cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j04748v4
title: CIL:8476, Rattus, multipolar neuron. In Cell Image Library

description: Preparation: formaldehyde fixed tissue; detergent permeabilized
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: primary antibody plus labeled secondary antibody
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements
description: Development of axon and dendritic arbors in cultured hippocampal neurons after 2 days in vitro. At this timepoint, many, but not all cells are polarized, evidenced by the absence of a long, slender axon. MAP2 staining (red) is becoming segregated to the dendrites, while microtubule staining (green) reveals both the axons and dendrites in the field of view. Nonneuronal cells (e.g. glia) are infrequent, but may also be present in this preparation. 

Detailed methods: Embryonic rat hippocampal neurons were prepared as previously described (see Kaech and Banker, 2006, Nat Protoc). Cells were prepared for fluorescent staining as previously described (Withers and Banker, 1998, in Culturing Nerve Cells, MIT Press). Briefly, cells were fixed (4% formaldehyde, 4% sucrose in phosphate buffered saline, pH 7.4), permeabilized with 0.25% Triton and immunostained for tubulin (monoclonal DM1A, from Sigma with Alexa 488 conjugated secondary, excitation, 494, emission, 519 [Invitrogen, Molecular Probes]) and MAP2 (polyclonal Ab266, from S. Halpain with d549 conjugated secondary, excitation, 555, emission, 568, Jackson Immunoresearch). Images were acquired with a Leica DMRA microscope with a 40X (HCX PL APO, NA 1.25) lens, Photometrics CoolSnap ES CCD camera and MetaMorph software. This merged image was generated with the MetaMorph color combine function.
DOI: 10.6075/j0z036s2
title: CIL:45984, Homo sapiens. In Cell Image Library

description: Gustafsdottir et al. (doi:10.1371/journal.pone.0080999) have developed a multiplex cytological profiling assay that "paints the cell" with as many fluorescent markers as possible without compromising our ability to extract rich, quantitative profiles in high throughput. The assay detects seven major cellular components. In a pilot screen of bioactive compounds, the assay detected a range of cellular phenotypes and it clustered compounds with similar annotated protein targets or chemical structure based on cytological profiles. The results demonstrate that the assay captures subtle patterns in the combination of morphological labels, thereby detecting the effects of chemical compounds even though their targets are not stained directly. This image-based assay provides an unbiased approach to characterize compound- and disease-associated cell states to support future probe discovery.

Using the cell-painting assay, the Broad Institute has assembled a reference dataset of profiles for U2OS osteosarcoma cells treated with ~30,000 compounds. The compound collection includes DOS-derived compounds (20,000), as well as chemically diverse MLI compounds with biologically diverse performance identified through analysis of PubChem (10,000), and known bioactive compounds to serve as landmarks (2,500). The DOS compounds consist of structurally diverse and stereochemically rich compounds with structures distinct from the current MLSMR. The compound collection also includes 267 distinct compounds nominated by MLPCN Centers from projects for which the Centers would like to identify new chemical series with similar activities.

The experiment consists of 413 microtiter plates. Each plate has 384 wells. Each well has 9 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.
description: Plate 26006 - Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This image set provides a basis for testing image-based profiling methods wrt. to their ability to distinguish the effects of small molecules.
 
Images
The images are of U2OS cells treated with each of 1600 known bioactive compounds and labeled with six labels that characterize seven organelles (the .cell-painting. assay).
 
This pilot experiment consists of 20 plates. Each plate has 384 wells and each well has 9 fields of view for a total of 69,120 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale image file, so there are 345,600 image files in 16-bit TIFF format.
DOI: 10.5281/zenodo.17378364
title: Notas de leitura do processo "Construção de um Bairro em Pinhão - Fase de C.P.E. - 6 habitações [1973-1975]"

description: Notas de leitura do processo "Construção de um Bairro em Pinhão - Fase de C.P.E. - 6 habitações [1973-1975]" existente no arquivo do Património Cultural, I.P., Arquivo do Instituto da Habitação e da Reabilitação Urbana, em Sacavém.

Registo efetuado em agosto de 2023 no âmbito do projeto de investigação ReARQ.IB – Built Environment Knowledge for Resilient, Sustainable Communities: Understanding Everyday Modern Architecture and Urban Design in the Iberian Peninsula (1939-1985) (ERC GA949686) e publicado online emhttps://arquitecturaaqui.eu/pt/documentacao/processos/@id/4507.

Dados exportados da plataforma Arquitectura Aqui (https://arquitecturaaqui.eu), repositório do referido projeto, em outubro de 2025.
DOI: 10.5281/zenodo.17378365
title: Notas de leitura do processo "Construção de um Bairro em Pinhão - Fase de C.P.E. - 6 habitações [1973-1975]"

description: Notas de leitura do processo "Construção de um Bairro em Pinhão - Fase de C.P.E. - 6 habitações [1973-1975]" existente no arquivo do Património Cultural, I.P., Arquivo do Instituto da Habitação e da Reabilitação Urbana, em Sacavém.

Registo efetuado em agosto de 2023 no âmbito do projeto de investigação ReARQ.IB – Built Environment Knowledge for Resilient, Sustainable Communities: Understanding Everyday Modern Architecture and Urban Design in the Iberian Peninsula (1939-1985) (ERC GA949686) e publicado online emhttps://arquitecturaaqui.eu/pt/documentacao/processos/@id/4507.

Dados exportados da plataforma Arquitectura Aqui (https://arquitecturaaqui.eu), repositório do referido projeto, em outubro de 2025.
DOI: 10.15468/dl.6rx67j
title: Occurrence Download

description: A dataset containing 725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((8.63275 47.30915,8.72918 47.30915,8.72918 47.38423,8.63275 47.38423,8.63275 47.30915))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is 64ee55c9-570a-42af-b7da-3f13c6b4e5a9",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 725 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009693-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frjhzg
title: Occurrence Download

description: A dataset containing 85801 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Picea koraiensis, Larix gmelinii, Metasequoia glyptostroboides, Juncus effusus, Juncus wallichianus, Saccharum spontaneum, Saccharum arundinaceum, Sorghum halepense, Phragmites australis, Arundo donax, Miscanthus sinensis, Miscanthus floridulus, Miscanthus lutarioriparius, Spartina alterniflora, Spartina anglica, Phalaris arundinacea, Bambusa chungii, Chrysopogon zizanioides, Pistia stratiotes, Amorphophallus konjac, Typha angustifolia, Typha orientalis, Typha przewalskii, Typha latifolia, Typha laxmannii, Carex lasiocarpa, Carex rhynchophysa, Carex scabrifolia, Carex vesicaria, Carex lanceolata, Eriophorum gracile, Pandanus tectorius, Nypa fruticans, Cocos nucifera, Salix matsudana, Salix koreensis, Salix arbutifolia, Populus koreana, Populus ussuriensis, Populus purdomii, Populus adenopoda, Populus przewalskii, Populus pruinosa, Populus simonii, Ficus variolosa, Gonostegia hirta, Debregeasia orientalis, Debregeasia longifolia, Urtica angustifolia, Urtica cannabina, Urtica laetevirens, Boehmeria japonica, Boehmeria, Boehmeria penduliflora, Boehmeria macrophylla scabrella, Oreocnide frutescens, Oreocnide obovata, Maoutia puya, Glycine soja, Sida szechuensis, Heritiera littoralis, Hibiscus tiliaceus, Metaplexis japonica, Apocynum pictum, Apocynum venetum, Trachelospermum axillare, Sinoadina racemosa, Adina rubella, Buddleja officinalis, Artemisia argyi, Barringtonia racemosa, Urtica triangularis, Achnatherum sibiricum, Setaria plicata, Populus suaveolens, Salix chaenomeloides, Salix sinopurpurea, Pterocarya stenoptera, Pterocarya hupehensis, Alnus nepalensis, Alnus trabeculosa, Ulmus davidiana japonica, Broussonetia papyrifera, Sesbania cannabina, Amorpha fruticosa, Bruguiera gymnorhiza, Vitex rotundifolia, Adina pilulifera, Cephalanthus tetrandrus, Pennisetum flaccidum, Miscanthus sacchariflorus, Achnatherum pekinense, Leymus chinensis, Leymus secalinus, Imperata cylindrica, Oryza sativa, Carex meyeriana, Carex maximowiczii, Scirpus filipes, Schoenoplectus mucronatus robustus, Bolboschoenus yagara, Schoenoplectus tabernaemontani, Juncus setchuensis, Juncus prismatocarpus, Iris ensata, Thysanolaena latifolia)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Country is one of (China, Chinese Taipei, Hong Kong, Macao)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1949"
 ]
}

 The dataset includes 85801 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009678-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24400/170160/sagsa_ggm_gab_1month_rl0005
title: Oceanic dealiasing GAB monthly
DOI: 10.15468/dl.f9jygd
title: Occurrence Download

description: A dataset containing 5576 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Okanagana"
 ]
}

 The dataset includes 5576 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009694-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25420/britishmuseum.30468488
title: Making a cooking pot in Ki’Nonh village : Roughing out and reforming on wet clay (partial process)

description: annotation for file 2020SG03-A20-0937
DOI: 10.25420/britishmuseum.30468506
title: Making a bowl in Ki’Nonh village : Roughing out and reforming on wet clay (partial process)

description: annotation for file 2020SG03-A20-0938
DOI: 10.25420/britishmuseum.30468506.v1
title: Making a bowl in Ki’Nonh village : Roughing out and reforming on wet clay (partial process)

description: annotation for file 2020SG03-A20-0938
DOI: 10.25420/britishmuseum.30468509
title: Making a bowl in Ki’Nonh village : Roughing out and reforming on wet clay (partial process)

description: annotation for file 2020SG03-A20-0938
DOI: 10.25420/britishmuseum.30468509.v1
title: Making a bowl in Ki’Nonh village : Roughing out and reforming on wet clay (partial process)

description: annotation for file 2020SG03-A20-0938
DOI: 10.25420/britishmuseum.30468485
title: Making a cooking pot in Ki’Nonh village : Roughing out and reforming on wet clay (partial process)

description: annotation for file 2020SG03-A20-0937
DOI: 10.25420/britishmuseum.30468485.v1
title: Making a cooking pot in Ki’Nonh village : Roughing out and reforming on wet clay (partial process)

description: annotation for file 2020SG03-A20-0937
DOI: 10.25420/britishmuseum.30468488.v1
title: Making a cooking pot in Ki’Nonh village : Roughing out and reforming on wet clay (partial process)

description: annotation for file 2020SG03-A20-0937
DOI: 10.25420/britishmuseum.30468473
title: Making a small cooking pot in Ki’Nonh village : Roughing out and reforming on wet clay

description: annotation for file 2020SG03-A20-0936
DOI: 10.25420/britishmuseum.30468473.v1
title: Making a small cooking pot in Ki’Nonh village : Roughing out and reforming on wet clay

description: annotation for file 2020SG03-A20-0936
DOI: 10.25420/britishmuseum.30468476
title: Making a small cooking pot in Ki’Nonh village : Roughing out and reforming on wet clay

description: annotation for file 2020SG03-A20-0936
DOI: 10.25420/britishmuseum.30468476.v1
title: Making a small cooking pot in Ki’Nonh village : Roughing out and reforming on wet clay

description: annotation for file 2020SG03-A20-0936
DOI: 10.25420/britishmuseum.30468419
title: Making a pestle in Ki’Nonh village

description: annotation for file 2020SG03-A62-0925
DOI: 10.25420/britishmuseum.30468416
title: Making a pestle in Ki’Nonh village

description: annotation for file 2020SG03-A62-0925
DOI: 10.25420/britishmuseum.30468416.v1
title: Making a pestle in Ki’Nonh village

description: annotation for file 2020SG03-A62-0925
DOI: 10.25420/britishmuseum.30468419.v1
title: Making a pestle in Ki’Nonh village

description: annotation for file 2020SG03-A62-0925
DOI: 10.25420/britishmuseum.30468383
title: Name of the small handle in Katu language (Ki’Nonh village)

description: Hốih Tiến and Bling Thị Thuáh says the name of the small round handles commonly found on large storage pots, like a pưah. They are called "kitar".
DOI: 10.25420/britishmuseum.30468383.v1
title: Name of the small handle in Katu language (Ki’Nonh village)

description: Hốih Tiến and Bling Thị Thuáh says the name of the small round handles commonly found on large storage pots, like a pưah. They are called "kitar".
DOI: 10.25420/britishmuseum.30468389
title: Name of the action of pounding clay with a pestle in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the action of pounding clay with a pestle : it is called “klo”.
DOI: 10.25420/britishmuseum.30468389.v1
title: Name of the action of pounding clay with a pestle in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the action of pounding clay with a pestle : it is called “klo”.
DOI: 10.25420/britishmuseum.30468392
title: Name of the action of forming the rim with a banana leaf in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the action of forming the rim with a banana leaf : it is called “tor vung”.
DOI: 10.25420/britishmuseum.30468392.v1
title: Name of the action of forming the rim with a banana leaf in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the action of forming the rim with a banana leaf : it is called “tor vung”.
DOI: 10.24400/170160/sagsa_ggm_svd_10days_rl0005
title: Geopotential solution Singular Value Decomposition 10 Days
DOI: 10.25420/britishmuseum.30468377
title: Name of the pestle in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the pestle used to pound the clay : it is called “a ndré”.
DOI: 10.25420/britishmuseum.30468380
title: Name of the decoration in Katu language (Ki’Nonh village)

description: Hốih Tiến and Bling Thị Thuáh says the name of the decoration used on pottery : it is called “karơn”. This decoration consists of incised dots or horizontal lines, made using a stick.
DOI: 10.25420/britishmuseum.30468386.v1
title: Name of the sugarcane Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the sugarcane used to smooth and form the pot during the preforming on wet clay : it is called “kataw”.
DOI: 10.25420/britishmuseum.30468368
title: Name of the scraper in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the scraper : it is called “kơté”. This tool is a thin slice of bamboo bend into a circle with both ends attached togther.
DOI: 10.25420/britishmuseum.30468368.v1
title: Name of the scraper in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the scraper : it is called “kơté”. This tool is a thin slice of bamboo bend into a circle with both ends attached togther.
DOI: 10.25420/britishmuseum.30468386
title: Name of the sugarcane Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the sugarcane used to smooth and form the pot during the preforming on wet clay : it is called “kataw”.
DOI: 10.25420/britishmuseum.30468374
title: Name of the specific bamboo used to make the scraper in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the bamboo used to make the scraper. “Am” is the generic term for a certain type of bamboo (Bambusa balcooa), “am sơri” is the name of a spieces of bamboo from that family, used to make the tool
DOI: 10.25420/britishmuseum.30468377.v1
title: Name of the pestle in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the pestle used to pound the clay : it is called “a ndré”.
DOI: 10.25420/britishmuseum.30468380.v1
title: Name of the decoration in Katu language (Ki’Nonh village)

description: Hốih Tiến and Bling Thị Thuáh says the name of the decoration used on pottery : it is called “karơn”. This decoration consists of incised dots or horizontal lines, made using a stick.
DOI: 10.25420/britishmuseum.30468374.v1
title: Name of the specific bamboo used to make the scraper in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the bamboo used to make the scraper. “Am” is the generic term for a certain type of bamboo (Bambusa balcooa), “am sơri” is the name of a spieces of bamboo from that family, used to make the tool
DOI: 10.25420/britishmuseum.30468371
title: Name of the banana leaf in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the banana flower leaf used to shape the rim of the pot : it is called “a jui”.
DOI: 10.25420/britishmuseum.30468371.v1
title: Name of the banana leaf in Katu language (Ki’Nonh village)

description: Hốih Tiến says the name of the banana flower leaf used to shape the rim of the pot : it is called “a jui”.
DOI: 10.5281/zenodo.17405444
title: SI-ternary-chalcogenides-genAI

description: This dataset includes all predicted ground-state structures of ternary chalcogenides generated using the Chemeleon generative model. The thermodynamic stability of each structure was assessed using the GRACE machine learning interatomic potential, with reference data obtained from the Materials Project (MP).

The JSON file contains the CIF filenames together with the corresponding MP-IDs of the identical structures identified in the Materials Project database, as determined using StructureMatcher in Pymatgen framework.
DOI: 10.5281/zenodo.17493022
title: SI-ternary-chalcogenides-genAI

description: This dataset includes all predicted ground-state structures of ternary chalcogenides generated using the Chemeleon generative model. The thermodynamic stability of each structure was assessed using the GRACE machine learning interatomic potential, with reference data obtained from the Materials Project (MP).

The JSON file contains the CIF filenames together with the corresponding MP-IDs of the identical structures identified in the Materials Project database, as determined using StructureMatcher in Pymatgen framework.
DOI: 10.6075/j079437m
title: CIL:45983, Homo sapiens. In Cell Image Library

description: Plate 26002 - Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This image set provides a basis for testing image-based profiling methods wrt. to their ability to distinguish the effects of small molecules.
 
Images
The images are of U2OS cells treated with each of 1600 known bioactive compounds and labeled with six labels that characterize seven organelles (the .cell-painting. assay).
 
This pilot experiment consists of 20 plates. Each plate has 384 wells and each well has 9 fields of view for a total of 69,120 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale image file, so there are 345,600 image files in 16-bit TIFF format.
description: Gustafsdottir et al. (doi:10.1371/journal.pone.0080999) have developed a multiplex cytological profiling assay that "paints the cell" with as many fluorescent markers as possible without compromising our ability to extract rich, quantitative profiles in high throughput. The assay detects seven major cellular components. In a pilot screen of bioactive compounds, the assay detected a range of cellular phenotypes and it clustered compounds with similar annotated protein targets or chemical structure based on cytological profiles. The results demonstrate that the assay captures subtle patterns in the combination of morphological labels, thereby detecting the effects of chemical compounds even though their targets are not stained directly. This image-based assay provides an unbiased approach to characterize compound- and disease-associated cell states to support future probe discovery.

Using the cell-painting assay, the Broad Institute has assembled a reference dataset of profiles for U2OS osteosarcoma cells treated with ~30,000 compounds. The compound collection includes DOS-derived compounds (20,000), as well as chemically diverse MLI compounds with biologically diverse performance identified through analysis of PubChem (10,000), and known bioactive compounds to serve as landmarks (2,500). The DOS compounds consist of structurally diverse and stereochemically rich compounds with structures distinct from the current MLSMR. The compound collection also includes 267 distinct compounds nominated by MLPCN Centers from projects for which the Centers would like to identify new chemical series with similar activities.

The experiment consists of 413 microtiter plates. Each plate has 384 wells. Each well has 9 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.