cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12879761.v13
title: Additional file of Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi

description: Additional file of Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi
DOI: 10.6084/m9.figshare.7948949
title: gVCF_NA18555

description: 1000 Genomes gVCF mapped to hs37d5 for NA18555. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7948967.v1
title: gVCF_NA20862

description: 1000 Genomes gVCF mapped to hs37d5 for NA20862. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7948943
title: gVCF_NA18553

description: 1000 Genomes gVCF mapped to hs37d5 for NA18553. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7948946
title: gVCF_NA20861

description: 1000 Genomes gVCF mapped to hs37d5 for NA20861. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7948949.v1
title: gVCF_NA18555

description: 1000 Genomes gVCF mapped to hs37d5 for NA18555. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7948931
title: The Effect of the Detection Engagement and Savoring Positivity (DESP) Task on Eye-tracking of Attention

description: Data of two experiments testing the effect of the DESP task on Eye-tracking of Attention <br>
DOI: 10.6084/m9.figshare.7948940
title: gVCF_NA20859

description: 1000 Genomes gVCF mapped to hs37d5 for NA20859. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7948943.v1
title: gVCF_NA18553

description: 1000 Genomes gVCF mapped to hs37d5 for NA18553. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7948931.v1
title: The Effect of the Detection Engagement and Savoring Positivity (DESP) Task on Eye-tracking of Attention

description: Data of two experiments testing the effect of the DESP task on Eye-tracking of Attention <br>
DOI: 10.6084/m9.figshare.7948940.v1
title: gVCF_NA20859

description: 1000 Genomes gVCF mapped to hs37d5 for NA20859. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7948169
title: gVCF_NA20858

description: 1000 Genomes gVCF mapped to hs37d5 for NA20858. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7948166
title: Table S3 from Molecular convergence and positive selection associated with the evolution of symbiont transmission mode in stony corals

description: Supplementary table containing list of genes passing branch site test significance threshold and exhibiting at least one convergence event
DOI: 10.6084/m9.figshare.7948160
title: Table S2 from Molecular convergence and positive selection associated with the evolution of symbiont transmission mode in stony corals

description: Supplementary table containing list of genes passing branch site test significance threshold
DOI: 10.6084/m9.figshare.7948163
title: Table S1 from Molecular convergence and positive selection associated with the evolution of symbiont transmission mode in stony corals

description: Supplementary table listing sources of transcriptomes used in the present study
DOI: 10.6084/m9.figshare.7948166.v1
title: Table S3 from Molecular convergence and positive selection associated with the evolution of symbiont transmission mode in stony corals

description: Supplementary table containing list of genes passing branch site test significance threshold and exhibiting at least one convergence event
DOI: 10.6084/m9.figshare.7948163.v1
title: Table S1 from Molecular convergence and positive selection associated with the evolution of symbiont transmission mode in stony corals

description: Supplementary table listing sources of transcriptomes used in the present study
DOI: 10.6084/m9.figshare.7948154
title: Table S4 from Molecular convergence and positive selection associated with the evolution of symbiont transmission mode in stony corals

description: Supplementary table containing list of genes in which specific convergence event was also site exceeding branch site test significance threshold
DOI: 10.6084/m9.figshare.7948160.v1
title: Table S2 from Molecular convergence and positive selection associated with the evolution of symbiont transmission mode in stony corals

description: Supplementary table containing list of genes passing branch site test significance threshold
DOI: 10.6084/m9.figshare.7947500
title: gVCF_NA18552

description: 1000 Genomes gVCF mapped to hs37d5 for NA18552. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946837
title: RNAseq of midbody-fed cells

description: HeLa cells were fed GFP-midbodies, incubated for 24 hours, and flow sorted into GFP- and GFP+ populations. RNAsequencing was performed as described
DOI: 10.6084/m9.figshare.7947128
title: gVCF_NA20856

description: 1000 Genomes gVCF mapped to hs37d5 for NA20856. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879809
title: Additional file 8 of Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi

description: Additional file 8:The list of genes containing nsSNPs that were reported as trait-associated in other cattle breeds. (XLSX 54 KB)
DOI: 10.6084/m9.figshare.7948154.v1
title: Table S4 from Molecular convergence and positive selection associated with the evolution of symbiont transmission mode in stony corals

description: Supplementary table containing list of genes in which specific convergence event was also site exceeding branch site test significance threshold
DOI: 10.6084/m9.figshare.12879809.v1
title: Additional file 8 of Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi

description: Additional file 8:The list of genes containing nsSNPs that were reported as trait-associated in other cattle breeds. (XLSX 54 KB)
DOI: 10.6084/m9.figshare.12879803.v1
title: Additional file 6 of Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi

description: Additional file 6:The list of genes containing nsSNPs. The list of genes containing nsSNPs along with the accession numbers (ss number). (XLSX 404 KB)
DOI: 10.6084/m9.figshare.7947128.v1
title: gVCF_NA20856

description: 1000 Genomes gVCF mapped to hs37d5 for NA20856. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879761.v15
title: Additional file of Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi

description: Additional file of Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi
DOI: 10.6084/m9.figshare.12879803
title: Additional file 6 of Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi

description: Additional file 6:The list of genes containing nsSNPs. The list of genes containing nsSNPs along with the accession numbers (ss number). (XLSX 404 KB)
DOI: 10.6084/m9.figshare.7946813
title: gVCF_NA18550

description: 1000 Genomes gVCF mapped to hs37d5 for NA18550. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946831
title: gVCF_NA20854

description: 1000 Genomes gVCF mapped to hs37d5 for NA20854. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946831.v1
title: gVCF_NA20854

description: 1000 Genomes gVCF mapped to hs37d5 for NA20854. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946837.v1
title: RNAseq of midbody-fed cells

description: HeLa cells were fed GFP-midbodies, incubated for 24 hours, and flow sorted into GFP- and GFP+ populations. RNAsequencing was performed as described
DOI: 10.6084/m9.figshare.7946792
title: gVCF_NA20852

description: 1000 Genomes gVCF mapped to hs37d5 for NA20852. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946810
title: gVCF_NA20853

description: 1000 Genomes gVCF mapped to hs37d5 for NA20853. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946810.v1
title: gVCF_NA20853

description: 1000 Genomes gVCF mapped to hs37d5 for NA20853. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946813.v1
title: gVCF_NA18550

description: 1000 Genomes gVCF mapped to hs37d5 for NA18550. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946789
title: Optimal designs with axial values

description: We introduce a modification to the coordinate-exchange algorithm for generating optimal experimental designs that incorporates off-face axial value runs similar to a central composite design (CCD). This improvement addresses a weakness of current optimal designs relative to classical designs: the superior properties of CCDs with off-face axial values relative to equal-sized optimal designs that are constrained to the cuboidal experimental design region. CCDs tend to have significantly less collinearity among quadratic effects, which results in higher power for quadratic terms, better <i>D</i>-efficiency, and lower average prediction variance (i.e., <i>I</i>-optimality). Optimal designs offer greater flexibility in design size, model specification, and the ability to incorporate categorical factors. By incorporating axial values into an optimal design algorithm, the strengths of both approaches can be combined in a single design that generally outperforms both CCDs and current optimal designs.
DOI: 10.6084/m9.figshare.12879815.v1
title: Additional file of Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality

description: Additional file of Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality
DOI: 10.6084/m9.figshare.7946780
title: gVCF_NA18549

description: 1000 Genomes gVCF mapped to hs37d5 for NA18549. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946741
title: gVCF_NA18548

description: 1000 Genomes gVCF mapped to hs37d5 for NA18548. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946774
title: gVCF_NA20851

description: 1000 Genomes gVCF mapped to hs37d5 for NA20851. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946738
title: gVCF_NA20850

description: 1000 Genomes gVCF mapped to hs37d5 for NA20850. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879821.v1
title: Additional file 2 of Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality

description: Additional file 2:Genes differentially expressed between the G+ and G- chickens generated from the F2FL population. Results were expressed as G+ to G- ratio of the gene expression. The p value of each gene was corrected according to the Benjamini-Hochberg method controlling the False Discovery Rate [40]. Difference in gene expression was considered significant if its adjusted p value was p &lt; 0.05. (XLS 66 KB)
DOI: 10.6084/m9.figshare.7946774.v1
title: gVCF_NA20851

description: 1000 Genomes gVCF mapped to hs37d5 for NA20851. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946780.v1
title: gVCF_NA18549

description: 1000 Genomes gVCF mapped to hs37d5 for NA18549. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879815.v2
title: Additional file of Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality

description: Additional file of Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality
DOI: 10.6084/m9.figshare.12879818.v1
title: Additional file 1 of Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality

description: Additional file 1:Genes differentially expressed between Fat and Lean chickens. Results were expressed as the Fat to Lean ratio of the gene expression. The p value of each gene was adjusted according to the Benjamini-Hochberg method controlling the False Discovery Rate [40]. Difference in gene expression was considered significant if its adjusted p value was p &lt; 0.05. (XLS 56 KB)
DOI: 10.25380/iastate.7946732
title: Evidence of improved reporting of swine vaccination trials in the post-REFLECT statement publication period.

description: The objective of this study was to describe the proportion of reporting the method used to assign study units to treatment groups; the proportion of reporting a random allocation approach; the proportion of reporting 18 REFLECT items; and the proportion of having a low risk-of-bias assessment in swine vaccination trial studies published after the REFLECT statement, compared to studies published before. The study population was 61 studies which evaluated vaccines targeted at pathogens affecting swine health or pork safety. Two reviewers assessed the reporting of 18/22 REFLECT items and five risk-of-bias domains. Authors reported the method used to allocate experimental units in 33/42 (79%) and 14/19 (74%) studies published prior and following REFLECT, respectively. There has been a substantial shift in the reporting of allocation approaches. Before 2011, only 2 of 25 (8%) studies that reported using random allocation, provided supporting evidence, and this increased in studies published between 2011-2017 to 4 of 6 (66%). Before 2011, 8 of 33 (24%) studies reported using systematic allocation, and between 2011 and 2017 6 of 14 (43%) studies reported using systematic allocation. There has also been an increase in the prevalence of reporting for 14 of the 18 REFLECT items. There is an increase in the number of studies reporting evidence to support true randomization to group, and data that suggests few baseline imbalances. Data from this study suggests reporting of swine vaccination trials is improving, which may be due to researchers having more access to better quality information.
DOI: 10.6084/m9.figshare.12879821
title: Additional file 2 of Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality

description: Additional file 2:Genes differentially expressed between the G+ and G- chickens generated from the F2FL population. Results were expressed as G+ to G- ratio of the gene expression. The p value of each gene was corrected according to the Benjamini-Hochberg method controlling the False Discovery Rate [40]. Difference in gene expression was considered significant if its adjusted p value was p &lt; 0.05. (XLS 66 KB)
DOI: 10.6084/m9.figshare.7946738.v1
title: gVCF_NA20850

description: 1000 Genomes gVCF mapped to hs37d5 for NA20850. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879818
title: Additional file 1 of Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality

description: Additional file 1:Genes differentially expressed between Fat and Lean chickens. Results were expressed as the Fat to Lean ratio of the gene expression. The p value of each gene was adjusted according to the Benjamini-Hochberg method controlling the False Discovery Rate [40]. Difference in gene expression was considered significant if its adjusted p value was p &lt; 0.05. (XLS 56 KB)
DOI: 10.6084/m9.figshare.7946720
title: gVCF_NA18547

description: 1000 Genomes gVCF mapped to hs37d5 for NA18547. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946717
title: gVCF_NA20849

description: 1000 Genomes gVCF mapped to hs37d5 for NA20849. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.25380/iastate.7946732.v1
title: Evidence of improved reporting of swine vaccination trials in the post-REFLECT statement publication period.

description: The objective of this study was to describe the proportion of reporting the method used to assign study units to treatment groups; the proportion of reporting a random allocation approach; the proportion of reporting 18 REFLECT items; and the proportion of having a low risk-of-bias assessment in swine vaccination trial studies published after the REFLECT statement, compared to studies published before. The study population was 61 studies which evaluated vaccines targeted at pathogens affecting swine health or pork safety. Two reviewers assessed the reporting of 18/22 REFLECT items and five risk-of-bias domains. Authors reported the method used to allocate experimental units in 33/42 (79%) and 14/19 (74%) studies published prior and following REFLECT, respectively. There has been a substantial shift in the reporting of allocation approaches. Before 2011, only 2 of 25 (8%) studies that reported using random allocation, provided supporting evidence, and this increased in studies published between 2011-2017 to 4 of 6 (66%). Before 2011, 8 of 33 (24%) studies reported using systematic allocation, and between 2011 and 2017 6 of 14 (43%) studies reported using systematic allocation. There has also been an increase in the prevalence of reporting for 14 of the 18 REFLECT items. There is an increase in the number of studies reporting evidence to support true randomization to group, and data that suggests few baseline imbalances. Data from this study suggests reporting of swine vaccination trials is improving, which may be due to researchers having more access to better quality information.
DOI: 10.6084/m9.figshare.7946720.v1
title: gVCF_NA18547

description: 1000 Genomes gVCF mapped to hs37d5 for NA18547. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879839.v1
title: Additional file of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)
DOI: 10.6084/m9.figshare.12879839.v3
title: Additional file of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)
DOI: 10.6084/m9.figshare.12879839.v2
title: Additional file of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)
DOI: 10.6084/m9.figshare.7946666
title: gVCF_NA18546

description: 1000 Genomes gVCF mapped to hs37d5 for NA18546. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946672
title: gVCF_NA20847

description: 1000 Genomes gVCF mapped to hs37d5 for NA20847. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946627
title: gVCF_NA20846

description: 1000 Genomes gVCF mapped to hs37d5 for NA20846. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879842.v1
title: Additional file 1 of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file 1:Gene Ontology (GO IDs) identifiers for three libraries. Mapping and annotation steps in Blast2GO program resulted in providing GO IDs to individual ESTs in each dataset of the three libraries, TDa 95-0310, TDa 95-0328 and TDa 87-01091. (XLS 7 MB)
DOI: 10.6084/m9.figshare.12879848
title: Additional file 3 of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file 3:Differential gene expression among the three libraries. The summary of differential gene expression analysis providing the gene information that might be potentially over-expressed or under-expressed compared to other libraries. The sheet 1 of the file has expression differences between TDa 87-01091 compared with TDa 95-0310 and the sheet 2 has expression differences between TDa 95/0328 compared with TDa 95/0310 while sheet 3 has expression differences between TDa 87-01091 compared with TDa 95-0328. (XLS 306 KB)
DOI: 10.6084/m9.figshare.12879842
title: Additional file 1 of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file 1:Gene Ontology (GO IDs) identifiers for three libraries. Mapping and annotation steps in Blast2GO program resulted in providing GO IDs to individual ESTs in each dataset of the three libraries, TDa 95-0310, TDa 95-0328 and TDa 87-01091. (XLS 7 MB)
DOI: 10.6084/m9.figshare.12879848.v1
title: Additional file 3 of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file 3:Differential gene expression among the three libraries. The summary of differential gene expression analysis providing the gene information that might be potentially over-expressed or under-expressed compared to other libraries. The sheet 1 of the file has expression differences between TDa 87-01091 compared with TDa 95-0310 and the sheet 2 has expression differences between TDa 95/0328 compared with TDa 95/0310 while sheet 3 has expression differences between TDa 87-01091 compared with TDa 95-0328. (XLS 306 KB)
DOI: 10.6084/m9.figshare.7946672.v1
title: gVCF_NA20847

description: 1000 Genomes gVCF mapped to hs37d5 for NA20847. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12879839.v4
title: Additional file of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)
DOI: 10.6084/m9.figshare.12879851.v1
title: Additional file 4 of Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

description: Additional file 4:Simple Sequence Repeat (SSR) primers generated from the project. The SSR primers generated from library TDa 95-310, TDa 95-0328 and TDa 87-01091 were respectively presented on sheet 1, 2 and 3 of the file. (XLS 992 KB)
DOI: 10.6084/m9.figshare.7946600
title: gVCF_NA18545

description: 1000 Genomes gVCF mapped to hs37d5 for NA18545. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7946621
title: Orthogonal blocking arrangements for 24-run and 28-run two-level designs

description: Much research has been done concerning 24-run orthogonal two-level designs involving 3–23 factors and 28-run orthogonal two-level designs involving 3–27 factors. The focus of this research was on completely randomized screening designs and led to lists of recommended designs for each number of factors. When using the recommended designs, there is either no aliasing between the main effects and the two-factor interaction effects or only a limited amount. Among all designs with this attractive property, the recommended designs minimize the aliasing among the two-factor interaction effects. It is, however, unclear which 24- and 28-run designs are best when complete randomization is infeasible and the designs have to be arranged in blocks. In this article, we address this issue and present the best arrangements of 24-run designs in 3, 4, and 6 blocks and the best arrangements of 28-run designs in 7 blocks.