cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.mq2p20k/3
title: qPCR_Data

description: qPCR_Data.csv – qPCR results from the Pressure Experiment for each individual qPCR replicate.

Fields:

pore_size – the filter pore size in µm. 

pressure – the user-input pressure threshold value in -psi.

filter_replicate – the filter replicate number for each combination of pressure and pore size.

qPCR_replicate - the qPCR replicate number for each filter sample.

SQ – The calculated starting quantity (DNA copies/reaction) from each qPCR replicate.

Cq – The Cq value resulting from each qPCR replicate.
DOI: 10.5061/dryad.p3g8r54/1
title: BMC_dataset_ParasiteTransmission
DOI: 10.5061/dryad.s1k47j4/1
title: Mitochondrial DNA FASTA file

description: FASTA file containing 1166 dog mtDNA genomes used in this study
DOI: 10.5061/dryad.s1k47j4/2
title: NEXUS tree

description: Maximum likelihood tree (RAxML) of 1166 dogs mtDNA genomes used in this study
DOI: 10.5061/dryad.s1k47j4/3
title: Excel sheet

description: Publication source of the 1166 mtDNA genomes used in this study
DOI: 10.5061/dryad.s1k47j4/4
title: Plink (bed) file

description: Contains genotype for dogs 54 dogs
DOI: 10.5061/dryad.s1k47j4/5
title: Plink file (bim)

description: Contains genotype for 54 dogs
DOI: 10.5061/dryad.s1k47j4/6
title: Plink file (fam)

description: Contains genotype for 54 dogs
DOI: 10.5061/dryad.s1k47j4/7
title: NJ tree in Figure 2b

description: NJ tree in Figure 2b (see Table S2 for more info)
DOI: 10.5061/dryad.s1k47j4/8
title: Nexus file

description: Nexus file used for producing Figure S12 (MKV model in MrBayes)
DOI: 10.5061/dryad.s1k47j4/9
title: NEXUS tree

description: Bayesian tree in Figure S12 (see Table S2 for more info)
DOI: 10.5061/dryad.sh546k0/1
title: Hydraulic measurements of Argyranthemum species

description: Hydraulic measurements performed with cavitron for the five Argyranthemum species studied. The file contain the P50, P12, P88 and Kmax values of each branch used, with the individual and species average.
DOI: 10.5061/dryad.sh546k0/2
title: Hydraulic measurements of daisy herbaceous species

description: Hydraulic measurements performed with cavitron for the five daisy herbaceous species studied. The file contain the P50, P12, P88 and Kmax values of each branch used, with the individual and species average.
DOI: 10.5061/dryad.sh546k0/3
title: Stem anatomical measurements

description: Measurements of stem anatomical characters of woody and herbaceous daisies. For each feature were measured at least 2 individuals per species, except for Cladanthus mixtus, for which we have measured 9 individuals for proportion of lignified area over stem area 4 individuals for thickness of intervessel pit membrane
DOI: 10.17632/jmd55hndd4.1
title: Data for: Conventional MRI Scan and DTI Imaging Show More Severe Brain Injury in Neonates with Hypoxic-Ischemic Encephalopathy and Seizures
DOI: 10.5061/dryad.1m2vn52/1
title: Pacific spp rcp26

description: This zipped file contains all the projections for Pacific species for RCP 2.6. Each file contains 21st century projection data for a single species and one of two RCPs (representative concentration pathway). The files are stored as ‘.RData’ files and each contains a single data frame to be used with R computing software. Each row of data consists of projected catch-per-unit-effort within a specific latitude-longitude referenced grid cell, for one of five time periods (2007-2020, 2021-2040, 2041-2060, 2061-2080, 2081-2100). Please refer to the ‘READ ME’ file that is included with the zip file for more details.
DOI: 10.5061/dryad.1m2vn52/2
title: Pacific spp rcp85

description: This zipped file contains all the projections for Pacific species for RCP 8.5. Each file contains 21st century projection data for a single species and one of two RCPs (representative concentration pathway). The files are stored as ‘.RData’ files and each contains a single data frame to be used with R computing software. Each row of data consists of projected catch-per-unit-effort within a specific latitude-longitude referenced grid cell, for one of five time periods (2007-2020, 2021-2040, 2041-2060, 2061-2080, 2081-2100). Please refer to the ‘READ ME’ file that is included with the zip file for more details.
DOI: 10.5061/dryad.1m2vn52/3
title: Atlantic spp rcp26_A-L

description: This zipped file contains all the projections for Atlantic species for RCP 2.6, which have genera names beginning with the letters 'A' through 'L'. Each file contains 21st century projection data for a single species and one of two RCPs (representative concentration pathway). The files are stored as ‘.RData’ files and each contains a single data frame to be used with R computing software. Each row of data consists of projected catch-per-unit-effort within a specific latitude-longitude referenced grid cell, for one of five time periods (2007-2020, 2021-2040, 2041-2060, 2061-2080, 2081-2100). Please refer to the ‘READ ME’ file that is included with the zip file for more details.
DOI: 10.5061/dryad.1m2vn52/4
title: Atlantic spp rcp26_M-Z

description: This zipped file contains all the projections for Atlantic species for RCP 2.6, which have genera names beginning with the letters 'M' through 'Z'. Each file contains 21st century projection data for a single species and one of two RCPs (representative concentration pathway). The files are stored as ‘.RData’ files and each contains a single data frame to be used with R computing software. Each row of data consists of projected catch-per-unit-effort within a specific latitude-longitude referenced grid cell, for one of five time periods (2007-2020, 2021-2040, 2041-2060, 2061-2080, 2081-2100). Please refer to the ‘READ ME’ file that is included with the zip file for more details.
DOI: 10.5061/dryad.3gr233c/6
title: Differential expression results and qvalue for multiple testing correction

description: Tab-delimited text file containing the results of the differential gene expression test (limma-voom results) between pigmented and depigmented Virginia opossums. To account for multiple hypothesis testing the false discovery rate (FDR) method was used as implemented in the qvalue package in R. Genes were considered differentially expressed if they had a qvalue &lt; 0.1. In this file the genes are order by qvalue from lower to higher.
DOI: 10.5061/dryad.46vm261/4
title: Bitcoin UTXOs value analysis

description: This is a jupyter notebook used to extract the total number of Bitcoins that are protected by revealed public keys using the BlockSci tool. We run this notebook on a r4.2xlarge EC2 Amazon instance using the AMI (ami-0650807b) that BlockSci offers. BlockSci and the blockchain data are already provisioned there. For more details on using BlockSci or in case you wish to use this in another environment, please follow the instructions found on their github page: https://github.com/citp/BlockSci
DOI: 10.5061/dryad.4bp82rc/3
title: CharacterData

description: Character matrix
DOI: 10.5061/dryad.6524f.1/1.1
title: amplicon_alignments_nt

description: amplicon alignments in nucleotide space
DOI: 10.5061/dryad.6524f.1/11.1
title: PARTITIONFINDER_INPUT_CONFIG_partition_finder_pep

description: config file for PartitionFinder (peptide space)
DOI: 10.5061/dryad.6524f.1/12.1
title: POMO_INPUT_Teph3_878genes_cutInds100_cutGenes200

description: input file for POMO analysis
DOI: 10.5061/dryad.6524f.1/13.1
title: SVDQUARTETS_INPUT_Teph3_878genes_cutInds100_cutGenes200_svdq_noLog

description: input file for SVDquartets analysis
DOI: 10.5061/dryad.6524f.1/14.1
title: Tables_S1-S5

description: Supplemental tables S1-S5
DOI: 10.5061/dryad.6524f.1/2.1
title: amplicon_alignments_pep

description: amplicon alignments in peptide space
DOI: 10.5061/dryad.6524f.1/5.1
title: EXABAYES_INPUT_CONFIG_config

description: config file for EXABAYES analysis
DOI: 10.5061/dryad.6524f.1/6.1
title: FigureS1-S6

description: Supplemental figures S1-S6
DOI: 10.5061/dryad.6524f.1/8.1
title: Full_HiMAP_part02_input

description: full input for HiMAP part02
DOI: 10.5061/dryad.693kt2j/1
title: nonlocal rheology data from annular shear
DOI: 10.5061/dryad.6t4f27g/1
title: Dataset for parsimony analysis

description: Nexus file containing dataset used for the parsimony analysis (equal-weight and implied-weight)
DOI: 10.5061/dryad.78s7g21/1
title: Dataset_1

description: Occurrence records used in the analyses
DOI: 10.5061/dryad.78s7g21/2
title: Dataset_2

description: R pipeline used to calculate climatic niche hypervolumes
DOI: 10.5061/dryad.78s7g21/3
title: Dataset_3

description: R pipeline used to built Maxent climatic niche models
DOI: 10.5061/dryad.7cr0c76/27
title: Binary suitability prediction for California Heuchera MRCA: Last interglacial, narrow-buffer models

description: This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the last interglacial (120k-140k years ago), using narrow-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/28
title: Binary suitability prediction for Mitella MRCA: Holocene climatic optimum, wide-buffer models

description: This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Holocene climatic optimum (6k years ago), using wide-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/29
title: Binary suitability prediction for California Heuchera MRCA: Holocene climatic optimum, narrow-buffer modelsData from: Geographic range dynamics drove ancient hybridization in a lineage of angiosperms.

description: This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Holocene climatic optimum (6k years ago), using wide-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/30
title: Binary suitability prediction for Mitella MRCA: Holocene climatic optimum, wide-buffer models

description: This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Last Glacial Maximum (22k years ago), using wide-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/31
title: Binary suitability prediction for California Heuchera MRCA: Last Glacial Maximum, wide-buffer models

description: This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Last Glacial Maximum (22k years ago), using wide-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/32
title: Binary suitability prediction for Mitella MRCA: Last interglacial, wide-buffer models

description: This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the last interglacial (120k-140k years ago), using wide-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/33
title: Binary suitability prediction for California Heuchera MRCA: Last interglacial, wide-buffer models

description: This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the last interglacial (120k-140k years ago), using wide-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/34
title: Binary suitability prediction for Mitella MRCA: Holocene climatic optimum, distance-buffer models

description: This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Holocene climatic optimum (6k years ago), using distance-buffer models and binary maps.
DOI: 10.5061/dryad.8004pp3/1
title: Myers Parrott et al 3-2018 ROB

description: Risk of bias and study characteristics of nutrition related research contained in the Academy of Nutrition and Dietetics Evidence Analysis Library, the USDA Nutrition Evidence Library, and select AHRQ nutrition-related systematic reviews. Data in SPSS 24 file and csv with data dictionary in Excel.
DOI: 10.5061/dryad.8jf67k4/1
title: Data file for the missed opportunities for HIV diagnosis study
DOI: 10.5061/dryad.9hn3dg7/1
title: Data DRYAD females and males

description: Traits used in analyses performed in Lapiedra et al. 2018
DOI: 10.5061/dryad.b8m8g7s/6
title: Kinesis & standard errors (by species)

description: Table of feeding kinesis averages and standard errors for each SPECIES analyzed in this study.
DOI: 10.5061/dryad.fm8007c/1
title: Selection on floral attractiveness in Collaea
DOI: 10.5061/dryad.g7907/1
title: Data

description: The data file includes the original data of Figures. The file can be accessed by origin edit software.
DOI: 10.5061/dryad.gj651/2
title: Informatics resource citation counts (2001)

description: The number of 'awareness', 'usage' and total citations for informatics resource publications up to the year 2001.
DOI: 10.5061/dryad.gj651/3
title: Informatics resource citation counts (2002)

description: The number of 'awareness', 'usage' and total citations for informatics resource publications up to the year 2002.
DOI: 10.5061/dryad.gj651/4
title: Informatics resource citation counts (2003)

description: The number of 'awareness', 'usage' and total citations for informatics resource publications up to the year 2003.
DOI: 10.5061/dryad.gj651/5
title: Informatics resource citation counts (2004)

description: The number of 'awareness', 'usage' and total citations for informatics resource publications up to the year 2004.
DOI: 10.5061/dryad.gj651/6
title: Informatics resource citation counts (2005)

description: The number of 'awareness', 'usage' and total citations for informatics resource publications up to the year 2005.
DOI: 10.5061/dryad.gj651/7
title: Informatics resource citation counts (2006)

description: The number of 'awareness', 'usage' and total citations for informatics resource publications up to the year 2006.
DOI: 10.5061/dryad.gj651/8
title: Informatics resource citation counts (2007)

description: The number of 'awareness', 'usage' and total citations for informatics resource publications up to the year 2007.
DOI: 10.5061/dryad.gj651/9
title: Informatics resource citation counts (2008)

description: The number of 'awareness', 'usage' and total citations for informatics resource publications up to the year 2008.
DOI: 10.5061/dryad.h706tv8/1
title: Vigilance in jatai

description: The file contains seven sheets. The first three contain data on the left-right ratios for guards in groups of two, three and four. The next two sheets contain data on the effect of group size and deviation from an even ratio on the vigilance, or 'range of rotation', for individual guards and the group as a whole. The final two sheets contain data on a bioassay where a dummy robber bee was introduced to one and two guards.
DOI: 10.5061/dryad.k1g46v2/1
title: 3D model of the head shield of Phymolepis cuifengshanensis

description: 3D model of the head shield of Phymolepis cuifengshanensis (IVPP V4425.2).
DOI: 10.5061/dryad.k1g46v2/2
title: 3D model of the trunk shield of Phymolepis cuifengshanensis

description: 3D model of the trunk shield of Phymolepis cuifengshanensis (IVPP V4425.2).
DOI: 10.5061/dryad.k1g46v2/3
title: Image stack of Phymolepis cuifengshanensis

description: Image stack of Phymolepis cuifengshanensis (IVPP V4425.2) for virtual restoration.
DOI: 10.5061/dryad.k1g46v2/4
title: 3D model of the head and trunk shields of Phymolepis cuifengshanensis

description: 3D model of the head and trunk shields of Phymolepis cuifengshanensis (IVPP V4425.2).
DOI: 10.5061/dryad.pd44k8r/1
title: Time Series Clinical Data for patients with BCLC stage B Hepatocellular carcinoma

description: This database contain three independent electronic forms, which includes the time-series clinical data and survival outcome of patient with BCLC stage B hepatocellular carcinoma, with an time interval of three months. The derivation cohort includes 979 patients, the internal validation cohort includes 627 patients, and the multicentric validation cohort includes 414 patients. All the categorical variables were annotated.
DOI: 10.5061/dryad.pd44k8r/2
title: Strategy in Construction of Survival Path of HCC patients manually

description: This picture illustrate how we construct the survival path system of patients using time-series data manually.
DOI: 10.5061/dryad.pd612qp/1
title: WOLVERINE DATA

description: The "WOLVERINE.Rdata" file contains the Rdata necessary to run the wolverines males and females empirical example at the original grid cell size (2*2kms) with a Bernoulli model. The README.R file contains the R script and data description necessary to run the JAGS models.
DOI: 10.5061/dryad.1m2vn52/5
title: Atlantic spp rcp85_A-L

description: This zipped file contains all the projections for Atlantic species for RCP 8.5, which have genera names beginning with the letters 'A' through 'L'. Each file contains 21st century projection data for a single species and one of two RCPs (representative concentration pathway). The files are stored as ‘.RData’ files and each contains a single data frame to be used with R computing software. Each row of data consists of projected catch-per-unit-effort within a specific latitude-longitude referenced grid cell, for one of five time periods (2007-2020, 2021-2040, 2041-2060, 2061-2080, 2081-2100). Please refer to the ‘READ ME’ file that is included with the zip file for more details.
DOI: 10.5061/dryad.1m2vn52/6
title: Atlantic spp rcp85_M-Z

description: This zipped file contains all the projections for Atlantic species for RCP 8.5, which have genera names beginning with the letters 'M' through 'Z'. Each file contains 21st century projection data for a single species and one of two RCPs (representative concentration pathway). The files are stored as ‘.RData’ files and each contains a single data frame to be used with R computing software. Each row of data consists of projected catch-per-unit-effort within a specific latitude-longitude referenced grid cell, for one of five time periods (2007-2020, 2021-2040, 2041-2060, 2061-2080, 2081-2100). Please refer to the ‘READ ME’ file that is included with the zip file for more details.
DOI: 10.5061/dryad.4bp82rc/4
title: BootstrapValues

description: contains bootstrap data for each ordination axis
DOI: 10.5061/dryad.6524f.1/10.1
title: PARTITIONFINDER_INPUT_CONFIG_partition_finder_nt

description: config file for PartitionFinder (nucleotide space)
DOI: 10.5061/dryad.6524f.1/15.1
title: Teph3_878genes_cutInds100_cutGenes200_Peptides

description: concatenated alignment (peptide space)
DOI: 10.5061/dryad.6524f.1/16.1
title: Teph3_878genes_cutInds100_cutGenes200

description: concatenated alignment (nucleotide space)
DOI: 10.5061/dryad.6524f.1/3.1
title: ASTRAL_INPUT_all_raxml_genetrees

description: input trees for ASTRAL analysis
DOI: 10.5061/dryad.6524f.1/4.1
title: ASTRAL_INPUT_CONFIG_spp_indsRmvd

description: config file for ASTRAL analysis
DOI: 10.5061/dryad.6524f.1/7.1
title: Full_HiMAP_part01_input

description: full input for HiMAP part01
DOI: 10.5061/dryad.6524f.1/9.1
title: OrthoMCL_input

description: full input for OrthoMCL
DOI: 10.5061/dryad.6t4f27g/2
title: Dataset for Bayesian Inference analysis

description: Nexus file containing dataset used for the Bayesian Inference analysis
DOI: 10.5061/dryad.7cr0c76/35
title: Binary suitability prediction for California Heuchera MRCA: Holocene climatic optimum, distance-buffer models

description: This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Holocene climatic optimum (6k years ago), using distance-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/36
title: Binary suitability prediction for Mitella MRCA: Last Glacial Maximum, distance-buffer models

description: This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Last Glacial Maximum (22k years ago), using distance-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/37
title: Binary suitability prediction for California Heuchera MRCA: Last Glacial Maximum, distance-buffer models

description: This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Last Glacial Maximum (22k years ago), using distance-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/38
title: Binary suitability prediction for Mitella MRCA: Last interglacial, distance-buffer models

description: This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the last interglacial (120k-140k years ago), using distance-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/39
title: Binary suitability prediction for California Heuchera MRCA: Last interglacial, distance-buffer models

description: This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the last interglacial (120k-140k years ago), using distance-buffer models and binary maps.
DOI: 10.5061/dryad.7cr0c76/40
title: Binned-probabilities suitability prediction for Mitella MRCA: Holocene climatic optimum, narrow-buffer models

description: This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Holocene climatic optimum (6k years ago), using narrow-buffer models and normalized binned-probabilities maps.
DOI: 10.5061/dryad.7cr0c76/41
title: Binned-probabilities suitability prediction for California Heuchera MRCA: Holocene climatic optimum, narrow-buffer models

description: This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Holocene climatic optimum (6k years ago), using narrow-buffer models and normalized binned-probabilities maps.
DOI: 10.5061/dryad.7cr0c76/42
title: Binned-probabilities suitability prediction for Mitella MRCA: Last Glacial Maximum, narrow-buffer models

description: This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Last Glacial Maximum (22k years ago), using narrow-buffer models and normalized binned-probabilities maps.
DOI: 10.5061/dryad.7n3df16/1
title: SI_Archive_S1

description: File with 13,959 expressed genes after HTSeq
(mnat_only_expressed_genes.txt; Format: plain text)
DOI: 10.5061/dryad.7n3df16/2
title: SI_Archive_S2

description: All Primers used for qRT-PCR
(Primers.txt; Format: plain text)
Transcriptome contigs used to find primers
(Contigs.fa; Format: fasta)
Expression Results of the qRT-PCR
(qRT-PCR.xlsx; Format: Excel-File)
DOI: 10.5061/dryad.7n3df16/3
title: SI_Archive_S3

description: M. natalensis sequence identifiers for genes identified in Table S3 and respective results of the
search against the Pfam database, release 30
(mnat_te_def_GOI_Pfam30.txt; Format: plain text)
Sequence identifiers for genes identified in Dataset S10 of B. germanica, Z. nevadensis, C. secundus and M. natalensis with respective results of the search against the Pfam database, release 30.
(all_AGO1_hits.fasta.hmmscanPfam30.hits_per_sequence; Format: plain text)
(all_AGO2_hits.fasta.hmmscanPfam30.hits_per_sequence; Format: plain text)
(all_AGO3_hits.fasta.hmmscanPfam30.hits_per_sequence; Format: plain text)
(all_piwi_aub_hits.fasta.hmmscanPfam30.hits_per_sequence; Format: plain text)
DOI: 10.5061/dryad.7n3df16/4
title: SI_Archive_S4

description: Multiple Sequence Alignment of all CO1 sequences (M. natalensis and M. bellicosus)
(co1_m_bell_m_nat.aligned.fas; FASTA format)
Distance Matrix (Kimura corrected)
(aligned.distmat; Format: plain text)
DOI: 10.5061/dryad.7n3df16/5
title: SI_Archive_S5

description: Complete raw read counts after HTSeq
(raw_counts.csv; Format: csv)
Complete normalized raw read counts after DESeq2
(normalized_counts_deseq2.csv; Format: csv)