cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14764654
title: Dataset: Raman Spectroscopy as a Comprehensive Tool for Profiling Endospore-forming Bacteria

description: Dataset: Raman Spectroscopy as a Comprehensive Tool for Profiling Endospore-forming Bacteria (published in Analyst, 2025, 150, 1652-1661. DOI: 10.1039/D5AN00115C)

Raman spectra of single endospores with an excitation wavelength of 532 nm. Each endospore was measured in duplicate by the system.

The data description is the following:

Strains used in the dataset:




Species
Strain
Label


Bacillus cereus


DSM345

DSM351



B. cereus DSM345

B. cereus DSM351



Bacillus mycoides
ATCC6462
B. mycoides ATCC6462


Bacillus spizizenii
DSM6399
B. spizizenii DSM6399


Bacillus thuringiensis
DSM350
B. thuringiensis DSM350


Lysinibacillus sphaericus
DSM28
L. sphaericus DSM28


Bacillus licheniformis
DSM13
B. licheniformis DSM13


Paraclostridium sordellii
ATCC9714
P. sordellii ATCC9714


Clostridioides difficile


DSM27638

DSM27640

DSM28196

DSM28645

DSM27147

DSM27543

DSM27544

DSM27639

UK062

UK127



C. difficile DSM27638

C. difficile DSM27640

C. difficile DSM28196

C. difficile DSM28645

C. difficile DSM27147

C. difficile DSM27543

C. difficile DSM27544

C. difficile DSM27639

C. difficile UK062

C. difficile UK127



Clostridium perfringens


UK063

ATCC13124



C. perfringens UK063

C. perfringens ATCC13124



Clostridium sporogenes
DSM1664
C. sporogenes DSM1664


Clostridium butyricum
DSM2478
C. butyricum DSM2478


Clostridium tertium
DSM662
C. tertium DSM662


Clostridium beijerinckii
DSM53
C. beijerinckii DSM53


Clostridium felsineum
DSM51
C. felsineum DSM51


Clostridium cadaveris
DSM1284
C. cadaveris DSM1284


Clostridium septicum
DSM7534
C. septicum DSM7534




 

Datasets:

Folder structure: RAW = raw data acquired from the measuring device; DATA = sorted and pre-processed data with metadata excel file for Ramanmetrix; RESULTS = contains all data files that can be downloaded from the Ramanmetrix software.

Calcium vs. Magnesium vs. Manganese: Single cell Raman spectra of B. cereus DSM351 and C. butyricum DSM2478 cultivated on nutrient agar supplemented with either calcium, magnesium or manganese; calibration standard 4-AAP; Single cell analysis with 532 nm excitation

Endospore Data: classification and validation data of the main endospore data set; each species was measured in three biological replicates with 50-100 single spore Raman spectra each; vegetative cells were measured also in three biological replicates with 50-100 single cell Raman spectra each; both morphology types were measured with 532 nm excitation; calibration standard 4-AAP

Endospore Development: Single spore analysis of endospore development from a vegetative cell to a mature endospore; not a time series but rather individual spectra from within the same sample; sample name C. difficile UK127; measured with 532 nm excitation; calibration standard 4-AAP

Data structure for Ramanmetrix can be found in the metadata files in each DATA folder.

Individual spectra are in the folders sorted by the date they were measured.
DOI: 10.5281/zenodo.14764655
title: Dataset: Raman Spectroscopy as a Comprehensive Tool for Profiling Endospore-forming Bacteria

description: Dataset: Raman Spectroscopy as a Comprehensive Tool for Profiling Endospore-forming Bacteria (published in Analyst, 2025, 150, 1652-1661. DOI: 10.1039/D5AN00115C)

Raman spectra of single endospores with an excitation wavelength of 532 nm. Each endospore was measured in duplicate by the system.

The data description is the following:

Strains used in the dataset:




Species
Strain
Label


Bacillus cereus


DSM345

DSM351



B. cereus DSM345

B. cereus DSM351



Bacillus mycoides
ATCC6462
B. mycoides ATCC6462


Bacillus spizizenii
DSM6399
B. spizizenii DSM6399


Bacillus thuringiensis
DSM350
B. thuringiensis DSM350


Lysinibacillus sphaericus
DSM28
L. sphaericus DSM28


Bacillus licheniformis
DSM13
B. licheniformis DSM13


Paraclostridium sordellii
ATCC9714
P. sordellii ATCC9714


Clostridioides difficile


DSM27638

DSM27640

DSM28196

DSM28645

DSM27147

DSM27543

DSM27544

DSM27639

UK062

UK127



C. difficile DSM27638

C. difficile DSM27640

C. difficile DSM28196

C. difficile DSM28645

C. difficile DSM27147

C. difficile DSM27543

C. difficile DSM27544

C. difficile DSM27639

C. difficile UK062

C. difficile UK127



Clostridium perfringens


UK063

ATCC13124



C. perfringens UK063

C. perfringens ATCC13124



Clostridium sporogenes
DSM1664
C. sporogenes DSM1664


Clostridium butyricum
DSM2478
C. butyricum DSM2478


Clostridium tertium
DSM662
C. tertium DSM662


Clostridium beijerinckii
DSM53
C. beijerinckii DSM53


Clostridium felsineum
DSM51
C. felsineum DSM51


Clostridium cadaveris
DSM1284
C. cadaveris DSM1284


Clostridium septicum
DSM7534
C. septicum DSM7534




 

Datasets:

Folder structure: RAW = raw data acquired from the measuring device; DATA = sorted and pre-processed data with metadata excel file for Ramanmetrix; RESULTS = contains all data files that can be downloaded from the Ramanmetrix software.

Calcium vs. Magnesium vs. Manganese: Single cell Raman spectra of B. cereus DSM351 and C. butyricum DSM2478 cultivated on nutrient agar supplemented with either calcium, magnesium or manganese; calibration standard 4-AAP; Single cell analysis with 532 nm excitation

Endospore Data: classification and validation data of the main endospore data set; each species was measured in three biological replicates with 50-100 single spore Raman spectra each; vegetative cells were measured also in three biological replicates with 50-100 single cell Raman spectra each; both morphology types were measured with 532 nm excitation; calibration standard 4-AAP

Endospore Development: Single spore analysis of endospore development from a vegetative cell to a mature endospore; not a time series but rather individual spectra from within the same sample; sample name C. difficile UK127; measured with 532 nm excitation; calibration standard 4-AAP

Data structure for Ramanmetrix can be found in the metadata files in each DATA folder.

Individual spectra are in the folders sorted by the date they were measured.
DOI: 10.13145/bacdive135277.20241212.9.2
title: Tenacibaculum maritimum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive135290.20241212.9.2
title: Klebsiella oxytoca

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive135291.20241212.9.2
title: Listeria monocytogenes

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive135293.20241212.9.2
title: Lactobacillus acidophilus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive135295.20241212.9.2
title: Helicobacter ganmani

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive135305.20241212.9.2
title: Streptococcus pyogenes

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15121/2478486
title: Cape EGS: Frisco Pad Wells Flow Test Microseismic Data

description: This dataset contains microseismic data acquired during the Frisco pad flow test project led by Fervo Energy, conducted between July 17th - Aug 12th 2024, near the Utah FORGE geothermal site. The microseismic data was collected from various Utah FORGE wells: via Distributed Acoustic Sensing (DAS) fiber in 16B, and two 3-component geophones located in wells 56-32 and 78B. The dataset is structured in SEGY format, where the first six traces represent data from the geophones, and the remaining traces capture DAS data from well 16B. Each SEGY file in this dataset contains triggered microseismic events, with event initiation based on Short-Time Average over Long-Time Average (STA/LTA) detection criteria during the stimulation process. Files are grouped by time intervals and named following the structure "[WellPad][WellName][Month]_[Year]Divine_Trigger[EventNumber].sgy," indicating well pad, well name, date, and event number. Sampling parameters include a spatial sampling of approximately 2 meters for DAS channels and a temporal sampling rate of 2000 Hz, with each data record spanning 1.2 seconds. The files' coordinates are referenced to the location of the FORGE 16A-32 wellhead, positioned at UTM coordinates: Easting 334641.1891 m and Northing 4263443.693 m. The geographic coordinates for this origin are 38.50402147 latitude and -112.8963897 longitude, with an elevation of 1650.0249 meters above sea level.
DOI: 10.15468/dl.usfaez
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Petrocosmea rotundifolia M.Q.Han, H.Jiang & Yan Liu)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001218-241125135418005/datasets/export for details.
DOI: 10.15468/dl.pgebwq
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callitriche rimosa Fassett"
 ]
}

 The dataset includes 110 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001219-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbyx5n
title: Occurrence Download

description: A dataset containing 11259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Vaccaria hispanica (Mill.) Rauschert"
 ]
}

 The dataset includes 11259 records from 347 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001221-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.um292q
title: Occurrence Download

description: A dataset containing 24412 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Catálogo de Plantas das Unidades de Conservação do Brasil"
 ]
}

 The dataset includes 24412 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001220-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cga4m2
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Petrocosmea sericea C.Y.Wu ex H.W.Li)"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001224-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3haua
title: Occurrence Download

description: A dataset containing 24412 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Catálogo de Plantas das Unidades de Conservação do Brasil"
 ]
}

 The dataset includes 24412 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001223-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dbthb2
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Littorella australis Griseb."
 ]
}

 The dataset includes 12 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001225-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8v46ne
title: Occurrence Download

description: A dataset containing 272 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micranthemum glomeratum (Chapm.) Shinners"
 ]
}

 The dataset includes 272 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001227-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjrqer
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Petrocosmea shilinensis Y.M.Shui & H.T.Zhao)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001226-241125135418005/datasets/export for details.
DOI: 10.15468/yxpvze
title: El gato montés en los parques naturales de Álava - Sistema de Información de la Naturaleza de Euskadi

description: El objetivo principal de este estudio es analizar la distribución del gato montés en la red de parques naturales de Álava.
DOI: 10.15468/d2dtq9
title: Observaciones de castor en Álava - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/z35ttk
title: Situación del sapillo pintojo meridional en los Parques Naturales de Izki y Valderejo - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/atwtkx
title: Monitorización de la comunidad de anfibios mediante metabarcoding de ADN ambiental - Sistema de Información de la Naturaleza de Euskadi

description: Proyecto subvencionado: 2019 Subvenciones a entidades privadas que realicen proyectos para la generación de conocimiento en la conservación del Patrimonio Natural - Diversidad biológica y geológica - Euskadi.eus
DOI: 10.15468/kq3evj
title: Lobo en Álava - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/gnq7cm
title: Colonias y principales refugios de quirópteros en la Zona de Especial Conservación de Arkamo-Gibijo-Arrastaria y localidades adyacentes - Sistema de Información de la Naturaleza de Euskadi

description: Inventariado de los principales refugios y colonias de quirópteros (tanto de cría, hibernación como de otros momentos de su ciclo biológico) de la Zona de Especial Conservación (ZEC) de Arkamo-Gibijo-Arrastaria y las localidades adyacentes pertenecientes a los municipios de Urkabustaiz, Kuartango, Valdegobia y Ribera Alta, prospectando para ello posibles lugares de refugio: cuevas, cavidades artificiales, puentes, edificios religiosos, viviendas, etc. Proyecto subvencionado: 2021 Subvenciones a asociaciones, entidades privadas, organizaciones de voluntariado y fundaciones que realicen proyectos para la generación de conocimiento en la conservación del Patrimonio Natural - Diversidad biológica y geológica - Euskadi.eus
DOI: 10.15468/f2ksnn
title: Censo de la avifauna fluvial en los parques naturales de Álava - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/zbvssr
title: Odonatos del País Vasco - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/dl.4u9ebw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Petrocosmea sichuanensis Chun ex W.T.Wang)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001228-241125135418005/datasets/export for details.
DOI: 10.15468/9s2tvp
title: Censo de picamaderos negro en los Parques Naturales de Álava - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/wvszt2
title: Seguimiento de colonias de avión zapador en Álava - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/h6ayut
title: Quirópteros de Gorbeia - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/nr44zv
title: Revisión del hábitat 6210* en los Parques Naturales de Álava. Muestreo de orquídeas - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/y5eu6d
title: Estatus y distribución de las poblaciones de náyades (bivalvos dulceacuícolas) en el territorio histórico de Álava - Sistema de Información de la Naturaleza de Euskadi
DOI: 10.15468/dl.bprfan
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micranthemum reflexum (C.Wright ex Griseb.) Wright"
 ]
}

 The dataset includes 36 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001229-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nb5kck
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Petrocosmea sinensis Oliv.)"
 ]
}

 The dataset includes 25 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001230-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4cp935
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemianthus callitrichoides Griseb."
 ]
}

 The dataset includes 48 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001231-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdahcz
title: Occurrence Download

description: A dataset containing 1212861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 1212861 records from 363 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001222-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10583222
title: Towards Adaptation in Multiobjective Evolutionary Algorithms for Integer Problems (Code and Dataset)

description: This is the code and the dataset for our paper published at IEEE WCCI/CEC 2024, https://2024.ieeewcci.org.

Title: "Towards Adaptation in Multiobjective Evolutionary Algorithms for Integer Problems"Abstract: Parameter control refers to the techniques that dynamically adapt the parameter values of the evolutionary algorithm during the optimization process, such as population size, crossover rate, or operator selection. Adaptation can improve the performance and robustness of the algorithm, however, parameter control mechanisms themselves need to be designed and configured carefully. With this article, we contribute a systematic investigation of an adaptive, multi-objective algorithm that is designed for the optimisation of integer decision spaces. We find that (1) adaptation outperforms the best static configurations, and (2) performance of the multi-objective algorithm is often independent of the adaptation scheme's initial configuration.
DOI: 10.5281/zenodo.10583223
title: Towards Adaptation in Multiobjective Evolutionary Algorithms for Integer Problems (Dataset)
DOI: 10.5281/zenodo.11085103
title: Towards Adaptation in Multiobjective Evolutionary Algorithms for Integer Problems (Dataset)

description: This is the data set for our paper published at IEEE WCCI/CEC 2024, https://2024.ieeewcci.org.

Title: "Towards Adaptation in Multiobjective Evolutionary Algorithms for Integer Problems"Abstract: Parameter control refers to the techniques that dynamically adapt the parameter values of the evolutionary algorithm during the optimization process, such as population size, crossover rate, or operator selection. Adaptation can improve the performance and robustness of the algorithm, however, parameter control mechanisms themselves need to be designed and configured carefully. With this article, we contribute a systematic investigation of an adaptive, multi-objective algorithm that is designed for the optimisation of integer decision spaces. We find that (1) adaptation outperforms the best static configurations, and (2) performance of the multi-objective algorithm is often independent of the adaptation scheme's initial configuration.
DOI: 10.5281/zenodo.11096148
title: Towards Adaptation in Multiobjective Evolutionary Algorithms for Integer Problems (Code and Dataset)

description: This is the code and the dataset for our paper published at IEEE WCCI/CEC 2024, https://2024.ieeewcci.org.

Title: "Towards Adaptation in Multiobjective Evolutionary Algorithms for Integer Problems"Abstract: Parameter control refers to the techniques that dynamically adapt the parameter values of the evolutionary algorithm during the optimization process, such as population size, crossover rate, or operator selection. Adaptation can improve the performance and robustness of the algorithm, however, parameter control mechanisms themselves need to be designed and configured carefully. With this article, we contribute a systematic investigation of an adaptive, multi-objective algorithm that is designed for the optimisation of integer decision spaces. We find that (1) adaptation outperforms the best static configurations, and (2) performance of the multi-objective algorithm is often independent of the adaptation scheme's initial configuration.
DOI: 10.15468/dl.4wn9q8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Petrocosmea sinousfolia Z.J.Qiu)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001232-241125135418005/datasets/export for details.
DOI: 10.15468/dl.9cncau
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemianthus glomeratus (Chapm.) Pennell"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001233-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.