cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1141172.10fu
title: SH1141172.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1141176.10fu
title: SH1141176.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1141179.10fu
title: SH1141179.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1141180.10fu
title: SH1141180.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1141181.10fu
title: SH1141181.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1141184.10fu
title: SH1141184.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.14502247
title: Evaluation of the hybrid Air2stream model for simulating daily stream temperature during extreme summer heat wave and autumn drought conditions - Data sets and scripts

description: Overview

This repository contains the data and scripts used in the analyses presented in the following publication:

Callahan, L. and Moore, R.D. Evaluation of the hybrid Air2stream model for simulating daily stream temperature during extreme summer heat waves and autumn drought conditions. Hydrological Processes, DOI: 10.1002/hyp.70033.

Data files

a2s_8_parameter_values.csv

This file contains the values of the calibrated parameters a1 to a8 for the 8-parameter version of air2stream for each of the 23 hydrometric stations used in the analysis.

stn_hyd_reg.csv

This file contains the following information for each hydrometric station used in the analysis:

·       Water Survey of Canada (WSC) station number (station_number)

·       hydrologic regime (regime)

·       Water Survey of Canada station name (station_name)

·       regulation status (status)

ts_all_58.csv

This file contains daily time series of the input data and simulated and observed water temperatures for each of the 23 hydrometric station.

·       station_number - WSC station number

·       year, month, day - date

·       ta - daily mean air temperature

·       tw_obs - daily mean observed water temperature (°C)

·       tw_sim_8 - daily mean water temperature simulated by the 8-parameter version of air2stream (°C)

·       q - mean daily streamflow (m3s-1)

·       period - calibration/validation

·       date - date in yyyy-mm-dd format

·       tw_sim_5 - daily mean water temperature simulated by the 5-parameter version of air2stream (°C)

Scripts

01_generate_map.R

Generates a map showing hydrometric station locations within British Columbia

01_cal_val_stats.R

Computes root-mean-square error and mean bias error for calibration and validation periods for each hydrometric station.

01_generate_ts_plots.R

Generates time-series plots of observed and simulated water temperatures.

02_compare_air2stream_empirical.R

Computes RMSE and MBE for both versions of air2stream and five mixed-effects models.
DOI: 10.5281/zenodo.14502248
title: Evaluation of the hybrid Air2stream model for simulating daily stream temperature during extreme summer heat wave and autumn drought conditions - Data sets and scripts

description: Overview

This repository contains the data and scripts used in the analyses presented in the following publication:

Callahan, L. and Moore, R.D. Evaluation of the hybrid Air2stream model for simulating daily stream temperature during extreme summer heat waves and autumn drought conditions. Hydrological Processes, DOI: 10.1002/hyp.70033.

Data files

a2s_8_parameter_values.csv

This file contains the values of the calibrated parameters a1 to a8 for the 8-parameter version of air2stream for each of the 23 hydrometric stations used in the analysis.

stn_hyd_reg.csv

This file contains the following information for each hydrometric station used in the analysis:

·       Water Survey of Canada (WSC) station number (station_number)

·       hydrologic regime (regime)

·       Water Survey of Canada station name (station_name)

·       regulation status (status)

ts_all_58.csv

This file contains daily time series of the input data and simulated and observed water temperatures for each of the 23 hydrometric station.

·       station_number - WSC station number

·       year, month, day - date

·       ta - daily mean air temperature

·       tw_obs - daily mean observed water temperature (°C)

·       tw_sim_8 - daily mean water temperature simulated by the 8-parameter version of air2stream (°C)

·       q - mean daily streamflow (m3s-1)

·       period - calibration/validation

·       date - date in yyyy-mm-dd format

·       tw_sim_5 - daily mean water temperature simulated by the 5-parameter version of air2stream (°C)

Scripts

01_generate_map.R

Generates a map showing hydrometric station locations within British Columbia

01_cal_val_stats.R

Computes root-mean-square error and mean bias error for calibration and validation periods for each hydrometric station.

01_generate_ts_plots.R

Generates time-series plots of observed and simulated water temperatures.

02_compare_air2stream_empirical.R

Computes RMSE and MBE for both versions of air2stream and five mixed-effects models.
DOI: 10.6084/m9.figshare.c.3625595_d6.v1
title: Additional file 19: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Differentially-expressed genes for BCMV-S2 at 8Â days after infection. (ZIP 66Â kb)
DOI: 10.6084/m9.figshare.c.3625607_d6.v1
title: Additional file 6: of Effects of variable practice on the motor learning outcomes in manual wheelchair propulsion

description: Complete data set. (XLS 106 kb)
DOI: 10.6084/m9.figshare.c.3625619_d1.v1
title: Additional file 6: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: The sequences of 335 unigenes in the .fasta format. (FASTA 223 kb)
DOI: 10.6084/m9.figshare.c.3625595_d7.v1
title: Additional file 16 of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Significant alternate-splice transcripts for BCMV-S2 at 8Â days after infection. (ZIP 37Â kb)
DOI: 10.6084/m9.figshare.c.3625595_d8.v1
title: Additional file 22: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Genes in clusters determined by normalized expression values from the DE genes in each virus treatment. (ZIP 20Â kb)
DOI: 10.6084/m9.figshare.c.3625619_d2.v1
title: Additional file 2: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: The descriptions and mapping statistics of the 74 samples. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3625610_d4.v1
title: Additional file 2: of Evaluation of whole-genome sequencing of four Chinese crested dogs for variant detection using the ion proton system

description: PI chip productivity and per base quality scores. Table describing the yield and base quality of eight sequencing chips. (XLSX 40ย�kb)
DOI: 10.6084/m9.figshare.c.3625595_d9.v1
title: Additional file 9: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Variants from NL1I reads on the NL1I genome assembly. Variant-call-format file, showing single-nucleotide variants within the NL1I genome. (ZIP 3Â kb)
DOI: 10.6084/m9.figshare.c.3625619_d3.v1
title: Additional file 4: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: The annotation file of 5,884 lncRNAs in the .gtf format (cufflink output). (GTF 3031 kb)
DOI: 10.6084/m9.figshare.c.3625619_d4.v1
title: Additional file 5: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: Annotations of the 5,884 lncRNAs. (XLSX 336 kb)
DOI: 10.17863/cam.15762
title: Research data supporting 'An Anisotropic Interaction Model for Simulating Fingerprints'

description: This data contains the code and data necessary to reproduce the computational results published in 'An Anisotropic Interaction Model for Simulating Fingerprints'.
DOI: 10.6084/m9.figshare.c.3625595_d15.v1
title: Additional file 18: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Differentially-expressed genes for NL1-I at 8Â days after infection. (ZIP 139Â kb)
DOI: 10.6084/m9.figshare.c.3625673_d1.v1
title: Additional file 2: of Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes

description: List of all analyzed prokaryotic genomic sequences. Tab-delimited table of chromosomes and plasmids of complete prokaryotic genomes that were analyzed in the work. (TSV 445 kb)
DOI: 10.6084/m9.figshare.c.3625595_d16.v1
title: Additional file 20: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Gene ontology terms for differentially expressed genes under NL1-I infection. (ZIP 43Â kb)
DOI: 10.6084/m9.figshare.c.3625676_d1.v1
title: Additional file 2: Table S1. of Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing

description: Length distribution and frequency of small RNA tags. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3625619_d13.v1
title: Additional file 9: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: Differentially expressed lncRNA isoforms in pairwise comparisons. (XLSX 3558 kb)
DOI: 10.6084/m9.figshare.c.3625619_d14.v1
title: Additional file 7: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: The annotation file of 335 contigs in the .gff3 format (BLAT output). (GFF3 19 kb)
DOI: 10.6084/m9.figshare.c.3625673_d2.v1
title: Additional file 3: of Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes

description: List of all analyzed genomic sequences of eukaryotic viruses. Tab-delimited table of viral genome sequence IDs. (TSV 191 kb)
DOI: 10.6084/m9.figshare.c.3625676_d2.v1
title: Additional file 1: Table S8. of Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing

description: Primers used in this study for stem-loop RT-qPCR. (XLSX 10Â kb)
DOI: 10.17863/cam.50894
title: Research data supporting BBCE and: ‘WP 14: Carry van Lieshout and Robert J. Bennett “Company Directors: Directory and Census Record Linkage, 1881-1911”'

description: This database gives the coded directors and their companies as listed in the Directory of Directors for years 1882, 1892, 1902, 1912 (judged the most relevant for the census years) and also codes those linked to census records 1881-1911 for which their full census record is available in BBCE and linked to I-CeM. Record linkage match between DoD and censuses was 36% for 18,200 directors; but the database gives all DOD directors coded to business sectors, locations, and roles they played in each company.
DOI: 10.6084/m9.figshare.c.3625673_d3.v1
title: Additional file 4: of Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes

description: The actual pairs dataset. Tab-delimited table of site-genome pairs where site is the recognition site of one of R-M systems encoded in the genome. (TSV 435 kb)
DOI: 10.6084/m9.figshare.c.3625676_d3.v1
title: Additional file 5: Table S4. of Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing

description: Novel miRNAs with the first nucleotide bias for 18- to 26-nt small RNAs. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3625673_d4.v1
title: Additional file 1: of Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes

description: List of sites of all R-M systems available in REBASE. Tab-delimited table of recognition sites of R-M systems that were analyzed in the work. (TSV 162 kb)
DOI: 10.6084/m9.figshare.c.3625595_d18.v1
title: Additional file 21: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Gene ontology terms for differentially expressed genes under BCMV-S2 infection. (ZIP 41Â kb)
DOI: 10.6084/m9.figshare.c.3625679_d1.v1
title: Additional file 1: of Thromboelastometry versus free-oscillation rheometry and enoxaparin versus tinzaparin: an in-vitro study comparing two viscoelastic haemostatic testsâ   dose-responses to two low molecular weight heparins at the time of withdrawing epidural catheters from ten patients after major surgery

description: Raw data of our results. (TXT 3 kb)
DOI: 10.15468/dl.wzk2hb
title: Occurrence Download

description: A dataset containing 319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is French Guiana",
 "TaxonKey is Tapirira guianensis Aubl."
 ]
}

 The dataset includes 319 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037838-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3625724_d1.v1
title: Additional file 2: of Reductions in hypothalamic Gfap expression, glial cells and α-tanycytes in lean and hypermetabolic Gnasxl-deficient mice

description: Functional enrichment analysis using the DAVID bioinformatics resources. The whole mouse genome was used as background with default parameter settings. Full results, including p-values after correcting for multiple hypotheses testing, are shown. Statistically significant enriched categories amongst overexpressed genes related to the two broad categories of ‘ribosomes/rRNA binding and translation’ and ‘mitochondria/electron transport chain’. Amongst the down-regulated genes no statistically significant categories were found. (XLSX 166 kb)
DOI: 10.6084/m9.figshare.c.3625700_d5.v1
title: Additional file 5: File S3. of Gender differences in murine pulmonary responses elicited by cellulose nanocrystals

description: The list of key transcriptional factors which regulated the expression of the upregulated differentially expressed genes in males and females upon exposure to CNC. The prediction of transcription factors was performed using ChEA (ChIP Enrichment Analysis) software tool. A P value cutoff of ≤ 0.05 was considered significant in each case. (XLSX 32 kb)
DOI: 10.17863/cam.80891
title: Research Data Supporting ‘A robust and interpretable machine learning approach using multimodal biological data to predict future pathological tau accumulation’

description: Multimodal predictor and outcome data used to train machine learning models to predict future tau accumulation. Predictor data includes measures of Aß (PET), medial temporal grey matter density (MRI) and APOE genotype. Outcome data include longitudinal categories of clinical decline and tau burden/rates of decline (PET). The data for each of the samples presented in the manuscript is found in the ‘master_data_file.xlsx. Also included are all source data used to generate the figures and tables presented in the manuscript ‘Source data.xlsx’. A detailed description of these data is given in the ‘description of uploaded files.doc’. The custom code developed to implement the machine learning approach is provided as a MATLAB package ‘Giorgio et al 2022 Custom code’. Within this folder are top level wrapper functions, the machine learning implementation, post hoc analysis functions and sample data to run the code. A full description of the attached code and data can be found in ‘Giorgio et al 2020 Custom code read me.doc’.
DOI: 10.6084/m9.figshare.c.3625721_d3.v1
title: Additional file 3: Text S1. of Diversity and distribution of alpha satellite DNA in the genome of an Old World monkey: Cercopithecus solatus

description: Alignment used to generate the phylogenetic tree from Fig. 7a. (TXT 28 kb)
DOI: 10.6084/m9.figshare.c.3625721_d4.v1
title: Additional file 4: Text S2. of Diversity and distribution of alpha satellite DNA in the genome of an Old World monkey: Cercopithecus solatus

description: Alignment used to generate the phylogenetic tree from Fig. 7b. (TXT 48 kb)