cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12051501.v1
title: Data.xlsx

description: Original dataset of Sekimon plot (Ogasawara Islands) in Abe et al.
DOI: 10.6084/m9.figshare.12051915.v2
title: Single-cell transcriptomics of mesenchymal stem/stromal cells from human umbilical cord

description: Mesenchymal stem/stromal cells (MSCs) demonstrate great therapeutic potential in regenerative medicine. However, the differences between the transcriptome of MSCs from umbilical cord tissue and in vitro cell culture at single-cell level remain elusive. We obtained a large-scale single-cell transcriptome of total 19221 single cells from human umbilical cord Wharton's jelly tissue and the matched culture-expanded MSCs from three donors to provide a high quality transcriptomic profiling dataset at single-cell resolution, which is a valuable resource for dissecting the MSCs heterogeneity, cell fate decision in native tissue niche and in vitro culture environment for specific lineages.
DOI: 10.6084/m9.figshare.12051477
title: Additional file 5 of Transcriptome profiling of non-climacteric ‘yellow’ melon during ripening: insights on sugar metabolism

description: Additional file 5: Table S4. Gene ontology enrichment analysis of young and mature melon DE genes. This analysis was performed using FDR (false discovery rate) adjusted p-value
DOI: 10.6084/m9.figshare.12051477.v1
title: Additional file 5 of Transcriptome profiling of non-climacteric ‘yellow’ melon during ripening: insights on sugar metabolism

description: Additional file 5: Table S4. Gene ontology enrichment analysis of young and mature melon DE genes. This analysis was performed using FDR (false discovery rate) adjusted p-value
DOI: 10.6084/m9.figshare.12051453
title: Additional file 1 of Transcriptome profiling of non-climacteric ‘yellow’ melon during ripening: insights on sugar metabolism

description: Additional file 1: Table S1. Count of number of reads per gene obtained by featureCounts software. Only reads with overlapping in a sigle gene were considered for RNA-seq analysis; Table S2. RNA-seq data analysis (diferential expression and statistical test).
DOI: 10.6084/m9.figshare.12051453.v1
title: Additional file 1 of Transcriptome profiling of non-climacteric ‘yellow’ melon during ripening: insights on sugar metabolism

description: Additional file 1: Table S1. Count of number of reads per gene obtained by featureCounts software. Only reads with overlapping in a sigle gene were considered for RNA-seq analysis; Table S2. RNA-seq data analysis (diferential expression and statistical test).
DOI: 10.6084/m9.figshare.12051399
title: Additional file 2 of Co-infection, reinfection and superinfection with Anaplasma phagocytophilum strains in a cattle herd based on ankA gene and multilocus sequence typing

description: Additional file 2: Table S2. a Nucleotide exchanges in five of the seven housekeeping genes (pheS, glyA, fumC, sucA, dnaN) and the ankA gene found in the four animals with simultaneous double infection with two different A. phagocytophilum strains. b Allel designation and ST found in the four animals with simultaneous double infection with two different A. phagocytophilum strains.
DOI: 10.6084/m9.figshare.12051405
title: Additional file 3 of Co-infection, reinfection and superinfection with Anaplasma phagocytophilum strains in a cattle herd based on ankA gene and multilocus sequence typing

description: Additional file 3: Table S3. Detection of A. phagocytophilum by PCR for all collection dates in the 15 heifers and results of the genetic characterization.
DOI: 10.6084/m9.figshare.12051405.v1
title: Additional file 3 of Co-infection, reinfection and superinfection with Anaplasma phagocytophilum strains in a cattle herd based on ankA gene and multilocus sequence typing

description: Additional file 3: Table S3. Detection of A. phagocytophilum by PCR for all collection dates in the 15 heifers and results of the genetic characterization.
DOI: 10.6084/m9.figshare.12051393
title: Additional file 1 of Co-infection, reinfection and superinfection with Anaplasma phagocytophilum strains in a cattle herd based on ankA gene and multilocus sequence typing

description: Additional file 1: Table S1. GenBank accession numbers of the housekeeping and ankA gene sequences from the 47 samples from the 15 heifers.
DOI: 10.6084/m9.figshare.12051399.v1
title: Additional file 2 of Co-infection, reinfection and superinfection with Anaplasma phagocytophilum strains in a cattle herd based on ankA gene and multilocus sequence typing

description: Additional file 2: Table S2. a Nucleotide exchanges in five of the seven housekeeping genes (pheS, glyA, fumC, sucA, dnaN) and the ankA gene found in the four animals with simultaneous double infection with two different A. phagocytophilum strains. b Allel designation and ST found in the four animals with simultaneous double infection with two different A. phagocytophilum strains.
DOI: 10.6084/m9.figshare.12051393.v1
title: Additional file 1 of Co-infection, reinfection and superinfection with Anaplasma phagocytophilum strains in a cattle herd based on ankA gene and multilocus sequence typing

description: Additional file 1: Table S1. GenBank accession numbers of the housekeeping and ankA gene sequences from the 47 samples from the 15 heifers.
DOI: 10.6084/m9.figshare.12051366
title: Additional file 1 of Sex-specific and shared expression profiles of vulnerability and resilience to trauma in brain and blood

description: Additional file 1. Supplementary methods with details on QC, data processing, and gene annotation steps.
DOI: 10.6084/m9.figshare.12051357
title: Additional file 2 of Loss of the neurodevelopmental disease-associated gene miR-146a impairs neural progenitor differentiation and causes learning and memory deficits

description: Additional file 2: Tables S1.
DOI: 10.6084/m9.figshare.12051366.v1
title: Additional file 1 of Sex-specific and shared expression profiles of vulnerability and resilience to trauma in brain and blood

description: Additional file 1. Supplementary methods with details on QC, data processing, and gene annotation steps.
DOI: 10.6084/m9.figshare.12051357.v1
title: Additional file 2 of Loss of the neurodevelopmental disease-associated gene miR-146a impairs neural progenitor differentiation and causes learning and memory deficits

description: Additional file 2: Tables S1.
DOI: 10.6084/m9.figshare.12051270
title: Additional file 7 of Google Health Trends performance reflecting dengue incidence for the Brazilian states

description: Additional file 7. Definition of 49 demographic variables showing an adjusted R squared higher than 0.6 on a pair-wise linear regression models.
DOI: 10.6084/m9.figshare.12051270.v1
title: Additional file 7 of Google Health Trends performance reflecting dengue incidence for the Brazilian states

description: Additional file 7. Definition of 49 demographic variables showing an adjusted R squared higher than 0.6 on a pair-wise linear regression models.
DOI: 10.6084/m9.figshare.12051234
title: Additional file 10 of Google Health Trends performance reflecting dengue incidence for the Brazilian states

description: Additional file 10. Description of variables selected according to different methods.
DOI: 10.6084/m9.figshare.12051234.v1
title: Additional file 10 of Google Health Trends performance reflecting dengue incidence for the Brazilian states

description: Additional file 10. Description of variables selected according to different methods.
DOI: 10.6084/m9.figshare.12051120
title: Additional file 3 of A naturally-occurring 22-bp coding deletion in Ugt86Dd reduces nicotine resistance in Drosophila melanogaster

description: Additional file 3. Contains R scripts allowing the results, including Fig. 2, from the manuscript to be recapitulated.
DOI: 10.6084/m9.figshare.12051120.v1
title: Additional file 3 of A naturally-occurring 22-bp coding deletion in Ugt86Dd reduces nicotine resistance in Drosophila melanogaster

description: Additional file 3. Contains R scripts allowing the results, including Fig. 2, from the manuscript to be recapitulated.
DOI: 10.6084/m9.figshare.12051111
title: Additional file 2 of A naturally-occurring 22-bp coding deletion in Ugt86Dd reduces nicotine resistance in Drosophila melanogaster

description: Additional file 2. Raw data from the embryo nicotine resistance assay. The “strain_id” column gives the name of the strain as used in the main text, and the “brief_lab_id” column gives a Macdonald lab identifier of each strain. The “replicate_vial” column gives a number encoding each within-strain/within-treatment replicate assay vial. The “media_treatment” column states whether the strain was assayed on control, no-nicotine media, or on nicotine-supplemented media. The “number_eggs” column defines the number of eggs used to seed each vial. Finally, the series of columns beginning with “number_emerged_adults_day” defines the number of adults that emerged on a particular day (9, 10, 11, 12, 13, 15) following egg collection.
DOI: 10.6084/m9.figshare.12051102
title: Additional file 1 of A naturally-occurring 22-bp coding deletion in Ugt86Dd reduces nicotine resistance in Drosophila melanogaster

description: Additional file 1. Raw data from the first instar larva nicotine resistance assay. The “strain_id” column gives the name of the strain as used in the main text, the “brief_lab_id” column gives a Macdonald lab identifier of each strain, and ”genotype_info” gives information about the allele present at the Ugt86Dd gene in the strain. The “media_treatment” column states whether the strain was assayed on control, no-nicotine media, or on nicotine-supplemented media. The “replicate_vial” column gives a number encoding each within-strain/within-treatment replicate assay vial, “number_first_instar_larvae” defines the number of larvae used to seed each vial, while “number_emerged_adults” is the number of adults emerging from the vial at day 14 following larval collection.
DOI: 10.6084/m9.figshare.12051111.v1
title: Additional file 2 of A naturally-occurring 22-bp coding deletion in Ugt86Dd reduces nicotine resistance in Drosophila melanogaster

description: Additional file 2. Raw data from the embryo nicotine resistance assay. The “strain_id” column gives the name of the strain as used in the main text, and the “brief_lab_id” column gives a Macdonald lab identifier of each strain. The “replicate_vial” column gives a number encoding each within-strain/within-treatment replicate assay vial. The “media_treatment” column states whether the strain was assayed on control, no-nicotine media, or on nicotine-supplemented media. The “number_eggs” column defines the number of eggs used to seed each vial. Finally, the series of columns beginning with “number_emerged_adults_day” defines the number of adults that emerged on a particular day (9, 10, 11, 12, 13, 15) following egg collection.
DOI: 10.6084/m9.figshare.12051102.v1
title: Additional file 1 of A naturally-occurring 22-bp coding deletion in Ugt86Dd reduces nicotine resistance in Drosophila melanogaster

description: Additional file 1. Raw data from the first instar larva nicotine resistance assay. The “strain_id” column gives the name of the strain as used in the main text, the “brief_lab_id” column gives a Macdonald lab identifier of each strain, and ”genotype_info” gives information about the allele present at the Ugt86Dd gene in the strain. The “media_treatment” column states whether the strain was assayed on control, no-nicotine media, or on nicotine-supplemented media. The “replicate_vial” column gives a number encoding each within-strain/within-treatment replicate assay vial, “number_first_instar_larvae” defines the number of larvae used to seed each vial, while “number_emerged_adults” is the number of adults emerging from the vial at day 14 following larval collection.
DOI: 10.6084/m9.figshare.12051033
title: Additional file 3 of A cross-sectional study of website claims related to diagnoses and treatment of non-musculoskeletal conditions

description: Additional file 3. Copy of dataset.
DOI: 10.6084/m9.figshare.12051033.v1
title: Additional file 3 of A cross-sectional study of website claims related to diagnoses and treatment of non-musculoskeletal conditions

description: Additional file 3. Copy of dataset.
DOI: 10.6084/m9.figshare.12051003
title: Additional file 1 of Can metagenomic next-generation sequencing identify the pathogens responsible for culture-negative prosthetic joint infection?

description: Additional file 1. Demographic characteristics of the patients in the EA and TA groups.
DOI: 10.6084/m9.figshare.12051003.v1
title: Additional file 1 of Can metagenomic next-generation sequencing identify the pathogens responsible for culture-negative prosthetic joint infection?

description: Additional file 1. Demographic characteristics of the patients in the EA and TA groups.
DOI: 10.6084/m9.figshare.12050988
title: Additional file 3 of Characterising the mechanisms underlying genetic resistance to amoebic gill disease in Atlantic salmon using RNA sequencing

description: Additional file 3. Phenotypes of all samples used for RNA sequencing. All collected phenotypes for the samples used in this study. ID of the sample, tissue, whether it is resistant or susceptible, finclip ID linking to the genotypes (available in Robledo et al. 2018), gill scores for both gills (and mean), weight and length at the end of the challenge, and amoebic load measured by qPCR are shown.
DOI: 10.6084/m9.figshare.12050985
title: Additional file 2 of Characterising the mechanisms underlying genetic resistance to amoebic gill disease in Atlantic salmon using RNA sequencing

description: Additional file 2. Differentially expressed genes between resistant and susceptible samples. Lists of differentially expressed genes between resistant and susceptible samples in gill and head kidney. Gene ID, position in the Atlantic salmon genome (Chromosome, start and end in base pairs), average expression of the gene, log 2 fold change between resistant and susceptible animals (positive fold changes correspond to higher expression in resistant samples), standard deviation of the fold change, FDR adjusted p-value, gene annotation and gene symbol are shown.
DOI: 10.6084/m9.figshare.12050988.v1
title: Additional file 3 of Characterising the mechanisms underlying genetic resistance to amoebic gill disease in Atlantic salmon using RNA sequencing

description: Additional file 3. Phenotypes of all samples used for RNA sequencing. All collected phenotypes for the samples used in this study. ID of the sample, tissue, whether it is resistant or susceptible, finclip ID linking to the genotypes (available in Robledo et al. 2018), gill scores for both gills (and mean), weight and length at the end of the challenge, and amoebic load measured by qPCR are shown.
DOI: 10.6084/m9.figshare.12050985.v1
title: Additional file 2 of Characterising the mechanisms underlying genetic resistance to amoebic gill disease in Atlantic salmon using RNA sequencing

description: Additional file 2. Differentially expressed genes between resistant and susceptible samples. Lists of differentially expressed genes between resistant and susceptible samples in gill and head kidney. Gene ID, position in the Atlantic salmon genome (Chromosome, start and end in base pairs), average expression of the gene, log 2 fold change between resistant and susceptible animals (positive fold changes correspond to higher expression in resistant samples), standard deviation of the fold change, FDR adjusted p-value, gene annotation and gene symbol are shown.
DOI: 10.6084/m9.figshare.12050967
title: Additional file 3 of Preoperative anxiety in adults - a cross-sectional study on specific fears and risk factors

description: Additional file 3. A Modified numeric rating scale (mNRS) to assess specific fears - German version. German version of a mNRS used by study participants to rate their level of concern regarding 8 specific fears primarily associated with anesthesia. B English translation of Additional file 3A. see Additional file 3A.
DOI: 10.6084/m9.figshare.12050961
title: Additional file 2 of Preoperative anxiety in adults - a cross-sectional study on specific fears and risk factors

description: Additional file 2. A Modified numeric rating scale (mNRS) for anxiety assessment- German version. German version of a mNRS used by study participants to rate their level of anesthesia and surgery anxiety. B English translation of Additional file 2A. see Additional file 2A.
DOI: 10.6084/m9.figshare.12050967.v1
title: Additional file 3 of Preoperative anxiety in adults - a cross-sectional study on specific fears and risk factors

description: Additional file 3. A Modified numeric rating scale (mNRS) to assess specific fears - German version. German version of a mNRS used by study participants to rate their level of concern regarding 8 specific fears primarily associated with anesthesia. B English translation of Additional file 3A. see Additional file 3A.
DOI: 10.6084/m9.figshare.12050958
title: Additional file 1 of Preoperative anxiety in adults - a cross-sectional study on specific fears and risk factors

description: Additional file 1. A German version of the Amsterdam Preoperative Anxiety and Information Scale (APAIS), (Part B1 of the questionnaire). Wording of the German translation of the English version of the APAIS published by Moerman and colleagues [14] and validated by Berth and colleagues [19]. B English version of the Amsterdam Preoperative Anxiety and Information Scale (APAIS). Wording of the English version of the APAIS published by Moerman and colleagues [14]. Items have to be rated by participants on a 1 (not at all) to 5 (extremely) Likert scale.
DOI: 10.6084/m9.figshare.12050961.v1
title: Additional file 2 of Preoperative anxiety in adults - a cross-sectional study on specific fears and risk factors

description: Additional file 2. A Modified numeric rating scale (mNRS) for anxiety assessment- German version. German version of a mNRS used by study participants to rate their level of anesthesia and surgery anxiety. B English translation of Additional file 2A. see Additional file 2A.
DOI: 10.6084/m9.figshare.12050958.v1
title: Additional file 1 of Preoperative anxiety in adults - a cross-sectional study on specific fears and risk factors

description: Additional file 1. A German version of the Amsterdam Preoperative Anxiety and Information Scale (APAIS), (Part B1 of the questionnaire). Wording of the German translation of the English version of the APAIS published by Moerman and colleagues [14] and validated by Berth and colleagues [19]. B English version of the Amsterdam Preoperative Anxiety and Information Scale (APAIS). Wording of the English version of the APAIS published by Moerman and colleagues [14]. Items have to be rated by participants on a 1 (not at all) to 5 (extremely) Likert scale.
DOI: 10.6084/m9.figshare.12050904
title: Additional file 7 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 7: Appendix 7. selection of control gene-top100 from open TG-GATEs (gene_name, containing Dazap2, Ube2d3 and Gapdh).
DOI: 10.6084/m9.figshare.12050898
title: Additional file 6 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 6: Appendix 6. Gene expression profile (Exp/Cont) at 24 h and 29 days (log2) and calculation of PC1 with the formula.
DOI: 10.6084/m9.figshare.12050892
title: Additional file 5 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 5: Appendix 5. PC1 and PC2 of FFPE-AAF, FFPE-CRE and previous Open TG-GATEs results [14].
DOI: 10.6084/m9.figshare.12050898.v1
title: Additional file 6 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 6: Appendix 6. Gene expression profile (Exp/Cont) at 24 h and 29 days (log2) and calculation of PC1 with the formula.
DOI: 10.6084/m9.figshare.12050883
title: Additional file 4 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 4: Appendix 4. Ratio (exp/cont) log2. Open TG-GATEs (DNA microarry) and FFPE-RNA-Seq.
DOI: 10.6084/m9.figshare.12050883.v1
title: Additional file 4 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 4: Appendix 4. Ratio (exp/cont) log2. Open TG-GATEs (DNA microarry) and FFPE-RNA-Seq.
DOI: 10.6084/m9.figshare.12050874
title: Additional file 3 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 3: Appendix 3. Ratio (exp/cont) log2 calculated after Dazap2-normalized.
DOI: 10.6084/m9.figshare.12050874.v1
title: Additional file 3 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 3: Appendix 3. Ratio (exp/cont) log2 calculated after Dazap2-normalized.
DOI: 10.6084/m9.figshare.12050865
title: Additional file 2 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 2: Appendix 2. Log2 transferred data.
DOI: 10.6084/m9.figshare.12050859
title: Additional file 1 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 1:Appendix 1. Raw read number from 15 samples analyzed by MiniSeq.
DOI: 10.6084/m9.figshare.12050865.v1
title: Additional file 2 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 2: Appendix 2. Log2 transferred data.
DOI: 10.6084/m9.figshare.12050859.v1
title: Additional file 1 of Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens

description: Additional file 1:Appendix 1. Raw read number from 15 samples analyzed by MiniSeq.
DOI: 10.6084/m9.figshare.12050832
title: Additional file 4 of Comparison and improvement of the predictability and interpretability with ensemble learning models in QSPR applications

description: Additional file 4. The test set of fluorescence with descriptors.
DOI: 10.6084/m9.figshare.12050826
title: Additional file 2 of Comparison and improvement of the predictability and interpretability with ensemble learning models in QSPR applications

description: Additional file 2. The SDF file containing molecule structures of the fluorescence dataset.
DOI: 10.6084/m9.figshare.12050829
title: Additional file 3 of Comparison and improvement of the predictability and interpretability with ensemble learning models in QSPR applications

description: Additional file 3. The training set of fluorescence with descriptors.
DOI: 10.6084/m9.figshare.12050832.v1
title: Additional file 4 of Comparison and improvement of the predictability and interpretability with ensemble learning models in QSPR applications

description: Additional file 4. The test set of fluorescence with descriptors.
DOI: 10.6084/m9.figshare.12050826.v1
title: Additional file 2 of Comparison and improvement of the predictability and interpretability with ensemble learning models in QSPR applications

description: Additional file 2. The SDF file containing molecule structures of the fluorescence dataset.
DOI: 10.6084/m9.figshare.12050829.v1
title: Additional file 3 of Comparison and improvement of the predictability and interpretability with ensemble learning models in QSPR applications

description: Additional file 3. The training set of fluorescence with descriptors.
DOI: 10.6084/m9.figshare.12050808
title: Additional file 5 of Whole genome resequencing reveals an association of ABCC4 variants with preaxial polydactyly in pigs

description: Additional file 5: Table S5. The highly differentiated SNPs within the highly differentiated windows. The bold italic highlighted rows (*) represent the SNPs which identified in association test and for DAF analysis.