cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2g9p0/3
title: Individual microsatellite genotypes

description: The first line provides the header, sample ID and locus name. Each locus is named twice, once for each allele. The following lines provides the genotypes for each individual.
DOI: 10.5061/dryad.384nf/1
title: Phenotypic data on flowering time, size, and relative fitness

description: See read me file.
DOI: 10.5061/dryad.3b7g5/1
title: MAdata

description: Data on wing shape gathered from mutatation accumulation lines, and controls.
DOI: 10.5061/dryad.42ph0/7
title: Hopkins-SupplementaryTable6

description: See Hopkins_tables-description.pdf for explanation of table
DOI: 10.5061/dryad.42ph0/8
title: Hopkins-SupplementaryTable7

description: See Hopkins_tables-description.pdf for explanation of table
DOI: 10.5061/dryad.46h6j/2
title: DemogDatabase_Sirena

description: Capture and demographic data for site Sirena
DOI: 10.5061/dryad.46h6j/3
title: Km23_Genotype_Data

description: Microsatellite genotype data for site Km23
DOI: 10.5061/dryad.46h6j/4
title: Sirena_Genotype_Data

description: Genotype data file for the site Sirena
DOI: 10.5061/dryad.46h6j/5
title: RCode_GroupRelatedness

description: Script for calculating the relatedness of each individual to all other individuals within a social group.  Uses output from the program ML Relate (i.e. relatedness values in table format)
DOI: 10.5061/dryad.64835/1
title: Temeles et al Heliconia Bihai Population Data

description: Temeles et al Heliconia bihai floral trait and seed set data
DOI: 10.5061/dryad.64835/2
title: Temeles et al Heliconia caribaea red morph population data

description: Temeles et al Heliconia caribaea red morph population data
DOI: 10.5061/dryad.64835/3
title: Temeles et al Heliconia caribaea yellow morph population data

description: Temeles et al Heliconia caribaea yellow morph floral trait and seed set data
DOI: 10.5061/dryad.6756p3cv/1
title: data_Bleuetal_2012_JEB
DOI: 10.5061/dryad.73k6g/1
title: Limb_length_data

description: The file contains 4 tables containing pelvic and pectoral limb length measurements of fossil birds and extant birds measured in mm. The data were collected from museum specimens.
DOI: 10.5061/dryad.7bc88/5
title: Figure 4 - correlation (MS powerpoint file)

description: Figure 4. Correlation between functional flower tube length [mm], as the distance from the bottom of the calyx to the end of the calyx tube, or the petal claws, or the corona scales (which ever is extending functional tube length the most), and median amount of sucrose (%) in 78 Caryophylloideae in relation to pollination system (A), and phylogeny (B) (Spearman (all species) rS = 0.542, p &lt; 0.05; Spearman (nocturnal) rS = 0.39, p &lt; 0.05; Spearman (diurnal) rS  = 0.84, p &lt; 0.05); Spearman (self-pollinated) rS  = 0.31, ns).  Dianthus glacialis 1* (mainly selfing), data from Erhardt & Jäggi (1995); Dianthus gratianopolitanus 2* (intermediate between butterfly and moth pollination), data from Erhardt (1990).
DOI: 10.5061/dryad.7bc88/6
title: Appendix 1-6

description: Appendix 1: Origin of plants sampled for analysis of nectar sugar composition. Vouchers have been deposited in the herbaria of the Universities of Ulm and/or Bayreuth. Appendix 2 (Data from Jürgens et al., 2002). Pollination mode of Dianthus, Saponaria, Vaccaria, Agrostemma and Silene species based on information from the literature. Appendix 3 (Data from Witt, 2003). Average reproductive success of bagged hermaphrodite flowers of 66 Caryophylloideae species sorted by fruit set, seed set per fruit, and seed set of all bagged flowers. Appendix 4. Flower tube length, anthophore length, hair length and hair density on anthophores of 78 Caryophylloideae. Appendix 5 – SEM of the anthophore region of selected Caryophylloideae. Appendix 6. Species of which a few samples contained traces of possibly other sugars in addition to the main nectar sugars (sucrose, glucose, fructose). Reference list for Appendix.
DOI: 10.5061/dryad.7fj1k/94
title: Cecal_12_100uL_SDSTCAUrea_2d_24hr_OrbiVelos_Run5_032810_10

description: Tenth salt pulse for ceca 12, run 5
DOI: 10.5061/dryad.7fj1k/95
title: Cecal_12_100uL_SDSTCAUrea_2d_24hr_OrbiVelos_Run5_032810_11

description: Eleventh salt pulse for ceca 12, run 5
DOI: 10.5061/dryad.7fj1k/96
title: Cecal_12_100uL_SDSTCAUrea_2d_24hr_OrbiVelos_Run5_032810_12

description: Final salt pulse for ceca 12, run 5
DOI: 10.5061/dryad.8h154h65/19
title: VanGoghmelpomenePHASED

description: DNA sequence data for the gene VanGogh for multiple individuals for multiple races of Heliconius melpomene. The data is derived from direct sequencing, inferring polymorphisms from double peaks in the chromatograms. Haplotypes were determined by analytically phasing the data across all sequences using the program PHASE. Inferred sequence before phasing can be obtained in Genbank. The file includes a treeblock containing a neighbor-joining tree constructed from this data using PAUP* and used in the study.
DOI: 10.5061/dryad.8h154h65/20
title: optixeratoBayes

description: DNA sequence data for a 3'UTR plus a patial protein coding sequence of the gene optix for multiple individuals for multiple races of Heliconius erato. The data is derived from direct sequencing, inferring polymorphisms from double peaks in the chromatograms. Haplotypes were determined by analytically phasing the data across all sequences using the program PHASE. Inferred sequence before phasing can be obtained in Genbank. Identical haplotypes were consolidated into one haplotype sequence. The resulting Bayesian tree is attached as a treeblock.
DOI: 10.5061/dryad.8h154h65/21
title: optixmelpPHASEDHaplos

description: DNA sequence data for a 3'UTR plus a patial protein coding sequence of the gene optix for multiple individuals for multiple races of Heliconius melpomene. The data is derived from direct sequencing, inferring polymorphisms from double peaks in the chromatograms. Haplotypes were determined by analytically phasing the data across all sequences using the program PHASE. Inferred sequence before phasing can be obtained in Genbank. Identical haplotypes were consolidated into one haplotype sequence. The resulting Bayesian tree is attached as a treeblock.
DOI: 10.5061/dryad.8h154h65/22
title: optixeratoPHASEDNJ

description: DNA sequence data for a 3'UTR plus a patial protein coding sequence of the gene optix for multiple individuals for multiple races of Heliconius erato. The data is derived from direct sequencing, inferring polymorphisms from double peaks in the chromatograms. Haplotypes were determined by analytically phasing the data across all sequences using the program PHASE. Inferred sequence before phasing can be obtained in Genbank. A neighbor-joining tree inferred using PAUP* is attached as a treeblock.
DOI: 10.5061/dryad.8h154h65/23
title: optixmelpPHASEDNJ

description: DNA sequence data for a 3'UTR plus a patial protein coding sequence of the gene optix for multiple individuals for multiple races of Heliconius melpomene. The data is derived from direct sequencing, inferring polymorphisms from double peaks in the chromatograms. Haplotypes were determined by analytically phasing the data across all sequences using the program PHASE. Inferred sequence before phasing can be obtained in Genbank. A neighbor-joining tree inferred using PAUP* is attached as a treeblock.
DOI: 10.5061/dryad.bb2p8/1
title: fitness,density&diversity

description: This file contains 24-hour competitive fitness estimates, and diversity and density measure over time.
DOI: 10.5061/dryad.bc4sf.1
title: Data from: Kin-bias, breeding site selection, and female fitness in a cannibalistic Neotropical frog
DOI: 10.5061/dryad.bc4sf.2
title: Data from: Kin-bias, breeding site selection, and female fitness in a cannibalistic Neotropical frog
DOI: 10.5061/dryad.bg6fn/1
title: Fruit characteristics of megafauna-dependent species

description: Dataset with fruit traits of megafauna-dependet plant species in Brazil. Description of the variables is included in the file.
DOI: 10.5061/dryad.gg3c9/1
title: shrub encroachment, grazing and facilitation

description: This dataset aimed to quantify the interrelationships between grazing, the degree of shrub encroachment at the landscape scale and the effect of individual shrubs on the vegetation and soils beneath them regarding open areas. 

Data were obtained for 57 50 m x 50 m plots on two different areas (Buronga and Scotia) in semiarid New South Wales (Australia. Grazing was quantified by sampling within two contrasting land uses: 1) National Parks or protected areas, lightly grazed by native herbivores, with no livestock and exclusion of kangaroos and feral herbivores, and 2) Grazing properties, heavily grazed by livestock (mostly sheep and cattle) with no control of kangaroos or feral herbivores. Within these 4 combination of area x grazing (Buronga Grazed, Buronga Ungrazed, Scotia Grazed, Scotia Ungrazed) we sampled a gradient in shrub encroachment, with 14-15 plots ranging in shrub covers from 5 to over 50% (N= 57).

Within each plot, we sampled a variable number of quadrats (depending on shrub cover) beneath the dominant shrubs and in the open. In these quadrats we measured three soil function indices (LFA indicators; Tongway 1995, namely infiltration (ability to capture water and retain run-off and nutrients), stability (resistance to soil erosion) and nutrient cycling. We also measured vascular plant richness (species density), cover and biomass. With this data, and by using the RII index (Armas et al. 2004, cited in the text), we quantified patch-level effects (i.e., the effect of individual shrubs in the soils and plants beneath them). From this data we also obtained similarity indices between those subcommunities living beneath a nurse and those living in the open.

More details in the data can be obtained both in the metadata and data spreadsheets in the Excel file

There is not empty data.

Data was taken by David Eldridge, Santiago Soliveres and James Val.

Contact for further information: Dr. Santiago Soliveres (e-mail: santiagosoliverescodina@gmail.com)
DOI: 10.5061/dryad.h7km8/1
title: Queen shares and worker reproduction

description: Excel file contains data collected on colony productivity, reproductive shares of experimental queens, relatedness estimates and worker reproduction.
DOI: 10.5061/dryad.k8n14/2
title: cats-dogs

description: Alignment of 1545 bp COX 1 mitochondrial gene for 6 feliforms and 6 caniforms. Original data from NCBI.
DOI: 10.5061/dryad.k8n14/3
title: rodents

description: 62 rodents and mammals, 3768 bp. TREEBASE  M2481.
DOI: 10.5061/dryad.k8n14/4
title: M336

description: TREE BASE file M336
DOI: 10.5061/dryad.k8n14/5
title: M501

description: TREE BASE file M501
DOI: 10.5061/dryad.k8n14/6
title: M520

description: TREE BASE file M520
DOI: 10.5061/dryad.k8n14/7
title: M755

description: TREE BASE file M755.
DOI: 10.5061/dryad.k8n14/8
title: M767

description: TREE BASE file M767.
DOI: 10.5061/dryad.m1s66/1
title: Data Sexual conflict over mating in garter snakes Proc B
DOI: 10.5061/dryad.ms46q/1
title: Viola praemorsa  ecology: Responses to experimental warming, pollination ecology and relative performance of seeds

description: This data is from experiments on Viola praemorsa ssp. praemorsa in 2008/09. All abbreviations are contained in the "Read Me" sheet of the excel file.
DOI: 10.5061/dryad.ms574/1
title: Table_S1

description: List of habitat variables and source data used in a 2011 study to make comparisons across bog turtle (Glyptemys muhlenbergii) extant and randomly selected apparently bog turtle-unoccupied wetlands in southeastern New York State.
DOI: 10.5061/dryad.ms574/2
title: Table_S2

description: List of 2001 National Land Cover Dataset (NLCD) land cover categories consolidated to create cover classes for a 2011 study of landscape-level drivers of bog turtle (Glyptemys muhlenbergii) distribution in southeastern New York State.
DOI: 10.5061/dryad.ms574/3
title: Table_S3

description: Raw data used in a 2011 study to investigate landscape influences on bog turtle (Glyptemys muhlenbergii) distribution in southeastern New York State. Detailed definitions, units, and sources for variables are indicated on the far right portion of the table.
DOI: 10.5061/dryad.ms574/5
title: Data_S2

description: The USFWS National Wetlands Inventory for southeastern New York State and adjacent portions of Massachusetts and Connecticut.
DOI: 10.5061/dryad.ms574/6
title: Data_S3

description: The USGS National Elevation Dataset flow direction grid for southeastern New York State.
DOI: 10.5061/dryad.mt5b2/1
title: Crepidula convexa genotype data for population and parental analyses

description: This file contains individual information of Crepidula convexa samples . For each sample, it is incated the type (adult or embryo) , the ID, the ID of the mother (for embryo samples), the sex (Fb being brooding females) and size for adult individuals and the genotype at 6 microsatellite loci
DOI: 10.5061/dryad.nf2c425n/1
title: README
DOI: 10.5061/dryad.nf2c425n/2
title: variableSh2data
DOI: 10.5061/dryad.qj8713jm/1
title: Buzatto et al 2012 inbred lines data

description: This file contains basic information about the inbred lines used in the partial diallel breeding design used in the article. It contains the average body weight (measured at the quiescent tritonymph stage, in mg), and the average morph ratio of each of the eight inbred lines.
DOI: 10.5061/dryad.qj8713jm/2
title: Buzatto et al 2012 Partial Diallel data

description: This file contains the results of the partial diallel analysis reported in the article. Crosses are between eight inbred lines of the bulb mite Rhizoglyphus echinopus (see design in the article). Each line in the file represents an individual offspring. Variables are the number of the inbred line of the dam and sire of each cross; a letter indicating from which replicate of that specific cross that offspring came from; the offspring morph (response variable in the analysis); the morph of the sire.
DOI: 10.5061/dryad.qr3t2/1
title: Archive

description: The archive contains 6 files corresponding to genotypic and phenotypic data for the QTL mapping. Each file corresponds to the data of one pedigree (NR_P10, R_P10, NR_C04 and R_C04, see material and methods of the manuscript), and one phenotypic trait associated (Pher and mi for NR_P10 and R_P10, mi for R_C04 and NR_C04). The columns correspond to F2 (backcross) progenies. Lines correspond to AFLP markers (e.g. CbPbeACbAgg207.97) and Tpi marker, followed by one phenotypic trait (Pher or mi). The AFLP phenotypes are coded “a” for the absence of a band, and “h” for the presence of a band. Each AFLP marker has been coded twice, in the observed configuration (e.g. CbPbeACbAgg207.97) and in the reverse one (e.g. CbPbeACbAgg207.97R) because of the unknown linkage phase. The “mi” phenotypes are coded “1” for “mated” and “0” for “non-mated”.  The female “pher” phenotypes are coded “0” for “pure E” and “1” for “E/Z” pheromone (no data for males). “-” is for missing data.
DOI: 10.5061/dryad.qv331/1
title: Packings of tetrahedra particles at different packing fractions and preparation history

description: Raw data of tetrahedra packings is obtained by X-Ray-microtomography at 100mu/voxel. A specifically developed particle detection algorithm finds centers and orientations of the tetrahedra (assuming ideal tetrahedra). For more details on the particle detection, refer to the supplement of the publication.
DOI: 10.5061/dryad.t6j52/1
title: Genetic Population and Morphology_Floreana Tree Finches 2005 and 2010_Am Nat

description: Morphological measurements of tree finches sampled on Floreana Island, Galapagos, 2005 and 2010. Techniques for measuring morphological features are described in the associated manuscript. Genetic population refers to population assignment based on analyses of microsatellite loci (using the program STRUCTURE).
DOI: 10.5061/dryad.t6j52/3
title: Assortative Pairing and Genetic Population_Am Nat

description: Assortative pairing, genetic and morphological data for male and female tree finches sampled on Floreana Island, Galapagos, 2005 and 2010. Techniques for measuring morphological features are described in the associated manuscript. Genetic population refers to population assignment based on analyses of microsatellite loci (using the program STRUCTURE).
DOI: 10.5061/dryad.t6j52/4
title: Philornis Intensity and Genetic Population Floreana Tree Finches_Am Nat

description: Total Philornis downsi larvae intensity per nest for tree finches breeding on Floreana Island in 2005, 2010 and 2012. Genetic population refers to population assignment based on analyses of microsatellite loci (using the program STRUCTURE). Male colour and putative species assignment are also provided (STF=small tree finch, MTF=medium tree finch, LTF= large tree finch).
DOI: 10.5061/dryad.vh21c/1
title: neritids_sample_localities

description: Population serial numbers are given in samples names as ###.XX where ### is the serial number and XX is the number of the individual sample. Samples without serial numbers were kindly provided by Melissa Frey. Lat/Longs are probably not very accurate. - Eric Crandall July 6, 2012
DOI: 10.5061/dryad.vh21c/3
title: canalis-final-migrate

description: Input file for Neritina canalis in Migrate format. Mitochondrial CO1 sequence collected with Folmer primers: HCO-2198, LCO-1490. See localities file for more information.
DOI: 10.5061/dryad.vh21c/4
title: dilatatum-final-migrate

description: Input file for Neripteron dilatatum in Migrate format. Mitochondrial CO1 sequence collected with Folmer primers: HCO-2198, LCO-1490. See localities file for more information.
DOI: 10.5061/dryad.1661m/1
title: ants_searching_for_a_better_home_comments_raw_data

description: Number of ants counted according to the protocol described in the manuscript.
DOI: 10.5061/dryad.2ht96/1
title: N500_adults_20percent

description: Simulated data - N500 low diversity population with 20% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
DOI: 10.5061/dryad.2ht96/2
title: N500_adults_40percent

description: Simulated data - N500 low diversity population with 40% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
DOI: 10.5061/dryad.2ht96/3
title: N500_adults_60percent

description: Simulated data - N500 low diversity population with 60% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
DOI: 10.5061/dryad.2ht96/4
title: N500_adults_80percent
DOI: 10.5061/dryad.2ht96/5
title: N500_adults_100percent

description: Simulated data - N500 low diversity population with 100% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
DOI: 10.5061/dryad.2ht96/6
title: N1000_adults_20percent

description: Simulated data - N1000 high diversity population with 20% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
DOI: 10.5061/dryad.2ht96/7
title: N1000_adults_40percent

description: Simulated data - N1000 high diversity population with 40% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
DOI: 10.5061/dryad.2ht96/8
title: N1000_adults_60percent

description: Simulated data - N1000 high diversity population with 60% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
DOI: 10.5061/dryad.332b5/1
title: Directional scattering measurements of a Chrysococcyx cupreus tertial feather (OS X)
DOI: 10.5061/dryad.332b5/2
title: Directional scattering measurements of a Chrysococcyx cupreus tertial feather (Windows)
DOI: 10.5061/dryad.42ph0/1
title: Hopkins_tables-description

description: Metadata for supplementary tables
DOI: 10.5061/dryad.456q26k3/1
title: Pine_DryadSubmission

description: Microsatellite genotypes for jack pine and lodgepole pine collected in BC, AB, SK, ON and MN.
DOI: 10.5061/dryad.50r80407/1
title: RAG1 Alignment

description: Alignment of DNA sequences of a fragment of the Regulation-activating gene I (RAG1).
DOI: 10.5061/dryad.50r80407/2
title: BDNF Alignment

description: Alignment of a fragment of the Brain-drerived neurotrophic factor gene (BDNF)
DOI: 10.5061/dryad.5459n/1
title: Comparative data on pre-pollination costs of seed production

description: This data file summarizes data extracted from the published literature on the fraction of the total costs of seed production that is incurred pre-pollination.  The table includes four columns:  (1) plant species (and flower gender for plants that have both female and bisexual flowers); (2) plant group (gymnosperm vs. wind-pollinated angiosperm vs. animal-pollinated angiosperm; (3) the observed proportion of total investment in seed production associated with pre-pollination costs; and (4) the literature citation. The full references are given below the table.
DOI: 10.5061/dryad.5fp4g/2
title: data experiment 2

description: Diet choice of captive red knots (Calidris canutus canutus) were determined after being fed a diet of either Loripes lucinalis or Dosinia isocardia, by offering both species simultaneously in seperate piles on a tray. Trials ended after 20 prey choices, or after one hour (1 case, 13 ingestions). Species of each prey ingestion was recorded. Further details can be found in Oudman et al. (2014, American Naturalist)
DOI: 10.5061/dryad.6sb403hc/1
title: summary data ARS

description: Data describing variation in male annual reproductive success
DOI: 10.5061/dryad.8r652/2
title: Microsatellite_data

description: Microsatellite data from Epidendrum firmum. The file is in GenAlEx format. Row one lists the number of loci, the number of samples, the number of populations, and the number of samples per population. Row two lists population names in the column below each corresponding population size in row one. Row three contains column headers: Sample Identifier, Population, and each of the five microsatellite loci. Allele one and allele two for each locus are listed in separate columns. The data correspond to allele size in base pairs, including the primer sequence. Missing data are coded as zeros.
DOI: 10.5061/dryad.95ct6q2c/1
title: Online Appendix G. extinct megammamals database

description: Body mass estimations for species belonging to 61 genera of extinct mammals of the New World. Only Pleistocene megafaunal species and genera are considered (≥44 kg) since they are known to have selectively been driven extinct. Body size values were obtained from Smith et al. (2003), and for unspecific generic fossil records an average of the body sizes of the species within was used. Latitudinal geographic distribution of extinct species is indicataed based on the palaeontological site where collections were registered. Data assembled in this database were downloaded from the Paleobiology Database (http://paleodb.org/ - url accessed 17 December 2011, using the following parameters: taxon name = Mammalia; time intervals = Early to Late Pleistocene; continents = North America and South America; include occurrences of extant or extinct taxa? = extinct only).
DOI: 10.5061/dryad.95ct6q2c/2
title: Online Appendix A. New World mammal species

description: Table A1. New World mammal species checklist indicating each species body mass. The character as GABI allochthon arriving to North America or South America (GABI North and GABI South, respectively) and as Eurasian allochthon (Eurasian) is also indicated.
DOI: 10.5061/dryad.b854d/1
title: Supplemental figure 1

description: SUPPLEMENTAL DATA 1—Columnar section of the Treptichnus pedum Zone of the Chapel Island Formation in Fortune Head, Newfoundland.
DOI: 10.5061/dryad.b854d/2
title: Supplemental figure 2

description: SUPPLEMENTAL DATA 2—Columnar section of the Rusophycus avalonensis Zone of the Chapel Island Formation in Fortune Head, Newfoundland.
DOI: 10.5061/dryad.b854d/3
title: Supplemental figure 3

description: SUPPLEMENTAL DATA 3—Columnar section of the uppermost Dengying and Zhujiaqing formations in Meishucun, Yunnan.