cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10581184
title: Estimation of forest height and biomass from open-access multi-sensor satellite imagery and GEDI Lidar data: high-resolution maps of metropolitan France

description: Maps of forest height, aboveground biomass (AGB)* and volume (VOL)* at 10 m spatial resolution for the year 2020 on France. 

* AGB and Volume maps are available on request.

The methodology and validation of the maps are presented here: https://hal.science/hal-04249151

Please cite :

David Morin, Milena Planells, Stéphane Mermoz, Florian Mouret. Estimation of forest height and biomass from open-access multi-sensor satellite imagery and GEDI Lidar data: high-resolution maps of metropolitan France. 2023. hal-04249151
DOI: 10.5281/zenodo.8071003
title: Estimation of forest height and biomass from open-access multi-sensor satellite imagery and GEDI Lidar data: high-resolution maps of metropolitan France

description: Maps of forest height, aboveground biomass (AGB)* and volume (VOL)* at 10 m spatial resolution for the year 2020 on France. 

* AGB and Volume maps are available on request.

The methodology and validation of the maps are presented here: https://hal.science/hal-04249151

Please cite :

David Morin, Milena Planells, Stéphane Mermoz, Florian Mouret. Estimation of forest height and biomass from open-access multi-sensor satellite imagery and GEDI Lidar data: high-resolution maps of metropolitan France. 2023. hal-04249151
DOI: 10.5281/zenodo.8071004
title: Estimation of forest height and biomass from open-access multi-sensor satellite imagery and GEDI Lidar data: high-resolution maps of metropolitan France

description: Maps of forest height, aboveground biomass (AGB) and volume (VOL) at 10 m spatial resolution for the year 2020 on France.
The methodology and validation of the maps are presented here: https://hal.science/hal-04249151
Please cite :
David Morin, Milena Planells, Stéphane Mermoz, Florian Mouret. Estimation of forest height and biomass from open-access multi-sensor satellite imagery and GEDI Lidar data: high-resolution maps of metropolitan France. 2023. hal-04249151
DOI: 10.48443/jnwy-xy08
title: Photosynthetically active radiation below water surface (DP1.20261.001)
title: RELEASE-2024

description: Photosynthetically active radiation below water is measured at 1 Hz at lake littoral sensor sets and twice per minute on buoys at lake and river sites. It is reported as 1-minute mean measurements and 30-minute mean values.

Latency: Data collected in any given month are published during the second full week of the following month.
description: The littoral sensor sets measure PAR below water surface along with water level and temperature. The buoys, deployed at both lakes and rivers, are comprised of sensor sets which measure meteorological parameters over a water surface along with submerged sensors that measure physical and chemical parameters of the water body. Some of these sensors are unique to the buoy subsystem and others are shared with other NEON subsystems, such as the wadeable stream sensor sets or terrestrial towers. Due to power, space, and data storage constraints on the buoy, the configuration of sensors deployed on a buoy may be different than those in other parts of NEON. Instrumentation: LI-COR LI-192A underwater PAR sensor
DOI: 10.5281/zenodo.10578629
title: IBDmix calls of introgressed Neanderthal sequences in individuals from the 1000 Genomics Project populations

description: This submission provides DNA sequence regions predicted to be introgressed from Neanderthals in individuals from the 1000 Genomes Project. The calls were generated using a new IBDmix (https://github.com/PrincetonUniversity/IBDmix) analysis framework that uses genetic distance as opposed to physical distance in measuring segment size. Calls are provided using Altai, Vindija, and Chagyrskaya as the Neanderthal archaic reference genome.
DOI: 10.48443/d0a9-qn91
title: Plant phenology observations (DP1.10055.001)
title: RELEASE-2024

description: This data product contains the quality-controlled, native sampling resolution data from in-situ observations of plant leaf development and reproductive phenophases, at each of NEON's terrestrial sites. Phenophase status and intensity definitions follow those of the USA National Phenology Network (USA-NPN). Status and intensity data are reported per phenophase per individual or patch, for each day observed. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

phe_perindividual: 30

phe_perindividualperyear: 30

phe_statusintensity: 30

phe_identificationHistory: 7
description: 90-100 individual plants or plant patches are monitored at each site. Individuals of 3 dominant species at each site are targeted for monitoring during initial operations After which the pool of species monitored may expand up to 20 species. Sampling intervals at sites with clear seasonal patterns varies based on plant activitiy, ranging from 2-3x weekly during periods of rapid phenological transition to much less frequently during other times of year. Sites with less defined growing season are monitored year-round at weekly intervals. NEON employs status-based monitoring in which the phenological condition of an individual is reported any time that individual is observed. Depending on the growth form, an individual may have between 1 and 7 phenophases reported per observation event. Instrumentation:
DOI: 10.17632/h7wk8jfpdx.1
title: Identity fusion, interpersonal trust, and solidarity among Mexican soccer fans

description: Our study looks at the interplay among identity fusion theory, interpersonal trust, and solidarity among Mexican football fans. A composite survey using two existing scales was distributed online to male followers of one of the 18 teams that make up the first division of the Mexican football league. There were 601 responses in numbers proportional to the number of fans of each team. The first scale measures identity fusion (Gómez et al., 2011). The second scale uses the questions regarding trust and solidarity from Grootaert et al's. (2003) measure of social capital. Responses are in Spanish.
DOI: 10.48443/zj63-h785
title: Precipitation (DP1.00006.001)
title: RELEASE-2024

description: Up to three methods are used to determine bulk precipitation at each site. Primary - weighing gauge housed within a small double fence intercomparison reference (DFIR). Secondary - tipping bucket located on the top of the tower at terrestrial sites or at approx. 1.5 m above the ground at aquatic sites. Throughfall - tipping buckets below the canopy and equipped with troughs extending outward from the tipping bucket. Note that throughfall sensors are unheated to avoid melting the surrounding seasonal snowpack, therefore solid precipitation will only be recorded when it melts. However, the lag time between solid precipitation falling and subsequently melting means that measurements of melting solid precipitation may be less reliable than liquid precipitation because, for example, wind may blow snow off the throughfall collector prior to melting. 

Latency:
Data collected in any given month are published during the second full week of the following month.
description: Precipitation records are fundamental to understanding water availability in an ecosystem. In turn, evapotranspiration and latent heat fluxes can be better understood and climate conditions can be better modeled. Bulk precipitation measured using a DFIR and a weighing gauge is known to provide improved results over tipping bucket measurements. Thus, the weighing gauge surrounded by the DFIR is considered the “primary” method, while the tipping bucket is referred to as the “secondary” method. Throughfall precipitation informs interception of precipitation by the canopy and pass-through to the soil surface. Instrumentation: Belfort AEPG II 600M weighing gauge (primary precipitation), Met One 372 tipping bucket (non-heated; secondary precipitation and throughfall) and 379 tipping bucket (heated; secondary precipitation)
DOI: 10.48443/4z25-4b94
title: Reaeration field and lab collection (DP1.20190.001)
title: RELEASE-2024

description: This data product contains the quality-controlled, native sampling resolution data from NEON's wadeable stream reaeration sampling protocol. During most reaeration experiments, grab samples of stream water at NEON aquatic sites are collected in streams at 4 sampling locations downstream of a continuous injection of an inert gas (SF6) and conservative tracer (NaCl or NaBr). Background samples are collected prior to tracer injection and are analyzed for background salt tracer concentrations. Plateau samples are collected once the tracer concentration reaches a constant concentration (as measured by conductivity) and 5 replicate samples from each station are analyzed for both salt and gas tracer concentrations. Data users should refer to the user guide for reaeration and salt-based discharge see `NEON_ReaerSaltBasedQ_userGuide` for suggestions on how to calculate reaeration rates from the published data packages. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage. During some reaeration experiments, denoted by injectionType “model - slug” or “model - CRI”, only the conservative tracer is injected, either via slug or constant rate, (i.e., inert gas is not injected). See NEON Data Product User Guide to Reaeration (DP1.20190.001) and Salt-based Discharge Sampling (DP1.20193.001) for more detail about when and where model type injections are used.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

rea_backgroundFieldCondData: 30

rea_backgroundFieldSaltData: 30

rea_conductivityFieldData: 30

rea_externalLabDataGas: 120

rea_externalLabDataSalt: 120

rea_fieldData: 30

rea_plateauMeasurementFieldData: 30

rea_plateauSampleFieldData: 30

rea_widthFieldData: 30

sdg_externalLabSummaryData: 14
description: Tracer injections are completed 6 times per year to capture a range of flows at NEON wadeable stream sites. The first sampling station is located near sensor set #1 and the fourth sampling station is located near sensor set #2. Sampling stations #2 and #3 are approximately evenly spaced between sampling stations #1 and #4. The injection (drip) station is located far enough upstream of sampling station #1 that the tracer is well mixed within the stream channel for all sampling stations. Conductivity data loggers are located near sampling stations #1 and #4 to capture the rising limb and plateau (for constant rate injections) and falling limb (for slug injections) in situ conductivity values. Instrumentation: YSI Pro2030, HOBO U24
DOI: 10.48443/k9vk-5k27
title: Relative humidity (DP1.00098.001)
title: RELEASE-2024

description: This data product contains the relative humidity, air temperature, and dew point/frost point temperature measurements made at all NEON sites. It is reported as 1-minute mean measurements and 30-minute mean values.

Latency:
Data collected in any given month are published during the second full week of the following month.
description: The sensors are installed at the top level of the tower infrastructure, at the soil array and on the aquatic met station at a standard height above ground level. Instrumentation: Vaisala HUMICAP Humidity and Temperature Probe - HMP 155
DOI: 10.48443/as20-y234
title: Relative humidity above water on-buoy (DP1.20271.001)
title: RELEASE-2024

description: Relative humidity on buoys is measured every minute and is reported as 1-minute instantaneous measurements and 30-minute mean values. Other than the data collection frequency, this data product has the same data streams and processing as relative humidity measured at aquatic met stations and on the terrestrial instrument towers.

Latency:
Data collected in any given month are published during the second full week of the following month.
description: The buoys are comprised of sensor sets which measure meteorological parameters over a water surface along with submerged sensors that measure physical and chemical parameters of the water body. Some of these sensors are unique to the buoy subsystem and others are shared with other NEON subsystems, such as the wadeable stream sensor sets or terrestrial towers. Due to power, space, and data storage constraints on the buoy, the configuration of sensors deployed on a buoy may be different than those in other parts of NEON. Instrumentation: Vaisala HUMICAP Humidity and Temperature Probe - HMP 155
DOI: 10.48443/208r-nf25
title: Riparian composition and structure (DP1.20275.001)
title: RELEASE-2024

description: This data product contains the quality-controlled, native sampling resolution data from the composition and structure components of NEON's riparian habitat assessment protocol. This protocol provides a rapid estimate of the riparian vegetation, human impacts, and bank characteristics at NEON Aquatic lakes, rivers, and streams. For additional details, see protocol [NEON.DOC. 003826] (http://data.neonscience.org/api/v0/documents/NEON.DOC.003826vB): AOS Protocol and Procedure: Riparian Habitat Assessment and science design [NEON.DOC.001152](http://data.neonscience.org/api/v0/documents/NEON.DOC.001152vA): Aquatic Sampling Design.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

rip_assessment: 30
description: Each aquatic site is surveyed once per year within the site-specific peak greenness window. Ten riparian transects are evenly distributed throughout the 1km wadeable stream biological sampling reach. At lake sites, 10 evenly spaced transects are established around the lake perimeter. Large river sites include 5 right bank and 5 left bank transects that are evenly spaced throughout the 1km reach. At each transect the physical habitat is characterized including vegetation structure and composition, dominant plant species, bank characteristics including bank angle, revetment, and bank texture. Instrumentation: NA
DOI: 10.48443/zcz0-xr50
title: Riparian vegetation % cover (DP1.20191.001)
title: RELEASE-2024

description: This data product contains the quality-controlled, native sampling resolution data from the stream canopy cover component of NEON's riparian habitat assessment protocol. Using a modified convex densiometer, 1/3 (17 points) of the view field is used to measure the riparian canopy cover at wadeable stream sites. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

rip_percentComposition: 30
description: Each aquatic site is surveyed once per year within the site-specific peak greenness window. As part of the survey percent riparian cover is collected at wadeable stream and river sites, but not collected at lake sites. Protocols are based on the U.S. EPA's Statewide Riparian Mapping protocol.
Ten riparian transects are evenly distributed throughout the 1km wadeable stream sampling reach. At wadeable stream sites, at each transect, riparian canopy percent cover measurements are taken at 3 points along each transect: the wetted center of the stream, 0.3m from the wettted edge of the left bank, and 0.3 m from wetted edge of the right bank. At the center stream sampling point, 4 densiometer readings are taken facing upstream, downstream, river right, and river left; at the left and right banks a single densiometer reading is taken, facing the bank. 
 At river sites, percent canopy cover is collected at 1 point located about 0.3m from the wetted river edge at five of ten paired plots. The plot nearest the river thalweg is selected and the following measurements are collected from the boat at 0.3m above the water: upstream, downstream, river right, and river left. Instrumentation:
DOI: 10.48443/zxc3-zx62
title: Root biomass and chemistry, Megapit (DP1.10066.001)
title: RELEASE-2024

description: This data product contains the quality-controlled, native sampling resolution data from NEON's belowground plant biomass stock and chemistry measurements from Megapits. Soil samples were collected at 10 cm depth increments to the first 100 cm below the surface, then 20 cm depth increments thereafter, along three vertical profiles from a single temporary soil pit at a location expected to be representative of NEON sensor-based soil plots. This sampling activity is expected to occur once at each NEON terrestrial site. Root material is sorted, dried, weighed, and analyzed, then any excess root sample material is archived in the NEON Biorepository and are available on request. For additional details, see the user guide, protocols, and science design listed in the Documentation section below. Products resulting from this sampling include root biomass by size class and live/dead status, as well as root chemistry and stable isotope ratios. A summary table of external lab precision and accuracy is included in the expanded package.

Latency:
Data were collected once, at the establishment of each site. Data were published within one year of collection, and future collections at existing sites are not expected.
description: Each site is sampled a single time. At each site, a soil Megapit is dug in the dominant soil type to a maximum depth of 2 m. On the exposed face of the soil pit, a tape measure visually divides the soil profile into 10 cm depth increments. Each soil pit has three vertically-oriented sampling profiles, roughly corresponding to the left, center, and right of the pit sampling face. These profiles are referred to as profile number 1, 2 and 3, respectively. From each profile, a block of soil is removed from each 10 cm depth increment, starting from the surface down to 100 cm. Once a depth of 100 cm is reached, the each profile is divided into 20 cm depth increments. By the end of sampling, up to 45 soil samples are collected, 15 per profile. Roots are sieved and then divided into four categories distinguishing between status (alive or dead) and size (&gt; 2mm and &lt; 2 mm, unless otherwise noted). Once roots are weighed and dried, they are sent to an external laboratory for analysis of carbon and nitrogen concentrations and stable isotopes. Any remaining root material is held in the NEON Biorepository and available upon request. Instrumentation:
DOI: 10.5281/zenodo.10571320
title: Kirov UFSIN News Crawl Pt.2

description: WARC files produced by a webcrawl of Kirov UFSIN news online resource. WARC reader is necessary to view files.
DOI: 10.5281/zenodo.10571321
title: Kirov UFSIN News Crawl Pt.2

description: WARC files produced by a webcrawl of Kirov UFSIN news online resource. WARC reader is necessary to view files.
DOI: 10.5281/zenodo.10581243
title: Reduction of NQO1 wildtype by NADH

description: Raw data published in: Anoz-Carbonell E, Timson DJ, Pey AL, Medina M. The Catalytic Cycle of the Antioxidant and Cancer-Associated Human NQO1 Enzyme: Hydride Transfer, Conformational Dynamics and Functional Cooperativity. Antioxidants (Basel). 2020 Aug 20;9(9):772. doi: 10.3390/antiox9090772. PMID: 32825392; PMCID: PMC7554937.

Data measured using a stopped-flow spectrophotometer from Applied Photophysics (SX.18MV, Applied Photophysics Ltd., Leatherhead, UK) interfaced with a photodiode array detector and under anaerobic conditions, following previously established protocols. Multiple wavelength absorption data in the flavin absorption region (400-900 nm) were collected and processed using the ProData-SX software (Applied Photophysics Ltd.). Time-dependent spectral deconvolution was performed by global analysis and numerical integration methods using Pro-Kineticist (Applied Photophysics Ltd.). Collected data were fitted to either single- or multi-step (A→B→n….→Z) models allowing for estimation of the corresponding observed conversion rate constants at each NADH concentration, as well of the spectra of intermediate and final species.

NQO1ox (7.5 μM) was mixed with NADH/D at concentrations ranging from 1:1 to 1:14 NQO1ox:NADH ratio. Reactions were studied in 20 mM HEPES-KOH, pH 7.4 with glucose/glucose oxidase (310 mM/10 units/mL), at 25 C.

Spectral evolution of NQO1 reductive half-reaction with NADH at different concentrations. Files are numbered from 1 to 7 representing the following NADH concentrations: 7.5, 10, 15, 20, 30, 50 and 100 uM of NADH.
DOI: 10.5281/zenodo.10581299
title: Reduction of NQO1 wildtype by NADD

description: Raw data published in: Anoz-Carbonell E, Timson DJ, Pey AL, Medina M. The Catalytic Cycle of the Antioxidant and Cancer-Associated Human NQO1 Enzyme: Hydride Transfer, Conformational Dynamics and Functional Cooperativity. Antioxidants (Basel). 2020 Aug 20;9(9):772. doi: 10.3390/antiox9090772. PMID: 32825392; PMCID: PMC7554937.

Data measured using a stopped-flow spectrophotometer from Applied Photophysics (SX.18MV, Applied Photophysics Ltd., Leatherhead, UK) interfaced with a photodiode array detector and under anaerobic conditions, following previously established protocols. Multiple wavelength absorption data in the flavin absorption region (400-900 nm) were collected and processed using the ProData-SX software (Applied Photophysics Ltd.). Time-dependent spectral deconvolution was performed by global analysis and numerical integration methods using Pro-Kineticist (Applied Photophysics Ltd.). Collected data were fitted to either single- or multi-step (A→B→n….→Z) models allowing for estimation of the corresponding observed conversion rate constants at each NADH concentration, as well of the spectra of intermediate and final species.

NQO1ox (7.5 μM) was mixed with NADD at concentrations ranging from 1:1 to 1:14 NQO1ox:NADH ratio. Reactions were studied in 20 mM HEPES-KOH, pH 7.4 with glucose/glucose oxidase (310 mM/10 units/mL), at 25 C.

Spectral evolution of NQO1 reductive half-reaction with NADD at different concentrations. Files are numbered from 1 to 7 representing the following NADD concentrations: 7.5, 10, 15, 20, 30, 50 and 100 uM of NADD.