cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12819187.v1
title: Additional file 1 of Targeting the honey bee gut parasite Nosema ceranae with siRNA positively affects gut bacteria

description: Additional file 1 File S1 sequencing alignment statistics and normalized microbe counts.
DOI: 10.6084/m9.figshare.12819175
title: Additional file 1 of CSF extracellular vesicle proteomics demonstrates altered protein homeostasis in amyotrophic lateral sclerosis

description: Additional file 1: Table S1. Top 200 GO terms overrepresented in extracted EV proteome compared with the whole CSF proteome as identified in the CSF proteome resource. Table S2. Progenesis quantificaion and identifications data (non-normalised, non-transformed). Table S3. GO term enrichment using gene set enrichment analysis comparing ALS and healthy control (positive score indicates enrichment in upregulated proteins in ALS). Table S4. GO term overrepresentation analysis comparing ALS and healthy control (positive score indicates enrichment in upregulated proteins in ALS). Table S5. GO term enrichment using gene set enrichment analysis comparing ALS and C9orf72 positive patients (positive score indicates enrichment in upregulated in non C9orf72-associated ALS). Table S6. GO term overrepresentation analysis comparing ALS and C9orf72 positive patients (positive score indicates enrichment in upregulated proteins in non C9orf72-associated ALS).
DOI: 10.6084/m9.figshare.12819175.v1
title: Additional file 1 of CSF extracellular vesicle proteomics demonstrates altered protein homeostasis in amyotrophic lateral sclerosis

description: Additional file 1: Table S1. Top 200 GO terms overrepresented in extracted EV proteome compared with the whole CSF proteome as identified in the CSF proteome resource. Table S2. Progenesis quantificaion and identifications data (non-normalised, non-transformed). Table S3. GO term enrichment using gene set enrichment analysis comparing ALS and healthy control (positive score indicates enrichment in upregulated proteins in ALS). Table S4. GO term overrepresentation analysis comparing ALS and healthy control (positive score indicates enrichment in upregulated proteins in ALS). Table S5. GO term enrichment using gene set enrichment analysis comparing ALS and C9orf72 positive patients (positive score indicates enrichment in upregulated in non C9orf72-associated ALS). Table S6. GO term overrepresentation analysis comparing ALS and C9orf72 positive patients (positive score indicates enrichment in upregulated proteins in non C9orf72-associated ALS).
DOI: 10.6084/m9.figshare.12819160
title: Additional file 3 of Characterization of integrated prophages within diverse species of clinical nontuberculous mycobacteria

description: Additional file 3. This file contains 6 data tables used in the study. The Predicted_Prophages tab provides details about the predicted prophages including the genomic coordinates, cluster assignment, and the presence/absence of a bacterial virulence gene. The Predicted_Prophages_Edge_Cases lists the coordinates of prophages near the ends of contigs. The Bacterial_Genes tab represents the annotated output of bacterial genes (excluding bacterial virulence genes). The Virulence_Genes represents the annotated output of bacterial virulence genes. The Cluster_Virulence tab groups the predicted prophages by cluster and virulence status. The Virulence_Gene_Origins tab represents a count of the species origin of a virulence gene in the predicted prophages.
DOI: 10.6084/m9.figshare.12819160.v1
title: Additional file 3 of Characterization of integrated prophages within diverse species of clinical nontuberculous mycobacteria

description: Additional file 3. This file contains 6 data tables used in the study. The Predicted_Prophages tab provides details about the predicted prophages including the genomic coordinates, cluster assignment, and the presence/absence of a bacterial virulence gene. The Predicted_Prophages_Edge_Cases lists the coordinates of prophages near the ends of contigs. The Bacterial_Genes tab represents the annotated output of bacterial genes (excluding bacterial virulence genes). The Virulence_Genes represents the annotated output of bacterial virulence genes. The Cluster_Virulence tab groups the predicted prophages by cluster and virulence status. The Virulence_Gene_Origins tab represents a count of the species origin of a virulence gene in the predicted prophages.
DOI: 10.6084/m9.figshare.12819157
title: Additional file 2 of Characterization of integrated prophages within diverse species of clinical nontuberculous mycobacteria

description: Additional file 2. This file contains the RefSeq assembly accession, NCBI Assembly ID, Bioproject, species, and source of the complete genomes used in this study.
DOI: 10.6084/m9.figshare.12819151
title: Additional file 1 of Knowledge, attitudes and practices of young adults towards HIV prevention: an analysis of baseline data from a community-based HIV prevention intervention study in two high HIV burden districts, South Africa

description: Additional file 1. Knowledge, attitudes and practices data. This file contains data used for this manuscript.
DOI: 10.6084/m9.figshare.12819157.v1
title: Additional file 2 of Characterization of integrated prophages within diverse species of clinical nontuberculous mycobacteria

description: Additional file 2. This file contains the RefSeq assembly accession, NCBI Assembly ID, Bioproject, species, and source of the complete genomes used in this study.
DOI: 10.6084/m9.figshare.12819151.v1
title: Additional file 1 of Knowledge, attitudes and practices of young adults towards HIV prevention: an analysis of baseline data from a community-based HIV prevention intervention study in two high HIV burden districts, South Africa

description: Additional file 1. Knowledge, attitudes and practices data. This file contains data used for this manuscript.
DOI: 10.6084/m9.figshare.12819144
title: Additional file 1 of A transcriptomic analysis of serial-cultured, tonsil-derived mesenchymal stem cells reveals decreased integrin α3 protein as a potential biomarker of senescent cells

description: Additional file 1. A complete list of all genes that could be included in each GO term enrichment category is presented. The top 10 enriched biological processes, cellular component, and molecular functions related terms were listed.
DOI: 10.6084/m9.figshare.12819144.v1
title: Additional file 1 of A transcriptomic analysis of serial-cultured, tonsil-derived mesenchymal stem cells reveals decreased integrin α3 protein as a potential biomarker of senescent cells

description: Additional file 1. A complete list of all genes that could be included in each GO term enrichment category is presented. The top 10 enriched biological processes, cellular component, and molecular functions related terms were listed.
DOI: 10.6084/m9.figshare.12819132
title: Additional file 6 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 6: Table S6. KEGG Pathway enriched in the downregulated differentially expressed genes.
DOI: 10.6084/m9.figshare.12819126
title: Additional file 4 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 4: Table S4. GO annotations enriched in the downregulated differentially expressed genes.
DOI: 10.6084/m9.figshare.12819129
title: Additional file 5 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 5: Table S5. KEGG Pathway enriched in the upregulated differentially expressed genes.
DOI: 10.6084/m9.figshare.12819132.v1
title: Additional file 6 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 6: Table S6. KEGG Pathway enriched in the downregulated differentially expressed genes.
DOI: 10.6084/m9.figshare.12819120
title: Additional file 2 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 2: Table S2. Differentially expressed genes of Aag2 cell line from DENV-2-infected cells compared to uninfected cell.
DOI: 10.6084/m9.figshare.12819123
title: Additional file 3 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 3: Table S3. GO annotations enriched in the upregulated differentially expressed genes.
DOI: 10.6084/m9.figshare.12819126.v1
title: Additional file 4 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 4: Table S4. GO annotations enriched in the downregulated differentially expressed genes.
DOI: 10.6084/m9.figshare.12819129.v1
title: Additional file 5 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 5: Table S5. KEGG Pathway enriched in the upregulated differentially expressed genes.
DOI: 10.6084/m9.figshare.12819111
title: Additional file 8 of Comparative analysis of diet-associated responses in two rice planthopper species

description: Additional file 8: Table S3. Differentially expressed genes in rice-colonized SBPH (rSBPH) and wheat-colonized SBPH (wSBPH).
DOI: 10.6084/m9.figshare.12819117
title: Additional file 1 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 1: Table S1. Primers used for qRT-PCR validation.
DOI: 10.6084/m9.figshare.12819123.v1
title: Additional file 3 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 3: Table S3. GO annotations enriched in the upregulated differentially expressed genes.
DOI: 10.6084/m9.figshare.12819114
title: Additional file 9 of Comparative analysis of diet-associated responses in two rice planthopper species

description: Additional file 9: Table S4. Classification of the identified differentially expressed genes in SBPH.
DOI: 10.6084/m9.figshare.12819117.v1
title: Additional file 1 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 1: Table S1. Primers used for qRT-PCR validation.
DOI: 10.6084/m9.figshare.12819120.v1
title: Additional file 2 of Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection

description: Additional file 2: Table S2. Differentially expressed genes of Aag2 cell line from DENV-2-infected cells compared to uninfected cell.
DOI: 10.6084/m9.figshare.12819105
title: Additional file 6 of Comparative analysis of diet-associated responses in two rice planthopper species

description: Additional file 6: Table S1. Differentially expressed genes when rice-colonized SBPH (rSBPH) were transferred to wheat plants.
DOI: 10.6084/m9.figshare.12819108
title: Additional file 7 of Comparative analysis of diet-associated responses in two rice planthopper species

description: Additional file 7: Table S2. Differentially expressed genes when rice-colonized BPH (rBPH) were transferred to wheat plants.
DOI: 10.6084/m9.figshare.12819111.v1
title: Additional file 8 of Comparative analysis of diet-associated responses in two rice planthopper species

description: Additional file 8: Table S3. Differentially expressed genes in rice-colonized SBPH (rSBPH) and wheat-colonized SBPH (wSBPH).
DOI: 10.6084/m9.figshare.12819114.v1
title: Additional file 9 of Comparative analysis of diet-associated responses in two rice planthopper species

description: Additional file 9: Table S4. Classification of the identified differentially expressed genes in SBPH.
DOI: 10.6084/m9.figshare.12819105.v1
title: Additional file 6 of Comparative analysis of diet-associated responses in two rice planthopper species

description: Additional file 6: Table S1. Differentially expressed genes when rice-colonized SBPH (rSBPH) were transferred to wheat plants.
DOI: 10.6084/m9.figshare.12819108.v1
title: Additional file 7 of Comparative analysis of diet-associated responses in two rice planthopper species

description: Additional file 7: Table S2. Differentially expressed genes when rice-colonized BPH (rBPH) were transferred to wheat plants.
DOI: 10.6084/m9.figshare.12819084
title: Additional file 10 of Comparative analysis of diet-associated responses in two rice planthopper species

description: Additional file 10: Table S5. Comparative genomic analysis of genes in response to host transfer in two planthopper species.
DOI: 10.6084/m9.figshare.12819084.v1
title: Additional file 10 of Comparative analysis of diet-associated responses in two rice planthopper species

description: Additional file 10: Table S5. Comparative genomic analysis of genes in response to host transfer in two planthopper species.
DOI: 10.6084/m9.figshare.12819069
title: Additional file 1 of Screening for domestic abuse and its relationship with demographic variables among elderly individuals referred to primary health care centers of Shiraz in 2018

description: Additional file 1.
DOI: 10.6084/m9.figshare.12819069.v1
title: Additional file 1 of Screening for domestic abuse and its relationship with demographic variables among elderly individuals referred to primary health care centers of Shiraz in 2018

description: Additional file 1.
DOI: 10.6084/m9.figshare.12819016
title: Additional file 6 of An integrative pan-cancer investigation reveals common genetic and transcriptional alterations of AMPK pathway genes as important predictors of clinical outcomes across major cancer types

description: Additional file 6. Differentially expressed genes between patients separated by the 24-AMPK-gene set into 4th and 1st quartiles.
DOI: 10.6084/m9.figshare.12819013
title: Additional file 5 of An integrative pan-cancer investigation reveals common genetic and transcriptional alterations of AMPK pathway genes as important predictors of clinical outcomes across major cancer types

description: Additional file 5. Univariate and multivariate Cox proportional hazards regression analyses.
DOI: 10.6084/m9.figshare.12819016.v1
title: Additional file 6 of An integrative pan-cancer investigation reveals common genetic and transcriptional alterations of AMPK pathway genes as important predictors of clinical outcomes across major cancer types

description: Additional file 6. Differentially expressed genes between patients separated by the 24-AMPK-gene set into 4th and 1st quartiles.
DOI: 10.6084/m9.figshare.12819013.v1
title: Additional file 5 of An integrative pan-cancer investigation reveals common genetic and transcriptional alterations of AMPK pathway genes as important predictors of clinical outcomes across major cancer types

description: Additional file 5. Univariate and multivariate Cox proportional hazards regression analyses.
DOI: 10.6084/m9.figshare.12819007
title: Additional file 3 of An integrative pan-cancer investigation reveals common genetic and transcriptional alterations of AMPK pathway genes as important predictors of clinical outcomes across major cancer types

description: Additional file 3. Somatic copy number alterations of AMPK pathway genes above 20% of samples within each cancer type.
DOI: 10.6084/m9.figshare.12819007.v1
title: Additional file 3 of An integrative pan-cancer investigation reveals common genetic and transcriptional alterations of AMPK pathway genes as important predictors of clinical outcomes across major cancer types

description: Additional file 3. Somatic copy number alterations of AMPK pathway genes above 20% of samples within each cancer type.
DOI: 10.6084/m9.figshare.12819001
title: Additional file 1 of An integrative pan-cancer investigation reveals common genetic and transcriptional alterations of AMPK pathway genes as important predictors of clinical outcomes across major cancer types

description: Additional file 1. List of 92 AMPK pathway genes.
DOI: 10.6084/m9.figshare.12819001.v1
title: Additional file 1 of An integrative pan-cancer investigation reveals common genetic and transcriptional alterations of AMPK pathway genes as important predictors of clinical outcomes across major cancer types

description: Additional file 1. List of 92 AMPK pathway genes.
DOI: 10.6084/m9.figshare.12818964
title: Additional file 8 of High intensity exercise downregulates FTO mRNA expression during the early stages of recovery in young males and females

description: Additional file 8: Table S-3 Metabolites (VIP).
DOI: 10.6084/m9.figshare.12818961
title: Additional file 7 of High intensity exercise downregulates FTO mRNA expression during the early stages of recovery in young males and females

description: Additional file 7: Table S-2 Metabolite Parameters.
DOI: 10.6084/m9.figshare.12818964.v1
title: Additional file 8 of High intensity exercise downregulates FTO mRNA expression during the early stages of recovery in young males and females

description: Additional file 8: Table S-3 Metabolites (VIP).
DOI: 10.6084/m9.figshare.12818961.v1
title: Additional file 7 of High intensity exercise downregulates FTO mRNA expression during the early stages of recovery in young males and females

description: Additional file 7: Table S-2 Metabolite Parameters.
DOI: 10.6084/m9.figshare.12818958
title: Additional file 6 of High intensity exercise downregulates FTO mRNA expression during the early stages of recovery in young males and females

description: Additional file 6: Table S-1 mRNA Assay ID's.
DOI: 10.6084/m9.figshare.12818958.v1
title: Additional file 6 of High intensity exercise downregulates FTO mRNA expression during the early stages of recovery in young males and females

description: Additional file 6: Table S-1 mRNA Assay ID's.
DOI: 10.6084/m9.figshare.12818900
title: Enzymatic and transcriptomic analysis reveals the essential role of carbohydrate metabolism in freesia (Freesia hybrida) corm formation

description: This is the sequencing data for fressia corm transcriptome.
DOI: 10.6084/m9.figshare.12818900.v1
title: Enzymatic and transcriptomic analysis reveals the essential role of carbohydrate metabolism in freesia (Freesia hybrida) corm formation

description: This is the sequencing data for fressia corm transcriptome.
DOI: 10.6084/m9.figshare.12818804
title: ML tree and genes for tree construction

description: ML tree of 17 Myrtaceae species and with Punica granatum as the outgroup. List of genes for phylogenetic analysis.
DOI: 10.6084/m9.figshare.12818801
title: Gene database of Methanobrevibacter ruminantium M1

description: <i>Methanobrevibacter ruminantium</i> is a ruminant methanogen, and could serve as indicator of faecal pollution in waters. This work sought to provide foundational information about the genetic repertoire of <i>Methanobrevibacter ruminantium</i> M1 through parsing the annotated genome sequence of the archaeon downloaded from Genbank. Comprising gene name, gene function, and gene sequence, the resource should be useful for preliminary analysis of the metabolic capability of the ruminant, as well as informing functional genomics study of the archaeon.
DOI: 10.6084/m9.figshare.12818804.v2
title: ML tree and genes for tree construction

description: ML tree of 17 Myrtaceae species and with Punica granatum as the outgroup. List of genes for phylogenetic analysis.
DOI: 10.6084/m9.figshare.12818801.v1
title: Gene database of Methanobrevibacter ruminantium M1

description: <i>Methanobrevibacter ruminantium</i> is a ruminant methanogen, and could serve as indicator of faecal pollution in waters. This work sought to provide foundational information about the genetic repertoire of <i>Methanobrevibacter ruminantium</i> M1 through parsing the annotated genome sequence of the archaeon downloaded from Genbank. Comprising gene name, gene function, and gene sequence, the resource should be useful for preliminary analysis of the metabolic capability of the ruminant, as well as informing functional genomics study of the archaeon.
DOI: 10.6084/m9.figshare.12818786
title: Extended Data: Independent accretion of TIM22 complex subunits in the animal and fungal lineages

description: Supplemental Table with accessions. Two supplemental text files from HMM searches.
DOI: 10.6084/m9.figshare.12818804.v1
title: ML tree of Myrtaceae_Sjambos

description: ML tree of 17 Myrtaceae species and with Punica granatum as the outgroup.
DOI: 10.6084/m9.figshare.12818786.v1
title: Extended Data: Independent accretion of TIM22 complex subunits in the animal and fungal lineages

description: Supplemental Table with accessions. Two supplemental text files from HMM searches.
DOI: 10.6084/m9.figshare.12818753
title: Supporting Material - Biochar selection for Escherichia coli removal in stormwater biofilters

description: Supporting material for the manuscript entitled "Biochar selection for Escherichia coli removal in stormwater biofilters" submitted as a technical note to Journal of Environmental Engineering.
DOI: 10.6084/m9.figshare.12818753.v1
title: Supporting Material - Biochar selection for Escherichia coli removal in stormwater biofilters

description: Supporting material for the manuscript entitled "Biochar selection for Escherichia coli removal in stormwater biofilters" submitted as a technical note to Journal of Environmental Engineering.
DOI: 10.6084/m9.figshare.12818672
title: Dataset for 3-D density structure of the lunar mascon basins

description: Mascon (i.e., Mass concentration) refers to an excess distribution of mass on or beneath the surface of an astronomical body, which is characterized by a large positive gravitational anomaly. On the Moon, there are widespread mascons with basin shape, called mascon basins. Study of the mass distribution of mascon basins is the key to infer their formation and evolution. We proposed an improved geophysical method to study the subsurface mascons structures. Our results suggest that mass excesses are found beneath the mascon basins. Surrounding the mass excesses of the mascon basins, there are rings of mass losses, extending from the near-surface to the lunar crust-mantle interface. These features support the forming process of a mascon basin: firstly meteorites hit the Moon and form a bowl-shaped crater, then the crash derives the lunar mantle material upwelling and fills the crater, forming the mass excesses, and finally the broken crustal material after hitting heaps up surrounding the crater, which thickens the lunar crust and forms the mass loss. In addition, the upper boundaries of mass excesses of some mascon basins are concave downward, like a valley. The feature is first observed and fits well with the crust-mantle interface. This could be the bending under the pressure of overlying magma.
DOI: 10.6084/m9.figshare.12818702
title: QM_137k_training.pkl.gz

description: This dataset contains training data for the multi-task constraining model for the QM descriptors on-the-fly computations. https://github.com/yanfeiguan/chemprop