cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17861/7c670166-734e-4396-aa38-bbcac983cdf7
title: uSARA and AIRI reconstructions of selected ASKAP observations

description: This dataset consists of 79 sub-band and 3 full-band continuum images of selected public ASKAP observations covering several radio sources of scientific interest. The selected observations (SB8275-15, SB9351-12, and SB9442-35) were imaged via an automated and parallel framework for wide-field intensity radio interferometry imaging which encapsulates two imaging algorithms: uSARA and AIRI. We also provide reconstructions made with the WSClean imager, for comparison purposes. Our imaging results for the three selected fields, imaged with the three different imaging algorithms (uSARA, AIRI, and WSClean), are also presented in animated GIFs to show how the reconstructed emission changes over the full observing frequency band. All FITS files can be viewed through image-viewing software such as DS9 or Aladin. GIF files are widely accessible through standard image and video editing programs and can be viewed directly through Pure.
DOI: 10.5281/zenodo.7311062
title: Search Smart export

description: Search Smart export of academic database details.
DOI: 10.5281/zenodo.7311061
title: Search Smart export

description: Search Smart export of academic database details.
DOI: 10.25318/9810011401-eng
title: Individual Market Basket Measure poverty status by economic family characteristics of persons: Census metropolitan areas, tracted census agglomerations and census tracts

description: Individual poverty status using Market Basket Measure (MBM) by family characteristics, age, and gender for census metropolitan areas, tracted census agglomerations and census tracts.
DOI: 10.21985/n2-4kf5-cn20
title: Data for Chapter 4: Elucidation of the effects of genetic and functional context on genetic program performance and robustness
DOI: 10.25318/9810011401-fra
title: Situation de pauvreté des personnes d’après la Mesure du panier de consommation, selon les caractéristiques de la famille économique des personnes : Régions métropolitaines de recensement, agglomérations de recensement subdivisées en secteurs de recensement et secteurs de recensement

description: Situation de pauvreté des personnes d’après la mesure du panier de consommation (MPC), selon les caractéristiques de la famille, l'âge et le genre pour les régions métropolitaines de recensement, les agglomérations de recensement subdivisées en secteurs de recensement et les secteurs de recensement.
DOI: 10.5281/zenodo.7069066
title: Model and input files for Iyer & Ou, et al. 2022 (Ratcheting of climate pledges needed to limit peak global warming )

description: The GCAM model (GCAMv5.3 NDC) and input files used to conduct Iyer & Ou, et al. 2022 (Ratcheting of climate pledges needed to limit peak global warming ) The model needs to be compiled using third-party libraries (see https://jgcri.github.io/gcam-doc/gcam-build.html). Source code has been included in the GCAMv5.3_NDC/csv Default GCAM input files have been included in GCAMv5.3_NDC/input/gcamdata/xml Additional input files for NDC scenarios have been included in GCAMv5.3_NDC/input/NDC_Ratchet_policy A sample configuration_NDC_sample.xml has been included in GCAMv5.3_NDC/exe with detailed setup instruction
description: Code will be Open Access upon formal publication.
DOI: 10.5281/zenodo.7069063
title: GCAM output files for Iyer & Ou, et al. 2022 (Ratcheting of climate pledges needed to limit peak global warming )

description: Original GCAM output files for Iyer & Ou, et al. 2022 (Ratcheting of climate pledges needed to limit peak global warming) A "Naming Rule" file is included. More details and assumptions can be found in the original paper. GCAM documentation can be found at https://jgcri.github.io/gcam-doc/
description: Data will be Open Access upon formal publication.
DOI: 10.5281/zenodo.7069062
title: GCAM output files for Iyer & Ou, et al. 2022 (Ratcheting of climate pledges needed to limit peak global warming )

description: Original GCAM output files for Iyer & Ou, et al. 2022 (Ratcheting of climate pledges needed to limit peak global warming) A "Naming Rule" file is included. More details and assumptions can be found in the original paper. GCAM documentation can be found at https://jgcri.github.io/gcam-doc/
description: Data will be Open Access upon formal publication.
DOI: 10.6084/m9.figshare.21534210
title: vCA1 electrophysiology (Estrus, Diestrus, OVX)

description: The zip file contains raw data obtained from wireless vCA1 recordings in freely behaving animals. Control and MSEW mice were recorded during estrus, diestrus, and five days after ovariectomy. Animals were recorded in the home cage (HC) followed by the open field (OF) at each time point. Files require Neuroexplorer software for analysis. Data filtering and normalization are described in the methods section of the manuscript.
DOI: 10.6084/m9.figshare.21534210.v1
title: vCA1 electrophysiology (Estrus, Diestrus, OVX)

description: The zip file contains raw data obtained from wireless vCA1 recordings in freely behaving animals. Control and MSEW mice were recorded during estrus, diestrus, and five days after ovariectomy. Animals were recorded in the home cage (HC) followed by the open field (OF) at each time point. Files require Neuroexplorer software for analysis. Data filtering and normalization are described in the methods section of the manuscript.
DOI: 10.6084/m9.figshare.21406866.v7
title: raw data

description: Nothing
DOI: 10.6084/m9.figshare.21500179
title: Genome-wide identification of exon extension/shrinkage events induced by splice-site-creating mutations

description: Mutations that affect phenotypes have been identified primarily as those that directly alter amino acid sequences or disrupt splice sites. However, some mutations not located in functionally important sites can also affect phenotypes, such as splice-site-creating mutations (SCMs). To investigate how frequent exon extension/shrinkage events induced by SCMs occur in normal individuals, we used personal genome sequencing data and transcriptome data of the corresponding individuals and identified 371 exon extension/shrinkage events in normal individuals. This number was about three times higher than the number of pseudo-exon activation events identified in the previous study. The average numbers of exon extension and exon shrinkage events in each sample were 3.3 and 11.2, respectively. We also evaluated the impact of exon extension/shrinkage events on the resulting transcripts and their protein products and found that 40.2% of the identified events may have possible functional impacts by either generating premature termination codons in transcripts or affecting protein domains. Our results indicated that a certain fraction of SCMs identified in this study can be pathogenic mutations by creating novel splice sites.
DOI: 10.6084/m9.figshare.21500179.v1
title: Genome-wide identification of exon extension/shrinkage events induced by splice-site-creating mutations

description: Mutations that affect phenotypes have been identified primarily as those that directly alter amino acid sequences or disrupt splice sites. However, some mutations not located in functionally important sites can also affect phenotypes, such as splice-site-creating mutations (SCMs). To investigate how frequent exon extension/shrinkage events induced by SCMs occur in normal individuals, we used personal genome sequencing data and transcriptome data of the corresponding individuals and identified 371 exon extension/shrinkage events in normal individuals. This number was about three times higher than the number of pseudo-exon activation events identified in the previous study. The average numbers of exon extension and exon shrinkage events in each sample were 3.3 and 11.2, respectively. We also evaluated the impact of exon extension/shrinkage events on the resulting transcripts and their protein products and found that 40.2% of the identified events may have possible functional impacts by either generating premature termination codons in transcripts or affecting protein domains. Our results indicated that a certain fraction of SCMs identified in this study can be pathogenic mutations by creating novel splice sites.
DOI: 10.5281/zenodo.6985413
title: Begomovirus DNA-B Movement Protein and Nuclear Shuttle Protein Ref-Seq Datasets

description: Multiple Sequence Alignment of proteins encoded on begomovirus DNA-B (movement protein and nuclear shuttle protein; n=131). One isolate per species based on ICTV reference list.
DOI: 10.5281/zenodo.6985414
title: Begomovirus DNA-B Movement Protein and Nuclear Shuttle Protein Ref-Seq Datasets

description: Multiple Sequence Alignment of proteins encoded on begomovirus DNA-B (movement protein and nuclear shuttle protein; n=131). One isolate per species based on ICTV reference list.
DOI: 10.7910/dvn/tfxqjn
title: The Rural Household Multiple Indicator Survey (RHoMIS) data of 35,713 farm households in 32 countries

description: The Rural Household Multiple Indicator Survey (RHoMIS) is a standardized farm household survey approach which collects information on 753 variables covering household demographics, farm area, crops grown and their production, livestock holdings and their production, agricultural product use and variables underlying standard socio-economic and food security indicators like the Poverty Probability Index, the Household Food Insecurity Access Scale and dietary diversity. These variables are used to quantify more than 40 different aggregate indicators on farm household characteristics, welfare, productivity and economic performance. Between 2015 and 2021, the survey instrument has been applied in 32 countries in Central America, sub-Saharan Africa and Asia. The data presented here cover the raw data, the indicator calculation code and the resulting indicator values, and can be used to quantify on- and off-farm pathways to food security, diverse diets and reduced poverty of rural smallholder farm households.
DOI: 10.6084/m9.figshare.21534615
title: HER2 binding affinity with Mobocertinib

description: These are the trajectory and the parameter files from the MD simulation for HER2 with Mobocertinib bound. After 500 ns of MD simulation for three times, for each of the mutant markov modeling was applied and the most probable states from the markov modeling was used for the MMPBSA simulation. This trajectory included here were taken from the markov modeling and then used for the binding affinity and per residue decomposition analysis using MMPBSA.py module in amber.
DOI: 10.24403/jp.1243978
title: No. 1 - The three modes of appropriation - lessons of chinese practice für theorizing property / Cheng Jing, Carsten Herrmann-Pillath, Li Ling
DOI: 10.5281/zenodo.6537451
title: Accompanying data for "Non-cyanobacterial diazotrophs: Global diversity, distribution, ecophysiology, and activity in marine waters"

description: Data accompanying the manuscript "Non-cyanobacterial diazotrophs: Global diversity, distribution, ecophysiology, and activity in marine waters," submitted to FEMS Microbiology Reviews. Contents include: - A compilation of available marine water column qPCR/ddPCR nifH gene abundance data from published studies with metadata colocalized using the Simons Collaborative Marine Atlas Project (see NCDReview_SupplTable4.pdf for a description of variables): NCDReview_qPCR_database.xlsx - Nucleotide and amino acid sequences for the assembled nifH gene catalog (NCDReview_SupplTable1_caption.docx, NCDReview_TableS1_nt.fasta, NCDReview_TableS1_aa.fasta) - Table of nifH clusters and subclusters, with corresponding phyla and genera (NCDReview_Table1.xlsx)
DOI: 10.5281/zenodo.6537450
title: Accompanying data for "Non-cyanobacterial diazotrophs: Global diversity, distribution, ecophysiology, and activity in marine waters"

description: Data accompanying the manuscript "Non-cyanobacterial diazotrophs: Global diversity, distribution, ecophysiology, and activity in marine waters," submitted to FEMS Microbiology Reviews. Contents include: - A compilation of available marine water column qPCR/ddPCR nifH gene abundance data from published studies with metadata colocalized using the Simons Collaborative Marine Atlas Project (see NCDReview_SupplTable4.pdf for a description of variables): NCDReview_qPCR_database.xlsx - Nucleotide and amino acid sequences for the assembled nifH gene catalog (NCDReview_SupplTable1_caption.docx, NCDReview_TableS1_nt.fasta, NCDReview_TableS1_aa.fasta) - Table of nifH clusters and subclusters, with corresponding phyla and genera (NCDReview_Table1.xlsx)
DOI: 10.6073/pasta/86f87e98605851fbd4afcecb771c1eca
title: North Temperate Lakes LTER: Chemical Limnology of Primary Study Lakes: Major Ions 1981 - current

description: Parameters characterizing the major ions of the eleven primary lakes (Allequash, Big Muskellunge, Crystal, Sparkling, Trout, bog lakes 27-02 [Crystal Bog], and 12-15 [Trout Bog], Mendota, Monona, Wingra and Fish) are measured at one station in the deepest part of each lake at the top and bottom of the epilimnion, mid-thermocline, and top, middle, and bottom of the hypolimnion. These parameters include chloride, sulfate, calcium, magnesium, sodium, potassium, iron, manganese, and specific conductance (northern lakes only). Sampling Frequency: quarterly (winter, spring and fall mixis, and summer stratified periods) Number of sites: 11 Please consult NTL's website for information on experimental lake manipulations and the DNR's website for management activities
DOI: 10.6073/pasta/28b79cfa74da601acc321f867b230f26
title: North Temperate Lakes LTER: Crayfish Abundance 1981 - current

description: Crayfish data include crayfish catch in cylindrical minnow traps baited with beef liver and occasional occurrence in other gear used to sample fish. Traps are placed at fyke net locations in nine study lakes (Allequash, Big Muskellunge, Crystal, Sparkling, Trout, Mendota, Monona, Wingra and Fish). Crayfish traps have been eliminated as gear in the Madison area lakes (Mendota, Monona, Wingra, and Fish) after 2003. Individuals are identified to species and counted. In Trout and Sparkling Lake more detailed surveys have been conducted during the summer on an ad hoc basis to track distribution and abundance of the invading species Orconectes rusticus. In Sparkling lake Rusty Crayfish (Orconectes rusticus) was removed from 2001 to 2008. Catherine L Hein, Brian M Roth, Anthony R Ives, and M Jake Vander Zanden. Fish predation and trapping for rusty crayfish (Orconectes rusticus) control: a whole-lake experiment. Canadian Journal of Fisheries and Aquatic Sciences. 63(2): 383-393. https://doi.org/10.1139/f05-229. Additional data sets consist of pre-LTER sets (initiated in late June 1972) gathered by Capelli (Ph.D. dissertation) and Lorman (Ph.D. dissertation). Most of pre-LTER data is detailed distribution in Trout Lake, and community composition in other area lakes. Sampling Frequency: annually Number of sites: 9 Note that 2020 data does not exist due to insufficient sampling. Please consult NTL's website for information on experimental lake manipulations and the DNR's website for management activities
DOI: 10.21227/z4rt-1a80
title: Energy forecasting in Fuel Cell 

description: to predict the Energy consumption in Fuel Cell
DOI: 10.6084/m9.figshare.21534681
title: GSM1371836_MB_Sin3a.bigWig

description: C2C12 Sin3a ChipSeq
DOI: 10.6084/m9.figshare.21534681.v1
title: GSM1371836_MB_Sin3a.bigWig

description: C2C12 Sin3a ChipSeq
DOI: 10.6073/pasta/13eeffb520e71d3924a55dd8ba1f80e8
title: North Temperate Lakes LTER: Fish Lengths and Weights 1981 - current

description: Data are collected annually to enable us to track the fish assemblages of eleven primary lakes (Allequash, Big Muskellunge, Crystal, Sparkling, Trout, bog lakes 27-02 [Crystal Bog] and 12-15 [Trout Bog], Mendota, Monona, Wingra and Fish). Sampling on Lakes Monona, Wingra, and Fish started in 1995; sampling on other lakes started in 1981. Sampling is done at six littoral zone sites per lake with seine, minnow or crayfish traps, and fyke nets; a boat-mounted electrofishing system samples four littoral transects. Vertically hung gill nets are used to obtain two pelagic samples per lake from the deepest point. A trammel net samples across the thermocline at two sites per lake. In the bog lakes only fyke nets and minnow traps are deployed. Parameters measured include species-level identification and lengths for all fish caught, and weight and scale samples from a subset. Dominant species vary from lake to lake. Perch, rockbass, and bluegill are common, with walleye, large and smallmouth bass, northern pike and muskellunge as major piscivores. Cisco have been present in the pelagic waters of four lakes, and an exotic species, rainbow smelt, is present in two. The bog lakes contain mudminnows. The only sampling done in 2020 were a single gill-netting replicate in Sparkling, Crystal, and Trout lakes. Sampling in Fish Lake was suspended in 2021 due to significant lake level changes. Sampling Frequency: annually Number of sites: 11. Please consult NTL's website for information on experimental lake manipulations and the DNR's website for management activities
DOI: 10.5281/zenodo.7194971
title: Supplemental data for "Estimating the Jones polynomial for Ising anyons on noisy quantum computers"

description: This data supports "Estimating the Jones polynomial for Ising anyons on noisy quantum computers" by Chris N. Self, Sofyan Iblisdir, Gavin K. Brennen, and Konstantinos Meichanetzidis https://arxiv.org/abs/2210.11127 Related code can be found in the GitHub repository: (https://github.com/chris-n-self/Ising-anyons-Jones-polynomials-for-NISQ). The 'analysis' folder here can be dropped inside the code repository in order to view the data using the 'view...' notebooks. The experimental data folders 'ibmq_...' contain the individual sets of results and can be used to generate new zero-noise-extrapolation fits.
DOI: 10.5281/zenodo.7194970
title: Supplemental data for "Estimating the Jones polynomial for Ising anyons on noisy quantum computers"

description: This data supports "Estimating the Jones polynomial for Ising anyons on noisy quantum computers" by Chris N. Self, Sofyan Iblisdir, Gavin K. Brennen, and Konstantinos Meichanetzidis https://arxiv.org/abs/2210.11127 Related code can be found in the GitHub repository: (https://github.com/chris-n-self/Ising-anyons-Jones-polynomials-for-NISQ). The 'analysis' folder here can be dropped inside the code repository in order to view the data using the 'view...' notebooks. The experimental data folders 'ibmq_...' contain the individual sets of results and can be used to generate new zero-noise-extrapolation fits.
DOI: 10.6084/m9.figshare.21534723
title: analysied_section_uvh

description: This file contains hydrodynamic variable such as u, v, w, and water elevation, extracted from the model raw data. It is used for analysing the decomposition of the lateral flow.
DOI: 10.6084/m9.figshare.21534723.v1
title: analysied_section_uvh

description: This file contains hydrodynamic variable such as u, v, w, and water elevation, extracted from the model raw data. It is used for analysing the decomposition of the lateral flow.
DOI: 10.5281/zenodo.7311383
title: Stand structure and tree population dynamic attribute dataset of long abandoned strict forest reserves

description: We provide an integrated dataset of two consecutive forest inventories, both containing plot-level, and individual tree-level data. The first provides the descriptions and measuring units (or categories) of plot-level variables (Table 1). The plot level table contains 233 records (rows), one for each selected permanent plot of six strict forest reserves located in Hungary. This dataset is georeferenced and contains information on inventories and basic stand structure attributes (Table_1_Plots ESRI shape format). The individual tree-level datasets were acquired by the sampling procedure, detailed in section 2.2. Species, dendrometric attributes, relative crown position, health, and decay status were documented for each tree belonging to the samples. Table 2 provides the descriptions and measuring units (or categories) of tree-level datasets in detail. Furthermore, it provides a tree history classification based on the interpretation of tree status changes. According to a simple scheme of the life and dead history of a tree, it could be classified into four main phases: establishment/regeneration phase; developmental phase; death and gradual decay of the tree trunk; terminated in decomposed/disintegrated state. The main events along these phases are ingrowth regeneration; death of the tree (mortality); disaggregation and decomposition of deadwood. We classify each sampled tree individuals into tree history categories (events and phases, Table 3) that can provide population dynamic aspects at stand level by appropriate tree aggregation functions. Relational link can be set between the plot-level and tree-level datasets based on the unique identification code of the site and sampling plots.
DOI: 10.26300/6ghh-jc29
title: Supplementary data from "Improving Alternatives to Orthotopic Liver Transplantation by Multiomics Assessment"
DOI: 10.6084/m9.figshare.21534762
title: obssec_model_variables

description: It is the same as anasec_model_variables but for the observation transect
DOI: 10.6084/m9.figshare.21534762.v1
title: obssec_model_variables

description: It is the same as anasec_model_variables but for the observation transect
DOI: 10.6084/m9.figshare.21534765
title: Poziotinib binding affinity with HER2 WT and the mutants

description: These are the trajectory and the parameter files from the MD simulation for HER2 with Poziotinib bound. After 500 ns of MD simulation for three times, for each of the mutant markov modeling was applied and the most probable states from the markov modeling was used for the MMPBSA simulation. This trajectory included here were taken from the markov modeling and then used for the binding affinity and per residue decomposition analysis using MMPBSA.py module in amber.
DOI: 10.6084/m9.figshare.21456645.v1
title: Precise disease-state identification with healthy single-cell references - processed datasets and models

description: Processed datasets used for analyses benchmarking the use of control and atlas datasets as references for identification of disease-associated cell states.
DOI: 10.6084/m9.figshare.21534783
title: diagnostic_variables

description: These files contain the diagnostic output of the model, in which the diagnostic advection terms can be used to compare with the advection computed using velocities extracted from the model. It is also used to compute the flow due to advection.
DOI: 10.6084/m9.figshare.21534783.v1
title: diagnostic_variables

description: These files contain the diagnostic output of the model, in which the diagnostic advection terms can be used to compare with the advection computed using velocities extracted from the model. It is also used to compute the flow due to advection.