cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.r3addc
title: Occurrence Download

description: A dataset containing 314858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year 2000-2020",
 "Geometry POLYGON((104 18,118 18,118 27,104 27,104 18))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 314858 records from 407 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018860-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-248164
title: Royalty unveiled, 2011

description: [description english/roman)] Glenda Williams Goodson. Royalty unveiled: women trailblazers in Church of God in Christ international missions, 1920-1970. Lancaster, Texas: HCM Publishing, 2011.
DOI: 10.15468/dl.wgxgqa
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stenocereus chrysocarpus Sánchez-Mej."
 ]
}

 The dataset includes 43 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002959-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwz7cg
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senecio martirensis T.M.Barkley"
 ]
}

 The dataset includes 61 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0124001-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfs78j
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clypeola bruhnsii Gruner"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042203-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-248031
title: I’m so glad I’m sanctified, 2005

description: [description english/roman)] Glenda Williams Goodson. I'm so glad I'm sanctified!: wisdom, quotes and treasures from Church of God in Christ pioneering women, 1911-1975. Lancaster, Texas: HCM Publishing, 2005.
DOI: 10.15468/dl.3gmnbb
title: Occurrence Download

description: A dataset containing 321804 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is Asia",
 "Country is China",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 321804 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046559-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swb2t9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Decaptera trifida Turcz."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042244-220831081235567/datasets/export for details.
DOI: 10.15468/dl.x8jh2b
title: Occurrence Download

description: A dataset containing 1842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lynx Kerr, 1792"
 ]
}

 The dataset includes 1842 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303215-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-247927
title: Women's handbook of organization and procedure, COGIC, 1989

description: [description english/roman)] McGlothen, Mattie. Women's handbook of organization and procedure. Revised edition compiled and supplemented by Madge Cyars and Frances Sipes Curtis. [s.l.]: Church of God in Christ Publishing House, 1989, reprinted 1994.
DOI: 10.15468/dl.n2h9vz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hormathophylla spathulata (Stephan) Cullen & T.R.Dudley"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042273-220831081235567/datasets/export for details.
DOI: 10.15468/dl.ritdxe
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Axonopus scoparius (Flüggé) Kuhlm."
 ]
}

 The dataset includes 135 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004208-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-248140
title: Royalty unveiled, 2011

description: [description english/roman)] Glenda Williams Goodson. Royalty unveiled: women trailblazers in Church of God in Christ international missions, 1920-1970. Lancaster, Texas: HCM Publishing, 2011.
DOI: 10.15468/dl.fh836e
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gobiidae",
 "Country is Canada",
 "StateProvince is Quebec",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 2 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303222-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mw9zu4
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremolobus pubescens Hook."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042246-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wsud3a
title: Occurrence Download

description: A dataset containing 2472 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chionomys nivalis (Martins, 1842)"
 ]
}

 The dataset includes 2472 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004208-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-247911
title: Women's handbook of organization and procedure, COGIC, 1989

description: [description english/roman)] McGlothen, Mattie. Women's handbook of organization and procedure. Revised edition compiled and supplemented by Madge Cyars and Frances Sipes Curtis. [s.l.]: Church of God in Christ Publishing House, 1989, reprinted 1994.
DOI: 10.15468/dl.y5w9yx
title: Occurrence Download

description: A dataset containing 80030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "MediaType is Image",
 "ScientificName is Trifolium pratense L."
 ]
}

 The dataset includes 80030 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303234-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4yemrg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alyssum petalodes DC."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042250-220831081235567/datasets/export for details.
DOI: 10.25549/pcra-c14-248174
title: Royalty unveiled, 2011

description: [description english/roman)] Glenda Williams Goodson. Royalty unveiled: women trailblazers in Church of God in Christ international missions, 1920-1970. Lancaster, Texas: HCM Publishing, 2011.
DOI: 10.15468/dl.cltt50
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Xenophthalmichthys danae Regan, 1925"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004208-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.egsf7g
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scaphosepalum triceratops Luer & Andreetta"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002961-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-21514
title: Minute book no. 24, AoG GB, OMC, July 1977 - Feb. 1981

description: [description english/roman)] Assemblies of God [AoG] OMC minute book No. 24, 210 pages of minutes. All matters relating to Assemblies of God [AoG] OMC council member appointments, decisions, policy and missionary personnel issues.
DOI: 10.15468/dl.jepv3b
title: Occurrence Download

description: A dataset containing 10944 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "MediaType is Image",
 "ScientificName is Taxus baccata L."
 ]
}

 The dataset includes 10944 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303221-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4xnwn
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coryphaenoides orthogrammus (Smith & Radcliffe, 1912)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042292-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kd4sdx
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trimezia speciosa (Chukr & A.Gil) Christenh. & Byng"
 ]
}

 The dataset includes 54 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002960-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-21574
title: Minute book no. 24, AoG GB, OMC, July 1977 - Feb. 1981

description: [description english/roman)] Assemblies of God [AoG] OMC minute book No. 24, 210 pages of minutes. All matters relating to Assemblies of God [AoG] OMC council member appointments, decisions, policy and missionary personnel issues.
DOI: 10.25919/n3mm-5731
title: NVCL Workshop Materials: Gruyere Gold Deposit (15EIS001)

description: This is a collection of workshop materials from an AuScope NVCL HyLogger Workshop held in Kalgoorlie in February 2023. It includes a HyLogger3 TSG dataset for drill hole 15EIS001, as well as the workshop presentation slides. This drill hole is from the world-class Gruyere gold deposit and contains three wedges, and so was scanned as three datasets. The dataset included here (15EIS001_15EIS001_wedge3_merge.tsg) is the dataset generated for the workshop and is a merged TSG file which includes the data from the 15EIS001.tsg (0-221.5 m) and 15EIS001_W3.tsg (495.5-1701.8m) both of which are available through the AuScope Discovery portal. The merged TSG file also contains an imported geological log as well as gold assay data. The series of slide decks provide an introduction to the NVCL, Hylogger data, and data access, background theory on hyperspectral mineralogy, geological context for the drill holl, and screenshots which provide a walk through of the dataset.
DOI: 10.15468/dl.mij2gx
title: Occurrence Download

description: A dataset containing 748 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambystoma mexicanum (Shaw & Nodder, 1798)"
 ]
}

 The dataset includes 748 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004208-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmuj3s
title: Occurrence Download

description: A dataset containing 48637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pyrus communis L.",
 "Year is greater than or equal to 1981",
 "HasCoordinate is true"
 ]
}

 The dataset includes 48637 records from 550 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303226-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdckga
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum orientale (L.) Mill."
 ]
}

 The dataset includes 216 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042293-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-248014
title: I’m so glad I’m sanctified, 2005

description: [description english/roman)] Glenda Williams Goodson. I'm so glad I'm sanctified!: wisdom, quotes and treasures from Church of God in Christ pioneering women, 1911-1975. Lancaster, Texas: HCM Publishing, 2005.
DOI: 10.15468/dl.gqgxkm
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichilia amapaensis T.D.Penn."
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002962-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j67a3d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Descurainia canescens var. appendiculatum (Griseb.) Hosseus"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042177-220831081235567/datasets/export for details.
DOI: 10.15468/dl.q6fwhy
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Telipogon caulescens Dressler"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002963-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vd0ams
title: Occurrence Download

description: A dataset containing 6242 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Natural history museum data on Canadian Arctic marine benthos"
 ]
}

 The dataset includes 6242 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004208-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-247912
title: Women's handbook of organization and procedure, COGIC, 1989

description: [description english/roman)] McGlothen, Mattie. Women's handbook of organization and procedure. Revised edition compiled and supplemented by Madge Cyars and Frances Sipes Curtis. [s.l.]: Church of God in Christ Publishing House, 1989, reprinted 1994.
DOI: 10.15468/dl.3kfcg9
title: Occurrence Download

description: A dataset containing 14123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "MediaType is Image",
 "ScientificName is Trifolium dubium Sibth."
 ]
}

 The dataset includes 14123 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0303230-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjenju
title: Occurrence Download

description: A dataset containing 278842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lamium album L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 278842 records from 1088 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042183-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/kmt8tx7gh6.1
title: NeoMHCI Training and Evaluation Data

description: All training and evaluation data used in the NeoMHCI study.

All code is freely available at https://github.com/ZhuLab-Fudan/NeoMHCI.

------------------------------------------------------
Train Data:

1. EL_train.zip:
 Contains all eluted ligand data used for training the five-fold cross-validation model.
 - EL2020_A.txt: Corresponds to the EL2020_A dataset mentioned in the article.
 - EL2020_B.txt: Corresponds to the EL2020_B dataset mentioned in the article.
 Combining the data from these two files constitutes the EL2020_C dataset mentioned in the article.

2. NE_train.zip
 Contains all neoepitope data used during the fine-tuning process for the immunogenicity prediction task.
 - NE2023.txt: Corresponds to the NE2023 dataset mentioned in the article.
 - NE2023_list.json: A candidate pool constructed from all wild-type sequences in NE2023.
 - IN2023: Corresponds to the IN2023 dataset mentioned in the article, used as a validation set during the fine-tuning process.

------------------------------------------------------
Test Data:

3. EL_test.zip
 Contains the test set for ligand presentation prediction, along with the prediction scores of NeoMHCI and other comparison methods.
 - IM2020.csv: Corresponds to the IM2020 test set mentioned in the article.
 - IS2020.csv: Corresponds to the IS2020 test set mentioned in the article.

4. NE_test.zip
 Contains the neoepitope test set for immunogenicity prediction, along with the prediction scores of NeoMHCI and other comparison methods.
 - BM2023.csv: Corresponds to the BM2023 test set mentioned in the article.
 - PM2018_data.txt: Corresponds to the PM2018 test set mentioned in the article. It includes `mutation_id` for mutation number, `patient_id` for patient number, `epitope` indicating whether the mutation is immunogenic, `tpm` for the gene expression level of the mutation, `cell_line` for the renamed multi-allele combination of the patient, with the specific correspondence in PM2018_allelelist. `pepseq` represents the specific sequence of the mutation. Each mutation is represented by all 8-11mer slices containing the mutation site, with the highest prediction value among all slices representing the prediction score for that mutation.
 - PM2018_records.csv: Records the prediction scores of each method for every mutation with TPM&gt;0.
 - PM2018_allelelist: Records the multi-allele combinations expressed by each patient in PM2018.

------------------------------------------------------
Common:

- allelelist: Records the specific MHC-I molecule combinations corresponding to the names of the multi-allele combinations (cell line) used in the MA data.
- MHC_pseudo.dat: Records the 34-mer pseudo sequences of MHC-I molecules.
- eval.py: Evaluation script used to compile various metrics from the records of each test set.
DOI: 10.17632/kmt8tx7gh6.2
title: NeoMHCI Training and Evaluation Data

description: All training and evaluation data used in the NeoMHCI study.

All code is freely available at https://github.com/ZhuLab-Fudan/NeoMHCI.

------------------------------------------------------
Train Data:

1. EL_train.zip:
 Contains all eluted ligand data used for training the five-fold cross-validation model.
 - EL2020_A.txt: Corresponds to the EL2020_A dataset mentioned in the article.
 - EL2020_B.txt: Corresponds to the EL2020_B dataset mentioned in the article.
 Combining the data from these two files constitutes the EL2020_C dataset mentioned in the article.

2. NE_train.zip
 Contains all neoepitope data used during the fine-tuning process for the immunogenicity prediction task.
 - NE2023.txt: Corresponds to the NE2023 dataset mentioned in the article.
 - NE2023_list.json: A candidate pool constructed from all wild-type sequences in NE2023.
 - IN2023: Corresponds to the IN2023 dataset mentioned in the article, used as a validation set during the fine-tuning process.

------------------------------------------------------
Test Data:

3. EL_test.zip
 Contains the test set for ligand presentation prediction, along with the prediction scores of NeoMHCI and other comparison methods.
 - IM2020.csv: Corresponds to the IM2020 test set mentioned in the article.
 - IS2020.csv: Corresponds to the IS2020 test set mentioned in the article.

4. NE_test.zip
 Contains the neoepitope test set for immunogenicity prediction, along with the prediction scores of NeoMHCI and other comparison methods.
 - BM2023.csv: Corresponds to the BM2023 test set mentioned in the article.
 - COVID-19.txt: Corresponds to the COVID-19 test set mentioned in the article.
 - PM2018_data.txt: Corresponds to the PM2018 test set mentioned in the article. It includes `mutation_id` for mutation number, `patient_id` for patient number, `epitope` indicating whether the mutation is immunogenic, `tpm` for the gene expression level of the mutation, `cell_line` for the renamed multi-allele combination of the patient, with the specific correspondence in PM2018_allelelist. `pepseq` represents the specific sequence of the mutation. Each mutation is represented by all 8-11mer slices containing the mutation site, with the highest prediction value among all slices representing the prediction score for that mutation.
 - PM2018_records.csv: Records the prediction scores of each method for every mutation with TPM&gt;0.
 - PM2018_allelelist: Records the multi-allele combinations expressed by each patient in PM2018.
 - RV2023_data.txt, RV2023_records.txt, RV2023_allelelist: Same as PM2018

------------------------------------------------------
Common:

- allelelist: Records the specific MHC-I molecule combinations corresponding to the names of the multi-allele combinations (cell line) used in the MA data.
- MHC_pseudo.dat: Records the 34-mer pseudo sequences of MHC-I molecules.
- eval.py: Evaluation script used to compile various metrics from the records of each test set.