cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jb2kts
title: Occurrence Download

description: A dataset containing 195078 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepomis gibbosus (Linnaeus, 1758)"
 ]
}

 The dataset includes 195078 records from 566 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064691-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xbsxk
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orophea harmandiana Pierre"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064767-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.da8t2k
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ochrosia citrodora K.Schum. & Lauterb."
 ]
}

 The dataset includes 138 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064768-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jkmnw
title: Occurrence Download

description: A dataset containing 187677 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cinclus mexicanus Swainson, 1827"
 ]
}

 The dataset includes 187677 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064693-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqsr6q
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza lancifolia Ridl."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064769-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kuctrn
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orophea hastata King"
 ]
}

 The dataset includes 23 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064770-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kyfhh
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ochrosia coccinea (Teijsm. & Binn.) Miq."
 ]
}

 The dataset includes 111 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064771-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcfw56
title: Occurrence Download

description: A dataset containing 10844 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tagetes erecta L."
 ]
}

 The dataset includes 10844 records from 577 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064772-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5urrne
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza lancilimba Merr."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064773-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gf2ag
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orophea hexandra Blume"
 ]
}

 The dataset includes 87 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064775-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jhwn98
title: Occurrence Download

description: A dataset containing 385 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Sweden, Estonia, Switzerland, Austria, Italy, Ukraine, Bulgaria, Greece)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scapania calcicola (Arnell & J.Perss.) Ingham"
 ]
}

 The dataset includes 385 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064774-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ajrvrj
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ochrosia compta K.Schum."
 ]
}

 The dataset includes 287 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064776-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6sgsz2
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza laoshanica H.S.Lo"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064778-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8fkquq
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orophea hirsuta King"
 ]
}

 The dataset includes 56 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064780-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcfk38
title: Occurrence Download

description: A dataset containing 720 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ochrosia elliptica Labill."
 ]
}

 The dataset includes 720 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064782-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.db5k2m
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza larseniorum Schanzer"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064783-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xd7t6
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orophea katschallica Kurz"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064784-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5km9q
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza lawrenceana King & Prain"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064786-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6shy47
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ochrosia fatuhivensis Fosberg & Sachet"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064788-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kaehkd
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orophea kerrii Kessler"
 ]
}

 The dataset includes 34 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064787-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6ze2g
title: Occurrence Download

description: A dataset containing 43451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is one of (Mexico, United States of America, Guatemala, Nicaragua, Honduras, El Salvador, Belize)",
 "Geometry POLYGON((-119 11,-83 11,-83 36,-119 36,-119 11))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ericaceae"
 ]
}

 The dataset includes 43451 records from 247 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064785-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8070913
title: Fore wings of honey bees (Apis mellifera) from Jammu and Kashmir, India

description: The dataset consists of 350 honey bee (Apis mellifera) fore wing images, which represent 175 workers and 10 locations in Jammu and Kashmir, India. The wing images are compressed in IN-wing-images.zip. Raw coordinates of 19 landmarks marked on the wings are in file IN-raw-coordinates.csv. Additional data, including geographic coordinates and resolution, is saved in the file IN-data.csv.
DOI: 10.6084/m9.figshare.14775438
title: Additional file 6 of An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants

description: Additional file 5: Table S29. Taxonomic classification and counts of predicted hydrogenases and enzymes associated with methanogenesis, acetogenesis, fumarate reduction, sulfidogenesis and nitrate ammonification.
DOI: 10.6084/m9.figshare.20443498
title: Additional file 8 of 1029 genomes of self-declared healthy individuals from India reveal prevalent and clinically relevant cardiac ion channelopathy variants

description: Additional file 8: Allele frequencies of pathogenic and likely pathogenic cardiac channelopathy variants across different genomic datasets.
DOI: 10.6084/m9.figshare.12154119
title: Additional file 1 of Do halophytes and glycophytes differ in their interactions with arbuscular mycorrhizal fungi under salt stress? A meta-analysis

description: Additional file 1. Raw data and effect sizes in the independent studies in this meta-analysis.
DOI: 10.6084/m9.figshare.14775432
title: Additional file 5 of An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants

description: Additional file 4: Table S10. Comparison of the levels of COG functional modules of the microbiome across the ruminant GIT regions. Table S11. Comparison of the levels of KO functional modules of the microbiome across the ruminant GIT regions. Table S12. Comparison of the levels of CAZyme functional modules of the microbiome across the ruminant GIT regions. Table S13. Quality information and assessment of 28,543 MAGs produced in this study. Table S14. Bins that aligned to fungal or protozoan genomes from GenBank. Table S15. Quality information for 310,661 viral contigs generated from our dataset. Table S16. Genomic statistics for 10,373 nonredundant MAGs from our dataset. Table S17. Taxonomic classification and genome properties of 367 MAGs aggregated in Module 47 of Fig. 4. Table S18. Taxonomic information for the top 10 Hub genomes in each GIT region. Table S19. The 41,369 bacterial, 2,163 archaeal, 2,647 fungal and 468 protozoan reference genomes from GenBank used in this study. Table S20. Collection of 7,052 previously published ruminant microbial genomes. Table S21. Quality assessment and taxonomic classification of 8,745 uncultured candidate bacterial and archaeal species. Table S22. Read classification rate of 635 published metagenomic samples and 370 GIT samples in this study using GenBank, RMG and USG. Table S23. The 850,749 CAZyme-predicted proteins from the 8,745 USGs listed in Additional file 4: Table S18. Table S24. The 12,578 predicted PULs and taxonomic classification of 1,772 USGs. Table S25. Number and characteristics of biosynthetic gene clusters identified in the USGs. Table S26. Comparison of GPs in the genomes assigned to the phylum Proteobacteria. Table S27. Taxonomic classification and distribution of 160 archaeal MAGs among the GIT regions. Table S28. Taxonomic classification and counts of predicted hydrogenases among the 6,152 MAGs.
DOI: 10.6084/m9.figshare.14775429
title: Additional file 4 of An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants

description: Additional file 3: Table S9. Differences in functional categories among the GIT regions.
DOI: 10.6084/m9.figshare.14775438.v1
title: Additional file 6 of An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants

description: Additional file 5: Table S29. Taxonomic classification and counts of predicted hydrogenases and enzymes associated with methanogenesis, acetogenesis, fumarate reduction, sulfidogenesis and nitrate ammonification.
DOI: 10.6084/m9.figshare.20443498.v1
title: Additional file 8 of 1029 genomes of self-declared healthy individuals from India reveal prevalent and clinically relevant cardiac ion channelopathy variants

description: Additional file 8: Allele frequencies of pathogenic and likely pathogenic cardiac channelopathy variants across different genomic datasets.
DOI: 10.6084/m9.figshare.13727596
title: Additional file 2 of Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility

description: Additional file 2: Supplementary Tables. Table S1. Independent common variants associated with BCC in GWAS analysis at P-value &lt; 5E-8. Table S2. Common variants identified by GCTA-COJO analysis of BCC at P &lt; 5E-8 . Table S3. Quantification of the correlation of eQTL effects (r̂ ) between blood and skin samples. Table S4. BCC-associated CpG methylation sites via SMR analysis of the GWAS meta-analysis and mQTL data. Table S5. Mapping the BCC-associated CpG methylation sites to the BCC-associated genes via SMR analysis using the eQTLGen eQTL data. Table S6. BCC GWAS-FI network Pathway Analysis. Table S7. BCC GWAS-FI network GO-Process Analysis. Table S8. BCC SMR-FI network Pathway Analysis. Table S9. BCC SMR-FI network GO-Process Analysis. Table S10. Pubmed search of SMR-HEIDI candidate genes biological processes. Table S11. BCC-associated genes identified via SMR analysis using GTEx and eQTLGen eQTL data. Table S12. Pearson’s correlation of GTEx and eQTLGen eQTL data. This excel file contains 11 supplementary tables, related to the main text.
DOI: 10.6084/m9.figshare.13727596.v1
title: Additional file 2 of Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility

description: Additional file 2: Supplementary Tables. Table S1. Independent common variants associated with BCC in GWAS analysis at P-value &lt; 5E-8. Table S2. Common variants identified by GCTA-COJO analysis of BCC at P &lt; 5E-8 . Table S3. Quantification of the correlation of eQTL effects (r̂ ) between blood and skin samples. Table S4. BCC-associated CpG methylation sites via SMR analysis of the GWAS meta-analysis and mQTL data. Table S5. Mapping the BCC-associated CpG methylation sites to the BCC-associated genes via SMR analysis using the eQTLGen eQTL data. Table S6. BCC GWAS-FI network Pathway Analysis. Table S7. BCC GWAS-FI network GO-Process Analysis. Table S8. BCC SMR-FI network Pathway Analysis. Table S9. BCC SMR-FI network GO-Process Analysis. Table S10. Pubmed search of SMR-HEIDI candidate genes biological processes. Table S11. BCC-associated genes identified via SMR analysis using GTEx and eQTLGen eQTL data. Table S12. Pearson’s correlation of GTEx and eQTLGen eQTL data. This excel file contains 11 supplementary tables, related to the main text.
DOI: 10.6084/m9.figshare.13727687
title: Additional file 2 of Genomics Analyses Reveal Unique Classification, Population Structure and Novel Allele of Neo-Tetraploid Rice

description: Additional file 2: Table S1. Summary of quantity and quality of genome re-sequencing data. Table S2. Genome coverage of sequencing reads to MSU7 and R498 reference genome. Table S3. Number of genomic variations against MSU7 and R498 reference genome. Table S4. Number of genomic variations from different effect levels against MSU7 reference genome. Table S5. Variation density of different types of autotetraploid rice against MSU7 and R498 reference genome. Table S6. Cross-validation error of different k values in ADMIXTURE analysis. Table S7. GO enrichment analysis of zero-diversity genes in tetraploid rice population. Table S8. Annotation of 717 agronomically important genes that previously reported in diploid rice. Table S9. Haplotype patterns of 717 agronomically important genes in autotetraploid rice (ATR) and neo-tetraploid rice (NTR) lines. Table S10. Neo-tetraploid rice (NTR) specific haplotypes compared with 30 diploid rice cultivars. Table S11. Validation of neo-tetraploid rice specific variation in HSP101–1 using Sanger sequencing. Table S12. The genomic variations in 3024 diploid rice accessions of HSP101 from rice functional genomics and breeding (RFGB) database. Table S13. The genomic variations in diploid rice accessions of HSP101 from RiceVarMap2 database. Table S14. Two target-site primers for NTR specific gene, HSP101–1. Table S15. Mutations of HSP101–1 knockout plants.
DOI: 10.25934/pr00009129
title: Cost-effectiveness analysis of atezolizumab plus bevacizumab in unresectable hepatocellular carcinoma: subgroups analyses

description: Unresectable (cannot be removed by surgery) hepatocellular carcinoma (uHCC) is an advanced stage of hepatocellular carcinoma (HCC) in which tumors invade the portal veins, veins that are responsible for supplying oxygen and nutrients to liver and/or other organs. The 5-year survival rate is nearly 19% in HCC, but only 2% is advanced stage of HCC. Sorafenib is drug therapy that works by blocking the abnormal proteins that cause cancer cells to multiply. Although sorafenib has been the standard systemic therapy in uHCC since 2008, the 5-year survival rate for uHCC with sorafenib treatment increases variously across countries, 5% in China, 7.7% in Japan and 10% in Poland. 
Two drugs called Atezolizumab (a checkpoint inhibitor that blocks proteins that stop the immune system from attacking cancer cells) and Bevacizumab (a targeted drug therapy that prevents the growth of tumor tissues) are also used in treating HCC. Recently, atezolizumab plus bevacizumab (Atezo-bev) combination treatment has been shown to extend survival and delay disease progression compared with sorafenib in uHCC patients. However, Atezo-bev was found not to be cost-effective compared with sorafenib from the US payer perspective. Quality-adjusted life years (QALYs) are used as a measure of a person’s quality of life -  1 QALY is equal to 1 year of life in perfect health. 
Atezo-bez treatment combination has been found to increase patients QALYs to a greater extent than sorafenib, but the incremental cost-effective ratio (ICER) of Atezo-bez (calculated from the cost of the two treatments and the increase in QALYs) was too high for payers compared to sorafenib.

Our study intends to evaluate the cost-effectiveness of atezolizumab plus bevacizumab compared with sorafenib in subgroups of unresectable hepatocellular carcinoma. We will derive efficacy, utility and safety data from the IMbrave150 trial and collect cost of atezolizumab, bevacizumab, sorafenib, subsequent treatments in post-progression and management of severe adverse events from Taiwan National Health Insurance.
DOI: 10.6084/m9.figshare.14252005.v1
title: Additional file 3 of Reorganization of the 3D chromatin architecture of rice genomes during heat stress

description: Additional file 3: Table S2 List of TADs identified in normal and HS conditions in Nip and 93-11, respectively.
DOI: 10.6084/m9.figshare.13727420
title: Additional file 5 of Identification of QTL regions and candidate genes for growth and feed efficiency in broilers

description: Additional file 5: Table S5. Phenotypes for individual broilers.