cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/j6jpmnc98y
title: Recall of neutral words

description: The goal of the present study was to investigate whether exposing individuals with MDD to negative cues during the encoding stage would lead to deeper cognitive processing and improved memory retention of subsequent information. We hypothesized that in the MDD group, exposure to the negative prime cue would result in better recall of the subsequent word list compared to exposure to the positive prime cue. Furthermore, we predicted that the impact of the emotional prime cue on memory recall would be more pronounced when presented during the encoding stage compared to the retrieval stage. For the encoding condition, in the MDD group we found a significant difference indicating better word recalling for the negative compared to the positive video valance condition. In the HC group there was no significant difference between the two video valence conditions. For the retrieval condition, the results revealed no video valence X group interaction. Consistent with assumptions, individuals with MDD, but not HCs, showed enhanced word recall after exposure to negative, compared to positive, emotional stimuli during encoding. Notably, this effect was not observed when the emotional video was presented during the retrieval stage
DOI: 10.17632/ksx46yhz79
title: Data of Manuscripts of European Journal of Integrative Medicine

description: Raw Data of Safety and effect of a new artificial saliva containing Zingiber officinale and Cuminum cyminum on stimulating saliva secretion: in vitro, in vivo and preliminary clinical study
DOI: 10.17632/35tbrd38dt
title: Sustainability, Business Models in Italian Wine firms

description: Analysis of Business Models of Italian Wine firms in Italy, with particular emphasis on their Business Models
DOI: 10.17632/8hr2nfzk57
title: Data for: The relationship between neutrophil-lymphocyte ratio and onset of lactation among postpartum women: A prospective observational cohort study

description: Background: Delayed onset of lactation is a key factor in the low rate of exclusive breast-feeding in 6 months after caesarean section. The mechanism of delayed onset of lactation is not clear. Milk production depends largely on mitochondrial adenosine triphosphate synthesis, and the neutrophil-lymphocyte ratio is closely related to mitochondrial deoxyribonucleic acid copy number and adenosine triphosphate production. Presently, it is unclear whether a difference in the neutrophil-lymphocyte ratio exists between those undergoing vaginal delivery and those undergoing caesarean delivery and, if so, whether the difference correlates to the time of onset of lactation. Objectives: To identify whether the neutrophil-lymphocyte ratio at 24 hours after delivery is different between mothers delivering by caesarean section and those giving birth vaginally and whether the neutrophil-lymphocyte ratio is related to the delayed onset of lactation. Design: The study adopted a prospective cohort study design. Settings: Maternity units of an Obstetrics & Gynecology Hospital. Participants: 327 mother-infant pairs who met inclusion/exclusion criteria and were followed up to the time of onset of lactation. Methods: Mother-infant pairs were allocated to the vaginal birth group or the caesarean section group according to birth method. The neutrophil-lymphocyte ratio was calculated as the absolute value of neutrophils divided by the absolute value of lymphocytes based on full blood counts. Before delivery, full blood counts were obtained from medical records. After delivery, blood samples were drawn 24 hours postpartum, and blood cells were classified and counted. The onset of lactation was confirmed by the maternal perception of breast fullness. The neutrophil-lymphocyte ratio and its relationship with lactation onset were analyzed by multivariable regression. Results: The neutrophil-lymphocyte ratios of both groups were elevated after delivery. Based on the covariance analysis, after adjusting for baseline full blood counts before delivery, the neutrophil-lymphocyte ratio in the caesarean group was higher than the ratio in the vaginal group after delivery (p = .000). In addition, after adjustment for confounding factors, multivariable regression analyses showed that an increased neutrophil-lymphocyte ratio was correlated with delayed onset of lactation (95% confidence interval 0.285-1.646). Conclusions: The neutrophil-lymphocyte ratio in the caesarean section group was higher than that in the vaginal delivery group and was related to a delayed onset of lactation. Given the decreased mitochondrial copy number in the elevated neutrophil-lymphocyte ratio and therefore the associated reduction in adenosine triphosphate synthesis, these findings may elucidate the mechanism for delayed onset of lactation in caesarean section births.
DOI: 10.17632/r85v44bh2m
title: Multi-material additive manufacturing with lightweight closed-cell foam-filled lattice structures for enhanced mechanical and functional properties 

description: Multi-material additive manufacturing of closed-cell foam-filled lattice structures is done using a hybrid FFF and foam-filling system. The data shows the compressive behaviour of foam-filled lattices for different compression levels and is compared with empty and equivalent weight lattices by varying unit cell size. Quasi-static compression testing is done at a strain rate of 5mm/min to acquire the hysteresis behaviour of the lattice structures. This cyclic testing is done for 21 cycles to obtain a stable compression cycle. 1st and 21st cycles have been taken to evaluate stiffness, specific energy dissipation and specific damping capacity of the designed lattices. The stiffness is evaluated by taking the slope of the best-fitted line at the start of the compression cycle. Specific energy dissipation is calculated by dividing hysteresis area over the individual weight of each of the designed lattices. Specific damping capacity is calculated by dividing the hysteresis area over the area under the loading curve. All three properties were found to be enhanced with foam filling.
DOI: 10.17632/dmw5jg3j7t
title: PHP script for querying DataCite API

description: (A simple script for querying DataCite's dataset records API) This is a dummy dataset to test the ORCID auto-update mechanism. If successful, the dataset will appear on my ORCID record here: https://orcid.org/0000-0002-9016-8258
DOI: 10.17632/c8pw7cmfmv
title: Data for: Nomogram Model for Predicting Risk of Postoperative Delirium in Parkinson's Patients over 50 years old After Deep Brain Stimulation Surgery

description: This is a data set on the risk of delirium in Parkinson's patients over 50 years old after DBS
DOI: 10.25378/janelia.5648317.v1
title: Ring attractor dynamics in the Drosophila central brain: processed data

description: Physiological data
DOI: 10.6084/m9.figshare.22547104.v2
title: Data from An Evaluation of the Association Between Participant Sex and Perceptions of Child Marriage Among Syrian Refugees

description: Data to analyze the association between participant sex and perceptions of child marriage among syrian refugees.
DOI: 10.17632/k3pzmgxbc7
title: Survey Consumer Attitudes SFSC Spain

description: The database contains the results of a survey, which has been conducted three times between April 2017 and November 2017. The sample size of the database was 1.969, this number has decreased to 1.616 after ruling out missing values and not completed questionnaire responses. The survey was first carried out in a farmer’s market (N=394), then, addressed to the Spanish biggest consumer association members (N=422) and finally, addressed to general public through a random telephone survey (N=1.153). Data is provided raw before the analysis with SPSS.
DOI: 10.6084/m9.figshare.14276348.v1
title: Mental health actions and nurse’s work

description: ABSTRACT Objective: to analyze the perception of nurses and other members of the patient care team about nurses’ actions in mental health care. Methods: the study was conducted with professionals from mental health services in the interior of the state of São Paulo. The data collected through semi-structured interviews, a questionnaire with closed questions and a focus group were submitted to content analysis. Results: the participants referred mainly to the nursing care with the body and physical health, but also identified the nurse as a “gateway” for care, facilitator and integrator of actions and as the professional who has more contact with the user. Final considerations: although the stereotype of nursing as “body caregiver” refers to the beginnings of psychiatric nursing, the perception of the participants showed aspects that suggest a change in relation to the role traditionally attributed to this profession.
DOI: 10.6084/m9.figshare.28498040.v1
title: datafigshare.sav

description: To describe the hildhood rauma in Bipolar Disorder and explore its associations with cognitive functioning.
DOI: 10.17632/yt52fw55wx
title: Attachment of Osteoblastic MC3T3-E1 Cells on Diamond-Like Carbon-Coated Silicon Plates

description: Data were collected by experiments in which DLC was coated on the silicon plate surface, then mouse osteoblastic MC3T3-E1 or fibroblastic NIH3T3 cells were cultured with the coated plates. Cell proliferation by a colorimetric assay and morphological observations using a field emission scanning electron microscope (FE-SEM) were examined. Data include an advantage of the proliferation of osteoblastic cells on DLC-coated plate and visualized images of osteoblastic cell on noncoated or DLC-coated silicon plate. Figure 1. Proliferation of NIH3T3 cells (a) or MC3T3-E1 cells (b) on noncoated or DLC-coated silicon plate. After attachment of the cells on each plate, the proliferation of the cells was assessed on days 3 and 7 post-inoculation. Figure 2. Raw Data Set of FE-SEM pictures of MC3T3-E1 cell. Attached cell on noncoated (a) or DLC-coated (b) silicon plates were observed by FE-SEM. Figure 3. Data Set of flat cross section of MC3T3-E1 on noncoated silicon plate. Figure 4. Data Set of flat cross section of MC3T3-E1 on DLC-coated silicon plate. All the separated pictures and condition of each picture taken are included in the data set. A detailed description of data could be found in the “Data in Brief” article “Manome Y., Tachibana T., Hiratsuka M., Sato K., Ohgoe Y., Hirakuri K. Osteoblastic MC3T3-E1 Cells on the Surface of Diamond-Like Carbon-Coated Silicon Plates: Field Emission Scanning Electron Microscopy Data", in 2021, submitted.
DOI: 10.17632/99zht5wjtk
title: Humanized mice reveal new insights into the thymic selection of human autoreactive CD8+ T cells. Yang et al.

description: FACS Raw data: FCS files for the main figures (and most supplementary figures) Excel file of compiled values from FCS data analysis used to make graphs on main figures Excel file of TCR sequencing data
DOI: 10.17632/gjk47cjm26
title: A Comparative Study of Protein Structure Prediction Tools for Challenging Targets: Snake Venom Toxins

description: Protein structure determination is a critical aspect of biological research, enabling us to understand protein function and potential applications. Recent advances in deep learning and artificial intelligence have led to the development of several protein structure prediction tools, such as AlphaFold2 and ColabFold. However, their performance has primarily been evaluated on well-characterised proteins, and comparisons using proteins with poor reference templates are lacking. In this study, we evaluated three modelling tools on their prediction of over 1000 snake venom toxin structures with no reference templates. Our findings show that AlphaFold2 (AF2) performed the best across all assessed parameters. We also observed that ColabFold (CF) only scored slightly worse than AF2, while being computationally less intensive. All tools struggled with regions of intrinsic disorder, such as loops and propeptide regions, and performed well in predicting the structure of functional domains. Overall, our study highlights the importance of exercising caution when working with proteins that have poor reference templates, are large, and contain flexible regions. Nonetheless, leveraging computational structure prediction tools can provide valuable insights into the modelling of protein interactions with different targets and reveal potential binding sites, active sites, and conformational changes, as well as into the design of potential molecular binders for reagent, diagnostic, or therapeutic purposes.

Here we have deposited all structures used in this study.
DOI: 10.17632/kxwwfx7sr5
title: Data for “A universal design equation for assessing sediment control in vegetative filter strips”

description: The data for all figures in the manuscript of "A universal design equation for assessing sediment control in vegetative filter strips".
DOI: 10.17632/8xp3nf6d9n
title: Meta-data about children outcomes of divorce preventive interventions

description: This data base includes the information about the effects of 30 after-divorce intervention studies on children adjustment and the characteristics of these studies.
It includes the followinf outcome variables:
Children´s psychosocial adjustment, which involves general symptomatology (e.g., depression, behavioral problems, and negative peer relationships), personal resources (e.g., self-esteem and coping) and adaptation to divorce (e.g., divorce adjustment and negative perception of divorce); and family functioning (e.g., interparental conflict and parent-child relationship quality). 
And the following study characteristics:
publication year, sample size, active control, informant, participant, application context, country, number of intervention sessions, duration of the intervention sessions, session type, ethnicity, high education, new parents’ partner, parent’s gender, children’s gender, children’s age stage, time from divorce, custodial parent, incentive for participantion, recruitment context and the random allocation of participants.
DOI: 10.17632/jk7tkhr8rx
title: (Dataset) Challenges in achieving accessibility on official COVID-19 websites

description: The dataset contains the web accessibility analysis of the 21 sites with official information on Covid-19.
DOI: 10.17632/wz9nwjcr3v
title: Data for: Geochemical constraints on Cenozoic intraplate magmatism and their relation to Jurassic dolerites in Tasmania, using Sr-Nd-Pb isotopes

description: Location (GDA94) and major trace element concentrations in weight% of sampled Tertiary and Jurassic Tasmanian mafic rocks.
DOI: 10.17632/878z7fp5jy
title: Supplementary Material

description: The absorption coefficients and weighting factors of iWSGG-P are calculated by the codes in this material.
DOI: 10.17632/n9g5x3h2cx
title: Cell Metabolism-D-18-00502R-Unprocessed raw immunoblots

description: This data include the unprocessed raw immunoblots for Cell Metabolism-D-18-00502R titled as "Transmembrane 4 L six family member 5 senses arginine for mTORC1 signaling".
DOI: 10.6084/m9.figshare.16910068.v1
title: EMA.xlsx

description: Early Measuring Assesment tool data set.
DOI: 10.17632/b7trjp8ns2
title: Accurate bessel functions Jn(z), Hn (1)(z) and Hn (2)(z) of integer order and complex argument

description: Title of program: BESJYH Catalogue Id: ACYQ_v1_0 Nature of problem The Bessel function appears in a wide range of physical applications, and in particular where there is axial symmetry. The package contains complex function routines to calculate J_n(z), Y_n(z), H_n^(1)(z) and H_n^(2)(z) for integer n and complex z. CORRECTION SUMMARY: Vol:Year:Page 39:1986:303 "000A CORRECTION 30/09/85" "Accurate Bessel functions Jn(z), Yn(z), H(1)n(z) and H(2)n(z) of integer order and complex argument. (C.P.C. 17(1979)321)." R.W.B. Ardill; K.J.M. Moriarty Note: correction instructions are contained in source code Versions of this program held in the CPC repository in Mendeley Data ACYQ_v1_0; BESJYH; 10.1016/0010-4655(79)90060-2 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/3xh9r2yj3c
title: Raw data files from RNA seq on HCC827 NSCLC cells

description: RNA was subjected to RNA-Seq analysison BGISEQ-500 system by Beijing Genomics Institute (BGI), China. Besides, the RNA was sheared and reverse transcribed through random primers to get cDNA used for library construction. Subsequently, perform sequencing on prepared library(Huang et al., 2017).All the generated raw sequencing reads were filtered to getclean reads stored as FASTQ format(Cock et al., 2010). Bowtie2 and HISAT was used to map clean reads to reference gene and genome repectively (Kim et al., 2015; Langmead et al., 2009). RSEMwas used to quantified the Genes expression level (FPKM)(Li and Dewey, 2011). NOISeq method was used to screen out differentially expressed genes between two groups with Foldchange≥2 and divergeprobability ≥0.8 (Tarazona et al., 2011). Gene Ontology (GO) and pathway annotation and enrichment analyses were based on the Gene Ontology Database (http://www.geneontology.org/) and KEGG pathway database (http://www.genome.jp/kegg/), respectively.
DOI: 10.17632/fh42htjgcm
title: GROUNDWORK STABILITY: EXPLORING SHALLOW FOUNDATION BEARING CAPACITY THROUGH TERZAGHI AND MEYERHOF EQUATIONS

description: Bearing Capacity Test .
DOI: 10.17632/k6rxbdpwxk
title: Transcription elongation defects link oncogenic SF3B1 mutations to targetable alterations in chromatin landscape. Boddu PC et.al.,

description: Original Blots and Microscope images of the above manuscript in Molecular Cell
DOI: 10.17632/wwtvpsdb5k
title: [DCE] Pilot experiment results Consumers' preferences and WTP for personalised nutrition

description: Results of the pilot experiment (N=40) carried out in Consumers' preferences and WTP for personalised nutrition (https://doi.org/10.1007/s40258-021-00647-3)
DOI: 10.15468/dl.8qjexs
title: Occurrence Download

description: A dataset containing 107006371 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 107006371 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001455-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/kgfzbpv2w4
title: Systematic Characterization of Mutations Altering Protein Degradation in Human Cancers

description: Summary: The Ubiquitin-Proteasome System (UPS) is the primary route for selective protein degradation in human cells. The UPS represents an attractive target for novel cancer therapeutics, but the precise UPS genes and substrates important for cancer growth are incompletely understood. Leveraging multi-omics data across more than 9,000 human tumors and 33 cancer types, we found that over 19% of all cancer driver genes impact UPS function. We implicate transcription factors as important substrates, and show that c-Myc stability is modulated by CUL3. Moreover, we developed a deep learning model (deepDegron) to identify mutations that result in degron loss, and experimentally validated predictions that gain-of-function truncating mutations in GATA3 and PPM1D result in increased protein stability. Lastly, we identified UPS driver genes associated with patient prognosis and the tumor microenvironment. This study demonstrates the important role of UPS dysregulation in human cancers and underscores the potential therapeutic utility of targeting the UPS. Data: The data.tar.gz file contains all of the necessary raw data and plots created in the manuscript. The dataset is meant to be used with our code that has been deposited on github as jupyter notebooks (https://github.com/ctokheim/Tokheim_2019). The original_films.zip contains all raw gel pictures shown in the manuscript.
DOI: 10.17632/86pgfj8wws
title: Dataset-natural gas on Countries financial stability

description: The dataset has been used for the analysis in the paper Natural Gas Market Turmoil and Financial Stability in European Countries: Does Supply Matter More Than Price? (currently submitted to a journal). 
The columns in the dataset spreadsheet report the following time series: 
 
 
DATE--&gt;dates of the data
aus--&gt;CISS for Austrian financial market
bel--&gt;CISS for Belgian financial market
ger CISS for German financial market
spa--&gt;CISS for Spanish financial market
fra--&gt;CISS for French financial market
uk--&gt;CISS for United Kingdom financial market
ire--&gt;CISS for Irish financial market
ita--&gt;CISS for Italian financial market
nee--&gt;CISS for Netherlands financial market
por--&gt;CISS for Portuguese financial market
supply--&gt;Supply of natural gas (Terajoule)
price_spot--&gt;1-front month natural gas price
ip--&gt;Industrial production (natural Log-Index 2015=100)
DOI: 10.6084/m9.figshare.8986676.v1
title: Supporting information: Bioaccumulation and toxicity of cadmium, copper, nickel, zinc, and their mixtures to aquatic insect communities

description: These datasets provide supporting information for the article by the same title, published in the journal <i>Environmental Toxicology and Chemistry</i>, which gives the context for the present information. The study consisted of two artificial stream experiments that exposed aquatic insect communities to Zn, Cu, and Cd ("Experiment 2") and to Zn, Cu, and Ni ("Experiment 3"). <br> The present work is part of a cumulative study in which aquatic insect communities were also tested with Cd, Zn, and Cd+Zn mixtures in "Experiment 1." <br> The datasets and supporting analyses consist of the following files: <b>1_SI-supplemental_analyses.pdf: </b>Supporting information on (a) periphyton composition, (b) bioaccumulation enrichment factors, (c) chlorophyll (a) and mayfly abundance correlations, and (d) effect concentration (EC) calculation considerations.<b>2_SI-detailed_data.xlsx</b>: This file includes detailed test data from both Experiment 2, conducted in 2014, and detailed test data from Experiment 3, conducted in 2015. <b>3_SI-EC_estimates.xlsx:</b> Calculation details of effect concentration (EC) estimates, organized in 4 tabs;<b>4_SI-SSD.xlsx: </b>Species sensitivity distribution (SSD) datasets and calculations;<b>5_Natural metal ratios.xlsx:</b> Data sources and data details behind Figure 2 in the linked article, which shows ratios of common metal mixtures in various natural waters around the world (Cd vs Zn, Cu vs Zn, Cu vs Ni) <b>6_Experiment2-Larvae Data-by size.xlsx:</b> End of test larval data counts, binned by size of individual (nearest millimeter), experiment 2, reported by experimental stream number <b>7_Experiment3-Larvae Data-by size.xlsx</b>: Same as #6, but for Experiment 3 <br>
DOI: 10.17632/wjd9t4k7g4
title: Dataset of dentin biomodifiers and odontoblast differentiation

description: Raw data on the effects of dentin biomodifiers on viability and differentiation into odontoblast phenotype in a dentin-human dental pulp stem cell co-culture model. The first sheet, titled "LDH Cytotoxicity," contains raw data from the evaluation of the cytotoxicity of dentin biomodifiers (0.2% chlorhexidine, 1% glutaraldehyde, 6.5% proanthocyanidin, and 600 µM myricetin). Cytotoxicity was measured by assessing the lactate dehydrogenase (LDH) released into the medium using spectrophotometry. The second sheet, titled "qPCR Odontogenic Markers," contains data on the expression of genes encoding Collagen Type I, dentin sialophosphoprotein, matrix extracellular phosphoglycoprotein, and osteopontin, evaluated by RT-qPCR. Additionally, the third sheet, titled "Alizarin Red," contains raw data from the evaluation of extracellular matrix mineralization using the alizarin red staining method, with absorbance quantified by spectrophotometry.