cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7482440.v1
title: New high-yielding conventional soybean adapted to the states of Goiás, Minas Gerais and Mato Grosso, Brazil

description: ABSTRACT. This paper aims to present the features of the new soybean cultivar UFUS Milionária, which was developed by the Soybean Improvement Program of the Federal University of Uberlândia (UFU) through crossing between IAC-100 and Cristalina RCH cultivars, using the Single Seed Descent (SSD) method. UFUS Milionária is resistant to many diseases caused by the fungus, bacteria, and virus. In addition, it also has been proved well-adapted to many Brazilian states, showing high yield even under water deficit conditions and Asian-rust infection; average yield was 4,451 kg ha-1 in 2015/16 growing season.
DOI: 10.6084/m9.figshare.7941593
title: Canonical correlations among grapevine agronomic and processing characteristics

description: ABSTRACT. Canonical correlation analysis allows conclusions to be drawn about the occurrence and magnitude of associations between two groups of characteristics. This study estimated the magnitude of association and interdependence between two trait groups of clones of two varieties of Vitis vinifera grapes. The study was based on the mean data of eight characteristics from two experiments to test the performance of these clones: the first experiment provided data from seven clones of Cabernet Sauvignon, which evaluated in the northern San Joaquin Valley, California, United States, and the second data set was from six clones of the Chardonnay variety, which were evaluated in the Napa Valley, California, United States. The canonical correlations among the two varieties were significant, indicating that the two groups of characteristics were related or not independent. The quality and quantity of the raw material required for fine-wine production were inversely proportional and specific to each variety. For Cabernet Sauvignon, the high number of berries per bunch and high number of bunches per plant resulted in fruits with a high °Brix level and increased pH. For Chardonnay, the increase in the bunch weight and number of berries decreased the fruit pH.
DOI: 10.6084/m9.figshare.7941593.v1
title: Canonical correlations among grapevine agronomic and processing characteristics

description: ABSTRACT. Canonical correlation analysis allows conclusions to be drawn about the occurrence and magnitude of associations between two groups of characteristics. This study estimated the magnitude of association and interdependence between two trait groups of clones of two varieties of Vitis vinifera grapes. The study was based on the mean data of eight characteristics from two experiments to test the performance of these clones: the first experiment provided data from seven clones of Cabernet Sauvignon, which evaluated in the northern San Joaquin Valley, California, United States, and the second data set was from six clones of the Chardonnay variety, which were evaluated in the Napa Valley, California, United States. The canonical correlations among the two varieties were significant, indicating that the two groups of characteristics were related or not independent. The quality and quantity of the raw material required for fine-wine production were inversely proportional and specific to each variety. For Cabernet Sauvignon, the high number of berries per bunch and high number of bunches per plant resulted in fruits with a high °Brix level and increased pH. For Chardonnay, the increase in the bunch weight and number of berries decreased the fruit pH.
DOI: 10.6084/m9.figshare.8292455
title: Study of repeatability and phenotypical stabilization in kale using frequentist, Bayesian and bootstrap resampling approaches

description: ABSTRACT. The aim of this study was to obtain information for the genetic improvement of kale through repeatability and phenotypic stabilization studies and to compare methodologies that represent the reliability of the estimated parameters. Thirty-three half-sib progenies were evaluated in a randomized block design with three replicates and six plants per plot. Eight harvests were evaluated in terms of the yield of fresh leaves, number of shoots, number of leaves and average mass of leaves. Then, a phenotypic repeatability and stabilization study was performed, estimating the genetic parameters σ2a, σ²g, σ²e, and the coefficient of environmental variation and repeatability using the frequentist and Bayesian methodologies. To evaluate the reliability of these estimates, intervals were obtained using the frequentist, Bayesian and bootstrap methods. It was verified that the reliable selection of progenies of half-sib of kale can be achieved in four harvests that were realized between 95 and 170 days after planting. It was observed that the frequentist and Bayesian methodologies are better suited to obtain reliable estimates of the genetic parameters evaluated, as the last one provided smaller amplitudes for the obtained intervals. The bootstrap methodologies are not recommended for phenotypic repeatability and stabilization studies in kale.
DOI: 10.6084/m9.figshare.8292455.v1
title: Study of repeatability and phenotypical stabilization in kale using frequentist, Bayesian and bootstrap resampling approaches

description: ABSTRACT. The aim of this study was to obtain information for the genetic improvement of kale through repeatability and phenotypic stabilization studies and to compare methodologies that represent the reliability of the estimated parameters. Thirty-three half-sib progenies were evaluated in a randomized block design with three replicates and six plants per plot. Eight harvests were evaluated in terms of the yield of fresh leaves, number of shoots, number of leaves and average mass of leaves. Then, a phenotypic repeatability and stabilization study was performed, estimating the genetic parameters σ2a, σ²g, σ²e, and the coefficient of environmental variation and repeatability using the frequentist and Bayesian methodologies. To evaluate the reliability of these estimates, intervals were obtained using the frequentist, Bayesian and bootstrap methods. It was verified that the reliable selection of progenies of half-sib of kale can be achieved in four harvests that were realized between 95 and 170 days after planting. It was observed that the frequentist and Bayesian methodologies are better suited to obtain reliable estimates of the genetic parameters evaluated, as the last one provided smaller amplitudes for the obtained intervals. The bootstrap methodologies are not recommended for phenotypic repeatability and stabilization studies in kale.
DOI: 10.6084/m9.figshare.8292440.v1
title: Genetic parameters and agronomic characterization of elite barley accessions under irrigation in the Cerrado

description: ABSTRACT. There is a demand for barley cultivars that are suitable for the malt industry as well as genotypes that are stable and better adapted for irrigation in the Cerrado. This study aimed to estimate the genetic parameters by assessing 69 barley genotypes from different countries, from 2012 to 2014, under irrigation in the Cerrado. Six agronomic characteristics were assessed: grain yield, plumpness kernel, thousand seeds weight, plant height, degree of plant lodging and days to heading. Analysis of variance, cluster test and phenotypic, genotypic and environmental correlations were performed. Significant effects were observed for genotypes, years and the G x E interaction. High values of broad-sense heritability (&gt; 86%) were found for all the characteristics, which enabled direct selection. The Colombian accession MCU363PI402112 stood out for its agronomic characteristics. Genotype selection based on the phenotypic evaluations was possible due to their good experimental accuracy and precision. Precocious genotypes with high grain yields and homogeneous grain sizes were selected. Due to the environmental influence on the grain yield, additional studies concerning the components of yield in this environment are necessary to facilitate the selection of more productive genotypes.
DOI: 10.6084/m9.figshare.8292440
title: Genetic parameters and agronomic characterization of elite barley accessions under irrigation in the Cerrado

description: ABSTRACT. There is a demand for barley cultivars that are suitable for the malt industry as well as genotypes that are stable and better adapted for irrigation in the Cerrado. This study aimed to estimate the genetic parameters by assessing 69 barley genotypes from different countries, from 2012 to 2014, under irrigation in the Cerrado. Six agronomic characteristics were assessed: grain yield, plumpness kernel, thousand seeds weight, plant height, degree of plant lodging and days to heading. Analysis of variance, cluster test and phenotypic, genotypic and environmental correlations were performed. Significant effects were observed for genotypes, years and the G x E interaction. High values of broad-sense heritability (&gt; 86%) were found for all the characteristics, which enabled direct selection. The Colombian accession MCU363PI402112 stood out for its agronomic characteristics. Genotype selection based on the phenotypic evaluations was possible due to their good experimental accuracy and precision. Precocious genotypes with high grain yields and homogeneous grain sizes were selected. Due to the environmental influence on the grain yield, additional studies concerning the components of yield in this environment are necessary to facilitate the selection of more productive genotypes.
DOI: 10.6084/m9.figshare.9899912
title: Genetic linkage map and mapping of the locus of biological nitrogen fixation inefficiency in cowpea

description: ABSTRACT. The objectives of the present study were to construct a cowpea genetic map using the F2 population resulting from the cross IC-1 x BRS Marataoã, based on single nucleotide polymorphism (SNP) markers, and to map the cpi gene, with additional reference to introgression with the consensus map of species, aiming to identify markers for assisted selection to develop more efficient cultivars for BNF. The parents and 89 F2 plants were genotyped with 51,128 SNP markers, of which 910 polymorphic markers were used to construct the map. The results revealed 11 linkage groups, with an average of 82 markers per chromosome and average distance of 1.26 cM between markers. Recombination analysis of the SNPs indicated that markers 2_12850 and 2_00188, located in linkage group 11, flanked the cpi gene at a distance of 6.7 cM and 5.64 cM, respectively. The introgression of linkage group 11 with the cowpea reference map revealed short distances (from zero to 0.6 cM) for these markers, indicating a strong association with the cpi gene. The constructed map and cpi mapping provide basic information that can assist the genetic breeding of more efficient cowpea plants for BNF by marker-assisted selection.
DOI: 10.6084/m9.figshare.9899912.v1
title: Genetic linkage map and mapping of the locus of biological nitrogen fixation inefficiency in cowpea

description: ABSTRACT. The objectives of the present study were to construct a cowpea genetic map using the F2 population resulting from the cross IC-1 x BRS Marataoã, based on single nucleotide polymorphism (SNP) markers, and to map the cpi gene, with additional reference to introgression with the consensus map of species, aiming to identify markers for assisted selection to develop more efficient cultivars for BNF. The parents and 89 F2 plants were genotyped with 51,128 SNP markers, of which 910 polymorphic markers were used to construct the map. The results revealed 11 linkage groups, with an average of 82 markers per chromosome and average distance of 1.26 cM between markers. Recombination analysis of the SNPs indicated that markers 2_12850 and 2_00188, located in linkage group 11, flanked the cpi gene at a distance of 6.7 cM and 5.64 cM, respectively. The introgression of linkage group 11 with the cowpea reference map revealed short distances (from zero to 0.6 cM) for these markers, indicating a strong association with the cpi gene. The constructed map and cpi mapping provide basic information that can assist the genetic breeding of more efficient cowpea plants for BNF by marker-assisted selection.
DOI: 10.6084/m9.figshare.9900134
title: Glandular trichomes that mediate resistance to green peach aphid in tomato genotypes from the cross between S. galapagense and S. lycopersicum

description: ABSTRACT. The aim of this study was to verify the resistance of tomato genotypes (crossed with Solanum galapagense) to the green peach aphid, Myzus persicae, and the association of this resistance with glandular trichomes. Leaf trichomes were quantified for seven F2 genotypes of the BPX-486 population derived from crossing S. lycopersicum ‘TOM-684’ and S. galapagense accession ‘LA-1401’, for the commercial controls ‘TOM-584’ and ‘Santa Clara’, and for the accession ‘LA-1401’. After this evaluation, the genotypes were subjected to two nonpreference resistance tests of the green peach aphid in the laboratory, one with choice and the other without choice. Five genotypes (BPX-486-17, BPX-486-62, BPX-486-10, BPX-486-46, and BPX-486-08) and the accession LA-1401 exhibited a high density of type IV glandular trichomes and a lower mean number of nymphs and adults of M. persicae than two genotypes (BPX-486-313 and BPX-486-383) and the controls with a low density of glandular trichomes, in all the evaluations of both tests. Significant negative correlations between the density of type IV glandular trichomes of the tomato genotypes and the preference of M. persicae were found, which confirms the association between this type of glandular trichome and resistance to M. persicae in tomato genotypes.
DOI: 10.6084/m9.figshare.9900134.v1
title: Glandular trichomes that mediate resistance to green peach aphid in tomato genotypes from the cross between S. galapagense and S. lycopersicum

description: ABSTRACT. The aim of this study was to verify the resistance of tomato genotypes (crossed with Solanum galapagense) to the green peach aphid, Myzus persicae, and the association of this resistance with glandular trichomes. Leaf trichomes were quantified for seven F2 genotypes of the BPX-486 population derived from crossing S. lycopersicum ‘TOM-684’ and S. galapagense accession ‘LA-1401’, for the commercial controls ‘TOM-584’ and ‘Santa Clara’, and for the accession ‘LA-1401’. After this evaluation, the genotypes were subjected to two nonpreference resistance tests of the green peach aphid in the laboratory, one with choice and the other without choice. Five genotypes (BPX-486-17, BPX-486-62, BPX-486-10, BPX-486-46, and BPX-486-08) and the accession LA-1401 exhibited a high density of type IV glandular trichomes and a lower mean number of nymphs and adults of M. persicae than two genotypes (BPX-486-313 and BPX-486-383) and the controls with a low density of glandular trichomes, in all the evaluations of both tests. Significant negative correlations between the density of type IV glandular trichomes of the tomato genotypes and the preference of M. persicae were found, which confirms the association between this type of glandular trichome and resistance to M. persicae in tomato genotypes.
DOI: 10.6084/m9.figshare.9900128
title: Selection of interspecific Psidium spp. hybrids resistant to Meloidogyne enterolobii

description: ABSTRACT. Since 2001, the disease known as 'guava decline', resulting from the interaction between the phytonematode Meloidogyne enterolobii and the fungus Fusarium solanie, has caused direct and indirect economic losses to the entire guava production chain. Given the lack of sources of resistance in guava genotypes, interspecific hybrids of Psidium spp. were obtained for resistance to the nematode M. enterolobii. To classify the level of resistance of the interspecific hybrids, we evaluated the plant classification methodologies proposed by Oostenbrink (1966) and Moura and Régis (1987). Estimates of genetic parameters were obtained using the REML/BLUP approach. Interspecific hybrids resistant to M. enterolobii were selected that can be used as rootstocks or in new crosses for the development of the guava breeding program.
DOI: 10.6084/m9.figshare.9900128.v1
title: Selection of interspecific Psidium spp. hybrids resistant to Meloidogyne enterolobii

description: ABSTRACT. Since 2001, the disease known as 'guava decline', resulting from the interaction between the phytonematode Meloidogyne enterolobii and the fungus Fusarium solanie, has caused direct and indirect economic losses to the entire guava production chain. Given the lack of sources of resistance in guava genotypes, interspecific hybrids of Psidium spp. were obtained for resistance to the nematode M. enterolobii. To classify the level of resistance of the interspecific hybrids, we evaluated the plant classification methodologies proposed by Oostenbrink (1966) and Moura and Régis (1987). Estimates of genetic parameters were obtained using the REML/BLUP approach. Interspecific hybrids resistant to M. enterolobii were selected that can be used as rootstocks or in new crosses for the development of the guava breeding program.
DOI: 10.6084/m9.figshare.9900101
title: Selection of parents for low nitrogen stress through the combining ability of maize partially inbred lines

description: ABSTRACT. The objective of this work was to estimate the general combining ability of partially inbred lines under high and low nitrogen (N) conditions and to select promising lines to obtain high yields for both conditions. Fifty-five partially inbred S1 progenies were evaluated using the top-cross method, where the lines were crossed with two testers. The 110 top-cross hybrids were evaluated for grain yield during the off-season of 2012 at two sites in the Brazilian Midwest. Partial diallel analysis was performed with the adjusted means of each of the individual analyses of the top crosses. The combining ability of partially inbred lines and testers as well as their interaction with N levels, was estimated for each site. The coefficient of concordance among 15 partially inbred lines selected by the highest general combining ability estimates for each N level was 0.60. The S1 lines 39, 11, 41, 55, 38, 37, 6, 8, and 14 were selected at both N levels. This indicates that these lines can be used to identify ideal hybrids for growing in the off-season in the Brazilian Midwest.
DOI: 10.6084/m9.figshare.9900101.v1
title: Selection of parents for low nitrogen stress through the combining ability of maize partially inbred lines

description: ABSTRACT. The objective of this work was to estimate the general combining ability of partially inbred lines under high and low nitrogen (N) conditions and to select promising lines to obtain high yields for both conditions. Fifty-five partially inbred S1 progenies were evaluated using the top-cross method, where the lines were crossed with two testers. The 110 top-cross hybrids were evaluated for grain yield during the off-season of 2012 at two sites in the Brazilian Midwest. Partial diallel analysis was performed with the adjusted means of each of the individual analyses of the top crosses. The combining ability of partially inbred lines and testers as well as their interaction with N levels, was estimated for each site. The coefficient of concordance among 15 partially inbred lines selected by the highest general combining ability estimates for each N level was 0.60. The S1 lines 39, 11, 41, 55, 38, 37, 6, 8, and 14 were selected at both N levels. This indicates that these lines can be used to identify ideal hybrids for growing in the off-season in the Brazilian Midwest.
DOI: 10.6084/m9.figshare.9900071
title: Improvement of the specific detection of Xanthomonas phaseoli pv. manihotis based on the pthB gene

description: ABSTRACT. Modifications were made in the PCR conditions aiming to overcome the problem of non-amplification of the Xanthomonas phaseoli pv. manihotis (Xpm) fragment, using the primer pair XV / XK described in the literature. The objective of this study was to propose changes in the primers already described (XV / XK_MOD) and validate the use of these new primers in identifying Xpm. The validation procedure was carried out with the primer pair XV and XK_MOD, using different strains of Xpm, other plant pathogenic and endophytic bacteria genera and one isolate of X. phaseoli pv. passiflorae. As a control, additional reactions were conducted in multiplex with the universal primers for the 16S rRNA gene of the bacteria together with XV / XK and XV / XK_MOD. Using the forward primer (XV) described in the literature together with the modified reverse primer (XK_MOD), it was possible to achieve amplification from DNA extracted from in vitro cultures and from infected tissue, but no amplification was noticed for the primer pair described in the literature, confirming the effectiveness of the proposed modification.
DOI: 10.6084/m9.figshare.9900071.v1
title: Improvement of the specific detection of Xanthomonas phaseoli pv. manihotis based on the pthB gene

description: ABSTRACT. Modifications were made in the PCR conditions aiming to overcome the problem of non-amplification of the Xanthomonas phaseoli pv. manihotis (Xpm) fragment, using the primer pair XV / XK described in the literature. The objective of this study was to propose changes in the primers already described (XV / XK_MOD) and validate the use of these new primers in identifying Xpm. The validation procedure was carried out with the primer pair XV and XK_MOD, using different strains of Xpm, other plant pathogenic and endophytic bacteria genera and one isolate of X. phaseoli pv. passiflorae. As a control, additional reactions were conducted in multiplex with the universal primers for the 16S rRNA gene of the bacteria together with XV / XK and XV / XK_MOD. Using the forward primer (XV) described in the literature together with the modified reverse primer (XK_MOD), it was possible to achieve amplification from DNA extracted from in vitro cultures and from infected tissue, but no amplification was noticed for the primer pair described in the literature, confirming the effectiveness of the proposed modification.
DOI: 10.6084/m9.figshare.9900113
title: Expression of genes related to soil flooding tolerance in soybeans

description: ABSTRACT. The flooded environment brings about injuries to soybeans that vary depending on the adaptation ability of the genotype. Oxygen deprivation promotes the induction of the expression of genes related to glycolysis and fermentation pathways to maintain energy metabolism and, in addition to reducing-power consuming processes, act in the formation of adaptive structures and the maintenance of the redox status of the plant. The aim of this work was to evaluate the relative expression of genes related to soil flooding response in two contrasting soybean cultivars. Soybean plants of the sensitive (BRS 154) and tolerant (I27) cultivars at the V1 development stage were submitted to the flooding and control conditions (without flooding) for 0, 24, 48, and 96 hours. The relative expression of genes associated with flooding, including enolase (ENO), alcohol dehydrogenase 1 (ADH1), alanine aminotransferase 2 (ALAT2), hemoglobin 1 (GLB1), LOB41 domain-containing protein (LBD41), xyloglucan endotransglycosylase (XETP) and ascorbate peroxidase (APX2), was evaluated by means of RT-qPCR. The relative expression, in general, increased with flooding, especially in the root tissue. Cultivar I27 responded positively as observed by the expression of the maintenance genes of energy metabolism, structural changes and detoxification, suggesting the presence of three tolerance mechanisms in the flooding response.