cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25442/hku.24182904.v1
title: Supporting Data for "Primary Producers on Coral Reefs: From Diversity to Function"

description: This repository contains the supporting datasets and scripts for analyses of the thesis titled "Primary Producers on Coral Reefs: From Diversity to Function", submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at The University of Hong Kong, School of Biological Sciences, Area of Ecology and Biodiversity.This thesis was completed under the primary supervision of Dr. David M. Baker, and co-supervision of Dr. Shelby McSharry McIlroy.Chapter 2 (Challenging the Urban Biotic Homogenization Hypothesis: Marine Eukaryote Communities Characterized through 18S DNA Metabarcoding) and Chapter 3 (Surveying Algal Biodiversity Across the Urbanized Seascape of the Hong Kong SAR: A Search for Potential Metabarcoding Bioindicators) present separate anlyses based on the same set of DNA amplicon sequences and accompanying environmental data. These two chapters are combined in one directory (Ch2Ch3_MarineGeo18S), within which there is a folder for the raw data and another folder for bioinformatics scripts. Chapters 4 (Tracing the Flow of Nutrients through an Acropora Holobiont Using Dual-Isotope Labelling) and 5 (Comparing Autotrophic and Heterotrophic Amino Acid Metabolism in an Acropora Holobiont through Compound-Specific Stable Isotope Analyses of Carbon and Nitrogen) each have their own folder, within which there are separate directories for the data and scripts.Further details regarding the contents of each folder can be found in the README file.
DOI: 10.25442/hku.24171903
title: <i>Supporting data for “PHOTOCHEMISTRY OF SELECTED BLEBBISTATIN DERIVATIVES AND ARYLPHOSPHIRANE DERIVATIVES”</i>

description: The thesis is about the study on the mechanisms of photochemistry of selected blebbistatin derivatives and arylphosphiranes, which have potential applications of drug delivery and organic synthesis respectively. The major technologies to reveal the mechanisms are transient spectroscopy and DFT calculation. The dataset includes the raw data of calculated spectra and transient absorption spectra in the thesis. These data provided the valid evidence of the mechanisms of the studied reactions. The files were named with the name of samples. The data can be transferred to figures and analysed by origin.
DOI: 10.25442/hku.24171903.v1
title: <i>Supporting data for “PHOTOCHEMISTRY OF SELECTED BLEBBISTATIN DERIVATIVES AND ARYLPHOSPHIRANE DERIVATIVES”</i>

description: The thesis is about the study on the mechanisms of photochemistry of selected blebbistatin derivatives and arylphosphiranes, which have potential applications of drug delivery and organic synthesis respectively. The major technologies to reveal the mechanisms are transient spectroscopy and DFT calculation. The dataset includes the raw data of calculated spectra and transient absorption spectra in the thesis. These data provided the valid evidence of the mechanisms of the studied reactions. The files were named with the name of samples. The data can be transferred to figures and analysed by origin.
DOI: 10.25442/hku.22632721
title: Supporting data for "The geography and governance of new town development through public-private partnerships in China"

description: The dataset is used in the thesis, "The geography and governance of new town development through public-private partnerships in China". This study endeavors to examine state-market relations in urban China, contributing to theoretical debates on the subject. The research aims to depict the geographical distribution of Urban Collaborative Development (UCD) projects across various Chinese cities. It also seeks to assess the correlation between these distributions and the cities' socioeconomic attributes. The research hypotheses are tested using regression models, considering five principal categories of factors. The first category involves the levels of economic development. The second examines the industrial structure. The third scrutinizes the business environment. The fourth evaluates land-based finance. The fifth takes into account the urban region. The results obtained from the research offer insights into the restructuring of urban governance and state-market relations through UCDs. The study underscores the significance of urban regional policies and land-based financing in the newly emerging urban development model.
DOI: 10.25442/hku.22632721.v1
title: Supporting data for "The geography and governance of new town development through public-private partnerships in China"

description: The dataset is used in the thesis, "The geography and governance of new town development through public-private partnerships in China". This study endeavors to examine state-market relations in urban China, contributing to theoretical debates on the subject. The research aims to depict the geographical distribution of Urban Collaborative Development (UCD) projects across various Chinese cities. It also seeks to assess the correlation between these distributions and the cities' socioeconomic attributes. The research hypotheses are tested using regression models, considering five principal categories of factors. The first category involves the levels of economic development. The second examines the industrial structure. The third scrutinizes the business environment. The fourth evaluates land-based finance. The fifth takes into account the urban region. The results obtained from the research offer insights into the restructuring of urban governance and state-market relations through UCDs. The study underscores the significance of urban regional policies and land-based financing in the newly emerging urban development model.
DOI: 10.25442/hku.24202956
title: <b><i>Supporting data for “</i></b>The role of interferon lambda in the pathogenesis of Sjögren's syndrome”

description: This dataset is the supporting data for “The role of interferon lambda in the pathogenesis of Sjögren's syndrome”.To investigate the role of interferon lambda in the pathogenesis of Sjögren's syndrome, in vivo experiments using experimental mouse models of Sjögren's syndrome and in vitro experiments using cultured salivary gland epithelial cells are conducted in this study. The original experimental raw data are obtained by different techniques, including enzyme-linked immunosorbent assay (ELISA), quantitative PCR (qPCR) data, flow cytometric staining, confocal imaging, histological analysis, and western blotting, etc.The dataset includes raw data as well as analyzed data as demonstrated in all the chapters in the submitted thesis.The contents include ELISA and q-PCR data in Excel and pzfx formats. Data are analyzed by Graphpad Prism software.Besides, raw histological, confocal images and Western blotting images in Jpeg/tiff format, which are easily readable, are also included in the dataset. All the images are labeled with detailed information of the groups and the detected markers. For confocal images, the information of different markers in different channels are also labeled.Raw flow cytometric data in FCS format are also included in the dataset, which are analyzed by Flowjo software. The generated images by FlowJo are also presented.Moreover, the dataset also includes PPT file of the presentation in departmental RPG seminar and a RPG poster in pdf file, which was displayed in scientific meeting of Hong Kong Society of Flow Cytometry in 2022.
DOI: 10.25442/hku.24202956.v1
title: <b><i>Supporting data for “</i></b>The role of interferon lambda in the pathogenesis of Sjögren's syndrome”

description: This dataset is the supporting data for “The role of interferon lambda in the pathogenesis of Sjögren's syndrome”.To investigate the role of interferon lambda in the pathogenesis of Sjögren's syndrome, in vivo experiments using experimental mouse models of Sjögren's syndrome and in vitro experiments using cultured salivary gland epithelial cells are conducted in this study. The original experimental raw data are obtained by different techniques, including enzyme-linked immunosorbent assay (ELISA), quantitative PCR (qPCR) data, flow cytometric staining, confocal imaging, histological analysis, and western blotting, etc.The dataset includes raw data as well as analyzed data as demonstrated in all the chapters in the submitted thesis.The contents include ELISA and q-PCR data in Excel and pzfx formats. Data are analyzed by Graphpad Prism software.Besides, raw histological, confocal images and Western blotting images in Jpeg/tiff format, which are easily readable, are also included in the dataset. All the images are labeled with detailed information of the groups and the detected markers. For confocal images, the information of different markers in different channels are also labeled.Raw flow cytometric data in FCS format are also included in the dataset, which are analyzed by Flowjo software. The generated images by FlowJo are also presented.Moreover, the dataset also includes PPT file of the presentation in departmental RPG seminar and a RPG poster in pdf file, which was displayed in scientific meeting of Hong Kong Society of Flow Cytometry in 2022.
DOI: 10.25442/hku.24220336
title: Supporting Data for "Small Molecule Fluorescent Probes for Alcohol Dehydrogenase, Catecholamines and Copper(I) Ion"

description: This dataset contains all the data collected in my PhD studies. The whole dataset is further divided into three subfolders that corresponds to <b>Chapter 2_ADH Project</b>, <b>Chapter 3_Catecholamines</b> <b>Project </b>and<b> Chapter 4_Cu(I) Project</b>. Each project contains NMR and HRMS data for molecules and copper complexes synthesized in my PhD studies. NMR data files can be opened and processed by Bruker TopSpin and HRMS data has been analysed by Bruker Compass DataAnalysis to obtain the PDF report files. Each project also contains excel files obtained from fluorescence and UV-Vis measurements. <b>Chapter 2_ADH Project</b> and <b>Chapter 3_Catecholamines</b> <b>Project </b>also contains LCMS and HPLC-UV data obtained by analysing the experimental results using Empower, Thermo Xcalibur Qual Browser and Chromeleon Chromatography Studio. <b>Chapter 2_ADH Project</b> and <b>Chapter 3_Catecholamines</b> <b>Project </b>also contains live cell imaging data obtained from Leica Confocal Laser Scanning Microscope using Leica Application Suite X. The images can be opened and processed by ImageJ.
DOI: 10.25442/hku.24220336.v1
title: Supporting Data for "Small Molecule Fluorescent Probes for Alcohol Dehydrogenase, Catecholamines and Copper(I) Ion"

description: This dataset contains all the data collected in my PhD studies. The whole dataset is further divided into three subfolders that corresponds to <b>Chapter 2_ADH Project</b>, <b>Chapter 3_Catecholamines</b> <b>Project </b>and<b> Chapter 4_Cu(I) Project</b>. Each project contains NMR and HRMS data for molecules and copper complexes synthesized in my PhD studies. NMR data files can be opened and processed by Bruker TopSpin and HRMS data has been analysed by Bruker Compass DataAnalysis to obtain the PDF report files. Each project also contains excel files obtained from fluorescence and UV-Vis measurements. <b>Chapter 2_ADH Project</b> and <b>Chapter 3_Catecholamines</b> <b>Project </b>also contains LCMS and HPLC-UV data obtained by analysing the experimental results using Empower, Thermo Xcalibur Qual Browser and Chromeleon Chromatography Studio. <b>Chapter 2_ADH Project</b> and <b>Chapter 3_Catecholamines</b> <b>Project </b>also contains live cell imaging data obtained from Leica Confocal Laser Scanning Microscope using Leica Application Suite X. The images can be opened and processed by ImageJ.
DOI: 10.6084/m9.figshare.24329608.v1
title: ETC raw data.xlsx

description: <b>Comparative toxicological effects of PFOS and its alternative 6:2 chlorinated polyfluorinated ether sulfonate on earthworms</b>
DOI: 10.6084/m9.figshare.24329608
title: ETC raw data.xlsx

description: <b>Comparative toxicological effects of PFOS and its alternative 6:2 chlorinated polyfluorinated ether sulfonate on earthworms</b>
DOI: 10.6084/m9.figshare.24330583
title: Preferable Mode Selection towards Sustainable Freight Transport: A Case Study of Laem Chabang Port in Thailand

description: An increasing demand for domestic freight transport to and from major seaports, such as Laem Chabang Port (LCP) in Thailand, by motorized vehicles entails intensified fuel combustion. This would lead to both environmental and socio-economic impacts, including GHG emissions, air/noise pollution, traffic congestion, and accidents. Consequently, strategies to support shifting towards more ecologically friendly options must be addressed to mitigate these impacts. The present study aims to identify key enablers and barriers to a modal shift, as well as to reveal manufactures’ preferences on the mode selection under specified scenarios. Data collection is carried out using the mixed approach—a qualitative in-depth interview with stakeholders in the freight industry and a quantitative questionnaire survey with manufacturers in three selected industrial estates. Outcome of 16 interviews indicates 20 significant factors categorized to five main groups—policy, operation, infrastructure, economy, and communication. The nested logit (NL) model uncovers several key aspects influencing freight transport choices for factories. These include mode characteristics, factory size, freight management, and, most importantly, time and cost considerations. However, the results of mode share preferences imply that even all infrastructure and facilities of the LCP phase 3 have been installed, the common truck and the tollway truck continue to hold the highest popularity. The present study concludes with the challenging measures to overcome the obstacles as well as enablers or motivational measures towards sustainable freight transport from the perspective of interview respondents.
DOI: 10.6084/m9.figshare.24330583.v1
title: Preferable Mode Selection towards Sustainable Freight Transport: A Case Study of Laem Chabang Port in Thailand

description: An increasing demand for domestic freight transport to and from major seaports, such as Laem Chabang Port (LCP) in Thailand, by motorized vehicles entails intensified fuel combustion. This would lead to both environmental and socio-economic impacts, including GHG emissions, air/noise pollution, traffic congestion, and accidents. Consequently, strategies to support shifting towards more ecologically friendly options must be addressed to mitigate these impacts. The present study aims to identify key enablers and barriers to a modal shift, as well as to reveal manufactures’ preferences on the mode selection under specified scenarios. Data collection is carried out using the mixed approach—a qualitative in-depth interview with stakeholders in the freight industry and a quantitative questionnaire survey with manufacturers in three selected industrial estates. Outcome of 16 interviews indicates 20 significant factors categorized to five main groups—policy, operation, infrastructure, economy, and communication. The nested logit (NL) model uncovers several key aspects influencing freight transport choices for factories. These include mode characteristics, factory size, freight management, and, most importantly, time and cost considerations. However, the results of mode share preferences imply that even all infrastructure and facilities of the LCP phase 3 have been installed, the common truck and the tollway truck continue to hold the highest popularity. The present study concludes with the challenging measures to overcome the obstacles as well as enablers or motivational measures towards sustainable freight transport from the perspective of interview respondents.
DOI: 10.6084/m9.figshare.19947425
title: Elasmobranch Landings Malvan, India 2018-20

description: This data was collected by Ms. Trisha Gupta from Malvan, central west coast of India in the state of Maharashtra. It forms the basis for analysis of catch composition in Malvan for the study titled 'Insights from catch composition and historical records of elasmobranchs in the Malvan fishery on the central west coast of India' which has been accepted for publication in the Journal of Fish Biology, 2023. DOI and link https://doi.org/10.1111/jfb.15416 - please do cite this paper and the Figshare DOI if this data is used for other studies or research work. This would be highly appreciated.Landing surveys were conducted over three sampling periods: February to May 2018, October 2018 to May 2019 and from December 2019 to March 2020. For the first two periods, sampling was conducted thrice a week on alternate days, while for the last period sampling was once a week on a randomly selected day. January–May constituted the pre-monsoon season and August–December constituted the post-monsoon season. Both morning and evening auctions were surveyed and all boats with elasmobranchs were sampled.Since on any given day only a fraction of the boats (50% on average) would land their catch for auction and due to the smaller scale of fisheries in Malvan, as compared to other bigger ports in India, all boats that landed elasmobranchs could be sampled. About 10% (by abundance) of each elasmobranch taxon was further sampled for biological data such as sex, maturity stage and size (total length TL for sharks and guitarfish, disc width DW for rays). Further through informal interviews data on fishery factors such as gear, depth, effort, time etc. were collected.
DOI: 10.6084/m9.figshare.19947425.v1
title: Elasmobranch Landings Malvan, India 2018-20

description: This data was collected by Ms. Trisha Gupta from Malvan, central west coast of India in the state of Maharashtra. It forms the basis for analysis of catch composition in Malvan for the study titled 'Compostion, characteristics and historical record of elamsobranch fisheries in Malvan, central west coast of India, provides insights for management'. Landing surveys were conducted over three sampling periods: February to May 2018, October 2018 to May 2019 and from December 2019 to March 2020. For the first two periods, sampling was conducted thrice a week on alternate days, while for the last period sampling was once a week on a randomly selected day. January–May constituted the pre-monsoon season and August–December constituted the post-monsoon season. Both morning and evening auctions were surveyed and all boats with elasmobranchs were sampled. Since on any given day only a fraction of the boats (50% on average) would land their catch for auction and due to the smaller scale of fisheries in Malvan, as compared to other bigger ports in India, all boats that landed elasmobranchs could be sampled. About 10% (by abundance) of each elasmobranch taxon was further sampled for biological data such as sex, maturity stage and size (total length TL for sharks and guitarfish, disc width DW for rays). Further through informal interviews data on fishery factors such as gear, depth, effort, time etc. were collected.
DOI: 10.6084/m9.figshare.19947425.v2
title: Elasmobranch Landings Malvan, India 2018-20

description: This data was collected by Ms. Trisha Gupta from Malvan, central west coast of India in the state of Maharashtra. It forms the basis for analysis of catch composition in Malvan for the study titled 'Insights from catch composition and historical records of elasmobranchs in the Malvan fishery on the central west coast of India' which has been accepted for publication in the Journal of Fish Biology, 2023. DOI and link https://doi.org/10.1111/jfb.15416 - please do cite this paper and the Figshare DOI if this data is used for other studies or research work. This would be highly appreciated.Landing surveys were conducted over three sampling periods: February to May 2018, October 2018 to May 2019 and from December 2019 to March 2020. For the first two periods, sampling was conducted thrice a week on alternate days, while for the last period sampling was once a week on a randomly selected day. January–May constituted the pre-monsoon season and August–December constituted the post-monsoon season. Both morning and evening auctions were surveyed and all boats with elasmobranchs were sampled.Since on any given day only a fraction of the boats (50% on average) would land their catch for auction and due to the smaller scale of fisheries in Malvan, as compared to other bigger ports in India, all boats that landed elasmobranchs could be sampled. About 10% (by abundance) of each elasmobranch taxon was further sampled for biological data such as sex, maturity stage and size (total length TL for sharks and guitarfish, disc width DW for rays). Further through informal interviews data on fishery factors such as gear, depth, effort, time etc. were collected.
DOI: 10.21335/nmdc-1733719820
title: Data from cruise no. 2021710, F/F Kronprins Haakon Nansen Legacy Joint Cruise 2-2

description: This dataset gives wet weights (g) per taxon in formalin fixed samples along with some fresh zooplankton organisms sorted from the catch on board during the cruise. The samples represent catches from a Midwater Ring Net (“MIK”, 2 m diameter) on a survey within the Nansen Legacy project in 2021. Large zooplankton were collected at five stations by hauling the MIK net vertically from a depth of 1000 meters depth to the surface. The MIK has a ~3.14 m2 mouth opening area, is ~13 m long, and with a mesh size of ~1600 μm apart from the last 1 m with mesh size of 500 µm (ICES, 2017). More details on the sampling method are given in Van Engeland et al. (2023) and references therein. Lower sampling depths are provided to enable calculation of volume and concentrations.
DOI: 10.21335/nmdc-32250601
title: Data from cruise no. 2022702, F/F Kronprins Haakon Nansen Legacy Joint Cruise 3

description: This dataset gives wet weights (g) per taxon in formalin fixed samples along with some fresh zooplankton organisms sorted from the catch on board during the cruise. The samples represent catches from a Midwater Ring Net (“MIK”, 2 m diameter) on a survey within the Nansen Legacy project in 2021. Large zooplankton were collected at four stations by hauling a MIK net vertically from 10-20 meters above the bottom to the surface, except P7 where a 1000m haul was done in addition to 3400m (bottom depth ~3406m). The MIK has a ~3.14 m2 mouth opening area, is ~13 m long, and with a mesh size of ~1600 μm apart from the last 1 m with mesh size of 500 µm (ICES, 2017). More details on the sampling method are given in Van Engeland et al. (2023) and references therein. Lower sampling depths are provided to enable calculation of volume and concentrations.
DOI: 10.25919/3rwv-2316
title: Identification of gene editing targets for rust control

description: The main aim of this project is generating a proof-of-concept that SDN-1 gene-editing can deliver enhanced adult plant resistance (APR) or implement new sources of broad-spectrum resistance to rust diseases in wheat. GRDC metadata collection for project is found in "Read me" file. See supporting documentation.
DOI: 10.6084/m9.figshare.24329710
title: <b>FAP+CAFs is a prognostic-related biomarker and correlated with immune infiltrates in ovarian cancer</b>

description: Our findings highlight the potential of utilizing FAP+CAFs as a valuable prognostic biomarker that is closely linked to immune in patients with ovarian cancer.
DOI: 10.6084/m9.figshare.24329710.v1
title: <b>FAP+CAFs is a prognostic-related biomarker and correlated with immune infiltrates in ovarian cancer</b>

description: Our findings highlight the potential of utilizing FAP+CAFs as a valuable prognostic biomarker that is closely linked to immune in patients with ovarian cancer.
DOI: 10.6084/m9.figshare.23798364
title: <b>Growth Mindset and ICT Integration in the Classroom of Indonesian Teacher</b>

description: The growing focus on how teachers are integrating information and communication technology (ICT) into their teaching methodologies is evident.