cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5549611.v1
title: Molecular response of gall induction by aphid <i>Schlechtendalia chinensis</i> (Bell) attack on <i>Rhus chinensis</i> Mill

description: Horned gall is named after its shape of irregular diamond, and is induced by the fluid-feeding aphid <i>Schlechtendalia chinensis</i> (Bell) attacks on the leaflets that are located in the branchlets of <i>Rhus chinensis</i> Mill., which is enriched in gallotannin and can be widely used in medicine and the food industry. To explain the molecular mechanism of gall development, we performed transcriptome analysis by Illumina deep sequencing and digital gene expression of four tissues, including galls, leaves that grew on the same branch as the gall taken (GL), leaves from a branch without any gall (LW), and leaves from a tree without any gall (CL). Differentially expressed genes abundantly enriched in the biosynthesis of secondary metabolites, plant–aphid interactions, and plant hormone signal transduction were highly expressed in galls compared with GL and LW. Phytohormone signal transduction, dominated by IAA and ABA, coordinates primary and secondary metabolism and thus induces gall induction and development after attack by aphids. This study provides a theoretical basis for the genetic improvement and processing of gallnut resources.
DOI: 10.6084/m9.figshare.18132525
title: Additional file 20 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 20: Table S17. RNA-seq quality data for three stress experiments.
DOI: 10.6084/m9.figshare.18132535
title: Additional file 3 of Edaravone activates the GDNF/RET neurotrophic signaling pathway and protects mRNA-induced motor neurons from iPS cells

description: Additional file 3: Table S2. Down-regulated genes in control miMNs after edaravone treatment.
DOI: 10.6084/m9.figshare.17084228.v1
title: Additional file 2 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 2: Table S1. List of the 163 ZoAP2ERF genes identified in this study.
DOI: 10.6084/m9.figshare.18132528
title: Additional file 21 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 21: Table S18. Mapping rate of reference genome used for RNA-seq of three stress experiments.
DOI: 10.6084/m9.figshare.17084243.v1
title: Additional file 5 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 5: Table S2. Summary of cis-elements is in the promoter regions of ZoAP2/ERF family genes in ginger.
DOI: 10.6084/m9.figshare.18132537
title: Additional file 24 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 24: Table S21. List of primers used in the qRT-PCR analysis for the selected LchiWRKYs.
DOI: 10.6084/m9.figshare.25232345
title: Supplementary Material for: Less invasive surfactant administration (LISA) compared to intubation surfactant rapid extubation (INSURE) method in preterm neonates - an umbrella review

description: Introduction: In spontaneously breathing neonates, surfactant can be administered via thin catheter while enabling the own breathing (less invasive surfactant administration (LISA)). Alternatively, the neonate is intubated for surfactant delivery (Intubation, Surfactant, Rapid Extubation (INSURE)). Thus, the aim was to provide an overview of the efficacy of the LISA compared to INSURE. 
Methods: We performed an umbrella review of previous meta-analyses including randomized controlled trials. We searched PubMed, Scopus, and Web of Science in July 2023. Two authors screened the search results and systematic reviews with meta-analyses that focused on LISA vs INSURE were included. One author extracted, and another author validated the extracted data. AMSTAR-2 and ROBIS evaluations were performed by two authors independently. 
Results: A total of 9 systematic reviews with meta-analyses were included. The quality according to AMSTAR-2 was high in one, moderate in one, low in three, and critically low in four. According to ROBIS the risk of bias was low in three and high in six of the reviews. LISA was more effective than INSURE in preventing mechanical ventilation (8/8 reviews), death or BPD (4/4 reviews), death (3/9 reviews) and BPD (3/9 reviews). 
Conclusions: All the included systematic reviews and meta-analyses reported LISA to be more effective than INSURE in terms of need for mechanical ventilation and death or BPD. However, the quality of the published systematic reviews has been mostly deficient. Future systematic reviews should focus on reporting quality.
DOI: 10.6084/m9.figshare.16557375.v1
title: Additional file 8 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 8: Table S8. Networks of identified genes.
DOI: 10.23729/97ac4642-b484-4310-a0e1-330f9860e2ca
title: Sansar social virtual reality video corpus

description: This corpus was collected in February 2023 at the LeaF research infrastructure, University of Oulu. The data was collected as a part of the postdoctoral research project “Beyond individual experiences towards social VR” (Research Council of Finland, 2022–2025). 

We invited 11 pairs (altogether 22 participants) to interact in a quasi-experimental setting in the social VR platform Sansar (https://www.sansar.com/). We had built a private collaboration space in Sansar, which resembled an apartment with different furniture and objects laying around. We instructed the pairs to conduct a collaboration task in the space. The task was to play a pair of roommates and furnish the apartment together. 

The participants used HTC Vive Focus 3 head-mounted displays (HMD) and hand-held controllers to interact in VR. They were physically situated in two adjacent rooms so they could hear and see one another only as avatar characters in the virtual space. 

Each pair was video recorded from multiple perspectives using screen capture software and video cameras. We recorded 1) both participants’ first-person perspective to the VR, 2) the researcher’s third-person perspective to the participants in VR, and 3) the participants in their physical environments. 

The corpus includes 9 hours of video recordings as well as detailed written transcripts of the participants’ audible and multimodal conduct captured in the recordings. We use multimodal conversation analysis as the main research method for analyzing the video-recorded interactions. The languages used in the data are English (10 pairs) and Finnish (1 pair). We also collected background information about the participants’ previous experience with VR technology and online gaming. 

The ethical guidelines and criteria of the Finnish National Board for Research Integrity were followed during the data collection. The participants were provided with written information about the study and data protection, and they signed an informed consent for being video recorded for research purposes. Due to the personal data revealed in the video materials (participants’ faces and voices), this material cannot be stored or made public via data repositories.
DOI: 10.6084/m9.figshare.18132546
title: Additional file 2 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 2: Table S2. LchiWRKYs Bayesian Phylogenetic tree.
DOI: 10.6073/pasta/4690107ef7cf3eb83232dbaa96a587b1
title: FCE Redlands 1998 Land Use, Miami-Dade County, South Florida

description: Urban growth models have increasingly been used by planners and policy makers to visualize, organize, understand, and predict urban growth. However, these models reveal a wide disparity in their attention to policy factors. Some urban growth models capture few if any specific policy effects (e.g.,as model variables), while others integrate certain policies but not others. Since zoning policies are the most widely used form of land use control in the United States, their conspicuous absence from so many urban growth models is surprising. This research investigated the impacts of zoning on urban growth by calibrating and simulating a cellular automaton urban growth model, SLEUTH, under two conditions in a South Florida location. The first condition integrated restrictive agricultural zoning into SLEUTH, while the other ignored zoning data. Goodness of fit metrics indicate that including the agricultural zoning data improved model performance. The results further suggest that agricultural zoning has been somewhat successful in retarding urban growth in South Florida. Ignoring zoning information is detrimental to SLEUTH performance in particular, and urban growth modeling in general.
DOI: 10.6084/m9.figshare.14462637.v1
title: Additional file 7 of Transcriptome profiling of immune response to Yersinia ruckeri in spleen of rainbow trout (Oncorhynchus mykiss)

description: Additional file 7: Table S4. The list of immune response-related DEGs identified in this study.
DOI: 10.6084/m9.figshare.17084255
title: Additional file 7 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 7: Table S4. List of the tandem repeat gene pairs of AP2ERF in ginger.
DOI: 10.6084/m9.figshare.14462631.v1
title: Additional file 5 of Transcriptome profiling of immune response to Yersinia ruckeri in spleen of rainbow trout (Oncorhynchus mykiss)

description: Additional file 5: Table S2. Summary of information regarding the annotation of new genes.
DOI: 10.6084/m9.figshare.14462634
title: Additional file 6 of Transcriptome profiling of immune response to Yersinia ruckeri in spleen of rainbow trout (Oncorhynchus mykiss)

description: Additional file 6: Table S3. Information of all the DEGs detected in this study.
DOI: 10.6084/m9.figshare.14462634.v1
title: Additional file 6 of Transcriptome profiling of immune response to Yersinia ruckeri in spleen of rainbow trout (Oncorhynchus mykiss)

description: Additional file 6: Table S3. Information of all the DEGs detected in this study.
DOI: 10.6084/m9.figshare.14462631
title: Additional file 5 of Transcriptome profiling of immune response to Yersinia ruckeri in spleen of rainbow trout (Oncorhynchus mykiss)

description: Additional file 5: Table S2. Summary of information regarding the annotation of new genes.
DOI: 10.6084/m9.figshare.18132601
title: Additional file 2 of Pathological α-synuclein recruits LRRK2 expressing pro-inflammatory monocytes to the brain

description: Additional file 2.
DOI: 10.6084/m9.figshare.14462628
title: Additional file 4 of Transcriptome profiling of immune response to Yersinia ruckeri in spleen of rainbow trout (Oncorhynchus mykiss)

description: Additional file 4: Table S1. Characteristics of RNA-seq data.
DOI: 10.6084/m9.figshare.14462628.v1
title: Additional file 4 of Transcriptome profiling of immune response to Yersinia ruckeri in spleen of rainbow trout (Oncorhynchus mykiss)

description: Additional file 4: Table S1. Characteristics of RNA-seq data.
DOI: 10.6084/m9.figshare.14462637
title: Additional file 7 of Transcriptome profiling of immune response to Yersinia ruckeri in spleen of rainbow trout (Oncorhynchus mykiss)

description: Additional file 7: Table S4. The list of immune response-related DEGs identified in this study.
DOI: 10.6084/m9.figshare.16557336.v1
title: Additional file 11 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 11: Table S11. Comparison of results of main analyses (outcome of both clinically diagnosed AD and AD-by-proxy) with analyses of clinically diagnosed AD outcome and AD-by-proxy outcome.
DOI: 10.6084/m9.figshare.17084180
title: Additional file 11 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 11: Table S5. The lists of ginger and other species AP2ERF synteny gene pairs.
DOI: 10.6084/m9.figshare.16557378
title: Additional file 9 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 9: Table S9. Top 20 disease functional categories of identified genes.
DOI: 10.6084/m9.figshare.19181470
title: Additional file 11 of A pan-cancer analysis of molecular characteristics and oncogenic role of gasdermins

description: Additional file 11: Data S4. The correlation between the expression of GSDM genes and ImmuneScore/StromalScore/EstimateScore.
DOI: 10.6084/m9.figshare.17084195
title: Additional file 14 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 14: Table S8. Expression profile of ZoAP2/ERF family genes response to abiotic stress treatment.
DOI: 10.6084/m9.figshare.17084213
title: Additional file 17 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 17: Figure S9. The primer sequences for qRT-PCR used in this study.
DOI: 10.6084/m9.figshare.14987069.v2
title: Modeling and simulation of cochlear perimodiolar electrode based on composite spring-mass model

description: This paper proposes, a method for the physical modeling of the perimodiolar electrode, particularly for the process of recovering its preset shape with the guide wire drawn out, based on the composite spring-mass model by employing the virtual-volumetric spring inspired from the traditional spring-mass model. Simulation experiments of modeling and virtual insertion of perimodiolar electrode were carried out. The results indicated that the mean and standard deviation of the difference between the local deformation angles of the simulated and measured sets of mass points, (1, 2, 3), (2, 3, 4), …, (13, 14, 15), were 6.34° and 5.98°, respectively. Additionally, the physical model of the perimodiolar electrode can reflect the overall morphological changes of the real perimodiolar electrode.
DOI: 10.6084/m9.figshare.17084186.v1
title: Additional file 12 of Genome-wide investigation of the AP2/ERF gene family in ginger: evolution and expression profiling during development and abiotic stresses

description: Additional file 12: Table S6. Ka/Ks ratio.
DOI: 10.6084/m9.figshare.16557342.v1
title: Additional file 13 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 13. An R script for FOCUS fine-mapping analysis.
DOI: 10.6084/m9.figshare.19181500
title: Additional file 8 of A pan-cancer analysis of molecular characteristics and oncogenic role of gasdermins

description: Additional file 8: Data S1. The correlation between the expression of GSDM family genes and drug sensitivity.
DOI: 10.6084/m9.figshare.16557345.v1
title: Additional file 1 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 1: Table S1.. Internal performance of gene expression genetic prediction models of ten brain tissues.
DOI: 10.6084/m9.figshare.17084087.v1
title: Additional file 1 of The impact of “4 + 7” volume-based drug procurement on the volume, expenditures, and daily costs of antihypertensive drugs in Shenzhen, China: an interrupted time series analysis

description: Additional file 1
DOI: 10.6084/m9.figshare.17084087
title: Additional file 1 of The impact of “4 + 7” volume-based drug procurement on the volume, expenditures, and daily costs of antihypertensive drugs in Shenzhen, China: an interrupted time series analysis

description: Additional file 1
DOI: 10.5519/qd.6491tde7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5400663 records)
DOI: 10.6084/m9.figshare.21275977
title: Additional file 9 of Bioinformatics analysis of diagnostic biomarkers for Alzheimer's disease in peripheral blood based on sex differences and support vector machine algorithm

description: Additional file 9: Supplementary Data 9. Degree, MNC, Radiality, Stress and Closeness were used to screen 8 overlapping hub genes in males.
DOI: 10.6084/m9.figshare.21275956
title: Additional file 2 of Bioinformatics analysis of diagnostic biomarkers for Alzheimer's disease in peripheral blood based on sex differences and support vector machine algorithm

description: Additional file 2: Supplementary Data 2. List of DEGs in males.
DOI: 10.6084/m9.figshare.21275968.v1
title: Additional file 6 of Bioinformatics analysis of diagnostic biomarkers for Alzheimer's disease in peripheral blood based on sex differences and support vector machine algorithm

description: Additional file 6: Supplementary Data 6. GSEA in females.
DOI: 10.15468/dl.ck8565
title: Occurrence Download

description: A dataset containing 20654 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oenothera parviflora L."
 ]
}

 The dataset includes 20654 records from 351 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106979-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25952/fetr-kz94
title: Using crystalline amino acids to supplement broiler chicken requirements in reduced protein diets

description: The first experiment investigated the role of the non-essential amino acid, glycine, in broiler performance when fed reduced protein wheat-based diets. An industry-standard protein diet and three reduced protein diets with and without glycine supplementation were fed to male broilers from day 10 of age. Glycine was supplemented to equal that in the standard protein diet at 0.712 and 0.648% in grower and finisher diets respectively. Performance, water intake and amino acid digestibility were measured. Reducing crude protein reduced performance and water intake and increased nitrogen digestibility. Glycine supplementation increased performance and water intake, however, no effect was observed on nitrogen digestibility. When fed reduced protein diets, crystalline amino acids, including glycine, can be supplemented to maintain performance like that observed in standard protein diets.
description: The first experiment investigated the role of the non-essential amino acid, glycine, in broiler performance when fed reduced protein wheat-based diets. An industry-standard protein diet and three reduced protein diets with and without glycine supplementation were fed to male broilers from day 10 of age. Glycine was supplemented to equal that in the standard protein diet at 0.712 and 0.648% in grower and finisher diets respectively. Performance, water intake and amino acid digestibility were measured. Reducing crude protein reduced performance and water intake and increased nitrogen digestibility. Glycine supplementation increased performance and water intake, however, no effect was observed on nitrogen digestibility. When fed reduced protein diets, crystalline amino acids, including glycine, can be supplemented to maintain performance like that observed in standard protein diets.
DOI: 10.15468/dl.tb7waf
title: Occurrence Download

description: A dataset containing 16101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oenothera rosea Aiton"
 ]
}

 The dataset includes 16101 records from 499 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106980-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bejh4z
title: Occurrence Download

description: A dataset containing 1695 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oenothera tetraptera Cav."
 ]
}

 The dataset includes 1695 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106981-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xeq73c
title: Occurrence Download

description: A dataset containing 60399144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "Country is United States of America",
 "GadmGid is USA.5_1",
 "Year 2010-2020"
 ]
}

 The dataset includes 60399144 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106971-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p57snx
title: Occurrence Download

description: A dataset containing 211186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Larus cachinnans Pallas, 1811",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 211186 records from 283 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106973-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.