cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8949191
title: Data Figure 3: nob mice ganglion cell oscillations, asynchronous in the dark, are synchronized by light stimulation.

description: Data Figure 3: nob mice ganglion cell oscillations, asynchronous in the dark, are synchronized by light stimulation.
DOI: 10.6084/m9.figshare.8949194.v1
title: Data Figure 4: Pharmacological block of excitatory and inhibitory inputs in nob retina blocks or modify both GC and eye-movement oscillations

description: Data Figure 4: Pharmacological block of excitatory and inhibitory inputs in nob retina blocks or modify both GC and eye-movement oscillations
DOI: 10.6084/m9.figshare.8949188
title: Data Figure 2: nob mice ganglion cell oscillate.

description: Data Figure 2: nob mice ganglion cell oscillate.
DOI: 10.6084/m9.figshare.8949182
title: Data Figure 1: Horizontal eye movements are disturbed in nob mice.

description: Data Figure 1: Horizontal eye movements are disturbed in nob mice.
DOI: 10.6084/m9.figshare.8949188.v1
title: Data Figure 2: nob mice ganglion cell oscillate.

description: Data Figure 2: nob mice ganglion cell oscillate.
DOI: 10.26180/5d36972b02e13
title: GTDB_r86_46k

description: A collection of (compressed) index database files suitable for use with Centrifuge, Kraken1 and Kraken2 that can be used to classify metagenomes using the GTDB_r86_46k index, as described in Meric, Wick et al. (2019) manuscript. More information and details at: https://github.com/rrwick/Metagenomics-Index-Correction<br>
DOI: 10.6084/m9.figshare.8949110
title: Supplementary Material for: Increased Neuronal Nuclear and Perikaryal Size in the Medial Mamillary Nucleus of Vascular Dementia and Alzheimer’s Disease Patients: Relation to Nuclear Estrogen Receptor α

description: <b><i>Background:</i></b> The hypothalamic medial mamillary (MMN) and the tuberomamillary (TMN) nuclei are important hubs in memory circuits. Previous studies determining the neuronal Golgi complex size showed decreased metabolic activity of the TMN neurons in both Alzhei­mer’s disease (AD) and vascular dementia (VD), and no obvious decline in the MMN of these patients. <b><i>Objectives:</i></b> In the present study, we aimed at determining whether other morphometric parameters that are informative about the neuronal metabolic activity are changed in the MMN of AD and VD patients and whether they can be related to the expression of the nuclear estrogen receptor α (ERα) that can mediate neurotrophic effects of estrogens in the brain. <b><i>Method:</i></b> The size of neuronal nuclei and perikarya was determined in AD, VD, and nondemented control patients, in relation to the expression of the nuclear ERα. <b><i>Results:</i></b> We found that neuronal nuclear and perikaryal sizes were significantly larger in the MMN in VD than in control patients (<i>p</i> &lt; 0.01). Neuronal nuclei (<i>p</i> &lt; 0.05), but not perikarya were larger in AD than in control patients. Neuronal nuclei and perikarya were larger if nuclear ERα staining was present. The intensity of ERα in the neuronal nuclei was significantly correlated with both nuclear and perikaryal sizes (<i>p</i> &lt; 0.007). <b><i>Conclusions:</i></b> The human MMN shows a remarkable activation in aging and extra activation in dementias (AD and VD) that may be mediated by nuclear ERα. This makes it so far a unique brain area to study compensatory mechanisms that may prevent neurodegeneration.
DOI: 10.6084/m9.figshare.8949110.v1
title: Supplementary Material for: Increased Neuronal Nuclear and Perikaryal Size in the Medial Mamillary Nucleus of Vascular Dementia and Alzheimer’s Disease Patients: Relation to Nuclear Estrogen Receptor α

description: <b><i>Background:</i></b> The hypothalamic medial mamillary (MMN) and the tuberomamillary (TMN) nuclei are important hubs in memory circuits. Previous studies determining the neuronal Golgi complex size showed decreased metabolic activity of the TMN neurons in both Alzhei­mer’s disease (AD) and vascular dementia (VD), and no obvious decline in the MMN of these patients. <b><i>Objectives:</i></b> In the present study, we aimed at determining whether other morphometric parameters that are informative about the neuronal metabolic activity are changed in the MMN of AD and VD patients and whether they can be related to the expression of the nuclear estrogen receptor α (ERα) that can mediate neurotrophic effects of estrogens in the brain. <b><i>Method:</i></b> The size of neuronal nuclei and perikarya was determined in AD, VD, and nondemented control patients, in relation to the expression of the nuclear ERα. <b><i>Results:</i></b> We found that neuronal nuclear and perikaryal sizes were significantly larger in the MMN in VD than in control patients (<i>p</i> &lt; 0.01). Neuronal nuclei (<i>p</i> &lt; 0.05), but not perikarya were larger in AD than in control patients. Neuronal nuclei and perikarya were larger if nuclear ERα staining was present. The intensity of ERα in the neuronal nuclei was significantly correlated with both nuclear and perikaryal sizes (<i>p</i> &lt; 0.007). <b><i>Conclusions:</i></b> The human MMN shows a remarkable activation in aging and extra activation in dementias (AD and VD) that may be mediated by nuclear ERα. This makes it so far a unique brain area to study compensatory mechanisms that may prevent neurodegeneration.
DOI: 10.6084/m9.figshare.8949032
title: Davis et al FSGS biopsy audit.xlsx

description: dataset
DOI: 10.6084/m9.figshare.8949047
title: Novel diversity in mitochondrial genomes of deep-sea Pennatulacea (Cnidaria: Anthozoa: Octocorallia)

description: We present the first documented complete mitogenomes of deep-sea Pennatulacea, representing nine genera and eight families. These include one species each of the deep-sea genera <i>Funiculina, Halipteris</i>, <i>Protoptilum</i> and <i>Distichoptilum</i>, four species each of <i>Umbellula</i> and <i>Pennatula</i>, three species of <i>Kophobelemnon</i> and two species of <i>Anthoptilum</i>, as well as one species of the epi- and mesobenthic genus <i>Virgularia</i>. Seventeen circular genomes ranged from 18,513 bp (<i>Halipteris</i> cf. <i>finmarchica</i>) to 19,171 bp (<i>Distichoptilum gracile</i>) and contained all genes standard to octocoral mitochondrial genomes (14 protein-coding genes, two ribosomal RNA genes and one transfer RNA). We found at least three different gene orders in Pennatulacea: the ancestral gene order, the gene order found in bamboo corals (Family Isididae), and a novel gene order. The mitogenome of one species of <i>Umbellula</i> has a bipartite genome (∼13 kbp and ∼5 kbp), with good evidence that both parts are circular.
DOI: 10.6084/m9.figshare.8949047.v2
title: Novel diversity in mitochondrial genomes of deep-sea Pennatulacea (Cnidaria: Anthozoa: Octocorallia)

description: We present the first documented complete mitogenomes of deep-sea Pennatulacea, representing nine genera and eight families. These include one species each of the deep-sea genera <i>Funiculina, Halipteris</i>, <i>Protoptilum</i> and <i>Distichoptilum</i>, four species each of <i>Umbellula</i> and <i>Pennatula</i>, three species of <i>Kophobelemnon</i> and two species of <i>Anthoptilum</i>, as well as one species of the epi- and mesobenthic genus <i>Virgularia</i>. Seventeen circular genomes ranged from 18,513 bp (<i>Halipteris</i> cf. <i>finmarchica</i>) to 19,171 bp (<i>Distichoptilum gracile</i>) and contained all genes standard to octocoral mitochondrial genomes (14 protein-coding genes, two ribosomal RNA genes and one transfer RNA). We found at least three different gene orders in Pennatulacea: the ancestral gene order, the gene order found in bamboo corals (Family Isididae), and a novel gene order. The mitogenome of one species of <i>Umbellula</i> has a bipartite genome (∼13 kbp and ∼5 kbp), with good evidence that both parts are circular.
DOI: 10.6084/m9.figshare.8948984
title: Funny bikes: a symmetrical study of urban space, vehicular units and mobility through the voyeuristic spokesperson of a video lens

description: This paper presents methodological considerations from a comparative, symmetrical video analysis of cyclist practices in Gothenburg and Toulouse. Video recording pays as much attention to the properties of bicycles as to the characteristics of people; it takes into account the pragmatic and situated dimension and, thus, allows a generalised symmetry. From there, visual methods enable us to submit the collected material to a double treatment of a quantitative analysis of observed bicycles and a qualitative ethnomethodological analysis of bike rental sequences. To better understand the logic and challenges of our method, we present it alongside an analogy with a famous film equivalent – the strategy used by the film-maker Michael Haneke in his heuristic film(s), Funny Games. Despite objectives and content that are obviously completely at odds to one another, the Funny Games film(s) and our own videos share at least five interesting features: twin films, static shots, photomontage, silent films, and rewinding.
DOI: 10.6084/m9.figshare.8949047.v1
title: Novel diversity in mitochondrial genomes of deep-sea Pennatulacea (Cnidaria: Anthozoa: Octocorallia)

description: We present the first documented complete mitogenomes of deep-sea Pennatulacea, representing nine genera and eight families. These include one species each of the deep-sea genera <i>Funiculina, Halipteris</i>, <i>Protoptilum</i> and <i>Distichoptilum</i>, four species each of <i>Umbellula</i> and <i>Pennatula</i>, three species of <i>Kophobelemnon</i> and two species of <i>Anthoptilum</i>, as well as one species of the epi- and mesobenthic genus <i>Virgularia</i>. Seventeen circular genomes ranged from 18,513 bp (<i>Halipteris</i> cf. <i>finmarchica</i>) to 19,171 bp (<i>Distichoptilum gracile</i>) and contained all genes standard to octocoral mitochondrial genomes (14 protein-coding genes, two ribosomal RNA genes and one transfer RNA). We found at least three different gene orders in Pennatulacea: the ancestral gene order, the gene order found in bamboo corals (Family Isididae), and a novel gene order. The mitogenome of one species of <i>Umbellula</i> has a bipartite genome (∼13 kbp and ∼5 kbp), with good evidence that both parts are circular.
DOI: 10.6084/m9.figshare.8948984.v2
title: Funny bikes: a symmetrical study of urban space, vehicular units and mobility through the voyeuristic spokesperson of a video lens

description: This paper presents methodological considerations from a comparative, symmetrical video analysis of cyclist practices in Gothenburg and Toulouse. Video recording pays as much attention to the properties of bicycles as to the characteristics of people; it takes into account the pragmatic and situated dimension and, thus, allows a generalised symmetry. From there, visual methods enable us to submit the collected material to a double treatment of a quantitative analysis of observed bicycles and a qualitative ethnomethodological analysis of bike rental sequences. To better understand the logic and challenges of our method, we present it alongside an analogy with a famous film equivalent – the strategy used by the film-maker Michael Haneke in his heuristic film(s), Funny Games. Despite objectives and content that are obviously completely at odds to one another, the Funny Games film(s) and our own videos share at least five interesting features: twin films, static shots, photomontage, silent films, and rewinding.
DOI: 10.6084/m9.figshare.8948984.v1
title: Funny bikes: a symmetrical study of urban space, vehicular units and mobility through the voyeuristic spokesperson of a video lens

description: This paper presents methodological considerations from a comparative, symmetrical video analysis of cyclist practices in Gothenburg and Toulouse. Video recording pays as much attention to the properties of bicycles as to the characteristics of people; it takes into account the pragmatic and situated dimension and, thus, allows a generalised symmetry. From there, visual methods enable us to submit the collected material to a double treatment of a quantitative analysis of observed bicycles and a qualitative ethnomethodological analysis of bike rental sequences. To better understand the logic and challenges of our method, we present it alongside an analogy with a famous film equivalent – the strategy used by the film-maker Michael Haneke in his heuristic film(s), Funny Games. Despite objectives and content that are obviously completely at odds to one another, the Funny Games film(s) and our own videos share at least five interesting features: twin films, static shots, photomontage, silent films, and rewinding.
DOI: 10.6084/m9.figshare.8948906
title: Lake Neusiedl sample metadata and porewater properties

description: This table contains the metadata and porewater profiles for the sediment and water samples used in the data descriptor: "Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria". Further information on the sampling and experimental procedures can be found in the material and methods section of the paper.
DOI: 10.6084/m9.figshare.8948912
title: All data for [Development of neural specialization for print: Evidence for predictive coding in visual word recognition](Zhao Jing 2019)

description: 1. Data_EEG_N1_forGLM.excel Data underlies the results of the N1 amplitude and latency. 2. Data_EEG_Behavior.excel Data underlies the results of hit rate and reaction time in the color matching task. 3. Data_Behavior_Lexical_decision.excel Data underlies the results of the binomial tests and GLMM analysis. 4. Data_Figure2A_Figure2B_Figure4C.excel<br> Use the Rscript__Figure2A_Figure2B_Figure4C to generate the Figure2A, Figure2B and Figure4C, respectively. 5. EEGdata_preprocessed.mat 1) Matlab data structured: subjects*conditions*channels*timepoints; 2) Use Peakdetection.m to get the mean peak & latency in each group. These scripts provide the grouping and conditions information. 3) Use Figure4A_script, chanlocs.mat and EEGlab topoplot function to generate Figure4A. 4) Use Figure4B_script (with figure4B_script_dependency.zip unzipped in the same folder) to generate Figure4B.<br>
DOI: 10.6084/m9.figshare.8948906.v1
title: Lake Neusiedl sample metadata and porewater properties

description: This table contains the metadata and porewater profiles for the sediment and water samples used in the data descriptor: "Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria". Further information on the sampling and experimental procedures can be found in the material and methods section of the paper.
DOI: 10.6084/m9.figshare.8948813
title: 16S rRNA gene sequence processing statistics and BioSample accession numbers

description: This table contains the BioSample accession numbers and read statistics before during and after bioinformatic processing of the data used in the data descriptor: "Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria". Further information on the bioinformatic processing can be found in the material and methods section of the paper.
DOI: 10.6084/m9.figshare.8948810
title: Отчет DMARC по домену LIBFL.RU за первое полугодие 2019 г.

description: Для домена LIBFL.RU настроен сбор статистики DMARC, которая агрегируется ежемесячно. Собираются цифры по SPF и по DKIM. В таблице приведены данные по месяцам, а также суммарно -- по первым двум кварталам за первое полугодие 2019 года.
DOI: 10.6084/m9.figshare.8948813.v1
title: 16S rRNA gene sequence processing statistics and BioSample accession numbers

description: This table contains the BioSample accession numbers and read statistics before during and after bioinformatic processing of the data used in the data descriptor: "Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria". Further information on the bioinformatic processing can be found in the material and methods section of the paper.
DOI: 10.6084/m9.figshare.8948810.v1
title: Отчет DMARC по домену LIBFL.RU за первое полугодие 2019 г.

description: Для домена LIBFL.RU настроен сбор статистики DMARC, которая агрегируется ежемесячно. Собираются цифры по SPF и по DKIM. В таблице приведены данные по месяцам, а также суммарно -- по первым двум кварталам за первое полугодие 2019 года.
DOI: 10.6084/m9.figshare.8948789
title: S5_NKD181100395_1.fq.gz

description: raw data <br>
DOI: 10.6084/m9.figshare.8948783
title: S5_NKD181100395_2.fq.gz

description: raw data <br>
DOI: 10.6084/m9.figshare.8948783.v1
title: S5_NKD181100395_2.fq.gz

description: raw data of chloroplast genome of <i>Saussurea medusa</i><br>
DOI: 10.6084/m9.figshare.8948789.v1
title: S5_NKD181100395_1.fq.gz

description: raw data of chloroplast genome of <i>Saussurea medusa</i> <br>
DOI: 10.6084/m9.figshare.8948768
title: data

description: store bigwig data
DOI: 10.6084/m9.figshare.8948774
title: grid.21729.3f

description: Network Graphs for institution grid.21729.3f created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8948768.v1
title: data

description: store bigwig data
DOI: 10.6084/m9.figshare.8948546
title: Dataset: Species traits and reduced habitat suitability limit efficacy of climate change refugia in streams

description: Supplementary data for the paper: Species traits and reduced habitat suitability limit efficacy of climate change refugia in streams. Authors: Troia, M.J., Anna, K.L., Niemeyer, J.C. & Giam, X.
DOI: 10.6084/m9.figshare.8948483
title: Single well pumping.xlsx

description: Figure. 13(a-c)
DOI: 10.6084/m9.figshare.8948468
title: Twin well pumping.xlsx

description: Figure 13 (c-d)
DOI: 10.6084/m9.figshare.8948465
title: Additional file 8: of Cross-cultural adaptation, reliability, and validity of the Vertigo symptom scaleâ short form in the centralÂ Kurdish dialect

description: Dataset. Dataset supporting the conclusions of this article (XLSX 37 kb)
DOI: 10.6084/m9.figshare.8948468.v1
title: Twin well pumping.xlsx

description: Figure 13 (c-d)
DOI: 10.6084/m9.figshare.8948462
title: Additional file 7: of Cross-cultural adaptation, reliability, and validity of the Vertigo symptom scaleâ short form in the centralÂ Kurdish dialect

description: Codes and abbreviations of dataset. Description: Clarification of the codes and abbreviations of the dataset supporting the conclusion. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8948459
title: Additional file 6: of Cross-cultural adaptation, reliability, and validity of the Vertigo symptom scaleâ short form in the centralÂ Kurdish dialect

description: Exploratory factor analysis by DWLS, Output of the FACTOR: A computer program, containing the detail of the exploratory factor analysis using polychoric correlation through robust diagonally weighted least squares. (TXT 29 kb)
DOI: 10.6084/m9.figshare.8948465.v1
title: Additional file 8: of Cross-cultural adaptation, reliability, and validity of the Vertigo symptom scaleâ short form in the centralÂ Kurdish dialect

description: Dataset. Dataset supporting the conclusions of this article (XLSX 37 kb)
DOI: 10.6084/m9.figshare.8948462.v1
title: Additional file 7: of Cross-cultural adaptation, reliability, and validity of the Vertigo symptom scaleâ short form in the centralÂ Kurdish dialect

description: Codes and abbreviations of dataset. Description: Clarification of the codes and abbreviations of the dataset supporting the conclusion. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8948456
title: Additional file 5: of Cross-cultural adaptation, reliability, and validity of the Vertigo symptom scaleâ short form in the centralÂ Kurdish dialect

description: Estimation of the AVE and rhoC. contains equation to estimate the average variance extracted (AVE) and composite reliability (rhoC), with the URL of the explaining movie. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8948459.v1
title: Additional file 6: of Cross-cultural adaptation, reliability, and validity of the Vertigo symptom scaleâ short form in the centralÂ Kurdish dialect

description: Exploratory factor analysis by DWLS, Output of the FACTOR: A computer program, containing the detail of the exploratory factor analysis using polychoric correlation through robust diagonally weighted least squares. (TXT 29 kb)
DOI: 10.6084/m9.figshare.8948456.v1
title: Additional file 5: of Cross-cultural adaptation, reliability, and validity of the Vertigo symptom scaleâ short form in the centralÂ Kurdish dialect

description: Estimation of the AVE and rhoC. contains equation to estimate the average variance extracted (AVE) and composite reliability (rhoC), with the URL of the explaining movie. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.8948417
title: Additional file 7 of Genotyping and phylogenetic location of one clinical isolate of Bacillus anthracis isolated from a human in Russia

description: Table S5. Base of sites of nucleotide polymorphisms of 184 B. anthracis strains. (XLSX 4131 kb)
DOI: 10.6084/m9.figshare.8948417.v1
title: Additional file 7 of Genotyping and phylogenetic location of one clinical isolate of Bacillus anthracis isolated from a human in Russia

description: Table S5. Base of sites of nucleotide polymorphisms of 184 B. anthracis strains. (XLSX 4131 kb)
DOI: 10.6084/m9.figshare.8948405
title: Additional file 5 of Genotyping and phylogenetic location of one clinical isolate of Bacillus anthracis isolated from a human in Russia

description: Table S4. Base of sites of nucleotide polymorphisms of 235 Bacillus strains. (XLSX 9267 kb)
DOI: 10.6084/m9.figshare.8948399
title: Additional file 4 of Genotyping and phylogenetic location of one clinical isolate of Bacillus anthracis isolated from a human in Russia

description: Table S3. Strain metadata. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.8948405.v1
title: Additional file 5 of Genotyping and phylogenetic location of one clinical isolate of Bacillus anthracis isolated from a human in Russia

description: Table S4. Base of sites of nucleotide polymorphisms of 235 Bacillus strains. (XLSX 9267 kb)
DOI: 10.6084/m9.figshare.8948396
title: Additional file 3 of Genotyping and phylogenetic location of one clinical isolate of Bacillus anthracis isolated from a human in Russia

description: Table S2. Data on MLVA-31strains of B. anthracis. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8948399.v1
title: Additional file 4 of Genotyping and phylogenetic location of one clinical isolate of Bacillus anthracis isolated from a human in Russia

description: Table S3. Strain metadata. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.8948396.v1
title: Additional file 3 of Genotyping and phylogenetic location of one clinical isolate of Bacillus anthracis isolated from a human in Russia

description: Table S2. Data on MLVA-31strains of B. anthracis. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8948384
title: Additional file 1 of Genotyping and phylogenetic location of one clinical isolate of Bacillus anthracis isolated from a human in Russia

description: Table S1. Data on canSNP 58 strains of B. anthracis. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.8948384.v1
title: Additional file 1 of Genotyping and phylogenetic location of one clinical isolate of Bacillus anthracis isolated from a human in Russia

description: Table S1. Data on canSNP 58 strains of B. anthracis. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.8948345
title: MOESM1 of Depressed systemic arterial compliance and impaired left ventricular midwall performance in aortic stenosis with concomitant type 2 diabetes: a retrospective cross-sectional study

description: Additional file 1. “T2DM” (0 = no diabetes; 1 = T2DM); “cESS” (circumferential end-systolic LV midwall stress) [hPa]; “mwFS” (LV midwall fractional shortening) [%]; “SAC” (systemic arterial compliance)” [mL/m2 per mm Hg].
DOI: 10.6084/m9.figshare.8948345.v1
title: MOESM1 of Depressed systemic arterial compliance and impaired left ventricular midwall performance in aortic stenosis with concomitant type 2 diabetes: a retrospective cross-sectional study

description: Additional file 1. “T2DM” (0 = no diabetes; 1 = T2DM); “cESS” (circumferential end-systolic LV midwall stress) [hPa]; “mwFS” (LV midwall fractional shortening) [%]; “SAC” (systemic arterial compliance)” [mL/m2 per mm Hg].