cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/ieda/312425
title: Processed ship-based Navigation Data  from the Drake Passage acquired during the Nathaniel B. Palmer expedition NBP0805 (2008)

description: This data set was acquired with a ship-based Navigation system during Nathaniel B. Palmer expedition NBP0805 conducted in 2008 (Chief Scientist: Dr. Ian Dalziel). These data files are of MGDS:Nav format and include Primary Navigation data and were processed after data collection. Data were acquired as part of the project(s): Central Scotia Sea floor and the Drake Passage deep ocean current gateway and Glacial radiocarbon contstraints from Drake Passage deep-sea corals, and funding was provided by NSF grant(s): ANT06-36787 and ANT06-36850.
DOI: 10.1594/ieda/311196
title: Processed ship-based Navigation Data acquired during the Eltanin expedition ELT20 (1965)

description: This data set was acquired with a ship-based Navigation system during Eltanin expedition ELT20 conducted in 1965 (Chief Scientist: Dr. Albert P. Crary). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection.
DOI: 10.1594/ieda/315169
title: Ship-based Trackline Geophysical Data (MGD77) acquired during the Robert D. Conrad expedition RC2114 (1978)

description: This data set was acquired with a ship-based Echosounder, Magnetometer, and Gravimeter during Robert D. Conrad expedition RC2114 conducted in 1978 (Chief Scientist: Dr. John Diebold). These data files are of MGD77 format and include Magnetic Field, Gravity Field, and Singlebeam Bathymetry data that were processed after data collection. Data were acquired as part of the project(s): Norwegian Sea - The Application of Multichannel Seismic Reflection/Refraction Techniques to Define the Crustal Structure of the Norwegian Margin and the Norwegian-greenland Sea., and funding was provided by NSF grant(s): DPP78-05733.
DOI: 10.1594/ieda/311198
title: Processed ship-based Navigation Data acquired during the Eltanin expedition ELT21 (1965)

description: This data set was acquired with a ship-based Navigation system during Eltanin expedition ELT21 conducted in 1965 (Chief Scientist: Dr. George R. Toney). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection.
DOI: 10.1594/ieda/312445
title: Processed ship-based Navigation Data  acquired during the Nathaniel B. Palmer expedition NBP9208 (1992)

description: This data set was acquired with a ship-based Navigation system during Nathaniel B. Palmer expedition NBP9208 conducted in 1992 (Chief Scientist: Dr. Carol Raymond). These data files are of MGDS:Nav format and include Primary Navigation data and were processed after data collection. Data were acquired as part of the project(s): Marie Byrd Margin: Early Seafloor Spreading History, and funding was provided by NSF grant(s): OPP90-18742.
DOI: 10.1594/ieda/314794
title: Processed ship-based Navigation Data  from the Pacific Ocean acquired during the Laurence M. Gould expedition LMG0509 (2005)

description: This data set was acquired with a ship-based Navigation system during Laurence M. Gould expedition LMG0509 conducted in 2005 (Investigator(s): Dr. Dave Leger). These data files are of MGDS:Nav format and include Primary Navigation data and were processed after data collection. Data were acquired while the Laurence M. Gould was in transit.
DOI: 10.1594/ieda/321075
title: Ship-based Trackline Geophysical Data (MGD77) from the Southern Ocean acquired during the Nathaniel B. Palmer expedition NBP1310 (2013)

description: This data set was acquired with a ship-based Knudsen 320BR Subbottom Seismic system, Gravimeter, and Navigation system during Nathaniel B. Palmer expedition NBP1310 conducted in 2013 (Chief Scientist: Dr. Kathryn Smith). These data files are of MGD77 format and include Bathymetry, Gravity Free Air Anomaly, Navigation, and Gravity Field data and were processed after data collection.
DOI: 10.1594/ieda/307972
title: Underway Hydrographic, Weather and Ship-state Data (JGOFS) from Laurence M. Gould expedition LMG0301 (2003)

description: This data set was acquired with a ship-based Fluorometer, Knudsen 320BR Echosounder Sonar, Navigation system, Meteorological Sensor, and Thermosalinograph during Laurence M. Gould expedition LMG0301 conducted in 2002 (Chief Scientist: Dr. Hugh Ducklow). These data files are of JGOFS format and include Meteorological, Navigation, Infrared Radiation, Bathymetry, Conductivity, Fluorescence, Visible Radiation, Temperature, and Salinity data. This data set was created from calibrated data decimated at 1-minute intervals. Several fields are derived measurements from more than a single raw input. Data were acquired as part of the project(s): Long-Term Ecological Research on the Antarctic Marine Ecosystem: An Ice-Dominated Environment (LTER).
DOI: 10.1594/ieda/314817
title: Ship-based Trackline Geophysical Data (MGD77) from the Exmouth Plateau acquired during the Maurice Ewing expedition EW0113 (2001)

description: This data set was acquired with a ship-based Geometrics G-886 Magnetometer, BellAerospace BGM-3 Gravimeter, and Atlas Hydrosweep DS2 Multibeam Sonar system during Maurice Ewing expedition EW0113 conducted in 2001 (Chief Scientist: Dr. Neal Driscoll). These data files are of MGD77 format and include Gravity Field, Magnetic Field, and Singlebeam Bathymetry data and were processed after data collection. Data were acquired as part of the project(s): Geophysical Investigation of the Gulf of Aden: Determining How Hotspot Proximity Affects Tectonic, Magmatic and Stratigraphic Development of Conjugate Margin, and funding was provided by NSF grant(s): OCE02-96103, OCE99-11877, OCE99-11962, and OCE99-12007.
DOI: 10.5281/zenodo.12785706
title: Benchmarking computation methods to identify spatially variable genes and peaks

description: Spatially resolved transcriptomics offers unprecedented insight by enabling the profiling of gene expression within the intact spatial context of cells, effectively adding a new and essential dimension to data interpretation. To efficiently detect spatial structure of interest, an essential step in analyzing such data involves identifying spatially variable genes. Despite researchers having developed several computational methods to accomplish this task, the lack of a comprehensive benchmark evaluating their performance remains a considerable gap in the field. Here, we present a systematic evaluation of 14 methods using 60 simulated datasets generated by four different simulation strategies, 12 real-world transcriptomics, and three spatial ATAC-seq datasets. We find that spatialDE2 consistently outperforms the other benchmarked methods, and Moran’s I achieves competitive performance in different experimental settings. Moreover, our results reveal that more specialized algorithms are needed to identify spatially variable peaks.
DOI: 10.15468/dl.h3y4n2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.138184 -34.21528, 148.138184 -34.217525, 148.144922 -34.217525, 148.144922 -34.21528, 148.138184 -34.21528))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070569-240626123714530/datasets/export for details.
DOI: 10.1594/ieda/318654
title: Ship-based Trackline Geophysical Data (MGD77) from the Ross Sea acquired during the Nathaniel B. Palmer expedition NBP1201 (2011)

description: This data set was acquired with a ship-based Gravimeter and Subbottom Profiler during Nathaniel B. Palmer expedition NBP1201 conducted in 2011 (Chief Scientist: Dr. Dennis McGillicuddy). These data files are of MGD77 format and include Bathymetry, Gravity (Field and Free Air Anomaly) data that were processed during the cruise
DOI: 10.1594/ieda/321751
title: Near-bottom Magnetics Data from the Juan de Fuca Spreading Center - Endeavour Segment acquired with ROV Jason II during Atlantis expedition AT18-09 (2011)

description: This data set was acquired with a Honeywell HMR2300 Magnetometer on the ROV Jason II during Atlantis expedition AT18-09 conducted in 2011 (Chief Scientist: Dr. H. Paul Johnson; Investigator(s): Dr. Maurice Tivey, Paul Johnson, and Dr. Mike Hutnak). These data files are of Text File (ASCII) format and include Magnetic Field data that have not been processed. Data were acquired as part of the project(s): Constraining Sub-surface Fluid Circulation at the RAVEN Hydrothermal Field, Endeavour Ridge, and funding was provided by NSF grant(s): OCE10-37840 and OCE10-37870. This data was cited by Tivey et al., 2014 and Salmi et al., 2014.
DOI: 10.1594/ieda/310842
title: Processed ship-based Navigation Data acquired during the Robert D. Conrad expedition RC1714 (1974)

description: This data set was acquired with a ship-based Navigation system during Robert D. Conrad expedition RC1714 conducted in 1974 (Chief Scientist: Dr. Steve Cande). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection. Funding was provided by NSF grant(s): N00014-67-A-0108-0004.
DOI: 10.1594/ieda/315870
title: Processed CTD Data from the Larsen Ice Shelf, Antarctica acquired during the Nathaniel B. Palmer expedition NBP1001 (2010)

description: This data set was acquired with a Sea-Bird SBE-9 CTD during Nathaniel B. Palmer expedition NBP1001 conducted in 2010 (Chief Scientist: Dr. Eugene Domack). These data files are of ASCII format and include Temperature and Sound Velocity data and were processed after data collection. Data were acquired as part of the project(s): Collaborative Research in IPY: Abrupt Environmental Change in the LARsen Ice Shelf System, Antarctica (LARISSA), and funding was provided by NSF grant(s): ANT07-32467.
DOI: 10.5281/zenodo.8291036
title: Benchmarking computation methods to identify spatially variable genes and peaks

description: Spatially resolved transcriptomics offers unprecedented insight by enabling the profiling of gene expression within the intact spatial context of cells, effectively adding a new and essential dimension to data interpretation. To efficiently detect spatial structure of interest, an essential step in analyzing such data involves identifying spatially variable genes. Despite researchers having developed several computational methods to accomplish this task, the lack of a comprehensive benchmark evaluating their performance remains a considerable gap in the field. Here, we present a systematic evaluation of 14 methods using 60 simulated datasets generated by four different simulation strategies, 12 real-world transcriptomics, and three spatial ATAC-seq datasets. We find that spatialDE2 consistently outperforms the other benchmarked methods, and Moran’s I achieves competitive performance in different experimental settings. Moreover, our results reveal that more specialized algorithms are needed to identify spatially variable peaks.
DOI: 10.1594/ieda/317654
title: Underway Hydrographic, Weather and Ship-state Data (JGOFS) from Nathaniel B. Palmer expedition NBP1103 (2011)

description: This data set was acquired with a ship-based Echosounder Sonar, Fluorometer, Thermosalinograph, Navigation system, and Meteorological Sensor during Nathaniel B. Palmer expedition NBP1103 conducted in 2011 (Chief Scientist: Dr. Laura Robinson). These data files are of JGOFS format and include Visible Radiation, Navigation, Conductivity, Salinity, Meteorological, Temperature, Infrared Radiation, Fluorescence, and Bathymetry data. This data set was created from calibrated data decimated at 1-minute intervals. Several fields are derived measurements from more than a single raw input. Data were acquired as part of the project(s): Collaborative Research: Historic Perspectives on Climate and Biogeography from Deep-Sea Corals in the Drake Passage, and funding was provided by NSF grant(s): ANT09-44474.
DOI: 10.1594/ieda/315218
title: Ship-based Trackline Geophysical Data (MGD77) acquired during the Robert D. Conrad expedition RC2515 (1984)

description: This data set was acquired with a ship-based Gravimeter and SeaBeam Classic Multibeam Sonar system during Robert D. Conrad expedition RC2515 conducted in 1984 (Chief Scientist: Dr. Robert Feden). These data files are of MGD77 format and include Singlebeam Bathymetry and Gravity Field data that were processed after data collection.
DOI: 10.1594/ieda/314905
title: Ship-based Trackline Geophysical Data (MGD77) acquired during the Maurice Ewing expedition EW9502 (1995)

description: This data set was acquired with a ship-based Atlas Hydrosweep DS Multibeam Sonar system and BellAerospace BGM-3 Gravimeter during Maurice Ewing expedition EW9502 conducted in 1995 (Chief Scientist: Dr. Kirk McIntosh). These data files are of MGD77 format and include Singlebeam Bathymetry and Gravity Field data and were processed after data collection. Data were acquired as part of the project(s): Investigation of Upper Plate Response to Subducting Plate Morphology and Seamounts as Subduction Zone Asperities: Cooperative German, Costa Rican, and United States Project, and funding was provided by NSF grant(s): OCE94-02091.
DOI: 10.1594/ieda/315953
title: Raw XCTD Expendable Probe Data from the Antarctic Peninsula acquired during the Laurence M. Gould expedition LMG1001 (2009)

description: This data set was acquired with a Sippican MK21 XCTD Expendable Probe during Laurence M. Gould expedition LMG1001 conducted in 2009 (Chief Scientist: Dr. Doug Martinson). These data files are of Sippican MK21 Export Data File format and include Salinity and Temperature data that have not been processed. Data were acquired as part of the project(s): Long-Term Ecological Research on the Antarctic Marine Ecosystem: An Ice-Dominated Environment (LTER).
DOI: 10.1594/ieda/314703
title: Processed ship-based Navigation Data  from the Drake Passage acquired during the Laurence M. Gould expedition LMG0504 (2005)

description: This data set was acquired with a ship-based SeaBeam 2112 Navigation system during Laurence M. Gould expedition LMG0504 conducted in 2005 (Chief Scientist: Dr. John Hildebrand). These data files are of MGDS:Nav format and include Primary Navigation data and were processed after data collection. Data were acquired as part of the project(s): Mysticete Whale Acoustic Census in the GLOBEC West Antarctic Project Area, and funding was provided by NSF grant(s): ANT99-10007.
DOI: 10.1594/ieda/314898
title: Ship-based Trackline Geophysical Data (MGD77) acquired during the Maurice Ewing expedition EW9410 (1994)

description: This data set was acquired with a ship-based Atlas Hydrosweep DS Multibeam Sonar system, Varian Inc. V75 Magnetometer, and BellAerospace BGM-3 Gravimeter during Maurice Ewing expedition EW9410 conducted in 1994 (Chief Scientist: Dr. Simon Klemperer). These data files are of MGD77 format and include Magnetic Field, Gravity Field, and Singlebeam Bathymetry data and were processed after data collection. Data were acquired as part of the project(s): Crustal Evolution of the Bering Shelf-Chukchi Sea, and funding was provided by NSF grant(s): EAR93-16573, EAR93-17087, EAR93-17142, and EAR93-17531.
DOI: 10.5281/zenodo.12785822
title: Systematic benchmarking of computational methods to identify spatially variable genes: Part 1

description: Spatially resolved transcriptomics offers unprecedented insight by enabling the profiling of gene expression within the intact spatial context of cells, effectively adding a new and essential dimension to data interpretation. To efficiently detect spatial structure of interest, an essential step in analyzing such data involves identifying spatially variable genes. Despite researchers having developed several computational methods to accomplish this task, the lack of a comprehensive benchmark evaluating their performance remains a considerable gap in the field. Here, we present a systematic evaluation of 14 methods using 60 simulated datasets generated by four different simulation strategies, 12 real-world transcriptomics, and three spatial ATAC-seq datasets. We find that spatialDE2 consistently outperforms the other benchmarked methods, and Moran’s I achieves competitive performance in different experimental settings. Moreover, our results reveal that more specialized algorithms are needed to identify spatially variable peaks.
DOI: 10.1594/ieda/313023
title: Processed ship-based Navigation Data acquired during the Vema expedition V1811 (1962)

description: This data set was acquired with a ship-based Navigation system during Vema expedition V1811 conducted in 1962 (Chief Scientist: Dr. Marcus Langseth). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection.
DOI: 10.1594/ieda/324319
title: Processed Navigation Data from the Southern Ocean acquired during R/V Nathaniel B. Palmer expedition NBP1608 (2016)

description: This data set was acquired with a  Navigation System during R/V Nathaniel B. Palmer expedition NBP1608 conducted in 2016 (Chief Scientist: Dr. Bethany Jenkins, Investigator: Dr. Bethany Jenkins). These data files are of Text File (ASCII) format and include Navigation data that were processed after acquisition. Data were acquired as part of the project(s): Collaborative Research: Investigating Iron-inding Ligands in Southern Ocean Diatom Communities: The Role of Diatom-Bacteria Associations. Funding was provided by NSF award(s): OPP14-43474.
DOI: 10.1594/ieda/314754
title: Processed ship-based Navigation Data  from the Drake Passage acquired during the Laurence M. Gould expedition LMG0703 (2007)

description: This data set was acquired with a ship-based Navigation system during Laurence M. Gould expedition LMG0703 conducted in 2007 (Investigator(s): Dr. Dave Leger). These data files are of MGDS:Nav format and include Primary Navigation data and were processed after data collection. Data were acquired while the Laurence M. Gould was in transit.
DOI: 10.1594/ieda/315507
title: Ship-based Trackline Geophysical Data (MGD77) acquired during the Vema expedition V3203 (1974)

description: This data set was acquired with a ship-based Gravimeter, Echosounder Sonar, and Magnetometer during Vema expedition V3203 conducted in 1974 (Chief Scientist: Dr. Paul Jeffrey Fox). These data files are of MGD77 format and include Magnetic Field, Singlebeam Bathymetry, and Gravity Field data and were processed after data collection.
DOI: 10.1594/ieda/324320
title: Raw Underway Hydrographic and Weather and Ship-state Data (JGOFS) from the Southern Ocean acquired during R/V Nathaniel B. Palmer expedition NBP1608 (2016)

description: This data set was acquired with a  Meteorological Sensor, Echosounder, Thermosalinograph, Navigation System and  Flourometer during R/V Nathaniel B. Palmer expedition NBP1608 conducted in 2016 (Chief Scientist: Dr. Bethany Jenkins, Investigator: Dr. Bethany Jenkins). These data files are of JGOFS (ASCII) format and include Bathymetry, Conductivity, Fluorescence, Infrared Radiation, Meteorological, Navigation, Salinity, Temperature and Visible Radiation data that have not been processedThis data set was created from calibrated data decimated at 1-minute intervals. Several fields are derived measurements from more than a single raw input. Data were acquired as part of the project(s): Collaborative Research: Investigating Iron-inding Ligands in Southern Ocean Diatom Communities: The Role of Diatom-Bacteria Associations. Funding was provided by NSF award(s): OPP14-43474.
DOI: 10.1594/ieda/316250
title: Processed ship-based Navigation Data (ASCII format) from the East Pacific Rise at 9N acquired during the Atlantis expedition AT15-58 (2009)

description: This data set was acquired with a ship-based Navigation system during Atlantis expedition AT15-58 conducted in 2009 (Chief Scientist: Dr. Scott Nooner). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection. Data were acquired as part of the project(s): Establishing a Long-Term Geodetic Network at the East Pacific Rise Ridge 2000 Integrated Studies Site, Testing Models of Magma Movement along the East Pacific Rise using Combined Geodetic and Numerical Experiments, and SGER: A Seafloor Camera System for Flow Rate Measurements in Black Smoker Vents, and funding was provided by NSF grant(s): OCE04-26575, OCE06-47840, and OCE09-17955.
DOI: 10.1594/ieda/316961
title: Raw ship-based Navigation Data from the Izu-Bonin-Mariana Subduction Zone acquired during the Sumner expedition SU10-2 (2010)

description: This data set was acquired with a ship-based Navigation system during Sumner expedition SU10-2 conducted in 2010 (Chief Scientist: Dr. Andrew Armstrong; Investigator(s): Dr. Andrew Armstrong and Dr. James Gardner). These data files are of Text File (ASCII) format and include Navigation data that have not been processed. Data were acquired as part of the project(s): Mapping of the Mariana Trench (Law of the Sea).
DOI: 10.1594/ieda/316979
title: Processed ship-based Navigation Data (version 2) acquired during the Surveyor expedition OPRS9302 (1993)

description: This data set was acquired with a ship-based Navigation system during Surveyor expedition OPRS9302 conducted in 1993 (Chief Scientist: Dr. Kristin M. M. Rohr). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection. Data were acquired as part of the project(s): VENTS Program: Phase I: Northeast Pacific.
DOI: 10.1594/ieda/317041
title: Processed ship-based Navigation Data  from the Drake Passage acquired during the Laurence M. Gould expedition LMG1008 (2010)

description: This data set was acquired with a ship-based Navigation system during Laurence M. Gould expedition LMG1008 conducted in 2010 (Investigator(s): Dr. Dave Leger). These data files are of MGDS:Nav format and include Primary Navigation data and were processed after data collection. Data were acquired while the Laurence M. Gould was in transit.
DOI: 10.1594/ieda/305703
title: Raw ship-based Multibeam Sonar Data from the Exmouth Plateau Shelf acquired during R/V Maurice Ewing expedition EW0113 (2001)

description: This data set was acquired with a ship-based Atlas Hydrosweep DS2 Multibeam Sonar system during Maurice Ewing expedition EW0113 conducted in 2001 (Chief Scientist: Dr. Neal Driscoll). These data files are of MBSystem Compatible format and include Swath Bathymetry data that have not been processed. Data were acquired as part of the project(s): Geophysical Investigation of the Gulf of Aden: Determining How Hotspot Proximity Affects Tectonic, Magmatic and Stratigraphic Development of Conjugate Margin, and funding was provided by NSF grant(s): OCE02-96103, OCE99-11877, OCE99-11962, and OCE99-12007.
DOI: 10.1594/ieda/309716
title: Processed Sediment Geochemistry and Particle Flux Time Series Data from the East Pacific Rise at 9N acquired during New Horizon expedition TCS06NH (2006)

description: This data set was acquired during New Horizon expedition TCS06NH conducted in 2006 (Chief Scientist: Dr. James Cowen; Investigator: Dr. Christopher German). The data file is in Microsoft Excel format and includes Sediment Geochemistry and Particle Flux time series data that was processed after collection. The data was acquired as part of the projects: A Ridge 2000 Time Critical Studies Response Cruise to an Eruptive Event; Traps and Pumps for Hydrothermal Sampling; Oceanographic and Topographic Influences on Dispersal of Hydrothermal Vent Species; Continuation Time-Series Responses to a Mid-Ocean Ridge Volcanic Event: Juan de Fuca and Gorda Ridges; and, ABR: Detailed Mapping and Modeling of Submarine Lava Flows and Emplacement Processes: The East Pacific Rise 9 deg 25'N to 9 deg 55'N. Funding was provided by NSF grants: OCE02-22069, OCE04-24953, and OCE05-25863.
DOI: 10.6084/m9.figshare.26633010.v1
title: Additional file 5 of Bovine oviductal organoids: a multi-omics approach to capture the cellular and extracellular molecular response of the oviduct to heat stress

description: Additional file 5: Table S5. Summary of sequence reads for oviductal organoid EVs mapped to the bovine reference genome and annotated against bovine miRNAs listed in the mirBase database.