cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive130188.20240510.9
title: Bacillus subtilis (Ehrenberg 1835) Cohn 1872

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130189.20240510.9
title: Bacillus subtilis (Ehrenberg 1835) Cohn 1872

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130190.20240510.9
title: Bacillus thermoamylovorans Combet-Blanc et al. 1995 emend. Coorevits et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130191.20240510.9
title: Bacillus thermoamylovorans Combet-Blanc et al. 1995 emend. Coorevits et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130192.20240510.9
title: Bacillus xiamenensis Lai et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130193.20240916.9.1
title: Bacillus pakistanensis Roohi et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130194.20240510.9
title: Bacillus algeriensis Bendjama et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.r93bzh
title: Occurrence Download

description: A dataset containing 11179 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus falcata Michx."
 ]
}

 The dataset includes 11179 records from 211 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060475-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive130195.20240916.9.1
title: Neobacillus mesonae (Liu et al. 2014) Patel and Gupta 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.11153209
title: Gut microbiome strain-sharing within isolated village social networks (Social Network)
title: Social Network Data

description: Abstract

When humans assemble into face-to-face social networks, they create an extended environment that permits exposure to the microbiome of other people, thereby shaping the composition and diversity of the microbiome at individual and population levels. Here, we use comprehensive social network mapping and detailed microbiome sequencing data in 1,787 adults within 18 isolated villages in Honduras to investigate the relationship between social network structure and gut microbiome composition. Using both species-level and strain-level data, we show that microbial sharing occurs between many relationship types, notably including non-familial and non-household connections. Using strain-sharing data alone, we can confidently predict a wide variety of relationship types (AUC ~0.72). This strain-level sharing extends to second-degree social connections in a network, suggesting the relevance of the extended network with respect to microbiome composition. We also observe that socially central individuals are more microbially similar to the overall village than socially peripheral individuals. Using a subset of 301 people in 4 villages whose microbiome was also measured 2 years later, we observed greater convergence in strain-sharing in connected versus otherwise similar unconnected co-villagers. Finally, we observe that clusters of both species and strains occur within clusters of people in the village social networks, providing the social niches within which microbiome biology and phenotypic impact are manifested.

Data Description

Social-network data for the 1,787 participants in the study. Each line identifies a tie between two individuals ('ego' and 'alter') and the type of the relationship between the individuals.
DOI: 10.5281/zenodo.11153210
title: Gut microbiome strain-sharing within isolated village social networks (Social Network)
title: Social Network Data

description: Abstract

When humans assemble into face-to-face social networks, they create an extended environment that permits exposure to the microbiome of other people, thereby shaping the composition and diversity of the microbiome at individual and population levels. Here, we use comprehensive social network mapping and detailed microbiome sequencing data in 1,787 adults within 18 isolated villages in Honduras to investigate the relationship between social network structure and gut microbiome composition. Using both species-level and strain-level data, we show that microbial sharing occurs between many relationship types, notably including non-familial and non-household connections. Using strain-sharing data alone, we can confidently predict a wide variety of relationship types (AUC ~0.72). This strain-level sharing extends to second-degree social connections in a network, suggesting the relevance of the extended network with respect to microbiome composition. We also observe that socially central individuals are more microbially similar to the overall village than socially peripheral individuals. Using a subset of 301 people in 4 villages whose microbiome was also measured 2 years later, we observed greater convergence in strain-sharing in connected versus otherwise similar unconnected co-villagers. Finally, we observe that clusters of both species and strains occur within clusters of people in the village social networks, providing the social niches within which microbiome biology and phenotypic impact are manifested.

Data Description

Social-network data for the 1,787 participants in the study. Each line identifies a tie between two individuals ('ego' and 'alter') and the type of the relationship between the individuals.
DOI: 10.13145/bacdive130196.20240916.9.1
title: Bacillus altitudinis Shivaji et al. 2006 emend. Liu et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130197.20240916.9.1
title: Bacillus filamentosus Sonalkar et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130198.20240916.9.1
title: Metabacillus crassostreae (Chen et al. 2015) Patel and Gupta 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.11150476
title: Gut microbiome strain-sharing within isolated village social networks
DOI: 10.13145/bacdive130199.20240916.9.1
title: Bacillus encimensis Dastager et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130200.20240510.9
title: Halobacillus hunanensis Peng et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130202.20240510.9
title: Geobacillus thermodenitrificans subsp. thermodenitrificans (Manachini et al. 2000) Cihan et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130203.20240510.9
title: Geobacillus icigianus Bryanskaya et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130204.20240510.9
title: Virgibacillus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130205.20240916.9.1
title: Virgibacillus natechei Amziane et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130207.20240510.9
title: Paucisalibacillus algeriensis Bendjama et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130208.20240916.9.1
title: Lysinibacillus sphaericus (Meyer and Neide 1904) Ahmed et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130210.20240510.9
title: Aeribacillus pallidus (Scholz et al. 1988) Miñana-Galbis et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130211.20240916.9.1
title: Domibacillus enclensis Sonalkar et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130213.20240916.9.1
title: Melghiribacillus thermohalophilus Addou et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130214.20240916.9.1
title: Bartonella elizabethae (Daly et al. 1993) Brenner et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130215.20240916.9.1
title: Bifidobacterium lemurum Modesto et al. 2015 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130216.20240916.9.1
title: Pseudoscardovia radai Killer et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130217.20240510.9
title: Afipia lausannensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130218.20240510.9
title: Bosea sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130219.20240510.9
title: Oligotropha sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130220.20240510.9
title: Bradyrhizobium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130221.20240510.9
title: Bradyrhizobium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130222.20240510.9
title: Bradyrhizobium paxllaeri Durán et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130223.20240510.9
title: Tardiphaga sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130224.20240510.9
title: Tardiphaga sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130225.20240916.9.1
title: Variibacter gotjawalensis Kim et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130226.20240916.9.1
title: Brevibacterium jeotgali Choi et al. 2013

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130227.20240916.9.1
title: Trinickia symbiotica (Sheu et al. 2012) Estrada-de Los Santos et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130228.20240916.9.1
title: Paraburkholderia diazotrophica (Sheu et al. 2013) Sawana et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130229.20240510.9
title: Paraburkholderia dilworthii (De Meyer et al. 2014) Sawana et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130230.20240916.9.1
title: Paraburkholderia eburnea (Kang et al. 2014) Sawana et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.fh7qwk
title: Occurrence Download

description: A dataset containing 32425800 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Canada"
 ]
}

 The dataset includes 32425800 records from 1190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095250-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hgu9f
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "Geometry POLYGON((116.34109 39.98422,116.43448 39.98422,116.43448 40.06546,116.34109 40.06546,116.34109 39.98422))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 90 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058265-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dkg2q9
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eschscholzia rhombipetala Greene"
 ]
}

 The dataset includes 55 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203664-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nlarvr
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Paepalanthus spixianus Mart.",
 "TaxonKey is Hymenophyllum silveirae Christ",
 "TaxonKey is Paepalanthus xiphophyllus Ruhland",
 "TaxonKey is Deianira damazioi E.F.Guim."
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095255-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2d854r
title: Occurrence Download

description: A dataset containing 572 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eschscholzia ramosa (Greene) Greene"
 ]
}

 The dataset includes 572 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203663-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2a4ux
title: Occurrence Download

description: A dataset containing 1916 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is United States of America",
 {
 "or" : [
 "StateProvince is Alaska",
 "StateProvince is ALASKA ?",
 "StateProvince is Alaska (State)",
 "StateProvince is Alaska State"
 ]
 },
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Canis latrans Say, 1823",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)",
 "TaxonKey is Ochotona collaris (Nelson, 1893)"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1916 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058272-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.anvxk6
title: Occurrence Download

description: A dataset containing 25622 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zostera marina L."
 ]
}

 The dataset includes 25622 records from 227 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095256-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjet9e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Escobedia brachydonta Pennell"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203665-230224095556074/datasets/export for details.
DOI: 10.15468/dl.p4af53
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((116.35097 39.97573,116.43448 39.97573,116.43448 40.04251,116.35097 40.04251,116.35097 39.97573))"
 ]
}

 The dataset includes 103 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058275-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2q3au
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aloysia dusenii Moldenke"
 ]
}

 The dataset includes 37 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095290-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt2842
title: Occurrence Download

description: A dataset containing 420 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Escobedia laevis Cham. & Schltdl."
 ]
}

 The dataset includes 420 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203669-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whywgh
title: Occurrence Download

description: A dataset containing 7274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orchidaceae",
 "Country is Venezuela (Bolivarian Republic of)"
 ]
}

 The dataset includes 7274 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058280-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69ccez
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Etlingera barioensis A.D.Poulsen"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203720-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdh3tt
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ferocactus histrix (DC.) G.E.Linds.",
 "Country is Mexico",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 142 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095258-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w9x5jk
title: Occurrence Download

description: A dataset containing 772414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-107.15908 33.583,-106.89035 33.583,-106.59069 40.268,-106.88571 40.26801,-107.15908 33.583))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 772414 records from 393 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017221-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zq23l7
title: Occurrence Download

description: A dataset containing 649 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliophobius Peters, 1846"
 ]
}

 The dataset includes 649 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026824-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ydqwa
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pourtalesia jeffreysi Thomson, 1873",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 82 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069760-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.