cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dr4j0/2
title: High-Resolution_CallingEffort

description: High resolution calling effort scans of individuals. The first row contains the individual ID (unique 3-colour codes). The second row refers to the night number corresponding to the low-resolution scans(hence the file number). '0' means that those individuals were found outside of the 31 nights when low-resolution scan sampling was conducted. The third row depicts the Sound Pressure Level (SPL). The fourth row contains the starting time of high-resolution calling effort sampling. The following rows contain the calling effort data coded in binary.
DOI: 10.5061/dryad.dr4j0/3
title: CallingSongFeatures

description: 5-syllable chirp duration, 5-syllable chirp period and number of 2-syllable chirps of the P.guttiventris calling song recorded from different individuals.
DOI: 10.5061/dryad.f77k3.1
title: Data from: Selection for mechanical advantage underlies multiple cranial optima in new world leaf-nosed bats
DOI: 10.5061/dryad.f77k3.2/3.2
title: Supplementary Tables and Figures
DOI: 10.5061/dryad.ff853/1
title: SchumannData

description: Dataset-file from Sympathetic nervous system activity and anti-lipolytic response to IV-glucose load in subcutaneous adipose tissue of obese and obese type 2 diabetic subjects
DOI: 10.5061/dryad.gv234/1
title: 24-hour cough recordings

description: All cough recordings that were complete to within 23.5 hours were included here and displayed per participant's treatment day.
DOI: 10.5061/dryad.j0j5k/1
title: Pseudotranscriptomes

description: This archive contains the pseudotranscriptomes and associated files as well as a brief README document describing what each file is, how it was generated, and what it was used for.
DOI: 10.5061/dryad.jb10h/3
title: ECIMAT1 crab ecotype 4mm 9mm by day cw ph simple

description: Lab experiment 1 with marbled shore crabs offered ten snails of 4 mm crab ecotype and ten snails of 9 mm crab ecotype every two days.
DOI: 10.5061/dryad.jb10h/4
title: ECIMAT2 crab wave ecotypes 4mm by day cw ph simple

description: Lab experiment 2 - marbled shore crabs offered ten 4mm wave ecotype and ten 4 mm crab ecotype snails every two days
DOI: 10.5061/dryad.jb10h/5
title: shell length_weight_thickness_morphometrics ver 2

description: Shell measurement, shell weight, shell thickness, gender, maturity, geometric morphometric measurements for natural size range above 3 mm for crab ecotype and wave ecotype.
DOI: 10.5061/dryad.k7057/1
title: Quiz_responses_expt_1

description: Details of each online response that was used in the analysis for Experiment 1. For more information, see readme.txt
DOI: 10.5061/dryad.k7057/2
title: Quiz_responses_expt_2

description: Details of each online response that was used in the analysis for Experiment 2. For more information see readme.txt
DOI: 10.5061/dryad.k7057/3
title: Image_details

description: Details for each of the insect specimens from which the images used in the two experiments were drawn. For more information see readme.txt
DOI: 10.5061/dryad.ss035/1
title: RAD_genos_Kovach_etal_2016

description: The attached .xls file contains genotypes for the 9380 putatively diagnostic SNPs used in Kovach et al. 2016.  Each row is a different individual.  The first column is is population of origin for each individual.  The following columns are genotypes for each locus.  Locus names designate genomic position within the  rainbow trout reference genome (see Hand et al. 2016): chr_chromosome#; chrUn - are loci on unanchored scaffolds; the final number is an identifier. Some RAD contigs have multiple SNPs.  NA is missing data.  At each locus, a 0 is a homozygote for the westslope cutthroat trout alleles, a 1 is a heterozygote (one rainbow trout allele and one westslope cutthroat trout allele) and a 2 is a rainbow trout homozygote.
DOI: 10.5061/dryad.t0m6p/1
title: Foraging dataset
DOI: 10.5061/dryad.t0m6p/2
title: Escape response dataset
DOI: 10.17632/69tnp6tfb3.1
title: Data for: Climatic and palaeoceanographic changes during the Pliensbachian (Early Jurassic) inferred from clay mineralogy and stable isotope (C-O) geochemistry (NW Europe)

description: Files about clay mineralogy and geochemistry
DOI: 10.5061/dryad.04s6s/1
title: Ankle Brachial Index Plos One

description: Data file has two pages. 1Read_me contains an explanation about the data. Hoja2 contains data with self-explanatory titles.
DOI: 10.5061/dryad.11nr8/1
title: Bell-Dereske et al Oikos data

description: Data from field collected litter, decomposition bags, and stock plants.
DOI: 10.5061/dryad.1756f/1
title: Meta-analysis data of cover crop and tillage effects on AMF colonization rates

description: These data were extracted from publications listed in the supplemental data associated with the manuscript. The data include the rate of arbuscular mycorrhizal colonization on cash crop roots in field experiments comparing either cover cropping vs. fallow or intensive tillage vs. alternative tillage. They also contain other attributes of the studies that were used as moderator variables in the meta-analysis. See the methods section of the manuscript for how missing standard deviations were imputed.
DOI: 10.5061/dryad.2nd84/1
title: Urbach_and_Ausubel_PNAS_2017_20170104

description: Scripts and data files associated with Urbach and Ausubel PNAS 2017
DOI: 10.5061/dryad.3qq01/2
title: Unique_IT_RUN27_WTBCPool2_trnLc68_47R
DOI: 10.5061/dryad.4t3r6/1
title: Martin et al. Functional Ecology

description: Functional leaf trait data for Coffea arabica (var. Caturra).
DOI: 10.5061/dryad.5615g/1
title: microsat_data_for_dryad
DOI: 10.5061/dryad.5615g/2
title: endosymbiont_data_for_dryad
DOI: 10.5061/dryad.61pd6.2
title: Data from: A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny
DOI: 10.5061/dryad.61pd6.2/1.2
title: Aligned matK matrix

description: Supplemental Data: Data File A.  The aligned matK DNA sequence matrix of 3,744 legume sequences and 100 outgroup taxa spanning core Eudicots. Nexus format.
DOI: 10.5061/dryad.61pd6.2/10.2
title: High Resolution Poster illustrating the new LPWG Legume Classification

description: Supplemental Data: Figure S3.  Schematic diagram illustrating the six new subfamilies of Leguminosae and their floral diversity.
DOI: 10.5061/dryad.61pd6.2/2.2
title: Bayesian Majority Rule Phylobayes Consensus Tree

description: Supplemental Data: Data File B.  Bayesian phylogenetic consensus tree (newick format) resulting from a PhyloBayes analysis of matK DNA sequences for 3,744 legume sequences and 100 outgroup taxa.
DOI: 10.5061/dryad.61pd6.2/3.2
title: Bootstrap Majority-rule RAxML Consensus Tree

description: Supplemental Data: Data File C.  Bootstrap consensus tree, based on 1000 replicates (newick format) resulting from the RAxML analysis of matK DNA sequences for 3,744 legume sequences and 100 outgroup taxa.
DOI: 10.5061/dryad.61pd6.2/4.2
title: Best-scoring Maximum Likelihood RAxML Tree

description: Supplemental Data: Data File D.  Best-scoring Maximum Likelihood tree (newick format) resulting from the RAxML phylogenetic analysis of matK DNA sequences for 3,744 legume sequences and 100 outgroup taxa.
DOI: 10.5061/dryad.61pd6.2/7.2
title: Voucher information for LPWG matK sequences

description: Supplemental Data:  Table S1. Voucher information and GenBank numbers for all accessions included in the phylogenetic analyses of matK gene sequences.  Specimens identified with an asterisk (*) are included in the phylogenetic analyses presented in Fig. 1 and in Supplemental Data Fig. S1.  The remaining sequences are not included in the final analyses but are listed here to indicate that they were validated by LPWG. A total of 5,560 legume sequences were verified.  Phylogenetic analyses of all sequences listed allowed us to ascertain that the sequences are of good quality, properly identified taxonomically, and that they are not contaminants.
DOI: 10.5061/dryad.61pd6.2/8.2
title: RAxML Bootstrap Consensus Phylogenetic Tree

description: Supplemental Data: Figure S1.  Phylogeny of Leguminosae based on a RAxML analysis of 3,844 matK sequences representing 3,696 of the c. 19,500 species and 698 of the 765 genera of the family, including 100 outgroup taxa (uncoloured) spanning core Eudicots. Branch lengths are proportional to numbers of matK substitutions. All subfamilies are supported with 100% bootstrap. The phylogenetic tree can be visualised (e.g., with FigTree (http://tree.bio.ed.ac.uk/software/figtree/) or Dendroscope (http://dendroscope.org/; Huson & Scornavacca, 2012), and downloaded from Supplemental Data: Data file C.
DOI: 10.5061/dryad.61pd6.2/9.2
title: Poster illustrating the new LPWG Legume Classification

description: Supplemental Data: Figure S2.  Schematic diagram illustrating the six new subfamilies of Leguminosae and their floral diversity.
DOI: 10.5061/dryad.6k62p/1
title: Bauer_SupplementalData1

description: Supplemental Data 1. Brief character definitions and character states outlined. Numbers in first column refer to numbers utilized in the character matrix found in Supplemental Data 2. Internal character data denoted by an asterisk.
DOI: 10.5061/dryad.6k62p/2
title: Bauer_SupplementalData2

description: Supplemental Data 2. Character matrix for the anatomically modeled species and several related taxa. Character number refer to the list of characters found in Supplemental Data 1. Outgroup species is denoted by an asterisk.
DOI: 10.5061/dryad.6k62p/3
title: Bauer_SupplementalData3

description: Supplemental Data 3. Raw scanned peel data that were used in the reconstruction process for Cryptoblastus melo.
DOI: 10.5061/dryad.6k62p/4
title: Bauer_SupplementalData4

description: Supplemental Data 4. Raw scanned peel data that were used in the reconstruction process for Deltoblastus permicus.
DOI: 10.5061/dryad.6k62p/5
title: Bauer_SupplementalData5

description: Supplemental Data 5. Raw scanned peel data that were used in the reconstruction process for Diploblastus glaber.
DOI: 10.5061/dryad.6k62p/6
title: Bauer_SupplementalData6

description: Supplemental Data 6. Raw scanned peel data that were used in the reconstruction process for Ellipicoblastus elliptica.
DOI: 10.5061/dryad.6k62p/7
title: Bauer_SupplementalData7

description: Supplemental Data 7. Raw scanned peel data that were used in the reconstruction process for Monoschizoblastus rofei.
DOI: 10.5061/dryad.6k62p/8
title: Bauer_SupplementalData8

description: Supplemental Data 8. Raw scanned peel data that were used in the reconstruction process for Pentremites godoni.
DOI: 10.5061/dryad.7ck7r.3
title: Data from: The last bastion? X chromosome genotyping of Anopheles gambiae species pair males from a hybrid zone reveals complex recombination within the major candidate ‘genomic island of speciation’
DOI: 10.5061/dryad.7ck7r.3/1.3
title: Caputo et al 2016 Data S1

description: Information on the two Sequenom iPLEX® multiplexes used to genotype the X-centromeric region of An.gambiae and An.coluzzii specimens from Guinea Bissau and Burkina Faso as described in the paper. The two iPLEX assays were designed to genotype a total of 35 X-pericentromeric species-specific SNPs, yielding a density of 1 SNP per 0.12 Mb across the 4 Mb region targeted.
DOI: 10.5061/dryad.7ck7r.3/2.3
title: Caputo et al 2016 Data S2

description: Genotyping results obtained for 61 males from Guinea Bissau (Safim) and 33 males from Burkina Faso which were Illumina -genotyped  at 711 SNPs (43 on chromosome-X; 411 on chromosome-2; 257 on chromosome-3) as described in the paper.
DOI: 10.5061/dryad.7r24c/1
title: ETC file for Dryad

description: Raw data for life span and ETC activity
DOI: 10.5061/dryad.8m3t6/12
title: Raw_Illumina_Data_12

description: Raw_Illumina_Data_12
DOI: 10.5061/dryad.8m3t6/13
title: Raw_Illumina_Data_13

description: Raw_Illumina_Data_13
DOI: 10.5061/dryad.8m3t6/14
title: Raw_Illumina_Data_14

description: Raw_Illumina_Data_14
DOI: 10.5061/dryad.8m3t6/15
title: Raw_Illumina_Data_15

description: Raw_Illumina_Data_15
DOI: 10.5061/dryad.8m3t6/16
title: Raw_Illumina_Data_16

description: Raw_Illumina_Data_16
DOI: 10.5061/dryad.8m3t6/17
title: Reference_plasmid_sequences

description: Reference_plasmid_sequences
DOI: 10.5061/dryad.8m3t6/18
title: Sample_list

description: List_of_raw_illumina_data
DOI: 10.5061/dryad.8tk26/2
title: Sample Blot 2
DOI: 10.5061/dryad.8tk26/3
title: Sample Blot 3
DOI: 10.5061/dryad.8tk26/4
title: Raw data in Excel Table
DOI: 10.5061/dryad.8tk26/5
title: Analytical characteristics of the in house ELISA methods

description: Analytical characteristics of the in house ELISA methods – Table Legend

CoH – fKLC Freelite high control; CoL – fKLC Freelite low control; CSF1, CSF2, CSF3 – pooled CSF samples; S1, S2, S3 – pooled serum samples; 1/10, 1/100, 1/250 – pooled CSF dilutions. Pooled sera as well as Freelite controls were diluted 1/1000. SD – standard deviation; CV % – coefficient of variation. Flebogamma 40 mg/L was added to test maximal theoretical cross-reaction with light chains bound in the IgG. There is, however, no information available whether intravenous immunoglobulin preparations may contain traces of free light chains.
Please note that in Method D, sample S1 was out of the calibration range of the fLLC assay.
Estimated bias is only provided for method E since there is no internationally recognized standard for fLC; hence, Freelite controls were presumed to give the indicated concentrations only in conjunction with Freelite calibrators.
Recovery assays: One of the pooled CSFs and sera was spiked with 10% (vol/vol) of either Bethyl purified monoclonal fLC or Freelite standards to obtain the theoretical concentration indicated (i.e., B16 corresponds to the final concentration of 16 ug/L in the sample). The expected concentration was then calculated as the final theoretical concentration + 0.9 * concentration measured in the non-spiked sample within the same analytical run. Recovery was calculated as 100 * (measured concentration – expected concentration)/expected concentration.
DOI: 10.5061/dryad.8tk26/6
title: FLC SPA preanalytics

description: 11 CSF samples were divided in two aliquots; one was frozen to -30°C immediately upon receipt (A), the second was stored at +2 to +8°C for exactly 7 days and frozen thereafter. All samples were then analysed for free light chains within the same analytical run using the Freelite assay on SPA PLUS analyser.
DOI: 10.5061/dryad.8tk26/7
title: fKLC preanalytics

description: 11 CSF samples were divided into two aliquots and frozen either immediately (A) or after 7 days at +2°C to +8°C (B). Only marginal, albeit statistically significant, decrease of fKLC concentrations has been found in (B).
DOI: 10.5061/dryad.8tk26/8
title: fLLC preanalytics

description: 11 CSF samples were divided into two aliquots and frozen either immediately (A) or after 7 days at +2°C to +8°C (B). No changes of fLLC concentrations have been observed in (B).
DOI: 10.5061/dryad.gv234/2
title: Daily report of cough and sputum results

description: Daily results per participant's treatment day are reported here for cough recordings and sputum samples.
DOI: 10.5061/dryad.gv234/3
title: Hourly report of cough recordings

description: Hourly report of all cough recordings per participant's treatment day are shown here.
DOI: 10.5061/dryad.gv234/4
title: Overview of participants

description: Data for HIV-negative participants with culture-proven drug-susceptible tuberculosis are reported here.
DOI: 10.5061/dryad.hj57p/1
title: Data and analysis from Food-sharing vampire bats are more nepotistic under conditions of perceived risk

description: This is an R script that replicates the analyses in the paper. The data are explained and embedded within the script. It can also be read as a .txt file.
DOI: 10.5061/dryad.j92h4/1
title: Female_redback_data

description: This dataset corresponds to the data we collected and used to test for the effect of the cannibalistic treatment on female fecundity.
DOI: 10.5061/dryad.j92h4/2
title: Receptivity_redback_data

description: This dataset corresponds to the data we collected from our mating trials.
DOI: 10.5061/dryad.j92h4/3
title: Survival_redback_data

description: This dataset corresponds to the data we collected and used to test for the effect of cannibalism and offspring diet quality on offspring survival.
DOI: 10.5061/dryad.j92h4/4
title: Growth_redback_data

description: This dataset corresponds to the data we collected and used to test for the effect of cannibalism and offspring diet quality on offspring growth.
DOI: 10.5061/dryad.m065n/1
title: Pollinator_data

description: variables and their coding are in the ReadMe file
DOI: 10.5061/dryad.m31r8/1
title: Teste et al. Science PSF-Survival-Biomass

description: Plant survival and biomass data.
DOI: 10.5061/dryad.m31r8/2
title: Teste et al. Science PSF-RootStrategyOccupancy

description: Root strategy occupancy (nodule, cluster roots, ectomycorrhizal and arbuscular mycorrhizal colonization levels) data
DOI: 10.5061/dryad.n5j54/1
title: Finemapping Genotype and Phenotype

description: Genotype and phenotype data from 45 RC-NILs and 2 NI-RILs used in fine-mapping etb1.2
DOI: 10.5061/dryad.n5j54/2
title: Interaction Phenotype and Expression

description: Phenotype and expression data from 20 NI-RILs used for testing interactions between ZmYAB2.1 and tb1
DOI: 10.5061/dryad.n5j54/3
title: ZmYAB2.1 Expression

description: Expression data for ZmYAB2.1
DOI: 10.5061/dryad.nt890/1
title: AbovegroundBiomass_2015

description: Aboveground Biomass harvested at end of growing season in each plot.
DOI: 10.5061/dryad.nt890/2
title: BelowgroundBiomass_2015

description: Belowground biomass harvested from each plot at end of growing season 2015.
DOI: 10.5061/dryad.pq84q/1
title: Sea-level rise experiment plant cover data

description: Raw plant cover data collected from experimental sea-level rise plots from spring 2013 through fall 2015. Readme has description of species and other data codes.
DOI: 10.5061/dryad.pq84q/2
title: Salinity data

description: Salinity data for experimental sea-level rise plots from spring 2013 through fall 2015. Column names described in Readme file.
DOI: 10.5061/dryad.18gt9/1
title: Experimental data for Cuco et al.

description: Excel file with data from two experimental steps: first, we tested the effect of each contaminant (copper sulphate or tebuconazole) in the presence or absence of the microparasitic yeast (Metschnikowia bicuspidata) in two host clones (Daphnia spp., clones 12 and 47); second, we tested the effect of increasing the number or parasite challenge (from one to two) on the response of the host-parasite system to tebuconazole (follow-up experiment). Data represent life history records of individual Daphnia (except for per capita rate of increase, where jack-knife pseudo-values are shown).
DOI: 10.5061/dryad.1v035/1
title: Data Carbonell et al

description: Compressed file containing 7 archives: environmental and biological data from invaded and non-invaded areas (original dataset); environmental and biological data from invaded area (to be used for data analysis along with the R script); environmental and biological data from non-invaded area (to be used for data analysis along with the R script); physiological and biological traits of corixids and their categories (to be used for data analysis along with the R script); affinity values of species for each trait category (to be used for data analysis along with the R script), physiological and biological traits of corixids and their categories (original dataset); document with detailed archives description.
DOI: 10.5061/dryad.36rm1/1
title: Additional File 1 - IBS and IBD matrices

description: This file contains all genotype scores of the identity-by-state (IBS) and identity-by-descent (IBD) genotype matrices.

Polymorphic SNP alleles originating from Barke or the wild barley donors of the NAM population HEB-25 are easily distinguishable by state. Based on the Barke reference genotype, the wild barley allele can be specified in each segregating family. To setup the IBS matrix the state of the homozygous Barke allele was coded as 0, while HEB lines that showed a homozygous wild barley genotype were assigned a value of 2. Consequently, heterozygous HEB lines were assigned a value of 1. If a SNP was monomorphic in one HEB family but polymorphic in a second family, lines of the first HEB family were assigned a genotype value of 0, since their state is not different from the Barke allele. Gaps resulting from missing genotypes (0.6% of all data points) were filled with the mean of polymorphic flanking markers, based on the map of Maurer et al. (2015). This way a complete genotype data set (IBS) was retained, which is required to carry out the following multiple regression GWAS. 

To convert the IBS matrix into an IBD matrix we first replaced each marker value that was monomorphic in a HEB family by an empty value. Then, the resulting gaps (44.9% of all data points) were filled with the mean of the next polymorphic flanking markers of this gap. This way we can distinguish whether the allele is inherited from the recurrent parent Barke or a wild donor across the whole NAM population. The newly assigned IBD value reflects the marker’s probability of being inherited from the wild barley donor.
DOI: 10.5061/dryad.36rm1/2
title: Additional File 2 - All phenotype data

description: This file contains all phenotype data that were used for GWAS. Trait values are shown as BLUEs.
DOI: 10.5061/dryad.36rm1/3
title: Additional File 3 - All significant markers and effect estimates

description: This file contains all significant markers and their effect estimates obtained by two different GWAS models (IBS-M and IBD-MxF).
DOI: 10.5061/dryad.36rm1/4
title: Additional File 4 - Markers in complete LD

description: This file contains a list of all 305 SNP markers that are in complete LD to another marker and, thus, have been excluded from our study.
DOI: 10.5061/dryad.36rm1/5
title: Additional File 5 - iSelect marker names

description: File containing a translation for the marker names used in Maurer et al. and the official iSelect marker names.
DOI: 10.5061/dryad.3qq01/10
title: Unique_IT_Run27_WTBCPool10_trnLc66_48R
DOI: 10.5061/dryad.3qq01/11
title: Unique_IT_Run27_WTBCPool11_trnLc68_48R
DOI: 10.5061/dryad.3qq01/3
title: Unique_IT_Run27_WTBCPool3_trnLc69_47R
DOI: 10.5061/dryad.3qq01/4
title: Unique_IT_Run27_WTBCPool4_trnLc70_47R
DOI: 10.5061/dryad.3qq01/5
title: Unique_IT_Run27_WTBCPool5_trnLc61_48R
DOI: 10.5061/dryad.3qq01/6
title: Unique_IT_Run27_WTBCPool6_trnLc62_48R
DOI: 10.5061/dryad.3qq01/7
title: Unique_IT_Run27_WTBCPool7_trnLc63_48R
DOI: 10.5061/dryad.3qq01/8
title: Unique_IT_Run27_WTBCPool8_trnLc64_48R
DOI: 10.5061/dryad.3qq01/9
title: Unique_IT_Run27_WTBCPool9_trnLc65_48R
DOI: 10.5061/dryad.3t8t4/1
title: Experimental host accepance data

description: This compressed directory contains the csv data files from the host acceptance experiments. Data from the lifetime host acceptance assays are labelled with the generation number and host. These include columns with the line number, subline (R=reverted, NR=not reverted) and number of eggs laid. The SINGLESEEDASSAY.csv file contains the data from the short term assay. Here columns give the line, subline, host, and counts for the number of beetles that laid (LAID?=Y) versus didn't lay (LAID?=N) an egg during the assay.
DOI: 10.5061/dryad.3t8t4/2
title: R script for liftetime fecundity assays

description: This R script contains the code used to conduct the Bayesian analyses of lifetime fecundity. It requires JAGS and rjags.
DOI: 10.5061/dryad.3t8t4/3
title: R script for single seed assays

description: This R script contains the code used to conduct the Bayesian analyses of short-term host acceptance. It requires JAGS and rjags.
DOI: 10.5061/dryad.3t8t4/4
title: JAGS model, lifetime fecundity

description: JAGS model block for the lifetime fecundity analyses.
DOI: 10.5061/dryad.3t8t4/5
title: JAGS model, short-term host acceptance

description: JAGS model block for the short-term host acceptance analyses.
DOI: 10.5061/dryad.61pd6.1
title: Data from: A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny