cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27959742.v1
title: <b>JV agg</b>-Source Data.xlsx

description: The shortwave infrared (SWIR) region is an ideal spectral window for next-generation bioimaging to harness improved penetration and reduced phototoxicity. SWIR spectral activity may also be accessed via supramolecular dye aggregation. Unfortunately, development of dye aggregation remains challenging. We propose a crystal-aided aggregate synthesis (CAASH) approach to introduce a layer of rationality for the development of J-aggregate and the successful development of a unique water-soluble SWIR JV-aggregate with a bisbenzannulated silicon rhodamine scaffold (ESi5). The resulting SWIR-aggregates exhibit excellent stabilities toward organic solvents, pH, sonication, photobleaching, thiols, and endogenous oxidative species. Notably, the aggregates have a high structure-dependent melting temperature of ca. 330-335 K. In fact, the heating/annealing process can be exploited to reduce aggregation disorder. The aggregates are biocompatible and have tremendous potential in in vivo fluorescence and photoacoustic imaging and more. This work establishes the prototypic use of xanthenoid dyes to assemble SWIR aggregate with bioimaging implications.
DOI: 10.17632/2yydm8jx3n
title: Universal Biophysical Synthesis

description: Finding God in Nature.

Natural Theology (also catholic moral realism.)

2021.

All rights reserved.
Safe Creative Code: 2110309664846
DOI: 10.17632/tm72fkfxd5
title: Helmet Wearing Image Dataset

description: A comprehensive collection of 28736 high-resolution images that meticulously document the usage of helmets in real-world scenarios. This dataset offers a diverse range of images, encompassing both correctly worn helmets and instances of incorrect helmet usage. These images were captured using mobile phones, ensuring a practical and accessible perspective on helmet compliance.
DOI: 10.6084/m9.figshare.19137194.v1
title: Supplemental materials 3: MIFlowCyt checklist of Filtration experiments, “Removal of platelets from blood plasma to improve the quality of extracellular vesicle research”

description: Supplemental materials 3: MIFlowCyt checklist of Filtration experiments, “Removal of platelets from blood plasma to improve the quality of extracellular vesicle research”
DOI: 10.6084/m9.figshare.19582786.v1
title: Windthrow events in the forest zone of Western Siberia in 2001-2020

description: The dataset contains spatially explicit information on windthrow events in the forest zone of Western Siberia for the period 2001-2020. Windthrow data was obtained from Landsat, Sentinel-2 satellite images, Global Forest Change data, and high-resolution satellite images from open map services. To define the dates and time of storm events, weather stations observations, images from meteorological satellites, and information on hazardous weather events was used. The compiled database includes 25774 elementary damaged areas (singlepart polygons), which are grouped to 265 different windthrow areas (multipart polygons). These windthrow areas are associated with 158 different storm events. The data is provided in .shp files. ArcMap and QGIS projects have been created for viewing the data. Attribute information on each windthrow area includes the type of weather event causing them (squall, tornado or non-convective storm), event certainty degree, storm event date (or date range), data sources for windthrow delineation and event type determination, geometric characteristics (area, length, mean and maximum width), and also information from the nearest weather station and external URL (if available).
DOI: 10.6084/m9.figshare.28845671.v1
title: Data for " Green Production of Ammonia Gas and Fertilizers via Upcycling of Soiled Diapers by <i>Zophobas morio</i>"

description: Soiled diapers, being the third-largest single consumer item in landfills and whose plastic components are estimated to take hundreds of years to decompose, negatively impact the environment. Here, experiments reveal that <i>Zophobas morio</i> larvae (superworms) can consume, digest, and upcycle soiled diapers into ammonia gas and fertilizers.
DOI: 10.6084/m9.figshare.3547539.v1
title: Appendix A. Statistical details for article examples in a general hypothesis-testing framework for stable isotope ratios in ecological studies.

description: Statistical details for article examples in a general hypothesis-testing framework for stable isotope ratios in ecological studies.
DOI: 10.17632/2xd64nsvzg
title: Do green policies enhance short-term economic growth? Assessing EU Recovery and Resilience Plans through the lens of Sustainable Development Goals

description: The zip file "replication folder" includes all relevant code and data necessary to replicate the quantitative results, figures and tables presented in the manuscript "Do green policies enhance short-term economic growth? Assessing EU Recovery and Resilience Plans through the lens of Sustainable Development Goals" and its appendices.
The zip file "figures" contains high-resolution versions of the figures included in the manuscript and its appendices.
DOI: 10.17632/3bm2nct8f6
title: Data for: The mixing reactions of mineral dusts with typical anthropogenic pollutants: A mechanism study

description: The data are the structures of the key species in the mixing reactions.
DOI: 10.17632/9vmgdgtmh4
title: Data for: Gender Differences in Performance under Time Constraint: Evidence from Chess Tournaments

description: Also available online.
DOI: 10.17632/t82zgdcpfk
title: Data for: Holocene relative sea-level changes in the Malay Peninsula

description: This file contains new and previously published sea-level index points from the Malay Peninsula.
DOI: 10.6084/m9.figshare.1213775.v1
title: Urban Tree Canopy and Environmental Justice

description: A compilation of Census and land cover variables for examining environmental justice issues as the tract and block group levels. Information was compiled for the following cities: Baltimore, Los Angeles, New York City, Philadelphia, Raleigh, and Washington DC.
DOI: 10.6084/m9.figshare.16571378.v2
title: Centromere protein E as a novel biomarker and potential therapeutic target for retinoblastoma

description: Retinoblastoma is the most common intraocular malignancy during childhood. Currently, there is no effective treatment for metastatic retinoblastoma. We investigated potential biomarkers of retinoblastoma by utilizing three datasets from a public database. Functional enrichment analysis, including gene ontology, Kyoto encyclopedia of genes and genomes, gene set enrichment analysis and variation analysis, suggested that differentially expressed genes in retinoblastoma were enriched in accelerated cell cycle events. Protein-protein interaction analysis constructed a network consisting of six hub genes, including <i>benzimidazoles 1 (BUB1), cyclin dependent kinase 1 (CDK1), centromere protein E (CENPE), kinesin family member 20A (KIF20A), PDZ binding kinase (PBK), and targeting protein for xklp2 (TPX2)</i>. Drug sensitivity analysis showed that nelarabine was positively correlated with five hub genes. All six genes were expressed differently in six immune subtypes and were positively correlated with stemness indices in most human cancer types. Since <i>CENPE</i> is the least known hub gene in retinoblastoma, we further analyzed the potential non-coding RNAs and transcription factors that regulate <i>CENPE</i> and built interaction networks of competing endogenous RNA and transcription factors. Immune cell infiltration, especially by plasma and B cells, was enhanced in samples with high <i>CENPE</i> expression. Pan-cancer analysis illustrated that <i>CENPE</i> was highly expressed in a wide range of human tumors. <i>In vitro</i> validation revealed that <i>CENPE</i> was significantly upregulated at both the mRNA and protein levels in retinoblastoma cells. In conclusion, <i>CENPE</i>, along with other hub genes, could serve as a potential biomarker and intervention target for retinoblastoma.
DOI: 10.17632/swvbf7czm3
title: EXTEND abro by prior dupi response

description: supplemental data for dupi switch manuscript
DOI: 10.6084/m9.figshare.1057745.v2
title: ALLMAPS supporting data: Medicago genome assembly

description: Supporting data for ALLMAPS. The data set includes Medicago de novo genomic scaffolds, a combination of three maps including optical map, genetic map and synteny to chickpea. ALLMAPS was run to produce pseudomolecules based on these input data. Weighting scheme for ALLMAPS was optical map (weight=3) &gt; genetic map (weight=2) &gt; synteny (weight=1). <strong>Command</strong> python -m jcvi.assembly.allmaps path Mt.bed scaffolds.fasta --links=40 <strong>Changelog</strong> - 6/7/2015, updated run.sh script
DOI: 10.6084/m9.figshare.29064476.v2
title: Supplementary Documents- Assessing the Influence of Innovation Characteristics on the Implementation Process of an Optimised Tuberculosis Diabetes Integrated Care Package (Opt TBD) -A Mixed Method Study Protocol

description: This repository contains supplementary materials used in the conduct of "Assessing the Influence of Innovation Characteristics on the Implementation Process of an Optimised Tuberculosis Diabetes Integrated Care Package (Opt TBD) -A Mixed Method Study Protocol". These documents are provided to enhance transparency, facilitate replication, and support further research. The contents include:Informed Consent Forms<br>These forms were used to obtain voluntary, informed consent from participants prior to their involvement in the study. They outline the study's purpose, procedures, risks and benefits, confidentiality safeguards, and the participant's right to withdraw at any time.Participant Information Sheets<br>These sheets were shared with participants to provide detailed information about the study, including its background, what participation entails, data handling procedures, and contact details for further inquiries or concerns.Questionnaires<br>These structured tools were used to collect quantitative data from participants. The questionnaires include questions relevant to the study objectives and were developed based on relevant literature and expert input.Topic Guides (Interviews)<br>These guides were used during in-depth interviews or focus group discussions to ensure consistency across sessions. They contain open-ended questions aligned with the study’s aims and were pilot-tested or reviewed for appropriateness.Participant Demographic Forms<br>These forms were used to collect background information (e.g., age, gender, education level, occupation) to contextualize participant responses and describe the study population.All materials were approved by the relevant ethics review board(s) and were developed with cultural and contextual appropriateness in mind. These documents are shared for academic and educational purposes and should be adapted with caution to suit other settings. <br>
DOI: 10.6084/m9.figshare.5841519.v1
title: Supplementary Material for: Use of Mobile Devices to Measure Outcomes in Clinical Research, 2010–2016: A Systematic Literature Review

description: <b><i>Background:</i></b> The use of mobile devices in clinical research has advanced substantially in recent years due to the rapid pace of technology development. With an overall aim of informing the future use of mobile devices in interventional clinical research to measure primary outcomes, we conducted a systematic review of the use of and clinical outcomes measured by mobile devices (mobile outcomes) in observational and interventional clinical research. <b><i>Method:</i></b> We conducted a PubMed search using a range of search terms to retrieve peer-reviewed articles on clinical research published between January 2010 and May 2016 in which mobile devices were used to measure study outcomes. We screened each publication for specific inclusion and exclusion criteria. We then identified and qualitatively summarized the use of mobile outcome assessments in clinical research, including the type and design of the study, therapeutic focus, type of mobile device(s) used, and specific mobile outcomes reported. <b><i>Results:</i></b> The search retrieved 2,530 potential articles of interest. After screening, 88 publications remained. Twenty-five percent of the publications (<i>n</i> = 22) described mobile outcomes used in interventional research, and the rest (<i>n</i> = 66) described observational clinical research. Thirteen therapeutic areas were represented. Five categories of mobile devices were identified: (1) inertial sensors, (2) biosensors, (3) pressure sensors and walkways, (4) medication adherence monitors, and (5) location monitors; inertial sensors/accelerometers were most common (reported in 86% of the publications). Among the variety of mobile outcomes, various assessments of physical activity were most common (reported in 74% of the publications). Other mobile outcomes included assessments of sleep, mobility, and pill adherence, as well as biomarkers assessed using a mobile device, including cardiac measures, glucose, gastric reflux, respiratory measures, and intensity of head-related injury. <b><i>Conclusion:</i></b> Mobile devices are being widely used in clinical research to assess outcomes, although their use in interventional research to assess therapeutic effectiveness is limited. For mobile devices to be used more frequently in pivotal interventional research – such as trials informing regulatory decision-making – more focus should be placed on: (1) consolidating the evidence supporting the clinical meaningfulness of specific mobile outcomes, and (2) standardizing the use of mobile devices in clinical research to measure specific mobile outcomes (e.g., data capture frequencies, placement of device). To that aim, this manuscript offers a broad overview of the various mobile outcome assessments currently used in observational and interventional research, and categorizes and consolidates this information for researchers interested in using mobile devices to assess outcomes in interventional research.
DOI: 10.6084/m9.figshare.11865603.v1
title: Supplementary Material for: Abnormal Baseline Lab Results Rarely Lead to Treatment Modification for Patients on Isotretinoin

description: <b><i>Background:</i></b> Treatment modification and clinical course for patients initiating isotretinoin with abnormal baseline lab results is currently unknown, and no recommendations exist for monitoring this patient group. <b><i>Methods:</i></b> We performed a retrospective review of patients prescribed isotretinoin for acne from 2008 to 2016 at Brigham and Women’s and Massachusetts General Hospitals to investigate the characteristics, clinical implications, and management of patients initiating isotretinoin for acne with baseline laboratory abnormalities. <b><i>Results:</i></b> We identified a low rate (7.2%) of treatment modification, including interruption (3.6%) and early termination (3.6%), during isotretinoin therapy due to lab abnormalities for patients with baseline lab abnormalities. Abnormal baseline total cholesterol, triglyceride, and liver function tests did not predict management changes, as only 2 of 10 total treatment modifications were due to a lab result that was abnormal at baseline. Treatment modification was driven by ALT elevation not present at baseline that occurred in patients with liver comorbidities. <b><i>Conclusion:</i></b> Emphasizing relevant comorbidities, including hepatic disease or alcohol use, to inform our monitoring may be a superior predictor of abnormalities during treatment, as our work demonstrates that the value of baseline lab data prior to isotretinoin is unclear.
DOI: 10.6084/m9.figshare.12118044.v1
title: Supplemental Table 1.pdf

description: Descriptive characteristics of patients with chronic kidney disease broken down by sex and age.
DOI: 10.26188/5da55550a40e9
title: EPiC database - Hot rolled structural steel

description: This material is part of the free Environmental Performance in Construction (EPiC) Database. The EPiC Database contains embodied environmental flow coefficients for 250+ construction materials using a comprehensive hybrid life cycle inventory approach.<br><br>Steel is a ferrous metal and is an alloy of iron and carbon, as well as potential other elements. It has a very high tensile strength. Steel has been used in the construction industry for over a century.<br><br>The core material for making steel is iron, which is found in iron ore. Iron is extracted from iron ore in blast furnaces through the smelting process, while controlling for the content of carbon. The molten steel is usually further processed before being cast for its final use.<br><br>Steel is commonly used in the construction industry, mainly as a structural material. Hot rolled structural steel is used to produce a range of structural elements, such as reinforcement bars, I-beams and railroad tracks.
DOI: 10.6084/m9.figshare.1299452.v2
title: Open Access Journals 2014, Beall-list (not in DOAJ) subset

description: Prepared for "Idealism and Opportunism: The State of Open Access Journals," <em>Library Technology Reports</em>, 2015 (to appear later this year). Data on 6,948 journals and "journals" from Beall 2014 lists that don't appear in <em>DOAJ</em>. One row per journal, anonymized (no journal or publisher names). Data gathered by direct (visual) checking of journal sites. Article counts approximate in some cases. See data_key sheet for code explanations. Additional commentary in <em>Cites & Insights</em> 14:7 and 14:10.
DOI: 10.6084/m9.figshare.21032764.v1
title: Supplementary Data of Fig. S8

description: Supplementary data of Fig. S8
DOI: 10.6084/m9.figshare.23898783.v1
title: Dataset of the impacts of invasive alien species (IAS) in Brazil

description: This dataset summarizes the research on the impacts of Invasive Alien Species (IAS) documented in Brazil from 1981 to 2022 and was used to subsidize the Brazilian Platform on Biodiversity and Ecosystem Services (BPBES). Impacts of non-native plants and animals, but not microorganisms and fungi, on terrestrial and aquatic (freshwater and marine) environments were included in this review. Most of the literature reviewed consisted of published articles, plus a few book chapters, dissertations, theses, and reports. We found 1,003 records of ecological and economic impacts (970 negative and 33 positive) caused by 239 different species, as well as effects on people’s well-being.  <br>
DOI: 10.6084/m9.figshare.29196059.v1
title: java_unformatted_train.jsonl

description: The Hidden Cost of Readability: How Code Formatting Silently Consumes Your LLM Budget
DOI: 10.6084/m9.figshare.4516772.v3
title: German Migrant Letters Complete Corpus

description: This is a dataset used to visualise the correspondence of German-speaking migrants in the US between 1830 and 1970. <br> The Forschungsbibliothek Gotha holds most of the letters in hard copy along with some additional information which we have not digitised. We are thankful for having been granted extensive access and helpful advice by Monika Hasenmüller. Wolfgang Helbich started the collection in the 1980s and Ursula Lehmkuhl now administers it.<br><br>Visualisations of the data can be accessed here.<br><br>Publications drawing on this source:<br><br>Integration and Identities: The Effect of Time, Migrant Networks, and Political Crises on the Germans in the US, in <em>Comparative Studies in Society and History.</em><em><br></em><em>The Simultaneity of Feeling German and Being American: Analyzing 150 Years of Private Migrant Correspondence</em>, in <em><em>Migration Studies</em>.</em><em><br></em> Migrantische Netzwerke und Integration: Das transnationale Kommunikationsfeldsfeld deutscher Einwandererfamilien in den USA, in <em>Zeitschrift für vergleichende Politikwissenschaft</em><em>.</em>
DOI: 10.17632/5sc7njfcyn
title: Nation-wide open soil property maps of up to 100 cm depth for Sri Lanka

description: The first ever national level digital soil database of Sri Lanka. This dataset contains interpolated maps for 9 soil properties; pH, bulk density (gcm-3), cation exchange capacity (cmol+ kg–1), organic carbon content (%), volumetric moisture content (VMC) at 0.33 bars level (drainage upper limit – mm mm-1), VMC at 15 bars level (wilting point – mm mm-1), clay (%), sand (%) and silt content (%). The data are available at 5 different depths as 0-5 cm, 5-15 cm, 15-30 cm, 30-60 cm and 60-100 cm. Observed data from 122 locations that were distributed throughout the country were used for interpolation mapping. The choice of interpolation method can generate different results, therefore several interpolation methods were used in the interpolation process. The least Root Mean Square Error (RMSE), through the process of cross-validation or leaving-one-out of determined the final method used for mapping each property. For sand, silt and clay, the Radial Basis Function interpolation was used while all other properties were interpolated using the Empirical Bayesian Kriging method. The resolution of the interpolation maps is approximately 1 km. Other than the soil properties, standard error maps of respective properties were also made available. It can be used to explain the variation of the final results of simulation models. The dataset is mainly designed for process-based crop models, but it can be used for any soil-related studies in Sri Lanka.
DOI: 10.6084/m9.figshare.14597562.v1
title: Noisy Dataset

description: These are the time-averaged noisy datasets for both Newtonian and non-Newtonian simulations
DOI: 10.6084/m9.figshare.19166525.v1
title: NWPU-RESISC45

description: This is a public remote sensing image dataset.
DOI: 10.6084/m9.figshare.27835209.v1
title: GVHD Demo Data Basic

description: <pre>The data in this tutorial comes from a RAG-based bot that answers questions about the GVHD medical condition.<br><br>This tutorial is a subset of the [full demo](https://llmdocs.deepchecks.com/docs/qa-demo-gvhd-use-case) which will focus on version comparison using the Deepchecks platform.</pre>
DOI: 10.17632/wnc8s34x83
title: Organ donation

description: Organ donation
DOI: 10.6084/m9.figshare.11807400.v1
title: Extended_data_1.docx

description: <b>Eligibility criteria for</b><b>TwinsUK ExHiBITT</b>
DOI: 10.6084/m9.figshare.16926043.v1
title: GBS Data from Wilkerson et al., 2021

description: GBS data used in the research article titled, "Mapping the sex determination region in the <i>Salix</i> F<sub>1 </sub>hybrid common parent population confirms a ZW system in six diverse species" by Wilkerson et al., submitted to G3. The nine included hapmap files were used in an analysis of population structure of the entire population and the construction of parental linkage maps.