cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/78w7dj
title: Geographical delimitation of the Aude sub-catchment areas (Talanoa-Water project)

description: Geospatial Data representing the geographical delimitation of the Aude sub-catchment areas used for the semi-distribution of the integrated hydrological model used in the french lab of the Talanoa-Water project (2021-2025).
DOI: 10.57745/abp160
title: Climate change and the potential distribution of the glassy-winged sharpshooter (Homalodisca vitripennis), an insect vector of Xylella fastidiosa

description: The dataset contains rasters of climate suitability for the glassy-winged sharpshooter (Homalodisca vitripennis). Climate suitability is estimated using a Maxent model calibrated with current climate conditions. The dataset contains the current climate suitability index (0-1) and reclassified values (suitable/unsuitable and optimal/suitable/unsuitable). Future estimations were computed using 6 GCM, 4 SSP and 4 time periods. The dataset contains the consensus (based on the median) and committee averagings.
DOI: 10.57745/bdqbf8
title: Exogenous porcine somatotropin administered to late pregnant gilts alters liver and muscle functionalities in pig fetuses

description: Neonatal maturity depends on the maternal capacity to provide nutrients for fetal growth. Pregnant gilts received either daily injections of sterile water (CTL group, n = 15) or of 5 mg of porcine somatotropin (pST group, n = 17) from days 90 to 109 of gestation. At day 110 post-conceptus, pairs of fetuses (one of small and one of average size within a litter) were selected. The dataset shows plasma circulating concentrations of nutrients and gene expression levels in liver and Longissimus muscle in fetuses.
DOI: 10.57745/bhlnqa
title: GR3D US

description: Data, script and GR3D US code version produced for publication
DOI: 10.57745/bq5ymd
title: TALN - archives : articles des conférences TALN et RECITAL

description: Archive numérique francophone des articles de recherche en Traitement Automatique des Langues publiés par l'Association pour le Traitement Automatique des LAngues (ATALA) lors des conférences RECITAL (Rencontres des Etudiants Chercheurs en Informatique pour le TAL) et TALN (Traitement Automatique des Langues Naturelles) de 1997 à 2023. Cette version étend le corpus produit par Florian Boudin en 2015 pour y ajouter les éditions de 2016 à 2023.
DOI: 10.57745/bt0oly
title: Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae

description: This dataset includes all data and code used for the LOLA analysis (enrichment of TE around chemosensory receptors) in the paper "Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae".
DOI: 10.57745/as7ntu
title: Resilience of helminth - gut microbiota interactions in a large mammal

description: We used the horse–cyathostomin system to quantify the resilience of the nematode-bacteria interactions following an anthelmintic treatment. This matched case-control study enrolled 20 healthy and 20 naturally infected horses, whereby half received an anthelmintic drug to remove adult worms from the gut lumen without hampering the development of larval stages. Metabarcoding approaches were implemented to track faecal microbiota and cyathostomin community compositions over a 42-day time-course.
DOI: 10.57745/aeb7sv
title: P450MolDyn_DP2024

description: Raw molecular dynamic data and accessory file associated with paper, "Geometry encoded molecular dynamics enables deep learning insights into P450 region-specificity control."
DOI: 10.57745/aka33z
title: Time course of behavioral of manipulation of Gammarus pulex by Pomphorhynchus laevis

description: Many trophically transmitted parasites with complex life cycles manipulate their intermediate host’s antipredatory defenses in ways facilitating their transmission to final host by predation. Some parasites also protect the intermediate host from predation when noninfective during its ontogeny. The acanthocephalan Pomphorynchus laevis, a fish intestinal helminth, infecting freshwater gammarid amphipods as intermediate hosts, is using such a strategy of protection- then-exposure to predation by the definitive host. The whole time-course of this sequence of behavioral switch is however not yet known, and only one antipredator behavior has been studied to date. Are provided in this data set: the day of death of the animals, infected or not, their refuge use scores and their inactivity rate.
DOI: 10.57745/bdycii
title: Orthophoto - Glenan - Ilot du Veau

description: Orthophotographie aérienne à très haute résolution spatiale (3 cm) de l'îlot du Veau, archipel de Glénan, Finistère, France. Acquisition 07/04/2025. Collaboration Réserve Naturelle de Glénan Projection Lambert 93 (EPSG 2154).
DOI: 10.57745/bzxyj8
title: Replication Data for the publication: High-resolution Downscaling of Disposable Income in Europe using Open-source Data

description: Replication data and code for the publication : High-resolution Downscaling of Disposable Income in Europe using Open-source Data
DOI: 10.57745/agkmf0
title: Data associated with the paper "Electrostatic modulation of excitonic fluid in GaN/AlGaN quantum wells by deposition of few-layer graphene and nickel/gold films"

description: Data associated with the paper "Electrostatic modulation of excitonic fluid in GaN/AlGaN quantum wells by deposition of few-layer graphene and nickel/gold films". The data are presented in hdf5 format and organised in 4 folders named as the corresponding figures from the article.
DOI: 10.57745/aiegf3
title: TE annotation in Spodoptera littoralis and S. frugiperda

description: .gff3 files of TE regions in Spodoptera littoralis and S. frugiperda genomes
DOI: 10.57745/applkl
title: Données de spectrométrie infrarouge des sols de la forêt de Chantilly

description: Spectres proches infra-rouges sur l'ensemble de la forêt de Chantilly à raison d'un point de prélèvement sur une maille de 70m x 70m pour l'horizon 0-10cm et un point sur 4 pour les horizons plus profonds (jusqu'à 60 cm)
DOI: 10.57745/atthz3
title: MILAM Data

description: Full datasets of relative abundance of OTUS in ileal, colonic and fecal microbiota, relative gene expression in ileum and colon, and physiological variables related to epithelial barrier and immune functions of formula-fed and sow-milk-fed mini-piglets ; datasets of relative abundance of OTUS in sow milk and in rehydrated formula.
DOI: 10.57745/atdvfj
title: RPG complété 2021 Région Île-de-France

description: RPG complété 2021. Complète le RPG campagne 2021 pour les départements de la région Île-de-France (77, 78, 91, 93, 94, 95). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2023.
DOI: 10.57745/avnaup
title: DEER experimental data for the ABC transporter BmrA

description: This archive contains the experimental EPR double electron-electron resonance (DEER) data from the publication "The transport activity of the multidrug ABC transporter BmrA does not require a wide separation of the nucleotide-binding domains" by Margot Di Cesare, Elise Kaplan, Julia Rendon, Guillaume Gerbaud, Sepideh Valimehr, Alexia Gobet, Thu-Anh Thi Ngo, Vincent Chaptal, Pierre Falson, Marlène Martinho, Pierre Dorlet, Eric Hanssen, Jean-Michel Jault and Cédric Orelle. The files correspond to the raw data in Bruker Elexsys XEpr format and their corresponding ascii format.
DOI: 10.57745/b9kjnh
title: DATA: Sexual interference revealed by joint study of male and female pollination success in chestnut

description: Data used in the research article entitled "Sexual interference revealed by joint study of male and female pollination success in chestnut".
DOI: 10.57745/bbtzvp
title: RPG complété 2020 Région Midi-Pyrénées

description: RPG complété 2020. Complète le RPG campagne 2020 pour les départements de la région Midi-Pyrénées (09, 12, 31, 32, 46, 65, 81, 82). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2022.
DOI: 10.57745/aegogn
title: IDA_Physico_chemical_data

description: This dataset contains Physico-chemical data from the sites sampled in both Martinique and Guadeloupe. Those data were used to build the IDA methodology.
DOI: 10.57745/aickx5
title: Data related to the publication : Expression of intestinal amino acid transporters, gut morphology, and amino acid digestibility in pigs fed proteins or free amino acids

description: Data set (in excel) from an experiment entitled "Expression of intestinal amino acid transporters, gut morphology, and amino acid digestibility in pigs fed proteins or free amino acids"; The data set contains intestinal morphology and the gene expression of SLC15A1, SLC1A5, SLC7A1, SLC7A7, SLC7A9 of the duodenum, jejunum, and ileum and the amino acid digestibility measured at the jejunum level of 30 growing pigs after feeding a diet that supplies amino acids either as intact protein, free amino acids and small peptides, or completely as free amino acids
DOI: 10.57745/bfexce
title: Données de réplication pour : Trait-independent habitat associations explain low co-occurrence in native and exotic birds on a tropical volcanic island

description: On oceanic islands, ecosystem processes hold on a limited number of species. However, their patterns of coexistence and the resulting variations of assemblage composition along environmental gradients often remain insufficiently known to set up efficient conservation measures in the face of increasing anthropogenic pressure. In particular, stronger human impacts on insular as opposed to continental habitats, as well as the massive introduction of exotic species on islands, modify the functional composition of species assemblages and may alter key ecological functions. Here, we explored the distributions of terrestrial bird species, and the resulting taxonomic and functional compositions of their assemblages, along the main habitat gradients structuring landscapes in La Réunion, an oceanic island located in the Madagascan region. We used multivariate analyses and generalized additive models to analyze a set of 372 point counts, surveyed 10 years before the establishment of La Réunion National Park. So doing, we established a reference point for the impacts of exotic species and human alterations of habitats on the island’s bird assemblages prior to the setting of an ecosystem-level conservation strategy. We found that native and exotic species overlapped at mid-elevations, but the former were tied to native habitats while the latter were associated with urban areas and man-modified landscape mosaics. Species with contrasting trophic preferences were segregated along habitat gradients. However, overall, ecological traits had a weak role in explaining variations in the composition of bird assemblages. We conclude that native and exotic species in La Réunion formed two distinct species assemblages both in terms of traits and habitat preferences, therefore unlikely to interact over available resources. However, several ongoing processes including recent introductions, continued anthropogenic pressures on habitats, and the conservation measures related to La Réunion National Park may all have recently altered these patterns. Performing further analyses of historical datasets complemented with diachronic surveys therefore appears essential to monitor the efficiency of recently-established conservation measures in favour of insular ecosystems. This archive contains all the data and R scripts necessary to replicate the analyses performed on this article.
DOI: 10.57745/bhzvxd
title: Inadequate vitamin A supplementation during pregnancy, lactation and the first weeks of life can impact lipid and vitamin A metabolism in rat offspring

description: This dataset contains the data of the publication "Inadequate vitamin A supplementation during pregnancy, lactation and the first weeks of life can impact lipid and vitamin A metabolism in rat offspring".
DOI: 10.57745/albivf
title: Data for riverine and palustrine swamp plant communities in Southern Québec, Canada

description: Data were collected in 28 riverine and 28 palustrine swamps were selected (N sites = 56), evenly divided among the two watersheds (Bécancour and Yamaska rivers) and the two ecoregions (St. Lawrence Lowlands and Appalachian foothills). A riverine swamp was defined as one directly crossed by a permanent river or located within 20 m of a riverbank. A palustrine swamp was defined as being at least 300 m from a mapped permanent river. In order to sample each swamp equitably, one plot was allotted per hectare in size (i.e., 5 ha = 5 plots), with a minimum number of 3 plots per swamp. Overall, a total of 112 and 101 plots were surveyed in riverine and palustrine swamps, respectively (N plots = 213).
DOI: 10.57745/av1eti
title: Hyperspectral Images of Downy Mildew on Grapevine Leaves

description: Hyperspectral images database following the daily development from 0 to 9 days post inoculation of three strains of downy mildew Plasmopara viticola INRA-Pv13, INRA-Pv42 and INRA-Pv45 inoculated on leaves of Vitis vinifera L. cv Cabernet Sauvignon.
DOI: 10.57745/b2boyy
title: SicpaOpenData for .Net

description: The Sicpa_OpenData libraries allow to facilitate the publication of data to the INRAE dataverse in a transparent way 1/ by simplifying the creation of the metadata document from the data already present in the information systems, 2/ by simplifying the use of dataverse.org APIs. Available as a DLL, the SicpaOpenData for .Net library can be used from all developments using the Microsoft .NET platform
DOI: 10.57745/be4hig
title: Rolling down that mountain: microgeographical adaptive divergence during a fast population expansion along a steep environmental gradient in European beech

description: Genetic variation data and data analysis scripts for the identification of signatures of adaptive divergence in Fagus sylvatica on Mont Ventoux, Southern France
DOI: 10.57745/bgnj3s
title: OSO vecteur 2021 - Département de l'Aude

description: Produit vectoriel de l'occupation du sol OSO 2021 sur le département de l'Aude
DOI: 10.57745/bkgr13
title: Données dossiers individuels Prime Air Bois : rénovation des appareils de chauffage (3 intercommunalités iséroises)

description: Données principales : Données anonymisées issues des dossiers d'instruction de la Prime Air Bois sur les intercommunalités de Grenoble-Alpes-Métropole, Communauté de Communes du Grésivaudan, et Pays Voironnais. Ces données contiennent des informations socio-économiques relatives aux bénéficiaires et à leur moyen de chauffage. Données secondaires : Données issus du questionnaire de satisfaction diffusés aux bénéficiaires de la Prime Air Bois sur les mêmes intercommunalités. Une mise en forme de ces données (jusqu'à avril 2024) est disponible dans l'interface : https://explore-pab.sk8.inrae.fr/#
DOI: 10.57745/bkjocs
title: Histologie des tissus de peau de porc

description: image porc suite
DOI: 10.57745/ccv12u
title: Metatranscriptomics

description: Metatranscriptomics raw and normalised counts data
DOI: 10.57745/ci51ez
title: Genomes_from_microbial_strains_isolated_from_cheese

description: TSV file containing the name and genome accession number of bacterial (n=63) and fungal (n=13) genomes of strains isolated from cheese.
DOI: 10.57745/cmeln3
title: Gene Regulation Network

description: Gene Regulation Network (GRN) is a set of sentences from PubMed abstracts manually annotated for training and evaluating Information Extraction systems. The sentences were selected on the topic of genetics of Bacillus subtilis sporulation. The annotations denote genes, proteins, promoters, and other genic entities, as well as relations between entities. GRN was proposed as a task in the BioNLP Shared Tasks 2013. The tasks include Relation Extraction, and Knowledge Graph Acquisition.
DOI: 10.57745/czi5ux
title: WGS Mutant Gelless

description: During the production of RNAi transgenic lines, we identified a gel-less mutant in the progeny of one T0 line out of nine (line L2). A S1 population of 114 plants segregating for the gel-less phenotype was generated by self-pollination of a heterozygous Micro-Tom gel-less mutant T2 plant (line L-2.10). WT-like and mutant-like bulks were constituted based on the gel-less phenotype for further whole genome sequencing. S1 offsprings were used to constitute the bulks. Equal amounts of leaf tissue from 45 S2 plants (descendant of five S1 plants) were pooled for the WT-like and from 27 S2 plants (descendant of five S1 plants) for the mutant-like bulk. The WT-like bulk was enriched for the homozygous WT allele by selecting S1 progenies that did not segregate for the gel-less phenotype. Genomic DNA was extracted as previously described (Garcia et al., 2016) and sequenced on an Illumina HiSeq 2000 sequencer operating in a 100-bp paired-end run mode at the INRA-GeT-PlaGe-GENOTOUL platform.
DOI: 10.57745/auwwia
title: Matches of Mjav repeat on Mjav contigs

description: Results of a BLASTn search with the Mjav repeat as a query against the M. arenaria contigs with an e-value threshold of 1e-35. Positions of the composite repeats, their orientation and presence / absence of the hmm profiles of the 3 constitutive motifs are indicated.
DOI: 10.57745/b6psx0
title: Speckle-correlation imaging through a kaleidoscopic multimode fiber (experimental data and Python scripts)

description: Data set of the paper : "Speckle-correlation imaging through a kaleidoscopic multimode fiber". This includes the intensity correlation function of the excitation field for the 10.5 cm long fiber, and the measured signal autocorrelation functions for this fiber under dynamic perturbations.
DOI: 10.57745/bamewx
title: Malabar project: datasets of pairwise distances between reads per sample for rbcL marker.

description: What it contains This dataset contains hdf5 files of pairwise distances between reads in a sample, with one file per sample. Samples Samples ar combinations of one location over 4 one season over 4 one tide coefficent among spring/neap one tide among high/low one position between pelagic and benthic As there are no benthic samples at high tide, this leads to 4 x 4 x 2 x 3 = 96 samples. Among them, 32 dissimilarity arrays have been computed, and are available here. Sample names The naming f samples is explained here on an example: sample 190204_PM_PEL_Tey_f20_rbcL. This should be read as: 190204: the date of samplng; from the date, one can derive the season (winter) and the type of tide PM: the tide, PM for high tide and BM for low tide PEL: the water column: PEL for pelagic, BEN for benthic Tey: the location (B13 for Bouée 13, Com for Comprian, Jac for jaquet, Tey for Teychan) f20 is an indicator of the filter flering DNA (here: 20 µ); other values (in µ) are 3 and 0.2 rbcL is the marker used, here rbcL; other marker is 18S-V4, labeled as 18S short description Each file is in hdf5 format with three datasets (in the sense of hdf5 format): distances: array of floats seqid: list of strings; list of read identifiers word: list of strings; reads Dissimilarities have been computed with Smith-Waterman algorithm for local alignment score.
DOI: 10.57745/bshzkv
title: Comparison of genomic-enabled cross selection criteria for the improvement of inbred line breeding populations

description: This dataset supports the study of Danguy et al. about Comparison of genomic-enabled cross selection criteria . It includes yield adjusted phenotypes of INRAE-AO lines evaluated from 2000 to 2016.
DOI: 10.57745/c6p6ww
title: PLAN DE GESTION DE DONNEES DE STRUCTURE DE L’UNITE DE RECHERCHE REVERSAAL

description: Plan de gestion de données de structure de l'unité de recherche REVERSAAL
DOI: 10.57745/bfqdrw
title: Practice Abstract - Participation as a stand holder to exhibitions and how to activate youth there

description: Practice abstract explaining how to encourage young people to attend and participate in forest exhibitions and stands
DOI: 10.57745/bnmynb
title: RPG complété 2018 département 23

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 23. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.57745/c5g8eu
title: Doctorat honoris causa de l'université de Pau et des Pays de l'Adour

description: Ce jeu de données liste les différentes personnalités récompensées par un doctorat honoris causa à l’université de Pau et des pays de l'Adour et inventoriées sur Wikidata, au 10 juin 2024. Cet export s'appuie sur le travail réalisé par les services de communication de l'université de Pau et le portail des collections de l'UPPA.
DOI: 10.57745/b7i0nq
title: Temporal monitoring of earthworm communities at the DIAMS experimental site

description: Study site The study took place in the commune of Mauguio near Montpellier (34), which has a Mediterranean climate with hot, dry summers. The average annual temperature in Mauguio is 14.8°C and the average annual rainfall is 607 mm (Climatik, INRAE). The DIAMs (Dispositif Instrumenté en Agroforesterie Méditerranéenne sous contrainte hydrique) experimental site was set up in 2017 on an INRAE experimental station Diascope. It consists of three land uses: - crops: cereals or legumes ; - agroforestry: linear lines of black locust (Robinia pseudoacacia, Linnaeus 1753) planted in 2017 and 2018, separating alleys cultivated with cereals or legumes similar to those in the crop plots; - black locust (R. pseudoacacia) tree plantation. Farming practices are considered to be conventional but low-input, and are identical in the cultivated areas of the agroforestry plots and the field crop plots, both in terms of tillage and inputs (fertilisation, crop protection). In the forest plots herbaceous plants grew spontaneously following the initial sowing of an alfalfa cover in 2015.
DOI: 10.57745/bwy9qk
title: Radseq based parental maps of a biparental population of the cross Riesling x Gewurztraminer and esca related phenotypic data

description: Genotyping data for female and male maps of the cross Riesling x Gewurztraminer and esca related phenotypic data. SNP markers are derived from a Radseq method. Supporting data for the article published in Plant Disease.
DOI: 10.57745/byli3o
title: Lexique Herelles

description: Ce jeu de données présente le lexique associé au projet Hérelles. Il permet de définir les termes techniques et/ou propres au projet. Il est composé de deux fichiers : Le fichier Glossaire_Herelles contient le lexique spécifique au projet Hérelles. Il est composé de 42 mots et de leur définition. Le tableur Acronymes_Herelles contient la liste des acronymes et leur description.
DOI: 10.57745/bzof4b
title: RPG complété 2018 département 2B

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 2B. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.57745/dbsz5x
title: Biochemical data documenting variations in mucilage polysaccharide amount and macromolecular properties in a range of glycosyltransferase mutants

description: During Arabidopsis seed coat development, copious amounts of mucilage polysaccharides are produced in the epidermal cells. When hydrated on imbibition, these polysaccharides expand and are released to encapsulate the seed as a two layered hydrogel. Polysaccharides are synthesized from UDP-sugars by glycosyltransferases (GTs) and several GTs, with differing activities, have been identified that contribute to mucilage polysaccharide synthesis How these GTs orchestrate production of the complex polysaccharides found in mucilage remains to be determined. In this study, we generated a range of multiple GT mutants using either CRISPR/Cas9 targeted mutation or genetic crosses of existing T-DNA insertion mutants. Mucilage amounts and macromolecular properties (4 traits) were examined for four replicates from 31 different GT mutant combinations.