cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22109414.v7
title: Single-cell gene set enrichment analysis and transfer learning for functional annotation of scRNA-seq data

description: Although an essential step, the functional annotation of cells often proves particularly challenging in the analysis of single-cell transcriptional data. Several methods have been developed to accomplish this task. However, in most cases, these rely on techniques initially developed for bulk RNA sequencing or simply make use of marker genes identified from cell clustering followed by supervised annotation. To overcome these limitations and automatise the process, we have developed two novel methods, the single-cell gene set enrichment analysis (scGSEA) and the single cell mapper (scMAP). scGSEA combines latent data representations and gene set enrichment scores to detect coordinated gene activity at single-cell resolution. scMAP uses transfer learning techniques to repurpose and contextualise new cells into a reference cell atlas. Using both simulated and real datasets, we show that scGSEA effectively recapitulates recurrent patterns of pathways’ activity shared by cells from different experimental conditions. At the same time, we show that scMAP can reliably map and contextualise new single cell profiles on a breast cancer atlas we recently released. Both tools are provided in an effective and straightforward workflow providing a framework to determine cell function and significantly improve annotation and interpretation of scRNA-seq data.
DOI: 10.6084/m9.figshare.15022698
title: Single Cell Breast Cancer cell-line Atlas

description: Raw UMI counts of 35,276 single cell across 32 Breast Cancer Cell-lines profiled with DROP-seq platform.
DOI: 10.6084/m9.figshare.15022698.v1
title: Single Cell Breast Cancer cell-line Atlas

description: Raw UMI counts of 35,276 single cell across 32 Breast Cancer Cell-lines profiled with DROP-seq platform.
DOI: 10.5281/zenodo.7643953
title: Effect of Hydrophobicity of Fluorescent Carbon Nanoparticles on Transport in Porous Media: Column Experiment Data and Modeling

description: The data contained here are derived from sand column experiments and modeling which investigate the effects of hydrophobicity on the transport of fluorescent carbon nanoparticles (FCN) in porous media. The data consist of outlet concentrations (relative to the inlet concentrations) of FCN for a suite of experiments testing the recovery of FCN synthesized using four different pyrolysis temperatures(190C, 210C, 230C, and 250C), as well as the recovery of FCN when passed through three different sand types (Fine, Medium, and Coarse). Column experiments were tested under both saturated and unsaturated conditions to investigate the role of pore water content on FCN retention. Finally, results from tests using an inert bromide tracer are also included (File: May_et_al_Column_Experiment_Outlet_Concentrations.xlsx). Additionally, the results from modeling the observed breakthrough curves of FCN are included for three different transport models, as well as modelling results for an inert bromide tracer (File: May_et_al_Breakthrough_Curve_Modeling.xlsx). The raw output files for the two-kinetic sites model that was determined to best reproduce the observed breakthrough curves are also provided (File: May_et_al_Two_Kinetic_Sites_Model_Raw_Output.zip) Finally, the results of sand surface characterization for three sands using a scanning electron microscope are included (File: May_et_al_Sand_Surface_Characterization_SEM-DATA.zip). Please see the following paper for more details: May, D.F., B. Hassanpour, L. Sinclair, T.S. Steenhuis, and L.M. Cathles, (2023, pending), Effect of Hydrophobicity of Fluorescent Carbon Nanoparticles on Transport in Porous Media: Column Experiments and Modeling, Water Resources Research, Manuscript Submitted for Review.
DOI: 10.24339/0460fe8b-3c94-42d9-9536-c31d62ac8911
title: EU-SHARMED, Transcripts of Classroom Interactions

description: This data base contains transcripts of classroom interactions recorded in the context of the EU-SHARMED project. Primary Schools, children's age 9-11, ethics approved by the European Commission and the University of Suffolk, all transcripts anonymised. Settings location: Greater London; Region Emilia-Romagna (Italy); Region Friuli Venezia-Giulia (Italy)
DOI: 10.5281/zenodo.7018194
title: Cover crops effect on global croplands modelled by LPJ-GUESS

description: This file contains the input and output data for cover crop simulations on global scale by LPJ-GUESS. The site-level observations collected from the existing literature for model evaluation are also included. More details can be found in our Earth's Future (EF) paper.
DOI: 10.5519/qd.qfewrpil
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.22110596
title: ZnT3 and RGS14

description: ZnT3 immunolabeling in CA2 and corpus callosum of KO and WT male and female mice. CA2 is labeled with RGS14
DOI: 10.6084/m9.figshare.22110596.v1
title: ZnT3 and RGS14

description: ZnT3 immunolabeling in CA2 and corpus callosum of KO and WT male and female mice. CA2 is labeled with RGS14
DOI: 10.6084/m9.figshare.22109633
title: Numeracy_Score_Grade1_2021_22_RISE_Ethiopia.dta

description: The data contains the numeracy score of Grade 1 students in 2021/22 school year. The scores are based on direct assessment of the students at the beginning and end of school years. <br>
DOI: 10.6084/m9.figshare.22109633.v1
title: Numeracy_Score_Grade1_2021_22.dta

description: The data contains the numeracy score of Grade 1 students in 2021/22 school year. The scores are based on direct assessment of the students at the beginning and end of school years. <br>
DOI: 10.25625/tzor3x/fvw3hs
title: EFForTS_LA_B06_understorey_alien_plant_species_speciesinfo_2023-02-16.tab

description: species acronyms, full species names (with and without author naames) and families
DOI: 10.25625/tzor3x/ogy2gi
title: EFForTS_LA_B06_understorey_alien_plant_species_wideformat_2023-02-16.tab

description: Understorey alien plant species presence and absence per subplot. Table in wide format. Species are named by acronyms.
DOI: 10.25625/tzor3x/bitmhx
title: EFForTS_LA_B06_understorey_alien_plant_species_longformat_2023-02-16.tab

description: Understorey alien plant species presence per subplot. Table in long format. Species are named by acronyms.
DOI: 10.25625/tzor3x
title: EFForTS Landscape Assestment (LA) - B06 Understorey alien plant species

description: Alien plant species composition (presence/absence) per subplot. Contains species names and life form (herbaceous or woody) of all alien species recorded in 1-m²-squares in subplots A (centre), B (North), and C (East) respectively.
DOI: 10.6084/m9.figshare.22109558
title: Primary School Facility Observation Survey data in 2021/22 (RISE Ethiopia)

description: This is a survey data about the facilities in the sample schools. The data was obtained through direct observation of the sample school facilities by the fied survey superviors <br>
DOI: 10.6084/m9.figshare.22109558.v1
title: School Facility_Survey_2021_22.zip

description: This is a survey data about the facilities in the sample schools. The data was obtained through direct observation of the sample school facilities by the fied survey superviors <br>
DOI: 10.25345/c5bc3t67j
title: MassIVE MSV000091296 - MS analysis of Immunoprecipitation of Insulin receptor-beta in Cav-1 WT and knock out in brain endothelial cells
title: Immunoprecipitation was performed on Cav1 WT and KO brain endothelial cells using Insulin receptor-beta (IR-b) antibody. Proteins that interact with IR-b were detected using Mass spectrometry.
DOI: 10.6084/m9.figshare.22109264
title: Household Survey data of Grade 1 Sample Students in 2021/22 (RISE Ethiopia)

description: This is a household survey data from Grade 1 Index children. The survey was collected in November - December, 2022.
DOI: 10.6084/m9.figshare.22109264.v3
title: Household Survey data of Grade 1 Sample Students in 2021/22 (RISE Ethiopia)

description: This is a household survey data from Grade 1 Index children. The survey was collected in November - December, 2022.
DOI: 10.6084/m9.figshare.22109264.v2
title: Household Survey data from the households of Grade 1 Sample Students in 2021_22

description: This is a household survey data from Grade 1 Index children. The survey was collected in November - December, 2022.
DOI: 10.5281/zenodo.7640700
title: Replication Materials for "Bevölkerungsalterung unter Pandemiebedingungen"

description: In December 2022, the German Pension Insurance announced an estimated surplus of €2.1 billion for the past year. President Roßbach partly explained this balance with the "Corona Pandemic, which has led to an increase in mortality, especially among older people". Here I take a closer look at the demographics behind that statement. I calculate the pandemic related population deficit among ages 65 and above across Europe and look at population aging under conditions of continuously reduced life expectancy.
DOI: 10.5281/zenodo.7640699
title: Replication Materials for "Bevölkerungsalterung unter Pandemiebedingungen"

description: In December 2022, the German Pension Insurance announced an estimated surplus of €2.1 billion for the past year. President Roßbach partly explained this balance with the "Corona Pandemic, which has led to an increase in mortality, especially among older people". Here I take a closer look at the demographics behind that statement. I calculate the pandemic related population deficit among ages 65 and above across Europe and look at population aging under conditions of continuously reduced life expectancy.
DOI: 10.5281/zenodo.4091222
title: L4E - Maximum tree height extracted from LiDAR transects over the Brazilian Amazon

description: Between 2016 and 2018, the EBA airborne missions (conducted by the Brazilian National Institute for Space Research (INPE) and funded by Amazon Fund) collected airborne lidar transects of 375 ha (12.5 x 0.3 km) each. A majority of the transects were flown over randomly selected locations of old growth and second growth as forests defined by the PRODES and TerraClass databases (PRODES, INPE, 2016; TerraClass, INPE, 2014). PRODES separates forests from non-forest while TerraClass identifies second growth forest and other land covers.
description: Funding was provided by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior Brasil (CAPES; Finance Code 001); Conselho Nacional de Desenvolvimento Científico e Tecnológico (Processes 403297/2016-8 and 301661/2019-7); Amazon Fund (grant 14.2.0929.1)
DOI: 10.5281/zenodo.4091221
title: L4E - Maximum tree height extracted from LiDAR transects over the Brazilian Amazon

description: Between 2016 and 2018, the EBA airborne missions (conducted by the Brazilian National Institute for Space Research (INPE) and funded by Amazon Fund) collected airborne lidar transects of 375 ha (12.5 x 0.3 km) each. A majority of the transects were flown over randomly selected locations of old growth and second growth as forests defined by the PRODES and TerraClass databases (PRODES, INPE, 2016; TerraClass, INPE, 2014). PRODES separates forests from non-forest while TerraClass identifies second growth forest and other land covers.
description: Funding was provided by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior Brasil (CAPES; Finance Code 001); Conselho Nacional de Desenvolvimento Científico e Tecnológico (Processes 403297/2016-8 and 301661/2019-7); Amazon Fund (grant 14.2.0929.1)
DOI: 10.6073/pasta/ccf5e8bb6029ba8ceaebf2c2ea74ab7a
title: Time series of methane and carbon dioxide diffusive fluxes using an Ultraportable Greenhouse Gas Analyzer (UGGA) for Falling Creek Reservoir and Beaverdam Reservoir in southwestern Virginia, USA during 2018-2022

description: Diffusive fluxes of methane and carbon dioxide were measured using an Ultraportable Greenhouse Gas Analyzer (UGGA) in Falling Creek Reservoir (FCR) and Beaverdam Reservoir (BVR; Vinton, Virginia, USA). FCR and BVR are owned and operated by the Western Virginia Water Authority as drinking water sources for Roanoke, Virginia. The dataset consists of calculated diffusive fluxes of methane and carbon dioxide measured at the deepest site of the reservoir adjacent to the dam (2018–2022) and additional reservoir upstream sites in FCR (2018) and BVR (2022). Measurements were collected approximately fortnightly in FCR throughout the summer stratified periods of 2018–2021, while measurements from BVR were only taken in 2018 and 2022.
DOI: 10.6084/m9.figshare.22110914
title: Grade 4 mathematics teachers test score in maths test in 2021/22 (RISE Ethiopia)

description: This data was obtained by administering maths tests on those teaching mathematics at Grade 4 in June 2022.
DOI: 10.6084/m9.figshare.22110914.v1
title: Grade 4 mathematics teachers test score in maths test in 2021/22 (RISE Ethiopia)

description: This data was obtained by administering maths tests on those teaching mathematics at Grade 4 in June 2022.
DOI: 10.5517/ccdc.csd.cc23pjx8
title: CCDC 1957120: Experimental Crystal Structure Determination

description: Related Article: Nana Tang, Raphael J. Zachmann, Hui Xie, Jun Zheng, Bernhard Breit|2023|Chem.Commun.|59|2122|doi:10.1039/D2CC06972E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22110797
title: extremophile_protist_taxonomy.csv

description: Taxonomic output and 18S sequence from DADA2 PR2 database for each sequence included in phylogenetic tree.
DOI: 10.6084/m9.figshare.22110797.v1
title: extremophile_protist_taxonomy.csv

description: Taxonomic output and 18S sequence from DADA2 PR2 database for each sequence included in phylogenetic tree.
DOI: 10.6084/m9.figshare.22110788
title: extremophile_protist_isolates.csv

description: References for the cultivation conditions for each representative isolate are listed, including sampling location, GenBank Accession, and presence of published genome, if available.
DOI: 10.6084/m9.figshare.22110788.v1
title: extremophile_protist_isolates.csv

description: References for the cultivation conditions for each representative isolate are listed, including sampling location, GenBank Accession, and presence of published genome, if available.
DOI: 10.6084/m9.figshare.22110761
title: extremophile_protist_phylogeny_references.csv

description: Each source of 18S sequences included in the review, with number of sequences included, environment, sampling condition, and geographic locations.
DOI: 10.6084/m9.figshare.22110761.v1
title: extremophile_protist_phylogeny_references.csv

description: Each source of 18S sequences included in the review, with number of sequences included, environment, sampling condition, and geographic locations.
DOI: 10.6084/m9.figshare.22110980
title: Teachers and students questionnaires in 2021/22 (RISE Ethiopia)

description: The data contains completed survey questionnaires from teachers and students. The surveys were conducted in June 2022.
DOI: 10.6084/m9.figshare.22110980.v1
title: Teachers and students questionnaires in 2021/22 (RISE Ethiopia)

description: The data contains completed survey questionnaires from teachers and students. The surveys were conducted in June 2022.
DOI: 10.25345/c56m33d3s
title: MassIVE MSV000091297 - Roth_Isoforms_FLAG_P105_VS28_2023_DDA
title: FLAG AP-MS data (DDA) associated with the manuscript by Roth et al. 2023 describing the identification and characterization of neural alternative splicing events and associated PPI changes for 17 gene regulatory factors.
DOI: 10.34740/kaggle/dsv/5010949
title: COVID-19 in Muslim vs. Non-Muslim Countries
DOI: 10.34740/kaggle/dsv/4393064
title: Hadith Sahih Bukhari Project
DOI: 10.34740/kaggle/ds/2888937
title: WEF- WORLD ECONOMIC FORUM MEMBERS AND PARTNERS
DOI: 10.34740/kaggle/ds/2823646
title: Tesla Autonomous Deaths Updated 2023
DOI: 10.34740/kaggle/dsv/4795422
title: USA California for sale properties
DOI: 10.34740/kaggle/ds/2667694
title: Stream Game Date
DOI: 10.6084/m9.figshare.14035109.v1
title: The rise and fall of proboscidean ecological diversity

description: A .tre file with 300 phylogenetic trees of proboscideans without zero-length branches obtained from MrBayes
DOI: 10.17638/datacat.liverpool.ac.uk/1540
title: Ordered oxygen vacancies in the lithium-rich oxide Li4CuSbO5.5, a triclinic structure type derived from the cubic rocksalt structure
DOI: 10.25345/c52v2cm04
title: MassIVE MSV000091298 - Roth_Isoforms_BioID_Chtop_Sap30bp_VS30_VS32_2023_DDA
title: BioID data (DDA files) associated with the manuscript by Roth et al. 2023 describing the identification and characterization of neural alternative splicing events and associated PPI changes for 17 gene regulatory factors. BioID experiments were performed for two isoforms of Chtop and Sap30bp with/without inclusion of a neural-regulated exon. For Chtop, cells were also treated with MS023, an arginine methyltransferase inhibitor, at 3 concentrations (DMSO, 1uM and 4uM).
DOI: 10.6073/pasta/082d2fd5b5c0d079533f92ee7ed4c05d
title: North Temperate Lakes LTER: Chemical Limnology of Primary Study Lakes: Nutrients, pH and Carbon 1981 - current

description: Parameters characterizing the nutrient chemistry of the eleven primary lakes (Allequash, Big Muskellunge, Crystal, Sparkling, and Trout lakes, unnamed lakes 27-02 [Crystal Bog] and 12-15 [Trout Bog], Mendota, Monona, Wingra, and Fish) are measured at multiple depths throughout the year. These parameters include total nitrogen, total dissolved nitrogen, nitrite+nitrate-N, ammonium-N, total phosphorus, total dissolved phosphorus, dissolved reactive phosphorus (only in the southern lakes and not in Wingra and Fish after 2003), bicarbonate-reactive filtered and unfiltered silica (both discontinued in 2003), dissolved reactive silica, pH, air equilibrated pH (discontinued in 2014 in the northern lakes and in 2020 in the southern lakes), total alkalinity, total inorganic carbon, dissolved inorganic carbon, total organic carbon, dissolved organic carbon, and total particulate matter (only in the northern lakes in this data set; total particulate matter in southern lakes starting in 2000 is available in a separate dataset). Sampling Frequency: Northern lakes- monthly during ice-free season - every 5 weeks during ice-covered season. Southern lakes- Southern lakes samples are collected every 2-4 weeks during the summer stratified period, at least monthly during the fall, and typically only once during the winter, depending on ice conditions. Number of sites: 11
DOI: 10.5281/zenodo.7647125
title: Point sample database with spatial holdbacks for global forest edge model training

description: Global point dataset sampling 50 biophysical parameters to train the global forest carbon edge model at https://github.com/springinnovate/carbon_edge_model/releases/tag/1.2.0 Field schema: accessibility_to_cities_2015_30sec_compressed (Integer64)<br> altitude_10sec_compressed (Integer64)<br> baccini_carbon_data_2014_compressed (Integer64)<br> bio_01_30sec_compressed (Real)<br> bio_02_30sec_compressed (Real)<br> bio_03_30sec_compressed (Real)<br> bio_04_30sec_compressed (Real)<br> bio_05_30sec_compressed (Real)<br> bio_06_30sec_compressed (Real)<br> bio_07_30sec_compressed (Real)<br> bio_08_30sec_compressed (Real)<br> bio_09_30sec_compressed (Real)<br> bio_10_30sec_compressed (Real)<br> bio_11_30sec_compressed (Real)<br> bio_12_30sec_compressed (Real)<br> bio_13_30sec_compressed (Real)<br> bio_14_30sec_compressed (Real)<br> bio_15_30sec_compressed (Real)<br> bio_16_30sec_compressed (Real)<br> bio_17_30sec_compressed (Real)<br> bio_18_30sec_compressed (Real)<br> bio_19_30sec_compressed (Real)<br> cec_0-5cm_mean_compressed (Integer64)<br> cec_5-15cm_mean_compressed (Integer64)<br> cfvo_0-5cm_mean_compressed (Integer64)<br> cfvo_5-15cm_mean_compressed (Integer64)<br> clay_0-5cm_mean_compressed (Integer64)<br> clay_5-15cm_mean_compressed (Integer64)<br> fc_stack_hansen_forest_cover2014_compressed (Integer64)<br> gf_0.4_masked_forest_ESACCI-LC-L4-LCCS-Map-300m-P1Y-2014-v2.0.7 (Real)<br> gf_1.45_masked_forest_ESACCI-LC-L4-LCCS-Map-300m-P1Y-2014-v2.0.7 (Real)<br> gf_5.0_fc_stack_hansen_forest_cover2014_compressed (Real)<br> gf_5.0_masked_forest_ESACCI-LC-L4-LCCS-Map-300m-P1Y-2014-v2.0.7 (Real)<br> hillshade_10sec_compressed (Integer64)<br> masked_forest_ESACCI-LC-L4-LCCS-Map-300m-P1Y-2014-v2.0.7 (Integer64)<br> night_lights_10sec_compressed (Real)<br> night_lights_5min_compressed (Real)<br> nitrogen_0-5cm_mean_compressed (Integer64)<br> nitrogen_10sec_compressed (Integer64)<br> nitrogen_5-15cm_mean_compressed (Integer64)<br> phh2o_0-5cm_mean_compressed (Integer64)<br> phh2o_5-15cm_mean_compressed (Integer64)<br> sand_0-5cm_mean_compressed (Integer64)<br> silt_0-5cm_mean_compressed (Integer64)<br> silt_5-15cm_mean_compressed (Integer64)<br> slope_10sec_compressed (Real)<br> soc_0-5cm_mean_compressed (Integer64)<br> soc_5-15cm_mean_compressed (Integer64)<br> tri_10sec_compressed (Real)<br> wind_speed_10sec_compressed (Real)
DOI: 10.5281/zenodo.7647124
title: Point sample database with spatial holdbacks for global forest edge model training

description: Global point dataset sampling 50 biophysical parameters to train the global forest carbon edge model at https://github.com/springinnovate/carbon_edge_model/releases/tag/1.2.0 Field schema: accessibility_to_cities_2015_30sec_compressed (Integer64)<br> altitude_10sec_compressed (Integer64)<br> baccini_carbon_data_2014_compressed (Integer64)<br> bio_01_30sec_compressed (Real)<br> bio_02_30sec_compressed (Real)<br> bio_03_30sec_compressed (Real)<br> bio_04_30sec_compressed (Real)<br> bio_05_30sec_compressed (Real)<br> bio_06_30sec_compressed (Real)<br> bio_07_30sec_compressed (Real)<br> bio_08_30sec_compressed (Real)<br> bio_09_30sec_compressed (Real)<br> bio_10_30sec_compressed (Real)<br> bio_11_30sec_compressed (Real)<br> bio_12_30sec_compressed (Real)<br> bio_13_30sec_compressed (Real)<br> bio_14_30sec_compressed (Real)<br> bio_15_30sec_compressed (Real)<br> bio_16_30sec_compressed (Real)<br> bio_17_30sec_compressed (Real)<br> bio_18_30sec_compressed (Real)<br> bio_19_30sec_compressed (Real)<br> cec_0-5cm_mean_compressed (Integer64)<br> cec_5-15cm_mean_compressed (Integer64)<br> cfvo_0-5cm_mean_compressed (Integer64)<br> cfvo_5-15cm_mean_compressed (Integer64)<br> clay_0-5cm_mean_compressed (Integer64)<br> clay_5-15cm_mean_compressed (Integer64)<br> fc_stack_hansen_forest_cover2014_compressed (Integer64)<br> gf_0.4_masked_forest_ESACCI-LC-L4-LCCS-Map-300m-P1Y-2014-v2.0.7 (Real)<br> gf_1.45_masked_forest_ESACCI-LC-L4-LCCS-Map-300m-P1Y-2014-v2.0.7 (Real)<br> gf_5.0_fc_stack_hansen_forest_cover2014_compressed (Real)<br> gf_5.0_masked_forest_ESACCI-LC-L4-LCCS-Map-300m-P1Y-2014-v2.0.7 (Real)<br> hillshade_10sec_compressed (Integer64)<br> masked_forest_ESACCI-LC-L4-LCCS-Map-300m-P1Y-2014-v2.0.7 (Integer64)<br> night_lights_10sec_compressed (Real)<br> night_lights_5min_compressed (Real)<br> nitrogen_0-5cm_mean_compressed (Integer64)<br> nitrogen_10sec_compressed (Integer64)<br> nitrogen_5-15cm_mean_compressed (Integer64)<br> phh2o_0-5cm_mean_compressed (Integer64)<br> phh2o_5-15cm_mean_compressed (Integer64)<br> sand_0-5cm_mean_compressed (Integer64)<br> silt_0-5cm_mean_compressed (Integer64)<br> silt_5-15cm_mean_compressed (Integer64)<br> slope_10sec_compressed (Real)<br> soc_0-5cm_mean_compressed (Integer64)<br> soc_5-15cm_mean_compressed (Integer64)<br> tri_10sec_compressed (Real)<br> wind_speed_10sec_compressed (Real)