cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11658091
title: scTransformers - Dataset : Cross Tissue Immune Cells

description: The annotation of cell types on single cell RNA-seq data is a complex, uncertain and time-consuming task, requiring several methods and tools to be able to annotate cells appropriately and efficiently. To overcome these problems and uncertainties, numerous tools and scientific articles have emerged over the years. The rise of artificial intelligence in our lives (notably through chatGPT), has also imposed itself on the scientific world, bringing novelty and innovation to existing techniques and tools. These tools need to be tested and studied to verify their effectiveness. In this project, two cell annotation tools in single cell RNA-seq named scBERT and scGPT are of interest to CB2M because of their ability to resolve and avoid the uncertainties and problems mentioned above. We study here, through various analyses, including cross-validation and the use of multiple qualitative and numerical indicators, that cell annotation by those tools are effective for annotating cells from scRNA-seq.

Provided files:



cross_tissue_immune_cell_reference.tar.gz : Cell atlas across tissue in human immune system : Immune compartment of 15 tissues from six deceased adult donors. It contains 329,762 cells, 36,398 genes and 35 different cell types.

cross_tissue_immune_cell_output.tar.gz : All analysis output files

cross_tissue_immune_cell_container.tar.gz : Docker image and Singularity mages used for the analysis


See https://github.com/CIML-bioinformatic/CB2M_scTransformers for more details
DOI: 10.60712/si-id77903.1
title: StrainInfo SI-ID 77903.1

description: StrainInfo dataset 77903 about a strain of Podoscypha gillesii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77904.1
title: StrainInfo SI-ID 77904.1

description: StrainInfo dataset 77904 about a strain of Podoscypha gillesii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77983.1
title: StrainInfo SI-ID 77983.1

description: StrainInfo dataset 77983 about a strain of Scytinostroma duriusculum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77984.1
title: StrainInfo SI-ID 77984.1

description: StrainInfo dataset 77984 about a strain of Baltazaria eurasiaticogalactina. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77985.1
title: StrainInfo SI-ID 77985.1

description: StrainInfo dataset 77985 about a strain of Sistotrema raduloides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77986.1
title: StrainInfo SI-ID 77986.1

description: StrainInfo dataset 77986 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78042.1
title: StrainInfo SI-ID 78042.1

description: StrainInfo dataset 78042 about a strain of Scytinostroma phaeosarcum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78043.1
title: StrainInfo SI-ID 78043.1

description: StrainInfo dataset 78043 about a strain of Steccherinum confragosum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78044.1
title: StrainInfo SI-ID 78044.1

description: StrainInfo dataset 78044 about a strain of Steccherinum confragosum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78045.1
title: StrainInfo SI-ID 78045.1

description: StrainInfo dataset 78045 about a strain of Vararia amphithallica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77905.1
title: StrainInfo SI-ID 77905.1

description: StrainInfo dataset 77905 about a strain of Podoscypha involuta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77906.1
title: StrainInfo SI-ID 77906.1

description: StrainInfo dataset 77906 about a strain of Podoscypha involuta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77907.1
title: StrainInfo SI-ID 77907.1

description: StrainInfo dataset 77907 about a strain of Podoscypha involuta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77908.1
title: StrainInfo SI-ID 77908.1

description: StrainInfo dataset 77908 about a strain of Podoscypha involuta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77987.1
title: StrainInfo SI-ID 77987.1

description: StrainInfo dataset 77987 about a strain of Stereum lobatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77988.1
title: StrainInfo SI-ID 77988.1

description: StrainInfo dataset 77988 about a strain of Stereum reflexulum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77989.1
title: StrainInfo SI-ID 77989.1

description: StrainInfo dataset 77989 about a strain of Stereum reflexulum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77990.1
title: StrainInfo SI-ID 77990.1

description: StrainInfo dataset 77990 about a strain of Stereum subtomentosum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78046.1
title: StrainInfo SI-ID 78046.1

description: StrainInfo dataset 78046 about a strain of Vararia amphithallica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78047.1
title: StrainInfo SI-ID 78047.1

description: StrainInfo dataset 78047 about a strain of Xylobolus frustulatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78048.1
title: StrainInfo SI-ID 78048.1

description: StrainInfo dataset 78048 about a strain of Acanthophysium bisporum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77909.1
title: StrainInfo SI-ID 77909.1

description: StrainInfo dataset 77909 about a strain of Podoscypha multizonata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78049.1
title: StrainInfo SI-ID 78049.1

description: StrainInfo dataset 78049 about a strain of Acanthophysium thoenii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77910.1
title: StrainInfo SI-ID 77910.1

description: StrainInfo dataset 77910 about a strain of Podoscypha multizonata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77911.1
title: StrainInfo SI-ID 77911.1

description: StrainInfo dataset 77911 about a strain of Podoscypha multizonata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77991.1
title: StrainInfo SI-ID 77991.1

description: StrainInfo dataset 77991 about a strain of Vararia amphithallica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77992.1
title: StrainInfo SI-ID 77992.1

description: StrainInfo dataset 77992 about a strain of Vararia amphithallica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77993.1
title: StrainInfo SI-ID 77993.1

description: StrainInfo dataset 77993 about a strain of Vararia amphithallica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78050.1
title: StrainInfo SI-ID 78050.1

description: StrainInfo dataset 78050 about a strain of Gloeosoma mirabile. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78051.1
title: StrainInfo SI-ID 78051.1

description: StrainInfo dataset 78051 about a strain of Veluticeps ambigua. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78052.1
title: StrainInfo SI-ID 78052.1

description: StrainInfo dataset 78052 about a strain of Cymatoderma elegans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78053.1
title: StrainInfo SI-ID 78053.1

description: StrainInfo dataset 78053 about a strain of Dichostereum effuscatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77912.1
title: StrainInfo SI-ID 77912.1

description: StrainInfo dataset 77912 about a strain of Podoscypha multizonata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77913.1
title: StrainInfo SI-ID 77913.1

description: StrainInfo dataset 77913 about a strain of Podoscypha multizonata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77914.1
title: StrainInfo SI-ID 77914.1

description: StrainInfo dataset 77914 about a strain of Podoscypha multizonata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77915.1
title: StrainInfo SI-ID 77915.1

description: StrainInfo dataset 77915 about a strain of Podoscypha multizonata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77994.1
title: StrainInfo SI-ID 77994.1

description: StrainInfo dataset 77994 about a strain of Vararia amphithallica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77995.1
title: StrainInfo SI-ID 77995.1

description: StrainInfo dataset 77995 about a strain of Dichostereum effuscatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77996.1
title: StrainInfo SI-ID 77996.1

description: StrainInfo dataset 77996 about a strain of Dichostereum effuscatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77997.1
title: StrainInfo SI-ID 77997.1

description: StrainInfo dataset 77997 about a strain of Dichostereum effuscatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78054.1
title: StrainInfo SI-ID 78054.1

description: StrainInfo dataset 78054 about a strain of Duportella trigonosperma. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78055.1
title: StrainInfo SI-ID 78055.1

description: StrainInfo dataset 78055 about a strain of Duportella trigonosperma. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78056.1
title: StrainInfo SI-ID 78056.1

description: StrainInfo dataset 78056 about a strain of Epithele efibulata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77916.1
title: StrainInfo SI-ID 77916.1

description: StrainInfo dataset 77916 about a strain of Podoscypha multizonata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77917.1
title: StrainInfo SI-ID 77917.1

description: StrainInfo dataset 77917 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77918.1
title: StrainInfo SI-ID 77918.1

description: StrainInfo dataset 77918 about a strain of Podoscypha parvula. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77998.1
title: StrainInfo SI-ID 77998.1

description: StrainInfo dataset 77998 about a strain of Vararia gallica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77999.1
title: StrainInfo SI-ID 77999.1

description: StrainInfo dataset 77999 about a strain of Vararia gallica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78000.1
title: StrainInfo SI-ID 78000.1

description: StrainInfo dataset 78000 about a strain of Vararia insolita. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78057.1
title: StrainInfo SI-ID 78057.1

description: StrainInfo dataset 78057 about a strain of Hymenochaete acanthophysata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78058.1
title: StrainInfo SI-ID 78058.1

description: StrainInfo dataset 78058 about a strain of Hymenochaete adusta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78059.1
title: StrainInfo SI-ID 78059.1

description: StrainInfo dataset 78059 about a strain of Hymenochaete adusta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78060.1
title: StrainInfo SI-ID 78060.1

description: StrainInfo dataset 78060 about a strain of Hymenochaete pinnatifida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77919.1
title: StrainInfo SI-ID 77919.1

description: StrainInfo dataset 77919 about a strain of Podoscypha parvula. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77920.1
title: StrainInfo SI-ID 77920.1

description: StrainInfo dataset 77920 about a strain of Podoscypha parvula. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77921.1
title: StrainInfo SI-ID 77921.1

description: StrainInfo dataset 77921 about a strain of Podoscypha parvula. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id77922.1
title: StrainInfo SI-ID 77922.1

description: StrainInfo dataset 77922 about a strain of Podoscypha parvula. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78001.1
title: StrainInfo SI-ID 78001.1

description: StrainInfo dataset 78001 about a strain of Vararia insolita. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78002.1
title: StrainInfo SI-ID 78002.1

description: StrainInfo dataset 78002 about a strain of Vararia insolita. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78003.1
title: StrainInfo SI-ID 78003.1

description: StrainInfo dataset 78003 about a strain of Vararia sphaericospora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78004.1
title: StrainInfo SI-ID 78004.1

description: StrainInfo dataset 78004 about a strain of Dichostereum effuscatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id78061.1
title: StrainInfo SI-ID 78061.1

description: StrainInfo dataset 78061 about a strain of Hymenochaete pinnatifida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.