cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc8dnny
title: CCDC 250500: Experimental Crystal Structure Determination

description: Related Article: P.Vojtisek, P.Cigler, J.Kotek, J.Rudovsky, P.Hermann, I.Lukes|2005|Inorg.Chem.|44|5591|doi:10.1021/ic048190s
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8zs66
title: CCDC 267908: Experimental Crystal Structure Determination

description: Related Article: V.Jancik, H.W.Roesky|2005|Inorg.Chem.|44|5556|doi:10.1021/ic050693q
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8zs77
title: CCDC 267909: Experimental Crystal Structure Determination

description: Related Article: V.Jancik, H.W.Roesky|2005|Inorg.Chem.|44|5556|doi:10.1021/ic050693q
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8zs88
title: CCDC 267910: Experimental Crystal Structure Determination

description: Related Article: V.Jancik, H.W.Roesky|2005|Inorg.Chem.|44|5556|doi:10.1021/ic050693q
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.jy5s45
title: Occurrence Download

description: A dataset containing 0 records in GBIF matching the query:
SELECT
 scientificname
FROM
 occurrence
WHERE
 occurrence."year" = 2022
 AND occurrence.countrycode = 'CO'
 AND occurrence.v_datasetname LIKE 'Universidad%'
 AND occurrence.establishmentmeans IS NOT NULL

 The dataset's 0 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023422-251009101135966/datasets/export for details.
DOI: 10.5517/cc9fgnt
title: CCDC 281066: Experimental Crystal Structure Determination

description: Related Article: Yu-Bin Dong, Hai-Ying Wang, Jian-Ping Ma, Da-Zhong Shen, Ru-Qi Huang|2005|Inorg.Chem.|44|4679|doi:10.1021/ic050218s
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.uh7ne4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caudofoveata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-70 70,-60 70,-60 80,-70 80,-70 70))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023438-251009101135966/datasets/export for details.
DOI: 10.15468/dl.bepfak
title: Occurrence Download

description: A dataset containing 818 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Deltentosteus quadrimaculatus"
 ]
}

 The dataset includes 818 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012846-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qj68ua
title: Occurrence Download

description: A dataset containing 131117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Parabuteo unicinctus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 131117 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012816-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwhdwf
title: Occurrence Download

description: A dataset containing 1498 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa bracteata",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1498 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012849-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gv83a3
title: Occurrence Download

description: A dataset containing 404 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum melongena",
 "Country is Philippines",
 "HasCoordinate is true"
 ]
}

 The dataset includes 404 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012847-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nh225m
title: Occurrence Download

description: A dataset containing 56388 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melanerpes chrysogenys)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 56388 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012824-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gdzz3k
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum melongena",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 52 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012848-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16741557
title: Shark Cove Radiometric Thermal Data - June 1 2021

description: This orthomosaic of Shark Cove was created from 694 images taken on June 1 2021, at 375 ft AGL, with a DJI XT2 Sensor mounted to a DJI Matrice 210 UAV. The mission was planned using the DJI Pilot application and post-processed using DroneDeploy.
description: Disclaimer: The following aerial imagery is intended solely for research purposes related to the assessment of the captured area. It is strictly prohibited to distribute this imagery to any unauthorized individuals or third-party entities without prior authorization.The University of Guam Drone Corps funded by NASA Guam Space Grant and NASA Guam EPSCoR retain all rights to the aerial imagery, including but not limited to copyrights and intellectual property rights. Any unauthorized modification, reproduction, or distribution of the imagery is strictly prohibited.By using this data, you acknowledge and agree to abide by the terms and conditions set forth in this disclaimer. Privacy Disclaimer: The aerial imagery captured for assessment may inadvertently include images of private property and individuals. While every effort has been made to respect privacy, it is possible that identifiable information or sensitive locations may be visible in the imagery. University of Guam Drone Corps and related parties disclaim any responsibility for the unintentional collection or dissemination of such information. The recipient(s) of this imagery are urged to handle it with due care and take necessary precautions to protect the privacy rights of individuals and comply with applicable privacy laws and regulations.
DOI: 10.5281/zenodo.16741558
title: Shark Cove Radiometric Thermal Data - June 1 2021

description: This orthomosaic of Shark Cove was created from 694 images taken on June 1 2021, at 375 ft AGL, with a DJI XT2 Sensor mounted to a DJI Matrice 210 UAV. The mission was planned using the DJI Pilot application and post-processed using DroneDeploy.
description: Disclaimer: The following aerial imagery is intended solely for research purposes related to the assessment of the captured area. It is strictly prohibited to distribute this imagery to any unauthorized individuals or third-party entities without prior authorization.The University of Guam Drone Corps funded by NASA Guam Space Grant and NASA Guam EPSCoR retain all rights to the aerial imagery, including but not limited to copyrights and intellectual property rights. Any unauthorized modification, reproduction, or distribution of the imagery is strictly prohibited.By using this data, you acknowledge and agree to abide by the terms and conditions set forth in this disclaimer. Privacy Disclaimer: The aerial imagery captured for assessment may inadvertently include images of private property and individuals. While every effort has been made to respect privacy, it is possible that identifiable information or sensitive locations may be visible in the imagery. University of Guam Drone Corps and related parties disclaim any responsibility for the unintentional collection or dissemination of such information. The recipient(s) of this imagery are urged to handle it with due care and take necessary precautions to protect the privacy rights of individuals and comply with applicable privacy laws and regulations.
DOI: 10.15468/dl.6zegz2
title: Occurrence Download

description: A dataset containing 861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Parabuteo unicinctus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 861 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012851-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15334135
title: Development of a Genetic Priority Score to Predict Drug Side Effects Using Human Genetic Evidence

description: This Zenodo repository contains the data associated with the publication:

Duffy, Á et al. Development of a Genetic Priority Score to Predict Drug Side Effects Using Human Genetic Evidence. Submitted

You can explore these scores further at https://rstudio-connect.hpc.mssm.edu/sideeffect-geneticpriorityscore/.

Repository contents

This archive contains all data necessary to reproduce the analyses described in the manuscript. The corresponding analysis scripts can be cloned from https://github.com/rondolab/SE-GPS.

Files within Data.zip include:



Processed drug–genetic datasets at the drug-gene-parentterm level:



Opentargets_dataset_se.mi_withgeneticsfiltered_5_All_parentterm_drugse_final.txt.gz

Onsides_dataset_se.mi_withgeneticsfiltered_5_All_parentterm_drugse_final.txt.gz


Severe drug side effect subset:



Withdrawndrugs_dataset_Opentargets_outcome_senomi_phase4.txt

Opentargets_dataset_drugwarnings_filtered_5_All_drugse_final.txt

Withdrawndrugs_dataset_Onsides_outcome_senomi_phase4.txt

Onsides_dataset_drugwarnings_filtered_5_All_drugse_final.txt


Severity scoring files:



Adr_severity_scores_phecodeX.txt


PhecodeX information:



phecodeX_info.csv


All gene dataset for 19,422 protein-coding genes and 502 phecodes



Allgenes_dataset_parentterm_predictors_collapsed_sideeffect_project.txt.gz

Allgenes_dataset_phenotype_predictors_stringentfilters_sideeffect_project.txt.gz


LOF and GOF evidence for each feature:



Predictors_with_direction_effect_sideeffect_project_gof_predvalue.txt

Predictors_with_direction_effect_sideeffect_project_lof_predvalue.txt


Processed drug–genetic datasets with directional evidence



Opentargetsgeneticdataset_filtered_5_All_DOE_matchmechanism.txt.gz

Onsidesgeneticdataset_filtered_5_All_DOE_matchmechanism.txt.gz



 

Note, we use the word parentterm to refer to the phecodeX integer.
DOI: 10.5281/zenodo.15334136
title: Development of a Genetic Priority Score to Predict Drug Side Effects Using Human Genetic Evidence

description: This Zenodo repository contains the data associated with the publication:

Duffy, Á et al. Development of a Genetic Priority Score to Predict Drug Side Effects Using Human Genetic Evidence. Submitted

You can explore these scores further at https://rstudio-connect.hpc.mssm.edu/sideeffect-geneticpriorityscore/.

Repository contents

This archive contains all data necessary to reproduce the analyses described in the manuscript. The corresponding analysis scripts can be cloned from https://github.com/rondolab/SE-GPS.

Files within Data.zip include:



Processed drug–genetic datasets at the drug-gene-parentterm level:



Opentargets_dataset_se.mi_withgeneticsfiltered_5_All_parentterm_drugse_final.txt.gz

Onsides_dataset_se.mi_withgeneticsfiltered_5_All_parentterm_drugse_final.txt.gz


Severe drug side effect subset:



Withdrawndrugs_dataset_Opentargets_outcome_senomi_phase4.txt

Opentargets_dataset_drugwarnings_filtered_5_All_drugse_final.txt

Withdrawndrugs_dataset_Onsides_outcome_senomi_phase4.txt

Onsides_dataset_drugwarnings_filtered_5_All_drugse_final.txt


Severity scoring files:



Adr_severity_scores_phecodeX.txt


PhecodeX information:



phecodeX_info.csv


All gene dataset for 19,422 protein-coding genes and 502 phecodes



Allgenes_dataset_parentterm_predictors_collapsed_sideeffect_project.txt.gz

Allgenes_dataset_phenotype_predictors_stringentfilters_sideeffect_project.txt.gz


LOF and GOF evidence for each feature:



Predictors_with_direction_effect_sideeffect_project_gof_predvalue.txt

Predictors_with_direction_effect_sideeffect_project_lof_predvalue.txt


Processed drug–genetic datasets with directional evidence



Opentargetsgeneticdataset_filtered_5_All_DOE_matchmechanism.txt.gz

Onsidesgeneticdataset_filtered_5_All_DOE_matchmechanism.txt.gz



 

Note, we use the word parentterm to refer to the phecodeX integer.
DOI: 10.15468/dl.nnmyf6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carinotetraodon borneensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012850-250802193616735/datasets/export for details.
DOI: 10.15468/dl.w72rmq
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ferula gummosa",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012854-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9nt2m
title: Occurrence Download

description: A dataset containing 77439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melanerpes cruentatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 77439 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012831-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.987ruu
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACG7782"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012853-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cj42tb
title: Occurrence Download

description: A dataset containing 6502 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation)",
 "TaxonKey is Crocuta crocuta",
 "Year 2008-2025"
 ]
}

 The dataset includes 6502 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012852-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w3g5kx
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum melongena",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012856-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xz28ke
title: Occurrence Download

description: A dataset containing 77956601 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 77956601 records from 15916 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012771-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cusfk3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syrphidae",
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "StateProvince is USA.5_1",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125161-220831081235567/datasets/export for details.
DOI: 10.15468/dl.xwje9b
title: Occurrence Download

description: A dataset containing 618373125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Year 2010-2019"
 ]
}

 The dataset includes 618373125 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125154-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7wdm6h
title: Occurrence Download

description: A dataset containing 1109313990 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year 1970-2019",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1109313990 records from 17437 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000133-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/3nc-mf5-bhz
title: Ranunculus trichophyllus Chaix

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/61y-vv4-d3c
title: Dianthus nitidus Waldst. & Kit.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/9nr-vm4-fv4
title: Cyrtandra pedicellata B. L. Burtt

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/dhs-eqw-f9c
title: Salicornia perennans Willd.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/fpj-813-k2r
title: Cyrtandra dolichocarpa A. Gray

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/jnp-c76-vj8
title: Croton L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/f21-pb8-109
title: Festuca L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/tmj-l5a-973
title: Halocnemum strobilaceum (Pall.) M. Bieb.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/dqq-nnv-y4k
title: Salicornia perennans Willd.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/qja-nvm-dhj
title: Cyrtandra richii A. Gray

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/xv1-q0d-emy
title: Cyrtandra pogonantha A. Gray

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/cmm-axt-wtc
title: Potamogeton crispus L. x Potamogeton perfoliatus L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/s7w-b1b-gc3
title: Cyrtandra incisa C. B. Clarke

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.