cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/dfmdj4ys8y.1
title: Private schools

description: This is data collected from private schools principals and teachers for the study about " Privatization of Education: Perceived Equity and Quality"
DOI: 10.17632/jpdb7r2txd.1
title: Structural and functional basis of the universal transcription factor NusG pro-pausing activity in Mycobacterium tuberculosis

description: NusG can either suppress RNAP pausing in E. coli or promote pausing in B. subtilis. All NusG family proteins bind RNAP by contacts of the NusG N-terminal domain (NGN) to anti-parallel alpha-helices on the conserved RNAP clamp domain. B. subtilis–like NusG exhibit pause enhancement via sequence specific binding of the NGN to a TTnTTT motif in the non-template DNA strand (nt-DNA) whereas E. coli–like NusGs lack affinity for nt-DNA bases. Little is known about pausing and NusG in the major human pathogen Mycobacterium tuberculosis (Mtb). Using biochemistry, and cryo-EM, we compared Mtb NusG to E. coli NusG with the same RNAP and in the same sequence context to decipher the structural and mechanistic bases of pro- vs anti-pausing NusG. We established that Mtb NusG promotes pausing by stabilizing a translocation-inhibited, swiveled PEC and interacting non-specifically with the nt-DNA. More specifically, Mtb NusG contacts the Beta-protrusion extensively creating a gap between NusG and the Beta-gate loop into which the single-stranded nt-DNA wedges forcing the –6 base to flip into a hydrophobic pocket. In contrast, E. coli NusG suppresses the same pause by contacting the Beta-protrusion and the Beta-gate loop to eliminate the gap between NusG and Beta-gate loop, which reverses swiveling and favors forward translocation. Further comparison of Mtb, E. coli, B. subtilis, and M. smegmatis NGNs using CRISPR-mediated mycobacterial genetics suggest that the pro-pausing NusG-NGN activity is required for robust cell growth of mycobacteria. The data shown herein represent original, and unprocessed biochemistry gels, western blot gels, and spot assay plates used to generate the main and supplemental figures in our Delbeau et al Molecular Cell paper. All gels and plates are labelled accordingly to help viewers identify and understand the important parts. These data were collected in triplicate using methods described in Delbeau et al.
DOI: 10.6084/m9.figshare.21899016
title: Supplemental File 7

description: Supplemental File 7. MCODE pathway analyses across comparisons.
DOI: 10.6084/m9.figshare.21899016.v1
title: Supplemental File 7

description: Supplemental File 7. MCODE pathway analyses across comparisons.
DOI: 10.6084/m9.figshare.22687594
title: Functional assignment based on fungal taxonomy

description: The table contains information on different guilds assigned based on taxonomical identification of fungi.
DOI: 10.17632/8rnk4fggd8.1
title: The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions.

description: Stress Granule Imaging for GF{-Ded1. GFP-Ngr1 and GFp-Dcp1
DOI: 10.6084/m9.figshare.21899394
title: Supplemental File 8

description: Supplemental File 8. All statistcal outcomes from Methylkit analyses.
DOI: 10.6084/m9.figshare.21899394.v1
title: Supplemental File 8

description: Supplemental File 8. All statistcal outcomes from Methylkit analyses.
DOI: 10.6084/m9.figshare.21899421
title: Supplemental Table 7

description: Supplemental Table 7. HOMER analyses using DMCs identified by Methylkit.
DOI: 10.6084/m9.figshare.21899421.v1
title: Supplemental Table 7

description: Supplemental Table 7. HOMER analyses using DMCs identified by Methylkit.
DOI: 10.34943/aa75aa65-fb59-46ef-a680-d6c4d6f6e77e
title: Endeavour North Current Meter Deployed 2011-09-13

description: The Nortek Aquadopp Current Meter A2L2495 was deployed on 2011-09-13 at Endeavour North. This north section of the Endeavour Hydrothermal Vents includes two moorings to monitor the regional circulation. This device is a Current Meter. Acoustic Current Meters (ACM) measure current speed and direction, using the Doppler Effect. Aquadopp current metres have a sensor head that contains 3 acoustic transducers, a tilt sensor, a temperature sensor and a pressure sensor. The instrument transmits a short pulse of sound, and then listens to its echo to measure the change in pitch or frequency. The change in pitch can determine the velocity of the current. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/0878cfa5-5fd3-41dc-a25f-d94778d5b744
title: Endeavour South Current Meter Deployed 2019-05-12

description: The Nortek Aquadopp Current Meter A2L2495 was deployed on 2019-05-12 at Endeavour South. This south section of the Endeavour Hydrothermal Vents includes two moorings to monitor the regional circulation. This device is a Current Meter. Acoustic Current Meters (ACM) measure current speed and direction, using the Doppler Effect. Aquadopp current metres have a sensor head that contains 3 acoustic transducers, a tilt sensor, a temperature sensor and a pressure sensor. The instrument transmits a short pulse of sound, and then listens to its echo to measure the change in pitch or frequency. The change in pitch can determine the velocity of the current. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.22687585
title: DDXPlus Dataset (English)

description: For full documentation, please see our Github repository. We are releasing under the CC-BY licence a new large-scale dataset for Automatic Symptom Detection (ASD) and Automatic Diagnosis (AD) systems in the medical domain. The dataset contains patients synthesized using a proprietary medical knowledge base and a commercial rule-based AD system. Patients in the dataset are characterized by their socio-demographic data, a pathology they are suffering from, a set of symptoms and antecedents related to this pathology, and a differential diagnosis. The symptoms and antecedents can be binary, categorical and multi-choice, with the potential of leading to more efficient and natural interactions between ASD/AD systems and patients. To the best of our knowledge, this is the first large-scale dataset that includes the differential diagnosis, and non-binary symptoms and antecedents. For more information, please check our paper.
DOI: 10.6084/m9.figshare.21899430
title: Supplemental Table 8

description: Supplemental Table 8. HOMER analyses using DMCs identified by MethylSig.
DOI: 10.6084/m9.figshare.21899430.v1
title: Supplemental Table 8

description: Supplemental Table 8. HOMER analyses using DMCs identified by MethylSig.
DOI: 10.6084/m9.figshare.21899451
title: Supplemental File 9

description: Supplemental File 9. MethylSig statistical outcomes.
DOI: 10.6084/m9.figshare.21899451.v1
title: Supplemental File 9

description: Supplemental File 9. MethylSig statistical outcomes.
DOI: 10.6084/m9.figshare.21899457.v1
title: Supplemental File 10

description: Supplemental File 10. Concensus DMC methylation results between methylKit and methylSig.
DOI: 10.6084/m9.figshare.21899457
title: Supplemental File 10

description: Supplemental File 10. Concensus DMC methylation results between methylKit and methylSig.
DOI: 10.5281/zenodo.7860275
title: Test Data set

description: Test data set for flow field
DOI: 10.5281/zenodo.7860274
title: Test Data set

description: Test data set for flow field
DOI: 10.6084/m9.figshare.21899460
title: Supplemental File 11

description: Supplemental File 11. Overlap of DEGs and DMCs across timepoints and comparisons.
DOI: 10.6084/m9.figshare.21899466
title: Supplemental File 12

description: Supplemental File 12. Pathway analyses of DEG and DMC overlap.
DOI: 10.6084/m9.figshare.21899466.v1
title: Supplemental File 12

description: Supplemental File 12. Pathway analyses of DEG and DMC overlap.
DOI: 10.6084/m9.figshare.22581958.v1
title: Supplemental Table 2

description: Table S2. Individual mouse body mass and muscle masses.
DOI: 10.5281/zenodo.7860213
title: Data produced in the context of RCLN particpation to the Visual WSD task at SemEval 2023

description: The data contain: - generated captions from train, trial and test images - generated images from the diffusion model refer to https://github.com/dbuscaldi/VisualWSD23 for code
DOI: 10.5281/zenodo.7860212
title: Data produced in the context of RCLN particpation to the Visual WSD task at SemEval 2023

description: The data contain: - generated captions from train, trial and test images - generated images from the diffusion model refer to https://github.com/dbuscaldi/VisualWSD23 for code
DOI: 10.5281/zenodo.7860266
title: MICCAI FLARE22 Challenge Dataset (50 Labeled Abdomen CT Scans)

description: This dataset was used as the labeled training set in MICCAI FLARE 2022 Challenge https://flare22.grand-challenge.org/. The CT images and pancreas annotations are from http://medicaldecathlon.com/ The other organ annotations are from AbdomenCT-1K (research purpose only). If this dataset is useful in your research, please give credit to the following two papers: A large annotated medical image dataset for the development and evaluation of segmentation algorithms https://arxiv.org/abs/1902.09063 AbdomenCT-1K: Is Abdominal Organ Segmentation a Solved Problem? https://ieeexplore.ieee.org/document/9497733
DOI: 10.5281/zenodo.7860267
title: MICCAI FLARE22 Challenge Dataset (50 Labeled Abdomen CT Scans)

description: This dataset was used as the labeled training set in MICCAI FLARE 2022 Challenge https://flare22.grand-challenge.org/. The CT images and pancreas annotations are from http://medicaldecathlon.com/ The other organ annotations are from AbdomenCT-1K (research purpose only). If this dataset is useful in your research, please give credit to the following two papers: A large annotated medical image dataset for the development and evaluation of segmentation algorithms https://arxiv.org/abs/1902.09063 AbdomenCT-1K: Is Abdominal Organ Segmentation a Solved Problem? https://ieeexplore.ieee.org/document/9497733
DOI: 10.6084/m9.figshare.22687657
title: GB_6

description: Classified map sample of site GB6
DOI: 10.6084/m9.figshare.22687657.v1
title: GB_6

description: Classified map sample of site GB6
DOI: 10.35077/act-the
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 886539074

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 886539074', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H19.06.356', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'62', Ageunit:'years', Sex:'Male', Genotype:'culture, enhancer AAV', OrganName:'Brain', SampleLocalID:'886539074', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24494', Locations:'TemL' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.5281/zenodo.7738762
title: Insect Odorant Binding Protein Dataset of Binding Affinities against Volatile Organic Compounds

description: This is an archival version of the initial iOBPdb dataset of insect odorant binding protein binding affinities against volatile organic compounds. It contains 181 functional studies containing 382 unique OBPs from 91 insect species for 622 individual VOC targets.
DOI: 10.5281/zenodo.7738763
title: Insect Odorant Binding Protein Dataset of Binding Affinities against Volatile Organic Compounds

description: This is an archival version of the initial iOBPdb dataset of insect odorant binding protein binding affinities against volatile organic compounds. It contains 215 functional studies containing 382 unique OBPs from 91 insect species.
DOI: 10.5281/zenodo.7860280
title: Insect Odorant Binding Protein Dataset of Binding Affinities against Volatile Organic Compounds

description: This is an archival version of the initial iOBPdb dataset of insect odorant binding protein binding affinities against volatile organic compounds. It contains 181 functional studies containing 382 unique OBPs from 91 insect species for 622 individual VOC targets.
DOI: 10.6084/m9.figshare.16606215
title: Foaming behavior of sugar-based surfactants: influence of molecular structure and anticipation from surface properties

description: Sugar-based surfactants are a class of environmentally-friendly surface-active molecules well known for their functional performances, good biodegradability and reduced ecological footprint. Many previous studies have explored the surface properties of these surfactants. However, very little research has investigated their foaming properties. The present study examines the foaming behavior of 17 nonionic sugar-based surfactants with gradual structure variation. Foaming properties such as foamability, foam stability and maximum foam density were measured using the gas-sparging method. The influence of surfactant structure and concentration on foaming properties was evaluated. The data on surface adsorption properties, determined in the previous study, and foaming properties were then analyzed using a Principal Component Analysis. It was shown that the foaming behavior of glycolipids can be correlated to concentration and interfacial properties. Predictive models are proposed to anticipate the foaming behavior and provide a useful guide for screening the foamability of bio-based surfactants in various technological applications.
DOI: 10.6084/m9.figshare.16606215.v1
title: Foaming behavior of sugar-based surfactants: influence of molecular structure and anticipation from surface properties

description: Sugar-based surfactants are a class of environmentally-friendly surface-active molecules well known for their functional performances, good biodegradability and reduced ecological footprint. Many previous studies have explored the surface properties of these surfactants. However, very little research has investigated their foaming properties. The present study examines the foaming behavior of 17 nonionic sugar-based surfactants with gradual structure variation. Foaming properties such as foamability, foam stability and maximum foam density were measured using the gas-sparging method. The influence of surfactant structure and concentration on foaming properties was evaluated. The data on surface adsorption properties, determined in the previous study, and foaming properties were then analyzed using a Principal Component Analysis. It was shown that the foaming behavior of glycolipids can be correlated to concentration and interfacial properties. Predictive models are proposed to anticipate the foaming behavior and provide a useful guide for screening the foamability of bio-based surfactants in various technological applications.
DOI: 10.5281/zenodo.7686073
title: A lack of population structure characterizes the invasive Lonicera japonica in West Virginia and across eastern North America

description: Figure S1. Mig-seq primers used in the current study. Dataset S1. SNP data in .vcf format for Lonicera japonica. Figure S2: STRUCTURE analyses. Left: Delta K plot showing the optional number of ancestral population clusters (based on Evanno et al. 2015 method). Right: Ancestry plots from analysis with ParallelStructure for k = 3 (above) and k = 5 (below). Colors correspond to each ancestral cluster.
DOI: 10.5281/zenodo.7686074
title: A lack of population structure characterizes the invasive Lonicera japonica in West Virginia and across eastern North America

description: Figure S1. Mig-seq primers used in the current study. Dataset S1. SNP data in .vcf format for Lonicera japonica.
DOI: 10.5281/zenodo.7860288
title: A lack of population structure characterizes the invasive Lonicera japonica in West Virginia and across eastern North America

description: Figure S1. Mig-seq primers used in the current study. Dataset S1. SNP data in .vcf format for Lonicera japonica. Figure S2: STRUCTURE analyses. Left: Delta K plot showing the optional number of ancestral population clusters (based on Evanno et al. 2015 method). Right: Ancestry plots from analysis with ParallelStructure for k = 3 (above) and k = 5 (below). Colors correspond to each ancestral cluster.
DOI: 10.5517/ccdc.csd.cc227ppq
title: CCDC 1914023: Experimental Crystal Structure Determination

description: Related Article: Han‐Han Kong, Long Zhao, Hong‐Ling Pan, Ming‐Wu Ding|2023|Eur.J.Org.Chem.|26|e202300127|doi:10.1002/ejoc.202300127
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d5491
title: CCDC 2209472: Experimental Crystal Structure Determination

description: Related Article: Juliane Schoening, Christoph Wölper, Stephan Schulz|2023|Eur.J.Inorg.Chem.|26|e202200638|doi:10.1002/ejic.202200638
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c83d5
title: CCDC 2182536: Experimental Crystal Structure Determination

description: Related Article: PeiPei Zhou, Zitong Song, Xia Zhou, Zhuoyi Cheng, Xue Wang, DongMei Wang|2023|Inorg.Chem.|62|5931|doi:10.1021/acs.inorgchem.2c04158
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.35077/act-tie
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 886544038

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 886544038', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H19.06.356', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'62', Ageunit:'years', Sex:'Male', Genotype:'culture, enhancer AAV', OrganName:'Brain', SampleLocalID:'886544038', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24495', Locations:'TemL' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.34740/kaggle/dsv/5511493
title: Balochi Language to English Translation Dataset
DOI: 10.6084/m9.figshare.15152256
title: GIS Data & Maps

description: Data for maps and figures in "Global Potential for Harvesting Drinking Water from Air using Solar Energy" in Nature.
DOI: 10.6084/m9.figshare.15152256.v1
title: GIS Data & Maps

description: Data for maps and figures in "Global Potential for Harvesting Drinking Water from Air using Solar Energy" in Nature.
DOI: 10.35077/act-tin
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 886547084

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 886547084', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H19.06.356', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'62', Ageunit:'years', Sex:'Male', Genotype:'culture, enhancer AAV', OrganName:'Brain', SampleLocalID:'886547084', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24478', Locations:'TemL' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'