cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6406064
title: nps_boundary_california.prjNational Park Areas California

description: GIS layers for national park service areas.GIS Layers of the National Parks in California. Used to crop out unavailable areas for wood harvest
DOI: 10.6084/m9.figshare.6406064.v1
title: nps_boundary_california.prjNational Park Areas California

description: GIS layers for national park service areas.GIS Layers of the National Parks in California. Used to crop out unavailable areas for wood harvest
DOI: 10.6084/m9.figshare.6406049.v1
title: Minimax Estimation of the Volume of a Set under the Rolling Ball Condition

description: We consider the problem of estimating the volume of a compact domain in a Euclidean space based on a uniform sample from the domain. We assume that the domain has a boundary with positive reach. We propose a data splitting approach to correct the bias of the plug-in estimator based on the sample α-convex hull. We show that this simple estimator achieves a minimax lower bound that we derive. Some numerical experiments corroborate our theoretical findings.
DOI: 10.6084/m9.figshare.6406040.v1
title: Sequential nonparametric tests for a change in distribution: An application to detecting radiological anomalies

description: We propose a sequential nonparametric test for detecting a change in distribution, based on windowed Kolmogorov–Smirnov statistics. The approach is simple, robust, highly computationally efficient, easy to calibrate, and requires no parametric assumptions about the underlying null and alternative distributions. We show that both the false-alarm rate and the power of our procedure are amenable to rigorous analysis, and that the method outperforms existing sequential testing procedures in practice. We then apply the method to the problem of detecting radiological anomalies, using data collected from measurements of the background gamma-radiation spectrum on a large university campus. In this context, the proposed method leads to substantial improvements in time-to-detection for the kind of radiological anomalies of interest in law-enforcement and border-security applications.
DOI: 10.6084/m9.figshare.6406007
title: Wilderness_Areas_10.31.17.shxCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6406007.v1
title: Wilderness_Areas_10.31.17.shxCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6406004
title: Wilderness_Areas_10.31.17.shp.xmlCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6406004.v1
title: Wilderness_Areas_10.31.17.shp.xmlCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6406001
title: Wilderness_Areas_10.31.17.shpCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6406001.v1
title: Wilderness_Areas_10.31.17.shpCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6405998
title: Wilderness_Areas_10.31.17.sbxCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6405998.v1
title: Wilderness_Areas_10.31.17.sbxCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6405995
title: Wilderness_Areas_10.31.17.dbfCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6405995.v1
title: Wilderness_Areas_10.31.17.dbfCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6405992
title: Wilderness_Areas_10.31.17.cpgCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6405992.v1
title: Wilderness_Areas_10.31.17.cpgCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6405989
title: Wilderness_Areas_10.31.17.sbnCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6405989.v1
title: Wilderness_Areas_10.31.17.sbnCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6405986
title: Wilderness_Areas_10.31.17.prjCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6405986.v1
title: Wilderness_Areas_10.31.17.prjCalifornia Wilderness Areas

description: Set of GIS Layers that describe California's Wilderness Areas
DOI: 10.6084/m9.figshare.6405941
title: GHWR codes

description: This folder included the MATLAB codes used to generate GHWR. Future users can run these codes on the CPC global temperature data set, or any other input temperature source. The user should modify the codes if using temperature data set other than CPC.
DOI: 10.6084/m9.figshare.6402518
title: PTA_García2017_Electronic Supplementary Material.xlsx from Continuous wavelet transform in the study of the time-scale properties of intracranial pressure in hydrocephalus

description: Data supporting the paper “Continuous wavelet transform in the study of the time-scale properties of intracranial pressure in hydrocephalus”
DOI: 10.6084/m9.figshare.6402518.v1
title: PTA_García2017_Electronic Supplementary Material.xlsx from Continuous wavelet transform in the study of the time-scale properties of intracranial pressure in hydrocephalus

description: Data supporting the paper “Continuous wavelet transform in the study of the time-scale properties of intracranial pressure in hydrocephalus”
DOI: 10.6084/m9.figshare.6402422
title: p2NIL empty Vector

description: Empty vector by Tania Parish used to generate the deletion constructs
DOI: 10.6084/m9.figshare.6402422.v1
title: p2NIL empty Vector

description: Empty vector by Tania Parish used to generate the deletion constructs
DOI: 10.6084/m9.figshare.6402419
title: pGOAL17 vector

description: Empty vector by Tania Parish used to generate the deletion constructs
DOI: 10.6084/m9.figshare.6402416
title: pMV306hsp complementation vector

description: Vector used to generate the complementation constructs
DOI: 10.6084/m9.figshare.6402419.v1
title: pGOAL17 vector

description: Empty vector by Tania Parish used to generate the deletion constructs
DOI: 10.6084/m9.figshare.6402416.v1
title: pMV306hsp complementation vector

description: Vector used to generate the complementation constructs
DOI: 10.6084/m9.figshare.6402410
title: Ecological features of feather microbiota in breeding common swifts

description: We provide the first-ever investigation of feather microbiota by high throughput DNA sequencing for any bird species by describing bacteria found on the innermost tertial feather of 22 adult common swifts (<i>Apus apus</i>). We found feather microbiomes with large abundance of Bacillales, Actinomycetales, Burkholderiales, Sphingobacteriales, Sphingomonadales, Rhizobiales, Pseudomonadales, Clostridiales, Rubrobacterales and Lactobacillales. Bacterial communities did not change with any feature of individual swifts. Network and cluster analysis of feather microbiomes disclosed three clusters, characterized by bacteria typical of seawater, plants and soil and unrelated to conditions at the breeding grounds. We hypothesize that feather microbiomes reflect, at least partly, airborne bacterial communities of the environments where individuals spent non-breeding periods, or of those that they crossed during migration, rather than breeding environment. If confirmed, this evidence may disclose the possibility to use feather bacteria as proxies for tracing non-breeding origin and routes of migratory birds.
DOI: 10.6084/m9.figshare.6402410.v1
title: Ecological features of feather microbiota in breeding common swifts

description: We provide the first-ever investigation of feather microbiota by high throughput DNA sequencing for any bird species by describing bacteria found on the innermost tertial feather of 22 adult common swifts (<i>Apus apus</i>). We found feather microbiomes with large abundance of Bacillales, Actinomycetales, Burkholderiales, Sphingobacteriales, Sphingomonadales, Rhizobiales, Pseudomonadales, Clostridiales, Rubrobacterales and Lactobacillales. Bacterial communities did not change with any feature of individual swifts. Network and cluster analysis of feather microbiomes disclosed three clusters, characterized by bacteria typical of seawater, plants and soil and unrelated to conditions at the breeding grounds. We hypothesize that feather microbiomes reflect, at least partly, airborne bacterial communities of the environments where individuals spent non-breeding periods, or of those that they crossed during migration, rather than breeding environment. If confirmed, this evidence may disclose the possibility to use feather bacteria as proxies for tracing non-breeding origin and routes of migratory birds.
DOI: 10.6084/m9.figshare.6402335
title: Additional_file_2_evolutionary_rates_statistical_test.xlsx

description: Additional file 2 for paper <b>Revelation of the Genetic Basis for Convergent </b><b>novel </b><b>Anal Fin Pigmentation Patterns in Cichlid Fishes</b>
DOI: 10.6084/m9.figshare.6402335.v1
title: Additional_file_2_evolutionary_rates_statistical_test.xlsx

description: Additional file 2 for paper <b>Revelation of the Genetic Basis for Convergent </b><b>novel </b><b>Anal Fin Pigmentation Patterns in Cichlid Fishes</b>
DOI: 10.6084/m9.figshare.6402332
title: Additional_file_1_illumina_reads.xlsComparative Transcriptomic Analyses Between Two Convergent Novel Anal Fin Pigmentation Patterns in Cichlid Fishes

description: Supplementary file of paper <b>Revelation of the Genetic Basis for Convergent </b><b>novel </b><b>Anal Fin Pigmentation Patterns in Cichlid Fishes</b>
DOI: 10.6084/m9.figshare.6402332.v1
title: Additional_file_1_illumina_reads.xls

description: Supplementary file of paper <b>Revelation of the Genetic Basis for Convergent </b><b>novel </b><b>Anal Fin Pigmentation Patterns in Cichlid Fishes</b>
DOI: 10.6084/m9.figshare.6402194
title: Simulation source code from The evolution of juvenile susceptibility to infectious disease

description: Source code (C++) for the evolutionary simulations
DOI: 10.6084/m9.figshare.6402194.v1
title: Simulation source code from The evolution of juvenile susceptibility to infectious disease

description: Source code (C++) for the evolutionary simulations
DOI: 10.6084/m9.figshare.6402146
title: Possible freshwater dinoflagellate cysts and colonial algae from the Upper Jurassic strata of the Surat Basin, Australia

description: Jurassic sedimentary successions in eastern Australia are widely thought to have been deposited in nonmarine environments. Thus, the discovery of low-diversity dinoflagellate cyst assemblages with associated colonial algae in the Walloon Coal Measures of the western Surat Basin provides new evidence of either a short-lived marine transgression or the very rare occurrence of nonmarine dinoflagellate cysts in pre-Cretaceous strata. Their small size, thin walls and simple proximate shapes are typical of freshwater to brackish dinoflagellate cysts, as are the low species richness and high dominance nature of the assemblages. Two new species of dinoflagellate cysts (<i>Moorodinium crispa</i> sp. nov. and <i>Skuadinium fusum</i> sp. nov.) and a new species of colonial algae (<i>Palambages pariunta</i> sp. nov.) are described from these assemblages. Tidal channel and tidal mudflat facies associated with these assemblages provide evidence of a possible upper estuarine setting. Support for a marine incursion is provided by U–Pb dating. This yielded an age of 150.11 ± 0.04 Ma (∼100 m above the dinoflagellate cyst assemblage in the Indy 3 well) that ties to an episode of high eustatic sea level during the Tithonian. Thus, a marine transgressive event during the Tithonian may have allowed dinoflagellates to migrate into the interior of the Australian continent. If these dinoflagellate cysts are found more widely, rather than being just an isolated occurrence in this well, they may provide a useful correlative tool for tracing distinctive brackish to marginal marine flooding surfaces in continental successions in eastern Australia.
DOI: 10.6084/m9.figshare.6402143
title: A Cretaceous dinoflagellate cyst palynozonation of northern Egypt

description: The multiplicity of dinoflagellate cyst biozones in Cretaceous rocks limits their correlation applications, and the variations in the scientific bases of such zonations complicates age determinations and limits the validity of reliable inter-basinal correlations. The present work provides a useful summary of the dinoflagellate cyst occurrence data in Egypt and a proposed working Egyptian biozonation scheme for the area. The most diagnostic dinoflagellate cyst bioevents, in a definite time interval which occurs widely in most of the studied Egyptian, North African and Tethyan sections, are selected to be marker taxa for the erected zones. The eastern Canadian and northern European data consistently show much higher range tops for the dinoflagellate cysts at those high latitudes. The comparison and correlation of the contemporaneous dinoflagellate cyst range tops from Egypt and geographically neighbouring North African areas are vital for selecting widely distributed marker taxa and testing their validity and applicability to intercontinental correlations in the Tethyan Realm. Based on 29 wells located across Northern Egypt, this work provides a potentially useful scheme that unifies the different previously established dinoflagellate cyst palynozonation frameworks for Cretaceous rocks. The index palyno-events represented by the last occurrence datums (LODs) of the marker dinoflagellate cyst taxa are carefully picked from palynostratigraphies established earlier and methodically, consistently used to create a new regional palynostratigraphical scheme for all of the northern Egyptian territory. Ten dinoflagellate cyst interval zones were identified and described; these are, in descending stratigraphic order from youngest to oldest, <i>Dinogymnium acuminatum</i> (Maastrichtian–Campanian), <i>Odontochitina operculata</i> (Santonian–Coniacian), <i>Cyclonephelium vannophorum</i> (Turonian), <i>Dinopterygium cladoides</i> (late–middle Cenomanian), <i>Coronifera oceanica</i> (middle–early Cenomanian), <i>Oligosphaeridium complex</i> (late–middle Albian), <i>Subtilisphaera perlucida</i> (early Albian), <i>Cribroperidinium orthoceras</i> or <i>C. edwardsii</i> (Aptian–late Barremian), <i>Muderongia simplex</i> or <i>Pesudoceratium anaphrissum</i> (Barremian–late Hauterivian) and <i>Systematophora silybum</i> (Hauterivian–Berriasian).
DOI: 10.6084/m9.figshare.6402146.v1
title: Possible freshwater dinoflagellate cysts and colonial algae from the Upper Jurassic strata of the Surat Basin, Australia

description: Jurassic sedimentary successions in eastern Australia are widely thought to have been deposited in nonmarine environments. Thus, the discovery of low-diversity dinoflagellate cyst assemblages with associated colonial algae in the Walloon Coal Measures of the western Surat Basin provides new evidence of either a short-lived marine transgression or the very rare occurrence of nonmarine dinoflagellate cysts in pre-Cretaceous strata. Their small size, thin walls and simple proximate shapes are typical of freshwater to brackish dinoflagellate cysts, as are the low species richness and high dominance nature of the assemblages. Two new species of dinoflagellate cysts (<i>Moorodinium crispa</i> sp. nov. and <i>Skuadinium fusum</i> sp. nov.) and a new species of colonial algae (<i>Palambages pariunta</i> sp. nov.) are described from these assemblages. Tidal channel and tidal mudflat facies associated with these assemblages provide evidence of a possible upper estuarine setting. Support for a marine incursion is provided by U–Pb dating. This yielded an age of 150.11 ± 0.04 Ma (∼100 m above the dinoflagellate cyst assemblage in the Indy 3 well) that ties to an episode of high eustatic sea level during the Tithonian. Thus, a marine transgressive event during the Tithonian may have allowed dinoflagellates to migrate into the interior of the Australian continent. If these dinoflagellate cysts are found more widely, rather than being just an isolated occurrence in this well, they may provide a useful correlative tool for tracing distinctive brackish to marginal marine flooding surfaces in continental successions in eastern Australia.
DOI: 10.6084/m9.figshare.6402143.v1
title: A Cretaceous dinoflagellate cyst palynozonation of northern Egypt

description: The multiplicity of dinoflagellate cyst biozones in Cretaceous rocks limits their correlation applications, and the variations in the scientific bases of such zonations complicates age determinations and limits the validity of reliable inter-basinal correlations. The present work provides a useful summary of the dinoflagellate cyst occurrence data in Egypt and a proposed working Egyptian biozonation scheme for the area. The most diagnostic dinoflagellate cyst bioevents, in a definite time interval which occurs widely in most of the studied Egyptian, North African and Tethyan sections, are selected to be marker taxa for the erected zones. The eastern Canadian and northern European data consistently show much higher range tops for the dinoflagellate cysts at those high latitudes. The comparison and correlation of the contemporaneous dinoflagellate cyst range tops from Egypt and geographically neighbouring North African areas are vital for selecting widely distributed marker taxa and testing their validity and applicability to intercontinental correlations in the Tethyan Realm. Based on 29 wells located across Northern Egypt, this work provides a potentially useful scheme that unifies the different previously established dinoflagellate cyst palynozonation frameworks for Cretaceous rocks. The index palyno-events represented by the last occurrence datums (LODs) of the marker dinoflagellate cyst taxa are carefully picked from palynostratigraphies established earlier and methodically, consistently used to create a new regional palynostratigraphical scheme for all of the northern Egyptian territory. Ten dinoflagellate cyst interval zones were identified and described; these are, in descending stratigraphic order from youngest to oldest, <i>Dinogymnium acuminatum</i> (Maastrichtian–Campanian), <i>Odontochitina operculata</i> (Santonian–Coniacian), <i>Cyclonephelium vannophorum</i> (Turonian), <i>Dinopterygium cladoides</i> (late–middle Cenomanian), <i>Coronifera oceanica</i> (middle–early Cenomanian), <i>Oligosphaeridium complex</i> (late–middle Albian), <i>Subtilisphaera perlucida</i> (early Albian), <i>Cribroperidinium orthoceras</i> or <i>C. edwardsii</i> (Aptian–late Barremian), <i>Muderongia simplex</i> or <i>Pesudoceratium anaphrissum</i> (Barremian–late Hauterivian) and <i>Systematophora silybum</i> (Hauterivian–Berriasian).
DOI: 10.6084/m9.figshare.6401906
title: Additional file 1: of Next generation phenotyping using narrative reports in a rare disease clinical data warehouse

description: Extracted phenotypical concepts per cohort. For each cohort, we list the top50 concepts ranked by Frequency and TF-IDF. The first column is the UMLS code of the phenotypical concepts, the second column is the French preferred terms, the third column is the English preferred terms, the fourth column is the frequencies score (FREQ), the fifth column is the TF-IDF score, the sixth column is the rank of the concept sorted by the frequency score, the seventh column is the rank of the concept sorted by the TF-IDF score and the eighth column is the expert evaluation (1: relevant concept, 0: none relevant concept). (XLS 93 kb)
DOI: 10.6084/m9.figshare.6401906.v1
title: Additional file 1: of Next generation phenotyping using narrative reports in a rare disease clinical data warehouse

description: Extracted phenotypical concepts per cohort. For each cohort, we list the top50 concepts ranked by Frequency and TF-IDF. The first column is the UMLS code of the phenotypical concepts, the second column is the French preferred terms, the third column is the English preferred terms, the fourth column is the frequencies score (FREQ), the fifth column is the TF-IDF score, the sixth column is the rank of the concept sorted by the frequency score, the seventh column is the rank of the concept sorted by the TF-IDF score and the eighth column is the expert evaluation (1: relevant concept, 0: none relevant concept). (XLS 93 kb)
DOI: 10.6084/m9.figshare.6401882
title: Additional file 1: of Oral microbiota in youth with perinatally acquired HIV infection

description: List of supplemental tables. Table S1. Ratio of average counts (at the species level) in perinatally HIV-exposed, infected (PHIV) versus perinatally exposed, uninfected (PHEU), with Bayesian False Discovery Probabilities and False Positive Report Probabilities. Table S2. Ratio of average counts (at the genus level) in perinatally HIV-exposed, infected (PHIV) versus perinatally exposed, uninfected (PHEU), with Bayesian False Discovery Probabilities and False Positive Report Probabilities. Table S3. Is the strength of association of periodontitis presence with oral taxa's counts the same inperinatally exposed, infected (PHIV) youth compared with perinatally exposed, uninfected (PHEU) youth?. Table S4. Is the strength of association of caries presence with oral taxa's counts the same in perinatally exposed, infected (PHIV) youth compared with perinatally exposed, uninfected (PHEU) youth?. (XLSX 214Â kb)
DOI: 10.6084/m9.figshare.6401882.v1
title: Additional file 1: of Oral microbiota in youth with perinatally acquired HIV infection

description: List of supplemental tables. Table S1. Ratio of average counts (at the species level) in perinatally HIV-exposed, infected (PHIV) versus perinatally exposed, uninfected (PHEU), with Bayesian False Discovery Probabilities and False Positive Report Probabilities. Table S2. Ratio of average counts (at the genus level) in perinatally HIV-exposed, infected (PHIV) versus perinatally exposed, uninfected (PHEU), with Bayesian False Discovery Probabilities and False Positive Report Probabilities. Table S3. Is the strength of association of periodontitis presence with oral taxa's counts the same inperinatally exposed, infected (PHIV) youth compared with perinatally exposed, uninfected (PHEU) youth?. Table S4. Is the strength of association of caries presence with oral taxa's counts the same in perinatally exposed, infected (PHIV) youth compared with perinatally exposed, uninfected (PHEU) youth?. (XLSX 214Â kb)
DOI: 10.6084/m9.figshare.6401801
title: Additional file 3: of Comparative transcriptome analysis of nonchilled, chilled, and late-pink bud reveals flowering pathway genes involved in chilling-mediated flowering in blueberry

description: Table S3. DE phytohormones in chilled flower buds(CB) [vs nonchilled flower buds (NB)] and late-pink buds (LPB) (vs CB) in â Legacyâ . LogFC for chilled buds: Log2(CB/NB). LogFC for late-pink buds: Log2(LPB/CB). Except #N/A (no differential expression), all the rest are DE genes. (XLSX 401 kb)
DOI: 10.6084/m9.figshare.6401801.v1
title: Additional file 3: of Comparative transcriptome analysis of nonchilled, chilled, and late-pink bud reveals flowering pathway genes involved in chilling-mediated flowering in blueberry

description: Table S3. DE phytohormones in chilled flower buds(CB) [vs nonchilled flower buds (NB)] and late-pink buds (LPB) (vs CB) in â Legacyâ . LogFC for chilled buds: Log2(CB/NB). LogFC for late-pink buds: Log2(LPB/CB). Except #N/A (no differential expression), all the rest are DE genes. (XLSX 401 kb)