cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24988032.v1
title: Supplementary Material for: Incarcerated small bowel herniation in a stoma mimicking sigmoid end colostomy prolapse

description: Introduction: A stoma prolapse is easy to diagnose by visual examination, and it rarely incarcerates. Therefore, manual reduction is usually performed as soon as the diagnosis is made. In this report, we describe a case of stoma prolapse that could not be reduced manually and ruptured because an incarcerated parastomal hernia occurred in the stoma, mimicking stoma prolapse. Case presentation: A 66-year-old woman underwent total hysterectomy, bilateral salpingo-oophorectomy, pelvic and para-aortic lymphadenectomy, omentectomy, resection of dissemination, and low anterior resection with formation of a sigmoid end colostomy for endometrial cancer with infiltration of the rectum. Fourteen months after the initial operation, she presented with stoma prolapse and multiple episodes of vomiting. The prolapsed stoma was 20 cm in length, appeared swollen and edematous, and was somewhat firm. Although it looked viable, some of the mucosa was darkish red, indicating congestion. Therefore, the diagnosis was sigmoid end colostomy prolapse with an ischemic component. An attempt at manual reduction resulted in rupture, so an emergency laparotomy was performed. Intraoperatively, we found that the ileum was incarcerated in the aperture created where the colostomy had been formed. When the incarcerated ileum was released, the stoma prolapse could be reduced easily. The end colostomy was refashioned in the left upper quadrant of the abdomen. Conclusion: An incarcerated parastomal hernia can mimic stoma prolapse. If the findings differ from those of typical stoma prolapse, imaging should be performed to confirm whether another clinical entity is involved in the stoma prolapse.
DOI: 10.6084/m9.figshare.24998870
title: Supplementary Material for: Accumulation of carbamylation-derived products in aneurysmal aorta

description: Introduction: Carbamylation is a nonenzymatic post-translational modification of proteins characterized by the binding of isocyanic acid to amino groups of proteins, which leads to the alteration of their properties. An increase of serum carbamylation-derived products, including homocitrulline (HCit), has been shown to be associated with the development of cardiovascular diseases. 
Methods: HCit was quantified by LC-MS/MS within extracts of aneurysmal and control human aortas. A mouse model of aortic aneurysm (ApoE-/- mice perfused with angiotensin II and fed with sodium cyanate) was used to evaluate the role of carbamylation in aneurysm development.
Results: HCit quantification showed a greater heterogeneity of values in aneurysmal aortas in comparison with control ones. At the maximum diameter of dilation, HCit values were significantly higher (+94%, p&lt;0.05) compared with less dilated areas. No differences was observed according to aneurysm size or when comparing ruptured and unruptured aneurysms. No significant effect of carbamylation on aneurysm development was observed using the animal model.
Conclusions: These results evidenced the accumulation of HCit within aneurysmal aortas but do not allow to conclude about the exact participation of protein carbamylation in the development of human abdominal aortic aneurysms.
DOI: 10.6084/m9.figshare.24967941.v1
title: Supplementary Material for: HPA1-29w genotyping and the foundation for the platelet apheresis registry in Jiangsu province of China by MassARRAY spectrometry

description: Introduction: This study aimed to investigate the allele frequencies of the human platelet antigens HPA-1-29w system in Jiangsu (China) and establish the platelet apheresis registry in blood donors. Methods: HPA genotyping was performed using the MassARRAY iPLEX® platform. Allele and genotype frequencies were estimated by direct counting and tested for Hardy–Weinberg equilibrium. The transfusion mismatch probability was calculated for every HPA specificity. Results: The HPA allele frequencies in the Jiangsu Han population of HPA-1b, -2b, -3b, -4b, -5b, -6b, -11b, -15b, and -21b were 0.0055, 0.0530, 0.4116, 0.0015, 0.0155, 0.0162, 0.0003, 0.5317, and 0.0070, respectively, in which a heterozygote of HPA-11a/b was first detected in China. Only allele a was detected for HPA-7-10w、-12-14w、-16-20w and -22-29w quasi-systems. The highest mismatch rate of HPA genes in 1640 platelet donors was the HPA-15 system, followed by the HPA-3 system with a rate of 37.4% and 36.71%, respectively. Conclusion: China’s largest-scale platelet registry of HPA-1-29w has been explored. The MassARRAY platform may help to found the platelet apheresis registry which would be useful to provide matching platelets and lead to a more accurate, effective, and safe transfusion for patients with platelet therapy.
DOI: 10.6084/m9.figshare.24967941.v2
title: Supplementary Material for: HPA1-29w genotyping and the foundation for the platelet apheresis registry in Jiangsu province of China by MassARRAY spectrometry

description: Introduction: This study aimed to investigate the allele frequencies of the human platelet antigens HPA-1-29w system in Jiangsu (China) and establish the platelet apheresis registry in blood donors. Methods: HPA genotyping was performed using the MassARRAY iPLEX® platform. Allele and genotype frequencies were estimated by direct counting and tested for Hardy–Weinberg equilibrium. The transfusion mismatch probability was calculated for every HPA specificity. Results: The HPA allele frequencies in the Jiangsu Han population of HPA-1b, -2b, -3b, -4b, -5b, -6b, -11b, -15b, and -21b were 0.0055, 0.0530, 0.4116, 0.0015, 0.0155, 0.0162, 0.0003, 0.5317, and 0.0070, respectively, in which a heterozygote of HPA-11a/b was first detected in China. Only allele a was detected for HPA-7-10w、-12-14w、-16-20w and -22-29w quasi-systems. The highest mismatch rate of HPA genes in 1640 platelet donors was the HPA-15 system, followed by the HPA-3 system with a rate of 37.4% and 36.71%, respectively. Conclusion: China’s largest-scale platelet registry of HPA-1-29w has been explored. The MassARRAY platform may help to found the platelet apheresis registry which would be useful to provide matching platelets and lead to a more accurate, effective, and safe transfusion for patients with platelet therapy.
DOI: 10.34740/kaggle/ds/4358082
title: 🔎 Gaza Conflict: Macron's Stance, BBC Comments
DOI: 10.6084/m9.figshare.24967941.v3
title: Supplementary Material for: HPA1-29w genotyping and the foundation for the platelet apheresis registry in Jiangsu province of China by MassARRAY spectrometry

description: Introduction: This study aimed to investigate the allele frequencies of the human platelet antigens HPA-1-29w system in Jiangsu (China) and establish the platelet apheresis registry in blood donors. Methods: HPA genotyping was performed using the MassARRAY iPLEX® platform. Allele and genotype frequencies were estimated by direct counting and tested for Hardy–Weinberg equilibrium. The transfusion mismatch probability was calculated for every HPA specificity. Results: The HPA allele frequencies in the Jiangsu Han population of HPA-1b, -2b, -3b, -4b, -5b, -6b, -11b, -15b, and -21b were 0.0055, 0.0530, 0.4116, 0.0015, 0.0155, 0.0162, 0.0003, 0.5317, and 0.0070, respectively, in which a heterozygote of HPA-11a/b was first detected in China. Only allele a was detected for HPA-7-10w、-12-14w、-16-20w and -22-29w quasi-systems. The highest mismatch rate of HPA genes in 1640 platelet donors was the HPA-15 system, followed by the HPA-3 system with a rate of 37.4% and 36.71%, respectively. Conclusion: China’s largest-scale platelet registry of HPA-1-29w has been explored. The MassARRAY platform may help to found the platelet apheresis registry which would be useful to provide matching platelets and lead to a more accurate, effective, and safe transfusion for patients with platelet therapy.
DOI: 10.5281/zenodo.10559698
title: 1H NMR Binning Data of Commercial Honey Analysed by 400 and 700 MHz

description: Datasets (*.xlsx) contain the 1H NMR Binning data of commercial honey analysed using 400 MHz and 700 MHz NMR machine.
DOI: 10.6084/m9.figshare.24998723
title: Supplementary Material for: Blood eosinophil count and its determinants in a Chinese population-based cohort

description: Introduction: Blood eosinophil count has been shown markedly variable across different populations. However, its distribution in Chinese general population remains unclear. We aimed to investigate blood eosinophil count and its determinants in a Chinese general population.

Methods: In this population-based study, general citizens of Sichuan province in China were extracted from the China Pulmonary Health study. Data on demographics, personal and family history, living condition, lifestyle, spirometry and complete blood count test were obtained and analyzed. A stepwise multivariate binary logistic regression analysis was performed to identify determinants of high blood eosinophils (&gt;75th percentile).

Results: A total of 3310 participants were included, with a mean age (SD) of 47.0 (15.6) years. In total population, the median blood eosinophil count was 110.0 (IQR 67.2-192.9) cells/μL, lower than that in smokers (133.4 cells/μL, IQR 79.3-228.4) and patients with asthma (140.7 cells/μL, IQR 79.6-218.2) or post-bronchodilator airflow limitation (141.5 cells/μL, IQR 82.6-230.1), with a right-skewed distribution. Multivariate analyses revealed that oldness (aged ≥60 years) (OR 1.66, 95% CI 1.11-2.48), smoking ≥ 20 pack-years (OR 1.90, 95% CI 1.20-3.00), raising dog/cat (OR 1.72, 95% CI 1.17-2.52) and occupational exposure to dust, allergen and harmful gas (OR 1.58, 95% CI 1.15-2.15) were significantly associated with high blood eosinophils.

Conclusion: This study identifies a median blood eosinophil count of 110.0 cells/μL and determinants of high blood eosinophils in a Chinese general population, including oldness (aged ≥60 years), smoking ≥ 20 pack-years, raising dog/cat and occupational exposure to dust, allergen and harmful gas.
DOI: 10.5281/zenodo.10570482
title: VA_InverseOptimization

description: This folder contains the information required to reply to the experiment:

1. WEAP model.zip:



The WEAP file is the model to open on WEAP, and its respective backup file (v18 - Initial version) represents the model version used to initialize the experiment on each machine.

The backup file (v19 - Final version corregida) of the version that represents the synthetic model which serves to obtain the "observed data".


2. VMs_InformationRequired.zip:



The Python virtual environment ("sp" folder) that contains the necessary libraries to allow machines to connect to each other.

The MODFLOW-NWT executable file.
DOI: 10.5281/zenodo.10570483
title: VA_InverseOptimization

description: This folder contains the information required to reply to the experiment:

1. WEAP model.zip:



The WEAP file is the model to open on WEAP, and its respective backup file (v18 - Initial version) represents the model version used to initialize the experiment on each machine.

The backup file (v19 - Final version corregida) of the version that represents the synthetic model which serves to obtain the "observed data".


2. VMs_InformationRequired.zip:



The Python virtual environment ("sp" folder) that contains the necessary libraries to allow machines to connect to each other.

The MODFLOW-NWT executable file.
DOI: 10.6084/m9.figshare.25001810
title: Supplementary Material for: Excision and reconstruction of atypical chest dermatofibrosarcoma protuberans tumor: A case report and literature review

description: Dermatofibrosarcoma protuberans (DFSP) originated as keloid sarcoma, gaining its current designation in 1925. DFSP exhibits slow growth, categorizing it as a low to intermediate-grade malignant sarcoma. Initially presenting as a small, firm, irregular skin nodule, it undergoes sudden, rapid growth, forming a prominent mass. While locally aggressive, distant metastasis is rare. DFSP affects mainly the torso then proximal extremities. In this case study, we described a 57-year-old male individual who received a diagnosis of DFSP, an uncommon and locally aggressive tumor affecting soft tissues. The primary histological diagnosis relies on immunohistochemical stains, enabling the distinction between DFSP and other fibrous tumors. Diagnosing DFSP is challenging due to its similarity to other skin lesions. A multidisciplinary approach is vital for accurate diagnosis and management.
DOI: 10.6084/m9.figshare.25001810.v1
title: Supplementary Material for: Excision and reconstruction of atypical chest dermatofibrosarcoma protuberans tumor: A case report and literature review

description: Dermatofibrosarcoma protuberans (DFSP) originated as keloid sarcoma, gaining its current designation in 1925. DFSP exhibits slow growth, categorizing it as a low to intermediate-grade malignant sarcoma. Initially presenting as a small, firm, irregular skin nodule, it undergoes sudden, rapid growth, forming a prominent mass. While locally aggressive, distant metastasis is rare. DFSP affects mainly the torso then proximal extremities. In this case study, we described a 57-year-old male individual who received a diagnosis of DFSP, an uncommon and locally aggressive tumor affecting soft tissues. The primary histological diagnosis relies on immunohistochemical stains, enabling the distinction between DFSP and other fibrous tumors. Diagnosing DFSP is challenging due to its similarity to other skin lesions. A multidisciplinary approach is vital for accurate diagnosis and management.
DOI: 10.5281/zenodo.10412835
title: Artificial cellplex dataset to run workflow tests

description: This test dataset has been produced to make it as small as possible in order to make the workflow pass on CI.

- The CMO reads come from zenodo and have been sampled to 0.1 with seqtk.- The GEX reads come from SRR13948489 but have been subsetted to the cells selected in the above zenodo.The outputs (BAM + tsv and mtx) were obtained by running the test described here on https://usegalaxy.org.
DOI: 10.5281/zenodo.10412836
title: Artificial cellplex dataset to run workflow tests

description: This test dataset has been produced to make it as small as possible in order to make the workflow pass on CI.

- The CMO reads come from zenodo and have been sampled to 0.1 with seqtk.- The GEX reads come from SRR13948489 but have been subsetted to the cells selected in the above zenodo.
DOI: 10.5281/zenodo.10572348
title: Artificial cellplex dataset to run workflow tests

description: This test dataset has been produced to make it as small as possible in order to make the workflow pass on CI.

- The CMO reads come from zenodo and have been sampled to 0.1 with seqtk.- The GEX reads come from SRR13948489 but have been subsetted to the cells selected in the above zenodo.The outputs (BAM + tsv and mtx) were obtained by running the test described here on https://usegalaxy.org.
DOI: 10.25405/data.ncl.24199476.v1
title: Raw data files for research into detection of the big five carbapenemase genes

description: The data represents the raw data files associated with our publication article entitled - Multiplex detection of the big five carbapenemase genes using solid-phase recombinase polymerase amplification
DOI: 10.25405/data.ncl.24199476
title: Raw data files for research into detection of the big five carbapenemase genes

description: The data represents the raw data files associated with our publication article entitled - Multiplex detection of the big five carbapenemase genes using solid-phase recombinase polymerase amplification
DOI: 10.25405/data.ncl.24199476.v2
title: Raw data files for research into detection of the big five carbapenemase genes

description: The data represents the raw data files associated with our publication article entitled - Multiplex detection of the big five carbapenemase genes using solid-phase recombinase polymerase amplification
DOI: 10.7284/155523
title: Expendable Probe data collected during research cruise NA152 using a Sippican MK21 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155519
title: INS (Inertial Navigation System) data collected during research cruise NA152 using a Kongsberg Seatex MRU-5 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155524
title: INS (Inertial Navigation System) data collected during research cruise NA152 using a Kongsberg Seapath 330+ instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155520
title: Multibeam Echosounder data collected during research cruise NA152 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155521
title: Multibeam Echosounder data collected during research cruise NA152 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155522
title: Singlebeam Echosounder data collected during research cruise NA152 using a Knudsen 3260 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155525
title: SSV (Sound Speed Velocimeter) data collected during research cruise NA152 using a AML AML-3 RT instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157510
title: Expendable Probe data collected during research cruise NA153 using a Sippican MK21 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17043/stordalen-malhotra-2024-litter-1
title: Litter bag decomposition at Stordalen mire 2011 – 2013
DOI: 10.7284/157506
title: INS (Inertial Navigation System) data collected during research cruise NA153 using a Kongsberg Seatex MRU-5 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157511
title: INS (Inertial Navigation System) data collected during research cruise NA153 using a Kongsberg Seapath 330+ instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157507
title: Multibeam Echosounder data collected during research cruise NA153 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157508
title: Multibeam Echosounder data collected during research cruise NA153 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157509
title: Singlebeam Echosounder data collected during research cruise NA153 using a Knudsen 3260 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157512
title: SSV (Sound Speed Velocimeter) data collected during research cruise NA153 using a AML AML-3 RT instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156654
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP2311 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156658
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP2311 using a Furuno GP-170 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156657
title: Gyrocompass data collected during research cruise SP2311 using a Furuno Furuno SC-30 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156656
title: Meteorological Station data collected during research cruise SP2311 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156659
title: Singlebeam Echosounder data collected during research cruise SP2311 using a Knudsen 3260 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156655
title: Winch data collected during research cruise SP2311 using a Markey DEYSH-3 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156660
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP2312 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156664
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP2312 using a Furuno GP-170 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156663
title: Gyrocompass data collected during research cruise SP2312 using a Furuno Furuno SC-30 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156662
title: Meteorological Station data collected during research cruise SP2312 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156665
title: Singlebeam Echosounder data collected during research cruise SP2312 using a Knudsen 3260 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156661
title: Winch data collected during research cruise SP2312 using a Markey DEYSH-3 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156704
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP2320 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156708
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SP2320 using a SeaBird SBE-911+ instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156709
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP2320 using a Furuno GP-170 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156707
title: Gyrocompass data collected during research cruise SP2320 using a Furuno Furuno SC-30 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156706
title: Meteorological Station data collected during research cruise SP2320 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/156705
title: Winch data collected during research cruise SP2320 using a Markey DEYSH-3 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition