cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8ym7as
title: Occurrence Download

description: A dataset containing 1327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Tyria jacobaeae Linnaeus, 1758"
 ]
}

 The dataset includes 1327 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009593-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.12146271.v1
title: Keypress&DelayedAuditoryFeedback

description: Original data and Matalab analysis code for the findings described in the manuscript 'Rapid and accumulated modulation of action-effects on action'.
DOI: 10.6084/m9.figshare.21205304.v2
title: Supplementary material (data & R script) for the CIEES 2022 manuscript authored by B Stoyanovski, T Iliev, R Cesarec, R Filjar

description: A single ZIP file contains 119 Android smartphone sensors trajectory observations on the path in the city centre of Krapina, Croatia, as well as the R script for data aggregation, trajectory formation, analysis, and machine learning-based prediction model development, for the CIEES 2022 Conference manuscript. Trajectory observations were taken using AndroSensors smartphone application (https://play.google.com/store/apps/details?id=com.fivasim.androsensor&hl=en_US&gl=US), which collects obseravtion on the move and stores them into a CSV file. Content depends on the available smartphone sensors. Data sets supplied consist of observations of the following variables: ACCELEROMETER X (m/s²) ACCELEROMETER Y (m/s²) ACCELEROMETER Z (m/s²) GRAVITY X (m/s²) GRAVITY Y (m/s²) GRAVITY Z (m/s²) LINEAR ACCELERATION X (m/s²) LINEAR ACCELERATION Y (m/s²) LINEAR ACCELERATION Z (m/s²) GYROSCOPE X (rad/s) GYROSCOPE Y (rad/s) GYROSCOPE Z (rad/s) LIGHT (lux) MAGNETIC FIELD X (μT) MAGNETIC FIELD Y (μT) MAGNETIC FIELD Z (μT) ORIENTATION Z (azimuth °) ORIENTATION X (pitch °) ORIENTATION Y (roll °) PROXIMITY (i) ATMOSPHERIC PRESSURE (hPa) SOUND LEVEL (dB) LOCATION Latitude : LOCATION Longitude : LOCATION Altitude ( m) LOCATION Altitude-google ( m) LOCATION Altitude-atmospheric pressure ( m) LOCATION Speed ( Kmh) LOCATION Accuracy ( m) LOCATION ORIENTATION (°) Satellites in range Time since start in ms YYYY-MO-DD HH-MI-SS_SSS <br> The analysis and prediction model R script is developed by authors in the R environment for statistical computing (https://www.r-project.org/), using additional R libraries: trajr (https://cran.r-project.org/web/packages/trajr/index.html) and caret (https://topepo.github.io/caret/), among the others.
DOI: 10.6084/m9.figshare.25426027.v2
title: EMVA 1.0 - Amostra de 48 empresas

description: This research uses accounting data from a sample of 48 companies listed on B3 and the Ibovespa indicator to develop the reproduction schemes of the Brazilian economy between 2010 and 2021. The objective is to analyze the evolution of the condition of intersectoral balance and its relation with the variation in the average rate of profit in the period. An increase in intersectoral disproportion was observed between the companies in the sample, in addition to a drop in the average rate of profit in the years 2010 to 2015. Between 2016 and 2021, the relation between the two series seems to change. In particular, between 2016 and 2017, there was a recovery in the average rate of profit with an increase in intersectoral disproportion. Among the hypotheses that help to explain this behavior in the dynamics of the expanded reproduction of the sample of companies are: 1) the reduction in the constant capital of the companies in the sector of production of means of production, 2) the increase in the average rate of surplus value and 3) the advance of deforestation as a way of partially compensating for the increase in intersectoral disproportion. This last hypothesis seems to be associated with a process of self-colonization of the national territory, which would indicate a way in which it would be possible in the Brazilian economy for the increase in intersectoral disproportion and the increase in the average rate of profit to be compatible.
DOI: 10.6084/m9.figshare.3522029.v1
title: Appendix A. Results of the literature survey of productivity-diversity relationships, including information from each study on taxa studied, range of species richness, study locations, productivity measures, scale classifications and results of statistical analyses of productivity-diversity relationships (viewable and downloadable).

description: Results of the literature survey of productivity-diversity relationships, including information from each study on taxa studied, range of species richness, study locations, productivity measures, scale classifications and results of statistical analyses of productivity-diversity relationships (viewable and downloadable).
DOI: 10.6084/m9.figshare.9549584.v1
title: Crb-blast annotation of flat periwinkles pseudoreference transcriptome

description: File containing a detailed annotation of the flat periwinkles pseudoreference transcriptome based on the Swiss-prot database and L. saxatilis transcriptome
DOI: 10.6084/m9.figshare.21153442.v3
title: forward-facing 1

description: This data set is generated using the Coppelia Sim. The first forward-facing camera dataset is created using cameras attached to each robot and accessed programmatically. Each camera has 120o field of view. <br> The Video from each robot is cut into sequences of 75 frames of size 64x64 pixels. This low resolution is used to decrease the data dimensionality. The images are converted to grayscale for the same reason. <br>
DOI: 10.6084/m9.figshare.19499369.v1
title: patches and local annotations, slide 043, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.28601156.v2
title: Alignment, Fungal Planet - Lichenohendersonia cetrariae

description: Concatenated alignment of ITS, LSU and tef1a regions.
DOI: 10.6084/m9.figshare.6886376.v3
title: The <i>Inocybe geophylla</i> group in North America: a revision of the lilac species surrounding <i>I. lilacina</i>

description: The <i>Inocybe geophylla</i> group is circumscribed based on phylogenetic analysis of DNA sequences largely sampled from North America and Europe. Twenty-nine phylogenetic species are uncovered after analysis of combined nuc 28S rDNA (28S) and RNA polymerase II second largest subunit (<i>rpb2</i>) DNA sequence data. Species in the <i>I. geophylla</i> group share the presence of a cortina, silky-fibrillose pileus and stipe, pruinose stipe apex, spermatic odor, thick-walled hymenial cystidia, and smooth amygdaliform or elliptical basidiospores. Within the group, as many as five phylogenetic species attributable to <i>I. lilacina</i> and allies form a strongly supported clade based on analysis of nuc ITS1-5.8S-ITS2 rDNA (ITS [internal transcribed spacer]), 28S, and <i>rpb2</i> data. However, all lilac-colored species do not form a monophyletic group. Sufficient morphological and ecological data are present to document four of the <i>I. lilacina</i> subgroup species, two of which are described from North America as new: <i>I. ionocephala</i> and <i>I. sublilacina. Inocybe lilacina</i> is recircumscribed based on sequencing the holotype and is distributed in the eastern United States under pines and/or hardwoods. <i>Inocybe pallidicremea</i> is a widespread and common conifer associate in mostly northern parts of North America, to which the name <i>I. lilacina</i> was previously applied. Descriptions, photographs, line drawings, and a taxonomic key to lilac species in the <i>I. lilacina</i> subgroup from North America are provided. Well-documented collections, especially notes on gross morphology and ecology, are needed to continue to assess and describe the high taxonomic variation in the <i>I. lilacina</i> subgroup and its allies worldwide.
DOI: 10.6084/m9.figshare.24160965.v1
title: Supplementary Material for: Factors associated with discharge against medical advice among acute stroke patients: Analysis of the Nationwide Emergency Department Sample

description: Background: Patients discharged against medical advice have been shown to have worse outcomes across a host of different conditions. However, risk factors related to an increased odds of discharge against medical advice remain understudied in patients who suffer from acute cerebral infarction. Methods: We retrospectively examined the 2019 National Emergency Department Sample Database for stroke patients. Multivariable logistic regression was used to estimate associations between patient- and hospital-level factors and the outcome of discharge against medical advice. Results: Of the 603,623 encounters for acute ischemic stroke, 8858 (1.5%) were discharged against medical advice. Predictors of discharge against medical advice were lower income quartile and having either Medicaid insurance (odds ratio [OR] 1.32, 95% confidence interval [CI] 1.10-1.58) or being uninsured (OR 1.28, 95% CI 1.03-1.58). Vascular comorbidities associated with discharge against medical advice included prior tobacco use (OR 1.60, 95%CI 1.45-1.78) and coronary artery disease (OR 1.19, 95% CI 1.04-1.35). Treatment with thrombectomy (OR 0.33, 95% CI 0.13-0.78) or systemic thrombolysis (OR 0.39, 95% CI 0.23-0.66) was inversely associated with discharge against medical advice. A high modified Charlson Comorbidity Index (3+ vs. 0, OR 0.49, 95% CI 0.42-0.56) was also associated with a lower odds of discharge against medical advice. Presenting to a Northeastern hospital had the highest rate of discharge against medical advice, when compared to other regions (p&lt;0.05). Conclusions: Certain patient-level, socioeconomic, and regional factors were associated with discharge against medical advice following acute stroke. These patient and systems-level factors warrant heightened attention in order to optimize acute care and secondary prevention strategies.
DOI: 10.6084/m9.figshare.20372118.v1
title: Simulated Early Type Galaxies

description: We created various ensemble simulated images, to extensively test various aspects of GALPHAT under a variety of circumstances: (1) varying $r_{e}$ and the shape parameter $n$ as a function of S/N and PSF FWHM (Ensemble A); (2) varying the position angle (PA) and $n$ as function of PSF FWHM, and assuming typical values for $r_{e}$, $q$ and S/N (Ensemble B); (3) varying the axis ratio $q$ as function of PSF FWHM, $n$ and considering typical values for S/N and $r_{e}$ (Ensemble C); (4) varying $n$ and PSF FWHM, for a comparison between GALPHAT and GALFIT (Ensemble D); (5) galaxies with a real distribution of ETG structural parameters based on the SPIDER project (Ensemble E); and (6) galaxies with central point sources to test the Bayes-factor model classification as a indicator of nuclear activity assuming typical PSF FWHM and S/N (Ensemble F). <br> [1]La Barbera, F., de Carvalho, R. R., de La Rosa, I. G., Lopes, P. A. A., Kohl-Moreira, J. L., and Capelato, H. V., “SPIDER - I. Sample and galaxy parameters in the grizYJHK wavebands”, <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 408, no. 3, pp. 1313–1334, 2010. doi:10.1111/j.1365-2966.2010.16850.x <br> <br>
DOI: 10.6084/m9.figshare.24588120.v1
title: <b>Humility and Negative Affect: The Role of Quiet Ego</b>

description: The aim of this research is to evaluate the relationship between humility, quiet ego, and negative affect. The study also delves into the potential role of quiet ego in mediating the relationship between humility and negative affect. The sample included 188 people who completed the HEXACO-PI Honesty-Humility measure, the Depression, Anxiety, and Stress Scale, and the Quiet Ego Scale.
DOI: 10.5522/04/14781771.v1
title: Data to support the paper "Transfer Learning of Deep Spatiotemporal Networks to Model Arbitrarily Long Videos of Seizures"

description: This is the dataset to support the paper:<br>Fernando Pérez-García et al., 2021, <i>Transfer Learning of Deep Spatiotemporal Networks to Model Arbitrarily Long Videos of Seizures</i>.<br>The paper has been accepted for publication at the 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021).A preprint is available on arXiv: https://arxiv.org/abs/2106.12014<br>Contents:1) A CSV file "seizures.csv" with the following fields: - Subject: subject number - Seizure: seizure number - OnsetClonic: annotation marking the onset of the clonic phase - GTCS: whether the seizure generalises - Discard: whether one (Large, Small), none (No) or both (Yes) views were discarded for training.2) A folder "features_fpc_8_fps_15" containing two folders per seizure. The folders contain features extracted from all possible snippets from the small (S) and large (L) views. The snippets were 8 frames long and downsampled to 15 frames per second. The features are in ".pth" format and can be loaded using PyTorch: https://pytorch.org/docs/stable/generated/torch.load.html The last number of the file name indicates the frame index. For example, the file "006_01_L_000015.pth" corresponds to the features extracted from a snippet starting one second into the seizure video. Each file contains 512 numbers representing the deep features extracted from the corresponding snippet.3) A description file, "README.txt".
DOI: 10.6084/m9.figshare.18858173.v1
title: Zhengzhou Metro Data.xlsx

description: 基于复杂网络，建立概念模型研究定向攻击机灾害下城市交通网络的鲁棒性.
DOI: 10.6084/m9.figshare.26089386.v1
title: HiGTS_2023s3

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2023s3 contains the data from July 1, 2023 to September 30, 2023.
DOI: 10.6084/m9.figshare.27951795.v1
title: FOXG1 interaction with SATB2 promotes autophagy to alleviate neuroinflammation and mechanical abnormal pain in rats with lumbar disc herniation

description: Most patients with lumbar disc herniation can be relieved or cured by surgical or non-surgical treatment; however, postoperative persistent radiculopathy is common. This study demonstrates the regulation of autophagy by the FOXG1/SATB2 axis in lumbar disc herniation (LDH). Rat dorsal root neurons were induced with TNF-α <i>in vitro</i>. Sprague Dawley (SD) rats were used to construct the LDH rat model, which was treated with <i>L. paracasei S16</i> or oe-FOXG1. Paw withdrawal threshold or latency assay (PWT/L) was performed. Peripheral blood samples were collected and analysed using ELISA and miRNAseq. RT-qPCR was used to analyse the expression of FOXG1, LC3B, Beclin1, p62, and SATB2. TUNEL staining and flow cytometry were used to analyse apoptosis. The expression of Cyclin D1, PCNA, Ki67, FOXG1, SATB2, and autophagy proteins was measured using western blotting. TNF-α induced low expression of FOXG1 and SATB2 in dorsal root ganglion (DRG) neurons of rats. TNF-α induced an increase in p62 protein and a decrease in LC3II/I and Beclin-1 proteins in neurons, which were blocked by oe-FOXG1. oe-FOXG1 suppressed inflammation and apoptosis in TNF-α-induced DRG neurons and LDH rats and promoted the expression of Cyclin D1, PCNA, and Ki67. Many miRNAs were increased in the peripheral blood of LDH rats, but decreased after <i>L. paracasei S16</i> intervention. <i>L. paracasei S16</i> affects miR-31a-5p and SATB2 expression. Dual luciferase reporter gene assay confirmed that miR-31a-5p bound to SATB2. Co-IP analysis confirmed the interaction between FOXG1 and SATB2. Silencing of SATB2 inhibited the beneficial effects of oe-FOXG1 in TNF-α-induced dorsal root ganglion neurons. Animal experiments further demonstrated that oe-FOXG1 improved LDH disease characteristics by downregulating PWT, PWL, inflammation, and apoptosis levels and upregulating SATB2-autophagy levels. MiR-31a-5p/SATB2 is involved in the treatment of <i>L. paracasei S16</i> in LDH rats. Overexpression of FOXG1 promotes autophagy through SATB2 to improve LDH levels This provides a new approach for the treatment of LDH.
DOI: 10.6084/m9.figshare.28211648.v1
title: Supplementary Material for: High-sensitivity Troponin I Measurement in a Large Contemporary Cohort: Implications for Clinical Care

description: Background: Contemporary methods of cardiovascular risk stratification are frequently inaccurate. Biomarkers such as high-sensitivity troponin I (hsTnI) have the potential to improve risk stratification. However, uncertainties exist regarding factors that determine hsTnI concentration. Our aim was to investigate the prevalence of elevated hsTnI in a large, contemporary Canadian cohort and describe the effect of comorbidities on hsTnI concentration.

Methods: We report a large dataset of 41,602 visits in which hsTnI was measured routinely in ambulatory outpatients. hsTnI was remeasured in 28% of patients, with a mean time between measurements of 387 days (IQR 364-441). Low-, medium-, and high-risk categories were created based on hsTnI cutoffs for each sex. Laboratory data, blood pressure, and anthropomorphic measures were extracted from the electronic medical record 

Results: Remeasurement of hsTnI did not change risk category in 92.7% of cases. Male sex, higher HDL-C, higher Hgb A1c, decreasing eGFR, and increasing systolic blood pressure were significant predictors of increased hsTnI. High non-HDL-C and the use of statins were associated with lower hsTnI. The inverse relationship between hsTnI and non-HDL-C was partially corrected when the confounding effect of statin therapy was considered. Model fit was poor (adjusted R-Squared = 0.0091).

Conclusion: Traditional cardiovascular risk factors were predictors of serum hsTnI levels, however a significant amount of the variance in hsTnI cannot be explained by these factors alone. This suggests that hsTnI adds additional information that is not provided by traditional risk stratification methods and supports ongoing study of hsTnI as a biomarker for cardiovascular risk stratification.
DOI: 10.6084/m9.figshare.19517242.v1
title: [CSBC'22] Impacto da Pandemia Sob Perspectiva dos Discentes

description: Material Suplementar do artigo "Impactos Educacionais e Sociais da Pandemia de COVID-19 sob a Perspectiva dos Discentes".
DOI: 10.6084/m9.figshare.26049703.v6
title: Supporting data for: "Giant transposons promote strain heterogeneity in a major fungal pathogen"

description: Fungal infections are difficult to prevent and treat in large part due to heterogeneity in clinically relevant phenotypes. However, the genetic mechanisms driving pathogen variation remain poorly understood. Here, we determined the extent to which <i>Starships</i>—giant transposons capable of mobilizing numerous fungal genes—generate genetic and phenotypic variability in the human pathogen <i>Aspergillus fumigatus</i>. We analyzed 519 diverse strains, including 12 newly sequenced with long-read technology, to reveal 20 distinct <i>Starships </i>that generate genomic heterogeneity over timescales impacting experimental reproducibility. <i>Starship</i>-mobilized genes encode diverse functions, including biofilm-related virulence factors and biosynthetic gene clusters, and many are differentially expressed during infection and antifungal exposure in a strain-specific manner. These findings support a new model of fungal pathogenesis wherein <i>Starships </i>mediate variation in virulence-related gene content and expression. Together, our results demonstrate that <i>Starships </i>are a foundational mechanism generating disease-relevant genotypic and, in turn, phenotypic heterogeneity in a major human fungal pathogen.
DOI: 10.6084/m9.figshare.18393782.v1
title: Supplementary Material for: Prognostic Potential of METTL7B in Glioma

description: <b><i>Objective:</i></b> Methyltransferase-like 7B (METTL7B) is a member of methyltransferase-like family. Little is known about the exact role of METTL7B in cancer. This study aims to investigate the role of METTL7B in gliomas. <b><i>Methods:</i></b> The expression of METTL7B in glioma and adjacent normal tissues were examined by using TCGA, Chinese Glioma Genome Atlas (CGGA) database, and clinical tissues. <b><i>Results:</i></b> The results showed that METTL7B was highly expressed in glioma. Patients with high levels of METTL7B usually had poor survival in glioma, especially in low-grade glioma (LGG). Data from CGGA showed that METTL7B was an independent risk factor of glioma and can be used to evaluate the survival time of glioma patients. Hypomethylation in the METTL7B CpG islands was lower in LGG, and all the hypomethylated METTL7B islands were correlated with poor LGG survival. Furthermore, METTL7B levels were correlated with high numbers of tumor infiltrated immune cells in glioma, especially in LGG. ). Gene Set Enrichment Analysis found METTL7B was correlated with leukocyte proliferation, T-cell proliferation, peptidase activity, lymphocyte activation, etc. TCGA and CGGA database analysis showed that there were 1,546 and 1,117 genes that had a synergistic effect with METTL7B in glioma, respectively, and there were 372 genes overlapped between the 2 groups, including PD-L1. Data from clinical tissues also showed PD-L1 was highly expressed in glioma tissues and was positively correlated with METTL7B. <b><i>Conclusion:</i></b> Our study suggested that METTL7B was a potential prognostic biomarker for glioma and other cancers, and it may act as an oncogenic driver and may be a potential therapeutic target in human cancer, especially in LGG.