cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/tc74d4vk6k.1
title: Evidence of Langmuir mixing effects in the upper ocean layer during tropical cyclones using observations and a coupled wave-ocean model

description: These data are for the publication:
"Zhou, Xiaohui, et al. "Impacts of surface waves on upper ocean responses under tropical cyclones (in prep)." 

There are 3 folders:
(1) Simulations: all simulations at EM-APEX floats and Lagrangian Floats under 5 TCs
(2) observation from EM-APEX floats:  The temperature, salinity, and wind-driven current at EM-APEX float under 5 TCs, which is from Dr. Je-Yuan Hsu at National Taiwan University and Dr. Eric D'Asaro at the University of Washington.
(3) observation from Lagrangian floats: The bulk VVV at Lagrangian floats under 5 TCs, which is from Dr. Eric D'Asaro at the University of Washington.
(4) all U10 forcing for 5 TCs, which is too larged to be stored here, can be accessible by requesting
(5) initial Temperature  and Salinity profiles for each float for Fig 3
DOI: 10.3334/cdiac/spruce.012
title: SPRUCE S1 Bog and SPRUCE Experiment Aerial Photographs

description: This data set provides a record of the aerial photographs taken of the S1-Bog on the Marcell Experimental Forest and the SPRUCE experimental site within the S1-Bog. New 2019-2020 photos collected from UAV have been added.
DOI: 10.5281/zenodo.3745900
title: Fine-Grained Activities of Daily Living Data with Structural Vibration and Electrical Load Sensing

description: Fine-grained non-intrusive monitoring of activities of daily living (ADL) enables various smart building applications, including ADL pattern assessments for older adults at risk for loss of safety or independence. We utilize structural vibration sensing and electrical load sensing to acquire multiple fine-grained kitchen activities under a lab structure setting. Each file contains the following values:<br> -RawData: time series of data for each channel (vibration on the table, vibration on the floor, load)<br> -Label: manually fine-grained labels of events<br> -Table: detected events start/stop index for vibration sensor on the table<br> -Floor: detected events start/stop index for vibration sensor on the floor<br> -Load: detected events start/stop index for load sensor<br> <br> Label notation:<br> 1 -- operating the kettle<br> 2 -- kettle on<br> 3 -- operating the microwave<br> 4 -- microwave on<br> 5 -- put things on the stove<br> 6 -- operating with stove<br> 7 -- stove on<br> 8 -- operating vacuum<br> 9 -- sweep floor<br> 10 -- walking/step<br> 11 -- miscellaneous<br> 12 -- synchronization signal (knock on the floor)<br> 13 -- vacant<br> 14 -- microwave door open
description: This research was supported in part by Highmark, the NationalScience Foundation (under grants CMMI-1653550), Intel and Google. The views and conclusions contained here are those of the authors and should not be interpreted as necessarily representing the official policies or endorsements, either express or implied, of CMU, UCM, Stanford, UPitts, NSF, or the U.S. Government or any of its agencies
description: {"references": ["Pan, Shijia, Mario Berges, Juleen Rodakowski, Pei Zhang, and Hae Young Noh. \"Fine-grained recognition of activities of daily living through structural vibration and electrical sensing.\" In Proceedings of the 6th ACM International Conference on Systems for Energy-Efficient Buildings, Cities, and Transportation, pp. 149-158. 2019.", "Pan, Shijia, Mario Berges, Juleen Rodakowski, Pei Zhang, and Hae Young Noh. \"Fine-grained Activity of Daily Living (ADL) Recognition through Heterogeneous Sensing Systems with Complementary Spatiotemporal Characteristics.\" Frontiers in Built Environment 6 (2020): 167."]}
DOI: 10.5281/zenodo.3969360
title: Data for the publication "Future warming exacerbated by aged soot effect on cloud formation"

description: This repository contains the data for the paper: "Ulrike Lohmann, Franz Friebel, Zamin A. Kanji, Fabian Mahrt, Amewu A. Mensah and David Neubauer: Future warming exacerbated by aged soot effect on cloud formation. <em>Nat. Geosci.</em> <strong>13, </strong>674–680 (2020). https://doi.org/10.1038/s41561-020-0631-0" Each tar-file contains the data (or instructions how to obtain the data) to reproduce a figure or table in our paper. Note that the scripts to plot this data are to be found in the accompanying package (http://dx.doi.org/10.5281/zenodo.3457878) Also note that Extended Data Fig. 1 is identical to Supplementary Fig. S4 as well as that Extended Data Table 1 is identical to Supplementary Table S2.
DOI: 10.5281/zenodo.7106442
title: Replication Data for: ``Impact of Parameterized Isopycnal Diffusivity on Shelf-Ocean Exchanges under Upwelling-Favorable Winds: Offline Tracer Simulations Augmented by Artificial Neural Network''

description: This dataset contains the modified MAMEBUS source code, configuration files for the MITgcm and MAMEBUS simulations, model diagnostics used in the paper, and scripts to train the Artificial Neural Networks.
DOI: 10.5281/zenodo.7713109
title: Mid-infrared optical constants of silicate glasses supporting planetary surface science and spectroscopy studies.

description: The dataset supports the manuscript on "Wavelength dependent Mid-infrared Optical Constants (5-25 µm) of silicate glasses: A Genetic Algorithm approach" submitted by the authors to Earth and Space Science. data.xlsx - contains the measured micro-FTIR spectra, the modeled reflectance spectra by the GA-LSQ approach, the residual between the measured and modeled spectra, the wavelength dependent optical constants n and k for all the glasses studied. This work was supported by NASA PDART grant 80NSSC21K0877 to E. C. Sklute and the RISE2 SSERVI cooperative agreement 80NSSC19M0215.
DOI: 10.5281/zenodo.7946420
title: Supplementary materials for "Machine Learning Electronic Structure Methods Based On The One-Electron Reduced Density Matrix"

description: <strong>Supplementary materials for "Machine Learning Electronic Structure Methods Based On The One-Electron Reduced Density Matrix"</strong> by X. Shao, L. Paetow, M. E. Tuckerman and M. Pavanello <strong>The QMLearn software</strong> A current snapshot of the QMLearn software is available on GitLab at https://gitlab.com/pavanello-research-group/qmlearn. Video tutorials and other examples (including Jupyter Notebooks) are available at http://qmlearn.rutgers.edu <strong>Data availability</strong> We share all training/test sets and notebooks needed to reproduce Table II and Figures 1-7. For all figures, we provide Jupyter notebooks and the needed data to exactly reproduce the figures. Trajectory files for all IR spectra are shared. The collection of all materials is available in this dataset. The QMLearn version used for this work is 0.0.1. Specific QMLearn dependencies and their version used for all calculations are listed as follows:<br> - ase (3.22.1)<br> - h5py (3.7.0)<br> - numpy (1.23.1)<br> - pyscf (2.0.1)<br> - scikit-learn (1.1.1)<br> - scipy (1.8.1)
DOI: 10.5676/dwd_gpcc/mp_m_v2020_100
title: GPCC Monitoring Product Version 2020 at 1.0°: Near Real-Time Monthly Land-Surface Precipitation from Rain-Gauges based on SYNOP and CLIMAT Data
title: Gridded Monthly Totals

description: This is the GPCC Monitoring Product of monthly global land-surface precipitation based on the station database (SYNOP, CLIMAT) available via the Global Telecommunication System (GTS) of the World Meteorological Organization (WMO) at the time of analysis (2 months after end of an analysis month). This product contains the monthly totals on a regular latitude/longitude grid with a spatial resolution of 1.0° x 1.0° latitude by longitude. Interpolation is made on the anomalies from the GPCC Climatology V2020 in the corresponding resolution (DOI: 10.5676/DWD_GPCC/CLIM_M_V2020_100). The temporal coverage of the dataset ranges from January 1982 until the month for which GTS data (SYNOP and CLIMAT) is available, i.e. 2 months after end of the analysis month due. The GPCC Monitoring Product is the in situ component to the satellite-gauge combined precipitation analyses of the Global Precipitation Climatology Product (GPCP) and the CPC Merged Analysis of Precipitation (CMAP). Moreover it supports regional climate monitoring and serves the land-surface complement to the Hamburg Ocean-Atmosphere Parameters and Fluxes from Satellite (HOAPS) data set. This GPCC product is recommended to be used for applications requesting high quality gridded monthly precipitation analyses in near real-time. GPCC Monitoring Product (GPCC_MP) users should carefully take into account the number of stations available for a specific analysis grid in a specific month.
description: General user recommendations: Users are referred to following gridded Global Precipitation Climate Centre (GPCC) products: GPCC Climatology 1951-2000 (GPCC_CLIM) with high representativeness, for application as a reference, and for utilization of the anomaly interpolation method. GPCC Full Data Monthly Product(GPCC_FD) with high accuracy, for, e.g., verification of models, or for analysis of historic global precipitation, or for research concerning the global water cycle, e.g.. GPCC Monitoring Product (GPCC_MP) with high availability and reasonable timeliness, for applications like calibration of satellite data, or early annual reporting. GPCC First Guess Product (GPCC_FG) with high timeliness, to be applied for, e.g., drought monitoring.
DOI: 10.6084/m9.figshare.21610341.v1
title: Antioxidant of the Putat Air (Barringtonia racemosa) as a Herbal to Improve Sperm Quality due to Cigarette Smoke in rats

description: The objective of this study is to analyse the antioxidant in putat air (barringtonia racemosa) as an herbal to improve sperm quality due to cigarette smoke.
DOI: 10.6084/m9.figshare.23523261
title: Supplementary Material for: The Role of Abdominal Surgery in Refractory Immune Checkpoint Inhibitor Enterocolitis: A Case Report

description: This article describes the case of a 73-year-old patient with grade 3 immune checkpoint inhibitor (ICI)-induced enteritis. Five different immunosuppressive agents (glucocorticoids, high-dose infliximab, methotrexate, mycophenolate mofetil, and vedolizumab) were administered, however, with no clinical or radiographical benefit. A laparotomy was performed, as the patient showed signs of intestinal obstruction, with a segmental resection of the ileal loop. Biopsy results showed multiple fibrotic strictures. The current treatment guidelines for ICI enterocolitis only include drugs as a treatment option. Nevertheless, it remains important to consider early surgical intervention in order to avoid serious complications due to persistent and pronounced inflammation. The current case highlights the importance of surgery as a treatment modality in the multidisciplinary approach for ICI-induced enteritis, which should be taken into consideration after second- or third-line treatment.
DOI: 10.6084/m9.figshare.23565945
title: Supplementary Material for: The Relationship Between Metabolic Comorbidities and Post-surgical Weight Loss Outcomes in Adolescents Undergoing Laparoscopic Sleeve Gastrectomy

description: Background: Little is known about the relationship between metabolic factors and weight loss success in adolescents undergoing bariatric surgery. Methods: The objective of this study was to assess if baseline metabolic characteristics associate with weight loss in adolescents undergoing laparoscopic sleeve gastrectomy. A retrospective study was conducted in a comprehensive adolescent bariatric surgery center of 151 subjects (34 male, 117 female). Anthropometric measurements and metabolic factors including blood pressure, fasting glucose, HbA1c, Metabolic Syndrome (MeS), liver function, triglycerides, and waist circumference were collected at one pre-surgical visit, and at 6 and/or 12 months post-laparoscopic sleeve gastrectomy. Weight loss was compared between subjects with normal or abnormal baseline metabolic factors. Absolute BMI change was used to measure successful weight loss. Results: Higher baseline systolic blood pressure (SBP) was associated with greater weight loss as measured by body mass index (BMI) change and BMI standard deviation score (BMI-SDS) change at 6 and 12 months. Those patients in the 6-month follow up group with an abnormal hemoglobin A1C (HbA1c) at baseline had significantly more weight loss as measured by BMI-SDS. None of the other parameters, including fasting glucose, Metabolic Syndrome (MeS), liver function, triglycerides and waist circumference showed a predictive relationship. Discussion/Conclusion: Elevated SBP and HbA1c in adolescents with morbid obesity may reflect a population more likely to achieve successful weight loss, and thus, may be a good target for bariatric surgery, specifically laparoscopic sleeve gastrectomy, as an intervention for severe obesity. An assessment of behavioral differences in patients with and without elevated BP and HbA1c might explain the mechanism for the improved weight loss.
DOI: 10.6084/m9.figshare.23606772
title: Supplementary Material for: Head and Neck Solitary Fibrous Tumor Presenting as Salivary Gland Tumor: Two Case Reports and Review of the Literature

description: Solitary fibrous tumors (SFTs) are soft tumors (mesenchymal origin) that most likely develop from adult mesenchymal stem cells. SFTs are not common in the head and neck region, and the characteristics of tumors in this location are unclear. The present study describes the clinicopathological findings of 2 cases of SFTs arising in the parotid gland and buccal space, presenting as salivary gland tumors. The first case is a 76-year-old man presenting with a painless tumor on the right parotid gland who subsequently underwent partial superficial parotidectomy. According to the results of histopathological analysis, the tumor consisted of stellate and spindle-shaped cells proliferating on a mucous-like substrate. Immunohistochemical staining revealed that neoplastic cells were positive for CD34, vimentin, Bcl2, and STAT6. The second case is of a 64-year-old man presenting with a painless lump on his right cheek. Based on the findings of fine needle aspiration cytology, a tumor derived from myoepithelial cells of the minor salivary gland or a nonepithelial tumor was suspected. The patient underwent surgical resection via an intraoral approach. Histopathologically, the tumor consisted of spindle-shaped cells with rod-shaped or irregular nuclei. Immunohistochemical staining revealed that the neoplastic cells were positive for CD34, CD99, Bcl2, and STAT6. Briefly, SFT should be considered in the differential diagnosis of a well-marginalized lesion in the salivary gland and oral cavity. STAT6 immunohistochemistry is the most specific and sensitive method of diagnosing SFT. A thorough understanding of the morphological changes associated with SFT and their correlation with clinical, immunohistochemical, and molecular characteristics is important to avoid misdiagnosis.
DOI: 10.6084/m9.figshare.23744769
title: Supplementary Material for: Discovery and potential functional characterization of long noncoding RNAs associated with familial acne inversa with NCSTN mutation

description: Abstract Background Long noncoding RNAs (lncRNAs) are associated with many dermatologic diseases. However, little is known about the regulatory function of lncRNAs in familial acne inversa (AI) patients with nicastrin (NCSTN) mutation. Objectives To explore the regulatory function of lncRNAs in familial AI patients with NCSTN mutation. Methods The expression profiles of lncRNAs and mRNAs in skin tissues from familial AI patients with NCSTN mutation and healthy individuals were analysed in this study via RNA sequencing (RNA-seq). Results In total, 359 lncRNAs and 1863 mRNAs were differentially expressed between the two groups. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses revealed that the dysregulated mRNAs targeted by lncRNAs were mainly associated with the immune regulation, Staphylococcus aureus infection and B cell receptor signalling pathways. The lncRNA-miRNA-mRNA coexpression network contained 265 network pairs comprising 55 dysregulated lncRNAs, 11 miRNAs and 74 mRNAs. Conservation analysis of the differentially expressed lncRNAs between familial AI patients with NCSTN mutation and Ncstn keratinocyte-specific knockout (NcstnΔKC) mice identified 6 lncRNAs with sequence conservation; these lncRNAs may participate in apoptosis, proliferation and skin barrier function. Conclusions These findings provide a direction for exploring the regulatory mechanisms underlying the progression of familial AI patients with NCSTN mutation.
DOI: 10.6084/m9.figshare.23807175
title: Supplementary Material for: Dietary Flavonoid Intake and Carotid Calcification in Patients with Ischemic Stroke

description: Introduction: Owing to the antioxidant and anti-inflammatory effects, flavonoids can influence the initiation and development of atherosclerosis, but the underlying mechanisms remain largely undetermined. This study aimed to evaluate the associations between dietary flavonoids and carotid calcification in patients with ischemic stroke. Methods: This study screened consecutive patients with ischemic stroke via Nanjing Stroke Registry Program during February 2016 and April 2021. A semi-quantitative food frequency questionnaire was used to evaluate dietary consumption of flavonoids and other nutritional components. Presence and degree of carotid calcification were determined according to Agatston scores on computer tomography angiography. Logistic regression was performed to evaluate the association between dietary flavonoids (total flavonoids, flavonols, flavones, flavanones, flavan-3-ols, anthocyanins, and isoflavones) and carotid calcification. Results: Of the 601 enrolled patients, 368 (61.2%) were detected with carotid calcification. Patients with high intake of total flavonoids (the fifth quintile) had a 52% lower carotid calcification risk than those with low intake (the first quintile; OR =0.48; 95% CI, 0.26 -0.90; P =0.007 for trends) after adjusting for major confounders. Patients with high intake of flavan-3-ols (the fifth quintile) had a 51% lower carotid calcification risk than those with low intake (the first quintile; OR =0.49; 95% CI, 0.25 -0.97; P =0.016 for trends). Discussion/Conclusion: Dietary flavonoid intake is associated with carotid calcification, and, therefore, may influence the risk of stroke occurrence and recurrence.
DOI: 10.6084/m9.figshare.23936310
title: Supplementary Material for: Comparison of isolated lymphocyte and whole blood based CBMN assays for radiation triage.

description: Following a mass-casualty nuclear/radiological event, there will be an important need for rapid and accurate estimation of absorbed dose for biological triage. The cytokinesis-block micronucleus (CBMN) assay is an established and validated cytogenetic biomarker used to assess DNA damage in irradiated peripheral blood lymphocytes. Here, we describe an intercomparison experiment between two biodosimetry laboratories, located at Columbia University (CU) and Health Canada (HC) that performed different variants of the human blood CBMN assay to reconstruct dose in human blood, with CU performing the assay on isolated lymphocytes and using semi-automated scoring whereas HC used the more conventional whole blood assay. Although the micronucleus yields varied significantly between the two assays, the predicted doses closely matched up to 4 Gy – the range from which the HC calibration curve was previously established. These results highlight the importance of a robust calibration curve(s) across a wide age range that match the exposure scenario as closely as possible and that will account for differences in methodology between laboratories. We have seen that at low doses, variability in the results may be attributed to variation in the processing whilst at higher doses the variation is dominated by inter-individual variation in cell proliferation. This inter-laboratory collaboration further highlights the usefulness of the CBMN endpoint to accurately reconstruct absorbed dose in human blood after ionizing radiation exposure.
DOI: 10.6084/m9.figshare.23986332
title: Supplementary Material for: Systematic review and meta-analysis: Association between preoperative ustekinumab and surgical complications in Crohn's disease patients

description: Introduction: The impact of ustekinumab (UST) therapy on surgical complications in patients with Crohn's disease (CD) remains controversial. The aim of this meta-analysis is to explore the link between these two. Methods: Databases (PubMed, Web of Science, Cochrane, and Springer Link) were searched until April 2022. Studies of CD patients who received UST and no UST prior to surgery (including no biological therapy, anti-TNF-α agent, and VDZ) were included. Primary outcomes included overall complications, infectious complications, and non-infectious complications. Results: Nine studies totaling 3,225 CD patients were enrolled; 332 patients received UST treatment. There was no evidence of difference in the overall complications (OR=0.84, p=0.37, 95%CI=[0.57-1.23], I2=40%) between CD patients who had UST treatment preoperatively and those who had no UST treatment. There was no evidence of a difference in infectious complications (OR=1.15, p=0.35, 95%CI=[0.86-1.53], I2=2%). Additionally, there was no significant no evidence of difference between these group in terms of non-infectious complications and death. Specifically, there were no evidence of difference in overall complications, infection complications (including wound complications, sepsis, abscess and anastomotic leakage), and non-infection complications (ileus, readmission, and return to operation), compared with no biological therapy and anti-TNF-α agents. At the same time, no significant evidence of difference was discovered in the comparison of preoperative UST and VDZ therapy in terms of overall complications, infectious complications (sepsis and abscess), and non infectious complications (intestinal obstruction, readmission, and recovery surgery). Conclusion: In general, compared with other biological agents, preoperative use of UST in the treatment of CD patients is usually safe and does not increase surgical complications.
DOI: 10.6084/m9.figshare.24024369
title: Supplementary Material for: Pulmonary Enteric Adenocarcinoma: A very rare case report from Qatar

description: A 78-year-old male patient presented with dyspnoea, loss of appetite and weight loss. Workup and imaging showed suspected malignant lung lesion. Biopsy was done and showed features of pulmonary enteric adenocarcinoma (PEAC). This is a very rare disease, and its diagnosis is challenging.