cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25910/ghrw-5k88
title: Controlled evaLuation of Angiotensin Receptor Blockers for COVID-19 respIraTorY Disease (CLARITY) dataset

description: HeSANDA 1.0.0
description: This dataset includes up to 787 participants receiving an oral angiotensin receptor blocker (no placebo per standard of care in Australia, and telmisartan in India) recruited from seventeen hospitals in India and Australia. Baseline data includes demographics (age, sex, ethnicity, height, and weight), pregnancy status, smoking status, and co-morbidities. Primary follow-up data was collected daily from days 1 to 28 during treatment period and will include clinical outcome (Clinical Health Score), temperature, respiratory measures (oxygen saturation, use of supplemental oxygen), hypotension (vasopressor requirement), incidence of acute kidney injury, and hyperkalaemia (serum potassium concentration of >6.0 mmol/L).
DOI: 10.6084/m9.figshare.12502820
title: Additional file 2 of Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli

description: Additional file 2.
DOI: 10.6084/m9.figshare.12502820.v1
title: Additional file 2 of Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli

description: Additional file 2.
DOI: 10.15468/59biph
title: Phytoseiulus persimilis literature occurrences in a predator-prey system: Phytoseiulus persimilis (Acari: Phytoseiidae) and Tetranychus urticae (Acari: Tetranychidae)

description: The dataset gathers most of the literature records (128 localities in 29 countries from 56 references) of Phytoseiulus persimilis Athias-Henriot (Acari: Phytoseiidae) for which locality data were available for geo-referencing. The dataset was used for the distribution modelling of the predator-prey system Phytoseiulus persimilis Athias-Henriot (Acari: Phytoseiidae) and Tetranychus urticae (Koch) (Acari: Tetranychidae) which represents the most studied and the most known system among the Acari.
DOI: 10.15468/ujcauf
title: First record of Alpheus platycheirus Boone, 1927 (Crustacea, Alpheidae) on the northwest coast of Venezuela

description: Alpheus platycheirus Boone, 1927 (Decapoda, Alpheidae) is a snapping shrimp widely distributed in the western Atlantic, from the Gulf of Mexico to eastern Brazil. This shrimp usually inhabits muddy marine bottoms; however, here we record for the first time A. platycheirus in association with Thalassia testudinum and Halodule wrightii meadows at an unusually shallow depth in northwest Venezuela. This record extends the known habitat and distribution of A. platycheirus in the Caribbean. Moreover, it represents an additional alpheid species for Venezuela, bringing the known total to 34 species.
DOI: 10.6084/m9.figshare.12502859
title: Additional file 7 of Actin-related protein Arp4 regulates euchromatic gene expression and development through H2A.Z deposition in blood-stage Plasmodium falciparum

description: Additional file 7: Table S2. FPKM values of RNA-seq analysis for PfArp4-Ty1-Ribo line with or without GlcN in culture for knockdown.
DOI: 10.15468/smkxqc
title: Abundance of Diadema antillarum (Echinodermata: Echinoidea) on the coast of Venezuela: 1975-2003

description: Diadema antillarum is a shallow-water sea-urchin from the tropical Atlantic whose populations almost disappeared in 1983-84 because of widespread mortalities which reached 87-100 %. In Venezuela, urchin population densities before the mortality event were comparable to those of other Caribbean regions; however, later abundancies remain unknown. The objectives of this study were to evaluate the recent densities of certain D. antillarum populations along the Venezuelan coasts and compare the densities at the Parque Nacional Mochima before and after the mortality.
DOI: 10.6084/m9.figshare.12502859.v1
title: Additional file 7 of Actin-related protein Arp4 regulates euchromatic gene expression and development through H2A.Z deposition in blood-stage Plasmodium falciparum

description: Additional file 7: Table S2. FPKM values of RNA-seq analysis for PfArp4-Ty1-Ribo line with or without GlcN in culture for knockdown.
DOI: 10.6084/m9.figshare.20367181
title: Additional file 4 of Novel mutations of the USH2A gene cause Usher syndrome in five Chinese families

description: Additional file 4.
DOI: 10.6084/m9.figshare.20367181.v1
title: Additional file 4 of Novel mutations of the USH2A gene cause Usher syndrome in five Chinese families

description: Additional file 4.
DOI: 10.6084/m9.figshare.20367184
title: Additional file 5 of Novel mutations of the USH2A gene cause Usher syndrome in five Chinese families

description: Additional file 5.
DOI: 10.6084/m9.figshare.20367184.v1
title: Additional file 5 of Novel mutations of the USH2A gene cause Usher syndrome in five Chinese families

description: Additional file 5.
DOI: 10.6084/m9.figshare.20367187
title: Additional file 6 of Novel mutations of the USH2A gene cause Usher syndrome in five Chinese families

description: Additional file 6.
DOI: 10.6084/m9.figshare.20367187.v1
title: Additional file 6 of Novel mutations of the USH2A gene cause Usher syndrome in five Chinese families

description: Additional file 6.
DOI: 10.5517/ccdc.csd.cc2h3ly5
title: CCDC 2297377: Experimental Crystal Structure Determination

description: Related Article: Lambert Sicard, Clément Brouillac, Nicolas Leclerc, Sadiara Fall, Nicolas Zimmerman, Olivier Jeannin, Joëlle Rault-Berthelot, Cassandre Quinton, Cyril Poriel|2023|Mater. Chem. Front.|8|1349|doi:10.1039/D3QM01106B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/s4xu5b
title: Nouveau pont du Larivot sur la rivière de Cayenne et ses raccordements à la RN1 bidirectionnelle - Biotope_REPTILE_INV

description: Inventaires des reptiles réalisés par Biotope
DOI: 10.6084/m9.figshare.24037220
title: Additional file 5 of Single-cell resolution analysis reveals the preparation for reprogramming the fate of stem cell niche in cotton lateral meristem

description: Additional file 5: Table S4. Differentiated genes expressed in epidermis, cortex, primary xylem, parenchyma cell, cambium, xylem vessel and phloem of Jin668 and TM-1 at different time points.
DOI: 10.6084/m9.figshare.24037220.v1
title: Additional file 5 of Single-cell resolution analysis reveals the preparation for reprogramming the fate of stem cell niche in cotton lateral meristem

description: Additional file 5: Table S4. Differentiated genes expressed in epidermis, cortex, primary xylem, parenchyma cell, cambium, xylem vessel and phloem of Jin668 and TM-1 at different time points.
DOI: 10.6084/m9.figshare.25287325
title: Multicellular ecotypes shape progression of lung adenocarcinoma from ground-glass opacity towards advanced stages

description: Single-cell RNA sequencing and read processing The cell suspension was loaded into Chromium microfluidic chips with 3’(v3) chemistry and barcoded with a 10× Chromium Controller (10X Genomics). RNA from the barcoded cells was subsequently reverse-transcribed and sequencing libraries constructed with reagents from a Chromium Single Cell 3’ v3 reagent kit (10X Genomics) according to the manufacturer’s instructions. Sequencing was performed with Illumina Novaseq 6000, according to the manufacturer’s instructions (Illumina). The 10X Genomics CellRanger software pipeline (v 5.0.1) was used to demultiplex cell barcodes and reads were mapped to the hg38 human genome using STAR aligner (v2.7.10a)(Dobin et al., 2013).Filtering, normalization, integration and clustering of scRNA-seq data Seurat (v3.1.0) was used for filtering, selecting variable gene, dataset integration, dimensionality reduction, clustering, cell type annotation, differential expression, and visualization. We applied quality measures on raw gene-cell-barcode matrix for each cell: mitochondrial genes (≤20%, unique molecular identifiers (UMIs), and gene count (ranging from 200 to 6000). We excluded genes with min.cells &lt; 3 and removed mitochondrial as well as ribosomal genes in the subsequent analysis. For the remaining cells and genes, we defined relative expression by centering the gene count through using the ‘ScaleData’ function. In the integration step, function ‘SelectIntegrationFeatures’ was used to select features, which were used to scaled (function ' ScaleData’) and compute the principal component (PCs, function ‘RunPCA’). When identifying integration anchors, one sample from each clinical stage was randomly selected as reference (function ‘FindIntegrationAnchors’, reduction = "rpca"), Then all scRNAseq datasets were integrated using above anchor (function ‘IntegrateData’). Cell clustering, tSNE visualization and UMAP visualization were performed using the FindClusters, RunTSNE and RunUMAP functions, respectively. The annotations of cell identity on each cluster were defined by the expression of known marker genes, including: EPCAM, KRT19, KRT18, CDH1 for epithelial cells; CD3D, CD3E, CD3G for T cells; TRAC, LYZ, MARCO, CD68, FCGR3A for myeloid cells; CD79A for B cells; DCN, THY1, COL1A1, COL1A2 for fibroblasts, PECAM1, FLT1 for endothelial cells; KIT, MS4A2, GATA2 for MAST cells; NKG7, NCAM1, KLRD1 for NK cells.
DOI: 10.6084/m9.figshare.24037237
title: Additional file 1 of Comprehensive analysis on subchondral bone marrow lesions of human osteoarthritis by integrating bulk and single-cell transcriptomes

description: Additional file 1: Supplementary Table S1. Detailed information of nine samples from six donors in present study. Supplementary Table S2. Overlapping differentially expressed genes between two differentially expressed genes list  with similar direction of effect. Supplementary Table S3. GO analysis on differentially expressed genes (n=86 genes) in OA subchondral bone marrow lesion (top 10 dispalyed). Supplementary Table S4. KEGG analysis on differentially expressed genes (n=86 genes) in OA subchondral bone marrow lesion (top 7). Supplementary Table S5. Overlapping differentially expressed genes between four differentially expressed genes  with same expression trend. Supplementary Table S6. Summary of OA risk genes reported in genome-wide association studies. Supplementary Table S7. IL11-TF network prediction. Supplementary Table S8. VCAN-TF network prediction. Supplementary Table S9. Predicted miRNAs binding to IL11 through databases and publisheddatasets  (top 20 displayed). Supplementary Table S10. Predicted miRNAs binding to VCAN through databases and published datasets  (top 20 displayed). Supplementary Table S11. Top 20 predicated lncRNA binding to hsa-miR-424-5p , hsa-miR-670-5p and has-mir-4261 through databases. Supplementary Table S12. The estimated cell proportions of present bulk RNA-seq by MuSiC. Supplementary Table S13. Customized signature matrix of scRNA-seq for MCP counter. Supplementary Table S14. Cellular abundance of present bulk RNA-seq predicted by MCP counter. Supplementary Table S15.Cellular abundance of independent subchondral bone RNA microarray profile(E-MTAB-5564) predicted by MCP counter.
DOI: 10.6084/m9.figshare.24037237.v1
title: Additional file 1 of Comprehensive analysis on subchondral bone marrow lesions of human osteoarthritis by integrating bulk and single-cell transcriptomes

description: Additional file 1: Supplementary Table S1. Detailed information of nine samples from six donors in present study. Supplementary Table S2. Overlapping differentially expressed genes between two differentially expressed genes list  with similar direction of effect. Supplementary Table S3. GO analysis on differentially expressed genes (n=86 genes) in OA subchondral bone marrow lesion (top 10 dispalyed). Supplementary Table S4. KEGG analysis on differentially expressed genes (n=86 genes) in OA subchondral bone marrow lesion (top 7). Supplementary Table S5. Overlapping differentially expressed genes between four differentially expressed genes  with same expression trend. Supplementary Table S6. Summary of OA risk genes reported in genome-wide association studies. Supplementary Table S7. IL11-TF network prediction. Supplementary Table S8. VCAN-TF network prediction. Supplementary Table S9. Predicted miRNAs binding to IL11 through databases and publisheddatasets  (top 20 displayed). Supplementary Table S10. Predicted miRNAs binding to VCAN through databases and published datasets  (top 20 displayed). Supplementary Table S11. Top 20 predicated lncRNA binding to hsa-miR-424-5p , hsa-miR-670-5p and has-mir-4261 through databases. Supplementary Table S12. The estimated cell proportions of present bulk RNA-seq by MuSiC. Supplementary Table S13. Customized signature matrix of scRNA-seq for MCP counter. Supplementary Table S14. Cellular abundance of present bulk RNA-seq predicted by MCP counter. Supplementary Table S15.Cellular abundance of independent subchondral bone RNA microarray profile(E-MTAB-5564) predicted by MCP counter.
DOI: 10.15468/26hxhk
title: Suivi de la reproduction des tortues vertes à La Reunion - Traces de pontes de tortues (Kélonia – CEDTM, export juillet 2020)

description: Export des données de traces de pontes de tortues marines saisies dans la base de données Kélonia/CEDTM entre avril 2018 et juillet 2020. Ce jeu de données a été acquis dans le cadre du programme de suivi de la reproduction des tortues vertes à La Réunion initié depuis le 01/06/2004 par le CEDTM et poursuivi en collaboration avec Kelonia depuis 2013. Les données antérieures son issues d’une recherche bibliographique et d’enquêtes locales. Le jeu de données comporte un mélange de données opportunistes et de données standardisées acquises dans le cadre du programme de suivi selon le protocole de collecte associé. Il décrit la présence de traces laissées par les tortues lors de leur montée sur la plage pour aller y pondre leurs œufs, et différencie celles ayant abouti à une ponte de celles n’ayant pas abouti à une ponte.
DOI: 10.15468/jdjvjn
title: West Australian Marine Science Institute (WAMSI) 2 KMRP 1.1.2 Key Ecological Processes - Herbivory

description: Focus of the herbivory study was on one type of habitat (seagrass meadows), and the diet of two species of herbivores (golden-lined rabbitfish and green turtle). Four surveys were conducted between October 2014 and April 2016. At these locations the following measurements or collections were made (not all measurements were made during each survey): (1) Rates of herbivory (three surveys). These data are presented in the report for WAMSI KMRP 2.2.4, here the focus is on assessing rates of herbivory as a proportion of primary production; (2) Collections of golden-lined rabbitfish (Siganus lineatus); and (3) Blood samples from green turtles (Chelonia mydas). Data sourced from CSIRO Data Access Portal https://doi.org/10.4225/08/5a0be83e21ca2 on 2020-07-22.
DOI: 10.6084/m9.figshare.12502943
title: Additional file 2 of Microbial and metabolomic profiles in correlation with depression and anxiety co-morbidities in diarrhoea-predominant IBS patients

description: Additional file 2.
DOI: 10.6084/m9.figshare.12502943.v1
title: Additional file 2 of Microbial and metabolomic profiles in correlation with depression and anxiety co-morbidities in diarrhoea-predominant IBS patients

description: Additional file 2.
DOI: 10.6084/m9.figshare.12502949
title: Additional file 3 of Microbial and metabolomic profiles in correlation with depression and anxiety co-morbidities in diarrhoea-predominant IBS patients

description: Additional file 3.
DOI: 10.6084/m9.figshare.12502949.v1
title: Additional file 3 of Microbial and metabolomic profiles in correlation with depression and anxiety co-morbidities in diarrhoea-predominant IBS patients

description: Additional file 3.
DOI: 10.15468/h6as66
title: ONF - Données issues d'études conventionnelles commandées par organismes exterieurs à l'ONF - MOA : Communauté de Communes des Pyrénées Audoises-ONF - DFF Import Etudes LNEF_134_Rhysodes_Natura_2000 - MOA : Communauté de Communes des Pyrénées Audoises

description: Données DFF issues de la bdd du Labo. Nation. d'Entomologie Forestière (LNEF) pour la Communauté de Communes des Pyrénées Audoises - Données transmises à l'ONF dans le cadre d'études commandées par MOA exterieures à l'ONF
DOI: 10.15468/tfer54
title: Projet d'implantation d'un parc éolien sur la commune de Thurageau (Parc éolien du Mirebalais) - Données-brutes-de-biodiversité chiroptères_Thurageau

description: Il s'agit des données brutes de biodiversité qui concernent les chiroptères pour le projet de parc éolien de Thurageau.
DOI: 10.6084/m9.figshare.20367289
title: Additional file 3 of Unveiling of brain transcriptome of masked palm civet (Paguma larvata) with chronic infection of Toxoplasma gondii

description: Additional file 3: Table S3. Masked civet and BALB/c mice co-expressed differential genes
DOI: 10.6084/m9.figshare.20367289.v1
title: Additional file 3 of Unveiling of brain transcriptome of masked palm civet (Paguma larvata) with chronic infection of Toxoplasma gondii

description: Additional file 3: Table S3. Masked civet and BALB/c mice co-expressed differential genes
DOI: 10.15468/9d5p43
title: Parc éolien de la Plaine de la Minée - Chauves-souris - Ecoute en hauteur

description: Liste des chiroptères contactés en hauteur (microphonse à 30 et 70 m) dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude immédiate du projet éolien de la Plaine de la Minée commune de Chantonnay (85)
DOI: 10.15468/mbmskh
title: RNF | Ichtyofaune Prés salés, socle commun (Espaces protégés de la LPO France et de l'OFB) - RNF Prés salés - Biométrie de l'ichtyofaune relâchée | RNN Moëze-Oléron

description: Données de comptage du protocole RNF Surveillance des fonctions écologiques des prés salés pour l’ichtyofaune - volet commun, sur la Réserve Naturelle nationale de Moëze-Oléron.
DOI: 10.15468/txtgy7
title: Parc éolien Saint Secondin, lieu dit les Brandes - Parc éolien terrestre de Saint-Secondin - Mortalité - 2017

description: Données issu du suivi de la mortalité de l'Avifaune et des Chiroptères sur le parc éolien - Parc éolien de Saint-Secondin - 2017
DOI: 10.6084/m9.figshare.24777084.v4
title: Data Descriptor: EEG and physiological signals data from university students during interaction with the Neurohumanities Lab's partially immersive space.

description: This collection includes the data recordings from EEG signal of subjects interacting with the Neurohumanities Lab partial-inmersive space at Monterrey, MX, during October 2023 from "Neurohumanties Lab" project.
DOI: 10.6084/m9.figshare.11978700
title: Additional file 4 of Cigarette smoke and electronic cigarettes differentially activate bronchial epithelial cells

description: Additional file 4: Deregulated gened - pairwise comparison raw data.
DOI: 10.6084/m9.figshare.11978700.v1
title: Additional file 4 of Cigarette smoke and electronic cigarettes differentially activate bronchial epithelial cells

description: Additional file 4: Deregulated gened - pairwise comparison raw data.
DOI: 10.15468/5qsq6t
title: Suivi Oedipode des salines sur les espaces protégés de la LPO France et de l'OFB - Suivi Oedipodes des salines | RNN Lilleau-des-Niges

description: Données du Suivi Oedipode des salines sur la Réserve Naturelle nationale de Lilleau-des-Niges.
DOI: 10.15468/srjev5
title: Parc Solaire MONSEGUR 1 et 2 - M1-2 Oiseaux PE

description: point d'écoute oiseaux / Parcs photovoltaïques Monségur 1 et Monségur 2 Suivis faune-flore des mesures de compensation
DOI: 10.17632/9tjcy8rg4t.1
title: Direct interrogation of context-dependent GPCR activity with a universal biosensor platform. Janicot, Maziarz et al.

description: These files include all raw, non-edited Western Blot images included in the Janicot, Maziarz et al.
DOI: 10.6084/m9.figshare.24037396
title: Additional file 2 of DARS2 overexpression is associated with PET/CT metabolic parameters and affects glycolytic activity in lung adenocarcinoma

description: Additional file 2: Table S2. The sequences of primers used this study.
DOI: 10.6084/m9.figshare.24037396.v1
title: Additional file 2 of DARS2 overexpression is associated with PET/CT metabolic parameters and affects glycolytic activity in lung adenocarcinoma

description: Additional file 2: Table S2. The sequences of primers used this study.
DOI: 10.6084/m9.figshare.11978826
title: Additional file 10 of CircMRPS35 suppresses gastric cancer progression via recruiting KAT7 to govern histone modification

description: Additional file 10: PDB file 2. Z-DOCK of prediction of the trimer complex structure of circMRPS35 fragment, H4K5ac and KAT7
DOI: 10.6084/m9.figshare.11978826.v1
title: Additional file 10 of CircMRPS35 suppresses gastric cancer progression via recruiting KAT7 to govern histone modification

description: Additional file 10: PDB file 2. Z-DOCK of prediction of the trimer complex structure of circMRPS35 fragment, H4K5ac and KAT7
DOI: 10.6084/m9.figshare.6735965
title: Additional file 10: of Transcriptomics comparison reveals the diversity of ethylene and methyl-jasmonate in roles of TIA metabolism in Catharanthus roseus

description: Table S8. The FPKM value of 339 Candidate ABC Transporter Genes. (XLS 432Â kb). (XLS 432 kb)
DOI: 10.6084/m9.figshare.11978847
title: Additional file 4 of CircMRPS35 suppresses gastric cancer progression via recruiting KAT7 to govern histone modification

description: Additional file 4: Table S4. The novel circRNAs identified in this study
DOI: 10.6084/m9.figshare.11978847.v1
title: Additional file 4 of CircMRPS35 suppresses gastric cancer progression via recruiting KAT7 to govern histone modification

description: Additional file 4: Table S4. The novel circRNAs identified in this study
DOI: 10.6084/m9.figshare.6735971
title: Additional file 11: of Transcriptomics comparison reveals the diversity of ethylene and methyl-jasmonate in roles of TIA metabolism in Catharanthus roseus

description: Table S9. Assembled transcriptome file. (FASTA 100,416Â MB). (FSA 100415 kb)
DOI: 10.6084/m9.figshare.6735971.v1
title: Additional file 11: of Transcriptomics comparison reveals the diversity of ethylene and methyl-jasmonate in roles of TIA metabolism in Catharanthus roseus

description: Table S9. Assembled transcriptome file. (FASTA 100,416Â MB). (FSA 100415 kb)