cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1536773.v1
title: Survival for 38 years with Animal-type malignant melanoma

description: A 38-year-old female came with a dark pigmented nodular lesion on the left labium majus which was present since birth. Grossly, the lesion was uniformly black in colour<br>and measured 7x4.5x3 cm. Cut-sections showed dark pigmentation up to the level of subcutaneous fat. Microscopically, there was assymetrical proliferation of mildly atypical, polygonal tumor cells having moderate amount of heavily melanized cytoplasm in the dermis and subcutis (Clark level V). Maturation with descent was not present. Breslow thickness was 11mm. Invasion of hair follicles and subcutaneous fat was present. Intra and perineural invasion were also seen. Nucleoli were small. Animal-type malignant melanoma was the diagnosis. The patient was alive and otherwise healthy for 38 years because the tumor is low-grade malignant.
DOI: 10.6084/m9.figshare.1536774.v1
title: Clinico-pathologic profile of women with palpable breast lumps in Chitwan Medical College, Nepal

description: Background: Spectrum of female breast diseases is manifold and includes various non-neoplastic and neoplastic conditions. This study focused on the clinico-pathological profile of several breast diseases, including fibrocystic change, fibroadenoma and breast carcinoma.<br>Methods: This cross sectional analytic observational study included Fine Needle Aspiration Cytology cases of female breast diseases diagnosed over three years from 2011 to 2014 in Chitwan Medical College Teaching hospital in Central Nepal. Univariate analysis was carried out to find out age group-wise proportion of the diseases in relation to five cytologic categories and various cytomorphologic diagnoses. Independent samples t-test was used to find out the significance of difference between mean age of benign and malignant breast diseases.<br>Results: The proportion of benign, suspicious for malignancy and malignant breast diseases was 90.4 %, 0.8% and 8.8 % respectively. The mean age of patients at diagnosis for benign diseases and malignant disease was 31.7± 10.4 years and 49.2 ± 12.0 years respectively. t-test showed difference in mean age between benign and malignant diseases to be statistically significant (t=8.79, p= &lt;0.001). Fibrocystic change and fibroadenoma were the most common breast disease overall and the most common neoplasm respectively. 58.1 %, 25.9 % and 6.5 % of all carcinoma cases in this study were found below 50, below 40 and below 30 years of age respectively.<br>Conclusions: Fibrocystic change and fibroadenoma are most common disease of breast and most common neoplasm of breast respectively. Breast cancer occurs in younger women in Nepal in comparison to women in developed countries. Therefore, breast cancer prevention programs in Nepal should target young women also.<br>Keywords: Breast lump, Fibrocystic disease, Fibroadenoma, Breast cancer, Prevention, Nepal
DOI: 10.6084/m9.figshare.1536769
title: Comparison of 454 and PGM platforms

description: Files containing all raw sequences and mapping files from 454 and PGM platforms
DOI: 10.6084/m9.figshare.1536771.v1
title: comparison of 454 and PGM platforms

description: The raw data and mapping files for the two platforms
DOI: 10.6084/m9.figshare.1536772.v1
title: Association of Knowledge, Attitude and Demographic Variables with Cervical Pap Smear Practice in Nepal

description: Pap smear coverage in this research at 15.7% in Nepal is far lower than global average and even below the average for developing countries. It was observed that attitude was the only factor significantly associated with pap smear test uptake on multivariate binary logistic regression analysis. Thus, health education programs which are effective not only in increasing knowledge but also in bringing about positive change in attitude of women towards pap smear test should be organized to increase pap smear coverage in Nepal.
DOI: 10.6084/m9.figshare.1536762
title: Emotional health

description: Responses to the emotional health domain of the Dutch ICF Activity Inventory by participants with Retinitis Pigmentosa.
DOI: 10.6084/m9.figshare.1536708
title: Does chemical defence increase niche space - a phylogenetic comparative analysis of the Musteloidea

description: Data and phylogeny used in the following paper: Arbuckle et al. 2013. Does chemical defence increase niche space? A phylogenetic comparative analysis of the Musteloidea. Evolutionary Ecology 27:863 - 881
DOI: 10.6084/m9.figshare.1536717
title: Coarse root data from: Soil organic carbon and root distribution in a temperate arable agroforestry system

description: Data described at: https://github.com/maupson/research_data/tree/master/silsoe/silsoe_coarse_root_agg
DOI: 10.6084/m9.figshare.1536770.v2
title: Coarse root data from the Silsoe silvoarable trial site

description: Data described at: https://github.com/maupson/research_data/tree/master/silsoe/silsoe_coarse_root_raw
DOI: 10.6084/m9.figshare.1536762.v1
title: Emotional health

description: Responses to the emotional health domain of the Dutch ICF Activity Inventory by participants with Retinitis Pigmentosa.
DOI: 10.6084/m9.figshare.1536769.v2
title: Comparison of 454 and PGM platforms

description: Files containing all raw sequences and mapping files from 454 and PGM platforms
DOI: 10.6084/m9.figshare.1536769.v1
title: comparsion of 454 and PGM platforms

description: Files containing all raw sequences and mapping files from 454 and PGM platforms
DOI: 10.6084/m9.figshare.1536770.v1
title: Coarse root data from the Silsoe silvoarable trial site

description: Data described at: https://github.com/maupson/research_data/tree/master/silsoe/silsoe_coarse_root_raw
DOI: 10.6084/m9.figshare.1536703
title: Comparison of 454 and PGM platforms

description: Raw data from sequence from 454 platfrom
DOI: 10.6084/m9.figshare.1536704
title: Comparison of 454 and PGM platforms

description: raw data sequence from PGM platform
DOI: 10.6084/m9.figshare.1536707
title: Społecznościowe katalogowanie książek w serwisie LubimyCzytać

description: Dane badawcze uzyskane za pomocą techniki Web Scraping z interfejsu serwisu Lubimy Czytać. Elementy metadanych 120 najpopularniejszych książek
DOI: 10.6084/m9.figshare.1536717.v2
title: Coarse root data from: Soil organic carbon and root distribution in a temperate arable agroforestry system

description: Data described at: https://github.com/maupson/research_data/tree/master/silsoe/silsoe_coarse_root_agg
DOI: 10.6084/m9.figshare.1536702
title: Comparison of 454 and PGM platforms

description: Mapping file for 454 sequencing data
DOI: 10.6084/m9.figshare.1536717.v1
title: Coarse root data from: Soil organic carbon and root distribution in a temperate arable agroforestry system

description: Data described at: https://github.com/maupson/research_data/tree/master/silsoe/silsoe_coarse_root_agg
DOI: 10.6084/m9.figshare.1536701
title: Comparison of 454 and PGM platforms

description: mapping file for PGM platform
DOI: 10.6084/m9.figshare.1536702.v1
title: 454_mappingfile

description: Mapping file for 454 sequencing data
DOI: 10.6084/m9.figshare.1536703.v1
title: 454_rawdata

description: Raw data from sequence from 454 platfrom
DOI: 10.6084/m9.figshare.1536704.v1
title: PGM_rawdata

description: raw data sequence from PGM platform
DOI: 10.26030/repq-aw94
title: Comparison of gene expression profiles of normal human bronchial epithelial cells in 2D and 3D cultural conditions

description: The experiment is part of a project to study DNA repair process after ionizing radiation in organotypic 3-dimentional human bronchial epithlial cell culture. Human bronchial epithelial cells were grown in tissue culture flask (2D) or in matrics gel (3D). Three independent cultures were done for each condition.
DOI: 10.6084/m9.figshare.1536702.v3
title: Comparison of 454 and PGM platforms

description: Mapping file for 454 sequencing data
DOI: 10.6084/m9.figshare.1536703.v3
title: Comparison of 454 and PGM platforms

description: Raw data from sequence from 454 platfrom
DOI: 10.6084/m9.figshare.1536704.v3
title: Comparison of 454 and PGM platforms

description: raw data sequence from PGM platform
DOI: 10.6084/m9.figshare.1536551
title: Positron Emission Tomography–Computed Tomography Positron Emission Tomography–Computed Tomography

description: PET-CT images
DOI: 10.6084/m9.figshare.1536703.v2
title: comparasion of 454 and PGM platforms

description: Raw data from sequence from 454 platfrom
DOI: 10.6084/m9.figshare.1536704.v2
title: comparasion of 454 and PGM platforms

description: raw data sequence from PGM platform
DOI: 10.6084/m9.figshare.1536702.v2
title: comparasion of 454 and PGM platforms

description: Mapping file for 454 sequencing data
DOI: 10.6084/m9.figshare.1536701.v1
title: PGM mapping

description: mapping file for PGM platform
DOI: 10.6084/m9.figshare.1536701.v3
title: Comparison of 454 and PGM platforms

description: mapping file for PGM platform
DOI: 10.6084/m9.figshare.1536701.v2
title: comparasion of 454 and PGM platforms

description: mapping file for PGM platform
DOI: 10.6084/m9.figshare.1536527
title: Spatio-temporal pattern recognisers using spiking neurons and spike-timing-dependent plasticity

description: It has previously been shown that by using spike-timing-dependent plasticity, neurons can adapt to the beginning of a repeating spatio-temporal firing pattern in their input. In the present work we demonstrate that this mechanism can be extended to train recognisers for longer spatio-temporal input signals. Using a number of neurons that are mutually connected by plastic synapses and subject to a global winner-takes-all mechanism, chains of neurons can form where each neuron is selective to a different segment of a repeating input pattern, and the neurons are feedforwardly connected in such a way that both the correct input segment and the firing of the previous neurons are required in order to activate the next neuron in the chain. This is akin to a simple class of finite state automata. We show that nearest-neighbour spike-timing-dependent plasticity (where only the pre-synaptic spike most recent to a post-synaptic one is considered) leads to ''nearest-neighbour'' chains where connections only form between subsequent states in a chain (similar to classic ''synfire chains''). In contrast, ''all-to-all spike-timing-dependent plasticity'' (where all pre- and post-synaptic spike pairs matter) leads to multiple connections that can span several temporal stages in the chain; these connections respect the temporal order of the neurons. It is also demonstrated that previously learnt individual chains can be ''stitched together'' by repeatedly presenting them in a fixed order. This way longer sequence recognisers can be formed, and potentially also nested structures. Robustness of recognition with respect to speed variations in the input patterns is shown to depend on rise-times of post-synaptic potentials and the membrane noise. It is argued that the memory capacity of the model is high, but could theoretically be increased using sparse codes.
DOI: 10.6084/m9.figshare.1536527.v1
title: Spatio-temporal pattern recognisers using spiking neurons and spike-timing-dependent plasticity

description: It has previously been shown that by using spike-timing-dependent plasticity, neurons can adapt to the beginning of a repeating spatio-temporal firing pattern in their input. In the present work we demonstrate that this mechanism can be extended to train recognisers for longer spatio-temporal input signals. Using a number of neurons that are mutually connected by plastic synapses and subject to a global winner-takes-all mechanism, chains of neurons can form where each neuron is selective to a different segment of a repeating input pattern, and the neurons are feedforwardly connected in such a way that both the correct input segment and the firing of the previous neurons are required in order to activate the next neuron in the chain. This is akin to a simple class of finite state automata. We show that nearest-neighbour spike-timing-dependent plasticity (where only the pre-synaptic spike most recent to a post-synaptic one is considered) leads to ''nearest-neighbour'' chains where connections only form between subsequent states in a chain (similar to classic ''synfire chains''). In contrast, ''all-to-all spike-timing-dependent plasticity'' (where all pre- and post-synaptic spike pairs matter) leads to multiple connections that can span several temporal stages in the chain; these connections respect the temporal order of the neurons. It is also demonstrated that previously learnt individual chains can be ''stitched together'' by repeatedly presenting them in a fixed order. This way longer sequence recognisers can be formed, and potentially also nested structures. Robustness of recognition with respect to speed variations in the input patterns is shown to depend on rise-times of post-synaptic potentials and the membrane noise. It is argued that the memory capacity of the model is high, but could theoretically be increased using sparse codes.
DOI: 10.6084/m9.figshare.1536518
title: Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons: Source data for all figures

description: This is source data for all figures in the following publication: Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons Yujin Kim,*, Ching-Lung Hsu,*, Mark S. Cembrowski, Brett D. Mensh, Nelson Spruston Elife. 2015 Aug 6;4. doi: 10.7554/eLife.06414. [Epub ahead of print]
DOI: 10.6084/m9.figshare.1536484
title: Silk-based biocompatible random lasing

description: Random lasing exploits multiple scattering in an active disordered system in order to promote light amplification [1, 2]. Here we propose random lasing as a mechanism for sensing, capable of probing subtle changes in chemical environment due to the intrinsic non-linear response as well as the large spectral purity [3]. We report a biocompatible self-assembled random laser, made entirely of doped silk [4], showing clear threshold behaviour and spectral narrowing. We show that with a simple self-assembly process the porous silk matrix can be incorporated with different dyes and casted in a free-standing inverse photonic glass [5] with designed collective scattering Mie resonances [6]. This acts as a nonlinear sensor that switches off lasing for high pH values. The combination of a natural biopolymer and random lasing offers the opportunity for integration of a laser within living tissue, opening a new path at the interface between nanophotonics and medicine.
DOI: 10.6084/m9.figshare.1536480
title: The effects of the endocannabinoids anandamide and 2-arachidonoylglycerol on human osteoblast proliferation and differentiation

description: The effects of the endocannabinoids anandamide and 2-arachidonoylglycerol on human osteoblast proliferation and differentiation
DOI: 10.6084/m9.figshare.1536518.v1
title: Source data for all figures

description: This is source data for all figures in the following publication: Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons Yujin Kim,*, Ching-Lung Hsu,*, Mark S. Cembrowski, Brett D. Mensh, Nelson Spruston Elife. 2015 Aug 6;4. doi: 10.7554/eLife.06414. [Epub ahead of print]
DOI: 10.6084/m9.figshare.1536518.v3
title: Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons: Source data for all figures

description: This is source data for all figures in the following publication: Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons Yujin Kim,*, Ching-Lung Hsu,*, Mark S. Cembrowski, Brett D. Mensh, Nelson Spruston Elife. 2015 Aug 6;4. doi: 10.7554/eLife.06414. [Epub ahead of print]
DOI: 10.6084/m9.figshare.1536484.v1
title: Silk-based biocompatible random lasing

description: Random lasing exploits multiple scattering in an active disordered system in order to promote light amplification [1, 2]. Here we propose random lasing as a mechanism for sensing, capable of probing subtle changes in chemical environment due to the intrinsic non-linear response as well as the large spectral purity [3]. We report a biocompatible self-assembled random laser, made entirely of doped silk [4], showing clear threshold behaviour and spectral narrowing. We show that with a simple self-assembly process the porous silk matrix can be incorporated with different dyes and casted in a free-standing inverse photonic glass [5] with designed collective scattering Mie resonances [6]. This acts as a nonlinear sensor that switches off lasing for high pH values. The combination of a natural biopolymer and random lasing offers the opportunity for integration of a laser within living tissue, opening a new path at the interface between nanophotonics and medicine.
DOI: 10.6084/m9.figshare.1536518.v2
title: Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons: Source data for all figures

description: This is source data for all figures in the following publication: Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons Yujin Kim,*, Ching-Lung Hsu,*, Mark S. Cembrowski, Brett D. Mensh, Nelson Spruston Elife. 2015 Aug 6;4. doi: 10.7554/eLife.06414. [Epub ahead of print]
DOI: 10.6084/m9.figshare.1536467
title: GenFamClust: An accurate, synteny-aware and reliable homology inference algorithm

description: Complete datasets, results and supplementary data for homology and gene family inference. It contains the complete supplementary data.
DOI: 10.6084/m9.figshare.1536469
title: BED Emissivity Spectral Library

description: Remote-sensing infrared spectroscopy is the principal field of investigation for planetary surfaces composition. Past, present and future<br>missions to the solar system bodies include in their payload, instruments measuring the emerging radiation in the infrared range. Apart<br>from measuring the reflected radiance, more and more spacecrafts are equipped with instruments measuring directly the emitted<br>radiation from the planetary surface.<br>The emitted radiation is not only a function of the composition of the material but also of its texture and especially the grain size<br>distribution. For the interpretation of the measured data an emissivity spectral library of planetary analogue materials in grain size<br>fractions appropriate for planetary surfaces is needed. The Berlin emissivity database (BED) presented here is focused on relatively finegrained<br>size separates, providing thereby a realistic basis for the interpretation of thermal emission spectra of planetary regoliths. The<br>BED is therefore complimentary to existing thermal emission libraries, like the ASU library for example. BED currently contains<br>emissivity spectra of plagioclase and potassium feldspars, low Ca and high Ca pyroxenes, olivine, elemental sulfur, Martian analogue<br>minerals and volcanic soils, and a lunar highland soil sample measured in the wavelength range from 7 to 22 µm as a function of particle<br>size. For each sample we measured the spectra of four particle size separates ranging from 25 to 250 µm.<br>The device we used is built at DLR (Berlin) and is coupled to a Fourier-transform infrared spectrometer Bruker IFS 88 purged with<br>dry air and equipped with a nitrogen-cooled MCT detector. All spectra were acquired with a spectral resolution of 4 cm- 1.<br>We are currently working on upgrading our emissivity facility. A new spectrometer (Bruker VERTEX 80 V) and new detectors will<br>allow us to measure the emissivity of samples in the wavelength range from 1 to 50 µm in a vacuum environment. This will be particularly<br>important for the interpretation of the MERcury Thermal Infrared Imaging Spectrometer (MERTIS) data.
DOI: 10.6084/m9.figshare.1536426
title: Example of use of PSO #1

description: Assigning statuses to a paper.
DOI: 10.6084/m9.figshare.1536467.v1
title: Comparative Analysis of GenFamClust with other homology inference algorithms for chordat, fungal and synthetic datasets

description: Complete datasets, results and supplementary data for homology and gene family inference. It contains the complete supplementary data.
DOI: 10.6084/m9.figshare.1536467.v2
title: Comparative Analysis of GenFamClust with other homology inference algorithms for chordat, fungal and synthetic datasets

description: Complete datasets, results and supplementary data for homology and gene family inference. It contains the complete supplementary data.
DOI: 10.6084/m9.figshare.1536467.v3
title: GenFamClust: An accurate, synteny-aware and reliable homology inference algorithm

description: Complete datasets, results and supplementary data for homology and gene family inference. It contains the complete supplementary data.
DOI: 10.6084/m9.figshare.1536415
title: STDP Pattern Onset Learning Depends on Background Activity

description: Spike-timing dependent plasticity is a learning mechanism used extensively within neural modelling. The learning rule has previously been shown to allow a neuron to learn a repeated spatio-temporal pattern among its afferents and respond at its onset. In this study we reconfirm these previous results and additionaly adduce that such learning is dependent on background activity. Furthermore, we found that the onset learning is unstable when in a noisy framework. Specifically, if the level of background activity changes during learning the response latency of a neuron may increase and with the adding of additional noise the distribution of response latencies degrades. Consequently, we present preliminary insights into the neuron’s encoding: viz. that a neuron may encode the coincidence of spikes from a subsection of a stimulus’ afferents, but the temporal precision of the onset response depends on some background activity, which must be similar to that present during learning.