cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25474333.v1
title: Supplementary Material for: Acceptability of Two Perturbation-based Balance Training Paradigms: Perturbation Treadmill vs Dynamic Stability Training in the Presence of Perturbations

description: Introduction: Perturbation-based balance training is promising for fall prevention in older adults mimicking real-life fall situations at a person’s stability thresholds to improve reactive balance. Hence, it can be associated with anxiety, but knowledge about the acceptability of perturbation-based balance training is scarce.
Method: This is a secondary analysis of a randomized controlled trial comparing effects of two different perturbation-based balance training paradigms that aims to evaluate and compare the acceptability of those training paradigms in fall-prone older adults. Participants (74.9±5.7 years) who completed the training (6 weeks, 3x/week) on either a perturbation treadmill (PBTtreadmill: n=22) or unstable surfaces in the presence of perturbations (PBTstability: n=27) were surveyed on the acceptability of perturbation-based balance training using a 21-items questionnaire addressing seven domains (perceived effectiveness, tailoring, demand, safety, burden, devices, affective attitude), based on the Theoretical Framework of Acceptability and context-specific factors. Relative scores (% of absolute maximum) for single items and domains were calculated.
Results: Median domain scores of perceived effectiveness, tailoring, safety, devices, and affective attitude were all ≥70% for both paradigms. The highest scores were obtained for tailoring (both paradigms=100% [interquartile range 80-100%]). Domain scores of demand and burden were in the medium range (40-45%) for both paradigms. No significant differences between paradigms were found for any domain score. Two single items of safety differed significantly, with PBTtreadmill perceived as needing less support (p=.015) and leading less often to balance loss (p=.026) than PBTstability.
Conclusion: Perturbation-based balance training conducted on a perturbation treadmill or on unstable surfaces is well accepted in this fall-prone older sample, even though it is conducted at individual stability thresholds. Tailoring may play a key role in achieving high levels of perceived effectiveness, appropriate levels of demand and burden, and high sense of safety. Perturbation-based balance training delivered on treadmills might be more appropriate for more anxious persons.
DOI: 10.6084/m9.figshare.17012657.v1
title: Supplementary Material for: Does Whole-Body Vibration Training Have a Concurrent Effect on Bone and Muscle Health? A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Aging results in musculoskeletal disorders, which are a leading cause of disability worldwide. While conventional nonpharmacological treatments have included interventions such as resistance exercise, there are subgroups of people who may be at risk of exercise-related injuries, for example, falls. Whole-body vibration (WBV) is an intervention that helps improve musculoskeletal function and is viable for those with limited mobility. <b><i>Objectives:</i></b> Whether WBV has a dual effect on bone and muscle conditions remains unknown. We aim to assess the evidence of the effects of WBV on bone and muscle parameters concurrently in older people. <b><i>Methods:</i></b> Under Preferred Reporting Items for Systematic Review and Meta-Analysis guidelines, a systematic literature search was performed in MEDLINE, EMBASE, EMCARE, and the Cochrane Central Registry of Controlled Trials. The main outcomes were changes in bone and muscle parameters. <b><i>Results:</i></b> Our meta-analysis showed that WBV does not have significant synergistic effects on measured bone (bone mineral density [BMD] in the hip and lumbar spine) and muscle (lean muscle mass and sit-to-stand time) outcomes, compared to controls (i.e., no WBV included). <b><i>Conclusion:</i></b> While there were no significant results, the included studies are limited by small sample size and variable intervention protocols and follow-up periods. Further trials should endeavor to measure both bone and muscle outcomes concurrently with a longer follow-up time. Osteoporosis status in participants must also be considered as it is not yet possible to exclude that WBV may have a significant effect on BMD in people with known osteoporosis. WBV does not appear to simultaneously influence bone and muscle health in older people, and future research is required to establish a regimen that may lead to measurable clinical efficacy.
DOI: 10.6084/m9.figshare.11405598.v1
title: Test three morphological methods to delineate cities

description: This data set can be used to reproduce the analyses made by the authors in their paper “Morphological delineation of cities based on scaling properties of urban patterns: a comparison of three methods”. It contains 12 shapefiles that represent theoretical urban patterns and 4 shapefiles that can be used to delineate the morphological agglomeration of Brussels (Belgium). It also contains a R script to calculate the carrying capacity of a logistic percolation function.<br>Description of each file<br>2_Figure_1: theoretical street network for testing the Natural Cities method<br>3_Figure_2: theoretical street network for the comparison of two variants of the Natural Cities method<br>4_Figure_3: theoretical street network to evaluate the effects of the spatial extent of the study area on the delineation of Natural Cities<br>5_Figure_5a: theoretical pattern for testing MorphoLim (building footprints) – dense urban core<br>6_Figure_5b: theoretical pattern for testing MorphoLim (building footprints) – less dense urban core<br>7_Figure_6: theoretical pattern (building footprints) to evaluate the effects of the geographic extent of the study area on the delineation with MorphoLim<br>8_Percolation_C_Calculation: R code to calculate the carrying capacity of a logistic function (Hierarchical Percolation)<br>9_Figure_7: theoretical street network for testing Hierarchical Percolation<br>10_Figure_8: theoretical polycentric street network for testing Hierarchical Percolation <br>11_Figure_9ac: theoretical urban pattern crossed by a large non built area (road intersections)<br>12_Figure_9b: theoretical urban pattern crossed by a large non built area (building footprints)<br>13_Figure_10ac: theoretical pattern where a built ribbon links two urban centres (roads intersections )<br>14_Figure_10b: theoretical pattern where a built ribbon links two urban centres (building footprints)<br>15_Belgium_buildings: cadastral data of buildings (2D) for Belgium (© 2009 Administration Générale de la Documentation Patrimoniale)<br>16_Brabant_buildings: cadastral data of buildings (2D) for the province of Brabant (© 2009 Administration Générale de la Documentation Patrimoniale)<br>17_Belgium_roads: road network data come from the platform Geofabrik of OpenStreetMap (http://download.geofabrik.de, accessed 08/21/2018) for Belgium<br>18_Brabant_roads: Road network data come from the platform Geofabrik of OpenStreetMap (http://download.geofabrik.de, accessed 08/21/2018) for the province of Brabant.<br>
DOI: 10.4225/49/5732e99136e1d
title: UQV100: An IR Test Collection With Query Variability

description: <b>Abstract from the SIGIR 2016 short paper (DOI below)</b>: We describe the UQV100 test collection, designed to incorporate variability from users. Information need “backstories” were written for 100 topics (or sub-topics) from the TREC 2013 and 2014 Web Tracks. Crowd workers were asked to read the backstories, and provide the queries they would use; plus effort estimates of how many useful documents they would have to read to satisfy the need. A total of 10,835 queries were collected from 263 workers. After normalization and spell-correction, 5,764 unique variations remained; these were then used to construct a document pool via Indri-BM25 over the ClueWeb12 corpus. Qualified crowd workers made relevance judgments relative to the backstories, using a relevance scale similar to the original TREC approach; first to a pool depth of ten per query, then deeper on a set of targeted documents. The backstories, query variations, normalized and spell-corrected queries, effort estimates, run outputs, and relevance judgments are made available collectively as the UQV100 test collection. We also make available the judging guidelines and the gold hits we used for crowd-worker qualification and spam detection. We believe this test collection will unlock new opportunities for novel investigations and analysis, including for problems such as task-intent retrieval performance and consistency (independent of query variation), query clustering, query difficulty prediction, and relevance feedback, among others.<br><b>Files</b>: Download uqv100-allfiles.zip to get all of the files available as part of this collection, including README.txt. <br><b>Citation</b>: Please cite the paper linked below if you make use of the collection.<br><b>Authors</b>: Peter Bailey (Microsoft), Alistair Moffat (The University of Melbourne), Falk Scholer (RMIT University), Paul Thomas (Microsoft).<br><br>
DOI: 10.6084/m9.figshare.27888624.v1
title: Supplementary Material for: Comprehensive Analysis of RNA Methylation Regulated gene signature and Immune Infiltration in Ischemia/Reperfusion-Induced Acute Kidney Injury

description: Introduction: The morbidity and mortality of acute kidney injury (AKI) are increasing. Epigenetic regulation and immune cell infiltration are thought to be involved in the AKI. However, the relationship between epigenetic regulation and immune cell infiltration in AKI has not been elucidated. This study was conducted to identify the differentially expressed genes (DEGs), differentially expressed RNA methylation genes (DEMGs), and infiltrated immune cells in the kidneys of ischemia reperfusion induced- acute kidney injury (IRI-AKI) models and further explore their relationships in IRI-AKI.
Methods: This is a bioinformatic analysis using R programming language in 3 selected IRI-AKI datasets from the Gene Expression Omnibus (GEO) database, including 16 IRI-AKI kidney tissues and 10 normal kidney tissues. The DEGs were screened, and enrichment pathways were analyzed using gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) database. The DEMGs and core DEMGs were identified using the R package. The ROC curve was plotted to predict disease occurrence of 7 core DEMGs. The correlation of 7 core DEMGs and other genes was analyzed using Pearson’s correlation test. The gene set enrichment analysis (GSEA) of each DEMG was conducted using the R package. The upstream miRNAs and transcript factors of 7 core DEMGs were predicted based on the RegNetwork database and Cytoscape software. The STITCH database was used to predict the possible binding compounds of the 7 core DEMGs. Immune cell infiltration in kidney tissues between the IRI-AKI group and control group was evaluated using the R package.
Results: A total of 2367 DEGs were obtained, including 1180 upregulated and 1187 downregulated genes in IRI-AKI kidney associated with the cell structure, proliferation, molecule binding/interaction, and signaling pathways such as the leucocyte migration and chemokine signaling pathways. Ten DEMGs were identified, with Ythdf1, Rbm15, Trmt6, Hnrnpc, and Dnmt1 being significantly upregulated, while Lrpprc, Cyfip2, Mettl3, Ncbp2, and Nudt7 were significantly downregulated in IRI-AKI tissues. The molecules interacting with 7 core DEMGs were identified. Significant changes in the infiltration of 8 types of immune cells were observed in IRI-AKI kidneys compared to normal controls. The significant correlation between 6 core DEMGs and the infiltration of immune cells was observed.
Conclusion: IRI may induce AKI through RNA methylation to regulate the expression of genes involved in immune cell infiltration.
DOI: 10.6084/m9.figshare.12792374.v1
title: OCTScans_metadata

description: metadata relative to the raw OCT scans, relating the acquisition date of the OCT scans with the relative days of biofilm development and the replicate<br>
DOI: 10.25452/figshare.plus.23903202.v2
title: Dataset supporting "Inhibitory feedback from the motor circuit gates mechanosensory processing in <i>Caenorhabditis elegans</i>"

description: This is the dataset used in the <i>PLOS Biology</i> publication- Kumar S, Sharma AK, Tran A, Liu M, Leifer AM (2023) Inhibitory feedback from the motor circuit gates mechanosensory processing in <i>Caenorhabditis elegans</i>. PLoS Biol 21(9): e3002280. Previously published closed-loop high throughput optogenetic delivery system (Liu M, Kumar S, Sharma AK, Leifer AM (2022) A high-throughput method to deliver targeted optogenetic stimulation to moving <i>C</i>. <i>elegans</i> populations. PLoS Biol 20(1): e3001524) was used to track worms crawling on an agarose plate as well as deliver optogenetic stimulus to worms in real time depending on the current behavior state of the worms. In this work, worms were optogenetically stimulated in various behavior states such as forward, turn, and reverse. We investigated key reversal neurons such as AIZ, RIM, AIB, AVE, and AVA as well as the turning neurons RIV, SMB, and SAA.Datasets are arranged in folders with the corresponding figure name. For e.g. the folder 'figure_2_and_supplementary_figure_S4' contains the dataset used in generating figure 2 and supplementary figure S4. Each folder consists of .mat file for a worm strain and the corresponding behavior assay. For e.g. in 'figure_2_and_supplementary_figure_S4' folder, there is a .mat file named as 'raw_data_AIB_closed_loop_blue_stim.mat'. This file contains the data for optogenetic stimulation in a closed-loop behavior assay for the strain expressing an excitatory opsin in neuron AIB. The .mat file has the following information on each worm track: worm's velocity, centerline, ellipse ratio, optogenetic stimulus, etc. More details about each of the experiments carried out in this study can be found in Table 2 of the <i>PLOS Biology </i>manuscript.The MATLAB code used to analyze the data and generate figures presented in this work is available on GitHub at https://github.com/leiferlab/kumar-sensorimotor-integration.gitIf you use this dataset, please cite the following works in addition to citing the dataset itself:Kumar S, Sharma AK, Tran A, Liu M, Leifer AM (2023) Inhibitory feedback from the motor circuit gates mechanosensory processing in <i>Caenorhabditis elegans</i>. PLoS Biol 21(9): e3002280.Liu M, Kumar S, Sharma AK, Leifer AM (2022) A high-throughput method to deliver targeted optogenetic stimulation to moving <i>C</i>. <i>elegans</i> populations. PLoS Biol 20(1): e3001524.
DOI: 10.6084/m9.figshare.13040708.v2
title: An Evaluation of the 2035 WHO End TB Strategy in 40 High Burden Countries

description: <b>Table 1:</b> Results of linear model fit to TB incidence data for all 40 countries, 2000-2018. <b>Table 2:</b> Assessment of End TB targets in 25 countries without high HIV burden. <b>Table 3:</b> Assessment of End TB targets in 15 countries with high HIV burden, separated by HIV infection.<br>
DOI: 10.60893/figshare.pof.25998865.v1
title: Supplementary Online Material

description: This file is the updated supplementary material for the boundary conditions of WRF-CFD model, RANS equations, and Reynolds number equations (updated based on reviewers' comments). Please delete the previous zip file of supplementary material.
DOI: 10.15468/dl.jh94h7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Dugesia bijuga Harrath & Sluys, 2019, Dugesia pustulata Harrath & Sluys, 2019, Dugesia congolensis de Beauchamp, 1951, Dugesia gonocephala (Duges, 1830), Dugesia neumanni (Neppi, 1904), Dugesia tanganyikae (Laidlaw, 1906), Dugesia astrocheta Marcus, 1953, Dugesia didiaphragma De Vries, 1988, Dugesia ectophysa Marcus, 1953, Dugesia didiaphragma De Vries, 1988)",
 "Country is one of (Nigeria)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009484-250426092105405/datasets/export for details.
DOI: 10.6084/m9.figshare.19209423.v1
title: Data

description: A .zip archive containing the following folder structure:<br>data├── reviews│ ├── com.reddit.frontpage_cleaned.csv│ ├── com.snapchat.android_cleaned.csv│ ├── com.soundcloud.android_cleaned.csv│ └── com.twitter.android_cleaned.csv└── training └── truthset.csv<br>The files under data/reviews are user-reviews scraped from the Google Play Store. User-reviews that were either empty or shorter than 5 words in length have been removed, hence the files have the '_cleaned' suffix.<br>The truthset can be used to train a classification algorithm to detect Alert/non-Alert days in daily aggregates of user-reviews.
DOI: 10.6084/m9.figshare.28685312.v19
title: Supplementary Material for: Evidence on protective factors for dementia and cognitive impairment in older adults: an umbrella review

description: Introduction: Dementia represents a global public health challenge, and no conclusive evidence exists on how to prevent its onset or at least reduce the risk. This umbrella review aims to identify interventions or exposures that can reduce the incidence of dementia or cognitive impairment.
Methods: A search of meta-analyses and systematic reviews published from 2018 to 2025 (January) was conducted across four databases. Articles assessing associations between interventions or exposures to protective factors and incidence of dementia or cognitive decline in non-demented older adults were selected.
Results: Out of 6,324 articles, 177 underwent full-text screening, and 17 were included. They showed that psychosocial factors (social engagement, purpose in life, life satisfaction, and cognitive reserve) and influenza vaccination protect against dementia. Evidence on antihypertensives is promising, while evidence on low-dose aspirin is promising yet inconclusive. No clear results emerged for both single- and multi-domain lifestyle interventions.
Conclusions: These results offer new insight on potential targets for dementia prevention, a global public health priority. In particular, favorable psychosocial factors and influenza vaccination, undervalued in the scientific debate on dementia prevention, emerged as promising and feasible targets for preventive initiatives. Future research should focus on fine-tuning interventions to promote brain health, exploring their underlying mechanisms, and developing targeted and personalized strategies for specific population subgroups.
DOI: 10.6084/m9.figshare.20509650.v1
title: Raw data of Sentinel-2 satellite images used to map invasive Tamarix in South Africa

description: Raw data of the Sentinel-2 satellite images used in mapping invasive Tamarix genotypes in South Africa.
DOI: 10.6084/m9.figshare.11907216.v1
title: All SATD predictors with normalized coefficients and p-values

description: This table includes all the SATD predictors from commit contents with normalized coefficients and p-values.<br><br>
DOI: 10.6084/m9.figshare.25224380.v1
title: Supplementary Material for: Pediatric patients with eosinophilic esophagitis and their parents identify symptoms as the most important treatment outcome

description: Introduction: Given the lack of data, we aimed to explore which therapeutic endpoints pediatric patients with eosinophilic esophagitis (EoE) and their parents consider to be relevant. 
Methods: We created an educational brochure on EoE and a questionnaire, both of which were content-validated by pediatric patients and parents. Validated documents were sent to 112 patients and parents. They ranked the importance (5 levels) of short‐ (during next 3 months) and long‐term (≥1 year) treatment effect on symptoms, quality of life, endoscopic inflammation, stricture formation, histological inflammation and fibrosis. 
Results: A total of 45 parents and 30 pediatric patients ≥11 years completed the questionnaires. Pediatric patients identified improvement in the following domains as most important in short- and long-term, respectively: symptoms (73% vs. 77%), QoL (53% vs. 57%), histologic inflammation (47% vs. 50%), histologic fibrosis (40% vs. 33%), endoscopic inflammation (47% vs. 40%), and strictures (33% vs. 40%). Parents of children ≥11 years old classified improvement in the following domains as most important in short- and long-term, respectively: symptoms (70% vs. 83%), QoL (63% vs. 80%), histologic inflammation (67% vs. 77%), histologic fibrosis (47% vs. 63%), endoscopic inflammation (77% vs. 80%, and strictures (40% vs. 53%). Agreement between caregiver and children on the short-term importance of treatment outcomes was as follows: symptoms 77%, QoL 40%, histologic inflammation and fibrosis (47% and 43%), endoscopic inflammation and strictures (50% and 40%). 
Conclusion: Pediatric patients and parents attributed most importance to improvement in symptoms and QoL. Agreement between parents and patients regarding therapy goals is limited.
DOI: 10.6084/m9.figshare.28684493.v2
title: Figure 4 source images for hCRAFi-CCR2

description: <b>F</b>igure 4a: Time course images of cultured astrocytes expressing GfaABC1D-hCRAFi-CCR2 or null mutant treated with LPS (10 mg/ml) for 15 hours. At the end of imaging, CCR2 antagonist MK-0812 (4 mM) were added to the cells
DOI: 10.15468/dl.6qm9w8
title: Occurrence Download

description: A dataset containing 13161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spathodea campanulata Beauverd"
 ]
}

 The dataset includes 13161 records from 476 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009482-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15251393
title: BO'LAJAK MUSIQA O'QITUVCHISI FAOLIYATIDA PEDAGOGIKA FANINING AHAMIYATI
DOI: 10.5281/zenodo.15251394
title: BO'LAJAK MUSIQA O'QITUVCHISI FAOLIYATIDA PEDAGOGIKA FANINING AHAMIYATI
DOI: 10.57783/n1d5-b982
title: Researcher Focus AS

description: Adam Sacarny, ajs2102@columbia.edu
description: Adam Sacarny.

Associate Professor of Health Policy and Management at the Columbia University Mailman School of Public Health and a Faculty Research Fellow at the National Bureau of Economic Research.

Research focus, no datasets.
DOI: 10.57783/fk4m-xs74
title: Researcher Focus AW

description: Asher Williams, Aw3571@columbia.edu
description: Asher Williams.

Assistant Professor of Chemical Engineering, Columbia Engineering.

Research focus, no datasets.
DOI: 10.57783/vhjc-an93
title: Research Focus APW

description: Alexa Price-Whelan

Research Scientist at Columbia University in the City of New York

Research focus, no datasets.
DOI: 10.6084/m9.figshare.29574915
title: Maurice Maeterlinck’s ‘The Tragic in Daily Life’: a video essay

description: This video essay offers a methodology aimed at making historical figures from theatre and performance relevant to contemporary studies, practice, and training. It uses Maurice Maeterlinck’s essay ‘The Tragedy in Daily Life’ as a case-study to demonstrate how this contemporaneity is achieved by i) using fragments from the essay as a stimulus for generating performance material and (ii) transforming a key concept, idea, or theme into an instance of actor training. An accompanying Research Statement contextualises the project.