cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25556157.v1
title: An LLM-based module to assist in choosing objective functions for search-based PLA design

description: This work delves into the complex domain of Product Line Architecture (PLA) optimization, a critical area in Software Engineering (SE) focused on enhancing the design and functionality of software product lines through variability management and reuse. A particular challenge in this area is the selection of optimal objective functions, a core aspect of interactive Search-Based Software Engineering (SBSE) that significantly influences the success of search-based PLA design. Despite its importance, this task remains daunting due to the vast design space and the critical impact of chosen objectives on the optimization outcome. Language Learning Models (LLMs), particularly the Generative Pre-trained Transformer series (GPT), have shown promising results to help in various SE tasks. This paper explores the integration of such LLMs, notably ChatGPT, into the search-based PLA design. By leveraging LLMs' capacity to understand and generate human-like text, we investigate their potential to assist decision-makers (DMs) by proposing a module of suggestions of objective functions, thereby simplifying and improving decision-making in PLA design optimization. Through empirical tests combined with qualitative feedback from domain experts, this research highlights the application of LLMs in SE and maps out the challenges and opportunities that lie ahead in fully harnessing their potential for PLA search-based design. Exploratory testing and expert feedback confirm ChatGPT's potential in suggesting objective functions for search-based PLA design.
DOI: 10.5517/ccdc.csd.cc2jttnv
title: CCDC 2348518: Experimental Crystal Structure Determination

description: Related Article: Sung Kwang Lee|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jwbkb
title: CCDC 2349972: Experimental Crystal Structure Determination

description: Related Article: Gavin Chit Tsui|2024|CSD Communication|||
description: Related Article: Yanhui Wang, Gavin Chit Tsui|2024|Org.Lett.|26|5822|doi:10.1021/acs.orglett.4c02112
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jwqy3
title: CCDC 2350356: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jwrx3
title: CCDC 2350386: Experimental Crystal Structure Determination

description: Related Article: Dehang Yin|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jx8rh
title: CCDC 2350877: Experimental Crystal Structure Determination

description: Related Article: Merzweiler, Kurt|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jx9qh
title: CCDC 2350907: Experimental Crystal Structure Determination

description: Related Article: Mohammed A. A. Alshajajir, Lee J. Higham, Paul G. Waddell|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.rg2rh3
title: Occurrence Download

description: A dataset containing 185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mozambique",
 "TaxonKey is one of (Bobgunnia madagascariensis (Desv.) J.H.Kirkbr. & Wiersema, Hymenaea verrucosa Gaertn., Ochna mossambicensis Klotzsch)"
 ]
}

 The dataset includes 185 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064033-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cufq7v
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nomia westwoodi Gribodo, 1894"
 ]
}

 The dataset includes 223 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064034-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8f5pk
title: Occurrence Download

description: A dataset containing 33786 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "Geometry POLYGON((-75.06215 6.45197,-75.09507 6.43255,-75.09592 6.39119,-75.08072 6.3625,-75.06047 6.33042,-75.04358 6.29413,-75.00645 6.27641,-74.98619 6.23842,-74.95496 6.21057,-74.92373 6.18525,-74.87478 6.16668,-74.82498 6.16246,-74.787 6.1709,-74.78278 6.21901,-74.80388 6.25699,-74.84692 6.28907,-74.88913 6.34984,-74.93892 6.39035,-75.00645 6.44775,-75.06215 6.45197))",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 33786 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064032-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26553269.v1
title: Additional file 3 of The mutational dynamics of short tandem repeats in large, multigenerational families

description: Additional file 3.
DOI: 10.48597/hx56-kxca
title: Particle_number_size_distribution at Barcelona (Palau Reial)

description: Measurement of Particle_number_size_distribution at Barcelona (Palau Reial)
DOI: 10.15468/dl.q9vdvu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.567132 -33.662813, 148.567132 -33.665059, 148.571624 -33.665059, 148.571624 -33.662813, 148.567132 -33.662813))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064035-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26557346
title: Additional file 3 of RNA N6-methyladenosine modification mediates downregulation of NR4A1 to facilitate malignancy of cervical cancer

description: Additional file 3. Table S3. Characteristics of specimens.
DOI: 10.6084/m9.figshare.26557349.v1
title: Additional file 4 of RNA N6-methyladenosine modification mediates downregulation of NR4A1 to facilitate malignancy of cervical cancer

description: Additional file 4. Table S1. The primers used in this study.
DOI: 10.6084/m9.figshare.26554943.v1
title: Additional file 8 of Patterns of abundance, chromosomal localization, and domain organization among c-di-GMP-metabolizing genes revealed by comparative genomics of five alphaproteobacterial orders

description: Additional file 8: Table S7. Frequency of association of all secondary domains that co-occur with c-di-GMP-associated domains.
DOI: 10.6084/m9.figshare.26553434
title: Additional file 10 of WATLAS: high-throughput and real-time tracking of many small birds in the Dutch Wadden Sea

description: Additional file 10. Data file with localizations to calculate cumulative distances and map the tracks for the nine red knots as shown in Fig. 7. TAG represents Individual tag identity, TIME is UNIX time (s), X is the X-coordinate of localizations (m, UTM 31N), Y is the Y-coordinate of localizations (m, UTM 31N), NBS is the number of base stations used to calculate localizations, VARX is the Variance in X coordinates, VARY is the Variance in Y coordinates, COVXY is the Covariance between X and Y coordinates, and ts is the timestamp (CET).
DOI: 10.6084/m9.figshare.26553434.v1
title: Additional file 10 of WATLAS: high-throughput and real-time tracking of many small birds in the Dutch Wadden Sea

description: Additional file 10. Data file with localizations to calculate cumulative distances and map the tracks for the nine red knots as shown in Fig. 7. TAG represents Individual tag identity, TIME is UNIX time (s), X is the X-coordinate of localizations (m, UTM 31N), Y is the Y-coordinate of localizations (m, UTM 31N), NBS is the number of base stations used to calculate localizations, VARX is the Variance in X coordinates, VARY is the Variance in Y coordinates, COVXY is the Covariance between X and Y coordinates, and ts is the timestamp (CET).
DOI: 10.6084/m9.figshare.26554925.v1
title: Additional file 2 of Patterns of abundance, chromosomal localization, and domain organization among c-di-GMP-metabolizing genes revealed by comparative genomics of five alphaproteobacterial orders

description: Additional file 2: Table S1. R packages used for analyses.
DOI: 10.6084/m9.figshare.26553272.v1
title: Additional file 4 of The mutational dynamics of short tandem repeats in large, multigenerational families

description: Additional file 4.
DOI: 10.6084/m9.figshare.26557409
title: Additional file 9 of Staphylococcus aureus populations from the gut and the blood are not distinguished by virulence traits—a critical role of host barrier integrity

description: Additional file 9.
DOI: 10.6084/m9.figshare.26553266.v1
title: Additional file 2 of The mutational dynamics of short tandem repeats in large, multigenerational families

description: Additional file 2.
DOI: 10.6084/m9.figshare.26554772.v1
title: Additional file 1 of The effect of posture on airflow distribution, airway geometry and air velocity in healthy subjects

description: Additional file 1. All collected raw data are presented in the additional file.
DOI: 10.6084/m9.figshare.26553443
title: Additional file 13 of WATLAS: high-throughput and real-time tracking of many small birds in the Dutch Wadden Sea

description: Additional file 13. Data file with localizations to calculate home ranges for sanderling as shown in Fig. 9A. TAG represents Individual tag identity, TIME is UNIX time (s), X is the X-coordinate of localizations (m, UTM 31N), Y is the Y-coordinate of localizations (m, UTM 31N), NBS is the number of base stations used to calculate localizations, VARX is the Variance in X coordinates, VARY is the Variance in Y coordinates, COVXY is the Covariance between X and Y coordinates, ts is the timestamp (CET), tideID is the tidal cycle identity, tidaltime is the time past high tide (minutes), and waterlevel is the waterlevel at west-terschelling (cm).
DOI: 10.6084/m9.figshare.26557406
title: Additional file 8 of Staphylococcus aureus populations from the gut and the blood are not distinguished by virulence traits—a critical role of host barrier integrity

description: Additional file 8.
DOI: 10.6084/m9.figshare.26555138.v1
title: Additional file 1 of Evaluation of a pilot, community-led mental illness de-stigmatization theater intervention in rural Uganda

description: Additional file 1.
DOI: 10.15468/dl.djvdnc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.050598 -33.647093, 148.050598 -33.649338, 148.046107 -33.649338, 148.046107 -33.651584, 148.041615 -33.651584, 148.041615 -33.656076, 148.037124 -33.656076, 148.037124 -33.665059, 148.032632 -33.665059, 148.032632 -33.676288, 148.037124 -33.676288, 148.037124 -33.68078, 148.041615 -33.68078, 148.041615 -33.683025, 148.064073 -33.683025, 148.064073 -33.68078, 148.068565 -33.68078, 148.068565 -33.678534, 148.073056 -33.678534, 148.073056 -33.676288, 148.077548 -33.676288, 148.077548 -33.669551, 148.08204 -33.669551, 148.08204 -33.660567, 148.077548 -33.660567, 148.077548 -33.665059, 148.073056 -33.665059, 148.073056 -33.667305, 148.068565 -33.667305, 148.068565 -33.65383, 148.064073 -33.65383, 148.064073 -33.649338, 148.059582 -33.649338, 148.059582 -33.647093, 148.050598 -33.647093))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064036-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26555129.v1
title: Additional file 2 of Scoping ‘sex’ and ‘gender’ in rehabilitation: (mis)representations and effects

description: Additional file 2.
DOI: 10.6084/m9.figshare.26554871.v1
title: Additional file 1 of Response to commentary article on environmental quality standards for diclofenac derived under the European water framework directive: 1. Aquatic organisms, by Maack et al. 2022

description: Additional file 1. Measured diclofenac concentration in European freshwaters.
DOI: 10.6084/m9.figshare.26555141.v1
title: Additional file 2 of Evaluation of a pilot, community-led mental illness de-stigmatization theater intervention in rural Uganda

description: Additional file 2.
DOI: 10.6084/m9.figshare.26553479
title: Additional file 1 of Genome-wide association study reveals ethnicity-specific SNPs associated with ankylosing spondylitis in the Taiwanese population

description: Additional file 1: Table S1. The 147 SNPs associated with AS
DOI: 10.6084/m9.figshare.26555105.v1
title: Additional file 4 of A novel tRNA-derived fragment tRF-3022b modulates cell apoptosis and M2 macrophage polarization via binding to cytokines in colorectal cancer

description: Additional file 4. Table S7: Gene expression levels in CRC tissues and matching adjacent normal tissues. Table S8: Gene set enrichment analysis (GSEA) of differentially expressed genes in CRC tissues and matching adjacent normal tissues. Table S9: List of 33 differentially expressed tRFs in CRC tissues and matching adjacent normal tissues. Table S10: List of 25 differentially expressed tRFs in plasma exosomes from CRC patients and HCs. Table S11: Gene expression levels of high tRF_group and low tRF_group in tissues. Table S12: Gene set enrichment analysis (GSEA) of differentially expressed genes of high tRF_group and low tRF_group in tissues. Table S13: Gene expression levels of high tRF_group and low tRF_group in plasma exosomes. Table S14: Gene set enrichment analysis (GSEA) of differentially expressed genes of high tRF_group and low tRF_group in plasma exosomes. Table S15: Differentially expressed genes regulated by tRF-3022b-knockdown in HCT116 cells (q-value &lt; 0.05, fold change &gt; 2, or fold change &lt; 0.5). Table S16: KEGG analysis of DEGs in tRF-3022b-knockdown and control cells. Table S17: IPA pathway enrichment analysis of differentially expressed genes in tRF-3022b-knockdown and control cells. Table S18: Band 1 mass spectrometry results. Table S19: Band 2 mass spectrometry results. Table S20: Band 3 mass spectrometry results.
DOI: 10.15468/dl.srhebk
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.679422 -33.676288, 148.679422 -33.678534, 148.681668 -33.678534, 148.681668 -33.68078, 148.683914 -33.68078, 148.683914 -33.678534, 148.688405 -33.678534, 148.688405 -33.671796, 148.683914 -33.671796, 148.683914 -33.676288, 148.679422 -33.676288)), ((148.679422 -33.676288, 148.679422 -33.671796, 148.672685 -33.671796, 148.672685 -33.676288, 148.679422 -33.676288)), ((148.683914 -33.68078, 148.683914 -33.687517, 148.688405 -33.687517, 148.688405 -33.683025, 148.692897 -33.683025, 148.692897 -33.678534, 148.688405 -33.678534, 148.688405 -33.68078, 148.683914 -33.68078)), ((148.679422 -33.671796, 148.681668 -33.671796, 148.681668 -33.669551, 148.679422 -33.669551, 148.679422 -33.671796)))"
 ]
}

 The dataset includes 70 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064037-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13309737
title: embodied creativity
DOI: 10.5281/zenodo.13309738
title: embodied creativity
DOI: 10.6084/m9.figshare.26554931.v1
title: Additional file 4 of Patterns of abundance, chromosomal localization, and domain organization among c-di-GMP-metabolizing genes revealed by comparative genomics of five alphaproteobacterial orders

description: Additional file 4: Table S3. Sequence counts by genera. The mean number of sequences is calculated per genus. Blue indicates a "genus" that is not included in the analysis because it does not represent an actual genus.
DOI: 10.6084/m9.figshare.26568712
title: Additional file 5 of Metagenomics and metabarcoding experimental choices and their impact on microbial community characterization in freshwater recirculating aquaculture systems

description: Additional file 5. Information regarding taxa identified with the PacBio sequencing data.
DOI: 10.15468/dl.brzkef
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((75.354502 21.487155, 75.279028 21.481578, 75.205429 21.464987, 75.135532 21.437794, 75.071071 21.400674, 75.01364 21.354548, 74.96465600000001 21.300559, 74.92532199999999 21.240044, 74.89659899999999 21.174501, 74.879181 21.105548, 74.87348299999999 21.034887, 74.87962899999999 20.964258, 74.897451 20.8954, 74.926495 20.830005, 74.96603500000001 20.769676, 75.01509 20.715894, 75.07245 20.669974, 75.13670500000001 20.63304, 75.206281 20.605995, 75.279476 20.589499, 75.354502 20.583955, 75.429528 20.589499, 75.502723 20.605995, 75.572299 20.63304, 75.636554 20.669974, 75.69391400000001 20.715894, 75.742969 20.769676, 75.782509 20.830005, 75.811553 20.8954, 75.829375 20.964258, 75.835521 21.034887, 75.829823 21.105548, 75.812405 21.174501, 75.783682 21.240044, 75.744348 21.300559, 75.695364 21.354548, 75.637933 21.400674, 75.573472 21.437794, 75.503575 21.464987, 75.429976 21.481578, 75.354502 21.487155))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001746-260108223611665/datasets/export for details.
DOI: 10.15156/bio/sh0182598.10fu
title: SH0182598.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0182599.10fu
title: SH0182599.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0182600.10fu
title: SH0182600.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.