cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.k7q7uf
title: Occurrence Download

description: A dataset listing the 5 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fratercula arctica (Linnaeus, 1758)"
 ]
}

 The dataset's 5 records were derived from 386 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103167-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/jxz-mms-gpm
title: Conchodytes meleagrinae Peters, 1852

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n0k-v68-p1t
title: Periclimenes O. G. Costa, 1844

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/33w-bzy-0na
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a4j-cqx-t3n
title: Lysmata Risso, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6ka-htx-azs
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k3v-twq-f8d
title: Corystes cassivelaunus (Pennant, 1777)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.2wx7jk
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nidularium antoineanum Wawra"
 ]
}

 The dataset includes 190 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103178-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/e34-wjw-j4j
title: Portumnus latipes (Pennant, 1777)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ll1-1am-v0y
title: Xantho poressa (Olivi, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2g9-1fx-zjp
title: Polybius corrugatus (Pennant, 1777)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rc8-xqj-4st
title: Aegaeon cataphractus (Olivi, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zz8-d3s-kpa
title: Inachus Weber, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g4p-d7v-05d
title: Xantho pilipes A. Milne-Edwards, 1867

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8dm-6la-vy9
title: Micropisa ovata Stimpson, 1857

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w7f-vvr-8c2
title: Atergatis dilatatus De Haan, 1835

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cft-3z8-qjd
title: Nobiliella jousseaumei (Nobili, 1906)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zpc-dpr-83l
title: Eurynome aspera (Pennant, 1777)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bnr-39q-z0v
title: Pisa muscosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hww-vtd-xle
title: Xantho hydrophilus (Herbst, 1790)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w48-xp2-2zl
title: Ozius guttatus H. Milne Edwards, 1834

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z52-rjm-vb0
title: Cymo quadrilobatus Miers, 1884

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0b1-c70-z1s
title: Potamalpheops pininsulae Bruce & Iliffe, 1992

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d5l-gz4-cyq
title: Eupilumnus africanus (A. Milne-Edwards, 1867)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ma0-vmx-sxs
title: Coenobita rugosus H. Milne-Edwards, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2q4-1a3-2wr
title: Tiarinia cornigera (Latreille, 1825)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6fh-3kc-93w
title: Cancer pagurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/23c-ln4-csm
title: Pontonia margarita S. I. Smith, 1869

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2tc-yh2-p8h
title: Tiarinia angusta Dana, 1851

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7mn-t2z-l3c
title: Paranchistus ornatus Holthuis, 1952

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b2p-q74-mz3
title: Portumnus latipes (Pennant, 1777)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cgc-3ll-2xj
title: Tiarinia angusta Dana, 1851

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a6g-z87-slz
title: Carpilius maculatus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p82-6y8-ets
title: Xanthidae MacLeay, 1838

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wk2-qfh-x7y
title: Cryptodromia tuberculata Stimpson, 1858

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7w4-0x7-x7c
title: Xantho Leach, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gbb-2pf-67g
title: Pilumnus hirtellus (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kar-mxt-bfl
title: Xantho hydrophilus (Herbst, 1790)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zdh-4ce-gx3
title: Eurynome aspera (Pennant, 1777)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ftp-tzb-kq2
title: Paractaea monodi Guinot, 1969

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x65-lh6-sqj
title: Xantho Leach, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vq4-mf3-pz8
title: Eupilumnus africanus (A. Milne-Edwards, 1867)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.dpsbqp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alysicarpus vaginalis (L.) DC.",
 "Country is Timor-Leste",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103180-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/6ha-a1r-nef
title: Paractaea margaritaria (A. Milne-Edwards, 1867)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nek-ahl-fnx
title: Beccumon maesariang (Ng & Naiyanetr, 1993)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j6z-dfv-fgx
title: Pisidia longicornis (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wf3-lv3-j2r
title: Halicarcinus planatus (Fabricius, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/70w-42w-x3n
title: Paractaea margaritaria (A. Milne-Edwards, 1867)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.ke4eqw
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alysicarpus vaginalis (L.) DC.",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103181-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/mem-vqq-90r
title: Microcassiope minor (Dana, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tnm-tps-h7z
title: Xantho sexdentatus (Miers, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.qw8syd
title: Occurrence Download

description: A dataset containing 441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alysicarpus vaginalis (L.) DC.",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 441 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103182-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/3jn-9ts-5bg
title: Cuapetes amymone (De Man, 1902)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mjt-zye-h8z
title: Macropodia Leach, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a1s-rfa-yjj
title: Micippa thalia (Herbst, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v9j-ngk-3vl
title: Dromia marmorea Forest, 1974

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fzy-q83-xdg
title: Grapsus grapsus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jvq-kge-zak
title: Pisa chiragra (Fabricius, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nh6-2bh-arr
title: Maguimithrax spinosissimus (Lamarck, 1818)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g7b-bcp-3hg
title: Macropodia rostrata (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gv0-q54-fyq
title: Xantho sexdentatus (Miers, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4hz-h4f-rhy
title: Euclosiana obtusifrons (De Haan, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ex6-5w9-rs5
title: Pontonia manningi Fransen, 2000

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7b3-g9g-6g5
title: Cryptosoma cristatum Brullé, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fme-vfw-2g7
title: Euryozius bouvieri (A. Milne-Edwards, 1869)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w1s-72k-c97
title: Dactylonia okai (Kemp, 1922)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b76-t31-s9m
title: Leptodius exaratus (H. Milne Edwards, 1834)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/far-thn-qhs
title: Dromia marmorea Forest, 1974

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b1f-l6c-5fg
title: Afropisa carinimana (Miers, 1879)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1sf-w4h-h5m
title: Euxanthus Dana, 1851

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k3d-pzs-wvf
title: Telmessus cheiragonus (Tilesius, 1815)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f9v-4yx-bzh
title: Pisa chiragra (Fabricius, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z30-cfg-avd
title: Carpilius convexus (Forskål, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/scz-tcj-xpz
title: Carpilius convexus (Forskål, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8dj-5vf-0rz
title: Cryptodromia tuberculata Stimpson, 1858

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8m6-a01-hsf
title: Conchodytes meleagrinae Peters, 1852

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b4e-cyd-hc5
title: Cryptodromia tuberculata Stimpson, 1858

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f6k-n14-n9b
title: Naxioides taurus (Pocock, 1890)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lc9-1nn-2mh
title: Grapsus albolineatus Latreille in Milbert, 1812

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bm2-1g0-41z
title: Hoplophrys oatesii Henderson, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c3r-14g-nls
title: Xanthidae MacLeay, 1838

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6gw-266-r74
title: Pilumnus hirtellus (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r00-hpb-z0k
title: Pilumnus hirtellus (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rk7-kwb-btv
title: Perinia tumida Dana, 1851

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9kj-z46-w74
title: Euxanthus Dana, 1851

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nat-47x-2r1
title: Afropisa carinimana (Miers, 1879)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1rp-am2-skq
title: Cryptodromia tuberculata Stimpson, 1858

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6m2-ev6-dw4
title: Coenobita rugosus H. Milne-Edwards, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s62-7xw-zh8
title: Nanocassiope melanodactylus (A. Milne-Edwards, 1867)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/js7-6qw-pcd
title: Percnon gibbesi (H. Milne Edwards, 1853)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t3j-h5a-5gw
title: Nanocassiope melanodactylus (A. Milne-Edwards, 1867)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0z1-gm0-byc
title: Macropodia macrocheles (A. Milne-Edwards & Bouvier, 1898)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/we6-vtb-5bj
title: Paractaea monodi Guinot, 1969

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kf6-nw8-t06
title: Hippolyte ventricosa H. Milne Edwards, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0ll-rbs-wxl
title: Dromia personata (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2rn-tep-aeq
title: Atergatis floridus (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0hb-fcx-m5n
title: Monodaeus couchii (Couch, 1851)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zdc-cy2-es8
title: Thalamita crenata Rüppell, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8yj-hm7-015
title: Siamthelphusa improvisa (Lanchester, 1902)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wcp-zkg-66q
title: Inachus nanus Manning & Holthuis, 1981

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0wm-67p-w6a
title: Charybdis (Charybdis) japonica (A. Milne-Edwards, 1861)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sg9-tdy-h47
title: Herbstia condyliata (Fabricius, 1787)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xfe-xrr-hae
title: Calappa philargius (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q6l-6ed-a7l
title: Ozius tuberculosus H. Milne Edwards, 1834

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0bm-kah-x4v
title: Calappa philargius (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5yt-nnj-ng5
title: Leucosia anatum (Herbst, 1783)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.10182504
title: Cell State Dependent Alteration of Melanoma Plasticity and Immunity by the Circadian Transcription Factor Bmal1

description: Cell State Dependent Alteration of Melanoma Plasticity and Immunity by the Circadian Transcription Factor Bmal1

Visit the following Github repository for the latest version: https://github.com/labsyspharm/Melanoma_BMAL1_Plasticity

Data Access

Visit the following Zenodo page for instructions on how to access primary image data associated with this publication: Access Laboratory of Systems Pharmacology Datasets on AWS, DOI: 10.5281/zenodo.10223573

AWS Bucket 

To access the data associated with this page you will need the AWS bucket name: lsp-public-data/zhang-2023-melanoma-bmal1-plasticity/

Explore Data

To explore the full-resolution data in a web-browser visit: https://www.cycif.org/data/zang-2023/

Data Index

FILE TYPES AND ACCESS LOCATIONS

Each folder corresponds to a patient sample (N). The following files are available for each patient and are located on Amazon Web Services (AWS).  




N.ome.tif
Stitched multiplex CyCIF image pyramid in ome.tif format


markers.csv
List of all markers in ome.tif image  




FILE LIST

6 cores (with the following conditions: EV 1/2, WT 1/2, and dKLH 1/2) and their corresponding marker .csv files

EV 1/2

LSP12583-EV-1--SOX9-SOX10-KI67.ome.tif

LSP12583-EV-2--SOX9-SOX10-KI67.ome.tif 

LSP12583-EV-1.csv

LSP12583-EV-2.csv 

WT 1/2

LSP12583-WT-1--SOX9-SOX10-KI67.ome.tif 

LSP12583-WT-2--SOX9-SOX10-KI67.ome.tif  

LSP12583-WT-1.csv

LSP12583-WT-2.csv 

dHLH 1/2

LSP12583-dHLH-1--SOX9-SOX10-KI67.ome.tif 

LSP12583-dHLH-2--SOX9-SOX10-KI67.ome.tif 

LSP12583-dHLH-1.csv 

LSP12583-dHLH-2.csv 

Contact

Email tissue-atlas(at)hms.harvard.edu with the subject line "zhang-2023-melanoma-bmal1-plasticity: Data Access" if you experience issues accessing the above S3 buckets. Please include the steps you have already tried to help us troubleshoot.
DOI: 10.5281/zenodo.10182505
title: Cell State Dependent Alteration of Melanoma Plasticity and Immunity by the Circadian Transcription Factor Bmal1

description: Cell State Dependent Alteration of Melanoma Plasticity and Immunity by the Circadian Transcription Factor Bmal1

Visit the following Github repository for the latest version: https://github.com/labsyspharm/Melanoma_BMAL1_Plasticity

Data Access

Visit the following Zenodo page for instructions on how to access primary image data associated with this publication: Access Laboratory of Systems Pharmacology Datasets on AWS, DOI: 10.5281/zenodo.10223573

AWS Bucket 

To access the data associated with this page you will need the AWS bucket name: lsp-public-data/zhang-2023-melanoma-bmal1-plasticity/

Explore Data

To explore the full-resolution data in a web-browser visit: https://www.cycif.org/data/zang-2023/

Data Index

FILE TYPES AND ACCESS LOCATIONS

Each folder corresponds to a patient sample (N). The following files are available for each patient and are located on Amazon Web Services (AWS).  




N.ome.tif
Stitched multiplex CyCIF image pyramid in ome.tif format


markers.csv
List of all markers in ome.tif image  




FILE LIST

6 cores (with the following conditions: EV 1/2, WT 1/2, and dKLH 1/2) and their corresponding marker .csv files

EV 1/2

LSP12583-EV-1--SOX9-SOX10-KI67.ome.tif

LSP12583-EV-2--SOX9-SOX10-KI67.ome.tif 

LSP12583-EV-1.csv

LSP12583-EV-2.csv 

WT 1/2

LSP12583-WT-1--SOX9-SOX10-KI67.ome.tif 

LSP12583-WT-2--SOX9-SOX10-KI67.ome.tif  

LSP12583-WT-1.csv

LSP12583-WT-2.csv 

dHLH 1/2

LSP12583-dHLH-1--SOX9-SOX10-KI67.ome.tif 

LSP12583-dHLH-2--SOX9-SOX10-KI67.ome.tif 

LSP12583-dHLH-1.csv 

LSP12583-dHLH-2.csv 

Contact

Email tissue-atlas(at)hms.harvard.edu with the subject line "zhang-2023-melanoma-bmal1-plasticity: Data Access" if you experience issues accessing the above S3 buckets. Please include the steps you have already tried to help us troubleshoot.
DOI: 10.3535/ks4-ej1-pda
title: Eriphia verrucosa (Forskål, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xd8-n8v-fx6
title: Panopeus chilensis H. Milne Edwards & Lucas, 1843

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/51s-t7k-w8c
title: Dromia erythropus (Edwards in Catesby & Edwards, 1771)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/958-6hf-3mr
title: Maja crispata Risso, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1tp-reh-12x
title: Dromia personata (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3jj-jvc-hmy
title: Micippa platipes Rüppell, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ez5-t5p-bv7
title: Ashtoret picta (Hess, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.