cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22012931.v1
title: Evidence for a putative isoprene reductase in Acetobacterium wieringae

description: Supplementary Tables from "Evidence for a putative isoprene reductase in <em>Acetobacterium wieringae</em>". <br> <strong>Table S1:</strong> Average nucleotide identity (ANI) between enriched <em>Comamonas</em> sp. ISORED-1 and close relative genomes available on NCBI and average amino acid identity (AAI) pairwise comparisons. <strong>Table S2:</strong> Average nucleotide identity (ANI) between enriched <em>A. wieringae</em> ISORED-2 and close relative genomes available on NCBI and average amino acid identity (AAI) pairwise comparisons. <strong>Table S3:</strong> Primer sequences used for RT-PCR to amplify the intergenic regions of the putative <em>isr</em> operon. <strong>Table S4:</strong> Annealing temperatures of primer pairs used to amplify the intergenic regions of the putative isoprene operon and their predicted product sizes. <strong>Table S5:</strong> List of complete <em>Acetobacterium</em> genomes used for pangenome analysis with anvi'o. <strong>Table S6:</strong> Summary of shared and unique gene cluster within <em>Acetobacterium</em> genus. Based on an MCL inflation value of 6. <strong>Table S7:</strong> List of 352 unique proteins encoded in the <em>A. wieringae</em> ISORED-2 genome. Shown are NCBI BLASTp results of each protein. <strong>Table S8:</strong> Sequence information of IsrA homologs represented in the phylogenetic tree (Figure 4AB). <strong>Table S9:</strong> Sequence information of clade 9 proteins used in the phylogenetic tree (Figure 4C and Figure S4). <strong>Table S10:</strong> InterProScan results of proteins encoded in the <em>isr</em> operon (VUZ27132.1-VUZ27136.1) and characterized NfnB subunits. <strong>Table S11:</strong> List of <em>Comamonas </em>sp. ISORED-1 proteins identified in the proteomic analysis. <strong>Table S12:</strong> EFI-GNT - Genome Neighbourhood Networks (GNNs) computation results of proteins from the putative <em>isr</em> operon (VUZ27132.1-VUZ27136.1). <br>
DOI: 10.3535/123-dbt-hpm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j52-8z9-fd3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7276493.v2
title: MATLAB code from Variability in life-history switch points across and within populations explained by Adaptive Dynamics.

description: Model implementation
DOI: 10.3535/4mg-5jy-lth
title: †Cymbularia Koken, 1896

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f6k-hld-6nx
title: †Laeogyra Perner, 1903

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j42-l1w-lyv
title: †Chonetes Fischer de Waldheim, 1830

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pfc-wzt-zly
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/cjs6spytj5
title: NMR and Mossbauer studies of core-shell FeCo@C ferromagnetic nanoparticles near the superparamagnetic transition

description: Figures of the paper. Supplementary data. Additional files: more TEM pictures; magnetization reversal of investigated samples (from Table 1).
DOI: 10.17632/ywn4vjpyx4
title: Temperature measurements at different delay after drilling

description: Simple tables showing temperature logs
DOI: 10.3535/fpk-147-bqv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/stg-amf-1qm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/d55k8wgxt5
title: Datasets for Tuning the reactivity of carbon surfaces with oxygen-containing functional groups

description: Oxygen-containing carbons are promising supports and metal-free catalysts for many reactions. However, distinguishing the role of various oxygen functional groups and quantifying and tuning each functionality is still difficult. Here we investigate the role of Brønsted acidic oxygen-containing functional groups by synthesizing a diverse library of materials. By combining acid-catalyzed elimination probe chemistry, comprehensive surface characterizations (XPS, AP-XPS, TPDE-MS), 15N isotopically labeled acetonitrile adsorption coupled with magic-angle spinning nuclear magnetic resonance (MAS NMR), machine learning, and density-functional theory calculations (DFT), we demonstrate that phenolic (-OH) is the main acid site in gas-phase chemistries and unexpectedly Ar/R-carboxylic (-COOH) groups are much less acidic than -OH in the graphitized mesoporous carbon due to electron density delocalization induced by the aromatic rings of graphitic carbon. The methodology can identify acidic sites in oxygenated carbon materials in solid acid catalyst-driven chemistry.
DOI: 10.3535/mbk-ta5-9hb
title: Phoca Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zlb-dyf-emc
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/w4byfgk7zf
title: Supplementary_table_Raw Data

description: Raw data of the manuscript "Pan-Cancer Analyses Revealed the Prognostic and Immunological Role of Cuproptosis-Related Gene MTF1"
DOI: 10.3535/ayw-jx6-a7w
title: limestone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n6n-1qd-f8q
title: †Liospira Ulrich & Scofield, 1897

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5pt-0xf-s95
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fj1-3zk-ref
title: Phoca Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23664273.v1
title: rd16 genotypes_ACD.csv

description: The datasets contain the raw phenotype and genotype data that was used in the R/qtl program to identify 6 new quantitative trait loci (QTL) associated with the anterior chamber depth (ACD) phenotype in mice.
DOI: 10.3535/cr7-4b7-j55
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l62-9j0-2q3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.2010108.v6
title: GRID release 2015-12-14

description: Fifth public release of GRID- Added directorates, programs and institutes from the National Science Foundation- QA tasks to review and fix allocation of Fundref IDs
DOI: 10.17632/kkt999sn7b
title: Three Datasets Reporting Unexpected Events for Everyday Scenarios

description: The three datasets described in this repository were collected from online experiments distributed via Prolific.co participant system. Together, the three datasets comprise 9,720 text responses of unexpected events participants predicted for everyday scenarios such as going shopping or preparing breakfast. Each event was labelled by at least two independent, human raters on their topic or category (relative to their initial scenario), the valence or sentiment of the event, and whether or not the event mentions words related to the goal stated in the initial scenario. We also include summary data from a pre- and post-test conducted in the course of these experiments, as well as the analysis code in the form of Jupyter Notebooks. We provide this data and relevant code for transparency and reproducibility alongside our paper under review (see Quinn, Campbell, and Keane, submitted). The dataset could be useful in training machine learning models on valence/sentiment of everyday unexpected events.
DOI: 10.17632/x7jmxr2497
title: Plasmid map for STAR Protocol

description: This file contains plasmid map and sequence for protocol named“Efficient generation of locus-specific CAR-T cells with CRISPR/cCas12a ” which has been published in STAR Protocol.
DOI: 10.3535/2j2-fl7-h38
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2ra-4ws-a1f
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ljn-cta-exq
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11370693.v1
title: Dried Blood Droplet Images Dataset.

description: This is a dataset of dried blood droplet images which were taken from thirty healthy, recreationally active, non-smoking, males provided written informed consent to take part in the study.<br>Droplet images were recorded using a CASIO EX-Z1000 digital camera in HDR super-macro mode with fixed magnification, with resolution 150px/mm mounted 9cm above a white flat backlight (The Imaging Source DCL/BK.WI 5070/EU). Reflections from other lights in the room were eliminated using screens. As the dried deposits had a tendency to flake or peel, the slides were carefully transferred from the drying chamber and placed directly on top of the backlight. Images were cropped manually to contain one complete droplet per image.<br><br>The experimental protocols (exercise test and blood sampling) were approved by the Nottingham Trent University Human Ethical Review Committee.<br><br>The study conformed to the standard set by the Declaration of Helsinki.<br><br>Informed consent was obtained from all Participants/volunteers. <br>
DOI: 10.17632/kdr3tsz95m
title: Vital role of impaired thyroid- adipose signaling in functional alternation of visceral adipose tissue in the process of obesity

description: Obesity has become a nonnegligible problem over the world, leading to deleterious outcomes like metabolic syndrome, diabetes, and cardiovascular diseases, behind which, the dysfunction of visceral adipose tissue (VAT) played a crucial role in this process. To further understand the possible mechanisms behind this change, we carried out transcriptome sequencing (RNA seq) and assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) on VAT of lean and obese subjects. In the present study, RNA-seq revealed that 2478 genes were upregulated and 402 genes were downregulated in VAT from obese individuals. Through GO-p and KEGG analysis, we found that the downregulated genes were enriched in pathways concerning glucose metabolism, lipid metabolism and mitochondrial function, resembling the alternation occurred in hypothyroidism. Thyroid hormone, as the key regulator of energy metabolism, exerts vital effects on adipose tissue by altering these pathways, and through ATAC-seq, we found nine down-regulated genes involved in the target pathways with chromatin open region containing thyroid hormone receptor related binding sites. Thus, we speculated that the obesity related alternations in VAT may be associated with the defects of thyroid hormone signaling on these target genes, demonstrated as mitochondrial dysfunction, decreased fatty-acid beta oxidation, and impaired glucose utility, leading to obesity related complications.
RNA-seq and ATAC-seq results are partially uploaded, contact the correspond author for further information
DOI: 10.3535/cnc-042-7dl
title: Ophioceras

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gbb-c4c-5la
title: Favosites polymorpha var. tuberasiramasa Goldfuss

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/rcxbjzk4d8
title: Dataset1

description: Individual practice
DOI: 10.3535/4mp-dn8-ch4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6aq-z1l-sn8
title: †Pycnomphalus Lindström, 1884

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22256626.v1
title: NPP-VIIRS-like nighttime light data (1992-2020) in Yangtze River Delta

description: The NPP-VIIRS-like nightime light data from 1992 to 2020 covering the Yangtze River Delta . The night light time series from 1992 to 2011 was obtained by converting DMSP-OLS to NPP-VIIRS. <br>
DOI: 10.17632/g8n53k9kkb
title: Prognostic Significance of CD200 Protein Expression and its Correlation with COX-2 in Cutaneous Melanoma

description: Supplementary Figure 1. Expression of CD200 and COX-2 in melanoma tissue. Immunohistochemical staining for (A) CD200 (X 100) and (B) COX-2 (X 40) in melanoma tissue. Paraffin-embedded sections were immunostained with anti-CD200 (R&D systems, Minneapolis, MN, USA; 1:5000) and anti-COX-2 (Neomarkers, CA, USA; 1:50). Double immunofluorescence staining in melanoma tissue of (C) melan-A and CD200 (melan-A, red; CD200, green), (D) melan-A and COX-2 (melan A, red; COX-2, green), and (E) CD200 and COX-2 (CD200, green; COX-2, red). Double-positive cells are indicated by the yellow signals. (F) Correlation between CD200 and COX-2 protein expression in cutaneous melanoma. Supplementary Figure 2. Progression-free survivals depending on (A) CD200 (B) COX-2 expression in melanoma patients. COX-2, cyclooxygenase-2 Supplementary Figure 3. Effects of COX-2 inhibitor on the expression of CD200 in melanoma cell line. (A, B) Western blotting analysis to evaluate the effect of COX-2 inhibitor on the level of CD200 in Human BRAFV600E A375 melanoma cell. A375 cells were treated with the selective COX-2 inhibitor, celecoxib at different doses. CD200 was downregulated by celecoxib at dose from 60 μM. *p &lt; 0.05, **p &lt; 0.01.
DOI: 10.17632/jy9nr475gb
title: Infantile Transient Smooth Muscle Contraction of the Skin: Video

description: Video of infantile transient smooth muscle contraction of the skin in a one-month-old girl.
DOI: 10.3535/lwy-pe2-6y9
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xwb-es7-n8v
title: Paleofavosites ignotus Klaamann

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/b8pnzp2y6c
title: raw data

description: Raw data of PCR-MALDI-TOF MS of all the samples
DOI: 10.3535/582-86k-mtc
title: Hematite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cat-t23-fh5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23297837.v1
title: Bacterial protein sandwich ELISAs.docx doi: <strong>10.6084/m9.figshare.23297837</strong>

description: The aim of this study was to make universal chimeric conjugates to react with both avian and mammalian immunoglobulins in enzyme-linked immunosorbent assays (ELISAs). The periodate method was used in the conjugation process of cross-linking horseradish peroxidase to immunoglobulin-binding proteins (IBP) including staphylococcal protein A (SpA), streptococcal protein G (SpG) and peptostreptococcal protein L (SpL). By mixing up these three conjugates another four hybrid protein conjugates were created including protein LA (SpLA), protein LG (SpLG), protein AG (SpAG) and protein LAG (PLAG). Thirty- five ELISAs were standardized by a probabilistic combination of these immunoreagents. By using a panel of mainly mammalian immunoglobulins their reproducibility was checked by the determination of coefficient of variations (CV) for each one of the IgG-IBP binding. The source of immunoglobulins was their purification by affinity chromatography using a commercially available kit (PURE-1A).
DOI: 10.17632/2jmvwsybyb
title: Supplement：Widely targeted metabolomics analysis to reveal the metabolite profiles of the medicinal and food homologous Rubus chingii Hu

description: Widely targeted metabolomics analysis to reveal the metabolite profiles of the medicinal and food homologous Rubus chingii Hu
DOI: 10.3535/12p-jmt-5ge
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pgw-lbb-bsy
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20480292.v1
title: NIR data - aggregated into SIMCA item

description: Characterization of refined marc distillates with alternative oak 4 products using different analytical approaches - Near Infrared data: - SIMCA file also including hard data, i.e. Brucker absorbance spectra - Base Dataset exported to excel
DOI: 10.3535/aaj-vnt-tlf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3519833.v1
title: Appendix C. Path analysis output of total effects using Shannon’s diversity index as a measure of vegetation structural complexity.

description: Path analysis output of total effects using Shannon’s diversity index as a measure of vegetation structural complexity.
DOI: 10.6084/m9.figshare.963183.v2
title: Replication files for "Between Ballots and Bullets: Executive Competitiveness and Civil War Incidence, 1976-2000"

description: <strong>Abstract</strong> Civil War is the most important form of collective violence of our time. Although recent research has yielded some determining elements to civil war, the influence of political factors on internal conflicts remains disputed. This study analyzes, by means of statistics regression, the correlation between the competitiveness in the Executive Branch and the incidence of civil war from 1976 to 2000. The findings indicate that both single-candidate and multi-party elections reduce the incidence of civil war. Furthermore, the results lend support to the hypotheses put forward by recent literature that mountainous terrain, large population, centralized political system, and the existence of former conflicts significantly heighten the risk of incidence of civil war. Keywords: civil wars, executive branch, political regimes, elections
DOI: 10.17632/c78yrgwnzm
title: Data for concrete and abstract word processing in deep dyslexia

description: Data for concrete and abstract word processing in deep dyslexia
DOI: 10.3535/0tz-g9v-p23
title: Favosites polymorpha var. tuberasiramasa Goldfuss

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8rh-h8n-09h
title: †Hallopora Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hg3-7mn-f3e
title: Dolostone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kgl-2d4-7nr
title: Plantae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/29hd3mdfyc
title: Material Properties of Human Lumbar Intervertebral Discs Across Strain Rates - Experimental Data

description: Data from axial compression experiments conducted on human intervertebral discs at a range of strain rates. The methods and discussion of this data is included in the paper titled "Material Properties of Human Lumbar Intervertebral Discs Across Strain Rates"
DOI: 10.17632/r2n58xg54s
title: Nuclear-localized HKDC1 promotes hepatocellular carcinoma through phosphorylating RBBP5 to upregulate H3K4me3

description: Source data of western blot in the study.
DOI: 10.3535/4m2-wy2-6fs
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n67-003-9bm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hbe-s40-nx4
title: †Schizambon Walcott, 1884

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rya-pff-5cw
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/9pv4z6dns9
title: covid-19 and colorectal cancer

description: We describe and suggest the treatment modality of adjuvant and advanced therapies for colorectal cancer during covid-19 era.
DOI: 10.3535/v9g-2st-c7s
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yqa-2n6-y6b
title: Calymene

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27323784.v1
title: The various gaseous nitrogen fluxes in an urban wetland in eastern China

description: This is the land-surface exchange fluxes data of various nitrogen in an urban wetland based on in-situ flux observation. The fluxes of nitric oxide (NO), nitrogen dioxide (NO<sub>2</sub>), ammonia (NH<sub>3</sub>), and nitrous oxide (N<sub>2</sub>O) were observed in each seasons using the dynamic flux chamber in mud and waterfront areas of an urban wetland in eastern China.
DOI: 10.3535/3qp-v7n-vm6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4qx-z41-69z
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1rs-1rh-x92
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q6e-2fy-98d
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3144553.v1
title: The PLETHORA gene regulatory network guides growth and cell differentiation in Arabidopsis roots

description: This is the code used in the study by Santuari et al., 2016, The Plant Cell.Please refer to the Supplemental Data for additional details about the data and the methods used.
DOI: 10.17632/7894wb6yxh
title: B cell alterations during BAFF inhibition with belimumab in SLE

description: Mass cytometry data, systemic lupus erythematosus patients at Karolinska Universitetssjukhuset at the start of belimumab treatment and follow-up time-points. Generated on a CyTOF2 machine. In run1, B cells were gated for CD20 (positive) and CD3 (negative) and CD4 T cells for CD20 (negative), CD3 (positive) and CD4 (positive). The data for both runs has been bead normalised.
DOI: 10.3535/34k-622-5l3
title: Graptolithina Bronn, 1849

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/msa-gg7-91k
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kbm-fxj-b4s
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/p9fsjcjsfr
title: Singularity encounter animations

description: Animations of encountering singularities of a 6-axis serial robot.  Included encounters are isolated overhead and wrist singularities, coincident overhead and wrist singularities and the wrist singularity near maximum extension of the robot arm.
DOI: 10.3535/5m6-bqy-j5b
title: Favositidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zzw-scb-3qy
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.