cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/w3h-75q-5jd
title: †Neoflabellina leptodisca (Wedekind, 1940)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q3g-29g-sqx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/syh-03f-0hw
title: Parrelloides hyalinus (Hofker, 1951)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g0w-tys-jv3
title: Pseudobelus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pd3-tbc-caa
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3xs-h4k-04n
title: Planulina foveolata (Brady, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1qx-h4v-z7p
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zmf-lft-9ap
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ry1-tee-m9k
title: Pseudobelus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tn0-9dw-qfq
title: Operculina complanata (Defrance in Blainville, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0z8-j9l-fyf
title: Cribroelphidium albiumbilicatum (Weiss, 1954)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/82r-5sz-p21
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/20g-v0s-aq9
title: †Bdelloidina vincentownensis Hofker, 1955

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6vw-epk-h9b
title: †Karreriella danica (Franke, 1927)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dkj-pvp-l18
title: †Daviesina minuscula (Hofker, 1957)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b2f-ytk-eq3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m4w-zs9-jhc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.1594/pangaea.815938
title: (Table S4d) Major and trace element compositions of onshore Taupo Volcanic Zone tephras

description: All standard deviations = 2sd.
DOI: 10.1594/pangaea.908571
title: (Figure 2) Un-adjusted LA-ICP-MS 4-cm multi-element runs on ice core KCC from Colle Gnifetti

description: Dataset corresponds to Figure 2 in the final manuscript. This dataset is composed of un-adjusted LA-ICP-MS 4-cm multi-element runs in intensity (cps) by depth. Note: For more information on post-processing of LAICPMS Data - see supplementary material of Clifford et al. (2019) - ***this data was not post processed using this method***
DOI: 10.1594/pangaea.941416
title: Seawater carbonate chemistry and performance and oxidative status in a tolerant burrowing clam

description: Whereas low levels of thermal stress, irradiance, and dietary restriction can have beneficial effects for many taxa, stress acclimation remains understudied in marine invertebrates, despite being threatened by climate change stressors such as ocean acidification. To test for life-stage and stress-intensity dependence in eliciting enhanced tolerance under subsequent stress encounters, we initially conditioned pediveliger Pacific geoduck (Panopea generosa) larvae to (i) ambient and moderately elevated pCO2 (920 µatm and 2800 µatm, respectively) for 110 days, (ii) secondarily applied a 7-day exposure to ambient, moderate, and severely elevated pCO2 (750 µatm, 2800 µatm, and 4900 µatm, respectively), followed by 7 days in ambient conditions, and (iii) implemented a 7-day third exposure to ambient (970 µatm) and moderate pCO2 (3000 µatm). Initial conditioning to moderate pCO2 stress followed by second and third exposure to severe and moderate pCO2 stress increased respiration rate, organic biomass, and shell size suggesting a stress-intensity-dependent effect on energetics. Additionally, stress-acclimated clams had lower antioxidant capacity compared to clams under ambient conditions, supporting the hypothesis that stress over postlarval-to-juvenile development affects oxidative status later in life. Time series and stress intensity-specific approaches can reveal life-stages and magnitudes of exposure, respectively, that may elicit beneficial phenotypic variation.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-2-24. 'EH' and 'AH' represents the ambient pCO2 history ('AH') or moderately-elevated pCO2 history ('EH') during the acclimation period prior to the repeat exposures. Characters after the 'history (AH or EH) represent pCO2 levels during the second exposure (A = ambient, M = moderately-elevated, and S = severely-elevated) and the third exposure (A = ambient, M = moderately-elevated). For instance, a row as 'EHSA' means moderately-elevated pCO2 acclimation, second exposure to severely-elevated pCO2, and third exposure to ambient pCO2. If an exposure is not given then that measurement was taken before the treatment was relevant.
DOI: 10.1594/pangaea.941419
title: Seawater carbonate chemistry and suvival, growth, and biochemical constituents of Artemia franciscana

description: Ocean acidification is becoming a potential threat to marine animals. The present study investigated the effect of seawater acidification on Artemia franciscana. A. franciscana cysts were allowed to hatch at different pH levels of pH 8.2 (control), 7.8, and 6.8. After 48 h incubation, the hatching percentage was significantly reduced in acidified seawater compared to that in control. Further, the hatched Artemia nauplii from each pH treatment were transferred to freshly acidified seawater for chronic study for 15 days. At the end of the experiment, survival, growth, and biochemical constituents were significantly decreased in Artemia at pH 7.8 and 6.8 compared to that in control, which indicates the adverse effects of acidified seawater on Artemia. The antioxidants, lipid peroxidation, and metabolic enzymes were significantly elevated in A. franciscana exposed to acidified seawater compared to that in control, which shows oxidative and metabolic stress on A. franciscana under acidified environment.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-2-24.
DOI: 10.6084/m9.figshare.28862532
title: Additional file 3 of Genome identification of the LRR-RLK gene family in maize (Zea mays) and expression analysis in response to Fusarium verticillioides infection

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.28862532.v1
title: Additional file 3 of Genome identification of the LRR-RLK gene family in maize (Zea mays) and expression analysis in response to Fusarium verticillioides infection

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.28862535.v1
title: Additional file 4 of Genome identification of the LRR-RLK gene family in maize (Zea mays) and expression analysis in response to Fusarium verticillioides infection

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.28862538
title: Additional file 5 of Genome identification of the LRR-RLK gene family in maize (Zea mays) and expression analysis in response to Fusarium verticillioides infection

description: Supplementary Material 5
DOI: 10.1594/pangaea.863138
title: Effects of ocean acidification on the swimming ability, development and biochemical responses of sand smelt larvae

description: Ocean acidification, recognized as a major threat to marine ecosystems, has developed into one of the fastest growing fields of research in marine sciences. Several studies on fish larval stages point to abnormal behaviours, malformations and increased mortality rates as a result of exposure to increased levels of CO2. However, other studies fail to recognize any consequence, suggesting species-specific sensitivity to increased levels of CO2, highlighting the need of further research. In this study we investigated the effects of exposure to elevated pCO2 on behaviour, development, oxidative stress and energy metabolism of sand smelt larvae, Atherina presbyter. Larvae were caught at Arrábida Marine Park (Portugal) and exposed to different pCO2 levels (control: 600 µatm, pH = 8.03; medium: 1000 µatm, pH = 7.85; high: 1800 µatm, pH = 7.64) up to 15 days, after which critical swimming speed (Ucrit), morphometric traits and biochemical biomarkers were determined. Measured biomarkers were related with: 1) oxidative stress-superoxide dismutase and catalase enzyme activities, levels of lipid peroxidation and DNA damage, and levels of superoxide anion production; 2) energy metabolism - total carbohydrate levels, electron transport system activity, lactate dehydrogenase and isocitrate dehydrogenase enzyme activities. Swimming speed was not affected by treatment, but exposure to increasing levels of pCO2 leads to higher energetic costs and morphometric changes, with larger larvae in high pCO2 treatment and smaller larvae in medium pCO2 treatment. The efficient antioxidant response capacity and increase in energetic metabolism only registered at the medium pCO2 treatment may indicate that at higher pCO2 levels the capacity of larvae to restore their internal balance can be impaired. Our findings illustrate the need of using multiple approaches to explore the consequences of future pCO2 levels on organisms.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-07-19.
description: Supplement to: Silva, Cátia S E; Novais, Sara C; Lemos, Marco F L; Mendes, Susana; Oliveira, A P; Gonçalves, Emanuel J; Faria, Ana M (2016): Effects of ocean acidification on the swimming ability, development and biochemical responses of sand smelt larvae. Science of the Total Environment, 563-564, 89-98
DOI: 10.6084/m9.figshare.28862535
title: Additional file 4 of Genome identification of the LRR-RLK gene family in maize (Zea mays) and expression analysis in response to Fusarium verticillioides infection

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.28862538.v1
title: Additional file 5 of Genome identification of the LRR-RLK gene family in maize (Zea mays) and expression analysis in response to Fusarium verticillioides infection

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.28862541
title: Additional file 6 of Genome identification of the LRR-RLK gene family in maize (Zea mays) and expression analysis in response to Fusarium verticillioides infection

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.28862541.v1
title: Additional file 6 of Genome identification of the LRR-RLK gene family in maize (Zea mays) and expression analysis in response to Fusarium verticillioides infection

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.28862547
title: Additional file 7 of Genome identification of the LRR-RLK gene family in maize (Zea mays) and expression analysis in response to Fusarium verticillioides infection

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.28862547.v1
title: Additional file 7 of Genome identification of the LRR-RLK gene family in maize (Zea mays) and expression analysis in response to Fusarium verticillioides infection

description: Supplementary Material 7
DOI: 10.1594/pangaea.939299
title: Yearly averaged Ba/Ca and Mg/Ca LA-ICP-MS data from the forereef (FR-12) and backreef (BR-06) corals (Table S2)
DOI: 10.1594/pangaea.951101
title: Detrital rutile trace element from the late Neogene Baode Red Clay sequence, Chinese Loess Plateau, and detrital rutile geochemistry from 14 potential source areas

description: The data consist of detrital rutile trace element geochemistry of the 6.91–2.64 Ma Baode Red Clay (three samples from the Miocene Baode Formation, five samples from the Pliocene Jingle Formation, and one sample from the Transitional Unit) and 14 potential sedimentary source areas in Central-East Asia. The data were collected using Nu Plasma AttoM single collector ICP-MS (Nu Instruments Ltd., Wrexham, UK) connected to an Analyte Excite 193 ArF laser ablation system (Photon Machines, San Diego, USA) at the Geological Survey of Finland. The rutiles were analysed for Li, Mg, Al, Si, P, Ca, Sc, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Rb, Sr, Y, Zr, Nb, Mo, Sn, Sb, Ba, La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, Yb, Lu, Hf, Ta, W, Pb, Th, and U. The grain size fractions of the analysed grains were mostly 30–90 μm for the Red Clay zircons and rutiles, and 20–500 μm for the potential source area rutiles.
DOI: 10.1594/pangaea.815933
title: (Table S4c) Major and trace element compositions of ODP Hole 181-1123C tephras

description: All standard deviations = 2sd.
DOI: 10.1594/pangaea.904645
title: (Table A3) Rutile trace element analyses in the Barrovian metamorphic sequence

description: Internal Standard TiO2=98 wt%
DOI: 10.1594/pangaea.951044
title: Detrital zircon U-Pb age from the late Neogene Baode Red Clay sequence, Chinese Loess Plateau

description: The data consist of detrital zircon U-Pb ages of the 4.04–2.64 Ma Baode Red Clay (four samples from the Pliocene Jingle Formation and one sample from the 2.64 Ma Transitional Unit). The data were collected using Nu Plasma AttoM single collector ICP-MS (Nu Instruments Ltd., Wrexham, UK) connected to an Analyte Excite 193 ArF laser ablation system (Photon Machines, San Diego, USA) at the Geological Survey of Finland.
DOI: 10.1594/pangaea.967063
title: Raw trace element data obtained by LA-ICP-MS for analysed tephra across 751-763 CE from B19 and TUNU2013 ice cores (Greenland)

description: Raw Trace element data of analysed ice core samples from B19 [78.00°N/36.40°W] and TUNU2013 [78.04°N/33.88°W] ice cores (Greenland) across the period 751-763 CE. Trace element data was obtained by LA-ICP-MS at the University of St Andrews, UK using a beam diameter of 20µm, laser energy of 3.5 J cm-2 (4 Hz repetition rate), 30-s ablation time and 20-s background measurement.
DOI: 10.1594/pangaea.967066
title: Secondary standards for trace element analyses for the geochemical composition of analysed tephra between 751 and 763 CE from B19, TUNU2013, and RECAP (Greenland ice cores) and correlating proximal material from Iceland

description: Secondary Standards of Old Crow, Sheep Track, ML3B, NIST610, and T1G for Trace element glass analyses obtained across the period 751-763 CE. Analyses were obtained by LA-ICP-MS at the University of St Andrews, UK.
DOI: 10.1594/pangaea.966792
title: Cellular stress biomarkers result of the cold-water coral Dentomuricea aff. meteor during a land-based experiment testing the cumulative effect of Cu exposure and ocean acidification

description: We report the results of a land-based experiment testing the cumulative effects of copper (Cu) exposure and ocean acidification (OA). Corals were obtained as by-catch during experimental long-line fisheries campaigns on board R/V "Arquipélago" (ARQDAÇO monitoring program, University of the Azores) at Baixa de São Mateus at 185 m depth in April 2019. The experiment was undertaken at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores) where corals were exposed to four OA/Cu-contamination scenarios: (1) ambient pCO2/pH level as measured in situ conditions (385 μatm/ pH 8.09); (2) high pCO2/reduced pH (IPCC RCP8.5 scenario, 1000 μatm/ pH 7.73); (3) ambient pCO2/pH level and additional Cu concentration (60 µg/l); (4) high pCO2/reduced pH and additional Cu concentration (60 µg/l). The pH/pCO2 modification was achieved by bubbling seawater with either pure CO2 (to increase pCO2) or CO2 low air (to decrease pCO2). The copper concentration used in this experiment followed a trial simulating a polymetallic particles plume release during a potential deep-sea mining event. This sublethal concentration was found to be the highest copper concentration dissolved in seawater.Metabolic (CA and Hsp70), oxidative damage (SOD, MDA) and detoxification (GST) biomarkers were measured in 4 corals from each treatment at the end of the experiment, using a multiplate spectrophotometer reader.
description: Species: octocoral Dentomuricea aff. meteor1. Experimental treatmentsTreatments8.1 + [0]: ambient pH plus no copper addition8.1 + [60]: ambient pH plus Cu concentration of 60 μg/l7.7 + [0]: low pH plus no copper addition7.7 + [60]: low pH plus Cu concentration of 60 μg/lExperiment duration: 9 days
DOI: 10.1594/pangaea.967048
title: Mg/Ca and Mg/Ca-derived SST data of sediment core MD161-17

description: This dataset contains Mg/Ca and Mg/Ca-derived SST data of sediment core MD161-17 from the Bay of Bengal. For Mg/Ca analysis, 30-40 specimens (&gt;150 µm) of G. ruber (white) were used. The sample preparation followed Barker et al. (2003) with slight modifications. Mg/Ca ratios were measured using an Agilent Technologies 700 Series ICP-OES with a CETAX ASX-520 autosampler housed at the Faculty of Geosciences, University of Bremen. Mg/Ca values were then used to estimate SSTs using the equation Mg/Ca=0.449exp(0.09*T) (Anand et al., 2003).
DOI: 10.1594/pangaea.711094
title: (Table 3) Major and trace element contents in fresh precursor lava and average percent change of the elements between the precursor and altered samples from ODP Hole 193-1188F
DOI: 10.1594/pangaea.929195
title: Seawater carbonate chemistry and sperm motility of Tegillarca granosavia

description: Since the industrial revolution, massive amount of anthropogenic carbon dioxide (CO2) have been generated to elevate the atmospheric CO2 concentration. Some anthropogenic CO2 have been absorbed by the ocean to cause “ocean acidification” (OA). Although the negative impacts of OA on sperm motility are increasingly found in various marine invertebrate species, the cellular and molecular mechanisms for these effects are still poorly understood. This study investigated the effect of OA (pH7.8 and 7.4) on sperm motility and energy supplying pathway in blood clam Tegillarca granosa. The results showed that the sperm swimming speed reduced significantly in acidified seawater. Since the adenosine triphosphate (ATP) level of sperm is closely related to its motility, we analyzed the sperm ATP content and activities of key enzymes during ATP synthesis under different OA scenarios. OA treatments significantly reduced ATP content as well as activities of 6-phosphofructokinase and pyruvate kinase in the sperm of T. granosa. The sperm Ca2+-ATPase of various animals has been reported to regulate sperm motility. Therefore, we explored the Ca2+-ATPase activity of T. granosa sperm under OA treatment. The results found that Ca2+-ATPase activities in the sperm of T. granosa were significantly declined under OA scenarios. In conclusion, these results suggested that OA could constrain sperm motility through inhibiting ATP synthesis and disturbing intracellular Ca2+ regulation.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-03-15.
DOI: 10.1594/pangaea.969125
title: Seawater carbonate chemistry and biological indices and oxidative stress responses of marine crab Scylla serrata to the impact of ocean acidification and cadmium toxicity

description: In the current study, the effect of OA on the toxicity of cadmium (Cd) in the crab Scylla serrata was evaluated. Crab instars (0.07 cm length and 0.1 g weight) were subjected to pH 8.2, 7.8, 7.6, 7.4, 7.2, and 7.0 with and without 0.01 mg l−1 of Cd for 60 days.This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-19.
DOI: 10.6084/m9.figshare.28862516
title: Additional file 2 of Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28862516.v1
title: Additional file 2 of Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)

description: Supplementary Material 2.
DOI: 10.1594/pangaea.780566
title: (Table 2) Geochemistry of plagioclase of ODP Hole 183-1137A Unit 10 basalts
DOI: 10.1594/pangaea.958053
title: Ac-leaches of different fractions in North Atlantic marine sediments
DOI: 10.6084/m9.figshare.28862519
title: Additional file 3 of Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.28862519.v1
title: Additional file 3 of Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.28862522
title: Additional file 4 of Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.28862522.v1
title: Additional file 4 of Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.28862525
title: Additional file 5 of Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)

description: Supplementary Material 5.
DOI: 10.6084/m9.figshare.28862525.v1
title: Additional file 5 of Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)

description: Supplementary Material 5.
DOI: 10.6084/m9.figshare.28862528
title: Additional file 6 of Sex-specific differential gene expression during stolonization in the branching syllid Ramisyllis kingghidorahi (Annelida, Syllidae)

description: Supplementary Material 6.