DOI: 10.22002/gt0cs-5s438
title: Treponema primitia

description: Treponema primitia.  The rest of the files are in ~/Images/050811
description: <strong>Tilt Series Date:</strong> 2005-08-11</p>
<strong>Data Taken By:</strong> Gavin Murphy</p>
<strong>Species / Specimen:</strong> Treponema primitia</p>
<strong>Strain:</strong> ZAS-2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 30.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> Cells provided by Eric Matson, Jared Leadbetter; Data collected and processed by Gavin Murphy</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown in standard media around exponential growth.  Removed from anaerobic tube with syringe.  Directly applied to grids, no centrifugation</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
  T7_050811_tilt.jpg: * associated to rawdata T7_050811_rec.jpg: file associated to 3D Image #21 slicer001.jpg: file associated to 3D Image #21 slicer000.jpg: file associated to 3D Image #21 gme2005-08-11-7_slicer5226.jpg: Chemoreceptor
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-7/rawdata/</p>T7_S488G3_22k12d110e.mrc,  Tilt Series (Pixel Size 0.98 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-7/rawdata/T7_S488G3_22k12d110e.mrc"
        > <i class="download icon"></i> Download </a></p>

        T7B2-1.mrc,  Reconstruction (Pixel Size 0.0 nm), 105.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-7/3dimage_21/T7B2-1.mrc"
        > <i class="download icon"></i> Download </a></p>

        T7B2-1sMirNad_0021.mrc,  Reconstruction (Pixel Size 0.0 nm), 105.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-7/3dimage_22/T7B2-1sMirNad_0021.mrc"
        > <i class="download icon"></i> Download </a></p>

        T7B2-1BB_28_part.pif,  Reconstruction (Pixel Size 0.0 nm), 352.3 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-7/3dimage_23/T7B2-1BB_28_part.pif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  file associated to 3D Image #21, 885.9 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-7/file_57/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  file associated to 3D Image #21, 885.9 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-7/file_58/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>