cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20227419.v1
title: Analyzing cell type-specific dynamics of metabolism in kidney repair

description: To overcome the limitations of current metabolic analysis we present an advanced high spatial metabolomics approach using matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI). We show that this method can map cell type-specific dynamic changes in the central carbon metabolism, as well as the contribution of different nutrients to energy metabolism in a complex heterogenous tissue architecture such as the kidney. Combined with multiplexed immunofluorescence staining, we can detect metabolic changes and nutrient partitioning in targeted cell types as demonstrated in a bilateral renal ischemia/reperfusion injury (bIRI) model. Our method was designed to use different 13C-isotope-labeled nutrients that allowed tracing of spatio-temporal incorporation of the 13C-isotopes into the main intermediates of glycolysis and the TCA cycle. We applied a tissue culture system, in which 350 µm-thick vibratome slices of fresh mouse kidney. During incubation, parallel introduction of different 13C-isotope-labeled nutrients to the tissue culture medium at different time points. Negative ion-mode MALDI-MSI at subcellular resolution (i.e. pixel size of 5 × 5 µm2) was applied to detect metabolites and (phospho)lipids from the harvested tissues. The exported and processed datasets are provied here. Due to the large size of all raw data, some ROIs from measured samples are provied here to show information of 13c-labeled metabolites and the quality of spectrum. <br>
DOI: 10.6084/m9.figshare.25136978.v3
title: Estimates for diagnostic accuracy of rapid antigen tests for SARS-CoV-2 in systematic reviews are consistently similar and precise despite poor methodological rigor

description: <b>Objective:</b> To evaluate the design, conduct, and analysis of systematic reviews on the diagnostic accuracy of rapid antigen tests for SARS-CoV-2 during the COVID-19 pandemic.
DOI: 10.6084/m9.figshare.26196209.v4
title: Travel time to nearest hospitals

description: Ensuring equitable access to health services is crucial for public welfare and social equity, and is a key objective of the United Nations' Sustainable Development Goals (SDGs). However, existing datasets often define hospital accessibility using travel time to hospitals in geographic dimension only, without considering the supply (hospital capacity) and demand (population distribution) dynamics. To overcome this limitation, we developed and validated a national-scale 1 KM map of both hospital travel time and hospital accessibility in China. We used Gaussian two-step floating catchment area (Ga2SFCA) model to calculate hospital accessibility, incorporating hospital capacity and service population. Various file types and statistical indicators are provided, making the dataset highly accessible for non-specialists. The dataset fills the gap in publicly available nationwide hospital accessibility data for China and can serve as a critical tool in optimizing resource allocation and developing targeted strategies to improve healthcare equity.Travel time to nearest hospitals (minutes)<br>
DOI: 10.6084/m9.figshare.28816379.v1
title: Data set of study of Antimicrobial Susceptibility and Molecular Detection of Carbapenem Resistant Genes NDM-1 and IMP-1 of <i>Pseudomonas aeruginosa</i> Isolated from Clinical Specimens

description: This file contains the raw data collected on this study and used on interpretation and statistic analysis of this study
DOI: 10.6084/m9.figshare.13359383.v1
title: Supplementary Material for: Analysis of the Interaction between Polygenic Risk Score and Calorie Intake in Obesity in the Korean Population

description: <b><i>Introduction:</i></b> Obesity results from an imbalance in the intake and expenditure of calories that leads to lifestyle-related diseases. Although genome-wide association studies (GWAS) have revealed many obesity-related genetic factors, the interactions of these factors and calorie intake remain unknown. This study aimed to investigate interactions between calorie intake and the polygenic risk score (PRS) of BMI. <b><i>Methods:</i></b> Three cohorts, i.e., from the Korea Association REsource (KARE; <i>n</i> = 8,736), CArdioVAscular Disease Association Study (CAVAS; <i>n</i> = 9,334), and Health EXAminee (HEXA; <i>n</i> = 28,445), were used for this study. BMI-related genetic loci were selected from previous GWAS. Two scores, PRS, and association (a)PRS, were used; the former was determined from 193 single-nucleotide polymorphisms (SNPs) from 5 GWAS datasets, and the latter from 62 SNPs (potentially associated) from 3 Korean cohorts (meta-analysis, <i>p</i> &lt; 0.01). <b><i>Results:</i></b> PRS and aPRS were significantly associated with BMI in all 3 cohorts but did not exhibit a significant interaction with total calorie intake. Similar results were obtained for obesity. PRS and aPRS were significantly associated with obesity but did not show a significant interaction with total calorie intake. We further analyzed the interaction with protein, fat, and carbohydrate intake. The results were similar to those for total calorie intake, with PRS and aPRS found to not be associated with the interaction of any of the 3 nutrition components for either BMI or obesity. <b><i>Discussion:</i></b> The interaction of BMI PRS with calorie intake was investigated in 3 independent Korean cohorts (total <i>n</i> = 35,094) and no interactions were found between PRS and calorie intake for obesity.
DOI: 10.6084/m9.figshare.21718079.v2
title: Social Network Dataset - field network analysis (Esparza & Smith, 2023: Ecosphere)

description: Data used in the analyses for Esparza & Smith, 2023 published in Ecosphere in the Eco-Education track. The file entitled "social network dataset" contains information on which individuals in the field course social system sent and received ties (i.e., who interacted with whom). These data were collected using name generators, which typically include two types of questions that probe the names of those with whom an individual interacted (<i>i.e., name generators</i>) and information on those an individual interacted with (<i>i.e., name interpreters</i>). In this study, students completed a name generator survey at weeks six, eleven, and fifteen of the 15-week semester (i.e., timepoint) in a field course with an embedded course-based field research project. See Esparza and Smith (In review) Materials and Methods for more information.<br>The file entitled "social network metadata" includes detailed information on the data included in the "social network dataset" csv. file. This includes the ranges/categories and a description of each variable included in the dataset.<br>All data are anonymized so as to protect the identity and privacy of all research participants and their listed contacts. The research has been approved by the Cornell University Institutional Review Board under the exempt protocol #2001009364.
DOI: 10.6084/m9.figshare.22140305.v1
title: Modified Consort Checklist

description: Modified CONSORT checklist
DOI: 10.6084/m9.figshare.5124760.v1
title: Supplementary Material for: Relating Centromeric Topography in Fixed Human Chromosomes to α-Satellite DNA and CENP-B Distribution

description: Despite extensive analyses on the centromere and its associated proteins, detailed studies of centromeric DNA structure have provided limited information about its topography in condensed chromatin. We have developed a method with correlative fluorescence light microscopy and atomic force microscopy that investigates the physical and structural organization of α-satellite DNA sequences in the context of its associated protein, CENP-B, on human metaphase chromosome topography. Comparison of centromeric DNA and protein distribution patterns in fixed homologous chromosomes indicates that CENP-B and α-satellite DNA are distributed distinctly from one another and relative to observed centromeric ridge topography. Our approach facilitates correlated studies of multiple chromatin components comprising higher-order structures of human metaphase chromosomes.
DOI: 10.6084/m9.figshare.10248032.v2
title: D1_MSLlocalizations.xlsx: Curiosity (MSL) location over the first 3 Mars years of the mission.

description: Excel spreadsheet showing sol, Ls, lon, lat and elevation of Location (lon, lat, elevation) of Mars Science Laboratory (MSL) Curiosity Rover in Gale Crater over the first 3 Mars years of its mission.<br>These data are used to produce Figure 1 of, and in other analysis within, the paper “Convective vortex and dust devil predictions for Gale Crater over three Mars years and comparison with MSL-REMS observations” - JGR-Planets, 2019 - by C. E. Newman, H. Kahanpää, M. I. Richardson, G. M. Martinez, A. Vicente-Retortillo and M. Lemmon<br>
DOI: 10.6084/m9.figshare.11743203.v1
title: D-dimer shared.xlsx

description: Complete details of information collected from patients retrospectively analysed for our project.
DOI: 10.6084/m9.figshare.22146812.v1
title: Morphological and stable isotope dataset from Feeding morphology and body size shape resource partitioning in an eared seal community

description: Morphological and stable isotope dataset used in this study
DOI: 10.17632/g23n565xh3
title: Shandong Provincial Hospital Database, SPHDB

description: SPHDB: In order to test the practical application of the proposed method, a clinical data set (Shandong Provincial Hospital Database, SPHDB) was created in this paper .SPHDB contains 24-hour ambulatory ECG recordings from 250 patients, all from patients with paroxysmal AF. All patients were from a variety of regions, with a minimum age of 42 years and a maximum age of 90 years, a male to female ratio of approximately 1:1, and a mix of farmers, workers, students and public officials. All records were collected by a 12-lead Holter ambulatory ECG monitor with a sampling frequency of 200 HZ. each record was annotated by a clinical expert and the annotated data was divided into AF segments and non-AF segments. The protocol was approved by the Ethics Committee of Shandong Provincial Hospital.
DOI: 10.6084/m9.figshare.1250031.v1
title: Supplementary material to manuscript: Analyzing data citation practices to the Data Citation Index

description: Supplementary material to an analysis on data citation practices based on the Data Citation Index from Thomson Reuters. This database launched in 2012 aims to link data sets and data studies with citation received from the rest of their citation indexes. Funding bodies and research organizations are increasingly demanding the need of researchers to make their scientific data available in a reusable and reproducible manner, aiming to maximize the allocation of funding while providing transparency on the scientific process. The DCI harvests citations to research data from papers indexed in the Web of Knowledge. It relies on the information provided by the data repository as data citation practices are inconsistent or inexistent in many cases. The findings of this study show that data citation practices are far from common in most research fields.. Some differences have been reported on the way researchers cite data: while in the areas of Science and Engineering & Technology data sets were the most cited, in Social Sciences and Arts & Humanities data studies play a greater role. 88.1% of the records have received no citation, but some repositories show very low uncitedness rates. While data citation practices are rare in most fields, they have expanded in disciplines such as Crystallography or Genomics. We conclude by emphasizing the role the DCI may play to encourage consistent and standardized citation of research data which will allow considering its use on following the research process developed by researchers, from data collection to publication.
DOI: 10.6084/m9.figshare.19609998.v1
title: Self-Reported Side Effects of Different COVID-19 Vaccines Data

description: This is a cross-sectional survey data on side effects of COVID-19 vaccine from Bangladesh.
DOI: 10.6084/m9.figshare.19755469.v1
title: 2022 Presidential Elections Data

description: Precint level data on number of votes obtained by each candidate
DOI: 10.6084/m9.figshare.24624564.v1
title: Trash state classification.

description: The project explores the development of an AI model using computer vision for precise household waste classification, targeting plastics, cardboard, glass, cans, and paper. The literature review underscores the environmental concern in Costa Rica and examines AI techniques in solid waste management for enhanced efficiency and accuracy.The methodology employs a mixed approach, combining quantitative and applied elements. A carefully selected dataset and augmentation techniques are used to develop a robust AI model. Evaluation occurs in real household environments with active user participation. Results indicate good performance in classifying with positive user acceptance.
DOI: 10.6084/m9.figshare.1203646.v1
title: CRAWDAD wireless network data citation bibliography

description: This BibTeX file contains the corpus of papers that cite CRAWDAD wireless network datasets, as used in the paper: Tristan Henderson and David Kotz. Data citation practices in the CRAWDAD wireless network data archive. Proceedings of the Second Workshop on Linking and Contextualizing Publications and Datasets, London, UK, September 2014. Most of the fields are standard BibTeX fields. There are two that require further explanation. "citations" - this field contains the citations for a paper as counted<br>by Google Scholar as of 24 September 2014. "keywords" - this field contains a set of tags indicating data citation practice. These are as follows:<br>- "uses_crawdad_data" - this paper uses a CRAWDAD dataset<br>- "cites_insufficiently" - this paper does not meet our sufficiency criteria<br>- "cites_by_description" - this paper cites a dataset by description rather than dataset identifier<br>- "cites_canonical_paper" - this paper cites the original ("canonical") paper that collected a dataset, rather than pointing to the dataset<br>- "cites_by_name" - this paper cites a dataset by a colloquial name rather than dataset identifier<br>- "cites_crawdad_url" - this paper cites the main CRAWDAD URL rather than a particular dataset<br>- "cites_without_url" - this paper does not provide a URL for dataset access<br>- "cites_wrong_attribution" - this paper attributes a dataset to CRAWDAD, Dartmouth etc rather than the dataset authors<br>- "cites_vaguely" - this paper cites the used datasets (if any) too vaguely to be sufficient If you have any questions about the data, please contact us at<br>crawdad@crawdad.org
DOI: 10.6084/m9.figshare.12932963.v2
title: Data and codes

description: These codes are mainly used to realize the maximum coverage of target users and target environments. Mocked mobile internet usage data is also included.<br><br>
DOI: 10.6084/m9.figshare.26496214.v1
title: Dataset: The Impact of Library Visits on Undergraduate Student GPA: The Importance of the Library as a Place

description: This dataset contains information about the relationship between the frequency of library visits by undergraduate residential students and their academic performance, measured by GPA, during the Fall 2023 and Spring 2024 semesters at a private University in the United States of America. The data comprises anonymized library gate entry records and GPA scores, filtered to include students aged 17 and older.<b>Dataset Details:</b><b>Total Records:</b> 3,340<b>Semester Coverage:</b> Fall 2023 and Spring 2024<b>Student Demographics:</b> Undergraduate residential students aged 17 and older<b>Data Fields:</b>Student ID (Anonymized)AgeSemesterGPALibrary Visits (Total)Library Visits per WeekWeeks with Library Visits
DOI: 10.6084/m9.figshare.28463738.v1
title: <b>Simulated environmental temperature rise may alter pest relative dominance by modifying species interaction in an aphid community</b>

description: Four aphid species abundance data at 5 mean temperatures under 2 population conditions.
DOI: 10.6084/m9.figshare.26354150.v1
title: Genomic characterization of a reemerging Chikungunya outbreak in Kedougou, Southeastern Senegal, 2023

description: Chikungunya virus has caused millions of cases worldwide over the past 20 years, with recent outbreaks in Kedougou region in the southeastern Senegal, West Africa. Genomic characterization highlights that an ongoing epidemic in Kedougou in 2023 is not due to an introduction event but caused by the re-emergence of an endemic strain evolving linearly in a sylvatic context.
DOI: 10.6084/m9.figshare.28008764.v1
title: Brand, Loyalty & Technology’s Impact on Buying Television!

description: This paper presents the market forces that influence customers’ choices in new television series selections with pull and push demands. Dealers and retailers perform upselling trends to attract customers and promote product sales. The study was conducted to understand customers' current buying behavior for LED/LCD TV sets offered by leading manufacturers in India and sold through the retail network in Bangalore. This study has concluded that there is limited scope in addressing the WANT of customers for their future needs. There is a need for further research to establish core development in technology selling when the “Customer is King,” and he/she knows his/her preference before stepping into any showroom.
DOI: 10.6084/m9.figshare.28139135.v1
title: Ax-to-Grind-Urdu-Dataset

description: —Misinformation can seriously impact society, affecting anything from public opinion to institutional confidence and the political horizon of a state. Fake News (FN) proliferation on online websites and Online Social Networks (OSNs) has increased profusely. Various fact-checking websites include news in English and barely provide information about FN in regional languages. Thus, the Urdu FN purveyors cannot be discerned using fact-checking portals. State-of-the-art (SOTA) approaches for Fake News Detection (FND) count upon appropriately labelled and large datasets. FND in regional and resource-constrained languages lags due to the lack of limited-sized datasets and legitimate lexical resources. The previous datasets for Urdu FND are limited-sized, domain-restricted, publicly unavailable and not manually verified where the news is translated from English into Urdu. In this paper, we curate and contribute the first largest publicly available dataset for Urdu FND, “Ax-to-Grind Urdu”, to bridge the identified gaps and limitations of existing Urdu datasets in the literature. It constitutes 10,083 fake and real news on fifteen domains collected from leading and authentic Urdu newspapers and news channel websites in Pakistan and India. FN for the Ax-to-Grind dataset is collected from websites and crowd-sourcing. The dataset contains news items in Urdu from the year 2017 to the year 2023. Expert journalists annotated the dataset. We benchmark the dataset with an ensemble model of mBERT, XLNet, and XLM-RoBERTa. The selected models are originally trained on multilingual large corpora. The results of the proposed model are based on performance metrics, F1-score, accuracy, precision, recall and MCC value. F1-score of 0.924, accuracy of 0.956, precision of 0.942, recall of 0.940 and an MCC value of 0.902 demonstrate the effectiveness of the proposed approach for Urdu FND. Comparison analysis with SOTA ML and DL models and existing Urdu benchmark datasets exhibit that the ensemble model outperforms them for Urdu FND.
DOI: 10.6084/m9.figshare.3517319.v1
title: Appendix C. Taxonomic orders, represented families, and total abundance of terrestrial invertebrates collected at 8 pairs of grassland sites from 2005 to 2008 in north-central Oklahoma, USA.

description: Taxonomic orders, represented families, and total abundance of terrestrial invertebrates collected at 8 pairs of grassland sites from 2005 to 2008 in north-central Oklahoma, USA.
DOI: 10.6084/m9.figshare.15124218.v1
title: Dark skin coloration in Chernobyl tree frogs

description: Dataset of "Dark skin coloration in Chernobyl tree frogs"
DOI: 10.6084/m9.figshare.23898012.v1
title: Upper Limb EMG_6 Movements

description: <b>Device</b>: Ot Bioelectronica<b>fs</b>=2048<b>type of electrode: </b>bipolar<b>electrode placement:</b> 1 on biceps, 1 on flexor digitorium, 1 on extensor digitorium, 8 were placed equidistantly below the radio-humeral joint<br><b>movements</b>=6abduction of fingers, flexion of fingers, extension of wrist, radial deviation of wrist, ulnar deviation of wrist, close hand wrist extension <b>repition</b>=4 <b>time for movement=</b>5s<b>time for rest</b>=3s<b>Gain</b>=1K<br> The dataset includes separate files for each movement, which enables easy access and analysis for researchers and clinicians interested in studying these specific movements and their corresponding EMG patterns.
DOI: 10.6084/m9.figshare.25787580.v4
title: <b> </b><b>Experimental data of Hypotrachyna cirrhata (Fr.) Hale ex Sipman</b>

description: In general, the methanolic extract obtained from <i>H. cirrhata</i> contains diverse phytochemical compounds that contribute to treating various diseases. This study revealed notable antioxidant, anti-diabetic, and anti-bacterial attributes, displaying impressive IC<sub>50</sub> values and zones of inhibition in comparison to prior research. The anti-oxidant and alpha-glucosidase inhibition activities of the ethyl acetate extract of <i>H. cirrhata </i>were noteworthy, demonstrating an IC<sub>50</sub> value of 10.37 ± 0.62 for anti-oxidant activity and 1.17 ± 0.50 for alpha-glucosidase inhibition. The current investigation consolidates information on the bioactive elements in <i>H. cirrhata</i>, identified through LC-MS, facilitating the identification of eight lichen substances. A comprehensive molecular modeling analysis of the primary components, involving five compounds functioning as α-glucosidase binders, was conducted by considering both active and allosteric pockets as a result high binding energy was showed by salazinic acid with -9.9 kcal/mole. Computational analysis reveals the potent anti-diabetic properties of salazinic acid, as demonstrated through molecular docking, molecular dynamics simulations, ADMET analysis, and free energy calculations.
DOI: 10.6084/m9.figshare.10265396.v2
title: Raw data: Optimization of glutaminase-free L-asparaginase production using mangrove endophytic Lysinibacillus fusiformis B27

description: The data consists ofAll 16 experiments resulting in micromoles ammoniaResults for confirmatory experimentimages of all 31 isolatesUncropped, unedited blots from genomeSequence of B27Uncropped, unedited image of Gram stain of B27, as shown in Figure 1B
DOI: 10.6084/m9.figshare.11625906.v1
title: shape_vertices.txt

description: (x,y,z) locations of the vertices of the low-poly Arrokoth shape model in km, relative to the center of mass.<br>