cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/z2vkgt
title: Review of the genera of Conoderinae (Coleoptera, Curculionidae) from North America, Central America, and the Caribbean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Anzaldo, Salvatore S. (2017): Review of the genera of Conoderinae (Coleoptera, Curculionidae) from North America, Central America, and the Caribbean. ZooKeys 683: 51-138, DOI: http://dx.doi.org/10.3897/zookeys.683.12080, URL: http://dx.doi.org/10.3897/zookeys.683.12080
DOI: 10.15468/zs3zq4
title: A new species of the genus Capoeta Valenciennes, 1842 from the Caspian Sea basin in Iran (Teleostei, Cyprinidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jouladeh-Roudbar, Arash, Eagderi, Soheil, Ghanavi, Hamid Reza, Doadrio, Ignacio (2017): A new species of the genus Capoeta Valenciennes, 1842 from the Caspian Sea basin in Iran (Teleostei, Cyprinidae). ZooKeys 682: 137-155, DOI: http://dx.doi.org/10.3897/zookeys.682.12670, URL: http://dx.doi.org/10.3897/zookeys.682.12670
DOI: 10.15468/zxgf7v
title: Diversity and biogeography of land snails (Mollusca, Gastropoda) in the limestone hills of Perak, Peninsular Malaysia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Foon, Junn Kitt, Clements, Gopalasamy Reuben, Liew, Thor-Seng (2017): Diversity and biogeography of land snails (Mollusca, Gastropoda) in the limestone hills of Perak, Peninsular Malaysia. ZooKeys 682: 1-94, DOI: http://dx.doi.org/10.3897/zookeys.682.12999, URL: http://dx.doi.org/10.3897/zookeys.682.12999
DOI: 10.15468/13hvpq
title: Demosponge diversity from North Sulawesi, with the description of six new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Calcinai, Barbara, Bastari, Azzurra, Bavestrello, Giorgio, Bertolino, Marco, Horcajadas, Santiago Bueno, Pansini, Maurizio, Makapedua, Daisy M., Cerrano, Carlo (2017): Demosponge diversity from North Sulawesi, with the description of six new species. ZooKeys 680: 105-150, DOI: http://dx.doi.org/10.3897/zookeys.680.12135, URL: http://dx.doi.org/10.3897/zookeys.680.12135
DOI: 10.15468/4afnoc
title: A review of the Cercyon Leach (Coleoptera, Hydrophilidae, Sphaeridiinae) of the Greater Antilles

description: This dataset contains the digitized treatments in Plazi based on the original journal article Arriaga-Varela, Emmanuel, Seidel, Matthias, Deler-Hernandez, Albert, Viktor Senderov,, Fikacek, Martin (2017): A review of the Cercyon Leach (Coleoptera, Hydrophilidae, Sphaeridiinae) of the Greater Antilles. ZooKeys 681: 39-93, DOI: http://dx.doi.org/10.3897/zookeys.681.12522, URL: http://dx.doi.org/10.3897/zookeys.681.12522
DOI: 10.15468/aq6dbk
title: A new species of Microcharon from marine interstitial waters, Shizuoka, Japan (Isopoda, Lepidocharontidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kim, Jeongho, Lee, Wonchoel, Karanovic, Ivana (2017): A new species of Microcharon from marine interstitial waters, Shizuoka, Japan (Isopoda, Lepidocharontidae). ZooKeys 680: 13-31, DOI: http://dx.doi.org/10.3897/zookeys.680.12048, URL: http://dx.doi.org/10.3897/zookeys.680.12048
DOI: 10.15468/bksx7r
title: Two new Oribatid mites from Costa Rica, Mixacarusturialbaiensis sp. n. and Paulianacaruscostaricensis sp. n. (Acari, Oribatida, Lohmanniidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fernandez, Nestor, Theron, Pieter, Leiva, Sergio, Tiedt, Louwrens (2017): Two new Oribatid mites from Costa Rica, Mixacarusturialbaiensis sp. n. and Paulianacaruscostaricensis sp. n. (Acari, Oribatida, Lohmanniidae). ZooKeys 680: 33-56, DOI: http://dx.doi.org/10.3897/zookeys.680.13213, URL: http://dx.doi.org/10.3897/zookeys.680.13213
DOI: 10.15468/in4ael
title: Taxonomic revision of imitating carpenter ants, CamponotussubgenusMyrmopytia (Hymenoptera, Formicidae) of Madagascar, using morphometry and qualitative traits

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rasoamanana, Nicole, Csosz, Sandor, Fisher, Brian L. (2017): Taxonomic revision of imitating carpenter ants, CamponotussubgenusMyrmopytia (Hymenoptera, Formicidae) of Madagascar, using morphometry and qualitative traits. ZooKeys 681: 119-152, DOI: http://dx.doi.org/10.3897/zookeys.681.13187, URL: http://dx.doi.org/10.3897/zookeys.681.13187
DOI: 10.15468/jgyi0k
title: An elusive Neotropical giant, Hondurantemnachespiritoi gen. n. & sp. n. (Antemninae, Mantidae): a new lineage of mantises exhibiting an ontogenetic change in cryptic strategy

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rodrigues, Henrique M., Rivera, Julio, Reid, Neil, Svenson, Gavin J. (2017): An elusive Neotropical giant, Hondurantemnachespiritoi gen. n. & sp. n. (Antemninae, Mantidae): a new lineage of mantises exhibiting an ontogenetic change in cryptic strategy. ZooKeys 680: 73-104, DOI: http://dx.doi.org/10.3897/zookeys.680.11162, URL: http://dx.doi.org/10.3897/zookeys.680.11162
DOI: 10.15468/kmh7bk
title: New Curculionoidea (Coleoptera) records for Quebec, Canada

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tonnancour, Pierre de, Anderson, Robert S., Bouchard, Patrice, Chantal, Claude, Dumont, Stephane, Vigneault, Robert (2017): New Curculionoidea (Coleoptera) records for Quebec, Canada. ZooKeys 681: 95-117, DOI: http://dx.doi.org/10.3897/zookeys.681.12469, URL: http://dx.doi.org/10.3897/zookeys.681.12469
DOI: 10.15468/l8nqz3
title: Search for mesophotic octocorals (Cnidaria, Anthozoa) and their phylogeny: I. A new sclerite-free genus from Eilat, northern Red Sea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Benayahu, Yehuda, McFadden, Catherine S., Shoham, Erez (2017): Search for mesophotic octocorals (Cnidaria, Anthozoa) and their phylogeny: I. A new sclerite-free genus from Eilat, northern Red Sea. ZooKeys 680: 1-11, DOI: http://dx.doi.org/10.3897/zookeys.680.12727, URL: http://dx.doi.org/10.3897/zookeys.680.12727
DOI: 10.5281/zenodo.6913479
title: Outputs of the paper "Blockchain-enabled Server-less Federated Learning"

description: This repository contains the different outputs generated for the paper "Blockchain-enabled Server-less Federated Learning", submitted to Computer Networks (COMNET) journal. Two types of outputs are provided: <strong>Blockchain queue simulator (output_queue_simulator):</strong> results of the simulations done in the batch-service queue simulator (https://github.com/fwilhelmi/batch_service_queue_simulator) to characterize the queue latency of blockchain applications. <strong>Tensorflow (output_tensorflow):</strong> results of the simulations done in Tensorflow Federated (TFF), resulting from the application of different models to the federated EMNIST dataset. Each folder also includes the scripts used to execute the corresponding simulations. For more details, see the repository in https://github.com/fwilhelmi/blockchain_enabled_federated_learning
description: Second version submitted to Elsevier Computer Networks (COMNET), which includes new results for FNN and CNN models on EMNIST and complementary results on the delay of different blockchained federated models (e.g., VGG19, ResNet50).
DOI: 10.5281/zenodo.6913380
title: Outputs of the paper "Blockchain-enabled Server-less Federated Learning"

description: This repository contains the different outputs generated for the paper "Blockchain-enabled Server-less Federated Learning", submitted to Computer Networks (COMNET) journal. Two types of outputs are provided: <strong>Blockchain queue simulator (output_queue_simulator):</strong> results of the simulations done in the batch-service queue simulator (https://github.com/fwilhelmi/batch_service_queue_simulator) to characterize the queue latency of blockchain applications. <strong>Tensorflow (output_tensorflow):</strong> results of the simulations done in Tensorflow Federated (TFF), resulting from the application of different models to the federated EMNIST dataset. Each folder also includes the scripts used to execute the corresponding simulations. For more details, see the repository in https://github.com/fwilhelmi/blockchain_enabled_federated_learning
description: Second version submitted to Elsevier Computer Networks (COMNET), which includes new results for FNN and CNN models on EMNIST and complementary results on the delay of different blockchained federated models (e.g., VGG19, ResNet50).
DOI: 10.6084/m9.figshare.20401974
title: Repository Of BInders to Nucleic acids (ROBIN)

description: <strong>Repository</strong> <strong>Of</strong> <strong>BInders to</strong> <strong>Nucleic acids (ROBIN)</strong> is a new experimentally-derived nucleic acid binding small molecule library. This chemical library was curated by small molecule microarray (SMM) screening of 36 nucleic acid targets against a library of 24,572 small molecules.The dataset posted here includes the following: SDF_files: This folder contains the SDF files of compounds used in machine learning models. Mordred_files: This folder contains CSV files of Mordred chemical descriptors derived from SDF files mentioned above. Please refer to (https://github.com/ky66/ROBIN) for more details on how this dataset is used in the paper.
DOI: 10.5281/zenodo.6941307
title: Demographic data along with questionnaires responses

description: Demographic data along with questionnaires responses
DOI: 10.5281/zenodo.6941317
title: Merluccius paradoxus decontaminated gx

description: .
DOI: 10.5281/zenodo.6941316
title: Merluccius paradoxus decontaminated gx

description: .
DOI: 10.5281/zenodo.6941315
title: Evaluating homophily of human PPI with respect to chromosomes

description: Homophily/heterophily evaluation, expressed in terms of z-score values, is related to the human Protein-Protein Interaction Network (PPI), obtained from the STRING v11.5 database (https://string-db.org) setting standard threshold on edge score (T=700). Each protein occurring in the PPI was assigned to a class corresponding to the chromosome the related gene belongs to. A total of 23 classes (<em>chr1</em>, <em>chr2</em>, ..., <em>chr22</em>, <em>chrX</em>) were considered (excluding the class corresponding to chromosome Y because of the small number of genes occurring in the network). The homophily/heterophily nature of the network, with respect to chromosome classes, was evaluated through HONTO tool (https://github.com/cumbof/honto). In other words, the tendency of proteins to preferentially interact with proteins whose genes are physically located on the same chromosome (homophily) or on different chromosomes (heterophily) was investigated and evaluated in terms of z-scores. Values related to intra (along the diagonal) and inter chromosomal interactions (other than the diagonal) are also reported as a heatmap. As one can observe, values occurring in the diagonal are clearly higher than values out of the diagonal, leading to assess a homophilic nature of the network, confirming the link between shared chromosome and interaction in the PPI.
DOI: 10.5281/zenodo.6941314
title: Evaluating homophily of human PPI with respect to chromosomes

description: Homophily/heterophily evaluation, expressed in terms of z-score values, is related to the human Protein-Protein Interaction Network (PPI), obtained from the STRING v11.5 database (https://string-db.org) setting standard threshold on edge score (T=700). Each protein occurring in the PPI was assigned to a class corresponding to the chromosome the related gene belongs to. A total of 23 classes (<em>chr1</em>, <em>chr2</em>, ..., <em>chr22</em>, <em>chrX</em>) were considered (excluding the class corresponding to chromosome Y because of the small number of genes occurring in the network). The homophily/heterophily nature of the network, with respect to chromosome classes, was evaluated through HONTO tool (https://github.com/cumbof/honto). In other words, the tendency of proteins to preferentially interact with proteins whose genes are physically located on the same chromosome (homophily) or on different chromosomes (heterophily) was investigated and evaluated in terms of z-scores. Values related to intra (along the diagonal) and inter chromosomal interactions (other than the diagonal) are also reported as a heatmap. As one can observe, values occurring in the diagonal are clearly higher than values out of the diagonal, leading to assess a homophilic nature of the network, confirming the link between shared chromosome and interaction in the PPI.
DOI: 10.5281/zenodo.6941321
title: Nisaetus nipalensis decontaminated gx

description: .
DOI: 10.5281/zenodo.6941320
title: Nisaetus nipalensis decontaminated gx

description: .
DOI: 10.5281/zenodo.6941300
title: MoMA Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.6468947
title: Adapting the Harmonized Data Quality Framework for Ontology Quality Assessment

description: Ontologies play an important role in the representation, standardization, and integration of biomedical data, but are known to have data quality (DQ) issues. We aimed to understand if the Harmonized Data Quality Framework (HDQF), developed to standardize electronic health record DQ assessment strategies, could be used to improve ontology quality assessment. A novel set of 14 ontology checks was developed. These DQ checks were aligned to the HDQF and examined by HDQF developers. The ontology checks were evaluated using 11 Open Biomedical Ontology Foundry ontologies. 85.7% of the ontology checks were successfully aligned to at least 1 HDQF category. Accommodating the unmapped DQ checks (n=2), required modifying an original HDQF category and adding a new Data Dependency category. While all of the ontology checks were mapped to an HDQF category, not all HDQF categories were represented by an ontology check presenting opportunities to strategically develop new ontology checks. The HDQF is a valuable resource and this work demonstrates its ability to categorize ontology quality assessment strategies.
DOI: 10.5281/zenodo.6941299
title: MoMA Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.6365936
title: [Supplementary material] Online Testing of RESTful APIs: Promises and Challenges

description: This is the supplementary material of the paper entitled <em>Online Testing of RESTful APIs: Promises and Challenges</em>. <strong>NOTE: An online easier-to-navigate version of this supplementary material is available at https://anonymous.4open.science/r/fse2022-supplementary-material-1172.</strong>
DOI: 10.6073/pasta/6ba30f4ebb63175a4399c5d0aa6a8698
title: Multispectral absorbance and fluorescence analysis of dissolved organic carbon in water samples taken from the Upper Clark Fork River (Montana, USA) during water years 2017 and 2018 (1 Oct 2016 - 30 Sep 2018)

description: These data were collected to support monitoring of the Upper Clark Fork River (UCFR) restoration. The long term UCFR monitoring project consists of monthly or bi-weekly water quality monitoring across a 200-km restoration gradient contaminated by historic mining practices to monitor inorganic phosphorus and nitrogen concentrations, biotic standing stocks, and heavy metal contamination. The original analytical intent for these data was to assess the response of river dissolved organic carbon to the floodplain restoration. Data are multispectral absorbance and fluorescence analyses of organic carbon dissolved in samples of well-mixed river thalweg water. Data include excitation-emission matrices, absorbance spectroscopy, as well as absorbance and fluorometric summary indices calculated at specific wavelengths of excitation and emission. Data are from the 2017 and 2018 water years (1 Oct 2016 to 30 Sep 2018). Data were collected on the Upper Clark Fork River (USGS HUC 17010201) at project sites distributed along the river from the vicinity of Anaconda to Missoula, Montana, USA.
DOI: 10.5281/zenodo.6941377
title: Data collected by community scientists reveal the role of climate and phylogeny on the frequency of shelter types used by frogs across the Americas

description: <strong>Supplementary Material </strong> of the manuscript on frog shelters across americas. Raw data and figures. <strong>Table S1.</strong> The number of all anuran observations per species per country in the iNaturalist dataset on July 1, 2021. <strong>Table S2.</strong> Distribution of shelter types among frog species retrieved from the iNaturalist platform across the Americas. Species with shelter first time reports are marked with *, shelter types are: AH = Holes in an artificial material; AS = Artificial surface; HG = Hole in the ground; HR = Among rocks; VBa = Hollow in bamboo; VBr = Bromelias or bromelia-like plants; VL = Live vegetation; VT = Tree trunk; VD = Leaf litter; WA = Water <strong>Table S3.</strong> Anuran shelter sites around the world based on our literature review. *indicates the reference is secondary literature
DOI: 10.5517/ccdc.csd.cc25ttqk
title: CCDC 2020819: Experimental Crystal Structure Determination

description: Related Article: Yuxiao Duan, Guowei Zhang, Xinyue Liu, Fenghui Shi, Tingting Wang, Hongchen Yan, Hu Xu, Lei Zhang|2022|J.Org.Chem.|87|8841|doi:10.1021/acs.joc.1c02693
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25ttrl
title: CCDC 2020820: Experimental Crystal Structure Determination

description: Related Article: Yuxiao Duan, Guowei Zhang, Xinyue Liu, Fenghui Shi, Tingting Wang, Hongchen Yan, Hu Xu, Lei Zhang|2022|J.Org.Chem.|87|8841|doi:10.1021/acs.joc.1c02693
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28y2nz
title: CCDC 2113321: Experimental Crystal Structure Determination

description: Related Article: Chad N. Ungarean, Petra Galer, Yu Zhang, Ken S. Lee, Justin M. Ngai, Sungjong Lee, Peng Liu, David Sarlah |2022|Nat. Synth.|1|542|doi:10.1038/s44160-022-00080-x
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc294r7g
title: CCDC 2119725: Experimental Crystal Structure Determination

description: Related Article: Shengting Xu, Zechun Cai, Chuyi Liao, Jianyi Shi, Tingting Wen, Feng Xie, Zhongzhi Zhu, Xiuwen Chen|2022|Org.Lett.|24|5209|doi:10.1021/acs.orglett.2c02057
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b704r
title: CCDC 2151683: Experimental Crystal Structure Determination

description: Related Article: Dong Lu, Shuangshuang Li, Xiaogang Yang, Shuang-Feng Yin, Nobuaki Kambe, Renhua Qiu|2022|Org.Lett.|24|5197|doi:10.1021/acs.orglett.2c02027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bcnx9
title: CCDC 2156171: Experimental Crystal Structure Determination

description: Related Article: Geeta Yadav, Sunil Kumar, Ramesh Kataria, Devinder Kumar|2022|Synth.Commun.|52|1412|doi:10.1080/00397911.2022.2093648
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bhhv6
title: CCDC 2159858: Experimental Crystal Structure Determination

description: Related Article: Diksha Rajput, Atul Kumar, Tanvi Jandial, Muthu Karuppasamy, Nattamai Bhuvanesh, Raju Suresh Kumar, Abdulrahman I. Almansour, Vellaisamy Sridharan|2022|J.Org.Chem.|87|8956|doi:10.1021/acs.joc.2c00671
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bhhw7
title: CCDC 2159859: Experimental Crystal Structure Determination

description: Related Article: Diksha Rajput, Atul Kumar, Tanvi Jandial, Muthu Karuppasamy, Nattamai Bhuvanesh, Raju Suresh Kumar, Abdulrahman I. Almansour, Vellaisamy Sridharan|2022|J.Org.Chem.|87|8956|doi:10.1021/acs.joc.2c00671
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bhhx8
title: CCDC 2159860: Experimental Crystal Structure Determination

description: Related Article: Diksha Rajput, Atul Kumar, Tanvi Jandial, Muthu Karuppasamy, Nattamai Bhuvanesh, Raju Suresh Kumar, Abdulrahman I. Almansour, Vellaisamy Sridharan|2022|J.Org.Chem.|87|8956|doi:10.1021/acs.joc.2c00671
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bjz95
title: CCDC 2161267: Experimental Crystal Structure Determination

description: Related Article: Mingyuan Lei, Fayuan Ge, Hegen Zheng|2022|Inorg.Chem.|61|11243|doi:10.1021/acs.inorgchem.2c01313
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.