cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.78z3mj
title: Occurrence Download

description: A dataset containing 801 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carpodetus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 801 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011074-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17188433
title: Configuration files, sequence alignments and scripts associated with the IQTREE and MrBayes phylogenetic analyses with Eniochobothriidae (Eucestoda: Lecanicephalidea)

description: This dataset contains all input alignments, configuration files, scripts, and resulting trees used to perform the phylogenetic analyses described in the manuscript "A new species of Amiculucestus (Eucestoda: Lecanicephalidea: Eniochobothriidae) from the cownose ray, Rhinoptera bonasus (Myliobatiformes: Rhinopteridae) in the Western Atlantic". Analyses were conducted using IQ-TREE (Nguyen et al. 2015) for maximum-likelihood inference and MrBayes (Ronquist & Huelsenbeck 2003) for Bayesian inference.

 

.
DOI: 10.5281/zenodo.18364324
title: Configuration files, sequence alignments and scripts associated with the IQTREE and MrBayes phylogenetic analyses with Eniochobothriidae (Eucestoda: Lecanicephalidea)

description: This dataset contains all input alignments, configuration files, scripts, and resulting trees used to perform the phylogenetic analyses described in the manuscript "A new species of Amiculucestus (Eucestoda: Lecanicephalidea: Eniochobothriidae) from the cownose ray, Rhinoptera bonasus (Myliobatiformes: Rhinopteridae) in the Western Atlantic". Analyses were conducted using IQ-TREE (Nguyen et al. 2015) for maximum-likelihood inference and MrBayes (Ronquist & Huelsenbeck 2003) for Bayesian inference.

 

.
DOI: 10.5281/zenodo.18354539
title: FREEDA genome assemblies (NCBI GenBank) - Drosophila - Reference genome

description: DescriptionThis record provides a curated snapshot of public NCBI GenBank genome assembly FASTA files used as reference inputs for the FREEDA pipeline. Assemblies are redistributed unchanged for convenience and reproducibility.

Provenance and identifiers: Each genome is identified by its NCBI GenBank assembly accession and version as listed in FREEDA_genomes.xlsx, along with the corresponding NCBI Assembly URLs. Users should cite the original genome resources via their accessions and any associated primary publications.

Rights note: NCBI places no restrictions on the use or distribution of GenBank molecular data, but notes that some original submitters (or countries of origin) may assert patent/copyright/other IP claims in portions of submitted data; users are responsible for compliance where applicable.

Related work: This dataset supports the FREEDA pipeline described in: https://doi.org/10.1083/jcb.202212084 (added under “Related works”).
DOI: 10.5281/zenodo.18354538
title: FREEDA genome assemblies (NCBI GenBank) - Drosophila - Reference genome

description: DescriptionThis record provides a curated snapshot of public NCBI GenBank genome assembly FASTA files used as reference inputs for the FREEDA pipeline. Assemblies are redistributed unchanged for convenience and reproducibility.

Provenance and identifiers: Each genome is identified by its NCBI GenBank assembly accession and version as listed in FREEDA_genomes.xlsx, along with the corresponding NCBI Assembly URLs. Users should cite the original genome resources via their accessions and any associated primary publications.

Rights note: NCBI places no restrictions on the use or distribution of GenBank molecular data, but notes that some original submitters (or countries of origin) may assert patent/copyright/other IP claims in portions of submitted data; users are responsible for compliance where applicable.

Related work: This dataset supports the FREEDA pipeline described in: https://doi.org/10.1083/jcb.202212084 (added under “Related works”).
DOI: 10.5281/zenodo.18369016
title: METHODOLOGY OF USING PROVERBS, SAYINGS, AND RIDDLES IN THE MORAL AND SPIRITUAL EDUCATION OF PRIMARY SCHOOL PUPILS

description: This article comprehensively elucidates the pedagogical-methodological aspects of employing small genres of folk oral creativity—proverbs, sayings, and riddles—in the moral-spiritual education of primary school pupils. The role of these folklore elements in forming moral values, assimilating social behavioral norms, and developing logical thinking and creative abilities is analyzed. The article delineates methods for effectively integrating these genres into the instructional process, supplemented by practical examples and methodological recommendations. Research findings demonstrate that the judicious utilization of proverbs, sayings, and riddles not only renders the educational process interactive and engaging but also reinforces virtues such as responsibility, honesty, and industriousness in pupils.
DOI: 10.5281/zenodo.18369017
title: METHODOLOGY OF USING PROVERBS, SAYINGS, AND RIDDLES IN THE MORAL AND SPIRITUAL EDUCATION OF PRIMARY SCHOOL PUPILS

description: This article comprehensively elucidates the pedagogical-methodological aspects of employing small genres of folk oral creativity—proverbs, sayings, and riddles—in the moral-spiritual education of primary school pupils. The role of these folklore elements in forming moral values, assimilating social behavioral norms, and developing logical thinking and creative abilities is analyzed. The article delineates methods for effectively integrating these genres into the instructional process, supplemented by practical examples and methodological recommendations. Research findings demonstrate that the judicious utilization of proverbs, sayings, and riddles not only renders the educational process interactive and engaging but also reinforces virtues such as responsibility, honesty, and industriousness in pupils.
DOI: 10.15468/dl.strqsg
title: Occurrence Download

description: A dataset containing 1073 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insect (Coleoptera) Biodiversity Across Forest Canopy and Understorey in SE-Asia BIFA5_026"
 ]
}

 The dataset includes 1073 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011075-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kczdz
title: Occurrence Download

description: A dataset containing 266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuttsia viburnea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 266 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011076-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9rb3r
title: Occurrence Download

description: A dataset containing 175297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-112.84205 25.66115,-19.90419 25.66115,-20.23157 60.51056,-112.71373 60.75834,-112.84205 25.66115))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Clupea harengus",
 "Year 1970-2020"
 ]
}

 The dataset includes 175297 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011059-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7farb
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pulsatrix arredondoi"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011077-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngcb76
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Roussea simplex",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011078-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5rpuu
title: Occurrence Download

description: A dataset containing 40950 records in GBIF matching the query:
SELECT
 '407' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 37.42857426825602
 AND decimalLatitude &lt;= 41.89415215079384
 AND decimalLongitude &gt;= 23.025648717621866
 AND decimalLongitude &lt;= 29.97037376181266
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 40950 records were derived from 240 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011072-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7pnew
title: Occurrence Download

description: A dataset containing 476 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cephalorhynchus eutropia",
 "Year 2000-2026"
 ]
}

 The dataset includes 476 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011079-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/1hq8-4427
title: Data for Tucana Dwarf paper
DOI: 10.5061/dryad.8931zcrxp
title: Brain–muscle tissue communication prevents muscle aging by maintaining daily physiology

description: A network of molecular clocks is crucial for coordinating daily physiology
 and maintaining organismal health. However, the mechanisms underlying the
 interactions between these clocks and the significance of intra-tissue
 clock networks in muscle tissue maintenance have remained elusive. To
 uncover this network structure, we established a minimal clock module with
 the central clock (suprachiasmatic nucleus/brain) and/or a peripheral
 clock (muscle) in arrhythmic mice with premature aging. We find that
 reconstituting the brain-muscle clock network alone is sufficient to
 preserve fundamental daily homeostatic functions and prevent premature
 muscle aging. However, achieving whole muscle daily physiology requires
 the contribution of other peripheral clocks. Mechanistically, the muscle
 peripheral clock acts as a gatekeeper, selectively suppressing signals
 from the central clock that could be detrimental to muscle function if
 left uncontrolled while also integrating important muscle homeostatic
 functions. Our findings unveil the reciprocal interactions between central
 and peripheral clocks crucial for daily muscle function and highlight the
 significant influence of eating patterns on these interactions. These
 insights have implications for promoting healthier aging and reversing
 age-related muscle pathologies.
description: # Brain–muscle tissue communication prevents muscle aging by maintaining
 daily physiology
 [https://doi.org/10.5061/dryad.8931zcrxp](https://doi.org/10.5061/dryad.8931zcrxp) ## Data Each Excel file contains a sheet with a list of relevant variables and their definitions. ### Supplementary tables S1 to S4 legends: Table S1. Rhythmic transcriptome output by JTK_CYCLE in defined mice genotypes, with 12:12 hour light/dark (LD) cycles. Table S2. Rhythmic transcriptome output by RAIN in defined mice genotypes, with 12:12 hour LD cycles. Table S3. Differential rhythmicity analysis dryR in defined mice genotypes, with 12:12 hour LD cycles. Table S4. Transcription factor motif enrichment analysis using g:Profiler, with 12:12 hour LD cycles.
DOI: 10.7910/dvn/xqbpui
title: Replication Data for: Grassroots Economic Interdependence: Evidence from U.S.-China Higher Education Partnerships

description: These are the replication data required to reproduce the analyses and figures reported in the article “Grassroots Economic Interdependence: Evidence from U.S.–China Higher Education Partnerships”.
DOI: 10.5061/dryad.d7wm37q7c
title: Punctuated evolution of bill morphology in the largest family of songbirds (Thraupidae)

description: We assessed correlations between speciation rate and bill morphology
 (size, shape, and evolutionary rate) in an ecologically diverse and
 continental-scale songbird radiation, the tanagers (Thraupidae). Our
 analyses showed that bill size, shape, and their evolutionary rates are
 not correlated with speciation rate. However, we did find evidence that
 each axis of variation in bill morphology diversifies at speciation events
 interspersed with periods of gradual evolution, consistent with a
 punctuated equilibrium model of character change. To determine
 correlations, we incorporated a time-calibrated molecular phylogeny and
 high-resolution three-dimensional (3D) surface scans of bill structure
 from museum study skins. Overall, our findings suggest that bill size and
 shape diversify in association with the speciation process, but not
 through any effect on the rate of speciation. Previous studies have shown
 other traits, such as song, ecological niche, and plumage do influence
 speciation and, ultimately, species richness in tanagers.
description: # Punctuated evolution of bill morphology in the largest family of
 songbirds (Thraupidae)
 [https://doi.org/10.5061/dryad.d7wm37q7c](https://doi.org/10.5061/dryad.d7wm37q7c) ## Description of the data and file structure Landmark data based on high-resolution three-dimensional (3D) surface scans of tanager bills. The dataset consists of landmark and semi-landmark configurations of bill morphology from one adult male specimen per species, when available, from study skins at the Natural History Museum (NHM), Tring, UK. Landmarks are stored in a 3D array, where each markup corresponds to a separate element in the array, with rows representing 79 landmark positions and columns corresponding to xyz coordinates. The data is available as a .rds file (R data format). ## Sharing/Access information Data was derived from the following sources: Mark My Bird (markmybird.org)
DOI: 10.7910/dvn/wraerx
title: Replication Data for: Do Product Market Threats Discipline Corporate Misconduct?

description: This is the replication package for the JFQA paper titled “Do Product Market Threats Discipline Corporate Misconduct?” by Jie Chen, Xunhua Su, Xuan Tian, Bin Xu, and Xiaoyu Zhang.
DOI: 10.5061/dryad.d51c5b09n
title: Phylogeny and climate explain contrasting hydraulic traits in different life forms of 150 woody Fabaceae species

description: The contrasting hydraulic traits observed among different plant life forms
 are shaped by entangled environmental and evolutionary processes. However,
 we lack an understanding of the relative importance of life form, climate
 and phylogeny in explaining the variance of hydraulic traits. We analyzed
 seven hydraulic traits and eleven climatic variables of 150 Fabaceae
 species representing three life forms from 62 sites worldwide, using
 phylogenetic comparative analyses and variance partitioning. The
 phylogenetic signal found in most traits disappeared after considering
 life form, indicating that phylogenetic conservatism in traits originated
 from the divergence among life forms. The trait-climate relationships were
 also phylogenetically dependent, implying that trait responses are driven
 by climate and phylogeny together. Variance partitioning showed that
 phylogeny and climate explained greater trait variation than life form
 did. Synthesis. The climate-driven hydraulic trait responses in Fabaceae
 still existed with phylogeny being considered, suggesting that this large
 family may be particularly sensitive to climate change. Our results
 emphasize the need to include phylogeny in plant hydraulic adaptation
 studies under future climate change.
description: # Table S1. Full dataset used in this study
 ## Description of the data
 and file structure Coversheet includes paper title; MetaData lists the
 abbreviation, full name and unit of all the variables; RawData is the raw
 data with references listed; any missing values are shown as
 "NA" to minimize ambiguity; Reference is the full reference list
 and data sources.
DOI: 10.5061/dryad.dfn2z358j
title: Data from: Longer days, larger grays: Carryover effects of photoperiod and temperature in gray treefrogs, Hyla versicolor

description: Environmental conditions like temperature and photoperiod can strongly
 shape organisms’ growth and development. For many ectotherms with complex
 life cycles, global change will cause their offspring to experience warmer
 conditions and earlier-season photoperiods, two variables that can induce
 conflicting responses. We experimentally manipulated photoperiod and
 temperature during gray treefrog (Hyla versicolor) larval development to
 examine effects at metamorphosis and during short (10-day) and long
 (56-day) periods post-metamorphosis. Both early- and late-season
 photoperiods (April and August) decreased age and size at metamorphosis
 relative to the average-season (June) photoperiod, while warmer
 temperatures decreased age but increased size at metamorphosis. Warmer
 larval temperatures reduced short-term juvenile growth but had no
 long-term effect. Conversely, photoperiod had no short-term carryover
 effect, but juveniles from early- and late-season larval photoperiods had
 lower long-term growth rates than juveniles from the average-season
 photoperiod. Similar responses to early- and late-season photoperiods may
 be due to reduced total daylight compared to average-season photoperiods.
 However, juveniles from late-season photoperiods selected cooler
 temperatures than early-season juveniles, suggesting not all effects of
 photoperiod were due to total light exposure. Our results indicate that
 despite both temperature and photoperiod affecting metamorphosis, the
 long-term effects of photoperiod may be much stronger than those of
 temperature.
description: # Data from: Longer days, larger grays: carryover effects of photoperiod
 and temperature in gray treefrogs, *Hyla versicolor* --- These data were
 derived from an outdoor mesocosm experiment manipulating photoperiod for
 35 days. All mesocosms contained plankton communities from a local pond.
 All mesocosms contained 25 gray tree frog larvae (*Hyla versicolor*).
 Treefrogs were collected as they metamorphosed and reared in a laboratory
 for an additional 10 days, with a smaller subsample reared for an
 additional 56 days. ## Description of the data and file structure The
 amphibian datasets provide information on timing of and size at
 metamorphosis, growth, internal and external morphology, behavior, and
 food consumption. The plankton datasets contain phytoplankton fluorescence
 measures using a fluorometer, as a a relative measure of abundance, and
 zooplankton abundance counts from 1 mL water subsamples, along with a
 measure of diversity. We also include datasets on mesocosm temperature and
 light data. ## Code/Software We conducted all analyses in RStudio Build
 554 using R version 4.2.1 (R Core Team, 2022). All data manipulation and
 visualization were conducted in the `tidyverse` package (Wickham et al.,
 2019).
DOI: 10.15468/dl.9zq99y
title: Occurrence Download

description: A dataset containing 1872 records in GBIF matching the query:
SELECT
 '480' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 46.479780028101516
 AND decimalLatitude &lt;= 51.21395264452012
 AND decimalLongitude &gt;= 50.355184734369665
 AND decimalLongitude &lt;= 60.13294214751847
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 1872 records were derived from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003843-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftm8jn
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lebruniodendron leptanthum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 92 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003855-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.