cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zwrzb7
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Pelargonium graveolens (Thunb.) L'Hér."
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086120-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e208281
title: ECIN Replication Package for "How Do Firms Respond to State Retirement Plan Mandates?"

description: We investigate how state “Auto-IRA” mandates affect firm offerings of employer-sponsored retirement plans (ESRPs). These policies require firms without ESRPs to facilitate automatic employee contributions to state-created individual retirement accounts (IRAs). We find that these policies increase an individual’s probability of working for a firm with an ESRP by 6-9 percent and of being included in the ESRP by 8-13 percent. At the firm level, these policies increase the probability of offering an ESRP by 7 percent, the probability of establishing a new ESRP by 41-44 percent, and the number of ESRP participants by 6 percent.
DOI: 10.3886/e208281v3
title: ECIN Replication Package for "How Do Firms Respond to State Retirement Plan Mandates?"

description: We investigate how state “Auto-IRA” mandates affect firm offerings of employer-sponsored retirement plans (ESRPs). These policies require firms without ESRPs to facilitate automatic employee contributions to state-created individual retirement accounts (IRAs). We find that these policies increase an individual’s probability of working for a firm with an ESRP by 6-9 percent and of being included in the ESRP by 8-13 percent. At the firm level, these policies increase the probability of offering an ESRP by 7 percent, the probability of establishing a new ESRP by 41-44 percent, and the number of ESRP participants by 6 percent.
DOI: 10.15468/dl.ckkdyt
title: Occurrence Download

description: A dataset containing 465174267 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tracheophyta"
 ]
}

 The dataset includes 465174267 records from 14632 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085850-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/730w-hd87
title: Electronic Nose signal

description: Perceptualattributes or descriptors are used to describe odor impressions,with odor perception levels ranging from 0 to 100. We used 44single-molecule substances to predict 9 olfactory perceptionsof pleasantness, namely, sweet, fruit, fish, garlic, grass, burnt,musky aroma and decayed.
DOI: 10.21227/8emz-de94
title: Electronic Nose signal

description: Perceptualattributes or descriptors are used to describe odor impressions,with odor perception levels ranging from 0 to 100. We used 44single-molecule substances to predict 9 olfactory perceptionsof pleasantness, namely, sweet, fruit, fish, garlic, grass, burnt,musky aroma and decayed.
DOI: 10.6073/pasta/16cf0739e6db87e91f15c0aed9442482
title: PPL01 Konza Prairie Long-Term Phosphorus Plots Experiment

description: Increased nutrient inputs is one of many global change factors predicted to affect the composition and ecosystem function of plant communities. In general, nitrogen deposition decreases diversity and increases productivity. The effects of phosphorus addition have received less attention, however, and the interactive effect of both nutrients is likely to exacerbate diversity loss over time. Here we addressed whether chronic nutrient additions changed community structure and ecosystem productivity of a native tallgrass prairie. This study took place in an ungrazed watershed that is burned every two years. Two N treatments, 0 and 10 g m-2, and four P treatments, 0, 2.5, 5 and 10 g m-2 were crossed in a fully factorial experimental design. The experiment was initiated in 2002 and starting in 2003 nutrients were added at the beginning of each growing season. Plant species composition was surveyed both in the spring and late summer each year, and aboveground biomass was harvested at the end of each summer to estimate aboveground net primary productivity (ANPP).
DOI: 10.25934/00005240
title: Sequential Expansion of Comparative Effectiveness of Oral Anticoagulants: A Cohort Study

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5281/zenodo.3662894
title: An evaluation of the accuracy and speed of metagenome analysis tools

description: Metagenome studies are becoming increasingly widespread, yielding important insights into microbial communities covering diverse environments from terrestrial and aquatic ecosystems to human skin and gut. With the advent of high-throughput sequencing platforms, the use of large scale shotgun sequencing approaches is now commonplace. However, a thorough independent benchmark comparing state-of-the-art metagenome analysis tools is lacking. Here, we present a benchmark where the most widely used tools are tested on complex, realistic data sets. Our results clearly show that the most widely used tools are not necessarily the most accurate, that the most accurate tool is not necessarily the most time consuming and that there is a high degree of variability between available tools. These findings are important as the conclusions of any metagenomics study are affected by errors in the predicted community composition and functional capacity.
description: {"references": ["Lindgreen et al. 2016, An evaluation of the accuracy and speed of metagenome analysis tools"]}
DOI: 10.5281/zenodo.3662895
title: An evaluation of the accuracy and speed of metagenome analysis tools

description: Metagenome studies are becoming increasingly widespread, yielding important insights into microbial communities covering diverse environments from terrestrial and aquatic ecosystems to human skin and gut. With the advent of high-throughput sequencing platforms, the use of large scale shotgun sequencing approaches is now commonplace. However, a thorough independent benchmark comparing state-of-the-art metagenome analysis tools is lacking. Here, we present a benchmark where the most widely used tools are tested on complex, realistic data sets. Our results clearly show that the most widely used tools are not necessarily the most accurate, that the most accurate tool is not necessarily the most time consuming and that there is a high degree of variability between available tools. These findings are important as the conclusions of any metagenomics study are affected by errors in the predicted community composition and functional capacity.
description: {"references": ["Lindgreen et al. 2016, An evaluation of the accuracy and speed of metagenome analysis tools"]}
DOI: 10.15468/feargs
title: Ceropsylla pouteriae Burckhardt sp. nov. (Hemiptera: Psylloidea: Triozidae) ı a new species of jumping plant-louse inducing galls on the leaves of Pouteria ramiflora (Mart.) Radlk. (Sapotaceae): taxonomyı gall structure and histochemistry

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kuster, Denis Coelho De Oliveira ı Daniel Burckhardt ı Tácito De Freitas Calácio ı Vinícius Coelho, Queiroz, Dalva Luiz de (2019): Ceropsylla pouteriae Burckhardt sp. nov. (Hemiptera: Psylloidea: Triozidae) ı a new species of jumping plant-louse inducing galls on the leaves of Pouteria ramiflora (Mart.) Radlk. (Sapotaceae): taxonomyı gall structure and histochemistry. JOURNAL OF NATURAL HISTORY 53 (31): 1923-1950, DOI: 10.1080/00222933.2019.1676931
DOI: 10.5519/qd.4shjhs5t
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.15468/lfz255
title: Taxonomic contribution on the Andean species of Aegognathus (Coleoptera: Lucanidae) with two new species from Colombia and Peru

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ríos-Málaver, Juan Sebastián Dueñas Cáceres ı Cristóbal, Grossi, Paschoal Coelho (2019): Taxonomic contribution on the Andean species of Aegognathus (Coleoptera: Lucanidae) with two new species from Colombia and Peru. JOURNAL OF NATURAL HISTORY 53 (35): 2145-2164, DOI: 10.1080/00222933.2019.1692089
DOI: 10.6073/pasta/ee1b0056e741169a24c11afce777eb84
title: Carbon flux from aquatic ecosystems of the Arctic Coastal Plain along the Beaufort Sea, Alaska, 2010-2018

description: Multiple aquatic ecosystems (pond, lake, river, lagoon, ocean) on the Arctic Coastal Plain (ACP) near Utqiaġvik, AK were visited to determine their relative contribution to landscape-level atmospheric CO2 flux and how this may have changed over time. pCO2 (partial pressure of carbon dioxide) was monitored in late summer (late July to mid-August) over a period of four years (2013, 2015, 2017, 2018) from open water areas and is related to habitat type, dissolved organic carbon (DOC) and environmental factors (temperature, radiation, rainfall). Data include both daily averages from most sites, as well as spatial representation of pCO2 in Elson Lagoon and diel cycles of pCO2 from a tundra pond. Pond NEP (net ecosystem production) is estimated by free water metabolism and presented as daily estimates over a four summer period.
DOI: 10.5281/zenodo.3663048
title: Gradients 2 underway data

description: Underway towfish dissolved trace metals from the Gradients 2 cruise.
DOI: 10.5281/zenodo.3663049
title: Gradients 2 underway data

description: Underway towfish dissolved trace metals from the Gradients 2 cruise.
DOI: 10.25345/c56d75
title: MassIVE MSV000084944 - Mouse_Heart_Chronic_Chagas_ddMS2_Positive
title: positive polarity ddMS2 heart slice tissue samples collected on a Vanquish UHPLC coupled with Q Exactive Plus using C8 column in a 7.5 minute gradient.
DOI: 10.25919/5e433385da843
title: Parkes observations for project P958 semester 2019OCTS_49

description: Fast radio bursts (FRBs) continue to raise more questions than they answer. Until last year, only one burst – the only one known to repeat - had been localized to a bright radio nebula (either a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy. Over the last two year searches with the Australian Square Kilometre Array Pathfinder (ASKAP) have detected 31 bursts, five of which have been localised to host galaxies at redshifts ranging from 0.1 to 0.5. These bursts and their hosts are very unlike the repeater, suggesting there may be a dichotomy in the population. However one of the arcminute-localised ASKAP FRBs has recently been found to repeat. Here we propose to search and study repetitions in this FRB population. Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections to characterise the fraction of bursts that repeat. For bursts that repeat the unique wide bandwidth observations will be used to test leading models of burst emission.
DOI: 10.7910/dvn/vxjo8p/miolno
title: metadata.txt

description: :unav
DOI: 10.7910/dvn/vxjo8p
title: An intensive multilocation temporal dataset of fungal communities in the root and rhizosphere of Brassica napus

description: This is a dataset of the diversity and temporal composition of fungal communities in the root endosphere and rhizosphere of diverse Brassica napus lines grown in different environments in the Canadian prairie. The dataset is used to demonstrate how the root and rhizosphere fungal communities of B. napus are shaped by plant genotype, temporal changes and environment, in order to adapt effective varieties for sustainable and stable crop production systems.
DOI: 10.7910/dvn/vxjo8p/kns9fw
title: asv.table.txt

description: :unav
DOI: 10.7910/dvn/vxjo8p/kwrspy
title: tax.table.txt

description: :unav
DOI: 10.18739/a21834298
title: Seasonal soil moisture measurements from a Mobile Instrumented System Platform (MISP) grid, Barrow, Alaska, 2016

description: Seasonal soil moisture measurements were collected during the 2016 growing season at each Mobile Instrumented System Platform (MISP) grid meter in Utqiaġvik (formerly Barrow), Alaska. At each meter one soil moisture measurement was acquired, the date, start and end times, and the people present were also recorded. Soil moisture measurements were taken on the north side of the grid in order to reduce disturbance of vegetation. These measurements are part of the Arctic Observing Network (AON) - International Tundra Experiment (ITEX) initiative and help to document seasonal changes in surface moisture and structure at high spatial scales.
DOI: 10.25345/c52m4v
title: MassIVE MSV000084945 - GNPS-Burkholderia_trimethoprim_LB
title: The Burkholderia cepacia complex is a group of closely related species with large genomes that infect immunocompromised individuals or those living with cystic fibrosis. Some of these species are found more frequently and cause more severe disease than others, yet metabolomic differences between these species have not been described. Furthermore, our understanding of how these species respond to antibiotics is limited. We investigated the metabolomics differences between 10 Burkholderia strains including: B. cenocepacia J2315, B. cenocepacia K56-2, B. cenocepacia C5424, B. multivorans CF-1, B. multivorans CF-2, B. multivorans ATCC 17616, B. dolosa AU0645, B. dolosa AU1058, B. ambifaria H14274, and B. thailandensis E264 in the presence and absence of the antibiotic trimethoprim. Using a combination of supervised and unsupervised metabolomics data visualization and analysis tools, we describe the overall differences between strains of the same species and between species. Specifically, we report for the first time the role of the pyomelanin pathway in bacterial metabolism of trimethoprim using B. cenocepacia J2315 khmgA and K56-2 jhmgA strains with variants in the hmgA gene (which is responsible for pyomelanin production). We also report differences in detection of known secondary metabolites such as fragin, ornibactin, and N-acylhomoserine lactones and their analogs in closely related strains. Furthermore, we highlight the potential for the discovery of new secondary metabolites in clinical strains of Burkholderia spp. The metabolomics differences described in this study highlight the personalized nature of closely related Burkholderia strains.
DOI: 10.25345/c5xx1k
title: MassIVE MSV000084946 - GNPS - Penicillium #12 with Ecoli or P. psychrophila and unprocessed data
title: Penicillium solitum grown on cheese curd agar with either E. coli and Pseudomonas psychrophila and extracted with acn. Data files unprocessed and compared to processed files with blank removal algorithm called BLANKA.
DOI: 10.18112/openneuro.ds003043.v1.0.0
title: Dichoptic Magno/Parvo
DOI: 10.5281/zenodo.3663080
title: R-R HRV data from Biofeedback on 100 patients

description: Psychiatric patients with adverse childhood experiences (ACE) tend to be dysfunctional in the interoceptive part of their emotional experience. The integration of interoceptive emotional activity in the insular and cingulate cortices is linked to the regulation of sympathovagal balance. This makes heart rate variability (HRV) an ideal measure for providing feedback on emotion regulation in real time. A sample of one hundred (n=100) outpatients is included in this release. Most patient underwent 8 sessions. Se published article for more details.
DOI: 10.5519/qd.u62b39fr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (744268 records)
DOI: 10.15472/aalup3
title: Aves del departamento del Valle del Cauca, Colombia, Suramérica.

description: La avifauna del departamento del Valle del Cauca ha sido uno de los grupos biológicos mejor estudiados en Colombia desde finales de 1800. Producto de estos ejercicios de compilación de información, los estimados de la riqueza de especies varían ampliamente, entre 818 y 1025 especies. Este trabajo pretende contribuir al conocimiento ornitológico del departamento, resaltar los vacíos de información existente y servir de guía para dirigir esfuerzos de investigación y conservación para la avifauna en el departamento. Recopilamos información de registros de aves de diferentes fuentes y obtuvimos un listado de 989 especies de aves confirmadas para el departamento y 13 especies que fueron catalogadas como potencialmente presentes. Encontramos registros de ocho especies introducidas que no tienen registros publicados o son anecdóticos en Colombia. Futuras expediciones o investigaciones deberían enfocarse en llenar los vacíos de información de aves que se concentran en el cañón del río Garrapatas, al sur de Buenaventura y en la cordillera Central.
DOI: 10.6084/m9.figshare.11835804.v4
title: Simulated spectrum peak wave period (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated spectrum peak wave period (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.5281/zenodo.3662846
title: Data Supporting GoodVibes: Automating and applying thermodynamic corrections to harmonic frequency calculations

description: These files are provided in support of the use case in a recent manuscript showing the use of the Python package GoodVibes. This data set contains Gaussian optimization and frequency calculations on 25 molecules, along with 25 corresponding ORCA single point energy calculations, a YAML file to dictate and format the reaction pathway, and example outputs of the tabulated thermochemistry and a PNG of the potential energy surface graph output.<br> To generate these output files, the command: <pre><code class="language-bash">python -m goodvibes *.log --spc DLPNO --pes PhPy.yaml --graph PhPy.yaml -t 353.15 --imag --invertifreq -5 --media ethanol </code></pre> was run in the directory containing the calculation output (.log and .out) files.
DOI: 10.5281/zenodo.3662845
title: Data Supporting GoodVibes: automated thermochemistry for heterogeneous computational chemistry data

description: These files are provided in support of the use case in a recent manuscript showing the use of the Python package GoodVibes. This data set contains Gaussian optimization and frequency calculations on 25 molecules, along with 25 corresponding ORCA single point energy calculations, a YAML file to dictate and format the reaction pathway, and example outputs of the tabulated thermochemistry and a PNG of the potential energy surface graph output.<br> To generate these output files, the command: <pre><code class="language-bash">python -m goodvibes *.log --spc DLPNO --pes PhPy.yaml --graph PhPy.yaml -t 353.15 --imag --invertifreq -5 --media ethanol -c 1 </code></pre> was run in the directory containing the calculation output (.log and .out) files.
DOI: 10.6085/aa/cblx00_xxxitv2xlsr01_20190321.40.1
title: (:unkn)
DOI: 10.3886/e117648v1
title: ABCs of the ABDC

description: Many institutions and governments grade academic journals for the evaluation of research. In this paper we implement a multi-bibliometric methodology for the evaluation of such a list of journal grades. We examine the grades assigned by the Australian Business Deans Council (ABDC) for over 750 journals in the fields of economics and statistics. First, we generate up to 48 bibliometric based grades for each journal based on the grade distribution implied by the ABDC. Second, we categorise the bibliometrics employing a cluster analysis of an interrater agreement statistic. Third, we present a visualisation of the consistency of the grading by journal. Finally, we list those journals where the majority of the matched bibliometrics indicate a higher or lower grade than their ABDC grade. <br>The data available here are the results of the grades applied to the matched journals based on up to 48 bibliometric measures for each journal.
description: other~~
DOI: 10.3886/e117648
title: ABCs of the ABDC

description: Many institutions and governments grade academic journals for the evaluation of research. In this paper we implement a multi-bibliometric methodology for the evaluation of such a list of journal grades. We examine the grades assigned by the Australian Business Deans Council (ABDC) for over 750 journals in the fields of economics and statistics. First, we generate up to 48 bibliometric based grades for each journal based on the grade distribution implied by the ABDC. Second, we categorise the bibliometrics employing a cluster analysis of an interrater agreement statistic. Third, we present a visualisation of the consistency of the grading by journal. Finally, we list those journals where the majority of the matched bibliometrics indicate a higher or lower grade than their ABDC grade. <br>The data available here are the results of the grades applied to the matched journals based on up to 48 bibliometric measures for each journal.
description: other~~
DOI: 10.6084/m9.figshare.11835804.v5
title: Simulated spectrum peak wave period (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated spectrum peak wave period (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.7910/dvn/vuye2m/fexwlo
title: HH_JT_desc_public.do

description: :unav
DOI: 10.5519/qd.11ok33h2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1592623 records)
DOI: 10.7910/dvn/vhmfhk/azzf75
title: FS_adlisting_public.tab

description: :unav
DOI: 10.7910/dvn/vhmfhk/en87oq
title: FS_survey_public.tab

description: :unav
DOI: 10.7910/dvn/vhmfhk/nfdqi5
title: FS_descriptives_public.do

description: :unav
DOI: 10.6084/m9.figshare.11835804.v6
title: Simulated spectrum peak wave period (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated spectrum peak wave period (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.5519/qd.g62b4zuj
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1592623 records)
DOI: 10.25959/5e4372ceda3b7
title: HECTOR input, output and control files for Antarctic Surface Mass Balance (RACMO2.3p2 and ice core composites)
DOI: 10.5519/qd.dis47rsu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)