cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/y86w958sfy
title: Data for: Fuzzy inference model based on triaxial signals for pronation and supination assessment in Parkinson´s disease patients

description: Quantification of biomechanical features during the pronation and supination hand movements of patients with Parkisnons disease.
DOI: 10.6084/m9.figshare.28532630.v1
title: <b><i>Acropora intermedia</i></b> genome

description: The genus <i>Acropora</i>, notable for its diversity and widespread distribution, has recently garnered significant attention, serving as a key model for coral conservation and restoration. <i>Acropora intermedia</i> Brook 1891, a common species in the Indo-Pacific Ocean, exhibits enhanced resistance to both thermal and acid stress. To advance future conservation and molecular studies, we reported an improved high-quality genome assembly for <i>A</i><i>.</i><i> </i><i>intermedia</i> obtained through PacBio Hi-Fi long-read sequencing, with a total genome size of 473 Mb. Compared to the previous version, our assembly shows substantial improvements in contiguity, with the Contig N50 increasing from 40.3 Kb to 2.9 Mb, and the total number of scaffolds decreasing from 6,224 to 633. Specifically, our genome exhibits no uncalled bases (N's) per 100 Kbp, a number remarkably lower than the previous version (5,276.11 per 100 Kbp) The percentage of genome assembly completeness evaluation based on Benchmarking Universal Single-Copy Orthologs (BUSCO) has increased from 90.6% to 92.6%. We predict a total of 26,859 protein-coding genes, with a BUSCO completeness of 95.7%, marking a 2.7% increase from the previous assembly. Our assembly provides a valuable resource for in-depth studies of coral adaptation mechanisms under climate change and facilitates comparative analyses and evolutionary studies of <i>Acropora</i> corals.
DOI: 10.6084/m9.figshare.6087032.v2
title: Smart Book Recommender Evaluation Data

description: This compressed zip file contains all the data regarding the evaluation study of the Smart Book Recommender (SBR). SBR is a semantically enhanced recommendation engine, developed in collaboration with Springer Nature (SN), for suggesting Springer books, journals and conference proceedings for conferences. SBR characterises conferences in terms of the topics covered in their proceedings and applying cosine pairwise similarity computation to produce a set of recommendations. <br>We evaluated SBR on Springer conference series in the field of Computer Science with the help of seven publishing editors and seven researchers from The Open University. The evaluation consisted of two parts: 1) A quantitative analysis, which focused on analysing how evaluators rated each SBR recommendations for two conference series of their choosing.2) A qualitative analysis, which focused on analysing the answers of the surveys that the evaluators completed after a hands-on session with SBR. <br>This compressed file contains the following two CSV files: i) Quantitative - Recommendation Ratings, and ii) Qualitative - Survey Responses. Below we describe the datasets.
DOI: 10.17632/3yrg8svy8p
title: R2D2 TB Network Xpert HR diagnostic accuracy de-indentified data 20231215

description: This is the de-indentified data set from the R2D2 TB network for the primary analysis fform the evaluation of the Xpert MTB Host Response (Xpert HR; Cepheid, USA). The data set is to accompany the Lancet Global Health manuscript LANGLH-D-23-01115 S2214-109X(23)00541-7: Evaluation of the Xpert MTB Host Response assay for the triage of patients with presumed pulmonary tuberculosis:
a prospective diagnostic accuracy study in Viet Nam, India, the Philippines, Uganda, and South Africa.
DOI: 10.6084/m9.figshare.14759094.v1
title: Seasonal mode-1 M2 internal tide models

description: Seasonal mode-1 M<sub>2</sub> internal tide models constructed from 25 years of satellite altimeter data 1992-2017.
DOI: 10.6084/m9.figshare.3559875.v1
title: Appendix A. Data sources, selection, processing, and other considerations.

description: Data sources, selection, processing, and other considerations.
DOI: 10.6084/m9.figshare.7057916.v2
title: Supporting data for "a draft genome assembly of the sea slug Elysia chlorotica"

description: Elysia chlorotica, a sacoglossan sea slug found off the East Coast of the United States, is well-known for its ability to sequester chloroplasts from its algal prey and survive by photosynthesis for up to 12 months in the absence of food supply. Here we present a draft genome assembly of E. chlorotica that was generated using a hybrid assembly strategy with Illumina short reads and PacBio long reads. The genome assembly comprised 9,989 scaffolds, with a total length of 557 Mb and a scaffold N50 of 442 kb. BUSCO assessment indicated that 93.3 % of the expected metazoan genes were completely present in the genome assembly. Annotation of the E. chlorotica genome identified 176 Mb (32.6 %) of repetitive sequences and a total of 24,980 protein-coding genes. We anticipate that the annotated draft genome assembly of the E. chlorotica sea slug will promote the investigation of sacoglossan genetics, evolution, and particularly, the genetic signatures accounting for the long-term functioning of algal chloroplasts in an animal.<br><b>Genome assembly and annotation files provided in this dataset:</b>1. <i>Elysia_chlorotica.fa.gz</i>: genome assembly of Elysia chlorotica in fasta format.2. <i>Elysia_chlorotica.gene.gff.gz</i>: protein-coding gene annotation in GFF3 format.3. <i>Elysia_chlorotica.gene.cds.gz</i>: coding sequences of the protein-coding genes in fasta format.4. <i>Elysia_chlorotica.gene.pep.gz</i>: peptide sequences of the protein-coding genes in fasta format.<br>5. <i>Elysia_chlorotica.ProteinMask.gff.gz</i>: homology-based repetitive elements identified by searching against TE protein database with RepeatProteinMask in GFF3 format.<br>6. <i>Elysia_chlorotica.RepeatMasker.gff.gz</i>: homology-based repetitive elements identified by searching against Repbase with RepeatMasker in GFF3 format.<br>7. <i>Elysia_chlorotica.RepeatModeler.gff.gz</i>: denovo-based repetitive elements identified by RepeatModeler followed by RepeatMasker in GFF3 format.<br>8. <i>Elysia_chlorotica.TRF.gff.gz</i>: tandem repeats identified by Tandem Repeats Finder in GFF3 format.<br>
DOI: 10.17632/v7smh33bst
title: Portuguese Public Procurement Data (PPPData)

description: PPPData comprises 5214 records (public procurement contracts with unique properties), each characterised by 37 fields. This data was collected throughout 2022 from the websites: Portal Base, the Portuguese national repository of public procurement procedures; and Diário da Républica Eléctronico, the official national gazette of Portugal. The gathered data was restricted to public project contracts with a closing date between 2015 and 2022. The resulting dataset was stored in an Microsoft Excel file (.xlsx). 
It provides filterable and queryable data to support the development of statistical analysis techniques and AI-based applications for the construction procurement phase.
Researchers, construction analysts, bidders, and clients can benefit from this structured and systematised procurement information.
ML and/or NLP researchers may utilise this data to train and test new models for both supervised and unsupervised learning problems, allowing, for instance, to gain insights into the procurement factors that affect a project’s performance and assess the procurement’s success at its early stages.
DOI: 10.6084/m9.figshare.1372405.v1
title: UAV survey data from Clifton Camp (ST56557330) V2

description: This is the current version of this dataset, replacing http://dx.doi.org/10.6084/m9.figshare.1269223 This data was collected via low-altitude UAV (Unmanned Aerial Vehicle) survey of an area of Clifton Camp (ST565557330), best known for its Iron Age promontory fort. The dataset comprises of metadata records, near-vertical photographs and a derived 3D polygonal mesh.<br>This dataset has been constructed with two kinds of reuse in mind: Firstly, the area surveyed is culturally rich and underexplored; while some of the non-natural features detected by this survey can be identified, others cannot. These features include:<br>Excavations believed to relate to Brunel’s unfinished reservoir of 1845 (see area marked as ‘2’ in 3D_mesh_derived_images/features-of-interest.tif).<br>A rectilinear feature believed to be an animal enclosure (marked as ‘1’ in features-of-interest.tif - the later reservoir pipeline can be seen cutting through, diagonally).<br>Several other, unidentified, non-natural features (for example see area marked as ‘3’ in features-of-interest.tif) are suggested by the results of this survey.<br>This data is intended to inform future investigations of the site.<br>Secondly, the survey methodologies employed and the structuring of the resulting dataset are intended to act as an exemplar, a standard method of organising similar UAV survey datasets to ensure maximum re-usability. This dataset underpins the article: Gray, S 2015 UAV Survey Data from Clifton Camp (ST56557330), Bristol, UK. Journal of Open Archaeology Data 4: e3, DOI: http://dx.doi.org/10.5334/joad.ah
DOI: 10.6084/m9.figshare.16886155.v1
title: A database of crystal-bearing magmas for the calibration of a rheological model

description: The database consists of rheological data for liquid-solid systems, reported as an excel file with 3 different sheets, distinguishing natural, synthetic, and analogue materials. For each case we report: Paper (citation), Material (Analogue), Method (of investigation), Temperature T (°C), Crystal fraction (Ф), Mean Aspect Ratio (R), Strain rate (s^-1), Log melt viscosity (Pa s log units), Log apparent viscosity (Pa s log units), Log relative viscosity.The database include:1-Bibliographic research including over 1400 rheological data taken from over 40 scientific papers (Database_ScientificData.xlsx)2-Instructions to read the database file and associated references (Instructions.txt)3-Spreadsheet for the calculation of the crystal-bearing magma viscosity, according to the proposed model (Parameterization_ScientificData.xlsx).
DOI: 10.6084/m9.figshare.7891103.v1
title: System identification dataset

description: The dataset contains two sub-folders:<br>1. Load sharing 2. function approximation<br>1. Load sharing ("data.zip"):<br>Each folder corresponds with a subject.<br>the monopolar, single differential and double differential data issaved in the corresponding sub-folders 'mono', 'sd' and 'dd' respectively.<br>In each subfolder, the data is saved as '30.mat','50mat',or '70.mat' corresponding with 30%,50% or 70% MVC isometric flexion-extension.<br>The recording protocol can be found the word file 'report.doc' in this folder inThe subsection: experimental recording.<br>Structure of the '.mat' files :<br>They all have the same structure:<br>Raw_Torque : The measured Torque in ADC numbersstructure 'TAB_ARV' , the EMG envelopes for 'BB', 'BR', 'TM', 'TL' (Read report for the methods and acronyms).<br>2. function approximation ("fun_approx.zip")<br><br>Multiple benchmark examples including a piecewise single variable function, five nonlinear dynamic plants with various nonlinear structures, the chaotic Mackey Glass time series (with different signal to noise ratio (SNR) and various chaotic degree) and the real-world Box-Jenkins gas furnace system are considered to verify the effectiveness of the proposed FJWNN model. <br>The description ("info.pdf") and the entire simulated data as well as the results of our method on the training and test sets (in excel files) were provided.
DOI: 10.6084/m9.figshare.14247428.v1
title: Supplementary Material for: Implementing Medical Chatbots: An Application on Hidradenitis Suppurativa

description: <b><i>Background:</i></b> The use of digital health resources is growing quickly as they are easily accessible and permit self-evaluation. Yet, research on consumer health informatics platforms is insufficient. Chatbots, interactive conversational platforms based on artificial intelligence, can facilitate access to specific information. Hidradenitis suppurativa (HS) is burdensome and has a high threshold for consultation. <b><i>Objectives:</i></b> We aimed to identify the most important principles for the assembly of medical chatbots through the analysis of usage data. <b><i>Methods:</i></b> The <i>HS Chatbot</i>1 is a question-and-answer platform in the style of a chatbot. Usage data were collected over the course of a year. 254 responses were statistically analysed. <b><i>Results:</i></b> 239 users were alleged patients. 82.9% were looking for a tentative diagnosis. The users were on average 32.49 (±11.33) years old and predominantly female (70.2%). The average number of clicks per visit on the website was 14.69 (±8.83). <b><i>Conclusions:</i></b> A medical chatbot has to be customised to the specific subject whilst general principles have to be considered. High-quality information has to be available in just a few clicks. People concerned about HS are looking for a diagnosis online and often have not seen a doctor previously. Guidance towards appropriate care should be provided.
DOI: 10.6084/m9.figshare.25195823.v1
title: Supplementary Material for: Anal Canal Melanoma: Challenging the Odds

description: <b><i>Introduction:</i></b> Anal canal melanoma is a rare form of both anal cancer and skin melanoma, representing 1% of all anal cancers. Diagnosis is often made at an advanced disease stage. Because of late diagnosis and aggressive clinical course, anal canal melanoma has a very poor prognosis. <b><i>Case Presentation:</i></b> We present the case of a 61-year-old female with anal canal melanoma and lung, liver, pelvic and central nervous system (CNS) metastasis, BRAF V600E mutated. Combined BRAF/MEK inhibition and CNS radiation therapy were able to achieve excellent local and distant disease control. <b><i>Conclusion:</i></b> Anal canal melanoma is a rare and aggressive form of melanoma. Multidisciplinary management in experienced centers is mandatory for good clinical outcomes.
DOI: 10.6084/m9.figshare.25343170.v2
title: GWAS summary statistics from Casanova <i>et al. </i>(2024) "MRI-derived brain iron, grey matter volume, and risk of dementia and Parkinson’s disease: Observational and genetic analysis in the UK Biobank cohort"

description: If you use these summary statistics please cite:Casanova <i>et al. </i>(2024) "MRI-derived brain iron, grey matter volume, and risk of dementia and Parkinson’s disease: Observational and genetic analysis in the UK Biobank cohort." <i>Neurobiology of Disease</i>. https://doi.org/10.1016/j.nbd.2024.106539See the paper for full details. A summary of the methods is provided below:MethodsWe used imputed genotype information on 16 million genetic variants in 487,442 participants, after excluding variants with &lt;0.1% minor allele frequency or with imputed INFO score &lt;0.3 (see Supplementary Information for details). GWAS were performed in up to 451,000 participants genetically-similar to the 1000 Genomes EUR population (described previously). For GWAS of 17 IDPs (8 brain R2* IDPs and 8 brain QSM IDPs) we used BOLT-LMM (v2.3.2) to estimate associations, adjusted for age at imaging assessment, sex, imaging assessment centre, and genotyping microarray, with genetic relatedness and population structure adjusted for by the BOLT-LMM random-effects model. IDPs were inverse-rank transformed prior to analysis. For GWAS of binary outcomes (AD and non-AD dementia) we used SAIGE-LMM (v0.35.8), adjusted for age at baseline assessment, sex, assessment centre, genotyping microarray, and genetic related and population structure. Analyses were repeated, stratified by sex.FilesEach tarball includes GWAS summary statistics files for the analyses performed in UK Biobank participants of EUR-like genetic ancestry, as described in the above article. All base_pair_locations correspond to human genome b37. Files contain ~16million variants from the v3 genetics+imputation release meeting the inclusion criteria (&gt;=0.1% MAF & imputed INFO score &gt;=0.3).The dementia tarball includes:all-cause dementia (all, males, females),non-Alzheimer's disease dementia (all, males, females).The "MRI iron" tarball includes:T2* estimates in 8 regions,QSM estimates in 8 regions.The "MRI grey matter" tarball includes:Grey matter volumes for 6 regions (all, males, females).<br>
DOI: 10.6084/m9.figshare.27211797.v1
title: 《调亏灌溉对中国玉米产量和水分利用效率影响的Meta分析》所用的数据集

description: 数据集包含研究所使用的44篇文献详细信息、调亏灌溉对玉米产量影响的429个数据对、调亏灌溉对玉米水分利用效率影响的277个数据对。
DOI: 10.6084/m9.figshare.28530299.v1
title: Supplementary Material for: Androgen aggravates chorioamnionitis-induced white matter brain injury and neurobehavioral impairments in males

description: Introduction: Group B Streptococcus (GBS) colonization lead to placental infection and inflammation, known as chorioamnionitis (CA). Fetal exposure to CA is linked to elevated risks of neurobehavioral impairments in offspring, including autism spectrum disorder, which is more prominent in males than females. In our preclinical model of GBS-induced CA, males exhibited heightened placental inflammation compared to females, correlating with more severe subsequent neurobehavioral impairments. We hypothesize that androgens upregulate the placental immune response in male fetuses, potentially contributing to GBS-induced autistic-like traits in male offspring. Our previous findings demonstrated that there were reduced pro-inflammatory cytokines and polymorphonuclear cell infiltration in flutamide (androgen receptor antagonist) plus GBS-infected compared to vehicle plus GBS-infected placenta. In this study we investigated the effect of end gestational androgen blockade on brain injury patterns and neurobehavioral outcomes in offspring in utero exposed to GBS CA. 
Methods: Lewis dams received daily injections of vehicle or flutamide from gestational day (G) 18 to 21, followed by saline or inactivated GBS injections from G19 to 21. Behavioral assessments were conducted from postnatal day (P) 9 to 40 and brains were dissected on P50.
Results: Behavioral assessments revealed impaired social interactions in CA-exposed vs unexposed male rats. These impairments were not observed in flutamide-treated rats. Histological analysis of forebrains at P50 showed lateral forebrain ventricle enlargement and reduced periventricular white matter thickness, namely the corpus callosum and external capsule in offspring exposed to CA contrasting with an improvement in these outcomes observed in flutamide treated rats. Exposure to CA reduced the density of CC-1+ oligodendrocytes in the external capsule whereas flutamide mitigated this reduction in offspring at P50. 
Conclusion: These findings suggest a significant role for androgens in the skewed sex ratio observed in developmental impairments resulting from perinatal inflammation, underscoring the need for personalized sex-specific neuroprotective therapies.
DOI: 10.17632/d4py3vnnzw
title: "Dataset Achievements of Indonesian Elite Pencak Silat Athletes"

description: The performance of elite athletes in competition is influenced by their anthropometry and physical condition, notably in 21st-century world championships.  All trainers in Indonesia are required to incorporate coaching competency skills using a sports science approach to keep up with the rising success of Pencak Silat internationally.  The elite Pencak Silat athletes' physical condition, including their body mass index, body fat percentage, and physical condition, as well as the factors that affect it, such as how challenging it is to become a world champion, can all be evaluated using this dataset.  There isn't much research on athletes' accomplishments among these factors, according to the literature.   Datasets are important when comparing them to data from research that were conducted comparably in other areas.  Data can also be used to construct action plans that integrate psychological and physical aspects into a cohesive whole, as well as modifications or treatments that best complement elite athletes' programs for improving their performance.
This dataset provides information on the gender, BMI, body fat percentage, and physical condition of Indonesia's top Pencak Silat competitors at the XXXII Cambodia 2023 Sea Games. In this study, 20 elite Indonesian Pencak Silat athletes served as samples, with a purposive sampling method utilized to pick a maximum of 12 men and 8 women. From August 2022 until January 21, 2023, tests and measurements of competitors' physical condition are conducted to help elite athletes win the championship. The research data were analyzed using partial correlation statistical analysis and Pearson product-moment correlation coefficient. The selection of martial arts athletes by coaches and administrators can be aided by this dataset. In the future, these datasets can be compared to more precise data from developing nations
DOI: 10.17632/gnb2dsjms2
title: Spatiotemporal transcriptomic map of glial cell response in a mouse model of acute brain ischemia

description: Hello, 

Welcome to the repository for the processed data objects for our manuscript titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischemia" published in PNAS (doi: 10.1073/pnas.2404203121). In this study, we used spatial and single-cell transcriptomics to map out processes governing the response to ischemic stroke during the first week after the injury. Focusing on glial cells, we documented their activation, formation of glial scar and changes in cell-cell communication patterns. Here, we list seurat objects of the spatial and single-cell experiments.

List of files:
- seurat_1stSpatial.rds. A seurat object with Visium ST generated data (gene expression matrix, metadata and image). Clean, suitable for starting-anew analysis.
- seurat_2ndSpatial.rds. A complementary seurat object to the seurat_1stSpatial.rds.
- spatial_seurat_1DP_13_nygen.rds. A complete seurat object of the final Visium spatial dataset (modules scores, deconvolution, ligand-receptor pair values...)
- Seurat_sn_MCAO_Zucha2023_QCFiltered.Rds. Seurat object of pre-processed single-nucleus data.
- Seurat_OLs_integrated_annotated.Rds. Seurat object of processed oligodendrocyte data integrating the single-nucleus and single-cell experiment.

Corresponding author contact: lukas.valihrach@ibt.cas.cz