cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27931557.v1
title: HG38_PD_PHannotations.xlsx

description: This submission contain gene annotations for an Illumina microarray (HorvathMammalMethylChip40) for the human genome (HG38) and the genomes of two species of bats, Phyllostomus discolor (HLphyDis3) and P. hastatus (TTU_PhHast_1.1). The array design is available from the Gene Expression Omnibus (GEO) at NCBI as platform GPL28271.The alignment was done using the QUASR package (Gaidatzis et al., 2015) with the assumption for bisulfite conversion treatment of the genomic DNA. For each species’ genome sequence, QUASR creates an in-silico-bisulfite-treated version of the genome. The set of nucleotide sequences of the designed probes, which includes degenerate base positions due to the bisulfite conversion, was expanded into a larger set of nucleotide sequences representing every possible combination of degenerate bases. We then ran QUASR (a wrapper for Bowtie2) with parameters -k 2 --strata --best -v 3 and bisulfite = "undir” to align the enlarged set of probe sequences to each prepared genome. From these files, we collected only alignments where the entire length of the probe perfectly matched to the genome sequence (i.e. the CIGAR string 50M and flag XM=0).Following the alignment, the CpGs were annotated based on the distance to the closest transcriptional start site using the Chipseeker package (Yu et al., 2015). A gff file with these was created using these positions, sorted by scaffold and position, and compared to the location of each probe in BAM format. We report probes whose variants only mapped to one unique locus in a particular genome. Genomic location of each CpG is categorized as intergenic, 3’ UTR, 5’ UTR, promoter region (minus 10 kb to plus 1000 bp from the nearest TSS), exon, or intron.The file includes the location of androgen sensitive sites as described by Sugrue et al. (2021).Gaidatzis, D., Lerch, A., Hahne, F., and Stadler, M.B. (2015). QuasR: quantification and annotation of short reads in R. Bioinformatics 31, 1130-1132.Sugrue, V. J., Zoller, J. A., Narayan, P., Lu, A. T., Ortega-Recalde, O. J., Grant, M. J., . . . Horvath, S. (2021). Castration delays epigenetic aging and feminizes DNA methylation at androgen-regulated loci. Elife, 10. doi:10.7554/eLife.64932Yu, G., Wang, L.G., and He, Q.Y. (2015). ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization. Bioinformatics 31, 2382-2383.
DOI: 10.6084/m9.figshare.5999225.v1
title: The Correlation between Aqueous Humor Flow and IOP Before and After Trabectome: Developing a Grading System to Quantify Flow

description: <b>Article full text</b> <br> The full text of this article can be found here<b>. </b>https://link.springer.com/article/10.1007/s40123-018-0127-9 <br> <b>Provide enhanced content for this article</b> <br> If you are an author of this publication and would like to provide additional enhanced content for your article then please contact <b>adisrapidplus@springer.com</b>. <br> The journal offers a range of additional features designed to increase visibility and readership. All features will be thoroughly peer reviewed to ensure the content is of the highest scientific standard and all features are marked as ‘peer reviewed’ to ensure readers are aware that the content has been reviewed to the same level as the articles they are being presented alongside. Moreover, all sponsorship and disclosure information is included to provide complete transparency and adherence to good publication practices. This ensures that however the content is reached the reader has a full understanding of its origin. No fees are charged for hosting additional open access content. <br> Other enhanced features include, but are not limited to: <br> • Slide decks • Videos and animations • Audio abstracts • Audio slides<br>
DOI: 10.6084/m9.figshare.8320595.v1
title: Silva et al. Raw Data

description: Raw data from assays to biocontrol <i>Aedes aegypti</i> larvae using the entomopathogenic nematode <i>H. indica</i> strain LPP35<br>
DOI: 10.17632/8pybv7t858
title: Research Questionnaire

description: Research Questionnaire The Effect Of Entrepreneurship Orientation, Artistic Orientation And Financial Literature On Business Performance
DOI: 10.3535/1nj-g9x-lwx
title: †Agraulos difformis (Angelin, 1851)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rl0-ztk-5nh
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t0p-e5n-xy8
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22094816.v1
title: miRNA analysis in skeletal myotube-derived EVs

description: miRNA data in skeletal myotube-derived extracellular vesicles. <br>
DOI: 10.17632/k7t62v5frv
title: Hundreds of independent midsize deletions mediate DNA loss in wild relatives of Red Jungle Fowl

description: To identify the presence and distribution of midsize
deletions in wild relatives of chicken using high-depth short-read genomic data.
DOI: 10.3535/jl5-zlf-8ne
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/ct5dpctpy9
title: CSDUST3: A radiation transport code for a dusty medium with 1-d planar, spherical or cylindrical geometry

description: Abstract The program solves the radiation transport problem in a dusty medium with one-dimensional planar, spherical or cylindrical geometry. It determines self-consistently the effects of multiple scattering, absorption, and re-emission of photons on the temperature of dust grains and the characteristics of the internal radiation field. The program can treat radiation field anisotropy, linear anisotropic scattering, and multi-grain components. The program output consists of the dust temperature distr... Title of program: CSDUST3 Catalogue Id: AAEJ_v2_0 [ABBQ] Nature of problem Infrared observations indicate the presence of dust grains in circumstellar envelopes, interstellar clouds, and galactic nuclei. Dust grains play an important role in the thermodynamics of these objects. Theoretical modeling of the transport of radiation through dust can aid in our understanding of the nature of these objects. To construct realistic models, the effects of multiple scattering, absorption, and re-emission of photons on the temperature of dust grains must be determined self-consist ... Versions of this program held in the CPC repository in Mendeley Data AAEJ_v2_0; CSDUST3; 10.1016/0010-4655(88)90047-1 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.22023/mdx.25872154.v2
title: Horizon 2020 PARTICIPATION Youth Survey.sav

description: The Horizon 2020 PARTICIPATION Youth Survey data set captures the attitudes and behaviours of young people at school in six European countries (Belgium, Greece, Italy, Poland, Romania, UK) during 2021-2022. It includes variables related to attitudes towards violent extremism, gender equality, conspiracy theories, and online engagement, among other factors. This data set provides valuable insights into social polarisation and vulnerabilities to violent extremism and radicalisation among young people in Europe.
DOI: 10.3535/caj-be5-5hg
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p5q-3w7-hlx
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26147494.v3
title: Anthropometric and Spatiotemporal gait parameters of Ghanaian university students.

description: This study introduces an improved method for gait analysis and clinical decision-making, addressing the lack of normative spatiotemporal gait data for young Ghanaian adults. A dataset comprising 300 individuals (213 males, 87 females; aged 20.40 9 ±1.62years; height 1.69 ±0.12m; weight 64.51 ±10.68kg) wearing six Magneto Inertial Measurement Units (MIMU) sensors was collected during walking trials on a specified path at self-selected speeds (6.14±1.79 seconds).
DOI: 10.6084/m9.figshare.978657.v1
title: Logistic regression analysis of ICH by sex in both the eastern and western groups

description: ORs:odds ratios 
95%CI: 95% confidence interval
DOI: 10.17632/3nt652dwwx
title: Data for: Global Climate Data Processing and Mapping of Degradation Mechanisms and Degradation Rates of PV Modules

description: Description: Worldwide mapping of Degradation Mechanisms and Total degradation rate for a specific mono c-Si PV module. Data for the accepted paper "Global Climate Data Processing and Mapping of Degradation Mechanisms and Degradation Rates of PV Modules" in Energies MDPI. Paper accepted date: 6 December 2019 Julián Ascencio-Vásquez 1,*, Ismail Kaaya 2,3, Kristijan Brecl 1, Karl-Anders Weiss 2 and Marko Topič 1 1 Faculty of Electrical Engineering, University of Ljubljana, Tržaška cesta 25, 1000 Ljubljana, Slovenia; 2 Fraunhofer Institute of Solar Energy, Heidenhofstr. 2, 79110 Freiburg im Breisgau, Germany; 3 School of industrial engineering, University of Malaga, 29016 Malaga, Andalucia, Spain * Correspondence: julian.ascencio@fe.uni-lj.si
DOI: 10.3535/jrh-m3c-my6
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zn1-flg-lfm
title: Favosites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15172734.v1
title: When forests take over after land abandonment: dissolved organic matter response in headwater mountain streams

description: Dataset from the paper: Estévez E, Álvarez-Martínez JM, Dittmar T, Barquín J and Singer G (2021) When Forests Take Over After Land Abandonment: Dissolved Organic Matter Response in Headwater Mountain Streams.Front. Water 3:682608. doi: 10.3389/frwa.2021.682608
DOI: 10.3535/3w2-wk4-1gt
title: Paleofavosites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kbv-8kr-c51
title: Catenipora

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20738449.v1
title: Hierarchical Clustering Analysis Data

description: Data from Hierarquical Clustering Analysis
DOI: 10.3535/tpg-krw-n91
title: Catenipora

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z9d-8sr-9kj
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/5b38d3v62c
title: Outcome and clinico-phenotypical features of acute Lymphoblastic leukemia/lymphoma with cutaneous involvement: a multicentric case-series

description: Figure 2. Various clinical aspects of skin involvement in ALL/LBL. A. Multiple head nodules/tumors in a child with T-LBL. B. Unique nodule/tumor on the arm in an adult patient with B-LBL. C. Multiple ulcerative lesions on the back of the leg in an adult patient with T-LBL. Abbreviations : LBL, lymphoblastic lymphoma Figure 3. Histological and immunohistochemical aspects of ALL/LBL. A. Skin biopsy of a T-LBL with a tumoral infiltrate involving the full height of the sample (Low magnification, H&E staining in FFPE sample). B. The infiltrate spares the epidermis (Medium magnification, H&E staining in FFPE sample). C. The infiltrate is composed of medium to large size cells with minimal cytoplasm, fine dusty chromatin, absent to inconspicuous nucleoli and irregular nuclear contour (High magnification, H&E staining in FFPE sample). D. Diffuse nuclear positive Ki67 immunostaining with high intensity in a T-LBL (Low magnification). E. Diffuse nuclear positive TdT immunostaining with medium intensity in a T-LBL (Low magnification). Abbreviations : LBL, lymphoblastic lymphoma; H&E, hematoxylin & eosin; FFPE, formalin-fixed paraffin-embbeded; TdT, terminal deoxynucleotidyl transferase. Table 2: Comparison of cutaneous immunohistochemical expression with bone marrow flow cytometric phenotype. Bold and underlined: antigens with discordant expression by leukemic cells in skin versus bone marrow NA: not available Table 3: Molecular features of the cohort.
DOI: 10.3535/7kz-en5-xgn
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fyk-qwj-e25
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/30a-dvb-z7q
title: Leptoplastus stenotus Angelin, 1854

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4880312.v4
title: CAGE peaks (mm10 v3)

description: <pre>CAGE peaks === This directory contains the CAGE peaks defined in the FANTOM5 project as a robust set, where genomic coordinates originally defined on mm9 are lifted to mm10 by liftOver tool. By following the update, their annotations are also updated - see “CAGE_peaks_annotation” directory in the parent directory. - Inquiries: fantom-help@gsc.riken.jp - Update: 2015-09-18 initial release 2016-07-22 ver.2 release 2017-04-14 ver.3 release Data files --- - mm10_liftover_CAGE_peaks_phase1and2.bed.gz : all lifted-over CAGE peaks using UCSC Lift-over - mm10_fair_CAGE_peaks_phase1and2.bed : fairly remapped CAGE peaks. - mm10_problematic_CAGE_peaks_phase1and2.bed : problematic CAGE peaks that were filtered out by QC - mm10_new_CAGE_peaks_phase1and2.bed : newly identified CAGE peaks in mm10 DPI clustering - mm9_droppped_CAGE_peaks_phase1and2.bed : unmapped CAGE peaks (in mm9 coordination) Description of the columns in CAGE peaks coordinates files --- This is baed on BED9 format, where the thickStart and thickEnd position represent representative TSS positions. (https://genome.ucsc.edu/FAQ/FAQformat.html#format1) - chromosome - start of CAGE peak region - end of CAGE peak region - name (ID) of the CAGE peak - score - strand of the CAGE peak - start of the representative TSS position - end of the representative TSS position (Note: end is always start+1) - rgb string for color coding (plus or minus strand only) </pre>
DOI: 10.3535/d5j-v4m-51h
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tp8-4h2-ef1
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1066120.v1
title: MODELIMG CROP PATTEN SYSTEM USING LINEAR PROGRAMMING

description: In agricultural situations, farmers usually faced with the problem of how to allocate their<br>limited production resources among cropping and livestock activities. Farmer's planners can offer<br>effective techniques, such as linear programming (lp) to address the problem and produce optimal<br>solution. In this paper we have demonstrated that how a farmer who has limited resources such as farmers<br>availability ,storage capacity and availability of land can be formulated as a linear programming having<br>linear objective function with three constraints
DOI: 10.17632/ypsdtzkhdj
title: Acid catalysed synthesis of dimethyl isosorbide via dimethyl carbonate chemistry 

description: Data includes:  Purolite and amberlyst catalysts properties; Optimization of the reaction conditions with CT275DR; Optimization of the reaction conditions with amberlyst-36; Blank experiment and dmi reaction with CT275DR; Catalyst recycling; Methylation of isosorbide over time with CT275DR; 1H and 13C NMR spectra	of the products
DOI: 10.3535/22x-zc1-r2e
title: Echinoidea Schumacher, 1817

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22335226.v2
title: Data Set

description: The data reflect results of conference survey
DOI: 10.17632/9bkrymr2dg
title: Data for: Simultaneous quantification of allantoin and steroidal saponins in yam (Dioscorea spp.) powders

description: raw data
DOI: 10.3535/7y9-xwn-x2f
title: †Asaphidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ztm-kzf-7ta
title: Catenipora

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/24s-mxd-n91
title: Receptaculites Deshayes in Bory de St.-Vincent, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/aep-hft-6n2
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20014757.v1
title: Aging and wave-component latency delays in oVEMP and cVEMP: a systematic review with meta-analysis

description: Abstract Introduction: The natural aging process may result in morphological changes in the vestibular system and in the afferent neural pathway, including loss of hair cells, decreased numbers of vestibular nerve cells, and loss of neurons in the vestibular nucleus. Thus, with advancing age, there should be a decrease in amplitudes and an increase in latencies of the vestibular evoked myogenic potentials, especially the prolongation of p13 latency. Moreover, many investigations have found no significant differences in latencies with advancing age. Objective: To determine if there are significant differences in the latencies of cervical and ocular evoked myogenic potentials between elderly and adult patients. Methods: This is a systematic review with meta-analysis of observational studies, comparing the differences of these parameters between elderly and young adults, without language or date restrictions, in the following databases: Pubmed, ScienceDirect, SCOPUS, Web of Science, SciELO and LILACS, in addition to the gray literature databases: OpenGrey.eu and DissOnline, as well as Research Gate. Results: The n1 oVEMP latencies had a mean delay in the elderly of 2.32 ms with 95% CI of 0.55-4.10 ms. The overall effect test showed p = 0.01, disclosing that such difference was significant. The heterogeneity found was I 2 = 96% (p &lt; 0.001). Evaluation of p1 latency was not possible due to the low number of articles selected for this condition. cVEMP analysis was performed in 13 articles. For the p13 component, the mean latency delay in the elderly was 1.34 ms with 95% CI of 0.56-2.11 ms. The overall effect test showed a p &lt; 0.001, with heterogeneity value I 2 = 92% (p &lt; 0.001). For the n23 component, the mean latency delay for the elderly was 2.82 ms with 95% CI of 0.33-5.30 ms. The overall effect test showed p = 0.03. The heterogeneity found was I 2 = 99% (p &lt; 0.001). Conclusion: The latency of oVEMP n1 wave component and latencies of cVEMP p13 and n23 wave components are longer in the elderly aged &gt;60 years than in young adults.
DOI: 10.6084/m9.figshare.21183799.v1
title: README

description: README corresponding to code to generate figures of manuscript '<strong>DNA methylation QTL mapping across diverse human tissues provides molecular links between genetic variation and complex traits'</strong>
DOI: 10.3535/7vv-9xv-4qg
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qpa-7bw-jm2
title: Didymograptus extensus Elles et Wood, 1901

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1291629.v1
title: The Effects of Cathode Parameters on the Performance of Poly(2,5-Benzimidazole)-Based Polymer ElectrolyteMembrane Fuel Cell

description: The effects of electrode parameters on membrane<br>electrode assembly performance including Pt loading, hydrophobicity<br>during heat treatment, catalyst layer thickness and<br>the amount of polytetrafluoroethylene (PTFE) in the cathode<br>are investigated. The fuel cell performance is maximized via<br>catalyst utilization by optimizing the phosphoric acid content<br>in the electrodes. Heat treatment of gas diffusion electrode<br>results in an increase in hydrophobicity and a decrease in<br>phosphoric acid content in the catalyst layer, which drastically<br>affects the fuel cell performance. In our conditions, a maximum<br>fuel cell performance of 270 mW cm−2 was achieved at<br>160 °C with air using 1 mg Pt cm−2 total catalyst loading<br>(20 % PTFE). The fuel cell performance and the poisoning<br>effect of carbon monoxide in poly(2,5-benzimidazole)<br>(ABPBI)-membrane-based high-temperature membrane electrode<br>assemblies were investigated with respect to carbon<br>monoxide concentrations. Fuel cell performance of Pt alloys<br>(Pt-Cu/C, Pt-Fe/C, Pt-Ni/C) is compared with that of Pt/C at<br>temperatures between 140 and 180 °C. It was observed that<br>Pt-Cu/C alloy catalysts exhibit higher performance with lower<br>catalyst loadings (0.4 mg Pt cm−2) than Pt/C catalyst. The<br>performance of alloy catalysts follows the order of Pt-Cu/C&gt;<br>Pt-Fe/C&gt;Pt-Ni/C&gt;Pt/C.
DOI: 10.17632/kdg2x56r77
title: Effects of Geopolitical Events on The Volatility of Crude Oil Market: WTI

description: Data used for submitted article with title: Effects of Geopolitical Events on The Volatility of Crude Oil Market: WTI
DOI: 10.3535/fq3-qk3-rbw
title: Didymograptus extensus Elles et Wood, 1901

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tv6-k73-8pl
title: Pycnosteus pauli

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21624393.v1
title: Effectiveness of an Active Methodology for Learning ECG during the Internal Medicine Internship

description: Abstract Background Studies have shown a low accuracy of urgent care physicians in interpreting electrocardiogram (ECG) in severe cardiovascular conditions. Objective To evaluate the effectiveness of an ECG learning method in internal medicine internships and to know the perception of interns regarding learning before and after the methodology. Methods This study used a database with the results of an ECG pre- and post-test of the classes in the internal medicine internship from 2017 to 2022. A qualitative questionnaire was sent with questions for self-assessment of perception of learning. Results The study included a total of 227 students, 161 of whom (70.9%) were female. The mean age was 26.4 ± 4.2 years old. The pre-test mean was 3.75 ± 2.0 points, and the post-test mean was 8.48 ± 1.5 points, showing a statistically significant difference, even after stratification by sex, age, and course period (p &lt; 0.001 for all comparisons). Sixty-nine (30%) of the students responded to the qualitative questionnaire. The three predominant feelings prior to learning were despair, fear, and insecurity. After the Club, the predominant feelings were security, tranquility, and confidence. Conclusion The level of prior knowledge regarding ECG was low among students in the medical internship, and the proposed methodology was effective for learning ECG, regardless of age, sex, or course period. It was possible to transform negative beliefs regarding ECG learning and make learning meaningful and enjoyable. A more incisive look at medical courses for learning the ECG in a more practical and contextualized way can improve this scenario.