cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.16v7n/9
title: BodySize

description: Intertegular spans of each of the four most common flower visitors to H. virgata. See ReadMe file associated with Visitation.csv for further information.
DOI: 10.5061/dryad.1m9q8/1
title: @_wrSSR_STRUC_input_140824_@@@

description: Microsatellite genotype data of Malaysian rice
DOI: 10.5061/dryad.1m9q8/2
title: ##Song12_Suppl_RiceInfo+sh4+Bh4+sample_code_140910

description: This file contains sample naming for sh4 multiple sequence alignment.
DOI: 10.5061/dryad.1m9q8/3
title: #_sh4_MSA_140910

description: Multiple sequence alignment for sh4 fragments.
DOI: 10.5061/dryad.1s15q/1
title: WING paper Data for repository

description: Wing measurements taken for the preparation of the Evolution manuscript. This Excel file contains 10 sheets. A brief discription may be found in rows below the data in each sheet.
DOI: 10.5061/dryad.1vt90/1
title: MHC class II DQB
DOI: 10.5061/dryad.1vt90/2
title: MHC class II DRA
DOI: 10.5061/dryad.20k7j/1
title: Trindade et al Fitness Data

description: Single- and double-fitness data
DOI: 10.5061/dryad.313dq/5
title: Supplementary Table 5

description: Gradient lengths and results of CCA ordinations of live and death diatom assemblages against vegetation cover (veg) and depth in the three studied lakes. Significant ordinations at α = 0.05 are in boldface.
DOI: 10.5061/dryad.313dq/6
title: Supplementary Table 6

description: Gradient lengths and results of CCA ordinations of live and death diatom assemblages against conductivity, pH, Secchi depth and depth in the three-lake combined dataset. Significant ordinations at α = 0.05 are in boldface.
DOI: 10.5061/dryad.313dq/7
title: Supplementary Table 7

description: Percentage variance explained by each environmental variable in LAs and DAs as calculated by partial CCA. The significance is indicated based on 199 unrestricted ANOVA like permutations (p &lt; 0.05*, p &lt; 0.01**, p &lt; 0.001***).
DOI: 10.5061/dryad.4ff07/1
title: 2008-2011_Mercury_Breeding decision_LH_Testosterone

description: Raw data. For 2008 and 2011: Sex, breeding decision and mercury levels. For 2008: sex, breeding decision, mercury, GnRH treatment, LH and testosterone levels.
DOI: 10.5061/dryad.5d81k/1
title: DataFileLebigreEtAl

description: These data are for the paper:"Limited indirect fitness benefits of male group membership in a lekking species."by Christophe Lebigre et al. Molecular Ecology (2014)The data come from a large scale study of a Finnish black grouse population, and are sufficient to replicate the analyses presented in the article.If you are interested in running analyses using this dataset or the full dataset, then please do get in touch withChristophe Lebigre (christophe-dot-lebigre-at-uclouvain-dot-be) or Carl Soulsbury (csoulsbury-at-lincoln-dot-ac-dot-uk). Entries are:NewcomerID: running number for the 104 newcomersStudy site code: running number for each of the study sitesyear: Study yearID_other: running number for the other lekking malesTop_male: whether the other lekking male was a top male (1) or not (0)Father: whether the other lekking male was the father of the newcomer (1) or not (0)FullSib: whether the other lekking male was a fullsibling of the newcomer (1) or not (0)HalfSib: whether the other lekking male is a halfsibling of the newcomer (1) or not (0)Cops: mating success of the other maleKinship: k value of the dyad newcomer-other lekking maleRelatedness: RQG value of the dyad newcomer-other lekking maleTot_cops: total number of copulations observed on the study site in a specific year
DOI: 10.5061/dryad.5d81k/2
title: GenotypesLekkingBlackGrouse

description: These data are for the paper:"Limited indirect fitness benefits of male group membership in a lekking species."by Christophe Lebigre et al. Molecular Ecology (2014)The data come from a large scale study of a Finnish black grouse population, and are sufficient to replicate the analyses presented in the article.If you are interested in running analyses using this dataset or the full dataset, then please do get in touch withChristophe Lebigre (christophe-dot-lebigre-at-uclouvain-dot-be) or Carl Soulsbury (csoulsbury-at-lincoln-dot-ac-dot-uk). Entries are:Focal_newcomer: whether the individual is a newcomer (1) or not (2)ID: individual ID (running number)Subsequent entries: alleles for the genotyped loci (BG16,BG18,BG15,BG19,BG6,TTT1,TTD2,TTD3,TUD6,TUT3,TUT4).
DOI: 10.5061/dryad.5d81k/3
title: LekSizeVsTotCops

description: These data are for the paper:"Limited indirect fitness benefits of male group membership in a lekking species."by Christophe Lebigre et al. Molecular Ecology (2014)The data come from a large scale study of a Finnish black grouse population, and are sufficient to replicate the analyses presented in the article.If you are interested in running analyses using this dataset or the full dataset, then please do get in touch withChristophe Lebigre (christophe-dot-lebigre-at-uclouvain-dot-be) or Carl Soulsbury (csoulsbury-at-lincoln-dot-ac-dot-uk). Entries are:Site: study site codeYear: study yeartot_cops: total number of observed copulationslek_size: lek size
DOI: 10.5061/dryad.6023qs3k/2
title: raw_data_boar

description: Genotype data (14 microsatellite loci) for all the wild boar individuals analysed in this study. File also contains information on geographic origin, sex and approx. age of the individuals (if known)
DOI: 10.5061/dryad.633bk/15
title: sample_1_to_12_mpileup

description: This is the pileup file (see VarScan application).
DOI: 10.5061/dryad.633bk/4
title: Supp_File_1

description: SUPPLEMENTARY FILE 1. Custom script (‘tetracolor’) by Rafael Maia in R
DOI: 10.5061/dryad.633bk/5
title: Supp_File_2

description: SUPPLEMENTARY FILE 2. Names (FASTA sequence labels) of the chromosome sequences from the zebra finch genome used in this study.
DOI: 10.5061/dryad.633bk/6
title: Supp_File_3

description: SUPPLEMENTARY FILE 3. Tabular BLASTN results for the Zimmerius contigs against the zebra finch genome, retaining only hits with e-value ≤ 1e-20.
DOI: 10.5061/dryad.633bk/7
title: Supp_File_6

description: SUPPLEMENTARY FILE 6. NEXUS file for parsimony analysis in PAUP.
DOI: 10.5061/dryad.633bk/8
title: Supp_File_7

description: SUPPLEMENTARY FILE 7. R script for gene ontology enrichment analysis.
DOI: 10.5061/dryad.633bk/9
title: Supp_File_8

description: SUPPLEMENTARY FILE 8. Estimates of theta for various datasets and priors. Each of 6 datasets was subjected to a set of alpha and beta parameters allowing for different current and ancestral population sizes: (1) a gamma (2,2000) prior (with`q = 0.001) for small population sizes, and (2) a gamma (1,10) prior (with`q = 0.1) for large population sizes. Three datasets (called ‘allLoci’; n = 954 SNPs) include all SNPs called across all individuals (see Methods), while the three remaining datasets (n = 947) have constant heterozygotes removed; in each of these two groups of datasets, the first dataset includes all lineages, while the other two datasets have one lineage (‘southern’ Z. viridiflavus or ‘intermediate’ mosaic birds) removed. Each theta stands for one of the nodes in the tree. Note how thetas are heavily influenced by the prior.
DOI: 10.5061/dryad.6m11c/1
title: Data on Soil C-N-P-MS# 14-0189R1-EA-2014-08-10

description: Properties of soil chemistry on total orgnic carbon, nitrogen, and phosphorus in the experimental paddy field after 7 years of phosphorus application, also including soil labile carbon, soil available phosphorus
DOI: 10.5061/dryad.6m11c/2
title: Data on Soil MBC-MBP-MS# 14-0189R1-EA-2014-08-10

description: Properties of soil chemistry on microbial biomass in the experimental paddy field after 7 years of phosphorus application, including the following microbial biomass carbon (MBC) and microbial biomass phosphorus (MBP)
DOI: 10.5061/dryad.6m11c/3
title: Data on Soil C-P vis MBC-MBP-MS# 14-0189R1-EA-2014-08-10

description: Properties of soil chemistry on C:P stoichiometry and microbial biomass, in the experimental paddy field after 7 years of phosphorus application
DOI: 10.5061/dryad.6n890/5
title: Eocene Data (Raw)

description: The Eocene data from the Paleobiology Database (www.paleobiodb.org), downloaded 10-09-2013. Please note that this is raw data, un-culled. See the manuscript for a discussion of the culled elements.
DOI: 10.5061/dryad.6n890/6
title: Paleocene Data (Raw)

description: The Paleocene data from the Paleobiology Database (www.paleobiodb.org), downloaded 10-09-2013. Please note that this is raw data, un-culled. See the manuscript for a discussion of the culled elements.
DOI: 10.5061/dryad.6n890/7
title: SUPPLEMENTARY FIGURES

description: The supplementary figures. For further details see the manuscript.
DOI: 10.5061/dryad.7fc8c/1
title: Des Moines Lobe Wetland Data

description: This geodatabase contains lidar data and NWI wetland data for the Des Moines Lobe of the North American Prairie Pothole region.
DOI: 10.5061/dryad.7p2r4/1
title: Chemical and experimental data for Pringle et al. 2014 Ecol Evol

description: The zipped file contains 5 excel workbooks and a ReadMe file. The excel workbooks contain chemical data on sugars/carbohydrates, amino acids, and cardenolides, as well as experimental data from the forced-diet and choice experiments described in the manuscript.
DOI: 10.5061/dryad.82c67/2
title: Thermal data

description: Data used in the thermoregulation study showing the temperature change after being under a radiant heat source.
DOI: 10.5061/dryad.8fc60/4
title: Projected mismatch

description: Projected future values of population mismatch under different climate change scenarios. Used as input in the simulation model.
DOI: 10.5061/dryad.8m4r5/1
title: Genotypes for the association panel
DOI: 10.5061/dryad.9fm28/1
title: Dawn_of_Open_Access_Data_files

description: Data table analyzed in the paper and data files gathered. Includes ReadMe.
DOI: 10.5061/dryad.bv24t/1
title: Summary of capture-recapture data
DOI: 10.5061/dryad.bv24t/2
title: Change_in_BodyCondition

description: Data for assessing the effect of loggers on change in body mass
DOI: 10.5061/dryad.c1q5h/1
title: Characteristics of four songtypes for Andropadus virens by site in Cameroon, Central Africa

description: These are the measured song characteristic averages of four songtypes of the little greenbul, Andropadus virens, at each site in Cameroon sampled in the manuscript "Predicting Song from Space". If particular song or bird data are needed, please contact the authors.
DOI: 10.5061/dryad.c4d3j/3
title: TABLE_S1

description: Table S1. List of material examined, catalog numbers, and genetic coverage for each taxon. EToL numbers E0001­–E1184 indicate taxa targeted and sequenced for this study; for some genes/taxa the corresponding sequence was retrieved from NCBI). EToL numbers G1185–G1534 indicate sequences retrieved from NCBI or other genomic databases. Composite taxa include the two species names on labels (Genus_species1_species2).
DOI: 10.5061/dryad.cr571/1
title: Severns et al. 2014 Journal of Applied Ecology data set for Dryad

description: Disease severity data for experimentally initiated wheat stripe rust outbreaks and the distribution of disease on susceptible wheat hosts between 4.0 and 4.5 generations of disease build-up and spread.
DOI: 10.5061/dryad.j015n/8
title: fish-nexus-files-with-gaps-from-uce-alignment.tar.gz

description: NEXUS alignment files for all taxa across UCE loci, having entries for taxa with missing data.
DOI: 10.5061/dryad.j7737/1
title: Time-depth recorders attached to chick-rearing murres in 2004

description: Raw text files generated by Lotek download software. After a preamble including the logger serial number (8XXX), the data file presents three columns: the time & date, the temperature in degrees Celsius and the pressure in psi. To convert psi into approximate depth, multiply by 0.705. The text files are organized into three folders representing the three deployments. Each file name also has the last five digits of the band number of the individual bird to whom the TDR was attached (the total band number is 996XXXXX, where XXXXX is the unique identifier of the bird and included in the title of the file). The band number serves as the identifier to relate it to the meta-data file that includes sex, age and other attributes of the bird.
DOI: 10.5061/dryad.j7737/2
title: Time-depth recorders attached to chick-rearing murres in 2006

description: Raw text files generated by Lotek download software. After a preamble including the logger serial number, the data file presents three columns: the time & date, the temperature in degrees Celsius and the pressure in psi. To convert psi into approximate depth, multiply by 0.705. The text files are organized into two folders: FW and DLW. The FW folders include all those birds that were observed during feeding watches. The DLW folder includes all those birds that were injected with doubly-labelled water (except controls labelled as "CON"). There was no statistical difference in the behaviour of DLW-injected and control birds (for more details, see: http://datadryad.org/resource/doi:10.5061/dryad.23td2). Each folder then has a number of subfolders representing the different deployment dates. Each file name also has either all eight digits of the band number (if the band number started with 785) or the last five digits of the band number (if the band number started with 996, which was dropped for simplification in the field) of the individual bird to whom the TDR was attached. The band number serves as the identifier to relate it to the meta-data file that includes sex, age and other attributes of the bird. In some cases, additional information (e.g. site location) were included in the file name to simplify work in the field, but that is not needed to uniquely identify the bird.
DOI: 10.5061/dryad.jc2pj/1
title: SNP Genotypes

description: SNP genotypes for 224 individuals
DOI: 10.5061/dryad.m317q/1
title: Data Accessibility for Molecular Ecology

description: The uploaded file inlcudes all the data associated with each blood sample, including species, origin of sample, results of bacterial culture and Bartonella DNA detection, as well as GenBank accession numbers associated with the MLST.
DOI: 10.5061/dryad.n2m8v/1
title: Genotypic data and DNA concentrations

description: Excel spread sheet containing the following data: Genotypic and DNA concentration Data for the scat collection and storage experiment (41 samples). DNA concentration 273 samples, genotypic and DNA conctration data for 21 samples for DNA yeild and optimization experiment.
DOI: 10.5061/dryad.n2m8v/2
title: Gimlet and Gemini input files

description: Genotypic data for 41 DNA samples grouped by treatment for the scat collection and storage and 21 DNA samples grouped by DNA concentration DNA yield and error calculations.
DOI: 10.5061/dryad.r86n4/1
title: CubanCroc_Heredity_DRYAD
DOI: 10.5061/dryad.0q13g/4
title: Growth_and_Habitat

description: Growth of individual Atlantic salmon juveniles recaptured from eight different streams near the Minas Basin, Nova Scotia. Habitat measurements were performed within 5 meters of each juvenile collected, and all measurements are described in the Excel file.
DOI: 10.5061/dryad.0q13g/5
title: R_Script_for_estimaing_offspring_fitness_curves

description: This script can be used in R, in conjunction with the dryad data "Economy_Releases.xls", "Stewiacke_Releases.xls" and "GreatVillage_Releases.xls", to estimate the relationship between egg size and offspring fitness in eight streams near the Minas Basin, Nova Scotia.
DOI: 10.5061/dryad.1k1ns/6
title: JR32-AWE (GenBank format)

description: GenBank formatted file derived from editing NC_002942 (Legionella pneumophila subsp. pneumophila str. Philadelphia 1). JR32 is a common laboratory strain, a streptomycin resistant, restriction-minus derivative of the Philadelphia-1 clinical strain. This sequence reflects the genome of the JR32 isolate in Alexander Ensminger's strain collection.
DOI: 10.5061/dryad.2hr77/3
title: Cluster buoyant density

description: Buoyant density of yeast from 7-227d of evolution.
DOI: 10.5061/dryad.2k4vc/1
title: Ketola_etal_MainData_to_Dryad

description: bacterial growth data (maximum growth rate and yield) in various stressors.
DOI: 10.5061/dryad.2k4vc/2
title: Ketola_Evolution_virulence_to_Dryad

description: Virulence of evolved Serratia marcescens clones in Drosophila melanogaster
DOI: 10.5061/dryad.5b6t7/1
title: Rcode_Pearse_Hipp_2014

description: code (R programming language) for analyses in Pearse & Hipp 2014.  Some data on site-level characteristics within code.
DOI: 10.5061/dryad.5b6t7/2
title: damage_by_oak_species

description: Damage to oak species at all arboretum surveyed.  Each tree species was represented by 1-6 individuals at a given site.  Damage was estimated from 20 leaves per individual.  Some hybrid trees were surveyed but removed from further analysis.  chew = proportion (leaf area) chewing damage
DOI: 10.5061/dryad.6023qs3k/3
title: Input_file_randomisation: wild boar genotypes

description: INput file required by the ransomisation script (1000 random straight lines)
DOI: 10.5061/dryad.6023qs3k/4
title: Input_file_randomisation: wild boar pairwise kinship values

description: Input file required by the ransomisation script (1000 random straight lines)
DOI: 10.5061/dryad.633bk/16
title: Supplementary Tables

description: Supplementary tables
DOI: 10.5061/dryad.633bk/17
title: Fig_S1

description: FIGURE S1. Fraction of missing SNP calls in each individual.
DOI: 10.5061/dryad.633bk/18
title: Fig_S2

description: FIGURE S2. Number of 100-bp Illumina reads per individual. Individual labels refer to those used in Table S4 and Figure 5.
DOI: 10.5061/dryad.633bk/19
title: Fig_S3

description: FIGURE S3. STRUCTURE plots showing 10 in-group individuals for three replicated runs (‘rep’) using all available SNPs polymorphic in the ingroup lineages that mapped to the zebra finch genome (n = 9525) with K = 2 (upper panel) and K = 3 (lower panel).
DOI: 10.5061/dryad.633bk/20
title: Fig_S4

description: FIGURE S4. STRUCTURE plots showing 10 in-group individuals for three replicated runs (‘rep’) in which we excluded SNPs whose coverage amongst called individuals was greater than two standard deviations above the mean (n = 32,103) with K = 2 (upper panel) and K = 3 (lower panel).
DOI: 10.5061/dryad.633bk/22
title: Fig_S6

description: FIGURE S6. (a) Number of contigs mapped against zebra finch chromosomes plotted versus chromosome length; fewer contigs mapped against the Z chromosome (blue) than expected by chromosome length. (b) Number of contigs that contain a SNP with an ABBA or BABA pattern mapped against zebra finch chromosomes versus chromosome length; far fewer ABBA-BABA contigs mapped against the Z chromosome (blue) than expected by chromosome length. (c) Number of contigs that contain an ABBA or BABA pattern versus number of total contigs for each zebra finch chromosome they mapped against; fewer ABBA-BABA contigs mapped to the Z chromosome (blue) than expected. (d) Frequency plot giving the number of ABBA-BABA contigs mapped against each zebra finch chromosome per contigs mapped.
DOI: 10.5061/dryad.65v85/1
title: Genotype Data withn MHC  in CHSG Population (PED file)
DOI: 10.5061/dryad.65v85/2
title: Genotype Data withn MHC  in CHSG Population (MAP file)
DOI: 10.5061/dryad.6m11c/4
title: Data on Soil Eco-emzymatic activities-MS# 14-0189R1-EA-2014-08-10

description: Properties of Eco-emzymatic activities on C and P dynamics, in the experimental paddy field after 7 years of phosphorus application
DOI: 10.5061/dryad.6m11c/5
title: Data on Grain and Yield-MS# 14-0189R1-EA-2014-08-10

description: Ice grain yield and yield components from the experimental paddy field in 2011 and 2012.
DOI: 10.5061/dryad.6m11c/6
title: Data on Soil C Mineralization-MS# 14-0189R1-EA-2014-08-10

description: Soil biochemical propoiety on C Mineralization for samples collected from the experimental paddy field after 7 years of phosphorus application.
DOI: 10.5061/dryad.6m11c/7
title: Data on Soil microorganisms-MS# 14-0189R1-EA-2014-08-10

description: Bacterial community in soil for each P fertilized treatment and the relative number of sequences of the detected bacteria that are involved in the carbon (C) cycle in paddy field soil
DOI: 10.5061/dryad.7g902/1
title: 2250_1_supp_0_my0clf
DOI: 10.5061/dryad.7g902/2
title: Mangano Supplemental Data1
DOI: 10.5061/dryad.7g902/3
title: Mangano Supplemental Data2
DOI: 10.5061/dryad.8c26c/1
title: Patella ulyssiponensis allozyme data
DOI: 10.5061/dryad.8c26c/2
title: Patella_rustica_allozyme_data
DOI: 10.5061/dryad.b911r/3
title: individual microsatellite markers and spatial coordinates JC2006

description: Individual genotypes and spatial coordinates for all individuals sampled in the patch network JC in 2006.
DOI: 10.5061/dryad.f5q32/2
title: Presence points used for Species Distribution Models
DOI: 10.5061/dryad.g08c7/7
title: Results_Popoolation
DOI: 10.5061/dryad.g08c7/8
title: Topd

description: In this file we present results from analyses of phylogenetic topologies performed with the Topd software. We analysed gene specific phylogenies derived from RADs data. Each phylogeny was compared against two other trees, one showing the parallel evolution of the ecotypes (PE) and one showing a single origin of them (SO). We present the nodal distances to each of these trees as well as the results of a random analyses carried to determine if the phylogenies are more similar than expected by chance.
DOI: 10.5061/dryad.j1r30/1
title: Follow up Dryad revised

description: Data from follow up study of mental health on Navy personnel
DOI: 10.5061/dryad.j7737/3
title: Time-depth recorders attached to chick-rearing murres in 2007

description: Raw text files generated by Lotek download software. After a preamble including the logger serial number, the data file presents three columns: the time & date, the temperature in degrees Celsius and the pressure in psi. To convert psi into approximate depth, multiply by 0.705. The text files are organized into three folders representing the different deployments. Each file name has the last five digits of the band number (the band number started with 996, which was dropped for simplification in the field) of the individual bird to whom the TDR was attached. The band number serves as the identifier to relate it to the meta-data file that includes sex, age and other attributes of the bird. In some cases, additional information (e.g. site location) were included in the file name to simplify work in the field, but that is not needed to uniquely identify the bird.
DOI: 10.5061/dryad.j7737/4
title: Accelerometers attached to chick-rearing murres in 2010, Part 1

description: Accelerometer files produced by Little Leonardo accelerometers. Each subfolder has the last five digits of the band number of the individual murre to whom the accelerometer was attached, and serves as the unique identifier to cross-reference with other information (sex, age, etc.). Within each folder, there are five files: the raw data (obj) file and a text file for the temperature log (in degrees C, every 1 s), depth (in m, every 1 s) and acceleration in the X and Y directions, in 32 Hz increments.
DOI: 10.5061/dryad.j7737/5
title: Accelerometers attached to chick-rearing murres in 2010, Part 2

description: Accelerometer files produced by Little Leonardo accelerometers. Each subfolder has the last five digits of the band number of the individual murre to whom the accelerometer was attached, and serves as the unique identifier to cross-reference with other information (sex, age, etc.). Within each folder, there are five files: the raw data (obj) file and a text file for the temperature log (in degrees C, every 1 s), depth (in m, every 1 s) and acceleration in the X and Y directions, in 32 Hz increments.