cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17744852
title: Airway immune profiles and therapeutic implications of IGF1 in eosinophilic granulomatosis with polyangiitis

description: This repository archives the processed datasets and custom analysis code associated with the manuscript "Airway immune profiles and therapeutic implications of IGF1 in eosinophilic granulomatosis with polyangiitis". These resources are provided to support transparency, reproducibility, and re-use of the analyses presented in the article.

The archive includes:



Seurat object (combined_annotated.RDS): Represents the fully processed single-cell dataset, containing major cell-type annotations, complete metadata, normalised expression matrices, and dimensionality reduction embeddings (UMAP/t-SNE).

Source Code (EGPA_scRNA-main.zip): Contains the custom R scripts and workflows used for data processing, statistical analysis, and figure generation as detailed in the manuscript.


All datasets are provided in their final curated form exactly as used in the publication. No additional preprocessing is required. Detailed descriptions of sample information, analytical workflows, and experimental procedures can be found in the Methods section of the manuscript.

Users are free to reuse the data and code for research and educational purposes under the terms of the licence associated with this deposit. Please cite the original article when using any part of this dataset.
DOI: 10.5281/zenodo.17744851
title: Airway immune profiles and therapeutic implications of IGF1 in eosinophilic granulomatosis with polyangiitis

description: This repository archives the processed datasets and custom analysis code associated with the manuscript "Airway immune profiles and therapeutic implications of IGF1 in eosinophilic granulomatosis with polyangiitis". These resources are provided to support transparency, reproducibility, and re-use of the analyses presented in the article.

The archive includes:



Seurat object (combined_annotated.RDS): Represents the fully processed single-cell dataset, containing major cell-type annotations, complete metadata, normalised expression matrices, and dimensionality reduction embeddings (UMAP/t-SNE).

Source Code (EGPA_scRNA-main.zip): Contains the custom R scripts and workflows used for data processing, statistical analysis, and figure generation as detailed in the manuscript.


All datasets are provided in their final curated form exactly as used in the publication. No additional preprocessing is required. Detailed descriptions of sample information, analytical workflows, and experimental procedures can be found in the Methods section of the manuscript.

Users are free to reuse the data and code for research and educational purposes under the terms of the licence associated with this deposit. Please cite the original article when using any part of this dataset.
DOI: 10.5281/zenodo.14825960
title: CBASS MarHE workshop December, 2024

description: Short-term acute thermal stress assays using the Coral Bleacing Automated Stress System (CBASS) were used to assay standardized temperature tolerances (ED50s) of Pocillopora verrucosa, Porites sp., and Diploastrea sp. (Voolstra et al. 2020; Evensen et al. 2023; Voolstra et al. 2025; Iakovleva et al. 2024). P. verrucosa and Porites sp. samples were collected at 2 depths (shallow ≤ 4 m and deep ≥ 8m) to assess putative ED50 differences with depth. Diploastrea sp. samples were collected at depths ≥ 7.5m. In addition, benthic reef surveys were conducted following a previously published protocol (Colin et al. 2024) using CoralNet (Beijbom et al. 2015). Benthic reef survey data is available at https://coralnet.ucsd.edu/source/5984/. 

A pilot CBASS run using samples from P. verrucosa and Porites sp. was condcuted to assess optimal CBASS heat-hold temperatures.

Files:

CBASSED50_CBASS_PocPorDip.qmd - R script

PocPorDip_MarHE_EDs_boxplot.pdf - ED50 box plot for species and condition

PocPorDip_MarHE_EDsdf.csv - colony-specific ED5, ED50, ED95

PocPorDip_MarHE_PAM_infile.xlsx - PAM Fv/Fm values; for details refer to Iakovleva et al. (2024)

PocPorDip_MarHE_prelim_temprespcurve.pdf - colony-specific log-logistic temperature-Fv/Fm dose-response curves

PocPorDip_MarHE_summaryEDs_df.csv - ED5, ED50, ED95 with SD, SE, CI for all species/condition groups

PocPorDip_MarHE_temprespcurve.pdf - species/condition group log-logistic temperature-Fv/Fm dose-response curves with indicated ED5, ED50, ED95 and 95% CI

PocPorDip_MarHE_CollectionDepth.xlsx - Depth of sampled colonies

PocPorDip_MarHE_UW_colony.zip - Underwater photos of sampled coral colonies

Pilot_PocPor_MarHE.zip - Pilot CBASS run to inform CBASS heat-hold temperatures.

MarHE-CBASS-workshop_BenthicSurveyData.xlsx - CoralNet annotations file
DOI: 10.5281/zenodo.14825961
title: CBASS MarHE workshop December, 2024

description: Short-term acute thermal stress assays using the Coral Bleacing Automated Stress System (CBASS) were used to assay standardized temperature tolerances (ED50s) of Pocillopora verrucosa, Porites sp., and Diploastrea sp. (Voolstra et al. 2020; Evensen et al. 2023; Voolstra et al. 2025; Iakovleva et al. 2024). P. verrucosa and Porites sp. samples were collected at 2 depths (shallow ≤ 4 m and deep ≥ 8m) to assess putative ED50 differences with depth. Diploastrea sp. samples were collected at depths ≥ 7.5m. In addition, benthic reef surveys were conducted following a previously published protocol (Colin et al. 2024) using CoralNet (Beijbom et al. 2015). Benthic reef survey data is available at https://coralnet.ucsd.edu/source/5984/. 

A pilot CBASS run using samples from P. verrucosa and Porites sp. was condcuted to assess optimal CBASS heat-hold temperatures.

Files:

CBASSED50_CBASS_PocPorDip.qmd - R script

PocPorDip_MarHE_EDs_boxplot.pdf - ED50 box plot for species and condition

PocPorDip_MarHE_EDsdf.csv - colony-specific ED5, ED50, ED95

PocPorDip_MarHE_PAM_infile.xlsx - PAM Fv/Fm values; for details refer to Iakovleva et al. (2024)

PocPorDip_MarHE_prelim_temprespcurve.pdf - colony-specific log-logistic temperature-Fv/Fm dose-response curves

PocPorDip_MarHE_summaryEDs_df.csv - ED5, ED50, ED95 with SD, SE, CI for all species/condition groups

PocPorDip_MarHE_temprespcurve.pdf - species/condition group log-logistic temperature-Fv/Fm dose-response curves with indicated ED5, ED50, ED95 and 95% CI

PocPorDip_MarHE_CollectionDepth.xlsx - Depth of sampled colonies

PocPorDip_MarHE_UW_colony.zip - Underwater photos of sampled coral colonies

Pilot_PocPor_MarHE.zip - Pilot CBASS run to inform CBASS heat-hold temperatures.

MarHE-CBASS-workshop_BenthicSurveyData.xlsx - CoralNet annotations file
DOI: 10.15468/dl.qy3zhb
title: Occurrence Download

description: A dataset containing 9814 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmanthus illinoensis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9814 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015676-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17762628
title: Performance Evaluation of Industrial Waste-Modified Cold Mix Asphalt  for Pothole Repairs

description: This dataset contains supplementary materials for the manuscript titled “Performance Evaluation of Industrial Waste-Modified Cold Mix Asphalt for Pothole Repairs.” It includes detailed mix design data, material properties, industrial-waste modifier proportions, experimental test results, and supporting tables used in the study. The dataset is provided to ensure research transparency and to support researchers working on cold mix asphalt, pothole repair techniques, and sustainable pavement materials.
DOI: 10.5281/zenodo.17762629
title: Performance Evaluation of Industrial Waste-Modified Cold Mix Asphalt  for Pothole Repairs

description: This dataset contains supplementary materials for the manuscript titled “Performance Evaluation of Industrial Waste-Modified Cold Mix Asphalt for Pothole Repairs.” It includes detailed mix design data, material properties, industrial-waste modifier proportions, experimental test results, and supporting tables used in the study. The dataset is provided to ensure research transparency and to support researchers working on cold mix asphalt, pothole repair techniques, and sustainable pavement materials.
DOI: 10.5281/zenodo.17762718
title: Data Set for Examining the Effect of Social Media Marketing on Green Purchase Intention: The Roles of Trust, Value, and Information Usefulness

description: This dataset includes survey results on the relationship between Social Media Marketing Activities (SMMA), Green Perceived Value (GPV), Green Trust (GT), Perceptions of Information Usefulness (PIU), and Eco-friendly Purchase Intention (EPI) in the context of eco-friendly local skincare products. This data has been collected since August 2025 as part of research on the factors influencing consumer purchase intention toward environmentally friendly local skincare products. The survey was conducted using an online questionnaire with a 1-5 Likert scale. The number of respondents is 350 people, who are users of environmentally friendly local Indonesian skincare. The dataset contains information about the respondents and indicators for each variable.
DOI: 10.5281/zenodo.17762719
title: Data Set for Examining the Effect of Social Media Marketing on Green Purchase Intention: The Roles of Trust, Value, and Information Usefulness

description: This dataset includes survey results on the relationship between Social Media Marketing Activities (SMMA), Green Perceived Value (GPV), Green Trust (GT), Perceptions of Information Usefulness (PIU), and Eco-friendly Purchase Intention (EPI) in the context of eco-friendly local skincare products. This data has been collected since August 2025 as part of research on the factors influencing consumer purchase intention toward environmentally friendly local skincare products. The survey was conducted using an online questionnaire with a 1-5 Likert scale. The number of respondents is 350 people, who are users of environmentally friendly local Indonesian skincare. The dataset contains information about the respondents and indicators for each variable.
DOI: 10.15468/dl.w6q27z
title: Occurrence Download

description: A dataset containing 8852 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Descurainia pinnata",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8852 records from 216 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015678-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdt2df
title: Occurrence Download

description: A dataset containing 235512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Engraulis"
 ]
}

 The dataset includes 235512 records from 332 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015643-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fskf7
title: Occurrence Download

description: A dataset containing 894216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mareca strepera, Megaceryle alcyon)",
 "Country is Canada",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON ((-84.76571 41.22334, -58.93394 41.22334, -58.93394 49.85477, -84.76571 49.85477, -84.76571 41.22334))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 894216 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015664-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17762590
title: Luccia crop yields maps SSP126
DOI: 10.5281/zenodo.17762591
title: Luccia crop yields maps SSP126
DOI: 10.15468/dl.ddv7fm
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Branta canadensis",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is True",
 "Geometry POLYGON ((-2.565 53.744, -2.540 53.702, -2.516 53.692, -2.532 53.665, -2.520 53.630, -2.473 53.617, -2.439 53.646, -2.422 53.624, -2.370 53.632, -2.374 53.687, -2.434 53.719, -2.446 53.767, -2.466 53.781, -2.565 53.744))"
 ]
}

 The dataset includes 29 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015683-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkr5qa
title: Occurrence Download

description: A dataset containing 175879 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to -20.914722",
 "DecimalLatitude is less than or equal to -15.914722",
 "DecimalLongitude is greater than or equal to -50.0",
 "DecimalLongitude is less than or equal to -45.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 175879 records from 278 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015663-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17763095
title: Dataset and supplementary materials for "Cognitive status and processing speed in Indian older adults: a cross-sectional analysis benchmarked against European normative data"

description: This record contains de-identified participant-level data and supplementary materials for a cross-sectional study of cognition and processing speed in Indian older adults. Global cognition was assessed with the Montreal Cognitive Assessment (MoCA) and processing speed with a choice reaction time (CRT) task based on the Deary–Liewald paradigm, implemented via the PsyToolkit web platform.

The dataset includes one row per participant (n = 50) with variables for age, sex, education, living environment (community vs institutionalised), MoCA total score, CRT mean and variability, and derived measures (log10-transformed CRT, CRT z-scores, and education-adjusted MoCA).

Supplementary tables provide multivariable regression results, benchmarking of Indian performance against European normative data, and a summary of European MoCA/CRT normative studies. A supplementary figure illustrates the MoCA administration and CRT task set-up.

These data accompany the manuscript “Cognitive status and processing speed in Indian older adults: a cross-sectional analysis benchmarked against European normative data”, submitted to European Geriatric Medicine.
DOI: 10.5281/zenodo.17763096
title: Dataset and supplementary materials for "Cognitive status and processing speed in Indian older adults: a cross-sectional analysis benchmarked against European normative data"

description: This record contains de-identified participant-level data and supplementary materials for a cross-sectional study of cognition and processing speed in Indian older adults. Global cognition was assessed with the Montreal Cognitive Assessment (MoCA) and processing speed with a choice reaction time (CRT) task based on the Deary–Liewald paradigm, implemented via the PsyToolkit web platform.

The dataset includes one row per participant (n = 50) with variables for age, sex, education, living environment (community vs institutionalised), MoCA total score, CRT mean and variability, and derived measures (log10-transformed CRT, CRT z-scores, and education-adjusted MoCA).

Supplementary tables provide multivariable regression results, benchmarking of Indian performance against European normative data, and a summary of European MoCA/CRT normative studies. A supplementary figure illustrates the MoCA administration and CRT task set-up.

These data accompany the manuscript “Cognitive status and processing speed in Indian older adults: a cross-sectional analysis benchmarked against European normative data”, submitted to European Geriatric Medicine.
DOI: 10.6084/m9.figshare.30742175
title: Quality of Life SPSS Dataset

description: Quality of Life SPSS Dataset
DOI: 10.6084/m9.figshare.30742175.v1
title: Quality of Life SPSS Dataset

description: Quality of Life SPSS Dataset
DOI: 10.13140/rg.2.2.34848.24328
title: THE UNIVERSITY OF THE CORDILLERAS NATIONAL SERVICE TRAINING PROGRAM (NSTP) CITY OF BAGUIO THE NSTP GROUP HANDBOOK
DOI: 10.15468/dl.k7q3re
title: Occurrence Download

description: A dataset containing 311936 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Spain",
 "DatasetKey is one of (VIT Herbarium - Vascular Plants (The Natural History Museum of Alava), CSIC-Real Jardín Botánico-Colección de Plantas Vasculares (MA), DIBA-Parc Natural del Montseny)",
 "Geometry POLYGON((-1.77009 43.54615,-8.93881 44.2218,-10.86885 43.22554,-11.19972 41.47329,-10.53799 38.38732,-9.76597 36.63782,-7.1742 35.97123,-4.9133 36.14954,-2.43181 36.28301,0.65625 37.5177,5.61922 38.6462,5.28835 41.39061,3.79946 42.33515,-1.77009 43.54615))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 311936 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015681-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4a34k
title: Occurrence Download

description: A dataset containing 1659 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bertholletia excelsa"
 ]
}

 The dataset includes 1659 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015685-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hhjdr
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Korthalsia lanceolata"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015686-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rcngw6
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sabethes belisarioi"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015687-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17622011
title: Turkish word2vec embeddings trained on OpenSubtitles Part 1

description: This dataset contains the subs2vec embeddings for Turkish, as presented in https://zenodo.org/records/17243814. The embeddings were trained on large-scale subtitle corpora and represent semantic vector spaces derived from naturalistic language use in films and television from the OpenSubtitles 2018 datasets: https://opus.nlpl.eu/OpenSubtitles/corpus/version/OpenSubtitles. 

For this language, we provide all embedding variants explored in the study. Specifically, the dataset includes vectors generated under different combinations of:



Dimensionality: multiple vector sizes (e.g., 100, 200, 300, …)

Window size: varying context windows (e.g., 2, 5, 10, …)

Each file corresponds to a unique configuration (dimension × window size). 


Each file contains the vocabulary for that language (column 1) and then the embedding values (columns 2 through dimension size + 1). 

If you use this dataset, please cite:



Manuscript: https://doi.org/10.5281/zenodo.17243812 

Data: This Zenodo dataset (using the DOI provided here)
DOI: 10.5281/zenodo.17622010
title: Turkish word2vec embeddings trained on OpenSubtitles Part 1

description: This dataset contains the subs2vec embeddings for Turkish, as presented in https://zenodo.org/records/17243814. The embeddings were trained on large-scale subtitle corpora and represent semantic vector spaces derived from naturalistic language use in films and television from the OpenSubtitles 2018 datasets: https://opus.nlpl.eu/OpenSubtitles/corpus/version/OpenSubtitles. 

For this language, we provide all embedding variants explored in the study. Specifically, the dataset includes vectors generated under different combinations of:



Dimensionality: multiple vector sizes (e.g., 100, 200, 300, …)

Window size: varying context windows (e.g., 2, 5, 10, …)

Each file corresponds to a unique configuration (dimension × window size). 


Each file contains the vocabulary for that language (column 1) and then the embedding values (columns 2 through dimension size + 1). 

If you use this dataset, please cite:



Manuscript: https://doi.org/10.5281/zenodo.17243812 

Data: This Zenodo dataset (using the DOI provided here)
DOI: 10.15468/dl.s9xxz9
title: Occurrence Download

description: A dataset containing 1668 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea leprosula"
 ]
}

 The dataset includes 1668 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015688-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hzq8un
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "GadmGid is COL.28.61_2",
 "TaxonKey is Arecaceae"
 ]
}

 The dataset includes 48 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015691-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k776yj
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachemys terrapen"
 ]
}

 The dataset includes 269 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015692-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.