cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc29hnm3
title: CCDC 2130215: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hnn4
title: CCDC 2130216: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hnp5
title: CCDC 2130217: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hnq6
title: CCDC 2130218: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hnr7
title: CCDC 2130219: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hns8
title: CCDC 2130220: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hnzg
title: CCDC 2130226: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hp0j
title: CCDC 2130227: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hp2l
title: CCDC 2130229: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hp3m
title: CCDC 2130230: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hp4n
title: CCDC 2130231: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hp5p
title: CCDC 2130232: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hp6q
title: CCDC 2130233: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hp7r
title: CCDC 2130234: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29hp8s
title: CCDC 2130235: Experimental Crystal Structure Determination

description: Related Article: Jianbo Song, Roman Pallach, Louis Frentzel‐Beyme, Pascal Kolodzeiski, Gregor Kieslich, Pia Vervoorts, Claire L. Hobday, Sebastian Henke|2022|Angew.Chem.,Int.Ed.|61|e202117565|doi:10.1002/anie.202117565
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/aa3ce300394decf1fd5f85681aa9d256
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 12 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-12 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.17637/rh.24856305
title: Aethionema arabicum dimorphic seed trait resetting during transition to seedlings

description: The transitioning from germinating seeds to emerging seedlings is one of the most vulnerable plant life cycle stages. Heteromorphic diaspores (seed and fruit dispersal units) are an adaptive bet-hedging strategy to cope with spatiotemporally variable environments. While the roles and mechanisms of seedling traits have been studied in monomorphic species which produce one type of diaspore, very little is known about seedlings in heteromorphic species. Using the dimorphic diaspore model<i> </i><i>Aethionema arabicum</i> (Brassicaceae) we identified contrasting mechanisms in the germination responses to different temperatures of the mucilaginous seeds (M<sup>+</sup> seed morphs), the dispersed indehiscent fruits (IND fruit morphs), and the bare non-mucilaginous M<sup>-</sup> seeds obtained from IND fruits by pericarp (fruit coat) removal. What follows the completion of germination is the pre-emergence seedling growth phase which we investigated here by comparative growth assays of early seedlings derived from the M<sup>+</sup> seeds, bare M<sup>-</sup> seeds, and IND fruits. The dimorphic seedlings derived from M<sup>+</sup> and M<sup>-</sup> seeds did not differ in their responses to ambient temperature, water potential and salinity. The phenotype of seedlings derived from IND fruits differed in that they had bent hypocotyls and their shoot and root growth was slower, but the biomechanical hypocotyl properties of 15-day old seedlings did not differ. Comparison of the transcriptomes of the natural dimorphic diaspores, M<sup>+</sup> seeds and IND fruits, identified 2,682 differentially expressed genes (DEGs) during late germination. During the subsequent 3 days of seedling pre-emergence growth the number of DEGs reduced 10-fold to 277 root DEGs and 16-fold to 164 shoot DEGs. Among the DEGs in early seedlings were hormonal regulators, in particular for auxin, ethylene and gibberellins. Further to this, DEGs for water and ion transporter, nitrate transporter and assimilation enzymes, and cell wall remodelling protein genes encoding enzymes targeting xyloglucan and pectin. We conclude that the transcriptomes of seedlings derived from the dimorphic diaspores, M<sup>+</sup> seeds and IND fruits, undergo transcriptional resetting during post-germination pre-emergence growth transitioning phase from germinated diaspores to growing seedlings.
DOI: 10.17637/rh.24856305.v1
title: Aethionema arabicum dimorphic seed trait resetting during transition to seedlings

description: The transitioning from germinating seeds to emerging seedlings is one of the most vulnerable plant life cycle stages. Heteromorphic diaspores (seed and fruit dispersal units) are an adaptive bet-hedging strategy to cope with spatiotemporally variable environments. While the roles and mechanisms of seedling traits have been studied in monomorphic species which produce one type of diaspore, very little is known about seedlings in heteromorphic species. Using the dimorphic diaspore model<i> </i><i>Aethionema arabicum</i> (Brassicaceae) we identified contrasting mechanisms in the germination responses to different temperatures of the mucilaginous seeds (M<sup>+</sup> seed morphs), the dispersed indehiscent fruits (IND fruit morphs), and the bare non-mucilaginous M<sup>-</sup> seeds obtained from IND fruits by pericarp (fruit coat) removal. What follows the completion of germination is the pre-emergence seedling growth phase which we investigated here by comparative growth assays of early seedlings derived from the M<sup>+</sup> seeds, bare M<sup>-</sup> seeds, and IND fruits. The dimorphic seedlings derived from M<sup>+</sup> and M<sup>-</sup> seeds did not differ in their responses to ambient temperature, water potential and salinity. The phenotype of seedlings derived from IND fruits differed in that they had bent hypocotyls and their shoot and root growth was slower, but the biomechanical hypocotyl properties of 15-day old seedlings did not differ. Comparison of the transcriptomes of the natural dimorphic diaspores, M<sup>+</sup> seeds and IND fruits, identified 2,682 differentially expressed genes (DEGs) during late germination. During the subsequent 3 days of seedling pre-emergence growth the number of DEGs reduced 10-fold to 277 root DEGs and 16-fold to 164 shoot DEGs. Among the DEGs in early seedlings were hormonal regulators, in particular for auxin, ethylene and gibberellins. Further to this, DEGs for water and ion transporter, nitrate transporter and assimilation enzymes, and cell wall remodelling protein genes encoding enzymes targeting xyloglucan and pectin. We conclude that the transcriptomes of seedlings derived from the dimorphic diaspores, M<sup>+</sup> seeds and IND fruits, undergo transcriptional resetting during post-germination pre-emergence growth transitioning phase from germinated diaspores to growing seedlings.
DOI: 10.17637/rh.24856305.v2
title: Aethionema arabicum dimorphic seed trait resetting during transition to seedlings

description: The transitioning from germinating seeds to emerging seedlings is one of the most vulnerable plant life cycle stages. Heteromorphic diaspores (seed and fruit dispersal units) are an adaptive bet-hedging strategy to cope with spatiotemporally variable environments. While the roles and mechanisms of seedling traits have been studied in monomorphic species which produce one type of diaspore, very little is known about seedlings in heteromorphic species. Using the dimorphic diaspore model<i> </i><i>Aethionema arabicum</i> (Brassicaceae) we identified contrasting mechanisms in the germination responses to different temperatures of the mucilaginous seeds (M<sup>+</sup> seed morphs), the dispersed indehiscent fruits (IND fruit morphs), and the bare non-mucilaginous M<sup>-</sup> seeds obtained from IND fruits by pericarp (fruit coat) removal. What follows the completion of germination is the pre-emergence seedling growth phase which we investigated here by comparative growth assays of early seedlings derived from the M<sup>+</sup> seeds, bare M<sup>-</sup> seeds, and IND fruits. The dimorphic seedlings derived from M<sup>+</sup> and M<sup>-</sup> seeds did not differ in their responses to ambient temperature, water potential and salinity. The phenotype of seedlings derived from IND fruits differed in that they had bent hypocotyls and their shoot and root growth was slower, but the biomechanical hypocotyl properties of 15-day old seedlings did not differ. Comparison of the transcriptomes of the natural dimorphic diaspores, M<sup>+</sup> seeds and IND fruits, identified 2,682 differentially expressed genes (DEGs) during late germination. During the subsequent 3 days of seedling pre-emergence growth the number of DEGs reduced 10-fold to 277 root DEGs and 16-fold to 164 shoot DEGs. Among the DEGs in early seedlings were hormonal regulators, in particular for auxin, ethylene and gibberellins. Further to this, DEGs for water and ion transporter, nitrate transporter and assimilation enzymes, and cell wall remodelling protein genes encoding enzymes targeting xyloglucan and pectin. We conclude that the transcriptomes of seedlings derived from the dimorphic diaspores, M<sup>+</sup> seeds and IND fruits, undergo transcriptional resetting during post-germination pre-emergence growth transitioning phase from germinated diaspores to growing seedlings.
DOI: 10.6073/pasta/3374ff41024d99396aa8063ca026f205
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 12 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-12 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.5281/zenodo.10393055
title: Changes in an alpine plant-pollinator network over 40 years

description: Code and data for submission: "
DOI: 10.5281/zenodo.10393056
title: Changes in an alpine plant-pollinator network over 40 years

description: Code and data for submission: "
DOI: 10.5281/zenodo.10476949
title: BetaBuddy: An automated end-to-end computer vision pipeline for analysis of calcium fluorescence dynamics in β-cells (DATASET)
DOI: 10.5281/zenodo.10476948
title: BetaBuddy: An automated end-to-end computer vision pipeline for analysis of calcium fluorescence dynamics in β-cells (DATASET)
DOI: 10.6084/m9.figshare.24891714
title: Supplemental Files

description: Supplementary Files for manuscript. <b>Supplementary Table S1. List of abbreviations used in manuscript. </b><b>S</b><b>upplementary Figure S1. Fiber characteristics of skeletal muscle biopsies from COCOA-PAD trial.</b> <b>A-C) </b>Change in average myofiber cross-sectional area (CSA) of Type I <b>(A)</b>, Type IIa <b>(B)</b>, and Type IIa/x <b>(C)</b> fibers from baseline to 6-month follow-up in PLA and COCOA groups. D-F) Change in fiber type frequency, % of total fibers that are Type I <b>(D)</b>, Type IIa <b>(E)</b>, or Type IIa/x <b>(F)</b>. <b>G)</b> Change in the proportion of Type I fibers (%) with central nuclei. Difference between groups tested using an independent t-test, n=5 in PLA, n=9 in COCOA, ns: not significant. <b>Supplementary Figure S2. Correlations between fiber characteristics, muscle measures, and walking performance from COCOA-PAD trial. </b><b>A-B) </b>Association between the fold change in HO-1 levels <b>(A) </b>or NQO1 levels <b>(B)</b> with the change in Type II fibers with central nuclei. <b>(C-D)</b> The association between the fold change in HO-1 levels <b>(C)</b> or NQO1 levels<b> (D) </b>with the fold change in UQCRC2 levels. <b>E)</b> Association between the fold change in UQCRC2 levels and the change in 6-minute walk distance (m) from baseline to 6-month follow-up. Association tested by Pearson correlation. COCOA points shown in green and PLA shown in gray. Line of best fit, R<sup>2</sup>, and p-values shown. <b>Supplementary Figure S3. PAD serum treatment and EPI treatment effects on myotubes. A)</b> OCR trace over time after injections of indicated mitochondrial respiration modulators in Control myotubes [CON, standard 2% horse serum (HS)], 10% pooled PAD serum-treated myotubes (PAD serum), and 10% pooled healthy participant serum-treated myotubes (Healthy serum). <b>B) </b>Quantification of maximal OCR (FCCP-stimulated), normalized to protein concentration. <b>C) </b>Hydrogen peroxide production, assessed by AmR fluorescence. Data expressed as fold-regulation relative to CON myotubes. Experiments are averages of 4 technical replicates. <b>D)</b> Representative Western blot of p-Nrf2 and Nrf2 levels in myotube lysates treated with increasing doses of EPI or sulforaphane (SFN) as a positive control. <b>E)</b> Quantification of p-Nrf2 levels after densitometric analysis of the levels of each sample normalized to corresponding Nrf2 (p-Nrf2/Nrf2), expressed as fold-regulation relative to CON (untreated, 0 μM). Difference between groups (n=2-3/group) tested using a one-way ANOVA, results of pairwise post-hoc analyses (Tukey’s) displayed as *p&lt;0.05, **p&lt;0.01, ***p&lt;0.001. <br>