cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3611375_d8
title: Additional file 6 of Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

description: Uniprot identifiers for lentivirus proteins in HIV1-human interactome analysis. (CSV 0.803 kb)
DOI: 10.6084/m9.figshare.c.3611408_d9
title: Additional file 4: Table S2. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: SNP discovery between Mo17and B73. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3611414_d3
title: Additional file 12: of 
                     De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing

description: Analysis of protein domains in the unigenes: Distribution of protein families/domains among the genes identified from the transcriptome. The twenty most abundant families are presented with their respective family size. (TIFF 2785 kb)
DOI: 10.6084/m9.figshare.c.3611414_d4
title: Additional file 9: of 
                     De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing

description: Gene Ontology classification of the identified unigenes: Gene ontology (GO) term was assigned to each gene based on the annotation and were summarized into three main GO categories (biological process, cellular component, molecular function) while only the top 10 sub categories are presented in individual pie charts. (TIFF 1286 kb)
DOI: 10.6084/m9.figshare.c.3611408_d10
title: Additional file 20: Table S12. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: The gene list for flowering time and plant height traits which collected from previous work (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3611414_d5
title: Additional file 10: of 
                     De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing

description: COG functional classification of the unigenes: The functional characteristic assigned to the unigenes through homology against NCBI COG database and their classification among the 25 categories. (TIFF 3364 kb)
DOI: 10.6084/m9.figshare.c.3611408_d12
title: Additional file 14: Table S8. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: Genome wide QTL identification between IBM Syn4 and Syn10 populations. (XLSX 118 kb)
DOI: 10.6084/m9.figshare.c.3611429_d1
title: Additional file 7: Table S2. of Effect of room temperature transport vials on DNA quality and phylogenetic composition of faecal microbiota of elderly adults and infants

description: Subject details for each member in the study. Subjects 50, 51, 53, 54 were not part of the main study but were used for comparison of storage methods (Fig.Â 4). (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3611429_d2
title: Additional file 8: Table S3. of Effect of room temperature transport vials on DNA quality and phylogenetic composition of faecal microbiota of elderly adults and infants

description: Primers and barcode sequences used in the study. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3611408_d14
title: Additional file 7: Table S5. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

description: Summary of production and alignment for 280 IBM Syn10 lines. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3611414_d9
title: Additional file 11: of 
                     De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing

description: KOG analysis of the identified unigenes. (XLS 1321 kb)
DOI: 10.6084/m9.figshare.c.3611465_d1
title: Additional file 4: of The highly expressed 5’isomiR of hsa-miR-140-3p contributes to the tumor-suppressive effects of miR-140 by reducing breast cancer proliferation and migration

description: Genes deregulated by hsa-miR-140-3p, 5’isomiR-140-3p or both in both MCF10A and MDA-MB-231 cells. This table contains the genes which are downregulated in both cell lines by either hsa-miR-140-3p, 5’isomiR-140-3p or both by at least 35 % and with a significant corrected p-value. These genes are summarized in the Venn diagram in Fig. 2a. In addition, the genes that are upregulated in both cell lines by at least 65 % and with a significant corrected p-value by either has-miR-140-3p, 5’isomiR-140-3p or both are also listed in this table. Values are reported as log2 fold changes and Benjamini-Hochberg corrected p-values. (XLS 74 kb)
DOI: 10.6084/m9.figshare.c.3611465_d2
title: Additional file 1: of The highly expressed 5’isomiR of hsa-miR-140-3p contributes to the tumor-suppressive effects of miR-140 by reducing breast cancer proliferation and migration

description: miRNA seq dataset used to identify highly abundant miRNAs that have abundant 5’isomiRs. (XLSX 3320 kb)
DOI: 10.6084/m9.figshare.c.3611438_d6
title: Additional file 6: of Dynamic changes of tumor gene expression during repeated pressurized intraperitoneal aerosol chemotherapy (PIPAC) in women with peritoneal cancer

description: Raw data (clinical and qPCR data). (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3611465_d4
title: Additional file 3: of The highly expressed 5’isomiR of hsa-miR-140-3p contributes to the tumor-suppressive effects of miR-140 by reducing breast cancer proliferation and migration

description: Relative abundance of 3’isomiRs of miR-140-3p and 5’isomiR-140-3p in the TCGA breast cancer patient cohort. The table lists the genomic coordinates, the notation of the isomiR and the average expression of each individual form (in rpm). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3611480_d5
title: Additional file 4: Table S1. of Intra-individual changes in DNA methylation not mediated by cell-type composition are correlated with aging during childhood

description: EpiTYPER results. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3611480_d6
title: Additional file 6: Table S2. of Intra-individual changes in DNA methylation not mediated by cell-type composition are correlated with aging during childhood

description: EpiTYPER primers. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.c.3611528_d2
title: Additional file 2: Table S1 – S13. of Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources

description: Lists of colour-associated SNPs obtained for each pairwise comparison and association analyses; genic and genotypic differentiation tests; pairwise Fst estimates among dorsal colour phenotypes; SNP correlation value (r2) in linkage disequilibrium analyses; Genome size estimates; Assembly statistics for genome and transcriptome; and lists of blast results. (XLSX 159 kb)
DOI: 10.6084/m9.figshare.c.3611561_d1
title: Additional file 1 of A structured overview of trends and technologies used in dynamic hand orthoses

description: An Excel spreadsheet which contains obtained information from all devices and categorization into the presented framework. (XLSX 143 kb)
DOI: 10.15468/dl.trm5d8
title: Occurrence Download

description: A dataset containing 3887 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is MEX.25.18_2"
 ]
}

 The dataset includes 3887 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032740-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3611597_d3
title: Additional file 7: Table S1. of Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems

description: List of Bifidobacterium longum representatives. An .xls document with a list of all B. longum representatives that were used in the comparative analysis. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3611585_d6
title: Additional file 1: of Mapping the genomic mosaic of two â  Afro-Boliviansâ   from the isolated Yungas valleys

description: Population datasets used in the present study. (XLS 66 kb)
DOI: 10.6084/m9.figshare.c.3611609_d2
title: Additional file 2: Table S1. of A sensitive bacterial-growth-based test reveals how intestinal Bacteroides meet their porphyrin requirement

description: Heme-PPIX-Screen detection of pure heme or in biological samples. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3611585_d7
title: Additional file 7: of Mapping the genomic mosaic of two ‘Afro-Bolivians’ from the isolated Yungas valleys

description: Ancestry memberships as computed using the unsupervised clustering algorithm from ADMIXTURE and a large dataset representing main sub-continental African regions and the Tocaña, for an optimum value of K = 12. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3611597_d4
title: Additional file 8: Table S2. of Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems

description: Primers used in this study. An .xls document with a list of primer used in this study and sequences of restriction sites are indicated in bold text. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3611633_d1
title: MOESM1 of No filters, no fridges: a method for preservation of water samples for eDNA analysis

description: Additional file 1. Sample ID and treatment with measured DNA concentration (qPCR) and days of degradation.
DOI: 10.6084/m9.figshare.c.3611630_d1
title: Additional file 1: of A herbivore-induced plant volatile interferes with host plant and mate location in moths through suppression of olfactory signalling pathways

description: Test statistics of responses of individual glomeruli to (a) volatile cotton mimic and (b) single components. Statistical tests: linear mixed-effect model. Myr: Î˛-myrcene; Oci: (E)-Î˛-ocimene; Lim: (R)-(+)-limonene; HexAc: (Z)-3-hexenyl acetate; Non: nonanal. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3611630_d2
title: Additional file 2: of A herbivore-induced plant volatile interferes with host plant and mate location in moths through suppression of olfactory signalling pathways

description: Quantification of volatile compounds used in wind tunnel assays and in the headspace of stimulus pipettes. Values are mean ± SE. No significant difference was found between Mix-5 and Mix-5:DMNT, and DMNT alone and DMNT within Mix-5:DMNT (d.dev = 0.645, df = 5, P = 0.596, n = 15). Myr: β-myrcene; Oci: (E)-β-ocimene; Lim: (R)-(+)-limonene; HexAc: (Z)-3-hexenyl acetate; Non: nonanal. (XLSX 54 kb)
DOI: 10.15468/dl.x6s64b
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tantillita lintoni (Smith, 1940)"
 ]
}

 The dataset includes 59 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032741-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3611654_d7
title: Additional file 6: of High-density linkage map construction and QTL analysis for earliness-related traits in Gossypium hirsutum L

description: Detailed information of the 247 QTLs for the six cotton earliness-related traits from the RIL population. Stable or major QTLs are marked in yellow. (XLS 84Â kb)
DOI: 10.6084/m9.figshare.c.3611648_d7
title: Additional file 8: Table S6. of Coordinated regulation of hepatic and adipose tissue transcriptomes by the oral administration of an amino acid mixture simulating the larval saliva of Vespa species

description: The list of BAT genes showing significant enrichment in the GO-terms located at the bottom of the hierarchy. The list of BAT genes showing significant enrichment in the GO-terms located at the bottom of the hierarchy. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3611651_d10
title: Additional file 9: Table S8. of Effects of sleep and wake on astrocytes: clues from molecular and ultrastructural studies

description: Raw astrocytic EM measurements in S, SD, CSR, and W. (XLS 243Â kb)
DOI: 10.6084/m9.figshare.c.3611654_d9
title: Additional file 10: of High-density linkage map construction and QTL analysis for earliness-related traits in Gossypium hirsutum L

description: Genes annotated between Marker25958 and Marker25963. (XLS 65Â kb)
DOI: 10.6084/m9.figshare.c.3611654_d10
title: Additional file 4: of High-density linkage map construction and QTL analysis for earliness-related traits in Gossypium hirsutum L

description: Phenotypic distribution for the six traits of the parents and the RIL population. FBP: flowering to boll-opening period; PH: plant height; FT: flowering timing; WGP: whole growth period; NFFB: node of the first fruiting branch; HNFFB: height of the NFFB. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3611654_d11
title: Additional file 2: of High-density linkage map construction and QTL analysis for earliness-related traits in Gossypium hirsutum L

description: Genotypes of the 6,295 polymorphic SNPs between the parents and SNP polymorphisms on each chromosome. (XLSX 221Â kb)
DOI: 10.6084/m9.figshare.c.3611669_d1
title: Additional file 2: of Regenerate bone stimulation following limb lengthening: a meta-analysis

description: Regenerate Bone Data: Pooled Data from Literature; Contains data from studies included in the analysis, including number of patients, mean age, bone segments lengthened, indications for lengthening, average distraction distance, and mean healing index. (XLSX 56Â kb)
DOI: 10.6084/m9.figshare.c.3611654_d13
title: Additional file 14: of High-density linkage map construction and QTL analysis for earliness-related traits in Gossypium hirsutum L

description: SSR locus positions on the genetic map and common markers between our map and the references. (XLS 40Â kb)
DOI: 10.6084/m9.figshare.c.3611690_d2
title: Additional file 2: of A multidimensional education program at substance dependence treatment centers improves patient knowledge and hepatitis C care

description: This file contains the raw data for the variables presented in this manuscript. (XLSX 238ย�kb)
DOI: 10.6084/m9.figshare.c.3611678_d4
title: Additional file 3: of Polygenic sex determination in the cichlid fish Astatotilapia burtoni

description: Association results of sex with RAD markers in two families. (XLSX 653 kb)
DOI: 10.6084/m9.figshare.c.3611678_d5
title: Additional file 6: of Polygenic sex determination in the cichlid fish Astatotilapia burtoni

description: SSR marker data at LG13 and LG5-14 for 25 families. (XLSX 145 kb)
DOI: 10.6084/m9.figshare.c.3611678_d6
title: Additional file 8: of Polygenic sex determination in the cichlid fish Astatotilapia burtoni

description: Gene annotations for scaffolds on LG13 and LG5-14 associated with sex. (XLSX 440 kb)
DOI: 10.6084/m9.figshare.c.3611684_d3
title: Additional file 4: of Interaction network of tobacco etch potyvirus NIa protein with the host proteome during infection

description: TEV NIa (VPg and NIaPro)-host interaction network constructed in this work. This file also contains the experimental A. thaliana protein interactome. (XLSX 393 kb)
DOI: 10.6084/m9.figshare.c.3611678_d7
title: Additional file 7: of Polygenic sex determination in the cichlid fish Astatotilapia burtoni

description: SSR marker data at LG13 and LG5-14 for Family 19, with inferred Y haplotype and offspring sex genotypes. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3611678_d8
title: Additional file 5: of Polygenic sex determination in the cichlid fish Astatotilapia burtoni

description: Expanded summary table of association of genetic markers with sex in families, including genetic markers used. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3611684_d6
title: Additional file 3: of Interaction network of tobacco etch potyvirus NIa protein with the host proteome during infection

description: Refined lists of A. thaliana single genes targeted by TEV VPg and NIaPro domains of NIa during infection, respectively. Note that 67 elements are common to both lists (full-length NIa targets). The file also contains the list of the gene ontology (GO) terms significantly over-represented in the global list of NIa targets. (XLSX 95 kb)
DOI: 10.6084/m9.figshare.c.3611678_d9
title: Additional file 9: of Polygenic sex determination in the cichlid fish Astatotilapia burtoni

description: Primer sequence and scaffold location for SSR markers used. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3611774_d1
title: Additional file 1: Table S1. of Maximum basal FSH predicts reproductive outcome better than cycle-specific basal FSH levels: waiting for a â  better" month conveys limited retrieval benefits

description: Clinical parameters for patients with and without a history of FSH elevation. Cycle data were categorized by presence or absence of elevated current FSH, Max FSH or PMax FSH (&gt;13 mIU/mL) at the time of the cycle and stratified by age group. Incomplete (cancelled) cycles were excluded. Number of cycles with data for each parameter were noted. P-value comparisons were calculated between the elevated and non-elevated groups by t-test. Significance was noted as *** (p&lt;0.001), ** (p&lt;0.01) or * (p&lt;0.05). (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3611777_d1
title: Additional file 4: of Rare intronic variants of TCF7L2 arising by selective sweeps in an indigenous population from Mexico

description: Primer used to sequencing of TCF7L2 gene exons. (TXT 3.24 kb)
DOI: 10.6084/m9.figshare.c.3611780_d2
title: Additional file 2: Table S1. of The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1

description: Description of the differential expression analysis for all genes detected in the study and for each pairwise comparison. All values correspond to DESeq2 computations. The last column is.common.DE details whether the gene was found differentially expressed (DE) in both edgeR and DESeq2 analyses. FvM: females vs males, PvM: proestrus vs males, DvM: diestrus vs males, PvD: proestrus vs diestrus, padj: false discovery rate. (CSV 4867 kb)
DOI: 10.6084/m9.figshare.c.3611759_d4
title: Additional file 9: Table S5. of Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population

description: Differentially expressed genes in bodies. Table includes all genes surviving a genomewide FDR threshold of 5 % in at least one contrast. The data is taken directly from the “gene_exp.diff” Cuffdiff output file, and simply trimmed to remove data for those genes failing to reach genomewide significance (q
DOI: 10.6084/m9.figshare.c.3611780_d3
title: Additional file 14: Table S7. of The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1

description: Report of the full results of the functional annotation clustering analysis performed on the genes differentially expressed in proestrus vs diestrus with a known regulation by estrogens or progestins. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3611780_d4
title: Additional file 17: Table S9. of The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1

description: Description of all the PCR primers used in this study [97â  104]. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3611759_d6
title: Additional file 1: Table S1. of Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population

description: Median lifespan measurements for all DSPR RILs tested. The stock code for each line is provided in the “RIL” column, the median lifespan for mated females in hours is presented in “MedLifespanHrs”, and the “Block” column represents the experimental block (1–4) the line was assayed in. (TXT 15 kb)
DOI: 10.6084/m9.figshare.c.3611759_d12
title: Additional file 7: Table S4. of Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population

description: Aging candidate genes extracted from FlyBase. The “FBgn”, “CG”, “GeneName”, and “Symbol” columns provide details on the gene ID. The “CytologicalLocation”, “Chr”, “PosMin_R6”, and “PosMax_R6” provide the position of the gene (R6 refers to release 6 of the D. melanogaster reference annotation), and “Strand” provides the orientation of the gene in the genome. The final “VocabCode” column includes a multiple digit code indicating which controlled vocabulary (CV) search term(s) the gene is associated with (see Additional file 6 for the codes); For instance, “179” in this column means the gene is associated with the CV terms “aging”, “premature aging”, and “short lived”. (TXT 44 kb)
DOI: 10.6084/m9.figshare.c.3611780_d11
title: Additional file 8: Table S4. of The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1

description: Summary of the differential exon usage analysis for each pairwise comparison. FvM: females vs males, PvM: proestrus vs males, DvM: diestrus vs males, PvD: proestrus vs diestrus. (XLSX 36690 kb)
DOI: 10.6084/m9.figshare.c.3611789_d8
title: Additional file 7: Table S1. of Metazoans of redoxcline sediments in Mediterranean deep-sea hypersaline anoxic basins

description: From the supplemental images of loriciferans, which can be found at the Woods Hole Open Access Server (WHOAS) at http://dx.doi.org/ 10.1575/1912/7550 . Mapping files linking sample IDs (deep-sea hypersaline anoxic basin and habitat) to sequence IDs found at https://trace.ddbj.nig.ac.jp/DRASearch/study?acc=SRP049010 . (XLS 6 kb)
DOI: 10.6084/m9.figshare.c.3611780_d13
title: Additional file 13: Table S6. of The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1

description: Report of the full results of the transcription factor enrichment analysis performed using the enrichR tool on the DEG in each pairwise comparison. (XLSX 117 kb)
DOI: 10.6084/m9.figshare.c.3611780_d14
title: Additional file 4: Table S2. of The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1

description: Summary of all statistical values for the real-time PCR and western blotting data presented in Additional file 3: Figure S2. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3611759_d15
title: Additional file 15: Table S7. of Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population

description: RNAseq candidates within mapped QTL. The “QTL” column refers to the five QTL mapped in this study (see Table 1), and “FBgn”, “GeneSymbol”, “Cytological”, “Position_R6”, all give information on the gene. The “RNAseq_Expt” column states which study the gene was found to be differentially expressed in, “Contrast” gives the statistical test in which the gene was identified, and “ExpressionResult” gives the direction of the expression change. The “AgingCandidate” column states whether the gene is a known aging gene (see Table 2), and the “RNAseqOverlap” column gives the number of array-based expression studies identifying the gene as showing an age-related change in gene expression. (TXT 5 kb)
DOI: 10.6084/m9.figshare.c.3611780_d15
title: Additional file 6: Table S3. of The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1

description: Summary of the functional annotation clustering analysis in each pairwise comparison. (XLSX 149 kb)