cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.eays3y
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pomatocheles stridulans Forest, 1987"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130749-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9azb54
title: Occurrence Download

description: A dataset containing 1401 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Cecropia Loefl."
 ]
}

 The dataset includes 1401 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130752-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ja7bd
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudohaustorius americanus (Pearse, 1908)"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131277-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.72e65v
title: Occurrence Download

description: A dataset containing 1602 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythrodontium longisetum (Hook.) Paris"
 ]
}

 The dataset includes 1602 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117871-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.deepfp
title: Occurrence Download

description: A dataset containing 379 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ylistrum japonicum (Gmelin, 1791)"
 ]
}

 The dataset includes 379 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0141666-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rb2269
title: Occurrence Download

description: A dataset containing 1974 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ceratotherium simum (Burchell, 1817)"
 ]
}

 The dataset includes 1974 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0280311-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqyp6y
title: Occurrence Download

description: A dataset containing 848 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodobryum grandifolium (Taylor) Schimp."
 ]
}

 The dataset includes 848 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117872-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gj949m
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudolambrus tarpeius (Adams & White, 1849)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131296-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpp2n4
title: Occurrence Download

description: A dataset containing 413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luzula plumosa subsp. plumosa",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 413 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192294-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6uv8p
title: Occurrence Download

description: A dataset containing 1490 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luzula desvauxii Kunth",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 1490 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163597-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.6811909
title: Dataset provided for : Sensing Ultrasound Localization Microscopy reveals glomeruli in rats and humans

description: Abstract : Estimation of glomerular function is a key element in the diagnosis of kidney disease. However, the study of glomeruli in the clinic remains indirect through urine and blood tests. Recent imaging technique called Ultrasound Localization Microscopy (ULM) originated from the ability to record continuous movements of individual microbubbles in the bloodstream. Although it improved the resolution of vascular imaging up to tenfold, the imaging of the smallest vessels had yet to be reported.

We acquired ultrasound sequences from living humans and rats and then applied filtering dividing the data set into slow-moving and fast-moving microbubbles. We performed a double tracking to highlight and characterize this new population of microbubbles with singular behaviors: we called this technique “sensing ULM” (sULM). We used post-mortem micro-CT for side-by-side confirmation in rats.

In this study, we report the observation of microbubbles flowing in capillaries bundles, i.e. the glomeruli, in the kidney in living humans and rats. We introduce a set of analysis tools dedicated to extracting quantitative information from individual microbubbles, like the remanence time or the normalized distance.

As glomeruli play a key role in kidney function, their observation could yield a deeper understanding of kidney diseases and provide a diagnostic tool for patients. More generally, it will bring imaging capabilities closer to the functional units of organs, which is one of the keys to understanding most diseases, like cancers, diabetes, or kidney failures.   

Academic reference to be cited : Denis, Bodard, Hingot, Chavignon, Battaglia, Renault, Lager, Aissani, Hélénon, Correas, and Couture. Sensing Ultrasound Localization Microscopy reveals glomeruli in rats and humans, eBioMedicine, 2023.

Related scripts and software application : https://github.com/EngineerJB/akebia

(New ! published in June 2024) Raw data : https://zenodo.org/records/11395562

Corresponding authors : 



Article : Louise Denis, louise.denis@sorbonne-universite.fr, Sylvain Bodard, sylvain.bodard@aphp.fr

Scripts, and codes : Louise Denis, louise.denis@sorbonne-universite.fr, Jacques Battaglia, jacques.battaglia@sorbonne-universite.fr

Materials, collaborations, rights and others: Olivier Couture, olivier.couture@sorbonne-universite.fr
description: Additional information on the data is available at : https://github.com/EngineerJB/akebia

(New ! published in June 2024) Raw data : https://zenodo.org/records/11395562
DOI: 10.5281/zenodo.6811910
title: Dataset provided for : Sensing Ultrasound Localization Microscopy reveals glomeruli in rats and humans

description: Abstract : Estimation of glomerular function is a key element in the diagnosis of kidney disease. However, the study of glomeruli in the clinic remains indirect through urine and blood tests. Recent imaging technique called Ultrasound Localization Microscopy (ULM) originated from the ability to record continuous movements of individual microbubbles in the bloodstream. Although it improved the resolution of vascular imaging up to tenfold, the imaging of the smallest vessels had yet to be reported.

We acquired ultrasound sequences from living humans and rats and then applied filtering dividing the data set into slow-moving and fast-moving microbubbles. We performed a double tracking to highlight and characterize this new population of microbubbles with singular behaviors: we called this technique “sensing ULM” (sULM). We used post-mortem micro-CT for side-by-side confirmation in rats.

In this study, we report the observation of microbubbles flowing in capillaries bundles, i.e. the glomeruli, in the kidney in living humans and rats. We introduce a set of analysis tools dedicated to extracting quantitative information from individual microbubbles, like the remanence time or the normalized distance.

As glomeruli play a key role in kidney function, their observation could yield a deeper understanding of kidney diseases and provide a diagnostic tool for patients. More generally, it will bring imaging capabilities closer to the functional units of organs, which is one of the keys to understanding most diseases, like cancers, diabetes, or kidney failures.   

Academic reference to be cited : Denis, Bodard, Hingot, Chavignon, Battaglia, Renault, Lager, Aissani, Hélénon, Correas, and Couture. Sensing Ultrasound Localization Microscopy reveals glomeruli in rats and humans, eBioMedicine, 2023.

Related scripts and software application : https://github.com/EngineerJB/akebia

(New ! published in June 2024) Raw data : https://zenodo.org/records/11395562

Corresponding authors : 



Article : Louise Denis, louise.denis@sorbonne-universite.fr, Sylvain Bodard, sylvain.bodard@aphp.fr

Scripts, and codes : Louise Denis, louise.denis@sorbonne-universite.fr, Jacques Battaglia, jacques.battaglia@sorbonne-universite.fr

Materials, collaborations, rights and others: Olivier Couture, olivier.couture@sorbonne-universite.fr
description: Additional information on the data is available at : https://github.com/EngineerJB/akebia

(New ! published in June 2024) Raw data : https://zenodo.org/records/11395562
DOI: 10.15468/dl.r94akn
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lilium lophophorum (Bureau & Franch.) Franch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 247 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264856-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6ccf6
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudojanira justi Serov & Wilson, 1999"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131287-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9qbcp
title: Occurrence Download

description: A dataset containing 328 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Richardia brasiliensis Gomes"
 ]
}

 The dataset includes 328 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117910-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bsykh9
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pontella mimocerami Fleminger, 1957"
 ]
}

 The dataset includes 25 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130761-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ptw9j5
title: Occurrence Download

description: A dataset containing 1070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex incisa Boott",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1070 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0192463-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74nrns
title: Occurrence Download

description: A dataset containing 4330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Country is one of (United States of America, Mexico, Canada)",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Sebastes entomelas (Jordan & Gilbert, 1880)"
 ]
}

 The dataset includes 4330 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048484-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrgf2m
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pontella polydactyla Fleminger, 1957"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130763-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.572epb
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macleaya microcarpa (Maxim.) Fedde",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 122 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264976-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ccbpq7
title: Occurrence Download

description: A dataset containing 3927 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cameroon",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, August, March, December)",
 "OccurrenceStatus is Present",
 "Year 2019-2019"
 ]
}

 The dataset includes 3927 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262429-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7nxz9
title: Occurrence Download

description: A dataset containing 3919133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year 2000-2022"
 ]
}

 The dataset includes 3919133 records from 2894 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131292-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chrpfv
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saussurea wardii Anthony",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0321317-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znsidr
title: Occurrence Download

description: A dataset containing 2172 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Lutjanus fulviflamma (Forsskål, 1775)"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2172 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014476-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ae2c8r
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bats of Vanuatu, Vanuatu Environmental Science Society"
 ]
}

 The dataset's 4 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219168-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jrxvu5
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0309146-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92bzmz
title: Occurrence Download

description: A dataset containing 1670 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 {
 "and" : [
 "GadmGid is one of (USA.36.58_1)",
 "TaxonKey is one of (Aves)",
 "OccurrenceStatus is one of (Present)",
 "Year 2016-2021",
 "BasisOfRecord is one of (Human Observation)",
 "Issue is one of (Coordinate rounded)"
 ]
 }
 ]
}

 The dataset includes 1670 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043978-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8zmqb
title: Occurrence Download

description: A dataset containing 781 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Toxostoma ocellatum (P.L.Sclater, 1862)"
 ]
}

 The dataset includes 781 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009457-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5mnxiq
title: Occurrence Download

description: A dataset containing 4811 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Nyctomys Saussure, 1860"
 ]
}

 The dataset includes 4811 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005434-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfvbtt
title: Occurrence Download

description: A dataset containing 2047 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lontra longicaudis (Olfers, 1818)"
 ]
}

 The dataset includes 2047 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228595-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5j7ef
title: Occurrence Download

description: A dataset containing 1024 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2024",
 "Geometry POLYGON ((-130.7383528944533 -59.46314024951374, -130.7383528944533 32.71876227804215, -26.26729810228821 32.71876227804215, -26.26729810228821 -59.46314024951374, -130.7383528944533 -59.46314024951374))",
 "OccurrenceStatus is Present",
 "TaxonKey is Grallaria kaestneri F.G.Stiles, 1992"
 ]
}

 The dataset includes 1024 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051280-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4q4e2x
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Amorpha californica Nutt.",
 "Year 2000-2010"
 ]
}

 The dataset includes 99 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044141-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kswusj
title: Occurrence Download

description: A dataset containing 607 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is King penguin census data, Gadget Gully, Macquarie Island (1993-2008)"
 ]
}

 The dataset includes 607 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009457-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rsr68z
title: Occurrence Download

description: A dataset containing 1235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Forsterygion varium (Forster, 1801))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1235 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051278-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2bqxz
title: Occurrence Download

description: A dataset containing 58586 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "Country is Spain",
 "Geometry POLYGON((-17.98386 33.55411,10.15350 33.55411,10.15350 44.80411,-17.98386 44.80411,-17.98386 33.55411))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus sylvestris L."
 ]
}

 The dataset includes 58586 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262613-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.