cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12613811
title: In vitro recordings_oxytocin

description: In vitro recordings in auditory cortical slices from naive virgins. Extracellular stimulation was locally applied during whole-cell current clamp recordings - spike probability for each stimulation was measured before/during/after oxytocin wash. Control group = ACSF (repetitive stimulation in the absence of oxytocin).<br>Raw data (.abf) associated with Extended Data Fig. 9 from Schiavo et al. (2020). <br>Accompanying excel sheet lists relevant file names and protocols.
DOI: 10.17632/t33tkw2cpw.1
title: Trends in bibliometric indexes of the main dermatology journals (2009-2019) - Supplementary Material

description: Supplementary Material of the article: Trends in bibliometric indexes of the main dermatology journals (2009-2019) - JAAD 2020 Supplementary figure 1. Trends in the Immediacy Index for the five highest-rated dermatology journals (2010–2019). Supplementary table 1. Main bibliometric indexes from the 20 highest-rated dermatology journals (JCR-2019).
DOI: 10.6084/m9.figshare.12613772
title: Dataset 1.All raw data for article ‘Prediction of recombinant Mycobacterium tuberculosis α-crystallin oligomer chaperone activity using polynomial graphs’.

description: Dataset 1.All raw data for article ‘Prediction of recombinant Mycobacterium tuberculosis α-crystallin oligomer chaperone activity using polynomial graphs’.
DOI: 10.6084/m9.figshare.12613772.v1
title: Dataset 1.All raw data for article ‘Prediction of recombinant Mycobacterium tuberculosis α-crystallin oligomer chaperone activity using polynomial graphs’.

description: Dataset 1.All raw data for article ‘Prediction of recombinant Mycobacterium tuberculosis α-crystallin oligomer chaperone activity using polynomial graphs’.
DOI: 10.6084/m9.figshare.12613775.v1
title: Metadata record for: A crop type dataset for consistent land cover classification in Central Asia

description: This dataset contains key characteristics about the data described in the Data Descriptor A crop type dataset for consistent land cover classification in Central Asia. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12613649
title: COVID-19 evolution in Cameroon

description: The proposed research includes daily data on the number of confirmed cases, the number of deaths, and the number of recovered from the COVID-19 pandemic going from March 6<sup>th,</sup> 2020 to April 10<sup>th</sup>, 2020. Our data have been collected from daily tweets of the public health minister, the daily report on the website of the ministry, and daily Facebook/twitter post of the main Cameroonian National media (Cameroon Radio Television, CRTV).
DOI: 10.17632/wdx2ntjznj.2
title: Data for: Spatial decomposition analysis of NO2 and PM2.5 air pollution in the United States

description: This dataset includes the yearly decomposed concentrations of four spatial components ("long-range", "mid-range", "neighborhood", "near-source") for PM2.5 and NO2, from year-2000 to year-2015. The concentrations are at the census block level. The unit of concentrations is ug/m3 for PM2.5 and ppb for NO2. Block is identified by variable "block_fip"; the longitude and latitude of each block centroid are indicated by "longitude" and "latitude". Names of concentration variables follow the pattern as "COMPONENT_YEAR". "COMPONENT" represents four spatial components; "YEAR" represents the last two digits of year-2000 to year-2015. For example, "long-range_00" represents the "long-range" component concentrations for the year-2000.
DOI: 10.6084/m9.figshare.12613578
title: Datasets from Exploring the attachment of the Mediterranean medicinal leech (<i>Hirudo verbana</i>) to porous substrates

description: Spreadsheet containing all datasets used within this study.
DOI: 10.17632/xtfzrbvcb2.2
title: Numerical results in Multilayer-HySEA model validation for landslide generated tsunamis. Part I Rigid slides

description: All the numerical results obtained with the Multilayer-HySEA model included in the paper by Macías, J., Escalante, C., Castro, M.J. (2020), "Multilayer-HySEA model validation for landslide generated tsunamis. Part I Rigid slides". Submitted to NHESS. https://doi.org/10.5194/nhess-2020-171 are the content of the present data set.
DOI: 10.6084/m9.figshare.12613578.v2
title: Datasets from Exploring the attachment of the Mediterranean medicinal leech (<i>Hirudo verbana</i>) to porous substrates

description: Spreadsheet containing all datasets used within this study.
DOI: 10.6084/m9.figshare.12613578.v1
title: Datasets from Exploring the attachment of the Mediterranean medicinal leech (<i>Hirudo verbana</i>) to porous substrates

description: Spreadsheet containing all datasets used within this study.
DOI: 10.6084/m9.figshare.12613549
title: DB Lutzomyias: from Complex ecological interactions across a focus of cutaneous leishmaniasis in Eastern Colombia: novel description of <i>Leishmania</i> species, hosts and phlebotomine fauna

description: Complete database used for the different analyzes in this study
DOI: 10.6084/m9.figshare.12613549.v1
title: DB Lutzomyias: from Complex ecological interactions across a focus of cutaneous leishmaniasis in Eastern Colombia: novel description of <i>Leishmania</i> species, hosts and phlebotomine fauna

description: Complete database used for the different analyzes in this study
DOI: 10.6084/m9.figshare.12613542
title: Data published in this paper from Science-based approach to using growth rate to assess coral performance and restoration outcomes

description: This file contains all raw data in support of this paper.
DOI: 10.17632/r9rrjgp6dv.2
title: Original Data

description: The data of antioxidant activities and hypolipemic and hypoglycemic effects for the essential oil of Docynia delavayi
DOI: 10.6084/m9.figshare.12613520
title: Raw data for "Dynamics of calcium, magnesium, and manganese during litter decomposition in alpine forest aquatic and terrestrial ecosystem" published in Ecosystems

description: The primary data and R code (for primary component analyses) used in this research. Any use of these data should be contact the first author Kai Yue at kyleyuechina@163.com<br>
DOI: 10.6084/m9.figshare.12613542.v2
title: Data published in this paper from Science-based approach to using growth rate to assess coral performance and restoration outcomes

description: This file contains all raw data in support of this paper.
DOI: 10.6084/m9.figshare.12613542.v1
title: Data published in this paper from Science-based approach to using growth rate to assess coral performance and restoration outcomes

description: This file contains all raw data in support of this paper.
DOI: 10.17632/r9rrjgp6dv.1
title: Original Data

description: The data of antioxidant activities and hypolipemic and hypoglycemic effects for the essential oil of Docynia delavayi
DOI: 10.6084/m9.figshare.12613520.v2
title: Raw data for "Dynamics of calcium, magnesium, and manganese during litter decomposition in alpine forest aquatic and terrestrial ecosystem" published in Ecosystems

description: The primary data and R code (for primary component analyses) used in this research. Any use of these data should be contact the first author Kai Yue at kyleyuechina@163.com<br>
DOI: 10.6084/m9.figshare.12613421
title: Mindfulness and Equanimity Moderate Approach/Avoidance Motor-Responses

description: date from <b>Mindfulness and Equanimity Moderate Approach/Avoidance Motor-Responses</b>
DOI: 10.6084/m9.figshare.12613409
title: Study1

description: Data from <b>Mindfulness and Equanimity Moderate Approach/Avoidance Motor-Responses</b>
DOI: 10.6084/m9.figshare.12613520.v1
title: Raw data for "Dynamics of calcium, magnesium, and manganese during litter decomposition in alpine forest aquatic and terrestrial ecosystem" published in Ecosystems

description: The primary data and R code (for primary component analyses) used in this research. Any use of these data should be contact the first author Kai Yue at kyleyuechina@163.com<br>
DOI: 10.6084/m9.figshare.12613397
title: Agile Coaching Data Extraction

description: Dataset used for agile coaching paper
DOI: 10.6084/m9.figshare.12613397.v1
title: Agile Coaching Data Extraction

description: Dataset used for agile coaching paper
DOI: 10.6084/m9.figshare.12613421.v2
title: Mindfulness and Equanimity Moderate Approach/Avoidance Motor-Responses

description: date from <b>Mindfulness and Equanimity Moderate Approach/Avoidance Motor-Responses</b>
DOI: 10.6084/m9.figshare.12613421.v1
title: Study2

description: date from <b>Mindfulness and Equanimity Moderate Approach/Avoidance Motor-Responses</b>
DOI: 10.17632/f2bnnnm5zc.2
title: Box Suite Recommendation

description: This data was used to select optimal box suites for a hypothetical e-commerce retailer based on a set of candidate boxes, stored in boxes.csv, and a set of shipments, stored in shipments.csv. Each shipment in shipments.csv is comprised of items selected from the set of candidate items stored in items.csv. For details about the contents of these data files and how they were used, refer to the arXiv preprint: https://arxiv.org/pdf/2004.11533.pdf
DOI: 10.6084/m9.figshare.12613277
title: Supplementary Material for: Nonmosaic Trisomy 19p13.3p13.2 Resulting from a Rare Unbalanced t(Y;19)(q12;p13.2) Translocation in a Patient with Pachygyria and Polymicrogyria

description: Nonmosaic trisomy involving 19p13.3p13.2 is a very uncommon abnormality. At present, only 12 cases with this genetic condition have been reported in the literature. However, the size of the trisomic fragment is heterogeneous and thus, the clinical spectrum is variable. Herein, we report the clinical and cytogenetic characterization of a 5-year-old boy with nonmosaic trisomy 19p13.3p13.2 (7.38 Mb), generated by a derivative Y chromosome resulting from a de novo unbalanced translocation t(Y;19)(q12;p13.2). We demonstrated the integrity of the euchromatic regions in the abnormal Y chromosome to confirm the pure trisomy 19p. Our patient shares some clinical features described in other reported patients with pure trisomy 19p, such as craniofacial anomalies, developmental delay, and heart defects. Different to previous reports, our case exhibits frontal pachygyria and polymicrogyria. These additional features contribute to further delineate the clinical spectrum of trisomy 19p13.3p13.2.
DOI: 10.6084/m9.figshare.12613223
title: Supplementary Material for: Three-Dimensional Primary Cell Culture: A Novel Preclinical Model for Pancreatic Neuroendocrine Tumors

description: Molecular mechanisms underlying the development and progression of pancreatic neuroendocrine tumors (PanNETs) are still insufficiently understood. Efficacy of currently approved PanNET therapies is limited. While novel treatment options are being developed, patient stratification permitting more personalized treatment selection in PanNET is yet not feasible since no predictive markers are established. The lack of representative in vitro and in vivo models as well as the rarity and heterogeneity of PanNET are prevailing reasons for this. In this study, we describe an in vitro 3-dimensional (3-D) human primary PanNET culture system as a novel preclinical model for more personalized therapy selection. We present a screening platform allowing multicenter sample collection and drug screening in 3-D cultures of human primary PanNET cells. We demonstrate that primary cells isolated from PanNET patients and cultured in vitro form islet-like tumoroids. Islet-like tumoroids retain a neuroendocrine phenotype and are viable for at least 2 weeks in culture with a high success rate (86%). Viability can be monitored continuously allowing for a per-well normalization. In a proof-of-concept study, islet-like tumoroids were screened with three clinically approved therapies for PanNET: sunitinib, everolimus and temozolomide. Islet-like tumoroids display varying in vitro response profiles to <i>distinct therapeutic regimes</i>. Treatment response of islet-like tumoroids differs also <i>between patient</i> samples. We believe that the presented human PanNET screening platform is suitable for personalized drug testing in a larger patient cohort, and a broader application will help in identifying novel markers predicting treatment response and in refining PanNET therapy.
DOI: 10.6084/m9.figshare.12613208
title: Ballot Photographs as Cues

description: Data set use for analysis in the following publication:<br>Banducci, Susan A., Jeffrey A. Karp, Michael Thrasher, and Colin Rallings. "Ballot photographs as cues in low‐information elections." <i>Political psychology</i> 29, no. 6 (2008): 903-917.<br><br><br>
DOI: 10.6084/m9.figshare.12613220
title: Supplemental data

description: Data source 1Analysis of correlation between the CpG methylation (450K arrays) and RNA transcripts (RNAseq) levels within the same gene in tumour samples.Data source 2The multi-omics driver scores for all ERGs<br>
DOI: 10.6084/m9.figshare.12613208.v1
title: Ballot Photographs as Cues

description: Data set use for analysis in the following publication:<br>Banducci, Susan A., Jeffrey A. Karp, Michael Thrasher, and Colin Rallings. "Ballot photographs as cues in low‐information elections." <i>Political psychology</i> 29, no. 6 (2008): 903-917.<br><br><br>
DOI: 10.6084/m9.figshare.12613154
title: The GluPro suite of curated cereal seed storage prolamin protein sequence datasets

description: Curated protein sequence datasets of the prolamin seed storage proteins present in bread wheat (GluPro v 1.1 and v 1.2), pasta wheat (GluPro v 2 and v 2.1), barley (GluPro v 3), rye (GluPro v 4), oats (GluPro v 5) and a compendium database containing all species sequences (GluPro v 6 and 6.1). These sequences were retrieved from UniProt, NCBI Protein Database, and genomic and transcriptomic data, where available.
DOI: 10.6084/m9.figshare.12613088
title: Figure 4 - CRESS Cap Treefiles

description: Figure 4 - CRESS Cap CCA1 Treefiles<br>(CCA 1 - 3)
DOI: 10.6084/m9.figshare.12613076
title: Figure 4 - CRESS Cap CCA2 alignment (LINSi Leave Gap)

description: Figure 4 - CRESS Cap CCA2 alignment (LINSi Leave Gap)
DOI: 10.6084/m9.figshare.12613082
title: Figure 4 - CRESS Cap CCA3 alignment (LINSi Leave Gap)

description: Figure 4 - CRESS Cap CCA3 alignment (LINSi Leave Gap)
DOI: 10.6084/m9.figshare.12613082.v1
title: Figure 4 - CRESS Cap CCA3 alignment (LINSi Leave Gap)

description: Figure 4 - CRESS Cap CCA3 alignment (LINSi Leave Gap)
DOI: 10.6084/m9.figshare.12613088.v1
title: Figure 4 - CRESS Cap Treefiles

description: Figure 4 - CRESS Cap CCA1 Treefiles<br>(CCA 1 - 3)
DOI: 10.6084/m9.figshare.12613061
title: sBCBG data

description: Data and NEST code used to generate the figures of Girard B, Lienard J, Gutierrez CE, Delord B, Doya K. A biologically constrained spiking neural network model of the primate basal ganglia with overlapping pathways exhibits action selection. Eur J Neurosci. 2020;00: 1–24.
DOI: 10.6084/m9.figshare.12613070
title: Figure 4 - CRESS Cap CCA1 alignment (LINSi Leave Gap)

description: Figure 4 - CRESS Cap CCA1 (LINSi Leave Gap)
DOI: 10.6084/m9.figshare.12613061.v1
title: sBCBG data

description: Data and NEST code used to generate the figures of Girard B, Lienard J, Gutierrez CE, Delord B, Doya K. A biologically constrained spiking neural network model of the primate basal ganglia with overlapping pathways exhibits action selection. Eur J Neurosci. 2020;00: 1–24.
DOI: 10.6084/m9.figshare.12613070.v1
title: Figure 4 - CRESS Cap CCA1 alignment (LINSi Leave Gap)

description: Figure 4 - CRESS Cap CCA1 (LINSi Leave Gap)
DOI: 10.6084/m9.figshare.12613076.v1
title: Figure 4 - CRESS Cap CCA2 alignment (LINSi Leave Gap)

description: Figure 4 - CRESS Cap CCA2 alignment (LINSi Leave Gap)
DOI: 10.6084/m9.figshare.12612998
title: Underlying Data 1

description: Underlying Data<br>
DOI: 10.6084/m9.figshare.12612953
title: Supplementary Material for: Programmed Cell Death Ligand Expression Drives Immune Tolerogenesis across the Diverse Subtypes of Neuroendocrine Tumours

description: <b><i>Introduction:</i></b> A comprehensive characterization of the tumour microenvironment is lacking in neuroendocrine tumours (NETs), where programmed cell death-1 receptor-ligand (PD-1/PD-L1) inhibitors are undergoing efficacy testing. <b><i>Objective:</i></b> We investigated drivers of cancer-related immunosuppression across NETs of various sites and grades using multi-parameter immunohistochemistry and targeted transcriptomic profiling. <b><i>Methods:</i></b> Tissue microarrays (<i>n</i> = 102) were stained for PD-L1 and 2 and indoleamine deoxygenase-1 (IDO-1) and evaluated in relationship to functional characteristics of tumour-infiltrating T-lymphocytes (TILs) and biomarkers of hypoxia/angiogenesis. PD-L1 expression was tested in circulating tumour cells (CTCs, <i>n</i> = 12) to evaluate its relationship with metastatic dissemination. <b><i>Results:</i></b> PD-L1 expression was highest in lung NETs (<i>n</i> = 30, <i>p</i> = 0.007), whereas PD-L2 was highest in pancreatic NETs (<i>n</i> = 53, <i>p</i> &lt; 0.001) with no correlation with grade or hypoxia/angiogenesis. PD-L1<sup>+</sup> NETs (<i>n</i> = 26, 25%) had greater CD4<sup>+</sup>/FOXP3<sup>+</sup> and CD8<sup>+</sup>/PD1<sup>+</sup> TILs (<i>p</i> &lt; 0.001) and necrosis (<i>p</i> = 0.02). CD4<sup>+</sup>/FOXP3<sup>+</sup> infiltrate had the highest PD-L1/IDO-1 co-expressing tumours (<i>p</i> = 0.006). Grade 3 well-differentiated NETs had lower CD4<sup>+</sup>/FOXP3<sup>+</sup> and CD8<sup>+</sup>/PD1<sup>+</sup> TIL density (<i>p</i> &lt; 0.001), and NanoString immune profiling revealed enrichment of macrophage-related transcripts in cases with poorer prognosis. We identified PD-L1(+) CTC subpopulations in 75% of evaluated patients (<i>n</i> = 12). <b><i>Conclusions:</i></b> PD-L1 expression correlates with T-cell exhaustion independent of tumour hypoxia and is enhanced in a subpopulation of CTCs, suggesting its relevance to the progression of NETs. These findings support a potential therapeutic role for PD-L1 inhibitors in a subset of NETs.
DOI: 10.6084/m9.figshare.12612992
title: Extended Data 1

description: Extended Data<br>
DOI: 10.6084/m9.figshare.12612896
title: Supplementary Material for: Analysis of Innate and Adaptive Immunological Characteristics in Patients with IgG4-Related Disease

description: <b><i>Background:</i></b> Immunoglobulin G4-related disease (IgG4-RD) is a systemic immunological disorder characterized by fibro-inflammatory conditions; however, the pathobiology of IgG4-RD has not been fully identified. <b><i>Objective:</i></b> This study aimed to analyze systemic differences of innate and adaptive immune cells from healthy controls and patients with IgG4-RD. <b><i>Methods:</i></b> Healthy controls (<i>n</i> = 9) and IgG4-RD patients (<i>n</i> = 7) were recruited with informed consent. Peripheral blood was collected from healthy controls and IgG4-RD patients, and three blood samples from IgG4-RD patients were re-collected two months after the last rituximab (RTX) treatment. The various immune cells and cytokine productions were measured by flow cytometry. <b><i>Results:</i></b> Blood CD14<sup>+</sup> monocytes and steady-state follicular helper T cells were increased in patients with IgG4-RD. However, there were no changes in other immune cell populations, including B cells, CD4 T cells, CD8 T cells, and innate lymphoid cells. Also, the TGF-β-producing CD14<sup>+</sup> monocytes were significantly augmented in patients with IgG4-RD. Two months after RTX treatment, total B cells (CD19<sup>+</sup>) were depleted; however, the expressions of TGF-β from CD14<sup>+</sup> monocytes remained unchanged. <b><i>Conclusion:</i></b> These findings showed that IgG4-RD is related to the increment of CD14<sup>+</sup> monocytes. Besides, controlling increased TGF-β-producing CD14<sup>+</sup> monocytes with RTX treatment might be a conducive way to regulate IgG4-RD.
DOI: 10.6084/m9.figshare.12612914
title: Underlying Data

description: Underlying Data<br>
DOI: 10.6084/m9.figshare.12612890
title: Extended Data

description: Questionair in Khmer and English<br>
DOI: 10.17632/34zz94gkch.1
title: Genomes of banyan fig and pollinator wasp provide insights into fig-wasp coevolution-Zhang et al

description: Additional Tables and Figures supporting the manuscript.
DOI: 10.6084/m9.figshare.12612869
title: Increased N deposition, rather than warming, strongly affects the functional structure of soil microbial community in a subtropical forest

description: Low-latitude forest ecosystems are characterized by high productivity, high mineral nitrogen (N) levels and low soil organic carbon (C) levels. The continuous increase of both the global temperature and N deposition has been predicted to stimulate microbial communities and their function. However, because of the difficulty of field experimentation in mountain forests, the underlying mechanisms remain unclear. We examined the functional gene composition, structure, and metabolic potential of soil microbial communities after a 4-year exposure to warming and N addition using a functional gene microarray (GeoChip 5.0) in the context of subtropical forests.
DOI: 10.6084/m9.figshare.12612890.v1
title: Extended Data

description: Questionair in Khmer and English<br>
DOI: 10.6084/m9.figshare.12612896.v1
title: Supplementary Material for: Analysis of Innate and Adaptive Immunological Characteristics in Patients with IgG4-Related Disease

description: <b><i>Background:</i></b> Immunoglobulin G4-related disease (IgG4-RD) is a systemic immunological disorder characterized by fibro-inflammatory conditions; however, the pathobiology of IgG4-RD has not been fully identified. <b><i>Objective:</i></b> This study aimed to analyze systemic differences of innate and adaptive immune cells from healthy controls and patients with IgG4-RD. <b><i>Methods:</i></b> Healthy controls (<i>n</i> = 9) and IgG4-RD patients (<i>n</i> = 7) were recruited with informed consent. Peripheral blood was collected from healthy controls and IgG4-RD patients, and three blood samples from IgG4-RD patients were re-collected two months after the last rituximab (RTX) treatment. The various immune cells and cytokine productions were measured by flow cytometry. <b><i>Results:</i></b> Blood CD14<sup>+</sup> monocytes and steady-state follicular helper T cells were increased in patients with IgG4-RD. However, there were no changes in other immune cell populations, including B cells, CD4 T cells, CD8 T cells, and innate lymphoid cells. Also, the TGF-β-producing CD14<sup>+</sup> monocytes were significantly augmented in patients with IgG4-RD. Two months after RTX treatment, total B cells (CD19<sup>+</sup>) were depleted; however, the expressions of TGF-β from CD14<sup>+</sup> monocytes remained unchanged. <b><i>Conclusion:</i></b> These findings showed that IgG4-RD is related to the increment of CD14<sup>+</sup> monocytes. Besides, controlling increased TGF-β-producing CD14<sup>+</sup> monocytes with RTX treatment might be a conducive way to regulate IgG4-RD.
DOI: 10.6084/m9.figshare.12612914.v1
title: Underlying Data

description: Underlying Data<br>
DOI: 10.6084/m9.figshare.12612842
title: Table S6 from Brain microRNAs among social and solitary bees

description: Results from genome scans for miRNA seed matches in Rfam. Descriptions for each sheet and column header are provided in the ‘Metadata’ sheet.
DOI: 10.6084/m9.figshare.12612845
title: Table S5 from Brain microRNAs among social and solitary bees

description: Enrichment results for predicted targets of lineage-specific miRs and “social genes”. Includes gene lists, conversion lists based on reciprocal blastp results, and overlap test statistics. Column head descriptions are in ‘ColumnDetails’ sheet.
DOI: 10.6084/m9.figshare.12612839
title: Table S8 from Brain microRNAs among social and solitary bees

description: Predicted targets and orthogroup ages of lineage-specific microRNAs in each species. Descriptions for each sheet and column header are provided in the ‘Metadata’ sheet.