cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.r4847/2
title: Rallus limicola summer species distribution model, standard deviation

description: Standard deviation of Maxent species distribution model for summer Rallus limicola range. Calculated from 10 bootstrapped replicates. SDM was corrected for spatial sampling bias using the bias grid method.
DOI: 10.5061/dryad.r4847/3
title: Rallus limicola winter species distribution model

description: Median Maxent species distribution model for winter Rallus limicola range. Calculated from 10 bootstrapped replicates. SDM was corrected for spatial sampling bias using the bias grid method.
DOI: 10.5061/dryad.r4847/4
title: Rallus limicola winter species distribution model, standard deviation

description: Standard deviation of Maxent species distribution model for winter Rallus limicola range. Calculated from 10 bootstrapped replicates. SDM was corrected for spatial sampling bias using the bias grid method.
DOI: 10.5061/dryad.s1vb4/1
title: Burton_Chellew_CCC_Dryad_data

description: The individual data from the manuscript, sheet 2 contains explanatory key/legend
DOI: 10.5061/dryad.t3d75/1
title: PolyInbreeding_Code.tar

description: This compressed directory contains the 45 files needed to compile the code underlying the paper and run all simulations. Parameter values for simulations are set in the PolyIn.c file, which by default outputs three separate TXT files. The output files can be used in the PolyInbreeding_Analysis.R file to recreate all analyses and figures from the paper. This code is also publicly available, with additional documentation, on Brad Duthie's GitHub repository: https://github.com/bradduthie/PolyInbreed
DOI: 10.5061/dryad.t6d26/1
title: Dataset "Human-directed behaviour in livestock"
DOI: 10.5061/dryad.12g7j/1
title: HRM melting temperatures

description: Excel spreadsheet with high resolution melt (HRM) temperatures for 8 loci and 90 Amphicarpaea bracteata samples (14 reference, 76 unknown). This data is used to assign samples to genotypic groups based on their melting temperature and the melting temperatures of reference samples with known genotypes.
DOI: 10.5061/dryad.12g7j/2
title: leaf images

description: Amphicarpaea bracteata leaf images for phenotypic analysis
DOI: 10.5061/dryad.16n4q/1
title: final.aln
DOI: 10.5061/dryad.16n4q/2
title: chronogram
DOI: 10.5061/dryad.2q8p6/5
title: Morphological_measurements
DOI: 10.5061/dryad.2q8p6/6
title: Sampling_sites
DOI: 10.5061/dryad.2q8p6/7
title: Distributional_records

description: Records for the distribution modelling
DOI: 10.5061/dryad.2q8p6/8
title: Cheiracanthium_punctorium_assembly

description: Low coverage genome assembly
DOI: 10.5061/dryad.31r0d/1
title: ctgf-mousebrain
DOI: 10.5061/dryad.31r0d/2
title: scg10-mousebrain
DOI: 10.5061/dryad.31r0d/3
title: yfp-mousebrain
DOI: 10.5061/dryad.43q6b/1
title: Puckett_etal_BioCon2016-TotalProcessTimeData

description: Data file with the following columns: Name (species name), Init_Prop (number of days between initiation and proposed listing date), Prop_List (number of days between a proposed and final listing), Init_List (number of days between initiation and a final listing), Initiator (which group filed the species initiation), SppGroup (taxon as listed in FWS TESS database), PropSuitAfter10 (Y- yes, N- no; Y indicates the species had a lawsuit during the initiation to proposal phase), ListSuit (Y- yes, N- no; Y indicates the species had a lawsuit during the proposed to final listing phase), and SppCode (FWS TESS database code for each species).
DOI: 10.5061/dryad.43q6b/2
title: Puckett_etal_BioCon2016-Annual_List

description: Data set for the Annualized Listing Rate analysis.  Data columns include: Year and Year_C, Init (number of species initiated in that year), Lst (number of species listed in that year), AdminList (number of species listed, shifted from a yearly start date of Jan 1 to Jan 20 due to presidential administrative cycles), L_Budget (US Fish & Wildlife annual listing budget in millions of $ adjusted for inflation to the value in 2014), Candidates (the number of candidate species for that year), Admin (the presidential administration including: RR: Ronald Reagan; GHB: George H W Bush; BC: William (Bill) Clinton; GWB: George W Bush; BO: Barack Obama); Phase (the policy phase as described in the text).
DOI: 10.5061/dryad.43q6b/3
title: Puckett_etal_BioCon2016-PropSuit

description: Data file for length of time for species where lawsuits were filed within the initiation to proposal phase of listing.  Columns include: SppCode (US FWS TESS database species code), Init_PetSuit (number of days between initiation and lawsuit), PetSuit_Prop (number of days between lawsuit and proposed ruling).
DOI: 10.5061/dryad.43q6b/4
title: Puckett_etal_BioCon2016-ListSuit

description: Data file for length of time for species where lawsuits were filed within the proposal to final rule phase of listing.  Columns include: SppCode (US FWS TESS database species code), Prop_Suit (number of days between proposed rule and lawsuit), Suit_List (number of days between lawsuit and final listing rule).
DOI: 10.5061/dryad.43q6b/5
title: Puckett_etal_BioCon2016-Rcode

description: R code for the annualized listing rates, and process time analyses (initiation to proposed, proposed to listing, initiation to listing)
DOI: 10.5061/dryad.4dn80/1
title: SEPMdata

description: Data used to simulate sheepshead minnow exposure to oiled sediment in Barataria Bay, Louisiana following the Deepwater Horizon oil spill.  Files include temperature- and concentration-specific population parameters, laboratory data used to derive oiled sediment effects on growth and survival, field data used in habitat suitability model, and temperature and oiling severity data from Barataria Bay.
DOI: 10.5061/dryad.4k275/4
title: Proportion of ice and water

description: Proportion of ice and water on the largest water bodies used by migratory caribou of the Rivière-aux-Feuilles herd in northern Quebec. Ice and water coverages were estimated using 8-day averaged MODIS values from 2000 to 2014. "Sum lake" and "Sum lake-ice" respectively represent the sum of pixels with values of 37 (ie. freshwater) or 100 (ie. lake ice) on MODIS maps.
DOI: 10.5061/dryad.4k275/5
title: NAO and AO data

description: Data used to determine the relationship between the annual breakup and freeze dates of the largest water bodies used by migratory caribou from the Rivière-aux-Feuilles herd in northern Quebec, and monthly values of the North Atlantic and Arctic Oscillations.
DOI: 10.5061/dryad.4k275/6
title: Lakes ArcGIS shapefile

description: The ArcGIS shapefile representing the largest water bodies used by migratory caribou of the Rivière-aux-Feuilles herd in northern Quebec.
DOI: 10.5061/dryad.5b2k6/1
title: Microsatellite data for ocelots and bobcats

description: Individuals sampled in southern Texas and Northern Mexico. See Janecka et al. 2016 Conservation Genetics publication for information on sampling locations, methods, and other descriptions of data.Gentypes are for microsatellite loci
DOI: 10.5061/dryad.908g4/1
title: Allen_et_al_IBD

description: IBD analysis using microsatellite data and geographic distances
DOI: 10.5061/dryad.908g4/2
title: Allen_et_al_Microsat_Data

description: Microsatellite data (recoded). For original scores please contact Michael Krützen (michael.kruetzen@aim.uzh.ch)
DOI: 10.5061/dryad.908g4/3
title: Allen_et_al_infile_migrate-n_analysis

description: Input_file_migrate_analysis
DOI: 10.5061/dryad.c5271/11
title: Species occurrence

description: Species ocurrence data used in the niche analyses
DOI: 10.5061/dryad.c5271/9
title: MCCT from concatenated analyses

description: Maximum clade credibility tree (MCCT) estimated in BEAST v2.3.0  from nuclear ribosomal ITS  and three chloroplast DNA regions (trnL-F, trnH-psbA, rps16 intron) using the concatenated  method, uncorrelated lognormal relaxed clock models, and two secondary calibrations under normal prior distributions.
DOI: 10.5061/dryad.f809j/1
title: Libellulidae phylogeny

description: This is the tree that was used in our phylogenetic RMA analyses. This tree was reconstructed from Figure 4 of Carle et al. (2015) Arthropod Syst. Phylo, 73, 281-301. The tree was pruned to our dataset prior to analyses.
DOI: 10.5061/dryad.f809j/2
title: Wing pigmentation and length of Libellulidae dragonflies

description: File contains all the 89 Libellulidae dragonfly species with wing pigmentation and wing length data. Data is supplied as (1) average wing length of the anterior right wing, per sex and per species; (2) average proportion of wing pigmentation of the posterior right wing, per sex and per species. Sample sizes are informed for each sex per species.
DOI: 10.5061/dryad.h7311/1
title: DiazReal_et_al_2016_BehavEcol_Age3

description: Database of chicks of age three days
DOI: 10.5061/dryad.h7311/2
title: DiazReal_et_al_2016_BehavEcol_Age6

description: Database of chicks of age six days
DOI: 10.5061/dryad.kf245/1
title: Dataset_JAppEcol_ALA
DOI: 10.5061/dryad.mj714/1
title: SNP and msat datasets

description: Microsatellite genotypes for broad geographic sampling, and three fine scale replicates as outlined in the paper. Also the 3 SNP datasets derived from alternative parameter settings.
DOI: 10.5061/dryad.q7605/1
title: Furthest seed dispersed in each generation for each replicate

description: Distance of the furthest seed for each replicate in each generation, as well as the number of seedlings in the furthest pot. See metadata in ReadMe file (and description of Methods in the paper).
DOI: 10.5061/dryad.q7605/2
title: Traits of each genotype

description: Mean of each of four traits for each genotype (recombinant inbred line) in the experiment: height (when growing alone), dispersal (average distance of furthest dispersed seed from a solitary individual), competitive ability (dominance in non-spreading context), and seed mass. Data to estimate height, dispersal and seed mass were from separate experiment than main experiment (see Methods). Note that ranks rather than raw data were used for analyses of all traits. See ReadMe associated with 'Furthest seed' datafile for metadata.
DOI: 10.5061/dryad.q7605/3
title: Genotypes in Generation 6

description: Genotype results after 6 generations of spread. 10 individuals were sampled from the leading edge (front) and 10 from the first pot in the array (back). See ReadMe associated with 'Furthest seed' datafile for metadata.
DOI: 10.5061/dryad.q7605/4
title: Location and seedling density for one replicate (Fig. 1B)

description: Number of seedlings in each pot in each generation for one replicate array in the experiment (continuous landscape, evolving treatment), as in Figure 1B. Seedlings were counted in 1 cm wide bins at the leading edge, and counted for the entire pot behind the leading edge. See ReadMe associated with 'Furthest seed' datafile for metadata.
DOI: 10.5061/dryad.r4847/5
title: Stable hydrogen isotope values of spring migrants and wintering Rallus limicola of unknown origin

description: δD of feathers collected from wintering Rallus limicola on the Louisiana and Texas coastal plains and from a spring migration stopover site in the Lake Erie marshes of Ohio, USA. Contour feathers were sampled from spring migrants to determine their winter provenance and primary feathers were sampled from wintering rails to determine their previous breeding location.
DOI: 10.5061/dryad.r4847/6
title: Probable breeding origins of Rallus limicola wintering in Texas and Louisiana, USA

description: Probable breeding origins of wintering Virginia rail (Rallus limicola) inferred from feather δD and species distributions models. Wintering rails were captured on the wintering grounds at five sites along the Gulf Coast, USA: (A) Anahuac National Wildlife Refuge, Texas; (B) Grand Cote National Wildlife Refuge, Louisiana; (C) McFaddin National Wildlife Refuge, Texas; (D) Rockefeller Wildlife Refuge 2004-05, Louisiana; (E) Rockefeller Wildlife Refuge 2006; and (F) Sherburne Wildlife Management Area, Louisiana.
DOI: 10.5061/dryad.r4847/7
title: Probable winter origins of spring migrants from Lake Erie region, Ohio, USA

description: Winter provenance of migrating Virginia rails (Rallus limicola) captured at Ottawa National Wildlife Refuge (Ohio, USA), inferred from probability distributions based on stable hydrogen isotope analysis of feathers and species distributions models.
DOI: 10.5061/dryad.r8t33/1
title: Spatial data layers
DOI: 10.5061/dryad.rj592/1
title: Data on bees and elephants experiments in Gabon

description: This file contains all data related to experiments on how bees deter elephants. Those data have been harvested in Gamba, Gabon, Central Africa.
DOI: 10.5061/dryad.rj592/2
title: Data on bees activities and honey production correlation

description: This file contains data allowing correlation calculations between bees activities and honey production.
DOI: 10.5061/dryad.rj592/3
title: Data on bees activities and variables correlation

description: This file contains data allowing calculations of correlations between bees activities and studied variables
DOI: 10.5061/dryad.t6j72/1
title: Dryad Figures_Lu et al

description: Additional figures for Meemannia
DOI: 10.5061/dryad.t6j72/2
title: Supplemental Data 1

description: A large-format PDF for a phylogenetic tree depicting all character state transformations on internal nodes.
DOI: 10.5061/dryad.t6j72/3
title: Data Matrix_Lu et al

description: The Nexus format file of the data matrix of Meemannia
DOI: 10.5061/dryad.t6p8c/1
title: All data

description: Symbiodinium: host cell ratio, mortality and DGGE genotype over time
DOI: 10.5061/dryad.t6p8c/2
title: Temperatures

description: Temperature data
DOI: 10.5061/dryad.t6p8c/3
title: visual bleaching data_LB

description: Visual bleaching data
DOI: 10.5061/dryad.t6p8c/4
title: KeppelsThresholds

description: Bleaching threshold Keppels
DOI: 10.5061/dryad.t6p8c/5
title: DaviesThresholds

description: Bleaching thresholds Davies
DOI: 10.5061/dryad.t6p8c/6
title: MaggieThresholds

description: Bleaching thresholds Magnetic Island
DOI: 10.5061/dryad.tk05d/1
title: Dryad_Sarquis_MacShack_InfectivityData

description: Outcome and severity of infections for 24 song sparrows experimentally inoculated with Plasmodium. Spreadsheet includes sex, capture date and location, and previous infection status for these birds plus 8 others used in the experiment as donors, amplifiers and controls. Parasite loads expressed as # parasites per 10,000 erythrocytes.
DOI: 10.5061/dryad.v5300/1
title: Maternal programming of offspring
DOI: 10.5061/dryad.0nr5s/1
title: Phylogenies

description: Six sets of phylogenetic trees derived from differing data sets and levels of constraint. Analyses were conducted on all sets of trees.
DOI: 10.5061/dryad.0nr5s/2
title: Discrete character-taxon matrix

description: Character-taxon matrix used for the reconstruction of character transitions on the tree, and the subsequent calculation of rates.
DOI: 10.5061/dryad.0nr5s/3
title: R Code

description: Code used to run the dating and evolutionary rates analyses in R.
DOI: 10.5061/dryad.158m0/1
title: molecular sequences from 54 primate genes

description: Molecular sequence data, used for the PTP tests, the tree-to-tree agreement test, and for the tests in companion papers (Bontrager et al. and Larget et al.). The archive contains aligned sequences for 54 primate genes, for a total of 178 species, originally from Perelman et al. 2011 (http://dx.doi.org/10.1371/journal.pgen.1001342).
DOI: 10.5061/dryad.23cm3/1
title: InesKlemmeEtAl_data

description: Personality data obtained in the laboratory.
DOI: 10.5061/dryad.365b0/1
title: ALS_ENFAMS

description: This data file contains all variables used for the analyses reported in our article published in PLOS One. It is a CSV file that contains 41 variables for 801 subjects. Data originate from the ENFAMS survey, a cross-sectional survey on sheltered homeless families in the Greater Paris Area in 2013.  Further description of the data is available in the ReadMe file.
DOI: 10.5061/dryad.3s6j7/1
title: Protocol characteristics

description: Protocol characteristics on individual trial protocol level
DOI: 10.5061/dryad.3s6j7/2
title: Merged dataset of protocol and publication

description: Merged datasets of protocols and resulting journal publications on individual trial level.
DOI: 10.5061/dryad.41qh7/1
title: Effect of sea surface temperature on booby reproductive behaviors

description: Data were acquired through field observations, long-term monitoring of the breeding colony, and publicly available climate data. Data are provided in the "Data" sheet, and column headings are defined in the "Description" sheet of the excel workbook.
DOI: 10.5061/dryad.4kr93/1
title: Alignment of partial sequences of the CHD gene located in the Z-chromosome of Gyps fulvus, Milvus migrans and Neophron percnopterus

description: DNA sequences of the CHD-Z fragments of Gyps fulvus, Milvus migrans and Neophron percnopterus used for design of LAMP primers suitable for sex determination. These sequences were obtained after Sanger sequencing of the CHD-Z fragments obtained by PCR using 2550F and 2718R primers (Fridolfsson & Ellegren 1999)
DOI: 10.5061/dryad.5q27k/2
title: Madagascar insecurity data

description: The data instrument is attached to the manuscript file as supplementary information. Michigan State University’s Committee on Research Involving Human Subjects IRB# x10-394 reviewed and approved all methods and procedures used in this research. A committee-approved informed consent was obtained in verbal form due to potential participant illiteracy. In instances where participants approved use of a digital voice recorder, consent was documented digitally. In all instances, participants had to verbally consent to participate in the study before data collection commenced.
DOI: 10.5061/dryad.62fv1/1
title: Temperature Experiment

description: Measurement of microbial biofilms single cells autofluorescence by flow cytometry, after exposure of the biofilm to an increase in temperature. For details, please consult the readme file and the associated publciation.
DOI: 10.5061/dryad.62fv1/2
title: Field samples

description: Autofluorescence based flow-cytometry of microbial biofilm samples, taken from six different sites along the stream monhaltorferAa. For details, consult the readme file and the associated publication.
DOI: 10.5061/dryad.62q6n/1
title: TASSLEgeno15239Ind237vfinal_genotype.hmp

description: The input file of genotypes for the program TASSLE which was used to perform the univariate GWAS for this study.
DOI: 10.5061/dryad.62q6n/2
title: TASSLE_input15239Ind237vfinal_covtraits

description: This file contains the population structure individual Q values that were used as trait covariates in the program TASSLE to perform a univariate GWAS.  Included are the individual proportions of ancestry using a K=6 and a K=10.  For the analyses reported in the study, we used K=10, but we mentioned examining results with K=6 in the supplemental methods.
DOI: 10.5061/dryad.62q6n/3
title: TASSLE_input15239Ind237vfinal_traits

description: This file contains additional traits and covariates that were used to perform a univariate GWAS in TASSLE.  Covariates include collection "year", and gender (1=male, 2=female).  The trait phenotype is listed as "Dayreorder" which represents migration-timing in units of ordinal day as the phenotype.  We "re-ordered" these days to reflect the biological sequence of annual steelhead migrations.  Refer to the methods in the study for more detail.
DOI: 10.5061/dryad.65m87/1
title: Case_Study_1_plant_height_Corn

description: Raw data sample and ground truth data for corn plant height estimate in case study 1.
DOI: 10.5061/dryad.65m87/2
title: Case_Study_1_plant_height_Sorghum

description: Raw individual images with gps log and ground truth data for the sorghum plant height estimate in case study 1.
DOI: 10.5061/dryad.65m87/3
title: Case_Study_2_winter_wheat_biophysical

description: Raw individual images with gps log and ground truth data for case study 2 winter wheat biophysical properties study.
DOI: 10.5061/dryad.65m87/4
title: Case_Study_3_soil_plant_interaction_RGB

description: Raw RGB images with gps log and ground truth data for case study 3 soil and plants interaction. The RGB and NIR images were split as two files due to the file size limit.
DOI: 10.5061/dryad.65m87/5
title: Case_Study_3_soil_plant_interaction_NIR

description: Raw NIR images with gps log and ground truth data for case study 3 soil and plants interaction. The RGB and NIR images were split as two files due to the file size limit.
DOI: 10.5061/dryad.65m87/6
title: Case_Study_4_weed_management_evaluation_Raw_Image_Data_1_of_10

description: Part 1 of 10 of raw individual images with gps log and ground truth. GPS log and ground truth are in part 10.
DOI: 10.5061/dryad.65m87/7
title: Case_Study_4_weed_management_evaluation_Raw_Image_Data_2_of_10

description: Part 2 of 10 of raw individual images with gps log and ground truth. GPS log and ground truth are in part 10.
DOI: 10.5061/dryad.65m87/8
title: Case_Study_4_weed_management_evaluation_Raw_Image_Data_3_of_10

description: Part 3 of 10 of raw individual images with gps log and ground truth. GPS log and ground truth are in part 10.
DOI: 10.5061/dryad.885c4/1
title: Rubalcaba_et_al
DOI: 10.5061/dryad.908g4/4
title: Allen_et_al_mtDNA_tree

description: Nexus mtDNA input file. Identical haplotypes are collapsed.
DOI: 10.5061/dryad.b46k4/1
title: Data_Bourgeois_et_al_2016_JApplEcol
DOI: 10.5061/dryad.d22f7/1
title: Ant size, effect of wind and load area
DOI: 10.5061/dryad.f809j/3
title: Territoriality information of Libellulidae dragonflies

description: This file contains information on whether a species is territorial or non-territorial (see main text for more information).
DOI: 10.5061/dryad.g6s2k/1
title: RecSeq_files_for_Callender_et_al_2016
DOI: 10.5061/dryad.j5q12/1
title: Fish genotypes

description: Genotypes of the Pungitius pungitius used for the paper
DOI: 10.5061/dryad.k3234/1
title: Moose data with annual individual records

description: Annual records of individual moose (alces alces) survival and reproduction for the years years 2000-2011. Contact the authors for further information.
DOI: 10.5061/dryad.k3234/2
title: Moose data with phenotypes by cohort

description: Data on bodymass (1 year old) and birth date for individual moose (Alces alces) born in the years 1991-2010. Contact the authors for further information.
DOI: 10.5061/dryad.k3234/3
title: Moose data with informative pedigree

description: A pedigree for moose (Alces alces) informative with respect to individuals measured for body mass (1 year old) and birth date in the cohorts 1991-2010. Contact the authors for further information.
DOI: 10.5061/dryad.k3h00/1
title: Lorente, Chornogubsky, Goin - Australidelphian tarsals from Patagonia

description: Data matrix modified from Beck (2012).
DOI: 10.5061/dryad.k3h00/2
title: Synapomorphies

description: List of synapomorphies for "New tarsal remains suggest the existence of non microbiotherian Australidelphian marsupials (Diprotodontia) in the Eocene of Patagonia"
DOI: 10.5061/dryad.kk85k/2
title: Historical Projections

description: HistoricalProjections -&gt; HabitatSuitabilityhs1979-hs2013 are spatial layers that distinguish 32 ha cells in Michigan, USA as nonsuitable (0), low suitability (1), moderate suitability (2), and high suitability (3) habitat for Kirtland's warbler annually between 1979 and 2013. The layers can be used as input files for the Spatial Data subprogram in program RAMAS GIS.HistoricalProjections -&gt; Precipitationp1979-p2013 are spatial layers that contain total March precipitation values for the Nassau NOAA station (Bahamas) annually between 1979 and 2013 in cells that contain suitable habitat for Kirtland's warbler. The layers can be used as input files for the Spatial Data subprogram in program RAMAS GIS.