cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14095841
title: GRF_F_ML_RAW_right

description: The file is structured as a matrix with T rows × K columns (T=8,819; K=216). Each row holds the data of one gait trial. The first column identifies each dataset (“DATASET_ID”), the second column each participant (“SUBJECT_ID”), the third column each gait analysis session (“SESSION_ID”), and the fourth column each single gait trial within a session (“TRIAL_ID”). The remaining columns contain the values of the medio-lateral GRF signals for each gait trial. Note that due to the non-normalized nature of the data and the resulting different time-series lengths in the “RAW” files, non-available numbers have been replaced by “NaN” to maintain a constant matrix-dimension.
DOI: 10.6084/m9.figshare.14095847
title: GRF_metadata

description: The metadata file contains additional participant and session-related information. The file is structured as a matrix with S rows × M columns (S=661; M=21). Here, the first three columns hold the DATASET_ID, SUBJECT_ID, and SESSION_ID, the other columns hold information such as sex, body mass, and age. Non-available numbers have been replaced by “NaN” to maintain a constant matrix-dimension.
DOI: 10.6084/m9.figshare.14095849
title: GRF_walking_speed

description: The file is structured as a matrix with T rows × L columns (T=8,819; L=5). Each row holds the data of one gait trial. The first column identifies each dataset (“DATASET_ID”), the second column each participant (“SUBJECT_ID”), the third column each gait analysis session (“SESSION_ID”), and the fourth column each single gait trial within a session (“TRIAL_ID”). The fifth column contains the measured walking speed for each gait trial (“WALKING_SPEED”). The walking speed was not measured in datasets 6, 8, and 10. Non-available numbers have been replaced by “NaN” to maintain a constant matrix-dimension.
DOI: 10.6084/m9.figshare.14095841.v1
title: GRF_F_ML_RAW_right

description: The file is structured as a matrix with T rows × K columns (T=8,819; K=216). Each row holds the data of one gait trial. The first column identifies each dataset (“DATASET_ID”), the second column each participant (“SUBJECT_ID”), the third column each gait analysis session (“SESSION_ID”), and the fourth column each single gait trial within a session (“TRIAL_ID”). The remaining columns contain the values of the medio-lateral GRF signals for each gait trial. Note that due to the non-normalized nature of the data and the resulting different time-series lengths in the “RAW” files, non-available numbers have been replaced by “NaN” to maintain a constant matrix-dimension.
DOI: 10.6084/m9.figshare.14095849.v1
title: GRF_walking_speed

description: The file is structured as a matrix with T rows × L columns (T=8,819; L=5). Each row holds the data of one gait trial. The first column identifies each dataset (“DATASET_ID”), the second column each participant (“SUBJECT_ID”), the third column each gait analysis session (“SESSION_ID”), and the fourth column each single gait trial within a session (“TRIAL_ID”). The fifth column contains the measured walking speed for each gait trial (“WALKING_SPEED”). The walking speed was not measured in datasets 6, 8, and 10. Non-available numbers have been replaced by “NaN” to maintain a constant matrix-dimension.
DOI: 10.6084/m9.figshare.14095845.v1
title: GRF_F_V_PRO_right

description: The file is structured as a matrix with T rows × K columns (T=8,819; K=105). Each row holds the data of one gait trial. The first column identifies each dataset (“DATASET_ID”), the second column each participant (“SUBJECT_ID”), the third column each gait analysis session (“SESSION_ID”), and the fourth column each single gait trial within a session (“TRIAL_ID”). The remaining columns contain the values of the vertical GRF signals for each gait trial.
DOI: 10.6084/m9.figshare.14095847.v1
title: GRF_metadata

description: The metadata file contains additional participant and session-related information. The file is structured as a matrix with S rows × M columns (S=661; M=21). Here, the first three columns hold the DATASET_ID, SUBJECT_ID, and SESSION_ID, the other columns hold information such as sex, body mass, and age. Non-available numbers have been replaced by “NaN” to maintain a constant matrix-dimension.
DOI: 10.6084/m9.figshare.14802921
title: Data processing script for Matlab

description: Data processing script for Matlab
DOI: 10.6084/m9.figshare.14802921.v1
title: Data processing script for Matlab

description: Data processing script for Matlab
DOI: 10.5281/zenodo.4528973
title: Dataset related to article "The antibody response to SARS-CoV-2 infection persists over at least 8 months in symptomatic patients"

description: This set of data is related to article "The antibody response to SARS-CoV-2 infection persists over at least 8 months in symptomatic patients" Abstract The factors involved in the persistence of antibodies to SARS-CoV-2 are unknown. We evaluated the antibody response to SARS-CoV-2 in personnel from 10 healthcare facilities and its association with individuals’ characteristics and COVID-19 symptoms in an observational study. We enrolled 4735 subjects (corresponding to 80% of all personnel) over a period of 5 months when the spreading of the virus was drastically reduced. For each participant, we determined the rate of antibody increase or decrease over time in relation to 93 features analyzed in univariate and multivariate analyses through a machine learning approach. In individuals positive for IgG ( ≥ 12 AU/mL) at the beginning of th study, we found an increase [p= 0.0002] in antibody response in symptomatic subjects, particularly with anosmia/dysgeusia (OR 2.75, 95% CI 1.753 – 4.301), in a multivariate logistic regression analysis. This may be linked to the persistence of SARS-CoV-2 in the olfactory bulb.
DOI: 10.5281/zenodo.5176029
title: Dataset for "Oxidase-type C-H/C-H coupling using an isoquinoline-derived organic photocatalyst"

description: We have uploaded the corresponding raw and processed data for each figure from main text and supporting information. We also uploaded the raw data of NMR and HR-MS for characterization of the organic products.
DOI: 10.5281/zenodo.5205584
title: raw data for the article "Direct Photoexcitation of EthynylBenziodoXolones: An Alternative to Photocatalysis for Alkynylation Reactions"

description: Raw NMR, MS and IR data for the article "Direct Photoexcitation of EthynylBenziodoXolones: An Alternative to Photocatalysis for Alkynylation Reactions" published in Angewandte Chemie, International Edition, DOI: https://onlinelibrary.wiley.com/doi/10.1002/anie.202110257R1 The number of the folders correspond to compounds numbers in the article. All details concerning conditions and equipment for measurements can be found in the supporting information of the article.
DOI: 10.5281/zenodo.5205583
title: raw data for the article "Direct Photoexcitation of EthynylBenziodoXolones: An Alternative to Photocatalysis for Alkynylation Reactions"

description: Raw NMR, MS and IR data for the article "Direct Photoexcitation of EthynylBenziodoXolones: An Alternative to Photocatalysis for Alkynylation Reactions" published in Angewandte Chemie, International Edition, DOI: https://onlinelibrary.wiley.com/doi/10.1002/anie.202110257R1 The number of the folders correspond to compounds numbers in the article. All details concerning conditions and equipment for measurements can be found in the supporting information of the article.
DOI: 10.6084/m9.figshare.14472915.v1
title: How Many Online Workers?

description: An unknown number of people around the world are earning income by working through online labour platforms such as Upwork and Amazon Mechanical Turk. We combine data collected from various sources to build a data-driven assessment of the number of such online workers (also known as online freelancers) globally. Our headline estimate is that there are 163 million freelancer profiles registered on online labour platforms globally. Approximately 19 million of them have obtained work through the platform at least once, and 5 million have completed at least 10 projects or earned at least $1000. These numbers suggest a substantial growth from 2015 in registered worker accounts, but much less growth in amount of work completed by workers. Our results indicate that online freelancing represents a non-trivial segment of labour today, but one that is spread thinly across countries and sectors. <br>
DOI: 10.6084/m9.figshare.14528859
title: Systematic review of pregnancy and neonatal health outcomes associated with exposure to e-waste disposal

description: Electronic waste (e-waste), the world’s fastest-growing category of hazardous solid waste, poses a serious health risk for recyclers, scavenger workers, and residents of communities near waste disposal sites in many countries with developing economies and those in transition. The toxic components of e-waste have been linked to various adverse health outcomes. The objective of this study was to assess the effects of e-waste exposures on pregnancy outcomes and neonate’s health. We systematically searched original full-length articles in three electronic databases namely Web of Science, ProQuest health and medical databases, and Google Scholar for publications related to e-waste and pregnancy outcomes and neonate’s health. Outcomes from most study showed possible association between exposure to e-waste and pregnancy and adverse neonatal health outcomes including sex-specific differences in infants’ growth, placental transfer of toxicants, thyroid hormones disruption, DNA methylation and oxidative damage, ALAD genotypes, carcinogenic risks, and sex hormones disruption in pregnant women and developing fetus. The results support evidence that e-waste exposure is associated with negative effects on pregnancy and neonatal health outcomes. However, improvements in the design of epidemiological investigations, and more investigations from South Asia, Africa, and Latin America are needed to confirm these associations.
DOI: 10.6084/m9.figshare.14472915
title: How Many Online Workers?

description: An unknown number of people around the world are earning income by working through online labour platforms such as Upwork and Amazon Mechanical Turk. We combine data collected from various sources to build a data-driven assessment of the number of such online workers (also known as online freelancers) globally. Our headline estimate is that there are 163 million freelancer profiles registered on online labour platforms globally. Approximately 19 million of them have obtained work through the platform at least once, and 5 million have completed at least 10 projects or earned at least $1000. These numbers suggest a substantial growth from 2015 in registered worker accounts, but much less growth in amount of work completed by workers. Our results indicate that online freelancing represents a non-trivial segment of labour today, but one that is spread thinly across countries and sectors. <br>
DOI: 10.6084/m9.figshare.14472915.v2
title: How Many Online Workers?

description: An unknown number of people around the world are earning income by working through online labour platforms such as Upwork and Amazon Mechanical Turk. We combine data collected from various sources to build a data-driven assessment of the number of such online workers (also known as online freelancers) globally. Our headline estimate is that there are 163 million freelancer profiles registered on online labour platforms globally. Approximately 19 million of them have obtained work through the platform at least once, and 5 million have completed at least 10 projects or earned at least $1000. These numbers suggest a substantial growth from 2015 in registered worker accounts, but much less growth in amount of work completed by workers. Our results indicate that online freelancing represents a non-trivial segment of labour today, but one that is spread thinly across countries and sectors. <br>
DOI: 10.6084/m9.figshare.15022281
title: Ortholog-based Protein-protein Interaction Prediction in Arabidopsis

description: The Arabidopsis predicted PPIN constructed based on interolog method, include 526,367 interactions among 10,105 proteins.<br>
DOI: 10.6084/m9.figshare.15022281.v5
title: Ortholog-based Protein-protein Interaction Prediction in Arabidopsis

description: The Arabidopsis predicted PPIN constructed based on interolog method, include 526,367 interactions among 10,105 proteins.<br>
DOI: 10.6084/m9.figshare.16445535
title: Supplementary Material for: The Regulation of Prototype Foamy Virus 5′Long Terminal Repeats and Internal Promoter by Endogenous Transcription Factors

description: <b><i>Background:</i></b> For foamy virus, the transactivator of spumaretrovirus (Tas) could bind directly to target DNA sequences termed as Tas responsive elements and trigger the viral internal promoter (IP) and long terminal repeat (LTR) promoters. The cellular endogenous factors also play an important role in viral gene expressions. We hypothesized that except the viral transcription factor Tas, the cellular endogenous factors also affect the viral gene expression. <b><i>Methods:</i></b> The full length of the prototype foamy virus (PFV) genome (U21247) was used to predict the potential binding sites of the transcription factors by online software JASPAR (http://jaspar.genereg.net) and Softberry (http://linux1.softberry.com/berry.phtml?topic=index&group=programs&subgroup=promoter). The Dual-Luciferase<sup>®</sup> Reporter Assay System (Promega, USA) was used to confirm the relative luciferase activities of the test groups. The different representative activating agents or inhibitors of each canonical signal pathway were used to identify the impact of these pathways on PFV 5′LTR and IP promoters. <b><i>Results:</i></b> The results showed different cellular endogenous factors might have respective effects on PFV 5′LTR and IP. It is worth mentioning that activator protein-1 and BCL2-associated athanogene 3, 2 kinds of vital proteins associated with NF-κB and PKC pathways, could activate the basal activity of 5′LTR and IP promoters but inhibit the Tas-regulated activity of both promoters. Furthermore, PFV Tas was identified to trigger the transcription of the NF-κB promoter. <b><i>Conclusion:</i></b> NF-κB had a negative effect on PFV 5′LTR and IP promoter activities, the PKC pathway might upregulate 5′LTR and IP promoter activities, and the JNK and NF-AT signal pathway could increase the Tas-regulated promoter activity of PFV 5′LTR. This study sheds light on the interaction between PFV and the host cell and may help utilize the viral promoters in retroviral vectors designed for gene transfer experiments.
DOI: 10.5281/zenodo.5266425
title: Code related to article "The antibody response to SARS-CoV-2 infection persists over at least 8 months in symptomatic patients"

description: This code is related to article "The antibody response to SARS-CoV-2 infection persists over at least 8 months in symptomatic patients" Abstract The factors involved in the persistence of antibodies to SARS-CoV-2 are unknown. We evaluated the antibody response to SARS-CoV-2 in personnel from 10 healthcare facilities and its association with individuals’ characteristics and COVID-19 symptoms in an observational study. We enrolled 4735 subjects (corresponding to 80% of all personnel) over a period of 5 months when the spreading of the virus was drastically reduced. For each participant, we determined the rate of antibody increase or decrease over time in relation to 93 features analyzed in univariate and multivariate analyses through a machine learning approach. In individuals positive for IgG ( ≥ 12 AU/mL) at the beginning of th study, we found an increase [p= 0.0002] in antibody response in symptomatic subjects, particularly with anosmia/dysgeusia (OR 2.75, 95% CI 1.753 – 4.301), in a multivariate logistic regression analysis. This may be linked to the persistence of SARS-CoV-2 in the olfactory bulb.
DOI: 10.6084/m9.figshare.14599847.v1
title: The multiple stakeholder approach to real-world evidence (RWE) generation: observing multidisciplinary expert consensus on quality indicators of rare disease patient registries (RDRs)

description: Those invested in the outcome of specific decisions may seek to inform the decision-maker by generating relevant evidence. With multiple decision-makers, the evidence generator benefits from understanding whether their needs differ. This was explored using relevant stakeholders’ preferences on quality indicators (QIs) of rare disease patient registries (RDRs), a common vehicle for generating evidence, to support the adoption of new medicines. The Jandhyala method was used to compare the observed consensus on RDR quality indicators from each stakeholder group (SHG) and between the combined pharmaceutical (pharma) and non-pharmaceutical (non-pharma) SHG population. All non-pharmaceutical stakeholder groups were equally unique – suggesting QIs peculiar to themselves – Patients (13/102; 12.75%); Payors (5/102; 4.90%); Prescribers (7/102; 6.86%) to the same degree. Non-pharmaceutical stakeholders generated 31/102 (30.39%) unique QIs. Pharma stakeholder generated 25/102 (24.51%). This totals 56/102 (54.90%) QIs without a match. Two QIs were unanimously suggested and agreed upon by all SHGs (7/7; 100%) – “Engages with patients and gains their buy-in” and “Includes a core data set as part of outcomes”. There was homogenous consensus on common QIs between: Commercial – Market Access (13/52; 25%; <i>p</i> = .005) SHGs; Commercial – Medical Affairs (9/47; 19.15%; <i>p</i> = .001) SHGs; Commercial – Payor (11/41; 21.15%; <i>p</i> = .012) SHGs, and Market Access – Regulatory Affairs (10/41; 19.61%; <i>p</i> = .008) SHGs. A multiple stakeholder approach for generating real-world evidence can be justified. The potential mismatch of 54.9% between pharma and non-pharma stakeholders indicates a critical misalignment between generator and consumer of its RWE. Pharmaceutical SHG’s were highlighted for greater alignment with Patients and Payor (non-pharma) groups.
DOI: 10.6084/m9.figshare.14457440.v1
title: Direct and indirect economic burden associated with rotator cuff tears and repairs in the US

description: This retrospective study examined treatment characteristics and the economic burden associated with rotator cuff tears (RCT) and rotator cuff repairs (RCR). Additionally, this study aimed to explore the economic implications associated with delayed surgical intervention. Adult RCT patients meeting eligibility criteria were identified from 1/1/2013–6/30/2017 using the IBM Watson Health MarketScan Commercial database. Patients with incident RCR within 12 months post-index and 12 months continuous enrollment after the RCR date were also analyzed. Early surgery was defined as RCR within 6 months and 1 month from the partial-thickness tear and full-thickness tear diagnoses, respectively. Patient characteristics, all-cause direct costs (plan paid and patient out-of-pocket), RCT-related costs, pre-surgical costs, post-surgical costs, and healthcare resource utilization were reported by RCT type. Attributable indirect costs, absenteeism and short-term disability (STD), were also estimated. 102,488 RCT patients were identified (partial-thickness tears: 46,856 [45.7%]; full-thickness tears: 55,632 [54.3%]). Fifty per cent RCT patients underwent RCR within 12-months of diagnosis. Full-thickness RCT patients had an average total baseline (one year pre-diagnosis) and post-index costs of $17,096 and $32,110, respectively. Similarly, partial thickness patients had baseline costs of $16,385 and post-index costs of $27,017. Mean all-cause annual post-surgery costs were $34,086 for patients with partial-thickness tears and $34,249 for patients with full-thickness tears, of which 40% and 38% of costs were RCT-related, respectively. Productivity losses due to absenteeism and STD in the 12-month post-surgery period averaged $5843 and $4493, respectively, for partial-thickness tear patients and $5770 and $4382, respectively, for full-thickness tear patients. Average additional spending per delayed surgical patient between diagnosis and surgery was $8524 and $3213 (both <i>p</i> &lt;0.001) for partial- and full-thickness tear patients, respectively. This exploratory analysis indicates considerable RCT and RCR economic burden to the healthcare system. High healthcare utilization and costs highlight the importance of efficiently managing patients with RCT diagnosis. Data also suggest that early surgical intervention may be economically beneficial if surgical intervention is anticipated post-RCT.
DOI: 10.6084/m9.figshare.14457440
title: Direct and indirect economic burden associated with rotator cuff tears and repairs in the US

description: This retrospective study examined treatment characteristics and the economic burden associated with rotator cuff tears (RCT) and rotator cuff repairs (RCR). Additionally, this study aimed to explore the economic implications associated with delayed surgical intervention. Adult RCT patients meeting eligibility criteria were identified from 1/1/2013–6/30/2017 using the IBM Watson Health MarketScan Commercial database. Patients with incident RCR within 12 months post-index and 12 months continuous enrollment after the RCR date were also analyzed. Early surgery was defined as RCR within 6 months and 1 month from the partial-thickness tear and full-thickness tear diagnoses, respectively. Patient characteristics, all-cause direct costs (plan paid and patient out-of-pocket), RCT-related costs, pre-surgical costs, post-surgical costs, and healthcare resource utilization were reported by RCT type. Attributable indirect costs, absenteeism and short-term disability (STD), were also estimated. 102,488 RCT patients were identified (partial-thickness tears: 46,856 [45.7%]; full-thickness tears: 55,632 [54.3%]). Fifty per cent RCT patients underwent RCR within 12-months of diagnosis. Full-thickness RCT patients had an average total baseline (one year pre-diagnosis) and post-index costs of $17,096 and $32,110, respectively. Similarly, partial thickness patients had baseline costs of $16,385 and post-index costs of $27,017. Mean all-cause annual post-surgery costs were $34,086 for patients with partial-thickness tears and $34,249 for patients with full-thickness tears, of which 40% and 38% of costs were RCT-related, respectively. Productivity losses due to absenteeism and STD in the 12-month post-surgery period averaged $5843 and $4493, respectively, for partial-thickness tear patients and $5770 and $4382, respectively, for full-thickness tear patients. Average additional spending per delayed surgical patient between diagnosis and surgery was $8524 and $3213 (both <i>p</i> &lt;0.001) for partial- and full-thickness tear patients, respectively. This exploratory analysis indicates considerable RCT and RCR economic burden to the healthcare system. High healthcare utilization and costs highlight the importance of efficiently managing patients with RCT diagnosis. Data also suggest that early surgical intervention may be economically beneficial if surgical intervention is anticipated post-RCT.
DOI: 10.5281/zenodo.3242316
title: Data and code for "Strong plasmon-molecule coupling at the nanoscale revealed by first-principles modeling"

description: The data includes atomic structures, time-dependent dipole moments, and photoabsorption spectra of the systems modeled and analyzed in the article "Strong plasmon-molecule coupling at the nanoscale revealed by first-principles modeling" by Tuomas P. Rossi, Timur Shegai, Paul Erhart, and Tomasz J. Antosiewicz. The input scripts for reproducing the data are also included. The time-dependent density-functional theory calculations use the LCAOTDDFT module of the GPAW code, and the atomic structures are created with the ASE code. See <em>README.md</em> in the archive for a detailed description.