cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6462590
title: Assessing mutual trust among EU members: evidence from the European Arrest Warrant

description: International cooperation on criminal justice requires mutual trust: a belief that the partner's legal system functions adequately and adheres to fundamental norms. The European Union builds its judicial-cooperation efforts on a presumption of mutual trust: EU members are assumed to trust each other's justice system since they share a commitment to human rights and the rule of law. Skeptics argue, however, that such trust does not really exist given the wide variation in legal standards and practices across Europe. Yet such skepticism has not been supported by systematic evidence. This article seeks to offer such evidence and to quantify the impact of the lack of mutual trust. It does so by examining the record of British and Irish participation in the European Arrest Warrant: a fast-track process of surrender of fugitives between Member States. We find that judicial authorities in Britain and Ireland deviate from the mutual-trust presumption: they accord a more favorable treatment to Member States with a stronger rule of law or a better human-rights record – and this considerably affects the rate of surrenders. This finding offers important implications for the EU's justice policy and for understanding cooperation against crime more broadly.
DOI: 10.6084/m9.figshare.6462590.v1
title: Assessing mutual trust among EU members: evidence from the European Arrest Warrant

description: International cooperation on criminal justice requires mutual trust: a belief that the partner's legal system functions adequately and adheres to fundamental norms. The European Union builds its judicial-cooperation efforts on a presumption of mutual trust: EU members are assumed to trust each other's justice system since they share a commitment to human rights and the rule of law. Skeptics argue, however, that such trust does not really exist given the wide variation in legal standards and practices across Europe. Yet such skepticism has not been supported by systematic evidence. This article seeks to offer such evidence and to quantify the impact of the lack of mutual trust. It does so by examining the record of British and Irish participation in the European Arrest Warrant: a fast-track process of surrender of fugitives between Member States. We find that judicial authorities in Britain and Ireland deviate from the mutual-trust presumption: they accord a more favorable treatment to Member States with a stronger rule of law or a better human-rights record – and this considerably affects the rate of surrenders. This finding offers important implications for the EU's justice policy and for understanding cooperation against crime more broadly.
DOI: 10.6084/m9.figshare.6462542
title: Application of the filter plate microbial trap (FPMT), for cultivating thermophilic bacteria from thermal springs in Barguzin area, eastern Baikal, Russia

description: Hot springs are regarded as treasury of valuable thermophiles. Like other bacteria, thermophiles are not easily cultivated using conventional culture methods. We used an advanced cultivation method, the filter plate microbial trap (FPMT), to isolate bacteria from thermal springs. In total, 184 isolates were obtained from five thermal springs using the FPMT and standard agar plate method, and their 16S rRNA gene sequences were analyzed. FPMT allowed us to obtain a culture collection that was larger, richer, and more novel than that obtained by standard cultivation. Seven novel species were obtained using the FPMT technique, whereas only one was isolated using a standard cultivation. We also found clear differences in the patterns of phylogenetic diversity and physiological properties between isolates from two cultivation methods. The results have encouraged us to apply the FPMT method in other extreme environments and offer further support for fostering the development of new cultivation methods. Filter plate microbial trap (FPMT) allows for the exchange of chemical compounds such as nutrients, metabolites, and signal molecules from the environment into the agar, mimicking the in situ environmental conditions.
DOI: 10.6084/m9.figshare.6462542.v1
title: Application of the filter plate microbial trap (FPMT), for cultivating thermophilic bacteria from thermal springs in Barguzin area, eastern Baikal, Russia

description: Hot springs are regarded as treasury of valuable thermophiles. Like other bacteria, thermophiles are not easily cultivated using conventional culture methods. We used an advanced cultivation method, the filter plate microbial trap (FPMT), to isolate bacteria from thermal springs. In total, 184 isolates were obtained from five thermal springs using the FPMT and standard agar plate method, and their 16S rRNA gene sequences were analyzed. FPMT allowed us to obtain a culture collection that was larger, richer, and more novel than that obtained by standard cultivation. Seven novel species were obtained using the FPMT technique, whereas only one was isolated using a standard cultivation. We also found clear differences in the patterns of phylogenetic diversity and physiological properties between isolates from two cultivation methods. The results have encouraged us to apply the FPMT method in other extreme environments and offer further support for fostering the development of new cultivation methods. Filter plate microbial trap (FPMT) allows for the exchange of chemical compounds such as nutrients, metabolites, and signal molecules from the environment into the agar, mimicking the in situ environmental conditions.
DOI: 10.6084/m9.figshare.6462527
title: A network anaylsis of Doyle & Endress (2018) matrix

description: This submission includes the data for the following post on the <i>Genealogical World of Phylogenetic Networks </i>entitled:<br><i><b>Want to place a fossil in a minute? Just use neighbour-nets</b></i>https://phylonetworks.blogspot.com/2018/06/want-to-place-fossil-in-minute-just-use.html<br>It includes the graphics shown in the post and a 7z-archive with the following content: <b>Splits-NEXUS-formatted raw neighbour-net files</b>, which include the used distance matrices (*.dist).DE18.mean.dist — the all-inclusive graph (and distance matrix)<br>DE18.FG.VS.dist — a graph reduced to the focus group (fossils + Chloranthales + <i>Ceratophyllum </i>+ <i>Amborella</i>) and using a distance matrix as input generated by excluding all invariable ("constant") characters within the focus group<br><br><b>Ready-to-use NEXUS-formatted versions of Doyle & Endress' 2010 </b><b>and 2018 matrices</b> – files labelled as DE10.simple.nex and DE18.simple.nex.<br><br><b>Important citation note: </b>Make sure that when you re-use these data to cite not only this <i>figshare </i>fileset but also the original papers<br><b>Doyle JA, Endress PK. 2010</b>. Integrating Early Cretaceous fossils into the phylogeny of living angiosperms: Magnoliidae and eudicots.<i> Journal of Systematics and Evolution</i> 48:1–35.<br><b>Doyle JA, Endress PK. 2018.</b> Phylogenetic analyses of Cretaceous fossils related to Chloranthaceae and their evolutionary implications. <i>Botanical Review</i> DOI:10.1007/s12229-018-9197-6.<br>
DOI: 10.6084/m9.figshare.6462527.v1
title: A network anaylsis of Doyle & Endress (2018) matrix

description: This submission includes the data for the following post on the <i>Genealogical World of Phylogenetic Networks </i>entitled:<br><i><b>Want to place a fossil in a minute? Just use neighbour-nets</b></i>https://phylonetworks.blogspot.com/2018/06/want-to-place-fossil-in-minute-just-use.html<br>It includes the graphics shown in the post and a 7z-archive with the following content: <b>Splits-NEXUS-formatted raw neighbour-net files</b>, which include the used distance matrices (*.dist).DE18.mean.dist — the all-inclusive graph (and distance matrix)<br>DE18.FG.VS.dist — a graph reduced to the focus group (fossils + Chloranthales + <i>Ceratophyllum </i>+ <i>Amborella</i>) and using a distance matrix as input generated by excluding all invariable ("constant") characters within the focus group<br><br><b>Ready-to-use NEXUS-formatted versions of Doyle & Endress' 2010 </b><b>and 2018 matrices</b> – files labelled as DE10.simple.nex and DE18.simple.nex.<br><br><b>Important citation note: </b>Make sure that when you re-use these data to cite not only this <i>figshare </i>fileset but also the original papers<br><b>Doyle JA, Endress PK. 2010</b>. Integrating Early Cretaceous fossils into the phylogeny of living angiosperms: Magnoliidae and eudicots.<i> Journal of Systematics and Evolution</i> 48:1–35.<br><b>Doyle JA, Endress PK. 2018.</b> Phylogenetic analyses of Cretaceous fossils related to Chloranthaceae and their evolutionary implications. <i>Botanical Review</i> DOI:10.1007/s12229-018-9197-6.<br>
DOI: 10.6084/m9.figshare.6462503
title: ari_data

description: ground truth files for ARI scores and pre-optimized parameters<br>
DOI: 10.6084/m9.figshare.6462503.v1
title: ari_data

description: ground truth files for ARI scores and pre-optimized parameters<br>
DOI: 10.6084/m9.figshare.6462458
title: A dummy bigwig file for display in UCSC Genome Browser

description: This is a bedgraph file and the associated converted bigwig file, that I want to display in the UCSC Genome Browser
DOI: 10.6084/m9.figshare.6462449
title: Supplementary Material for: Pancreatic Cancer in Pregnancy Presenting with Thromboembolic Events: Case Report and Review of the Literature

description: Stroke and hepatic vein thrombosis are highly associated with neoplasia but are extremely rare events in young, pregnant women. Rare and recurrent thrombotic events in pregnancy increase the suspicion for occult malignancy. We describe the case of a healthy 31-year-old G2P1 who presented with visual changes and dysarthria during pregnancy. Imaging showed cerebral infarcts. Her thrombophilia evaluation was negative. During delivery, she was diagnosed with fulminant Budd-Chiari Syndrome. Hepatic ultrasound suggested malignancy or metastasis, and postpartum CT scan and biopsy confirmed the diagnosis of Stage IV pancreatic cancer. Although rare in pregnancy, a new diagnosis of malignancy should be considered in patients with recurrent unexplained hypercoagulable complications. We propose an evidence-based algorithm for evaluation of occult malignancy in pregnancy based upon this case and review of the literature.
DOI: 10.6084/m9.figshare.6462449.v1
title: Supplementary Material for: Pancreatic Cancer in Pregnancy Presenting with Thromboembolic Events: Case Report and Review of the Literature

description: Stroke and hepatic vein thrombosis are highly associated with neoplasia but are extremely rare events in young, pregnant women. Rare and recurrent thrombotic events in pregnancy increase the suspicion for occult malignancy. We describe the case of a healthy 31-year-old G2P1 who presented with visual changes and dysarthria during pregnancy. Imaging showed cerebral infarcts. Her thrombophilia evaluation was negative. During delivery, she was diagnosed with fulminant Budd-Chiari Syndrome. Hepatic ultrasound suggested malignancy or metastasis, and postpartum CT scan and biopsy confirmed the diagnosis of Stage IV pancreatic cancer. Although rare in pregnancy, a new diagnosis of malignancy should be considered in patients with recurrent unexplained hypercoagulable complications. We propose an evidence-based algorithm for evaluation of occult malignancy in pregnancy based upon this case and review of the literature.
DOI: 10.6084/m9.figshare.6462446
title: Reference sequences

description: These files contain the gidA protein sequence (the first gene after the origin of replication in the <i>B. pertussis </i>genome), sequences for each of the prominent <i>B. pertussis</i> IS elements, Tohama I reference genome sequence, Tohama I reference protein sequences, and draft Illumina-only genome sequences for UK36, UK38, UK39, UK48 and UK76 (these were used to estimate % identity of our nanopore-only and hybrid assemblies).
DOI: 10.6084/m9.figshare.6462446.v2
title: Reference sequences

description: These files contain the gidA protein sequence (the first gene after the origin of replication in the <i>B. pertussis </i>genome), sequences for each of the prominent <i>B. pertussis</i> IS elements, Tohama I reference genome sequence, Tohama I reference protein sequences, and draft Illumina-only genome sequences for UK36, UK38, UK39, UK48 and UK76 (these were used to estimate % identity of our nanopore-only and hybrid assemblies).
DOI: 10.6084/m9.figshare.6462446.v1
title: Reference sequences

description: These files contain the gidA protein sequence (the first gene after the origin of replication in the <i>B. pertussis </i>genome), sequences for each of the prominent <i>B. pertussis</i> IS elements, Tohama I reference genome sequence, Tohama I reference protein sequences, and draft Illumina-only genome sequences for UK36, UK38, UK39, UK48 and UK76 (these were used to estimate % identity of our nanopore-only and hybrid assemblies).
DOI: 10.6084/m9.figshare.6462443
title: BCite preliminary evaluation

description: Data and results of the preliminary evaluation of BCite, a bibliographic correction service that provides open citations as RDF data.
DOI: 10.6084/m9.figshare.6462398
title: Table EA1. Thermal evolution in the exhumed basement of a stratovolcano: Case study of the Miocene Mátra Volcano, Pannonian Basin

description: Table EA1: Locality, petrography and age-yield of the dated samples of the Recsk Igneous Complex.
DOI: 10.6084/m9.figshare.6462398.v1
title: Table EA1. Thermal evolution in the exhumed basement of a stratovolcano: Case study of the Miocene Mátra Volcano, Pannonian Basin

description: Table EA1: Locality, petrography and age-yield of the dated samples of the Recsk Igneous Complex.
DOI: 10.6084/m9.figshare.6462395
title: Table EA2. Thermal evolution in the exhumed basement of a stratovolcano: Case study of the Miocene Mátra Volcano, Pannonian Basin

description: Table EA2: Details of laser ablation ICP–MS dating of zircons from the Recsk Complex.
DOI: 10.6084/m9.figshare.6462395.v1
title: Table EA2. Thermal evolution in the exhumed basement of a stratovolcano: Case study of the Miocene Mátra Volcano, Pannonian Basin

description: Table EA2: Details of laser ablation ICP–MS dating of zircons from the Recsk Complex.
DOI: 10.6084/m9.figshare.6462380
title: Rev-rec Source - Code Reviews Dataset (SEAA2018)

description: This dataset contains source code reviews of 51 projects mined from Gerrit (14 projects, ~133K pull requests) and GitHub (37 projects, ~159K pull requests). The dataset has been used in the upcoming article: <br>Lipcak, J., Rossi, B. (2018). <i>A Large-Scale Study on Source Code Reviewer Recommendation</i>, in 44th Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2018, IEEE.<br>Included files: 51 mined JSON files (zip), summary project list with descriptive statistics (pdf), readme file (md).<br><br>
DOI: 10.6084/m9.figshare.6462344
title: Supplementary Material for: Active Reperfusion Hemorrhage during Thrombectomy: Angiographic Findings and Real-Time Correlation with the CT “Spot Sign”

description: <b><i>Introduction:</i></b> Symptomatic intracranial hemorrhage represents one of the most feared complications of endovascular reperfusion. We aim to describe a series of patients that experienced immediate reperfusion injury with active intraprocedural extravasation within the territory of the deep penetrating arteries and provide real-time correlation with CT “spot sign.” <b><i>Methods:</i></b> This was a retrospective analysis of patients that suffered reperfusion injury with active arterial extravasation during endovascular stroke treatment in two tertiary care centers. <b><i>Results:</i></b> Five patients were identified. Median age was 63 (58–71) years, 66% were male. Median NIHSS was 13.5 (9.5–23.0), platelet level 212,000 (142,000–235,000), baseline systolic blood pressure 152 (133–201) mm Hg, and non-contrast CT ASPECTS 7.0 (6.5–9.0). Two patients were taking aspirin and one had received intravenous thrombolysis. There were three middle cerebral artery M1, one internal carotid artery terminus, and one vertebrobasilar junction occlusion. Three patients had anterior circulation tandem occlusions. Stroke etiology was extracranial atherosclerosis (<i>n</i> = 2), intracranial atherosclerosis (<i>n</i> = 2), and cervical dissection (<i>n</i> = 1). The median time from onset to puncture was 5.5 (3.9–8.6) h. Intravenous heparin was administered in all patients (median dose of 4,750 [3,250–6,000] units) and intravenous abciximab in four. All tandem cases had the cervical lesion addressed first. Four lenticulostriates and one paramedian pontine artery were involved. Intraprocedural flat-panel CT was performed in four (80%) cases and provided real-time correlation between the active contrast extravasation and the “spot sign.” The bailout included use of protamine, blood pressure control, and balloon guide catheter or intracranial compliant balloon inflation plus coiling of targeted vessel. All patients had angiographic cessation of bleeding at the end of the procedure with parenchymal hemorrhage type 1 in one case and type 2 in four. Three patients had modified Rankin score of 4 and two were dead at 90 days. <b><i>Conclusions:</i></b> Active reperfusion hemorrhage involving perforator arteries was observed to correlate with the CT “spot sign” and to be associated with poor outcomes.
DOI: 10.6084/m9.figshare.6462341
title: Crowd annotations of visual features for 100 images from the ISIC 2017 lesion classification challenge

description: This dataset consists of additional images for 100 images from the ISIC 2017 challenge training data. <br>We collected the annotations during a first year undergraduate project course on medical image analysis (course code 8QA01) at the Department of Biomedical Engineering, Eindhoven University of Technology. In groups of five or six, the students learnt to automatically measure image features, such as "asymmetry", in images of skin lesions from the ISIC 2017 challenge.<br>Each group was encouraged to decide which features they wanted to measure, invent their own way of grading the images, and assess each feature visually by at least three people. The students were not blinded to the melanoma/non-melanoma labels in the data, since the data is openly available online. <br><br>The shared file contains the annotations of group 7. They annotated 5 types of visual features by 6 annotators each. For example, the column Asymmetry_7_1 is the assessment of Asymmetry by the 1st annotator, and so forth.<br>The file also contains several variables from the ISIC challenge: ID of image, melanoma and keratosis labels, and sex and age of the patient, if available.
DOI: 10.6084/m9.figshare.6462338
title: Data of Lake Gonghai

description: Data of climate proxies from Lake Gonghai since last deglaciation to 7 ka BP. Including pollen-based precipitation reconstruction; % tree pollen; % herb pollen; organic matter content; magnetic susceptibility; mean grain size; carbonate content. (Original reference: Chen, F. H., Xu, Q. H., Chen, J. H., Birks, H. J., Liu, J. B., Zhang, S. R., et al. (2015). East Asian summer monsoon precipitation variability since the last deglaciation. <i>Scientific Reports</i>, 5, 11186.)
DOI: 10.6084/m9.figshare.6462338.v2
title: The partial orginal data from Lake Gonghai

description: Sedimentary records of climate proxies from Lake Gonghai since last Glacial to 7 ka BP. Including Pollen-based precipitation reconstruction from Gonghai lake; % tree pollen; % herb pollen; organic matter content; magnetic susceptibility; mean grain size; carbonate content. (Original reference: Chen, F. H., Xu, Q. H., Chen, J. H., Birks, H. J., Liu, J. B., Zhang, S. R., et al. (2015). East Asian summer monsoon precipitation variability since the last deglaciation. <i>Scientific Reports</i>, 5, 11186.)
DOI: 10.6084/m9.figshare.6462326
title: Biebermann_H_JCEM_suppl_material.pdf

description: Supplemental material manuscript, JCEM, Biebermann Heike, June 2018<br>
DOI: 10.6084/m9.figshare.6462311
title: Supplementary Files - Ocaña-Pallarès et al. 2018

description: Supplementary files for the manuscript Ocaña-Pallarès et al. 2018 entitled "<i>Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathway".</i><i><br></i>
DOI: 10.6084/m9.figshare.6462326.v1
title: Biebermann_H_JCEM_suppl_material.pdf

description: Supplemental material manuscript, JCEM, Biebermann Heike, June 2018<br>
DOI: 10.6084/m9.figshare.6462275
title: Supplement Section

description: Supplement Section
DOI: 10.6084/m9.figshare.6462275.v1
title: Supplement Section

description: Supplement Section
DOI: 10.6084/m9.figshare.6462269
title: Checkers Statistics

description: Checkers Statistics
DOI: 10.6084/m9.figshare.6462269.v1
title: Checkers Statistics

description: Checkers Statistics
DOI: 10.6084/m9.figshare.6462248
title: Soft tissue esthetic improvements following a modified twin block appliance: A prospective study

description: Cl II div 1 patients often suffer from several adverse facial characteristics which may impair their social well-being. The objective of the current study was to evaluate the esthetic improvements in such patients by using a modified twin block appliance. Thirty five adolescent patients with mandibular deficiency underwent treatment with a modified twin block for a mean period of 13 months. The esthetic changes before and after therapy, were compared using parametric Paired t-tests analysis. P values less than 0.05 were considered significant. Before the study, informed patient consent was obtained from the patients and the protocol of the study was approved by the respective university research ethics committee. The pre and post treatment lateral photographs were obtained with the patients head in the natural head position, by a single operator. The photographs were then scanned and transferred to a computer. Adobe Photoshop software was used to produce silhouettes for evaluation of the soft tissue changes. The pre and post treatment silhouettes were then coded to blind the evaluator. The silhouettes were then manually traced and analyzed by a previously calibrated examiner on a blind basis.Facial convexity, lip incompetence, upper lip protrusion and columellar inclination significantly decreased (p&lt;0.05) while Merrifield’s Z-angle nasolabial angle, lower lip length, and mentolabial angle significantly increased (p&lt;0.05). Vertical facial height ratio, lower lip protrusion, upper lip length as well as nasal projection and inclination, did not change significantly (p&gt;0.05)Our findings indicated that a modified form of twin block can be effective in profile improvement of patients with minimum untoward effects. Our findings indicated that a modified form of twin block can be effective in profile improvement of patients with minimum untoward effects.