cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4225/49/57b10910d7ace
title: Phase2_ParticipantInfo_deident_data.xlsx

description: Demographic data collected from a study related to AQ
DOI: 10.4225/49/57d0f3611d00a
title: MHCIIB exon 2 sequence data (Pardalotidae) supporting the following publication: MHC class II β exon 2 variation in pardalotes (Pardalotidae) is shaped by selection, recombination and gene conversion

description: 159bp fragments of the MHC class II β exon 2 region in two pardalote species, the spotted (<i>Pardalotus punctatus</i>) and striated pardalote (<i>P. striatus</i>)
DOI: 10.4225/49/57d325e0c6437
title: Assessing error awareness as a mediator of the relationship between subjective concerns and cognitive performance in older adults

description: This dataset involves participant information using an error awareness task (EAT), cognitive variables, and subjective cognitive decline questionnaire (SCD), along with composites described in a Plos ONE paper that is currently under review. Please contact Rachel Buckley (rachel.buckley@unimelb.edu.au) for further information.
DOI: 10.4225/49/57d4e1a088f67
title: Data for the cohort study by Sathish et al

description: The datasets are for a cohort study conducted in rural Kerala state in India (2003-2010) to assess the longitudinal change in risk factors for diabetes.
DOI: 10.4225/49/57df2aee61b76
title: Raw data, Potvin et al. (2016) Genetic erosion and escalating extinction risk in frogs with increasing wildfire frequency

description: Genetic data for 841 individual frogs in the genus<i> Litoria</i> sampled pre- and post-fire in the Kinglake region, Victoria, Australia <br>
DOI: 10.4225/49/5857103aedb42
title: Australian National Poetry Anthologies: Poems and Poets

description: This dataset is derived from the tables of contents of fifteen Australian ‘national’ poetry anthologies published between 1946 and 2011. Dataset contains all poems and poets included in the following anthologies:George Mackanness, <i>Poets of Australia: An Anthology of Australian Verse</i>, 1946 George Mackanness, <i>An Anthology of Australian Verse</i> (2nd ed.), 1952 Judith Wright, <i>A Book of Australian Verse</i>, 1956John Thompson, Kenneth Slessor and R. G. Howarth, <i>The Penguin Book of Australian Verse</i>, 1958 Judith Wright, <i>A Book of Australian Verse</i> (2nd ed.), 1968Harry Heseltine, <i>The Penguin Book of Australian Verse</i>, 1972 Geoffrey Dutton, <i>Australian Verse from 1805: A Continuum</i>, 1975 Rodney Hall, <i>The Collins Book of Australian Poetry</i>, 1981Geoffrey Dutton, <i>The Heritage of Australian Poetry</i>, 1984 Les Murray, <i>The New Oxford Book of Australian Verse</i>, 1986 Les Murray, <i>The New Oxford Book of Australian Verse</i> (2nd ed.), 1991John Leonard, <i>Australian Verse: An Oxford Anthology</i>, 1998John Leonard, <i>The Puncher & Wattmann Anthology of Australian Poetry</i>, 2009 John Kinsella, <i>The Penguin Anthology of Australian Poetry</i>, 2009 Geoffrey Lehmann and Robert Gray, <i>Australian Poetry Since 1788</i>, 2011 Excel is used to store and organise all data derived from anthology tables of contents. Separate Excel tabs have been created for each anthology. The contents of these tabs have been combined to create three consolidated spreadsheets: ‘Consolidated - By anthology’, ‘Consolidated - by poem’ and ‘Consolidated - By poet’
DOI: 10.4225/49/586ee9e014e25
title: Characterisation of Adar1 E861A, Ifih1 -/- mouse

description: To be added
DOI: 10.4225/49/588574690c0ec
title: Soil-atmosphere methane exchange data for AU-WOM and AU-WRR with soil environmental variables

description: Data measured with automated soil greenhouse gas monitoring system at AU-WOM (Wombat State forest, Victoria Australia) and AU-WRR (Warra LTER, Tasmania, Australia) in 2010 and 2011. Includes QCed time series of single chamber data and associated soil volumetric moisture and soil temperature data.
DOI: 10.4225/49/588eeeeda28af
title: Database of Embodied Energy and Water Values for Materials

description: PLEASE NOTE THAT THIS DATABASE HAS BEEN SUPERSEDED BY THE EPiC DATABASE, AVAILABLE AT https://doi.org/10.26188/5dc228ef98c5a<br>Database of embodied energy and water coefficients for main construction materials used to calculate embodied energy and water of buildings and related built environment infrastructure.
DOI: 10.4225/49/588fe00f3562a
title: Horsham_reflectance.dat

description: Hyperspectral data over AgFACE site in Horsham, VIC, Australia<br>
DOI: 10.4225/49/5893d7ad062e7
title: MHCIIB exon 2 sequences supporting the publication: Associations among habitat configuration, sex-biased dispersal and MHC class II β genetic variation in the brown treecreeper (Climacteris picumnus)

description: 198 MHCIIB exon 2 sequences from the brown treecreeper, Climacteris picumnus, sequenced using 454 sequencing techniques
DOI: 10.4225/49/589c2ef7128ac
title: Shigella sonnei 53G IS-free genome (Genbank)

description: A copy of the <i>Shigella sonnei </i>53G genome (accession NC_016822), with all insertion sequences removed.
DOI: 10.4225/49/589c305ea8b91
title: Shigella dysenteriae Sd197 IS-free genome (Genbank)

description: A copy of the <i>Shigella dysenteriae</i> Sd197 genome, with all insertion sequences removed.
DOI: 10.4225/49/589c30d1e976b
title: Shigella flexneri 2a strain 301 IS-free genome (Genbank)

description: A copy of the <i>Shigella flexneri</i> 2a strain 301 reference genome, with all insertion sequences removed.
DOI: 10.4225/49/58a458f42df43
title: Experiment 12/2016 Final Data - csv

description: This is the final dataset to be published.
DOI: 10.4225/49/58a45a939d16a
title: Experiment 12/2016 Final Data - csv 2017 update

description: demonstration
DOI: 10.4225/49/58b5126cdf51a
title: UniFun deleterious

description: UniFun pathogenic VCF
DOI: 10.4225/49/58b60e8b75c18
title: UniFun benign variants

description: UniFun benign variants
DOI: 10.4225/49/58b60edaa6432
title: UniFun deleterious variants

description: UniFun deleterious variants
DOI: 10.4225/49/58c73ed926954
title: pizza.json

description: An example json file to test figshare
DOI: 10.4225/49/58e58a8dc39a6
title: Example data simulated using the R package survtd

description: This example dataset is used to illustrate the usage of the R package survtd in the Supplementary Materials of the paper:<br>Moreno-Betancur M, Carlin JB, Brilleman SL, Tanamas S, Peeters A, Wolfe R (2017). Survival analysis with time-dependent covariates subject to measurement error and missing data: Two-stage joint model using multiple imputation (submitted).<br>The data was generated using the simjm function of the package, using the following code:dat<br>Use ?simjm in R for more details about how the data is generated by this function and the variables in the resulting dataset (the package can be installed from https://github.com/moreno-betancur/survtd, where a user manual is also provided)<br><br>
DOI: 10.4225/49/5910f69c99573
title: Raw data for "A Novel Genetic Technique in Plasmodium berghei Allows Liver Stage Analysis of Genes Required for Mosquito Stage Development and Demonstrates that de novo Heme Synthesis is Essential for Liver Stage Development in the Malaria Parasite" - FCKO crosses - oocyst size, motility, liver stage size and nuclei.pzfx

description: data set for of oocyst sizes<br><br>
DOI: 10.4225/49/5910f69c9960d
title: Raw data for "A Novel Genetic Technique in Plasmodium berghei Allows Liver Stage Analysis of Genes Required for Mosquito Stage Development and Demonstrates that de novo Heme Synthesis is Essential for Liver Stage Development in the Malaria Parasite" FCKO crosses - MSP1.pzf

description: dataset msp1 assay<br>
DOI: 10.4225/49/591297f595df0
title: Raw data for "A Novel Genetic Technique in Plasmodium berghei Allows Liver Stage Analysis of Genes Required for Mosquito Stage Development and Demonstrates that de novo Heme Synthesis is Essential for Liver Stage Development in the Malaria Parasite" - Fig images

description: Images from fig 2<br>
DOI: 10.4225/49/5924e18bea379
title: Klebsiella genome assemblies used in Wyres et al MGen 2016: Identification of Klebsiella capsule synthesis loci from whole genome data

description: <b>If you use these assemblies please cite the publication below and acknowledge the relevant database and/or original research articles describing the raw sequence data.</b><br> Wyres, K.L., Wick, R.R., Gorrie, C., Jenney, A., Follador, R, Thomson, N.R. and Holt K.E. Identification of Klebsiella capsule synthesis loci from whole genome data. (2016) MGen 2, doi: 10.1099/mgen.0.000102The assemblies include those available in the Patric online database and from the NCTC3000 genomes project plus assemblies generated by the Holt Lab. Please see the above paper in MGen for a description of the assembly method and citations for the raw sequence reads.
DOI: 10.4225/49/5940d4fb22c26
title: Genetic data for squirrel gliders (Petaurus norfolcensis) along the Hume Highway in south-east Australia 2005-2013_Soanes et al.csv

description: Genotype data for 399 squirrel gliders (Petaurus norfolcensis) at 8 micro satellite loci. The data support the publication "Evaluating the success of wildlife crossing structures using genetic approaches and an experimental design: lessons from a gliding mammal", Journal of Applied Ecology, 2017 (DOI to follow). Study was conducted along the Hume Highway in south-east Australia, 2005-2013. Data are provided for 13 sites divided into 4 treatment types, before and after crossing structures were added to a highway. Genotypes were first grouped into genetic regions (southern, central and northern) and then population structure within each region (among sites, sides of the highway, and time periods) were investigated. Contact Kylie Soanes for further information (ksoanes@unimelb.edu.au). Microsatellite loci are described in Millis 2000 (Molecular Ecology) and Soanes et al 2014 (Conservation Genetic Resources).
DOI: 10.4225/49/5959b52029e5c
title: Synthetic Shigella plasmid reads

description: This is a sample read set for use in Unicycler. It is linked to in the Unicycler README so people who install Unicycler can get a small read set to make sure the program works.<br>The files contain synthetic reads from plasmids A, B and E from the <i>Shigella sonnei</i> 53G genome assembly. The short and long reads were generated using ART and PBSIM, respectively.
DOI: 10.4225/49/5959d352ba0ab
title: Helicobacter pylori SAMN06173313 reads

description: This is a sample read set for use in Unicycler. It is linked to in the Unicycler README so people who install Unicycler can get a small read set to make sure the program works.<br>The files contain Illumina and PacBio reads from <i>Helicobacter pylori</i> biosample SAMN06173313. The SRA run accessions are SRR5413256 and SRR5413257. These files do not contain the full set of reads from these run. Rather, they have been subsampled down to create smaller files, easier to download. The PacBio reads were subsampled based on quality and are a high-quality subset of the original reads.<br>The <i>Helicobacter pylori</i> genome is small and simple. It has only two copies of the RNA operon and no other large repeats, making it very easy to assemble compared to most bacterial genomes.
DOI: 10.4225/49/5959d3e700300
title: Streptococcus pyogenes SAMN04875527 reads

description: This is a sample read set for use in Unicycler. It is linked to in the Unicycler README so people who install Unicycler can get a small read set to make sure the program works.<br>The files contain Illumina and PacBio reads from <i>Streptococcus pyogenes</i> biosample SAMN04875527. The SRA run accessions are SRR4242236 and SRR4242237. These files do not contain the full set of reads from these run. Rather, they have been subsampled down to create smaller files, easier to download. The PacBio reads were subsampled based on quality and are a high-quality subset of the original reads.<br>The <i>Streptococcus pyogenes</i> genome is particularly small and simple and is relatively easy to assemble with Illumina reads. It does have a few repetitive elements, however, including five copies of the RNA operon and six copies of IS1548.
DOI: 10.4225/49/595c46a0b3dea
title: Raw Illumina reads

description: These files contain the Illumina reads before trimming with Trim Galore.<br>SRA accessions for these read sets:ERR1023775, ERR1023792, SRR5665579, SRR5665578, ERR1008714, ERR1008775, ERR1023649, ERR1023671, ERR1015321, SRR5665581, SRR5665580, ERR1023685<br>
DOI: 10.4225/49/595c46a6c49da
title: Trimmed Illumina reads

description: These files contain the Illumina reads after trimming with Trim Galore.<br>The full set of untrimmed reads are available in SRA:ERR1023775, ERR1023792, SRR5665579, SRR5665578, ERR1008714, ERR1008775, ERR1023649, ERR1023671, ERR1015321, SRR5665581, SRR5665580, ERR1023685
DOI: 10.4225/49/595c46ae5efb4
title: Basecalled ONT reads

description: These files contain the ONT reads as produced by the Albacore basecaller (before Porechop trimming and demultiplexing).<br>The set of adapter trimmed reads (after Porechop, no subsampling) are available in SRA:SRR5665597, SRR5665596, SRR5665591, SRR5665590, SRR5665593, SRR5665592, SRR5665595, SRR5665594, SRR5665601, SRR5665600, SRR5665599, SRR5665598<br>
DOI: 10.4225/49/595c4a79d3ed2
title: SPAdes (v3.10.1) assemblies (Illumina-only)

description: SPAdes assemblies of 12 isolates of <i>Klebsiella pneumoniae</i>, generated with Illumina reads.
DOI: 10.4225/49/595c4a84df0c4
title: Unicycler (v0.4.0) assemblies (Illumina-only)

description: Unicycler assemblies of 12 isolates of <i>Klebsiella pneumoniae</i>, generated with Illumina reads.
DOI: 10.4225/49/595c4af30c3bb
title: Canu (v1.5, f356c2c) assemblies (ONT-only)

description: Canu assemblies of 12 isolates of <i>Klebsiella pneumoniae</i>, generated with ONT reads.
DOI: 10.4225/49/595c4af8d43e2
title: Canu (v1.5, f356c2c) + Nanopolish (v0.7.0) assemblies (ONT-only)

description: Canu+Nanopolish assemblies of 12 isolates of <i>Klebsiella pneumoniae</i>, generated with ONT reads.
DOI: 10.4225/49/595c4b1d1e0c7
title: Unicycler (v0.4.0) assemblies (ONT-only)

description: Unicycler assemblies of 12 isolates of <i>Klebsiella pneumoniae</i>, generated with ONT reads.
DOI: 10.4225/49/595c4b587b3ce
title: SPAdes (v3.10.1) assemblies (hybrid Illumina and ONT)

description: SPAdes assemblies of 12 isolates of Klebsiella pneumoniae, generated with Illumina and ONT reads.
DOI: 10.4225/49/595c4b996aa61
title: Canu (v1.5, f356c2c) + 1 x Pilon (v1.22) assemblies (hybrid Illumina and ONT)

description: Canu assemblies of 12 isolates of <i>Klebsiella pneumoniae</i>, generated with ONT reads, followed by one round of Pilon polishing using Illumina reads.<br>
DOI: 10.4225/49/595c4b9f0ec88
title: Canu (v1.5, f356c2c) + 2 x Pilon (v1.22) assemblies (hybrid Illumina and ONT)

description: Canu assemblies of 12 isolates of <i>Klebsiella pneumoniae</i>, generated with ONT reads, followed by two rounds of Pilon polishing using Illumina reads.
DOI: 10.4225/49/595c4bac465a8
title: Canu (v1.5, f356c2c) + 4 x Pilon (v1.22) assemblies (hybrid Illumina and ONT)

description: Canu assemblies of 12 isolates of <i>Klebsiella pneumoniae</i>, generated with ONT reads, followed by four rounds of Pilon polishing using Illumina reads.
DOI: 10.4225/49/5971f92748318
title: bg_2016_192_dataset_WombatForest_DINGOoutput_2010_2012.csv

description: DINGO output of EC-data set for Wombat State Forest Ozflux site from 2010 to 2012 presented in the journal Biogeoscience bg-2016-192 "Net ecosystem carbon exchange in a dry temperate eucalypt forest"<br>
DOI: 10.4225/49/5978339280d3b
title: C3DIS 2017 presentation: Enhancing research with VicNode: from campus instruments to international data consortia

description: Presentation by Dr. Steven Manos and Stephen Dart at the CSIRO Conference on Computational and Data Intensive Science, 2017 (C3DIS 2017).<br>The original Powerpoint file is provided with rough notes, as well as a PDF copy with notes included.
DOI: 10.4225/49/5986bde74f8f5
title: Overview of Australian institution and UK/USA funding body data management plan mandates

description: Table summarising UK and USA funding body, and Australian institution, mandates for data management plans. Includes supporting links and statistics.<br>Data were collected through searching the internet, including internet archives, for evidence of date of implementation of broad DMP mandate.<br><br>Data were collected in August 2017.
DOI: 10.4225/49/5987e14e9b530
title: Microevolution of Acinetobacter baumannii on a single patient

description: Hybrid genome assemblies (Illumina + Nanopore) for nine Acinetobacter baumannii genomes isolated from three patients in the ICU of a Melbourne hospital. A1 and A23 are from two different patients, and the remaining samples come from a single patient. Genomes were assembled using Unicycler (https://github.com/rrwick/Unicycler), and annotated using RAST. <br>Eight of the genomes are completed assemblies with a chromosome and plasmid. A3 does not contain the plasmid. A23 was unable to be completely assembled, and is broken into 176 contigs.
DOI: 10.4225/49/599b9ed209e71
title: Simple CSV

description: A test
DOI: 10.4225/49/59a5028cf39d6
title: Raw ONT reads - barcode 1

description: This file contains raw ONT reads (fast5 files) for the first sample (barcode 1, sample name INF042) of the barcoded MinION run. Shorter reads with a fast5 file size less than 100 kb were excluded.
DOI: 10.4225/49/59a7541053aed
title: Bennettetal2017_EcologicalApplications_CarboninFireTolerantEucForests.xlsx

description: Data relevant to figures in paper published in Ecological Applications (Bennett et al., 2017, Assessing fire impacts on the carbon stability of fire-tolerant forests
DOI: 10.4225/49/59bc7ded20548
title: McColl-GausdenandPenman_Forests_VisualAssessmentandDestructiveSamplingFuelLoad.xlsx

description: Field data associated with "Visual assessment of surface fuel loads does not align with destructively sampled surface fuels"
DOI: 10.4225/49/59bf1ed76f94f
title: ENDIA microbiome QC OTUs and metadata

description: OTU tables as .biom files, and associated metadata, used in paper currently titled"Influence of fecal collection conditions and 16S rRNA gene sequencing protocols at two centers on human gut microbiota analysis"Sequence data is deposited with SRA with identifier SRP116702The study is registered with NCBI as BioProject PRJNA393083
DOI: 10.4225/49/59e3ee30cdbbc
title: Multi-century cool and warm season rainfall reconstructions forAustralia’s major climatic regions: Data and additional information on a seasonal rainfall reconstruction of major the eight natural resource management regions (NRM) based on paleoclimate data

description: <b>Additional information and datasets</b> used in Freund et al. 2017, Multi-century cool and warm season rainfall reconstructions of Australia's major climatic regions.-------------------------------------------------------------------------------<br> Files includes all primary input and output files. <b>Input files</b>: The bi-seasonal NRM regional averages based in AWAP<b>Output files</b>: Bi-seasonal reconstructions for cool and warm season for all NRM regions <br><b>Warm</b> and <b>Cool</b> season* rainfall for the eight Natural Resource Management (NRM)** regions<br> ---------------------------------------------------------------------------<br>File format provided: netcdf (.nc) and text format (.txt)<br>---------------------------------------------------------------------------<br><b>1)</b> Instrumental regional averages for each NRM region (1900-2015) based on the gridded Australian Water Availability Project (AWAP)<br><b>2)</b> Reconstructed regional averages for each NRM region (1200-2015) based on a network of palaeoclimate records from the Southern Hemisphere<br>---------------------------------------------------------------------------<br>* Warm season (average precipitation in: Oct, Nov, Dec, Jan, Feb, Mar)* Cool season (average precipitation in: Apr, May, Jun, Jul, Aug, Sep)<br><br>** NRM regions are defined by the CSIRO and Bureau of Meteorology (https://www.climatechangeinaustralia.gov.au/en/climate-projections/about/modelling-choices-and-methodology/regionalisation-schemes/) and should cited as followed: CSIRO and Bureau of Meteorology 2015, Climate Change in Australia Information for Australia's Natural Resource Management Regions: Technical Report, CSIRO and Bureau of Meteorology, Australia,2015.<br>Regions: <b>CS</b>-Central Slopes<b>EC</b>-East Coast<b>MB</b>-Murray Basin<b>MN</b>-Monsoonal North<b>R</b>-Rangelands<b>SS</b>-Southern Slopes<b>SSWF</b>-Southern and South-Western Flatlands<b>WT</b>-Wet Tropics<br><br><br><b>Please cite and find further details in:</b>Freund, M., Henley, B. J., Karoly, D. J., Allen, K. J. and Baker, P. J.: Multi-century cool- and warm-season rainfall reconstructions for Australia's major climatic regions, Clim. Past, 13(12), 1751–1770, doi:10.5194/cp-13-1751-2017, 2017.https://www.clim-past.net/13/1751/2017/cp-13-1751-2017.html<br>
DOI: 10.4225/49/5a01806212b0c
title: Kujala et al (2017) Spatial characteristics of species distributions as drivers in conservation prioritization - Data

description: Results of species-specific impacts on priority patterns and the spatial characteristics of each species. <br>The table gives numerical values for each species. Headings in this table correspond to:<br><br>set = species setn = total number of species in the setsp = species j IDcoverage = proportion of study area covered by species j distributionJ = mean Jaccard index between species j and all other species in the same setspn = average species richness within species j distributioncor = spatial correlation between the distribution of species j and the priorities built without itrankdiff = absolute difference in priority ranks when species j includedAUC = mean difference in protection of all other species in a set when species j is included, measured using the area under the curve (AUC)aoi = study area, GH: Greater Hunter, FIN: Finland<br>The zip file includes the spatial priority maps for the Finnish bird data set.<br><br>Updates to this data:2 Jan 2018 - table of species values updated as AUC values for species set sizes of 50 accidentally missing in the previous version.<br>2 Jan 2018 - added prioritisation results for the Finnish bird data set
DOI: 10.4225/49/5a08cd8d05224
title: Supplementary Table 9

description: Ensemble gene IDs of Tasmanian devil reference genes and vertebrate orthologs
DOI: 10.4225/49/5a08ce33c2b82
title: Supplementary Table 10

description: Matrix of observed/expected homoplasy and branch lengths.
DOI: 10.4225/49/5a08ceab474c5
title: Supplementary Table 12

description: Thylacine positively selected genes
DOI: 10.4225/49/5a08cf15b6463
title: Supplementary Table 13

description: Canid (Canindae, Caninae) positively selected genes
DOI: 10.4225/49/5a08cf577cf93
title: Supplementary Table 16

description: Tasmanian devil positively selected genes
DOI: 10.4225/49/5a08cf9d6f605
title: Supplementary Table 17

description: Bovidae positively selected genes
DOI: 10.4225/49/5a08d62826326
title: Table S8

description: Thylacine Accerated Regions (TARs)
DOI: 10.26188/5b468ca4a9d65
title: Beyond Mars and Venus: The role of gender essentialism in support for gender inequality and backlash.

description: <b>AU = Australia</b><b>DK = Denmark</b><b>blGender = Gender</b><b>blAgency = Agency</b><b>blCommunality = Communality</b><b>blCompetence = Competence</b><b>blNegemo = Negative emotion</b><b>blOutrage = Moral outrage</b><b>mean GE = Gender Essentialism Scale (GES) score</b><b>binary GE = low or high GES score</b><b>SRES = Sex Roles Egalitarianism Scale score</b><b>SDO = Social Dominance Orientation</b><b>Discrim = Support for discriminatory practices</b><b>Fairness = Perceived fairness of gender-based treatment</b><b>politicalOrientation = Political orientation</b><b>Vote = vote for candidate</b>
DOI: 10.26188/5b472c28d9089
title: Coal capacity factors in the NEM, 2017-18

description: The pdf contains contains summary tables of the registered capacity, output and capacity factor of the coal firedpower stations in the National Electricity Market (NEM) for the 2017-2018 financial year.<br><br>The csvs contain the same data in csv format. <br><br><br>