cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1186816.09fu
title: SH1186816.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1186817.09fu
title: SH1186817.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1186818.09fu
title: SH1186818.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1186819.09fu
title: SH1186819.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/z3purb
title: 2018 Marine Biological Association of the UK (MBA) Yealm Bioblitz

description: On 13/07/18 and 14/07/18 members of the public ranging from experienced taxonomists to school children took part in a 24 hour survey of the wildlife in the Yealm Estuary.
DOI: 10.6084/m9.figshare.19588764
title: Additional file 1 of Flap endonuclease 1 and DNA-PKcs synergistically participate in stabilizing replication fork to encounter replication stress in glioma cells

description: Additional file 1. Fig. S1. a, FEN1 expression in normal glioma patients samples. Fig. S2. a, M059K cells were transfected with control (siNC) or FEN1 siRNA (siFEN1) for 48 h and then treated with the indicated doses of HU for 4 h or not. Fig. S3. a, b, GSEA plot of DNA replication, cell cycle, and homologous recombination signatures in glioma samples. Fig. S4. a, b, Fork degradation was evaluated upon HU treatment in M059K cells transfected with siSMARCAL1, siZRANB3, siHLTF or siDNA2 for 48 h. Fig S5. a, b, Whole-cell lysates of cells were analyzed by western blotting using the indicated antibodies. Fig S6. a, Colony formation assay of cells transfected with siDNA-PKcs treated with sc-13.
DOI: 10.6084/m9.figshare.13297329.v1
title: Additional file 2 of Ultrasound shear wave elastography for assessing diaphragm function in mechanically ventilated patients: a breath-by-breath analysis

description: Additional file 2. Figure S2: Individual correlation coefficients between changes in transdiaphragmatic pressure (ΔPdi) and changes in diaphragm shear modulus (SMdi) can be found at the following link: https://figshare.com/s/c0f06ddf34d5a784ccb5 .
DOI: 10.6084/m9.figshare.20105527
title: Additional file 3 of Mechanism of reduced muscle atrophy via ketone body (D)-3-hydroxybutyrate

description: Additional file 3: Table S2. Lists raw data of identified metabolites in the targeted and untargeted metabolomic analysis, normalizad data for the metabolites of nucleotide metabolism (related to Fig. 5) and metabolites in Additional file 1: Fig. S5 are also included in sheets.
DOI: 10.6084/m9.figshare.22210286
title: Coordinated alternation of DNA methylation and alternative splicing of PBRM1 affect bovine sperm structure and motility

description: DNA methylation and gene alternative splicing drive spermatogenesis. In screening DNA methylation markers and transcripts related to sperm motility, semen from three pairs of full-sibling Holstein bulls with high and low motility was subjected to reduced representation bisulphite sequencing. A total of 948 DMRs were found in 874 genes (gDMRs). Approximately 89% of gDMR-related genes harboured alternative splicing events, including <i>SMAD2, KIF17</i>, and <i>PBRM1</i>. One DMR in exon 29 of <i>PBRM1</i> with the highest 5mC ratio was found, and hypermethylation in this region was related to bull sperm motility. Furthermore, alternative splicing events at exon 29 of <i>PBRM1</i> were found in bull testis, including <i>PBRM1-complete, PBRM1-SV1</i> (exon 28 deletion), and <i>PBRM1-SV2</i> (exons 28–29 deletion). <i>PBRM1-SV2</i> exhibited significantly higher expression in adult bull testes than in newborn bull testes. In addition, <i>PBRM1</i> was localized to the redundant nuclear membrane of bull sperm, which might be related to sperm motility caused by sperm tail breakage. Therefore, the hypermethylation of exon 29 may be associated with the production of <i>PBRM1-SV2</i> in spermatogenesis. These findings indicated that DNA methylation alteration at specific loci could regulate gene splicing and expression and synergistically alter sperm structure and motility.
DOI: 10.6084/m9.figshare.16435858.v1
title: Additional file 1 of Long non-coding RNA TUG1 knockdown promotes autophagy and improves acute renal injury in ischemia-reperfusion-treated rats by binding to microRNA-29 to silence PTEN

description: Additional file 1: Supplementary Figures S1, S2 and S3 Flow chart of cell experiments and animal experiments
DOI: 10.6084/m9.figshare.20105527.v1
title: Additional file 3 of Mechanism of reduced muscle atrophy via ketone body (D)-3-hydroxybutyrate

description: Additional file 3: Table S2. Lists raw data of identified metabolites in the targeted and untargeted metabolomic analysis, normalizad data for the metabolites of nucleotide metabolism (related to Fig. 5) and metabolites in Additional file 1: Fig. S5 are also included in sheets.
DOI: 10.6084/m9.figshare.7542185
title: Source Data.xlsx

description: paper data
DOI: 10.6084/m9.figshare.19581777.v1
title: Additional file 1 of Establishment and evaluation of a quadruple quantitative real-time PCR assay for simultaneous detection of human coronavirus subtypes

description: Additional file 1: Inter-assay and Intra-assay of coefficient of variation (CV) of the qq-PCR assay.
DOI: 10.6084/m9.figshare.16435801
title: Additional file 2 of Formation mechanisms of ringwoodite: clues from the Martian meteorite Northwest Africa 8705

description: Additional file 2. Additional tables of NWA 8705.
DOI: 10.6084/m9.figshare.7542773
title: Galactose-modified selenium nanoparticles for targeted delivery of doxorubicin to hepatocellular carcinoma

description: Galactose-modified selenium nanoparticles (GA-SeNPs) loading with doxorubicin (DOX) for hepatocellular carcinoma (HCC) therapy was investigated in this paper. Selenium nanoparticles (SeNPs) were modified with galactose as tumor targeting moiety to fabricate tumor-targeted delivery carrier GA-SeNPs, then doxorubicin was loaded onto the surface of GA-SeNPs for improving antitumor efficacy of DOX in HCC therapy. Chemical structure characterization of GA-Se@DOX showed that DOX was successfully loaded to the surface of GA-SeNPs to prepare functionalized antitumor drug delivery system GA-Se@DOX. GA-Se@DOX exhibited effective cellular uptake in HepG2 cells and entered HepG2 cells mainly by clathrin-mediated endocytosis pathway. GA-Se@DOX showed significant activity to induce the apoptosis of HepG2 cells <i>in vitro</i>. The western blotting result indicated that GA-Se@DOX induced HepG2 cells apoptosis via activating caspase signaling and Bcl-2 family proteins. Moreover, active targeting delivery system GA-Se@DOX exhibited excellent antitumor efficacy <i>in vivo</i> in comparison with passive targeting delivery system Se@DOX. Histology analysis showed that GA-Se@DOX exhibited no obvious damage to major organs including heart, liver, spleen, lung, and kidney under the experimental condition. Taken together, GA-Se@DOX may be one novel promising nanoscale drug candidate for HCC therapy.
DOI: 10.6084/m9.figshare.7542773.v1
title: Galactose-modified selenium nanoparticles for targeted delivery of doxorubicin to hepatocellular carcinoma

description: Galactose-modified selenium nanoparticles (GA-SeNPs) loading with doxorubicin (DOX) for hepatocellular carcinoma (HCC) therapy was investigated in this paper. Selenium nanoparticles (SeNPs) were modified with galactose as tumor targeting moiety to fabricate tumor-targeted delivery carrier GA-SeNPs, then doxorubicin was loaded onto the surface of GA-SeNPs for improving antitumor efficacy of DOX in HCC therapy. Chemical structure characterization of GA-Se@DOX showed that DOX was successfully loaded to the surface of GA-SeNPs to prepare functionalized antitumor drug delivery system GA-Se@DOX. GA-Se@DOX exhibited effective cellular uptake in HepG2 cells and entered HepG2 cells mainly by clathrin-mediated endocytosis pathway. GA-Se@DOX showed significant activity to induce the apoptosis of HepG2 cells <i>in vitro</i>. The western blotting result indicated that GA-Se@DOX induced HepG2 cells apoptosis via activating caspase signaling and Bcl-2 family proteins. Moreover, active targeting delivery system GA-Se@DOX exhibited excellent antitumor efficacy <i>in vivo</i> in comparison with passive targeting delivery system Se@DOX. Histology analysis showed that GA-Se@DOX exhibited no obvious damage to major organs including heart, liver, spleen, lung, and kidney under the experimental condition. Taken together, GA-Se@DOX may be one novel promising nanoscale drug candidate for HCC therapy.
DOI: 10.6084/m9.figshare.23271528
title: Uncovering the Q-marker and potential mechanisms of Qishan Formula for lung cancer based on multi-technology

description: Qishan Formula (QSF) is mainly used to treat lung cancer and its side effects of radiotherapy and chemotherapy. Although the clinical efficacy of QSF has been recognized, its mechanism of action and active ingredients are still unclear. This study aims to explore the potential Q-Marker of QSF and reveal its anti-lung cancer mechanism. Firstly, the fingerprints of 10 batches of QSF were established, and the potential Q-markers were screened by chemometrics, then network pharmacology and molecular docking methods were used to explore its anti-lung cancer mechanism. Finally, the potential Q-markers were quantitatively by UPLC-QDA. The results showed that 48 common peaks were identified by the established fingerprint, and calycosin, ginsenoside Rg1, atractylenolide III, atractylenolide I and ginsenoside Rb1 were screened as potential Q-Markers of QSF by chemometrics. Network pharmacology and molecular docking found that the potential Q-Markers may regulate various signaling pathways through targets such as FOS, IL6, EGFR, ESR1, MAPK1, and MAPK3, and play a therapeutic role in lung cancer. Besides, the established UPLC-QDA can also perform quality control for Q-Markers of QSF. This study can provide academic ideas and lay a foundation for the comprehensive quality control and mechanism research of QSF and other compound preparation.
DOI: 10.6084/m9.figshare.23271528.v1
title: Uncovering the Q-marker and potential mechanisms of Qishan Formula for lung cancer based on multi-technology

description: Qishan Formula (QSF) is mainly used to treat lung cancer and its side effects of radiotherapy and chemotherapy. Although the clinical efficacy of QSF has been recognized, its mechanism of action and active ingredients are still unclear. This study aims to explore the potential Q-Marker of QSF and reveal its anti-lung cancer mechanism. Firstly, the fingerprints of 10 batches of QSF were established, and the potential Q-markers were screened by chemometrics, then network pharmacology and molecular docking methods were used to explore its anti-lung cancer mechanism. Finally, the potential Q-markers were quantitatively by UPLC-QDA. The results showed that 48 common peaks were identified by the established fingerprint, and calycosin, ginsenoside Rg1, atractylenolide III, atractylenolide I and ginsenoside Rb1 were screened as potential Q-Markers of QSF by chemometrics. Network pharmacology and molecular docking found that the potential Q-Markers may regulate various signaling pathways through targets such as FOS, IL6, EGFR, ESR1, MAPK1, and MAPK3, and play a therapeutic role in lung cancer. Besides, the established UPLC-QDA can also perform quality control for Q-Markers of QSF. This study can provide academic ideas and lay a foundation for the comprehensive quality control and mechanism research of QSF and other compound preparation.
DOI: 10.6084/m9.figshare.24320112
title: Additional file 9 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 9: Table S1. Human Clonorchis sinensis infection in national surveys of important human parasitic diseases in China.
DOI: 10.6084/m9.figshare.24320112.v1
title: Additional file 9 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 9: Table S1. Human Clonorchis sinensis infection in national surveys of important human parasitic diseases in China.
DOI: 10.6084/m9.figshare.24320115
title: Additional file 10 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 10: Table S2. Publications reporting Clonorchis sinensis infection in the first intermediate hosts in China.
DOI: 10.6084/m9.figshare.24320115.v1
title: Additional file 10 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 10: Table S2. Publications reporting Clonorchis sinensis infection in the first intermediate hosts in China.
DOI: 10.6084/m9.figshare.24320118
title: Additional file 11 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 11: Table S3. Publications reporting Clonorchis sinensis infection in the second intermediate hosts in China.
DOI: 10.6084/m9.figshare.24320118.v1
title: Additional file 11 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 11: Table S3. Publications reporting Clonorchis sinensis infection in the second intermediate hosts in China.
DOI: 10.6084/m9.figshare.24320121
title: Additional file 12 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 12: Table S4. Publications reporting Clonorchis sinensis infection in animal reservoirs in China.
DOI: 10.6084/m9.figshare.24320121.v1
title: Additional file 12 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 12: Table S4. Publications reporting Clonorchis sinensis infection in animal reservoirs in China.
DOI: 10.6084/m9.figshare.24320124
title: Additional file 13 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 13: Table S5. Multivariable meta-regression analysis for Clonorchis sinensis infection in the first intermediate hosts, the second intermediate hosts, and animal reservoirs.
DOI: 10.6084/m9.figshare.24320124.v1
title: Additional file 13 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 13: Table S5. Multivariable meta-regression analysis for Clonorchis sinensis infection in the first intermediate hosts, the second intermediate hosts, and animal reservoirs.
DOI: 10.6084/m9.figshare.24320127
title: Additional file 14 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 14: Table S6. Sensitivity analysis of the pooled prevalence of Clonorchis sinensis in animal hosts.
DOI: 10.6084/m9.figshare.24320127.v1
title: Additional file 14 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 14: Table S6. Sensitivity analysis of the pooled prevalence of Clonorchis sinensis in animal hosts.
DOI: 10.6084/m9.figshare.24320130
title: Additional file 15 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 15: Table S7. Sensitive analysis for spatio-temporal disparity of Clonorchis sinensis in animals in China.
DOI: 10.6084/m9.figshare.24320130.v1
title: Additional file 15 of Spatio-temporal disparities of Clonorchis sinensis infection in animal hosts in China: a systematic review and meta-analysis

description: Additional file 15: Table S7. Sensitive analysis for spatio-temporal disparity of Clonorchis sinensis in animals in China.
DOI: 10.34740/kaggle/dsv/7617780
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.14870251
title: Additional file 10 of Genome-wide identification and expression analysis of LBD transcription factor genes in Moso bamboo (Phyllostachys edulis)

description: Additional file 10: Supplemental Data 2. The specific primers of PeLBD genes for qRT-PCR.
DOI: 10.6084/m9.figshare.14870278
title: Additional file 8 of Genome-wide identification and expression analysis of LBD transcription factor genes in Moso bamboo (Phyllostachys edulis)

description: Additional file 8: Supplemental Table 2. Detailed information on GO and KEGG enrichment analysis in PeLBD target gene.
DOI: 10.6084/m9.figshare.14870254.v1
title: Additional file 11 of Genome-wide identification and expression analysis of LBD transcription factor genes in Moso bamboo (Phyllostachys edulis)

description: Additional file 11: Supplemental Data 3. Detailed information on gene ontology enrichment analysis in PeLBD family.
DOI: 10.6084/m9.figshare.14870275.v1
title: Additional file 7 of Genome-wide identification and expression analysis of LBD transcription factor genes in Moso bamboo (Phyllostachys edulis)

description: Additional file 7: Supplemental Table 1. The Ka-Ks analysis of 17 PeLBD duplicated gene pairs.
DOI: 10.6084/m9.figshare.14870281
title: Additional file 9 of Genome-wide identification and expression analysis of LBD transcription factor genes in Moso bamboo (Phyllostachys edulis)

description: Additional file 9: Supplemental Data 1. Detailed information on interspecies synteny of the moso bamboo genome.
DOI: 10.6084/m9.figshare.20105445.v1
title: Additional file 5 of Identification, characterization and functional analysis of gonadal long noncoding RNAs in a protogynous hermaphroditic teleost fish, the ricefield eel (Monopterus albus)

description: Additional file 5: Dataset S2. GO terms with significant differences among different developmental stages.
DOI: 10.6084/m9.figshare.20105448.v1
title: Additional file 6 of Identification, characterization and functional analysis of gonadal long noncoding RNAs in a protogynous hermaphroditic teleost fish, the ricefield eel (Monopterus albus)

description: Additional file 6: Dataset S3. DE-lncRNAs and their targets in the significantly enriched GO terms and KEGG pathways.
DOI: 10.6084/m9.figshare.14870275
title: Additional file 7 of Genome-wide identification and expression analysis of LBD transcription factor genes in Moso bamboo (Phyllostachys edulis)

description: Additional file 7: Supplemental Table 1. The Ka-Ks analysis of 17 PeLBD duplicated gene pairs.
DOI: 10.6084/m9.figshare.14870249
title: Additional file 1 of DNA methylation-based sex classifier to predict sex and identify sex chromosome aneuploidy

description: Additional file 1 Sex related differentially methylated CpGs. A list of the identified 4331 sex related differentially methylated CpGs on sex chromoseomes which are also used to construct the classifier.
DOI: 10.6084/m9.figshare.14870278.v1
title: Additional file 8 of Genome-wide identification and expression analysis of LBD transcription factor genes in Moso bamboo (Phyllostachys edulis)

description: Additional file 8: Supplemental Table 2. Detailed information on GO and KEGG enrichment analysis in PeLBD target gene.
DOI: 10.6084/m9.figshare.14870281.v1
title: Additional file 9 of Genome-wide identification and expression analysis of LBD transcription factor genes in Moso bamboo (Phyllostachys edulis)

description: Additional file 9: Supplemental Data 1. Detailed information on interspecies synteny of the moso bamboo genome.