DOI: 10.5281/zenodo.15746505
title: Real data supporting HTTomolib/GPU libraries

description: This is an archive containing real data for testing methods of HTTomoLib and HTTomoLibGPU packages. Also see Python scripts and images. 



Data description:


I12 Beamline data




Dataset file
Information
Data charachteristics
Notes


i12_dataset1.npz (119647.nxs)
180-degrees scan of a sandstone rock


Data dimensions [1801, 50, 2560] as [angles, detY, detX], flats [50, 50, 2560] and darks are [20, 50, 2560]. Data type is uint16.

The resolution of the sample is well-defined and the sample is fully within the field of view (FOV). This provides some freedom for experimentation using various preprocesing and reconstruction methods.


i12_dataset2.npz (146344.nxs)
180-degrees scan


Data dimensions [2050, 50, 2560] as [angles, detY, detX], flats and darks are [51, 50, 2560]. Data type is uint16.



The sample is larger than FoV and noisy. VoCentering method to find the centre of rotation can be tested on this data.





i12_dataset3.npz (119647.nxs)

180-degrees scan of a sandstone rock


projections, darks and flats are [2050, 2560] as [detY, detX]. Data type is uint16.

This data is suitable to test the centering method based on the phase cross-correlation


i12_dataset4.npz (68067.nxs)
180-degrees scan
Data dimensions [2050, 30, 2560] as [angles, detY, detX], flats [50, 30, 2560] and darks are [20, 30, 2560]. Data type is uint16.
This data is well suitable for testing stripe (ring) removal artefacts and is a part of this dataset. 


i12_dataset5.npz (162289.nxs)
360-degrees scan
Data dimensions [3601, 15, 2560] as [angles, detY, detX], flats [101, 15, 2560] and darks are [101, 15, 2560]. Data type is uint16.
360 degrees scan with the left rotation. Testing 360 to 180 conversion methods.




I13 Beamline data




Dataset file
Information
Data charachteristics
Notes




i13_dataset1.npz (179623.nxs)

360-degrees scan of some biological sample


Projection data dimensions [6001, 10, 2560] as [angles, detY, detX], flats [40, 10, 2560] and darks are [40, 10, 2560]. Data type is uint16.

This is a 360-degrees scan than needs to be converted into traditional 180-degrees data. The stitched data enlarges the FoV of the detector while reduced the angular dimension.


i13_dataset2.npz (179468.nxs)
180-degrees scan of some biological sample.


Projection data dimensions [2501, 10, 2560] as [angles, detY, detX], flats [40, 10, 2560] and darks are [40, 10, 2560]. Data type is uint16.

A well defined resolution for this biological sample.


i13_dataset3.npz (180622.nxs)
360-degrees scan


Projection data dimensions [6001, 3, 2560] as [angles, detY, detX], flats [40, 3, 2560] and darks are [40, 3, 2560]. Data type is uint16.

This is a 360-degrees scan than needs to be converted into traditional 180-degrees data. The stitched data enlarges the FoV of the detector, while reduced the angular dimension. 




K11 Beamline data




Dataset file
Information
Data charachteristics
Notes


k11_dataset1.npz (k11-37101)
180-degrees scan of some soil/rock sample.
Projection data dimensions [4001, 10, 2560] as [angles, detY, detX], flats [100, 10, 2560] and darks are [100, 10, 2560]. Data type is uint16.
The sample is within FOV.




Simulated data




Dataset file
Information
Data charachteristics
Notes


geant4_dataset1.npz
Geant4 simulated tomographic dataset in 180-degrees parallel-beam. 


Data dimensions [360, 540, 640] as [angles, detY, detX], flats and darks are [20, 50, 2560]. Data type is uint16.

The data is perfectly centered and within FOV. Various reconstruction methods can be tested, direct and iterative.


synth_tomophantom1.npz


TomoPhantom simulated data of 3d Shepp-Logan with noise and stripe artefacts in 180-degrees parallel beam



Data dimensions [400, 314, 600] as [detY, angles, detX], data type is float32.

The data is perfectly centered and normalised with negative log taken. Quite a significant number of stripe artefacts present.