cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.pztksz
title: Figure metadata and raw data from the publication "Probing the effects of geometric frustration in an organic quantum magnet via elastocaloric measurements under strain"

description: Figure metadata and raw data from the publication "Probing the effects of geometric frustration in an organic quantum magnet via elastocaloric measurements under strain"
DOI: 10.15468/dl.qzv9ap
title: Occurrence Download

description: A dataset containing 60138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "OccurrenceStatus is Present",
 "TaxonKey is Orchidaceae"
 ]
}

 The dataset includes 60138 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002120-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4nraj
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Laurus nobilis",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 132 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002145-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15860972
title: SAIGE-QTL: Single-nucleus Expression QTL Summary Statistics using Human Brain Cohort

description: https://github.com/RajLabMSSM/SingleBrain

Full associations and top association summary statistics for cis-eQTLs mapped in the human brain single-nucleus RNA seq cohort(Fujita et al.[PMID: 38514782]) using SAIGE-QTL[PMID: 38798318], as part of the "SingleBrain" project.

Sample size = 402 European ancestry donors.

Each file has the following naming convention:

{Cell type}_eqtl_{ASSOC}.tsv.gz

References

The following reference was used for mapping phenotypes:

1. GENCODE - GENCODE v38 comprehensive transcripts (https://www.gencodegenes.org/human/release_38.html)

Cell type

The following brain 7 major cell types were tested for genetic association:



Ast: astrocytes

End: endothelial cells

Ext: excitatory neurons

IN: inhibitory neurons

MG: microglia

OD: oligodendrocytes

OPC: oligodendrocyte progenitor cell


All phenotype matrices were scaled and centered and then quantile normalized.

Associations

Top associations (top_assoc.tsv.gz) list the SNP-feature pair with the lowest adjusted P-value (ACAT_P) for that feature.

Full associations (full_assoc.tsv.gz) list all tested SNP-feature pairs.

Data dictionary

The columns of the two association files only differ by the presence of the ACAT_P column in the top associations.

feature: the phenotype being tested

CHR: chromosome

POS: position (hg38)

MarkerID: the genetic variant being tested

Allele1: reference allele

Allele2: alternate allele

AC_Allele2: Alternate allele count

AF_Allele2: Alternate allele frequency in the sample

MissingRate: genotype missing rate

BETA: Effect size estimate (per allele effect)

SE: Standard error of beta

Tstat: T-statistic for the effect size

var: Variance of the score test statistic

p.value: P-value

p.value.NA: P-value computed using a normal approximation (Wald or score test), not SPA.

Is.SPA:  Whether the Saddlepoint Approximation (SPA) converged (TRUE/FALSE)

N: Sample size used in the test

p_bonf: P-value adjusted for the number of variants tested in that feature (Bonferroni)

p_FDR: P-value adjusted for the number of variants tested in that feature (FDR)

ACAT_P: Aggregated Cauchy Association Test (ACAT) p-value, which is a gene-level p-value combining multiple single-variant p-values for a given gene or region.
DOI: 10.5281/zenodo.15860973
title: SAIGE-QTL: Single-nucleus Expression QTL Summary Statistics using Human Brain Cohort

description: https://github.com/RajLabMSSM/SingleBrain

Full associations and top association summary statistics for cis-eQTLs mapped in the human brain single-nucleus RNA seq cohort(Fujita et al.[PMID: 38514782]) using SAIGE-QTL[PMID: 38798318], as part of the "SingleBrain" project.

Sample size = 402 European ancestry donors.

Each file has the following naming convention:

{Cell type}_eqtl_{ASSOC}.tsv.gz

References

The following reference was used for mapping phenotypes:

1. GENCODE - GENCODE v38 comprehensive transcripts (https://www.gencodegenes.org/human/release_38.html)

Cell type

The following brain 7 major cell types were tested for genetic association:



Ast: astrocytes

End: endothelial cells

Ext: excitatory neurons

IN: inhibitory neurons

MG: microglia

OD: oligodendrocytes

OPC: oligodendrocyte progenitor cell


All phenotype matrices were scaled and centered and then quantile normalized.

Associations

Top associations (top_assoc.tsv.gz) list the SNP-feature pair with the lowest adjusted P-value (ACAT_P) for that feature.

Full associations (full_assoc.tsv.gz) list all tested SNP-feature pairs.

Data dictionary

The columns of the two association files only differ by the presence of the ACAT_P column in the top associations.

feature: the phenotype being tested

CHR: chromosome

POS: position (hg38)

MarkerID: the genetic variant being tested

Allele1: reference allele

Allele2: alternate allele

AC_Allele2: Alternate allele count

AF_Allele2: Alternate allele frequency in the sample

MissingRate: genotype missing rate

BETA: Effect size estimate (per allele effect)

SE: Standard error of beta

Tstat: T-statistic for the effect size

var: Variance of the score test statistic

p.value: P-value

p.value.NA: P-value computed using a normal approximation (Wald or score test), not SPA.

Is.SPA:  Whether the Saddlepoint Approximation (SPA) converged (TRUE/FALSE)

N: Sample size used in the test

p_bonf: P-value adjusted for the number of variants tested in that feature (Bonferroni)

p_FDR: P-value adjusted for the number of variants tested in that feature (FDR)

ACAT_P: Aggregated Cauchy Association Test (ACAT) p-value, which is a gene-level p-value combining multiple single-variant p-values for a given gene or region.
DOI: 10.15468/dl.g8fvp8
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphorbia lathyris",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 62 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002148-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqjnam
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhododendron coriaceum"
 ]
}

 The dataset includes 109 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002147-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22011/strenda_db.hyq0ca
title: The molecular basis for acetylhistidine synthesis by HisAT/NAT16

description: Probable N-acetyltransferase 16, Q8N8M0, null
DOI: 10.22011/strenda_db.zt1udp
title: The molecular basis for acetylhistidine synthesis by HisAT/NAT16

description: Probable N-acetyltransferase 16, Q8N8M0, null
DOI: 10.5517/ccdc.csd.cc276r6f
title: CCDC 2062064: Experimental Crystal Structure Determination

description: Related Article: Degang Zhao, Tong Ni, Jun Shu, Xiuyang Wang, Shengbin Zhou, Kaiming Zhang, Bin Xu, Weidong Jiang|2025|J.Colloid Interface Sci.|699|138161|doi:10.1016/j.jcis.2025.138161
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.d4c4uj
title: Occurrence Download

description: A dataset containing 33802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oryza barthii, Oryza longistaminata, Sporobolus pyramidalis, Arthropteris orientalis, Cyperus papyrus, Limnocharis flava, Persicaria lanigera, Eugenia uniflora, Sida cordifolia, Acacia colei)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 33802 records from 649 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002149-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2l0sp3
title: CCDC 2384045: Experimental Crystal Structure Determination

description: Related Article: Runqing Liu, Yuntian Zhao, Jiming Huang, Shibo Guan, Senling Leng|2025|Polyhedron|279|117654|doi:10.1016/j.poly.2025.117654
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.dugddq
title: Occurrence Download

description: A dataset containing 477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Manihot esculenta",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 477 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002151-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.peqwzs
title: Occurrence Download

description: A dataset containing 35688 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Araucaria"
 ]
}

 The dataset includes 35688 records from 636 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002150-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7fnkx
title: Occurrence Download

description: A dataset containing 593809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Betula pubescens"
 ]
}

 The dataset includes 593809 records from 1356 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010566-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnc2ge
title: Occurrence Download

description: A dataset containing 1135363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Corylus avellana"
 ]
}

 The dataset includes 1135363 records from 3629 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010568-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64mumf
title: Occurrence Download

description: A dataset containing 668252 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ringing Data from the Bird Migration Research Station, University of Gdańsk"
 ]
}

 The dataset includes 668252 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006827-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ku5qp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxypoda luridipennis Sharp, 1888",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219618-220831081235567/datasets/export for details.
DOI: 10.15468/dl.gy2hyc
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craugastor yucatanensis (Lynch, 1965)"
 ]
}

 The dataset includes 165 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201462-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqndfu
title: Occurrence Download

description: A dataset containing 32394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CollectionCode is one of (NY, NYBG, SPF, ESA, CEN, RB, SPSC)",
 "OccurrenceStatus is Present",
 "TaxonKey is Mimosa L."
 ]
}

 The dataset includes 32394 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242614-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mre3w
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhopaloscelis maculatus Bates, 1877",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219626-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xp3sb
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microcarpaea minima (Retz.) Merr.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 41 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201452-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11541866
title: Australia ISVS Data

description: This data includes datasets for practitioners and students used to validate the Australian ISVS-21.
DOI: 10.5281/zenodo.11541867
title: Australia ISVS Data

description: This data includes datasets for practitioners and students used to validate the Australian ISVS-21.
DOI: 10.15468/dl.cwtajz
title: Occurrence Download

description: A dataset containing 5182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "TaxonKey is Nocomis biguttatus (Kirtland, 1840)"
 ]
}

 The dataset includes 5182 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242623-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tz2cwd
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaenorhinum minus (L.) Lange",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201456-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yd8b5r
title: Occurrence Download

description: A dataset containing 653 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Veronica orchidea Crantz"
 ]
}

 The dataset includes 653 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243298-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8f3k8j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Penstemon hartwegii Benth.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201464-220831081235567/datasets/export for details.
DOI: 10.15468/dl.mktnhq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nemadus japanus Coiffait & Uéno, 1955",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219619-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cx968f
title: Occurrence Download

description: A dataset containing 935 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Anguilla mossambica (Peters, 1852)"
 ]
}

 The dataset includes 935 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243300-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rm2m4y
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lagotis takedana Miyabe & Tatew.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201458-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zg6s75
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acrobasis obrutella Christoph, 1881",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 31 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219641-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3tm3zj
title: Occurrence Download

description: A dataset containing 15906 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-109.58344 23.10214,-108.753 23.10214,-108.753 23.85829,-109.58344 23.85829,-109.58344 23.10214))",
 "Year 2014-2022"
 ]
}

 The dataset includes 15906 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201465-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emekuc
title: Occurrence Download

description: A dataset containing 1686945137 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1686945137 records from 19279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001762-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ty3-zf5-tyb
title: Monodonta canalifera Lamarck, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/llc-q91-8v8
title: Caecum floridanum W. Stimpson, 1851

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/stc-687-w51
title: Stosicia annulata (Dunker, 1860)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dpv-a5e-awp
title: Astralium haematragum (Menke, 1829)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rmw-h1g-jxk
title: Sulcospira infracostata (Mousson, 1849)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bgj-h3q-gcc
title: Valvata O. F. Müller, 1773

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cxg-993-yr7
title: Echinolittorina miliaris (Quoy & Gaimard, 1833)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z0l-hcg-e89
title: Pomacea dolidoides (Reeve, 1856)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z3x-paj-jlw
title: Amphithalamus vallei Aguayo & Jaume, 1947

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zav-w1z-v7x
title: Bufonaria crumena (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b3y-0k8-dpr
title: Vermetidae Rafinesque, 1815

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sfg-ha5-zc6
title: Casmaria unicolor (Pallary, 1926)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1xt-eyy-krn
title: Priotrochus obscurus (W. Wood, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5yb-pkv-rcl
title: Monoplex aquatilis (Reeve, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v3l-hnr-992
title: Gyrineum natator (Röding, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3jk-4x3-rfm
title: Caecum auriculatum de Folin, 1868

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/txh-gh5-b82
title: Rhinoclavis vertagus (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kh9-ekm-bzt
title: Triphoridae J. E. Gray, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pjm-8r7-ta5
title: Alcadia J. E. Gray, 1840

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/88s-v6b-9j3
title: Tonna luteostoma (Küster, 1857)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7rt-h6e-xya
title: Polinices lacteus (Guilding, 1834)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8h8-98a-vje
title: Cosmotriphora melanura (C. B. Adams, 1850)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.