cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1028082
title: Fx1568 Npr-10(Tm1568)X | 2010-01-25T14:23:46+00:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=m5NkgIhGiaU
<b>strain</b> : FX1568
<b>timestamp</b> : 2010-01-25T14:23:46+00:00
<b>gene</b> : npr-10
<b>chromosome</b> : X
<b>allele</b> : tm1568
<b>strain_description</b> : npr-10(tm1568)X
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : npr-10 (tm1568) on food R_2010_01_25__14_23_46___4___6
<b>total time (s)</b> : 900.011
<b>frames per second</b> : 26.3852
<b>video micrometers per pixel</b> : 4.59557
<b>number of segmented skeletons</b> : 21289
DOI: 10.5281/zenodo.1028125
title: Vc2324 Flp-6(Ok3056)V | 2010-01-14T11:37:26+00:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=k51kVUsKk3I
<b>strain</b> : VC2324
<b>timestamp</b> : 2010-01-14T11:37:26+00:00
<b>gene</b> : flp-6
<b>chromosome</b> : V
<b>allele</b> : ok3056
<b>strain_description</b> : flp-6(ok3056)V
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : clockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : flp-6 (ok3056)V on food L_2010_01_14__11_37_26__4
<b>total time (s)</b> : 899.35
<b>frames per second</b> : 20.0
<b>video micrometers per pixel</b> : 4.78447
<b>number of segmented skeletons</b> : 17765
DOI: 10.5281/zenodo.1028126
title: Vc2324 Flp-6(Ok3056)V | 2010-01-14T11:37:26+00:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=k51kVUsKk3I
<b>strain</b> : VC2324
<b>timestamp</b> : 2010-01-14T11:37:26+00:00
<b>gene</b> : flp-6
<b>chromosome</b> : V
<b>allele</b> : ok3056
<b>strain_description</b> : flp-6(ok3056)V
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : clockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : flp-6 (ok3056)V on food L_2010_01_14__11_37_26__4
<b>total time (s)</b> : 899.35
<b>frames per second</b> : 20.0
<b>video micrometers per pixel</b> : 4.78447
<b>number of segmented skeletons</b> : 17765
DOI: 10.5281/zenodo.1028786
title: N2 Schafer Lab N2 (Bristol, Uk) | 2010-01-25T11:33:00+00:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=StHvHV3esTs
<b>strain</b> : N2
<b>timestamp</b> : 2010-01-25T11:33:00+00:00
<b>gene</b> : -N/A-
<b>chromosome</b> : -N/A-
<b>allele</b> : -N/A-
<b>strain_description</b> : Schafer Lab N2 (Bristol, UK)
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : clockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : N2 on food L_2010_01_25__11_33_00___4___1
<b>total time (s)</b> : 899.215
<b>frames per second</b> : 26.3852
<b>video micrometers per pixel</b> : 4.59557
<b>number of segmented skeletons</b> : 21364
DOI: 10.5281/zenodo.1028787
title: N2 Schafer Lab N2 (Bristol, Uk) | 2010-01-25T11:33:00+00:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=StHvHV3esTs
<b>strain</b> : N2
<b>timestamp</b> : 2010-01-25T11:33:00+00:00
<b>gene</b> : -N/A-
<b>chromosome</b> : -N/A-
<b>allele</b> : -N/A-
<b>strain_description</b> : Schafer Lab N2 (Bristol, UK)
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : clockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : N2 on food L_2010_01_25__11_33_00___4___1
<b>total time (s)</b> : 899.215
<b>frames per second</b> : 26.3852
<b>video micrometers per pixel</b> : 4.59557
<b>number of segmented skeletons</b> : 21364
DOI: 10.5281/zenodo.1030157
title: Sp1789 Unc-115(Mn481)X | 2010-09-24T12:16:30+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=kzxNLRqOstY
<b>strain</b> : SP1789
<b>timestamp</b> : 2010-09-24T12:16:30+01:00
<b>gene</b> : unc-115
<b>chromosome</b> : X
<b>allele</b> : mn481
<b>strain_description</b> : unc-115(mn481)X
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : clockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : unc-115 (mn481)X on food L_2010_09_24__12_16_30___4___4
<b>total time (s)</b> : 899.0
<b>frames per second</b> : 30.03
<b>video micrometers per pixel</b> : 4.56331
<b>number of segmented skeletons</b> : 14211
DOI: 10.5281/zenodo.1030250
title: Mt1231 Egl-23(N601)Iv | 2010-07-15T15:15:46+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=MzMoeX49XTo
<b>strain</b> : MT1231
<b>timestamp</b> : 2010-07-15T15:15:46+01:00
<b>gene</b> : egl-23
<b>chromosome</b> : IV
<b>allele</b> : n601
<b>strain_description</b> : egl-23(n601)IV
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : clockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : egl-23 (n601)IV on food L_2010_07_15__15_15_46___4___11
<b>total time (s)</b> : 899.574
<b>frames per second</b> : 25.5754
<b>video micrometers per pixel</b> : 4.59377
<b>number of segmented skeletons</b> : 19508
DOI: 10.5281/zenodo.1030251
title: Mt1231 Egl-23(N601)Iv | 2010-07-15T15:15:46+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=MzMoeX49XTo
<b>strain</b> : MT1231
<b>timestamp</b> : 2010-07-15T15:15:46+01:00
<b>gene</b> : egl-23
<b>chromosome</b> : IV
<b>allele</b> : n601
<b>strain_description</b> : egl-23(n601)IV
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : clockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : egl-23 (n601)IV on food L_2010_07_15__15_15_46___4___11
<b>total time (s)</b> : 899.574
<b>frames per second</b> : 25.5754
<b>video micrometers per pixel</b> : 4.59377
<b>number of segmented skeletons</b> : 19508
DOI: 10.5281/zenodo.1030618
title: Rw85 Unc-89(St85)I | 2010-04-15T11:11:33+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=2Dg7-1DsJ0o
<b>strain</b> : RW85
<b>timestamp</b> : 2010-04-15T11:11:33+01:00
<b>gene</b> : unc-98
<b>chromosome</b> : I
<b>allele</b> : st85
<b>strain_description</b> : unc-89(st85)I
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : unc-98 (st85)I on food R_2010_04_15__11_11_33__4
<b>total time (s)</b> : 899.875
<b>frames per second</b> : 31.9489
<b>video micrometers per pixel</b> : 4.3011
<b>number of segmented skeletons</b> : 19385
DOI: 10.5281/zenodo.1033063
title: Da609 Npr-1(Ad609)X | 2010-01-25T16:09:28+00:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=j5ZM6I5M8A8
<b>strain</b> : DA609
<b>timestamp</b> : 2010-01-25T16:09:28+00:00
<b>gene</b> : npr-1
<b>chromosome</b> : X
<b>allele</b> : ad609
<b>strain_description</b> : npr-1(ad609)X
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : npr-1 (ad609)X on food R_2010_01_25__16_09_28___4___12
<b>total time (s)</b> : 132.958
<b>frames per second</b> : 27.1739
<b>video micrometers per pixel</b> : 4.59557
<b>number of segmented skeletons</b> : 2304
DOI: 10.6084/m9.figshare.7580036
title: Data for rotational tillage

description: Data for manuscript entitled " <i>Rotational tillage: a sustainable management for wheat production in
semiarid Loess Plateau </i>".
DOI: 10.6084/m9.figshare.12806035
title: Additional file 11 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 11: Table S4. Detailed information of DEPs by paired comparisons among W, P, and T in males and females.
DOI: 10.6084/m9.figshare.12806032.v1
title: Additional file 10 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 10: Table S3. Bioinformatic elaboration for functional GO term and KEGG pathway enrichment via DAVID analysis.
DOI: 10.6084/m9.figshare.23822269
title: The complete chloroplast genome of <i>Aster altaicus</i> Willd. (Asteraceae: <i>Aster</i>) and phylogenetic analysis

description: <i>Aster altaicus</i> Willd. is an important medicinal plant and can also be used as a forage grass. To better understand the diversity and phylogeny between <i>A. altaicus</i> and other <i>Aster</i> species, we sequenced and annotated the complete chloroplast genome of <i>A. altaicus</i> by using the Illumina Hiseq 2500 platform. This complete chloroplast genome is 152,473 bp long and the GC content is 37.3% presented a negative AT-skew (–0.002) and a positive GC-skew (0.003). The genome contains a large single-copy region (LSC) of 84,235 bp, a small single-copy region (SSC) of 18,212 bp, which separated by a pair of inverted repeat regions (IRA and IRB) of 25,013 bp. Moreover, 129 genes were found in the chloroplast of <i>A. altaicus</i>, including 85 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs), 8 ribosomal RNA unit genes (rRNAs). Phylogenetic analysis showed that <i>A. altaicus</i> was more closely related to <i>A. altaicus</i> and <i>A. altaicus</i> var. uchiyamae. This study lays the foundation for further studies on the evolution and phylogeny of <i>Aster</i>.
DOI: 10.6084/m9.figshare.23822269.v1
title: The complete chloroplast genome of <i>Aster altaicus</i> Willd. (Asteraceae: <i>Aster</i>) and phylogenetic analysis

description: <i>Aster altaicus</i> Willd. is an important medicinal plant and can also be used as a forage grass. To better understand the diversity and phylogeny between <i>A. altaicus</i> and other <i>Aster</i> species, we sequenced and annotated the complete chloroplast genome of <i>A. altaicus</i> by using the Illumina Hiseq 2500 platform. This complete chloroplast genome is 152,473 bp long and the GC content is 37.3% presented a negative AT-skew (–0.002) and a positive GC-skew (0.003). The genome contains a large single-copy region (LSC) of 84,235 bp, a small single-copy region (SSC) of 18,212 bp, which separated by a pair of inverted repeat regions (IRA and IRB) of 25,013 bp. Moreover, 129 genes were found in the chloroplast of <i>A. altaicus</i>, including 85 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs), 8 ribosomal RNA unit genes (rRNAs). Phylogenetic analysis showed that <i>A. altaicus</i> was more closely related to <i>A. altaicus</i> and <i>A. altaicus</i> var. uchiyamae. This study lays the foundation for further studies on the evolution and phylogeny of <i>Aster</i>.
DOI: 10.6084/m9.figshare.5483296.v1
title: Petrogenesis and metallogenic implications of Late Mesozoic intrusive rocks in the Tongling region, eastern China: a case study and perspective review

description: Large-scale Cu–Au mineralization is associated with Late Mesozoic intrusive rocks in the Tongling region of eastern China, which mainly comprise pyroxene monzodiorite, quartz monzodiorite, and granodiorite. To constrain the petrogenesis of the intrusive rocks and Cu–Au mineralization, detailed analyses of the geochronology, apatite <i>in situ</i> geochemistry, whole-rock geochemistry, and zircon Hf isotopic compositions were performed. Magmatic zircons from pyroxene monzodiorites, quartz monzodiorites, and granodiorites yield U–Pb ages of 136–149 Ma, 136–146 Ma, and 138–152 Ma, respectively, indicating that their formation ages are contemporaneous. Quartz monzodiorites and granodiorites (SiO<sub>2</sub> = 57.9–69.5 wt.%) are highly potassic calc-alkaline rocks with adakitic affinity and have low MgO and Y contents, low zircon ε<sub>Hf</sub>(<i>t</i>) values (−11.7 to −39.0), high apatite Cl contents (&gt;0.2 wt.%), and log fO<sub>2</sub> values (−23.2 to −8.23), indicating that they may have formed when metasomatized mantle-derived magmas mixed with slab-derived magmas before undergoing crustal assimilation and fractional crystallization. Pyroxene monzodiorites (SiO<sub>2</sub> = 48.4–53.0 wt.%) are shoshonitic and record high MgO, P<sub>2</sub>O<sub>5</sub>, and Y contents, high zircon ε<sub>Hf</sub>(<i>t</i>) values (1.55 to −7.87), high oxygen fugacity, low Nb and Ta contents, and low apatite Cl contents (mainly &lt;0.2 wt.%), suggesting that they were primarily derived from a metasomatized lithospheric mantle-derived magma that experienced the assimilation of lower crustal materials. The results indicate that the intrusive rocks and associated large-scale Cu–Au mineralization of the Tongling region resulted from the partial melting of the subducted oceanic slab in an oxidizing environment.
DOI: 10.6084/m9.figshare.7056161
title: A Sustainable Collaboratory for Coastal Resilience Research

description: Our goal is to create a cloud-ready repository of
open-source coastal modeling tools which enable scientists and
engineers to use high performance computers to study a variety
of physical and ecological processes. The system we are building
leverages Jupyter notebooks, Docker, Singularity, and the Agave
Platform to create a platform for running jobs and analyzing data
in a way that is (1) intuitive, (2) repeatable, (3) and collaborative.

 The paper describes the methodology to integrate the four
technologies into the system that serves the coastal resilience
research collaboratory. Two commonly used open-source numer-
ical models are used to demonstrate the utility of the system.
Simulation results of ocean waves generated by Hurricane Issac
(2012) and coastal wave evolution are presented as an illustration.
The sustainability of the collaboratory is discussed in detail.
DOI: 10.6084/m9.figshare.22767461
title: Additional file 7 of Transcriptomic profiling of near-isogenic lines reveals candidate genes for a significant locus conferring metribuzin resistance in wheat

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.21201075
title: Comparative transcriptome analysis of different tissues of Rheum tanguticum Maxim. ex Balf. (Polygonaceae) reveals putative genes involved in anthraquinone biosynthesis

description: Abstract Rheum tanguticum is a perennial herb and an important medicinal plant, with anthraquinones as its main bioactive compounds. However, the specific pathway of anthraquinone biosynthesis in rhubarb is still unclear. The accumulation of anthraquinones in different tissues (root, leaf, stem and seed) of R. tanguticum revealed considerable variation, suggesting possible differences in metabolite biosynthetic pathways and accumulation among various tissues. To better illustrate the biosynthetic pathway of anthraquinones, we assembled transcriptome sequences from the root, leaf, stem and seed tissues yielding 157,564 transcripts and 88,142 unigenes. Putative functions could be assigned to 56,911 unigenes (64.57%) based on BLAST searches against annotation databases, including GO, KEGG, Swiss-Prot, NR, and Pfam. In addition, putative genes involved in the biosynthetic pathway of anthraquinone were identified. The expression profiles of nine unigenes involved in anthraquinone biosynthesis were verified in different tissues of R. tanguticum by qRT-PCR. Various transcription factors, including bHLH, MYB_related, and C2H2, were identified by searching unigenes against plantTFDB. This is the first transcriptome analysis of different tissues of R. tanguticum and can be utilized to describe the genes involved in the biosynthetic pathway of anthraquiones, understanding the molecular mechanism of active compounds in R. tanguticum.
DOI: 10.6084/m9.figshare.12812488.v1
title: Additional file 2 of Long noncoding RNA ZFPM2-AS1 acts as a miRNA sponge and promotes cell invasion through regulation of miR-139/GDF10 in hepatocellular carcinoma

description: Additional file 2.