cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2y6n6pj94c
title: Genomic profiling of PML bodies by ALaP-seq reveals transcriptional regulation by PML bodies through the DNMT3A exclusion

description: The promyelocytic leukemia (PML) body is a phase-separated nuclear structure physically associated with chromatin, implying its crucial roles in genome functions. However, its role in transcriptional regulation is largely unknown. We developed APEX-mediated chromatin labeling and purification (ALaP) to identify the genomic regions proximal to PML bodies. We found that PML bodies associate with active regulatory regions across the genome and with an ~300 kb of the short arm of the Y chromosome (YS300) in mouse embryonic stem cells. The PML body-association with YS300 is essential for the transcriptional activity of the neighboring Y-linked clustered genes. Mechanistically, PML bodies provide specific nuclear spaces that the de novo DNA methyltransferase DNMT3A cannot access, resulting in the steady maintenance of a hypomethylated state at Y-linked gene promoters. Our study underscores a new mechanism for gene regulation in the 3D-nuclear space and provides insights into the functional properties of nuclear structures for genome function.
DOI: 10.5281/zenodo.8396762
title: RRab Templates - Decam

description: Missing templates in folder 1: RRab Templates - Decam
DOI: 10.17632/8yk565d5zc
title: Dataset 5Z: Certification files, uncertified solutions (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All alphaCertified output for uncertified solutions, organized by Paramotopy run.
DOI: 10.17632/wwk94pzbtc
title: Dataset 4L.4: Solutions files, sigma = 4, part 4 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All proper solutions files for Paramotopy runs with \sigma = 4.0 on ILR-sampled parameter points in [0.1, 10]^8.
DOI: 10.17632/9tw52dy9wd
title: Data for: Thermoregulatory differences in African mole-rat species from disparate habitats: plasticity and limitations

description: "Tb data" contains information on core body temperature for three species of mole-rat (Damaraland, Natal, highveld) at different ambient temperatures "Ts data" contains information on surface body temperatures of different body parts for three species of mole-rat (Damaraland, Natal, highveld) at different ambient temperatures
DOI: 10.17632/gb89xjpbwk
title: Data for: Workforce Capacity in Municipal Government

description: Data set for "Workforce Capacity in Municipal Government," article forthcoming in Public Administration Review.
DOI: 10.17632/jwv5pvnbg2
title: Data for: The polyphenol Ellagic Acid exerts anti-inflammatory actions via disruption of store-operated calcium entry (SOCE) pathway activators and coupling mediators

description: Data from Western Blot. Protocols for immunoblotting.
DOI: 10.17632/zz8prhkrwn
title: Dataset 4H.2: Solutions files, sigma = 1.5, part 2 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All final posreal counts files for Paramotopy runs with \sigma = 1.5.
DOI: 10.17632/6ndjcdg89n
title: Online study about Spanish People's Attitudes Toward the COVID-19 Crisis in Spain

description: Online data collection about 9 attitudes toward the virus pandemic.
DOI: 10.17632/j6436wxxb9
title: Data for: Effects of coating ingredients on the thermal and mechanical properties of hydrocarbon intumescent coating chars

description: Data for this manuscript.
DOI: 10.17632/ng8h9fcmts
title: Dataset 4M.1: Solutions files, sigma = 5, part 1 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All (non-final) posreal counts files for Paramotopy runs with \sigma = 5.0.
DOI: 10.17632/pspgvrg6vx
title: Paper Title - Nomogram based on B-mode ultrasound and shear-wave elastography radiomics can improve suspected breast lesions classiﬁcation

description: The clinical, radiomics, adn so on.
DOI: 10.17632/s75x36k6p8
title: The superstar effect on color discrimination in the Brazilian cultural labor market

description: The superstar effect on color discrimination in the Brazilian cultural labor market
DOI: 10.17632/26g6m7h7t8
title: RNA-sequence data of hfRPE cells and hAECs-RPE cells

description: RNA-sequence data of human fetal retinal pigment epithelium (hfRPE) and human amniotic epithelial cells-derived RPE（hAECs-RPE）
DOI: 10.17632/nbmfpmycvy
title: Data for: Matrix-Analytic Solutions in Multistation Production Lines

description: This package contains Matlab code and data for manuscript
DOI: 10.17632/86m5jc4787
title: Dataset 4Q.8: Solutions files, sigma = 20, part 8 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All proper solutions files for Paramotopy runs with \sigma = 20 on linking parameter points.
DOI: 10.17632/rpjsztsvhj
title: Data for: A Framework for Real-Time Assembling of Decontamination Plan for a Contamination Event
DOI: 10.17632/cst989sk9k
title: An accurate eighth order exponentially-fitted method for the efficient solution of the Schrödinger equation

description: Abstract An accurate eighth algebraic order exponentially-fitted method is developed for the numerical solution of radial Schrödinger equation and of the coupled differential equations of the Schrödinger type. The free parameters of the new scheme are defined in order to integrate exactly exponential functions. Numerical and theoretical results indicate that the new method is much more efficient than other classical and exponentially fitted methods. Title of program: MAPLESIM Catalogue Id: ADLI_v1_0 Nature of problem With the present program the derivation of the coefficients produced by the equation (14) is obtained. The first part of the proposed program consists of the calculation of the matrix elements which form the coefficients of the system of equations. The second part of the proposed program, as this has been explained in [1], [2] and [3], consists of the iterative application of the L'Hospital's rule (to avoid coefficients of the form 0/0) for the computation of the solution of these equations that ... Versions of this program held in the CPC repository in Mendeley Data ADLI_v1_0; MAPLESIM; 10.1016/S0010-4655(99)00459-2 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/dsyxm93ws6
title: Data for: Does SNORD116 mediate aspects of psychosis in Prader-Willi syndrome?

description: Anonymized dataset of 540 typically developing individuals genotyped for 5 SNPs within the SNORD116 gene and phenotyped for schizotypal and autism spectrum personality traits. (AQ and SPQ-brief).
DOI: 10.17632/f2554kzpyw
title: An oscillation suppressing semi-Lagrangian solver for advection equation

description: Abstract This work presents a Fortran code to solve the advection equation in 1, 2 and 3 dimensions. The scheme is based on a rational interpolation function. Not only the interpolation profile itself but also its first-order spatial derivatives are predicted by the governing equation. Using the Lagrangian invariant solution of the advection to evaluate the gradients makes the method compact. The scheme is indeed constructed over only one mesh cell. The method has third-order accuracy in the smooth re... Title of program: RCIP Catalogue Id: ADIU_v1_0 Nature of problem As a kind of first order hyperbolic partial differential equations, advection equation describes a wide spectrum of phenomena from physical problems such as material transport, heat transfer and wave propagation. The code has been developed to solve the advection equation in 1, 2 and 3 dimensions with a Eulerian computational grid. Versions of this program held in the CPC repository in Mendeley Data ADIU_v1_0; RCIP; 10.1016/S0010-4655(98)00094-0 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/s5h5x63s8y
title: Dataset 5A.11: Certification files, sigma = 1, part 11 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All composite output files from certifying solutions from Paramotopy runs with \sigma = 1.0 on VEGAS-sampled parameter points at \sigma = 15.
DOI: 10.17632/dgdb2gp835
title: Data for: New spectroscopic method for true color determination in natural water with high agreement with visual methods”

description: The program is dedicated to true water color (TWC) calculation by light absorption in visual range from 390 up to 830 nm. Calculation is based on mathematical model of color perception by standard observer using spectral data, contained in text files. It allows: 1 – To load standard solutions and samples spectra with spectrum conversion into absorption when required; 2 – To save and upload calculation of graduation curve and graduation data; 3 – To calculate true water color and export data to Microsoft (MS) Excel table; Surce code and data examples are also attached.
DOI: 10.17632/mrv979tx2x
title: Datasets

description: Table 2: Dissolved chemical and δ13CDIC data for the Teesta River and its tributaries from the Brahmaputra river system Table 3: Expected elemental and isotopic ratios for various weathering types.
DOI: 10.17632/dtz8zp48tj
title: Cholestasis REDCap survey results from pediatric primary care providers

description: Data was compiled and analyzed through the REDCap software program. Results were based on a 20 question survey sent to pediatric primary care providers to asses for variations in diagnosis and management of cholestatic jaundice which can lead to a delay in the diagnosis of biliary atresia, a common cause of cholestasis in infants. The survey included multiple-choice and Likert scale questions. Information on knowledge and interpretation of appropriate screening tests, past experience/behavior, confidence/comfort level managing cholestasis, as well as demographic information was collected. Providers were also asked their level of knowledge regarding the recently published guidelines on cholestatic jaundice by the North American Society for Pediatric Gastroenterology, Hepatology, and Nutrition (NASPGHAN) and the European Society for Pediatric Gastroenterology, Hepatology, and Nutrition (ESPGHAN). Survey results demonstrate an overall lack of knowledge regarding the guidelines on cholestatic jaundice in the pediatric primary care community. More standardized protocols and screening tools for cholestatic jaundice may lead to earlier diagnosis of biliary atresia leading to decreased morbidity, increased survival, and a decrease in overall healthcare cost.
DOI: 10.17632/2jzkxbwgp8
title: Dataset on tip vortex formation noise produced by wall-mounted finite airfoils with sinusoidal and porous airfoil tip geometries

description: This dataset consists of measurements of tip vortex formation noise produced by finite length airfoils with sinusoidal and porous tips. These data were obtained using the specialist aeroacoustic test facilities at the Brandenburg University of Technology (BTU) in Cottbus, Germany and a 47-channel planar microphone array. Over 2600 unique test cases with variations in airfoil profile shape, tip geometry, angle of attack and Reynolds number were measured during the experimental campaign. The dataset contains one-third-octave band tip noise spectra that have been processed using Acoular, a Python module for acoustic beamforming.
DOI: 10.17632/2p862s8sd4
title: Data for: Observation of drastic changes in the magnetic response of epitaxial TbMnO3 thin films upon Al-doping

description: Depth profiling date for Al-doped TbMnO3 thin films.
DOI: 10.17632/p6b4j52xh2
title: Data for: Feeding habits of the Pacific Bluefin tuna (Thunnus orientalis) larvae in two nursery grounds based on morphological and metagenetic analyses
DOI: 10.17632/pw5tv74csz
title: Data for: Controls on volatile fatty acid concentrations in marine sediments (Baltic Sea)

description: Supplementary data files for "Controls on volatile fatty acid concentrations in marine sediments (Baltic Sea)" - Geochimica et Cosmochimica Acta
DOI: 10.17632/zvmsvgp22y
title: Questions for the interviews and focus groups described in the article "Governance strategies for a successful marine protected area – the case of Torre Guaceto"

description: Questions prepared in advance of 15 in-depth, semi-structured interviews with stakeholders and a focus group with the fishermen of the Torre Guaceto Marine Protected Area (south-eastern Italy). The objective of the research was to analyse the governance strategies that enabled the generation of ecological and economic benefits. In particular, the objective was to explore the use of economic and non-economic incentives in Torre Guaceto, and how these interacted to create positive change. The interviews broadly followed a set of questions prepared in advance for each category of stakeholders. The questions aimed to explore the history of the MPA; the governance arrangements (e.g., the development and contents of the fishing protocol, the enforcement mechanisms in place, the kinds of incentives used, the financing model); the positive and negative impacts of the designation on the different sectors; the perception of the relevant stakeholders; the change in their opinions over time and the reason for any change; the conflicts and synergies among different categories of stakeholders and how conflicts have been managed and synergies generated. The interviews and the discussion during the focus group were recorded and transcribed.
DOI: 10.17632/7kzpn3bsb3
title: DEIXE SEU LIKE! O Engajamento nas Publicações com Digital Influencers no Instagram das DMOs Brasileiras

description: In a scenario of expanding competition between tourist destinations, DMOs face the challenge of positioning them attractively. To this end, these organizations can make use of various communication marketing strategies, including social media, platforms whose effectiveness is measured through engagement. From these channels originate the digital influencers, which in recent years have gained greater academic and marketing prominence. Given this theoretical foundation, this research aimed to measure the degree of engagement in publications with digital influencers on Instagram of Brazilian DMOs, with time frame between December / 17 and December / 18. To achieve the necessary results for the proposed problem, the data mining technique was used in a sample of 11 Instagram profiles from Brazilian state DMOs, selected after a filtering process. The collected data were treated from a quantitative descriptive approach, having as parameter three main indicators, as follows: (1) total publications, (2) likes and (3) comments. All these indices were defined after consulting the engagement literature. In addition, a T Test was done between paired samples to verify if there was a significative difference on the means. In general, the results indicated that posts with digital influencers have better results, given the proposed time frame, especially when compared with the indexes of general posts. However, inferential statistics indicated that the differences between means were not relevant. In such a way, the strategy of endorsement by influencers does not seem to produce relevant effects on user interaction in the profiles of Brazilian DMOs.The innovative character of this research stems from the use of the data mining technique to deliver accurate results as to the effectiveness of a rising social media strategy, providing managers with a solid framework for analysis and fostering the field of discussion.
DOI: 10.17632/snm7cx7vvf
title: Multiscale model of the role of grain boundary structures in the dynamic intergranular failure of polycrystal aggregates

description: This is the supplementary material required to reproduce the findings of the refereed paper. Instructions for the data acquisition of the meshed polycrystalline structure used in this work are provided. The LAMMPS scripts for the minimization energy and failure tests are described in detail. In order to use these scripts, all the grain boundaries are listed with adequate information to be reproduced using the GBstudio. The data of the grain boundary energy and failure criterion is presented in some interactive Matlab figures. Finally, the simulations of atomistic and mesoscale failure shown in this article.
DOI: 10.17632/3fmbr5hch4
title: Seven-day annualized yield of the 19 IMMFs

description: Recent years have witnessed the proliferation of the Internet money market funds (IMMFs) in China. IMMFs can be divided into 3 categories: (a) IMMFs docked by online third party payment Institutions; (b) IMMFs docked by banks; (c) IMMFs docked by the fund companies. 19 IMMFs as full research samples. Seven-day annualized yield of the 19 IMMFs were extracted from Wind Database. The sample period of this paper covers July 22nd, 2015 until December 5th, 2018. After eliminating invalid data, each yield series contains 825 daily data, with a total of 15,675 daily observations. Analysis performed was based on value at risk (VaR) and liquidity adjusted value at risk, to optimize IMMFs’ risk measurement
DOI: 10.17632/4z57wzbvs4
title: Data for: An accelerated gradient algorithm for well control optimization

description: This is a Matlab code file for the calculation of the gradient using the simultaneous perturbation stochastic approximation technique.
DOI: 10.17632/n2fddykhsb
title: Data for: Structural characterization and antioxidant activities of a water soluble polysaccharide isolated from Glycyrrhiza glabra

description: In previous research, some G. glabra polysaccharides were isolated and examined its physicochemical property and preliminary structural features. However, the detailed structure of G. glabra polysaccharides and its conformational structural properties have not been studied systematically. Therefore, the purpose of the present study was to systematically investigate the fine structure and conformational properties and antioxidant activities of G. glabra polysaccharide by Ligand-Exchange HPLC column, methylation and GC-MS analysis, one and two-dimensional NMR spectra and Congo red staining. Moreover, scanning electron microscope and X-Ray Diffraction analysis were used to confirm the shape of polysaccharide. Thermal properties of polysaccharide were also studied. Antioxidant activities of G. glabra crude polysaccharides were studied on the model of DPPH radical scavenging, ABTS radical scavenging, and hydroxyl radical scavenging rates.
DOI: 10.17632/y84x8cdyy3
title: Dataset 4O.7: Solutions files, sigma = 10, part 7 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All proper solutions files for Paramotopy runs with \sigma = 10 on VEGAS-sampled parameter points at \sigma = 10.
DOI: 10.17632/6ty2c53bcs
title: Data for: Mechanical properties and analytic solutions of pre-stressed lining with un-bonded annular anchors under internal water loading

description: A new type of prestressing structure, the MUAA lining, is proposed in this research. In order to clarify the mutual action mechanism among the annular anchor, the concrete lining and the surround rock, a large-scale in-situ loading test and corresponding theoretical analysis are carried out.
DOI: 10.17632/7m928vkpht
title: Microglial homeostasis requires balanced CSF-1/CSF-2 receptor signaling

description: Source FCS files for Figure 4F
DOI: 10.17632/dgdhh2t2py
title: Ab initio molecular dynamics (AIMD) simulations of the interlayer contents of LDH-Gluconate

description: Initially, three different arrangements of the gluconate anion in the LDH interlayer were selected (Figure 1), namely, i) tilted in relation to the cationic layer and antiparallel to each other (tilted antiparallel), ii) tilted in relation to the cationic layer and parallel to each other (tilted parallel), and iii) planar in relation to the cationic layer and antiparallel to each other (planar antiparallel). After building the initial supercells, Born−Oppenheimer AIMD simulations were performed at constant temperature (300 K), fixing the positions of aluminum and zinc atoms, and maintaining the supercell vectors also constant. The time step was 1.2 fs and the total time of simulation was 12 ps, which were chosen according to the procedure adopted by other authors to study the same type of materials12. The temperature was controlled using the Berendsen barostat. The most energetically favorable structure from the MD results, together with structures obtained at specific time frames (0, 3, 6, 9 and 12 ps) were chosen for total geometry optimization, allowing the positions of all atoms and the cell vectors to relax.
DOI: 10.17632/c86vtss7ft
title: Dataset 4S.1: Solutions files, sigma = 100, part 1 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All (non-final) posreal counts files for Paramotopy runs with \sigma = 100.
DOI: 10.17632/hxzn288wvx
title: LAPR2_DefaultSkills_DAB_2019-2020

description: Repositório de Mendeley para LAPR2
DOI: 10.17632/3chkfjxxk5
title: Agile practices adoption by Argentine software organizations

description: These datasets contains the results of a study on Argentine software organizations. They are used in a proposal for an Ontology-based Agile Practices Recommendation System.
DOI: 10.17632/6bgkd9ycrt
title: Data for: Cu adsorption onto ammonia oxidizing bacteria and archaea

description: Copper adsorption data onto Nitrosomonas europaea, Nitrosococcus oceani, and Nitrosopumilus maritimus SCM1.
DOI: 10.17632/k3vjmz4vxd
title: S.Lee_Feb20
DOI: 10.17632/vhsynj534s
title: Maple procedures for the coupling of angular momenta. VI. LS–jj transformations

description: Abstract Transformation matrices between different coupling schemes are required, if a reliable classification of the level structure is to be obtained for open-shell atoms and ions. While, for instance, relativistic computations are traditionally carried out in jj-coupling, a LSJ coupling notation often occurs much more appropriate for classifying the valence-shell structure of atoms. Apart from the (known) transformation of single open shells, however, further demand on proper transformation coeffic... Title of program: RACAH Catalogue Id: ADFV_v6_0 [ADQP] Nature of problem For open-shell atoms and ions, a reliable classification of the level structure often requires the knowledge of the LS-jj transformation matrices in order to find the main components of the wave functions as well as their proper spectroscopic notation. Apart from the transformation of individual (sub-)shell states, matrices of much larger complexity arise for the transformation of symmetry-adapted configuration state functions which are constructed from the coupling of two or more open shells. Versions of this program held in the CPC repository in Mendeley Data ADFV_v1_0; Racah; 10.1016/S0010-4655(97)00032-5 ADFV_v2_0; Racah; 10.1016/S0010-4655(98)00021-6 ADFV_v3_0; RACAH; 10.1016/S0010-4655(00)00234-4 ADFV_v4_0; RACAH; 10.1016/S0010-4655(01)00218-1 ADFV_v5_0; RACAH; 10.1016/S0010-4655(01)00219-3 ADFV_v6_0; RACAH; 10.1016/S0010-4655(02)00591-X ADFV_v7_0; RACAH; 10.1016/S0010-4655(03)00227-3 ADFV_v8_0; RACAH; 10.1016/j.cpc.2004.11.003 ADFV_v9_0; RACAH; 10.1016/j.cpc.2005.12.008 ADFV_v10_0; RACAH; 10.1016/j.cpc.2009.06.018 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/txt7ks2zbv
title: Algal weights in quadrats from a survey at Furbo, County Galway, Ireland

description: Quadrat biomass data with spatial references
DOI: 10.17632/97gpjjms4v
title: Dataset 4G.2: Solutions files, sigma = 1.25, part 2 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All final posreal counts files for Paramotopy runs with \sigma = 1.25.