cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.so7ms8
title: Occurrence Download

description: A dataset containing 4467 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clemmys guttata (Schneider, 1792)"
 ]
}

 The dataset includes 4467 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022161-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxaav5
title: Occurrence Download

description: A dataset containing 845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myricaria germanica Qaiser",
 "HasCoordinate is true"
 ]
}

 The dataset includes 845 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040130-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxaahh
title: Occurrence Download

description: A dataset containing 821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mikania F.W.Schmidt, 1795",
 "DatasetKey is The New York Botanical Garden Herbarium (NY)"
 ]
}

 The dataset includes 821 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000146-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ce4rc2
title: Occurrence Download

description: A dataset containing 2536 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Invasive Alien Species Occurrence in Ghana"
 ]
}

 The dataset includes 2536 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130925-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzrdkf
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cuscuta castroviejoi M.A.García"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018966-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jqnx5c
title: Occurrence Download

description: A dataset containing 4599 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 3B) Occurrence and estimated abundance of planktonic foraminifers at DSDP Holes 85-572C and 85-572D"
 ]
}

 The dataset includes 4599 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000146-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wh6dje
title: Occurrence Download

description: A dataset containing 1180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Ecuador",
 "TaxonKey is Zalophus wollebaeki Sivertsen, 1953"
 ]
}

 The dataset includes 1180 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130961-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhzxa3
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema dissectoides W.T.Wang"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187257-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w36kbv
title: Occurrence Download

description: A dataset containing 130059 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventaire National du Patrimoine Naturel : Mammifères de France"
 ]
}

 The dataset includes 130059 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000146-170814131059671/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.snocwo
title: Occurrence Download

description: A dataset containing 89034 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Torminalis glaberrima (Gand.) Sennikov & Kurtto",
 "HasCoordinate is true"
 ]
}

 The dataset includes 89034 records from 338 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027953-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23799879
title: Data from: Microzooplankton grazers induce chain length plasticity in colonial diatoms

description: Data from the paper Ryderheim et al. "<b>Microzooplankton grazers induce chain length plasticity in colonial diatoms</b>"
DOI: 10.6084/m9.figshare.23799879.v1
title: Data from: Responses of colonial diatoms to micrograzer cues

description: Data from the Ryderheim et al. "Responses of colonial diatoms to micrograzer cues"
DOI: 10.6084/m9.figshare.19759721
title: Additional file 1 of Galbase: a comprehensive repository for integrating chicken multi-omics data

description: Additional file 1:
DOI: 10.6084/m9.figshare.25249405
title: Supplementary Material for: Musculoskeletal health worsened from carnitine supplementation and not impacted by a novel individualized treadmill training protocol

description: Introduction: Chronic kidney disease (CKD) negatively affects musculoskeletal health, leading to reduced mobility and quality of life. In healthy populations, carnitine supplementation and aerobic exercise have been reported to improve musculoskeletal health. However, there are inconclusive results regarding their effectiveness and safety in CKD. We hypothesized that carnitine supplementation and individualized treadmill exercise would improve musculoskeletal health in CKD. Methods: We used a spontaneously progressive CKD rat model (Cy/+ rat) (n=11-12/gr): 1) Cy/+ (CKD-Ctrl), 2) CKD-carnitine (CKD-Carn), and 3) CKD-treadmill (CKD-TM). Carnitine (250mg/kg) was injected daily for 10-weeks. Rats in the treadmill group ran 4 days/week on a 5° incline for 10-weeks progressing from 30 min/day for week one to 40 min/day for week two to 50 min/day for the remaining eight weeks. At 32 weeks of age, we assessed overall cardiopulmonary fitness, muscle function, bone histology and architecture, and kidney function. Data was analyzed by one-way ANOVA with Tukey’s multiple comparisons tests. Results: Moderate to severe CKD was confirmed by biochemistries for blood urea nitrogen (mean 43±5 mg/dl CKD-Ctrl), phosphorus (mean 8±1 mg/dl CKD-Ctrl), parathyroid hormone (PTH; mean 625±185 pg/ml CKD-Ctrl), and serum creatinine (mean 1.1±0.2 mg/ml CKD-Ctrl). Carnitine worsened phosphorous (mean 11±3 mg/dl CKD-Carn; p&lt;0.0001), PTH (mean 1738±1233 pg/ml CKD-Carn; p&lt;0.0001), creatinine (mean 1±0.3 mg/dl CKD-Carn; p&lt;0.0001), cortical bone thickness (mean 0.5±0.1 mm CKD-Ctrl, 0.4±0.1 mm CKD-Carn; p&lt;0.05). Treadmill running significantly improve maximal aerobic capacity when compared to CKD-Ctrl (mean 14±2 min CKD-TM, 10±2 min CKD-Ctrl; p&lt;0.01). Conclusion: Carnitine supplementation worsened CKD progression, mineral metabolism biochemistries and cortical porosity, and did not have an impact on physical function. Individualized treadmill running improved maximal aerobic capacity but did not have an impact on CKD progression or bone properties. Future studies should seek to better understand carnitine doses in conditions of compromised renal function to prevent toxicity which may result from elevated carnitine levels and to optimize exercise prescriptions for musculoskeletal health.
DOI: 10.6084/m9.figshare.13467469
title: Additional file 6 of Convergent network effects along the axis of gene expression during prostate cancer progression

description: Additional file 6: Table S5. Proteomics data of 210 PCa samples with duplicates. (a) Sample information includes patient ID, clinical diagnosis, sample ID and batch design. (b) Protein matrix of log2 scaled intensity of 2371 proteins quantified in 210 PCa samples.
DOI: 10.6084/m9.figshare.14516125
title: Additional file 2 of Characteristics of epigenetic aging across gestational and perinatal tissues

description: Additional file 2. Table S2: Mean estimated cell-type proportions (%) and SD in every data set.
DOI: 10.6084/m9.figshare.14516122.v1
title: Additional file 1 of Characteristics of epigenetic aging across gestational and perinatal tissues

description: Additional file 1. Table S1: CpGs from the epigenetic clocks that were not included due to their missingness on the EPIC array.
DOI: 10.6084/m9.figshare.19759739
title: Additional file 3 of Identification of a novel autophagy-related prognostic signature and small molecule drugs for glioblastoma by bioinformatics

description: Additional file 3. The LASSO-regression analysis identified 19 genes with non-zero coefficients.
DOI: 10.6084/m9.figshare.19759724.v1
title: Additional file 2 of Galbase: a comprehensive repository for integrating chicken multi-omics data

description: Additional file 2:
DOI: 10.6084/m9.figshare.13467471.v1
title: Additional file 7 of Convergent network effects along the axis of gene expression during prostate cancer progression

description: Additional file 7: Table S6. Integration analysis of 66 tumor samples. (a) Information (i.e. reference linking them to PCa, consistency between observed and reported effect and number of tumor samples with CNAs) for the first 10 highest-scoring proteins (those with largest average absolute FCs across all tumor specimens). (b) Consistently up-regulated genes in the high-grade tumors: for each of these genes, there is a significant up-regulation of its FCs after network smoothing in the group G4/5 compared to the group G1 in all three layers (CNA, mRNA and protein). (c) Consistently down-regulated genes in the high-grade tumors: for each of these genes, there is a significant down-regulation of its FCs after network smoothing in the group G4/5 compared to the group G1 in all three layers (CNA, mRNA and protein). (d) Chromosome information for the gene members of Network Component 1. (e) Mapping from gene symbols to STRING identifiers.
DOI: 10.18112/openneuro.ds004976.v1.0.0
title: NDUFS4_mouse
DOI: 10.6084/m9.figshare.13468295
title: Additional file 2 of Comparative proteomic analysis reveals novel insights into the interaction between rice and Xanthomonas oryzae pv. oryzae

description: Additional file 2 Xanthomonas oryzae pv. oryzae (Xoo) proteins detected in two genotypes at two time-points after the inoculation with PXO99A.
DOI: 10.6084/m9.figshare.13468299
title: Additional file 4 of Comparative proteomic analysis reveals novel insights into the interaction between rice and Xanthomonas oryzae pv. oryzae

description: Additional file 4. Information regarding all identified proteins.
DOI: 10.6084/m9.figshare.13468293
title: Additional file 1 of Comparative proteomic analysis reveals novel insights into the interaction between rice and Xanthomonas oryzae pv. oryzae

description: Additional file 1. Identified rice proteins in two genotypes at two time-points after the inoculation with PXO99A.
DOI: 10.6084/m9.figshare.13468303.v1
title: Additional file 6 of Comparative proteomic analysis reveals novel insights into the interaction between rice and Xanthomonas oryzae pv. oryzae

description: Additional file 6 Differentially abundant Xanthomonas oryzae pv. oryzae (Xoo) proteins between H471 and HHZ at two time-points after the inoculation with PXO99A.
DOI: 10.6084/m9.figshare.13468305.v1
title: Additional file 7 of Comparative proteomic analysis reveals novel insights into the interaction between rice and Xanthomonas oryzae pv. oryzae

description: Additional file 7. Differentially abundant rice proteins between H471 and HHZ at two time-points after the inoculation with PXO99A.
DOI: 10.6084/m9.figshare.13468295.v1
title: Additional file 2 of Comparative proteomic analysis reveals novel insights into the interaction between rice and Xanthomonas oryzae pv. oryzae

description: Additional file 2 Xanthomonas oryzae pv. oryzae (Xoo) proteins detected in two genotypes at two time-points after the inoculation with PXO99A.
DOI: 10.6084/m9.figshare.13468297.v1
title: Additional file 3 of Comparative proteomic analysis reveals novel insights into the interaction between rice and Xanthomonas oryzae pv. oryzae

description: Additional file 3. Information regarding all identified peptides.
DOI: 10.6084/m9.figshare.13468307.v1
title: Additional file 8 of Comparative proteomic analysis reveals novel insights into the interaction between rice and Xanthomonas oryzae pv. oryzae

description: Additional file 8 GO enrichment analysis of the differentially abundant Xanthomonas oryzae pv. oryzae (Xoo) and rice proteins between H471 and HHZ.
DOI: 10.6084/m9.figshare.14516261.v1
title: Additional file 3 of The impact of cell type and context-dependent regulatory variants on human immune traits

description: Additional file 3 A table for all colocalization results.
DOI: 10.6084/m9.figshare.13468339
title: Additional file 1 of GPX8 is transcriptionally regulated by FOXC1 and promotes the growth of gastric cancer cells through activating the Wnt signaling pathway

description: Additional file 1: Table S1. The information of predicted transcription factors of GPX8.
DOI: 10.6084/m9.figshare.13468339.v1
title: Additional file 1 of GPX8 is transcriptionally regulated by FOXC1 and promotes the growth of gastric cancer cells through activating the Wnt signaling pathway

description: Additional file 1: Table S1. The information of predicted transcription factors of GPX8.
DOI: 10.6084/m9.figshare.25245430.v2
title: Protected areas promote recovery in degraded European rivers

description: The datasets here were used to examine relationships between riverine invertebrate ecological quality (measured as EQR) and protected areas across Europe during 1986-2021. Here, we provide the spatial and temporal EQR and protected area values, in addition to information on initial EQRs, catchment size, anthropogenic land use, and other control variables. The first sheet ("Data") provides the data for each site used in our analyses. The second sheet ("Info") provides a summary and explanation of each variable. Further information on how values were calculated (and transformed if necessary) is provided in either the Info tab or the methods and supporting information of the associated article.
DOI: 10.6084/m9.figshare.19759848
title: Additional file 3 of Randomized single-blind comparative study of the midazolam/pethidine combination and midazolam alone during bronchoscopy

description: Additional file 3. Adverse events during and after bronchoscopy.
DOI: 10.6084/m9.figshare.19759845
title: Additional file 2 of Randomized single-blind comparative study of the midazolam/pethidine combination and midazolam alone during bronchoscopy

description: Additional file 2. Modified Observer’s Assessment of Alertness/Sedation Scale.
DOI: 10.6084/m9.figshare.7701266
title: VAMP associated proteins are required for autophagic and lysosomal degradation by promoting a PtdIns4P-mediated endosomal pathway

description: Mutations in the ER-associated VAPB/ALS8 protein cause amyotrophic lateral sclerosis and spinal muscular atrophy. Previous studies have argued that ER stress may underlie the demise of neurons. We find that loss of VAP proteins (VAPs) leads to an accumulation of aberrant lysosomes and impairs lysosomal degradation. VAPs mediate ER to Golgi tethering and their loss may affect phosphatidylinositol-4-phosphate (PtdIns4P) transfer between these organelles. We found that loss of VAPs elevates PtdIns4P levels in the Golgi, leading to an expansion of the endosomal pool derived from the Golgi. Fusion of these endosomes with lysosomes leads to an increase in lysosomes with aberrant acidity, contents, and shape. Importantly, reducing PtdIns4P levels with a PtdIns4-kinase (PtdIns4K) inhibitor, or removing a single copy of Rab7, suppress macroautophagic/autophagic degradation defects as well as behavioral defects observed in <i>Drosophila Vap33</i> mutant larvae. We propose that a failure to tether the ER to the Golgi when VAPs are lost leads to an increase in Golgi PtdIns4P levels, and an expansion of endosomes resulting in an accumulation of dysfunctional lysosomes and a failure in proper autophagic lysosomal degradation. <b>Abbreviations:</b> ALS: amyotrophic lateral sclerosis; CSF: cerebrospinal fluid; CERT: ceramide transfer protein; FFAT: two phenylalanines in an acidic tract; MSP: major sperm proteins; OSBP: oxysterol binding protein; PH: pleckstrin homology; PtdIns4P: phosphatidylinositol-4-phosphate; PtdIns4K: phosphatidylinositol 4-kinase; UPR: unfolded protein response; VAMP: vesicle-associated membrane protein; VAPA/B: mammalian VAPA and VAPB proteins; VAPs: VAMP-associated proteins (referring to <i>Drosophila</i> Vap33, and human VAPA and VAPB)
DOI: 10.6084/m9.figshare.19759851.v1
title: Additional file 4 of Randomized single-blind comparative study of the midazolam/pethidine combination and midazolam alone during bronchoscopy

description: Additional file 4. Diagnosis of biopsy.
DOI: 10.6084/m9.figshare.15041296.v1
title: Additional file 7 of Mobilization of the nonconjugative virulence plasmid from hypervirulent Klebsiella pneumoniae

description: Additional file 7. Table S6. NCBI accession numbers and genetic characteristics of 85 putative mobilizable virulence plasmids of K. pneumoniae.
DOI: 10.6084/m9.figshare.15041278
title: Additional file 1 of Mobilization of the nonconjugative virulence plasmid from hypervirulent Klebsiella pneumoniae

description: Additional file 1. Table S1. Strains and plasmids used in this study.
DOI: 10.6084/m9.figshare.15041278.v1
title: Additional file 1 of Mobilization of the nonconjugative virulence plasmid from hypervirulent Klebsiella pneumoniae

description: Additional file 1. Table S1. Strains and plasmids used in this study.
DOI: 10.6084/m9.figshare.7701266.v2
title: VAMP associated proteins are required for autophagic and lysosomal degradation by promoting a PtdIns4P-mediated endosomal pathway

description: Mutations in the ER-associated VAPB/ALS8 protein cause amyotrophic lateral sclerosis and spinal muscular atrophy. Previous studies have argued that ER stress may underlie the demise of neurons. We find that loss of VAP proteins (VAPs) leads to an accumulation of aberrant lysosomes and impairs lysosomal degradation. VAPs mediate ER to Golgi tethering and their loss may affect phosphatidylinositol-4-phosphate (PtdIns4P) transfer between these organelles. We found that loss of VAPs elevates PtdIns4P levels in the Golgi, leading to an expansion of the endosomal pool derived from the Golgi. Fusion of these endosomes with lysosomes leads to an increase in lysosomes with aberrant acidity, contents, and shape. Importantly, reducing PtdIns4P levels with a PtdIns4-kinase (PtdIns4K) inhibitor, or removing a single copy of Rab7, suppress macroautophagic/autophagic degradation defects as well as behavioral defects observed in <i>Drosophila Vap33</i> mutant larvae. We propose that a failure to tether the ER to the Golgi when VAPs are lost leads to an increase in Golgi PtdIns4P levels, and an expansion of endosomes resulting in an accumulation of dysfunctional lysosomes and a failure in proper autophagic lysosomal degradation. <b>Abbreviations:</b> ALS: amyotrophic lateral sclerosis; CSF: cerebrospinal fluid; CERT: ceramide transfer protein; FFAT: two phenylalanines in an acidic tract; MSP: major sperm proteins; OSBP: oxysterol binding protein; PH: pleckstrin homology; PtdIns4P: phosphatidylinositol-4-phosphate; PtdIns4K: phosphatidylinositol 4-kinase; UPR: unfolded protein response; VAMP: vesicle-associated membrane protein; VAPA/B: mammalian VAPA and VAPB proteins; VAPs: VAMP-associated proteins (referring to <i>Drosophila</i> Vap33, and human VAPA and VAPB)
DOI: 10.6084/m9.figshare.15041293
title: Additional file 6 of Mobilization of the nonconjugative virulence plasmid from hypervirulent Klebsiella pneumoniae

description: Additional file 6. Table S5. NCBI accession numbers and genetic characteristics of 760 putative conjugative plasmids of K. pneumoniae.
DOI: 10.6084/m9.figshare.15041293.v1
title: Additional file 6 of Mobilization of the nonconjugative virulence plasmid from hypervirulent Klebsiella pneumoniae

description: Additional file 6. Table S5. NCBI accession numbers and genetic characteristics of 760 putative conjugative plasmids of K. pneumoniae.
DOI: 10.6084/m9.figshare.19759845.v1
title: Additional file 2 of Randomized single-blind comparative study of the midazolam/pethidine combination and midazolam alone during bronchoscopy

description: Additional file 2. Modified Observer’s Assessment of Alertness/Sedation Scale.
DOI: 10.6084/m9.figshare.19759848.v1
title: Additional file 3 of Randomized single-blind comparative study of the midazolam/pethidine combination and midazolam alone during bronchoscopy

description: Additional file 3. Adverse events during and after bronchoscopy.
DOI: 10.6084/m9.figshare.15041296
title: Additional file 7 of Mobilization of the nonconjugative virulence plasmid from hypervirulent Klebsiella pneumoniae

description: Additional file 7. Table S6. NCBI accession numbers and genetic characteristics of 85 putative mobilizable virulence plasmids of K. pneumoniae.
DOI: 10.6084/m9.figshare.19759851
title: Additional file 4 of Randomized single-blind comparative study of the midazolam/pethidine combination and midazolam alone during bronchoscopy

description: Additional file 4. Diagnosis of biopsy.
DOI: 10.6084/m9.figshare.19759866
title: Additional file 8 of Opsin1 regulates light-evoked avoidance behavior in Aedes albopictus

description: Additional file 8: Table S1. Summary of Ae. albopictus, Ae. aegypti and Cx. quinquefasciatus opsin genes. Table S2. Primers for qPCR and dsRNA synthesis.
DOI: 10.6084/m9.figshare.19759866.v1
title: Additional file 8 of Opsin1 regulates light-evoked avoidance behavior in Aedes albopictus

description: Additional file 8: Table S1. Summary of Ae. albopictus, Ae. aegypti and Cx. quinquefasciatus opsin genes. Table S2. Primers for qPCR and dsRNA synthesis.
DOI: 10.6084/m9.figshare.15041289.v1
title: Additional file 9 of Genome-wide analysis of MYB transcription factors of Vaccinium corymbosum and their positive responses to drought stress

description: Additional file 9: Table S6. Primer sequences were used in the experiment.
DOI: 10.15468/dl.59pjrx
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rondeletia intermixta Britton"
 ]
}

 The dataset includes 24 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192346-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.