cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23691114
title: Additional file 1 of Independent flavonoid and anthocyanin biosynthesis in the flesh of a red-fleshed table grape revealed by metabolome and transcriptome co-analysis

description: Supplementary Material 1: Table S1: Primer sequences for genes used in assays in this study. Table S2: List of metabolites detected and quantified in the skin and flesh of ‘Mio Red’ grape. Table S3: List of metabolites differentially accumulated in the skin and flesh of ‘Mio red’ grape. Table S4: Relative contents of the 6 anthocyanin derivatives identified in the skin and flesh of ‘Mio Red’ grape. Table S5: Quality check of the raw data from the RNA-seq. Table S6: Overview of transcriptome sequencing dataset and mapping statistics of ‘Mio Red’ grape. Table S7: Expression profile (FPKM values) of the 23,786 genes detected in the skin and flesh of ‘Mio Red’ grape. Table S8: Identification of structural genes in flavonoid-biosynthesis pathway of ‘Mio Red’ grape. Table S9: GenBank accession numbers of the transcription factors in the phylogenetic tree analysis.
DOI: 10.6084/m9.figshare.21594107
title: Additional file 1 of Exploring the pharmacological mechanism of Shengjing capsule on male infertility by a network pharmacology approach

description: Additional file 1:
DOI: 10.5281/zenodo.10637063
title: LIVING STANDARDS OF THE POPULATION LIVING IN THE SOUTHERN ARAL SEA REGION (USING THE EXAMPLE OF MUYNAK DISTRICT)
DOI: 10.5281/zenodo.10637064
title: LIVING STANDARDS OF THE POPULATION LIVING IN THE SOUTHERN ARAL SEA REGION (USING THE EXAMPLE OF MUYNAK DISTRICT)
DOI: 10.5281/zenodo.10637080
title: DIE DEKLINATION DER ADJEKTIVE
DOI: 10.5281/zenodo.10637081
title: DIE DEKLINATION DER ADJEKTIVE
DOI: 10.6084/m9.figshare.14921120
title: Additional file 2 of Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization

description: Additional file 2: R Code. R and R markdown code for all simulation studies and data analysis.
DOI: 10.6084/m9.figshare.23167756.v1
title: Additional file 3 of Genetic diversity and population divergence of Leonurus japonicus and its distribution dynamic changes from the last interglacial to the present in China

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.23167789
title: Additional file 2 of A back propagation neural network approach to estimate the glomerular filtration rate in an older population

description: Additional file 1: Table S2.
DOI: 10.6084/m9.figshare.21594116.v1
title: Additional file 4 of Exploring the pharmacological mechanism of Shengjing capsule on male infertility by a network pharmacology approach

description: Additional file 4:
DOI: 10.3886/e121922v1-145949
title: Data and Code for: Social Media, News Consumption, and Polarization: Evidence from a Field Experiment

description: Does the consumption of ideologically congruent news on social media exacerbate polarization? I estimate the effects of social media news exposure by conducting a large field experiment randomly offering participants subscriptions to conservative or liberal news outlets on Facebook. I collect data on the causal chain of media effects: subscriptions to outlets, exposure to news on Facebook, visits to online news sites, and sharing of posts, as well as changes in political opinions and attitudes. Four main findings emerge. First, random variation in exposure to news on social media substantially affects the slant of news sites individuals visit. Second, exposure to counter-attitudinal news decreases negative attitudes toward the opposing political party. Third, in contrast to the effect on attitudes, I find no evidence that the political leanings of news outlets affect political opinions. Fourth, Facebook's algorithm is less likely to supply individuals with posts from counter-attitudinal outlets, conditional on individuals subscribing to them. Together, the results suggest that social media algorithms may limit exposure to counter-attitudinal news and thus increase polarization.<br>
DOI: 10.6084/m9.figshare.14921120.v1
title: Additional file 2 of Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization

description: Additional file 2: R Code. R and R markdown code for all simulation studies and data analysis.
DOI: 10.6084/m9.figshare.21594116
title: Additional file 4 of Exploring the pharmacological mechanism of Shengjing capsule on male infertility by a network pharmacology approach

description: Additional file 4:
DOI: 10.6084/m9.figshare.21594125
title: Additional file 7 of Exploring the pharmacological mechanism of Shengjing capsule on male infertility by a network pharmacology approach

description: Additional file 7:
DOI: 10.6084/m9.figshare.21594107.v1
title: Additional file 1 of Exploring the pharmacological mechanism of Shengjing capsule on male infertility by a network pharmacology approach

description: Additional file 1:
DOI: 10.6084/m9.figshare.23167756
title: Additional file 3 of Genetic diversity and population divergence of Leonurus japonicus and its distribution dynamic changes from the last interglacial to the present in China

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.23167789.v1
title: Additional file 2 of A back propagation neural network approach to estimate the glomerular filtration rate in an older population

description: Additional file 1: Table S2.
DOI: 10.6084/m9.figshare.23691217.v1
title: Additional file 1 of Lung cancer-derived exosomal miR-132-3p contributed to interstitial lung disease development

description: Additional file 1. Supplementary figures and information.
DOI: 10.6084/m9.figshare.23167874
title: Additional file 1 of Diversity and correlation analysis of endophytes and metabolites of Panax quinquefolius L. in various tissues

description: Additional file 1: Table S1. Total metabolites of positive and negative ion patterns identified from different parts of Panax quinquefolius L.
DOI: 10.6084/m9.figshare.23167874.v1
title: Additional file 1 of Diversity and correlation analysis of endophytes and metabolites of Panax quinquefolius L. in various tissues

description: Additional file 1: Table S1. Total metabolites of positive and negative ion patterns identified from different parts of Panax quinquefolius L.
DOI: 10.6084/m9.figshare.21594083.v1
title: Additional file 3 of The association between endometriosis and risk of endometrial cancer and breast cancer: a meta-analysis

description: Additional file 3. Supplementary files NO.3 Stata analysis.
DOI: 10.5281/zenodo.10622470
title: Coordinate files from: Mapping Structural and Dynamic Divergence Across the MBOAT Family

description: Coordinate files from the first frame of coarse-grained (CG) and atomistic molecular dynamics (MD) simulations of the Membrane Bound O-acyltransferase (MBOAT) family.

MD simulations were run for HHAT, PORCN, GOAT, DltB, ACAT1 and DGAT1. CG simulations were run for 10 x 15 μs. Atomistic simulations were run for 5 x 200 ns. 

File description:

Directories for each protein are listed with the suffix CG or atomistic used to indicate the simulation resolution. 

md_fit_firstframe_X.gro - GROMACS structure file for the first frame of replicate X.
DOI: 10.5281/zenodo.10622471
title: Coordinate files from: Mapping Structural and Dynamic Divergence Across the MBOAT Family

description: Coordinate files from the first frame of coarse-grained (CG) and atomistic molecular dynamics (MD) simulations of the Membrane Bound O-acyltransferase (MBOAT) family.

MD simulations were run for HHAT, PORCN, GOAT, DltB, ACAT1 and DGAT1. CG simulations were run for 10 x 15 μs. Atomistic simulations were run for 5 x 200 ns. 

File description:

Directories for each protein are listed with the suffix CG or atomistic used to indicate the simulation resolution. 

md_fit_firstframe_X.gro - GROMACS structure file for the first frame of replicate X.
DOI: 10.6084/m9.figshare.13129037
title: Arctic COSMO-CLM hindcast 1992

description: COSMO-CLM Russian Arctic climate dataset
DOI: 10.6084/m9.figshare.13129037.v8
title: Arctic COSMO-CLM hindcast 1992

description: COSMO-CLM Russian Arctic climate dataset
DOI: 10.6084/m9.figshare.13129037.v7
title: Arctic COSMO-CLM hindcast 1992

description: COSMO-CLM Russian Arctic climate dataset
DOI: 10.34740/kaggle/dsv/7591039
title: Trending Youtube Video Statistics (113 Countries)
DOI: 10.6084/m9.figshare.25188929
title: Bay of Quinte Long Reach - Cladoceran Size Structure Paleolimnology Project

description: These data were collected as a part of a larger paleolimnological assessment of the Bay of Quinte, Lake Ontario. The goal of these specific data was to measure change in cladoceran size structure over time in response to historical trophic alteration. We wanted to identify the best indicators of trophic change that could then be applied to further paleolimnological investigations of the Bay of Quinte and coupled with other assemblage metrics (e.g., relative abundance, diversity, and concentration) to provide a comprehensive overview of long-term change.<br>These data were generated and analysed as part of the following work:<br>Armstrong, I., & Cumming, B. F. (Submitted) Novel methods in cladoceran size structure analysis reveal ~60 years of trophic change in a sediment core from Bay of Quinte, Lake Ontario. <i>Freshwater Biology</i>
DOI: 10.6084/m9.figshare.25188929.v1
title: Bay of Quinte Long Reach - Cladoceran Size Structure Paleolimnology Project

description: These data were collected as a part of a larger paleolimnological assessment of the Bay of Quinte, Lake Ontario. The goal of these specific data was to measure change in cladoceran size structure over time in response to historical trophic alteration. We wanted to identify the best indicators of trophic change that could then be applied to further paleolimnological investigations of the Bay of Quinte and coupled with other assemblage metrics (e.g., relative abundance, diversity, and concentration) to provide a comprehensive overview of long-term change.<br>These data were generated and analysed as part of the following work:<br>Armstrong, I., & Cumming, B. F. (Submitted) Novel methods in cladoceran size structure analysis reveal ~60 years of trophic change in a sediment core from Bay of Quinte, Lake Ontario. <i>Freshwater Biology</i>
DOI: 10.6084/m9.figshare.24058650
title: Legacy Analysis of Dark Matter Annihilation from the Milky Way Dwarf Spheroidal Galaxies with 14 Years of Fermi-LAT Data: Data Products

description: This repository contains data products from the 14 year Fermi-LAT analysis of the Milky Way dSphs as described in McDaniel et al (2023). The included data products are the SED fits files and 2D TS profiles in the WIMP mass and cross section space. These are available for dSphs as well as the blank-field analysis, using both the standard likelihood and the weighted likelihood approach (see Appendix A). CSV data files are included containing relevant information about the dSphs (see table 1 of McDaniel+2023) and blank fields (RA & Dec).Also included is a python Jupyter Notebook to show basic usage of the data products. For Example, plotting the SED likelihoods, converting the SED likelihood to DM space, creating a combined TS profile, obtaining upper limits, etc. This is also stored as a static html file for easier viewing.<br>SEDs are stored as fits files in the output format of fermipy (see https://fermipy.readthedocs.io/en/latest/advanced/sed.html)TS profiles are stored as numpy arrays covering 40 logarithmically spaced mass values over the 1 GeV - 1 TeV mass range and 60 logarithmically spaced cross-section values covering the 10^-28 to 10^-22 cm^3/s cross section range. TS profiles including the J-factor prior and without are available, and are labeled with "Jprior" or "noprior" respectively.<b>Version Changelog:</b><b>Version 2:</b>Fixed J factor values in dSphs.csv that did not match Table 1 in the publication.
DOI: 10.5517/ccdc.csd.cc2ch76b
title: CCDC 2189381: Experimental Crystal Structure Determination

description: Related Article: Mithilesh Kumar Nayak, Benedict J. Elvers, Sakshi Mehta, Ivo Krummenacher, Abhishake Mondal, Holger Braunschweig, Carola Schulzke, Prince Ravat, Anukul Jana|2024|Chem.Commun.|60|1739|doi:10.1039/D3CC05779H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ch77c
title: CCDC 2189382: Experimental Crystal Structure Determination

description: Related Article: Mithilesh Kumar Nayak, Benedict J. Elvers, Sakshi Mehta, Ivo Krummenacher, Abhishake Mondal, Holger Braunschweig, Carola Schulzke, Prince Ravat, Anukul Jana|2024|Chem.Commun.|60|1739|doi:10.1039/D3CC05779H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ch78d
title: CCDC 2189383: Experimental Crystal Structure Determination

description: Related Article: Mithilesh Kumar Nayak, Benedict J. Elvers, Sakshi Mehta, Ivo Krummenacher, Abhishake Mondal, Holger Braunschweig, Carola Schulzke, Prince Ravat, Anukul Jana|2024|Chem.Commun.|60|1739|doi:10.1039/D3CC05779H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ch79f
title: CCDC 2189384: Experimental Crystal Structure Determination

description: Related Article: Mithilesh Kumar Nayak, Benedict J. Elvers, Sakshi Mehta, Ivo Krummenacher, Abhishake Mondal, Holger Braunschweig, Carola Schulzke, Prince Ravat, Anukul Jana|2024|Chem.Commun.|60|1739|doi:10.1039/D3CC05779H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ch7bg
title: CCDC 2189385: Experimental Crystal Structure Determination

description: Related Article: Mithilesh Kumar Nayak, Benedict J. Elvers, Sakshi Mehta, Ivo Krummenacher, Abhishake Mondal, Holger Braunschweig, Carola Schulzke, Prince Ravat, Anukul Jana|2024|Chem.Commun.|60|1739|doi:10.1039/D3CC05779H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ch7ch
title: CCDC 2189386: Experimental Crystal Structure Determination

description: Related Article: Mithilesh Kumar Nayak, Benedict J. Elvers, Sakshi Mehta, Ivo Krummenacher, Abhishake Mondal, Holger Braunschweig, Carola Schulzke, Prince Ravat, Anukul Jana|2024|Chem.Commun.|60|1739|doi:10.1039/D3CC05779H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ch7dj
title: CCDC 2189387: Experimental Crystal Structure Determination

description: Related Article: Mithilesh Kumar Nayak, Benedict J. Elvers, Sakshi Mehta, Ivo Krummenacher, Abhishake Mondal, Holger Braunschweig, Carola Schulzke, Prince Ravat, Anukul Jana|2024|Chem.Commun.|60|1739|doi:10.1039/D3CC05779H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ch7gl
title: CCDC 2189389: Experimental Crystal Structure Determination

description: Related Article: Mithilesh Kumar Nayak, Benedict J. Elvers, Sakshi Mehta, Ivo Krummenacher, Abhishake Mondal, Holger Braunschweig, Carola Schulzke, Prince Ravat, Anukul Jana|2024|Chem.Commun.|60|1739|doi:10.1039/D3CC05779H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cjmj2
title: CCDC 2190724: Experimental Crystal Structure Determination

description: Related Article: Mithilesh Kumar Nayak, Benedict J. Elvers, Sakshi Mehta, Ivo Krummenacher, Abhishake Mondal, Holger Braunschweig, Carola Schulzke, Prince Ravat, Anukul Jana|2024|Chem.Commun.|60|1739|doi:10.1039/D3CC05779H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2db4rn
title: CCDC 2214291: Experimental Crystal Structure Determination

description: Related Article: Mithilesh Kumar Nayak, Benedict J. Elvers, Sakshi Mehta, Ivo Krummenacher, Abhishake Mondal, Holger Braunschweig, Carola Schulzke, Prince Ravat, Anukul Jana|2024|Chem.Commun.|60|1739|doi:10.1039/D3CC05779H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fjbmy
title: CCDC 2250030: Experimental Crystal Structure Determination

description: Related Article: Bo Zhang, Yuanyuan Wang, Kaiwen Lin, Yinhua Zhou, Qing Zhang|2024|J.Mater.Chem.C|12|2016|doi:10.1039/D3TC03747A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fmnb2
title: CCDC 2253214: Experimental Crystal Structure Determination

description: Related Article: Bo Zhang, Yuanyuan Wang, Kaiwen Lin, Yinhua Zhou, Qing Zhang|2024|J.Mater.Chem.C|12|2016|doi:10.1039/D3TC03747A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26kdz5
title: CCDC 2042527: Experimental Crystal Structure Determination

description: Related Article: Junghwan Kim, Chungryeol Kim, Dongwhan Lee|2024|Chem.Commun.|60|1762|doi:10.1039/D3CC06023C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g1y1j
title: CCDC 2265977: Experimental Crystal Structure Determination

description: Related Article: Tapasi Chand, Princi Gupta, Nehali Oza, Manmohan Kapur|2024|Chem.Commun.|60|1770|doi:10.1039/D3CC06050K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26kf07
title: CCDC 2042528: Experimental Crystal Structure Determination

description: Related Article: Junghwan Kim, Chungryeol Kim, Dongwhan Lee|2024|Chem.Commun.|60|1762|doi:10.1039/D3CC06023C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10637130
title: Data for McTavish et al. Current status of biological control of introduced Phragmites in Canada

description: Data for McTavish et al. publication "Current status of biological control of introduced Phragmites in Canada". This manuscript reports on the first several years of the biological control program for introduced Phragmites (Phragmites australis australis) in Canada. The study includes an overview of long-term monitoring data across 30 release sites, an investigation of within-site distribution of agent feeding damage, and an experiment to determine the optimal release densities for the biological control agents. 

Tab 1 covers basic monitoring data from the first year of release, including the site name, release year, and the number of damaged stems found in a 0.65 m diameter sampling plot centered on each release point.

Tab 2 covers follow-up monitoring data at a patch level from years two and three. The numbers of damaged stems are recorded across a series of 4 x 1 m monitoring intervals. Data includes the monitoring year, the number of monitoring intervals per site, the damage coverage (i.e., % of monitoring intervals that have damaged stems), mean damage +/- SD (i.e., the number of damaged stems per square meter in the monitoring intervals), the Variance to Mean Ratio for damage across the site, and the raw counts of damaged stems found in each of the monitoring intervals.

Tab 3 contains similar monitoring data to Tab 2 for seven sites but includes monitoring data collected from either the patch interior or perimeter for comparison. 

Tab 4 contains data from an experiment assessing the impacts of different larval release densities on damage outcomes. Data include site names, the larval density treatment level, the number of damaged stems found in a 0.65 m diameter plot around the release plus during a 2 minute timed search around the plot, the density of living introduced Phragmites stems found around the release point, and the mean height of those stems.