cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.18634414.v1
title: Teaching and assessment of clinical diagnostic reasoning in medical students

description: Teaching diagnostic reasoning and giving feedback has an important role in medical education. Clinicians who teach may recognise errors, but be unfamiliar with the terminology used to describe them, leading to a lack of consistent and useful student feedback. This prospective project evaluation study aimed to develop an examiner training package regarding errors in diagnostic reasoning, utilising consistent language and feedback tool, and report on diagnostic reasoning errors in second year medical students over the transition from preclinical to early clinical training at objective structured clinical exams (OSCEs). Likert questionnaire regarding examining, assessment and feedback pre- and post-training showed improvement in all measures, including examiner feedback confidence post training (<i>p</i> &lt; .001). Students (<i>n</i> = 235) within the cohort were examined at the first preclinical OSCE 12 weeks into the teaching year and 236 students at the end of year OSCE. A range of 0–6 diagnostic reasoning errors were reported for individual students. When comparing mean history station scores at the preclinical OSCE for students who were observed to have diagnostic reasoning errors, students with ‘<i>poor pattern recognition</i>’ had a 4.2% lower score than those without this error type (<i>p</i> = .04, 95% CI of difference .14, 8.32), while those with <i>‘unfocused data collection’</i> error had a station score 7.7% lower than those without this error (<i>p</i> &lt; .001, 95% CI of difference 3.50, 11.99). At the end of teaching year clinical OSCE, all common error types were associated with poorer performance. Error pattern shifted through the two longitudinal assessments, resulting in <i>‘poor pattern recognition’</i> having reduced and <i>‘too narrow’</i> and <i>‘premature closure’</i> increased rates. Incorporating the identification and feedback of common diagnostic reasoning errors into existing clinical assessments was feasible and easy to implement. Understanding, identifying and providing consistent feedback on common errors assists educators and could guide curriculum design.
DOI: 10.5281/zenodo.8354916
title: How is the nociceptive withdrawal reflex influenced by increasing doses of propofol in pigs?

description: The files contain the nocicpetive withdrawal reflex thresholds for each single pig and for each single day.<br> They have been recorded continuously (for more details see main text) from the beginning to the end of the experiment. Each Excel file is dedicated to one pig. In each Excel file, there are 3 worksheets that refer to each experimental day.<br> All the parameters recorded from the Dolosys have been reported (data are presented as downloaded from the device), namely: stimulus_no date time stimulus_intensity [mA] threshold [mA] imp_stim [ohm] imp_emg_red [ohm] imp_emg_black [ohm] imp_emg_white [ohm] noise_level threshold_reliability scoring_value scoring_cutoff_value noise_max [uV] noise_mean [uV] noise_sd [uV] reflex_max [uV] reflex_mean [uV] reflex_sd [uV] NRS noise_start [ms] noise_end [ms] reflex_start [ms] reflex_end [ms] measured_current [mA] measured_voltage [V]
description: A commercial device (PainTracker; Dolosys GmbH, Germany) was used to evaluate the nociceptive withdrawal reflex thresholds in pigs receiving increasing dosages of propofol. Specifically, two surface electrodes were placed over the common dorsal digital nerve for transcutaneous electrical stimulation, and three surface electrodes were placed over the tibialis cranialis muscle on the same limb for the recording of electromyographic (EMG) activity. The thresholds were recorded continuously for the whole duration of the experiment.
DOI: 10.5281/zenodo.8354915
title: How is the nociceptive withdrawal reflex influenced by increasing doses of propofol in pigs?

description: The files contain the nocicpetive withdrawal reflex thresholds for each single pig and for each single day.<br> They have been recorded continuously (for more details see main text) from the beginning to the end of the experiment. Each Excel file is dedicated to one pig. In each Excel file, there are 3 worksheets that refer to each experimental day.<br> All the parameters recorded from the Dolosys have been reported (data are presented as downloaded from the device), namely: stimulus_no date time stimulus_intensity [mA] threshold [mA] imp_stim [ohm] imp_emg_red [ohm] imp_emg_black [ohm] imp_emg_white [ohm] noise_level threshold_reliability scoring_value scoring_cutoff_value noise_max [uV] noise_mean [uV] noise_sd [uV] reflex_max [uV] reflex_mean [uV] reflex_sd [uV] NRS noise_start [ms] noise_end [ms] reflex_start [ms] reflex_end [ms] measured_current [mA] measured_voltage [V]
description: A commercial device (PainTracker; Dolosys GmbH, Germany) was used to evaluate the nociceptive withdrawal reflex thresholds in pigs receiving increasing dosages of propofol. Specifically, two surface electrodes were placed over the common dorsal digital nerve for transcutaneous electrical stimulation, and three surface electrodes were placed over the tibialis cranialis muscle on the same limb for the recording of electromyographic (EMG) activity. The thresholds were recorded continuously for the whole duration of the experiment.
DOI: 10.20351/29gd20230704
title: DOGMA Cruise, RV García del Cid

description: Oceanographic data acquired during the DOGMA Cruise (29GD20230704) on board the Research Vessel García del Cid 2023.
DOI: 10.34965/i10959
title: 20230331
DOI: 10.5281/zenodo.8369131
title: Alpha-frequency feedback to early visual cortex orchestrates coherent naturalistic vision (Rawdata)

description: During naturalistic vision, the brain generates coherent percepts by integrating sensory inputs scattered across the visual field. Here, we asked whether this integration process is mediated by rhythmic cortical feedback. In EEG and fMRI experiments, we experimentally manipulated integrative processing by changing the spatiotemporal coherence of naturalistic videos presented across visual hemifields. Our EEG data revealed that information about incoherent videos is coded in feedforward-related gamma activity while information about coherent videos is coded in feedback-related alpha activity, indicating that integration is indeed mediated by rhythmic activity. Our fMRI data identified scene-selective cortex and hMT as likely sources of this feedback. Analytically combining our EEG and fMRI data further revealed that feedback-related representations in the alpha band shape the earliest stages of visual processing in cortex. Together, our findings indicate that the construction of coherent visual experiences relies on cortical feedback rhythms that fully traverse the visual hierarchy.
DOI: 10.5281/zenodo.8369130
title: Alpha-frequency feedback to early visual cortex orchestrates coherent naturalistic vision (Rawdata)

description: During naturalistic vision, the brain generates coherent percepts by integrating sensory inputs scattered across the visual field. Here, we asked whether this integration process is mediated by rhythmic cortical feedback. In EEG and fMRI experiments, we experimentally manipulated integrative processing by changing the spatiotemporal coherence of naturalistic videos presented across visual hemifields. Our EEG data revealed that information about incoherent videos is coded in feedforward-related gamma activity while information about coherent videos is coded in feedback-related alpha activity, indicating that integration is indeed mediated by rhythmic activity. Our fMRI data identified scene-selective cortex and hMT as likely sources of this feedback. Analytically combining our EEG and fMRI data further revealed that feedback-related representations in the alpha band shape the earliest stages of visual processing in cortex. Together, our findings indicate that the construction of coherent visual experiences relies on cortical feedback rhythms that fully traverse the visual hierarchy.
DOI: 10.5281/zenodo.8216110
title: Patin_PhD_Microfading-VanGogh_data-figures

description: It contains the data and figures related to my PhD dissertation, which focused on the development of a new microfading system to study light-induced colour change on Van Gogh's works.
DOI: 10.5281/zenodo.8216109
title: Patin_PhD_Microfading-VanGogh_data-figures

description: It contains the data and figures related to my PhD dissertation, which focused on the development of a new microfading system to study light-induced colour change on Van Gogh's works.
DOI: 10.34740/kaggle/dsv/6517819
title: 📒 Meta Kaggle ported to MS SQL SERVER 2022 DB
DOI: 10.6084/m9.figshare.24182160
title: address match and correction

description: The original data of place names and addresses and the text data obtained from Weibo
DOI: 10.6084/m9.figshare.24182160.v2
title: address match and correction

description: The original data of place names and addresses and the text data obtained from Weibo
DOI: 10.6084/m9.figshare.24182160.v1
title: address match and correction

description: The original data of place names and addresses and the text data obtained from Weibo
DOI: 10.5281/zenodo.8369136
title: Alpha-frequency feedback to early visual cortex orchestrates coherent naturalistic vision

description: During naturalistic vision, the brain generates coherent percepts by integrating sensory inputs scattered across the visual field. Here, we asked whether this integration process is mediated by rhythmic cortical feedback. In EEG and fMRI experiments, we experimentally manipulated integrative processing by changing the spatiotemporal coherence of naturalistic videos presented across visual hemifields. Our EEG data revealed that information about incoherent videos is coded in feedforward-related gamma activity while information about coherent videos is coded in feedback-related alpha activity, indicating that integration is indeed mediated by rhythmic activity. Our fMRI data identified scene-selective cortex and hMT as likely sources of this feedback. Analytically combining our EEG and fMRI data further revealed that feedback-related representations in the alpha band shape the earliest stages of visual processing in cortex. Together, our findings indicate that the construction of coherent visual experiences relies on cortical feedback rhythms that fully traverse the visual hierarchy.
DOI: 10.5281/zenodo.8369135
title: Alpha-frequency feedback to early visual cortex orchestrates coherent naturalistic vision

description: During naturalistic vision, the brain generates coherent percepts by integrating sensory inputs scattered across the visual field. Here, we asked whether this integration process is mediated by rhythmic cortical feedback. In EEG and fMRI experiments, we experimentally manipulated integrative processing by changing the spatiotemporal coherence of naturalistic videos presented across visual hemifields. Our EEG data revealed that information about incoherent videos is coded in feedforward-related gamma activity while information about coherent videos is coded in feedback-related alpha activity, indicating that integration is indeed mediated by rhythmic activity. Our fMRI data identified scene-selective cortex and hMT as likely sources of this feedback. Analytically combining our EEG and fMRI data further revealed that feedback-related representations in the alpha band shape the earliest stages of visual processing in cortex. Together, our findings indicate that the construction of coherent visual experiences relies on cortical feedback rhythms that fully traverse the visual hierarchy.
DOI: 10.5281/zenodo.8367102
title: Data related to the manuscript "Reduced amplification by phi29 DNA polymerase in the presence of unbound oligos during rolling circle amplification"

description: Raw data from AC susceptometry and processed data in excel sheets.
DOI: 10.5281/zenodo.8367101
title: Data related to the manuscript "Reduced amplification by phi29 DNA polymerase in the presence of unbound oligos during rolling circle amplification"

description: Raw data from AC susceptometry and processed data in excel sheets.
DOI: 10.6084/m9.figshare.24182352
title: Supplementary File 1

description: Supplementary File 1
DOI: 10.6084/m9.figshare.24182352.v1
title: Supplementary File 1

description: Supplementary File 1
DOI: 10.6084/m9.figshare.24182319
title: reference TSS

description: Reference TSS from Ensembl 107 <i>Sus scrofa</i> reference.
DOI: 10.5281/zenodo.8369354
title: Enhanced design of multiplexed coded masks for Fresnel incoherent correlation holography

description: Original Dataset of figures of the published article Enhanced design of multiplexed coded masks for Fresnel incoherent correlation holography in <em>Scientific Reports</em> <strong>volume 13</strong>, Article number: 7390 (2023). https://doi.org/10.1038/s41598-023-34492-2
DOI: 10.5281/zenodo.8369353
title: Enhanced design of multiplexed coded masks for Fresnel incoherent correlation holography

description: Original Dataset of figures of the published article Enhanced design of multiplexed coded masks for Fresnel incoherent correlation holography in <em>Scientific Reports</em> <strong>volume 13</strong>, Article number: 7390 (2023). https://doi.org/10.1038/s41598-023-34492-2
DOI: 10.6084/m9.figshare.24182322
title: Data from: Carrion ecology in inland aquatic ecosystems: a systematic review

description: Dataset from the article Data from: Carrion ecology in inland aquatic ecosystems: a systematic review
DOI: 10.6084/m9.figshare.24182322.v2
title: Data from: Carrion ecology in inland aquatic ecosystems: a systematic review

description: Dataset from the article Data from: Carrion ecology in inland aquatic ecosystems: a systematic review
DOI: 10.6084/m9.figshare.24182322.v1
title: Data from: Carrion ecology in inland aquatic ecosystems: a systematic review

description: Dataset from the article Data from: Carrion ecology in inland aquatic ecosystems: a systematic review
DOI: 10.6084/m9.figshare.24182268
title: Quantification of gene and miRNA expression and novel miRNA sequences

description: Quantification of gene and miRNA expression and predicted novel miRNA sequences.
DOI: 10.6084/m9.figshare.24182268.v1
title: Quantification of gene and miRNA expression and novel miRNA sequences

description: Quantification of gene and miRNA expression and predicted novel miRNA sequences.
DOI: 10.6084/m9.figshare.24182250
title: Novel coding isoforms annotation

description: Novel coding isoforms annotation of BMI and DSE across five organs.
DOI: 10.6084/m9.figshare.24182250.v1
title: Novel coding isoforms annotation

description: Novel coding isoforms annotation of BMI and DSE across five organs.
DOI: 10.6084/m9.figshare.24182223
title: Full-length transcriptome sequences

description: Full-length transcriptome sequences of BMI and DSE across five organs.
DOI: 10.6084/m9.figshare.24182223.v1
title: Full-length transcriptome sequences

description: Full-length transcriptome sequences of BMI and DSE across five organs.
DOI: 10.5281/zenodo.8366614
title: Awareness, treatment, and control among adults living with arterial hypertension or diabetes mellitus in two rural districts in Lesotho

description: These are pseudo-anonymised data from the ComBaCaL survey and belong to the manuscript "Awareness, treatment, and control among adults living with arterial hypertension or diabetes mellitus in two rural districts in Lesotho". The data dictionary explains the critical data available in the dataset. Between November 2021 and August 2022 , 6061 participants over 18 years old were visited in their households in two districts of Lesotho. Of these, data from those who were diagnosed with either hypertension or diabetes were further analysed and are documented here.
DOI: 10.5281/zenodo.8366615
title: Awareness, treatment, and control among adults living with arterial hypertension or diabetes mellitus in two rural districts in Lesotho

description: These are pseudo-anonymised data from the ComBaCaL survey and belong to the manuscript "Awareness, treatment, and control among adults living with arterial hypertension or diabetes mellitus in two rural districts in Lesotho". The data dictionary explains the critical data available in the dataset. Between November 2021 and August 2022 , 6061 participants over 18 years old were visited in their households in two districts of Lesotho. Of these, data from those who were diagnosed with either hypertension or diabetes were further analysed and are documented here.
DOI: 10.6084/m9.figshare.22581151
title: Full-length transcriptome assembly annotation

description: The production of semen in boars involves multiple reproductive glands, including the testis (Tes), epididymis (Epi), vesicular gland (VG), prostate gland (PG), and bulbourethral gland (BG). However, previous studies on boar reproduction primarily focused on the testis, with little attention paid to the other glands. Here, we integrated single-molecule long-read sequencing with short-read sequencing to characterize the RNA landscape from five glands of Banna mini-pig inbred line (BMI) and Diannan small-ear pigs (DSE). We identified 110,996 full-length isoforms from 22,298 genes, and further classified the alternative splicing (AS) events in these five glands. Transcriptome-wide variation analysis indicated that the number of single nucleotide polymorphisms (SNPs) in five tissues of BMI was significantly lower than that in the non-inbred pig, DSE, revealing the effect of inbreeding on BMI. Additionally, we performed small-RNA sequencing and identified 299 novel miRNAs across all glands. Overall, our findings provide a comprehensive overview of the RNA landscape within these five glands, paving the path for future investigations on reproductive biology and the impact of inbreeding on pig transcriptome.
DOI: 10.6084/m9.figshare.22581151.v4
title: <strong>Long- and short-read RNA sequencing from five reproductive organs of boar</strong>

description: The production of semen in boars involves multiple reproductive glands, including the testis (Tes), epididymis (Epi), vesicular gland (VG), prostate gland (PG), and bulbourethral gland (BG). However, previous studies on boar reproduction primarily focused on the testis, with little attention paid to the other glands. Here, we integrated single-molecule long-read sequencing with short-read sequencing to characterize the RNA landscape from five glands of Banna mini-pig inbred line (BMI) and Diannan small-ear pigs (DSE). We identified 110,996 full-length isoforms from 22,298 genes, and further classified the alternative splicing (AS) events in these five glands. Transcriptome-wide variation analysis indicated that the number of single nucleotide polymorphisms (SNPs) in five tissues of BMI was significantly lower than that in the non-inbred pig, DSE, revealing the effect of inbreeding on BMI. Additionally, we performed small-RNA sequencing and identified 299 novel miRNAs across all glands. Overall, our findings provide a comprehensive overview of the RNA landscape within these five glands, paving the path for future investigations on reproductive biology and the impact of inbreeding on pig transcriptome.
DOI: 10.5281/zenodo.8116920
title: Hierarchical assemblies ssRNA

description: Models of single-stranded RNA with atomic detail generated with the hierarchical chain growth; RNA fragment MD library the polymers were grown from.
description: The data uploaded here may be updated. *HCG_models.tar.gz*: homopolymeric rA30 and rU30, rA19 with attached FRET fluorophores Alexa 594 and Alexa 488, heteropolymeric rUCAAUC, and 5' UTR of SARS-CoV-2. For each model we uploaded a multiframe PDB with 20 models. *fragmentLib_RNA.tar.gz*: 100 ns REMD trajectories of 64 fragments used as input for HCG (or alternative fragment assembly implementations).
DOI: 10.5281/zenodo.8116921
title: Hierarchical assemblies ssRNA

description: Models of single-stranded RNA with atomic detail generated with the hierarchical chain growth; RNA fragment MD library the polymers were grown from.
description: The data uploaded here may be updated. HCG_models.tar.gz: homopolymeric rA30 and rU30, heteropolymeric rUCAAUC. For each model we uploaded a multiframe PDB with 20 models. fragmentLib_RNA.tar.gz: 100 ns REMD trajectories of 64 fragments used as input for HCG (or alternative fragment assembly implementations).
DOI: 10.5281/zenodo.8369304
title: Hierarchical assemblies ssRNA

description: Models of single-stranded RNA with atomic detail generated with the hierarchical chain growth; RNA fragment MD library the polymers were grown from.
description: The data uploaded here may be updated. HCG_models.tar.gz: homopolymeric rA30 and rU30, heteropolymeric rUCAAUC, rA19 with attached FRET fluorophores Alexa 594 and Alexa 488, and 5' UTR of SARS-CoV-2. For each model we uploaded a multiframe PDB with 20 models. fragmentLib_RNA.tar.gz: 100 ns REMD trajectories of 64 fragments used as input for HCG (or alternative fragment assembly implementations).
DOI: 10.5281/zenodo.8369324
title: Hierarchical assemblies ssRNA

description: Models of single-stranded RNA with atomic detail generated with the hierarchical chain growth; RNA fragment MD library the polymers were grown from.
description: The data uploaded here may be updated. *HCG_models.tar.gz*: homopolymeric rA30 and rU30, rA19 with attached FRET fluorophores Alexa 594 and Alexa 488, heteropolymeric rUCAAUC, and 5' UTR of SARS-CoV-2. For each model we uploaded a multiframe PDB with 20 models. *fragmentLib_RNA.tar.gz*: 100 ns REMD trajectories of 64 fragments used as input for HCG (or alternative fragment assembly implementations).
DOI: 10.15151/esrf-es-1301645599
title: Italian CryoEM Bag (ICB)

description: This BAG application builds on the development of single particle cryo-EM in the Italian Structural Biology community, as in Italy there is no top-end instrument available. The groups in this application have acquired know-how in cryo.EM through international collaborations or by acquiring medium-level in-house equipment. Access to the CM01 beamline at the ESRF has been instrumental for the achievement of high-profile scientific results and publications in top journals. Presently three screening microscopes are available in Italy, these instruments will boost sample production and the number of applications to CM01. Given these premises a BAG from Italian institutions could ensure timely data collection, nurturing the expansion of the field in Italy and a high-level scientific production.
DOI: 10.5281/zenodo.4769954
title: Figure data for study "Bioenergy-induced land-use change emissions with sectorally fragmented policies"

description: This data set contains the figure data that was use to create the figures shown in the study "Bioenergy-induced land-use change emissions with sectorally fragmented policies".
DOI: 10.5281/zenodo.6418076
title: Model run and scenario data for study "Bioenergy-induced land-use change emissions with sectorally fragmented policies"

description: This data archive contains model runs and data analysis files to the research article <strong>Bioenergy-induced land-use change emissions with sectorally fragmented policies</strong> by <em>Leon Merfort, Nico Bauer, Florian Humpenöder, David Klein, Jessica Strefler, Alexander Popp, Gunnar Luderer, Elmar Kriegler</em> submitted to <em>Nature Climate Change </em>(2022). <em><strong>ModelRuns </strong></em>(directory) contains all model runs of the scenarios underlying the paper. <em><strong>DataAnalysis </strong></em>(directory) contains an RStudio Project that was used for the data analysis and the generation of the figures of the paper. It additionally contains all figures and figure data that are shown in the paper. <em><strong>ScenarioMapping.pdf</strong></em> contains the mapping from scenario names used in the paper to the model experiment names (in the directory ModelRuns).