cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25573/data.13531016.v1
title: Mariana Crow (Corvus kubaryi) genome assembly and annotation

description: This dataset includes the de novo genome assembly and annotation for the Mariana Crow/Åga (<i>Corvus kubaryi</i>) described in Cortes-Rodriguez et al. 2019. Population Genomics and Structure of the Critically Endangered Mariana Crow (<i>Corvus kubaryi</i>). <i>Genes</i>. 10(3), 187. The whole genome shotgun data have been published in the NCBI SRA under accession SRX4386043 and duplicated in the ENA under accession ERX3480537.
DOI: 10.17632/pwk49ydthz.1
title: Data for: Brittle damage in the Têt normal fault system (eastern Pyrénées, France): implications for hydrothermal activity - Fracture measurements

description: Supp-Mat3 : features of the main fractures sets (opening, spacing, length, and host rock lithology) for each measure station (i.e. outcrop). Supp-Mat4: individual fracture measurements (dip direction, dip). Location of the measurement stations is given in the Table and mapped on Supplementary Material 2.
DOI: 10.17632/dbnvz2x4wh.1
title: Data for: Race, Inequality, and Social Capital in the U.S. Counties

description: This data set contains data about social capital and other covariates at the United States’ county-level. Following Rupasingha et al. (2006), the social capital index captures the common factor among density measures of 10 different types of associations, voter turnout rates, U.S. decennial census participation rates, and the number of non-profit organizations. Based on Knack (2003), we create associational densities measures as a proxy for both bridging and bonding social capital. Including data on income inequality, racial diversity, minority group size, average household income, educational attainment, the ratio of a family household, the size of migration population, and female labor market participation rates, the data covers 3,104 U.S. counties for both 2009 and 2014. This data set is associated with the article “Race, Inequality, and Social Capital in the U.S. Counties.”
DOI: 10.6084/m9.figshare.13531907.v1
title: Additional file 2 of Multi-omic signatures of atherogenic dyslipidaemia: pre-clinical target identification and validation in humans

description: Additional file 2. The complete dataset involving results from untargeted (LC/MS) as well as targeted determinations (LC/MS or ELISA).
DOI: 10.6084/m9.figshare.13531907
title: Additional file 2 of Multi-omic signatures of atherogenic dyslipidaemia: pre-clinical target identification and validation in humans

description: Additional file 2. The complete dataset involving results from untargeted (LC/MS) as well as targeted determinations (LC/MS or ELISA).
DOI: 10.6084/m9.figshare.13532011.v1
title: Additional file 2 of Aedes aegypti SGS1 is critical for Plasmodium gallinaceum infection of both the mosquito midgut and salivary glands

description: Additional file 2: Proteomic analyses of salivary glands extract of LVP and SGS1KO mosquitos
DOI: 10.6084/m9.figshare.13532011
title: Additional file 2 of Aedes aegypti SGS1 is critical for Plasmodium gallinaceum infection of both the mosquito midgut and salivary glands

description: Additional file 2: Proteomic analyses of salivary glands extract of LVP and SGS1KO mosquitos
DOI: 10.6084/m9.figshare.13532012.v1
title: Additional file 2 of Acquired mutations and transcriptional remodeling in long-term estrogen-deprived locoregional breast cancer recurrences

description: Additional file 2 Title of Data: Data Supplement, Description of Data: Supplemental numerical data supporting manuscript labeled in excel tabs as S1-S9.
DOI: 10.6084/m9.figshare.13532020
title: Additional file 1 of Microbial diversity of co-occurring heterotrophs in cultures of marine picocyanobacteria

description: Additional file 1: Table S1. Metadata associated with the isolation of each cyanobacterial culture. Table S2. Indicator Species associated with either Prochlorococcus or Synechococcus cultures. Table S3. OTUs shared between this study, Behringer et al. 2018 [55], and Zheng et al. 2018 [40] datasets. Table S4. Spearman correlation between OTUs in Fig. 5c and aggregate abundance of Prochlorococcus and Synechococcus in bioGEOTRACES. Table S5. Results of PERMANOVA Analysis using adonis2 with univariate tests of main effects and tests for interaction effects of pairwise combinations of factors.
DOI: 10.6084/m9.figshare.13532020.v1
title: Additional file 1 of Microbial diversity of co-occurring heterotrophs in cultures of marine picocyanobacteria

description: Additional file 1: Table S1. Metadata associated with the isolation of each cyanobacterial culture. Table S2. Indicator Species associated with either Prochlorococcus or Synechococcus cultures. Table S3. OTUs shared between this study, Behringer et al. 2018 [55], and Zheng et al. 2018 [40] datasets. Table S4. Spearman correlation between OTUs in Fig. 5c and aggregate abundance of Prochlorococcus and Synechococcus in bioGEOTRACES. Table S5. Results of PERMANOVA Analysis using adonis2 with univariate tests of main effects and tests for interaction effects of pairwise combinations of factors.
DOI: 10.6084/m9.figshare.13532012
title: Additional file 2 of Acquired mutations and transcriptional remodeling in long-term estrogen-deprived locoregional breast cancer recurrences

description: Additional file 2 Title of Data: Data Supplement, Description of Data: Supplemental numerical data supporting manuscript labeled in excel tabs as S1-S9.
DOI: 10.6084/m9.figshare.13532030
title: Additional file 3 of Mapping evidence of mobile health technologies for disease diagnosis and treatment support by health workers in sub-Saharan Africa: a scoping review

description: Additional file 3: Methodological quality assessment.
DOI: 10.6084/m9.figshare.13532030.v1
title: Additional file 3 of Mapping evidence of mobile health technologies for disease diagnosis and treatment support by health workers in sub-Saharan Africa: a scoping review

description: Additional file 3: Methodological quality assessment.
DOI: 10.6084/m9.figshare.13532080
title: Additional file 1 of Systematic elucidation of the pharmacological mechanisms of Rhynchophylline for treating epilepsy via network pharmacology

description: Additional file 1. Detail information of the putative targets of Rhy and validated therapeutic targets on epilepsy.
DOI: 10.6084/m9.figshare.13532080.v1
title: Additional file 1 of Systematic elucidation of the pharmacological mechanisms of Rhynchophylline for treating epilepsy via network pharmacology

description: Additional file 1. Detail information of the putative targets of Rhy and validated therapeutic targets on epilepsy.
DOI: 10.6084/m9.figshare.13532083
title: Additional file 2 of Systematic elucidation of the pharmacological mechanisms of Rhynchophylline for treating epilepsy via network pharmacology

description: Additional file 2. Detail information of GO and KEGG enrichment analyses.
DOI: 10.6084/m9.figshare.13532083.v1
title: Additional file 2 of Systematic elucidation of the pharmacological mechanisms of Rhynchophylline for treating epilepsy via network pharmacology

description: Additional file 2. Detail information of GO and KEGG enrichment analyses.
DOI: 10.6084/m9.figshare.13532122
title: Additional file 7 of Two-step generation of mesenchymal stem/stromal cells from human pluripotent stem cells with reinforced efficacy upon osteoarthritis rabbits by HA hydrogel

description: Additional file 7: Table S4. The gene expression profiling of hESC-MSCs and hiPSC-MSCs.
DOI: 10.6084/m9.figshare.13532135
title: Additional file 2 of Subgingival microbiota of dogs with healthy gingiva or early periodontal disease from different geographical locations

description: Additional file 2: Table S2. Table summarises estimated mean proportions, odds ratios, 95% confidence intervals and p-values for OTUs that had significant main effects of A) location, B) age, C) average gingivitis, D) breed size, E) Percentage healthy teeth and F) percentage periodontitis teeth.
DOI: 10.6084/m9.figshare.13532122.v1
title: Additional file 7 of Two-step generation of mesenchymal stem/stromal cells from human pluripotent stem cells with reinforced efficacy upon osteoarthritis rabbits by HA hydrogel

description: Additional file 7: Table S4. The gene expression profiling of hESC-MSCs and hiPSC-MSCs.
DOI: 10.6084/m9.figshare.13532132
title: Additional file 1 of Subgingival microbiota of dogs with healthy gingiva or early periodontal disease from different geographical locations

description: Additional file 1: Table S1. OTUs that had significant interactions with location and other covariates. A) Age by location, B) average gingivitis by location, C) breed size by location, D) age by average gingivitis, E) age by percentage healthy teeth, F) age by percentage periodontitis teeth, G) average gingivitis by breed size, H) average gingivitis by percentage healthy teeth, I) average gingivitis by percentage periodontitis teeth, J) breed size by percentage healthy teeth, K) breed size by percentage healthy teeth, L) Percentage healthy teeth by percentage periodontitis teeth and M) age by breed size. Tables summarise estimated mean proportions, odds ratios, 95% confidence intervals and p-values.
DOI: 10.6084/m9.figshare.13532132.v1
title: Additional file 1 of Subgingival microbiota of dogs with healthy gingiva or early periodontal disease from different geographical locations

description: Additional file 1: Table S1. OTUs that had significant interactions with location and other covariates. A) Age by location, B) average gingivitis by location, C) breed size by location, D) age by average gingivitis, E) age by percentage healthy teeth, F) age by percentage periodontitis teeth, G) average gingivitis by breed size, H) average gingivitis by percentage healthy teeth, I) average gingivitis by percentage periodontitis teeth, J) breed size by percentage healthy teeth, K) breed size by percentage healthy teeth, L) Percentage healthy teeth by percentage periodontitis teeth and M) age by breed size. Tables summarise estimated mean proportions, odds ratios, 95% confidence intervals and p-values.
DOI: 10.6084/m9.figshare.13532180
title: Additional file 2 of Cell–cell coupling and DNA methylation abnormal phenotypes in the after-hours mice

description: Additional file 2: Table S1. Fitting parameters of in vitro syncronized circadian genes.
DOI: 10.6084/m9.figshare.13532180.v1
title: Additional file 2 of Cell–cell coupling and DNA methylation abnormal phenotypes in the after-hours mice

description: Additional file 2: Table S1. Fitting parameters of in vitro syncronized circadian genes.
DOI: 10.6084/m9.figshare.13532198
title: Additional file 8 of Cell–cell coupling and DNA methylation abnormal phenotypes in the after-hours mice

description: Additional file 8: Table S3. RRBS libraries statistics.
DOI: 10.6084/m9.figshare.13532198.v1
title: Additional file 8 of Cell–cell coupling and DNA methylation abnormal phenotypes in the after-hours mice

description: Additional file 8: Table S3. RRBS libraries statistics.
DOI: 10.6084/m9.figshare.13532201
title: Additional file 9 of Cell–cell coupling and DNA methylation abnormal phenotypes in the after-hours mice

description: Additional file 9: Table S4. CpG and CGI coverage of RRBS dataset.
DOI: 10.6084/m9.figshare.13532201.v1
title: Additional file 9 of Cell–cell coupling and DNA methylation abnormal phenotypes in the after-hours mice

description: Additional file 9: Table S4. CpG and CGI coverage of RRBS dataset.
DOI: 10.6084/m9.figshare.13532209.v1
title: Additional file 6 of mGlu3 receptor regulates microglial cell reactivity in neonatal rats

description: Additional file 6: Table S1. Number of samples, statistics, and p values.
DOI: 10.6084/m9.figshare.13532209
title: Additional file 6 of mGlu3 receptor regulates microglial cell reactivity in neonatal rats

description: Additional file 6: Table S1. Number of samples, statistics, and p values.
DOI: 10.6084/m9.figshare.13532213
title: Additional file 2 of recoup: flexible and versatile signal visualization from next generation sequencing

description: Additional file 2. Library(recoup): Code used to generate all the figures.
DOI: 10.6084/m9.figshare.13532216
title: Additional file 3 of recoup: flexible and versatile signal visualization from next generation sequencing

description: Additional file 3. The complete questionnaire and the answers.
DOI: 10.6084/m9.figshare.13532216.v1
title: Additional file 3 of recoup: flexible and versatile signal visualization from next generation sequencing

description: Additional file 3. The complete questionnaire and the answers.
DOI: 10.6084/m9.figshare.13532230
title: Additional file 4 of Cell-specific characterization of the placental methylome

description: Additional file 4 Table S2 Linear modelling results for differentially methylated CpGs. Results are presented for every tested CpG. Third trimester (term) results.
DOI: 10.6084/m9.figshare.13532213.v1
title: Additional file 2 of recoup: flexible and versatile signal visualization from next generation sequencing

description: Additional file 2. Library(recoup): Code used to generate all the figures.
DOI: 10.6084/m9.figshare.13532236.v1
title: Additional file 6 of Cell-specific characterization of the placental methylome

description: Additional file 6 Table S4 DMR results for each cell type for term comparisons (CSV 11093 kb)
DOI: 10.6084/m9.figshare.13532227
title: Additional file 3 of Cell-specific characterization of the placental methylome

description: Additional file 3 Table S1 Linear modelling results for differentially methylated CpGs. Results are presented for every tested CpG. First trimester results.
DOI: 10.6084/m9.figshare.13532230.v1
title: Additional file 4 of Cell-specific characterization of the placental methylome

description: Additional file 4 Table S2 Linear modelling results for differentially methylated CpGs. Results are presented for every tested CpG. Third trimester (term) results.
DOI: 10.6084/m9.figshare.13532227.v1
title: Additional file 3 of Cell-specific characterization of the placental methylome

description: Additional file 3 Table S1 Linear modelling results for differentially methylated CpGs. Results are presented for every tested CpG. First trimester results.
DOI: 10.6084/m9.figshare.13532236
title: Additional file 6 of Cell-specific characterization of the placental methylome

description: Additional file 6 Table S4 DMR results for each cell type for term comparisons (CSV 11093 kb)
DOI: 10.6084/m9.figshare.13532239.v1
title: Additional file 7 of Cell-specific characterization of the placental methylome

description: Additional file 7 Table S5 GO enrichment for cell DMCs. Table S6 KEGG enrichment for cell DMCs. Table S7 List of imprinted genes and regions from multiple studies. Table S8 Linear modelling results of repetitive element methylation and cell type. Table S9 600 reference probes for cell deconvolution for term/third trimester. Table S10 600 reference probes for cell deconvolution for first trimester. Table S11 Performance metrics for deconvolution algorithms on in-silico mixtures. Table S12 Statistical testing results for cell composition versus sex, ethnicity, and gestational age. Each cell type proportion was tested against each sample variable.
DOI: 10.6084/m9.figshare.13532233.v1
title: Additional file 5 of Cell-specific characterization of the placental methylome

description: Additional file 5 Table S3 DMR results for each cell type for first trimester comparisons (CSV 8251 kb)
DOI: 10.6084/m9.figshare.13532233
title: Additional file 5 of Cell-specific characterization of the placental methylome

description: Additional file 5 Table S3 DMR results for each cell type for first trimester comparisons (CSV 8251 kb)
DOI: 10.6084/m9.figshare.13532239
title: Additional file 7 of Cell-specific characterization of the placental methylome

description: Additional file 7 Table S5 GO enrichment for cell DMCs. Table S6 KEGG enrichment for cell DMCs. Table S7 List of imprinted genes and regions from multiple studies. Table S8 Linear modelling results of repetitive element methylation and cell type. Table S9 600 reference probes for cell deconvolution for term/third trimester. Table S10 600 reference probes for cell deconvolution for first trimester. Table S11 Performance metrics for deconvolution algorithms on in-silico mixtures. Table S12 Statistical testing results for cell composition versus sex, ethnicity, and gestational age. Each cell type proportion was tested against each sample variable.
DOI: 10.6084/m9.figshare.13532269
title: Additional file 12 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 12. The regions (peaks) which were uniquely accessible in BRSV-challenged calves, which were positioned in previously identified BRD susceptibility loci and BRD associated marker variants.
DOI: 10.6084/m9.figshare.13532275
title: Additional file 1 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 1. Sequence read statistics: the total read numbers, percentages of mapped reads, mitochondrial mapped reads and duplicate reads, the non-redundant fractions and the number of reads used for peak calling.
DOI: 10.6084/m9.figshare.13532278
title: Additional file 2 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 2. Matrix displaying the number of peaks per sample, the number of peak intersections between pairwise comparisons and the BEDtools Jaccard similarity score between pairwise comparisons.
DOI: 10.6084/m9.figshare.13532287.v1
title: Additional file 5 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 5. Differentially accessible regions (peaks) from the DeSeq2 analysis within the Diffbind R package, between BRSV challenged and control calves (P
DOI: 10.6084/m9.figshare.13532290.v1
title: Additional file 6 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 6. Differentially accessible regions (peaks) from the EdgeR analysis within the Diffbind R package, between BRSV challenged and control calves (P
DOI: 10.6084/m9.figshare.13532269.v1
title: Additional file 12 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 12. The regions (peaks) which were uniquely accessible in BRSV-challenged calves, which were positioned in previously identified BRD susceptibility loci and BRD associated marker variants.
DOI: 10.6084/m9.figshare.13532290
title: Additional file 6 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 6. Differentially accessible regions (peaks) from the EdgeR analysis within the Diffbind R package, between BRSV challenged and control calves (P
DOI: 10.6084/m9.figshare.13532296
title: Additional file 8 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 8. Regions (peaks) unique to the control calves identified through Diffbind’s occupancy analysis.
DOI: 10.6084/m9.figshare.13532263.v1
title: Additional file 10 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 10. Enriched KEGG pathways and “Biological process (BP)”, “Molecular Function (MF)” and “Cellular Component (CC)” Gene Ontology (GO) terms (P
DOI: 10.6084/m9.figshare.13532263
title: Additional file 10 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 10. Enriched KEGG pathways and “Biological process (BP)”, “Molecular Function (MF)” and “Cellular Component (CC)” Gene Ontology (GO) terms (P
DOI: 10.6084/m9.figshare.13532278.v1
title: Additional file 2 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 2. Matrix displaying the number of peaks per sample, the number of peak intersections between pairwise comparisons and the BEDtools Jaccard similarity score between pairwise comparisons.
DOI: 10.6084/m9.figshare.13532293.v1
title: Additional file 7 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 7. Regions (peaks) unique to BRSV challenged calves identified through Diffbind’s occupancy analysis.
DOI: 10.6084/m9.figshare.13532296.v1
title: Additional file 8 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 8. Regions (peaks) unique to the control calves identified through Diffbind’s occupancy analysis.
DOI: 10.6084/m9.figshare.13532299
title: Additional file 9 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 9. Enriched KEGG pathways and “Biological process (BP)”, “Molecular Function (MF)” and “Cellular Component (CC)” Gene Ontology (GO) terms (P
DOI: 10.6084/m9.figshare.13532266
title: Additional file 11 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 11. The regions (peaks) which were differentially accessible in either DeSeq2 or EdgeR, which were positioned in previously identified BRD susceptibility loci and BRD associated marker variants.
DOI: 10.6084/m9.figshare.13532275.v1
title: Additional file 1 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 1. Sequence read statistics: the total read numbers, percentages of mapped reads, mitochondrial mapped reads and duplicate reads, the non-redundant fractions and the number of reads used for peak calling.
DOI: 10.6084/m9.figshare.13532287
title: Additional file 5 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 5. Differentially accessible regions (peaks) from the DeSeq2 analysis within the Diffbind R package, between BRSV challenged and control calves (P
DOI: 10.6084/m9.figshare.13532299.v1
title: Additional file 9 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 9. Enriched KEGG pathways and “Biological process (BP)”, “Molecular Function (MF)” and “Cellular Component (CC)” Gene Ontology (GO) terms (P
DOI: 10.6084/m9.figshare.13532266.v1
title: Additional file 11 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 11. The regions (peaks) which were differentially accessible in either DeSeq2 or EdgeR, which were positioned in previously identified BRD susceptibility loci and BRD associated marker variants.