cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7zapvk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is "
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032875-251025141854904/datasets/export for details.
DOI: 10.5281/zenodo.17608108
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS251114k Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS251114k Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.17608109
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS251114k Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS251114k Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.15468/dl.epfvfq
title: Occurrence Download

description: A dataset containing 4400 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((44.69773 1.65275, 45.83123 1.65275, 45.83123 2.308565, 44.69773 2.308565, 44.69773 1.65275))"
 ]
}

 The dataset includes 4400 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013807-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xr84y2
title: Occurrence Download

description: A dataset containing 832 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago sativa",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 832 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024777-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.9cnp5hqdn
title: Low circulating levels of miR-451a in girls with Polycystic Ovary Syndrome: different effects of randomized treatments

description: Context: Polycystic ovary syndrome (PCOS) is a prevalent disorder
 in adolescent girls,  purportedly driven by
 hepato-visceral fat excess, and often followed by subfertility
 and type 2 diabetes.   Objective:we studied the baseline
 miRNA profile of girls with PCOS, and the effects of a randomized
 treatment with an oral contraceptive (OC) or
 with spironolactone-pioglitazone-metformin (SPIOMET, aiming at
 loss of hepato-visceral fat excess) for 1 year.  Design &
 Patients:The miRNA profile was assessed by RNA sequencingin girls
 with PCOS who had participated in a randomized, open-label, single-center,
 pilot study (n=31; age 15.7 years, BMI 23.1 Kg/m2). Healthy age- and
 BMI-matched girls (n=13) served as controls. Differentially
 expressedmiRNAs were validated by qRT-PCR in the entire study population.
 Post-treatment ovulation rates were assessed by salivary progesterone in
 PCOS girls. Setting:Endocrinology Department, University Hospital
 Results: Girls with PCOS -as compared to controls- had markedly
 reduced concentrations of circulating miR-451a, miR-652-3p,
 miR-106b-5p and miR-206; pathway enrichment analysis showed that
 these miRNAs target genes involved in energy homeostasis and cell-cycle
 control. In the present study, miR-451a could diagnose PCOS with 100%
 sensitivity and 100% specificity. SPIOMET (but not OC) was accompanied by
 on-treatment normalization of the miRNA profile in girls with PCOS;
 miR-451a concentrations after 1 year on OC or SPIOMET
 treatment associated closely (r=0.66; P&lt;0.0001) with
 post-treatment ovulation rates.  Conclusion:SPIOMET treatment for
 1 year normalizes the miRNA profile of girls with PCOS. Circulating
 miR-451a may become a biomarker to guide the diagnosis and treatment of
 PCOS in adolescence.
description: This is a first pilot, proof-of-concept study wherein the miRNA
 profile of adolescent girls with PCOS was compared to that of healthy
 control girls, and wherein the effects of a randomized intervention with
 two different medications (for 1 year) on the miRNA profile were
 compared.
DOI: 10.5061/dryad.3bk3j9kdz
title: Multiple chromosomal inversions contribute to adaptive divergence of a dune sunflower ecotype

description: Both models and case studies suggest that chromosomal inversions can
 facilitate adaptation and speciation in the presence of gene flow by
 suppressing recombination between locally adapted alleles. Until recently,
 however, it has been laborious and time-consuming to identify and genotype
 inversions in natural populations. Here we apply RAD sequencing data and
 newly developed population genomic approaches to identify putative
 inversions that differentiate a sand dune ecotype of the prairie sunflower
 (Helianthus petiolaris) from populations found on the adjacent sand sheet.
 We detected seven large genomic regions that exhibit a different
 population structure than the rest of the genome and that vary in
 frequency between dune and non-dune populations. These regions also show
 high linkage disequilibrium and high heterozygosity between, but not
 within arrangements, consistent with the behavior of large inversions, an
 inference subsequently validated in part by comparative genetic mapping.
 Genome-environment association analyses show that key environmental
 variables, including vegetation cover and soil nitrogen, are significantly
 associated with inversions. The inversions co-locate with previously
 described “islands of differentiation,” and appear to play an important
 role in adaptive divergence and incipient speciation within H. petiolaris.
description: N.full.st.table: non-dune family SNP set called on the HA412
 reference genome and filtered with Genome Analysis Tool Kit for linkage
 mapping D.full.st.table: dune family SNP set called on
 the HA412 reference genome and filtered with Genome Analysis Tool Kit for
 linkage mapping
DOI: 10.5061/dryad.mkkwh70vh
title: Disentangling drivers of small mammal diversity in a highly fragmented forest system

description: The Atlantic Forest is the second most diverse forest system in South
 America and only a fraction of its original distribution remains. In this
 study, we aim to use robust datasets of small mammals along the entire
 forest system to disentangle the main drivers for diversity along this
 gradient. More specifically we aim to disentangle if deforestation
 (recent), biogeographical variables, including 19 bioclimatic variables
 (historic), or historical trapping bias best describe patterns of
 taxonomic, functional, and phylogenetic diversities using small mammal
 assembles, from northeastern Brazil to eastern Paraguay.  For
 that, we applied regression tree analyses to determine what environmental
 variables best describe each of the dimensions of diversity. Additionally,
 we implemented polynomial regression to test non-linear relationships
 between biodiversity metrics and patch size. We found that patterns of
 overall taxonomic, functional and phylogenetic diversities; rodent
 taxonomic diversity; and marsupial functional diversity were better
 explained by temperature variables. Meanwhile, marsupial taxonomic and
 phylogenetic diversities; and rodent functional and phylogenetic
 diversities were best explained by precipitation variables. Furthermore,
 patch area, trapping, and latitude were never the best descriptors for any
 of the diversity dimensions. Although all dimensions of biodiversity are
 correlated, they have unique information and should be considered
 individually to better understand biodiversity and inform conservation
 strategies. We found that fragmentation is impactful at a local scale and
 becomes less important at a biogeographical scale. Therefore, climatic
 variables drove biogeographical faunal patterns for all clades, probably
 reflecting important historical assembly process at large spatial scales.
description:
DOI: 10.3886/e234606v2
title: Bet.Kop.

description: .
DOI: 10.5061/dryad.wpzgmsbgx
title: Population genetics informs the management of a controversial Australian waterbird

description: Widespread degradation across Australia’s inland wetland network has
 contributed to severe declines for many waterbird species. In contrast,
 breeding colonies of the Australian white ibis (Threskiornis molucca) have
 increased in urbanised areas along the coast, but the level of dispersal
 and gene flow between inland and coastal areas remain unknown. This study
 uses single nucleotide polymorphisms (SNPs) to ascertain the variables
 influencing genetic connectivity among several inland and urban colonies
 of white ibis across south-eastern Australia between 2015 and 2018. The
 contemporary effective population size was estimated, and this value was
 used in simulations to evaluate the impact of various management scenarios
 on future genetic diversity. We found no significant differences in allele
 frequencies between localities, or robust evidence of site fidelity,
 therefore suggesting widespread dispersal and gene flow between inland and
 urban colonies. Furthermore, effective sizes were large enough to maintain
 genetic diversity into the future under various realistic management
 scenarios. However, the lack of genetic partitioning found suggests that
 urban management of the ibis should not be undertaken in isolation of the
 conservation requirements of inland colonies.
description: The data were collected as part of a population genetics study
 investigating gene flow and effective population sizes of Australian white
 ibis (Threskiornis molucca) across south-east Australia. Feather samples
 were collected non-invasively from 11 wetlands and extracted DNA was
 sequenced via genotyping-by-sequencing methods employed by Diversity
 Arrays Technology, Canberra, Australia. Resulting single nucleotide
 polymorphisms (SNPs) were filtered for quality.
description: Please see the ReadMe file for additional details on the
 dataset.
DOI: 10.5061/dryad.wdbrv15jc
title: Flexible habitat choice by aphids exposed to multiple cues reflecting present and future benefits

description: Mothers choose suitable habitats for laying offspring to maximize fitness.
 Since habitat quality varies in space and time, mothers gather information
 to choose among available habitats through multiple cues reflecting
 different aspects of habitat quality at present and in the future.
 However, it is unclear how females assess and integrate different cues
 associated with current rewards and future safety to optimize
 oviposition/larviposition decisions, especially across small spatial
 scales. Here we tested the individual and interactive effects of leaf
 surface, leaf orientation and leaf bending direction on larviposition site
 choice and fitness benefits of wheat aphids (Metopolophium dirhodum)
 within individual leaves. We found that females preferred upper over lower
 surfaces for gaining current food-related rewards, downward- over
 upward-facing surfaces for avoiding potential abiotic risks, and sunken
 over protruding surfaces for avoiding potential biotic risks. When facing
 conflicting cues during larviposition, females preferred
 downward-facing/sunken surfaces over upper surfaces, suggesting that
 females prioritize potential safety at the cost of current rewards during
 decision making. Most importantly, our combined-cue experiments showed
 females still assessed secondary cues (i.e. the upper surface) when
 first-ranked cues (i.e. the downward-facing/sunken surface) are available,
 even though females only gained relatively small fitness rewards through
 secondary cues, and females can integrate different cues associated with
 current rewards and potential safety in a multiplicative way to make
 flexible and complex larviposition decisions. Overall, our findings
 provide new insights into how animals collect and process multi-cue
 information associated with current rewards and potential safety to
 maximize fitness at small spatial scales.
DOI: 10.5061/dryad.83bk3j9mr
title: Host plant phenology, insect outbreaks and herbivore communities – The importance of timing

description: 1. Climate change may alter the dynamics of outbreak species by changing
 the phenological synchrony between herbivores and their host plants. As
 host plant phenology has a genotypic component that may interact with
 climate, infestation levels among genotypes might change accordingly. When
 the outbreaking herbivore is active early in the season, its infestation
 levels may also leave a detectable imprint on herbivores colonizing the
 plant later in the season. 2. In this study, we first investigated how the
 spring phenology and genotype of Quercus robur influenced the density of
 the spring-active, outbreaking leaf miner Acrocercops brongniardellus. We
 then assessed how intraspecific density affected the performance of A.
 brongniardellus and how oak genotype and density of A. brongniardellus
 affected the insect herbivore community. 3. We found that Q. robur
 individuals of late spring phenology were more strongly infested by A.
 brongniardellus. Conspecific pupae on heavily infested oaks tended to be
 lighter, and fewer heterospecific insect herbivores colonized the oak
 later in the season. Beyond its effects through phenology, plant genotype
 left an imprint on herbivore species richness and on two insect
 herbivores. 4. Our results suggest a chain of knock-on effects from plant
 phenology, through the outbreaking species to the insect herbivore
 community. Given the finding of how phenological synchrony between the
 outbreak species and its host plant influences infestation levels, a shift
 in synchrony may then change outbreak dynamics and cause cascading effects
 on the insect community.
DOI: 10.5061/dryad.8pk0p2nj0
title: Data from: Modelling species distributions limited by geographic barriers: a case study with African and American primates

description: Aim: The boundaries of species distributions are often shaped by natural
 barriers such as mountains and rivers, but species distribution models
 usually fail to include these constraints. We tested several approaches
 that include barriers as explanatory variables in species distribution
 models. Location: Africa and South America. Time period: Current Major
 taxa studied: Primates Methods: We modelled the ranges of pairs of species
 separated by a river taking into account three explanatory components: the
 environment (ecosystems, topo-hydrography, climate, human pressure), the
 spatial structure shaped by history and population dynamics (using a
 trend-surface approach), and rivers as naturals barriers to dispersal
 (using a binary cis-trans variable that describes both sides of the
 river). To assess how the addition of a spatial structure and the barrier
 could improve distribution models, we used a nested approach by comparing
 models based on: a) the environment; b) the environment and the spatial
 structure; and c) the environment, the spatial structure and the river.
 These models were constructed using the favourability functions. Results:
 There was a decreased occurrence of high-favourability values in the
 opposite side of the rivers in models that included the spatial structure
 of distributions, compared to models based on environment alone. This
 decrease was more marked when the description of the spatial structure was
 made more flexible. However, model performance was significantly improved
 by the inclusion of cis-trans variables that identified areas on the
 opposite side as totally unfavourable. Main conclusions: The performance
 of distribution models can improve by the use of approaches that describe
 barriers. Although adding the location of geographic units in relation to
 a river appears to be the most accurate way to define the presence of a
 barrier, defining this variable may be challenging. A suitable alternative
 is to analyse the spatial structure of distributions using a flexible
 approach.
DOI: 10.5061/dryad.cnp5hqc1d
title: Data from: How neighbourhood interactions control the temporal stability and resilience to drought of trees in mountain forests

description: 1. Over the coming decades, the predicted increase in frequency and
 intensity of extreme events such as droughts is likely to have a strong
 effect on forest functioning. Recent studies have shown that species
 mixing may buffer the temporal variability of productivity. However, most
 studies have focused on temporal stability of productivity, while species
 mixing may also affect forest resilience to extreme events. Our
 understanding of mechanisms underlying species mixing effects on forest
 stability and resilience remains limited because we ignore how changes
 from intraspecific to interspecific interactions in the neighbourhood of a
 given tree might affect its stability and resilience to extreme drought
 (i.e. response during and after this drought). This is crucial to better
 understand forests’ response to climate change and how diversity may help
 maintain forest functioning. 2. Here we analysed how local intra‐ or
 interspecific interactions may affect the temporal stability and
 resilience to drought of individual trees in French mountain forests,
 using basal area increment data over the previous 20 years for Fagus
 sylvatica, Abies alba and Quercus pubescens. We analysed the effect of
 interspecific competition on (a) the temporal stability and (b) the
 resilience to drought (resistance and recovery) of individual tree radial
 growth. 3. We found no significant interspecific competition effect on
 temporal stability, but species‐specific effects on tree growth resilience
 to drought. There was a positive effect of heterospecific proportion on
 the drought resilience of Q. pubescens, a negative effect for A. alba and
 no effect for F. sylvatica. These differences may be related to
 interspecific differences in water use or rooting depth. 4. Synthesis: In
 this study, we showed that stand composition influences individual tree
 growth resilience to drought, but this effect varied depending on the
 species and its physiological responses. Our study also highlighted that a
 lack of biodiversity effect on long‐term stability might hide
 important effects on short‐term resilience to extreme climatic events.
 This may have important implications in the face of climate change.
DOI: 10.5061/dryad.7m0cfxpq3
title: Data from: Bryophyte community composition and diversity are indicators of hydrochemical and ecological gradients in temperate kettle hole mires in Ohio, USA

description: Peatlands are subject to increased pressure from environmental and
 land-use change, particularly in temperate regions such as the US Midwest.
 Bryophytes dominate the ground cover of peatlands and play a key role in
 their functioning. Effective management and restoration of degraded
 peatlands requires good understanding of their bryophyte communities, and
 how these are shaped by environmental conditions. Furthermore, bryophytes
 are sensitive indicators of environmental conditions. We monitored
 microhabitat characteristics (hydrology, hydrochemistry, abundance of
 vascular vegetation, microtopography) alongside bryophyte community
 composition in nine kettle hole mires in Ohio (USA). We found that the
 most important drivers of bryophyte community composition and diversity
 were water level and hydrochemistry. Sampling locations showing poor fen
 characteristics (high water level, pH and electrical conductivity) were
 associated with generalist pleurocarpous mosses (indicator species:
 Amblystegium serpens) and lower species richness. Where bog conditions
 prevailed, Sphagnum species dominated, and Sphagnum fallax and the
 liverwort Cephalozia sp. were indicator species.
description: The datasets detail bryophyte surveys carried out in nine kettle
 hole mires in Ohio (US) during 2017, as well as hydrological,
 hydrochemical and biotic variables associated with the sampling locations.
 For details, see the published article (Mires and Peat, volume 24, article
 37) at http://mires-and-peat.net/media/map24/map_24_37.pdf.
description: # Data from: Bryophyte community composition and diversity are indicators
 of hydrochemical and ecological gradients in temperate kettle hole mires
 in Ohio, USA Give a brief
 summary of dataset contents, contextualized in experimental procedures and
 results. ## Description of the data and file structure This is a freeform
 section for you to describe how the data are structured and how a
 potential consumer might use them. Be as descriptive as necessary. Keep in
 mind that users of your data might be new to the field and unfamiliar with
 common terminology, metrics, etc. Describe relationships between data
 files, missing data codes, other abbreviations used. Be as descriptive as
 possible. ## Code/Software This is an optional, freeform section for
 describing any code in your submission and the software used to run it.
 Describe any scripts, code, or notebooks (e.g., R, Python, Mathematica,
 MatLab) as well as the software versions (including loaded packages) that
 you used to run those files. If your repository contains more than one
 file whose relationship to other scripts is not obvious, provide
 information about the workflow that you used to run those scripts and
 notebooks.
DOI: 10.5061/dryad.79cnp5hrg
title: Data from: Global diversification dynamics since the Jurassic: Low dispersal and habitat-dependent evolution explain hotspots of diversity and shell disparity in River Snails (Viviparidae)

description: The Viviparidae, commonly known as River Snails, is a dominant group of
 freshwater snails with a nearly worldwide distribution that reaches its
 highest taxonomic and morphological diversity in Southeast Asia. The rich
 fossil record is indicative of a probable Middle Jurassic origin on the
 Laurasian supercontinent where the group started to diversify during the
 Cretaceous. However, it remains uncertain when and how the biodiversity
 hotspot in Southeast Asia was formed. Here, we used a comprehensive
 genetic dataset containing both mitochondrial and nuclear markers and
 comprising species representing 24 out of 28 genera from throughout the
 range of the family. To reconstruct the spatiotemporal evolution of
 viviparids on a global scale, we reconstructed a fossil-calibrated
 phylogeny. We further assessed the roles of cladogenetic and anagenetic
 events in range evolution. Finally, we reconstructed the evolution of
 shell features by estimating ancestral character states to assess whether
 the appearance of sculptured shell morphologies was driven by major
 habitat shifts. The molecular phylogeny supports the monophyly of the
 three subfamilies, the Bellamyinae, Lioplacinae, and Viviparinae, but
 challenges the currently accepted genus-level classification in several
 cases. The almost global distribution of River Snails has been influenced
 both by comparatively ancient vicariance and more recent founder events.
 In Southeast Asia, Miocene dispersal was a main factor in shaping the
 modern species distributions. A recurrent theme across different viviparid
 taxa is that many species living in lentic waters exhibit sculptured
 shells, whereas only one strongly sculptured species is known from lotic
 environments. We show that such shell sculpture is habitat-dependent and
 indeed evolved several times independently in lentic River Snails.
 Considerably high transition rates between shell types in lentic habitats
 probably caused the co-occurrence of morphologically distinct shell types
 in several lakes. In contrast, directional evolution towards smooth shells
 in lotic habitats, as identified in the present analyses, explains why
 sculptured shells are rarely found in these habitats. However, the
 specific factors that promoted changes in shell morphology require further
 work.