cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14549325
title: Sampled Structures from Diffusion Models for Protein SHAPES

description: Data associated with SHAPES (Structural and Hierarchical Assessment of Proteins with Embedding Similarity)



rmsd.tar.gz : RMSD and TM scores of ESMFold predicted structures with original designed backbones.

mpnn.tar.gz : ProteinMPNN designed sequences.

raster.tar.gz : CATH and sampled structures annotated with the grid square label after rasterization. Also includes the specific structures which are displayed in the raster plots.

dssp.tar.gz : Secondary structure frequences computed by DSSP.

samples.tar.gz : All sampled structures.


Due to size, the ESMFold predicted structures for eight ProteinMPNN-designed sequences per sampled backbone are not included.
DOI: 10.5281/zenodo.14583581
title: Sampled Structures from Diffusion Models for Protein SHAPES

description: Data associated with SHAPES (Structural and Hierarchical Assessment of Proteins with Embedding Similarity)



rmsd.tar.gz : RMSD and TM scores of ESMFold predicted structures with original designed backbones.

mpnn.tar.gz : ProteinMPNN designed sequences.

raster.tar.gz : CATH and sampled structures annotated with the grid square label after rasterization. Also includes the specific structures which are displayed in the raster plots.

dssp.tar.gz : Secondary structure frequences computed by DSSP.

samples.tar.gz : All sampled structures.


Due to size, the ESMFold predicted structures for eight ProteinMPNN-designed sequences per sampled backbone are not included.

 

Code: proteinshapes-main.zip
DOI: 10.15468/dl.9nvrvg
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ameroglossum pernambucense Eb.Fisch., S.Vogel & A.V.Lopes"
 ]
}

 The dataset includes 96 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071680-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwyuuc
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sparedrus lencinae Vázquez, 1988",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 24 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071681-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e192280
title: Data and Code for: Clean Identification? The Effects of the Clean Air Act on Air Pollution, Exposure Disparities and House Prices

description: We assess the US Clean Air Act standards for fine particulate matter (PM2.5). Using high-resolution data, we find that the 2005 regulation reduced PM2.5 levels by 0.4μg/m^3 over five years, with larger effects in more polluted areas. Standard difference-in-differences overstates these effects by a factor of three because time trends differ by baseline pollution, a bias we overcome with three alternative approaches. We show that the regulation contributed to narrowing Urban-Rural and Black-White PM2.5 exposure disparities, but less than difference-in-differences suggest. Pollution damages capitalized into house prices, on the other hand, appear larger than previously thought when leveraging regulatory variation.
DOI: 10.3886/e192280v1
title: Data and Code for: Clean Identification? The Effects of the Clean Air Act on Air Pollution, Exposure Disparities and House Prices

description: We assess the US Clean Air Act standards for fine particulate matter (PM2.5). Using high-resolution data, we find that the 2005 regulation reduced PM2.5 levels by 0.4μg/m^3 over five years, with larger effects in more polluted areas. Standard difference-in-differences overstates these effects by a factor of three because time trends differ by baseline pollution, a bias we overcome with three alternative approaches. We show that the regulation contributed to narrowing Urban-Rural and Black-White PM2.5 exposure disparities, but less than difference-in-differences suggest. Pollution damages capitalized into house prices, on the other hand, appear larger than previously thought when leveraging regulatory variation.
DOI: 10.15468/dl.tyhwsa
title: Occurrence Download

description: A dataset containing 126389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mytilus edulis Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 126389 records from 412 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071663-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hm4mrc
title: Occurrence Download

description: A dataset containing 82494512 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 82494512 records from 9659 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031309-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnudm7
title: Occurrence Download

description: A dataset containing 1469 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pterois miles (Bennett, 1828)"
 ]
}

 The dataset includes 1469 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277195-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktqjz4
title: Occurrence Download

description: A dataset containing 1883 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia antisyphilitica Zucc."
 ]
}

 The dataset includes 1883 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132660-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwuzfj
title: Occurrence Download

description: A dataset containing 7038 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Himantopus himantopus (Linnaeus, 1758)",
 "Year 1972-2022"
 ]
}

 The dataset includes 7038 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0280129-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mxzbn
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Beelzebufo ampinga Evans et al., 2008"
 ]
}

 The dataset includes 27 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132659-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqpqrw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prosymna semifasciata Broadley, 1995"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277184-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2s473e
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratostylis elmeri Ames"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132668-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgrkq6
title: Occurrence Download

description: A dataset listing the 9089 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is DEU",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "PublishingOrg is c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f"
 ]
 },
 "TaxonKey is Animalia"
 ]
}

 The dataset's 9089 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0278856-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89gdxv
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratostylis culminicola P.Royen"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132661-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gb4r9f
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hebius metusia (Inger, Zhao, Shaffer & Wu, 1990)"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281730-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nb6sp
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geophis laticinctus Smith & Williams, 1963"
 ]
}

 The dataset includes 20 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132671-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6s5wjg
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus kolengh Abdala & Lobo, 2006"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281747-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rshf7
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.47528 26.03084,-98.43472 25.95336,-98.3105 25.90663,-98.23825 25.91803,-98.16271 25.98782,-98.16024 26.0115,-98.18082 26.01593,-98.20387 25.98634,-98.2475 25.96044,-98.28372 25.95081,-98.38168 25.97302,-98.40062 25.99152,-98.44672 26.04108,-98.47528 26.03084))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 2000-2023"
 ]
}

 The dataset includes 94 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132680-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wvnur
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amblyodipsas concolor (Smith, 1849)"
 ]
}

 The dataset includes 72 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281719-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxqpc9
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratostylis gracilis Blume"
 ]
}

 The dataset includes 28 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132684-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ssm7q9
title: Occurrence Download

description: A dataset containing 12241 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Brazil",
 "Country is Argentina",
 "Country is Paraguay"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Phacellodomus rufifrons (Wied-Neuwied, 1821)"
 ]
}

 The dataset includes 12241 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0355433-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7vg2ng
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xylocopa abbotti (Cockerell, 1909)"
 ]
}

 The dataset includes 50 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132688-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prz3jc
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrobium cyclobulbon Schltr."
 ]
}

 The dataset includes 28 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022413-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dy5q27
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratostylis keysseri Schltr."
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132732-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqhejn
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtodactylus teyniei David, Nguyen, Schneider & Ziegler, 2011"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281749-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uarbdt
title: Occurrence Download

description: A dataset containing 11313 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Cuminia fernandezia Colla, Cuminia eriantha (Benth.) Benth., Coprosma oliveri Fosberg, Copiapoa krainziana F.Ritter, Colletia spartioides Bertero ex Colla, Chusquea fernandeziana Phil., Chorizanthe novoana Teillier & J.Macaya, Chloraea disoides Lindl., Chloraea cuneata Lindl., Chenopodium sancti-ambrosii Skottsb., Chenopodium nesodendron Skottsb., Cardamine kruesselii Johow ex Reiche, Boehmeria excelsa (Bertero ex Steud.) Wedd., Berberis masafuerana Skottsb., Berberis corymbosa Hook. & Arn., Azara serrata var. fernandeziana (Gay) Reiche, Atriplex chapinii I.M.Johnst., Astragalus trifoliatus Phil., Asplenium polyodon G.Forst., Asplenium peruvianum Desv., Asplenium gilliesii Hook., Alstroemeria piperata A.R.Flores & J.M.Watson, Alstroemeria mollensis Muñoz-Schick & Brinck, Alstroemeria achirae Muñoz-Schick & Brinck, Adesmia bijuga Phil., Acaena masafuerana Bitter)"
 ]
}

 The dataset includes 11313 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132694-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmqunx
title: Occurrence Download

description: A dataset containing 19465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Living Specimen)",
 "Geometry POLYGON((-101.49107 -6.69239,-55.50893 -6.69239,-55.50893 11.69239,-101.49107 11.69239,-101.49107 -6.69239))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ramphastos brevis Meyer de Schauensee, 1945",
 "Year 1980-2023"
 ]
}

 The dataset includes 19465 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132793-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7gg5q
title: Occurrence Download

description: A dataset containing 6551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nephromopsis chlorophylla (Willd.) Divakar, A.Crespo & Lumbsch)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 6551 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282016-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rn9gzd
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Afroedura marleyi (Fitzsimons, 1930)"
 ]
}

 The dataset includes 73 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277180-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9uuf9f
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Petiveria alliacea var. tetrandra (B.A.Gomes) Hauman"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132773-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d67pcy
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guinea",
 "TaxonKey is Bonamia thunbergiana (Roem. & Schult.) F.N.Williams"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132745-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9btpc
title: Occurrence Download

description: A dataset containing 35662 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursus arctos Linnaeus, 1758"
 ]
}

 The dataset includes 35662 records from 278 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212304-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtg9nt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phrynocephalus incertus Bedriaga, 1905"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277170-210914110416597/datasets/export for details.
DOI: 10.15468/dl.xcmudb
title: Occurrence Download

description: A dataset containing 34813 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lynx rufus (Schreber, 1777)"
 ]
}

 The dataset includes 34813 records from 177 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132796-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8tgwk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratostylis pinguis Schltr."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132813-230224095556074/datasets/export for details.
DOI: 10.15468/dl.kyzwrs
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anadia steyeri Nieden, 1914"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277174-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7g92fc
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelophylax cretensis (Beerli, Hotz, Tunner, Heppich & Uzzell, 1994)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 281 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015714-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6b64x
title: Occurrence Download

description: A dataset containing 127152 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Arachnida and Myriapoda (Luomus)"
 ]
}

 The dataset includes 127152 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132901-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.