cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14776239.v4
title: Humidity and low pH boost occurrence of Onygenales fungi in soil at global scale

description: Richness data for producing predict richness of Onygenales fungi globally.<br>
DOI: 10.6084/m9.figshare.28173473.v1
title: Comparison of the current TCGA histological glioma type classes with the simplified label provided by Method-2016 and Method-2021

description: Comparing, for each sample, the current TCGA histological type classes (“TCGA.histological.type” column), with the simplified label we provide by applying Method-2016 (“classification.2016” column) and Method-2021 (“classification.2021” column).
DOI: 10.6084/m9.figshare.28600353.v1
title: Additional file 1 of Comparative genomics reveals the high diversity and adaptation strategies of Polaromonas from polar environments

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28704953.v1
title: 水变化加剧和生物炭添加​

description: 该数据集来自一项孵化实验，该实验在 25°C 的温度和 40% 的相对湿度下在黑暗中进行，持续了大约三个月。取样于中国东北西部抚蒙县（41°44′–42°34′N，21°01′–122°26′E）的主要土壤，根据美国农业部土壤分类法，土壤类型被归类为铝质土壤。该地区属半干旱气候，年平均气温为 8.8°C，平均降水量约为 476 毫米，其中 85% 的降雨量发生在 5 月至 9 月之间，与最高气温相吻合。土壤被归类为沙壤土（国际土壤分类），由 56.2% 的沙子、36.0% 的淤泥和 7.8% 的粘土组成。本研究对生物炭添加比例和水变异强度进行了共 3 × 3 个处理，包括 C0：0（无添加）、C1：1% 添加比例和 C2：2% 添加比例（g·g–1 土壤），水分变异性处理包括 W0：在 60% 的持水能力 （WHC） 下无变异性，W1：从 20% 的 WHC 到 100% 的 WHC 的高变异性， 和 W2：从 WHC 的 40% 到 WHC 的 80% 的低变异性。土壤水稳定团聚体组成每个处理重复 3 次，方法是将土壤样品通过 0.25 mm 和 0.053 mm 的筛子，得到大团聚体 （&gt; 0.25 mm）、微团聚体 （0.053-0.25 mm） 和矿物相关 SOC 分数 （&lt; 0.053 mm）。三个重复的平均土壤团聚体质量 （%） 及其标准误差 （SE） 在 Aggregate &gt; &lt;数据表中提供。
DOI: 10.6084/m9.figshare.5663455.v3
title: Data from "Disentangling the role of floral sensory stimuli to pollination networks"

description: <b>Supplementary Data 1:</b> The weighted plant-pollinator interactions network including 41 plant and 168 insect species, recorded in a Mediterranean scrubland (phrygana) in Lesvos Island, Greece.<br><b>Supplementary Data 2: </b>Inflorescence volatile compounds of the plant species studied.
DOI: 10.6084/m9.figshare.7901234.v1
title: gVCF_HG03439

description: 1000 Genomes gVCF mapped to hs37d5 for HG03439. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/4k8f4t352y
title:  Synthetic data for Li-ion Batteries Degradation Maps with degradation example

description: This dataset contains the data associated with the publication "Best Practices for Incremental Capacity Analysis" in Frontiers in Energy Research. It consists of synthetic data for the main Li-ion chemistries for different degradations.

Available chemistries:
GIC/NMC111
GIC/NMC532
GIC/LCO
GIC/NCA
GIC/LMO
GIC/(NMC,LMO)
GIC/LFP
(GIC/Si)/NMC811
LTO/NMC
LTO/LMO
LTO/(NCA/LCO)

Map files contains data for up to 30% of each degradation mode individually (or 500% for kinetic and resistance variations) at C/25 in charge and discharge.
The variable Mapindex summarizes the order for the data in the Params and Voltage variables (Vmc and Vmd, for charge and discharge respectively).
The variable Params summarizes the simulation parameters (column index in Paramindex). Qmc and Qmd contains the capacity values in charge and discharge respectively.

Example files contains data for up to 15% LLI, 10%LAMPE, and 10%LAMNE C/25 simulations in charge and discharge with 3 % increments (for LLI) and 2% increments (for LAMs).
The variable Params summarizes the simulation parameters (column index in Paramindex). Qc and Qd contains the capacity values in charge and discharge respectively and Vc, and Vd the voltage response.

All simulations were performed with the 2022 version of the alawa toolbox using stock electrode data. Voltage and kinetics of electrodes from different manufacturers, with different composition, or with different architecture might differ significantly.
DOI: 10.17632/9wpjrt5nfx
title: ROLE OF CONTINUOUS WAVE VS PULSE WAVE AND COLOR DOPPLER IN IDENTIFYING ARTERIAL PERFORATORS OF LOWER LIMB

description: An arterial perforator is a vessel, which arises from a main (parent) artery and passes through the intermuscular/septocutaneous/myocutaneous plane to supply blood to the deeper structures.

In the present day, arterial perforators have become the mainstay of perforator flap reconstructive surgeries after trophic or superficial soft tissue defects, secondary to insults like burns, trauma or gangrene secondary to peripheral vaso-occlusive pathology.

Even though there is voluminous and ever-increasing knowledge of anatomy, there is no systematic approach to locate the perforating arteries in the lower limb. This is mainly due to high amount of anatomical variation amongst individuals and asymmetry being the general rule in every individual. There is asymmetry in anatomical spread of arterial perforators between two lower limbs of one individual as well.

Therefore, it is natural that the pre-operative planning before surgical flap surgery cannot be based upon any previously laid down set of rules. Every individual must be evaluated independent Lee and anatomical variations in perforator a mapping must be taken into account.

Continuous-Wave Doppler (CW Doppler)

CW doppler is the one of the simpler configurations of Doppler imaging & consists of 2 different types of transducers: a receiving & a transmitting transducer. The main role of the transmitting transducer is to produce a continuous ultrasound beam output
at a predetermined frequency. This transmitted signal is then received by receiving
 

crystal. Addition of the received and transmitted signals is done, which leads to formation of a waveform which consists of a beat frequency. This beat frequency is equal to the doppler-shift frequency. There is no information or data provided the continuous wave doppler in terms of the depth of the point of analysis or at which the analyzed motion is occurring, that causes the doppler shift.1

Pulsed Wave Doppler (PW Doppler)

The main aim of development of pulse wave doppler was to primary obtain information regarding depth perception of the region of interest which is leading to the doppler shift phenomenon. Also, PW doppler system comprises of only one transducer. This same transducer does the job of transmitting and receiving signals. There is substantial difference in the pulse used for pulse wave doppler as compared to pulse which is used in B mode imaging. Electronic gating is used which times interval between the transmitted and received pulse. This allows the operator to analyze a specific point along the long axis of the transmitted beam. Main output from a PW doppler is primarily an audible signal. When combined together, PW doppler and B mode imaging are called Duplex ultrasound imaging. This lets the operator to analyze both entities together and focus on a specific point in the B mode image for doppler analysis
DOI: 10.6084/m9.figshare.26461216.v1
title: Determining Factors and Perceived Barriers to Intermittent Preventive Treatment with Sulfadoxine-Pyrimethamine Uptake during Pregnancy among Postpartum Mothers in an Urban District of Ghana

description: Our study investigates critical factors and barriers affecting the uptake of intermittent preventive treatment (IPT) with sulfadoxine-pyrimethamine during pregnancy, focusing on postpartum mothers in an urban district of Ghana. This research is significant as it provides insights into public health challenges and helps identify potential interventions to improve maternal and fetal health outcomes in regions affected by malaria. By addressing these barriers, we aim to contribute to the broader discourse on effective strategies for IPT implementation and maternal health care.
DOI: 10.6084/m9.figshare.28400867.v1
title: Source Data for Dual Filament Regulation of Relaxation in Mammalian Fast Skeletal Muscle

description: Source data relating to data presented in figures and tables for the research article titled Dual Filament Regulation of Relaxation in Mammalian Fast Skeletal Muscle.Data are separated into individual pages per the order or presentation of the figures. Data are presented as individual data derived from fitting of the X-ray diffraction data, and calculated as mean, SD and SEM throughout.
DOI: 10.6084/m9.figshare.29178812.v1
title: Adrenal schwannomas and Adrenal ganglioneuromas: Our experience and CT characteristic‐focused systematic review. Supplementary data

description: Adrenal schwannomas and Adrenal ganglioneuromas: Our experience and CT characteristic‐focused systematic review. Supplementary data
DOI: 10.6084/m9.figshare.22731665.v1
title: <strong>Lower diversity in benthic macrofaunal assemblages associated with increasing riparian deforestation in first order lowland tropical streams</strong>

description: Environmental data and macrofauna from lowland streams in eastern Amazonia.
DOI: 10.6084/m9.figshare.25058690.v1
title: 数据集：.zip

description: The MMOTU dataset consists of ovarian ultrasound images collected from Beijing Shijitan Hospital, Capital Medical University. The dataset is divided into two subsets: OTU 2D and OTU CEUS. The OTU 2D subset contains ultrasound images.The OTU CEUS subset consists of 170 images extracted from CEUS sequences.The MMOTU ovarian tumor ultrasound dataset used in the paper titled "PMFFNet: A hybrid network based on feature pyramid for ovarian tumor segmentation" is stored here. If needed, you can download and access it yourself. The dataset we employed in our study is sourced from the MMOTU image dataset, which comprises ovarian ultrasound images collected from Beijing Shijitan Hospital, Capital Medical University.If you would like to access the original MMOTU dataset, please click on the following link: https://drive.google.com/drive/folders/1c5n0fVKrM9-SZE1kacTXPt1pt844iAs1
DOI: 10.6084/m9.figshare.7851452.v1
title: C-Stock Baseline Datasets

description: Baseline data collected in October/November 2017 as part of the project entitled "Replicating C-Stock: Making Essential Health Commodities Available at the Community Level". Data collected from CHVs, CHAs and facilities in two sub-counties in Kenya.
DOI: 10.6084/m9.figshare.8799221.v1
title: DrugZ results

description: Data folder containing drugZ (chemogenetic interactions) results.
DOI: 10.6084/m9.figshare.19336391.v1
title: Xya riparia Genome Assemble and Annotation

description: These files are the genome assembly and annotation of the genome of Xya riparia, a species of orthopteran insect.
DOI: 10.6084/m9.figshare.22109204.v1
title: Supporting data for: "Sensing their plasma membrane curvature allows migrating cells to circumvent obstacles" by Ewa Sitarska, Silvia Dias Almeida, Marianne Sandvold Beckwith, Julian Stopp, Jakub Czuchnowski, Marc Siggel, Rita Roessner, Aline Tschanz, Christer Ejsing, Yannick Schwab, Jan Kosinski, Michael Sixt, Anna Kreshuk, Anna Erzberger and Alba Diz-Muñoz

description: This repository contains the supporting data for the paper: <strong>"Sensing their plasma membrane curvature allows migrating cells to circumvent obstacles"</strong> by Ewa Sitarska, Silvia Dias Almeida, Marianne Sandvold Beckwith, Julian Stopp, Jakub Czuchnowski, Marc Siggel, Rita Roessner, Aline Tschanz, Christer Ejsing, Yannick Schwab, Jan Kosinski, Michael Sixt, Anna Kreshuk, Anna Erzberger and Alba Diz-Muñoz <br> <strong>1) Data for Coarse-Grained MD Simulations</strong> This repository contains scripts, jupyter notebooks and files to reproduce the simulation results presented in this work and to generate the accompanying figures. <br> !! Important note: these files are provided as is! scripts and top files include original file names and need to be adapted by the user to their system!! !! tpr files should work for gromacs 2021 out of the box !! TPR files for each step in the setup from minimization -&gt; equilibation -&gt; production _pp.tpr is without water for processing and visualization purposes. the .tpr files can be run to reproduce the trajectories from the paper. Note that due to numerical inaccuracies over long periods of time results might diverge from the exact results in the paper. However, the time averages will be the same. Files with _275 are presented in the main text and have less curvature than files with _575 with higher curvature (SI figure). the itp files are renamed to be used with the scaled martini force field (alpha=0.7) (see methods of paper) the setup can be followed in setup_curvature.sh and setup.system.ipynb analysis code as reported in the methods can be found in postprocessing_curvature.ipynb and postprocessing_contacts.ipynb <br> <strong>2) Scripts for TIRFM Images analysis</strong> (in zip file) time_area_space.py is a simple script that performs some shape and intensity calculations on images <br> You will need: 1) time framed movies of moving cells, where correspondent membrane proteins are also seen 2) Cell segmentation masks 3) Protein segmentation masks <br> It reads the cells' segmentation (channel 3) and binary erodes the segmentation. Then, subtracts from the original membrane mask, in order to have a border area of the perimeter of the cell. Then, calculates the percentage of proteins in that area (proteins area / border area) and the ratio of number of proteins in the border versus the total number of proteins Finally, performs a number of calculations regarding the shape (elongation, eccentricity, etc) <br> <br> <br>
DOI: 10.6084/m9.figshare.14317313.v1
title: Data for Baud et al. (2021) JGR

description: CT, DVC, and mechanical data for Indiana limestone. Data for Baud et al. (2021; JGR).
DOI: 10.6084/m9.figshare.19762351.v1
title: CFs_station_Vs

description: It includes frequency domain cross-correlation function data and an S-wave velocity model of the eastern South China continent and its adjacent areas
DOI: 10.6084/m9.figshare.25872310.v1
title: Anonymous Confirmed Myocardial Infarction Patient Vignettes

description: Dataset containing the 100 anonymous patient vignettes used in the study: Evaluating the Diagnostic and Triage Performance of Digital and Online Symptom Checkers for the Presentation of Myocardial Infarction; A Retrospective Cross-Sectional Study.
DOI: 10.15468/dl.sxhbwm
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Potentilla verticillaris Stephan ex Willd.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 23 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013382-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.11591763.v2
title: Human Oral Metapangenomes

description: Anvi'o databases for Rothia and Haemophilus parainfluenzae metapangenomes (cultivar genomes + HMP metagenomes)
DOI: 10.6084/m9.figshare.21990455.v1
title: Extended lifespan and sex-specific fertility loss in cold-acclimated flies of the sibling species Drosophila buzzatii and Drosophila koepferae

description: This excel file contains three datasets corresponding to the data included in "Extended lifespan and sex-specific fertility loss in cold-acclimated flies of the sibling species <em>Drosophila buzzatii</em> and <em>Drosophila koepferae"</em> by Kreiman, et al. These datasets are used in the ovarian maturation, survival, longevity and reproductive output (fecundity and fertility) analyses.
DOI: 10.6084/m9.figshare.24052236.v1
title: Data Files SPSS and XLSX Format and Variable Codes (PDF)

description: Dataset accompanying the data descriptor for publication in Scientific Data entitled: Data on the prevalence of psychiatric symptoms in UK university students. More specifically, the current data provides crucial information concerning the prevalence of anxiety, depression, mania, insomnia, stress, suicidal ideation, psychotic experiences and loneliness amongst a sample of N=1408 UK university students. A cross-sectional online questionnaire-based study was implemented. Online recruitment for this dataset began on September 17<sup>th</sup>, 2018, and ended on the 30<sup>th</sup> July 2019. Eight validated measures were used: Generalized Anxiety Disorder Scale; Patient Health Questionnaire; The Mood Disorder Questionnaire; The Sleep Condition Indicator; The Perceived Stress Scale; Suicidal Behaviours Questionnaire-Revised; The Prodromal Questionnaire 16 (PQ-16); and the University of California Loneliness Scale.
DOI: 10.17632/x2vxf48mn3
title: Dataset for Green hydrogen in Colombia: a view into the country's available resources and their potential to meet domestic and international H2 demand

description: This dataset contains the results from the research focused in calculating Colombia's potential to produce hydrogen by: (1) electrolysis powered with solar photovoltaics (SPV), onshore (WON) and offshore wind turbines, as well as (2) biomass involved processes such as gasification, digestion and ethanol steam reforming. 
The inputs for these calculations were taken mostly from government sources and energy organizations. 
"Calculations for electrolysis H2 production" consists in two parts: (i) an estimation of the H2 production rate potential calculated by the possible WON, WOF, hydropower and SPV capacity that could be installed in Colombia. The last (SPV) at the same time was an estimation calculated based on information from SPV plants in Colombia, so two possibilities were calculated: (a) installing the same capacity and (b) using 1 % of available surface of each region in Colombia to install SPV. (ii) Furthermore, scenarios to comply with domestic and international demand were calculated. 
"Calculations for Biomass H2 production" consists in two parts: (i) an estimation of the H2 production rate potential calculated by the possible technologies (i.e. gasification, digestion and ethanol reforming) and the biomass with higher production in Colombia: Banana and plantain, sugar and panela cane, rice, oil palm, livestock wastes and bioethanol. A projection for the growth of these residues and feedstock production is also presented to determine the H2 potential from these sources in future years. (ii) Therefore,
scenarios to comply with domestic and international demand were calculated.
DOI: 10.17632/yxcrmgcndz
title: Data from: Effects of climate variability and hydrologic rehabilitation measures on long-term mangrove trajectories: from reproduction to recruitment and landscape cover changes

description: Contains data used to produce every graph for the paper "Effects of climate variability and hydrologic rehabilitation measures on long-term mangrove trajectories: from reproduction to recruitment and landscape cover changes". Variables reported includes: porewater salinity, surface salinity, ONI, types of hydrologic rehabilitation measures and mangrove coverage historically in Cienaga Grande de Santa Marta (CGSM). Also contains data of propagule density and seedling/sapling diameter growth rate of L. racemosa, A. germinans and R. mangle in CGSM
DOI: 10.17632/9sdysmyt6b
title: Sovereign spread divergence owing to inflation and redenomination risk countered by unconventional monetary policy in the Eurozone

description: Using a panel vector error correction (VECM) model, we assess sovereign spread divergence in the Eurozone. Recent literature defines redenomination risk as a member state’s unilateral exit from the Eurozone, estimated by the quanto Credit default swaps (CDS) spread (qCDS). We show that sovereign spread divergence is driven not only by the qCDS but also by inflation and US dollar liquidity shocks. We also find evidence that the balance sheet structure better describes the European Central Bank’s (ECB) unconventional monetary policy (UMP) shocks than the shadow rate. Such policy shocks had a greater impact in the early 2020s than between the global financial crisis and the COVID-19 pandemic (2008Q1–2019Q4). Thus, this paper makes a new contribution to the debate on the ECB’s instruments to maintain price stability objectives and avoid divergence of sovereign bond yields while emphasizing cross-central bank swap lines.
DOI: 10.6084/m9.figshare.1185763.v4
title: WK3 Experiment 1: Woodlot, Dataset 4

description: Method: Beginning with two 100ft transects in the middle of Saywell Woodlot at York University. From the path that runs through the center of the woodlot, scouted an area with a fair amount of trees if one were to walk in a straight line away from the path. Unravelled one of the transects and walked a relatively straight line from the path through a moderately dense area of trees. At intervals of about 8ft, selected a suitable adult balsam widow and, using the other transect, measured its trunk diameter at breast height(approximately 4ft 10in from the ground). Proceeded to find the nearest balsam widow sapling and measure the diameter of the trunk and the distance between the sapling and adult trees at the same height. For canopy coverage a makeshift square was created with experimenter's hands and raised to the sky while standing about 1.5ft from the adult tree. Canopy coverage was then estimated based on the ratio of leaves and branches to the sky that could be seen in the makeshift square. This process was then repeated at apporximately 8ft intervals until data was collected on 10 pairs of adult balsam widows and balsam widow saplings.
DOI: 10.6084/m9.figshare.2009586.v10
title: NEON Spatio-temporal Teaching Data Subset

description: This includes teaching data subsets that contains spatio-temporal data for the National Ecological Observatory Network's Harvard Forest and San Joaquin Experimental Range (SJER) field sites.The tutorials using these data subset can be found on the NEON Data Skills portal . CONTENTS:NEON-DS-Met-Time-Series.zip: Precipitation, temperature and other variables collected from a flux tower at the NEON Harvard Forest site. NOTE: these data are not collected from the NEON tower.NEON-DS-Site-Layout-Files.zip: A set of shapefiles for the NEON's Harvard Forest field site and US and (some) state boundary layers.NEON-DS-Landsat-NDVI.zip: 2011 NDVI data product provided by USGS cropped to NEON's Harvard Forest and San Joaquin Experimental Range field sites.NEON-DS-Airborne-RemoteSensing.zip: LiDAR data including a canopy height model, digital elevation model and digital surface model for NEON's Harvard Forest and San Joaquin Experimental Range field sites.
DOI: 10.6084/m9.figshare.28302245.v1
title: Supplementary Material for: Efficacy of Dose Escalation of Ustekinumab in Inflammatory Bowel Disease: A Systematic Review and Meta-Analysis

description: Background: Ustekinumab is an effective drug in the treatment of inflammatory bowel disease (IBD), but inadequate response or loss of response is reported in several patients. Dose escalation by intravenous reinduction or interval shortening may be a suitable option to recapture response. We undertook a systematic review and meta-analysis to assess the efficacy of dose escalation in IBD patients receiving ustekinumab. Methods: A systematic literature search was conducted on PubMed, Embase, Clinicaltrails.gov and Cochrane from inception to June 1st, 2024. We conducted a proportional meta-analysis on MetaXL. Our primary outcomes were clinical response and clinical remission. Results: Twenty-eight articles were included (n = 2,129 patients). Eighteen studies (692 patients out of 1,218) reported clinical response, with pooled prevalence of 55% (95% CI: 46% - 65%). Out of 1,041 patients, 524 showed clinical remission with pooled prevalence of 51% (95%CI: 42% - 59%). Conclusion: This systematic review and meta-analysis showcased promising results, in terms of clinical response and remission, in IBD patients receiving dose escalation of ustekinumab.