cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.m6ryfx
title: Occurrence Download

description: A dataset containing 2191 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Nemastoma bimaculatum (Fabricius, 1775)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 2191 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080871-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtrv9u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Plectogona sanfilippoi (Manfredi, 1956)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080872-240626123714530/datasets/export for details.
DOI: 10.15468/dl.xnnbqs
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Neosphaleroptera nubilana (Hübner, 1796-1799)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 360 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080874-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pbax4
title: Occurrence Download

description: A dataset containing 29906 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Hippodamia variegata (Goeze, 1777)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29906 records from 579 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080873-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uenpc5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Plectogona bonzanoi (Strasser, 1975)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080875-240626123714530/datasets/export for details.
DOI: 10.15468/dl.tsmup5
title: Occurrence Download

description: A dataset containing 379862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (DEU.10.49_1, DEU.10.7_1, DEU.10.17_1)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 379862 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080860-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zny63q
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Homonotus sanguinolentus (Fabricius, 1793)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 117 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080876-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhua38
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Iulogona hamuligerum (Verhoeff, 1913)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080878-240626123714530/datasets/export for details.
DOI: 10.15468/dl.emqscq
title: Occurrence Download

description: A dataset containing 29906 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Hippodamia variegata (Goeze, 1777)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29906 records from 579 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080877-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgkshr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Iulogona apenninorum (Verhoeff, 1913)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080880-240626123714530/datasets/export for details.
DOI: 10.25345/c53776653
title: MassIVE MSV000095680 - E. coli leverages growth arrest to remodel its proteome upon entry into starvation
title: It is widely believed that, owing to the limitation of nutrients in natural environments, bacteria spend most of their life in a non-growing state. However, despite its major clinical and ecological implications, very little is known about what determines the phenotype of starved bacteria, in particular what controls the concentration of different gene products inside the cells. Using microfluidics and quantitative fluorescence microscopy, we monitored growth and gene expression in many independent E. coli lineages as we switched them from exponential growth to starvation. We observed that all cells stopped growing immediately and that no cell death occurred for more than two days. At the same time, gene expression undergoes a dramatic remodeling upon entry into starvation in a promoter-dependent manner. Some promoters, including ribosomal protein promoters, arrest gene expression immediately, others show a slow exponential decay of expression on a 10 h time scale, while a third category exhibits a transient burst of activity before decaying exponentially. Remarkably, the time dynamics of these changes are highly homogeneous across single cells. In addition, we demonstrated that the gene expression response does not qualitatively depend on the dynamics of starvation entry. Combining the observed time-dependent protein production and decay rates, we showed with mathematical modeling that a delay between growth arrest and shutdown of gene expression allows a massive increase in the concentration of certain proteins without requiring an upregulation of their expression. Moreover, protein concentrations deep in starvation appeared to be mainly determined by the expression dynamics during the first 10 h of starvation. Finally, we established that this expression program at the onset of starvation is critical for cell viability. In particular, by inhibiting gene expression during different periods of starvation, we were able to show that the tolerance to stress after 2 days is determined by gene expression occurring during the first 10 h, which thus constitutes a preventive response. These results provide a starting point for quantitative studies of cell maintenance and the emergence of specific phenotypes when nutrients become scarce.
DOI: 10.5281/zenodo.13364756
title: Example Dataset for npstat: Population genetics from Pooled NGS data NPStat v1: User guide

description: Example Dataset for npstat to test the program and the different options.

The example dataset contains a pileup file with sequences of of the 2L chromosome from fifteen pooled inbreed individuals of Drosophila melanogaster (doi: 10.1038/nature10811). The dataset also contains the sequence reference of the 2L chromosome  in fasta format, an outgroup sequence in fasta format of D. yakuba (SRR26246471), a GFF3 annotation file and a file with a brief list of selected SNPs to be analyzed.
DOI: 10.5281/zenodo.13364757
title: Example Dataset for npstat: Population genetics from Pooled NGS data NPStat v1: User guide

description: Example Dataset for npstat to test the program and the different options.

The example dataset contains a pileup file with sequences of of the 2L chromosome from fifteen pooled inbreed individuals of Drosophila melanogaster (doi: 10.1038/nature10811). The dataset also contains the sequence reference of the 2L chromosome  in fasta format, an outgroup sequence in fasta format of D. yakuba (SRR26246471), a GFF3 annotation file and a file with a brief list of selected SNPs to be analyzed.
DOI: 10.5517/ccdc.csd.cc28mqtg
title: CCDC 2104336: Experimental Crystal Structure Determination

description: Related Article: Nils Boysen, Anish Philip, Detlef Rogalla, Maarit Karppinen, Anjana Devi|2022|Chem.-Eur.J.|28|e202103798|doi:10.1002/chem.202103798
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28mqvh
title: CCDC 2104337: Experimental Crystal Structure Determination

description: Related Article: Nils Boysen, Anish Philip, Detlef Rogalla, Maarit Karppinen, Anjana Devi|2022|Chem.-Eur.J.|28|e202103798|doi:10.1002/chem.202103798
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28mqwj
title: CCDC 2104338: Experimental Crystal Structure Determination

description: Related Article: Nils Boysen, Anish Philip, Detlef Rogalla, Maarit Karppinen, Anjana Devi|2022|Chem.-Eur.J.|28|e202103798|doi:10.1002/chem.202103798
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28mqxk
title: CCDC 2104339: Experimental Crystal Structure Determination

description: Related Article: Nils Boysen, Anish Philip, Detlef Rogalla, Maarit Karppinen, Anjana Devi|2022|Chem.-Eur.J.|28|e202103798|doi:10.1002/chem.202103798
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28mqzm
title: CCDC 2104341: Experimental Crystal Structure Determination

description: Related Article: Nils Boysen, Anish Philip, Detlef Rogalla, Maarit Karppinen, Anjana Devi|2022|Chem.-Eur.J.|28|e202103798|doi:10.1002/chem.202103798
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28mr1q
title: CCDC 2104343: Experimental Crystal Structure Determination

description: Related Article: Nils Boysen, Anish Philip, Detlef Rogalla, Maarit Karppinen, Anjana Devi|2022|Chem.-Eur.J.|28|e202103798|doi:10.1002/chem.202103798
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28mr2r
title: CCDC 2104344: Experimental Crystal Structure Determination

description: Related Article: Nils Boysen, Anish Philip, Detlef Rogalla, Maarit Karppinen, Anjana Devi|2022|Chem.-Eur.J.|28|e202103798|doi:10.1002/chem.202103798
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.6racqh
title: Occurrence Download

description: A dataset containing 29906 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Hippodamia variegata (Goeze, 1777)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29906 records from 579 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080881-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/ieda/100408
title: Endeavour segment ISS (Integrated Study Site) basalt geochemical analyses

description: ***Attention: there is a newer version of this dataset available at http://dx.doi.org/10.1594/IEDA/111213.*** Excel spreadsheet of &gt;300 major, trace, and isotope analyses of basalt lavas from the Endeavour segment of the Juan de Fuca Ridge. Most samples were collected by submersible and a location map on &lt;1m resolution bathymetry is provided. Most samples are Holocene in age, and all analyses are normalized to common values. Basalts range in composition from highly depleted to highly enriched at short spatial and temporal scale.
DOI: 10.1594/ieda/100407
title: Endeavour segment ISS (Integrated Study Site) high-resolution map of the location of analyzed basalt samples

description: ***Attention: there is a newer version of this dataset available at http://dx.doi.org/10.1594/IEDA/111214.*** The map shows the location of &gt;300 basalt samples for which chemical analyses also are available. The samples were collected by submersible, the bathymetry is at &lt;1m resolution, and the sample locations and bathymetry have been reconciled to &lt;10m accuracy. Photographs of samples and their locations are available at MBARI.
DOI: 10.1594/ieda/100404
title: Central America Volcanoes: Cerro Negro, Ilopango, Irazu, Telica, and Turrialba

description: Short write-ups and KML files of five volcanoes from the RU_CAGeoChem (Rutgers University Central America Geochemistry) database. The write-ups are general descriptions, aimed at the undergraduate level. They are background material for a MARGINS mini-lesson being created by Bob Stern and others. The KML files, when opened in Google Earth, show the sample locations. The volcanoes were selected to cover a range of compositions from basalt at Cerro Negro and Irazu, to rhyodacite at Ilopango. There is also a very large volcano, Irazu, a very small one, Cerro Negro, an intermediate size one, Telica, and a caldera, IIlopango. Turrialba has returned to activity after a long quiescence and so the Rutgers sample locations were placed in a kml file as well as a short description.
DOI: 10.1594/ieda/100403
title: RU_CAGeochem v.2, a database and sample repository for Central American volcanic rocks at Rutgers University

description: We present version 2 of a database for Central American volcanic rocks and related components. The Rutgers University Central American Geochemical data (RU_CAGeochem) includes the active volcanoes related to the Cocos-Caribbean convergent plate boundary that extends from Guatemala to Costa Rica in Central America. The RU prefix signifies that the data and/or samples are primarily from the long-term Central American research project started at Dartmouth College in 1970 and continued at Rutgers University between 1974 to the present. The database is decidedly uneven because of the impressive improvement of analytical techniques during the period of sample and data production. Further complications arise because most of the sampling and analysis were part of the educational process for many different undergraduate and graduate students using different types of instruments. This note presents, as a reasonably coherent whole, geochemical data and metadata for about 1325 samples collected by at least 40 students and colleagues. Many new Sr, Nd and Pb isotopic ratios are included here but most of the new data are metadata that provide greatly improved descriptions of the locations and status of the samples as well as estimates of data quality.

Version 2 includes updated, more precise geocoordinates, and additional descriptive metadata: Lcode, Unit, and Relative position that allow definition of units (Lcode, Unit) and stratigraphic position.
description: Carr, M. J., Feigenson, M. D., Bolge, L. L., Walker, J. A. and Gazel, E. (2014), RU_CAGeochem, a database and sample repository for Central American volcanic rocks at Rutgers University. Geoscience Data Journal.
DOI: 10.1594/ieda/100275
title: Data Report Stable Isotope Analysis: Bangladesh O18_06_2012

description: Delta-18O and Delta-D ratio measurements of groundwater from the "Bangladesh O18_06_2012" project.  20 samples collected in June/2012 in Bangladesh.
DOI: 10.1594/ieda/100280
title: Data Report Stable Isotope Analysis: HLY1003

description: Delta-18O and Delta-D ratio measurements of water from the "HLY1003" project.  155 samples collected in September 2009 on the research vessel Healy in the Beaufort Sea/Arctic Ocean.
DOI: 10.1594/ieda/100276
title: Data Report Stable Isotope Analysis: Bangladesh O18_09_2012

description: Delta-18O and Delta-D ratio measurements of groundwater from the "Bangladesh O18_09_2012" project.  20 samples collected in July/2012 in Bangladesh.
DOI: 10.1594/ieda/100277
title: Data Report Stable Isotope Analysis: Iceland-2012

description: Delta-18O and Delta-D ratio measurements of groundwater from the "Bangladesh O18_09_2012" project.  11 samples collected in May/2012 in Iceland.
DOI: 10.1594/ieda/100272
title: Data Report Stable Isotope Analysis: NBP0702

description: Delta-18O and Delta-D ratio measurements of water from the "NBP0702" project.  493 samples collected from Nov, 2011 to March 2012 on the research ship R/V Nathaniel B. Palmer in the Amundsen Sea.
DOI: 10.1594/ieda/100274
title: Data Report Stable Isotope Analysis: Bangladesh_O18_2012

description: Delta-18O and Delta-D ratio measurements of groundwater from the "Bangladesh O18 2012" project.  278 samples collected from 2009 to 2011 in Bangladesh.
DOI: 10.1594/ieda/100273
title: Data Report Stable Isotope Analysis: Bangladesh O18

description: Delta-18O and Delta-D ratio measurements of groundwater from the "Bangladesh O18" project.  278 samples collected from 2009 to 2011 in Bangladesh.
DOI: 10.1594/ieda/100282
title: Data Report Stable Isotope Analysis: Rockland_Groundwater

description: Delta-18O and Delta-D ratio measurements of groundwater from the "Rockland_Groundwater" project.  85 samples collected in Rockland county, USA
DOI: 10.1594/ieda/100281
title: Data Report Stable Isotope Analysis: AU1121

description: Delta-18O and Delta-D ratio measurements of water from the "AU1121" project.  455 samples collected in 2010/2011 on the research vessel Aurora Australis along parts of the Antarctic continental margin.
DOI: 10.1594/ieda/100278
title: Data Report Stable Isotope Analysis: Switchyard-12

description: Delta-18O and Delta-D ratio measurements of water from the "Switchyard-12" project.  160 samples collected in April to May, 2012 in the Arctic Ocean.
DOI: 10.1594/ieda/100279
title: Data Report Stable Isotope Analysis: Vietnam_Rainwater_2012

description: Delta-18O and Delta-D ratio measurements of rain water from the "Vietnam_Rainwater_2012" project.  322 samples collected in 2009 to 2010 in Vietnam.
DOI: 10.1594/ieda/100271
title: Glass compositions for Axial Seamount samples

description: ***There is a newer version of this file that updates the Primary Method Metadata tab.*** Major element compositions of glass from lava samples from Axial Seamount, Juan de Fuca Ridge, determined by electron microprobe. Samples were collected between 2005 and 2011 by ROVs and wax-tipped rock corer. The data were used in conjunction with high-resolution AUV bathymetry, ROV observations, and age dating of foraminifera in sediment cores to develop a geologic history of Axial Seamount.
description: Clague, D.A., B.M. Dreyer, J.B. Paduan, J.F. Martin, W.W. Chadwick Jr., D.W. Caress, R.A. Portner, T.P. Guilderson, M.L. McGann, H. Thomas, D.A. Butterfield, and R.W. Embley (in revision) "Geologic History of the Summit of Axial Seamount, Juan de Fuca Ridge", Geochem. Geophys. Geosyst.
DOI: 10.1594/ieda/100283
title: Data Report Stable Isotope Analysis: Switchyard-11

description: Delta-18O and Delta-D ratio measurements of water from the "Switchyard-11" project.  188 samples collected in May, 2011 in the Arctic Ocean.