cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17111435
title: Prediction of the molecular mechanism of eucommiae Cortex - Achyranthis bidentatae radix in the treatment of osteoarthritis: network pharmacology and molecular docking

description: To retrieve the core drug of osteoarthritis in clinic using Data Mining, predict the drug molecular action target through the Network Pharmacology, identify the key nodes of the interaction by combining with the related targtes of osteoarthritis, explore the pharmacological mechanism of Traditional Chinese Medicine against osteoarthritis and other possible mechanisms of actions. to retrieve the commonly used therapeutic formulations for osteoarthritis patients in clinical with PubMed, CNKI, VIP, CBM, Wan Fang Database and other databases, and screen out the core drugs through the Ancient and Modern Medical Case Cloud Platform and software Gephi, filter out the core drug molecules and targets combined with TCMSP database and the targets of osteoarthritis in Genecard and OMIM database, plunge those data into R project and Cytoscape to construct the intersection model of Drug molecule-osteoarthritis, establish PPI network and GO and conduct KEGG enrichment analysis with String database. Vina molecular docking was finally implemented to draw molecular docking diagram, and the results were analyzed after comprehensive analysis. The core drug pairs were identified as ‘Eucommiae Cortex - Achyranthis Bidentatae Radix’ through correlation analysis, complex network analysis based on the coefficient. ‘Eucommiae Cortex - Achyranthis Bidentatae Radix’ can intervene cell behavior through multiple pathways and regulate cell metabolism, cytokine synthesis, oxidative and cellular immunity with the help of topology analysis in String Database. The core molecules of Quercetin and Kaempferol derived from ‘Eucommia bark – achyranthes’ can change the spatial conformation of PTGSs by hydrogen bonding with PTGSs, the hydrophobic bonds and van der Waals forces generated by Baicalein, Wogonin and β-carotene, thereby changing the activity of PTGSs and affecting bone properties the process of osteoarthritis.
DOI: 10.6084/m9.figshare.9771407
title: Additional file 2: of The fungicide azoxystrobin promotes freshwater cyanobacterial dominance through altering competition

description: Dataset 1. Detailed statistics of clean data, sample transcript and FPKM interval from six microcosms. Dataset 2. Taxonomic proportions in each microcosm. Dataset 3. Annotation and relative abundance of KOs in each microcosm. Dataset 4. Comparison in abundances between control and AZ groups at KEGG level 3. Dataset 5. Comparison in abundances between control and AZ groups at KEGG level 4. (XLSX 1138 kb)
DOI: 10.6084/m9.figshare.25243393
title: Stoichiometric variation within and between a terrestrial herbivorous and a semi-aquatic carnivorous mammal: supplementary material (spike-and-recovery experiments)

description: Supplementary material (spike-and-recovery experiments) belonging to paper: https://doi.org/10.1016/j.jtemb.2020.126622 <br>
DOI: 10.6084/m9.figshare.25243393.v1
title: Stoichiometric variation within and between a terrestrial herbivorous and a semi-aquatic carnivorous mammal: supplementary material (spike-and-recovery experiments)

description: Supplementary material (spike-and-recovery experiments) belonging to paper: https://doi.org/10.1016/j.jtemb.2020.126622 <br>
DOI: 10.6084/m9.figshare.11945961.v1
title: Additional file 4 of Transcriptome profiling provides insights into molecular mechanism in Peanut semi-dwarf mutant

description: Additional file 4 Table S2. Differentially expressed genes of leaf between sdm2 and FH1.
DOI: 10.6084/m9.figshare.19208780
title: Recent advances in improving the remediation performance of microbial electrochemical systems for contaminated soil and sediments

description: Remediation of contaminated soil and sediments has been drawing our attention, efficient and eco-friendly technologies are urgently needed for the removal of pollutants in soil and sediments. Although conventional remediation technologies have been in application for decades and have achieved great performance, the significant drawbacks limit their application (e.g., complicated operation and secondary pollution). Microbial electrochemical system (MES) has been intensively studied as a promising technology for soil/sediment remediation. Compared with other technologies, soil/sediment MES (SMES) exhibited many potential benefits, such as adequate electron acceptors, self-sustained operation, and facile control. However, due to the diversity of soil/sediment contamination and the significant difference in the remediation performance of conventional SMES, it is imperative to develop strategies for enhancing the remediation performance of SMES. In this review, we briefly introduce the removal mechanisms of different pollutants, including the mechanisms of electron releasing, transportation, and receiving. Afterward, we comprehensively present a detailed discussion of the recent progress in the enhancement of soil/sediment remediation in terms of reactor configurations, electrode arrangements, and electrode materials. Moreover, different materials used to amend soil/sediments and their corresponding enhancement principles are summarized in detail. Finally, we discuss the current emerging limitations of SMES and the future research endeavors to improve the performance and promote the practical application. Therefore, this review can fill the gaps in SMES development and guide the practical application in contaminated soil/sediments.
DOI: 10.6084/m9.figshare.10297004
title: MOESM1 of Intergenomic gene transfer in diploid and allopolyploid Gossypium

description: Additional file 1. Accession numbers for nuclear, mitochondrial and chloroplast genomes of four cotton species.
DOI: 10.6084/m9.figshare.10297004.v1
title: MOESM1 of Intergenomic gene transfer in diploid and allopolyploid Gossypium

description: Additional file 1. Accession numbers for nuclear, mitochondrial and chloroplast genomes of four cotton species.
DOI: 10.6084/m9.figshare.14489948
title: Additional file 5 of Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers

description: Additional file 5: Table S4. Significant peaks with somatic CNVs.
DOI: 10.6084/m9.figshare.10297046
title: MOESM9 of Intergenomic gene transfer in diploid and allopolyploid Gossypium

description: Additional file 9. Commands and their codes used in this study.
DOI: 10.6084/m9.figshare.10297046.v1
title: MOESM9 of Intergenomic gene transfer in diploid and allopolyploid Gossypium

description: Additional file 9. Commands and their codes used in this study.
DOI: 10.6084/m9.figshare.17110748
title: Additional file 1 of Circulating noncoding RNAs as early predictive biomarkers in preeclampsia: a diagnostic meta-analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.10297070
title: MOESM2 of Circ-HuR suppresses HuR expression and gastric cancer progression by inhibiting CNBP transactivation

description: Additional file 2: Table S5. Over-lapping analysis of circ-HuR-binding protein with RNA binding protein and transcription factor.
DOI: 10.6084/m9.figshare.10297070.v1
title: MOESM2 of Circ-HuR suppresses HuR expression and gastric cancer progression by inhibiting CNBP transactivation

description: Additional file 2: Table S5. Over-lapping analysis of circ-HuR-binding protein with RNA binding protein and transcription factor.
DOI: 10.6084/m9.figshare.24452851
title: Faecal metabolome responses to an altered dietary protein:carbohydrate ratio in adult dogs

description: High-protein diets may aid weight loss and weight maintenance programs in both humans and dogs, although the effect of dietary protein levels on gut metabolism and functionality has not been studied in depth. The current study aimed to investigate the effect of an altered dietary protein:carbohydrate ratio on gut function in adult dogs by means of faecal metabolomic fingerprinting. More specifically, functional metabolic differences in dogs fed a high-protein/low-carbohydrate (HPLC) <i>vs.</i> low-protein/high-carbohydrate (LPHC) diet were studied by equally allocating twelve clinically healthy (6 lean and 6 obese) Beagles into two groups in a cross-over design, with each group receiving two isocaloric diets for four weeks. The faecal metabolome revealed that different protein:carbohydrate ratio can influence host and/or gut microbiome metabolism and function, while no effect was observed on the body condition. Targeted analysis demonstrated that the HPLC diet significantly increased the concentration of indole, spermidine, and pipecolinic acid and decreased the concentration of azelaic acid, D-fructose, mannose, and galactose (<i>p</i> &lt; 0.05). Multivariate modelling (OPLS-DA) of the untargeted faecal metabolome revealed distinctly different metabolomic profiles following the HPLC <i>vs.</i> LPHC diet, with 18 altered pathways. The HPLC diet influenced amino acid and lipid metabolism, potentially promoting weight loss and immune function, whereas the LPHC diet affected carbohydrate fermentation and may promote anti-oxidative function.
DOI: 10.6084/m9.figshare.24452851.v1
title: Faecal metabolome responses to an altered dietary protein:carbohydrate ratio in adult dogs

description: High-protein diets may aid weight loss and weight maintenance programs in both humans and dogs, although the effect of dietary protein levels on gut metabolism and functionality has not been studied in depth. The current study aimed to investigate the effect of an altered dietary protein:carbohydrate ratio on gut function in adult dogs by means of faecal metabolomic fingerprinting. More specifically, functional metabolic differences in dogs fed a high-protein/low-carbohydrate (HPLC) <i>vs.</i> low-protein/high-carbohydrate (LPHC) diet were studied by equally allocating twelve clinically healthy (6 lean and 6 obese) Beagles into two groups in a cross-over design, with each group receiving two isocaloric diets for four weeks. The faecal metabolome revealed that different protein:carbohydrate ratio can influence host and/or gut microbiome metabolism and function, while no effect was observed on the body condition. Targeted analysis demonstrated that the HPLC diet significantly increased the concentration of indole, spermidine, and pipecolinic acid and decreased the concentration of azelaic acid, D-fructose, mannose, and galactose (<i>p</i> &lt; 0.05). Multivariate modelling (OPLS-DA) of the untargeted faecal metabolome revealed distinctly different metabolomic profiles following the HPLC <i>vs.</i> LPHC diet, with 18 altered pathways. The HPLC diet influenced amino acid and lipid metabolism, potentially promoting weight loss and immune function, whereas the LPHC diet affected carbohydrate fermentation and may promote anti-oxidative function.
DOI: 10.6084/m9.figshare.10297094
title: MOESM1 of Glioma SOX2 expression decreased after adjuvant therapy

description: Additional file 1: Table S1. SOX2 mRNA expression in 153 glioma cases in the TCGA database.
DOI: 10.6084/m9.figshare.10297094.v1
title: MOESM1 of Glioma SOX2 expression decreased after adjuvant therapy

description: Additional file 1: Table S1. SOX2 mRNA expression in 153 glioma cases in the TCGA database.
DOI: 10.6084/m9.figshare.14490059.v1
title: Additional file 2 of Genome sequence, transcriptome, and annotation of rodent malaria parasite Plasmodium yoelii nigeriensis N67

description: Additional file 2: Table S1. Statistics of de novo transcriptome sequence assembly of Illumina paired end reads using Trinity.
DOI: 10.6084/m9.figshare.14490077
title: Additional file 8 of Genome sequence, transcriptome, and annotation of rodent malaria parasite Plasmodium yoelii nigeriensis N67

description: Additional file 8: Table S7. Summary statistics of genes and orthogroups from three Plasmodium yoelii parasites.
DOI: 10.25989/wsby-pr59
title: Materials Experiment and Analysis Database: Electrochemistry measurements containing 0 files performed on plate containing Bi,Mn,Fe,Ga annealed at 610.0C to add O on 2014-04-02 from Run 20140402.143638

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20140402.143638.copied-20150131000000000PST.zip <a class="btn btn-xs piwik_download" 
            type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/wsby-pr59/20140402.143638.copied-20150131000000000PST.zip">
            <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/wsga-zb28
title: Materials Experiment and Analysis Database: Electrochemistry measurements containing 4 files performed on plate containing Bi,Mn,Sm,Co annealed at 610.0C to add O on 2014-04-29 from Run 20140428.172216

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20140428.172216.copied-20150131000000000PST.zip <a class="btn btn-xs piwik_download" 
            type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/wsga-zb28/20140428.172216.copied-20150131000000000PST.zip">
            <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/wsn1-0g61
title: Materials Experiment and Analysis Database: Sample imaging analysis in which 0 sub-analyses are performed on plate(s) containing Mn,Sn,Ta,Co,Co annealed at 350.0C to add O on 2014-03-26 from Analysis 20140325.214116

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20140325.214116.copied-20151126010208989PST.zip <a class="btn btn-xs piwik_download" 
            type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/wsn1-0g61/20140325.214116.copied-20151126010208989PST.zip">
            <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/wspk-gb43
title: Materials Experiment and Analysis Database: X-ray diffraction measurements containing 11 files performed on plate containing Cu,V,Ar,O annealed at 610.0C to add O on 2015-04-02 from Run 20150401.183213

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20150401.183213.copied-20170111220317311PST.zip <a class="btn btn-xs piwik_download" 
            type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/wspk-gb43/20150401.183213.copied-20170111220317311PST.zip">
            <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/wsvc-sc95
title: Materials Experiment and Analysis Database: Electrochemistry measurements containing 48 files performed on plate containing Mn,Ni,Ar annealed at 550.0C to add O on 2015-05-19 from Run 20150519.143956

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20150519.143956.copied-20150519220045592PDT.zip <a class="btn btn-xs piwik_download" 
            type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/wsvc-sc95/20150519.143956.copied-20150519220045592PDT.zip">
            <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/wsxa-6j05
title: Materials Experiment and Analysis Database: Electrochemistry measurements containing 2 files performed on plate containing Cu,V,V annealed at 560.0C to add O on 2014-08-22 from Run 20140821.180029

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20140821.180029.copied-20150131000000000PST.zip <a class="btn btn-xs piwik_download" 
            type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/wsxa-6j05/20140821.180029.copied-20150131000000000PST.zip">
            <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/wsxq-2h32
title: Materials Experiment and Analysis Database: Electrochemistry measurements containing 440 files performed on plate containing Ni,La,Co,Ce,Co annealed at 350.0C to add O on 2015-05-28 from Run 20150527.171719

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20150527.171719.copied-20150527220045435PDT.zip <a class="btn btn-xs piwik_download" 
            type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/wsxq-2h32/20150527.171719.copied-20150527220045435PDT.zip">
            <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/wt01-va21
title: Materials Experiment and Analysis Database: Electrochemistry measurements containing 888 files performed on plate containing Ni,Fe,Mn,Co annealed at 350.0C to add S on 2015-11-02 from Run 20151102.142933

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20151102.142933.copied-20151102220203098PST.zip <a class="btn btn-xs piwik_download" 
            type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/wt01-va21/20151102.142933.copied-20151102220203098PST.zip">
            <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/wt04-s630
title: Materials Experiment and Analysis Database: Optical spectroscopy measurements containing 2066 files performed on plate containing CuV,Cu,Ca,Al,Pd,Cr,Ti,Mg annealed at 565.0C to add O on 2016-10-24 from Run 20161024.131837

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20161024.131837.copied-20161025220401822PDT.zip <a class="btn btn-xs piwik_download" 
            type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/wt04-s630/20161024.131837.copied-20161025220401822PDT.zip">
            <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/wt2c-3778
title: Materials Experiment and Analysis Database: Electrochemistry measurements containing 3798 files performed on plate containing Ni,Co,Ce,Gd annealed at 350.0C to add O on 2014-11-18 from Run 20141118.093057

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20141118.093057.copied-20150131000000000PST.zip <a class="btn btn-xs piwik_download" 
            type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/wt2c-3778/20141118.093057.copied-20150131000000000PST.zip">
            <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.