cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10049249.v1
title: MOESM1 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 1: Table S1. Amino acid sequences of the HSF proteins from NODAI Radish genome database. Table S2. CDS sequences of the HSF genes from NODAI Radish genome database. Table S3. DNA sequences of the HSF genes from NODAI Radish genome database.
DOI: 10.5281/zenodo.10634632
title: The Dataset of the paper "Observations of the near-field Yellow River plume and fronts and their biogeochemical effects"

description: The data for "Observations of the near-field Yellow River plume and fronts and their biogeochemical effects". The file names correspond to the figures in the paper.
DOI: 10.5281/zenodo.10634633
title: The Dataset of the paper "Observations of the near-field Yellow River plume and fronts and their biogeochemical effects"

description: The data for "Observations of the near-field Yellow River plume and fronts and their biogeochemical effects". The file names correspond to the figures in the paper.
DOI: 10.6084/m9.figshare.10049261
title: MOESM1 of SWATH-MS-facilitated proteomic profiling of fruit skin between Fuji apple and a red skin bud sport mutant

description: Additional file 1: Table S1. Protein reports for the 1470 unique proteins quantified by SWATH-MS. (XLSX 538 kb)
DOI: 10.6084/m9.figshare.10049261.v1
title: MOESM1 of SWATH-MS-facilitated proteomic profiling of fruit skin between Fuji apple and a red skin bud sport mutant

description: Additional file 1: Table S1. Protein reports for the 1470 unique proteins quantified by SWATH-MS. (XLSX 538 kb)
DOI: 10.6084/m9.figshare.23957979
title: Living Shoreline Pilot Project Monitoring in the Great Bay Estuary, New Hampshire (Dataset)

description: <b>Dataset Description:</b>Repository data set for the in-review article of "Short-term recovery of Pilot Living Shoreline Projects for Salt Marsh Habitat in New Hampshire" in the <i>Journal Estuaries and Coasts</i> (https://doi.org/10.1007/s12237-023-01284-w). Monitoring was conducted by the Coastal Habitat Restoration Team at Jackson Estuarine Laboratory, University of New Hampshire. The dataset is broken down into:(1) Compiled dataset of all metrics monitored in the project. Detailed explanations and metadata on the monitoring, variables, and column headers are provided in the dataset(2) Individual CSV files, used in the R code analysis, separated by individual metrics of vegetation, and nekton, pore water chemistry.(3) R code analysis used to calculate statistics and figures for the publication. R code is well-annotated and provides step-by-step instructions and details. <br><b>Abstract:</b>Over the past six years, the New Hampshire (NH) Department of Environmental Services has shifted its preference for shoreline stabilization from traditional engineered shorelines (e.g., seawalls, concrete armoring) to nature-based living shoreline (LS) solutions. To improve the expectations and outcomes of future projects, we monitored three LS pilot projects in the Great Bay Estuary of NH from 2019 - 2022, estimated short-term recovery of the soil biogeochemistry, plant community, and habitat use by fauna, and documented adaptive management needs. Each LS was paired with a nearby (&lt; 200 m) reference salt marsh and a degraded shoreline. After four years, halophyte cover had recovered 25 – 75% in the low marsh and 26 – 70% in the high marsh. Creation of salt marsh habitat supported similar mummichog population abundances (10 – 24 indiv. per trap) similar to reference marshes and substantially greater than no action control shorelines (0 – 1 indiv. per trap). Aerobic or mildly anaerobic reduction-oxidation potentials in the low marsh (14 – 302 mV) and high marsh (243 – 266 V) were attributed to rapid drainage of the marsh in two of the LS projects. A novel planting technique of spreading a turf with pre-installed graminoid plugs across the marsh surface at one of the sites may have jumpstarted development of anerobic soil conditions within three years (Low: -192.7 + 14.9 mV, High: -119.0 + 25.3 mV). Opportunistic foraging waterfowl and burial by wrack led to annual replacement replanting and seasonal wrack removal as adaptive management needs of these and future projects. LS projects in the Great Bay Estuary provide functional salt marsh habitat and improved shoreline resilience that can serve as a valuable strategy for coastal restoration.<br><b>Contact Information:</b>All questions about the dataset can be directed to Grant McKown (james.mckown@unh.edu), Gregg Moore (gregg.moore@unh.edu), and David Burdick (david.burdick@unh.edu)
DOI: 10.6084/m9.figshare.23957979.v2
title: Living Shoreline Pilot Project Monitoring by the Coastal Habitat Restoration Team in the Great Bay Estuary, New Hampshire Montioring Dataset

description: Repository data set for the in-review article of "Short-term recovery of Pilot Living Shoreline Projects for Salt Marsh Habitat in New Hampshire" in the Journal Estuaries and Coasts. Over the past six years, the New Hampshire (NH) Department of Environmental Services has shifted its preference for shoreline stabilization from traditional engineered shorelines (e.g., seawalls, concrete armoring) to nature-based living shoreline (LS) solutions. To improve the expectations and outcomes of future projects, we monitored three LS pilot projects in the Great Bay Estuary of NH from 2019 - 2022, estimated short-term recovery of the soil biogeochemistry, plant community, and habitat use by fauna, and documented adaptive management needs. Each LS was paired with a nearby (&lt; 200 m) reference salt marsh and a degraded shoreline. After four years, halophyte cover had recovered 25 – 75% in the low marsh and 26 – 70% in the high marsh. Creation of salt marsh habitat supported similar mummichog population abundances (10 – 24 indiv. per trap) similar to reference marshes and substantially greater than no action control shorelines (0 – 1 indiv. per trap). Aerobic or mildly anaerobic reduction-oxidation potentials in the low marsh (14 – 302 mV) and high marsh (243 – 266 V) were attributed to rapid drainage of the marsh in two of the LS projects. A novel planting technique of spreading a turf with pre-installed graminoid plugs across the marsh surface at one of the sites may have jumpstarted development of anerobic soil conditions within three years (Low: -192.7 + 14.9 mV, High: -119.0 + 25.3 mV). Opportunistic foraging waterfowl and burial by wrack led to annual replacement replanting and seasonal wrack removal as adaptive management needs of these and future projects. LS projects in the Great Bay Estuary provide functional salt marsh habitat and improved shoreline resilience that can serve as a valuable strategy for coastal restoration.All questions about the dataset can be directed to Grant McKown (james.mckown@unh.edu), Gregg Moore (gregg.moore@unh.edu), and David Burdick (david.burdick@unh.edu)
DOI: 10.6084/m9.figshare.22625996
title: Additional file 3 of Golgi-apparatus genes related signature for predicting the progression-free interval of patients with papillary thyroid carcinoma

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.10049267
title: MOESM3 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 3: Table S4. Summary information of the RsHSF proteins.
DOI: 10.6084/m9.figshare.10049267.v1
title: MOESM3 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 3: Table S4. Summary information of the RsHSF proteins.
DOI: 10.6084/m9.figshare.10049270
title: MOESM2 of SWATH-MS-facilitated proteomic profiling of fruit skin between Fuji apple and a red skin bud sport mutant

description: Additional file 2: Table S2. List of differentially expressed proteins following classification analysis. Proteins with fold change &gt; 1.5 (Increased) or &lt; 0.67 (Decreased) are considered as DEPs (P value &lt; 0.05). (XLSX 125 kb)
DOI: 10.6084/m9.figshare.20004696
title: Additional file 2 of Age, sex, residence, and region-specific differences in prevalence and patterns of multimorbidity among older Chinese: evidence from Chinese Longitudinal Healthy Longevity Survey

description: Additional file 2: Table S1. Top ten frequent unique combination clusterswith multimorbidity, stratified by age. Table S2. Top ten frequentunique combination clusters with multimorbidity, stratified by sex. Table S3. Top ten frequent unique combination clusters with multimorbidity, stratified by residence. Table S4. Top ten frequent unique combination clusters with multimorbidity, stratified by region.
DOI: 10.6084/m9.figshare.22623040
title: Additional file 2 of Low-dose arecoline regulates distinct core signaling pathways in oral submucous fibrosis and oral squamous cell carcinoma

description: Additional file 2: Suppl. Table 2. Summary of DEGs in CAL27 samples with or without low-dose arecoline treatment.
DOI: 10.6084/m9.figshare.10049270.v1
title: MOESM2 of SWATH-MS-facilitated proteomic profiling of fruit skin between Fuji apple and a red skin bud sport mutant

description: Additional file 2: Table S2. List of differentially expressed proteins following classification analysis. Proteins with fold change &gt; 1.5 (Increased) or &lt; 0.67 (Decreased) are considered as DEPs (P value &lt; 0.05). (XLSX 125 kb)
DOI: 10.6084/m9.figshare.22623037.v1
title: Additional file 1 of Low-dose arecoline regulates distinct core signaling pathways in oral submucous fibrosis and oral squamous cell carcinoma

description: Additional file 1: Suppl. Table 1. Summary of DEGs in NFs samples with or without low-dose arecoline treatment.
DOI: 10.6084/m9.figshare.10049273
title: MOESM4 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 4: Table S5. HSFs in Arabidopsis, rice, and grape.
DOI: 10.6084/m9.figshare.22623046.v1
title: Additional file 4 of Low-dose arecoline regulates distinct core signaling pathways in oral submucous fibrosis and oral squamous cell carcinoma

description: Additional file 4: Suppl. Table 4. Summary of GO enrichment in NFs under low-dose arecoline treatment comparedwith control group.
DOI: 10.6084/m9.figshare.10049273.v1
title: MOESM4 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 4: Table S5. HSFs in Arabidopsis, rice, and grape.
DOI: 10.6084/m9.figshare.10049279
title: MOESM5 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 5: Table S6. Summary information of chromosomal location of RsHSFs in radish.
DOI: 10.6084/m9.figshare.10049279.v1
title: MOESM5 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 5: Table S6. Summary information of chromosomal location of RsHSFs in radish.
DOI: 10.6084/m9.figshare.22623055.v1
title: Additional file 7 of Low-dose arecoline regulates distinct core signaling pathways in oral submucous fibrosis and oral squamous cell carcinoma

description: Additional file 7: Suppl. Table 7. Summary of DMRs in CAL27 samples with or without low-dose arecoline treatment.
DOI: 10.6084/m9.figshare.22626037.v1
title: Additional file 4 of Student standardized patients versus occupational standardized patients for improving clinical competency among TCM medical students: a 3-year prospective randomized study

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.10049288
title: MOESM6 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 6: Table S7. The different origins of HSF genes in radish.
DOI: 10.6084/m9.figshare.22626046.v1
title: Additional file 7 of Student standardized patients versus occupational standardized patients for improving clinical competency among TCM medical students: a 3-year prospective randomized study

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.10049288.v1
title: MOESM6 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 6: Table S7. The different origins of HSF genes in radish.
DOI: 10.6084/m9.figshare.10049291
title: MOESM7 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 7: Table S8. Duplicated genes of HSF in radish.
DOI: 10.6084/m9.figshare.10049291.v1
title: MOESM7 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 7: Table S8. Duplicated genes of HSF in radish.
DOI: 10.6084/m9.figshare.10049294
title: MOESM8 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 8: Table S9. The orthologous and paralogous gene pairs of HSF proteins among the radish, Arabidopsis and rice.
DOI: 10.6084/m9.figshare.10049294.v1
title: MOESM8 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 8: Table S9. The orthologous and paralogous gene pairs of HSF proteins among the radish, Arabidopsis and rice.
DOI: 10.6084/m9.figshare.10049303
title: MOESM9 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 9: Table S10. Tissue-specific expression of radish HSF genes.
DOI: 10.6084/m9.figshare.10049303.v1
title: MOESM9 of Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

description: Additional file 9: Table S10. Tissue-specific expression of radish HSF genes.
DOI: 10.6084/m9.figshare.10049393
title: MOESM1 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 1: Table S1. List of miRNA SLRT-qPCR primers. The first column is the primer identifier and indicates the amplified miRNA (with the exception of the last primer which is the universal reverse primer). The second and third columns list the miRNA-specific forward primer sequence and the stem loop primer, respectively.
DOI: 10.6084/m9.figshare.10049393.v1
title: MOESM1 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 1: Table S1. List of miRNA SLRT-qPCR primers. The first column is the primer identifier and indicates the amplified miRNA (with the exception of the last primer which is the universal reverse primer). The second and third columns list the miRNA-specific forward primer sequence and the stem loop primer, respectively.
DOI: 10.6084/m9.figshare.10049402
title: MOESM2 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 2: Table S2. List of RT-qPCR primer sequences used to validate the relative abundances of miRNA-regulated gene transcripts measured by RNA-seq.
DOI: 10.6084/m9.figshare.10049402.v1
title: MOESM2 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 2: Table S2. List of RT-qPCR primer sequences used to validate the relative abundances of miRNA-regulated gene transcripts measured by RNA-seq.
DOI: 10.6084/m9.figshare.10049408
title: MOESM3 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 3: Table S3. Summary statistics of results of high-throughput sequencing of small RNA libraries.
DOI: 10.6084/m9.figshare.10049408.v1
title: MOESM3 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 3: Table S3. Summary statistics of results of high-throughput sequencing of small RNA libraries.
DOI: 10.6084/m9.figshare.10049414
title: MOESM4 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 4: Table S4. Counts of miRNAs detected in the primary root elongation zone under well-watered (WW), and mild and severe water deficit conditions. There are four biological replicates per water potential condition. miRNA abundances in each library are represented in RPTM (reads per ten million). Log fold-change calculations, p-values, and FDRs were generated with EdgeR. Significant tests (FDRâ &lt;â 0.05) are highlighted in bright yellow.
DOI: 10.6084/m9.figshare.10049414.v1
title: MOESM4 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 4: Table S4. Counts of miRNAs detected in the primary root elongation zone under well-watered (WW), and mild and severe water deficit conditions. There are four biological replicates per water potential condition. miRNA abundances in each library are represented in RPTM (reads per ten million). Log fold-change calculations, p-values, and FDRs were generated with EdgeR. Significant tests (FDRâ &lt;â 0.05) are highlighted in bright yellow.
DOI: 10.6084/m9.figshare.10049420
title: MOESM5 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 5: Table S5. microRNA sequence variants (isomiRs) detected by small RNA-seq. The reference miRNA sequences are highlighted in gray. In the isomiR sequences, green indicates that the nucleotide in the isomiR is the next consecutive nucleotide in the miRNA stem loop sequence but is not in the mature miRNA reference sequence in miRBase, blue indicates that a nucleotide in the mature reference miRNA was not in the isomiR sequence, and red indicates a polymorphism in the isomiR sequence relative to the miRBase miRNA sequence.
DOI: 10.6084/m9.figshare.10049420.v1
title: MOESM5 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 5: Table S5. microRNA sequence variants (isomiRs) detected by small RNA-seq. The reference miRNA sequences are highlighted in gray. In the isomiR sequences, green indicates that the nucleotide in the isomiR is the next consecutive nucleotide in the miRNA stem loop sequence but is not in the mature miRNA reference sequence in miRBase, blue indicates that a nucleotide in the mature reference miRNA was not in the isomiR sequence, and red indicates a polymorphism in the isomiR sequence relative to the miRBase miRNA sequence.
DOI: 10.6084/m9.figshare.10049429
title: MOESM6 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 6: Table S6. Summary statistics of results of high-throughput sequencing of degradome libraries.
DOI: 10.6084/m9.figshare.10049429.v1
title: MOESM6 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 6: Table S6. Summary statistics of results of high-throughput sequencing of degradome libraries.
DOI: 10.6084/m9.figshare.10049438
title: MOESM7 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 7: Table S7. List of miRNA-regulated gene transcripts detected in the primary root growth zone by degradome sequencing, and EdgeR-calculated fold-change value. The predicted miRNA-target transcript interactions that are conserved in other species are listed in red. The fold-change value of significantly differentially regulated transcripts (FDR &lt; 0.05) is highlighted with yellow. Transcripts that were not detected in the RNA-seq libraries are indicated with an #NA. Treatment Library—the library/libraries in which the target transcript was identified: WW, − 0.3, − 1.6 = A; WW, − 0.3 = B; WW, − 1.6 = C; − 0.3, − 1.6 = D; WW only = W; − 0.3 only = M; − 1.6 only = S; miRNA ID—the ID of the miRNA predicted to regulate the transcript; Transcript ID—the AGPv3 transcript identifier; − 0.3 MPa/26 h—abundance of the transcript in the mild water deficit treatment relative to its abundance in the well-watered treatment (log2FC); − 1.6 MPa/26 h—abundance of the transcript in the severe water deficit treatment relative to its abundance in the well-watered treatment (log2FC).
DOI: 10.6084/m9.figshare.10049438.v1
title: MOESM7 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 7: Table S7. List of miRNA-regulated gene transcripts detected in the primary root growth zone by degradome sequencing, and EdgeR-calculated fold-change value. The predicted miRNA-target transcript interactions that are conserved in other species are listed in red. The fold-change value of significantly differentially regulated transcripts (FDR &lt; 0.05) is highlighted with yellow. Transcripts that were not detected in the RNA-seq libraries are indicated with an #NA. Treatment Library—the library/libraries in which the target transcript was identified: WW, − 0.3, − 1.6 = A; WW, − 0.3 = B; WW, − 1.6 = C; − 0.3, − 1.6 = D; WW only = W; − 0.3 only = M; − 1.6 only = S; miRNA ID—the ID of the miRNA predicted to regulate the transcript; Transcript ID—the AGPv3 transcript identifier; − 0.3 MPa/26 h—abundance of the transcript in the mild water deficit treatment relative to its abundance in the well-watered treatment (log2FC); − 1.6 MPa/26 h—abundance of the transcript in the severe water deficit treatment relative to its abundance in the well-watered treatment (log2FC).
DOI: 10.6084/m9.figshare.10049444
title: MOESM8 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 8: Table S8. Abundance of selected miRNA-target mRNAs in the primary root elongation zone under well-watered (WW; − 0.02 MPa), and mild (MILD; − 0.3 MPa) and severe (MOD; − 1.6 MPa) water deficit conditions. There are three biological replicates per water potential condition. Transcript abundances in each library are represented in CPM (counts per million). Log fold-change calculations, p-values, and FDRs were generated with EdgeR
DOI: 10.6084/m9.figshare.10049444.v1
title: MOESM8 of Water-deficit responsive microRNAs in the primary root growth zone of maize

description: Additional file 8: Table S8. Abundance of selected miRNA-target mRNAs in the primary root elongation zone under well-watered (WW; − 0.02 MPa), and mild (MILD; − 0.3 MPa) and severe (MOD; − 1.6 MPa) water deficit conditions. There are three biological replicates per water potential condition. Transcript abundances in each library are represented in CPM (counts per million). Log fold-change calculations, p-values, and FDRs were generated with EdgeR