cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7369277.v1
title: Additional file 3: of Seedless mutant ‘Wuzi Ougan’ (Citrus suavissima Hort. ex Tanaka ‘seedless’) and the wild type were compared by iTRAQ-based quantitative proteomics and integratedly analyzed with transcriptome to improve understanding of male sterility

description: Table S3. GO term of DEPs. (XLS 127 kb)
DOI: 10.6084/m9.figshare.7369295
title: Additional file 4: of Seedless mutant ‘Wuzi Ougan’ (Citrus suavissima Hort. ex Tanaka ‘seedless’) and the wild type were compared by iTRAQ-based quantitative proteomics and integratedly analyzed with transcriptome to improve understanding of male sterility

description: Table S4. KEGG term of DEPs. (XLS 98 kb)
DOI: 10.6084/m9.figshare.7369295.v1
title: Additional file 4: of Seedless mutant ‘Wuzi Ougan’ (Citrus suavissima Hort. ex Tanaka ‘seedless’) and the wild type were compared by iTRAQ-based quantitative proteomics and integratedly analyzed with transcriptome to improve understanding of male sterility

description: Table S4. KEGG term of DEPs. (XLS 98 kb)
DOI: 10.6084/m9.figshare.7369256.v1
title: Additional file 2: of Seedless mutant ‘Wuzi Ougan’ (Citrus suavissima Hort. ex Tanaka ‘seedless’) and the wild type were compared by iTRAQ-based quantitative proteomics and integratedly analyzed with transcriptome to improve understanding of male sterility

description: Table S2. Annotated DEPs and their expression ratio (N/Y). “N” and “Y” indicate MT and WT, respectively. (XLS 181 kb)
DOI: 10.6084/m9.figshare.7369304
title: Additional file 5: of Seedless mutant ‘Wuzi Ougan’ (Citrus suavissima Hort. ex Tanaka ‘seedless’) and the wild type were compared by iTRAQ-based quantitative proteomics and integratedly analyzed with transcriptome to improve understanding of male sterility

description: Table S5. Integrated_Table_mRNA_protein_Anno. (XLSX 999 kb)
DOI: 10.6084/m9.figshare.7369343
title: Additional file 1: of Key factors identified by proteomic analysis in maize (Zea mays L.) seedlings’ response to long-term exposure to different phosphate levels

description: Figure S1. Phenotypic responses of QXN233 genotype to LP or HP condition. QXN233 grown under the different Pi-treated conditions for 10 days (a) via a vermiculite assay or for 20 days (b) via a hydroponic assay. Bar = 5 cm, Bar = 2 cm. Figure S2. Phenotypic responses of QXN233 genotype to LP or HP condition. QXN233 grown under the different Pi-treated conditions for 25 days (a) via a vermiculite assay. Bar = 10 cm. Table S1. Primers used in qRT-PCR. Table S2. Quantitative analyses of plant height and the width and length of the longest leaf in QXN233 after 30 days under 0 mM Pi or 3 mM Pi via vermiculite assay. Values represent means ± SEM of three replicates. Asterisks indicate a significant difference between the Pi-treated and control groups (LSD test, P &lt; 0.05). Table S3. DEPs of QXN233 identified under low or high Pi (LP or HP) compared with the normal condition via the proteomic analysis (Ratio |0 Pi or 3 Pi/Control| &gt; 1.2 and P &lt; 0.05). The red and green markers presented the upregulated and downregulated values of DEPs, respectively. Table S4. Dataset.xlsx. (ZIP 4300 kb)
DOI: 10.6084/m9.figshare.7369364
title: Additional file 1: of Two MYB transcription factors (CsMYB2 and CsMYB26) are involved in flavonoid biosynthesis in tea plant [Camellia sinensis (L.) O. Kuntze]

description: Putative cis-acting regulatory elements of CsMYB2, CsMYB26 and the structural genes involved in the flavonoid pathway. (XLS 33 kb)
DOI: 10.6084/m9.figshare.7369343.v1
title: Additional file 1: of Key factors identified by proteomic analysis in maize (Zea mays L.) seedlings’ response to long-term exposure to different phosphate levels

description: Figure S1. Phenotypic responses of QXN233 genotype to LP or HP condition. QXN233 grown under the different Pi-treated conditions for 10 days (a) via a vermiculite assay or for 20 days (b) via a hydroponic assay. Bar = 5 cm, Bar = 2 cm. Figure S2. Phenotypic responses of QXN233 genotype to LP or HP condition. QXN233 grown under the different Pi-treated conditions for 25 days (a) via a vermiculite assay. Bar = 10 cm. Table S1. Primers used in qRT-PCR. Table S2. Quantitative analyses of plant height and the width and length of the longest leaf in QXN233 after 30 days under 0 mM Pi or 3 mM Pi via vermiculite assay. Values represent means ± SEM of three replicates. Asterisks indicate a significant difference between the Pi-treated and control groups (LSD test, P &lt; 0.05). Table S3. DEPs of QXN233 identified under low or high Pi (LP or HP) compared with the normal condition via the proteomic analysis (Ratio |0 Pi or 3 Pi/Control| &gt; 1.2 and P &lt; 0.05). The red and green markers presented the upregulated and downregulated values of DEPs, respectively. Table S4. Dataset.xlsx. (ZIP 4300 kb)
DOI: 10.6084/m9.figshare.7369364.v1
title: Additional file 1: of Two MYB transcription factors (CsMYB2 and CsMYB26) are involved in flavonoid biosynthesis in tea plant [Camellia sinensis (L.) O. Kuntze]

description: Putative cis-acting regulatory elements of CsMYB2, CsMYB26 and the structural genes involved in the flavonoid pathway. (XLS 33 kb)
DOI: 10.6084/m9.figshare.24146668
title: Electronic supplementary material (ESM).zip from Genome-wide identification of ATP-binding cassette transporter B subfamily, focusing on its structure, evolution and rearrangement in ciliates

description: ATP-binding cassette subfamily B (ABCB) has been implicated in various essential functions such as multidrug resistance, auxin transport and heavy metal tolerance in animals and plants. However, their functions, the genomic distribution and the evolutionary history have not been characterized systematically in lower eukaryotes. As a lineage of highly specialized unicellular eukaryotes, ciliates have extremely diverse genomic features including nuclear dimorphism. To further understand the genomic structure and evolutionary history of this gene family, we investigated the ABCB gene subfamily in 11 ciliates. The results demonstrate that there is evidence of substantial gene duplication, which has occurred by different mechanisms in different species. These gene duplicates show consistent purifying selection, suggesting functional constraint, in all but one species, where positive selection may be acting to generate novel function. We also compare the gene structures in the micronuclear and macronuclear genomes and find no gene scrambling during genome rearrangement, despite the abundance of such scrambling in two of our focal species. These results lay the foundation for future analyses of the function of these genes and the mechanisms responsible for their evolution across diverse eukaryotic lineages.
DOI: 10.6084/m9.figshare.24146668.v1
title: Electronic supplementary material (ESM).zip from Genome-wide identification of ATP-binding cassette transporter B subfamily, focusing on its structure, evolution and rearrangement in ciliates

description: ATP-binding cassette subfamily B (ABCB) has been implicated in various essential functions such as multidrug resistance, auxin transport and heavy metal tolerance in animals and plants. However, their functions, the genomic distribution and the evolutionary history have not been characterized systematically in lower eukaryotes. As a lineage of highly specialized unicellular eukaryotes, ciliates have extremely diverse genomic features including nuclear dimorphism. To further understand the genomic structure and evolutionary history of this gene family, we investigated the ABCB gene subfamily in 11 ciliates. The results demonstrate that there is evidence of substantial gene duplication, which has occurred by different mechanisms in different species. These gene duplicates show consistent purifying selection, suggesting functional constraint, in all but one species, where positive selection may be acting to generate novel function. We also compare the gene structures in the micronuclear and macronuclear genomes and find no gene scrambling during genome rearrangement, despite the abundance of such scrambling in two of our focal species. These results lay the foundation for future analyses of the function of these genes and the mechanisms responsible for their evolution across diverse eukaryotic lineages.
DOI: 10.6084/m9.figshare.22573819
title: Effects of NPs on ecosystem function.zip

description:   
Although the presence of nanoplastics in aquatic and terrestrial ecosystems has received increasing attention, little is known about its potential effect on ecosystem processes and functions. Here, we evaluated if differentially surface charged polystyrene (PS) nanoplastics (PS-NH2 and PS-SO3H) exhibit distinct influences on microbial community structure, nitrogen removal processes (denitrification and anammox), emissions of greenhouse gases (CO2, CH4, and N2O) and ecosystem multifunctionality in soils with and without earthworms through a 42-days microcosm experiment. Our results indicated that nanoplastics significantly altered soil microbial community structure and potential functions, with more pronounced effects for positively charged than for negatively charged nanoplastics. Ecologically relevant concentration of nanoplastics (3 g kg−1) inhibited both soil denitrification and anammox rates, while environmentally realistic concentration of nanoplastics (0.3 g kg−1) decreased the denitrification rate and enhanced the anammox rate. The soil N2O flux was always inhibited 6‒51% by both types of nanoplastics, whereas emissions of CO2 and CH4 were enhanced by nanoplastics in most cases. Significantly, although N2O emissions were decreased by nanoplastics, the global warming potential of total greenhouse gases was increased 21‒75% by nanoplastics in soils without earthworms. Moreover, ecosystem multifunctionality was increased 4‒12% by 0.3 g kg−1 of nanoplastics but decreased 4‒11% by 3 g kg−1 of nanoplastics. Our findings provide the only evidence to date that the rapid increase of nanoplastics is altering not only ecosystem structure and processes but also ecosystem multifunctionality, and it may increase the emission of CO2 and CH4 and their global warming potential to some extent.
DOI: 10.17031/65c2003e8e0bb
title: CPR Pacific areas gelatinous plankton

description: CPR data for selected Pacific regions for gelatinous zooplankton records. Values indicate abundance, 0.001 indicates presence only (note Cnidaria tissue is only recorded as presence (0.001) or absence (0).
DOI: 10.6084/m9.figshare.7369484
title: Additional file 9: of Histone acetyltransferase CBP-related H3K23 acetylation contributes to courtship learning in Drosophila

description: Representative movies of H3WT, H3K23A, GFP RNAi and dCBP RNAi fly courtship learning. Videos were recorded during the initial and final 10 min of the 60 min training session. Video 1: H3WT flies exhibited courtship suppression after training. Video 2: H3K23A flies exhibited a reduction of courtship suppression and a high courtship index after training. Video 3: GFP RNAi flies exhibited normal courtship suppression after training. Video 4: dCBP RNAi flies exhibited less courtship suppression after training. (ZIP 25330 kb)
DOI: 10.6084/m9.figshare.7369484.v1
title: Additional file 9: of Histone acetyltransferase CBP-related H3K23 acetylation contributes to courtship learning in Drosophila

description: Representative movies of H3WT, H3K23A, GFP RNAi and dCBP RNAi fly courtship learning. Videos were recorded during the initial and final 10 min of the 60 min training session. Video 1: H3WT flies exhibited courtship suppression after training. Video 2: H3K23A flies exhibited a reduction of courtship suppression and a high courtship index after training. Video 3: GFP RNAi flies exhibited normal courtship suppression after training. Video 4: dCBP RNAi flies exhibited less courtship suppression after training. (ZIP 25330 kb)
DOI: 10.6084/m9.figshare.23622400
title: Supplementary material for 'Automatic pavement texture recognition using lightweight few-shot learning'

description: Texture is a crucial characteristic of road, closely related to its performance. The recognition of pavement texture is of great significance for road maintenance professionals to detect potential safety hazards and carry out necessary countermeasures. Although deep learning models have been applied for recognition, the scarcity of data has always been a limitation. To address this issue, this paper proposes a few-shot learning model based on the Siamese network for pavement texture recognition with a limited dataset. The model achieved 89.8% accuracy in a four-way five-shot task classifying the pavement textures of dense asphalt concrete, micro surface, open-graded friction course and stone matrix asphalt. To align with engineering practice, global average pooling (GAP) and one-dimensional convolution are implemented, creating lightweight models that save storage and training time. Comparative experiments show that the lightweight model with GAP implemented on dense layers and one-dimensional convolution on convolutional layers reduced storage volume by 94% and training time by 99%, despite a 2.9% decrease in classification accuracy. Moreover, the model with only GAP implemented on dense layers achieved the highest accuracy at 93.5%, while reducing storage volume and training time by 83% and 6%, respectively.This article is part of the theme issue 'Artificial intelligence in failure analysis of transportation infrastructure and materials'.
DOI: 10.6084/m9.figshare.23622400.v1
title: Supplementary material for 'Automatic pavement texture recognition using lightweight few-shot learning'

description: Texture is a crucial characteristic of road, closely related to its performance. The recognition of pavement texture is of great significance for road maintenance professionals to detect potential safety hazards and carry out necessary countermeasures. Although deep learning models have been applied for recognition, the scarcity of data has always been a limitation. To address this issue, this paper proposes a few-shot learning model based on the Siamese network for pavement texture recognition with a limited dataset. The model achieved 89.8% accuracy in a four-way five-shot task classifying the pavement textures of dense asphalt concrete, micro surface, open-graded friction course and stone matrix asphalt. To align with engineering practice, global average pooling (GAP) and one-dimensional convolution are implemented, creating lightweight models that save storage and training time. Comparative experiments show that the lightweight model with GAP implemented on dense layers and one-dimensional convolution on convolutional layers reduced storage volume by 94% and training time by 99%, despite a 2.9% decrease in classification accuracy. Moreover, the model with only GAP implemented on dense layers achieved the highest accuracy at 93.5%, while reducing storage volume and training time by 83% and 6%, respectively.This article is part of the theme issue 'Artificial intelligence in failure analysis of transportation infrastructure and materials'.
DOI: 10.6084/m9.figshare.8942336
title: Improved estimate of global gross primary production for reproducing its long-term variation, 1982-2017

description: We have updated our GPP dataset to 2018.<br>This dataset provides 8-day global gross
primary production (GPP) at 0.05° latitude by 0.05° longitude for 1982-2017.

 

(1) 
Model description and
performance

The GPP dataset was generated by the
revised EC-LUE model by integrating the regulations of several major
environmental variables: atmospheric CO2 concentration, radiation components
(i.e., direct and diffuse radiations), and atmospheric vapor pressure deficit
(VPD). The revised EC-LUE performed well in simulating the spatial, seasonal,
and interannual variations in global GPP. Particularly, it has a unique
superiority in reproducing the interannual variations in GPP at both site level
and global scales.

 

(2) 
Dataset information

Each .zip file contains all the 8-day GPP of
a year at daily value. To obtain the summation of each 8-day (or 5-day or
6-day) period, please multiply the GPP value by corresponding days (8 for the
first 45 values, and 5 or 6 for the last value).

 

Data format: HDF

Spatial extent: 90S-90N 180W-180E

Fill value: 65535

Scale factor: 0.01

Unit: g C m<sup>-2</sup> day<sup>-1</sup>

 

Any questions about the GPP dataset can be
corresponded to yuanwpcn@126.com (Wenping Yuan).
DOI: 10.6084/m9.figshare.16806681
title: Iron intake and multiple health outcomes: Umbrella review

description: Iron is an essential trace element, while excess iron can lead to different levels of physical abnormalities or diseases. This umbrella review aimed to conduct a systematic evaluation of the possible relationships between iron intake and various health outcomes. We retrieved PubMed, Embase, Web of Science, Scopus, and the Cochrane Database of Systematic Reviews from inception through May 2021. A total of 34 meta-analyses with 46 unique health outcomes were identified. Heme iron intake was positively associated with nine outcomes, including colorectal cancer, type 2 diabetes mellitus, and cardiovascular disease mortality, while dietary total iron intake could decrease the risk of colorectal adenoma, esophageal cancer, coronary heart disease, and depression. Iron supplementation was a protective factor against eight outcomes. However, it was associated with decreased length and weight gain. The quality of evidence for most outcomes was “low” or “very low” with the remaining eleven as “high” or “moderate”. All outcomes were categorized as class III, IV, or NS based on evidence classification. Although high iron intake has been identified to be significantly associated with a range of outcomes, firm universal conclusions about its beneficial or negative effects cannot be drawn given the low quality of evidence for most outcomes.
DOI: 10.6084/m9.figshare.16806681.v2
title: Iron intake and multiple health outcomes: Umbrella review

description: Iron is an essential trace element, while excess iron can lead to different levels of physical abnormalities or diseases. This umbrella review aimed to conduct a systematic evaluation of the possible relationships between iron intake and various health outcomes. We retrieved PubMed, Embase, Web of Science, Scopus, and the Cochrane Database of Systematic Reviews from inception through May 2021. A total of 34 meta-analyses with 46 unique health outcomes were identified. Heme iron intake was positively associated with nine outcomes, including colorectal cancer, type 2 diabetes mellitus, and cardiovascular disease mortality, while dietary total iron intake could decrease the risk of colorectal adenoma, esophageal cancer, coronary heart disease, and depression. Iron supplementation was a protective factor against eight outcomes. However, it was associated with decreased length and weight gain. The quality of evidence for most outcomes was “low” or “very low” with the remaining eleven as “high” or “moderate”. All outcomes were categorized as class III, IV, or NS based on evidence classification. Although high iron intake has been identified to be significantly associated with a range of outcomes, firm universal conclusions about its beneficial or negative effects cannot be drawn given the low quality of evidence for most outcomes.
DOI: 10.6084/m9.figshare.16806681.v1
title: Iron intake and multiple health outcomes: Umbrella review

description: Iron is an essential trace element, while excess iron can lead to different levels of physical abnormalities or diseases. This umbrella review aimed to conduct a systematic evaluation of the possible relationships between iron intake and various health outcomes. We retrieved PubMed, Embase, Web of Science, Scopus, and the Cochrane Database of Systematic Reviews from inception through May 2021. A total of 34 meta-analyses with 46 unique health outcomes were identified. Heme iron intake was positively associated with nine outcomes, including colorectal cancer, type 2 diabetes mellitus, and cardiovascular disease mortality, while dietary total iron intake could decrease the risk of colorectal adenoma, esophageal cancer, coronary heart disease, and depression. Iron supplementation was a protective factor against eight outcomes. However, it was associated with decreased length and weight gain. The quality of evidence for most outcomes was “low” or “very low” with the remaining eleven as “high” or “moderate”. All outcomes were categorized as class III, IV, or NS based on evidence classification. Although high iron intake has been identified to be significantly associated with a range of outcomes, firm universal conclusions about its beneficial or negative effects cannot be drawn given the low quality of evidence for most outcomes.
DOI: 10.6084/m9.figshare.14185282
title: Middle Triassic volcanic rocks from the Gangdese belt, southern Tibet: petrogenesis and implications for Tethys tectonic evolution

description: The voluminous Middle Triassic to Early Jurassic magmatic rocks in the southern Gangdese belt of Tibet have received wide attention in tracing the subduction history of the Yarlung-Zangbo Neo-Tethys Ocean (YZNTO) and Bangong-Nujiang Tethys Ocean (BNTO). Here we report a suite of volcanic rocks from the Gangdese arc belt and present results from petrological, geochemical and zircon U-Pb-Lu-Hf isotopic studies with a view to constrain their timing and magma source in relation to the Tethys tectonic evolution. Zircon U-Pb data show ages in the range of 237.2–235.0 Ma for the andesitic rocks, representing their eruption ages during the Middle Triassic. Zircon Lu-Hf data display markedly positive ε<sub>Hf</sub>(t) values of 11.44–15.99 with the two-stage model ages (T<sub>DM</sub><sup>C</sup>) of 535–241 Ma, suggesting that the magma was derived from depleted mantle or juvenile crust components. Geochemically, the andesitic rocks show low Sr/Y (20.26–43.74) and La/Yb ratios (8.52–14.21) in the absence of Eu anomalies, enrichment in LILEs (K, U, Rb, Ba) and LREEs, and depletion of HFSEs (Nb, Ta, Ti, Zr) and HREEs, suggesting normal arc andesite with emplacement in a continental island arc setting. Accordingly, we infer that these rocks were formed by partial melting of a young oceanic crust and sediments in the transitional zone between plagioclase and garnet stability within subduction-related setting, followed by fractional crystallization of amphibole and apatite. In conjunction with previous studies on the Tethys tectonic evolution, we argue that the southern margin of the Gangdese belt during the Middle Triassic might be unrelated with the northward subduction of the YZNTO and southward subduction of the BNTO. Our results suggest that the Middle Triassic magmatic suites in the southern margin of the south Gangdese belt were generated through the southward subduction of the Zhikong-Sumdo Tethys Ocean.