cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c54f1mj64
title: MassIVE Reanalysis RMSV000000354.2801 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CDC16 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19205217
title: FITBacteroides.mat

description: This contains the data for running code to obtain the results for "Characterizing differences in sources and contributions to fecal contamination of sediment and surface water with the microbial FIT framework"(associated with the ID es-2022-00224x) <br>In this .mat file, there are 8 objects in the workspace. 1) ARGdatav1- this is the geographic and state plane coordinates of sampling locations, the sampling site name, the date of sampling in MATLAB Datenum format, the season of sampling, the associated watershed, the E. coli concentration per 100 mL, the date in Datetime format, the average monthly ambient temperature obtained from NOAA, then the log10 relative abundances of HuBac in riverbed sediment, HuBac in surface water, BoBac in riverbed sediment, and BoBac in surface water, the last column indicates below detects (which only occurred for the absolute abundance of HuBac in surface water). <br>2) ExampleResponses- A structure containing the response data (location and measured value) used for the examples of Find and Inform stages of FIT (without NaNs). <br>3) ExampleSources- A structure containing the source data (location and scale) used for the examples of Find and Inform stages of FIT. These come from publicly available databases, so we are able to put them directly online. <br>4) The table of precipitation data from NOAA, where each column corresponds to a date. The first column represents the daily precipitation value 90 days back from the last sampling date. This is used in the precipitation objective function. <br>5) The data tables needed to run the results for the Test stage of FIT for the log10 relative abundance of BoBac in sediment<br>6) The data tables needed to run the results for the Test stage of FIT for the log10 relative abundance of BoBac in surface water<br><br>7) The data tables needed to run the results for the Test stage of FIT for the log10 relative abundance of HuBac in sediment<br><br>8) The data tables needed to run the results for the Test stage of FIT for the log10 relative abundance of HuBac in surface<br><br><br>
DOI: 10.6084/m9.figshare.19205217.v1
title: FITBacteroides.mat

description: This contains the data for running code to obtain the results for "Characterizing differences in sources and contributions to fecal contamination of sediment and surface water with the microbial FIT framework"(associated with the ID es-2022-00224x) <br>In this .mat file, there are 8 objects in the workspace. 1) ARGdatav1- this is the geographic and state plane coordinates of sampling locations, the sampling site name, the date of sampling in MATLAB Datenum format, the season of sampling, the associated watershed, the E. coli concentration per 100 mL, the date in Datetime format, the average monthly ambient temperature obtained from NOAA, then the log10 relative abundances of HuBac in riverbed sediment, HuBac in surface water, BoBac in riverbed sediment, and BoBac in surface water, the last column indicates below detects (which only occurred for the absolute abundance of HuBac in surface water). <br>2) ExampleResponses- A structure containing the response data (location and measured value) used for the examples of Find and Inform stages of FIT (without NaNs). <br>3) ExampleSources- A structure containing the source data (location and scale) used for the examples of Find and Inform stages of FIT. These come from publicly available databases, so we are able to put them directly online. <br>4) The table of precipitation data from NOAA, where each column corresponds to a date. The first column represents the daily precipitation value 90 days back from the last sampling date. This is used in the precipitation objective function. <br>5) The data tables needed to run the results for the Test stage of FIT for the log10 relative abundance of BoBac in sediment<br>6) The data tables needed to run the results for the Test stage of FIT for the log10 relative abundance of BoBac in surface water<br><br>7) The data tables needed to run the results for the Test stage of FIT for the log10 relative abundance of HuBac in sediment<br><br>8) The data tables needed to run the results for the Test stage of FIT for the log10 relative abundance of HuBac in surface<br><br><br>
DOI: 10.25345/c50p0wr3g
title: MassIVE Reanalysis RMSV000000354.2882 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, GRIA3 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19199171
title: Digitized landmarks

description: tps file of landmarks digitized from the carapaces of mitten crabs collected in Belgium, Poland, Germany, China and Japan
DOI: 10.6084/m9.figshare.19199171.v2
title: Digitized landmarks

description: tps file of landmarks digitized from the carapaces of mitten crabs collected in Belgium, Poland, Germany, China and Japan
DOI: 10.6084/m9.figshare.19199171.v1
title: Digitized landmarks

description: tps file of landmarks digitized from the carapaces of mitten crabs collected in Belgium, Poland, Germany, China and Japan
DOI: 10.25345/c5r49g92x
title: MassIVE Reanalysis RMSV000000354.2883 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, RAB7B [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5vx0637s
title: MassIVE Reanalysis RMSV000000354.2880 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CREB5 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5mc8rg7p
title: MassIVE Reanalysis RMSV000000354.2884 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, HLA-F [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5gm81p3x
title: MassIVE Reanalysis RMSV000000354.2881 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, GBP5 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5bv79w08
title: MassIVE Reanalysis RMSV000000354.2885 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ZNF549 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c57659g0n
title: MassIVE Reanalysis RMSV000000354.2886 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, LUC7L [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c53f4kn7c
title: MassIVE Reanalysis RMSV000000354.2889 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PRSS45 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19205274
title: KewauneeCounty_RiverNetwork

description: This file contains the river network information needed for obtaining flow and connectivity of the river networks in Kewaunee County, Wisconsin. <br>1) fC- Flow connectivity matrix between all the nodes of the river network<br>2) FI- coordinates in state plane (c1, c2), river reach (c3), downstream contributing river lengths (c4), upstream contributing river miles (c5)<br>3) The stream distance (way the fish swims) between each river network node as a distance matrix<br>4) Strahler Order Flow <br>5) Upstream contributing river lengths (in meters)
DOI: 10.6084/m9.figshare.19205274.v1
title: KewauneeCounty_RiverNetwork

description: This file contains the river network information needed for obtaining flow and connectivity of the river networks in Kewaunee County, Wisconsin. <br>1) fC- Flow connectivity matrix between all the nodes of the river network<br>2) FI- coordinates in state plane (c1, c2), river reach (c3), downstream contributing river lengths (c4), upstream contributing river miles (c5)<br>3) The stream distance (way the fish swims) between each river network node as a distance matrix<br>4) Strahler Order Flow <br>5) Upstream contributing river lengths (in meters)
DOI: 10.25345/c5zp3w11x
title: MassIVE Reanalysis RMSV000000354.2890 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PRICKLE3 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5tx35662
title: MassIVE Reanalysis RMSV000000354.2887 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, RABGGTA [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5q52fd1r
title: MassIVE Reanalysis RMSV000000354.2888 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, RIN2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19205277
title: KewauneeCounty_Wisconsin_RoadNetwork

description: This file contains a graph structure describing the road network connectivity, the length of each road segment, and the spatial coordinates of each of the road network nodes.
DOI: 10.6084/m9.figshare.19205277.v1
title: KewauneeCounty_Wisconsin_RoadNetwork

description: This file contains a graph structure describing the road network connectivity, the length of each road segment, and the spatial coordinates of each of the road network nodes.
DOI: 10.5517/ccdc.csd.cc28mvqh
title: CCDC 2104457: Experimental Crystal Structure Determination

description: Related Article: Liang-Hua Jie, Bin Guo, Jinshuai Song, Hai-Chao Xu|2022|J.Am.Chem.Soc.|144|2343|doi:10.1021/jacs.1c12762
DOI: 10.5517/ccdc.csd.cc28nyyv
title: CCDC 2105518: Experimental Crystal Structure Determination

description: Related Article: Nelson Y. S. Lam, Zhoulong Fan, Kevin Wu, Han Seul Park, Su Yong Shim, Daniel A. Strassfeld, Jin-Quan Yu|2022|J.Am.Chem.Soc.|144|2793|doi:10.1021/jacs.1c12654
DOI: 10.5517/ccdc.csd.cc28wbvc
title: CCDC 2111653: Experimental Crystal Structure Determination

description: Related Article: Wei-Cheng Zhao, Rui-Peng Li, Chao Ma, Qi-Ying Liao, Miao Wang, Zhi-Tao He|2022|J.Am.Chem.Soc.|144|2460|doi:10.1021/jacs.1c11842
DOI: 10.25345/c5kd1qk70
title: MassIVE Reanalysis RMSV000000354.2893 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CPNE7 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5fn10s4q
title: MassIVE Reanalysis RMSV000000354.2891 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ANXA4 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19205163
title: Supplementary Table 1-2

description: <b>Supplementary Table 1.</b> Demographics of bipolar disorder subjects and matching control subjects in the RNA-sequencing cohort used in Akula et al. Abbreviations: PMI – post-mortem interval, RIN – RNA integrity number<br><b>Supplementary Table 2. </b>Summary of data sources for BD-associated genes used in current study
DOI: 10.6084/m9.figshare.19205163.v1
title: Supplementary Table 1-2

description: <b>Supplementary Table 1.</b> Demographics of bipolar disorder subjects and matching control subjects in the RNA-sequencing cohort used in Akula et al. Abbreviations: PMI – post-mortem interval, RIN – RNA integrity number<br><b>Supplementary Table 2. </b>Summary of data sources for BD-associated genes used in current study
DOI: 10.6084/m9.figshare.19204758.v1
title: Supplementary Table 5

description: <b>Supplementary Table 5.</b> Ranking metrics of eQTL genes
DOI: 10.6084/m9.figshare.19204758
title: Supplementary Table 5

description: <b>Supplementary Table 5.</b> Ranking metrics of eQTL genes
DOI: 10.25345/c59z90c3r
title: MassIVE Reanalysis RMSV000000354.2892 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, B3GALT2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19204631
title: Supplementary Table 4

description: Supplementary Table 4. List of enriched GO terms from “Biological Process” ontology. GeneRatio - ratio of the corresponding pathway gene number within the list of submitted genes to the all GO pathways’ gene number in the submitted listBgRatio - ratio of the corresponding pathway gene number to all GO pathways’ gene number.
DOI: 10.6084/m9.figshare.19204631.v1
title: Supplementary Table 4

description: Supplementary Table 4. List of enriched GO terms from “Biological Process” ontology. GeneRatio - ratio of the corresponding pathway gene number within the list of submitted genes to the all GO pathways’ gene number in the submitted listBgRatio - ratio of the corresponding pathway gene number to all GO pathways’ gene number.
DOI: 10.6084/m9.figshare.19204746
title: Supplementary Table 3

description: Supplementary Table 3. Primers used in the study
DOI: 10.6084/m9.figshare.19204746.v1
title: Supplementary Table 3

description: Supplementary Table 3. Primers used in the study
DOI: 10.25345/c56688k0d
title: MassIVE Reanalysis RMSV000000354.2895 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, AOC3 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c52f7jr55
title: MassIVE Reanalysis RMSV000000354.2894 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, REEP5 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5xp6v393
title: MassIVE Reanalysis RMSV000000354.2897 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SPATA13 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.