DOI: 10.6084/m9.figshare.12016986.v1
title: meta_data

description: <b>tblhctmeta.csv: Day and source of hematopoietic cell transplant (HCT) for 1,279 patients</b>PatientID: deidentified identifier of patientsDayOfTransplant: deidentified day of HCTHCTSource: hematopoietic cell sources for HCT patients (BM_unmodified: bone marrow; PBSC_unmodified: peripheral blood stem cells; TCD: T-cell depleted; cord: cord blood)Disease: disease of patientswbcPatientId, autoFmtPatientId, nejmPatientId: identifiers for the same patients if they were also included in another previous study (wbcPatientId: Schluter, J. et al. 2019. The gut microbiota influences circulatory immune cell dynamics in humans. <i>BioRxiv</i>; autoFmtPatientId: Taur, Y. et al. 2018. Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant. <i>Science Translational Medicine</i> 10(460); nejmPatientId: Peled, J.U. et al. 2020. Microbiota as Predictor of Mortality in Allogeneic Hematopoietic-Cell Transplantation. <i>New England Journal of Medicine</i>, <i>382</i>(9), pp.822-834.)<br><b>tbldrug.csv: Timing and route of drug administration for 1,279 patients</b>PatientID: deidentified identifier of patientsStartDay: deidentified day when drug administration startedStopDay: deidentified day when drug administration stopped (including the day)Factor: name of the drugCategory: category of the drugAntiInfective: whether the drug is an anti-infective agentRoute: route of drug administration<br><b>tblInfectionsCidPapers.csv: Day of positive blood cultures for 457 patients </b>(include only microbes analyzed in<b> </b>1. Taur, Y., et al. 2012. Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation. <i>Clinical infectious diseases</i>, <i>55</i>(7), pp.905-914; 2. Stoma, I., et al. 2020. Compositional flux within the intestinal microbiota and risk for bloodstream infection with gram-negative bacteria. <i>Clinical Infectious Diseases</i>.)PatientID: deidentified identifier of patientsDay: deidentified day of infectionInfectiousAgent: the bacteria causing infections<br><b>tblbc.csv: Daily measurements of white blood cells, platelets and red blood cells for 1,279 patients</b>PatientID: deidentified ID of patientsDay: deidentified day of blood cell measurementImmatureMonocytes_unit_K_per_uL: immature monocyte cell countsSezaryCells_unit_K_per_uL: sezary cell countsVariantLymphocytes_unit_K_per_uL: variant lymphocyte cell countsImmatureGranulocytes_unit_K_per_uL: immature granulocyte cell countsBandCells_unit_K_per_uL: band cell countsBasophills_unit_K_per_uL: basophil cell countsBlastCells_unit_K_per_uL: blast cell countsEosinophils_unit_K_per_uL: eosinophil cell countsLymphocytes_unit_K_per_uL: lymphocyte cell countsNeutrophils_unit_K_per_uL: neutrophil cell countsMonocytes_unit_K_per_uL: monocyte cell countsPlatelets_unit_K_per_uL: platelet countsWBCtotal_unit_K_per_uL: total white blood cell countsRBCtotal_unit_M_per_uL: total red blood cell counts<br><b>tbltemperature.csv: </b>temperatures for 1,317 patientsPatientID: deidentified identifier of patientsDay: deidentified day when patient temperature was measuredMaxTemperature: Maximum temperature (unit: Fahrenheit) recorded on that day for that patient<br><b>tblVanA.csv</b>: Results of PCR detection for <i>vanA </i>gene for 7,708 samplesSampleID: stool sample identifier VanA: whether <i>vanA</i> gene is detected in the sample