cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3714226_d4.v1
title: Additional file 13: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M4. Annotation result of M4 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 671Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d3
title: Additional file 12: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M3. Annotation result of M3 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 1032Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d6.v1
title: Additional file 15: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M11. Annotation result of M11 performed in enrichR. Each tab of the file is the outcome of a gene set library enrichment analysis implemented in enrichR. (XLSX 433Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d4
title: Additional file 13: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M4. Annotation result of M4 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 671Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d5
title: Additional file 14: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M10. Annotation result of M10 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 350Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d6
title: Additional file 15: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M11. Annotation result of M11 performed in enrichR. Each tab of the file is the outcome of a gene set library enrichment analysis implemented in enrichR. (XLSX 433Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d8.v1
title: Additional file 17: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M15. Annotation result of M15 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 431Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d7.v1
title: Additional file 16: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M13. Annotation result of M13 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publication [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 216Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d9.v1
title: Additional file 18: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M16. Annotation result of M16 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 125Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d10.v1
title: Additional file 19: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M17. Annotation result of M17 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 412Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d7
title: Additional file 16: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M13. Annotation result of M13 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publication [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 216Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d8
title: Additional file 17: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M15. Annotation result of M15 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 431Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d11.v1
title: Additional file 1: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: RNA_quality_measurments. Table S2. contains RNA related quality measurements including A260, A280, 260/280, 260/230 and RNA integrity number (RIN). (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d9
title: Additional file 18: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M16. Annotation result of M16 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 125Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d11
title: Additional file 1: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: RNA_quality_measurments. Table S2. contains RNA related quality measurements including A260, A280, 260/280, 260/230 and RNA integrity number (RIN). (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d12.v1
title: Additional file 20: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M18. Annotation result of M18 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 72Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d10
title: Additional file 19: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M17. Annotation result of M17 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 412Â kb)
DOI: 10.6084/m9.figshare.c.3714226_d12
title: Additional file 20: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_enrichR_M18. Annotation result of M18 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 72Â kb)
DOI: 10.15468/dl.jp4y5v
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharhinus isodon (Müller & Henle, 1839)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 86 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038377-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3714916_d2.v1
title: Additional file 2: of Exploring the floristic diversity of tropical Africa

description: An R script used to compute Nielsen estimator from a matrix of samples-species. (R 808 bytes)
DOI: 10.6084/m9.figshare.c.3715003_d2
title: Additional file 2: of Influence of temperature fluctuations during cryopreservation on vital parameters, differentiation potential, and transgene expression of placental multipotent stromal cells

description: Microarray analysis. Gene regulation in the samples differentiated after cryopreservation procedures with constant temperatures and temperature fluctuations in comparison to the native cell differentiation. Genes with regulation from twofold to 10-fold. (XLSX 382 kb)
DOI: 10.6084/m9.figshare.c.3715015_d1.v1
title: Additional file 1: of Support for phosphoinositol 3 kinase and mTOR inhibitors as treatment for lupus using in-silico drug-repurposing analysis

description: presents information about quality control of the data, SLE signatures, and significant results obtained: Sheet 1 shows information about datasets including their GEO identifiers, the SLE state, the cell type, and the microarray platform for each, number of control and case samples, PubMed identifier, and date of publication; Sheet 2 shows results of the quality control based on the percentage of missing values and the number of significant genes in each dataset of SLE; Sheet 3 shows the signatures of each dataset used to query on Lincscloud, significant genes sorted by fold change in each signature; and Sheet 4 shows the lists of drugs and knock-in and knockdown genes with similarity scores, median of similarity scores across datasets, and significance values (XLSX 182 kb)
DOI: 10.6084/m9.figshare.c.3715033_d1
title: Additional file 1: of The prediction of a pathogenesis-related secretome of Puccinia helianthi through high-throughput transcriptome analysis

description: Dataset of 35286 ORFs of the Puccinia helianthi transcriptome (XLSX 4749 kb)
DOI: 10.6084/m9.figshare.c.3715033_d2.v1
title: Additional file 2: of The prediction of a pathogenesis-related secretome of Puccinia helianthi through high-throughput transcriptome analysis

description: Dataset of 908 putative secretory proteins (XLSX 129 kb)
DOI: 10.6084/m9.figshare.c.3715006_d3
title: Additional file 3: of Mathematical modelling and a systems science approach to describe the role of cytokines in the evolution of severe dengue

description: Validation Data. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3715033_d2
title: Additional file 2: of The prediction of a pathogenesis-related secretome of Puccinia helianthi through high-throughput transcriptome analysis

description: Dataset of 908 putative secretory proteins (XLSX 129 kb)
DOI: 10.6084/m9.figshare.c.3715039_d1
title: Additional file 1: TableS1. of The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity

description: SSR markers developed in this study from Peach v1.0. For each primer, the locus name, primer sequences, position in Peach v1.0 and v2.0, repeated motif, polymorphism in TxE (monomorphic, BIN or fully mapped) and location in genic or intergenic regions are reported. Table S2. SNP markers developed in this study from the resequencing of the CxA F1 parent. For each primer, the locus name, position in Peach v1.0 and v2.0, primer sequences, BIN position and location in genic or intergenic regions are reported. Table S3. Illumina short reads libraries. All libraries were sequenced as 2x250s using Illumina sequencing. Reads were filtered on quality, screening for reads that were predominantly simple sequence, and residual phix contamination. Table S4. TxE linkage map. For each locus, the genetic position in linkage groups and physical position in Peach v2.0 are reported. Only integrated markers are reported. Table S5. Sequenom SNP development and their efficiency with the SNP calling parameters used in this study. A posteriori efficiency was calculated using more stringent parameters as in Verde et al. 2013. Table S6. CxA linkage map. For each locus, the genetic position in linkage groups and physical position in Peach v2.0 are reported. Table S7. PxF linkage map. For each locus, the genetic position in linkage groups and physical position in Peach v2.0 are reported. Table S8. Linkage map of PxF F1 parent. For each locus, the genetic position in linkage groups and physical position in Peach v2.0 are reported. Table S9. Linkage map of PxF recurrent parent (IF7310828). For each locus, the genetic position in linkage groups and physical position in Peach v2.0 are reported. Table S10. Composition of the 8 Peach v2.0 pseudomolecules. Start and end of each scaffold, total scaffold length, scaffold denomination in v2.0 and in v1.0, v1.0 position of each v2.0 scaffold, length of the scaffold ends uncovered with markers and mapping and orientation information achieved with the linkage maps used in this study, are reported. Table S11. Linkage map of LG6 of MDxSD. For each locus, the genetic position (cM) in linkage groups and physical position in Peach v2.0 are reported. Table S12. Peach v2.0 assembly statistics (N/L) prior to the pseudomolecules build. Table S13. Peach v2.0 assembly statistics post chromosome-scale build. (XLSX 391Â kb)
DOI: 10.15468/dl.crfc2x
title: Occurrence Download

description: A dataset containing 21326 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharhinus limbatus (Müller & Henle, 1839)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 21326 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038378-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3646121_d1.v1
title: Additional file 1: Figure S1. of Aldehyde dehydrogenase activity plays a Key role in the aggressive phenotype of neuroblastoma

description: Stem cell markers are enriched during neurosphere culture. Figure S2. DEAB treatment is efficient to transitory inhibit ALDH activity. Figure S3. Illustration of the insertions/deletions in the different ALDH1A3 KO clones. Figure S4. ALDH1A3 KO has no impact on the percentage of ALDH+ cells. (ZIP 3370Â kb)
DOI: 10.6084/m9.figshare.c.3646121_d1
title: Additional file 1: Figure S1. of Aldehyde dehydrogenase activity plays a Key role in the aggressive phenotype of neuroblastoma

description: Stem cell markers are enriched during neurosphere culture. Figure S2. DEAB treatment is efficient to transitory inhibit ALDH activity. Figure S3. Illustration of the insertions/deletions in the different ALDH1A3 KO clones. Figure S4. ALDH1A3 KO has no impact on the percentage of ALDH+ cells. (ZIP 3370Â kb)
DOI: 10.6084/m9.figshare.c.3716059_d1
title: MOESM1 of Histone peptide microarray screen of chromo and Tudor domains defines new histone lysine methylation interactions

description: Additional file 1: Table S1. Protein domains screened by histone peptide microarray.
DOI: 10.6084/m9.figshare.c.3716059_d2
title: MOESM2 of Histone peptide microarray screen of chromo and Tudor domains defines new histone lysine methylation interactions

description: Additional file 2: Table S2. Histone peptide library used for peptide microarrays.