cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20037453.v1
title: Larvae of migratory fish (Teleostei: Ostariophysi) in the lotic remnant of the Paraná River in Brazil

description: ABSTRACT Fish larvae and adults are morphologically distinct from each other and have different ecological requirements. Research on the dynamics of ichthyoplankton provides valuable information about the early stages of the life cycle of fish. This study analyzed the temporal and spatial distribution of the larval stages of three migratory species - Salminus brasiliensis (Cuvier, 1816), Prochilodus lineatus (Valenciennes, 1836) and Pseudoplatystoma corruscans (Agassiz, 1829) - to identify possible spawning areas in the last lotic remnant of the upper Paraná River, in the Brazilian territory. A total of 26 points were sampled monthly from October 2003 to November 2004. The PERMANOVA detected significant differences between the months only for S. brasiliensis (Pseudo-F = 3.88, p = 0.0021) and P. corruscans (Pseudo-F = 3.35, p = 0.004). Among the environmental variables, temperature was the most important and the Mantel test detected a significant correlation between temperature and the densities, only for P. lineatus (r = 0.09, p = 0.03). The species in our data chose for spawning tributaries that are not dammed, of which most are outside conservation areas. Therefore, recruitment, maintenance and possible actions aiming to recover the stocks of these species are dependent on the conservation of tributaries and floodplain lakes in the region, in addition to monitoring to prevent fishing during the reproductive period.
DOI: 10.6084/m9.figshare.20037454
title: Polyplacophora (Mollusca) from reef ecosystems and associations with macroalgae on the Coast of Alagoas, Northeastern Brazil

description: ABSTRACT Brazilian marine molluscs, especially Gastropoda and Bivalvia, are relatively well studied. However, information on the class Polyplacophora is more scarce, particularly on reef-dwelling forms. This study aimed to qualitatively and quantitatively analyze aspects of polyplacophorans from reef ecosystems and their associations with macroalgae on the coast of Maceió (state of Alagoas, Brazilian Northeast). The study area included five coral reefs at Ipioca, Ponta do Prego, Ponta do Meirim, Riacho Doce and Ponta Verde, as well as two sandstone reefs, located in Guaxuma and Sereia. The samples were obtained by snorkelling along the intertidal and subtidal reef zones to a depth of up to five meters during low tides, between 2009 and 2011. In addition, the chitons associated with three macroalgae of the Ponta Verde coral reef were studied based on collections made over 12 years (from the summer of 1998 to the winter of 2009). Three replicates with an area of 25 cm2 were collected from each of the following species of macroalgal phytals: Amphiroa fragilissima (Rhodophyta), Caulerpa racemosa (Chlorophyta) and Dictyota cervicornis (Phaeophyta). A total of 715 individuals (110 juveniles and 605 adults) were identified, including Acanthochitona terezae Guerra, 1983, Ischnochiton striolatus (Gray, 1828) and Ischnoplax pectinata (Sowerby II, 1840). Acanthochitona terezae was found for the first time in the area. Ischnochiton striolatus was the most abundant species in the reef ecosystem and in association with macroalgae. The greatest number of individuals of all three polyplacophorans identified (adults and juveniles) was found on the phytal A. fragilissima.
DOI: 10.6084/m9.figshare.20037454.v1
title: Polyplacophora (Mollusca) from reef ecosystems and associations with macroalgae on the Coast of Alagoas, Northeastern Brazil

description: ABSTRACT Brazilian marine molluscs, especially Gastropoda and Bivalvia, are relatively well studied. However, information on the class Polyplacophora is more scarce, particularly on reef-dwelling forms. This study aimed to qualitatively and quantitatively analyze aspects of polyplacophorans from reef ecosystems and their associations with macroalgae on the coast of Maceió (state of Alagoas, Brazilian Northeast). The study area included five coral reefs at Ipioca, Ponta do Prego, Ponta do Meirim, Riacho Doce and Ponta Verde, as well as two sandstone reefs, located in Guaxuma and Sereia. The samples were obtained by snorkelling along the intertidal and subtidal reef zones to a depth of up to five meters during low tides, between 2009 and 2011. In addition, the chitons associated with three macroalgae of the Ponta Verde coral reef were studied based on collections made over 12 years (from the summer of 1998 to the winter of 2009). Three replicates with an area of 25 cm2 were collected from each of the following species of macroalgal phytals: Amphiroa fragilissima (Rhodophyta), Caulerpa racemosa (Chlorophyta) and Dictyota cervicornis (Phaeophyta). A total of 715 individuals (110 juveniles and 605 adults) were identified, including Acanthochitona terezae Guerra, 1983, Ischnochiton striolatus (Gray, 1828) and Ischnoplax pectinata (Sowerby II, 1840). Acanthochitona terezae was found for the first time in the area. Ischnochiton striolatus was the most abundant species in the reef ecosystem and in association with macroalgae. The greatest number of individuals of all three polyplacophorans identified (adults and juveniles) was found on the phytal A. fragilissima.
DOI: 10.6084/m9.figshare.20037456
title: The cuticular profile of the aristiform hair as a characteristic feature of Abrawayaomys (Rodentia: Cricetidae)

description: ABSTRACT The cuticle is the outermost of the three cellular layers of the mammalian hair. It comprises numerous keratinized scales, whose morphology, combined with other microscopic characteristics of the hair, confers characteristic signature traits to various different species. This study aimed to analyze whether the cuticular patterns of the aristiform hair had any signature implications for the two species of the genus Abrawayaomys Cunha & Cruz, 1979. We identified the cuticular profiles of A. ruschi and A. chebezi. Both species have similar hair pattern. The base of the hair shows "irregular waved" scales with smooth and continuous edges, and the apex showed "transversal waved" small-sized scales with continuous and ornamented edges. The middle portion of the hair exhibits different cuticular patterns on different sides of a single hair follicle: "transversal waved" on the dorsal side and "narrow losangled" on the ventral side. This distribution pattern of the cuticular scales is an unprecedented record for any mammal, and it is an important generic feature that allows the identification of single samples, such as those found in predators' gastrointestinal contents. The species in question are considered rare due to the restricted number of specimens deposited in scientific collections. Our findings may contribute to expanding the species' geographic range by making it possible to identify it in various situations. These results highlight the relevance of studies pertaining the identification of the micromorphology of the aristiform hair, which can be used as a tool to accurately identify rodents.
DOI: 10.6084/m9.figshare.20037456.v1
title: The cuticular profile of the aristiform hair as a characteristic feature of Abrawayaomys (Rodentia: Cricetidae)

description: ABSTRACT The cuticle is the outermost of the three cellular layers of the mammalian hair. It comprises numerous keratinized scales, whose morphology, combined with other microscopic characteristics of the hair, confers characteristic signature traits to various different species. This study aimed to analyze whether the cuticular patterns of the aristiform hair had any signature implications for the two species of the genus Abrawayaomys Cunha & Cruz, 1979. We identified the cuticular profiles of A. ruschi and A. chebezi. Both species have similar hair pattern. The base of the hair shows "irregular waved" scales with smooth and continuous edges, and the apex showed "transversal waved" small-sized scales with continuous and ornamented edges. The middle portion of the hair exhibits different cuticular patterns on different sides of a single hair follicle: "transversal waved" on the dorsal side and "narrow losangled" on the ventral side. This distribution pattern of the cuticular scales is an unprecedented record for any mammal, and it is an important generic feature that allows the identification of single samples, such as those found in predators' gastrointestinal contents. The species in question are considered rare due to the restricted number of specimens deposited in scientific collections. Our findings may contribute to expanding the species' geographic range by making it possible to identify it in various situations. These results highlight the relevance of studies pertaining the identification of the micromorphology of the aristiform hair, which can be used as a tool to accurately identify rodents.
DOI: 10.6084/m9.figshare.20037457
title: Taxonomic revision of two poorly known genera of Richardiidae (Diptera): Maerorichardia and Odontomerella

description: ABSTRACT Richardiidae are a family of Tephritoidea in which most genera are poorly known taxonomically, including some which were poorly described with limited or no illustrations. With the aim to decrease this taxonomic gap, herein we review two scarcely known monotypic genera: Odontomerella Hendel, 1912 and Maerorichardia Hennig, 1937, both known only from the holotypes of their type species. Maerorichardia is the only genus of Richardiidae with mid and hind tibiae thicker than their respective femora, and the wing with the anal lobe distinctly developed. Odontomerella can be distinguished from the others richardiids by the postcranium reduced and little wider ventrally, the compound eye well developed, occupying most of the head, with the gena and postcranium very reduced, and the face short, with the oral margin distinctly concave. The limits of both genera are revised and better supported with the addition of new diagnostic characters. Odontomera flavipleura Hennig, 1938 is transferred to Odontomerella. The types of the species are revised and illustrated.
DOI: 10.6084/m9.figshare.20037457.v1
title: Taxonomic revision of two poorly known genera of Richardiidae (Diptera): Maerorichardia and Odontomerella

description: ABSTRACT Richardiidae are a family of Tephritoidea in which most genera are poorly known taxonomically, including some which were poorly described with limited or no illustrations. With the aim to decrease this taxonomic gap, herein we review two scarcely known monotypic genera: Odontomerella Hendel, 1912 and Maerorichardia Hennig, 1937, both known only from the holotypes of their type species. Maerorichardia is the only genus of Richardiidae with mid and hind tibiae thicker than their respective femora, and the wing with the anal lobe distinctly developed. Odontomerella can be distinguished from the others richardiids by the postcranium reduced and little wider ventrally, the compound eye well developed, occupying most of the head, with the gena and postcranium very reduced, and the face short, with the oral margin distinctly concave. The limits of both genera are revised and better supported with the addition of new diagnostic characters. Odontomera flavipleura Hennig, 1938 is transferred to Odontomerella. The types of the species are revised and illustrated.
DOI: 10.6084/m9.figshare.20037459
title: The island rule in the Brazilian frog Phyllodytes luteolus (Anura: Hylidae): incipient gigantism?

description: ABSTRACT The island rule suggests that, when mainland animals are isolated on islands, large animals tend to become smaller, while small animals tend to become larger. A small frog in eastern Brazil, Phyllodytes luteolus (Wied-Neuwied, 1824), is widely distributed in association with bromeliads. At the end of the last glaciation, parts of the mainland became islands due to rising sea levels, thereby isolating frog populations on these islands. If the island rule holds, we predicted that frogs on islands would tend to be larger than frogs on the mainland. We compared sizes (weight and length) of 30 randomly selected male frogs from the mainland with 30 from an island in the state of Espírito Santo, Brazil. We also sampled population density on the island and mainland because concurrent with changing sizes, depending on the causal relationship, density may also change. As predicted, island frogs tended to be larger (both in snout-vent length and weight) and were much more abundant. While not specifically addressed in this study, the absence of predators and interspecific competitors may explain both of these trends.
DOI: 10.6084/m9.figshare.20037459.v1
title: The island rule in the Brazilian frog Phyllodytes luteolus (Anura: Hylidae): incipient gigantism?

description: ABSTRACT The island rule suggests that, when mainland animals are isolated on islands, large animals tend to become smaller, while small animals tend to become larger. A small frog in eastern Brazil, Phyllodytes luteolus (Wied-Neuwied, 1824), is widely distributed in association with bromeliads. At the end of the last glaciation, parts of the mainland became islands due to rising sea levels, thereby isolating frog populations on these islands. If the island rule holds, we predicted that frogs on islands would tend to be larger than frogs on the mainland. We compared sizes (weight and length) of 30 randomly selected male frogs from the mainland with 30 from an island in the state of Espírito Santo, Brazil. We also sampled population density on the island and mainland because concurrent with changing sizes, depending on the causal relationship, density may also change. As predicted, island frogs tended to be larger (both in snout-vent length and weight) and were much more abundant. While not specifically addressed in this study, the absence of predators and interspecific competitors may explain both of these trends.
DOI: 10.6084/m9.figshare.20037462
title: Different collecting methods reveal different ecological groups of centipedes (Chilopoda)

description: ABSTRACT Soil invertebrates are studied by a number of methods. Here we used zoological methods (soil sampling, pitfall trapping, litter sifting, and hand collecting) to sample centipede communities in four floodplain forests (Czech Republic, Europe) and compared the efficiency of these methods. Heat-extraction from soil samples was the most effective, followed by pitfall trapping. The centipedes found by us can be divided into five ecological groups: 1) larger, abundant lithobiomorphs, 2) larger, scarcer lithobiomorphs, 3) smaller, soil lithobiomorphs, 4) abundant geophilomorphs, and 5) scarcer geophilomorphs.
DOI: 10.6084/m9.figshare.20037462.v1
title: Different collecting methods reveal different ecological groups of centipedes (Chilopoda)

description: ABSTRACT Soil invertebrates are studied by a number of methods. Here we used zoological methods (soil sampling, pitfall trapping, litter sifting, and hand collecting) to sample centipede communities in four floodplain forests (Czech Republic, Europe) and compared the efficiency of these methods. Heat-extraction from soil samples was the most effective, followed by pitfall trapping. The centipedes found by us can be divided into five ecological groups: 1) larger, abundant lithobiomorphs, 2) larger, scarcer lithobiomorphs, 3) smaller, soil lithobiomorphs, 4) abundant geophilomorphs, and 5) scarcer geophilomorphs.
DOI: 10.6084/m9.figshare.20037468
title: Factors determining the structure of fish assemblages in an Amazonian river near to oil and gas exploration areas in the Amazon basin (Brazil): establishing the baseline for environmental evaluation

description: ABSTRACT Determining the significance of biotic and abiotic factors in the structuring of fish assemblages in freshwater environments is an important question in ecology, particularly in view of environmental changes caused by man. In this paper we sought to identify the factors responsible for the composition and abundance of fish species collected with gill nets in six locations near ports in forest clearance areas opened up for oil and natural gas exploration (Petrobras Pedro Moura Base) in the Urucu River, during drought and flood cycles. In all, 923 individuals from 23 families and 82 species were collected, totalling a biomass of 182,244 g. The most abundant species during the flood season were Bryconops alburnoides (Kner, 1858) and Dianema urostriatum (Miranda Ribeiro, 1912); in the drought season, the predominant species were Osteoglossum bicirrhosum (Cuvier, 1829) and Serrasalmus rhombeus (Linnaeus, 1766). The species with the greatest biomass during the flood season were Pellona castelnaeana (Valenciennes, 1847), S. rhombeus and Pellona flavipinis (Valenciennes, 1847). During the drought season, the predominant species was O. bicirrhosum. When both periods were analysed together, electrical conductivity, water transparency and dissolved oxygen were the most important factors. The species Hemisorubim platyrhynchos (Valenciennes, 1840), O. bicirrhosum, Chaetobranchus flavenscens Heckel, 1840, Geophagus proximus (Castelnau, 1855) were strongly related to high values of conductivity, pH and water current velocity during the drought season, as well as Serrasalmus altispinis Merckx, Jégu & Santos, 2000, Triportheus albus Cope, 1872, Triportheus angulatus (Spix & Agassiz, 1829) and Brycon melanopterus (Cope, 1872) that were associated with less depth and width in the drought season whereas P. castelnaeana, D. urostriatum, Rhytiodus argenteofuscus Kner, 1858 and Sorubim lima (Bloch & Schneider, 1801) were mainly associated with high transparency and dissolved oxygen during the flood season.
DOI: 10.6084/m9.figshare.20037466.v1
title: Determinants of capture-recapture success: an evaluation of trapping methods to estimate population and community parameters for Atlantic forest small mammals

description: ABSTRACT Efficiently obtaining high-quality data on animal populations and communities is paramount for ecological and conservation studies. In many instances these data come from live-trapping, the success of which depends on various factors, such as the interaction between the trap's mechanisms and the morphological or ecological characteristics of the animals, and weather conditions that can affect both trap efficiency and animal behavior. Integrative approaches that address the simultaneous effects of these factors on capture-recapture success are rare. Here we contribute to close this knowledge gap by focusing on a large capture-recapture dataset from three 2-ha grids monitored for approximately two years (totaling 55.000 traps-night) in the Morro Grande Forest Reserve, São Paulo, Brazil. The dataset contains data on 3608 captures of 1273 individuals from 24 species of Atlantic forest small mammals. We evaluated if mortality rates and the capture-recapture success of small mammals varied between two types of trap (Sherman and pitfall), and if the capture success of each type varied with age and sex of individuals, and with weather conditions. Our findings highlight that trap efficiency depends not only on the quantities considered (species, individuals or recaptures), but also on animal characteristics and weather conditions. Large pitfall traps should be used whenever the focus is on biodiversity and community parameters, since they captured more individuals and species. Studies focusing on demographic parameters require the combined use of pitfall and Sherman traps. While pitfall traps captured a larger number of individuals and a higher proportion of juveniles, Sherman traps provided higher recapture rates for most species.
DOI: 10.6084/m9.figshare.20037468.v1
title: Factors determining the structure of fish assemblages in an Amazonian river near to oil and gas exploration areas in the Amazon basin (Brazil): establishing the baseline for environmental evaluation

description: ABSTRACT Determining the significance of biotic and abiotic factors in the structuring of fish assemblages in freshwater environments is an important question in ecology, particularly in view of environmental changes caused by man. In this paper we sought to identify the factors responsible for the composition and abundance of fish species collected with gill nets in six locations near ports in forest clearance areas opened up for oil and natural gas exploration (Petrobras Pedro Moura Base) in the Urucu River, during drought and flood cycles. In all, 923 individuals from 23 families and 82 species were collected, totalling a biomass of 182,244 g. The most abundant species during the flood season were Bryconops alburnoides (Kner, 1858) and Dianema urostriatum (Miranda Ribeiro, 1912); in the drought season, the predominant species were Osteoglossum bicirrhosum (Cuvier, 1829) and Serrasalmus rhombeus (Linnaeus, 1766). The species with the greatest biomass during the flood season were Pellona castelnaeana (Valenciennes, 1847), S. rhombeus and Pellona flavipinis (Valenciennes, 1847). During the drought season, the predominant species was O. bicirrhosum. When both periods were analysed together, electrical conductivity, water transparency and dissolved oxygen were the most important factors. The species Hemisorubim platyrhynchos (Valenciennes, 1840), O. bicirrhosum, Chaetobranchus flavenscens Heckel, 1840, Geophagus proximus (Castelnau, 1855) were strongly related to high values of conductivity, pH and water current velocity during the drought season, as well as Serrasalmus altispinis Merckx, Jégu & Santos, 2000, Triportheus albus Cope, 1872, Triportheus angulatus (Spix & Agassiz, 1829) and Brycon melanopterus (Cope, 1872) that were associated with less depth and width in the drought season whereas P. castelnaeana, D. urostriatum, Rhytiodus argenteofuscus Kner, 1858 and Sorubim lima (Bloch & Schneider, 1801) were mainly associated with high transparency and dissolved oxygen during the flood season.
DOI: 10.6084/m9.figshare.20037466
title: Determinants of capture-recapture success: an evaluation of trapping methods to estimate population and community parameters for Atlantic forest small mammals

description: ABSTRACT Efficiently obtaining high-quality data on animal populations and communities is paramount for ecological and conservation studies. In many instances these data come from live-trapping, the success of which depends on various factors, such as the interaction between the trap's mechanisms and the morphological or ecological characteristics of the animals, and weather conditions that can affect both trap efficiency and animal behavior. Integrative approaches that address the simultaneous effects of these factors on capture-recapture success are rare. Here we contribute to close this knowledge gap by focusing on a large capture-recapture dataset from three 2-ha grids monitored for approximately two years (totaling 55.000 traps-night) in the Morro Grande Forest Reserve, São Paulo, Brazil. The dataset contains data on 3608 captures of 1273 individuals from 24 species of Atlantic forest small mammals. We evaluated if mortality rates and the capture-recapture success of small mammals varied between two types of trap (Sherman and pitfall), and if the capture success of each type varied with age and sex of individuals, and with weather conditions. Our findings highlight that trap efficiency depends not only on the quantities considered (species, individuals or recaptures), but also on animal characteristics and weather conditions. Large pitfall traps should be used whenever the focus is on biodiversity and community parameters, since they captured more individuals and species. Studies focusing on demographic parameters require the combined use of pitfall and Sherman traps. While pitfall traps captured a larger number of individuals and a higher proportion of juveniles, Sherman traps provided higher recapture rates for most species.