cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5517606
title: SSAM-lite test data

description: Spatially resolved transcriptomics datasets prepared from different publications to be used as sample data sets for the SSAM-lite tool. Each folder contains a dataset including: one file for mRNA locations, formatted as a comma separated file adhering to the DecodedSpots format defined by the Starfish pipeline (https://spacetx-starfish.readthedocs.io/en/mcai-api-additions/help_and_reference/spacetx-format/output_formats/DecodedSpots/index.html). This format is intuitive, with fields for the target mRNA, the x-coordinate and the y-coordinate. a gene signature file, containing expected mRNA expression profiles for cell types, formatted as a comma separated file with rows as cell types, columns as genes, with the matrix populated with numerical or binary values associating mRNA expression to cell types. a csv for a custom color palette for the provided cell types. and a README referencing the original publication the data was retrieved from as well as some dataset specifications. Datsets specifications: Codeluppi_osmFISH method: osmFISH tissue: mouse brain somatosensory cortex mRNA spots: 1802589 genes: 33 signatures: 31 cell types DOI: 10.1038/s41592-018-0175-z Tosti_ISS_Pancreas method: ISS tissue: human pancreas mRNA spots: 461078 genes: 138 signatures: 16 cell types DOI: 10.1053/j.gastro.2020.11.010
DOI: 10.5281/zenodo.5596856
title: AndyData-lab-onePersonTeleoperatingICub

description: This dataset contains physical measurements of a human operator teleoperating the humanoid robot iCub.<br> The operator controlled the robot while performing different tasks: reaching a low/mid-height target with the right hand, reaching a high target with the right hand, picking up a box located at different locations and placing the box at different locations.<br> The operator's whole-body kinematics was recorded with inertial motion capture systems.<br> All data files are in csv format. Training and validation data were used to learn movement primitives for the whole-body trajectories and were acquired when teleoperating the robot in a local network with ideally no delay. Compensated data show the whole-body trajectories used to control the robot in non-ideal networks affected by delays.<br> A detailed description of how the data were collected and/or generated is available in the paper associated with the dataset: "Prescient teleoperation of humanoid robots" (Penco et al., hal preprint) https://hal.archives-ouvertes.fr/hal-?/document
DOI: 10.6084/m9.figshare.13241237
title: Use of recurrence plots for identification and extraction of patterns in humpback whale song recordings

description: Humpback whale song is comprised of well-structured distinct levels of organisation: combinations of sounds, repetition of combinations, and a sequence of repetitions, which have no clear silent intervals. This continuous sound output can be hard to delimit, rather, it could be interpreted as a long series of states of a system. Recurrence plots are graphical representations of such series of states and have been used to describe animal behaviour previously. Here, we aim to apply this tool to visualise and recognise structures traditionally used in inferences about behaviour (songs and themes) in the series of units manually extracted from recordings of humpback whales. Data from the Abrolhos bank, Brazil were subjected to these analyses. Our analytical tool has proven efficient in identifying themes and songs from continuous recordings avoiding some of the human perception bias and caveats. Furthermore, our song extraction is robust to errors coming from both manual and automated transcriptions, constructing a level of description largely independent of the first stage of analysis.
DOI: 10.6084/m9.figshare.13241237.v1
title: Use of recurrence plots for identification and extraction of patterns in humpback whale song recordings

description: Humpback whale song is comprised of well-structured distinct levels of organisation: combinations of sounds, repetition of combinations, and a sequence of repetitions, which have no clear silent intervals. This continuous sound output can be hard to delimit, rather, it could be interpreted as a long series of states of a system. Recurrence plots are graphical representations of such series of states and have been used to describe animal behaviour previously. Here, we aim to apply this tool to visualise and recognise structures traditionally used in inferences about behaviour (songs and themes) in the series of units manually extracted from recordings of humpback whales. Data from the Abrolhos bank, Brazil were subjected to these analyses. Our analytical tool has proven efficient in identifying themes and songs from continuous recordings avoiding some of the human perception bias and caveats. Furthermore, our song extraction is robust to errors coming from both manual and automated transcriptions, constructing a level of description largely independent of the first stage of analysis.
DOI: 10.6084/m9.figshare.13176016
title: Sound production in male and female corkwing wrasses and its relation to visual behaviour

description: In fish, social interactions are commonly accompanied by acoustic signalling. Males have been found to produce sounds in a large range of species, but female sounds have received considerably less attention. But even in males, there remain significant taxonomical gaps, e.g. in one of the largest fish families, the wrasses. Here, we investigate sound production in territorial males and females of the corkwing wrasse in a field study in Norway. We complemented an in-depth analysis of the visual and acoustic behavioural repertoire of territorial males by descriptions of female behaviours. Males as well as females produced sounds in courtship and agonistic contexts. We recorded four types of sounds and found significant differences between male and female sound properties. We hereby provide one of the first descriptions of sound production in wrasses and, to our knowledge, the first one to also investigate female sound production. Our study shows that wrasses are an underappreciated family when it comes to sound production. With a repertoire of four different calls, corkwing wrasses are remarkably versatile among fishes. Our results highlight the potential and importance of future research about sound communication in neglected taxa, and in both sexes.
DOI: 10.6084/m9.figshare.13176016.v1
title: Sound production in male and female corkwing wrasses and its relation to visual behaviour

description: In fish, social interactions are commonly accompanied by acoustic signalling. Males have been found to produce sounds in a large range of species, but female sounds have received considerably less attention. But even in males, there remain significant taxonomical gaps, e.g. in one of the largest fish families, the wrasses. Here, we investigate sound production in territorial males and females of the corkwing wrasse in a field study in Norway. We complemented an in-depth analysis of the visual and acoustic behavioural repertoire of territorial males by descriptions of female behaviours. Males as well as females produced sounds in courtship and agonistic contexts. We recorded four types of sounds and found significant differences between male and female sound properties. We hereby provide one of the first descriptions of sound production in wrasses and, to our knowledge, the first one to also investigate female sound production. Our study shows that wrasses are an underappreciated family when it comes to sound production. With a repertoire of four different calls, corkwing wrasses are remarkably versatile among fishes. Our results highlight the potential and importance of future research about sound communication in neglected taxa, and in both sexes.
DOI: 10.5522/04/14979990.v1
title: Protein structures predicted using DMPfold2

description: This dataset comprises predicted protein structures from the paper "Fast end-to-end protein structure prediction enables high-throughput exploration of uncharacterised proteins". Structures were predicted using DMPfold2.<br><br>BFD_1.3M.hdf5 contains all the models from the set of 1.3M that were generated. The models can be retrieved from this file using the provided hdf5_extract.py script and the list of IDs in bfdfold_1.3M_target_ids.csv.<br><br>Also provided are tarballs of the models and sequence alignments for the 5193 Pfam families modelled in the paper, as well as for the set of 255 Pfams with released structures used for comparisons against DMPfold1 and C-I-TASSER.
DOI: 10.5522/04/16547644
title: Supporting data for the paper Phase Separation In the E coli Outer Membrane

description: For details of the dataset, see ReadMe.txt<br>The raw data provided can be used to produce the figures provided in the text, using analysis protocols described in the readme.txt or the methods section of the paper (10.1073/pnas.2112237118)
DOI: 10.5522/04/16547644.v1
title: Supporting data for the paper Phase Separation In the E coli Outer Membrane

description: For details of the dataset, see ReadMe.txt<br>The raw data provided can be used to produce the figures provided in the text, using analysis protocols described in the readme.txt or the methods section of the paper (10.1073/pnas.2112237118)
DOI: 10.5517/ccdc.csd.cc252yrz
title: CCDC 1998841: Experimental Crystal Structure Determination

description: Related Article: Wei Guo, Shichao Du, Shijie Xu, Yan Wang, Lina Jia, Shiyuan Liu, Songgu Wu, Junbo Gong, Jingkang Wang|2021|Cryst.Growth Des.|21|1762|doi:10.1021/acs.cgd.0c01648
DOI: 10.5517/ccdc.csd.cc256sck
title: CCDC 2002518: Experimental Crystal Structure Determination

description: Related Article: Wei Guo, Shichao Du, Shijie Xu, Yan Wang, Lina Jia, Shiyuan Liu, Songgu Wu, Junbo Gong, Jingkang Wang|2021|Cryst.Growth Des.|21|1762|doi:10.1021/acs.cgd.0c01648
DOI: 10.5517/ccdc.csd.cc275cqj
title: CCDC 2060747: Experimental Crystal Structure Determination

description: Related Article: Yerlan Melsuly Suleimen, Ahmed M. Metwaly, Ahmad E. Mostafa, Eslam B. Elkaeed, Hong-Wei Liu, Buddha Bahadur Basnet, Raigul Nurbekkyzy Suleimen, Margarita Yulayevna Ishmuratova, Koblandy Muboryakovich Turdybekov, Kristof Van Hecke|2021|J.Chem.|2021|10|doi:10.1155/2021/5529786
DOI: 10.5517/ccdc.csd.cc27t6pz
title: CCDC 2079811: Experimental Crystal Structure Determination

description: Related Article: hua zhang|2021|CSD Communication|||
description: Related Article: Hua Zhang, Bei Wang, Hong Xu, Fu-Yu Li, Ji-Yu Wang|2021|Org.Chem.Front.|8|6019|doi:10.1039/D1QO01041G
DOI: 10.5517/ccdc.csd.cc27t6q0
title: CCDC 2079812: Experimental Crystal Structure Determination

description: Related Article: hua zhang|2021|CSD Communication|||
description: Related Article: Hua Zhang, Bei Wang, Hong Xu, Fu-Yu Li, Ji-Yu Wang|2021|Org.Chem.Front.|8|6019|doi:10.1039/D1QO01041G
DOI: 10.5517/ccdc.csd.cc27t6r1
title: CCDC 2079813: Experimental Crystal Structure Determination

description: Related Article: hua zhang|2021|CSD Communication|||
description: Related Article: Hua Zhang, Bei Wang, Hong Xu, Fu-Yu Li, Ji-Yu Wang|2021|Org.Chem.Front.|8|6019|doi:10.1039/D1QO01041G
DOI: 10.5517/ccdc.csd.cc27twhg
title: CCDC 2080456: Experimental Crystal Structure Determination

description: Related Article: Xin-Rui Chen, Qian-Wen Zhang, Ge-Ge Tao, Jun Xuan, Hong-Ping Zhou, Yu-Peng Tian, Fei Li|2021|Org.Chem.Front.|8|5994|doi:10.1039/D1QO01058A
DOI: 10.5517/ccdc.csd.cc27twml
title: CCDC 2080460: Experimental Crystal Structure Determination

description: Related Article: Xin-Rui Chen, Qian-Wen Zhang, Ge-Ge Tao, Jun Xuan, Hong-Ping Zhou, Yu-Peng Tian, Fei Li|2021|Org.Chem.Front.|8|5994|doi:10.1039/D1QO01058A
DOI: 10.5517/ccdc.csd.cc27twqp
title: CCDC 2080463: Experimental Crystal Structure Determination

description: Related Article: Xin-Rui Chen, Qian-Wen Zhang, Ge-Ge Tao, Jun Xuan, Hong-Ping Zhou, Yu-Peng Tian, Fei Li|2021|Org.Chem.Front.|8|5994|doi:10.1039/D1QO01058A
DOI: 10.5517/ccdc.csd.cc27tw76
title: CCDC 2080448: Experimental Crystal Structure Determination

description: Related Article: Xin-Rui Chen, Qian-Wen Zhang, Ge-Ge Tao, Jun Xuan, Hong-Ping Zhou, Yu-Peng Tian, Fei Li|2021|Org.Chem.Front.|8|5994|doi:10.1039/D1QO01058A
DOI: 10.5517/ccdc.csd.cc27whg3
title: CCDC 2082005: Experimental Crystal Structure Determination

description: Related Article: Li-Ping Chen, Jiang-Fei Chen, Yu-Jiao Zhang, Xing-Yi He, Ya-Fei Han, Yu-Ting Xiao, Gui-Fen Lv, Xin Lu, Fan Teng, Qing Sun, Jin-Heng Li|2021|Org.Chem.Front.|8|6067|doi:10.1039/D1QO01147B
DOI: 10.5517/ccdc.csd.cc280v5b
title: CCDC 2086181: Experimental Crystal Structure Determination

description: Related Article: Patrizio Orecchia, Desislava Slavcheva Petkova, Roland Goetz, Frank Rominger, A. Stephen K. Hashmi, Thomas Schaub|2021|Green Chemistry|23|8169|doi:10.1039/D1GC02602J
DOI: 10.5517/ccdc.csd.cc280v7d
title: CCDC 2086183: Experimental Crystal Structure Determination

description: Related Article: Patrizio Orecchia, Desislava Slavcheva Petkova, Roland Goetz, Frank Rominger, A. Stephen K. Hashmi, Thomas Schaub|2021|Green Chemistry|23|8169|doi:10.1039/D1GC02602J
DOI: 10.5517/ccdc.csd.cc282lnm
title: CCDC 2087870: Experimental Crystal Structure Determination

description: Related Article: Jugal Kishore Rai Deka, Debajit Kalita, Biswajit Sahariah, Bani Kanta Sarma|2021|Chem.Commun.|57|11236|doi:10.1039/D1CC04533D
DOI: 10.5281/zenodo.5600824
title: Fast response of Amazon rivers to Quaternary climate cycles

description: Data table of Amazon rivers. Data sources are described in section 2.2 of the accompanying manuscript.
DOI: 10.5281/zenodo.5600823
title: Fast response of Amazon rivers to Quaternary climate cycles

description: Data table of Amazon rivers. Data sources are described in section 2.2 of the accompanying manuscript.
DOI: 10.6084/m9.figshare.16877122
title: Global dataset beneficial plants

description: Dataset used in Molina-Venegas (in review) Conserving evolutionarily distinct species is critical to safeguard human well-being.
DOI: 10.6084/m9.figshare.14776395
title: Single center research：Association between HLA-B and HLA-DR genetic polymorphisms and systemic lupus erythematosus in Yunnan Han patients in China

description: We explored the association between <i>HLA-B</i> and <i>HLA-DR</i> genetic polymorphisms and clinical characteristics of systemic lupus erythematosus (SLE) in Yunnan Han patients in China. <b>Method</b> Data was collected from 295 Han patients and 265 healthy Han people from Yunnan province who were admitted to the Rheumatology and Immunology department of First Affiliated Hospital of Kunming Medical University from September 2015 to April 2021. Clinical data, including manifestation and laboratory data, were recorded. PCR was used to detect <i>HLA-B</i> and <i>HLA-DR</i> genotypes in patients and healthy controls (HCs), and frequencies of allele and haplotype were compared to explore the association between genotypes and SLE clinical features.
DOI: 10.6084/m9.figshare.14776395.v2
title: Single center research：Association between HLA-B and HLA-DR genetic polymorphisms and systemic lupus erythematosus in Yunnan Han patients in China

description: We explored the association between <i>HLA-B</i> and <i>HLA-DR</i> genetic polymorphisms and clinical characteristics of systemic lupus erythematosus (SLE) in Yunnan Han patients in China. <b>Method</b> Data was collected from 295 Han patients and 265 healthy Han people from Yunnan province who were admitted to the Rheumatology and Immunology department of First Affiliated Hospital of Kunming Medical University from September 2015 to April 2021. Clinical data, including manifestation and laboratory data, were recorded. PCR was used to detect <i>HLA-B</i> and <i>HLA-DR</i> genotypes in patients and healthy controls (HCs), and frequencies of allele and haplotype were compared to explore the association between genotypes and SLE clinical features.
DOI: 10.6084/m9.figshare.14776395.v1
title: Single center research：Association between HLA-B and HLA-DR genetic polymorphisms and systemic lupus erythematosus in Yunnan Han patients in China

description: We explored the association between <i>HLA-B</i> and <i>HLA-DR</i> genetic polymorphisms and clinical characteristics of systemic lupus erythematosus (SLE) in Yunnan Han patients in China. <b>Method</b> Data was collected from 295 Han patients and 265 healthy Han people from Yunnan province who were admitted to the Rheumatology and Immunology department of First Affiliated Hospital of Kunming Medical University from September 2015 to April 2021. Clinical data, including manifestation and laboratory data, were recorded. PCR was used to detect <i>HLA-B</i> and <i>HLA-DR</i> genotypes in patients and healthy controls (HCs), and frequencies of allele and haplotype were compared to explore the association between genotypes and SLE clinical features.
DOI: 10.5281/zenodo.4784282
title: Causal3DIdent

description: Update on 3DIdent, where we introduce six additional object classes (Hare, Dragon, Cow, Armadillo, Horse, and Head), and impose a causal graph over the latent variables. For further details, see Appendix B.
DOI: 10.5281/zenodo.4783302
title: Causal3DIdent

description: Update on 3DIdent, where we introduce six additional object classes (Hare, Dragon, Cow, Armadillo, Horse, and Head), and impose a causal graph over the latent variables. For further details, see Appendix B.
DOI: 10.5281/zenodo.5576086
title: 1D scan geometries for Fig. 2 and 3

description: Raw data for the ManyHF paper (under preparation as "ManyHF: A Pragmatic Automated Method of Finding Lower Energy Hartree-Fock Solutions for Potential Energy Surface Development")
DOI: 10.6084/m9.figshare.16877134
title: Supplementary Material – Analysis of spontaneous vegetation in semi-arid cattle fields of the middle valley of Río Negro

description: <b>Table S1 – </b>List of families, genera and species identified for each sampling site. <b>Appendix S2 – </b>List of reference specimens examined.<br>see Original Paper: http://dx.doi.org/10.1590/2175-7860202172122<br>
DOI: 10.6084/m9.figshare.16877134.v1
title: Supplementary Material – Analysis of spontaneous vegetation in semi-arid cattle fields of the middle valley of Río Negro

description: <b>Table S1 – </b>List of families, genera and species identified for each sampling site. <b>Appendix S2 – </b>List of reference specimens examined.<br>see Original Paper: http://dx.doi.org/10.1590/2175-7860202172122<br>
DOI: 10.5281/zenodo.5600846
title: Open Science Website Review (Team 2)

description: A document detailing Team 2's analysis of the various websites promoting the concept of open science for the "Open Science" Course and using Zenodo to generate a DOI for the aforementioned document
DOI: 10.5281/zenodo.5600845
title: Open Science Website Review (Team 2)

description: A document detailing Team 2's analysis of the various websites promoting the concept of open science for the "Open Science" Course and using Zenodo to generate a DOI for the aforementioned document
DOI: 10.5281/zenodo.5600858
title: datos CIFAR-10 agregados para experimentación en Matlab con CNNs

description: El fichero .mat contiene los datos agregados en matrices (data, labels) para training y (data_test, labels_test) para test. Se proporciona un pequeño script para entrenamiento de CNNs con estos datos. La referencia a la pagina web original está incluida: https://www.cs.toronto.edu/~kriz/cifar.html
DOI: 10.5281/zenodo.5600857
title: datos CIFAR-10 agregados para experimentación en Matlab con CNNs

description: El fichero .mat contiene los datos agregados en matrices (data, labels) para training y (data_test, labels_test) para test. Se proporciona un pequeño script para entrenamiento de CNNs con estos datos. La referencia a la pagina web original está incluida: https://www.cs.toronto.edu/~kriz/cifar.html
DOI: 10.25345/c5r27p
title: MassIVE MSV000088265 - GNPS Achantostrongylophora ingens Analysis
title: Analysis of the Achantostrongylophora ingens from the Indonesian sea
DOI: 10.15468/ewkkbu
title: Five new species of freshwater crabs of the genera Ghatiana Pati & Sharma, 2014 and Sahyadriana Pati & Thackeray, 2018 from India (Decapoda: Brachyura: Gecarcinucidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pati, Sameer K., Thackeray, Tejas (2021): Five new species of freshwater crabs of the genera Ghatiana Pati & Sharma, 2014 and Sahyadriana Pati & Thackeray, 2018 from India (Decapoda: Brachyura: Gecarcinucidae). Zoosystema 43 (26): 627-647, DOI: 10.5252/zoosystema2021v43a26
DOI: 10.5517/ccdc.csd.cc284b70
title: CCDC 2089531: Experimental Crystal Structure Determination

description: Related Article: Matthew R. Elsby, Scott Y. H. Kim, Stephan N. Steinmann, R. Tom Baker|2021|Dalton Trans.|50|14542|doi:10.1039/D1DT02637B
DOI: 10.5517/ccdc.csd.cc28638w
title: CCDC 2091237: Experimental Crystal Structure Determination

description: Related Article: Julia Jökel, Frauke Nyßen, Daniel Siegmund, Ulf-Peter Apfel|2021|Dalton Trans.|50|14602|doi:10.1039/D1DT02075G
DOI: 10.5517/ccdc.csd.cc28639x
title: CCDC 2091238: Experimental Crystal Structure Determination

description: Related Article: Julia Jökel, Frauke Nyßen, Daniel Siegmund, Ulf-Peter Apfel|2021|Dalton Trans.|50|14602|doi:10.1039/D1DT02075G
DOI: 10.5517/ccdc.csd.cc286gfd
title: CCDC 2091583: Experimental Crystal Structure Determination

description: Related Article: Hao-Zhao Wei, Yin Wei, Min Shi|2021|Chem.Commun.|57|11201|doi:10.1039/D1CC04826K
DOI: 10.5517/ccdc.csd.cc287t7l
title: CCDC 2092879: Experimental Crystal Structure Determination

description: Related Article: Xiao-Yan Zhang, Ya-Ping Shao, Bao-Kuan Guo, Kun Zhang, Fu-Min Zhang, Xiao-Ming Zhang, Yong-Qiang Tu|2021|Chem.Commun.|57|11233|doi:10.1039/D1CC05205E
DOI: 10.5517/ccdc.csd.cc288q9l
title: CCDC 2093749: Experimental Crystal Structure Determination

description: Related Article: Jugal Kishore Rai Deka, Debajit Kalita, Biswajit Sahariah, Bani Kanta Sarma|2021|Chem.Commun.|57|11236|doi:10.1039/D1CC04533D
DOI: 10.6073/pasta/d1abed5732fe4f4b086e092fb85bf431
title: Monthly monitoring fluorescence data for Shark River Slough and Taylor Slough, Everglades National Park, Florida, USA (FCE LTER) for 2012 to Present

description: Dissolved organic matter plays an important role in biogeochemical processes in aquatic environments such as elemental cycling, microbial loop energetics, and the transport of materials across landscapes. Since most of N (&gt; 90%) and P (around 90%) is in the organic form in the oligotrophic subtropical Florida Coastal Everglades (FCE), study of the source and dynamics of dissolved organic matter (DOM) in the ecosystem is crucial for the better understanding of the biogeochemical cycling of nutrients. FCE are composed of estuaries with distinct regions with different biogeochemical processes. Freshwater marsh primarily receives terrestrial input and local autochthonous vegetation production. Mangrove ecotone, nevertheless, is affected by the tidal contributions from Florida Bay and local mangrove production. Florida Bay (FB) is a wedge-shaped shallow oligotrophic estuary which lays south of the Everglades, the bottom of which is covered with a dense biomass of seagrass. The sources of both freshwater and nutrients in FCE are difficult to quantify, owing to the non-point source nature of runoff from the Everglades and the dendritic cross channels in the mangroves. Furthermore, the combination of multiple DOM sources (freshwater marsh vegetation, mangroves, phytoplankton, seagrass, etc.), and the potential seasonal variability of their relative contribution, along with the history of (photo)chemical and microbial diagenetic processing, and complex advective circulation, makes the study of DOM dynamics in FCE particularly difficult using standard schemes of estuarine ecology. Quantitative information of DOM is very useful to investigate the biogeochemical cycling of DOM to a certain degree, however, qualitative information is necessary to better understand the source and dynamics of DOM. Since fluorescence spectroscopic techniques are very sensitive, quick and simple, they have been applied to investigate the fate of DOM in estuaries.