cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.90ps4/1
title: Raw images
DOI: 10.5061/dryad.9pf75/41
title: additional_samples/Memory_I_raw.hdf

description: Sample based data set for Memory I experiment
DOI: 10.5061/dryad.9pf75/42
title: additional_samples/Memory_II_raw.hdf

description: Sample based data set for Memory II experiment
DOI: 10.5061/dryad.9pf75/43
title: additional_samples/Monocular_raw.hdf

description: Sample based data set for Monocular experiment
DOI: 10.5061/dryad.9pf75/44
title: additional_samples/Patch_raw.hdf

description: Sample based data set for Patch experiment
DOI: 10.5061/dryad.9pf75/45
title: additional_samples/Scaled_raw.hdf

description: Sample based data set for Scaled experiment
DOI: 10.5061/dryad.9pf75/46
title: additional_samples/Tactile_raw.hdf

description: Sample based data set for Tactile experiment
DOI: 10.5061/dryad.9pf75/47
title: additional_samples/Webtask_at_School_raw.hdf

description: Sample based data set for Webtask @ School experiment
DOI: 10.5061/dryad.9pf75/56
title: Eye Tracking Training Course

description: Description of the training course for new operators at the University of Osnabrück.
DOI: 10.5061/dryad.d28j8.1
title: Data from: Ecophysiological limits to aerobic metabolism in hypoxia determine epibenthic distributions and energy sequestration in the northeast Pacific ocean
DOI: 10.5061/dryad.d28j8.2/1.2
title: CHONe_EF-13_ChuJ_Data_LnO2016

description: Data are from lab-based respirometry experiments designed to measure metabolic rates (oxygen consumption) and critical oxygen tensions (O2crit or Pcrit) for slender sole, spot prawn, and squat lobster. Data was collected as part of a PhD thesis (J.W.F. Chu).
DOI: 10.5061/dryad.d930g/1
title: Datasets used all analysis

description: The all copulation sheet showed a fundamental data in all experiments. The Spermatophore sheet was used for analyzing the homogeneity of sperm mass area. The Each experiment sheet was used for analyzing the relationship between male traits and Sperm competition and cryptic female choice. The Paternity sheet was used for paternity analysis.
DOI: 10.5061/dryad.h966b/1
title: Genotypes of field-collected Mimulus guttatus from Iron Mountain and Cone Peak, OR, USA

description: Field-collected Mimulus guttatus plants from Iron Mountain (IM; N=48) and Cone Peak (CP; N=39) populations in the Oregon Cascades, USA, were genotyped at 20 length-polymorphic exon-primed nuclear markers. Population and plant identifiers are listed in column A. Diploid genotypes for each marker are indicated in columns B-U as four digit numbers, two digits denoting each allele ID number ranging from 01-13. information on marker location and primer sequences are found in Supplementary Tables S1 and S2.
DOI: 10.5061/dryad.mc04d/1
title: Unfiltered Hapmap

description: This file contains the raw, unfiltered hapmap from GBS. Individuals are identified as: MB - Mantoloking Basin, MC - Mantoloking Creek, MP - Mantoloking Pond, RB - Rutgers Basin, RC - Rutgers Creek, RP - Rutgers Pond, SB - Stone Harbor Basin, SC - Stone Harbor Creek, SP - Stone Harbor Pond
DOI: 10.5061/dryad.mc04d/2
title: Final Hapmap

description: Hapmap of SNPs used in final analyses. SNPs have been filtered to include 30% of all taxa, 80% of all sites, and a 5% minimum allele frequency. SNPs in significant LD (p &lt; 0.01) have also been removed. Individuals are identified as: MB
- Mantoloking Basin, MC - Mantoloking Creek, MP - Mantoloking Pond, RB - Rutgers Basin, RC
- Rutgers Creek, RP - Rutgers Pond, SB - Stone Harbor Basin, SC - Stone Harbor Creek, SP -
Stone Harbor Pond
DOI: 10.5061/dryad.mc04d/3
title: Filtered Hapmap

description: Hapmap of SNPs after initial filtering. SNPs have been filtered to include 30% of all taxa, 80% of all sites. Individuals are identified as: MB - Mantoloking Basin, MC - Mantoloking Creek, MP - Mantoloking Pond, RB - Rutgers Basin, RC - Rutgers Creek, RP - Rutgers Pond, SB - Stone Harbor Basin, SC - Stone Harbor Creek, SP - Stone Harbor Pond
DOI: 10.5061/dryad.mk860/1
title: Pmaximus_Microsatellite_genotypes

description: The file contains data for 180 samples of great scallop (Pecten maximus) genotyped at 13 microsatellite loci. These samples where collected from nine locations along the coast of Northern Ireland.
DOI: 10.5061/dryad.nb41c/1
title: Raw data, scripts and model code

description: Archive containing MATLAB analysis .m code, code for computational model, and raw .mat data. Please read the associated readme file.
DOI: 10.5061/dryad.ps383/1
title: DRYAD_Hypervolumes_9_24_2016_JMP
DOI: 10.5061/dryad.qk58h/1
title: Appendix A Final (Replication Principle)

description: Replication principle for species diversity and phylogenetic diversity
DOI: 10.5061/dryad.qk58h/2
title: Appendix B Final (Extrapolation)

description: Extrapolation formulas for phylogenetic diversity
DOI: 10.5061/dryad.qk58h/3
title: Appendix C Final (Simulation Studies)

description: Using simulation to test the proposed methods
DOI: 10.5061/dryad.qk58h/4
title: Appendix D Final (BacterialData)

description: The 16S rRNA sequence bacterial biota data and phylogenetic tree from the human distal esophagus
DOI: 10.5061/dryad.qk58h/6
title: Appendix F Final (Comparison)

description: Comparison of rarefaction/extrapolation sampling curves for species diversity and phylogenetic diversity
DOI: 10.5061/dryad.r5gg0/1
title: Mendonça et al Plos One 2016

description: Data from experiment on audiovisual distance perception. Data from 6 subjects, identified by letters, and 6 sessions, numbered. Each row is a trial. 1st column: where in distance V stimulus was; 2nd column: where in distance A stimulus was; 3rd column: where is distance subject perceived the V stimulus; 4th column: where in distance subject perceived A stimulus.
DOI: 10.5061/dryad.r754h/1
title: PilakoutaSmiseth2016ProceedingsB

description: Raw data on the fitness of outbred and inbred offspring raised by either a large female or a small female in the burying beetle Nicrophorus vespilloides.
DOI: 10.5061/dryad.s058r/1
title: Goetze_et_al_2016: Population genetic data for Atlantic plankton
DOI: 10.5061/dryad.s24b9/1
title: F1 mate preference dataset

description: Combined data set of F1 mate preference experiment. Sheet #1 ("Key") details the contents of the data found in sheet #2.
DOI: 10.5061/dryad.sk76g/1
title: Vegetation aboveground biomass

description: Field data obtained from aboveground biomass assessment across the 12 plant communities under study throughout the 5 years of study.
DOI: 10.5061/dryad.sk76g/2
title: Soil water content dynamics

description: Field data obtained from soil water monitoring using capacitance moisture probes across the 12 plant communities under study throughout the 5 years of study.
DOI: 10.5061/dryad.t5r8m/1
title: GenomeSequencedataofmutant
DOI: 10.5061/dryad.vs1r0/1
title: Slaughter Beach Temperature Logger Data

description: Continuous temperature logger data (°C, ±0.5°) collected every hour from May 8 to June 27, 2012 at Slaughter Beach, DE. Data were collected at two tidal heights (extreme high and high) and two sediment depths (5 cm and 20 cm below the surface).
DOI: 10.5061/dryad.vs1r0/2
title: Embryo Cross-Sectional Area Data

description: Limulus polyphemus embryo cross sectional area (mm) measured for 36 treatment combinations of temperature, salinity and oxygen, every 2 days over a 28 day period.
DOI: 10.17632/ggh75fd25f.2
title: Loay & Safa Dataset

description: The goal of this project is to provide large availability of textual data in electronic form. In order to test system performance such as retrieval systems, search engine, plagiarism checking systems… etc. Hence, we collect data from papers, books and articles with the possibility of recurrence of the file content and the size of files ranging within [1KB-20,374KB]. The overall size of the “Raw Dataset” are formed 4.64GB. This dataset also provide “Modified Dataset” after lexical analysis to analyze the input file and extract words that contain only English alphabet characters. Because this files were took from many resources (For each word check each letter for handling some situations such as (we ’re → we are, don’t → do not, bi-cycle → bicycle, B.S. → BS and up/down → up down). Despite our best efforts to clean this dataset, it contains a very small percentage of non-English words and non-words. No automatic spelling correction was performed. The size of the resulted data will be 4.27GB with filtering of the resulted files for passing only non-empty files. Note: the raw dataset contains a text file that may contain (English alphabet, other symbols, non-printable character, and numbers). Last Update: November, 2016.
DOI: 10.5061/dryad.01c3t/15
title: vas.tpm.plus.ncRNA

description: Vas deferens matches to the ncRNA Database.
DOI: 10.5061/dryad.01c3t/16
title: testes.tpm.plus.ncRNA

description: Testes matches to the ncRNA Database.
DOI: 10.5061/dryad.01c3t/17
title: epi.tpm.plus.tcdb

description: Epididymis matches to the Transporter Classification Database.
DOI: 10.5061/dryad.01c3t/18
title: testes.tpm.plus.tcdb

description: Testes matches to the Transporter Classification Database.
DOI: 10.5061/dryad.01c3t/19
title: vas.tpm.plus.tcdb

description: Vas deferens matches to the Transporter Classification Database.
DOI: 10.5061/dryad.01c3t/20
title: kallisto epi

description: Kallisto generated counts of expression for epididymis reads mapped to the annotated reproductive transcriptome.
DOI: 10.5061/dryad.01c3t/21
title: kallisto testes

description: Kallisto generated counts of expression for testes reads mapped to the annotated reproductive transcriptome.
DOI: 10.5061/dryad.01c3t/22
title: kallisto vas

description: Kallisto generated counts of expression for vas deferens reads mapped to the annotated reproductive transcriptome.
DOI: 10.5061/dryad.1n6c4/1
title: LDL-c and NAFLD in the non-obese population

description: data about NAFLD within the normal LDL-c range in non-obese subjects in cross-sectional and longitudinal population from 2010 to 2014.
DOI: 10.5061/dryad.255hj/11
title: Whole gene pairwise FST

description: This is the pairwise fst output for every gene (bases were subsampled to a uniform coverage of 30) for six populations of Lasallia pustulata along an elevational cline.
The columns are: 
 col1: gene name
 col2: mean position of the sliding window
 col3: number of polymorphic SNPs in the gene
 col4: fraction of the window covered (not informative because coverage was fixed to 30)
 col5: mean coverage at SNP over all four populations (subsampled to a uniform coverage of 30)
 col6: pairwise Fst for Population 1:Population 2
 ...
 col20: pairwise Fst for Population 5:Population 6
 
Used populations and abbreviations:
1 =&gt; Population 1, 176 m a.s.l.
2 =&gt; Population 2, 297 m a.s.l.
3 =&gt; Population 3, 588 m a.s.l.
4 =&gt; Population 4, 842 m a.s.l.
5 =&gt; Population 5, 1,125 m a.s.l.
6 =&gt; Population 6, 1,303 m a.s.l.
DOI: 10.5061/dryad.255hj/12
title: Pairwise FST for six L. pustulata populations

description: This is the pairwise fst output for all polymorphic individual SNPs (subsampled to a uniform coverage of 30) for six populations of Lasallia pustulata along an elevational cline.
 
The columns are: 
 col1: scaffold name
 col2: SNP position on scaffold
 col3: number of SNPs in window (for individual SNP estimates window size was set to 1, therefore all values are 1)
 col4: fraction of the window covered (all values are 1)
 col5: mean coverage at SNP over all four populations (subsampled to a uniform coverage of 30)
 col6: pairwise Fst for Population 1:Population 2
 ...
 col20: pairwise Fst for Population 5:Population 6
 
Used populations and abbreviations: 
1 =&gt; Population 1, 176 m a.s.l.
2 =&gt; Population 2, 297 m a.s.l.
3 =&gt; Population 3, 588 m a.s.l.
4 =&gt; Population 4, 842 m a.s.l.
5 =&gt; Population 5, 1,125 m a.s.l.
6 =&gt; Population 6, 1,303 m a.s.l.

Fst values of 0.000000000 indicate not polymorphic SNPs for a given pairwise comparison.
DOI: 10.5061/dryad.255hj/13
title: Pairwise whole-gene FST (upper 5% tail of the FST distribution)

description: This is the pairwise fst output for the 2,413 genes (bases were subsampled to a uniform coverage of 30) falling into the upper 5% tail of the FST distribution for six populations of Lasallia pustulata along an elevational cline.
The columns are: 
 col1: gene name
 col2: mean position of the sliding window
 col3: number of polymorphic SNPs in the gene
 col4: fraction of the window covered (not informative because coverage was fixed to 30)
 col5: mean coverage at SNP over all four populations (subsampled to a uniform coverage of 30)
 col6: pairwise Fst for Population 1:Population 2
 ...
 col20: pairwise Fst for Population 5:Population 6
 
Used populations and abbreviations:
1 =&gt; Population 1, 176 m a.s.l.
2 =&gt; Population 2, 297 m a.s.l.
3 =&gt; Population 3, 588 m a.s.l.
4 =&gt; Population 4, 842 m a.s.l.
5 =&gt; Population 5, 1,125 m a.s.l.
6 =&gt; Population 6, 1,303 m a.s.l.
DOI: 10.5061/dryad.255hj/14
title: Allele coverage counts for all L. pustulata SNPs

description: We provide here the Sync file of allele coverage counts for 37,225,382 called SNPs from six populations of Lasallia pustulata along an elevation gradient (for format specification see Kofler et al., PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics 2011;27:3435-3436).

Used populations and abbreviations:
1 =&gt; Population 1, 176 m a.s.l.
2 =&gt; Population 2, 297 m a.s.l.
3 =&gt; Population 3, 588 m a.s.l.
4 =&gt; Population 4, 842 m a.s.l.
5 =&gt; Population 5, 1,125 m a.s.l.
6 =&gt; Population 6, 1,303 m a.s.l.

Output of the Sync file:

col1: scaffold number
col2: SNP position on scaffold
col3: reference character
col4: allele frequencies of population number 1
col5: allele frequencies of population number 2
coln: allele frequencies of population number n

The allele frequencies are in the format A:T:C:G:N:del, i.e: count of bases 'A', count of bases 'T', etc., and deletion count in the end.
DOI: 10.5061/dryad.255hj/15
title: Pairwise individual SNP FST (upper 0.5% tail of the FST distribution)

description: This is the pairwise fst output for the 30,571 individual SNPs (subsampled to a uniform coverage of 30) falling into the upper 0.5% tail of the FST distribution for six populations of Lasallia pustulata along an elevational cline.
 
The columns are: 
 col1: scaffold name
 col2: SNP position on scaffold
 col3: number of SNPs in window (for individual SNP estimates window size was set to 1, therefore all values are 1)
 col4: fraction of the window covered (all values are 1)
 col5: mean coverage at SNP over all four populations (subsampled to a uniform coverage of 30)
 col6: pairwise Fst for Population 1:Population 2
 ...
 col20: pairwise Fst for Population 5:Population 6
 
Used populations and abbreviations: 
1 =&gt; Population 1, 176 m a.s.l.
2 =&gt; Population 2, 297 m a.s.l.
3 =&gt; Population 3, 588 m a.s.l.
4 =&gt; Population 4, 842 m a.s.l.
5 =&gt; Population 5, 1,125 m a.s.l.
6 =&gt; Population 6, 1,303 m a.s.l.

Fst values of 0.000000000 indicate not polymorphic SNPs for a given pairwise comparison.
DOI: 10.5061/dryad.255hj/16
title: Top 1% Bayenv2.0 SNPs allele coverage counts

description: We provide here the Sync file of allele coverage counts for the top 1% (Z score) Bayenv2.0 SNPs. 
Used populations and abbreviations:
1 =&gt; Population 1, 176 m a.s.l.
2 =&gt; Population 2, 297 m a.s.l.
3 =&gt; Population 3, 588 m a.s.l.
4 =&gt; Population 4, 842 m a.s.l.
5 =&gt; Population 5, 1,125 m a.s.l.
6 =&gt; Population 6, 1,303 m a.s.l.

Output of the Sync file (for format specification see Kofler et al., PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics 2011;27:3435-3436):

col1: scaffold number
col2: SNP position on scaffold
col3: reference character
col4: allele frequencies of population number 1
col5: allele frequencies of population number 2
coln: allele frequencies of population number n

The allele frequencies are in the format A:T:C:G:N:del, i.e: count of bases 'A', count of bases 'T', etc. , and deletion count in the end.
DOI: 10.5061/dryad.29g1b/1
title: Haplotype frequencies of Steno bredanensis in the Central Pacific Ocean

description: Haplotype frequencies of Steno bredanensis in the Central Pacific Ocean. The islands where data was collected include Kauai, Hawaii, Oahu, Northwest Hawaiian Islands, Moorea, Raiatea (French Polynesia), Savaii, Upolo, Tutuila. The 23 haplotype sequences are available on Genbank.
DOI: 10.5061/dryad.2vk77/1
title: rodent_dispersal

description: Seed tracking experiment data. plot - site identifier; station - seed station ID; seed - acorn ID; weight - acorn mass; harvest - binomial variable, acorn harvested (1) or not (0); similar with columns: removed, found, eaten, cached, surface (i.e. found on surface); distance - removal distance [cm]
DOI: 10.5061/dryad.2vk77/2
title: weevil_abund

description: Weevil abundance dataset (no. of weevil larvae per acorns, divided into bottom and apical part of the acorn). year - year of the data collection; treat - tree ID; treat - nitrogen treatment (con - control, ln - low N, hn - high N); weight - acorn mass; height and width - acorn dimensions; part - acorn part (bottom and top); weev - no. of weevils; prev - acorn infested (1) or not (0); prod - estimate of acorn production be the tree
DOI: 10.5061/dryad.2vk77/3
title: weevil_prev

description: Weevil prevalence, embryo depredation and cotyledon predation dataset. year - year of the data collection; treeid - tree ID; treat - nitrogen treatment (con - control, ln - low N, hn - high N); weight - acorn mass; height and width - acorn dimensions; totwe - total no. of weevils in the acorn; prev - acorn infested (0) or not (1); embryo - acorn survived (1) or not (0); cotyl - percent of depredated cotyledon; prod - estimated acorn production by the tree
DOI: 10.5061/dryad.31g05/10
title: LIB0216 de novo assembly

description: List of contigs generated from the de novo assembly in CLC Genomics Workbench
DOI: 10.5061/dryad.31g05/11
title: LIB0213 de novo assembly

description: List of contigs generated from the de novo assembly in CLC Genomics Workbench
DOI: 10.5061/dryad.31g05/12
title: LIB0179 de novo assembly

description: List of contigs generated from the de novo assembly in CLC Genomics Workbench
DOI: 10.5061/dryad.31g05/13
title: LIB0178 de novo assembly

description: List of contigs generated from the de novo assembly in CLC Genomics Workbench
DOI: 10.5061/dryad.31g05/14
title: LIB0182 de novo assembly

description: List of contigs generated from the de novo assembly in CLC Genomics Workbench
DOI: 10.5061/dryad.31g05/15
title: LIB0171 de novo assembly

description: List of contigs generated from the de novo assembly in CLC Genomics Workbench
DOI: 10.5061/dryad.31g05/16
title: LIB0175 de novo assembly

description: List of contigs generated from the de novo assembly in CLC Genomics Workbench
DOI: 10.5061/dryad.31g05/17
title: LIB0154 de novo assembly

description: List of contigs generated from the de novo assembly in CLC Genomics Workbench
DOI: 10.5061/dryad.31g05/9
title: LIB0217 de novo assembly

description: List of contigs generated from the de novo assembly in CLC Genomics Workbench
DOI: 10.5061/dryad.58791/1
title: PlosOne_beb
DOI: 10.5061/dryad.5r2p2/1
title: Galler and parasitism data

description: Data from an experimental manipulation on galler species and their parasitoids on the host plant species Baccharis dracunculifolia, carried out in Serra do Cipó, Minas Gerais state, south east Brazil. In the experiment the abundance of galler M7 was reduced in the replicated exclusion treatment plots. (Paras = parasitoid; paras_corrected = parasitism was corrected where parasitoids were gregarious so that the proportion parasitised was never more than 1)
DOI: 10.5061/dryad.5r2p2/2
title: Food Web Metrics

description: Data from an experimental manipulation on galler-parasitoid food webs on the host plant species Baccharis dracunculifolia, carried out in Serra do Cipó, Minas Gerais state, south east Brazil. In the experiment the abundance of galler M7 was reduced in the replicated exclusion treatment plots. Food web metrics are shown for food webs including and excluding the manipulated galler M7.
DOI: 10.5061/dryad.5t19f/1
title: P. crucifer Caller-Satellite Genotypic and Morphological Information
DOI: 10.5061/dryad.61k7n/1
title: EHV1 shedding data

description: This data set contains information obtained in three experimental infection studies on horses. The data table consists of 6 columns: (1) “shedding_amount” contains the estimated number of EHV-1 genome copies per mL nasal swab solution, (2) ”individual” contains an index for the identity of each animal, (3) “EHV1_variant” indicates the EHV1 variant that was used for infection, (4) “experiment” indicates to which experiment the data point belongs, (5) “day” describes on which day after infection the sample was collected, and (6) “experiment_day” is a combination of experiment and day.
DOI: 10.5061/dryad.6968k/1
title: AntTickR5

description: On-host tick data
DOI: 10.5061/dryad.6968k/2
title: FireAntMammR2Fixed

description: Small Mammal data
DOI: 10.5061/dryad.6q442/1
title: Dyadic aggressive interactions of Japanese macaques

description: The dataset consists of dyadic aggressive interactions occurring in one captive group of 57 Japanese macaques. The dataset contains information on the number and duration of observation, aggressor and victim id, time of aggressive event. The second sheet contains dyadic data of kinship and degree of association, expressed as CSI, composite Sociality Index. The third sheet includes information on individuals' id, rank, sex and year of birth.
DOI: 10.5061/dryad.724mk/1
title: 240 Chinook Salmon traits and network properties

description: Biological traits and network properties for all 240 Chinook salmon analyzed in this study
DOI: 10.5061/dryad.724mk/2
title: 255 Lamprey traits and network properties

description: Biological traits and network properties for all 255 Pacific lamprey analyzed in this study
DOI: 10.5061/dryad.90124/1
title: Site_community

description: Site level plant community data consisting of data collected from transects and from a directed search at each site. During the directed search, two researchers walked through each site for at least 60 minutes, identifying and recording species. Data is presence/absence.
DOI: 10.5061/dryad.90124/2
title: Plot_community

description: Plot level plant community data from restored tallgrass prairie in Illinois. Data from transect surveys. Each site was sampled using 2 50 meter transects. Study plots (0.25 m2 round quadrats) plots were placed on each transect, at 5 meter intervals, for a total of 20 plots per site. Vegetation data is presence/absence.
DOI: 10.5061/dryad.90124/3
title: Seed_mixes

description: Plant composition data for seed mixes planted to establish restored prairies in Illinois.
DOI: 10.5061/dryad.90124/4
title: Prairie_phylogeny

description: Newick tree file consisting of a phylogenetic tree of 589 species found in remnant and restored prairies, and seed mixes.
DOI: 10.5061/dryad.90124/5
title: Soil

description: Plot level soil data from restored prairies in Illinois. For each sample, we measured soil pH, electrical conductivity (EC), gravimetric soil moisture (GSM), and organic matter by mass loss on ignition (LOI).
DOI: 10.5061/dryad.g8h71/2
title: Immunohistochemical typing of adenocarcinomas of the pancreatobiliary system  - data and analysis code

description: Data and analysis code for study "Immunohistochemical Typing of Adenocarcinomas of the Pancreatobiliary System Improves Diagnosis and Prognostic Stratification"
DOI: 10.5061/dryad.g8h71/3
title: Immunohistochemical typing of adenocarcinomas of the pancreatobiliary system - Reproducible computer environment

description: Reproducible computer environment as Docker image for study "Immunohistochemical Typing of Adenocarcinomas of the Pancreatobiliary System Improves Diagnosis and Prognostic Stratification"