cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0177398.10fu
title: SH0177398.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0177399.10fu
title: SH0177399.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.z8x35z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((75.42362 21.568211, 75.34810400000001 21.562635, 75.27446399999999 21.546044, 75.20452899999999 21.518851, 75.14003200000001 21.481731, 75.08257 21.435604, 75.03355999999999 21.381615, 74.99420499999999 21.321101, 74.965467 21.255558, 74.94804000000001 21.186605, 74.942341 21.115945, 74.948491 21.045317, 74.966323 20.97646, 74.995383 20.911065, 75.03494499999999 20.850738, 75.08402700000001 20.796956, 75.141418 20.751037, 75.205707 20.714104, 75.27531999999999 20.68706, 75.34855399999999 20.670564, 75.42362 20.665021, 75.49868600000001 20.670564, 75.57192000000001 20.68706, 75.641533 20.714104, 75.705822 20.751037, 75.76321299999999 20.796956, 75.81229500000001 20.850738, 75.851857 20.911065, 75.880917 20.97646, 75.898749 21.045317, 75.904899 21.115945, 75.89919999999999 21.186605, 75.881773 21.255558, 75.85303500000001 21.321101, 75.81368000000001 21.381615, 75.76467 21.435604, 75.70720799999999 21.481731, 75.64271100000001 21.518851, 75.572776 21.546044, 75.49913599999999 21.562635, 75.42362 21.568211))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001598-260108223611665/datasets/export for details.
DOI: 10.15468/4azyqk
title: A new species of Lepanthes (Orchidaceae: Pleurothallidinae) from northwestern Ecuador

description: This dataset contains the digitized treatments in Plazi based on the original journal article Baquero, Luis E. (2018): A new species of Lepanthes (Orchidaceae: Pleurothallidinae) from northwestern Ecuador. Phytotaxa 343 (1): 75-81, DOI: 10.11646/phytotaxa.343.1.7, URL: http://dx.doi.org/10.11646/phytotaxa.343.1.7AbstractA new species of Lepanthes form Ecuador, Lepanthes kayii, is described, illustrated and compared with other similar species. L. kayii is compared to the similar species L. saltatrix and is the latest discovered species from a group of species of this genus which share several unique features in flower and plant morphologies.
DOI: 10.6084/m9.figshare.30945239
title: <b>Untargeted Metabolomics Raw Data</b>

description: <b>Untargeted metabolomics raw data of intestinal contents in animal model experiments for the treatment of ulcerative colitis with recombinant engineered bacteria</b>
DOI: 10.6084/m9.figshare.30945239.v1
title: <b>Untargeted Metabolomics Raw Data</b>

description: <b>Untargeted metabolomics raw data of intestinal contents in animal model experiments for the treatment of ulcerative colitis with recombinant engineered bacteria</b>
DOI: 10.25574/csc2.stk.hrcfj2207197p454711_002
title: Chandra X-ray Observatory Stack hrcfJ2207197p454711_002

description: CSC uses combined (i.e. overlapping) Chandra observations for detecting X-ray sources. This allows the catalog to include significantly fainter sources than CSC 1.1. The set of overlapping observations that have been combined in this way is known as a "stack".
DOI: 10.15468/dl.suvqnt
title: Occurrence Download

description: A dataset containing 711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spodoptera litura (Fabricius, 1775)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is New Zealand"
 ]
}

 The dataset includes 711 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010800-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14795501
title: Dataset related to article: NEUROPHYSIOLOGICAL MARKERS OF MOTOR COMPENSATORY MECHANISMS IN EARLY PARKINSON'S DISEASE

description: anonymized clinical, demographic, dopamine transporter imaging and neurophysiological data of patients with early parkinson’s disease described in the manuscript 10.1093/brain/awae210
DOI: 10.5281/zenodo.14795500
title: Dataset related to article: NEUROPHYSIOLOGICAL MARKERS OF MOTOR COMPENSATORY MECHANISMS IN EARLY PARKINSON'S DISEASE

description: anonymized clinical, demographic, dopamine transporter imaging and neurophysiological data of patients with early parkinson’s disease described in the manuscript 10.1093/brain/awae210
DOI: 10.17632/zw4kstvxwp
title: Detecting trees near electric wires with Deep Learning

description: Urban images and scripts used to train and test a deep leaning framework architecture to classify images as having or not intersections between trees and overhead powerlines/wires.
DOI: 10.15468/dl.e363r2
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Ocotea quixos (Lam.) Kosterm. ex O.C.Schmidt"
 ]
}

 The dataset includes 50 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010801-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5683/sp2/jtiqdo
title: Four Component Radiation Data at Scotty Creek, NWT, Canada 2004-2019

description: This dataset includes data for the manuscript entitled, "Long-term climate-influenced land cover change in discontinuous permafrost peatland complexes”. This study combines extensive geomatics data with ground-based meteorological and hydrological measurements to inform a new conceptual model of landscape evolution that accounts for the observed patterns of permafrost thaw-induced landcover change, and provides a basis for predicting future changes. Included here are four component radiation data from four sites, each representing a stage of landscape evolution. Specifically, incoming shortwave, outgoing shortwave, incoming longwave, and outgoing longwave radiation were measured (W/m2) at 30-minute intervals beginning as early as 2004 and continuing through 2019. The four sites instrumented and included in this dataset are: a densely forested plateau site (2007-2019), a sparsely forested plateau site (2015-2018), an intermediate forested plateau site (2014-2019), and a wetland site with no forest cover (2004-2019). Details of instrumentation are included in the aforementioned manuscript.
description: ====DATA DICTIONARY====<br>
Station (Alphabetical) - Station Identification:<br> 
     Dense Plateau - a station on a densely forested plateau<br> 
     Sparse plateau - a station on a sparsely forested plateau<br> 
     Intermediate Plateau - a station on a plateau with intermediate forest density<br> 
     Wetland - a station in a wetland with no forest cover<br> 
Year - Date variable<br> 
Month - Date variable<br>
Day - Date variable<br>
K_In_Daily - Daily Incoming Shortwave Radiation measured in MJ/m2<br>
K_Out_Daily - Daily Outgoing Shortwave Radiation measured in MJ/m2<br>
L_In_Daily - Daily Incoming Longwave Radiation measured in MJ/m2<br>
L_Out_Daily - Daily Outgoing Longwave Radiation measured in MJ/m2<br>
Date - Date variable. Collected by instrument<br>
<br>
<br>
====VERSION LOG====<br>
1.0 - 20210616 - New, Published Dataset.<br>
DOI: 10.15468/dl.ptydjv
title: Occurrence Download

description: A dataset containing 115037 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boletus L."
 ]
}

 The dataset includes 115037 records from 594 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010792-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/fznsy378mz
title: Embedment Analysis of Lag Screw Connections in Timber Concrete Composite (TCC) Slab

description: Lag screw connections in timber-concrete composite (TCC) slabs are evaluated with respect to the embedment depth using push-out-shear tests. Nine different trials are performed on embedment depths of 5.08 cm, 7.0 cm, and 8.9 cm. The specimens are studied to observe the modes of failure, and to develop a good understanding of the effect of embedment depth on TCC slabs. Then, wood crushing fiber strength is evaluated at 6.6 cm and 7.0 cm embedment to analyze the wood fiber crushing load, yielding of lag screws, and modes of failure of lag screw. A study of the relationship observed between the embedment depth and shear capacity of TCC slabs demonstrated that there is a clear increase of shear strength between 5.08 cm and 7.0 cm, but no significant changes between 7.0 cm and 8.9 cm. The wood crushing fiber strength results showed that the experimental fiber strength can be as much as twice the theoretical values. Based on the study outcomes, it is strongly recommended that the penetration depth of the lag screw into the timber specimen should be at a minimum of 7.33d (d=diameter of the lag screw). Multiplying the diameter of the lag screw by this factor would provide the required embedment depth to resist the applied loads with lower deflection and displacement of the lag screws. Based on the work done in this research, TCC behavior could be governed by three constraint limits: Double bending of lag screws, bearing strength of concrete on lag screw, and wood crushing fiber strength. As the connection goes through each of these modes successively, each lag screw with an embedment of 7.0 cm could safely uphold loads of 12,704 N.
DOI: 10.17632/8y5rtnggky
title: Oligocene – Miocene contraction on the northeastern Tibetan Plateau: Insights From the evolution of intermontane basins in the West Qinling Belt 

description: Text S1 Demagnetization and tests
Text S2 Anisotropy of magnetic susceptibility (AMS) analyses
Text S3 Detrital Zircons U-Pb Ages test
Figures S1 Orthogonal (Zijderveld) vector plots of the representative thermal demagnetization behaviors of specimens from the Anhua section.
Figures S2 Equal-area plots of accepted ChRMs (185 sites) from the Anhua section in (a) geographic and (b) tilt-corrected coordinates.
Figures S3 AMS data. (a) Equal-area, lower-hemisphere projection of anisotropy of the maximum (blue squares), medium (green triangles) and minimum (pink circles) susceptibility axes in stratigraphic coordinates. (b) PJ–T (corrected degrees of anisotropy vs. shape parameter). (c) Flinn diagram.
Table S1. Main characteristics and interpretations of major sedimentary facies in this study.
Table S2. Fossils were discovered along the West Qinling Belt.
Table S3. Zircon U-Pb geochronological analyses.
Table S4. Quantitative comparison of age distributions for the Anhua basin (Z1&Z2; Z3&Z4).
DOI: 10.15468/dl.7aqpj8
title: Occurrence Download

description: A dataset containing 2239541 species occurrences available in GBIF matching the query:
{
 "StateProvince" : [
 "is Caldas"
 ]
}

 The dataset includes 2239541 records from 368 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010790-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/4b6v8ckg4p
title: Vertical Skeletal Changes After Extraction and Non-Extraction Orthodontic Treatment

description: Introduction: Based on the constant battle regarding the controversial topic of orthodontic extraction, this study aims to assess the changes in vertical dimensions of patients treated with premolar extractions compared to non-extraction orthodontic patients.
Methods: A prospective study was conducted on a sample of 60 patients (30 in the extraction group, 30 in the non-extraction group) that were recruited from Nov 2018 to July 2020. Eleven pre-treatment cephalometric measurements were recorded using WebCephTM and patients were followed-up until the completion of treatment to record post-treatment cephalometric measurements of the same variables. Intra-group and inter-group comparisons were done using paired t-test and two-sample independent t-test, respectively.
Results: The intra-group comparison revealed that in the extraction group, the vertical dimension was significantly increased post-treatment for four cephalometric measurements i.e., Mandibular Plane Angle (MPA) (p<0.05), Palatal Plane Angle (PPA) (p<0.05), Frankfort Mandibular Plane Angle (FMA) (p<0.05), and y-axis (p<0.05). In the comparison of the post-treatment values of the Extraction group with the Non-Extraction group, the mean differences of the post-treatment values for SN-GoGn angle (p=0.008), the total anterior (p=0.050) and lower anterior facial heights (p=0.011) were significantly higher while the jaraback ratio was significantly (p=0.006) lower in the extraction group as compared to the non-extraction group. 
Conclusion: There is a significant impact of orthodontic extraction in increasing the vertical dimension at the end of orthodontic treatment. The increase in vertical dimension is significantly higher in the extraction group as compared to the non-extraction group. 
Keywords: Vertical dimension, bicuspid, Malocclusion, Angle Class II / therapy*, cephalometry/methods
DOI: 10.15468/dl.pdjrjf
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Ophiocaryon nicolasii Aymard"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010802-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.g9wa6aj0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (622910 records)
DOI: 10.17632/rnnj49gfmh
title:  Morphological and Plant functional traits of seedling of Quercus woods  measured in Molise region (Italy)

description: These  data are referrerd to the seedlings of  three Quercus cerris woods, namely Selva di Castiglione (SC), Bosco della Ficora (BF) and Bosco di San Leo (BSL), developed in different lithological and physiographic conditions and subjected to different forestry practices in Molise region (Italy). The phenotypic parameters considered in this study were the stem and root length and the leaf area, whereas the plant functional traits (PFTs) were specific leaf area (SLA), leaf dry matter content (LDMC), leaf thickness (Lth) and chlorophyll content (CHL).  The measures are reffered to three leaves on each seedling.These numeric data can be analyzed with  basic statistical programs. These data can be compared with data collected in other sites.
DOI: 10.17632/ctj75wzr7g
title: Oligocene Northeastward Growth of the Tibetan Plateau: Insights from Intermontane Basins in the West Qinling Belt, NW China

description: Text S1 Demagnetization and tests
Text S2 Anisotropy of magnetic susceptibility (AMS) analyses
Text S3 Detrital Zircons U-Pb Ages test
Figures S1 Orthogonal (Zijderveld) vector plots of the representative thermal demagnetization behaviors of specimens from the Anhua section.
Figures S2 Equal-area plots of accepted ChRMs (185 sites) from the Anhua section in (a) geographic and (b) tilt-corrected coordinates.
Figures S3 AMS data. (a) Equal-area, lower-hemisphere projection of anisotropy of the maximum (blue squares), medium (green triangles) and minimum (pink circles) susceptibility axes in stratigraphic coordinates. (b) PJ–T (corrected degrees of anisotropy vs. shape parameter). (c) Flinn diagram.
Table S1. Main characteristics and interpretations of major sedimentary facies in this study.
Table S2. Fossils were discovered along the West Qinling Belt.
Table S3. Zircon U-Pb geochronological analyses.
Table S4. Quantitative comparison of age distributions for the Anhua basin (Z1&Z2; Z3&Z4).
DOI: 10.5281/zenodo.14740176
title: Data for publication: TRAPPIST-1 d Exo-Venus, Exo-Earth or Exo-Dead?

description: The files in this zip archive are data, scripts (javascript and MatLab) and associated output files in various formats that were used to generate the tables and plots in the paper: Way, M.J. (2025) ApJL "Trappist 1d: Exo-Venus, Exo-Earth or Exo-Dead?"

The DATA directory contains all of the ROCKE-3D NetCDF files that were parsed by the scripts in the top level directory.

The ACC, RSF, SOURCE and RUNDECK directories are explained in the top level README.txt file.

The files ending in pcl are javascript files that work with Panoply (https://www.giss.nasa.gov/tools/panoply/). You will first need to install Panoply, and a suitable java runtime library.

You will then need to unzip the file PanoplyCL-beta.zip and reference PanoplyCL.jar to run the pcl scripts as shown in the first few lines of each script. Of course the paths will have to change, e.g.To run 01_swcrf_toa_in_01_ANN34000-34999.aijTrappist1d_1bar_N2_C400_Arid.pcl you would run it in this manner:java -jar PanoplyCL.jar 01_swcrf_toa_in_01_ANN34000-34999.aijTrappist1d_1bar_N2_C400_Arid.pcl

While making sure that your path to the source NetCDF file in the pcl script is correct. In this case it is currently:var ncfile1 = panoply.openDataset ( "file:/Users/mway/GoogleD/papers/2024-Trappist1d/FIGURES/DATA/01_ANN34000-34999.aijTrappist1d_1bar_N2_C400_Arid.nc" );

So one would need to change this path: /Users/mway/GoogleD/papers/2024-Trappist1d/

In two cases we used PowerPoint to combine multiple figures and to make legible axes, legends, etc.That would be both Figures 2 and 3.

Fig2.pptx was built from the outputs from the pcl scripts discussed above along with the files ending in the name *colorbar.png

Fig3.pptx was built from two MatLab (Fig3A.m and Fig3B.m) generated files (Fig3A.jpg and Fig3B.jpg).

Table1.m is a MatLab script that roughly generates Table 1 from the paper. Some modest modificationswere made by hand in the LaTeX source when entered into the manuscript source LaTeX file.
DOI: 10.15468/dl.kazep2
title: Occurrence Download

description: A dataset containing 1502 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-84.45865334472495 8.312795239593608,-80.45865334472495 8.312795239593608,-80.45865334472495 12.312795239593608,-84.45865334472495 12.312795239593608,-84.45865334472495 8.312795239593608))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bothrops asper (Garman, 1883)"
 ]
}

 The dataset includes 1502 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010803-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14794379
title: N/A
DOI: 10.5281/zenodo.14794378
title: N/A
DOI: 10.5281/zenodo.14794530
title: N/A
DOI: 10.5281/zenodo.14008529
title: Comparative Genomics of Triturus Balanced Lethal System Version 1.0

description: This repository details the bioinformatic pipelines used to investigate the comparative genomics of the balanced lethal system found in Triturus newts




Linkage maps for Triturus and Lissotriton are available in the file: Triturus and Lissotriton Linkage Maps.xlsx




The sequences of all targets captured in the study are available in the file: triturusTargetsV1Oneliners_7139unique.fasta




The associate publication is available on BioRxiv: https://doi.org/10.1101/2024.10.29.620207




The raw data is available via NCBI: bioproject - PRJNA1175462




The study is broken into 6 sections (combined into the .zip file Triturus_Lethal_Evolution-1.00)  - each of which contains a detailed readme in its respective folder:


The following software was employed for this study:

Perl v3.38.0R v4.4BBtools v38.96Trimmomatic v0.39SAMtools v1.18GATK v4.5.0.0VCFtools v0.1.16BCFtools v1.18BLAST+ v2.14.1Lep-MAP3 v.0.5nQuire (cloned from commit 8975c94)
DOI: 10.5281/zenodo.14008530
title: Comparative Genomics of Triturus Balanced Lethal System Version 1.0

description: This repository details the bioinformatic pipelines used to investigate the comparative genomics of the balanced lethal system found in Triturus newts




Linkage maps for Triturus and Lissotriton are available in the file: Triturus and Lissotriton Linkage Maps.xlsx




The sequences of all targets captured in the study are available in the file: triturusTargetsV1Oneliners_7139unique.fasta




The associate publication is available on BioRxiv: https://doi.org/10.1101/2024.10.29.620207




The raw data is available via NCBI: bioproject - PRJNA1175462




The study is broken into 6 sections (combined into the .zip file Triturus_Lethal_Evolution-1.00)  - each of which contains a detailed readme in its respective folder:


The following software was employed for this study:

Perl v3.38.0R v4.4BBtools v38.96Trimmomatic v0.39SAMtools v1.18GATK v4.5.0.0VCFtools v0.1.16BCFtools v1.18BLAST+ v2.14.1Lep-MAP3 v.0.5nQuire (cloned from commit 8975c94)
DOI: 10.5281/zenodo.14795639
title: Dataset related to article: Pain related to MRgFUS: a merely minor transient adverse event?

description: Database of demographic, clinical, psychological and pain-related data of ET and PD patients treated with MRgFUS of the Vim
DOI: 10.5281/zenodo.14795640
title: Dataset related to article: Pain related to MRgFUS: a merely minor transient adverse event?

description: Database of demographic, clinical, psychological and pain-related data of ET and PD patients treated with MRgFUS of the Vim