cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.45tm5a
title: Occurrence Download

description: A dataset containing 3322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neslia paniculata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 3322 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001590-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/dv9dcm
title: Replication Data for: Molecular Epidemiology of Human Metapneumovirus in Kilifi, Coastal Kenya, 2016-2017 and 2021-2024

description: &lt;p&gt;This is a replication dataset for the manuscript titled: "&lt;strong&gt;&lt;i&gt;Molecular Epidemiology of Human Metapneumovirus in Coastal Kenya (2016-2024)&lt;/i&gt;&lt;/strong&gt;."&lt;/p&gt;

&lt;p&gt;The datasets are part of ongoing surveillance either in the outpatient and community within the KHDSS in coastal Kenya. Dataset1 shows individual case data with demographic characteristics (age, sex etc.) and clinical characteristics (including symptoms status, fever, cough among others). Dataset2 contains individual case data with genomic characteristics (variant, nextclade lineage and genome coverage).&lt;/p&gt;
description: <strong>The datasets will become open for download once the corresponding manuscript is published.</strong>
DOI: 10.11588/duerer.online.697c72a3047ee
title: Der heilige Christophorus, https://d-nb.info/gnd/1194581994
DOI: 10.5880/gfz.c3s_twsa_v1.0
title: C3S Globally Gridded Terrestrial Water Storage Anomalies

description: GRACE/GRACE-FO-derived time series of gridded terrestrial water storage anomalies with respect to the mean over the period 2003-01 - 2022-12. 
 
The product is based on monthly COST-G RL02 GRACE/GRACE-FO Level-2B Products ( Meyer et al., 2025, doi: 10.5880/COST-G.ICGEM_02_L2) provided at 0.5° latitude-longitude grids as defined over all continental regions. The TWS anomaly grids are provided in NetCDF format, containing three different variables: 
 
 1) 'twsa': gravity-based terrestrial water storage anomaly 
 2) 'std_twsa': gravity-based terrestrial water storage anomaly standard deviations 
 3) 'flag_filter': Flag indicating the filter strength 
 
 
File History: 
 
The Copernicus Climate Change Service (C3S) groups its datasets into Climate Data Records (CDRs), representing major version releases, and Intermediate Climate Data Records (ICDRs), which only extend the existing data and do not involve any processing changes. 
 
12 September 2025: 
CDR: C3S_TWSA_GLOBAL_MONTHLY_200204_202503_v1.0.nc 
 
Data set covering April 2002 to March 2025 
5 January 2026: 
 
ICDR: C3S_TWSA_GLOBAL_MONTHLY_200204_202509_v1.0.nc 
Data set covering April 2002 to September 2025
DOI: 10.15468/dl.y6kbkv
title: Occurrence Download

description: A dataset containing 13890977 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oreochromis niloticus, Oreochromis mossambicus, Anguilla anguilla, Dicentrarchus labrax, Gobius paganellus, Ctenopharyngodon idella, Chanos chanos, Labeo rohita, Alosa alosa, Alosa immaculata, Scomberomorus sinensis, Lutjanus fuscescens, Lutjanus jocu, Lutjanus maxweberi, Polyodon spathula, Megalops cyprinoides, Coregonus albula, Coregonus lavaretus, Coregonus oxyrinchus, Coregonus clupeaformis, Coregonus artedi, Salmo salar, Clarias jaensis, Salmo trutta, Oncorhynchus mykiss, Oncorhynchus gorbuscha, Oncorhynchus keta, Oncorhynchus masou, Oncorhynchus nerka, Oncorhynchus tshawytscha, Oncorhynchus kisutch, Salvelinus fontinalis, Salvelinus alpinus, Salvelinus namaycush, Plecoglossus altivelis, Mallotus villosus, Osmerus mordax, Hypomesus olidus, Thaleichthys pacificus, Esox lucius, Lutjanus fulvus, Colossoma macropomum, Lutjanus griseus, Abramis brama, Tinca tinca, Carassius carassius, Carassius auratus, Rutilus rutilus, Hypophthalmichthys molitrix, Hypophthalmichthys nobilis, Notemigonus crysoleucas, Osteochilus vittatus, Anchoa curta, Rastrineobola argentea, Parabramis pekinensis, Pelecus cultratus, Megalobrama amblycephala, Barbonymus gonionotus, Silurus glanis, Ictalurus punctatus, Ameiurus melas, Pangasius pangasius, Clarias fuscus, Anguilla japonica, Anguilla rostrata, Anguilla australis, Muraenesox cinereus, Hyporhamphus sajori, Lota lota, Eleginus nawaga, Eleginus gracilis, Microgadus tomcod, Joturus pichardi, Eleutheronema tetradactylum, Channa striata, Channa micropeltes, Centropomus undecimalis, Lates calcarifer, Lates niloticus, Morone saxatilis, Morone americana, Perca fluviatilis, Perca flavescens, Sander lucioperca, Clarias anguillaris, Pomadasys argenteus, Sillaginopsis panijus, Argyrosomus hololepidotus, Pseudotolithus elongatus, Drepane punctata, Cichla ocellaris, Anabas testudineus, Osphronemus goramy, Trichopodus pectoralis, Helostoma temminckii, Anchoa parva, Anchoa spinifer, Anchoa walkeri, Anchoa mitchilli, Anchovia surinamensis)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13890977 records from 2452 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001552-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ed9pse
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Martialia hyadesi",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 10",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001213-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6e3tmh
title: Occurrence Download

description: A dataset containing 2329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctous alpina",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 2329 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001214-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17643024
title: How complex must shape data be to model in vivo forces? Intraspecific level validation of in silico jaw strength estimates in a lizard

description: A dataset to accompany paper 'How complex must shape data be to model in vivo forces? Intraspecific level validation of in silico jaw strength estimates in a lizard', Stephanie C. Woodgate, Ana Pérez-Cembranos, Valentín Pérez-Mellado, Johannes Müller, J Exp Biol 2026; jeb.251313. doi: https://doi.org/10.1242/jeb.251313.

File structure and contents described in 'P_PITYUSENSIS_IN_SILICO_READ_ME' file. Dataset contains left mandible specimen meshes with collections information specified in corresponding 'Specimen_Collections_information.xlsx' document. Dataset also contains landmark files generated from specimens, warp meshes representing average shape of specimens from each location and the R script used for analysis. All files shared under a 'Creative Commons Attribution Non Commercial Share Alike 4.0 International' License.

Some meshes uploaded to MorphoSource under project ID: 000786677.
DOI: 10.5281/zenodo.17643025
title: How complex must shape data be to model in vivo forces? Intraspecific level validation of in silico jaw strength estimates in a lizard

description: A dataset to accompany paper 'How complex must shape data be to model in vivo forces? Intraspecific level validation of in silico jaw strength estimates in a lizard', Stephanie C. Woodgate, Ana Pérez-Cembranos, Valentín Pérez-Mellado, Johannes Müller, J Exp Biol 2026; jeb.251313. doi: https://doi.org/10.1242/jeb.251313.

File structure and contents described in 'P_PITYUSENSIS_IN_SILICO_READ_ME' file. Dataset contains left mandible specimen meshes with collections information specified in corresponding 'Specimen_Collections_information.xlsx' document. Dataset also contains landmark files generated from specimens, warp meshes representing average shape of specimens from each location and the R script used for analysis. All files shared under a 'Creative Commons Attribution Non Commercial Share Alike 4.0 International' License.

Some meshes uploaded to MorphoSource under project ID: 000786677.
DOI: 10.5061/dryad.r9q30g0
title: Data from: An inconvenient truth about xylem resistance to embolism in the model species for refilling Laurus nobilis L.

description: Direct, non-invasive X-ray microtomography and optical technique
 observations applied in stems and leaves of intact seedlings revealed that
 laurel is highly resistant to drought-induced xylem embolism. Contrary to
 what has been brought forward, daily cycles of embolism formation and
 refilling are unlikely to occur in this species and to explain how it
 copes with drought. There has been considerable controversy regarding
 xylem embolism resistance for long-vesselled angiosperm species and
 particularly for the model species for refilling (Laurus nobilis L.). The
 purpose of this study was to resolve the hydraulic properties of this
 species by documenting vulnerability curves of different organs in intact
 plants. Here, we applied a direct, non-invasive method to visualize xylem
 embolism in stems and leaves of intact laurel seedlings up to 2-m tall
 using X-ray microtomography (microCT) observations and the optical
 vulnerability technique. These approaches were coupled with complementary
 centrifugation measurements performed on 1-m long branches sampled from
 adult trees and compared with additional microCT analyses carried out on
 80-cm cut branches. Direct observations of embolism spread during
 desiccation of intact laurels revealed that 50% loss of xylem conductivity
 (Ψ50) was reached at − 7.9 ± 0.5 and − 8.4 ± 0.3 MPa in stems and leaves,
 respectively, while the minimum xylem water potentials measured in the
 field were − 4.2 MPa during a moderate drought season. Those findings
 reveal that embolism formation is not routine in Laurus nobilis contrary
 to what has been previously reported. These Ψ50 values were close to those
 based on the flow-centrifuge technique (− 9.2 ± 0.2 MPa), but at odds with
 microCT observations of cut branches (− 4.0 ± 0.5 MPa). In summary,
 independent methods converge toward the same conclusion that laurel is
 highly resistant to xylem embolism regardless its development stage. Under
 typical growth conditions without extreme drought events, this species
 maintains positive hydraulic safety margin, while daily cycles of embolism
 formation and refilling are unlikely to occur in this species.
description: Xylem embolism
 resistance in Laurus nobilis L.This file contains the
 dataset used in this paper. It refers to microCT and optical observations,
 centrifugation measurements and seasonal minimum midday water potential
 monitoring.Lamarque et al 2018 AFS_raw
 data.xlsx
DOI: 10.5281/zenodo.18384454
title: Data for Measurement report Long-term Online Measurements Reveal the Evolution and Driving Mechanisms of Brown Carbon Absorption in the Yangtze River Delta
DOI: 10.5281/zenodo.18384455
title: Data for Measurement report Long-term Online Measurements Reveal the Evolution and Driving Mechanisms of Brown Carbon Absorption in the Yangtze River Delta
DOI: 10.15468/dl.gwypp7
title: Occurrence Download

description: A dataset containing 14711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Adinetidae, Brachionidae, Gastropodidae, Dicranophoridae, Asplanchnidae, Euchlanidae, Proalidae, Notommatidae, Philodinidae, Collothecidae, Lepadellidae, Conochilidae, Trichocercidae, Epiphanidae, Trochosphaeridae, Flosculariidae, Habrotrochidae, Hexarthridae, Ituridae, Lecanidae, Lindiidae, Mytilinidae, Trichotriidae, Microcodidae, Philodinavidae, Synchaetidae, Testudinellidae, Scaridiidae, Tetrasiphonidae, Centropagidae, Diaptomidae, Cyclopidae, Halicyclopidae, Lernaeidae, Canthocamptidae, Ameiridae, Laophontidae, Phyllognathopodidae, Miraciidae, Ergasilidae, Daphniidae, Moinidae, Bosminidae, Chydoridae, Macrothricidae, Ilyocryptidae, Neothricidae)",
 "Geometry POLYGON ((-181.131592 -37.12775, -187.78141 -33.078885, -189.068184 -33.987495, -186.411552 -37.925243, -192.774353 -44.251839, -195.387383 -46.345032, -192.379532 -48.31083, -188.062592 -45.989329, -183.377609 -41.69727, -180.416107 -38.542795, -181.131592 -37.12775))"
 ]
}

 The dataset includes 14711 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001215-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebn257
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Grus japonensis",
 "Year 2023-2024"
 ]
}

 The dataset includes 308 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001216-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6r4k5m
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mesonychoteuthis hamiltoni",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 10",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001217-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7p2cd
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "TaxonKey is Lutra lutra"
 ]
}

 The dataset includes 147 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001218-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24001738.v1
title: Genomic and epidemiological perspectives on the first local sporadic cases of Mpox in China

description: From June 7th to 11th, 2023, eight cases of Mpox were identified in Guangzhou, China. This is the first report of multiple local sporadic cases after the imported case in Chongqing, China. Epidemiological investigation revealed that these cases had no history of international travel and no connections with each other. Haplotype network and phylogenetic analyses indicated that the possible origin is likely from Japan, although the direct origin may remain uncertain due to limited genomic sequences and sampling bias in GISAID. The three Guangzhou sequences have accumulated several novel mutations, suggesting the local transmission of Mpox may have been ongoing for some time. Based on the daily cases during the early stage of Mpox outbreak in four other countries, the number of possible infected cases in Guangzhou is inferred to be more than 300, suggesting that swift and efficient control measures must be implemented to mitigate the risk of a potential epidemic.
DOI: 10.5061/dryad.nj383
title: Data from: The phenology-substrate-match hypothesis explains decomposition rates of evergreen and deciduous oak leaves.

description: 1. There is substantial evidence that the rate of litter decomposition is
 affected by the match between the litter substrate and the soil matrix
 (decomposer community). We introduce and test the
 phenology-substrate-match hypothesis, which predicts that both litter
 composition and soil matrix will change over the course of the year, and
 that a lagged match between litter type and soil matrix will result in an
 optimal decomposition environment. 2. We conducted a decomposition
 experiment in a Mediterranean mixed deciduous-evergreen oak savanna in
 California. We initiated litter decomposition of both a deciduous oak
 (whose leaves fall in autumn) and an evergreen oak (whose leaves fall in
 spring) in both autumn and spring. 3. Consistent with the
 phenology-substrate-match hypothesis, we found that decomposition of
 deciduous oak litter was accelerated compared to evergreen oak litter when
 decomposition was initiated in spring, while evergreen litter was
 accelerated compared to deciduous litter when decomposition was initiated
 in autumn. 4. We also found a small effect of microsite on leaf
 decomposition, where both evergreen and deciduous oak leaves decomposed
 faster under the canopy of a conspecific. 5. Synthesis: Our study extends
 theory of litter quality and the decomposer community into a temporal
 context which may be an important source of variation in decomposition
 rates when species with different litterfall phenologies co-occur.
description: quail ridge k
 valuesK values describing
 decomposition rates of oak species at Quail Ridge in California.
 Decomposition was initiated at two different times of
 year.litter mass loss from
 two oak specieslitter mass loss curves
 of two oak species t Quali Ridge in California. Decomposition was
 initiated at two times of year. These data were used to calculate K values
 provided in the accompanying file.quail ridge oak
 decomp.csv
DOI: 10.5061/dryad.mf7hk2q
title: Data from: Postmortem neurodegenerative markers and trajectories of decline in cognitive systems

description: Objective: To assess whether neurodegenerative pathologies are
 differentially related to trajectories of change in different cognitive
 abilities. Methods: At annual intervals for up to 21 years, 915 older
 participants in a longitudinal clinical-pathologic cohort study completed
 a battery of 15 tests from which previously established composite measures
 of episodic memory, semantic memory, working memory, and perceptual speed
 were derived. At death, they underwent a neuropathologic examination to
 quantify Alzheimer’s disease (AD) pathology, Lewy bodies, transactive
 response DNA-binding protein 43 (TDP-43) pathology, and hippocampal
 sclerosis plus multiple markers of cerebrovascular disease. Time-varying
 effect models were used to assess change over time in the relation of
 neuropathologic markers to cognitive trajectories. Results: Controlling
 for pathology, decline in perceptual speed was evident about 15 years
 before death; modest decline in semantic and working memory occurred
 later; and there was little change in episodic memory. Each
 neurodegenerative marker was associated with lower episodic memory
 function beginning about 10 to16 years before death. As time before death
 decreased, AD pathology, Lewy bodies, and hippocampal sclerosis were
 associated with impairment in other cognitive domains but the association
 of TDP-43 pathology with cognition continued to be mainly confined to
 episodic memory. Conclusions: The results suggest that episodic memory
 impairment is an early sign of multiple neurodegenerative conditions which
 primarily differ in their associations with other cognitive systems.
description: Supplementary Table
 e-1PDFtable
 e-1.pdf
DOI: 10.6084/m9.figshare.29878849
title: Plasmid-driven clonal expansion of multidrug-resistant monophasic <i>Salmonella</i> Typhimurium in a Global Food Trade Hub

description: Shenzhen, a major port city with a heavily imported food supply, offers a critical setting to examine the spread and adaptation of multidrug-resistant <i>Salmonella</i> 1,4,[5],12:i: – (<i>S.</i> 1,4,[5],12:i:-). This study integrates 17 years of genomic, epidemiological, and food safety data. We explored the serovar’s population structure, antibiotic resistance gene (ARG) patterns, and transmission dynamics locally and globally. Our analyses revealed substantial rise in <i>S</i>. 1,4,[5],12:i: – prevalence among non-typhoidal <i>Salmonella</i> isolates over the past 17 years, from 2.27% in 2007 to 24.79% in 2023. <i>S</i>. 1,4,[5],12:i: – was predominated by ST34 (97.9%), with high genotypic resistance to aminoglycosides (100%), tetracyclines (96.6%), β-lactams (89.3%), and sulphonamides (88.5%). Phylogenetic analysis separated <i>S.</i> 1,4,[5],12:i: – into four clades. Clade 4, first detected in Shenzhen in 2013, emerged as the predominant lineage by 2023 (56.9%). This clade exhibited minimal genetic diversity (≤ 38 core SNPs), with adaptive traits linked to the acquisition of resistance-associated plasmids. Notably, plasmid-driven ARGs, including carbapenem resistance genes, have emerged as a growing concern. Transmission analysis identified two key transmission dynamics: transient outbreaks primarily involving food handlers and persistent lineages sustained through local and international spread, often facilitated by the food supply chain. These findings underscore the role of occupational carriers and imported food products in the dissemination of ARGs, emphasizing the need for enhanced surveillance and improved health and hygiene practices for food handlers. This study provides a comprehensive molecular epidemiological framework for addressing multidrug-resistant <i>Salmonella</i> in globalized urban food hubs, offering a foundation for future surveillance and control efforts.
DOI: 10.6084/m9.figshare.29878849.v1
title: Plasmid-driven clonal expansion of multidrug-resistant monophasic <i>Salmonella</i> Typhimurium in a Global Food Trade Hub

description: Shenzhen, a major port city with a heavily imported food supply, offers a critical setting to examine the spread and adaptation of multidrug-resistant <i>Salmonella</i> 1,4,[5],12:i: – (<i>S.</i> 1,4,[5],12:i:-). This study integrates 17 years of genomic, epidemiological, and food safety data. We explored the serovar’s population structure, antibiotic resistance gene (ARG) patterns, and transmission dynamics locally and globally. Our analyses revealed substantial rise in <i>S</i>. 1,4,[5],12:i: – prevalence among non-typhoidal <i>Salmonella</i> isolates over the past 17 years, from 2.27% in 2007 to 24.79% in 2023. <i>S</i>. 1,4,[5],12:i: – was predominated by ST34 (97.9%), with high genotypic resistance to aminoglycosides (100%), tetracyclines (96.6%), β-lactams (89.3%), and sulphonamides (88.5%). Phylogenetic analysis separated <i>S.</i> 1,4,[5],12:i: – into four clades. Clade 4, first detected in Shenzhen in 2013, emerged as the predominant lineage by 2023 (56.9%). This clade exhibited minimal genetic diversity (≤ 38 core SNPs), with adaptive traits linked to the acquisition of resistance-associated plasmids. Notably, plasmid-driven ARGs, including carbapenem resistance genes, have emerged as a growing concern. Transmission analysis identified two key transmission dynamics: transient outbreaks primarily involving food handlers and persistent lineages sustained through local and international spread, often facilitated by the food supply chain. These findings underscore the role of occupational carriers and imported food products in the dissemination of ARGs, emphasizing the need for enhanced surveillance and improved health and hygiene practices for food handlers. This study provides a comprehensive molecular epidemiological framework for addressing multidrug-resistant <i>Salmonella</i> in globalized urban food hubs, offering a foundation for future surveillance and control efforts.