cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14504828
title: Docking simulations of G-protein coupled receptors uncover crossover binding patterns of diverse ligands to angiotensin, alpha-adrenergic and opioid receptors: Implications for addiction

description: Raw data sets for Figures 1-7 for manuscript Docking simulations of G-protein coupled receptors uncover crossover binding patterns of diverse ligands to angiotensin, alpha-adrenergic and opioid receptors: Implications for addiction.
DOI: 10.5281/zenodo.14504829
title: Docking simulations of G-protein coupled receptors uncover crossover binding patterns of diverse ligands to angiotensin, alpha-adrenergic and opioid receptors: Implications for addiction

description: Raw data sets for Figures 1-7 for manuscript Docking simulations of G-protein coupled receptors uncover crossover binding patterns of diverse ligands to angiotensin, alpha-adrenergic and opioid receptors: Implications for addiction.
DOI: 10.6084/m9.figshare.c.3291326_d133.v1
title: python file for critical structure of complement factor H sushi domain 15 readable in UCSF Chimera session

description: critical foldability structure for the UCSF Chimera (Python)
DOI: 10.6084/m9.figshare.c.3273731_d2.v1
title: Curated dataset with data and metadata from relevant cyanobacterial strains listed in the online database CyanoType

description: This is a curated dataset comprising a list of relevant cyanobacterial strains for taxonomy and phylogenomics studies, with useful information for each strain.
DOI: 10.6084/m9.figshare.c.3273731_d4.v1
title: 16S rRNA gene sequences alignment of a subset of relevant cyanobacterial strains

description: Alignment (Fasta file) of a subset of 16S rRNA gene sequences from cyanobacterial strains included in the online database CyanoType
DOI: 10.6084/m9.figshare.c.3493548_d35.v1
title: Zipped analysis data files of mother cells cultured at 27C

description: A .zip file containing analysis data files (.txt) of mother cells cultured at 27C (after manual correction of erroneous segmentations)
DOI: 10.6084/m9.figshare.4570372.v1
title: data_2013.txt

description: Capture Recapture dataset collected from an intensive monitoring of the marbled newt in a breeding pond located in wester France (Loire Atlantique), near the village of Vigneux de Bretagne. A total of 713 newts (412 males and 301 females) were marked over a breeding season in 2013.<br>
DOI: 10.6084/m9.figshare.c.3662366_d804
title: Full body CT scan of a Prionace glauca (ZMA.PISC.116203)

description: This file includes 1873 DICOM files of a female Prionace glauca specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.116203. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d805
title: Full body CT scan of an Alopias vulpinus (ZMA.PISC.116876)

description: This file includes 2799 DICOM files of a female Alopias vulpinus specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.116876. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d59.v1
title: Full body CT scan of a Triakis semifasciata (RMNH.PISC.4298)

description: This file includes 1527 DICOM files of a male Triakis semifasciata specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.4298. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d806
title: Full body CT scan of a Mustelus asterias (ZMA.PISC.120789)

description: This file includes 1314 DICOM files of a male Mustelus asterias specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.120789. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d809
title: Full body CT scan of a Chiloscyllium arabicum (ZMA.PISC.140443)

description: This file includes 1124 DICOM files of a male Chiloscyllium arabicum specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.140443. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d812
title: Full body CT scan of a Scyliorhinus stellaris (RMNH.PISC.24037)

description: This file includes 1918 DICOM files of a male Scyliorhinus stellaris specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.24037. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d786
title: CT scan of head & fins of a Carcharhinus melanopterus (ZMA.PISC.111010)

description: This file includes 872 DICOM files of a Carcharhinus melanopterus specimen and comprises the head, pectoral fins and caudal fin. The specimen is housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.111010. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d737
title: Full body CT scan of a Scymnodalatia albicauda (RMNH.PISC.37980)

description: This file includes 1867 DICOM files of a female Scymnodalatia albicauda specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.37980. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d733
title: Full body CT scan of a Sphyrna tiburo (RMNH.PISC.37209)

description: This file includes 869 DICOM files of a male Sphyrna tiburo specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.37209. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d739
title: Full body CT scan of a Scyliorhinus canicula (RMNH.PISC.4166)

description: This file includes 1147 DICOM files of a female Scyliorhinus canicula specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.4166. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d746
title: CT scan of the head of a Sphyrna zygaena (RMNH.PISC.4206)

description: This file includes 284 DICOM files of the head of a Sphyrna zygaena specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.4206. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d726
title: Full body CT scan of an Atelomycterus macleayi (RMNH.PISC.34078.b)

description: This file includes 925 DICOM files of a female Atelomycterus macleayi specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.34078.b. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d736
title: Full body CT scan of an Isistius brasiliensis (RMNH.PISC.37689)

description: This file includes 755 DICOM files of a female Isistius brasiliensis specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.37689. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d727
title: Full body CT scan of a Scyliorhinus canicula (RMNH.PISC.34107)

description: This file includes 594 DICOM files of 2 specimens. The left specimen is a female Scyliorhinus canicula housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.34107. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d724
title: Full body CT scan of a Squalus megalops (RMNH.PISC.34046)

description: This file includes 648 DICOM files of a male Squalus megalops specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.34046. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d719
title: Full body CT scan of an Atelomycterus marmoratus (RMNH.PISC.34024.b)

description: This file includes 1153 DICOM files of a male Atelomycterus marmoratus specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.34024.b. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d722
title: CT scan of the head of a Prionace glauca (RMNH.PISC.34044)

description: This file includes 516 DICOM files of the head of a Prionace glauca specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.34044. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d707
title: Full body CT scan of a Squatina squatina (RMNH.PISC.24047)

description: This file includes 2177 DICOM files of a male Squatina squatina specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.24047. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d717
title: Full body CT scan of an Atelomycterus marmoratus (RMNH.PISC.33990)

description: This file includes 576 DICOM files of a female Atelomycterus marmoratus specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.33990. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d720
title: Full body CT scan of a Halaelurus boesemani (RMNH.PISC.34025)

description: This file includes 531 DICOM files of a male Halaelurus boesemani specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.34025. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.57967/hf/3821
title: ms_ninespecies_benchmark
DOI: 10.6084/m9.figshare.c.3662366_d749.v1
title: Full body CT scan of a Squalus suckleyi (RMNH.PISC.4322)

description: This file includes 1639 DICOM files of a male Squalus suckleyi specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.4322. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d746.v1
title: CT scan of the head of a Sphyrna zygaena (RMNH.PISC.4206)

description: This file includes 284 DICOM files of the head of a Sphyrna zygaena specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.4206. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d740.v1
title: Full body CT scan of a Chiloscyllium griseum (RMNH.PISC.4184)

description: This file includes 1036 DICOM files of a male Chiloscyllium griseum specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.4184. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d743.v1
title: Full body CT scan of an Eusphyra blochii (RMNH.PISC.4204)

description: This file includes 875 DICOM files of a male Eusphyra blochii specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.4204. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3662366_d764.v1
title: Full body CT scan of a Galeorhinus galeus (RMNH.PISC.verznr.3)

description: This file includes 2936 DICOM files of a female Galeorhinus galeus specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber RMNH.PISC.verznr.3. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.6084/m9.figshare.c.3682042_d16.v1
title: Raw transcriptome assembly of Alpine mountain hares

description: Data citation 2: Raw assembly of RNA-sequencing reads from mountain hares sampled in the Alps.
DOI: 10.6084/m9.figshare.c.3682042_d18.v1
title: Curated transcriptome assembly (peptides)

description: Data citation 2: Curated mountain hare transcriptome assembly fasta file (peptides).
DOI: 10.6084/m9.figshare.c.3706687_d1.v1
title: Whistle Measurements

description: Excel spreadsheet detailing the corresponding measurements for each dolphin whistle
DOI: 10.6084/m9.figshare.c.3706849_d51.v1
title: HiWATER: The Multi-Scale Observation Experiment on Evapotranspiration over heterogeneous land surfaces (MUSOEXE) Dataset- flux observation matrix (an eddy covariance system at Huazhaizi desert steppe Station)

description: HiWATER: The Multi-Scale Observation Experiment on Evapotranspiration over heterogeneous land surfaces (MUSOEXE) Dataset- flux observation matrix (an eddy covariance system at Huazhaizi desert steppe Station)
DOI: 10.6084/m9.figshare.c.3681778_d3.v1
title: Data Citation 1: The qRT-PCR data for expression of GRs, MR and RPL7 in tissues of MR-KO and WT adult (200 days post-fertilization) medaka

description: Data for mRNA levels of GRs, MR and rpl7 are shown as means of triplicate (arbitrary units). The GR mRNA levels are normalized using rpl7 mRNA levels and shown in Figure 1
DOI: 10.6084/m9.figshare.c.3581339_d3.v1
title: Genes differentially regulated by VEGF-A and VEGF-C156S

description: List of genes which are differentially regulated by VEGF-A and VEGF-C156S stimulation
DOI: 10.6084/m9.figshare.c.3722644_d1.v1
title: Modern pollen data from the Canadian Arctic, 1972-1973

description: This datasets shows the results of a 1972-73 baseline study of modern pollen deposition in the Canadian Arctic, using static pollen samplers (Tauber and Benninghoff samplers) and moss and lichen polsters. The uploaded xls file shows site and sample information, the pollen count data obtained at the final pollen sum, and the count data for Pinus and Picea pollen for an entire slide (SPIN and SPIC). The pollen data are given for two sampling periods, June to August 1972 and August 1972 - August 1973.
DOI: 10.6084/m9.figshare.c.3727411_d1.v1
title: Example CellProfiler pipeline for the image analysis of the lung cancer cell bioreactor cultures

description: Example CellProfiler pipeline for the image analysis of the breast cancer cell (MCF7) bioreactor culture samples (also uploaded to this figShare record under "ZIP-file of fluorescent (widefield) images of bioreactor breast cancer cell cultures"). To use this pipeline it should be opened with CellProfiler and the file paths in the first module "Images" (which loads the input images) should be adapted to reflect the location of the images, as well as the output paths in the modules "ExportToSpreadSheet" and "SaveImages".
DOI: 10.6084/m9.figshare.c.3727411_d339.v1
title: Example CellProfiler pipeline for the image analysis of the lung cancer cell floater cultures

description: Example CellProfiler pipeline for the image analysis of the lung cancer cell (NCI) floater culture samples (also uploaded to this figShare record under "ZIP-file of fluorescent images of floater lung cancer cell cultures"). To use this pipeline it should be opened with CellProfiler and the file paths in the first module "Images" (which loads the input images) should be adapted to reflect the location of the images, as well as the output paths in the modules "ExportToSpreadSheet" and "SaveImages".
DOI: 10.6084/m9.figshare.c.3727411_d4.v1
title: Example CellProfiler pipeline for the image analysis of the breast cancer cell floater cultures

description: Example CellProfiler pipeline for the image analysis of the breast cancer cell (MCF7) floater culture samples (also uploaded to this figShare record under "ZIP-file of fluorescent images of floater breast cancer cell mono(co)-cultures"). To use this pipeline it should be opened with CellProfiler and the file paths in the first module "Images" (which loads the input images) should be adapted to reflect the location of the images, as well as the output paths in the modules "ExportToSpreadSheet" and "SaveImages".
DOI: 10.6084/m9.figshare.c.3285353_d685.v1
title: HADCRUT4.2 temperature data

description: Matlab data file containing the GraphEM- infilled version of HadCRUT4.2
DOI: 10.6084/m9.figshare.c.3727411_d344.v1
title: MATLAB script: overview of the output

description: Details of the output generated by the script file entitled "MATLAB script for the image analysis of 3D image stacks of 3D multi-cellular spheroid cultures"
DOI: 10.6084/m9.figshare.c.3682042_d25
title: Annotated database of the mountain hare transcriptome

description: Data citation 2: Mountain hare transcriptome - annotated database file.
DOI: 10.6084/m9.figshare.c.3682042_d17
title: Curated transcriptome assembly (CDS)

description: Data citation 2: Curated mountain hare transcriptome assembly fasta file (CDS).
DOI: 10.6084/m9.figshare.c.3682042_d18
title: Curated transcriptome assembly (peptides)

description: Data citation 2: Curated mountain hare transcriptome assembly fasta file (peptides).
DOI: 10.6084/m9.figshare.c.3727411_d345.v1
title: RawData_3Dmatrix_Prostate_SD.xls

description: Raw data fluorescent growth curves 3D matrix prostate
DOI: 10.6084/m9.figshare.c.3682042_d29
title: Supplementary Tables

description: Data citation 2: Supplementary Tables 1-9.
DOI: 10.6084/m9.figshare.c.3729568_d4.v1
title: Complete data set for all the mice comprising the 810 genes screened

description: Results of the B16-F10 pulmonary metastasis screen for the 810 genes consisting of 13,426 individual mice.
DOI: 10.6084/m9.figshare.c.3727411_d353.v1
title: ZIP-file of fluorescent images of floater lung cancer cell cultures

description: ZIP-file containing widefield images from NCI (RFP) 3D mono- or co-cultures with cancer associated  fibroblasts or normal fibroblasts (GFP) grown as floaters. Images are RGB with the RFP, GFP, and brightfield channels represented by red, green, and gray colors, respectively. The pixelsize is 1.04 micron. Images are in TIF format.
DOI: 10.6084/m9.figshare.c.3729568_d3.v1
title: Complete listing of the mutant mouse genes screened and the associated allele information

description: A subset of genes (29) were screened as 2 different alleles and for 1 gene a total of 3 alleles have been screened. The different alleles were generally tm1a and tm1b to discern if there was any difference after cre-mediated excision of the critical exon and targeting cassette (for details of the EUCOMM/KOMP-CSD tm1a/tm1b allele nomenclature refer to Skarnes et al 9). In some instances, one allele was a point mutation and the other targeting the whole gene. ‘Screened gene’ is the gene name as it appears in Data Record 2, followed by the ‘full allele name’, ‘allele superscript’ and ‘allele MGI ID’ (where a record exists). The ‘unique identifier’ is the internal colony prefix that was used for tracking and is specific to the gene and allele within the institute. In some instances, there are multiple colony prefixes for the same gene and allele – this occurred when additional mice were generated for testing outside of the high-throughput screening project. ‘MGI Gene/Marker ID’ allows tracking of the gene independent of any change in gene name for which a number have changed. The ‘current symbol’ is the most recent gene name and ‘synonym screened’ is where the gene has since been changed at MGI (and also internally) so allows for cross checking to the original data. The full current gene name and feature annotation is listed together with the chromosomal location of the gene and the Ensembl ID.
DOI: 10.15468/dl.57qh8x
title: Occurrence Download

description: A dataset containing 2705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Trapa natans L.",
 "Year 2012-2024"
 ]
}

 The dataset includes 2705 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037483-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwk546
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((31.54777 12.54969,45.05124 12.54969,45.05124 30.33597,31.54777 30.33597,31.54777 12.54969))",
 "HasCoordinate is true",
 "TaxonKey is Bathypathes thermophila Chimienti, 2022"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037484-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.