cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7265096.v1
title: Cascading regime shifts within and across scales

description: This dataset was used in the study "Cascading regime shifts within and across scales". A detailed description of our methods is available as a preprint at https://www.biorxiv.org/content/early/2018/07/07/364620, and all the code is open source available at https://github.com/juanrocha/Domino. <br>The dataset comprises three comma separated value (.csv) files: "RegimeShiftsDatabase" and "Regime_Shifts_Database_Case_Studies" were both downloaded from the original source, the regime shift database (www.regimeshifts.org). The numbers on the files names correspond to the dates they were downloaded. Functions to read and restructure these files are available on our github repo. The third file "RS_CLD_2018" contains the curated causal diagrams used in our analysis. <br><br>
DOI: 10.17632/pwj4gsp5mx
title: Plato: A localised orbital based density functional theory code

description: Abstract The Plato package allows both orthogonal and non-orthogonal tight-binding as well as density functional theory (DFT) calculations to be performed within a single framework. The package also provides extensive tools for analysing the results of simulations as well as a number of tools for creating input files. The code is based upon the ideas first discussed in Sankey and Niklewski (1989) [1] with extensions to allow high-quality DFT calculations to be performed. DFT calculations can utilise e... Title of program: Plato Catalogue Id: AEFC_v1_0 Nature of problem Density functional theory study of electronic structure and total energies of molecules, crystals and surfaces. Versions of this program held in the CPC repository in Mendeley Data AEFC_v1_0; Plato; 10.1016/j.cpc.2009.08.006 AEFC_v2_0; PLATO; 10.1016/j.cpc.2011.01.030 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.23524185.v2
title: Raw data for the publication of Whole-transcriptome analysis reveals mechanisms underlying antibacterial activity and biofilm inhibition by a malic acid combination (MAC) in Pseudomonas aeruginosa

description: We provide the raw data for all our experimental results for the article entitled: Whole-transcriptome analysis reveals mechanisms underlying antibacterial activity and biofilm inhibition by a malic acid combination (MAC) in <em>Pseudomonas aeruginosa</em>.
DOI: 10.6084/m9.figshare.28931237.v1
title: Data_set_offset.xlsx

description: Data set about offset training protocol.
DOI: 10.6084/m9.figshare.14303240.v1
title: Ultra-processed products industry operating as an interest group

description: ABSTRACT The participation of the ultra-processed products industry in efforts to reduce obesity and diet-related non-communicable diseases has been questioned, especially because there is evidence of its interference in policy-making processes. This article builds on the Collective Action Theory and the literature of political science to discuss the role of this sector as a special interest group that uses its significant economic power to influence government decisions in its favor. In Brazil, its participation occurs mainly with industry associations. However, it has not yet been established whether their interests prevail in the decision-making process. It has been suggested that research should be carried out to determine the degree of success of their actions, identifying the conditions associated with the convergence of policy results with their interests and indicating to what extent civil society organizations are able to make public interests override private ones.
DOI: 10.6084/m9.figshare.24045360.v1
title: Vpe.genes.gff

description: Gene annotation file for Verpa penis genome in gff formate
DOI: 10.6084/m9.figshare.24566611.v1
title: blosum62

description: BLOSUM62 matrix for comparing sequences of proteins/
DOI: 10.6084/m9.figshare.24790824.v1
title: Barrios DMQ

description: Barrios y Sectores Distrito Metropolitano de Quito - Año 2018
DOI: 10.6084/m9.figshare.5831538.v1
title: DFT studies on the base-facilitated direct coupling of carbon dioxide with 2,2-dimethyl-1,3-propanediol

description: DFT calculations to support the article 'Synthesis of 5-to 8- membered cyclic carbonates from diols and CO<sub>2</sub>: a one-step, atmospheric pressure and ambient temperature procedure'<br>DFT study comprises:-DFT optimised geometries and computed enthalpies were used to calculate the thermodynamics and kinetics of the carbonation of 2,2-dimethyl-1,3-propanediol's alcohol moiety facilitated by NEt<sub>3</sub>, TMP, pyridine and DBU into the hydroxyl via a ternary Lewis base-CO<sub>2</sub>-diol mechanism. -DFT optimised geometries and computed enthalpies were used to calculate the thermodynamics and kinetics of the cyclisation of 4,4-dimethyl-7-oxo-7-(tosyloxy)heptanoate (BCI) to form 5,5-dimethyl-1,3-dioxan-2-one.-DFT optimised geometries and computed enthalpies were used to calculate the thermodynamics and kinetics of the NEt3-facilitated direct coupling of CO<sub>2</sub> with 2,2-dimethyl-1,3-propanediol to form 5,5-dimethyl-1,3-dioxan-2-one via three competitive mechanistic pathways. <br>Protocol:rωb97xD/6-31+g(d)/cpcm=acetonitrile/298K <br>Content:-Gaussian09 rev D.01 output files-CO2_insertion_comparison.pdf, illustrating the calculations made and summarising the enthalpies computed for NEt<sub>3</sub>, TMP, pyridine and DBU into the hydroxyl group of 2,2-dimethyl-1,3-propanediol via a ternary Lewis base-CO<sub>2</sub>-diol mechanism. -BCI_cyclisation.pdf, illustrating the calculations made and summarising the enthalpies computed for the cyclisation of BCI to form 5,5-dimethyl-1,3-dioxan-2-one- NEt3_mechanism, illustrating the calculations made and summarising the enthalpies computed for the direct coupling of CO<sub>2</sub> with 2,2-dimethyl-1,3-propanediol to form 5,5-dimethyl-1,3-dioxan-2-one via three competitive mechanistic pathways.<br>
DOI: 10.17632/dpztxknw7y
title: Flow cytometry data of HSPCs and erythroid cells from the HAPC study

description: The flow cytometry data from the study entitled "An erythroid-biased FOShi hematopoietic multipotent progenitor subpopulation contributes to adaptation to chronic hypoxia".
DOI: 10.17632/rtnwsjgtr9
title: Data for: Using soil hydromorphic degree for adjusting steady-state water table simulations along catenas in semiarid Russia

description: This a analytical derivation of the equation for the hillslope water storage for the steady state case
DOI: 10.17632/y562ymnzbc
title: A three-stage visual training test based on the METUX model: motivation, engagement, and well-being

description: The data serves as the basis for the paper's visualization of the data graphs and the key to the essay's thesis statement.
DOI: 10.6084/m9.figshare.9204998.v4
title: Genome-Wide Association Study of the Frailty Index - Atkins et al. 2021

description: Genome-wide summary statistics from the GWAS analysis of the Frailty Index in participants of European descent aged 60+ from UK Biobank and TwinGene.<br>If used please cite paper Atkins et al. 2021 "A Genome-Wide Association Study of the Frailty Index Highlights Brain Pathways in Healthy Aging"<br>Included are two files: 1. meta-analysis results, 2. individual SNP associations in UK Biobank and TwinGene<br><br>README file included with each summary stats file. All base pair coordinates are GRCh37<br>Abstract<br>Frailty is a common geriatric syndrome, strongly associated with disability, mortality and hospitalisation. Frailty is commonly measured using the frailty index (FI), based on the accumulation of a number of health deficits during the life course. The mechanisms underlying FI are multifactorial and not well understood, but a genetic basis has been suggested with heritability estimates between 30 and 45%. Understanding the genetic determinants and biological mechanisms underpinning FI may help to delay or even prevent frailty. We performed a genome-wide association study (GWAS) meta-analysis of a frailty index in European descent UK Biobank participants (n=164,610, aged 60-70 years) and Swedish TwinGene participants (n=10,616, aged 41-87 years). FI calculation was based on 49 or 44 self-reported items on symptoms, disabilities and diagnosed diseases for UK Biobank and TwinGene respectively. 14 loci were associated with the FI (p&lt;5*10-8). Many FI-associated loci have established associations with traits such as body mass index, cardiovascular disease, smoking, HLA proteins, depression and neuroticism; however, one appears to be novel. The estimated single nucleotide polymorphism (SNP) heritability of the FI was 11% (0.11, SE 0.005). In enrichment analysis, genes expressed in the frontal cortex and hippocampus were significantly downregulated (adjusted p&lt;0.05). We also used Mendelian randomization to identify modifiable traits and exposures that may affect frailty risk, with a higher educational attainment genetic risk score being associated with a lower degree of frailty. Risk of frailty is influenced by many genetic factors, including well-known disease risk factors and mental health, with particular emphasis on pathways in the brain.<br>Preprint available https://doi.org/10.1101/19007559
DOI: 10.17632/4khs7jgtyz
title: Biaxial strain data for composite materials

description: Dataset Description: Composite Material Stress and Strain

This dataset encompasses stress and strain measurements obtained from experiments conducted on a composite material. The data spans various conditions or loading scenarios applied to the material, capturing the material's response concerning stress and strain in different dimensions.

Features:
Stress: The applied force per unit area exerted on the material, measured in an unspecified unit (normalised or scaled values).
Strain in X: The change in length (or deformation) in the x-direction of the material concerning the applied force.
Strain in Y: Similar to strain in X, this represents the deformation in the y-direction caused by the applied force.
Strain XY: The shear deformation or strain occurring in the xy plane, perpendicular to the z-axis.
Insights:
Initial State (Data Point 0): The initial data point shows zero stress and strain across all dimensions, indicating the material's baseline state before any applied force.
Progressive Stress-Strain Relationship: As the stress increases gradually from subsequent data points, there's a corresponding increment in strain values, demonstrating the material's response to increasing stress levels. The strains appear relatively small compared to the stress values, indicating a linear or proportional relationship between stress and strain within this range.
Shear Strain Variation: Notably, the shear strain (Strain XY) remains consistently negative, suggesting a consistent type of deformation within the xy plane despite varying stress levels.
Observations:
Incremental Stress-Strain Behaviour: The stress increments marginally across data points, possibly representing a controlled stress test where the material is subjected to incremental loading.
Consistency in Strain Patterns: Strain values show incremental changes, suggesting the material's linear or elastic behavior under these applied forces.
Potential Analysis:
Elastic Limit Exploration: Further analysis might involve determining the material's elastic limit or investigating potential deviations from linear behaviour as stress reaches higher levels.
Comparative Studies: Comparative analysis with different material compositions or under varying environmental conditions could reveal how this composite material fares in comparison.
DOI: 10.6084/m9.figshare.24560323.v1
title: Data for 'Scorpionfish adjust skin pattern contrast on different backgrounds'

description: The datasets were used in the paper 'Scorpionfish adjust skin pattern contrast on different backgrounds'.<br>
DOI: 10.6084/m9.figshare.3527351.v1
title: Appendix C. Methods for DNA extraction, PCR, sequencing, and sequence assembly.

description: Methods for DNA extraction, PCR, sequencing, and sequence assembly.
DOI: 10.6084/m9.figshare.29198729.v1
title: Matlab code for the fUSI + UDS experiment

description: The code used for generating the activation maps for the patient P2 in the fUSI + UDS study.
DOI: 10.4121/19487222.v1
title: BlueROV sonar data and camera images recorded at De Salamander windmill on 28-03-2022

description: Underwater sonar data and camera images recored in rosbag format using ROS. Recordings were performed using a BlueROV2 robot equipped with PIng360 sonar and standard camera. ROS setup: - ROS Kinetic - Ping360 sonar ROS packaged: ttps://github.com/CentraleNantesRobotics/ping360_sonar/tree/aa48eb6e5ae2650e5cf1d270e0fe4ce8fb3c8b0f <br> Morning data: default BlueROV2 configuration Afternoon data: BlueROV2 customized as represented in figure 'bluerov_customized.jpg' in afternoon zip file <br> Data was recorded at De Salamander windmill on 28-03-2022. This data will be used in the activities of REMARO (https://remaro.eu/) project. <br>
DOI: 10.6084/m9.figshare.11499360.v2
title: Syngnathiformes immune gene alignments

description: Alignments of selected immune genes from various <i>Syngnathiformes</i> species.<br>
DOI: 10.6084/m9.figshare.17113562.v1
title: LESCO pXRD data

description: CIFs for the final selected refinements and the associated raw (.xy) data for LESCO, along with the relevant instrument standard files.
DOI: 10.6084/m9.figshare.21259497.v2
title: Irrigation management in tomato

description: The project has been designed for the irrigation management in tomatoes, the photographs of the leaves have been taken in different stages of plant growths with different treatments, 25% of recommended irrigation application, 20% of recommended irrigation, 75% of recommended irrigation and 100% of recommended irrigation.
DOI: 10.6084/m9.figshare.21625765.v1
title: motor imagary and stroke

description: The EEG datasets of patients about motor imagery
DOI: 10.6084/m9.figshare.26122249.v2
title: Dataset

description: Root exudation, the export of low-molecular weight organic carbon (C) from living plant roots to soil, influences microbial activity, nutrient availability, and ecosystem feedbacks to climate change, but the magnitude of this C flux at ecosystem and global scales is largely unknown. Here, we synthesize <i>in situ</i> measurements of root exudation rates and couple those to estimates of fine root biomass to estimate global and biome-level root exudate C fluxes. We estimate a global root exudate flux of 13.4 (10.1 – 20.2) Pg C y<sup>-1</sup>,or about 9% (7 – 14%) of global annual gross primary productivity. We did not find differences in root mass-specific exudation rates among biomes, though total exudate fluxes are estimated to be greatest in grasslands owing to their high density of absorptive root biomass. Our synthesis highlights the global importance of root exudates in the terrestrial C cycle and identifies regions where more <i>in situ</i> measurements are needed to improve future estimates of root exudate C fluxes.EDIT 12/03/24: The species in the study Gao et al. 2023 were mislabeled in the original upload. This has been corrected in the revised file. Thank you to Wenjia Cai for pointing out the error.
DOI: 10.17632/4p3cnnnjmf
title: EAM-EDIT

description: Merged data from EDIT and EAM surveys from Colombia
DOI: 10.6084/m9.figshare.24195225.v1
title: Supp_Table_3_muscle_miR_pathways.xlsx

description: Pathway analysis of yellow module miRNA gene targets. Pathways include those associated with Hippo, Hedgehog, FoxO, and Wnt signaling pathways as well as immune/inflammation associated pathways. Notably, targets in the MAPK, NFKB, IL, and STAT families were identified.
DOI: 10.17632/ywsxzx5v88
title: Banana Project Dataset

description: Dataset used for the Banana Grading System Project.
DOI: 10.6084/m9.figshare.11275367.v1
title: Raw data on the study titled 'Prevalence of Vitamin D deficiency in exclusively breastfed infants at a tertiary healthcare facility in Nairobi, Kenya'.

description: This data set contains information on the age, weight and length percentiles, head circumference, gender, rachitic manifestations, wrist prominence, exposure to sunlight, levels of vitamin D, parathyroid hormone, calcium, and phosphate among study participants.<br>
DOI: 10.17632/cgp2vyrtnh
title: HYGROTHERMAL PROPERTIES OF HISTORIC BRICKS FROM VARIOUS SITES OF LATVIA

description: There are available hygrothermal simulation tools that allow to model possible scenarios for optimization of thermal transmittance of historic wall, creating complex insulation systems. The accuracy of the results depends on the conformity of the input data to the specific design of existing wall. The properties of materials selected in the simulation tool should reflect as close as possible the properties of the wall under investigation. 
For theses tools to be widely applicable the material library has to include various materials from various regions, thus allowing architects, planners, real estate developers and homeowners of Latvia to use the simulation tool with greater reliance on the accuracy of the simulation results.
In order to obtain a result in mathematical modelling software simulating the humidity transfer processes, which would reflect the situation as close to the real conditions as possible, the database built into the modelling software should be supplemented with materials specific to the Latvian construction periods and obtained in different locations.
Dataset Contains hygrothermal parameters of 40 different historic brick samples from Latvia (Density, Porosity, Water vapor resistance factor, etc.).
Standard measurement methods with some adjustments were used to determine hygrothermal parameters of brick samples. The material properties were determined for a specific reason, to be used as a input data for creation of hygrothermal simulation tool material file, in this case DELPHIN simulation tool. Therefore, some deviations from the testing standards were implemented. These deviation were developed by Dresden University of Technology (also the developers of DELPHIN simulation tool) and are described in file "description.docx". 

This work has been supported by the European Social Fund within the Project No 8.2.2.0/20/I/008 “Strengthening of PhD
students and academic personnel of Riga Technical University and BA School of Business and Finance in the strategic fields
of specialization” of the Specific Objective 8.2.2 “To Strengthen Academic Staff of Higher Education Institutions in Strategic
Specialization Areas” of the Operational Programme “Growth and Employment”.
DOI: 10.17632/jt2ppwr62p
title: Instances for Weapon Target Assignment Problem

description: This dataset corresponds to the Static Weapon Target Problem (WTA), the WTA Problem aims to find best assignment of weapons to targets, to minimize the expected damage of the defended area in order to increase chances of survival. 

This supports the paper: Emrullah Sonuc, Baha Sen, Safak Bayir (2017) A Parallel Simulated Annealing Algorithm For Weapon-Target Assignment Problem
DOI: 10.17632/x5bxh3crzk
title: Data for: Probability Based Path Discovery Algorithm for Electromagnetic Nano-networks

description: One of the major challenges for nano-network is the forfeit of communication protocols to exploit the potential communication between nano-machines forming fully operational nano-network. Because nano-machines face some restrictions such as limited processing power and confined computing capabilities, up-to-date nano-machines cannot perceive partial or full routing tables, which are the main decision-makers for data routing in legacy communication networks. The reason is that creating and updating routing tables continuously require adequate processing power with sufficient memory and computing capabilities, which is not the case of nano-nodes. So, new innovative routing schemes have to be proposed for nano-networks to deal with such extremely low resources. This paper focuses on decoupling the routing intelligence from nano-network towards a computational architecture using Software Defined Networking (SDN) and Network Function Virtualization (NFV) technologies by externalizing routing decisions and complex computations from nano-nodes to be fully compiled externally. Moreover, the paper proposes a probability-based path discovery protocol denoted by (PBPD) for electromagnetic nano-nodes suitable for dynamic nano-network applications. The performance of the proposed protocol is evaluated and compared with other routing protocols discussed in the literature. The proposed scheme provides low energy consumption inside nano-nodes and low computational complexity thanks to SDN/NFV system.
DOI: 10.6084/m9.figshare.21652433.v1
title: Sequencing reads of phage escape mutants

description: Sequencing reads of phage escape mutants isolated from Kiwa ECOR8c
DOI: 10.6084/m9.figshare.28750448.v1
title: Supplementary material

description: Digital and online tools for assessing executive functions (EF) have proliferated over the past decade, driven by technological innovation and the need for scalable, remote assessment solutions. While these instruments offer practical advantages—such as increased accessibility, automated scoring, and real-time data capture—their rapid development has often outpaced rigorous psychometric validation. Available validation studies rarely adopt a comprehensive psychometric framework. This review addresses that gap by systematically mapping the psychometric evidence of digital and online EF tests for healthy adults, using five key dimensions of modern psychometrics: content validity, structural validity, relations with other variables, response processes, and consequential validity.
DOI: 10.6084/m9.figshare.5235805.v1
title: North-Western Palaearctic species of Pristiphora (Hymenoptera, Tenthredinidae): Lucid identification key

description: Data from Prous et al. (2017). The zip file contains all the Lucid data files. The electronic identification key for the species of <i>Pristiphora</i> was prepared in Lucid 3.5 Builder (http://www.lucidcentral.org/). If the licence for Lucid 3.5 is lacking, the free version of Lucid 3.3 can be used to run the key. In case of ambiguities or polymorphisms in character states, we conservatively coded these as multiple states. The key contains 90 morphological features with 244 character states, and 68 male and 71 female entities (species or groups). The first choice given in the key is between female and male, one of which has to be chosen to see all other characters. After that, characters can be chosen freely or one can use ‘Best’ and ‘Next Best’ tools in Lucid to suggest the most efficient sequence of characters for identification.<br>Prous M, Kramp K, Vikberg V, Liston A (2017) North-Western Palaearctic species of <i>Pristiphora</i> (Hymenoptera, Tenthredinidae). Journal of Hymenoptera Research 59: 1–190. https://doi.org/10.3897/jhr.59.12656<br>
DOI: 10.6084/m9.figshare.7583228.v2
title: DoV + DoD in Artificial Intelligence Weak Signals Detection

description: Results from the research of DoV and DoD in Artificial Intelligence.
DOI: 10.26188/28910213.v1
title: Autocycler: subsampled read sets

description: This archive contains the ONT read subsets used to generate the assemblies provided in the associated 'Autocycler: assemblies and reference genomes' dataset. Each subset represents ~50× coverage and was used as input to multiple long-read assembly tools during the Autocycler benchmarking study. Reads were basecalled with Dorado v0.9.5 using the sup-v5 model.See github.com/rrwick/Autocycler-paper for more details.
DOI: 10.6084/m9.figshare.25859644.v1
title: Banking Industry Performance.xlsx

description: The impact of financial performance of Indian commercial banks on their market performance.