cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.lagobi
title: Occurrence Download

description: A dataset containing 91135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Month is greater than or equal to January",
 "Country is Canada",
 "TaxonKey is Strigiformes"
 ]
}

 The dataset includes 91135 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014650-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kw5wto
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gerbillus tarabuli Thomas, 1902",
 "Country is Tunisia"
 ]
}

 The dataset includes 66 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015229-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7j5eyc
title: Occurrence Download

description: A dataset containing 758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus halepensis Mill.",
 "Geometry POLYGON((-0.54 38.46,-0.54 38.89,0.32 38.89,0.32 38.46,-0.54 38.46))",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation"
 ]
 }
 ]
}

 The dataset includes 758 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015101-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.luyfoq
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Picus viridis Linnaeus, 1758",
 "Country is Slovenia",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014939-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmyhry
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoeurycea boneti Alvarez & Martín, 1967"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015659-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ym3qed
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Month is greater than or equal to November",
 "Country is United States of America",
 "TaxonKey is Cuculiformes"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015655-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5rbrf
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salsola montana Litv."
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015485-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sck4hg
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudopleuronectes herzensteini (Jordan & Snyder, 1901)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 130 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016683-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17031/668bd7ee45fef
title: CPR Data request - Elisha Hayward - University College London - 05/07/2024

description: All CPR samples.
From January 1958 to December 2021. 
From 47 to 52 North, and 50 to 45 West.
All taxa in 4 taxonomic groups: 1 - large copepods (35), 2 - small copepods (22), 3 - diatoms (52), 4 - dinoflagellates (35) 
Coccolithaceae (CPR ID = 195)
Silicoflagellates (CPR ID = 198).
DOI: 10.15468/dl.5atin3
title: Occurrence Download

description: A dataset containing 26707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thelypteridaceae",
 "Geometry POLYGON((-102.65625 7.013667,-108.984375 15.961329,-103.359374 25.165173,-92.109374 28.304380,-80.15625 28.921631,-71.015625 25.799891,-63.984375 22.593726,-55.546874 15.961329,-45.703125 9.102096,-35.859375 -0.703107,-30.234375 -7.013667,-33.046875 -18.646245,-37.96875 -28.304380,-45.703125 -37.160316,-52.734375 -42.032974,-51.328125 -50.736455,-54.84375 -55.776573,-63.984375 -58.447732,-73.125 -58.813741,-79.453125 -55.379110,-83.671875 -47.517200,-79.453125 -35.460669,-80.15625 -24.527134,-85.78125 -15.961329,-97.03125 -5.615985,-99.843749 -1.406108,-99.843749 -1.406108,-102.65625 7.013667))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26707 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015369-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqmzxc
title: Occurrence Download

description: A dataset containing 1129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Tropicos MO Specimen Data",
 {
 "or" : [
 "TaxonKey is Mosannona depressa (Baill.) Chatrou",
 "TaxonKey is Mortoniodendron vestitum Lundell",
 "TaxonKey is Myoxanthus octomerioides (Lindl.) Luer",
 "TaxonKey is Myriocarpa heterospicata Sm.",
 "TaxonKey is Myrmecophila christinae Carnevali & Gómez-Juárez",
 "TaxonKey is Myrsine cubana A.DC.",
 "TaxonKey is Nectandra belizensis (Lundell) C.K.Allen",
 "TaxonKey is Nectandra longicaudata (Lundell) C.K.Allen",
 "TaxonKey is Nectandra lundellii C.K.Allen",
 "TaxonKey is Neea acuminatissima Standl.",
 "TaxonKey is Neomillspaughia emarginata (H.Gross) S.F.Blake",
 "TaxonKey is Neomillspaughia paniculata (Donn.Sm.) S.F.Blake",
 "TaxonKey is Ocotea bourgeauviana (Mez) van der Werff",
 "TaxonKey is Ocotea effusa (Meisn.) Hemsl.",
 "TaxonKey is Ocotea rubriflora Mez",
 "TaxonKey is Odontonema albiflorum Leonard",
 "TaxonKey is Odontonema glabrum Brandegee",
 "TaxonKey is Odontonema hondurense (Lindau) D.N.Gibson",
 "TaxonKey is Odontosoria schlechtendalii (C.Presl) C.Chr.",
 "TaxonKey is Oncidium subcruciforme (A.H.Heller) Garay & Stacy",
 "TaxonKey is Oreopanax geminatus Marchal",
 "TaxonKey is Oreopanax sanderianus Hemsl.",
 "TaxonKey is Otopappus guatemalensis (Urb.) R.L.Hartm. & Stuessy",
 "TaxonKey is Otopappus scaber S.F.Blake",
 "TaxonKey is Ottoschulzia pallida Lundell",
 "TaxonKey is Ouratea insulae L.Riley",
 "TaxonKey is Ouratea pyramidalis L.Riley",
 "TaxonKey is Oxyrhynchus trinervius (Donn.Sm.) Rudd"
 ]
 }
 ]
}

 The dataset includes 1129 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016128-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1v2zbt
title: Occurrence Download

description: A dataset containing 22452 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eleocharis uniglumis (Link) Schult."
 ]
}

 The dataset includes 22452 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016117-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evu79f
title: Occurrence Download

description: A dataset containing 1077 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemitriccus orbitatus (Wied-Neuwied, 1831)"
 ]
}

 The dataset includes 1077 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016105-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgdrhj
title: Occurrence Download

description: A dataset containing 2474 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Citrus ×limon (L.) Burm.fil."
 ]
}

 The dataset includes 2474 records from 214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015972-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pldble
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bos gaurus C.H.Smith, 1827"
 ]
}

 The dataset includes 72 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015972-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1zptrs
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lasiurus cinereus (Palisot de Beauvois, 1796)",
 "Country is Mexico",
 "Geometry POLYGON((-106.062011 23.130257,-106.062011 20.540221,-103.798828 20.540221,-103.798828 23.130257,-106.062011 23.130257))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015925-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjnu6v
title: Occurrence Download

description: A dataset containing 702 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Cyathea dichromatolepis (Fée) Domin, Alsophila dichromatolepis Fée, Alsophila aperta Fée, Cyathea aperta (Fée) Domin, Alsophila arbuscula C.Presl, Cyathea arbuscula (C.Presl) Domin, Trichipteris arbuscula (C.Presl) R.M.Tryon, Alsophila ceropteris Fée, Alsophila guimariensis Fée, Cyathea guimariensis (Fée) Domin, Alsophila pallida Rosenst., Cyathea pallida (Rosenst.) Domin, Cyathea mesocarpa (C.Chr.) Domin, Alsophila mesocarpa (Domin) C.Chr.)"
 ]
}

 The dataset includes 702 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016684-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oeykgv
title: Occurrence Download

description: A dataset containing 2075 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "DatasetKey is Fauna y flora asociada a 18 humedales del valle geográfico del río Cauca"
 ]
}

 The dataset includes 2075 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015783-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ozvmw
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bauhinia viridescens var. hirsuta K.Larsen & S.S.Larsen"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016821-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tuqvz
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ateles belzebuth É.Geoffroy Saint-Hilaire, 1806"
 ]
}

 The dataset includes 289 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016779-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykragk
title: Occurrence Download

description: A dataset containing 29886 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-38.243408 -9.318990,-37.825927 -8.787368,-37.210693 -9.037002,-37.078857 -9.199715,-36.870117 -9.264779,-36.650390 -9.286464,-36.397705 -9.134639,-36.221923 -8.950192,-35.991210 -8.841651,-35.782470 -8.798225,-35.551757 -8.765652,-35.375976 -8.765652,-35.288085 -8.895925,-35.332031 -9.037002,-35.277099 -9.134639,-35.321044 -9.318990,-35.573730 -9.568251,-36.375732 -10.541821,-37.639160 -9.730714,-38.166503 -9.481572,-38.243408 -9.318990))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 29886 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016268-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mfpzwx
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinguicula L.",
 "Geometry POLYGON((-78.07 2.15,-78.07 6.52,-71.19 6.52,-71.19 2.15,-78.07 2.15))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016172-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cf5xje
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xylopia parviflora (A.Rich.) Benth.",
 "Country is Benin"
 ]
}

 The dataset includes 60 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017461-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.snetz4
title: Occurrence Download

description: A dataset containing 81172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Larus marinus Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is October"
 ]
}

 The dataset includes 81172 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017427-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ds2rph
title: Occurrence Download

description: A dataset containing 1911 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Limonium subglabrum Erben",
 "TaxonKey is Limonium tuberculatum (Boiss.) Kuntze",
 "TaxonKey is Limonium viciosoi (Pau) Erben",
 "TaxonKey is Limonium stenophyllum Erben",
 "TaxonKey is Limonium ruizii (Font Quer) Fern.Casas",
 "TaxonKey is Limonium ovalifolium (Poir.) Kuntze",
 "TaxonKey is Limonium fontqueri (Pau) L.Llorens",
 "TaxonKey is Limonium bellidifolium (Gouan) Dumort.",
 "TaxonKey is Limonium densissimum (Pignatti) Pignatti",
 "TaxonKey is Limonium thiniense Erben",
 "TaxonKey is Limonium longibracteatum Erben",
 "TaxonKey is Limonium tabernense Erben",
 "TaxonKey is Limonium interjectum J.X.Soler & Rosselló",
 "TaxonKey is Limonium rigualii M.B.Crespo & Erben",
 "TaxonKey is Limonium santapolense Erben",
 "TaxonKey is Limonium emarginatum (Willd.) Kuntze",
 "TaxonKey is Limonium ×coincyi Sennen",
 "TaxonKey is Limonium dodartii subsp. lusitanicum (Daveau) Franco",
 "TaxonKey is Limonium insulare (Bég. & Landi) Arrigoni & Diana",
 "TaxonKey is Limonium lanceolatum (Hoffmanns. & Link) Franco",
 "TaxonKey is Limonium multiflorum Erben",
 "TaxonKey is Limonium pseudolaetum Arrigoni & Diana",
 "TaxonKey is Limonium strictissimum (Salzm.) Arrigoni",
 "TaxonKey is Limonium alicunense Gómíz",
 "TaxonKey is Limonium camposanum Erben"
 ]
 }
 ]
}

 The dataset includes 1911 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017210-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vsgitk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dianema repens G.Lister & Cran, 1925"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059843-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.goia2q
title: Occurrence Download

description: A dataset containing 3686 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vireo hypochryseus P.L.Sclater, 1863",
 "Country is Mexico"
 ]
}

 The dataset includes 3686 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017136-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkikam
title: Occurrence Download

description: A dataset containing 644 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Santalum album L."
 ]
}

 The dataset includes 644 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018275-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdpltt
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polylepis incana Kunth"
 ]
}

 The dataset includes 327 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018087-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gt2xke
title: Occurrence Download

description: A dataset containing 319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudopleuronectes yokohamae (Günther, 1877)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 319 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016685-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ud16fa
title: Occurrence Download

description: A dataset containing 2428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyclothone acclinidens Garman, 1899",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2428 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018077-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apgpr9
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arremon franciscanus M.Raposo, 1997",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018829-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zaykin
title: Occurrence Download

description: A dataset containing 79173 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Egypt",
 "Geometry POLYGON((16.39 21.08,16.39 36.45,44.08 36.45,44.08 21.08,16.39 21.08))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 79173 records from 293 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018775-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pyks2j
title: Occurrence Download

description: A dataset containing 751 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles atroparvus Thiel, 1927"
 ]
}

 The dataset includes 751 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002034-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15227651
title: Relate example for quantifying positive selection

description: This repository contains a fully contained example of running Relate on CEU samples of the 1000 Genomes Project dataset. We include data a few Mb around the LCT gene and construct Relate trees and subsequently compute selection p-values using the module RelateSelection. 

The output is a p-value for every SNP in the dataset. These p-values are computed by first extracting the number of lineages remaining in the tree when the mutation was carried by two lineages. We then compute the probability of a mutation spreading to at least its present-day observed frequency. The p-value therefore quantifies to what extend the mutation has outcompeted other lineages in the tree. We can also condition on other time points in the tree, such as when around half the lineages remaining carry the focal mutation.

Running the scripts

Please download Relate binaries from https://myersgroup.github.io/relate/ and then run the script run.sh included in this repository.