cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15034935
title: Searching for a nearest living equivalent for Bennettitales: a promising extinct plant group for stomatal proxy reconstructions of Mesozoic <i>p</i>CO<sub>2</sub>

description: To understand Earth´s climate variability and improve predictions of future climate change, studying past climates is an important avenue to explore. A previously published record of <i>p</i>CO<sub>2</sub>, across the Triassic–Jurassic boundary (TJB, ~201 Ma) of East Greenland, showed that Bennettitales (<i>Anamozamites</i> and <i>Pterophyllum</i>) responded in parallel to the empirically proven <i>p</i>CO<sub>2</sub>-responders Ginkgoales, reducing their stomatal densities by half across the TJB, indicating a transient doubling of <i>p</i>CO<sub>2</sub>. The abundance of fossil Bennettitales in Mesozoic strata and natural history museum collections worldwide offers enormous potential for further stomatal proxy <i>p</i>CO<sub>2</sub> reconstructions, but a suitable nearest living equivalent (NLE) should ideally first be identified for this extinct plant group. Using specimens from herbarium collections, three species of cycads, historically considered the best NLE, were tested for <i>p</i>CO<sub>2</sub> response, as well as two species of tree ferns, grown in experimental growth chambers. None responded to changes in <i>p</i>CO<sub>2</sub>, and were consequently rejected as NLEs. Finally, two species of ferns were selected from the literature, and produced very similar <i>p</i>CO<sub>2</sub> compared to Ginkgoales. However, these understory ferns are not appropriate NLEs for Bennettitales due to differences in habitat and a distant evolutionary relationship. Future work should test additional plant groups, in particular seed plants such as basal angiosperms and Gnetales, for suitability as NLE for Bennettitales in <i>p</i>CO<sub>2</sub> reconstructions, for example through biogeochemical fingerprinting using infrared microspectroscopy. Until an appropriate NLE is identified, Bennettitales <i>p</i>CO<sub>2</sub> can be reconstructed based on cross-calibration of stomatal densities with those of co-occurring <i>p</i>CO<sub>2</sub> responders, such as Ginkgoales.
DOI: 10.6084/m9.figshare.15034935.v1
title: Searching for a nearest living equivalent for Bennettitales: a promising extinct plant group for stomatal proxy reconstructions of Mesozoic <i>p</i>CO<sub>2</sub>

description: To understand Earth´s climate variability and improve predictions of future climate change, studying past climates is an important avenue to explore. A previously published record of <i>p</i>CO<sub>2</sub>, across the Triassic–Jurassic boundary (TJB, ~201 Ma) of East Greenland, showed that Bennettitales (<i>Anamozamites</i> and <i>Pterophyllum</i>) responded in parallel to the empirically proven <i>p</i>CO<sub>2</sub>-responders Ginkgoales, reducing their stomatal densities by half across the TJB, indicating a transient doubling of <i>p</i>CO<sub>2</sub>. The abundance of fossil Bennettitales in Mesozoic strata and natural history museum collections worldwide offers enormous potential for further stomatal proxy <i>p</i>CO<sub>2</sub> reconstructions, but a suitable nearest living equivalent (NLE) should ideally first be identified for this extinct plant group. Using specimens from herbarium collections, three species of cycads, historically considered the best NLE, were tested for <i>p</i>CO<sub>2</sub> response, as well as two species of tree ferns, grown in experimental growth chambers. None responded to changes in <i>p</i>CO<sub>2</sub>, and were consequently rejected as NLEs. Finally, two species of ferns were selected from the literature, and produced very similar <i>p</i>CO<sub>2</sub> compared to Ginkgoales. However, these understory ferns are not appropriate NLEs for Bennettitales due to differences in habitat and a distant evolutionary relationship. Future work should test additional plant groups, in particular seed plants such as basal angiosperms and Gnetales, for suitability as NLE for Bennettitales in <i>p</i>CO<sub>2</sub> reconstructions, for example through biogeochemical fingerprinting using infrared microspectroscopy. Until an appropriate NLE is identified, Bennettitales <i>p</i>CO<sub>2</sub> can be reconstructed based on cross-calibration of stomatal densities with those of co-occurring <i>p</i>CO<sub>2</sub> responders, such as Ginkgoales.
DOI: 10.6084/m9.figshare.16622070
title: Neutron tomography, fluorescence and transmitted light microscopy reveal new insect damage, fungi and plant organ associations in the Late Cretaceous floras of Sweden

description: Neutron tomographic reconstructions, macrophotography, transmitted light microscopy and fluorescence microscopy are employed to assess the quality of organic preservation, determine organ associations, identify insect damage, and document fungal interactions with selected Santonian–lower Campanian plant fossils from the northern Kristianstad Basin, southern Sweden. <i>Fricia nathorstii</i> (Conwentz) comb. nov., is proposed for a composite fossil comprising an anatomically preserved (permineralized) cupressacean conifer cone and its subtending, concealed, leafy axis (preserved as a mould) in the Ryedal Sandstone. Several other impressions of conifer and angiosperm leaf-bearing axes and isolated leaves are described under open nomenclature. Three cuticle types are described from the non-marine plant-bearing beds in the basal part of the succession exposed at Åsen, but these are only assigned to informal morphotypes pending a comprehensive review of the extensive fossil cuticle flora. Two species of ascomycote epiphyllous fungi from Åsen are established: <i>Stomiopeltites ivoeensis</i> sp. nov. (Micropeltidales) and <i>Meliolinites scanicus</i> sp. nov. (Meliolales). The latter provides an important calibration point for dating the divergence of Meliolales, being the first pre-Cenozoic representative of the order. Various additional fungal remains, including thyriothecia, scolecospores, chlamydospores, putative germlings, and hyphae, are described from the cuticular surfaces of conifer and angiosperm leaves from Åsen. Insect herbivory is expressed in the form of both margin-feeding and piercing-and-sucking damage on angiosperm leaves. The Santonian–early Campanian vegetation is inferred to have grown in strongly humid, mid-latitude, coastal plain settings based on the depositional context of the assemblages, leaf morphology, and the pervasive distribution of epiphyllous fungi.
DOI: 10.25721/nxqc-bv94
title: Michaud veillait
DOI: 10.25721/jbs1-vp90
title: L'été
DOI: 10.5281/zenodo.5638384
title: SemEval-2013 Task 13: Word Sense Induction for Graded and Non-Graded Senses

description: Data originally provided by the SemEval-2013 Task 13 organizers and which was available through the following link: https://www.cs.york.ac.uk/semeval-2013/task13/data/uploads/semeval-2013-task-13-test-data.zip
DOI: 10.5281/zenodo.5638383
title: SemEval-2013 Task 13: Word Sense Induction for Graded and Non-Graded Senses

description: Data originally provided by the SemEval-2013 Task 13 organizers and which was available through the following link: https://www.cs.york.ac.uk/semeval-2013/task13/data/uploads/semeval-2013-task-13-test-data.zip
DOI: 10.25403/upresearchdata.16897036
title: One-way error component regression models-fixed effects model

description: Data and SAS code for one-way error component regression model-fixed effects
DOI: 10.25403/upresearchdata.16897036.v1
title: One-way error component regression models-fixed effects model

description: Data and SAS code for one-way error component regression model-fixed effects
DOI: 10.6084/m9.figshare.16917622
title: Web appendix for levels and trends in sex ratio at birth in provinces of Pakistan from 1980 to 2020 with scenario-based missing female birth projections to 2050: a Bayesian modeling approach

description: This web appendix is for: Levels and trends in sex ratio at birth in provinces of Pakistan from 1980 to 2020 with scenario-based missing female birth projections to 2050: a Bayesian modeling approach
DOI: 10.6084/m9.figshare.16917622.v1
title: Web appendix for levels and trends in sex ratio at birth in provinces of Pakistan from 1980 to 2020 with scenario-based missing female birth projections to 2050: a Bayesian modeling approach

description: This web appendix is for: Levels and trends in sex ratio at birth in provinces of Pakistan from 1980 to 2020 with scenario-based missing female birth projections to 2050: a Bayesian modeling approach
DOI: 10.6084/m9.figshare.16917631
title: Supplementary Material for: A Test of Foraging Models Using Dietary Diversity Indices for the Lomako Forest Bonobos

description: Optimal diet and functional response models are used to understand the evolution of primate foraging strategies. The predictions of these models can be tested by examining the geographic and seasonal variation in dietary diversity. Dietary diversity is a useful tool that allows dietary comparisons across differing sampling locations and time periods. Bonobos (<i>Pan paniscus</i>) are considered primarily frugivorous and consume fruits, leaves, insects, vertebrates, terrestrial herbaceous vegetation, and flowers. Frugivores, like bonobos, are valuable for examining dietary diversity and testing foraging models because they eat a variety of species and are subject to seasonal shifts in fruit availability. Frugivorous primate species thus allow for tests of how variation in dietary diversity is correlated with variation in ecological factors. We investigated measures of dietary diversity in bonobos at two research camps across field seasons within the same protected area (N’dele and Iyema) in Lomako Forest, Democratic Republic of the Congo. We compared the results of behavioral observation (1984/1985, 1991, 1995, 2014, and 2017) and fecal washing analysis (2007 and 2009) between seasons and study period using three diversity indices (Shannon’s, Simpson’s, and SW evenness). The average yearly dietary diversity indices at N’dele were Shannon’s <i>Hʹ</i> = 2.04, Simpson’s D = 0.82, and SW evenness = 0.88 while at Iyema, the indices were Shannon’s <i>Hʹ</i> = 2.02, Simpson’s D = 0.82, and SW evenness = 0.88. Behavioral observation data sets yielded significantly higher dietary diversity indices than fecal washing data sets. We found that food item (fruit, leaf, and flower) consumption was not associated with seasonal food availability for the 2017 behavioral observation data set. Shannon’s index was lower during periods when fewer bonobo dietary items were available to consume and higher when fruit was abundant. Finally, we found that optimal diet models best-explained patterns of seasonal food availability and dietary diversity. Dietary diversity is an essential factor to consider when understanding primate diets and can be a tool in understanding variation in primate diets, particularly among frugivores. Dietary diversity varies across populations of the same species and across time, and it is critical in establishing a complete understanding of how primate diets change over time.
DOI: 10.6084/m9.figshare.16917631.v1
title: Supplementary Material for: A Test of Foraging Models Using Dietary Diversity Indices for the Lomako Forest Bonobos

description: Optimal diet and functional response models are used to understand the evolution of primate foraging strategies. The predictions of these models can be tested by examining the geographic and seasonal variation in dietary diversity. Dietary diversity is a useful tool that allows dietary comparisons across differing sampling locations and time periods. Bonobos (<i>Pan paniscus</i>) are considered primarily frugivorous and consume fruits, leaves, insects, vertebrates, terrestrial herbaceous vegetation, and flowers. Frugivores, like bonobos, are valuable for examining dietary diversity and testing foraging models because they eat a variety of species and are subject to seasonal shifts in fruit availability. Frugivorous primate species thus allow for tests of how variation in dietary diversity is correlated with variation in ecological factors. We investigated measures of dietary diversity in bonobos at two research camps across field seasons within the same protected area (N’dele and Iyema) in Lomako Forest, Democratic Republic of the Congo. We compared the results of behavioral observation (1984/1985, 1991, 1995, 2014, and 2017) and fecal washing analysis (2007 and 2009) between seasons and study period using three diversity indices (Shannon’s, Simpson’s, and SW evenness). The average yearly dietary diversity indices at N’dele were Shannon’s <i>Hʹ</i> = 2.04, Simpson’s D = 0.82, and SW evenness = 0.88 while at Iyema, the indices were Shannon’s <i>Hʹ</i> = 2.02, Simpson’s D = 0.82, and SW evenness = 0.88. Behavioral observation data sets yielded significantly higher dietary diversity indices than fecal washing data sets. We found that food item (fruit, leaf, and flower) consumption was not associated with seasonal food availability for the 2017 behavioral observation data set. Shannon’s index was lower during periods when fewer bonobo dietary items were available to consume and higher when fruit was abundant. Finally, we found that optimal diet models best-explained patterns of seasonal food availability and dietary diversity. Dietary diversity is an essential factor to consider when understanding primate diets and can be a tool in understanding variation in primate diets, particularly among frugivores. Dietary diversity varies across populations of the same species and across time, and it is critical in establishing a complete understanding of how primate diets change over time.
DOI: 10.5281/zenodo.5615050
title: Code and data sets for "MS²Rescore: Data-driven rescoring dramatically boosts immunopeptide identification rates"

description: Code used to prepare data sets, train and evaluate new MS²PIP models, evaluate MS²Rescore for immunopeptidomics, and generate figures. See README.md for more information on how to use these files and reproduce the results reported in the manuscript titled "MS²Rescore: Data-driven rescoring dramatically boosts immunopeptide identification rates".
DOI: 10.5519/qd.1bkkutkz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (897 records)
DOI: 10.6084/m9.figshare.16917574.v1
title: Online supplemental material to: Two new mutations in the CEL gene causing diabetes and hereditary pancreatitis: How to correctly identify MODY8 cases.

description: Supplementary table containing clinical information for the diabetes cohorts screened for mutations in the <i>CEL</i> gene.
DOI: 10.6084/m9.figshare.16917574
title: Online supplemental material to: Two new mutations in the CEL gene causing diabetes and hereditary pancreatitis: How to correctly identify MODY8 cases.

description: Supplementary table containing clinical information for the diabetes cohorts screened for mutations in the <i>CEL</i> gene.
DOI: 10.6084/m9.figshare.16917649
title: Excluded Studies_Betzler_LS and Knee OA.xlsx

description: Excluded Studies for SRMA:The Prevalence of Co-existing Lumbar Spondylosis and Knee Osteoarthritis - A Systematic Review and Meta-AnalysisASJ Submission
DOI: 10.5281/zenodo.5638426
title: Oligonucleotide primers used for RT-PCR

description: Oligonucleotide primers used for RT-PCR
DOI: 10.5285/c9262369-4db1-48e1-9660-3ef8667ab19b
title: Historic reconstructions of daily groundwater levels for eight boreholes in Burkina Faso

description: This dataset consists of reconstructions of daily groundwater levels for eight boreholes in Burkina Faso.  Data for each borehole is provided in an individual csv file, with reconstructed groundwater level time series reported in metres above sea level (GWL, mASL).  The groundwater level reconstructions were derived in 2019 as a part of the BRAVE project (NE/M008827/1 and NE/M008983/1) to develop an improved understanding of temporal variability in groundwater levels in sub-Saharan Africa. The reconstructions were derived using the lumped conceptual groundwater model AquiMod. Observed groundwater level time series for the eight boreholes were modelled using AquiMod, and the calibrated models were used with historic precipitation and potential evapotranspiration data to derive the reconstructions. The length of the time series of reconstructed groundwater levels varies between the boreholes due to differences in the length of the precipitation time series used to derive the reconstructions.  Full details of this dataset are reported by Ascott et al. (2020).

Ascott, M.J., Macdonald, D.M.J., Black, E., Verhoef, A., Nakohoun, P., Tirogo, J., Sandwidi, W.J.P., Bliefernicht, J., Sorensen, J.P.R., Bossa, A.Y., 2020. In Situ Observations and Lumped Parameter Model Reconstructions Reveal Intra-Annual to Multidecadal Variability in Groundwater Levels in Sub-Saharan Africa. Water Resour. Res., 56(12): e2020WR028056. DOI:https://doi.org/10.1029/2020WR028056
DOI: 10.23729/a30616d9-6e34-42f0-8720-42e5540238f1
title: Circvol lab day 30 preview

description: Day 30 scans of the lab samples of CircVol. Collective CircVol entry: https://doi.org/10.23729/f9ce14e4-a657-471e-b755-37ff4b902b3f Preview of PAS-dataset https://doi.org/10.23729/c5745abf-efbe-4b40-a336-0642c7f200f2
DOI: 10.6084/m9.figshare.16911931
title: Supplemental-Materials Fujisawa et al..pdf

description: Data set including three tables (primers utilized in this study, P-values for gene expression levels, up-regulated and down-regulated genes in R-offsprings) and two figures (examples of PCR-based sex typing for the examined mice, sperms of male control and calorie-restricted offspring at 6 weeks of age).
DOI: 10.6084/m9.figshare.16911931.v2
title: Supplemental-Materials Fujisawa et al..pdf

description: Data set including three tables (primers utilized in this study, P-values for gene expression levels, up-regulated and down-regulated genes in R-offsprings) and two figures (examples of PCR-based sex typing for the examined mice, sperms of male control and calorie-restricted offspring at 6 weeks of age).
DOI: 10.6084/m9.figshare.16911931.v1
title: Supplemental-Materials Fujisawa et al..pdf

description: Data set including three tables (primers utilized in this study, P-values for gene expression levels, up-regulated and down-regulated genes in R-offsprings) and two figures (examples of PCR-based sex typing for the examined mice, sperms of male control and calorie-restricted offspring at 6 weeks of age).
DOI: 10.26126/intervals.bbcmvp
title: Active Area
DOI: 10.26126/intervals.dfv2dm
title: Dominant Frequency
DOI: 10.26126/intervals.s2bptj
title: Glocose Measurements

description: Glucose measurements in organotypic cells
DOI: 10.26126/intervals.twlls5
title: Threhalose-HAC Measurements
DOI: 10.26126/intervals.lqoskn
title: Trehalose Measurements

description: Trehalose measurements in organotypic cultures
DOI: 10.26126/intervals.jrfusr
title: Weighted Frequency
DOI: 10.5281/zenodo.5638497
title: COVID-19 symptoms over time, Israel

description: COVID-19 symptoms over time in Israel on a daily basis for people who tested positive. This dataset was made by processing a larger dataset of symptoms reported to testing centers for only COVID-19 positive testing patients. The dataset has been organized on a daily basis.
DOI: 10.5281/zenodo.5638496
title: COVID-19 symptoms over time, Israel

description: COVID-19 symptoms over time in Israel on a daily basis for people who tested positive. This dataset was made by processing a larger dataset of symptoms reported to testing centers for only COVID-19 positive testing patients. The dataset has been organized on a daily basis.
DOI: 10.5281/zenodo.5638296
title: uprolls2021-a

description: This deposit serves as a long-term archive for the unprocessed raw data behind the uprolls2021 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/uprolls2021<br>
DOI: 10.5281/zenodo.5638295
title: uprolls2021-a

description: This deposit serves as a long-term archive for the unprocessed raw data behind the uprolls2021 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/uprolls2021<br>
DOI: 10.5281/zenodo.5616116
title: Affective, physiological, and attention restoration at a wooden desk: A pilot study (Datasets and R analysis code)

description: This entry contains datasets and R processing and analysis code for the article <em>Affective, physiological, and attention restoration at a wooden desk: A pilot study.</em><br> <br> The analysis primarily investigates how people respond to the Mental Arithmetic Task (MAT) in terms of their affective states and physiological arousal, and how their cognitive performance changes between two task administrations. The analysis also checks whether affective, physiological, and cognitive responses differ between settings furnished with or without wood. We base our analysis on self-reported affective states, captured physiological (electrodermal and cardiovascular) activity, and results on the cognitive task (i.e., MAT).
DOI: 10.5281/zenodo.5616115
title: Affective, physiological, and attention restoration at a wooden desk: A pilot study (Datasets and R analysis code)

description: This entry contains datasets and R processing and analysis code for the article <em>Affective, physiological, and attention restoration at a wooden desk: A pilot study.</em><br> <br> The analysis primarily investigates how people respond to the Mental Arithmetic Task (MAT) in terms of their affective states and physiological arousal, and how their cognitive performance changes between two task administrations. The analysis also checks whether affective, physiological, and cognitive responses differ between settings furnished with or without wood. We base our analysis on self-reported affective states, captured physiological (electrodermal and cardiovascular) activity, and results on the cognitive task (i.e., MAT).