cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/155152
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL2304 using a CCTech C-Nav 2000 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155156
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL2304 using a CCTech C-Nav 3050 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155153
title: Gravimeter data collected during research cruise MGL2304 using a Bell BGM-3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155151
title: Gyrocompass data collected during research cruise MGL2304 using a Kongsberg Simrad GC80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155154
title: INS (Inertial Navigation System) data collected during research cruise MGL2304 using a Applanix POS/MV-320 V3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.7823581
title: Modified LRphase and Simulated Dataset for "LRphase: an efficient algorithm for assigning haplotypic identity to long reads"

description: <strong>A modified version of LRphase was used to simulate reads for a single hypothetical human genome with maternal and paternal phasing information. Briefly, haplotype-specific reference sequences were generated with `bcftools consensus` (Li 2011) based on the rescued GIAB VCF and hg38 human reference sequence. Each haplotype-specific fasta was fed separately into pbsim2 (Ono, Asai, and Hamada 2021) as the reference from which simulated reads were randomly drawn, up to 1X coverage. Parameters controlling the read length distribution, sequencing, and base calling error rates were set to emulate typical performance of the MinIon sequencing platform with flow cell version R10.4.1 (https://nanoporetech.com/products/minion). These are as follows: `--depth 1 –hmm_model R103.model --difference-ratio '23:31:46' --length-mean 25000 --length-min 100 --length-max 1000000 –length-sd 20000 --accuracy-mean 0.98 --accuracy-min 0.01 --accuracy-max 1.00`. Simulated reads were aligned to the hg38 reference genome with minimap2 (Li 2018) and correct phasing and alignment coordinates were encoded in the read names. Finally, samtools (Li et al. 2009) was used to remove duplicated and supplementary reads, and concatenate, sort, and index reads into a single combined bam file. Of 258,539 total reads, 246,210 were mappable, and 178,504 overlapped at least one heterozygous variant in HG001.</strong>
DOI: 10.5281/zenodo.7823582
title: Modified LRphase and Simulated Dataset for "LRphase: an efficient algorithm for assigning haplotypic identity to long reads"

description: <strong>A modified version of LRphase was used to simulate reads for a single hypothetical human genome with maternal and paternal phasing information. Briefly, haplotype-specific reference sequences were generated with `bcftools consensus` (Li 2011) based on the rescued GIAB VCF and hg38 human reference sequence. Each haplotype-specific fasta was fed separately into pbsim2 (Ono, Asai, and Hamada 2021) as the reference from which simulated reads were randomly drawn, up to 1X coverage. Parameters controlling the read length distribution, sequencing, and base calling error rates were set to emulate typical performance of the MinIon sequencing platform with flow cell version R10.4.1 (https://nanoporetech.com/products/minion). These are as follows: `--depth 1 –hmm_model R103.model --difference-ratio '23:31:46' --length-mean 25000 --length-min 100 --length-max 1000000 –length-sd 20000 --accuracy-mean 0.98 --accuracy-min 0.01 --accuracy-max 1.00`. Simulated reads were aligned to the hg38 reference genome with minimap2 (Li 2018) and correct phasing and alignment coordinates were encoded in the read names. Finally, samtools (Li et al. 2009) was used to remove duplicated and supplementary reads, and concatenate, sort, and index reads into a single combined bam file. Of 258,539 total reads, 246,210 were mappable, and 178,504 overlapped at least one heterozygous variant in HG001.</strong>
DOI: 10.5281/zenodo.8436101
title: Modified LRphase and Simulated Dataset for "LRphase: an efficient algorithm for assigning haplotypic identity to long reads"

description: <strong>A modified version of LRphase was used to simulate reads for a single hypothetical human genome with maternal and paternal phasing information. Briefly, haplotype-specific reference sequences were generated with `bcftools consensus` (Li 2011) based on the rescued GIAB VCF and hg38 human reference sequence. Each haplotype-specific fasta was fed separately into pbsim2 (Ono, Asai, and Hamada 2021) as the reference from which simulated reads were randomly drawn, up to 1X coverage. Parameters controlling the read length distribution, sequencing, and base calling error rates were set to emulate typical performance of the MinIon sequencing platform with flow cell version R10.4.1 (https://nanoporetech.com/products/minion). These are as follows: `--depth 1 –hmm_model R103.model --difference-ratio '23:31:46' --length-mean 25000 --length-min 100 --length-max 1000000 –length-sd 20000 --accuracy-mean 0.98 --accuracy-min 0.01 --accuracy-max 1.00`. Simulated reads were aligned to the hg38 reference genome with minimap2 (Li 2018) and correct phasing and alignment coordinates were encoded in the read names. Finally, samtools (Li et al. 2009) was used to remove duplicated and supplementary reads, and concatenate, sort, and index reads into a single combined bam file. Of 258,539 total reads, 246,210 were mappable, and 178,504 overlapped at least one heterozygous variant in HG001.</strong>
DOI: 10.7284/155161
title: INS (Inertial Navigation System) data collected during research cruise MGL2304 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155149
title: Magnetometer data collected during research cruise MGL2304 using a Geometrics G-882 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155160
title: Meteorological Station data collected during research cruise MGL2304 using a Vaisala WXT520 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155162
title: Multibeam Echosounder data collected during research cruise MGL2304 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155163
title: Multibeam Echosounder data collected during research cruise MGL2304 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155150
title: Singlebeam Echosounder data collected during research cruise MGL2304 using a Knudsen 3260 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155157
title: Speedlog data collected during research cruise MGL2304 using a Furuno DS-80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155159
title: SSV (Sound Speed Velocimeter) data collected during research cruise MGL2304 using a AML MicroSV instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/155158
title: TSG (Thermosalinograph) data collected during research cruise MGL2304 using a SeaBird SBE-45 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.24241159.v1
title: data

description: These data are presented in the article titled "Dopamine neuron activity evoked by food and food predictive cues is augmented by peripheral and central manipulations of glucose availability." These data have been processed as follows:Raw 405nm was subtracted from raw 465nm and then normalized by z-scoring each session.The data have then been downsampled from ~1kHz to 10HzThe data have then been stored in a .csv as long format with pertinent information (event onsets/offsets, treatments, etc.)
DOI: 10.1184/r1/21997787
title: Data Collected with Package Delivery VTOL Drone

description: This experiment was performed in order to empirically measure the energy use of electric Vertical Takeoff and Landing (VTOL) Unmanned Aerial Vehicles (UAVs). We autonomously direct a MakeFlyEasy Fighter VTOL drone to take off, carry a range of payload weights on two different flight patterns, and land. Between flights, we varied specified parameters through a set of discrete options, payload of 0 , 400 g and 800 g; altitude during cruise of 50 m and 100 m; and speed during cruise of 18 m/s and 22 m/s. We simultaneously collect data from a broad array of on-board sensors. The onboard sensors used to collect these data are * Wind sensor: FT Technologies FT205 UAV-mountable, pre-calibrated ultrasonic wind sensor with accuracy of ± 0.1 m/s and refresh rate of 10 Hz.; * Position: 3DM-GX5-45 GNSS/INS sensor pack. These sensors use a built-in Kalman filtering system to fuse the GPS and IMU data. The sensor has a maximum output rate of 10Hz with accuracy of ± 2 m$ RMS horizontal, ± 5 m$ RMS vertical. * Current and Voltage: Mauch Electronics PL-200 sensor. This sensor can record currents up to 200 A and voltages up to 33 V. Analogue readings from the sensor were converted into a digital format using an 8 channel 17 bit analogue-to-digital converter (ADC). Data syncing and recording was handled using the Robot Operating System (ROS) running on a low-power Raspberry Pi 4. Data was recorded on the Raspberry Pi's microSD card. The data provided by each sensor were synchronized to a frequency of approximately 5Hz using the ApproximateTime message filter policy of Robot Operating System (ROS). The number of flights performed varying operational parameters (payload, altitude, speed) was 75.
DOI: 10.1184/r1/21997787.v2
title: Data Collected with Package Delivery VTOL Drone

description: This experiment was performed in order to empirically measure the energy use of electric Vertical Takeoff and Landing (VTOL) Unmanned Aerial Vehicles (UAVs). We autonomously direct a MakeFlyEasy Fighter VTOL drone to take off, carry a range of payload weights on two different flight patterns, and land. Between flights, we varied specified parameters through a set of discrete options, payload of 0 , 400 g and 800 g; altitude during cruise of 50 m and 100 m; and speed during cruise of 18 m/s and 22 m/s. We simultaneously collect data from a broad array of on-board sensors. The onboard sensors used to collect these data are * Wind sensor: FT Technologies FT205 UAV-mountable, pre-calibrated ultrasonic wind sensor with accuracy of ± 0.1 m/s and refresh rate of 10 Hz.; * Position: 3DM-GX5-45 GNSS/INS sensor pack. These sensors use a built-in Kalman filtering system to fuse the GPS and IMU data. The sensor has a maximum output rate of 10Hz with accuracy of ± 2 m$ RMS horizontal, ± 5 m$ RMS vertical. * Current and Voltage: Mauch Electronics PL-200 sensor. This sensor can record currents up to 200 A and voltages up to 33 V. Analogue readings from the sensor were converted into a digital format using an 8 channel 17 bit analogue-to-digital converter (ADC). Data syncing and recording was handled using the Robot Operating System (ROS) running on a low-power Raspberry Pi 4. Data was recorded on the Raspberry Pi's microSD card. The data provided by each sensor were synchronized to a frequency of approximately 5Hz using the ApproximateTime message filter policy of Robot Operating System (ROS). The number of flights performed varying operational parameters (payload, altitude, speed) was 75.
DOI: 10.5281/zenodo.8435974
title: Never Happen Again study -- data

description: This file contains datasets associated with the research article "Cold waves likely never to happen again". All data (observations and CMIP6 models) needed to reproduce key results of this paper are included here. Data is spread over 4 directories, one for each event considered (Europe, China, Brazil, Texas). Each directory contains inputs and outputs. Directory 'input' includes time-series of: - CMIP6 model data for the covariate X, - CMIP6 model data for the variable Y used to define the event (eg TMn10d for Europe), - (pseudo-)observations from ERA5 for the covariate X, - (pseudo-)observations from ERA5 for the variable Y used to define the event (eg, TMn10d for Europe). Directory 'ouput' includes the key results from the statistical analysis: - Summary_CXCB.txt provides key numbers for probability and intensity of the events, in the factual and counter-factual world. - *paramsCXCB.nc provides the time-series of the fitted (posterior distribution) GEV coefficients (mu,sigma,xi). - *climCXCB.nc provides details about the event definition, the fitted non-stationary GEV parameters, the covariate X, and key outpus such as the estimated probability and intensity of the event.
DOI: 10.5281/zenodo.8435973
title: Never Happen Again study -- data

description: This file contains datasets associated with the research article "Cold waves likely never to happen again". All data (observations and CMIP6 models) needed to reproduce key results of this paper are included here. Data is spread over 4 directories, one for each event considered (Europe, China, Brazil, Texas). Each directory contains inputs and outputs. Directory 'input' includes time-series of: - CMIP6 model data for the covariate X, - CMIP6 model data for the variable Y used to define the event (eg TMn10d for Europe), - (pseudo-)observations from ERA5 for the covariate X, - (pseudo-)observations from ERA5 for the variable Y used to define the event (eg, TMn10d for Europe). Directory 'ouput' includes the key results from the statistical analysis: - Summary_CXCB.txt provides key numbers for probability and intensity of the events, in the factual and counter-factual world. - *paramsCXCB.nc provides the time-series of the fitted (posterior distribution) GEV coefficients (mu,sigma,xi). - *climCXCB.nc provides details about the event definition, the fitted non-stationary GEV parameters, the covariate X, and key outpus such as the estimated probability and intensity of the event.
DOI: 10.5517/ccdc.csd.cc2ddz5z
title: CCDC 2217001: Experimental Crystal Structure Determination

description: Related Article: Shuang Zhao, Yun Zhang, Rongkai Wu, Kailin Yin, Xin Hong, Dongbing Zhao|2023|Nat. Synth.|2|937|doi:10.1038/s44160-023-00325-3
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ddz60
title: CCDC 2217002: Experimental Crystal Structure Determination

description: Related Article: Shuang Zhao, Yun Zhang, Rongkai Wu, Kailin Yin, Xin Hong, Dongbing Zhao|2023|Nat. Synth.|2|937|doi:10.1038/s44160-023-00325-3
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ddz71
title: CCDC 2217003: Experimental Crystal Structure Determination

description: Related Article: Shuang Zhao, Yun Zhang, Rongkai Wu, Kailin Yin, Xin Hong, Dongbing Zhao|2023|Nat. Synth.|2|937|doi:10.1038/s44160-023-00325-3
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8436150
title: K2 Campaign 2 observations of EPIC 203354381

description: K2 Campaign 2 observations of the rapid rotator EPIC 203354381, 23 August 2014 to 10 November 2014. We downloaded the detrended light curve from the EVEREST catalog (Luger et al. 2016, AJ, 152, 100). This version excludes NaNs and 3\(\sigma\) flux outliers. In our paper <em>Optimal frequency-domain analysis for spacecraft time series: Introducing the missing-data multitaper power spectrum estimator, </em>we trimmed the first 50 observations in this data file before estimating the power spectrum; these observations record a stellar flare.
DOI: 10.5281/zenodo.8436149
title: K2 Campaign 2 observations of EPIC 203354381

description: K2 Campaign 2 observations of the rapid rotator EPIC 203354381, 23 August 2014 to 10 November 2014. We downloaded the detrended light curve from the EVEREST catalog (Luger et al. 2016, AJ, 152, 100). This version excludes NaNs and 3\(\sigma\) flux outliers. In our paper <em>Optimal frequency-domain analysis for spacecraft time series: Introducing the missing-data multitaper power spectrum estimator, </em>we trimmed the first 50 observations in this data file before estimating the power spectrum; these observations record a stellar flare.
DOI: 10.25625/ppc8us
title: Landscape Assessment (EFForTS - B08) pH of litter and soil 0-10 cm

description: Landscape Assessment sampling 2021, Sumatra, Indonesia pH (H2O) of litter and soil (0-10 cm) were measured using a digital pH meter (Hanna 208)
DOI: 10.6084/m9.figshare.24241159.v2
title: data

description: These data are presented in the article titled "Dopamine neuron activity evoked by food and food predictive cues is augmented by peripheral and central manipulations of glucose availability." These data have been processed as follows:Raw 405nm was subtracted from raw 465nm and then normalized by z-scoring each session.The data have then been downsampled from ~1kHz to 10HzThe data have then been stored in a .csv as long format with pertinent information (event onsets/offsets, treatments, etc.)
DOI: 10.5281/zenodo.8436180
title: CHEOPS observations of 55 Cnc

description: To demonstrate the spectral window shaping capabilities of the missing data multitaper power spectrum estimator, we used the timestamps from this set of 55 Cnc observations by CHEOPS (PI: B. Demory). The data file contains the timestamps [MJD], fluxes, and flux errors.
DOI: 10.5281/zenodo.8436179
title: CHEOPS observations of 55 Cnc

description: To demonstrate the spectral window shaping capabilities of the missing data multitaper power spectrum estimator, we used the timestamps from this set of 55 Cnc observations by CHEOPS (PI: B. Demory). The data file contains the timestamps [MJD], fluxes, and flux errors.
DOI: 10.5066/p9me2fln
title: Hydrologic analysis of flow and transport for the Everglades DPM experiments

description: Flow and transport of sediment and phosphorus through the low-gradient wetlands of the Everglades, FL were characterized using hydrologic, biological, geomorphic, and biogeochemical data as inputs to several types of simulations. The data were collected in the DPM (Decompartmentalization Physical Model) experimental high-flow facility in the central Everglades, FL. The DPM includes wetlands, canals, and levees bordering Water Conservation Area 3A (WCA-3A) to the northwest and Water Conservation Area 3B to the southeast. We simulated the hydrologic flow of WCA-3A water though several closely spaced culverts beneath the L-67A levee into DPM as flow spreading in a radial pattern through the wetland. The radial flow simulations characterize interactions between total flow entering though culverts beneath the L-67A levee, flow spreading angle in the wetland, vegetation roughness, water slope, water depth, and water flow speed in the wetland. Also, we used the one-dimensional transport model (OTIS) model to simulate the conservative transport of water along a central flow path through the wetland using specific conductivity as an environmental tracer. Reactive transport simulations with OTIS used observations of suspended sediment concentration (SSC) and total phosphorus (TP) to quantify the rate of removal of suspended sediment and total phosphorus from flowing water. Gross primary productivity (GPP) and ecosystem respiration (ER) along the flow path was assessed by simulating transport and reactivity of dissolved oxygen using MATLAB scripts. Furthermore, at the downstream end of the DPM we made simple steady-state water and chemical mass balance calculations to assess water, suspended sediment, and total phosphorus leaving the DPM by transport though a downstream gap in the L67-C levee into WCA-3B.
DOI: 10.5281/zenodo.8436197
title: Dataset for New Synthetic Partial Discharge Calibrator for Qualification of Partial Discharge Analyzers for Insulation Diagnosis of HVDC and HVAC Grids

description: Data set for the publication named: "New Synthetic Partial Discharge Calibrator for Qualification of Partial Discharge Analyzers for Insulation Diagnosis of HVDC and HVAC Grids"
DOI: 10.5281/zenodo.8436196
title: Dataset for New Synthetic Partial Discharge Calibrator for Qualification of Partial Discharge Analyzers for Insulation Diagnosis of HVDC and HVAC Grids

description: Data set for the publication named: "New Synthetic Partial Discharge Calibrator for Qualification of Partial Discharge Analyzers for Insulation Diagnosis of HVDC and HVAC Grids"
DOI: 10.5281/zenodo.8432076
title: PseudoBulk_PB_GC

description: PseudoBulk_PB_GC
DOI: 10.5281/zenodo.8432077
title: PseudoBulk_PB_GC

description: PseudoBulk_PB_GC
DOI: 10.5281/zenodo.8436198
title: PseudoBulk_PB_GC

description: PseudoBulk_PB_GC
DOI: 10.5519/qd.ca5alorw
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (15 records)
DOI: 10.5281/zenodo.8436233
title: 14CO2 flux data for CORSO

description: 14CO2 posterior fluxes and cosmogenic production from https://doi.org/10.5194/acp-16-5665-2016.
description: {"references": ["https://doi.org/10.5194/acp-16-5665-2016"]}
DOI: 10.5281/zenodo.8436232
title: 14CO2 flux data for CORSO

description: 14CO2 posterior fluxes and cosmogenic production from https://doi.org/10.5194/acp-16-5665-2016.
description: {"references": ["https://doi.org/10.5194/acp-16-5665-2016"]}