cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26196941.v1
title: Genetic deletion of HVEM in a leukemia B cell line promotes a preferential increase of PD-1<sup>-</sup> stem cell-like T cells over PD-1<sup>+</sup> T cells curbing tumor progression.

description: <b>Introduction:</b><b> </b>A high frequency of mutations affecting the gene encoding Herpes Virus Entry Mediator (HVEM, TNFRSF14) is a common clinical finding in a wide variety of human tumors, including those of hematological origin.<b>Methods:</b><b> </b>We have addressed how HVEM expression on A20 leukemia cells influences tumor survival and its involvement in the modulation of the anti-tumor immune responses in a parental into F1 mouse tumor model of hybrid resistance by knocking-out HVEM expression. HVEM WT or HVEM KO leukemia cells were then injected intravenously into semiallogeneic F1 recipients and the extent of tumor dissemination was evaluated.<b>Results:</b><b> </b>The loss of HVEM expression on A20 leukemia cells led to a significant increase of lymphoid and myeloid tumor cell infiltration curbing tumor progression. NK cells and to a lesser extent NKT cells and monocytes were the predominant innate populations contributing to the global increase of immune infiltrates in HVEM KO tumors compared to that present in HVEM KO tumors. In the overall increase of the adaptive T cell immune infiltrates, the stem cell-like PD-1<sup>-</sup> T cells progenitors and the effector T cell populations derived from them were more prominently present than terminally differentiated PD-1<sup>+</sup> T cells.<b>Conclusions:</b><b> </b>These results suggest that the PD-1<sup>-</sup> T cell subpopulation is likely to be a more relevant contributor to tumor rejection than the PD-1<sup>+</sup> T cell subpopulation. These findings highlight the role of co-inhibitory signals delivered by HVEM upon engagement of BTLA on T cells and NK cells, placing HVEM/BTLA interaction in the spotlight as a novel immune checkpoint for the reinforcement of the anti-tumor responses in malignancies of hematopoietic origin.
DOI: 10.6084/m9.figshare.27118785.v2
title: Hemilarynx 3D vocal fold surface data

description: Contains the following data of four hemilarynges (24 experiments each):the 3D reconstructed medial vocal fold surface in the form of 3D coordinates of the sewn-in marker points, plus the software DxPlay for quick visulisation. An explanation on how to use the data can be found in the ".docx" file in the folder "medial surface data".3D reconstructed superior vocal fold surface from the reconstructed laser points. The 3D data can be found in the ".mat" file and is saved in the matrix "data3D". Each matrix has the size " 3 (<i>x/y/z</i>) x <i>number of laser dots</i> x <i>number of frames</i>". subglottal pressure signal and audio signal<br>
DOI: 10.6084/m9.figshare.27147678.v3
title: Labelled dataset for FDD in different building types: auditorium, hospital, and large-scale office

description: The primary objective of this research is to develop extensive real operational datasets from three distinct building types—a large-scale office, an auditorium, and a hospital. These buildings are representative of typical urban environments, thereby enhancing the potential for transferability and generalization of the developed FDD methods to similar facilities.
DOI: 10.6084/m9.figshare.28926977.v1
title: LAI_AGRL_PAST_RNGB_Calibration.xlsx

description: 用于模型校准的 LAI 数据。
DOI: 10.6084/m9.figshare.5677750.v1
title: Movielens DataSet

description: Movielens is a movie recommendation dataset widely used for benchmarking process. 385There are nearly 100,000 hard ratings on 19 different types of movies (Action, Comedy 386and so on).
DOI: 10.17632/54258xr4vz
title: REITs and S&P 500

description: We use weekly data from 10th October 2001 to 10th April 2019. Choice of the sample period is constrained on data availability for REIT data. The data are acquired from the Datastream, S&P 500 index is used to depict the stock market trend, the average of the S&P real estate sector index for the large, median and small firms (trustees) (REIT) are adopted to describe the overall real estate market process. After that, we calculate the weekly stock price return and REIT returns as , where are proxied by the weekly S&P 500 index and REIT, and represent the returns series. 917 observations are obtained.
DOI: 10.17632/8yzmk4dd7p
title: Ballistocardiography sleep dataset

description: Tha dataset contains ballistocardiography signals.

The BCG sensor dataset is obtained from twenty tested individuals. The data collection started when each idnividual lied in the bed and stopped after waking up therefore each dataset contains BCG data of sleeping persons. We used piezoceramic BCG sensors made by Univesity of Hradec Králové, Czech Republic. Four sensors placed under the mattress were used with sampling frequency 330 Hz. Measurement took place in laboratory at University of Ostrava, Czech republic. The data was then processed, the file X.pickle includes the signals after preprocessing using the Cartan Curvature and the Euclidean arc length. The file y.pickle has the class labels, which are the ID of signal holders.
DOI: 10.6084/m9.figshare.21224993.v2
title: Final Questionnaire on the Knowledge, Attitudes and Practices of Healthcare Professionals on Environmental Sustainability in Southern Africa

description: The final questionnaire of 24 questionnaire items with excellent content validity.
DOI: 10.6084/m9.figshare.28823390.v1
title: Bonn Roof Geometry Dataset

description: This dataset consists of annotated high-resolution aerial imagery of roof shapes/geometries in Bonn, Germany, in the Ultralytics YOLO instance segmentation dataset format. Aerial imagery was sourced from OpenAerialMap, specifically from the Maxar Open Data Program. Roof shape labels and building outlines were sourced from OpenStreetMap. Images and labels are split into training, validation, and test sets, meant for future machine learning models to be trained upon, for both building segmentation and roof shape/geometry classification.The dataset is intended for applications such as informing studies on solar capacity estimation, urban morphology, 3D modeling, risk assessments, and other related fields. There are seven roof shape types: gabled, flat, skillion, hipped, gambrel, half-hipped, pyramidal, and mansard. Note: The data is in a .zip due to file upload limits. Please find a more detailed dataset description in the README.md
DOI: 10.6084/m9.figshare.28925858.v1
title: Inferred genomes of 6,375 hybrids

description: Genomic prediction for indica hybrid rice.
DOI: 10.17632/4mhyn84c3d
title: Data for: Palygorskite@Co3O4 nanocomposites as efficient peroxidase mimics for colorimetric detection of H2O2 and ascorbic acid

description: Data for the paper
DOI: 10.17632/gxgj4kmsvz
title: Queries to identify climate change research that takes an engineering approach

description: This dataset was created as part of work conducted for the NSF Engineering Research Visioning Alliance's inaugural Visioning Event, entitled "The Role of Engineering in Addressing Climate Change".

The dataset is composed of <ol><li>four text (.txt) files, each containing a single query used to identify research relevant to climate change; and</li>
<li>three comma-separated values (.csv) files including information about how engineering research was defined.</li></ol>The goal of this work was to conduct bibliometric analyses aimed at better understanding the role engineering plays in climate change research. To do so, the set of documents returned from the climate change queries was crossed with the set of documents returned from the engineering query.

Files 01 through 04 each contain a single Scopus query that aims to capture either general climate change research (01) or specific topics of interest within climate change research (02-04). These are queries that could be run using the scopus.com advanced document search feature.

Given engineering is a broad field, keyword-based queries were not an efficient way to capture all relevant articles. Instead, three complementary classification schemes were used to capture this research. The following files summarize which parts of the classification schemes were mostly engineering-focused. An effort was made to keep this publication set maximally inclusive, such that it also includes some wider applied research subfields.

File 05a contains the All Science Journal Classification (ASJC) classes that were identified as being engineering for the purpose of this project. The ASJC is a journal-level classification, which means that all articles from a given journal are classified in the same subject area(s). A complete list of ASJC codes can be found <a href = "https://service.elsevier.com/app/answers/detail/a_id/15181/supporthub/scopus/" target="_blank">here</a>.

File 05b refers to Science-Metrix (SM) subfields identified as being engineering. The SM classification is also made at the journal-level, but articles from multidisciplinary journals such as Science or Nature are reclassified at the article level by a machine learning model (<a href = "https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0251493" target="_blank">Read the article here</a>), allowing us to capture more articles than using ASJC alone.

File 05c refers to the SciVal Topics that were included in the engineering publication set. Topics are collections of documents that share a common intellectual interest, as identified through their direct citation patterns. For a high-level description of SciVal Topics, see <a href = "https://www.elsevier.com/solutions/scival/features/topic-prominence-in-science" target="_blank">this page</a>. A detailed description of the methodology used to create Topics is also available in <a href = "https://onlinelibrary.wiley.com/doi/abs/10.1002/asi.22748" target="_blank">this article</a>.
DOI: 10.6084/m9.figshare.25634172.v1
title: Websites and app stores of electricity retailers (.wacz format)

description: Websites scraped by browsertrix-crawler.
DOI: 10.6084/m9.figshare.27674208.v1
title: GeneSeek-Neogen PorcineSNP80 BeadChip

description: The Wuzhishan pig breed exhibits three different coat color phenotypes (white, black, and black-back/white-belly). The coat color variation is worth studying. The 61 white, 96 black-back-white-belly, and 58 black Wuzhishan pigs were used to conduct a genome-wide association analysis. 97 genome-wide significant SNPs on chromosome 8 are related to coat colour.RAPGEF2, PDGFRA and KIT genes were identified as candidate genes for coat color variation by haplotype-sharing analysis and Gene ontology analysis. SNPs genotyping and mRNA expression analysis further confirmed RAPGEF2 and PDGFRA as potential candidate genes. KIT was confirmed as a potential candidate gene for white coat color by duplication and splice mutation detection. Our study may also shed light on the complex genetic background of coat colour variation in animals.
DOI: 10.6084/m9.figshare.28302761.v1
title: Supplementary Material for: Large scale population screening for BRCA1 and BRCA2 Ashkenazi founder mutations: perspectives of professionals providing oncogenetic consultations

description: Introduction: In March 2020, a nationwide population carrier screening for BRCA1/2 pathogenic variants among Ashkenazi Jewish women was initiated in Israel. We aimed to assess views regarding the program among professionals who provide oncogenetic counseling for detected carriers.
Methods: An online survey was distributed to clinical geneticists and genetic counselors. 
Results: The participants’ impression was that most carriers did not comprehend the implications of a positive result when deciding to take the test. Some carriers, in retrospect, regretted taking it. Some had a known mutation carrier in the family, and some had a family history that justified a broader test (and so should not have been tested through the screening program). Eight survey participants (29%) reported they were initially against the screening program, but half of them are currently in favor of it. Most participants are unsatisfied with the way the screening is conducted and suggested various improvements. Emotional distress of carriers, as assessed by participants, was higher for those detected by the screening program, compared to those tested after oncogenetic counseling. No association was found between the age, profession and prior experience of participants and their responses.
Conclusions: While the general attitude towards the screening program is positive, most professionals feel the need to improve the current screening program by defining exclusion criteria, providing comprehensive pretest information and adding other BRCA1/2 founder mutations, as well as expanding the screening to include ethnicities other than Ashkenazi Jews.
DOI: 10.6084/m9.figshare.28904600.v1
title: Data and Analysis for "Diagnosing habitat degradation of submerged plants in urban lakes: an integrated analysis of underwater light limitation, lake optics, and DOM chemo-diversity"

description: Diagnosing habitat degradation of submerged plants in urban lakes: an integrated analysis of underwater light limitation, lake optics, and DOM chemo-diversity
DOI: 10.17632/jd5zvrwb68
title: preschool child

description: Data on hyperactivity behavior and allergic disease in preschool children
DOI: 10.17632/rxdzsb85b8
title: Data for: Thermal Properties of Spark Plasma -sintered Polylactide/Graphene Composites.
DOI: 10.6084/m9.figshare.1250147.v1
title: CAJA OIT

description: CAJA DE OIT MERCURIO
DOI: 10.6084/m9.figshare.16691575.v1
title: Geographical Characterisation of British Urban Form and Function using the Spatial Signatures Framework

description: Spatial signatures characterise space based on form and function in a way designed to understand urban environments. This data product, part of the Urban Grammar project, contains a typology of spatial signatures in Great Britain. Each type has a distinct character capturing what the place looks like (form) and how it is used (function). <br>The data product contains bespoke Signature geometry with signature type, summary of input variables per each geometry and per each type, interpolation of signature types to OA and LSOA geometry and short pen portraits for the typology, shorthand descriptions of the characteristics of each signature type. <br>The interactive map showing the typology is available at https://urbangrammarai.xyz/great-britain/. More details about the project can be found at the project website https://urbangrammarai.xyz.
DOI: 10.6084/m9.figshare.28130648.v1
title: Model Weights

description: Model Weights
DOI: 10.6084/m9.figshare.5669740.v1
title: Fields in organization studies: relational approaches?

description: Abstract: This paper analyzes how different approaches of organizational analysis use the notion of ‘field’. The philosophical grounds and proposals that motivated the usage of this concept in the social sciences, associated to a specific relational approach illustrated by the sociological approach of Bourdieu, are taken as a reference. Identifying the genesis and paying particular attention to the configuration of scientific concepts in this approach, theoretical tools of sociological institutionalism in organizational analysis and the strategic action field approach are discussed. The paper concludes that overcoming limitations commonly associated to neoinstitutionalism involves reconfiguring its conceptual tools. A broader and more flexible concept of field, intrinsically articulated with conceptions of action and power, is considered to be particularly relevant.
DOI: 10.17632/cthvcyxgsd
title: Peer to Peer Lending Bibliometric

description: Scopus database peer to peer lending
DOI: 10.6084/m9.figshare.12287288.v1
title: MSCs and meshes for Hernia - qPCR data.txt

description: Gene expression of cells infiltrated in the surgical meshes at 1 week and 1 month after surgical mesh implantation was analyzed by quantitative Real Time PCR (qPCR). qPCR was performed with commercial gene expression assays (Life Technologies, Thermo Fisher Scientific Inc.), using TaqMan Fast Advance Master Mix (Life Technologies, Thermo Fisher Scientific Inc.), in accordance with the protocol provided by the manufacturer. The amplification of cDNAs was performed in a QuantStudio 3 System (Applied Biosystems, Thermo Fisher Scientific) and the qPCR products were quantified by fluorescent method using the 2<sup>-ΔCt</sup> expression. Duplicates of all samples were analyzed separately and normalized using HRPT1 as a reference gene.
DOI: 10.6084/m9.figshare.1483518.v1
title: Near infrared spectroscopy facilitates rapid identification of both young and mature Amazonian tree species

description: This study was developed to assess the potencial of the Near Infrared (FT-NIR) Spectroscopy to discrimination Amazon tree species. The species used in the study belong to the Burseraceae, genus Protium and Crepidospermum. The botanical material used was from herbarium specimens collected in Ducke Reserve from January to March 2013, and herbarium specimens that were collected from trees tagged at permanent plots belonging the BDFFP project over the past 35 years. The herbarium specimens correspond to different ontogenetic stages: seedlings, juveniles and adults. The spectral readings are expressed by the values of absorbance between the wavenumbers 4000-10000 (cm-1) in the near infrared.
DOI: 10.6084/m9.figshare.16550964.v4
title: 4-HNE And GSH Lung rats that exposed cigarette smoke.

description: This is an original data from in vivo exsperimental, measure the molecular consentration at the lung rat that exposed to cigarrete smoke
DOI: 10.6084/m9.figshare.20518008.v1
title: A Long-Read Genome Assembly of a Native Mite in China Pyemotes Zhonghuajia Yu, Zhang & He (Prostigmata: Pyemotidae) Item

description: genome annotation
DOI: 10.6084/m9.figshare.22567195.v1
title: KI_2022_Klocke_et_al_SO_kidney_urine_cells.rds

description: Acute kidney injury (AKI) is a major health issue, the outcome of which depends primarily on damage and reparative processes of tubular epithelial cells. Mechanisms underlying AKI remain incompletely understood, specific therapies are lacking and monitoring the course of AKI in clinical routine is confined to measuring urine output and plasma levels of filtration markers. Here we demonstrate feasibility and potential of a novel approach to assess the cellular and molecular dynamics of AKI by establishing a robust urine-to-single cell RNA sequencing (scRNAseq) pipeline for excreted kidney cells via flow cytometry sorting. We analyzed 42,608 single cell transcriptomes of 40 urine samples from 32 patients with AKI and compared our data with reference material from human AKI post-mortem biopsies and published mouse data. We demonstrate that tubular epithelial cells transcriptomes mirror kidney pathology and reflect distinct injury and repair processes, including oxidative stress, inflammation, and tissue rearrangement. We also describe an AKI-specific abundant urinary excretion of adaptive progenitor-like cells. Thus, single cell transcriptomics of kidney cells excreted in urine provides noninvasive, unprecedented insight into cellular processes underlying AKI, thereby opening novel opportunities for target identification, AKI sub-categorization, and monitoring of natural disease course and interventions.
DOI: 10.6084/m9.figshare.25513255.v1
title: Interviews about PrEP in Portuguese (BR)

description: This file contains 21 interviews that are part of the study "Perception and Barriers to access Pre-exposure Prophylaxis for HIV/AIDS (PrEP) in the Brazilian Amazon: a qualitative study." In this study, perceptions and challenges related to access to PrEP for HIV/AIDS in the Brazilian Amazon region are explored through a qualitative approach. The interviews provide valuable insights into participants' experiences and perspectives regarding PrEP, contributing to a more comprehensive understanding of the factors influencing its implementation and effectiveness in the region
DOI: 10.6084/m9.figshare.27678792.v1
title: Raw data files

description: Transcriptome analysis of AoNmd5 in nematode-trapping fungus Arthrobotrys oligospora
DOI: 10.6084/m9.figshare.7586153.v2
title: Nuclear envelope impairment is facilitated by the herpes simplex virus 1 Us3 kinase

description: Nuclear pores elarge in cells infected with herpes simplex virus 1 (HSV-1). Capsids, which are assembled in the nucleus, may gain access to the cytosol through impared nuclear pores in addition to bdudding at the inner nuclear membrane. In the absence of the HSV-1 Us3 kinase, nuclear membranes are produced in excess and impairement of nuclear pores is reduced in number and size.<br>
DOI: 10.17632/95cmh2ftwk
title: National burnout survey: BICDIS

description: Burnout in Irish consultant doctors 2019
DOI: 10.17632/vcsyd7ns8f
title: Dataset - An integrative multiparametric approach stratifies distinct phenotypes of blast phase chronic myelomonocytic leukemia with differential maturation status and drug sensitivity profiles

description: Approximately 30% of chronic myelomonocytic leukemia patients undergo transformation to a chemo-refractory blastic phase (BP-CMML). Seeking novel therapeutic approaches we profiled blast transcriptomes from 42 BP-CMMLs, observing extensive transcriptional heterogeneity and poor alignment to current AML classifications. BP-CMMLs displayed distinctive transcriptomic profiles, including enrichment for quiescence and variability in drug response signatures. Integrating clinical, immunophenotype and transcriptome parameters, RandomForest unsupervised clustering distinguished immature and mature subtypes characterized by differential expression of transcriptional modules, oncogenes, apoptotic regulators and patterns of surface marker expression. Subtypes differed in predicted response to AML drugs, validated ex vivo in primary samples. Iteratively refined stratification resolved a classification structure comprising five subtypes along a maturation spectrum, predictive of response to novel agents including consistent patterns for RTK, CDK, MTOR and MAPK inhibitors. Finally, we generated a clinically-applicable decision tree to stratify BP-CMML with high specificity and sensitivity, and potentially guide personalized drug selection for improved outcomes.

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# Dataset description: #
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Data included within this data repository is to be used as input for figure reproduction or further exploration.
This dataset includes the following higher order folders:
 - Clinical: includes clinical data for the LAML TCGA cohort. Other clinical data were not shared due to data protection of patients' privacy. Please consult us if requiring this data.
 - Genotype: includes tabular data of genotypes for the collated cohorts, including binary mutation matrix and whole cohorts mutation data.
 - Immunophenotype: includes tabular data with mean fluorescent intensity (MFI) computed for each sample against various markers.
 - Oncoprint: includes oncoprint input data.
 - RandomForest: includes RF input data, model and clustering results.
 - Resources: includes RNAseq annotation file, gene metadata and collection of curated gene pathways.
 - RNASeq: includes results from downstream analysis of bulk RNAseq data.
DOI: 10.6084/m9.figshare.14174597.v1
title: Sea level rise impact on intertidal shoals

description: The Delft3D (v 6.02.13.7545M) modeling configurations used to investigate the impact of sea level rise on the morphological evolution of intertidal shoals. Attached also is the Wadden Sea data (bathymetry and sediment composition).<br>
DOI: 10.6084/m9.figshare.22565212.v5
title: Table S1: Heat-stress Related Human Metadata

description: Meta-information data on human gene expression data, including SRA accession numbers, experimental conditions, and other information collected from Gene Expression Omnibus (GEO).