cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.teswfd
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Orthocarpus tenuifolius (Pursh) Benth.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 55 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012960-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/sxfdf37wp4
title: Macroplastic accumulation in roadside ditches of the Finger Lakes region dataset

description: This dataset documents individual macroplastics found in roadside ditches in Tompkins County, New York. Analysis has been completed on accumulation rates by piece and mass of macroplastics across land uses, COVID-19 conditions, and traffic gradients for the sampling sites (Pietz et al., 2021). Plastic type analysis (according to RIC classification) was also conducted across land uses and COVID-19 conditions. Twelve ditches were sampled, three each in agricultural, commercial, forested, and commercial land uses.  On a piece basis, we found significant reductions in ditch macroplastic accumulation during COVID-19 as compared withe pre-COVID-19 samples. Commercial sites accumulated the most macroplastics, and were also characterized by highest traffic rates. Type 4 plastics (e.g. bags, wrappers, thin films) were the most prevalent macroplastics found across all land uses.  

Sampling round 0 indicates data of initial clearing of all ditches to establish a zero litter baseline from which to calculate accumulations.
DOI: 10.6084/m9.figshare.24162135.v1
title: Raw interactions (raw_interactions.csv)

description: Raw interactions represent each event performed by an user when interacting with an element of the machine, with their corresponding timestamp
DOI: 10.6084/m9.figshare.6527714.v1
title: Melanoma gene expression data

description: microarray data for melanoma
DOI: 10.6084/m9.figshare.13056512.v1
title: corn leaf number images and annotations

description: <b>corn_leaf_number.csv</b>The leaf number annotation file in tab separated csv format includes leaf number for each image in corn image dataset. <br><b>1st column</b>: experiment from which the image was generated. 'corn_exp1' was conducted in 2018 and 'corn_exp23' was conducted in 2019.<br><b>2nd column</b>: image filename. Taking '402-073-N1-WW-1_2019-05-02_09-50-30.977_Vis_SV_0.Crp.jpg' as an example, '402-073-N1-WW-1' is the plant identifier in the greenhouse; '2019-05-02' is the imaging date following yyyy-mm-dd format; '09-50-30.977' is the imaging time in hh-mm-ss format; 'Vis_SV_0' indicates the image was photographed in the viewing angle of 0; 'Crp.jpg' indicates the image has been cropped by removing imaging chamber frames and the bottom pot part. <br><b>3rd column</b>: the genotype name.<br><b>4th column</b>: total leaves counted in the image<br><b>5th column</b>: the viewing types. 'front' indicates the leaf phyllotaxy is nearly perpendicular with the line between the camera and the center of the stalk so most of leaves were clearly presented. In contrast, some leaves were occluded in the rest eight images that were treated as 'side' viewing images.<br><b>corn_leaf_number.tar</b>The image folder includes all 122,290 generated corn images. Information including leaf number for each image can be found in the corresponding csv file.<br>
DOI: 10.17632/dmjfztbc4y
title: Replication package for “A Multifactor Perspective on Volatility-Managed Portfolios”

description: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Replication files for ``A Multifactor Perspective on Volatility-Managed Portfolios''
by Victor DeMiguel, Alberto Martin-Utrera, and Raman Uppal. 
Forthcoming in The Journal of Finance
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
DOI: 10.17632/jnp4jn3s9z
title: Quantitative Description of Chloride Ingress in Concrete Using Machine Learning Algorithms: Dataset and Program

description: The primary objective of the developed executable application is to provide the distribution of chloride content as a function of space and time. 
The dataset has been gathered from a variety of experimental tests in the literature.
DOI: 10.17632/m5d7kh4r8y
title: Data for: Ecological momentary assessment of mood and physical activity in people with depression

description: Processed paired accelerometry and mood data from the "ecological momentary assessment of mood and physical activity in people with depression" study.
DOI: 10.17632/p5jv2br9dm
title: acute kidney injury in MIMIC

description: we only included the data from the first ICU admission of each adult patients. And we excluded patients if who 1) stayed in ICU less than 24 hours, 2) missed key data (serum creatinine, urine output, neutrophil, lymphocyte or platelet) and 3) without AKI. The identification of AKI was based on the Kidney Disease: Improving Global Outcomes (KDIGO) guideline: urine output less than 0.5 ml/kg/hour for 6 hours, or serum creatinine (SCr) increases ≥0.3 mg/dl within 48 hours or increases ≥1.5 times baseline value within 7 days. Demographic information included age, sex, ethnicity, care unit and body mass index (BMI). Laboratory measurements included leukocyte, neutrophil, lymphocyte, erythrocyte, hemoglobin (Hb), red cell distribution width (RDW), platelet, blood glucose, SCr, blood urea nitrogen (BUN), serum sodium, serum potassium, serum chloride, serum pH, bicarbonate, partial pressure of oxygen (PO2) and partial pressure of carbon dioxide (PCO2) over the first 24 hours into the ICU. And Sequential Organ Failure Assessment (SOFA) score, Simplified Acute Physiology Score II (SAPSII) and comorbidity were also extracted over the first 24 hours.
DOI: 10.17632/48t5pww44k
title: ECOD: Employee Carpooling Optimization Dataset

description: The Employee Carpooling Optimization Dataset (ECOD) contains two synthetic datasets designed for evaluating multi-objective optimization approaches in the context of employee carpooling. The datasets simulate realistic commuting scenarios by defining drivers, passengers, and their attributes, along with distance and travel time matrices.
Data were generated using PyMC for probabilistic modeling of user attributes and OSMnx for street network visualization and shortest path calculations. Each dataset includes:
- Driver data (ID, location, available seats, travel preferences, and route deviations)
- Passenger data (ID, pickup locations, and driver preferences)
- Distance and travel time matrices for drivers and passengers
These datasets are intended to facilitate research on carpooling optimization, enabling reproducibility and benchmarking against alternative solutions.
DOI: 10.17632/hr7y3h7dsz
title: Phenylalanine-to-tyrosine ratio in assessment of tetrahydrobiopterin responsiveness in hyperphenylalaninemia

description: Following an original research paper by Zerjav Tansek et al., published in 2012 (doi: 10.1016/j.ymgme.2012.07.010), we performed a post-hoc analysis of the data on the role of phenylalanine-to-tyrosine ratio in the assessment of the tetrahydrobiopterine (BH4) responsiveness in patients with hyperphenylalaninemia. At the time of the original submission, phenylalanine-to-tyrosine ratios were not reported or analyzed. Due to the gaining role of this ratio, we share with the scientific community the data on tyrosine and phenylalanine-to-tyrosine ratios in assessment of BH4-responsiveness.

Methods
All patients received 2 g/kg body weight of protein for the time of the assessment (four days prior and one day after BH4-loading). Blood samples were taken four (-96h), three (-72h), two (-48h), one (-24h) and 16h prior to BH4 administration and 8 and 24h after BH4. Blood samples were smeared on to a special filter paper and analyzed by tandem mass spectrometry. BH4-responders were defined when the reduction of blood phenylalanine was ≥30% 24h after BH4 administration. The data was obtained from the patients' Electronic Health Records at the University Children's Hospital, University Medical Centre.

Findings
Phenylalanine-to-tyrosine ratio can be used as a parameter for predicting tetrahydrobiopterine response in patients with hyperphenylalaninemia.
DOI: 10.17632/kxtc6zw6cd
title: SAMPO80: Minicomputer program for gamma spectrum analysis with nuclide identification

description: Title of program: SAMPO80 Catalogue Id: ABQO_v1_0 Nature of problem Gamma spectrum analysis with nuclide identification. ADAPTATION SUMMARY: Vol:Year:Page 24:1981:11 "0001PDP-11 VERSION OF SAMPO80" "SAMPO80: minicomputer program for gamma spectrum analysis with nuclide identification." M.J. Koskelo; P.A. Aarnio; J.T. Routti Note: adaptation instructions are contained in source code Versions of this program held in the CPC repository in Mendeley Data ABQO_v1_0; SAMPO80; 10.1016/0010-4655(81)90104-1 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/tk4gc8z7y4
title: SCIENTOMETRIC ANALYSIS OF GLOBAL RESEARCH OUTPUT IN ROBOTIC GYNECOLOGIC SURGERY 

description: Scientometric data for global research output in robotic gynecologic surgery
DOI: 10.17632/xncfj4mrmp
title: Sonic log data extracted from exploration wells in the ViDEPI project (offshore the Apulia, southern Italy)

description: Twelve files have been obtained after the extraction of data from raster images (PDF format) of as many sonic log graphs of exploration wells. The files data refer to the exploration wells located in the Adriatic Sea offshore the Apulia, whose raster images of sonic logs are public within the ViDEPI Project (www.videpi.com) of the Ministry for the Economic Development of the Italian Government. Each file is composed of two columns of data A and B, that are interval transit time Δt [µs/ft] and depth [m], respectively. Therefore, a total of 18396 pairs of Δt-depth data have been extracted. The pair of Δt-depth values resulted in CSV file format for the sonic logs of each of the following exploration wells: Branzino-1, Chiara-1, Cristina-1, Famoso-1, Giove-1, Giove-2, Grazia-1, Grifone-1, Medusa-1, Sabrina-1, Simona-1, and Sparviero-1bis.
As known, the sonic log is a Δt-depth diagram, where Δt is the interval transit time; the unit of measurement of Δt is µs/ft (µs = microseconds, ft = feet), and that of the depth is m (m = meters). For the interpretation of the seismic profiles, it is important to distinguish the net variations of Δt, that are related to sudden variations of acoustic impedance, which in turn depends by lithostratigraphic features. It is worth mentioning that for each lithostratigraphic succession the calculation of the (i) average interval transit time easily allows the obtaining of the (ii) seismic P-waves average velocity: the latter is the reverse of the first. The unit of measurement of seismic P-waves average velocity, which is thus ft/µs, can be converted in m/s (m = meters, s = seconds), taking into account that µs = 10-6 s, and ft = 0.3048 m.
The data are important for geologists who interpret the reflection seismic profiles located in the Adriatic Sea, chiefly offshore the Apulia; the interpreters of the seismic profiles placed in the adjacent offshore areas, i.e., the Ionian Sea, can benefit from the data making appropriate correlations. Furthermore, the data can be helpful also for seismological purposes around the Apulia.
DOI: 10.17632/3k6zwrktsd
title: Data from: Fire from policy, human interventions, or biophysical factors? Temporal–spatial patterns of forest fire in southwestern China

description: Xiong, Q. L., Luo, X.J., Xiao, Y., Liang, P.H., Sun, H., Pan, K.W., Wang, L.X., Li, L.J., Pang, X.Y., 2020. Data from: Fire from policy, human interventions, or biophysical factors? temporal–spatial patterns of forest fire in southwestern China. Mendeley Data Repository. https://doi.org/10.17632/3k6zwrktsd.2
DOI: 10.17632/3wg6kztvvd
title: Human iPSC-derived neural stem cells displaying radial glia signature exhibit long-term safety in mice

description: The dataset includes the raw data of graphs shown in figures 1, 2, 3, 5, 6, and 7 and in supplementary figures 1, 2, 3, 4, 5, 7, and 8 of the paper: Human iPSC-derived neural stem cells displaying radial glia signature exhibit long-term safety in mice. Luciani M, Garsia C, Beretta S, Cifola I, Peano C, Merelli I, Petiti L, Miccio A, Meneghini V, Gritti A. Nat Commun. 2024 Nov 1;15(1):9433. doi: 10.1038/s41467-024-53613-7. PMID: 39487141
The bulk RNA-seq, SREBF1-deficient RNA-seq, and ChIP-seq data generated in this study have been deposited at GEO under accession number GSE239446. The single-cell RNA-seq data generated in this study have been deposited at GEO under accession number GSE238206. The processed RNA-seq, ChIP-seq, and scRNA-seq data (list of DEGs and GO terms) are available in Supplementary Data 1-4 files.

Human induced pluripotent stem cell-derived neural stem/progenitor cells (hiPSC-NSCs) hold promise for treating neurodegenerative and demyelinating disorders. However, comprehensive studies on their identity and safety remain limited. In this study, we demonstrate that hiPSC-NSCs adopt a radial glia-associated signature, sharing key epigenetic and transcriptional characteristics with human fetal neural stem cells (hfNSCs) while exhibiting divergent profiles from glioblastoma stem cells. Long-term transplantation studies in mice showed robust and stable engraftment of hiPSC-NSCs, with predominant differentiation into glial cells and no evidence of tumor formation. Additionally, we identified the Sterol Regulatory Element Binding Transcription Factor 1 (SREBF1) as a regulator of astroglial differentiation in hiPSC-NSCs. These findings provide valuable transcriptional and epigenetic reference datasets to prospectively define the maturation stage of NSCs derived from different hiPSC sources and demonstrate the long-term safety of hiPSC-NSCs, reinforcing their potential as a viable alternative to hfNSCs for clinical applications.
DOI: 10.6084/m9.figshare.28022915.v1
title: The Influence of Personality Traits on Impulse Consumption:The Sequence Mediation of Family and Self-Control

description: The study utilized a structured questionnaire to collect data on demographic characteristics, psychological traits, and behavioral tendencies.
DOI: 10.17632/bdy4hr5thh
title: Emergence of Janus kinase inhibitors led to increase in proportion of severe alopecia areata patients receiving treatment: A retrospective cohort study. JAAD. 2024.

description: Supplemental tables and results.
DOI: 10.17632/tm97scgg94
title: Readability of Online Dermatology Patient Education Resources

description: Here we provide the data that was used for our health literacy project assessing the readability of various online resources used to educate patients about common dermatological conditions. Included is a spreadsheet of the raw data we collected via 'Readable' and links to all of the individual articles used in the data collection process. The second spreadsheet organizes the results of our data after analysis with various bio-statistical measures.
DOI: 10.17632/rztdvh4psy
title: TILAFeed: A bio-based inventory for circular nutrients management and achieving bioeconomy in future aquaponics

description: Contains main database file and its dependencies
DOI: 10.6084/m9.figshare.23508453.v1
title: OIMHS dataset

description: OIMHS dataset consists of 3859 B-scan images of 119 patients with pixel annotation of retina, macular hole, intraretinal cysts, and choroid. The quality of each image was evaluated including low signal strength, signal shield and image blur. We believe this dataset will allow interested researchers to better segment macular holes and train their models, which will benefit the further development of macular hole segmentation and clinical research.
DOI: 10.17632/c5cmktmzcf
title: Abdominal pain

description: The "Abdominal Pain C" dataset contains clinical information from patients experiencing abdominal pain, aimed at analyzing the relationship between symptoms, laboratory findings, and diagnosed causes. It includes 21 variables such as demographic data (age, sex), symptom duration, and presence of nausea, vomiting, anorexia, defecation abnormalities, and fever. Additionally, it captures relevant clinical data, including the site of pain, past surgical history, and various laboratory markers (e.g., amylase, white blood cell count, hemoglobin, platelets, liver enzymes) alongside systolic blood pressure. The final column provides the diagnosed cause of abdominal pain, such as cholecystitis, pancreatitis, or bowel obstruction. This dataset is structured for research into the diagnostic characteristics of abdominal pain across different patient profiles.
DOI: 10.17632/pcytgvc7m3
title: Data from Genome-wide scan for selection signatures in Mexican Sardo Negro Zebu cattle

description: The sampled Sardo Negro animals included 40 males and 518 females born between 2013 and 2019 in six farms in Mexico's tropical areas. Tail hair samples were collected from each bovine and submitted for genotyping with a 65k SNP chip (Axiom Bovine Genotyping v3 Array). Quality controls on animals and markers of the set were performed using the PLINK software version 1.90 (Purcell et al., 2007) according to the following parameters: minimum SNP call rate of 90%, minor allele frequencies &gt; 0.01, only autosomal SNPs were considered, and only individuals with high genotyping (at least 90% complete call rate) were included.
DOI: 10.17632/hhxynrzzt4
title: Wording Effects on two Independent Traits: MTMM Study of Relations among Self-Esteem and Locus of Control

description: Research hypothesized a trait factor and method factors for two areas: Self-esteem and locus of control. The file is an SPSS file with data gathered using Rosenberg Self-Esteem Scale and a locally developed locus of control scale. It was gathered from 10th grade students in Oman.
DOI: 10.6084/m9.figshare.6142940.v1
title: Data from: Humans strategically shift decision bias by flexibly adjusting sensory evidence accumulation in visual cortex

description: This is the data from: Niels A. Kloosterman, Jan Willem de Gee, Markus Werkle-Bergner, Ulman Lindenberger, Douglas D. Garrett, Johannes Jacobus Fahrenfort 2018. Humans strategically shift decision bias by flexibly adjusting sensory evidence accumulation in visual cortex.<br>The analysis code for these data can be found here: https://github.com/nkloost1/critEEG
DOI: 10.17632/mbt3ftp7rf
title: Dataset for Design and Optimization of a Waste Glass Recycling Network

description: Dataset used for the experiments in the paper entitled "Design and Optimization of a Waste Glass Recycling Network" submitted to the 2025 IFAC MIM conference
The data is given in the AMPL format.
DOI: 10.6084/m9.figshare.21939629.v1
title: Supplementary Material for: Targeted next-generation sequencing for the diagnosis of gene variants in patients with 46, XY disorder of sex development

description: Introduction: Disorders of sex development (DSDs) are congenital abnormalities in which chromosomal, gonadal, and anatomical sex development are atypical. One of these disorders, 46, XY DSD, is particularly difficult to diagnose and manage because its etiology and clinical phenotypes are highly heterogeneous. Methods: We used a gene panel containing 141 genes implicated in DSDs to perform targeted next-generation sequencing (NGS) in 50 patients with 46, XY DSD. Results: Gene variants were detected in 23 patients (46%). Among them, thirteen patients had previously reported pathogenic or likely pathogenic variants, nine patients had novel variants, and one patient had a previously reported variant of uncertain significance. Three of the patients with novel variants were pathogenic and the remaining are variants of uncertain significance; therefore, 16 patients had pathogenic or likely pathogenic variants according to ACMG guidelines, and the overall diagnostic rate of 46, XY DSD was 32%. The most common gene variants were SRD5A2 variants, followed by the AR variant. In addition, we analyzed the association between gene variants and clinical phenotypes. Most patients presented with multiple DSD phenotypes (i.e., two or more DSD phenotypes were observed, such as micropenis, hypospadias, and cryptorchidism), but the phenotype with the highest diagnostic rate was micropenis. Conclusion: Our results indicate that targeted NGS can effectively detect pathogenic gene variants in patients with 46, XY DSD.
DOI: 10.17632/wkttx6tp2d
title: S. aureus transposon sequencing in the murine vaginal tract

description: Results from TRANSIT Tn-seq conditional essentiality analysis, associated to the paper "Genome-wide mutagenesis identifies factors involved in MRSA vaginal colonization " by Lyon et al. (2025), under review at Cell Reports.
DOI: 10.17632/b2vfxbc2dp
title: Tissue-resident FOLR2+ macrophages associate with CD8+ T cell infiltration in human breast cancer.

description: R codes for the main methods used in the paper Tissue-resident FOLR2+ macrophages associate with CD8+ T cell infiltration in human breast cancer. (Ramos, Missolo et al.)
DOI: 10.17632/3h9gvbzz7x
title: Genomic virulence biomarkers in Pseudomonas aeruginosa bloodstream infection

description: Code and microbiological data to generate the main findings of the study: "Genomic markers of virulence in Pseudomonas aeruginosa is associated with mortality and septic shock in patients with bloodstream infection". No legal responsibility or warranty comes with the scripts or data.

Contact: john.karlsson.valik@ki.se
DOI: 10.17632/nv2x6kf5rd
title: 8 Single-Cell RNA-seq Datasets

description: 8 Single-Cell RNA-seq data sets studied in the paper `D. Chen, J, Jin, and Z.T. Ke (2023) Subject clustering by IF-PCA and several recent methods'. See `ReadMe.rtf' for details.
DOI: 10.17632/zt8hfv3vfr
title: GRA 06128 - H & Cl isotopes

description: Raw H and Cl isotope data obtained by NanoSIMS on phosphates in meteorite GRA 06128