cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/3126b2ce0916181327e3a9d0d8804e50
title: Widespread Sampling Biases in Herbaria Revealed from Large-Scale Digitization 1656-2016

description: Non-random collecting practices may bias conclusions drawn from analyses of herbarium records. Recent efforts to fully digitize and mobilize regional floras offer a timely opportunity to assess commonalities and differences in herbarium sampling biases.
 We determined spatial, temporal, trait, phylogenetic, and collector biases in ~5 million herbarium records, representing three of the most complete digitized floras of the world: Australia (AU), South Africa (SA), and New England, USA (NE)
 We identified numerous shared and unique biases among these regions. Shared biases included specimens i) collected close to roads and herbaria; ii) collected more frequently during spring; iii) of threatened species collected less frequently; and iv) of close relatives collected in similar numbers. Regional differences included i) over-representation of graminoids in SA and AU and of annuals in AU; and ii) peak collection during the 1910s in NE, 1980s in SA, and 1990s in AU. Finally, in all regions, a disproportionately large percentage of specimens were collected by a few individuals. These mega-collectors, and their associated preferences and idiosyncrasies, may have shaped patterns of collection bias via ‘founder effects’. 
 Studies using herbarium collections should account for sampling biases and future collecting efforts should avoid compounding these biases.
DOI: 10.5281/zenodo.10276439
title: Data for "Demographic inequalities in digital spaces in China: The case of Weibo"

description: These data underlie the results and figures used in the article "Demographic inequalities in digital spaces in China: The case of Weibo" (https://doi.org/10.36190/2023.01). This research was presented at the ICWSM workshop "Data for the wellbeing of the most vulnerable" on June 5, 2023.
The corresponding workflow can be found in the linked repository.
`README.md` provides more details.
DOI: 10.5281/zenodo.10276438
title: Data for "Demographic inequalities in digital spaces in China: The case of Weibo"

description: These data underlie the results and figures used in the article "Demographic inequalities in digital spaces in China: The case of Weibo" (https://doi.org/10.36190/2023.01). This research was presented at the ICWSM workshop "Data for the wellbeing of the most vulnerable" on June 5, 2023.
The corresponding workflow can be found in the linked repository.
`README.md` provides more details.
DOI: 10.5281/zenodo.10352941
title: EZBugs4Py: A benchmark of simple, easily reproducible Python bugs

description: This is the appendix for paper entitled "EZBugs4Py: A benchmark of simple, easily reproducible Python bugs" submitted to MSR 2024.
 
The dataset itself is available on GitHub.
This appendix contains:

The results of GPT in the following tasks: automated program repair for to so-called "buggy" versions of the programs, the "failing" versions of the program, and the code synthesis based on the descriptions of the tasks.
The exact prompts we used in the paper.
The runner scripts to query GPT-4.
The categorization of the bugs.
DOI: 10.5281/zenodo.10352942
title: EZBugs4Py: A benchmark of simple, easily reproducible Python bugs

description: This is the appendix for paper entitled "EZBugs4Py: A benchmark of simple, easily reproducible Python bugs" submitted to MSR 2024.
 
The dataset itself is available on GitHub.
This appendix contains:

The results of GPT in the following tasks: automated program repair for to so-called "buggy" versions of the programs, the "failing" versions of the program, and the code synthesis based on the descriptions of the tasks.
The exact prompts we used in the paper.
The runner scripts to query GPT-4.
The categorization of the bugs.
DOI: 10.5281/zenodo.10355500
title: THE CULTURAL ATHE CULTURAL ASPECT IN TEACHING ENGLISH LANGUAGESPECT IN TEACHING ENGLISH LANGUAGE
DOI: 10.6084/m9.figshare.24786660.v1
title: Images Triatominae - Ecological Informatics.rar

description: This is data used in an analysis in a study that is being considered for publication in the journal Ecological Informatics. The access link will be available in the journal manuscript.
DOI: 10.5281/zenodo.10355501
title: THE CULTURAL ATHE CULTURAL ASPECT IN TEACHING ENGLISH LANGUAGESPECT IN TEACHING ENGLISH LANGUAGE
DOI: 10.5281/zenodo.10003622
title: Photometric data for 2020 & 2021 perihelion JFCs

description: The csv files for all 2020 and 2021 perihelion JFCs detectable by the Asteroid Terrestrial-impact Last Alert System (ATLAS).
image - image identifier in ATLAS
mjd - Modified Julian Date
rh - Heliocentric distance (au) 
delta - Geocentric distance (au)
alpha - Phase angle (°)
appix - aperture in pixels 
x - X position of object centre (pixels)
y - Y position of object centre (pixels)
counts - Counts
sky - Sky background
err - Sky background uncertainty
snr - Signal to noise ratio
mag - Magnitude
mag_err - Magnitude uncertainty
afp - Afρ (cm)
afp_err - Afρ uncertainty (cm)
afp_zero - A(0°)fρ (cm)
afp_zero_err - A(0°)fρ uncertainty (cm)
filter - ATLAS filter (c/o)
mdust - very rough estimate of mass loss rate (kg/s) - assuming albedo = 0.1, dust density = 1000g/cm^3, grain radius = 1μm. Please refer to the in-text upper limits of mass loss rate and the assumed values associated with the calculation in-text. 
mdust_err - uncertainty in mass loss rate
DOI: 10.5281/zenodo.10355489
title: Photometric data for 2020 & 2021 perihelion JFCs

description: The csv files for all 2020 and 2021 perihelion JFCs detectable by the Asteroid Terrestrial-impact Last Alert System (ATLAS).
image - image identifier in ATLAS
mjd - Modified Julian Date
rh - Heliocentric distance (au) 
delta - Geocentric distance (au)
alpha - Phase angle (°)
appix - aperture in pixels 
x - X position of object centre (pixels)
y - Y position of object centre (pixels)
counts - Counts
sky - Sky background
err - Sky background uncertainty
snr - Signal to noise ratio
mag - Magnitude
mag_err - Magnitude uncertainty
afp - Afρ (cm)
afp_err - Afρ uncertainty (cm)
afp_zero - A(0°)fρ (cm)
afp_zero_err - A(0°)fρ uncertainty (cm)
filter - ATLAS filter (c/o)
mdust - very rough estimate of mass loss rate (kg/s) - assuming albedo = 0.1, dust density = 1000g/cm^3, grain radius = 1μm. Please refer to the in-text upper limits of mass loss rate and the assumed values associated with the calculation in-text. 
mdust_err - uncertainty in mass loss rate
DOI: 10.6084/m9.figshare.24787347
title: Supplementary Material for: Abrocitinib Provides Rapid and Sustained Improvement in Skin Pain and Is Associated With Improved Quality of Life Outcomes in Adult and Adolescent Patients With Moderate-to-Severe Atopic Dermatitis

description: Background: Skin pain in atopic dermatitis (AD) increases with disease severity and is associated with substantial quality of life (QoL) burden. 
Objectives: To evaluate abrocitinib efficacy on skin pain and QoL in adults and adolescents with moderate-to-severe AD.
Methods: This post hoc analysis included data with abrocitinib administered as monotherapy (pooled phase 2b [NCT02780167] and phase 3 JADE MONO-1 [NCT03349060] and MONO-2 [NCT03575871]) or in combination with topical therapy (phase 3 JADE COMPARE [NCT03720470] and JADE TEEN [NCT03796676]). Patients received oral, once-daily abrocitinib 200 mg, abrocitinib 100 mg, or placebo for 12 or 16 weeks (JADE COMPARE). Skin pain was rated using the Pruritus and Symptoms Assessment for Atopic Dermatitis (PSAAD) skin pain Numerical Rating Scale (NRS) item (“How painful was your skin over the past 24 hours?”) on a scale from 0 (not painful) to 10 (extremely painful). Itch (Peak Pruritus NRS) and QoL (Dermatology Life Quality Index or Children’s Dermatology Life Quality Index) were assessed. Least squares mean (LSM) change from baseline was analyzed using mixed effects repeated measures modeling.
Results: A total of 1822 patients (monotherapy pool, n=942; JADE COMPARE, n=595; JADE TEEN; n=285) were analyzed. LSM change from baseline in PSAAD skin pain score was significantly greater with abrocitinib versus placebo from week 2 through week 12 or 16 across all 3 study populations and occurred in a dose-dependent manner. A greater proportion of patients achieved a ≥4-point improvement from baseline in PSAAD skin pain score with abrocitinib (200 mg and 100 mg) versus placebo in the monotherapy pool (56% and 38% vs 12%; week 12), JADE COMPARE (72% and 52% vs 26%; week 16), and JADE TEEN (51% and 60% vs 31%; week 12). Additionally, a greater proportion of patients achieved a stringent threshold of skin pain improvement (PSAAD skin pain score &lt;2) with abrocitinib versus placebo. Adults and adolescents who achieved a ≥4-point improvement in skin pain reported greater QoL improvement than those who did not achieve a ≥4-point improvement. A positive correlation (≥0.3) was observed between skin pain and QoL and separately between skin pain and itch across the 3 study populations.
Conclusion: Abrocitinib as monotherapy or in combination with topical therapy improved skin pain and was associated with improved QoL in both adults and adolescents with moderate-to-severe AD across all evaluated studies.
DOI: 10.6084/m9.figshare.24787347.v1
title: Supplementary Material for: Abrocitinib Provides Rapid and Sustained Improvement in Skin Pain and Is Associated With Improved Quality of Life Outcomes in Adult and Adolescent Patients With Moderate-to-Severe Atopic Dermatitis

description: Background: Skin pain in atopic dermatitis (AD) increases with disease severity and is associated with substantial quality of life (QoL) burden. 
Objectives: To evaluate abrocitinib efficacy on skin pain and QoL in adults and adolescents with moderate-to-severe AD.
Methods: This post hoc analysis included data with abrocitinib administered as monotherapy (pooled phase 2b [NCT02780167] and phase 3 JADE MONO-1 [NCT03349060] and MONO-2 [NCT03575871]) or in combination with topical therapy (phase 3 JADE COMPARE [NCT03720470] and JADE TEEN [NCT03796676]). Patients received oral, once-daily abrocitinib 200 mg, abrocitinib 100 mg, or placebo for 12 or 16 weeks (JADE COMPARE). Skin pain was rated using the Pruritus and Symptoms Assessment for Atopic Dermatitis (PSAAD) skin pain Numerical Rating Scale (NRS) item (“How painful was your skin over the past 24 hours?”) on a scale from 0 (not painful) to 10 (extremely painful). Itch (Peak Pruritus NRS) and QoL (Dermatology Life Quality Index or Children’s Dermatology Life Quality Index) were assessed. Least squares mean (LSM) change from baseline was analyzed using mixed effects repeated measures modeling.
Results: A total of 1822 patients (monotherapy pool, n=942; JADE COMPARE, n=595; JADE TEEN; n=285) were analyzed. LSM change from baseline in PSAAD skin pain score was significantly greater with abrocitinib versus placebo from week 2 through week 12 or 16 across all 3 study populations and occurred in a dose-dependent manner. A greater proportion of patients achieved a ≥4-point improvement from baseline in PSAAD skin pain score with abrocitinib (200 mg and 100 mg) versus placebo in the monotherapy pool (56% and 38% vs 12%; week 12), JADE COMPARE (72% and 52% vs 26%; week 16), and JADE TEEN (51% and 60% vs 31%; week 12). Additionally, a greater proportion of patients achieved a stringent threshold of skin pain improvement (PSAAD skin pain score &lt;2) with abrocitinib versus placebo. Adults and adolescents who achieved a ≥4-point improvement in skin pain reported greater QoL improvement than those who did not achieve a ≥4-point improvement. A positive correlation (≥0.3) was observed between skin pain and QoL and separately between skin pain and itch across the 3 study populations.
Conclusion: Abrocitinib as monotherapy or in combination with topical therapy improved skin pain and was associated with improved QoL in both adults and adolescents with moderate-to-severe AD across all evaluated studies.
DOI: 10.6084/m9.figshare.24785745.v1
title: PCGs annotation of <i>Diomorus aiolomorphi</i>

description: The .gff3 file contains the protein-coding genes (PCGs) annotation information of the <i>Diomorus aiolomorphi</i> genome.
DOI: 10.6084/m9.figshare.23912094
title: Scripts

description: Scripts used for analysis and figures in the study "The limits of stress-tolerance for zooplankton resting stages in freshwater ponds" by Santos & Ebert
DOI: 10.6084/m9.figshare.23912094.v1
title: Scripts

description: Scripts used for analysis and figures in the study "The limits of stress-tolerance for zooplankton resting stages in freshwater ponds" by Santos & Ebert
DOI: 10.57745/zxd60r
title: DataSet-UGENT-T31.tab

description: :unav
DOI: 10.7910/dvn/mcnent/mazso2
title: Tesla deaths.xlsx - Deaths.tab

description: An updated record of Tesla fatalities and Tesla accident deaths that have been reported and as much related crash data as possible (e.g. location of crash, names of deceased, etc.). This sheet also tallies claimed and confirmed Tesla autopilot crashes, i.e. instances when Autopilot was activated during a Tesla crash that resulted in death.
DOI: 10.6073/pasta/285f2634ec0c89c3921ce60df5c89b31
title: Community and Conservation Survey in Urban, Suburban and Rural Massachusetts 2013-2018

description: The dynamics of forest cover and the ecosystem services they provide are shaped by the land use and management decisions of thousands of individual landowners and the land use planning and conservation actions of towns and environmental organizations. Through an interdisciplinary investigation of the land use and forest conservation practices across two urban-to-rural transects between Boston and Central Massachusetts, we investigated the complex and coupled socio-ecological processes that shape the structure, function, and transformation of forested landscapes and how examine these processes may vary along urban-to-rural gradients.
 The survey data archived here is one element of this larger coupled natural-human systems project. The Community and Conservation Survey collected data regarding landowners’ attitudes and management practices on a variety of issues linked to conservation and the use of their own land. The objectives were to collect data that (a) increase our understanding of how landowners’ attitudes and behaviors vary across urban-to-rural gradients and (b) can be coupled with biogeochemical measurements across the study region to model variation in management behaviors.
DOI: 10.3886/e195721
title: Association of Tropical Biology and Conservation (ATBC) 2019 in Madagascar: Its impact on the national scientific

description: This was collected during the registration of the international conference ATBC 2019 and Post survey from the questionnaire we edited.

Conferences of the Association of Tropical Biology and Conservation aim to foster scientific understanding and conservation of tropical
ecosystems by supporting research communication and collaboration among
biologists and conservation practitioners working in the tropics. The annual
meeting in 2019 was held in Antananarivo, Madagascar. To assess the importance
of the meeting in the academic and professional development of the 89 Malagasy
participants, an anonymous questionnaire survey was conducted 12 months
after the meeting. Feedback from the respondents indicated that the three most
important aspects of the meeting were developing networks (40.0%); improving professional
skills (encompassing public speaking, data analysis, comments on their
presentations, writing capacity, and ability to publish) (30.0%); and gaining visibility
(16.7%). Among the respondents, 49% have subsequently become interest in problems
associated with deforestation, 28.6% in topics related to conservation biology,
14.3% to<b> </b>new approaches for solving conservation problems,
and 8.2% in food security issues. The survey found that language barriers and
lack of funds for research (about 64.6% of both cases) were the most limiting
factors to advance research programs for national scientists. The meeting also
acknowledged three Malagasy scientists who received Association
of Tropical Biology and Conservation awards. An important outcome was the “Ivato
Declaration” a petition to bring to the world’s attention the current
conservation situation on the island and for which nearly 7000 people from 124
countries signed. The survey indicated that national scientists and students received
multiple benefits and new opportunities from their participation in the meeting.


<br>
description: Presence of Common Scales: Several Likert-type scales were used<br>
description: We explored the conference's impact
on the professional lives of the attendees, as well as positive changes or
advancements in their careers resulting from their participation in the meeting
and insights into the long-term benefits that such international conferences
can offer to local researchers. <br>To ensure a comprehensive analysis, we also added
questions to explore any potential limitations experienced by participating Malagasy
scientists during the 2019 ATBC by identifying challenges or barriers, with the
aim to make informed recommendations to enhance future conference experiences
for attendees.
description: Smallest Geographic Unit: Madagascar
description: mail questionnaire; record abstracts;
DOI: 10.34740/kaggle/ds/3068838
title: Bongabdo
DOI: 10.18462/iir.icr.2023.0675
title: Analysis of the refrigerant‐side temperature profiles in the coil of an air-to‐water heat pump.
DOI: 10.6084/m9.figshare.24786918.v1
title: Datasets for Dalapicolla et al., 2024. Phylogenomics and species delimitation of an abundant and little-studied Amazonian forest spiny rat. Molecular Phylogenetics and Evolution, 107992.

description: All scripts are available at <b>https://github.com/jdalapicolla/SpeciesDelimitation</b><b>Permits:</b> SISBIO[#14419-3] and SISGEN [#A58279D]<br><b>GENOMIC DATA:</b><b>VCF:</b> proechimys.vcf.gz and proechimys.vcf.gz.tbi<b>Loci data:</b> proechimys_184ind_ipyrad.7z<b>Nexus A</b><b>lignments for SVDQuartets:</b> proechimys_complete_svd_final_speciestrees.nex (complete dataset); proechimys_subset1_svd_indtree.nex (Subset 1); proechimys_subset2_svd_speciestree.nex (Subset 2);<b>Phylip alignments for IQTree:</b> proechimys_MPE1_184.phylip (complete dataset); proechimys_subset1.phylip (Subset 1); proechimys_subset2.phylip (Subset 2).<br><b>SUPPLEMENTARY MATERIAL</b><b>Appendix A: </b>A brief taxonomic history of the genus <i>Proechimys</i>.<b>Appendix B: </b>Summary of mitochondrial DNA (mtDNA) data available for the genus <i>Proechimys</i>.<b>Appendix C: </b>Details on SNPs calling and filtering steps used in genomic data.<b>Appendix D: </b>Details on repeatability and filtering steps used in morphometric data.<b>Appendix E: </b>Comments on the nomenclatural decisions regarding the species-group taxa of the genus <i>Proechimys</i>.<b>Table S1: </b>Samples used in the genomics analyses.<b>Table S2: </b>Morphometric data consisting of raw values for 22 morphometric variables.<b>Table S3: </b>RAD processing results for 184 genomic samples.<b>Table S4: </b>ICC test for cranial measurements with upper and lower values for the confidence interval.<b>Table S5: </b>Posterior probabilities (PP) found in all demographic scenarios in the iBP&P analyses.<b>Table S6: </b>Patterson’s D (ABBA-BABA), and related statistics.<b>Table S7: </b>Divergence times in millions of years ago (Ma) for the species tree of <i>Proechimys.</i><b>Table S8: </b>Available cytogenetic, mtDNA, and nuDNA data in the literature for delimited species of <i>Proechimys.</i><b>Figure S1: </b>Geographical distribution of genomic samples.<b>Figure S2: </b>Geographical distribution of morphometric samples.<b>Figure S3: </b>The 29 cranial measurements with their respective acronyms.<b>Figure S4: </b>Details of clade A in the individual phylogenetic tree.<b>Figure S5: </b>Details of clade B in the individual phylogenetic tree.<b>Figure S6: </b>Details of clade C, D, E, F and G in the individual phylogenetic tree.<b>Figure S7: </b>Partitions used in iBP&P.<b>Figure S8: </b>Species tree and IQTree2 using 17,162 unlinked SNPs subset 2.<b>Figure S9: </b>The branch-specific statistic<i>f</i><sub>b</sub>(F-branch).
DOI: 10.6084/m9.figshare.24786918
title: Datasets for Dalapicolla et al., 2024. Phylogenomics and species delimitation of an abundant and little-studied Amazonian forest spiny rat. Molecular Phylogenetics and Evolution, 107992.

description: All scripts are available at <b>https://github.com/jdalapicolla/SpeciesDelimitation</b><b>Permits:</b> SISBIO[#14419-3] and SISGEN [#A58279D]<br><b>GENOMIC DATA:</b><b>VCF:</b> proechimys.vcf.gz and proechimys.vcf.gz.tbi<b>Loci data:</b> proechimys_184ind_ipyrad.7z<b>Nexus A</b><b>lignments for SVDQuartets:</b> proechimys_complete_svd_final_speciestrees.nex (complete dataset); proechimys_subset1_svd_indtree.nex (Subset 1); proechimys_subset2_svd_speciestree.nex (Subset 2);<b>Phylip alignments for IQTree:</b> proechimys_MPE1_184.phylip (complete dataset); proechimys_subset1.phylip (Subset 1); proechimys_subset2.phylip (Subset 2).<br><b>SUPPLEMENTARY MATERIAL</b><b>Appendix A: </b>A brief taxonomic history of the genus <i>Proechimys</i>.<b>Appendix B: </b>Summary of mitochondrial DNA (mtDNA) data available for the genus <i>Proechimys</i>.<b>Appendix C: </b>Details on SNPs calling and filtering steps used in genomic data.<b>Appendix D: </b>Details on repeatability and filtering steps used in morphometric data.<b>Appendix E: </b>Comments on the nomenclatural decisions regarding the species-group taxa of the genus <i>Proechimys</i>.<b>Table S1: </b>Samples used in the genomics analyses.<b>Table S2: </b>Morphometric data consisting of raw values for 22 morphometric variables.<b>Table S3: </b>RAD processing results for 184 genomic samples.<b>Table S4: </b>ICC test for cranial measurements with upper and lower values for the confidence interval.<b>Table S5: </b>Posterior probabilities (PP) found in all demographic scenarios in the iBP&P analyses.<b>Table S6: </b>Patterson’s D (ABBA-BABA), and related statistics.<b>Table S7: </b>Divergence times in millions of years ago (Ma) for the species tree of <i>Proechimys.</i><b>Table S8: </b>Available cytogenetic, mtDNA, and nuDNA data in the literature for delimited species of <i>Proechimys.</i><b>Figure S1: </b>Geographical distribution of genomic samples.<b>Figure S2: </b>Geographical distribution of morphometric samples.<b>Figure S3: </b>The 29 cranial measurements with their respective acronyms.<b>Figure S4: </b>Details of clade A in the individual phylogenetic tree.<b>Figure S5: </b>Details of clade B in the individual phylogenetic tree.<b>Figure S6: </b>Details of clade C, D, E, F and G in the individual phylogenetic tree.<b>Figure S7: </b>Partitions used in iBP&P.<b>Figure S8: </b>Species tree and IQTree2 using 17,162 unlinked SNPs subset 2.<b>Figure S9: </b>The branch-specific statistic<i>f</i><sub>b</sub>(F-branch).
DOI: 10.18462/iir.icr.2023.0669
title: Further TTRC vs. TWRC methods research applied to mechanical vapor compression refrigeration cycle for effectiveness improvement.
DOI: 10.6073/pasta/db052d4e207385c3a2a30ff5881b55a4
title: Incidence of Ticks and Tick Bites at Harvard Forest since 2006

description: In an effort to determine exposure to ticks and to determine appropriate preventative measures to reduce the occurrence of Lyme Disease in summer research interns at Harvard Forest, data are collected about where students work at Harvard Forest; the time spent in the field; the number of ticks students find on themselves after each trip to the field; and the number of ticks that actually bite and embed themselves in the skin. From these data, we estimate areas of high tick densities and estimate time of summer during which ticks are most prevalent. The results are used to develop recommendations for appropriate precautions that students can take to avoid tick-borne diseases.
DOI: 10.6084/m9.figshare.23912046
title: Datasets

description: Datasets used for the study "The limits of stress-tolerance for zooplankton resting stages in freshwater ponds"