cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7302/z23f4mhw
title: The Observation and Simulation Dataset for The Response of the Coupled Magnetosphere-Ionosphere System to the 15 August 2015 Solar Wind Dynamic Pressure Enhancement

description: The rapid increases in solar wind dynamic pressure, termed sudden impulses (SIs), compress Earth’s dayside magnetosphere and strongly perturb the coupled Magnetosphere-Ionosphere (M-I) system. The compression of the dayside magnetosphere launches magnetohydrodynamic (MHD) waves, which propagate down to the ionosphere, changing the Auroral Field Aligned Currents (FACs), and into nightside magnetosphere. The global response to the compression front sweeping through the coupled system is not yet fully understood due to the sparseness of the measurements, especially those with the necessary time resolution to resolve the propagating disturbances. That’s why a study including modeling is necessary. On 15 August 2015 at 7.44 UT, Advanced Composition Explorer measured a sudden increase in the solar wind dynamic pressure from 1.11 nPa to 2.55 nPa as shown in Figure-1. 

We use the magnetospheric spacecraft in the equatorial magnetosphere to identify the signatures of magnetosphere response to this SI event and examine the interaction of the propagating disturbances with the M-I system. With the increased time resolution of Active Magnetosphere and Polar Electrodynamics Response Experiment (AMPERE), the FAC pattern and intensity change due to SI can also be studied in more depth. We further use measurements from ground based magnetometer stations to increase our tracking capability for the disturbances in the ionosphere and to improve our understanding of their propagation characteristics. This is the first step in a comprehensive multi-point observation and a global magnetohydrodynamic simulation based investigation of the response of the coupled M-I system to sudden impulses.


description: We used NCAR's Yellowstone Supercomputer Cluster to run SWMF for Magnetosphere-Ionosphere modules. The output for virtual magnetometers, virtual satellites and ionosphere component are provided. We also include output plots created with Spacepy Library.
DOI: 10.7302/wfgt-sz72
title: Swarm Residual Data

description: Statistical study of Swarm observations and two Earth magnetic field models: IGRF-12 and CHAOS-6 categorized by Kp*10 index. Data analysis done on https://viresclient.readthedocs.io/en/latest/ JupyterLab. 
description: Swarm and IGRF/CHAOS residual data set created on https://viresclient.readthedocs.io/en/latest/
DOI: 10.7302/z29c6vnh
title: EEG Datasets for Naturalistic Listening to "Alice in Wonderland"

description: These files contain the raw data and processing parameters to go with the paper "Hierarchical structure guides rapid linguistic predictions during naturalistic listening" by Jonathan R. Brennan and John T. Hale.  These files include the stimulus (wav files), raw data (matlab format for the Fieldtrip toolbox), data processing paramters (matlab), and variables used to align the stimuli with the EEG data and for the statistical analyses reported in the paper.

description: The data comprise 49 human electroencephalography (EEG) datasets collected at the University of Michigan Computational Neurolinguistics Lab. The data were recorded with 61 active electrodes and a Brain Products actiCHamp amplifier at 500 Hz (0.1 to 200 hz band). Participants listened passively to a 12.4 m audiobook recording of the first chapter of Alice's Adventures in Wonderland (librivox.org) and after which they completed a short 8-question comprehension questionnaire. The raw data are stored as MATLAB data structures created by the Fieldtrip toolbox (version 20170322, available at http://fieldtriptoolbox.org/)
DOI: 10.7302/1f9z-6639
title: MHD-EPIC simulation data of the GEM dayside kinetic processes challenge event

description: We use the MHD with embedded particle-in-cell model (MHD-EPIC) to study the Geospace Environment Modeling (GEM) dayside kinetic processes challenge event at 01:50-03:00 UT on 2015-11-18, when the magnetosphere was driven by a steady southward IMF. In the MHD-EPIC simulation, the dayside magnetopause is covered by a PIC code so that the dayside reconnection is properly handled. We compare the magnetic fields and the plasma profiles of the magnetopause crossing with the MMS3 spacecraft observations. Most variables match the observations well in the magnetosphere, in the magnetosheath, and also during the current sheet crossing. The MHD-EPIC simulation produces flux ropes, and we demonstrate that some magnetic field and plasma features observed by the MMS3 spacecraft can be reproduced by a flux rope crossing event. We use an algorithm to automatically identify the reconnection sites from the simulation results. It turns out that there are usually multiple X-lines at the magnetopause. By tracing the locations of the X-lines, we find the typical moving speed of the X-line endpoints is about 70~km/s, which is higher than but still comparable with the ground-based observations. 
description: The GEM dayside kinetic challenge event has been simulated with the University of Michigan's MHD-EPIC, ideal-MHD and Hall-MHD models. This data set contains the simulation results that are used to produce the figures in the paper: Chen, Yuxi, et al. "Magnetohydrodynamic with embedded particle-in-cell simulation of the Geospace Environment Modeling dayside kinetic processes challenge event." arXiv preprint arXiv:2001.04563 (2020).
DOI: 10.7302/3xdz-sq80
title: Raw video data from opportunistic observation of behavioral interaction between wild snakes (Sonora semiannulata)

description: Video documentation of natural behavior in wild snakes is very rare, so film from opportunistic encounters of snake interactions is very valuable to scientific researchers.  Our research team includes leading experts on this species of snake (the Western Groundsnake, Sonora semiannulata), so we worked with the observer to submit a formal description of the encounter to a peer-reviewed journal and make the information available to the broader research community.  
description: This video was opportunistically filmed using a cell phone during a non-contact observation of two snakes interacting in the wild.  The observation occurred on 20 April 2020 around 11:50am behind the Prescott Valley Good Samaritan Nursing Home at 3380 N. Windsong Dr., Prescott Valley, AZ  86314.

Location: 34°35’28.32”N 112°19’39.00”W
Format: H.264, 568 x 320
FPS: 29.97
DOI: 10.7302/z2222rqc
title: Dizziness Scenario Randomized Intervention

description: Data set
description: We conducted a randomized, controlled, educational intervention study that focused on residency trained or board certified emergency physicians practicing in the United States. We developed simulated clinical scenarios and scoring rubrics based on prior work. We recruited practicing emergency physicians at an annual meeting. Study team members blinded to the treatment group assignment reviewed and scored the responses.  Our planned pre-specified primary analysis was the comparison of the total scores for the intervention versus control groups using a Student’s t test.
DOI: 10.7302/tx97-nn12
title: Monthly water balance estimates for the Laurentian Great Lakes from 1950 to 2019 (v1.1)

description: This data set contains a new monthly estimate of the water balance of the Laurentian Great Lakes, the largest freshwater system on Earth, from 1950 to 2019. The source codes and inputs to derive the new estimates are also included in this dataset.

description: The new estimates of the water balance of the Laurentian Great Lakes were generated using the Large Lakes Statistical Water Balance Model (L2SWBM). The L2SWBM used multiple independent data sets to obtain the prior distributions and likelihood functions, which were then assimilated by a Bayesian framework to infer a feasible range of each water balance component. Detail description of the L2SWBM is available in a paper submitted to the Scientific Data journal.
DOI: 10.7302/qc8t-6g78
title: Demand response algorithms to improve electric  power system stability margins

description: The files include all the published paper and presentation source codes. Please install Matpower before running the code. The Matpower version is 5.1, which can be found in https://matpower.org/download/

Talks, papers, and poster in Deep Blue: http://hdl.handle.net/2027.42/150104
description: This work is to develop methods to coordinate flexible loads to improve power system stability. We formulate and solve different optimization problems to determine the optimal dispatches of demand responsive loads. All computations are implemented in Matlab.
DOI: 10.7302/z2hh6h03
title: Neighborhood Effects Active Living Resources

description: Active living resources include spaces and organizations that facilitate physical activity, including 1) park land, 2) recreation areas (including parks, golf courses, amusement parks, beaches and other recreational landmarks); and 3) recreation centers (including gyms, dancing instruction, martial arts instruction, bowling centers, yoga instruction, sports clubs, fitness programs, golf course, pilates instruction, personal trainers, swimming pools, skating rinks, etc.)

Coverage for all data: 10-county Detroit-Warren-Ann Arbor Combined Statistical Area.
description: Each variable within the files has its own methodology. Please refer to the code book for detail.
DOI: 10.7302/rrsv-9f48
title: Computed tomography voxel dataset for ummz:mammals:123037-Tscherskia TRITON-WholeBody

description: Scan of specimen ummz:mammals:123037 (Tscherskia TRITON) - WholeBody. Raw Dataset includes 1601 TIF images (each 715 x 1288 x 1 voxel at 0.0493711582967448 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.;Scan of specimen ummz:mammals:123037 (Tscherskia TRITON) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 715 x 1288 x 1 voxel at 0.049371 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
description: This dataset was created at the University of Michigan Museum of Zoology using a procedure involving computed tomography (CT) hardware. After retrieving the specimen from the museum's archives, staff secured the specimen in the Nikon XT H 225 ST and initiated the scanning process, which included capturing projections by rotating the specimen. The device's associated software CT-Pro-3D and the projections were then used to reconstruct a set of TIFF images, with each corresponding to a slice of the three-dimensional object (one voxel in height). In addition, the software created a .xtek volume file (included here), which contains details about the scanning environment, projections, and reconstructions.
DOI: 10.7302/z29z92t7
title: Data files for manuscript: "THE STAT4/MLL1 EPIGENETIC AXIS REGULATES THE ANTIMICROBIAL FUNCTIONS OF MURINE MACROPHAGES"

description: Data files pertaining to the manuscript entitled: "THE STAT4/MLL1 EPIGENETIC AXIS REGULATES THE ANTIMICROBIAL FUNCTIONS OF MURINE MACROPHAGES"
description: Mammalian cell culture, qPCR, Western Blot, experimental animal models, microscopy, chromatin immunoprecipitation, fluorometry.
DOI: 10.7302/087c-9g95
title: Literature search files for "Psychological Functioning in Pediatric Patients with Single Ventricle Congenital Heart Disease: A Meta-Analysis and Systematic Review"

description: The search data supports a literature review project on Psychological Functioning in Pediatric Patients with Single Ventricle Congenital Heart Disease. The data included are the reproducible search strategies (txt file) and the exported results of all citations from all databases (txt, ris, and.nbib files). Both the original search files and updated search files have been included in the deposit.
description: Comprehensive searches were run in PubMed, Embase, CINAHL, PsycInfo, and Scopus. The search strategies and results of all searches and preparation for screening have been documented. The resulting citations were organized and deduped using the citation manager Endnote X9 (Clarivate Analytics). Unique records were imported into Rayyan for title/abstract, and full-text screening.
DOI: 10.7302/z2cr5r8c
title: Data Supplement: Self-Confirming Price-Prediction Strategies for Simultaneous One-Shot Auctions

description: For each game:
- file in JSON format with raw payoff data
- text file with game-theoretic analysis results
description: Results from empirical game-theoretic analysis of five simultaneous one-shot sealed-bid auction games.

see associated paper for details
DOI: 10.7302/keks-rg16
title: Data for: Global Magnetosphere Response to Solar Wind Dynamic Pressure Pulses during Northward IMF Using the Heliophysics System Observatory

description: Multi-satellite tracking of solar wind dynamic pressure pulse observations through the Earth's magnetosphere enables us to distinguish local changes with propagation signatures.
description: Satellite data are collected from CDAWeb (http://www.cdaweb.gsfc.nasa.gov/), and NGDC (https://satdat.ngdc.noaa.gov/sem/goes/data/full/). The ground-based observations are obtained from SuperMag (http://supermag.jhuapl.edu/).  Events consist in solar winds conditions that meet certain conditions: (1) a sudden increase in the solar wind dynamic pressure, and (2) the solar wind dynamic pressure increase occurs during northward interplanetary magnetic field conditions. In order to detect such events, we developed an algorithm that search for the following conditions: (1) the increase of the SYM-H index must be larger than 6nT
description: (2) the rise time must be in less than 3 minutes
description: (3) the SYM-H increase must occur during northward interplanetary magnetic field that stay for at least 3 minute.
DOI: 10.7302/96kr-q988
title: Multi-Sense embeddings through a word sense disambiguation process

description: This data set is a collection of word similarity benchmarks (RG65, MEN3K, Wordsim 353, simlex999, SCWS, yp130, simverb3500) in their original format and converted into a cosine similarity scale.
In addition, we have two Wikpedia Dumps from 2010 (April) and 2018 (January) in which we provide the original format (raw words), converted using the techniques described in the paper (MSSA, MSSA-D and MSSA-NR) (title in this repository), and also the word embeddings models for 300d and 1000d using a word2vec implementation. A readme.txt is provided with more details for each file.
description: For the benchmark datasets we collected each of them using the original source.
For the wikipedia articles we downloaded their dump directly (https://en.wikipedia.org/wiki/Wikipedia:Database_download)
DOI: 10.7302/keth-yp29
title: JGR Biogeosciences 2019 Gridded and single-point CLM5 dataset

description: Model simulations were conducted to investigate the role of soil moisture on the terrestrial carbon and water cycles. The data are composed of NetCDF files generated by the simulations that contain the data variables analyzed in the paper. ;CLM5 Documentation - http://www.cesm.ucar.edu/models/cesm2/land/.
description: We conducted two sets of simulations with the Community Land Model (CLM) version 5 (file - CLM5BGC_1997-2016_0.5deg.nc): one regional, covering  North America, forced with the CRUNCEP v7 atmospheric dataset, and spanning the period from 01-01-2017 to 31-12-2016
description: and one set of single-point simulations over nine Fluxnet (file - PTCLM_Fluxnet.zip) sites forced with their atmospheric flux measurements.
DOI: 10.7302/z2hm56nj
title: Model results for "Modeling study of  geospace system response to the solar wind dynamic pressure enhancement on March 17, 2015"

description: The global magnetosphere-ionosphere-thermosphere (M-I-T) system is intrinsically coupled and susceptible to external drivers such as solar wind dynamic pressure enhancements. In order to understand the large-scale dynamic processes in the M-I-T system due to the compression from the solar wind, the 17 March 2015 sudden commencement was studied in detail using global numerical models. This data set is comprised of the simulation data
generated from these models.;NOTE: The following changes were made to this dataset on March 28, 2018. First, two mp4 files were added. Second, the symbol representing "degree" was not rendering properly in the README file. The symbols were removed and replaced with the word "degree". Third, the metadata in the "methodology" and "description" fields were revised for content and clarity.  On April 16, 2018 a citation to the corresponding article was added to the metadata record.
description: The simulation data were generated through the use of the following models: the Block Adaptive Tree Solarwind Roe Upwind Scheme (BATS-R-US), Comprehensive Ring Current Model (CRCM), Ridley Ionosphere Model (RIM) and the Global Ionosphere Thermosphere Model (GITM). The simulations were performed on the Yellowstone and Cheyenne Supercomputer Clusters provided by National Center for Atmospheric Research (NCAR) Computational and Information Systems Laboratory, sponsored by the National Science Foundation.
DOI: 10.7302/v73g-tn92
title: Topological transitions of spiral eutectics

description: The data is comprised of 20 .hdf files of the X-ray projections recorded during isothermal annealing of Zn-Mg samples, at discrete time-steps shown below for files names ending in ‘...30141’ to ‘…30161’:

30141: prior to annealing; 30142: 1 min annealing; 30143: 3 min; 30144: 5 min; 30145: 7 min; 30146: 10 min; 30147: 15 min; 30148: 20 min; 30150: 31 min; 30151: 1 hr; 30152: 2 hr; 30153: 3 hr; 30154: 4 hr; 30155: 5 hr; 30156: 6 hr; 30157:7 hr; 30158: 8 hr; 30159:9 hr; 30160: 9 hr, 10 min; 30161: 10 hr

The raw data file is in .hdf format and can be reconstructed into .tiff, e.g., by using the TomoPy toolbox in Python.
description: The data file contains X-ray projection images collected at the National Synchrotron Light Source II in Brookhaven National Laboratory (Upton, NY). Pre-processing of data involved extraction and reconstruction of projection images from the .hdf raw data file using TomoPy toolbox in Python. Then, computer vision algorithms were developed in MATLAB to process (segment) the images followed by 3D visualization and quantitative analysis.
DOI: 10.7302/87a5-pw76
title: Bozo Jenama-speaking (Mande, Mali) village photos

description: Images of villages in Mali in which Bozo Jenama (Mande family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
description: Photography
DOI: 10.7302/vp3q-6d50
title: Magnetically Controlled Ionosphere of Mars: A Model Analysis with Neutral Wind Effects

description: We use our 1-D chemical diffusive model to quantify the physical processes necessary to interpret the day-side ionospheric measurements acquired with radio occultation techniques at the southern high-latitude region of Mars, where the crustal magnetic field is strong and near-vertical in orientation. To interpret the measured ionospheric structure at altitudes where plasma transport dominates, we find it is necessary to impose field-aligned vertical plasma drifts caused by the motion of neutral winds. The most interesting finding of
 this study is that both upward (between 110 m/s and 150 m/s) and downward (between -55 m/s and -120 m/s) drifts are required to maintain the topside Ne distribution comparable with the measured distribution. We also find that a fixed velocity boundary condition at the upper boundary with a sizeable upward ion velocity is needed to encounter any unexpected ion accumulation in the topside ionosphere to limit the Martian ion outflow. Given the complex nature of neutral dynamics and its relationship to plasma transport processes over magnetic anomalies, we consider that a simple model, such as we have developed, is still capable of yielding valuable insights relating to the neutral wind system at Mars.
description: The derived data on the Martian neutral winds and ion drifts are the results of a model analysis of the electron density profiles observed by the MAVEN/ROSE and Mars Express spacecraft. Our model is a one-dimensional chemical diffusive model that self-consistently solves continuity and flux equations to obtain numerical solutions for ion density and flux for each of the six ion species CO2+, CO+, O2+, O+, NO+, and H+. The main source ions in the model are CO2+ and O+, produced in the upper atmosphere by solar EUV radiation and photoelectrons.  A secondary source of ionization resulting from solar wind electron precipitation typically occurs in magnetic cusps is also included in the model. Our model is a coupled finite difference primitive equations model that solves for plasma densities and vertical ion fluxes from an altitude of 100 km to 400 km with an evenly increasing altitude grid of 2 km.  A steady-state numerical solution is obtained for all ions by solving the finite difference versions of the continuity and flux equations using a generalized Newton’s method.
DOI: 10.7302/z2bk19kg
title: RAINBOW All Sky Imager data

description: The aim of the research to study the temporal evolution of the Sub-Auroral Polarizations Streams (SAPS) with multiple instruments. Aurora images are important to identify the electrodynamics in the high latitude ionosphere. Data used in this research were collected and provided by Dr. Jun Liang at University of Calgary, and analyzed by Zihan Wang for the article accompanying this deposit. The data was collected from all sky imagers (ASI) located in Saskatoon, Canada. ;saskrainbow01.sav contains the rgb channels from ASI. It can be opened using IDL.
saskasiskymap.gm5 contains the sky map of the ASI. It shows the geographic location of the figure pixels.
aurora_diff.pro is the procedure to recover the data from saskrainbow01.sav and make plots.
draw_colorbar.pro is the procedure to add a colorbar to the plot.
mlon_smp_towang.pro and rebinsmpkeo_towang.pro can together make keogram plots. 
Run mlon_smp_towang.pro first and then rebinsmpkeo_towang.pro.
description: The ASIs take images and movies of the aurora by looking up at the sky from horizon to horizon above each ASI location. This is accomplished by using a "fish-eye" lens. The cameras take images and movies, gathering all the visible light from the aurora that they can. The cameras are located in a small housing with a dome on top. The electronics and small computers operating the instrument and recording the data are generally in an adjacent building or in a separate environmentally controlled box. In these boxes the electronics, computer, and camera are heated/cooled in order to keep the ASIs operational during the cold winters/hot summers. The figures were then saved as sav file by IDL.