DOI: 10.5281/zenodo.3402456
title: Macaca mulatta structural and diffusion weighted MRI data

description: The AMU dataset includes structural and diffusion weighted MRI data from 4 <em>Macaca mulatta</em> monkeys. The data is provided both as a directory structure compressed as <code>all_the_data.zip</code>, and as individual files. The correspondence between the directory structure and the individual files is contained in the file <code>tree.json</code>. The bash command <code>source unflatten.sh</code> can be used to convert the individual files into the original directory structure. <strong>Sample Description</strong> Sample size: 4 Age distribution: 7-8 years Weight distribution: 7.5-12.5 kgs Sex distribution: 3 male, 1 female Click here for the full sample description (.csv download) <strong>Scan Procedures and Parameters</strong> <em>Ethics approval:</em> obtained at local Ethics Committee <em>Animal care and housing:</em> At Institut de Neurosciences de La Timone <em>Any applicable training:</em> N/A <strong>Scanning preparations</strong> <em>Anesthesia procedures:</em> Isoflurane <em>Time between anesthesia and scanning:</em> None- anesthesia was performed and monitored during scanning. <em>Head fixation:</em> Kopf frame and ear bars <em>Position in scanner and procedure used:</em> Sphinx position. <strong>Fiducial marker placed on right side.</strong> <em>Contrast agent:</em> None <strong>During scanning</strong> <em>Physiological monitoring:</em> Heart rate, respiration <em>Additional procedures:</em> Ventilation <strong>Scan sequences</strong> Scanner type: Siemens Prisma 3T Head coil: Body transmit array, 11cm loop receiving coil Optimization of the magnetic field prior to data acquisition: Automatic B0 shimming procedures from Siemens Diffusion-weighted: Diffusion SE-EPI sequence Voxel resolution: 1 x 1 x 1 mm TE: 87.6ms TR: 7520ms 64b1000 6b300 5b0 Two repetitions with reversed phase encoding direction Structural: T1 MPRAGE sequence Voxel resolution: 0.8 x 0.8 x 0.8 mm TE: 2.04ms TR: 2900ms TI: 1000ms T2 3D SPACE sequence Voxel resolution: 0.8 x 0.8 x 0.8mm TE: 561ms TR: 3200ms QSM 3D GRE sequence Voxel resolution: 0.93 x 0.93 x 1mm TE: 2.7-42ms TR: 45ms <strong>Personnel</strong> Thomas Brochier<sup>1</sup> Pascal Belin<sup>1</sup> Frédéric Chavanne<sup>1</sup> Lionel Velly<sup>1</sup> Clémentine Bodin<sup>1</sup> Luc Renaud<sup>1,2</sup> Marc Martin<sup>1,2</sup> Laurence Boes<sup>1,2</sup> Julien Sein<sup>1</sup> Bruno Nazarian<sup>1</sup> Jean-Luc Anton<sup>1</sup> <sup>1</sup>Institut de Neurosciences de la Timone (INT), UMR7289 CNRS & Aix-Marseille Université, Marseille, France<br> <sup>2</sup>Centre d’Exploration Fonctionnelle et de Formation en Primatologie (CE2F-PRIM), UMS5737 CNRS & Aix-Marseille Université, Marseille, France <strong>Acknowledgements</strong> We gratefully acknowledge the support of French France-Life Imaging (FLI) and Infrastructures en Biologie Santé et Agronomie (IBISA) <strong>Funding</strong> Project PRIMAVOICE, PI Belin, French Agence Nationale de la Recherche Detailed information can be found at http://fcon_1000.projects.nitrc.org/indi/PRIME/amu.html. <strong>Citation</strong> Brochier, T., Belin, P., Chavanne, F., Velly, L., Bodin, C., Renaud, L., Martin, M., Boes, L., Sein, J., Nazarian, B., & Anton, J.-L. (2019). Macaca mulatta structural and diffusion weighted MRI data [Data set]. Zenodo. https://doi.org/10.5281/ZENODO.3402456. Milham, M. P., Ai, L., Koo, B., Xu, T., Amiez, C., Balezeau, F., … Schroeder, C. E. (2018). An Open Resource for Non-human Primate Imaging. Neuron, 100(1), 61–74.e2. https://doi.org/10.1016/j.neuron.2018.08.039.