cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14097659
title: Black Aphids Glue Paper Traps Dataset

description: This dataset focuses on black aphid detection. It was created in a greenhouse cucumber cultivation as part of the H2020 PestNu project (No. 101037128). Images were captured over 44 days at UTH facilities in Volos, Greece, using mobile phone cameras positioned 30-40 cm from five pheromone-based glue-paper traps. One trap replacement occurred due to insect accumulation, with images collected mainly on weekdays, totaling 220 images.

Expert agronomists annotated 13,357 black aphids using Roboflow, averaging 60.71 annotations per image. The dataset was split into training and validation subsets with an 80–20% ratio, leading to 175 images for training and 45 for validation. The dataset is organized into two main folders: “0_captured_dataset" contains the original 220 .jpg images. "1_annotated_dataset" includes the images and the annotated data, split into separate subfolders for training and validation. 

The Black Aphids count in each subset can be seen in the following table:




Set
Images
Black Aphids Instances


Training
175
10873


Validation
45
2484


Total
220
13357




 

Acknowledgments: This work is supported by the Green Deal PestNu project, funded by European Union’s Horizon 2020 research and innovation programme under the grant agreement No. 101037128, and the E-SPFdigit project, funded by European Union’s Horizon Europe research and innovation programme under the grant agreement No. 101157922.
DOI: 10.5281/zenodo.14097660
title: Black Aphids Glue Paper Traps Dataset

description: This dataset focuses on black aphid detection. It was created in a greenhouse cucumber cultivation as part of the H2020 PestNu project (No. 101037128). Images were captured over 44 days at UTH facilities in Volos, Greece, using mobile phone cameras positioned 30-40 cm from five pheromone-based glue-paper traps. One trap replacement occurred due to insect accumulation, with images collected mainly on weekdays, totaling 220 images.

Expert agronomists annotated 13,357 black aphids using Roboflow, averaging 60.71 annotations per image. The dataset was split into training and validation subsets with an 80–20% ratio, leading to 175 images for training and 45 for validation. The dataset is organized into two main folders: “0_captured_dataset" contains the original 220 .jpg images. "1_annotated_dataset" includes the images and the annotated data, split into separate subfolders for training and validation. 

The Black Aphids count in each subset can be seen in the following table:




Set
Images
Black Aphids Instances


Training
175
10873


Validation
45
2484


Total
220
13357




 

Acknowledgments: This work is supported by the Green Deal PestNu project, funded by European Union’s Horizon 2020 research and innovation programme under the grant agreement No. 101037128, and the E-SPFdigit project, funded by European Union’s Horizon Europe research and innovation programme under the grant agreement No. 101157922.
DOI: 10.5281/zenodo.14097922
title: bubo_scandiacus_spades_01.fasta.gz
DOI: 10.5281/zenodo.14097923
title: bubo_scandiacus_spades_01.fasta.gz
DOI: 10.15468/dl.ju3u8z
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "GadmGid is IDN.31_1",
 "TaxonKey is Estrildidae"
 ]
}

 The dataset includes 36 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010335-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2fh0nm
title: CCDC 2248760: Experimental Crystal Structure Determination

description: Related Article: Martin Börner|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.2akfps
title: Occurrence Download

description: A dataset containing 8279 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Alibertia edulis (Rich.) A.Rich. ex DC., Borojoa lanceolata (Cham.) Cuatrec., Alibertia oligantha K.Schum., Cordiera oligantha (K.Schum.) Kuntze, Amaioua utilis Baill., Alibertia panamensis L.Riley, Amaioua edulis (Rich.) Baill., Cordiera edulis (Rich.) Kuntze, Genipa edulis Rich., Sabicea edulis (Rich.) Seem. ex B.D.Jacks., Thieleodoxa lanceolata Cham.)"
 ]
}

 The dataset includes 8279 records from 309 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010333-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2k22yp
title: CCDC 2355502: Experimental Crystal Structure Determination

description: Related Article: Shimin Jiang, Meng Liang, Xi Chen, Ruchun Yang, Hai-Xin Ding, Mu-Jia Luo, Haiyang Huang, Xian-Rong Song, Qiang Xiao|2024|J.Org.Chem.|89|15694|doi:10.1021/acs.joc.4c01829
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h0t2f
title: CCDC 2294684: Experimental Crystal Structure Determination

description: Related Article: Shimin Jiang, Meng Liang, Xi Chen, Ruchun Yang, Hai-Xin Ding, Mu-Jia Luo, Haiyang Huang, Xian-Rong Song, Qiang Xiao|2024|J.Org.Chem.|89|15694|doi:10.1021/acs.joc.4c01829
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.c773j8
title: Occurrence Download

description: A dataset containing 724 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hortophora transmarina (Keyserling, 1865)"
 ]
}

 The dataset includes 724 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010881-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwxxvs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tuta absoluta (Meyrick, 1917)",
 "Country is Brazil",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010338-241107131044228/datasets/export for details.
DOI: 10.15468/dl.eqp7va
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atropacarus striculus (Koch, 1835)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-170 27, -56 27, -56 82, -170 82, -170 27))"
 ]
}

 The dataset includes 213 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010339-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14097535
title: Attitude Scenario Data PVact Exploration

description: This data comprises the files for the attitude-varying scenarios in the PVact exploration paper.

The .csv and .xls files comprise the data of the respective (sub-)scenarios, whereas the .sh scripts document how the data was downloaded. The calculations were done on the infrastructure of the Leipzig Computing Center as is documented in the respective paper.
DOI: 10.5281/zenodo.14097536
title: Attitude Scenario Data PVact Exploration

description: This data comprises the files for the attitude-varying scenarios in the PVact exploration paper.

The .csv and .xls files comprise the data of the respective (sub-)scenarios, whereas the .sh scripts document how the data was downloaded. The calculations were done on the infrastructure of the Leipzig Computing Center as is documented in the respective paper.
DOI: 10.15468/dl.tnp5bt
title: Occurrence Download

description: A dataset containing 10604120 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apiaceae"
 ]
}

 The dataset includes 10604120 records from 7006 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010331-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vk7th
title: Occurrence Download

description: A dataset containing 509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence, Machine Observation)",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Danaus plexippus (Linnaeus, 1758)",
 "Year 1841-2022"
 ]
}

 The dataset includes 509 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212923-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62vyef
title: Occurrence Download

description: A dataset containing 489852 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Daucus carota L.",
 "Year 1970-2023"
 ]
}

 The dataset includes 489852 records from 2333 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043461-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.24668.72326
title: 1st with Generator NCoppedge Evidence of Perpetual Motion
DOI: 10.5286/isis.e.rb2420070-1
title: Investigation of incommensurate structures in β-NaFeO2
DOI: 10.13140/rg.2.2.29826.40645
title: Food safety and covid 19
DOI: 10.5286/isis.e.rb2420070
title: Investigation of incommensurate structures in β-NaFeO2
DOI: 10.13140/rg.2.2.28935.11683
title: Chrome Alum Patterns
DOI: 10.5286/isis.e.rb2410046-1
title: DRUG-LIPID INTERPLAY PROBED BY NEUTRON SPECTROSCOPY - AIMING AT LIPOSOME-ENCAPSULATION FOR A CONTROLLED DRUG DELIVERY
DOI: 10.5286/isis.e.rb2410046
title: DRUG-LIPID INTERPLAY PROBED BY NEUTRON SPECTROSCOPY - AIMING AT LIPOSOME-ENCAPSULATION FOR A CONTROLLED DRUG DELIVERY
DOI: 10.5286/isis.e.rb2410639-1
title: Probing the critical floating phase of the S=5/2 Heisenberg antiferromagnetic zigzag spin chain
DOI: 10.5286/isis.e.rb2410639
title: Probing the critical floating phase of the S=5/2 Heisenberg antiferromagnetic zigzag spin chain
DOI: 10.15468/dl.w3d54n
title: Occurrence Download

description: A dataset containing 522124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Continent is Europe",
 "TaxonKey is Primula veris",
 "Year 1951-2025"
 ]
}

 The dataset includes 522124 records from 1811 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041634-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/j7jn4cggrf.1
title: data

description: data
DOI: 10.15468/dl.x82v2t
title: Occurrence Download

description: A dataset containing 2320 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artemisia stolonifera (Maxim.) Kom."
 ]
}

 The dataset includes 2320 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008098-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abrcgn
title: Occurrence Download

description: A dataset containing 299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buddleja madagascariensis Lam.",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 299 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008096-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28741037
title: Supplementary table for methylation QTL Analysis

description: This supplementary table contains the full list of association results
DOI: 10.6084/m9.figshare.28741037.v1
title: Supplementary table for methylation QTL Analysis

description: This supplementary table contains the full list of association results
DOI: 10.15468/dl.9c39un
title: Occurrence Download

description: A dataset containing 759 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squatina squatina (Linnaeus, 1758)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 759 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008099-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25857454
title: Magnetostriction, piezomagnetism and domain nucleation in a kagome antiferromagnet

description: Magnetostriction, piezomagnetism and domain nucleation in a kagome antiferromagnet
DOI: 10.6084/m9.figshare.25857454.v1
title: Magnetostriction, piezomagnetism and domain nucleation in a kagome antiferromagnet

description: Magnetostriction, piezomagnetism and domain nucleation in a kagome antiferromagnet
DOI: 10.6084/m9.figshare.24216240
title: SRF SUMOylation modulates smooth muscle phenotypic switch and vascular remodeling

description: RNA-seq raw data
DOI: 10.6084/m9.figshare.24216240.v1
title: SRF SUMOylation modulates smooth muscle phenotypic switch and vascular remodeling

description: RNA-seq raw data
DOI: 10.6084/m9.figshare.26198822
title: Atom-pair engineering of single-atom nanozyme for boosting peroxidase-like activity

description: The raw data of "Atom-pair engineering of single-atom nanozyme for boosting peroxidase-like activity".
DOI: 10.6084/m9.figshare.26198822.v1
title: Atom-pair engineering of single-atom nanozyme for boosting peroxidase-like activity

description: The raw data of "Atom-pair engineering of single-atom nanozyme for boosting peroxidase-like activity".
DOI: 10.6084/m9.figshare.26344321
title: Plant viruses exploit insect salivary GAPDH to modulate plant defenses

description: Oxidation and S-glutathionylation of salivary GAPDH secreted by leafhopper in rice plant
DOI: 10.6084/m9.figshare.26344321.v1
title: Plant viruses exploit insect salivary GAPDH to modulate plant defenses

description: Oxidation and S-glutathionylation of salivary GAPDH secreted by leafhopper in rice plant
DOI: 10.6084/m9.figshare.26150392
title: Synchronized crystallization in tin-lead perovskite solar cells

description: voltage-current density curves; pv parameter statistics; stability record.
DOI: 10.6084/m9.figshare.26150392.v1
title: Synchronized crystallization in tin-lead perovskite solar cells

description: voltage-current density curves; pv parameter statistics; stability record.
DOI: 10.15468/dl.94tcdz
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Polyclita A.C.Sm."
 ]
}

 The dataset includes 164 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063714-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cqnsa
title: Occurrence Download

description: A dataset containing 1068409 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is National Herbarium of Victoria (MEL) AVH data"
 ]
}

 The dataset includes 1068409 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063684-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13309434
title: Eichtersheim Schloss-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.2zvsfz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.480165 -32.858817, 147.480165 -32.861063, 147.468936 -32.861063, 147.468936 -32.863309, 147.466691 -32.863309, 147.466691 -32.8678, 147.464445 -32.8678, 147.464445 -32.872292, 147.462199 -32.872292, 147.462199 -32.874538, 147.466691 -32.874538, 147.466691 -32.872292, 147.475674 -32.872292, 147.475674 -32.870046, 147.484657 -32.870046, 147.484657 -32.8678, 147.49364 -32.8678, 147.49364 -32.865555, 147.495886 -32.865555, 147.495886 -32.863309, 147.486903 -32.863309, 147.486903 -32.861063, 147.484657 -32.861063, 147.484657 -32.858817, 147.480165 -32.858817))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063715-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.10418628
title: Datasets for the paper "Advancing Scanning Probe Microscopy Simulations: A Decade of Development in Probe-Particle Models"

description: Input data for probe-particle (PP) atomic force microscopy (AFM), scanning tunnelling microscopy (STM), and Kelvin probe microscopy (KPFM) simulations in the paper "Advancing Scanning Probe Microscopy Simulations: A Decade of Development in Probe-Particle Models".

Included files:



CO_tip_densities.tar.gz: the total and delta electron densities for a CO tip.

hartree-density.tar.gz: the hartree potential (LOCPOT.xsf), electron density (CHGCAR.xsf), and xyz geometry with point charges (mol.xyz) for 6 example molecules: C60 fullerene, formic acid dimer (FAD), 4-(4-(2,3,4,5,6- pentafluorophenylethynyl)-2,3,5,6- tetrafluorophenylethynyl) phenylethynylbenzene (FFPB), pentacene, phtalocyanine, perylene carboxylic anhydride (PTCDA).

dft-afm.tar.gz: DFT-calculated forces for the CO-tip for all of the example molecules. Saved as numpy npz files that containt the force arrays under the key 'force' and the physical extent of the region in Ångströms under the key 'scan_window'.

Fig_4_STM_data.tar.gz: Hartree potential (cube_001_hartree_potential.cube) and eigenvectors (KS_eigenvectors.band_1.kpt_1.out) of PTCDA for PPSTM simulations.

KPFM_Hartree.tar.gz: Hartree potentials of FFPB with a bias voltage for KPFM simulations.


Reproducing the figures in the manuscript:



Fig. 2 (comparison of force-field models): Install ppafm with the [opencl] option, and run the example script in the ppafm repository at examples/paper_figure/run_simulation.py. The image is saved into the same folder with the script.

Fig. 3 (KPFM LCPD map): Install ppafm, navigate to examples/FFPB_KPFM, and run the script ./run.sh. After running the script, the LCPD map of Fig. 3(a) can be found in LCPD_atoms_cbar_018.png and the AFM map of Fig. 3(b) in Q-0.10K0.25V0.00/Amp0.50/df_atoms_cbar_018.png.

Fig. 4 (STM dI/dV map): Download and compile the PPSTM code (https://github.com/Probe-Particle/PPSTM). After that navigate to tests/PTCDA_mol and use the run_all.sh script.

Fig. 5 (IETS): Install ppafm, navigate to examples/FePc_Au-IETS, and run the script run_ppafm-iets.sh. The IETS image can be found in the Q0.00K0.24 folder.


The ppafm version 0.3.1, and PPSTM version 1.0.2 (https://doi.org/10.5281/zenodo.10669867) was used when producing the images for the manuscript.
DOI: 10.5281/zenodo.10418629
title: PPAFM example data: C60, FAD, FFPB, Pentacene, Phtalocyanine, PTCDA

description: Example input data for probe-particle (PP) atomic force microscopy (AFM) simulations.

Included files:



CO_tip_densities.tar.gz: the total and delta electron densities for a CO tip.

hartree-density.tar.gz: the hartree potential (LOCPOT.xsf), electron density (CHGCAR.xsf), and xyz geometry with point charges (mol.xyz) for 6 example molecules: C60 fullerene, formic acid dimer (FAD), 4-(4-(2,3,4,5,6- pentafluorophenylethynyl)-2,3,5,6- tetrafluorophenylethynyl) phenylethynylbenzene (FFPB), pentacene, phtalocyanine, perylene carboxylic anhydride (PTCDA).

dft-afm.tar.gz: DFT-calculated forces for the CO-tip for all of the example molecules. Saved as numpy npz files that containt the force arrays under the key 'force' and the physical extent of the region in Ångstöms under the key 'scan_window'.