cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7819091
title: Additional file 2 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: t-SNE map of twenty 1000 Genomes Project populations. Interactive t-SNE map of twenty 1000 Genomes Project populations. File name: 1000G_t-SNE_20populations.html. The file can be viewed in a web browser with internet access. (HTML 589 kb)
DOI: 10.6084/m9.figshare.7819097.v1
title: Additional file 3 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: GTM projection, test set 1: Americans of African ancestry in SW USA (ASW). Projection of Americans of African ancestry in SW USA (black points) onto a GTM map trained with 10 principal components. File name: 1000G_GTM_projection_ASW.html. The file can be viewed in a web browser with internet access. (HTML 437 kb)
DOI: 10.6084/m9.figshare.7819085
title: Additional file 1 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: GTM map of twenty 1000 Genomes Project populations. Interactive GTM map of twenty 1000 Genomes Project populations. File name: 1000G_GTM_20populations.html. The file can be viewed in a web browser with internet access. (HTML 2416 kb)
DOI: 10.6084/m9.figshare.7819091.v1
title: Additional file 2 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: t-SNE map of twenty 1000 Genomes Project populations. Interactive t-SNE map of twenty 1000 Genomes Project populations. File name: 1000G_t-SNE_20populations.html. The file can be viewed in a web browser with internet access. (HTML 589 kb)
DOI: 10.6084/m9.figshare.7819085.v1
title: Additional file 1 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: GTM map of twenty 1000 Genomes Project populations. Interactive GTM map of twenty 1000 Genomes Project populations. File name: 1000G_GTM_20populations.html. The file can be viewed in a web browser with internet access. (HTML 2416 kb)
DOI: 10.6084/m9.figshare.7819076
title: Additional file 17 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: Arabidopsis map coloured by admixture group. Interactive map of 1135 Arabidopsis thaliana genomes from the 1001 Genomes project, coloured by admixture group. File name: worldmap_arabidopsis_admixed.html. The file can be viewed in a web browser with internet access. (HTML 571 kb)
DOI: 10.6084/m9.figshare.7819076.v1
title: Additional file 17 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: Arabidopsis map coloured by admixture group. Interactive map of 1135 Arabidopsis thaliana genomes from the 1001 Genomes project, coloured by admixture group. File name: worldmap_arabidopsis_admixed.html. The file can be viewed in a web browser with internet access. (HTML 571 kb)
DOI: 10.6084/m9.figshare.7819067
title: Additional file 16 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: Arabidopsis map coloured by country. Interactive map of 1135 Arabidopsis thaliana genomes from the 1001 Genomes project. File name: worldmap_arabidopsis_countries.html. The file can be viewed in a web browser with internet access. (HTML 571 kb)
DOI: 10.6084/m9.figshare.7819067.v1
title: Additional file 16 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: Arabidopsis map coloured by country. Interactive map of 1135 Arabidopsis thaliana genomes from the 1001 Genomes project. File name: worldmap_arabidopsis_countries.html. The file can be viewed in a web browser with internet access. (HTML 571 kb)
DOI: 10.6084/m9.figshare.7819049
title: Additional file 14 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: 5-fold cross-validated recall for five 1000 Genomes Project superpopulations (5 classes). Recall of optimized models for the following algorithms: SVM 10 PCs = support vector machine classification model using 10 principal components, PCA 8-NN = k-nearest neighbours model based on 2D PCA map (k = 8), GTM 3 or 10 PCs = bayesian classification model based on generative topographic mapping using 3 or 10 principal components. File name: recall_crossvalidation_5classes.html. (HTML 3 kb)
DOI: 10.6084/m9.figshare.7819049.v1
title: Additional file 14 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: 5-fold cross-validated recall for five 1000 Genomes Project superpopulations (5 classes). Recall of optimized models for the following algorithms: SVM 10 PCs = support vector machine classification model using 10 principal components, PCA 8-NN = k-nearest neighbours model based on 2D PCA map (k = 8), GTM 3 or 10 PCs = bayesian classification model based on generative topographic mapping using 3 or 10 principal components. File name: recall_crossvalidation_5classes.html. (HTML 3 kb)
DOI: 10.6084/m9.figshare.7819034
title: Additional file 12 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: 5-fold cross-validated recall for twenty 1000 Genomes Project populations (19 classes) using SVM, PCA or GTM. Recall of optimized models for the following algorithms: SVM 10 PCs = support vector machine classification model using 10 principal components, PCA 8-NN = k-nearest neighbours model based on 2D PCA map (k = 8), GTM 3 or 10 PCs = bayesian classification model based on generative topographic mapping using 3 or 10 principal components. File name: recall_crossvalidation_19classes.html. (HTML 8 kb)
DOI: 10.6084/m9.figshare.7819040
title: Additional file 13 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: 5-fold cross-validated precision for five 1000 Genomes Project superpopulations (5 classes). Precision of optimized models for the following algorithms: SVM 10 PCs = support vector machine classification model using 10 principal components, PCA 8-NN = k-nearest neighbours model based on 2D PCA map (k = 8), GTM 3 or 10 PCs = bayesian classification model based on generative topographic mapping using 3 or 10 principal components. File name: precision_crossvalidation_5classes.html. (HTML 3 kb)
DOI: 10.6084/m9.figshare.7819031
title: Additional file 11 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: 5-fold cross-validated precision for twenty 1000 Genomes Project populations (19 classes) using SVM, PCA or GTM. Precision of optimized models for the following algorithms: SVM 10 PCs = support vector machine classification model using 10 principal components, PCA 8-NN = k-nearest neighbours model based on 2D PCA map (k = 8), GTM 3 or 10 PCs = bayesian classification model based on generative topographic mapping using 3 or 10 principal components. File name: precision_crossvalidation_19classes.html. (HTML 7 kb)
DOI: 10.6084/m9.figshare.7819040.v1
title: Additional file 13 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: 5-fold cross-validated precision for five 1000 Genomes Project superpopulations (5 classes). Precision of optimized models for the following algorithms: SVM 10 PCs = support vector machine classification model using 10 principal components, PCA 8-NN = k-nearest neighbours model based on 2D PCA map (k = 8), GTM 3 or 10 PCs = bayesian classification model based on generative topographic mapping using 3 or 10 principal components. File name: precision_crossvalidation_5classes.html. (HTML 3 kb)
DOI: 10.6084/m9.figshare.7819025
title: Additional file 10 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: Variance explained in first principal components of genotype matrix. Variance explained in 100 first principal components of the genotype matrix for twenty 1000 Genomes Projects Populations, which were used as a training set to build our models. File name: varianceExplained.html. (HTML 13 kb)
DOI: 10.6084/m9.figshare.7819025.v1
title: Additional file 10 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: Variance explained in first principal components of genotype matrix. Variance explained in 100 first principal components of the genotype matrix for twenty 1000 Genomes Projects Populations, which were used as a training set to build our models. File name: varianceExplained.html. (HTML 13 kb)
DOI: 10.6084/m9.figshare.7819031.v1
title: Additional file 11 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: 5-fold cross-validated precision for twenty 1000 Genomes Project populations (19 classes) using SVM, PCA or GTM. Precision of optimized models for the following algorithms: SVM 10 PCs = support vector machine classification model using 10 principal components, PCA 8-NN = k-nearest neighbours model based on 2D PCA map (k = 8), GTM 3 or 10 PCs = bayesian classification model based on generative topographic mapping using 3 or 10 principal components. File name: precision_crossvalidation_19classes.html. (HTML 7 kb)
DOI: 10.6084/m9.figshare.7819034.v1
title: Additional file 12 of Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

description: 5-fold cross-validated recall for twenty 1000 Genomes Project populations (19 classes) using SVM, PCA or GTM. Recall of optimized models for the following algorithms: SVM 10 PCs = support vector machine classification model using 10 principal components, PCA 8-NN = k-nearest neighbours model based on 2D PCA map (k = 8), GTM 3 or 10 PCs = bayesian classification model based on generative topographic mapping using 3 or 10 principal components. File name: recall_crossvalidation_19classes.html. (HTML 8 kb)
DOI: 10.6084/m9.figshare.7818962
title: Additional file 4: of Introgression of Root and Water Use Efficiency Traits Enhances Water Productivity: An Evidence for Physiological Breeding in Rice (Oryza sativa L.)

description: Table S5. Genotyping of the selected TILs with SSR markers for Background genome recovery and their chromosomal positions. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7818962.v1
title: Additional file 4: of Introgression of Root and Water Use Efficiency Traits Enhances Water Productivity: An Evidence for Physiological Breeding in Rice (Oryza sativa L.)

description: Table S5. Genotyping of the selected TILs with SSR markers for Background genome recovery and their chromosomal positions. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7818938
title: Additional file 2: of Introgression of Root and Water Use Efficiency Traits Enhances Water Productivity: An Evidence for Physiological Breeding in Rice (Oryza sativa L.)

description: Table S4. Foreground genotyping of trait introgressed lines using associated markers for specific target traits. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.7818938.v1
title: Additional file 2: of Introgression of Root and Water Use Efficiency Traits Enhances Water Productivity: An Evidence for Physiological Breeding in Rice (Oryza sativa L.)

description: Table S4. Foreground genotyping of trait introgressed lines using associated markers for specific target traits. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.7818908
title: Additional file 1: of The impact of increasing education levels on rising life expectancy: a decomposition analysis for Italy, Denmark, and the USA

description: Basic data and life tables by educational attainment. (CSV 54 kb)
DOI: 10.6084/m9.figshare.7818890
title: Additional file 8: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S6. Annotation of differentially expressed genes in the comparison of â HL vs HCâ . HC: the population occurring in Hancheng; HL: the population occurring in the Helan Mountains (XLS 2152 kb)
DOI: 10.6084/m9.figshare.7818893
title: Additional file 9: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S7. Annotation of differentially expressed genes in the comparison of â HL vs FXâ . FX: the population occurring in Fengxiang; HL: the population occurring in the Helan Mountains (XLS 895 kb)
DOI: 10.6084/m9.figshare.7818884
title: Additional file 7: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S5. Annotation of differentially expressed genes in the comparison of â HC vs FXâ . FX: the population occurring in Fengxiang; HC: the population occurring in Hancheng (XLS 286 kb)
DOI: 10.6084/m9.figshare.7818890.v1
title: Additional file 8: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S6. Annotation of differentially expressed genes in the comparison of â HL vs HCâ . HC: the population occurring in Hancheng; HL: the population occurring in the Helan Mountains (XLS 2152 kb)
DOI: 10.6084/m9.figshare.7818893.v1
title: Additional file 9: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S7. Annotation of differentially expressed genes in the comparison of â HL vs FXâ . FX: the population occurring in Fengxiang; HL: the population occurring in the Helan Mountains (XLS 895 kb)
DOI: 10.6084/m9.figshare.7818884.v1
title: Additional file 7: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S5. Annotation of differentially expressed genes in the comparison of â HC vs FXâ . FX: the population occurring in Fengxiang; HC: the population occurring in Hancheng (XLS 286 kb)
DOI: 10.6084/m9.figshare.7818869
title: Additional file 5: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S4. Primers designed for detecting simple sequence repeats (SSRs) in genes of Subpsaltria yangi (XLS 7778 kb)
DOI: 10.6084/m9.figshare.7818869.v1
title: Additional file 5: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S4. Primers designed for detecting simple sequence repeats (SSRs) in genes of Subpsaltria yangi (XLS 7778 kb)
DOI: 10.6084/m9.figshare.7818830
title: Additional file 11: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S9. Candidate DEGs related to detoxification and oxidation-reduction (XLS 71 kb)
DOI: 10.6084/m9.figshare.7818833
title: Additional file 12: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S10. Candidate DEGs related to stress response, water-deprivation response and putative osmoregulation (XLS 82 kb)
DOI: 10.6084/m9.figshare.7818830.v1
title: Additional file 11: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S9. Candidate DEGs related to detoxification and oxidation-reduction (XLS 71 kb)
DOI: 10.6084/m9.figshare.7818833.v1
title: Additional file 12: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S10. Candidate DEGs related to stress response, water-deprivation response and putative osmoregulation (XLS 82 kb)
DOI: 10.6084/m9.figshare.7818824
title: Additional file 10: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S8. Candidate DEGs related to digestion (XLS 45 kb)
DOI: 10.6084/m9.figshare.7818824.v1
title: Additional file 10: of De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

description: Table S8. Candidate DEGs related to digestion (XLS 45 kb)
DOI: 10.6084/m9.figshare.7818758
title: MOESM7 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 7. Summary of CDSs containing SNPs unique to weakly haemolytic isolates identified in the core genome by genome-wide association studies. CDSs identified by locus ID in the B. hyodysenteriae WA1 reference genome.
DOI: 10.6084/m9.figshare.7818758.v1
title: MOESM7 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 7. Summary of CDSs containing SNPs unique to weakly haemolytic isolates identified in the core genome by genome-wide association studies. CDSs identified by locus ID in the B. hyodysenteriae WA1 reference genome.
DOI: 10.6084/m9.figshare.7818743
title: MOESM4 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 4. Summary of number of SNPs identified in the promoters of haemolysin-associated genes which are present only in weakly haemolytic isolates.
DOI: 10.6084/m9.figshare.7818746
title: MOESM5 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 5. CDSs identified by genome-wide association studies as unique to strongly or weakly haemolytic isolates. The % cover and % identity were determined by blastn.
DOI: 10.6084/m9.figshare.7818737
title: MOESM3 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 3. Amino acid substitutions in haemolysis-associated genes present only in weakly haemolytic B. hyodysenteriae isolates. Haemolysis-associated genes are identified by locus tag of the reference genome B. hyodysenteriae WA1 and name. Amino acid substitutions are presented using the amino acid single letter code: first letter is amino acid in B. hyodysenteriae WA1, number gives position and last letter is amino acid in weakly haemolytic isolate.
DOI: 10.6084/m9.figshare.7818746.v1
title: MOESM5 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 5. CDSs identified by genome-wide association studies as unique to strongly or weakly haemolytic isolates. The % cover and % identity were determined by blastn.
DOI: 10.6084/m9.figshare.7818737.v1
title: MOESM3 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 3. Amino acid substitutions in haemolysis-associated genes present only in weakly haemolytic B. hyodysenteriae isolates. Haemolysis-associated genes are identified by locus tag of the reference genome B. hyodysenteriae WA1 and name. Amino acid substitutions are presented using the amino acid single letter code: first letter is amino acid in B. hyodysenteriae WA1, number gives position and last letter is amino acid in weakly haemolytic isolate.
DOI: 10.6084/m9.figshare.7818743.v1
title: MOESM4 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 4. Summary of number of SNPs identified in the promoters of haemolysin-associated genes which are present only in weakly haemolytic isolates.
DOI: 10.6084/m9.figshare.7818728
title: MOESM2 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 2. B. hyodysenteriae strain sequence information, assembly statistics and gene content.
DOI: 10.6084/m9.figshare.7818716
title: MOESM1 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 1. Species identification results for the 39 isolates by various methods.
DOI: 10.6084/m9.figshare.7818728.v1
title: MOESM2 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 2. B. hyodysenteriae strain sequence information, assembly statistics and gene content.
DOI: 10.6084/m9.figshare.7818716.v1
title: MOESM1 of Weakly haemolytic variants of Brachyspira hyodysenteriae newly emerged in Europe belong to a distinct subclade with unique genetic properties

description: Additional file 1. Species identification results for the 39 isolates by various methods.
DOI: 10.6084/m9.figshare.7818629
title: Additional file 1: of Molecular epidemiology of hepatitis B virus infection in Norway

description: Table S1. List of 355 publically available sequences, with meta-information, included in the phylogenetic analysis. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.7818629.v1
title: Additional file 1: of Molecular epidemiology of hepatitis B virus infection in Norway

description: Table S1. List of 355 publically available sequences, with meta-information, included in the phylogenetic analysis. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.7818584
title: Additional file 4: of RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases

description: List of predictions, with relative genes, characterized by read value ratios &gt; 100. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7818584.v1
title: Additional file 4: of RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases

description: List of predictions, with relative genes, characterized by read value ratios &gt; 100. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7818566
title: Additional file 2: of RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases

description: Informations about whole genome predictions by RhoTermPredict from E. coli K-12. (TXT 20868 kb)
DOI: 10.6084/m9.figshare.7818557
title: Additional file 1: of RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases

description: Coordinates of the Rho-dependent terminators predicted by RhoTermPredict in E. coli K-12 whole genome. (XLSX 621 kb)
DOI: 10.6084/m9.figshare.7818566.v1
title: Additional file 2: of RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases

description: Informations about whole genome predictions by RhoTermPredict from E. coli K-12. (TXT 20868 kb)