cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.nd76c/1
title: Balistoid Bayesian consensus tree

description: Balistoid Bayesian consensus tree based upon the supermatrix also included in this data package
DOI: 10.5061/dryad.nd76c/2
title: Balistoid aligned supermatrix for 9 gene regions from the mitochondrial and nuclear genome

description: 12S = 1-79616S = 797-13404c4 = 1341-1851rag2 = 1852-2653bmp4 = 2654-3135rhod = 3136-3445cytB = 3446-4517rag1 = 4518-5894COI = 5895-6529
DOI: 10.5061/dryad.nd76c/3
title: Balistoid BEAST-derived divergence time tree
DOI: 10.5061/dryad.nh149/1
title: PCG-AA data set

description: The PCG-AA amino acid data set was used to infer the phylogenies presented in Figure 1. It contains 14,209 positions and was assembled from 69 proteins encoded in the chloroplast genomes of 73 green algae. The data set was prepared using Mesquite 3.04 and is in Nexus format.
DOI: 10.5061/dryad.nh149/2
title: PCG123RNA data set

description: The PCG123RNA nucleotide data set was used to generate the GC/AT-skew plots shown in Figure 2. It contains 48,172 positions and was assembled from 98 chloroplast genes of 73 green algae. The data set was prepared using Mesquite 3.04 and is in Nexus format. It comprises the sequences of 69 protein-coding genes (all three codon positions) as well as the sequences of 29 rRNA and tRNA genes.
DOI: 10.5061/dryad.nh149/3
title: PCG123degenRNA data set

description: The PCG123degenRNA nucleotide data set was used to infer the phylogenies presented in Figure 3 and the additional file 1. It contains 48,172 positions and was assembled from 98 chloroplast genes of 73 green algae. The data set was prepared using Mesquite 3.04 and is in Nexus format. It comprises the sequences of 69 protein-coding genes (all three codon positions) that were degenerated using the Degen1.pl script of Regier et al. (Nature 2010 463:1079-1083) as well as the sequences of 29 rRNA and tRNA genes.
DOI: 10.5061/dryad.nh149/4
title: PCG12RNA data set

description: The PCG12RNA nucleotide data set was used to infer the phylogenies presented in Figure 3 and the additional file 1. It contains 34,121 positions and was assembled from 98 chloroplast genes of 73 green algae. The data set was prepared using Mesquite 3.04 and is in Nexus format. It comprises the sequences of 69 protein-coding genes (first two codon positions) as well as the sequences of 29 rRNA and tRNA genes.
DOI: 10.5061/dryad.p2q52/1
title: Suppl_alns

description: This folder contains three alignments: 'AMAS_j2013.fas', 'FcC_j2013.fas', and 'Phyut_j2013.nex' concatenated respectively by AMAS, FASconCAT-G, and Phyutility.The 'summary.txt' file contains summaries of these three alignments, as calculated by AMAS, showing that they are identical.'FcC_info.xls' is the summary calculated on j2013 data set by FASconCAT-G.
DOI: 10.5061/dryad.tf7qr/27
title: Estimating the number of K from STRUCTURE results.

description: Graphical representation of Evanno’s ∆K (circles) and the mean marginal likelihood across K (diamonds) from each 10 replicated runs from K=5 to K=27.
DOI: 10.5061/dryad.tf7qr/28
title: Geographical distributions of M. helleri species group.

description: Geographical distributions of M. helleri species group. AT = Austria, CZ = Czech Republic, DE = Germany, IT = Italy.
DOI: 10.5061/dryad.tf7qr/29
title: Delimitation results of bPTP algorithm

description: Species delimitation results of the Bayesian Poisson tree processes (bPTP) algorithm. Values on branches are posterior delimitation probabilities.
DOI: 10.5061/dryad.tn3vp/1
title: Cover and richness in the experimental subplots

description: See Readme.doc
DOI: 10.5061/dryad.tn3vp/2
title: Cover and richness in the reference meadow transects

description: See Readme.doc
DOI: 10.5061/dryad.tn3vp/3
title: Burn severity in the burned suplots

description: See Readme.doc
DOI: 10.5061/dryad.tn3vp/4
title: List of species and their classification by habitat affinity

description: See Readme.doc
DOI: 10.5061/dryad.tn47c/1
title: MAF.tar
DOI: 10.5061/dryad.21qs5/1
title: tracked_data

description: Zip file containing the tracked data from each of the landing and falling sequences analyzed
DOI: 10.5061/dryad.21qs5/2
title: EulerAngles

description: Measured and Simulated Euler angles as a function of time for all 12 trials discussed in the manuscript
DOI: 10.5061/dryad.21qs5/3
title: minimal_simulation

description: MATLAB codes to perform minimal model simulations
DOI: 10.5061/dryad.21qs5/4
title: full_simulation

description: Python codes to perform full model simulations
DOI: 10.5061/dryad.2m6t6/1
title: Smith et al. Raw Data
DOI: 10.5061/dryad.30hd0/1
title: GrowthSurvivalFlowering

description: Primary data file for estimating growth, survival, and flowering. "Cell" refers to blocks at the monitoring site, and spatial heterogeneity was estimated from the random-effects variation among blocks. "toX" refers to the probability that a plant died in the following year, i.e. 1 = death, and 0 = survival. Growth was estimated as the relationship between "Leaves" and "LvsNxt." Flowering was estimated as the relationship between Flowers and Leaves in a particular year. "toF" refers to whether a plant flowered in the next year. I explored separate models for the probability of future flowering and # flowers as a function of size, conditioned on flowering, but did not include this in the final models.
DOI: 10.5061/dryad.41mk8/1
title: Species of coral reef fish considered in analysis

description: 470 species of highly visible fishes identified across five sites in Papua New Guinea (Kimbe, Bootless Bay, Mline, Madang, Bismarck) during the early 21st century, as well as those from holdings of the Museum of Victoria which were made in Bootless Bay from 1881-1889
DOI: 10.5061/dryad.4754j/10
title: SupFig1-3

description: Analyses and Scripts used to compute and generate results from SupFig1-3
DOI: 10.5061/dryad.4754j/11
title: SupFig4-6

description: Analyses and Scripts used to compute and generate results from SupFig4-6
DOI: 10.5061/dryad.4754j/12
title: Utilities

description: Matlab Scripts written and used for the analysis
DOI: 10.5061/dryad.4754j/6
title: PV_VC-80Data

description: Voltage-Clamp Data at -80mV for PV cells
DOI: 10.5061/dryad.4754j/7
title: PYR_IC

description: Current-Clamp Data for PYR cells
DOI: 10.5061/dryad.4754j/8
title: Fig1-4

description: Analyses and Scripts used to compute and generate results from Fig1-4
DOI: 10.5061/dryad.4754j/9
title: Fig5-6

description: Analyses and Scripts used to compute and generate results from Fig5-6
DOI: 10.5061/dryad.4cj58/1
title: cladogenesis-model-misspecification.analysis.2015-10-10.archipelago_a2a63ae.rev_99037f0+supplemental
DOI: 10.5061/dryad.4cj58/2
title: wallacea-supplemental-results.archipelago_2c8ab2d.rev_9bc2a6f
DOI: 10.5061/dryad.4t393/1
title: mite distributions by tree, month and site and climatic conditions by site and month

description: Mite distributions on rubber trees in Brazil. Mites organized by tree, month and site and climatic conditions by site and month.
DOI: 10.5061/dryad.562ft/1
title: Solberg et al 2016 BMC Evolutionary Biology

description: Survival and growth data for Atlantic salmon of farmed, hybrid and wild origin.
DOI: 10.5061/dryad.57t89/1
title: Genotype data for pair-wise relatedness estimates

description: This file contains the microsatellite genotype data required for the analyses of pair-wise relatedness between affected and functionally unaffected nuclear families. Pair-wise relatedness estimates were calculated in the program COANCESTRY v.1.0.1.5 (Wang 2011).
DOI: 10.5061/dryad.57t89/3
title: Brood size data

description: This file contains data required for the analyses of brood size in affected (where blind nestlings have been observed) and unaffected (where no blind nestlings have been observed) nuclear families, using both functionally unaffected families (defined in the main manuscript) or all unaffected families.
DOI: 10.5061/dryad.57t89/4
title: Dyadic maximum likelihood relatedness data

description: This file contains the dyadic maximum likelihood (DyadML) estimates of pair-wise relatedness between individuals from affected and functionally unaffected families.DyadML estimates were calculated in the program COANCESTRY v.1.0.1.5 (Wang 2011).
DOI: 10.5061/dryad.57t89/5
title: Standardized multi-locus heterozygosity data

description: This file contains the standardized multi-locus heterozygosity (sMLH) estimates of blind and non-blind individuals. sMLH was estimated using the program Genhet (Coulon 2010).
DOI: 10.5061/dryad.5rg72/2
title: RAZO

description: subset of 1 Razorbill behavioural data recorded with accelerometer tags.
DOI: 10.5061/dryad.7r368/1
title: Bear 12 loci_109 genotypes data_MT_02022016

description: Sheet 1- 12 loci_109 genotypes; sheet 2- 17 loci_18 genotypes
DOI: 10.5061/dryad.b54gp/12
title: Y2Files

description: Matlab Struct array of data for subject Y2. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/13
title: Y4Files

description: Matlab Struct array of data for subject Y4. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/14
title: Y5Files

description: Matlab Struct array of data for subject Y5. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/15
title: C1Files

description: Matlab Struct array of data for subject C1. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/16
title: C3Files

description: Matlab Struct array of data for subject C3. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/17
title: FTD2Files

description: Matlab Struct array of data for subject FTD2. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.c1k6q/1
title: Amazon area-floodplain plus open water

description: SMMR (Scanning Multichannel Microwave Radiometer) and river stage data were used to estimate the area flooded along the Amazon River and its tributaries at monthly intervals.  This file gives the monthly estimated floodplain area in square kilometers. The open water area is given separately in another attached file.See Figure 1 to define the river “reaches” (1-12) used to separate the data.
DOI: 10.5061/dryad.c1k6q/2
title: Amazon area-open water

description: SMMR (Scanning Multichannel Microwave Radiometer) and river stage data were used to estimate the area flooded along the Amazon River and its tributaries at monthly intervals. This file gives the monthly estimated open water area in square kilometers; this open water area is included in Amazon area-floodplain plus open water.csv. See Figure 1 to define the river “reaches” (1-12) used to separate the data.
DOI: 10.5061/dryad.c1k6q/3
title: Amazon tributary area- floodplain plus open water

description: SMMR (Scanning Multichannel Microwave Radiometer) and river stage data were used to estimate the area flooded along 3 major Amazon River tributaries (Jurua, Purus and Madeiras) at monthly intervals. This file gives the monthly estimated floodplain and open water area in square kilometers. See Figure 1 to define the river “reaches” (1-12) used to separate the data.
DOI: 10.5061/dryad.c1k6q/4
title: Amazon River stage data

description: Monthly Amazon River stage height (in meters) for 5 locations.
DOI: 10.5061/dryad.c1k6q/5
title: Amazon tributary stage data

description: Monthly river stage heights (in meters) for 3 major Amazon River tributaries: Jurua, Purus and Madeira.
DOI: 10.5061/dryad.d0753/1
title: Hold_your_breat_beetle_mites_data

description: Data
DOI: 10.5061/dryad.dj40r/2
title: Data__PollinatorLimitation

description: Data used to estimate pollinator limitation and pollinator dependency in fruit production, including the number of flowers, the number of fruits, and the proportional female reproductive success (ProportionalfRS) for the plants assigned to the three treatments "open pollination", "hand pollination" and "pollinator exclusion". Data listed in an Excel sheet.
DOI: 10.5061/dryad.dj40r/3
title: Data__PollinatorFamiliesPerH

description: Number of pollinator per hour in each population and on each date listed separately for each pollinator family/order calculated based on S6 Table. Data listed in an Excel sheet.
DOI: 10.5061/dryad.dj40r/4
title: Data__FloralTraitDifferences

description: Data used to analyse differences in floral traits between regions, populations and years, including the original floral trait values and the ln(x + 1) transformed values used for the statistical analyses. Data listed in an Excel sheet.
DOI: 10.5061/dryad.dj40r/5
title: Data__NoPollinators_PollinatorFamilyRichness

description: Number of pollinators and pollinator family richness per h in each population and on each date calculated based on S6 Table. Data listed in an Excel sheet.
DOI: 10.5061/dryad.dj40r/6
title: Data__PhenotypicSelectionGradients

description: Excel sheet listing the phenotypic selection gradients and standard errors (SE) shown in Fig 2.
DOI: 10.5061/dryad.dj40r/7
title: Data__ReproductiveSuccessDifferences

description: Data used to analyse differences in female reproductive success between regions and between populations, including the original data of the number of flowers, the number of fruits, and the proportional female reproductive success (ProportionalfRS) as well as the transformed data, which were used for the statistical analyses. Data listed in an Excel sheet.
DOI: 10.5061/dryad.dj40r/8
title: Data__HerbivoryDifferences

description: Data used to analyse differences in herbivory between regions and between populations, including the number of flowers eaten per plant and aphid load. Data listed in an Excel sheet.
DOI: 10.5061/dryad.gj5b7/1
title: Measurements of Japanese quail (Coturnix japonica) from an artificial selection experiment for relative egg size

description: Excel file with 4 sheets, containing data collected from replicated divergent artificial selection lines for relative egg size, created in a captive population of Japanese quail (Coturnix japonica) at the University of Zurich. The first sheet contains information about subsequent sheets. The second sheet contains data mean values for each generation, repeat and line combinations for all traits used in analysis. The third sheet contains data of dried egg components from the fourth generation of the selection lines.  The fourth sheet contains data of laying intervals from the fourth generation of the selection lines.
DOI: 10.5061/dryad.kg4mq/3
title: A.lugubris_ND4+cytb

description: Alignment of mtDNA genes (ND4+cytb)
DOI: 10.5061/dryad.kg4mq/4
title: A.lugubris_CXCR4_unphased

description: CXCR4 alignment
DOI: 10.5061/dryad.kg4mq/5
title: A.lugubris_KIAA2013_unphased

description: KIAA2013 alignment
DOI: 10.5061/dryad.kg4mq/6
title: A.lugubris_RAG2_unphased

description: RAG2 alignment
DOI: 10.5061/dryad.ks430/1
title: Bird parental sex role data set

description: Data used in the paper and its detailed references, provided in an Excel file. The descriptions of the variables are provided in the Methods of the paper.
DOI: 10.5061/dryad.ns141/1
title: Growth, feeding, and digestive efficiency
DOI: 10.5061/dryad.p36kh/1
title: Morphological measurements of all specimens
DOI: 10.5061/dryad.pm4m5/1
title: Leaf phenotype data

description: Data from all genotypes from all three species including measures of leaf succulence, cross sectional data, and stomatal densities. See second tab for information on units.
DOI: 10.5061/dryad.pm4m5/2
title: Raw cross section data

description: Data collected from cross section replicates from all three species and all genotypes.
DOI: 10.5061/dryad.pm4m5/3
title: LiCOR 6400XT data

description: Gas exchange, etc data from all species for all days/timespoints and all experimental months (July and Oct 2014, Feb 2015). First five tabs are all data from a given day in an experiment, followed by tabs for species specific and genotype specific values.
DOI: 10.5061/dryad.pm4m5/4
title: Titratable acidity

description: Titratable acidity values (and raw pH values where measured) for all samples, all species.
DOI: 10.5061/dryad.r43k1.1
title: Data from: Altitudinal clinal variation in wing form in African Drosophila melanogaster: one cline or many?
DOI: 10.5061/dryad.r43k1.2
title: Data from: Altitudinal clinal variation in wing form in African Drosophila melanogaster: one cline or many?
DOI: 10.5061/dryad.r43k1.2/1.2
title: Data&Scripts_PitchersPoolDworkin2012

description: Data files and analysis scripts are found in the .zip archive. For details, see the ReadMe.txt file.
DOI: 10.5061/dryad.r43k1.2/2.2
title: African_Wing_images
DOI: 10.5061/dryad.tn04d/1
title: AlleleFrequency_Data

description: This file contains the following information / 1st column: alleles at each locus / 2nd to 6th column: frequency of these alleles for each population / Population names are code as in Table 1 in the article; H refers to "hatcheries" and W to "wild"
DOI: 10.5061/dryad.vb14q/1
title: EganEtAl2015-DataForStatisticalAnalyses

description: This Excel file contains the data we used to statistically analyze differences in paternity and sex ratios between individuals in the monandrous vs. polyandrous treatments.
DOI: 10.5061/dryad.vb14q/2
title: EganEtAl2015-PaternityGenotypeData

description: This Excel file contains the paternity and genotyping data for offspring in the monandrous vs. polyandrous treatments.
DOI: 10.5061/dryad.1h7gr/1
title: Drosophila subobscura karyotypes

description: Data on D. subobscura karyotypes from Mt. Avala. Jun-July 2014
DOI: 10.5061/dryad.1h7gr/2
title: Drosophila subobscura polymorphism

description: Data on Drosophila subobscura polymorphism for the whole chromosomal set. Data are from Mt. Avala, Serbia.
DOI: 10.5061/dryad.1jc33/1
title: Fischer et al. Carebara phragmotica ML tree file

description: This file contains the ML tree, generated with the alignment file and the described methods.
DOI: 10.5061/dryad.1jc33/2
title: Fischer_et al_Carebara phragmotica_alignment

description: This file contains the full alignment used to generate the ML tree.
DOI: 10.5061/dryad.1jc33/3
title: Carebara specimens collection data + extraction codes

description: This file contains all relevant identification and collection data as well as CASENT and DNA extractions codes.
DOI: 10.5061/dryad.24f64/1
title: DRYAD Taylor et al. 2015 Behav Ecol

description: Data on female remating behaviour in D. pseudoobscura from North America that were raised and mated and different temperatures.
DOI: 10.5061/dryad.25277/1
title: C++ and R code

description: You'll find the C++ code to simulate the evolutionary dynamics of mimetic organisms, and the R code used to analyse the outputs (format : .csv) of the simulations.
DOI: 10.5061/dryad.2h1q2/1
title: Individual networks of resource use from five animal populations

description: The dataset includes five interaction networks from three animal species. The data comprises qualitative information on individual patterns of resource use from each animal species. Individuals are depicted in rows and resources in columns. Pinaroloxias inornata (Passeriformes, Thraupidae) is a finch from the Coco Island, Costa Rica. This data was originally published by Werner and Sherry (1987). The Pinaroloxias network comprised 21 sampled individuals that used 7 different feeding strategies to acquire resources. Feeding strategies are described in the spreadsheet. The second and third sheets comprise information on feeding interaction from the marine snail Nucella emarginata (Neogastropoda, Muricidae) from two different localities in central California. These two data sets were originally published by West (1986). In site A, 20 individuals were sampled and consumed 7 resources. In site B, 31 individuals were sampled and consumed 3 resources. The fourth and fifth sheets describe the feeding interactions from two populations of the marine snail Vasula melones from Panama. These dataset was originally published by West (1988). In site A, 42 individuals were sampled and consumed 8 resources, whereas in site B, 21 individuals were sampled and consumed 14 resources. Resources are described within each spreadsheet. For further information regarding data collection from any of the study systems we refer readers to the original articles.References: Werner, T. K. and Sherry, T. W. 1987. Behavioral feeding specialization in Pinaroloxias inornata, the “Darwin’s finch” of Cocos Island, Costa Rica. – Proceedings of the  National Academy of Sciences 84: 5506–5510; West, L. 1986. Interindividual Variation in Prey Selection by the Snail Nucella (= Thais) Emarginata. - Ecology 67: 798; West, L. 1988. Prey Selection by the Tropical Snail Thais Melones: A Study of Interindividual Variation. - Ecology 69: 1839;
DOI: 10.5061/dryad.30hd0/2
title: recruit size

description: Size of new recruits, estimated from the number of leaves per plant. "Include" refers to whether plants were included in the analysis in the Journal of Ecology 2015 paper. A few plants were excluded because I was less confident that they were really new recruits; one was very large and the others were at locations that had had flowers in the past, even though there had not been any recent leaves. It is also likely that some of the new recruits in the 2nd year of the study in high-numbered cells were ones that we had missed in the first year of monitoring.
DOI: 10.5061/dryad.30hd0/3
title: Recruits.per.plot

description: Total number of new recruits and total number of flowers per plot.  Used to estimate the relationship between flower and seedling production.  In high-numbered plots, some of the new recruits in the 2nd year were probably plants that we did not notice in the first year.  (Monitoring in the first year took longer than expected, and I think some plants had senesced by the time we reached these high-numbered plots.)
DOI: 10.5061/dryad.35hq4/1
title: data_subject1

description: data subject 1
DOI: 10.5061/dryad.35hq4/2
title: data_subject2

description: data subject 2
DOI: 10.5061/dryad.35hq4/3
title: data_subject3

description: data subject 3
DOI: 10.5061/dryad.35hq4/4
title: data_subject4

description: data subject 4
DOI: 10.5061/dryad.3n2d5/1
title: Figure 1
DOI: 10.5061/dryad.3n2d5/2
title: Figure S1
DOI: 10.5061/dryad.3n2d5/3
title: Figure S2
DOI: 10.5061/dryad.3sq33/1
title: Ptilotus data input files

description: Data files for STRUCTURE, adegenet, and RDA analyses. Pop file accompanies the adegenet file. An ecological file with geographic localities accompanies the RDA allele frequency file.
DOI: 10.5061/dryad.4754j/13
title: ReadMe

description: Information File describing each of the above files and how to use the scripts correctly
DOI: 10.5061/dryad.4cj58/3
title: wallacea-birds-9104e5a.tar
DOI: 10.5061/dryad.4cj58/4
title: wallacea-birds-9104e5a.results.tar
DOI: 10.5061/dryad.4cj58/5
title: performance_2015-03-17.archipelago_54fef83.rev_f49101c
DOI: 10.5061/dryad.4cj58/6
title: robustness_2015-03-19.archipelago_b198966.rev_908f161
DOI: 10.5061/dryad.4cj58/7
title: archipelago-validation-59d10e4.tar