In our study, we performed a non-integrative vector based reprogramming approach using porcine fetal fibroblasts. The resulting four piPSC lines were positive for pluripotency marker and when subjected to in vitro and in vivo differentiation assays, all four lines formed embryoid bodies, capable to differentiate into all three germ layers, and three out of the four cell lines formed teratomas. PCR analysis on genomic and plasmid DNA revealed that the episomal vectors were undetectable in six out of eight subclones derived from one of the piPSC lines (piPSC1) above passage 20. These piPSCs could potentially be ideal cell lines for the generation of porcine in vitro and in vivo models. Furthermore, subsequent analyses of our new transgene independent piPSCs could provide novel insights on the genetic and epigenetic necessities to achieve and maintain piPSCs.
DOI: 10.7284/103157
title: Singlebeam Echosounder data collected during research cruise OC463 using a Knudsen 320B/R instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7364942.v1
title: Generation of transgene-free porcine intermediate type induced pluripotent stem cells

description: Physiologically and anatomically, humans and pigs share many similarities, which make porcine induced pluripotent stem cells (piPSCs) very attractive for modeling human cell therapy as well as for testing safety of iPSC based cell replacement therapies. To date, several integrative and non-integrative strategies have been reported to successfully generate piPSCs, but all resulting piPSCs had integration of transgenes. The use of integrative methods has the disadvantage of potential lack of silencing or inappropriate re-activation of these genes during differentiation, as well as uncertainty regarding disruption of important genomic regions caused by integration. In our study, we performed a non-integrative vector based reprogramming approach using porcine fetal fibroblasts. The resulting four piPSC lines were positive for pluripotency marker and when subjected to in vitro and in vivo differentiation assays, all four lines formed embryoid bodies, capable to differentiate into all three germ layers, and three out of the four cell lines formed teratomas. PCR analysis on genomic and plasmid DNA revealed that the episomal vectors were undetectable in six out of eight subclones derived from one of the piPSC lines (piPSC1) above passage 20. These piPSCs could potentially be ideal cell lines for the generation of porcine in vitro and in vivo models. Furthermore, subsequent analyses of our new transgene independent piPSCs could provide novel insights on the genetic and epigenetic necessities to achieve and maintain piPSCs.
DOI: 10.7284/103160
title: Multiplexed data collected during research cruise OC464 using a WHOI Calliope instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103162
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC464 using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111515
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC464 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103161
title: Singlebeam Echosounder data collected during research cruise OC464 using a Knudsen 320B/R instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7364810
title: AFM_RawData_Seeger

description: Included are raw data files for all AFM and optical fluorescence images. AFM images have been converted to .png files using the open access software, Gwyddion, for the following channels: Height, Peak Force Error and Stiffness (DMT Modulus).<br>All experiments were conducted using a ScanAsyst-Fluid cantilever, with a nominal spring constant of 0.7 N/m.
DOI: 10.7284/103164
title: Multiplexed data collected during research cruise OC465 using a WHOI Calliope instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7364810.v1
title: AFM_RawData_Seeger

description: Included are raw data files for all AFM and optical fluorescence images. AFM images have been converted to .png files using the open access software, Gwyddion, for the following channels: Height, Peak Force Error and Stiffness (DMT Modulus).<br>All experiments were conducted using a ScanAsyst-Fluid cantilever, with a nominal spring constant of 0.7 N/m.
DOI: 10.7284/103165
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC465 using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111517
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC465 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7364738
title: Supplementary sequence files

description: Supplementary files for manuscript:<br>The reported point centromeres of Scheffersomyces stipitis are retrotransposon LTRs<br>by Aisling Y. Coughlan and Kenneth H. Wolfe<br>
DOI: 10.7284/103167
title: Multiplexed data collected during research cruise OC466 using a WHOI Calliope instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7364576
title: Data: Surveillance Anxiety Survey 1

description: These data are the results of a survey designed to capture affective responses to the introduction of surveillance to festival environments. Festivals were chosen as a natural field lab for studying the affective relationship between citizens and surveillance. In referring to the festival as a natural field lab, we point to the real-world and authentic nature of the festival setting and the lack of control over variables that alter the festival experience. Participants were recruited via social media venues (e.g., Twitter, Facebook (Burning Man site), Reddit and SubReddit, efestivals [Glastonbury, General Discussion), university undergraduate and postgraduate students (Roehampton, Manchester), listservs (Digital Geography Research Group, Critical Geography, Digital Geography Specialty Group USA), and professional organizations (Royal Geographical Society/Institute of British Geographers).<br>We advertised the survey in two bouts: one without and with a request for the location participants attended the festival. The inclusion of location data in Wave 2 does not alter the data generated for the research question but does allow a subsample to compare country-based experiences, which might exist due to differing security norms. We expect no differences due to security norms because attendees are already familiar with their own security measures (e.g., the US is used to armed security in public spaces) and changes in surveillance or security presence will be relative to normal experience.
DOI: 10.7284/103168
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC466 using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111519
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC466 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition