cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kysvz3
title: Occurrence Download

description: A dataset containing 161100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-78.63200489699994 15.600167468000052, -78.63958740299995 14.491088867000087, -78.60888671899994 14.466125488000046, -78.30139160099992 14.214294434000067, -78.14770507799994 14.16827392600004, -78.00939941399992 14.16827392600004, -78.01481690399993 12.495220892000077, -78.99197807399992 12.499098515000071, -78.99973332099995 11.824391993000063, -80.0001602339999 11.824391993000063, -80.00738525399993 10.986694336000085, -81.2523803709999 11.002075195000089, -81.6171293139999 10.820087457000056, -82.23367148099993 10.816209833000073, -82.23754910399992 10.975192405000087, -82.00489168199994 10.97519240400004, -81.99764706899992 14.998945063000065, -79.92869471699993 14.995397464000064, -79.9306030269999 15.37030029300007, -79.9310878469999 15.581951580000066, -79.96878976999994 15.690868244000058, -79.99392438399991 15.749515680000059, -80.01068079399994 15.803974012000083, -80.01296592199992 15.855580712000062, -79.97792182799992 15.915455142000042, -79.97758265699991 15.916191337000043, -79.97704243299995 15.917346786000053, -79.97649571799991 15.918499177000058, -79.97594252999994 15.919648476000077, -79.97538288599992 15.920794644000068, -79.9748168019999 15.92193764600006, -79.9742442989999 15.923077446000036, -79.97366539299992 15.924214008000092, -79.9730801039999 15.925347294000062, -79.97248844899991 15.926477271000067, -79.97189044599992 15.927603902000044, -79.97128611699992 15.92872715100009, -79.97067547799992 15.92984698400005, -79.97005854999992 15.930963363000046, -79.96943535199995 15.932076255000084, -79.9688059049999 15.933185624000089, -79.96817022599993 15.934291434000045, -79.96752833699992 15.935393651000084, -79.96688025899994 15.936492241000053, -79.96622601099995 15.93758716700006, -79.96556561499995 15.938678396000057, -79.9648990899999 15.939765893000072, -79.9642264599999 15.940849623000076, -79.96354774399992 15.94192955300008, -79.9628629639999 15.943005647000064, -79.96217214199993 15.944077873000083, -79.96147529899991 15.945146196000053, -79.96077245799995 15.946210582000049, -79.96006364099992 15.947270998000079, -79.95934887099992 15.948327411000037, -79.95862816899995 15.949379786000065, -79.95790155899994 15.95042809000006, -79.95716906399991 15.951472291000073, -79.95643070699992 15.952512354000078, -79.95568650999991 15.953548248000061, -79.95537702199994 15.953973971000039, -79.9439750549999 15.973454752000066, -79.8536987299999 16.074096680000082, -79.49192899899992 16.07474822200004, -79.48787275399991 16.17209812100009, -79.2850952149999 16.16632080100004, -79.2850952149999 16.074096680000082, -78.43122073299992 16.06866385400008, -78.43527697799993 15.602195591000054, -78.63200489699994 15.600167468000052))"
 ]
}

 The dataset includes 161100 records from 296 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232407-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zn8ncz
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypoxis pulchella G.L.Nesom"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251594-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3j829q
title: Occurrence Download

description: A dataset containing 2380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-42.34 -19.038,-41.54 -19.038,-41.54 -18.552,-42.34 -18.552,-42.34 -19.038))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2380 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230545-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ba8zht
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypoxis robusta Nel"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251598-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7987pc
title: Occurrence Download

description: A dataset containing 1708 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tricyrtis macropoda Miq."
 ]
}

 The dataset includes 1708 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234238-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kx5n8t
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria woodii J.M.Mercado"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122005-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fq2kp7
title: Occurrence Download

description: A dataset containing 424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paeonia ×suffruticosa Andrews",
 "HasCoordinate is true"
 ]
}

 The dataset includes 424 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040911-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10472227
title: Source data for analysis of super-enhancer interactomes v1

description: Super-enhancer interactomes from single-cells link clustering and transcription

Derek Le, Antonina Hafner, Sadhana Gaddam, Kevin Wang, Alistair Boettiger

This Zenodo repository contains data files associated with our analysis.

Software for processing the data is available in the associated github repository:  https://github.com/BoettigerLab/SEclustering-2024

Additional information can be found in the associated manuscript, currently in preparation -- once it is posted on BioRxiv, it will be linked here. 

This deposition currently includes1) SuperEnhancerLoci.xlsx - a master data table linking the genomic sequence barcode data from the corrected tables (described below) to the corresponding super-enhancer and their genomic coordinates in mm10.2) Corrected_Data_Tables_by_FOV.zip -- contains drift corrected and chromatically corrected x,y,z coordinates and cellular barcode data to track cell type and coordinate barcode data to identify genomic sequences. 3) Processed_Seq_Data.zip -- re-processed sequencing based data used in this study.4) FOF-CT_Spot_tables.zip -- draft versions of the 4DN FOF-CT formatted data-standard spot tables.  See data format description here: https://fish-omics-format.readthedocs.io/en/latest/ 5) Probe_Sequences.zip -- fasta files, bed files, and codebook tables for the RNA and DNA probe sequences used in this study.
DOI: 10.5281/zenodo.10472228
title: Source data for analysis of super-enhancer interactomes v1

description: Super-enhancer interactomes from single-cells link clustering and transcription

Derek Le, Antonina Hafner, Sadhana Gaddam, Kevin Wang, Alistair Boettiger

This Zenodo repository contains data files associated with our analysis.

Software for processing the data is available in the associated github repository:  https://github.com/BoettigerLab/SEclustering-2024

Additional information can be found in the associated manuscript, currently in preparation -- once it is posted on BioRxiv, it will be linked here. 

This deposition currently includes1) SuperEnhancerLoci.xlsx - a master data table linking the genomic sequence barcode data from the corrected tables (described below) to the corresponding super-enhancer and their genomic coordinates in mm10.2) Corrected_Data_Tables_by_FOV.zip -- contains drift corrected and chromatically corrected x,y,z coordinates and cellular barcode data to track cell type and coordinate barcode data to identify genomic sequences. 3) Processed_Seq_Data.zip -- re-processed sequencing based data used in this study.4) FOF-CT_Spot_tables.zip -- draft versions of the 4DN FOF-CT formatted data-standard spot tables.  See data format description here: https://fish-omics-format.readthedocs.io/en/latest/ 5) Probe_Sequences.zip -- fasta files, bed files, and codebook tables for the RNA and DNA probe sequences used in this study.
DOI: 10.15468/dl.m9anps
title: Occurrence Download

description: A dataset containing 85004 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Avena sterilis L."
 ]
}

 The dataset includes 85004 records from 438 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234236-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvtejy
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hedyotis laciniata Kaneh."
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238013-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9qjqs
title: Occurrence Download

description: A dataset containing 4847 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poecile montanus (Conrad von Baldenstein, 1827)",
 "DatasetKey is Observation.org, Nature data from around the World",
 "Country is one of (Germany, France, Spain, Portugal, Denmark, Austria, Italy, Switzerland, Greece, Poland, Hungary, Slovenia, Sweden, Norway, Slovakia, Montenegro, Croatia, North Macedonia, Serbia, Iceland, Ireland, United Kingdom of Great Britain and Northern Ireland, Albania, Bosnia and Herzegovina, Bulgaria, Belgium, Netherlands)"
 ]
}

 The dataset includes 4847 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178836-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmgchv
title: Occurrence Download

description: A dataset containing 2140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pauridia vaginata (Schltdl.) Snijman & Kocyan"
 ]
}

 The dataset includes 2140 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251614-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4at6s2
title: Occurrence Download

description: A dataset containing 5423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melanocorypha calandra (Linnaeus, 1766)",
 "DatasetKey is Observation.org, Nature data from around the World",
 "Country is one of (Germany, France, Spain, Portugal, Denmark, Austria, Italy, Switzerland, Greece, Poland, Hungary, Slovenia, Sweden, Norway, Slovakia, Montenegro, Croatia, North Macedonia, Serbia, Iceland, Ireland, United Kingdom of Great Britain and Northern Ireland, Albania, Bosnia and Herzegovina, Bulgaria, Belgium, Netherlands)"
 ]
}

 The dataset includes 5423 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178855-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxttzv
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypoxis camerooniana Baker"
 ]
}

 The dataset includes 50 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251595-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xzgcjv
title: Occurrence Download

description: A dataset containing 209 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lichtensteinia interrupta E.Mey."
 ]
}

 The dataset includes 209 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009005-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hj558k
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen, Living Specimen, Occurrence evidence)",
 "DatasetKey is one of (iNaturalist Research-grade Observations, The Fungal Literature-based Occurrence Database for the Southern West Siberia (Russia ), University of Tennessee Fungal Herbarium, Crowdsourcing fungal biodiversity: revision of inaturalist observations in Northwestern Siberia, Field Museum of Natural History (Botany) Fungi Collection)",
 "Geometry POLYGON((40 40,100 40,100 60,40 60,40 40))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "MediaType is Image",
 "TaxonKey is Amanita phalloides (Vaill. ex Fr.) Link"
 ]
}

 The dataset includes 52 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178837-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wjxn8
title: Occurrence Download

description: A dataset containing 348 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypoxis wrightii (Baker) Brackett"
 ]
}

 The dataset includes 348 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251616-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9bzaz
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora anfracta Mast. & André"
 ]
}

 The dataset includes 31 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178844-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2z36g3
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Licuala bacularia Becc."
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009015-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j79bn9
title: Occurrence Download

description: A dataset containing 8557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Remiz pendulinus (Linnaeus, 1758)",
 "DatasetKey is Observation.org, Nature data from around the World",
 "Country is one of (Germany, France, Spain, Portugal, Denmark, Austria, Italy, Switzerland, Greece, Poland, Hungary, Slovenia, Sweden, Norway, Slovakia, Montenegro, Croatia, North Macedonia, Serbia, Iceland, Ireland, United Kingdom of Great Britain and Northern Ireland, Albania, Bosnia and Herzegovina, Bulgaria, Belgium, Netherlands)"
 ]
}

 The dataset includes 8557 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178851-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69f2vx
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lampris megalopsis Underkoffler, Luers, Hyde & Craig, 2018"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122004-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xv7ezb
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Dubai Turtle Rehabilitation Project (aggregated per 1-degree cell)"
 ]
}

 The dataset includes 130 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178845-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4twwet
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa erectifolia Hitchc."
 ]
}

 The dataset includes 48 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087599-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jx3ms7
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Disporopsis longifolia Craib"
 ]
}

 The dataset includes 154 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178853-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wezvk2
title: Occurrence Download

description: A dataset containing 740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Udara dilectus (Moore, 1879)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 740 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064474-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xqxezb
title: Occurrence Download

description: A dataset containing 1465 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hedera nepalensis var. sinensis (Tobler) Rehder"
 ]
}

 The dataset includes 1465 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178859-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ttxz7
title: Occurrence Download

description: A dataset containing 4858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Spain",
 "Geometry POLYGON((3.51942 40.74948,1.54599 40.00718,0.74937 39.24677,1.2382 38.251,1.94558 38.17729,3.50261 38.2135,4.13628 38.91959,4.80616 39.55327,4.80616 40.09641,4.24491 40.54904,3.73797 40.7844,3.51942 40.74948))",
 "PublishingOrg is e37fc40e-0541-4ffa-8a4c-0426d73804e8",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 4858 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282081-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3vyts
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acteocina decurrens (A.E.Verrill & K.J.Bush, 1900)"
 ]
}

 The dataset includes 35 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184349-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvywdc
title: Occurrence Download

description: A dataset containing 707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is China",
 "TaxonKey is Grus monacha Temminck, 1835",
 "Year 1923-2023"
 ]
}

 The dataset includes 707 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282083-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6n59s8
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Hooveria purpurea var. reducta (Hoover) D.W.Taylor & D.J.Keil, Chlorogalum purpureum var. reductum Hoover)"
 ]
}

 The dataset includes 56 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230546-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ps3g5
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Betula ashburneri McAll. & Rushforth"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282074-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfmj4j
title: Occurrence Download

description: A dataset containing 65541 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hibiscus syriacus L."
 ]
}

 The dataset includes 65541 records from 365 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178862-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7dynh3
title: Occurrence Download

description: A dataset containing 32903 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "TypeStatus is one of (Unspecified type, Cotype, Epitype, Exepitype, Exholotype, Exhisotype, Exneotype, Extype, Hapantotype, Holotype, Isolectotype, Isoneotype, Isosyntype, Isotype, Lectotype, Neotype, Syntype, Notatype)"
 ]
}

 The dataset includes 32903 records from 427 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044799-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18112/openneuro.ds005123.v1.1.1
title: Social Reward and Aging: An Interim Multi-echo fMRI and Diffusion Dataset