cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3m66bd1
title: Data from: Bird species diversity in Altai riparian landscapes: wood cover plays a key role for avian abundance

description: Aims: We aim to understand bird richness and variation in species
 composition (beta diversity) along a 630 km riparian landscape in the
 Altai Mountains of China, and to test whether vegetation cover is the main
 explanation of species diversity. Methods: We selected nine regions along
 a gradient of natural vegetation change. Bird surveys and environmental
 measurements were conducted at 10 points in each of the nine regions. We
 collected environmental land cover variables such as wood cover (area
 proportion of trees and shrubs with saplings in habitats; here trees are
 woody plant with a single trunk and higher than 3m, shrubs and saplings
 are distinguished from trees by their multiple trunks and shorter height)
 and tree cover, and two climate factors which were Annual Mean Temperature
 (AMT) and Annual Precipitation (AP). We used Liner Regression Models to
 explore the correlation between bird species richness and environmental
 variables. We used Sørensen’s dissimilarity index to measure birds’ beta
 diversity, and quantified the contribution of environmental variables to
 this pattern using a Canonical Correspondence Analysis (CCA). Results:
 Wood cover was the strongest predictor of overall, insectivore and
 omnivore bird richness. Regions with wood cover contained more bird
 species. Beta diversity was overall high in the studied regions, and
 turnover components occupied a major part of beta diversity. Wood cover
 and AP were significant predictors of bird species composition explaining
 33.24% of bird beta diversity together. Conclusions: Wood vegetation
 including trees, shrubs and saplings, rather than only trees, contains
 high bird richness. High beta diversity suggests that expansion of the
 existing nature reserves is needed in the riparian landscapes to capture
 the variation in bird species composition. Thus all wood cover in the
 overall riparian landscapes of Altai Mountains should be protected from
 farming and grazing to improve bird conservation outcomes.
description: Li-Ecology and
 Evolution-bird dataThis data file gives the
 details of bird record in every sample point and within each samlpe
 region. Region ID, sample point ID, locations of sample points, species
 name and record number of every species are shown.Li-Ecology and
 Evolution-environment dataThis data file gives the
 details of environment values at each sample point and within each sample
 region.
DOI: 10.5061/dryad.fh7845f
title: Data from: Females of a cannibalistic spider control mutilation of their genitalia by males

description: When females can mate multiply, the interests of both sexes over female
 remating may not coincide, leading to selection for adaptations and
 counter-adaptations in males and females. In several orb-weaving spiders,
 males damage external structures of the female genitalia during
 copulation, which hinders the female from remating. We investigated
 whether females have control over the mutilation of their genitalia in the
 orb-weaving spider Larinia jeskovi. We found that female sexual
 cannibalism during copulation reduced the number of insertions a male was
 able to perform and hence limited the probability of genital mutilation by
 the male. Genital mutilation did not differ between treatments in which
 females experienced different availabilities of other males before the
 mating trial: males absent, males near the female ('vicinity
 group'), and males in the female's web ('web group').
 However, traits of the mating male (size, condition) were significantly
 correlated with the occurrence of cannibalism during mating in
 'web' and 'vicinity' treatments. These results suggest
 that females have control over mutilation by an early termination of
 mating, can respond to the availability of potential mates and can alter
 the probability of mutilation according to certain male traits. Female
 sexual cannibalism may represent a counter-adaptation to genital
 mutilation allowing females to mate multiply.
description: Mouginot_Uhl_Data_072019Data produced in a lab experiment with individual spiders collected in the field.Mouginot_Uhl_Data_08072019.xlsx
DOI: 10.25824/redu/2ni9n4
title: Dados do curso "Afetividade: ensino de inglês para crianças por meio da literatura"

description: Os dados foram construídos a partir da oferta de curso de extensão "AFETIVIDADE: ENSINO DE INGLÊS PARA CRIANÇAS POR MEIO DA LITERATURA". Os dados foram construídos por meio de vídeo gravações do curso e anotações em diário de campo, entrevistas com as participantes, questionários e materiais produzidos pelas professoras. Tais dados foram agrupados em Núcleos Temáticos, os quais indicam as concepções das professoras sobre temas abordados no curso.
DOI: 10.5061/dryad.1nq8md7
title: Data from: Head-turning morphologies: evolution of shape diversity in the mammalian atlas-axis complex

description: Mammals flex, extend, and rotate their spines as they perform behaviors
 critical for survival, such as foraging, consuming prey, locomoting, and
 interacting with conspecifics or predators. The atlas-axis complex is a
 mammalian innovation that allows precise head movements during these
 behaviors. While morphological variation in other vertebral regions has
 been linked to ecological differences in mammals, less is known about
 morphological specialization in the cervical vertebrae, which are
 developmentally constrained in number but highly variable in size and
 shape. Here, we present the first phylogenetic comparative study of the
 atlas-axis complex across mammals. We used spherical harmonics to quantify
 3D shape variation of the atlas and axis across a diverse sample of
 species, and performed phylogenetic analyses to investigate if vertebral
 shape is associated with body size, locomotion, and diet. We found that
 differences in atlas and axis shape are partly explained by phylogeny, and
 that mammalian subclades differ in morphological disparity. Atlas and axis
 shape diversity is associated with differences in body size and
 locomotion; large terrestrial mammals have craniocaudally elongated
 vertebrae, while smaller mammals and aquatic mammals have more compressed
 vertebrae. These results provide a foundation for investigating functional
 hypotheses underlying the evolution of neck morphologies across mammals.
description: ATLAS stls
 pre-analysisSTL files of atlas
 vertebrae for all species. Meshes are watertight (transverse foramina and
 vertebral foramina have been filled), smoothed, and reduced to 20k
 triangles in preparation for spherical harmonics
 analysis.AXIS stls
 pre-analysisSTL files of axis
 vertebrae for all species. Meshes are watertight (transverse foramina and
 vertebral foramina have been filled), smoothed, and reduced to 20k
 triangles in preparation for spherical harmonics
 analysis.ATLAS
 landmarksLandmark files for all
 specimens used for registration of 3D atlas meshes in spherical harmonics
 analysis.AXIS
 landmarksLandmark files for all
 specimens used for registration of 3D axis meshes in spherical harmonics
 analysis.SPHARM_coefficients_centroidsThis folder contains csv files with the output of the spherical harmonics analyses for both atlas and axis datasets, including spherical harmonics coefficients and centroid sizes of all models prior to resizing.SPHARM_PCA_PGLS_analysis_5-21-2019This file contains the R code for the Principal Component Analysis (PCA) performed using the spherical harmonics coefficients for the atlas and axis datasets, as well as code used for phylogenetic generalized least squares (PGLS) analyses and data visualization.
DOI: 10.5061/dryad.392gf43
title: Data from: Riparian leaf litter decomposition on pond bottom after a retention on floating vegetation

description: Allochthonous (e.g., riparian) plant litter is among the organic matter
 resources that are important for wetland ecosystems. A compact canopy of
 free-floating vegetation on the water surface may allow for riparian
 litter to remain on it for a period of time before sinking to the bottom.
 Thus, we hypothesised that canopy of free-floating vegetation may slow
 decomposition processes in wetlands. To test the hypothesis that the
 retention of riparian leaf litter on the free-floating vegetation in
 wetlands affects their subsequent decomposition on the bottom of wetlands,
 a 50-day in situ decomposition experiment was performed in a wetland pond
 in subtropical China, in which litter bags of single species with fine
 (0.5 mm) or coarse (2.0 mm) mesh sizes were placed on free-floating
 vegetation (dominated by Eichhornia crassipes, Lemna minor and Salvinia
 molesta) for 25 days and then moved to the pond bottom for another 25 days
 or remained on the pond bottom for 50 days. The leaf litter was collected
 from three riparian species, i.e., Cinnamomum camphora, Diospyros kaki and
 Phyllostachys propinqua. The retention of riparian leaf litter on
 free-floating vegetation had significant negative effect on the carbon
 loss, marginal negative effects on the mass loss and no effect on the
 nitrogen loss from leaf litter, partially supporting the hypothesis.
 Similarly, the mass and carbon losses from leaf litter decomposing on the
 pond bottom for the first 25 days of the experiment were greater than
 those from the litter decomposing on free-floating vegetation. Our results
 highlight that in wetlands, free-floating vegetation could play a vital
 role in litter decomposition, which is linked to the regulation of
 nutrient cycling in ecosystems.
description: Mass and nutrient loss
 of three litter decomposition0Above-submerged
 data.xlsx
DOI: 10.5061/dryad.v815n58
title: Data from: The visual speech head start improves perception and reduces superior temporal cortex responses to auditory speech

description: Visual information about speech content from the talker's mouth is
 often available before auditory information from the talker's voice.
 Previously we demonstrated that audiovisual speech selectively enhances
 activity in regions of the early visual cortex representing the mouth of
 the talker (Ozker et al., 2018b). Here we examined perceptual and neural
 responses to words with and without this visual head start. For both types
 of words, perception was enhanced by viewing the talker's face, but
 the enhancement was significantly greater for words with a head start.
 Neural responses were measured from electrodes implanted over auditory
 association cortex in the posterior superior temporal gyrus (pSTG) of
 epileptic patients. The presence of visual speech suppressed responses to
 auditory speech, more so for words with a visual head start. We suggest
 that the head start inhibits representations of incompatible auditory
 phonemes, increasing perceptual accuracy and decreasing total neural
 responses. Together with previous work showing visual cortex modulation
 (Ozker et al., 2018b) these results from pSTG demonstrate that
 multisensory interactions are a powerful modulator of activity throughout
 the speech perception network.
description: Experiment 1 behavioral
 dataRaw output from mturk
 for behavioral experiment 1Batch_3270163_batch_results.csvExperiment 2 behavioral dataRaw data from mturk for behavioral experiment 2Batch_3266022_batch_results.csvAnalysis code for behavioral experiment 1behavior_exp1.RAnalysis code for behavioral experiment 2behavior_exp2.RHelper functions for analyzing behavioral dataNote that several external packages are used here, so you may need to install.packages to get these to work. All packages are on CRAN, except for rutabaga, which is a lab package available from GitHub: devtools::install_github('dipterix/rutabaga')behavior_functions.RStatistical power simulation (behavior)behavior_power_analysis.RiEEG dataThe broadband high-frequency activity (75-150Hz) is stored in the column labelled "y". Time is relative to the onset of the auditory stimulus. The data are already baseline corrected and trial-outliers have been rejected, wherefore some trial numbers are skipped.congruency_data_set_by_electrode.csvPer-electrode summary statisticsUsed primarily for electrode selection (which electrodes responded to the experimental stimuli).ieeg_summary_stats.csvAnalysis code for the iEEG dataanalyze_ieeg_congruency.RiEEG analysis helper functionsThese functions rely not only on external R packages [all on CRAN except rutabaga, devtools::install_github('dipterix/rutabaga')], but also the AFNI suite of tools for exporting data in the .niml.dset format so they may be viewed in SUMA. The dependency on AFNI is purely graphical and is not necessary to produce the numeric results of the paper.ieeg_analysis_functions.R
DOI: 10.15468/dl.ugkvsr
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((105 20,170 20,170 70,105 70,105 20))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Draba sachalinensis"
 ]
}

 The dataset includes 39 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001817-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.22rn7b7
title: Data from: Why do females sing? Pair communication and other song functions in eastern bluebirds.

description: Female bird song has been underappreciated and understudied, especially in
 temperate species. Birdsong was originally thought to be a trait used
 primarily by male songbirds for mate attraction and male/male contest.
 However, ornithologists have long known that females sing in many tropical
 songbirds, often for similar functions to male song. Yet studies of female
 song in temperate regions remain scarce. Increasing our understanding of
 the function of female song in temperate species is a powerful step
 towards discerning the selective pressures that maintain elaborate female
 signals. In the last few decades, studies of temperate species have
 highlighted five major functional categories of female song. Using a
 modelling framework, based on all known functions of song in other
 species, we tested the function of female song in eastern bluebirds. The
 modelling framework allowed us to test the effect of multiple complex
 behaviors simultaneously to predict female song function. Additionally,
 modelling mitigated issues of multiple testing across the five different
 functional categories. We found that female song in eastern bluebirds is
 primarily used in pair communication. Specifically, females sing to
 strengthen and maintain long-term pair bonds. Strengthening pair-bonds may
 be advantageous for eastern bluebirds as pairs that remain together
 between nesting attempts and between years have higher reproductive
 success. We demonstrate a clear link between the function of female song
 in pair communication and the likely selective force of long-term pair
 bonds acting on eastern bluebird reproductive success. Additionally, our
 study highlights a major function of female song in a temperate species.
description: Why Do Females Sing_Pair
 Communication and Other Song Functions in Eastern Bluebirds
 DATAThis spreadsheet
 contains the behavioral and song responses of male and female Eastern
 Bluebirds during various mount presentations. The first tab contains this
 information within three seconds of each female song. The second tab
 contains this information ten seconds prior to each female song. The third
 tab contains a separate data set. This third set of data contains the
 number of songs female sang in set blocks of time. We used this to
 calculate changes in female song rate. Further descriptions can be found
 within the text of each tab.
DOI: 10.15468/dl.sm3au6
title: Occurrence Download

description: A dataset containing 266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Museo Argentino de Ciencias Naturales \"Bernardino Rivadavia\" (MACN). Mammalogy National Collection (MACNMa)",
 "TaxonKey is Oxymycterus"
 ]
}

 The dataset includes 266 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001816-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6e5wjv
title: Occurrence Download

description: A dataset listing the 467791 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset's 467791 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001790-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.q1g5279
title: Data from: Rigidity percolation control of the brittle-ductile transition in disordered networks

description: In ordinary solids, material disorder is known to increase the size of the
 process zone in which stress concentrates at the crack tip, causing a
 transition from localized to diffuse failure. Here, we report experiments
 on disordered 2D lattices, derived from frictional particle packings, in
 which the mean coordination number $\Z$ of the underlying network provides
 a similar control. Our experiments show that tuning the connectivity of
 the network provides access to a range of behaviors from brittle to
 ductile failure. We elucidate the cooperative origins of this transition
 using a frictional pebble game algorithm on the original, intact lattices.
 We find that the transition corresponds to the isostatic value $\Z = 3$ in
 the large-friction limit, with brittle failure occurring for structures
 vertically spanned by a rigid cluster, and ductile failure for floppy
 networks containing non-spanning rigid clusters. Furthermore, we find that
 individual failure events typically occur within the floppy regions
 separated by the rigid clusters.
description: Data from: Rigidity
 percolation control of the brittle-ductile transition in disordered
 networksataDryadFor each network tested
 in the study we provide the adjacency and particle information used to
 generate the lattice, the measured macroscopic response, the identified
 failure locations and the displacement at which they take
 place.DataDryad.zip
DOI: 10.5061/dryad.9gs1t9b
title: Data from: Experimental traffic noise attracts birds during the breeding season

description: Understanding how anthropogenic disturbance affects animal behavior is
 challenging because observational studies often involve co-occurring
 disturbances (e.g., noise, lighting, and roadways), and laboratory
 experiments often lack ecological validity. During the 2016 and 2017 avian
 breeding seasons, we investigated the effects of anthropogenic noise and
 light on the singing and spatial behavior of wild birds by independently
 manipulating the presence of each type of disturbance at 89 sites in an
 otherwise undisturbed boreal forest in Labrador, Canada. Each treatment
 was surrounded by an 8-channel microphone array that recorded and
 localized avian vocalizations throughout the manipulation. We analyzed the
 effects of noise and light on the timing of the first vocalizations of
 each species at each array during the dawn chorus, and on the proximity of
 the vocalizing birds to the disturbance when those songs were produced. We
 analyzed all species combined, and then conducted separate analyses for
 the six most common species: Boreal Chickadee, Dark-eyed Junco,
 Ruby-crowned Kinglet, Swainson’s Thrush, White-throated Sparrow, and
 Yellow-rumped Warbler. When all species were analyzed together, we found
 that traffic noise attracted vocalizing birds. There was some evidence
 that light repelled birds, but this evidence was inconsistent. In our
 species-specific analyses, Yellow-rumped Warbler sang earlier in response
 to noise; Swainson's Thrush was attracted to noise and the
 combination of noise and light, but repelled by light alone. Our study
 provides some of the first experimental evidence of the independent and
 combined effects of traffic noise and light on the vocal and spatial
 behavior of wild birds, and suggests that breeding birds may be attracted
 to noisy roads where they could be exposed to additional forms of
 disturbance.
description: READMEThis file explains all
 of the variables in the dataset that accompanies: Hennigar B, Ethier JP,
 Wilson DR. 2019ms. Experimental traffic noise attracts birds during the
 breeding season. This file also explains the R script used to reproduce
 all analyses presented in: Hennigar B, Ethier JP, Wilson DR. 2019ms.
 Experimental traffic noise attracts birds during the breeding
 season.Data from
 "Experimental traffic noise attracts birds during the breeding
 season"This file contains all
 of the data used in "Experimental traffic noise attracts birds during
 the breeding season"Hennigar et al
 data.csvR script for analyses
 presented in "Experimental traffic noise attract birds during the
 breeding season"This file contains the R
 script for all analyses presented in "Experimental traffic noise
 attract birds during the breeding season"Hennigar et al
 analysis.R
DOI: 10.5061/dryad.k301s49
title: Data from: How parasite interaction strategies alter virulence evolution in multi-parasite communities

description: The majority of organisms host multiple parasite species, each of which
 can interact with hosts and competitors through a diverse range of direct
 and indirect mechanisms. These within-host interactions can directly alter
 the mortality rate of coinfected hosts and alter the evolution of
 virulence (parasite induced host mortality). Yet we still know little
 about how within-host interactions affect the evolution of parasite
 virulence in multi-parasite communities. Here, we modeled the virulence
 evolution of two coinfecting parasites in a host population in which
 parasites interacted through cross immunity, immune suppression,
 immunopathology, or spite. We show (1) that these within-host interactions
 have different effects on virulence evolution when all parasites interact
 with each other in the same way vs. when coinfecting parasites have unique
 interaction strategies, (2) that all of these interactions cause the
 evolution of lower virulence in some hosts, and higher virulence in other
 hosts, depending on the hosts infection status, and (3) that for cross
 immunity and spite, whether parasites increased or decreased the
 evolutionarily stable virulence in coinfected hosts depended on
 interaction strength. These results improve our understanding of virulence
 evolution in complex parasite communities, and show that virulence
 evolution must be understood at the community scale.
description: adaptive_dynamics_scriptSimulation to Find coevolutionary stable virulence strategies.ad.dyn_public.RAdaptive_dynamics_script_spiteSimulation to find coevolutionarily stable virulence strategies for spiteful parasites.ad.dyn_public_spite.R