cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xa2hvr
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidagathis randii S.Moore"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042669-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23728/b2share.44465907ad7548ecb6b5f1d45bf48ba6
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: PM1 (07h CET) (clipped PNG)

description: PNG image representing clipped interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of PM1, aggregated by hour (07h CET).
DOI: 10.23728/b2share.6d98e5c08faa40bf83c2352364b93c03
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: PM2.5 (07h CET) (interpolated GeoTIFF)

description: GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of PM2.5, aggregated by hour (07h CET).
DOI: 10.23728/b2share.08d9f6be36d048529552fc5e93e2fde8
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: PM2.5 (07h CET) (clipped GeoTIFF)

description: Clipped GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of PM2.5, aggregated by hour (07h CET).
DOI: 10.23728/b2share.6f92b2b48ab0467ea466b36bdd4ae32e
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO in 2015 (02h CET) (interpolated GeoTIFF)

description: GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide during 2015, aggregated by hour (02h CET).
DOI: 10.23728/b2share.05ff112b14d14146a2bf4e937260cf4c
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: PM2.5 (07h CET) (clipped PNG)

description: PNG image representing clipped interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of PM2.5, aggregated by hour (07h CET).
DOI: 10.23728/b2share.6a7ca27f043d4a39aaeb76ded4604bae
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: humidity (09h CET) (interpolated PNG)

description: PNG image representing interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of humidity, aggregated by hour (09h CET).
DOI: 10.23728/b2share.fb739518fd3c40e8b86912feffe1b3a1
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: PM10 (07h CET) (interpolated PNG)

description: PNG image representing interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of PM10, aggregated by hour (07h CET).
DOI: 10.23728/b2share.a9c979d1af3c4808a97fd728a7cc889c
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: PM10 (07h CET) (clipped GeoTIFF)

description: Clipped GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of PM10, aggregated by hour (07h CET).
DOI: 10.23728/b2share.4ccb4e431d3a47ffae211632e66e8ed5
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: PM10 (07h CET) (clipped PNG)

description: PNG image representing clipped interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of PM10, aggregated by hour (07h CET).
DOI: 10.23728/b2share.3021c3d644a84cb5841aa79f27b14153
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO in 2015 (02h CET) (interpolated PNG)

description: PNG image representing interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide during 2015, aggregated by hour (02h CET).
DOI: 10.23728/b2share.648178fff882402ab96a52218e562d91
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: temperature and humidity (08h CET) (shapefile)

description: Shapefile including air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of temperature and humidity, aggregated by hour (08h CET).
DOI: 10.23728/b2share.e95b02b169ce48c69697fc0596eecb2f
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: temperature (08h CET) (interpolated PNG)

description: PNG image representing interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of temperature, aggregated by hour (08h CET).
DOI: 10.23728/b2share.624327749a0342e3bc3347c958fe475d
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: NO (08h CET) (interpolated GeoTIFF)

description: GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of nitrogen monoxide, aggregated by hour (08h CET).
DOI: 10.23728/b2share.4c9cb9ab8e95455a9a1a48d08f5bda90
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: temperature (08h CET) (interpolated GeoTIFF)

description: GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of temperature, aggregated by hour (08h CET).
DOI: 10.23728/b2share.6bfbf17c65c141f0b6dcc3c903fe6fae
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: temperature (08h CET) (clipped GeoTIFF)

description: Clipped GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of temperature, aggregated by hour (08h CET).
DOI: 10.23728/b2share.c5f040dad97b4d4e9d05445777e4719b
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: temperature (08h CET) (clipped PNG)

description: PNG image representing clipped interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of temperature, aggregated by hour (08h CET).
DOI: 10.5258/soton/d2293
title: Datasets in support of Southampton Doctoral Thesis 'Investigating the regulation, function, and clinical significance of PDCD4 in B-cell neoplasms'

description: Dataset to support Doctoral thesis entitled: Investigating the regulation, function, and clinical significance of PDCD4 in B-cell neoplasms

This dataset series contains:
Figures: emf files showing individual figures for thesis results chapters
Blots: Individual western blot images for immunoblotting experiments
LogFC: RNAseq log fold change values from experiments

Related projects/Funders:
MRC (PhD sponsor), CRUK (lab funder)

Related publication:
Joe Taylor et al (2022) B-cell receptor signaling induces proteasomal degradation of PDCD4 via MEK1/2 and mTORC1 in malignant B cells,
Cellular Signalling, Vol 94, 2022, 110311,
ISSN 0898-6568,
https://doi.org/10.1016/j.cellsig.2022.110311.
DOI: 10.23728/b2share.133b3597dd0f469a9109303970d6089e
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO at 08h CET (dataset)

description: csv file including air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide, aggregated by hour (08h CET).
DOI: 10.23728/b2share.ac9f2f3689fd4fd4b1ae620c1f2a25a5
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: humidity (09h CET) (clipped GeoTIFF)

description: Clipped GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of humidity, aggregated by hour (09h CET).
DOI: 10.23728/b2share.cb309deabdf04cc9abffed064fe2203a
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO (08h CET) (shapefile)

description: Shapefile including air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide, aggregated by hour (08h CET).
DOI: 10.23728/b2share.bb68a8cc359e44798194524d50bb1ac1
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO (08h CET) (interpolated GeoTIFF)

description: GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide, aggregated by hour (08h CET).
DOI: 10.23728/b2share.e96a5e2652444969bac34251f75a70d0
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO (08h CET) (interpolated PNG)

description: PNG image representing interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide, aggregated by hour (08h CET).
DOI: 10.23728/b2share.37dd1adaa2554cf894594c911593ccde
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO (08h CET) (clipped GeoTIFF)

description: Clipped GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide, aggregated by hour (08h CET).
DOI: 10.15468/dl.3y5qkk
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Launaea benadirensis Chiov."
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042670-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrkjxk
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lindera meissneri Hook.fil."
 ]
}

 The dataset includes 31 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042672-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23728/b2share.b151d36e9a02486ea42ce9252ceb412c
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO (08h CET) (clipped PNG)

description: PNG image representing clipped interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide, aggregated by hour (08h CET).
DOI: 10.23728/b2share.321b2a5deba5499c8bf816d2acc51e71
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: NO2 at 08h CET (dataset)

description: csv file including air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of nitrogen dioxide, aggregated by hour (08h CET).
DOI: 10.23728/b2share.b11eee0e2d92407982b1d97b626c5a21
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: PM1, PM2.5 and PM10 (23h UTC) (shapefile)

description: Shapefile including air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of PM1, PM2.5 and PM10 particles, aggregated by hour (23h UTC).
DOI: 10.15468/dl.qr9tnk
title: Occurrence Download

description: A dataset containing 559447 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Rumex acetosella L.)"
 ]
}

 The dataset includes 559447 records from 2653 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042645-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25387/g3.7823987.v2
title: Supplemental Material for Chen et al., 2019

description: Five supplementary tables: S1 Contig length and depth; S2 Functional annotation; S3 Secreted protein genes; S4 Variants in secreted protein genes; S5 Candidates for Avirulence genes
DOI: 10.25387/g3.8137763
title: Supplemental Material for Dong et al., 2019

description: The attached supplementary table includes six sheets, which show the genotyping prime sequences, sgRNA sequences, and predicted off-targets for each sgRNA.
DOI: 10.25387/g3.8137763.v1
title: Supplemental Material for Dong et al., 2019

description: The attached supplementary table includes six sheets, which show the genotyping prime sequences, sgRNA sequences, and predicted off-targets for each sgRNA.
DOI: 10.25386/genetics.7882973.v2
title: Supplemental Material for Xue et al., 2019

description: Supplemental figures and table.
DOI: 10.6084/m9.figshare.9116864.v2
title: Bivariate Residual Plots With Simulation Polygons

description: When using univariate models, goodness of fit can be assessed through many different methods, including graphical tools such as half-normal plots with a simulation envelope. This is straightforward due to the notion of ordering of a univariate sample, which can readily reveal possible outliers. In the bivariate case, however, it is often difficult to detect extreme points and verify whether a sample of residuals is a reasonable realization from a fitted model. We propose a new framework, implemented as the bivrp R package, available on CRAN. Our framework uses the same principles of the simulation envelope in a half-normal plot, but as a simulation polygon for each point in a bivariate sample. By using algorithms of convex hull construction and polygon area reduction, we describe how our method works and illustrate its functionality with examples using simulated bivariate normal data and real bivariate count data. We show how different model diagnostics can produce different results and pinpoint potential drawbacks of our approach, such as the limitations in terms of computational burden. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.3761562.v1223
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.9728555.v2
title: MOESM1 of Patients’ out-of-pocket expenses analysis of presurgical teledermatology

description: Additional file 1. Data used to estimate out-of-pocket expenses.
DOI: 10.6084/m9.figshare.9119015.v2
title: Reorganization of mcr-1-bearing large MDR plasmids resolved by nanopore sequencing

description: Three fused mcr-1-bearing plasmids with sizes 390532bp (pTLD91-1-390kb), 352115bp (pTLD91-1-352kb) and 297916bp (pTLD91-1-297kb) were deposited here for reference.
DOI: 10.6084/m9.figshare.9784376.v2
title: China national CO2 emission inventory (reference approach), 2016-2017

description: The dataset provides China national CO2 emission inventory (reference approach) from 2016-2017.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.6084/m9.figshare.9784388.v2
title: China provincial CO2 emission inventory (reference approach), 2016-2017

description: The dataset provides China provincial CO2 emission inventory (reference approach) from 2016-2017.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.6084/m9.figshare.9786212.v2
title: Water Quality for Kanahwa River WV

description: Data collection for three months (Jan-Mar, 2018) at three locations along the Kanawha River, WV
DOI: 10.6084/m9.figshare.3761562.v1226
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.3925794
title: Wildfire behaviour data for an experimental crown fire in thinned boreal black spruce, Alberta, Canada, 2019-05-11

description: Data describing an experimental forest fire in Wabasca, Alberta, Canada in May 2019. The fire is described in detail in the paper: "Recent Crown Thinning in a Boreal Black Spruce Forest Does Not Reduce Spread Rate nor Total Fuel Consumption: Results from an Experimental Crown Fire in Alberta, Canada" https://doi.org/10.3390/fire3030028
DOI: 10.5281/zenodo.3745537
title: Wildfire behaviour data for an experimental crown fire in thinned boreal black spruce, Alberta, Canada, 2019-05-11

description: Data describing an experimental forest fire in Wabasca, Alberta, Canada in May 2019. The fire is described in detail in the paper: "Recent Crown Thinning in a Boreal Black Spruce Forest Does Not Reduce Spread Rate nor Total Fuel Consumption: Results from an Experimental Crown Fire in Alberta, Canada" https://doi.org/10.3390/fire3030028
DOI: 10.25412/iop.9767282.v1
title: Augmented Training Data of H:Si(100)

description: This dataset contains images of the H:Si(100) surface, taken over several years on a Scienta Omicron Variable Temperature STM based at the University of Nottingham, UK.<br>These images were converted from their proprietary z_mtrx format from scan sizes up to 512x512 resolution, and classified into six categories by hand. They were then augmented with randomly with crops, pans, zooms, rotations and random amounts of random noise, scaling down to 128x128.
DOI: 10.25412/iop.9767282
title: Augmented Training Data of H:Si(100)

description: This dataset contains images of the H:Si(100) surface, taken over several years on a Scienta Omicron Variable Temperature STM based at the University of Nottingham, UK.<br>These images were converted from their proprietary z_mtrx format from scan sizes up to 512x512 resolution, and classified into six categories by hand. They were then augmented with randomly with crops, pans, zooms, rotations and random amounts of random noise, scaling down to 128x128.
DOI: 10.25387/g3.7123214.v1
title: Supplemental Material for Clay et al., 2019

description: Nucleotide sequences for the manuscript "Programmed chromosome deletion in the ciliate <i>Oxytricha trifallax".</i><br><br>Illumina sequencing reads from genomic sequencing of <i>Oxytricha trifallax </i>lines. The lines sequenced include programmed deletion lines (labeled with which chromosome is deleted), parental wild type JRB310, uninjected JRB310xJRB510 progeny, and control injection lines of JRB310xJRB510 progeny.
DOI: 10.25387/g3.9786281.v1
title: Supplemental Maetrial for Anderson et al., 2019

description: Figure S1: Breakdown of expressed TE families by family size. The proportion and count of TE families with (light blue) or without (dark blue) transcripts for helitrons (DH), TIRs (DT), and LTRs (RL). Families are categorized as small when they have 2-30 members, medium with 31-500 members, and large with &gt; 500 members. <br>Figure S2: TEs contribute to transcriptome dynamics across development in B73. A-B. Principal component analysis was used to plot libraries based on similarity of gene (A) or TE (B) transcript abundance. C. The tissue-specificity of expression was estimated with the tau metric, where low values indicate constitutive expression and high values indicate tissue-specific expression. Tau densities were plotted for helitron (DH), TIR (DT) and LTR (RL) TEs based on family size. Families are categorized as small when they have 2-30 members, medium with 31-500 members, and large with &gt; 500 members. <br><br>Figure S3: Dynamic transcript abundance patterns for expressed TE families in B73. A. Heat map showing the transcript abundance of all TE families detected in the tissue subset. Transcript abundance is normalized by row. B. Rank order plot of the proportion of reads per multi-member family (N = 1176) that are unique mapping. Proportions plotted are the average across all tissues with expression &gt; 1 RPM, and the x-axis is ordered by TE order and proportion unique. C-E. Examples of unique per-element expression patterns for three TE families expressed in the development subset. Libraries are ordered along the x-axis as in A.<br><br>Figure S4: TE transcripts across tissues are dynamic across genotypes. A. The number of TE families expressed (RPM &gt;= 1) is similar in B73 and the other NAM founder lines. B. TE families expressed in B73 also tend to be expressed in a large number of lines, while families not detected in B73 tend to be expressed in few lines. C. Breakdown of TEs detected in any genotype, with rare families detected in &lt; 5 genotypes and common families detected in at least 20 genotypes. <br><br>Figure S5: TE transcript dynamics across Recombinant inbred lines. A. Differentially expressed TE families were plotted, showing little relationship between the difference of members per family in the two parents and the expression difference observed. B. For multi-member TE families expressed specifically in B73 (N = ), the percent of RILs with detectable transcripts (RPM &gt; = 1) is shown. The peak at 50% suggests segregation of a single expressed locus among lines. C. The proportion of TEs in each group that segregate as a unimodal distribution among RILs. <br><br>Table of RNA-seq libraries and accession numbers used in this study.<br>
DOI: 10.25387/g3.7123214
title: Supplemental Material for Clay et al., 2019

description: Nucleotide sequences for the manuscript "Programmed chromosome deletion in the ciliate <i>Oxytricha trifallax".</i><br><br>Illumina sequencing reads from genomic sequencing of <i>Oxytricha trifallax </i>lines. The lines sequenced include programmed deletion lines (labeled with which chromosome is deleted), parental wild type JRB310, uninjected JRB310xJRB510 progeny, and control injection lines of JRB310xJRB510 progeny.