cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/z6p55dvbxj
title: Ultrasound image dataset for ovarian follicular development detection in pigs

description: Pigs are one of the largest scale livestock species globally. In large-scale pig farms, the reproductive management of sows is a critical control point to ensure production capacity and reduce costs. The formulation of the sow breeding management program mainly depends on the accurate assessment of the development of ovarian follicles and ovulation status in sows. A comprehensive dataset of high-resolution images, capturing various size follicles in different stages and conditions, has been assembled. The dataset includes 868 ultrasound images, categorizing follicles as four sizes: Small, Medium, Large, Preovulatory follicles in gilts and sows . This initiative aims to enhance the reproductive efficiency of sows in pig farms and facilitate research into sow reproductive physiology.
DOI: 10.6084/m9.figshare.28641899.v1
title: mafft-nexus-edge-trimmed-clean-70p.phylip

description: This file contains the 70% UCE matrix used for molecular phylogenetic analyses to assess monophyly and relationships of the new genus Magdalenichthys (Siluriformes: Heptapteridae)
DOI: 10.6084/m9.figshare.5924794.v4
title: Word information

description: Information on word percentage known, prevalence, and frequency. Columns are: spelling (unique text identifier), count_total, percent_total (totalpercentage known), prevalence_total, count_nts, percent_nts, prevalence_nts, count_ntl, percent_ntl, prevalence_ntl, freq (frequency per million), zipf (zipf frequency). This is the file people will find most useful if they simply want information about word knowledge in Spain or Latin America.
DOI: 10.6084/m9.figshare.7038710.v2
title: Yokohama Specie Bank flow-of-funds data, 1893-1908 (calculation of net amounts) [multiple file formats, including .xslx, .csv, and .pdf]. These matrices contain calculations of the amounts of funds transferred, converted into Japanese yen.

description: This fileset contains half-yearly flow-of-funds data for the branch network of the Yokohama Specie Bank between 1893 and 1908. Data has been organized into matrices.This set shows <i>net</i> 'amounts transferred'; totals are in <i>Japanese yen</i>. The matrices document the process for arriving at net transferred amounts, concretely by: 1) transposing matrices, 2) deducting the transposed matrix from the original one, and deleting negative values by means of logical expressions (the IF function). The end result, in the fourth quadrant of the spreadsheet, contains the values that were fed into the SNA-software packages.<br>These matrices have formed the basis for visualizations in social network analysis (SNA) software packages, as, for instance, UCINet, Pajek, Gephi, and the igraph-package in R.
DOI: 10.17632/7g72xrcgjp
title: triSurfaceImmersion: Computing volume fractions and signed distances from triangulated surfaces immersed in unstructured meshes

description: We propose a numerical method that enables the calculation of volume fractions from triangulated surfaces immersed in unstructured meshes. First, the signed distances are calculated geometrically near the triangulated surface. For this purpose, the computational complexity has been reduced by using an octree space subdivision. Second, an approximate solution of the Laplace equation is used to propagate the inside/outside information from the surface into the solution domain. Finally, volume fractions are computed from the signed distances in the vicinity of the surface. The volume fraction calculation utilizes either geometrical intersections or a polynomial approximation based on signed distances. An adaptive tetrahedral decomposition of polyhedral cells ensures a high absolute accuracy. The proposed method extends the admissible shape of the fluid interface (surface) to triangulated surfaces that can be open or closed, disjoint, and model objects of technical geometrical complexity.

Current results demonstrate the effectiveness of the proposed algorithm for two-phase flow simulations of wetting phenomena, but the algorithm has broad applicability. For example, the calculation of volume fractions is crucial for achieving numerically stable simulations of surface tension-driven two-phase flows with the unstructured Volume-of-Fluid method. The method is applicable as a discrete phase-indicator model for the unstructured hybrid Level Set/Front Tracking method.

The implementation is available on GitLab [27].
DOI: 10.17632/k2v57kf6mp
title: Data from: Can sustainable investments outperform traditional benchmarks? Evidence from global stock markets

description: Supporting information related to the manuscript “Can sustainable investments outperform traditional benchmarks? Evidence from global stock markets”. The “Supplementary information (database).xlsx” file summarizes the manuscript related data and provides step-by-step procedures to collect the original series and make the necessary transformations for subsequent (financial performance) analysis. The database comprises daily US$ prices of five sustainability indices (and of five market portfolios, used as benchmarks for the sustainability indices) and the risk-free rate, represented by the 4-week US Treasury bill (T-bill) rate, from January 1st 2013 to December 31st 2018. The file also provides the probabilities of the assessed indices’ returns falling between -1.0% and 1.0%, as discussed in Section 4.2 of the manuscript.
DOI: 10.6084/m9.figshare.27641982.v2
title: Data from: Responses of subsoil organic carbon to climate warming and cooling is determined by microbial community rather than its molecular composition

description: Little is currently known about how long-term climate changes modulate the relationship between soil organic carbon (SOC) molecular composition, microbial community and SOC storage, and the mechanisms involved. Here, we show substantial changes in subsoil SOC in the Qinghai-Tibetan alpine grasslands over 16 years of soil warming and cooling. Warming reduced SOC content by 8.5%, while cooling increased it by 7.0%. Neither warming nor cooling affected plant- and microbial-derived molecular components. However, warming elevated fungal-to-bacterial biomass ratio (F/B) and gram-positive to gram-negative bacterial biomass ratio (G+/G-) by 15.0% and 8.6%, respectively, whereas cooling reduced them by 4.5% and 9.6%. Warming reduced SOC storage by directly increasing F/B and G+/G- and indirectly decreasing the soil carbon-to-nitrogen ratio, whereas cooling enhanced SOC storage primarily by decreasing F/B. Conventional warming experiments, which consider only climate warming and neglect cooling, may underestimate the negative impacts of warming on subsoil SOC pools in alpine grasslands.
DOI: 10.6084/m9.figshare.29086376.v1
title: This is data that was collected to examine the antecedents of knowledge worker productivity in Uganda

description: The study was about examining the drivers of knowledge worker productivity in Uganda. The population used in the study was that of knowledge workers from ICT sector.
DOI: 10.6084/m9.figshare.9755477.v1
title: log_kvrh

description: <pre>Matbench v0.1 test dataset for predicting DFT log10 VRH-average bulk modulus from structure. Adapted from Materials Project database. Removed entries having a formation energy (or energy above the convex hull) more than 150meV and those having negative G_Voigt, G_Reuss, G_VRH, K_Voigt, K_Reuss, or K_VRH and those failing G_Reuss &lt;= G_VRH &lt;= G_Voigt or K_Reuss &lt;= K_VRH &lt;= K_Voigt and those containing noble gases. Retrieved April 2, 2019.</pre>
DOI: 10.17632/bmjc74dyjs
title: Remdesivir, Molnupiravir and Nirmatrelvir remain active against  SARS-CoV-2 Omicron and other variants of concern

description: Activity of various antivirals upon infection of VeroE6-GFP cells with different SARS-CoV-2 VOC. VeroE6-GFP cells were pre-treated overnight with serial dilutions of the compounds. The next day, cells were infected with SARS-CoV-2 at a multiplicity of infection (MOI) of 0.001 tissue culture infectious dose (TCID50) per cell. The number of fluorescent pixels of GFP signal, determined by high-content imaging on day 4 post-infection, was used as read-out. The percentage of inhibition was calculated by subtracting background (number of fluorescent pixels in the untreated infected control wells) and normalizing to the untreated-uninfected control wells (also background subtracted). The 50% effective concentration (EC50, the concentration of compound required for fifty percent recovery of cell-induced fluorescence) was determined using logarithmic interpolation. These experiments were performed in the presence of the Pgp-inhibitor CP-100356 (0.5 µM) in order to limit compound efflux.
DOI: 10.17632/tgpfcv4csy
title: External Shocks, Macroeconomic Fluctuations and Welfare Implications: A Small Open Economy New Keynesian DSGE Model with an Export Commodity Sector

description: This dataset is an additional appendix material to estimate the paper: External Shocks, Macroeconomic Fluctuations and Welfare Implications: A Small Open Economy New Keynesian DSGE Model with an Export Commodity Sector.
DOI: 10.6084/m9.figshare.14679480.v1
title: Multispectral grape images dataset

description: 1283 multispectral images with 37 reflectance bands in numpy array format (.npy) of 5 different grape varieties originating from the province of Murcia, Spain. Ready to be used in any supervised learning pipeline to fit classification or regression models.<br>Ground truth is provided together with the images in a tab separated text file with the information of each grape type, weight, Brix index and anthocyanines content
DOI: 10.6084/m9.figshare.22815308.v1
title: Data from "Constant warming overestimates the negative effect on community stability relative to gradual warming"

description: There are six spreadsheets with data. The spreadsheet contains the raw data. All the methodological details can be found in the article.
DOI: 10.17632/8h9295v4t3
title: Historical dataset of mills for Galicia in the Austro-Hungarian Empire/southern Poland from 1880 to the 1930s.

description: We present the dataset of mills from 1880 and 1920s-1930s in the area of the former Galicia (78,500 km2), now in Ukraine and Poland. We found 4,022 mill locations for 1880 and 3,588 for the 1920s-1930s. We present them as shapefile, GML, GeoJSON, KML formats with attributes for seven types of mills for 1880 and ten types of mills for 1920s-1930s, and mills counted in a 10 km grid.

Our data contains two point layers and six grid layers (10 km side squares). All data is available in an open shapefile, GML, GeoJSON, KML formats, commonly used in Geographic Information Systems.
Point layers contain the following attributes for each of the mills: auto-numbered numeric identifier (ID), type (Type), map sheet date (Map_year), longitude (Long), and latitude (Lat).
According to the legend of these maps and explanations, the following types of mills can be distinguished for 1880:

1 – Gristmill (ger. Fruchtmühle),
2 – Sawmill (ger. Sägemühle),
3 – Paper mill (ger. Papiermühle),
4 – Powder mill (ger. Pulvermühle),
5 – Fulling mill (ger. Walkmühle),
6 – Windmill (ger. Windmühle),
7 – Ship mill, (ger. Schiffmühle).

For the 1920s-1930s, the following types of mills were distinguished according to the legend of these maps and explanations.

1 – Watermill,
2 – Steam mill,
3 – Sawmill,
4 – Sawmill with water wheel,
5 – Motor sawmill,
6 – Steam sawmill,
7 – Steam mill,
8 – Windmill,
9 – Wind turbine,
10 – Ship mill.

A reference grid designed by the European Environment Agency (EEA) in the ETRS 1989 LAEA projection (EPSG 9820) was used to create the grid layers, consisting of cells with sides of 10 km. In the set we provide, it contains the following attributes: auto-numbered numeric identifier of the cell (FID), cell code (CellCode), east (EofOrigin) and north (NofOrigin) cell start coordinates and an attribute (Count) in which aggregated mill types are counted for each cell: gristmills, sawmills, windmills 

The data can be used in economic, demographic and environmental reconstructions, e.g. to estimate historical anthropopressure related to settlement, agriculture and forestry. Mills are often associated with river structures such as floodgates, dams, and millraces and therefore they are a good example of human interference in river ecosystems. They can also be one criteria for identifying areas where the local population used traditional environmental knowledge. It can be useful for a contemporary assessment of the environment’s suitability for devices using renewable energy sources. Finally, the data on the remains of former mills is suitable for the protection of cultural heritage sites that are technical monuments related to traditional food processing and industry.

This research was funded by the Ministry of Science and Higher Education, Republic of Poland under the frame of “National Programme for the Development of Humanities” 2015–2021, as a part of the GASID project (Galicia and Austrian Silesia Interactive Database 1857–1910, 1aH 15 0324 83)
DOI: 10.17632/9mhhywx9b6
title: LINF_190016300

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/j8kg8c5f6p
title: Using Incomplete Complex Modes for Model Updating of Monopiled Offshore Wind Turbines

description: The following items are available from the corresponding author: • Monopiled offshore wind turbine models built by ANSYS software; • Codes of model updating of four major sources of modeling error; and • Data of the numerical studies.
DOI: 10.6084/m9.figshare.14971644.v8
title: Spatial and seasonal variability in volatile organic sulfur compounds in seawater and the overlying atmosphere of the Bohai and Yellow Seas

description: Volatile organic sulfur compounds (VSCs) including carbon disulfide (CS<sub>2</sub>), dimethyl sulfide (DMS), and carbonyl sulfide (COS) were surveyed in the seawater and atmosphere of the Bohai and Yellow Seas during spring and summer of 2018. The data of DMS, COS, and CS<sub>2 </sub>concentrations in the seawater and atmosphere, and the sea-to-air fluxes of COS, DMS, and CS<sub>2</sub> were shown.
DOI: 10.6084/m9.figshare.23290115.v1
title: Hydrogen Combustion supplemetary data from an active learning study

description: This data is generated in an active learning study of hydrogen combustion, with energies and forces generated using the ωB97X-V DFT functional with the cc-pVTZ basis set. It is build on top of the original HCombustion dataset: https://figshare.com/articles/dataset/Hydrogen_Combustion_using_IRC_AIMD_and_normal_modes/19601689<br>There are two parts to this data. al_added_npz which are data added during the active learning cycle, and irc_dialation which are the irc dialation data described in the paper Beyond potential energy surface benchmarking: a complete application of machine learning to chemical reactivity (link to be added).<br>All data are stored in npz format. They can be loaded through numpy by using:np.load("name.npz", allow_pickle=True)This will load a dictionary with the following keys:'R': positions, array of (n_snapshots, n_atoms, 3)'Z': atomic numbers, array of (n_snapshots, n_atoms)'E': energy, array of (n_snapshots, 1)'F': forces, array of (n_snapshots, n_atoms, 3)coordinates are in the unit of Angstrom, energy in kcal/mol, forces in kcal/mol/A.
DOI: 10.6084/m9.figshare.29135555.v1
title: All data.xlsx

description: The data set was originated from a research project aiming at testing the applicability of the K-bicarbonate method for lime requirement of aquaculture ponds in the Mekong delta of Vietnam.
DOI: 10.6084/m9.figshare.4040112.v3
title: WS-DREAM dataset#1

description: **************************************************************************** * README file for 339 * 5825 Web service QoS dataset * Last updated: 2016/04/27 **************************************************************************** This dataset describes real-world QoS evaluation results from 339 users on 5,825 Web services. Note that we have recently updated the location information (e.g., IP, AS, Latitude, Longitude) of users and services into the dataset. <br>**************************************************************************** Reference paper**************************************************************************** Please refer to the following papers for the detailed descriptions of this dataset: <br>- Zibin Zheng, Yilei Zhang, and Michael R. Lyu, “Investigating QoS of Real- World Web Services”, IEEE Transactions on Services Computing , vol.7, no.1, pp.32-39, 2014. <br>- Zibin Zheng, Yilei Zhang, and Michael R. Lyu, “Distributed QoS Evaluation for Real-World Web Services,” in Proc. of the 8th International Conference on Web Services (ICWS'10), Miami, Florida, USA, July 5-10, 2010, pp.83-90.<br>IF YOU USE THIS DATASET IN PUBLISHED RESEARCH, PLEASE CITE EITHER OF THE ABOVE PAPERS. THANKS! <br>**************************************************************************** Acknowledgements**************************************************************************** We would like to thank PlanetLab (http://www.planet-lab.org/) for collecting the dataset, and IPLocation (http://www.iplocation.net/) for collecting the location information. We also thank Prof. Mingdong Tang (HNUST) for contributing the AS information of the users and services. <br>**************************************************************************** License**************************************************************************** The MIT License (MIT)Copyright (c) 2016, WS-DREAM, CUHK (https://wsdream.github.io)<br> <pre><br></pre>
DOI: 10.17632/34nfrk36dt
title: Vehicle Insurance data

description: The vehicle insurance dataset was obtained from the Ethiopian Insurance Corporation. It is a large dataset that can be used for machine-learning purposes.
DOI: 10.26188/28943000.v1
title: S.P.A.C.E. Planetary Justice in Anthropogenic Times - A Media Arts Game for Wondering with Children and Land

description: S.P.A.C.E is a speculative media arts game designed to support children, educators, and communities to wonder, play, and co-create with Land, technologies, and the more-than-human world. Developed through the SWISP Lab residency <i>Friends of the Secret Underground</i> (FOSU), the game invites participants into immersive and sensorial engagements with ecological sites.Grounded in justice-oriented pedagogies, S.P.A.C.E unfolds through five interlinked zones of inquiry:<b>S</b>: <i>Site, Sight, Speculation</i><b>P</b>: <i>Playful Pedagogies and Practices</i><b>A</b>: <i>Artful Affect and Activisms</i><b>C</b>: <i>Creating, Curiosity, Community</i><b>E</b>: <i>Ecologies, Energies, Ethics</i>Each zone is a portal to media-rich provocations that blend soundscapes, light, video, and digital remixing with nature-based play and storytelling. Players remix site-based materials, imagine futures, and create speculative artworks that challenge anthropocentric logics and re-story place.S.P.A.C.E supports curriculum innovation and transdisciplinary learning across art, science, and sustainability. It is ideal for museums, galleries, schools, and community learning contexts committed to planetary justice and creative inquiry.
DOI: 10.6084/m9.figshare.11619618.v1
title: Non-pharmacological labour pain management methods and risk of caesarean section: a retrospective cohort study

description: We collected data from all clinical records of women admitted for delivery at the University Hospital of the Federal University of Uberlandia (HCU-UFU) between January 1, 2013 and December 31, 2017. Age, ethnicity, schooling, parity, gestational age, previous caesarean section, spontaneous labour before admission or induction/augmentation of labour are included in the dataset.
DOI: 10.6084/m9.figshare.20043131.v3
title: DigitalAppendix.pdf

description: Digital Appendix of the paper <br> „Making Third-Party Sellers More Attractive – The Case of Amazon“
DOI: 10.6084/m9.figshare.22651825.v2
title: Re-processed T1D/ctrls 1-million PBMCs in AnnData format

description: This is a re-analysis of the previously published (https://www.biorxiv.org/content/10.1101/2022.08.27.505512v1.full), T1D vs health control scRNAseq data. The original count matrix in mtx format is available here: https://cdn.parsebiosciences.com/1M_PBMC_T1D_Parse.zip
DOI: 10.6084/m9.figshare.28828241.v1
title: CheloniansTraits: a comprehensive trait database of global turtles and tortoises

description: We compiled 69 traits data for all 358 recognized Chelonian species, utilizing ~2,000 literature sources, covering 33 morphological, 21 life-history, 7 ecological traits, and 8 conservation information.
DOI: 10.17632/cxkv26n853
title: Melanocytic Pathology Assessment Tool and Hierarchy for Diagnosis (MPATH-Dx) Tutorial

description: The Melanocytic Pathology Assessment Tool and Hierarchy for Diagnosis (MPATH-Dx) Tutorial is a 30-minute online education tool to showcase the MPATH-Dx schema and its associated classifications (Class I -benign through Class V -invasive melanoma), including instructions on how to map diagnostic interpretations into these classes, followed by case examples and exercises to ensure understanding.

Capsule Summary: 

• The value of a tool to provide standardized classification of the currently diverse pathology terminology for melanocytic skin lesions, in order to facilitate management, is recognized by dermatopathologists. 
• With a simple tutorial, dermatopathologists can confidently and correctly apply the MPATH-Dx schema to improve communication and patient care.

Refer to Reisch, et al. "Implementing the Melanocytic Pathology Assessment Tool and Hierarchy for Diagnosis (MPATH-Dx): Long Term Effect of a Simple Educational Intervention," JAAD International (2023):

Background: A standardized pathology management tool for melanocytic skin lesions may improve patient care by simplifying interpretation and categorization of the diverse terminology currently extant. 

Objective: An online educational intervention teaching dermatopathologists to use the MPATH-Dx schema collapsing multiple diagnostic terms into 5 classes ranging from benign to invasive melanoma. 

Methods: Practicing U.S. dermatopathologists in a 2-year educational intervention study involving a brief tutorial followed by practice on melanocytic lesions, with the goal of teaching pathologists how to correctly use the MPATH-Dx schema; competence using the MPATH-Dx tool 12-24 months post-intervention was assessed. 

Results: At pre-intervention, confidence using the MPATH-Dx tool was high despite lacking prior familiarity, and confidence increased post-intervention. During the intervention, participants used the MPATH-Dx tool correctly for 90% of their interpretations; at post-intervention, participants used the MPATH-Dx tool correctly for 88% of their interpretations. 

Limitations: Future research should examine implementing a standardized pathology assessment schema in actual clinical practice.

Conclusions: Dermatopathologists can be taught to confidently and competently use the MPATH-Dx schema with a simple educational tutorial followed by practice.

Key words: 
Dermatopathology; melanocytic skin lesions; continuing medical education; intervention study; standardized histology schema

Funding sources: Supported by the National Cancer Institute (R01 CA201376 and R01 CA151306). The funding agency had no role in the study design; in the collection, analysis, and interpretation of data; in the writing of the report; or in the decision to submit the article for publication. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.

Conflict of Interest: None disclosed.