cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4724671
title: CIFAR10-DVS

description: This folder contains the neuromorphic vision dataset named as 'CIFAR10-DVS' obtained by displaying the moving images of the CIFAR-10 dataset (http://www.cs.toronto.edu/~kriz/cifar.html) on a LCD monitor. The dataset is used for event-driven scene classification and pattern recognition. These recordings can be displayed using the jAER software (http://sourceforge.net/p/jaer/wiki/Home) using filters DVS128.<br>The files "dat2mat.m" and "mat2dat.m" in (http://www2.imse-cnm.csic.es/caviar/MNIST_DVS/) can be used to transfer lists of events between jAER format (.dat or .aedat) and matlab.<br><b><i>Please cite it if you intend to use this dataset.</i></b><b><i> Li H, Liu H, Ji X, Li G and Shi L (2017) CIFAR10-DVS: An Event-Stream Dataset for Object Classification. Front. Neurosci. 11:309. doi: 10.3389/fnins.2017.00309</i></b><br><br><br>The high-sensitivity DVS used in the recording reported in:P. Lichtsteiner, C. Posch, and T. Delbruck, “A 128×128 120 dB 15 μs latency asynchronous temporal contrast vision sensor,” IEEE J. Solid-State Circuits, vol. 43, no. 2, pp. 566–576, Feb. 2008<br>A single 128x128 pixel DVS sensor was placed in front of a 24" LCD monitor. Images of CIFAR-10 were upscaled to 512 * 512 through bicubic interpolation, and displayed on the LCD monitor with circulating smooth movement. A total of 10,000 event-stream recordings in 10 classes(airplane, automobile, bird, cat, deer, dog, frog, horse, ship, truck) with 1000 recordings per classes were obtained.
DOI: 10.6084/m9.figshare.4724698
title: The first insight into the tissue specific taxus transcriptome via Illumina second generation sequencing

description: We performed the de novo assembly of Taxus mairei transcriptome using Illumina paired-end sequencing technology. In a single run, we produced 13,737,528 sequencing reads corresponding to 2.03 Gb total nucleotides. These reads were assembled into 36,493 unique sequences
DOI: 10.6084/m9.figshare.4724698.v1
title: The first insight into the tissue specific taxus transcriptome via Illumina second generation sequencing

description: We performed the de novo assembly of Taxus mairei transcriptome using Illumina paired-end sequencing technology. In a single run, we produced 13,737,528 sequencing reads corresponding to 2.03 Gb total nucleotides. These reads were assembled into 36,493 unique sequences
DOI: 10.6084/m9.figshare.4724665
title: Yin-yang to rainbow

description: An animated gif showing the transition of a yin-yang symbol to a rainbow coloured symbol. It can be used to symbolize a trasition between duality and diversity.<br><br>R code and construction instructions included<br>
DOI: 10.6084/m9.figshare.4724665.v1
title: Yin-yang to rainbow

description: An animated gif showing the transition of a yin-yang symbol to a rainbow coloured symbol. It can be used to symbolize a trasition between duality and diversity.<br><br>R code and construction instructions included<br>
DOI: 10.6084/m9.figshare.4724314
title: G2F inbred and hybrid greenhouse phenotype generated from NIC

description: This is the information of G2F inbred and hybrid pilot data set lines captured in NIC greenhouse. (Note: One inbred line PHG35 is not germinated; PHB47/PHZ51 in hybrid pilot is duplicated once)<br>
DOI: 10.6084/m9.figshare.4721407
title: Continuous Average Straightness Data

description: Real-world data used to test our implementation of the average continuous Straightness, and associated results.<br>The source code is available on GitHub: https://github.com/CompNet/SpatialMeasures
DOI: 10.6084/m9.figshare.4721425
title: Data for research article "On the evolutionary origins of equity", Debove et al., Plos One (2017)

description: Data, models, source code and analysis files used to obtain the results reported in Debove, S., et al., On the evolutionary origins of equity, Plos One (2017)
DOI: 10.6084/m9.figshare.4721374
title: Road networks - Graphs as Graphml files

description: Real-world road networks used to test the implementation of the average continuous Straightness provided in https://github.com/CompNet/SpatialMeasures
DOI: 10.6084/m9.figshare.4721401
title: Road networks - Plots and results

description: Plots and results obtained for the real-world networks used to test the implementation of the average continuous Straightness provided in https://github.com/CompNet/SpatialMeasures
DOI: 10.6084/m9.figshare.4721401.v1
title: Road networks - Plots and results

description: Plots and results obtained for the real-world networks used to test the implementation of the average continuous Straightness provided in https://github.com/CompNet/SpatialMeasures
DOI: 10.6084/m9.figshare.4721425.v1
title: Data for research article "On the evolutionary origins of equity", Debove et al., Plos One (2017)

description: Data, models, source code and analysis files used to obtain the results reported in Debove, S., et al., On the evolutionary origins of equity, Plos One (2017)
DOI: 10.6084/m9.figshare.4721374.v1
title: Road networks

description: Real-world road networks used to test the implementation of the average continuous Straightness provided in https://github.com/CompNet/SpatialMeasures
DOI: 10.6084/m9.figshare.4721287
title: Virus text mining dictionaries

description: These are the dictionary files to be used with the SPECIES text mining tagger (bitbucket.org/larsjuhljensen/tagger) to annotate virus species and virus proteins in text.
DOI: 10.6084/m9.figshare.4721407.v3
title: Continuous Average Straightness Data

description: Real-world data used to test our implementation of the average continuous Straightness, and associated results.<br>The source code is available on GitHub: https://github.com/CompNet/SpatialMeasures
DOI: 10.6084/m9.figshare.4721287.v1
title: virus_entities.tsv

description: These are the dictionary files to be used with the SPECIES text mining tagger (bitbucket.org/larsjuhljensen/tagger) to annotate virus species and virus proteins in text.
DOI: 10.6084/m9.figshare.4721407.v2
title: Continuous Average Straightness Data

description: Real-world data used to test our implementation of the average continuous Straightness, and associated results.<br>The source code is available on GitHub: https://github.com/CompNet/SpatialMeasures
DOI: 10.6084/m9.figshare.4721224
title: All SPSS Tables and Outputs from Assessments of Ebola knowledge, attitudes and practices in Forécariah, Guinea and Kambia, Sierra Leone, July–August 2015

description: The border region of Forécariah (Guinea) and Kambia (Sierra Leone) was of immense interest to the West Africa Ebola response. Cross-sectional household surveys with multi-stage cluster sampling procedure were used to collect random samples from Kambia (<i>n</i> = 635) in July 2015 and Forécariah (<i>n</i> = 502) in August 2015 to assess public knowledge, attitudes and practices related to Ebola. Knowledge of the disease was high in both places, and handwashing with soap and water was the most widespread prevention practice. Acceptance of safe alternatives to traditional burials was significantly lower in Forécariah compared with Kambia. In both locations, there was a minority who held discriminatory attitudes towards survivors. Radio was the predominant source of information in both locations, but those from Kambia were more likely to have received Ebola information from community sources (mosques/churches, community meetings or health workers) compared with those in Forécariah. These findings contextualize the utility of Ebola health messaging during the epidemic and suggest the importance of continued partnership with community leaders, including religious leaders, as a prominent part of future public health protection.This article is part of the themed issue ‘The 2013–2016 West African Ebola epidemic: data, decision-making and disease control’.
DOI: 10.6084/m9.figshare.4721230
title: Data from Allometric growth in reef-building corals

description: Predicting demographic rates is a critical part of forecasting the future of ecosystems under global change. Here, we test if growth rates can be predicted from morphological traits for a highly diverse group of colonial symbiotic organisms: scleractinian corals. We ask whether growth is isometric or allometric among corals, and whether most variation in coral growth rates occurs at the level of the species or morphological group. We estimate growth as change in planar area for 11 species, across five morphological groups and over 5 years. We show that coral growth rates are best predicted from colony size and morphology rather than species. Coral size follows a power scaling law with a constant exponent of 0.91. Despite being colonial organisms, corals have consistent allometric scaling in growth. This consistency simplifies the task of projecting community responses to disturbance and climate change.
DOI: 10.6084/m9.figshare.4721224.v1
title: All SPSS Tables and Outputs from Assessments of Ebola knowledge, attitudes and practices in Forécariah, Guinea and Kambia, Sierra Leone, July–August 2015

description: The border region of Forécariah (Guinea) and Kambia (Sierra Leone) was of immense interest to the West Africa Ebola response. Cross-sectional household surveys with multi-stage cluster sampling procedure were used to collect random samples from Kambia (<i>n</i> = 635) in July 2015 and Forécariah (<i>n</i> = 502) in August 2015 to assess public knowledge, attitudes and practices related to Ebola. Knowledge of the disease was high in both places, and handwashing with soap and water was the most widespread prevention practice. Acceptance of safe alternatives to traditional burials was significantly lower in Forécariah compared with Kambia. In both locations, there was a minority who held discriminatory attitudes towards survivors. Radio was the predominant source of information in both locations, but those from Kambia were more likely to have received Ebola information from community sources (mosques/churches, community meetings or health workers) compared with those in Forécariah. These findings contextualize the utility of Ebola health messaging during the epidemic and suggest the importance of continued partnership with community leaders, including religious leaders, as a prominent part of future public health protection.This article is part of the themed issue ‘The 2013–2016 West African Ebola epidemic: data, decision-making and disease control’.
DOI: 10.6084/m9.figshare.4721230.v1
title: Data from Allometric growth in reef-building corals

description: Predicting demographic rates is a critical part of forecasting the future of ecosystems under global change. Here, we test if growth rates can be predicted from morphological traits for a highly diverse group of colonial symbiotic organisms: scleractinian corals. We ask whether growth is isometric or allometric among corals, and whether most variation in coral growth rates occurs at the level of the species or morphological group. We estimate growth as change in planar area for 11 species, across five morphological groups and over 5 years. We show that coral growth rates are best predicted from colony size and morphology rather than species. Coral size follows a power scaling law with a constant exponent of 0.91. Despite being colonial organisms, corals have consistent allometric scaling in growth. This consistency simplifies the task of projecting community responses to disturbance and climate change.
DOI: 10.6084/m9.figshare.4721116
title: Isocyanide synthase domains, newick trees and alignments

description: Maximum likelihood phylogenies and associated alignments of isocyanide synthase domains proteins across the tree of life
DOI: 10.6084/m9.figshare.4721104
title: File for generating beta lactamase database

description: The file contains two rows, one for beta lactamase name and one for accession number, for compilation of database
DOI: 10.6084/m9.figshare.4721074
title: PowerPoint Slides for: Childhood Estimates of Glomerular Filtration Rate Based on Creatinine and Cystatin C: Importance of Body Composition

description: <i>Background:</i> Creatinine and cystatin C concentrations are commonly used to estimate glomerular filtration rate (eGFR) in clinical practice and epidemiological studies. To estimate the influence of different body composition measures on eGFR from creatinine and cystatin C blood concentrations, we compared the associations of different anthropometric and body composition measures with eGFR derived from creatinine (eGFRcreat) and cystatin C (eGFRcystC) blood concentrations. <i>Methods:</i> In a population-based cohort study among 4,305 children aged 6.0 years (95% range 5.7-8.0), we measured weight and height and calculated body mass index (BMI) and body surface area (BSA), and lean and fat mass using dual-energy X-ray absorptiometry. At the same age, we measured creatinine and cystatin C blood concentrations and estimated the GFR. <i>Results:</i> Correlation between eGFR based on creatinine and cystatin C concentrations was <i>r</i> = 0.40 (<i>p</i> value &lt;0.01). Higher BMI was associated with lower eGFRcystC but not with eGFRcreat. Higher BSA was associated with higher eGFRcreat and lower eGFRcystC (<i>p</i> value &lt;0.05). Lean and fat mass percentages were associated with eGFRcreat but not with eGFRcystC. <i>Conclusion:</i> Our findings suggest that both eGFRcreat and eGFRcystC are influenced by BMI and BSA. eGFRcreat is more strongly influenced by body composition than eGFRcystC.
DOI: 10.6084/m9.figshare.4721083
title: Typing of beta lactmases in 1638 P. aeruginosa genomes - output

description: Output from typing beta lactamase gene presence in P. aeruginosa. Two typing files: one for the large database and one for ampC divergence
DOI: 10.6084/m9.figshare.4721104.v1
title: File for generating beta lactamase database

description: The file contains two rows, one for beta lactamase name and one for accession number, for compilation of database
DOI: 10.6084/m9.figshare.4721065
title: Supplementary Material for: Realistic 3D-Printed Tracheobronchial Tree Model from a 1-Year-Old Girl for Pediatric Bronchoscopy Training

description: No Abstract<br>
DOI: 10.6084/m9.figshare.4721080
title: Genomic Islands typing in 1638 P. aeruginosa isolates - output

description: The output from a blast-based typing of the presence of genomic islands in 1638 P. aeruginosa isolates
DOI: 10.6084/m9.figshare.4721083.v1
title: Typing of beta lactmases in 1638 P. aeruginosa genomes - output

description: Output from typing beta lactamase gene presence in P. aeruginosa. Two typing files: one for the large database and one for ampC divergence
DOI: 10.6084/m9.figshare.4721080.v1
title: Genomic Islands typing in 1638 P. aeruginosa isolates - output

description: The output from a blast-based typing of the presence of genomic islands in 1638 P. aeruginosa isolates
DOI: 10.6084/m9.figshare.4721074.v1
title: PowerPoint Slides for: Childhood Estimates of Glomerular Filtration Rate Based on Creatinine and Cystatin C: Importance of Body Composition

description: <i>Background:</i> Creatinine and cystatin C concentrations are commonly used to estimate glomerular filtration rate (eGFR) in clinical practice and epidemiological studies. To estimate the influence of different body composition measures on eGFR from creatinine and cystatin C blood concentrations, we compared the associations of different anthropometric and body composition measures with eGFR derived from creatinine (eGFRcreat) and cystatin C (eGFRcystC) blood concentrations. <i>Methods:</i> In a population-based cohort study among 4,305 children aged 6.0 years (95% range 5.7-8.0), we measured weight and height and calculated body mass index (BMI) and body surface area (BSA), and lean and fat mass using dual-energy X-ray absorptiometry. At the same age, we measured creatinine and cystatin C blood concentrations and estimated the GFR. <i>Results:</i> Correlation between eGFR based on creatinine and cystatin C concentrations was <i>r</i> = 0.40 (<i>p</i> value &lt;0.01). Higher BMI was associated with lower eGFRcystC but not with eGFRcreat. Higher BSA was associated with higher eGFRcreat and lower eGFRcystC (<i>p</i> value &lt;0.05). Lean and fat mass percentages were associated with eGFRcreat but not with eGFRcystC. <i>Conclusion:</i> Our findings suggest that both eGFRcreat and eGFRcystC are influenced by BMI and BSA. eGFRcreat is more strongly influenced by body composition than eGFRcystC.
DOI: 10.6084/m9.figshare.4720993
title: Supplementary Material for: Findings of Vascular Brain Injury and Structural Loss from Cranial Magnetic Resonance Imaging in Elderly American Indians: The Strong Heart Study

description: <b><i>Background:</i></b> The Cerebrovascular Disease and its Consequences in American Indians study conducted cranial MRI examination of surviving participants of the Strong Heart Study, a longitudinal cohort of elderly American Indians. <b><i>Methods:</i></b> Of the 1,033 recruited participants, some were unable to complete the MRI (<i>n</i> = 22), some scans were unusable due to participant motion or technical errors (<i>n</i> = 13), and one community withdrew consent after data collection (<i>n</i> = 209), leaving 789 interpretable MRI scan images. Six image sequences were obtained in contiguous slices on 1.5T scanners. Neuroradiologists graded white matter hyperintensities (WMH), sulci, and ventricles on a 0- to 9-point scale, and recorded the presence of infarcts and hemorrhages. Intracranial, brain, hippocampal, and WMH volumes were estimated by automated image processing. <b><i>Results:</i></b> The median scores for graded measures were 2 (WMH) and 3 (sulci, ventricles). About one-third of participants had lacunar (20%) or other infarcts (13%); few had hemorrhages (5.7%). Findings of cortical atrophy were also prevalent. Statistical analyses indicated significant associations between older age and findings of vascular injury and atrophy; male gender was associated with findings of cortical atrophy. <b><i>Conclusions:</i></b> Vascular brain injury is the likely explanation in this elderly American Indian population for brain infarcts, hemorrhages, WMH grade, and WMH volume. Although vascular brain injury may play a role in other findings, independent degenerative other disease processes may underlie abnormal sulcal widening, ventricular enlargement, hippocampal volume, and total brain volume. Further examination of risk factors and outcomes with these findings may expand the understanding of neurological conditions in this understudied population.
DOI: 10.6084/m9.figshare.4720984
title: Supplementary Material for: Short Stature in a Boy with Multiple Early-Onset Autoimmune Conditions due to a STAT3 Activating Mutation: Could Intracellular Growth Hormone Signalling Be Compromised?

description: <i>Background:</i> Germline <i>STAT3</i> gain-of-function (GOF) mutations cause multiple endocrine and haematologic autoimmune disorders, lymphoproliferation, and growth impairment. As the JAK-STAT pathway is known to transduce the growth hormone (GH) signalling, and STAT3 interacts with STAT5 in growth regulation, we hypothesised that short stature in <i>STAT3</i> GOF mutations results mostly from GH insensitivity via involving activation of STAT5. <i>Case Report:</i> A boy with a novel <i>STAT3</i> c.2144C&gt;T (p.Pro715Leu) mutation presented with short stature (–2.60 SD at 5.5 years). He developed diabetes mellitus at 11 months, generalised lympho­proliferation, autoimmune thyroid disease, and immune bicytopenia in the subsequent years. At 5.5 years, his insulin-like growth factor-1 (IGF-I) was 37 µg/L (–2.22 SD) but stimulated GH was 27.7 µg/L. Both a standard IGF-I generation test (GH 0.033 mg/kg/day sc; 4 days) and a high-dose prolonged IGF-I generation test (GH 0.067 mg/kg/day sc; 14 days) failed to significantly increase IGF-I levels (37–46 and 72–87 µg/L, respectively). The boy underwent haematopoietic stem cell transplantation at 6 years due to severe neutropenia and massive lymphoproliferation, but unfortunately deceased 42 days after transplantation from reactivated generalised adenoviral infection. <i>Conclusions:</i> Our findings confirm the effect of <i>STAT3</i> GOF mutation on the downstream activation of STAT5 resulting in partial GH insensitivity.
DOI: 10.6084/m9.figshare.4720984.v1
title: Supplementary Material for: Short Stature in a Boy with Multiple Early-Onset Autoimmune Conditions due to a STAT3 Activating Mutation: Could Intracellular Growth Hormone Signalling Be Compromised?

description: <i>Background:</i> Germline <i>STAT3</i> gain-of-function (GOF) mutations cause multiple endocrine and haematologic autoimmune disorders, lymphoproliferation, and growth impairment. As the JAK-STAT pathway is known to transduce the growth hormone (GH) signalling, and STAT3 interacts with STAT5 in growth regulation, we hypothesised that short stature in <i>STAT3</i> GOF mutations results mostly from GH insensitivity via involving activation of STAT5. <i>Case Report:</i> A boy with a novel <i>STAT3</i> c.2144C&gt;T (p.Pro715Leu) mutation presented with short stature (–2.60 SD at 5.5 years). He developed diabetes mellitus at 11 months, generalised lympho­proliferation, autoimmune thyroid disease, and immune bicytopenia in the subsequent years. At 5.5 years, his insulin-like growth factor-1 (IGF-I) was 37 µg/L (–2.22 SD) but stimulated GH was 27.7 µg/L. Both a standard IGF-I generation test (GH 0.033 mg/kg/day sc; 4 days) and a high-dose prolonged IGF-I generation test (GH 0.067 mg/kg/day sc; 14 days) failed to significantly increase IGF-I levels (37–46 and 72–87 µg/L, respectively). The boy underwent haematopoietic stem cell transplantation at 6 years due to severe neutropenia and massive lymphoproliferation, but unfortunately deceased 42 days after transplantation from reactivated generalised adenoviral infection. <i>Conclusions:</i> Our findings confirm the effect of <i>STAT3</i> GOF mutation on the downstream activation of STAT5 resulting in partial GH insensitivity.
DOI: 10.5281/zenodo.3937733
title: Replication data for: Conservation Gaps in Traditional Vegetables Native to Europe and Fennoscandia

description: Vegetables are rich in vitamins and other micronutrients and are important crops for healthy diets and diversification of the food system, and many traditional (also termed underutilized or indigenous) species may play a role. The current study analyzed 35 vegetables with a European region of diversity with the effort to map the conservation status in Fennoscandia and beyond. We mapped georeferenced occurrences and current genebank holdings based on global databases and conducted conservation gaps analysis based on representativeness scores in situ and ex situ. Out of the 35 target species, 19 got at a high priority score for further conservation initiatives, while another 14 species got a medium priority score. We identified a pattern where traditional vegetables are poorly represented in genebank holdings. This corresponds well to a lack of attention in the scientific community measured in number of published papers. Considering the grand challenges ahead in terms of climate change, population growth and demand for sustainability, traditional vegetables deserve greater attention. Our contribution is to provide a basis for conservation priorities among the identified vegetables species native to Fennoscandia.