cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2zd7tp
title: Occurrence Download

description: A dataset containing 49025 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Decapterus macarellus"
 ]
}

 The dataset includes 49025 records from 205 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060576-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17521879
title: Data necessary to run differential gene expression and cell type deconvolution of bulk-RNA-seq data performed in atherosclerotic human carotid artery samples

description: Counts_batch_corrected.rds: Batch corrected bulk-rNA-seq counts

GSE159677_filtered_batch_corrected_clustered_annotated.rds: Annotated scRNA-seq dataset downloaded from GEO (GSE159677), used for cell type deconvolution.

sample_maifest_with_pat_id_conversion.csv: Dataframe of patient metadata.
DOI: 10.5281/zenodo.17521878
title: Data necessary to run differential gene expression and cell type deconvolution of bulk-RNA-seq data performed in atherosclerotic human carotid artery samples

description: Counts_batch_corrected.rds: Batch corrected bulk-rNA-seq counts

GSE159677_filtered_batch_corrected_clustered_annotated.rds: Annotated scRNA-seq dataset downloaded from GEO (GSE159677), used for cell type deconvolution.

sample_maifest_with_pat_id_conversion.csv: Dataframe of patient metadata.
DOI: 10.15468/dl.mhjq63
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_0_GID","value":"ARG","matchCase":false},{"type":"equals","key":"GADM_LEVEL_1_GID","value":"ARG.22_1","matchCase":false},{"type":"equals","key":"GADM_LEVEL_2_GID","value":"ARG.22.27_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060580-251120083545085/datasets/export for details.
DOI: 10.5281/zenodo.17988764
title: ARTUR KONAN DOYL ASARLARIDA ANTROPONIMLARNING LINVOKULTUROLOGIK XUSUSIYATLARI ("SHERLOK XOLMS HAQIDA HIKOYALAR" ASARI BO'YICHA)
DOI: 10.5281/zenodo.17988763
title: ARTUR KONAN DOYL ASARLARIDA ANTROPONIMLARNING LINVOKULTUROLOGIK XUSUSIYATLARI ("SHERLOK XOLMS HAQIDA HIKOYALAR" ASARI BO'YICHA)
DOI: 10.15468/dl.wnwmz4
title: Occurrence Download

description: A dataset containing 1739 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calephorus compressicornis"
 ]
}

 The dataset includes 1739 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060579-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14871289
title: Dataset for Exploring Performance Limits of Binding Inhibition Assays

description: The dataset provides relevant raw and processed Data supporting the manuscript "EXPLORING PERFORMANCE LIMITS OF BINDING INHIBITION ASSAYS". The manuscript describes the theoretical study linking IC50, KD of the interaction, and limit of detection in the binding inhibition assay. Experimental confirmation of the theoretical trends with SPR biosensor is provided. The manuscript aims to provide a general guidance to the design of binding inhibition assays yielding the best performance.
DOI: 10.5281/zenodo.17520897
title: Preprocessed h5ad files of scRNA-seq performed on atherosclerotic human carotid artery samples

description: Description of data

For single cell RNA sequencing of human carotid arteries, samples were harvested during CEA in our Department for Vascular and Endovascular Surgery. In total 17 plaques  were minced and digested using the Multi Tissue Dissociation Kit 2 (Miltenyi Biotech, 130-110-203) and the 37 C_Mulit_G program (GentleMACS Dissociator; Miltenyi Biotech, 130-093-235) according to the manufacturer's instructions. The cell suspension was cleaned up and finally resuspended in PBS + 0,04% BSA. Cells were loaded into a 10xGenomics microfluidics Chip G and encapsulated with barcoded oligo-dT-containing gel beads. Gel-Beads-in-emulsion (GEM) cleanup, cDNA amplification and 3´GeneExpression Library Construction was performed according to the manu-facturer´s instructions (CG000204 Rev D). Libraries from individual patient samples 1-10 (sequencing facility 1) were multiplexed into one lane before sequencing on an Illumina NovaSeq6000 instrument. One whole flow-cell was occupied and used for sequencing. This data has been deposited in NCBI's Gene Expression Omnibus and is accessible through GEO Series accession number GSE247238. Libraries from individual patient samples 11-17 (sequencing facility 2, GSE294291) were loaded on an Illumina NovaSeq with 2 × 150 paired-end kits and sequenced with Novogene (Martinsried, Germany). 

Description of files 



GRCh38-p14-Gencode_v44_with_intron_final_data.h5ad: Anndata object containing final count matrix and metadata variables of scRNA-seq data used in study. 

scRNA_data_column_descriptions.md: description of .obs columns in the Anndata object. 


Detailed description of preprocessing steps can be found in our manuscript.
DOI: 10.5281/zenodo.17520898
title: Preprocessed h5ad files of scRNA-seq performed on atherosclerotic human carotid artery samples

description: Description of data

For single cell RNA sequencing of human carotid arteries, samples were harvested during CEA in our Department for Vascular and Endovascular Surgery. In total 17 plaques  were minced and digested using the Multi Tissue Dissociation Kit 2 (Miltenyi Biotech, 130-110-203) and the 37 C_Mulit_G program (GentleMACS Dissociator; Miltenyi Biotech, 130-093-235) according to the manufacturer's instructions. The cell suspension was cleaned up and finally resuspended in PBS + 0,04% BSA. Cells were loaded into a 10xGenomics microfluidics Chip G and encapsulated with barcoded oligo-dT-containing gel beads. Gel-Beads-in-emulsion (GEM) cleanup, cDNA amplification and 3´GeneExpression Library Construction was performed according to the manu-facturer´s instructions (CG000204 Rev D). Libraries from individual patient samples 1-10 (sequencing facility 1) were multiplexed into one lane before sequencing on an Illumina NovaSeq6000 instrument. One whole flow-cell was occupied and used for sequencing. This data has been deposited in NCBI's Gene Expression Omnibus and is accessible through GEO Series accession number GSE247238. Libraries from individual patient samples 11-17 (sequencing facility 2, GSE294291) were loaded on an Illumina NovaSeq with 2 × 150 paired-end kits and sequenced with Novogene (Martinsried, Germany). 

Description of files 



GRCh38-p14-Gencode_v44_with_intron_final_data.h5ad: Anndata object containing final count matrix and metadata variables of scRNA-seq data used in study. 

scRNA_data_column_descriptions.md: description of .obs columns in the Anndata object. 


Detailed description of preprocessing steps can be found in our manuscript.
DOI: 10.15468/dl.nbjhnh
title: Occurrence Download

description: A dataset containing 10 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 (CAST(occurrence.taxonkey AS INTEGER) = 5226829 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 5226829 OR CAST(occurrence.kingdomkey AS INTEGER) = 5226829 OR CAST(occurrence.phylumkey AS INTEGER) = 5226829 OR CAST(occurrence.classkey AS INTEGER) = 5226829 OR CAST(occurrence.orderkey AS INTEGER) = 5226829 OR CAST(occurrence.familykey AS INTEGER) = 5226829 OR CAST(occurrence.genuskey AS INTEGER) = 5226829 OR CAST(occurrence.specieskey AS INTEGER) = 5226829)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 10 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060562-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p34e6y
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bungarus bungaroides"
 ]
}

 The dataset includes 25 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060582-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17988790
title: EFFECTIVE ORGANIZATION OF LOCAL GOVERNMENT IN DEVELOPING THE DIGITAL ECONOMY
DOI: 10.5281/zenodo.17988789
title: EFFECTIVE ORGANIZATION OF LOCAL GOVERNMENT IN DEVELOPING THE DIGITAL ECONOMY
DOI: 10.15468/dl.uwqjy2
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.24_1",
 "TaxonKey is Phylloscartes eximius"
 ]
}

 The dataset includes 26 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060584-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsrr6r
title: Occurrence Download

description: A dataset containing 27925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tracheophyta)",
 "Geometry POLYGON ((12.9484 47.54688, 12.9834 47.54688, 12.9834 47.58188, 12.9484 47.58188, 12.9484 47.54688))"
 ]
}

 The dataset includes 27925 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060583-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30920309
title: Mating data-LO

description: <i>Latheticus oryzae</i> Waterhouse is a cosmopolitan secondary pest of stored products, yet it remains an understudied species. This study examined the courtship and mating sequence of <i>L. oryzae</i>, as well as the behavioral lateralization, exploring its influence on copulation success. Males of <i>L. oryzae</i> showed a left-biased tendency across various phases of mating (i.e., approach of the female, mounting, leaving). Approaching and leaving side significantly affected copulation success rates, in contrast to the mounting side. Left-biased <i>L. oryzae</i> males achieved higher mating success and demonstrated significantly shorter mate detection and copulation attempt durations compared to males of the other directions (back, front, and right). From a control perspective, the strong directional tendency of <i>L. oryzae</i> at the mating behavior may offer novel opportunities for pest management strategies that exploit lateralization-based disruptions. Overall, these findings establish the first comprehensive description of the mating procedure of <i>L. oryzae</i> and highlight the functional significance of behavioral asymmetries in the copulation success of stored-product pests.
DOI: 10.6084/m9.figshare.30920309.v1
title: Mating data-LO

description: <i>Latheticus oryzae</i> Waterhouse is a cosmopolitan secondary pest of stored products, yet it remains an understudied species. This study examined the courtship and mating sequence of <i>L. oryzae</i>, as well as the behavioral lateralization, exploring its influence on copulation success. Males of <i>L. oryzae</i> showed a left-biased tendency across various phases of mating (i.e., approach of the female, mounting, leaving). Approaching and leaving side significantly affected copulation success rates, in contrast to the mounting side. Left-biased <i>L. oryzae</i> males achieved higher mating success and demonstrated significantly shorter mate detection and copulation attempt durations compared to males of the other directions (back, front, and right). From a control perspective, the strong directional tendency of <i>L. oryzae</i> at the mating behavior may offer novel opportunities for pest management strategies that exploit lateralization-based disruptions. Overall, these findings establish the first comprehensive description of the mating procedure of <i>L. oryzae</i> and highlight the functional significance of behavioral asymmetries in the copulation success of stored-product pests.
DOI: 10.5281/zenodo.17988810
title: ORGANIZING THE STRATEGIC MANAGEMENT OF KNITTING AND SEWING ENTERPRISES IN THE DIGITAL ECONOMY
DOI: 10.5281/zenodo.17988809
title: ORGANIZING THE STRATEGIC MANAGEMENT OF KNITTING AND SEWING ENTERPRISES IN THE DIGITAL ECONOMY
DOI: 10.17632/4w282jff4b
title: Marilya_Manuscript_DS

description: Banco de dados do artigo "Interstratified clay minerals control the mineralogical differentiation of Planosols under semiarid climate".
DOI: 10.17632/4w282jff4b.2
title: Marilya_Manuscript_DS

description: Banco de dados do artigo "Interstratified clay minerals control the mineralogical differentiation of Planosols under semiarid climate".
DOI: 10.17632/zjwz8d5t5v
title: Segmentation of Edinburgh Pipe Phantom scans for resolution integral measurements

description: The Edinburgh Pipe Phantom is a test-object used to measure the resolution integral - a single, dimensionless figure-of-merit representative of the overall imaging performance of ultrasound scanners.
The Edinburgh Pipe Phantom consists of a block of the IEC agar-based tissue-mimicking material with wall-less anechoic pipes moulded within it with diameters ranging 0.4-8mm. Measurements are currently done visually when scanning the Edinburgh Pipe Phantom, we suggest using a digital approach based on machine learning to automatically segment and calculate resolution integral values.
Scans from ten different scanner/probe combinations were acquired and manually annotated to segment out the pipe sections in accordance with the visual values, and split into train/validation/test subsets using a 70/20/10 split.

Scanners:
- GE Logiq E10 (C1-6VND, C2-9VND, L2-9VND)
- Mindray A20 (L33-8U, SC6-1GU, SLM10-3U)
- Samsung R20 (CA1-7S, Ca3-10A, LA2-9S, LA2-14A)
Total: 162 images
DOI: 10.17632/zjwz8d5t5v.2
title: Segmentation of Edinburgh Pipe Phantom scans for resolution integral measurements

description: The Edinburgh Pipe Phantom is a test-object used to measure the resolution integral - a single, dimensionless figure-of-merit representative of the overall imaging performance of ultrasound scanners.
The Edinburgh Pipe Phantom consists of a block of the IEC agar-based tissue-mimicking material with wall-less anechoic pipes moulded within it with diameters ranging 0.4-8mm. Measurements are currently done visually when scanning the Edinburgh Pipe Phantom, we suggest using a digital approach based on machine learning to automatically segment and calculate resolution integral values.
Scans from ten different scanner/probe combinations were acquired and manually annotated to segment out the pipe sections in accordance with the visual values, and split into train/validation/test subsets using a 70/20/10 split.

Scanners:
- GE Logiq E10 (C1-6VND, C2-9VND, L2-9VND)
- Mindray A20 (L33-8U, SC6-1GU, SLM10-3U)
- Samsung R20 (CA1-7S, Ca3-10A, LA2-9S, LA2-14A)
Total: 162 images
DOI: 10.17632/c9m85vd4zt
title: Causes and management of pellagra in the 21st century: A systematic review

description: This systematic review was conducted following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) checklist.5 The study protocol was registered on PROSPERO (CRD42022381416). Relevant case-control studies, case reports, and case series published in English between 2000-2023 were included. Commentaries, editorials, review articles, book chapters, or oral and poster communications were not considered for inclusion. Only papers reporting patients with clinical manifestations consistent with pellagra and who showed improvement after vitamin B3 administration or in whom niacin deficiency was confirmed through serologic and/or urinary tests were included. We searched PubMed and Scopus databases up to 9th January 2023, to identify eligible papers. Results of the systematic review are summarized in the table attached.
DOI: 10.17632/c9m85vd4zt.2
title: Causes and management of pellagra in the 21st century: A systematic review

description: This systematic review was conducted following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) checklist.5 The study protocol was registered on PROSPERO (CRD42022381416). Relevant case-control studies, case reports, and case series published in English between 2000-2023 were included. Commentaries, editorials, review articles, book chapters, or oral and poster communications were not considered for inclusion. Only papers reporting patients with clinical manifestations consistent with pellagra and who showed improvement after vitamin B3 administration or in whom niacin deficiency was confirmed through serologic and/or urinary tests were included. We searched PubMed and Scopus databases up to 9th January 2023, to identify eligible papers. Results of the systematic review are summarized in the table attached.
DOI: 10.15468/dl.nqpn9z
title: Occurrence Download

description: A dataset containing 17565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 55.0",
 "DecimalLatitude is less than or equal to 60.0",
 "DecimalLongitude is greater than or equal to -80.0",
 "DecimalLongitude is less than or equal to -75.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 17565 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060585-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/pt/eoypin
title: Data from Future scenarios for river exports of multiple pollutants by sources and sub-basins worldwide: rising pollution for the Indian Ocean

description: In the future, rivers may export more pollutants to coastal waters, driven by socio-economic development, increased material consumption, and climate change. 
However, existing scenarios often ignore multi-pollutant problems. Here, we aim to explore future trends in river exports of nutrients (N and P), plastics (macro and micro),
and emerging contaminants (triclosan and diclofenac) at the sub-basin scale in the world by developing and applying the process-based MARINA-Multi model for diverging scenarios. In our MARINA-Multi (Model to Assess River Inputs of pollutaNts to the seAs) model, we implemented two new multi-pollutant scenarios: “Sustainability-driven Future” (SD) and “Economy-driven Future” (ED). In ED, river exports of nutrients and microplastics will double by 2100 globally. For SD, a decrease of up to 83% is projected for all pollutants by 2100. Diffuse sources such as fertilizers are largely responsible for increasing nutrient pollution in the two scenarios. Point sources namely sewage systems are largely responsible for increasing microplastic pollution in the ED scenario. In both scenarios, the Indian Ocean will receive up to 400% more pollutants from rivers by 2100 because of growing population, urbanization, and poor waste management in the African and Asian basins. The situation is different for the Mediterranean Sea and the Pacific Ocean (mainly less future pollution) and the Atlantic Ocean and Arctic Ocean (more or less future pollution depending on sub-basin and scenario). Globally, 56-78% of people are expected to live in more polluted river basins in the future, challenging sustainable development goals for clean waters.

Project funded by: Marie Skłodowska-Curie Actions, inventWater — Grant Agreement No. 956623
DOI: 10.17028/rd.lboro.26347438
title: Supplementary data for: Magneto-thermoelectric performance of bulk composite Fe3O4/Pt pellets: combined spin Seebeck and anomalous Nernst effects

description: Supporting data for "<b>Magneto-thermoelectric performance of bulk composite Fe3O4/Pt pellets: combined spin Seebeck and anomalous Nernst effects.</b>"Processed data used in manuscript. Scripts used for data analysis included as Notebook files within the Origin project.Further data available on request.Article abstractIn this article, we show the measurement of the magneto-thermoelectric effect (spin Seebeck and anomalous Nernst effects) of bulk composite pellets prepared from nanopowders of Fe<sub>3</sub>O<sub>4</sub> and Pt. We compare structural, magnetic, and thermoelectric data as the Pt% is increased against a control series of pellets, where sintering temperature and time are varied and a 5 nm layer of Pt is sputtered onto the surface. We also compare the measured thermoelectric efficiency and figure of merit of the composite pellets to our control and a benchmark thin film, where we find an order-of-magnitude increase. This suggests that composite pellets could be a route forward in scaling up the spin Seebeck effect from thin film to bulk.© the authors