cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21331059.v3
title: Comparative Analysis of the Complete Chloroplast Genomes of Six Berberis Species and Development of Specific DNA Barcode and its Application in Chinese Medicinal Material Berberidis Radix

description: Chloroplast genomes have been widely considered as a valuable resource for phylogenetic reconstruction and molecular marker development in plant species. In this study, for the first time, we systematically compared the complete chloroplast genome sequences of the six <em>Berberis</em> species (<em>B. julianae</em>, <em>B. tsienii</em>, <em>B. pruinose</em>, <em>B. thunbergii</em>, <em>B. poiretii</em> and <em>B. wilsoniae</em>), which commonly were used as medicinal herb Berberidis Radix. The <em>ndhD-ccsA</em> as highly divergent region was found and taken as a potential marker for species identification. Combined with DNA metabarcoding technology, the barcode was applied to the Chinese patent medicine containing Berberidis Radix (Sankezhen). The results showed that the six complete chloroplast genomes exhibited a typical quadripartite structure which ranging from 165,934 to 168,828 bp in length. A total of 147 unique genes were identified in each chloroplast genome, comprising 101 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Comparative genome analysis demonstrated that the six chloroplast genomes were highly conserved in genome size, GC contents, and gene organization. The phylogenetic relationships of six <em>Berberis</em> plants were revealed and the results showed that <em>Mahonia</em> was supported as separate clade in the <em>Berberis</em> genera tree, which was coincident with previous studies. The nucleotide diversity analysis revealed seven variable loci in protein coding regions, and four variable loci in gene spacer regions, respectively. The primer pair 1508F-1864R on <em>ndhD-ccsA </em>region was proven to precisely discriminate the six studied <em>Berberis</em> species and recovered the biodiversity of <em>Berberis</em> species in Chinese patent medicines. In general, this study provides meaningful genetic information for <em>Berberis</em> plants, and establishes a method to realize the identification of Berberidis Radix as multi-origin Chinese medicinal materials, which can be applied to Chinese patent medicines containing Berberidis Radix.
DOI: 10.5066/p9rebw60
title: Ground motions from the 2019 Ridgecrest, California, earthquake sequence

description: This project involves the compilation of ground motions, their derived parameters, and metadata for 133 earthquakes in the 2019 Ridgecrest, California, earthquake sequence. This dataset includes 22,991 records from 133 events from 4 July 2019 to 18 October 2019 with a magnitude range from 3.6 to 7.1.
DOI: 10.5281/zenodo.3533792
title: GLM2_modified and Results as used in Ma et al: Global rules for translating land-use change (LUH2) to land-cover change for CMIP6 using GLM2, Geosci. Model Dev., 2020

description: Code modified GLM2, scripts and result as used in Ma et al 2019, Ma et al 2019, Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2019-146
description: {"references": ["Ma et al 2019, Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2019-146"]}
DOI: 10.6084/m9.figshare.20409858.v2
title: Altered basal ganglia output during self-restraint

description: This is the data that was used for a paper titled 'Altered basal ganglia output during self-restraint.' Format and organization is written in the ReadMe.txt file. Files will be continued to be uploaded until 10/30/22.
DOI: 10.17632/39b888h242.1
title: Supporting data for ‘The influence of bare ground thermal roughness parameterization on the simulation of near-surface air and skin temperatures over the Tibetan Plateau’ submitted to JGR-Atmosphere

description: This is the supporting data for the manuscript entitled ‘The influence of bare ground thermal roughness parameterization on the simulation of near-surface air and skin temperatures over the Tibetan Plateau’ submitted to JGR-Atmosphere. There are mainly two types of data, 1) station observation data, 2) simulation data. More detailed introductions can be found in the manuscript.
DOI: 10.5066/p9n8uq43
title: Preliminary data from animal borne cameras on loggerhead sea turtles in St. Joseph Bay, Florida (2018-2019)

description: This is a fifty-four second video which includes short segments compiled from video collected using GoPro cameras mounted on two individual loggerhead turtles (Caretta caretta) within St. Joseph Bay, Florida as part of a preliminary data release for U.S. Geological Survey (USGS) outreach publications. Approximately 90 minutes of video footage was collected per individual prior to retrieval. This is a continuing effort to document the interactions, movement, and feeding ecology of loggerhead turtles for future scientific publications.
DOI: 10.14459/2021mp1611393
title: Experimental investigation of the influence of electric contact resistance of lithium-ion battery testing for fast-charge applications

description: This data repository contains measurement data of different contacting techniques for lithium-ion battery lab testing. Electrical contact resistances (ECRs) are measured and provided alongside with lithium-ion battery test data for a high and low ECR compared to a laser-welded lithium-ion battery. The data can be used to evaluate the transferability of lab-level statements to automotive applications, if high charging currents are applied.
DOI: 10.25545/zxdjz7
title: Alpha Particle X-ray spectrometer geochemistry of the Murray formation and Vera Rubin ridge, Gale crater, Mars

description: Geochemical data used in the paper; APXS-derived compositional characteristics of Vera Rubin Ridge and Murray formation, Gale crater, Mars: Geochemical implications for the origin of the ridge.
DOI: 10.5066/f7fq9tr3
title: Waterfalls linked to the National Hydrography Dataset

description: This dataset contains information about waterfall location and characteristics. It also provides a linear reference to two National Hydrography Datasets. This dataset is based off the World Waterfall Database (WWD) and other source datasets. The coordinates and spatial attributes from the WWD were used to help verify locations in Google Earth. From there, the USGS HydroLink Tool was used to link data to both the NHDPlusV2.1 (1:100,000 scale) and NHD High Resolution Dataset (1:24,000 scale). This dataset currently includes waterfalls from the states of Indiana, Wisconsin, Michigan, Nebraska, Illinois and Missouri. Waterfalls from other states are planned to be added through time, see the status and update sections of the metadata for additional information.
DOI: 10.6084/m9.figshare.20292303
title: Supplementary Material for: Catheter ablation for atrial fibrillation in patients with chronic kidney disease and on dialysis – a meta-analysis and review

description: Background: Atrial fibrillation (AF) is common in chronic kidney disease (CKD) patients and is difficult to treat with antiarrhythmics and anticoagulants due to abnormal metabolism and increased side effects. Catheter ablation, if successful, may be a safer alternative. This review aims to analyse the effect of CKD or haemodialysis (HD) on recurrence of AF after catheter ablation . This review evaluates efficacy of catheter ablation therapy in CKD and haemodialysis (HD) patients by with single catheter ablation therapy. Methods: MEDLINE, and Embase, and Pubmed databases were searched until December 2020. Two authors abstracted the data independently. Relative risks were derived using random-effects meta-analysis. Results: Of the initially identified 520 782 studies, 65 and 34 observational studies on CKD and HD patients respectively were found reporting AF recurrence rates. During a mean (SD) follow-up of 25.5 (9.8) months, CKD patients have a higher risk of AF recurrence compared to patients without CKD (RR 2.34, 95% CI 1.36-4.02, p&lt;0.01). The heterogenicity test showed there were significant differences between individual studies (I2 = 91.0%, 95% CI 82.2%-95.6%). In a mean (SD) follow-up of 40.332.6 (20.826.8) months, HD patients may be at a higher risk of AF recurrence compared to healthy non-dialysis AF patients (RR 1.501.21, 95% CI 0.64-2.300.84-2.67, p=0.170.55). Heterogeneity analysis showed the studies were heterogeneous (I2 90.1�.3%, 95% CI 77.5%-95.6�.8%-96.9%, p &lt;0.01). Conclusion: Our meta-analysis suggests patients with CKD and on HD are more likely to have AF recurrences compared to AF patients who do not have CKD. However, more robust evidence from randomiszed controlled trials comparing catheter ablation and pharmaceutical rhythm therapy is urgently needed to guide therapy in this difficult to treat population.
DOI: 10.6084/m9.figshare.20711101
title: Datasets for "Partitioning of sensible and latent heat fluxes in different vegetation types and their spatiotemporal variations based on 203 FLUXNET sites"

description: This repository is for the datasets and codes for "Partitioning of sensible and latent heat fluxes in different vegetation types and their spatiotemporal variations based on 203 FLUXNET sites". This dataset provides processed FLUXNET data and CLM5.0 simulation results, including sensible heat, latent heat, Bowen ratio, precipitation, temperature, albedo, shortwave radiation, longwave radiation, etc. In all zip files, <em><strong>code.rar</strong></em> provides codes for processing all data and drawing pictures, <em><strong>furgre.rar </strong></em>contains all the figures that appear in the manuscript, <em><strong>peocessed_data.rar </strong></em>provides processed FLUXNET data, including the multi-year annual mean variables in 203 FLUXNET sites, multi-year mean monthly values in 12 vegetation types from 203 FLUXNET sites, variables extracted from the CLM 5.0, etc. <em><strong>CLM_to_2d_12time.nc</strong></em> is listed separately, which provides multi-year (2006-2015) monthly average data of sensible heat, latent heat, and Bowen ratio for 17 pfts with resolution of 0.5°× 0.5° from CLM 5.0. At present, this article has been submitted to JGR for review.
DOI: 10.25318/2710027301-eng
title: Gross domestic expenditures on research and development, by science type and by funder and performer sector

description: Gross domestic expenditures on research and development, by funder, performer, science type and prices for provinces, territories and selected regions from 1963 to today.
DOI: 10.25545/fxzoz0
title: Alpha Particle X-ray spectrometer geochemistry of rocks associated with the Basal Siccar Point group unconformity, Glen Torridon region, Gale crater, Mars

description: Geochemical data used in the paper; Alteration at the base of the Siccar Point unconformity and further evidence for an alkaline provenance at Gale crater: Exploration of the Mount Sharp group, Greenheugh pediment cap rock contact with APXS
DOI: 10.48329/7308-xf35
title: CPRD GOLD June 2021

description: The CPRD GOLD database contains longitudinal routinely-collected electronic health records (EHR data) from UK primary care practices using Vision® general practice patient management software. The database captures information on demographic characteristics; diagnoses and symptoms; drug exposures; vaccination history; laboratory tests; and referrals to hospital and specialist care. Access to anonymised data from CPRD is subject to a full licence agreement containing detailed terms and conditions of use. Anonymised patient datasets can be extracted for researchers against specific study specifications, following protocol approval. Further information is available at https://www.cprd.com/data-access.
DOI: 10.5281/zenodo.3976342
title: Local and landscape environmental variables from 86 Neotropical streams, Upper Paraná River basin, Brazil

description: The dataset comprise environmental characterization for 86 streams in the Turvo-Grande and São José dos Dourados basins, Upper Paraná River basin, northwestern of São Paulo State, Brazil. We selected those streams considering the environmental gradient in the region (i.e., pasture-sugarcane transition). In each stream we quantified 31 local descriptors related with marginal vegetation (e.g., marginal grasses, roots, shrubs), water properties (e.g., water temperature, pH), instream structures (e.g., litter, wood debris), stream channel morphology (e.g., width, depth, flow), habitat composition and heterogeneity (e.g., mesohabitat, substrate composition). In addition, for each stream catchment (i.e., catchment area delimited upstream from the sampled stream reach), we measured 30 descriptors related with land-use composition and heterogeneity quantified through (i) the number of the land-use classes (i.e., richness), (ii) diversity of land-use classes (i.e., Shannon index), and (iii) the relative proportion of each land-use class. For a detailed description of how variables were obtained see Molina et al. (2017); Roa-Fuentes & Casatti (2017); Roa-Fuentes et al. (2019, 2020). A data matrix is provided in txt extension and a script with exploratory data analysis in R software (R Development Core Team 2020). <strong>References</strong> <em>- Molina, M. C., C.A. Roa-Fuentes, J.O. Zeni & L. Casatti, 2017. The effects of land use at different spatial scales on instream features in agricultural streams. Limnologica 65: 14–21. </em> <em>- R Development Core Team, 2020. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL http://www.R-project.org/</em> <em>- Roa-Fuentes, C. A. & L. Casatti, 2017. Influence of environmental features at multiple scales and spatial structure on stream fish communities in a tropical agricultural region. Journal of Freshwater Ecology 32: 281–295.</em> <em>- Roa-Fuentes, C. A., J. Heino, M. V. Cianciaruso, S. Ferraz, J. O. Zeni & L. Casatti, 2019. Taxonomic, phylogenetic and functional β-diversity patterns of stream fish in tropical agroecosystems. Freshwater Biology 64: 447–460. </em> - <em> Roa-Fuentes, C.A., Heino, J., Zeni, J.O. et al. Importance of local and landscape variables on multiple facets of stream fish biodiversity in a Neotropical agroecosystem. Hydrobiologia (2020). https://doi.org/10.1007/s10750-020-04396-7 </em>
DOI: 10.5281/zenodo.6327112
title: Peat macropore networks – new insights into episodic and hotspot methane emission

description: The data and scripts are related to the manuscript "Peat macropore networks – new insights into episodic and hotspot methane emission" by Petri Kiuru, Marjo Palviainen, Tiia Grönholm, Maarit Raivonen, Lukas Kohl, Vincent Gauci, Iñaki Urzainki, and Annamari (Ari) Laurén submitted to Biogeosciences.
DOI: 10.5281/zenodo.6974153
title: Supplementary Material for the paper "Editing Support for Software Languages: Implementation Practices in Language Server Protocols"

description: Supplementary material for the paper "Djonathan Barros; Sven Peldszus; Wesley K. G. Assunção; and Thorsten Berger. Editing Support for Software Languages: Implementation Practices in Language Server Protocols. In: 25th International Conference on Model Driven Engineering Languages and Systems (MODELS). 2022. ACM/IEEE."
DOI: 10.5281/zenodo.7193268
title: Pore network modeling as a new tool for determining gas diffusivity in peat

description: The data and scripts are related to the manuscript “Pore network modeling as a new tool for determining gas diffusivity in peat” by Petri Kiuru, Marjo Palviainen, Arianna Marchionne, Tiia Grönholm, Maarit Raivonen, Lukas Kohl, and Annamari (Ari) Laurén submitted to Biogeosciences. The folder structure is similar to the one in the package “Peat macropore networks – new insights into episodic and hotspot methane emission” https://doi.org/10.5281/zenodo.6327112, and the remaining required data files can be found there.
DOI: 10.6073/pasta/37d9c451a908e4a6f8e7ab914b93f44f
title: MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Benthic Algae and Other Community Components, ongoing since 2005

description: Coral reefs are comprised of scleractinian corals and many other benthic organims. The sampling described here quantifies the relative abundances of corals (aggregate abundance) and the other major benthic components including algal turfs, macroalgae, crustose corallines, and other sessile invertebrates. Abundance is estimated yearly at each of 6 sites (2 per shore) around the island. At each site, and in each of 4 habitats (fringing reef, backreef, forereef 10-m depth, forereef 17-m depth), 5 permanent 10-m long transects have been established and abundance estimates are made at fixed positions along each transect (n=10, 0.25 m2 quadrats per transect) allowing a repeated measures statistical analysis for the detection of temporal trends. This material is based upon work supported by the U.S. National Science Foundation under Grant No. OCE 16-37396 (and earlier awards) as well as a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2018). This work represents a contribution of the Moorea Coral Reef (MCR) LTER Site.
DOI: 10.1285/i15900932v39n2p13
title: Evolutoids and pedaloids of plane curves

description: Evolutes and pedals of plane curves have been well investigated since the beginning of the history of differential geometry. However, there might be no direct relationships between the pedal and the evolute of a curve. We introduce families of relatives of pedals and evolutes and investigate some relationships between these families curves. Moreover, we generalize these notions to the category of frontal curves. Then the relation can be completely described in this category.
DOI: 10.13020/d6g68v
title: Access Across America: Transit 2017 Data

description: These data were created as part of a study that examined the accessibility to jobs by transit in 49 of the 50 largest (by population) metropolitan areas in the United States. It is the most detailed evaluation to date of access to jobs by transit, and it allows for a direct comparison of the transit accessibility performance of America's largest metropolitan areas. These data are part of a longitudinal study. Access Across America: Transit 2016 data are available at https://conservancy.umn.edu/handle/11299/195065. Access Across America: Transit 2015 data are available at https://conservancy.umn.edu/handle/11299/183801. Access Across America: Transit 2014 data are available at http://hdl.handle.net/11299/168064.
description: Downloads are available for individual metropolitan regions, as well as states, in CSV or Shapefile format. Combined ZIP files containing the data for all metropolitan regions are also available in CSV and Shapefile format, and are labeled as "All Metropolitan Regions." A combined ZIP file containing the data for all State regions is available only in CSV format.
DOI: 10.14278/rodare.1879
title: Data publication: Finite-element dynamic-matrix approach for propagating spin waves: Extension to mono- and multilayers of arbitrary spacing and thickness

description: This dataset contains the numerically calculated data for our publication "Finite-element dynamic-matrix approach for propagating spin waves: Extension to mono- and multilayers of arbitrary spacing and thickness" published in AIP Advances. The data is structured as folders associated with each Figure showing any data. For cases in which different methods are compared, the data is separated into additional subfolders associated with each method (same naming scheme as in manuscript).
DOI: 10.18462/iir.tptpr.2017.0126
title: Experimental study of liquid phase heat capacity of dimethyl ether and triethylene glycol solution.

description: New experimental data for the isochoric heat capacity for pure DME (dimethyl ether), pure TEG (triethylene glycol) and DME/TEG solutions have been reported in the paper. We also present the description of the experimental setup that realizes method of direct heating in adiabatic calorimeter. The calorimeter has been used for experimental investigation of the two-phase isochoric heat capacity for pure DME, TEG as well as DME/TEG solution at weight fractions of DME 20.8%, 74.7% in temperature range from 152 to 324 К. The procedure of fitting for the obtained experimental data is reported. The analysis shows that mean uncertainty of measured data does not exceed 0.75%. The temperature and weight fraction dependence for the heat capacity of liquid phase for the mixture of dimethyl ether - triethylene glycol are described in the paper.
DOI: 10.25318/2710002601-eng
title: Federal expenditures on science and technology, by major departments and agencies - Intentions

description: Federal expenditures on science and technology, by expenditures, science and technology components and major departments and agencies for Canada from 2000 to today.
DOI: 10.5281/zenodo.6805594
title: TSG101 Associates with PARP1 and is Essential for PARylation and DNA Damage-induced NF-κB Activation

description: This dataset contains the raw luciferase assay data generated in the genome-wide siRNA screen.
DOI: 10.5285/bf150dd6-7b28-49ca-b66f-8b543a33a5c0
title: Cardiff Urban Geo-Observatory, Groundwater Temperature Data 2014-2018

description: Groundwater temperature data from a shallow urban aquifer in Cardiff, Wales, UK between 2014-2018. Monitoring was undertaken as part of the ‘Cardiff Urban Geo-Observatory’ project. Boreholes are located within the urban area of the City of Cardiff, Wales, UK. The majority of temperature sensors were installed within boreholes that monitor a shallow Quaternary aged sand and gravel aquifer, however the made ground and the Triassic Mercia Mudstone also represented. Temperature sensors installed in 53 boreholes, between depths of 1.5m and 12- m below ground, with measurements every 30 minutes. The dataset comprises of just over 3.5 million temperature measurements. Monitoring was undertaken by the British Geological Survey and was designed to address knowledge gaps of subsurface urban heat island and it use for heat recovery and storage. Spatial Ref Sys: OSGB 1936 / British National Grid [27700].
DOI: 10.25375/uct.21371169
title: Investigating red pigment production by Penicillium purpurogenum DSM 62866 - Thesis dataset

description: This is the dataset relevant to the PhD thesis titled "Investigating red pigment production by <em>Penicillium purpurogenum</em> DSM 62866." Red pigment production by this filamentous fungus was investigated using a range of cultivation conditions; medium compositions; and growth scales, including agar plate, multiwell plate, shake flask and benchtop bioreactor cultivation.
DOI: 10.25375/uct.21371169.v1
title: Investigating red pigment production by Penicillium purpurogenum DSM 62866 - Thesis dataset

description: This is the dataset relevant to the PhD thesis titled "Investigating red pigment production by <em>Penicillium purpurogenum</em> DSM 62866." Red pigment production by this filamentous fungus was investigated using a range of cultivation conditions; medium compositions; and growth scales, including agar plate, multiwell plate, shake flask and benchtop bioreactor cultivation.
DOI: 10.6084/m9.figshare.21485901
title: Interview guide.docx

description: Interview guide to ascertain the requirements from a health care provider's point of view.
DOI: 10.6084/m9.figshare.21485685
title: Data file 03-The ARRIVE guidelines 2.0- Author Checklist and flow chart of the study

description: Authors Check list as per The ARRIVE guidelines 2.0 <br> and <br> Flow chart or graphical abstract of the study
DOI: 10.6084/m9.figshare.21485685.v1
title: Data file 03-The ARRIVE guidelines 2.0- Author Checklist

description: Authors Check list as per The ARRIVE guidelines 2.0
DOI: 10.6084/m9.figshare.21485685.v2
title: Data file 03-The ARRIVE guidelines 2.0- Author Checklist and flow chart of the study

description: Authors Check list as per The ARRIVE guidelines 2.0 <br> and <br> Flow chart or graphical abstract of the study