cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5524/102679
title: Genome assembly of the Hong Kong Orchid Tree <i>Bauhinia blakeana</i>

description: <i>Bauhinia × blakeana</i>, known as the Hong Kong orchid tree, is a hybrid leguminous species that emerged in Hong Kong in 1880. This ornamental tree is distinguished by its large, heart- or butterfly-shaped, double-lobed leaves, also referred as "clever leaves" and symbols of wisdom in Kong Kong, and its striking purplish-red flowers, which resemble orchids and typically range from 10 to 15 cm in diameter. The tree blooms from early November to late March. All cultivated individuals are descendants of a single specimen from the Hong Kong Botanical Gardens, which has been propagated since 1914. Notably, this tree is sterile and does not produce seeds or fruits; it is a hybrid of <i>Bauhinia variegata</i> and <i>Bauhinia purpurea</i>, with the latter identified as the female parent. [adapted from wikipedia.org] <br>We present a publicly available haplotype-resolved telomere-to-telomere (T2T) genome assembly of the Hong Kong Orchid Tree <i>Bauhinia x blakeana</i>, with 711 Gb (~2,451 fold coverage) of sequence data. The complete assembly spans 290.97 Mb, with contig N50 of 19.54 Mb (Hmat) and 20.99 Mb (Hpat), and scaffold N50 of 19.54 Mb (Hmat) and 20.99 Mb (Hpat) anchored onto 14 chromosomes. The BUSCO analysis indicates a completeness of 99.0% (Hmat) and 99.2% (Hpat) (QV 42.39 combined).
DOI: 10.5281/zenodo.15192319
title: Mapping the Structural Landscape of Amyloid Fibrils to Guide Polymorph-Specific Therapeutics

description: Amyloid fibrils are pathological hallmarks of neurodegenerative diseases and central contributors to their progression, representing promising targets for disease-modifying interventions. However, limited access to patient-derived fibrils and the inability to reproduce pathological folds in vitro hinder the development of fibril-specific ligands. Here, we present FibrilSite, a computational pipeline that identifies geometric and physicochemical similarities across fibril surfaces and demonstrate its utility to identify structural features that distinguish different fibril polymorphs. Our analysis uncovered conserved and polymorph-specific features within alpha-synuclein fibrils. Notably, one site was conserved between ex vivo multiple system atrophy and in vitro H50Q mutant fibrils, suggesting the latter’s potential utility in drug discovery. Druggability predictions further prioritized ligandable sites across fibrils. Together, our findings establish a structure-based framework for identifying disease-relevant features and mapping them onto suitable in vitro models, guiding the rational development of polymorph-specific diagnostics and therapeutics for amyloid-related disorders with improved translational potential.
DOI: 10.5281/zenodo.15192320
title: Mapping the Structural Landscape of Amyloid Fibrils to Guide Polymorph-Specific Therapeutics

description: Amyloid fibrils are pathological hallmarks of neurodegenerative diseases and central contributors to their progression, representing promising targets for disease-modifying interventions. However, limited access to patient-derived fibrils and the inability to reproduce pathological folds in vitro hinder the development of fibril-specific ligands. Here, we present FibrilSite, a computational pipeline that identifies geometric and physicochemical similarities across fibril surfaces and demonstrate its utility to identify structural features that distinguish different fibril polymorphs. Our analysis uncovered conserved and polymorph-specific features within alpha-synuclein fibrils. Notably, one site was conserved between ex vivo multiple system atrophy and in vitro H50Q mutant fibrils, suggesting the latter’s potential utility in drug discovery. Druggability predictions further prioritized ligandable sites across fibrils. Together, our findings establish a structure-based framework for identifying disease-relevant features and mapping them onto suitable in vitro models, guiding the rational development of polymorph-specific diagnostics and therapeutics for amyloid-related disorders with improved translational potential.
DOI: 10.15468/dl.zkgn6x
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amietia poyntoni Channing & Baptista, 2013",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.0214 -34.0501,25.5395 -34.1098,25.5395 -32.9007,20.509 -32.9007,20.509 -34.5676,20.524 -34.555,20.8859 -34.5419,20.9606 -34.4398,21.2995 -34.5131,21.5296 -34.4338,21.8696 -34.4439,22.0323 -34.2835,22.221 -34.2428,22.2566 -34.1304,22.5993 -34.0741,22.9652 -34.1674,23.4069 -34.1858,23.4955 -34.0792,23.6056 -34.0563,24.8471 -34.2877,24.9447 -34.2397,25.0214 -34.0501))"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030532-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5524/102680
title: Genome assembly of the Orchid Tree <i>Bauhinia purpurea</i>

description: <i>Bauhinia purpurea</i>, a member of the Fabaceae family, is indigenous to the Indian subcontinent and Myanmar, yet it has been extensively cultivated in tropical and subtropical areas worldwide. Commonly referred to as the orchid tree or purple bauhinia, this species typically develops into a small to medium-sized deciduous tree, attaining heights of up to 5.2 meters. The leaves are arranged alternately, are bilobed, and range from 10 to 20 cm in length. The flowers, which are pink and fragrant, feature five petals. The plant produces elongated pods that contain between 12 and 16 seeds. In the United States, it flourishes particularly in Hawaii, coastal California, southern Texas, and southwest Florida. The young leaves and flowers are edible and are utilized in Filipino cuisine as a souring agent. Furthermore, various components of the plant are used in traditional medicine throughout Southeast Asia and India to address conditions such as inflammation, coughs, and gastrointestinal disturbances. [adapted from wikipedia.org] <br>We present a publicly available chromosome-level genome assembly of the Orchid Tree <i>Bauhinia purpurea</i>, with 136.6 Gb (~450 fold coverage) of sequence data. The complete assembly spans 303.68 Mb, with contig N50 of 161 kb, and scaffold N50 of 1.5 Mb anchored onto 14 chromosomes. The BUSCO analysis indicates a completeness of 98.6%.
DOI: 10.15468/dl.qwy98n
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tarenna hutchinsonii Bremek."
 ]
}

 The dataset includes 102 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030534-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/6tyj4y
title: Bauhinia Genome Presents: Bauhinia Watch

description: Hong Kong’s emblem is the beautiful Bauhinia flower and appears on the Hong Kong flag and currency. This is the flower of the orchid tree Bauhinia blakeana, which was first discovered in Hong Kong. What many people may not know is that it is a sterile hybrid, and how and why it ended up in Hong Kong is shrouded in mystery. It is thought that the species is likely a hybrid of two local species, Bauhinia variegata and Bauhinia purpurea, but this had yet to be confirmed at a genomic scale.
One of the best ways to help uncover the secrets of any organism is by understanding its genetic makeup. Genomics, sequencing of the genetic code of organisms, provides a complete look into the genetic complement of any species. It is also one of the key technologies that will define the 21st century. By bringing together the emblematic and mysterious Bauhinia flower and the power and knowledge of genome technology, we can build a bridge between science and community— enlightening our understanding of this plant’s interesting biology and informing and educating the public about this exciting and rapidly advancing field.
To build such a collaborative endeavor, BauhiniaGenome launched the Hong Kong genome project through which they sequenced the genome of the Hong Kong emblem to better understand where it came from; train local students to assemble and analyse the data — crucial skills needed for this field to advance; and engage the public through local pride.
DOI: 10.15468/dl.89fvqt
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.15_1",
 "TaxonKey is one of (Gekko hokouensis Pope, 1928, Gekko japonicus (Schlegel, 1836), Gekko swinhonis Günther, 1864)"
 ]
}

 The dataset includes 43 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030533-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5524/102681
title: Genome assembly of the Orchid Tree <i>Bauhinia variegata</i>

description: <i>Bauhinia variegata</i>, belonging to the Fabaceae family, is a medium-sized deciduous tree indigenous to areas extending from China through Southeast Asia to the Indian subcontinent. Commonly known as the orchid tree or mountain ebony, it typically attains heights of 10 to 12 meters and is characterized by its unique obcordate leaves, which measure between 10 and 20 cm. The tree's flowers, which can be either pink or white and range from 8 to 12 cm in diameter, are particularly attractive to a variety of pollinators due to their aesthetic appeal. Upon maturation, it produces a distinctive seedpod that measures 15 to 30 cm in length, which twists and explosively disperses its seeds. This tree is appreciated not only for its ornamental value but also for its edible buds, referred to as kachnar, which are essential components in traditional culinary practices across the Indian subcontinent. Furthermore, it is recognized for its significant antioxidant and anticancer properties and holds a prominent place in local gastronomy, especially in Nepal during cultural celebrations. [adapted from wikipedia.org] <br>We present a publicly available chromosome-level genome assembly of the Orchid Tree <i>Bauhinia variegata</i>, with 96.4 Gb (~307 fold coverage) of sequence data. The complete assembly spans 314.49 Mb, with contig N50 of 109 kb, and scaffold N50 of 2.6 Mb anchored onto 14 chromosomes. The BUSCO analysis indicates a completeness of 98.9%.
DOI: 10.15468/dl.7fc5au
title: Occurrence Download

description: A dataset listing the 4658 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "GadmGid is ESP.5_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset's 4658 records were derived from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030526-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12107099
title: Trending Youtube Video Statistics (113 Countries)
DOI: 10.15468/dl.r6bep4
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iris boissieri Henriq."
 ]
}

 The dataset includes 149 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030535-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15623354
title: 증명 업적
DOI: 10.5281/zenodo.15623355
title: 증명 업적
DOI: 10.15468/dl.t82rrz
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amietia poyntoni Channing & Baptista, 2013",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((32.064 -28.9416,32.4847 -28.5786,30.5701 -28.5786,30.5701 -30.7329,30.6252 -30.6659,31.4179 -29.4257,31.8178 -29.0299,32.064 -28.9416))"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030536-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5524/102671
title: Supporting data for "Chromosome-scale assemblies of three Ormosia species: Repetitive sequences distribution and structural rearrangement"

description: The genus <i>Ormosia</i> is in Fabaceae family. China is one of its centers with almost all of its species endemic, suggesting need for genomic studies to understand its evolution and help its conservation and usage. Therefore, the chromosome-scale assembly of <i>O. purpureiflora</i> was performed, and that for <i>O. emarginata</i> and <i>O. semicastrata</i> were updated. <br>The genome assembly sizes of the three species varied from 1.42 to 1.58 Gb, and <i>O. purpureiflora</i><em> </em>was the largest. Repeats accounted for 74.076.3% of sequences in the assemblies; the predicted genes varied from 50,517 to 55,061. <br>Repeats contributed largely to the <i>Ormosia</i> chromosome architectures, in which Helitron and Terminal Inverted Repeat (TIR) were associated with gene distribution, while <i>Gypsy</i> and unknown LTR were related to structural rearrangements. <br><i>Ormosia</i> contained substantial resistance (<i>R</i>) genes but fewer transcription factor genes. Alkaloid-, terpene- and flavonoid-related genes were found with tandem or proximal duplications. Some growth- and defense-related genes were missed in <i>O. purpureiflora</i>. <br>By resequencing 153 genotypes (~30 Gb data each) in 6 <i>O. purpureiflora</i> (sub)populations, 276,854 high-quality single nucleotide polymorphisms (SNPs) were identified, in which 2632 were presumably adaptive SNPs, and their function was mainly related to carbohydrate metabolism. High genetic diversity in <i>O. purpureiflora</i> was revealed even though it had very small populations. A weak and absent spatial genetic structures indicating high pollen flows within/among the (sub)populations. An approximately 30-Mb region on chromosome 5 was found to likely be under balancing selection. <br>The <i>Ormosia</i> assemblies provide valuable resources for evolutionary study, conservation and utility in both <i>Ormosia</i> and Fabaceae.
DOI: 10.5281/zenodo.15623330
title: Dataset_raw_Fashion Marketing Performance 160
DOI: 10.5281/zenodo.15623331
title: Dataset_raw_Fashion Marketing Performance 160
DOI: 10.5524/102672
title: The genomic data of <i>Ormosia purpureiflora</i>.

description: <i>Ormosia purpureiflora</i> is an endangered species that is endemic to China. It is currently only known to a single location at Luofushan Provincial Nature Reserve in Huizhou of Guangdong Province. It is named after its purple flowers. It is a small tree only up to 3 m. Its leaves are imparipinnate, 56 pairs, leathery. It has racemose inflorescences. Its flowers are 5-merous and calyx is campanulate. Its pod is oval or oblong, contains 26 seeds. (Zheng-Feng Wang et al. (2021))<br>In this study, an <i>Ormosia purpureiflora</i> individual collected from LFS was used for genome assembly. Genomic DNA was isolated from its leaf tissues and multiple libraries were constructed, including long- and short-read WGS and Hi-C libraries. For gene annotation, RNA was extracted from the same individual used for genome assembly, specifically from its leaves, flowers, seeds and fruit. The initial genome assembly size was 1,811,176,403 bp, comprising 313 contigs with an N50 of 50,908,349 bp. After redundancy removal, Hi-C scaffolding and gap closing, the final assembly measured 1,584,128,722, with 1,583,483,254 bp (99.96%) anchored to 8 chromosomes, consistent with chromosome number observation. The longest chromosome was 259,935,025 bp long, and the shortest was 121,398,155 bp.
DOI: 10.5524/102673
title: The genomic data of <i>Ormosia semicastrata</i>.

description: <i>Ormosia semicastrata</i> is an evergreen tree, up to 19 m. The bark is white to dark grayish, and greenish brown to brown; lenticels are convex with irregular cracks. Branchlets pilose with grayish brown or yellowish hairs, or sometimes subglabrous. Leaves imparipinnate, 14 36 cm; petiole, rachis and petiolules pilose with appressed grayish-brown hairs, or glabrous; leaflets 3 9 ( 13), leathery to thickly leathery, oblong to ovate-oblong or oblong-obovate, elliptic, lanceolate, oblong-lanceolate to oblanceolate, 4.0 14.5 × 1.0 5.7 cm, glabrous on both surfaces, sometimes vernicose adaxially, sometimes glaucous or pilose along mid-vein abaxially, apex acute to acuminate, obtuse or retuse, base rounded, broadly cuneate to cuneate or somewhat obtuse. (GBIF) <br>The initial assemblies for <i>Ormosia semicastrata</i> were 1,511,766,959 bp. GenomeScope estimations using a k-mer size 21 revealed repeat contents of 63.4%, and heterozygosity rates of 2.05% for <i>O. semicastrata</i>. After incorporating Hi-C data, the assembly sizes of <i>O. semicastrata</i> were refined to 1,510,687,319 bp. The assembly achieved 8 chromosome-level scaffolds, which accounted for 99.97% of the total in <i>O. semicastrata</i>. In <i>O. semicastrata</i>, the completeness score was 96.3% (89.6% complete and single-copy, 6.7% complete but duplicated), with 1.4% fragmented and 2.3% missing genes.
DOI: 10.15468/dl.5sshu7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amietia poyntoni Channing & Baptista, 2013",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.5808 -24.13,35.5909 -24.0715,30.5701 -24.0715,30.5701 -28.5786,32.4847 -28.5786,32.55 -28.5222,33.0346 -26.8668,32.9741 -26.7838,33.0415 -26.059,32.9304 -26.0011,32.7994 -26.1281,32.6834 -26.0015,32.813 -25.8728,32.8513 -25.7166,33.3048 -25.3731,35.1489 -24.6699,35.5808 -24.13))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030538-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amgwsx
title: Occurrence Download

description: A dataset containing 10314800 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 10314800 records from 4907 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030508-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e328ux
title: Occurrence Download

description: A dataset containing 126257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caretta caretta (Linnaeus, 1758)",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 126257 records from 375 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020467-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12722034
title: Los amores imprudentes - AmadissigloXX

description: AmadissigloXX. Base de datos de las reescrituras modernas de los libros de caballerías y del Don Quijote (dir. Elisabetta Sarmati)

Ficha de: Gustavo Martín Garzo, "Los amores imprudentes", 2004.

Se ofrecen dos ficheros:



formato JSON: contiene los metadatos asociados a la obra (autor, fuente, año de publicación, idioma, sinopsis del argumento, anotaciones, fuentes caballerescas, bibliografía crítica, enlaces externos)

formato XML: contiene la base de datos completa con indicación de la versión.
DOI: 10.5281/zenodo.12722035
title: Los amores imprudentes - AmadissigloXX

description: AmadissigloXX. Base de datos de las reescrituras modernas de los libros de caballerías y del Don Quijote (dir. Elisabetta Sarmati)

Ficha de: Gustavo Martín Garzo, "Los amores imprudentes", 2004.

Se ofrecen dos ficheros:



formato JSON: contiene los metadatos asociados a la obra (autor, fuente, año de publicación, idioma, sinopsis del argumento, anotaciones, fuentes caballerescas, bibliografía crítica, enlaces externos)

formato XML: contiene la base de datos completa con indicación de la versión.
DOI: 10.15468/dl.s8x8xv
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Solidago spithamaea M.A.Curtis ex A.Gray, Solidago spithamaea M.A.Curtis)"
 ]
}

 The dataset includes 234 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020477-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqrpj7
title: Occurrence Download

description: A dataset containing 14474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidochelys olivacea (Eschscholtz, 1829)",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 14474 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020478-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.taghh9
title: Occurrence Download

description: A dataset containing 3665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acacia fimbriata A.Cunn. ex G.Don"
 ]
}

 The dataset includes 3665 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020480-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.bds08epy
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (332511 records)
DOI: 10.15468/dl.my55db
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Thailand, Cambodia, Viet Nam, Myanmar, Malaysia, Lao People’s Democratic Republic)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Diospyros ferrea (Willd.) Bakh."
 ]
}

 The dataset includes 47 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020482-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.