cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pvg2ar
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oncidium toachicum Dodson"
 ]
}

 The dataset includes 37 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052267-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fd7v59
title: Occurrence Download

description: A dataset containing 3038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eudyptes chrysocome (J.R.Forster, 1781))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3038 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295750-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5h8vh2
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthocarpus rupestris A.S.George"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0296081-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkbev7
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-103.08196 24.34773,-97.86152 24.34773,-97.86152 27.99893,-103.08196 27.99893,-103.08196 24.34773))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coryphantha neglecta L.Bremer"
 ]
}

 The dataset includes 80 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005622-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ky88qk
title: Occurrence Download

description: A dataset listing the 13900 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 {
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations)",
 "StateProvince is one of (north carolina)"
 ]
 }
 ]
}

 The dataset's 13900 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052271-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e846s7
title: Occurrence Download

description: A dataset containing 51589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chloephaga picta (J.F.Gmelin, 1789))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 51589 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295748-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xu8r7v
title: Occurrence Download

description: A dataset listing the 41 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample)",
 "Geometry POLYGON((3.51558 50.3424,3.79121 50.3424,3.79121 50.48115,3.51558 50.48115,3.51558 50.3424))",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (NT, VU, EN, CR)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 41 records were derived from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297017-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6w3z9
title: Occurrence Download

description: A dataset containing 104523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-1.79829 51.04908,-1.90612 51.05867,-1.9776 51.05109,-2.03363 51.03121,-2.0513 51.01173,-2.03001 50.98592,-2.00735 50.99321,-1.98861 50.98865,-1.98381 50.97879,-1.9918 50.97007,-1.91934 50.95422,-1.88673 50.94938,-1.85603 50.96241,-1.81643 50.97971,-1.77428 50.97664,-1.75943 51.00375,-1.76771 51.03256,-1.79829 51.04908))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2001-2022"
 ]
}

 The dataset includes 104523 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033582-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.quk4qd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oncidium trachycaulon Schltr."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052268-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dfrxck
title: Occurrence Download

description: A dataset containing 15136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sambucus canadensis L.",
 "Year is greater than or equal to 1981",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15136 records from 223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295764-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edadd4
title: Occurrence Download

description: A dataset containing 6799510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 "TaxonKey is Asteraceae"
 ]
}

 The dataset includes 6799510 records from 384 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295989-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7hk8m
title: Occurrence Download

description: A dataset containing 643 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Medicago lessingii Fisch. & C.A.Mey. ex Kar."
 ]
}

 The dataset includes 643 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033565-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hnzqs3
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oncidium trimorion (Königer) M.W.Chase & N.H.Williams"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052269-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pv39b3
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Procapra picticaudata Hodgson, 1846"
 ]
}

 The dataset includes 34 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297026-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q95ab3
title: Occurrence Download

description: A dataset containing 5995 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Gambia",
 "OccurrenceStatus is Present",
 "TaxonKey is Necrosyrtes monachus (Temminck, 1823)"
 ]
}

 The dataset includes 5995 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0285333-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2e3w64
title: Occurrence Download

description: A dataset containing 10241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ziziphus jujuba Mill.",
 "Year is greater than or equal to 1981",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10241 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295751-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55dydb
title: Occurrence Download

description: A dataset containing 10695209 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geometridae"
 ]
}

 The dataset includes 10695209 records from 1843 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033622-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebt4wv
title: Occurrence Download

description: A dataset containing 36323616 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is South Africa"
 ]
}

 The dataset includes 36323616 records from 2103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016049-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.28387799.v1
title: Supporting data for "Interpreting complex ecological patterns and processes across differentscales using Artificial Intelligence"

description: This thesis bridges the gap between field observations and the empirical understanding of ecological systems by applying AI models at different spatial scales and hierarchical levels to study ecological complexity. The detailed implementation, source code and demo dataset are included in dedicated folders for each chapter.Firstly, a Python package HSC3D, was developed to quantify habitat structural complexity (HSC) at the community level. Built with machine learning algorithms and novel, scale-invariant metrics, this package provides more precise, scale-invariant representations of HSC than traditional approaches, which can be applied to a variety of habitats in different ecosystems. Secondly, at the population level, deep learning (DL) models were benchmarked to inform the best practices in quantifying distribution patterns of intertidal mussels over large spatial scales. By classifying and segmenting mussels at the pixel level, these DL models reduced both false positive samples and user workload, providing an efficient and accurate transferable approach for large scale population surveys. DL models, in combination with novel species annotation strategies, were applied to address a perennial challenge in the identification of populations of invasive mussels from natural populations. This methodology was also adapted for use on mobile phones, allowing users to conduct <i>in-situ</i> surveys and <i>post-hoc</i> analysis, and can be modified for broad accessibility, facilitating immediate application in ecological fieldwork. Lastly, extending to the individual level, explainable AI techniques were employed in the detection of subtidal sea cucumbers. By visualising morphological features important for model predictions, XAI verified that AI decisions align with biologically meaningful traits, thus empowering transparent, individual-based assessments that can also be generalised to other ecosystems.
DOI: 10.6084/m9.figshare.25272262.v1
title: The protein sequences of 215 insects.

description: The protein sequences of 215 insects used in the identification of the HGT-aquired genes.
DOI: 10.6084/m9.figshare.26661463.v1
title: Data for "Synergistic effects of climate and urbanisation on the diet of a globally near threatened subtropical falcon" published in Ecology and Evolution

description: Data set to accompany "Synergistic effects of climate and urbanisation on the diet of a globally near threatened subtropical falcon" published in Ecology and Evolution.
DOI: 10.6084/m9.figshare.14447139.v1
title: Acanthodian dental development and the origin of gnathostome dentitions analysis files

description: MATRIX.nex - phylogenetic data matrix<br>Beast2.xml - BEAST2 xml file for tree search<br><br>mb.nex - mrBayes file<br>trees.trees - tree distribution from beast2 analysis, outgroup removed. This is also the input for the reconstructions<br>mb_timescaled.trees - mrbayes trees, burnin removed, timescaled in R. Input for reconstruction analysis.<br>reconstructions_beast_sym.xml - Beast1 file for ancestral state reconstructions on trees.trees. Symmetrical model<br><br>recontructions_beast_asym.xml - Beast1 file for ancestral state reconstructions on trees.trees. Asymmetrical model<br><br>reconstructions_mb_sym.xml - Beast1 file for ancestral state reconstructions on mb_timescaled.trees. Symmetrical model<br><br>R scripts.zip - R scripts for extracting information from the ancestral state reconstructions. See Readme in folder for details.
DOI: 10.6084/m9.figshare.25495122.v1
title: Additional file 1 of Bioinformatics integration reveals key genes associated with mitophagy in myocardial ischemia-reperfusion injury

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.9918257.v2
title: Knee Pain 1226 subjects

description: Data on knee pain and osteoarthritis among Malaysian older people
DOI: 10.17632/vcj5rzxzw4
title: Roadway Safety Data Integrator (RSDI) Tool & Integrated Highway Safety Information System (HSIS) Datasets

description: The Highway Safety Information System (HSIS) is a database that maintains crash data, roadway inventory, and traffic volume data for several US states. It is an excellent source of data to highway safety research and can be used to investigate many research questions. However, to prepare an analysis-ready roadway safety dataset based on the HSIS or any databases that store the data in multiple different subsets and follow linear referencing, the researchers should integrate multiple datasets, merge or unmerge and remove certain inconsistent records, and finally clean the dataset. The HSIS staff is usually accommodating and eager to help, but sometimes the nature of data needs is complicated and laborious. A tool named Roadway Safety Data Integrator (RSDI) was developed for combining, segmenting, and selecting homogeneous HSIS roadway segments and also crash assignment by desired crash fields (e.g., crash severity or type). The RSDI tool can be helpful for integrating different safety-related datasets such as roadway inventory (including grade, curve, and other subsets), traffic volume, and crash data; also, it can do required segmentation and identify the homogeneous roadway segments over the desired years of study that are the basis for development and calibration of the HSM predictive models. The RSDI tool can be used for similar purposes and not only limited to the HSIS data. It can be used for segmentation and finding homogeneous segments of any datasets that follow linear referencing. The data consists of the following items: - The RSDI tool and its guide - Integrated and raw HSIS data from states of Illinois (R2U: 2005-10) and Washington (R2U: 2010-15) R2U: Rural two-lane, two-way roads
DOI: 10.6084/m9.figshare.17049323.v1
title: Knowledge Search, Knowledge Integration and Enterprise Breakthrough Innovation

description: Enterprises acquire heterogeneous knowledge through external knowledge search and adapt to the change of external environment, which is of great significance to enterprise breakthrough innovation. This paper takes the innovation ecosystem as the boundary of the research paradigm. Based on innovation ecosystem theory, knowledge management theory and enterprise innovation theory, this paper constructs a moderated mediation model of the enterprise knowledge search, knowledge integration and breakthrough innovation under the characteristics of innovation ecosystem network. This model is tested on the survey data of 344 technology enterprise and manufacturing industries including R&D departments in the Beijing-Tianjin-Hebei region.
DOI: 10.6084/m9.figshare.27610395.v1
title: Unveiling Cas8 dynamics and regulation in a transposon-encoded Cascade-TniQ Complex

description: We present detailed structural models of the RNA- and DNA-bound Cascade-TniQ complex, as described by Patel et al. in <i>“Unveiling Cas8 Dynamics and Regulation in a Transposon-Encoded Cascade-TniQ Complex.”</i> Four primary structural models are included: the RNA-bound complex in both open and closed conformations of the Cas8 bundle, and the DNA-bound complex also exhibiting these two states. To facilitate visualization, a VMD state file is provided, allowing users to easily view the structural data.For comparative purposes, we also include the previously published cryo-EM maps of the RNA-bound (EMD-20350) and DNA-bound (EMD-20351) Cascade-TniQ complexes, as reported by Halpin-Healy et al. in <i>“Structural Basis of DNA Targeting by a Transposon-Encoded CRISPR–Cas System”</i> (<i>Nature</i> 577, 271–274, 2020). These cryo-EM maps display low resolution in the Cas8 bundle region, underscoring the importance of the newly provided models. We advise the use of the software Chimera X for the visualization of the Cas8 bundle and other low-resolution regions in the Cryo-EM maps. The provided files include:<b>rna_hh_open.pdb</b>: RNA-bound Cascade-TniQ complex in an open conformation of the Cas8 bundle.<b>rna_hh_closed.pdb</b>: RNA-bound Cascade-TniQ complex in a closed conformation of the Cas8 bundle.<b>dna_hh_open.pdb</b>: DNA-bound Cascade-TniQ complex in an open conformation of the Cas8 bundle.<b>dna_hh_closed.pdb</b>: DNA-bound Cascade-TniQ complex in a closed conformation of the Cas8 bundle.<b>emd_20350.map</b>: Cryo-EM map of the RNA-bound Cascade-TniQ complex (Halpin-Healy et al., <i>Nature</i>, 2020).<b>emd_20351.map</b>: Cryo-EM map of the DNA-bound Cascade-TniQ complex (Halpin-Healy et al., <i>Nature</i>, 2020).<b>new-state-final-2.vmd</b>: VMD state file for loading and visualizing the structural data, accessible through the command "vmd -e new-state-final-2.vmd". This state file applies the color schemes used in Patel et al.'s figures for consistency.
DOI: 10.6084/m9.figshare.28560665.v1
title: Data for green hotels paper

description: Green certification can help mitigate information asymmetry issue that hinders adoption of green technologies in hotel industry. This paper determines the willingness to pay of Vietnamese guests for hotels with certification using a discrete choice experiment. The results indicate that tourists in Vietnam tend to pay around 16% premium for hotels with green certification, reflecting Vietnamese consumers’ growing concern for the environmental protection. The findings also reveal that the demand for hotels with green certification are less elastic than the regular hotels, suggesting loyalty to hotels with green certification. Additionally, the counterfactual experiments indicate that requiring all regular hotels to achieve a medium level of green certification would increase their market share by around 13 percentage point, while removing all certification of green hotels would decrease their market share by around 14 percentage point. These insights provide valuable and timely support for Vietnamese government as it gathers information for the implementation of a green certification program in the hotel industry.
DOI: 10.15468/dl.axpkyw
title: Occurrence Download

description: A dataset containing 2073 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Apeira syringaria (Linnaeus, 1758)"
 ]
}

 The dataset includes 2073 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009416-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/pftdvts575
title: A/H1N1 hemagglutinin antibodies show comparable affinity in vaccine-related Narcolepsy type 1 and control and are unlikely to contribute to pathogenesis

description: data used in figures and tables from paper Sci Rep . 2021 Feb 18;11(1):4063. doi: 10.1038/s41598-021-83543-z.
A/H1N1 hemagglutinin antibodies show comparable affinity in vaccine-related Narcolepsy type 1 and control and are unlikely to contribute to pathogenesis
Alexander Lind #  1 , Ilaria Marzinotto #  2 , Cristina Brigatti  2 , Anita Ramelius  1 , Lorenzo Piemonti  2 , Vito Lampasona  3
Affiliations 1 Department of Clinical Sciences, Clinical Research Center (CRC), Skåne University Hospital SUS, Lund University, Malmö, Sweden. 2 San Raffaele Diabetes Research Institute, IRCCS Ospedale San Raffaele, Via Olgettina 60, 20132, Milan, Italy. 3 San Raffaele Diabetes Research Institute, IRCCS Ospedale San Raffaele, Via Olgettina 60, 20132, Milan, Italy. lampasona.vito@hsr.it. # Contributed equally.
PMID: 33603024 PMCID: PMC7893011 DOI: 10.1038/s41598-021-83543-z
DOI: 10.6084/m9.figshare.10073663.v1
title: Goitrogenic/antithyroidal potential of moringa leaves (Moringa oleifera) and spinach (Spinacia oleracea) of Indian origin on thyroid status in male albino rats

description: Moringa leaves and spinach used as vegetables containing cyanogens and polyphenols having suspected antithyroidal activity; however, detailed studies in this aspect found unavailable. Goitrogenic/antithyroid potentiality of those plant foods of Indian origin was evaluated. To explore the goitrogenic/antithyroid effect of those plant foods cyanogenic glucosides, glucosinolates, thiocyanate and polyphenol content were measured. These plant foods were fed with diet regularly to adult male albino rats for 30 and 60 days respectively, followed by evaluation of morphological and functional status of thyroid,as thyroid gland weight, the activity status of thyroid hormone synthesizing enzymes viz. TPO, Na+-K+-ATPase, deiodinase I, thyroid hormone profiles, thyroid histoarchitecture as well as urinary iodine and thiocyanate. In moringa leaves and spinach fed diet, there was a significant increase in urinary excretion of thiocyanate and iodine, enlargement of thyroid gland along with hypertrophy of thyroid follicles and altered in the activities of thyroid hormone synthesizing enzymes with concomitant changes of thyroid hormone profiles. Effects were more severe in moringa leaves treated group than that of spinach. Biochemical analysis moringa leaves and spinach reveal that those are rich sources of goitrogens and their prolonged consumption gradually developed a relative state of biochemical and morphological hypothyroidism.