cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1187241.10fu
title: SH1187241.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3886/e243172
title: AH Deaths by Year, Sex, and Age for 2015-2020

description: Death counts by age and sex for years 2015-2020. Data for 2015-2019 are final. Data for 2020 are provisional.
description: (Downloaded 1/9/2026)
DOI: 10.3886/e243172v1
title: AH Deaths by Year, Sex, and Age for 2015-2020

description: Death counts by age and sex for years 2015-2020. Data for 2015-2019 are final. Data for 2020 are provisional.
description: (Downloaded 1/9/2026)
DOI: 10.15156/bio/sh1187242.10fu
title: SH1187242.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1187245.10fu
title: SH1187245.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1187248.10fu
title: SH1187248.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.h2ksgz
title: Occurrence Download

description: A dataset containing 783 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC0 1.0",
 "Month is August",
 "TaxonKey is Crotalus atrox"
 ]
}

 The dataset includes 783 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005132-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17468623
title: NMRFx Runabout Workshop Data

description: Tutorial data for assigning the protein Ubiquitin using the RunAbout tool in NMRFx

The datasets were processed from the raw (FID) files available in the

Ubiquitin NMR Resource
DOI: 10.6084/m9.figshare.30334040
title: Rinderine suppresses African swine fever virus replication in porcine alveolar macrophages by dual targeting of membrane-associated profilin 1 and phosphatidylethanolamine

description: African swine fever (ASF) is a highly contagious disease caused by African swine fever virus (ASFV), posing a serious threat to the global pig industry. Natural small molecules have been reported to exhibit anti-ASFV potential. This study utilized the previously established high-throughput platform for screening ASFV inhibitors to identify rinderine (RIN), a pyrrolizidine alkaloid that not only significantly inhibits ASFV replication but also maintains sustained anti-ASFV activity at 24, 48, and 72 hours postinfection. Moreover, RIN mainly suppresses the early stages of ASFV replication, particularly by inhibiting ASFV attachment to primary porcine alveolar macrophages (PAMs). Mechanistically, mass spectrometry-based cellular thermal shift assay, further experimental validation and molecular docking analysis indicate that profilin 1 (PFN1) is a key target protein mediating the inhibitory effects of RIN on ASFV attachment to PAMs. Structural prediction analysis, co-immunoprecipitation assay, and confocal microscopy demonstrate that RIN disrupts the interaction between PFN1 and actin, thereby decreasing the actin remodelling. Notably, untargeted metabolomics profiling and further experiments reveal that RIN reduces the phosphatidylethanolamine level derived from the glycerophospholipid metabolism pathway and decreases the membrane permeability of PAMs, contributing to its anti-ASFV activity. In conclusion, integrative proteomics and untargeted metabolomics analyses demonstrate that RIN exerts the antiviral effects against ASFV primarily by targeting proteins and metabolites associated with cell membrane formation and function, providing a novel insight into the prevention and control of ASF.
DOI: 10.6084/m9.figshare.30334040.v1
title: Rinderine suppresses African swine fever virus replication in porcine alveolar macrophages by dual targeting of membrane-associated profilin 1 and phosphatidylethanolamine

description: African swine fever (ASF) is a highly contagious disease caused by African swine fever virus (ASFV), posing a serious threat to the global pig industry. Natural small molecules have been reported to exhibit anti-ASFV potential. This study utilized the previously established high-throughput platform for screening ASFV inhibitors to identify rinderine (RIN), a pyrrolizidine alkaloid that not only significantly inhibits ASFV replication but also maintains sustained anti-ASFV activity at 24, 48, and 72 hours postinfection. Moreover, RIN mainly suppresses the early stages of ASFV replication, particularly by inhibiting ASFV attachment to primary porcine alveolar macrophages (PAMs). Mechanistically, mass spectrometry-based cellular thermal shift assay, further experimental validation and molecular docking analysis indicate that profilin 1 (PFN1) is a key target protein mediating the inhibitory effects of RIN on ASFV attachment to PAMs. Structural prediction analysis, co-immunoprecipitation assay, and confocal microscopy demonstrate that RIN disrupts the interaction between PFN1 and actin, thereby decreasing the actin remodelling. Notably, untargeted metabolomics profiling and further experiments reveal that RIN reduces the phosphatidylethanolamine level derived from the glycerophospholipid metabolism pathway and decreases the membrane permeability of PAMs, contributing to its anti-ASFV activity. In conclusion, integrative proteomics and untargeted metabolomics analyses demonstrate that RIN exerts the antiviral effects against ASFV primarily by targeting proteins and metabolites associated with cell membrane formation and function, providing a novel insight into the prevention and control of ASF.
DOI: 10.5281/zenodo.17468622
title: NMRFx Runabout Workshop Data

description: Tutorial data for assigning the protein Ubiquitin using the RunAbout tool in NMRFx

The datasets were processed from the raw (FID) files available in the

Ubiquitin NMR Resource
DOI: 10.25921/erd6-6j14
title: NOAA/WDS Paleoclimatology - Holmes - Caramavida - ARAR - ITRDB CHIL009

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
description: NOAA Template Chronology file added 2018-12-13. NOAA Template Raw Measurements file added 2019-04-29.
DOI: 10.25921/eawh-8j72
title: NOAA/WDS Paleoclimatology - Peterson - Mount Hood Low - TSME - ITRDB OR064

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
description: NOAA Template Raw Measurements file added 2019-02-08.
DOI: 10.25921/e6c6-9535
title: NOAA/WDS Paleoclimatology - González fire data from Quillelhue, north Lanin volcano - IMPD CHQUI001

description: Records of past fire occurrence from tree rings, charcoal found in lake sediments, and other proxies. Parameter keywords describe what was measured in this data set.  Additional summary information can be found in the abstracts of papers listed in the data set citations.  Additional information on the International Multiproxy Database (IMPD) data set procedures are also available.
DOI: 10.25921/e9gt-w192
title: NOAA/WDS Paleoclimatology - Schweingruber - Novoja Rieka - LAGM - ITRDB RUSS080

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
description: NOAA Template Chronology file added 2019-01-09. NOAA Template Raw Measurements file added 2019-04-08.
DOI: 10.25921/ewtj-5k54
title: NOAA/WDS Paleoclimatology - Timbabas Reefs, Sirbia Island, Porto de Galinhas, Sao Vicente - Radiocarbon Data

description: Δ14C records are reported for post-bomb corals from three sites in the tropical Atlantic Ocean. In corals from 18°S in the Brazil Current, Δ14C values increased from ca. −58% in the early 1950s to +138% by 1974, then decreased to 110‰ by 1982. Shorter records from 8ºS off Brazil and from the Cape Verde Islands (17°N) showed initially higher Δ14C values before 1965 than those at 18ºS, but showed lower rates of increase of Δ14C during the early 1960s. There is general agreement between the coral results and Δ14C of dissolved inorganic carbon (DIC) measured in seawater previously for locations in the tropical Atlantic Ocean. Δ14C values at our tropical ocean sites increased at a slower rate than those observed previously in the temperate North Atlantic (Florida and Bermuda), owing to the latter's proximity to the bomb 14C input source in the northern, hemisphere. Model results show that from 1960–1980 the Cape Verde coral and selected DIG Δ14C values from the North Equatorial Current agree with that calculated for the North Atlantic based on an isopycnal mixing model with a constant water mass renewal rate between surface and subsurface waters. This is in contrast to Δ14C values in Bermuda corals that showed higher post-bomb values than those predicted using a constant water mass renewal rate, hence indicating that ventilation in the western north Atlantic Ocean had decreased by a factor of 3 during the 1960s and 1970s (Druffel 1989).
DOI: 10.25921/evm6-pv36
title: NOAA/WDS Paleoclimatology - Brown fire data from Lower Pine Spring - IMPD USLPS001

description: Records of past fire occurrence from tree rings, charcoal found in lake sediments, and other proxies. Parameter keywords describe what was measured in this data set.  Additional summary information can be found in the abstracts of papers listed in the data set citations.  Additional information on the International Multiproxy Database (IMPD) data set procedures are also available.
DOI: 10.25921/ey13-r786
title: NOAA/WDS Paleoclimatology - Schweingruber - Cortina d'Ampezzo - PCAB - ITRDB ITAL006

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
description:  NOAA Template Chronology file added 2019-01-08. NOAA Template Raw Measurements file added 2019-02-05.
DOI: 10.25921/ez57-kk80
title: NOAA/WDS Paleoclimatology - Lloyd - Nome Creek below treeline - PCGL - ITRDB AK040

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
description: NOAA Template Chronology file added 2018-12-20. NOAA Template Raw Measurements file added 2019-02-08.
DOI: 10.25921/ezkq-8p67
title: NOAA/WDS Paleoclimatology - Anderson et al 2001 Sed. Concentrations of Phosphorus and Carbon

description: Defining the transformations of phosphorus (P) in sediments is critical to assessing the geochemical behavior of sedimentary P and the behavior of reactive P (Preactive= Poxide-associated + Pauthigenic + Porganic) relative to organic carbon (Corganic). This study includes the determination of P components and Corganic concentrations on samples from sites in the California Current region (Ocean Drilling Program (ODP) leg 167, sites 1010, 1011, 1012, 1014, 1016, and 1021), in the Benguela Current region (ODP leg 175, sites 1082, 1084, and 1085), and on Blake Nose in the western Atlantic (ODP leg 17 1B, sites 1050 and 1052). Sample depths range up to 650 m, and ages range up to 65 Ma. Our data demonstrate the transformation of labile forms of P (Porganic and Poxide-associated) to Pauthigenic throughout the sediment column in all redox states and at all sedimentation rates investigated, until a substantial portion of reactive P is in the authigenic form (>80%). (C/P)organic ratios are always greater than or equal to the Redfield Ratio in all of the sediments we studied. Sediments with Corganic concentrations ≤2 wt % have Corganic/Preactive ratios less than the Redfield Ratio, and Corganic/Preactive ratios increase linearly with Corganic, consistent with degradation of Corganic with age. In general, Corganic/Preactive ratios for sediments with Corganic concentrations ≥2 wt %, from a variety of redox states and sedimentation rates, center around the Redfield Ratio, although some ratios are as high as 3 times the Redfield Ratio. However, Corganic/ Preactive ratios (up to 400) do not approach the high ratios observed for (C/P)organic ratios (up to 4500). Because of the efficient transfer of labile forms of P to Pauthigenic, Corganic/Preactive ratios better describe the geochemical behavior of sedimentary P.
DOI: 10.25921/ebfy-6c75
title: NOAA/WDS Paleoclimatology - Linderholm - Angerusjärvi - PISY - ITRDB SWED319

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
description: NOAA Template Chronology file added 2018-12-19. NOAA Template Raw Measurements file added 2019-02-05.
DOI: 10.25921/eyg9-5d81
title: NOAA/WDS Paleoclimatology - Schweingruber - Bisse de Saxon VS - PCAB - ITRDB SWIT131

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
description:  NOAA Template Chronology file added 2019-01-08. NOAA Template Raw Measurements file added 2019-02-05.
DOI: 10.25921/ezqs-yy54
title: NOAA/WDS Paleoclimatology - Camp Century - Microparticle Data

description: Four recent ice core studies reveal a consistently recurring temporal correlation between increased microparticle concentrations and lower global temperatures (more negative 13O/16O ratios). A continuous 900-year record of particle deposition from the 101-m South Pole core was obtained by analyzing 6218 samples. The concentration of insoluble particles with 
 increases substantially between A.D. 1450 and 1850, a period of slightly reduced global temperatures encompassing the latest Neoglacial or Little Ice Age. There is evidence suggesting that some of the additional material may be volcanic, although further substantiation is required.

The microparticle analyses of selected sections from three deep cores coupled with the respective σ18O measurements reveal that in all three cores the last glacial or Late Wisconsin ice contained great quantities of microparticles. The ratio of the average microparticle concentration in Wisconsin sections to that in Holocene sections is 6 for the 905-m Dome C, Antarctica core, 3 for the 2164-m Byrd Station, Antarctica core and 12 for the 1387-m Camp Century, Greenland core. Microparticle increases of this magnitude can not be accounted for merely by a reduction in net accumulation. These data suggest that the global atmosphere was heavily laden with suspended particulates near the end of the last major glaciation.
DOI: 10.25921/e83h-yz02
title: NOAA/WDS Paleoclimatology - Paleocene-Eocene Thermal Maximum(~55MyrBP) Isotope and Mg/Ca Data

description: A rapid increase in greenhouse gas levels is thought to have fueled global warming at the Paleocene-Eocene Thermal Maximum (PETM). Foraminiferal magnesium/calcium ratios indicate that bottom waters warmed by 4 to 5C, similar to tropical and subtropical surface ocean waters, implying no amplification of warming in high-latitude regions of deep-water formation under ice-free conditions. Intermediate waters warmed before the carbon isotope excursion, in association with downwelling in the North Pacific and reduced Southern Ocean convection, supporting changing circulation as the trigger for methane hydrate release. A switch to deep convection in the North Pacific at the PETM onset could have amplified and sustained warming.
DOI: 10.25921/e1vp-tg73
title: NOAA/WDS Paleoclimatology - Northern Arabian Sea Oxygen Minimum Zone(OMZ) during the last 225,000 years

description: The northern Arabian Sea is one of the few regions in the open ocean where thermocline water is severely depleted in oxygen. The intensity of this oxygen minimum zone (OMZ) has been reconstructed over the past 225,000 years using proxies for surface water productivity, water column denitrification, winter mixing, and the aragonite compensation depth (ACD). Changes in OMZ intensity occurred on orbital and suborbital timescales. Lowest O2 levels correlate with productivity maxima and shallow winter mixing. Precession-related productivity maxima lag early summer insolation maxima by ∼6 kyr, which we attribute to a prolonged summer monsoon season related to higher insolation at the end of the summer. Periods with a weakened or even non-existent OMZ are characterized by low productivity conditions and deep winter mixing attributed to strong and cold winter monsoonal winds. The timing of deep winter mixing events corresponds with that of periods of climatic cooling in the North Atlantic region.