cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7860002
title: source data - Bridging the gap between transition metal- and bio-catalysis via aqueous micellar catalysis.xlsx

description: The data associated to the document entitled “Bridging the gap between transition metal- and bio-catalysis via aqueous micellar catalysis”, published in Nature Communications, are available in this Excel chart. This document combined, in a unique chart, all the data collected during this study.
DOI: 10.6084/m9.figshare.7859993
title: 3469-CRF_Microbiome.zip

description: Microbiome sequencing data
DOI: 10.6084/m9.figshare.7859993.v1
title: 3469-CRF_Microbiome.zip

description: Microbiome sequencing data
DOI: 10.6084/m9.figshare.7859978
title: Central Valley Wintertime Climate Averages

description: Annual and monthly averages for precipitation, dew point, dew point depression (DPD), sea level pressure (SLP), average temperature, max temperature (tmax), minimum temperature (tmin), visibility, wind speed, and NOx concentration. Data looks at fog season averages for variables, eg November-March. 'FogData' files includes number of fog days per year (days where visibility &lt; .25 miles for 1 hour) and fog hours per year (hours where visibility &lt; .25 miles). <br>Daily averages were derived from hourly measurements. An daily measurements for all continuous variables were created by averaging measurements taken every 3 hours (0:00, 3:00, 6:00, 9:00, 12:00, 15:00, 18:00, 21:00). 7 of 8 hourly observations were required to calculate daily average. <br><br>Each variable also includes a percent of measurements available for the month and year in a separate file. 65% of daily averages needed to be available in a month to determine a monthly average. All 5 months reported a monthly average in order to create a yearly average. <br>Fog days and fog hours are episodic, thus 90% of hourly observations needed to be available to create an average. <br>Sources:https://www7.ncdc.noaa.gov/CDO/cdoselect.cmdhttps://www.ncdc.noaa.gov/cdo-web/datatools/lcd.https://www.epa.gov/air-emissions-inventories/air-pollutant-emissions-trends-data https://www.arb.ca.gov/adam/<br><br>
DOI: 10.6084/m9.figshare.7860002.v1
title: source data - Bridging the gap between transition metal- and bio-catalysis via aqueous micellar catalysis.xlsx

description: The data associated to the document entitled “Bridging the gap between transition metal- and bio-catalysis via aqueous micellar catalysis”, published in Nature Communications, are available in this Excel chart. This document combined, in a unique chart, all the data collected during this study.
DOI: 10.6084/m9.figshare.7859978.v1
title: Central Valley Wintertime Climate Averages

description: Annual and monthly averages for precipitation, dew point, dew point depression (DPD), sea level pressure (SLP), average temperature, max temperature (tmax), minimum temperature (tmin), visibility, wind speed, and NOx concentration. Data looks at fog season averages for variables, eg November-March. 'FogData' files includes number of fog days per year (days where visibility &lt; .25 miles for 1 hour) and fog hours per year (hours where visibility &lt; .25 miles). <br>Daily averages were derived from hourly measurements. An daily measurements for all continuous variables were created by averaging measurements taken every 3 hours (0:00, 3:00, 6:00, 9:00, 12:00, 15:00, 18:00, 21:00). 7 of 8 hourly observations were required to calculate daily average. <br><br>Each variable also includes a percent of measurements available for the month and year in a separate file. 65% of daily averages needed to be available in a month to determine a monthly average. All 5 months reported a monthly average in order to create a yearly average. <br>Fog days and fog hours are episodic, thus 90% of hourly observations needed to be available to create an average. <br>Sources:https://www7.ncdc.noaa.gov/CDO/cdoselect.cmdhttps://www.ncdc.noaa.gov/cdo-web/datatools/lcd.https://www.epa.gov/air-emissions-inventories/air-pollutant-emissions-trends-data https://www.arb.ca.gov/adam/<br><br>
DOI: 10.6084/m9.figshare.7859948
title: 574536282.858611.jpg

description: Foto1
DOI: 10.6084/m9.figshare.7859948.v1
title: 574536282.858611.jpg

description: Foto1
DOI: 10.6084/m9.figshare.7859906
title: Indeks Partisipasi Masyarakat

description: This data set aims to measure quality of citizens' participation in local development. The data was collected by face to face interviewed with 431 respondent in Kutai Kartanegara Regency in June-July 2017.
DOI: 10.6084/m9.figshare.7859906.v2
title: Indeks Partisipasi Masyarakat

description: This data set aims to measure quality of citizens' participation in local development. The data was collected by face to face interviewed with 431 respondent in Kutai Kartanegara Regency in June-July 2017.
DOI: 10.6084/m9.figshare.7859906.v1
title: Indeks Partisipasi Masyarakat

description: This data set aims to measure quality of citizens' participation in local development. The data was collected by face to face interviewed with 431 respondent in Kutai Kartanegara Regency in June-July 2017.
DOI: 10.6084/m9.figshare.7859828
title: Bio-Pixels: 2nd phase (code source)

description: This is the source of the project's code.
DOI: 10.6084/m9.figshare.7859801
title: Additional file 1 – Enzyme activity assay excel template

description: p { margin-bottom: 0.25cm; direction: ltr; line-height: 115%; text-align: left; }p.western { font-size: 11pt; }p.cjk { font-size: 11pt; }a:link { color: rgb(0, 0, 255); } The file contains a blank layout sheet for test sample and control sample distribution on a 96-well plate. Additional sheets contain master mix volume calculations for activity assays for Aldolase, Glucose-6-phosphate Dehydrogenase, Hexokinase, Phosphofructokinase, Phosphoglucose isomerase, and Phosphoglucosemutase. Adjustment of the desired number of control and test samples (grey fields) results in recalculation of required volumes. All sheets are printable on A4 paper and can be filled out digitally or manually.
DOI: 10.6084/m9.figshare.7859684
title: trackr: A Framework for Enhancing Discoverability and Reproducibility of Data Visualizations and Other Artifacts in R

description: Research is an incremental, iterative process, with new results relying and building upon previous ones. Scientists need to find, retrieve, understand, and verify results to confidently extend them, even when the results are their own. We present the trackr framework for organizing, automatically annotating, discovering, and retrieving results. We identify sources of automatically extractable metadata for computational results, and we define an extensible system for organizing, annotating, and searching for results based on these and other metadata. We present an open-source implementation of these concepts for plots, computational artifacts, and woven dynamic reports generated in the R statistical computing language. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.7859747
title: Quality assessment of papers found in systematic literature review about machine vision in the context of robotics. It contians the list and details of all papers that we found through our systematic literature study

description: our literature review is based on assessment of quality of research papers which are found about machine vision and robotics<br>
DOI: 10.25345/c5nb30
title: MassIVE MSV000086030 - 2_HILIC LC_MS_MS of infant fecal samples and breast milk samples for analysis of HMOs_v1
title: Sillner et al. : Longitudinal profiles of dietary and microbial metabolites in formula- and breastfed infants - https://doi.org/10.1101/2020.05.11.086546 HILIC LC-MS/MS data of infant fecal samples and breast milk samples for generating human milk oligosaccharides data, presented in Figure 2D.
DOI: 10.6084/m9.figshare.7859684.v1
title: trackr: A Framework for Enhancing Discoverability and Reproducibility of Data Visualizations and Other Artifacts in R

description: Research is an incremental, iterative process, with new results relying and building upon previous ones. Scientists need to find, retrieve, understand, and verify results to confidently extend them, even when the results are their own. We present the trackr framework for organizing, automatically annotating, discovering, and retrieving results. We identify sources of automatically extractable metadata for computational results, and we define an extensible system for organizing, annotating, and searching for results based on these and other metadata. We present an open-source implementation of these concepts for plots, computational artifacts, and woven dynamic reports generated in the R statistical computing language. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.7859675
title: Understory Diversity Complete Dataset

description: This is a compilation of understory community and environmental data collected using the USFS Common Stand Exam protocol.
DOI: 10.6084/m9.figshare.7859747.v2
title: Quality assessment of papers found in systematic literature review about machine vision in the context of robotics. It contians the list and details of all papers that we found through our systematic literature study

description: our literature review is based on assessment of quality of research papers which are found about machine vision and robotics<br>
DOI: 10.6084/m9.figshare.7859675.v1
title: Understory Diversity Complete Dataset

description: This is a compilation of understory community and environmental data collected using the USFS Common Stand Exam protocol.
DOI: 10.6084/m9.figshare.7859747.v1
title: Quality assessment of papers found in systematic literature review about machine vision in the context of robotics

description: our literature review is based on assessment of quality of research papers which are found about machine vision and robotics<br>
DOI: 10.6084/m9.figshare.7859750.v1
title: Incremental Mixture Importance Sampling with Shotgun optimization

description: This paper proposes a general optimization strategy, which combines results from different optimization or parameter estimation methods to overcome shortcomings of a single method. Shotgun optimization is developed as a framework which employs different optimization strategies, criteria, or conditional targets to enable wider likelihood exploration. The introduced Shotgun optimization approach is embedded into an incremental mixture importance sampling algorithm to produce improved posterior samples for multimodal densities and creates robustness in cases where the likelihood and prior are in disagreement. Despite using different optimization approaches, the samples are combined into samples from a single target posterior. The diversity of the framework is demonstrated on parameter estimation from differential equation models employing diverse strategies including numerical solutions and approximations thereof. Additionally the approach is demonstrated on mixtures of discrete and continuous parameters and is shown to ease estimation from synthetic likelihood models. R code of the implemented examples can be found at https://github.com/BiljanaJSJ/IMIS-ShOpt.
DOI: 10.6084/m9.figshare.7859552
title: Untitled Item

description: Data and R script from "Individual variation in boldness in turtles is consistent across assay conditions and behavioral measures" by Pich, Belden, and Carlson.<br>
DOI: 10.6084/m9.figshare.7859459
title: Desk Review, KIIs and Indicators for Male Engagement in FP.docx

description: These files contain information related to male engagement in family planning. There are transcripts of interviews with nine key informants about their experiences monitoring and evaluating programs and interventions related to male engagement in family planning, a list of publications from our literature review, and indicators related to male engagement in family planning that we identified from our data collection.
DOI: 10.6084/m9.figshare.7859534
title: CESM-CAM4 model simulations

description: Climate model simulations with stratospheric nudging towards different stratospheric polar vortex states in the Southern Hemisphere, as described in the Geophysical Research Letters paper titled "The role of the stratospheric polar vortex for the austral jet response to greenhouse gas forcing".<br>The climate model is CESM version 1.2.2 with the atmospheric component CAM4. We use a high-top version of the model with 46 vertical levels. The native horizontal model resolution is 1.9 x 2.5 degrees (lat x lon).<br>The data are interpolated to a global T42 Gaussian grid on 17 standard pressure levels. <br>There are three experiments: BASE, EARLY and LATE, described in the paper. For each experiment there are two files:_month.nc contains monthly zonal-mean values of temperature (T) and zonal wind (U); _day.nc contains daily zonal-mean values of U at 50 hPa.
DOI: 10.6084/m9.figshare.7859552.v1
title: Untitled Item

description: Data and R script from "Individual variation in boldness in turtles is consistent across assay conditions and behavioral measures" by Pich, Belden, and Carlson.<br>
DOI: 10.6084/m9.figshare.7859459.v2
title: Desk Review, KIIs and Indicators for Male Engagement in FP.docx

description: These files contain information related to male engagement in family planning. There are transcripts of interviews with nine key informants about their experiences monitoring and evaluating programs and interventions related to male engagement in family planning, a list of publications from our literature review, and indicators related to male engagement in family planning that we identified from our data collection.
DOI: 10.6084/m9.figshare.7859459.v1
title: Desk Review, KIIs and Indicators for Male Engagement in FP.docx

description: These files contain information related to male engagement in family planning. There are transcripts of interviews with nine key informants about their experiences monitoring and evaluating programs and interventions related to male engagement in family planning, a list of publications from our literature review, and indicators related to male engagement in family planning that we identified from our data collection.
DOI: 10.6084/m9.figshare.7859534.v2
title: CESM-CAM4 model simulations

description: Climate model simulations with stratospheric nudging towards different stratospheric polar vortex states in the Southern Hemisphere, as described in the Geophysical Research Letters paper titled "The role of the stratospheric polar vortex for the austral jet response to greenhouse gas forcing".<br>The climate model is CESM version 1.2.2 with the atmospheric component CAM4. We use a high-top version of the model with 46 vertical levels. The native horizontal model resolution is 1.9 x 2.5 degrees (lat x lon).<br>The data are interpolated to a global T42 Gaussian grid on 17 standard pressure levels. <br>There are three experiments: BASE, EARLY and LATE, described in the paper. For each experiment there are two files:_month.nc contains monthly zonal-mean values of temperature (T) and zonal wind (U); _day.nc contains daily zonal-mean values of U at 50 hPa.
DOI: 10.6084/m9.figshare.7857869
title: Mus musculus CBA/J CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus CBA/J</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7858226
title: Gauge observations.xlsx

description: Gauge observations
DOI: 10.6084/m9.figshare.7859534.v1
title: CESM-CAM4 model simulations

description: Climate model simulations with stratospheric nudging towards different stratospheric polar vortex states in the Southern Hemisphere, as described in the Geophysical Research Letters paper titled "The role of the stratospheric polar vortex for the austral jet response to greenhouse gas forcing".<br>The climate model is CESM version 1.2.2 with the atmospheric component CAM4. We use a high-top version of the model with 46 vertical levels. The native horizontal model resolution is 1.9 x 2.5 degrees (lat x lon).<br>The data are interpolated to a global T42 Gaussian grid on 17 standard pressure levels. The files contain monthly climatologies derived from 100-year simulations.<br>There are three NetCDF files, corresponding to three experiments: BASE, EARLY and LATE, described in the paper.
DOI: 10.6084/m9.figshare.7857860
title: Mus musculus C57BL/6NJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus C57BL/6NJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857863
title: Mus musculus CAST/EiJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus CAST/EiJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857869.v1
title: Mus musculus CBA/J CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus CBA/J</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857857
title: Mus musculus C3H/HeJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus C3H/HeJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857860.v1
title: Mus musculus C57BL/6NJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus C57BL/6NJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857842
title: Mus musculus BALB/cJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus BALB/cJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857863.v1
title: Mus musculus CAST/EiJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus CAST/EiJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857839
title: Mus musculus WSB/EiJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for<i> Mus musculus WSB/EiJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857842.v1
title: Mus musculus BALB/cJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus BALB/cJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857830
title: Mus musculus NZO/HlLtJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus NZO/HlLtJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.<br><br>
DOI: 10.6084/m9.figshare.7857836
title: Mus musculus PWK/PhJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus PWK/PhJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857818
title: Mus musculus FVB/NJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus FVB/NJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857821
title: Mus musculus DBA/2J CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus DBA/2J</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857824
title: Mus musculus NOD/ShiLtJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus NOD/ShiLtJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857827
title: Mus musculus LP/J CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus LP/J</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857818.v1
title: Mus musculus FVB/NJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus FVB/NJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857824.v1
title: Mus musculus NOD/ShiLtJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus NOD/ShiLtJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857827.v1
title: Mus musculus LP/J CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus LP/J</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857821.v1
title: Mus musculus DBA/2J CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus DBA/2J</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857788
title: Mus musculus 129S1/SvImJ CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus 129S1/SvImJ</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.6084/m9.figshare.7857791
title: Mus musculus A/J CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for <i>Mus musculus A/J</i>. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.