cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3667714
title: PsPM-VIS: SCR, ECG, respiration and eyetracker measurements in a delay fear conditioning task with visual CS and electrical US

description: This dataset consists of a three-block experiment conducted with 29 healthy unmedicated participants (17 females and 12 males aged 25.3 +/- 3.7). The experiment contains a classical (Pavlovian) discriminant delay fear conditioning test. CSs are 2 full-screen fractals of approximate brightness, contrast, and spatial frequency. US is a train of electric square pulses delivered with a constant current stimulator on participants' dominant forearm through a pin-cathod/ring-anode configuration. SOA between the CS and US is 3.5 s. The first 2 blocks are fear acquisition, with 15 CS+US+, 15 CS+US-, and 30 CS- in each block, and the last block is an extinction phase with 20 CS- and 20 CS+ trials without US delivery. The order of trials in each block was randomized. No fixation cross was presented during CS. ITI is randomly determined on each trial to be an integer between 7 - 11 s. During ITI, a black fixation cross was presented in the center of a grey background (RGB 0.7, 0.7, 0.7). The blocks were recorded on the same day with a self-paced break. For all three blocks this dataset contains skin conductance responses (SCR), electrocardyogram (ECG), respiration, pupil size (PSR), and gaze coordinates measurements.
description: This work was supported by: - the University of Zurich's Clinical Research Priority Program for the CRPP Synapse and Trauma - the European Research Council Consolidator Grant 816564 "ActionContraThreat" -the Wellcome Centre for Human Neuroimaging, funded by strategic grant from the Wellcome Trust 205103/Z/16/Z
DOI: 10.5281/zenodo.774175
title: PsPM-SCRV6: Skin conductance responses to pain by electric stimulation

description: This dataset includes skin conductance response (SCR) measurements for each of 20 healthy unmedicated participants (10 males and 10 females aged 21.8+/-3.3 years) in response to 10 discomforting electric shocks. Stimuli are 0.5ms wide square current pulse repeated at 500Hz for 100ms. Amplitude is varied (mean +/- SD: 0.78mA +/- 0.43mA). ITI is selected randomly on each trial from 29s, 34s or 39s.
description: See the readme file for more detail. Data are stored as .mat files for use with MATLAB in a format readable by the PsPM toolbox (pspm.sourceforge.net). This research was supported by Wellcome Trust grants 098362/Z/12/Z and 098362/Z/12/Z, and Swiss National Science Foundation grant PA00A-117384.
DOI: 10.5281/zenodo.4287111
title: PsPM-RRM1-2: SCR, ECG, respiration and eye tracker measurements in response to electric stimulation or visual targets

description: This dataset includes skin conductance response (SCR), electrocardiogram (ECG), respiration and eye tracker (including pupillometry) measurements for each of 29 healthy unmedicated participants (7 males and 22 females aged 23.5 +/- 3.6 years) in response to 10 discomforting electric stimulations to the forearm (RRM1) or 10 visual targets in a visual detection task (RRM2). The sample partly overlaps with data set PsPM-FR. Some participants did not take part in RRM1 or RRM2 such that there are 25 recordings for RRM1 and 26 recordings for RRM2. Electric shock stimuli are 0.2 ms wide square current pulse repeated at 500 Hz for 500 ms and individually adjusted amplitude just below the pain threshold. Visual stimuli are red crosses (+) embedded in a white digit stream; each stimulus is presented during 200 ms and separated by a 800 ms blank interval. ITI is selected randomly on each trial from 40 s, 45 s or 50 s. A baseline period with distractors but no targets concludes experiment RRM2. (This is in contrast to the methods description in Bach et al. (2016), according to which the baseline period was randomly either in the beginning or at the end of the experiment. This discrepancy was caused by an error in the code that controlled the experiment presentation.)
description: See the readme file for more detail. This version fixes incorrect SCR scaling in one participant.
DOI: 10.5281/zenodo.3405225
title: PsPM-RRM1-2: SCR, ECG, respiration and eye tracker measurements in response to electric stimulation or visual targets

description: This dataset includes skin conductance response (SCR), electrocardiogram (ECG), respiration and eye tracker (including pupillometry) measurements for each of 29 healthy unmedicated participants (7 males and 22 females aged 23.5 +/- 3.6 years) in response to 10 discomforting electric stimulations to the forearm (RRM1) or 10 visual targets in a visual detection task (RRM2). The sample partly overlaps with data set PsPM-FR. Some participants did not take part in RRM1 or RRM2 such that there are 25 recordings for RRM1 and 26 recordings for RRM2. Electric shock stimuli are 0.2 ms wide square current pulse repeated at 500 Hz for 500 ms and individually adjusted amplitude just below the pain threshold. Visual stimuli are red crosses (+) embedded in a white digit stream; each stimulus is presented during 200 ms and separated by a 800 ms blank interval. ITI is selected randomly on each trial from 40 s, 45 s or 50 s. A baseline period with distractors but no targets concludes experiment RRM2. (This is in contrast to the methods description in Bach et al. (2016), according to which the baseline period was randomly either in the beginning or at the end of the experiment. This discrepancy was caused by an error in the code that controlled the experiment presentation.)
description: See the readme file for more detail. This version fixes incorrect SCR scaling in one participant.
DOI: 10.5281/zenodo.4147044
title: PsPM-EWO: Eye tracker (including pupillometry) measurements from emotional-words tasks

description: This dataset includes eye tracker (including pupillometry) measurements for 37 healthy unmedicated participants (25 females and 12 males, age range: 18 - 34 years, mean age: 26.2 +/- 4.7 years) participating in an emotional-words task. In each session, participants were presented with 50 neutral and 50 negative five-letter nouns from the Berlin Affective Word List Reloaded (Võ et al., 2009). Also included are task information, keypress responses, keypress response times.
description: Data are stored as .mat files for use with MATLAB (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm). All Matlab files are saved in MATLAB 9.7 (R2019b) format.
DOI: 10.5281/zenodo.4147043
title: PsPM-EWO: Eye tracker (including pupillometry) measurements from emotional-words tasks

description: This dataset includes eye tracker (including pupillometry) measurements for 37 healthy unmedicated participants (25 females and 12 males, age range: 18 - 34 years, mean age: 26.2 +/- 4.7 years) participating in an emotional-words task. In each session, participants were presented with 50 neutral and 50 negative five-letter nouns from the Berlin Affective Word List Reloaded (Võ et al., 2009). Also included are task information, keypress responses, keypress response times.
description: Data are stored as .mat files for use with MATLAB (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm). All Matlab files are saved in MATLAB 9.7 (R2019b) format.
DOI: 10.5281/zenodo.4115079
title: PsPM-SCBD: Skin conductance response from a delay fear conditioning task with auditory CS (monophones/triads)

description: This dataset includes skin conductance response (SCR) measurements for 10 healthy unmedicated participants (5 females and 5 males, age range: 18 - 33 years, mean age: 24.1 +/- 4.7) participating in a classical (Pavlovian) discriminant delay fear conditioning experiment with auditory CS. Also included are CS and US information, and ratings of CS after the experiment. Simple and complex CS were simple sine tones (4 s), and triads in root position or in first inversion, respectively. US was a train of electric square pulses delivered with a constant current stimulator (Digitimer DS7A, Digitimer, Welwyn Garden City, UK) on participants' dominant forearm through a pin-cathode/ring-anode configuration. After the fear conditioning task, participants were first asked to report their subjective estimate of how likely they were to receive a shock after a given CS in the future, on a visual analogue scale of 0-100. Then they were asked to rate pairs of CS sounds with respect to which of the two stimuli they liked less.
description: This work was funded by the University of Zurich and the Swiss National Science Foundation [320030 1449586/1]. The Wellcome Trust Centre for Neuroimaging is supported by core funding from the Wellcome Trust [091593/Z/10/Z]. Data are stored as .mat files for use with MATLAB (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm). All Matlab files are saved in MATLAB 9.7 (R2019b) format.
DOI: 10.5281/zenodo.3900169
title: PsPM-CogSF: SCR, ECG and respiration measurements during mental arithmetic, attention, and rest

description: This dataset includes skin conductance, ECG and respiration measurements for 20 healthy unmedicated participants (9 males and 11 females aged 23.68 +/- 2.94 years, gender information misprinted in Bach & Staib 2015) undergoing two 120-s periods of resting, attention, or mental arithmetic (adding numbers). Selection and order of the two periods is contained as group information. An event marker is recorded at the beginning and the end of each period.
description: Data are stored as .mat files for use with MATLAB (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm). All Matlab files are saved in MATLAB 9.4 (R2018a) format.
DOI: 10.5281/zenodo.3900168
title: PsPM-CogSF: SCR, ECG and respiration measurements during mental arithmetic, attention, and rest

description: This dataset includes skin conductance, ECG and respiration measurements for 20 healthy unmedicated participants (9 males and 11 females aged 23.68 +/- 2.94 years, gender information misprinted in Bach & Staib 2015) undergoing two 120-s periods of resting, attention, or mental arithmetic (adding numbers). Selection and order of the two periods is contained as group information. An event marker is recorded at the beginning and the end of each period.
description: Data are stored as .mat files for use with MATLAB (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm). All Matlab files are saved in MATLAB 9.4 (R2018a) format.
DOI: 10.5281/zenodo.4045657
title: PsPM-SC2F: SCR, ECG, PPU and respiration measurements from a delay fear conditioning task with auditory CS, performed during MRI scanning

description: This dataset includes skin conductance response (SCR), electrocardiogram (ECG), peripheral pulse unit (PPU) and respiration measurements for 18 healthy unmedicated participants (9 females and 9 males, age range: 18 - 34 years, mean age: 24.8 +/- 4.2) participating in a classical (Pavlovian) discriminant delay fear conditioning experiment with auditory CS, during MRI scanning. Also included are CS and US information, and ratings of CS after the experiment. Simple and complex CS were simple sine tone (4 s), and up or down frequency sweep sounds, respectively. US was a train of electric square pulses delivered with a constant current stimulator (Digitimer DS7A, Digitimer, Welwyn Garden City, UK) on participants' dominant forearm through a pin-cathode/ring-anode configuration. After the fear conditioning task, participants were first asked to report their subjective estimate of how likely they were to receive a shock after a given CS in the future, on a visual analogue scale of 0-100. Then they were asked to rate pairs of CS sounds with respect to which of the two stimuli they liked less.
description: Data are stored as .mat files for use with MATLAB (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm). All Matlab files are saved in MATLAB 9.7 (R2019b) format.
DOI: 10.5281/zenodo.4045656
title: PsPM-SC2F: SCR, ECG, PPU and respiration measurements from a delay fear conditioning task with auditory CS, performed during MRI scanning

description: This dataset includes skin conductance response (SCR), electrocardiogram (ECG), peripheral pulse unit (PPU) and respiration measurements for 18 healthy unmedicated participants (9 females and 9 males, age range: 18 - 34 years, mean age: 24.8 +/- 4.2) participating in a classical (Pavlovian) discriminant delay fear conditioning experiment with auditory CS, during MRI scanning. Also included are CS and US information, and ratings of CS after the experiment. Simple and complex CS were simple sine tone (4 s), and up or down frequency sweep sounds, respectively. US was a train of electric square pulses delivered with a constant current stimulator (Digitimer DS7A, Digitimer, Welwyn Garden City, UK) on participants' dominant forearm through a pin-cathode/ring-anode configuration. After the fear conditioning task, participants were first asked to report their subjective estimate of how likely they were to receive a shock after a given CS in the future, on a visual analogue scale of 0-100. Then they were asked to rate pairs of CS sounds with respect to which of the two stimuli they liked less.
description: Data are stored as .mat files for use with MATLAB (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm). All Matlab files are saved in MATLAB 9.7 (R2019b) format.
DOI: 10.18112/openneuro.ds003604.v1.0.4
title: A longitudinal neuroimaging dataset on language processing in children ages 5, 7, and 9 years old
DOI: 10.6084/m9.figshare.16944001.v1
title: Training data for OSSARA Model

description: Replication dataset for IEEE Software Journal Special Issue Submission, OSS-Risk: Abandonment Risk Assessment for Embedded Open Source Components.
DOI: 10.6084/m9.figshare.16944001
title: Training data for OSSARA Model

description: Replication dataset for IEEE Software Journal Special Issue Submission, OSS-Risk: Abandonment Risk Assessment for Embedded Open Source Components.
DOI: 10.3886/e153841
title: Toward Digital Picture Books for a New Generation of Emergent Readers

description: The study tests the efficacy of a new sort of digital picture book. It includes camera movements to guide children's visual attention through the pictures and the possibility to control page-turning and the pace at which the camera moves through pictures. There were 56 participants (Mage = 60.34 months, SD = 6.24) randomly assigned to three conditions: still images, camera movements (no control over pace), and camera movements (control over pace). For the 50% of children least proficient in language skills, sparingly adding well-chosen camera movements to the illustrations helps children understand the story. In addition, the camera movements' effect can be enhanced by enabling control over the pace at which new information appears. Particularly the 50% lowest-language proficiency children benefited from camera movements and spending more time processing information.
description: no weights were applied
description: Response Rates: The final sample consisted of the first 60 child participants for whom the parent returned the consent form allowing their child to participate in the study. During the experiment, three children dropped out because they were absent from one of the testing days. One child refused to complete the tests. Thus the final analysis related to 56 children.
description: Presence of Common Scales: Scales were book-specific and created by the researchers.
description: Stratified for classroom and gender, the researchers assigned each participant randomly to one of the three conditions.
description: Kindergarten children (4-5 years) from two schools located in Amsterdam involving low- and high-educated families with a Western or non-Western background. Smallest Geographic Unit: see article
description: coded on-site observation; cognitive assessment test; no special notes available
DOI: 10.3886/e153841v1
title: Toward Digital Picture Books for a New Generation of Emergent Readers

description: The study tests the efficacy of a new sort of digital picture book. It includes camera movements to guide children's visual attention through the pictures and the possibility to control page-turning and the pace at which the camera moves through pictures. There were 56 participants (Mage = 60.34 months, SD = 6.24) randomly assigned to three conditions: still images, camera movements (no control over pace), and camera movements (control over pace). For the 50% of children least proficient in language skills, sparingly adding well-chosen camera movements to the illustrations helps children understand the story. In addition, the camera movements' effect can be enhanced by enabling control over the pace at which new information appears. Particularly the 50% lowest-language proficiency children benefited from camera movements and spending more time processing information.
description: no weights were applied
description: Response Rates: The final sample consisted of the first 60 child participants for whom the parent returned the consent form allowing their child to participate in the study. During the experiment, three children dropped out because they were absent from one of the testing days. One child refused to complete the tests. Thus the final analysis related to 56 children.
description: Presence of Common Scales: Scales were book-specific and created by the researchers.
description: Stratified for classroom and gender, the researchers assigned each participant randomly to one of the three conditions.
description: Kindergarten children (4-5 years) from two schools located in Amsterdam involving low- and high-educated families with a Western or non-Western background. Smallest Geographic Unit: see article
description: coded on-site observation; cognitive assessment test; no special notes available
DOI: 10.6084/m9.figshare.14784678
title: Vulliard2021_BioProfilingJl

description: # High-content imaging chemical screen in U-2-OS<br><br>This dataset is described in the manuscript untitled "BioProfiling.jl: Profiling biological perturbations with high-content imaging in single cells and heterogeneous populations" by Vulliard _et al_ (DOI: [10.1101/2021.06.18.448961](https://doi.org/10.1101/2021.06.18.448961).<br>The following files are made available:<br><br>* `README.md`: description of the dataset.<br>* `750CellsPerWell.zip`: raw fluorescent images (TIFF) for a 384-well drug plate seeded with 750 cells per well.<br>* `1500CellsPerWell.zip`: raw fluorescent images (TIFF) for a 384-well drug plate seeded with 1500 cells per well.<br>* `Batch_data_u2os_drug.cpproj`: CellProfiler 3.1.8 pipeline used to analyse the images.<br>* `data.zip`: morphological measurements from CellProfiler per cell for each plate and plate layout. Necessary input to reproduce our [example analyses](https://github.com/menchelab/BioProfilingNotebooks).* `IntermediateResults.zip`: files generated in the [example analyses](https://github.com/menchelab/BioProfilingNotebooks).that are not required but helpful to avoid rerunning all scripts in order.<br><br>The preparation of the drug plates is described more precisely in the manuscript.
DOI: 10.6084/m9.figshare.14784678.v1
title: Vulliard2021_BioProfilingJl

description: # High-content imaging chemical screen in U-2-OS<br><br>This dataset is described in the manuscript untitled "BioProfiling.jl: Profiling biological perturbations with high-content imaging in single cells and heterogeneous populations" by Vulliard _et al_ (DOI: [10.1101/2021.06.18.448961](https://doi.org/10.1101/2021.06.18.448961).<br>The following files are made available:<br><br>* `README.md`: description of the dataset.<br>* `750CellsPerWell.zip`: raw fluorescent images (TIFF) for a 384-well drug plate seeded with 750 cells per well.<br>* `1500CellsPerWell.zip`: raw fluorescent images (TIFF) for a 384-well drug plate seeded with 1500 cells per well.<br>* `Batch_data_u2os_drug.cpproj`: CellProfiler 3.1.8 pipeline used to analyse the images.<br>* `data.zip`: morphological measurements from CellProfiler per cell for each plate and plate layout. Necessary input to reproduce our [example analyses](https://github.com/menchelab/BioProfilingNotebooks).<br><br>The preparation of the drug plates is described more precisely in the manuscript.
DOI: 10.6084/m9.figshare.13076813.v1
title: Interviews on Technical Excellence

description: Interviews with agile practitioners on the topic of Technical Excellence.
DOI: 10.5281/zenodo.5648435
title: Implementación de un dataset de referencias bibliográficas biomédicas: caso de estudio del gen de fusión TMPRSS2:ERG

description: This dataset is obtained from a web-scraper with results of the query <em>TMPRSS2:ERG </em>in pubmed bibliography database. The dataset consist on an excel file with 915 references including: authors, pubmed id, title, short citation, long citation, link to the url, abstract, DOI and journal of publication. This data is obtained with a web scraper coded in python for the first practice of the asignature M2.851 - Tipología y ciclo de vida de los datos of the Master Degree in Data Science of the UOC.
DOI: 10.5281/zenodo.5648434
title: Implementación de un dataset de referencias bibliográficas biomédicas: caso de estudio del gen de fusión TMPRSS2:ERG

description: This dataset is obtained from a web-scraper with results of the query <em>TMPRSS2:ERG </em>in pubmed bibliography database. The dataset consist on an excel file with 915 references including: authors, pubmed id, title, short citation, long citation, link to the url, abstract, DOI and journal of publication. This data is obtained with a web scraper coded in python for the first practice of the asignature M2.851 - Tipología y ciclo de vida de los datos of the Master Degree in Data Science of the UOC.
DOI: 10.6084/m9.figshare.13076813.v2
title: Interviews on Technical Excellence

description: Interviews with agile practitioners on the topic of Technical Excellence.
DOI: 10.17894/ucph.89589f25-64ed-47c9-a5db-f7cc4252efd2
title: Choice experiment data on rhino horn consumers
DOI: 10.25934/pr00000253.0
title: Available IPD datapackage for study 'A Randomized, Double-blind, Multi-center, Placebo-controlled, Cross-over Study to Determine the Consistency of Response for Trexima* (Sumatriptan 85mg/Naproxen Sodium 500mg) Administered During the Mild Pain Phase for the Acute Treatment of Multiple Migraine Attacks (*Treximet)'

description: The purpose of this study is to determine the consistency of response for Treximet (formerly known as Trexima) when treating four acute migraine attacks at the mild pain phase and within 1 hour of onset of head pain.
DOI: 10.5281/zenodo.5651077
title: INTRADAY PRICE GAINERS

description: Dataset about intraday price gainers and features obtained from Yahoo Finance.
DOI: 10.5281/zenodo.5651076
title: INTRADAY PRICE GAINERS

description: Dataset about intraday price gainers and features obtained from Yahoo Finance.
DOI: 10.6084/m9.figshare.14500374
title: Disgust sensitivity is negatively associated with immune system activity in early pregnancy: Implications for obstetrical care

description: This study is a part of a larger prospective longitudinal project focusing on maternal emotional status in pregnancy and its biological correlates. The sample consisted of 78 pregnant women who were recruited between the 4<sup>th</sup> and 12<sup>th</sup> weeks of pregnancy. They completed a background questionnaire and questionnaires related to disgust sensitivity (DS-R) and nausea and vomiting (Rhodes index). Dataset also includes cytokine concentrations analyzed from blood samples.