cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25620775
title: Loss-Based Variational Bayes Prediction

description: We propose a new approach to Bayesian prediction that caters for models with a large number of parameters and is robust to model misspecification. Given a class of high-dimensional (but parametric) predictive models, this new approach constructs a posterior predictive using a variational approximation to a generalized posterior that is directly focused on predictive accuracy. The theoretical behavior of the new prediction approach is analyzed and a form of optimality demonstrated. Applications to both simulated and empirical data using high-dimensional Bayesian neural network and autoregressive mixture models demonstrate that the approach provides more accurate results than various alternatives, including misspecified likelihood-based predictions. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.25620775.v1
title: Loss-Based Variational Bayes Prediction

description: We propose a new approach to Bayesian prediction that caters for models with a large number of parameters and is robust to model misspecification. Given a class of high-dimensional (but parametric) predictive models, this new approach constructs a posterior predictive using a variational approximation to a generalized posterior that is directly focused on predictive accuracy. The theoretical behavior of the new prediction approach is analyzed and a form of optimality demonstrated. Applications to both simulated and empirical data using high-dimensional Bayesian neural network and autoregressive mixture models demonstrate that the approach provides more accurate results than various alternatives, including misspecified likelihood-based predictions. Supplementary materials for this article are available online.
DOI: 10.15468/dl.4g5wqu
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habenaria drepanopetala Pabst"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235866-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.neck74
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is incertae sedis",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((12.947524 41.363681,12.947341 41.363802,12.946924 41.364132,12.946618 41.364363,12.946231 41.364669,12.945003 41.365589,12.944474 41.365985,12.943767 41.366469,12.942635 41.367201,12.941341 41.368137,12.939809 41.369121,12.939479 41.36934,12.938189 41.370199,12.937034 41.370959,12.936151 41.371561,12.935578 41.371914,12.935113 41.372231,12.934555 41.372656,12.933388 41.373439,12.932941 41.373724,12.932468 41.374006,12.932191 41.374169,12.931524 41.374561,12.931211 41.374742,12.930172 41.375372,12.92911 41.376007,12.928633 41.376334,12.928049 41.376715,12.927743 41.376896,12.927287 41.377137,12.926443 41.377625,12.924944 41.378554,12.924449 41.3789,12.92406 41.379111,12.923723 41.379285,12.923391 41.379449,12.923084 41.379622,12.922718 41.379855,12.921953 41.380363,12.921422 41.380705,12.921139 41.380877,12.920304 41.381301,12.919944 41.381485,12.918959 41.382108,12.917656 41.38295,12.917149 41.383282,12.916723 41.383495,12.916432 41.383638,12.916353 41.383701,12.91779 41.385081,12.918719 41.385833,12.919685 41.386329,12.921106 41.386594,12.930786 41.386694,12.933518 41.386815,12.933534 41.386797,12.936313 41.387153,12.936314 41.387148,12.93644 41.387161,12.93646 41.387142,12.936524 41.387145,12.940219 41.38446,12.942677 41.382758,12.951876 41.378298,12.952051 41.378204,12.954568 41.377312,12.955406 41.376615,12.958689 41.373214,12.959004 41.37286,12.958878 41.372758,12.95869 41.372608,12.956715 41.371019,12.947727 41.363791,12.947578 41.36367,12.947566 41.363661,12.947561 41.363657,12.947524 41.363681)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030493-230530130749713/datasets/export for details.
DOI: 10.15468/dl.s26rbp
title: Occurrence Download

description: A dataset containing 187 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dryophytes bocourti (Mocquard, 1899)"
 ]
}

 The dataset includes 187 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004915-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sqdcfz
title: Occurrence Download

description: A dataset containing 1750 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vicugna vicugna (Molina, 1782)"
 ]
}

 The dataset includes 1750 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029460-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttwkm6
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oenothera dissecta A.Gray ex S.Watson"
 ]
}

 The dataset includes 22 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237550-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8p825d
title: Occurrence Download

description: A dataset containing 1481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is North America",
 "Country is one of (United States of America, Canada, Mexico)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Formica neogagates Viereck, 1903"
 ]
}

 The dataset includes 1481 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004916-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.feamk5
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helianthella gypsophila B.L.Turner"
 ]
}

 The dataset includes 154 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238436-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4mxdmv
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hartliella suffruticosa (Lisowski & Mielcarek) Eb.Fisch."
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237549-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11577546
title: Identifying cell states in single-cell RNA-seq data at statistically maximal resolution

description: In this repository we provide the datasets for the results of the Cellstates method as shown in the article: “Identifying cell states in single-cell RNA-seq data at statistically maximal resolution” by Pascal Grobecker, Thomas Sakoparnig, and Erik van Nimwegen.

A preprint is available under the following DOI:  https://doi.org/10.1101/2023.10.31.564980

There is a README file that describes the contents and formats of each of the tab-separated values files. There is one subdirectory containing files with Cellstates' results on the dataset of Zeisel et al. (DOI: 10.1016/j.cell.2018.06.021) which is accompanied by another README file describing the formats and contents of these files.
DOI: 10.5281/zenodo.11577547
title: Identifying cell states in single-cell RNA-seq data at statistically maximal resolution

description: In this repository we provide the datasets for the results of the Cellstates method as shown in the article: “Identifying cell states in single-cell RNA-seq data at statistically maximal resolution” by Pascal Grobecker, Thomas Sakoparnig, and Erik van Nimwegen.

A preprint is available under the following DOI:  https://doi.org/10.1101/2023.10.31.564980

There is a README file that describes the contents and formats of each of the tab-separated values files. There is one subdirectory containing files with Cellstates' results on the dataset of Zeisel et al. (DOI: 10.1016/j.cell.2018.06.021) which is accompanied by another README file describing the formats and contents of these files.
DOI: 10.15468/dl.354m35
title: Occurrence Download

description: A dataset containing 1079 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nichallea soyauxii (Hiern) Bridson"
 ]
}

 The dataset includes 1079 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235869-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnegkv
title: Occurrence Download

description: A dataset containing 504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Panthera onca (Linnaeus, 1758)",
 "Year 2018-2022"
 ]
}

 The dataset includes 504 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010169-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkndad
title: Occurrence Download

description: A dataset containing 5249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 "TaxonKey is Otiorhynchus sulcatus (Fabricius, 1775)"
 ]
}

 The dataset includes 5249 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237551-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25594361
title: Data Nuggets: A Method for Reducing Big Data While Preserving Data Structure

description: Big data, with <i>N</i> × <i>P</i> dimension where <i>N</i> is extremely large, has created new challenges for data analysis, particularly in the realm of creating meaningful clusters of data. Clustering techniques, such as K-means or hierarchical clustering are popular methods for performing exploratory analysis on large datasets. Unfortunately, these methods are not always possible to apply to big data due to memory or time constraints generated by calculations of order P*N(N−1)2. To circumvent this problem, typically the clustering technique is applied to a random sample drawn from the dataset; however, a weakness is that the structure of the dataset, particularly at the edges, is not necessarily maintained. We propose a new solution through the concept of “data nuggets”, which reduces a large dataset into a small collection of nuggets of data, each containing a center, weight, and scale parameter. The data nuggets are then input into algorithms that compute methods such as principal components analysis and clustering in a more computationally efficient manner. We show the consistency of the data nuggets based covariance estimator and apply the methodology of data nuggets to perform exploratory analysis of a flow cytometry dataset containing over one million observations using PCA and K-means clustering for weighted observations. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.25594361.v1
title: Data Nuggets: A Method for Reducing Big Data While Preserving Data Structure

description: Big data, with <i>N</i> × <i>P</i> dimension where <i>N</i> is extremely large, has created new challenges for data analysis, particularly in the realm of creating meaningful clusters of data. Clustering techniques, such as K-means or hierarchical clustering are popular methods for performing exploratory analysis on large datasets. Unfortunately, these methods are not always possible to apply to big data due to memory or time constraints generated by calculations of order P*N(N−1)2. To circumvent this problem, typically the clustering technique is applied to a random sample drawn from the dataset; however, a weakness is that the structure of the dataset, particularly at the edges, is not necessarily maintained. We propose a new solution through the concept of “data nuggets”, which reduces a large dataset into a small collection of nuggets of data, each containing a center, weight, and scale parameter. The data nuggets are then input into algorithms that compute methods such as principal components analysis and clustering in a more computationally efficient manner. We show the consistency of the data nuggets based covariance estimator and apply the methodology of data nuggets to perform exploratory analysis of a flow cytometry dataset containing over one million observations using PCA and K-means clustering for weighted observations. Supplementary materials for this article are available online.
DOI: 10.15468/dl.jf3esn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Harveya anisodonta C.A.Sm."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237562-230224095556074/datasets/export for details.
DOI: 10.15468/dl.z64x32
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habenaria elatius Ridl."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235886-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77wtk2
title: Occurrence Download

description: A dataset containing 2107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Physalaemus cuvieri Fitzinger, 1826"
 ]
}

 The dataset includes 2107 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009268-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hwc9kp
title: Occurrence Download

description: A dataset containing 3860 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helianthemum almeriense Pau"
 ]
}

 The dataset includes 3860 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238454-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5n98b3
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.57843 -49.91403,-62.84508 -50.81232,-62.34603 -39.83325,-67.087 -34.99248,-67.40269 -30.75783,-66.24515 -27.49568,-73.92698 -28.44276,-78.54094 -46.41746,-74.24846 -40.04573,-72.53582 -40.91952,-72.58241 -43.12135,-71.57843 -49.91403))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Colliguaja integerrima Gillies & Hook."
 ]
}

 The dataset includes 255 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237560-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4t4y25
title: Occurrence Download

description: A dataset containing 366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is one of (Colombia, Peru, Brazil, Ecuador, Venezuela (Bolivarian Republic of), Argentina, Bolivia (Plurinational State of), Paraguay)",
 "OccurrenceStatus is Present",
 "TaxonKey is Caluromys lanatus (Olfers, 1818)"
 ]
}

 The dataset includes 366 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009311-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mnb3w
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helianthemum cirae A.Santos"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238469-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4zyr3
title: Occurrence Download

description: A dataset containing 21831 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bemisia tabaci (Gennadius, 1889)"
 ]
}

 The dataset includes 21831 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235887-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gcyzct
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Sorghum arundinaceum (Desv.) Stapf"
 ]
}

 The dataset includes 21 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237563-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uj7h6c
title: Occurrence Download

description: A dataset containing 10335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is one of (Heliconiaceae, Heliconia gigantea W.J.Kress & Betancur)"
 ]
}

 The dataset includes 10335 records from 237 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010173-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gmq86r
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habenaria elliptica Wight"
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235889-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zgzt7n
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ancognatha quadripunctata Bates, 1888"
 ]
}

 The dataset includes 38 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238449-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evp8cb
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Harveya andongensis Hiern"
 ]
}

 The dataset includes 13 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237561-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xv98v8
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helianthemum buschii (Palib.) Juz. & Pozdeeva"
 ]
}

 The dataset includes 21 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238462-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5x7aje
title: Occurrence Download

description: A dataset containing 6329 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macrosiphum euphorbiae (Thomas, 1878)"
 ]
}

 The dataset includes 6329 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009708-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujfdj2
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habenaria dusenii Schltr."
 ]
}

 The dataset includes 37 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235870-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uytvsq
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Harveya bolusii Kuntze"
 ]
}

 The dataset includes 73 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237566-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9pmtg
title: Occurrence Download

description: A dataset containing 1930 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helianthemum aegyptiacum (L.) Mill."
 ]
}

 The dataset includes 1930 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238450-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qutxmf
title: Occurrence Download

description: A dataset containing 184 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elysia velutinus Pruvot-Fol, 1947"
 ]
}

 The dataset includes 184 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010172-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jc336y
title: Occurrence Download

description: A dataset containing 134710 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophrys apifera Huds."
 ]
}

 The dataset includes 134710 records from 1016 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010764-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.