cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4299200
title: Development of Highly Sensitive, Automatized and Portable Whole-Cell Hg Biosensor Based on Environmentally Relevant Microorganisms

description: Whole-cell biosensors are still the method of choice when measuring bioavailable mercury, though their implementation in environmental monitoring is limited by low sensitivity, lack of portability and use of environmentally irrelevant bacteria. To address these issues, we have engineered a new luminescence-based whole-cell mercury biosensor, as part of a standalone fully automated portable device. Our method allows the incorporation of any environmentally relevant bacterial cell, which has been modified to translate the concentration of biologically available mercury into a dose-dependent luminescent signal. The use of environmentally relevant bacteria, <i>Pseudomonas putida</i> for fresh waters and <i>Aliivibrio fischeri</i> for salt waters, demonstrated that environmental samples will not exhibit toxic effects, when appropriate microorganisms are implemented. Additionally, by assuring efficient aeration of the medium and thus sufficient oxygenation of sensor cells during generation of the luminescence signal, we obtained a clear dose-dependent response and observed an increased sensitivity of the method up to 100 times (the limit of detection [LOD] was determined to be as low as ∼10 ng L<sup>−1</sup>). Finally, using our automated device, we demonstrated that in the environment the biologically available fraction of mercury can (1) represent an important part of the total mercury content (40–70%) and (2) it can correspond to the changes of total mercury content, which results in higher bioavailability of mercury closer to the source of mercury contamination.
DOI: 10.6084/m9.figshare.4299200.v2
title: Development of Highly Sensitive, Automatized and Portable Whole-Cell Hg Biosensor Based on Environmentally Relevant Microorganisms

description: Whole-cell biosensors are still the method of choice when measuring bioavailable mercury, though their implementation in environmental monitoring is limited by low sensitivity, lack of portability and use of environmentally irrelevant bacteria. To address these issues, we have engineered a new luminescence-based whole-cell mercury biosensor, as part of a standalone fully automated portable device. Our method allows the incorporation of any environmentally relevant bacterial cell, which has been modified to translate the concentration of biologically available mercury into a dose-dependent luminescent signal. The use of environmentally relevant bacteria, <i>Pseudomonas putida</i> for fresh waters and <i>Aliivibrio fischeri</i> for salt waters, demonstrated that environmental samples will not exhibit toxic effects, when appropriate microorganisms are implemented. Additionally, by assuring efficient aeration of the medium and thus sufficient oxygenation of sensor cells during generation of the luminescence signal, we obtained a clear dose-dependent response and observed an increased sensitivity of the method up to 100 times (the limit of detection [LOD] was determined to be as low as ∼10 ng L<sup>−1</sup>). Finally, using our automated device, we demonstrated that in the environment the biologically available fraction of mercury can (1) represent an important part of the total mercury content (40–70%) and (2) it can correspond to the changes of total mercury content, which results in higher bioavailability of mercury closer to the source of mercury contamination.
DOI: 10.6084/m9.figshare.4299200.v1
title: Development of highly sensitive, automatized and portable whole-cell Hg biosensor based on environmentally relevant microorganisms

description: Whole-cell biosensors are still the method of choice when measuring bioavailable mercury, though their implementation in environmental monitoring is limited by low sensitivity, lack of portability and use of environmentally irrelevant bacteria. To address these issues, we have engineered a new luminescence-based whole-cell mercury biosensor, as part of a standalone fully automated portable device. Our method allows the incorporation of any environmentally relevant bacterial cell, which has been modified to translate the concentration of biologically available mercury into a dose-dependent luminescent signal. The use of environmentally relevant bacteria, <i>Pseudomonas putida</i> for fresh waters and <i>Allivibrio fischeri</i> for salt waters, demonstrated that environmental samples will not exhibit toxic effects, when appropriate microorganisms are implemented. Additionally, by assuring efficient aeration of the medium and thus sufficient oxygenation of sensor cells during generation of the luminescence signal, we obtained a clear dose dependent response and observed an increased sensitivity of the method up to 100-times (the LOD was determined to be as low as ∼10 ng L<sup>−1</sup>). Finally, using our automated device, we demonstrated that in the environment the biologically available fraction of mercury can (<i>i</i>) represent an important part of the total mercury content (40–70 %) and (<i>ii</i>) it can correspond to the changes of total mercury content, which results in higher bioavailability of mercury closer to the source of mercury contamination.
DOI: 10.6084/m9.figshare.4296476
title: Wikipedia Article Section Headings

description: This project contains data sets consisting of all page headings (article section titles) for the English, French, German, Italian, and Spanish Wikipedias for article pages with at least one heading. For more information and documentation, see the link in the references section below.
DOI: 10.6084/m9.figshare.4296476.v1
title: Wikipedia Article Section Headings

description: This project contains data sets consisting of all page headings (article section titles) for the English, French, German, Italian, and Spanish Wikipedias for article pages with at least one heading. For more information and documentation, see the link in the references section below.
DOI: 10.6084/m9.figshare.4296383
title: Selection Methods and Procedure for Evaluation of LED Roadway Luminaires

description: This study evaluated the existing light emitting diode (LED) roadway luminaires available in the U.S. market for field implementation to displace the high intensity discharge (HID) luminaires. Four methods were proposed for selection of qualified LED luminaires, including, in order, specification evaluation, computer simulation, implementation cost-effectiveness analysis, and field mock-up tests. A total of 148 LED roadway luminaires were collected and evaluated over 28 factors. Those luminaires were tested in computer simulations for optimized roadway layout and preferred lighting performance in compliance with the codes and standards. An approved products list (APL) of 88 luminaires was selected for potential field implementation. A lighting economics calculator was developed for cost-effectiveness analysis on their implementation. Guidance on the field mock-up tests was also proposed. The present study then evaluated the selection methods in an assumed replacement project of 1000 luminaires in Kansas. In this project, the APL was shortened to a short list of 13 standard pole and three high-mast LED luminaires based on their efficacy, year released, availability of manufacturer sales representatives, and simple payback time period for roadway implementation. The short-list products were compared to their equivalent existing HID luminaire counterparts for cost–benefit analysis that revealed significant 12-year life cycle cost savings with an average payback time period less than 3 years. The present study then evaluated the four selection methods in their effective procedure for future uses in the selection of qualified replacement LED luminaires with expected adjustments and timely update.
DOI: 10.6084/m9.figshare.4296383.v1
title: Selection Methods and Procedure for Evaluation of LED Roadway Luminaires

description: This study evaluated the existing light emitting diode (LED) roadway luminaires available in the U.S. market for field implementation to displace the high intensity discharge (HID) luminaires. Four methods were proposed for selection of qualified LED luminaires, including, in order, specification evaluation, computer simulation, implementation cost-effectiveness analysis, and field mock-up tests. A total of 148 LED roadway luminaires were collected and evaluated over 28 factors. Those luminaires were tested in computer simulations for optimized roadway layout and preferred lighting performance in compliance with the codes and standards. An approved products list (APL) of 88 luminaires was selected for potential field implementation. A lighting economics calculator was developed for cost-effectiveness analysis on their implementation. Guidance on the field mock-up tests was also proposed. The present study then evaluated the selection methods in an assumed replacement project of 1000 luminaires in Kansas. In this project, the APL was shortened to a short list of 13 standard pole and three high-mast LED luminaires based on their efficacy, year released, availability of manufacturer sales representatives, and simple payback time period for roadway implementation. The short-list products were compared to their equivalent existing HID luminaire counterparts for cost–benefit analysis that revealed significant 12-year life cycle cost savings with an average payback time period less than 3 years. The present study then evaluated the four selection methods in their effective procedure for future uses in the selection of qualified replacement LED luminaires with expected adjustments and timely update.
DOI: 10.6084/m9.figshare.4296257
title: Super Quants Survival Guide

description: A practical guide to advanced social statistics, particularly advanced linear modeling
DOI: 10.6084/m9.figshare.4296227
title: Dataset for: Underlying mechanism of the cyclic migrating motor complex in <i>Suncus murinus</i>: a change in gastrointestinal pH is the key regulator

description: In the fasted gastrointestinal (GI) tract, a characteristic cyclical rhythmic migrating motor complex (MMC) occurs in an ultradian rhythm, at 90–120 min time intervals, in many species. However, the underlying mechanism directing this ultradian rhythmic MMC pattern is yet to be completely elucidated. Therefore, this study aimed to identify the possible causes or factors that involve in the occurrence of the fasting gastric contractions by using <i>Suncus murinus</i> a small model animal featuring almost the same rhythmic MMC as that found in humans and dogs. We observed that either intraduodenal infusion of saline at pH 8 evoked the strong gastric contraction or continuously lowering duodenal pH to 3-evoked gastric phase II-like and phase III-like contractions, and both strong contractions were essentially abolished by the intravenous administration of MA 2029 (motilin receptor antagonist) and D-Lys3-GHRP6 (ghrelin receptor antagonist) in a vagus-independent manner. Moreover, we observed that the prostaglandin E2-alpha (PGE2-α) and serotonin type 4 (5HT4) receptors play important roles as intermediate molecules in changes in GI pH and motilin release. These results suggest a clear insight mechanism that change in the duodenal pH to alkaline condition is an essential factor for stimulating the endogenous release of motilin and governs the fasting MMC in a vagus-independent manner. . Finally, we believe that the changes in duodenal pH triggered by flowing gastric acid and the release of duodenal bicarbonate through the involvement of PGE2-α and 5HT4 receptor are the key events in the occurrence of the MMC.
DOI: 10.6084/m9.figshare.4296227.v1
title: Dataset for: Underlying mechanism of the cyclic migrating motor complex in <i>Suncus murinus</i>: a change in gastrointestinal pH is the key regulator

description: In the fasted gastrointestinal (GI) tract, a characteristic cyclical rhythmic migrating motor complex (MMC) occurs in an ultradian rhythm, at 90–120 min time intervals, in many species. However, the underlying mechanism directing this ultradian rhythmic MMC pattern is yet to be completely elucidated. Therefore, this study aimed to identify the possible causes or factors that involve in the occurrence of the fasting gastric contractions by using <i>Suncus murinus</i> a small model animal featuring almost the same rhythmic MMC as that found in humans and dogs. We observed that either intraduodenal infusion of saline at pH 8 evoked the strong gastric contraction or continuously lowering duodenal pH to 3-evoked gastric phase II-like and phase III-like contractions, and both strong contractions were essentially abolished by the intravenous administration of MA 2029 (motilin receptor antagonist) and D-Lys3-GHRP6 (ghrelin receptor antagonist) in a vagus-independent manner. Moreover, we observed that the prostaglandin E2-alpha (PGE2-α) and serotonin type 4 (5HT4) receptors play important roles as intermediate molecules in changes in GI pH and motilin release. These results suggest a clear insight mechanism that change in the duodenal pH to alkaline condition is an essential factor for stimulating the endogenous release of motilin and governs the fasting MMC in a vagus-independent manner. . Finally, we believe that the changes in duodenal pH triggered by flowing gastric acid and the release of duodenal bicarbonate through the involvement of PGE2-α and 5HT4 receptor are the key events in the occurrence of the MMC.
DOI: 10.6084/m9.figshare.4296206
title: CBP_Argentina.rar

description: Data in the article "A massive experiment on choice blindness in political decisions: confidence, confabulation, and unconscious detection of self-deception"
DOI: 10.6084/m9.figshare.4296257.v2
title: Super Quants Survival Guide

description: A practical guide to advanced social statistics, particularly advanced linear modeling
DOI: 10.6084/m9.figshare.4296257.v4
title: Super Quants Survival Guide

description: A practical guide to advanced social statistics, particularly advanced linear modeling
DOI: 10.6084/m9.figshare.4296257.v3
title: Super Quants Survival Guide

description: A practical guide to advanced social statistics, particularly advanced linear modeling
DOI: 10.6084/m9.figshare.4295360
title: Earth Analytics course data: 2013 Colorado floods time series

description: This repo contains time series data that characterizes rainfall (precipitation), streamflow (discharge) and spatial locations of significant change found in Google Earth Imagery. These data are used in the Earth Analytics course taught at the University of Colorado - Boulder through Earth Lab by Leah Wasser. <br>
DOI: 10.6084/m9.figshare.4295585
title: Model climatologies accompanying "How uncertainty in field measurements of ice nucleating particles influences modeled cloud forcing"

description: These files are the annual mean climatologies for each simulation performed with the CESM-MARC for the manuscript, "How uncertainty in field measurements of ice nucleating particles influences modeled cloud forcing." Included are all the fields discussed in the manuscript, for both the present day and pre-industrial emissions scenarios.
DOI: 10.6084/m9.figshare.4295585.v1
title: Model climatologies accompanying "How uncertainty in field measurements of ice nucleating particles influences modeled cloud forcing"

description: These files are the annual mean climatologies for each simulation performed with the CESM-MARC for the manuscript, "How uncertainty in field measurements of ice nucleating particles influences modeled cloud forcing." Included are all the fields discussed in the manuscript, for both the present day and pre-industrial emissions scenarios.
DOI: 10.6084/m9.figshare.4295348
title: Corneal Confocal Microscopy is a rapid reproducible ophthalmic technique for quantifying corneal nerve abnormalities

description: Corneal confocal microscopy has been increasingly deployed in clinical research studies. However, the effect of image selection, repeatability and the number of images required to accurately quantify CCM images has not been addressed. Our study shows that implementing a standardized protocol to select CCM images results in high intra and inter-observer reproducibility corneal nerve quantification and 6 images are adequate for analysis
DOI: 10.6084/m9.figshare.4295360.v1
title: CO Flood 2013 - Classroom Lab

description: Data from the Boulder flood 2013.<br>
DOI: 10.6084/m9.figshare.4295348.v1
title: New draft item

description: Corneal confocal microscopy has been increasingly deployed in clinical research studies. However, the effect of image selection, repeatability and the number of images required to accurately quantify CCM images has not been addressed. Our study shows that implementing a standardized protocol to select CCM images results in high intra and inter-observer reproducibility corneal nerve quantification and 6 images are adequate for analysis
DOI: 10.6084/m9.figshare.4295360.v2
title: CO Flood 2013 - Classroom Lab

description: Data from the Boulder flood 2013.<br>
DOI: 10.6084/m9.figshare.4295324
title: Dehiscensicoridae fam. nov. (Insecta: Heteroptera: Pentatomomorpha) from the Upper Mesozoic of Northeast China

description: A new family of insects is described from the Lower Cretaceous Yixian Formation in western Liaoning Province, China. Dehiscensicoridae Du, Yao & Ren fam. nov. comprises five new genera and five new species: <i>Dehiscensicoris sanctus</i> Du, Yao & Ren gen. et sp. nov., <i>Pingquanicoris punctatus</i> Du, Yao & Ren gen. et sp. nov., <i>Changirostrus maculatus</i> Du, Yao & Ren gen. et sp. nov., <i>Crassiantenninus minutus</i> Du, Yao & Ren gen. et sp. nov. and <i>Minuticoris brunneus</i> Du, Yao & Ren gen. et sp. nov. A cladistic analysis based on a combination of fossil and extant morphological characters is used to hypothesize the phylogenetic status of the new family, allowing the reconstruction of the interfamily relationships within the Coreoidea (<i>sensu lato</i>) which were found to be: Pyrrhocoroidea + (Dehiscensicoridae fam. nov. + (Coreoidea + (Idiostoloidea + Lygaeoidea))). http://zoobank.org/urn:lsid:zoobank.org:pub:E501B670-AF36-408C-8B9D-466B330BA775
DOI: 10.6084/m9.figshare.4295324.v1
title: Dehiscensicoridae fam. nov. (Insecta: Heteroptera: Pentatomomorpha) from the Upper Mesozoic of Northeast China

description: A new family of insects is described from the Lower Cretaceous Yixian Formation in western Liaoning Province, China. Dehiscensicoridae Du, Yao & Ren fam. nov. comprises five new genera and five new species: <i>Dehiscensicoris sanctus</i> Du, Yao & Ren gen. et sp. nov., <i>Pingquanicoris punctatus</i> Du, Yao & Ren gen. et sp. nov., <i>Changirostrus maculatus</i> Du, Yao & Ren gen. et sp. nov., <i>Crassiantenninus minutus</i> Du, Yao & Ren gen. et sp. nov. and <i>Minuticoris brunneus</i> Du, Yao & Ren gen. et sp. nov. A cladistic analysis based on a combination of fossil and extant morphological characters is used to hypothesize the phylogenetic status of the new family, allowing the reconstruction of the interfamily relationships within the Coreoidea (<i>sensu lato</i>) which were found to be: Pyrrhocoroidea + (Dehiscensicoridae fam. nov. + (Coreoidea + (Idiostoloidea + Lygaeoidea))). http://zoobank.org/urn:lsid:zoobank.org:pub:E501B670-AF36-408C-8B9D-466B330BA775
DOI: 10.6084/m9.figshare.4295360.v3
title: CO Flood 2013 - Classroom Lab

description: Data from the Boulder flood 2013.<br>
DOI: 10.5281/zenodo.4013359
title: Dataset. Marcos de Feminicidio en la Prensa Mexicana

description: La presente Dataset corresponde a la codificación de 2,527 artículos de tres diarios de circulación nacional mexicanos del año 2014 a 2017. El objetivo de este trabajo es analizar la cobertura del Feminicidio en la prensa mexicana, utilizando la metodología de análisis de contenido cuantitativo para la extracción de Marcos Periodísticos Multimodales (Entman, 1993), la pregunta que se pretende contestar es ¿Cuáles son los aspectos que se destacan en las noticias de feminicidio? Medimos la atención mediática al tema (Hilgartner & Bosk, 1988) y se codificaron manualmente todos los artículos en que se informa feminicidio. Se extrajeron los elementos de los marcos: definición del problema y causas, representación de actores principales, evaluación moral, atribución de responsabilidad y tratamiento recomendado (Entman, 1993). Se codificaron varias categorías para cada elemento independientemente siguiendo la metodología de conglomerados (Matthes & Kohring, 2008), para obtener resultados que puedan ser comprobados por otros codificadores, de forma que se logra validez y confiabilidad en un estudio de profundidad.
description: Este Dataset corresponde a la tesis de Doctorado: Gutiérrez Aldrete, Mariana. (2020). El tratamiento del Feminicidio en Medios de Comunicación en México. Universidad Autónoma de Barcelona: Barcelona.
DOI: 10.5281/zenodo.4013358
title: Dataset. Marcos de Feminicidio en la Prensa Mexicana

description: La presente Dataset corresponde a la codificación de 2,527 artículos de tres diarios de circulación nacional mexicanos del año 2014 a 2017. El objetivo de este trabajo es analizar la cobertura del Feminicidio en la prensa mexicana, utilizando la metodología de análisis de contenido cuantitativo para la extracción de Marcos Periodísticos Multimodales (Entman, 1993), la pregunta que se pretende contestar es ¿Cuáles son los aspectos que se destacan en las noticias de feminicidio? Medimos la atención mediática al tema (Hilgartner & Bosk, 1988) y se codificaron manualmente todos los artículos en que se informa feminicidio. Se extrajeron los elementos de los marcos: definición del problema y causas, representación de actores principales, evaluación moral, atribución de responsabilidad y tratamiento recomendado (Entman, 1993). Se codificaron varias categorías para cada elemento independientemente siguiendo la metodología de conglomerados (Matthes & Kohring, 2008), para obtener resultados que puedan ser comprobados por otros codificadores, de forma que se logra validez y confiabilidad en un estudio de profundidad.
description: Este Dataset corresponde a la tesis de Doctorado: Gutiérrez Aldrete, Mariana. (2020). El tratamiento del Feminicidio en Medios de Comunicación en México. Universidad Autónoma de Barcelona: Barcelona.
DOI: 10.6084/m9.figshare.4295360.v4
title: CO Flood 2013 - Week 1 Classroom Lab

description: Data from the Boulder flood 2013.<br>
DOI: 10.6084/m9.figshare.4295360.v5
title: CO Flood 2013 - Week 1 Classroom Lab

description: Data from the Boulder flood 2013.<br>
DOI: 10.6084/m9.figshare.4295111
title: The role of air pollution in myocardial remodeling

description: Dataset regarding the datas from "The role of air pollution in myocardial remodeling"protocol. These data are related to the primary endpoint.<br><br>
DOI: 10.6084/m9.figshare.4295360.v6
title: CO Flood 2013 - Week 1 Classroom Lab

description: Data from the Boulder flood 2013.<br>
DOI: 10.6084/m9.figshare.4294880
title: Medina: KPP Fortran to CUDA source-to-source pre-processor

description: MIT Licence<br><br>KPP Fortran to CUDA source-to-source pre-processor: Each CPU process that offloads to GPU requires a chunk of the GPU VRAM memory, dependent on the number of species and reaction constants in the MECCA mechanism. The number of GPUs per node and VRAM memory available in each GPU dictates the total number of CPU cores that can run simultaneously.<br>
DOI: 10.6084/m9.figshare.4295360.v9
title: CO Flood 2013 - Weeks 1 & 2 data

description: Data from the Boulder flood 2013.<br>
DOI: 10.6084/m9.figshare.4295360.v10
title: Earth Analytics course data: 2013 Colorado floods time series

description: This repo contains time series data that characterizes rainfall (precipitation), streamflow (discharge) and spatial locations of significant change found in Google Earth Imagery. These data are used in the Earth Analytics course taught at the University of Colorado - Boulder through Earth Lab by Leah Wasser. <br>