cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19100038
title: Influence factors on injury severity of bicycle-motor vehicle crashes: A two-stage comparative analysis of urban and suburban areas in Beijing

description: More attention should be given to bicycle-motor vehicle (BMV) crashes, as cyclists are at a higher risk of suffering injuries than motor vehicle users in a crash. This study aims to explore the factors influencing the injury severity of bicycle-motor vehicle (BMV) crashes in Beijing (China) and discusses the commonalities and differences between the urban and suburban areas. Information regarding 1,136 crashes between bicycles and motor vehicles were collected using police reported data from 2014 to 2015. A two-stage approach integrating random parameters logit (RP-logit) model and two-step clustering (TSC) algorithm was proposed to investigate the significant influence factors and their combination characteristics. Specifically, the RP-logit model was first used to identify the significant influence factors of urban and suburban areas, and then the TSC algorithm was applied to reveal the combination characteristics of significant influence factors for the fatal crashes. Five factors were found to be statistically significant and had random effects on the injury severity in urban areas, i.e., type of motor vehicle, motor vehicle license ownership, type of bicycle, signal control mode and lighting condition; and seven factors were found to be statistically significant on the injury severity in suburban areas, i.e., type of motor vehicle, motor vehicle license ownership, physical isolation facility, signal control mode, weather, visibility and lighting condition. Based on TSC, the combination of significant factors showed different characteristics for fatal crashes in urban and suburban areas, in which two types of the scene including five factors should be concerned in urban areas while one type of scene containing four factors in suburban areas. The results suggest that different influence factors and individual heterogeneity exist in the RP-logit model for injury severity analysis of BMV crashes in urban and suburban areas. It shows that in urban areas, heavy truck, light truck and bus significantly increase the likelihood of fatal injury than that of suburban areas. These findings can provide valuable reference information for BMV crashes response, such as heavy truck restriction, to facilitate regional safety measures for urban and suburban areas.
DOI: 10.6084/m9.figshare.19100038.v1
title: Influence factors on injury severity of bicycle-motor vehicle crashes: A two-stage comparative analysis of urban and suburban areas in Beijing

description: More attention should be given to bicycle-motor vehicle (BMV) crashes, as cyclists are at a higher risk of suffering injuries than motor vehicle users in a crash. This study aims to explore the factors influencing the injury severity of bicycle-motor vehicle (BMV) crashes in Beijing (China) and discusses the commonalities and differences between the urban and suburban areas. Information regarding 1,136 crashes between bicycles and motor vehicles were collected using police reported data from 2014 to 2015. A two-stage approach integrating random parameters logit (RP-logit) model and two-step clustering (TSC) algorithm was proposed to investigate the significant influence factors and their combination characteristics. Specifically, the RP-logit model was first used to identify the significant influence factors of urban and suburban areas, and then the TSC algorithm was applied to reveal the combination characteristics of significant influence factors for the fatal crashes. Five factors were found to be statistically significant and had random effects on the injury severity in urban areas, i.e., type of motor vehicle, motor vehicle license ownership, type of bicycle, signal control mode and lighting condition; and seven factors were found to be statistically significant on the injury severity in suburban areas, i.e., type of motor vehicle, motor vehicle license ownership, physical isolation facility, signal control mode, weather, visibility and lighting condition. Based on TSC, the combination of significant factors showed different characteristics for fatal crashes in urban and suburban areas, in which two types of the scene including five factors should be concerned in urban areas while one type of scene containing four factors in suburban areas. The results suggest that different influence factors and individual heterogeneity exist in the RP-logit model for injury severity analysis of BMV crashes in urban and suburban areas. It shows that in urban areas, heavy truck, light truck and bus significantly increase the likelihood of fatal injury than that of suburban areas. These findings can provide valuable reference information for BMV crashes response, such as heavy truck restriction, to facilitate regional safety measures for urban and suburban areas.
DOI: 10.6084/m9.figshare.11760012.v1
title: Additional file 4 of Whole-transcriptome sequencing uncovers core regulatory modules and gene signatures of human fetal growth restriction

description: Additional file 4: Table S4. Differentially expressed protein-coding genes, lncRNAs, and miRNAs.
DOI: 10.6084/m9.figshare.11760021.v1
title: Additional file 5 of Whole-transcriptome sequencing uncovers core regulatory modules and gene signatures of human fetal growth restriction

description: Additional file 5: Table S5. GSEA of key GO item enrichment.
DOI: 10.6084/m9.figshare.7560557
title: Table S11 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Data matrix for ancestral state reconstruction.
DOI: 10.6084/m9.figshare.7560536
title: Table S10 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Presence of <i>Blattabacterium</i> in Blattodea transcriptomes.
DOI: 10.6084/m9.figshare.7560539.v1
title: Table S13 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

description: List of used taxon names with their definitions and synonyms including the newly proposed names.
DOI: 10.6084/m9.figshare.7560545.v1
title: Table S6 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

description: Species group assignments for the Four-Cluster Likelihood Mapping (FcLM).
DOI: 10.6084/m9.figshare.7560539
title: Table S13 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: List of used taxon names with their definitions and synonyms including the newly proposed names.
DOI: 10.6084/m9.figshare.7560548
title: Table S3 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Reference species used for the ortholog set and number of orthologs identified. Table S3.1: Official gene sets from whole genome projects of four reference species used for transcript orthology assessment, including the source, version and number of genes. Table S3.2: Orthograph statistics.
DOI: 10.6084/m9.figshare.7560530
title: Table S5 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Review of evidence for the placement of <i>Anallacta</i> in Blattellinae.
DOI: 10.6084/m9.figshare.7560554.v2
title: Table S1 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Detailed species list including NCBI accession numbers.
DOI: 10.6084/m9.figshare.25131781.v2
title: Isotopic Data Sheets from Mesophotic corals in Hawaiʻi maintain autotrophy to survive low-light conditions

description: Excel sheets organizing our isotopic data and corresponding to the SIBER, simple linear regression, and multivariable linear regressions conducted in this study.
DOI: 10.6084/m9.figshare.7560545
title: Table S6 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Species group assignments for the Four-Cluster Likelihood Mapping (FcLM).
DOI: 10.6084/m9.figshare.7560551
title: Table S9 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Comparison of ages obtained from three dating analyses.
DOI: 10.6084/m9.figshare.7560530.v1
title: Table S5 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

description: Review of evidence for the placement of <i>Anallacta</i> in Blattellinae.
DOI: 10.6084/m9.figshare.7560557.v2
title: Table S11 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Data matrix for ancestral state reconstruction.
DOI: 10.6084/m9.figshare.7560563.v1
title: Table S12 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

description: Results of ancestral state reconstruction.
DOI: 10.6084/m9.figshare.19619123.v1
title: Additional file 18 of Systematic trait dissection in oilseed rape provides a comprehensive view, further insight, and exact roadmap for yield determination

description: Additional file 18: Table S11. List of primers used in this study, including fine-mapping, gene cloning, and qRT-PCR.
DOI: 10.6084/m9.figshare.7560533
title: Table S4 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Groups defined for generating the decisive amino-acid dataset.
DOI: 10.6084/m9.figshare.7560536.v1
title: Table S10 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

description: Presence of <i>Blattabacterium</i> in Blattodea transcriptomes.
DOI: 10.6084/m9.figshare.7560563.v2
title: Table S12 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Results of ancestral state reconstruction.
DOI: 10.6084/m9.figshare.7560539.v2
title: Table S13 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: List of used taxon names with their definitions and synonyms including the newly proposed names.
DOI: 10.6084/m9.figshare.7560545.v2
title: Table S6 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Species group assignments for the Four-Cluster Likelihood Mapping (FcLM).
DOI: 10.6084/m9.figshare.7560548.v1
title: Table S3 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

description: Reference species used for the ortholog set and number of orthologs identified. Table S3.1: Official gene sets from whole genome projects of four reference species used for transcript orthology assessment, including the source, version and number of genes. Table S3.2: Orthograph statistics.
DOI: 10.6084/m9.figshare.7560554
title: Table S1 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Detailed species list including NCBI accession numbers.
DOI: 10.6084/m9.figshare.7560557.v1
title: Table S11 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

description: Data matrix for ancestral state reconstruction.
DOI: 10.5281/zenodo.10656684
title: Code from "Population dynamic consequences of context-dependent tradeoffs across life histories". The American Naturalist.

description: This repository hosts the R scripts to reproduce results and figures from the article Population dynamic consequences of context-dependent tradeoffs across life histories.

See the README file for a description of the different files contained in this repository.
DOI: 10.5281/zenodo.10656685
title: Code from "Population dynamic consequences of context-dependent tradeoffs across life histories". The American Naturalist.

description: This repository hosts the R scripts to reproduce results and figures from the article Population dynamic consequences of context-dependent tradeoffs across life histories.

See the README file for a description of the different files contained in this repository.
DOI: 10.6084/m9.figshare.11760123.v1
title: Additional file 3 of Genome-wide identification and expression profiling of SET DOMAIN GROUP family in Dendrobium catenatum

description: Additional file 3. Expression data of DcSDG genes from different tissues and organs in D. catenatum. The FPKM values of DcSDG genes in different tissues and organs was used for expression analysis in Fig. 6. Lf: leaf, Ro: root, Gr: green root tip, Wr: white part of root, St: stem, Fb: flower bud, Se: sepal, Lb: labellum, Po: pollinia, and Gs, gynostemium.
DOI: 10.6084/m9.figshare.7560560
title: Table S7 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Results for approximately unbiased (AU) tests.
DOI: 10.5281/zenodo.2640931
title: Dataset: Backwater rise due to large wood accumulations

description: This dataset includes flow measurements and wood accumulation characteristics of flume experiments conducted at the Laboratory of Hydraulics, Hydrology and Glaciology (VAW), ETH Zurich.
DOI: 10.5281/zenodo.2640932
title: Dataset: Backwater rise due to large wood accumulations

description: This dataset includes flow measurements and wood accumulation characteristics of flume experiments conducted at the Laboratory of Hydraulics, Hydrology and Glaciology (VAW), ETH Zurich.
DOI: 10.6084/m9.figshare.19619150
title: Additional file 8 of Systematic trait dissection in oilseed rape provides a comprehensive view, further insight, and exact roadmap for yield determination

description: Additional file 8: Table S1. Phenotypic variation of both parents and the BnaZN-RIL population in six environments.
DOI: 10.6084/m9.figshare.7560560.v1
title: Table S7 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

description: Results for approximately unbiased (AU) tests.
DOI: 10.6084/m9.figshare.7560566.v2
title: Table S2 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Cross-contamination and assembly statistics.
DOI: 10.6084/m9.figshare.19619111.v1
title: Additional file 14 of Systematic trait dissection in oilseed rape provides a comprehensive view, further insight, and exact roadmap for yield determination

description: Additional file 14: Table S7. List of identified QTL (A), consensus QTL (B), and QTL clusters (C).
DOI: 10.6084/m9.figshare.19619114
title: Additional file 15 of Systematic trait dissection in oilseed rape provides a comprehensive view, further insight, and exact roadmap for yield determination

description: Additional file 15: Table S8. Statistical analysis of consensus QTL overlapping between pair-wise combinations among the 21 investigated traits.
DOI: 10.6084/m9.figshare.19619117
title: Additional file 16 of Systematic trait dissection in oilseed rape provides a comprehensive view, further insight, and exact roadmap for yield determination

description: Additional file 16: Table S9. The annotated genes in the fine-mapped genomic regions of four representative hub-QTL clusters.
DOI: 10.6084/m9.figshare.19619114.v1
title: Additional file 15 of Systematic trait dissection in oilseed rape provides a comprehensive view, further insight, and exact roadmap for yield determination

description: Additional file 15: Table S8. Statistical analysis of consensus QTL overlapping between pair-wise combinations among the 21 investigated traits.
DOI: 10.6084/m9.figshare.19619150.v1
title: Additional file 8 of Systematic trait dissection in oilseed rape provides a comprehensive view, further insight, and exact roadmap for yield determination

description: Additional file 8: Table S1. Phenotypic variation of both parents and the BnaZN-RIL population in six environments.
DOI: 10.6084/m9.figshare.7560566
title: Table S2 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Cross-contamination and assembly statistics.
DOI: 10.6084/m9.figshare.7560569.v1
title: Table S8 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

description: Selected fossil calibrations used in our study. (justifications are provided in Suppl. material S2).
DOI: 10.6084/m9.figshare.7560566.v1
title: Table S2 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

description: Cross-contamination and assembly statistics.
DOI: 10.6084/m9.figshare.15048965
title: Additional file 1 of Metabolome and transcriptome profiling provide insights into green apple peel reveals light- and UV-B-responsive pathway in anthocyanins accumulation

description: Additional file 1: Table S1. Primers for qRT-PCR.
DOI: 10.6084/m9.figshare.14897369
title: Additional file 2 of Composition and diversity of gut microbiota in Pomacea canaliculata in sexes and between developmental stages

description: Additional file 2: Datafile S2. Abundance differences in the gut microbiota communities by Kruskal-Wallis H test, among the samples from female, male and juvenile at phylum and genus levels.
DOI: 10.6084/m9.figshare.7560569.v2
title: Table S8 from An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea).

description: Selected fossil calibrations used in our study. (justifications are provided in Suppl. material S2).
DOI: 10.6084/m9.figshare.14897423
title: Additional file 3 of Single-cell spatial transcriptomic analysis reveals common and divergent features of developing postnatal granule cerebellar cells and medulloblastoma

description: Additional file 3: Supplementary Table S2. Cell type markers. Related to Figs. 1, 4 and 7.
DOI: 10.6084/m9.figshare.14897432
title: Additional file 6 of Single-cell spatial transcriptomic analysis reveals common and divergent features of developing postnatal granule cerebellar cells and medulloblastoma

description: Additional file 6: Supplementary Table S5. Genes specifically associated with four GN states. Related to Fig. 5.
DOI: 10.6084/m9.figshare.14897426
title: Additional file 4 of Single-cell spatial transcriptomic analysis reveals common and divergent features of developing postnatal granule cerebellar cells and medulloblastoma

description: Additional file 4: Supplementary Table S3. Monocle 3 module genes. Related to Fig. 2.
DOI: 10.6084/m9.figshare.14897438
title: Additional file 8 of Single-cell spatial transcriptomic analysis reveals common and divergent features of developing postnatal granule cerebellar cells and medulloblastoma

description: Additional file 8: Supplementary Table S7. DEGs between normal dividing GNPs and dividing GNP-like tumor cells. Related to Fig. 8.
DOI: 10.6084/m9.figshare.14897366
title: Additional file 1 of Composition and diversity of gut microbiota in Pomacea canaliculata in sexes and between developmental stages

description: Additional file 1: Datafile S1. Noranked OTUs on genus level using the BLASTn on NCBI nucleotide collection.
DOI: 10.6084/m9.figshare.14897263.v1
title: Additional file 2 of Clinical characteristics and genetic spectrum of 26 individuals of Chinese origin with primary ciliary dyskinesia

description: Additional file 2. Table S1. Clinical features and detected mutated genes and variants of the 26 confirmed PCD patients of Chinese origin. a. The patients are listed according to different categories outlining the included patients. The first thirteen patients (patient 1, 2, 3, 4, 5, 6, 13, 18, 20, 22, 24, 25, 26) have KS (with or without ciliary ultrastructural defects), the next six patients (patient 8, 9, 10, 11, 12, 15) have ciliary ultrastructural defects without KS, and the last seven patients (patient 7, 14, 16, 17, 19, 21, 23) are patients with biallelic mutations alone (without KS or any ciliary ultrastructural defect). b. Most of the patients are too young that we did not know whether they have the infertility history or let them do the sperm test. c. If family members of a patient have a history of asthma or chronic bronchitis, the patient is determined to have a suspected PCD family history. d. For bronchiectasis, 1 means the patient has bronchiectasis in that certain location shown in CT scans, while 0 means no bronchiectasis is observed in that certain location. e. For pathogenicity prediction, SNVs in exonic regions are predicted by ACMG/AMP, indels are predicted using MutationTaster, variants in splicing regions are predicted using Human Splicing Finder. f. NA: not available, ND: not detected
DOI: 10.6084/m9.figshare.14897369.v1
title: Additional file 2 of Composition and diversity of gut microbiota in Pomacea canaliculata in sexes and between developmental stages

description: Additional file 2: Datafile S2. Abundance differences in the gut microbiota communities by Kruskal-Wallis H test, among the samples from female, male and juvenile at phylum and genus levels.
DOI: 10.6084/m9.figshare.14897225
title: Additional file 1 of Characterization of Salmonella serotypes prevalent in asymptomatic people and patients

description: Additional file 1: Supplementary Table 1. The information and antimicrobial resistance phenotype of human Salmonella isolates.
DOI: 10.6084/m9.figshare.14897260.v1
title: Additional file 1 of Clinical characteristics and genetic spectrum of 26 individuals of Chinese origin with primary ciliary dyskinesia

description: Additional file 1. The gene list of known 51 PCD genes and 42 suspected PCD genes. 93 PCD candidate genes are listed in the Excel file, including 51 known genes and 42 suspected ones. Fifty-one known PCD-causative genes were retrieved from OMIM and PubMed, and forty-two suspected genes were selected based on all of the following features: (1) belong to the same gene family as known PCD pathogenic genes; (2) have high expression in lung and testis tissues, where motile cilia are abundant, either for mucus expelling or for sperm motility; (3) encode a ciliary structural protein or a functional composition of motile cilia, such as proteins associating with intraflagellar transport (IFT) or cilia stability and assembly.
DOI: 10.6084/m9.figshare.14897260
title: Additional file 1 of Clinical characteristics and genetic spectrum of 26 individuals of Chinese origin with primary ciliary dyskinesia

description: Additional file 1. The gene list of known 51 PCD genes and 42 suspected PCD genes. 93 PCD candidate genes are listed in the Excel file, including 51 known genes and 42 suspected ones. Fifty-one known PCD-causative genes were retrieved from OMIM and PubMed, and forty-two suspected genes were selected based on all of the following features: (1) belong to the same gene family as known PCD pathogenic genes; (2) have high expression in lung and testis tissues, where motile cilia are abundant, either for mucus expelling or for sperm motility; (3) encode a ciliary structural protein or a functional composition of motile cilia, such as proteins associating with intraflagellar transport (IFT) or cilia stability and assembly.
DOI: 10.6084/m9.figshare.14897420.v1
title: Additional file 2 of Single-cell spatial transcriptomic analysis reveals common and divergent features of developing postnatal granule cerebellar cells and medulloblastoma

description: Additional file 2: Supplementary Table S1. Basic information for single cell and spatial transcriptomics datasets of developmental and medulloblastoma samples. Related to Figs. 1, 4 and 7.