cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.50t9d/1
title: Radial growth of Betula glandulosa after 5 years of simulated warming and browsing

description: Data used for to fit linear mixed-effect models (package lme4, R v. 3.2.3) to assess the effect of nitrogen addition, warmer 
temperatures and browsing intensity on radial growth of Betula glandulosa  (Table 3, figure 3)
DOI: 10.5061/dryad.50t9d/2
title: Aboveground biomass of Betula glandulosa after 5 years of simulated warming and browsing

description: Data used for to fit linear mixed-effect models (package lme4, R v. 3.2.3) to assess the effect of nitrogen addition, warmer 
temperatures and browsing intensity on total aboveground biomass of Betula glandulosa (Table 2 and Figure 2)
DOI: 10.5061/dryad.6d3m0/1
title: Extinction data

description: This data file contains the extinction dynamics. For each culture, at each time point in the experiment, it says whether the culture is alive or extinct. The 'plate' column contains an identifier for the 96-well plate on which the culture was propagated; 'Environment' describes the assay environment; 'Well' is the well in which the culture was propagated; 'Selection' is the selection history of the culture; 'Line' is the line number out of 5 from each selection history; 'Spore' is the spore number out of 4 from each line; 'Replicate' is the replicate out of 3 for each spore; 'State' is  a brief description of the density of the culture as observed under a microscope; 'Time' is the cycle number of the experiment; 'Extinct' is whether the culture is alive (1) or extinct (0).
DOI: 10.5061/dryad.6d3m0/2
title: Yield dynamics

description: This data file contains the yield dynamics. For each culture at each time point it contains the optical density ('absorbance') read at 750 nm. The 'Plate' column contains the identifier of the 96-well in which the culture was propagated; 'Environment' is the assay environment; 'Well' is the well in which the culture was propagated; 'Selection' is the selection history of the culture; 'Line' is the line number out of 5 from each selection history; 'Spore' is the spore number out of 4 from each line; 'Replicate' is the replicate number out of 3 from each spore; 'Time' is the cycle number of the experiment; 'absorbance' is the optical density reading at 750 nm, a proxy for yield.
DOI: 10.5061/dryad.7617b/1
title: Data for a stable population
DOI: 10.5061/dryad.77110/1
title: DryadData_Aug 8 2017

description: Mean individual activity and inactivity measures (proportion of observation time spent active and inactive) for each treatment (removal of 20% most active, 20% most inactive, 20% random workers) and trial (pre-removal, 1 week post-removal, and 2 weeks post-removal). Colony and individual ID as well as individual descriptors (task group and activity class) are also included.
DOI: 10.5061/dryad.7j83s/1
title: Raw data on fossil taxonomy and ages

description: Raw data on fossil taxonomy, first and last appearance dates (FAD, LAD, respectively), and number of occurrences, with ages and references from PBDB and the literature search performed in this study.
DOI: 10.5061/dryad.7j83s/2
title: Table S4. PBDB raw data

description: Raw data and references downloaded from Paleobiology Database
DOI: 10.5061/dryad.7j83s/3
title: R code for Herrera Primate diversification

description: R code to run RPANDA phylogenetic diversification analysis, and fossil data preparation for PYRATE as well as analyses with PALEOTREE
DOI: 10.5061/dryad.7j83s/4
title: Phylogenetic trees from Springer et al. 2012

description: Raw tree files of four phylogenetic trees from Springer et al. 2012 for all primates with different age calibration assumptions
DOI: 10.5061/dryad.7t207/1
title: Data matrix for Unitary Association analyses

description: Data matrix
DOI: 10.5061/dryad.826kd/1
title: Taxonomic assignments for all reads reported in figure 2

description: This excel file contains the meta data for all sequenced reads with their taxonomic assignment reported in figure 2 as well as the file used to construct table 1.  Worksheet titled, “all_data_confirmed_taxonomy” contains all reads by site that were confirmed to at least the family level as described in the manuscript.  The full taxonomic name associated with the reference sequence is listed, but this is not to be interpreted as the assignment for the read below the family level in all cases.  See Supplementary Data 1, 2, 3 and 4 in manuscript for which families and species were considered confirmed as described in the methods section.  Worksheet titled, “Pivot_all_confirmed_Table 1” contains a PIVOT table whereby we calculated the values reported in Table 1 columns 8, 9 and 10.
DOI: 10.5061/dryad.82fq5/1
title: Stream macroinvertebrates of Parque Estadual Intervales, Brazil
DOI: 10.5061/dryad.989r4/1
title: Data for frogs
DOI: 10.5061/dryad.989r4/2
title: Data for fungal cultures
DOI: 10.5061/dryad.gv3vg/1
title: MCC_TBAH_Data

description: Turbidity, SAXS and WAXS data on microcrystalline cellulose (MCC) in aqueous solutions of tetrabutylammonium hydroxide (TBAH) in various concentrations.
DOI: 10.5061/dryad.h58qc/4
title: Marine Arctic food-web

description: Sample food web for the NOS software suite. Data from: Kortsch, S. et al. 2015. Climate change alters the structure of arctic marine food webs due to poleward shifts of boreal generalists. Proc. R. Soc. B 282: 20151546.
DOI: 10.5061/dryad.h58qc/5
title: Marine Boreal food-web

description: Sample food web for the NOS software suite. Data from: Kortsch, S. et al. 2015. Climate change alters the structure of arctic marine food webs due to poleward shifts of boreal generalists. Proc. R. Soc. B 282: 20151546.
DOI: 10.5061/dryad.j931d/1
title: red-bellied and downy woodpecker playback response
DOI: 10.5061/dryad.j931d/2
title: downy behavioral response data
DOI: 10.5061/dryad.j931d/3
title: dw drum responses
DOI: 10.5061/dryad.jt644/11
title: Combined21pop_variants.tar.gz

description: Genetic variants called for the combined set of 21 Timema cristinae populations using Samtools and Bcftools. Uncompressed file sizes: 4.3G and 0.7G
DOI: 10.5061/dryad.jt644/14
title: Timema5species_variants.gz

description: Genetic variants called for five related Timema species using Samtools and Bcftools. Uncompressed file size: 258M
DOI: 10.5061/dryad.jt644/16
title: Input_N1.tar.gz

description: Input files for various analyses for population N1 of Timema cristinae
DOI: 10.5061/dryad.jt644/17
title: Input_FHA.tar.gz

description: Input files for various analyses for population FHA of Timema cristinae
DOI: 10.5061/dryad.jt644/18
title: Input_Combined21pop.tar.gz

description: Input files for various analyses for the combined set of 21 Timema cristinae populations
DOI: 10.5061/dryad.jt644/19
title: Gemma.tar.gz

description: Input files for running GEMMA software for population FHA of Timema cristinae
DOI: 10.5061/dryad.jt644/20
title: beast_div_times.tar.gz

description: Files and scripts for conducting BEAST 2 phylogenetic analyses for estimating divergence times between chromosomal variants
DOI: 10.5061/dryad.k0gq6/19
title: E_common_carpinteranum_68.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/20
title: E_common_cernuum_370.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/21
title: E_common_crassinervium_64.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/22
title: E_common_crassinervium_88.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/23
title: E_common_crassinervium_407.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/24
title: E_common_epigynium_76.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/25
title: E_common_hieronymi_398.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.k0gq6/26
title: E_common_hieronymi_402.fastq

description: Individual fastq file from the genotyping by sequencing dataset.
DOI: 10.5061/dryad.p039j/1
title: Agrochemical

description: Agrochemicals found in different colony sample types, location, and time points.
DOI: 10.5061/dryad.p039j/2
title: Pollen analysis of NNI positive samples

description: The relative proportion of pollen grains from different plants found in samples that tested positive for neonicotinoids
DOI: 10.5061/dryad.qb799/1
title: BPtree.MCC

description: Fossil calibrated Maximum Clade Credibility (MCC) tree for pythons, boas and other henophidians, based on the alignment by Reynolds et al. 2014.
DOI: 10.5061/dryad.qb799/2
title: Python_Body_Measurements

description: Raw body measurements for the python specimens used in the study
DOI: 10.5061/dryad.qb799/3
title: Python_Data

description: Data on ecology, age and sex for the python specimens used in the study
DOI: 10.5061/dryad.r0881/1
title: Davies et al. Supplementary material

description: Supplementary material - 7 supplementary tables, and 1 supplementary figure. Includes table of all genus level taxa and their CCM values, as well as extended species and genus level results
DOI: 10.5061/dryad.r0mg6/1
title: Levis et al. data
DOI: 10.5061/dryad.s2v81.1/16.1
title: MERRAclim. 5m_min_00s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 2000s decade at 5 arcminutes resolution in GEOtiff format. The humidity version used is the min. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers(BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.1/17.1
title: MERRAclim. 5m_min_90s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1990s decade at 5 arcminutes resolution in GEOtiff format. The humidity version used is the min. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.1/18.1
title: MERRAclim. 5m_min_80s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1980s decade at 5 arcminutes resolution in GEOtiff format. The humidity version used is the min. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.1/19.1
title: MERRAclim. 2_5m_max_00s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 2000s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the max. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.1/20.1
title: MERRAclim. 2_5m_max_90s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1990s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the max. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.1/21.1
title: MERRAclim. 2_5m_max_80s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1980s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the max. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.1/22.1
title: MERRAclim. 2_5m_mean_00s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 2000s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the mean. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81.1/23.1
title: MERRAclim. 2_5m_mean_90s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1990s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the mean. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81/16
title: MERRAclim. 5m_min_00s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 2000s decade at 5 arcminutes resolution in GEOtiff format. The humidity version used is the min. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers(BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81/17
title: MERRAclim. 5m_min_90s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1990s decade at 5 arcminutes resolution in GEOtiff format. The humidity version used is the min. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81/18
title: MERRAclim. 5m_min_80s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1980s decade at 5 arcminutes resolution in GEOtiff format. The humidity version used is the min. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81/19
title: MERRAclim. 2_5m_max_00s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 2000s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the max. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81/20
title: MERRAclim. 2_5m_max_90s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1990s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the max. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81/21
title: MERRAclim. 2_5m_max_80s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1980s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the max. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81/22
title: MERRAclim. 2_5m_mean_00s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 2000s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the mean. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81/23
title: MERRAclim. 2_5m_mean_90s

description: MERRAclim Dataset. 19 global bioclimatic variables from the 1990s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the mean. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.s2v81/24
title: MERRAclim. 2_5m_mean_80s

description: MERRAclim Dataset. 19 global bioclimatic variables from the1980s decade at 2.5 arcminutes resolution in GEOtiff format. The humidity version used is the mean. The variables have been built using the same protocol as WorldClim with data from MERRA. Temperature layers (BIO1-BIO11) are in degree Celsius multiplied by 10, humidity layers (BIO12-BIO19) are in kg of water/kg of air multiplied by 100000.
DOI: 10.5061/dryad.18q5n/1
title: Soil surface CO2 flux data

description: Comma-separated text table containing daily averages of barometrically corrected water table height and soil surface CO2 flux, as described in the "Soil respiration" section of the SI Methods.  These data appear in Figure 4b of the paper.
DOI: 10.5061/dryad.18q5n/2
title: Radiocarbon dates from peat samples

description: Comma-separated text table containing calibrated radiocarbon dates from peat samples, shown in Figure 7 of the paper.  Of the data in the table, 22 the dates from 7 cores first appeared in Gandois et al. (2014), and 7 dates from 1 core first appeared in Dommain et al. (2015), in addition to the 6 dates from 1 core first appearing here, as noted in the "Source" column of the table.
DOI: 10.5061/dryad.2t6t8/1
title: Cy_FASTQ

description: FASTq sequences of 38 individuals used, with their corresponding barcode from the sequencing. See file "Cy_GENERAL-DATA-ID-GEO-CATALOG.txt" to know the general information of the samples.
DOI: 10.5061/dryad.2t6t8/2
title: Cy_GENERAL-DATA-ID-GEO-CATALOG

description: General information of the 38 samples: catalog-voucher from the National Ornithology Collection (UNAM, Mexico), sample ID (barcodes from the sequencing) geographic position (longitude and latitude), the corresponding operative-geogaraphic-unit (OGU), vegetation type and number of the sampling point (see Figure 1 in the article).
DOI: 10.5061/dryad.2t6t8/3
title: Cy_Bioclim-Morpho

description: Bioclimatic and morphometric data of the 38 samples. In table are the Sample-ID/sequencing barcode, the corresponding operative-geographic-unit, six morphometric measures (WIL, TAL, TRL, CUL, BIW, BID) and all the 19 bioclimatic data obtained from WorldClim databases.
DOI: 10.5061/dryad.2t6t8/4
title: Cy_Gsnap-alignment

description: Sam files of the 38 individuals with two types of alignment to a Pseudo-Reference-Genome (PRG), to the American Crow (Cy_AmericanCrow) and the Zebra Finch (Cy_ZebraFinch), performed with Gsnap and after all filters (clone filter, optical duplicates and mapping quality).
DOI: 10.5061/dryad.2t6t8/5
title: Cy_STACKS_output

description: STACKS output from the correction module (rx_stacks) of ref_map (two PRG: PRG_AmericanCrow and PRG_ZebraFinch) and de_novo (run 1 and run 2 separate: Denovo_R1 and Denovo_R2) pipelines and populations maps used (Cy_2POP.txt and Cy_3POP.txt). Included are the catalog.tags, de-novo assemblies and output of the populations module. Each directory includes summary statistics per locus and overall, and all SNP data in STRUCTURE, FASTA, Genpop, PLINK and VCF format.
DOI: 10.5061/dryad.43f8k/1
title: Bumble bee morphology and flight buzz frequency - alpine species

description: Morphological measurements (tongue length, wing length, intertegular distance) and flight buzz frequency for two alpine bumble bee species (Bombus balteatus and B. sylvicola) as collected by Nicole Miller-Struttmann and colleagues in 2014 at Niwot Ridge Long Term Ecological Research Site in Colorado.

COLUMN DETAILS:
BeeNumber - a unique identifier given to each individual collected
Species - bumble bee species
Caste - bumble bee caste
BuzzNumber - the buzz replicate (1 through 3) for each individual
FlightBuzzFrequency - the characteristic frequency of the buzz in mm
TongueLength - tongue length in mm
WingLength - wing length in mm
IntertegularDistance - the distance between the bases of the wings in mm
DOI: 10.5061/dryad.43f8k/2
title: Bumble bee morphology and flight buzz frequency - literature survey

description: Tongue length (mm) and flight buzz frequency (Hz) for queens and workers of 17 bumble bee species as reported in the literature.
DOI: 10.5061/dryad.43f8k/3
title: Automated versus manual bumble bee flight buzz counts

description: Buzz counts quantified by manual (auditory and visual) counts and automated counts produced by the algorithm (modified Computational Auditory Scene Analysis with focal templates) composed by David Heise with data collected in 2015 at Pennsylvania Mountain in Colorado.
DOI: 10.5061/dryad.43f8k/4
title: Bee density, buzz density, and pollination services

description: Bumble bee density, flight buzz density (Hz) and pollination services (seed set) as collected by Galen and colleagues in 2015 at Pennsylvania Mountain in Colorado. 

COLUMN DETAILS:
Site - the location on Pennsylvania Mountain 
PlantSpecies - the genus and species name of the focal plant
BuzzesPerHour - the number of buzzes recorded per hour via acoustic monitoring
BeesPerHour - the number of bees recorded per hour via visual surveys
ControlSeedSet - seed set of individuals left open to pollinators
ExcludedSeedSet - seed set of individuals covered in mesh netting to exclude bumble bee pollinators.
DOI: 10.5061/dryad.4f7qg/1
title: Full_Data

description: This file contains all the data underlying the results presented in our study (set apart genomic data which were deposited on NCBI), namely: Phenotyping data from field sampled mosquitoes, ace-1 CNV, AChE1 activity measures, Life history trait measures of various mosquito strains and experimental evolution data.
DOI: 10.5061/dryad.4f7qg/2
title: Insert sizes

description: Insert sizes distribution for Kisumu, Acerkis and AcerDuplikis strains
DOI: 10.5061/dryad.50t9d/3
title: Biomass of Betula glandulosa leaves after 5 years of simulated warming and browsing

description: Data used for to fit linear mixed-effect models (package lme4, R v. 3.2.3) to assess the effect of nitrogen addition, warmer 
temperatures and browsing intensity on Betula glandulosa leaves biomass (Table 2)
DOI: 10.5061/dryad.51d4h/2
title: Data from: Stacked Bt maize and arthropod predators: exposure to insecticidal Cry proteins and potential hazards

description: Weight, development, and survival data for Phylloneta impressa juvenile spiders, Chrysoperla carnea lacewing larvae, and Harmonia axyridis ladybeetle larvae fed with pollen, aphids Rhopalosiphum padi, or spider mites Tetranychus urticae from SmartStax Bt maize or genetically closest non-Bt hybrid. ELISA Cry protein measurements of the previously described predators as well as of food items and maize leaves.
DOI: 10.5061/dryad.54n60/1
title: original data children

description: Results of questionnaires from the children
DOI: 10.5061/dryad.54n60/2
title: original data parents

description: Results of questionnaires from parents
DOI: 10.5061/dryad.5bd62/11
title: processed_reads5

description: File 5/13 containing processed reads after running process radtags. Contains separate .fq files for each sample.
DOI: 10.5061/dryad.5bd62/13
title: processed_reads6

description: File 6/13 containing processed reads after running process radtags. Contains separate .fq files for each sample.