cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3999356
title: Synthesis of Vinylene-Linked Two-Dimensional Conjugated Pol-ymers via the Horner-Wadsworth-Emmons Reaction

description: DFTB+ // mio-0-1 optimised structures of 2D-PPQV1 and 2D-PPQV2. "Layer mismatch" structures were optimized with fixed unit cells.
DOI: 10.5281/zenodo.3999355
title: Synthesis of Vinylene-Linked Two-Dimensional Conjugated Pol-ymers via the Horner-Wadsworth-Emmons Reaction

description: DFTB+ // mio-0-1 optimised structures of 2D-PPQV1 and 2D-PPQV2. "Layer mismatch" structures were optimized with fixed unit cells.
DOI: 10.6084/m9.figshare.12628139
title: Dataset_MT_DiogoC

description: Dataset including cross-linguistic awareness and c-test scores
DOI: 10.6084/m9.figshare.12628139.v1
title: Dataset_MT_DiogoC

description: Dataset including cross-linguistic awareness and c-test scores
DOI: 10.6084/m9.figshare.12628082
title: Visions of time in geospatial ontologies from Indigenous peoples: A case study with the Eastern Cree in Northern Quebec

description: This dataset supports a study discussed in the manuscript entitled "Visions of time in geospatial ontologies from Indigenous peoples: A case study with the Eastern Cree in Northern Quebec". The document includes Nvivo codes, examples of references, and examples of stories extracted from interviews.
DOI: 10.6084/m9.figshare.12628031
title: Cost analysis of implementing HIV drug resistance testing in Kenya: a case study of a service delivery site at a tertiary level hospital in Kenya

description: Data collection tools
DOI: 10.6084/m9.figshare.12628031.v1
title: Cost analysis of implementing HIV drug resistance testing in Kenya: a case study of a service delivery site at a tertiary level hospital in Kenya

description: Data collection tools
DOI: 10.6084/m9.figshare.12627911
title: Shrub Density Setup

description: Data used to estimate the average shrub density in the Carrizo Plain National park, by using online satellite resources. GPS locations of sites were taken and estimations of number of shrubs in a 10m radius area were taken.
DOI: 10.6084/m9.figshare.12627929
title: Population genetic structure in Striga hermonthica

description: The variable susceptibility of differing <i>Striga hermonthica</i> populations from sub-Saharan Africa to the mycoherbicide <i>Fusarium oxysporum</i> f. sp. <i>strigae </i>(Fos) isolates ‘Foxy-2’ and ‘FK3’, is a crucial constraint that discourages the general acceptance and use of the mycoherbicide. No previous research-based scientific basis explains the worrying phenomenon. Our work shows that genomic variation in <i>S. hermonthica</i> populations, rather than <i>S. hermonthica</i> sampling zones, better explain the variable susceptibility of S. hermonthica to ‘Foxy-2’ and ‘FK3’.
DOI: 10.6084/m9.figshare.12627911.v2
title: Shrub Density Setup

description: Data used to estimate the average shrub density in the Carrizo Plain National park, by using online satellite resources. GPS locations of sites were taken and estimations of number of shrubs in a 10m radius area were taken.
DOI: 10.6084/m9.figshare.12627929.v1
title: Population genetic structure in Striga hermonthica

description: The variable susceptibility of differing <i>Striga hermonthica</i> populations from sub-Saharan Africa to the mycoherbicide <i>Fusarium oxysporum</i> f. sp. <i>strigae </i>(Fos) isolates ‘Foxy-2’ and ‘FK3’, is a crucial constraint that discourages the general acceptance and use of the mycoherbicide. No previous research-based scientific basis explains the worrying phenomenon. Our work shows that genomic variation in <i>S. hermonthica</i> populations, rather than <i>S. hermonthica</i> sampling zones, better explain the variable susceptibility of S. hermonthica to ‘Foxy-2’ and ‘FK3’.
DOI: 10.6084/m9.figshare.12627911.v1
title: Shrub Density Setup

description: Data used to estimate the average shrub density in the Carrizo Plain National park, by using online satellite resources. GPS locations of sites were taken and estimations of number of shrubs in a 10m radius area were taken.
DOI: 10.6084/m9.figshare.12627806
title: Data and code from "Facilitative priority effects drive parasite assembly under coinfection"

description: Data and code supporting the results from the manuscript, titled "Facilitative priority effects drive parasite assembly under coinfection"<br><b></b>
DOI: 10.6084/m9.figshare.12627806.v1
title: Data and code from "Facilitative priority effects drive parasite assembly under coinfection"

description: Data and code supporting the results from the manuscript, titled "Facilitative priority effects drive parasite assembly under coinfection"<br><b></b>
DOI: 10.6084/m9.figshare.12627632
title: ParaPat: The Multi-Million Sentences Parallel Corpus of Patents Abstracts

description: This repository contains the developed parallel corpus from the open access Google Patents dataset in 74 language pairs, comprising more than 68 million sentences and 800 million tokens. Sentences were automatically aligned using the Hunalign algorithm for the largest 22 language pairs, while the others were abstract (i.e. paragraph) aligned. We demonstrate the capabilities of our corpus by training Neural Machine Translation (NMT) models for the main 9 language pairs, with a total of 18 models. Our parallel corpus is freely available in TSV format.<br>The original article can be found here: https://www.aclweb.org/anthology/2020.lrec-1.465/<br>Please cite as:<br><pre>@inproceedings{soares-etal-2020-parapat, title = "{P}ara{P}at: The Multi-Million Sentences Parallel Corpus of Patents Abstracts", author = "Soares, Felipe and Stevenson, Mark and Bartolome, Diego and Zaretskaya, Anna", booktitle = "Proceedings of The 12th Language Resources and Evaluation Conference", month = may, year = "2020", address = "Marseille, France", publisher = "European Language Resources Association", url = "https://www.aclweb.org/anthology/2020.lrec-1.465", pages = "3769--3774", abstract = "The Google Patents is one of the main important sources of patents information. A striking characteristic is that many of its abstracts are presented in more than one language, thus making it a potential source of parallel corpora. This article presents the development of a parallel corpus from the open access Google Patents dataset in 74 language pairs, comprising more than 68 million sentences and 800 million tokens. Sentences were automatically aligned using the Hunalign algorithm for the largest 22 language pairs, while the others were abstract (i.e. paragraph) aligned. We demonstrate the capabilities of our corpus by training Neural Machine Translation (NMT) models for the main 9 language pairs, with a total of 18 models. Our parallel corpus is freely available in TSV format and with a SQLite database, with complementary information regarding patent metadata.", language = "English", ISBN = "979-10-95546-34-4", }</pre>
DOI: 10.6084/m9.figshare.12627488
title: Supplementary Material (AlpineUngulates2013.xlsx) from Stable body size of Alpine ungulates

description: All data
DOI: 10.6084/m9.figshare.12627488.v1
title: Supplementary Material (AlpineUngulates2013.xlsx) from Stable body size of Alpine ungulates

description: All data
DOI: 10.6084/m9.figshare.12627632.v1
title: ParaPat: The Multi-Million Sentences Parallel Corpus of Patents Abstracts

description: This repository contains the developed parallel corpus from the open access Google Patents dataset in 74 language pairs, comprising more than 68 million sentences and 800 million tokens. Sentences were automatically aligned using the Hunalign algorithm for the largest 22 language pairs, while the others were abstract (i.e. paragraph) aligned. We demonstrate the capabilities of our corpus by training Neural Machine Translation (NMT) models for the main 9 language pairs, with a total of 18 models. Our parallel corpus is freely available in TSV format.<br>The original article can be found here: https://www.aclweb.org/anthology/2020.lrec-1.465/<br>Please cite as:<br><pre>@inproceedings{soares-etal-2020-parapat, title = "{P}ara{P}at: The Multi-Million Sentences Parallel Corpus of Patents Abstracts", author = "Soares, Felipe and Stevenson, Mark and Bartolome, Diego and Zaretskaya, Anna", booktitle = "Proceedings of The 12th Language Resources and Evaluation Conference", month = may, year = "2020", address = "Marseille, France", publisher = "European Language Resources Association", url = "https://www.aclweb.org/anthology/2020.lrec-1.465", pages = "3769--3774", abstract = "The Google Patents is one of the main important sources of patents information. A striking characteristic is that many of its abstracts are presented in more than one language, thus making it a potential source of parallel corpora. This article presents the development of a parallel corpus from the open access Google Patents dataset in 74 language pairs, comprising more than 68 million sentences and 800 million tokens. Sentences were automatically aligned using the Hunalign algorithm for the largest 22 language pairs, while the others were abstract (i.e. paragraph) aligned. We demonstrate the capabilities of our corpus by training Neural Machine Translation (NMT) models for the main 9 language pairs, with a total of 18 models. Our parallel corpus is freely available in TSV format and with a SQLite database, with complementary information regarding patent metadata.", language = "English", ISBN = "979-10-95546-34-4", }</pre>
DOI: 10.6084/m9.figshare.12627632.v2
title: ParaPat: The Multi-Million Sentences Parallel Corpus of Patents Abstracts

description: This repository contains the developed parallel corpus from the open access Google Patents dataset in 74 language pairs, comprising more than 68 million sentences and 800 million tokens. Sentences were automatically aligned using the Hunalign algorithm for the largest 22 language pairs, while the others were abstract (i.e. paragraph) aligned. We demonstrate the capabilities of our corpus by training Neural Machine Translation (NMT) models for the main 9 language pairs, with a total of 18 models. Our parallel corpus is freely available in TSV format.<br>The original article can be found here: https://www.aclweb.org/anthology/2020.lrec-1.465/<br>Please cite as:<br><pre>@inproceedings{soares-etal-2020-parapat, title = "{P}ara{P}at: The Multi-Million Sentences Parallel Corpus of Patents Abstracts", author = "Soares, Felipe and Stevenson, Mark and Bartolome, Diego and Zaretskaya, Anna", booktitle = "Proceedings of The 12th Language Resources and Evaluation Conference", month = may, year = "2020", address = "Marseille, France", publisher = "European Language Resources Association", url = "https://www.aclweb.org/anthology/2020.lrec-1.465", pages = "3769--3774", abstract = "The Google Patents is one of the main important sources of patents information. A striking characteristic is that many of its abstracts are presented in more than one language, thus making it a potential source of parallel corpora. This article presents the development of a parallel corpus from the open access Google Patents dataset in 74 language pairs, comprising more than 68 million sentences and 800 million tokens. Sentences were automatically aligned using the Hunalign algorithm for the largest 22 language pairs, while the others were abstract (i.e. paragraph) aligned. We demonstrate the capabilities of our corpus by training Neural Machine Translation (NMT) models for the main 9 language pairs, with a total of 18 models. Our parallel corpus is freely available in TSV format and with a SQLite database, with complementary information regarding patent metadata.", language = "English", ISBN = "979-10-95546-34-4", }</pre>
DOI: 10.6084/m9.figshare.12627419
title: Linear resistivity and Sachdev-Ye-Kitaev (SYK) spin liquid behavior in a quantum critical metal with spin-1/2 fermions

description: See README for description of contents.<br>
DOI: 10.6084/m9.figshare.12627422.v1
title: Figure source data for "A spike-timing-dependent plasticity rule for single, clustered and distributed dendritic spines"

description: Figure source data for "A spike-timing-dependent plasticity rule for single, clustered and distributed dendritic spines"
DOI: 10.6084/m9.figshare.12627419.v1
title: PNAS Data archive

description: See README for description of contents.<br>
DOI: 10.6084/m9.figshare.12627408
title: caption_for_videos.txt from The bee <i>Tetragonula</i> builds its comb like a crystal

description: Stingless bees of the genus <i>Tetragonula</i> construct a brood comb with a spiral or a target pattern architecture in three dimensions. Crystals possess these same patterns on the molecular scale. Here, we show that the same excitable-medium dynamics governs both crystal nucleation and growth and comb construction in <i>Tetragonula</i>, so that a minimal coupled-map lattice model based on crystal growth explains how these bees produce the structures seen in their bee combs.
DOI: 10.6084/m9.figshare.12627408.v1
title: caption_for_videos.txt from The bee <i>Tetragonula</i> builds its comb like a crystal

description: Stingless bees of the genus <i>Tetragonula</i> construct a brood comb with a spiral or a target pattern architecture in three dimensions. Crystals possess these same patterns on the molecular scale. Here, we show that the same excitable-medium dynamics governs both crystal nucleation and growth and comb construction in <i>Tetragonula</i>, so that a minimal coupled-map lattice model based on crystal growth explains how these bees produce the structures seen in their bee combs.
DOI: 10.6084/m9.figshare.12627383
title: S-Fig.1.; S-Table 1.; S-Fig.2.; S-Table 2. from A study on the aromaticity and magnetic properties of N-confused porphyrins

description: Various cyclic subunits of NCP isomers; TRE/|β| and %TRE values of the various cyclic subunits of NCP isomers.; The RCs of NCP isomers, all in units of that for benzene(I0).; CC values of normal porphyrins and NCP isomers (all in units of that for benzene).
DOI: 10.6084/m9.figshare.12627383.v1
title: S-Fig.1.; S-Table 1.; S-Fig.2.; S-Table 2. from A study on the aromaticity and magnetic properties of N-confused porphyrins

description: Various cyclic subunits of NCP isomers; TRE/|β| and %TRE values of the various cyclic subunits of NCP isomers.; The RCs of NCP isomers, all in units of that for benzene(I0).; CC values of normal porphyrins and NCP isomers (all in units of that for benzene).
DOI: 10.6084/m9.figshare.12627372
title: Supplementary materials - Sinking time in years.xlsx from Reconstructing the ecology of a Jurassic pseudoplanktonic raft colony

description: Pseudoplanktonic crinoid raft colonies are an enigma of the Jurassic. These raft colonies are thought to have developed as floating filter-feeding communities due to an exceptionally rich oceanic niche, high in the water column enabling them to reach large densities on these log rafts. However, this pseudoplanktonic hypothesis has not been quantitatively tested, and there remains some doubt that this mode of life was possible. The ecological structure of the crinoid colony is resolved using spatial point process analyses and the duration estimates of the floating system until sinking using moisture diffusion models. Using spatial analysis, we found that the crinoids would have trailed preferentially positioned at the back of the floating log in the regions of least resistance, consistent with a floating, not benthic ecology. Additionally, we found using a series of moisture diffusion models at different log densities and sizes that ecosystem collapse did not take place solely due to colonies becoming overladen as previously assumed. Our analyses have found that these crinoid colonies studied could have existed for greater than 10 years, even up to 20 years exceeding the life expectancy of modern documented raft systems with possible implications for the role of modern raft communities in the biotic colonization of oceanic islands and intercontinental dispersal of marine and terrestrial species.
DOI: 10.6084/m9.figshare.12627372.v1
title: Supplementary materials - Sinking time in years.xlsx from Reconstructing the ecology of a Jurassic pseudoplanktonic raft colony

description: Pseudoplanktonic crinoid raft colonies are an enigma of the Jurassic. These raft colonies are thought to have developed as floating filter-feeding communities due to an exceptionally rich oceanic niche, high in the water column enabling them to reach large densities on these log rafts. However, this pseudoplanktonic hypothesis has not been quantitatively tested, and there remains some doubt that this mode of life was possible. The ecological structure of the crinoid colony is resolved using spatial point process analyses and the duration estimates of the floating system until sinking using moisture diffusion models. Using spatial analysis, we found that the crinoids would have trailed preferentially positioned at the back of the floating log in the regions of least resistance, consistent with a floating, not benthic ecology. Additionally, we found using a series of moisture diffusion models at different log densities and sizes that ecosystem collapse did not take place solely due to colonies becoming overladen as previously assumed. Our analyses have found that these crinoid colonies studied could have existed for greater than 10 years, even up to 20 years exceeding the life expectancy of modern documented raft systems with possible implications for the role of modern raft communities in the biotic colonization of oceanic islands and intercontinental dispersal of marine and terrestrial species.
DOI: 10.6084/m9.figshare.12627350
title: Supplementary Tables 1–3 from Neural architecture and regeneration in the acoel <i>Hofstenia miamia</i>

description: This file contains tables with sequences and orthology assignment information for genes used in the study, the peptide sequence used for antibody synthesis, as well as raw data for Figure 6.
DOI: 10.6084/m9.figshare.12627341
title: Dataset S1 from Insect mitochondria as targets of freezing-induced injury

description: Fat body mitochondria, results of ImageJ analysis
DOI: 10.6084/m9.figshare.12627335
title: Dataset S2 from Insect mitochondria as targets of freezing-induced injury

description: Hindgut mitochodria, results of ImageJ analysis
DOI: 10.6084/m9.figshare.12627341.v1
title: Dataset S1 from Insect mitochondria as targets of freezing-induced injury

description: Fat body mitochondria, results of ImageJ analysis
DOI: 10.6084/m9.figshare.12627350.v2
title: Supplementary Tables 1–3 from Neural architecture and regeneration in the acoel <i>Hofstenia miamia</i>

description: This file contains tables with sequences and orthology assignment information for genes used in the study, the peptide sequence used for antibody synthesis, as well as raw data for Figure 6.
DOI: 10.6084/m9.figshare.12627335.v1
title: Dataset S2 from Insect mitochondria as targets of freezing-induced injury

description: Hindgut mitochodria, results of ImageJ analysis
DOI: 10.6084/m9.figshare.12627350.v1
title: Supplementary Tables 1-3 from Neural architecture and regeneration in the acoel <i>Hofstenia miamia</i>

description: This file contains tables with sequences and orthology assignment information for genes used in the study, the peptide sequence used for antibody synthesis, as well as raw data for Figure 6.
DOI: 10.6084/m9.figshare.12627311
title: Table 1 from Body shape diversification along the benthic–pelagic axis in marine fishes

description: Colonization of novel habitats can result in marked phenotypic responses to the new environment that include changes in body shape and opportunities for further morphological diversification. Fishes have repeatedly transitioned along the benthic–pelagic axis, with varying degrees of association with the substrate. Previous work focusing on individual lineages shows that these transitions are accompanied by highly predictable changes in body form. Here, we generalize expectations drawn from this literature to study the effects of habitat on body shape diversification across 3344 marine teleost fishes. We compare rates and patterns of evolution in eight linear measurements of body shape among fishes that live in pelagic, demersal and benthic habitats. While average body shape differs between habitats, these differences are subtle compared to the high diversity of shapes found within each habitat. Benthic living increases the rate of body shape evolution and has led to numerous lineages evolving extreme body shapes, including both exceptionally wide bodies and highly elongate, eel-like forms. By contrast, we find that benthic living is associated with the slowest diversification of structures associated with feeding. Though we find that habitat can serve as an impetus for predictable trait changes, we also highlight the diversity of responses in marine teleosts to opportunities presented by major habitats.
DOI: 10.6084/m9.figshare.12627140
title: MODFLOW-OWHM_v2_Across_the_US

description: Modeling the Surface Water and Groundwater Budgets of the US using MODFLOW-OWHM
DOI: 10.6084/m9.figshare.12626453
title: ROR Data Dump 5.0 (July 2020)

description: ROR data download. Based on GRID release 10.6084/m9.figshare.12587828
DOI: 10.6084/m9.figshare.12627311.v1
title: Table 1 from Body shape diversification along the benthic–pelagic axis in marine fishes

description: Colonization of novel habitats can result in marked phenotypic responses to the new environment that include changes in body shape and opportunities for further morphological diversification. Fishes have repeatedly transitioned along the benthic–pelagic axis, with varying degrees of association with the substrate. Previous work focusing on individual lineages shows that these transitions are accompanied by highly predictable changes in body form. Here, we generalize expectations drawn from this literature to study the effects of habitat on body shape diversification across 3344 marine teleost fishes. We compare rates and patterns of evolution in eight linear measurements of body shape among fishes that live in pelagic, demersal and benthic habitats. While average body shape differs between habitats, these differences are subtle compared to the high diversity of shapes found within each habitat. Benthic living increases the rate of body shape evolution and has led to numerous lineages evolving extreme body shapes, including both exceptionally wide bodies and highly elongate, eel-like forms. By contrast, we find that benthic living is associated with the slowest diversification of structures associated with feeding. Though we find that habitat can serve as an impetus for predictable trait changes, we also highlight the diversity of responses in marine teleosts to opportunities presented by major habitats.
DOI: 10.6084/m9.figshare.12626025
title: Genome wide association analyses for <i>Jenynsia lineata</i> (a) and <i>Anableps dowei</i> (b,c,d,e). from The direction of genital asymmetry is expressed stochastically in internally fertilizing anablepid fishes

description: These tables contain the results of the association mapping conducted using PLINK for <i>Jenynsia lineata</i> (a), all specimens of <i>Anableps dowei</i> combining compatible breeding morphs for males and females (b), all specimens of <i>A. dowei</i> combining incompatible breeding morphs for males and females (c), only males of <i>A. dowei</i> (d), and only females of <i>A. dowei</i> (e).
DOI: 10.6084/m9.figshare.12626453.v1
title: ROR Data Dump 5.0 (July 2020)

description: ROR data download. Based on GRID release 10.6084/m9.figshare.12587828