cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7180460.v1
title: Works cited by Jacques Derrida in De la grammatologie

description: This dataset has been superseded by a newer version:<br>Chenoweth, Katie, Rebecca Sutton Koeser, Alexander Baron-Raiffe, Renée Altergott, Chad Córdova, Austin Hancock, Chloé Vettier, Jean Bauer, Benjamin Hicks, Nick Budak, and Kevin McElwee. 2021. <em>Derrida's Margins Datasets</em>. Version 1.1. October 2021. Distributed by DataSpace, Princeton University. https://doi.org/10.6084/10.34770/2ezk-1104.<br><br><b>Overview</b>Derrida’s Margins is a website and online research tool for annotations from the Library of Jacques Derrida, housed at Princeton University Library (PUL). Jacques Derrida is one of the major figures of twentieth-century thought, and his library--which bears the traces of decades of close reading--represents a major intellectual archive. The first phase of the project focused on annotations related to Derrida’s landmark 1967 work <i>De la grammatologie</i> (<i>Of Grammatology</i>).<b><br></b><br><b>Data collection methods</b><b><br></b>Works cited by Derrida in <i>De la grammatologie</i> were documented in a private Zotero library using a custom tagging system to indicate the location and kind of references in a particular work. That data was imported by script into a custom database, creating records for books, sections of books, and journal articles. Records were also created for references in <i>De la grammatologie</i> based on information encoded in the Zotero tags. The book and reference data was further cleaned and refined in the database after import; items with digital editions available from PUL were linked via IIIF. Interventions were documented by project researchers using a custom-built annotation solution, linked to digitized page images from PUL digital editions for this collection. The current phase of the project only includes structured data for annotation interventions and not insertions.<br><b>Data dictionary</b>URIs are used as unique identifiers for references, books, and annotations across all datasets, to allow linking the information. URIs will resolve to the best available representation of that content on the Derrida’s Margins website (in some cases, this is a search result).<br>Datasets generated by export from a public Zotero library generated from the Derrida's Margins project database.<br>
DOI: 10.6084/m9.figshare.21559092.v1
title: Tarp impacts on soil temperature

description: These data show the impacts of tarps on soil temperature, and we present the raw continuous temperature measurements for 1 month during tarp application. We buried iButtons under 1 cm and 10 cm of soil in each plot to measure soil surface and soil temperature, respectively. Temperatures were automatically taken every 30 minutes, and specific time and dates of each soil or soil surface temperature measurement are given in the “Date_soil” and “Date_surface” columns, respectively. <br> For more information, please refer to Kinnebrew et al. 2022 (https://doi.org/10.1080/21683565.2022.2146254) or contact Dr. Kinnebrew at eva.kinnebrew@colostate.edu. <br> Column Names and Explanations: <br> 1. Farm: the farm site (“A,” “B” or “C”) where the plot was located. All farms were located in Chittenden County, Vermont, USA <br> 2. Treatment: indicates the treatment type (silage tarps, clear plastic tarps, or control) <br> 3. Plot_Replicate: the treatment replicate number on each farm (1-6 for each treatment on each farm) <br> 4. Plot_ID: the unique identifier for each spatial plot <br> 5. Temp_soil: temperature in Celsius measured 10 cm below the soil surface <br> 6. Temp_surface: temperature in Celsius measured at the soil surface (1 cm below the surface) <br> 7. Date_soil: date associated with the measurement of soil temperature <br> 8. Date_surface: date associated with the measurement of the soil surface temperature
DOI: 10.6084/m9.figshare.25669491.v1
title: RRM models of Cliff House Sandstone, Chaco Culture National Historical Park (USA)

description: The models in this collection were constructed using Rapid Reservoir Modelling (RRM) prototype software.Jacquemyn, C., Pataki, M.E., Hampson, G.J., Jackson, M.D., Petrovskyy, D., Geiger, S., Marques, C.C., Silva, J.D.M., Judice, S., Rahman, F. and Sousa, M.C., 2021. Sketch-based interface and modelling of stratigraphy and structure in three dimensions. <i>Journal of the Geological Society</i>, <b>178</b>, jgs2020-187, <sub>https://doi.org/10.1144/jgs2020-187</sub>.<br>Rapid Reservoir Modelling (executable and source code) is available at: <sub>https://bitbucket.org/rapidreservoirmodelling/rrm</sub>.<br>The models are part of the following publication.Wu, X., Hampson, G.J., Jacquemyn, C., Hossain, S., Jackson, M.D., Petrovskyy, D. and Geiger, S., in review. Impact of sedimentological heterogeneity on subsurface storage in a net-transgressive, shallow-marine sandstone reservoir analogue: Cliff House Sandstone, New Mexico, USA. <i>Geoenergy</i>, <b>3</b>, geoenergy2024-022. https://doi.org/10.1144/geoenergy2024-022
DOI: 10.6084/m9.figshare.23393267.v2
title: Tidal modulation of Cross-scale Kinetic Energy Fluxes in the Gulf Stream

description: Files to reproduce the figures presented in
DOI: 10.6084/m9.figshare.28448249.v2
title: Code for <b><i>Lower global food system emissions via integrating dietary transition and localized food supply</i></b>

description: Code for <b><i>Lower global food system emissions via integrating dietary transition and localized food supply</i></b>
DOI: 10.6084/m9.figshare.13280372.v3
title: Additional files referenced in paper related to the 'Metagenome-assembled genomes of phytoplankton microbiomes from Arctic and Atlantic Oceans repository'

description: Additional for article 'Metagenome-assembled genomes of phytoplaknton microbiomes from Arctic and Atlantic Oceans'1. Summary of data and binning2. Average nucleotide identity results & plots for MAGs and references from select groups3. Average Amino acid Identity results & plots for MAGs and references4. Tables summarising function of predicted genes, prior to binning. Counts of Pfam domains and GO terms are provided, along with a PCA based on Pfams.<br>5. Tables of taxonomic classification of predicted genes from IMG pipeline<br>6. Coverage of MAGs across samples7. Phylogenomic trees constructed from MAGs and references8. Cross domain associations between eukaryotic and prokaryotic MAGs for polar regions<br>9. Coverage table for each MAG in each sample<br>10. Plots of intersections between enriched terms in control sets of MAGs, and the associated pair investigated in the paper<br><br>
DOI: 10.6084/m9.figshare.3528500.v1
title: Appendix A. Number of RSR:LSR ratios in each category by data set.

description: Number of RSR:LSR ratios in each category by data set.
DOI: 10.6084/m9.figshare.17948639.v1
title: Processed data (CRISPR vs. RNAi)

description: The referenced software pipeline creates and stores this set of intermediate files which are then used to generate figures and supplemental tables for Krill-Burger et al., “Partial inhibition improves identification of cancer vulnerabilities when CRISPR-Cas9 knockout is pan-lethal”. While many of these files are primarily deposited to speedup code runtime by allowing users to load precomputed intermediary files, there are a few useful result tables. Most notably, these results include pan-dependency scores and probability of dependency (Bayesian inference of gene effects used for binary hit calling) for each genetic perturbation dataset as well as predictive models (ensemble of random forests) for each gene effect profile using multi-omics datasets as predictive features. File types are comma separated text files (csv) or R data objects (rds). See the ReadMe.pdf for detailed file descriptions. <br>
DOI: 10.6084/m9.figshare.20405481.v1
title: Content Analysis of Student Reflections 2019

description: Thematic content analysis of student reflections 2019.
DOI: 10.6084/m9.figshare.28524389.v1
title: <b>Thought-action fusion and anxiety: how do they affect obsessive-compulsive symptoms? A moderated-mediated analysis</b>

description: The present study aims to investigate the relationship between intrusive thoughts and obsessive-compulsive (OC) symptoms, by testing the mediated moderation model of the mediating role of thought-action fusion and moderating role of state anxiety. A sample of 1455 university students with the average age of 19.93 years old in China filled out scales measuring intrusive thoughts, thought-action fusion, state anxiety and OC symptoms. The results indicated that thought-action fusion-likelihood plays a mediating role between intrusive thoughts and OC symptoms, and state anxiety could positively moderate the association between thought-action fusion-likelihood fusion and OC symptoms. However, the mediate effect of thought-action fusion-moral was not significant. This study offers new insights into the cognitive pathway of OCD and enriches a theoretical foundation for preventive interventions targeting OC symptoms. Such insights may contribute to enhancing mental health literacy across Chinese society, thereby facilitating a more accurate understanding of obsessive thoughts and alleviating anxiety.
DOI: 10.6084/m9.figshare.28740179.v1
title: Whole Exome Sequencing Data of Extranodal natural killer/T -cell lymphoma (ENKTL) involved left adrenal glands from a 58-year-old female samples from left Adrenal Tumor

description: Design: After the DNA samples pass quality assessment, they undergo random fragmentation using ainvolve end repalr, A-talling, ligation of sequencing adapters, fragment size selection, PCR amplificatiorcompletion of the sequencing lilbrary preparation process. This results in the generation of the final DNSubmitted by: The Second Hospital of Dalian Medical UniversitySample: A 58-year-old female samples from left Adrenal Tumor
DOI: 10.6084/m9.figshare.12871553.v1
title: Supplementary Material for: AGE-Induced Suppression of EZH2 Mediates Injury of Podocytes by Reducing H3K27me3

description: <b><i>Background:</i></b> Chronic hyperglycemia, a pivotal feature of diabetes mellitus (DM), initiates the formation of advanced glycation end products (AGEs) and the dysregulation of epigenetic mechanisms, which may cause injury to renal podocytes, a central feature of diabetic kidney disease (DKD). Previous data of our group showed that AGEs significantly reduce the expression of NIPP1 (nuclear inhibitor of protein phosphatase 1) in podocytes in vitro as well as in human and murine DKD. NIPP1 was shown by others to interact with enhancer of zeste homolog 2 (EZH2), which catalyzes the repressive methylation of H3K27me3 on histone 3. Therefore, we hypothesized that AGEs can directly induce epigenetic changes in podocytes. <b><i>Methods:</i></b> We analyzed the relevance of AGEs on EZH2 expression and activity in a murine podocyte cell line. Cells were treated with 5 mg/mL glycated BSA for 24 h. To determine the meaning of EZH2 suppression, EZH2 activity was inhibited by incubating the cells with the pharmacological methyltransferase inhibitor 3-deazaneplanocin A; EZH2 expression was repressed with siRNA. mRNA expression was analyzed with real-time PCR, and protein expression with Western blot. EZH2 expression and level of H3K27 trimethylation in podocytes of diabetic <i>db</i>/<i>db</i> mice, a mouse model for type 2 DM, were analyzed using immunofluorescence. <b><i>Results:</i></b> Our data demonstrated that AGEs decrease EZH2 expression in podocytes and consequently reduce H3K27me3. This suppression of EZH2 mimicked the AGE effects and caused an upregulated expression of pathological factors that contribute to podocyte injury in DKD. In addition, analyses of <i>db</i>/<i>db</i> mice showed significantly reduced H3K27me3 and EZH2 expression in podocytes. Moreover, the suppression of NIPP1 and EZH2 showed similar effects regarding podocyte injury. <b><i>Conclusions:</i></b> Our studies provide a novel pathway how AGEs contribute to podocyte injury and the formation of the so-called metabolic memory in DKD.
DOI: 10.6084/m9.figshare.13524458.v1
title: FS66_CDS.fasta

description: FS66 nuclear coding sequences in FASTA format
DOI: 10.6084/m9.figshare.23530407.v1
title: Supplementary Material for: Procalcitonin for Detecting Culture-Positive Sepsis in Neonates: A Prospective, Multicenter Study

description: <b><i>Introduction:</i></b> It is unclear if serum procalcitonin (PCT) estimated at sepsis suspicion can help detect culture-positive sepsis in neonates. We evaluated the diagnostic performance of PCT in culture-positive sepsis in neonates. <b><i>Methods:</i></b> This was a prospective study (February 2016 to September 2020) conducted in four level-3 units in India. We enrolled neonates suspected of sepsis in the first 28 days of life. Neonates with birth weight &lt;750 g, asphyxia, shock, and major malformations were excluded. Blood for PCT assay was drawn along with the blood culture at the time of suspicion of sepsis and before antibiotic initiation. The investigators labeled the neonates as having culture-positive sepsis or “no sepsis” based on the culture reports and clinical course. PCT assay was performed by electrochemiluminescence immunoassay, and the clinicians were masked to the PCT levels while assigning the label of sepsis. Primary outcomes were the sensitivity, specificity, and likelihood ratios to identify culture-positive sepsis. <b><i>Results:</i></b> The mean birth weight (SD) and median gestation (IQR) were 2,113 (727) g and 36 (32–38) weeks, respectively. Of the 1,204 neonates with eligible cultures, 155 (12.9%) had culture-positive sepsis. Most (79.4%) were culture-positive within 72 h of birth. The sensitivity, specificity, and positive and negative likelihood ratios at 2 ng/mL PCT threshold were 52.3% (95% confidence interval: 44.1–60.3), 64.5% (60.7–68.1), 1.47 (1.23–1.76), and 0.74 (0.62–0.88), respectively. Adding PCT to assessing neonates with 12.9% pretest probability of sepsis generated posttest probabilities of 18% and 10% for positive and negative test results, respectively. <b><i>Conclusion:</i></b> Serum PCT did not reliably identify culture-positive sepsis in neonates.
DOI: 10.6084/m9.figshare.26565923.v1
title: Additional file 2 of OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch

description: Additional file 2. Table S2: Information of molecular markers.
DOI: 10.6084/m9.figshare.4806871.v1
title: Violence against Peruvian doctors in social rural service

description: Health professionals performing their social health service (SHS) in rural communities could have be in risk of developing depression. Moreover, those who migrate from farther places to perform their SHS could have an increased risk. The objective was to evaluate the association between place of origin and the presence of depressive symptoms, in health professionals performing rural social health service (SHS) in Ancash, Peru <b>Methods:</b> Cross-sectional study. During April 2015, a survey was applied to health professionals performing SHS in the Peruvian Ministry of Health (MINSA) facilities in Ancash. The main outcome was the presence of depressive symptoms, defined as a score ≥2 points in the Patient Health Questionnaire-2. The main exposure was the place of origin, defined as the place where the subjects have completed their undergraduate professional studies (Ancash, Lima city, or others).
DOI: 10.6084/m9.figshare.13625195.v1
title: NNU_All_Database_annotation.xls

description: GO, Kegg annotations for genes with complete ORFs (nelumbo.biocloud.net)<br>
DOI: 10.6084/m9.figshare.14560782.v6
title: Normal cells repel WWOX-negative or -dysfunctional cancer cells via WWOX cell surface epitope 286-299

description: Supplementary spreadsheet for main figures and supplementary figures, and supplementary videos,
DOI: 10.6084/m9.figshare.24502150.v1
title: Audebert et al. 2024. Ecological Zoning for climate policy and global change studies

description: The GeoTiff contains the Holdridge Life Zones - Level I of Audebert et al. 2024. Ecological Zoning for climate policy and global change studies.
DOI: 10.6084/m9.figshare.14838342.v3
title: SDM-Genomic-Testbeds

description: These datasets are generated from cosmic mutation dataset in COSMIC database (GRCh37, version90) with the purpose of evaluating available ontology-based Data Integration engines.They include datasets with different number of records (10k, 100k, 1 million, and 10 million records), attributes (2-15), and duplicated values (25-75 percent of duplicated records and each duplicated value being repeated 10/20 times). <br> The mappings consist of different complexities. <br> The details of generation of these datasets can be found in the papers where they have been used in empirical evaluation: https://www.semantic-web-journal.net/system/files/swj3289.pdf <br> https://www.semantic-web-journal.net/system/files/swj3246.pdf <br> ttps://doi.org/10.1145/3340531.3412881 <br> https://doi.org/10.1145/3477314.3507132 <br>
DOI: 10.6084/m9.figshare.24258598.v2
title: Source data for sea anemone genomes paper

description: This is data required to reproduce the analysis in the cnidarian genomes paper. By adding this file to the code in the source repository at https://doi.org/10.5281/zenodo.8402538 it is possible to run the code.
DOI: 10.6084/m9.figshare.28424993.v1
title: PCR data

description: PCR data
DOI: 10.6084/m9.figshare.5537338.v1
title: Myogenic Artifact Dry EEG Datasets

description: Datasets containing EEG.mat structures with raw (unprocesed) data, channel locations, and data characteristics. Data contains myogenic (jaw) artifacts used to train and test SVM classifier.
DOI: 10.6084/m9.figshare.6265496.v1
title: Segmented endocast of 'Chirodipterus' australis BMNH P56035

description: Segmented endocast of 'Chirodipterus' australis BMNH P56035
DOI: 10.6084/m9.figshare.868866.v3
title: Images of 3D printing output for Scuplexity - Sculptures of Complexity - Sculpexity

description: Images of the output from a 3D printer produced as part of the project Sculpexity - Scultures of Complexity. Article to appear in European Physics Letters on 9th December 2013. Also available on arXiv.org. These images are available under the Creative Commons licence with attribution - CC_BY.<br>Licensees may copy, distribute, display and perform the work and make derivative works based on it<br>only if they give the author or licensor the credits in the manner specified by these. If used, please cite article "Sculplexity: Sculpures of Complexity and 3D printing" in European Physics Letters 104 (2013) 48001. doi 10.1209/0295-5075/104/48001 Best top views are<br>20131111_170932.jpg<br>20131111_170123.jpg<br>20131111_170125.jpg<br>and for bottom view try<br>20131111_170223.jpg. Picture names "Tim Evans ..." contain shots of me holding the output from the project.
DOI: 10.6084/m9.figshare.7297742.v1
title: NicholsonRicketts2018_NativeBeeVisits_yieldMetrics_data.csv

description: Please see corresponding metadata document for variable descriptions. These data are from a 2 year pollination limitation experiment (2014 N = 9, 2015 N = 8) on Vermont, USA highbush blueberry (Vaccinium corymbosum L.) farms. There are two types of data contained: average visitation rates and average yield variables. For visitation rates we present values for all native bees, and rates disaggregated into morphospecies groups (see Table 1 in Nicholson & Ricketts 2018). For yield variables we present average values of seed set (and its coefficient of variation), berry mass (and its coefficient of variation), fruit set and date of 25% harvest. These data will produce Figures 1, 2, and 4 in Nicholson & Ricketts 2018.
DOI: 10.6084/m9.figshare.9729914.v2
title: Data_Solution-Focused Group in People with SCI

description: <b>Study design</b>: A pre-post study<b>Objective</b>: Conduct a pilot study of the solution-focused group therapy (SFGT) on pain management for people with spinal cord injury (SCI).<b>Setting</b>: Medical and rehabilitation centers in Taiwan. <b>Method</b>: 26 people with SCI and neuropathic pain join SFGT, once a week 90 minutes for 6 weeks, to achieve pain management goals of accepting pain and committing their new-life goals according to their successful experience.Using 6 scales to be the pre-post testing, include pain intensity (0-10 numeric rating scale), brief pain inventory-pain inference, chronic pain self-efficacy scale, pain fear (0-10 numeric rating scale), depression (patient health questionnaire-9), demoralization (demoralization scale), post-traumatic growth inventory and life quality (WHOQOL-BREF). <b>Results</b>: The pain intensity perceived by participants was significantly reduced from the intervention according to the mean (95% CI) reduction in pain from pre to post assessment was -1.12/10 points (5.35 to 4.23). And the pain self-efficacy significantly improved on the mean (95% CI) increase in pain self-efficacy from pre to post assessment was +11/130 points (57.5 to 68.5).
DOI: 10.17632/z732f9pwxt.1
title: Trash Detection Dataset

description: Data object detection dataset.It contains annotated images of different types of waste, aiming to support the development of automated waste sorting systems using computer vision techniques.

The dataset includes 7 classes: BIODEGRADABLE, CARDBOARD, GLASS, METAL, PAPER, PLASTIC, and a general class labeled ALL. Each image is annotated with bounding boxes in YOLO format, specifying the location and class of each waste item.
DOI: 10.6084/m9.figshare.24153348.v1
title: Neural landscape diffusion resolves conflicts between needs across time

description: This dataset contains spiking data (following spike sorting) and corresponding behavioral data. This data can be loaded using code found at https://github.com/erichamc/brainwide-npix. The dataset is compressed and will expand to ~11.4GB.
DOI: 10.6084/m9.figshare.7572536.v1
title: 70P04

description: Row data of the subject
DOI: 10.6084/m9.figshare.25903765.v1
title: <b>Scoring of soybean leaves</b>

description: Soybean leaves were scored as highly resistant, moderately susceptible, and highly susceptible based on their symptoms. Highly susceptible plants had yellow mosaic virus symptoms on more than 50% of the plant leaves whereas, highly resistant plant showed no symptoms at all.
DOI: 10.6084/m9.figshare.26362984.v1
title: <b>Real-Road Driving Experiments</b>Data extracted for all participants

description: This research focuses on forecasting driver fatigue by utilizing physiological indicators and exploring the connection between these indicators and driver fatigue. To achieve this, real-world driving experiments were carried out with 16 participants, employing non-intrusive techniques to gather physiological data such as electrodermal activity, heart rate, and skin temperature. Neural Networks were then used to predict fatigue levels.
DOI: 10.6084/m9.figshare.27901980.v1
title: UPR TF meanRank

description: UPR TF meanRank