cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7200653
title: Comparison of physiological responses to high temperatures in juvenile and adult Cape Rockjumpers <i>Chaetops frenatus</i><sup>*</sup>

description: Concerns about climate change have led to an increase in studies on physiological mechanisms birds possess to cope with increasing temperatures. For range-restricted species such as Cape Rockjumpers <i>Chaetops frenatus</i>, whose population declines are correlated with habitat warming, we identified juvenile physiological responses to high temperature as a potential gap in current knowledge. We compared metabolic rate, evaporative water loss, evaporative cooling efficiency (calculated from evaporative water loss and resting metabolic rate) and body temperature in juveniles (<i>n</i> = 5) with adult birds (<i>n</i> = 10) to a ramped temperature profile (30–42 °C). Although juveniles exhibited no significant difference in cooling efficiency, they had higher evaporative water loss, resting metabolic rate and body temperature. This suggests that while juvenile birds show similar abilities to dissipate metabolic heat evaporatively, they face higher overall water and energy demands, and thus higher thermoregulatory costs in maintaining body temperature as overall temperatures continue to increase.
DOI: 10.7284/133611
title: INS (Inertial Navigation System) data collected during research cruise SR1902 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200650
title: Growth in three Karoo shrub species under various grazing treatments: the tracking of marked individuals over 25 years

description: Growth studies of long-lived shrubs are uncommon. In semi-arid rangelands, livestock and wildlife grazing influence growth processes and may interact with changing climate. Tierberg-LTER, excluded from livestock since 1987, and two adjacent ranches allowed for a comparative growth study of three shrub species (<i>Osteospermum sinuatum</i> – palatable, <i>Pteronia empetrifolia</i> – moderately palatable, and <i>P. pallens</i> – unpalatable) across contrasting present ungulate herbivory (none in exclosures, wildlife only, or livestock and wildlife combined) and past livestock herbivory (moderate and overgrazed). Marked individuals were measured at irregular intervals over 25 years. Stem basal diameter (mm), height (m) and two canopy diameters (m) were measured at the onset of the study and in 2014. Mean basal diameter growth (mm y<sup>−1</sup>) varied between species and treatments. Change in mean attribute values was influenced by interactions with grazing history and treatments. Some historical and grazing treatments had a negative effect on the palatable <i>O. sinuatum</i> and no significant effect on moderately palatable <i>P. empetrifolia</i> or unpalatable <i>P. pallens</i>. The age of the originally marked individuals are unknown but &gt;70% of these individuals survived over the 25-year period. Our results support previous findings that dwarf shrubs in deserts are slow growing and long lived, and that grazing regime affects plant growth.
DOI: 10.6084/m9.figshare.7200650.v2
title: Growth in three Karoo shrub species under various grazing treatments: the tracking of marked individuals over 25 years

description: Growth studies of long-lived shrubs are uncommon. In semi-arid rangelands, livestock and wildlife grazing influence growth processes and may interact with changing climate. Tierberg-LTER, excluded from livestock since 1987, and two adjacent ranches allowed for a comparative growth study of three shrub species (<i>Osteospermum sinuatum</i> – palatable, <i>Pteronia empetrifolia</i> – moderately palatable, and <i>P. pallens</i> – unpalatable) across contrasting present ungulate herbivory (none in exclosures, wildlife only, or livestock and wildlife combined) and past livestock herbivory (moderate and overgrazed). Marked individuals were measured at irregular intervals over 25 years. Stem basal diameter (mm), height (m) and two canopy diameters (m) were measured at the onset of the study and in 2014. Mean basal diameter growth (mm y<sup>−1</sup>) varied between species and treatments. Change in mean attribute values was influenced by interactions with grazing history and treatments. Some historical and grazing treatments had a negative effect on the palatable <i>O. sinuatum</i> and no significant effect on moderately palatable <i>P. empetrifolia</i> or unpalatable <i>P. pallens</i>. The age of the originally marked individuals are unknown but &gt;70% of these individuals survived over the 25-year period. Our results support previous findings that dwarf shrubs in deserts are slow growing and long lived, and that grazing regime affects plant growth.
DOI: 10.6084/m9.figshare.7200653.v1
title: Comparison of physiological responses to high temperatures in juvenile and adult Cape Rockjumpers <i>Chaetops frenatus</i><sup>*</sup>

description: Concerns about climate change have led to an increase in studies on physiological mechanisms birds possess to cope with increasing temperatures. For range-restricted species such as Cape Rockjumpers <i>Chaetops frenatus</i>, whose population declines are correlated with habitat warming, we identified juvenile physiological responses to high temperature as a potential gap in current knowledge. We compared metabolic rate, evaporative water loss, evaporative cooling efficiency (calculated from evaporative water loss and resting metabolic rate) and body temperature in juveniles (<i>n</i> = 5) with adult birds (<i>n</i> = 10) to a ramped temperature profile (30–42 °C). Although juveniles exhibited no significant difference in cooling efficiency, they had higher evaporative water loss, resting metabolic rate and body temperature. This suggests that while juvenile birds show similar abilities to dissipate metabolic heat evaporatively, they face higher overall water and energy demands, and thus higher thermoregulatory costs in maintaining body temperature as overall temperatures continue to increase.
DOI: 10.7284/133612
title: INS (Inertial Navigation System) data collected during research cruise SR1902 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200632
title: Supplementary Material for: Clinical Impact of a Restrictive Labor Induction Approval Process

description: <b><i>Background/Aims:</i></b> The aim of this study was to evaluate the impact of a restrictive labor induction approval process on induction and primary cesarean delivery rates. <b><i>Methods:</i></b> A retrospective cohort study was conducted at a tertiary care academic center from 2006 through 2012. The cohort of deliveries before (pre-intervention) and after (post-intervention) the process included term, singleton pregnancies with no contraindication to vaginal delivery. The primary outcome was induction of labor rates, subgrouped on the basis of whether it was medically or nonmedically indicated. Secondary outcomes included the primary cesarean rate and other maternal and neonatal outcomes. <b><i>Results:</i></b> Of 13,753 deliveries, 6,746 met study inclusion criteria. There was a significant decrease in induction rates comparing the pre- and post-intervention periods (21.0 vs. 18.5%, <i>p</i> = 0.01). Nonmedically indicated induction rates also decreased significantly (2.9 vs. 0.6%, <i>p</i> &lt; 0.001). No difference was observed in medically indicated induction (18.1 vs. 17.9%, <i>p</i> = 0.84), the primary cesarean rate (14.4 vs. 15.8%, <i>p</i> = 0.12), or any of the measured neonatal outcomes (<i>p</i> &gt; 0.05). <b><i>Conclusions:</i></b> Implementation of a labor induction approval process was associated with a significant reduction in overall and non-indicated induction rates but did not affect the primary cesarean rate or neonatal outcomes.
DOI: 10.7284/133594
title: Meteorological Station data collected during research cruise SR1902 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200512
title: New mechanistic insights into the Claisen rearrangement of chorismate – a Unified Reaction Valley Approach study

description: The <i>Bacillus subtilis</i> chorismate mutase catalysed Claisen rearrangement of chorismate to prephenate is one of the few pericyclic processes in biology, and as such provides a rare opportunity for understanding how Nature promotes such rearrangements so successfully. The major focus of this work is on (i) Exploring the hypothesis that the mechanism of the chorismate rearrangement is the same in the gas phase, in the aqueous solution and in the enzyme; (ii) Investigating current suggestions that the enzyme lowers the barrier via transition state stabilisation rather than via space confinement; and (iii) A comparison of Nature's way of catalysing the reaction with a gold(I) catalysed chorismate rearrangement. Based the Unified Reaction Valley Approach (URVA), for the first time, a detailed one-to-one comparison of the rearrangement in the gas phase, in the aqueous solution and in the enzyme is presented. URVA confirms that the actual chemical process of CO bond breaking and CC bond forming is the same for all media and unravels the unique catalytic function of the enzyme as a combination of shortening the process of positioning the enolpyruvyl side chain over the cyclohexadienyl ring by space confinement in concert with facilitating CO cleavage by enhanced charge polarisation. The transition state does not play a signifiant role for the rearrangement. In contrast, the gold catalyst changes the chemical process. The rearrangement is split into two steps by switching between Au[I]-<i>π</i> and Au[I]-<i>σ</i> complexation, thus avoiding the energy consuming CO breakage in the first step. Suggestions are made for metalloenzyme analogues combining both strategies.
DOI: 10.6084/m9.figshare.7200512.v1
title: New mechanistic insights into the Claisen rearrangement of chorismate – a Unified Reaction Valley Approach study

description: The <i>Bacillus subtilis</i> chorismate mutase catalysed Claisen rearrangement of chorismate to prephenate is one of the few pericyclic processes in biology, and as such provides a rare opportunity for understanding how Nature promotes such rearrangements so successfully. The major focus of this work is on (i) Exploring the hypothesis that the mechanism of the chorismate rearrangement is the same in the gas phase, in the aqueous solution and in the enzyme; (ii) Investigating current suggestions that the enzyme lowers the barrier via transition state stabilisation rather than via space confinement; and (iii) A comparison of Nature's way of catalysing the reaction with a gold(I) catalysed chorismate rearrangement. Based the Unified Reaction Valley Approach (URVA), for the first time, a detailed one-to-one comparison of the rearrangement in the gas phase, in the aqueous solution and in the enzyme is presented. URVA confirms that the actual chemical process of CO bond breaking and CC bond forming is the same for all media and unravels the unique catalytic function of the enzyme as a combination of shortening the process of positioning the enolpyruvyl side chain over the cyclohexadienyl ring by space confinement in concert with facilitating CO cleavage by enhanced charge polarisation. The transition state does not play a signifiant role for the rearrangement. In contrast, the gold catalyst changes the chemical process. The rearrangement is split into two steps by switching between Au[I]-<i>π</i> and Au[I]-<i>σ</i> complexation, thus avoiding the energy consuming CO breakage in the first step. Suggestions are made for metalloenzyme analogues combining both strategies.
DOI: 10.7284/133599
title: Multibeam Echosounder data collected during research cruise SR1902 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133600
title: Multibeam Echosounder data collected during research cruise SR1902 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200614.v1
title: QP ICS Data.docx

description: Links to threads and videos used in 'Quantified play: Self-tracking in videogames’
DOI: 10.6084/m9.figshare.7200278
title: Additional file 1: of Occurrence and characterization of methicillin-resistant Staphylococcus pseudintermedius in successive parturitions of bitches and their puppies in two kennels in Italy

description: Table S1. (XLS 260 kb)
DOI: 10.6084/m9.figshare.7200278.v1
title: Additional file 1: of Occurrence and characterization of methicillin-resistant Staphylococcus pseudintermedius in successive parturitions of bitches and their puppies in two kennels in Italy

description: Table S1. (XLS 260 kb)
DOI: 10.7284/133606
title: Winch data collected during research cruise SR1902 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200275
title: MOESM7 of Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

description: Additional file 7. The correlation values of the microbes from the facial skin (sheet 1) and gut (sheet 2) microbiomes. It also contains supporting information on identified phages (sheet 3), biofilm formation genes (sheet 4), and E. coli toxin/anti-toxin genes (sheet 5), as well as the identified toxins from Fusobacteria (sheet 6) and Clostridia (sheet 7).
DOI: 10.6084/m9.figshare.7200275.v1
title: MOESM7 of Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

description: Additional file 7. The correlation values of the microbes from the facial skin (sheet 1) and gut (sheet 2) microbiomes. It also contains supporting information on identified phages (sheet 3), biofilm formation genes (sheet 4), and E. coli toxin/anti-toxin genes (sheet 5), as well as the identified toxins from Fusobacteria (sheet 6) and Clostridia (sheet 7).
DOI: 10.7284/133607
title: Winch data collected during research cruise SR1902 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200269
title: MOESM6 of Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

description: Additional file 6. The identified proteins related to xenobiotics metabolism from the facial skin and gut microbiomes (sheets 1 and 2), as well as the identified genes from the facial skin and gut microbiomes related to putrescine and other carcass compounds (sheets 3 and 4). It also contains the identified resistance genes (sheets 5 and 6), and information on other identified genes related to pathogenicity (e.g. haemolysins) and health protection (e.g. antiparasitics) (sheet 7).
DOI: 10.7284/133608
title: Winch data collected during research cruise SR1902 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200269.v1
title: MOESM6 of Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

description: Additional file 6. The identified proteins related to xenobiotics metabolism from the facial skin and gut microbiomes (sheets 1 and 2), as well as the identified genes from the facial skin and gut microbiomes related to putrescine and other carcass compounds (sheets 3 and 4). It also contains the identified resistance genes (sheets 5 and 6), and information on other identified genes related to pathogenicity (e.g. haemolysins) and health protection (e.g. antiparasitics) (sheet 7).
DOI: 10.6084/m9.figshare.7200266
title: Additional file 2 of Integrating omics datasets with the OmicsPLS package

description: R code used in data analysis and simulation. This pdf contains the R code used to obtain results for the data analysis and simulation study. (R 6 kb)
DOI: 10.6084/m9.figshare.7200266.v1
title: Additional file 2 of Integrating omics datasets with the OmicsPLS package

description: R code used in data analysis and simulation. This pdf contains the R code used to obtain results for the data analysis and simulation study. (R 6 kb)
DOI: 10.7284/133619
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR1903 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200254
title: MOESM4 of Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

description: Additional file 4. Identified potential pathogens in the vultures’ facial skin and gut microbiomes (sheet 1–4). The document also contains identified Clostridia toxin/antitoxins (sheet 5), pathogenic genes (sheet 6), strains with sporulation potential (sheet 7), and short chain fatty acids (sheet 8).
DOI: 10.7284/133615
title: Expendable Probe data collected during research cruise SR1903 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200254.v1
title: MOESM4 of Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

description: Additional file 4. Identified potential pathogens in the vultures’ facial skin and gut microbiomes (sheet 1–4). The document also contains identified Clostridia toxin/antitoxins (sheet 5), pathogenic genes (sheet 6), strains with sporulation potential (sheet 7), and short chain fatty acids (sheet 8).
DOI: 10.7284/133616
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1903 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200245
title: MOESM3 of Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

description: Additional file 3. The comparative results of the facial skin and gut microbiome taxonomic content (sheet 1) and microbial attributes (sheet 2) identified with MEGAN. It also contains stats on the facial skin and gut microbiome functional annotation (sheet 3) and the bacterial total genes from each pathway from KEGG (sheet 4).
DOI: 10.7284/133621
title: Gravimeter data collected during research cruise SR1903 using a Bell BGM-3 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200239
title: MOESM1 of Reduced use of phosphorus and water in sequential dark fermentation and anaerobic digestion of wheat straw and the application of ensiled steam-pretreated lucerne as a macronutrient provider in anaerobic digestion

description: Additional file 1: Table S1. Concentration of nutrients in substrates (A to E), microbial biomass DF and AD (F and L), modelled nutrient demand DF and AD (G, N and O), nutrients added to DF (H and I) and to AD (P), DF effluents (J and K), AD effluents (modelled; O and T, and measured; Q, U, V and X) and general recommendations on excess concentrations for AD of wastewaters (Y). Concentrations in AD effluents lower than recommended minimum excess concentrations are red and those equal to or higher than recommended are green. Standard deviations for two separate samples are shown after Âą.
DOI: 10.6084/m9.figshare.7200245.v1
title: MOESM3 of Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

description: Additional file 3. The comparative results of the facial skin and gut microbiome taxonomic content (sheet 1) and microbial attributes (sheet 2) identified with MEGAN. It also contains stats on the facial skin and gut microbiome functional annotation (sheet 3) and the bacterial total genes from each pathway from KEGG (sheet 4).
DOI: 10.6084/m9.figshare.7200239.v1
title: MOESM1 of Reduced use of phosphorus and water in sequential dark fermentation and anaerobic digestion of wheat straw and the application of ensiled steam-pretreated lucerne as a macronutrient provider in anaerobic digestion

description: Additional file 1: Table S1. Concentration of nutrients in substrates (A to E), microbial biomass DF and AD (F and L), modelled nutrient demand DF and AD (G, N and O), nutrients added to DF (H and I) and to AD (P), DF effluents (J and K), AD effluents (modelled; O and T, and measured; Q, U, V and X) and general recommendations on excess concentrations for AD of wastewaters (Y). Concentrations in AD effluents lower than recommended minimum excess concentrations are red and those equal to or higher than recommended are green. Standard deviations for two separate samples are shown after Âą.
DOI: 10.7284/133620
title: INS (Inertial Navigation System) data collected during research cruise SR1903 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200230
title: MOESM2 of Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

description: Additional file 2. The identified differentially abundant bacteria of the facial skin microbiome compared to the gut microbiome using a t-test (sheet 1) and a Wilcoxon test (sheet 2). It also contains a summary of the taxonomic identifications from the whole-genomic databases (sheet 3) and a summary of the abundance of the identified differentially abundant species (sheet 4).
DOI: 10.6084/m9.figshare.7200230.v1
title: MOESM2 of Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

description: Additional file 2. The identified differentially abundant bacteria of the facial skin microbiome compared to the gut microbiome using a t-test (sheet 1) and a Wilcoxon test (sheet 2). It also contains a summary of the taxonomic identifications from the whole-genomic databases (sheet 3) and a summary of the abundance of the identified differentially abundant species (sheet 4).
DOI: 10.7284/133625
title: INS (Inertial Navigation System) data collected during research cruise SR1903 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133626
title: INS (Inertial Navigation System) data collected during research cruise SR1903 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7200218
title: MOESM1 of Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

description: Additional file 1. The number of sequencing reads at the different filtering stages and metadata information on the samples (sheet 1). It also contains the read mapping counts to the various whole genome databases with MGmapper using the facial skin (sheet 2) and gut (sheet 3) datasets, as well as the bacterial taxonomic identifications from the 16S results in the study by Roggenbuck et al. [17] not found in the metagenomic bacterial taxonomic identification (sheet 4).
DOI: 10.7284/133627
title: INS (Inertial Navigation System) data collected during research cruise SR1903 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition