cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qcebfw
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007161-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjaa5k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bryozoa",
 "DatasetKey is National Invasive Species Database",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220005-230224095556074/datasets/export for details.
DOI: 10.15468/dl.yfwifd
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001990-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9g79nw
title: Occurrence Download

description: A dataset containing 1176587274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2001-2020"
 ]
}

 The dataset includes 1176587274 records from 15990 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107906-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18526760
title: CPL-Code: a corpus annotated with bioinformatics tools names in executable code of Nextflow workflows

description: CPL-Code is a corpus describing bioinformatics tools names in executable code of Nextflow workflows. These annotations are available in the BRAT Rapid Annotation Tool (BRAT) standoff format (https://brat.nlplab.org/standoff.html).


This corpus is composed of 797 processes related to Nextflow workflows randomly selected from Github with a total of 78,562 tokens and 1,914 annotated tokens corresponding to 1,911 tool occurences (421 unique tools).

 

Repository organisation

The articles are separated into six different directories:






Five folders (iteration_{i}) are provided, each corresponding to a different split of the training data. This allows experiments to be run on different splits.

The last folder contains five articles used for testing.




Contact


Clémence Sebe, clemence.sebe@universite-paris-saclay.fr


Funding


This work received support from the National Research Agency under the France 2030 program, with reference to ANR-22-PESN-0007.
DOI: 10.15468/dl.rzk3sa
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Eichhornia crassipes"
 ]
}

 The dataset includes 88 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023843-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18526759
title: CPL-Code: a corpus annotated with bioinformatics tools names in executable code of Nextflow workflows

description: CPL-Code is a corpus describing bioinformatics tools names in executable code of Nextflow workflows. These annotations are available in the BRAT Rapid Annotation Tool (BRAT) standoff format (https://brat.nlplab.org/standoff.html).


This corpus is composed of 797 processes related to Nextflow workflows randomly selected from Github with a total of 78,562 tokens and 1,914 annotated tokens corresponding to 1,911 tool occurences (421 unique tools).

 

Repository organisation

The articles are separated into six different directories:






Five folders (iteration_{i}) are provided, each corresponding to a different split of the training data. This allows experiments to be run on different splits.

The last folder contains five articles used for testing.




Contact


Clémence Sebe, clemence.sebe@universite-paris-saclay.fr


Funding


This work received support from the National Research Agency under the France 2030 program, with reference to ANR-22-PESN-0007.
DOI: 10.15468/dl.zdqm94
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Kochia childsii"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023844-260208012135463/datasets/export for details.
DOI: 10.6084/m9.figshare.31253947
title: Computer Vision Enables Monitoring and Kinetic Analysis of Structurally Diverse Carbon Monoxide Surrogates [machine-readable data]

description: Carbon monoxide (CO) surrogates are valuable synthetic reagents that circumvent the hazards of handling CO gas directly. However, owing to the structural diversity of available surrogates, their varied triggering conditions, and the requirement for sealed reactor systems, quantitative understanding of their CO release kinetics has remained elusive. Here, we report a non-contact computer vision method for monitoring and comparing vessel-specific CO release from ten structurally diverse surrogates in two-chamber COware reactors. By tracking the colorimetric response of a ruthenium-based chemosensor, we establish a scoring system based on cumulative CO flux–from sur-rogate activation through gas-phase mass transfer to sensor capture—benchmarked against a CO balloon reference. This approach reveals a four-fold range in surrogate reactivity scores and enables systematic investigation of how reaction parameters such as base strength, solvent polarity, and stirring rate modulate CO release kinetics. We demonstrate that these kinetic differences translate directly to carbonylation reaction outcomes: in Pd-catalyzed Suzuki–Miyaura carbonylation, surrogate score correlates linearly with product conversion, consistent with an inverse dependence on CO con-centration. The methods presented enable rational surrogate selection and open new possibilities for the quantitative design of synthetic methodologies dependent on controlled gas release.
DOI: 10.6084/m9.figshare.31253947.v2
title: Computer Vision Enables Monitoring and Kinetic Analysis of Structurally Diverse Carbon Monoxide Surrogates [machine-readable data]

description: Carbon monoxide (CO) surrogates are valuable synthetic reagents that circumvent the hazards of handling CO gas directly. However, owing to the structural diversity of available surrogates, their varied triggering conditions, and the requirement for sealed reactor systems, quantitative understanding of their CO release kinetics has remained elusive. Here, we report a non-contact computer vision method for monitoring and comparing vessel-specific CO release from ten structurally diverse surrogates in two-chamber COware reactors. By tracking the colorimetric response of a ruthenium-based chemosensor, we establish a scoring system based on cumulative CO flux–from sur-rogate activation through gas-phase mass transfer to sensor capture—benchmarked against a CO balloon reference. This approach reveals a four-fold range in surrogate reactivity scores and enables systematic investigation of how reaction parameters such as base strength, solvent polarity, and stirring rate modulate CO release kinetics. We demonstrate that these kinetic differences translate directly to carbonylation reaction outcomes: in Pd-catalyzed Suzuki–Miyaura carbonylation, surrogate score correlates linearly with product conversion, consistent with an inverse dependence on CO con-centration. The methods presented enable rational surrogate selection and open new possibilities for the quantitative design of synthetic methodologies dependent on controlled gas release.
DOI: 10.6084/m9.figshare.31253947.v1
title: Computer Vision Enables Monitoring and Kinetic Analysis of Structurally Diverse Carbon Monoxide Surrogates [machine-readable data]

description: Carbon monoxide (CO) surrogates are valuable synthetic reagents that circumvent the hazards of handling CO gas directly. However, owing to the structural diversity of available surrogates, their varied triggering conditions, and the requirement for sealed reactor systems, quantitative understanding of their CO release kinetics has remained elusive. Here, we report a non-contact computer vision method for monitoring and comparing vessel-specific CO release from ten structurally diverse surrogates in two-chamber COware reactors. By tracking the colorimetric response of a ruthenium-based chemosensor, we establish a scoring system based on cumulative CO flux–from sur-rogate activation through gas-phase mass transfer to sensor capture—benchmarked against a CO balloon reference. This approach reveals a four-fold range in surrogate reactivity scores and enables systematic investigation of how reaction parameters such as base strength, solvent polarity, and stirring rate modulate CO release kinetics. We demonstrate that these kinetic differences translate directly to carbonylation reaction outcomes: in Pd-catalyzed Suzuki–Miyaura carbonylation, surrogate score correlates linearly with product conversion, consistent with an inverse dependence on CO con-centration. The methods presented enable rational surrogate selection and open new possibilities for the quantitative design of synthetic methodologies dependent on controlled gas release.
DOI: 10.3535/hr3-frm-ndh
title: Senecio L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5y3-rr4-vj6
title: Sempervivum montanum subsp. stiriacum (Wettst. ex Hayek) Hayek

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ymv-5ss-fa0
title: Vernonia balansae Hieron.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/00e-ep9-e79
title: Viola suavis M. Bieb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5z8-w68-1tf
title: Sebastiania klotzschiana (Müll.Arg.) Müll.Arg.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/j54-s8s-q5z
title: Vaccinium mandarinorum Diels

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zxb-awa-ypa
title: Braya rosea Bunge

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/639-a2p-sq9
title: Galium trifidum subsp. trifidum

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/tv7-wkz-rdc
title: Placynthium petersii (Nyl.) Burnham

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vvv-15n-la2
title: Heliotropium amplexicaule Vahl

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0ee-83v-11z
title: Matayba elaeagnoides Radlk.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w9j-2w5-1yk
title: Sematophyllum leucostomum (Hampe) W.R. Buck

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/s0g-b57-y53
title: Hyphoderma setigerum (Fr.) Donk

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.5281/zenodo.16540429
title: Global Register of Introduced and Invasive Species: GRIIS DwCA

description: Published via GBIF by the Invasive Species Specialist Group (ISSG).  The Global Register of Introduced and Invasive Species (GRIIS) presents validated and verified checklists (inventories) of introduced (alien) and invasive alien species at the country, territory, and associated island level.

Phase 1 of the project focused on developing validated and verified checklists of countries that are Party to the Convention on Biological Diversity (CBD). Phase 2 which is on-going, aims to achieve global coverage including non-party countries and all overseas territories of countries e.g. Netherlands, France and United Kingdom. Species belonging to all Kingdoms are covered as well as occurring in all Environment/systems.

Country/ Territory/ Island checklists are reviewed and verified by networks of country or species experts. Verified checklists/ species records as well as those under review are presented on the online GRIIS website (www.griis.org). Individual species records are flagged with a __yes__ for verification. Only verified checklists/ species records are presented on the GBIF Portal.
https://www.gbif.org/dataset/search?publishing_org=cdef28b1-db4e-4c58-aa71-3c5238c2d0b5
DOI: 10.3535/rsh-xtd-x9z
title: Ilex corallina var. aberrans Hand.-Mazz.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vn8-l5k-94s
title: Indigofera volkensii Taub.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dqk-n8y-nhj
title: Saxifraga granulifera Harry Sm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/k4e-3xg-ltp
title: Garnotia micrantha var. nana Stapf ex Hook.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/a0r-qtf-khw
title: Pueraria montana var. lobata (Willd.) Maesen & S.M.Almeida ex Sanjappa & Predeep

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ccg-w0q-n9q
title: Saxifraga granulifera Harry Sm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9zl-6ms-59m
title: Saxifraga cacuminum Harry Sm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wzx-dd8-57g
title: Agrostis castellana Boiss. & Reut.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pl3-mgw-skq
title: Anthracothecium

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/s4z-9tf-jw7
title: Isodon pleiophyllus (Diels) Kudô

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/51d-xtf-v8a
title: Macaranga caudatifolia Elmer

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jms-aye-m52
title: Krapovickasia flavescens (Cav.) Fryxell

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/v5h-cwn-edp
title: Paspalum humboldtianum Flüggé

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/64x-rjw-4d3
title: Briza media L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/j9y-t12-xev
title: Sphenopholis interrupta subsp. californica (Vasey) Scribn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1je-4hz-z71
title: Lippia asperrima Cham.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pt0-mwa-mtp
title: Saxifraga consanguinea W. W. Sm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bel-274-wx8
title: Saxifraga angustata Harry Sm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/gj2-w91-jes
title: Leskeodon aristatus (Geh. & Hampe) Broth.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.rapyc4
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salmo trutta",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062406-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/7bn-v22-89t
title: Aniselytron treutleri (Kuntze) Soják

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9f8-fvd-nsm
title: Schnabelia oligophylla Hand.-Mazz.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.mbr64b
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salmo trutta",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062407-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/4mw-8wd-1pl
title: Endostemon kelleri (Briq.) Ryding ex A.J.Paton & Harley

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pwh-7my-wgg
title: Centaurea marmorea Bornm. & Soska

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xn6-xr2-zpz
title: Aniselytron treutleri (Kuntze) Soják

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/3re-pey-rdr
title: Axonopus furcatus (Flüggé) Hitchc.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bz5-s5w-0pb
title: Sporobolus aeneus (Trin.) Kunth

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6ar-ecr-mdj
title: Koeleria barbinodis (Trin.) Barberá, Quintanar, Soreng & P.M.Peterson

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xsx-1t2-llv
title: Verrucaria

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.kybkgw
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hydrometra transvaalensis, Sepedon fuscipennis, Sepedon, Adenophlebia sylvatica, Ochrotrichia, Psilopa, Leydigia leydigi, Pristina aequiseta, Pristina longiseta, Pristina sperberae, Palaemon, Elassoneuria trimeniana, Oligoneuriopsis lawrencei, Segmentina planodiscus, Trepobates, Zygonyx natalensis, Elporia flavopicta, Euthraulus bugandensis, Nepa, Metrocoris, Afropsephenoides, Dineutes, Ephoron savignyi, , Simulium milloti, Sialis, Micronecta youngiana, Cheumatopsyche triangularis, Daphnia longispina, Plumatella, Lovenula falcifer, Micronecta hessei, Pseudagrion citricola, Echinisca capensis, Ceratogomphus pictus, Aulophorus furcatus, Gyrinus natalensis, Pantala flavescens, Aprionyx tricuspidatus, , Elporia natalensis, Goerodes caffrariae, Ithytrichia, Simulium cavum, Simulium rutherfoordi, Taeniochauliodes ochraceopennis, Taeniochauliodes, Macrobrachium lepidactylus, , Antocha saxicola, Ictinogomphus, Tubifex tubifex, Laccotrephes, Tubifex natalensis, Ectocyclops phaleratus, Ectocyclops, Schmardaella, Simulium griseicolle, Agapetus agilis, Sciadorus obtusus, Sciadorus, Tomichia ventricosa, Tomichia, Allocnemis leucosticta, Monospilus dispar, Monospilus, Ecchlorolestes, Metalype, , Aliolimnatis africana, Aliolimnatis buntonensis, Aliolimnatis oligodonta, Hirudo, , Barbronia, Aporrectodea trapezoides, Bimastos rubidus, Eiseniella tetraedra, Eiseniella, Alluroides brinkhursti, Alluroides, Standeria transvaalensis, Standeria, Syngenodrilus lamuensis, Syngenodrilus, Callidrilus scrobifer, Allonais paraguayensis, Allonais pectinata, Branchiodrilus cleistochaeta, Chaetogaster limnaei, Allodero bauchiensis, Dero digitata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -28.5786,20.509 -28.5786,20.509 -32.9007,25.5395 -32.9007,25.5395 -28.5786))"
 ]
}

 The dataset includes 33 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062408-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/rgx-rbn-ld2
title: Acalypha macrostachya Jacq.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/thf-ksd-rpt
title: Cryptogonium phyllogonioides (Sull.) Isov.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1mn-s4l-7c7
title: Phleum pratense L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/b6e-yjs-shv
title: Guarea glabra Vahl

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/3eb-fw1-04n
title: Pertusaria

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/l8y-xr3-nw3
title: Alyssum alyssoides (L.) L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5q1-5qy-px2
title: Saxifraga sinomontana J. T. Pan & Gornall

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/d8j-2d3-x75
title: Macaranga sylvatica Elmer

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5jz-bq3-h7a
title: Coleataenia anceps (Michx.) Soreng

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/sty-2fz-c7w
title: Saxifraga sinomontana J. T. Pan & Gornall

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/syd-t0s-v9e
title: Macaranga sylvatica Elmer

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/amq-838-1bp
title: Macaranga sylvatica Elmer

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/f1f-g6e-e97
title: Saxifraga glacialis Harry Sm.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pf5-8j4-cad
title: Saxifraga rosacea Moench

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/v0x-7la-b86
title: Senecio brasiliensis (Spreng.) Less.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bp4-ff9-4sk
title: Aegiphila brachiata Vell.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dhz-lqp-8kr
title: Dolomiaea souliei var. cinerea (Y. Ling) Q. Yuan

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dvp-39s-v7c
title: Passiflora caerulea L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/tmf-lrd-l5x
title: Pertusaria

description: Digital Specimen for the physical specimen hosted at University of Graz.