cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.f2vrxb
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argyropelecus affinis Garman, 1899",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 36 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038862-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3726187_d12.v1
title: Additional file 3: of Gene and protein analysis reveals that p53 pathway is functionally inactivated in cytogenetically normal Acute Myeloid Leukemia and Acute Promyelocytic Leukemia

description: The list of 1153 p53 pathway related genes. (XLS 308 kb)
DOI: 10.6084/m9.figshare.c.3726232_d1.v1
title: Additional file 1: Table S1. of Stable high-level expression of factor VIII in Chinese hamster ovary cells in improved elongation factor-1 alpha-based system

description: Primers for Q-PCR. Sequences of primers, used for Q-PCR experiments. (RTF 76 kb)
DOI: 10.6084/m9.figshare.c.3726235_d1.v1
title: Additional file 1: Table S1. of Species-specific ecological niche modelling predicts different range contractions for Lutzomyia intermedia and a related vector of Leishmania braziliensis following climate change in South America

description: Compiled presence records of Lutzomyia intermedia and Lutzomyia neivai. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3726187_d12
title: Additional file 3: of Gene and protein analysis reveals that p53 pathway is functionally inactivated in cytogenetically normal Acute Myeloid Leukemia and Acute Promyelocytic Leukemia

description: The list of 1153 p53 pathway related genes. (XLS 308 kb)
DOI: 10.6084/m9.figshare.c.3726232_d1
title: Additional file 1: Table S1. of Stable high-level expression of factor VIII in Chinese hamster ovary cells in improved elongation factor-1 alpha-based system

description: Primers for Q-PCR. Sequences of primers, used for Q-PCR experiments. (RTF 76 kb)
DOI: 10.6084/m9.figshare.c.3726235_d1
title: Additional file 1: Table S1. of Species-specific ecological niche modelling predicts different range contractions for Lutzomyia intermedia and a related vector of Leishmania braziliensis following climate change in South America

description: Compiled presence records of Lutzomyia intermedia and Lutzomyia neivai. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3727513_d3.v1
title: Additional file 12 of The autophagy interaction network of the aging model Podospora anserina

description: Co-expressed genes. All co-expressed gene pairs deduced from the predicted PPI network and the former longitudinal transcriptome analysis, including the IDs of the genes and the Pearson correlation coefficient. The identifiers for P. anserina proteins were adopted from the P. anserina genome database. (XLS 48 kb)
DOI: 10.6084/m9.figshare.c.3727522_d2.v1
title: MOESM2 of Critical Assessment of Small Molecule Identification 2016: automated methods

description: Additional file 2. Table A1 ESD file used in MS-FINDER version 1.62 for a total of 220,212 compounds. Additional columns for InChIKey, short InChIKey, exact mass, formula, SMILES are not shown here. The use of N/A and a database identifier represents the presence or absence of a compound in a given database. For example, 1,3-butadiyne is only present in ChEBI database (CHEBI:37820). This ESD file was replaced by a dummy file where all HMDB identifiers were modified to dummy identifiers AV001... AV00n and all other identifiers replaced by -1 or N/A. Table A2: Formatted ESD file for CASMI 2016 Category 2 Challenge-001. The first 10 compounds from the candidates list for Challenge-001 are listed above. Columns for InChIKey, short InChIKey, PubChem CID, exact mass, formula, SMILES are shown in this table. Databases from BMDB through PubChem are replaced by dummy information.
DOI: 10.6084/m9.figshare.c.3727504_d3
title: Additional file 3: Table S2. of Genetic pleiotropy between age-related macular degeneration and 16 complex diseases and traits

description: Detailed list of the genetic variants extracted from all studies. Contains multiple tabs. (XLSX 671Â kb)
DOI: 10.6084/m9.figshare.c.3727504_d3.v1
title: Additional file 3: Table S2. of Genetic pleiotropy between age-related macular degeneration and 16 complex diseases and traits

description: Detailed list of the genetic variants extracted from all studies. Contains multiple tabs. (XLSX 671Â kb)
DOI: 10.6084/m9.figshare.c.3727522_d2
title: MOESM2 of Critical Assessment of Small Molecule Identification 2016: automated methods

description: Additional file 2. Table A1 ESD file used in MS-FINDER version 1.62 for a total of 220,212 compounds. Additional columns for InChIKey, short InChIKey, exact mass, formula, SMILES are not shown here. The use of N/A and a database identifier represents the presence or absence of a compound in a given database. For example, 1,3-butadiyne is only present in ChEBI database (CHEBI:37820). This ESD file was replaced by a dummy file where all HMDB identifiers were modified to dummy identifiers AV001... AV00n and all other identifiers replaced by -1 or N/A. Table A2: Formatted ESD file for CASMI 2016 Category 2 Challenge-001. The first 10 compounds from the candidates list for Challenge-001 are listed above. Columns for InChIKey, short InChIKey, PubChem CID, exact mass, formula, SMILES are shown in this table. Databases from BMDB through PubChem are replaced by dummy information.
DOI: 10.6084/m9.figshare.c.3727513_d3
title: Additional file 12 of The autophagy interaction network of the aging model Podospora anserina

description: Co-expressed genes. All co-expressed gene pairs deduced from the predicted PPI network and the former longitudinal transcriptome analysis, including the IDs of the genes and the Pearson correlation coefficient. The identifiers for P. anserina proteins were adopted from the P. anserina genome database. (XLS 48 kb)
DOI: 10.15468/dl.mq9zcd
title: Occurrence Download

description: A dataset containing 3810 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Scorzoneroides montana (Lam.) Holub, Leontodon montanus subsp. montanus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 3810 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038863-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3727504_d4.v1
title: Additional file 4: Table S3. of Genetic pleiotropy between age-related macular degeneration and 16 complex diseases and traits

description: Pathway enrichment analysis results and parameters. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3727513_d4.v1
title: Additional file 1 of The autophagy interaction network of the aging model Podospora anserina

description: Nucleotide sequence of the vector pLexA-DIR. The sequence is provided as text-based FASTA file. (FASTA 6 kb)
DOI: 10.6084/m9.figshare.c.3727531_d1.v1
title: Additional file 10: Table S8. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: Optimal number of classes selected for each model of each zebrafish chromosome. The number of segment classes selected for each zebrafish chromosome and the conservation level and GC content of each class. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3727531_d1
title: Additional file 10: Table S8. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: Optimal number of classes selected for each model of each zebrafish chromosome. The number of segment classes selected for each zebrafish chromosome and the conservation level and GC content of each class. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3727504_d4
title: Additional file 4: Table S3. of Genetic pleiotropy between age-related macular degeneration and 16 complex diseases and traits

description: Pathway enrichment analysis results and parameters. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3727513_d5.v1
title: Additional file 2 of The autophagy interaction network of the aging model Podospora anserina

description: Nucleotide sequence of the vector pGAD-HA. The sequence is provided as text-based FASTA file. (FASTA 8 kb)
DOI: 10.6084/m9.figshare.c.3727513_d4
title: Additional file 1 of The autophagy interaction network of the aging model Podospora anserina

description: Nucleotide sequence of the vector pLexA-DIR. The sequence is provided as text-based FASTA file. (FASTA 6 kb)
DOI: 10.6084/m9.figshare.c.3727513_d6.v1
title: Additional file 3 of The autophagy interaction network of the aging model Podospora anserina

description: Yeast two-hybrid analysis. The results of the yeast two-hybrid analysis including the accession ID, the number of clones, the trivial names, and the putative function. For each prey clone of the non-singletons the position of the first amino acid is given in a separate sheet. In addition, the file contains each edge and node of the hybrid network, which was deduced from the interactions of the yeast two-hybrid analysis and the corresponding homologous proteins from yeast and human (see Additional file 10: Figure S1). Two edge types can be distinguished. First, edges indicating an interaction, where the source and the target node correspond to proteins in the same species. Second, edges indicating a homologous relation, where the source protein belongs to P. anserina and the target protein to yeast or human. UniProt accession numbers were used as identifiers for proteins of yeast and human. The identifiers for P. anserina proteins were adopted from the P. anserina genome database [10]. Species were distinguished by their NCBI taxonomy IDs: Homo sapiens (9606), Podospora anserina (5145) and Saccharomyces cerevisiae S288c (559292). (XLS 88 kb)
DOI: 10.6084/m9.figshare.c.3727642_d3.v1
title: Additional file 3: Table S4. of Combined target site (kdr) mutations play a primary role in highly pyrethroid resistant phenotypes of Aedes aegypti from Saudi Arabia

description: Genotypes of females surviving long (4 or 6Â h) exposure or killed by short (1Â h exposure). (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3727531_d7
title: Additional file 5: Table S5. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: Intergenic PFEs identified in genome-wide analysis. For each intergenic PFE overlap with Evofold or RNAz predictions, DNaseI footprint data, entry in the fRNAdb, or previous lncRNA publications is presented. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3727642_d3
title: Additional file 3: Table S4. of Combined target site (kdr) mutations play a primary role in highly pyrethroid resistant phenotypes of Aedes aegypti from Saudi Arabia

description: Genotypes of females surviving long (4 or 6Â h) exposure or killed by short (1Â h exposure). (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3727531_d9.v1
title: Additional file 7: Table S7. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: Supporting evidence for PFEs identified in pathway-focussed analysis. For each PFE identified in the pathway focussed analysis overlap with Evofold or RNAz predictions, DNaseI footprint data, or entry in the fRNAdb is presented (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3727531_d8.v1
title: Additional file 6: Table S6. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: UCSC genomic coordinates of PFEs identified in pathway-focussed analysis. The genomic coordinates in both the zebrafish and human genomes are provided for each of the PFEs identified in the pathway focussed analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3727531_d8
title: Additional file 6: Table S6. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: UCSC genomic coordinates of PFEs identified in pathway-focussed analysis. The genomic coordinates in both the zebrafish and human genomes are provided for each of the PFEs identified in the pathway focussed analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3727531_d9
title: Additional file 7: Table S7. of Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach

description: Supporting evidence for PFEs identified in pathway-focussed analysis. For each PFE identified in the pathway focussed analysis overlap with Evofold or RNAz predictions, DNaseI footprint data, or entry in the fRNAdb is presented (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3728674_d8.v1
title: Additional file 3: Table S2. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Genes associated with age-related hypomethylation. (XLSX 284 kb)
DOI: 10.6084/m9.figshare.c.3728674_d8
title: Additional file 3: Table S2. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Genes associated with age-related hypomethylation. (XLSX 284 kb)
DOI: 10.15468/dl.p2d4q5
title: Occurrence Download

description: A dataset containing 357 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argyropelecus gigas Norman, 1930",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 357 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038864-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3728674_d9.v1
title: Additional file 4: Table S3. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Genes associated with age-related hypermethylation. (XLSX 396 kb)
DOI: 10.6084/m9.figshare.c.3728674_d9
title: Additional file 4: Table S3. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Genes associated with age-related hypermethylation. (XLSX 396 kb)
DOI: 10.6084/m9.figshare.c.3728674_d10.v1
title: Additional file 5: Table S4. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment for genes associated with age-related hypermethylation. (XLSX 94 kb)
DOI: 10.6084/m9.figshare.c.3728710_d1.v1
title: Additional file 1: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

description: Supplementary dataset 1. WGBS alignment statistics for the Ames and WT data. (XLSX 11 kb)
DOI: 10.2905/730f5fd1-acea-4ce8-96b7-7276443eeaaa
title: Non-Energy Use Matrix (TJ)

description: FIGARO-E3 Non-Energy Use table in terajoules for year 2015 in matrix form.
DOI: 10.6084/m9.figshare.c.3728674_d10
title: Additional file 5: Table S4. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment for genes associated with age-related hypermethylation. (XLSX 94 kb)
DOI: 10.6084/m9.figshare.c.3728710_d1
title: Additional file 1: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

description: Supplementary dataset 1. WGBS alignment statistics for the Ames and WT data. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3730969_d3.v1
title: Additional file 3: of Highly localized divergence within supergenes in Atlantic cod (Gadus morhua) within the Gulf of Maine

description: List of genes found within LD block of LG12. GFF file containing the gene ID, positions, and gene names of the 437 genes found within this linkage disequilibrium block. (TXT 166 kb)
DOI: 10.6084/m9.figshare.c.3730972_d3.v1
title: Additional file 12: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_H2171_BRD4_MED1_H3K27Ac. (BED 53 kb)
DOI: 10.6084/m9.figshare.c.3730975_d2
title: Additional file 2: Table S2. of Aberrant expression of ALK and EZH2 in Merkel cell carcinoma

description: The normalized RNA expression data. The table presents the normalized RNA expression data recorded in this study. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3730969_d3
title: Additional file 3: of Highly localized divergence within supergenes in Atlantic cod (Gadus morhua) within the Gulf of Maine

description: List of genes found within LD block of LG12. GFF file containing the gene ID, positions, and gene names of the 437 genes found within this linkage disequilibrium block. (TXT 166 kb)
DOI: 10.6084/m9.figshare.c.3730972_d3
title: Additional file 12: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_H2171_BRD4_MED1_H3K27Ac. (BED 53 kb)
DOI: 10.6084/m9.figshare.c.3730972_d4.v1
title: Additional file 13: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_H2171_BRD4. (BED 1857 kb)
DOI: 10.6084/m9.figshare.c.3730972_d4
title: Additional file 13: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_H2171_BRD4. (BED 1857 kb)
DOI: 10.6084/m9.figshare.c.3730972_d5.v1
title: Additional file 14: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_H2171_H3K27Ac. (BED 88 kb)
DOI: 10.6084/m9.figshare.c.3730972_d5
title: Additional file 14: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_H2171_H3K27Ac. (BED 88 kb)
DOI: 10.6084/m9.figshare.c.3731086_d2.v1
title: Additional file 11: of Revealing cancer subtypes with higher-order correlations applied to imaging and omics data

description: Table S1. P-values from Ď  2 tests on all the data types. (XLSX 41 kb)
DOI: 10.15468/dl.7m5vnw
title: Occurrence Download

description: A dataset containing 817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argyropelecus hemigymnus Cocco, 1829",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 817 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038865-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3731086_d2
title: Additional file 11: of Revealing cancer subtypes with higher-order correlations applied to imaging and omics data

description: Table S1. P-values from Ď  2 tests on all the data types. (XLSX 41 kb)
DOI: 10.57754/fdat.s3ce3-1ak11
title: Gedichtkorpus Dickinson / Donne / Shakespeare I

description: The corpus of Dickinson, Donne, and Shakespeare consists of the poems "My life has stood", "He fumbles at your soul", "This was a poet", "If it had no pencil", "I am nobody", and "Batter my heart" and forms the basis of the analysis and further annotation.
description: Research carried out in work package A02 of the SFB 833.
DOI: 10.15468/dl.f8d3gz
title: Occurrence Download

description: A dataset containing 676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Scrophularia oblongifolia Loisel., Scrophularia aquatica subsp. oblongifolia (Loisel.) P.Fourn.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 676 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038866-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3733138_d11.v1
title: Additional file 6: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: 150 most highly expressed fungal genes (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3733183_d1.v1
title: Additional file 1: of Analytical characteristics and comparative evaluation of Aptima HCV quant Dx assay with the Abbott RealTime HCV assay and Roche COBAS AmpliPrep/COBAS TaqMan HCV quantitative test v2.0

description: Method comparison Aptima Abbott Roche. Supplemental data for VJ publication. (ZIP 16232 kb)
DOI: 10.6084/m9.figshare.c.3733138_d12.v1
title: Additional file 7: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: Fungal genes controlled by Cptf1 (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3733138_d13.v1
title: Additional file 8: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: Predicted Claviceps purpurea effectors (XLSX 106 kb)
DOI: 10.6084/m9.figshare.c.3733138_d11
title: Additional file 6: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: 150 most highly expressed fungal genes (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3733183_d1
title: Additional file 1: of Analytical characteristics and comparative evaluation of Aptima HCV quant Dx assay with the Abbott RealTime HCV assay and Roche COBAS AmpliPrep/COBAS TaqMan HCV quantitative test v2.0

description: Method comparison Aptima Abbott Roche. Supplemental data for VJ publication. (ZIP 16232 kb)
DOI: 10.6084/m9.figshare.c.3733138_d12
title: Additional file 7: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: Fungal genes controlled by Cptf1 (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3733138_d13
title: Additional file 8: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: Predicted Claviceps purpurea effectors (XLSX 106 kb)
DOI: 10.6084/m9.figshare.c.3733987_d1.v1
title: Additional file 1: DATA EXCEL. of Expression of human epidermal growth factor receptor 2 in bladder urothelial carcinoma

description: data generated/analysed during the study. (XLSX 13Â kb)
DOI: 10.5281/zenodo.14506384
title: ℓ0-GSNTD

description: All datasets used in the experiments of the Graph regularized sparse nonnegative Tucker decomposition with ℓ0-constraints for unsupervised learning.
DOI: 10.5281/zenodo.14506435
title: ℓ0-GSNTD

description: All datasets used in the experiments of the Graph regularized sparse nonnegative Tucker decomposition with ℓ0-constraints for unsupervised learning.
DOI: 10.6084/m9.figshare.c.3733987_d1
title: Additional file 1: DATA EXCEL. of Expression of human epidermal growth factor receptor 2 in bladder urothelial carcinoma

description: data generated/analysed during the study. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3734155_d2
title: Additional file 2: of Discrimination of three genetically close Aspergillus species by using high resolution melting analysis applied to indoor air as case study

description: Alignment of the 20 Aspergillus strains used for the HRM development (XLSX 3516Â kb)