cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14434709.v1
title: Additional file 12 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 12:List of goat CNVRs with human orthologous genes. EntrezGene ID and gene name are reported for human orthologous genes. The file includes genes already mapped in goat and genes for which mutations in human cause or are associated with human genetic diseases (data have been retrieved from OMIM database, May 2010). (XLS 60 KB)
DOI: 10.6084/m9.figshare.14446680.v15
title: Additional file of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file of An initial comparative map of copy number variations in the goat (Capra hircus) genome
DOI: 10.6084/m9.figshare.14434709
title: Additional file 12 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 12:List of goat CNVRs with human orthologous genes. EntrezGene ID and gene name are reported for human orthologous genes. The file includes genes already mapped in goat and genes for which mutations in human cause or are associated with human genetic diseases (data have been retrieved from OMIM database, May 2010). (XLS 60 KB)
DOI: 10.6084/m9.figshare.14434730
title: Additional file 2 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 2:List of CNVRs obtained by merging overlapping CNVs across animals. The Excel file reports the progressive CNVR number, the chromosome, the nucleotides position of the CNVR start and end (referred to the Btau_4.0 genome assembly), the size of the CNVR in bp, the number of valid probes in the CNVR (additional probes are included in CNVR considering the position between two contiguous regions without 0.175 log2 value; see Methods for the definition of CNVR), the type of CNVR (gain/loss), the frequency of CNVR in the analysed goat panel, the goat breed (C = Camosciata delle Alpi; G = Girgentana; MG = Murciano-Granadina; S = Saanaen), and the goat subject (numbers after the breed symbols indicate the different animals used in the aCGH experiment). (XLS 1 MB)
DOI: 10.6084/m9.figshare.14434727.v1
title: Additional file 1 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 1:List of CNVs identified in the analysed goats. The Excel file reports the chromosome, the nucleotides position of the CNV start and end (referred to the Btau_4.0 genome assembly), the size of the CNV in bp, the number of valid probes in the CNV (additional probes are included in CNV considering the position between two contiguous regions without 0.175 log2 value; see Methods for the definition of CNV), log2 mean of the probes in the CNV (see Methods), the type of CNV (gain/loss), the goat sample (C = Camosciata delle Alpi; G = Girgentana; MG = Murciano-Granadina; S = Saanaen; numbers after the breed symbols indicate the different animals used in the aCGH experiment), and the goat breed. (XLS 1 MB)
DOI: 10.6084/m9.figshare.14434730.v1
title: Additional file 2 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 2:List of CNVRs obtained by merging overlapping CNVs across animals. The Excel file reports the progressive CNVR number, the chromosome, the nucleotides position of the CNVR start and end (referred to the Btau_4.0 genome assembly), the size of the CNVR in bp, the number of valid probes in the CNVR (additional probes are included in CNVR considering the position between two contiguous regions without 0.175 log2 value; see Methods for the definition of CNVR), the type of CNVR (gain/loss), the frequency of CNVR in the analysed goat panel, the goat breed (C = Camosciata delle Alpi; G = Girgentana; MG = Murciano-Granadina; S = Saanaen), and the goat subject (numbers after the breed symbols indicate the different animals used in the aCGH experiment). (XLS 1 MB)
DOI: 10.6084/m9.figshare.14446659
title: Additional file 3 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 3:Extension of CNVRs in the different chromosomes. Proportion of the CNVRs identified in goat compared to the dimension of the bovine chromosomes. (XLS 14 KB)
DOI: 10.6084/m9.figshare.14446659.v1
title: Additional file 3 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 3:Extension of CNVRs in the different chromosomes. Proportion of the CNVRs identified in goat compared to the dimension of the bovine chromosomes. (XLS 14 KB)
DOI: 10.6084/m9.figshare.14446662
title: Additional file 4 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 4:List of cattle CNVRs reported in four other experiments[49–52]and overlapping with goat CNVRs. CNVRs identified in cattle have been merged from the four reported experiments [49–52]. Progressive CNVR number has been assigned using the complete list. CNVRs are indicated with nucleotide positions (begin and end) on the Btau_4.0 version. Information reported for the four different experiments includes the progressive number and in parenthesis the chromosome number and the nucleotide positions (start and end). The goat CNVRs are reported. (XLS 128 KB)
DOI: 10.6084/m9.figshare.14446671
title: Additional file 7 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 7:Semiquantitative fluorescent multiplex-PCR (SQF-PCR) results obtained for different goats. The averaged SQF-PCR ratio normalized against the reference Camosciata delle Alpi goat is reported for the goats of the aCGH panel and for additional goats (additional panel) for the validated CNVs. (XLS 20 KB)
DOI: 10.6084/m9.figshare.14446671.v1
title: Additional file 7 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 7:Semiquantitative fluorescent multiplex-PCR (SQF-PCR) results obtained for different goats. The averaged SQF-PCR ratio normalized against the reference Camosciata delle Alpi goat is reported for the goats of the aCGH panel and for additional goats (additional panel) for the validated CNVs. (XLS 20 KB)
DOI: 10.6084/m9.figshare.14434727
title: Additional file 1 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 1:List of CNVs identified in the analysed goats. The Excel file reports the chromosome, the nucleotides position of the CNV start and end (referred to the Btau_4.0 genome assembly), the size of the CNV in bp, the number of valid probes in the CNV (additional probes are included in CNV considering the position between two contiguous regions without 0.175 log2 value; see Methods for the definition of CNV), log2 mean of the probes in the CNV (see Methods), the type of CNV (gain/loss), the goat sample (C = Camosciata delle Alpi; G = Girgentana; MG = Murciano-Granadina; S = Saanaen; numbers after the breed symbols indicate the different animals used in the aCGH experiment), and the goat breed. (XLS 1 MB)
DOI: 10.6084/m9.figshare.14446674
title: Additional file 8 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 8:Gene Ontology (GO) annotation of genes included in goat CNVRs. Ensembl cattle transcripts located in goat CNVRs have been annotated using GO for Biological process, Cellular component, and Molecular function. (XLS 108 KB)
DOI: 10.6084/m9.figshare.14446674.v1
title: Additional file 8 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 8:Gene Ontology (GO) annotation of genes included in goat CNVRs. Ensembl cattle transcripts located in goat CNVRs have been annotated using GO for Biological process, Cellular component, and Molecular function. (XLS 108 KB)
DOI: 10.6084/m9.figshare.14446677
title: Additional file 9 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 9:PANTHER annotation of genes included in goat CNVRs. Ensembl cattle transcripts located in goat CNVRs have been annotated using PANTHER. (XLS 102 KB)
DOI: 10.6084/m9.figshare.14446677.v1
title: Additional file 9 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 9:PANTHER annotation of genes included in goat CNVRs. Ensembl cattle transcripts located in goat CNVRs have been annotated using PANTHER. (XLS 102 KB)
DOI: 10.6084/m9.figshare.14446680
title: Additional file of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file of An initial comparative map of copy number variations in the goat (Capra hircus) genome
DOI: 10.6084/m9.figshare.14446680.v17
title: Additional file of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file of An initial comparative map of copy number variations in the goat (Capra hircus) genome
DOI: 10.6084/m9.figshare.14446662.v1
title: Additional file 4 of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file 4:List of cattle CNVRs reported in four other experiments[49–52]and overlapping with goat CNVRs. CNVRs identified in cattle have been merged from the four reported experiments [49–52]. Progressive CNVR number has been assigned using the complete list. CNVRs are indicated with nucleotide positions (begin and end) on the Btau_4.0 version. Information reported for the four different experiments includes the progressive number and in parenthesis the chromosome number and the nucleotide positions (start and end). The goat CNVRs are reported. (XLS 128 KB)
DOI: 10.6084/m9.figshare.14446680.v16
title: Additional file of An initial comparative map of copy number variations in the goat (Capra hircus) genome

description: Additional file of An initial comparative map of copy number variations in the goat (Capra hircus) genome
DOI: 10.6084/m9.figshare.14446696.v11
title: Additional file of Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

description: Additional file of Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans
DOI: 10.6084/m9.figshare.14446696.v17
title: Additional file of Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

description: Additional file of Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans
DOI: 10.6084/m9.figshare.14434787
title: Additional file 1 of Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

description: Additional file 1:Complete list of P. infestans predicted secretome. Microsoft Excel spreadsheet containing complete list of P. infestans secretome genes, including annotation steps, biological processes and biological function categories, genomic and expression data. (XLS 3 MB)
DOI: 10.6084/m9.figshare.14434787.v1
title: Additional file 1 of Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

description: Additional file 1:Complete list of P. infestans predicted secretome. Microsoft Excel spreadsheet containing complete list of P. infestans secretome genes, including annotation steps, biological processes and biological function categories, genomic and expression data. (XLS 3 MB)
DOI: 10.6084/m9.figshare.14446687
title: Additional file 7 of Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

description: Additional file 7:Alignments used for 3D modeling of P. infestans berberine bridge enzymes and alpha carbonic anhydrase. (TXT 11 KB)
DOI: 10.6084/m9.figshare.14446687.v1
title: Additional file 7 of Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

description: Additional file 7:Alignments used for 3D modeling of P. infestans berberine bridge enzymes and alpha carbonic anhydrase. (TXT 11 KB)
DOI: 10.6084/m9.figshare.12874545.v22
title: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

description: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
DOI: 10.6084/m9.figshare.12874545.v23
title: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

description: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
DOI: 10.6084/m9.figshare.12874545.v24
title: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

description: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
DOI: 10.6084/m9.figshare.12874545.v21
title: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

description: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
DOI: 10.6084/m9.figshare.12874545.v25
title: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

description: Additional file of Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
DOI: 10.6084/m9.figshare.13435094
title: Raw Sequence Data

description: <b></b>To verify some of the significant CpGs from the genome-wide analysis, we selected the target CpGs at the warfarin-associated genes. Thereafter, we used pyrosequencing to detect the methylation levels of CpGs with more samples in the validation cohort (low-dose group: 37; medium-dose group: 59; and high-dose group: 35). DNA was extracted from peripheral blood cells using the TIANamp Blood DNA Kit (Cat. #DP318, Tiangen, China) and DNA bisulfite conversion was conducted in a bisulfite batch with the EpiTect Bisulfite Kit (Cat. #59104, Qiagen, German); then, the converted DNA used as the template for PCR amplification. All primers for PCR and sequencing were designed by PyroMark Assay Design 2.0 Software (version 2.0.01.15; Qiagen, German). Pyrosequencing was carried out by PyroMark Q24 (Qiagen, German). The EpiTect Control DNA and Control DNA Set(Cat. #59695, QIAGEN; German) was used in the pyrosequencing. In addition,the PyroMark Q24 Validation Oligo(Cat. #979203, QIAGEN; German) was also used to check the performance of the PyroMark Q24 system.
DOI: 10.6084/m9.figshare.13435094.v3
title: Raw Sequence Data

description: <b></b>To verify some of the significant CpGs from the genome-wide analysis, we selected the target CpGs at the warfarin-associated genes. Thereafter, we used pyrosequencing to detect the methylation levels of CpGs with more samples in the validation cohort (low-dose group: 37; medium-dose group: 59; and high-dose group: 35). DNA was extracted from peripheral blood cells using the TIANamp Blood DNA Kit (Cat. #DP318, Tiangen, China) and DNA bisulfite conversion was conducted in a bisulfite batch with the EpiTect Bisulfite Kit (Cat. #59104, Qiagen, German); then, the converted DNA used as the template for PCR amplification. All primers for PCR and sequencing were designed by PyroMark Assay Design 2.0 Software (version 2.0.01.15; Qiagen, German). Pyrosequencing was carried out by PyroMark Q24 (Qiagen, German). The EpiTect Control DNA and Control DNA Set(Cat. #59695, QIAGEN; German) was used in the pyrosequencing. In addition,the PyroMark Q24 Validation Oligo(Cat. #979203, QIAGEN; German) was also used to check the performance of the PyroMark Q24 system.
DOI: 10.14469/hpc/7720
title: FAIR Data table S1. Computed free energies for substitution reactions of 2.

description: FAIR Interactive table S1.
DOI: 10.14469/hpc/7971
title: DCM + CC (singlet), CCSD/Def2-TZVPPD TS Cs symmetry G = -1034.41125 ΔG = 10.7 kcal/mol

description: Gaussian Calculation
DOI: 10.14469/hpc/8079
title: C2 (triplet) + Dichloromethane, TS

description: Gaussian 16 calculation
DOI: 10.5281/zenodo.4646959
title: Worldwide catalogue of spatio-climatic devices

description: This publication contains a catalogue of built public spaces that integrate urban cooling techniques - called here spatio-climatic devices. Each device is characterized through two kinds of information: descriptive data and qualitative data. Descriptive data columns contain facts that describe de device's location, actors involved, technical means and source of information. Qualitative data columns synthesize the results of a qualitative coding process conducted by the two researchers and aiming at characterizing the device's spatial layout, climatic effect and urban experience. More detailed explanations are provided in the README file. The authors acknowledge the support of the French Agence Nationale de la Recherche (ANR) under reference ANR-18-CE22-0003 (COOLSCAPES project).
description: COOLSCAPES is a research project funded by the French National Research Agency ANR (ANR-18-CE22-0003)
DOI: 10.6084/m9.figshare.14446713
title: SNPs of Cociella crocodilus generated using whole genome survey sequencing

description: In this study, the whole genome survey sequencing were performed and genome-wide SNPs were generated based on these data. These SNP markers should be useful in future genetics and genomics of this species.
DOI: 10.6084/m9.figshare.14446713.v1
title: SNPs of Cociella crocodilus generated using whole genome survey sequencing

description: In this study, the whole genome survey sequencing were performed and genome-wide SNPs were generated based on these data. These SNP markers should be useful in future genetics and genomics of this species.
DOI: 10.15468/dl.6hq8ff
title: Occurrence Download

description: A dataset containing 892745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Portugal",
 "Geometry POLYGON((-7.46868 41.18069,-7.1417 41.18069,-7.1417 41.41191,-7.46868 41.41191,-7.46868 41.18069))",
 "TaxonKey is Plantae",
 "Year 1980-2024"
 ]
}

 The dataset includes 892745 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106283-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jc57ur
title: Occurrence Download

description: A dataset containing 2216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mimosa diplotricha C.Wright"
 ]
}

 The dataset includes 2216 records from 176 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106287-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38jfcz
title: Occurrence Download

description: A dataset listing the 0 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hygrophila R.Br.",
 "Country is Canada",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 0 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192826-200613084148143/datasets/export for details.
DOI: 10.15468/dl.jfeqzj
title: Occurrence Download

description: A dataset listing the 5 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceratophyllum L.",
 "Country is Canada",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 5 records were derived from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192819-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spwcf8
title: Occurrence Download

description: A dataset listing the 5 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceratophyllum L.",
 "Country is Mexico",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 5 records were derived from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192816-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcnmqf
title: Occurrence Download

description: A dataset listing the 9 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hygrophila R.Br.",
 "Country is Mexico",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 9 records were derived from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192824-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jw6fw
title: Occurrence Download

description: A dataset listing the 59 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Characeae",
 "Country is Mexico",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 59 records were derived from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192843-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hr2rdk
title: Occurrence Download

description: A dataset listing the 17 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hygrophila R.Br.",
 "Country is United States of America",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 17 records were derived from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192825-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3a2bjr
title: Occurrence Download

description: A dataset listing the 10 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ludwigia L.",
 "Country is Canada",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 10 records were derived from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192836-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9cjzjy
title: Occurrence Download

description: A dataset listing the 69 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Characeae",
 "Country is Canada",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 69 records were derived from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192847-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.