cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/ggba-yy81
title: IEEE 30-bus,118-bus,300-bus dataset for learning for unit commitment

description: The dataset contains IEEE 30-bus, 118-bus, 300-bus dataset we generated for learning for unit commitment. The dataset consists of data from both normal and extended time scales, with a total time span of one year. A data point is defined as the load demand for each period and the on/off status of the units at that moment. This dataset can be used to train a neural network to learn the mapping from load demand information to the on/off status of the units.
DOI: 10.6084/m9.figshare.27261906
title: Carbon budget of salt marshes in the Yellow River estuary

description: Taking the Yellow River estuary as a case, we quantified carbon budget of this blue carbon ecosystem using a net ecosystem carbon framework.
DOI: 10.6084/m9.figshare.27261906.v1
title: Carbon budget of salt marshes in the Yellow River estuary

description: Taking the Yellow River estuary as a case, we quantified carbon budget of this blue carbon ecosystem using a net ecosystem carbon framework.
DOI: 10.15468/dl.g98pg7
title: Occurrence Download

description: A dataset containing 18905 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Solenopsis invicta Buren, 1972)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18905 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022919-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/vtvmrzs9ch.2
title: Dataset of the performance of Ov16 RDTs versus skin snip microscopy and Ov16 ELISA, Gabon, 2015

description: Skin snip biopsies remain the gold standard for the diagnosis of active infection with Onchocerca volvulus. However, in low-prevalence settings, such as after several rounds of mass drug administration of ivermectin, the sensitivity of skin snipping is low, and the procedure is poorly tolerated.
Detection of Ov16 IgG4 antibodies from whole blood or dried blood spots (DBS) via rapid diagnostic test (RDT) or enzyme linked immunosorbent assay (ELISA), respectively, may therefore provide a more sensitive tool for the assessment of elimination (interruption) of transmission (EoT). RDTs require little training and resources to deploy and are therefore favoured by policy makers in Lower-Middle Income Countries (LMICs).
This dataset was compiled from individual-based surveys conducted across 67 villages in Gabon in 2015, aiming to compare the performance of skin snipping versus that of Ov16 RDTs and ELISAs.
Gabon had not received MDA but features many implementation units (IU) with hypoendemic (&lt;35% microfilarial prevalence) transmission. Local healthcare centres conducted the surveys. The initial participant pool totaled 5,829 individuals, with a median age of 30 years (Interquartile Range (IQR): 11-55 years).
Skin snips were obtained from 4,350 individuals (sheet 1), and RDTs were performed on blood samples collected from 4,257 individuals.
337 individuals (8%) gave a positive skin snip, with 383 individuals (9%) recording a positive Ov16 RDT. Of these, 174 individuals tested positive in both tests, giving the RDT an overall sensitivity of 52% and specificity of 95%.
Sheet 2 shows the data aggregated at the village level. Sheet 3 shows the Ov16 ELISA data. Horse radish peroxidase (HRP) Ov16 ELISAs were conducted on DBS in 58 (87%) of the 67 villages. A total of 3,012 individuals underwent ELISA testing, producing 348 (12%) Ov16 positive results. 
These data highlight, that whilst broadly efficacious, there is a need for caution on the reliance of RDTs in determination of EoT and furthers calls for the development of a novel RDT, with a diagnostic profile providing higher sensitivity and specificity values.
DOI: 10.34770/g03g-qd76
title: Full-wave simulations on helicon and parasitic excitation of slow waves near the edge plasma

description: Full-wave simulations of helicon and slow mode waves in DIII-D have been
 conducted using the Petra-M simulation code. The manuscript investigates
 the effect of misalignment of the Faraday screen and electron density in
 the scrape-off layer on the excitation and propagation of fast helicon and
 slow mode waves.
DOI: 10.5066/p9izdq7l
title: Water temperature data in the Milwaukee Estuary of Lake Michigan, Milwaukee County, Wisconsin

description: This dataset contains water temperature data collected by boat tow on August 30, 2019 between approximately 8:00 AM and 12:15 PM Central Standard Time (CST) in the Milwaukee Estuary of Lake Michigan. The data includes measured water temperatures, depth of collection, water column depth, time of collection, and geospatial coordinates. The objective of this data collection was to produce longitudinal temperature profiles for analyses of water temperature fluctuation in the estuary in order to examine thermal interaction between the lake and river influences.
DOI: 10.5281/zenodo.12658214
title: Video-Audio Neural Network Ensemble For Comprehensive Screening Of Autism Spectrum Disorder in Young Children (Openpose ADOS Dataset)

description: Here, we share a de-identify subsample of the data used in the research article, that will allow interested scientists to test the shared code, as well as, develop alternatives for achieving better prediction accuracy. We have prepared a subsample of pose estimation videos for the first 10 minutes of ADOS examination videos for each of the 160 children including in the current study  (80 ASD and 80 TD, 80 Training set and 80 Testing set).

With this subset of the full dataset, our trained model achieved an accuracy of 68.75% over 80 videos (40 ASD & 40 TD) by training the Visual Geometry Group 16 Long short term memory recurrent neural network (VGG16 LSTM RNN) over 80 training videos (40 ASD & 40 TD) at 64 batch size and 120 epochs.
DOI: 10.6084/m9.figshare.27142608
title: Supplementary Material for: Next-generation integrated sequencing identifies poor prognostic factors in patients with MYD88-mutated chronic lymphocytic leukemia in Taiwan

description: Introduction: Chronic lymphocytic leukemia (CLL) is the most common type of leukemia in the western countries and is very rare in Asia. Methods: Peripheral blood or bone marrow mononuclear cells obtained at initial diagnosis from 215 patients with CLL were analyzed by using next-generation sequencing to investigate the ethnic differences in genetic abnormalities. Results: Whole-genome sequencing and whole-exome sequencing analyses on 30 cases showed that 9 genes, including IGLL5, MYD88, TCHH, DSCAM, AXDND1, BICRA, KMT2D, MYT1L, RBM43 were more frequently mutated in our Taiwanese cohort compared with those of the western cohorts. IGLL5, MYD88, and KMT2D genes were further analyzed by targeted sequencing in another 185 CLL patients, unravelling frequencies of 29.3%, 20.9%, and 15.0%, respectively. The most frequent positional mutation of MYD88 was V217F (26/45, 57.8%), followed by L265P (9/45, 20.0%). MYD88 mutations were significantly associated with IGLL5 mutations (P = 0.0004), mutated IGHV (P &lt; 0.0001) and 13q deletion (P = 0.0164). CLL patients with co-occurrence of MYD88 mutations with KMT2D or/and IGLL5 mutations were associated with a significantly inferior survival compared to those with MYD88 mutation alone (not reached vs. 131.8 months, P = 0.007). In multivariate analysis, MYD88 mutation without KMT2D or IGLL5 mutations was an independently favorable predictor. Conclusions: IGLL5, MYD88, and KMT2D mutations were enriched in Taiwanese CLL, and co-occurrence of MYD88 mutations with KMT2D or/and IGLL5 mutations was associated with a poorer prognosis.
DOI: 10.6084/m9.figshare.27144636
title: Supplementary Material for: Exploring the Impact of Sarcopenia on Mortality in Breast Cancer Patients: A Comprehensive Systematic Review and Meta-Analysis

description: Background: This study assesses the frequency of sarcopenia in patients with breast cancer (BC) and its association with mortality rates. 
Methods: An all-encompassing search across (PubMed, Scopus, Web of Science, and CINAHL) was done, to identify studies, published until August 2023, that report data on sarcopenia and mortality in BC patients. A meta-analysis was then done using a random-effects model.
Results: Out of 989 initially identified potential studies, 19 met inclusion criteria. Analysis of 15 studies showed a rate of sarcopenia of 38% (95% CI 29-48%), with moderate heterogeneity (I2 = 25.8%). Sarcopenia was linked to increased mortality risk in BC patients across 16 studies (HR: 1.77, CI: 1.35 – 2.32, p = &lt;0.001) with both shorter and longer follow-up periods. Similarly, mortality risks were significantly higher in metastatic (HR: 1.52, CI: 1.14 – 2.03, p = 0.004) and non-metastatic (HR: 2.55, CI: 1.66 – 3.93, p &lt; 0.001) BC patients with sarcopenia.
Conclusion: Our analysis demonstrates a substantial prevalence of sarcopenia in BC patients. Importantly, sarcopenia was significantly linked to elevated risk of mortality in this population. Subgroup analyses, stratified by follow-up periods and disease stage, consistently reveal increased mortality risks associated with sarcopenia, underscoring its clinical relevance in both short- and long-term patient outcomes. Our findings further strengthen the need to recognize and address sarcopenia as a critical factor in BC management and prognosis.
DOI: 10.5281/zenodo.10037256
title: Data for "Photon-mediated long-range coupling of two Andreev pair qubits"

description: Data for the manuscript "Photon-mediated long-range coupling of two Andreev pair qubits"
DOI: 10.5281/zenodo.13327244
title: Neural pathways and computations that achieve stable contrast processing tuned to natural scenes

description: Gur et al. 2024 database

Source data of the paper Gür et al. 2024, “Neural pathways and computations that achieve stable contrast processing tuned to natural scenes”, Nature Communications. This work contains an analysis of post-receptor luminance gain in the Drosophila visual system, focusing on the circuitry and algorithms for implementation of rapid luminance gain control.

All data can be analyzed using the code provided in the Github repository: https://github.com/silieslab/Gur-etal-2024. Please go to the “Readme” file in the repository for how to use the code.

Raw data

All raw data is located in the folder “raw_data”. "Readme" file located in the code repository will guide you on how to analyze all data.

Processed data

All processed data is located in the folder “processed_data”. "Readme" file located in the code repository will guide you on how to analyze all data.

- 2p_imaging_python_pickle: Processed data stored as .pickle files. - Dm12_Figure7_Mat_files: Processed data for Dm12 imaging and optogenetics experiments presented in Figure 7 stored as .mat files.- EM_data: Processed data for EM analysis done in Figure 7.- Figure 6 Tm9 flpSTOP: tdTomato expression data for Figure 6 Tm9 flpSTOP experiments.- Figure S5 Tm1 flpSTOP: tdTomato expression data for FigureS5 Tm1 flpSTOP experiments.
DOI: 10.5281/zenodo.7963531
title: PDAC-SMI transcript locations

description: This record contains the spatial locations of transcripts in the PDAC-SMI data.
DOI: 10.60520/ieda/113223
title: Major and trace element data of volcanic glass shards from ash beds drilled at ODP Site 882; trace element and Pb-Nd isotope analyses of separated fresh volcanic particles from ODP Site 882 ash beds

description: This dataset presents major and trace elements of single volcanic glass shards, and trace element and Pb-Nd isotope analysis from volcanic ash particles from ODP Site 822. Volcanic glasses were analyzed by EMPA at American Museum of Natural History and by laser-ablation ICP-MS at the Institute of Earth Sciences, Academia Sinica in Taipei (Taiwan). Trace element data were obtained by solution ICP-MS at the UNAM Centro de Geociencias (CGEO) in Queretaro (Mexico). The chemical separation for Pb and Nd was done at the UNAM Centro de Geociencias (CGEO) in Queretaro (Mexico), whereas the Pb and Nd isotope analyses were performed by MC-ICPMS at Miami University in Oxford (Ohio).
description: Straub, S.M., Reilly, B.T., Raymo, M.E., Gomez Tuena, A., Wang, K.L., Widom, E., Kuentz, D., Arculus, R.J., 2024. Patterns of Plio-Pleistocene Ice Volume Variability Recorded by the Large-Magnitude Explosive Eruptions from the Kamchatka-Kurile Volcanic Arc. Geochem Geophys Geosys.
DOI: 10.6084/m9.figshare.25283140
title: Supplementary Material for: Human endogenous retroviruses (HERVs) in breast cancer: altered expression pattern implicates divergent roles in carcinogenesis

description: Introduction
Breast cancer is the most common cancer and the leading cause of cancer death in women. Recent research indicates that human endogenous retroviruses (HERVs) may be linked to carcinogenesis, but the data remain controversial.
Methods
HERVs´ expression was evaluated to show the differences between breast cancer and control samples, and their associations with clinicopathological parameters. Gene expression of 12 HERVs, i.e. ERVE-4, ERVW-1, ERVFRD-1, ERVV-1, ERV3-1, ERVH48-1, ERVMER34-1, ERVK7, ERVK13-1, ERVK11-1, ERVK3-1 and HCP5 was analyzed by qPCR and/or TCGA datasets for breast cancer. 
Results
ERV3-1, ERVFRD-1, ERVH48-1 and ERVW-1 provided data to support their tumor suppressor roles in breast cancer. ERV3-1 evinced the best performing diagnostic data based on qPCR, i.e. AUC: 0.819 (p &lt;0.0001), sensitivity of 72.41%, and specificity of 89.66%. Lower levels of ERV3-1 were noted in advanced stage and higher grades, and significant negative association was found in relation to Ki-67 levels. Oncogenic roles may be inferred for ERVK13-1, ERVV-1, and ERVMER34-1. Data for ERVK-7, ERVE-4, ERVK11-1 and HCP5 remain inconclusive.
Conclusion
Differential HERVs expression may be applicable to evaluate novel biomarkers for breast cancer. However, more research is needed to reveal their real clinical impact, the biological roles and regulatory mechanisms in breast carcinogenesis.
DOI: 10.6084/m9.figshare.25399024
title: data(Impacts of elevated anthropogenic emissions on physicochemical characteristic of BC-containing particles in the Tibet Plateau).rar

description: Observational data on the physicochemical properties of black carbon in the Tibetan Plateau
DOI: 10.18462/iir.nh3-co2.2021.0035
title: Current state and market trends in technologies with natural refrigerants.
DOI: 10.25790/bml0cm.49
title: Neurodevelopmental MRI Database
DOI: 10.34943/6188f02e-f949-401b-94b0-6e139569b86f
title: Patricia Bay Echosounder, Bioacoustic Deployed 2016-10-06

description: The ASL AZFP Echosounder 55121 was deployed on 2016-10-06 at Patricia Bay. Patricia Bay is located in the Saanich Inlet, on the southern tip of Vancouver Island. This device is a Echosounder, Bioacoustic. Echosounders are used to measure acoustic backscatter as a proxy for detecting zooplankton, fish, bubbles or other particles in the water-column. An echosounder has one or more transducers which emit acoustic pulses at a particular frequency. When the pulses strike animals or other objects in the water, echoes are produced, which can be detected and converted by the transducers back into electrical signals. Software is then used to determine distances, sizes, concentrations and movements of organisms and other objects in the water. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/c8e61984-08c6-4381-ac72-3f6d846bcf40
title: Patricia Bay Echosounder, Bioacoustic Deployed 2019-03-10

description: The ASL AZFP Echosounder 55167 was deployed on 2019-03-10 at Patricia Bay. Patricia Bay is located in the Saanich Inlet, on the southern tip of Vancouver Island. This device is a Echosounder, Bioacoustic. Echosounders are used to measure acoustic backscatter as a proxy for detecting zooplankton, fish, bubbles or other particles in the water-column. An echosounder has one or more transducers which emit acoustic pulses at a particular frequency. When the pulses strike animals or other objects in the water, echoes are produced, which can be detected and converted by the transducers back into electrical signals. Software is then used to determine distances, sizes, concentrations and movements of organisms and other objects in the water. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.11504983
title: An experimental dataset to explore the size ratio impact on an intruder segregating in bedload transport

description: This repository gathers :



The treated data used in the article "Exploring the size ratio impact on an intruder segregating in bedload transport" from Dedieu B., Rousseau H., Frey P. and Chauchat J. in Physical Review of Fluids (DOI: 10.1103/PhysRevFluids.9.104302),

Some re-computed data from the experiments of Rousseau H. et al.(2022) in csv format,

A python3 package codes used to load the data.


Explanations on how to use the codes and how the data are organized can be found in the README.md.

Feel free to contact the authors if you need more information or wish to access the raw image data.
DOI: 10.6084/m9.figshare.26797810
title: Supplementary Material for: Working Under Pressure: Scleroderma Presenting with Bilateral Exudative Retinal Detachment in the Context of Scleroderma Renal Crisis – A Case Report

description: This is an observational case report to detail a novel case of scleroderma renal crisis presenting as bilateral exudative retinal detachments in a patient with newly diagnosed systemic sclerosis. An otherwise healthy 58-year-old female presented primarily with vision complaints and was found to have malignant hypertension (230/120 mmHg) and bilateral exudative retinal detachment on dilated fundus examination and macular OCT scan. Further history revealed sclerodactyly, mild dysphagia, and dyspnea. She was diagnosed with diffuse Systemic Sclerosis and Sjogren's Syndrome complicated by an episode of scleroderma renal crisis based on initial medical workup. She was admitted to intensive care for management of refractory hypertension with IV antihypertensive therapy. Three-months after treatment, her visual symptoms and ocular findings resolved. The presence of exudative retinal detachment among other signs of hypertensive retinopathy warrants thorough systemic screening for underlying causes of malignant hypertension, including systemic sclerosis. Treatment of the underlying disease with urgent antihypertensive therapy resolved the exudative retinal detachments and restored vision in the case of a scleroderma renal crisis.
DOI: 10.1594/pangaea.920596
title: Last Glacial Maximum SST proxy collection and data assimilation

description: A collection of geochemical SST proxy from the Last Glacial Maximum (23-19 ka) and the Late Holocene (4-0 ka) and results from data assimilation with iCESM 1.2. Includes raw proxy data from the LGM (Tierney2020_LGMProxyData.csv) and LH (Tierney2020_LHProxyData.csv) time slices, with calibrated absolute SSTs; "paired" (data in the same location) proxies with calibrated SST anomalies (Tierney2020_ProxyDataPaired.csv); a 5˚ x 5˚ gridded product of the paired proxies in netCDF format (Tierney2020_ProxyData_5x5_deltaSST.nc); and the results from the DA in netCDF format. The DA results are split into atmospheric variables (SAT, d18O of precipitation; Tierney2020_DA_atm.nc) and oceanic variables (SST, SSS, and d18O of seawater; Tierney2020_DA_ocn.nc). The ocean data are provided on their native tripolar grid (Tierney2020_DA_ocn.nc) as well as a 1 x 1 regridded version (Tierney2020_DA_ocn_regrid.nc).
DOI: 10.21227/h24t0v
title: Mobile Brain-Body Imaging during Indoor Treadmill Walking and Outdoor Overground Walking with a Visual Search Task
DOI: 10.34943/193e0e4b-7802-4d27-b9c2-44132e774f1b
title: Patricia Bay Echosounder, Bioacoustic Deployed 2019-09-12

description: The ASL AZFP Echosounder 55167 was deployed on 2019-09-12 at Patricia Bay. Patricia Bay is located in the Saanich Inlet, on the southern tip of Vancouver Island. This device is a Echosounder, Bioacoustic. Echosounders are used to measure acoustic backscatter as a proxy for detecting zooplankton, fish, bubbles or other particles in the water-column. An echosounder has one or more transducers which emit acoustic pulses at a particular frequency. When the pulses strike animals or other objects in the water, echoes are produced, which can be detected and converted by the transducers back into electrical signals. Software is then used to determine distances, sizes, concentrations and movements of organisms and other objects in the water. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/32eb1f77-334e-4ac9-a4a7-bbd4d14413da
title: Patricia Bay Echosounder, Bioacoustic Deployed 2018-09-30

description: The ASL AZFP Echosounder 55167 was deployed on 2018-09-30 at Patricia Bay. Patricia Bay is located in the Saanich Inlet, on the southern tip of Vancouver Island. This device is a Echosounder, Bioacoustic. Echosounders are used to measure acoustic backscatter as a proxy for detecting zooplankton, fish, bubbles or other particles in the water-column. An echosounder has one or more transducers which emit acoustic pulses at a particular frequency. When the pulses strike animals or other objects in the water, echoes are produced, which can be detected and converted by the transducers back into electrical signals. Software is then used to determine distances, sizes, concentrations and movements of organisms and other objects in the water. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.