cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12026991.v1
title: Core Eukaryotic Genes Alignment

description: Alignment of concatenated genes pulled from the core eukaryotic gene databases of CEGMA and BUSCO that were found to be single copy in the species examined in this study.<br>
DOI: 10.6084/m9.figshare.12084921.v1
title: JDEE_Volume 1_Issue 1_Pages 11-20

description: Naft
DOI: 10.6084/m9.figshare.12334586.v1
title: 20200513 - betafunnorms familial hypercholesterolemia.csv

description: This dataset contains normalized DNA methylation data (betafunnorm) of patients with Familial Hypercholesterolemia (FH). The dataset consists of two groups of FH patients; those with a pathogenic variant in <i>LDLR</i> (FH1) and those without moleculary defects causing FH, but with LDL-C &gt; 6 mmol/L (FH4). All participants are male and not using any lipid lowering therapies.
DOI: 10.6084/m9.figshare.17031869.v2
title: Fig Share Python Codes

description: Python codes used for data filtering and processing of RNA sequencing<br>
DOI: 10.6084/m9.figshare.19095536.v1
title: Magnetic Fabrics and Petrography of Rocksalts Reveal Preferred Orientation of Anhydrites Within a Halite Matrix

description: The ecxel file contain the magnetic data used in: Issachar, R.; Weinberger, R.; Levi, T.; Barabasch, J.; Urai, J.L. Magnetic Fabrics and Petrography of Rocksalts Reveal Preferred Orientation of Anhydrites Within a Halite Matrix. Minerals 2022
DOI: 10.6084/m9.figshare.26943757.v3
title: <b>Embracing plant-plant interactions - rethinking predictions of species range shifts</b>

description: R code and plant demogrpahic associated to the worked example presented in the review article '<b>Embracing plant-plant interactions - rethinking the prediction of species range shifts</b>' published in the 4th Grime review series of Journal of Ecology.When using plant demographic data, please also refer to the research article "Sanczuk, P., De Pauw, K., De Lombaerde, E. <i>et al.</i> Microclimate and forest density drive plant population dynamics under climate change. <i>Nat. Clim. Chang.</i> <b>13</b>, 840–847 (2023). https://doi.org/10.1038/s41558-023-01744-y" as they provide the source data underlying the worked example.<br><b>Abstract</b>1. Interactions among plants are changing across the globe resulting from a multitude of changes in the environment. Obtaining accurate predictions of plant species’ range dynamics require us to account for plant-plant interactions, but this remains challenging using the existing species distribution modelling (SDM) techniques.2. Advanced SDM techniques facilitate the integration of plant species interactions based on species-to-species associations. However, for uncharted environmental conditions in which the formerly derived species’ correlations potentially no longer hold, a more process-based alternative is expected to become increasingly relevant.3. We first review the most common SDM techniques that integrate plant-plant interactions, and then present the concept for a novel map product: a spatial Plant-plant Interaction Index (PII) depicting the link between a focal species’ performance and the trait signature of the interacting vegetation. The latest developments in remote sensing and the increasing availability of vegetation plot data facilitate PII mapping based on vegetation trait-environment relationships.<i>4.</i><i> </i><b><i>Synthesis</i></b><i> </i>PII mapping holds the potential to advance next-generation biogeographical analyses as it can serve as a pivotal missing covariate layer necessary for the integration of plant-plant interactions into SDM applications. This data product adds flexibility to the ecologists’ toolbox to analyze species range shifts and the formation of novel communities as a response to multiple environmental changes.
DOI: 10.6084/m9.figshare.3556779.v1
title: Data Paper. Data Paper

description: File List allrecords_density.csv (MD5: a402cf1e63f2d7f141c233553375430a) allrecords_cover.csv (MD5: d03e1ed92c34cb02656b7bc1f419addb) quad_inventory.csv (MD5: 2a48e9b26527feb44976703065bab3f8) quad_info.csv (MD5: cf6a9ea425049e5892b6fe679d51df91) quad_stocking_rate.csv (MD5: 9c4bfc65ea924777b7ccfa8e1fa80a4a) daily_climate_data.csv (MD5: 8f28d4b6c636f720d8a75e78aac594b5) species_list.csv (MD5: 6abaa00e0b2744c3da8361509d33ee04) species_name_changes.csv (MD5: daae6f3b8983c41e83fbe2f2815a053e) shapefiles.zip (MD5: 32b1fa8d6d9edba2499dd45f60033553) Description This data set was created to map and analyze demographic rates of many common plant species in the shortgrass steppe of North America under grazed and ungrazed conditions. Twenty-four permanent 1-m² quadrats were established as part of the Shortgrass Steppe Long Term Ecological Research project in six grazed and ungrazed study sites on the Central Plains Experimental Range in Nunn, Colorado, USA. We used a pantograph to record the location and shape of individual plants annually from 1997 to 2010. These data make it possible to determine the fate of individual plants using a Geographic Information System and spatial analysis techniques. The data provide unique opportunities to test the interactive effects of grazing and climate variables on demographic rates, plant–plant interactions, and population and community dynamics. We provide the following data and data formats: (1) the digitized maps in shapefile format; (2) a tabular representation of centroid or point location (x, y coordinates), and basal cover (m²) for plants mapped as polygons; (3) quadrat information including location (longitude and latitude), elevation, and livestock grazing treatment and history; (4) detailed information on stocking rates during the period of quadrat sampling; (5) daily temperature and precipitation values; (6) a species list including the total records for each species, plant growth forms, and longevity; and (7) an inventory of the years each quadrat was sampled. <i>Key words: climate; Colorado; Geographic Information Systems (GIS); livestock grazing; plant community; plant demography; shortgrass steppe; species interaction.</i>
DOI: 10.6084/m9.figshare.3563922.v1
title: Supplement 1. Code developed to measure riparian buffer width, vegetation height and canopy cover along stream reaches.

description: File List <b>All files at once:</b> Code.zip funCalcStreamLength.m funCalcTransectBufferWidth2.m funCalculateMEI.m funCalculateNewXY.m funCalculatePointsAlongLine.m funCalculatePointsAlongLine_Reverse.m funCalculatepointsAlongLine_Reverse_TransectCenter.m funCalculateRectangleVertices.m funFindStreamGrdLidarExtent.m funFindStreamVeglidarExtent.m funPrctile.m funSampleLidar.m funSampleLidar_forestClass.m funSplitStreams.m ProduceFinalTransectData_ForAnalysis.m SampleStreambufferWidth_Mar31_2012_Oct2014_Publish.m Slidefun.m Description The ProduceFinalTransectData_ForAnalysis.m and SampleStreambufferWidth_Mar31_2012_Oct2014_Publish.m files are the core code used to process all of the LiDAR data presented in this manuscript. All other code included in this supplement are functions that are called within the two main scripts. Please be sure to save all code files in the same directory. The inputs to both scripts are detailed in the top matter of the scripts. First, run SampleStreambufferWidth_Mar31_2012_Oct2014_Publish.m. The inputs for this script include ground and non-ground lidar point clouds saved in the "lidarData" directory and a streams data saved in x,y,z format. Please see the code for documentation and examples of all inputs. Other input variables can be defined in the top matter of the code or you may choose to use the default values. All final output will be saved in the "finalResults" folder – included as an empty directory in this supplement. This script will do several things. First it will segment out your stream data into 1,000.01m long reaches. Analyzing smaller segments of stream reduces the file processing sizes and time. Next, the code will use the stream segments to calculate transects within which the lidar data will be analyzed. The final output will be data for each transect that includes its width, and vegetation structure within moving windows as defined in the algorithm. The second script, ProduceFinalTransectData_ForAnalysis.m, takes all of the output from the first script and generate a final matrix that can be used to perform final statistical analysis. This code uses the results in the finalResults folder.
DOI: 10.17605/osf.io/3x6jb
title: Improving the arrow selection process

description: In a precision sport such as archery, optimizing the arrows used and how they are assembled is essential to perform at an elite level. Since there are many mechanical characteristics to consider, such as their mass, stiffness, diameter, straightness, and fletching position, this study aimed to assess which parameters should be prioritized for the arrow selection process. The mechanical properties of sixty arrow shafts were obtained using an automated testing bench, and a sinusoidal wave was used to model the stiffness variation around the shaft cross-section. A controlled assembling procedure allowed the characterization of the positions of the vanes relative to the stiffness extrema. The arrows were then shot at 70 meters indoors, using a shooting machine, thus removing the human and wind-induced variability. Two significant multiple stepwise regression models partially predicted the vertical or horizontal position of the arrows on target, using the mass and the mean stiffness, or the mean stiffness and stiffness variation amplitude, respectively. Furthermore, a combination of the mass, mean stiffness and stiffness frequency was found to better explain the relative proximity of arrow marks with each other, suggesting that the ability to control the stiffness variation pattern is required.
DOI: 10.17632/jpgvcv99p5
title: Same-sex romantic cruise travel experience: The moderating effect of the personal openness trait

description: Data for: Same-sex romantic cruise experience: The moderating effect of the personal openness trait
DOI: 10.6084/m9.figshare.19403021.v1
title: Full-length transcriptome maps of reef-building coral illuminate the molecular basis of calcification, symbiosis, and circadian genes

description: We sequenced the full-length transcriptomes of four common and frequently dominant reef-building corals, including two Robusta clade species, <i>Pocillopora damicornis</i> and <i>Pocillopora verrucosa</i>, and two Complexa clade species, <i>Acropora muricata</i> and <i>Montipora foliosa</i><i>,</i> using the PacBio Sequel II platform. We obtained information on gene functions, structures and expression profiles. Among them, a comparative analysis of biomineralization-related genes provided insights into the molecular basis of coral skeletal density. The gene expression profiles of the symbiote Symbiodiniaceae were also isolated and annotated from the holobiont sequence data; these profiles showed more highly convergent traits related to gene structure and expression level than those of coral hosts. Interestingly, we observed that intracellular algal cells share some evolutionary convergence between intracellular symbiosis in corals and intracellular digestion in amphioxus. Finally, a phylogenetic analysis of key circadian clock genes among 27 evolutionarily representative species indicated that there are four key members in early metazoans, including <i>cry </i>genes; <i>Clock</i> or <i>Npas2</i>; <i>cyc</i> or <i>Arntl</i>; and <i>tim</i>, while <i>per</i>, as the fifth member, occurs in Bilateria.
DOI: 10.6084/m9.figshare.19849009.v1
title: EEG data set

description:   PARAMETERS OF THE EXPERIMENT <br>
   
<br>
  Time interval of background EEG recording : 120 sec 
  Time interval of each visual stimuli presentation : 60 sec 
  Time interval between visual stimuli presentations : 20 sec 
  Number of presented visual stimuli : 10 <br>
     Total duration of the experimental session : 920 sec 
  Location of EEG scalp electrodes :   International 10–20 system 
  EEG recording sampling rate :   250Hz 
  Considered EEG channels : Channels.dat file <br>
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DOI: 10.6084/m9.figshare.20304375.v1
title: Data.xlsx

description: It is an excel file with 4 sheets, one for each figure.
DOI: 10.6084/m9.figshare.26211041.v4
title: Antrma ethnobotany and ecology investigation

description: Ethnobotany resaerch about using wood by local people in Antrema
DOI: 10.6084/m9.figshare.28074479.v1
title: <b>Salty secrets of </b><b><i>Halobacterium salinarum AD88</i></b><b>: a new archaeal ecotype isolated from Cuatro Cienegas Basin.</b>

description: Raw reads from Halobacterium salinatum strain AD88
DOI: 10.6084/m9.figshare.7558700.v1
title: Supplemental material for Giri et al 2019 "The Neurospora crassa standard Oak Ridge background exhibits atypically efficient meiotic silencing by unpaired DNA".

description: Revised MS Table S6 presents round ascospore fractions from lid harvests of crosses heterozygous or homozygous for an <i>::r1</i> transgene.Revised MS Table S5 presents round ascospores from lid harvests of crosses heterozygous or homozygous for an <i>::r3</i> transgene.Revised MS Table S4 presents round ascospore fractions from crosses heterozygous or homozygous for an <i>::r1</i> transgene.Revised MS Table S3 presents the genome sequencing statistics for strains NC1-NC13, NC7BS and NC8BSRevised MS Table S2 lists the oligonucleotide primers used in this study.Revised MS Table S1 lists the Neurospora strains used in this study.Giri et al 2019 Figure S1 presents a schematic figure describing the derivation of the <i>Sad-2<sup>Nt</sup> </i>strains. Giri et al 2019 Legend to Figure S1 is the figure legend for Figure S1.<br>
DOI: 10.6084/m9.figshare.7850576.v1
title: Additional file 7: of Human genes escaping X-inactivation revealed by single cell expression data

description: Table S6. LncRNAs informative SNPs (iSNPs) along with their labeling on ChrX on both fibroblasts, and Lymphoblasts. (XLSX 70 kb)
DOI: 10.17632/59tp8sdgr8
title: Working from home during COVID-19 crisis – A Cyber-Security Culture Assessment Survey

description: This survey aimed to evaluate the cyber-security culture readiness of organizations from different countries and business domains when teleworking became a necessity due to the COVID-19 crisis. A targeted questionnaire was designed and a web-based survey was conducted addressing employees while working from home during the COVID-19 spread over the globe. The questionnaire contained no more than 23 questions and was available for almost a month, from 7th April 2020 until 3rd May 2020. During that period, 264 participants from 13 European countries spent approximately 8 minutes to answer it. Gathered data are being hosted in this dataset along with their analysis and graphical representation.
DOI: 10.17632/ydr8vgg64w
title: Annotated Sugarcane Plants

description: Ubaid, M.T.; Javaid, S. Precision Agriculture: Computer Vision-Enabled Sugarcane Plant Counting in the Tillering Phase. Journal of Imaging 2024, 10, 102. https://doi.org/10.3390/jimaging10050102

Description

Plant annotation is the process of identifying and naming certain aspects or characteristics of plant species, usually for research, categorization, or agriculture. This technique is frequently done out manually by specialists or using automated systems that employ picture recognition technologies. Annotations give useful information on plants' morphology, phenology, diseases, and genetic characteristics. They may include labels for anatomical structures. Annotations may also include categorizing plants based on their development stage, health status, or species identification. Plant annotations are used in agriculture to monitor crop development, detect pests and diseases, optimize cultivation practices, and improve production estimates. Additionally, annotated plant datasets are useful resources for training machine learning models for automated plant recognition and analysis tasks.

The images were labeled using the labeling tool "labelImg". The cane under the leaves was labeled. Annotating the images was difficult because the cane section was so little. Labeling needs care and accuracy while drawing a bounded box around the cane. For 175 photos of data, around 18650 bounding boxes were drawn. The bounding boxes were allocated the class name "sugarcane".
DOI: 10.6084/m9.figshare.24718683.v1
title: Characterization of atmospheric methane release in the outer Mackenzie River delta from biogenic and thermogenic sources. Data used in Table 1.

description: A .pdf file containing geolocated atmospheric CH<sub>4</sub> and CO<sub>2</sub> mixing ratios for the Mackenzie-Beaufort Delta region of the Northwest Territories, Canada. CH<sub>4</sub> and CO<sub>2</sub> values are in parts per million by volume (ppmv). All sample air was drawn from approximately 1 m above ground level. Gas mixing ratios were standardized to Ameriflux FB04306 breathing grade air (benchmarked to 0.5 ppb). Measurements at sites Pingo 3 and Wetland 1 were obtained by using a portable Li-Cor LI-7810 gas analyser in the field. The Li-Cor LI-7810 gas analyser has an accuracy of 0.25 ppb. Measurements at sites Pingo 1, Pingo 2, Wetland 2, Wetland 3, and Site 9 were collected by filling a 30 m coil of 4 mm inside diameter aluminum Synflex tubing while walking at a steady pace across the ground. Coils of tubing were purged with nitrogen and sealed prior to sampling. A constant flow rate of 20 standard cubic centimetres per minute (SCCM) was maintained by attaching a small pump and a flow controller to the coil of tubing. Air samples were analysed immediately on return from the field site by feeding the sample into a Picarro G2210i analyser at the same rate at which it was filled. The Picarro G2210i analyser is accurate to within 0.001 ppm CH<sub>4</sub>, and 1 ppm CO<sub>2</sub>.
DOI: 10.6084/m9.figshare.28123373.v1
title: Teacher gesture and level of gestural synchronization

description: We studied have teacher gesture influences students level of gestural synchronization considering students level of achievement in mathematics as a mediating factor.
DOI: 10.6084/m9.figshare.28435976.v1
title: 评估景观特征在沿海公园游客情绪波动中的作用：一种机器学习方法

description: 近年来，景观环境对游客情绪的影响日益成为可持续旅游和城市规划研究中的重要话题。然而，关于滨海国家公园多维环境特征与游客情绪之间关系的研究仍然相对有限。本研究整合机器学习和多源数据，系统探讨福建沿海国家公园的景观环境如何影响游客的情绪波动。使用自然语言处理 （NLP） 技术，从社交媒体文本数据中计算情感指数，同时采用语义分割模型和图像分析来提取环境特征数据。LightGBM 模型和 SHAP 方法用于评估不同环境变量对游客情绪的相对重要性，并使用 ArcMap 将结果可视化。结果表明：<b> </b><b>（1）</b> 在过去 5 年中，87.06% 的情绪是积极的，其中福耀群岛、长乐和厦门的情绪指数最高。<b> </b><b>（2）</b>绿化 （0.0–0.2） 和水生率 （0.1–0.15） 对情绪的积极影响最显著，而运输比例和铺路度的影响相对较小。本研究为滨海国家公园的可持续发展提供了理论依据，并为优化景观规划以提升游客的情感体验提供了实践见解。
DOI: 10.17632/nffzf2jktp
title: The Impact of Emotional Contagion Susceptibility on Burnout Levels and Job Satisfaction Among Nurses Caring for Patients in the Terminal Phase

description: The Impact of Emotional Contagion Susceptibility on BThe Impact of Emotional Contagion Susceptibility on Burnout Levels and Job Satisfaction Among Nurses Caring for Patients in the Terminal Phaseurnout Levels and Job Satisfaction Among Nurses Caring for Patients in the Terminal Phase
DOI: 10.6084/m9.figshare.29097509.v1
title: Supplementary Material for: Accuracy and Safety of a Continuous Noninvasive Blood Pressure Monitor in Neonates

description: Background: Accurate and continuous blood pressure (BP) monitoring in neonates is crucial in the Intensive Care Unit. Invasive arterial lines, oscillometric cuffs, and current noninvasive continuous BP monitoring devices have significant limitations. The Boppli® device is a novel, continuous, noninvasive BP device that requires no calibration, designed for neonates.

Aim & Methods: This prospective, multicenter study evaluated the performance, usability, and safety of the Boppli device in neonates &lt;5 kg. We compared Mean Arterial Pressure (MAP), Systolic Blood Pressure (SBP) and Diastolic Blood Pressure (DBP) measurements from the Boppli with IAL reference values by calculating average values of Mean Average Error (MAE) and Standard Deviation (SD) for each patient, then averaging those means. Safety and usability were evaluated by analysis of adverse events and survey data, respectively.

Results: The Boppli device demonstrated good performance, meeting the FDA requirements of MAE and SD of the entire cohort: MAE (SD) 0.7 (5.3) mmHg for MAP, -0.8 (7.7) mmHg for SBP, and 1.4 (4.7) mmHg for DBP. Patients with elevated MAPs, Asian ethnicity, and lower extremity IALs were the subgroups with MAE &gt;±5 mmHg. Various subgroups had standard deviations &gt;8 mmHg attributed to low sample sizes. The device received high usability scores from clinicians and parents. No serious adverse events were reported.

Conclusions: The Boppli device is a promising alternative for continuous noninvasive BP monitoring in neonates, offering good accuracy and usability. The device, which received 510(k) clearance in September of 2023, was well-received by clinicians and parents, with a low risk profile.
DOI: 10.6084/m9.figshare.9572501.v2
title: Causal effects of human serum metabolites on development of polycystic ovary syndrome: A Mendelian randomization study

description: causal effects of metabolites on PCOS<br>
DOI: 10.17632/5yyr698ncb
title: Cephalopoint Measurements

description: Cephalopoint is an open-source software code programmed on Octave; each code applied vector and matrix operations to measure the Cephalometric traces according to Downs and Steiner's Analysis. Octave was selected as the platform to develop the software because it has a set of commands to convert images, do matrix and vector operations, and plot tools in many ways. Furthermore, it offers the possibility to incorporate routines from other programmers to upgrade the code helping to do image processing to recognize the Cephalometric points or use special statistical libraries.
The following files were used to measure 42 lateral cephalograms of different patients of Dentistry Clinical of UPAEP for each analysis applying manual and software techniques.
DOI: 10.17632/6j2v35ykky
title: XRF data using varied KClO3

description: XRF data yielding from Froth Flotation Method using varied KClO3 concentrations to examine REE.
DOI: 10.6084/m9.figshare.14035109.v2
title: The rise and fall of proboscidean ecological diversity

description: A .tre file with 300 phylogenetic trees of proboscideans without zero-length branches obtained from MrBayes <br> An Excel file with occurrence data and trait information.
DOI: 10.6084/m9.figshare.16571459.v3
title: College Education

description: This dataset is accessed from https://www.kaggle.com/jessemostipak/college-tuition-diversity-and-pay and was downloaded on August 4, 2021. <br><br> The following excerpt is from Kaggle regarding the sources of this dataset: The data this week comes from many different sources but originally came from the US Department of Education. Tuition and fees by college/university for 2018-2019, along with school type, degree length, state, in-state vs out-of-state from the Chronicle of Higher Education. Diversity by college/university for 2014, along with school type, degree length, state, in-state vs out-of-state from the Chronicle of Higher Education. Example diversity graphics from Priceonomics. Average net cost by income bracket from TuitionTracker.org. Example price trend and graduation rates from TuitionTracker.org Salary potential data comes from payscale.com. This dataset included the following files: 1. diversity_school.csv 2. historical_tuition.csv 3. salary_potential.csv 4. tuition_cost.csv 5. tuition_income.csv After data cleaning, the data in <i>diversity_school.csv</i> and <i>tuition_cost.csv</i> were merged and the data in <i>salary_potential.csv</i> and <i>tuition_income.csv</i> were merged. The combined datasets were then split based on the US Census Regions into West, Midwest, Northeast and South (https://www2.census.gov/geo/pdfs/maps-data/maps/reference/us_regdiv.pdf).
DOI: 10.6084/m9.figshare.22789901.v1
title: data_fxcons.dta

description: <strong>KLIPS (Korean Labor & Income Panel Study) is a longitudinal survey of the labor market / income activities of households and individuals residing in urban areas. The 1st Wave of the KLIPS was launched by the KLI (Korea Labor Institute) in 1998</strong>