cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48690/1524196
title: LandScan Global 2000

description: Using an innovative approach that combines Geographic Information Science, remote sensing technology, and machine learning algorithms, ORNL's LandScan is the community standard for global population distribution. At 30 arc-second (approximately 1 km) resolution, LandScan is the finest resolution global population distribution data available representing an 'ambient population' (average over 24 hours). The LandScan algorithm, an R&D 100 Award Winner, uses spatial data, high-resolution imagery exploitation, and a multi-variable dasymetric modeling approach to disaggregate census counts within an administrative boundary. LandScan population data are spatially explicit - unlike tabular Census data. Since no single population distribution model can account for the differences in spatial data availability, quality, scale, and accuracy as well as the differences in cultural settlement practices, LandScan population distribution models are tailored to match the data conditions and geographical nature of each individual country and region. By modeling an ambient population, LandScan Global captures the full potential activity space of people throughout the course of the day and night rather than just a residential location.
DOI: 10.5066/f7028pn4
title: Climate warming of Wisconsin lakes can be either amplified or suppressed by trends in water clarity

description: While climate change is rapidly warming lakes and reservoirs, warming rates can be highly variable among systems because lake characteristics can modulate atmospheric forcing. While it is known that water clarity changes can alter lake water temperatures, it is unknown if frequently observed water clarity trends are sufficient to meaningfully impact the thermal trajectories of diverse lake populations. Using process-based modeling and empirical observations, this study demonstrates that water clarity changes of about 1% per year amplifies or suppresses warming at rates comparable to climate-induced warming. These results demonstrate that trends in water clarity, which are occurring in many lakes, may be as important as rising air temperatures in determining how waterbodies respond to climate change. These data support the following publication: Jordan S. Read, Luke A. Winslow, Gretchen J.A. Hansen, Jamon Van Den Hoek, Paul C. Hanson, Louise C. Bruce, 2014, Simulating 2368 temperate lakes reveals weak coherence in stratification phenology: Ecological Modeling, http://dx.doi.org/10.1016/j.ecolmodel.2014.07.029.
DOI: 10.5281/zenodo.10103323
title: Argentina National Map of Crops 2022/2023
title: Mapa Nacional de Cultivos de Argentina Campaña 2022/2023

description: Crop type map covering the main agricultural areas of Argentina for growing season 2022/2023. This version includes two different maps for winter and summer crops. Maps were generated using supervised classification methods with samples obtained from on-road surveys and Landsat satellite images along the growing season. Files provided include a Geotiff version of each map with a resolution of 30 m and legend style files. The report includes the methodological details, map legend and accuracy assessments (in Spanish). A web visualizer can be accessed through the following link: https://deabelle.users.earthengine.app/view/mnc22-23
DOI: 10.5281/zenodo.13789873
title: Raw and processed single-crystal diffraction data of the compound DPPM(AuBr)2
DOI: 10.5281/zenodo.13790014
title: Raw and processed single-crystal diffraction data of the compound [(Ph3PO)2H][AuI4]
DOI: 10.5281/zenodo.14515753
title: Hafeez et al., "Septoria tritici blotch resistance gene Stb15 encodes a lectin receptor-like kinase" - pathology data

description: Pathology data reported by Hafeez et al. 2025, "Septoria tritici blotch resistance gene Stb15 encodes a lectin receptor-like kinase"
DOI: 10.5281/zenodo.14538245
title: New and lost coast due to retreat/advance of Northern Hemisphere marine-terminating glaciers in the 21st century

description: The dataset is related to the article "New coasts emerging from the retreat of Northern Hemisphere marine-terminating glaciers in the 21st century" submitted to Nature Climate Changefirst version of the datset: https://zenodo.org/records/14034274
DOI: 10.5281/zenodo.14607136
title: Dataset for Arctium lappa genome

description: Dataset containing the dataset for the Arctium lappa genome sequencing project. 

 



Draft Genome (contigs)

Scaffolded Genome (against reference genome)

Recovered ITS1-5.8S-ITS2 contig

ITS2 alignment

Variant Calling File

Annotated Variant Calling File
DOI: 10.5281/zenodo.15023110
title: Source code and data for 'Spatially varying parameters improve carbon cycle modeling in the Amazon rainforest with ORCHIDEE r8849'

description: Source code and data for 'Spatially varying parameters improve carbon cycle modeling in the Amazon rainforest with ORCHIDEE r8849'. The article was submitted to GMD. Replace pathin in "GMD_code.ipynb" with your own path. Make sure to install all the python package.
DOI: 10.5281/zenodo.3431873
title: CHAOS - Combined (CT-MR) Healthy Abdominal Organ Segmentation Challenge Data

description: This is the train and testing dataset of Combined (CT-MR) Healthy Abdominal Organ Segmentation (CHAOS) Challenge. This data consists of images of Abdominal CT and MRI from different patients. There are 20 training and 20 testing cases in the CT dataset. MRI dataset contains 20 training and 20 testing cases with T1-Dual and T2 SPIR sequences. Train data contains both DICOM images and their ground truth masks. The testing set only contains DICOM images. In CT cases only livers were annotated. In MRI cases, livers, left/right kidneys, and spleens were annotated. For further information about the data and challenge, please visit https://chaos.grand-challenge.org/ and read the CHAOS_Submission_Manual.pdf <em><strong>Important note: </strong>Ground truths/references of the test data are reserved for challenge validation and <strong>will never be shared publicly. </strong>Such requests will be ignored<strong>.</strong></em> Scientists may use this data not only join to the CHAOS challenge but also for other works as long as they give appropriate credit, provide a link to the license, and indicate if changes were made. Bibtex: <pre><code>@dataset{CHAOSdata2019, author = {Ali Emre Kavur and M. Alper Selver and Oğuz Dicle and Mustafa Barış and N. Sinem Gezer}, title = {{CHAOS - Combined (CT-MR) Healthy Abdominal Organ Segmentation Challenge Data}}, month = Apr, year = 2019, publisher = {Zenodo}, version = {v1.03}, doi = {10.5281/zenodo.3362844}, url = {https://doi.org/10.5281/zenodo.3362844} }</code></pre> IEEE Style: <pre><code>Ali Emre Kavur, M. Alper Selver, Oğuz Dicle, Mustafa Barış, and N. Sinem Gezer, "CHAOS - Combined (CT-MR) Healthy Abdominal Organ Segmentation Challenge Data". Zenodo, 11-Apr-2019.</code></pre> APA Style: <pre><code>Ali Emre Kavur, M. Alper Selver, Oğuz Dicle, Mustafa Barış, & N. Sinem Gezer. (2019). CHAOS - Combined (CT-MR) Healthy Abdominal Organ Segmentation Challenge Data (Version v1.03) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.3362844</code></pre>
DOI: 10.5281/zenodo.5156043
title: Life cycle inventories for on-road vehicles

description: Life cycle inventory datasets for current on-road vehicles in Switzerland and Europe. These datasets can be consumed by brightway2 (https://brightway.dev/) and Simapro 9.x (https://simapro.com/), and link to either ecoinvent 3.6 (cut-off), ecoinvent 3.7.1 (cut-off), ecoinvent 3.8 (cut-off), ecoinvent 3.9 (cut-off) or UVEK:2018. These datasets can be cited as: Sacchi, R., Bauer, C. (2023) Life cycle inventories for on-road vehicles. Paul Scherrer Institut, Villigen, Switzerland.
DOI: 10.5281/zenodo.5676470
title: Light pollution affects invasive and native plant traits important to plant competition and herbivorous insects

description: Dataset that goes with our accepted publication in Biological Invasions entitled "Light pollution affects invasive and native plant traits important to plant competition and herbivorous insects"
DOI: 10.5281/zenodo.8378303
title: Extreme Weather Event database over Aotearoa New Zealand

description: <strong>The Aotearoa New Zealand (ANZ) Extreme Weather Events (EWE) database </strong>(EWE_database_V1.0.0.xlsx)<strong> is a comprehensive record of extreme weather events in ANZ. The events listed in this database have been carefully assessed and categorized based on their meteorological significance, considering their rarity and whether they broke records or triggered official weather warnings. Some of the metrics used to classify each event rely on subjective judgment and expert opinions. The database captures meteorologically significant events, including those that have caused substantial damage to properties or led to casualties, and, in some cases, includes supplementary information about their socioeconomic impacts. The information in the EWE database is primarily sourced from the Meteorological Service of New Zealand Ltd (MetService) and the National Institute of Water and Atmospheric Research (NIWA). Additional impact data have been added from various media sources, with insured loss data for some events sourced from the Insurance Council of New Zealand (ICNZ).</strong> Note - For more information about the database and the other additional files, please look into the Metadata (Metadata_EWE_V.1.0.0.docx) and the supplementary document (Supplementary document on EWE_V.1.0.0.docx).
description: The database was created as part of a five-year multidisciplinary research programme funded by the New Zealand Ministry of Business, Innovation, and Employment (MBIE) called Whakahura - Extreme Events and the Emergence of Climate Change (Grant number: RTVU1906) administered through Victoria University of Wellington - Te Herenga Waka, New Zealand.
DOI: 10.6084/m9.figshare.1512427
title: brain tumor dataset

description: This brain tumor dataset contains 3064 T1-weighted contrast-inhanced images with three kinds of brain tumor. Detailed information of the dataset can be found in the readme file.The README file is updated:Add image acquisition protocolAdd MATLAB code to convert .mat file to jpg images
DOI: 10.6084/m9.figshare.27157602
title: iPhoneLiDAR_measurement data20241003.csv

description: The LiDAR-equipped iPhone (iPhone-LiDAR) is highly portable for outdoor use and is significantly more cost-effective than other LiDAR-equipped devices such as uncrewed aerial vehicles (UAVs) or ground-based LiDAR. Therefore, this method holds practical promise for small-scale forest measurements. In this study, we conducted terrain mapping and positioning of newly planted small areas in northern Japan, as well as tree height measurements, using iPhone-LiDAR. The iPhone-LiDAR generated highly accurate 3D models, allowing detailed terrain measurements of the planted area. Although there were many false-positive points in the detection of tree positions, manual removal of these points made it possible to create a tree position map. This is believed to significantly reduce the workload compared to traditional survey methods. We also found LiDAR-estimated seedling heights to be underestimated due to some inevitable noise in the point cloud. Improvements in software, scanning, and analytical methodologies will open future possibilities for iPhone-LiDAR applications in forestry practices.
DOI: 10.6084/m9.figshare.28428899
title: Supplementary Material for: Iron Mettle- Unveiling an Unusual Incidental Case Report of Esophageal Ulcer

description: Background: Erosive injury to the upper gastrointestinal tract caused by therapeutic oral iron supplements is a rare occurrence. Although erosive injury to the mucosa of the upper gastrointestinal (GI) tract is commonly associated with overdoses of oral iron supplements, similar injuries can also occur with doses within the normal therapeutic range. Reports have documented upper gastrointestinal disorders induced by iron, primarily affecting the stomach and occasionally the esophagus. Iron preparations are initially absorbed as ferrous iron and then oxidized to ferric iron. Excess ferric iron, surpassing the binding capacity of transferrin, a binding protein, leads to cellular damage. Ferric iron directly corrodes the gastrointestinal mucosa and disrupts various cellular processes by generating free radicals and initiating lipid peroxidation.Case Description:A 55-year-old female with dysphagia, pain and anorexia showed linear to circumferential ulcers covered extensively with white slough around the central esophagus with thickened and erythematous mucosa with focal erosions on esophagogastroduodenoscopy. Conclusions:This case highlights a rare case report of Iron- Induced esophageal ulcer found incidentally and the significance of acknowledging that iron preparations can harm the esophageal mucosa especially in an Indian population where anemia is fairly predominant.
DOI: 10.6084/m9.figshare.28622465
title: Supplementary Material for: Association of neutrophil-to-lymphocyte ratio with incidence and disease progression in Parkinson's disease

description: Abstract
Background: The neutrophil-to-lymphocyte ratio (NLR) is widely regarded as a proxy for system inflammation. The previous study indicated that the NLR might be higher in Parkinson’s disease (PD) compared to healthy controls (HC). The study aimed to assess the role of system inflammation indicated by NLR in the incidence and progression of PD.
Methods: We included participants from the longitudinal population-based cohort, UK Biobank, to analyze the association of NLR and the risk of PD. We conducted the Cox proportional hazards analyses as the primary analysis to determine the association between baseline NLR value and the risk of PD in UK Biobank. Then we further used data from a disease-specific longitudinal cohort, Parkinson’s Progression Markers Initiative (PPMI), to evaluate the differences between individuals with higher PD risk, and early-stage PD patients in the values of NLR. Patients with PD were divided into two groups according to the median value of NLR (2.35). Linear mixed models (random intercept and random slope) were used to evaluate the relationship between the high/low NLR groups and the disease progression.
Results: A number of 288837 participants from UK Biobank were included and 1429 were diagnosed with incident PD. Among them, higher NLR was associated with an increased risk of incident PD in HC (per SD increment hazard ratio [HR], 1.041; P &lt; 0.001). A total of 349 early-stage PD patients, 438 individuals with higher PD risk, and 207 HC were included from PPMI. PD patients and individuals with higher PD risk had a significantly higher NLR compared to healthy controls. Higher NLR group was associated with a faster deterioration of the Montreal Cognitive Assessment score in PD patients in two years (β [SE] = -0.225 [0.080], P = 0.005).
Conclusion: In conclusion, increased NLR in HC was linked with a higher risk of incident PD, and higher NLR was associated with a faster cognitive decline in PD patients, which indicated that inflammation was involved in the incidence of PD and the cognitive decline in early-stage PD.
DOI: 10.6084/m9.figshare.28623284
title: Supplementary Material for: Difference in long-term mortality after Takotsubo Syndrome. The role of gender, disease burden, socioeconomic profile, and psychological distress.

description: Introduction
While Takotsubo Syndrome (TTS) is less common in men, their mortality rates surpass those of women. The influence of socioeconomic factors and psychological distress remains unexplored. This study aimed to investigate gender differences in socioeconomic profiles and psychological distress among patients with incident TTS, and to examine gender differences in survival after discharge, accounting for socioeconomic and psychological factors.
Methods
A nationwide cohort study using national registers included all patients discharged from Danish hospitals with an incident TTS diagnosis were eligible. Socioeconomic factors, including marital status, cohabitation status, labor market attachment, highest formal education, family income, and psychological distress, were assessed and compared. Cox regression models were applied to analyze the data.
Results
Of 662 patients with Takotsubo Syndrome discharged alive 79 (11.9%) were men with a median age of 67 years (IQR 62–77). Men with TTS were socioeconomically disadvantaged compared to women. Unadjusted analyses indicated that male gender was associated with increased mortality (HR 2.61, 95% CI 1.18–3.25, P=0.009). Low income, living alone, being widowed, and receiving a retirement pension were all significantly associated with three-year mortality risk. However, in the main adjusted model, aside from the gender difference, only the Charlson Comorbidity Index was significantly associated with a higher mortality risk (HR 1.26, 95% CI 1.15–1.39, P&lt;0.001). No significant interactions between gender and socioeconomic variables were observed.
Conclusion
Men with TTS experienced greater socioeconomic disadvantages and higher three-year mortality than women, with comorbidity scores significantly influencing outcomes in both genders.
DOI: 10.6084/m9.figshare.28623293
title: Supplementary Material for: Unveiling the Hidden Risks: Herbal Medicine-Induced Renal Damage - A Case Series Analysis

description: Introduction
Herbal medications have been utilized for centuries to treat various ailments, yet their potential to induce renal damage is often underestimated. The popularity of herbal remedies, especially in rural India, stems from cultural beliefs in their holistic healing properties.
Case Presentations
This case series comprises four patients exhibiting varied renal presentations linked to herbal medication usage. Notably, oxalate nephropathy emerged as a predominant finding. Through comprehensive clinical assessments and renal biopsies, we elucidated the pathophysiological mechanisms underlying herbal nephrotoxicity. Timely recognition and discontinuation of the offending herb, alongside tailored therapeutic interventions like corticosteroid administration, facilitated favorable patient outcomes.
Conclusion
These cases underscore the importance of considering herbal remedies as potential culprits in renal dysfunction, particularly in regions where their usage is prevalent. Our findings emphasize the imperative for healthcare practitioners to proactively inquire about herbal medication use in renal patients. Heightened awareness and further research into the safety and mechanisms of herbal nephrotoxicity are essential for optimizing patient care and preventing herb-induced kidney injury.
DOI: 10.6084/m9.figshare.28631513
title: Supplementary Material for: Atezolizumaba plus bevacizumab is Associated with Favorable Overall Survival Over Lenvatinib in Patients with Unresectable Hepatocellular Carcinoma

description: Introduction: This study aimed to compare the effectiveness outcomes of Child-Pugh class A patients with unresectable hepatocellular carcinoma (HCC) treated with first-line atezolizumab-bevacizumab and lenvatinib.
Methods: This retrospective study included patients with Child-Pugh A unresectable HCC who were administered first-line treatment with either atezolizumab-bevacizumab (n = 368) or lenvatinib (n = 229) at Asan Medical Center (Seoul, Korea). Effectiveness outcomes were analyzed along with the inverse probability treatment weighting (IPTW) analysis to adjust for potential confounders. 
Results: Hepatitis B virus infection was the most common cause of HCC. With median follow-up duration of 11.9 for atezolizumab-bevacizumab and 20.9 months for the lenvatinib groups, patients treated with atezolizumab-bevacizumab exhibited superior progression-free survival (PFS) and overall survival (OS) than those treated with lenvatinib (median PFS 6.3 vs. 4.9 months, P = 0.031; and median OS 18.5 vs. 11.3 months, P &lt; 0.001). After IPTW adjustment, atezolizumab-bevacizumab remained associated with favorable OS (median OS of 17.9 vs. 12.3 months, P = 0.010). Treatment with atezolizumab-bevacizumab was an independent factor of OS in both the entire and IPTW-adjusted cohorts. For patients with a viral etiology, the atezolizumab-bevacizumab group exhibited significantly longer OS than the lenvatinib group in both entire and IPTW-adjusted cohorts (P &lt; 0.001 and P = 0.006, respectively). Conversely, both groups showed comparable OS among those with a nonviral etiology (P = 0.656 and P = 0.616, respectively).
Conclusions: Atezolizumab-bevacizumab showed superior OS compared to lenvatinib in Asian patients with unresectable HCC.
DOI: 10.6084/m9.figshare.28639481
title: Supplementary Material for: Integrating DCPR-R and DSM-5 into clinical psychosomatic practice in Taiwan: Their relationship with psychopathologies and quality of life

description: Introduction: This study aimed to assess the benefit of integrating the Diagnostic Criteria for Psychosomatic Research-Revised (DCPR-R) into the Diagnostic and Statistical Manual of Mental Disorders Fifth Edition (DSM-5). Specifically, it examined whether this integration enhances the understanding of psychopathologies and quality of life (QOL) in psychosomatic medicine.
Methods: In this cross-sectional study conducted in Taiwan, 277 patients from psychosomatic clinics and 225 community participants were included. Standardized interview tools based on DCPR-R and DSM-5 were used to assess the presence of various diagnoses. Participants also completed several scales related to persistent somatic symptoms, negative emotions, and QOL. Latent class analysis was used to explore the clustering of diagnoses, and multiple linear regression analysis was employed to investigate the relationship between diagnoses, psychopathologies, and QOL under conditions of possible comorbidity.
Results: Three classes were identified via latent class analysis: somatic symptoms, demoralization and stress, and insomnia. In the multivariate analysis considering multiple diagnoses simultaneously, the number of diagnoses significantly associated with psychopathologies and QOL was greatly reduced compared to the univariate analysis. Persistent somatization was more strongly associated with somatic distress than somatic symptom disorder. Several DCPR-R constructs showed significant associations with illness-related anxiety. The DCPR-R diagnoses with broader influences on QOL were demoralization, demoralization with hopelessness, and irritable mood.
Conclusions: The results suggest the potential clinical significance of integrating DCPR-R and DSM-5 in Eastern societies. The DCPR-R diagnoses with significant findings mentioned above may contribute to the personalized treatment plans for patients in psychosomatic medicine.