cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14423687
title: algae as carbon source for CWs

description: enhance denitrification of constructed wetland with algae addition
DOI: 10.6084/m9.figshare.14423687.v2
title: algae as carbon source for CWs

description: enhance denitrification of constructed wetland with algae addition
DOI: 10.6084/m9.figshare.14423687.v1
title: Untitled Item

description: enhance denitrification of constructed wetland with algae addition
DOI: 10.6084/m9.figshare.14423657.v1
title: Search strategy for PsycInfo - Effect of Activity Context Scoping Review Protocol

description: Search strategy for PsycInfo for use for scoping review protocol about parent and child language during different activity contexts.
DOI: 10.5281/zenodo.4670297
title: Data related to article "A recurrent Pathogenic Variant of INPP5K Underlies Autosomal Recessive Congenital Muscular Dystrophy With Cataracts and Intellectual Disability: Evidence for a Founder Effect in Southern Italy"

description: dataset contains clinical data on a patient included in the study referred to Fondazione Besta
DOI: 10.5281/zenodo.4670296
title: Data related to article "A recurrent Pathogenic Variant of INPP5K Underlies Autosomal Recessive Congenital Muscular Dystrophy With Cataracts and Intellectual Disability: Evidence for a Founder Effect in Southern Italy"

description: dataset contains clinical data on a patient included in the study referred to Fondazione Besta
DOI: 10.6084/m9.figshare.14423657
title: Search strategy for PsycInfo: The Effect of Activity Context on the Language used by Parents and Children: A Scoping Review Protocol

description: Search strategy for PsycInfo for use for scoping review protocol about parent and child language during different activity contexts.
DOI: 10.6084/m9.figshare.14423657.v3
title: Search strategy for PsycInfo: The Effect of Activity Context on the Language used by Parents and Children: A Scoping Review Protocol

description: Search strategy for PsycInfo for use for scoping review protocol about parent and child language during different activity contexts.
DOI: 10.6084/m9.figshare.14423657.v2
title: Search strategy for PsycInfo: The Effect of Activity Context on the Language used by Parents and Children: A Scoping Review Protocol

description: Search strategy for PsycInfo for use for scoping review protocol about parent and child language during different activity contexts.
DOI: 10.5281/zenodo.4683487
title: Data related to article "miR-146a in Myasthenia Gravis Thymus Bridges Innate Immunity With Autoimmunity and Is Linked to Therapeutic Effects of Corticosteroids"

description: Raw data obtained by real-time PCR performed to assess the expression of miR-146a-5p and U6 endogenous control in: hyperplastic myasthenia gravis (MG) thymuses; normal thymuses; microdissected germinal centers (GCs) and surrounding thymic medulla from hyperplastic MG thymuses; peripheral blood mononuclear cells (PBMCs) and serum from MG patients and healthy controls; prednisone-treated PBMCs from MG patients and controls. Raw real-time PCR data obtained to assess mRNA levels of the miR-146a target genes, IRAK1, TRAF6, c-REL, ICOS, FAS and IRF8, and the endogenous 18S control, in hyperplastic MG and normal thymuses, microdissected MG GCs plus the surrounding thymic medulla. Confocal microscopy images of normal and hyperplastic MG thymuses after immunostainings performed to show: IRAK1 in combination with CD20 (B cell marker), cytokeratin (epithelial cell marker), CD11c (dendritic cell marker) and CD68 (macrophage marker); cREL in combination with CD20.
description: Study supported by Italian Ministry of Health - grants GR-2013-02358564; Ricerca Corrente_Cavalcante P, Linea 2
DOI: 10.5281/zenodo.4683486
title: Data related to article "miR-146a in Myasthenia Gravis Thymus Bridges Innate Immunity With Autoimmunity and Is Linked to Therapeutic Effects of Corticosteroids"

description: Raw data obtained by real-time PCR performed to assess the expression of miR-146a-5p and U6 endogenous control in: hyperplastic myasthenia gravis (MG) thymuses; normal thymuses; microdissected germinal centers (GCs) and surrounding thymic medulla from hyperplastic MG thymuses; peripheral blood mononuclear cells (PBMCs) and serum from MG patients and healthy controls; prednisone-treated PBMCs from MG patients and controls. Raw real-time PCR data obtained to assess mRNA levels of the miR-146a target genes, IRAK1, TRAF6, c-REL, ICOS, FAS and IRF8, and the endogenous 18S control, in hyperplastic MG and normal thymuses, microdissected MG GCs plus the surrounding thymic medulla. Confocal microscopy images of normal and hyperplastic MG thymuses after immunostainings performed to show: IRAK1 in combination with CD20 (B cell marker), cytokeratin (epithelial cell marker), CD11c (dendritic cell marker) and CD68 (macrophage marker); cREL in combination with CD20.
description: Study supported by Italian Ministry of Health - grants GR-2013-02358564; Ricerca Corrente_Cavalcante P, Linea 2
DOI: 10.5281/zenodo.4689474
title: Data related to article "Simultaneous Detection of NF1, SPRED1, LZTR1, and NF2 Gene Mutations by Targeted NGS in an Italian Cohort of Suspected NF1 Patients"

description: dataset contains Clinical and molecular characteristics of patients affected by neurofibromatosis and studied by next generation sequencing (NGS) panel including NF1, NF2, SPRED1, SMARCB1, and LZTR1 genes on Ion Torren
DOI: 10.5281/zenodo.4689473
title: Data related to article "Simultaneous Detection of NF1, SPRED1, LZTR1, and NF2 Gene Mutations by Targeted NGS in an Italian Cohort of Suspected NF1 Patients"

description: dataset contains Clinical and molecular characteristics of patients affected by neurofibromatosis and studied by next generation sequencing (NGS) panel including NF1, NF2, SPRED1, SMARCB1, and LZTR1 genes on Ion Torren
DOI: 10.15128/r1j098zb13j
title: An efficient and locking-free material point method for three dimensional analysis with simplex elements [dataset]

description: The Material Point Method is a relative newcomer to the world of solid mechanics modelling. Its key advantage is the ability to model problems having large deformations while being relatively close to standard finite element methods, however its use for realistic engineering applications will happen only if the material point can be shown to be both efficient and accurate (compared to standard finite element methods), when modelling complex geometries with a range of material models. In this paper we present developments of the standard material point method aimed at realising these goals. The key contribution provided here is the development of a material point method that avoids volumetric locking (arising from elastic or elasto-plastic material behaviour) whilst using low order tetrahedral finite elements for the background computational mesh, hence allowing unstructured background grids to be used for complex geometries. We also show that these developments can be effectively parallelised to improve computational efficiency.
DOI: 10.5281/zenodo.4694468
title: Gluten Jun-Dec 2020

description: Gluten in food products
DOI: 10.5281/zenodo.17014993
title: Plasma-Driven Hydrocarbon Polymerization (PDHP): Harnessing Non-Equilibrium Kinetics for Selective Aromatization – A Perspective on Advancing Plasma Chemistry

description: This manuscript presents an innovative perspective on Plasma-Driven Hydrocarbon Polymerization (PDHP), a novel technology designed to convert light hydrocarbons (such as methane) into high-value aromatics (Benzene, Toluene, Xylene - BTX) with high efficiency and selectivity under ambient conditions. The approach overcomes the inherent limitations of traditional thermal processes, including high energy consumption, elevated temperatures, and limited selectivity.

The core innovation of PDHP lies in engineering non-equilibrium plasma kinetics to create a bimodal, non-Maxwellian electron energy distribution function (EEDF). This dual distribution enables two distinct electron populations: "hot" electrons (10–60 eV) that selectively dissociate C-H bonds to produce desired radical intermediates, and "cold" electrons (0.5–3 eV) that induce molecular vibrations to promote radical coupling and aromatic ring formation without causing further fragmentation.

To maximize selectivity, this process is synergistically integrated with advanced catalysts, such as zeolites (e.g., ZSM-5) functionalized with metallic nanoparticles (e.g., Au or Ga). This plasma-catalyst synergy directs the reaction pathway towards cyclization, achieving BTX selectivity exceeding 75%, a significant improvement over conventional thermal methods.

The manuscript also addresses key challenges, including plasma instabilities and industrial scalability. It proposes advanced solutions such as the use of modulated magnetic fields and artificial intelligence (AI) algorithms, specifically reinforcement learning, to achieve real-time control and stabilization of the process.

In conclusion, PDHP is positioned as a revolutionary approach in green chemistry. It offers a sustainable, low-energy pathway for producing essential platform chemicals, opening new avenues for decarbonizing the natural gas sector and valorizing waste hydrocarbon streams.
DOI: 10.5281/zenodo.17014992
title: Plasma-Driven Hydrocarbon Polymerization (PDHP): Harnessing Non-Equilibrium Kinetics for Selective Aromatization – A Perspective on Advancing Plasma Chemistry

description: This manuscript presents an innovative perspective on Plasma-Driven Hydrocarbon Polymerization (PDHP), a novel technology designed to convert light hydrocarbons (such as methane) into high-value aromatics (Benzene, Toluene, Xylene - BTX) with high efficiency and selectivity under ambient conditions. The approach overcomes the inherent limitations of traditional thermal processes, including high energy consumption, elevated temperatures, and limited selectivity.

The core innovation of PDHP lies in engineering non-equilibrium plasma kinetics to create a bimodal, non-Maxwellian electron energy distribution function (EEDF). This dual distribution enables two distinct electron populations: "hot" electrons (10–60 eV) that selectively dissociate C-H bonds to produce desired radical intermediates, and "cold" electrons (0.5–3 eV) that induce molecular vibrations to promote radical coupling and aromatic ring formation without causing further fragmentation.

To maximize selectivity, this process is synergistically integrated with advanced catalysts, such as zeolites (e.g., ZSM-5) functionalized with metallic nanoparticles (e.g., Au or Ga). This plasma-catalyst synergy directs the reaction pathway towards cyclization, achieving BTX selectivity exceeding 75%, a significant improvement over conventional thermal methods.

The manuscript also addresses key challenges, including plasma instabilities and industrial scalability. It proposes advanced solutions such as the use of modulated magnetic fields and artificial intelligence (AI) algorithms, specifically reinforcement learning, to achieve real-time control and stabilization of the process.

In conclusion, PDHP is positioned as a revolutionary approach in green chemistry. It offers a sustainable, low-energy pathway for producing essential platform chemicals, opening new avenues for decarbonizing the natural gas sector and valorizing waste hydrocarbon streams.
DOI: 10.6084/m9.figshare.14429138
title: Additional file 2 of Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines

description: Additional file 2: Table S2. Drugs for which predictive genes were selected in more than 20 of 100 predictive gene sets
DOI: 10.6084/m9.figshare.14429141
title: Additional file 3 of Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines

description: Additional file 3: Table S3. The expression level of C19orf33 in cancer cell lines was positively correlated with the ln (IC50) values of more than 100 drugs for those cell lines
DOI: 10.6084/m9.figshare.14429141.v1
title: Additional file 3 of Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines

description: Additional file 3: Table S3. The expression level of C19orf33 in cancer cell lines was positively correlated with the ln (IC50) values of more than 100 drugs for those cell lines
DOI: 10.6084/m9.figshare.14429147
title: Additional file 5 of Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines

description: Additional file 5: Table S4. Predicted pan-tumor median ln (IC50) values for tumor and normal samples
DOI: 10.6084/m9.figshare.14429150
title: Additional file 6 of Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines

description: Additional file 6: Table S5. Predicted ln (IC50) values for all TCGA RNA-seq samples
DOI: 10.6084/m9.figshare.14429138.v1
title: Additional file 2 of Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines

description: Additional file 2: Table S2. Drugs for which predictive genes were selected in more than 20 of 100 predictive gene sets
DOI: 10.6084/m9.figshare.14429150.v1
title: Additional file 6 of Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines

description: Additional file 6: Table S5. Predicted ln (IC50) values for all TCGA RNA-seq samples
DOI: 10.6084/m9.figshare.14429153
title: Additional file 7 of Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines

description: Additional file 7: Table S6. Drugs that were predicted to be specific to tumor type(s)
DOI: 10.5281/zenodo.10664518
title: ChEMBL-v33 LogD structure activity

description: This is an update of the dataset for the previously published manuscript A confidence predictor for logD using conformal regression and a support-vector machine. The main update is that it is based on a newer version of ChEMBL (v33, May 2023). The dataset consists of 2,311,523 chemical structures and the LogP property from ChEMBLS is CX LogD 7.4. The data was extracted following the procedure outlined in download data.
DOI: 10.5281/zenodo.10664519
title: ChEMBL-v33 LogD structure activity

description: This is an update of the dataset for the previously published manuscript A confidence predictor for logD using conformal regression and a support-vector machine. The main update is that it is based on a newer version of ChEMBL (v33, May 2023). The dataset consists of 2,311,523 chemical structures and the LogP property from ChEMBLS is CX LogD 7.4. The data was extracted following the procedure outlined in download data.
DOI: 10.5281/zenodo.10664564
title: Topical Isoxsuprine Ointment in ‎Mice
DOI: 10.5281/zenodo.10664565
title: Topical Isoxsuprine Ointment in ‎Mice
DOI: 10.6084/m9.figshare.14429153.v1
title: Additional file 7 of Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines

description: Additional file 7: Table S6. Drugs that were predicted to be specific to tumor type(s)
DOI: 10.6084/m9.figshare.8137706
title: Reconstruction ensembles

description: Global mean surface temperature reconstructions. Each file is the 1000 member ensemble from one method.File names are methods abbreviations as in the paper; tab separated, members in columns, first column years CE.<br>
DOI: 10.6084/m9.figshare.7089137
title: <i>Spongispora temasekensis</i>, a new boletoid genus and species from Singapore

description: Dipterocarp forests are a typical and widespread type of vegetation in tropical lowlands of southeast Asia that harbor a high diversity of ectomycorrhizal fungi, including boletes. Based on molecular and morphological characters, a unique bolete found in Singapore associated with the dipterocarp <i>Hopea odorata</i> was proven to represent a new species in the proposed new genus <i>Spongispora</i>. Phylogenetic analyses of five loci indicate that <i>Spongispora</i> is nested in the subfamily Leccinoideae of the Boletaceae, most closely related to an inclusive clade of <i>Leccinum, Leccinellum, Octaviania, Rossbeevera</i>, and <i>Turmalinea</i>. However, genetic distances between <i>Spongispora</i> and genera in Leccinoideae are mostly higher than that between any two known genera in this subfamily, which supports the proposal of a new genus. <i>Spongispora temasekensis</i> is characterized by a whitish to pale yellow hymenophore that stains brown where injured, coarsely reticulate stipe, interwoven trichodermial pileipellis, and broadly elliptical to ovoid basidiospores with sponge-like ornamentation perforated by irregular clefts, cracks, and warts under scanning electron microscopy. Morphological descriptions, illustrations, and comparisons with allied taxa are made, and a key to the genera of the subfamily Leccinoideae is provided.
DOI: 10.6084/m9.figshare.7089137.v2
title: <i>Spongispora temasekensis</i>, a new boletoid genus and species from Singapore

description: Dipterocarp forests are a typical and widespread type of vegetation in tropical lowlands of southeast Asia that harbor a high diversity of ectomycorrhizal fungi, including boletes. Based on molecular and morphological characters, a unique bolete found in Singapore associated with the dipterocarp <i>Hopea odorata</i> was proven to represent a new species in the proposed new genus <i>Spongispora</i>. Phylogenetic analyses of five loci indicate that <i>Spongispora</i> is nested in the subfamily Leccinoideae of the Boletaceae, most closely related to an inclusive clade of <i>Leccinum, Leccinellum, Octaviania, Rossbeevera</i>, and <i>Turmalinea</i>. However, genetic distances between <i>Spongispora</i> and genera in Leccinoideae are mostly higher than that between any two known genera in this subfamily, which supports the proposal of a new genus. <i>Spongispora temasekensis</i> is characterized by a whitish to pale yellow hymenophore that stains brown where injured, coarsely reticulate stipe, interwoven trichodermial pileipellis, and broadly elliptical to ovoid basidiospores with sponge-like ornamentation perforated by irregular clefts, cracks, and warts under scanning electron microscopy. Morphological descriptions, illustrations, and comparisons with allied taxa are made, and a key to the genera of the subfamily Leccinoideae is provided.
DOI: 10.6084/m9.figshare.7089137.v1
title: <i>Spongispora temakensi</i>s, a new boletoid genus and species from Singapore

description: Dipterocarp forests are a typical and widespread type of vegetation in tropical lowlands of southeast Asia that harbor a high diversity of ectomycorrhizal fungi, including boletes. Based on molecular and morphological characters, a unique bolete found in Singapore associated with the dipterocarp <i>Hopea odorata</i> was proven to represent a new species in the proposed new genus <i>Spongispora</i>. Phylogenetic analyses of five loci indicate that <i>Spongispora</i> is nested in the subfamily Leccinoideae of the Boletaceae, most closely related to an inclusive clade of <i>Leccinum, Leccinellum, Octaviania, Rossbeevera</i>, and <i>Turmalinea</i>. However, genetic distances between <i>Spongispora</i> and genera in Leccinoideae are mostly higher than that between any two known genera in this subfamily, which supports the proposal of a new genus. <i>Spongispora temasekensis</i> is characterized by a whitish to pale yellow hymenophore that stains brown where injured, coarsely reticulate stipe, interwoven trichodermial pileipellis, and broadly elliptical to ovoid basidiospores with sponge-like ornamentation perforated by irregular clefts, cracks, and warts under scanning electron microscopy. Morphological descriptions, illustrations, and comparisons with allied taxa are made, and a key to the genera of the subfamily Leccinoideae is provided.
DOI: 10.6084/m9.figshare.8137715
title: input_data.zip

description: Input data for the reconstructions and required datasets and code to generate the figures in the paper.<br>Proxy data used for the reconstructions:<br> proxy_ama_2.0.0_PAGES-crit-regional+FDR.txt: PAGES2k v2.0.0 proxy records, R-FDR screened subset (See PAGES2k Consortium, 2017, Scientific Data, doi: 10.1038/sdata.2017.88). Data are tab separated, the first column is the "paleoData_TSid" to identify each record in the metadata file. First row is year CE.<br> metadata_2.0.0_PAGES-crit-regional+FDR.txt: According metadatam tab separated. Contains a selection of PAGES2k v.2.0.0 database fields in each row: dataSetName, geo_latitude, geo_longitude, archiveType, resMed (Median resolution in years), paleoData_TSid (the column header in the data files).<br> proxy_ama_2.0.0_HR-0.67_infilled_DINEOF_1850-2000_PAGES-crit-regional+FDR.txt: high-resolution (annual and higher) and infilled (calibration period) subset of the proxy data used for the PCR and CPS methods (210 records), see Methods section.<br> <br> Instrumental target:<br> had4_krig_ama_v2_0_0.txt: April to March aggregated target used for the reconstructions. Space separated, no column headers. Newest updated data available at: http://www-users.york.ac.uk/~kdc3/papers/coverage2013/had4_krig_v2_0_0.txt<br> <br> Climate model data used for Figs. 2-4:<br> Models_fullforced_Past1000_GMST_AprMAr.RData: R Workspace containing the model data as time series over the April-March seasonal window, to be consistent with the reconstructions. colnames(models.ama.fullforced) identifies the name of each simulation. Details see Methods section.<br> Models_ctrl_GMST_AprMar.RData: Model control runs. Same format as model data described above.<br> <br> Forcing data:<br> forcing2.csv: Global mean forcing datasets, semicolon separated. Columns: Year CE, CO2, Volcanic, Solar<br> README_forcing.md: Further information about the forcing datasets (sources etc).<br> <br> Further results used to generate the Figures:<br> ebm_results_volc_vs_all_forcing300.RData: Results from the Energy Balance Model for Fig. 4a<br> DandA_CESM_ens_30-200.RData: Results from the D&A analysis for Fig. 3<br> recons.ARnoise.RData: Noise-proxy reconstructions for Figure 4b<br><br> Figs_gmst.R: R script to generate the Figures<br> R-functions_gmst.R Functions required to run Figs_gmst.R<br><br>
DOI: 10.6084/m9.figshare.12332033.v1
title: Additional file 1 of Proteome profile changes during poly-hydroxybutyrate intracellular mobilization in gram positive Bacillus cereus tsu1

description: Additional file 1 Table S1. Proteins identified and their normalized abundances in Bacillus cereus tsu1 in 12 h-, 24 h-, and 48 h-culture.
DOI: 10.6084/m9.figshare.12332039
title: Additional file 2 of Proteome profile changes during poly-hydroxybutyrate intracellular mobilization in gram positive Bacillus cereus tsu1

description: Additional file 2 Table S2–1. Significantly changed proteins identified in pair of 24 h:12 h and 48 h:12 h. Table S2–2. EMP, PP, TCA enzymes and their average abundance in three time-point samples. Table S2–3. Enzymes in butanoate and pyruvate anaerobic metabolism and the abundance at three different time points. Table S2–4. Significantly changed proteins related with sporulation. Table S2–5. Protein abundance of enzymes involved in oxidative phosphorylation and anaerobic/nitrate respiration. Table S2–6. PHB biosynthesis and intracellular degradation enzymes and their average abundance in three time-point samples.
DOI: 10.6084/m9.figshare.12332033
title: Additional file 1 of Proteome profile changes during poly-hydroxybutyrate intracellular mobilization in gram positive Bacillus cereus tsu1

description: Additional file 1 Table S1. Proteins identified and their normalized abundances in Bacillus cereus tsu1 in 12 h-, 24 h-, and 48 h-culture.