cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dfn2z354d
title: Does perception of female cues modulate male short-term fitness components in Drosophila melanogaster?

description: Phenotypic plasticity in reproductive behaviour can be a strong driver of
 individual fitness. In species with high intra-sexual competition, changes
 in socio-sexual context can trigger quick adaptive plastic responses in
 males. In particular, a recent study in the vinegar fly (Drosophila
 melanogaster) shows that males derive net fitness benefits from being
 shortly exposed to female cues ahead of access to mating
 (termed sexual perception), but the underlying mechanisms of this
 phenomenon remain unknown. Here, we investigated the short-term effects of
 female perception on male pre- and post-copulatory components of
 reproductive performance: a) mating success, b) mating latency and
 duration, c) sperm competitiveness, and d) ejaculate effects on female
 receptivity and oviposition rate. We found that brief sexual perception
 increased mating duration, but had no effect on the main pre- or
 post-copulatory fitness proxies recorded. This may suggest that male
 fitness benefits from responses to sexual perception do not play out in
 the short-term, but we discuss alternative explanations and future avenues
 of research.
DOI: 10.5061/dryad.m0cfxpp5x
title: Pest population dynamics are related to a continental overwintering gradient

description: Overwintering success is an important determinant of arthropod populations
 that must be considered as climate change continues to influence the
 spatiotemporal population dynamics of agricultural pests. Using a
 long-term monitoring database and biologically relevant overwintering
 zones, we modeled the annual and seasonal population dynamics of a common
 pest, Helicoverpa zea (Boddie), based on three overwintering suitability
 zones throughout North America using four decades of soil temperatures:
 the southern range (able to persist through winter), transitional zone
 (uncertain overwintering survivorship), and northern limits (unable to
 survive winter). Our model indicates H. zea population dynamics are
 hierarchically structured with continental-level effects that are
 partitioned into three geographic zones. Seasonal populations were
 initially detected in the southern range, where they experienced multiple
 large population peaks. All three zones experienced a final peak between
 late July (southern range) and mid-August to mid-September (transitional
 zone and northern limits). The southern range expanded by 3% since 1981
 and is projected to increase by twofold by 2099 but the areas of other
 zones are expected to decrease in the future. These changes suggest larger
 populations may persist at higher latitudes in the future due to reduced
 low-temperature lethal events during winter. Because H. zea is a highly
 migratory pest, predicting when populations accumulate in one region can
 inform synchronous or lagged population development in other regions. We
 show the value of combining long-term datasets, remotely sensed data, and
 laboratory findings to inform forecasting of insect pests.
DOI: 10.5281/zenodo.15479759
title: Reverse glycosylation kinetics of GT1s / UGTs

description: The dataset contains kinetics data on reverse glycosylation of UGT / GT1 enzymes
DOI: 10.5281/zenodo.15479798
title: Reverse glycosylation kinetics of GT1s / UGTs

description: The dataset contains kinetics data on reverse glycosylation of UGT / GT1 enzymes
DOI: 10.5061/dryad.jq2bvq8bq
title: Seasonality modulates habitat cover effects on avian cross-boundary responses and spillover

description: Species cross-boundary response is a key mechanism affecting species
 spillover into agricultural fields. However, temporal changes in edge
 permeability, which may depend on the seasonal availability of resources
 in both matrix and native habitats, remain poorly understood. Here we
 tested how edge crossing behavior and the associated spillover of birds
 into sun coffee plantations respond to landscape structure and
 seasonality. We monitored the movement of six insectivorous understory
 bird species (four forest-specialists and two forest-generalists) using an
 automated telemetry system along a gradient of forest cover (7-60%) during
 two seasons (dry vs. wet) at nine sampling sites at the Brazilian Atlantic
 forest. We monitored 116 individuals and obtained a total of 15,129 bird
 detections across seasons. Bird resistance to crossing edges was strongly
 driven by an interaction between seasonality and forest cover in the
 surrounding landscape, with higher resistance to crossing edges along the
 dry season and in landscapes with lower amount of forest cover.
 Furthermore, spillover patterns in plantations were driven by an
 interaction between forest cover and distance from forest edges, but this
 was most pronounced for forest-specialist bird species. Forest-specialists
 moved more intensively and farther from edges in more forested landscapes,
 whereas forest-generalists showed similar patterns of occupation
 regardless of forest cover and isolation. Our study contributes to a
 better understanding of avian cross-boundary responses and spillover in
 response to landscape structure across seasons and the factors driving
 bird movement decisions in anthropogenic landscapes. There are a myriad of
 possible mechanisms governing movement decisions, and these mechanisms may
 interact in complex ways and remain important foci for research within
 fields of tropical ecology and evolution in the tropics.
description: The data upload here encompasses the data regarding 1) the number
 of detections of each marked individual across automated receptors
 (DetectionsAcross_AutomatedReceptors.xls), and 2) the Edge Resistance
 Index calculated for each species (EdgeResistanceIndex.xls). Details
 regarding data collection is in the session 'Material &
 Methods' in the manuscript. The coordinates of the individual
 receptors can be made available upon reasonable request. Please, send an
 email to Andrea Larissa Boesing (lari.boesing@gmail.com) in case you want access the geolocations. 
description: All analyses were performed in R studio.
DOI: 10.5061/dryad.tdz08kq27
title: Data from: A trait‒environment relationship approach to participatory plant breeding for organic agriculture

description: The extent of intraspecific variation in trait‒environment relationships
 is an open question with limited empirical support in crops. In organic
 agriculture, with high environmental heterogeneity, this knowledge could
 guide breeding programs to optimize crop attributes. We propose a
 three-dimensional framework involving crop performance, crop traits, and
 environmental axes to uncover the multidimensionality of trait‒environment
 relationships within a crop.  We modeled instantaneous
 photosynthesis (Asat) and water-use efficiency (WUE) as functions of four
 phenotypic traits, three soil variables, five carrot (D. carota)
 varieties, and their interactions in a national participatory plant
 breeding program involving a suite of farms across Canada. We used these
 interactions to describe the resulting 12 trait‒environment relationships
 across varieties.   We found one significant
 trait‒environment relationship for Asat (taproot tissue
 density‒soil phosphorus), which was consistent across varieties. For WUE,
 we found that three relationships (petiole diameter‒soil nitrogen, petiole
 diameter‒soil phosphorus, and leaf area‒soil phosphorus) varied
 significantly across varieties. As a result, WUE was maximized by
 different combinations of trait values and soil conditions depending on
 the variety.   Our three-dimensional framework supports
 the identification of functional traits behind the differential responses
 of crop varieties to environmental variation and thus guides breeding
 programs to optimize crop attributes from an eco-evolutionary
 perspective. 
description: We modeled instantaneous photosynthesis
 (<em>A</em><sub>sat</sub>) and water-use
 efficiency (WUE) as functions of four phenotypic traits, three soil
 variables, five carrot (<em>D. carota</em>) varieties, and
 their interactions in a national participatory plant breeding program
 involving a suite of farms across Canada. We used these interactions to
 describe the resulting 12 trait‒environment relationships across
 varieties.  
description: The experimental design resulted in 405 carrot plants sampled in
 a nested design with the following structure: 9 farms, 5 plots within each
 farm (i.e. one for each variety), 3 subplots within each plot, and 3
 individual plants within each subplot. However, given the logistics of our
 field campaign, five physiological measurements were not possible within
 the optimal measurement timeframe. We therefore excluded these five plants
 from our dataset (representing ~1% of the total sample size). After
 transformation and standardization (see text), we identified and removed 2
 outliers (extremely high leaf area values), leading to a total of 398
 sampling units (plants) for subsequent analyses. The dataset presented
 here contains information for these 398 sampling units and will be
 sufficient for reproducing the results in the corresponding article. A key
 explaining the name and units of each variable is included in the
 file.
DOI: 10.5061/dryad.tx95x6b0x
title: Supplemental material for: The estrogen receptor α cistrome in human endometrium and epithelial organoids

description: Endometrial health is impacted by molecular processes that underlie
 estrogen responses. We assessed estrogen regulation of endometrial
 function by integrating the estrogen receptor alpha (ESR1) cistromes and
 transcriptomes of endometrial biopsies taken from the proliferative and
 mid-secretory phases of the menstrual cycle together with hormonally
 stimulated endometrial epithelial organoids. The cycle stage specific ESR1
 binding sites were determined by ChIPseq and then integrated with changes
 in gene expression from RNAseq data to infer candidate ESR1 targets in
 normal endometrium. Genes with ESR1 binding in whole endometrium were
 enriched for chromatin modification and regulation of cell proliferation.
 The distribution of ESR1 binding sites in organoids was more distal from
 gene promoters when compared to primary endometrium and was more similar
 to the proliferative than the mid-secretory phase ESR1 cistrome. Inferred
 organoid estrogen/ESR1 candidate target genes impacted formation of
 cellular protrusions, and chromatin modification. Comparison of signaling
 impacted by candidate ESR1 target genes in endometrium vs. organoids
 reveals enrichment of both overlapping and distinct responses. Our
 analysis of the ESR1 cistromes and transcriptomes from endometrium and
 organoids provides important resources for understanding how estrogen
 impacts endometrial health and function.
DOI: 10.26165/juelich-data/jk7jgt
title: Comparison of Scenario Factsheets from the Open Energy Platform

description: Veröffentlichung als Datensatz in Form einer Comparison im Open Research Knowledge Graph
DOI: 10.5281/zenodo.18388301
title: Datos de estudio longitudinal de primeros episodios psicóticos de pacientes del Hospital Clínico Universitario de Valencia
title: Longitudinal study data on first psychotic episodes in patients from the University Clinical Hospital of Valencia

description: Data related to a longitudinal follow-up project conducted from 2010 to 2025. Demographic, clinical, cognitive, and biological data (neuroimaging and genetics) were collected, including baseline and follow-up assessments, from 67 adult participants, 52 patients with first-episode psychosis (FEP) and 15 controls. The sample is part of the national CIBERSAM cohort (CoPEP Cohort). The genetic data folder also includes data from participants of the First-Episode Psychosis Unit (UPEP) of the Valencia Clinical Hospital.

The dataset includes results from the SCID, PANSS, GAF, and CGI scales; substance use habits; family psychiatric history; pharmacological treatment and response; childhood trauma; premorbid stage; as well as expression analyses of candidate genes in schizophrenia and functional and structural magnetic resonance imaging, DTI, and resting-state studies.

***

Datos relativos a proyecto de seguimiento longitudinal desde 2010 hasta 2025. Se han recogido datos demográficos, clínicos, cognitivos y biológicos (neuroimagen y genéticos), con evaluaciones basales y de seguimiento, de 67 participantes mayores de edad, 52 pacientes con primeros episodios psicóticos (PEP) y 15 controles. La muestra forma parte de la cohorte nacional del CIBERSAM (Cohorte CoPEP). En la carpeta de datos genéticos se incluyen, además, datos de participantes de la Unidad de Primeros Episodios Psicóticos (UPEP) del Hospital Clínico de Valencia.Se incluyen resultados de escalas SCID, PANSS, GAF, CGI, hábitos tóxicos, antecedentes psiquiátricos familiares, tratamiento farmacológico y respuesta, trauma infantil, etapa premórbida, además de análisis de expresión de genes candidatos en esquizofrenia y resonancias magnéticas funcionales y estructurales, DTI y resting-state.
DOI: 10.5281/zenodo.18388302
title: Datos de estudio longitudinal de primeros episodios psicóticos de pacientes del Hospital Clínico Universitario de Valencia
title: Longitudinal study data on first psychotic episodes in patients from the University Clinical Hospital of Valencia

description: Data related to a longitudinal follow-up project conducted from 2010 to 2025. Demographic, clinical, cognitive, and biological data (neuroimaging and genetics) were collected, including baseline and follow-up assessments, from 67 adult participants, 52 patients with first-episode psychosis (FEP) and 15 controls. The sample is part of the national CIBERSAM cohort (CoPEP Cohort). The genetic data folder also includes data from participants of the First-Episode Psychosis Unit (UPEP) of the Valencia Clinical Hospital.

The dataset includes results from the SCID, PANSS, GAF, and CGI scales; substance use habits; family psychiatric history; pharmacological treatment and response; childhood trauma; premorbid stage; as well as expression analyses of candidate genes in schizophrenia and functional and structural magnetic resonance imaging, DTI, and resting-state studies.

***

Datos relativos a proyecto de seguimiento longitudinal desde 2010 hasta 2025. Se han recogido datos demográficos, clínicos, cognitivos y biológicos (neuroimagen y genéticos), con evaluaciones basales y de seguimiento, de 67 participantes mayores de edad, 52 pacientes con primeros episodios psicóticos (PEP) y 15 controles. La muestra forma parte de la cohorte nacional del CIBERSAM (Cohorte CoPEP). En la carpeta de datos genéticos se incluyen, además, datos de participantes de la Unidad de Primeros Episodios Psicóticos (UPEP) del Hospital Clínico de Valencia.Se incluyen resultados de escalas SCID, PANSS, GAF, CGI, hábitos tóxicos, antecedentes psiquiátricos familiares, tratamiento farmacológico y respuesta, trauma infantil, etapa premórbida, además de análisis de expresión de genes candidatos en esquizofrenia y resonancias magnéticas funcionales y estructurales, DTI y resting-state.
DOI: 10.6078/d18h9b
title: Data from: We get by with a little help from our friends: shared adaptive variation provides a bridge to novel ecological specialists during adaptive radiation

description: Adaptive radiations involve astounding bursts of phenotypic, ecological,
 and species diversity. However, the microevolutionary processes that
 underlie the origins of these bursts are still poorly understood. We
 report the discovery of an intermediate ‘wide-mouth’ scale-eating ecomorph
 in a sympatric radiation of Cyprinodon pupfishes,
 illuminating the transition from a widespread algae-eating generalist to a
 novel microendemic scale-eating specialist. We first show that this
 ecomorph occurs in sympatry with generalist C.
 variegatus and scale-eating specialist C.
 desquamator on San Salvador Island, Bahamas, but is genetically
 differentiated, morphologically distinct, and often consumes
 scales. We then compared the timing of selective sweeps on shared
 and unique adaptive variants in trophic specialists to
 characterize their adaptive walk. Shared adaptive regions swept
 first in both the specialist desquamator and the
 intermediate ‘wide-mouth’ ecomorph, followed by unique sweeps of
 introgressed variation in ‘wide-mouth’ and de novo variation
 in desquamator. The two scale-eating populations additionally
 shared 9% of their hard selective sweeps with molluscivores C.
 brontotheroides, despite no single common ancestor among
 specialists. Our work provides a new microevolutionary framework
 for investigating how major ecological transitions occur
 and illustrates how both shared and unique genetic variation can provide a bridge for multiple species to access novel ecological niches.
DOI: 10.5061/dryad.tmpg4f519
title: Male song stability shows cross-year repeatability but does not affect reproductive success in a wild passerine bird

description: Predictable behaviour (or “behavioural stability”) might be favoured in
 certain ecological contexts, e.g. when representing a quality signal.
 Costs associated with producing stable phenotypes imply selection should
 favour plasticity in stability when beneficial. Repeatable
 among-individual differences in degree of stability are simultaneously
 expected if individuals differ in ability to pay these costs, or in how
 they resolve cost-benefit trade-offs. Bird song represents a prime
 example, where stability may be costly yet beneficial when stable singing
 is a quality signal favoured by sexual selection. Assuming energetic
 costs, ecological variation (e.g. in food availability) should result in
 both within- and among-individual variation in stability. If song
 stability represents a quality signal, we expect directional selection
 favouring stable singers. For a three-year period, we monitored 12 nest
 box plots of great tits Parus major during breeding. We recorded male
 songs during simulated territory intrusions, twice during their mate’s
 laying stage, and twice during incubation. Each preceding winter, we
 manipulated food availability. Assuming that stability is costly, we
 expected food-supplemented males to sing more stable songs. We also
 expected males to sing more stable songs early in the breeding season
 (when paternity is not decided), and stable singers to have increased
 reproductive success. We found strong support for plasticity in stability
 for two key song characteristics: minimum frequency and phrase length.
 Males were plastic because they became more stable over the season,
 contrary to expectations. Food-supplementation did not affect body
 condition but increased stability in minimum frequency. This treatment
 effect occurred only in one year, implying that food supplementation
 affected stability only in interaction with (unknown) year-specific
 ecological factors. We found no support for directional, correlational, or
 fluctuating selection on the stability in minimum frequency (i.e., the
 song trait whose stability exhibited cross-year repeatability): stable
 singers did not have higher reproductive success. Our findings imply that
 stability in minimum frequency is not a fitness quality indicator unless
 males enjoy fitness benefits via pathways not studied here. Future studies
 should thus address the mechanisms shaping and maintaining individual
 repeatability of song stability in the wild.
DOI: 10.5061/dryad.cc2fqz68b
title: Impacts of development and adult sex on brain cell numbers in the Black Soldier Fly, Hermetia illucens L. (Diptera: Stratiomyidae)

description: The Black Soldier Fly (Hermetia illucens, Diptera: Stratiomyidae) has been
 introduced across the globe, with numerous industry applications
 predicated on its tremendous growth during the larval stage. However,
 basic research on H. illucens biology (for example, studies of their
 central nervous system) are lacking. Despite their small brain volumes,
 insects are capable of complex behaviors; understanding how these
 behaviors are completed with such a small amount of neural tissue requires
 understanding processing power (e.g. number of cells) within the brain.
 Brain cell counts have been completed in only a few insect species (mostly
 Hymenoptera), and almost exclusively in adults. This limits the taxonomic
 breadth of comparative analyses, as well as any conclusions about how
 development and body size growth may impact brain cell populations. Here,
 we present the first images and cell counts of the H. illucens brain at
 four time points across development (early, mid, and late larval stages,
 and both male and female adults) using immunohistochemistry and isotropic
 fractionation. To assess sexual dimorphism in adults, we quantified the
 number of cells in the central brain vs. optic lobes of males and females
 separately. To assess if increases in body size during development might
 independently affect different regions of the CNS, we quantified the
 larval ventral nerve cord and central brain separately at all three
 stages. Together, these data provide the first description of the nervous
 system of a popular, farmed invertebrate and the first study of brain cell
 numbers using IF across developmental stages in any insect.
DOI: 10.5061/dryad.rr4xgxdbf
title: Population genetic and geographic data of six Neotropical plant species

description: We examined population genetic structure and fine-scale spatial genetic
 structure (FSGS) in six perennial understory angiosperms in Andean cloud
 forests of northwestern Ecuador. Species belong to three families
 (Gesneriaceae, Melastomataceae, and Rubiaceae), and within each family we
 paired one insect-pollinated with one hummingbird-pollinated species,
 predicting that insect-pollinated species have greater population
 differentiation (as quantified with the FST statistic) and stronger FSGS
 (as quantified with the SP statistic) than hummingbird-pollinated species.
description: GPS coordinates of 30–42 individuals per species from
 2–3 sites in northwestern Ecuador were taken with a Garmin GPSMAP
 device. Genetic data is stored in fastq format and
 corresponds to quality filtered 2B-RAD sequencing reads (raw reads were
 generated at the BYU DNA Sequencing Center). These
 filtered reads were processed as described in the manuscript methods for
 estimating population genetic parameters in the 'de novo' Stacks
 v2.3e pipeline. The genepop file was used in GenoDive
 v3.0 to estimate population genetic structure parameters and the vcf file
 was used in the R program SNPRelate to produce the gds files and perform a
 PCA. The input files for SPAGeDi v. 1.3a are stored
 for each species in the corresponnding txt file, used for FSGS
 analyses. Db=Drymonia brochidodroma, Dt=Drymonia
 tenuis, Mt=Meriania tomentosa, Om=Miconia rubescens (for the synonym
 Ossaea micrantha), Nl=Notopleura longipedunculoides, Pd=Palicourea
 demissa.